Citrus Sinensis ID: 008860
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 551 | 2.2.26 [Sep-21-2011] | |||||||
| P80461 | 557 | Glutathione reductase, ch | N/A | no | 0.996 | 0.985 | 0.801 | 0.0 | |
| P42770 | 565 | Glutathione reductase, ch | yes | no | 0.911 | 0.888 | 0.825 | 0.0 | |
| P48640 | 544 | Glutathione reductase, ch | yes | no | 0.907 | 0.919 | 0.844 | 0.0 | |
| P27456 | 552 | Glutathione reductase, ch | N/A | no | 0.981 | 0.980 | 0.762 | 0.0 | |
| Q43621 | 498 | Glutathione reductase, cy | N/A | no | 0.847 | 0.937 | 0.552 | 1e-146 | |
| Q43154 | 489 | Glutathione reductase, ch | N/A | no | 0.838 | 0.944 | 0.550 | 1e-145 | |
| P48642 | 496 | Glutathione reductase, cy | no | no | 0.849 | 0.943 | 0.540 | 1e-143 | |
| O04955 | 502 | Glutathione reductase, cy | N/A | no | 0.836 | 0.918 | 0.532 | 1e-140 | |
| P48641 | 499 | Glutathione reductase, cy | no | no | 0.845 | 0.933 | 0.524 | 1e-140 | |
| P23189 | 451 | Glutathione reductase OS= | yes | no | 0.813 | 0.993 | 0.515 | 1e-127 |
| >sp|P80461|GSHRP_TOBAC Glutathione reductase, chloroplastic (Fragment) OS=Nicotiana tabacum GN=GOR PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 914 bits (2363), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 447/558 (80%), Positives = 499/558 (89%), Gaps = 9/558 (1%)
Query: 2 ATSVTTPKLTTTFYNRLPITVPLSSHF--LSLQNTLTPF-----SHNCFSLLYFQC-RRR 53
ATS++TPKL+TT + ++ F LSL N + P +H+ + C RRR
Sbjct: 1 ATSLSTPKLSTTLSSPTLHSLLYKHKFSLLSLSNPIKPLHFNFLTHSRSTPSSLSCTRRR 60
Query: 54 HVAARAKSDNGAELPSHYDFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETT 113
A RA+S NGA+ P HYDFDLFTIGAGSGGVRASRFA+NFGASVA+CELPFSTISS++T
Sbjct: 61 FTAPRAESSNGADAPRHYDFDLFTIGAGSGGVRASRFASNFGASVAVCELPFSTISSDST 120
Query: 114 GGVGGTCVLRGCVPKKLLVYASKFSHEFDESNGFGWKYGTEPQHDWSTLIANKNAELQRL 173
GGVGGTCVLRGCVPKKLLVYASK+SHEF+ES GFGW Y EP+ DWSTLIANKNAELQRL
Sbjct: 121 GGVGGTCVLRGCVPKKLLVYASKYSHEFEESCGFGWNYDVEPRFDWSTLIANKNAELQRL 180
Query: 174 TGIYKNILINAGITLIEGRGKIVDPHTVDVDGKLYSARHILISVGGRPFIPDIPGSEYAI 233
TGIYKNIL NAG+TLIEGRGK+VDPHTVDVDGKLYSA++ILISVGGRPFIPDIPGSEYAI
Sbjct: 181 TGIYKNILKNAGVTLIEGRGKVVDPHTVDVDGKLYSAKNILISVGGRPFIPDIPGSEYAI 240
Query: 234 DSDAALDLPSKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRDFVA 293
DSDAALDLP+KP KIAIVGGGYIALEFAGIF+GL SEVHVFIRQKKVLRGFDE+IRDFV
Sbjct: 241 DSDAALDLPTKPNKIAIVGGGYIALEFAGIFNGLKSEVHVFIRQKKVLRGFDEEIRDFVG 300
Query: 294 EQMSLRGIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNTKNLGLEKV 353
EQMSLRGIEFHTEESPQAI+KS DGSLS+KT++GTV+GFSH+MFATGRRPNTKNLGLE V
Sbjct: 301 EQMSLRGIEFHTEESPQAIVKSADGSLSLKTSRGTVEGFSHIMFATGRRPNTKNLGLETV 360
Query: 354 GVKMTKNGAIEVDEYSGTAVPSIWAVGDVTDRINLTPVALMEGGALAKTLFQAEPTKPDY 413
GVKMTKNGAIEVDEYS T+VPSIWAVGDVTDRINLTPVALMEGGALAKT+F EPTKPDY
Sbjct: 361 GVKMTKNGAIEVDEYSRTSVPSIWAVGDVTDRINLTPVALMEGGALAKTIFAHEPTKPDY 420
Query: 414 SAVPSAVFSQPPIGQVGLSEEQAIQEYGDIDVFTANFRPLKATLSGLPDRIFMKLVLCAK 473
VP+AVFSQPPIGQVGL EEQAI+E+GD+DV+TANFRPLKAT+SGLPDR+FMKL++CAK
Sbjct: 421 RNVPAAVFSQPPIGQVGLMEEQAIKEFGDVDVYTANFRPLKATISGLPDRVFMKLIVCAK 480
Query: 474 TNKVLGLHMCGEDAPEIVQGFAVAVKAGLTKADFDATVGVHPTAAEEFVTLRTPTRKIRK 533
T+KVLGLHMCG+DAPEIVQGFA+AVKAGLTKADFDATVG+HPT+AEEFVT+RTPTRK+R
Sbjct: 481 TSKVLGLHMCGDDAPEIVQGFAIAVKAGLTKADFDATVGIHPTSAEEFVTMRTPTRKVRS 540
Query: 534 SPPSEGMTGPEVKAAAGV 551
S PSEG ++KAAAGV
Sbjct: 541 S-PSEGKAEHDIKAAAGV 557
|
Maintains high levels of reduced glutathione in the chloroplast. Nicotiana tabacum (taxid: 4097) EC: 1EC: .EC: 8EC: .EC: 1EC: .EC: 7 |
| >sp|P42770|GSHRP_ARATH Glutathione reductase, chloroplastic OS=Arabidopsis thaliana GN=EMB2360 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 876 bits (2263), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 417/505 (82%), Positives = 459/505 (90%), Gaps = 3/505 (0%)
Query: 47 YFQCRRRHVAARAKSDNGAELPSHYDFDLFTIGAGSGGVRASRFAANFGASVAICELPFS 106
Y+ RR V A +DNGAE HYDFDLFTIGAGSGGVRASRFA +FGAS A+CELPFS
Sbjct: 64 YYHSRRFSVCA--STDNGAESDRHYDFDLFTIGAGSGGVRASRFATSFGASAAVCELPFS 121
Query: 107 TISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDESNGFGWKYGTEPQHDWSTLIANK 166
TISS+T GGVGGTCVLRGCVPKKLLVYASK+SHEF++S+GFGWKY TEP HDW+TLIANK
Sbjct: 122 TISSDTAGGVGGTCVLRGCVPKKLLVYASKYSHEFEDSHGFGWKYETEPSHDWTTLIANK 181
Query: 167 NAELQRLTGIYKNILINAGITLIEGRGKIVDPHTVDVDGKLYSARHILISVGGRPFIPDI 226
NAELQRLTGIYKNIL A + LIEGRGK++DPHTVDVDGK+Y+ R+ILI+VGGRPFIPDI
Sbjct: 182 NAELQRLTGIYKNILSKANVKLIEGRGKVIDPHTVDVDGKIYTTRNILIAVGGRPFIPDI 241
Query: 227 PGSEYAIDSDAALDLPSKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDE 286
PG E+AIDSDAALDLPSKP+KIAIVGGGYIALEFAGIF+GL EVHVFIRQKKVLRGFDE
Sbjct: 242 PGKEFAIDSDAALDLPSKPKKIAIVGGGYIALEFAGIFNGLNCEVHVFIRQKKVLRGFDE 301
Query: 287 DIRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNTK 346
D+RDFV EQMSLRGIEFHTEESP+AI+K+ DGS S+KT+KGTV+GFSHVMFATGR+PNTK
Sbjct: 302 DVRDFVGEQMSLRGIEFHTEESPEAIIKAGDGSFSLKTSKGTVEGFSHVMFATGRKPNTK 361
Query: 347 NLGLEKVGVKMTKNGAIEVDEYSGTAVPSIWAVGDVTDRINLTPVALMEGGALAKTLFQA 406
NLGLE VGVKM KNGAIEVDEYS T+VPSIWAVGDVTDRINLTPVALMEGGALAKTLFQ
Sbjct: 362 NLGLENVGVKMAKNGAIEVDEYSQTSVPSIWAVGDVTDRINLTPVALMEGGALAKTLFQN 421
Query: 407 EPTKPDYSAVPSAVFSQPPIGQVGLSEEQAIQEYGDIDVFTANFRPLKATLSGLPDRIFM 466
EPTKPDY AVP AVFSQPPIG VGL+EEQAI++YGD+DV+T+NFRPLKATLSGLPDR+FM
Sbjct: 422 EPTKPDYRAVPCAVFSQPPIGTVGLTEEQAIEQYGDVDVYTSNFRPLKATLSGLPDRVFM 481
Query: 467 KLVLCAKTNKVLGLHMCGEDAPEIVQGFAVAVKAGLTKADFDATVGVHPTAAEEFVTLRT 526
KL++CA TNKVLG+HMCGED+PEI+QGF VAVKAGLTKADFDATVGVHPTAAEEFVT+R
Sbjct: 482 KLIVCANTNKVLGVHMCGEDSPEIIQGFGVAVKAGLTKADFDATVGVHPTAAEEFVTMRA 541
Query: 527 PTRKIRKSPPSEGMTGPEVKAAAGV 551
PTRK RK SEG PE K AAGV
Sbjct: 542 PTRKFRKD-SSEGKASPEAKTAAGV 565
|
Maintains high levels of reduced glutathione in the chloroplast. Arabidopsis thaliana (taxid: 3702) EC: 1 EC: . EC: 8 EC: . EC: 1 EC: . EC: 7 |
| >sp|P48640|GSHRP_SOYBN Glutathione reductase, chloroplastic OS=Glycine max GN=GR PE=2 SV=1 | Back alignment and function description |
|---|
Score = 873 bits (2255), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 424/502 (84%), Positives = 466/502 (92%), Gaps = 2/502 (0%)
Query: 51 RRRHVAARAKSDNGAE-LPSHYDFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTIS 109
RRR RA+S NG + +P+HYDFDLFTIGAGSGGVRA RFAAN+GASVAICELPFSTIS
Sbjct: 44 RRRTFIVRAESQNGRDPVPAHYDFDLFTIGAGSGGVRARRFAANYGASVAICELPFSTIS 103
Query: 110 SETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDESNGFGWKYGTEPQHDWSTLIANKNAE 169
SETTG VGGTCV+RGCVPKKLLVYASKFSHEF+ESNGFGW+Y +EP+HDWS+ IANKNAE
Sbjct: 104 SETTG-VGGTCVIRGCVPKKLLVYASKFSHEFEESNGFGWRYDSEPKHDWSSFIANKNAE 162
Query: 170 LQRLTGIYKNILINAGITLIEGRGKIVDPHTVDVDGKLYSARHILISVGGRPFIPDIPGS 229
LQRLTGIYKNIL NAG+ LIEG GK++DPHTVDV+GKLYSA+HIL++VGGRPFIPDIPG
Sbjct: 163 LQRLTGIYKNILNNAGVKLIEGHGKMIDPHTVDVNGKLYSAKHILVAVGGRPFIPDIPGK 222
Query: 230 EYAIDSDAALDLPSKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIR 289
E AIDSDAALDLP+KP KIAIVGGGYIALEFAGIF+GL SEVHVFIRQKKVLRGFDE+IR
Sbjct: 223 ELAIDSDAALDLPTKPVKIAIVGGGYIALEFAGIFNGLKSEVHVFIRQKKVLRGFDEEIR 282
Query: 290 DFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNTKNLG 349
DFV EQMS+RGIEFHTEESPQAI KS DGS S+KTNKGTVDGFSH+MFATGRRPNT+NLG
Sbjct: 283 DFVEEQMSVRGIEFHTEESPQAITKSADGSFSLKTNKGTVDGFSHIMFATGRRPNTQNLG 342
Query: 350 LEKVGVKMTKNGAIEVDEYSGTAVPSIWAVGDVTDRINLTPVALMEGGALAKTLFQAEPT 409
LE VGVK+ K+GAIEVDEYS T+V SIWAVGDVT+RINLTPVALMEGGAL KTLFQ PT
Sbjct: 343 LESVGVKLAKDGAIEVDEYSQTSVYSIWAVGDVTNRINLTPVALMEGGALVKTLFQDNPT 402
Query: 410 KPDYSAVPSAVFSQPPIGQVGLSEEQAIQEYGDIDVFTANFRPLKATLSGLPDRIFMKLV 469
KPDY AVPSAVFSQPPIGQVGL+EEQA+Q+YGDID+FTANFRPLKATLSGLPDR+FMKLV
Sbjct: 403 KPDYRAVPSAVFSQPPIGQVGLTEEQAVQQYGDIDIFTANFRPLKATLSGLPDRVFMKLV 462
Query: 470 LCAKTNKVLGLHMCGEDAPEIVQGFAVAVKAGLTKADFDATVGVHPTAAEEFVTLRTPTR 529
+CAKTN+VLGLHMCGEDAPEIVQGFAVA+KA LTKADFDATVG+HP+AAEEFVT+RTPTR
Sbjct: 463 VCAKTNEVLGLHMCGEDAPEIVQGFAVALKARLTKADFDATVGIHPSAAEEFVTMRTPTR 522
Query: 530 KIRKSPPSEGMTGPEVKAAAGV 551
KIRKS SEG +G + KAAAGV
Sbjct: 523 KIRKSESSEGKSGSQAKAAAGV 544
|
Maintains high levels of reduced glutathione in the chloroplast. Glycine max (taxid: 3847) EC: 1 EC: . EC: 8 EC: . EC: 1 EC: . EC: 7 |
| >sp|P27456|GSHRP_PEA Glutathione reductase, chloroplastic/mitochondrial OS=Pisum sativum GN=GR PE=2 SV=1 | Back alignment and function description |
|---|
Score = 869 bits (2245), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 421/552 (76%), Positives = 476/552 (86%), Gaps = 11/552 (1%)
Query: 1 MATSVTTPKLT--TTFYNRLPITVPLSSHFLSLQNTLTPFSHNCFSLLYFQCRRRHVAAR 58
++ S +P LT T F+ + T P S F TP + +L+ R A R
Sbjct: 9 LSLSCCSPTLTRSTLFFTK---TFPFSRSFS------TPLPLSTKTLISLSPPHRTFAVR 59
Query: 59 AKSDNGAELPSHYDFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGG 118
A+S NGA+ YDFDLFTIGAGSGGVRASRFA+NFGAS A+CELPFSTISS+TTGGVGG
Sbjct: 60 AESQNGADPARQYDFDLFTIGAGSGGVRASRFASNFGASSAVCELPFSTISSDTTGGVGG 119
Query: 119 TCVLRGCVPKKLLVYASKFSHEFDESNGFGWKYGTEPQHDWSTLIANKNAELQRLTGIYK 178
TCV+RGCVPKKLLVYASKFSHEF+ESNGFGW+Y +EP+HDWS+LIANKNAELQRLTGIYK
Sbjct: 120 TCVIRGCVPKKLLVYASKFSHEFEESNGFGWRYDSEPKHDWSSLIANKNAELQRLTGIYK 179
Query: 179 NILINAGITLIEGRGKIVDPHTVDVDGKLYSARHILISVGGRPFIPDIPGSEYAIDSDAA 238
N L NAG+ LIEGRGKIVD HTVDVDGKLYSA+HIL+SVGGRPFIPDIPG EYAIDSDAA
Sbjct: 180 NTLKNAGVKLIEGRGKIVDAHTVDVDGKLYSAKHILVSVGGRPFIPDIPGKEYAIDSDAA 239
Query: 239 LDLPSKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRDFVAEQMSL 298
LDLPSKP+KIAIVGGGYIALEFAGIF+GL SEVHVFIRQKKVLRGFDE+IRDFVAE M+L
Sbjct: 240 LDLPSKPQKIAIVGGGYIALEFAGIFNGLKSEVHVFIRQKKVLRGFDEEIRDFVAENMAL 299
Query: 299 RGIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNTKNLGLEKVGVKMT 358
RGIEFHTEESP AI K+ DGSLS+KTNKGT +GFSH+MFATGR PNTK+LGLE VGVK+
Sbjct: 300 RGIEFHTEESPVAITKAADGSLSLKTNKGTEEGFSHIMFATGRSPNTKDLGLESVGVKVA 359
Query: 359 KNGAIEVDEYSGTAVPSIWAVGDVTDRINLTPVALMEGGALAKTLFQAEPTKPDYSAVPS 418
K+G+IEVDEYS T+VPSIWA+GD T+R+NLTPVALMEG ALAKTLFQ EPTKPDY A+PS
Sbjct: 360 KDGSIEVDEYSQTSVPSIWAIGDATNRVNLTPVALMEGVALAKTLFQNEPTKPDYRAIPS 419
Query: 419 AVFSQPPIGQVGLSEEQAIQEYGDIDVFTANFRPLKATLSGLPDRIFMKLVLCAKTNKVL 478
AVFSQPPIG VGL+EEQA ++YGDIDVFTANFRP+KATLSGLPDR+FMKL++ A+TN VL
Sbjct: 420 AVFSQPPIGGVGLTEEQAAEQYGDIDVFTANFRPMKATLSGLPDRVFMKLIVSAETNVVL 479
Query: 479 GLHMCGEDAPEIVQGFAVAVKAGLTKADFDATVGVHPTAAEEFVTLRTPTRKIRKSPPSE 538
GLHMCGEDA EI QGFAV +KAGLTKADFDATVG+HPTAAEEFVT+RTPTRK+RK+ S+
Sbjct: 480 GLHMCGEDAAEIAQGFAVGIKAGLTKADFDATVGIHPTAAEEFVTMRTPTRKVRKNQASQ 539
Query: 539 GMTGPEVKAAAG 550
G + + KA AG
Sbjct: 540 GKSDSKAKAVAG 551
|
Maintains high levels of reduced glutathione in the chloroplast. Pisum sativum (taxid: 3888) EC: 1 EC: . EC: 8 EC: . EC: 1 EC: . EC: 7 |
| >sp|Q43621|GSHRC_PEA Glutathione reductase, cytosolic OS=Pisum sativum PE=2 SV=1 | Back alignment and function description |
|---|
Score = 519 bits (1337), Expect = e-146, Method: Compositional matrix adjust.
Identities = 262/474 (55%), Positives = 335/474 (70%), Gaps = 7/474 (1%)
Query: 64 GAELPSHYDFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLR 123
G E YDFDLF IGAGSGGVRA+RF++NFGA V ICELPF ISSET GGVGGTCV+R
Sbjct: 16 GEEQGKVYDFDLFIIGAGSGGVRAARFSSNFGAKVGICELPFHPISSETIGGVGGTCVIR 75
Query: 124 GCVPKKLLVYASKFSHEFDESNGFGWKYGTEPQHDWSTLIANKNAELQRLTGIYKNILIN 183
GCVPKK+LVY + + E ++ FGW+ +W L+ K E+ RL GIYK +L N
Sbjct: 76 GCVPKKILVYGASYGGELQDARNFGWELNENVDFNWKKLLQKKTDEINRLNGIYKRLLSN 135
Query: 184 AGITLIEGRGKIVDPHTVDV---DG-KL-YSARHILISVGGRPFIPDIPGSEYAIDSDAA 238
AG+ L EG GKI P+ V+V DG KL YSA+HILI+ G R P+IPG E I SD A
Sbjct: 136 AGVKLFEGEGKIASPNEVEVTQLDGTKLSYSAKHILIATGSRAQRPNIPGQELGITSDEA 195
Query: 239 LDLPSKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRDFVAEQMSL 298
L L P++ I+GGGYIA+EFA I+ G+ S V++ R++ LRGFD+++R VA +
Sbjct: 196 LSLEEFPKRAVILGGGYIAVEFASIWRGMGSSVNLVFRKELPLRGFDDEMRAVVARNLEG 255
Query: 299 RGIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNTKNLGLEKVGVKMT 358
RGI H + ++K+ DG + V T+ G V+FATGR PN+K L LEKVGV+
Sbjct: 256 RGINLHPRTNLAQLIKTEDG-IKVITDHGEELIADVVLFATGRSPNSKRLNLEKVGVEFD 314
Query: 359 KNGAIEVDEYSGTAVPSIWAVGDVTDRINLTPVALMEGGALAKTLFQAEPTKPDYSAVPS 418
K GAI VDEYS T +PSIWAVGDVT+R+NLTPVALME AKT+F + +KPDY+ +P
Sbjct: 315 KAGAIVVDEYSRTNIPSIWAVGDVTNRLNLTPVALMEASLFAKTVFGGQASKPDYNDIPY 374
Query: 419 AVFSQPPIGQVGLSEEQAI-QEYGDIDVFTANFRPLKATLSGLPDRIFMKLVLCAKTNKV 477
AVF PP+ VGLSEEQA+ Q GD+ +FT+ F P+K T+SG ++ MKLV+ A+T+KV
Sbjct: 375 AVFCIPPLSVVGLSEEQAVEQTKGDVLIFTSTFNPMKNTISGRQEKTVMKLVVDAQTDKV 434
Query: 478 LGLHMCGEDAPEIVQGFAVAVKAGLTKADFDATVGVHPTAAEEFVTLRTPTRKI 531
LG MCG DAPEIVQG A+A+K G TKA FD+TVG+HP++AEEFVT+R+ TR++
Sbjct: 435 LGASMCGPDAPEIVQGIAIAIKCGATKAQFDSTVGIHPSSAEEFVTMRSETRRV 488
|
Maintains high levels of reduced glutathione in the cytosol. May play a role in the restoration of the post-stress redox state of the cytosolic glutathione pool. Pisum sativum (taxid: 3888) EC: 1 EC: . EC: 8 EC: . EC: 1 EC: . EC: 7 |
| >sp|Q43154|GSHRP_SPIOL Glutathione reductase, chloroplastic (Fragment) OS=Spinacia oleracea PE=2 SV=1 | Back alignment and function description |
|---|
Score = 516 bits (1329), Expect = e-145, Method: Compositional matrix adjust.
Identities = 258/469 (55%), Positives = 340/469 (72%), Gaps = 7/469 (1%)
Query: 69 SHYDFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPK 128
++YDFDLF IGAGSGGVRA+RF+AN GA V ICELPF ISSE GGVGGTCV+RGCVPK
Sbjct: 12 ANYDFDLFVIGAGSGGVRAARFSANLGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPK 71
Query: 129 KLLVYASKFSHEFDESNGFGWKYGTEPQHDWSTLIANKNAELQRLTGIYKNILINAGITL 188
K+LVY + F E +++ +GW+ + +W L+ K E+ RL IYK +L NAG+ L
Sbjct: 72 KILVYGASFGGELEDAKNYGWELNEKIDFNWKKLLQKKTDEIIRLNNIYKRLLSNAGVKL 131
Query: 189 IEGRGKIVDPHTVDV---DG-KL-YSARHILISVGGRPFIPDIPGSEYAIDSDAALDLPS 243
EG GKIV P+ V V DG KL YSA+HILI+ G R P+IPG E AI SD AL L
Sbjct: 132 YEGEGKIVGPNEVQVTQLDGTKLSYSAKHILIATGSRAQRPNIPGQELAITSDEALSLEE 191
Query: 244 KPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRDFVAEQMSLRGIEF 303
P+++ I+GGGYI++EFA I+ G+ ++V++ R++ LRGFD+++R VA + RG+
Sbjct: 192 FPKRVVILGGGYISVEFASIWRGMGADVNLCFRKELPLRGFDDEMRAAVARNLEGRGVNV 251
Query: 304 HTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNTKNLGLEKVGVKMTKNGAI 363
H + ++K TDG + +T+ G V+FATGR PNTK L LE +GV++ + GA+
Sbjct: 252 HPRTTLTELVK-TDGGVVARTDHGEEIEADVVLFATGRSPNTKRLNLEALGVELDRTGAV 310
Query: 364 EVDEYSGTAVPSIWAVGDVTDRINLTPVALMEGGALAKTLFQAEPTKPDYSAVPSAVFSQ 423
+VDEYS T+VPSIWA+GDVT+R+NLTPVALMEG AKT+F + +KPDYS + AVFS
Sbjct: 311 KVDEYSRTSVPSIWAIGDVTNRMNLTPVALMEGTCFAKTVFGGQNSKPDYSNIACAVFSI 370
Query: 424 PPIGQVGLSEEQAI-QEYGDIDVFTANFRPLKATLSGLPDRIFMKLVLCAKTNKVLGLHM 482
PP+ VGLSEEQAI Q GDI VFT++F P+K T+SG ++ MKLV+ A+T+KVLG M
Sbjct: 371 PPLAVVGLSEEQAIEQASGDILVFTSSFNPMKNTISGRQEKTIMKLVVDAETDKVLGASM 430
Query: 483 CGEDAPEIVQGFAVAVKAGLTKADFDATVGVHPTAAEEFVTLRTPTRKI 531
CG DA EI+QG A+A+K G TKA FD+TVG+HP+AAEEFVT+R P+R++
Sbjct: 431 CGPDAAEIMQGIAIALKFGATKAQFDSTVGIHPSAAEEFVTMREPSRRV 479
|
Maintains high levels of reduced glutathione in the chloroplast. Spinacia oleracea (taxid: 3562) EC: 1 EC: . EC: 8 EC: . EC: 1 EC: . EC: 7 |
| >sp|P48642|GSHRC_ORYSJ Glutathione reductase, cytosolic OS=Oryza sativa subsp. japonica GN=GRC2 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 509 bits (1310), Expect = e-143, Method: Compositional matrix adjust.
Identities = 258/477 (54%), Positives = 342/477 (71%), Gaps = 9/477 (1%)
Query: 71 YDFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKL 130
YD+DLF IGAGSGGVR SR +A+FGA VAICELPF ISS+ GG GGTCV+RGCVPKK+
Sbjct: 21 YDYDLFVIGAGSGGVRGSRTSASFGAKVAICELPFHPISSDWQGGHGGTCVIRGCVPKKI 80
Query: 131 LVYASKFSHEFDESNGFGWKYGTEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIE 190
LVY S F EF+++ FGW+ + +W L+ NK E+ RL G+Y+ IL N+G+T+IE
Sbjct: 81 LVYGSSFRGEFEDAKNFGWEINGDINFNWKRLLENKTQEIVRLNGVYQRILGNSGVTMIE 140
Query: 191 GRGKIVDPHTVDV---DG--KLYSARHILISVGGRPFIPDIPGSEYAIDSDAALDLPSKP 245
G G +VD HTV+V DG + Y+A+HILI+ G R +IPG E AI SD AL L P
Sbjct: 141 GAGSLVDAHTVEVTKPDGSKQRYTAKHILIATGSRAQRVNIPGKELAITSDEALSLEELP 200
Query: 246 EKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRDFVAEQMSLRGIEFHT 305
++ I+GGGYIA+EFA I+ G+ + V +F R++ LRGFD+++R VA + RGI H
Sbjct: 201 KRAVILGGGYIAVEFASIWKGMGAHVDLFYRKELPLRGFDDEMRTVVASNLEGRGIRLHP 260
Query: 306 EESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNTKNLGLEKVGVKMTKNGAIEV 365
+ + K+ DG + V T+KG V+FATGR PN++ L LE GV++ GAI+V
Sbjct: 261 GTNLSELSKTADG-IKVVTDKGEEIIADVVLFATGRTPNSQRLNLEAAGVEVDNIGAIKV 319
Query: 366 DEYSGTAVPSIWAVGDVTDRINLTPVALMEGGALAKTLFQAEPTKPDYSAVPSAVFSQPP 425
D+YS T+VP+IWAVGDVT+RINLTPVALME +KT+F +PTKPDY VP AVFS PP
Sbjct: 320 DDYSRTSVPNIWAVGDVTNRINLTPVALMEATCFSKTVFGGQPTKPDYRDVPCAVFSIPP 379
Query: 426 IGQVGLSEEQAIQE-YGDIDVFTANFRPLKATLSGLPDRIFMKLVLCAKTNKVLGLHMCG 484
+ VGLSE+QA++E D+ V+T++F P+K ++S ++ MKLV+ ++T+KVLG MCG
Sbjct: 380 LSVVGLSEQQALEEAKSDVLVYTSSFNPMKNSISKRQEKTVMKLVVDSETDKVLGASMCG 439
Query: 485 EDAPEIVQGFAVAVKAGLTKADFDATVGVHPTAAEEFVTLRTPTRKIRKSPPSEGMT 541
DAPEI+QG AVA+K G TKA FD+TVG+HP+AAEEFVT+RT TR++ SP S+ T
Sbjct: 440 PDAPEIIQGMAVALKCGATKATFDSTVGIHPSAAEEFVTMRTLTRRV--SPSSKPKT 494
|
Maintains high levels of reduced glutathione in the cytosol. Oryza sativa subsp. japonica (taxid: 39947) EC: 1 EC: . EC: 8 EC: . EC: 1 EC: . EC: 7 |
| >sp|O04955|GSHRC_BRARP Glutathione reductase, cytosolic OS=Brassica rapa subsp. pekinensis GN=GR1 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 498 bits (1281), Expect = e-140, Method: Compositional matrix adjust.
Identities = 249/468 (53%), Positives = 328/468 (70%), Gaps = 7/468 (1%)
Query: 70 HYDFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKK 129
HYDFDLF IGAGSGGVRA+RF+AN GA V ICELPF ISSE GGVGGTCV+RGCVPKK
Sbjct: 26 HYDFDLFVIGAGSGGVRAARFSANNGAKVGICELPFHPISSEEIGGVGGTCVIRGCVPKK 85
Query: 130 LLVYASKFSHEFDESNGFGWKYGTEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLI 189
+LVY + + E +++ +GW+ +W L+ K E+ RL IYK +L NA + L
Sbjct: 86 ILVYGATYGGELEDARNYGWEINGNVDFNWKKLLQKKTDEILRLNNIYKRLLANAAVKLY 145
Query: 190 EGRGKIVDPHTVDV---DGKL--YSARHILISVGGRPFIPDIPGSEYAIDSDAALDLPSK 244
EG G+IV P+ V+V DG Y+A+HILI+ G R P+IPG E AI SD AL L
Sbjct: 146 EGEGRIVGPNEVEVRQIDGTKISYTAKHILIATGSRAQKPNIPGHELAITSDEALSLEEF 205
Query: 245 PEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRDFVAEQMSLRGIEFH 304
P++ ++GGGYIA+EFA I+ G+ + V +F R++ LRGFD+++R VA + RGI H
Sbjct: 206 PKRAIVLGGGYIAVEFASIWRGMGATVDLFFRKELPLRGFDDEMRALVARNLEGRGINLH 265
Query: 305 TEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNTKNLGLEKVGVKMTKNGAIE 364
+ S ++K+ DG + V ++ G V+FATGR PNTK L LE VGV++ + GA++
Sbjct: 266 PQTSLAELIKTDDG-IKVISSHGEEFVADVVLFATGRIPNTKRLNLEAVGVELDQAGAVK 324
Query: 365 VDEYSGTAVPSIWAVGDVTDRINLTPVALMEGGALAKTLFQAEPTKPDYSAVPSAVFSQP 424
VDEYS T +PSIWAVGD T+RINLTPVALME A T+F +P K DY+ V AVF P
Sbjct: 325 VDEYSRTNIPSIWAVGDATNRINLTPVALMEATCFANTVFGGKPAKADYTNVACAVFCIP 384
Query: 425 PIGQVGLSEEQAIQE-YGDIDVFTANFRPLKATLSGLPDRIFMKLVLCAKTNKVLGLHMC 483
P+ VGLSEE+A+++ GDI VFT+ F P+K T+SG ++ MKL++ KT+KV+G MC
Sbjct: 385 PLAVVGLSEEEAVEKATGDILVFTSGFNPMKNTISGRQEKSLMKLIVDEKTDKVIGASMC 444
Query: 484 GEDAPEIVQGFAVAVKAGLTKADFDATVGVHPTAAEEFVTLRTPTRKI 531
G DA EI+QG A+A+K G TKA FD+TVG+HP++AEEFVT+RT TR+I
Sbjct: 445 GPDAAEIMQGIAIALKCGATKAQFDSTVGIHPSSAEEFVTMRTVTRRI 492
|
Maintains high levels of reduced glutathione in the cytosol. Brassica rapa subsp. pekinensis (taxid: 51351) EC: 1 EC: . EC: 8 EC: . EC: 1 EC: . EC: 7 |
| >sp|P48641|GSHRC_ARATH Glutathione reductase, cytosolic OS=Arabidopsis thaliana GN=At3g24170 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 497 bits (1280), Expect = e-140, Method: Compositional matrix adjust.
Identities = 248/473 (52%), Positives = 327/473 (69%), Gaps = 7/473 (1%)
Query: 69 SHYDFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPK 128
+HYDFDLF IGAGSGGVRA+RF+AN GA V ICELPF ISSE GGVGGTCV+RGCVPK
Sbjct: 22 THYDFDLFVIGAGSGGVRAARFSANHGAKVGICELPFHPISSEEIGGVGGTCVIRGCVPK 81
Query: 129 KLLVYASKFSHEFDESNGFGWKYGTEPQHDWSTLIANKNAELQRLTGIYKNILINAGITL 188
K+LVY + + E +++ +GW+ + W L+ K E+ RL IYK +L NA + L
Sbjct: 82 KILVYGATYGGELEDAKNYGWEINEKVDFTWKKLLQKKTDEILRLNNIYKRLLANAAVKL 141
Query: 189 IEGRGKIVDPHTVDV---DGKL--YSARHILISVGGRPFIPDIPGSEYAIDSDAALDLPS 243
EG G++V P+ V+V DG Y+A+HILI+ G R P+IPG E AI SD AL L
Sbjct: 142 YEGEGRVVGPNEVEVRQIDGTKISYTAKHILIATGSRAQKPNIPGHELAITSDEALSLEE 201
Query: 244 KPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRDFVAEQMSLRGIEF 303
P++ ++GGGYIA+EFA I+ G+ + V +F R++ LRGFD+++R VA + RG+
Sbjct: 202 FPKRAIVLGGGYIAVEFASIWRGMGATVDLFFRKELPLRGFDDEMRALVARNLEGRGVNL 261
Query: 304 HTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNTKNLGLEKVGVKMTKNGAI 363
H + S + K TD + V ++ G V+FATGR PNTK L LE VGV++ + GA+
Sbjct: 262 HPQTSLTQLTK-TDQGIKVISSHGEEFVADVVLFATGRSPNTKRLNLEAVGVELDQAGAV 320
Query: 364 EVDEYSGTAVPSIWAVGDVTDRINLTPVALMEGGALAKTLFQAEPTKPDYSAVPSAVFSQ 423
+VDEYS T +PSIWAVGD T+RINLTPVALME A T F +PTK +YS V AVF
Sbjct: 321 KVDEYSRTNIPSIWAVGDATNRINLTPVALMEATCFANTAFGGKPTKAEYSNVACAVFCI 380
Query: 424 PPIGQVGLSEEQAI-QEYGDIDVFTANFRPLKATLSGLPDRIFMKLVLCAKTNKVLGLHM 482
PP+ VGLSEE+A+ Q GDI VFT+ F P+K T+SG ++ MKL++ K++KV+G M
Sbjct: 381 PPLAVVGLSEEEAVEQATGDILVFTSGFNPMKNTISGRQEKTLMKLIVDEKSDKVIGASM 440
Query: 483 CGEDAPEIVQGFAVAVKAGLTKADFDATVGVHPTAAEEFVTLRTPTRKIRKSP 535
CG DA EI+QG A+A+K G TKA FD+TVG+HP++AEEFVT+R+ TR+I P
Sbjct: 441 CGPDAAEIMQGIAIALKCGATKAQFDSTVGIHPSSAEEFVTMRSVTRRIAHKP 493
|
Maintains high levels of reduced glutathione in the cytosol. Arabidopsis thaliana (taxid: 3702) EC: 1 EC: . EC: 8 EC: . EC: 1 EC: . EC: 7 |
| >sp|P23189|GSHR_PSEAE Glutathione reductase OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=gor PE=3 SV=1 | Back alignment and function description |
|---|
Score = 457 bits (1175), Expect = e-127, Method: Compositional matrix adjust.
Identities = 237/460 (51%), Positives = 318/460 (69%), Gaps = 12/460 (2%)
Query: 71 YDFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKL 130
+DFDLF IGAGSGGVRA+RFAA FGA VA+ E + +GGTCV GCVPKKL
Sbjct: 3 FDFDLFVIGAGSGGVRAARFAAGFGARVAVAESRY----------LGGTCVNVGCVPKKL 52
Query: 131 LVYASKFSHEFDESNGFGWKYGTEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIE 190
LVY + FS +F+++ +GW G E Q DW+TLI NKN E+QRL GIY+N+L+N+G+TL+E
Sbjct: 53 LVYGAHFSEDFEQARAYGWSAG-EAQFDWATLIGNKNREIQRLNGIYRNLLVNSGVTLLE 111
Query: 191 GRGKIVDPHTVDVDGKLYSARHILISVGGRPFIPDIPGSEYAIDSDAALDLPSKPEKIAI 250
G +++D H+V+VDG+ +SA+HIL++ GG P +PDIPG E+AI S+ A L P ++ +
Sbjct: 112 GHARLLDAHSVEVDGQRFSAKHILVATGGWPQVPDIPGKEHAITSNEAFFLERLPRRVLV 171
Query: 251 VGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRDFVAEQMSLRGIEFHTEESPQ 310
VGGGYIA+EFA IF+GL +E + R+ LRGFD +R+ + +++ +G++
Sbjct: 172 VGGGYIAVEFASIFNGLGAETTLLYRRDLFLRGFDRSVREHLRDELGKKGLDLQFNSDIA 231
Query: 311 AILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNTKNLGLEKVGVKMTKNGAIEVDEYSG 370
I K DGSL+ G V V +ATGRRP +LGLE VK+T G I VDE+
Sbjct: 232 RIDKQADGSLAATLKDGRVLEADCVFYATGRRPMLDDLGLENTAVKLTDKGFIAVDEHYQ 291
Query: 371 TAVPSIWAVGDVTDRINLTPVALMEGGALAKTLFQAEPTKP-DYSAVPSAVFSQPPIGQV 429
T+ PSI A+GDV R+ LTPVAL EG A+A+ LF+ E +P DY +P+AVFS P IG V
Sbjct: 292 TSEPSILALGDVIGRVQLTPVALAEGMAVARRLFKPEEYRPVDYKLIPTAVFSLPNIGTV 351
Query: 430 GLSEEQAIQEYGDIDVFTANFRPLKATLSGLPDRIFMKLVLCAKTNKVLGLHMCGEDAPE 489
GL+EE+A+ + +F + FRP+K TL+ ++ MKLV+ A ++VLG HM G +A E
Sbjct: 352 GLTEEEALSAGHKVKIFESRFRPMKLTLTDDQEKTLMKLVVDAHDDRVLGCHMVGAEAGE 411
Query: 490 IVQGFAVAVKAGLTKADFDATVGVHPTAAEEFVTLRTPTR 529
I+QG AVA+KAG TK FD T+G+HPTAAEEFVTLRTPTR
Sbjct: 412 ILQGIAVAMKAGATKQAFDETIGIHPTAAEEFVTLRTPTR 451
|
Maintains high levels of reduced glutathione in the cytosol. Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) (taxid: 208964) EC: 1 EC: . EC: 8 EC: . EC: 1 EC: . EC: 7 |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 551 | ||||||
| 405794587 | 553 | glutathione reductase [Dimocarpus longan | 1.0 | 0.996 | 0.882 | 0.0 | |
| 393757299 | 553 | glutathione reductase [Dimocarpus longan | 1.0 | 0.996 | 0.878 | 0.0 | |
| 224133228 | 561 | glutathione reductase [Populus trichocar | 0.981 | 0.964 | 0.807 | 0.0 | |
| 255559935 | 560 | glutathione reductase, putative [Ricinus | 0.992 | 0.976 | 0.818 | 0.0 | |
| 225437227 | 559 | PREDICTED: glutathione reductase, chloro | 0.992 | 0.978 | 0.819 | 0.0 | |
| 2425107 | 565 | glutathione reductase (NADPH) [Vitis vin | 0.994 | 0.969 | 0.820 | 0.0 | |
| 147784400 | 559 | hypothetical protein VITISV_014813 [Viti | 0.996 | 0.982 | 0.820 | 0.0 | |
| 1708059 | 557 | RecName: Full=Glutathione reductase, chl | 0.996 | 0.985 | 0.801 | 0.0 | |
| 350536365 | 557 | chloroplast glutathione reductase [Solan | 0.998 | 0.987 | 0.797 | 0.0 | |
| 449458430 | 551 | PREDICTED: glutathione reductase, chloro | 0.981 | 0.981 | 0.796 | 0.0 |
| >gi|405794587|gb|AFS30566.1| glutathione reductase [Dimocarpus longan] | Back alignment and taxonomy information |
|---|
Score = 971 bits (2511), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 488/553 (88%), Positives = 516/553 (93%), Gaps = 2/553 (0%)
Query: 1 MATSVTTPKLTTTFYNRLPITVPLSSHFLSLQNTLTPFSH--NCFSLLYFQCRRRHVAAR 58
MAT +TTP+LTTTFY +LP+ VPL HFLSL TL+ SH S ++ +RRH A R
Sbjct: 1 MATPLTTPRLTTTFYKKLPLPVPLCPHFLSLPKTLSFPSHIPRSLSHYHYHHQRRHFAVR 60
Query: 59 AKSDNGAELPSHYDFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGG 118
A SDNGAE +YDFDLFTIGAGSGGVRASRFAANFGASVA+CELPFSTISSET GGVGG
Sbjct: 61 ADSDNGAERARNYDFDLFTIGAGSGGVRASRFAANFGASVAVCELPFSTISSETAGGVGG 120
Query: 119 TCVLRGCVPKKLLVYASKFSHEFDESNGFGWKYGTEPQHDWSTLIANKNAELQRLTGIYK 178
TCVLRGCVPKKLLVYASKFSHEFDESNGFGWKY TEPQHDWSTLIANKNAEL+RLTGIYK
Sbjct: 121 TCVLRGCVPKKLLVYASKFSHEFDESNGFGWKYETEPQHDWSTLIANKNAELKRLTGIYK 180
Query: 179 NILINAGITLIEGRGKIVDPHTVDVDGKLYSARHILISVGGRPFIPDIPGSEYAIDSDAA 238
NIL NAG+TLIEGRGKIVDPHTVDVDGKLYSARHILISVGGRPFIPDIPGSEYAIDSD A
Sbjct: 181 NILNNAGVTLIEGRGKIVDPHTVDVDGKLYSARHILISVGGRPFIPDIPGSEYAIDSDVA 240
Query: 239 LDLPSKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRDFVAEQMSL 298
LDLPSKPEKIAIVGGGYIALEFAGIF+GL SEVHVFIRQKKVLRGFDE+IRDFV+EQMSL
Sbjct: 241 LDLPSKPEKIAIVGGGYIALEFAGIFNGLESEVHVFIRQKKVLRGFDEEIRDFVSEQMSL 300
Query: 299 RGIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNTKNLGLEKVGVKMT 358
RGIEFHTEESPQAILKS DGSLS+KTNKGTVDGFSH+MFATGRRPNTKNLGLE +GVKM
Sbjct: 301 RGIEFHTEESPQAILKSGDGSLSLKTNKGTVDGFSHIMFATGRRPNTKNLGLESMGVKMD 360
Query: 359 KNGAIEVDEYSGTAVPSIWAVGDVTDRINLTPVALMEGGALAKTLFQAEPTKPDYSAVPS 418
KNGAIEVDEYS T+VPSIWAVGDVTDRINLTPVALMEGGALAKTLFQ +PTKP+Y AVPS
Sbjct: 361 KNGAIEVDEYSRTSVPSIWAVGDVTDRINLTPVALMEGGALAKTLFQDQPTKPNYRAVPS 420
Query: 419 AVFSQPPIGQVGLSEEQAIQEYGDIDVFTANFRPLKATLSGLPDRIFMKLVLCAKTNKVL 478
AVFSQPPIGQVGLSEEQAIQ+YGDIDVFTANFRPLKATLSGLPDR+FMKL++CAKTNKVL
Sbjct: 421 AVFSQPPIGQVGLSEEQAIQQYGDIDVFTANFRPLKATLSGLPDRVFMKLIVCAKTNKVL 480
Query: 479 GLHMCGEDAPEIVQGFAVAVKAGLTKADFDATVGVHPTAAEEFVTLRTPTRKIRKSPPSE 538
GLHMCGEDAPEIVQGFAVAVKAGLTKADFDATVG+HPTAAEEFVT+RTPTRKIR+ PPSE
Sbjct: 481 GLHMCGEDAPEIVQGFAVAVKAGLTKADFDATVGIHPTAAEEFVTMRTPTRKIRQDPPSE 540
Query: 539 GMTGPEVKAAAGV 551
GMT PEVKAAAGV
Sbjct: 541 GMTDPEVKAAAGV 553
|
Source: Dimocarpus longan Species: Dimocarpus longan Genus: Dimocarpus Family: Sapindaceae Order: Sapindales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|393757299|gb|AFF18772.2| glutathione reductase [Dimocarpus longan] | Back alignment and taxonomy information |
|---|
Score = 967 bits (2501), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 486/553 (87%), Positives = 514/553 (92%), Gaps = 2/553 (0%)
Query: 1 MATSVTTPKLTTTFYNRLPITVPLSSHFLSLQNTLTPFSH--NCFSLLYFQCRRRHVAAR 58
MAT +TTP+LTTTFY +LP+ VPL HFLSL TL+ SH S ++ +RRH A R
Sbjct: 1 MATPLTTPRLTTTFYKKLPLPVPLCPHFLSLPKTLSFPSHIPRSLSHYHYHHQRRHFAVR 60
Query: 59 AKSDNGAELPSHYDFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGG 118
A SDNGAE +YDFDLFTIGAGSGGVRASRFAANFGASVA+CELPFSTISSET GGVGG
Sbjct: 61 ADSDNGAERARNYDFDLFTIGAGSGGVRASRFAANFGASVAVCELPFSTISSETAGGVGG 120
Query: 119 TCVLRGCVPKKLLVYASKFSHEFDESNGFGWKYGTEPQHDWSTLIANKNAELQRLTGIYK 178
TCVLRGCVPKKLLVYASKFSHEFDESNGFGWKY TEPQHDWSTLIANKNAEL+RLTGIYK
Sbjct: 121 TCVLRGCVPKKLLVYASKFSHEFDESNGFGWKYETEPQHDWSTLIANKNAELKRLTGIYK 180
Query: 179 NILINAGITLIEGRGKIVDPHTVDVDGKLYSARHILISVGGRPFIPDIPGSEYAIDSDAA 238
NIL NAG+TLIEGRGKIVDPHTVDVDGKLYSARHILISVGGRPFIPDIPGSEYAIDSD A
Sbjct: 181 NILNNAGVTLIEGRGKIVDPHTVDVDGKLYSARHILISVGGRPFIPDIPGSEYAIDSDVA 240
Query: 239 LDLPSKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRDFVAEQMSL 298
LDLPSKPEKIAIVGGGYIALEFAGIF+GL SEVHVFIRQKKVLRGFDE+IRDFV+EQMSL
Sbjct: 241 LDLPSKPEKIAIVGGGYIALEFAGIFNGLESEVHVFIRQKKVLRGFDEEIRDFVSEQMSL 300
Query: 299 RGIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNTKNLGLEKVGVKMT 358
RGIEFHTEE PQAILKS DGSLS+KTNKG VDGFSH+MFATGRRPNTKNLGLE +GVKM
Sbjct: 301 RGIEFHTEELPQAILKSGDGSLSLKTNKGAVDGFSHIMFATGRRPNTKNLGLESMGVKMD 360
Query: 359 KNGAIEVDEYSGTAVPSIWAVGDVTDRINLTPVALMEGGALAKTLFQAEPTKPDYSAVPS 418
KNGAIEVDEYS T+VPSIWAVGDVTDRINLTPVALMEGGALAKTLFQ +PTKP+Y AVPS
Sbjct: 361 KNGAIEVDEYSRTSVPSIWAVGDVTDRINLTPVALMEGGALAKTLFQDQPTKPNYRAVPS 420
Query: 419 AVFSQPPIGQVGLSEEQAIQEYGDIDVFTANFRPLKATLSGLPDRIFMKLVLCAKTNKVL 478
AVFSQPPIGQVGLSEEQAIQ+YGDIDVFTANFRPLKATLSGLPDR+FMKL++CAKTNKVL
Sbjct: 421 AVFSQPPIGQVGLSEEQAIQQYGDIDVFTANFRPLKATLSGLPDRVFMKLIVCAKTNKVL 480
Query: 479 GLHMCGEDAPEIVQGFAVAVKAGLTKADFDATVGVHPTAAEEFVTLRTPTRKIRKSPPSE 538
GLHMCGEDAPEIVQGFAVAVKAGLTKADFDATVG+HPTAAEEFVT+RTPTRKIR+ PPSE
Sbjct: 481 GLHMCGEDAPEIVQGFAVAVKAGLTKADFDATVGIHPTAAEEFVTMRTPTRKIRQDPPSE 540
Query: 539 GMTGPEVKAAAGV 551
GMT PEVKAAAGV
Sbjct: 541 GMTDPEVKAAAGV 553
|
Source: Dimocarpus longan Species: Dimocarpus longan Genus: Dimocarpus Family: Sapindaceae Order: Sapindales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224133228|ref|XP_002321515.1| glutathione reductase [Populus trichocarpa] gi|222868511|gb|EEF05642.1| glutathione reductase [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 928 bits (2399), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 457/566 (80%), Positives = 503/566 (88%), Gaps = 25/566 (4%)
Query: 2 ATSVTTPKLTT----TFYNRLPI------------TVPLSSHFLSLQNTLTPFSHNCFSL 45
A+S+TTPKLT+ + Y +LP+ + + ++ P SH+
Sbjct: 5 ASSLTTPKLTSPSLQSLYRKLPLSFPLSPSSSFLPLPKTPTTTTTFLSSRRPLSHH---- 60
Query: 46 LYFQCRRRHVAARAKSDNGAELPSHYDFDLFTIGAGSGGVRASRFAANFGASVAICELPF 105
RRH+ RA+++NGAE HYDFDLFTIGAGSGGVRASRFAANFG+SVA+CELPF
Sbjct: 61 -----HRRHLTTRAEAENGAEPSRHYDFDLFTIGAGSGGVRASRFAANFGSSVAVCELPF 115
Query: 106 STISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDESNGFGWKYGTEPQHDWSTLIAN 165
STISSETTGGVGGTCVLRGCVPKKLLVYASK++HEFDES GFGWKY +EP HDW+TL+A+
Sbjct: 116 STISSETTGGVGGTCVLRGCVPKKLLVYASKYAHEFDESRGFGWKYDSEPLHDWNTLMAH 175
Query: 166 KNAELQRLTGIYKNILINAGITLIEGRGKIVDPHTVDVDGKLYSARHILISVGGRPFIPD 225
KNAELQRLTGIYK+IL NAG+TLIEGRGKIVDPHTVDVDGKLYSARHILISVGGRPFIPD
Sbjct: 176 KNAELQRLTGIYKHILNNAGVTLIEGRGKIVDPHTVDVDGKLYSARHILISVGGRPFIPD 235
Query: 226 IPGSEYAIDSDAALDLPSKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFD 285
IPGSEYAIDSDAALDLPSKPEKIAIVGGGYIALEFAGIF+GL S+VHVFIRQKKVLRGFD
Sbjct: 236 IPGSEYAIDSDAALDLPSKPEKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQKKVLRGFD 295
Query: 286 EDIRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNT 345
E+IRDFVAEQMSLRGIEFHTEESPQAI+KS DGSLS+KTNKGTV+GFSHVMFATGRRPNT
Sbjct: 296 EEIRDFVAEQMSLRGIEFHTEESPQAIIKSADGSLSLKTNKGTVEGFSHVMFATGRRPNT 355
Query: 346 KNLGLEKVGVKMTKNGAIEVDEYSGTAVPSIWAVGDVTDRINLTPVALMEGGALAKTLFQ 405
KNLGLE +GVKMT NGAIEVDEYS T+VPSIWAVGDVTDRINLTPVALMEGGALAKTLFQ
Sbjct: 356 KNLGLESLGVKMTNNGAIEVDEYSCTSVPSIWAVGDVTDRINLTPVALMEGGALAKTLFQ 415
Query: 406 AEPTKPDYSAVPSAVFSQPPIGQVGLSEEQAIQEYGDIDVFTANFRPLKATLSGLPDRIF 465
EPTKPDY AVPSAVFSQPPIGQVGL+EEQA +EYGDIDVFTANFRPLKATLSGLPDR+F
Sbjct: 416 NEPTKPDYRAVPSAVFSQPPIGQVGLTEEQATKEYGDIDVFTANFRPLKATLSGLPDRVF 475
Query: 466 MKLVLCAKTNKVLGLHMCGEDAPEIVQGFAVAVKAGLTKADFDATVGVHPTAAEEFVTLR 525
MKL++CAKTNKVLGL+MCGED+PEIVQGFAVA+KAGLTKADFD+TVG+HPTAAEEFVTLR
Sbjct: 476 MKLIVCAKTNKVLGLNMCGEDSPEIVQGFAVAIKAGLTKADFDSTVGIHPTAAEEFVTLR 535
Query: 526 TPTRKIRKSPPSEGMTGPEVKAAAGV 551
TPTRKIR+ PP+EG +VKAAAGV
Sbjct: 536 TPTRKIRQRPPAEGKADHDVKAAAGV 561
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255559935|ref|XP_002520986.1| glutathione reductase, putative [Ricinus communis] gi|223539823|gb|EEF41403.1| glutathione reductase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 927 bits (2395), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 459/561 (81%), Positives = 501/561 (89%), Gaps = 14/561 (2%)
Query: 2 ATSVTTPKLTT-----TFYNRLPITVPLSSHFLSLQ----NTLTPFS-HNCFSLLYFQCR 51
ATS+TTPKLT+ + Y +LP+T+P+ S TLT S F+L
Sbjct: 3 ATSLTTPKLTSATSLQSLYRKLPVTIPIPIPLSSSSLSLSKTLTFLSPSRRFAL---PLH 59
Query: 52 RRHVAA-RAKSDNGAELPSHYDFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISS 110
RRH + RA S NGAE YDFDLFTIGAGSGGVRASRFA+NFGASVA+CELPFSTISS
Sbjct: 60 RRHFSVIRADSGNGAEPSRRYDFDLFTIGAGSGGVRASRFASNFGASVAVCELPFSTISS 119
Query: 111 ETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDESNGFGWKYGTEPQHDWSTLIANKNAEL 170
+TTGGVGGTCVLRGCVPKKLLVYASK+SHEFDESNGFGW Y TEP+HDWSTL+ANKNAEL
Sbjct: 120 DTTGGVGGTCVLRGCVPKKLLVYASKYSHEFDESNGFGWTYATEPKHDWSTLMANKNAEL 179
Query: 171 QRLTGIYKNILINAGITLIEGRGKIVDPHTVDVDGKLYSARHILISVGGRPFIPDIPGSE 230
QRLTGIYKN+L NAG+TLIEGRGKIVDPHTVDVDGK YSARHILISVGGRPFIP+IPGSE
Sbjct: 180 QRLTGIYKNVLKNAGVTLIEGRGKIVDPHTVDVDGKTYSARHILISVGGRPFIPEIPGSE 239
Query: 231 YAIDSDAALDLPSKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRD 290
YAIDSDAALDLPSKPEKIAIVGGGYIALEFAGIF+GLTS+VHVFIRQ+KVLRGFD++IRD
Sbjct: 240 YAIDSDAALDLPSKPEKIAIVGGGYIALEFAGIFNGLTSDVHVFIRQQKVLRGFDDEIRD 299
Query: 291 FVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNTKNLGL 350
FVAEQMSLRGIEFHTEESPQAI+K+ DGSLS+KTNKGTV+GFSH+MFATGRRPNTKNLGL
Sbjct: 300 FVAEQMSLRGIEFHTEESPQAIIKAADGSLSLKTNKGTVEGFSHIMFATGRRPNTKNLGL 359
Query: 351 EKVGVKMTKNGAIEVDEYSGTAVPSIWAVGDVTDRINLTPVALMEGGALAKTLFQAEPTK 410
E VGVKM KNGAIEVDEYS T+VPSIWAVGDVTDR+NLTPVALMEGGALAK+LF EPTK
Sbjct: 360 ETVGVKMNKNGAIEVDEYSQTSVPSIWAVGDVTDRVNLTPVALMEGGALAKSLFLNEPTK 419
Query: 411 PDYSAVPSAVFSQPPIGQVGLSEEQAIQEYGDIDVFTANFRPLKATLSGLPDRIFMKLVL 470
PDY A+PSAVFSQPPIG VGL+EEQA++EYGDID FTANFRPLKATLSGLPDR+FMKL++
Sbjct: 420 PDYRAIPSAVFSQPPIGNVGLTEEQAVKEYGDIDAFTANFRPLKATLSGLPDRVFMKLIV 479
Query: 471 CAKTNKVLGLHMCGEDAPEIVQGFAVAVKAGLTKADFDATVGVHPTAAEEFVTLRTPTRK 530
AKT KVLGLHMCGEDAPEIVQGFAVA+KAGLTKADFDATVG+HP+AAEEFVT+RTPTRK
Sbjct: 480 SAKTGKVLGLHMCGEDAPEIVQGFAVAIKAGLTKADFDATVGIHPSAAEEFVTMRTPTRK 539
Query: 531 IRKSPPSEGMTGPEVKAAAGV 551
IR PPSEG T EVKAAAGV
Sbjct: 540 IRADPPSEGTTDHEVKAAAGV 560
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225437227|ref|XP_002281935.1| PREDICTED: glutathione reductase, chloroplastic isoform 1 [Vitis vinifera] gi|359479601|ref|XP_003632299.1| PREDICTED: glutathione reductase, chloroplastic isoform 2 [Vitis vinifera] gi|297735497|emb|CBI17937.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 926 bits (2393), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 458/559 (81%), Positives = 501/559 (89%), Gaps = 12/559 (2%)
Query: 2 ATSVTTPKLT------TTFYNRLPITVPLSSHFLSLQN---TLTPFSHNCFSLLYFQCRR 52
ATS++TP+LT T Y PI++ L+ + TL P S + + + R
Sbjct: 4 ATSLSTPRLTFSSPKLQTLYRNFPISLSLNFSSSLSHSKTLTLAPGSLSQRTSSF--SPR 61
Query: 53 RHVAARAKSDNGAELPSHYDFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSET 112
R A RA+S+NGAE P HYDFDLFTIGAGSGGVRASRFAANFG+SVA+CELPF+TISSET
Sbjct: 62 RCFAVRAESENGAE-PRHYDFDLFTIGAGSGGVRASRFAANFGSSVAVCELPFATISSET 120
Query: 113 TGGVGGTCVLRGCVPKKLLVYASKFSHEFDESNGFGWKYGTEPQHDWSTLIANKNAELQR 172
TGGVGGTCVLRGCVPKKLLVYASKFSHEFDES GFGWK+ EP+HDWSTL+ANKNAELQR
Sbjct: 121 TGGVGGTCVLRGCVPKKLLVYASKFSHEFDESGGFGWKFEAEPKHDWSTLMANKNAELQR 180
Query: 173 LTGIYKNILINAGITLIEGRGKIVDPHTVDVDGKLYSARHILISVGGRPFIPDIPGSEYA 232
LTGIYKNIL NAG+TLIEGRGKIVDPHTVDVDGKLY+ARHILI+VGGRPFIP+IPGSE+A
Sbjct: 181 LTGIYKNILKNAGVTLIEGRGKIVDPHTVDVDGKLYTARHILIAVGGRPFIPEIPGSEHA 240
Query: 233 IDSDAALDLPSKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRDFV 292
IDSD ALDLPSKP+KI IVGGGYIALEFAGIF+GL ++VHVFIRQKKVLRGFDED+RDFV
Sbjct: 241 IDSDVALDLPSKPKKIGIVGGGYIALEFAGIFNGLNTDVHVFIRQKKVLRGFDEDVRDFV 300
Query: 293 AEQMSLRGIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNTKNLGLEK 352
AEQMSLRGIEFHTEESPQAILKS DGSLS+KTNKGTV+GFSH+MFATGRRPNTKNLGLE
Sbjct: 301 AEQMSLRGIEFHTEESPQAILKSADGSLSLKTNKGTVEGFSHIMFATGRRPNTKNLGLET 360
Query: 353 VGVKMTKNGAIEVDEYSGTAVPSIWAVGDVTDRINLTPVALMEGGALAKTLFQAEPTKPD 412
VGVKMTK GAIEVDE+S T+VPSIWAVGDVTDRINLTPVALMEGGALAKTLF EPTKPD
Sbjct: 361 VGVKMTKTGAIEVDEFSRTSVPSIWAVGDVTDRINLTPVALMEGGALAKTLFGNEPTKPD 420
Query: 413 YSAVPSAVFSQPPIGQVGLSEEQAIQEYGDIDVFTANFRPLKATLSGLPDRIFMKLVLCA 472
Y AVPSAVFSQPPIGQVGL+EEQAIQ+YGDIDV+TANFRPLKATLSGLPDR+FMKL++CA
Sbjct: 421 YRAVPSAVFSQPPIGQVGLTEEQAIQKYGDIDVYTANFRPLKATLSGLPDRVFMKLIVCA 480
Query: 473 KTNKVLGLHMCGEDAPEIVQGFAVAVKAGLTKADFDATVGVHPTAAEEFVTLRTPTRKIR 532
KTNKVLGLHMCGED+PEIVQGFAVAV+AGLTKADFDATVG+HPTAAEE VT+RTPTRKIR
Sbjct: 481 KTNKVLGLHMCGEDSPEIVQGFAVAVRAGLTKADFDATVGIHPTAAEELVTMRTPTRKIR 540
Query: 533 KSPPSEGMTGPEVKAAAGV 551
S P EG T PEVKAAAGV
Sbjct: 541 NSSPPEGKTDPEVKAAAGV 559
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|2425107|gb|AAB70837.1| glutathione reductase (NADPH) [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 924 bits (2387), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 456/556 (82%), Positives = 497/556 (89%), Gaps = 8/556 (1%)
Query: 3 TSVTTPKLT------TTFYNRLPITVPLSSHFLSLQ-NTLTPFSHNCFSLLYFQCRRRHV 55
+S++TP+LT T Y PI++ L+ TLT + RR
Sbjct: 11 SSLSTPRLTFSSPKLQTLYRNFPISLSLNFSSSLSHSKTLTVAPGSLSQRPSSFSPRRCF 70
Query: 56 AARAKSDNGAELPSHYDFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGG 115
A RA+S+NGAE P HYDFDLFTIGAGSGGVRASRFAANFG+SVA+CELPF+TISSETTGG
Sbjct: 71 AVRAESENGAE-PRHYDFDLFTIGAGSGGVRASRFAANFGSSVAVCELPFATISSETTGG 129
Query: 116 VGGTCVLRGCVPKKLLVYASKFSHEFDESNGFGWKYGTEPQHDWSTLIANKNAELQRLTG 175
VGGTCVLRGCVPKKLLVYASKFSHEFDES GFGWK+ EP+HDWSTL+ANKNAELQRLTG
Sbjct: 130 VGGTCVLRGCVPKKLLVYASKFSHEFDESGGFGWKFEAEPKHDWSTLMANKNAELQRLTG 189
Query: 176 IYKNILINAGITLIEGRGKIVDPHTVDVDGKLYSARHILISVGGRPFIPDIPGSEYAIDS 235
IYKNIL NAG+TLIEGRGKIVDPHTVDVDGKLY+ARHILI+VGGRPFIP+IPGSE+AIDS
Sbjct: 190 IYKNILKNAGVTLIEGRGKIVDPHTVDVDGKLYTARHILIAVGGRPFIPEIPGSEHAIDS 249
Query: 236 DAALDLPSKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRDFVAEQ 295
DAALDLPSKP+KI IVGGGYIALEFAGIF+GL ++VHVFIRQKKVLRGFDED+RDFVAEQ
Sbjct: 250 DAALDLPSKPKKIGIVGGGYIALEFAGIFNGLNTDVHVFIRQKKVLRGFDEDVRDFVAEQ 309
Query: 296 MSLRGIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNTKNLGLEKVGV 355
MSLRGIEFHTEESPQAILKS DGSLS+KTNKGTV+GFSH+MFATGRRPNTKNLGLE VGV
Sbjct: 310 MSLRGIEFHTEESPQAILKSADGSLSLKTNKGTVEGFSHIMFATGRRPNTKNLGLETVGV 369
Query: 356 KMTKNGAIEVDEYSGTAVPSIWAVGDVTDRINLTPVALMEGGALAKTLFQAEPTKPDYSA 415
KMTK GAIEVDE+S T+VPSIWAVGDVTDRINLTPVALMEGGALAKTLF EPTKPDY A
Sbjct: 370 KMTKTGAIEVDEFSRTSVPSIWAVGDVTDRINLTPVALMEGGALAKTLFGNEPTKPDYRA 429
Query: 416 VPSAVFSQPPIGQVGLSEEQAIQEYGDIDVFTANFRPLKATLSGLPDRIFMKLVLCAKTN 475
VPSAVFSQPPIGQVGL+EEQAIQ+YGDIDV+TANFRPLKATLSGLPDR+FMKL++CAKTN
Sbjct: 430 VPSAVFSQPPIGQVGLTEEQAIQKYGDIDVYTANFRPLKATLSGLPDRVFMKLIVCAKTN 489
Query: 476 KVLGLHMCGEDAPEIVQGFAVAVKAGLTKADFDATVGVHPTAAEEFVTLRTPTRKIRKSP 535
KVLGLHMCGED+PEIVQGFAVAV+AGLTKADFDATVG+HPTAAEE VT+RTPTRKIR S
Sbjct: 490 KVLGLHMCGEDSPEIVQGFAVAVRAGLTKADFDATVGIHPTAAEELVTMRTPTRKIRNSS 549
Query: 536 PSEGMTGPEVKAAAGV 551
P EG T PEVKAAAGV
Sbjct: 550 PPEGKTDPEVKAAAGV 565
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147784400|emb|CAN66042.1| hypothetical protein VITISV_014813 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 923 bits (2385), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 457/557 (82%), Positives = 495/557 (88%), Gaps = 8/557 (1%)
Query: 2 ATSVTTPKLT------TTFYNRLPITVPLSSHFLSLQ-NTLTPFSHNCFSLLYFQCRRRH 54
ATS++TP+LT T Y PI++ L+ TLT + RR
Sbjct: 4 ATSLSTPRLTFSSPKLQTLYRNFPISLSLNFSSSLSHSKTLTVAPGSLSQRPSSFSPRRC 63
Query: 55 VAARAKSDNGAELPSHYDFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTG 114
A RA+S+NGAE P HYDFDLFTIGAGSGGVRASRFAANFG+SVA+CELPF+TISSETTG
Sbjct: 64 FAVRAESENGAE-PRHYDFDLFTIGAGSGGVRASRFAANFGSSVAVCELPFATISSETTG 122
Query: 115 GVGGTCVLRGCVPKKLLVYASKFSHEFDESNGFGWKYGTEPQHDWSTLIANKNAELQRLT 174
GVGGTCVLRGCVPKKLLVYASKFSHEFDES GFGWK+ EP+HDWSTL+ANKNAELQRLT
Sbjct: 123 GVGGTCVLRGCVPKKLLVYASKFSHEFDESGGFGWKFEAEPKHDWSTLMANKNAELQRLT 182
Query: 175 GIYKNILINAGITLIEGRGKIVDPHTVDVDGKLYSARHILISVGGRPFIPDIPGSEYAID 234
GIYKNIL NAG+ LIEGRGKIVDPHTVDVDGKLY+ARHILI+VGGRPFIP+IPGSE+AID
Sbjct: 183 GIYKNILKNAGVXLIEGRGKIVDPHTVDVDGKLYTARHILIAVGGRPFIPEIPGSEHAID 242
Query: 235 SDAALDLPSKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRDFVAE 294
SDAALDLPSKP+KI IVGGGYIALEFAGIF+GL VHVFIRQKKVLRGFDED+RDFVAE
Sbjct: 243 SDAALDLPSKPKKIGIVGGGYIALEFAGIFNGLXXXVHVFIRQKKVLRGFDEDVRDFVAE 302
Query: 295 QMSLRGIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNTKNLGLEKVG 354
QMSLRGIEFHTEESPQAILKS DGSLS+KTNKGTV+GFSH+MFATGRRPNTKNLGLE VG
Sbjct: 303 QMSLRGIEFHTEESPQAILKSADGSLSLKTNKGTVEGFSHIMFATGRRPNTKNLGLETVG 362
Query: 355 VKMTKNGAIEVDEYSGTAVPSIWAVGDVTDRINLTPVALMEGGALAKTLFQAEPTKPDYS 414
VKMTK GAIEVDE+S T+VPSIWAVGDVTDRINLTPVALMEGGALAKTLF EPTKPDY
Sbjct: 363 VKMTKTGAIEVDEFSRTSVPSIWAVGDVTDRINLTPVALMEGGALAKTLFGNEPTKPDYR 422
Query: 415 AVPSAVFSQPPIGQVGLSEEQAIQEYGDIDVFTANFRPLKATLSGLPDRIFMKLVLCAKT 474
AVPSAVFSQPPIGQVGL+EEQAIQ+YGDIDV+TANFRPLKATLSGLPDR+FMKL++CAKT
Sbjct: 423 AVPSAVFSQPPIGQVGLTEEQAIQKYGDIDVYTANFRPLKATLSGLPDRVFMKLIVCAKT 482
Query: 475 NKVLGLHMCGEDAPEIVQGFAVAVKAGLTKADFDATVGVHPTAAEEFVTLRTPTRKIRKS 534
NKVLGLHMCGED+PEIVQGFAVAV+AGLTKADFDATVG+HPTAAEE VT+RTPTRKIR S
Sbjct: 483 NKVLGLHMCGEDSPEIVQGFAVAVRAGLTKADFDATVGIHPTAAEELVTMRTPTRKIRNS 542
Query: 535 PPSEGMTGPEVKAAAGV 551
P EG T PEVKAAAGV
Sbjct: 543 SPPEGKTDPEVKAAAGV 559
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|1708059|sp|P80461.1|GSHRP_TOBAC RecName: Full=Glutathione reductase, chloroplastic; Short=GR; Short=GRase; Flags: Precursor gi|431955|emb|CAA53925.1| glutathione reductase (NADPH) [Nicotiana tabacum] | Back alignment and taxonomy information |
|---|
Score = 914 bits (2363), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 447/558 (80%), Positives = 499/558 (89%), Gaps = 9/558 (1%)
Query: 2 ATSVTTPKLTTTFYNRLPITVPLSSHF--LSLQNTLTPF-----SHNCFSLLYFQC-RRR 53
ATS++TPKL+TT + ++ F LSL N + P +H+ + C RRR
Sbjct: 1 ATSLSTPKLSTTLSSPTLHSLLYKHKFSLLSLSNPIKPLHFNFLTHSRSTPSSLSCTRRR 60
Query: 54 HVAARAKSDNGAELPSHYDFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETT 113
A RA+S NGA+ P HYDFDLFTIGAGSGGVRASRFA+NFGASVA+CELPFSTISS++T
Sbjct: 61 FTAPRAESSNGADAPRHYDFDLFTIGAGSGGVRASRFASNFGASVAVCELPFSTISSDST 120
Query: 114 GGVGGTCVLRGCVPKKLLVYASKFSHEFDESNGFGWKYGTEPQHDWSTLIANKNAELQRL 173
GGVGGTCVLRGCVPKKLLVYASK+SHEF+ES GFGW Y EP+ DWSTLIANKNAELQRL
Sbjct: 121 GGVGGTCVLRGCVPKKLLVYASKYSHEFEESCGFGWNYDVEPRFDWSTLIANKNAELQRL 180
Query: 174 TGIYKNILINAGITLIEGRGKIVDPHTVDVDGKLYSARHILISVGGRPFIPDIPGSEYAI 233
TGIYKNIL NAG+TLIEGRGK+VDPHTVDVDGKLYSA++ILISVGGRPFIPDIPGSEYAI
Sbjct: 181 TGIYKNILKNAGVTLIEGRGKVVDPHTVDVDGKLYSAKNILISVGGRPFIPDIPGSEYAI 240
Query: 234 DSDAALDLPSKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRDFVA 293
DSDAALDLP+KP KIAIVGGGYIALEFAGIF+GL SEVHVFIRQKKVLRGFDE+IRDFV
Sbjct: 241 DSDAALDLPTKPNKIAIVGGGYIALEFAGIFNGLKSEVHVFIRQKKVLRGFDEEIRDFVG 300
Query: 294 EQMSLRGIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNTKNLGLEKV 353
EQMSLRGIEFHTEESPQAI+KS DGSLS+KT++GTV+GFSH+MFATGRRPNTKNLGLE V
Sbjct: 301 EQMSLRGIEFHTEESPQAIVKSADGSLSLKTSRGTVEGFSHIMFATGRRPNTKNLGLETV 360
Query: 354 GVKMTKNGAIEVDEYSGTAVPSIWAVGDVTDRINLTPVALMEGGALAKTLFQAEPTKPDY 413
GVKMTKNGAIEVDEYS T+VPSIWAVGDVTDRINLTPVALMEGGALAKT+F EPTKPDY
Sbjct: 361 GVKMTKNGAIEVDEYSRTSVPSIWAVGDVTDRINLTPVALMEGGALAKTIFAHEPTKPDY 420
Query: 414 SAVPSAVFSQPPIGQVGLSEEQAIQEYGDIDVFTANFRPLKATLSGLPDRIFMKLVLCAK 473
VP+AVFSQPPIGQVGL EEQAI+E+GD+DV+TANFRPLKAT+SGLPDR+FMKL++CAK
Sbjct: 421 RNVPAAVFSQPPIGQVGLMEEQAIKEFGDVDVYTANFRPLKATISGLPDRVFMKLIVCAK 480
Query: 474 TNKVLGLHMCGEDAPEIVQGFAVAVKAGLTKADFDATVGVHPTAAEEFVTLRTPTRKIRK 533
T+KVLGLHMCG+DAPEIVQGFA+AVKAGLTKADFDATVG+HPT+AEEFVT+RTPTRK+R
Sbjct: 481 TSKVLGLHMCGDDAPEIVQGFAIAVKAGLTKADFDATVGIHPTSAEEFVTMRTPTRKVRS 540
Query: 534 SPPSEGMTGPEVKAAAGV 551
S PSEG ++KAAAGV
Sbjct: 541 S-PSEGKAEHDIKAAAGV 557
|
Source: Nicotiana tabacum Species: Nicotiana tabacum Genus: Nicotiana Family: Solanaceae Order: Solanales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|350536365|ref|NP_001234243.1| chloroplast glutathione reductase [Solanum lycopersicum] gi|314951945|gb|ABZ10803.2| chloroplast glutathione reductase [Solanum lycopersicum] | Back alignment and taxonomy information |
|---|
Score = 905 bits (2338), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 445/558 (79%), Positives = 490/558 (87%), Gaps = 8/558 (1%)
Query: 1 MATSVTTPKLTTTF----YNRLPITVPLSSHFLSLQNTLTPFSHNCFSLLY---FQCRRR 53
MATS+++PKL+TT ++ L T + LSL N + P N S RR
Sbjct: 1 MATSLSSPKLSTTLSSPTFHSLYKTKFSNFSLLSLSNPIKPLRFNFLSHTRTSSLSYGRR 60
Query: 54 HVAARAKSDNGAELPSHYDFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETT 113
RA+S NGAE HYDFDLFTIGAGSGGVRASRFA+NFGASVA+CELPFSTISS++T
Sbjct: 61 FTTPRAESSNGAETSRHYDFDLFTIGAGSGGVRASRFASNFGASVAVCELPFSTISSDST 120
Query: 114 GGVGGTCVLRGCVPKKLLVYASKFSHEFDESNGFGWKYGTEPQHDWSTLIANKNAELQRL 173
GGVGGTCVLRGCVPKKLLVYASK+SHEF+ES GFGW Y EP+HDWSTLIANKNAELQRL
Sbjct: 121 GGVGGTCVLRGCVPKKLLVYASKYSHEFEESCGFGWNYEAEPKHDWSTLIANKNAELQRL 180
Query: 174 TGIYKNILINAGITLIEGRGKIVDPHTVDVDGKLYSARHILISVGGRPFIPDIPGSEYAI 233
TGIYKNIL NA +TLIEGRGK+VDPHTVDVDGKLYSA++ILISVGGRPFIPDIPGSEYAI
Sbjct: 181 TGIYKNILKNADVTLIEGRGKVVDPHTVDVDGKLYSAKNILISVGGRPFIPDIPGSEYAI 240
Query: 234 DSDAALDLPSKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRDFVA 293
DSDAALDLP+KP+KIAIVGGGYIALEFAGIF+GL SEVHVFIRQKKVLRGFDE+IRDFV
Sbjct: 241 DSDAALDLPTKPDKIAIVGGGYIALEFAGIFNGLKSEVHVFIRQKKVLRGFDEEIRDFVG 300
Query: 294 EQMSLRGIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNTKNLGLEKV 353
EQMSLRGIEFHTEESPQAI+KS DGSLS+KTN+GTV+GFSH+MFATGR PNTKNLGL+ V
Sbjct: 301 EQMSLRGIEFHTEESPQAIVKSADGSLSIKTNRGTVEGFSHIMFATGRSPNTKNLGLDTV 360
Query: 354 GVKMTKNGAIEVDEYSGTAVPSIWAVGDVTDRINLTPVALMEGGALAKTLFQAEPTKPDY 413
GVKMTKNGAIEVDEYS T+VPSIWAVGDVTDRINLTPVALMEGGALAKT+F EPTKPDY
Sbjct: 361 GVKMTKNGAIEVDEYSRTSVPSIWAVGDVTDRINLTPVALMEGGALAKTIFAGEPTKPDY 420
Query: 414 SAVPSAVFSQPPIGQVGLSEEQAIQEYGDIDVFTANFRPLKATLSGLPDRIFMKLVLCAK 473
VP AVFSQPPIG VGL+EE+AI+EYGD+DV+TANFRPLKATLSGLPDR+FMKLV+CAK
Sbjct: 421 RNVPCAVFSQPPIGLVGLTEEEAIKEYGDVDVYTANFRPLKATLSGLPDRVFMKLVVCAK 480
Query: 474 TNKVLGLHMCGEDAPEIVQGFAVAVKAGLTKADFDATVGVHPTAAEEFVTLRTPTRKIRK 533
++KVLGLHMCG+DAPEIVQGFAVAVKAGLTKADFD TVG+HPTAAEEFVT+RTPTRKIR
Sbjct: 481 SSKVLGLHMCGDDAPEIVQGFAVAVKAGLTKADFDTTVGIHPTAAEEFVTMRTPTRKIRS 540
Query: 534 SPPSEGMTGPEVKAAAGV 551
S P EG + KAAA V
Sbjct: 541 S-PFEGKAEHDSKAAARV 557
|
Source: Solanum lycopersicum Species: Solanum lycopersicum Genus: Solanum Family: Solanaceae Order: Solanales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449458430|ref|XP_004146950.1| PREDICTED: glutathione reductase, chloroplastic-like [Cucumis sativus] gi|449517205|ref|XP_004165636.1| PREDICTED: glutathione reductase, chloroplastic-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 901 bits (2329), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 447/561 (79%), Positives = 495/561 (88%), Gaps = 20/561 (3%)
Query: 1 MATSVTTPK-LTTTFYNRLP---------ITVPLSSHFLSLQNTLTPFSHNCFSLLYFQC 50
MATS+++ + L T F LP I PLS L L P ++N C
Sbjct: 1 MATSLSSSQTLHTLFCKNLPFSLSSSFLSIPKPLSP--LPLSPRFLPLTNN-----RLHC 53
Query: 51 RRRHVAARAKSDNGAELPSHYDFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISS 110
RR + R++S+NG E YDFDLFTIGAGSGGVRASRFAANFGASVA+CELPFSTISS
Sbjct: 54 RR-GIVVRSQSENGVEALRPYDFDLFTIGAGSGGVRASRFAANFGASVAVCELPFSTISS 112
Query: 111 ETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDESNGFGWKYGTEPQHDWSTLIANKNAEL 170
++ GGVGGTCV+RGCVPKKLLVYASK++HEF+ES+GFGWKY TEP+HDWSTLIANKNAEL
Sbjct: 113 DSAGGVGGTCVIRGCVPKKLLVYASKYAHEFEESHGFGWKYDTEPKHDWSTLIANKNAEL 172
Query: 171 QRLTGIYKNILINAGITLIEGRGKIVDPHTVDVDGKLYSARHILISVGGRPFIPDIPGSE 230
RLTGIYKN+L NAG+TLIEGRGKI+D HT+DVDGK+YSARHIL+SVGGRPFIPDIPGSE
Sbjct: 173 HRLTGIYKNVLNNAGVTLIEGRGKILDEHTIDVDGKIYSARHILVSVGGRPFIPDIPGSE 232
Query: 231 YAIDSDAALDLPSKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRD 290
YAIDSDAAL+LPSKP KIAIVGGGYIALEFAGIF+GL SEVHVFIRQKKVLRGFDE+IRD
Sbjct: 233 YAIDSDAALELPSKPVKIAIVGGGYIALEFAGIFNGLKSEVHVFIRQKKVLRGFDEEIRD 292
Query: 291 FVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNTKNLGL 350
FVAEQMSLRG+EFHTEE PQAILKS DGSLS+KT+KGTV+GFSHVMFATGRRPNTKNLGL
Sbjct: 293 FVAEQMSLRGVEFHTEEVPQAILKSADGSLSLKTSKGTVEGFSHVMFATGRRPNTKNLGL 352
Query: 351 EKVGVKMTKNGAIEVDEYSGTAVPSIWAVGDVTDRINLTPVALMEGGALAKTLFQAEPTK 410
E+VGVKMTKNGAIEVDEYS T+VPSIWAVGDVTDRINLTPVALMEGGALAKT+FQ EPTK
Sbjct: 353 EEVGVKMTKNGAIEVDEYSRTSVPSIWAVGDVTDRINLTPVALMEGGALAKTIFQNEPTK 412
Query: 411 PDYSAVPSAVFSQPPIGQVGLSEEQAIQEYGDIDVFTANFRPLKATLSGLPDRIFMKLVL 470
P YSAVP AVFSQPPIG VGL+EEQAIQE+GD+D++TANFRPLKATLSGLPDR+FMKLV+
Sbjct: 413 PSYSAVPCAVFSQPPIGIVGLNEEQAIQEHGDVDIYTANFRPLKATLSGLPDRVFMKLVV 472
Query: 471 CAKTNKVLGLHMCGEDAPEIVQGFAVAVKAGLTKADFDATVGVHPTAAEEFVTLRTPTRK 530
CAKTNKVLGLHMCG+D+PEIVQGFAVAVKAGLTKADFDATVGVHPTAAEEFVT+RTPTRK
Sbjct: 473 CAKTNKVLGLHMCGDDSPEIVQGFAVAVKAGLTKADFDATVGVHPTAAEEFVTMRTPTRK 532
Query: 531 IRKSPPSEGMTGPEVKAAAGV 551
IR++P E + E KAAAGV
Sbjct: 533 IRRNP--EEKSESEAKAAAGV 551
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 551 | ||||||
| TAIR|locus:2102410 | 565 | GR "AT3G54660" [Arabidopsis th | 0.987 | 0.962 | 0.781 | 1.9e-234 | |
| TAIR|locus:2093691 | 499 | GR1 "glutathione-disulfide red | 0.845 | 0.933 | 0.524 | 2.8e-128 | |
| UNIPROTKB|Q48JF8 | 452 | gor "Glutathione-disulfide red | 0.814 | 0.993 | 0.509 | 9.8e-119 | |
| TIGR_CMR|SPO_1328 | 452 | SPO_1328 "glutathione-disulfid | 0.807 | 0.984 | 0.467 | 2.5e-106 | |
| TIGR_CMR|CPS_4984 | 454 | CPS_4984 "glutathione reductas | 0.802 | 0.973 | 0.426 | 5.5e-93 | |
| UNIPROTKB|P06715 | 450 | gor "glutathione reductase (NA | 0.805 | 0.986 | 0.419 | 3e-92 | |
| TIGR_CMR|SO_4702 | 451 | SO_4702 "glutathione reductase | 0.798 | 0.975 | 0.406 | 9.9e-87 | |
| UNIPROTKB|Q9KVG0 | 454 | VC0186 "Glutathione reductase" | 0.796 | 0.966 | 0.400 | 2.6e-86 | |
| TIGR_CMR|VC_0186 | 454 | VC_0186 "glutathione reductase | 0.796 | 0.966 | 0.400 | 2.6e-86 | |
| WB|WBGene00008117 | 473 | gsr-1 [Caenorhabditis elegans | 0.803 | 0.936 | 0.396 | 8.9e-86 |
| TAIR|locus:2102410 GR "AT3G54660" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2234 (791.5 bits), Expect = 1.9e-234, Sum P(2) = 1.9e-234
Identities = 436/558 (78%), Positives = 484/558 (86%)
Query: 4 SVTTPKLTTTFYNRLPITVPL----SSHFLSLQNTLTP-FS-HNCFSLL----YFQCRRR 53
S ++P L +LPI + L SS FLSL TLT +S +LL Y+ RR
Sbjct: 12 SSSSPSLQF-LCKKLPIAIHLPSSSSSSFLSLPKTLTSLYSLRPRIALLSNHRYYHSRRF 70
Query: 54 HVAARAKSDNGAELPSHYDFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETT 113
V A +DNGAE HYDFDLFTIGAGSGGVRASRFA +FGAS A+CELPFSTISS+T
Sbjct: 71 SVCA--STDNGAESDRHYDFDLFTIGAGSGGVRASRFATSFGASAAVCELPFSTISSDTA 128
Query: 114 GGVGGTCVLRGCVPKKLLVYASKFSHEFDESNGFGWKYGTEPQHDWSTLIANKNAELQRL 173
GGVGGTCVLRGCVPKKLLVYASK+SHEF++S+GFGWKY TEP HDW+TLIANKNAELQRL
Sbjct: 129 GGVGGTCVLRGCVPKKLLVYASKYSHEFEDSHGFGWKYETEPSHDWTTLIANKNAELQRL 188
Query: 174 TGIYKNILINAGITLIEGRGKIVDPHTVDVDGKLYSARHILISVGGRPFIPDIPGSEYAI 233
TGIYKNIL A + LIEGRGK++DPHTVDVDGK+Y+ R+ILI+VGGRPFIPDIPG E+AI
Sbjct: 189 TGIYKNILSKANVKLIEGRGKVIDPHTVDVDGKIYTTRNILIAVGGRPFIPDIPGKEFAI 248
Query: 234 DSDAALDLPSKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRDFVA 293
DSDAALDLPSKP+KIAIVGGGYIALEFAGIF+GL EVHVFIRQKKVLRGFDED+RDFV
Sbjct: 249 DSDAALDLPSKPKKIAIVGGGYIALEFAGIFNGLNCEVHVFIRQKKVLRGFDEDVRDFVG 308
Query: 294 EQMSLRGIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNTKNLGLEKV 353
EQMSLRGIEFHTEESP+AI+K+ DGS S+KT+KGTV+GFSHVMFATGR+PNTKNLGLE V
Sbjct: 309 EQMSLRGIEFHTEESPEAIIKAGDGSFSLKTSKGTVEGFSHVMFATGRKPNTKNLGLENV 368
Query: 354 GVKMTKNGAIEVDEYSGTAVPSIWAVGDVTDRINLTPVALMEGGALAKTLFQAEPTKPDY 413
GVKM KNGAIEVDEYS T+VPSIWAVGDVTDRINLTPVALMEGGALAKTLFQ EPTKPDY
Sbjct: 369 GVKMAKNGAIEVDEYSQTSVPSIWAVGDVTDRINLTPVALMEGGALAKTLFQNEPTKPDY 428
Query: 414 SAVPSAVFSQPPIGQVGLSEEQAIQEYGDIDVFTANFRPLKATLSGLPDRIFMKLVLCAK 473
AVP AVFSQPPIG VGL+EEQAI++YGD+DV+T+NFRPLKATLSGLPDR+FMKL++CA
Sbjct: 429 RAVPCAVFSQPPIGTVGLTEEQAIEQYGDVDVYTSNFRPLKATLSGLPDRVFMKLIVCAN 488
Query: 474 TNKVLGLHMCGEDAPEIVQGFAVAVKAGLTKADFDATVGVHPTAAEEFVTLRTPTRKIRK 533
TNKVLG+HMCGED+PEI+QGF VAVKAGLTKADFDATVGVHPTAAEEFVT+R PTRK RK
Sbjct: 489 TNKVLGVHMCGEDSPEIIQGFGVAVKAGLTKADFDATVGVHPTAAEEFVTMRAPTRKFRK 548
Query: 534 SPPSEGMTGPEVKAAAGV 551
SEG PE K AAGV
Sbjct: 549 DS-SEGKASPEAKTAAGV 565
|
|
| TAIR|locus:2093691 GR1 "glutathione-disulfide reductase" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1259 (448.2 bits), Expect = 2.8e-128, P = 2.8e-128
Identities = 248/473 (52%), Positives = 330/473 (69%)
Query: 69 SHYDFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPK 128
+HYDFDLF IGAGSGGVRA+RF+AN GA V ICELPF ISSE GGVGGTCV+RGCVPK
Sbjct: 22 THYDFDLFVIGAGSGGVRAARFSANHGAKVGICELPFHPISSEEIGGVGGTCVIRGCVPK 81
Query: 129 KLLVYASKFSHEFDESNGFGWKYGTEPQHDWSTLIANKNAELQRLTGIYKNILINAGITL 188
K+LVY + + E +++ +GW+ + W L+ K E+ RL IYK +L NA + L
Sbjct: 82 KILVYGATYGGELEDAKNYGWEINEKVDFTWKKLLQKKTDEILRLNNIYKRLLANAAVKL 141
Query: 189 IEGRGKIVDPHTVDV---DG-KL-YSARHILISVGGRPFIPDIPGSEYAIDSDAALDLPS 243
EG G++V P+ V+V DG K+ Y+A+HILI+ G R P+IPG E AI SD AL L
Sbjct: 142 YEGEGRVVGPNEVEVRQIDGTKISYTAKHILIATGSRAQKPNIPGHELAITSDEALSLEE 201
Query: 244 KPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRDFVAEQMSLRGIEF 303
P++ ++GGGYIA+EFA I+ G+ + V +F R++ LRGFD+++R VA + RG+
Sbjct: 202 FPKRAIVLGGGYIAVEFASIWRGMGATVDLFFRKELPLRGFDDEMRALVARNLEGRGVNL 261
Query: 304 HTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNTKNLGLEKVGVKMTKNGAI 363
H + S + K TD + V ++ G V+FATGR PNTK L LE VGV++ + GA+
Sbjct: 262 HPQTSLTQLTK-TDQGIKVISSHGEEFVADVVLFATGRSPNTKRLNLEAVGVELDQAGAV 320
Query: 364 EVDEYSGTAVPSIWAVGDVTDRINLTPVALMEGGALAKTLFQAEPTKPDYSAVPSAVFSQ 423
+VDEYS T +PSIWAVGD T+RINLTPVALME A T F +PTK +YS V AVF
Sbjct: 321 KVDEYSRTNIPSIWAVGDATNRINLTPVALMEATCFANTAFGGKPTKAEYSNVACAVFCI 380
Query: 424 PPIGQVGLSEEQAIQEY-GDIDVFTANFRPLKATLSGLPDRIFMKLVLCAKTNKVLGLHM 482
PP+ VGLSEE+A+++ GDI VFT+ F P+K T+SG ++ MKL++ K++KV+G M
Sbjct: 381 PPLAVVGLSEEEAVEQATGDILVFTSGFNPMKNTISGRQEKTLMKLIVDEKSDKVIGASM 440
Query: 483 CGEDAPEIVQGFAVAVKAGLTKADFDATVGVHPTAAEEFVTLRTPTRKIRKSP 535
CG DA EI+QG A+A+K G TKA FD+TVG+HP++AEEFVT+R+ TR+I P
Sbjct: 441 CGPDAAEIMQGIAIALKCGATKAQFDSTVGIHPSSAEEFVTMRSVTRRIAHKP 493
|
|
| UNIPROTKB|Q48JF8 gor "Glutathione-disulfide reductase" [Pseudomonas syringae pv. phaseolicola 1448A (taxid:264730)] | Back alignment and assigned GO terms |
|---|
Score = 1169 (416.6 bits), Expect = 9.8e-119, P = 9.8e-119
Identities = 235/461 (50%), Positives = 317/461 (68%)
Query: 71 YDFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKL 130
+DFDLF IGAGSGGVRA+RFAA FGA VA+ E + +GGTCV GCVPKKL
Sbjct: 3 FDFDLFVIGAGSGGVRAARFAAGFGAKVAVAESRY----------LGGTCVNVGCVPKKL 52
Query: 131 LVYASKFSHEFDESNGFGWKYGTEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIE 190
LVY + FS +FD + GFGW G E DWSTLIANK+ E+ RL GIY+ +L+++G+TL+E
Sbjct: 53 LVYGAHFSEDFDHAKGFGWSLG-EASFDWSTLIANKDREINRLNGIYRKLLVDSGVTLLE 111
Query: 191 GRGKIVDPHTVDVDGKLYSARHILISVGGRPFIPDIPGSEYAIDSDAALDLPSKPEKIAI 250
G ++V P V+++G+ YSA ILI+ GG P +PD+PG E+AI S+ A L + P+++ +
Sbjct: 112 GHARLVGPQRVEINGQSYSAERILIATGGWPQVPDVPGREHAITSNEAFYLKTLPKRVVV 171
Query: 251 VGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRDFVAEQMSLRGIEFHTEESPQ 310
VGGGYIA+EFA IF+GL ++ + R++ LRGFD +R + E++ R + +
Sbjct: 172 VGGGYIAVEFASIFNGLGADTTLVYRRELFLRGFDGGVRTHLHEELLKRHMTIRFNSDIE 231
Query: 311 AILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNTKNLGLEKVGVKMTKNGAIEVDEYSG 370
I K DGSL + G V +ATGRRP NLGL+ V +K+ ++G I+VDE+
Sbjct: 232 RIDKQADGSLLLSMKGGGTLETDCVFYATGRRPMLDNLGLDSVDIKLDEHGYIKVDEHYQ 291
Query: 371 TAVPSIWAVGDVTDRINLTPVALMEGGALAKTLFQAEPTKP-DYSAVPSAVFSQPPIGQV 429
++ PSI A+GDV + LTPVAL EG A+A+ LF+ E +P DY+ +P+AVFS P IG V
Sbjct: 292 SSEPSILAIGDVIGGVQLTPVALAEGMAVARRLFKPEQYRPVDYNHIPTAVFSLPNIGTV 351
Query: 430 GLSEEQAIQEYGDIDVFTANFRPLKATLSGLPDRIFMKLVLCAKTNKVLGLHMCGEDAPE 489
GL+EE AI+ D+ VF + FRP+K TL+ +R MKLV+ AKT++VLG HM G DA E
Sbjct: 352 GLTEEDAIKAGHDVQVFESRFRPMKLTLTDDQERTLMKLVVDAKTDRVLGCHMVGPDAGE 411
Query: 490 IVQGFAVAVKAGLTKADFDATVGVHPTAAEEFVTLRTPTRK 530
IVQ A+A+KAG TK FD T+GVHPTAAEEFVT+RTP ++
Sbjct: 412 IVQSLAIAIKAGATKQVFDDTIGVHPTAAEEFVTMRTPAKR 452
|
|
| TIGR_CMR|SPO_1328 SPO_1328 "glutathione-disulfide reductase" [Ruegeria pomeroyi DSS-3 (taxid:246200)] | Back alignment and assigned GO terms |
|---|
Score = 1052 (375.4 bits), Expect = 2.5e-106, P = 2.5e-106
Identities = 216/462 (46%), Positives = 299/462 (64%)
Query: 71 YDFDLFTIGAGSGGVRASRFAAN-FGASVAICELPFSTISSETTGGVGGTCVLRGCVPKK 129
+D+DLF IG GSGGVRA+R AA GA VA+ E E GGTCV+RGCVPKK
Sbjct: 3 FDYDLFVIGGGSGGVRAARVAAGETGAKVALAE--------EDR--YGGTCVIRGCVPKK 52
Query: 130 LLVYASKFSHEFDESNGFGWKYGTEP-QHDWSTLIANKNAELQRLTGIYKNILINAGITL 188
L+V+AS++S +++ +GW +P DW + EL RL G+Y+NIL N G+
Sbjct: 53 LMVFASEYSGMVEDAQAYGWNI--QPGAFDWDVFRSKLYTELDRLEGVYRNILKNNGVET 110
Query: 189 IEGRGKIVDPHTVDV-DGKLYSARHILISVGGRPFIPDIPGSEYAIDSDAALDLPSKPEK 247
+ R ++VD HTV++ DG SA+HILI+ GGRP P+I G+E AI S+ L PE+
Sbjct: 111 FDMRARLVDAHTVELSDGTRKSAKHILIATGGRPVKPEIKGAELAITSNEIFHLDKLPER 170
Query: 248 IAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRDFVAEQMSLRGIEFHTEE 307
+ IVGGGYIA EF GI +G+ EV + R ++LRGFD++ R V+E+M GI+ H
Sbjct: 171 MLIVGGGYIACEFVGIMNGMGVEVTQYYRGAQILRGFDDEARGLVSEEMCQNGIKLHLGT 230
Query: 308 SPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNTKNLGLEKVGVKMTKNGAIEVDE 367
+ + + D + VK G + F VMFATGR PN +LGLE +GV++ + G I VD+
Sbjct: 231 NVLEMEREGD-RIRVKATNGDEELFDQVMFATGRVPNADHLGLEGLGVELGRKGQIVVDD 289
Query: 368 YSGTAVPSIWAVGDVTDRINLTPVALMEGGALAKTLFQAEPTKPDYSAVPSAVFSQPPIG 427
YS TAVPSI+A+GDVTDR+NLTPVA+ EG A T+F+ +PT D++ +P+A+F+QP +G
Sbjct: 290 YSQTAVPSIYAIGDVTDRVNLTPVAIREGMAFVDTVFRGKPTPVDHALIPTAIFTQPEMG 349
Query: 428 QVGLSEEQAIQEYGDIDVFTANFRPLKATLSGLPDRIFMKLVLCAKTNKVLGLHMCGEDA 487
VGLSEE+A + ++++ +F+P++ +G R+ MKL++ T KVLG H+ A
Sbjct: 350 TVGLSEEEAAAQE-PVEIYATSFKPMQTAFAGRSQRVLMKLIVSKATRKVLGCHIVAPGA 408
Query: 488 PEIVQGFAVAVKAGLTKADFDATVGVHPTAAEEFVTLRTPTR 529
E++Q +AVK G TK DFD TV VHP AEE VTLR P R
Sbjct: 409 GEMIQLVGIAVKMGATKEDFDRTVAVHPVMAEELVTLRQPVR 450
|
|
| TIGR_CMR|CPS_4984 CPS_4984 "glutathione reductase" [Colwellia psychrerythraea 34H (taxid:167879)] | Back alignment and assigned GO terms |
|---|
Score = 926 (331.0 bits), Expect = 5.5e-93, P = 5.5e-93
Identities = 196/460 (42%), Positives = 280/460 (60%)
Query: 73 FDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLV 132
FD IG GSGG+ ++ AA G A+ E + +GGTCV GCVPKK +
Sbjct: 5 FDYLAIGGGSGGIASANRAAKLGKKAAVIEAKY----------IGGTCVNVGCVPKKAMW 54
Query: 133 YASKFSHEFDESNGFGW-KYGTE--PQHDWSTLIANKNAELQRLTGIYKNILINAGITLI 189
YA + S ++ +G+ ++ T+ PQ DW+ L+AN+ A ++R+ Y+ +T+I
Sbjct: 55 YAGQISDALKYASDYGFAQHLTQDTPQFDWAKLVANREAYIERIHAAYQRGFDANDVTVI 114
Query: 190 EGRGKIVDPHTVDVDGKLYSARHILISVGGRPFIPDIPGSEYAIDSDAALDLPSKPEKIA 249
+G K VD +TV+V+G+L +A HI I+ GGRP +P+I G++Y IDSD L +P+ +A
Sbjct: 115 DGFAKFVDKNTVEVNGELITADHITIATGGRPTLPNIEGADYGIDSDGFFALTEQPKSVA 174
Query: 250 IVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRDFVAEQMSLRGIEFHTEESP 309
+VG GYIA+E AG+F L ++ H+ +R++K LRGFD + D + EQM+ G H +P
Sbjct: 175 VVGAGYIAVELAGVFHALGTKAHLLVRKEKPLRGFDNMLSDTLVEQMAKHGPTLHNHSTP 234
Query: 310 QAILKSTDGSLSVK-TNKGTVDGFSHVMFATGRRPNTKNLGLEKVGVKMTKNGAIEVDEY 368
+ I K DGSL + TN T+ +++A GR P T N+ L GV M + G IE D+Y
Sbjct: 235 ERIEKLADGSLVIHLTNGKTIGPVETLVWAIGREPATDNINLAAAGVAMNERGFIETDKY 294
Query: 369 SGTAVPSIWAVGDVTDRINLTPVALMEGGALAKTLFQAEPTKP-DYSAVPSAVFSQPPIG 427
T V I+AVGD T R LTPVA+ G L + LF +P + DYS + + VFS P IG
Sbjct: 295 QNTNVDGIYAVGDNTGRAQLTPVAVAAGRRLCERLFNNKPEEHLDYSGIATVVFSHPVIG 354
Query: 428 QVGLSEEQAIQEYGD--IDVFTANFRPL-KATLSGLPDRIFMKLVLCAKTNKVLGLHMCG 484
VGL+E +AI +YG+ I V+ + F L +A D MKL+ K KV+GLH G
Sbjct: 355 TVGLTENEAIAQYGEENITVYKSQFTALYQAITEDHRDPTRMKLICAGKEEKVVGLHSIG 414
Query: 485 EDAPEIVQGFAVAVKAGLTKADFDATVGVHPTAAEEFVTL 524
+ E++QGFAVA+K G TKADFD T+ +HPT+AEEFVT+
Sbjct: 415 FGSDELLQGFAVAMKMGATKADFDNTIAIHPTSAEEFVTM 454
|
|
| UNIPROTKB|P06715 gor "glutathione reductase (NADPH)" [Escherichia coli K-12 (taxid:83333)] | Back alignment and assigned GO terms |
|---|
Score = 919 (328.6 bits), Expect = 3.0e-92, P = 3.0e-92
Identities = 195/465 (41%), Positives = 286/465 (61%)
Query: 67 LPSHYDFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCV 126
+ HYD+ IG GSGG+ + AA +G A+ E + E +GGTCV GCV
Sbjct: 1 MTKHYDY--IAIGGGSGGIASINRAAMYGQKCALIE------AKE----LGGTCVNVGCV 48
Query: 127 PKKLLVYASKFSHEFDESNGFGWKYG---TEPQHDWSTLIANKNAELQRLTGIYKNILIN 183
PKK++ +A++ + +G YG T + +W TLIA++ A + R+ Y+N+L
Sbjct: 49 PKKVMWHAAQIREAI---HMYGPDYGFDTTINKFNWETLIASRTAYIDRIHTSYENVLGK 105
Query: 184 AGITLIEGRGKIVDPHTVDVDGKLYSARHILISVGGRPFIPDIPGSEYAIDSDAALDLPS 243
+ +I+G + VD T++V+G+ +A HILI+ GGRP PDIPG EY IDSD LP+
Sbjct: 106 NNVDVIKGFARFVDAKTLEVNGETITADHILIATGGRPSHPDIPGVEYGIDSDGFFALPA 165
Query: 244 KPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRDFVAEQMSLRGIEF 303
PE++A+VG GYIA+E AG+ +GL ++ H+F+R+ LR FD I + + E M+ G +
Sbjct: 166 LPERVAVVGAGYIAVELAGVINGLGAKTHLFVRKHAPLRSFDPMISETLVEVMNAEGPQL 225
Query: 304 HTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNTKNLGLEKVGVKMTKNGAI 363
HT P+A++K+TDGSL+++ G + +++A GR P N+ LE GVK + G I
Sbjct: 226 HTNAIPKAVVKNTDGSLTLELEDGRSETVDCLIWAIGREPANDNINLEAAGVKTNEKGYI 285
Query: 364 EVDEYSGTAVPSIWAVGDVTDRINLTPVALMEGGALAKTLFQAEPTKP-DYSAVPSAVFS 422
VD+Y T + I+AVGD T + LTPVA+ G L++ LF +P + DYS +P+ VFS
Sbjct: 286 VVDKYQNTNIEGIYAVGDNTGAVELTPVAVAAGRRLSERLFNNKPDEHLDYSNIPTVVFS 345
Query: 423 QPPIGQVGLSEEQAIQEYGD--IDVFTANFRPLKATLSGLPDRIFMKLVLCAKTNKVLGL 480
PPIG VGL+E QA ++YGD + V+ ++F + ++ MKLV K++G+
Sbjct: 346 HPPIGTVGLTEPQAREQYGDDQVKVYKSSFTAMYTAVTTHRQPCRMKLVCVGSEEKIVGI 405
Query: 481 HMCGEDAPEIVQGFAVAVKAGLTKADFDATVGVHPTAAEEFVTLR 525
H G E++QGFAVA+K G TK DFD TV +HPTAAEEFVT+R
Sbjct: 406 HGIGFGMDEMLQGFAVALKMGATKKDFDNTVAIHPTAAEEFVTMR 450
|
|
| TIGR_CMR|SO_4702 SO_4702 "glutathione reductase" [Shewanella oneidensis MR-1 (taxid:211586)] | Back alignment and assigned GO terms |
|---|
Score = 867 (310.3 bits), Expect = 9.9e-87, P = 9.9e-87
Identities = 187/460 (40%), Positives = 270/460 (58%)
Query: 73 FDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLV 132
FD +GAGSGG+ ++ AA GA V + E VGGTCV GCVPKK++
Sbjct: 5 FDYICLGAGSGGIASANRAAMRGAKVLLIEAKH----------VGGTCVNVGCVPKKVMW 54
Query: 133 YASKFSHEFDESNGFGWKYGTEP---QHDWSTLIANKNAELQRLTGIYKNILINAGITLI 189
Y + H + N + YG + + DW+TL+ ++ A + R+ Y N +TL+
Sbjct: 55 YGA---HIAEAMNLYAKDYGFDVSVNKFDWNTLVNSREAYIGRIHEAYGRGFTNNKVTLL 111
Query: 190 EGRGKIVDPHTVDVDGKLYSARHILISVGGRPFIPDIPGSEYAIDSDAALDLPSKPEKIA 249
G G+ V+ +T++V+G+ Y+A HILI+ GG P IP+IPG+EY IDSD L +P+++A
Sbjct: 112 NGYGRFVNGNTIEVNGEHYTADHILIATGGAPTIPNIPGAEYGIDSDGFFALREQPKRVA 171
Query: 250 IVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRDFVAEQMSLRGIEFHTEESP 309
+VG GYIA+E AG+ L SE H+F+R+ LR FD + D + + M G HT P
Sbjct: 172 VVGAGYIAVEVAGVLHALGSETHLFVRKHAPLRNFDPMLIDALVDAMKTEGPTLHTNSVP 231
Query: 310 QAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNTKNLGLEKVGVKMTKNGAIEVDEYS 369
Q+++K+ D SL++ G +++A GR P T N+GLE V++ G + D
Sbjct: 232 QSVVKNADDSLTLNLENGESVTVDCLIWAIGRSPATGNIGLENTEVQLDSKGYVITDAQQ 291
Query: 370 GTAVPSIWAVGDV-TDRINLTPVALMEGGALAKTLFQA-EPTKPDYSAVPSAVFSQPPIG 427
T I+ VGD+ + LTPVA+ G L++ LF A K DYS +P+ VFS PPIG
Sbjct: 292 NTTHKGIYCVGDIMAGGVELTPVAVKAGRLLSERLFNAMSDAKMDYSQIPTVVFSHPPIG 351
Query: 428 QVGLSEEQAIQEYGD--IDVFTANFRPLKATLSGLPDRIFMKLVLCAKTNKVLGLHMCGE 485
+GL+E +A +YGD + V+T++F + ++ MKLV K +KV+G+H G
Sbjct: 352 TMGLTEPEARAQYGDGNVKVYTSSFTSMYTAVTSHRQACKMKLVCAGKEDKVVGIHGIGF 411
Query: 486 DAPEIVQGFAVAVKAGLTKADFDATVGVHPTAAEEFVTLR 525
EI+QGF VA+K G TKADFDA V +HPT AEEFVT+R
Sbjct: 412 GMDEILQGFGVAMKMGATKADFDAVVAIHPTGAEEFVTMR 451
|
|
| UNIPROTKB|Q9KVG0 VC0186 "Glutathione reductase" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] | Back alignment and assigned GO terms |
|---|
Score = 863 (308.9 bits), Expect = 2.6e-86, P = 2.6e-86
Identities = 184/459 (40%), Positives = 273/459 (59%)
Query: 73 FDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLV 132
FD IG GSGG+ ++ AA +GA VA+ E +GGTCV GCVPKK++
Sbjct: 9 FDYLCIGGGSGGIASANRAAMYGAKVALIEAK----------DLGGTCVNVGCVPKKVMW 58
Query: 133 YASKFS---HEFDESNGFGWKYGTEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLI 189
+ ++ + H + E GF +W+ L+ ++ A + R+ Y +L N + +I
Sbjct: 59 HGAQIAEAMHLYAEDYGFDVDV---KNFNWAKLVESRQAYIGRIHQSYDRVLGNNKVHVI 115
Query: 190 EGRGKIVDPHTVDVDGKLYSARHILISVGGRPFIPDIPGSEYAIDSDAALDLPSKPEKIA 249
+G K VD TV+V+G+LY+A HILI+VGGRP IP+IPG+EY IDS+ +L +P+++A
Sbjct: 116 KGFAKFVDAKTVEVNGELYTADHILIAVGGRPSIPNIPGAEYGIDSNGFFELSEQPKRVA 175
Query: 250 IVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRDFVAEQMSLRGIEFHTEESP 309
++G GYIA+E AG+ + L +E H+F R++ LR FD I + + E M+ G + HT P
Sbjct: 176 VIGAGYIAVEIAGVLNALGTETHLFCRKESPLRSFDPMIIETLVEVMNSEGPQLHTHSVP 235
Query: 310 QAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNTKNLGLEKVGVKMTKNGAIEVDEYS 369
+ ++K DGSL++ G +++A GR P T + L GV + G I+VDE+
Sbjct: 236 KQVVKEADGSLTLHLENGQTYNVDTLIWAIGRHPATDAINLAATGVATNEQGYIKVDEFQ 295
Query: 370 GTAVPSIWAVGDVTDR-INLTPVALMEGGALAKTLFQAE-PTKPDYSAVPSAVFSQPPIG 427
T V I+ VGD+ + I LTPVA+ G L++ LF + K DY VP+ VFS PPIG
Sbjct: 296 NTNVAGIYCVGDIMEGGIELTPVAVKAGRQLSERLFNNKLNAKMDYQLVPTVVFSHPPIG 355
Query: 428 QVGLSEEQAIQEYG--DIDVFTANFRPLKATLSGLPDRIFMKLVLCAKTNKVLGLHMCGE 485
+GL+E QAI +YG ++ V+ ++F + ++ MKLV V+GLH G
Sbjct: 356 TIGLTEPQAIAQYGAENVKVYKSSFTAMYTAVTSHRQPCKMKLVCAGPEETVVGLHGIGF 415
Query: 486 DAPEIVQGFAVAVKAGLTKADFDATVGVHPTAAEEFVTL 524
E++QGF VA+K G TKADFD+ V +HPT +EEFVT+
Sbjct: 416 AVDEMIQGFGVAMKMGATKADFDSVVAIHPTGSEEFVTM 454
|
|
| TIGR_CMR|VC_0186 VC_0186 "glutathione reductase" [Vibrio cholerae O1 biovar El Tor (taxid:686)] | Back alignment and assigned GO terms |
|---|
Score = 863 (308.9 bits), Expect = 2.6e-86, P = 2.6e-86
Identities = 184/459 (40%), Positives = 273/459 (59%)
Query: 73 FDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLV 132
FD IG GSGG+ ++ AA +GA VA+ E +GGTCV GCVPKK++
Sbjct: 9 FDYLCIGGGSGGIASANRAAMYGAKVALIEAK----------DLGGTCVNVGCVPKKVMW 58
Query: 133 YASKFS---HEFDESNGFGWKYGTEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLI 189
+ ++ + H + E GF +W+ L+ ++ A + R+ Y +L N + +I
Sbjct: 59 HGAQIAEAMHLYAEDYGFDVDV---KNFNWAKLVESRQAYIGRIHQSYDRVLGNNKVHVI 115
Query: 190 EGRGKIVDPHTVDVDGKLYSARHILISVGGRPFIPDIPGSEYAIDSDAALDLPSKPEKIA 249
+G K VD TV+V+G+LY+A HILI+VGGRP IP+IPG+EY IDS+ +L +P+++A
Sbjct: 116 KGFAKFVDAKTVEVNGELYTADHILIAVGGRPSIPNIPGAEYGIDSNGFFELSEQPKRVA 175
Query: 250 IVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRDFVAEQMSLRGIEFHTEESP 309
++G GYIA+E AG+ + L +E H+F R++ LR FD I + + E M+ G + HT P
Sbjct: 176 VIGAGYIAVEIAGVLNALGTETHLFCRKESPLRSFDPMIIETLVEVMNSEGPQLHTHSVP 235
Query: 310 QAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNTKNLGLEKVGVKMTKNGAIEVDEYS 369
+ ++K DGSL++ G +++A GR P T + L GV + G I+VDE+
Sbjct: 236 KQVVKEADGSLTLHLENGQTYNVDTLIWAIGRHPATDAINLAATGVATNEQGYIKVDEFQ 295
Query: 370 GTAVPSIWAVGDVTDR-INLTPVALMEGGALAKTLFQAE-PTKPDYSAVPSAVFSQPPIG 427
T V I+ VGD+ + I LTPVA+ G L++ LF + K DY VP+ VFS PPIG
Sbjct: 296 NTNVAGIYCVGDIMEGGIELTPVAVKAGRQLSERLFNNKLNAKMDYQLVPTVVFSHPPIG 355
Query: 428 QVGLSEEQAIQEYG--DIDVFTANFRPLKATLSGLPDRIFMKLVLCAKTNKVLGLHMCGE 485
+GL+E QAI +YG ++ V+ ++F + ++ MKLV V+GLH G
Sbjct: 356 TIGLTEPQAIAQYGAENVKVYKSSFTAMYTAVTSHRQPCKMKLVCAGPEETVVGLHGIGF 415
Query: 486 DAPEIVQGFAVAVKAGLTKADFDATVGVHPTAAEEFVTL 524
E++QGF VA+K G TKADFD+ V +HPT +EEFVT+
Sbjct: 416 AVDEMIQGFGVAMKMGATKADFDSVVAIHPTGSEEFVTM 454
|
|
| WB|WBGene00008117 gsr-1 [Caenorhabditis elegans (taxid:6239)] | Back alignment and assigned GO terms |
|---|
Score = 858 (307.1 bits), Expect = 8.9e-86, P = 8.9e-86
Identities = 182/459 (39%), Positives = 271/459 (59%)
Query: 72 DFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLL 131
+FD IG GSGG+ ++R A FG SV + E +G +GGTCV GCVPKK++
Sbjct: 20 EFDYLVIGGGSGGIASARRAREFGVSVGLIE----------SGRLGGTCVNVGCVPKKVM 69
Query: 132 VYASKFSHEFDESNGFGWKYGTEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIEG 191
S + + +G+ T + DW + +++ ++RL G+Y++ L + + I G
Sbjct: 70 YNCSLHAEFIRDHADYGFDV-TLNKFDWKVIKKSRDEYIKRLNGLYESGLKGSSVEYIRG 128
Query: 192 RGKIVDPHTVDVDGKLYSARHILISVGGRPFIPDIPGSEYAIDSDAALDLPSKPEKIAIV 251
R + TV+V+G Y ++ LI+VGG+P IP+I G+E+ IDSD DL P + +V
Sbjct: 129 RATFAEDGTVEVNGAKYRGKNTLIAVGGKPTIPNIKGAEHGIDSDGFFDLEDLPSRTVVV 188
Query: 252 GGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRDFVAEQMSLRGIEFHTEESPQA 311
G GYIA+E AG+ + L S+ H+ IR KVLR FD+ + D + M H ++ Q
Sbjct: 189 GAGYIAVEIAGVLANLGSDTHLLIRYDKVLRTFDKMLSDELTADMDEETNPLHLHKNTQV 248
Query: 312 --ILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNTKNLGLEKVGVKMTKNGAIEVDEYS 369
++K DG L++KT G ++ +++A GR P TK L LE+VGVK K+G I VDEY
Sbjct: 249 TEVIKGDDGLLTIKTTTGVIEKVQTLIWAIGRDPLTKELNLERVGVKTDKSGHIIVDEYQ 308
Query: 370 GTAVPSIWAVGDVTDRINLTPVALMEGGALAKTLFQAEP-TKPDYSAVPSAVFSQPPIGQ 428
T+ P I +VGD T + LTPVA+ G L+ LF E K Y + + VFS P IG
Sbjct: 309 NTSAPGILSVGDDTGKFLLTPVAIAAGRRLSHRLFNGETDNKLTYENIATVVFSHPLIGT 368
Query: 429 VGLSEEQAIQEYG--DIDVFTANFRPLKATLSGLPDRIFMKLVLCAKTNKVLGLHMCGED 486
VGL+E +A+++YG ++ ++ + F P+ ++ ++ MKLV K KV+G+H+ G
Sbjct: 369 VGLTEAEAVEKYGKDEVTLYKSRFNPMLFAVTKHKEKAAMKLVCVGKDEKVVGVHVFGVG 428
Query: 487 APEIVQGFAVAVKAGLTKADFDATVGVHPTAAEEFVTLR 525
+ E++QGFAVAV G TK FD TV +HPT+AEE VT+R
Sbjct: 429 SDEMLQGFAVAVTMGATKKQFDQTVAIHPTSAEELVTMR 467
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| P80461 | GSHRP_TOBAC | 1, ., 8, ., 1, ., 7 | 0.8010 | 0.9963 | 0.9856 | N/A | no |
| P42770 | GSHRP_ARATH | 1, ., 8, ., 1, ., 7 | 0.8257 | 0.9110 | 0.8884 | yes | no |
| Q43621 | GSHRC_PEA | 1, ., 8, ., 1, ., 7 | 0.5527 | 0.8475 | 0.9377 | N/A | no |
| Q8T137 | GSHR_DICDI | 1, ., 8, ., 1, ., 7 | 0.3881 | 0.8130 | 0.9634 | yes | no |
| Q74ZK4 | GSHR_ASHGO | 1, ., 8, ., 1, ., 7 | 0.3818 | 0.8384 | 0.9625 | yes | no |
| P48640 | GSHRP_SOYBN | 1, ., 8, ., 1, ., 7 | 0.8446 | 0.9074 | 0.9191 | yes | no |
| P27456 | GSHRP_PEA | 1, ., 8, ., 1, ., 7 | 0.7626 | 0.9818 | 0.9800 | N/A | no |
| Q6C5H4 | GSHR_YARLI | 1, ., 8, ., 1, ., 7 | 0.3850 | 0.8112 | 0.9510 | yes | no |
| Q43154 | GSHRP_SPIOL | 1, ., 8, ., 1, ., 7 | 0.5501 | 0.8384 | 0.9447 | N/A | no |
| Q6FRV2 | GSHR_CANGA | 1, ., 8, ., 1, ., 7 | 0.3886 | 0.8112 | 0.9390 | yes | no |
| P78965 | GSHR_SCHPO | 1, ., 8, ., 1, ., 7 | 0.4 | 0.8039 | 0.9547 | yes | no |
| P48639 | GSHR_BURCE | 1, ., 8, ., 1, ., 7 | 0.5010 | 0.8039 | 0.9866 | N/A | no |
| P48638 | GSHR_NOSS1 | 1, ., 8, ., 1, ., 7 | 0.4628 | 0.8003 | 0.9607 | yes | no |
| Q5NVA2 | TRXR1_PONAB | 1, ., 8, ., 1, ., 9 | 0.3844 | 0.8421 | 0.9298 | yes | no |
| O04955 | GSHRC_BRARP | 1, ., 8, ., 1, ., 7 | 0.5320 | 0.8366 | 0.9183 | N/A | no |
| P47791 | GSHR_MOUSE | 1, ., 8, ., 1, ., 7 | 0.3924 | 0.8112 | 0.894 | yes | no |
| P23189 | GSHR_PSEAE | 1, ., 8, ., 1, ., 7 | 0.5152 | 0.8130 | 0.9933 | yes | no |
| P41921 | GSHR_YEAST | 1, ., 8, ., 1, ., 7 | 0.3658 | 0.8257 | 0.9420 | yes | no |
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
| Your Input: | |||||||||||
| PtrcGR1 | glutathione reductase (EC-1.8.1.7) (562 aa) | ||||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| gw1.I.2970.1 | hypothetical protein (547 aa) | • | • | 0.901 | |||||||
| gw1.145.154.1 | hypothetical protein (564 aa) | • | • | 0.901 | |||||||
| fgenesh4_pg.C_LG_V000227 | hypothetical protein (624 aa) | • | • | 0.900 | |||||||
| gw1.XI.3695.1 | hypothetical protein (213 aa) | • | 0.899 | ||||||||
| gw1.X.4735.1 | hypothetical protein (207 aa) | • | 0.899 | ||||||||
| gw1.VIII.2694.1 | hypothetical protein (225 aa) | • | 0.899 | ||||||||
| gw1.28.365.1 | hypothetical protein (220 aa) | • | 0.899 | ||||||||
| gw1.13302.2.1 | annotation not avaliable (135 aa) | • | 0.899 | ||||||||
| grail3.0104000601 | SubName- Full=Putative uncharacterized protein; (213 aa) | • | 0.899 | ||||||||
| grail3.0044011201 | hypothetical protein (214 aa) | • | 0.899 | ||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 551 | |||
| PLN02546 | 558 | PLN02546, PLN02546, glutathione reductase | 0.0 | |
| PRK06116 | 450 | PRK06116, PRK06116, glutathione reductase; Validat | 0.0 | |
| PLN02507 | 499 | PLN02507, PLN02507, glutathione reductase | 0.0 | |
| TIGR01424 | 446 | TIGR01424, gluta_reduc_2, glutathione-disulfide re | 0.0 | |
| COG1249 | 454 | COG1249, Lpd, Pyruvate/2-oxoglutarate dehydrogenas | 1e-150 | |
| TIGR01421 | 450 | TIGR01421, gluta_reduc_1, glutathione-disulfide re | 1e-146 | |
| TIGR01438 | 484 | TIGR01438, TGR, thioredoxin and glutathione reduct | 1e-119 | |
| TIGR01423 | 486 | TIGR01423, trypano_reduc, trypanothione-disulfide | 1e-119 | |
| PRK06292 | 460 | PRK06292, PRK06292, dihydrolipoamide dehydrogenase | 1e-110 | |
| PTZ00058 | 561 | PTZ00058, PTZ00058, glutathione reductase; Provisi | 1e-103 | |
| TIGR01350 | 460 | TIGR01350, lipoamide_DH, dihydrolipoamide dehydrog | 1e-100 | |
| PTZ00052 | 499 | PTZ00052, PTZ00052, thioredoxin reductase; Provisi | 2e-99 | |
| TIGR02053 | 463 | TIGR02053, MerA, mercuric reductase | 4e-93 | |
| PRK06370 | 463 | PRK06370, PRK06370, mercuric reductase; Validated | 4e-93 | |
| PRK06416 | 462 | PRK06416, PRK06416, dihydrolipoamide dehydrogenase | 7e-93 | |
| PRK07846 | 451 | PRK07846, PRK07846, mycothione reductase; Reviewed | 4e-73 | |
| PRK05976 | 472 | PRK05976, PRK05976, dihydrolipoamide dehydrogenase | 4e-69 | |
| PRK06327 | 475 | PRK06327, PRK06327, dihydrolipoamide dehydrogenase | 2e-67 | |
| TIGR03452 | 452 | TIGR03452, mycothione_red, mycothione reductase | 8e-65 | |
| pfam07992 | 283 | pfam07992, Pyr_redox_2, Pyridine nucleotide-disulp | 8e-64 | |
| PRK07251 | 438 | PRK07251, PRK07251, pyridine nucleotide-disulfide | 8e-61 | |
| PRK06467 | 471 | PRK06467, PRK06467, dihydrolipoamide dehydrogenase | 1e-58 | |
| PRK06912 | 458 | PRK06912, acoL, dihydrolipoamide dehydrogenase; Va | 2e-56 | |
| PRK05249 | 461 | PRK05249, PRK05249, soluble pyridine nucleotide tr | 5e-55 | |
| PRK14694 | 468 | PRK14694, PRK14694, putative mercuric reductase; P | 5e-55 | |
| PRK07818 | 466 | PRK07818, PRK07818, dihydrolipoamide dehydrogenase | 3e-54 | |
| PRK13748 | 561 | PRK13748, PRK13748, putative mercuric reductase; P | 7e-52 | |
| PRK14727 | 479 | PRK14727, PRK14727, putative mercuric reductase; P | 9e-50 | |
| PRK08010 | 441 | PRK08010, PRK08010, pyridine nucleotide-disulfide | 1e-46 | |
| PRK07845 | 466 | PRK07845, PRK07845, flavoprotein disulfide reducta | 3e-46 | |
| PRK06115 | 466 | PRK06115, PRK06115, dihydrolipoamide dehydrogenase | 3e-44 | |
| pfam02852 | 110 | pfam02852, Pyr_redox_dim, Pyridine nucleotide-disu | 7e-41 | |
| PTZ00153 | 659 | PTZ00153, PTZ00153, lipoamide dehydrogenase; Provi | 2e-39 | |
| PRK09564 | 444 | PRK09564, PRK09564, coenzyme A disulfide reductase | 7e-28 | |
| TIGR03385 | 427 | TIGR03385, CoA_CoA_reduc, CoA-disulfide reductase | 1e-26 | |
| pfam00070 | 82 | pfam00070, Pyr_redox, Pyridine nucleotide-disulphi | 1e-21 | |
| COG0446 | 415 | COG0446, HcaD, Uncharacterized NAD(FAD)-dependent | 4e-20 | |
| COG0492 | 305 | COG0492, TrxB, Thioredoxin reductase [Posttranslat | 3e-17 | |
| COG1251 | 793 | COG1251, NirB, NAD(P)H-nitrite reductase [Energy p | 5e-14 | |
| TIGR02374 | 785 | TIGR02374, nitri_red_nirB, nitrite reductase [NAD( | 1e-12 | |
| TIGR01292 | 299 | TIGR01292, TRX_reduct, thioredoxin-disulfide reduc | 3e-12 | |
| COG1252 | 405 | COG1252, Ndh, NADH dehydrogenase, FAD-containing s | 7e-12 | |
| PRK13512 | 438 | PRK13512, PRK13512, coenzyme A disulfide reductase | 5e-11 | |
| PRK04965 | 377 | PRK04965, PRK04965, NADH:flavorubredoxin oxidoredu | 4e-09 | |
| TIGR03169 | 364 | TIGR03169, Nterm_to_SelD, pyridine nucleotide-disu | 4e-09 | |
| PRK14989 | 847 | PRK14989, PRK14989, nitrite reductase subunit NirD | 2e-08 | |
| TIGR01316 | 449 | TIGR01316, gltA, glutamate synthase (NADPH), homot | 2e-08 | |
| PTZ00318 | 424 | PTZ00318, PTZ00318, NADH dehydrogenase-like protei | 3e-07 | |
| TIGR03140 | 515 | TIGR03140, AhpF, alkyl hydroperoxide reductase sub | 3e-05 | |
| pfam13434 | 335 | pfam13434, K_oxygenase, L-lysine 6-monooxygenase ( | 6e-05 | |
| COG3634 | 520 | COG3634, AhpF, Alkyl hydroperoxide reductase, larg | 2e-04 | |
| COG3486 | 436 | COG3486, IucD, Lysine/ornithine N-monooxygenase [S | 3e-04 | |
| PRK11749 | 457 | PRK11749, PRK11749, dihydropyrimidine dehydrogenas | 6e-04 | |
| PRK12770 | 352 | PRK12770, PRK12770, putative glutamate synthase su | 7e-04 | |
| PRK10262 | 321 | PRK10262, PRK10262, thioredoxin reductase; Provisi | 0.003 | |
| PRK09754 | 396 | PRK09754, PRK09754, phenylpropionate dioxygenase f | 0.004 |
| >gnl|CDD|215301 PLN02546, PLN02546, glutathione reductase | Back alignment and domain information |
|---|
Score = 1041 bits (2694), Expect = 0.0
Identities = 459/559 (82%), Positives = 499/559 (89%), Gaps = 12/559 (2%)
Query: 2 ATSVTTPKLTT-----TFYNRLPITVPL----SSHFLSLQNTLTPFSHNCFSLLYFQCRR 52
AT +T KLT+ T Y +LP+ +PL SS L L TLT S R
Sbjct: 3 ATLPSTSKLTSSPSLQTLYRKLPLRLPLPSSSSSSHLPLPKTLTRLSSPRPLSH---HHR 59
Query: 53 RHVAARAKSDNGAELPSHYDFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSET 112
R +RA + NGAE HYDFDLFTIGAGSGGVRASRFA+NFGAS A+CELPF+TISS+T
Sbjct: 60 RRSVSRAAAPNGAESERHYDFDLFTIGAGSGGVRASRFASNFGASAAVCELPFATISSDT 119
Query: 113 TGGVGGTCVLRGCVPKKLLVYASKFSHEFDESNGFGWKYGTEPQHDWSTLIANKNAELQR 172
GGVGGTCVLRGCVPKKLLVYASK+SHEF+ES GFGWKY TEP+HDW+TLIANKNAELQR
Sbjct: 120 LGGVGGTCVLRGCVPKKLLVYASKYSHEFEESRGFGWKYETEPKHDWNTLIANKNAELQR 179
Query: 173 LTGIYKNILINAGITLIEGRGKIVDPHTVDVDGKLYSARHILISVGGRPFIPDIPGSEYA 232
LTGIYKNIL NAG+TLIEGRGKIVDPHTVDVDGKLY+AR+ILI+VGGRPFIPDIPG E+A
Sbjct: 180 LTGIYKNILKNAGVTLIEGRGKIVDPHTVDVDGKLYTARNILIAVGGRPFIPDIPGIEHA 239
Query: 233 IDSDAALDLPSKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRDFV 292
IDSDAALDLPSKPEKIAIVGGGYIALEFAGIF+GL S+VHVFIRQKKVLRGFDE++RDFV
Sbjct: 240 IDSDAALDLPSKPEKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQKKVLRGFDEEVRDFV 299
Query: 293 AEQMSLRGIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNTKNLGLEK 352
AEQMSLRGIEFHTEESPQAI+KS DGSLS+KTNKGTV+GFSHVMFATGR+PNTKNLGLE+
Sbjct: 300 AEQMSLRGIEFHTEESPQAIIKSADGSLSLKTNKGTVEGFSHVMFATGRKPNTKNLGLEE 359
Query: 353 VGVKMTKNGAIEVDEYSGTAVPSIWAVGDVTDRINLTPVALMEGGALAKTLFQAEPTKPD 412
VGVKM KNGAIEVDEYS T+VPSIWAVGDVTDRINLTPVALMEGGALAKTLF EPTKPD
Sbjct: 360 VGVKMDKNGAIEVDEYSRTSVPSIWAVGDVTDRINLTPVALMEGGALAKTLFGNEPTKPD 419
Query: 413 YSAVPSAVFSQPPIGQVGLSEEQAIQEYGDIDVFTANFRPLKATLSGLPDRIFMKLVLCA 472
Y AVPSAVFSQPPIGQVGL+EEQAI+EYGD+DVFTANFRPLKATLSGLPDR+FMKL++CA
Sbjct: 420 YRAVPSAVFSQPPIGQVGLTEEQAIEEYGDVDVFTANFRPLKATLSGLPDRVFMKLIVCA 479
Query: 473 KTNKVLGLHMCGEDAPEIVQGFAVAVKAGLTKADFDATVGVHPTAAEEFVTLRTPTRKIR 532
KTNKVLG+HMCGEDAPEI+QGFAVAVKAGLTKADFDATVG+HPTAAEEFVT+RTPTRKIR
Sbjct: 480 KTNKVLGVHMCGEDAPEIIQGFAVAVKAGLTKADFDATVGIHPTAAEEFVTMRTPTRKIR 539
Query: 533 KSPPSEGMTGPEVKAAAGV 551
K PSEG T EVKAAAGV
Sbjct: 540 KDSPSEGKTKDEVKAAAGV 558
|
Length = 558 |
| >gnl|CDD|235701 PRK06116, PRK06116, glutathione reductase; Validated | Back alignment and domain information |
|---|
Score = 674 bits (1742), Expect = 0.0
Identities = 228/459 (49%), Positives = 305/459 (66%), Gaps = 15/459 (3%)
Query: 71 YDFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKL 130
D+DL IG GSGG+ ++ AA +GA VA+ E +GGTCV GCVPKKL
Sbjct: 3 KDYDLIVIGGGSGGIASANRAAMYGAKVALIE----------AKRLGGTCVNVGCVPKKL 52
Query: 131 LVYASKFSHEF-DESNGFGWKYGTEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLI 189
+ Y ++ + F D + G+G+ E + DW+ LIAN++A + RL G Y+N L N G+ LI
Sbjct: 53 MWYGAQIAEAFHDYAPGYGFDVT-ENKFDWAKLIANRDAYIDRLHGSYRNGLENNGVDLI 111
Query: 190 EGRGKIVDPHTVDVDGKLYSARHILISVGGRPFIPDIPGSEYAIDSDAALDLPSKPEKIA 249
EG + VD HTV+V+G+ Y+A HILI+ GGRP IPDIPG+EY I SD L P+++A
Sbjct: 112 EGFARFVDAHTVEVNGERYTADHILIATGGRPSIPDIPGAEYGITSDGFFALEELPKRVA 171
Query: 250 IVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRDFVAEQMSLRGIEFHTEESP 309
+VG GYIA+EFAG+ +GL SE H+F+R LRGFD DIR+ + E+M +GI HT P
Sbjct: 172 VVGAGYIAVEFAGVLNGLGSETHLFVRGDAPLRGFDPDIRETLVEEMEKKGIRLHTNAVP 231
Query: 310 QAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNTKNLGLEKVGVKMTKNGAIEVDEYS 369
+A+ K+ DGSL++ G +++A GR PNT LGLE GVK+ + G I VDEY
Sbjct: 232 KAVEKNADGSLTLTLEDGETLTVDCLIWAIGREPNTDGLGLENAGVKLNEKGYIIVDEYQ 291
Query: 370 GTAVPSIWAVGDVTDRINLTPVALMEGGALAKTLFQAEP-TKPDYSAVPSAVFSQPPIGQ 428
T VP I+AVGDVT R+ LTPVA+ G L++ LF +P K DYS +P+ VFS PPIG
Sbjct: 292 NTNVPGIYAVGDVTGRVELTPVAIAAGRRLSERLFNNKPDEKLDYSNIPTVVFSHPPIGT 351
Query: 429 VGLSEEQAIQEYGD--IDVFTANFRPLKATLSGLPDRIFMKLVLCAKTNKVLGLHMCGED 486
VGL+EE+A ++YG+ + V+ ++F P+ L+G MKLV+ K KV+GLH G
Sbjct: 352 VGLTEEEAREQYGEDNVKVYRSSFTPMYTALTGHRQPCLMKLVVVGKEEKVVGLHGIGFG 411
Query: 487 APEIVQGFAVAVKAGLTKADFDATVGVHPTAAEEFVTLR 525
A E++QGFAVA+K G TKADFD TV +HPTAAEEFVT+R
Sbjct: 412 ADEMIQGFAVAIKMGATKADFDNTVAIHPTAAEEFVTMR 450
|
Length = 450 |
| >gnl|CDD|215281 PLN02507, PLN02507, glutathione reductase | Back alignment and domain information |
|---|
Score = 616 bits (1589), Expect = 0.0
Identities = 265/483 (54%), Positives = 342/483 (70%), Gaps = 7/483 (1%)
Query: 59 AKSDNGAELPSHYDFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGG 118
AK + +HYDFDLF IGAGSGGVRA+RF+ANFGA V ICELPF ISSE+ GGVGG
Sbjct: 12 AKVNADEANATHYDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSESIGGVGG 71
Query: 119 TCVLRGCVPKKLLVYASKFSHEFDESNGFGWKYGTEPQHDWSTLIANKNAELQRLTGIYK 178
TCV+RGCVPKK+LVY + F EF+++ +GW+ + +W L+ K E+ RL GIYK
Sbjct: 72 TCVIRGCVPKKILVYGATFGGEFEDAKNYGWEINEKVDFNWKKLLQKKTDEILRLNGIYK 131
Query: 179 NILINAGITLIEGRGKIVDPHTVDV---DG--KLYSARHILISVGGRPFIPDIPGSEYAI 233
+L NAG+ L EG GKIV P+ V+V DG Y+A+HILI+ G R P+IPG E AI
Sbjct: 132 RLLANAGVKLYEGEGKIVGPNEVEVTQLDGTKLRYTAKHILIATGSRAQRPNIPGKELAI 191
Query: 234 DSDAALDLPSKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRDFVA 293
SD AL L P++ ++GGGYIA+EFA I+ G+ + V +F R++ LRGFD+++R VA
Sbjct: 192 TSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGATVDLFFRKELPLRGFDDEMRAVVA 251
Query: 294 EQMSLRGIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNTKNLGLEKV 353
+ RGI H + + K T+G + V T+ G V+FATGR PNTK L LE V
Sbjct: 252 RNLEGRGINLHPRTNLTQLTK-TEGGIKVITDHGEEFVADVVLFATGRAPNTKRLNLEAV 310
Query: 354 GVKMTKNGAIEVDEYSGTAVPSIWAVGDVTDRINLTPVALMEGGALAKTLFQAEPTKPDY 413
GV++ K GA++VDEYS T +PSIWA+GDVT+RINLTPVALMEG AKT+F +PTKPDY
Sbjct: 311 GVELDKAGAVKVDEYSRTNIPSIWAIGDVTNRINLTPVALMEGTCFAKTVFGGQPTKPDY 370
Query: 414 SAVPSAVFSQPPIGQVGLSEEQAI-QEYGDIDVFTANFRPLKATLSGLPDRIFMKLVLCA 472
V AVF PP+ VGLSEE+A+ Q GDI VFT++F P+K T+SG ++ MKL++ A
Sbjct: 371 ENVACAVFCIPPLSVVGLSEEEAVEQAKGDILVFTSSFNPMKNTISGRQEKTVMKLIVDA 430
Query: 473 KTNKVLGLHMCGEDAPEIVQGFAVAVKAGLTKADFDATVGVHPTAAEEFVTLRTPTRKIR 532
+T+KVLG MCG DAPEI+QG AVA+K G TKA FD+TVG+HP+AAEEFVT+R+ TR++
Sbjct: 431 ETDKVLGASMCGPDAPEIMQGIAVALKCGATKAQFDSTVGIHPSAAEEFVTMRSVTRRVT 490
Query: 533 KSP 535
Sbjct: 491 AKG 493
|
Length = 499 |
| >gnl|CDD|213618 TIGR01424, gluta_reduc_2, glutathione-disulfide reductase, plant | Back alignment and domain information |
|---|
Score = 581 bits (1499), Expect = 0.0
Identities = 245/457 (53%), Positives = 316/457 (69%), Gaps = 13/457 (2%)
Query: 71 YDFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKL 130
+D+DLF IGAGSGGVRA+R AA GA VAI E VGGTCV+RGCVPKKL
Sbjct: 1 FDYDLFVIGAGSGGVRAARLAAALGAKVAIAEEFR----------VGGTCVIRGCVPKKL 50
Query: 131 LVYASKFSHEFDESNGFGWKYGTEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIE 190
+VYAS+F+ F+++ G+GW G + + DW L+A K+ E+ RL+G+Y+ L NAG L++
Sbjct: 51 MVYASQFAEHFEDAAGYGWTVG-KARFDWKKLLAAKDQEIARLSGLYRKGLANAGAELLD 109
Query: 191 GRGKIVDPHTVDV--DGKLYSARHILISVGGRPFIPDIPGSEYAIDSDAALDLPSKPEKI 248
GR ++V P+TV+V GK Y+A ILI+VGGRP P +PG E I S+ A LP+ P+ I
Sbjct: 110 GRAELVGPNTVEVLASGKTYTAEKILIAVGGRPPKPALPGHELGITSNEAFHLPTLPKSI 169
Query: 249 AIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRDFVAEQMSLRGIEFHTEES 308
I GGGYIA+EFAGIF GL + + R K++LRGFD+D+R +A + RGI E+S
Sbjct: 170 LIAGGGYIAVEFAGIFRGLGVQTTLIYRGKEILRGFDDDMRRGLAAALEERGIRILPEDS 229
Query: 309 PQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNTKNLGLEKVGVKMTKNGAIEVDEY 368
+I K DG L +K V+FATGR PNT LGLE GV++ GAI VDEY
Sbjct: 230 ITSISKDDDGRLKATLSKHEEIVADVVLFATGRSPNTNGLGLEAAGVRLNDLGAIAVDEY 289
Query: 369 SGTAVPSIWAVGDVTDRINLTPVALMEGGALAKTLFQAEPTKPDYSAVPSAVFSQPPIGQ 428
S T+ PSI+AVGDVTDRINLTPVA+ E A+T F PT D+ + +AVFSQPPIG
Sbjct: 290 SRTSTPSIYAVGDVTDRINLTPVAIHEATCFAETEFGNNPTSFDHDLIATAVFSQPPIGT 349
Query: 429 VGLSEEQAIQEYGDIDVFTANFRPLKATLSGLPDRIFMKLVLCAKTNKVLGLHMCGEDAP 488
VGL+EE+A +++GDI+V+ A FRP+KAT SG ++ MKLV+ AK +KVLG HM G DA
Sbjct: 350 VGLTEEEARRKFGDIEVYRAEFRPMKATFSGRQEKTLMKLVVDAKDDKVLGAHMVGPDAA 409
Query: 489 EIVQGFAVAVKAGLTKADFDATVGVHPTAAEEFVTLR 525
EI+QG A+A+K G TK DFD+TV VHPT+AEE VT+R
Sbjct: 410 EIIQGLAIALKMGATKDDFDSTVAVHPTSAEELVTMR 446
|
The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria [Energy metabolism, Electron transport]. Length = 446 |
| >gnl|CDD|224169 COG1249, Lpd, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion] | Back alignment and domain information |
|---|
Score = 438 bits (1130), Expect = e-150
Identities = 160/461 (34%), Positives = 244/461 (52%), Gaps = 17/461 (3%)
Query: 72 DFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLL 131
++D+ IGAG G A+ AA G VA+ E +GGTC+ GC+P K L
Sbjct: 4 EYDVVVIGAGPAGYVAAIRAAQLGLKVALVEK---------GERLGGTCLNVGCIPSKAL 54
Query: 132 VYASKFSHEFDE-SNGFGWKYGTEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIE 190
++A++ E + +G P+ D+ L+A K+ ++ LTG + +L G+ +I
Sbjct: 55 LHAAEVIEEARHAAKEYGISAE-VPKIDFEKLLARKDKVVRLLTGGVEGLLKKNGVDVIR 113
Query: 191 GRGKIVDPHTVDVDG---KLYSARHILISVGGRPFIPDIPGSEYA--IDSDAALDLPSKP 245
G + VDPHTV+V G + +A +I+I+ G RP IP PG + A +DS AL L P
Sbjct: 114 GEARFVDPHTVEVTGEDKETITADNIIIATGSRPRIPPGPGIDGARILDSSDALFLLELP 173
Query: 246 EKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRDFVAEQMSLRGIEFHT 305
+ + IVGGGYI LEFA +F+ L S+V V R ++L G D +I + +Q+ G++
Sbjct: 174 KSLVIVGGGYIGLEFASVFAALGSKVTVVERGDRILPGEDPEISKELTKQLEKGGVKILL 233
Query: 306 EESPQAILKSTDG-SLSVKTNKGTVDGFSHVMFATGRRPNTKNLGLEKVGVKMTKNGAIE 364
A+ K DG ++++ +G V+ A GR+PNT LGLE GV++ G I+
Sbjct: 234 NTKVTAVEKKDDGVLVTLEDGEGGTIEADAVLVAIGRKPNTDGLGLENAGVELDDRGFIK 293
Query: 365 VDEYSGTAVPSIWAVGDVTDRINLTPVALMEGGALAKTLFQAEPTKPDYSAVPSAVFSQP 424
VD+ T VP I+A+GDV L VA+ EG A+ + + T DY +PS VF+ P
Sbjct: 294 VDDQMTTNVPGIYAIGDVIGGPMLAHVAMAEGRIAAENIAGGKRTPIDYRLIPSVVFTDP 353
Query: 425 PIGQVGLSEEQAIQEYGDIDVFTANFRPLKATLSGLPDRIFMKLVLCAKTNKVLGLHMCG 484
I VGL+EE+A + D V F ++ F+KLV+ +T ++LG H+ G
Sbjct: 354 EIASVGLTEEEAKEAGIDYKVGKFPFAANGRAITMGETDGFVKLVVDKETGRILGAHIVG 413
Query: 485 EDAPEIVQGFAVAVKAGLTKADFDATVGVHPTAAEEFVTLR 525
A E++ A+A++ G T D T+ HPT +E
Sbjct: 414 PGASELINEIALAIEMGATAEDLALTIHAHPTLSEALKEAA 454
|
Length = 454 |
| >gnl|CDD|130488 TIGR01421, gluta_reduc_1, glutathione-disulfide reductase, animal/bacterial | Back alignment and domain information |
|---|
Score = 428 bits (1102), Expect = e-146
Identities = 194/461 (42%), Positives = 280/461 (60%), Gaps = 17/461 (3%)
Query: 70 HYDFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKK 129
HYD+ IG GSGG+ ++R AA GA + E +GGTCV GCVPKK
Sbjct: 2 HYDY--LVIGGGSGGIASARRAAEHGAKALLVE----------AKKLGGTCVNVGCVPKK 49
Query: 130 LLVYASKFSHEFDESNGFGWKYGTEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLI 189
++ YAS + ++ +G+ E +W L ++A + RL GIY+ L + +I
Sbjct: 50 VMWYASDLAERMHDAADYGFYQNLENTFNWPELKEKRDAYVDRLNGIYQKNLEKNKVDVI 109
Query: 190 EGRGKIVDPHTVDVDGKLYSARHILISVGGRPFIPD-IPGSEYAIDSDAALDLPSKPEKI 248
G + TV+V+G+ Y+A HILI+ GG+P P+ IPG+E DSD L P+++
Sbjct: 110 FGHARFTKDGTVEVNGRDYTAPHILIATGGKPSFPENIPGAELGTDSDGFFALEELPKRV 169
Query: 249 AIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRDFVAEQMSLRGIEFHTEES 308
IVG GYIA+E AG+ GL SE H+ IR ++VLR FD I + + E+ GI H
Sbjct: 170 VIVGAGYIAVELAGVLHGLGSETHLVIRHERVLRSFDSMISETITEEYEKEGINVHKLSK 229
Query: 309 PQAILKSTDGSLSVKTNKG-TVDGFSHVMFATGRRPNTKNLGLEKVGVKMTKNGAIEVDE 367
P + K+ +G L + G ++D +++A GR+PNTK LGLE VG+K+ + G I VDE
Sbjct: 230 PVKVEKTVEGKLVIHFEDGKSIDDVDELIWAIGRKPNTKGLGLENVGIKLNEKGQIIVDE 289
Query: 368 YSGTAVPSIWAVGDVTDRINLTPVALMEGGALAKTLFQAEPT-KPDYSAVPSAVFSQPPI 426
Y T VP I+A+GDV ++ LTPVA+ G L++ LF + K DY+ VP+ VFS PPI
Sbjct: 290 YQNTNVPGIYALGDVVGKVELTPVAIAAGRKLSERLFNGKTDDKLDYNNVPTVVFSHPPI 349
Query: 427 GQVGLSEEQAIQEYG--DIDVFTANFRPLKATLSGLPDRIFMKLVLCAKTNKVLGLHMCG 484
G +GL+E++AI++YG +I V+ ++F P+ ++ + MKLV K KV+GLH G
Sbjct: 350 GTIGLTEKEAIEKYGKENIKVYNSSFTPMYYAMTSEKQKCRMKLVCAGKEEKVVGLHGIG 409
Query: 485 EDAPEIVQGFAVAVKAGLTKADFDATVGVHPTAAEEFVTLR 525
+ E++QGFAVA+K G TKADFD TV +HPT++EE VT+R
Sbjct: 410 DGVDEMLQGFAVAIKMGATKADFDNTVAIHPTSSEELVTMR 450
|
The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria [Energy metabolism, Electron transport]. Length = 450 |
| >gnl|CDD|233412 TIGR01438, TGR, thioredoxin and glutathione reductase selenoprotein | Back alignment and domain information |
|---|
Score = 360 bits (926), Expect = e-119
Identities = 183/476 (38%), Positives = 256/476 (53%), Gaps = 21/476 (4%)
Query: 71 YDFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSE-TTGGVGGTCVLRGCVPKK 129
YD+DL IG GSGG+ A++ AA +GA V + L F T + T G+GGTCV GC+PKK
Sbjct: 1 YDYDLIVIGGGSGGLAAAKEAAAYGAKVML--LDFVTPTPLGTRWGIGGTCVNVGCIPKK 58
Query: 130 LLVYASKFSHEFDESNGFGWKYGTEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLI 189
L+ A+ +S +GWK +HDW L+ + L Y+ L +
Sbjct: 59 LMHQAALLGQALKDSRNYGWKVEETVKHDWKRLVEAVQNHIGSLNWGYRVALREKKVKYE 118
Query: 190 EGRGKIVDPHTVDVDGKL-----YSARHILISVGGRPFIPDIPGS-EYAIDSDAALDLPS 243
+ VD H + K YSA LI+ G RP P IPG+ E I SD LP
Sbjct: 119 NAYAEFVDKHRIKATNKKGKEKIYSAERFLIATGERPRYPGIPGAKELCITSDDLFSLPY 178
Query: 244 KPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRDFVAEQMSLRGIEF 303
P K +VG Y+ALE AG +G+ +V V +R +LRGFD+D + V E M G++F
Sbjct: 179 CPGKTLVVGASYVALECAGFLAGIGLDVTVMVRS-ILLRGFDQDCANKVGEHMEEHGVKF 237
Query: 304 HTEESPQAILKSTDGSLSVKTNK--GTVDGFSHVMFATGRRPNTKNLGLEKVGVKMTK-N 360
+ P + + L T+ G + + V+ A GR T+ L LE VGVK+ K
Sbjct: 238 KRQFVPIKVEQIEAKVLVEFTDSTNGIEEEYDTVLLAIGRDACTRKLNLENVGVKINKKT 297
Query: 361 GAIEVDEYSGTAVPSIWAVGDVT-DRINLTPVALMEGGALAKTLFQAEPTKPDYSAVPSA 419
G I DE T VP I+AVGD+ D+ LTPVA+ G LA+ LF+ DY VP+
Sbjct: 298 GKIPADEEEQTNVPYIYAVGDILEDKPELTPVAIQAGRLLAQRLFKGSTVICDYENVPTT 357
Query: 420 VFSQPPIGQVGLSEEQAIQEYGD--IDVFTANFRPLKATLSGLPD--RIFMKLVLCAK-- 473
VF+ G GLSEE+A++++G+ ++VF + F PL+ T+ + + + KLV C K
Sbjct: 358 VFTPLEYGACGLSEEKAVEKFGEENVEVFHSYFWPLEWTIPSRDNHNKCYAKLV-CNKKE 416
Query: 474 TNKVLGLHMCGEDAPEIVQGFAVAVKAGLTKADFDATVGVHPTAAEEFVTLRTPTR 529
+V+G H+ G +A E+ QGFA A++ GLTK D D T+G+HP AE F TL R
Sbjct: 417 NERVVGFHVVGPNAGEVTQGFAAALRCGLTKKDLDNTIGIHPVCAEVFTTLSVTKR 472
|
This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity. Length = 484 |
| >gnl|CDD|200098 TIGR01423, trypano_reduc, trypanothione-disulfide reductase | Back alignment and domain information |
|---|
Score = 359 bits (922), Expect = e-119
Identities = 191/478 (39%), Positives = 274/478 (57%), Gaps = 29/478 (6%)
Query: 73 FDLFTIGAGSGGVRASRFAAN-FGASVAICEL------PFSTISSETTGGVGGTCVLRGC 125
FDL IGAGSGG+ A AA + VA+ ++ PF +GGTCV GC
Sbjct: 4 FDLVVIGAGSGGLEAGWNAATLYKKRVAVVDVQTHHGPPF-------YAALGGTCVNVGC 56
Query: 126 VPKKLLVYASKFSHEFDESNGFGWKY-GTEPQHDWSTLIANKNAELQRLTGIYKNILINA 184
VPKKL+V +++ ES GFGW++ + + +W LIA KN + + Y+ + +
Sbjct: 57 VPKKLMVTGAQYMDTLRESAGFGWEFDRSSVKANWKALIAAKNKAVLDINKSYEGMFADT 116
Query: 185 -GITLIEGRGKIVDPHTVDV----DGK-----LYSARHILISVGGRPFIPDIPGSEYAID 234
G+T G G + D + V V D K A HIL++ G P + IPG E+ I
Sbjct: 117 EGLTFFLGWGALEDKNVVLVRESADPKSAVKERLQAEHILLATGSWPQMLGIPGIEHCIS 176
Query: 235 SDAALDLPSKPEKIAIVGGGYIALEFAGIFSGLTS---EVHVFIRQKKVLRGFDEDIRDF 291
S+ A L P ++ VGGG+I++EFAGIF+ +V + R +LRGFD +R
Sbjct: 177 SNEAFYLDEPPRRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNNMILRGFDSTLRKE 236
Query: 292 VAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNTKNLGLE 351
+ +Q+ GI T E+P + + DGS V G VM A GR P T+ L L+
Sbjct: 237 LTKQLRANGINIMTNENPAKVTLNADGSKHVTFESGKTLDVDVVMMAIGRVPRTQTLQLD 296
Query: 352 KVGVKMTKNGAIEVDEYSGTAVPSIWAVGDVTDRINLTPVALMEGGALAKTLFQAEPTKP 411
KVGV++TK GAI+VDE+S T VP+I+A+GDVTDR+ LTPVA+ EG A T+F +P K
Sbjct: 297 KVGVELTKKGAIQVDEFSRTNVPNIYAIGDVTDRVMLTPVAINEGAAFVDTVFGNKPRKT 356
Query: 412 DYSAVPSAVFSQPPIGQVGLSEEQAIQEYGDIDVFTANFRPLKATLSGLPDRIFM-KLVL 470
D++ V SAVFS PPIG GL EE A +++ + V+ ++F PL +SG + F+ K+V
Sbjct: 357 DHTRVASAVFSIPPIGTCGLVEEDAAKKFEKVAVYESSFTPLMHNISGSKYKKFVAKIVT 416
Query: 471 CAKTNKVLGLHMCGEDAPEIVQGFAVAVKAGLTKADFDATVGVHPTAAEEFVTLRTPT 528
VLG+H+ G+ +PEI+Q + +K +DF T+GVHPT+AEE ++RTP+
Sbjct: 417 NHADGTVLGVHLLGDSSPEIIQAVGICLKLNAKISDFYNTIGVHPTSAEELCSMRTPS 474
|
Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase. Length = 486 |
| >gnl|CDD|235774 PRK06292, PRK06292, dihydrolipoamide dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 337 bits (867), Expect = e-110
Identities = 148/458 (32%), Positives = 222/458 (48%), Gaps = 26/458 (5%)
Query: 72 DFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGV-GGTCVLRGCVPKKL 130
+D+ IGAG G A+R AA G VA+ E G GGTC+ GC+P K
Sbjct: 3 KYDVIVIGAGPAGYVAARRAAKLGKKVALIE-----------KGPLGGTCLNVGCIPSKA 51
Query: 131 LVYASKFSHEFDESNGFGWKYGTEPQHDWSTLIANKNAELQRLT-GIYKNILINAGITLI 189
L+ A++ HE + FG P+ D+ ++A E R G+ + + I I
Sbjct: 52 LIAAAEAFHEAKHAEEFGIH-ADGPKIDFKKVMARVRRERDRFVGGVVEGLEKKPKIDKI 110
Query: 190 EGRGKIVDPHTVDVDGKLYSARHILISVGGRPFIPDIPGSEYA-----IDSDAALDLPSK 244
+G + VDP+TV+V+G+ A++I+I+ G R +P IPG + SD A +L
Sbjct: 111 KGTARFVDPNTVEVNGERIEAKNIVIATGSR--VPPIPGVWLILGDRLLTSDDAFELDKL 168
Query: 245 PEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRDFVAEQMSLRGIEFH 304
P+ +A++GGG I LE S L +V VF R ++L D ++ + +S +
Sbjct: 169 PKSLAVIGGGVIGLELGQALSRLGVKVTVFERGDRILPLEDPEVSKQAQKILSKE-FKIK 227
Query: 305 TEESPQAILKSTDGSLSV--KTNKGTVDGFSHVMFATGRRPNTKNLGLEKVGVKMTKNGA 362
++ KS D + K K +V+ ATGRRPNT LGLE G+++ + G
Sbjct: 228 LGAKVTSVEKSGDEKVEELEKGGKTETIEADYVLVATGRRPNTDGLGLENTGIELDERGR 287
Query: 363 IEVDEYSGTAVPSIWAVGDVTDRINLTPVALMEGGALAKTLFQAEPTKPDYSAVPSAVFS 422
VDE++ T+VP I+A GDV + L A EG A+ Y +PS VF+
Sbjct: 288 PVVDEHTQTSVPGIYAAGDVNGKPPLLHEAADEGRIAAENAAGDVAGGVRYHPIPSVVFT 347
Query: 423 QPPIGQVGLSEEQAIQEYGDIDVFTANFRPL-KATLSGLPDRIFMKLVLCAKTNKVLGLH 481
P I VGL+EE+ D V F +A + G + F+K+ KT ++LG H
Sbjct: 348 DPQIASVGLTEEELKAAGIDYVVGEVPFEAQGRARVMGK-NDGFVKVYADKKTGRLLGAH 406
Query: 482 MCGEDAPEIVQGFAVAVKAGLTKADFDATVGVHPTAAE 519
+ G DA ++ A A++ GLT D HPT +E
Sbjct: 407 IIGPDAEHLIHLLAWAMQQGLTVEDLLRMPFYHPTLSE 444
|
Length = 460 |
| >gnl|CDD|185420 PTZ00058, PTZ00058, glutathione reductase; Provisional | Back alignment and domain information |
|---|
Score = 321 bits (824), Expect = e-103
Identities = 165/523 (31%), Positives = 258/523 (49%), Gaps = 84/523 (16%)
Query: 72 DFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLL 131
+DL IG GSGG+ A+R AA A VA+ E + +GGTCV GCVPKK++
Sbjct: 48 VYDLIVIGGGSGGMAAARRAARNKAKVALVEKDY----------LGGTCVNVGCVPKKIM 97
Query: 132 VYASKFSHEFDESNGFGWKYGTEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIEG 191
A+ + S +G + T+ + L+ ++ ++RL IY+ L + EG
Sbjct: 98 FNAASIHDILENSRHYG--FDTQFSFNLPLLVERRDKYIRRLNDIYRQNLKKDNVEYFEG 155
Query: 192 RGKIVDPHTVDV-----------------------------DGKLYSARHILISVGGRPF 222
+G ++ + V + DG++ ++ILI+VG +P
Sbjct: 156 KGSLLSENQVLIKKVSQVDGEADESDDDEVTIVSAGVSQLDDGQVIEGKNILIAVGNKPI 215
Query: 223 IPDIPGSEYAIDSDAALDLPSKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLR 282
PD+ G E+ I SD + + ++I I G GYIA+E + + L +E ++F R ++LR
Sbjct: 216 FPDVKGKEFTISSDDFFKI-KEAKRIGIAGSGYIAVELINVVNRLGAESYIFARGNRLLR 274
Query: 283 GFDEDIRDFVAEQMSLRGIEFHTEESPQAILK-STDGSLSVKTNKGTVDGFSHVMFATGR 341
FDE I + + M I T + + I K ++ + F +V++ GR
Sbjct: 275 KFDETIINELENDMKKNNINIITHANVEEIEKVKEKNLTIYLSDGRKYEHFDYVIYCVGR 334
Query: 342 RPNTKNLGLEKVGVKMTKNGAIEVDEYSGTAVPSIWAVGDV------------------- 382
PNT++L L+ + +K T G I+VD+ T+V I+AVGD
Sbjct: 335 SPNTEDLNLKALNIK-TPKGYIKVDDNQRTSVKHIYAVGDCCMVKKNQEIEDLNLLKLYN 393
Query: 383 ---------------TDRINLTPVALMEGGALAKTLFQAEPTKPDYSAVPSAVFSQPPIG 427
+ LTPVA+ G LA LF +Y +PS +FS PPIG
Sbjct: 394 EEPYLKKKENTSGESYYNVQLTPVAINAGRLLADRLFGPFSRTTNYKLIPSVIFSHPPIG 453
Query: 428 QVGLSEEQAIQEYG--DIDVFTANFRPLKATLSGL----PDRIFMKLVLCAKTNKVLGLH 481
+GLSE++AI YG ++ ++ + F L ++ + ++ ++KLV K + GLH
Sbjct: 454 TIGLSEQEAIDIYGKENVKIYESRFTNLFFSVYDMDPAQKEKTYLKLVCVGKEELIKGLH 513
Query: 482 MCGEDAPEIVQGFAVAVKAGLTKADFDATVGVHPTAAEEFVTL 524
+ G +A EI+QGFAVA+K TKADFD T+ +HPTAAEEFVT+
Sbjct: 514 IVGLNADEILQGFAVALKMNATKADFDETIPIHPTAAEEFVTM 556
|
Length = 561 |
| >gnl|CDD|233368 TIGR01350, lipoamide_DH, dihydrolipoamide dehydrogenase | Back alignment and domain information |
|---|
Score = 311 bits (798), Expect = e-100
Identities = 154/458 (33%), Positives = 239/458 (52%), Gaps = 25/458 (5%)
Query: 73 FDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLV 132
+D+ IG G GG A+ AA G VA+ E + +GGTC+ GC+P K L+
Sbjct: 2 YDVIVIGGGPGGYVAAIRAAQLGLKVALVEKEY----------LGGTCLNVGCIPTKALL 51
Query: 133 YASKFSHEFDESNGFGWKYGTEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIEGR 192
++++ E + G + DW + KN +++L G +L +T+I+G
Sbjct: 52 HSAEVYDEIKHAKDLGIEVEN-VSVDWEKMQKRKNKVVKKLVGGVSGLLKKNKVTVIKGE 110
Query: 193 GKIVDPHTVDVDGK----LYSARHILISVGGRPFIPDIP---GSEYAIDSDAALDLPSKP 245
K +DP TV V G+ A++I+I+ G RP P + I S AL+L P
Sbjct: 111 AKFLDPGTVSVTGENGEETLEAKNIIIATGSRPRSLPGPFDFDGKVVITSTGALNLEEVP 170
Query: 246 EKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRDFVAEQMSLRGIEFHT 305
E + I+GGG I +EFA IF+ L S+V V ++L G D ++ + + + +G++ T
Sbjct: 171 ESLVIIGGGVIGVEFASIFASLGSKVTVIEMLDRILPGEDAEVSKVLQKALKKKGVKILT 230
Query: 306 EESPQAILKSTDGSLSVKTNKG---TVDGFSHVMFATGRRPNTKNLGLEKVGVKMTKNGA 362
A+ K+ D ++ + G T+ G V+ A GR+PNT+ LGLEK+GV++ + G
Sbjct: 231 NTKVTAVEKN-DDQVTYENKGGETETLTG-EKVLVAVGRKPNTEGLGLEKLGVELDERGR 288
Query: 363 IEVDEYSGTAVPSIWAVGDVTDRINLTPVALMEGGALAKTLFQAEPTKPDYSAVPSAVFS 422
I VDEY T VP I+A+GDV L VA EG A+ + EP DY AVPS +++
Sbjct: 289 IVVDEYMRTNVPGIYAIGDVIGGPMLAHVASHEGIVAAENIAGKEPAHIDYDAVPSVIYT 348
Query: 423 QPPIGQVGLSEEQAIQEYGDIDVFTANFRPL-KATLSGLPDRIFMKLVLCAKTNKVLGLH 481
P + VGL+EEQA + D+ + F KA G D F+K++ KT ++LG H
Sbjct: 349 DPEVASVGLTEEQAKEAGYDVKIGKFPFAANGKALALGETDG-FVKIIADKKTGEILGAH 407
Query: 482 MCGEDAPEIVQGFAVAVKAGLTKADFDATVGVHPTAAE 519
+ G A E++ A+A++ T + T+ HPT +E
Sbjct: 408 IIGPHATELISEAALAMELEGTVEELARTIHPHPTLSE 445
|
This model describes dihydrolipoamide dehydrogenase, a flavoprotein that acts in a number of ways. It is the E3 component of dehydrogenase complexes for pyruvate, 2-oxoglutarate, 2-oxoisovalerate, and acetoin. It can also serve as the L protein of the glycine cleavage system. This family includes a few members known to have distinct functions (ferric leghemoglobin reductase and NADH:ferredoxin oxidoreductase) but that may be predicted by homology to act as dihydrolipoamide dehydrogenase as well. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide. Length = 460 |
| >gnl|CDD|185416 PTZ00052, PTZ00052, thioredoxin reductase; Provisional | Back alignment and domain information |
|---|
Score = 309 bits (794), Expect = 2e-99
Identities = 186/502 (37%), Positives = 263/502 (52%), Gaps = 41/502 (8%)
Query: 71 YDFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTG---GVGGTCVLRGCVP 127
+ +DL IG GSGG+ A++ AA G VA+ F + T G G+GGTCV GCVP
Sbjct: 4 FMYDLVVIGGGSGGMAAAKEAAAHGKKVAL----FDYVKPSTQGTKWGLGGTCVNVGCVP 59
Query: 128 KKLLVYASKFSHEFD-ESNGFGWKYGTEPQHDWSTLIANKNAELQRLTGIYKNILINAGI 186
KKL+ YA+ F +S +GWK + +W L+ ++ L Y+ L ++ +
Sbjct: 60 KKLMHYAANIGSIFHHDSQMYGWKTSS--SFNWGKLVTTVQNHIRSLNFSYRTGLRSSKV 117
Query: 187 TLIEGRGKIVDPHTVDVDG----KLYSARHILISVGGRPFIP-DIPGS-EYAIDSDAALD 240
I G K+ D HTV + +A++ILI+ GGRP IP D+PG+ EY+I SD
Sbjct: 118 EYINGLAKLKDEHTVSYGDNSQEETITAKYILIATGGRPSIPEDVPGAKEYSITSDDIFS 177
Query: 241 LPSKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRDFVAEQMSLRG 300
L P K IVG YI LE AG + L +V V +R LRGFD + V E M +G
Sbjct: 178 LSKDPGKTLIVGASYIGLETAGFLNELGFDVTVAVRSI-PLRGFDRQCSEKVVEYMKEQG 236
Query: 301 IEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNTKNLGLEKVGVKMTKN 360
F P I K D + V + GT + F V++ATGR+P+ K L L +GV + K+
Sbjct: 237 TLFLEGVVPINIEKMDD-KIKVLFSDGTTELFDTVLYATGRKPDIKGLNLNAIGVHVNKS 295
Query: 361 GAIEVDEYSGTAVPSIWAVGDVT-DRINLTPVALMEGGALAKTLFQAEPTKPDYSAVPSA 419
I T +P+I+AVGDV R LTPVA+ G LA+ LF+ DY+ +P+
Sbjct: 296 NKIIAPNDC-TNIPNIFAVGDVVEGRPELTPVAIKAGILLARRLFKQSNEFIDYTFIPTT 354
Query: 420 VFSQPPIGQVGLSEEQAIQEYG--DIDVFTANFRPLKATLS---------------GLPD 462
+F+ G G S E AI +YG DI+ + F L+ +
Sbjct: 355 IFTPIEYGACGYSSEAAIAKYGEDDIEEYLQEFNTLEIAAVHREKHERARKDEYDFDVSS 414
Query: 463 RIFMKLVLCAKT--NKVLGLHMCGEDAPEIVQGFAVAVKAGLTKADFDATVGVHPTAAEE 520
KLV C K+ NKV+G H G +A EI QGF++A+K G K+DFD+ +G+HPT AE
Sbjct: 415 NCLAKLV-CVKSEDNKVVGFHFVGPNAGEITQGFSLALKLGAKKSDFDSMIGIHPTDAEV 473
Query: 521 FVTLRTPTRKIRKSPPSEGMTG 542
F+ L + TR+ +S ++G G
Sbjct: 474 FMNL-SVTRRSGESFAAKGGCG 494
|
Length = 499 |
| >gnl|CDD|233700 TIGR02053, MerA, mercuric reductase | Back alignment and domain information |
|---|
Score = 292 bits (749), Expect = 4e-93
Identities = 160/457 (35%), Positives = 231/457 (50%), Gaps = 25/457 (5%)
Query: 73 FDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLV 132
+DL IG+G+ A+ AA GASVA+ E G +GGTCV GCVP K+L+
Sbjct: 1 YDLVIIGSGAAAFAAAIKAAELGASVAMVE----------RGPLGGTCVNVGCVPSKMLL 50
Query: 133 YASKFSHEFDESNGFGWKYGTEPQHDWSTLIANKN---AELQRLTGIYKNILINAGITLI 189
A++ +H + FG D+ L+ K EL+ Y+++L + G+ +
Sbjct: 51 RAAEVAH-YARKPPFG-GLAATVAVDFGELLEGKREVVEELRHEK--YEDVLSSYGVDYL 106
Query: 190 EGRGKIVDPHTVDVDGK--LYSARHILISVGGRPFIPDIPGSEYA--IDSDAALDLPSKP 245
GR + DP TV VD + A+ LI+ G RP IP IPG + A + S+ AL L P
Sbjct: 107 RGRARFKDPKTVKVDLGREVRGAKRFLIATGARPAIPPIPGLKEAGYLTSEEALALDRIP 166
Query: 246 EKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRDFVAEQMSLRGIEFHT 305
E +A++GGG I +E A F+ L SEV + R ++L + +I V E ++ GIE T
Sbjct: 167 ESLAVIGGGAIGVELAQAFARLGSEVTILQRSDRLLPREEPEISAAVEEALAEEGIEVVT 226
Query: 306 EESPQAILKSTDGSLSVKTNKGTVDG---FSHVMFATGRRPNTKNLGLEKVGVKMTKNGA 362
+A+ G + + K G ++ ATGRRPNT LGLEK GVK+ + G
Sbjct: 227 SAQVKAVSVRGGGKI-ITVEKPGGQGEVEADELLVATGRRPNTDGLGLEKAGVKLDERGG 285
Query: 363 IEVDEYSGTAVPSIWAVGDVTDRINLTPVALMEGGALAKTLFQAEPTKPDYSAVPSAVFS 422
I VDE T+ P I+A GDVT + L VA EG A+ K D +P VF+
Sbjct: 286 ILVDETLRTSNPGIYAAGDVTGGLQLEYVAAKEGVVAAENALGGANAKLDLLVIPRVVFT 345
Query: 423 QPPIGQVGLSEEQAIQEYGDIDVFTANFRPLKATLSGLPDRIFMKLVLCAKTNKVLGLHM 482
P + VGL+E +A + + D T + R F+KLV T KVLG+ +
Sbjct: 346 DPAVASVGLTEAEAQKAGIECDCRTLPLTNVPRARINRDTRGFIKLVAEPGTGKVLGVQV 405
Query: 483 CGEDAPEIVQGFAVAVKAGLTKADFDATVGVHPTAAE 519
+A E++ A+A++AG+T D T+ PT AE
Sbjct: 406 VAPEAAEVINEAALAIRAGMTVDDLIDTLHPFPTMAE 442
|
This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH [Cellular processes, Detoxification]. Length = 463 |
| >gnl|CDD|235787 PRK06370, PRK06370, mercuric reductase; Validated | Back alignment and domain information |
|---|
Score = 292 bits (749), Expect = 4e-93
Identities = 142/458 (31%), Positives = 214/458 (46%), Gaps = 27/458 (5%)
Query: 73 FDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLV 132
+D IGAG G + AA G VA+ E G +GGTCV GCVP K L+
Sbjct: 6 YDAIVIGAGQAGPPLAARAAGLGMKVALIE----------RGLLGGTCVNTGCVPTKTLI 55
Query: 133 YASKFSHEFDESNGFGWKYGTEPQHDWSTLIANKNA-ELQRLTGIYKNILINAGITLIEG 191
+++ +H + +G G D+ ++A K + G + + G+ + G
Sbjct: 56 ASARAAHLARRAAEYGVSVGGPVSVDFKAVMARKRRIRARSRHGSEQWLRGLEGVDVFRG 115
Query: 192 RGKIVDPHTVDVDGKLYSARHILISVGGRPFIPDIPGSEYA--IDSDAALDLPSKPEKIA 249
+ P+TV V G+ A+ I I+ G R IP IPG + + ++ L PE +
Sbjct: 116 HARFESPNTVRVGGETLRAKRIFINTGARAAIPPIPGLDEVGYLTNETIFSLDELPEHLV 175
Query: 250 IVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRDFVAEQMSLRGIEFHTEESP 309
I+GGGYI LEFA +F SEV V R ++L DED+ V E + GI+
Sbjct: 176 IIGGGYIGLEFAQMFRRFGSEVTVIERGPRLLPREDEDVAAAVREILEREGIDVRLNAEC 235
Query: 310 QAILKSTDG---SLSVKTNKGTVDGFSHVMFATGRRPNTKNLGLEKVGVKMTKNGAIEVD 366
+ + DG L + G SH++ A GR PNT +LGLE GV+ G I+VD
Sbjct: 236 IRVERDGDGIAVGLDCNGGAPEITG-SHILVAVGRVPNTDDLGLEAAGVETDARGYIKVD 294
Query: 367 EYSGTAVPSIWAVGDVTDRINLTPVALMEGGALAKTLFQAEPTKPDYSAVPSAVFSQPPI 426
+ T P I+A GD R T A + +A L K VP A ++ PP+
Sbjct: 295 DQLRTTNPGIYAAGDCNGRGAFTHTAYNDARIVAANLLDGGRRKVSDRIVPYATYTDPPL 354
Query: 427 GQVGLSEEQAIQEYG-DIDVFTANFRPLK----ATLSGLPDRIFMKLVLCAKTNKVLGLH 481
+VG++E +A ++ G + V T RP+ A G + FMK+V+ A T+++LG
Sbjct: 355 ARVGMTEAEA-RKSGRRVLVGT---RPMTRVGRAVEKG-ETQGFMKVVVDADTDRILGAT 409
Query: 482 MCGEDAPEIVQGFAVAVKAGLTKADFDATVGVHPTAAE 519
+ G E++ A+ AG + +HPT +E
Sbjct: 410 ILGVHGDEMIHEILDAMYAGAPYTTLSRAIHIHPTVSE 447
|
Length = 463 |
| >gnl|CDD|235798 PRK06416, PRK06416, dihydrolipoamide dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Score = 291 bits (748), Expect = 7e-93
Identities = 163/474 (34%), Positives = 242/474 (51%), Gaps = 57/474 (12%)
Query: 72 DFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLL 131
++D+ IGAG GG A+ AA G VAI E +GGTC+ RGC+P K L
Sbjct: 4 EYDVIVIGAGPGGYVAAIRAAQLGLKVAIVE----------KEKLGGTCLNRGCIPSKAL 53
Query: 132 VYASKFSHEFDESNGFGWKYGTEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIEG 191
++A++ + E S FG K D+ + KN + RLTG + +L + +I G
Sbjct: 54 LHAAERADEARHSEDFGIKAENV-GIDFKKVQEWKNGVVNRLTGGVEGLLKKNKVDIIRG 112
Query: 192 RGKIVDPHTVDVD----GKLYSARHILISVGGRPFIPDIPGSEYA----IDSDAALDLPS 243
K+VDP+TV V + Y+A++I+++ G RP +PG E SD AL+L
Sbjct: 113 EAKLVDPNTVRVMTEDGEQTYTAKNIILATGSRPRE--LPGIEIDGRVIWTSDEALNLDE 170
Query: 244 KPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRDFVAEQMSLRGIEF 303
P+ + ++GGGYI +EFA ++ L +EV + ++L G D++I + RGI+
Sbjct: 171 VPKSLVVIGGGYIGVEFASAYASLGAEVTIVEALPRILPGEDKEISKLAERALKKRGIKI 230
Query: 304 HTEESPQAILKS---TDGSLSVKTNKG----TVDGFSHVMFATGRRPNTKNLGLEKVGVK 356
T A K TD ++V G T++ +V+ A GRRPNT+NLGLE++GVK
Sbjct: 231 KTG----AKAKKVEQTDDGVTVTLEDGGKEETLE-ADYVLVAVGRRPNTENLGLEELGVK 285
Query: 357 MTKNGAIEVDEYSGTAVPSIWAVGDVTDRINLTPVALMEGGALAKTLFQAE-----PTKP 411
+ G IEVDE T VP+I+A+GD+ L A EG + AE P
Sbjct: 286 TDR-GFIEVDEQLRTNVPNIYAIGDIVGGPMLAHKASAEG------IIAAEAIAGNPHPI 338
Query: 412 DYSAVPSAVFSQPPIGQVGLSEEQAIQEYGDIDV----FTANFRP--LKATLSGLPDRIF 465
DY +P+ ++ P + VGL+E +A +E D+ V F N + L T G F
Sbjct: 339 DYRGIPAVTYTHPEVASVGLTEAKAKEEGFDVKVVKFPFAGNGKALALGET-DG-----F 392
Query: 466 MKLVLCAKTNKVLGLHMCGEDAPEIVQGFAVAVKAGLTKADFDATVGVHPTAAE 519
+KL+ K +VLG HM G A E++Q +A+ T D T+ HPT +E
Sbjct: 393 VKLIFDKKDGEVLGAHMVGARASELIQEAQLAINWEATPEDLALTIHPHPTLSE 446
|
Length = 462 |
| >gnl|CDD|181142 PRK07846, PRK07846, mycothione reductase; Reviewed | Back alignment and domain information |
|---|
Score = 239 bits (612), Expect = 4e-73
Identities = 129/451 (28%), Positives = 197/451 (43%), Gaps = 39/451 (8%)
Query: 72 DFDLFTIGAGSGG-VRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKL 130
+DL IG GSG + RFA +AI E G GGTC+ GC+P K+
Sbjct: 1 HYDLIIIGTGSGNSILDERFA---DKRIAIVE----------KGTFGGTCLNVGCIPTKM 47
Query: 131 LVYASKFSHEFDESNGFGWKYGTEPQHDWSTL----------IANKNAELQRLTGIYKNI 180
VYA+ + E+ G W + IA E +
Sbjct: 48 FVYAADVARTIREAARLGVD-AELDGVRWPDIVSRVFGRIDPIAAGGEEYRGRD------ 100
Query: 181 LINAGITLIEGRGKIVDPHTVDV-DGKLYSARHILISVGGRPFIPDIPGSEYAI--DSDA 237
I + G + + P T+ DG+ +A ++I+ G RP IP + SD
Sbjct: 101 --TPNIDVYRGHARFIGPKTLRTGDGEEITADQVVIAAGSRPVIPPVIADSGVRYHTSDT 158
Query: 238 ALDLPSKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRDFVAEQMS 297
+ LP PE + IVGGG+IA EFA +FS L V V R ++LR D+DI + E S
Sbjct: 159 IMRLPELPESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSGRLLRHLDDDISERFTELAS 218
Query: 298 LRGIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNTKNLGLEKVGVKM 357
R + + + ++++ + G+ ++ ATGR PN L GV +
Sbjct: 219 KR-WDVRLGRNVVGV-SQDGSGVTLRLDDGSTVEADVLLVATGRVPNGDLLDAAAAGVDV 276
Query: 358 TKNGAIEVDEYSGTAVPSIWAVGDVTDRINLTPVALMEGGALAKTLFQAEPTKP-DYSAV 416
++G + VDEY T+ ++A+GDV+ L VA E + L + D+ V
Sbjct: 277 DEDGRVVVDEYQRTSAEGVFALGDVSSPYQLKHVANHEARVVQHNLLHPDDLIASDHRFV 336
Query: 417 PSAVFSQPPIGQVGLSEEQAIQEYGDIDVFTANFRPLKATLSGLPDRIFMKLVLCAKTNK 476
P+AVF+ P I VGL+E +A DI V N+ + + F+KL+ T +
Sbjct: 337 PAAVFTHPQIASVGLTENEARAAGLDITVKVQNYGDVAYGWAMEDTTGFVKLIADRDTGR 396
Query: 477 VLGLHMCGEDAPEIVQGFAVAVKAGLTKADF 507
+LG H+ G A ++Q A+ GL +
Sbjct: 397 LLGAHIIGPQASTLIQPLIQAMSFGLDAREM 427
|
Length = 451 |
| >gnl|CDD|235660 PRK05976, PRK05976, dihydrolipoamide dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 229 bits (587), Expect = 4e-69
Identities = 141/470 (30%), Positives = 226/470 (48%), Gaps = 37/470 (7%)
Query: 73 FDLFTIGAGSGG-VRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLL 131
+DL IG G GG V A R A G A+ E G +GGTC+ +GC+P K L
Sbjct: 5 YDLVIIGGGPGGYVAAIR-AGQLGLKTALVE----------KGKLGGTCLHKGCIPSKAL 53
Query: 132 VYASKFSHEFDESNGFGWKYGTEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIEG 191
+++++ +++ FG P D++ + K+ + RLT +L I + G
Sbjct: 54 LHSAEVFQTAKKASPFGISVS-GPALDFAKVQERKDGIVDRLTKGVAALLKKGKIDVFHG 112
Query: 192 RGKIVDP-------HTVDVD-----GKLYSARHILISVGGRPF-IPDIP-GSEYAIDSDA 237
G+I+ P TV V+ ++ ++LI+ G RP +P +P EY I SD
Sbjct: 113 IGRILGPSIFSPMPGTVSVETETGENEMIIPENLLIATGSRPVELPGLPFDGEYVISSDE 172
Query: 238 ALDLPSKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRDFVAEQMS 297
AL L + P+ + IVGGG I LE+A + + EV V ++L D ++ VA +
Sbjct: 173 ALSLETLPKSLVIVGGGVIGLEWASMLADFGVEVTVVEAADRILPTEDAELSKEVARLLK 232
Query: 298 LRGIEFHTEESPQAI-LKSTDGSLSVKTNKGTVDGFS--HVMFATGRRPNTKNLGLEKVG 354
G+ T + LK G L V + G V+ + GRRPNT+ +GLE
Sbjct: 233 KLGVRVVTGAKVLGLTLKKDGGVLIVAEHNGEEKTLEADKVLVSVGRRPNTEGIGLENTD 292
Query: 355 VKMTKNGAIEVDEYSGTAVPSIWAVGDVTDRINLTPVALMEGGALAKTLFQAEPTKPDYS 414
+ + + G I++D++ T I+A+GDV L VA+ EG A+ + +P DY+
Sbjct: 293 IDV-EGGFIQIDDFCQTKERHIYAIGDVIGEPQLAHVAMAEGEMAAEHIAGKKPRPFDYA 351
Query: 415 AVPSAVFSQPPIGQVGLSEEQAIQEYGDIDVFTANFRPLKA---TLSGLPDRIFMKLVLC 471
A+P+ ++ P + VGL+EE+A + DV F P A L+ F+K+V
Sbjct: 352 AIPACCYTDPEVASVGLTEEEAKEA--GYDVKVGKF-PFAANGKALTYGESDGFVKVVAD 408
Query: 472 AKTNKVLGLHMCGEDAPEIVQGFAVAVKAGLTKADFDATVGVHPTAAEEF 521
T+ +LG+ G E++ FA+A++ G + T+ HPT +E
Sbjct: 409 RDTHDILGVQAVGPHVTELISEFALALELGARLWEVAGTIHPHPTLSEAI 458
|
Length = 472 |
| >gnl|CDD|235779 PRK06327, PRK06327, dihydrolipoamide dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 225 bits (575), Expect = 2e-67
Identities = 144/476 (30%), Positives = 233/476 (48%), Gaps = 48/476 (10%)
Query: 72 DFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKK-L 130
FD+ IGAG GG A+ AA G VA E + + + +GGTC+ GC+P K L
Sbjct: 4 QFDVVVIGAGPGGYVAAIRAAQLGLKVACIE---AWKNPKGKPALGGTCLNVGCIPSKAL 60
Query: 131 LVYASKF---SHEFDESNGFGWKYGTEPQHDWSTLIANKNAELQRLTG-----IYKNILI 182
L + +F H F + G + D + +IA K+ ++++TG KN
Sbjct: 61 LASSEEFENAGHHFAD---HGIHVD-GVKIDVAKMIARKDKVVKKMTGGIEGLFKKN--- 113
Query: 183 NAGITLIEGRGKIV----DPHTVDVDGK---LYSARHILISVGGRP-FIPDIPGSEYAI- 233
IT+++GRG V + + V G+ + +A+H++I+ G P +P +P I
Sbjct: 114 --KITVLKGRGSFVGKTDAGYEIKVTGEDETVITAKHVIIATGSEPRHLPGVPFDNKIIL 171
Query: 234 DSDAALDLPSKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRDFVA 293
D+ AL+ P+K+A++G G I LE ++ L +EV + L DE + A
Sbjct: 172 DNTGALNFTEVPKKLAVIGAGVIGLELGSVWRRLGAEVTILEALPAFLAAADEQVAKEAA 231
Query: 294 EQMSLRGIEFHTEESPQAILKSTDG-SLSVKTNKG-----TVDGFSHVMFATGRRPNTKN 347
+ + +G++ H I G S++ G VD ++ + GR PNT
Sbjct: 232 KAFTKQGLDIHLGVKIGEIKTGGKGVSVAYTDADGEAQTLEVD---KLIVSIGRVPNTDG 288
Query: 348 LGLEKVGVKMTKNGAIEVDEYSGTAVPSIWAVGDVTDRINLTPVALMEGGALAKTLFQAE 407
LGLE VG+K+ + G I VD++ T VP+++A+GDV L A EG A+A+ +
Sbjct: 289 LGLEAVGLKLDERGFIPVDDHCRTNVPNVYAIGDVVRGPMLAHKAEEEGVAVAE-RIAGQ 347
Query: 408 PTKPDYSAVPSAVFSQPPIGQVGLSEEQAIQEYGDIDV----FTANFRPLKATLSGLPDR 463
DY+ +P +++ P I VG +E+Q E + F AN R L G PD
Sbjct: 348 KGHIDYNTIPWVIYTSPEIAWVGKTEQQLKAEGVEYKAGKFPFMANGRALAM---GEPDG 404
Query: 464 IFMKLVLCAKTNKVLGLHMCGEDAPEIVQGFAVAVKAGLTKADFDATVGVHPTAAE 519
F+K++ AKT+++LG+H+ G +A E++ VA++ + D HPT +E
Sbjct: 405 -FVKIIADAKTDEILGVHVIGPNASELIAEAVVAMEFKASSEDIARICHAHPTLSE 459
|
Length = 475 |
| >gnl|CDD|132493 TIGR03452, mycothione_red, mycothione reductase | Back alignment and domain information |
|---|
Score = 217 bits (555), Expect = 8e-65
Identities = 143/459 (31%), Positives = 213/459 (46%), Gaps = 53/459 (11%)
Query: 72 DFDLFTIGAGSGG-VRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKL 130
+DL IG GSG + RFA +AI E G GGTC+ GC+P K+
Sbjct: 2 HYDLIIIGTGSGNSIPDPRFA---DKRIAIVE----------KGTFGGTCLNVGCIPTKM 48
Query: 131 LVYASKFSHEFDESNGFGWKYGTEPQH-DWSTLIANKNAELQRLTGI------YKNILIN 183
VYA++ + ES G E W +++ + R+ I Y+
Sbjct: 49 FVYAAEVAQSIGESARLG--IDAEIDSVRWPDIVSRVFGD--RIDPIAAGGEDYRRGDET 104
Query: 184 AGITLIEGRGKIVDPHTVDV-DGKLYSARHILISVGGRPFIPDI---PGSEYAIDSDAAL 239
I + +G + V P T+ DG+ + I+I+ G RP+IP G Y ++ +
Sbjct: 105 PNIDVYDGHARFVGPRTLRTGDGEEITGDQIVIAAGSRPYIPPAIADSGVRYHT-NEDIM 163
Query: 240 DLPSKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRDFVAEQMSLR 299
LP PE + IVGGGYIA EFA +FS L + V + R K+LR DEDI D E +
Sbjct: 164 RLPELPESLVIVGGGYIAAEFAHVFSALGTRVTIVNRSTKLLRHLDEDISDRFTEIAKKK 223
Query: 300 GIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNTKNLGLEKVGVKMTK 359
+ + A+ + DG +++ + G+ ++ ATGR PN L E GV++ +
Sbjct: 224 -WDIRLGRNVTAVEQDGDG-VTLTLDDGSTVTADVLLVATGRVPNGDLLDAEAAGVEVDE 281
Query: 360 NGAIEVDEYSGTAVPSIWAVGDVTDRINLTPVALMEGGALAKTLFQAEPTKP-DYSAVPS 418
+G I+VDEY T+ +WA+GDV+ L VA E + L + + VPS
Sbjct: 282 DGRIKVDEYGRTSARGVWALGDVSSPYQLKHVANAEARVVKHNLLHPNDLRKMPHDFVPS 341
Query: 419 AVFSQPPIGQVGLSEEQA----------IQEYGDIDVFTANFRPLKATLSGLPDRIFMKL 468
AVF+ P I VGL+E++A IQ YGD+ A ++ T F KL
Sbjct: 342 AVFTHPQIATVGLTEQEAREAGHDITVKIQNYGDVAYGWA----MEDTTG------FCKL 391
Query: 469 VLCAKTNKVLGLHMCGEDAPEIVQGFAVAVKAGLTKADF 507
+ T K+LG H+ G A ++Q A+ GL +
Sbjct: 392 IADRDTGKLLGAHIIGPQASSLIQPLITAMAFGLDAREM 430
|
Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate. Length = 452 |
| >gnl|CDD|219686 pfam07992, Pyr_redox_2, Pyridine nucleotide-disulphide oxidoreductase | Back alignment and domain information |
|---|
Score = 209 bits (535), Expect = 8e-64
Identities = 93/317 (29%), Positives = 140/317 (44%), Gaps = 43/317 (13%)
Query: 74 DLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVY 133
D+ IG G G+ A+ A G VA+ E GGTC RGC+PKKLL+
Sbjct: 1 DVVIIGGGPAGLAAAIRLARLGLKVALIE------------REGGTCYNRGCLPKKLLLE 48
Query: 134 ASKFSHEFDESNGFGWKYGTEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIEGRG 193
++ + E+ + + +L + + G
Sbjct: 49 VAEGLELA--------------------IGLALPEEVYK-EFGVEVLLGTEVVDIDRGEK 87
Query: 194 KIVDPHTVDVDGKLYSARHILISVGGRPFIPDIPGSEYA-----IDSDAALDLPSKPEKI 248
+V G+ + ++I+ G RP IP IPG E A IDSD L+L P+++
Sbjct: 88 TVVL--KDVETGREITYDKLIIATGARPRIPGIPGVEVATLRGVIDSDEILELLELPKRV 145
Query: 249 AIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRDFVAEQMSLRGIEFHTEES 308
+VGGGYI LE A + L EV V R+ ++L D++I + E++ +
Sbjct: 146 VVVGGGYIGLELAAALAKLGKEVTVVERRDRLLARADDEISAALLEKLEKLLLGVTVLLV 205
Query: 309 -PQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNTKNLGLEKVGVKMTKNGAIEVDE 367
+ + VK G V+ A GRRPNT+ LE+ GV++ + G I VDE
Sbjct: 206 VVVVVKVGDGKVVEVKLGDGEELDADVVLVAIGRRPNTE--LLEQAGVELDERGYIVVDE 263
Query: 368 YSGTAVPSIWAVGDVTD 384
Y T+VP I+A GDV +
Sbjct: 264 YLRTSVPGIYAAGDVAE 280
|
This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain. Length = 283 |
| >gnl|CDD|180907 PRK07251, PRK07251, pyridine nucleotide-disulfide oxidoreductase; Provisional | Back alignment and domain information |
|---|
Score = 206 bits (527), Expect = 8e-61
Identities = 135/464 (29%), Positives = 219/464 (47%), Gaps = 50/464 (10%)
Query: 73 FDLFTIGAGSGG-VRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLL 131
+DL IG G G A++ A+ G VA+ E E+ GGTC+ GC+P K L
Sbjct: 4 YDLIVIGFGKAGKTLAAKLAS-AGKKVALVE--------ESKAMYGGTCINIGCIPTKTL 54
Query: 132 VYASKFSHEFDESNGFGWKYGTEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIEG 191
+ A++ + F++ +A KN RL G +L +G+ L +
Sbjct: 55 LVAAEKNLSFEQV------------------MATKNTVTSRLRGKNYAMLAGSGVDLYDA 96
Query: 192 RGKIVDPHTVDV----DGKLYSARHILISVGGRPFIPDIPG---SEYAIDSDAALDLPSK 244
V ++V + +A I+I+ G + IPG S++ DS L +
Sbjct: 97 EAHFVSNKVIEVQAGDEKIELTAETIVINTGAVSNVLPIPGLADSKHVYDSTGIQSLETL 156
Query: 245 PEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRDFVAEQMSLRGIEFH 304
PE++ I+GGG I LEFAG+++ L S+V V +L + + + M GI F
Sbjct: 157 PERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAASTILPREEPSVAALAKQYMEEDGITFL 216
Query: 305 TEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNTKNLGLEKVGVKMTKNGAIE 364
+ K+ + V T T F +++ATGR+PNT+ LGLE +++T+ GAI+
Sbjct: 217 LNAHTTEV-KNDGDQVLVVTEDETY-RFDALLYATGRKPNTEPLGLENTDIELTERGAIK 274
Query: 365 VDEYSGTAVPSIWAVGDVTDRINLTPVALMEG----GALAKTLFQAEPTKPDYSAVPSAV 420
VD+Y T+VP ++AVGDV T ++L + G L T D VP+ +
Sbjct: 275 VDDYCQTSVPGVFAVGDVNGGPQFTYISLDDFRIVFGYLTGD---GSYTLEDRGNVPTTM 331
Query: 421 FSQPPIGQVGLSEEQAIQEYGDI---DVFTANFRPLKATLSGLPDRIFMKLVLCAKTNKV 477
F PP+ QVGL+E++A + ++ A P +A ++ F K+V+ +T ++
Sbjct: 332 FITPPLSQVGLTEKEAKEAGLPYAVKELLVAAM-P-RAHVNNDLRGAF-KVVVNTETKEI 388
Query: 478 LGLHMCGEDAPEIVQGFAVAVKAGLTKADFDATVGVHPTAAEEF 521
LG + GE + EI+ +A+ + F + HPT AE
Sbjct: 389 LGATLFGEGSQEIINLITMAMDNKIPYTYFKKQIFTHPTMAENL 432
|
Length = 438 |
| >gnl|CDD|180579 PRK06467, PRK06467, dihydrolipoamide dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Score = 201 bits (514), Expect = 1e-58
Identities = 124/468 (26%), Positives = 217/468 (46%), Gaps = 44/468 (9%)
Query: 73 FDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLV 132
+ +GAG G A+ AA+ G E +ST+ GG C+ GC+P K L+
Sbjct: 5 TQVVVLGAGPAGYSAAFRAADLGLETVCVE-RYSTL--------GGVCLNVGCIPSKALL 55
Query: 133 YASKFSHEFDESNGFGWKYGTEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIEGR 192
+ +K E G +G EP+ D + A K +++LTG + +T++ G
Sbjct: 56 HVAKVIEEAKALAEHGIVFG-EPKIDIDKMRARKEKVVKQLTGGLAGMAKGRKVTVVNGL 114
Query: 193 GKIVDPHTVDVDGK-----LYSARHILISVGGRPF-IPDIP-GSEYAIDSDAALDLPSKP 245
GK +T++V G+ + + +I+ G RP +P IP DS AL+L P
Sbjct: 115 GKFTGGNTLEVTGEDGKTTVIEFDNAIIAAGSRPIQLPFIPHDDPRIWDSTDALELKEVP 174
Query: 246 EKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDI-RDF---VAEQMSLR-- 299
+++ ++GGG I LE ++ L SEV V +V+ D+DI + F + +Q ++
Sbjct: 175 KRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQVIPAADKDIVKVFTKRIKKQFNIMLE 234
Query: 300 ----GIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNTKNLGLEKVGV 355
+E + + + + + V+ A GR PN K L EK GV
Sbjct: 235 TKVTAVEAKED---GIYVTMEGKKAPAEPQR-----YDAVLVAVGRVPNGKLLDAEKAGV 286
Query: 356 KMTKNGAIEVDEYSGTAVPSIWAVGDVTDRINLTPVALMEGGALAKTLFQAEPTKPDYSA 415
++ + G I VD+ T VP I+A+GD+ + L + G +A + + D
Sbjct: 287 EVDERGFIRVDKQCRTNVPHIFAIGDIVGQPMLAHKG-VHEGHVAAEVIAGKKHYFDPKV 345
Query: 416 VPSAVFSQPPIGQVGLSEEQAIQEYGDIDV----FTANFRPLKATLSGLPDRIFMKLVLC 471
+PS +++P + VGL+E++A +E + + + A+ R + + + KL+
Sbjct: 346 IPSIAYTEPEVAWVGLTEKEAKEEGIEYETATFPWAASGRAIASDCADG----MTKLIFD 401
Query: 472 AKTNKVLGLHMCGEDAPEIVQGFAVAVKAGLTKADFDATVGVHPTAAE 519
+T++VLG + G +A E++ +A++ G D T+ HPT E
Sbjct: 402 KETHRVLGGAIVGTNAGELLGEIGLAIEMGCDAEDIALTIHAHPTLHE 449
|
Length = 471 |
| >gnl|CDD|180743 PRK06912, acoL, dihydrolipoamide dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 195 bits (498), Expect = 2e-56
Identities = 137/464 (29%), Positives = 220/464 (47%), Gaps = 43/464 (9%)
Query: 75 LFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYA 134
L IG G G A+ AA G +V + + +GGTC+ GC+P K L+ +
Sbjct: 3 LVVIGGGPAGYVAAITAAQNGKNVTLID----------EADLGGTCLNEGCMPTKSLLES 52
Query: 135 SKFSHEFDESNGFGWKY-GTEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIEGRG 193
++ + ++N FG DW + A K+ + +L + ++ I +I+G+
Sbjct: 53 AEVHDKVKKANHFGITLPNGSISIDWKQMQARKSQIVTQLVQGIQYLMKKNKIKVIQGKA 112
Query: 194 KIVDPHTVDVDG----KLYSARHILISVGGRPF-IPDIP-GSEYAIDSDAALDLPSKPEK 247
H V V+ ++ A +I+ G P +P P ++ I+S A+ LPS P
Sbjct: 113 SFETDHRVRVEYGDKEEVVDAEQFIIAAGSEPTELPFAPFDGKWIINSKHAMSLPSIPSS 172
Query: 248 IAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRDFVAEQMSLRGIEFHT-- 305
+ IVGGG I EFA I+S L ++V + ++L G DEDI + E++ G++ T
Sbjct: 173 LLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQLLPGEDEDIAHILREKLENDGVKIFTGA 232
Query: 306 ------EESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNTKNLGLEKVGVKMTK 359
QA+ + V V+ + GR+P + L LEK GV+ +
Sbjct: 233 ALKGLNSYKKQALFEYEGSIQEVNAE--------FVLVSVGRKPRVQQLNLEKAGVQFSN 284
Query: 360 NGAIEVDEYSGTAVPSIWAVGDVTDRINLTPVALMEGGALAKTLFQAEPTKPDYSAVPSA 419
G I V+E+ T VP I+A GDV I L VA EG A E K +Y AVP
Sbjct: 285 KG-ISVNEHMQTNVPHIYACGDVIGGIQLAHVAFHEGTTAALHA-SGEDVKVNYHAVPRC 342
Query: 420 VFSQPPIGQVGLSEEQAIQEYGDIDV----FTANFRPLKATLSGLPDRIFMKLVLCAKTN 475
+++ P I VGL+E+QA ++YGDI + FTAN KA + G +K+++ K
Sbjct: 343 IYTSPEIASVGLTEKQAREQYGDIRIGEFPFTANG---KALIIGEQTGK-VKVIVEPKYQ 398
Query: 476 KVLGLHMCGEDAPEIVQGFAVAVKAGLTKADFDATVGVHPTAAE 519
+++G+ + G A E++ V + +T + + HPT +E
Sbjct: 399 EIVGISIIGPRATELIGQGTVMIHTEVTADIMEDFIAAHPTLSE 442
|
Length = 458 |
| >gnl|CDD|235373 PRK05249, PRK05249, soluble pyridine nucleotide transhydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 191 bits (489), Expect = 5e-55
Identities = 128/436 (29%), Positives = 207/436 (47%), Gaps = 29/436 (6%)
Query: 68 PSHYDFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVP 127
YD+DL IG+G G A+ AA G VA+ E VGG C G +P
Sbjct: 1 MHMYDYDLVVIGSGPAGEGAAMQAAKLGKRVAVIE---------RYRNVGGGCTHTGTIP 51
Query: 128 KKLLVYASKFSHEFDESNGFGWKYGTEPQHDWSTLIANKNAELQRLTGIYKNILINAGIT 187
K L A F++ N Y + + ++ L+A + + + + + +
Sbjct: 52 SKALREAVLRLIGFNQ-NPLYSSYRVKLRITFADLLARADHVINKQVEVRRGQYERNRVD 110
Query: 188 LIEGRGKIVDPHTVDV---DGK--LYSARHILISVGGRPF-IPDIPGSEYAI-DSDAALD 240
LI+GR + VDPHTV+V DG+ +A I+I+ G RP+ PD+ I DSD+ L
Sbjct: 111 LIQGRARFVDPHTVEVECPDGEVETLTADKIVIATGSRPYRPPDVDFDHPRIYDSDSILS 170
Query: 241 LPSKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRDFVAEQMSLRG 300
L P + I G G I E+A IF+ L +V + + ++L D++I D ++ + G
Sbjct: 171 LDHLPRSLIIYGAGVIGCEYASIFAALGVKVTLINTRDRLLSFLDDEISDALSYHLRDSG 230
Query: 301 IEFHTEESPQAILKSTDGSL----SVKTNKGTVDGFSHVMFATGRRPNTKNLGLEKVGVK 356
+ E + + DG + S K K +++A GR NT L LE G++
Sbjct: 231 VTIRHNEEVEKVEGGDDGVIVHLKSGKKIKADC-----LLYANGRTGNTDGLNLENAGLE 285
Query: 357 MTKNGAIEVDEYSGTAVPSIWAVGDVTDRINLTPVALMEGGALAKTLFQAEPTKPDYSAV 416
G ++V+E TAVP I+AVGDV +L + M+ G +A E T +
Sbjct: 286 ADSRGQLKVNENYQTAVPHIYAVGDVIGFPSLASAS-MDQGRIAAQHAVGEATAHLIEDI 344
Query: 417 PSAVFSQPPIGQVGLSEEQAIQEYGDIDVFTANFRPL-KATLSGLPDRIFMKLVLCAKTN 475
P+ +++ P I VG +E++ +V A F+ L +A ++G +K++ +T
Sbjct: 345 PTGIYTIPEISSVGKTEQELTAAKVPYEVGRARFKELARAQIAGDNVG-MLKILFHRETL 403
Query: 476 KVLGLHMCGEDAPEIV 491
++LG+H GE A EI+
Sbjct: 404 EILGVHCFGERATEII 419
|
Length = 461 |
| >gnl|CDD|237790 PRK14694, PRK14694, putative mercuric reductase; Provisional | Back alignment and domain information |
|---|
Score = 192 bits (488), Expect = 5e-55
Identities = 139/436 (31%), Positives = 213/436 (48%), Gaps = 26/436 (5%)
Query: 78 IGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKF 137
IG+G + A+ A GA V + E G +GGTCV GCVP K+++ A+
Sbjct: 12 IGSGGSAMAAALKATERGARVTLIE----------RGTIGGTCVNIGCVPSKIMIRAAHI 61
Query: 138 SHEFDESNGFGWKYGTEPQHDWSTLIANKNAELQRL-TGIYKNILI-NAGITLIEGRGKI 195
+H ES P D S L+A + A ++ L Y++IL NA IT++ G +
Sbjct: 62 AHLRRESPFDDGLSAQAPVVDRSALLAQQQARVEELRESKYQSILRENAAITVLNGEARF 121
Query: 196 VDPHTVDV---DGKLYSAR--HILISVGGRPFIPDIPG---SEYAIDSDAALDLPSKPEK 247
VD T+ V DG + I G RP P +PG + Y + S +AL+L PE+
Sbjct: 122 VDERTLTVTLNDGGEQTVHFDRAFIGTGARPAEPPVPGLAETPY-LTSTSALELDHIPER 180
Query: 248 IAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRDFVAEQMSLRGIEFHTEE 307
+ ++G +ALE A F+ L S V V R + VL D + + + GIE +
Sbjct: 181 LLVIGASVVALELAQAFARLGSRVTVLARSR-VLSQEDPAVGEAIEAAFRREGIEVLKQT 239
Query: 308 SPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNTKNLGLEKVGVKMTKNGAIEVDE 367
+ ++TN GT+ ++ ATGR PNT+NL LE +GV+ T+ GAI +DE
Sbjct: 240 QASEV-DYNGREFILETNAGTLRA-EQLLVATGRTPNTENLNLESIGVE-TERGAIRIDE 296
Query: 368 YSGTAVPSIWAVGDVTDRINLTPVALMEGGALAKTLFQAEPTKPDYSAVPSAVFSQPPIG 427
+ T V I+A GD TD+ VA GG+ A D SA+P +F+ P +
Sbjct: 297 HLQTTVSGIYAAGDCTDQPQFVYVA-AAGGSRAAINMTGGDASLDLSAMPEVIFTDPQVA 355
Query: 428 QVGLSEEQAIQEYGDIDVFTANFRPLKATLSGLPDRIFMKLVLCAKTNKVLGLHMCGEDA 487
VGLSE +A + D D T + + L F+K+V + ++LG+ + +A
Sbjct: 356 TVGLSEAEAQAQGYDTDSRTLDLENVPRALVNFDTGGFIKMVAERGSGRLLGVQVVAGEA 415
Query: 488 PEIVQGFAVAVKAGLT 503
E++Q +A++A +T
Sbjct: 416 GELIQTAVMALRARMT 431
|
Length = 468 |
| >gnl|CDD|236106 PRK07818, PRK07818, dihydrolipoamide dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Score = 189 bits (483), Expect = 3e-54
Identities = 150/478 (31%), Positives = 223/478 (46%), Gaps = 57/478 (11%)
Query: 69 SHYDFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPK 128
+HYD + +GAG GG A+ AA G A+ E + GG C+ GC+P
Sbjct: 3 THYD--VVVLGAGPGGYVAAIRAAQLGLKTAVVEKKYW----------GGVCLNVGCIPS 50
Query: 129 KLLVYASKFSHEFD-ESNGFG------WKYGTEPQHDWSTLIANKNAELQRLTGIY---- 177
K L+ ++ +H F E+ FG + YG D S +A R+ G++
Sbjct: 51 KALLRNAELAHIFTKEAKTFGISGEVTFDYG--AAFDRSRKVAEG-----RVKGVHFLMK 103
Query: 178 KNILINAGITLIEGRGKIVDPHTVDVD-----GKLYSARHILISVGGRP-FIPDIPGSEY 231
KN IT I G G D +T++VD + + + +I+ G +P SE
Sbjct: 104 KN-----KITEIHGYGTFTDANTLEVDLNDGGTETVTFDNAIIATGSSTRLLPGTSLSEN 158
Query: 232 AIDSDAALDLPSKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRDF 291
+ + + P+ I I G G I +EFA + +V + + L D ++
Sbjct: 159 VVTYEEQILSRELPKSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDRALPNEDAEVSKE 218
Query: 292 VAEQMSLRGIEFHTEESPQAILKSTDG---SLSVKTNKGTVDGFSHVMFATGRRPNTKNL 348
+A+Q G++ T ++I + ++S K K V+ A G P +
Sbjct: 219 IAKQYKKLGVKILTGTKVESIDDNGSKVTVTVSKKDGKAQELEADKVLQAIGFAPRVEGY 278
Query: 349 GLEKVGVKMTKNGAIEVDEYSGTAVPSIWAVGDVTDRINLTPVALMEGGALAKTLFQAEP 408
GLEK GV +T GAI +D+Y T VP I+A+GDVT ++ L VA +G A+T+ AE
Sbjct: 279 GLEKTGVALTDRGAIAIDDYMRTNVPHIYAIGDVTAKLQLAHVAEAQGVVAAETIAGAE- 337
Query: 409 TKP--DYSAVPSAVFSQPPIGQVGLSEEQAIQEYGDIDV----FTANFRPLKATLSGLPD 462
T DY +P A F QP + GL+EEQA +E D+ V FTAN KA GL D
Sbjct: 338 TLELGDYRMMPRATFCQPQVASFGLTEEQAREEGYDVKVAKFPFTANG---KA--HGLGD 392
Query: 463 RI-FMKLVLCAKTNKVLGLHMCGEDAPEIVQGFAVAVKAGLTKADFDATVGVHPTAAE 519
F+KLV AK ++LG H+ G D E++ +A K LT + V HPT +E
Sbjct: 393 PTGFVKLVADAKYGELLGGHLIGPDVSELLPELTLAQKWDLTAEELARNVHTHPTLSE 450
|
Length = 466 |
| >gnl|CDD|184298 PRK13748, PRK13748, putative mercuric reductase; Provisional | Back alignment and domain information |
|---|
Score = 185 bits (472), Expect = 7e-52
Identities = 139/438 (31%), Positives = 213/438 (48%), Gaps = 29/438 (6%)
Query: 78 IGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKF 137
IG+G + A+ A GA V + E G +GGTCV GCVP K+++ A+
Sbjct: 104 IGSGGAAMAAALKAVEQGARVTLIE----------RGTIGGTCVNVGCVPSKIMIRAAHI 153
Query: 138 SHEFDESNGFGWKYGTEPQHDWSTLIANKNAELQRLT-GIYKNIL-INAGITLIEGRGKI 195
+H ES G T P D S L+A + A + L Y+ IL N IT++ G +
Sbjct: 154 AHLRRESPFDGGIAATVPTIDRSRLLAQQQARVDELRHAKYEGILDGNPAITVLHGEARF 213
Query: 196 VDPHTVDV---DG--KLYSARHILISVGGRPFIPDIPG---SEYAIDSDAALDLPSKPEK 247
D T+ V DG ++ + LI+ G P +P IPG + Y S AL + PE+
Sbjct: 214 KDDQTLIVRLNDGGERVVAFDRCLIATGASPAVPPIPGLKETPYWT-STEALVSDTIPER 272
Query: 248 IAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRDFVAEQMSLRGIEF--HT 305
+A++G +ALE A F+ L S+V + R R D I + V GIE HT
Sbjct: 273 LAVIGSSVVALELAQAFARLGSKVTILARSTLFFRE-DPAIGEAVTAAFRAEGIEVLEHT 331
Query: 306 EESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNTKNLGLEKVGVKMTKNGAIEV 365
+ S A DG + T G + ++ ATGR PNT++L L+ GV + GAI +
Sbjct: 332 QASQVA---HVDGEFVLTTGHGELRA-DKLLVATGRAPNTRSLALDAAGVTVNAQGAIVI 387
Query: 366 DEYSGTAVPSIWAVGDVTDRINLTPVALMEGGALAKTLFQAEPTKPDYSAVPSAVFSQPP 425
D+ T+VP I+A GD TD+ VA G A + + D +A+P+ VF+ P
Sbjct: 388 DQGMRTSVPHIYAAGDCTDQPQFVYVAAAAGTRAAINMTGGD-AALDLTAMPAVVFTDPQ 446
Query: 426 IGQVGLSEEQAIQEYGDIDVFTANFRPLKATLSGLPDRIFMKLVLCAKTNKVLGLHMCGE 485
+ VG SE +A + + D T + L+ R F+KLV+ + +++G+
Sbjct: 447 VATVGYSEAEAHHDGIETDSRTLTLDNVPRALANFDTRGFIKLVIEEGSGRLIGVQAVAP 506
Query: 486 DAPEIVQGFAVAVKAGLT 503
+A E++Q A+A++ +T
Sbjct: 507 EAGELIQTAALAIRNRMT 524
|
Length = 561 |
| >gnl|CDD|237806 PRK14727, PRK14727, putative mercuric reductase; Provisional | Back alignment and domain information |
|---|
Score = 178 bits (452), Expect = 9e-50
Identities = 128/440 (29%), Positives = 201/440 (45%), Gaps = 33/440 (7%)
Query: 78 IGAGSGGVRASRFAANFGASVAICELPFSTISSETTGG--VGGTCVLRGCVPKKLLVYAS 135
IG+GS A+ AA GA V I E G +GG CV GCVP K+L+ A+
Sbjct: 22 IGSGSAAFAAAIKAAEHGARVTIIE-----------GADVIGGCCVNVGCVPSKILIRAA 70
Query: 136 KFSHEFDESNGFGWKYGTEPQHDWSTLIANKNAELQRL-TGIYKNILI-NAGITLIEGRG 193
+ +H+ SN F P D L+ + A ++ L Y++IL N +TL++G
Sbjct: 71 QLAHQ-QRSNPFDGVEAVAPSIDRGLLLHQQQARVEELRHAKYQSILDGNPALTLLKGYA 129
Query: 194 KIVDPHTVDV---DG--KLYSARHILISVGGRPFIPDIPG---SEYAIDSDAALDLPSKP 245
+ D +T+ V DG ++ +A LI+ G P IP IPG + Y S AL P
Sbjct: 130 RFKDGNTLVVRLHDGGERVLAADRCLIATGSTPTIPPIPGLMDTPYWT-STEALFSDELP 188
Query: 246 EKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRDFVAEQMSLRGIEF-- 303
+ ++G +A E A ++ L S V + R + R D + + + GIE
Sbjct: 189 ASLTVIGSSVVAAEIAQAYARLGSRVTILARSTLLFRE-DPLLGETLTACFEKEGIEVLN 247
Query: 304 HTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNTKNLGLEKVGVKMTKNGAI 363
+T+ S +++ D + T G + ++ +TGR NT +L LE VGV +GAI
Sbjct: 248 NTQAS---LVEHDDNGFVLTTGHGELRA-EKLLISTGRHANTHDLNLEAVGVTTDTSGAI 303
Query: 364 EVDEYSGTAVPSIWAVGDVTDRINLTPVALMEGGALAKTLFQAEPTKPDYSAVPSAVFSQ 423
V+ T+ P I+A GD +D VA G + D SA+P+ +F+
Sbjct: 304 VVNPAMETSAPDIYAAGDCSDLPQFVYVAAAAGSRAGINMTGGN-ATLDLSAMPAVIFTD 362
Query: 424 PPIGQVGLSEEQAIQEYGDIDVFTANFRPLKATLSGLPDRIFMKLVLCAKTNKVLGLHMC 483
P + VGLSE +A + + L+ F+KLV T K++G +
Sbjct: 363 PQVATVGLSEAKAHLSGIETISRVLTMENVPRALANFETDGFIKLVAEEGTRKLIGAQIL 422
Query: 484 GEDAPEIVQGFAVAVKAGLT 503
+ E++Q A+A+ +T
Sbjct: 423 AHEGGELIQSAALAIHNRMT 442
|
Length = 479 |
| >gnl|CDD|181196 PRK08010, PRK08010, pyridine nucleotide-disulfide oxidoreductase; Provisional | Back alignment and domain information |
|---|
Score = 168 bits (427), Expect = 1e-46
Identities = 123/453 (27%), Positives = 207/453 (45%), Gaps = 41/453 (9%)
Query: 78 IGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKF 137
IG G G + A G VA+ E ++ GGTC+ GC+P K LV+ +
Sbjct: 9 IGFGKAGKTLAVTLAKAGWRVALIE--------QSNAMYGGTCINIGCIPTKTLVHDA-- 58
Query: 138 SHEFDESNGFGWKYGTEPQHDWSTLIANKNAELQRLTGI-YKNILINAGITLIEGRGKIV 196
+ D+ I KN + L + N+ I +I+G+ + +
Sbjct: 59 ----------------QQHTDFVRAIQRKNEVVNFLRNKNFHNLADMPNIDVIDGQAEFI 102
Query: 197 DPHTVDV---DGKL-YSARHILISVGGRPFIPDIPG---SEYAIDSDAALDLPSKPEKIA 249
+ H++ V +G L I I+ G + +P IPG + DS L+L P +
Sbjct: 103 NNHSLRVHRPEGNLEIHGEKIFINTGAQTVVPPIPGITTTPGVYDSTGLLNLKELPGHLG 162
Query: 250 IVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRDFVAEQMSLRGIEFHTEESP 309
I+GGGYI +EFA +F+ S+V + L D DI D +A + +G++
Sbjct: 163 ILGGGYIGVEFASMFANFGSKVTILEAASLFLPREDRDIADNIATILRDQGVDIILNAHV 222
Query: 310 QAILKSTDGSLSVKTNKGT--VDGFSHVMFATGRRPNTKNLGLEKVGVKMTKNGAIEVDE 367
+ I + + V + VD ++ A+GR+P T +L E G+ + + GAI VD+
Sbjct: 223 ERI-SHHENQVQVHSEHAQLAVDA---LLIASGRQPATASLHPENAGIAVNERGAIVVDK 278
Query: 368 YSGTAVPSIWAVGDVTDRINLTPVALMEGGALAKTLF-QAEPTKPDYSAVPSAVFSQPPI 426
Y T +IWA+GDVT + T ++L + + L + + + D VP +VF PP+
Sbjct: 279 YLHTTADNIWAMGDVTGGLQFTYISLDDYRIVRDELLGEGKRSTDDRKNVPYSVFMTPPL 338
Query: 427 GQVGLSEEQAIQEYGDIDVFTANFRPLKATLSGLPDRIFMKLVLCAKTNKVLGLHMCGED 486
+VG++EEQA + DI V T + R +K ++ KT ++LG + D
Sbjct: 339 SRVGMTEEQARESGADIQVVTLPVAAIPRARVMNDTRGVLKAIVDNKTQRILGASLLCVD 398
Query: 487 APEIVQGFAVAVKAGLTKADFDATVGVHPTAAE 519
+ E++ + + AGL + + HP+ +E
Sbjct: 399 SHEMINIVKMVMDAGLPYSILRDQIFTHPSMSE 431
|
Length = 441 |
| >gnl|CDD|236112 PRK07845, PRK07845, flavoprotein disulfide reductase; Reviewed | Back alignment and domain information |
|---|
Score = 168 bits (427), Expect = 3e-46
Identities = 150/464 (32%), Positives = 223/464 (48%), Gaps = 50/464 (10%)
Query: 78 IGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKF 137
IG G GG A+ AA GA V + E G+GG VL CVP K L+ ++
Sbjct: 7 IGGGPGGYEAALVAAQLGADVTVIE----------RDGLGGAAVLTDCVPSKTLIATAEV 56
Query: 138 SHEFDESNGFGWKYGTEPQHDWSTLIANKNAELQRLT----GIYKNILINAGITLIEGRG 193
E + G ++ + + + NA ++ L + L G+ +I GRG
Sbjct: 57 RTELRRAAELGIRFIDDGEARVD--LPAVNARVKALAAAQSADIRARLEREGVRVIAGRG 114
Query: 194 KIVD----PHTVDV---DGKLYS--ARHILISVGGRPFIPDIPGSEYAIDSDAAL----- 239
+++D PH V V DG + A +LI+ G P I +P +E D + L
Sbjct: 115 RLIDPGLGPHRVKVTTADGGEETLDADVVLIATGASPRI--LPTAE--PDGERILTWRQL 170
Query: 240 -DLPSKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRDFVAEQMSL 298
DL PE + +VG G EFA ++ L +V + + +VL G D D + + E +
Sbjct: 171 YDLDELPEHLIVVGSGVTGAEFASAYTELGVKVTLVSSRDRVLPGEDADAAEVLEEVFAR 230
Query: 299 RGIEFHTEESPQAILKSTDGSLSVKTNKG-TVDGFSHVMFATGRRPNTKNLGLEKVGVKM 357
RG+ +++ ++ DG + V G TV+G SH + A G PNT LGLE+ GV++
Sbjct: 231 RGMTVLKRSRAESVERTGDGVV-VTLTDGRTVEG-SHALMAVGSVPNTAGLGLEEAGVEL 288
Query: 358 TKNGAIEVDEYSGTAVPSIWAVGDVTDRINLTPVALMEGG-ALAKTLFQA-EPTKPDYSA 415
T +G I VD S T+VP I+A GD T + L VA M+G A+ L +A P +
Sbjct: 289 TPSGHITVDRVSRTSVPGIYAAGDCTGVLPLASVAAMQGRIAMYHALGEAVSPLRL--KT 346
Query: 416 VPSAVFSQPPIGQVGLSEEQAIQEYGDIDVFTANFRPL----KATLSGLPDRIFMKLVLC 471
V S VF++P I VG+S + AI G++ T PL +A +SGL D F+KL
Sbjct: 347 VASNVFTRPEIATVGVS-QAAIDS-GEVPARTVML-PLATNPRAKMSGLRDG-FVKLFCR 402
Query: 472 AKTNKVLGLHMCGEDAPEIVQGFAVAVKAGLTKADFDATVGVHP 515
T V+G + A E++ A+AV+ LT D T V+P
Sbjct: 403 PGTGVVIGGVVVAPRASELILPIALAVQNRLTVDDLAQTFTVYP 446
|
Length = 466 |
| >gnl|CDD|180409 PRK06115, PRK06115, dihydrolipoamide dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Score = 162 bits (412), Expect = 3e-44
Identities = 134/465 (28%), Positives = 222/465 (47%), Gaps = 36/465 (7%)
Query: 73 FDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLV 132
+D+ IG G GG A+ A G VA E +GGTC+ GC+P K L+
Sbjct: 4 YDVVIIGGGPGGYNAAIRAGQLGLKVACVE---------GRSTLGGTCLNVGCMPSKALL 54
Query: 133 YASKFSHEFDESNGFGWKYGTE--PQHDWSTLIANKNAELQRLTGIYKNILINAGITLIE 190
+AS+ +E F G E P + + ++ K+ ++ LT + + + I+
Sbjct: 55 HASEL-YEAASGGEFA-HLGIEVKPTLNLAQMMKQKDESVEALTKGVEFLFRKNKVDWIK 112
Query: 191 GRGKIVDPHTVDV---DG--KLYSARHILISVGGRPF-IPDIP-GSEYAIDSDAALDLPS 243
G G++ V V DG A+ I+I+ G P +P + ++ IDS AL LP
Sbjct: 113 GWGRLDGVGKVVVKAEDGSETQLEAKDIVIATGSEPTPLPGVTIDNQRIIDSTGALSLPE 172
Query: 244 KPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRDFVAEQMSLRGIEF 303
P+ + ++G G I LE ++ L ++V V ++ G D + + + ++ +G++F
Sbjct: 173 VPKHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLDRICPGTDTETAKTLQKALTKQGMKF 232
Query: 304 HTEESPQAILKSTDG-SLSVKTNKG----TVDGFSHVMFATGRRPNTKNLGLEKVGVKMT 358
DG SL+++ G T+ +V+ A GRRP T+ LGLE VG++
Sbjct: 233 KLGSKVTGATAGADGVSLTLEPAAGGAAETLQA-DYVLVAIGRRPYTQGLGLETVGLETD 291
Query: 359 KNGAIEVDEYSGTAVPSIWAVGDVTDRINLTPVALMEGGALAKTLFQAEPTKPDYSAVPS 418
K G + D + T+VP +W +GDVT L A E A + + + +Y +P
Sbjct: 292 KRGMLANDHHR-TSVPGVWVIGDVTSGPMLAHKAEDEAVACIE-RIAGKAGEVNYGLIPG 349
Query: 419 AVFSQPPIGQVGLSEEQAIQEYGDIDV----FTANFRPLKATLSGLPDRIFMKLVLCAKT 474
++++P + VG +EEQ E V FTAN R A ++ + F K++ A+T
Sbjct: 350 VIYTRPEVATVGKTEEQLKAEGRAYKVGKFPFTANSR---AKINHETEG-FAKILADART 405
Query: 475 NKVLGLHMCGEDAPEIVQGFAVAVKAGLTKADFDATVGVHPTAAE 519
++VLG+HM G E++ F VA++ + D T HPT +E
Sbjct: 406 DEVLGVHMVGPSVSEMIGEFCVAMEFSASAEDIALTCHPHPTRSE 450
|
Length = 466 |
| >gnl|CDD|217252 pfam02852, Pyr_redox_dim, Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain | Back alignment and domain information |
|---|
Score = 142 bits (361), Expect = 7e-41
Identities = 42/110 (38%), Positives = 64/110 (58%)
Query: 416 VPSAVFSQPPIGQVGLSEEQAIQEYGDIDVFTANFRPLKATLSGLPDRIFMKLVLCAKTN 475
VPS VF+ P I VGL+EE+A ++ G++ V F+ L+ + F+KLV A+T
Sbjct: 1 VPSVVFTDPEIASVGLTEEEAKKKGGEVKVGKFPFKANGRALAYGETKGFVKLVADAETG 60
Query: 476 KVLGLHMCGEDAPEIVQGFAVAVKAGLTKADFDATVGVHPTAAEEFVTLR 525
++LG H+ G +A E++Q A+A+K G T D T+ HPT +E V
Sbjct: 61 RILGAHIVGPNAGELIQEAALAIKMGATVEDLANTIHAHPTLSEALVEAA 110
|
This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. Length = 110 |
| >gnl|CDD|173442 PTZ00153, PTZ00153, lipoamide dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 152 bits (385), Expect = 2e-39
Identities = 145/587 (24%), Positives = 231/587 (39%), Gaps = 119/587 (20%)
Query: 33 NTLTPFSHNCFSLLYFQCRRRHVA-ARAKSDNGAELPSHYDFDLFTIGAGSGGVRASRFA 91
LTP + L Q R A + + + S ++D+ IG G GG A+ A
Sbjct: 77 GILTPMPSSA-RLSSPQPRSEKSLRANGFATSQSMNFSDEEYDVGIIGCGVGGHAAAINA 135
Query: 92 ANFGASVAICELPFSTISSETTGG---VGGTCVLRGCVPKKLLVYASKFSHEFD------ 142
G V I TG +GGTCV GC+P K L+YA+ E
Sbjct: 136 MERGLKVII-----------FTGDDDSIGGTCVNVGCIPSKALLYATGKYRELKNLAKLY 184
Query: 143 ----ESNGFGWKYGTEPQHDWSTLIANK------------NAELQRLTGIYKNILINAGI 186
+N F K G + + L+A+ + + +L G +N L +
Sbjct: 185 TYGIYTNAF--KNGKNDPVERNQLVADTVQIDITKLKEYTQSVIDKLRGGIENGLKSKKF 242
Query: 187 TL-------IEGRGKIVDPHTV--DVDGKLYSARHILISVGGRPFIPD-IPGSEYAI-DS 235
I RG IVD +T+ + GK + ++I+I+ G P IPD I + ++ S
Sbjct: 243 CKNSEHVQVIYERGHIVDKNTIKSEKSGKEFKVKNIIIATGSTPNIPDNIEVDQKSVFTS 302
Query: 236 DAALDLPSKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRDFVAEQ 295
D A+ L + IVG G I LEF I++ L SEV F ++L D D+ + E+
Sbjct: 303 DTAVKLEGLQNYMGIVGMGIIGLEFMDIYTALGSEVVSFEYSPQLLPLLDADVAKY-FER 361
Query: 296 MSL--RGIEFHTE-----------ESPQAILKS--------TDGSLSVKTNKGTVDGFSH 334
+ L + + H P I S + VD
Sbjct: 362 VFLKSKPVRVHLNTLIEYVRAGKGNQPVIIGHSERQTGESDGPKKNMNDIKETYVDS--- 418
Query: 335 VMFATGRRPNTKNLGLEKVGVKMTKNGAIEVDEY------SGTAVPSIWAVGDVTDRINL 388
+ ATGR+PNT NLGL+K+ ++M K G + VDE+ +I+ +GD + L
Sbjct: 419 CLVATGRKPNTNNLGLDKLKIQM-KRGFVSVDEHLRVLREDQEVYDNIFCIGDANGKQML 477
Query: 389 TPVALME-----------GGALAKTLFQAEPTKP-DYSAVPSAVFSQPPIGQVGLSEEQA 436
A + G + +KP Y +PS ++ P + +GL+E++A
Sbjct: 478 AHTASHQALKVVDWIEGKGKENVNINVENWASKPIIYKNIPSVCYTTPELAFIGLTEKEA 537
Query: 437 IQEYG------DIDVFTANFRPLKATLSGLPDRI------------------FMKLVLCA 472
+ Y +I + AN + L P+ +K+V
Sbjct: 538 KELYPPDNVGVEISFYKANSKVLCENNISFPNNSKNNSYNKGKYNTVDNTEGMVKIVYLK 597
Query: 473 KTNKVLGLHMCGEDAPEIVQGFAVAVKAGLTKADFDATVGVHPTAAE 519
T ++LG+ + G A ++ +A+ L+ D V HPT +E
Sbjct: 598 DTKEILGMFIVGSYASILIHEGVLAINLKLSVKDLAHMVHSHPTISE 644
|
Length = 659 |
| >gnl|CDD|181958 PRK09564, PRK09564, coenzyme A disulfide reductase; Reviewed | Back alignment and domain information |
|---|
Score = 115 bits (291), Expect = 7e-28
Identities = 98/326 (30%), Positives = 150/326 (46%), Gaps = 53/326 (16%)
Query: 213 ILISVGGRPFIPDIPGSE----YAI----DSDAALDLPSKPEK--IAIVGGGYIALEFAG 262
++I+ G RP IP I Y + D A +L E I I+G G+I LE
Sbjct: 107 LMIATGARPIIPPIKNINLENVYTLKSMEDGLALKELLKDEEIKNIVIIGAGFIGLEAVE 166
Query: 263 IFSGLTSEVHVFIRQKKVL-RGFDEDIRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLS 321
L V + + ++L FD++I D + E++ G+E H E ++++ D
Sbjct: 167 AAKHLGKNVRIIQLEDRILPDSFDKEITDVMEEELRENGVELHLNEFVKSLI-GEDKVEG 225
Query: 322 VKTNKGTVDGFSHVMFATGRRPNTKNLGLEKVGVKMTKNGAIEVDEYSGTAVPSIWAVGD 381
V T+KG + V+ ATG +PNT+ LE G+K KNGAI VDEY T++ +I+A GD
Sbjct: 226 VVTDKGEYEA-DVVIVATGVKPNTE--FLEDTGLKTLKNGAIIVDEYGETSIENIYAAGD 282
Query: 382 -------VTDRINLTPVAL-------MEGGALA-------KTLFQAEPTKPDYSAVPSAV 420
V+++ P+A M G LA TL A D A
Sbjct: 283 CATIYNIVSNKNVYVPLATTANKLGRMVGENLAGRHVSFKGTLGSACIKVLDLEA----- 337
Query: 421 FSQPPIGQVGLSEEQAIQEYGDIDVFTANFRPLKATLSGLPDR--IFMKLVLCAKTNKVL 478
+ GL+EE+A ++ G ID T + T + P + +++KL+ A T +L
Sbjct: 338 ------ARTGLTEEEA-KKLG-IDYKTVFIKDKNHT-NYYPGQEDLYVKLIYEADTKVIL 388
Query: 479 GLHMCGE-DAPEIVQGFAVAVKAGLT 503
G + G+ A + AVA+ A LT
Sbjct: 389 GGQIIGKKGAVLRIDALAVAIYAKLT 414
|
Length = 444 |
| >gnl|CDD|163244 TIGR03385, CoA_CoA_reduc, CoA-disulfide reductase | Back alignment and domain information |
|---|
Score = 112 bits (281), Expect = 1e-26
Identities = 83/318 (26%), Positives = 136/318 (42%), Gaps = 32/318 (10%)
Query: 213 ILISVGGRPFIPDIPGSEYAI--------DSDA--ALDLPSKPEKIAIVGGGYIALEFAG 262
+++S G P +P+I G I D+DA +K E + I+GGGYI +E A
Sbjct: 95 LILSPGASPIVPNIEGINLDIVFTLRNLEDTDAIKQYIDKNKVENVVIIGGGYIGIEMAE 154
Query: 263 IFSGLTSEVHVFIRQKKVLRG-FDEDIRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLS 321
V + R +++L FDE++ V E++ I E +I +
Sbjct: 155 ALRERGKNVTLIHRSERILNKLFDEEMNQIVEEELKKHEINLRLNEEVDSIEGE--ERVK 212
Query: 322 VKTNKGTVDGFSHVMFATGRRPNTKNLGLEKVGVKMTKNGAIEVDEYSGTAVPSIWAVGD 381
V T+ G V+ ATG +PN++ + G+K+ + GAI V+E T+VP+I+A GD
Sbjct: 213 VFTSGGVYQ-ADMVILATGIKPNSELA--KDSGLKLGETGAIWVNEKFQTSVPNIYAAGD 269
Query: 382 VTDRIN----------LTPVALMEGGALAKTLFQAEPTKPDYSAVPSAVFSQPPIGQVGL 431
V + N L A G + + + F I G+
Sbjct: 270 VAESHNIITKKPAWVPLAWGANKMGRIAGENIAGNDIEFKGVLGTNITKFFDLTIASTGV 329
Query: 432 SEEQAIQEYGDIDVFTANFRPLKATLSGLPDR--IFMKLVLCAKTNKVLGLHMCGEDAPE 489
+E +A + +ID T F K + P + +KL+ T ++LG G++ +
Sbjct: 330 TENEAKKL--NIDYKTV-FVKAKTHANYYPGNSPLHLKLIYEKDTRRILGAQAVGKEGAD 386
Query: 490 I-VQGFAVAVKAGLTKAD 506
+ A A+ AGLT D
Sbjct: 387 KRIDVLAAAIMAGLTVKD 404
|
Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol [Cellular processes, Detoxification]. Length = 427 |
| >gnl|CDD|215691 pfam00070, Pyr_redox, Pyridine nucleotide-disulphide oxidoreductase | Back alignment and domain information |
|---|
Score = 88.8 bits (221), Expect = 1e-21
Identities = 29/81 (35%), Positives = 45/81 (55%)
Query: 247 KIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRDFVAEQMSLRGIEFHTE 306
++ +VGGGYI LEFA + L S+V V R+ ++LRGFDE+I + E++ GIE
Sbjct: 1 RVVVVGGGYIGLEFASALAKLGSKVTVVERRDRLLRGFDEEIAKILQEKLEKNGIEVLLN 60
Query: 307 ESPQAILKSTDGSLSVKTNKG 327
+ + I + DG +
Sbjct: 61 TTVEEIEGNGDGVVVKLKTGD 81
|
This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain. Length = 82 |
| >gnl|CDD|223523 COG0446, HcaD, Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Score = 92.3 bits (229), Expect = 4e-20
Identities = 90/423 (21%), Positives = 152/423 (35%), Gaps = 45/423 (10%)
Query: 114 GGVGGTCV---LRGCVPK---KLLVYASKFSHEFDESNGFGWKYGTEPQHDWSTLIANKN 167
GG G LR + L+ K+S+ Y L
Sbjct: 6 GGAAGLSAATTLRRLLLAAEITLIGREPKYSYYR----CPLSLYVGGGIASLEDLR--YP 59
Query: 168 AELQRLTGIYKNILINAGITLIEGRGKIVDPHTVDVDGKLYSARHILISVGGRPFIPDIP 227
R TGI ++ +T I+ + V +D +++++ G RP P I
Sbjct: 60 PRFNRATGI--DVRTGTEVTSID-----PENKVVLLDDGEIEYDYLVLATGARPRPPPIS 112
Query: 228 GSEYAI------DSDAALDLPSKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVL 281
E + D++A P+ + +VG G I LE A + +V + ++
Sbjct: 113 DWEGVVTLRLREDAEALKGGAEPPKDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLG 172
Query: 282 -RGFDEDIRDFVAEQMSLRGIEFHTEESPQAILKSTDG--SLSVKTNKGTVDGFSHVMFA 338
+ D ++ + +AE + G+E + + V G V+
Sbjct: 173 GQLLDPEVAEELAELLEKYGVELLLGTKVVGVEGKGNTLVVERVVGIDGEEIKADLVIIG 232
Query: 339 TGRRPNTKNLGLEKVGVKMTKNGAIEVDEYSGTA-VPSIWAVGDVTD----------RIN 387
G RPN L + + GA+ VDE GT+ P ++A GDV + RI
Sbjct: 233 PGERPNV-VLANDALPGLALAGGAVLVDERGGTSKDPDVYAAGDVAEIPAAETGKGGRIA 291
Query: 388 LTPVALMEGGALAKTLFQAEPTKPDYSAVPSAVFSQPPIGQVGLSEEQAIQEYGDIDVFT 447
L +A+ G A+ + A V S V GL+E + + V +
Sbjct: 292 LWAIAVAAGRIAAENIAGALRIPGLLGTVISDVGDLCAA-STGLTEG-KERGIDVVLVVS 349
Query: 448 ANFRPLKATLSGLPDRIFMKLVLCAKTNKVLGLHMCGEDAPEIVQGFAVAVKAGLTKADF 507
P G + + +KLV A T ++LG + + + A+A+ G T A+
Sbjct: 350 GGKDPRAHLYPG-AELVGIKLVGDADTGRILGGQE--LEVLKRIGALALAIGLGDTVAEL 406
Query: 508 DAT 510
DA
Sbjct: 407 DAL 409
|
Length = 415 |
| >gnl|CDD|223566 COG0492, TrxB, Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 82.0 bits (203), Expect = 3e-17
Identities = 57/220 (25%), Positives = 86/220 (39%), Gaps = 31/220 (14%)
Query: 181 LINAGITLIEGRGKIVDPHTVDVDGKLYSARHILISVGGRPFIPDIPGSE--------YA 232
++ + +E G V D Y A+ ++I+ G +PG E Y
Sbjct: 78 IVEDEVEKVELEGGPF---KVKTDKGTYEAKAVIIATGAGARKLGVPGEEEFEGKGVSYC 134
Query: 233 IDSDAALDLPSKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRDFV 292
D K + + ++GGG A+E A S + +V + R+ + R + +
Sbjct: 135 ATCDGFF----KGKDVVVIGGGDSAVEEALYLSKIAKKVTLVHRRDE-FRAEEILVERL- 188
Query: 293 AEQMSLRGIEFHTEESPQAILKSTDGSLSVKTNKGT-----VDGFSHVMFATGRRPNTKN 347
IE T + IL + +K KG VDG A G PNT
Sbjct: 189 ---KKNVKIEVLTNTVVKEILGDDVEGVVLKNVKGEEKELPVDGVF---IAIGHLPNT-- 240
Query: 348 LGLEKVGVKMTKNGAIEVDEYSGTAVPSIWAVGDVTDRIN 387
L K + +NG I VDE T+VP I+A GDV D+
Sbjct: 241 -ELLKGLGVLDENGYIVVDEEMETSVPGIFAAGDVADKNG 279
|
Length = 305 |
| >gnl|CDD|224171 COG1251, NirB, NAD(P)H-nitrite reductase [Energy production and conversion] | Back alignment and domain information |
|---|
Score = 74.7 bits (184), Expect = 5e-14
Identities = 65/229 (28%), Positives = 96/229 (41%), Gaps = 31/229 (13%)
Query: 177 YKNILINA-------GITLIEGRGKI-VDPHTVDV---DGKLYSARHILISVGGRPFIPD 225
++I +N GITL G I +D V G+ S ++I+ G PFI
Sbjct: 58 AEDISLNRNDWYEENGITLYTGEKVIQIDRANKVVTTDAGRTVSYDKLIIATGSYPFILP 117
Query: 226 IPGSE-------YAI-DSDAALDLPSKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQ 277
IPGS+ I D +A LD +K ++GGG + LE A L EV V
Sbjct: 118 IPGSDLPGVFVYRTIDDVEAMLDCARNKKKAVVIGGGLLGLEAARGLKDLGMEVTVVHIA 177
Query: 278 KKVL-RGFDEDIRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVM 336
++ R D + ++ GI+ E++ + I+ V+ GT V+
Sbjct: 178 PTLMERQLDRTAGRLLRRKLEDLGIKVLLEKNTEEIVGEDKVEG-VRFADGTEIPADLVV 236
Query: 337 FATGRRPNT---KNLGLEKVGVKMTKNGAIEVDEYSGTAVPSIWAVGDV 382
A G RPN K GL N I V++Y T+ P I+AVG+
Sbjct: 237 MAVGIRPNDELAKEAGLA-------VNRGIVVNDYMQTSDPDIYAVGEC 278
|
Length = 793 |
| >gnl|CDD|162827 TIGR02374, nitri_red_nirB, nitrite reductase [NAD(P)H], large subunit | Back alignment and domain information |
|---|
Score = 70.2 bits (172), Expect = 1e-12
Identities = 57/244 (23%), Positives = 105/244 (43%), Gaps = 35/244 (14%)
Query: 156 QHDWS----TLIANKNAELQRLTGIYKNILINAGITLIEGRGKIVDPHTVDVDGKLYSAR 211
Q + TL + E +T + + I+ K V + G+ S
Sbjct: 48 QGEADLDDITLNSKDWYEKHGIT-----LYTGETVIQIDTDQKQV----ITDAGRTLSYD 98
Query: 212 HILISVGGRPFIPDIPGSE----YAI----DSDAALDLPSKPEKIAIVGGGYIALEFAGI 263
++++ G PFI IPG++ Y D DA + + + +K A++GGG + LE A
Sbjct: 99 KLILATGSYPFILPIPGADKKGVYVFRTIEDLDAIMAMAQRFKKAAVIGGGLLGLEAAVG 158
Query: 264 FSGLTSEVHV-----FIRQKKVLRGFDEDIRDFVAEQMSLRGIEFHTEESPQAILKSTDG 318
L +V V + K++ D+ + ++ +G+ F E+ I+ +T
Sbjct: 159 LQNLGMDVSVIHHAPGLMAKQL----DQTAGRLLQRELEQKGLTFLLEKDTVEIVGATKA 214
Query: 319 SLSVKTNKGTVDGFSHVMFATGRRPNTKNLGLEKVGVKMTKNGAIEVDEYSGTAVPSIWA 378
++ G+ ++ A G RPN + L + G+K+ N I V++ T+ P I+A
Sbjct: 215 D-RIRFKDGSSLEADLIVMAAGIRPNDE-LAVS-AGIKV--NRGIIVNDSMQTSDPDIYA 269
Query: 379 VGDV 382
VG+
Sbjct: 270 VGEC 273
|
[Central intermediary metabolism, Nitrogen metabolism]. Length = 785 |
| >gnl|CDD|233345 TIGR01292, TRX_reduct, thioredoxin-disulfide reductase | Back alignment and domain information |
|---|
Score = 67.3 bits (165), Expect = 3e-12
Identities = 57/195 (29%), Positives = 94/195 (48%), Gaps = 23/195 (11%)
Query: 204 DGKLYSARHILISVGGRPFIPDIPGSEY----AIDSDAALDLP-SKPEKIAIVGGGYIAL 258
DGK Y+A+ ++I+ G IPG + + A D P K +++A+VGGG A+
Sbjct: 94 DGKEYTAKAVIIATGASARKLGIPGEDEFWGRGVSYCATCDGPFFKNKEVAVVGGGDSAI 153
Query: 259 EFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRDFVAEQMSLRGIEFHTEESPQAIL-KSTD 317
E A + + +V + R+ K R ++ + D + + IEF + + I+ +
Sbjct: 154 EEALYLTRIAKKVTLVHRRDK-FRA-EKILLDRLKK---NPKIEFLWNSTVKEIVGDNKV 208
Query: 318 GSLSVK-TNKGT-----VDGFSHVMFATGRRPNTKNLGLEKVGVKMTKNGAIEVDEYSGT 371
+ +K T G VDG V A G PNT+ L +++ +NG I DE T
Sbjct: 209 EGVKIKNTVTGEEEELEVDG---VFIAIGHEPNTELLKGL---LELDENGYIVTDEGMRT 262
Query: 372 AVPSIWAVGDVTDRI 386
+VP ++A GDV D+
Sbjct: 263 SVPGVFAAGDVRDKG 277
|
This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (pfam00070) [Energy metabolism, Electron transport]. Length = 299 |
| >gnl|CDD|224172 COG1252, Ndh, NADH dehydrogenase, FAD-containing subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Score = 66.9 bits (164), Expect = 7e-12
Identities = 49/229 (21%), Positives = 81/229 (35%), Gaps = 46/229 (20%)
Query: 215 ISVGGRPFIPDIPG-SEYAID----SDA-------------ALDLPSKPEK--IAIVGGG 254
+++G IPG +EYA DA A I IVGGG
Sbjct: 105 VALGSETNYFGIPGAAEYAFGLKTLEDALRLRRHLLEAFEKASQEEDDRALLTIVIVGGG 164
Query: 255 YIALEFAG-----------IFSGLTSEVHVFI--RQKKVLRGFDEDIRDFVAEQMSLRGI 301
+E AG F SE+ V + ++L F + + + G+
Sbjct: 165 PTGVELAGELAERLHRLLKKFRVDPSELRVILVEAGPRILPMFPPKLSKYAERALEKLGV 224
Query: 302 EFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNTKNLGLEKVGVKMTKNG 361
E + T +++K + + V++A G R + L + G++ + G
Sbjct: 225 EVLLGTPVTEV---TPDGVTLKDGEEEIPA-DTVVWAAGVRASP--LLKDLSGLETDRRG 278
Query: 362 AIEVDEY-SGTAVPSIWAVGDVTDRINLTPV------ALMEGGALAKTL 403
+ V+ P I+A GD I+ PV A +G AK +
Sbjct: 279 RLVVNPTLQVPGHPDIFAAGDCAAVIDPRPVPPTAQAAHQQGEYAAKNI 327
|
Length = 405 |
| >gnl|CDD|184103 PRK13512, PRK13512, coenzyme A disulfide reductase; Provisional | Back alignment and domain information |
|---|
Score = 64.4 bits (157), Expect = 5e-11
Identities = 37/137 (27%), Positives = 65/137 (47%), Gaps = 7/137 (5%)
Query: 246 EKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRDFVAEQMSLRGIEFHT 305
+K +VG GYI+LE + R K+ + D D+ + +++ R I +
Sbjct: 149 DKALVVGAGYISLEVLENLYERGLHPTLIHRSDKINKLMDADMNQPILDELDKREIPYRL 208
Query: 306 EESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNTKNLGLEKVGVKMTKNGAIEV 365
E AI +G+ V G V+ + ++ G PN+K + E +K+ G I V
Sbjct: 209 NEEIDAI----NGNE-VTFKSGKVEHYDMIIEGVGTHPNSKFI--ESSNIKLDDKGFIPV 261
Query: 366 DEYSGTAVPSIWAVGDV 382
++ T VP+I+A+GD+
Sbjct: 262 NDKFETNVPNIYAIGDI 278
|
Length = 438 |
| >gnl|CDD|179902 PRK04965, PRK04965, NADH:flavorubredoxin oxidoreductase; Provisional | Back alignment and domain information |
|---|
Score = 58.4 bits (142), Expect = 4e-09
Identities = 62/250 (24%), Positives = 97/250 (38%), Gaps = 47/250 (18%)
Query: 187 TLIEGRGKIVDP--HTVDVDGKLYSARHILISVGGRPFIPDIPG----------SEYAID 234
T + +D V G + ++++ G F+P IPG EY
Sbjct: 79 TWVTD----IDAEAQVVKSQGNQWQYDKLVLATGASAFVPPIPGRELMLTLNSQQEYR-A 133
Query: 235 SDAALDLPSKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRDFVA- 293
++ L +++ +VGGG I E A V + +L + V+
Sbjct: 134 AETQLRD---AQRVLVVGGGLIGTELAMDLCRAGKAVTLVDNAASLLASL---MPPEVSS 187
Query: 294 ---EQMSLRGIEFHTEESPQAILKSTDGSLSVKTNKG---TVDGFSHVMFATGRRPNTKN 347
+++ G+ + Q + K+ G + + G VD V+ A G RPNT
Sbjct: 188 RLQHRLTEMGVHLLLKSQLQGLEKTDSG-IRATLDSGRSIEVDA---VIAAAGLRPNTA- 242
Query: 348 LGLEKVGVKMTKNGAIEVDEYSGTAVPSIWAVGDVTDRIN------LTPVALMEGGALAK 401
L G+ + N I VD Y T+ P I+A+GD + IN L P + ALAK
Sbjct: 243 LARR-AGLAV--NRGIVVDSYLQTSAPDIYALGDCAE-INGQVLPFLQP-IQLSAMALAK 297
Query: 402 TLF-QAEPTK 410
L Q P K
Sbjct: 298 NLLGQNTPLK 307
|
Length = 377 |
| >gnl|CDD|234134 TIGR03169, Nterm_to_SelD, pyridine nucleotide-disulfide oxidoreductase family protein | Back alignment and domain information |
|---|
Score = 58.1 bits (141), Expect = 4e-09
Identities = 46/227 (20%), Positives = 82/227 (36%), Gaps = 41/227 (18%)
Query: 184 AGITLIEGRGKIVDPHTVDVDGKLYSARH-------ILISVGGRPFIPDIPG-SEYAI-- 233
AG + +DP K+ A + + VG + + G ++ A+
Sbjct: 67 AGARFVIAEATGIDPDR----RKVLLANRPPLSYDVLSLDVGSTTPLSGVEGAADLAVPV 122
Query: 234 -----------DSDAALDLPSKPEKIAIVGGGYIALEFAGIF------SGLTSEVHVFIR 276
+ D P +++A+VGGG +E A GL +V +
Sbjct: 123 KPIENFLARWEALLESADAPPGTKRLAVVGGGAAGVEIALALRRRLPKRGLRGQVTLI-A 181
Query: 277 QKKVLRGFDEDIRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVM 336
+L GF +R V ++ RGIE H ++ G ++
Sbjct: 182 GASLLPGFPAKVRRLVLRLLARRGIEVHEGAPVTRG-----PDGALILADGRTLPADAIL 236
Query: 337 FATGRRPNTKNLGLEKVGVKMTKNGAIEVDEY-SGTAVPSIWAVGDV 382
+ATG R L + G+ + ++G + VD + P ++A GD
Sbjct: 237 WATGARAPP---WLAESGLPLDEDGFLRVDPTLQSLSHPHVFAAGDC 280
|
Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown. Length = 364 |
| >gnl|CDD|184951 PRK14989, PRK14989, nitrite reductase subunit NirD; Provisional | Back alignment and domain information |
|---|
Score = 57.1 bits (138), Expect = 2e-08
Identities = 55/224 (24%), Positives = 99/224 (44%), Gaps = 38/224 (16%)
Query: 179 NILINAGITLIEGRGKIVDPHTVDVDGKLYSARHILISVGGRPFIPDIPGSEY------- 231
+L+ I + K++ G+ ++++ G P+IP I GSE
Sbjct: 75 KVLVGERAITINRQEKVIHSSA----GRTVFYDKLIMATGSYPWIPPIKGSETQDCFVYR 130
Query: 232 AIDSDAALDLPSKPEKI-AIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRD 290
I+ A++ ++ K A+VGGG + LE AG L E HV I +L
Sbjct: 131 TIEDLNAIEACARRSKRGAVVGGGLLGLEAAGALKNLGVETHV-IEFAPML--------- 180
Query: 291 FVAEQMS------LR------GIEFHTEESPQAILKS-TDGSLSVKTNKGTVDGFSHVMF 337
+AEQ+ LR G+ HT ++ I++ + +++ G+ ++F
Sbjct: 181 -MAEQLDQMGGEQLRRKIESMGVRVHTSKNTLEIVQEGVEARKTMRFADGSELEVDFIVF 239
Query: 338 ATGRRPNTKNLGLEKVGVKMTKNGAIEVDEYSGTAVPSIWAVGD 381
+TG RP K L + G+ + G I +++ T+ P I+A+G+
Sbjct: 240 STGIRPQDK-LA-TQCGLAVAPRGGIVINDSCQTSDPDIYAIGE 281
|
Length = 847 |
| >gnl|CDD|130383 TIGR01316, gltA, glutamate synthase (NADPH), homotetrameric | Back alignment and domain information |
|---|
Score = 56.0 bits (135), Expect = 2e-08
Identities = 76/360 (21%), Positives = 129/360 (35%), Gaps = 69/360 (19%)
Query: 68 PSHYDFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVP 127
+H + IGAG G+ + A G SV + E + GGV + +P
Sbjct: 131 STH--KKVAVIGAGPAGLACASELAKAGHSVTVFE------ALHKPGGVVTYGIPEFRLP 182
Query: 128 KKLLVYASKFSHEFDESNGFGWKYGTEPQHDWSTLIANKNAELQRLTGIYKNILINAGIT 187
K+++V E G + + K A L+ L Y + I G
Sbjct: 183 KEIVV------TEIKTLKKLGVTFRMN-------FLVGKTATLEELFSQYDAVFIGTG-- 227
Query: 188 LIEGRGKIVDPHTVDVDGKLYSARHILISVGGRPFIPDIPGSEYAIDSDAALDLP-SKPE 246
G K+++ ++ G +YSA L + D P +
Sbjct: 228 --AGLPKLMNIPGEELCG-VYSANDFLTRA-----------NLMKAYEFPHADTPVYAGK 273
Query: 247 KIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRDFVAE--QMSLRGIEFH 304
+ ++GGG A++ A L +EVH R+ + ED+ V E G++FH
Sbjct: 274 SVVVIGGGNTAVDSARTALRLGAEVHCLYRRTR------EDMTARVEEIAHAEEEGVKFH 327
Query: 305 TEESPQAILKSTDGSL---------------SVKTNKGTVDGFSH------VMFATGRRP 343
P I+ +G++ S + V+ A G
Sbjct: 328 FLCQPVEIIGDEEGNVRAVKFRKMDCQEQIDSGERRFLPCGDAECKLEADAVIVAIGNGS 387
Query: 344 NTKNLGLEKVGVKMTKNGAIEVDEYSGTAVPSIWAVGDVTDRINLTPVALMEGGALAKTL 403
N + E +K ++ G I VDE T++P ++A GD+ A+ +G AK++
Sbjct: 388 NP--IMAETTRLKTSERGTIVVDEDQRTSIPGVFAGGDIILGAATVIRAMGQGKRAAKSI 445
|
This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH [Amino acid biosynthesis, Glutamate family]. Length = 449 |
| >gnl|CDD|185553 PTZ00318, PTZ00318, NADH dehydrogenase-like protein; Provisional | Back alignment and domain information |
|---|
Score = 52.5 bits (126), Expect = 3e-07
Identities = 65/280 (23%), Positives = 106/280 (37%), Gaps = 62/280 (22%)
Query: 212 HILISVGGRPFIPDIPG-SEYA----------------IDSDAALDLPSKPEKIA----- 249
++++ G RP +IPG E A + LP+ +
Sbjct: 116 KLVVAHGARPNTFNIPGVEERAFFLKEVNHARGIRKRIVQCIERASLPTTSVEERKRLLH 175
Query: 250 --IVGGGYIALEFAG------------IFSGLTSEVHVFIRQ--KKVLRGFDEDIRDFVA 293
+VGGG +EFA + L E V + + +VL FD+ +R +
Sbjct: 176 FVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSEVLGSFDQALRKYGQ 235
Query: 294 EQMSLRGIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATG--RRPNTKNLGLE 351
++ G++ T+ + + +L V G V V+++TG P TK L ++
Sbjct: 236 RRLRRLGVDIRTKTAVKEVLDK-----EVVLKDGEVIPTGLVVWSTGVGPGPLTKQLKVD 290
Query: 352 KVGVKMTKNGAIEVDEYSGTA-VPSIWAVGDVT--DRINLTP---VALMEGGALAKTLFQ 405
K T G I VD++ +P+++A+GD + L VA +G LAK
Sbjct: 291 K-----TSRGRISVDDHLRVKPIPNVFALGDCAANEERPLPTLAQVASQQGVYLAKEFNN 345
Query: 406 AEPTKPDYSAVPSAVFSQPPIGQ-VGLSEEQAIQEYGDID 444
KP S F +G L AI + G D
Sbjct: 346 ELKGKP-----MSKPFVYRSLGSLAYLGNYSAIVQLGAFD 380
|
Length = 424 |
| >gnl|CDD|234119 TIGR03140, AhpF, alkyl hydroperoxide reductase subunit F | Back alignment and domain information |
|---|
Score = 46.2 bits (110), Expect = 3e-05
Identities = 58/238 (24%), Positives = 95/238 (39%), Gaps = 36/238 (15%)
Query: 185 GITLIEGRGKIVDPHTVD-------VDGKLYSARHILISVGGRPFIPDIPGSEYAIDSDA 237
I L+E + + T D G++ A+ ++++ G R +PG + I
Sbjct: 281 PIDLMENQ-RAKKIETEDGLIVVTLESGEVLKAKSVIVATGARWRKLGVPGEKEYIGKGV 339
Query: 238 AL----DLP-SKPEKIAIVGGGYIALEFAGIFSGLTSEVHVF-----IRQKKVLRGFDED 287
A D P K + +A++GGG +E A +G+ V V ++ KVL
Sbjct: 340 AYCPHCDGPFFKGKDVAVIGGGNSGIEAAIDLAGIVRHVTVLEFADELKADKVL------ 393
Query: 288 IRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVK-----TNKGTVDGFSHVMFATGRR 342
+ SL ++ T I+ D ++ + + V G
Sbjct: 394 ----QDKLKSLPNVDILTSAQTTEIVGDGDKVTGIRYQDRNSGEEKQLDLDGVFVQIGLV 449
Query: 343 PNTKNLGLEKVGVKMTKNGAIEVDEYSGTAVPSIWAVGDVTDRINLTPVALMEGGALA 400
PNT+ L K V++ + G I +DE T+VP I+A GDVT + M GA A
Sbjct: 450 PNTEWL---KDAVELNRRGEIVIDERGRTSVPGIFAAGDVTTVPYKQIIIAMGEGAKA 504
|
This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP [Cellular processes, Detoxification, Cellular processes, Adaptations to atypical conditions]. Length = 515 |
| >gnl|CDD|222125 pfam13434, K_oxygenase, L-lysine 6-monooxygenase (NADPH-requiring) | Back alignment and domain information |
|---|
Score = 44.8 bits (107), Expect = 6e-05
Identities = 26/85 (30%), Positives = 38/85 (44%), Gaps = 18/85 (21%)
Query: 199 HTVDV-DGKLYSARHILISVGGRPFIPD----IPG------SEYAIDSDAALDLPSKPEK 247
HT D + Y AR++++ G P+IP+ +PG SEY + L ++
Sbjct: 132 HTRDTGTEQTYLARNLVLGTGTTPYIPECAKPLPGERVFHSSEYLLRKPRLL----AGKR 187
Query: 248 IAIVGGGYIALEFAGIFSGLTSEVH 272
I +VGGG A E IF L
Sbjct: 188 ITVVGGGQSAAE---IFLDLLRRQP 209
|
This is family of Rossmann fold oxidoreductases that catalyzes the NADPH-dependent hydroxylation of lysine at the N6 position, EC:1.14.13.59. Length = 335 |
| >gnl|CDD|226160 COG3634, AhpF, Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 43.6 bits (103), Expect = 2e-04
Identities = 49/218 (22%), Positives = 85/218 (38%), Gaps = 40/218 (18%)
Query: 204 DGKLYSARHILISVGGRPFIPDIPGSEYAIDSDAAL----DLP-SKPEKIAIVGGGYIAL 258
+G + AR ++++ G R ++PG + + A D P K +++A++GGG +
Sbjct: 308 NGAVLKARTVILATGARWRNMNVPGEDEYRNKGVAYCPHCDGPLFKGKRVAVIGGGNSGV 367
Query: 259 EFAGIFSGLTSEVHVF----------IRQKKVLRGFDEDI------RDFVAEQMSLRGIE 302
E A +G+ V + + Q K+ + I + + + G+E
Sbjct: 368 EAAIDLAGIVEHVTLLEFAPELKADAVLQDKLRSLPNVTIITNAQTTEVKGDGDKVTGLE 427
Query: 303 FHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNTKNLGLEKVGVKMTKNGA 362
+ S + +G V G PNT+ L K V++ + G
Sbjct: 428 YRDRVSGEEHHLELEG----------------VFVQIGLLPNTEWL---KGAVELNRRGE 468
Query: 363 IEVDEYSGTAVPSIWAVGDVTDRINLTPVALMEGGALA 400
I VD T VP ++A GD T + M GA A
Sbjct: 469 IIVDARGETNVPGVFAAGDCTTVPYKQIIIAMGEGAKA 506
|
Length = 520 |
| >gnl|CDD|226017 COG3486, IucD, Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 3e-04
Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 6/62 (9%)
Query: 204 DGKLYSARHILISVGGRPFIP----DIPGSEYAIDSDAALDLPSKPEK--IAIVGGGYIA 257
+G +Y AR++++ VG +P+IP + G S+ P +K + ++G G A
Sbjct: 140 NGTVYRARNLVLGVGTQPYIPPCFRSLIGERVFHSSEYLERHPELLQKRSVTVIGSGQSA 199
Query: 258 LE 259
E
Sbjct: 200 AE 201
|
Length = 436 |
| >gnl|CDD|236967 PRK11749, PRK11749, dihydropyrimidine dehydrogenase subunit A; Provisional | Back alignment and domain information |
|---|
Score = 42.1 bits (100), Expect = 6e-04
Identities = 50/221 (22%), Positives = 82/221 (37%), Gaps = 72/221 (32%)
Query: 213 ILISVG-GRPFIPDIPGSE-----YAID-------SDAALDLPSKPEKIAIVGGGYIALE 259
+ I G G P IPG A+D + A DLP +++ ++GGG A++
Sbjct: 229 VFIGTGAGLPRFLGIPGENLGGVYSAVDFLTRVNQAVADYDLP-VGKRVVVIGGGNTAMD 287
Query: 260 FAGIFSGLTS------EVHVFIRQKKVLRGFDEDIRDFVAEQMSLR----------GIEF 303
A T+ V + R RG +E M G+EF
Sbjct: 288 AAR-----TAKRLGAESVTIVYR-----RGREE---------MPASEEEVEHAKEEGVEF 328
Query: 304 HTEESPQAILKSTDGSLSVK-------------TNKGTVDGFSH-------VMFATGRRP 343
+P IL V+ + ++G S V+ A G+ P
Sbjct: 329 EWLAAPVEILGDEGRVTGVEFVRMELGEPDASGRRRVPIEG-SEFTLPADLVIKAIGQTP 387
Query: 344 NTKNLGLEKVGVKMTKNGAIEVDEYSG-TAVPSIWAVGDVT 383
N L G+++ + G I D+ +G T++P ++A GD+
Sbjct: 388 NPLILSTTP-GLELNRWGTIIADDETGRTSLPGVFAGGDIV 427
|
Length = 457 |
| >gnl|CDD|237197 PRK12770, PRK12770, putative glutamate synthase subunit beta; Provisional | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 7e-04
Identities = 48/216 (22%), Positives = 78/216 (36%), Gaps = 59/216 (27%)
Query: 213 ILISVGG-RPFIPDIPGSE----YAIDSDAALDL------------------PSKPEKIA 249
+LI+ G + IPG + Y+ AL+ P + +K+
Sbjct: 122 VLIATGTWKSRKLGIPGEDLPGVYS-----ALEYLFRIRAAKLGYLPWEKVPPVEGKKVV 176
Query: 250 IVGGGYIALEFA--GIFSGLTSEVHVFIRQKKVLRGFDEDIRDFVAEQMSLRGIEFHTEE 307
+VG G A++ A + G + R +I +A RG+EF
Sbjct: 177 VVGAGLTAVDAALEAVLLGAEKVYLAYRRTINEAPAGKYEIERLIA-----RGVEFLELV 231
Query: 308 SPQAILKSTDGSLS----VKTNKGTVDG-----------------FSHVMFATGRRPNTK 346
+P I+ +G + K G D V+FA G P T
Sbjct: 232 TPVRIIG--EGRVEGVELAKMRLGEPDESGRPRPVPIPGSEFVLEADTVVFAIGEIP-TP 288
Query: 347 NLGLEKVGVKMTKNGAIEVDEYSGTAVPSIWAVGDV 382
E +G+++ + G I VDE T+ ++A GDV
Sbjct: 289 PFAKECLGIELNRKGEIVVDEKHMTSREGVFAAGDV 324
|
Length = 352 |
| >gnl|CDD|182343 PRK10262, PRK10262, thioredoxin reductase; Provisional | Back alignment and domain information |
|---|
Score = 39.7 bits (92), Expect = 0.003
Identities = 42/168 (25%), Positives = 74/168 (44%), Gaps = 17/168 (10%)
Query: 244 KPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRDFVAEQMSLRGIEF 303
+ +K+A++GGG A+E A S + SEVH+ I ++ R I+ + +++ I
Sbjct: 145 RNQKVAVIGGGNTAVEEALYLSNIASEVHL-IHRRDGFRAEKILIKRLM-DKVENGNIIL 202
Query: 304 HTEESPQAILKSTDGSLSVK----TNKGTVDGF--SHVMFATGRRPNTKNLGLEKVGVKM 357
HT + + + G V+ N ++ + + A G PNT G
Sbjct: 203 HTNRTLEEVTGDQMGVTGVRLRDTQNSDNIESLDVAGLFVAIGHSPNTAIFE----GQLE 258
Query: 358 TKNGAIEVDE-----YSGTAVPSIWAVGDVTDRINLTPVALMEGGALA 400
+NG I+V + T++P ++A GDV D I + G +A
Sbjct: 259 LENGYIKVQSGIHGNATQTSIPGVFAAGDVMDHIYRQAITSAGTGCMA 306
|
Length = 321 |
| >gnl|CDD|170080 PRK09754, PRK09754, phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional | Back alignment and domain information |
|---|
Score = 39.5 bits (92), Expect = 0.004
Identities = 36/143 (25%), Positives = 59/143 (41%), Gaps = 12/143 (8%)
Query: 244 KPEK-IAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVL-RGFDEDIRDFVAEQMSLRGI 301
+PE+ + IVG G I LE A + +V V V+ R ++ ++ ++ G+
Sbjct: 142 QPERSVVIVGAGTIGLELAASATQRRCKVTVIELAATVMGRNAPPPVQRYLLQRHQQAGV 201
Query: 302 EFHTEESPQAILKSTDGS-LSVKTNKG-TVDGFSHVMFATGRRPNTKNLGLEKVGVKMTK 359
AI DG + + G T+ V++ G N + L E +
Sbjct: 202 RILLN---NAIEHVVDGEKVELTLQSGETLQA-DVVIYGIGISANDQ-LARE---ANLDT 253
Query: 360 NGAIEVDEYSGTAVPSIWAVGDV 382
I +DE T P+I+A GDV
Sbjct: 254 ANGIVIDEACRTCDPAIFAGGDV 276
|
Length = 396 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 551 | |||
| COG1249 | 454 | Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, | 100.0 | |
| PLN02546 | 558 | glutathione reductase | 100.0 | |
| KOG0405 | 478 | consensus Pyridine nucleotide-disulphide oxidoredu | 100.0 | |
| PLN02507 | 499 | glutathione reductase | 100.0 | |
| TIGR01423 | 486 | trypano_reduc trypanothione-disulfide reductase. T | 100.0 | |
| TIGR01421 | 450 | gluta_reduc_1 glutathione-disulfide reductase, ani | 100.0 | |
| PRK06116 | 450 | glutathione reductase; Validated | 100.0 | |
| TIGR01424 | 446 | gluta_reduc_2 glutathione-disulfide reductase, pla | 100.0 | |
| PRK06370 | 463 | mercuric reductase; Validated | 100.0 | |
| PTZ00058 | 561 | glutathione reductase; Provisional | 100.0 | |
| KOG1335 | 506 | consensus Dihydrolipoamide dehydrogenase [Energy p | 100.0 | |
| PRK07846 | 451 | mycothione reductase; Reviewed | 100.0 | |
| TIGR01438 | 484 | TGR thioredoxin and glutathione reductase selenopr | 100.0 | |
| PRK06467 | 471 | dihydrolipoamide dehydrogenase; Reviewed | 100.0 | |
| PTZ00153 | 659 | lipoamide dehydrogenase; Provisional | 100.0 | |
| TIGR03452 | 452 | mycothione_red mycothione reductase. Mycothiol, a | 100.0 | |
| PRK07845 | 466 | flavoprotein disulfide reductase; Reviewed | 100.0 | |
| PRK06115 | 466 | dihydrolipoamide dehydrogenase; Reviewed | 100.0 | |
| PRK07818 | 466 | dihydrolipoamide dehydrogenase; Reviewed | 100.0 | |
| PRK05249 | 461 | soluble pyridine nucleotide transhydrogenase; Prov | 100.0 | |
| TIGR02053 | 463 | MerA mercuric reductase. This model represents the | 100.0 | |
| PRK14727 | 479 | putative mercuric reductase; Provisional | 100.0 | |
| PRK14694 | 468 | putative mercuric reductase; Provisional | 100.0 | |
| PRK06416 | 462 | dihydrolipoamide dehydrogenase; Reviewed | 100.0 | |
| PRK06912 | 458 | acoL dihydrolipoamide dehydrogenase; Validated | 100.0 | |
| PRK05976 | 472 | dihydrolipoamide dehydrogenase; Validated | 100.0 | |
| PRK06292 | 460 | dihydrolipoamide dehydrogenase; Validated | 100.0 | |
| PTZ00052 | 499 | thioredoxin reductase; Provisional | 100.0 | |
| PRK08010 | 441 | pyridine nucleotide-disulfide oxidoreductase; Prov | 100.0 | |
| PRK06327 | 475 | dihydrolipoamide dehydrogenase; Validated | 100.0 | |
| PRK13748 | 561 | putative mercuric reductase; Provisional | 100.0 | |
| PRK07251 | 438 | pyridine nucleotide-disulfide oxidoreductase; Prov | 100.0 | |
| TIGR01350 | 461 | lipoamide_DH dihydrolipoamide dehydrogenase. The m | 100.0 | |
| KOG4716 | 503 | consensus Thioredoxin reductase [Posttranslational | 100.0 | |
| PRK13512 | 438 | coenzyme A disulfide reductase; Provisional | 100.0 | |
| PRK09564 | 444 | coenzyme A disulfide reductase; Reviewed | 100.0 | |
| TIGR03385 | 427 | CoA_CoA_reduc CoA-disulfide reductase. Members of | 100.0 | |
| PRK14989 | 847 | nitrite reductase subunit NirD; Provisional | 100.0 | |
| PRK04965 | 377 | NADH:flavorubredoxin oxidoreductase; Provisional | 100.0 | |
| PRK09754 | 396 | phenylpropionate dioxygenase ferredoxin reductase | 100.0 | |
| TIGR02374 | 785 | nitri_red_nirB nitrite reductase [NAD(P)H], large | 100.0 | |
| PTZ00318 | 424 | NADH dehydrogenase-like protein; Provisional | 100.0 | |
| COG1252 | 405 | Ndh NADH dehydrogenase, FAD-containing subunit [En | 100.0 | |
| TIGR01292 | 300 | TRX_reduct thioredoxin-disulfide reductase. This m | 100.0 | |
| PRK10262 | 321 | thioredoxin reductase; Provisional | 100.0 | |
| TIGR03143 | 555 | AhpF_homolog putative alkyl hydroperoxide reductas | 100.0 | |
| TIGR01316 | 449 | gltA glutamate synthase (NADPH), homotetrameric. T | 100.0 | |
| TIGR03140 | 515 | AhpF alkyl hydroperoxide reductase, F subunit. Thi | 100.0 | |
| COG1251 | 793 | NirB NAD(P)H-nitrite reductase [Energy production | 100.0 | |
| COG0492 | 305 | TrxB Thioredoxin reductase [Posttranslational modi | 100.0 | |
| KOG1336 | 478 | consensus Monodehydroascorbate/ferredoxin reductas | 100.0 | |
| PRK12831 | 464 | putative oxidoreductase; Provisional | 100.0 | |
| TIGR03169 | 364 | Nterm_to_SelD pyridine nucleotide-disulfide oxidor | 100.0 | |
| PRK15317 | 517 | alkyl hydroperoxide reductase subunit F; Provision | 100.0 | |
| PRK11749 | 457 | dihydropyrimidine dehydrogenase subunit A; Provisi | 100.0 | |
| PRK09853 | 1019 | putative selenate reductase subunit YgfK; Provisio | 100.0 | |
| PRK12778 | 752 | putative bifunctional 2-polyprenylphenol hydroxyla | 99.98 | |
| PRK12770 | 352 | putative glutamate synthase subunit beta; Provisio | 99.97 | |
| TIGR03315 | 1012 | Se_ygfK putative selenate reductase, YgfK subunit. | 99.97 | |
| PRK12810 | 471 | gltD glutamate synthase subunit beta; Reviewed | 99.97 | |
| PRK12779 | 944 | putative bifunctional glutamate synthase subunit b | 99.97 | |
| PRK12814 | 652 | putative NADPH-dependent glutamate synthase small | 99.97 | |
| PRK12775 | 1006 | putative trifunctional 2-polyprenylphenol hydroxyl | 99.96 | |
| TIGR01318 | 467 | gltD_gamma_fam glutamate synthase small subunit fa | 99.96 | |
| PRK12769 | 654 | putative oxidoreductase Fe-S binding subunit; Revi | 99.96 | |
| TIGR01317 | 485 | GOGAT_sm_gam glutamate synthases, NADH/NADPH, smal | 99.96 | |
| KOG2495 | 491 | consensus NADH-dehydrogenase (ubiquinone) [Energy | 99.96 | |
| KOG0404 | 322 | consensus Thioredoxin reductase [Posttranslational | 99.96 | |
| PRK12809 | 639 | putative oxidoreductase Fe-S binding subunit; Revi | 99.95 | |
| PRK13984 | 604 | putative oxidoreductase; Provisional | 99.95 | |
| COG0446 | 415 | HcaD Uncharacterized NAD(FAD)-dependent dehydrogen | 99.95 | |
| PLN02852 | 491 | ferredoxin-NADP+ reductase | 99.95 | |
| COG3634 | 520 | AhpF Alkyl hydroperoxide reductase, large subunit | 99.94 | |
| KOG1346 | 659 | consensus Programmed cell death 8 (apoptosis-induc | 99.94 | |
| TIGR01372 | 985 | soxA sarcosine oxidase, alpha subunit family, hete | 99.93 | |
| PRK12771 | 564 | putative glutamate synthase (NADPH) small subunit; | 99.93 | |
| PLN02172 | 461 | flavin-containing monooxygenase FMO GS-OX | 99.92 | |
| PF02852 | 110 | Pyr_redox_dim: Pyridine nucleotide-disulphide oxid | 99.9 | |
| PF00743 | 531 | FMO-like: Flavin-binding monooxygenase-like; Inter | 99.86 | |
| COG0493 | 457 | GltD NADPH-dependent glutamate synthase beta chain | 99.84 | |
| PF07992 | 201 | Pyr_redox_2: Pyridine nucleotide-disulphide oxidor | 99.81 | |
| PRK05329 | 422 | anaerobic glycerol-3-phosphate dehydrogenase subun | 99.78 | |
| PRK06567 | 1028 | putative bifunctional glutamate synthase subunit b | 99.77 | |
| KOG3851 | 446 | consensus Sulfide:quinone oxidoreductase/flavo-bin | 99.74 | |
| KOG2755 | 334 | consensus Oxidoreductase [General function predict | 99.73 | |
| COG2072 | 443 | TrkA Predicted flavoprotein involved in K+ transpo | 99.72 | |
| PF13738 | 203 | Pyr_redox_3: Pyridine nucleotide-disulphide oxidor | 99.72 | |
| KOG0399 | 2142 | consensus Glutamate synthase [Amino acid transport | 99.71 | |
| PF13434 | 341 | K_oxygenase: L-lysine 6-monooxygenase (NADPH-requi | 99.71 | |
| COG3486 | 436 | IucD Lysine/ornithine N-monooxygenase [Secondary m | 99.7 | |
| KOG1399 | 448 | consensus Flavin-containing monooxygenase [Seconda | 99.7 | |
| PTZ00188 | 506 | adrenodoxin reductase; Provisional | 99.59 | |
| COG1148 | 622 | HdrA Heterodisulfide reductase, subunit A and rela | 99.57 | |
| KOG1800 | 468 | consensus Ferredoxin/adrenodoxin reductase [Nucleo | 99.49 | |
| PF00070 | 80 | Pyr_redox: Pyridine nucleotide-disulphide oxidored | 99.48 | |
| COG2081 | 408 | Predicted flavoproteins [General function predicti | 99.43 | |
| TIGR03378 | 419 | glycerol3P_GlpB glycerol-3-phosphate dehydrogenase | 99.36 | |
| PRK07843 | 557 | 3-ketosteroid-delta-1-dehydrogenase; Reviewed | 99.33 | |
| PRK12842 | 574 | putative succinate dehydrogenase; Reviewed | 99.32 | |
| COG4529 | 474 | Uncharacterized protein conserved in bacteria [Fun | 99.3 | |
| PRK06134 | 581 | putative FAD-binding dehydrogenase; Reviewed | 99.3 | |
| PRK08401 | 466 | L-aspartate oxidase; Provisional | 99.23 | |
| PF03486 | 409 | HI0933_like: HI0933-like protein; InterPro: IPR004 | 99.23 | |
| COG0029 | 518 | NadB Aspartate oxidase [Coenzyme metabolism] | 99.16 | |
| TIGR00551 | 488 | nadB L-aspartate oxidase. L-aspartate oxidase is t | 99.12 | |
| PRK13800 | 897 | putative oxidoreductase/HEAT repeat-containing pro | 99.12 | |
| PRK04176 | 257 | ribulose-1,5-biphosphate synthetase; Provisional | 99.1 | |
| TIGR00292 | 254 | thiazole biosynthesis enzyme. This enzyme is invol | 99.06 | |
| PRK08275 | 554 | putative oxidoreductase; Provisional | 99.06 | |
| COG3075 | 421 | GlpB Anaerobic glycerol-3-phosphate dehydrogenase | 99.06 | |
| PRK07804 | 541 | L-aspartate oxidase; Provisional | 99.02 | |
| PRK06854 | 608 | adenylylsulfate reductase subunit alpha; Validated | 99.01 | |
| PRK06263 | 543 | sdhA succinate dehydrogenase flavoprotein subunit; | 99.01 | |
| PRK09077 | 536 | L-aspartate oxidase; Provisional | 99.0 | |
| PRK09231 | 582 | fumarate reductase flavoprotein subunit; Validated | 98.99 | |
| PF01266 | 358 | DAO: FAD dependent oxidoreductase; InterPro: IPR00 | 98.97 | |
| PRK07395 | 553 | L-aspartate oxidase; Provisional | 98.97 | |
| COG0579 | 429 | Predicted dehydrogenase [General function predicti | 98.95 | |
| PRK08071 | 510 | L-aspartate oxidase; Provisional | 98.95 | |
| TIGR00136 | 617 | gidA glucose-inhibited division protein A. GidA, t | 98.93 | |
| PRK08641 | 589 | sdhA succinate dehydrogenase flavoprotein subunit; | 98.93 | |
| TIGR01176 | 580 | fum_red_Fp fumarate reductase, flavoprotein subuni | 98.92 | |
| PRK11728 | 393 | hydroxyglutarate oxidase; Provisional | 98.91 | |
| PRK06452 | 566 | sdhA succinate dehydrogenase flavoprotein subunit; | 98.91 | |
| TIGR01377 | 380 | soxA_mon sarcosine oxidase, monomeric form. Sarcos | 98.91 | |
| PRK06069 | 577 | sdhA succinate dehydrogenase flavoprotein subunit; | 98.91 | |
| COG1635 | 262 | THI4 Ribulose 1,5-bisphosphate synthetase, convert | 98.91 | |
| PRK09897 | 534 | hypothetical protein; Provisional | 98.91 | |
| TIGR01812 | 566 | sdhA_frdA_Gneg succinate dehydrogenase or fumarate | 98.91 | |
| PLN02815 | 594 | L-aspartate oxidase | 98.9 | |
| PRK12845 | 564 | 3-ketosteroid-delta-1-dehydrogenase; Reviewed | 98.89 | |
| PRK12409 | 410 | D-amino acid dehydrogenase small subunit; Provisio | 98.89 | |
| TIGR03329 | 460 | Phn_aa_oxid putative aminophosphonate oxidoreducta | 98.88 | |
| PRK11259 | 376 | solA N-methyltryptophan oxidase; Provisional | 98.88 | |
| PRK05192 | 618 | tRNA uridine 5-carboxymethylaminomethyl modificati | 98.85 | |
| TIGR02061 | 614 | aprA adenosine phosphosulphate reductase, alpha su | 98.85 | |
| PRK06847 | 375 | hypothetical protein; Provisional | 98.85 | |
| PRK07512 | 513 | L-aspartate oxidase; Provisional | 98.83 | |
| PRK08626 | 657 | fumarate reductase flavoprotein subunit; Provision | 98.83 | |
| PRK08773 | 392 | 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy | 98.8 | |
| TIGR01811 | 603 | sdhA_Bsu succinate dehydrogenase or fumarate reduc | 98.79 | |
| PRK10157 | 428 | putative oxidoreductase FixC; Provisional | 98.79 | |
| PRK00711 | 416 | D-amino acid dehydrogenase small subunit; Validate | 98.79 | |
| TIGR01292 | 300 | TRX_reduct thioredoxin-disulfide reductase. This m | 98.78 | |
| TIGR00275 | 400 | flavoprotein, HI0933 family. The model when search | 98.78 | |
| PRK08163 | 396 | salicylate hydroxylase; Provisional | 98.77 | |
| COG0644 | 396 | FixC Dehydrogenases (flavoproteins) [Energy produc | 98.75 | |
| PF00890 | 417 | FAD_binding_2: FAD binding domain of the Pfam fami | 98.72 | |
| PTZ00383 | 497 | malate:quinone oxidoreductase; Provisional | 98.72 | |
| PRK08274 | 466 | tricarballylate dehydrogenase; Validated | 98.71 | |
| PRK12844 | 557 | 3-ketosteroid-delta-1-dehydrogenase; Reviewed | 98.71 | |
| COG0654 | 387 | UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and | 98.71 | |
| PLN02661 | 357 | Putative thiazole synthesis | 98.69 | |
| COG2509 | 486 | Uncharacterized FAD-dependent dehydrogenases [Gene | 98.68 | |
| PRK05714 | 405 | 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy | 98.68 | |
| PRK09126 | 392 | hypothetical protein; Provisional | 98.68 | |
| PF01494 | 356 | FAD_binding_3: FAD binding domain; InterPro: IPR00 | 98.67 | |
| PRK07608 | 388 | ubiquinone biosynthesis hydroxylase family protein | 98.67 | |
| PRK06481 | 506 | fumarate reductase flavoprotein subunit; Validated | 98.66 | |
| PRK07364 | 415 | 2-octaprenyl-6-methoxyphenyl hydroxylase; Validate | 98.66 | |
| TIGR01373 | 407 | soxB sarcosine oxidase, beta subunit family, heter | 98.65 | |
| PRK08020 | 391 | ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquin | 98.65 | |
| TIGR03364 | 365 | HpnW_proposed FAD dependent oxidoreductase TIGR033 | 98.65 | |
| PRK07588 | 391 | hypothetical protein; Provisional | 98.64 | |
| PRK08013 | 400 | oxidoreductase; Provisional | 98.64 | |
| TIGR02028 | 398 | ChlP geranylgeranyl reductase. This model represen | 98.64 | |
| PRK13977 | 576 | myosin-cross-reactive antigen; Provisional | 98.64 | |
| COG1053 | 562 | SdhA Succinate dehydrogenase/fumarate reductase, f | 98.63 | |
| PRK12839 | 572 | hypothetical protein; Provisional | 98.63 | |
| PRK10015 | 429 | oxidoreductase; Provisional | 98.63 | |
| PRK06834 | 488 | hypothetical protein; Provisional | 98.62 | |
| PRK06184 | 502 | hypothetical protein; Provisional | 98.62 | |
| PRK07333 | 403 | 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio | 98.62 | |
| PRK08849 | 384 | 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy | 98.62 | |
| PRK01747 | 662 | mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans | 98.6 | |
| PRK08850 | 405 | 2-octaprenyl-6-methoxyphenol hydroxylase; Validate | 98.59 | |
| PRK07121 | 492 | hypothetical protein; Validated | 98.59 | |
| PRK06175 | 433 | L-aspartate oxidase; Provisional | 98.59 | |
| PLN02463 | 447 | lycopene beta cyclase | 98.59 | |
| TIGR02032 | 295 | GG-red-SF geranylgeranyl reductase family. This mo | 98.58 | |
| PRK07494 | 388 | 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio | 98.57 | |
| TIGR02734 | 502 | crtI_fam phytoene desaturase. Phytoene is converte | 98.56 | |
| PRK13369 | 502 | glycerol-3-phosphate dehydrogenase; Provisional | 98.56 | |
| PRK07190 | 487 | hypothetical protein; Provisional | 98.55 | |
| PRK05335 | 436 | tRNA (uracil-5-)-methyltransferase Gid; Reviewed | 98.55 | |
| PRK07573 | 640 | sdhA succinate dehydrogenase flavoprotein subunit; | 98.55 | |
| TIGR01790 | 388 | carotene-cycl lycopene cyclase family protein. Thi | 98.54 | |
| TIGR01984 | 382 | UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. T | 98.54 | |
| TIGR01320 | 483 | mal_quin_oxido malate:quinone-oxidoreductase. This | 98.54 | |
| TIGR01988 | 385 | Ubi-OHases Ubiquinone biosynthesis hydroxylase, Ub | 98.53 | |
| TIGR02730 | 493 | carot_isom carotene isomerase. Members of this fam | 98.53 | |
| PRK07045 | 388 | putative monooxygenase; Reviewed | 98.52 | |
| PLN02697 | 529 | lycopene epsilon cyclase | 98.52 | |
| PRK08244 | 493 | hypothetical protein; Provisional | 98.51 | |
| PRK08243 | 392 | 4-hydroxybenzoate 3-monooxygenase; Validated | 98.5 | |
| PRK05257 | 494 | malate:quinone oxidoreductase; Validated | 98.5 | |
| PF01946 | 230 | Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K. | 98.5 | |
| PRK05868 | 372 | hypothetical protein; Validated | 98.5 | |
| PRK08132 | 547 | FAD-dependent oxidoreductase; Provisional | 98.5 | |
| PRK11101 | 546 | glpA sn-glycerol-3-phosphate dehydrogenase subunit | 98.5 | |
| PRK06185 | 407 | hypothetical protein; Provisional | 98.5 | |
| PRK05732 | 395 | 2-octaprenyl-6-methoxyphenyl hydroxylase; Validate | 98.49 | |
| PRK12834 | 549 | putative FAD-binding dehydrogenase; Reviewed | 98.48 | |
| PRK12266 | 508 | glpD glycerol-3-phosphate dehydrogenase; Reviewed | 98.48 | |
| PTZ00139 | 617 | Succinate dehydrogenase [ubiquinone] flavoprotein | 98.48 | |
| PTZ00363 | 443 | rab-GDP dissociation inhibitor; Provisional | 98.48 | |
| COG0665 | 387 | DadA Glycine/D-amino acid oxidases (deaminating) [ | 98.47 | |
| PRK07233 | 434 | hypothetical protein; Provisional | 98.46 | |
| PF01134 | 392 | GIDA: Glucose inhibited division protein A; InterP | 98.44 | |
| PLN00093 | 450 | geranylgeranyl diphosphate reductase; Provisional | 98.43 | |
| PF12831 | 428 | FAD_oxidored: FAD dependent oxidoreductase; PDB: 3 | 98.43 | |
| TIGR01813 | 439 | flavo_cyto_c flavocytochrome c. This model describ | 98.42 | |
| PF13738 | 203 | Pyr_redox_3: Pyridine nucleotide-disulphide oxidor | 98.42 | |
| KOG2820 | 399 | consensus FAD-dependent oxidoreductase [General fu | 98.42 | |
| PF13454 | 156 | NAD_binding_9: FAD-NAD(P)-binding | 98.41 | |
| PRK13339 | 497 | malate:quinone oxidoreductase; Reviewed | 98.41 | |
| PRK09078 | 598 | sdhA succinate dehydrogenase flavoprotein subunit; | 98.4 | |
| PRK11445 | 351 | putative oxidoreductase; Provisional | 98.39 | |
| PRK06183 | 538 | mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Va | 98.39 | |
| COG1232 | 444 | HemY Protoporphyrinogen oxidase [Coenzyme metaboli | 98.39 | |
| PRK06617 | 374 | 2-octaprenyl-6-methoxyphenyl hydroxylase; Validate | 98.39 | |
| TIGR02023 | 388 | BchP-ChlP geranylgeranyl reductase. This model rep | 98.38 | |
| PRK07803 | 626 | sdhA succinate dehydrogenase flavoprotein subunit; | 98.38 | |
| PRK15317 | 517 | alkyl hydroperoxide reductase subunit F; Provision | 98.37 | |
| PRK08958 | 588 | sdhA succinate dehydrogenase flavoprotein subunit; | 98.37 | |
| TIGR03140 | 515 | AhpF alkyl hydroperoxide reductase, F subunit. Thi | 98.37 | |
| PRK05945 | 575 | sdhA succinate dehydrogenase flavoprotein subunit; | 98.37 | |
| PF13450 | 68 | NAD_binding_8: NAD(P)-binding Rossmann-like domain | 98.36 | |
| PRK07057 | 591 | sdhA succinate dehydrogenase flavoprotein subunit; | 98.36 | |
| PRK12835 | 584 | 3-ketosteroid-delta-1-dehydrogenase; Reviewed | 98.36 | |
| PRK12843 | 578 | putative FAD-binding dehydrogenase; Reviewed | 98.35 | |
| COG1231 | 450 | Monoamine oxidase [Amino acid transport and metabo | 98.35 | |
| PRK08205 | 583 | sdhA succinate dehydrogenase flavoprotein subunit; | 98.34 | |
| PRK06126 | 545 | hypothetical protein; Provisional | 98.34 | |
| KOG2415 | 621 | consensus Electron transfer flavoprotein ubiquinon | 98.33 | |
| PLN00128 | 635 | Succinate dehydrogenase [ubiquinone] flavoprotein | 98.33 | |
| PLN02464 | 627 | glycerol-3-phosphate dehydrogenase | 98.32 | |
| PLN02172 | 461 | flavin-containing monooxygenase FMO GS-OX | 98.31 | |
| PRK09754 | 396 | phenylpropionate dioxygenase ferredoxin reductase | 98.29 | |
| PRK06475 | 400 | salicylate hydroxylase; Provisional | 98.27 | |
| TIGR01989 | 437 | COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. T | 98.27 | |
| PF05834 | 374 | Lycopene_cycl: Lycopene cyclase protein; InterPro: | 98.26 | |
| PRK09564 | 444 | coenzyme A disulfide reductase; Reviewed | 98.25 | |
| TIGR02360 | 390 | pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. | 98.25 | |
| PRK06996 | 398 | hypothetical protein; Provisional | 98.24 | |
| PRK07236 | 386 | hypothetical protein; Provisional | 98.23 | |
| PRK07538 | 413 | hypothetical protein; Provisional | 98.21 | |
| PLN02612 | 567 | phytoene desaturase | 98.21 | |
| PRK07251 | 438 | pyridine nucleotide-disulfide oxidoreductase; Prov | 98.2 | |
| PTZ00306 | 1167 | NADH-dependent fumarate reductase; Provisional | 98.2 | |
| COG0578 | 532 | GlpA Glycerol-3-phosphate dehydrogenase [Energy pr | 98.17 | |
| TIGR01789 | 370 | lycopene_cycl lycopene cyclase. This model represe | 98.16 | |
| PF04820 | 454 | Trp_halogenase: Tryptophan halogenase; InterPro: I | 98.15 | |
| COG1252 | 405 | Ndh NADH dehydrogenase, FAD-containing subunit [En | 98.12 | |
| KOG2844 | 856 | consensus Dimethylglycine dehydrogenase precursor | 98.1 | |
| TIGR01350 | 461 | lipoamide_DH dihydrolipoamide dehydrogenase. The m | 98.1 | |
| TIGR03169 | 364 | Nterm_to_SelD pyridine nucleotide-disulfide oxidor | 98.1 | |
| PTZ00318 | 424 | NADH dehydrogenase-like protein; Provisional | 98.09 | |
| COG1233 | 487 | Phytoene dehydrogenase and related proteins [Secon | 98.09 | |
| PF07992 | 201 | Pyr_redox_2: Pyridine nucleotide-disulphide oxidor | 98.08 | |
| PRK14989 | 847 | nitrite reductase subunit NirD; Provisional | 98.08 | |
| PRK07208 | 479 | hypothetical protein; Provisional | 98.06 | |
| TIGR02032 | 295 | GG-red-SF geranylgeranyl reductase family. This mo | 98.06 | |
| PRK13512 | 438 | coenzyme A disulfide reductase; Provisional | 98.06 | |
| TIGR02485 | 432 | CobZ_N-term precorrin 3B synthase CobZ. CobZ is es | 98.05 | |
| PLN02927 | 668 | antheraxanthin epoxidase/zeaxanthin epoxidase | 98.04 | |
| PRK12770 | 352 | putative glutamate synthase subunit beta; Provisio | 98.04 | |
| TIGR02374 | 785 | nitri_red_nirB nitrite reductase [NAD(P)H], large | 98.04 | |
| PF06039 | 488 | Mqo: Malate:quinone oxidoreductase (Mqo); InterPro | 98.02 | |
| PF01134 | 392 | GIDA: Glucose inhibited division protein A; InterP | 98.0 | |
| PRK12779 | 944 | putative bifunctional glutamate synthase subunit b | 98.0 | |
| KOG0029 | 501 | consensus Amine oxidase [Secondary metabolites bio | 97.99 | |
| PRK07236 | 386 | hypothetical protein; Provisional | 97.98 | |
| COG0445 | 621 | GidA Flavin-dependent tRNA uridine 5-carboxymethyl | 97.97 | |
| PRK10262 | 321 | thioredoxin reductase; Provisional | 97.97 | |
| PLN02463 | 447 | lycopene beta cyclase | 97.97 | |
| TIGR00031 | 377 | UDP-GALP_mutase UDP-galactopyranose mutase. The ge | 97.96 | |
| TIGR03143 | 555 | AhpF_homolog putative alkyl hydroperoxide reductas | 97.95 | |
| PRK04965 | 377 | NADH:flavorubredoxin oxidoreductase; Provisional | 97.93 | |
| TIGR01316 | 449 | gltA glutamate synthase (NADPH), homotetrameric. T | 97.91 | |
| PRK09853 | 1019 | putative selenate reductase subunit YgfK; Provisio | 97.91 | |
| PRK11749 | 457 | dihydropyrimidine dehydrogenase subunit A; Provisi | 97.9 | |
| KOG2665 | 453 | consensus Predicted FAD-dependent oxidoreductase [ | 97.87 | |
| COG3380 | 331 | Predicted NAD/FAD-dependent oxidoreductase [Genera | 97.86 | |
| COG0492 | 305 | TrxB Thioredoxin reductase [Posttranslational modi | 97.84 | |
| TIGR01424 | 446 | gluta_reduc_2 glutathione-disulfide reductase, pla | 97.83 | |
| TIGR01318 | 467 | gltD_gamma_fam glutamate synthase small subunit fa | 97.82 | |
| PF00743 | 531 | FMO-like: Flavin-binding monooxygenase-like; Inter | 97.82 | |
| PLN02576 | 496 | protoporphyrinogen oxidase | 97.81 | |
| PRK06753 | 373 | hypothetical protein; Provisional | 97.8 | |
| PLN02268 | 435 | probable polyamine oxidase | 97.79 | |
| PRK11883 | 451 | protoporphyrinogen oxidase; Reviewed | 97.79 | |
| PRK07845 | 466 | flavoprotein disulfide reductase; Reviewed | 97.78 | |
| TIGR00562 | 462 | proto_IX_ox protoporphyrinogen oxidase. This prote | 97.78 | |
| TIGR02733 | 492 | desat_CrtD C-3',4' desaturase CrtD. Members of thi | 97.76 | |
| PRK12831 | 464 | putative oxidoreductase; Provisional | 97.75 | |
| COG3349 | 485 | Uncharacterized conserved protein [Function unknow | 97.75 | |
| PLN02852 | 491 | ferredoxin-NADP+ reductase | 97.74 | |
| PRK05249 | 461 | soluble pyridine nucleotide transhydrogenase; Prov | 97.74 | |
| KOG0399 | 2142 | consensus Glutamate synthase [Amino acid transport | 97.74 | |
| COG2907 | 447 | Predicted NAD/FAD-binding protein [General functio | 97.73 | |
| PF06100 | 500 | Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross | 97.72 | |
| COG0446 | 415 | HcaD Uncharacterized NAD(FAD)-dependent dehydrogen | 97.72 | |
| COG0562 | 374 | Glf UDP-galactopyranose mutase [Cell envelope biog | 97.71 | |
| PLN02568 | 539 | polyamine oxidase | 97.71 | |
| PRK08010 | 441 | pyridine nucleotide-disulfide oxidoreductase; Prov | 97.7 | |
| KOG4254 | 561 | consensus Phytoene desaturase [Coenzyme transport | 97.7 | |
| KOG1399 | 448 | consensus Flavin-containing monooxygenase [Seconda | 97.69 | |
| PRK06467 | 471 | dihydrolipoamide dehydrogenase; Reviewed | 97.68 | |
| PRK05976 | 472 | dihydrolipoamide dehydrogenase; Validated | 97.68 | |
| COG2072 | 443 | TrkA Predicted flavoprotein involved in K+ transpo | 97.66 | |
| TIGR01317 | 485 | GOGAT_sm_gam glutamate synthases, NADH/NADPH, smal | 97.65 | |
| PLN02697 | 529 | lycopene epsilon cyclase | 97.65 | |
| KOG2404 | 477 | consensus Fumarate reductase, flavoprotein subunit | 97.64 | |
| PRK06327 | 475 | dihydrolipoamide dehydrogenase; Validated | 97.63 | |
| TIGR01790 | 388 | carotene-cycl lycopene cyclase family protein. Thi | 97.62 | |
| PRK12778 | 752 | putative bifunctional 2-polyprenylphenol hydroxyla | 97.61 | |
| PRK05192 | 618 | tRNA uridine 5-carboxymethylaminomethyl modificati | 97.6 | |
| PRK08255 | 765 | salicylyl-CoA 5-hydroxylase; Reviewed | 97.6 | |
| PRK12837 | 513 | 3-ketosteroid-delta-1-dehydrogenase; Provisional | 97.6 | |
| PRK12814 | 652 | putative NADPH-dependent glutamate synthase small | 97.59 | |
| PRK12416 | 463 | protoporphyrinogen oxidase; Provisional | 97.59 | |
| PRK12775 | 1006 | putative trifunctional 2-polyprenylphenol hydroxyl | 97.58 | |
| TIGR03385 | 427 | CoA_CoA_reduc CoA-disulfide reductase. Members of | 97.58 | |
| TIGR02731 | 453 | phytoene_desat phytoene desaturase. Plants and cya | 97.56 | |
| PRK06912 | 458 | acoL dihydrolipoamide dehydrogenase; Validated | 97.56 | |
| PRK06116 | 450 | glutathione reductase; Validated | 97.56 | |
| TIGR03315 | 1012 | Se_ygfK putative selenate reductase, YgfK subunit. | 97.55 | |
| PRK12810 | 471 | gltD glutamate synthase subunit beta; Reviewed | 97.54 | |
| PRK06416 | 462 | dihydrolipoamide dehydrogenase; Reviewed | 97.54 | |
| TIGR03219 | 414 | salicylate_mono salicylate 1-monooxygenase. Member | 97.54 | |
| PRK12809 | 639 | putative oxidoreductase Fe-S binding subunit; Revi | 97.53 | |
| PRK09897 | 534 | hypothetical protein; Provisional | 97.52 | |
| KOG1335 | 506 | consensus Dihydrolipoamide dehydrogenase [Energy p | 97.51 | |
| PLN02676 | 487 | polyamine oxidase | 97.5 | |
| COG0493 | 457 | GltD NADPH-dependent glutamate synthase beta chain | 97.49 | |
| PRK14694 | 468 | putative mercuric reductase; Provisional | 97.49 | |
| PLN02985 | 514 | squalene monooxygenase | 97.47 | |
| COG1249 | 454 | Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, | 97.47 | |
| PLN02529 | 738 | lysine-specific histone demethylase 1 | 97.47 | |
| PRK06370 | 463 | mercuric reductase; Validated | 97.47 | |
| PRK12769 | 654 | putative oxidoreductase Fe-S binding subunit; Revi | 97.45 | |
| PTZ00188 | 506 | adrenodoxin reductase; Provisional | 97.45 | |
| KOG1336 | 478 | consensus Monodehydroascorbate/ferredoxin reductas | 97.44 | |
| PRK08294 | 634 | phenol 2-monooxygenase; Provisional | 97.44 | |
| PF00070 | 80 | Pyr_redox: Pyridine nucleotide-disulphide oxidored | 97.43 | |
| TIGR02053 | 463 | MerA mercuric reductase. This model represents the | 97.39 | |
| PRK06753 | 373 | hypothetical protein; Provisional | 97.39 | |
| PRK01438 | 480 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 97.38 | |
| PF05834 | 374 | Lycopene_cycl: Lycopene cyclase protein; InterPro: | 97.37 | |
| KOG0685 | 498 | consensus Flavin-containing amine oxidase [Coenzym | 97.35 | |
| PTZ00367 | 567 | squalene epoxidase; Provisional | 97.34 | |
| TIGR02732 | 474 | zeta_caro_desat carotene 7,8-desaturase. Carotene | 97.32 | |
| PRK06115 | 466 | dihydrolipoamide dehydrogenase; Reviewed | 97.32 | |
| PLN02507 | 499 | glutathione reductase | 97.32 | |
| TIGR01421 | 450 | gluta_reduc_1 glutathione-disulfide reductase, ani | 97.3 | |
| TIGR01789 | 370 | lycopene_cycl lycopene cyclase. This model represe | 97.3 | |
| TIGR02023 | 388 | BchP-ChlP geranylgeranyl reductase. This model rep | 97.3 | |
| TIGR00136 | 617 | gidA glucose-inhibited division protein A. GidA, t | 97.28 | |
| PLN02328 | 808 | lysine-specific histone demethylase 1 homolog | 97.27 | |
| KOG1298 | 509 | consensus Squalene monooxygenase [Lipid transport | 97.26 | |
| PF12831 | 428 | FAD_oxidored: FAD dependent oxidoreductase; PDB: 3 | 97.25 | |
| PRK14727 | 479 | putative mercuric reductase; Provisional | 97.25 | |
| PRK07818 | 466 | dihydrolipoamide dehydrogenase; Reviewed | 97.25 | |
| KOG2311 | 679 | consensus NAD/FAD-utilizing protein possibly invol | 97.24 | |
| PF00732 | 296 | GMC_oxred_N: GMC oxidoreductase; InterPro: IPR0001 | 97.24 | |
| PRK12771 | 564 | putative glutamate synthase (NADPH) small subunit; | 97.23 | |
| PRK13984 | 604 | putative oxidoreductase; Provisional | 97.21 | |
| PF13454 | 156 | NAD_binding_9: FAD-NAD(P)-binding | 97.21 | |
| PRK07846 | 451 | mycothione reductase; Reviewed | 97.19 | |
| KOG2852 | 380 | consensus Possible oxidoreductase [General functio | 97.18 | |
| PRK13748 | 561 | putative mercuric reductase; Provisional | 97.16 | |
| TIGR02462 | 544 | pyranose_ox pyranose oxidase. Pyranose oxidase (al | 97.16 | |
| PTZ00052 | 499 | thioredoxin reductase; Provisional | 97.15 | |
| PTZ00058 | 561 | glutathione reductase; Provisional | 97.14 | |
| PLN02487 | 569 | zeta-carotene desaturase | 97.13 | |
| TIGR03219 | 414 | salicylate_mono salicylate 1-monooxygenase. Member | 97.1 | |
| TIGR03452 | 452 | mycothione_red mycothione reductase. Mycothiol, a | 97.09 | |
| PRK02106 | 560 | choline dehydrogenase; Validated | 97.08 | |
| TIGR01438 | 484 | TGR thioredoxin and glutathione reductase selenopr | 97.07 | |
| TIGR01423 | 486 | trypano_reduc trypanothione-disulfide reductase. T | 97.06 | |
| TIGR01372 | 985 | soxA sarcosine oxidase, alpha subunit family, hete | 97.03 | |
| PRK06292 | 460 | dihydrolipoamide dehydrogenase; Validated | 97.02 | |
| TIGR02028 | 398 | ChlP geranylgeranyl reductase. This model represen | 97.01 | |
| TIGR00137 | 433 | gid_trmFO tRNA:m(5)U-54 methyltransferase. This mo | 97.0 | |
| PLN03000 | 881 | amine oxidase | 96.96 | |
| PLN02976 | 1713 | amine oxidase | 96.94 | |
| COG3573 | 552 | Predicted oxidoreductase [General function predict | 96.91 | |
| KOG0404 | 322 | consensus Thioredoxin reductase [Posttranslational | 96.9 | |
| KOG2853 | 509 | consensus Possible oxidoreductase [General functio | 96.89 | |
| PLN02546 | 558 | glutathione reductase | 96.87 | |
| PF01946 | 230 | Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K. | 96.83 | |
| KOG2614 | 420 | consensus Kynurenine 3-monooxygenase and related f | 96.83 | |
| PRK06567 | 1028 | putative bifunctional glutamate synthase subunit b | 96.81 | |
| KOG2495 | 491 | consensus NADH-dehydrogenase (ubiquinone) [Energy | 96.77 | |
| PLN00093 | 450 | geranylgeranyl diphosphate reductase; Provisional | 96.77 | |
| COG1251 | 793 | NirB NAD(P)H-nitrite reductase [Energy production | 96.75 | |
| COG3380 | 331 | Predicted NAD/FAD-dependent oxidoreductase [Genera | 96.75 | |
| KOG2960 | 328 | consensus Protein involved in thiamine biosynthesi | 96.75 | |
| COG2303 | 542 | BetA Choline dehydrogenase and related flavoprotei | 96.68 | |
| TIGR00137 | 433 | gid_trmFO tRNA:m(5)U-54 methyltransferase. This mo | 96.64 | |
| PTZ00153 | 659 | lipoamide dehydrogenase; Provisional | 96.64 | |
| COG0445 | 621 | GidA Flavin-dependent tRNA uridine 5-carboxymethyl | 96.59 | |
| PRK01438 | 480 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 96.59 | |
| KOG1276 | 491 | consensus Protoporphyrinogen oxidase [Coenzyme tra | 96.58 | |
| PRK08401 | 466 | L-aspartate oxidase; Provisional | 96.57 | |
| COG1148 | 622 | HdrA Heterodisulfide reductase, subunit A and rela | 96.33 | |
| PLN02985 | 514 | squalene monooxygenase | 96.26 | |
| KOG2311 | 679 | consensus NAD/FAD-utilizing protein possibly invol | 96.15 | |
| PRK08294 | 634 | phenol 2-monooxygenase; Provisional | 96.15 | |
| TIGR01812 | 566 | sdhA_frdA_Gneg succinate dehydrogenase or fumarate | 96.15 | |
| TIGR01810 | 532 | betA choline dehydrogenase. This enzyme is a membe | 96.07 | |
| PRK06854 | 608 | adenylylsulfate reductase subunit alpha; Validated | 95.98 | |
| PLN02785 | 587 | Protein HOTHEAD | 95.97 | |
| KOG2614 | 420 | consensus Kynurenine 3-monooxygenase and related f | 95.94 | |
| TIGR03862 | 376 | flavo_PP4765 uncharacterized flavoprotein, PP_4765 | 95.92 | |
| COG3634 | 520 | AhpF Alkyl hydroperoxide reductase, large subunit | 95.88 | |
| KOG0042 | 680 | consensus Glycerol-3-phosphate dehydrogenase [Ener | 95.88 | |
| TIGR00551 | 488 | nadB L-aspartate oxidase. L-aspartate oxidase is t | 95.84 | |
| KOG3855 | 481 | consensus Monooxygenase involved in coenzyme Q (ub | 95.81 | |
| PRK08275 | 554 | putative oxidoreductase; Provisional | 95.78 | |
| PF13450 | 68 | NAD_binding_8: NAD(P)-binding Rossmann-like domain | 95.72 | |
| PRK06263 | 543 | sdhA succinate dehydrogenase flavoprotein subunit; | 95.61 | |
| PRK07804 | 541 | L-aspartate oxidase; Provisional | 95.58 | |
| PRK14106 | 450 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 95.55 | |
| PRK06452 | 566 | sdhA succinate dehydrogenase flavoprotein subunit; | 95.53 | |
| COG4529 | 474 | Uncharacterized protein conserved in bacteria [Fun | 95.44 | |
| KOG1238 | 623 | consensus Glucose dehydrogenase/choline dehydrogen | 95.36 | |
| PRK08255 | 765 | salicylyl-CoA 5-hydroxylase; Reviewed | 95.34 | |
| PTZ00367 | 567 | squalene epoxidase; Provisional | 95.22 | |
| TIGR01811 | 603 | sdhA_Bsu succinate dehydrogenase or fumarate reduc | 95.18 | |
| PF00996 | 438 | GDI: GDP dissociation inhibitor; InterPro: IPR0182 | 95.02 | |
| PF13434 | 341 | K_oxygenase: L-lysine 6-monooxygenase (NADPH-requi | 95.01 | |
| PF02558 | 151 | ApbA: Ketopantoate reductase PanE/ApbA; InterPro: | 95.01 | |
| PF01494 | 356 | FAD_binding_3: FAD binding domain; InterPro: IPR00 | 94.91 | |
| KOG0405 | 478 | consensus Pyridine nucleotide-disulphide oxidoredu | 94.87 | |
| COG1206 | 439 | Gid NAD(FAD)-utilizing enzyme possibly involved in | 94.8 | |
| TIGR02352 | 337 | thiamin_ThiO glycine oxidase ThiO. This family con | 94.66 | |
| KOG1346 | 659 | consensus Programmed cell death 8 (apoptosis-induc | 94.65 | |
| PRK08626 | 657 | fumarate reductase flavoprotein subunit; Provision | 94.61 | |
| PRK06069 | 577 | sdhA succinate dehydrogenase flavoprotein subunit; | 94.58 | |
| KOG2852 | 380 | consensus Possible oxidoreductase [General functio | 94.56 | |
| PRK14106 | 450 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 94.49 | |
| PLN02815 | 594 | L-aspartate oxidase | 94.43 | |
| PRK06475 | 400 | salicylate hydroxylase; Provisional | 94.34 | |
| PRK05868 | 372 | hypothetical protein; Validated | 94.33 | |
| TIGR01470 | 205 | cysG_Nterm siroheme synthase, N-terminal domain. T | 94.26 | |
| PRK08071 | 510 | L-aspartate oxidase; Provisional | 94.21 | |
| PRK05335 | 436 | tRNA (uracil-5-)-methyltransferase Gid; Reviewed | 94.19 | |
| PRK06184 | 502 | hypothetical protein; Provisional | 94.12 | |
| COG0654 | 387 | UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and | 94.11 | |
| PRK06847 | 375 | hypothetical protein; Provisional | 94.1 | |
| PRK08163 | 396 | salicylate hydroxylase; Provisional | 94.05 | |
| PF01210 | 157 | NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate | 93.94 | |
| TIGR03197 | 381 | MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouri | 93.93 | |
| COG1635 | 262 | THI4 Ribulose 1,5-bisphosphate synthetase, convert | 93.91 | |
| KOG3851 | 446 | consensus Sulfide:quinone oxidoreductase/flavo-bin | 93.86 | |
| KOG2755 | 334 | consensus Oxidoreductase [General function predict | 93.83 | |
| PRK07395 | 553 | L-aspartate oxidase; Provisional | 93.83 | |
| PRK08244 | 493 | hypothetical protein; Provisional | 93.81 | |
| PRK07364 | 415 | 2-octaprenyl-6-methoxyphenyl hydroxylase; Validate | 93.66 | |
| KOG3923 | 342 | consensus D-aspartate oxidase [Amino acid transpor | 93.65 | |
| KOG2853 | 509 | consensus Possible oxidoreductase [General functio | 93.42 | |
| PRK07494 | 388 | 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio | 93.32 | |
| KOG1298 | 509 | consensus Squalene monooxygenase [Lipid transport | 93.32 | |
| TIGR01176 | 580 | fum_red_Fp fumarate reductase, flavoprotein subuni | 93.31 | |
| PRK06718 | 202 | precorrin-2 dehydrogenase; Reviewed | 93.28 | |
| PRK09231 | 582 | fumarate reductase flavoprotein subunit; Validated | 93.23 | |
| PRK08641 | 589 | sdhA succinate dehydrogenase flavoprotein subunit; | 93.22 | |
| PRK12837 | 513 | 3-ketosteroid-delta-1-dehydrogenase; Provisional | 93.14 | |
| PRK07538 | 413 | hypothetical protein; Provisional | 93.13 | |
| PRK06126 | 545 | hypothetical protein; Provisional | 93.13 | |
| PF02737 | 180 | 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind | 92.89 | |
| PF03721 | 185 | UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen | 92.89 | |
| COG1893 | 307 | ApbA Ketopantoate reductase [Coenzyme metabolism] | 92.89 | |
| KOG0029 | 501 | consensus Amine oxidase [Secondary metabolites bio | 92.85 | |
| PRK09126 | 392 | hypothetical protein; Provisional | 92.8 | |
| TIGR01984 | 382 | UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. T | 92.75 | |
| PRK06185 | 407 | hypothetical protein; Provisional | 92.71 | |
| PRK07045 | 388 | putative monooxygenase; Reviewed | 92.71 | |
| PRK05562 | 223 | precorrin-2 dehydrogenase; Provisional | 92.7 | |
| COG0029 | 518 | NadB Aspartate oxidase [Coenzyme metabolism] | 92.65 | |
| PRK05708 | 305 | 2-dehydropantoate 2-reductase; Provisional | 92.51 | |
| COG0569 | 225 | TrkA K+ transport systems, NAD-binding component [ | 92.43 | |
| PF13241 | 103 | NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_ | 92.39 | |
| PRK05714 | 405 | 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy | 92.35 | |
| PRK07588 | 391 | hypothetical protein; Provisional | 92.34 | |
| PF01593 | 450 | Amino_oxidase: Flavin containing amine oxidoreduct | 92.3 | |
| PF02737 | 180 | 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind | 92.15 | |
| PRK09077 | 536 | L-aspartate oxidase; Provisional | 92.06 | |
| TIGR01470 | 205 | cysG_Nterm siroheme synthase, N-terminal domain. T | 92.0 | |
| PF01262 | 168 | AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal | 91.98 | |
| COG0686 | 371 | Ald Alanine dehydrogenase [Amino acid transport an | 91.96 | |
| PRK02705 | 459 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 91.91 | |
| PRK06719 | 157 | precorrin-2 dehydrogenase; Validated | 91.9 | |
| PRK11883 | 451 | protoporphyrinogen oxidase; Reviewed | 91.86 | |
| PRK04176 | 257 | ribulose-1,5-biphosphate synthetase; Provisional | 91.85 | |
| PRK08013 | 400 | oxidoreductase; Provisional | 91.83 | |
| PRK07190 | 487 | hypothetical protein; Provisional | 91.82 | |
| TIGR01988 | 385 | Ubi-OHases Ubiquinone biosynthesis hydroxylase, Ub | 91.81 |
| >COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-85 Score=668.67 Aligned_cols=443 Identities=36% Similarity=0.574 Sum_probs=416.0
Q ss_pred CCCccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCC-CCCCeeccCCCcchHHHHHhhhhhhHhhhcc-CC
Q 008860 70 HYDFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTG-GVGGTCVLRGCVPKKLLVYASKFSHEFDESN-GF 147 (551)
Q Consensus 70 ~~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~-~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~-~~ 147 (551)
+.+||+||||+||||+.||.++++.|.+|+||| +. .+||+|+|+||+|+|.|++.++..+.+.+.. .|
T Consensus 2 ~~~yDvvVIG~GpaG~~aA~raa~~G~kvalvE----------~~~~lGGtCln~GCIPsK~Ll~~a~~~~~~~~~~~~~ 71 (454)
T COG1249 2 MKEYDVVVIGAGPAGYVAAIRAAQLGLKVALVE----------KGERLGGTCLNVGCIPSKALLHAAEVIEEARHAAKEY 71 (454)
T ss_pred CccccEEEECCCHHHHHHHHHHHhCCCCEEEEe----------ecCCcCceEEeeCccccHHHHHHHHHHHHHhhccccc
Confidence 457999999999999999999999999999999 55 7999999999999999999999998888776 68
Q ss_pred CcccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEeEEEEecCCEEEEcC---EEEEeCeEEEcCCCCCCCC
Q 008860 148 GWKYGTEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIEGRGKIVDPHTVDVDG---KLYSARHILISVGGRPFIP 224 (551)
Q Consensus 148 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~i~~~~v~v~g---~~~~~d~lviAtG~~p~~p 224 (551)
|+..... .+||.+++.+++...+.+......+++..+|+++.|++++++++++.+++ +++.++++|||||++|..|
T Consensus 72 Gi~~~~~-~id~~~~~~~k~~v~~~~~~~~~~l~~~~~V~vi~G~a~f~~~~~v~V~~~~~~~~~a~~iiIATGS~p~~~ 150 (454)
T COG1249 72 GISAEVP-KIDFEKLLARKDKVVRLLTGGVEGLLKKNGVDVIRGEARFVDPHTVEVTGEDKETITADNIIIATGSRPRIP 150 (454)
T ss_pred ceecCCC-CcCHHHHHHHHHHHHHHHhhhHHHHHhhCCCEEEEEEEEECCCCEEEEcCCCceEEEeCEEEEcCCCCCcCC
Confidence 8887654 89999999999997778888888888999999999999999999999965 8999999999999999999
Q ss_pred CCCCCCc--eecchhhhcCCCCCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCCCCCHHHHHHHHHHHHhcCcE
Q 008860 225 DIPGSEY--AIDSDAALDLPSKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRDFVAEQMSLRGIE 302 (551)
Q Consensus 225 ~i~g~~~--~~~~~~~~~~~~~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~ 302 (551)
++++.+. ++++++.+.+.+.|++++|||+|++|+|+|..++++|.+||++++.+++++.+|+++++.+.+.|++.|++
T Consensus 151 ~~~~~~~~~~~~s~~~l~~~~lP~~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~~iLp~~D~ei~~~~~~~l~~~gv~ 230 (454)
T COG1249 151 PGPGIDGARILDSSDALFLLELPKSLVIVGGGYIGLEFASVFAALGSKVTVVERGDRILPGEDPEISKELTKQLEKGGVK 230 (454)
T ss_pred CCCCCCCCeEEechhhcccccCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCCcCCHHHHHHHHHHHHhCCeE
Confidence 9988764 77888877777999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCcccEEEEEcCCceEEEEECCCe--EEEeeEEEEecCcCCCCCCCCccccCeeecCCCCeEeCCCCCCCCCcEEEeC
Q 008860 303 FHTEESPQAILKSTDGSLSVKTNKGT--VDGFSHVMFATGRRPNTKNLGLEKVGVKMTKNGAIEVDEYSGTAVPSIWAVG 380 (551)
Q Consensus 303 i~~~~~v~~i~~~~~~~~~V~~~~G~--~i~~d~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~t~~~~vya~G 380 (551)
+++++.+++++..+++ +.+.+++|+ ++++|.|++|+|++||++.|++++.|++++++|+|.||++++|++|||||+|
T Consensus 231 i~~~~~v~~~~~~~~~-v~v~~~~g~~~~~~ad~vLvAiGR~Pn~~~LgLe~~Gv~~~~rg~I~VD~~~~Tnvp~IyA~G 309 (454)
T COG1249 231 ILLNTKVTAVEKKDDG-VLVTLEDGEGGTIEADAVLVAIGRKPNTDGLGLENAGVELDDRGFIKVDDQMTTNVPGIYAIG 309 (454)
T ss_pred EEccceEEEEEecCCe-EEEEEecCCCCEEEeeEEEEccCCccCCCCCChhhcCceECCCCCEEeCCccccCCCCEEEee
Confidence 9999999999987776 788888776 6999999999999999999999999999999999999988888999999999
Q ss_pred cCCCCCCChHHHHHhHHHHHHHHcCCCCCCCCCCCccEEEecCCceEEeeCCHHHHHhcCCCeEEEEeeccCcccccccC
Q 008860 381 DVTDRINLTPVALMEGGALAKTLFQAEPTKPDYSAVPSAVFSQPPIGQVGLSEEQAIQEYGDIDVFTANFRPLKATLSGL 460 (551)
Q Consensus 381 D~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~~~~~~~~~~~~~vGl~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 460 (551)
||++.+.+++.|.+||++|++||+|......+|..+|+++|++|++++||+||+||++++.++++...+|..+.++....
T Consensus 310 DV~~~~~Lah~A~~eg~iaa~~i~g~~~~~~d~~~iP~~ift~Peia~VGlte~ea~~~g~~~~~~~~~f~~~~ra~~~~ 389 (454)
T COG1249 310 DVIGGPMLAHVAMAEGRIAAENIAGGKRTPIDYRLIPSVVFTDPEIASVGLTEEEAKEAGIDYKVGKFPFAANGRAITMG 389 (454)
T ss_pred ccCCCcccHhHHHHHHHHHHHHHhCCCCCcCcccCCCEEEECCCcceeeeCCHHHHHhcCCceEEEEeecccchhHHhcc
Confidence 99999889999999999999999985556778999999999999999999999999999989999999999999999889
Q ss_pred CCcEEEEEEEECCCCeEEEEEEECCChhHHHHHHHHHHHCCCCHHHHccCcccCCCchHHHHHH
Q 008860 461 PDRIFMKLVLCAKTNKVLGLHMCGEDAPEIVQGFAVAVKAGLTKADFDATVGVHPTAAEEFVTL 524 (551)
Q Consensus 461 ~~~~~~kl~~~~~~~~ilG~~~~g~~~~e~i~~~~~~i~~~~~~~~l~~~~~~~pt~~e~~~~~ 524 (551)
+..||+|+++|+++++|||+|++|++|.|||+.+++||++++|.+|+.+++|+|||++|++.++
T Consensus 390 ~~~G~~Klv~d~~t~~IlGahivg~~A~ElI~~~~~a~~~g~t~~~~~~~i~~HPT~sE~~~~a 453 (454)
T COG1249 390 ETDGFVKLVVDKETGRILGAHIVGPGASELINEIALAIEMGATAEDLALTIHAHPTLSEALKEA 453 (454)
T ss_pred CCceEEEEEEECCCCeEEEEEEECCCHHHHHHHHHHHHHCCCcHHHHhcCCCCCCChHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999999999998764
|
|
| >PLN02546 glutathione reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-84 Score=689.58 Aligned_cols=482 Identities=89% Similarity=1.381 Sum_probs=443.3
Q ss_pred CCCccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhhccCCCc
Q 008860 70 HYDFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDESNGFGW 149 (551)
Q Consensus 70 ~~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~ 149 (551)
..+|||+|||||++|+.||..|++.|++|+|||+|+...+.+..+.+||+|.|+||+|+|.++..++..+.+++...||+
T Consensus 77 ~~~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~~~~~~~~~~~~~GGtC~n~GCiPsK~l~~aa~~~~~~~~~~~~g~ 156 (558)
T PLN02546 77 HYDFDLFTIGAGSGGVRASRFASNFGASAAVCELPFATISSDTLGGVGGTCVLRGCVPKKLLVYASKYSHEFEESRGFGW 156 (558)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccccccccccCCCccCcccCcchHHHHHHHHHHHHHHHHHhhhhcCc
Confidence 34699999999999999999999999999999966555555556789999999999999999999999998988889998
Q ss_pred ccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEeEEEEecCCEEEEcCEEEEeCeEEEcCCCCCCCCCCCCC
Q 008860 150 KYGTEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIEGRGKIVDPHTVDVDGKLYSARHILISVGGRPFIPDIPGS 229 (551)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~i~~~~v~v~g~~~~~d~lviAtG~~p~~p~i~g~ 229 (551)
.......+||..+..++++.+.++...+...+++.+|+++.+++.+++++++.++++.+.||+||||||++|..|++||.
T Consensus 157 ~~~~~~~~d~~~~~~~k~~~~~~l~~~~~~~l~~~gV~~i~G~a~~vd~~~V~v~G~~~~~D~LVIATGs~p~~P~IpG~ 236 (558)
T PLN02546 157 KYETEPKHDWNTLIANKNAELQRLTGIYKNILKNAGVTLIEGRGKIVDPHTVDVDGKLYTARNILIAVGGRPFIPDIPGI 236 (558)
T ss_pred ccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeEEEEccCCEEEECCEEEECCEEEEeCCCCCCCCCCCCh
Confidence 76545679999999999999999999999999999999999999999999999988899999999999999999999998
Q ss_pred CceecchhhhcCCCCCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCCCCCHHHHHHHHHHHHhcCcEEEcCccc
Q 008860 230 EYAIDSDAALDLPSKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRDFVAEQMSLRGIEFHTEESP 309 (551)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~~~~~v 309 (551)
+.++++++++.+...+++++|||+|++|+|+|..|.++|.+|+++++.+.+++.+++++.+.+++.|+++||++++++.+
T Consensus 237 ~~v~~~~~~l~~~~~~k~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~~il~~~d~~~~~~l~~~L~~~GV~i~~~~~v 316 (558)
T PLN02546 237 EHAIDSDAALDLPSKPEKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQKKVLRGFDEEVRDFVAEQMSLRGIEFHTEESP 316 (558)
T ss_pred hhccCHHHHHhccccCCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeccccccccCHHHHHHHHHHHHHCCcEEEeCCEE
Confidence 88889999988887899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEcCCceEEEEECCCeEEEeeEEEEecCcCCCCCCCCccccCeeecCCCCeEeCCCCCCCCCcEEEeCcCCCCCCCh
Q 008860 310 QAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNTKNLGLEKVGVKMTKNGAIEVDEYSGTAVPSIWAVGDVTDRINLT 389 (551)
Q Consensus 310 ~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~t~~~~vya~GD~~~~~~~~ 389 (551)
+++..++++.+.+.+.+++...+|.|++++|++|+++++++++++++++++|+|.||+++||++|||||+|||++.+.++
T Consensus 317 ~~i~~~~~g~v~v~~~~g~~~~~D~Viva~G~~Pnt~~L~le~~gl~~d~~G~I~VD~~l~Ts~p~IYAaGDv~~~~~l~ 396 (558)
T PLN02546 317 QAIIKSADGSLSLKTNKGTVEGFSHVMFATGRKPNTKNLGLEEVGVKMDKNGAIEVDEYSRTSVPSIWAVGDVTDRINLT 396 (558)
T ss_pred EEEEEcCCCEEEEEECCeEEEecCEEEEeeccccCCCcCChhhcCCcCCCCCcEeECCCceeCCCCEEEeeccCCCcccH
Confidence 99987544445566666655568999999999999998777899999998999999999999999999999999999999
Q ss_pred HHHHHhHHHHHHHHcCCCCCCCCCCCccEEEecCCceEEeeCCHHHHHhcCCCeEEEEeeccCcccccccCCCcEEEEEE
Q 008860 390 PVALMEGGALAKTLFQAEPTKPDYSAVPSAVFSQPPIGQVGLSEEQAIQEYGDIDVFTANFRPLKATLSGLPDRIFMKLV 469 (551)
Q Consensus 390 ~~A~~~g~~aa~~i~g~~~~~~~~~~~~~~~~~~~~~~~vGl~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~ 469 (551)
+.|.+||+++|+||+|......+|..+|+++|+.|++++||+||+||++++.++.++..+|.+..+.+....+.+|+||+
T Consensus 397 ~~A~~~g~~~a~~i~g~~~~~~~~~~vp~~vft~Peia~VGlte~eA~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~Klv 476 (558)
T PLN02546 397 PVALMEGGALAKTLFGNEPTKPDYRAVPSAVFSQPPIGQVGLTEEQAIEEYGDVDVFTANFRPLKATLSGLPDRVFMKLI 476 (558)
T ss_pred HHHHHHHHHHHHHHcCCCCCcCCCCCCCEEEeCCchHhhccCCHHHHHHcCCCeEEEEEecccchhhhhCCCCcEEEEEE
Confidence 99999999999999987655567889999999999999999999999999878888888888776666666678999999
Q ss_pred EECCCCeEEEEEEECCChhHHHHHHHHHHHCCCCHHHHccCcccCCCchHHHHHHHhhhhhhcCCCCCCCCCchhhhhhc
Q 008860 470 LCAKTNKVLGLHMCGEDAPEIVQGFAVAVKAGLTKADFDATVGVHPTAAEEFVTLRTPTRKIRKSPPSEGMTGPEVKAAA 549 (551)
Q Consensus 470 ~~~~~~~ilG~~~~g~~~~e~i~~~~~~i~~~~~~~~l~~~~~~~pt~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 549 (551)
+|+++++|||+|++|+++.|+|+.+++||++|+|++||.+++++|||++|++.++++..|+++++.+.|+-+++|+|+++
T Consensus 477 ~d~~t~~ILGa~ivG~~a~elI~~~a~ai~~~~t~~dl~~~~~~hPT~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 556 (558)
T PLN02546 477 VCAKTNKVLGVHMCGEDAPEIIQGFAVAVKAGLTKADFDATVGIHPTAAEEFVTMRTPTRKIRKDSPSEGKTKDEVKAAA 556 (558)
T ss_pred EECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhcccCCCChHHHHHHHhhhcccccccCCCccccchhhhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CC
Q 008860 550 GV 551 (551)
Q Consensus 550 ~~ 551 (551)
||
T Consensus 557 ~~ 558 (558)
T PLN02546 557 GV 558 (558)
T ss_pred cC
Confidence 97
|
|
| >KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-82 Score=594.26 Aligned_cols=452 Identities=55% Similarity=0.953 Sum_probs=429.2
Q ss_pred CCCccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhhccCCCc
Q 008860 70 HYDFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDESNGFGW 149 (551)
Q Consensus 70 ~~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~ 149 (551)
..+||.+|||||.+|+++|+++++.|.+|.|+|. +..+||+|.|+||+|+|.||+.+.+...+++..+|||
T Consensus 18 ~k~fDylvIGgGSGGvasARrAa~~GAkv~l~E~---------~f~lGGTCVn~GCVPKKvm~~~a~~~~~~~da~~yG~ 88 (478)
T KOG0405|consen 18 VKDFDYLVIGGGSGGVASARRAASHGAKVALCEL---------PFGLGGTCVNVGCVPKKVMWYAADYSEEMEDAKDYGF 88 (478)
T ss_pred ccccceEEEcCCcchhHHhHHHHhcCceEEEEec---------CCCcCceEEeeccccceeEEehhhhhHHhhhhhhcCC
Confidence 3479999999999999999999999999999992 4489999999999999999999999999999999999
Q ss_pred ccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEeEEEEecCCEEEE---cCE--EEEeCeEEEcCCCCCCCC
Q 008860 150 KYGTEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIEGRGKIVDPHTVDV---DGK--LYSARHILISVGGRPFIP 224 (551)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~i~~~~v~v---~g~--~~~~d~lviAtG~~p~~p 224 (551)
.......+||..+.+.+..++.++...+++.+.+.+|+++.|+++++++.++++ ++. .+++++++||||++|.+|
T Consensus 89 ~~~~~~~fdW~~ik~krdayi~RLngIY~~~L~k~~V~~i~G~a~f~~~~~v~V~~~d~~~~~Ytak~iLIAtGg~p~~P 168 (478)
T KOG0405|consen 89 PINEEGSFDWKVIKQKRDAYILRLNGIYKRNLAKAAVKLIEGRARFVSPGEVEVEVNDGTKIVYTAKHILIATGGRPIIP 168 (478)
T ss_pred ccccccCCcHHHHHhhhhHHHHHHHHHHHhhccccceeEEeeeEEEcCCCceEEEecCCeeEEEecceEEEEeCCccCCC
Confidence 998889999999999999999999999999999999999999999999997777 443 478999999999999999
Q ss_pred CCCCCCceecchhhhcCCCCCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCCCCCHHHHHHHHHHHHhcCcEEE
Q 008860 225 DIPGSEYAIDSDAALDLPSKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRDFVAEQMSLRGIEFH 304 (551)
Q Consensus 225 ~i~g~~~~~~~~~~~~~~~~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~ 304 (551)
+|||.++-+++|.++++++.|+|++|+|+|++++|+|..++.+|.+++++-|.+.+|+.||+.+++.+.+.|+..||++|
T Consensus 169 nIpG~E~gidSDgff~Lee~Pkr~vvvGaGYIavE~Agi~~gLgsethlfiR~~kvLR~FD~~i~~~v~~~~~~~ginvh 248 (478)
T KOG0405|consen 169 NIPGAELGIDSDGFFDLEEQPKRVVVVGAGYIAVEFAGIFAGLGSETHLFIRQEKVLRGFDEMISDLVTEHLEGRGINVH 248 (478)
T ss_pred CCCchhhccccccccchhhcCceEEEEccceEEEEhhhHHhhcCCeeEEEEecchhhcchhHHHHHHHHHHhhhcceeec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCcCCCCCCCCccccCeeecCCCCeEeCCCCCCCCCcEEEeCcCCC
Q 008860 305 TEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNTKNLGLEKVGVKMTKNGAIEVDEYSGTAVPSIWAVGDVTD 384 (551)
Q Consensus 305 ~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~t~~~~vya~GD~~~ 384 (551)
.++.++++....++...+....|....+|.++||+|+.|++..|++++.|++++++|.|.||++.+||+|+||++||+++
T Consensus 249 ~~s~~~~v~K~~~g~~~~i~~~~~i~~vd~llwAiGR~Pntk~L~le~vGVk~~~~g~IivDeYq~Tnvp~I~avGDv~g 328 (478)
T KOG0405|consen 249 KNSSVTKVIKTDDGLELVITSHGTIEDVDTLLWAIGRKPNTKGLNLENVGVKTDKNGAIIVDEYQNTNVPSIWAVGDVTG 328 (478)
T ss_pred ccccceeeeecCCCceEEEEeccccccccEEEEEecCCCCcccccchhcceeeCCCCCEEEeccccCCCCceEEeccccC
Confidence 99999999987776455666677655699999999999999999999999999999999999999999999999999999
Q ss_pred CCCChHHHHHhHHHHHHHHcC-CCCCCCCCCCccEEEecCCceEEeeCCHHHHHhcC--CCeEEEEeeccCcccccccCC
Q 008860 385 RINLTPVALMEGGALAKTLFQ-AEPTKPDYSAVPSAVFSQPPIGQVGLSEEQAIQEY--GDIDVFTANFRPLKATLSGLP 461 (551)
Q Consensus 385 ~~~~~~~A~~~g~~aa~~i~g-~~~~~~~~~~~~~~~~~~~~~~~vGl~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~ 461 (551)
...++++|+..|+.+++.++| .+..+.+|.++|.++|++|+++.|||||+||.++| +++.+|+..|.++.+++....
T Consensus 329 k~~LTPVAiaagr~la~rlF~~~~~~kldY~nVp~vVFshP~igtVGLtE~EAiekyg~~~i~vy~s~F~pm~~a~~~~k 408 (478)
T KOG0405|consen 329 KINLTPVAIAAGRKLANRLFGGGKDTKLDYENVPCVVFSHPPIGTVGLTEEEAIEKYGKGDIKVYTSKFNPMKYAMSGRK 408 (478)
T ss_pred cEecchHHHhhhhhHHHHhhcCCCCCccccccCceEEEecCCcccccCCHHHHHHHhCccceEEEecCCchhHhHhhcCC
Confidence 999999999999999999998 56678999999999999999999999999999997 599999999999999988888
Q ss_pred CcEEEEEEEECCCCeEEEEEEECCChhHHHHHHHHHHHCCCCHHHHccCcccCCCchHHHHHHHhhhhh
Q 008860 462 DRIFMKLVLCAKTNKVLGLHMCGEDAPEIVQGFAVAVKAGLTKADFDATVGVHPTAAEEFVTLRTPTRK 530 (551)
Q Consensus 462 ~~~~~kl~~~~~~~~ilG~~~~g~~~~e~i~~~~~~i~~~~~~~~l~~~~~~~pt~~e~~~~~~~~~~~ 530 (551)
++.++||+++.++.+++|+|++|+++.|+++.|+.|+++|.|-.|+++.+.+|||.+|.|++|+...|+
T Consensus 409 ~kt~mKlvc~~~~eKVvG~hm~G~~s~EilQGf~VAvKmGaTKadFD~tVaIHPTSAEElVTmr~~tr~ 477 (478)
T KOG0405|consen 409 EKTLMKLVCAGKSEKVVGVHMCGDDSAEILQGFAVAVKMGATKADFDSTVAIHPTSAEELVTMRSVTRR 477 (478)
T ss_pred cceEEEEEEecCCCcEEEEEEecCCcHHHHhhhhhheecCcchhhhccceeecCCCHHHheeccccccC
Confidence 999999999999999999999999999999999999999999999999999999999999999988775
|
|
| >PLN02507 glutathione reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-77 Score=633.64 Aligned_cols=460 Identities=57% Similarity=0.987 Sum_probs=414.7
Q ss_pred CCccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhhccCCCcc
Q 008860 71 YDFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDESNGFGWK 150 (551)
Q Consensus 71 ~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~ 150 (551)
.+|||+||||||+|+.||.+|++.|++|+|||++...++....+.+||+|.|+||+|+|.++..+++...++....||+.
T Consensus 24 ~~yDvvVIG~GpaG~~aA~~a~~~G~~V~liE~~~~~~~~~~~~~~GGtc~n~GciPsK~l~~~a~~~~~~~~~~~~G~~ 103 (499)
T PLN02507 24 YDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSESIGGVGGTCVIRGCVPKKILVYGATFGGEFEDAKNYGWE 103 (499)
T ss_pred cccCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCcccccccCCCccceeeccCchhHHHHHHHHHHHHHHHHHHhcCcc
Confidence 36999999999999999999999999999999543333334457799999999999999999999998888888889987
Q ss_pred cCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEeEEEEecCCEEEE---cCE--EEEeCeEEEcCCCCCCCCC
Q 008860 151 YGTEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIEGRGKIVDPHTVDV---DGK--LYSARHILISVGGRPFIPD 225 (551)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~i~~~~v~v---~g~--~~~~d~lviAtG~~p~~p~ 225 (551)
......++|.+++.+..+.+.++...+...+.+.+|+++.+++.+++++++.+ +++ .+.||+||||||++|..|+
T Consensus 104 ~~~~~~id~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~i~g~a~~vd~~~v~V~~~~g~~~~~~~d~LIIATGs~p~~p~ 183 (499)
T PLN02507 104 INEKVDFNWKKLLQKKTDEILRLNGIYKRLLANAGVKLYEGEGKIVGPNEVEVTQLDGTKLRYTAKHILIATGSRAQRPN 183 (499)
T ss_pred cCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEEEEEEecCCEEEEEeCCCcEEEEEcCEEEEecCCCCCCCC
Confidence 65566899999999998889888888888889999999999999999998887 444 5889999999999999999
Q ss_pred CCCCCceecchhhhcCCCCCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCCCCCHHHHHHHHHHHHhcCcEEEc
Q 008860 226 IPGSEYAIDSDAALDLPSKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRDFVAEQMSLRGIEFHT 305 (551)
Q Consensus 226 i~g~~~~~~~~~~~~~~~~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~~ 305 (551)
+||.+..+++++.+.++..+++++|||+|++|+|+|..|+++|.+|+++++.+.+++.+++++.+.+.+.|++.||++++
T Consensus 184 ipG~~~~~~~~~~~~l~~~~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~GI~i~~ 263 (499)
T PLN02507 184 IPGKELAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGATVDLFFRKELPLRGFDDEMRAVVARNLEGRGINLHP 263 (499)
T ss_pred CCCccceechHHhhhhhhcCCeEEEECCcHHHHHHHHHHHHcCCeEEEEEecCCcCcccCHHHHHHHHHHHHhCCCEEEe
Confidence 99987777888888888889999999999999999999999999999999999888889999999999999999999999
Q ss_pred CcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCcCCCCCCCCccccCeeecCCCCeEeCCCCCCCCCcEEEeCcCCCC
Q 008860 306 EESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNTKNLGLEKVGVKMTKNGAIEVDEYSGTAVPSIWAVGDVTDR 385 (551)
Q Consensus 306 ~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~t~~~~vya~GD~~~~ 385 (551)
++.|++++.++++ +.+.+.+|+++++|.|++++|++|++++++++.++++++++|+|.||+++||++|||||+|||++.
T Consensus 264 ~~~V~~i~~~~~~-~~v~~~~g~~i~~D~vl~a~G~~pn~~~l~l~~~gl~~~~~G~I~Vd~~~~Ts~p~IyAiGDv~~~ 342 (499)
T PLN02507 264 RTNLTQLTKTEGG-IKVITDHGEEFVADVVLFATGRAPNTKRLNLEAVGVELDKAGAVKVDEYSRTNIPSIWAIGDVTNR 342 (499)
T ss_pred CCEEEEEEEeCCe-EEEEECCCcEEEcCEEEEeecCCCCCCCCCchhhCcEECCCCcEecCCCCcCCCCCEEEeeEcCCC
Confidence 9999999876555 677888888899999999999999999877889999999999999999999999999999999998
Q ss_pred CCChHHHHHhHHHHHHHHcCCCCCCCCCCCccEEEecCCceEEeeCCHHHHHhc-CCCeEEEEeeccCcccccccCCCcE
Q 008860 386 INLTPVALMEGGALAKTLFQAEPTKPDYSAVPSAVFSQPPIGQVGLSEEQAIQE-YGDIDVFTANFRPLKATLSGLPDRI 464 (551)
Q Consensus 386 ~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~~~~~~~~~~~~~vGl~~~~a~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (551)
+.+++.|.+||+++++||+++...++++..+|+.+|+.|+++++|+||+||++. +.++.+...++.+..+++....+++
T Consensus 343 ~~l~~~A~~qg~~aa~ni~g~~~~~~~~~~~p~~if~~p~ia~vGlte~ea~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 422 (499)
T PLN02507 343 INLTPVALMEGTCFAKTVFGGQPTKPDYENVACAVFCIPPLSVVGLSEEEAVEQAKGDILVFTSSFNPMKNTISGRQEKT 422 (499)
T ss_pred CccHHHHHHHHHHHHHHHcCCCCCcCCCCCCCeEEECCCccEEEeCCHHHHHhccCCCEEEEEeecCccccccccCCCCE
Confidence 899999999999999999987665677888999999999999999999999987 4567777777777666665556789
Q ss_pred EEEEEEECCCCeEEEEEEECCChhHHHHHHHHHHHCCCCHHHHccCcccCCCchHHHHHHHhhhhhh
Q 008860 465 FMKLVLCAKTNKVLGLHMCGEDAPEIVQGFAVAVKAGLTKADFDATVGVHPTAAEEFVTLRTPTRKI 531 (551)
Q Consensus 465 ~~kl~~~~~~~~ilG~~~~g~~~~e~i~~~~~~i~~~~~~~~l~~~~~~~pt~~e~~~~~~~~~~~~ 531 (551)
|+||++|++|++|||+|++|+++.|+|+.+++||++++|++||.+++++|||++|.+.++...++++
T Consensus 423 ~~Kli~d~~t~~ilG~~~vg~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~E~~~~~~~~~~~~ 489 (499)
T PLN02507 423 VMKLIVDAETDKVLGASMCGPDAPEIMQGIAVALKCGATKAQFDSTVGIHPSAAEEFVTMRSVTRRV 489 (499)
T ss_pred EEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhcCcCCCChHHHHHHHHhhhccc
Confidence 9999999999999999999999999999999999999999999999999999999998877666543
|
|
| >TIGR01423 trypano_reduc trypanothione-disulfide reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-77 Score=628.49 Aligned_cols=461 Identities=40% Similarity=0.702 Sum_probs=404.5
Q ss_pred CCccEEEECCChHHHHHHHHHHhC-CCcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhhccCCCc
Q 008860 71 YDFDLFTIGAGSGGVRASRFAANF-GASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDESNGFGW 149 (551)
Q Consensus 71 ~~~dVvIIGgG~aGl~aA~~l~~~-G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~ 149 (551)
.+|||+|||||++|+.||.++++. |.+|+|||+...+. ......+||+|.|+||+|+|.|+..++..+..++...||+
T Consensus 2 ~~~DviVIG~G~~G~~aA~~aa~~~g~~V~lie~~~~~~-~~~~~~~GGtCln~GCiPsK~l~~~a~~~~~~~~~~~~gi 80 (486)
T TIGR01423 2 KAFDLVVIGAGSGGLEAGWNAATLYKKRVAVIDVQTHHG-PPHYAALGGTCVNVGCVPKKLMVTGAQYMDTLRESAGFGW 80 (486)
T ss_pred CccCEEEECCChHHHHHHHHHHHhcCCEEEEEecccCcc-ccccCCccCeecCcCCccHHHHHHHHHHHHHHHHhhccCe
Confidence 369999999999999999999996 99999999310000 0012479999999999999999999999888888888888
Q ss_pred ccC-CCCCCChHHHHHHHHHHHHHHHHHHHHHHHh-CCeEEEEeEEEEecCCEEEEc---------CEEEEeCeEEEcCC
Q 008860 150 KYG-TEPQHDWSTLIANKNAELQRLTGIYKNILIN-AGITLIEGRGKIVDPHTVDVD---------GKLYSARHILISVG 218 (551)
Q Consensus 150 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~i~~~~v~v~---------g~~~~~d~lviAtG 218 (551)
... ....+||..+.++.++.+.++...+...+++ .+|+++.|++.+++++++.++ .+.+.||+||||||
T Consensus 81 ~~~~~~~~~d~~~~~~~~~~~v~~~~~~~~~~l~~~~gv~~i~G~a~f~~~~~v~V~~~~~~~~~~~~~~~~d~lIIATG 160 (486)
T TIGR01423 81 EFDRSSVKANWKALIAAKNKAVLDINKSYEGMFADTEGLTFFLGWGALEDKNVVLVRESADPKSAVKERLQAEHILLATG 160 (486)
T ss_pred eccCCccccCHHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEEEEEEccCCEEEEeeccCCCCCcceEEECCEEEEecC
Confidence 643 2457899999999999999998888888887 499999999999999999883 25799999999999
Q ss_pred CCCCCCCCCCCCceecchhhhcCCCCCCeEEEEcCcHHHHHHHHHHHhC---CCeEEEEeecCccCCCCCHHHHHHHHHH
Q 008860 219 GRPFIPDIPGSEYAIDSDAALDLPSKPEKIAIVGGGYIALEFAGIFSGL---TSEVHVFIRQKKVLRGFDEDIRDFVAEQ 295 (551)
Q Consensus 219 ~~p~~p~i~g~~~~~~~~~~~~~~~~~~~vvViG~G~~g~e~a~~l~~~---g~~Vtlv~~~~~~l~~~~~~~~~~l~~~ 295 (551)
++|..|++||.+.++++++++.+...+++++|||+|++|+|+|..+..+ |.+|+++++.+++++.+|+++.+.+.+.
T Consensus 161 s~p~~p~i~G~~~~~~~~~~~~~~~~~~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~~~il~~~d~~~~~~l~~~ 240 (486)
T TIGR01423 161 SWPQMLGIPGIEHCISSNEAFYLDEPPRRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNNMILRGFDSTLRKELTKQ 240 (486)
T ss_pred CCCCCCCCCChhheechhhhhccccCCCeEEEECCCHHHHHHHHHHHHhccCCCeEEEEecCCccccccCHHHHHHHHHH
Confidence 9999999999888889998888888899999999999999999887665 9999999999999999999999999999
Q ss_pred HHhcCcEEEcCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCcCCCCCCCCccccCeeecCCCCeEeCCCCCCCCCc
Q 008860 296 MSLRGIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNTKNLGLEKVGVKMTKNGAIEVDEYSGTAVPS 375 (551)
Q Consensus 296 l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~t~~~~ 375 (551)
|+++||++++++.+++++.++++...+.+.+|+++++|.|++|+|++|+++.++++..+++++++|+|.||+++||++||
T Consensus 241 L~~~GI~i~~~~~v~~i~~~~~~~~~v~~~~g~~i~~D~vl~a~G~~Pn~~~l~l~~~gl~~~~~G~I~Vd~~l~Ts~~~ 320 (486)
T TIGR01423 241 LRANGINIMTNENPAKVTLNADGSKHVTFESGKTLDVDVVMMAIGRVPRTQTLQLDKVGVELTKKGAIQVDEFSRTNVPN 320 (486)
T ss_pred HHHcCCEEEcCCEEEEEEEcCCceEEEEEcCCCEEEcCEEEEeeCCCcCcccCCchhhCceECCCCCEecCCCCcCCCCC
Confidence 99999999999999999876444356777788889999999999999999987788899999999999999999999999
Q ss_pred EEEeCcCCCCCCChHHHHHhHHHHHHHHcCCCCCCCCCCCccEEEecCCceEEeeCCHHHHHhcCCCeEEEEeeccCccc
Q 008860 376 IWAVGDVTDRINLTPVALMEGGALAKTLFQAEPTKPDYSAVPSAVFSQPPIGQVGLSEEQAIQEYGDIDVFTANFRPLKA 455 (551)
Q Consensus 376 vya~GD~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~~~~~~~~~~~~~vGl~~~~a~~~~~~~~~~~~~~~~~~~ 455 (551)
|||+|||++.+.+++.|.+||+++++||+|.+....++..+|+++|+.|++++||+||+||++.+.++.++...+.+...
T Consensus 321 IyA~GDv~~~~~l~~~A~~qG~~aa~ni~g~~~~~~~~~~vp~~vft~peia~vGlte~eA~~~~~~~~~~~~~~~~~~~ 400 (486)
T TIGR01423 321 IYAIGDVTDRVMLTPVAINEGAAFVDTVFGNKPRKTDHTRVASAVFSIPPIGTCGLVEEDAAKKFEKVAVYESSFTPLMH 400 (486)
T ss_pred EEEeeecCCCcccHHHHHHHHHHHHHHHhCCCCcccCCCCCCEEEeCCCceEEeeCCHHHHHhcCCceEEEEEeeCchhh
Confidence 99999999999999999999999999999865445677789999999999999999999999886667777666665444
Q ss_pred ccccCC-CcEEEEEEEECCCCeEEEEEEECCChhHHHHHHHHHHHCCCCHHHHccCcccCCCchHHHHHHHhhhhhhc
Q 008860 456 TLSGLP-DRIFMKLVLCAKTNKVLGLHMCGEDAPEIVQGFAVAVKAGLTKADFDATVGVHPTAAEEFVTLRTPTRKIR 532 (551)
Q Consensus 456 ~~~~~~-~~~~~kl~~~~~~~~ilG~~~~g~~~~e~i~~~~~~i~~~~~~~~l~~~~~~~pt~~e~~~~~~~~~~~~~ 532 (551)
.+.... ..+|+||++|+++++|||+|++|++++|+|+.+++||++++|++||.+++++|||++|.+.++.-..+++-
T Consensus 401 ~~~~~~~~~g~~Klv~d~~~~~iLGa~ivg~~a~elI~~~~~ai~~~~t~~dl~~~~~~hPt~sE~~~~~~~~~~~~~ 478 (486)
T TIGR01423 401 NISGSKYKKFVAKIVTNHADGTVLGVHLLGDSSPEIIQAVGICLKLNAKISDFYNTIGVHPTSAEELCSMRTPSYYYQ 478 (486)
T ss_pred hhccCccCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhhcccCCCCcHHHHHhhcccccccc
Confidence 433222 36899999999999999999999999999999999999999999999999999999999888764455443
|
Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase. |
| >TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-77 Score=626.35 Aligned_cols=443 Identities=43% Similarity=0.794 Sum_probs=405.9
Q ss_pred CccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhhccCCCccc
Q 008860 72 DFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDESNGFGWKY 151 (551)
Q Consensus 72 ~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~~ 151 (551)
+|||+||||||||++||..|++.|++|+||| +..+||+|.|+||+|+|.++..+......++...||+..
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE----------~~~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~ 71 (450)
T TIGR01421 2 HYDYLVIGGGSGGIASARRAAEHGAKALLVE----------AKKLGGTCVNVGCVPKKVMWYASDLAERMHDAADYGFYQ 71 (450)
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCcEEEec----------ccccccceeccCcCccHHHHHHHHHHHHHhHHhhcCccc
Confidence 5999999999999999999999999999999 667999999999999999999999888888888888875
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEeEEEEecCCEEEEcCEEEEeCeEEEcCCCCCCCC-CCCCCC
Q 008860 152 GTEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIEGRGKIVDPHTVDVDGKLYSARHILISVGGRPFIP-DIPGSE 230 (551)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~i~~~~v~v~g~~~~~d~lviAtG~~p~~p-~i~g~~ 230 (551)
.....++|..+..+..+.++.+...+...+++.+|+++.+++.+.+++++.++++.+.||+||||||++|+.| ++||.+
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~~~~~~~~~v~v~~~~~~~d~vIiAtGs~p~~p~~i~g~~ 151 (450)
T TIGR01421 72 NLENTFNWPELKEKRDAYVDRLNGIYQKNLEKNKVDVIFGHARFTKDGTVEVNGRDYTAPHILIATGGKPSFPENIPGAE 151 (450)
T ss_pred CCcCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEECCEEEEeCEEEEecCCCCCCCCCCCCCc
Confidence 4344689999999999999998888888889999999999999999999888888899999999999999999 899988
Q ss_pred ceecchhhhcCCCCCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCCCCCHHHHHHHHHHHHhcCcEEEcCcccE
Q 008860 231 YAIDSDAALDLPSKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRDFVAEQMSLRGIEFHTEESPQ 310 (551)
Q Consensus 231 ~~~~~~~~~~~~~~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~~~~~v~ 310 (551)
..+++++++.+...+++++|||+|++|+|+|..|+++|.+|+++++.+.+++.+|+++.+.+++.|+++||++++++.|+
T Consensus 152 ~~~~~~~~~~~~~~~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~il~~~d~~~~~~~~~~l~~~gI~i~~~~~v~ 231 (450)
T TIGR01421 152 LGTDSDGFFALEELPKRVVIVGAGYIAVELAGVLHGLGSETHLVIRHERVLRSFDSMISETITEEYEKEGINVHKLSKPV 231 (450)
T ss_pred eeEcHHHhhCccccCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCcccCHHHHHHHHHHHHHcCCEEEcCCEEE
Confidence 77888899888888999999999999999999999999999999999999988999999999999999999999999999
Q ss_pred EEEEcCCceEEEEECCC-eEEEeeEEEEecCcCCCCCCCCccccCeeecCCCCeEeCCCCCCCCCcEEEeCcCCCCCCCh
Q 008860 311 AILKSTDGSLSVKTNKG-TVDGFSHVMFATGRRPNTKNLGLEKVGVKMTKNGAIEVDEYSGTAVPSIWAVGDVTDRINLT 389 (551)
Q Consensus 311 ~i~~~~~~~~~V~~~~G-~~i~~d~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~t~~~~vya~GD~~~~~~~~ 389 (551)
+++.++++.+.+.+.+| +.+++|.|++|+|++|++++++++..+++++++|+|.||+++||++|||||+|||++.+.++
T Consensus 232 ~i~~~~~~~~~v~~~~g~~~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~~G~i~vd~~~~T~~p~IyAiGD~~~~~~~~ 311 (450)
T TIGR01421 232 KVEKTVEGKLVIHFEDGKSIDDVDELIWAIGRKPNTKGLGLENVGIKLNEKGQIIVDEYQNTNVPGIYALGDVVGKVELT 311 (450)
T ss_pred EEEEeCCceEEEEECCCcEEEEcCEEEEeeCCCcCcccCCccccCcEECCCCcEEeCCCCcCCCCCEEEEEecCCCcccH
Confidence 99875444356777778 57999999999999999998778899999999999999999999999999999999999999
Q ss_pred HHHHHhHHHHHHHHcCCC-CCCCCCCCccEEEecCCceEEeeCCHHHHHhcC-C-CeEEEEeeccCcccccccCCCcEEE
Q 008860 390 PVALMEGGALAKTLFQAE-PTKPDYSAVPSAVFSQPPIGQVGLSEEQAIQEY-G-DIDVFTANFRPLKATLSGLPDRIFM 466 (551)
Q Consensus 390 ~~A~~~g~~aa~~i~g~~-~~~~~~~~~~~~~~~~~~~~~vGl~~~~a~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (551)
+.|.+||+++|+||+++. ....++..+|+++|++|++++||+||+||++++ . .+.+...++.+..+++..+.+.+|+
T Consensus 312 ~~A~~~g~~aa~~i~~~~~~~~~~~~~~p~~~f~~p~ia~vGlte~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~ 391 (450)
T TIGR01421 312 PVAIAAGRKLSERLFNGKTDDKLDYNNVPTVVFSHPPIGTIGLTEKEAIEKYGKENIKVYNSSFTPMYYAMTSEKQKCRM 391 (450)
T ss_pred HHHHHHHHHHHHHHhcCCCCCccCcccCCeEEeCCCceEEEeCCHHHHHhhcCCCCEEEEEEEcChhHHHHhcCCCceEE
Confidence 999999999999999754 344578899999999999999999999998873 2 4777777888777777677888999
Q ss_pred EEEEECCCCeEEEEEEECCChhHHHHHHHHHHHCCCCHHHHccCcccCCCchHHHHHH
Q 008860 467 KLVLCAKTNKVLGLHMCGEDAPEIVQGFAVAVKAGLTKADFDATVGVHPTAAEEFVTL 524 (551)
Q Consensus 467 kl~~~~~~~~ilG~~~~g~~~~e~i~~~~~~i~~~~~~~~l~~~~~~~pt~~e~~~~~ 524 (551)
||++|++||+|||+|++|++|+|+|+.+++||++|+|++||.+++++|||++|++.++
T Consensus 392 klv~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~ 449 (450)
T TIGR01421 392 KLVCAGKEEKVVGLHGIGDGVDEMLQGFAVAIKMGATKADFDNTVAIHPTSSEELVTM 449 (450)
T ss_pred EEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhcccCCCChHHHHhhc
Confidence 9999999999999999999999999999999999999999999999999999998765
|
The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria. |
| >PRK06116 glutathione reductase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-77 Score=626.08 Aligned_cols=445 Identities=51% Similarity=0.892 Sum_probs=407.8
Q ss_pred CCCCccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhh-ccCC
Q 008860 69 SHYDFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDE-SNGF 147 (551)
Q Consensus 69 ~~~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~-~~~~ 147 (551)
|+.+|||+||||||||++||..|++.|++|+||| +..+||+|.|.||+|+|.+++.++..+.++. ...+
T Consensus 1 m~~~~DvvVIG~GpaG~~aA~~~a~~G~~V~liE----------~~~~GG~c~n~gciP~k~l~~~~~~~~~~~~~~~~~ 70 (450)
T PRK06116 1 MTKDYDLIVIGGGSGGIASANRAAMYGAKVALIE----------AKRLGGTCVNVGCVPKKLMWYGAQIAEAFHDYAPGY 70 (450)
T ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCeEEEEe----------ccchhhhhhccCcchHHHHHHHHHHHHHHHhHHHhc
Confidence 4457999999999999999999999999999999 6689999999999999999999988887776 5667
Q ss_pred CcccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEeEEEEecCCEEEEcCEEEEeCeEEEcCCCCCCCCCCC
Q 008860 148 GWKYGTEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIEGRGKIVDPHTVDVDGKLYSARHILISVGGRPFIPDIP 227 (551)
Q Consensus 148 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~i~~~~v~v~g~~~~~d~lviAtG~~p~~p~i~ 227 (551)
|+... .+.++|..+.++..+.++++...+...+.+.+|+++.+++.++++++++++++.+.||+||||||++|..|++|
T Consensus 71 g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~~~~v~~~~v~~~g~~~~~d~lViATGs~p~~p~i~ 149 (450)
T PRK06116 71 GFDVT-ENKFDWAKLIANRDAYIDRLHGSYRNGLENNGVDLIEGFARFVDAHTVEVNGERYTADHILIATGGRPSIPDIP 149 (450)
T ss_pred CCCCC-CCCcCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEECCEEEEeCEEEEecCCCCCCCCCC
Confidence 77543 46789999999988888888888888888899999999999999999999888899999999999999999999
Q ss_pred CCCceecchhhhcCCCCCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCCCCCHHHHHHHHHHHHhcCcEEEcCc
Q 008860 228 GSEYAIDSDAALDLPSKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRDFVAEQMSLRGIEFHTEE 307 (551)
Q Consensus 228 g~~~~~~~~~~~~~~~~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~~~~ 307 (551)
|.+.++++++++.+...+++++|||+|++|+|+|..|.++|.+|+++++.+.+++.+++++.+.+.+.|++.||++++++
T Consensus 150 g~~~~~~~~~~~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~L~~~GV~i~~~~ 229 (450)
T PRK06116 150 GAEYGITSDGFFALEELPKRVAVVGAGYIAVEFAGVLNGLGSETHLFVRGDAPLRGFDPDIRETLVEEMEKKGIRLHTNA 229 (450)
T ss_pred CcceeEchhHhhCccccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCccccCHHHHHHHHHHHHHCCcEEECCC
Confidence 99888889998888888999999999999999999999999999999999988888999999999999999999999999
Q ss_pred ccEEEEEcCCceEEEEECCCeEEEeeEEEEecCcCCCCCCCCccccCeeecCCCCeEeCCCCCCCCCcEEEeCcCCCCCC
Q 008860 308 SPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNTKNLGLEKVGVKMTKNGAIEVDEYSGTAVPSIWAVGDVTDRIN 387 (551)
Q Consensus 308 ~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~t~~~~vya~GD~~~~~~ 387 (551)
+|++++.++++.+.+.+.+|+++++|.|++|+|++|+++.+.++..+++++++|+|.||+++||++|||||+|||++.++
T Consensus 230 ~V~~i~~~~~g~~~v~~~~g~~i~~D~Vv~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~Ts~~~IyA~GD~~~~~~ 309 (450)
T PRK06116 230 VPKAVEKNADGSLTLTLEDGETLTVDCLIWAIGREPNTDGLGLENAGVKLNEKGYIIVDEYQNTNVPGIYAVGDVTGRVE 309 (450)
T ss_pred EEEEEEEcCCceEEEEEcCCcEEEeCEEEEeeCCCcCCCCCCchhcCceECCCCcEecCCCCCcCCCCEEEEeecCCCcC
Confidence 99999876554366788888889999999999999999987778899999999999999999999999999999999889
Q ss_pred ChHHHHHhHHHHHHHHcCCCC-CCCCCCCccEEEecCCceEEeeCCHHHHHhcCCC--eEEEEeeccCcccccccCCCcE
Q 008860 388 LTPVALMEGGALAKTLFQAEP-TKPDYSAVPSAVFSQPPIGQVGLSEEQAIQEYGD--IDVFTANFRPLKATLSGLPDRI 464 (551)
Q Consensus 388 ~~~~A~~~g~~aa~~i~g~~~-~~~~~~~~~~~~~~~~~~~~vGl~~~~a~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 464 (551)
+++.|.+||+++|+||+|... ...+|..+|+.+|+.|++++||+||+||++.+.+ +.+...++.+..+++..+.+++
T Consensus 310 ~~~~A~~~g~~aa~~i~g~~~~~~~~~~~~p~~if~~p~~a~vGlte~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 389 (450)
T PRK06116 310 LTPVAIAAGRRLSERLFNNKPDEKLDYSNIPTVVFSHPPIGTVGLTEEEAREQYGEDNVKVYRSSFTPMYTALTGHRQPC 389 (450)
T ss_pred cHHHHHHHHHHHHHHHhCCCCCCcCCcCCCCeEEeCCCccEEeeCCHHHHHHhCCCCcEEEEEEecchhHHHHhcCCCce
Confidence 999999999999999998654 4567889999999999999999999999998765 7888878888777776777899
Q ss_pred EEEEEEECCCCeEEEEEEECCChhHHHHHHHHHHHCCCCHHHHccCcccCCCchHHHHHH
Q 008860 465 FMKLVLCAKTNKVLGLHMCGEDAPEIVQGFAVAVKAGLTKADFDATVGVHPTAAEEFVTL 524 (551)
Q Consensus 465 ~~kl~~~~~~~~ilG~~~~g~~~~e~i~~~~~~i~~~~~~~~l~~~~~~~pt~~e~~~~~ 524 (551)
|+||++|+++++|||+|++|++++|+|+.+++||++++|++||.+++++|||++|++.++
T Consensus 390 ~~klv~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~ 449 (450)
T PRK06116 390 LMKLVVVGKEEKVVGLHGIGFGADEMIQGFAVAIKMGATKADFDNTVAIHPTAAEEFVTM 449 (450)
T ss_pred EEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcccccCCChHHHHhhc
Confidence 999999999999999999999999999999999999999999999999999999998764
|
|
| >TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-76 Score=622.56 Aligned_cols=441 Identities=56% Similarity=0.967 Sum_probs=406.0
Q ss_pred CccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhhccCCCccc
Q 008860 72 DFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDESNGFGWKY 151 (551)
Q Consensus 72 ~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~~ 151 (551)
+|||+||||||||++||+.+++.|++|+||| +..+||+|.|.||+|+|.++..++..+.+++...||+..
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~lie----------~~~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~ 71 (446)
T TIGR01424 2 DYDLFVIGAGSGGVRAARLAANHGAKVAIAE----------EPRVGGTCVIRGCVPKKLMVYGSTFGGEFEDAAGYGWTV 71 (446)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEEEe----------cCccCceeecCCcCchHHHHHHHHHHHHHhhhHhcCcCC
Confidence 5999999999999999999999999999999 567999999999999999999999999899888898875
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEeEEEEecCCEEEE--cCEEEEeCeEEEcCCCCCCCCCCCCC
Q 008860 152 GTEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIEGRGKIVDPHTVDV--DGKLYSARHILISVGGRPFIPDIPGS 229 (551)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~i~~~~v~v--~g~~~~~d~lviAtG~~p~~p~i~g~ 229 (551)
. ...++|..+..+..+.+.++...+...+++.+++++.+++.+++++++.+ +++.+.||+||||||++|..|++||.
T Consensus 72 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~g~~~~v~~~~v~v~~~g~~~~~d~lIiATGs~p~~p~i~G~ 150 (446)
T TIGR01424 72 G-KARFDWKKLLQKKDDEIARLSGLYKRLLANAGVELLEGRARLVGPNTVEVLQDGTTYTAKKILIAVGGRPQKPNLPGH 150 (446)
T ss_pred C-CCCcCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEEEEEEecCCEEEEecCCeEEEcCEEEEecCCcCCCCCCCCc
Confidence 4 45789999999999999999888888899999999999999999988877 66789999999999999999999998
Q ss_pred CceecchhhhcCCCCCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCCCCCHHHHHHHHHHHHhcCcEEEcCccc
Q 008860 230 EYAIDSDAALDLPSKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRDFVAEQMSLRGIEFHTEESP 309 (551)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~~~~~v 309 (551)
+..+++++.+.+...+++++|||+|++|+|+|..++++|.+|+++++.+.+++.+++++.+.+.+.|++.||+++++++|
T Consensus 151 ~~~~~~~~~~~l~~~~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~gV~i~~~~~v 230 (446)
T TIGR01424 151 ELGITSNEAFHLPTLPKSILILGGGYIAVEFAGIWRGLGVQVTLIYRGELILRGFDDDMRALLARNMEGRGIRIHPQTSL 230 (446)
T ss_pred cceechHHhhcccccCCeEEEECCcHHHHHHHHHHHHcCCeEEEEEeCCCCCcccCHHHHHHHHHHHHHCCCEEEeCCEE
Confidence 77778888888877899999999999999999999999999999999999888899999999999999999999999999
Q ss_pred EEEEEcCCceEEEEECCCeEEEeeEEEEecCcCCCCCCCCccccCeeecCCCCeEeCCCCCCCCCcEEEeCcCCCCCCCh
Q 008860 310 QAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNTKNLGLEKVGVKMTKNGAIEVDEYSGTAVPSIWAVGDVTDRINLT 389 (551)
Q Consensus 310 ~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~t~~~~vya~GD~~~~~~~~ 389 (551)
++++.++++ +.+.+.+|+++++|.||+|+|+.|+++.++++..+++++++|+|.||+++||++|||||+|||++.++++
T Consensus 231 ~~i~~~~~~-~~v~~~~g~~i~~D~viva~G~~pn~~~l~l~~~g~~~~~~G~i~vd~~~~Ts~~~IyA~GD~~~~~~l~ 309 (446)
T TIGR01424 231 TSITKTDDG-LKVTLSHGEEIVADVVLFATGRSPNTKGLGLEAAGVELNDAGAIAVDEYSRTSIPSIYAVGDVTDRINLT 309 (446)
T ss_pred EEEEEcCCe-EEEEEcCCcEeecCEEEEeeCCCcCCCcCCccccCeEECCCCcEEeCCCCccCCCCEEEeeccCCCccch
Confidence 999876555 6677778888999999999999999998778899999999999999999999999999999999999999
Q ss_pred HHHHHhHHHHHHHHcCCCCCCCCCCCccEEEecCCceEEeeCCHHHHHhcC-CCeEEEEeeccCcccccccCCCcEEEEE
Q 008860 390 PVALMEGGALAKTLFQAEPTKPDYSAVPSAVFSQPPIGQVGLSEEQAIQEY-GDIDVFTANFRPLKATLSGLPDRIFMKL 468 (551)
Q Consensus 390 ~~A~~~g~~aa~~i~g~~~~~~~~~~~~~~~~~~~~~~~vGl~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~kl 468 (551)
+.|.+||+++++||+|++....++..+|+++|+.|+++++|+||+||++.+ .++.+....+.+..+++..+.+.+|+||
T Consensus 310 ~~A~~~g~~~a~~i~~~~~~~~~~~~~p~~if~~p~ia~vG~te~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~kl 389 (446)
T TIGR01424 310 PVAIMEATCFANTEFGNNPTKFDHDLIATAVFSQPPLGTVGLTEEEAREKFTGDILVYRAGFRPMKNTFSGRQEKTLMKL 389 (446)
T ss_pred hHHHHHHHHHHHHHhcCCCCccCcCCCCeEEeCCchhEEEECCHHHHHhhcCCCEEEEEEecCchHhHhhcCCCceEEEE
Confidence 999999999999999865445677889999999999999999999999884 6788887777777667667778899999
Q ss_pred EEECCCCeEEEEEEECCChhHHHHHHHHHHHCCCCHHHHccCcccCCCchHHHHHH
Q 008860 469 VLCAKTNKVLGLHMCGEDAPEIVQGFAVAVKAGLTKADFDATVGVHPTAAEEFVTL 524 (551)
Q Consensus 469 ~~~~~~~~ilG~~~~g~~~~e~i~~~~~~i~~~~~~~~l~~~~~~~pt~~e~~~~~ 524 (551)
++|++|++|||+|++|++++|+|+.+++||++++|++||.+++++|||++|.+.++
T Consensus 390 i~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~ 445 (446)
T TIGR01424 390 VVDEKDDKVLGAHMVGPDAAEIIQGIAIALKMGATKADFDSTVGIHPSSAEEFVTM 445 (446)
T ss_pred EEeCCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhhccccCCChHHHHhhc
Confidence 99999999999999999999999999999999999999999999999999997764
|
The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria. |
| >PRK06370 mercuric reductase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-75 Score=616.65 Aligned_cols=451 Identities=31% Similarity=0.488 Sum_probs=407.3
Q ss_pred CCCCccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhhccCCC
Q 008860 69 SHYDFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDESNGFG 148 (551)
Q Consensus 69 ~~~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g 148 (551)
|+.+|||+||||||||++||.+|++.|++|+||| +..+||+|.|.||+|+|.++..++..........+|
T Consensus 2 ~~~~~DvvVIG~GpaG~~aA~~aa~~G~~v~lie----------~~~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g 71 (463)
T PRK06370 2 PAQRYDAIVIGAGQAGPPLAARAAGLGMKVALIE----------RGLLGGTCVNTGCVPTKTLIASARAAHLARRAAEYG 71 (463)
T ss_pred CCccccEEEECCCHHHHHHHHHHHhCCCeEEEEe----------cCccCCceeccccCcHHHHHHHHHHHHHHHHHHhcC
Confidence 4567999999999999999999999999999999 678999999999999999999999988888888888
Q ss_pred cccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhC-CeEEEEeEEEEecCCEEEEcCEEEEeCeEEEcCCCCCCCCCCC
Q 008860 149 WKYGTEPQHDWSTLIANKNAELQRLTGIYKNILINA-GITLIEGRGKIVDPHTVDVDGKLYSARHILISVGGRPFIPDIP 227 (551)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~i~~~~v~v~g~~~~~d~lviAtG~~p~~p~i~ 227 (551)
+.......++|..+..+......++...+...+++. +|+++.+++.+++++++.++++.+.||+||||||++|+.|++|
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~g~~~~~~~~~v~v~~~~~~~d~lViATGs~p~~p~i~ 151 (463)
T PRK06370 72 VSVGGPVSVDFKAVMARKRRIRARSRHGSEQWLRGLEGVDVFRGHARFESPNTVRVGGETLRAKRIFINTGARAAIPPIP 151 (463)
T ss_pred cccCccCccCHHHHHHHHHHHHHHHHHhHHHHHhcCCCcEEEEEEEEEccCCEEEECcEEEEeCEEEEcCCCCCCCCCCC
Confidence 875434578999999999888888777777888887 9999999999999999999888899999999999999999999
Q ss_pred CCCc--eecchhhhcCCCCCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCCCCCHHHHHHHHHHHHhcCcEEEc
Q 008860 228 GSEY--AIDSDAALDLPSKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRDFVAEQMSLRGIEFHT 305 (551)
Q Consensus 228 g~~~--~~~~~~~~~~~~~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~~ 305 (551)
|.+. +++.++++.+...+++++|||+|++|+|+|..|+++|.+|+++++.+.+++.+++++.+.+.+.|++.||++++
T Consensus 152 G~~~~~~~~~~~~~~~~~~~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~~~~~~~~~~l~~~l~~~GV~i~~ 231 (463)
T PRK06370 152 GLDEVGYLTNETIFSLDELPEHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGPRLLPREDEDVAAAVREILEREGIDVRL 231 (463)
T ss_pred CCCcCceEcchHhhCccccCCEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCCCcccCHHHHHHHHHHHHhCCCEEEe
Confidence 9753 67888888777789999999999999999999999999999999999999989999999999999999999999
Q ss_pred CcccEEEEEcCCceEEEEE--C-CCeEEEeeEEEEecCcCCCCCCCCccccCeeecCCCCeEeCCCCCCCCCcEEEeCcC
Q 008860 306 EESPQAILKSTDGSLSVKT--N-KGTVDGFSHVMFATGRRPNTKNLGLEKVGVKMTKNGAIEVDEYSGTAVPSIWAVGDV 382 (551)
Q Consensus 306 ~~~v~~i~~~~~~~~~V~~--~-~G~~i~~d~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~t~~~~vya~GD~ 382 (551)
+++|.+++.++++ ..+.+ . +++++++|.||+|+|++|+++.+.+++.+++++++|+|.||+++||++|||||+|||
T Consensus 232 ~~~V~~i~~~~~~-~~v~~~~~~~~~~i~~D~Vi~A~G~~pn~~~l~l~~~g~~~~~~G~i~vd~~l~t~~~~IyAiGD~ 310 (463)
T PRK06370 232 NAECIRVERDGDG-IAVGLDCNGGAPEITGSHILVAVGRVPNTDDLGLEAAGVETDARGYIKVDDQLRTTNPGIYAAGDC 310 (463)
T ss_pred CCEEEEEEEcCCE-EEEEEEeCCCceEEEeCEEEECcCCCcCCCCcCchhhCceECCCCcEeECcCCcCCCCCEEEeeec
Confidence 9999999876554 33433 2 345799999999999999998666788899999999999999999999999999999
Q ss_pred CCCCCChHHHHHhHHHHHHHHcCCCCCCCCCCCccEEEecCCceEEeeCCHHHHHhcCCCeEEEEeeccCcccccccCCC
Q 008860 383 TDRINLTPVALMEGGALAKTLFQAEPTKPDYSAVPSAVFSQPPIGQVGLSEEQAIQEYGDIDVFTANFRPLKATLSGLPD 462 (551)
Q Consensus 383 ~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~~~~~~~~~~~~~vGl~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 462 (551)
++.+.+++.|.+||+++|+||++......++..+|+.+|++|+++++|++|+||++.+.++.+...++....+++..+.+
T Consensus 311 ~~~~~~~~~A~~~g~~aa~ni~~~~~~~~~~~~~p~~~~~~p~ia~vG~te~~a~~~g~~~~~~~~~~~~~~~~~~~~~~ 390 (463)
T PRK06370 311 NGRGAFTHTAYNDARIVAANLLDGGRRKVSDRIVPYATYTDPPLARVGMTEAEARKSGRRVLVGTRPMTRVGRAVEKGET 390 (463)
T ss_pred CCCcccHHHHHHHHHHHHHHHhCCCCCCcccccCCeEEEcCCCcEeeeCCHHHHHHcCCCeEEEEEecCcchhHHhcCCC
Confidence 99999999999999999999998644556678899999999999999999999999888888888888888888777778
Q ss_pred cEEEEEEEECCCCeEEEEEEECCChhHHHHHHHHHHHCCCCHHHHccCcccCCCchHHHHHHHhhhhh
Q 008860 463 RIFMKLVLCAKTNKVLGLHMCGEDAPEIVQGFAVAVKAGLTKADFDATVGVHPTAAEEFVTLRTPTRK 530 (551)
Q Consensus 463 ~~~~kl~~~~~~~~ilG~~~~g~~~~e~i~~~~~~i~~~~~~~~l~~~~~~~pt~~e~~~~~~~~~~~ 530 (551)
++|+||++|++|++|||+|++|++++|+|+.+++||++++|++||.+++++|||++|.+.+.....++
T Consensus 391 ~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~a~~~~~~ 458 (463)
T PRK06370 391 QGFMKVVVDADTDRILGATILGVHGDEMIHEILDAMYAGAPYTTLSRAIHIHPTVSELIPTLAQALRR 458 (463)
T ss_pred CEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcCcccCCChHHHHHHHHHhhhh
Confidence 99999999999999999999999999999999999999999999999999999999998776555443
|
|
| >PTZ00058 glutathione reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-75 Score=616.45 Aligned_cols=441 Identities=37% Similarity=0.660 Sum_probs=391.6
Q ss_pred CCccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhhccCCCcc
Q 008860 71 YDFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDESNGFGWK 150 (551)
Q Consensus 71 ~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~ 150 (551)
.+|||+|||||+||++||..+++.|.+|+||| +..+||+|.|+||+|+|.++.+++..+..++...+|+.
T Consensus 47 ~~yDvvVIG~G~aG~~aA~~aa~~G~~ValIE----------k~~~GGtCln~GCiPsK~l~~~a~~~~~~~~~~~~Gi~ 116 (561)
T PTZ00058 47 MVYDLIVIGGGSGGMAAARRAARNKAKVALVE----------KDYLGGTCVNVGCVPKKIMFNAASIHDILENSRHYGFD 116 (561)
T ss_pred ccccEEEECcCHHHHHHHHHHHHcCCeEEEEe----------cccccccccccCCCCCchhhhhcccHHHHHHHHhcCCC
Confidence 46999999999999999999999999999999 66899999999999999999999988888888888876
Q ss_pred cCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEeEEEEecCCEEEE---------------------------
Q 008860 151 YGTEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIEGRGKIVDPHTVDV--------------------------- 203 (551)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~i~~~~v~v--------------------------- 203 (551)
.. ..+||..+.++..+.+..+...+...+++.+|+++.|++++.+++++.+
T Consensus 117 ~~--~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~G~a~f~~~~~v~v~~~~~~~~~~~~~~~~~~~v~~~~~~~ 194 (561)
T PTZ00058 117 TQ--FSFNLPLLVERRDKYIRRLNDIYRQNLKKDNVEYFEGKGSLLSENQVLIKKVSQVDGEADESDDDEVTIVSAGVSQ 194 (561)
T ss_pred cc--CccCHHHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEEEEEEecCCEEEeeccccccccccccccccceeeecccee
Confidence 32 4689999999999999988888888889999999999999999888752
Q ss_pred --cCEEEEeCeEEEcCCCCCCCCCCCCCCceecchhhhcCCCCCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccC
Q 008860 204 --DGKLYSARHILISVGGRPFIPDIPGSEYAIDSDAALDLPSKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVL 281 (551)
Q Consensus 204 --~g~~~~~d~lviAtG~~p~~p~i~g~~~~~~~~~~~~~~~~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l 281 (551)
+++.+.||+||||||++|..|++||.+.++++++++.+.. +++++|||+|++|+|+|..|.++|.+|+++++.++++
T Consensus 195 ~~~g~~i~ad~lVIATGS~P~~P~IpG~~~v~ts~~~~~l~~-pk~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~~~il 273 (561)
T PTZ00058 195 LDDGQVIEGKNILIAVGNKPIFPDVKGKEFTISSDDFFKIKE-AKRIGIAGSGYIAVELINVVNRLGAESYIFARGNRLL 273 (561)
T ss_pred cCCCcEEECCEEEEecCCCCCCCCCCCceeEEEHHHHhhccC-CCEEEEECCcHHHHHHHHHHHHcCCcEEEEEeccccc
Confidence 4567999999999999999999999887888888888766 8999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEECC-CeEEEeeEEEEecCcCCCCCCCCccccCeeecCC
Q 008860 282 RGFDEDIRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTNK-GTVDGFSHVMFATGRRPNTKNLGLEKVGVKMTKN 360 (551)
Q Consensus 282 ~~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~-G~~i~~d~vi~a~G~~p~~~~l~l~~~gl~~~~~ 360 (551)
+.+|+++.+.+.+.|++.||++++++.+.+++.++++.+.+.+.+ ++++++|.|++|+|++|+++.++++..++. +++
T Consensus 274 ~~~d~~i~~~l~~~L~~~GV~i~~~~~V~~I~~~~~~~v~v~~~~~~~~i~aD~VlvA~Gr~Pn~~~L~l~~~~~~-~~~ 352 (561)
T PTZ00058 274 RKFDETIINELENDMKKNNINIITHANVEEIEKVKEKNLTIYLSDGRKYEHFDYVIYCVGRSPNTEDLNLKALNIK-TPK 352 (561)
T ss_pred ccCCHHHHHHHHHHHHHCCCEEEeCCEEEEEEecCCCcEEEEECCCCEEEECCEEEECcCCCCCccccCcccccee-cCC
Confidence 999999999999999999999999999999987544324555544 457999999999999999998877777665 457
Q ss_pred CCeEeCCCCCCCCCcEEEeCcCCC----------------------------------CCCChHHHHHhHHHHHHHHcCC
Q 008860 361 GAIEVDEYSGTAVPSIWAVGDVTD----------------------------------RINLTPVALMEGGALAKTLFQA 406 (551)
Q Consensus 361 G~i~vd~~~~t~~~~vya~GD~~~----------------------------------~~~~~~~A~~~g~~aa~~i~g~ 406 (551)
|+|.||+++||++|||||+|||++ .+++++.|.+||+++|+||+|.
T Consensus 353 G~I~VDe~lqTs~p~IYA~GDv~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~la~~A~~~g~~aa~ni~g~ 432 (561)
T PTZ00058 353 GYIKVDDNQRTSVKHIYAVGDCCMVKKNQEIEDLNLLKLYNEEPYLKKKENTSGESYYNVQLTPVAINAGRLLADRLFGP 432 (561)
T ss_pred CeEEECcCCccCCCCEEEeEeccCccccccccccccccccccccccccccccccccccCcCchHHHHHHHHHHHHHHhCC
Confidence 899999999999999999999999 5789999999999999999986
Q ss_pred CCCCCCCCCccEEEecCCceEEeeCCHHHHHhcC--CCeEEEEeeccCccccccc----CCCcEEEEEEEECCCCeEEEE
Q 008860 407 EPTKPDYSAVPSAVFSQPPIGQVGLSEEQAIQEY--GDIDVFTANFRPLKATLSG----LPDRIFMKLVLCAKTNKVLGL 480 (551)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~vGl~~~~a~~~~--~~~~~~~~~~~~~~~~~~~----~~~~~~~kl~~~~~~~~ilG~ 480 (551)
.....++..+|+++|++|+++++|+||+||++++ .++.+....+....++... ....+|+|+++|+++|+|||+
T Consensus 433 ~~~~~~~~~ip~~vft~peiA~vGlte~eA~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Kli~~~~t~~ILG~ 512 (561)
T PTZ00058 433 FSRTTNYKLIPSVIFSHPPIGTIGLSEQEAIDIYGKENVKIYESRFTNLFFSVYDMDPAQKEKTYLKLVCVGKEELIKGL 512 (561)
T ss_pred CCcccCCCCCCeEEeCCchheeeeCCHHHHHHhcCCCcEEEEEeecchhhhhhhcccccCCCCeEEEEEEECCCCEEEEE
Confidence 4444567889999999999999999999999873 2577776677665554322 346799999999999999999
Q ss_pred EEECCChhHHHHHHHHHHHCCCCHHHHccCcccCCCchHHHHHHH
Q 008860 481 HMCGEDAPEIVQGFAVAVKAGLTKADFDATVGVHPTAAEEFVTLR 525 (551)
Q Consensus 481 ~~~g~~~~e~i~~~~~~i~~~~~~~~l~~~~~~~pt~~e~~~~~~ 525 (551)
|++|++|.|+|+.+++||++++|++||.+++++|||++|++.++.
T Consensus 513 ~ivG~~a~elI~~~a~ai~~~~t~~dl~~~~~~hPt~~e~~~~~~ 557 (561)
T PTZ00058 513 HIVGLNADEILQGFAVALKMNATKADFDETIPIHPTAAEEFVTMA 557 (561)
T ss_pred EEECCCHHHHHHHHHHHHHcCCCHHHHhhcccCCCChHHHHHHhc
Confidence 999999999999999999999999999999999999999987653
|
|
| >KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-75 Score=555.04 Aligned_cols=446 Identities=30% Similarity=0.494 Sum_probs=412.5
Q ss_pred CCccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhh--ccCCC
Q 008860 71 YDFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDE--SNGFG 148 (551)
Q Consensus 71 ~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~--~~~~g 148 (551)
.+|||+|||+||+|..||+.+++.|++.+.||+ ++.+||+|+|.||+|||.|++-+++.+..++ +..+|
T Consensus 38 ~d~DvvvIG~GpGGyvAAikAaQlGlkTacvEk---------r~~LGGTcLnvGcIPSKALL~nSh~yh~~q~~~~~~rG 108 (506)
T KOG1335|consen 38 NDYDVVVIGGGPGGYVAAIKAAQLGLKTACVEK---------RGTLGGTCLNVGCIPSKALLNNSHLYHEAQHEDFASRG 108 (506)
T ss_pred ccCCEEEECCCCchHHHHHHHHHhcceeEEEec---------cCccCceeeeccccccHHHhhhhHHHHHHhhhHHHhcC
Confidence 369999999999999999999999999999994 7999999999999999999999888777664 77888
Q ss_pred cccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEeEEEEecCCEEEE---cC--EEEEeCeEEEcCCCCCCC
Q 008860 149 WKYGTEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIEGRGKIVDPHTVDV---DG--KLYSARHILISVGGRPFI 223 (551)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~i~~~~v~v---~g--~~~~~d~lviAtG~~p~~ 223 (551)
+... ...+|.+.++......++.+...+...+++.+|+++.|.+.+++++++.+ ++ ..+.++++||||||. .
T Consensus 109 i~vs-~~~~dl~~~~~~k~~~vk~Lt~gi~~lfkknkV~~~kG~gsf~~p~~V~v~k~dg~~~ii~aKnIiiATGSe--V 185 (506)
T KOG1335|consen 109 IDVS-SVSLDLQAMMKAKDNAVKQLTGGIENLFKKNKVTYVKGFGSFLDPNKVSVKKIDGEDQIIKAKNIIIATGSE--V 185 (506)
T ss_pred cccc-ceecCHHHHHHHHHHHHHHHhhHHHHHhhhcCeEEEeeeEeecCCceEEEeccCCCceEEeeeeEEEEeCCc--c
Confidence 8766 67899999999999999999999999999999999999999999999998 33 578999999999985 3
Q ss_pred CCCCCC----CceecchhhhcCCCCCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCCCCCHHHHHHHHHHHHhc
Q 008860 224 PDIPGS----EYAIDSDAALDLPSKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRDFVAEQMSLR 299 (551)
Q Consensus 224 p~i~g~----~~~~~~~~~~~~~~~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~ 299 (551)
+++||+ +.+.+++..+.+.+.|++++|||+|++|+|++..+.++|.+||+++-.+.+.+.+|.++++..++.|+.+
T Consensus 186 ~~~PGI~IDekkIVSStgALsL~~vPk~~~viG~G~IGLE~gsV~~rLGseVT~VEf~~~i~~~mD~Eisk~~qr~L~kQ 265 (506)
T KOG1335|consen 186 TPFPGITIDEKKIVSSTGALSLKEVPKKLTVIGAGYIGLEMGSVWSRLGSEVTVVEFLDQIGGVMDGEISKAFQRVLQKQ 265 (506)
T ss_pred CCCCCeEecCceEEecCCccchhhCcceEEEEcCceeeeehhhHHHhcCCeEEEEEehhhhccccCHHHHHHHHHHHHhc
Confidence 345564 3588999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEcCcccEEEEEcCCceEEEEECC---C--eEEEeeEEEEecCcCCCCCCCCccccCeeecCCCCeEeCCCCCCCCC
Q 008860 300 GIEFHTEESPQAILKSTDGSLSVKTNK---G--TVDGFSHVMFATGRRPNTKNLGLEKVGVKMTKNGAIEVDEYSGTAVP 374 (551)
Q Consensus 300 Gv~i~~~~~v~~i~~~~~~~~~V~~~~---G--~~i~~d~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~t~~~ 374 (551)
|++|+++++|..++.++++.+.|++.+ + ++++||.+++++|++|.+..|++++.|++.|.+|.|.||..++|.+|
T Consensus 266 gikF~l~tkv~~a~~~~dg~v~i~ve~ak~~k~~tle~DvlLVsiGRrP~t~GLgle~iGi~~D~r~rv~v~~~f~t~vP 345 (506)
T KOG1335|consen 266 GIKFKLGTKVTSATRNGDGPVEIEVENAKTGKKETLECDVLLVSIGRRPFTEGLGLEKIGIELDKRGRVIVNTRFQTKVP 345 (506)
T ss_pred CceeEeccEEEEeeccCCCceEEEEEecCCCceeEEEeeEEEEEccCcccccCCChhhcccccccccceeccccccccCC
Confidence 999999999999999888657776643 2 37999999999999999999999999999999999999999999999
Q ss_pred cEEEeCcCCCCCCChHHHHHhHHHHHHHHcCCCCCCCCCCCccEEEecCCceEEeeCCHHHHHhcCCCeEEEEeeccCcc
Q 008860 375 SIWAVGDVTDRINLTPVALMEGGALAKTLFQAEPTKPDYSAVPSAVFSQPPIGQVGLSEEQAIQEYGDIDVFTANFRPLK 454 (551)
Q Consensus 375 ~vya~GD~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~~~~~~~~~~~~~vGl~~~~a~~~~~~~~~~~~~~~~~~ 454 (551)
+||++||++.+|++++.|..||-.+.+.|.|+.. ..+|..+|.+.|++||+++||.||+++++.+.++.+.+.+|..+.
T Consensus 346 ~i~~IGDv~~gpMLAhkAeeegI~~VE~i~g~~~-hv~ynciP~v~ythPEvawVG~TEeqlkeegi~y~vgkfpF~aNs 424 (506)
T KOG1335|consen 346 HIYAIGDVTLGPMLAHKAEEEGIAAVEGIAGGHG-HVDYNCIPSVVYTHPEVAWVGKTEEQLKEEGIKYKVGKFPFSANS 424 (506)
T ss_pred ceEEecccCCcchhhhhhhhhchhheeeecccCc-ccccCCCCceeecccceeeeccchhhHHhcCcceEeeeccccccc
Confidence 9999999999999999999999999999998654 467888999999999999999999999999999999999999999
Q ss_pred cccccCCCcEEEEEEEECCCCeEEEEEEECCChhHHHHHHHHHHHCCCCHHHHccCcccCCCchHHHHHHHhhhh
Q 008860 455 ATLSGLPDRIFMKLVLCAKTNKVLGLHMCGEDAPEIVQGFAVAVKAGLTKADFDATVGVHPTAAEEFVTLRTPTR 529 (551)
Q Consensus 455 ~~~~~~~~~~~~kl~~~~~~~~ilG~~~~g~~~~e~i~~~~~~i~~~~~~~~l~~~~~~~pt~~e~~~~~~~~~~ 529 (551)
++....+..||+|+++|++|++|||+||+|++|.|||++.++||+.|.+.+|+++.+|+|||+||++.+...+|.
T Consensus 425 Raktn~d~eg~vKvl~d~~tdkiLGvHiigp~AgEli~EA~lAieyGasaeDvarvchaHPTlSEa~kEa~~aA~ 499 (506)
T KOG1335|consen 425 RAKTNNDTEGFVKVLADKETDKILGVHIIGPNAGELIHEASLAIEYGASAEDVARVCHAHPTLSEAFKEANMAAY 499 (506)
T ss_pred hhhccCCccceeEEEecCCCCcEEEEEEecCCHHHHHHHHHHHHHhCccHHHHhhccCCCCcHHHHHHHHHHHhh
Confidence 998889999999999999999999999999999999999999999999999999999999999999887655543
|
|
| >PRK07846 mycothione reductase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-74 Score=604.85 Aligned_cols=438 Identities=29% Similarity=0.476 Sum_probs=393.0
Q ss_pred CccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhhccCCCccc
Q 008860 72 DFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDESNGFGWKY 151 (551)
Q Consensus 72 ~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~~ 151 (551)
+||++||||||+|..||.++ .|.+|+||| ++.+||+|.|+||+|+|.|+..++..+..++...||+..
T Consensus 1 ~yD~vVIG~G~~g~~aa~~~--~G~~V~lie----------~~~~GGtC~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~ 68 (451)
T PRK07846 1 HYDLIIIGTGSGNSILDERF--ADKRIAIVE----------KGTFGGTCLNVGCIPTKMFVYAADVARTIREAARLGVDA 68 (451)
T ss_pred CCCEEEECCCHHHHHHHHHH--CCCeEEEEe----------CCCCCCcccCcCcchhHHHHHHHHHHHHHHHHHhCCccC
Confidence 48999999999999988763 599999999 778999999999999999999999999888888888864
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHH-HHHH-HHhCCeEEEEeEEEEecCCEEEE-cCEEEEeCeEEEcCCCCCCCCCCCC
Q 008860 152 GTEPQHDWSTLIANKNAELQRLTGI-YKNI-LINAGITLIEGRGKIVDPHTVDV-DGKLYSARHILISVGGRPFIPDIPG 228 (551)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~v~~~~~~~~~i~~~~v~v-~g~~~~~d~lviAtG~~p~~p~i~g 228 (551)
. ...+||..+.++....++++... .... ++..+++++.+++.+++++++.+ +++.+.||++|||||++|+.|++||
T Consensus 69 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a~~~~~~~V~v~~g~~~~~d~lViATGs~p~~p~i~g 147 (451)
T PRK07846 69 E-LDGVRWPDIVSRVFGRIDPIAAGGEEYRGRDTPNIDVYRGHARFIGPKTLRTGDGEEITADQVVIAAGSRPVIPPVIA 147 (451)
T ss_pred C-CCcCCHHHHHHHHHHHHHHHhccchhhhhhhhCCcEEEEEEEEEecCCEEEECCCCEEEeCEEEEcCCCCCCCCCCCC
Confidence 3 45789999999998888887553 4444 77889999999999999999999 5678999999999999999999998
Q ss_pred CC--ceecchhhhcCCCCCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCCCCCHHHHHHHHHHHHhcCcEEEcC
Q 008860 229 SE--YAIDSDAALDLPSKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRDFVAEQMSLRGIEFHTE 306 (551)
Q Consensus 229 ~~--~~~~~~~~~~~~~~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~~~ 306 (551)
.+ .++++++++.+...+++++|||+|++|+|+|..|+++|.+|+++++.+.+++.+++++.+.+.+.+ +.||+++++
T Consensus 148 ~~~~~~~~~~~~~~l~~~~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~ll~~~d~~~~~~l~~l~-~~~v~i~~~ 226 (451)
T PRK07846 148 DSGVRYHTSDTIMRLPELPESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSGRLLRHLDDDISERFTELA-SKRWDVRLG 226 (451)
T ss_pred cCCccEEchHHHhhhhhcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCccccccCHHHHHHHHHHH-hcCeEEEeC
Confidence 64 357888888888889999999999999999999999999999999999999889999998887755 568999999
Q ss_pred cccEEEEEcCCceEEEEECCCeEEEeeEEEEecCcCCCCCCCCccccCeeecCCCCeEeCCCCCCCCCcEEEeCcCCCCC
Q 008860 307 ESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNTKNLGLEKVGVKMTKNGAIEVDEYSGTAVPSIWAVGDVTDRI 386 (551)
Q Consensus 307 ~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~t~~~~vya~GD~~~~~ 386 (551)
+++++++.++++ +.+.+.+|+++++|.|++|+|++|+++++++++.+++++++|+|.||+++||++|||||+|||++.+
T Consensus 227 ~~v~~i~~~~~~-v~v~~~~g~~i~~D~vl~a~G~~pn~~~l~~~~~gl~~~~~G~i~Vd~~~~Ts~p~IyA~GD~~~~~ 305 (451)
T PRK07846 227 RNVVGVSQDGSG-VTLRLDDGSTVEADVLLVATGRVPNGDLLDAAAAGVDVDEDGRVVVDEYQRTSAEGVFALGDVSSPY 305 (451)
T ss_pred CEEEEEEEcCCE-EEEEECCCcEeecCEEEEEECCccCccccCchhcCceECCCCcEeECCCcccCCCCEEEEeecCCCc
Confidence 999999876554 6678888889999999999999999998877889999999999999999999999999999999998
Q ss_pred CChHHHHHhHHHHHHHHcCCC-CCCCCCCCccEEEecCCceEEeeCCHHHHHhcCCCeEEEEeeccCcccccccCCCcEE
Q 008860 387 NLTPVALMEGGALAKTLFQAE-PTKPDYSAVPSAVFSQPPIGQVGLSEEQAIQEYGDIDVFTANFRPLKATLSGLPDRIF 465 (551)
Q Consensus 387 ~~~~~A~~~g~~aa~~i~g~~-~~~~~~~~~~~~~~~~~~~~~vGl~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (551)
++++.|.+||+++++||++.. ....++..+|+.+|++|+++++|+||+||++.+.++.+...++....+++.....++|
T Consensus 306 ~l~~~A~~~g~~~a~ni~~~~~~~~~~~~~~p~~if~~p~ia~vGlte~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~ 385 (451)
T PRK07846 306 QLKHVANHEARVVQHNLLHPDDLIASDHRFVPAAVFTHPQIASVGLTENEARAAGLDITVKVQNYGDVAYGWAMEDTTGF 385 (451)
T ss_pred cChhHHHHHHHHHHHHHcCCCCccccCCCCCCeEEECCCCcEeEeCCHHHHHhcCCCEEEEEEecCcchhhhhCCCCceE
Confidence 999999999999999999763 2345677899999999999999999999999887888888888887777766777899
Q ss_pred EEEEEECCCCeEEEEEEECCChhHHHHHHHHHHHCCCCHHHHccC-cccCCCchHHHHHH
Q 008860 466 MKLVLCAKTNKVLGLHMCGEDAPEIVQGFAVAVKAGLTKADFDAT-VGVHPTAAEEFVTL 524 (551)
Q Consensus 466 ~kl~~~~~~~~ilG~~~~g~~~~e~i~~~~~~i~~~~~~~~l~~~-~~~~pt~~e~~~~~ 524 (551)
+||++|++|++|||+|++|+++.|+|+.+++||++++|++||..+ +++|||++|.+.+.
T Consensus 386 ~Kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~hPt~~e~~~~a 445 (451)
T PRK07846 386 VKLIADRDTGRLLGAHIIGPQASTLIQPLIQAMSFGLDAREMARGQYWIHPALPEVVENA 445 (451)
T ss_pred EEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhhCCCccCCcHHHHHHHH
Confidence 999999999999999999999999999999999999999999986 57999999987653
|
|
| >TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-74 Score=603.96 Aligned_cols=455 Identities=38% Similarity=0.676 Sum_probs=396.4
Q ss_pred CccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhhccCCCccc
Q 008860 72 DFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDESNGFGWKY 151 (551)
Q Consensus 72 ~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~~ 151 (551)
+|||+|||||++|+.+|..+++.|.+|+|||++... .......+||+|.|+||+|+|.|+..++......+...||+..
T Consensus 2 ~yDvvVIG~G~aG~~aA~~aa~~G~~v~lie~~~~~-~~~~~~~~GGtc~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~ 80 (484)
T TIGR01438 2 DYDLIVIGGGSGGLAAAKEAADYGAKVMLLDFVTPT-PLGTRWGIGGTCVNVGCIPKKLMHQAALLGQALKDSRNYGWNV 80 (484)
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCC-CCCcceeccccccccCcCchhHHHHHHHHHHHHhhhhhcCccc
Confidence 589999999999999999999999999999931100 0011125999999999999999999999888877778888865
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEeEEEEecCCEEEE---cC--EEEEeCeEEEcCCCCCCCCCC
Q 008860 152 GTEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIEGRGKIVDPHTVDV---DG--KLYSARHILISVGGRPFIPDI 226 (551)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~i~~~~v~v---~g--~~~~~d~lviAtG~~p~~p~i 226 (551)
.....+||..+.++..+.+..+...+...++..+|+++.|.+.+++++++.+ ++ ..+.||+||||||++|+.|++
T Consensus 81 ~~~~~~d~~~~~~~~~~~v~~~~~~~~~~~~~~~v~~i~G~a~f~~~~~v~v~~~~g~~~~~~~d~lVIATGs~p~~p~i 160 (484)
T TIGR01438 81 EETVKHDWNRLSEAVQNHIGSLNWGYRVALREKKVNYENAYAEFVDKHRIKATNKKGKEKIYSAERFLIATGERPRYPGI 160 (484)
T ss_pred CCCcccCHHHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEEEEEEcCCCEEEEeccCCCceEEEeCEEEEecCCCCCCCCC
Confidence 4335789999999999999998888888899999999999999999999887 22 479999999999999999999
Q ss_pred CCC-CceecchhhhcCCCCCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCCCCCHHHHHHHHHHHHhcCcEEEc
Q 008860 227 PGS-EYAIDSDAALDLPSKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRDFVAEQMSLRGIEFHT 305 (551)
Q Consensus 227 ~g~-~~~~~~~~~~~~~~~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~~ 305 (551)
||. +..+++++++.+...+++++|||+|++|+|+|..|+++|.+|+++.+ +.+++.+|+++.+.+++.|+++||++++
T Consensus 161 pG~~~~~~~~~~~~~~~~~~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~-~~~l~~~d~~~~~~l~~~L~~~gV~i~~ 239 (484)
T TIGR01438 161 PGAKELCITSDDLFSLPYCPGKTLVVGASYVALECAGFLAGIGLDVTVMVR-SILLRGFDQDCANKVGEHMEEHGVKFKR 239 (484)
T ss_pred CCccceeecHHHhhcccccCCCEEEECCCHHHHHHHHHHHHhCCcEEEEEe-cccccccCHHHHHHHHHHHHHcCCEEEe
Confidence 997 45678888888888889999999999999999999999999999998 5778889999999999999999999999
Q ss_pred CcccEEEEEcCCceEEEEECCC---eEEEeeEEEEecCcCCCCCCCCccccCeeecC-CCCeEeCCCCCCCCCcEEEeCc
Q 008860 306 EESPQAILKSTDGSLSVKTNKG---TVDGFSHVMFATGRRPNTKNLGLEKVGVKMTK-NGAIEVDEYSGTAVPSIWAVGD 381 (551)
Q Consensus 306 ~~~v~~i~~~~~~~~~V~~~~G---~~i~~d~vi~a~G~~p~~~~l~l~~~gl~~~~-~G~i~vd~~~~t~~~~vya~GD 381 (551)
++.+.++...++. +.+++.++ +++++|.|++|+|+.||++++++++.++++++ +|+|.||+++||++|+|||+||
T Consensus 240 ~~~v~~v~~~~~~-~~v~~~~~~~~~~i~~D~vl~a~G~~pn~~~l~l~~~gv~~~~~~G~I~Vd~~~~Ts~p~IyA~GD 318 (484)
T TIGR01438 240 QFVPIKVEQIEAK-VKVTFTDSTNGIEEEYDTVLLAIGRDACTRKLNLENVGVKINKKTGKIPADEEEQTNVPYIYAVGD 318 (484)
T ss_pred CceEEEEEEcCCe-EEEEEecCCcceEEEeCEEEEEecCCcCCCcCCcccccceecCcCCeEecCCCcccCCCCEEEEEE
Confidence 9999999876544 56666555 37999999999999999998888899999875 4899999999999999999999
Q ss_pred CCC-CCCChHHHHHhHHHHHHHHcCCCCCCCCCCCccEEEecCCceEEeeCCHHHHHhcC-C-CeEEEEeeccCcccccc
Q 008860 382 VTD-RINLTPVALMEGGALAKTLFQAEPTKPDYSAVPSAVFSQPPIGQVGLSEEQAIQEY-G-DIDVFTANFRPLKATLS 458 (551)
Q Consensus 382 ~~~-~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~~~~~~~~~~~~~vGl~~~~a~~~~-~-~~~~~~~~~~~~~~~~~ 458 (551)
|+. .+.+++.|.+||+++++||++......++..+|+.+|++|++++||+||+||++++ . .+.+...++.+..+++.
T Consensus 319 v~~~~~~l~~~A~~~g~~aa~~i~~~~~~~~~~~~~p~~i~~~p~ia~vGlte~~a~~~~g~~~~~~~~~~~~~~~~~~~ 398 (484)
T TIGR01438 319 ILEDKQELTPVAIQAGRLLAQRLFSGSTVICDYENVPTTVFTPLEYGACGLSEEKAVEKFGEENIEVFHSYFWPLEWTIP 398 (484)
T ss_pred ecCCCccchHHHHHHHHHHHHHHhcCCCcccccccCCeEEeCCCceeeecCCHHHHHHhcCCCcEEEEEeecchhhhHhh
Confidence 996 57889999999999999999865545677889999999999999999999999873 3 57777777776666554
Q ss_pred cCC--CcEEEEEEEE-CCCCeEEEEEEECCChhHHHHHHHHHHHCCCCHHHHccCcccCCCchHHHHHHHhhhh
Q 008860 459 GLP--DRIFMKLVLC-AKTNKVLGLHMCGEDAPEIVQGFAVAVKAGLTKADFDATVGVHPTAAEEFVTLRTPTR 529 (551)
Q Consensus 459 ~~~--~~~~~kl~~~-~~~~~ilG~~~~g~~~~e~i~~~~~~i~~~~~~~~l~~~~~~~pt~~e~~~~~~~~~~ 529 (551)
... +.+|+||+++ +++++|||+|++|++|.|+|+.+++||++++|++||.+++++|||++|.+.++...+|
T Consensus 399 ~~~~~~~g~~Kli~~~~~t~~ILG~~ivg~~a~e~I~~~a~ai~~~~t~~dl~~~~~~hPt~sE~~~~~~~~~~ 472 (484)
T TIGR01438 399 SRDNSNKCYAKAVCNRKENERVVGFHVVGPNAGEVTQGFAAALRCGLTKKDLDNTIGIHPVCAEVFTTLSVTKR 472 (484)
T ss_pred CCCccCCcEEEEEEecCCCCeEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhhhhcCCCChHHHHHHhhhhhh
Confidence 433 6789999996 5699999999999999999999999999999999999999999999999888765543
|
This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity. |
| >PRK06467 dihydrolipoamide dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-73 Score=601.76 Aligned_cols=444 Identities=28% Similarity=0.441 Sum_probs=398.9
Q ss_pred CCCCccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhhccCCC
Q 008860 69 SHYDFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDESNGFG 148 (551)
Q Consensus 69 ~~~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g 148 (551)
|+.+|||+||||||||++||.+|++.|++|+|||+ ...+||+|.|+||+|+|.++..+...+..++...+|
T Consensus 1 ~~~~~DvvVIG~GpaG~~aA~~aa~~G~~V~lie~---------~~~~GG~c~n~gciP~K~l~~~a~~~~~~~~~~~~g 71 (471)
T PRK06467 1 MEIKTQVVVLGAGPAGYSAAFRAADLGLETVCVER---------YSTLGGVCLNVGCIPSKALLHVAKVIEEAKALAEHG 71 (471)
T ss_pred CCccceEEEECCCHHHHHHHHHHHHCCCcEEEEec---------CCcccccccCCCcccHHHHHHHHHHHHHHhhhhhcC
Confidence 45679999999999999999999999999999992 347999999999999999999998888888888888
Q ss_pred cccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEeEEEEecCCEEEE---cC--EEEEeCeEEEcCCCCCCC
Q 008860 149 WKYGTEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIEGRGKIVDPHTVDV---DG--KLYSARHILISVGGRPFI 223 (551)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~i~~~~v~v---~g--~~~~~d~lviAtG~~p~~ 223 (551)
+... ...++|..+..+.+..++++...+...+++.+|+++.+++.+++++++.+ ++ .++.||+||||||++|+.
T Consensus 72 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~g~a~~~~~~~v~v~~~~g~~~~~~~d~lViATGs~p~~ 150 (471)
T PRK06467 72 IVFG-EPKIDIDKMRARKEKVVKQLTGGLAGMAKGRKVTVVNGLGKFTGGNTLEVTGEDGKTTVIEFDNAIIAAGSRPIQ 150 (471)
T ss_pred cccC-CCCcCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEEecCCCceEEEEcCEEEEeCCCCCCC
Confidence 8654 45789999999999888888888888889999999999999999998877 34 479999999999999974
Q ss_pred -CCCCCC-CceecchhhhcCCCCCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCCCCCHHHHHHHHHHHHhcCc
Q 008860 224 -PDIPGS-EYAIDSDAALDLPSKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRDFVAEQMSLRGI 301 (551)
Q Consensus 224 -p~i~g~-~~~~~~~~~~~~~~~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~Gv 301 (551)
|.+++. +.++++++.+.+...+++++|||+|++|+|+|..|+++|.+||++++.+++++.+++++.+.+.+.|+++ +
T Consensus 151 ~p~~~~~~~~v~~~~~~~~~~~~~~~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~~il~~~d~~~~~~~~~~l~~~-v 229 (471)
T PRK06467 151 LPFIPHDDPRIWDSTDALELKEVPKRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQVIPAADKDIVKVFTKRIKKQ-F 229 (471)
T ss_pred CCCCCCCCCcEEChHHhhccccCCCeEEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCCcCCHHHHHHHHHHHhhc-e
Confidence 445553 3578888998888889999999999999999999999999999999999999999999999999999998 9
Q ss_pred EEEcCcccEEEEEcCCceEEEEECC--C--eEEEeeEEEEecCcCCCCCCCCccccCeeecCCCCeEeCCCCCCCCCcEE
Q 008860 302 EFHTEESPQAILKSTDGSLSVKTNK--G--TVDGFSHVMFATGRRPNTKNLGLEKVGVKMTKNGAIEVDEYSGTAVPSIW 377 (551)
Q Consensus 302 ~i~~~~~v~~i~~~~~~~~~V~~~~--G--~~i~~d~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~t~~~~vy 377 (551)
++++++.|++++.++++ +.+.+.+ + +++++|.||+|+|++|+++++.++.++++++++|+|.||+++||++|+||
T Consensus 230 ~i~~~~~v~~i~~~~~~-~~v~~~~~~~~~~~i~~D~vi~a~G~~pn~~~l~~~~~gl~~~~~G~I~Vd~~~~t~~p~Vy 308 (471)
T PRK06467 230 NIMLETKVTAVEAKEDG-IYVTMEGKKAPAEPQRYDAVLVAVGRVPNGKLLDAEKAGVEVDERGFIRVDKQCRTNVPHIF 308 (471)
T ss_pred EEEcCCEEEEEEEcCCE-EEEEEEeCCCcceEEEeCEEEEeecccccCCccChhhcCceECCCCcEeeCCCcccCCCCEE
Confidence 99999999999876555 5565543 2 36999999999999999998778889999999999999999999999999
Q ss_pred EeCcCCCCCCChHHHHHhHHHHHHHHcCCCCCCCCCCCccEEEecCCceEEeeCCHHHHHhcCCCeEEEEeeccCccccc
Q 008860 378 AVGDVTDRINLTPVALMEGGALAKTLFQAEPTKPDYSAVPSAVFSQPPIGQVGLSEEQAIQEYGDIDVFTANFRPLKATL 457 (551)
Q Consensus 378 a~GD~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~~~~~~~~~~~~~vGl~~~~a~~~~~~~~~~~~~~~~~~~~~ 457 (551)
|+|||++.+.+++.|.+||+++|+||+|.. ...++..+|+++|++|++++||+||+||++++.++.+...++....+++
T Consensus 309 AiGDv~~~~~la~~A~~eG~~aa~~i~g~~-~~~~~~~~p~~~~~~p~ia~vGlte~ea~~~g~~~~~~~~~~~~~~~~~ 387 (471)
T PRK06467 309 AIGDIVGQPMLAHKGVHEGHVAAEVIAGKK-HYFDPKVIPSIAYTEPEVAWVGLTEKEAKEEGIEYETATFPWAASGRAI 387 (471)
T ss_pred EehhhcCCcccHHHHHHHHHHHHHHHcCCC-CCCCCCCCCeEEECCCceeEEECCHHHHHhcCCCeEEEEEecCcchhhh
Confidence 999999988999999999999999999854 3467788999999999999999999999998888888888888777777
Q ss_pred ccCCCcEEEEEEEECCCCeEEEEEEECCChhHHHHHHHHHHHCCCCHHHHccCcccCCCchHHHHHHH
Q 008860 458 SGLPDRIFMKLVLCAKTNKVLGLHMCGEDAPEIVQGFAVAVKAGLTKADFDATVGVHPTAAEEFVTLR 525 (551)
Q Consensus 458 ~~~~~~~~~kl~~~~~~~~ilG~~~~g~~~~e~i~~~~~~i~~~~~~~~l~~~~~~~pt~~e~~~~~~ 525 (551)
..+.+++|+||++|++|++|||+|++|+++.|+|+.+++||++++|++||.+++++|||++|.+.+..
T Consensus 388 ~~~~~~g~~kli~d~~t~~ilG~~~vg~~a~e~i~~~a~ai~~~~t~~~l~~~~~~hPt~~e~~~~a~ 455 (471)
T PRK06467 388 ASDCADGMTKLIFDKETHRVLGGAIVGTNAGELLGEIGLAIEMGCDAEDIALTIHAHPTLHESVGLAA 455 (471)
T ss_pred hCCCCceEEEEEEECCCCeEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhcccCCCChHHHHHHHH
Confidence 67778999999999999999999999999999999999999999999999999999999999877533
|
|
| >PTZ00153 lipoamide dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-73 Score=608.47 Aligned_cols=453 Identities=26% Similarity=0.416 Sum_probs=394.0
Q ss_pred CccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhhc---cCCC
Q 008860 72 DFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDES---NGFG 148 (551)
Q Consensus 72 ~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~---~~~g 148 (551)
+|||+|||+|++|+.||..+++.|++|+|||+ .+..+||+|.|+||+|+|.|+..++....+++. ..||
T Consensus 116 ~yDviVIG~G~gG~~aA~~aa~~G~kV~lie~--------~~~~lGGtCvn~GCiPsK~l~~~a~~~~~~~~~~~~~~~G 187 (659)
T PTZ00153 116 EYDVGIIGCGVGGHAAAINAMERGLKVIIFTG--------DDDSIGGTCVNVGCIPSKALLYATGKYRELKNLAKLYTYG 187 (659)
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCcEEEEeC--------CCCccccceeEeCCcchHHHHHHHHHHHHHHhccccccCC
Confidence 79999999999999999999999999999991 123799999999999999999999988887765 4677
Q ss_pred ccc-----------------CCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhCC-------eEEEEeEEEEecCCEEEE-
Q 008860 149 WKY-----------------GTEPQHDWSTLIANKNAELQRLTGIYKNILINAG-------ITLIEGRGKIVDPHTVDV- 203 (551)
Q Consensus 149 ~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------v~~~~~~~~~i~~~~v~v- 203 (551)
+.. .....+||..+.++.+..++.+...+...+++.+ ++++.+.+.+++++++.+
T Consensus 188 i~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~G~a~f~~~~~v~v~ 267 (659)
T PTZ00153 188 IYTNAFKNGKNDPVERNQLVADTVQIDITKLKEYTQSVIDKLRGGIENGLKSKKFCKNSEHVQVIYERGHIVDKNTIKSE 267 (659)
T ss_pred eeeccccccccccccccccccccCccCHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCceEEEEeEEEEecCCeEEEc
Confidence 751 1345789999999999999999888888888764 899999999999999888
Q ss_pred -cCEEEEeCeEEEcCCCCCCCCCCCCCC--ceecchhhhcCCCCCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCcc
Q 008860 204 -DGKLYSARHILISVGGRPFIPDIPGSE--YAIDSDAALDLPSKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKV 280 (551)
Q Consensus 204 -~g~~~~~d~lviAtG~~p~~p~i~g~~--~~~~~~~~~~~~~~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~ 280 (551)
+++++.||+||||||++|..|++++.+ .++++++++.++..+++++|||+|++|+|+|..|.++|.+||++++.+++
T Consensus 268 ~~g~~i~ad~lIIATGS~P~~P~~~~~~~~~V~ts~d~~~l~~lpk~VvIVGgG~iGvE~A~~l~~~G~eVTLIe~~~~l 347 (659)
T PTZ00153 268 KSGKEFKVKNIIIATGSTPNIPDNIEVDQKSVFTSDTAVKLEGLQNYMGIVGMGIIGLEFMDIYTALGSEVVSFEYSPQL 347 (659)
T ss_pred cCCEEEECCEEEEcCCCCCCCCCCCCCCCCcEEehHHhhhhhhcCCceEEECCCHHHHHHHHHHHhCCCeEEEEeccCcc
Confidence 678899999999999999998866643 48888998888888999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHH-HhcCcEEEcCcccEEEEEcCCc-eEEEEECC-------C--------eEEEeeEEEEecCcCC
Q 008860 281 LRGFDEDIRDFVAEQM-SLRGIEFHTEESPQAILKSTDG-SLSVKTNK-------G--------TVDGFSHVMFATGRRP 343 (551)
Q Consensus 281 l~~~~~~~~~~l~~~l-~~~Gv~i~~~~~v~~i~~~~~~-~~~V~~~~-------G--------~~i~~d~vi~a~G~~p 343 (551)
++.+++++.+.+.+.+ +++||++++++.|++++.++++ .+.+.+.+ + +++++|.|++|+|++|
T Consensus 348 l~~~d~eis~~l~~~ll~~~GV~I~~~~~V~~I~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~i~aD~VlvAtGr~P 427 (659)
T PTZ00153 348 LPLLDADVAKYFERVFLKSKPVRVHLNTLIEYVRAGKGNQPVIIGHSERQTGESDGPKKNMNDIKETYVDSCLVATGRKP 427 (659)
T ss_pred cccCCHHHHHHHHHHHhhcCCcEEEcCCEEEEEEecCCceEEEEEEeccccccccccccccccceEEEcCEEEEEECccc
Confidence 9999999999998876 6799999999999999876543 24454321 1 2699999999999999
Q ss_pred CCCCCCccccCeeecCCCCeEeCCCCCCC------CCcEEEeCcCCCCCCChHHHHHhHHHHHHHHcCCC----------
Q 008860 344 NTKNLGLEKVGVKMTKNGAIEVDEYSGTA------VPSIWAVGDVTDRINLTPVALMEGGALAKTLFQAE---------- 407 (551)
Q Consensus 344 ~~~~l~l~~~gl~~~~~G~i~vd~~~~t~------~~~vya~GD~~~~~~~~~~A~~~g~~aa~~i~g~~---------- 407 (551)
|++.++++..++++++ |+|.||++|||+ +|||||+|||++.+++++.|.+||+++++||+|..
T Consensus 428 nt~~L~l~~~gi~~~~-G~I~VDe~lqTs~~~~~~v~~IYAiGDv~g~~~La~~A~~qg~~aa~ni~g~~~~~~~~~~~~ 506 (659)
T PTZ00153 428 NTNNLGLDKLKIQMKR-GFVSVDEHLRVLREDQEVYDNIFCIGDANGKQMLAHTASHQALKVVDWIEGKGKENVNINVEN 506 (659)
T ss_pred CCccCCchhcCCcccC-CEEeECCCCCcCCCCCCCCCCEEEEEecCCCccCHHHHHHHHHHHHHHHcCCCcccccccccc
Confidence 9998888888988864 899999999997 69999999999999999999999999999999852
Q ss_pred --CCCCCCCCccEEEecCCceEEeeCCHHHHHhcCC--CeEEEEeeccCcccccccCC----------------------
Q 008860 408 --PTKPDYSAVPSAVFSQPPIGQVGLSEEQAIQEYG--DIDVFTANFRPLKATLSGLP---------------------- 461 (551)
Q Consensus 408 --~~~~~~~~~~~~~~~~~~~~~vGl~~~~a~~~~~--~~~~~~~~~~~~~~~~~~~~---------------------- 461 (551)
....+|..+|.++|++|++++||+||+||++.+. ++.+....|....+++....
T Consensus 507 ~~~~~~~~~~iP~~ift~PeiA~VGlTE~eA~~~g~~~~v~v~~~~~~~~~ra~~~~~~~~p~~~~~~~y~~g~~~~~~~ 586 (659)
T PTZ00153 507 WASKPIIYKNIPSVCYTTPELAFIGLTEKEAKELYPPDNVGVEISFYKANSKVLCENNISFPNNSKNNSYNKGKYNTVDN 586 (659)
T ss_pred ccccccccCcCCEEEECcCceEEeeCCHHHHHhcCCCcceEEEEEEecccchhhhccccccccccccccccccccccccC
Confidence 3345688999999999999999999999999863 46666666766665543322
Q ss_pred CcEEEEEEEECCCCeEEEEEEECCChhHHHHHHHHHHHCCCCHHHHccCcccCCCchHHHHHHHhhhhhhcC
Q 008860 462 DRIFMKLVLCAKTNKVLGLHMCGEDAPEIVQGFAVAVKAGLTKADFDATVGVHPTAAEEFVTLRTPTRKIRK 533 (551)
Q Consensus 462 ~~~~~kl~~~~~~~~ilG~~~~g~~~~e~i~~~~~~i~~~~~~~~l~~~~~~~pt~~e~~~~~~~~~~~~~~ 533 (551)
+.||+||++|++|++|||+|++|+++.|+|+.+++||++++|++||.+++++|||++|.+.+......++++
T Consensus 587 ~~G~vKli~d~~t~rILGa~ivG~~A~elI~~~a~aI~~~~tv~dl~~~~~~hPT~sE~~~~a~~~~~~~~~ 658 (659)
T PTZ00153 587 TEGMVKIVYLKDTKEILGMFIVGSYASILIHEGVLAINLKLSVKDLAHMVHSHPTISEVLDAAFKAIAGVRT 658 (659)
T ss_pred CceEEEEEEECCCCeEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhCcCCCCChHHHHHHHHHHHHhhhc
Confidence 689999999999999999999999999999999999999999999999999999999998887776666654
|
|
| >TIGR03452 mycothione_red mycothione reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-73 Score=595.73 Aligned_cols=438 Identities=31% Similarity=0.512 Sum_probs=386.6
Q ss_pred CccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhhccCCCccc
Q 008860 72 DFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDESNGFGWKY 151 (551)
Q Consensus 72 ~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~~ 151 (551)
+|||+|||+|++|+.||.. ..|.+|+||| ++.+||+|.|+||+|+|.|+..++..+.+++...||+..
T Consensus 2 ~yD~vvIG~G~~g~~aa~~--~~g~~V~lie----------~~~~GGtC~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~ 69 (452)
T TIGR03452 2 HYDLIIIGTGSGNSIPDPR--FADKRIAIVE----------KGTFGGTCLNVGCIPTKMFVYAAEVAQSIGESARLGIDA 69 (452)
T ss_pred CcCEEEECCCHHHHHHHHH--HCCCeEEEEe----------CCCCCCeeeccCccchHHHHHHHHHHHHHHHhhccCeeC
Confidence 5999999999999998654 4699999999 778999999999999999999999999999988898863
Q ss_pred CCCCCCChHHHHHHHHH-HHHHHHHHHHHH-H--HhCCeEEEEeEEEEecCCEEEE-cCEEEEeCeEEEcCCCCCCCCCC
Q 008860 152 GTEPQHDWSTLIANKNA-ELQRLTGIYKNI-L--INAGITLIEGRGKIVDPHTVDV-DGKLYSARHILISVGGRPFIPDI 226 (551)
Q Consensus 152 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~--~~~~v~~~~~~~~~i~~~~v~v-~g~~~~~d~lviAtG~~p~~p~i 226 (551)
....+||..++.+..+ ..+.+....... + ++.+|+++.+++.+.+++++.+ ++++++||+||||||++|..|++
T Consensus 70 -~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~~~~V~~~~g~~~~~d~lIiATGs~p~~p~~ 148 (452)
T TIGR03452 70 -EIDSVRWPDIVSRVFGDRIDPIAAGGEDYRRGDETPNIDVYDGHARFVGPRTLRTGDGEEITGDQIVIAAGSRPYIPPA 148 (452)
T ss_pred -CCCccCHHHHHHHhhhhHhHHHhccchHhhhhcccCCeEEEEEEEEEecCCEEEECCCcEEEeCEEEEEECCCCCCCCC
Confidence 2456899999998876 555554322222 2 3479999999999999999998 66789999999999999998875
Q ss_pred CCCC--ceecchhhhcCCCCCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCCCCCHHHHHHHHHHHHhcCcEEE
Q 008860 227 PGSE--YAIDSDAALDLPSKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRDFVAEQMSLRGIEFH 304 (551)
Q Consensus 227 ~g~~--~~~~~~~~~~~~~~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~ 304 (551)
.+.. .++++++++.+.+.+++++|||+|++|+|+|..|.++|.+|+++++.+.+++.+++++.+.+.+.++ .||+++
T Consensus 149 ~~~~~~~~~~~~~~~~l~~~~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~ll~~~d~~~~~~l~~~~~-~gI~i~ 227 (452)
T TIGR03452 149 IADSGVRYHTNEDIMRLPELPESLVIVGGGYIAAEFAHVFSALGTRVTIVNRSTKLLRHLDEDISDRFTEIAK-KKWDIR 227 (452)
T ss_pred CCCCCCEEEcHHHHHhhhhcCCcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCccccccCHHHHHHHHHHHh-cCCEEE
Confidence 4432 3678888888887899999999999999999999999999999999999888899999988877654 689999
Q ss_pred cCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCcCCCCCCCCccccCeeecCCCCeEeCCCCCCCCCcEEEeCcCCC
Q 008860 305 TEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNTKNLGLEKVGVKMTKNGAIEVDEYSGTAVPSIWAVGDVTD 384 (551)
Q Consensus 305 ~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~t~~~~vya~GD~~~ 384 (551)
++++|++++.++++ +.+.+.+|+++++|.|++|+|++|++++++++.+|++++++|+|.||+++||++|+|||+|||++
T Consensus 228 ~~~~V~~i~~~~~~-v~v~~~~g~~i~~D~vl~a~G~~pn~~~l~~~~~gl~~~~~G~i~vd~~~~Ts~~~IyA~GD~~~ 306 (452)
T TIGR03452 228 LGRNVTAVEQDGDG-VTLTLDDGSTVTADVLLVATGRVPNGDLLDAEAAGVEVDEDGRIKVDEYGRTSARGVWALGDVSS 306 (452)
T ss_pred eCCEEEEEEEcCCe-EEEEEcCCCEEEcCEEEEeeccCcCCCCcCchhcCeeECCCCcEeeCCCcccCCCCEEEeecccC
Confidence 99999999876555 66777888889999999999999999998888899999999999999999999999999999999
Q ss_pred CCCChHHHHHhHHHHHHHHcCCCC-CCCCCCCccEEEecCCceEEeeCCHHHHHhcCCCeEEEEeeccCcccccccCCCc
Q 008860 385 RINLTPVALMEGGALAKTLFQAEP-TKPDYSAVPSAVFSQPPIGQVGLSEEQAIQEYGDIDVFTANFRPLKATLSGLPDR 463 (551)
Q Consensus 385 ~~~~~~~A~~~g~~aa~~i~g~~~-~~~~~~~~~~~~~~~~~~~~vGl~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (551)
.+++++.|.+||+++|+||++... ...++..+|+++|++|+++++|+||+||++.+.++.+...++....+++..+.+.
T Consensus 307 ~~~l~~~A~~~g~~~a~ni~~~~~~~~~~~~~~p~~i~t~p~ia~vGlte~ea~~~g~~~~~~~~~~~~~~~~~~~~~~~ 386 (452)
T TIGR03452 307 PYQLKHVANAEARVVKHNLLHPNDLRKMPHDFVPSAVFTHPQIATVGLTEQEAREAGHDITVKIQNYGDVAYGWAMEDTT 386 (452)
T ss_pred cccChhHHHHHHHHHHHHhcCCCCcccCCCCCCCeEEECCCCeeeeeCCHHHHHhcCCCeEEEEecCCchhhHhhcCCCC
Confidence 989999999999999999998643 3466778999999999999999999999998878888877888777776667788
Q ss_pred EEEEEEEECCCCeEEEEEEECCChhHHHHHHHHHHHCCCCHHHHccC-cccCCCchHHHHHH
Q 008860 464 IFMKLVLCAKTNKVLGLHMCGEDAPEIVQGFAVAVKAGLTKADFDAT-VGVHPTAAEEFVTL 524 (551)
Q Consensus 464 ~~~kl~~~~~~~~ilG~~~~g~~~~e~i~~~~~~i~~~~~~~~l~~~-~~~~pt~~e~~~~~ 524 (551)
+|+||++|++|++|||+|++|+++.|+|+.+++||++++|++||..+ +++|||++|++.++
T Consensus 387 g~~Klv~d~~t~~ilG~~~vg~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~hPt~~e~~~~a 448 (452)
T TIGR03452 387 GFCKLIADRDTGKLLGAHIIGPQASSLIQPLITAMAFGLDAREMARKQYWIHPALPEVVENA 448 (452)
T ss_pred eEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhhCCcccCCchHHHHHHH
Confidence 99999999999999999999999999999999999999999999986 88999999997653
|
Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate. |
| >PRK07845 flavoprotein disulfide reductase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-72 Score=589.53 Aligned_cols=440 Identities=29% Similarity=0.435 Sum_probs=398.4
Q ss_pred ccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhhccCCCcccC
Q 008860 73 FDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDESNGFGWKYG 152 (551)
Q Consensus 73 ~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~~~ 152 (551)
.||+|||||++|+.+|..+++.|.+|+||| +..+||+|.|+||+|+|.++..++..+.++....+|+...
T Consensus 2 ~~vvviG~G~~G~~~a~~~~~~g~~v~~~e----------~~~~gG~c~~~gciPsK~l~~~a~~~~~~~~~~~~g~~~~ 71 (466)
T PRK07845 2 TRIVIIGGGPGGYEAALVAAQLGADVTVIE----------RDGLGGAAVLTDCVPSKTLIATAEVRTELRRAAELGIRFI 71 (466)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEE----------ccCCCCcccccCCcchHHHHHHHHHHHHHHHHHhCCcccc
Confidence 589999999999999999999999999999 6678999999999999999999988888888888888642
Q ss_pred --CCCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEeEEEE----ecCCEEEE---cCE--EEEeCeEEEcCCCCC
Q 008860 153 --TEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIEGRGKI----VDPHTVDV---DGK--LYSARHILISVGGRP 221 (551)
Q Consensus 153 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~----i~~~~v~v---~g~--~~~~d~lviAtG~~p 221 (551)
....++|..+..+.++..+.+...+.+.+++.+|+++.+++.+ ++++++.+ +++ .+.||+||||||++|
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~g~~~~~~~~~~~~~v~V~~~~g~~~~~~~d~lViATGs~p 151 (466)
T PRK07845 72 DDGEARVDLPAVNARVKALAAAQSADIRARLEREGVRVIAGRGRLIDPGLGPHRVKVTTADGGEETLDADVVLIATGASP 151 (466)
T ss_pred cCcccccCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEeecccCCCEEEEEeCCCceEEEecCEEEEcCCCCC
Confidence 2457899999999998888888788888889999999999999 67787777 444 799999999999999
Q ss_pred CCCCCCC--CCceecchhhhcCCCCCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCCCCCHHHHHHHHHHHHhc
Q 008860 222 FIPDIPG--SEYAIDSDAALDLPSKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRDFVAEQMSLR 299 (551)
Q Consensus 222 ~~p~i~g--~~~~~~~~~~~~~~~~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~ 299 (551)
..|++++ .+.++++++++++...+++++|||+|++|+|+|..|+++|.+|+++++.+++++.+++++.+.+.+.|+++
T Consensus 152 ~~~p~~~~~~~~v~~~~~~~~~~~~~~~vvVIGgG~ig~E~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~l~~~L~~~ 231 (466)
T PRK07845 152 RILPTAEPDGERILTWRQLYDLDELPEHLIVVGSGVTGAEFASAYTELGVKVTLVSSRDRVLPGEDADAAEVLEEVFARR 231 (466)
T ss_pred CCCCCCCCCCceEEeehhhhcccccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcCCCCCCHHHHHHHHHHHHHC
Confidence 8776544 34578888888887788999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEcCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCcCCCCCCCCccccCeeecCCCCeEeCCCCCCCCCcEEEe
Q 008860 300 GIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNTKNLGLEKVGVKMTKNGAIEVDEYSGTAVPSIWAV 379 (551)
Q Consensus 300 Gv~i~~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~t~~~~vya~ 379 (551)
||++++++++.+++.++++ +.+.+.+|+++++|.|++++|++|++..+++++.+++++++|+|.||+++||++|||||+
T Consensus 232 gV~i~~~~~v~~v~~~~~~-~~v~~~~g~~l~~D~vl~a~G~~pn~~~l~l~~~gl~~~~~G~i~Vd~~~~Ts~~~IyA~ 310 (466)
T PRK07845 232 GMTVLKRSRAESVERTGDG-VVVTLTDGRTVEGSHALMAVGSVPNTAGLGLEEAGVELTPSGHITVDRVSRTSVPGIYAA 310 (466)
T ss_pred CcEEEcCCEEEEEEEeCCE-EEEEECCCcEEEecEEEEeecCCcCCCCCCchhhCceECCCCcEeECCCcccCCCCEEEE
Confidence 9999999999999876555 667788888999999999999999999877889999999999999999999999999999
Q ss_pred CcCCCCCCChHHHHHhHHHHHHHHcCCCCCCCCCCCccEEEecCCceEEeeCCHHHHHhcCCCeEEEEeeccCccccccc
Q 008860 380 GDVTDRINLTPVALMEGGALAKTLFQAEPTKPDYSAVPSAVFSQPPIGQVGLSEEQAIQEYGDIDVFTANFRPLKATLSG 459 (551)
Q Consensus 380 GD~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~~~~~~~~~~~~~vGl~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 459 (551)
|||++.+++++.|..||+++++|+++....+.++..+|+++|++|+++++|+||++|++.+.++.+...++....+++..
T Consensus 311 GD~~~~~~l~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~~vf~~p~~a~vGlte~~a~~~g~~~~~~~~~~~~~~~~~~~ 390 (466)
T PRK07845 311 GDCTGVLPLASVAAMQGRIAMYHALGEAVSPLRLKTVASNVFTRPEIATVGVSQAAIDSGEVPARTVMLPLATNPRAKMS 390 (466)
T ss_pred eeccCCccchhHHHHHHHHHHHHHcCCCCCcCCCCCCCEEEeCCCcceeecCCHHHHHhCCCceEEEEEecccCchhhhc
Confidence 99999999999999999999999998654455678899999999999999999999999877888887777777777767
Q ss_pred CCCcEEEEEEEECCCCeEEEEEEECCChhHHHHHHHHHHHCCCCHHHHccCcccCCCchHHHHH
Q 008860 460 LPDRIFMKLVLCAKTNKVLGLHMCGEDAPEIVQGFAVAVKAGLTKADFDATVGVHPTAAEEFVT 523 (551)
Q Consensus 460 ~~~~~~~kl~~~~~~~~ilG~~~~g~~~~e~i~~~~~~i~~~~~~~~l~~~~~~~pt~~e~~~~ 523 (551)
+.+++|+||++|++||+|||+|++|+++.|+|+.+++||++++|++||.+++++|||++|.+.+
T Consensus 391 ~~~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~ 454 (466)
T PRK07845 391 GLRDGFVKLFCRPGTGVVIGGVVVAPRASELILPIALAVQNRLTVDDLAQTFTVYPSLSGSITE 454 (466)
T ss_pred CCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhcCcCCCCCHHHHHHH
Confidence 7788999999999999999999999999999999999999999999999999999999998665
|
|
| >PRK06115 dihydrolipoamide dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-72 Score=590.03 Aligned_cols=438 Identities=28% Similarity=0.463 Sum_probs=387.1
Q ss_pred CccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhh--ccCCCc
Q 008860 72 DFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDE--SNGFGW 149 (551)
Q Consensus 72 ~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~--~~~~g~ 149 (551)
+|||+||||||||++||.++++.|++|+|||+ .+.+||+|.|+||+|+|.++..+...+.... ...+|+
T Consensus 3 ~~DvvVIG~GpaG~~AA~~aa~~G~~V~liE~---------~~~~GG~c~~~gciPsK~l~~~~~~~~~~~~~~~~~~gi 73 (466)
T PRK06115 3 SYDVVIIGGGPGGYNAAIRAGQLGLKVACVEG---------RSTLGGTCLNVGCMPSKALLHASELYEAASGGEFAHLGI 73 (466)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCeEEEEec---------CCceeeeeccCcccccHHHHHHhHHHHHHhhhhhhhcCc
Confidence 59999999999999999999999999999992 3679999999999999999998887665553 456676
Q ss_pred ccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEeEEEEecCCEEEE---cC--EEEEeCeEEEcCCCCCCCC
Q 008860 150 KYGTEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIEGRGKIVDPHTVDV---DG--KLYSARHILISVGGRPFIP 224 (551)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~i~~~~v~v---~g--~~~~~d~lviAtG~~p~~p 224 (551)
.. ...++|..++.+....+..+......++++.+|+++.+++.+.+++++.+ ++ .++.||+||||||++|.
T Consensus 74 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a~~~~~~~v~v~~~~g~~~~~~~d~lVIATGs~p~-- 149 (466)
T PRK06115 74 EV--KPTLNLAQMMKQKDESVEALTKGVEFLFRKNKVDWIKGWGRLDGVGKVVVKAEDGSETQLEAKDIVIATGSEPT-- 149 (466)
T ss_pred cc--cCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEEEcCCCceEEEEeCEEEEeCCCCCC--
Confidence 53 35789999999999888888777778888889999999999888888776 44 36999999999999985
Q ss_pred CCCCCC----ceecchhhhcCCCCCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCCCCCHHHHHHHHHHHHhcC
Q 008860 225 DIPGSE----YAIDSDAALDLPSKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRDFVAEQMSLRG 300 (551)
Q Consensus 225 ~i~g~~----~~~~~~~~~~~~~~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~G 300 (551)
++||.+ .++++++++.+...+++++|||+|++|+|+|..|.++|.+|+++++.+++++.+++++.+.+.+.|++.|
T Consensus 150 ~ipg~~~~~~~~~~~~~~~~~~~~~~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~~il~~~d~~~~~~l~~~l~~~g 229 (466)
T PRK06115 150 PLPGVTIDNQRIIDSTGALSLPEVPKHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLDRICPGTDTETAKTLQKALTKQG 229 (466)
T ss_pred CCCCCCCCCCeEECHHHHhCCccCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCCCCCCCCHHHHHHHHHHHHhcC
Confidence 345532 3678888888777899999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEcCcccEEEEEcCCceEEEEEC---C--CeEEEeeEEEEecCcCCCCCCCCccccCeeecCCCCeEeCCCCCCCCCc
Q 008860 301 IEFHTEESPQAILKSTDGSLSVKTN---K--GTVDGFSHVMFATGRRPNTKNLGLEKVGVKMTKNGAIEVDEYSGTAVPS 375 (551)
Q Consensus 301 v~i~~~~~v~~i~~~~~~~~~V~~~---~--G~~i~~d~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~t~~~~ 375 (551)
|+++++++|++++.++++ +.+.+. + ++++++|.|++|+|++||++.++++..+++++++| +.||+++||++|+
T Consensus 230 V~i~~~~~V~~i~~~~~~-v~v~~~~~~~g~~~~i~~D~vi~a~G~~pn~~~l~~~~~g~~~~~~G-~~vd~~~~Ts~~~ 307 (466)
T PRK06115 230 MKFKLGSKVTGATAGADG-VSLTLEPAAGGAAETLQADYVLVAIGRRPYTQGLGLETVGLETDKRG-MLANDHHRTSVPG 307 (466)
T ss_pred CEEEECcEEEEEEEcCCe-EEEEEEEcCCCceeEEEeCEEEEccCCccccccCCcccccceeCCCC-EEECCCeecCCCC
Confidence 999999999999876554 444432 2 35799999999999999999877888899988776 7899999999999
Q ss_pred EEEeCcCCCCCCChHHHHHhHHHHHHHHcCCCCCCCCCCCccEEEecCCceEEeeCCHHHHHhcCCCeEEEEeeccCccc
Q 008860 376 IWAVGDVTDRINLTPVALMEGGALAKTLFQAEPTKPDYSAVPSAVFSQPPIGQVGLSEEQAIQEYGDIDVFTANFRPLKA 455 (551)
Q Consensus 376 vya~GD~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~~~~~~~~~~~~~vGl~~~~a~~~~~~~~~~~~~~~~~~~ 455 (551)
|||+|||++.+++++.|.+||+++|+||++.. ...+|..+|.++|++|++++||+||+||++.+.++.+...+|..+.+
T Consensus 308 IyA~GD~~~~~~la~~A~~~g~~aa~~i~~~~-~~~~~~~~p~~~~t~p~ia~vGlte~~a~~~g~~~~~~~~~~~~~~~ 386 (466)
T PRK06115 308 VWVIGDVTSGPMLAHKAEDEAVACIERIAGKA-GEVNYGLIPGVIYTRPEVATVGKTEEQLKAEGRAYKVGKFPFTANSR 386 (466)
T ss_pred EEEeeecCCCcccHHHHHHHHHHHHHHHcCCC-CCCCCCCCCeEEECCcccEEeeCCHHHHHHCCCCEEEEEEecccChh
Confidence 99999999999999999999999999999854 34677889999999999999999999999988788888888888888
Q ss_pred ccccCCCcEEEEEEEECCCCeEEEEEEECCChhHHHHHHHHHHHCCCCHHHHccCcccCCCchHHHHHHH
Q 008860 456 TLSGLPDRIFMKLVLCAKTNKVLGLHMCGEDAPEIVQGFAVAVKAGLTKADFDATVGVHPTAAEEFVTLR 525 (551)
Q Consensus 456 ~~~~~~~~~~~kl~~~~~~~~ilG~~~~g~~~~e~i~~~~~~i~~~~~~~~l~~~~~~~pt~~e~~~~~~ 525 (551)
+...+...+|+||++|++|++|||+|++|++++|+|+.+++||++++|++||.+++++|||++|.+.+..
T Consensus 387 ~~~~~~~~g~~klv~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~dl~~~~~~hPt~~e~~~~a~ 456 (466)
T PRK06115 387 AKINHETEGFAKILADARTDEVLGVHMVGPSVSEMIGEFCVAMEFSASAEDIALTCHPHPTRSEALRQAA 456 (466)
T ss_pred hHhcCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhhCccCCCChHHHHHHHH
Confidence 8777778899999999999999999999999999999999999999999999999999999999876543
|
|
| >PRK07818 dihydrolipoamide dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-72 Score=590.13 Aligned_cols=440 Identities=30% Similarity=0.446 Sum_probs=388.4
Q ss_pred CCccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhh-ccCCCc
Q 008860 71 YDFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDE-SNGFGW 149 (551)
Q Consensus 71 ~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~-~~~~g~ 149 (551)
.+|||+||||||||++||.+|++.|++|+||| ++.+||+|.+.||+|+|.++..++..+.... ...+|+
T Consensus 3 ~~~DvvIIG~GpaG~~AA~~aa~~G~~V~lie----------~~~~GG~c~~~gciPsk~l~~~~~~~~~~~~~~~~~gi 72 (466)
T PRK07818 3 THYDVVVLGAGPGGYVAAIRAAQLGLKTAVVE----------KKYWGGVCLNVGCIPSKALLRNAELAHIFTKEAKTFGI 72 (466)
T ss_pred CcCCEEEECCCHHHHHHHHHHHhCCCeEEEEe----------cCCCCCceecCCccccHHHHhhHHHHHHHHHHHHhcCC
Confidence 46999999999999999999999999999999 6789999999999999999888776665553 456666
Q ss_pred ccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEeEEEEecCCEEEE---cC--EEEEeCeEEEcCCCCCCCC
Q 008860 150 KYGTEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIEGRGKIVDPHTVDV---DG--KLYSARHILISVGGRPFIP 224 (551)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~i~~~~v~v---~g--~~~~~d~lviAtG~~p~~p 224 (551)
. ....++|..+..+.+...+++.......++..+|+.+.+++.+++++++.+ ++ .++.||+||||||++|+.|
T Consensus 73 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~g~~~~~~~~~v~v~~~~g~~~~~~~d~lViATGs~p~~~ 150 (466)
T PRK07818 73 S--GEVTFDYGAAFDRSRKVAEGRVKGVHFLMKKNKITEIHGYGTFTDANTLEVDLNDGGTETVTFDNAIIATGSSTRLL 150 (466)
T ss_pred C--cCcccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEcCCCEEEEEecCCCeeEEEcCEEEEeCCCCCCCC
Confidence 4 345789999999988888777776666777789999999999999998877 33 4799999999999999765
Q ss_pred CCCCC---CceecchhhhcCCCCCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCCCCCHHHHHHHHHHHHhcCc
Q 008860 225 DIPGS---EYAIDSDAALDLPSKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRDFVAEQMSLRGI 301 (551)
Q Consensus 225 ~i~g~---~~~~~~~~~~~~~~~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~Gv 301 (551)
||. ..+++.++.+.....+++++|||+|++|+|+|..|+++|.+|+++++.+++++.+++++.+.+.+.|+++||
T Consensus 151 --pg~~~~~~v~~~~~~~~~~~~~~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l~~~d~~~~~~l~~~l~~~gV 228 (466)
T PRK07818 151 --PGTSLSENVVTYEEQILSRELPKSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDRALPNEDAEVSKEIAKQYKKLGV 228 (466)
T ss_pred --CCCCCCCcEEchHHHhccccCCCeEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCcCCccCHHHHHHHHHHHHHCCC
Confidence 443 346777776656667899999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCcccEEEEEcCCceEEEEEC--CC--eEEEeeEEEEecCcCCCCCCCCccccCeeecCCCCeEeCCCCCCCCCcEE
Q 008860 302 EFHTEESPQAILKSTDGSLSVKTN--KG--TVDGFSHVMFATGRRPNTKNLGLEKVGVKMTKNGAIEVDEYSGTAVPSIW 377 (551)
Q Consensus 302 ~i~~~~~v~~i~~~~~~~~~V~~~--~G--~~i~~d~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~t~~~~vy 377 (551)
+++++++|++++.+++. +.+.+. +| +++++|.|++|+|++|+++.+++++.+++++++|+|.||+++||++|+||
T Consensus 229 ~i~~~~~v~~i~~~~~~-~~v~~~~~~g~~~~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~~g~i~vd~~~~Ts~p~Iy 307 (466)
T PRK07818 229 KILTGTKVESIDDNGSK-VTVTVSKKDGKAQELEADKVLQAIGFAPRVEGYGLEKTGVALTDRGAIAIDDYMRTNVPHIY 307 (466)
T ss_pred EEEECCEEEEEEEeCCe-EEEEEEecCCCeEEEEeCEEEECcCcccCCCCCCchhcCcEECCCCcEeeCCCcccCCCCEE
Confidence 99999999999876544 445543 56 36999999999999999998778899999988899999999999999999
Q ss_pred EeCcCCCCCCChHHHHHhHHHHHHHHcCCCCCCC-CCCCccEEEecCCceEEeeCCHHHHHhcCCCeEEEEeeccCcccc
Q 008860 378 AVGDVTDRINLTPVALMEGGALAKTLFQAEPTKP-DYSAVPSAVFSQPPIGQVGLSEEQAIQEYGDIDVFTANFRPLKAT 456 (551)
Q Consensus 378 a~GD~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~-~~~~~~~~~~~~~~~~~vGl~~~~a~~~~~~~~~~~~~~~~~~~~ 456 (551)
|+|||++.+++++.|..||++||.||+|.+..+. ++..+|.++|++|+++++|+||+||++.+.++.+...+|..+.++
T Consensus 308 AiGD~~~~~~l~~~A~~~g~~aa~~i~g~~~~~~~~~~~~p~~~~~~p~~a~vGlte~~a~~~g~~~~~~~~~~~~~~~~ 387 (466)
T PRK07818 308 AIGDVTAKLQLAHVAEAQGVVAAETIAGAETLELGDYRMMPRATFCQPQVASFGLTEEQAREEGYDVKVAKFPFTANGKA 387 (466)
T ss_pred EEeecCCCcccHhHHHHHHHHHHHHHcCCCCCccCccCCCCeEEECCCCeEEEeCCHHHHHhCCCcEEEEEEECCccchh
Confidence 9999999899999999999999999998654333 788899999999999999999999999887888888888888888
Q ss_pred cccCCCcEEEEEEEECCCCeEEEEEEECCChhHHHHHHHHHHHCCCCHHHHccCcccCCCchHHHHHHH
Q 008860 457 LSGLPDRIFMKLVLCAKTNKVLGLHMCGEDAPEIVQGFAVAVKAGLTKADFDATVGVHPTAAEEFVTLR 525 (551)
Q Consensus 457 ~~~~~~~~~~kl~~~~~~~~ilG~~~~g~~~~e~i~~~~~~i~~~~~~~~l~~~~~~~pt~~e~~~~~~ 525 (551)
...+.+.+|+||++|++|++|||+|++|++++|+|+.+++||++++|++||.+++++|||++|.+.+..
T Consensus 388 ~~~~~~~g~~Klv~~~~~~~ilG~~~vg~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~~ 456 (466)
T PRK07818 388 HGLGDPTGFVKLVADAKYGELLGGHLIGPDVSELLPELTLAQKWDLTAEELARNVHTHPTLSEALKEAF 456 (466)
T ss_pred hhcCCCCeEEEEEEECCCCeEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhcCccCCCchHHHHHHHH
Confidence 777788999999999999999999999999999999999999999999999999999999999977543
|
|
| >PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-72 Score=589.79 Aligned_cols=442 Identities=29% Similarity=0.433 Sum_probs=394.0
Q ss_pred CccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhhccCCCccc
Q 008860 72 DFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDESNGFGWKY 151 (551)
Q Consensus 72 ~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~~ 151 (551)
+|||+||||||+|+++|..|++.|++|+|||+ ...+||+|.+.||+|+|.+...............| ...
T Consensus 5 ~yDvvVIGaGpaG~~aA~~la~~G~~v~liE~---------~~~~GG~~~~~gcipsk~l~~~~~~~~~~~~~~~~-~~~ 74 (461)
T PRK05249 5 DYDLVVIGSGPAGEGAAMQAAKLGKRVAVIER---------YRNVGGGCTHTGTIPSKALREAVLRLIGFNQNPLY-SSY 74 (461)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCEEEEEec---------cccccccccccCCCCHHHHHHHHHHHHHHhhhhhh-ccc
Confidence 69999999999999999999999999999992 35799999999999999988776655444443333 111
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEeEEEEecCCEEEE---cC--EEEEeCeEEEcCCCCCCCCCC
Q 008860 152 GTEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIEGRGKIVDPHTVDV---DG--KLYSARHILISVGGRPFIPDI 226 (551)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~i~~~~v~v---~g--~~~~~d~lviAtG~~p~~p~i 226 (551)
.....++|..+..+.+..++++...+...+.+.+++++.+++.+++.+++.+ ++ ..+.||+||||||++|..|++
T Consensus 75 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~v~~~~g~~~~~~~d~lviATGs~p~~p~~ 154 (461)
T PRK05249 75 RVKLRITFADLLARADHVINKQVEVRRGQYERNRVDLIQGRARFVDPHTVEVECPDGEVETLTADKIVIATGSRPYRPPD 154 (461)
T ss_pred CCcCccCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEecCCEEEEEeCCCceEEEEcCEEEEcCCCCCCCCCC
Confidence 2235678999999988888888877888888999999999999999988777 34 378999999999999999987
Q ss_pred CCCC--ceecchhhhcCCCCCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCCCCCHHHHHHHHHHHHhcCcEEE
Q 008860 227 PGSE--YAIDSDAALDLPSKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRDFVAEQMSLRGIEFH 304 (551)
Q Consensus 227 ~g~~--~~~~~~~~~~~~~~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~ 304 (551)
++.+ .++++++++.+...+++++|||+|++|+|+|..|+++|.+|+++++.+++++.+++++.+.+.+.++++||+++
T Consensus 155 ~~~~~~~v~~~~~~~~~~~~~~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~gI~v~ 234 (461)
T PRK05249 155 VDFDHPRIYDSDSILSLDHLPRSLIIYGAGVIGCEYASIFAALGVKVTLINTRDRLLSFLDDEISDALSYHLRDSGVTIR 234 (461)
T ss_pred CCCCCCeEEcHHHhhchhhcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCCcCCHHHHHHHHHHHHHcCCEEE
Confidence 7653 47888888888888999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCcCCCCCCCCccccCeeecCCCCeEeCCCCCCCCCcEEEeCcCCC
Q 008860 305 TEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNTKNLGLEKVGVKMTKNGAIEVDEYSGTAVPSIWAVGDVTD 384 (551)
Q Consensus 305 ~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~t~~~~vya~GD~~~ 384 (551)
+++.|++++.++++ +.+++.+|+++++|.|++|+|++|+++++.+++.+++++++|+|.||+++||+.|||||+|||++
T Consensus 235 ~~~~v~~i~~~~~~-~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~t~~~~IyAiGD~~~ 313 (461)
T PRK05249 235 HNEEVEKVEGGDDG-VIVHLKSGKKIKADCLLYANGRTGNTDGLNLENAGLEADSRGQLKVNENYQTAVPHIYAVGDVIG 313 (461)
T ss_pred ECCEEEEEEEeCCe-EEEEECCCCEEEeCEEEEeecCCccccCCCchhhCcEecCCCcEeeCCCcccCCCCEEEeeecCC
Confidence 99999999876555 66777888889999999999999999987788899999999999999999999999999999999
Q ss_pred CCCChHHHHHhHHHHHHHHcCCCCCCCCCCCccEEEecCCceEEeeCCHHHHHhcCCCeEEEEeeccCcccccccCCCcE
Q 008860 385 RINLTPVALMEGGALAKTLFQAEPTKPDYSAVPSAVFSQPPIGQVGLSEEQAIQEYGDIDVFTANFRPLKATLSGLPDRI 464 (551)
Q Consensus 385 ~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~~~~~~~~~~~~~vGl~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (551)
.+++++.|..||+++|.||+|.. ...++..+|+++|+.|+++++|+||+||++.+.++.+...+|....++...+.+.|
T Consensus 314 ~~~~~~~A~~~g~~aa~~i~g~~-~~~~~~~~p~~i~~~p~ia~vG~te~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g 392 (461)
T PRK05249 314 FPSLASASMDQGRIAAQHAVGEA-TAHLIEDIPTGIYTIPEISSVGKTEQELTAAKVPYEVGRARFKELARAQIAGDNVG 392 (461)
T ss_pred CcccHhHHHHHHHHHHHHHcCCC-cccccCCCCeEEECCCcceEecCCHHHHHHcCCCeEEEEEccccccceeecCCCCc
Confidence 88899999999999999999753 34567889999999999999999999999988788888888888888777777889
Q ss_pred EEEEEEECCCCeEEEEEEECCChhHHHHHHHHHHHCCCCHHHHccCcccCCCchHHHHHHH
Q 008860 465 FMKLVLCAKTNKVLGLHMCGEDAPEIVQGFAVAVKAGLTKADFDATVGVHPTAAEEFVTLR 525 (551)
Q Consensus 465 ~~kl~~~~~~~~ilG~~~~g~~~~e~i~~~~~~i~~~~~~~~l~~~~~~~pt~~e~~~~~~ 525 (551)
|+||++|++|++|||+|++|++|+|+|+.+++||++++|++||.+++++|||++|.+.+..
T Consensus 393 ~~klv~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~Pt~~e~~~~~~ 453 (461)
T PRK05249 393 MLKILFHRETLEILGVHCFGERATEIIHIGQAIMEQKGTIEYFVNTTFNYPTMAEAYRVAA 453 (461)
T ss_pred EEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcCccCCCCHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999877644
|
|
| >TIGR02053 MerA mercuric reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-71 Score=588.51 Aligned_cols=441 Identities=35% Similarity=0.532 Sum_probs=392.3
Q ss_pred ccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhhccCCCcccC
Q 008860 73 FDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDESNGFGWKYG 152 (551)
Q Consensus 73 ~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~~~ 152 (551)
|||+||||||||++||.+|++.|++|+||| +..+||+|.|+||+|+|.++..++..+...+. .||+..
T Consensus 1 yDvvVIGaGpaG~~aA~~aa~~g~~v~lie----------~~~~GG~c~n~gciPsk~l~~~~~~~~~~~~~-~~g~~~- 68 (463)
T TIGR02053 1 YDLVIIGSGAAAFAAAIKAAELGASVAMVE----------RGPLGGTCVNVGCVPSKMLLRAAEVAHYARKP-PFGGLA- 68 (463)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEe----------CCcccCCeeeecEEccHHHHHHHHHHHHhhcc-Cccccc-
Confidence 799999999999999999999999999999 66799999999999999999998887776654 466543
Q ss_pred CCCCCChHHHHHHHHHHHHHHHH-HHHHHHHhCCeEEEEeEEEEecCCEEEEcC--EEEEeCeEEEcCCCCCCCCCCCCC
Q 008860 153 TEPQHDWSTLIANKNAELQRLTG-IYKNILINAGITLIEGRGKIVDPHTVDVDG--KLYSARHILISVGGRPFIPDIPGS 229 (551)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~i~~~~v~v~g--~~~~~d~lviAtG~~p~~p~i~g~ 229 (551)
....++|..++.+.++...++.. .+...+++.+|+++.+++.+.+++++.+++ ..+.||+||||||++|..|++||.
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~~~~~~~~~v~v~~g~~~~~~~~lIiATGs~p~~p~i~G~ 148 (463)
T TIGR02053 69 ATVAVDFGELLEGKREVVEELRHEKYEDVLSSYGVDYLRGRARFKDPKTVKVDLGREVRGAKRFLIATGARPAIPPIPGL 148 (463)
T ss_pred CCCccCHHHHHHHHHHHHHHHhhhhHHHHHHhCCcEEEEEEEEEccCCEEEEcCCeEEEEeCEEEEcCCCCCCCCCCCCc
Confidence 24578999999999888887754 366778888999999999999999998843 468999999999999999999997
Q ss_pred Cc--eecchhhhcCCCCCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCCCCCHHHHHHHHHHHHhcCcEEEcCc
Q 008860 230 EY--AIDSDAALDLPSKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRDFVAEQMSLRGIEFHTEE 307 (551)
Q Consensus 230 ~~--~~~~~~~~~~~~~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~~~~ 307 (551)
+. ++++++++.+...+++++|||+|++|+|+|..|+++|.+|+++++.+++++.+++++.+.+.+.+++.||++++++
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~gV~i~~~~ 228 (463)
T TIGR02053 149 KEAGYLTSEEALALDRIPESLAVIGGGAIGVELAQAFARLGSEVTILQRSDRLLPREEPEISAAVEEALAEEGIEVVTSA 228 (463)
T ss_pred ccCceECchhhhCcccCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcCCCccCHHHHHHHHHHHHHcCCEEEcCc
Confidence 53 6788888887777899999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccEEEEEcCCceEEEEEC---CCeEEEeeEEEEecCcCCCCCCCCccccCeeecCCCCeEeCCCCCCCCCcEEEeCcCCC
Q 008860 308 SPQAILKSTDGSLSVKTN---KGTVDGFSHVMFATGRRPNTKNLGLEKVGVKMTKNGAIEVDEYSGTAVPSIWAVGDVTD 384 (551)
Q Consensus 308 ~v~~i~~~~~~~~~V~~~---~G~~i~~d~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~t~~~~vya~GD~~~ 384 (551)
+|++++.+++. ..+.+. +++++++|.|++|+|++|+++.++++..+++++++|+|.||+++||+.|||||+|||++
T Consensus 229 ~V~~i~~~~~~-~~v~~~~~~~~~~i~~D~ViiA~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~Ts~~~VyAiGD~~~ 307 (463)
T TIGR02053 229 QVKAVSVRGGG-KIITVEKPGGQGEVEADELLVATGRRPNTDGLGLEKAGVKLDERGGILVDETLRTSNPGIYAAGDVTG 307 (463)
T ss_pred EEEEEEEcCCE-EEEEEEeCCCceEEEeCEEEEeECCCcCCCCCCccccCCEECCCCcEeECCCccCCCCCEEEeeecCC
Confidence 99999876544 444442 23579999999999999999966778899999999999999999999999999999999
Q ss_pred CCCChHHHHHhHHHHHHHHcCCCCCCCCCCCccEEEecCCceEEeeCCHHHHHhcCCCeEEEEeeccCcccccccCCCcE
Q 008860 385 RINLTPVALMEGGALAKTLFQAEPTKPDYSAVPSAVFSQPPIGQVGLSEEQAIQEYGDIDVFTANFRPLKATLSGLPDRI 464 (551)
Q Consensus 385 ~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~~~~~~~~~~~~~vGl~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (551)
.+.+++.|.+||+++|.||++......++..+|.++|++|+++++|+||++|++.+.++.+...++..+.+++..+.+.+
T Consensus 308 ~~~~~~~A~~~g~~aa~ni~~~~~~~~~~~~~p~~~~~~p~~a~vGlte~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g 387 (463)
T TIGR02053 308 GLQLEYVAAKEGVVAAENALGGANAKLDLLVIPRVVFTDPAVASVGLTEAEAQKAGIECDCRTLPLTNVPRARINRDTRG 387 (463)
T ss_pred CcccHhHHHHHHHHHHHHhcCCCCCccCcCCCCeEEeccCceEEEeCCHHHHHhcCCCeEEEEEecccchHHHhcCCCcE
Confidence 98999999999999999999863344667789999999999999999999999988788888888887777766677889
Q ss_pred EEEEEEECCCCeEEEEEEECCChhHHHHHHHHHHHCCCCHHHHccCcccCCCchHHHHHHHh
Q 008860 465 FMKLVLCAKTNKVLGLHMCGEDAPEIVQGFAVAVKAGLTKADFDATVGVHPTAAEEFVTLRT 526 (551)
Q Consensus 465 ~~kl~~~~~~~~ilG~~~~g~~~~e~i~~~~~~i~~~~~~~~l~~~~~~~pt~~e~~~~~~~ 526 (551)
|+||++|++|++|||+|++|+++.|+|+.+++||++++|++||.+++++|||++|.+.++..
T Consensus 388 ~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~pt~~e~~~~a~~ 449 (463)
T TIGR02053 388 FIKLVAEPGTGKVLGVQVVAPEAAEVINEAALAIRAGMTVDDLIDTLHPFPTMAEGLKLAAQ 449 (463)
T ss_pred EEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhCcccCCChHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999998765443
|
This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH. |
| >PRK14727 putative mercuric reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-71 Score=587.89 Aligned_cols=442 Identities=28% Similarity=0.405 Sum_probs=389.2
Q ss_pred CCccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhhccCCCcc
Q 008860 71 YDFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDESNGFGWK 150 (551)
Q Consensus 71 ~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~ 150 (551)
.+|||+|||||++|+++|..|++.|.+|+|||+ ...+||+|.|+||+|+|.++..+...+.....+.+|+.
T Consensus 15 ~~~dvvvIG~G~aG~~~a~~~~~~g~~v~~ie~---------~~~~GG~c~n~GciPsk~l~~~a~~~~~~~~~~~~g~~ 85 (479)
T PRK14727 15 LQLHVAIIGSGSAAFAAAIKAAEHGARVTIIEG---------ADVIGGCCVNVGCVPSKILIRAAQLAHQQRSNPFDGVE 85 (479)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEEc---------cCcceeEeccccccccHHHHHHHHHHHHHhhccccCcc
Confidence 359999999999999999999999999999992 34899999999999999999999888877777767775
Q ss_pred cCCCCCCChHHHHHHHHHHHHHHHH-HHHHHHHhC-CeEEEEeEEEEecCCEEEE---cC--EEEEeCeEEEcCCCCCCC
Q 008860 151 YGTEPQHDWSTLIANKNAELQRLTG-IYKNILINA-GITLIEGRGKIVDPHTVDV---DG--KLYSARHILISVGGRPFI 223 (551)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~v~~~~~~~~~i~~~~v~v---~g--~~~~~d~lviAtG~~p~~ 223 (551)
.. .+.++|..+..+....+.++.. .+...++.. +++++.|++.+++++++.+ ++ .++.||+||||||++|..
T Consensus 86 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~G~a~f~~~~~v~v~~~~g~~~~~~~d~lViATGs~p~~ 164 (479)
T PRK14727 86 AV-APSIDRGLLLHQQQARVEELRHAKYQSILDGNPALTLLKGYARFKDGNTLVVRLHDGGERVLAADRCLIATGSTPTI 164 (479)
T ss_pred cC-CCccCHHHHHHHHHHHHHHHhhhhHHHHHhhcCCeEEEEEEEEEecCCEEEEEeCCCceEEEEeCEEEEecCCCCCC
Confidence 42 4678999998888887777654 355666654 8999999999999988877 34 369999999999999999
Q ss_pred CCCCCCCc--eecchhhhcCCCCCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCCCCCHHHHHHHHHHHHhcCc
Q 008860 224 PDIPGSEY--AIDSDAALDLPSKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRDFVAEQMSLRGI 301 (551)
Q Consensus 224 p~i~g~~~--~~~~~~~~~~~~~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~Gv 301 (551)
|++||.+. .++.++.+.....+++++|||+|++|+|+|..|+++|.+|+++++. .+++.+++++.+.+.+.|++.||
T Consensus 165 p~i~G~~~~~~~~~~~~l~~~~~~k~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~-~~l~~~d~~~~~~l~~~L~~~GV 243 (479)
T PRK14727 165 PPIPGLMDTPYWTSTEALFSDELPASLTVIGSSVVAAEIAQAYARLGSRVTILARS-TLLFREDPLLGETLTACFEKEGI 243 (479)
T ss_pred CCCCCcCccceecchHHhccccCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEEcC-CCCCcchHHHHHHHHHHHHhCCC
Confidence 99999743 4666666666667899999999999999999999999999999885 57777999999999999999999
Q ss_pred EEEcCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCcCCCCCCCCccccCeeecCCCCeEeCCCCCCCCCcEEEeCc
Q 008860 302 EFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNTKNLGLEKVGVKMTKNGAIEVDEYSGTAVPSIWAVGD 381 (551)
Q Consensus 302 ~i~~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~t~~~~vya~GD 381 (551)
+++++++|++++.++++ +.+.+.++ ++++|.|++|+|+.||+.++.++.++++++++|+|.||+++||++|||||+||
T Consensus 244 ~i~~~~~V~~i~~~~~~-~~v~~~~g-~i~aD~VlvA~G~~pn~~~l~l~~~g~~~~~~G~i~Vd~~~~Ts~~~IyA~GD 321 (479)
T PRK14727 244 EVLNNTQASLVEHDDNG-FVLTTGHG-ELRAEKLLISTGRHANTHDLNLEAVGVTTDTSGAIVVNPAMETSAPDIYAAGD 321 (479)
T ss_pred EEEcCcEEEEEEEeCCE-EEEEEcCC-eEEeCEEEEccCCCCCccCCCchhhCceecCCCCEEECCCeecCCCCEEEeee
Confidence 99999999999876554 56666666 49999999999999999987788889999999999999999999999999999
Q ss_pred CCCCCCChHHHHHhHHHHHHHHcCCCCCCCCCCCccEEEecCCceEEeeCCHHHHHhcCCCeEEEEeeccCcccccccCC
Q 008860 382 VTDRINLTPVALMEGGALAKTLFQAEPTKPDYSAVPSAVFSQPPIGQVGLSEEQAIQEYGDIDVFTANFRPLKATLSGLP 461 (551)
Q Consensus 382 ~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~~~~~~~~~~~~~vGl~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 461 (551)
|++.+.+++.|..||+++|.||+|.+. ..++..+|+++|++|+++++|+||+||++.+.++.+...++....+++....
T Consensus 322 ~~~~~~~~~~A~~~G~~aa~~i~g~~~-~~~~~~~p~~~~~~p~ia~vGlte~~a~~~g~~~~~~~~~~~~~~~~~~~~~ 400 (479)
T PRK14727 322 CSDLPQFVYVAAAAGSRAGINMTGGNA-TLDLSAMPAVIFTDPQVATVGLSEAKAHLSGIETISRVLTMENVPRALANFE 400 (479)
T ss_pred cCCcchhhhHHHHHHHHHHHHHcCCCc-ccccccCCcEEEecCceeeeeCCHHHHHHcCCceEEEEEEcccCchhhhcCC
Confidence 999888999999999999999998643 4567788999999999999999999999998788878777877777766667
Q ss_pred CcEEEEEEEECCCCeEEEEEEECCChhHHHHHHHHHHHCCCCHHHHccCcccCCCchHHHHHHHh
Q 008860 462 DRIFMKLVLCAKTNKVLGLHMCGEDAPEIVQGFAVAVKAGLTKADFDATVGVHPTAAEEFVTLRT 526 (551)
Q Consensus 462 ~~~~~kl~~~~~~~~ilG~~~~g~~~~e~i~~~~~~i~~~~~~~~l~~~~~~~pt~~e~~~~~~~ 526 (551)
+++|+||++|++|++|||+|++|+++.|+|+.+++||++++|++||.+++++|||++|++.++..
T Consensus 401 ~~g~~Kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~E~~~~~~~ 465 (479)
T PRK14727 401 TDGFIKLVAEEGTRKLIGAQILAHEGGELIQSAALAIHNRMTVEELADQLFPYLTMVEGLKLCAQ 465 (479)
T ss_pred CCeEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhcCCccCCChHHHHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999876554
|
|
| >PRK14694 putative mercuric reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-71 Score=585.79 Aligned_cols=440 Identities=31% Similarity=0.479 Sum_probs=386.0
Q ss_pred CCccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhhcc-CCCc
Q 008860 71 YDFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDESN-GFGW 149 (551)
Q Consensus 71 ~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~-~~g~ 149 (551)
.+|||+|||||+||++||..|++.|++|+||| ++.+||+|.|.||+|+|.++..++..+..+... .+|+
T Consensus 5 ~~~dviVIGaG~aG~~aA~~l~~~g~~v~lie----------~~~~GGtc~n~GciPsk~l~~~a~~~~~~~~~~~~~g~ 74 (468)
T PRK14694 5 NNLHIAVIGSGGSAMAAALKATERGARVTLIE----------RGTIGGTCVNIGCVPSKIMIRAAHIAHLRRESPFDDGL 74 (468)
T ss_pred CcCCEEEECCCHHHHHHHHHHHhCCCcEEEEE----------ccccccceecCCccccHHHHHHHHHHHHHhhccccCCc
Confidence 47999999999999999999999999999999 667999999999999999999888777666554 3455
Q ss_pred ccCCCCCCChHHHHHHHHHHHHHHHHH-HHHHHHh-CCeEEEEeEEEEecCCEEEE---cC--EEEEeCeEEEcCCCCCC
Q 008860 150 KYGTEPQHDWSTLIANKNAELQRLTGI-YKNILIN-AGITLIEGRGKIVDPHTVDV---DG--KLYSARHILISVGGRPF 222 (551)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~v~~~~~~~~~i~~~~v~v---~g--~~~~~d~lviAtG~~p~ 222 (551)
... .+.++|..++.+.++.+.++... +...+.+ .+++++.+++.++++..+.+ ++ .+++||+||||||++|+
T Consensus 75 ~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~v~~~~g~v~~id~~~~~V~~~~g~~~~~~~d~lViATGs~p~ 153 (468)
T PRK14694 75 SAQ-APVVDRSALLAQQQARVEELRESKYQSILRENAAITVLNGEARFVDERTLTVTLNDGGEQTVHFDRAFIGTGARPA 153 (468)
T ss_pred ccC-CCccCHHHHHHHHHHHHHHHhcccHHHHHhcCCCeEEEEEEEEEecCCEEEEEecCCCeEEEECCEEEEeCCCCCC
Confidence 422 45789999999998887776543 4455554 48999999999999887766 33 47999999999999999
Q ss_pred CCCCCCCCc--eecchhhhcCCCCCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCCCCCHHHHHHHHHHHHhcC
Q 008860 223 IPDIPGSEY--AIDSDAALDLPSKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRDFVAEQMSLRG 300 (551)
Q Consensus 223 ~p~i~g~~~--~~~~~~~~~~~~~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~G 300 (551)
.|++||.+. ++++++.+.+...+++++|||+|++|+|+|..|+++|.+|+++++ +++++.+++++.+.+.+.|++.|
T Consensus 154 ~p~i~G~~~~~~~~~~~~~~l~~~~~~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~-~~~l~~~~~~~~~~l~~~l~~~G 232 (468)
T PRK14694 154 EPPVPGLAETPYLTSTSALELDHIPERLLVIGASVVALELAQAFARLGSRVTVLAR-SRVLSQEDPAVGEAIEAAFRREG 232 (468)
T ss_pred CCCCCCCCCCceEcchhhhchhcCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEC-CCCCCCCCHHHHHHHHHHHHhCC
Confidence 999999753 567777777777789999999999999999999999999999987 56778889999999999999999
Q ss_pred cEEEcCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCcCCCCCCCCccccCeeecCCCCeEeCCCCCCCCCcEEEeC
Q 008860 301 IEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNTKNLGLEKVGVKMTKNGAIEVDEYSGTAVPSIWAVG 380 (551)
Q Consensus 301 v~i~~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~t~~~~vya~G 380 (551)
|++++++.+++++.+++. +.+.+.++ ++++|.|++|+|++|+++++.++..+++. ++|+|.||+++||++|||||+|
T Consensus 233 I~v~~~~~v~~i~~~~~~-~~v~~~~~-~i~~D~vi~a~G~~pn~~~l~l~~~g~~~-~~G~i~vd~~~~Ts~~~IyA~G 309 (468)
T PRK14694 233 IEVLKQTQASEVDYNGRE-FILETNAG-TLRAEQLLVATGRTPNTENLNLESIGVET-ERGAIRIDEHLQTTVSGIYAAG 309 (468)
T ss_pred CEEEeCCEEEEEEEcCCE-EEEEECCC-EEEeCEEEEccCCCCCcCCCCchhcCccc-CCCeEeeCCCcccCCCCEEEEe
Confidence 999999999999876543 55666555 59999999999999999987677788886 4789999999999999999999
Q ss_pred cCCCCCCChHHHHHhHHHHHHHHcCCCCCCCCCCCccEEEecCCceEEeeCCHHHHHhcCCCeEEEEeeccCcccccccC
Q 008860 381 DVTDRINLTPVALMEGGALAKTLFQAEPTKPDYSAVPSAVFSQPPIGQVGLSEEQAIQEYGDIDVFTANFRPLKATLSGL 460 (551)
Q Consensus 381 D~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~~~~~~~~~~~~~vGl~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 460 (551)
||++.+.+.+.|..||++||.||+|.+ ...++..+|.++|++|++++||+||+||++.+.++.+...++....+++...
T Consensus 310 D~~~~~~~~~~A~~~G~~aa~~i~~~~-~~~~~~~~p~~~~~~p~~a~vGlte~~a~~~g~~~~~~~~~~~~~~~~~~~~ 388 (468)
T PRK14694 310 DCTDQPQFVYVAAAGGSRAAINMTGGD-ASLDLSAMPEVIFTDPQVATVGLSEAEAQAQGYDTDSRTLDLENVPRALVNF 388 (468)
T ss_pred ecCCCcccHHHHHHHHHHHHHHhcCCC-cccccCCCCeEEECCCCeEEeeCCHHHHHHcCCceEEEEEecccchhhhhcC
Confidence 999999999999999999999999764 3467788999999999999999999999999878888888888888877777
Q ss_pred CCcEEEEEEEECCCCeEEEEEEECCChhHHHHHHHHHHHCCCCHHHHccCcccCCCchHHHHHHHh
Q 008860 461 PDRIFMKLVLCAKTNKVLGLHMCGEDAPEIVQGFAVAVKAGLTKADFDATVGVHPTAAEEFVTLRT 526 (551)
Q Consensus 461 ~~~~~~kl~~~~~~~~ilG~~~~g~~~~e~i~~~~~~i~~~~~~~~l~~~~~~~pt~~e~~~~~~~ 526 (551)
.+.+|+||++|++||+|||+|++|++++|+|+.+++||++++|++||.+++++|||++|.+.+...
T Consensus 389 ~~~g~~klv~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~~~ 454 (468)
T PRK14694 389 DTGGFIKMVAERGSGRLLGVQVVAGEAGELIQTAVMALRARMTVNEIADELFPYLTMVEGLKLCAQ 454 (468)
T ss_pred CCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhccccCCCchHHHHHHHHH
Confidence 789999999999999999999999999999999999999999999999999999999999876444
|
|
| >PRK06416 dihydrolipoamide dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-71 Score=585.51 Aligned_cols=439 Identities=35% Similarity=0.553 Sum_probs=395.3
Q ss_pred CCccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhhccCCCcc
Q 008860 71 YDFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDESNGFGWK 150 (551)
Q Consensus 71 ~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~ 150 (551)
.+|||+||||||||++||..|++.|++|+||| +..+||+|.+.||+|+|.++..++..+.......||+.
T Consensus 3 ~~yDvvVIGaGpaG~~aA~~aa~~G~~V~liE----------~~~~GG~c~~~gciP~k~l~~~~~~~~~~~~~~~~g~~ 72 (462)
T PRK06416 3 FEYDVIVIGAGPGGYVAAIRAAQLGLKVAIVE----------KEKLGGTCLNRGCIPSKALLHAAERADEARHSEDFGIK 72 (462)
T ss_pred ccccEEEECCCHHHHHHHHHHHHCCCcEEEEe----------ccccccceeecccCCcHHHHHhhhHHHHHHHHHhcCcc
Confidence 36999999999999999999999999999999 55599999999999999999999988888888888886
Q ss_pred cCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEeEEEEecCCEEEEc----CEEEEeCeEEEcCCCCCCCCCC
Q 008860 151 YGTEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIEGRGKIVDPHTVDVD----GKLYSARHILISVGGRPFIPDI 226 (551)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~i~~~~v~v~----g~~~~~d~lviAtG~~p~~p~i 226 (551)
.. ...++|..+.++.+...+.+...+...+++.+|+++.+++.+++++++.+. ++.+.||+||||||++|..|+
T Consensus 73 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~~~~~~v~~~~~~~~~~~d~lViAtGs~p~~~p- 150 (462)
T PRK06416 73 AE-NVGIDFKKVQEWKNGVVNRLTGGVEGLLKKNKVDIIRGEAKLVDPNTVRVMTEDGEQTYTAKNIILATGSRPRELP- 150 (462)
T ss_pred cC-CCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEEecCCCcEEEEeCEEEEeCCCCCCCCC-
Confidence 53 456899999999988888887777788888999999999999999888873 368999999999999997653
Q ss_pred CCCC----ceecchhhhcCCCCCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCCCCCHHHHHHHHHHHHhcCcE
Q 008860 227 PGSE----YAIDSDAALDLPSKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRDFVAEQMSLRGIE 302 (551)
Q Consensus 227 ~g~~----~~~~~~~~~~~~~~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~ 302 (551)
|.+ .++++++.+.+...+++++|||+|++|+|+|..|+++|.+|+++++.+.+++.+++++.+.+.+.|++.||+
T Consensus 151 -g~~~~~~~v~~~~~~~~~~~~~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~l~~~l~~~gV~ 229 (462)
T PRK06416 151 -GIEIDGRVIWTSDEALNLDEVPKSLVVIGGGYIGVEFASAYASLGAEVTIVEALPRILPGEDKEISKLAERALKKRGIK 229 (462)
T ss_pred -CCCCCCCeEEcchHhhCccccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCcCCcCCHHHHHHHHHHHHHcCCE
Confidence 432 367888888887788999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCcccEEEEEcCCceEEEEECCC---eEEEeeEEEEecCcCCCCCCCCccccCeeecCCCCeEeCCCCCCCCCcEEEe
Q 008860 303 FHTEESPQAILKSTDGSLSVKTNKG---TVDGFSHVMFATGRRPNTKNLGLEKVGVKMTKNGAIEVDEYSGTAVPSIWAV 379 (551)
Q Consensus 303 i~~~~~v~~i~~~~~~~~~V~~~~G---~~i~~d~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~t~~~~vya~ 379 (551)
++++++|++++.++++ +.+.+.+| +++++|.||+|+|++|++.+++++..+++++ +|+|.||+++||++|+|||+
T Consensus 230 i~~~~~V~~i~~~~~~-v~v~~~~gg~~~~i~~D~vi~a~G~~p~~~~l~l~~~gl~~~-~g~i~vd~~~~t~~~~VyAi 307 (462)
T PRK06416 230 IKTGAKAKKVEQTDDG-VTVTLEDGGKEETLEADYVLVAVGRRPNTENLGLEELGVKTD-RGFIEVDEQLRTNVPNIYAI 307 (462)
T ss_pred EEeCCEEEEEEEeCCE-EEEEEEeCCeeEEEEeCEEEEeeCCccCCCCCCchhcCCeec-CCEEeECCCCccCCCCEEEe
Confidence 9999999999876654 66766665 6799999999999999999877788999988 89999999999999999999
Q ss_pred CcCCCCCCChHHHHHhHHHHHHHHcCCCCCCCCCCCccEEEecCCceEEeeCCHHHHHhcCCCeEEEEeeccCccccccc
Q 008860 380 GDVTDRINLTPVALMEGGALAKTLFQAEPTKPDYSAVPSAVFSQPPIGQVGLSEEQAIQEYGDIDVFTANFRPLKATLSG 459 (551)
Q Consensus 380 GD~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~~~~~~~~~~~~~vGl~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 459 (551)
|||++.+++++.|..||+++|.||++... ..++..+|..+|++|+++++|++|+||++++.++.+...++....++...
T Consensus 308 GD~~~~~~~~~~A~~~g~~aa~ni~~~~~-~~~~~~~~~~~~~~~~~a~vG~te~~a~~~g~~~~~~~~~~~~~~~~~~~ 386 (462)
T PRK06416 308 GDIVGGPMLAHKASAEGIIAAEAIAGNPH-PIDYRGIPAVTYTHPEVASVGLTEAKAKEEGFDVKVVKFPFAGNGKALAL 386 (462)
T ss_pred eecCCCcchHHHHHHHHHHHHHHHcCCCC-CCCCCCCCeEEECCCceEEEeCCHHHHHhcCCCeEEEEEecCcChHhHhc
Confidence 99999888999999999999999998543 44577899999999999999999999999988888888888877777767
Q ss_pred CCCcEEEEEEEECCCCeEEEEEEECCChhHHHHHHHHHHHCCCCHHHHccCcccCCCchHHHHHHH
Q 008860 460 LPDRIFMKLVLCAKTNKVLGLHMCGEDAPEIVQGFAVAVKAGLTKADFDATVGVHPTAAEEFVTLR 525 (551)
Q Consensus 460 ~~~~~~~kl~~~~~~~~ilG~~~~g~~~~e~i~~~~~~i~~~~~~~~l~~~~~~~pt~~e~~~~~~ 525 (551)
+.+++|+||++|++|++|||+|++|+++.|+|+.+++||++++|++||.+++++|||++|.+.+..
T Consensus 387 ~~~~g~~kli~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~~ 452 (462)
T PRK06416 387 GETDGFVKLIFDKKDGEVLGAHMVGARASELIQEAQLAINWEATPEDLALTIHPHPTLSEALGEAA 452 (462)
T ss_pred CCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhCccCCCCHHHHHHHHH
Confidence 778899999999999999999999999999999999999999999999999999999999977543
|
|
| >PRK06912 acoL dihydrolipoamide dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-71 Score=582.40 Aligned_cols=439 Identities=29% Similarity=0.468 Sum_probs=393.9
Q ss_pred cEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhhccCCCcccC-
Q 008860 74 DLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDESNGFGWKYG- 152 (551)
Q Consensus 74 dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~~~- 152 (551)
+|+|||||+||++||.+|++.|++|+||| ++.+||+|.|.||+|+|.++..++..+..+....||+...
T Consensus 2 ~vvVIG~G~aG~~aA~~~~~~g~~V~lie----------~~~~GG~c~n~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~ 71 (458)
T PRK06912 2 KLVVIGGGPAGYVAAITAAQNGKNVTLID----------EADLGGTCLNEGCMPTKSLLESAEVHDKVKKANHFGITLPN 71 (458)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEE----------CCcccccCCCCccccchHHHHHHHHHHHHHHHHhcCccccC
Confidence 79999999999999999999999999999 6779999999999999999999998888888888888643
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEeEEEEecCCEEEE---cC-EEEEeCeEEEcCCCCCCCCCCCC
Q 008860 153 TEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIEGRGKIVDPHTVDV---DG-KLYSARHILISVGGRPFIPDIPG 228 (551)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~i~~~~v~v---~g-~~~~~d~lviAtG~~p~~p~i~g 228 (551)
....++|..+..+..+.++++.......+++.+++++.+++.+++++++.+ ++ +++.||+||||||++|+.|++++
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a~~~~~~~v~v~~~~~~~~~~~d~lviATGs~p~~~p~~~ 151 (458)
T PRK06912 72 GSISIDWKQMQARKSQIVTQLVQGIQYLMKKNKIKVIQGKASFETDHRVRVEYGDKEEVVDAEQFIIAAGSEPTELPFAP 151 (458)
T ss_pred CCCccCHHHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEEEEEEccCCEEEEeeCCCcEEEECCEEEEeCCCCCCCCCCCC
Confidence 345789999999999889888877888888899999999999999998887 33 47999999999999998888877
Q ss_pred CC--ceecchhhhcCCCCCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCCCCCHHHHHHHHHHHHhcCcEEEcC
Q 008860 229 SE--YAIDSDAALDLPSKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRDFVAEQMSLRGIEFHTE 306 (551)
Q Consensus 229 ~~--~~~~~~~~~~~~~~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~~~ 306 (551)
.+ .++++++.+.+...+++++|||+|++|+|+|..|.++|.+|+++++.+.+++.+++++.+.+.+.|++.||+++++
T Consensus 152 ~~~~~v~~~~~~~~~~~~~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~ll~~~d~e~~~~l~~~L~~~GI~i~~~ 231 (458)
T PRK06912 152 FDGKWIINSKHAMSLPSIPSSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQLLPGEDEDIAHILREKLENDGVKIFTG 231 (458)
T ss_pred CCCCeEEcchHHhCccccCCcEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCccccHHHHHHHHHHHHHCCCEEEEC
Confidence 53 4778888888888899999999999999999999999999999999999999899999999999999999999999
Q ss_pred cccEEEEEcCCceEEEEECCC-eEEEeeEEEEecCcCCCCCCCCccccCeeecCCCCeEeCCCCCCCCCcEEEeCcCCCC
Q 008860 307 ESPQAILKSTDGSLSVKTNKG-TVDGFSHVMFATGRRPNTKNLGLEKVGVKMTKNGAIEVDEYSGTAVPSIWAVGDVTDR 385 (551)
Q Consensus 307 ~~v~~i~~~~~~~~~V~~~~G-~~i~~d~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~t~~~~vya~GD~~~~ 385 (551)
++|++++.+++. +.+...++ +++++|.|++|+|++|+++.++++..+++++++| |.||+++||+.|||||+|||++.
T Consensus 232 ~~V~~i~~~~~~-v~~~~~g~~~~i~~D~vivA~G~~p~~~~l~l~~~gv~~~~~g-i~Vd~~~~ts~~~VyA~GD~~~~ 309 (458)
T PRK06912 232 AALKGLNSYKKQ-ALFEYEGSIQEVNAEFVLVSVGRKPRVQQLNLEKAGVQFSNKG-ISVNEHMQTNVPHIYACGDVIGG 309 (458)
T ss_pred CEEEEEEEcCCE-EEEEECCceEEEEeCEEEEecCCccCCCCCCchhcCceecCCC-EEeCCCeecCCCCEEEEeecCCC
Confidence 999999865543 44443322 3699999999999999998877788899888766 99999999999999999999998
Q ss_pred CCChHHHHHhHHHHHHHHcCCCCCCCCCCCccEEEecCCceEEeeCCHHHHHhcCCCeEEEEeeccCcccccccCCCcEE
Q 008860 386 INLTPVALMEGGALAKTLFQAEPTKPDYSAVPSAVFSQPPIGQVGLSEEQAIQEYGDIDVFTANFRPLKATLSGLPDRIF 465 (551)
Q Consensus 386 ~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~~~~~~~~~~~~~vGl~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (551)
+++++.|.+||+++|.|++|.+. ..++..+|.++|++|+++++|+||+||++++.++.+...+|....+++..+.+.+|
T Consensus 310 ~~la~~A~~~g~~aa~~~~g~~~-~~~~~~~p~~v~~~p~~a~vGlte~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~ 388 (458)
T PRK06912 310 IQLAHVAFHEGTTAALHASGEDV-KVNYHAVPRCIYTSPEIASVGLTEKQAREQYGDIRIGEFPFTANGKALIIGEQTGK 388 (458)
T ss_pred cccHHHHHHHHHHHHHHHcCCCC-CCCcCCCCeEEecCchhEEeeCCHHHHHHCCCCeEEEEEecCcchhHhhcCCCceE
Confidence 99999999999999999998543 45577899999999999999999999999887888887778877777777778999
Q ss_pred EEEEEECCCCeEEEEEEECCChhHHHHHHHHHHHCCCCHHHHccCcccCCCchHHHHHHH
Q 008860 466 MKLVLCAKTNKVLGLHMCGEDAPEIVQGFAVAVKAGLTKADFDATVGVHPTAAEEFVTLR 525 (551)
Q Consensus 466 ~kl~~~~~~~~ilG~~~~g~~~~e~i~~~~~~i~~~~~~~~l~~~~~~~pt~~e~~~~~~ 525 (551)
+||++|++|++|||+|++|+++.|+|+.+++||++++|++||.+++++|||++|++.+..
T Consensus 389 ~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~~ 448 (458)
T PRK06912 389 VKVIVEPKYQEIVGISIIGPRATELIGQGTVMIHTEVTADIMEDFIAAHPTLSEAIHEAL 448 (458)
T ss_pred EEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhCcccCCCHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999987643
|
|
| >PRK05976 dihydrolipoamide dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-71 Score=582.35 Aligned_cols=445 Identities=30% Similarity=0.497 Sum_probs=392.9
Q ss_pred CCCCccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhhccCCC
Q 008860 69 SHYDFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDESNGFG 148 (551)
Q Consensus 69 ~~~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g 148 (551)
|...|||+||||||||++||.+|++.|++|+||| +..+||+|.+.||+|+|.++..++..........+|
T Consensus 1 ~~~~ydvvVIG~GpaG~~aA~~aa~~G~~v~lie----------~~~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g 70 (472)
T PRK05976 1 MAKEYDLVIIGGGPGGYVAAIRAGQLGLKTALVE----------KGKLGGTCLHKGCIPSKALLHSAEVFQTAKKASPFG 70 (472)
T ss_pred CCccccEEEECCCHHHHHHHHHHHhCCCeEEEEE----------ccCCCcceEcCCcCchHHHHHHHHHHHHHHHHHhcC
Confidence 4567999999999999999999999999999999 667999999999999999999998888877777787
Q ss_pred cccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEeEEEEecCC-------EEEE---cC--EEEEeCeEEEc
Q 008860 149 WKYGTEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIEGRGKIVDPH-------TVDV---DG--KLYSARHILIS 216 (551)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~i~~~-------~v~v---~g--~~~~~d~lviA 216 (551)
+... .+.++|..+.+++++.++++.......+++.+|+++.+++.+++++ ++.+ ++ ..+.||+||||
T Consensus 71 ~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~a~~i~~~~~~~~~~~~~v~~~~g~~~~~~~d~lViA 149 (472)
T PRK05976 71 ISVS-GPALDFAKVQERKDGIVDRLTKGVAALLKKGKIDVFHGIGRILGPSIFSPMPGTVSVETETGENEMIIPENLLIA 149 (472)
T ss_pred ccCC-CCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEeCCCCCcCCceEEEEEeCCCceEEEEcCEEEEe
Confidence 7643 4578999999999988888887788888899999999999999988 7776 34 57999999999
Q ss_pred CCCCCCCCCCCCC--CceecchhhhcCCCCCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCCCCCHHHHHHHHH
Q 008860 217 VGGRPFIPDIPGS--EYAIDSDAALDLPSKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRDFVAE 294 (551)
Q Consensus 217 tG~~p~~p~i~g~--~~~~~~~~~~~~~~~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~ 294 (551)
||++|..++.... ..++++++.+.+...+++++|||+|++|+|+|..|+++|.+|+++++.+.+++.+++++.+.+.+
T Consensus 150 TGs~p~~~p~~~~~~~~~~~~~~~~~~~~~~~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~~il~~~~~~~~~~l~~ 229 (472)
T PRK05976 150 TGSRPVELPGLPFDGEYVISSDEALSLETLPKSLVIVGGGVIGLEWASMLADFGVEVTVVEAADRILPTEDAELSKEVAR 229 (472)
T ss_pred CCCCCCCCCCCCCCCceEEcchHhhCccccCCEEEEECCCHHHHHHHHHHHHcCCeEEEEEecCccCCcCCHHHHHHHHH
Confidence 9999975432222 24778888888877899999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCcEEEcCcccEEEEEc-CCceEEEEECCCe--EEEeeEEEEecCcCCCCCCCCccccCeeecCCCCeEeCCCCCC
Q 008860 295 QMSLRGIEFHTEESPQAILKS-TDGSLSVKTNKGT--VDGFSHVMFATGRRPNTKNLGLEKVGVKMTKNGAIEVDEYSGT 371 (551)
Q Consensus 295 ~l~~~Gv~i~~~~~v~~i~~~-~~~~~~V~~~~G~--~i~~d~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~t 371 (551)
.|++.||+++++++|++++.+ +++...+.+.+|+ ++++|.|++|+|++|+++.++++..++..+ +|+|.||++++|
T Consensus 230 ~l~~~gI~i~~~~~v~~i~~~~~~~~~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~l~~~~~~~~-~g~i~Vd~~l~t 308 (472)
T PRK05976 230 LLKKLGVRVVTGAKVLGLTLKKDGGVLIVAEHNGEEKTLEADKVLVSVGRRPNTEGIGLENTDIDVE-GGFIQIDDFCQT 308 (472)
T ss_pred HHHhcCCEEEeCcEEEEEEEecCCCEEEEEEeCCceEEEEeCEEEEeeCCccCCCCCCchhcCceec-CCEEEECCCccc
Confidence 999999999999999999752 3342334455663 699999999999999998766677777654 689999999999
Q ss_pred CCCcEEEeCcCCCCCCChHHHHHhHHHHHHHHcCCCCCCCCCCCccEEEecCCceEEeeCCHHHHHhcCCCeEEEEeecc
Q 008860 372 AVPSIWAVGDVTDRINLTPVALMEGGALAKTLFQAEPTKPDYSAVPSAVFSQPPIGQVGLSEEQAIQEYGDIDVFTANFR 451 (551)
Q Consensus 372 ~~~~vya~GD~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~~~~~~~~~~~~~vGl~~~~a~~~~~~~~~~~~~~~ 451 (551)
+.|+|||+|||++.+++++.|..||+++++||+|.+....++..+|.++|++|+++.+|++|+||++.+.++.+...++.
T Consensus 309 s~~~IyAiGD~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~~~~~~p~~a~vG~te~~a~~~g~~~~~~~~~~~ 388 (472)
T PRK05976 309 KERHIYAIGDVIGEPQLAHVAMAEGEMAAEHIAGKKPRPFDYAAIPACCYTDPEVASVGLTEEEAKEAGYDVKVGKFPFA 388 (472)
T ss_pred CCCCEEEeeecCCCcccHHHHHHHHHHHHHHHcCCCCCCCCCCCCCEEEECcCceEEEeCCHHHHHHcCCCEEEEEEECC
Confidence 99999999999998889999999999999999987645566778999999999999999999999999878888888888
Q ss_pred CcccccccCCCcEEEEEEEECCCCeEEEEEEECCChhHHHHHHHHHHHCCCCHHHHccCcccCCCchHHHHHHH
Q 008860 452 PLKATLSGLPDRIFMKLVLCAKTNKVLGLHMCGEDAPEIVQGFAVAVKAGLTKADFDATVGVHPTAAEEFVTLR 525 (551)
Q Consensus 452 ~~~~~~~~~~~~~~~kl~~~~~~~~ilG~~~~g~~~~e~i~~~~~~i~~~~~~~~l~~~~~~~pt~~e~~~~~~ 525 (551)
...++.....+++|+||++|+++++|||+|++|+++.|+|+.+++||++++|++||.+++++|||++|.+.+..
T Consensus 389 ~~~~~~~~~~~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~~ 462 (472)
T PRK05976 389 ANGKALTYGESDGFVKVVADRDTHDILGVQAVGPHVTELISEFALALELGARLWEVAGTIHPHPTLSEAIQEAA 462 (472)
T ss_pred cchhhhhcCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhCcccCCChHHHHHHHH
Confidence 77887767778999999999999999999999999999999999999999999999999999999999877644
|
|
| >PRK06292 dihydrolipoamide dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-71 Score=584.52 Aligned_cols=442 Identities=33% Similarity=0.491 Sum_probs=393.8
Q ss_pred CCccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhhccCCCcc
Q 008860 71 YDFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDESNGFGWK 150 (551)
Q Consensus 71 ~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~ 150 (551)
.+|||||||||++|++||.+|++.|++|+||| ++.+||+|.++||+|+|.++..++..+...+...||+.
T Consensus 2 ~~yDvvIIG~G~aGl~aA~~l~~~g~~v~lie----------~~~~GG~~~~~gc~psk~l~~~~~~~~~~~~~~~~gi~ 71 (460)
T PRK06292 2 EKYDVIVIGAGPAGYVAARRAAKLGKKVALIE----------KGPLGGTCLNVGCIPSKALIAAAEAFHEAKHAEEFGIH 71 (460)
T ss_pred CcccEEEECCCHHHHHHHHHHHHCCCeEEEEe----------CCccccceeccceeeHHHHHHHHHHHHHHHHHHhcCCC
Confidence 35999999999999999999999999999999 57799999999999999999999888888888888876
Q ss_pred cCCCCCCChHHHHHHHHHHHHHHHHHH-HHHHHhCCeEEEEeEEEEecCCEEEEcCEEEEeCeEEEcCCCCCCCCCCCCC
Q 008860 151 YGTEPQHDWSTLIANKNAELQRLTGIY-KNILINAGITLIEGRGKIVDPHTVDVDGKLYSARHILISVGGRPFIPDIPGS 229 (551)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~i~~~~v~v~g~~~~~d~lviAtG~~p~~p~i~g~ 229 (551)
.. ...++|..+..+..+....+...+ ...+...+++++.+.+.+++++++.++++++.||+||||||++ .|++||.
T Consensus 72 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~v~v~~~~~~~d~lIiATGs~--~p~ipg~ 148 (460)
T PRK06292 72 AD-GPKIDFKKVMARVRRERDRFVGGVVEGLEKKPKIDKIKGTARFVDPNTVEVNGERIEAKNIVIATGSR--VPPIPGV 148 (460)
T ss_pred cC-CCccCHHHHHHHHHHHHHHHhcchHHHHHhhCCCEEEEEEEEEccCCEEEECcEEEEeCEEEEeCCCC--CCCCCCC
Confidence 43 257899999999888888776665 5567778999999999999999998888899999999999999 4555554
Q ss_pred -----CceecchhhhcCCCCCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCCCCCHHHHHHHHHHHHhcCcEEE
Q 008860 230 -----EYAIDSDAALDLPSKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRDFVAEQMSLRGIEFH 304 (551)
Q Consensus 230 -----~~~~~~~~~~~~~~~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~ 304 (551)
..++++++.+.+...+++++|||+|++|+|+|..|+++|.+|+++++.+++++.+++++.+.+++.|+++ |+++
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~~~~~l~~~-I~i~ 227 (460)
T PRK06292 149 WLILGDRLLTSDDAFELDKLPKSLAVIGGGVIGLELGQALSRLGVKVTVFERGDRILPLEDPEVSKQAQKILSKE-FKIK 227 (460)
T ss_pred cccCCCcEECchHHhCccccCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCcchhHHHHHHHHHHHhhc-cEEE
Confidence 2467788888888889999999999999999999999999999999999999989999999999999999 9999
Q ss_pred cCcccEEEEEcCCceEEEEECCC--eEEEeeEEEEecCcCCCCCCCCccccCeeecCCCCeEeCCCCCCCCCcEEEeCcC
Q 008860 305 TEESPQAILKSTDGSLSVKTNKG--TVDGFSHVMFATGRRPNTKNLGLEKVGVKMTKNGAIEVDEYSGTAVPSIWAVGDV 382 (551)
Q Consensus 305 ~~~~v~~i~~~~~~~~~V~~~~G--~~i~~d~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~t~~~~vya~GD~ 382 (551)
+++++++++.+++..+.+++.++ +++++|.|++|+|++|+++.+.++..+++++++|+|.||+++||++|||||+|||
T Consensus 228 ~~~~v~~i~~~~~~~v~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~g~~~~~~g~i~vd~~~~ts~~~IyA~GD~ 307 (460)
T PRK06292 228 LGAKVTSVEKSGDEKVEELEKGGKTETIEADYVLVATGRRPNTDGLGLENTGIELDERGRPVVDEHTQTSVPGIYAAGDV 307 (460)
T ss_pred cCCEEEEEEEcCCceEEEEEcCCceEEEEeCEEEEccCCccCCCCCCcHhhCCEecCCCcEeECCCcccCCCCEEEEEec
Confidence 99999999876542244444333 4699999999999999999877888999999999999999999999999999999
Q ss_pred CCCCCChHHHHHhHHHHHHHHcCCCCCCCCCCCccEEEecCCceEEeeCCHHHHHhcCCCeEEEEeeccCcccccccCCC
Q 008860 383 TDRINLTPVALMEGGALAKTLFQAEPTKPDYSAVPSAVFSQPPIGQVGLSEEQAIQEYGDIDVFTANFRPLKATLSGLPD 462 (551)
Q Consensus 383 ~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~~~~~~~~~~~~~vGl~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 462 (551)
++.+++++.|..||+++|.||++......++..+|+.+|++|+++++|+||++|++.+.++.+...++..+.+++..+.+
T Consensus 308 ~~~~~~~~~A~~qg~~aa~~i~~~~~~~~~~~~~p~~~~~~~~~a~vG~te~~a~~~g~~~~~~~~~~~~~~~~~~~~~~ 387 (460)
T PRK06292 308 NGKPPLLHEAADEGRIAAENAAGDVAGGVRYHPIPSVVFTDPQIASVGLTEEELKAAGIDYVVGEVPFEAQGRARVMGKN 387 (460)
T ss_pred CCCccchhHHHHHHHHHHHHhcCCCCCCcCCCCCCeEEECCCccEEeECCHHHHHhcCCCeEEEEEecccchHHHhcCCC
Confidence 99888999999999999999998533445677899999999999999999999999887888888888888887767778
Q ss_pred cEEEEEEEECCCCeEEEEEEECCChhHHHHHHHHHHHCCCCHHHHccCcccCCCchHHHHHHHh
Q 008860 463 RIFMKLVLCAKTNKVLGLHMCGEDAPEIVQGFAVAVKAGLTKADFDATVGVHPTAAEEFVTLRT 526 (551)
Q Consensus 463 ~~~~kl~~~~~~~~ilG~~~~g~~~~e~i~~~~~~i~~~~~~~~l~~~~~~~pt~~e~~~~~~~ 526 (551)
.+|+||++|++|++|||+|++|+++.|+|+.+++||++++|++||.+++++|||++|++.++..
T Consensus 388 ~g~~klv~d~~~~~ilG~~~vg~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~~~ 451 (460)
T PRK06292 388 DGFVKVYADKKTGRLLGAHIIGPDAEHLIHLLAWAMQQGLTVEDLLRMPFYHPTLSEGLRTALR 451 (460)
T ss_pred CeEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhCccCCCCHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999887543
|
|
| >PTZ00052 thioredoxin reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-71 Score=587.92 Aligned_cols=460 Identities=38% Similarity=0.643 Sum_probs=391.8
Q ss_pred CCCCccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhh-ccCC
Q 008860 69 SHYDFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDE-SNGF 147 (551)
Q Consensus 69 ~~~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~-~~~~ 147 (551)
|+.+|||+||||||||++||.+|++.|++|+|||+...+ .......+||+|.|+||+|+|.++..++.....++ ...|
T Consensus 2 ~~~~yDviVIG~GpaG~~AA~~aa~~G~~V~lie~~~~~-~~~~~~~~GG~C~n~gciPsK~l~~~a~~~~~~~~~~~~~ 80 (499)
T PTZ00052 2 LTFMYDLVVIGGGSGGMAAAKEAAAHGKKVALFDYVKPS-TQGTKWGLGGTCVNVGCVPKKLMHYAANIGSIFHHDSQMY 80 (499)
T ss_pred CccccCEEEECCCHHHHHHHHHHHhCCCeEEEEeccCCC-CccccccccceeccccccchHHHHHHHHHHHHHHhHHhcC
Confidence 344699999999999999999999999999999931000 00111248999999999999999999888776653 4567
Q ss_pred CcccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEeEEEEecCCEEEE-c---CEEEEeCeEEEcCCCCCCC
Q 008860 148 GWKYGTEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIEGRGKIVDPHTVDV-D---GKLYSARHILISVGGRPFI 223 (551)
Q Consensus 148 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~i~~~~v~v-~---g~~~~~d~lviAtG~~p~~ 223 (551)
|+... . .++|.++.++....++++...+...++..+|+++.+++.+.+++++.+ + +..+.||+||||||++|..
T Consensus 81 g~~~~-~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~i~g~a~~~~~~~v~v~~~~~~~~i~~d~lIIATGs~p~~ 158 (499)
T PTZ00052 81 GWKTS-S-SFNWGKLVTTVQNHIRSLNFSYRTGLRSSKVEYINGLAKLKDEHTVSYGDNSQEETITAKYILIATGGRPSI 158 (499)
T ss_pred CCCCC-C-CcCHHHHHHHHHHHHHHhhHHHHHHhhhcCcEEEEEEEEEccCCEEEEeeCCCceEEECCEEEEecCCCCCC
Confidence 77543 2 789999999999998888777777777789999999999999999887 2 3579999999999999998
Q ss_pred CC-CCCCC-ceecchhhhcCCCCCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCCCCCHHHHHHHHHHHHhcCc
Q 008860 224 PD-IPGSE-YAIDSDAALDLPSKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRDFVAEQMSLRGI 301 (551)
Q Consensus 224 p~-i~g~~-~~~~~~~~~~~~~~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~Gv 301 (551)
|+ +||.+ ..+++++++.+...+++++|||+|++|+|+|..|+++|.+||++.+. .+++.+++++.+.+++.|+++||
T Consensus 159 p~~i~G~~~~~~~~~~~~~~~~~~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~-~~l~~~d~~~~~~l~~~l~~~GV 237 (499)
T PTZ00052 159 PEDVPGAKEYSITSDDIFSLSKDPGKTLIVGASYIGLETAGFLNELGFDVTVAVRS-IPLRGFDRQCSEKVVEYMKEQGT 237 (499)
T ss_pred CCCCCCccceeecHHHHhhhhcCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcC-cccccCCHHHHHHHHHHHHHcCC
Confidence 85 99975 46788888888878899999999999999999999999999999874 66778999999999999999999
Q ss_pred EEEcCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCcCCCCCCCCccccCeeecCCCCeEeCCCCCCCCCcEEEeCc
Q 008860 302 EFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNTKNLGLEKVGVKMTKNGAIEVDEYSGTAVPSIWAVGD 381 (551)
Q Consensus 302 ~i~~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~t~~~~vya~GD 381 (551)
++++++.+.+++..++. +.+.+.+|+++++|.|++|+|++||+++++++..+++++++|++.+++. +|++|+|||+||
T Consensus 238 ~i~~~~~v~~v~~~~~~-~~v~~~~g~~i~~D~vl~a~G~~pn~~~l~l~~~g~~~~~~G~ii~~~~-~Ts~p~IyAiGD 315 (499)
T PTZ00052 238 LFLEGVVPINIEKMDDK-IKVLFSDGTTELFDTVLYATGRKPDIKGLNLNAIGVHVNKSNKIIAPND-CTNIPNIFAVGD 315 (499)
T ss_pred EEEcCCeEEEEEEcCCe-EEEEECCCCEEEcCEEEEeeCCCCCccccCchhcCcEECCCCCEeeCCC-cCCCCCEEEEEE
Confidence 99999999999875544 6677888888999999999999999998777889999999998877777 999999999999
Q ss_pred CCC-CCCChHHHHHhHHHHHHHHcCCCCCCCCCCCccEEEecCCceEEeeCCHHHHHhcC--CCeEEEEeeccCcccccc
Q 008860 382 VTD-RINLTPVALMEGGALAKTLFQAEPTKPDYSAVPSAVFSQPPIGQVGLSEEQAIQEY--GDIDVFTANFRPLKATLS 458 (551)
Q Consensus 382 ~~~-~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~~~~~~~~~~~~~vGl~~~~a~~~~--~~~~~~~~~~~~~~~~~~ 458 (551)
|+. .+.+++.|.+||+++|+||++....+.++..+|+++|++|++++||+||+||++++ .++.+...+|.....+..
T Consensus 316 v~~~~~~l~~~A~~~g~~aa~ni~g~~~~~~~~~~~p~~ift~p~ia~vGlte~~A~~~~~~~~~~~~~~~~~~~~~~~~ 395 (499)
T PTZ00052 316 VVEGRPELTPVAIKAGILLARRLFKQSNEFIDYTFIPTTIFTPIEYGACGYSSEAAIAKYGEDDIEEYLQEFNTLEIAAV 395 (499)
T ss_pred ecCCCcccHHHHHHHHHHHHHHHhCCCCCcCccccCCeEEecCCcceeecCCHHHHHHhcCCCCEEEEEeecccchhhcc
Confidence 995 57899999999999999999866556778889999999999999999999999874 357777666654332211
Q ss_pred c---------------CCCcEEEEEEEEC-CCCeEEEEEEECCChhHHHHHHHHHHHCCCCHHHHccCcccCCCchHHHH
Q 008860 459 G---------------LPDRIFMKLVLCA-KTNKVLGLHMCGEDAPEIVQGFAVAVKAGLTKADFDATVGVHPTAAEEFV 522 (551)
Q Consensus 459 ~---------------~~~~~~~kl~~~~-~~~~ilG~~~~g~~~~e~i~~~~~~i~~~~~~~~l~~~~~~~pt~~e~~~ 522 (551)
. ..+.||+||++|+ ++++|||+|++|++|+|+|+.+++||++++|++||.+++++|||++|++.
T Consensus 396 ~~~~~~~~~~~~~~~~~~~~g~~Kli~~~~~~~~IlG~~ivg~~A~elI~~~~~ai~~~~t~~~l~~~~~~hPt~sE~~~ 475 (499)
T PTZ00052 396 HREKHERARKDEYDFDVSSNCLAKLVCVKSEDNKVVGFHFVGPNAGEITQGFSLALKLGAKKSDFDSMIGIHPTDAEVFM 475 (499)
T ss_pred ccccccccccccccccccCCceEEEEEecCCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcccccCCCCchhhE
Confidence 1 1267999999997 48999999999999999999999999999999999999999999999988
Q ss_pred HHHhhhhhhcCC
Q 008860 523 TLRTPTRKIRKS 534 (551)
Q Consensus 523 ~~~~~~~~~~~~ 534 (551)
++....|...-+
T Consensus 476 ~~~~~~~~~~~~ 487 (499)
T PTZ00052 476 NLSVTRRSGESF 487 (499)
T ss_pred EEEeeccCCCCh
Confidence 877777754433
|
|
| >PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-70 Score=575.09 Aligned_cols=426 Identities=28% Similarity=0.464 Sum_probs=373.9
Q ss_pred CccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhhccCCCccc
Q 008860 72 DFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDESNGFGWKY 151 (551)
Q Consensus 72 ~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~~ 151 (551)
+|||+|||||+||++||.+|++.|++|+|||+ ....+||+|.+.||+|++.++....
T Consensus 3 ~yDvvVIGgGpaGl~aA~~la~~g~~V~lie~--------~~~~~GG~~~~~gcip~k~l~~~~~--------------- 59 (441)
T PRK08010 3 KYQAVIIGFGKAGKTLAVTLAKAGWRVALIEQ--------SNAMYGGTCINIGCIPTKTLVHDAQ--------------- 59 (441)
T ss_pred cCCEEEECCCHhHHHHHHHHHHCCCeEEEEcC--------CCCccceeEeeccccchHHHHHHhc---------------
Confidence 59999999999999999999999999999992 0125799999999999998875542
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHHH-HHHhCCeEEEEeEEEEecCCEEEE---cCE-EEEeCeEEEcCCCCCCCCCC
Q 008860 152 GTEPQHDWSTLIANKNAELQRLTGIYKN-ILINAGITLIEGRGKIVDPHTVDV---DGK-LYSARHILISVGGRPFIPDI 226 (551)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~i~~~~v~v---~g~-~~~~d~lviAtG~~p~~p~i 226 (551)
...+|.....+.......+...... +.+..+++++.+++.+++++.+.+ ++. ++.||+||||||++|..|++
T Consensus 60 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~i~~~~~~v~~~~g~~~~~~d~lviATGs~p~~p~i 136 (441)
T PRK08010 60 ---QHTDFVRAIQRKNEVVNFLRNKNFHNLADMPNIDVIDGQAEFINNHSLRVHRPEGNLEIHGEKIFINTGAQTVVPPI 136 (441)
T ss_pred ---cCCCHHHHHHHHHHHHHHHHHhHHHHHhhcCCcEEEEEEEEEecCCEEEEEeCCCeEEEEeCEEEEcCCCcCCCCCC
Confidence 1346777777666665555433323 334459999999999999888776 454 69999999999999999999
Q ss_pred CCCC---ceecchhhhcCCCCCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCCCCCHHHHHHHHHHHHhcCcEE
Q 008860 227 PGSE---YAIDSDAALDLPSKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRDFVAEQMSLRGIEF 303 (551)
Q Consensus 227 ~g~~---~~~~~~~~~~~~~~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i 303 (551)
||.+ .++++++++.+...+++++|||+|++|+|+|..|.++|.+|+++++.+.+++.+++++.+.+.+.|++.||++
T Consensus 137 ~G~~~~~~v~~~~~~~~~~~~~~~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~l~~~l~~~gV~v 216 (441)
T PRK08010 137 PGITTTPGVYDSTGLLNLKELPGHLGILGGGYIGVEFASMFANFGSKVTILEAASLFLPREDRDIADNIATILRDQGVDI 216 (441)
T ss_pred CCccCCCCEEChhHhhcccccCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCCcCHHHHHHHHHHHHhCCCEE
Confidence 9964 3778888888777889999999999999999999999999999999999999899999999999999999999
Q ss_pred EcCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCcCCCCCCCCccccCeeecCCCCeEeCCCCCCCCCcEEEeCcCC
Q 008860 304 HTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNTKNLGLEKVGVKMTKNGAIEVDEYSGTAVPSIWAVGDVT 383 (551)
Q Consensus 304 ~~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~t~~~~vya~GD~~ 383 (551)
+++++|++++.+++. +.+.+.+++ +++|.|++|+|++|+++++.++.++++++++|+|.||+++||++|||||+|||+
T Consensus 217 ~~~~~v~~i~~~~~~-v~v~~~~g~-i~~D~vl~a~G~~pn~~~l~~~~~gl~~~~~G~i~vd~~~~Ts~~~IyA~GD~~ 294 (441)
T PRK08010 217 ILNAHVERISHHENQ-VQVHSEHAQ-LAVDALLIASGRQPATASLHPENAGIAVNERGAIVVDKYLHTTADNIWAMGDVT 294 (441)
T ss_pred EeCCEEEEEEEcCCE-EEEEEcCCe-EEeCEEEEeecCCcCCCCcCchhcCcEECCCCcEEECCCcccCCCCEEEeeecC
Confidence 999999999876544 566666664 999999999999999998777888999998999999999999999999999999
Q ss_pred CCCCChHHHHHhHHHHHHHHcCC-CCCCCCCCCccEEEecCCceEEeeCCHHHHHhcCCCeEEEEeeccCcccccccCCC
Q 008860 384 DRINLTPVALMEGGALAKTLFQA-EPTKPDYSAVPSAVFSQPPIGQVGLSEEQAIQEYGDIDVFTANFRPLKATLSGLPD 462 (551)
Q Consensus 384 ~~~~~~~~A~~~g~~aa~~i~g~-~~~~~~~~~~~~~~~~~~~~~~vGl~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 462 (551)
+.+++++.|..||+++++||+|. .....++..+|.++|++|+++++|+||+||++.+.++.+...++....++...+.+
T Consensus 295 ~~~~~~~~a~~~~~~~~~~~~g~~~~~~~~~~~~p~~~~~~p~ia~vGlte~~a~~~g~~~~~~~~~~~~~~~~~~~~~~ 374 (441)
T PRK08010 295 GGLQFTYISLDDYRIVRDELLGEGKRSTDDRKNVPYSVFMTPPLSRVGMTEEQARESGADIQVVTLPVAAIPRARVMNDT 374 (441)
T ss_pred CCccchhHHHHHHHHHHHHHcCCCCcccCccCCCCEEEECCCCceeeeCCHHHHHHcCCCeEEEEEecCcChhhhhcCCC
Confidence 99999999999999999999985 33345677899999999999999999999999988888888888888888777788
Q ss_pred cEEEEEEEECCCCeEEEEEEECCChhHHHHHHHHHHHCCCCHHHHccCcccCCCchHHHHHHH
Q 008860 463 RIFMKLVLCAKTNKVLGLHMCGEDAPEIVQGFAVAVKAGLTKADFDATVGVHPTAAEEFVTLR 525 (551)
Q Consensus 463 ~~~~kl~~~~~~~~ilG~~~~g~~~~e~i~~~~~~i~~~~~~~~l~~~~~~~pt~~e~~~~~~ 525 (551)
++|+||++|++||+|||+|++|+++.|+|+.++++|++++|++||.+.+++|||++|.+.++.
T Consensus 375 ~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~~ 437 (441)
T PRK08010 375 RGVLKAIVDNKTQRILGASLLCVDSHEMINIVKMVMDAGLPYSILRDQIFTHPSMSESLNDLF 437 (441)
T ss_pred ceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhccccCCchHHHHHHHH
Confidence 899999999999999999999999999999999999999999999999999999999987653
|
|
| >PRK06327 dihydrolipoamide dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-70 Score=577.77 Aligned_cols=451 Identities=29% Similarity=0.444 Sum_probs=393.5
Q ss_pred CCCCccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhhc-cCC
Q 008860 69 SHYDFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDES-NGF 147 (551)
Q Consensus 69 ~~~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~-~~~ 147 (551)
|..+||++|||||+||++||.++++.|.+|+|||+... ......+||+|.|+||+|+|.++..++....+.+. ..+
T Consensus 1 ~~~~~DviIIG~G~aG~~aA~~~~~~g~~v~lie~~~~---~~g~~~~Gg~c~n~gc~P~k~l~~~a~~~~~~~~~~~~~ 77 (475)
T PRK06327 1 MSKQFDVVVIGAGPGGYVAAIRAAQLGLKVACIEAWKN---PKGKPALGGTCLNVGCIPSKALLASSEEFENAGHHFADH 77 (475)
T ss_pred CCcceeEEEECCCHHHHHHHHHHHhCCCeEEEEecccC---CCCCCCcCCccccccccHHHHHHHHHHHHHHHHhhHHhc
Confidence 34469999999999999999999999999999992000 00126799999999999999999988877766654 667
Q ss_pred CcccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEeEEEEec----CCEEEEc---CEEEEeCeEEEcCCCC
Q 008860 148 GWKYGTEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIEGRGKIVD----PHTVDVD---GKLYSARHILISVGGR 220 (551)
Q Consensus 148 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~i~----~~~v~v~---g~~~~~d~lviAtG~~ 220 (551)
|+... ...++|..+.++..+..+.+...+..+++..+|+++.+++.+++ .+++.++ +++++||+||||||++
T Consensus 78 G~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~v~v~~~~~~~~~~d~lViATGs~ 156 (475)
T PRK06327 78 GIHVD-GVKIDVAKMIARKDKVVKKMTGGIEGLFKKNKITVLKGRGSFVGKTDAGYEIKVTGEDETVITAKHVIIATGSE 156 (475)
T ss_pred CccCC-CCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEecCCCCCCEEEEecCCCeEEEeCEEEEeCCCC
Confidence 77643 35789999999999888888888888888899999999999987 7788872 4589999999999999
Q ss_pred CCCCC-CCCC-CceecchhhhcCCCCCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCCCCCHHHHHHHHHHHHh
Q 008860 221 PFIPD-IPGS-EYAIDSDAALDLPSKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRDFVAEQMSL 298 (551)
Q Consensus 221 p~~p~-i~g~-~~~~~~~~~~~~~~~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~ 298 (551)
|+.++ ++.. ..++++++++.+...+++++|||+|++|+|+|..|+++|.+|+++++.+.+++.+++++.+.+.+.|++
T Consensus 157 p~~~p~~~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~~~~~l~~ 236 (475)
T PRK06327 157 PRHLPGVPFDNKIILDNTGALNFTEVPKKLAVIGAGVIGLELGSVWRRLGAEVTILEALPAFLAAADEQVAKEAAKAFTK 236 (475)
T ss_pred CCCCCCCCCCCceEECcHHHhcccccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCccCCcCCHHHHHHHHHHHHH
Confidence 97544 3322 246788888888778999999999999999999999999999999999999888999999999999999
Q ss_pred cCcEEEcCcccEEEEEcCCceEEEEECC--C--eEEEeeEEEEecCcCCCCCCCCccccCeeecCCCCeEeCCCCCCCCC
Q 008860 299 RGIEFHTEESPQAILKSTDGSLSVKTNK--G--TVDGFSHVMFATGRRPNTKNLGLEKVGVKMTKNGAIEVDEYSGTAVP 374 (551)
Q Consensus 299 ~Gv~i~~~~~v~~i~~~~~~~~~V~~~~--G--~~i~~d~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~t~~~ 374 (551)
+||+++++++|++++.++++ +.+.+.+ | +++++|.|++|+|++|+++.+.++..+++++++|+|.||+++||+.|
T Consensus 237 ~gi~i~~~~~v~~i~~~~~~-v~v~~~~~~g~~~~i~~D~vl~a~G~~p~~~~l~~~~~g~~~~~~G~i~vd~~~~Ts~~ 315 (475)
T PRK06327 237 QGLDIHLGVKIGEIKTGGKG-VSVAYTDADGEAQTLEVDKLIVSIGRVPNTDGLGLEAVGLKLDERGFIPVDDHCRTNVP 315 (475)
T ss_pred cCcEEEeCcEEEEEEEcCCE-EEEEEEeCCCceeEEEcCEEEEccCCccCCCCCCcHhhCceeCCCCeEeECCCCccCCC
Confidence 99999999999999876555 5566544 3 46999999999999999997667888999999999999999999999
Q ss_pred cEEEeCcCCCCCCChHHHHHhHHHHHHHHcCCCCCCCCCCCccEEEecCCceEEeeCCHHHHHhcCCCeEEEEeeccCcc
Q 008860 375 SIWAVGDVTDRINLTPVALMEGGALAKTLFQAEPTKPDYSAVPSAVFSQPPIGQVGLSEEQAIQEYGDIDVFTANFRPLK 454 (551)
Q Consensus 375 ~vya~GD~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~~~~~~~~~~~~~vGl~~~~a~~~~~~~~~~~~~~~~~~ 454 (551)
+|||+|||+..+.+++.|..||+++|+||+|... ..++..+|+.+|++|+++++|++|++|++.+.++.+...++....
T Consensus 316 ~VyA~GD~~~~~~~~~~A~~~G~~aa~~i~g~~~-~~~~~~~p~~~~~~pe~a~vGlte~~a~~~g~~~~~~~~~~~~~~ 394 (475)
T PRK06327 316 NVYAIGDVVRGPMLAHKAEEEGVAVAERIAGQKG-HIDYNTIPWVIYTSPEIAWVGKTEQQLKAEGVEYKAGKFPFMANG 394 (475)
T ss_pred CEEEEEeccCCcchHHHHHHHHHHHHHHHcCCCC-CCCCCCCCeEEeCCcceEEEeCCHHHHHHcCCCEEEEEEcccccc
Confidence 9999999999888999999999999999998543 356778999999999999999999999998878888888887777
Q ss_pred cccccCCCcEEEEEEEECCCCeEEEEEEECCChhHHHHHHHHHHHCCCCHHHHccCcccCCCchHHHHHHH
Q 008860 455 ATLSGLPDRIFMKLVLCAKTNKVLGLHMCGEDAPEIVQGFAVAVKAGLTKADFDATVGVHPTAAEEFVTLR 525 (551)
Q Consensus 455 ~~~~~~~~~~~~kl~~~~~~~~ilG~~~~g~~~~e~i~~~~~~i~~~~~~~~l~~~~~~~pt~~e~~~~~~ 525 (551)
++...+.+.+|+||++|+++++|||+|++|+++.|+|+.+++||++++|++||.+++++|||++|.+.++.
T Consensus 395 ~~~~~~~~~g~~klv~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~~ 465 (475)
T PRK06327 395 RALAMGEPDGFVKIIADAKTDEILGVHVIGPNASELIAEAVVAMEFKASSEDIARICHAHPTLSEVWHEAA 465 (475)
T ss_pred hhhhcCCCCeEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcCCcCCCChHHHHHHHH
Confidence 77767778899999999999999999999999999999999999999999999999999999999987644
|
|
| >PRK13748 putative mercuric reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-70 Score=593.05 Aligned_cols=440 Identities=30% Similarity=0.454 Sum_probs=386.9
Q ss_pred CccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhhccC-CCcc
Q 008860 72 DFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDESNG-FGWK 150 (551)
Q Consensus 72 ~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~-~g~~ 150 (551)
+|||+||||||||++||..|++.|++|+||| +..+||+|.|+||+|+|.++..++........+. +|+.
T Consensus 98 ~~DvvVIG~GpaG~~aA~~~~~~G~~v~lie----------~~~~GG~c~n~gciPsk~l~~~~~~~~~~~~~~~~~g~~ 167 (561)
T PRK13748 98 PLHVAVIGSGGAAMAAALKAVEQGARVTLIE----------RGTIGGTCVNVGCVPSKIMIRAAHIAHLRRESPFDGGIA 167 (561)
T ss_pred CCCEEEECcCHHHHHHHHHHHhCCCeEEEEe----------cCcceeeccccCccccHHHHHHHHHHHHHhcccccCCcc
Confidence 6999999999999999999999999999999 6689999999999999999999887776665442 4665
Q ss_pred cCCCCCCChHHHHHHHHHHHHHHHHH-HHHHHHhC-CeEEEEeEEEEecCCEEEE---cC--EEEEeCeEEEcCCCCCCC
Q 008860 151 YGTEPQHDWSTLIANKNAELQRLTGI-YKNILINA-GITLIEGRGKIVDPHTVDV---DG--KLYSARHILISVGGRPFI 223 (551)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~v~~~~~~~~~i~~~~v~v---~g--~~~~~d~lviAtG~~p~~ 223 (551)
.. .+..+|..+.++....+..+... +...+.+. +|+++.+++.+++++++.+ ++ ..+.||+||||||++|..
T Consensus 168 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~v~~~~g~~~~~~~d~lviAtGs~p~~ 246 (561)
T PRK13748 168 AT-VPTIDRSRLLAQQQARVDELRHAKYEGILDGNPAITVLHGEARFKDDQTLIVRLNDGGERVVAFDRCLIATGASPAV 246 (561)
T ss_pred CC-CCccCHHHHHHHHHHHHHHHhcccHHHHHhccCCeEEEEEEEEEecCCEEEEEeCCCceEEEEcCEEEEcCCCCCCC
Confidence 32 45689999998888777776542 45556665 8999999999999988877 34 369999999999999999
Q ss_pred CCCCCCCc--eecchhhhcCCCCCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCCCCCHHHHHHHHHHHHhcCc
Q 008860 224 PDIPGSEY--AIDSDAALDLPSKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRDFVAEQMSLRGI 301 (551)
Q Consensus 224 p~i~g~~~--~~~~~~~~~~~~~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~Gv 301 (551)
|++||.+. +++..+.+.....+++++|||+|++|+|+|..|+++|.+|+++++. .+++.+|+++.+.+.+.|++.||
T Consensus 247 p~i~g~~~~~~~~~~~~~~~~~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~-~~l~~~d~~~~~~l~~~l~~~gI 325 (561)
T PRK13748 247 PPIPGLKETPYWTSTEALVSDTIPERLAVIGSSVVALELAQAFARLGSKVTILARS-TLFFREDPAIGEAVTAAFRAEGI 325 (561)
T ss_pred CCCCCCCccceEccHHHhhcccCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEecC-ccccccCHHHHHHHHHHHHHCCC
Confidence 99999764 5666666666667899999999999999999999999999999985 46777899999999999999999
Q ss_pred EEEcCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCcCCCCCCCCccccCeeecCCCCeEeCCCCCCCCCcEEEeCc
Q 008860 302 EFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNTKNLGLEKVGVKMTKNGAIEVDEYSGTAVPSIWAVGD 381 (551)
Q Consensus 302 ~i~~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~t~~~~vya~GD 381 (551)
++++++.+++++.+++. +.+.+.++ ++++|.|++|+|++||+.++.+++++++++++|+|.||+++||++|||||+||
T Consensus 326 ~i~~~~~v~~i~~~~~~-~~v~~~~~-~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~~g~i~vd~~~~Ts~~~IyA~GD 403 (561)
T PRK13748 326 EVLEHTQASQVAHVDGE-FVLTTGHG-ELRADKLLVATGRAPNTRSLALDAAGVTVNAQGAIVIDQGMRTSVPHIYAAGD 403 (561)
T ss_pred EEEcCCEEEEEEecCCE-EEEEecCC-eEEeCEEEEccCCCcCCCCcCchhcCceECCCCCEeECCCcccCCCCEEEeee
Confidence 99999999999876544 55666666 59999999999999999987778899999999999999999999999999999
Q ss_pred CCCCCCChHHHHHhHHHHHHHHcCCCCCCCCCCCccEEEecCCceEEeeCCHHHHHhcCCCeEEEEeeccCcccccccCC
Q 008860 382 VTDRINLTPVALMEGGALAKTLFQAEPTKPDYSAVPSAVFSQPPIGQVGLSEEQAIQEYGDIDVFTANFRPLKATLSGLP 461 (551)
Q Consensus 382 ~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~~~~~~~~~~~~~vGl~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 461 (551)
|++.+.+++.|..||++||.||+|.+. ..++..+|..+|++|+++++|++|++|++++.++.+...++....+++....
T Consensus 404 ~~~~~~~~~~A~~~g~~aa~~i~g~~~-~~~~~~~p~~~~~~p~~a~vGlte~~a~~~g~~~~~~~~~~~~~~~~~~~~~ 482 (561)
T PRK13748 404 CTDQPQFVYVAAAAGTRAAINMTGGDA-ALDLTAMPAVVFTDPQVATVGYSEAEAHHDGIETDSRTLTLDNVPRALANFD 482 (561)
T ss_pred cCCCccchhHHHHHHHHHHHHHcCCCc-ccCCCCCCeEEEccCCceeeeCCHHHHHHcCCCeEEEEEecccCchhhhcCC
Confidence 999999999999999999999998653 4567788999999999999999999999987788888887877777766667
Q ss_pred CcEEEEEEEECCCCeEEEEEEECCChhHHHHHHHHHHHCCCCHHHHccCcccCCCchHHHHHHHh
Q 008860 462 DRIFMKLVLCAKTNKVLGLHMCGEDAPEIVQGFAVAVKAGLTKADFDATVGVHPTAAEEFVTLRT 526 (551)
Q Consensus 462 ~~~~~kl~~~~~~~~ilG~~~~g~~~~e~i~~~~~~i~~~~~~~~l~~~~~~~pt~~e~~~~~~~ 526 (551)
..+|+||++|+++++|||+|++|+++.|+|+.++++|++++|++||.+++++|||++|.+.+...
T Consensus 483 ~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~Pt~~e~~~~~~~ 547 (561)
T PRK13748 483 TRGFIKLVIEEGSGRLIGVQAVAPEAGELIQTAALAIRNRMTVQELADQLFPYLTMVEGLKLAAQ 547 (561)
T ss_pred CCeEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhcccccCCchHHHHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999876554
|
|
| >PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-69 Score=563.09 Aligned_cols=425 Identities=30% Similarity=0.468 Sum_probs=376.9
Q ss_pred CccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCC-CCCCeeccCCCcchHHHHHhhhhhhHhhhccCCCcc
Q 008860 72 DFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTG-GVGGTCVLRGCVPKKLLVYASKFSHEFDESNGFGWK 150 (551)
Q Consensus 72 ~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~-~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~ 150 (551)
+|||+||||||||++||..|++.|++|+|||+ .. .+||+|.|.||+|++.++..++.
T Consensus 3 ~~dvvVIG~GpaG~~aA~~l~~~g~~V~liE~---------~~~~~GG~c~~~gciP~k~~~~~~~~------------- 60 (438)
T PRK07251 3 TYDLIVIGFGKAGKTLAAKLASAGKKVALVEE---------SKAMYGGTCINIGCIPTKTLLVAAEK------------- 60 (438)
T ss_pred ccCEEEECCCHHHHHHHHHHHhCCCEEEEEec---------CCcccceeeecCccccchHhhhhhhc-------------
Confidence 69999999999999999999999999999993 22 37999999999999998876642
Q ss_pred cCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEeEEEEecCCEEEEc----CEEEEeCeEEEcCCCCCCCCCC
Q 008860 151 YGTEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIEGRGKIVDPHTVDVD----GKLYSARHILISVGGRPFIPDI 226 (551)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~i~~~~v~v~----g~~~~~d~lviAtG~~p~~p~i 226 (551)
..+|..+..+......++.....+.+.+.+|+++.+++.+++++++.+. ...+.||+||||||++|+.|++
T Consensus 61 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~g~~~~~~~~~v~v~~~~~~~~~~~d~vViATGs~~~~p~i 135 (438)
T PRK07251 61 -----NLSFEQVMATKNTVTSRLRGKNYAMLAGSGVDLYDAEAHFVSNKVIEVQAGDEKIELTAETIVINTGAVSNVLPI 135 (438)
T ss_pred -----CCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEEeeCCCcEEEEcCEEEEeCCCCCCCCCC
Confidence 2477888887777777776666677888899999999999999988872 2479999999999999999999
Q ss_pred CCCC---ceecchhhhcCCCCCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCCCCCHHHHHHHHHHHHhcCcEE
Q 008860 227 PGSE---YAIDSDAALDLPSKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRDFVAEQMSLRGIEF 303 (551)
Q Consensus 227 ~g~~---~~~~~~~~~~~~~~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i 303 (551)
||.+ .++++.+++.+...+++++|||+|++|+|+|..|++.|.+|+++++.+.+++..++++.+.+.+.+++.||++
T Consensus 136 ~G~~~~~~v~~~~~~~~~~~~~~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~~~~~l~~~GI~i 215 (438)
T PRK07251 136 PGLADSKHVYDSTGIQSLETLPERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAASTILPREEPSVAALAKQYMEEDGITF 215 (438)
T ss_pred CCcCCCCcEEchHHHhcchhcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCccCCCCCHHHHHHHHHHHHHcCCEE
Confidence 9963 4788888888877899999999999999999999999999999999999998889999999999999999999
Q ss_pred EcCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCcCCCCCCCCccccCeeecCCCCeEeCCCCCCCCCcEEEeCcCC
Q 008860 304 HTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNTKNLGLEKVGVKMTKNGAIEVDEYSGTAVPSIWAVGDVT 383 (551)
Q Consensus 304 ~~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~t~~~~vya~GD~~ 383 (551)
+++++|++++.+++. +.+.. +|+++++|.|++|+|++|+++.++++..++.++++|+|.||+++||++|||||+|||+
T Consensus 216 ~~~~~V~~i~~~~~~-v~v~~-~g~~i~~D~viva~G~~p~~~~l~l~~~~~~~~~~g~i~vd~~~~t~~~~IyaiGD~~ 293 (438)
T PRK07251 216 LLNAHTTEVKNDGDQ-VLVVT-EDETYRFDALLYATGRKPNTEPLGLENTDIELTERGAIKVDDYCQTSVPGVFAVGDVN 293 (438)
T ss_pred EcCCEEEEEEecCCE-EEEEE-CCeEEEcCEEEEeeCCCCCcccCCchhcCcEECCCCcEEECCCcccCCCCEEEeeecC
Confidence 999999999875543 44443 5668999999999999999988777788888888899999999999999999999999
Q ss_pred CCCCChHHHHHhHHHHHHHHcCCCC-CCCCCCCccEEEecCCceEEeeCCHHHHHhcCCCeEEEEeeccCcccccccCCC
Q 008860 384 DRINLTPVALMEGGALAKTLFQAEP-TKPDYSAVPSAVFSQPPIGQVGLSEEQAIQEYGDIDVFTANFRPLKATLSGLPD 462 (551)
Q Consensus 384 ~~~~~~~~A~~~g~~aa~~i~g~~~-~~~~~~~~~~~~~~~~~~~~vGl~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 462 (551)
+.+.+.+.|..||++++.++++.+. ...++..+|+.+|++|+++++|++|++|++.+.++.+....+..+.++......
T Consensus 294 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~p~ia~vGlte~~a~~~g~~~~~~~~~~~~~~~~~~~~~~ 373 (438)
T PRK07251 294 GGPQFTYISLDDFRIVFGYLTGDGSYTLEDRGNVPTTMFITPPLSQVGLTEKEAKEAGLPYAVKELLVAAMPRAHVNNDL 373 (438)
T ss_pred CCcccHhHHHHHHHHHHHHHcCCCCccccccCCCCEEEECCCceEeeeCCHHHHHhcCCCeEEEEEECCcchhhhhcCCC
Confidence 9989999999999999999997643 233566799999999999999999999999887888888878777777667777
Q ss_pred cEEEEEEEECCCCeEEEEEEECCChhHHHHHHHHHHHCCCCHHHHccCcccCCCchHHHHHHH
Q 008860 463 RIFMKLVLCAKTNKVLGLHMCGEDAPEIVQGFAVAVKAGLTKADFDATVGVHPTAAEEFVTLR 525 (551)
Q Consensus 463 ~~~~kl~~~~~~~~ilG~~~~g~~~~e~i~~~~~~i~~~~~~~~l~~~~~~~pt~~e~~~~~~ 525 (551)
++|+||++|++|++|||+|++|++++|+|+.+++||++++|++||.+++++|||++|.+.++.
T Consensus 374 ~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~~ 436 (438)
T PRK07251 374 RGAFKVVVNTETKEILGATLFGEGSQEIINLITMAMDNKIPYTYFKKQIFTHPTMAENLNDLF 436 (438)
T ss_pred cEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcccccCCChHHHHHHHh
Confidence 899999999999999999999999999999999999999999999999999999999987653
|
|
| >TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-68 Score=561.83 Aligned_cols=443 Identities=34% Similarity=0.547 Sum_probs=396.3
Q ss_pred CccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhhccCCCccc
Q 008860 72 DFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDESNGFGWKY 151 (551)
Q Consensus 72 ~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~~ 151 (551)
+|||+|||||+||++||.+|++.|++|+||| +..+||+|.+.||+|+|.++..++..+.+.....+++..
T Consensus 1 ~yDvvVIG~G~aGl~aA~~la~~G~~v~lie----------~~~~GG~~~~~gc~Psk~l~~~~~~~~~~~~~~~~g~~~ 70 (461)
T TIGR01350 1 AYDVVVIGGGPGGYVAAIRAAQLGLKVALVE----------KEYLGGTCLNVGCIPTKALLHSAEVYDEIKHAKDYGIEV 70 (461)
T ss_pred CccEEEECCCHHHHHHHHHHHhCCCeEEEEe----------cCCCCCceeecCccchHHHHHHhhHHHHHHHHHhcCCCC
Confidence 3899999999999999999999999999999 677999999999999999999888877776666777654
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEeEEEEecCCEEEE---cC-EEEEeCeEEEcCCCCCCCCCCC
Q 008860 152 GTEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIEGRGKIVDPHTVDV---DG-KLYSARHILISVGGRPFIPDIP 227 (551)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~i~~~~v~v---~g-~~~~~d~lviAtG~~p~~p~i~ 227 (551)
. ...++|..+..+.....+++.......+++.+++++.+++.+++++.+.+ ++ ..+.||+||+|||++|+.|++|
T Consensus 71 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~v~~~~g~~~~~~d~lVlAtG~~p~~~~~~ 149 (461)
T TIGR01350 71 E-NVSVDWEKMQKRKNKVVKKLVGGVKGLLKKNKVTVIKGEAKFLDPGTVLVTGENGEETLTAKNIIIATGSRPRSLPGP 149 (461)
T ss_pred C-CCcCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEEecCCCcEEEEeCEEEEcCCCCCCCCCCC
Confidence 3 35789999999888888888888888888999999999999999988877 22 5799999999999999988876
Q ss_pred -CCC--ceecchhhhcCCCCCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCCCCCHHHHHHHHHHHHhcCcEEE
Q 008860 228 -GSE--YAIDSDAALDLPSKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRDFVAEQMSLRGIEFH 304 (551)
Q Consensus 228 -g~~--~~~~~~~~~~~~~~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~ 304 (551)
+.+ .++++++.+.+...+++++|||+|.+|+|+|..|++.|.+|+++++.+.+++.+++++.+.+.+.+++.||+++
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~~~~~l~~~gi~i~ 229 (461)
T TIGR01350 150 FDFDGEVVITSTGALNLKEVPESLVIIGGGVIGIEFASIFASLGSKVTVIEMLDRILPGEDAEVSKVVAKALKKKGVKIL 229 (461)
T ss_pred CCCCCceEEcchHHhccccCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCCCCCCCCHHHHHHHHHHHHHcCCEEE
Confidence 433 47888888888888999999999999999999999999999999999999998999999999999999999999
Q ss_pred cCcccEEEEEcCCceEEEEECCC--eEEEeeEEEEecCcCCCCCCCCccccCeeecCCCCeEeCCCCCCCCCcEEEeCcC
Q 008860 305 TEESPQAILKSTDGSLSVKTNKG--TVDGFSHVMFATGRRPNTKNLGLEKVGVKMTKNGAIEVDEYSGTAVPSIWAVGDV 382 (551)
Q Consensus 305 ~~~~v~~i~~~~~~~~~V~~~~G--~~i~~d~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~t~~~~vya~GD~ 382 (551)
++++|++++.++++ +.+.+.+| +++++|.|++|+|+.|++..+.++..+++++++|+|.||+++||+.|+|||+|||
T Consensus 230 ~~~~v~~i~~~~~~-v~v~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~~l~t~~~~IyaiGD~ 308 (461)
T TIGR01350 230 TNTKVTAVEKNDDQ-VVYENKGGETETLTGEKVLVAVGRKPNTEGLGLENLGVELDERGRIVVDEYMRTNVPGIYAIGDV 308 (461)
T ss_pred eCCEEEEEEEeCCE-EEEEEeCCcEEEEEeCEEEEecCCcccCCCCCcHhhCceECCCCcEeeCCCcccCCCCEEEeeec
Confidence 99999999876655 56776667 4799999999999999998555788899999999999999999999999999999
Q ss_pred CCCCCChHHHHHhHHHHHHHHcCCCCCCCCCCCccEEEecCCceEEeeCCHHHHHhcCCCeEEEEeeccCcccccccCCC
Q 008860 383 TDRINLTPVALMEGGALAKTLFQAEPTKPDYSAVPSAVFSQPPIGQVGLSEEQAIQEYGDIDVFTANFRPLKATLSGLPD 462 (551)
Q Consensus 383 ~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~~~~~~~~~~~~~vGl~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 462 (551)
++.+++++.|..||+++|+||.+......++..+|..+|++|+++.+|+++++|++.+.++.+...++....++.....+
T Consensus 309 ~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~~~~~~~~~a~vG~~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~ 388 (461)
T TIGR01350 309 IGGPMLAHVASHEGIVAAENIAGKEPAPIDYDAVPSCIYTDPEVASVGLTEEQAKEAGYDVKIGKFPFAANGKALALGET 388 (461)
T ss_pred CCCcccHHHHHHHHHHHHHHHcCCCCCCCCCCCCCeEEecCCceEEEeCCHHHHHhCCCCeEEEEEeCccchHHHhcCCC
Confidence 99889999999999999999998654345677899999999999999999999999987888888877776677666778
Q ss_pred cEEEEEEEECCCCeEEEEEEECCChhHHHHHHHHHHHCCCCHHHHccCcccCCCchHHHHHHHh
Q 008860 463 RIFMKLVLCAKTNKVLGLHMCGEDAPEIVQGFAVAVKAGLTKADFDATVGVHPTAAEEFVTLRT 526 (551)
Q Consensus 463 ~~~~kl~~~~~~~~ilG~~~~g~~~~e~i~~~~~~i~~~~~~~~l~~~~~~~pt~~e~~~~~~~ 526 (551)
++|+|+++|+++++|||+|++|+++.|+|+.+++||++|+|++||.+++++|||++|.+.++..
T Consensus 389 ~g~~kl~~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~P~~~e~~~~~~~ 452 (461)
T TIGR01350 389 DGFVKIIADKKTGEILGAHIIGPHATELISEAVLAMELELTVEELAKTIHPHPTLSEAIKEAAL 452 (461)
T ss_pred ceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcCcccCCCHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999775443
|
The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide. |
| >KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-69 Score=500.42 Aligned_cols=454 Identities=41% Similarity=0.737 Sum_probs=405.4
Q ss_pred CCCccEEEECCChHHHHHHHHHHhCCCcEEEEc--cCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhhccCC
Q 008860 70 HYDFDLFTIGAGSGGVRASRFAANFGASVAICE--LPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDESNGF 147 (551)
Q Consensus 70 ~~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE--~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~ 147 (551)
..+||++|||||.+||+||.+++..|.+|.++| +|. +...++.+||+|.|.||+|+|+|..++-+-+.+.+...|
T Consensus 17 sydyDLIviGgGSgGLacaKeAa~~G~kV~~lDfV~Pt---P~GtsWGlGGTCvNVGCIPKKLMHQAallG~al~da~ky 93 (503)
T KOG4716|consen 17 SYDYDLIVIGGGSGGLACAKEAADLGAKVACLDFVKPT---PQGTSWGLGGTCVNVGCIPKKLMHQAALLGEALHDARKY 93 (503)
T ss_pred cCCccEEEEcCCcchhhHHHHHHhcCCcEEEEeecccC---CCCCccccCceeeecccccHHHHHHHHHHHHHHHHHHhh
Confidence 457999999999999999999999999999999 432 345578899999999999999999999999999999999
Q ss_pred CcccCC-CCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEeEEEEecCCEEEE---c--CEEEEeCeEEEcCCCCC
Q 008860 148 GWKYGT-EPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIEGRGKIVDPHTVDV---D--GKLYSARHILISVGGRP 221 (551)
Q Consensus 148 g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~i~~~~v~v---~--g~~~~~d~lviAtG~~p 221 (551)
||.... ....||..+.+..+..+..+.-.++-.+.+..|++++..+.|++++++.. . .+.++++.++||||.+|
T Consensus 94 GW~~~e~~ikhdW~~l~~sVqnhI~s~NW~yRv~LreKkV~Y~NsygeFv~~h~I~at~~~gk~~~~ta~~fvIatG~RP 173 (503)
T KOG4716|consen 94 GWNVDEQKIKHDWNKLVKSVQNHIKSLNWGYRVQLREKKVEYINSYGEFVDPHKIKATNKKGKERFLTAENFVIATGLRP 173 (503)
T ss_pred CCCCccccccccHHHHHHHHHHHhhhccceEEEEeccceeeeeecceeecccceEEEecCCCceEEeecceEEEEecCCC
Confidence 999875 58899999998888888776555555667778999999999999999887 2 35789999999999999
Q ss_pred CCCCCCC-CCceecchhhhcCCCCCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCCCCCHHHHHHHHHHHHhcC
Q 008860 222 FIPDIPG-SEYAIDSDAALDLPSKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRDFVAEQMSLRG 300 (551)
Q Consensus 222 ~~p~i~g-~~~~~~~~~~~~~~~~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~G 300 (551)
++|+||| .++.+++||++.+...|.+-+|+|+|++++|+|.+|+.+|.+||+..|+- ++++||.++++.+.+.|++.|
T Consensus 174 rYp~IpG~~Ey~ITSDDlFsl~~~PGkTLvVGa~YVaLECAgFL~gfg~~vtVmVRSI-~LrGFDqdmae~v~~~m~~~G 252 (503)
T KOG4716|consen 174 RYPDIPGAKEYGITSDDLFSLPYEPGKTLVVGAGYVALECAGFLKGFGYDVTVMVRSI-LLRGFDQDMAELVAEHMEERG 252 (503)
T ss_pred CCCCCCCceeeeecccccccccCCCCceEEEccceeeeehhhhHhhcCCCcEEEEEEe-ecccccHHHHHHHHHHHHHhC
Confidence 9999999 57899999999999999999999999999999999999999999999964 578899999999999999999
Q ss_pred cEEEcCcccEEEEEcCCceEEEEEC---CCe--EEEeeEEEEecCcCCCCCCCCccccCeeec-CCCCeEeCCCCCCCCC
Q 008860 301 IEFHTEESPQAILKSTDGSLSVKTN---KGT--VDGFSHVMFATGRRPNTKNLGLEKVGVKMT-KNGAIEVDEYSGTAVP 374 (551)
Q Consensus 301 v~i~~~~~v~~i~~~~~~~~~V~~~---~G~--~i~~d~vi~a~G~~p~~~~l~l~~~gl~~~-~~G~i~vd~~~~t~~~ 374 (551)
|+|...+.+.+++..+++.+.|... .++ +-++|.|+||+|+.+.++.++++++|++++ .+|.|.||+.-+|++|
T Consensus 253 ikf~~~~vp~~Veq~~~g~l~v~~k~t~t~~~~~~~ydTVl~AiGR~~~~~~l~L~~~GVk~n~ks~KI~v~~~e~t~vp 332 (503)
T KOG4716|consen 253 IKFLRKTVPERVEQIDDGKLRVFYKNTNTGEEGEEEYDTVLWAIGRKALTDDLNLDNAGVKTNEKSGKIPVDDEEATNVP 332 (503)
T ss_pred CceeecccceeeeeccCCcEEEEeecccccccccchhhhhhhhhccccchhhcCCCccceeecccCCccccChHHhcCCC
Confidence 9999998889998877765555542 222 357999999999999999999999999996 4588999999999999
Q ss_pred cEEEeCcCCCC-CCChHHHHHhHHHHHHHHcCCCCCCCCCCCccEEEecCCceEEeeCCHHHHHhcCC--CeEEEEeecc
Q 008860 375 SIWAVGDVTDR-INLTPVALMEGGALAKTLFQAEPTKPDYSAVPSAVFSQPPIGQVGLSEEQAIQEYG--DIDVFTANFR 451 (551)
Q Consensus 375 ~vya~GD~~~~-~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~~~~~~~~~~~~~vGl~~~~a~~~~~--~~~~~~~~~~ 451 (551)
+|||+||+... +.+++.|++.||.+|+.++++.....+|..+|+.+|+..|++.+||+|++|.+.++ ++++++..|.
T Consensus 333 ~vyAvGDIl~~kpELTPvAIqsGrlLa~Rlf~gs~q~~dy~~V~TTVFTPLEy~c~GlsEE~Ai~k~g~dnievfH~~f~ 412 (503)
T KOG4716|consen 333 YVYAVGDILEDKPELTPVAIQSGRLLARRLFAGSTQLMDYDDVATTVFTPLEYGCVGLSEEDAIEKYGEDNIEVFHSYFK 412 (503)
T ss_pred ceEEecceecCCcccchhhhhhchHHHHHHhcCcceeeeccCCceeeecchhccccCCCHHHHHHHhCcccEEEeecccc
Confidence 99999999985 78999999999999999999888889999999999999999999999999998864 8999999899
Q ss_pred CcccccccC-CCcEEEEEEEE-CCCCeEEEEEEECCChhHHHHHHHHHHHCCCCHHHHccCcccCCCchHHHHHHHhh
Q 008860 452 PLKATLSGL-PDRIFMKLVLC-AKTNKVLGLHMCGEDAPEIVQGFAVAVKAGLTKADFDATVGVHPTAAEEFVTLRTP 527 (551)
Q Consensus 452 ~~~~~~~~~-~~~~~~kl~~~-~~~~~ilG~~~~g~~~~e~i~~~~~~i~~~~~~~~l~~~~~~~pt~~e~~~~~~~~ 527 (551)
+..|.+... ....|+|.+.+ .++.+|+|.|++||+|.|+++.++.|++.|+|..||.+++.+|||.+|.+..+.-.
T Consensus 413 P~E~~ipqrd~~~CY~K~vc~r~~~qkv~G~H~lgPnAgEV~QGfaaAlk~glt~~~l~ntigIHPt~aE~Ft~L~it 490 (503)
T KOG4716|consen 413 PLEYTIPQRDVRHCYLKAVCERDEDQKVLGLHILGPNAGEVIQGFAAALKCGLTKKDLDNTIGIHPTTAEEFTTLSIT 490 (503)
T ss_pred ceEEEcccccCCceEEEEeecccCCceEEEEEEecCchhHHHHHHHHHHHhcccHHHHhhcccccccchhheeEEEEE
Confidence 888876544 34569999998 56789999999999999999999999999999999999999999999998765433
|
|
| >PRK13512 coenzyme A disulfide reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-56 Score=464.49 Aligned_cols=402 Identities=18% Similarity=0.259 Sum_probs=309.5
Q ss_pred ccEEEECCChHHHHHHHHHHhC--CCcEEEEccCCCCCCCCCCCCCCCeeccCCC-cchHHHHHhhhhhhHhhhccCCCc
Q 008860 73 FDLFTIGAGSGGVRASRFAANF--GASVAICELPFSTISSETTGGVGGTCVLRGC-VPKKLLVYASKFSHEFDESNGFGW 149 (551)
Q Consensus 73 ~dVvIIGgG~aGl~aA~~l~~~--G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~-~p~~~l~~~~~~~~~~~~~~~~g~ 149 (551)
.+|||||||+||++||..|++. +.+|+|||+ ...++ +..| +|...
T Consensus 2 ~~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~---------~~~~~----~~~~~lp~~~------------------- 49 (438)
T PRK13512 2 PKIIVVGAVAGGATCASQIRRLDKESDIIIFEK---------DRDMS----FANCALPYYI------------------- 49 (438)
T ss_pred CeEEEECCcHHHHHHHHHHHhhCCCCCEEEEEC---------CCCcc----cccCCcchhh-------------------
Confidence 4799999999999999999885 689999993 11110 1111 12100
Q ss_pred ccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEE-eEEEEecC--CEEEE-c---CE--EEEeCeEEEcCCCC
Q 008860 150 KYGTEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIE-GRGKIVDP--HTVDV-D---GK--LYSARHILISVGGR 220 (551)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~i~~--~~v~v-~---g~--~~~~d~lviAtG~~ 220 (551)
.+ .......+... ....+..+.+++++. .++..+|+ +.+.+ + ++ ++.||+||||||++
T Consensus 50 --~~-~~~~~~~~~~~----------~~~~~~~~~~i~v~~~~~V~~Id~~~~~v~~~~~~~~~~~~~~yd~lviAtGs~ 116 (438)
T PRK13512 50 --GE-VVEDRKYALAY----------TPEKFYDRKQITVKTYHEVIAINDERQTVTVLNRKTNEQFEESYDKLILSPGAS 116 (438)
T ss_pred --cC-ccCCHHHcccC----------CHHHHHHhCCCEEEeCCEEEEEECCCCEEEEEECCCCcEEeeecCEEEECCCCC
Confidence 00 00000100000 011233456899875 56777765 45555 2 12 46899999999999
Q ss_pred CCCCCCCCCCceecc---hhhhcC-----CCCCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCCCCCHHHHHHH
Q 008860 221 PFIPDIPGSEYAIDS---DAALDL-----PSKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRDFV 292 (551)
Q Consensus 221 p~~p~i~g~~~~~~~---~~~~~~-----~~~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l 292 (551)
|+.|++++ +.+++. ++...+ ...+++++|||+|++|+|+|..|+++|.+|+++++.+.+++.+++++.+.+
T Consensus 117 ~~~~~~~~-~~~~~~~~~~~~~~l~~~l~~~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l~~~~d~~~~~~l 195 (438)
T PRK13512 117 ANSLGFES-DITFTLRNLEDTDAIDQFIKANQVDKALVVGAGYISLEVLENLYERGLHPTLIHRSDKINKLMDADMNQPI 195 (438)
T ss_pred CCCCCCCC-CCeEEecCHHHHHHHHHHHhhcCCCEEEEECCCHHHHHHHHHHHhCCCcEEEEecccccchhcCHHHHHHH
Confidence 99888664 223322 222111 234789999999999999999999999999999999998888999999999
Q ss_pred HHHHHhcCcEEEcCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCcCCCCCCCCccccCeeecCCCCeEeCCCCCCC
Q 008860 293 AEQMSLRGIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNTKNLGLEKVGVKMTKNGAIEVDEYSGTA 372 (551)
Q Consensus 293 ~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~t~ 372 (551)
.+.|++.||+++++++|++++. . .+.+.+|+.+++|.|++|+|++||+++ +++.+++++++|+|.||+++||+
T Consensus 196 ~~~l~~~gI~i~~~~~v~~i~~--~---~v~~~~g~~~~~D~vl~a~G~~pn~~~--l~~~gl~~~~~G~i~Vd~~~~t~ 268 (438)
T PRK13512 196 LDELDKREIPYRLNEEIDAING--N---EVTFKSGKVEHYDMIIEGVGTHPNSKF--IESSNIKLDDKGFIPVNDKFETN 268 (438)
T ss_pred HHHHHhcCCEEEECCeEEEEeC--C---EEEECCCCEEEeCEEEECcCCCcChHH--HHhcCcccCCCCcEEECCCcccC
Confidence 9999999999999999999963 2 366778888999999999999999987 67889998888999999999999
Q ss_pred CCcEEEeCcCCCC----------CCChHHHHHhHHHHHHHHcCCCC-CCCCCCCccEEEecCCceEEeeCCHHHHHhcCC
Q 008860 373 VPSIWAVGDVTDR----------INLTPVALMEGGALAKTLFQAEP-TKPDYSAVPSAVFSQPPIGQVGLSEEQAIQEYG 441 (551)
Q Consensus 373 ~~~vya~GD~~~~----------~~~~~~A~~~g~~aa~~i~g~~~-~~~~~~~~~~~~~~~~~~~~vGl~~~~a~~~~~ 441 (551)
+|||||+|||++. +++++.|.+||+++++||+|.+. .+.++..+|.+.|++|+++++|+||+||++.
T Consensus 269 ~~~IyA~GD~~~~~~~~~~~~~~~~la~~A~~~a~~~a~ni~g~~~~~~~~~~~~~~~~~~~~~ia~vGlte~~a~~~-- 346 (438)
T PRK13512 269 VPNIYAIGDIITSHYRHVDLPASVPLAWGAHRAASIVAEQIAGNDTIEFKGFLGNNIVKFFDYTFASVGVKPNELKQF-- 346 (438)
T ss_pred CCCEEEeeeeEEeeeccCCCceecccchHHHHHHHHHHHHhcCCCccccCCcccceEEEEcCceEEeecCCHHHHccC--
Confidence 9999999999862 46788899999999999998543 2335678899999999999999999999875
Q ss_pred CeEEEEeeccCcccccccCCCcEEEEEEEECCCCeEEEEEEECCC-hhHHHHHHHHHHHCCCCHHHHccC-cccCCCchH
Q 008860 442 DIDVFTANFRPLKATLSGLPDRIFMKLVLCAKTNKVLGLHMCGED-APEIVQGFAVAVKAGLTKADFDAT-VGVHPTAAE 519 (551)
Q Consensus 442 ~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~~~~~~ilG~~~~g~~-~~e~i~~~~~~i~~~~~~~~l~~~-~~~~pt~~e 519 (551)
++.+....+......+ .+.+.||+||++|+++++|||+|++|++ +.|+|+.++++|++|+|++||.++ +++||+++.
T Consensus 347 ~~~~~~~~~~~~~~~~-~~~~~g~~klv~d~~~~~ilGa~~~g~~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~~P~~~~ 425 (438)
T PRK13512 347 DYKMVEVTQGAHANYY-PGNSPLHLRVYYDTSNRKILRAAAVGKEGADKRIDVLSMAMMNQLTVDELTEFEVAYAPPYSH 425 (438)
T ss_pred CcEEEEEecCCcCCCc-CCCceEEEEEEEECCCCeEEEEEEEccccHHHHHHHHHHHHHcCCcHHHHhhcccccCCCCCc
Confidence 3555554443333322 5677899999999999999999999996 899999999999999999999996 999999997
Q ss_pred HHHHHHhhhhh
Q 008860 520 EFVTLRTPTRK 530 (551)
Q Consensus 520 ~~~~~~~~~~~ 530 (551)
.+..+..++.+
T Consensus 426 ~~~~~~~~~~~ 436 (438)
T PRK13512 426 PKDLINMIGYK 436 (438)
T ss_pred cccHHHHHHHh
Confidence 66555555443
|
|
| >PRK09564 coenzyme A disulfide reductase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-54 Score=454.09 Aligned_cols=406 Identities=26% Similarity=0.368 Sum_probs=313.5
Q ss_pred cEEEECCChHHHHHHHHHHhCC--CcEEEEccCCCCCCCCCCCCCCCeeccCCC-cchHHHHHhhhhhhHhhhccCCCcc
Q 008860 74 DLFTIGAGSGGVRASRFAANFG--ASVAICELPFSTISSETTGGVGGTCVLRGC-VPKKLLVYASKFSHEFDESNGFGWK 150 (551)
Q Consensus 74 dVvIIGgG~aGl~aA~~l~~~G--~~V~liE~~~~~~~~~~~~~~GG~~~~~g~-~p~~~l~~~~~~~~~~~~~~~~g~~ 150 (551)
+|||||||+||+++|..|++.+ .+|+|||+ ...++ +..| +| +.
T Consensus 2 ~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~---------~~~~~----~~~~~~~---------------------~~ 47 (444)
T PRK09564 2 KIIIIGGTAAGMSAAAKAKRLNKELEITVYEK---------TDIVS----FGACGLP---------------------YF 47 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHHCCCCcEEEEEC---------CCcce----eecCCCc---------------------eE
Confidence 6999999999999999999864 59999993 11110 0000 11 00
Q ss_pred cCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEe-EEEEec--CCEEEE-c---CEEEE--eCeEEEcCCCCC
Q 008860 151 YGTEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIEG-RGKIVD--PHTVDV-D---GKLYS--ARHILISVGGRP 221 (551)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~i~--~~~v~v-~---g~~~~--~d~lviAtG~~p 221 (551)
..+. ......+ .....+.+.+.+++++.+ .+..++ .+.+.+ + +..+. ||+||+|||++|
T Consensus 48 ~~~~-~~~~~~~-----------~~~~~~~~~~~gv~~~~~~~V~~id~~~~~v~~~~~~~~~~~~~~yd~lviAtG~~~ 115 (444)
T PRK09564 48 VGGF-FDDPNTM-----------IARTPEEFIKSGIDVKTEHEVVKVDAKNKTITVKNLKTGSIFNDTYDKLMIATGARP 115 (444)
T ss_pred eccc-cCCHHHh-----------hcCCHHHHHHCCCeEEecCEEEEEECCCCEEEEEECCCCCEEEecCCEEEECCCCCC
Confidence 0000 0000000 011123345668998754 566665 355665 2 45666 999999999999
Q ss_pred CCCCCCCCC--ceecc---hhhhcCC-----CCCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCCC-CCHHHHH
Q 008860 222 FIPDIPGSE--YAIDS---DAALDLP-----SKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRG-FDEDIRD 290 (551)
Q Consensus 222 ~~p~i~g~~--~~~~~---~~~~~~~-----~~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~~-~~~~~~~ 290 (551)
..|++||.+ .+++. ++...+. ..+++++|||+|++|+|+|..+++.|.+|+++++.+.+++. +++++.+
T Consensus 116 ~~~~i~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~ 195 (444)
T PRK09564 116 IIPPIKNINLENVYTLKSMEDGLALKELLKDEEIKNIVIIGAGFIGLEAVEAAKHLGKNVRIIQLEDRILPDSFDKEITD 195 (444)
T ss_pred CCCCCCCcCCCCEEEECCHHHHHHHHHHHhhcCCCEEEEECCCHHHHHHHHHHHhcCCcEEEEeCCcccCchhcCHHHHH
Confidence 999999864 34433 2233221 24789999999999999999999999999999999988874 8999999
Q ss_pred HHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCcCCCCCCCCccccCeeecCCCCeEeCCCCC
Q 008860 291 FVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNTKNLGLEKVGVKMTKNGAIEVDEYSG 370 (551)
Q Consensus 291 ~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~ 370 (551)
.+.+.+++.||+++++++|++++.++ ....+.++++ ++++|.+++|+|+.|++++ ++++|++++++|+|.||+++|
T Consensus 196 ~l~~~l~~~gI~v~~~~~v~~i~~~~-~~~~v~~~~~-~i~~d~vi~a~G~~p~~~~--l~~~gl~~~~~g~i~vd~~~~ 271 (444)
T PRK09564 196 VMEEELRENGVELHLNEFVKSLIGED-KVEGVVTDKG-EYEADVVIVATGVKPNTEF--LEDTGLKTLKNGAIIVDEYGE 271 (444)
T ss_pred HHHHHHHHCCCEEEcCCEEEEEecCC-cEEEEEeCCC-EEEcCEEEECcCCCcCHHH--HHhcCccccCCCCEEECCCcc
Confidence 99999999999999999999997543 3244555544 6999999999999999887 788899888889999999999
Q ss_pred CCCCcEEEeCcCCCC----------CCChHHHHHhHHHHHHHHcCCCCCCCCCCCccEEEecCCceEEeeCCHHHHHhcC
Q 008860 371 TAVPSIWAVGDVTDR----------INLTPVALMEGGALAKTLFQAEPTKPDYSAVPSAVFSQPPIGQVGLSEEQAIQEY 440 (551)
Q Consensus 371 t~~~~vya~GD~~~~----------~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~~~~~~~~~~~~~vGl~~~~a~~~~ 440 (551)
|+.|||||+|||++. +++++.|.+||+++|+||+|.+.........+...|++|+++++|++|+||++.+
T Consensus 272 t~~~~IyA~GD~~~~~~~~~~~~~~~~~~~~A~~qg~~~a~ni~g~~~~~~~~~~~~~~~~~~~~~a~vG~t~~~a~~~g 351 (444)
T PRK09564 272 TSIENIYAAGDCATIYNIVSNKNVYVPLATTANKLGRMVGENLAGRHVSFKGTLGSACIKVLDLEAARTGLTEEEAKKLG 351 (444)
T ss_pred cCCCCEEEeeeEEEEEeccCCCeeeccchHHHHHHHHHHHHHhcCCCCCCCCcccceEEEECCEEEEEecCCHHHHHHCC
Confidence 999999999999973 4688899999999999999865443333333345699999999999999999887
Q ss_pred CCeEEEEeeccCcccccccCCCcEEEEEEEECCCCeEEEEEEECCC-hhHHHHHHHHHHHCCCCHHHHccCcccC-CCch
Q 008860 441 GDIDVFTANFRPLKATLSGLPDRIFMKLVLCAKTNKVLGLHMCGED-APEIVQGFAVAVKAGLTKADFDATVGVH-PTAA 518 (551)
Q Consensus 441 ~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~~~~~~ilG~~~~g~~-~~e~i~~~~~~i~~~~~~~~l~~~~~~~-pt~~ 518 (551)
.++.+...... ..+.+..+.+.+|+||++|++|++|||+|++|+. +.|+|+.++++|++++|++||.++.++| |+++
T Consensus 352 ~~~~~~~~~~~-~~~~~~~~~~~~~~klv~~~~~~~ilG~~~~g~~~~~~~i~~~~~~i~~~~~~~~~~~~~~~~~p~~~ 430 (444)
T PRK09564 352 IDYKTVFIKDK-NHTNYYPGQEDLYVKLIYEADTKVILGGQIIGKKGAVLRIDALAVAIYAKLTTQELGMMDFCYAPPFA 430 (444)
T ss_pred CCeEEEEEecC-CCCCcCCCCceEEEEEEEECCCCeEEeEEEEcCccHHHHHHHHHHHHHCCCCHHHHhhcccccCCCCC
Confidence 67766665432 3344456677899999999999999999999995 8899999999999999999999998877 9999
Q ss_pred HHHHHHHhhhhh
Q 008860 519 EEFVTLRTPTRK 530 (551)
Q Consensus 519 e~~~~~~~~~~~ 530 (551)
|.+..+..++.+
T Consensus 431 ~~~~~~~~~~~~ 442 (444)
T PRK09564 431 RTWDALNVAGNV 442 (444)
T ss_pred CCcCHHHHHHHh
Confidence 988776666554
|
|
| >TIGR03385 CoA_CoA_reduc CoA-disulfide reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-47 Score=401.76 Aligned_cols=337 Identities=24% Similarity=0.346 Sum_probs=278.1
Q ss_pred HHHhCCeEEEE-eEEEEec--CCEEEE-c---CEEEE--eCeEEEcCCCCCCCCCCCCCC--ceecchhhhc-------C
Q 008860 180 ILINAGITLIE-GRGKIVD--PHTVDV-D---GKLYS--ARHILISVGGRPFIPDIPGSE--YAIDSDAALD-------L 241 (551)
Q Consensus 180 ~~~~~~v~~~~-~~~~~i~--~~~v~v-~---g~~~~--~d~lviAtG~~p~~p~i~g~~--~~~~~~~~~~-------~ 241 (551)
++.+.+++++. ..+..++ .+.+.+ + ++.+. ||+||||||++|..|++||.+ .+++..++.. +
T Consensus 53 ~~~~~gv~~~~~~~V~~id~~~~~v~~~~~~~~~~~~~~yd~lIiATG~~p~~~~i~G~~~~~v~~~~~~~~~~~~~~~l 132 (427)
T TIGR03385 53 FIKKRGIDVKTNHEVIEVNDERQTVVVRNNKTNETYEESYDYLILSPGASPIVPNIEGINLDIVFTLRNLEDTDAIKQYI 132 (427)
T ss_pred HHHhcCCeEEecCEEEEEECCCCEEEEEECCCCCEEecCCCEEEECCCCCCCCCCCCCcCCCCEEEECCHHHHHHHHHHH
Confidence 34667899864 4666665 455555 1 34677 999999999999999999964 3444333221 1
Q ss_pred -CCCCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccC-CCCCHHHHHHHHHHHHhcCcEEEcCcccEEEEEcCCce
Q 008860 242 -PSKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVL-RGFDEDIRDFVAEQMSLRGIEFHTEESPQAILKSTDGS 319 (551)
Q Consensus 242 -~~~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l-~~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~ 319 (551)
...+++++|||+|++|+|+|..|++.|.+|+++++.+.++ +.+++++.+.+.+.|++.||++++++.|+++..++ .
T Consensus 133 ~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~-~- 210 (427)
T TIGR03385 133 DKNKVENVVIIGGGYIGIEMAEALRERGKNVTLIHRSERILNKLFDEEMNQIVEEELKKHEINLRLNEEVDSIEGEE-R- 210 (427)
T ss_pred hhcCCCeEEEECCCHHHHHHHHHHHhCCCcEEEEECCcccCccccCHHHHHHHHHHHHHcCCEEEeCCEEEEEecCC-C-
Confidence 1346899999999999999999999999999999998874 55889999999999999999999999999997643 2
Q ss_pred EEEEECCCeEEEeeEEEEecCcCCCCCCCCccccCeeecCCCCeEeCCCCCCCCCcEEEeCcCCCC----------CCCh
Q 008860 320 LSVKTNKGTVDGFSHVMFATGRRPNTKNLGLEKVGVKMTKNGAIEVDEYSGTAVPSIWAVGDVTDR----------INLT 389 (551)
Q Consensus 320 ~~V~~~~G~~i~~d~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~t~~~~vya~GD~~~~----------~~~~ 389 (551)
+ +.+.+|+++++|.||+|+|++|++++ +++++++++++|+|.||+++||+.|+|||+|||+.. ++++
T Consensus 211 ~-v~~~~g~~i~~D~vi~a~G~~p~~~~--l~~~gl~~~~~G~i~vd~~~~t~~~~Vya~GD~~~~~~~~~~~~~~~~~~ 287 (427)
T TIGR03385 211 V-KVFTSGGVYQADMVILATGIKPNSEL--AKDSGLKLGETGAIWVNEKFQTSVPNIYAAGDVAESHNIITKKPAWVPLA 287 (427)
T ss_pred E-EEEcCCCEEEeCEEEECCCccCCHHH--HHhcCcccCCCCCEEECCCcEeCCCCEEEeeeeEEeeeccCCCceeeech
Confidence 3 56678888999999999999999987 678899998889999999999999999999999963 3678
Q ss_pred HHHHHhHHHHHHHHcCCCCCCCCCCCccEEEecCCceEEeeCCHHHHHhcCCCeEEEEeeccCcccccccCCCcEEEEEE
Q 008860 390 PVALMEGGALAKTLFQAEPTKPDYSAVPSAVFSQPPIGQVGLSEEQAIQEYGDIDVFTANFRPLKATLSGLPDRIFMKLV 469 (551)
Q Consensus 390 ~~A~~~g~~aa~~i~g~~~~~~~~~~~~~~~~~~~~~~~vGl~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~ 469 (551)
+.|.+||+++|+||.|....+..+..+|.++|++|+++++|+++++|++.+.++.+....+....+.. .+.+.+|+||+
T Consensus 288 ~~A~~~g~~~a~ni~g~~~~~~~~~~~~~~~~~~~~~a~vG~t~~~a~~~g~~~~~~~~~~~~~~~~~-~~~~~g~~kli 366 (427)
T TIGR03385 288 WGANKMGRIAGENIAGNDIEFKGVLGTNITKFFDLTIASTGVTENEAKKLNIDYKTVFVKAKTHANYY-PGNSPLHLKLI 366 (427)
T ss_pred HHHHHHHHHHHHHhcCCCCCCCCcceeeEEEEcCeEEEEecCCHHHHHHCCCCeEEEEEecCCCCCcC-CCCceEEEEEE
Confidence 89999999999999986543334446788999999999999999999988767776665544333332 46678999999
Q ss_pred EECCCCeEEEEEEECCC-hhHHHHHHHHHHHCCCCHHHHccCc-ccCCCchHHHH
Q 008860 470 LCAKTNKVLGLHMCGED-APEIVQGFAVAVKAGLTKADFDATV-GVHPTAAEEFV 522 (551)
Q Consensus 470 ~~~~~~~ilG~~~~g~~-~~e~i~~~~~~i~~~~~~~~l~~~~-~~~pt~~e~~~ 522 (551)
+|+++++|||+|++|++ +.|+|+.++++|++++|++||.+++ ..||.++..+.
T Consensus 367 ~~~~~~~ilG~~~~g~~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~~p~~~~~~~ 421 (427)
T TIGR03385 367 YEKDTRRILGAQAVGKEGADKRIDVLAAAIMAGLTVKDLFFFELAYAPPYSRVWD 421 (427)
T ss_pred EECCCCeEEEEEEEccccHHHHHHHHHHHHHCCCCHHHHhhcccccCCCCCCccc
Confidence 99999999999999998 9999999999999999999999886 47788876443
|
Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol. |
| >PRK14989 nitrite reductase subunit NirD; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-44 Score=400.20 Aligned_cols=386 Identities=17% Similarity=0.297 Sum_probs=290.0
Q ss_pred ccEEEECCChHHHHHHHHHHhC----CCcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhhccCCC
Q 008860 73 FDLFTIGAGSGGVRASRFAANF----GASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDESNGFG 148 (551)
Q Consensus 73 ~dVvIIGgG~aGl~aA~~l~~~----G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g 148 (551)
.+|||||+|+||+.+|..|++. +++|+||++ ...++ +..|..+..
T Consensus 4 ~kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~---------e~~~~----Y~r~~L~~~------------------ 52 (847)
T PRK14989 4 VRLAIIGNGMVGHRFIEDLLDKADAANFDITVFCE---------EPRIA----YDRVHLSSY------------------ 52 (847)
T ss_pred CcEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEEC---------CCCCc----ccCCcchHh------------------
Confidence 4899999999999999999763 579999982 11100 000100000
Q ss_pred cccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEeE-EEEecCC--EEEE-cCEEEEeCeEEEcCCCCCCCC
Q 008860 149 WKYGTEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIEGR-GKIVDPH--TVDV-DGKLYSARHILISVGGRPFIP 224 (551)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~i~~~--~v~v-~g~~~~~d~lviAtG~~p~~p 224 (551)
+.. ..+.. +......++++.+|+++.++ +..++.. .+.+ +++.+.||+||||||++|+.|
T Consensus 53 --~~~---~~~~~-----------l~~~~~~~~~~~gI~~~~g~~V~~Id~~~~~V~~~~G~~i~yD~LVIATGs~p~~p 116 (847)
T PRK14989 53 --FSH---HTAEE-----------LSLVREGFYEKHGIKVLVGERAITINRQEKVIHSSAGRTVFYDKLIMATGSYPWIP 116 (847)
T ss_pred --HcC---CCHHH-----------ccCCCHHHHHhCCCEEEcCCEEEEEeCCCcEEEECCCcEEECCEEEECCCCCcCCC
Confidence 000 01111 11112245566799999885 6667654 3444 677899999999999999999
Q ss_pred CCCCCCc--ee---cchhhhcC---CCCCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCCC-CCHHHHHHHHHH
Q 008860 225 DIPGSEY--AI---DSDAALDL---PSKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRG-FDEDIRDFVAEQ 295 (551)
Q Consensus 225 ~i~g~~~--~~---~~~~~~~~---~~~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~~-~~~~~~~~l~~~ 295 (551)
++||.+. ++ +.+++..+ ...+++++|||+|++|+|+|..|+++|.+|+++++.+.+++. ++++..+.+.+.
T Consensus 117 ~ipG~~~~~v~~~rt~~d~~~l~~~~~~~k~vvVIGgG~iGlE~A~~L~~~G~~VtvVe~~~~ll~~~ld~~~~~~l~~~ 196 (847)
T PRK14989 117 PIKGSETQDCFVYRTIEDLNAIEACARRSKRGAVVGGGLLGLEAAGALKNLGVETHVIEFAPMLMAEQLDQMGGEQLRRK 196 (847)
T ss_pred CCCCCCCCCeEEECCHHHHHHHHHHHhcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEeccccchhhhcCHHHHHHHHHH
Confidence 9999753 33 44555433 235789999999999999999999999999999999998875 899999999999
Q ss_pred HHhcCcEEEcCcccEEEEEcC-CceEEEEECCCeEEEeeEEEEecCcCCCCCCCCccccCeeecCCCCeEeCCCCCCCCC
Q 008860 296 MSLRGIEFHTEESPQAILKST-DGSLSVKTNKGTVDGFSHVMFATGRRPNTKNLGLEKVGVKMTKNGAIEVDEYSGTAVP 374 (551)
Q Consensus 296 l~~~Gv~i~~~~~v~~i~~~~-~~~~~V~~~~G~~i~~d~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~t~~~ 374 (551)
|+++||++++++.+++|..++ +....+.+.+|+++++|.||+|+|.+|++++ ++.+|++++++|+|.||+++||+.|
T Consensus 197 L~~~GV~v~~~~~v~~I~~~~~~~~~~v~~~dG~~i~~D~Vv~A~G~rPn~~L--~~~~Gl~~~~~G~I~VD~~l~Ts~p 274 (847)
T PRK14989 197 IESMGVRVHTSKNTLEIVQEGVEARKTMRFADGSELEVDFIVFSTGIRPQDKL--ATQCGLAVAPRGGIVINDSCQTSDP 274 (847)
T ss_pred HHHCCCEEEcCCeEEEEEecCCCceEEEEECCCCEEEcCEEEECCCcccCchH--HhhcCccCCCCCcEEECCCCcCCCC
Confidence 999999999999999997643 2335688899999999999999999999986 7788999999999999999999999
Q ss_pred cEEEeCcCCCC----CCChHHHHHhHHHHHHHHcCCCCCCCCCCCcc-EEEecCCceEEeeCCHHHHHhcCCCeEEEEee
Q 008860 375 SIWAVGDVTDR----INLTPVALMEGGALAKTLFQAEPTKPDYSAVP-SAVFSQPPIGQVGLSEEQAIQEYGDIDVFTAN 449 (551)
Q Consensus 375 ~vya~GD~~~~----~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~~-~~~~~~~~~~~vGl~~~~a~~~~~~~~~~~~~ 449 (551)
||||+|||+.. ..+++.|..||+++|+||+|....+ +....+ ...+.+.+++++|... .........
T Consensus 275 ~IYAiGD~a~~~~~~~gl~~~a~~~a~vaa~~i~g~~~~~-~g~~~~~~lk~~G~~v~s~G~~~----~~~~~~~~~--- 346 (847)
T PRK14989 275 DIYAIGECASWNNRVFGLVAPGYKMAQVAVDHLLGSENAF-EGADLSAKLKLLGVDVGGIGDAH----GRTPGARSY--- 346 (847)
T ss_pred CEEEeecceeEcCcccccHHHHHHHHHHHHHHhcCCCcCC-CCcccceEEEECCcceEeccccc----CCCCCceeE---
Confidence 99999999975 3478899999999999999876432 333344 3445567888888311 110000010
Q ss_pred ccCcccccccCCCcEEEEEEEECCCCeEEEEEEECCC--hhHHHHHHHHHHHCCCCHHHHccCccc---CCCc-hHHH
Q 008860 450 FRPLKATLSGLPDRIFMKLVLCAKTNKVLGLHMCGED--APEIVQGFAVAVKAGLTKADFDATVGV---HPTA-AEEF 521 (551)
Q Consensus 450 ~~~~~~~~~~~~~~~~~kl~~~~~~~~ilG~~~~g~~--~~e~i~~~~~~i~~~~~~~~l~~~~~~---~pt~-~e~~ 521 (551)
.+.+....+|.||++++++++|+|++++|+. ..++++.+...+..+.+.++|....++ ||+. +|++
T Consensus 347 ------~~~~~~~~~y~Klv~~~~~~~LlGa~lvGd~~~~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~l 418 (847)
T PRK14989 347 ------VYLDESKEIYKRLIVSEDNKTLLGAVLVGDTSDYGNLLQLVLNAIELPENPDSLILPAHAGSGKPSIGVDKL 418 (847)
T ss_pred ------EEEcCCCCEEEEEEEECCCCEEEEEEEECCHHHHHHHHHHHHcCCCCccchhheecCCCCCCCCCccccccC
Confidence 1123445789999999999999999999984 478888888777777888888776654 8877 5544
|
|
| >PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-40 Score=340.05 Aligned_cols=349 Identities=17% Similarity=0.266 Sum_probs=255.6
Q ss_pred ccEEEECCChHHHHHHHHHHhC--CCcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhhccCCCcc
Q 008860 73 FDLFTIGAGSGGVRASRFAANF--GASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDESNGFGWK 150 (551)
Q Consensus 73 ~dVvIIGgG~aGl~aA~~l~~~--G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~ 150 (551)
.||||||||+||+++|..|++. ..+|+||++ +.. . .+..+..++.+
T Consensus 3 ~~vvIiG~G~AG~~~a~~lr~~~~~~~Itvi~~----------~~~--~-~y~~~~l~~~~------------------- 50 (377)
T PRK04965 3 NGIVIIGSGFAARQLVKNIRKQDAHIPITLITA----------DSG--D-EYNKPDLSHVF------------------- 50 (377)
T ss_pred CCEEEECCcHHHHHHHHHHHhhCcCCCEEEEeC----------CCC--C-CcCcCcCcHHH-------------------
Confidence 5899999999999999999884 568999982 110 0 00000000000
Q ss_pred cCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEe-EEEEecC--CEEEEcCEEEEeCeEEEcCCCCCCCCCCC
Q 008860 151 YGTEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIEG-RGKIVDP--HTVDVDGKLYSARHILISVGGRPFIPDIP 227 (551)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~i~~--~~v~v~g~~~~~d~lviAtG~~p~~p~i~ 227 (551)
. ......++.. ....+++++.+++++.+ ++..++. +.+.+++..+.||+||+|||++|..|++|
T Consensus 51 -~--~~~~~~~~~~----------~~~~~~~~~~gv~~~~~~~V~~id~~~~~v~~~~~~~~yd~LVlATG~~~~~p~i~ 117 (377)
T PRK04965 51 -S--QGQRADDLTR----------QSAGEFAEQFNLRLFPHTWVTDIDAEAQVVKSQGNQWQYDKLVLATGASAFVPPIP 117 (377)
T ss_pred -h--CCCCHHHhhc----------CCHHHHHHhCCCEEECCCEEEEEECCCCEEEECCeEEeCCEEEECCCCCCCCCCCC
Confidence 0 0001111111 01223456679998865 5666664 45666888999999999999999999999
Q ss_pred CCCceecchhhhcC------CCCCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCCC-CCHHHHHHHHHHHHhcC
Q 008860 228 GSEYAIDSDAALDL------PSKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRG-FDEDIRDFVAEQMSLRG 300 (551)
Q Consensus 228 g~~~~~~~~~~~~~------~~~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~~-~~~~~~~~l~~~l~~~G 300 (551)
|.+.+++...+.+. ...+++++|||+|++|+|+|..|.+.|.+|+++++.+.+++. +++++.+.+.+.+++.|
T Consensus 118 G~~~v~~~~~~~~~~~~~~~~~~~~~vvViGgG~~g~e~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~g 197 (377)
T PRK04965 118 GRELMLTLNSQQEYRAAETQLRDAQRVLVVGGGLIGTELAMDLCRAGKAVTLVDNAASLLASLMPPEVSSRLQHRLTEMG 197 (377)
T ss_pred CCceEEEECCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCcccchhCCHHHHHHHHHHHHhCC
Confidence 98655543332221 134689999999999999999999999999999999988876 68889999999999999
Q ss_pred cEEEcCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCcCCCCCCCCccccCeeecCCCCeEeCCCCCCCCCcEEEeC
Q 008860 301 IEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNTKNLGLEKVGVKMTKNGAIEVDEYSGTAVPSIWAVG 380 (551)
Q Consensus 301 v~i~~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~t~~~~vya~G 380 (551)
|+++++++++++..+++. ..+.+.+|+++++|.||+|+|..|++.+ ++..|++.+. | |.||+++||+.|||||+|
T Consensus 198 V~i~~~~~v~~i~~~~~~-~~v~~~~g~~i~~D~vI~a~G~~p~~~l--~~~~gl~~~~-g-i~vd~~l~ts~~~VyA~G 272 (377)
T PRK04965 198 VHLLLKSQLQGLEKTDSG-IRATLDSGRSIEVDAVIAAAGLRPNTAL--ARRAGLAVNR-G-IVVDSYLQTSAPDIYALG 272 (377)
T ss_pred CEEEECCeEEEEEccCCE-EEEEEcCCcEEECCEEEECcCCCcchHH--HHHCCCCcCC-C-EEECCCcccCCCCEEEee
Confidence 999999999999876554 6788889999999999999999999886 5677887753 4 999999999999999999
Q ss_pred cCCCCC----CChHHHHHhHHHHHHHHcCCCCCCCCCCCccEEEecCCceEEeeCCHHHHHhcCCCeEEEEeeccCcccc
Q 008860 381 DVTDRI----NLTPVALMEGGALAKTLFQAEPTKPDYSAVPSAVFSQPPIGQVGLSEEQAIQEYGDIDVFTANFRPLKAT 456 (551)
Q Consensus 381 D~~~~~----~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~~~~~~~~~~~~~vGl~~~~a~~~~~~~~~~~~~~~~~~~~ 456 (551)
||+... +.+..|..||+++|+||+|.+..+......+...+.+.++.++|....+ .. .|.
T Consensus 273 D~a~~~~~~~~~~~~a~~~g~~~a~n~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~------~~----------~~~ 336 (377)
T PRK04965 273 DCAEINGQVLPFLQPIQLSAMALAKNLLGQNTPLKLPAMLVKVKTPELPLQLAGETQRQ------DL----------RWQ 336 (377)
T ss_pred ecEeECCceeehHHHHHHHHHHHHHHhcCCCcccccCCccEEEecCceeeEECCCCCCC------Cc----------eEE
Confidence 999742 4567799999999999999765433223334455667789999965421 00 011
Q ss_pred cccCCCcEEEEEEEECCCCeEEEEEEECCChhH
Q 008860 457 LSGLPDRIFMKLVLCAKTNKVLGLHMCGEDAPE 489 (551)
Q Consensus 457 ~~~~~~~~~~kl~~~~~~~~ilG~~~~g~~~~e 489 (551)
..+..+..|.|+++ ++|+|+|+.++|+.+.+
T Consensus 337 ~~~~~~~~~~~~~~--~~~~l~g~~~~g~~~~~ 367 (377)
T PRK04965 337 INAESQGMVAKGVD--EAGQLRAFVVSEDRMKE 367 (377)
T ss_pred EEeCCCCeEEEEEc--cCCcEEEEEEEChhHHH
Confidence 11223334667776 57999999999997544
|
|
| >PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-39 Score=333.17 Aligned_cols=358 Identities=14% Similarity=0.152 Sum_probs=254.7
Q ss_pred CccEEEECCChHHHHHHHHHHhCCC--cEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhhccCCCc
Q 008860 72 DFDLFTIGAGSGGVRASRFAANFGA--SVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDESNGFGW 149 (551)
Q Consensus 72 ~~dVvIIGgG~aGl~aA~~l~~~G~--~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~ 149 (551)
..+|||||||+||++||..|++.|. +|+||++. .... +..+.-++.++.
T Consensus 3 ~~~vvIIGgG~AG~~aA~~Lr~~~~~~~I~li~~e---------~~~~----y~r~~l~~~~~~---------------- 53 (396)
T PRK09754 3 EKTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDE---------RHLP----YERPPLSKSMLL---------------- 53 (396)
T ss_pred cCcEEEECChHHHHHHHHHHHhhCCCCCEEEeCCC---------CCCC----CCCCCCCHHHHC----------------
Confidence 3589999999999999999999776 89999931 1000 000000000000
Q ss_pred ccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEe-EEEEecC--CEEEE-cCEEEEeCeEEEcCCCCCCCCC
Q 008860 150 KYGTEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIEG-RGKIVDP--HTVDV-DGKLYSARHILISVGGRPFIPD 225 (551)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~i~~--~~v~v-~g~~~~~d~lviAtG~~p~~p~ 225 (551)
+ ... ... . + ...+++.+.+++++.+ .+..++. +.+.+ ++..+.||+||||||++|+.++
T Consensus 54 ---~-~~~--~~~------~---~--~~~~~~~~~~i~~~~g~~V~~id~~~~~v~~~~g~~~~yd~LViATGs~~~~~p 116 (396)
T PRK09754 54 ---E-DSP--QLQ------Q---V--LPANWWQENNVHLHSGVTIKTLGRDTRELVLTNGESWHWDQLFIATGAAARPLP 116 (396)
T ss_pred ---C-CCc--ccc------c---c--CCHHHHHHCCCEEEcCCEEEEEECCCCEEEECCCCEEEcCEEEEccCCCCCCCC
Confidence 0 000 000 0 0 0012345568999987 4666665 45555 6778999999999999998877
Q ss_pred CCCC--Cceec---chhhhcCC---CCCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCCC-CCHHHHHHHHHHH
Q 008860 226 IPGS--EYAID---SDAALDLP---SKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRG-FDEDIRDFVAEQM 296 (551)
Q Consensus 226 i~g~--~~~~~---~~~~~~~~---~~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~~-~~~~~~~~l~~~l 296 (551)
+++. +.+++ .+++..+. ..+++++|||+|++|+|+|..|++.|.+|+++++.+.+++. +++.+.+.+.+.+
T Consensus 117 ~~~~~~~~v~~~~~~~da~~l~~~~~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l 196 (396)
T PRK09754 117 LLDALGERCFTLRHAGDAARLREVLQPERSVVIVGAGTIGLELAASATQRRCKVTVIELAATVMGRNAPPPVQRYLLQRH 196 (396)
T ss_pred CCCcCCCCEEecCCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCcchhhhcCHHHHHHHHHHH
Confidence 6653 33443 45554433 24789999999999999999999999999999999998876 7888899999999
Q ss_pred HhcCcEEEcCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCcCCCCCCCCccccCeeecCCCCeEeCCCCCCCCCcE
Q 008860 297 SLRGIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNTKNLGLEKVGVKMTKNGAIEVDEYSGTAVPSI 376 (551)
Q Consensus 297 ~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~t~~~~v 376 (551)
+++||+++++++|++++. ++. +.+.+.+|+++++|.||+++|..|++.+ ++..+++.+ ++|.||+++||+.|||
T Consensus 197 ~~~GV~i~~~~~V~~i~~-~~~-~~v~l~~g~~i~aD~Vv~a~G~~pn~~l--~~~~gl~~~--~gi~vd~~~~ts~~~I 270 (396)
T PRK09754 197 QQAGVRILLNNAIEHVVD-GEK-VELTLQSGETLQADVVIYGIGISANDQL--AREANLDTA--NGIVIDEACRTCDPAI 270 (396)
T ss_pred HHCCCEEEeCCeeEEEEc-CCE-EEEEECCCCEEECCEEEECCCCChhhHH--HHhcCCCcC--CCEEECCCCccCCCCE
Confidence 999999999999999976 333 6688889999999999999999999886 566777653 5699999999999999
Q ss_pred EEeCcCCCC---------CCChHHHHHhHHHHHHHHcCCCCCCCCCCCccEEEecCCceEEeeCCHHHHHhcCCCeEEEE
Q 008860 377 WAVGDVTDR---------INLTPVALMEGGALAKTLFQAEPTKPDYSAVPSAVFSQPPIGQVGLSEEQAIQEYGDIDVFT 447 (551)
Q Consensus 377 ya~GD~~~~---------~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~~~~~~~~~~~~~vGl~~~~a~~~~~~~~~~~ 447 (551)
||+|||+.. .++|+.|..||++||+||+|....+. .....|....+.++.++|....+ .+ +..
T Consensus 271 yA~GD~a~~~~~~g~~~~~~~~~~A~~qg~~aa~ni~g~~~~~~-~~p~~~~~~~~~~~~~~G~~~~~------~~-~~~ 342 (396)
T PRK09754 271 FAGGDVAITRLDNGALHRCESWENANNQAQIAAAAMLGLPLPLL-PPPWFWSDQYSDNLQFIGDMRGD------DW-LCR 342 (396)
T ss_pred EEccceEeeeCCCCCEEEECcHHHHHHHHHHHHHHhcCCCCCCC-CCCceEEEeCCccEEEeeCCCCC------EE-EEe
Confidence 999999952 25678999999999999998654322 22223444556789999965421 11 111
Q ss_pred eeccCcccccccCCCcEEEEEEEECCCCeEEEEEEECCChhHHHHHHHHHHHCCCC
Q 008860 448 ANFRPLKATLSGLPDRIFMKLVLCAKTNKVLGLHMCGEDAPEIVQGFAVAVKAGLT 503 (551)
Q Consensus 448 ~~~~~~~~~~~~~~~~~~~kl~~~~~~~~ilG~~~~g~~~~e~i~~~~~~i~~~~~ 503 (551)
. +.....|+.+++ ++|+|+|+..+|+.. -...+..+|+.+..
T Consensus 343 ~----------~~~~~~~~~~~~--~~~~l~g~~~~~~~~--~~~~~~~~~~~~~~ 384 (396)
T PRK09754 343 G----------NPETQKAIWFNL--QNGVLIGAVTLNQGR--EIRPIRKWIQSGKT 384 (396)
T ss_pred c----------CCCCceEEEEEe--eCCEEEEEEEECCHH--HHHHHHHHHHCCCC
Confidence 0 112233555444 579999999999742 23455566777765
|
|
| >TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-39 Score=354.25 Aligned_cols=365 Identities=21% Similarity=0.287 Sum_probs=266.1
Q ss_pred EEEECCChHHHHHHHHHHhC---CCcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhhccCCCccc
Q 008860 75 LFTIGAGSGGVRASRFAANF---GASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDESNGFGWKY 151 (551)
Q Consensus 75 VvIIGgG~aGl~aA~~l~~~---G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~~ 151 (551)
|||||||+||+++|.+|++. +++|+|||+ ...++ +..+..+..+
T Consensus 1 iVIIG~G~AG~~aa~~l~~~~~~~~~Itvi~~---------e~~~~----y~r~~L~~~l-------------------- 47 (785)
T TIGR02374 1 LVLVGNGMAGHRCIEEVLKLNRHMFEITIFGE---------EPHPN----YNRILLSSVL-------------------- 47 (785)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCCeEEEEeC---------CCCCC----cccccccHHH--------------------
Confidence 68999999999999999874 579999992 11110 0000000000
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEe-EEEEecC--CEEEE-cCEEEEeCeEEEcCCCCCCCCCCC
Q 008860 152 GTEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIEG-RGKIVDP--HTVDV-DGKLYSARHILISVGGRPFIPDIP 227 (551)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~i~~--~~v~v-~g~~~~~d~lviAtG~~p~~p~i~ 227 (551)
.+ ..+.+++ .....+++++.+++++.+ .+..++. +.+.+ ++..+.||+||||||+.|+.|++|
T Consensus 48 ~g--~~~~~~l-----------~~~~~~~~~~~gv~~~~g~~V~~Id~~~k~V~~~~g~~~~yD~LVlATGs~p~~p~ip 114 (785)
T TIGR02374 48 QG--EADLDDI-----------TLNSKDWYEKHGITLYTGETVIQIDTDQKQVITDAGRTLSYDKLILATGSYPFILPIP 114 (785)
T ss_pred CC--CCCHHHc-----------cCCCHHHHHHCCCEEEcCCeEEEEECCCCEEEECCCcEeeCCEEEECCCCCcCCCCCC
Confidence 00 0111111 111123456679999987 5777765 44555 677899999999999999999999
Q ss_pred CCC--cee---cchhhhc---CCCCCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCCC-CCHHHHHHHHHHHHh
Q 008860 228 GSE--YAI---DSDAALD---LPSKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRG-FDEDIRDFVAEQMSL 298 (551)
Q Consensus 228 g~~--~~~---~~~~~~~---~~~~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~~-~~~~~~~~l~~~l~~ 298 (551)
|.+ .++ +.+++.. ....+++++|||+|++|+|+|..|+++|.+|+++++.+.+++. +++...+.+.+.+++
T Consensus 115 G~~~~~v~~~rt~~d~~~i~~~~~~~k~vvVVGgG~~GlE~A~~L~~~G~~Vtvv~~~~~ll~~~ld~~~~~~l~~~l~~ 194 (785)
T TIGR02374 115 GADKKGVYVFRTIEDLDAIMAMAQRFKKAAVIGGGLLGLEAAVGLQNLGMDVSVIHHAPGLMAKQLDQTAGRLLQRELEQ 194 (785)
T ss_pred CCCCCCEEEeCCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHHHHhcCCeEEEEccCCchhhhhcCHHHHHHHHHHHHH
Confidence 965 233 3333332 2235789999999999999999999999999999999998875 899999999999999
Q ss_pred cCcEEEcCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCcCCCCCCCCccccCeeecCCCCeEeCCCCCCCCCcEEE
Q 008860 299 RGIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNTKNLGLEKVGVKMTKNGAIEVDEYSGTAVPSIWA 378 (551)
Q Consensus 299 ~Gv~i~~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~t~~~~vya 378 (551)
.||++++++.++++..++. ...|.+.||+++++|.||+++|.+|++++ ++.++++++ |+|.||+++||+.|||||
T Consensus 195 ~GV~v~~~~~v~~i~~~~~-~~~v~~~dG~~i~~D~Vi~a~G~~Pn~~l--a~~~gl~~~--ggI~Vd~~~~Ts~p~IyA 269 (785)
T TIGR02374 195 KGLTFLLEKDTVEIVGATK-ADRIRFKDGSSLEADLIVMAAGIRPNDEL--AVSAGIKVN--RGIIVNDSMQTSDPDIYA 269 (785)
T ss_pred cCCEEEeCCceEEEEcCCc-eEEEEECCCCEEEcCEEEECCCCCcCcHH--HHhcCCccC--CCEEECCCcccCCCCEEE
Confidence 9999999999999976543 36688899999999999999999999987 667788876 679999999999999999
Q ss_pred eCcCCCCC----CChHHHHHhHHHHHHHHcCCC-CCCCCCCCccEEEecCCceEEeeCCHHHHHhcCCCeEEEEeeccCc
Q 008860 379 VGDVTDRI----NLTPVALMEGGALAKTLFQAE-PTKPDYSAVPSAVFSQPPIGQVGLSEEQAIQEYGDIDVFTANFRPL 453 (551)
Q Consensus 379 ~GD~~~~~----~~~~~A~~~g~~aa~~i~g~~-~~~~~~~~~~~~~~~~~~~~~vGl~~~~a~~~~~~~~~~~~~~~~~ 453 (551)
+|||+... .++..|..||+++|.||+|.+ ..+..........+.+.+++++|...... +.....
T Consensus 270 ~GD~a~~~~~~~gl~~~a~~qa~vaA~ni~g~~~~~~~~~~~~~~lk~~g~~v~s~G~~~~~~-----~~~~~~------ 338 (785)
T TIGR02374 270 VGECAEHNGRVYGLVAPLYEQAKVLADHICGVECEEYEGSDLSAKLKLLGVDVWSAGDAQETE-----RTTSIK------ 338 (785)
T ss_pred eeecceeCCcccccHHHHHHHHHHHHHHhcCCCCcCCCCCccceEEEECCcceEecccCCCCC-----CcEEEE------
Confidence 99999752 467789999999999999876 32222222223446678999999765321 111111
Q ss_pred ccccccCCCcEEEEEEEECCCCeEEEEEEECCChhHHHHHHHHHHHCCCCHHHHc
Q 008860 454 KATLSGLPDRIFMKLVLCAKTNKVLGLHMCGEDAPEIVQGFAVAVKAGLTKADFD 508 (551)
Q Consensus 454 ~~~~~~~~~~~~~kl~~~~~~~~ilG~~~~g~~~~e~i~~~~~~i~~~~~~~~l~ 508 (551)
+.+.....|.|++++ +++|+|++++|+.. + ...+..++.++..+.+..
T Consensus 339 ---~~d~~~~~y~kl~~~--~~rLlGavlvgd~~-~-~~~L~~li~~~~~l~~~~ 386 (785)
T TIGR02374 339 ---IYDEQKGIYKKLVLS--DDKLLGAVLFGDTS-D-YGRLLDMVLKQADISEDP 386 (785)
T ss_pred ---EEcCCCCEEEEEEEE--CCEEEEEEEECCHH-H-HHHHHHHHHcCCCCCcCh
Confidence 112344569999996 57999999999753 3 355566677776655443
|
|
| >PTZ00318 NADH dehydrogenase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-36 Score=312.34 Aligned_cols=279 Identities=21% Similarity=0.305 Sum_probs=213.1
Q ss_pred CccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhhccCCCccc
Q 008860 72 DFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDESNGFGWKY 151 (551)
Q Consensus 72 ~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~~ 151 (551)
+.+|||||||+||+.+|..|.+.+.+|+|||+ .+... +..++|. ..
T Consensus 10 ~~~vVIvGgG~aGl~~a~~L~~~~~~ItlI~~------~~~~~-------~~~~l~~---------------------~~ 55 (424)
T PTZ00318 10 KPNVVVLGTGWAGAYFVRNLDPKKYNITVISP------RNHML-------FTPLLPQ---------------------TT 55 (424)
T ss_pred CCeEEEECCCHHHHHHHHHhCcCCCeEEEEcC------CCCcc-------hhhhHHH---------------------hc
Confidence 46899999999999999999877899999992 11000 0001110 00
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEeEEEEecC--CEEEE-----------cCEEEEeCeEEEcCC
Q 008860 152 GTEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIEGRGKIVDP--HTVDV-----------DGKLYSARHILISVG 218 (551)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~i~~--~~v~v-----------~g~~~~~d~lviAtG 218 (551)
....+...+.. .+...+...+++++.+++..+|. +.+.+ ++.++.||+||||||
T Consensus 56 --~g~~~~~~~~~-----------~~~~~~~~~~~~~i~~~V~~Id~~~~~v~~~~~~~~~~~~~~g~~i~yD~LViAtG 122 (424)
T PTZ00318 56 --TGTLEFRSICE-----------PVRPALAKLPNRYLRAVVYDVDFEEKRVKCGVVSKSNNANVNTFSVPYDKLVVAHG 122 (424)
T ss_pred --ccCCChHHhHH-----------HHHHHhccCCeEEEEEEEEEEEcCCCEEEEecccccccccCCceEecCCEEEECCC
Confidence 00111121111 12233455689999999988875 45555 345799999999999
Q ss_pred CCCCCCCCCCCC-ce---ecchhhhcC----------C----------CCCCeEEEEcCcHHHHHHHHHHHh--------
Q 008860 219 GRPFIPDIPGSE-YA---IDSDAALDL----------P----------SKPEKIAIVGGGYIALEFAGIFSG-------- 266 (551)
Q Consensus 219 ~~p~~p~i~g~~-~~---~~~~~~~~~----------~----------~~~~~vvViG~G~~g~e~a~~l~~-------- 266 (551)
+.+..|++||.+ +. .+.++...+ . ...++++|||+|++|+|+|..|..
T Consensus 123 s~~~~~~ipG~~e~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~GvE~A~~l~~~~~~~~~~ 202 (424)
T PTZ00318 123 ARPNTFNIPGVEERAFFLKEVNHARGIRKRIVQCIERASLPTTSVEERKRLLHFVVVGGGPTGVEFAAELADFFRDDVRN 202 (424)
T ss_pred cccCCCCCCCHHHcCCCCCCHHHHHHHHHHHHHHHHHhcCCCCChHHHhccCEEEEECCCHHHHHHHHHHHHHHHHHHHh
Confidence 999999999964 21 122221110 0 112489999999999999999875
Q ss_pred ------CCCeEEEEeecCccCCCCCHHHHHHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecC
Q 008860 267 ------LTSEVHVFIRQKKVLRGFDEDIRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATG 340 (551)
Q Consensus 267 ------~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G 340 (551)
.+.+|+++++.+.+++.+++++.+.+++.|+++||+++++++|+++..+ . |.+.+|+++++|.+|+++|
T Consensus 203 ~~~~~~~~~~Vtlv~~~~~ll~~~~~~~~~~~~~~L~~~gV~v~~~~~v~~v~~~--~---v~~~~g~~i~~d~vi~~~G 277 (424)
T PTZ00318 203 LNPELVEECKVTVLEAGSEVLGSFDQALRKYGQRRLRRLGVDIRTKTAVKEVLDK--E---VVLKDGEVIPTGLVVWSTG 277 (424)
T ss_pred hhhcccccCEEEEEcCCCcccccCCHHHHHHHHHHHHHCCCEEEeCCeEEEEeCC--E---EEECCCCEEEccEEEEccC
Confidence 3789999999999999999999999999999999999999999999642 2 6688999999999999999
Q ss_pred cCCCCCCCCccccCeeecCCCCeEeCCCCC-CCCCcEEEeCcCCCC-----CCChHHHHHhHHHHHHHHcC
Q 008860 341 RRPNTKNLGLEKVGVKMTKNGAIEVDEYSG-TAVPSIWAVGDVTDR-----INLTPVALMEGGALAKTLFQ 405 (551)
Q Consensus 341 ~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~-t~~~~vya~GD~~~~-----~~~~~~A~~~g~~aa~~i~g 405 (551)
..|+. + ++.++++++++|+|.||+++| +++|||||+|||+.. ++.+..|++||+++|+||..
T Consensus 278 ~~~~~-~--~~~~~l~~~~~G~I~Vd~~l~~~~~~~IfAiGD~a~~~~~~~~~~~~~A~~qg~~~A~ni~~ 345 (424)
T PTZ00318 278 VGPGP-L--TKQLKVDKTSRGRISVDDHLRVKPIPNVFALGDCAANEERPLPTLAQVASQQGVYLAKEFNN 345 (424)
T ss_pred CCCcc-h--hhhcCCcccCCCcEEeCCCcccCCCCCEEEEeccccCCCCCCCCchHHHHHHHHHHHHHHHH
Confidence 99985 4 567788888889999999999 599999999999983 56788999999999999864
|
|
| >COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-35 Score=295.11 Aligned_cols=277 Identities=20% Similarity=0.271 Sum_probs=213.2
Q ss_pred CccEEEECCChHHHHHHHHHHhC--CCcEEEEccCCC-CCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhhccCCC
Q 008860 72 DFDLFTIGAGSGGVRASRFAANF--GASVAICELPFS-TISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDESNGFG 148 (551)
Q Consensus 72 ~~dVvIIGgG~aGl~aA~~l~~~--G~~V~liE~~~~-~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g 148 (551)
+.+|||||||++|+.+|..|.+. +.+|+|||+..+ .+++.......
T Consensus 3 ~~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~hl~~plL~eva~------------------------------- 51 (405)
T COG1252 3 KKRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDYHLFTPLLYEVAT------------------------------- 51 (405)
T ss_pred CceEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCCCccccchhhhhhhc-------------------------------
Confidence 46899999999999999999996 489999993111 00000000000
Q ss_pred cccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhC-CeEEEEeEEEEecC--CEEEE-cCEEEEeCeEEEcCCCCCCCC
Q 008860 149 WKYGTEPQHDWSTLIANKNAELQRLTGIYKNILINA-GITLIEGRGKIVDP--HTVDV-DGKLYSARHILISVGGRPFIP 224 (551)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~i~~--~~v~v-~g~~~~~d~lviAtG~~p~~p 224 (551)
..++..+ +...+...+... +++++.+++..+|. ++|.+ +++.+.||+||+|+|+.+..+
T Consensus 52 ------g~l~~~~-----------i~~p~~~~~~~~~~v~~~~~~V~~ID~~~k~V~~~~~~~i~YD~LVvalGs~~~~f 114 (405)
T COG1252 52 ------GTLSESE-----------IAIPLRALLRKSGNVQFVQGEVTDIDRDAKKVTLADLGEISYDYLVVALGSETNYF 114 (405)
T ss_pred ------CCCChhh-----------eeccHHHHhcccCceEEEEEEEEEEcccCCEEEeCCCccccccEEEEecCCcCCcC
Confidence 0111111 111223344433 49999999999875 45666 447899999999999999999
Q ss_pred CCCCC-Cc---eecchhhhcC-----------CCCC-----CeEEEEcCcHHHHHHHHHHHhC-------------CCeE
Q 008860 225 DIPGS-EY---AIDSDAALDL-----------PSKP-----EKIAIVGGGYIALEFAGIFSGL-------------TSEV 271 (551)
Q Consensus 225 ~i~g~-~~---~~~~~~~~~~-----------~~~~-----~~vvViG~G~~g~e~a~~l~~~-------------g~~V 271 (551)
.+||. ++ +.+.++..++ .... ..++|+|+|++|+|+|..|.++ ..+|
T Consensus 115 gi~G~~E~a~~lks~edA~~ir~~l~~~fe~a~~~~~~~~~lti~IvGgG~TGVElAgeL~~~~~~l~~~~~~~~~~~~V 194 (405)
T COG1252 115 GIPGAAEYAFGLKTLEDALRLRRHLLEAFEKASQEEDDRALLTIVIVGGGPTGVELAGELAERLHRLLKKFRVDPSELRV 194 (405)
T ss_pred CCCCHHHhCCCCCCHHHHHHHHHHHHHHHHHhhccccccceeEEEEECCChhHHHHHHHHHHHHHHHhhhhcCCccccEE
Confidence 99995 33 2333443221 1111 2699999999999999988654 1389
Q ss_pred EEEeecCccCCCCCHHHHHHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEECCCe-EEEeeEEEEecCcCCCCCCCCc
Q 008860 272 HVFIRQKKVLRGFDEDIRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTNKGT-VDGFSHVMFATGRRPNTKNLGL 350 (551)
Q Consensus 272 tlv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~G~-~i~~d~vi~a~G~~p~~~~l~l 350 (551)
+++++.+.++|.+++++++..++.|+++||++++++.|++++.+. |++.+|+ +|++|.+|||+|.+++.. +
T Consensus 195 ~LVea~p~ILp~~~~~l~~~a~~~L~~~GV~v~l~~~Vt~v~~~~-----v~~~~g~~~I~~~tvvWaaGv~a~~~---~ 266 (405)
T COG1252 195 ILVEAGPRILPMFPPKLSKYAERALEKLGVEVLLGTPVTEVTPDG-----VTLKDGEEEIPADTVVWAAGVRASPL---L 266 (405)
T ss_pred EEEccCchhccCCCHHHHHHHHHHHHHCCCEEEcCCceEEECCCc-----EEEccCCeeEecCEEEEcCCCcCChh---h
Confidence 999999999999999999999999999999999999999997543 7777777 499999999999999886 4
Q ss_pred cc-cCeeecCCCCeEeCCCCCC-CCCcEEEeCcCCCC------CCChHHHHHhHHHHHHHHc
Q 008860 351 EK-VGVKMTKNGAIEVDEYSGT-AVPSIWAVGDVTDR------INLTPVALMEGGALAKTLF 404 (551)
Q Consensus 351 ~~-~gl~~~~~G~i~vd~~~~t-~~~~vya~GD~~~~------~~~~~~A~~~g~~aa~~i~ 404 (551)
++ .+++.|+.|++.||+++|+ ++|+|||+|||+.. |+.+..|.+||+++|+||.
T Consensus 267 ~~l~~~e~dr~Grl~V~~~L~~~~~~~IFa~GD~A~~~~~~p~P~tAQ~A~Qqg~~~a~ni~ 328 (405)
T COG1252 267 KDLSGLETDRRGRLVVNPTLQVPGHPDIFAAGDCAAVIDPRPVPPTAQAAHQQGEYAAKNIK 328 (405)
T ss_pred hhcChhhhccCCCEEeCCCcccCCCCCeEEEeccccCCCCCCCCChhHHHHHHHHHHHHHHH
Confidence 55 4788888999999999996 99999999999974 5788899999999999986
|
|
| >TIGR01292 TRX_reduct thioredoxin-disulfide reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=289.99 Aligned_cols=280 Identities=26% Similarity=0.322 Sum_probs=207.5
Q ss_pred ccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhhccCCCcccC
Q 008860 73 FDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDESNGFGWKYG 152 (551)
Q Consensus 73 ~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~~~ 152 (551)
|||+|||||+||+++|..|++.|++|+||| +...||.|.....+ .+++.+..
T Consensus 1 ~dvvIIG~G~aGl~aA~~l~~~g~~v~lie----------~~~~gg~~~~~~~~---------------~~~~~~~~--- 52 (300)
T TIGR01292 1 YDVIIIGAGPAGLTAAIYAARANLKTLIIE----------GMEPGGQLTTTTEV---------------ENYPGFPE--- 52 (300)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEe----------ccCCCcceeecccc---------------cccCCCCC---
Confidence 699999999999999999999999999999 44477776532110 11111110
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEeEEEEecCC----EEEE-cCEEEEeCeEEEcCCCCCCCCCCC
Q 008860 153 TEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIEGRGKIVDPH----TVDV-DGKLYSARHILISVGGRPFIPDIP 227 (551)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~i~~~----~v~v-~g~~~~~d~lviAtG~~p~~p~i~ 227 (551)
...... +...+.+.+++.+++++...+..+++. .+.. ++..+.||+||+|||+.|..|++|
T Consensus 53 ---~~~~~~-----------~~~~l~~~~~~~gv~~~~~~v~~v~~~~~~~~v~~~~~~~~~~d~liiAtG~~~~~~~i~ 118 (300)
T TIGR01292 53 ---GISGPE-----------LMEKMKEQAVKFGAEIIYEEVIKVDLSDRPFKVKTGDGKEYTAKAVIIATGASARKLGIP 118 (300)
T ss_pred ---CCChHH-----------HHHHHHHHHHHcCCeEEEEEEEEEEecCCeeEEEeCCCCEEEeCEEEECCCCCcccCCCC
Confidence 011111 122333455667899888777666543 3333 557899999999999999988899
Q ss_pred CCCc-----eecchhhhcCCCCCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCCCCCHHHHHHHHHHHHhc-Cc
Q 008860 228 GSEY-----AIDSDAALDLPSKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRDFVAEQMSLR-GI 301 (551)
Q Consensus 228 g~~~-----~~~~~~~~~~~~~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~-Gv 301 (551)
|.+. +............+++++|||+|.+|+|+|..|++.+.+|+++.+.+.+.. ...+.+.+++. ||
T Consensus 119 g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~~~e~a~~l~~~~~~V~~v~~~~~~~~------~~~~~~~l~~~~gv 192 (300)
T TIGR01292 119 GEDEFLGRGVSYCATCDGPFFKNKEVAVVGGGDSAIEEALYLTRIAKKVTLVHRRDKFRA------EKILLDRLRKNPNI 192 (300)
T ss_pred ChhhcCCccEEEeeecChhhcCCCEEEEECCChHHHHHHHHHHhhcCEEEEEEeCcccCc------CHHHHHHHHhCCCe
Confidence 8542 111111111112468999999999999999999999999999999876432 34456667777 99
Q ss_pred EEEcCcccEEEEEcCCceEEEEEC---C--CeEEEeeEEEEecCcCCCCCCCCccccCeeecCCCCeEeCCCCCCCCCcE
Q 008860 302 EFHTEESPQAILKSTDGSLSVKTN---K--GTVDGFSHVMFATGRRPNTKNLGLEKVGVKMTKNGAIEVDEYSGTAVPSI 376 (551)
Q Consensus 302 ~i~~~~~v~~i~~~~~~~~~V~~~---~--G~~i~~d~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~t~~~~v 376 (551)
++++++.+++++.++ ....+.+. + ++++++|.+++|+|++|+.++ ++.. ++++++|++.||++++|++|||
T Consensus 193 ~~~~~~~v~~i~~~~-~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~--l~~~-~~~~~~g~i~v~~~~~t~~~~v 268 (300)
T TIGR01292 193 EFLWNSTVKEIVGDN-KVEGVKIKNTVTGEEEELKVDGVFIAIGHEPNTEL--LKGL-LELDEGGYIVTDEGMRTSVPGV 268 (300)
T ss_pred EEEeccEEEEEEccC-cEEEEEEEecCCCceEEEEccEEEEeeCCCCChHH--HHHh-heecCCCcEEECCCCccCCCCE
Confidence 999999999998654 32344432 2 357999999999999999987 4454 6778889999999999999999
Q ss_pred EEeCcCCC-CCCChHHHHHhHHHHHHHHc
Q 008860 377 WAVGDVTD-RINLTPVALMEGGALAKTLF 404 (551)
Q Consensus 377 ya~GD~~~-~~~~~~~A~~~g~~aa~~i~ 404 (551)
||+|||+. .++.+..|+.||+.||.+|.
T Consensus 269 ya~GD~~~~~~~~~~~A~~~g~~aa~~i~ 297 (300)
T TIGR01292 269 FAAGDVRDKGYRQAVTAAGDGCIAALSAE 297 (300)
T ss_pred EEeecccCcchhhhhhhhhhHHHHHHHHH
Confidence 99999998 57888899999999999986
|
This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070). |
| >PRK10262 thioredoxin reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-34 Score=289.81 Aligned_cols=286 Identities=21% Similarity=0.267 Sum_probs=207.8
Q ss_pred CCccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhhccCCCcc
Q 008860 71 YDFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDESNGFGWK 150 (551)
Q Consensus 71 ~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~ 150 (551)
..+||+||||||||++||..|++.|+++++|| ....||.|....-+ +.++
T Consensus 5 ~~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie----------~~~~gg~~~~~~~~--------------------~~~~ 54 (321)
T PRK10262 5 KHSKLLILGSGPAGYTAAVYAARANLQPVLIT----------GMEKGGQLTTTTEV--------------------ENWP 54 (321)
T ss_pred CcCCEEEECCCHHHHHHHHHHHHCCCCeEEEE----------eecCCCceecCceE--------------------CCCC
Confidence 46899999999999999999999999999999 44578876532111 1111
Q ss_pred cCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEeEEEEec--CCEEEE--cCEEEEeCeEEEcCCCCCCCCCC
Q 008860 151 YGTEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIEGRGKIVD--PHTVDV--DGKLYSARHILISVGGRPFIPDI 226 (551)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~i~--~~~v~v--~g~~~~~d~lviAtG~~p~~p~i 226 (551)
. .....+++.+..+.. +.....++++..+.+..++ ...+.+ +...+.||+||+|||+.|+.|++
T Consensus 55 ~-~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~v~~v~~~~~~~~v~~~~~~~~~d~vilAtG~~~~~~~i 122 (321)
T PRK10262 55 G-DPNDLTGPLLMERMH-----------EHATKFETEIIFDHINKVDLQNRPFRLTGDSGEYTCDALIIATGASARYLGL 122 (321)
T ss_pred C-CCCCCCHHHHHHHHH-----------HHHHHCCCEEEeeEEEEEEecCCeEEEEecCCEEEECEEEECCCCCCCCCCC
Confidence 0 012234444333322 2333345666555543333 233333 34478999999999999999999
Q ss_pred CCCCc-----eecchhhhcCCCCCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCCCCCHHHHHHHHHHHHhcCc
Q 008860 227 PGSEY-----AIDSDAALDLPSKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRDFVAEQMSLRGI 301 (551)
Q Consensus 227 ~g~~~-----~~~~~~~~~~~~~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~Gv 301 (551)
||.+. +..+.........+++++|||+|++|+|+|..|++.+.+|+++++.+.+. .++.+.+.+.+.|++.||
T Consensus 123 ~g~~~~~~~~v~~~~~~~~~~~~g~~vvVvGgG~~g~e~A~~l~~~~~~Vtlv~~~~~~~--~~~~~~~~~~~~l~~~gV 200 (321)
T PRK10262 123 PSEEAFKGRGVSACATCDGFFYRNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFR--AEKILIKRLMDKVENGNI 200 (321)
T ss_pred CCHHHcCCCcEEEeecCCHHHcCCCEEEEECCCHHHHHHHHHHHhhCCEEEEEEECCccC--CCHHHHHHHHhhccCCCe
Confidence 98542 11221111222357899999999999999999999999999999987652 356678888999999999
Q ss_pred EEEcCcccEEEEEcCCceEEEEECCC------eEEEeeEEEEecCcCCCCCCCCccccCeeecCCCCeEeCC-----CCC
Q 008860 302 EFHTEESPQAILKSTDGSLSVKTNKG------TVDGFSHVMFATGRRPNTKNLGLEKVGVKMTKNGAIEVDE-----YSG 370 (551)
Q Consensus 302 ~i~~~~~v~~i~~~~~~~~~V~~~~G------~~i~~d~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~-----~~~ 370 (551)
++++++.++++..++.+...|++.++ +++++|.|++++|+.|+..++ . .++.++ +|+|.||+ +++
T Consensus 201 ~i~~~~~v~~v~~~~~~~~~v~~~~~~~~~~~~~i~~D~vv~a~G~~p~~~l~--~-~~l~~~-~g~i~vd~~~~~~~~~ 276 (321)
T PRK10262 201 ILHTNRTLEEVTGDQMGVTGVRLRDTQNSDNIESLDVAGLFVAIGHSPNTAIF--E-GQLELE-NGYIKVQSGIHGNATQ 276 (321)
T ss_pred EEEeCCEEEEEEcCCccEEEEEEEEcCCCCeEEEEECCEEEEEeCCccChhHh--h-cccccc-CCEEEECCCCcccccc
Confidence 99999999999876544334554322 369999999999999999863 2 245554 58899997 789
Q ss_pred CCCCcEEEeCcCCCC-CCChHHHHHhHHHHHHHHc
Q 008860 371 TAVPSIWAVGDVTDR-INLTPVALMEGGALAKTLF 404 (551)
Q Consensus 371 t~~~~vya~GD~~~~-~~~~~~A~~~g~~aa~~i~ 404 (551)
|++|+|||+|||++. ......|+.+|..||..|.
T Consensus 277 t~~~~VyA~GD~~~~~~~~~~~A~~~g~~Aa~~~~ 311 (321)
T PRK10262 277 TSIPGVFAAGDVMDHIYRQAITSAGTGCMAALDAE 311 (321)
T ss_pred cCCCCEEECeeccCCCcceEEEEehhHHHHHHHHH
Confidence 999999999999975 4566679999999998765
|
|
| >TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-33 Score=301.56 Aligned_cols=284 Identities=21% Similarity=0.260 Sum_probs=204.2
Q ss_pred CCCCccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhhccCCC
Q 008860 69 SHYDFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDESNGFG 148 (551)
Q Consensus 69 ~~~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g 148 (551)
|.+.|||+||||||||++||..|++.|++|+||| +..+||+|....++. +++
T Consensus 1 m~~~yDVvIIGgGpAGL~AA~~lar~g~~V~liE----------~~~~GG~~~~~~~i~---------------~~p--- 52 (555)
T TIGR03143 1 MEEIYDLIIIGGGPAGLSAGIYAGRAKLDTLIIE----------KDDFGGQITITSEVV---------------NYP--- 52 (555)
T ss_pred CCCcCcEEEECCCHHHHHHHHHHHHCCCCEEEEe----------cCCCCceEEeccccc---------------cCC---
Confidence 4557999999999999999999999999999999 567899876433221 011
Q ss_pred cccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEeEEEEecCC----EEEEcCEEEEeCeEEEcCCCCCCCC
Q 008860 149 WKYGTEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIEGRGKIVDPH----TVDVDGKLYSARHILISVGGRPFIP 224 (551)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~i~~~----~v~v~g~~~~~d~lviAtG~~p~~p 224 (551)
+........+.. .+...+.+.+++++.+++..++.. .+..++..+.++++|+|||++|+.|
T Consensus 53 ----g~~~~~~~~l~~-----------~l~~~~~~~gv~~~~~~V~~i~~~~~~~~V~~~~g~~~a~~lVlATGa~p~~~ 117 (555)
T TIGR03143 53 ----GILNTTGPELMQ-----------EMRQQAQDFGVKFLQAEVLDVDFDGDIKTIKTARGDYKTLAVLIATGASPRKL 117 (555)
T ss_pred ----CCcCCCHHHHHH-----------HHHHHHHHcCCEEeccEEEEEEecCCEEEEEecCCEEEEeEEEECCCCccCCC
Confidence 011112222222 222344556888887776666532 2333444689999999999999999
Q ss_pred CCCCCCc-----eecchhhhcCCCCCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCCCCCHHHHHHHHHHHHhc
Q 008860 225 DIPGSEY-----AIDSDAALDLPSKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRDFVAEQMSLR 299 (551)
Q Consensus 225 ~i~g~~~-----~~~~~~~~~~~~~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~ 299 (551)
++||.+. +..+.........+++++|||+|++|+|+|..|+++|.+|+++++.+.+.. .... ..+.++..
T Consensus 118 ~ipG~~~~~~~~v~~~~~~~~~~~~g~~VvVIGgG~~g~E~A~~L~~~g~~Vtli~~~~~~~~--~~~~---~~~~~~~~ 192 (555)
T TIGR03143 118 GFPGEEEFTGRGVAYCATCDGEFFTGMDVFVIGGGFAAAEEAVFLTRYASKVTVIVREPDFTC--AKLI---AEKVKNHP 192 (555)
T ss_pred CCCCHHHhCCceEEEEeecChhhcCCCEEEEECCCHHHHHHHHHHHccCCEEEEEEeCCcccc--CHHH---HHHHHhCC
Confidence 9999632 111111111122478999999999999999999999999999999876532 2222 23334557
Q ss_pred CcEEEcCcccEEEEEcCCceEEEE---ECCCeEE----EeeE----EEEecCcCCCCCCCCccccCeeecCCCCeEeCCC
Q 008860 300 GIEFHTEESPQAILKSTDGSLSVK---TNKGTVD----GFSH----VMFATGRRPNTKNLGLEKVGVKMTKNGAIEVDEY 368 (551)
Q Consensus 300 Gv~i~~~~~v~~i~~~~~~~~~V~---~~~G~~i----~~d~----vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~ 368 (551)
||++++++.|+++..++ ....+. ..+|+.. ++|. |++++|+.|++.++ + .+++++++|+|.||++
T Consensus 193 gV~i~~~~~V~~i~~~~-~v~~v~~~~~~~G~~~~~~~~~D~~~~~Vi~a~G~~Pn~~l~--~-~~l~l~~~G~I~vd~~ 268 (555)
T TIGR03143 193 KIEVKFNTELKEATGDD-GLRYAKFVNNVTGEITEYKAPKDAGTFGVFVFVGYAPSSELF--K-GVVELDKRGYIPTNED 268 (555)
T ss_pred CcEEEeCCEEEEEEcCC-cEEEEEEEECCCCCEEEEeccccccceEEEEEeCCCCChhHH--h-hhcccCCCCeEEeCCc
Confidence 99999999999997543 212222 2456533 3666 99999999999863 3 3578888899999999
Q ss_pred CCCCCCcEEEeCcCCCC-CCChHHHHHhHHHHHHHHc
Q 008860 369 SGTAVPSIWAVGDVTDR-INLTPVALMEGGALAKTLF 404 (551)
Q Consensus 369 ~~t~~~~vya~GD~~~~-~~~~~~A~~~g~~aa~~i~ 404 (551)
++|++|+|||+|||+.. +..+..|+.||++||.+|.
T Consensus 269 ~~Ts~p~IyAaGDv~~~~~~~v~~A~~~G~~Aa~~i~ 305 (555)
T TIGR03143 269 METNVPGVYAAGDLRPKELRQVVTAVADGAIAATSAE 305 (555)
T ss_pred cccCCCCEEEceeccCCCcchheeHHhhHHHHHHHHH
Confidence 99999999999999863 4567789999999999974
|
This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140). |
| >TIGR01316 gltA glutamate synthase (NADPH), homotetrameric | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-34 Score=298.48 Aligned_cols=276 Identities=24% Similarity=0.319 Sum_probs=205.5
Q ss_pred CCccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhhccCCCcc
Q 008860 71 YDFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDESNGFGWK 150 (551)
Q Consensus 71 ~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~ 150 (551)
..+||+|||||+||+++|..|++.|++|+|||+ ...+||.+.+ | +|. +
T Consensus 132 ~~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~---------~~~~GG~l~~-g-ip~------------------~--- 179 (449)
T TIGR01316 132 THKKVAVIGAGPAGLACASELAKAGHSVTVFEA---------LHKPGGVVTY-G-IPE------------------F--- 179 (449)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCcEEEEec---------CCCCCcEeee-c-CCC------------------c---
Confidence 358999999999999999999999999999993 3457776532 1 110 0
Q ss_pred cCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEeEEEEecCCEEEEcCEEEEeCeEEEcCCC-CCCCCCCCCC
Q 008860 151 YGTEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIEGRGKIVDPHTVDVDGKLYSARHILISVGG-RPFIPDIPGS 229 (551)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~i~~~~v~v~g~~~~~d~lviAtG~-~p~~p~i~g~ 229 (551)
..+ .++.. ...+.+.+.+++++.+... ...+.+++....||+||||||+ .|+.|++||.
T Consensus 180 -----~~~-~~~~~-----------~~~~~l~~~gv~~~~~~~v---~~~v~~~~~~~~yd~viiAtGa~~p~~~~ipG~ 239 (449)
T TIGR01316 180 -----RLP-KEIVV-----------TEIKTLKKLGVTFRMNFLV---GKTATLEELFSQYDAVFIGTGAGLPKLMNIPGE 239 (449)
T ss_pred -----cCC-HHHHH-----------HHHHHHHhCCcEEEeCCcc---CCcCCHHHHHhhCCEEEEeCCCCCCCcCCCCCC
Confidence 001 11111 1123456679999887532 2333333223579999999998 6898999996
Q ss_pred C--ceecchhhhcC---------------CCCCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCCCCCHHHHHHH
Q 008860 230 E--YAIDSDAALDL---------------PSKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRDFV 292 (551)
Q Consensus 230 ~--~~~~~~~~~~~---------------~~~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l 292 (551)
+ .+++..+++.. ...+++|+|||+|++|+|+|..+.++|.+|+++.+.+.... + .....
T Consensus 240 ~~~gv~~~~~~l~~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~~~~~--~--~~~~~ 315 (449)
T TIGR01316 240 ELCGVYSANDFLTRANLMKAYEFPHADTPVYAGKSVVVIGGGNTAVDSARTALRLGAEVHCLYRRTREDM--T--ARVEE 315 (449)
T ss_pred CCCCcEEHHHHHHHHhhcccccccccCCcccCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEeecCcccC--C--CCHHH
Confidence 5 35554444321 12468999999999999999999999999999998764211 1 11233
Q ss_pred HHHHHhcCcEEEcCcccEEEEEcCCc-eEEEEEC---------CC-----------eEEEeeEEEEecCcCCCCCCCCcc
Q 008860 293 AEQMSLRGIEFHTEESPQAILKSTDG-SLSVKTN---------KG-----------TVDGFSHVMFATGRRPNTKNLGLE 351 (551)
Q Consensus 293 ~~~l~~~Gv~i~~~~~v~~i~~~~~~-~~~V~~~---------~G-----------~~i~~d~vi~a~G~~p~~~~l~l~ 351 (551)
.+.+++.||++++++.++++..++++ ...|++. +| .++++|.||+|+|..|++.+ ++
T Consensus 316 ~~~l~~~GV~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~D~Vi~AiG~~p~~~~--l~ 393 (449)
T TIGR01316 316 IAHAEEEGVKFHFLCQPVEIIGDEEGNVRAVKFRKMDCQEQIDSGERRFLPCGDAECKLEADAVIVAIGNGSNPIM--AE 393 (449)
T ss_pred HHHHHhCCCEEEeccCcEEEEEcCCCeEEEEEEEEEEecCcCCCCCeeeeecCCceEEEECCEEEECCCCCCCchh--hh
Confidence 45678899999999999999875443 2234332 23 26999999999999999876 67
Q ss_pred ccCeeecCCCCeEeCCCCCCCCCcEEEeCcCCCCCCChHHHHHhHHHHHHHHc
Q 008860 352 KVGVKMTKNGAIEVDEYSGTAVPSIWAVGDVTDRINLTPVALMEGGALAKTLF 404 (551)
Q Consensus 352 ~~gl~~~~~G~i~vd~~~~t~~~~vya~GD~~~~~~~~~~A~~~g~~aa~~i~ 404 (551)
..+++++++|+|.||++++|+.|+|||+|||+..+.++..|+.||+.||.+|.
T Consensus 394 ~~gl~~~~~G~i~vd~~~~Ts~~~VfA~GD~~~g~~~v~~Ai~~G~~AA~~I~ 446 (449)
T TIGR01316 394 TTRLKTSERGTIVVDEDQRTSIPGVFAGGDIILGAATVIRAMGQGKRAAKSIN 446 (449)
T ss_pred ccCcccCCCCeEEeCCCCccCCCCEEEecCCCCCcHHHHHHHHHHHHHHHHHH
Confidence 77899998999999999999999999999999888888999999999999985
|
This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH. |
| >TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-33 Score=300.61 Aligned_cols=283 Identities=23% Similarity=0.346 Sum_probs=208.2
Q ss_pred CCCccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhhccCCCc
Q 008860 70 HYDFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDESNGFGW 149 (551)
Q Consensus 70 ~~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~ 149 (551)
...|||+||||||||++||.+|++.|++|+||| . .+||++.+.-.++ ++.
T Consensus 210 ~~~~dVvIIGgGpAGl~AA~~la~~G~~v~li~----------~-~~GG~~~~~~~~~---------------~~~---- 259 (515)
T TIGR03140 210 LDPYDVLVVGGGPAGAAAAIYAARKGLRTAMVA----------E-RIGGQVKDTVGIE---------------NLI---- 259 (515)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEe----------c-CCCCccccCcCcc---------------ccc----
Confidence 346999999999999999999999999999998 3 3788875321010 000
Q ss_pred ccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEe-EEEEecC--C--EEEE-cCEEEEeCeEEEcCCCCCCC
Q 008860 150 KYGTEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIEG-RGKIVDP--H--TVDV-DGKLYSARHILISVGGRPFI 223 (551)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~i~~--~--~v~v-~g~~~~~d~lviAtG~~p~~ 223 (551)
+.+...+.++.. .+.+.+.+.+++++.+ ++..++. . .+.+ ++..+.||++|+|||++|+.
T Consensus 260 ---~~~~~~~~~l~~-----------~l~~~l~~~gv~i~~~~~V~~I~~~~~~~~v~~~~g~~i~~d~lIlAtGa~~~~ 325 (515)
T TIGR03140 260 ---SVPYTTGSQLAA-----------NLEEHIKQYPIDLMENQRAKKIETEDGLIVVTLESGEVLKAKSVIVATGARWRK 325 (515)
T ss_pred ---ccCCCCHHHHHH-----------HHHHHHHHhCCeEEcCCEEEEEEecCCeEEEEECCCCEEEeCEEEECCCCCcCC
Confidence 011123333322 2233445568888775 4444432 2 3344 56689999999999999999
Q ss_pred CCCCCCCc-----eecchhhhcCCCCCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCCCCCHHHHHHHHHHHHh
Q 008860 224 PDIPGSEY-----AIDSDAALDLPSKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRDFVAEQMSL 298 (551)
Q Consensus 224 p~i~g~~~-----~~~~~~~~~~~~~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~ 298 (551)
|++||.+. +............+++++|||+|++|+|+|..|+..+.+|+++++.+.+.. ...+.+.+++
T Consensus 326 ~~ipG~~~~~~~~v~~~~~~~~~~~~~k~VvViGgG~~g~E~A~~L~~~g~~Vtli~~~~~l~~------~~~l~~~l~~ 399 (515)
T TIGR03140 326 LGVPGEKEYIGKGVAYCPHCDGPFFKGKDVAVIGGGNSGIEAAIDLAGIVRHVTVLEFADELKA------DKVLQDKLKS 399 (515)
T ss_pred CCCCCHHHcCCCeEEEeeccChhhcCCCEEEEECCcHHHHHHHHHHHhcCcEEEEEEeCCcCCh------hHHHHHHHhc
Confidence 99998531 111111111112478999999999999999999999999999998876532 3446667776
Q ss_pred -cCcEEEcCcccEEEEEcCCceEEEEECC---C--eEEEeeEEEEecCcCCCCCCCCccccCeeecCCCCeEeCCCCCCC
Q 008860 299 -RGIEFHTEESPQAILKSTDGSLSVKTNK---G--TVDGFSHVMFATGRRPNTKNLGLEKVGVKMTKNGAIEVDEYSGTA 372 (551)
Q Consensus 299 -~Gv~i~~~~~v~~i~~~~~~~~~V~~~~---G--~~i~~d~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~t~ 372 (551)
.||++++++.++++..++++...|.+.+ | +++++|.|++|+|+.|++++ ++.. ++++++|+|.||+++||+
T Consensus 400 ~~gV~i~~~~~v~~i~~~~~~v~~v~~~~~~~~~~~~i~~D~vi~a~G~~Pn~~~--l~~~-~~~~~~G~I~vd~~~~Ts 476 (515)
T TIGR03140 400 LPNVDILTSAQTTEIVGDGDKVTGIRYQDRNSGEEKQLDLDGVFVQIGLVPNTEW--LKDA-VELNRRGEIVIDERGRTS 476 (515)
T ss_pred CCCCEEEECCeeEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEEEeCCcCCchH--Hhhh-cccCCCCeEEECCCCCCC
Confidence 5999999999999987654433465543 2 46999999999999999997 4444 777888999999999999
Q ss_pred CCcEEEeCcCCCCC-CChHHHHHhHHHHHHHHcC
Q 008860 373 VPSIWAVGDVTDRI-NLTPVALMEGGALAKTLFQ 405 (551)
Q Consensus 373 ~~~vya~GD~~~~~-~~~~~A~~~g~~aa~~i~g 405 (551)
+|+|||+|||+..+ +++..|+.+|..||.++.+
T Consensus 477 ~p~IyAaGDv~~~~~~~~~~A~~~G~~Aa~~i~~ 510 (515)
T TIGR03140 477 VPGIFAAGDVTTVPYKQIIIAMGEGAKAALSAFD 510 (515)
T ss_pred CCCEEEcccccCCccceEEEEEccHHHHHHHHHH
Confidence 99999999999864 5677899999999998864
|
This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP. |
| >COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-34 Score=293.06 Aligned_cols=370 Identities=22% Similarity=0.285 Sum_probs=274.2
Q ss_pred CccEEEECCChHHHHHHHHHHh---CCCcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhhccCCC
Q 008860 72 DFDLFTIGAGSGGVRASRFAAN---FGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDESNGFG 148 (551)
Q Consensus 72 ~~dVvIIGgG~aGl~aA~~l~~---~G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g 148 (551)
..++||||.|++|..+..++.+ .-++|+++-. .+.... ....-+..
T Consensus 3 k~klvvvGnGmag~r~iEell~~~~~~~~iTvfg~------Ep~~nY-------~Ri~Ls~v------------------ 51 (793)
T COG1251 3 KQKLVIIGNGMAGHRTIEELLESAPDLYDITVFGE------EPRPNY-------NRILLSSV------------------ 51 (793)
T ss_pred ceeEEEEecccchhhHHHHHHhcCcccceEEEecc------CCCccc-------cceeeccc------------------
Confidence 3579999999999999999998 3468999861 000000 00000000
Q ss_pred cccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEe-EEEEecCCEEEE---cCEEEEeCeEEEcCCCCCCCC
Q 008860 149 WKYGTEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIEG-RGKIVDPHTVDV---DGKLYSARHILISVGGRPFIP 224 (551)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~i~~~~v~v---~g~~~~~d~lviAtG~~p~~p 224 (551)
-.+.. ..+.+.....+++++.+|+++.+ .+.++|.....+ .++.+.||+||+||||.|++|
T Consensus 52 ----l~~~~-----------~~edi~l~~~dwy~~~~i~L~~~~~v~~idr~~k~V~t~~g~~~~YDkLilATGS~pfi~ 116 (793)
T COG1251 52 ----LAGEK-----------TAEDISLNRNDWYEENGITLYTGEKVIQIDRANKVVTTDAGRTVSYDKLIIATGSYPFIL 116 (793)
T ss_pred ----cCCCc-----------cHHHHhccchhhHHHcCcEEEcCCeeEEeccCcceEEccCCcEeecceeEEecCcccccc
Confidence 00001 12223333346778889999988 477787654444 788999999999999999999
Q ss_pred CCCCCC--ce---ecchhhhcC---CCCCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCCC-CCHHHHHHHHHH
Q 008860 225 DIPGSE--YA---IDSDAALDL---PSKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRG-FDEDIRDFVAEQ 295 (551)
Q Consensus 225 ~i~g~~--~~---~~~~~~~~~---~~~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~~-~~~~~~~~l~~~ 295 (551)
++||.+ .+ .+.++...+ .+..++.+|||+|..|+|+|..|...|.++++++-.+.++.. +|+.....|++.
T Consensus 117 PiPG~~~~~v~~~R~i~D~~am~~~ar~~~~avVIGGGLLGlEaA~~L~~~Gm~~~Vvh~~~~lMerQLD~~ag~lL~~~ 196 (793)
T COG1251 117 PIPGSDLPGVFVYRTIDDVEAMLDCARNKKKAVVIGGGLLGLEAARGLKDLGMEVTVVHIAPTLMERQLDRTAGRLLRRK 196 (793)
T ss_pred CCCCCCCCCeeEEecHHHHHHHHHHHhccCCcEEEccchhhhHHHHHHHhCCCceEEEeecchHHHHhhhhHHHHHHHHH
Confidence 999976 23 344554432 233556899999999999999999999999999999998865 999999999999
Q ss_pred HHhcCcEEEcCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCcCCCCCCCCccccCeeecCCCCeEeCCCCCCCCCc
Q 008860 296 MSLRGIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNTKNLGLEKVGVKMTKNGAIEVDEYSGTAVPS 375 (551)
Q Consensus 296 l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~t~~~~ 375 (551)
++++|++++++...+++.. .+.+..+.++||+.+++|.||+|+|.+||.++ ...+|+++++ +|.||++|||++|+
T Consensus 197 le~~Gi~~~l~~~t~ei~g-~~~~~~vr~~DG~~i~ad~VV~a~GIrPn~el--a~~aGlavnr--GIvvnd~mqTsdpd 271 (793)
T COG1251 197 LEDLGIKVLLEKNTEEIVG-EDKVEGVRFADGTEIPADLVVMAVGIRPNDEL--AKEAGLAVNR--GIVVNDYMQTSDPD 271 (793)
T ss_pred HHhhcceeecccchhhhhc-CcceeeEeecCCCcccceeEEEecccccccHh--HHhcCcCcCC--CeeecccccccCCC
Confidence 9999999999998888876 34457899999999999999999999999998 8899999988 79999999999999
Q ss_pred EEEeCcCCCC----CCChHHHHHhHHHHHHHHcCCCCC-CCCCCCccEEEecCCceEEeeCCHHHHHhcCCCeEEEEeec
Q 008860 376 IWAVGDVTDR----INLTPVALMEGGALAKTLFQAEPT-KPDYSAVPSAVFSQPPIGQVGLSEEQAIQEYGDIDVFTANF 450 (551)
Q Consensus 376 vya~GD~~~~----~~~~~~A~~~g~~aa~~i~g~~~~-~~~~~~~~~~~~~~~~~~~vGl~~~~a~~~~~~~~~~~~~~ 450 (551)
|||+|+|+.. +.+...+..|++++|+++++.... +......+....+.-++.+.|--. + ..+....++.
T Consensus 272 IYAvGEcae~~g~~yGLVaP~yeq~~v~a~hl~~~~~~~y~gsv~stkLKv~Gvdl~S~GD~~-e--~~~~~~iv~~--- 345 (793)
T COG1251 272 IYAVGECAEHRGKVYGLVAPLYEQAKVLADHLCGGEAEAYEGSVTSTKLKVSGVDVFSAGDFQ-E--TEGAESIVFR--- 345 (793)
T ss_pred eeehhhHHHhcCccceehhHHHHHHHHHHHHhccCcccccccccchhhhcccccceeeccchh-h--cCCCceEEEe---
Confidence 9999999985 578888999999999999987653 222222222344455666666333 1 1111222221
Q ss_pred cCcccccccCCCcEEEEEEEECCCCeEEEEEEECCChhHHHHHHHHHHHCCCCHHHHccC
Q 008860 451 RPLKATLSGLPDRIFMKLVLCAKTNKVLGLHMCGEDAPEIVQGFAVAVKAGLTKADFDAT 510 (551)
Q Consensus 451 ~~~~~~~~~~~~~~~~kl~~~~~~~~ilG~~~~g~~~~e~i~~~~~~i~~~~~~~~l~~~ 510 (551)
+.....|-|+++ ++++|+|+.++|+-+. =+-|-.+|..+.+++++.+.
T Consensus 346 --------D~~~~iYKrlvL--~dd~IvgavL~GDt~d--~~~l~~li~~~~~~se~r~~ 393 (793)
T COG1251 346 --------DEQRGIYKKLVL--KDDKIVGAVLYGDTSD--GGWLLDLILKGADISEIRDT 393 (793)
T ss_pred --------cccccceeEEEE--eCCeEEEEEEEeeccc--chHHHHHHhcCCCccccchh
Confidence 233445888888 5789999999998432 14466778888888888654
|
|
| >COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-33 Score=272.37 Aligned_cols=277 Identities=28% Similarity=0.387 Sum_probs=209.0
Q ss_pred CCccEEEECCChHHHHHHHHHHhCCCc-EEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhhccCCCc
Q 008860 71 YDFDLFTIGAGSGGVRASRFAANFGAS-VAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDESNGFGW 149 (551)
Q Consensus 71 ~~~dVvIIGgG~aGl~aA~~l~~~G~~-V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~ 149 (551)
++|||+|||||||||+||.++++.+++ ++|+| ....||..... ..+.+++.+.
T Consensus 2 ~~~DviIIG~GPAGl~AAiya~r~~l~~~li~~----------~~~~gg~~~~~---------------~~venypg~~- 55 (305)
T COG0492 2 KIYDVIIIGGGPAGLTAAIYAARAGLKVVLILE----------GGEPGGQLTKT---------------TDVENYPGFP- 55 (305)
T ss_pred ceeeEEEECCCHHHHHHHHHHHHcCCCcEEEEe----------cCCcCCccccc---------------eeecCCCCCc-
Confidence 469999999999999999999999998 77777 55566553321 1223333321
Q ss_pred ccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEeEEEEecC----CEEEEcCEEEEeCeEEEcCCCCCCCCC
Q 008860 150 KYGTEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIEGRGKIVDP----HTVDVDGKLYSARHILISVGGRPFIPD 225 (551)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~i~~----~~v~v~g~~~~~d~lviAtG~~p~~p~ 225 (551)
.......++.... +.....+++++...+..++. +.+.++..++++++||||||..++.|.
T Consensus 56 -----~~~~g~~L~~~~~-----------~~a~~~~~~~~~~~v~~v~~~~~~F~v~t~~~~~~ak~vIiAtG~~~~~~~ 119 (305)
T COG0492 56 -----GGILGPELMEQMK-----------EQAEKFGVEIVEDEVEKVELEGGPFKVKTDKGTYEAKAVIIATGAGARKLG 119 (305)
T ss_pred -----cCCchHHHHHHHH-----------HHHhhcCeEEEEEEEEEEeecCceEEEEECCCeEEEeEEEECcCCcccCCC
Confidence 1234445444443 33345588888876666543 345554445999999999999999998
Q ss_pred CCCCC--------ceecchhhhcCCCCCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCCCCCHHHHHHHHHHHH
Q 008860 226 IPGSE--------YAIDSDAALDLPSKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRDFVAEQMS 297 (551)
Q Consensus 226 i~g~~--------~~~~~~~~~~~~~~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~ 297 (551)
+||.. ++.+++. ....++|+|||+|.+++|.|.+|.+.+.+||+++|++.+.. .+.+.+.++
T Consensus 120 ~~~e~e~~g~gv~yc~~cdg----~~~~k~v~ViGgG~sAve~Al~L~~~a~~Vtlv~r~~~~ra------~~~~~~~l~ 189 (305)
T COG0492 120 VPGEEEFEGKGVSYCATCDG----FFKGKDVVVIGGGDSAVEEALYLSKIAKKVTLVHRRDEFRA------EEILVERLK 189 (305)
T ss_pred CCcchhhcCCceEEeeecCc----cccCCeEEEEcCCHHHHHHHHHHHHhcCeEEEEecCcccCc------CHHHHHHHH
Confidence 87532 3445555 22357999999999999999999999999999999987644 344555666
Q ss_pred hc-CcEEEcCcccEEEEEcCCceEEEEECC--C--eEEEeeEEEEecCcCCCCCCCCccccCeeecCCCCeEeCCCCCCC
Q 008860 298 LR-GIEFHTEESPQAILKSTDGSLSVKTNK--G--TVDGFSHVMFATGRRPNTKNLGLEKVGVKMTKNGAIEVDEYSGTA 372 (551)
Q Consensus 298 ~~-Gv~i~~~~~v~~i~~~~~~~~~V~~~~--G--~~i~~d~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~t~ 372 (551)
++ +|++++++.+.++..++ +..|++.+ | +.+.+|.+++++|..|++++ +...++ ++++|+|.||+.++||
T Consensus 190 ~~~~i~~~~~~~i~ei~G~~--v~~v~l~~~~~~~~~~~~~gvf~~iG~~p~~~~--~~~~~~-~~~~g~I~v~~~~~Ts 264 (305)
T COG0492 190 KNVKIEVLTNTVVKEILGDD--VEGVVLKNVKGEEKELPVDGVFIAIGHLPNTEL--LKGLGV-LDENGYIVVDEEMETS 264 (305)
T ss_pred hcCCeEEEeCCceeEEecCc--cceEEEEecCCceEEEEeceEEEecCCCCchHH--Hhhccc-cCCCCcEEcCCCcccC
Confidence 55 89999999999998865 23455544 3 26899999999999999987 556556 7899999999999999
Q ss_pred CCcEEEeCcCCCCC-CChHHHHHhHHHHHHHHc
Q 008860 373 VPSIWAVGDVTDRI-NLTPVALMEGGALAKTLF 404 (551)
Q Consensus 373 ~~~vya~GD~~~~~-~~~~~A~~~g~~aa~~i~ 404 (551)
+|+||||||++... ++...|..+|..||.++.
T Consensus 265 vpGifAaGDv~~~~~rqi~ta~~~G~~Aa~~a~ 297 (305)
T COG0492 265 VPGIFAAGDVADKNGRQIATAAGDGAIAALSAE 297 (305)
T ss_pred CCCEEEeEeeccCcccEEeehhhhHHHHHHHHH
Confidence 99999999999975 467789999999998764
|
|
| >KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-33 Score=277.74 Aligned_cols=361 Identities=25% Similarity=0.345 Sum_probs=257.5
Q ss_pred ccEEEECCChHHHHHHHHHHhCCC--cEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhhccCCCcc
Q 008860 73 FDLFTIGAGSGGVRASRFAANFGA--SVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDESNGFGWK 150 (551)
Q Consensus 73 ~dVvIIGgG~aGl~aA~~l~~~G~--~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~ 150 (551)
..++|||+|++|.-|+..+++.|. +++|+-..+. .|.
T Consensus 75 r~fvivGgG~~g~vaie~~r~~g~~~ri~l~~~~~~-------------------~py---------------------- 113 (478)
T KOG1336|consen 75 RHFVIVGGGPGGAVAIETLRQVGFTERIALVKREYL-------------------LPY---------------------- 113 (478)
T ss_pred ceEEEEcCCchhhhhHhhHHhhCCCcceEEEecccc-------------------Ccc----------------------
Confidence 569999999999999999999775 6777651110 110
Q ss_pred cCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEeE-EEEec--CCEEEE-cCEEEEeCeEEEcCCCCCCCCCC
Q 008860 151 YGTEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIEGR-GKIVD--PHTVDV-DGKLYSARHILISVGGRPFIPDI 226 (551)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~i~--~~~v~v-~g~~~~~d~lviAtG~~p~~p~i 226 (551)
+...+........+.+.....+++++.+++++.+. +..+| .+++.. +|+.+.|++++||||+.++.|++
T Consensus 114 -------dr~~Ls~~~~~~~~~~a~r~~e~Yke~gIe~~~~t~v~~~D~~~K~l~~~~Ge~~kys~LilATGs~~~~l~~ 186 (478)
T KOG1336|consen 114 -------DRARLSKFLLTVGEGLAKRTPEFYKEKGIELILGTSVVKADLASKTLVLGNGETLKYSKLIIATGSSAKTLDI 186 (478)
T ss_pred -------cchhcccceeeccccccccChhhHhhcCceEEEcceeEEeeccccEEEeCCCceeecceEEEeecCccccCCC
Confidence 00000000000111122223346777899998874 44454 455655 89999999999999999999999
Q ss_pred CCCC--cee---cchhhh---cCCCCCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCCC-CCHHHHHHHHHHHH
Q 008860 227 PGSE--YAI---DSDAAL---DLPSKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRG-FDEDIRDFVAEQMS 297 (551)
Q Consensus 227 ~g~~--~~~---~~~~~~---~~~~~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~~-~~~~~~~~l~~~l~ 297 (551)
||.+ .+. ..++.. ........++++|+|++|+|++..|...+.+||++++.+.+++. +.+.+.+.+.++++
T Consensus 187 pG~~~~nv~~ireieda~~l~~~~~~~~~vV~vG~G~ig~Evaa~l~~~~~~VT~V~~e~~~~~~lf~~~i~~~~~~y~e 266 (478)
T KOG1336|consen 187 PGVELKNVFYLREIEDANRLVAAIQLGGKVVCVGGGFIGMEVAAALVSKAKSVTVVFPEPWLLPRLFGPSIGQFYEDYYE 266 (478)
T ss_pred CCccccceeeeccHHHHHHHHHHhccCceEEEECchHHHHHHHHHHHhcCceEEEEccCccchhhhhhHHHHHHHHHHHH
Confidence 9975 232 222222 22234678999999999999999999999999999999999987 89999999999999
Q ss_pred hcCcEEEcCcccEEEEEcCCc-eEEEEECCCeEEEeeEEEEecCcCCCCCCCCccccCeeecCCCCeEeCCCCCCCCCcE
Q 008860 298 LRGIEFHTEESPQAILKSTDG-SLSVKTNKGTVDGFSHVMFATGRRPNTKNLGLEKVGVKMTKNGAIEVDEYSGTAVPSI 376 (551)
Q Consensus 298 ~~Gv~i~~~~~v~~i~~~~~~-~~~V~~~~G~~i~~d~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~t~~~~v 376 (551)
++||++++++.+.+++...++ ++.|.+.||++++||.|++++|.+|++.+ ++. +..++++|+|.||+.+||++|||
T Consensus 267 ~kgVk~~~~t~~s~l~~~~~Gev~~V~l~dg~~l~adlvv~GiG~~p~t~~--~~~-g~~~~~~G~i~V~~~f~t~~~~V 343 (478)
T KOG1336|consen 267 NKGVKFYLGTVVSSLEGNSDGEVSEVKLKDGKTLEADLVVVGIGIKPNTSF--LEK-GILLDSKGGIKVDEFFQTSVPNV 343 (478)
T ss_pred hcCeEEEEecceeecccCCCCcEEEEEeccCCEeccCeEEEeecccccccc--ccc-cceecccCCEeehhceeeccCCc
Confidence 999999999999999987754 67799999999999999999999999998 444 88889999999999999999999
Q ss_pred EEeCcCCCCC----------CChHHHHHhHHHHHHHHcCCCCCCCCCCCccE--EEecCCceEEeeCCHHHHHhcCCCeE
Q 008860 377 WAVGDVTDRI----------NLTPVALMEGGALAKTLFQAEPTKPDYSAVPS--AVFSQPPIGQVGLSEEQAIQEYGDID 444 (551)
Q Consensus 377 ya~GD~~~~~----------~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~~~--~~~~~~~~~~vGl~~~~a~~~~~~~~ 444 (551)
||+||++..+ .++..|..+|+.++..+....... ++.+|. ..+....+-+.|.+ ..+..
T Consensus 344 yAiGDva~fp~~~~~~~~~v~H~~~A~~~g~~av~ai~~~~~~~--~~~lPyf~t~~f~~~~~~~G~g-------~~~~v 414 (478)
T KOG1336|consen 344 YAIGDVATFPLKGYGEDRRVEHVDHARASGRQAVKAIKMAPQDA--YDYLPYFYTRFFSLSWRFAGDG-------VGDVV 414 (478)
T ss_pred ccccceeecccccccccccchHHHHHHHHHHhhhhhhhccCccc--ccccchHHHHHhhhhccccCcC-------cccee
Confidence 9999999852 445568888886555554322222 334442 11111122222222 00111
Q ss_pred EEEeeccCcccccccCCCcEEEEEEEECCCCeEEEEEEECCChhHHHHHHHHHHHCCCCHHHHc
Q 008860 445 VFTANFRPLKATLSGLPDRIFMKLVLCAKTNKVLGLHMCGEDAPEIVQGFAVAVKAGLTKADFD 508 (551)
Q Consensus 445 ~~~~~~~~~~~~~~~~~~~~~~kl~~~~~~~~ilG~~~~g~~~~e~i~~~~~~i~~~~~~~~l~ 508 (551)
... ..+...|+..++ + +..+|+..=|.. .+..++++..++++..+..+.
T Consensus 415 ~~G-----------~~e~~~f~ay~~--k-~~~v~a~~~~g~-~~~~~~~a~l~~~~~~v~~~~ 463 (478)
T KOG1336|consen 415 LFG-----------DLEPGSFGAYWI--K-GDKVGAVAEGGR-DEEVSQFAKLARQGPEVTSLK 463 (478)
T ss_pred eec-----------ccccccceeeEe--e-ccEEEEEeccCC-ChHHHHHHHHHhcCCcchhhh
Confidence 110 123334777777 4 778888776543 378899999999998877643
|
|
| >PRK12831 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-33 Score=290.56 Aligned_cols=276 Identities=25% Similarity=0.336 Sum_probs=203.4
Q ss_pred CCccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhhccCCCcc
Q 008860 71 YDFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDESNGFGWK 150 (551)
Q Consensus 71 ~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~ 150 (551)
..+||+||||||||++||..|++.|++|+|+|+ ...+||.+.+ | +|. | .
T Consensus 139 ~~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~---------~~~~GG~l~~-g-ip~------------------~--~ 187 (464)
T PRK12831 139 KGKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEA---------LHEPGGVLVY-G-IPE------------------F--R 187 (464)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCCCeEEEEec---------CCCCCCeeee-c-CCC------------------c--c
Confidence 468999999999999999999999999999993 4557887642 1 110 0 0
Q ss_pred cCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEeEEEEecCCEEEEcC--EEEEeCeEEEcCCC-CCCCCCCC
Q 008860 151 YGTEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIEGRGKIVDPHTVDVDG--KLYSARHILISVGG-RPFIPDIP 227 (551)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~i~~~~v~v~g--~~~~~d~lviAtG~-~p~~p~i~ 227 (551)
.....+. ....+.+++.|++++.++.. ...+.+++ +.+.||+|+||||+ .|+.+++|
T Consensus 188 ------l~~~~~~-----------~~~~~~~~~~gv~i~~~~~v---~~~v~~~~~~~~~~~d~viiAtGa~~~~~l~ip 247 (464)
T PRK12831 188 ------LPKETVV-----------KKEIENIKKLGVKIETNVVV---GKTVTIDELLEEEGFDAVFIGSGAGLPKFMGIP 247 (464)
T ss_pred ------CCccHHH-----------HHHHHHHHHcCCEEEcCCEE---CCcCCHHHHHhccCCCEEEEeCCCCCCCCCCCC
Confidence 0001111 11123456679998887522 12233322 34579999999998 68889999
Q ss_pred CCC--ceecchhhhcC--------------CCCCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCc-cCCCCCHHHHH
Q 008860 228 GSE--YAIDSDAALDL--------------PSKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKK-VLRGFDEDIRD 290 (551)
Q Consensus 228 g~~--~~~~~~~~~~~--------------~~~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~-~l~~~~~~~~~ 290 (551)
|.+ .+++..+++.. ...+++|+|||+|++|+|+|..+.++|.+|+++.+.+. -++... .
T Consensus 248 G~~~~gV~~~~~~l~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~~~~~m~a~~----~ 323 (464)
T PRK12831 248 GENLNGVFSANEFLTRVNLMKAYKPEYDTPIKVGKKVAVVGGGNVAMDAARTALRLGAEVHIVYRRSEEELPARV----E 323 (464)
T ss_pred CcCCcCcEEHHHHHHHHHhcccccccccCcccCCCeEEEECCcHHHHHHHHHHHHcCCEEEEEeecCcccCCCCH----H
Confidence 965 46665555421 13578999999999999999999999999999998653 122111 1
Q ss_pred HHHHHHHhcCcEEEcCcccEEEEEcCCc-eEEEEEC------------------CCe--EEEeeEEEEecCcCCCCCCCC
Q 008860 291 FVAEQMSLRGIEFHTEESPQAILKSTDG-SLSVKTN------------------KGT--VDGFSHVMFATGRRPNTKNLG 349 (551)
Q Consensus 291 ~l~~~l~~~Gv~i~~~~~v~~i~~~~~~-~~~V~~~------------------~G~--~i~~d~vi~a~G~~p~~~~l~ 349 (551)
.+ +.+++.||++++++.+.++..++++ ...|++. +|+ ++++|.||+|+|..|++.+
T Consensus 324 e~-~~a~~eGV~i~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~d~~Gr~~~~~~~g~~~~i~~D~Vi~AiG~~p~~~~-- 400 (464)
T PRK12831 324 EV-HHAKEEGVIFDLLTNPVEILGDENGWVKGMKCIKMELGEPDASGRRRPVEIEGSEFVLEVDTVIMSLGTSPNPLI-- 400 (464)
T ss_pred HH-HHHHHcCCEEEecccceEEEecCCCeEEEEEEEEEEecCcCCCCCccceecCCceEEEECCEEEECCCCCCChhh--
Confidence 12 3456789999999999999865443 2223321 222 5999999999999999876
Q ss_pred ccc-cCeeecCCCCeEeCCC-CCCCCCcEEEeCcCCCCCCChHHHHHhHHHHHHHHc
Q 008860 350 LEK-VGVKMTKNGAIEVDEY-SGTAVPSIWAVGDVTDRINLTPVALMEGGALAKTLF 404 (551)
Q Consensus 350 l~~-~gl~~~~~G~i~vd~~-~~t~~~~vya~GD~~~~~~~~~~A~~~g~~aa~~i~ 404 (551)
+.. .+++++++|+|.||++ ++|+.|+|||+|||+..+.++..|+.+|+.||.+|.
T Consensus 401 ~~~~~gl~~~~~G~i~vd~~~~~Ts~pgVfAaGD~~~g~~~v~~Ai~~G~~AA~~I~ 457 (464)
T PRK12831 401 SSTTKGLKINKRGCIVADEETGLTSKEGVFAGGDAVTGAATVILAMGAGKKAAKAID 457 (464)
T ss_pred hcccCCceECCCCcEEECCCCCccCCCCEEEeCCCCCCchHHHHHHHHHHHHHHHHH
Confidence 444 6888888899999998 999999999999999988888999999999999875
|
|
| >TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-33 Score=285.68 Aligned_cols=275 Identities=21% Similarity=0.300 Sum_probs=206.6
Q ss_pred cEEEECCChHHHHHHHHHHh---CCCcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhhccCCCcc
Q 008860 74 DLFTIGAGSGGVRASRFAAN---FGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDESNGFGWK 150 (551)
Q Consensus 74 dVvIIGgG~aGl~aA~~l~~---~G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~ 150 (551)
+|||||||+||+.+|.+|++ .+.+|+|||+ ... .....+.|. +
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~----------~~~---~~~~~~~~~--------------------~- 46 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINP----------SST---TPYSGMLPG--------------------M- 46 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECC----------CCC---CcccchhhH--------------------H-
Confidence 48999999999999999974 4689999992 110 000011110 0
Q ss_pred cCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEeEEEEecC--CEEEE-cCEEEEeCeEEEcCCCCCCCCCCC
Q 008860 151 YGTEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIEGRGKIVDP--HTVDV-DGKLYSARHILISVGGRPFIPDIP 227 (551)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~i~~--~~v~v-~g~~~~~d~lviAtG~~p~~p~i~ 227 (551)
.. ...+..+ +.....+++++.+++++.+++..+|. +.+.+ ++++++||+||||||++|..|++|
T Consensus 47 ~~--g~~~~~~-----------~~~~~~~~~~~~gv~~~~~~v~~id~~~~~V~~~~g~~~~yD~LviAtG~~~~~~~i~ 113 (364)
T TIGR03169 47 IA--GHYSLDE-----------IRIDLRRLARQAGARFVIAEATGIDPDRRKVLLANRPPLSYDVLSLDVGSTTPLSGVE 113 (364)
T ss_pred Hh--eeCCHHH-----------hcccHHHHHHhcCCEEEEEEEEEEecccCEEEECCCCcccccEEEEccCCCCCCCCCC
Confidence 00 0011111 11122344566799999999988875 44555 667899999999999999999999
Q ss_pred CCC-cee---cchhhh-------c-C--CCCCCeEEEEcCcHHHHHHHHHHHh----CC--CeEEEEeecCccCCCCCHH
Q 008860 228 GSE-YAI---DSDAAL-------D-L--PSKPEKIAIVGGGYIALEFAGIFSG----LT--SEVHVFIRQKKVLRGFDED 287 (551)
Q Consensus 228 g~~-~~~---~~~~~~-------~-~--~~~~~~vvViG~G~~g~e~a~~l~~----~g--~~Vtlv~~~~~~l~~~~~~ 287 (551)
|.. .++ +.+++. . . ....++++|+|+|++|+|+|..|.+ .| .+|+++ ..+.+++.++++
T Consensus 114 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~E~A~~l~~~~~~~g~~~~V~li-~~~~~l~~~~~~ 192 (364)
T TIGR03169 114 GAADLAVPVKPIENFLARWEALLESADAPPGTKRLAVVGGGAAGVEIALALRRRLPKRGLRGQVTLI-AGASLLPGFPAK 192 (364)
T ss_pred cccccccccCCHHHHHHHHHHHHHHHhcCCCCceEEEECCCHHHHHHHHHHHHHHHhcCCCceEEEE-eCCcccccCCHH
Confidence 842 222 222211 1 1 1235799999999999999999875 34 589999 667777778899
Q ss_pred HHHHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCcCCCCCCCCccccCeeecCCCCeEeCC
Q 008860 288 IRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNTKNLGLEKVGVKMTKNGAIEVDE 367 (551)
Q Consensus 288 ~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~ 367 (551)
+.+.+.+.|++.||+++.++.+++++.+ .+.+.+|+++++|.||+|+|.+|+.. +...++.++++|+|.||+
T Consensus 193 ~~~~~~~~l~~~gV~v~~~~~v~~i~~~-----~v~~~~g~~i~~D~vi~a~G~~p~~~---l~~~gl~~~~~g~i~vd~ 264 (364)
T TIGR03169 193 VRRLVLRLLARRGIEVHEGAPVTRGPDG-----ALILADGRTLPADAILWATGARAPPW---LAESGLPLDEDGFLRVDP 264 (364)
T ss_pred HHHHHHHHHHHCCCEEEeCCeeEEEcCC-----eEEeCCCCEEecCEEEEccCCChhhH---HHHcCCCcCCCCeEEECC
Confidence 9999999999999999999999988532 36778888999999999999999864 455678888889999999
Q ss_pred CCCC-CCCcEEEeCcCCCC-----CCChHHHHHhHHHHHHHHc
Q 008860 368 YSGT-AVPSIWAVGDVTDR-----INLTPVALMEGGALAKTLF 404 (551)
Q Consensus 368 ~~~t-~~~~vya~GD~~~~-----~~~~~~A~~~g~~aa~~i~ 404 (551)
++|| ++|||||+|||+.. ++.+..|+.||+++|+||.
T Consensus 265 ~l~~~~~~~Iya~GD~~~~~~~~~~~~~~~A~~~g~~~a~ni~ 307 (364)
T TIGR03169 265 TLQSLSHPHVFAAGDCAVITDAPRPKAGVYAVRQAPILAANLR 307 (364)
T ss_pred ccccCCCCCEEEeeeeeecCCCCCCCchHHHHHhHHHHHHHHH
Confidence 9998 99999999999963 3567789999999999986
|
Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown. |
| >PRK15317 alkyl hydroperoxide reductase subunit F; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-32 Score=291.35 Aligned_cols=282 Identities=21% Similarity=0.332 Sum_probs=208.9
Q ss_pred CCccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhhccCCCcc
Q 008860 71 YDFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDESNGFGWK 150 (551)
Q Consensus 71 ~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~ 150 (551)
..|||+||||||||++||.+|++.|++|+||+ . .+||+|...--++ ++.
T Consensus 210 ~~~dvvIIGgGpaGl~aA~~la~~G~~v~li~----------~-~~GG~~~~~~~~~---------------~~~----- 258 (517)
T PRK15317 210 DPYDVLVVGGGPAGAAAAIYAARKGIRTGIVA----------E-RFGGQVLDTMGIE---------------NFI----- 258 (517)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEe----------c-CCCCeeeccCccc---------------ccC-----
Confidence 46999999999999999999999999999998 3 3888875211010 111
Q ss_pred cCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEe-EEEEecC----CEEEE-cCEEEEeCeEEEcCCCCCCCC
Q 008860 151 YGTEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIEG-RGKIVDP----HTVDV-DGKLYSARHILISVGGRPFIP 224 (551)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~i~~----~~v~v-~g~~~~~d~lviAtG~~p~~p 224 (551)
+.+...+.++.. .+.+.+++.++++..+ ++..++. +.+.+ ++..+.||.+|+|||++|+.|
T Consensus 259 --~~~~~~~~~l~~-----------~l~~~~~~~gv~i~~~~~V~~I~~~~~~~~V~~~~g~~i~a~~vViAtG~~~r~~ 325 (517)
T PRK15317 259 --SVPETEGPKLAA-----------ALEEHVKEYDVDIMNLQRASKLEPAAGLIEVELANGAVLKAKTVILATGARWRNM 325 (517)
T ss_pred --CCCCCCHHHHHH-----------HHHHHHHHCCCEEEcCCEEEEEEecCCeEEEEECCCCEEEcCEEEECCCCCcCCC
Confidence 011233443332 2334455668888765 4555543 23444 566899999999999999999
Q ss_pred CCCCCCc-----eecchhhhcCCCCCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCCCCCHHHHHHHHHHHHh-
Q 008860 225 DIPGSEY-----AIDSDAALDLPSKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRDFVAEQMSL- 298 (551)
Q Consensus 225 ~i~g~~~-----~~~~~~~~~~~~~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~- 298 (551)
++||.+. ++...........+++|+|||+|++|+|+|..|+..+.+|+++++.+.+.. .+.+.+.+.+
T Consensus 326 ~ipG~~~~~~~~v~~~~~~~~~~~~gk~VvVVGgG~~g~e~A~~L~~~~~~Vtlv~~~~~l~~------~~~l~~~l~~~ 399 (517)
T PRK15317 326 NVPGEDEYRNKGVAYCPHCDGPLFKGKRVAVIGGGNSGVEAAIDLAGIVKHVTVLEFAPELKA------DQVLQDKLRSL 399 (517)
T ss_pred CCCCHHHhcCceEEEeeccCchhcCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEEECccccc------cHHHHHHHhcC
Confidence 9998532 111111111122468999999999999999999999999999999876532 2345555665
Q ss_pred cCcEEEcCcccEEEEEcCCceEEEEEC---CC--eEEEeeEEEEecCcCCCCCCCCccccCeeecCCCCeEeCCCCCCCC
Q 008860 299 RGIEFHTEESPQAILKSTDGSLSVKTN---KG--TVDGFSHVMFATGRRPNTKNLGLEKVGVKMTKNGAIEVDEYSGTAV 373 (551)
Q Consensus 299 ~Gv~i~~~~~v~~i~~~~~~~~~V~~~---~G--~~i~~d~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~t~~ 373 (551)
.||++++++.++++..+++....+.+. +| +++++|.|++++|+.|++++ ++.. ++++++|+|.||+++||++
T Consensus 400 ~gI~i~~~~~v~~i~~~~g~v~~v~~~~~~~g~~~~i~~D~v~~~~G~~p~~~~--l~~~-v~~~~~g~i~vd~~l~Ts~ 476 (517)
T PRK15317 400 PNVTIITNAQTTEVTGDGDKVTGLTYKDRTTGEEHHLELEGVFVQIGLVPNTEW--LKGT-VELNRRGEIIVDARGATSV 476 (517)
T ss_pred CCcEEEECcEEEEEEcCCCcEEEEEEEECCCCcEEEEEcCEEEEeECCccCchH--Hhhh-eeeCCCCcEEECcCCCCCC
Confidence 599999999999998765443345543 33 35999999999999999987 4444 7888889999999999999
Q ss_pred CcEEEeCcCCCCC-CChHHHHHhHHHHHHHHcC
Q 008860 374 PSIWAVGDVTDRI-NLTPVALMEGGALAKTLFQ 405 (551)
Q Consensus 374 ~~vya~GD~~~~~-~~~~~A~~~g~~aa~~i~g 405 (551)
|+|||+|||+..+ +....|+.+|..||.+++.
T Consensus 477 p~IyAaGDv~~~~~k~~~~A~~eG~~Aa~~~~~ 509 (517)
T PRK15317 477 PGVFAAGDCTTVPYKQIIIAMGEGAKAALSAFD 509 (517)
T ss_pred CCEEECccccCCCCCEEEEhhhhHHHHHHHHHH
Confidence 9999999999864 7788999999999998864
|
|
| >PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-31 Score=280.41 Aligned_cols=276 Identities=22% Similarity=0.297 Sum_probs=201.7
Q ss_pred CCccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhhccCCCcc
Q 008860 71 YDFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDESNGFGWK 150 (551)
Q Consensus 71 ~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~ 150 (551)
..++|+|||||++|+++|..|++.|++|+|+|+ ...+||.+.. + +|. +
T Consensus 139 ~~~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~---------~~~~gG~l~~-g-ip~------------------~--- 186 (457)
T PRK11749 139 TGKKVAVIGAGPAGLTAAHRLARKGYDVTIFEA---------RDKAGGLLRY-G-IPE------------------F--- 186 (457)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEcc---------CCCCCcEeec-c-CCC------------------c---
Confidence 357999999999999999999999999999993 4456666431 1 110 0
Q ss_pred cCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEeEEEEecCCEEEEcCEEEEeCeEEEcCCCC-CCCCCCCCC
Q 008860 151 YGTEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIEGRGKIVDPHTVDVDGKLYSARHILISVGGR-PFIPDIPGS 229 (551)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~i~~~~v~v~g~~~~~d~lviAtG~~-p~~p~i~g~ 229 (551)
. ...++ .......+.+.++++..+... ...+.+++..+.||+||+|||+. |..+++||.
T Consensus 187 -----~-~~~~~-----------~~~~~~~l~~~gv~~~~~~~v---~~~v~~~~~~~~~d~vvlAtGa~~~~~~~i~G~ 246 (457)
T PRK11749 187 -----R-LPKDI-----------VDREVERLLKLGVEIRTNTEV---GRDITLDELRAGYDAVFIGTGAGLPRFLGIPGE 246 (457)
T ss_pred -----c-CCHHH-----------HHHHHHHHHHcCCEEEeCCEE---CCccCHHHHHhhCCEEEEccCCCCCCCCCCCCc
Confidence 0 00111 112223456678999887543 12223322237899999999985 777788886
Q ss_pred C--ceecchhhhcC-------C--CCCCeEEEEcCcHHHHHHHHHHHhCCC-eEEEEeecCc-cCCCCCHHHHHHHHHHH
Q 008860 230 E--YAIDSDAALDL-------P--SKPEKIAIVGGGYIALEFAGIFSGLTS-EVHVFIRQKK-VLRGFDEDIRDFVAEQM 296 (551)
Q Consensus 230 ~--~~~~~~~~~~~-------~--~~~~~vvViG~G~~g~e~a~~l~~~g~-~Vtlv~~~~~-~l~~~~~~~~~~l~~~l 296 (551)
+ .+++..+++.. . ..+++|+|||+|.+|+|+|..+.+.|. +|+++.+.+. .++.. ....+.+
T Consensus 247 ~~~gv~~~~~~l~~~~~~~~~~~~~~g~~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~~~~~~~~~-----~~~~~~~ 321 (457)
T PRK11749 247 NLGGVYSAVDFLTRVNQAVADYDLPVGKRVVVIGGGNTAMDAARTAKRLGAESVTIVYRRGREEMPAS-----EEEVEHA 321 (457)
T ss_pred cCCCcEEHHHHHHHHhhccccccCCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecCcccCCCC-----HHHHHHH
Confidence 4 24444333221 1 247899999999999999999999998 8999998654 23322 2235667
Q ss_pred HhcCcEEEcCcccEEEEEcCCceEEEEE-------------------CCCeEEEeeEEEEecCcCCCCCCCCccccCeee
Q 008860 297 SLRGIEFHTEESPQAILKSTDGSLSVKT-------------------NKGTVDGFSHVMFATGRRPNTKNLGLEKVGVKM 357 (551)
Q Consensus 297 ~~~Gv~i~~~~~v~~i~~~~~~~~~V~~-------------------~~G~~i~~d~vi~a~G~~p~~~~l~l~~~gl~~ 357 (551)
++.||++++++.+.++..++++...|++ .+++++++|.||+|+|..|+..++ ....++.+
T Consensus 322 ~~~GV~i~~~~~v~~i~~~~~~~~~v~~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~p~~~l~-~~~~gl~~ 400 (457)
T PRK11749 322 KEEGVEFEWLAAPVEILGDEGRVTGVEFVRMELGEPDASGRRRVPIEGSEFTLPADLVIKAIGQTPNPLIL-STTPGLEL 400 (457)
T ss_pred HHCCCEEEecCCcEEEEecCCceEEEEEEEEEecCcCCCCCcccCCCCceEEEECCEEEECccCCCCchhh-ccccCccC
Confidence 8899999999999999876543222322 123479999999999999997753 23567888
Q ss_pred cCCCCeEeCC-CCCCCCCcEEEeCcCCCCCCChHHHHHhHHHHHHHHc
Q 008860 358 TKNGAIEVDE-YSGTAVPSIWAVGDVTDRINLTPVALMEGGALAKTLF 404 (551)
Q Consensus 358 ~~~G~i~vd~-~~~t~~~~vya~GD~~~~~~~~~~A~~~g~~aa~~i~ 404 (551)
+++|+|.||+ +++|+.|+|||+|||+..+.++..|+.||+.||.+|.
T Consensus 401 ~~~g~i~vd~~~~~Ts~~~VfA~GD~~~~~~~~~~A~~~G~~aA~~I~ 448 (457)
T PRK11749 401 NRWGTIIADDETGRTSLPGVFAGGDIVTGAATVVWAVGDGKDAAEAIH 448 (457)
T ss_pred CCCCCEEeCCCCCccCCCCEEEeCCcCCCchHHHHHHHHHHHHHHHHH
Confidence 8899999998 8899999999999999877888899999999999875
|
|
| >PRK09853 putative selenate reductase subunit YgfK; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-31 Score=291.05 Aligned_cols=274 Identities=22% Similarity=0.314 Sum_probs=201.1
Q ss_pred CCccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhhccCCCcc
Q 008860 71 YDFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDESNGFGWK 150 (551)
Q Consensus 71 ~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~ 150 (551)
...+|+||||||||++||..|++.|++|+|+|+ ...+||.+.+ .+|. | .
T Consensus 538 tgKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek---------~~~~GG~lr~--~IP~------------------~--R 586 (1019)
T PRK09853 538 SRKKVAVIGAGPAGLAAAYFLARAGHPVTVFER---------EENAGGVVKN--IIPQ------------------F--R 586 (1019)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCeEEEEec---------ccccCcceee--eccc------------------c--c
Confidence 357999999999999999999999999999993 4557887643 1331 0 0
Q ss_pred cCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEeEEEEecCCEEEE-cCEEEEeCeEEEcCCCCC-CCCCCCC
Q 008860 151 YGTEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIEGRGKIVDPHTVDV-DGKLYSARHILISVGGRP-FIPDIPG 228 (551)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~i~~~~v~v-~g~~~~~d~lviAtG~~p-~~p~i~g 228 (551)
.. .++. ....+.+.+.|+++..+... .+.+ +.+...||+||||||+++ ..++++|
T Consensus 587 ------lp-~evL-----------~~die~l~~~GVe~~~gt~V-----di~le~L~~~gYDaVILATGA~~~~~l~IpG 643 (1019)
T PRK09853 587 ------IP-AELI-----------QHDIEFVKAHGVKFEFGCSP-----DLTVEQLKNEGYDYVVVAIGADKNGGLKLEG 643 (1019)
T ss_pred ------cc-HHHH-----------HHHHHHHHHcCCEEEeCcee-----EEEhhhheeccCCEEEECcCCCCCCCCCCCC
Confidence 00 1111 11123455679999887533 1233 234556999999999874 4557887
Q ss_pred CC-ceecchhhhc-------CCCCCCeEEEEcCcHHHHHHHHHHHhC-C-CeEEEEeecC-ccCCCCCHHHHHHHHHHHH
Q 008860 229 SE-YAIDSDAALD-------LPSKPEKIAIVGGGYIALEFAGIFSGL-T-SEVHVFIRQK-KVLRGFDEDIRDFVAEQMS 297 (551)
Q Consensus 229 ~~-~~~~~~~~~~-------~~~~~~~vvViG~G~~g~e~a~~l~~~-g-~~Vtlv~~~~-~~l~~~~~~~~~~l~~~l~ 297 (551)
.+ .+++..+++. ....+++|+|||+|++|+|+|..+.+. | .+|+++.|++ ..++..+++ +.+.+
T Consensus 644 ~~~gV~saldfL~~~k~~~~~~~~GKrVVVIGGGnVAmD~Ar~a~RlgGakeVTLVyRr~~~~MPA~~eE----le~Al- 718 (1019)
T PRK09853 644 GNQNVIKALPFLEEYKNKGTALKLGKHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRTKQEMPAWREE----YEEAL- 718 (1019)
T ss_pred ccCCceehHHHHHHHhhhcccccCCCEEEEECCChHHHHHHHHHHhcCCCceEEEEEccCcccccccHHH----HHHHH-
Confidence 54 3444333332 123578999999999999999998887 4 4899999876 344444333 33333
Q ss_pred hcCcEEEcCcccEEEEEcCCceEE-----------------EEECCCeEEEeeEEEEecCcCCCCCCCCccccCeeecCC
Q 008860 298 LRGIEFHTEESPQAILKSTDGSLS-----------------VKTNKGTVDGFSHVMFATGRRPNTKNLGLEKVGVKMTKN 360 (551)
Q Consensus 298 ~~Gv~i~~~~~v~~i~~~~~~~~~-----------------V~~~~G~~i~~d~vi~a~G~~p~~~~l~l~~~gl~~~~~ 360 (551)
+.||++++++.+.++..+ +. +. +...++.++++|.||+|+|..|++++ ++..|++++++
T Consensus 719 eeGVe~~~~~~p~~I~~d-G~-l~~~~~~lg~~d~~Gr~~~v~tg~~~~I~aD~VIvAIG~~Pntel--le~~GL~ld~~ 794 (1019)
T PRK09853 719 EDGVEFKELLNPESFDAD-GT-LTCRVMKLGEPDESGRRRPVETGETVTLEADTVITAIGEQVDTEL--LKANGIPLDKK 794 (1019)
T ss_pred HcCCEEEeCCceEEEEcC-Cc-EEEEEEEeecccCCCceEEeeCCCeEEEEeCEEEECCCCcCChhH--HHhcCccccCC
Confidence 479999999988888632 21 21 22233457999999999999999987 57788988888
Q ss_pred CCeEeCCCCCCCCCcEEEeCcCCCCCCChHHHHHhHHHHHHHHcCCC
Q 008860 361 GAIEVDEYSGTAVPSIWAVGDVTDRINLTPVALMEGGALAKTLFQAE 407 (551)
Q Consensus 361 G~i~vd~~~~t~~~~vya~GD~~~~~~~~~~A~~~g~~aa~~i~g~~ 407 (551)
|++.||++++|+.|+|||+|||+..+.++..|+.||+.||.+|.+..
T Consensus 795 G~I~VDetlqTs~pgVFAaGD~a~Gp~tvv~Ai~qGr~AA~nI~~~~ 841 (1019)
T PRK09853 795 GWPVVDANGETSLTNVYMIGDVQRGPSTIVAAIADARRAADAILSRE 841 (1019)
T ss_pred CCEEeCCCcccCCCCEEEEeccccCchHHHHHHHHHHHHHHHHhhhc
Confidence 99999999999999999999999888889999999999999998643
|
|
| >PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.5e-30 Score=289.32 Aligned_cols=274 Identities=24% Similarity=0.333 Sum_probs=202.7
Q ss_pred CCccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhhccCCCcc
Q 008860 71 YDFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDESNGFGWK 150 (551)
Q Consensus 71 ~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~ 150 (551)
..+||+||||||||++||..|++.|++|+|||+ ...+||...+ | +|
T Consensus 430 ~~~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~---------~~~~GG~l~~-g-ip----------------------- 475 (752)
T PRK12778 430 NGKKVAVIGSGPAGLSFAGDLAKRGYDVTVFEA---------LHEIGGVLKY-G-IP----------------------- 475 (752)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCeEEEEec---------CCCCCCeeee-c-CC-----------------------
Confidence 457999999999999999999999999999993 3557777432 1 22
Q ss_pred cCCCCCCChH-HHHHHHHHHHHHHHHHHHHHHHhCCeEEEEeEEEEecCCEEEE-cCEEEEeCeEEEcCCC-CCCCCCCC
Q 008860 151 YGTEPQHDWS-TLIANKNAELQRLTGIYKNILINAGITLIEGRGKIVDPHTVDV-DGKLYSARHILISVGG-RPFIPDIP 227 (551)
Q Consensus 151 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~i~~~~v~v-~g~~~~~d~lviAtG~-~p~~p~i~ 227 (551)
.+.++ .+.. ...+.+.+.|+++..+... ...+.+ +.....||+||||||+ .|+.+++|
T Consensus 476 -----~~rlp~~~~~-----------~~~~~l~~~gv~~~~~~~v---~~~v~~~~l~~~~ydavvlAtGa~~~~~l~ip 536 (752)
T PRK12778 476 -----EFRLPKKIVD-----------VEIENLKKLGVKFETDVIV---GKTITIEELEEEGFKGIFIASGAGLPNFMNIP 536 (752)
T ss_pred -----CCCCCHHHHH-----------HHHHHHHHCCCEEECCCEE---CCcCCHHHHhhcCCCEEEEeCCCCCCCCCCCC
Confidence 11111 1111 1123456679999876432 233334 2345679999999998 58888999
Q ss_pred CCC--ceecchhhhcC--------------CCCCCeEEEEcCcHHHHHHHHHHHhCCCe-EEEEeecCc-cCCCCCHHHH
Q 008860 228 GSE--YAIDSDAALDL--------------PSKPEKIAIVGGGYIALEFAGIFSGLTSE-VHVFIRQKK-VLRGFDEDIR 289 (551)
Q Consensus 228 g~~--~~~~~~~~~~~--------------~~~~~~vvViG~G~~g~e~a~~l~~~g~~-Vtlv~~~~~-~l~~~~~~~~ 289 (551)
|.+ .+++..+++.. ...+++|+|||+|++|+|+|..+.++|.+ |+++.+.+. .++....+
T Consensus 537 G~~~~gV~~~~~~l~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~~~r~Ga~~Vtlv~r~~~~~~~~~~~e-- 614 (752)
T PRK12778 537 GENSNGVMSSNEYLTRVNLMDAASPDSDTPIKFGKKVAVVGGGNTAMDSARTAKRLGAERVTIVYRRSEEEMPARLEE-- 614 (752)
T ss_pred CCCCCCcEEHHHHHHHHhhcccccccccCcccCCCcEEEECCcHHHHHHHHHHHHcCCCeEEEeeecCcccCCCCHHH--
Confidence 865 45655554321 12468999999999999999999999997 999998754 22322111
Q ss_pred HHHHHHHHhcCcEEEcCcccEEEEEcCCc-eEEEEEC---------CC-----------eEEEeeEEEEecCcCCCCCCC
Q 008860 290 DFVAEQMSLRGIEFHTEESPQAILKSTDG-SLSVKTN---------KG-----------TVDGFSHVMFATGRRPNTKNL 348 (551)
Q Consensus 290 ~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~-~~~V~~~---------~G-----------~~i~~d~vi~a~G~~p~~~~l 348 (551)
.+.+++.||++++++.+.++..++++ ...|.+. +| .++++|.||+|+|+.|+..+
T Consensus 615 ---~~~~~~~GV~i~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~G~~~~~~~~g~~~~i~~D~Vi~A~G~~p~~~l- 690 (752)
T PRK12778 615 ---VKHAKEEGIEFLTLHNPIEYLADEKGWVKQVVLQKMELGEPDASGRRRPVAIPGSTFTVDVDLVIVSVGVSPNPLV- 690 (752)
T ss_pred ---HHHHHHcCCEEEecCcceEEEECCCCEEEEEEEEEEEecCcCCCCCCCceecCCCeEEEECCEEEECcCCCCCccc-
Confidence 23467889999999999999765544 2233331 22 25899999999999999875
Q ss_pred Cccc-cCeeecCCCCeEeCCCCCCCCCcEEEeCcCCCCCCChHHHHHhHHHHHHHHc
Q 008860 349 GLEK-VGVKMTKNGAIEVDEYSGTAVPSIWAVGDVTDRINLTPVALMEGGALAKTLF 404 (551)
Q Consensus 349 ~l~~-~gl~~~~~G~i~vd~~~~t~~~~vya~GD~~~~~~~~~~A~~~g~~aa~~i~ 404 (551)
+.. .+++++++|+|.||++++|+.|+|||+|||+..+.++..|+.||+.||.+|.
T Consensus 691 -~~~~~gl~~~~~G~i~vd~~~~Ts~~gVfA~GD~~~g~~~vv~Av~~G~~AA~~I~ 746 (752)
T PRK12778 691 -PSSIPGLELNRKGTIVVDEEMQSSIPGIYAGGDIVRGGATVILAMGDGKRAAAAID 746 (752)
T ss_pred -cccccCceECCCCCEEeCCCCCCCCCCEEEeCCccCCcHHHHHHHHHHHHHHHHHH
Confidence 333 4788888899999999999999999999999888888999999999999985
|
|
| >PRK12770 putative glutamate synthase subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.5e-30 Score=262.55 Aligned_cols=278 Identities=22% Similarity=0.285 Sum_probs=197.0
Q ss_pred CccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhhccCCCccc
Q 008860 72 DFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDESNGFGWKY 151 (551)
Q Consensus 72 ~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~~ 151 (551)
..+|+|||+|++|+++|..|++.|++|++||+ ...+||..... ++
T Consensus 18 ~~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~---------~~~~gg~~~~~--~~------------------------ 62 (352)
T PRK12770 18 GKKVAIIGAGPAGLAAAGYLACLGYEVHVYDK---------LPEPGGLMLFG--IP------------------------ 62 (352)
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCcEEEEeC---------CCCCCceeeec--Cc------------------------
Confidence 36899999999999999999999999999993 34566653210 00
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEeEEEEec-C------CE--E---EEcCEEEEeCeEEEcCCC
Q 008860 152 GTEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIEGRGKIVD-P------HT--V---DVDGKLYSARHILISVGG 219 (551)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~i~-~------~~--v---~v~g~~~~~d~lviAtG~ 219 (551)
....+.+. +.... ..+.+.+++++.+.....+ . .. . ..++..+.||+||||||+
T Consensus 63 --~~~~~~~~-----------~~~~~-~~l~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~lviAtGs 128 (352)
T PRK12770 63 --EFRIPIER-----------VREGV-KELEEAGVVFHTRTKVCCGEPLHEEEGDEFVERIVSLEELVKKYDAVLIATGT 128 (352)
T ss_pred --ccccCHHH-----------HHHHH-HHHHhCCeEEecCcEEeeccccccccccccccccCCHHHHHhhCCEEEEEeCC
Confidence 00001111 11111 1234458888777433221 1 00 1 112224689999999999
Q ss_pred -CCCCCCCCCCC--ceecchhhh-----------cCCC----CCCeEEEEcCcHHHHHHHHHHHhCCCe-EEEEeecCcc
Q 008860 220 -RPFIPDIPGSE--YAIDSDAAL-----------DLPS----KPEKIAIVGGGYIALEFAGIFSGLTSE-VHVFIRQKKV 280 (551)
Q Consensus 220 -~p~~p~i~g~~--~~~~~~~~~-----------~~~~----~~~~vvViG~G~~g~e~a~~l~~~g~~-Vtlv~~~~~~ 280 (551)
.|..|++||.+ .+++..+.. .... .+++++|||+|++|+|+|..|.+.|.+ |+++++.+..
T Consensus 129 ~~~~~~~ipg~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~~~~ 208 (352)
T PRK12770 129 WKSRKLGIPGEDLPGVYSALEYLFRIRAAKLGYLPWEKVPPVEGKKVVVVGAGLTAVDAALEAVLLGAEKVYLAYRRTIN 208 (352)
T ss_pred CCCCcCCCCCccccCceeHHHHHHHhhhccccccccccccccCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeecchh
Confidence 57888899864 244432221 1111 147999999999999999999999987 9999987642
Q ss_pred CCCCCHHHHHHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEE--------------------CCCeEEEeeEEEEecC
Q 008860 281 LRGFDEDIRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKT--------------------NKGTVDGFSHVMFATG 340 (551)
Q Consensus 281 l~~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~--------------------~~G~~i~~d~vi~a~G 340 (551)
.. .......+.|+++||++++++.+.+++.++ +...|++ .+++++++|.||+++|
T Consensus 209 ~~----~~~~~~~~~l~~~gi~i~~~~~v~~i~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~D~vi~a~G 283 (352)
T PRK12770 209 EA----PAGKYEIERLIARGVEFLELVTPVRIIGEG-RVEGVELAKMRLGEPDESGRPRPVPIPGSEFVLEADTVVFAIG 283 (352)
T ss_pred hC----CCCHHHHHHHHHcCCEEeeccCceeeecCC-cEeEEEEEEEEecCcCcccCcCceecCCCeEEEECCEEEECcc
Confidence 11 112344566899999999999999997653 2223332 1234799999999999
Q ss_pred cCCCCCCCCccc-cCeeecCCCCeEeCCCCCCCCCcEEEeCcCCCCCCChHHHHHhHHHHHHHHcC
Q 008860 341 RRPNTKNLGLEK-VGVKMTKNGAIEVDEYSGTAVPSIWAVGDVTDRINLTPVALMEGGALAKTLFQ 405 (551)
Q Consensus 341 ~~p~~~~l~l~~-~gl~~~~~G~i~vd~~~~t~~~~vya~GD~~~~~~~~~~A~~~g~~aa~~i~g 405 (551)
++|++.+ ... .+++++++|++.||++++|+.|+|||+|||+..+.....|+.||+.+|.+|..
T Consensus 284 ~~p~~~l--~~~~~g~~~~~~g~i~vd~~~~t~~~~vyaiGD~~~~~~~~~~A~~~g~~aa~~i~~ 347 (352)
T PRK12770 284 EIPTPPF--AKECLGIELNRKGEIVVDEKHMTSREGVFAAGDVVTGPSKIGKAIKSGLRAAQSIHE 347 (352)
T ss_pred cCCCchh--hhcccCceecCCCcEeeCCCcccCCCCEEEEcccccCcchHHHHHHHHHHHHHHHHH
Confidence 9999876 333 78888888999999999999999999999999888899999999999999863
|
|
| >TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit | Back alignment and domain information |
|---|
Probab=99.97 E-value=8e-30 Score=281.86 Aligned_cols=273 Identities=21% Similarity=0.308 Sum_probs=197.8
Q ss_pred CCccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhhccCCCcc
Q 008860 71 YDFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDESNGFGWK 150 (551)
Q Consensus 71 ~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~ 150 (551)
..+||+||||||||++||+.|++.|++|+|+|+ ...+||.+.+. +|. |
T Consensus 536 ~~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek---------~~~lGG~l~~~--IP~------------------~--- 583 (1012)
T TIGR03315 536 SAHKVAVIGAGPAGLSAGYFLARAGHPVTVFEK---------KEKPGGVVKNI--IPE------------------F--- 583 (1012)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEec---------ccccCceeeec--ccc------------------c---
Confidence 358999999999999999999999999999993 45678886431 231 0
Q ss_pred cCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEeEEEEecCCEEEE-cCEEEEeCeEEEcCCCCC-CCCCCCC
Q 008860 151 YGTEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIEGRGKIVDPHTVDV-DGKLYSARHILISVGGRP-FIPDIPG 228 (551)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~i~~~~v~v-~g~~~~~d~lviAtG~~p-~~p~i~g 228 (551)
... .+... ...+.+.+.||+++.+.. ..+.+ +.+...||+|+||||+.+ ..++++|
T Consensus 584 -----rlp-~e~l~-----------~~ie~l~~~GVe~~~g~~-----~d~~ve~l~~~gYDaVIIATGA~~~~~l~I~G 641 (1012)
T TIGR03315 584 -----RIS-AESIQ-----------KDIELVKFHGVEFKYGCS-----PDLTVAELKNQGYKYVILAIGAWKHGPLRLEG 641 (1012)
T ss_pred -----CCC-HHHHH-----------HHHHHHHhcCcEEEEecc-----cceEhhhhhcccccEEEECCCCCCCCCCCcCC
Confidence 000 11111 112345566999887631 11223 223457999999999875 4456777
Q ss_pred CC-ceecchhhhc-------CCCCCCeEEEEcCcHHHHHHHHHHHhC-CC-eEEEEeecC-ccCCCCCHHHHHHHHHHHH
Q 008860 229 SE-YAIDSDAALD-------LPSKPEKIAIVGGGYIALEFAGIFSGL-TS-EVHVFIRQK-KVLRGFDEDIRDFVAEQMS 297 (551)
Q Consensus 229 ~~-~~~~~~~~~~-------~~~~~~~vvViG~G~~g~e~a~~l~~~-g~-~Vtlv~~~~-~~l~~~~~~~~~~l~~~l~ 297 (551)
.. .+++..+++. ....+++|+|||+|++|+|+|..+.+. |. +|+++.+.. ..++..+++ +.+.+
T Consensus 642 ~~~~v~~avefL~~~~~~~~~~~~GK~VVVIGGGnvAmD~Ar~a~Rl~Ga~kVtLVyRr~~~~Mpa~~eE----l~~al- 716 (1012)
T TIGR03315 642 GGERVLKSLEFLRAFKEGPTINPLGKHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRTKRYMPASREE----LEEAL- 716 (1012)
T ss_pred CCcceeeHHHHHHHhhccccccccCCeEEEECCCHHHHHHHHHHHHhCCCceEEEEEccCccccccCHHH----HHHHH-
Confidence 43 3444433332 123589999999999999999998876 75 899999876 334444433 33333
Q ss_pred hcCcEEEcCcccEEEEEcCCceEEEE---------------ECCCe--EEEeeEEEEecCcCCCCCCCCccccCeeecCC
Q 008860 298 LRGIEFHTEESPQAILKSTDGSLSVK---------------TNKGT--VDGFSHVMFATGRRPNTKNLGLEKVGVKMTKN 360 (551)
Q Consensus 298 ~~Gv~i~~~~~v~~i~~~~~~~~~V~---------------~~~G~--~i~~d~vi~a~G~~p~~~~l~l~~~gl~~~~~ 360 (551)
+.||+++++..+.++. +++ +.+. ..+|+ ++++|.||+|+|..|++++ ++..+++++++
T Consensus 717 eeGVe~~~~~~p~~I~--~g~-l~v~~~~l~~~d~sGr~~~v~~Gee~~I~aD~VIvAiG~~Pnt~l--le~~GL~ld~~ 791 (1012)
T TIGR03315 717 EDGVDFKELLSPESFE--DGT-LTCEVMKLGEPDASGRRRPVGTGETVDLPADTVIAAVGEQVDTDL--LQKNGIPLDEY 791 (1012)
T ss_pred HcCCEEEeCCceEEEE--CCe-EEEEEEEeecccCCCceeeecCCCeEEEEeCEEEEecCCcCChHH--HHhcCcccCCC
Confidence 5799999998888886 222 2211 11233 6899999999999999987 57788999999
Q ss_pred CCeEeCCC-CCCCCCcEEEeCcCCCCCCChHHHHHhHHHHHHHHcCCC
Q 008860 361 GAIEVDEY-SGTAVPSIWAVGDVTDRINLTPVALMEGGALAKTLFQAE 407 (551)
Q Consensus 361 G~i~vd~~-~~t~~~~vya~GD~~~~~~~~~~A~~~g~~aa~~i~g~~ 407 (551)
|++.||++ ++|+.|+|||+|||+..+.++..|+.||+.||.+|++..
T Consensus 792 G~I~VD~~~~~Ts~pgVFAaGD~a~GP~tVv~AIaqGr~AA~nIl~~~ 839 (1012)
T TIGR03315 792 GWPVVNQATGETNITNVFVIGDANRGPATIVEAIADGRKAANAILSRE 839 (1012)
T ss_pred CCEEeCCCCCccCCCCEEEEeCcCCCccHHHHHHHHHHHHHHHHhccc
Confidence 99999986 899999999999999888889999999999999998653
|
Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase. |
| >PRK12810 gltD glutamate synthase subunit beta; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.3e-30 Score=269.48 Aligned_cols=281 Identities=19% Similarity=0.249 Sum_probs=197.6
Q ss_pred CCccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhhccCCCcc
Q 008860 71 YDFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDESNGFGWK 150 (551)
Q Consensus 71 ~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~ 150 (551)
..+||+|||||+||+++|..|++.|++|+|||+ ...+||.+.. | +|. +
T Consensus 142 ~~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~---------~~~~GG~l~~-g-ip~--------------------~- 189 (471)
T PRK12810 142 TGKKVAVVGSGPAGLAAADQLARAGHKVTVFER---------ADRIGGLLRY-G-IPD--------------------F- 189 (471)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCCCcEEEEec---------CCCCCceeee-c-CCc--------------------c-
Confidence 357999999999999999999999999999993 4456776431 1 220 0
Q ss_pred cCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEeEEEEecCCEEEEcCEEEEeCeEEEcCCCC-CCCCCCCCC
Q 008860 151 YGTEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIEGRGKIVDPHTVDVDGKLYSARHILISVGGR-PFIPDIPGS 229 (551)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~i~~~~v~v~g~~~~~d~lviAtG~~-p~~p~i~g~ 229 (551)
... ..+. ....+.+.+.|++++.++....+ +..+.....||+|++|||+. +..+++||.
T Consensus 190 -----~~~-~~~~-----------~~~~~~~~~~gv~~~~~~~v~~~---~~~~~~~~~~d~vvlAtGa~~~~~l~ipG~ 249 (471)
T PRK12810 190 -----KLE-KEVI-----------DRRIELMEAEGIEFRTNVEVGKD---ITAEELLAEYDAVFLGTGAYKPRDLGIPGR 249 (471)
T ss_pred -----cCC-HHHH-----------HHHHHHHHhCCcEEEeCCEECCc---CCHHHHHhhCCEEEEecCCCCCCcCCCCCc
Confidence 000 1111 11123456679999887543221 11122235799999999997 777888886
Q ss_pred C--ceecchhhh--------c------CCCCCCeEEEEcCcHHHHHHHHHHHhCCC-eEEEEeecCccCCCC-CH----H
Q 008860 230 E--YAIDSDAAL--------D------LPSKPEKIAIVGGGYIALEFAGIFSGLTS-EVHVFIRQKKVLRGF-DE----D 287 (551)
Q Consensus 230 ~--~~~~~~~~~--------~------~~~~~~~vvViG~G~~g~e~a~~l~~~g~-~Vtlv~~~~~~l~~~-~~----~ 287 (551)
+ .+++..+++ . ....+++|+|||+|++|+|+|..+.+.|. +|++++..+...... +. .
T Consensus 250 ~~~gV~~~~~~l~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~g~e~A~~~~~~ga~~Vt~~~~~~~~~~~~~~~~~~~~ 329 (471)
T PRK12810 250 DLDGVHFAMDFLIQNTRRVLGDETEPFISAKGKHVVVIGGGDTGMDCVGTAIRQGAKSVTQRDIMPMPPSRRNKNNPWPY 329 (471)
T ss_pred cCCCcEEHHHHHHHHHhhhccccccccccCCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEccccCCCccccccccCCcc
Confidence 4 344322211 0 12357899999999999999998888886 788666544221111 00 0
Q ss_pred HH-HHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEE-----CCC---------eEEEeeEEEEecCcCCCCCCCCccc
Q 008860 288 IR-DFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKT-----NKG---------TVDGFSHVMFATGRRPNTKNLGLEK 352 (551)
Q Consensus 288 ~~-~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~-----~~G---------~~i~~d~vi~a~G~~p~~~~l~l~~ 352 (551)
+. ....+.+++.||++++++.+++|..+++....|++ .+| +++++|.||+|+|..|+...+ ++.
T Consensus 330 ~~~~~~~~~~~~~GV~i~~~~~~~~i~~~~g~v~~V~~~~~~~~~g~~~~~~g~~~~i~~D~VI~A~G~~p~~~~l-~~~ 408 (471)
T PRK12810 330 WPMKLEVSNAHEEGVEREFNVQTKEFEGENGKVTGVKVVRTELGEGDFEPVEGSEFVLPADLVLLAMGFTGPEAGL-LAQ 408 (471)
T ss_pred cchHHHHHHHHHcCCeEEeccCceEEEccCCEEEEEEEEEEEecCCCccccCCceEEEECCEEEECcCcCCCchhh-ccc
Confidence 11 11345677889999999999999764444333332 222 479999999999999986422 677
Q ss_pred cCeeecCCCCeEeC-CCCCCCCCcEEEeCcCCCCCCChHHHHHhHHHHHHHHc
Q 008860 353 VGVKMTKNGAIEVD-EYSGTAVPSIWAVGDVTDRINLTPVALMEGGALAKTLF 404 (551)
Q Consensus 353 ~gl~~~~~G~i~vd-~~~~t~~~~vya~GD~~~~~~~~~~A~~~g~~aa~~i~ 404 (551)
.+++++++|.+.+| ++++|+.|+|||+|||+..+.++..|+.||+.||.+|.
T Consensus 409 ~gl~~~~~g~i~vd~~~~~Ts~~gVfa~GD~~~g~~~~~~Av~~G~~AA~~i~ 461 (471)
T PRK12810 409 FGVELDERGRVAAPDNAYQTSNPKVFAAGDMRRGQSLVVWAIAEGRQAARAID 461 (471)
T ss_pred cCcccCCCCCEEeCCCcccCCCCCEEEccccCCCchhHHHHHHHHHHHHHHHH
Confidence 78889989999998 79999999999999999988788899999999999875
|
|
| >PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-29 Score=283.60 Aligned_cols=276 Identities=20% Similarity=0.267 Sum_probs=201.3
Q ss_pred CCccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhhccCCCcc
Q 008860 71 YDFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDESNGFGWK 150 (551)
Q Consensus 71 ~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~ 150 (551)
...+|+|||||||||+||..|++.|++|+|||+ ...+||... +| +|. +
T Consensus 305 ~gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~---------~~~~GG~l~-yG-IP~--------------------~- 352 (944)
T PRK12779 305 VKPPIAVVGSGPSGLINAYLLAVEGFPVTVFEA---------FHDLGGVLR-YG-IPE--------------------F- 352 (944)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEee---------CCCCCceEE-cc-CCC--------------------C-
Confidence 358999999999999999999999999999993 456888753 22 331 0
Q ss_pred cCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEeEEEEecCCEEEE-cCEEEEeCeEEEcCCC-CCCCCCCCC
Q 008860 151 YGTEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIEGRGKIVDPHTVDV-DGKLYSARHILISVGG-RPFIPDIPG 228 (551)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~i~~~~v~v-~g~~~~~d~lviAtG~-~p~~p~i~g 228 (551)
. ...++..+ ..+.+++.|+++..+... ...+.+ +.....||+|+||||+ .|+.+++||
T Consensus 353 -----r-lp~~vi~~-----------~i~~l~~~Gv~f~~n~~v---G~dit~~~l~~~~yDAV~LAtGA~~pr~l~IpG 412 (944)
T PRK12779 353 -----R-LPNQLIDD-----------VVEKIKLLGGRFVKNFVV---GKTATLEDLKAAGFWKIFVGTGAGLPTFMNVPG 412 (944)
T ss_pred -----c-ChHHHHHH-----------HHHHHHhhcCeEEEeEEe---ccEEeHHHhccccCCEEEEeCCCCCCCcCCCCC
Confidence 0 01122211 123455669999887532 133444 3344679999999998 588889998
Q ss_pred CC--ceecchhhhcC----------------CCCCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCc-cCCCCCHHHH
Q 008860 229 SE--YAIDSDAALDL----------------PSKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKK-VLRGFDEDIR 289 (551)
Q Consensus 229 ~~--~~~~~~~~~~~----------------~~~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~-~l~~~~~~~~ 289 (551)
.+ .+++..+++.. ...+++|+|||+|.+|+++|..+.++|++|+++.+.+. .++. ..
T Consensus 413 ~dl~GV~~a~dfL~~~~~~~~~~~~~~~~~~~~~Gk~VvVIGGG~tA~D~A~ta~R~Ga~Vtlv~rr~~~~mpa----~~ 488 (944)
T PRK12779 413 EHLLGVMSANEFLTRVNLMRGLDDDYETPLPEVKGKEVFVIGGGNTAMDAARTAKRLGGNVTIVYRRTKSEMPA----RV 488 (944)
T ss_pred CcCcCcEEHHHHHHHHHhhccccccccccccccCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEecCcccccc----cH
Confidence 64 45555554421 11468999999999999999999999999999998753 2222 22
Q ss_pred HHHHHHHHhcCcEEEcCcccEEEEEcCC-c-eEEEEE---------C--------CC--eEEEeeEEEEecCcCCCCCCC
Q 008860 290 DFVAEQMSLRGIEFHTEESPQAILKSTD-G-SLSVKT---------N--------KG--TVDGFSHVMFATGRRPNTKNL 348 (551)
Q Consensus 290 ~~l~~~l~~~Gv~i~~~~~v~~i~~~~~-~-~~~V~~---------~--------~G--~~i~~d~vi~a~G~~p~~~~l 348 (551)
..+.+ ..+.||++++++.++++..+++ + +..+.+ . +| .+++||.||+|+|+.|+..+.
T Consensus 489 ~e~~~-a~eeGV~~~~~~~p~~i~~d~~~~~V~~v~~~~~~l~~~d~~Gr~~~~~~G~e~~i~aD~VI~AiG~~p~~~l~ 567 (944)
T PRK12779 489 EELHH-ALEEGINLAVLRAPREFIGDDHTHFVTHALLDVNELGEPDKSGRRSPKPTGEIERVPVDLVIMALGNTANPIMK 567 (944)
T ss_pred HHHHH-HHHCCCEEEeCcceEEEEecCCCCEEEEEEEEEEEeccccCcCceeeecCCceEEEECCEEEEcCCcCCChhhh
Confidence 23333 3467999999999999976532 2 222221 1 22 358999999999999987532
Q ss_pred CccccCeeecCCCCeEeCC-CCCCCCCcEEEeCcCCCCCCChHHHHHhHHHHHHHHc
Q 008860 349 GLEKVGVKMTKNGAIEVDE-YSGTAVPSIWAVGDVTDRINLTPVALMEGGALAKTLF 404 (551)
Q Consensus 349 ~l~~~gl~~~~~G~i~vd~-~~~t~~~~vya~GD~~~~~~~~~~A~~~g~~aa~~i~ 404 (551)
....+++++++|.|.||+ +++|+.|+|||+|||+.++.++..|+.+|+.||.+|.
T Consensus 568 -~~~~gle~~~~G~I~vd~~~~~Ts~pgVFAaGD~~~G~~~vv~Ai~eGr~AA~~I~ 623 (944)
T PRK12779 568 -DAEPGLKTNKWGTIEVEKGSQRTSIKGVYSGGDAARGGSTAIRAAGDGQAAAKEIV 623 (944)
T ss_pred -hcccCceECCCCCEEECCCCCccCCCCEEEEEcCCCChHHHHHHHHHHHHHHHHHH
Confidence 344578889999999997 5899999999999999988888999999999999885
|
|
| >PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.6e-29 Score=272.92 Aligned_cols=274 Identities=22% Similarity=0.314 Sum_probs=198.1
Q ss_pred CCccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhhccCCCcc
Q 008860 71 YDFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDESNGFGWK 150 (551)
Q Consensus 71 ~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~ 150 (551)
..++|+|||||+||+++|..|++.|++|+|||+ ...+||.+.. | +|. | .
T Consensus 192 ~~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~---------~~~~GG~l~~-g-ip~------------------~--~ 240 (652)
T PRK12814 192 SGKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDA---------NEQAGGMMRY-G-IPR------------------F--R 240 (652)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCcEEEEec---------CCCCCceeee-c-CCC------------------C--C
Confidence 357999999999999999999999999999993 4557887532 1 110 0 0
Q ss_pred cCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEeEEEEecCCEEEEcCEEEEeCeEEEcCCCCC-CCCCCCCC
Q 008860 151 YGTEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIEGRGKIVDPHTVDVDGKLYSARHILISVGGRP-FIPDIPGS 229 (551)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~i~~~~v~v~g~~~~~d~lviAtG~~p-~~p~i~g~ 229 (551)
....+.. ...+.+.+.|+++..+..... .+.++.....||+|++|||+.+ ..+++||.
T Consensus 241 -------~~~~~~~-----------~~~~~l~~~Gv~i~~~~~v~~---dv~~~~~~~~~DaVilAtGa~~~~~~~ipG~ 299 (652)
T PRK12814 241 -------LPESVID-----------ADIAPLRAMGAEFRFNTVFGR---DITLEELQKEFDAVLLAVGAQKASKMGIPGE 299 (652)
T ss_pred -------CCHHHHH-----------HHHHHHHHcCCEEEeCCcccC---ccCHHHHHhhcCEEEEEcCCCCCCCCCCCCc
Confidence 0111111 112334566898877653211 1222222235999999999985 46778886
Q ss_pred C--ceecchhhhc------CCCCCCeEEEEcCcHHHHHHHHHHHhCCC-eEEEEeecCc-cCCCCCHHHHHHHHHHHHhc
Q 008860 230 E--YAIDSDAALD------LPSKPEKIAIVGGGYIALEFAGIFSGLTS-EVHVFIRQKK-VLRGFDEDIRDFVAEQMSLR 299 (551)
Q Consensus 230 ~--~~~~~~~~~~------~~~~~~~vvViG~G~~g~e~a~~l~~~g~-~Vtlv~~~~~-~l~~~~~~~~~~l~~~l~~~ 299 (551)
+ .+++..+++. ....+++|+|||+|++|+|+|..+.++|. +|+++.+.+. .++..+.+ +.+. .+.
T Consensus 300 ~~~gv~~~~~~l~~~~~~~~~~~gk~VvVIGgG~~a~e~A~~l~~~Ga~~Vtlv~r~~~~~mpa~~~e----i~~a-~~e 374 (652)
T PRK12814 300 ELPGVISGIDFLRNVALGTALHPGKKVVVIGGGNTAIDAARTALRLGAESVTILYRRTREEMPANRAE----IEEA-LAE 374 (652)
T ss_pred CcCCcEeHHHHHHHhhcCCcccCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecCcccCCCCHHH----HHHH-HHc
Confidence 4 3444444432 12357899999999999999999999986 6999998764 34433333 3333 357
Q ss_pred CcEEEcCcccEEEEEcCCceEEEE---EC---------------CCe--EEEeeEEEEecCcCCCCCCCCccccCeeecC
Q 008860 300 GIEFHTEESPQAILKSTDGSLSVK---TN---------------KGT--VDGFSHVMFATGRRPNTKNLGLEKVGVKMTK 359 (551)
Q Consensus 300 Gv~i~~~~~v~~i~~~~~~~~~V~---~~---------------~G~--~i~~d~vi~a~G~~p~~~~l~l~~~gl~~~~ 359 (551)
||++++++.+.++..++++ +.++ +. +|+ .+++|.||+|+|..|++.+ ++..+++++.
T Consensus 375 GV~i~~~~~~~~i~~~~~~-~~v~~~~~~~~~~d~~G~~~~~~~~g~~~~i~~D~VI~AiG~~p~~~l--l~~~gl~~~~ 451 (652)
T PRK12814 375 GVSLRELAAPVSIERSEGG-LELTAIKMQQGEPDESGRRRPVPVEGSEFTLQADTVISAIGQQVDPPI--AEAAGIGTSR 451 (652)
T ss_pred CCcEEeccCcEEEEecCCe-EEEEEEEEEecccCCCCCCcceecCCceEEEECCEEEECCCCcCCccc--ccccCccccC
Confidence 9999999999999875544 2221 11 222 5899999999999999987 5677888888
Q ss_pred CCCeEeCC-CCCCCCCcEEEeCcCCCCCCChHHHHHhHHHHHHHHc
Q 008860 360 NGAIEVDE-YSGTAVPSIWAVGDVTDRINLTPVALMEGGALAKTLF 404 (551)
Q Consensus 360 ~G~i~vd~-~~~t~~~~vya~GD~~~~~~~~~~A~~~g~~aa~~i~ 404 (551)
+|+|.||+ +++|+.|+|||+||++..+.++..|+.||+.||.+|.
T Consensus 452 ~G~I~vd~~~~~Ts~pgVfA~GDv~~g~~~v~~Ai~~G~~AA~~I~ 497 (652)
T PRK12814 452 NGTVKVDPETLQTSVAGVFAGGDCVTGADIAINAVEQGKRAAHAID 497 (652)
T ss_pred CCcEeeCCCCCcCCCCCEEEcCCcCCCchHHHHHHHHHHHHHHHHH
Confidence 89999997 6899999999999999888888999999999999874
|
|
| >PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.3e-28 Score=277.84 Aligned_cols=277 Identities=21% Similarity=0.288 Sum_probs=197.5
Q ss_pred CCccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhhccCCCcc
Q 008860 71 YDFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDESNGFGWK 150 (551)
Q Consensus 71 ~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~ 150 (551)
..+||+|||||||||+||..|++.|++|+|+|+ ...+||... .| +|. |
T Consensus 429 ~~~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~---------~~~~GG~l~-~g-ip~------------------~--- 476 (1006)
T PRK12775 429 KLGKVAICGSGPAGLAAAADLVKYGVDVTVYEA---------LHVVGGVLQ-YG-IPS------------------F--- 476 (1006)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEec---------CCCCcceee-cc-CCc------------------c---
Confidence 357999999999999999999999999999993 445676532 11 221 0
Q ss_pred cCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEeEEEEecCCEEEEcC--EEEEeCeEEEcCCCC-CCCCCCC
Q 008860 151 YGTEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIEGRGKIVDPHTVDVDG--KLYSARHILISVGGR-PFIPDIP 227 (551)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~i~~~~v~v~g--~~~~~d~lviAtG~~-p~~p~i~ 227 (551)
....++.. ...+.+.+.||++..+... + ..+.++. ....||+||||||+. |+.+++|
T Consensus 477 ------rl~~e~~~-----------~~~~~l~~~Gv~~~~~~~v--g-~~~~~~~l~~~~~yDaViIATGa~~pr~l~Ip 536 (1006)
T PRK12775 477 ------RLPRDIID-----------REVQRLVDIGVKIETNKVI--G-KTFTVPQLMNDKGFDAVFLGVGAGAPTFLGIP 536 (1006)
T ss_pred ------CCCHHHHH-----------HHHHHHHHCCCEEEeCCcc--C-CccCHHHHhhccCCCEEEEecCCCCCCCCCCC
Confidence 00111111 1223456679999887432 1 2222211 134699999999984 8889999
Q ss_pred CCC--ceecchhhhcC---------------CCCCCeEEEEcCcHHHHHHHHHHHhCCC-eEEEEeecCccCCCCCHHHH
Q 008860 228 GSE--YAIDSDAALDL---------------PSKPEKIAIVGGGYIALEFAGIFSGLTS-EVHVFIRQKKVLRGFDEDIR 289 (551)
Q Consensus 228 g~~--~~~~~~~~~~~---------------~~~~~~vvViG~G~~g~e~a~~l~~~g~-~Vtlv~~~~~~l~~~~~~~~ 289 (551)
|.+ .+++..+++.. ...+++|+|||+|++|+++|..+.++|. .|+++.+....- .+..
T Consensus 537 G~~l~gV~~a~~fL~~~~~~~~~~~~~~~~~~~~Gk~VvVIGgG~tA~D~A~~a~rlGa~~Vtiv~rr~~~e--m~a~-- 612 (1006)
T PRK12775 537 GEFAGQVYSANEFLTRVNLMGGDKFPFLDTPISLGKSVVVIGAGNTAMDCLRVAKRLGAPTVRCVYRRSEAE--APAR-- 612 (1006)
T ss_pred CcCCCCcEEHHHHHHHHHhcCccccccccCCccCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeecCccc--CCCC--
Confidence 953 45655544321 1257899999999999999999999998 488887754311 1111
Q ss_pred HHHHHHHHhcCcEEEcCcccEEEEEcCCc-eEEEEEC-----------------CC--eEEEeeEEEEecCcCCCCCCCC
Q 008860 290 DFVAEQMSLRGIEFHTEESPQAILKSTDG-SLSVKTN-----------------KG--TVDGFSHVMFATGRRPNTKNLG 349 (551)
Q Consensus 290 ~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~-~~~V~~~-----------------~G--~~i~~d~vi~a~G~~p~~~~l~ 349 (551)
..-.+.+++.||++++++.+.++..++++ +..|++. +| .++++|.||+|+|..|+..++
T Consensus 613 ~~e~~~a~eeGI~~~~~~~p~~i~~~~~G~v~~v~~~~~~l~~~d~~Gr~~~~~~g~~~~i~~D~Vi~AiG~~p~~~~~- 691 (1006)
T PRK12775 613 IEEIRHAKEEGIDFFFLHSPVEIYVDAEGSVRGMKVEEMELGEPDEKGRRKPMPTGEFKDLECDTVIYALGTKANPIIT- 691 (1006)
T ss_pred HHHHHHHHhCCCEEEecCCcEEEEeCCCCeEEEEEEEEEEecccCCCCCccccCCCceEEEEcCEEEECCCcCCChhhh-
Confidence 11124577889999999999999765443 2233321 12 259999999999999998753
Q ss_pred ccccCeeecCCCCeEeCC-----CCCCCCCcEEEeCcCCCCCCChHHHHHhHHHHHHHHc
Q 008860 350 LEKVGVKMTKNGAIEVDE-----YSGTAVPSIWAVGDVTDRINLTPVALMEGGALAKTLF 404 (551)
Q Consensus 350 l~~~gl~~~~~G~i~vd~-----~~~t~~~~vya~GD~~~~~~~~~~A~~~g~~aa~~i~ 404 (551)
....++.++++|.|.+|+ +++||+|+|||+||++.++.++..|+.+|+.||.+|.
T Consensus 692 ~~~~gl~l~~~G~I~vd~~~v~~~~~Ts~pgVFAaGDv~~G~~~vv~Ai~~Gr~AA~~I~ 751 (1006)
T PRK12775 692 QSTPGLALNKWGNIAADDGKLESTQSTNLPGVFAGGDIVTGGATVILAMGAGRRAARSIA 751 (1006)
T ss_pred hccCCcccCCCCcEEeCCCccccCcCCCCCCEEEecCcCCCccHHHHHHHHHHHHHHHHH
Confidence 223478888889999996 7899999999999999988888999999999999874
|
|
| >TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.3e-28 Score=255.09 Aligned_cols=276 Identities=22% Similarity=0.315 Sum_probs=196.9
Q ss_pred CCccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhhccCCCcc
Q 008860 71 YDFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDESNGFGWK 150 (551)
Q Consensus 71 ~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~ 150 (551)
...+|+|||||++|+++|..|++.|++|+|+|+ ...+||.... | +|..
T Consensus 140 ~~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~---------~~~~gG~l~~-g-ip~~--------------------- 187 (467)
T TIGR01318 140 TGKRVAVIGAGPAGLACADILARAGVQVVVFDR---------HPEIGGLLTF-G-IPSF--------------------- 187 (467)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCeEEEEec---------CCCCCceeee-c-Cccc---------------------
Confidence 357999999999999999999999999999993 4557776432 2 2210
Q ss_pred cCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEeEEEEecCCEEEEcCEEEEeCeEEEcCCCCCC-CCCCCCC
Q 008860 151 YGTEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIEGRGKIVDPHTVDVDGKLYSARHILISVGGRPF-IPDIPGS 229 (551)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~i~~~~v~v~g~~~~~d~lviAtG~~p~-~p~i~g~ 229 (551)
..+ .++ .....+.+.+.|++++.+... + ..+.+++....||.||+|||+.+. .+++||.
T Consensus 188 -----~~~-~~~-----------~~~~~~~~~~~Gv~~~~~~~v--~-~~~~~~~~~~~~D~vilAtGa~~~~~~~i~g~ 247 (467)
T TIGR01318 188 -----KLD-KAV-----------LSRRREIFTAMGIEFHLNCEV--G-RDISLDDLLEDYDAVFLGVGTYRSMRGGLPGE 247 (467)
T ss_pred -----cCC-HHH-----------HHHHHHHHHHCCCEEECCCEe--C-CccCHHHHHhcCCEEEEEeCCCCCCcCCCCCc
Confidence 000 111 112234566779998776422 1 112222223479999999999874 4578885
Q ss_pred C--ceecchhh--------hcC---------CCCCCeEEEEcCcHHHHHHHHHHHhCCC-eEEEEeecCcc-CCCCCHHH
Q 008860 230 E--YAIDSDAA--------LDL---------PSKPEKIAIVGGGYIALEFAGIFSGLTS-EVHVFIRQKKV-LRGFDEDI 288 (551)
Q Consensus 230 ~--~~~~~~~~--------~~~---------~~~~~~vvViG~G~~g~e~a~~l~~~g~-~Vtlv~~~~~~-l~~~~~~~ 288 (551)
+ .+++..++ ..+ ....++++|||+|.+|++.|..+.++|. +||++.+.+.. ++..+.+
T Consensus 248 ~~~gV~~a~~~l~~~~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~a~~~Ga~~Vtvv~r~~~~~~~~~~~e- 326 (467)
T TIGR01318 248 DAPGVLQALPFLIANTRQLMGLPESPEEPLIDVEGKRVVVLGGGDTAMDCVRTAIRLGAASVTCAYRRDEANMPGSRRE- 326 (467)
T ss_pred CCCCcEEHHHHHHHHHHHhcCCCccccccccccCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEEecCcccCCCCHHH-
Confidence 4 23332111 111 1246899999999999999999999995 79999987653 3433322
Q ss_pred HHHHHHHHHhcCcEEEcCcccEEEEEcCCc-eEEEEEC---------CC-----------eEEEeeEEEEecCcCCCCCC
Q 008860 289 RDFVAEQMSLRGIEFHTEESPQAILKSTDG-SLSVKTN---------KG-----------TVDGFSHVMFATGRRPNTKN 347 (551)
Q Consensus 289 ~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~-~~~V~~~---------~G-----------~~i~~d~vi~a~G~~p~~~~ 347 (551)
.+.+++.||++++++.+.++..++++ ...|++. +| .++++|.||+|+|+.|+...
T Consensus 327 ----~~~~~~~GV~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~g~~~~i~~D~Vi~a~G~~p~~~~ 402 (467)
T TIGR01318 327 ----VANAREEGVEFLFNVQPVYIECDEDGRVTGVGLVRTALGEPDADGRRRPVPVAGSEFVLPADVVIMAFGFQPHAMP 402 (467)
T ss_pred ----HHHHHhcCCEEEecCCcEEEEECCCCeEEEEEEEEEEecccCCCCCccceecCCceEEEECCEEEECCcCCCCccc
Confidence 24567889999999999999765433 2223321 12 36899999999999998532
Q ss_pred CCccccCeeecCCCCeEeC----CCCCCCCCcEEEeCcCCCCCCChHHHHHhHHHHHHHHc
Q 008860 348 LGLEKVGVKMTKNGAIEVD----EYSGTAVPSIWAVGDVTDRINLTPVALMEGGALAKTLF 404 (551)
Q Consensus 348 l~l~~~gl~~~~~G~i~vd----~~~~t~~~~vya~GD~~~~~~~~~~A~~~g~~aa~~i~ 404 (551)
+ ++..+++++++|++.|| ++++|+.|+|||+|||+..+.++..|+.+|+.||.+|.
T Consensus 403 ~-~~~~gl~~~~~g~i~vd~~~~~~~~T~~~gVfa~GD~~~~~~~~~~Ai~~G~~aA~~i~ 462 (467)
T TIGR01318 403 W-LAGHGITLDSWGRIITGDVSYLPYQTTNPKIFAGGDAVRGADLVVTAVAEGRQAAQGIL 462 (467)
T ss_pred c-ccccCccCCCCCCEEeCCccccCccCCCCCEEEECCcCCCccHHHHHHHHHHHHHHHHH
Confidence 2 56778888888999999 68899999999999999988888899999999999985
|
This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli. |
| >PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed | Back alignment and domain information |
|---|
Probab=99.96 E-value=1e-27 Score=262.71 Aligned_cols=276 Identities=22% Similarity=0.337 Sum_probs=195.1
Q ss_pred CCccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhhccCCCcc
Q 008860 71 YDFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDESNGFGWK 150 (551)
Q Consensus 71 ~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~ 150 (551)
...+|+|||||||||++|..|++.|++|+|+|+ ...+||.+.+ | +|. +
T Consensus 326 ~~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~---------~~~~GG~l~~-g-ip~--------------------~- 373 (654)
T PRK12769 326 SDKRVAIIGAGPAGLACADVLARNGVAVTVYDR---------HPEIGGLLTF-G-IPA--------------------F- 373 (654)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEec---------CCCCCceeee-c-CCC--------------------c-
Confidence 357999999999999999999999999999993 4567777532 1 221 0
Q ss_pred cCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEeEEEEecCCEEEEcCEEEEeCeEEEcCCCCC-CCCCCCCC
Q 008860 151 YGTEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIEGRGKIVDPHTVDVDGKLYSARHILISVGGRP-FIPDIPGS 229 (551)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~i~~~~v~v~g~~~~~d~lviAtG~~p-~~p~i~g~ 229 (551)
..+ .++. ....+.+++.|+++..+.... ..+.+......||.|++|||+.. ..++++|.
T Consensus 374 -----~l~-~~~~-----------~~~~~~~~~~Gv~~~~~~~v~---~~i~~~~~~~~~DavilAtGa~~~~~l~i~g~ 433 (654)
T PRK12769 374 -----KLD-KSLL-----------ARRREIFSAMGIEFELNCEVG---KDISLESLLEDYDAVFVGVGTYRSMKAGLPNE 433 (654)
T ss_pred -----cCC-HHHH-----------HHHHHHHHHCCeEEECCCEeC---CcCCHHHHHhcCCEEEEeCCCCCCCCCCCCCC
Confidence 000 1111 112234566789887754221 11122111246999999999864 45667775
Q ss_pred C--ceecch--------hhhcC---------CCCCCeEEEEcCcHHHHHHHHHHHhCCC-eEEEEeecCcc-CCCCCHHH
Q 008860 230 E--YAIDSD--------AALDL---------PSKPEKIAIVGGGYIALEFAGIFSGLTS-EVHVFIRQKKV-LRGFDEDI 288 (551)
Q Consensus 230 ~--~~~~~~--------~~~~~---------~~~~~~vvViG~G~~g~e~a~~l~~~g~-~Vtlv~~~~~~-l~~~~~~~ 288 (551)
+ .+++.. +...+ ...+++|+|||+|.+|+++|..+.++|. +|+++.+.+.. ++..+.
T Consensus 434 ~~~Gv~~a~~~l~~~~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~a~r~ga~~Vt~i~~~~~~~~~~~~~-- 511 (654)
T PRK12769 434 DAPGVYDALPFLIANTKQVMGLEELPEEPFINTAGLNVVVLGGGDTAMDCVRTALRHGASNVTCAYRRDEANMPGSKK-- 511 (654)
T ss_pred CCCCeEEhHHHHHHHHhhhccCccccccccccCCCCeEEEECCcHHHHHHHHHHHHcCCCeEEEeEecCCCCCCCCHH--
Confidence 3 233211 11111 1236799999999999999999889986 79999987653 333322
Q ss_pred HHHHHHHHHhcCcEEEcCcccEEEEEcCCc-eEEEEE---------CCC---------e--EEEeeEEEEecCcCCCCCC
Q 008860 289 RDFVAEQMSLRGIEFHTEESPQAILKSTDG-SLSVKT---------NKG---------T--VDGFSHVMFATGRRPNTKN 347 (551)
Q Consensus 289 ~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~-~~~V~~---------~~G---------~--~i~~d~vi~a~G~~p~~~~ 347 (551)
..+.+++.||++++++.++++..++++ ...|++ .+| + ++++|.||+|+|+.|+...
T Consensus 512 ---e~~~~~~~Gv~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~G~~~~~~~~g~~~~i~~D~Vi~AiG~~p~~~~ 588 (654)
T PRK12769 512 ---EVKNAREEGANFEFNVQPVALELNEQGHVCGIRFLRTRLGEPDAQGRRRPVPIPGSEFVMPADAVIMAFGFNPHGMP 588 (654)
T ss_pred ---HHHHHHHcCCeEEeccCcEEEEECCCCeEEEEEEEEEEecCcCCCCCCcceeCCCceEEEECCEEEECccCCCCccc
Confidence 235578899999999999999764433 223332 122 2 5999999999999998642
Q ss_pred CCccccCeeecCCCCeEeCC----CCCCCCCcEEEeCcCCCCCCChHHHHHhHHHHHHHHc
Q 008860 348 LGLEKVGVKMTKNGAIEVDE----YSGTAVPSIWAVGDVTDRINLTPVALMEGGALAKTLF 404 (551)
Q Consensus 348 l~l~~~gl~~~~~G~i~vd~----~~~t~~~~vya~GD~~~~~~~~~~A~~~g~~aa~~i~ 404 (551)
+ ++..+++++++|.|.||+ +++|++|+|||+||++.++.++..|+.+|+.||.+|.
T Consensus 589 ~-~~~~gl~~~~~G~i~vd~~~~~~~~Ts~~gVfAaGD~~~g~~~vv~Ai~~Gr~AA~~I~ 648 (654)
T PRK12769 589 W-LESHGVTVDKWGRIIADVESQYRYQTSNPKIFAGGDAVRGADLVVTAMAEGRHAAQGII 648 (654)
T ss_pred c-ccccCCcCCCCCCEEeCCCcccCcccCCCCEEEcCCcCCCCcHHHHHHHHHHHHHHHHH
Confidence 2 677789999999999996 4899999999999999988888999999999999985
|
|
| >TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.9e-27 Score=251.20 Aligned_cols=279 Identities=22% Similarity=0.291 Sum_probs=191.9
Q ss_pred CccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhhccCCCccc
Q 008860 72 DFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDESNGFGWKY 151 (551)
Q Consensus 72 ~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~~ 151 (551)
.++|+|||||++|+++|..|++.|++|+|+|+ ...+||.+.+ | +|. +
T Consensus 143 ~~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~---------~~~~gG~l~~-g-ip~------------------~---- 189 (485)
T TIGR01317 143 GKKVAVVGSGPAGLAAADQLNRAGHTVTVFER---------EDRCGGLLMY-G-IPN------------------M---- 189 (485)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCeEEEEec---------CCCCCceeec-c-CCC------------------c----
Confidence 47999999999999999999999999999993 3456666431 1 120 0
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEeEEEEecCCEEEEcCEEEEeCeEEEcCCCC-CCCCCCCCCC
Q 008860 152 GTEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIEGRGKIVDPHTVDVDGKLYSARHILISVGGR-PFIPDIPGSE 230 (551)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~i~~~~v~v~g~~~~~d~lviAtG~~-p~~p~i~g~~ 230 (551)
..+ ..+. ....+.+++.|++++.+.....+ +..+.....||.|++|||+. |..+++||.+
T Consensus 190 ----~~~-~~~~-----------~~~~~~~~~~Gv~~~~~~~v~~~---~~~~~~~~~~d~VilAtGa~~~~~l~i~G~~ 250 (485)
T TIGR01317 190 ----KLD-KAIV-----------DRRIDLLSAEGIDFVTNTEIGVD---ISADELKEQFDAVVLAGGATKPRDLPIPGRE 250 (485)
T ss_pred ----cCC-HHHH-----------HHHHHHHHhCCCEEECCCEeCCc---cCHHHHHhhCCEEEEccCCCCCCcCCCCCcC
Confidence 001 1111 11224456679999876533211 11122235799999999998 8888899864
Q ss_pred --ceecchhhh----------------cCCCCCCeEEEEcCcHHHHHHHHHHHhCC-CeEEEEeecCccCCCC--C----
Q 008860 231 --YAIDSDAAL----------------DLPSKPEKIAIVGGGYIALEFAGIFSGLT-SEVHVFIRQKKVLRGF--D---- 285 (551)
Q Consensus 231 --~~~~~~~~~----------------~~~~~~~~vvViG~G~~g~e~a~~l~~~g-~~Vtlv~~~~~~l~~~--~---- 285 (551)
.+++.-+++ .....+++|+|||+|++|+|+|..+.++| .+|+++++.+..+... +
T Consensus 251 ~~gV~~~~~~l~~~~~~~~~~~~~~~~~~~~~gk~VvViGgG~~g~d~a~~a~~~ga~~V~vv~~~~~~~~~~~~~~~~~ 330 (485)
T TIGR01317 251 LKGIHYAMEFLPSATKALLGKDFKDIIFIKAKGKKVVVIGGGDTGADCVGTSLRHGAASVHQFEIMPKPPEARAKDNPWP 330 (485)
T ss_pred CCCcEeHHHHHHHHhhhhccccccccccccCCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEEecCCChhhcccccCCC
Confidence 343322111 01134789999999999999987777776 5799999877644321 1
Q ss_pred ---H--HHHHHHHHHHHhcCcEE-EcCcccEEEEEcC-CceEEEEE--------CCC-----------eEEEeeEEEEec
Q 008860 286 ---E--DIRDFVAEQMSLRGIEF-HTEESPQAILKST-DGSLSVKT--------NKG-----------TVDGFSHVMFAT 339 (551)
Q Consensus 286 ---~--~~~~~l~~~l~~~Gv~i-~~~~~v~~i~~~~-~~~~~V~~--------~~G-----------~~i~~d~vi~a~ 339 (551)
. ++.....+..+..|+.+ ++++.+.+|..++ +.+..|.+ .+| .++++|.||+|+
T Consensus 331 ~~~~~~e~~~a~~e~~~~~gv~~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~Gr~~p~~~~g~~~~i~~D~Vi~Ai 410 (485)
T TIGR01317 331 EWPRVYRVDYAHEEAAAHYGRDPREYSILTKEFIGDDEGKVTALRTVRVEWKKSQDGKWQFVEIPGSEEVFEADLVLLAM 410 (485)
T ss_pred ccchhhhhHHHHHhhhhhcCccceEEecCcEEEEEcCCCeEEEEEEEEEEeccCCCCCccceecCCceEEEECCEEEEcc
Confidence 0 12223344444567654 5677888887654 33333332 133 269999999999
Q ss_pred CcC-CCCCCCCccccCeeecCCCCeE-eCCCCCCCCCcEEEeCcCCCCCCChHHHHHhHHHHHHHHc
Q 008860 340 GRR-PNTKNLGLEKVGVKMTKNGAIE-VDEYSGTAVPSIWAVGDVTDRINLTPVALMEGGALAKTLF 404 (551)
Q Consensus 340 G~~-p~~~~l~l~~~gl~~~~~G~i~-vd~~~~t~~~~vya~GD~~~~~~~~~~A~~~g~~aa~~i~ 404 (551)
|.. |++.+ ++..+++++++|.+. +|++++|+.|+|||+|||+..+.++..|+.+|++||.+|.
T Consensus 411 G~~~p~~~~--~~~~gl~~~~~G~i~~~~~~~~Ts~~gVfAaGD~~~g~~~~~~Av~~G~~AA~~i~ 475 (485)
T TIGR01317 411 GFVGPEQIL--LDDFGVKKTRRGNISAGYDDYSTSIPGVFAAGDCRRGQSLIVWAINEGRKAAAAVD 475 (485)
T ss_pred CcCCCcccc--ccccCcccCCCCCEEecCCCceECCCCEEEeeccCCCcHHHHHHHHHHHHHHHHHH
Confidence 996 88876 567788888889885 4678999999999999999888888899999999999974
|
This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate. |
| >KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.8e-28 Score=236.72 Aligned_cols=283 Identities=22% Similarity=0.382 Sum_probs=204.9
Q ss_pred CCCccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhhccCCCc
Q 008860 70 HYDFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDESNGFGW 149 (551)
Q Consensus 70 ~~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~ 149 (551)
..+.+|||+|+|.+|.+....|-..-++|++|. |+++ . ...-..||..
T Consensus 53 ~kKk~vVVLGsGW~a~S~lk~ldts~YdV~vVS-PRny-----F-------lFTPLLpS~~------------------- 100 (491)
T KOG2495|consen 53 GKKKRVVVLGSGWGAISLLKKLDTSLYDVTVVS-PRNY-----F-------LFTPLLPSTT------------------- 100 (491)
T ss_pred CCCceEEEEcCchHHHHHHHhccccccceEEec-cccc-----e-------EEeeccCCcc-------------------
Confidence 346899999999999999999988889999999 2221 0 0001111100
Q ss_pred ccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEeEEEEecCC--EEEE-----cC----EEEEeCeEEEcCC
Q 008860 150 KYGTEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIEGRGKIVDPH--TVDV-----DG----KLYSARHILISVG 218 (551)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~i~~~--~v~v-----~g----~~~~~d~lviAtG 218 (551)
-..+..+++.+........ ...++.++..+...+|+. .+.+ ++ ..+.||+||+|+|
T Consensus 101 ----vGTve~rSIvEPIr~i~r~---------k~~~~~y~eAec~~iDp~~k~V~~~s~t~~~~~~e~~i~YDyLViA~G 167 (491)
T KOG2495|consen 101 ----VGTVELRSIVEPIRAIARK---------KNGEVKYLEAECTKIDPDNKKVHCRSLTADSSDKEFVIGYDYLVIAVG 167 (491)
T ss_pred ----ccceeehhhhhhHHHHhhc---------cCCCceEEecccEeecccccEEEEeeeccCCCcceeeecccEEEEecc
Confidence 1122233333322211111 122678888887777764 4444 33 4789999999999
Q ss_pred CCCCCCCCCCCC-c------eecchhh-------h---cCCC-------CCCeEEEEcCcHHHHHHHHHHHhC-------
Q 008860 219 GRPFIPDIPGSE-Y------AIDSDAA-------L---DLPS-------KPEKIAIVGGGYIALEFAGIFSGL------- 267 (551)
Q Consensus 219 ~~p~~p~i~g~~-~------~~~~~~~-------~---~~~~-------~~~~vvViG~G~~g~e~a~~l~~~------- 267 (551)
+.++.+.+||.. + +.+..++ + ++.. .--+++|||||++|+|+|..|+.+
T Consensus 168 A~~~TFgipGV~e~~~FLKEv~dAqeIR~~~~~~le~a~~~~l~~eerkRlLh~VVVGGGPTGVEFAaEL~Dfi~~Dl~k 247 (491)
T KOG2495|consen 168 AEPNTFGIPGVEENAHFLKEVEDAQEIRRKVIDNLEKAELPGLSDEERKRLLHFVVVGGGPTGVEFAAELADFIPEDLRK 247 (491)
T ss_pred CCCCCCCCCchhhchhhhhhhhHHHHHHHHHHHHHHHhhcCCCChHHhhheEEEEEECCCCcceeehHHHHHHHHHHHHH
Confidence 999999999963 2 1122211 0 1111 112789999999999999988754
Q ss_pred -------CCeEEEEeecCccCCCCCHHHHHHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEECCCe--EEEeeEEEEe
Q 008860 268 -------TSEVHVFIRQKKVLRGFDEDIRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTNKGT--VDGFSHVMFA 338 (551)
Q Consensus 268 -------g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~G~--~i~~d~vi~a 338 (551)
-.+||+++..+.+|+.||..+.+..++.+.+.||++..++.|.++.... +.+...+|+ +|++-+++|+
T Consensus 248 ~yp~l~~~i~vtLiEA~d~iL~mFdkrl~~yae~~f~~~~I~~~~~t~Vk~V~~~~---I~~~~~~g~~~~iPYG~lVWa 324 (491)
T KOG2495|consen 248 IYPELKKDIKVTLIEAADHILNMFDKRLVEYAENQFVRDGIDLDTGTMVKKVTEKT---IHAKTKDGEIEEIPYGLLVWA 324 (491)
T ss_pred hhhcchhheEEEeeccchhHHHHHHHHHHHHHHHHhhhccceeecccEEEeecCcE---EEEEcCCCceeeecceEEEec
Confidence 3589999999999999999999999999999999999999999996543 666666774 6899999999
Q ss_pred cCcCCCCCCCCccccCeeecCCC--CeEeCCCCCC-CCCcEEEeCcCCCC---CCChHHHHHhHHHHHHHH
Q 008860 339 TGRRPNTKNLGLEKVGVKMTKNG--AIEVDEYSGT-AVPSIWAVGDVTDR---INLTPVALMEGGALAKTL 403 (551)
Q Consensus 339 ~G~~p~~~~l~l~~~gl~~~~~G--~i~vd~~~~t-~~~~vya~GD~~~~---~~~~~~A~~~g~~aa~~i 403 (551)
||..|... ....--.+++.| ++.|||+||. +.+||||+|||+.. .+++.+|.+||.++|+|+
T Consensus 325 tG~~~rp~---~k~lm~~i~e~~rr~L~vDE~LrV~G~~nvfAiGDca~~~~~~~tAQVA~QqG~yLAk~f 392 (491)
T KOG2495|consen 325 TGNGPRPV---IKDLMKQIDEQGRRGLAVDEWLRVKGVKNVFAIGDCADQRGLKPTAQVAEQQGAYLAKNF 392 (491)
T ss_pred CCCCCchh---hhhHhhcCCccCceeeeeeceeeccCcCceEEeccccccccCccHHHHHHHHHHHHHHHH
Confidence 99988764 223333345555 8999999996 89999999999953 468889999999999986
|
|
| >KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.7e-27 Score=211.41 Aligned_cols=283 Identities=23% Similarity=0.268 Sum_probs=204.0
Q ss_pred CccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhhccCCCccc
Q 008860 72 DFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDESNGFGWKY 151 (551)
Q Consensus 72 ~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~~ 151 (551)
+-+|+|||+|||+.+||+++++..++-+|+|..+.- .-..||+... ...+.+++.|.-.
T Consensus 8 ~e~v~IiGSGPAa~tAAiYaaraelkPllfEG~~~~-----~i~pGGQLtT---------------TT~veNfPGFPdg- 66 (322)
T KOG0404|consen 8 NENVVIIGSGPAAHTAAIYAARAELKPLLFEGMMAN-----GIAPGGQLTT---------------TTDVENFPGFPDG- 66 (322)
T ss_pred eeeEEEEccCchHHHHHHHHhhcccCceEEeeeecc-----CcCCCceeee---------------eeccccCCCCCcc-
Confidence 458999999999999999999999999999931110 2234565432 2345566665432
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEeEEEEec----CCEEEEcCEEEEeCeEEEcCCCCCCCCCCC
Q 008860 152 GTEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIEGRGKIVD----PHTVDVDGKLYSARHILISVGGRPFIPDIP 227 (551)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~i~----~~~v~v~g~~~~~d~lviAtG~~p~~p~i~ 227 (551)
+...++++++++.. ++.|.+++..++..++ ++.+..+.+.+.+|.+|+|||+..+...+|
T Consensus 67 -----i~G~~l~d~mrkqs-----------~r~Gt~i~tEtVskv~~sskpF~l~td~~~v~~~avI~atGAsAkRl~~p 130 (322)
T KOG0404|consen 67 -----ITGPELMDKMRKQS-----------ERFGTEIITETVSKVDLSSKPFKLWTDARPVTADAVILATGASAKRLHLP 130 (322)
T ss_pred -----cccHHHHHHHHHHH-----------HhhcceeeeeehhhccccCCCeEEEecCCceeeeeEEEecccceeeeecC
Confidence 33456666555433 4458999888776654 455566888999999999999988877777
Q ss_pred CC-Cc-ee--------cchhhhcCCCCCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCCCCCHHHHHHHH-HHH
Q 008860 228 GS-EY-AI--------DSDAALDLPSKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRDFVA-EQM 296 (551)
Q Consensus 228 g~-~~-~~--------~~~~~~~~~~~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~-~~l 296 (551)
|. +. +| -++.+.-+ ...|.++|||||.+++|-|.+|.+.+.+|++++|++.+.. +..++ +.+
T Consensus 131 g~ge~~fWqrGiSaCAVCDGaapi-frnk~laVIGGGDsA~EEA~fLtkyaskVyii~Rrd~fRA------s~~Mq~ra~ 203 (322)
T KOG0404|consen 131 GEGEGEFWQRGISACAVCDGAAPI-FRNKPLAVIGGGDSAMEEALFLTKYASKVYIIHRRDHFRA------SKIMQQRAE 203 (322)
T ss_pred CCCcchHHhcccchhhcccCcchh-hcCCeeEEEcCcHHHHHHHHHHHhhccEEEEEEEhhhhhH------HHHHHHHHh
Confidence 75 32 11 12222111 2357899999999999999999999999999999987632 33444 445
Q ss_pred HhcCcEEEcCcccEEEEEcCCc--eEEEE---ECCCeEEEeeEEEEecCcCCCCCCCCccccCeeecCCCCeEeCC-CCC
Q 008860 297 SLRGIEFHTEESPQAILKSTDG--SLSVK---TNKGTVDGFSHVMFATGRRPNTKNLGLEKVGVKMTKNGAIEVDE-YSG 370 (551)
Q Consensus 297 ~~~Gv~i~~~~~v~~i~~~~~~--~~~V~---~~~G~~i~~d~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~-~~~ 370 (551)
+.-+|++++|+.+.+...+++. .+.++ +.+-..++++-++.++|..|++.+ ++. .+++|++|+|++-+ .-.
T Consensus 204 ~npnI~v~~nt~~~ea~gd~~~l~~l~ikn~~tge~~dl~v~GlFf~IGH~Pat~~--l~g-qve~d~~GYi~t~pgts~ 280 (322)
T KOG0404|consen 204 KNPNIEVLYNTVAVEALGDGKLLNGLRIKNVKTGEETDLPVSGLFFAIGHSPATKF--LKG-QVELDEDGYIVTRPGTSL 280 (322)
T ss_pred cCCCeEEEechhhhhhccCcccccceEEEecccCcccccccceeEEEecCCchhhH--hcC-ceeeccCceEEeccCccc
Confidence 5669999999999888776432 12332 233346999999999999999998 444 89999999999985 567
Q ss_pred CCCCcEEEeCcCCCC-CCChHHHHHhHHHHHH
Q 008860 371 TAVPSIWAVGDVTDR-INLTPVALMEGGALAK 401 (551)
Q Consensus 371 t~~~~vya~GD~~~~-~~~~~~A~~~g~~aa~ 401 (551)
||+|++||+||+... +.++..|...|.++|.
T Consensus 281 TsvpG~FAAGDVqD~kyRQAvTaAgsGciaal 312 (322)
T KOG0404|consen 281 TSVPGVFAAGDVQDKKYRQAVTAAGSGCIAAL 312 (322)
T ss_pred ccccceeeccccchHHHHHHHhhhccchhhhh
Confidence 999999999999874 4445555556666554
|
|
| >PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.2e-27 Score=255.40 Aligned_cols=277 Identities=21% Similarity=0.327 Sum_probs=196.0
Q ss_pred CCccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhhccCCCcc
Q 008860 71 YDFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDESNGFGWK 150 (551)
Q Consensus 71 ~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~ 150 (551)
...+|+|||||++|+++|..|++.|++|+|+|+ ...+||.+. +|+.+.
T Consensus 309 ~~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~---------~~~~GG~l~-~gip~~---------------------- 356 (639)
T PRK12809 309 RSEKVAVIGAGPAGLGCADILARAGVQVDVFDR---------HPEIGGMLT-FGIPPF---------------------- 356 (639)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHcCCcEEEEeC---------CCCCCCeee-ccCCcc----------------------
Confidence 357899999999999999999999999999993 455677653 333221
Q ss_pred cCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEeEEEEecCCEEEEcCEEEEeCeEEEcCCCCC-CCCCCCCC
Q 008860 151 YGTEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIEGRGKIVDPHTVDVDGKLYSARHILISVGGRP-FIPDIPGS 229 (551)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~i~~~~v~v~g~~~~~d~lviAtG~~p-~~p~i~g~ 229 (551)
.++ ..+. ....+.+.+.|+++..+.... ..+.++.....||.|++|||+.+ ..+++||.
T Consensus 357 -----~l~-~~~~-----------~~~~~~~~~~Gv~~~~~~~v~---~~~~~~~l~~~~DaV~latGa~~~~~~~i~g~ 416 (639)
T PRK12809 357 -----KLD-KTVL-----------SQRREIFTAMGIDFHLNCEIG---RDITFSDLTSEYDAVFIGVGTYGMMRADLPHE 416 (639)
T ss_pred -----cCC-HHHH-----------HHHHHHHHHCCeEEEcCCccC---CcCCHHHHHhcCCEEEEeCCCCCCCCCCCCCC
Confidence 011 1111 112245567799988764211 11222223357999999999874 45667775
Q ss_pred C--ceecc--------hhhhcC---------CCCCCeEEEEcCcHHHHHHHHHHHhCCC-eEEEEeecCcc-CCCCCHHH
Q 008860 230 E--YAIDS--------DAALDL---------PSKPEKIAIVGGGYIALEFAGIFSGLTS-EVHVFIRQKKV-LRGFDEDI 288 (551)
Q Consensus 230 ~--~~~~~--------~~~~~~---------~~~~~~vvViG~G~~g~e~a~~l~~~g~-~Vtlv~~~~~~-l~~~~~~~ 288 (551)
+ .+++. .+...+ ...+++++|+|+|.++++.|..+.++|. +||++.+.+.. ++....++
T Consensus 417 ~~~gv~~a~~~l~~~~~~~~~~~~~~~~~~~~~~gk~vvViGgG~~a~d~a~~~~~~Ga~~Vt~v~rr~~~~~~~~~~e~ 496 (639)
T PRK12809 417 DAPGVIQALPFLTAHTRQLMGLPESEEYPLTDVEGKRVVVLGGGDTTMDCLRTSIRLNAASVTCAYRRDEVSMPGSRKEV 496 (639)
T ss_pred ccCCcEeHHHHHHHHHHhhccCccccccccccCCCCeEEEECCcHHHHHHHHHHHHcCCCeEEEeeecCcccCCCCHHHH
Confidence 4 23321 111111 1246899999999999999999888885 89999987654 33333322
Q ss_pred HHHHHHHHHhcCcEEEcCcccEEEEEcCCceE-EEEE---C------CC-----------eEEEeeEEEEecCcCCCCCC
Q 008860 289 RDFVAEQMSLRGIEFHTEESPQAILKSTDGSL-SVKT---N------KG-----------TVDGFSHVMFATGRRPNTKN 347 (551)
Q Consensus 289 ~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~-~V~~---~------~G-----------~~i~~d~vi~a~G~~p~~~~ 347 (551)
..+++.||++++++.+++|..++++.+ .+.+ . +| ..+++|.||+|+|+.|+...
T Consensus 497 -----~~a~~eGv~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~g~~~~i~aD~Vi~AiG~~p~~~~ 571 (639)
T PRK12809 497 -----VNAREEGVEFQFNVQPQYIACDEDGRLTAVGLIRTAMGEPGPDGRRRPRPVAGSEFELPADVLIMAFGFQAHAMP 571 (639)
T ss_pred -----HHHHHcCCeEEeccCCEEEEECCCCeEEEEEEEEEEecCcCCCCCccceecCCceEEEECCEEEECcCCCCCccc
Confidence 235678999999999999986544322 2321 1 12 26899999999999997543
Q ss_pred CCccccCeeecCCCCeEeCC----CCCCCCCcEEEeCcCCCCCCChHHHHHhHHHHHHHHcC
Q 008860 348 LGLEKVGVKMTKNGAIEVDE----YSGTAVPSIWAVGDVTDRINLTPVALMEGGALAKTLFQ 405 (551)
Q Consensus 348 l~l~~~gl~~~~~G~i~vd~----~~~t~~~~vya~GD~~~~~~~~~~A~~~g~~aa~~i~g 405 (551)
+ ++..+++++++|.|.||+ +++|+.|+|||+||++.++.++..|+.+|+.||.+|..
T Consensus 572 ~-~~~~gl~~~~~G~i~vd~~~~~~~~Ts~~gVfA~GD~~~g~~~vv~Ai~~Gr~AA~~i~~ 632 (639)
T PRK12809 572 W-LQGSGIKLDKWGLIQTGDVGYLPTQTHLKKVFAGGDAVHGADLVVTAMAAGRQAARDMLT 632 (639)
T ss_pred c-ccccCcccCCCCCEEeCCCcccCcccCCCCEEEcCCCCCCchHHHHHHHHHHHHHHHHHH
Confidence 2 667889999999999986 47999999999999999888888999999999999863
|
|
| >PRK13984 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.2e-27 Score=255.73 Aligned_cols=277 Identities=21% Similarity=0.312 Sum_probs=186.7
Q ss_pred CCccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhhccCCCcc
Q 008860 71 YDFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDESNGFGWK 150 (551)
Q Consensus 71 ~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~ 150 (551)
...+|+|||+|+||+++|..|++.|++|+|+|+ ....||.... + +|. +
T Consensus 282 ~~~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~---------~~~~gG~~~~-~-i~~------------------~--- 329 (604)
T PRK13984 282 KNKKVAIVGSGPAGLSAAYFLATMGYEVTVYES---------LSKPGGVMRY-G-IPS------------------Y--- 329 (604)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEec---------CCCCCceEee-c-CCc------------------c---
Confidence 457899999999999999999999999999993 4455665421 1 110 0
Q ss_pred cCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEeEEEEecCCEEEEcCEEEEeCeEEEcCCCC-CCCCCCCCC
Q 008860 151 YGTEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIEGRGKIVDPHTVDVDGKLYSARHILISVGGR-PFIPDIPGS 229 (551)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~i~~~~v~v~g~~~~~d~lviAtG~~-p~~p~i~g~ 229 (551)
. ...++.. ...+.+++.|++++.+.....+ +..+.....||+||+|||+. |+.+++||.
T Consensus 330 -----~-~~~~~~~-----------~~~~~~~~~gv~~~~~~~v~~~---~~~~~~~~~yD~vilAtGa~~~r~l~i~G~ 389 (604)
T PRK13984 330 -----R-LPDEALD-----------KDIAFIEALGVKIHLNTRVGKD---IPLEELREKHDAVFLSTGFTLGRSTRIPGT 389 (604)
T ss_pred -----c-CCHHHHH-----------HHHHHHHHCCcEEECCCEeCCc---CCHHHHHhcCCEEEEEcCcCCCccCCCCCc
Confidence 0 0111111 1123456678998876433211 11122235799999999987 577889986
Q ss_pred C--ceecchhhhc-C----------CCCCCeEEEEcCcHHHHHHHHHHHhCCC------eEEEEeecCccCCCCCHHHHH
Q 008860 230 E--YAIDSDAALD-L----------PSKPEKIAIVGGGYIALEFAGIFSGLTS------EVHVFIRQKKVLRGFDEDIRD 290 (551)
Q Consensus 230 ~--~~~~~~~~~~-~----------~~~~~~vvViG~G~~g~e~a~~l~~~g~------~Vtlv~~~~~~l~~~~~~~~~ 290 (551)
+ .+++..+.+. + ...+++|+|||+|++|+|+|..+.+++. +|+++.... ....++... .
T Consensus 390 ~~~gv~~a~~~l~~~~~~~~~~~~~~~~~k~VvVIGGG~~g~e~A~~l~r~~~~~~g~~~V~v~~~~r-~~~~~~~~~-~ 467 (604)
T PRK13984 390 DHPDVIQALPLLREIRDYLRGEGPKPKIPRSLVVIGGGNVAMDIARSMARLQKMEYGEVNVKVTSLER-TFEEMPADM-E 467 (604)
T ss_pred CCcCeEeHHHHHHHHHhhhccCCCcCCCCCcEEEECCchHHHHHHHHHHhccccccCceEEEEecccc-CcccCCCCH-H
Confidence 4 2443333322 1 1236899999999999999999998753 788764321 111122221 1
Q ss_pred HHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEEC--------C-----------CeEEEeeEEEEecCcCCCCCCCCcc
Q 008860 291 FVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTN--------K-----------GTVDGFSHVMFATGRRPNTKNLGLE 351 (551)
Q Consensus 291 ~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~--------~-----------G~~i~~d~vi~a~G~~p~~~~l~l~ 351 (551)
.+.+ +.+.||++++++.+.++..+++....|++. + ++++++|.||+|+|+.|+++++..+
T Consensus 468 e~~~-~~~~GV~i~~~~~~~~i~~~~g~v~~v~~~~~~~~~~~~G~~~~~~~~g~~~~i~aD~Vi~aiG~~p~~~~l~~~ 546 (604)
T PRK13984 468 EIEE-GLEEGVVIYPGWGPMEVVIENDKVKGVKFKKCVEVFDEEGRFNPKFDESDQIIVEADMVVEAIGQAPDYSYLPEE 546 (604)
T ss_pred HHHH-HHHcCCEEEeCCCCEEEEccCCEEEEEEEEEEeeccCCCCCccceecCCceEEEECCEEEEeeCCCCChhhhhhh
Confidence 2333 346799999999998886544432333321 1 2369999999999999998875311
Q ss_pred -ccCeeecCCCCeEeCCCCCCCCCcEEEeCcCCCCCCChHHHHHhHHHHHHHHc
Q 008860 352 -KVGVKMTKNGAIEVDEYSGTAVPSIWAVGDVTDRINLTPVALMEGGALAKTLF 404 (551)
Q Consensus 352 -~~gl~~~~~G~i~vd~~~~t~~~~vya~GD~~~~~~~~~~A~~~g~~aa~~i~ 404 (551)
..++++ ++|.|.||+++||++|+|||+||++..+.+ ..|+.+|+.||.+|.
T Consensus 547 ~~~~l~~-~~G~i~vd~~~~Ts~~gVfAaGD~~~~~~~-v~Ai~~G~~AA~~I~ 598 (604)
T PRK13984 547 LKSKLEF-VRGRILTNEYGQTSIPWLFAGGDIVHGPDI-IHGVADGYWAAEGID 598 (604)
T ss_pred hccCccc-cCCeEEeCCCCccCCCCEEEecCcCCchHH-HHHHHHHHHHHHHHH
Confidence 124554 468899999999999999999999987754 679999999999975
|
|
| >COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.9e-25 Score=233.56 Aligned_cols=319 Identities=24% Similarity=0.250 Sum_probs=232.9
Q ss_pred hCCeEEEEe-EEEEecC--CEEEE-cCEEEEeCeEEEcCCCCCCCCCCCCCCce---ecchhhhcCC---CCCCeEEEEc
Q 008860 183 NAGITLIEG-RGKIVDP--HTVDV-DGKLYSARHILISVGGRPFIPDIPGSEYA---IDSDAALDLP---SKPEKIAIVG 252 (551)
Q Consensus 183 ~~~v~~~~~-~~~~i~~--~~v~v-~g~~~~~d~lviAtG~~p~~p~i~g~~~~---~~~~~~~~~~---~~~~~vvViG 252 (551)
+.++++..+ .+..+++ +.+.+ ++ .+.||++++|||++|..++....... ...++..... ...++++|+|
T Consensus 65 ~~~i~~~~~~~v~~id~~~~~v~~~~g-~~~yd~LvlatGa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vvG 143 (415)
T COG0446 65 ATGIDVRTGTEVTSIDPENKVVLLDDG-EIEYDYLVLATGARPRPPPISDWEGVVTLRLREDAEALKGGAEPPKDVVVVG 143 (415)
T ss_pred hhCCEEeeCCEEEEecCCCCEEEECCC-cccccEEEEcCCCcccCCCccccCceEEECCHHHHHHHHHHHhccCeEEEEC
Confidence 346777765 4666765 45555 55 89999999999999998761112212 2222222221 1257999999
Q ss_pred CcHHHHHHHHHHHhCCCeEEEEeecCccCCCCC-HHHHHHHHHHHHhcCcEEEcCcccEEEEEcCCceEE--EEECCCeE
Q 008860 253 GGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFD-EDIRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLS--VKTNKGTV 329 (551)
Q Consensus 253 ~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~~~~-~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~--V~~~~G~~ 329 (551)
+|++|+|+|..+++.|++|++++..+++++.+. +++.+.+.+.+++.||+++++..+.+|+...+.... +...+++.
T Consensus 144 ~G~~gle~A~~~~~~G~~v~l~e~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 223 (415)
T COG0446 144 AGPIGLEAAEAAAKRGKKVTLIEAADRLGGQLLDPEVAEELAELLEKYGVELLLGTKVVGVEGKGNTLVVERVVGIDGEE 223 (415)
T ss_pred CcHHHHHHHHHHHHcCCeEEEEEcccccchhhhhHHHHHHHHHHHHHCCcEEEeCCceEEEEcccCcceeeEEEEeCCcE
Confidence 999999999999999999999999999988766 899999999999999999999999999887654222 57778888
Q ss_pred EEeeEEEEecCcCCCCCCCCccccC-eeecCCCCeEeCCCCCCC-CCcEEEeCcCCCC----------CCChHHHHHhHH
Q 008860 330 DGFSHVMFATGRRPNTKNLGLEKVG-VKMTKNGAIEVDEYSGTA-VPSIWAVGDVTDR----------INLTPVALMEGG 397 (551)
Q Consensus 330 i~~d~vi~a~G~~p~~~~l~l~~~g-l~~~~~G~i~vd~~~~t~-~~~vya~GD~~~~----------~~~~~~A~~~g~ 397 (551)
+++|.+++++|.+|+..+ ..+.+ .....+|+|.||++++|+ .++|||+|||+.. ...+..|..+++
T Consensus 224 ~~~d~~~~~~g~~p~~~l--~~~~~~~~~~~~g~i~v~~~~~~~~~~~v~a~GD~~~~~~~~~~~~~~~~~~~~a~~~~~ 301 (415)
T COG0446 224 IKADLVIIGPGERPNVVL--ANDALPGLALAGGAVLVDERGGTSKDPDVYAAGDVAEIPAAETGKGGRIALWAIAVAAGR 301 (415)
T ss_pred EEeeEEEEeecccccHHH--HhhCccceeccCCCEEEccccccCCCCCEEeccceEeeecccCCceeeeechhhHhhhhH
Confidence 999999999999999775 34443 145667889999999997 9999999998874 245678999999
Q ss_pred HHHHHHcCCCCCCCCCCCccEEEecCCceEEeeCCHHHHHhcCCCeEEEEeeccCcccc-cccCCCcEEEEEEEECCCCe
Q 008860 398 ALAKTLFQAEPTKPDYSAVPSAVFSQPPIGQVGLSEEQAIQEYGDIDVFTANFRPLKAT-LSGLPDRIFMKLVLCAKTNK 476 (551)
Q Consensus 398 ~aa~~i~g~~~~~~~~~~~~~~~~~~~~~~~vGl~~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~kl~~~~~~~~ 476 (551)
+++.++.+. ...............+......|+++. .+...+ ............. +.........|++++..+++
T Consensus 302 i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (415)
T COG0446 302 IAAENIAGA-LRIPGLLGTVISDVGDLCAASTGLTEG--KERGID-VVLVVSGGKDPRAHLYPGAELVGIKLVGDADTGR 377 (415)
T ss_pred HHHHHhccc-cccccccCceEEEEcCeEEEEecCCcc--ccccee-eeEEEeccCcccccccCCCCeEEEEEEEcCcccc
Confidence 999999976 222111222223344567888998887 222212 1111111111122 22333445788999989999
Q ss_pred EEEEEEECCChhHHHHHHHHHHHCCCCHHHHccC
Q 008860 477 VLGLHMCGEDAPEIVQGFAVAVKAGLTKADFDAT 510 (551)
Q Consensus 477 ilG~~~~g~~~~e~i~~~~~~i~~~~~~~~l~~~ 510 (551)
++|++. -. ....++.+..++..+.++.++...
T Consensus 378 ~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~ 409 (415)
T COG0446 378 ILGGQE-LE-VLKRIGALALAIGLGDTVAELDAL 409 (415)
T ss_pred eehhhh-HH-HHhhhhhhhhhhhhcCchhhhhhc
Confidence 999999 43 667889999999999999888654
|
|
| >PLN02852 ferredoxin-NADP+ reductase | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.7e-25 Score=232.57 Aligned_cols=282 Identities=17% Similarity=0.228 Sum_probs=190.0
Q ss_pred CccEEEECCChHHHHHHHHHHh--CCCcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhhccCCCc
Q 008860 72 DFDLFTIGAGSGGVRASRFAAN--FGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDESNGFGW 149 (551)
Q Consensus 72 ~~dVvIIGgG~aGl~aA~~l~~--~G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~ 149 (551)
..+|+||||||||++||..|++ .|++|+|||+ ...+||.. .+|..|.
T Consensus 26 ~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~---------~p~pgGlv-r~gvaP~--------------------- 74 (491)
T PLN02852 26 PLHVCVVGSGPAGFYTADKLLKAHDGARVDIIER---------LPTPFGLV-RSGVAPD--------------------- 74 (491)
T ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCeEEEEec---------CCCCcceE-eeccCCC---------------------
Confidence 5789999999999999999987 7999999993 44567754 3333331
Q ss_pred ccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEeEEEEecCCEEEEcCEEEEeCeEEEcCCCCC-CCCCCCC
Q 008860 150 KYGTEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIEGRGKIVDPHTVDVDGKLYSARHILISVGGRP-FIPDIPG 228 (551)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~i~~~~v~v~g~~~~~d~lviAtG~~p-~~p~i~g 228 (551)
+. ....+...+..++...+++++.+.. ++ ..+.++.....||.||+|||+.+ +.+++||
T Consensus 75 ---------~~--------~~k~v~~~~~~~~~~~~v~~~~nv~--vg-~dvtl~~L~~~yDaVIlAtGa~~~~~l~IpG 134 (491)
T PLN02852 75 ---------HP--------ETKNVTNQFSRVATDDRVSFFGNVT--LG-RDVSLSELRDLYHVVVLAYGAESDRRLGIPG 134 (491)
T ss_pred ---------cc--------hhHHHHHHHHHHHHHCCeEEEcCEE--EC-ccccHHHHhhhCCEEEEecCCCCCCCCCCCC
Confidence 00 0111122233345556788776421 11 22333333357999999999986 6778998
Q ss_pred CC--ceecchhhhc----------C---CCCCCeEEEEcCcHHHHHHHHHHHhC--------------------CC-eEE
Q 008860 229 SE--YAIDSDAALD----------L---PSKPEKIAIVGGGYIALEFAGIFSGL--------------------TS-EVH 272 (551)
Q Consensus 229 ~~--~~~~~~~~~~----------~---~~~~~~vvViG~G~~g~e~a~~l~~~--------------------g~-~Vt 272 (551)
.+ .+++..++.. + ...+++++|||+|++|+|+|..|.+. +. +|+
T Consensus 135 ~d~~gV~~a~~fl~~~ng~~d~~~~~~~~~~gk~VvVIGgGnvAlD~Ar~L~~~~~~l~~tdi~~~~l~~l~~~~~~~V~ 214 (491)
T PLN02852 135 EDLPGVLSAREFVWWYNGHPDCVHLPPDLKSSDTAVVLGQGNVALDCARILLRPTDELASTDIAEHALEALRGSSVRKVY 214 (491)
T ss_pred CCCCCeEEHHHHHHHhhcchhhhhhhhcccCCCEEEEECCCHHHHHHHHHHHhCccccccccccHHHHHHHhhCCCCEEE
Confidence 64 4555555421 1 12468999999999999999998765 64 699
Q ss_pred EEeecCccCCCC-CHHH-------------------------------------HHHHHHHHHh---------cCcEEEc
Q 008860 273 VFIRQKKVLRGF-DEDI-------------------------------------RDFVAEQMSL---------RGIEFHT 305 (551)
Q Consensus 273 lv~~~~~~l~~~-~~~~-------------------------------------~~~l~~~l~~---------~Gv~i~~ 305 (551)
++.|+...-..| ..++ .+.+.+...+ +++.+++
T Consensus 215 iv~RRg~~~~~ft~~Elrel~~l~~~~~~~~~~~~~~~~~~~~~~~~~r~~~r~~~~l~~~a~~~~~~~~~~~~~v~~~f 294 (491)
T PLN02852 215 LVGRRGPVQAACTAKELRELLGLKNVRVRIKEADLTLSPEDEEELKASRPKRRVYELLSKAAAAGKCAPSGGQRELHFVF 294 (491)
T ss_pred EEEcCChHhCCCCHHHHHHHhccCCCceeechhhhccccchhhhhccchhhHHHHHHHHHHHhhcccccCCCCceEEEEc
Confidence 999887421111 1111 1122222222 5799999
Q ss_pred CcccEEEEEc--C-CceEEEEEC-----------------CCe--EEEeeEEEEecCcC--CCCCC-CCccccCeeecCC
Q 008860 306 EESPQAILKS--T-DGSLSVKTN-----------------KGT--VDGFSHVMFATGRR--PNTKN-LGLEKVGVKMTKN 360 (551)
Q Consensus 306 ~~~v~~i~~~--~-~~~~~V~~~-----------------~G~--~i~~d~vi~a~G~~--p~~~~-l~l~~~gl~~~~~ 360 (551)
.....+|..+ + +.+..+++. +|+ +++||.||.++|+. |...+ + ....++..+.+
T Consensus 295 ~~sP~ei~~~~~~~~~v~~l~~~~~~l~~~~~~g~~~~~~tge~~~i~~D~Vi~aIG~~~~p~~~l~f-~~~~gv~~n~~ 373 (491)
T PLN02852 295 FRNPTRFLDSGDGNGHVAGVKLERTVLEGAAGSGKQVAVGTGEFEDLPCGLVLKSIGYKSLPVDGLPF-DHKRGVVPNVH 373 (491)
T ss_pred cCCCeEEEccCCCCCcEEEEEEEEeecCCCcccCCcccCCCCCEEEEECCEEEEeecCCCCCCCCCcc-ccCcCeeECCC
Confidence 9999999742 2 233334331 232 58999999999998 55442 2 13346777888
Q ss_pred CCeEeCCCCCCCCCcEEEeCcCCCCCC-ChHHHHHhHHHHHHHHcC
Q 008860 361 GAIEVDEYSGTAVPSIWAVGDVTDRIN-LTPVALMEGGALAKTLFQ 405 (551)
Q Consensus 361 G~i~vd~~~~t~~~~vya~GD~~~~~~-~~~~A~~~g~~aa~~i~g 405 (551)
|+|.+|+.++|++|+|||+|||..++. +...++.+|+.++++|..
T Consensus 374 G~V~~d~~~~T~ipGvyAaGDi~~Gp~gvI~t~~~dA~~ta~~i~~ 419 (491)
T PLN02852 374 GRVLSSASGADTEPGLYVVGWLKRGPTGIIGTNLTCAEETVASIAE 419 (491)
T ss_pred ceEEeCCCCccCCCCEEEeeeEecCCCCeeeecHhhHHHHHHHHHH
Confidence 999999988999999999999998764 667888999999998874
|
|
| >COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.9e-26 Score=216.19 Aligned_cols=280 Identities=21% Similarity=0.366 Sum_probs=203.1
Q ss_pred CCCCccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhhccCCC
Q 008860 69 SHYDFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDESNGFG 148 (551)
Q Consensus 69 ~~~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g 148 (551)
.+..|||+||||||||-+||++.+|+|.+.-++- ..+||+..-.-. +.++.
T Consensus 208 ~k~~yDVLvVGgGPAgaaAAiYaARKGiRTGl~a-----------erfGGQvldT~~---------------IENfI--- 258 (520)
T COG3634 208 AKDAYDVLVVGGGPAGAAAAIYAARKGIRTGLVA-----------ERFGGQVLDTMG---------------IENFI--- 258 (520)
T ss_pred ccCCceEEEEcCCcchhHHHHHHHhhcchhhhhh-----------hhhCCeeccccc---------------hhhee---
Confidence 3456999999999999999999999999988874 457777532110 01110
Q ss_pred cccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEe-EEEEec-------CCEEEE-cCEEEEeCeEEEcCCC
Q 008860 149 WKYGTEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIEG-RGKIVD-------PHTVDV-DGKLYSARHILISVGG 219 (551)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~i~-------~~~v~v-~g~~~~~d~lviAtG~ 219 (551)
..+....+++.....++++.+ .|++.+. ++..+. -..+++ +|-.+.++.+|++||+
T Consensus 259 ----sv~~teGpkl~~ale~Hv~~Y-----------~vDimn~qra~~l~~a~~~~~l~ev~l~nGavLkaktvIlstGA 323 (520)
T COG3634 259 ----SVPETEGPKLAAALEAHVKQY-----------DVDVMNLQRASKLEPAAVEGGLIEVELANGAVLKARTVILATGA 323 (520)
T ss_pred ----ccccccchHHHHHHHHHHhhc-----------CchhhhhhhhhcceecCCCCccEEEEecCCceeccceEEEecCc
Confidence 122334455555555444443 3333322 111111 224555 8889999999999999
Q ss_pred CCCCCCCCCCC--------ceecchhhhcCCCCCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCCCCCHHHHHH
Q 008860 220 RPFIPDIPGSE--------YAIDSDAALDLPSKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRDF 291 (551)
Q Consensus 220 ~p~~p~i~g~~--------~~~~~~~~~~~~~~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~ 291 (551)
+.+-.++||.+ ++-+++..+ ..+|+|+|||||++|+|.|-.|+-.-..||+++-.+.+-. -+.
T Consensus 324 rWRn~nvPGE~e~rnKGVayCPHCDGPL---F~gK~VAVIGGGNSGvEAAIDLAGiv~hVtllEF~~eLkA------D~V 394 (520)
T COG3634 324 RWRNMNVPGEDEYRNKGVAYCPHCDGPL---FKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPELKA------DAV 394 (520)
T ss_pred chhcCCCCchHHHhhCCeeeCCCCCCcc---cCCceEEEECCCcchHHHHHhHHhhhheeeeeecchhhhh------HHH
Confidence 99988899854 233455443 2479999999999999999999988889999987655321 234
Q ss_pred HHHHHHh-cCcEEEcCcccEEEEEcCCceEEEEEC---CCe--EEEeeEEEEecCcCCCCCCCCccccCeeecCCCCeEe
Q 008860 292 VAEQMSL-RGIEFHTEESPQAILKSTDGSLSVKTN---KGT--VDGFSHVMFATGRRPNTKNLGLEKVGVKMTKNGAIEV 365 (551)
Q Consensus 292 l~~~l~~-~Gv~i~~~~~v~~i~~~~~~~~~V~~~---~G~--~i~~d~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~v 365 (551)
+++.|.. .+++++.|...++|..+++++..++.. +|+ .++-+-|++-+|.-||+++ ++.. ++++++|-|.|
T Consensus 395 Lq~kl~sl~Nv~ii~na~Ttei~Gdg~kV~Gl~Y~dr~sge~~~l~LeGvFVqIGL~PNT~W--Lkg~-vel~~rGEIiv 471 (520)
T COG3634 395 LQDKLRSLPNVTIITNAQTTEVKGDGDKVTGLEYRDRVSGEEHHLELEGVFVQIGLLPNTEW--LKGA-VELNRRGEIIV 471 (520)
T ss_pred HHHHHhcCCCcEEEecceeeEEecCCceecceEEEeccCCceeEEEeeeeEEEEecccChhH--hhch-hhcCcCccEEE
Confidence 5555554 489999999999999887765555553 333 4667789999999999998 5665 88999999999
Q ss_pred CCCCCCCCCcEEEeCcCCCC-CCChHHHHHhHHHHHHHHc
Q 008860 366 DEYSGTAVPSIWAVGDVTDR-INLTPVALMEGGALAKTLF 404 (551)
Q Consensus 366 d~~~~t~~~~vya~GD~~~~-~~~~~~A~~~g~~aa~~i~ 404 (551)
|....||+|+|||+|||+.. ++....|+-+|..|+-..+
T Consensus 472 D~~g~TsvpGvFAAGD~T~~~yKQIIIamG~GA~AaL~AF 511 (520)
T COG3634 472 DARGETNVPGVFAAGDCTTVPYKQIIIAMGEGAKASLSAF 511 (520)
T ss_pred ecCCCcCCCceeecCcccCCccceEEEEecCcchhhhhhh
Confidence 99999999999999999986 4666677777877776655
|
|
| >KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.1e-25 Score=216.73 Aligned_cols=301 Identities=20% Similarity=0.285 Sum_probs=215.7
Q ss_pred CCCccEEEECCChHHHHHHHHHHh--CCCcEEEEc----cCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhh
Q 008860 70 HYDFDLFTIGAGSGGVRASRFAAN--FGASVAICE----LPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDE 143 (551)
Q Consensus 70 ~~~~dVvIIGgG~aGl~aA~~l~~--~G~~V~liE----~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~ 143 (551)
..+...+|||+|.+..+++..... .+.+|.+|. .||++++....-+.-| .|. ....
T Consensus 176 p~hvp~liigggtaAfaa~rai~s~da~A~vl~iseepelPYmRPPLSKELW~~~-------dpn-----------~~k~ 237 (659)
T KOG1346|consen 176 PKHVPYLIIGGGTAAFAAFRAIKSNDATAKVLMISEEPELPYMRPPLSKELWWYG-------DPN-----------SAKK 237 (659)
T ss_pred cccCceeEEcCCchhhhcccccccCCCCceEEeeccCccCcccCCCcchhceecC-------CCC-----------hhhh
Confidence 346778999999998877766654 678899986 7888866554332111 111 1111
Q ss_pred ccCCCcc-------cC-CCCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEeE-EEEecC--CEEEE-cCEEEEeC
Q 008860 144 SNGFGWK-------YG-TEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIEGR-GKIVDP--HTVDV-DGKLYSAR 211 (551)
Q Consensus 144 ~~~~g~~-------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~i~~--~~v~v-~g~~~~~d 211 (551)
+..-.|. +. ....++..++- ...+-||.+..|. +..++. +.|.+ ||.+|.||
T Consensus 238 lrfkqwsGkeRsiffepd~FfvspeDLp----------------~~~nGGvAvl~G~kvvkid~~d~~V~LnDG~~I~Yd 301 (659)
T KOG1346|consen 238 LRFKQWSGKERSIFFEPDGFFVSPEDLP----------------KAVNGGVAVLRGRKVVKIDEEDKKVILNDGTTIGYD 301 (659)
T ss_pred eeecccCCccceeEecCCcceeChhHCc----------------ccccCceEEEeccceEEeecccCeEEecCCcEeehh
Confidence 1111111 00 00111111111 1234488898884 555654 34444 88999999
Q ss_pred eEEEcCCCCCCCCC-CCCC--------CceecchhhhcCCC---CCCeEEEEcCcHHHHHHHHHHHhC----CCeEEEEe
Q 008860 212 HILISVGGRPFIPD-IPGS--------EYAIDSDAALDLPS---KPEKIAIVGGGYIALEFAGIFSGL----TSEVHVFI 275 (551)
Q Consensus 212 ~lviAtG~~p~~p~-i~g~--------~~~~~~~~~~~~~~---~~~~vvViG~G~~g~e~a~~l~~~----g~~Vtlv~ 275 (551)
+++||||.+|...+ +... -.+....++..+++ ..++|.|||+|++|.|+|..|.+. |.+|+-+.
T Consensus 302 kcLIATG~~Pk~l~~~~~A~~evk~kit~fr~p~DF~rlek~~aek~siTIiGnGflgSELacsl~rk~r~~g~eV~QvF 381 (659)
T KOG1346|consen 302 KCLIATGVRPKKLQVFEEASEEVKQKITYFRYPADFKRLEKGLAEKQSITIIGNGFLGSELACSLKRKYRNEGVEVHQVF 381 (659)
T ss_pred heeeecCcCcccchhhhhcCHHhhhheeEEecchHHHHHHHhhhhcceEEEEcCcchhhhHHHHHHHhhhccCcEEEEee
Confidence 99999999997554 2221 13455666665543 247999999999999999998764 67887665
Q ss_pred ecCccCCC-CCHHHHHHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCcCCCCCCCCccccC
Q 008860 276 RQKKVLRG-FDEDIRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNTKNLGLEKVG 354 (551)
Q Consensus 276 ~~~~~l~~-~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~~~~l~l~~~g 354 (551)
.....+.. +++-++++-.+.+++.||.++.|..|.++.....+ +.+.++||.++..|+||+|+|..||+++ ++..|
T Consensus 382 ~Ek~nm~kiLPeyls~wt~ekir~~GV~V~pna~v~sv~~~~~n-l~lkL~dG~~l~tD~vVvavG~ePN~el--a~~sg 458 (659)
T KOG1346|consen 382 EEKYNMEKILPEYLSQWTIEKIRKGGVDVRPNAKVESVRKCCKN-LVLKLSDGSELRTDLVVVAVGEEPNSEL--AEASG 458 (659)
T ss_pred cccCChhhhhHHHHHHHHHHHHHhcCceeccchhhhhhhhhccc-eEEEecCCCeeeeeeEEEEecCCCchhh--ccccc
Confidence 54444444 67778888899999999999999999999877666 7899999999999999999999999998 78889
Q ss_pred eeecCC-CCeEeCCCCCCCCCcEEEeCcCCCC---------CCChHHHHHhHHHHHHHHcCCCC
Q 008860 355 VKMTKN-GAIEVDEYSGTAVPSIWAVGDVTDR---------INLTPVALMEGGALAKTLFQAEP 408 (551)
Q Consensus 355 l~~~~~-G~i~vd~~~~t~~~~vya~GD~~~~---------~~~~~~A~~~g~~aa~~i~g~~~ 408 (551)
+++|++ |++.||..|+.. .|||++||++.. ...+..|.-.||.|++||.|-..
T Consensus 459 LeiD~~lGGfrvnaeL~ar-~NvwvAGdaacF~D~~LGrRRVehhdhavvSGRLAGENMtgAak 521 (659)
T KOG1346|consen 459 LEIDEKLGGFRVNAELKAR-ENVWVAGDAACFEDGVLGRRRVEHHDHAVVSGRLAGENMTGAAK 521 (659)
T ss_pred ceeecccCcEEeeheeecc-cceeeecchhhhhcccccceeccccccceeeceecccccccccC
Confidence 999875 889999999864 899999999874 24566789999999999998554
|
|
| >TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.9e-24 Score=245.86 Aligned_cols=272 Identities=18% Similarity=0.124 Sum_probs=184.3
Q ss_pred CCccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhhccCCCcc
Q 008860 71 YDFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDESNGFGWK 150 (551)
Q Consensus 71 ~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~ 150 (551)
..+||+||||||||++||.+|++.|++|+|||+ ...+||.+.... ..
T Consensus 162 ~~~dVvIIGaGPAGLaAA~~aar~G~~V~liD~---------~~~~GG~~~~~~------------------------~~ 208 (985)
T TIGR01372 162 AHCDVLVVGAGPAGLAAALAAARAGARVILVDE---------QPEAGGSLLSEA------------------------ET 208 (985)
T ss_pred ccCCEEEECCCHHHHHHHHHHHhCCCcEEEEec---------CCCCCCeeeccc------------------------cc
Confidence 468999999999999999999999999999993 445777753211 00
Q ss_pred cCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhC-CeEEEEeE-EEEecCC-EEEE------------c----C--EEEE
Q 008860 151 YGTEPQHDWSTLIANKNAELQRLTGIYKNILINA-GITLIEGR-GKIVDPH-TVDV------------D----G--KLYS 209 (551)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~-~~~i~~~-~v~v------------~----g--~~~~ 209 (551)
.+..+..++... ....+... ++++..++ +..+... .+.. + + ..+.
T Consensus 209 ---~~g~~~~~~~~~-----------~~~~l~~~~~v~v~~~t~V~~i~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~i~ 274 (985)
T TIGR01372 209 ---IDGKPAADWAAA-----------TVAELTAMPEVTLLPRTTAFGYYDHNTVGALERVTDHLDAPPKGVPRERLWRIR 274 (985)
T ss_pred ---cCCccHHHHHHH-----------HHHHHhcCCCcEEEcCCEEEEEecCCeEEEEEEeeeccccccCCccccceEEEE
Confidence 001111111111 11122223 47776542 3222221 1100 0 1 2689
Q ss_pred eCeEEEcCCCCCCCCCCCCCCc--eecchhhh---cC-C-CCCCeEEEEcCcHHHHHHHHHHHhCCC-eEEEEeecCccC
Q 008860 210 ARHILISVGGRPFIPDIPGSEY--AIDSDAAL---DL-P-SKPEKIAIVGGGYIALEFAGIFSGLTS-EVHVFIRQKKVL 281 (551)
Q Consensus 210 ~d~lviAtG~~p~~p~i~g~~~--~~~~~~~~---~~-~-~~~~~vvViG~G~~g~e~a~~l~~~g~-~Vtlv~~~~~~l 281 (551)
||+||||||+.++.|++||.+. +++..... .. . ..+++++|||+|++++|+|..|.+.|. .|++++..+.+
T Consensus 275 a~~VILATGa~~r~~pipG~~~pgV~~~~~~~~~l~~~~~~~gk~VvViG~G~~g~e~A~~L~~~G~~vV~vv~~~~~~- 353 (985)
T TIGR01372 275 AKRVVLATGAHERPLVFANNDRPGVMLAGAARTYLNRYGVAPGKRIVVATNNDSAYRAAADLLAAGIAVVAIIDARADV- 353 (985)
T ss_pred cCEEEEcCCCCCcCCCCCCCCCCCcEEchHHHHHHHhhCcCCCCeEEEECCCHHHHHHHHHHHHcCCceEEEEccCcch-
Confidence 9999999999999999998653 44443222 11 1 236899999999999999999999995 57888776543
Q ss_pred CCCCHHHHHHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEEC----CCeEEEeeEEEEecCcCCCCCCCCccccCee-
Q 008860 282 RGFDEDIRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTN----KGTVDGFSHVMFATGRRPNTKNLGLEKVGVK- 356 (551)
Q Consensus 282 ~~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~----~G~~i~~d~vi~a~G~~p~~~~l~l~~~gl~- 356 (551)
...+.+.|++.||+++.++.++++..++.. ..|++. ++++++||.|+++.|..|++++ +..++.+
T Consensus 354 -------~~~l~~~L~~~GV~i~~~~~v~~i~g~~~v-~~V~l~~~~g~~~~i~~D~V~va~G~~Pnt~L--~~~lg~~~ 423 (985)
T TIGR01372 354 -------SPEARAEARELGIEVLTGHVVAATEGGKRV-SGVAVARNGGAGQRLEADALAVSGGWTPVVHL--FSQRGGKL 423 (985)
T ss_pred -------hHHHHHHHHHcCCEEEcCCeEEEEecCCcE-EEEEEEecCCceEEEECCEEEEcCCcCchhHH--HHhcCCCe
Confidence 334667789999999999999999765432 334433 4567999999999999999987 4444433
Q ss_pred -ecCCCCeEeCCCCCCCCCcEEEeCcCCCCCCChHHHHHhHHHHHHHHc
Q 008860 357 -MTKNGAIEVDEYSGTAVPSIWAVGDVTDRINLTPVALMEGGALAKTLF 404 (551)
Q Consensus 357 -~~~~G~i~vd~~~~t~~~~vya~GD~~~~~~~~~~A~~~g~~aa~~i~ 404 (551)
.++.....+ -.|++|+||++||+++.. .+..|..+|+.||..++
T Consensus 424 ~~~~~~~~~~---~~t~v~gVyaaGD~~g~~-~~~~A~~eG~~Aa~~i~ 468 (985)
T TIGR01372 424 AWDAAIAAFL---PGDAVQGCILAGAANGLF-GLAAALADGAAAGAAAA 468 (985)
T ss_pred eeccccCcee---cCCCCCCeEEeeccCCcc-CHHHHHHHHHHHHHHHH
Confidence 332211111 137899999999999754 56679999999998874
|
This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms |
| >PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.6e-24 Score=231.26 Aligned_cols=274 Identities=22% Similarity=0.356 Sum_probs=188.8
Q ss_pred CCccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhhccCCCcc
Q 008860 71 YDFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDESNGFGWK 150 (551)
Q Consensus 71 ~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~ 150 (551)
...+|+|||+||+||++|..|++.|++|+++|+ ...+||.+.+ + +|. | .
T Consensus 136 ~g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~---------~~~~GG~l~~-g-ip~------------------~--~ 184 (564)
T PRK12771 136 TGKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEA---------GPKLGGMMRY-G-IPA------------------Y--R 184 (564)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEec---------CCCCCCeeee-c-CCC------------------c--c
Confidence 346899999999999999999999999999993 4567776431 1 120 0 0
Q ss_pred cCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEeEEEEecCCEEEEcCEEEEeCeEEEcCCCCC-CCCCCCCC
Q 008860 151 YGTEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIEGRGKIVDPHTVDVDGKLYSARHILISVGGRP-FIPDIPGS 229 (551)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~i~~~~v~v~g~~~~~d~lviAtG~~p-~~p~i~g~ 229 (551)
.. .++... ..+.+.+.|+++..+.....+ +..+.....||.+++|||+.. ..+.++|.
T Consensus 185 ------~~-~~~~~~-----------~l~~~~~~Gv~~~~~~~~~~~---~~~~~~~~~~D~Vi~AtG~~~~~~~~i~g~ 243 (564)
T PRK12771 185 ------LP-REVLDA-----------EIQRILDLGVEVRLGVRVGED---ITLEQLEGEFDAVFVAIGAQLGKRLPIPGE 243 (564)
T ss_pred ------CC-HHHHHH-----------HHHHHHHCCCEEEeCCEECCc---CCHHHHHhhCCEEEEeeCCCCCCcCCCCCC
Confidence 00 111111 112345668887765322111 111111235899999999875 34456764
Q ss_pred C--ceecchhhhc------CCCCCCeEEEEcCcHHHHHHHHHHHhCC-CeEEEEeecCcc-CCCCCHHHHHHHHHHHHhc
Q 008860 230 E--YAIDSDAALD------LPSKPEKIAIVGGGYIALEFAGIFSGLT-SEVHVFIRQKKV-LRGFDEDIRDFVAEQMSLR 299 (551)
Q Consensus 230 ~--~~~~~~~~~~------~~~~~~~vvViG~G~~g~e~a~~l~~~g-~~Vtlv~~~~~~-l~~~~~~~~~~l~~~l~~~ 299 (551)
+ .++..-+++. ....+++++|+|+|..+++.+..+.+++ .+|+++.+.+.. ++....+ + +.+.+.
T Consensus 244 ~~~gv~~~~~~l~~~~~~~~~~~gk~v~ViGgg~~a~d~a~~a~~lga~~v~ii~r~~~~~~~~~~~~----~-~~a~~~ 318 (564)
T PRK12771 244 DAAGVLDAVDFLRAVGEGEPPFLGKRVVVIGGGNTAMDAARTARRLGAEEVTIVYRRTREDMPAHDEE----I-EEALRE 318 (564)
T ss_pred ccCCcEEHHHHHHHhhccCCcCCCCCEEEECChHHHHHHHHHHHHcCCCEEEEEEecCcccCCCCHHH----H-HHHHHc
Confidence 3 1222222211 1234789999999999999999999988 679999887532 2222222 2 234567
Q ss_pred CcEEEcCcccEEEEEcCCceEEE-----EE----CC-------C--eEEEeeEEEEecCcCCCCCCCCccc-cCeeecCC
Q 008860 300 GIEFHTEESPQAILKSTDGSLSV-----KT----NK-------G--TVDGFSHVMFATGRRPNTKNLGLEK-VGVKMTKN 360 (551)
Q Consensus 300 Gv~i~~~~~v~~i~~~~~~~~~V-----~~----~~-------G--~~i~~d~vi~a~G~~p~~~~l~l~~-~gl~~~~~ 360 (551)
||++++++.+.++..++++.+.+ .. .+ | .++++|.||+|+|..|+..+ ++. .++. +++
T Consensus 319 GVki~~~~~~~~i~~~~~~~~~v~~~~~~~~~~~~~g~~~~~~g~~~~i~~D~Vi~A~G~~p~~~~--~~~~~gl~-~~~ 395 (564)
T PRK12771 319 GVEINWLRTPVEIEGDENGATGLRVITVEKMELDEDGRPSPVTGEEETLEADLVVLAIGQDIDSAG--LESVPGVE-VGR 395 (564)
T ss_pred CCEEEecCCcEEEEcCCCCEEEEEEEEEEecccCCCCCeeecCCceEEEECCEEEECcCCCCchhh--hhhccCcc-cCC
Confidence 99999999999998765543222 21 12 2 36999999999999999877 343 5677 778
Q ss_pred CCeEeCC-CCCCCCCcEEEeCcCCCCCCChHHHHHhHHHHHHHHc
Q 008860 361 GAIEVDE-YSGTAVPSIWAVGDVTDRINLTPVALMEGGALAKTLF 404 (551)
Q Consensus 361 G~i~vd~-~~~t~~~~vya~GD~~~~~~~~~~A~~~g~~aa~~i~ 404 (551)
|+|.||+ +++|++|+|||+||++..+.++..|+.||+.||.+|.
T Consensus 396 G~i~vd~~~~~ts~~~Vfa~GD~~~g~~~v~~Av~~G~~aA~~i~ 440 (564)
T PRK12771 396 GVVQVDPNFMMTGRPGVFAGGDMVPGPRTVTTAIGHGKKAARNID 440 (564)
T ss_pred CCEEeCCCCccCCCCCEEeccCcCCCchHHHHHHHHHHHHHHHHH
Confidence 9999998 7889999999999999888888999999999999873
|
|
| >PLN02172 flavin-containing monooxygenase FMO GS-OX | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.1e-23 Score=217.97 Aligned_cols=300 Identities=18% Similarity=0.176 Sum_probs=185.0
Q ss_pred CCccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCeeccCCCc--------chHH-----HHHh--h
Q 008860 71 YDFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCV--------PKKL-----LVYA--S 135 (551)
Q Consensus 71 ~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~--------p~~~-----l~~~--~ 135 (551)
..++|+|||||++||+||++|++.|++|+++|+ ...+||+|...... |... ++.. .
T Consensus 9 ~~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~---------~~~vGG~W~~~~~~~~d~~~~~~~~~~~~s~~Y~~L~t 79 (461)
T PLN02172 9 NSQHVAVIGAGAAGLVAARELRREGHTVVVFER---------EKQVGGLWVYTPKSESDPLSLDPTRSIVHSSVYESLRT 79 (461)
T ss_pred CCCCEEEECCcHHHHHHHHHHHhcCCeEEEEec---------CCCCcceeecCCCcCCCccccCCCCcccchhhhhhhhc
Confidence 357999999999999999999999999999994 56799999764321 1110 1100 0
Q ss_pred hhhhHhhhccCCCcccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCeE--EEE-eEEEEecC----CEEEE-c-C-
Q 008860 136 KFSHEFDESNGFGWKYGTEPQHDWSTLIANKNAELQRLTGIYKNILINAGIT--LIE-GRGKIVDP----HTVDV-D-G- 205 (551)
Q Consensus 136 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~~-~~~~~i~~----~~v~v-~-g- 205 (551)
..+.....+..|.+.............+....+ +...++...+..++. +.. .++..++. +.+.+ + +
T Consensus 80 n~p~~~m~f~dfp~~~~~~~~~~~~~~fp~~~e----v~~YL~~~a~~fgl~~~I~~~t~V~~V~~~~~~w~V~~~~~~~ 155 (461)
T PLN02172 80 NLPRECMGYRDFPFVPRFDDESRDSRRYPSHRE----VLAYLQDFAREFKIEEMVRFETEVVRVEPVDGKWRVQSKNSGG 155 (461)
T ss_pred cCCHhhccCCCCCCCcccccccCcCCCCCCHHH----HHHHHHHHHHHcCCcceEEecCEEEEEeecCCeEEEEEEcCCC
Confidence 111222223333332110000000000111111 222233344444554 222 34444432 23443 1 1
Q ss_pred E--EEEeCeEEEcCC--CCCCCCCCCCCCc----eecchhhhcCC-CCCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEee
Q 008860 206 K--LYSARHILISVG--GRPFIPDIPGSEY----AIDSDAALDLP-SKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIR 276 (551)
Q Consensus 206 ~--~~~~d~lviAtG--~~p~~p~i~g~~~----~~~~~~~~~~~-~~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~ 276 (551)
. +..||+||+||| +.|++|++||.+. .+++.+..... ..+|+|+|||+|.+|+|+|..|...+.+|+++.|
T Consensus 156 ~~~~~~~d~VIvAtG~~~~P~~P~ipG~~~f~G~~iHs~~yr~~~~~~gk~VvVVG~G~Sg~diA~~L~~~a~~V~l~~r 235 (461)
T PLN02172 156 FSKDEIFDAVVVCNGHYTEPNVAHIPGIKSWPGKQIHSHNYRVPDPFKNEVVVVIGNFASGADISRDIAKVAKEVHIASR 235 (461)
T ss_pred ceEEEEcCEEEEeccCCCCCcCCCCCCcccCCceEEEecccCCccccCCCEEEEECCCcCHHHHHHHHHHhCCeEEEEEe
Confidence 1 457999999999 7899999999752 23333333222 2478999999999999999999999999999999
Q ss_pred cCccCCCCCHHHHHHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCcCCCCCCCCccccCee
Q 008860 277 QKKVLRGFDEDIRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNTKNLGLEKVGVK 356 (551)
Q Consensus 277 ~~~~l~~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~~~~l~l~~~gl~ 356 (551)
...... .+.+......+..+..|..+..+ + .|.+.||+.+++|.||+|||+.++..+| +.
T Consensus 236 ~~~~~~----------~~~~~~~~~~v~~~~~I~~~~~~--g--~V~f~DG~~~~~D~Ii~~TGy~~~~pfL--~~---- 295 (461)
T PLN02172 236 ASESDT----------YEKLPVPQNNLWMHSEIDTAHED--G--SIVFKNGKVVYADTIVHCTGYKYHFPFL--ET---- 295 (461)
T ss_pred eccccc----------cccCcCCCCceEECCcccceecC--C--eEEECCCCCccCCEEEECCcCCcccccc--Cc----
Confidence 764211 00111223445556677766532 2 2888999999999999999999999884 32
Q ss_pred ecCCCCeEeCCCC------C---CC-CCcEEEeCcCCCCCCChHHHHHhHHHHHHHHcCCC
Q 008860 357 MTKNGAIEVDEYS------G---TA-VPSIWAVGDVTDRINLTPVALMEGGALAKTLFQAE 407 (551)
Q Consensus 357 ~~~~G~i~vd~~~------~---t~-~~~vya~GD~~~~~~~~~~A~~~g~~aa~~i~g~~ 407 (551)
.|.+.+|++. + .. .|+++.+|=... ......+..|++.+|.-+.|..
T Consensus 296 ---~~~i~v~~~~v~~Ly~~~f~~~~~p~LafiG~~~~-~~~f~~~E~Qa~~~a~v~sG~~ 352 (461)
T PLN02172 296 ---NGYMRIDENRVEPLYKHVFPPALAPGLSFIGLPAM-GIQFVMFEIQSKWVAAVLSGRV 352 (461)
T ss_pred ---ccceeeCCCcchhhHHhhcCCCCCCcEEEEecccc-ccCchhHHHHHHHHHHHHcCCC
Confidence 2344444321 1 23 489999996533 3345678899999999998854
|
|
| >PF02852 Pyr_redox_dim: Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain; InterPro: IPR004099 This entry represents a dimerisation domain that is usually found at the C-terminal of both class I and class II oxidoreductases, as well as in NADH oxidases and peroxidases [, , ] | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.3e-23 Score=174.74 Aligned_cols=109 Identities=33% Similarity=0.513 Sum_probs=102.8
Q ss_pred ccEEEecCCceEEeeCCHHHHHhcCCCeEEEEeeccCcccccccCCCcEEEEEEEECCCCeEEEEEEECCChhHHHHHHH
Q 008860 416 VPSAVFSQPPIGQVGLSEEQAIQEYGDIDVFTANFRPLKATLSGLPDRIFMKLVLCAKTNKVLGLHMCGEDAPEIVQGFA 495 (551)
Q Consensus 416 ~~~~~~~~~~~~~vGl~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~~~~~~ilG~~~~g~~~~e~i~~~~ 495 (551)
+|+++|++|++++||+||+||++.+.++.+...++....++...+...+|+||++|++||+|||+|++|+++.|+|+.++
T Consensus 1 vP~~vft~p~ia~vGlte~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~Kli~d~~t~~IlGa~~vg~~a~e~I~~~~ 80 (110)
T PF02852_consen 1 VPTVVFTDPEIASVGLTEEEARKQGIDYEVVTVPFKSNDRARYYPETEGFVKLIFDKKTGRILGAQIVGPNASELINELA 80 (110)
T ss_dssp CEEEEESSSEEEEEES-HHHHHHHTSGEEEEEEEEGGEHHHHHTTTTEEEEEEEEETTTTBEEEEEEEETTHHHHHHHHH
T ss_pred CCEEEECCCceEEEccCHHHHHhccCceeeeeecccccchhcccCCcceeeEEEEEeeccceeeeeeecCchHHHHHHHH
Confidence 58999999999999999999999988899999999988888878889999999999999999999999999999999999
Q ss_pred HHHHCCCCHHHHccCcccCCCchHHHHHH
Q 008860 496 VAVKAGLTKADFDATVGVHPTAAEEFVTL 524 (551)
Q Consensus 496 ~~i~~~~~~~~l~~~~~~~pt~~e~~~~~ 524 (551)
++|++++|++++.+.+++|||++|++.++
T Consensus 81 ~ai~~~~t~~~l~~~~~~~Pt~se~~~~a 109 (110)
T PF02852_consen 81 LAIQNGLTVEDLADDIFYHPTFSEAIQEA 109 (110)
T ss_dssp HHHHTTSBHHHHHTSBSSSTSTGHHHHHH
T ss_pred HHHHcCCCHHHHhCCeeeCCChhHHHHHh
Confidence 99999999999999999999999998764
|
; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0045454 cell redox homeostasis, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3II4_B 2A8X_A 2BC0_B 2BC1_B 2W0H_A 2X50_B 2JK6_A 2YAU_A 2EQ9_E 2EQ6_B .... |
| >PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes [] | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.1e-20 Score=200.04 Aligned_cols=306 Identities=18% Similarity=0.234 Sum_probs=161.3
Q ss_pred ccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCeeccC-----CCcchHHHHH--hhhhhhHhhhcc
Q 008860 73 FDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLR-----GCVPKKLLVY--ASKFSHEFDESN 145 (551)
Q Consensus 73 ~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~~~~-----g~~p~~~l~~--~~~~~~~~~~~~ 145 (551)
.+|+|||||++||++|..|.+.|++++++|+ .+.+||.|... |+-+ ++. .......+..+.
T Consensus 2 krVaVIGaG~sGL~a~k~l~e~g~~~~~fE~---------~~~iGG~W~~~~~~~~g~~~---~y~sl~~n~sk~~~~fs 69 (531)
T PF00743_consen 2 KRVAVIGAGPSGLAAAKNLLEEGLEVTCFEK---------SDDIGGLWRYTENPEDGRSS---VYDSLHTNTSKEMMAFS 69 (531)
T ss_dssp -EEEEE--SHHHHHHHHHHHHTT-EEEEEES---------SSSSSGGGCHSTTCCCSEGG---GSTT-B-SS-GGGSCCT
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCeEEec---------CCCCCccCeeCCcCCCCccc---cccceEEeeCchHhcCC
Confidence 4799999999999999999999999999994 78899999643 2211 000 011223334455
Q ss_pred CCCcccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHH--hCCeEEEEeEEEEec------CCEEEE--cC--EEEEeCeE
Q 008860 146 GFGWKYGTEPQHDWSTLIANKNAELQRLTGIYKNILI--NAGITLIEGRGKIVD------PHTVDV--DG--KLYSARHI 213 (551)
Q Consensus 146 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~i~------~~~v~v--~g--~~~~~d~l 213 (551)
.|.++.+........++.++.+.+.+.+. +.+ +.+.++.. +...+ .+.+.+ ++ ++..||+|
T Consensus 70 dfp~p~~~p~f~~~~~v~~Yl~~Ya~~f~-----L~~~I~fnt~V~~--v~~~~d~~~~~~W~V~~~~~g~~~~~~fD~V 142 (531)
T PF00743_consen 70 DFPFPEDYPDFPSHSEVLEYLESYAEHFG-----LRKHIRFNTEVVS--VERDPDFSATGKWEVTTENDGKEETEEFDAV 142 (531)
T ss_dssp TS-HCCCCSSSEBHHHHHHHHHHHHHHTT-----GGGGEETSEEEEE--EEEETTTT-ETEEEEEETTTTEEEEEEECEE
T ss_pred CcCCCCCCCCCCCHHHHHHHHHHHHhhhC-----CcceEEEccEEeE--eeeccccCCCceEEEEeecCCeEEEEEeCeE
Confidence 55554333333344555555444443321 111 11222222 22222 134444 33 34579999
Q ss_pred EEcCC--CCCCCCC--CCCCCc----eecchhhhcCCC-CCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCcc-CCC
Q 008860 214 LISVG--GRPFIPD--IPGSEY----AIDSDAALDLPS-KPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKV-LRG 283 (551)
Q Consensus 214 viAtG--~~p~~p~--i~g~~~----~~~~~~~~~~~~-~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~-l~~ 283 (551)
|+||| +.|++|. +||++. ++++.+..+.+. .+|+|+|||+|.+|+++|..+.+...+|++..|+..+ ++.
T Consensus 143 vvatG~~~~P~~P~~~~~G~e~F~G~i~HS~~yr~~~~f~gKrVlVVG~g~Sg~DIa~el~~~a~~v~~s~R~~~wv~pr 222 (531)
T PF00743_consen 143 VVATGHFSKPNIPEPSFPGLEKFKGEIIHSKDYRDPEPFKGKRVLVVGGGNSGADIAVELSRVAKKVYLSTRRGAWVLPR 222 (531)
T ss_dssp EEEE-SSSCESB-----CTGGGHCSEEEEGGG--TGGGGTTSEEEEESSSHHHHHHHHHHTTTSCCEEEECC--------
T ss_pred EEcCCCcCCCCCChhhhhhhhcCCeeEEccccCcChhhcCCCEEEEEeCCHhHHHHHHHHHHhcCCeEEEEecccccccc
Confidence 99999 6688885 899763 566666554332 4799999999999999999999999999998887543 221
Q ss_pred CC-----------------------HHHHHHH-HHHH--------------------------------HhcCcEEEcCc
Q 008860 284 FD-----------------------EDIRDFV-AEQM--------------------------------SLRGIEFHTEE 307 (551)
Q Consensus 284 ~~-----------------------~~~~~~l-~~~l--------------------------------~~~Gv~i~~~~ 307 (551)
.. ..+.+.+ .+.+ ....|.+. .
T Consensus 223 ~~~~G~P~D~~~~~R~~~~l~~~lp~~~~~~~~~~~l~~~~~~~~~gl~p~~~~~~~~~~ind~l~~~i~~G~i~vk--~ 300 (531)
T PF00743_consen 223 YWDNGYPFDMVFSTRFSSFLQKNLPESLSNWLLEKKLNKRFDHENYGLKPKHRFFSQHPTINDELPNRIRSGRIKVK--P 300 (531)
T ss_dssp ----------------------------------------------------------------------------E--E
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc--c
Confidence 10 0011111 0011 11111111 1
Q ss_pred ccEEEEEcCCceEEEEECCCeEE-EeeEEEEecCcCCCCCCCCccccCeeecCCCCeEeCCCC---CCCCCcEEEeCcCC
Q 008860 308 SPQAILKSTDGSLSVKTNKGTVD-GFSHVMFATGRRPNTKNLGLEKVGVKMTKNGAIEVDEYS---GTAVPSIWAVGDVT 383 (551)
Q Consensus 308 ~v~~i~~~~~~~~~V~~~~G~~i-~~d~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~---~t~~~~vya~GD~~ 383 (551)
.|.++. + -.|.+.||+++ ++|.||+|||+.....+| ++.-+.... +.+..-.++ +...|++..+|=+.
T Consensus 301 ~I~~~~--~---~~v~F~DGs~~e~vD~II~~TGY~~~fpFL--~~~~~~~~~-~~~~LYk~vfp~~~~~ptLafIG~~~ 372 (531)
T PF00743_consen 301 DIKRFT--E---NSVIFEDGSTEEDVDVIIFCTGYKFSFPFL--DESLIKVDD-NRVRLYKHVFPPNLDHPTLAFIGLVQ 372 (531)
T ss_dssp -EEEE---S---SEEEETTSEEEEE-SEEEE---EE---TTB---TTTT-S-S-SSSSEETTTEETETTSTTEEESS-SB
T ss_pred cccccc--c---cccccccccccccccccccccccccccccc--ccccccccc-cccccccccccccccccccccccccc
Confidence 233332 1 23678999875 699999999999988874 333233222 222222222 12458999999765
Q ss_pred CCCCChHHHHHhHHHHHHHHcCCC
Q 008860 384 DRINLTPVALMEGGALAKTLFQAE 407 (551)
Q Consensus 384 ~~~~~~~~A~~~g~~aa~~i~g~~ 407 (551)
......+.+..|++++++-+.|..
T Consensus 373 ~~g~~fp~~ElQArw~a~v~sG~~ 396 (531)
T PF00743_consen 373 PFGSIFPIFELQARWAARVFSGRV 396 (531)
T ss_dssp SSS-HHHHHHHHHHHHHHHHTTSS
T ss_pred cccccccccccccccccccccccc
Confidence 433445678999999999998854
|
Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A .... |
| >COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.4e-20 Score=192.22 Aligned_cols=280 Identities=24% Similarity=0.331 Sum_probs=193.8
Q ss_pred ccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhhccCCCcccC
Q 008860 73 FDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDESNGFGWKYG 152 (551)
Q Consensus 73 ~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~~~ 152 (551)
.+|.|||||||||++|..|++.|++|+++|+ ....||... +| +|...
T Consensus 124 ~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~---------~~~~GGll~-yG-IP~~k---------------------- 170 (457)
T COG0493 124 KKVAVIGAGPAGLAAADDLSRAGHDVTVFER---------VALDGGLLL-YG-IPDFK---------------------- 170 (457)
T ss_pred CEEEEECCCchHhhhHHHHHhCCCeEEEeCC---------cCCCceeEE-ec-Cchhh----------------------
Confidence 7899999999999999999999999999993 556666643 22 33100
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEeEEEEecCCEEEEcCEEEEeCeEEEcCCC-CCCCCCCCCCC-
Q 008860 153 TEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIEGRGKIVDPHTVDVDGKLYSARHILISVGG-RPFIPDIPGSE- 230 (551)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~i~~~~v~v~g~~~~~d~lviAtG~-~p~~p~i~g~~- 230 (551)
.-..+.+...+.+++.|+++..+..... .+++..-.-.||.++++||+ .|+..++||.+
T Consensus 171 ----------------l~k~i~d~~i~~l~~~Gv~~~~~~~vG~---~it~~~L~~e~Dav~l~~G~~~~~~l~i~g~d~ 231 (457)
T COG0493 171 ----------------LPKDILDRRLELLERSGVEFKLNVRVGR---DITLEELLKEYDAVFLATGAGKPRPLDIPGEDA 231 (457)
T ss_pred ----------------ccchHHHHHHHHHHHcCeEEEEcceECC---cCCHHHHHHhhCEEEEeccccCCCCCCCCCcCC
Confidence 0012222333566777999987642221 12222223457999999994 57777888864
Q ss_pred -ceecchhhhc------CC-----C----CCCeEEEEcCcHHHHHHHHHHHhCCC-eEEEEeecCcc--CCCCCHHHHHH
Q 008860 231 -YAIDSDAALD------LP-----S----KPEKIAIVGGGYIALEFAGIFSGLTS-EVHVFIRQKKV--LRGFDEDIRDF 291 (551)
Q Consensus 231 -~~~~~~~~~~------~~-----~----~~~~vvViG~G~~g~e~a~~l~~~g~-~Vtlv~~~~~~--l~~~~~~~~~~ 291 (551)
.++..-+++. +. . .+++++|||+|.++++++....+.|+ .|+.+.+...- ...++......
T Consensus 232 ~gv~~A~dfL~~~~~~~~~~~~~~~~~~~~gk~vvVIGgG~Ta~D~~~t~~r~Ga~~v~~~~~~~~~~~~~~~~~~~~~~ 311 (457)
T COG0493 232 KGVAFALDFLTRLNKEVLGDFAEDRTPPAKGKRVVVIGGGDTAMDCAGTALRLGAKSVTCFYREDRDDETNEWPTWAAQL 311 (457)
T ss_pred CcchHHHHHHHHHHHHHhcccccccCCCCCCCeEEEECCCCCHHHHHHHHhhcCCeEEEEeccccccccCCcccccchhh
Confidence 3433322221 11 1 23899999999999999999999998 67777532211 01122223455
Q ss_pred HHHHHHhcCcEEEcCcccEEEEEcCCceE-EEEE-----C---C-----------Ce--EEEeeEEEEecCcCCCCCCCC
Q 008860 292 VAEQMSLRGIEFHTEESPQAILKSTDGSL-SVKT-----N---K-----------GT--VDGFSHVMFATGRRPNTKNLG 349 (551)
Q Consensus 292 l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~-~V~~-----~---~-----------G~--~i~~d~vi~a~G~~p~~~~l~ 349 (551)
..+...+.|+...+.....++..++++.+ .+.+ . + |+ .+++|.|+.|+|+.++.....
T Consensus 312 ~~~~a~eeg~~~~~~~~~~~~~~~e~GrV~~~~~~~~~~~~~~~~~~r~~p~~v~gs~~~~~aD~v~~aig~~~~~~~~~ 391 (457)
T COG0493 312 EVRSAGEEGVERLPFVQPKAFIGNEGGRVTGVKFGRVEPGEYVDGWGRRGPVGVIGTEKTDAADTVILAIGFEGDATDGL 391 (457)
T ss_pred hhhhhhhcCCcccccCCceeEeecCCCcEeeeecccccccCcccccccccCccccCceEEehHHHHHHHhccCCCccccc
Confidence 66777888999999988888887665422 2221 1 1 22 578999999999988755421
Q ss_pred ccccCeeecCCCCeEeCCCC-CCCCCcEEEeCcCCCCCCChHHHHHhHHHHHHHHc
Q 008860 350 LEKVGVKMTKNGAIEVDEYS-GTAVPSIWAVGDVTDRINLTPVALMEGGALAKTLF 404 (551)
Q Consensus 350 l~~~gl~~~~~G~i~vd~~~-~t~~~~vya~GD~~~~~~~~~~A~~~g~~aa~~i~ 404 (551)
....++..+..|.+.+|+.+ +|+.|++||.||+..+..+...|+.+|+.+++.|-
T Consensus 392 ~~~~~~~~~~~g~i~~~~~~~~ts~~~vfa~gD~~~g~~~vv~ai~eGr~aak~i~ 447 (457)
T COG0493 392 LLEFGLKLDKRGRIKVDENLQQTSIPGVFAGGDAVRGAALVVWAIAEGREAAKAID 447 (457)
T ss_pred ccccccccCCCCceecccccccccCCCeeeCceeccchhhhhhHHhhchHHHHhhh
Confidence 23336778889999999998 99999999999999987888899999999998764
|
|
| >PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ] | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.7e-20 Score=173.68 Aligned_cols=179 Identities=36% Similarity=0.559 Sum_probs=120.5
Q ss_pred cEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhhccCCCcccCC
Q 008860 74 DLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDESNGFGWKYGT 153 (551)
Q Consensus 74 dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~~~~ 153 (551)
||||||||+||++||.+|++.+.+|+|+|+ .. +.+.+..|++...+............
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~----------~~--~~~~~~~~~~~~~~~~~~~~~~~~~~---------- 58 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGAKVLIIEK----------SP--GTPYNSGCIPSPLLVEIAPHRHEFLP---------- 58 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEESS----------SS--HHHHHHSHHHHHHHHHHHHHHHHHHH----------
T ss_pred CEEEEecHHHHHHHHHHHhcCCCeEEEEec----------cc--cccccccccccccccccccccccccc----------
Confidence 799999999999999999999999999982 11 23334455665554333221111000
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCeEE-EEeEEEEec--CCE-------EE--E--cCEEEEeCeEEEcCCC
Q 008860 154 EPQHDWSTLIANKNAELQRLTGIYKNILINAGITL-IEGRGKIVD--PHT-------VD--V--DGKLYSARHILISVGG 219 (551)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~i~--~~~-------v~--v--~g~~~~~d~lviAtG~ 219 (551)
.... .+.+.+...++++ +...+..++ ... +. . ++.++.||+||+|||+
T Consensus 59 ----------------~~~~--~~~~~~~~~~v~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~d~lviAtG~ 120 (201)
T PF07992_consen 59 ----------------ARLF--KLVDQLKNRGVEIRLNAKVVSIDPESKRVVCPAVTIQVVETGDGREIKYDYLVIATGS 120 (201)
T ss_dssp ----------------HHHG--HHHHHHHHHTHEEEHHHTEEEEEESTTEEEETCEEEEEEETTTEEEEEEEEEEEESTE
T ss_pred ----------------cccc--ccccccccceEEEeeccccccccccccccccCcccceeeccCCceEecCCeeeecCcc
Confidence 0000 1112223346666 223333332 221 11 1 4568999999999999
Q ss_pred CCCCCCCCCCC------ceecchhhhcCCCCCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCCCCCHHHHHHHH
Q 008860 220 RPFIPDIPGSE------YAIDSDAALDLPSKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRDFVA 293 (551)
Q Consensus 220 ~p~~p~i~g~~------~~~~~~~~~~~~~~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~ 293 (551)
.|+.|++||.+ .+.++.++......+++++|||
T Consensus 121 ~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG----------------------------------------- 159 (201)
T PF07992_consen 121 RPRTPNIPGEEVAYFLRGVDDAQRFLELLESPKRVAVVG----------------------------------------- 159 (201)
T ss_dssp EEEEESSTTTTTECBTTSEEHHHHHHTHSSTTSEEEEES-----------------------------------------
T ss_pred ccceeecCCCccccccccccccccccccccccccccccc-----------------------------------------
Confidence 99999999863 3456666666656667999999
Q ss_pred HHHHhcCcEEEcCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCcCCCCCCCCccccCeeecCCCCeEeCCCCCCCC
Q 008860 294 EQMSLRGIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNTKNLGLEKVGVKMTKNGAIEVDEYSGTAV 373 (551)
Q Consensus 294 ~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~t~~ 373 (551)
+.+|. +..+++++++|++.||+++||+.
T Consensus 160 ---------------------------------------------------~~~l~-~~~~~~~~~~g~i~vd~~~~t~~ 187 (201)
T PF07992_consen 160 ---------------------------------------------------TEFLA-EKLGVELDENGFIKVDENLQTSV 187 (201)
T ss_dssp ---------------------------------------------------TTTST-HHTTSTBTTTSSBEEBTTSBBSS
T ss_pred ---------------------------------------------------ccccc-ccccccccccccccccccccccc
Confidence 44432 78899999999999999999999
Q ss_pred CcEEEeCcCCCC
Q 008860 374 PSIWAVGDVTDR 385 (551)
Q Consensus 374 ~~vya~GD~~~~ 385 (551)
|||||+|||++.
T Consensus 188 ~~Iya~GD~a~~ 199 (201)
T PF07992_consen 188 PGIYAAGDCAGI 199 (201)
T ss_dssp TTEEE-GGGBEE
T ss_pred cccccccccccc
Confidence 999999999863
|
Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E .... |
| >PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.6e-17 Score=169.00 Aligned_cols=155 Identities=15% Similarity=0.120 Sum_probs=116.3
Q ss_pred EEEEcCcHHHHHHH-HHHH----hCCCeEEEEeecCccCCCCCHHHHHHHHHHHHhcCcEEEcCcccEEEEEcCCceEEE
Q 008860 248 IAIVGGGYIALEFA-GIFS----GLTSEVHVFIRQKKVLRGFDEDIRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSV 322 (551)
Q Consensus 248 vvViG~G~~g~e~a-~~l~----~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V 322 (551)
=.|++.+.+|+|.+ ..++ ++|.+|+++...+..++. .++.+.+.+.+++.|++++.+++|.+++.++++...+
T Consensus 218 ~~V~~PavIGle~a~~v~~~L~~~LG~~V~~vp~~ppslpG--~rL~~aL~~~l~~~Gv~I~~g~~V~~v~~~~~~V~~v 295 (422)
T PRK05329 218 EAVLLPAVLGLDDDAAVLAELEEALGCPVFELPTLPPSVPG--LRLQNALRRAFERLGGRIMPGDEVLGAEFEGGRVTAV 295 (422)
T ss_pred CEEEECceecCCChHHHHHHHHHHHCCCEEEeCCCCCCCch--HHHHHHHHHHHHhCCCEEEeCCEEEEEEEeCCEEEEE
Confidence 36789999999999 6665 569999999998887775 3788899999999999999999999998776553334
Q ss_pred EECCCe--EEEeeEEEEecCcCCCCCCC---------------------------------CccccCeeecCCCCeEeCC
Q 008860 323 KTNKGT--VDGFSHVMFATGRRPNTKNL---------------------------------GLEKVGVKMTKNGAIEVDE 367 (551)
Q Consensus 323 ~~~~G~--~i~~d~vi~a~G~~p~~~~l---------------------------------~l~~~gl~~~~~G~i~vd~ 367 (551)
...+|+ .+++|.||+|+|+.+...+. .+...|+.+|++ ...+|.
T Consensus 296 ~~~~g~~~~i~AD~VVLAtGrf~s~GL~a~~~~i~Epif~l~v~~~~~r~~w~~~~~~~~~p~~~~GV~~d~~-~~p~~~ 374 (422)
T PRK05329 296 WTRNHGDIPLRARHFVLATGSFFSGGLVAERDGIREPIFGLDVLQPADRADWYQRDFFAPHPFLQFGVATDAT-LRPLDS 374 (422)
T ss_pred EeeCCceEEEECCEEEEeCCCcccCceeccCCccccccCCCCCCCCCchhhhhhhhhccCCchhhcCceECCC-cCcccC
Confidence 444553 58999999999987654331 112334444442 344455
Q ss_pred CCCCCCCcEEEeCcCCCCCCCh------HHHHHhHHHHHHHHcC
Q 008860 368 YSGTAVPSIWAVGDVTDRINLT------PVALMEGGALAKTLFQ 405 (551)
Q Consensus 368 ~~~t~~~~vya~GD~~~~~~~~------~~A~~~g~~aa~~i~g 405 (551)
..++.++||||+|++.+++..+ -+|+..|-.|+++|..
T Consensus 375 ~g~~~~~nl~a~G~vl~g~d~~~~~~g~Gva~~ta~~a~~~~~~ 418 (422)
T PRK05329 375 QGGPVIENLYAAGAVLGGYDPIREGCGSGVALATALHAAEQIAE 418 (422)
T ss_pred CCCeeccceEEeeehhcCCchHHhCCCchhHHHHHHHHHHHHHH
Confidence 5556789999999999986433 3688899999998874
|
|
| >PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.3e-17 Score=179.93 Aligned_cols=280 Identities=18% Similarity=0.160 Sum_probs=158.0
Q ss_pred CCccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhh-hcc-CCC
Q 008860 71 YDFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFD-ESN-GFG 148 (551)
Q Consensus 71 ~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~-~~~-~~g 148 (551)
..++|+||||||||++||++|++.|++|+++|+ ....|+..... -|-+. ...+...+. ..+ .+|
T Consensus 382 tgKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~---------~~i~gl~~~~~--~~i~~---~~~~~~~L~er~p~~~G 447 (1028)
T PRK06567 382 TNYNILVTGLGPAGFSLSYYLLRSGHNVTAIDG---------LKITLLPFDVH--KPIKF---WHEYKNLLSERMPRGFG 447 (1028)
T ss_pred CCCeEEEECcCHHHHHHHHHHHhCCCeEEEEcc---------ccccccccccc--cccch---hhhhccchhhhccccCC
Confidence 357899999999999999999999999999992 11111110000 00000 000000000 000 011
Q ss_pred cccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHh-CCeEEEEeEEEEecCCEEEEcC-EEEEeCeEEEcCCC-CCCCCC
Q 008860 149 WKYGTEPQHDWSTLIANKNAELQRLTGIYKNILIN-AGITLIEGRGKIVDPHTVDVDG-KLYSARHILISVGG-RPFIPD 225 (551)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~i~~~~v~v~g-~~~~~d~lviAtG~-~p~~p~ 225 (551)
-.......+.|.. ..++. ....+.. .++.++.+.. ++ ..++.+. ....||.|+||||+ .|+.++
T Consensus 448 G~~~yGIp~R~~k------~~l~~----i~~il~~g~~v~~~~gv~--lG-~dit~edl~~~gyDAV~IATGA~kpr~L~ 514 (1028)
T PRK06567 448 GVAEYGITVRWDK------NNLDI----LRLILERNNNFKYYDGVA--LD-FNITKEQAFDLGFDHIAFCIGAGQPKVLD 514 (1028)
T ss_pred cccccCccccchH------HHHHH----HHHHHhcCCceEEECCeE--EC-ccCCHHHHhhcCCCEEEEeCCCCCCCCCC
Confidence 1000011122221 11111 1112221 2455555532 11 1122212 34679999999999 799999
Q ss_pred CCCCC--ceecchhhhcCC--------------CCCCeEEEEcCcHHHHHHHHHHHh-----------------------
Q 008860 226 IPGSE--YAIDSDAALDLP--------------SKPEKIAIVGGGYIALEFAGIFSG----------------------- 266 (551)
Q Consensus 226 i~g~~--~~~~~~~~~~~~--------------~~~~~vvViG~G~~g~e~a~~l~~----------------------- 266 (551)
+||.+ .+++..+++... ..+++|+|||||.+|+|+|.....
T Consensus 515 IPGeda~GV~sA~DfL~~l~~~~~~~~~~~~~~~~Gk~VVVIGGGnTAmD~ArtAlr~~~l~ve~~l~~~~~~~~~~~d~ 594 (1028)
T PRK06567 515 IENFEAKGVKTASDFLMTLQSGGAFLKNSNTNMVIRMPIAVIGGGLTSLDAATESLYYYKKQVEEFAKDYIEKDLTEEDK 594 (1028)
T ss_pred CCCccCCCeEEHHHHHHHHhhcccccccccCcccCCCCEEEEcCcHHHHHHHHHHHhhccchhhHHHHhhhhhhcccccH
Confidence 99965 466655543211 135799999999999999983221
Q ss_pred ----------------------------CCCeEEEEeecCcc-CCCCCHHHHHHHHHHHHhcCcEEEcCcccEEEEEcCC
Q 008860 267 ----------------------------LTSEVHVFIRQKKV-LRGFDEDIRDFVAEQMSLRGIEFHTEESPQAILKSTD 317 (551)
Q Consensus 267 ----------------------------~g~~Vtlv~~~~~~-l~~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~ 317 (551)
.|. |+++.|...- +|... --.+.+.+ ..+.||+++.+....+|..+++
T Consensus 595 eia~~f~~h~r~~g~~~~~~~v~~l~~~~G~-VtIvYRr~~~empA~~-~~~eEv~~-A~eEGV~f~~~~~P~~i~~d~~ 671 (1028)
T PRK06567 595 EIAEEFIAHAKLFKEAKNNEELRKVFNKLGG-ATVYYRGRLQDSPAYK-LNHEELIY-ALALGVDFKENMQPLRINVDKY 671 (1028)
T ss_pred HHHHHHHHHHHhhcchhccchhhhhhccCCc-eEEEecCChhhCCCCC-CCHHHHHH-HHHcCcEEEecCCcEEEEecCC
Confidence 233 8887776431 12110 00123333 3467999999999999987654
Q ss_pred c-eEEEEEC--------------C-C---------------eEEEeeEEEEecCcCCCCCCCCccccCeeecCCCCeEeC
Q 008860 318 G-SLSVKTN--------------K-G---------------TVDGFSHVMFATGRRPNTKNLGLEKVGVKMTKNGAIEVD 366 (551)
Q Consensus 318 ~-~~~V~~~--------------~-G---------------~~i~~d~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd 366 (551)
+ +..+++. + + .+++||.||+|+|..||+.+. +. +
T Consensus 672 g~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vi~A~G~~~~~~~~---------~~------~ 736 (1028)
T PRK06567 672 GHVESVEFENRNRHCEQSKTAWQSHEFGLTRLPRQCYAFPRNDIKTKTVIMAIGIENNTQFD---------ED------K 736 (1028)
T ss_pred CeEEEEEEEEEecccccccccccccccccCCcCcccCCCccccccCCEEEEecccCCccccc---------cc------c
Confidence 3 2223221 1 1 268999999999999999852 00 1
Q ss_pred CCCCCCCCcEEEeCcCCCCCCChHHHHHhHHHHHHHH
Q 008860 367 EYSGTAVPSIWAVGDVTDRINLTPVALMEGGALAKTL 403 (551)
Q Consensus 367 ~~~~t~~~~vya~GD~~~~~~~~~~A~~~g~~aa~~i 403 (551)
..+-++.+++|+- ....|+.+|+.++.+|
T Consensus 737 ~s~~~d~~~~f~G--------tvv~A~as~k~~~~~i 765 (1028)
T PRK06567 737 YSYFGDCNPKYSG--------SVVKALASSKEGYDAI 765 (1028)
T ss_pred cccccCCCCcccc--------HHHHHHHHHHhHHHHH
Confidence 1222345666654 5678999999999988
|
|
| >KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.74 E-value=9.2e-18 Score=157.39 Aligned_cols=201 Identities=14% Similarity=0.175 Sum_probs=130.8
Q ss_pred CCEEEE-cCEEEEeCeEEEcCCCCCCCCCCCCCCce---------e-------cchhhhcCCC------CCC-eEEEEcC
Q 008860 198 PHTVDV-DGKLYSARHILISVGGRPFIPDIPGSEYA---------I-------DSDAALDLPS------KPE-KIAIVGG 253 (551)
Q Consensus 198 ~~~v~v-~g~~~~~d~lviAtG~~p~~p~i~g~~~~---------~-------~~~~~~~~~~------~~~-~vvViG~ 253 (551)
.+++.+ +|++|+||++|||+|..-++-.|+|+... + ++..+.+.++ .|. .+-..|+
T Consensus 121 ~N~v~t~gg~eIsYdylviA~Giql~y~~IkGl~Eal~tP~VcSnYSpkyvdk~y~~~~~fk~GNAIfTfPntpiKCAGA 200 (446)
T KOG3851|consen 121 KNTVVTRGGEEISYDYLVIAMGIQLDYGKIKGLVEALDTPGVCSNYSPKYVDKVYKELMNFKKGNAIFTFPNTPIKCAGA 200 (446)
T ss_pred cCeEEccCCcEEeeeeEeeeeeceeccchhcChHhhccCCCcccccChHHHHHHHHHHHhccCCceEEecCCCccccCCC
Confidence 345555 78999999999999988777777775211 1 1122222221 111 1222344
Q ss_pred cHHHHHHHH-HHHhCCC--eEEEEe--ecCccCCCCCHHHHHHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEECC-C
Q 008860 254 GYIALEFAG-IFSGLTS--EVHVFI--RQKKVLRGFDEDIRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTNK-G 327 (551)
Q Consensus 254 G~~g~e~a~-~l~~~g~--~Vtlv~--~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~-G 327 (551)
-.-.+-++. ++++.|. ++.++. .-+.++. -..+.+.+++..+++.|++.....+.++..++...+--.+.+ |
T Consensus 201 PQKi~yise~y~Rk~gvRd~a~iiy~Tsl~~iFg--Vk~Y~~AL~k~~~~rni~vn~krnLiEV~~~~~~AvFe~L~kPG 278 (446)
T KOG3851|consen 201 PQKIMYISESYFRKRGVRDNANIIYNTSLPTIFG--VKHYADALEKVIQERNITVNYKRNLIEVRTNDRKAVFENLDKPG 278 (446)
T ss_pred chhhhhhhHHHHHHhCccccccEEEecCccceec--HHHHHHHHHHHHHhcceEeeeccceEEEeccchhhHHHhcCCCC
Confidence 444555554 5677775 344443 3333332 467889999999999999999989999987665411111222 4
Q ss_pred e--EEEeeEEEEecCcCCCCCCCCccccCeeecCCCCeEeCC-CCCC-CCCcEEEeCcCCCCC--CChHHHHHhHHHHHH
Q 008860 328 T--VDGFSHVMFATGRRPNTKNLGLEKVGVKMTKNGAIEVDE-YSGT-AVPSIWAVGDVTDRI--NLTPVALMEGGALAK 401 (551)
Q Consensus 328 ~--~i~~d~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~-~~~t-~~~~vya~GD~~~~~--~~~~~A~~~g~~aa~ 401 (551)
. +++++++.+...+++... +.++.+ .|..|++.||. .+|. ..||||++|||.+.| +++..+..|..++-+
T Consensus 279 ~t~ei~yslLHv~Ppms~pe~---l~~s~~-adktGfvdVD~~TlQs~kypNVFgiGDc~n~PnsKTaAAvaaq~~vv~~ 354 (446)
T KOG3851|consen 279 VTEEIEYSLLHVTPPMSTPEV---LANSDL-ADKTGFVDVDQSTLQSKKYPNVFGIGDCMNLPNSKTAAAVAAQSPVVDK 354 (446)
T ss_pred ceeEEeeeeeeccCCCCChhh---hhcCcc-cCcccceecChhhhccccCCCceeeccccCCCchhhHHHHHhcCchhhh
Confidence 3 688999988776665443 455554 47889999995 6774 899999999999986 455555678888888
Q ss_pred HHc
Q 008860 402 TLF 404 (551)
Q Consensus 402 ~i~ 404 (551)
|+.
T Consensus 355 nl~ 357 (446)
T KOG3851|consen 355 NLT 357 (446)
T ss_pred hHH
Confidence 864
|
|
| >KOG2755 consensus Oxidoreductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.1e-16 Score=146.32 Aligned_cols=180 Identities=26% Similarity=0.364 Sum_probs=116.4
Q ss_pred CCEEEE-cCEEEEeCeEEEcCCCCCCCCCCCCCC-ce---ecchhhhcC---CCCCCeEEEEcCcHHHHHHHHHHHhCCC
Q 008860 198 PHTVDV-DGKLYSARHILISVGGRPFIPDIPGSE-YA---IDSDAALDL---PSKPEKIAIVGGGYIALEFAGIFSGLTS 269 (551)
Q Consensus 198 ~~~v~v-~g~~~~~d~lviAtG~~p~~p~i~g~~-~~---~~~~~~~~~---~~~~~~vvViG~G~~g~e~a~~l~~~g~ 269 (551)
.+.+.+ +|..+.|++|+++||.+|.+- ..|.+ .+ .+.+....+ -...|+|.|+|.|-+++|++..+. +.
T Consensus 80 ehci~t~~g~~~ky~kKOG~tg~kPklq-~E~~n~~Iv~irDtDsaQllq~kl~kaK~VlilgnGgia~El~yElk--~~ 156 (334)
T KOG2755|consen 80 EHCIHTQNGEKLKYFKLCLCTGYKPKLQ-VEGINPKIVGIRDTDSAQLLQCKLVKAKIVLILGNGGIAMELTYELK--IL 156 (334)
T ss_pred cceEEecCCceeeEEEEEEecCCCccee-ecCCCceEEEEecCcHHHHHHHHHhhcceEEEEecCchhHHHHHHhh--cc
Confidence 345555 789999999999999999754 23222 22 232322222 234789999999999999999886 45
Q ss_pred eEEEEeecCccCCC-CCHHHHHHHHHHHHh-----------------------------cCcEEEcCcccEEE-------
Q 008860 270 EVHVFIRQKKVLRG-FDEDIRDFVAEQMSL-----------------------------RGIEFHTEESPQAI------- 312 (551)
Q Consensus 270 ~Vtlv~~~~~~l~~-~~~~~~~~l~~~l~~-----------------------------~Gv~i~~~~~v~~i------- 312 (551)
+|++....+.+... +++.+.+.+...|.. .|-..+..-....+
T Consensus 157 nv~w~ikd~~IsaTFfdpGaaef~~i~l~a~~s~~~iaiKh~q~iea~pk~~~n~vg~algpDw~s~~dl~g~~eseer~ 236 (334)
T KOG2755|consen 157 NVTWKIKDEGISATFFDPGAAEFYDINLRADRSTRIIAIKHFQYIEAFPKCEENNVGPALGPDWHSQIDLQGISESENRS 236 (334)
T ss_pred eeEEEecchhhhhcccCccHHHHhHhhhhcccccchhhhhhhhhhhhcCcccccCcccccCcchhhhcccccchhhhhhh
Confidence 78888877776655 666666554444310 00011110000110
Q ss_pred ------------EEcCCceEEEEE---CCC--eEEEeeEEEEecCcCCCCCCCCccccCeeecCCCCeEeCCCCCCCCCc
Q 008860 313 ------------LKSTDGSLSVKT---NKG--TVDGFSHVMFATGRRPNTKNLGLEKVGVKMTKNGAIEVDEYSGTAVPS 375 (551)
Q Consensus 313 ------------~~~~~~~~~V~~---~~G--~~i~~d~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~t~~~~ 375 (551)
...+. ..|.. ..| ..+.||.+++|+|..||.++ .-..-++..++|+++||+.|+|+.|+
T Consensus 237 l~~l~~~~~~~~d~~d~--~sv~~~~~ek~~~~qlt~d~ivSatgvtpn~e~--~~~~~lq~~edggikvdd~m~tslpd 312 (334)
T KOG2755|consen 237 LTYLRNCVITSTDTSDN--LSVHYMDKEKMADNQLTCDFIVSATGVTPNSEW--AMNKMLQITEDGGIKVDDAMETSLPD 312 (334)
T ss_pred hHHhhhheeeeccchhh--cccccccccccccceeeeeEEEeccccCcCceE--EecChhhhccccCeeehhhccccccc
Confidence 01111 11111 111 14779999999999999985 44455677788999999999999999
Q ss_pred EEEeCcCCC
Q 008860 376 IWAVGDVTD 384 (551)
Q Consensus 376 vya~GD~~~ 384 (551)
+||+||++.
T Consensus 313 vFa~gDvct 321 (334)
T KOG2755|consen 313 VFAAGDVCT 321 (334)
T ss_pred eeeecceec
Confidence 999999987
|
|
| >COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.72 E-value=5.6e-17 Score=169.03 Aligned_cols=186 Identities=21% Similarity=0.288 Sum_probs=116.9
Q ss_pred CCCccEEEECCChHHHHHHHHHHhCCCc-EEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhhccCCC
Q 008860 70 HYDFDLFTIGAGSGGVRASRFAANFGAS-VAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDESNGFG 148 (551)
Q Consensus 70 ~~~~dVvIIGgG~aGl~aA~~l~~~G~~-V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g 148 (551)
..++||+|||||++|+++|++|.+.|.. ++|+|| ....||+|... +.|+..+.. +.....++.+.
T Consensus 6 ~~~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek---------~~~~Gg~W~~~-ry~~l~~~~----p~~~~~~~~~p 71 (443)
T COG2072 6 ATHTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEK---------RDDVGGTWRYN-RYPGLRLDS----PKWLLGFPFLP 71 (443)
T ss_pred CCcccEEEECCCHHHHHHHHHHHHcCCCcEEEEEc---------cCCcCCcchhc-cCCceEECC----chheeccCCCc
Confidence 3468999999999999999999999998 999994 67899998542 111110000 01111222222
Q ss_pred cccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhCC----eEEEEe--EEEEec---CCEEEE-cCEE--EEeCeEEEc
Q 008860 149 WKYGTEPQHDWSTLIANKNAELQRLTGIYKNILINAG----ITLIEG--RGKIVD---PHTVDV-DGKL--YSARHILIS 216 (551)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----v~~~~~--~~~~i~---~~~v~v-~g~~--~~~d~lviA 216 (551)
+... .....+..+.. .+...+++++ +.+... .+...+ .+++.+ ++.. +.+|.||+|
T Consensus 72 ~~~~-~~~~~~~~~~~-----------y~~~~~~~y~~~~~i~~~~~v~~~~~~~~~~~w~V~~~~~~~~~~~a~~vV~A 139 (443)
T COG2072 72 FRWD-EAFAPFAEIKD-----------YIKDYLEKYGLRFQIRFNTRVEVADWDEDTKRWTVTTSDGGTGELTADFVVVA 139 (443)
T ss_pred cCCc-ccCCCcccHHH-----------HHHHHHHHcCceeEEEcccceEEEEecCCCCeEEEEEcCCCeeeEecCEEEEe
Confidence 2200 00011111111 1222233333 333222 122222 234555 3333 669999999
Q ss_pred CC--CCCCCCCCCCCCc----eecchhhhcC-CCCCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccC
Q 008860 217 VG--GRPFIPDIPGSEY----AIDSDAALDL-PSKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVL 281 (551)
Q Consensus 217 tG--~~p~~p~i~g~~~----~~~~~~~~~~-~~~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l 281 (551)
|| +.|++|.++|.+. .+++.+..+- .-.+|+|+|||+|++|++++..|.+.|.+||++.|++...
T Consensus 140 TG~~~~P~iP~~~G~~~f~g~~~HS~~~~~~~~~~GKrV~VIG~GaSA~di~~~l~~~ga~vt~~qRs~~~~ 211 (443)
T COG2072 140 TGHLSEPYIPDFAGLDEFKGRILHSADWPNPEDLRGKRVLVIGAGASAVDIAPELAEVGASVTLSQRSPPHI 211 (443)
T ss_pred ecCCCCCCCCCCCCccCCCceEEchhcCCCccccCCCeEEEECCCccHHHHHHHHHhcCCeeEEEecCCCce
Confidence 99 7899999999763 4455444443 3458999999999999999999999999999999987653
|
|
| >PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A | Back alignment and domain information |
|---|
Probab=99.72 E-value=4.3e-17 Score=153.11 Aligned_cols=185 Identities=24% Similarity=0.320 Sum_probs=99.2
Q ss_pred EEECCChHHHHHHHHHHhCCCc-EEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhhccCCCcccCCC
Q 008860 76 FTIGAGSGGVRASRFAANFGAS-VAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDESNGFGWKYGTE 154 (551)
Q Consensus 76 vIIGgG~aGl~aA~~l~~~G~~-V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~~~~~ 154 (551)
+|||||++||++|.+|.+.|.+ |+|||+ ...+||.|......+. +.... ... ..++.. ..
T Consensus 1 ~IIGaG~aGl~~a~~l~~~g~~~v~v~e~---------~~~~Gg~w~~~~~~~~--~~~~~-~~~-----~~~~~~--~~ 61 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLERGIDPVVVLER---------NDRPGGVWRRYYSYTR--LHSPS-FFS-----SDFGLP--DF 61 (203)
T ss_dssp EEE--SHHHHHHHHHHHHTT---EEEEES---------SSSSTTHHHCH-TTTT---BSSS-CCT-----GGSS----CC
T ss_pred CEECcCHHHHHHHHHHHhCCCCcEEEEeC---------CCCCCCeeEEeCCCCc--cccCc-ccc-----ccccCC--cc
Confidence 7999999999999999999999 999993 5579999875321110 00000 000 000000 00
Q ss_pred CCCChHHHHHHH----HHHHHHHHHHHHHHHHhCCeEEEEe-EEEEe----cCCEEEE-cCEEEEeCeEEEcCCC--CCC
Q 008860 155 PQHDWSTLIANK----NAELQRLTGIYKNILINAGITLIEG-RGKIV----DPHTVDV-DGKLYSARHILISVGG--RPF 222 (551)
Q Consensus 155 ~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~i----~~~~v~v-~g~~~~~d~lviAtG~--~p~ 222 (551)
..........+. ....+.+...++.+.++.++++..+ ++..+ +.+.+++ +++.+.+|+||+|||. .|+
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~i~~~~~V~~v~~~~~~w~v~~~~~~~~~a~~VVlAtG~~~~p~ 141 (203)
T PF13738_consen 62 ESFSFDDSPEWRWPHDFPSGEEVLDYLQEYAERFGLEIRFNTRVESVRRDGDGWTVTTRDGRTIRADRVVLATGHYSHPR 141 (203)
T ss_dssp CHSCHHHHHHHHHSBSSEBHHHHHHHHHHHHHHTTGGEETS--EEEEEEETTTEEEEETTS-EEEEEEEEE---SSCSB-
T ss_pred cccccccCCCCCCCcccCCHHHHHHHHHHHHhhcCcccccCCEEEEEEEeccEEEEEEEecceeeeeeEEEeeeccCCCC
Confidence 011111110000 0011222334444555556654433 22222 2345666 5568999999999994 889
Q ss_pred CCCCCC-C-CceecchhhhcCCC-CCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCc
Q 008860 223 IPDIPG-S-EYAIDSDAALDLPS-KPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKK 279 (551)
Q Consensus 223 ~p~i~g-~-~~~~~~~~~~~~~~-~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~ 279 (551)
.|+++| . ...+++.++.+... .+++|+|||+|.+|++++..|.+.|.+|+++.|++.
T Consensus 142 ~p~~~g~~~~~~~h~~~~~~~~~~~~k~V~VVG~G~SA~d~a~~l~~~g~~V~~~~R~~~ 201 (203)
T PF13738_consen 142 IPDIPGSAFRPIIHSADWRDPEDFKGKRVVVVGGGNSAVDIAYALAKAGKSVTLVTRSPI 201 (203)
T ss_dssp --S-TTGGCSEEEEGGG-STTGGCTTSEEEEE--SHHHHHHHHHHTTTCSEEEEEESS--
T ss_pred ccccccccccceEehhhcCChhhcCCCcEEEEcChHHHHHHHHHHHhhCCEEEEEecCCC
Confidence 999999 3 23455555544332 368999999999999999999999999999999874
|
... |
| >KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.5e-16 Score=169.09 Aligned_cols=276 Identities=21% Similarity=0.299 Sum_probs=172.2
Q ss_pred CccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhhccCCCccc
Q 008860 72 DFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDESNGFGWKY 151 (551)
Q Consensus 72 ~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~~ 151 (551)
-++|.|||+|||||+||-.|-+.|+-|+++|+ .+..||..- +| +|
T Consensus 1785 g~~vaiigsgpaglaaadqlnk~gh~v~vyer---------~dr~ggll~-yg-ip------------------------ 1829 (2142)
T KOG0399|consen 1785 GKRVAIIGSGPAGLAAADQLNKAGHTVTVYER---------SDRVGGLLM-YG-IP------------------------ 1829 (2142)
T ss_pred CcEEEEEccCchhhhHHHHHhhcCcEEEEEEe---------cCCcCceee-ec-CC------------------------
Confidence 47899999999999999999999999999993 667777642 11 22
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEeEEEEecCCEEEEcCEEEEeCeEEEcCCCC-CCCCCCCCCC
Q 008860 152 GTEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIEGRGKIVDPHTVDVDGKLYSARHILISVGGR-PFIPDIPGSE 230 (551)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~i~~~~v~v~g~~~~~d~lviAtG~~-p~~p~i~g~~ 230 (551)
....++. .+ +...+++.+.||+|+.++ .++.+ +..|+-.-.+|.+|+|+|+. |+-.++||-+
T Consensus 1830 ----nmkldk~------vv----~rrv~ll~~egi~f~tn~--eigk~-vs~d~l~~~~daiv~a~gst~prdlpv~grd 1892 (2142)
T KOG0399|consen 1830 ----NMKLDKF------VV----QRRVDLLEQEGIRFVTNT--EIGKH-VSLDELKKENDAIVLATGSTTPRDLPVPGRD 1892 (2142)
T ss_pred ----ccchhHH------HH----HHHHHHHHhhCceEEeec--ccccc-ccHHHHhhccCeEEEEeCCCCCcCCCCCCcc
Confidence 1111111 11 112245667799998863 22222 44456666899999999965 7777888854
Q ss_pred c--ee--------------cch-hhhcCCCCCCeEEEEcCcHHHHHHHHHHHhCCCe-EEEEeecCc---------cCCC
Q 008860 231 Y--AI--------------DSD-AALDLPSKPEKIAIVGGGYIALEFAGIFSGLTSE-VHVFIRQKK---------VLRG 283 (551)
Q Consensus 231 ~--~~--------------~~~-~~~~~~~~~~~vvViG~G~~g~e~a~~l~~~g~~-Vtlv~~~~~---------~l~~ 283 (551)
. +. ++. +.......+|+|+|||||..|.++-..-.++|++ |.-++--+. ++|.
T Consensus 1893 ~kgv~fame~l~~ntk~lld~~~d~~~~~~~gkkvivigggdtg~dcigtsvrhg~~sv~n~ellp~pp~~ra~~npwpq 1972 (2142)
T KOG0399|consen 1893 LKGVHFAMEFLEKNTKSLLDSVLDGNYISAKGKKVIVIGGGDTGTDCIGTSVRHGCKSVGNFELLPQPPPERAPDNPWPQ 1972 (2142)
T ss_pred ccccHHHHHHHHHhHHhhhccccccceeccCCCeEEEECCCCccccccccchhhccceecceeecCCCCcccCCCCCCcc
Confidence 1 11 000 1112334588999999999999988777777763 333332221 1221
Q ss_pred CCH----HHH-HHHHHHHHhcCcEEEc-----------------CcccEEE--EEcCCceEEEE-ECC-CeEEEeeEEEE
Q 008860 284 FDE----DIR-DFVAEQMSLRGIEFHT-----------------EESPQAI--LKSTDGSLSVK-TNK-GTVDGFSHVMF 337 (551)
Q Consensus 284 ~~~----~~~-~~l~~~l~~~Gv~i~~-----------------~~~v~~i--~~~~~~~~~V~-~~~-G~~i~~d~vi~ 337 (551)
++. ++. ...++.. |-..++ +-+..++ +.++.++..+. ..+ .+.++||.||+
T Consensus 1973 wprvfrvdygh~e~~~~~---g~dpr~y~vltk~f~~~~~g~v~gl~~vrvew~k~~~g~w~~~ei~~see~~eadlv~l 2049 (2142)
T KOG0399|consen 1973 WPRVFRVDYGHAEAKEHY---GSDPRTYSVLTKRFIGDDNGNVTGLETVRVEWEKDDKGRWQMKEINNSEEIIEADLVIL 2049 (2142)
T ss_pred CceEEEeecchHHHHHHh---CCCcceeeeeeeeeeccCCCceeeEEEEEEEEEecCCCceEEEEcCCcceeeecceeee
Confidence 111 111 1122211 111111 1111111 22333323222 222 24689999999
Q ss_pred ecCcCCCCCCCCccccCeeecCCCCeEeC-CCCCCCCCcEEEeCcCCCCCCChHHHHHhHHHHHHHH
Q 008860 338 ATGRRPNTKNLGLEKVGVKMTKNGAIEVD-EYSGTAVPSIWAVGDVTDRINLTPVALMEGGALAKTL 403 (551)
Q Consensus 338 a~G~~p~~~~l~l~~~gl~~~~~G~i~vd-~~~~t~~~~vya~GD~~~~~~~~~~A~~~g~~aa~~i 403 (551)
|.|+......+ .+..+++.|+++-|.+- +.+.|++++|||+|||-.+..+...|+++||-+|+.+
T Consensus 2050 amgf~gpe~~~-~~~~~~~~d~rsni~t~~~~y~t~v~~vfaagdcrrgqslvvwai~egrq~a~~v 2115 (2142)
T KOG0399|consen 2050 AMGFVGPEKSV-IEQLNLKTDPRSNILTPKDSYSTDVAKVFAAGDCRRGQSLVVWAIQEGRQAARQV 2115 (2142)
T ss_pred eccccCcchhh-hhhcCcccCccccccCCCccccccccceeecccccCCceEEEEEehhhhHHHHHH
Confidence 99996544332 67778888988877654 5678999999999999998888888999999998764
|
|
| >PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.9e-17 Score=166.48 Aligned_cols=251 Identities=17% Similarity=0.246 Sum_probs=128.0
Q ss_pred CccEEEECCChHHHHHHHHHHhCC-CcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhhccCCCcc
Q 008860 72 DFDLFTIGAGSGGVRASRFAANFG-ASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDESNGFGWK 150 (551)
Q Consensus 72 ~~dVvIIGgG~aGl~aA~~l~~~G-~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~ 150 (551)
.||+++||.||++|+.|..|.+.+ .++.++| +.+...+.-|+.....-+....+ +++- ..
T Consensus 2 ~~D~igIG~GP~nLslA~~l~~~~~~~~~f~e------~~~~f~Wh~gmll~~~~~q~~fl----------~Dlv---t~ 62 (341)
T PF13434_consen 2 IYDLIGIGFGPFNLSLAALLEEHGDLKALFLE------RRPSFSWHPGMLLPGARMQVSFL----------KDLV---TL 62 (341)
T ss_dssp EESEEEE--SHHHHHHHHHHHHHH---EEEEE------S-SS--TTGGG--SS-B-SS-TT----------SSSS---TT
T ss_pred ceeEEEEeeCHHHHHHHHHhhhcCCCCEEEEe------cCCCCCcCCccCCCCCccccccc----------cccC---cC
Confidence 489999999999999999999965 8999999 23334444444322111111111 1100 00
Q ss_pred cCCCCCCChHHHHHHHHHHHH------------HHHHHHHHHHHhCC--eEEEEeEEEEec----C----CEEEE-----
Q 008860 151 YGTEPQHDWSTLIANKNAELQ------------RLTGIYKNILINAG--ITLIEGRGKIVD----P----HTVDV----- 203 (551)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~--v~~~~~~~~~i~----~----~~v~v----- 203 (551)
......+.+-.+........+ .+.++.....++.. +.+ ..++..+. . ..|.+
T Consensus 63 ~~P~s~~sflnYL~~~~rl~~f~~~~~~~p~R~ef~dYl~Wva~~~~~~v~~-~~~V~~I~~~~~~~~~~~~V~~~~~~g 141 (341)
T PF13434_consen 63 RDPTSPFSFLNYLHEHGRLYEFYNRGYFFPSRREFNDYLRWVAEQLDNQVRY-GSEVTSIEPDDDGDEDLFRVTTRDSDG 141 (341)
T ss_dssp T-TTSTTSHHHHHHHTT-HHHHHHH--SS-BHHHHHHHHHHHHCCGTTTEEE-SEEEEEEEEEEETTEEEEEEEEEETTS
T ss_pred cCCCCcccHHHHHHHcCChhhhhhcCCCCCCHHHHHHHHHHHHHhCCCceEE-CCEEEEEEEecCCCccEEEEEEeecCC
Confidence 011122333333322221111 11111211222222 222 22333332 1 34555
Q ss_pred cCEEEEeCeEEEcCCCCCCCCCC----CCCCceecchhhhcC---CCCCCeEEEEcCcHHHHHHHHHHHhCCC--eEEEE
Q 008860 204 DGKLYSARHILISVGGRPFIPDI----PGSEYAIDSDAALDL---PSKPEKIAIVGGGYIALEFAGIFSGLTS--EVHVF 274 (551)
Q Consensus 204 ~g~~~~~d~lviAtG~~p~~p~i----~g~~~~~~~~~~~~~---~~~~~~vvViG~G~~g~e~a~~l~~~g~--~Vtlv 274 (551)
+++.+.++.||+|||..|.+|+. ++.+.++++.++... ....++|+|||+|.+|.|++..|.+.+. +|+++
T Consensus 142 ~~~~~~ar~vVla~G~~P~iP~~~~~~~~~~~v~Hss~~~~~~~~~~~~~~V~VVGgGQSAAEi~~~L~~~~~~~~V~~i 221 (341)
T PF13434_consen 142 DGETYRARNVVLATGGQPRIPEWFQDLPGSPRVFHSSEYLSRIDQSLAGKRVAVVGGGQSAAEIFLDLLRRGPEAKVTWI 221 (341)
T ss_dssp -EEEEEESEEEE----EE---GGGGGGTT-TTEEEGGGHHHHHT-----EEEEEE-SSHHHHHHHHHHHHH-TTEEEEEE
T ss_pred CeeEEEeCeEEECcCCCCCCCcchhhcCCCCCEEEehHhhhccccccCCCeEEEECCcHhHHHHHHHHHhCCCCcEEEEE
Confidence 35689999999999999998863 233556666665543 3457899999999999999999988764 89999
Q ss_pred eecCccCCC---------CCHHHHHH-------------------------------HHH------HHHhcCcEEEcCcc
Q 008860 275 IRQKKVLRG---------FDEDIRDF-------------------------------VAE------QMSLRGIEFHTEES 308 (551)
Q Consensus 275 ~~~~~~l~~---------~~~~~~~~-------------------------------l~~------~l~~~Gv~i~~~~~ 308 (551)
.|++.+.+. ++++..+. +.+ ...+..++++.+++
T Consensus 222 ~R~~~~~~~d~s~f~ne~f~P~~v~~f~~l~~~~R~~~l~~~~~~ny~~i~~~~l~~iy~~lY~~~v~g~~~~~l~~~~~ 301 (341)
T PF13434_consen 222 SRSPGFFPMDDSPFVNEIFSPEYVDYFYSLPDEERRELLREQRHTNYGGIDPDLLEAIYDRLYEQRVSGRGRLRLLPNTE 301 (341)
T ss_dssp ESSSS-EB----CCHHGGGSHHHHHHHHTS-HHHHHHHHHHTGGGTSSEB-HHHHHHHHHHHHHHHHHT---SEEETTEE
T ss_pred ECCCccCCCccccchhhhcCchhhhhhhcCCHHHHHHHHHHhHhhcCCCCCHHHHHHHHHHHHHHHhcCCCCeEEeCCCE
Confidence 998876432 23333222 111 11234578999999
Q ss_pred cEEEEEcCCceEEEEECC-----CeEEEeeEEEEecCcC
Q 008860 309 PQAILKSTDGSLSVKTNK-----GTVDGFSHVMFATGRR 342 (551)
Q Consensus 309 v~~i~~~~~~~~~V~~~~-----G~~i~~d~vi~a~G~~ 342 (551)
|+.++.++++.+.+.+.+ ..++++|.||+|||++
T Consensus 302 v~~~~~~~~~~~~l~~~~~~~~~~~~~~~D~VilATGy~ 340 (341)
T PF13434_consen 302 VTSAEQDGDGGVRLTLRHRQTGEEETLEVDAVILATGYR 340 (341)
T ss_dssp EEEEEEES-SSEEEEEEETTT--EEEEEESEEEE---EE
T ss_pred EEEEEECCCCEEEEEEEECCCCCeEEEecCEEEEcCCcc
Confidence 999998885337777654 2368999999999975
|
|
| >COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=99.70 E-value=2e-15 Score=147.55 Aligned_cols=325 Identities=16% Similarity=0.166 Sum_probs=188.8
Q ss_pred CCCCccEEEECCChHHHHHHHHHHhCC-CcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhh------hHh
Q 008860 69 SHYDFDLFTIGAGSGGVRASRFAANFG-ASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFS------HEF 141 (551)
Q Consensus 69 ~~~~~dVvIIGgG~aGl~aA~~l~~~G-~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~------~~~ 141 (551)
|+..+|++.||-||+.|+.|+.|.+.+ .+++.+| +.+...+..|+..-.--+...++-...... .++
T Consensus 2 ~~~~~DliGIG~GPfNL~LA~ll~e~~~~~~lFLe------rkp~F~WHpGmllegstlQv~FlkDLVTl~~PTs~ySFL 75 (436)
T COG3486 2 MAEVLDLIGIGIGPFNLSLAALLEEHSGLKSLFLE------RKPDFSWHPGMLLEGSTLQVPFLKDLVTLVDPTSPYSFL 75 (436)
T ss_pred CCcceeeEEEccCchHHHHHHHhccccCcceEEEe------cCCCCCcCCCcccCCccccccchhhhccccCCCCchHHH
Confidence 445699999999999999999999855 7899999 333455666665432222211111110000 000
Q ss_pred hhccCCCcccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHH--hCCeEEEEeEEEEecC--C-E--EEE-cCEEEEeCeE
Q 008860 142 DESNGFGWKYGTEPQHDWSTLIANKNAELQRLTGIYKNILI--NAGITLIEGRGKIVDP--H-T--VDV-DGKLYSARHI 213 (551)
Q Consensus 142 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~i~~--~-~--v~v-~g~~~~~d~l 213 (551)
..+.+.+-- ...+.++..... +.+...+..|....+. +.|-++..- ..++. . . +.. ++..+.++.|
T Consensus 76 NYL~~h~RL---y~Fl~~e~f~i~-R~Ey~dY~~Waa~~l~~~rfg~~V~~i--~~~~~d~~~~~~~~t~~~~~y~ar~l 149 (436)
T COG3486 76 NYLHEHGRL---YEFLNYETFHIP-RREYNDYCQWAASQLPSLRFGEEVTDI--SSLDGDAVVRLFVVTANGTVYRARNL 149 (436)
T ss_pred HHHHHcchH---hhhhhhhccccc-HHHHHHHHHHHHhhCCccccCCeeccc--cccCCcceeEEEEEcCCCcEEEeeeE
Confidence 000000000 000111111111 1222233333333332 112222110 11221 1 1 112 5668999999
Q ss_pred EEcCCCCCCCCC----CCCCCceecchhhhcCC-C--CCCeEEEEcCcHHHHHHHHHHHhC----CCeEEEEeecCccCC
Q 008860 214 LISVGGRPFIPD----IPGSEYAIDSDAALDLP-S--KPEKIAIVGGGYIALEFAGIFSGL----TSEVHVFIRQKKVLR 282 (551)
Q Consensus 214 viAtG~~p~~p~----i~g~~~~~~~~~~~~~~-~--~~~~vvViG~G~~g~e~a~~l~~~----g~~Vtlv~~~~~~l~ 282 (551)
||.+|.+|.+|+ +++ +.++++.++.+.. + ..++|.|||+|.+|.|+-..|... ..++.++.|+..++|
T Consensus 150 Vlg~G~~P~IP~~f~~l~~-~~vfHss~~~~~~~~~~~~~~V~ViG~GQSAAEi~~~Ll~~~~~~~~~l~witR~~gf~p 228 (436)
T COG3486 150 VLGVGTQPYIPPCFRSLIG-ERVFHSSEYLERHPELLQKRSVTVIGSGQSAAEIFLDLLNSQPPQDYQLNWITRSSGFLP 228 (436)
T ss_pred EEccCCCcCCChHHhCcCc-cceeehHHHHHhhHHhhcCceEEEEcCCccHHHHHHHHHhCCCCcCccceeeeccCCCCc
Confidence 999999999995 334 3466555555322 2 234599999999999999887654 346888999988765
Q ss_pred C---------CCHHHHHHH-----------------------------------HHHH--HhcCcEEEcCcccEEEEEcC
Q 008860 283 G---------FDEDIRDFV-----------------------------------AEQM--SLRGIEFHTEESPQAILKST 316 (551)
Q Consensus 283 ~---------~~~~~~~~l-----------------------------------~~~l--~~~Gv~i~~~~~v~~i~~~~ 316 (551)
. |.|++.+.+ .+.+ .+..+.++.+++|+.++..+
T Consensus 229 ~d~Skf~~e~F~P~y~dyfy~l~~~~r~~ll~~~~~~YkgI~~~ti~~Iy~~lY~~~l~~~~~~v~l~~~~ev~~~~~~G 308 (436)
T COG3486 229 MDYSKFGLEYFSPEYTDYFYGLPPEARDELLRKQRLLYKGISFDTIEEIYDLLYEQSLGGRKPDVRLLSLSEVQSVEPAG 308 (436)
T ss_pred cccchhhhhhcCchhHHHHhcCCHHHHHHHHhhcCccccccCHHHHHHHHHHHHHHHhcCCCCCeeeccccceeeeecCC
Confidence 4 233333221 1111 24578899999999999988
Q ss_pred CceEEEEEC-----CCeEEEeeEEEEecCcCCCCC-CCCccccCeeecCCCCeEeCCCCCCC-----CCcEEEeCcCCCC
Q 008860 317 DGSLSVKTN-----KGTVDGFSHVMFATGRRPNTK-NLGLEKVGVKMTKNGAIEVDEYSGTA-----VPSIWAVGDVTDR 385 (551)
Q Consensus 317 ~~~~~V~~~-----~G~~i~~d~vi~a~G~~p~~~-~l~l~~~gl~~~~~G~i~vd~~~~t~-----~~~vya~GD~~~~ 385 (551)
++.+.+.+. +.+++++|.||+|||++.... ++..-...+..+++|...|++..+.. .-.||+.|-+...
T Consensus 309 ~g~~~l~~~~~~~~~~~t~~~D~vIlATGY~~~~P~fL~~l~d~l~~d~~g~l~I~~dY~v~~~~~~~~~ifvqn~e~ht 388 (436)
T COG3486 309 DGRYRLTLRHHETGELETVETDAVILATGYRRAVPSFLEGLADRLQWDDDGRLVIGRDYRVLWDGPGKGRIFVQNAELHT 388 (436)
T ss_pred CceEEEEEeeccCCCceEEEeeEEEEecccccCCchhhhhHHHhhcccccCCeEecCceeeecCCCCcceEEEecccccc
Confidence 775666553 234789999999999985543 53222224667888999999876532 1369999987764
Q ss_pred -----CCChHHHHHhHHHHHHHHcCCC
Q 008860 386 -----INLTPVALMEGGALAKTLFQAE 407 (551)
Q Consensus 386 -----~~~~~~A~~~g~~aa~~i~g~~ 407 (551)
+.+.-.|.+.+.+ .+.++|..
T Consensus 389 HGig~pdLsl~a~Raa~I-~~~L~g~~ 414 (436)
T COG3486 389 HGIGAPDLSLGAWRAAVI-LNSLLGRE 414 (436)
T ss_pred cccCCccchHHHHHHHHH-HHHHhCcC
Confidence 4455567776655 45566644
|
|
| >KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.4e-15 Score=154.46 Aligned_cols=295 Identities=20% Similarity=0.207 Sum_probs=166.5
Q ss_pred CCccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCeeccCCCc-----c-hHHHHHhhhhhhHhhhc
Q 008860 71 YDFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCV-----P-KKLLVYASKFSHEFDES 144 (551)
Q Consensus 71 ~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~-----p-~~~l~~~~~~~~~~~~~ 144 (551)
...+|+|||||+|||.+|+.|.+.|++|+++|+ ...+||.|...--. + .+.+ ....+.....+
T Consensus 5 ~~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr---------~~~iGGlW~y~~~~~~~~ss~Y~~l--~tn~pKe~~~~ 73 (448)
T KOG1399|consen 5 MSKDVAVIGAGPAGLAAARELLREGHEVVVFER---------TDDIGGLWKYTENVEVVHSSVYKSL--RTNLPKEMMGY 73 (448)
T ss_pred CCCceEEECcchHHHHHHHHHHHCCCCceEEEe---------cCCccceEeecCcccccccchhhhh--hccCChhhhcC
Confidence 357999999999999999999999999999994 78899999865111 1 1111 11223344455
Q ss_pred cCCCcccCCCCC-CChHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEe--EEEEec--CCEEEE-cC----EEEEeCeEE
Q 008860 145 NGFGWKYGTEPQ-HDWSTLIANKNAELQRLTGIYKNILINAGITLIEG--RGKIVD--PHTVDV-DG----KLYSARHIL 214 (551)
Q Consensus 145 ~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~i~--~~~v~v-~g----~~~~~d~lv 214 (551)
+.|.+....... .+..++.++...+.+.+ --..-+++-.. ++..++ .+.+.. +. +..-||.|+
T Consensus 74 ~dfpf~~~~~~~~p~~~e~~~YL~~yA~~F-------~l~~~i~f~~~v~~v~~~~~gkW~V~~~~~~~~~~~~ifd~Vv 146 (448)
T KOG1399|consen 74 SDFPFPERDPRYFPSHREVLEYLRDYAKHF-------DLLKMINFNTEVVRVDSIDKGKWRVTTKDNGTQIEEEIFDAVV 146 (448)
T ss_pred CCCCCcccCcccCCCHHHHHHHHHHHHHhc-------ChhhheEecccEEEEeeccCCceeEEEecCCcceeEEEeeEEE
Confidence 555444321111 22223333333222221 11111222221 223333 455555 21 577899999
Q ss_pred EcCCCC--CCCCCCCCC--C----ceecchhhhcCCC-CCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCCCCC
Q 008860 215 ISVGGR--PFIPDIPGS--E----YAIDSDAALDLPS-KPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFD 285 (551)
Q Consensus 215 iAtG~~--p~~p~i~g~--~----~~~~~~~~~~~~~-~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~~~~ 285 (551)
+|||-. |++|.++|. + .++++.+....+. ..|+|+|||.|.+|+|++..+.....+|++..+ ........
T Consensus 147 VctGh~~~P~~P~~~g~~~~~f~G~~iHS~~Yk~~e~f~~k~VlVIG~g~SG~DIs~d~~~~ak~v~~~~~-~~~~~~~~ 225 (448)
T KOG1399|consen 147 VCTGHYVEPRIPQIPGPGIESFKGKIIHSHDYKSPEKFRDKVVLVVGCGNSGMDISLDLLRVAKEVHLSVV-SPKVHVEP 225 (448)
T ss_pred EcccCcCCCCCCcCCCCchhhcCCcceehhhccCcccccCceEEEECCCccHHHHHHHHHHhccCcceeee-cccccccc
Confidence 999965 888888883 2 2455555554332 468999999999999999999988888887765 10000000
Q ss_pred HHHHHHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCcCCCCCCCCccccCeeecCCCCeEe
Q 008860 286 EDIRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNTKNLGLEKVGVKMTKNGAIEV 365 (551)
Q Consensus 286 ~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~v 365 (551)
.. ....++..+. .|....+++ .+.+.++....+|.+|+|||+.=...++ +..+ .+.+
T Consensus 226 ~~--------~~~~~~~~~~--~i~~~~e~~----~~~~~~~~~~~~D~ii~ctgy~y~fPfl--~~~~-------~~~~ 282 (448)
T KOG1399|consen 226 PE--------ILGENLWQVP--SIKSFTEDG----SVFEKGGPVERVDRIIFCTGYKYKFPFL--ETLG-------LGTV 282 (448)
T ss_pred cc--------eeecceEEcc--ccccccCcc----eEEEcCceeEEeeeEEEeeeeEeeccee--ccCC-------ceee
Confidence 00 0011222221 144443221 1445566678899999999997666653 2211 1222
Q ss_pred CCCC-----CCCCCcEEEeCcCCCCC----CChHHHHHhHHHHHHHHcCCC
Q 008860 366 DEYS-----GTAVPSIWAVGDVTDRI----NLTPVALMEGGALAKTLFQAE 407 (551)
Q Consensus 366 d~~~-----~t~~~~vya~GD~~~~~----~~~~~A~~~g~~aa~~i~g~~ 407 (551)
++.. ..-.|..++-|...... ...+....|++.++..+.|..
T Consensus 283 ~~~~~~pl~k~~~p~~~~~~~~~~~l~~~~~~f~~~e~Q~r~~~~v~~G~~ 333 (448)
T KOG1399|consen 283 RDNIVGPLYKKVFPPALAPGLSLAGLPLIQIPFPMFELQARWVAAVLEGRL 333 (448)
T ss_pred ccCcccchheeccchhhCccccccccCeeeEeecceehhhhhhHhhhcCCC
Confidence 2222 11234444444222211 123456678888888888764
|
|
| >PTZ00188 adrenodoxin reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.1e-13 Score=142.20 Aligned_cols=254 Identities=15% Similarity=0.154 Sum_probs=144.1
Q ss_pred ccEEEECCChHHHHHHHHHH-hCCCcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhhccCCCccc
Q 008860 73 FDLFTIGAGSGGVRASRFAA-NFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDESNGFGWKY 151 (551)
Q Consensus 73 ~dVvIIGgG~aGl~aA~~l~-~~G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~~ 151 (551)
.+|+||||||||++||.+|. +.|++|+|+|+ ...+||.+. .|..|.
T Consensus 40 krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk---------~p~pgGLvR-~GVaPd----------------------- 86 (506)
T PTZ00188 40 FKVGIIGAGPSALYCCKHLLKHERVKVDIFEK---------LPNPYGLIR-YGVAPD----------------------- 86 (506)
T ss_pred CEEEEECCcHHHHHHHHHHHHhcCCeEEEEec---------CCCCccEEE-EeCCCC-----------------------
Confidence 57999999999999999865 57999999993 556677653 333331
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEeEEEEecCCEEEEcCEEEEeCeEEEcCCCCCCCCCCC----
Q 008860 152 GTEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIEGRGKIVDPHTVDVDGKLYSARHILISVGGRPFIPDIP---- 227 (551)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~i~~~~v~v~g~~~~~d~lviAtG~~p~~p~i~---- 227 (551)
.. ..+.+...+...+...+++++.+ +. ++ ..+.++.-.-.||.||+|+|+.+.-++++
T Consensus 87 -------h~--------~~k~v~~~f~~~~~~~~v~f~gn-v~-VG-~Dvt~eeL~~~YDAVIlAtGA~~l~ipi~~~~~ 148 (506)
T PTZ00188 87 -------HI--------HVKNTYKTFDPVFLSPNYRFFGN-VH-VG-VDLKMEELRNHYNCVIFCCGASEVSIPIGQQDE 148 (506)
T ss_pred -------Cc--------cHHHHHHHHHHHHhhCCeEEEee-eE-ec-CccCHHHHHhcCCEEEEEcCCCCCCCCcccccc
Confidence 00 11222223333344557777632 11 11 11222222348999999999886543311
Q ss_pred ------CC------Cceecchhhh-------------cCC------CCCCeEEEEcCcHHHHHHHHHH------------
Q 008860 228 ------GS------EYAIDSDAAL-------------DLP------SKPEKIAIVGGGYIALEFAGIF------------ 264 (551)
Q Consensus 228 ------g~------~~~~~~~~~~-------------~~~------~~~~~vvViG~G~~g~e~a~~l------------ 264 (551)
|. ..+++..++. ... ...++++|||.|++++++|..|
T Consensus 149 ~~~~~GGe~~~~~l~Gvf~A~dfV~WYNg~p~~~~~~~~~ayL~p~~~~~~vvVIG~GNVAlDvARiL~~~~d~L~~TDI 228 (506)
T PTZ00188 149 DKAVSGGETNPRKQNGIFHARDLIYFYNNMYNDVRCKAVDNYLNSFENFTTSIIIGNGNVSLDIARILIKSPDDLSKTDI 228 (506)
T ss_pred eeeeccccccccccCcEEehheEEEeecCCCCccccccccccccccCCCCcEEEECCCchHHHHHHHHccCHHHhhcCCC
Confidence 21 1122221111 110 1246899999999999999974
Q ss_pred --------HhCCC-eEEEEeecCcc--------------CCC----C-CHH-----------------------HHHHHH
Q 008860 265 --------SGLTS-EVHVFIRQKKV--------------LRG----F-DED-----------------------IRDFVA 293 (551)
Q Consensus 265 --------~~~g~-~Vtlv~~~~~~--------------l~~----~-~~~-----------------------~~~~l~ 293 (551)
++.+. +|+++.|+... ++. + +.+ ..+.+.
T Consensus 229 ~~~aL~~L~~s~v~~V~ivgRRGp~qaaFT~kElrEL~~l~~~~v~v~~~d~~~~~~~~~~~~~~r~~~r~~~~~~~~l~ 308 (506)
T PTZ00188 229 SSDYLKVIKRHNIKHIYIVGRRGFWQSSFTNAELRELISLENTKVILSKKNYDLCCHLKSDEENTNMKKRQHEIFQKMVK 308 (506)
T ss_pred cHHHHHHHHhCCCcEEEEEEecCHHHhCCCHHHHHHHhcCCCCeEEEChhhhcccccccchhhhhhhhhhhhhHHHHHHH
Confidence 23333 68888887542 111 0 000 111222
Q ss_pred HHHH----------hcCcEEEcCcccEEEEEcCCceEEEEEC-----------CCe--EEEeeEEEEecCcCCCCCCCCc
Q 008860 294 EQMS----------LRGIEFHTEESPQAILKSTDGSLSVKTN-----------KGT--VDGFSHVMFATGRRPNTKNLGL 350 (551)
Q Consensus 294 ~~l~----------~~Gv~i~~~~~v~~i~~~~~~~~~V~~~-----------~G~--~i~~d~vi~a~G~~p~~~~l~l 350 (551)
+..+ .+-+.+++.....+|..+++.+..|++. .|+ +++||+|+-|+|++...-
T Consensus 309 ~~~~~~~~~~~~~~~r~i~l~F~~sP~ei~~~~~~v~~v~~~~n~l~~~~~~~tg~~~~~~~~lV~rsiGY~g~p~---- 384 (506)
T PTZ00188 309 NYEEVEKNKEFYKTYKIIEFIFYFEIRQIRPIDGAMKNVELELNKNVPMSFSSFKENKVLVTPLVIFATGFKKSNF---- 384 (506)
T ss_pred HHHhhccCccCCCCceEEEEEccCCceEEECCCCcEeEEEEEEeecccCccCCCCeeEEEEcCEEEEcccccCCCC----
Confidence 2221 1345677777788887522332334332 233 689999999999987642
Q ss_pred cccCeeecCCCCeEeCCCCCC--CCCcEEEeCcCCCCC
Q 008860 351 EKVGVKMTKNGAIEVDEYSGT--AVPSIWAVGDVTDRI 386 (551)
Q Consensus 351 ~~~gl~~~~~G~i~vd~~~~t--~~~~vya~GD~~~~~ 386 (551)
. ++.+|.+ +.. ...+. ..|++|++|-+-.+|
T Consensus 385 ~--g~pFd~~--~~n-~~grv~~~~~g~Y~~GWiKrGP 417 (506)
T PTZ00188 385 A--ENLYNQS--VQM-FKEDIGQHKFAIFKAGWFDKGP 417 (506)
T ss_pred C--CCCcccc--CCC-CCCcccCCCCCcEEeeecCcCC
Confidence 1 3444422 221 11221 379999999998765
|
|
| >COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.57 E-value=8.6e-14 Score=137.99 Aligned_cols=192 Identities=17% Similarity=0.254 Sum_probs=124.7
Q ss_pred EEEeCeEEEcCCCCCCCCCCC---C---CCceecchhhhcC----------------CCCCCeEEEE---cCcH------
Q 008860 207 LYSARHILISVGGRPFIPDIP---G---SEYAIDSDAALDL----------------PSKPEKIAIV---GGGY------ 255 (551)
Q Consensus 207 ~~~~d~lviAtG~~p~~p~i~---g---~~~~~~~~~~~~~----------------~~~~~~vvVi---G~G~------ 255 (551)
++....+|+|||-.+.-+.-. | ...++|.-++.++ .+.|++|+.| |+-.
T Consensus 298 e~~vGaIIvAtGy~~~Da~~k~EyGYG~~~nVIT~lElErml~~~GPT~GkvlrpSdg~~pKrVaFIqCVGSRD~~~~n~ 377 (622)
T COG1148 298 ELEVGAIIVATGYKPFDATRKEEYGYGKYPNVITNLELERMLNPNGPTGGKVLRPSDGKPPKRVAFIQCVGSRDFQVGNP 377 (622)
T ss_pred EEEeceEEEEccccccCcchhhhcCCCCCcchhhHHHHHHHhccCCCCCceEEecCCCCCCceEEEEEEecCcCcccCCh
Confidence 578889999999766433210 1 1234443333221 1247888765 5433
Q ss_pred --------HHHHHHHHHHhC--CCeEEEEeecCccCCCCCHHHHHHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEEC
Q 008860 256 --------IALEFAGIFSGL--TSEVHVFIRQKKVLRGFDEDIRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTN 325 (551)
Q Consensus 256 --------~g~e~a~~l~~~--g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~ 325 (551)
.++-.|+..++. ..+|+++.-.-+ .+...+.+.+.+.-++.||+++.+ ++.+|....++.+.|+.+
T Consensus 378 YCSrvCCm~slKqA~~Ike~~Pd~~v~I~YmDiR---afG~~yEefY~~~Q~~~gV~fIRG-rvaei~e~p~~~l~V~~E 453 (622)
T COG1148 378 YCSRVCCMVSLKQAQLIKERYPDTDVTIYYMDIR---AFGKDYEEFYVRSQEDYGVRFIRG-RVAEIAEFPKKKLIVRVE 453 (622)
T ss_pred hhHHHHHHHHHhhhhhhhhcCCCcceeEEEEEee---ccCccHHHHHHhhhhhhchhhhcC-ChHHheeCCCCeeEEEEE
Confidence 122334444444 456777665433 234444555555555889999998 888888777664566554
Q ss_pred C---Ce--EEEeeEEEEecCcCCCCCCCC-ccccCeeecCCCCeEeC-CCC---CCCCCcEEEeCcCCCCCCChHHHHHh
Q 008860 326 K---GT--VDGFSHVMFATGRRPNTKNLG-LEKVGVKMTKNGAIEVD-EYS---GTAVPSIWAVGDVTDRINLTPVALME 395 (551)
Q Consensus 326 ~---G~--~i~~d~vi~a~G~~p~~~~l~-l~~~gl~~~~~G~i~vd-~~~---~t~~~~vya~GD~~~~~~~~~~A~~~ 395 (551)
| |+ ++++|+|++++|..|....-. ...+|+..+++|+++.. +.+ +|+.++||.+|-+.+ |+....++.|
T Consensus 454 dTl~g~~~e~~~DLVVLa~Gmep~~g~~kia~iLgL~~~~~gF~k~~hPkl~pv~s~~~GIflAG~aqg-PkdI~~siaq 532 (622)
T COG1148 454 DTLTGEVKEIEADLVVLATGMEPSEGAKKIAKILGLSQDEDGFLKEAHPKLRPVDSNRDGIFLAGAAQG-PKDIADSIAQ 532 (622)
T ss_pred eccCccceecccceEEEeeccccCcchHHHHHhcCcccCCCCccccCCCCcccccccCCcEEEeecccC-CccHHHHHHH
Confidence 3 33 689999999999998654211 45678999999999877 445 478999999996555 7777888888
Q ss_pred HHHHHHHH
Q 008860 396 GGALAKTL 403 (551)
Q Consensus 396 g~~aa~~i 403 (551)
|..||..+
T Consensus 533 a~aAA~kA 540 (622)
T COG1148 533 AKAAAAKA 540 (622)
T ss_pred hHHHHHHH
Confidence 88877654
|
|
| >KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.1e-12 Score=126.52 Aligned_cols=277 Identities=18% Similarity=0.254 Sum_probs=159.2
Q ss_pred ccEEEECCChHHHHHHHHHHh--CCCcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhhccCCCcc
Q 008860 73 FDLFTIGAGSGGVRASRFAAN--FGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDESNGFGWK 150 (551)
Q Consensus 73 ~dVvIIGgG~aGl~aA~~l~~--~G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~ 150 (551)
..|+|||+||||+++|..|.+ .+..|.|+|+ .....|. ..+|..|.
T Consensus 21 p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek---------~PvPFGL-vRyGVAPD---------------------- 68 (468)
T KOG1800|consen 21 PRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEK---------LPVPFGL-VRYGVAPD---------------------- 68 (468)
T ss_pred ceEEEECCCchHHHHHHHHHhcCCCCeeEeeec---------CCcccce-eeeccCCC----------------------
Confidence 479999999999999999998 4689999993 3344443 34444441
Q ss_pred cCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEeEEEEecCCEEEEcCEEEEeCeEEEcCCCC-CCCCCCCCC
Q 008860 151 YGTEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIEGRGKIVDPHTVDVDGKLYSARHILISVGGR-PFIPDIPGS 229 (551)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~i~~~~v~v~g~~~~~d~lviAtG~~-p~~p~i~g~ 229 (551)
.+ ++.+....+...++.....++-+.- + ...+.+..-+-.||.+|+|+|+. ++..+|||.
T Consensus 69 --------Hp--------EvKnvintFt~~aE~~rfsf~gNv~--v-G~dvsl~eL~~~ydavvLaYGa~~dR~L~IPGe 129 (468)
T KOG1800|consen 69 --------HP--------EVKNVINTFTKTAEHERFSFFGNVK--V-GRDVSLKELTDNYDAVVLAYGADGDRRLDIPGE 129 (468)
T ss_pred --------Cc--------chhhHHHHHHHHhhccceEEEecce--e-cccccHHHHhhcccEEEEEecCCCCcccCCCCc
Confidence 11 2222223333444444555554310 0 01122233355799999999965 678899996
Q ss_pred C--ceecchhhhcCCC------------CCCeEEEEcCcHHHHHHHHHHHhC----------------------CCeEEE
Q 008860 230 E--YAIDSDAALDLPS------------KPEKIAIVGGGYIALEFAGIFSGL----------------------TSEVHV 273 (551)
Q Consensus 230 ~--~~~~~~~~~~~~~------------~~~~vvViG~G~~g~e~a~~l~~~----------------------g~~Vtl 273 (551)
+ .+++.+.+..+.. -..+|+|||.|.+++++|..|... -.+|++
T Consensus 130 ~l~~V~Sarefv~Wyng~P~~~~le~dls~~~vvIvG~GNVAlDvARiLls~~~~l~~~TDi~~~aL~~L~~s~VkdV~l 209 (468)
T KOG1800|consen 130 ELSGVISAREFVGWYNGLPENQNLEPDLSGRKVVIVGNGNVALDVARILLSPQGPLFRRTDIPKLALNLLKRSNVKDVKL 209 (468)
T ss_pred ccccceehhhhhhhccCCCcccccCcccccceEEEEccCchhhhhhhhhhCCccccccccCCcHHHHhhhhcCCcceEEE
Confidence 4 4666555544321 256899999999999999877421 136888
Q ss_pred EeecCccCCCCC--------------------------------------HHHHHHHHHHHHhc---------CcE---E
Q 008860 274 FIRQKKVLRGFD--------------------------------------EDIRDFVAEQMSLR---------GIE---F 303 (551)
Q Consensus 274 v~~~~~~l~~~~--------------------------------------~~~~~~l~~~l~~~---------Gv~---i 303 (551)
+.|+..+-..|. +++.+.+.+.++++ +.+ +
T Consensus 210 vgRRgp~~~aFTiKELRE~~~l~~~~~r~~~~~~~~~~~~~~~~~~~RpRkrl~ell~k~~~e~~~~~~~~~~~~k~w~~ 289 (468)
T KOG1800|consen 210 VGRRGPLQVAFTIKELREVLELPGARPRLDPVDFSGKWMDESETPQHRPRKRLTELLLKWAREHRAKASEEAGGSKQWHL 289 (468)
T ss_pred EeccCccceeeeHHHHHHHhCCCCcccccCchhccceeCCcccccccCchhHHHHHHHHHHHhhhhccccccCccchhHH
Confidence 888764311110 11222233333321 111 1
Q ss_pred EcCcccEEEEEcCCce----EEE---------EECCCeEEEeeEEEEecCcCCCCCCCCccccCeeecCCCCeEeCCCCC
Q 008860 304 HTEESPQAILKSTDGS----LSV---------KTNKGTVDGFSHVMFATGRRPNTKNLGLEKVGVKMTKNGAIEVDEYSG 370 (551)
Q Consensus 304 ~~~~~v~~i~~~~~~~----~~V---------~~~~G~~i~~d~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~ 370 (551)
.+.-....|..+.+++ +.+ .+.+-++++|+.++.++|+....-. .++..|.+-++.-|.+.+
T Consensus 290 ~f~r~P~~i~~~~~~v~~~~~~~t~l~~~~~~~tg~~e~~p~~l~i~sIGYks~pv~-----~gipFd~~kgvv~n~~Gr 364 (468)
T KOG1800|consen 290 RFFRTPGAILPGADGVSGVRFQVTILEGTQAVPTGAFETLPCGLLIRSIGYKSVPVD-----SGIPFDDKKGVVPNVNGR 364 (468)
T ss_pred HHhcCHHHhccCcccccceEEEeeeehhhcccccCceEeeccceeEeeeeecccccC-----CCCCcccccCcccCCCce
Confidence 1111122233321110 111 1122247899999999999765421 144455444444444443
Q ss_pred C----CCCcEEEeCcCCCCC-CChHHHHHhHHHHHHHHcC
Q 008860 371 T----AVPSIWAVGDVTDRI-NLTPVALMEGGALAKTLFQ 405 (551)
Q Consensus 371 t----~~~~vya~GD~~~~~-~~~~~A~~~g~~aa~~i~g 405 (551)
. -.|++|++|-+..+| .....+++++..+++.|..
T Consensus 365 V~~s~~~pglY~sGW~k~GP~GvIattm~dAf~v~d~I~q 404 (468)
T KOG1800|consen 365 VLVSGCSPGLYASGWVKHGPTGVIATTMQDAFEVADTIVQ 404 (468)
T ss_pred EEeeccCCceEEEeeeccCCcceeeehhhhHHHHHHHHHH
Confidence 2 349999999999865 4455667778777777763
|
|
| >PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ] | Back alignment and domain information |
|---|
Probab=99.48 E-value=5e-13 Score=105.02 Aligned_cols=80 Identities=34% Similarity=0.655 Sum_probs=76.3
Q ss_pred eEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCCCCCHHHHHHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEECC
Q 008860 247 KIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTNK 326 (551)
Q Consensus 247 ~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~ 326 (551)
+++|||+|++|+|+|..|+++|.+|+++++.+.+++.+++++.+.+.+.|+++||++++++.+++++.++++ ++|+++|
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~-~~V~~~~ 79 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRLLPGFDPDAAKILEEYLRKRGVEVHTNTKVKEIEKDGDG-VEVTLED 79 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSSTTSSHHHHHHHHHHHHHTTEEEEESEEEEEEEEETTS-EEEEEET
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchhhhhcCHHHHHHHHHHHHHCCCEEEeCCEEEEEEEeCCE-EEEEEec
Confidence 689999999999999999999999999999999998899999999999999999999999999999999888 6698888
Q ss_pred C
Q 008860 327 G 327 (551)
Q Consensus 327 G 327 (551)
|
T Consensus 80 g 80 (80)
T PF00070_consen 80 G 80 (80)
T ss_dssp S
T ss_pred C
Confidence 6
|
Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A .... |
| >COG2081 Predicted flavoproteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.43 E-value=4.3e-12 Score=124.84 Aligned_cols=58 Identities=19% Similarity=0.351 Sum_probs=51.4
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCcCC
Q 008860 285 DEDIRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRP 343 (551)
Q Consensus 285 ~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p 343 (551)
..++.+.+.+.+++.||+++++++|.+++.++.+ ..+.+.+|+++.||.+|+|+|-..
T Consensus 110 A~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~~~-f~l~t~~g~~i~~d~lilAtGG~S 167 (408)
T COG2081 110 ASPIVDALLKELEALGVTIRTRSRVSSVEKDDSG-FRLDTSSGETVKCDSLILATGGKS 167 (408)
T ss_pred hHHHHHHHHHHHHHcCcEEEecceEEeEEecCce-EEEEcCCCCEEEccEEEEecCCcC
Confidence 4567889999999999999999999999988755 889999998899999999999443
|
|
| >TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit | Back alignment and domain information |
|---|
Probab=99.36 E-value=2.2e-10 Score=116.59 Aligned_cols=136 Identities=10% Similarity=0.095 Sum_probs=93.1
Q ss_pred hCCCeEEEEeecCccCCC-CCHHHHHHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEECCC--eEEEeeEEEEecCcC
Q 008860 266 GLTSEVHVFIRQKKVLRG-FDEDIRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTNKG--TVDGFSHVMFATGRR 342 (551)
Q Consensus 266 ~~g~~Vtlv~~~~~~l~~-~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~G--~~i~~d~vi~a~G~~ 342 (551)
..|+.|..+--. .|. ....+.+.+.+.+++.|++++.+++|.++..+++....|.+.++ ..+.+|.+|+|+|..
T Consensus 245 ~~g~~v~E~ptl---PPSv~G~RL~~aL~~~~~~~Gg~il~g~~V~~i~~~~~~v~~V~t~~g~~~~l~AD~vVLAaGaw 321 (419)
T TIGR03378 245 ATGLTLCELPTM---PPSLLGIRLEEALKHRFEQLGGVMLPGDRVLRAEFEGNRVTRIHTRNHRDIPLRADHFVLASGSF 321 (419)
T ss_pred HHCCCEEeCCCC---CCCCcHHHHHHHHHHHHHHCCCEEEECcEEEEEEeeCCeEEEEEecCCccceEECCEEEEccCCC
Confidence 447777655332 233 46778888999999999999999999999877766445666665 379999999999987
Q ss_pred -CCCCC--C-Cccc--cCeee---------------c----CCCCeEeCCCCCC-----CCCcEEEeCcCCCCCCC----
Q 008860 343 -PNTKN--L-GLEK--VGVKM---------------T----KNGAIEVDEYSGT-----AVPSIWAVGDVTDRINL---- 388 (551)
Q Consensus 343 -p~~~~--l-~l~~--~gl~~---------------~----~~G~i~vd~~~~t-----~~~~vya~GD~~~~~~~---- 388 (551)
+.--. + .+.+ .++++ + ..-+|.+|+++|. .++|+||+|-+.+++..
T Consensus 322 ~S~gL~a~l~~i~Epif~L~v~~~~~r~~W~~~~ff~~~p~~~~GV~~d~~lrp~~~g~~~~Nl~a~G~vL~G~d~~~~g 401 (419)
T TIGR03378 322 FSNGLVAEFDKIYEPIFGLDVLQLPDRDQWYQHRFFAPHPFMQFGVKTDAQLRPSRGGQTIENLYAIGAVLGGYDPIFEG 401 (419)
T ss_pred cCHHHHhhcCceeeeccCCCcCCCcchhhhcchhhcCCChhhhcCceEccccCccCCCcccccceEechhhcCCChHhcC
Confidence 32110 0 0000 01111 0 1125889999983 48999999999986421
Q ss_pred --hHHHHHhHHHHHHHHc
Q 008860 389 --TPVALMEGGALAKTLF 404 (551)
Q Consensus 389 --~~~A~~~g~~aa~~i~ 404 (551)
.-+|+..|-.||++|.
T Consensus 402 cG~GVai~Ta~~aa~~i~ 419 (419)
T TIGR03378 402 CGSGVAVSTALHAAEQII 419 (419)
T ss_pred CCchhHHHHHHHHHHhhC
Confidence 2368888888888763
|
Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase. |
| >PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=99.33 E-value=5.8e-12 Score=135.84 Aligned_cols=107 Identities=12% Similarity=0.118 Sum_probs=78.2
Q ss_pred CCCCCCeEEEEcCcHHHHHHHHH-------HHhCCCeEEEEeecCccCCCCCHHHHHHHHHHHHhcCcEEEcCcccEEEE
Q 008860 241 LPSKPEKIAIVGGGYIALEFAGI-------FSGLTSEVHVFIRQKKVLRGFDEDIRDFVAEQMSLRGIEFHTEESPQAIL 313 (551)
Q Consensus 241 ~~~~~~~vvViG~G~~g~e~a~~-------l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~ 313 (551)
+...|+.++++|++++++|++.. +.+++.+|++....+..+..+...+...+.+.+++.|+++++++.++++.
T Consensus 156 ~~~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~g~~~~~~L~~~~~~~gv~v~~~t~v~~l~ 235 (557)
T PRK07843 156 YGKVPLNMVVMQQDYVWLNLLKRHPRGVLRALKVGARTLWAKATGKNLLGMGQALAAGLRIGLQRAGVPVLLNTPLTDLY 235 (557)
T ss_pred cccccccccccHHHHHHHHhhhcCchhHHHHHHHHHHHHHHhccCCCcccCcHHHHHHHHHHHHcCCCEEEeCCEEEEEE
Confidence 44567889999999999998865 56667777766555444445677788889999999999999999999998
Q ss_pred EcCCceEEEEEC-CCe--EEEee-EEEEecCc-CCCCCC
Q 008860 314 KSTDGSLSVKTN-KGT--VDGFS-HVMFATGR-RPNTKN 347 (551)
Q Consensus 314 ~~~~~~~~V~~~-~G~--~i~~d-~vi~a~G~-~p~~~~ 347 (551)
.+++.++.|... +++ .+.++ .||+|+|- .+|.++
T Consensus 236 ~~~g~v~Gv~~~~~g~~~~i~A~~~VIlAtGG~~~n~~m 274 (557)
T PRK07843 236 VEDGRVTGVHAAESGEPQLIRARRGVILASGGFEHNEQM 274 (557)
T ss_pred EeCCEEEEEEEEeCCcEEEEEeceeEEEccCCcCcCHHH
Confidence 765554445443 443 47785 68887765 444443
|
|
| >PRK12842 putative succinate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.5e-11 Score=133.39 Aligned_cols=111 Identities=14% Similarity=0.148 Sum_probs=85.2
Q ss_pred chhhhcCCCCCCeEEEEcCcH--HHHHHHHHHHhCCCeEEEEeecCccCCCCC--------------HHHHHHHHHHHHh
Q 008860 235 SDAALDLPSKPEKIAIVGGGY--IALEFAGIFSGLTSEVHVFIRQKKVLRGFD--------------EDIRDFVAEQMSL 298 (551)
Q Consensus 235 ~~~~~~~~~~~~~vvViG~G~--~g~e~a~~l~~~g~~Vtlv~~~~~~l~~~~--------------~~~~~~l~~~l~~ 298 (551)
.+++.++...++++.++|+++ ++.+++..+...+.+++++.+...+++.++ ..+...+.+.+++
T Consensus 147 ~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~G~~l~~~L~~~~~~ 226 (574)
T PRK12842 147 GKDMARLRPPLKTITFIGMMFNSSNADLKHFFNATRSLTSFIYVAKRLATHLKDLALYRRGTQVTSGNALAARLAKSALD 226 (574)
T ss_pred hhhHHhhcCCcccccccceecccchHHHHHHHhhccchhHHHHHHHHHHhhHHHHhhccCCcccccHHHHHHHHHHHHHh
Confidence 456667777888999999998 899999999999988887766655554322 4566778888899
Q ss_pred cCcEEEcCcccEEEEEcCCceEEEEEC--CCe-EEEee-EEEEecCcCCCC
Q 008860 299 RGIEFHTEESPQAILKSTDGSLSVKTN--KGT-VDGFS-HVMFATGRRPNT 345 (551)
Q Consensus 299 ~Gv~i~~~~~v~~i~~~~~~~~~V~~~--~G~-~i~~d-~vi~a~G~~p~~ 345 (551)
.|+++++++.|+++..+++.++.|... +++ .+.++ .||+|+|..++.
T Consensus 227 ~Gv~i~~~~~v~~l~~~~g~V~GV~~~~~~~~~~i~a~k~VVlAtGg~~~n 277 (574)
T PRK12842 227 LGIPILTGTPARELLTEGGRVVGARVIDAGGERRITARRGVVLACGGFSHD 277 (574)
T ss_pred CCCEEEeCCEEEEEEeeCCEEEEEEEEcCCceEEEEeCCEEEEcCCCccch
Confidence 999999999999998766554455553 343 47786 799999988754
|
|
| >COG4529 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=99.30 E-value=5.7e-10 Score=112.81 Aligned_cols=197 Identities=16% Similarity=0.149 Sum_probs=106.3
Q ss_pred CccEEEECCChHHHHHHHHHHhC---CCcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHh--------hhhhh-
Q 008860 72 DFDLFTIGAGSGGVRASRFAANF---GASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYA--------SKFSH- 139 (551)
Q Consensus 72 ~~dVvIIGgG~aGl~aA~~l~~~---G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~--------~~~~~- 139 (551)
+++|+|||+|++|+.+|.+|.+. ...|.|+|+ ...+|+...+.---|+..+... ...++
T Consensus 1 ~~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~---------~~~~G~GiaYs~~~p~~~lNv~a~~mS~~~pD~p~~ 71 (474)
T COG4529 1 MFKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEP---------RPNFGQGIAYSTEEPEHLLNVPAARMSAFAPDIPQD 71 (474)
T ss_pred CceEEEECCchHHHHHHHHHHhCCCCCCceEEecc---------ccccCCCccCCCCCchhhhccccccccccCCCCchH
Confidence 37899999999999999999982 123999993 4445555444333332222111 11111
Q ss_pred HhhhccCCCcccCCCC-CCChHHHHHHHHHHHHHHHHHHHHHHHhCC---eEEEEeEEEEecCC---E---EEE-cCEEE
Q 008860 140 EFDESNGFGWKYGTEP-QHDWSTLIANKNAELQRLTGIYKNILINAG---ITLIEGRGKIVDPH---T---VDV-DGKLY 208 (551)
Q Consensus 140 ~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---v~~~~~~~~~i~~~---~---v~v-~g~~~ 208 (551)
+.+.+.+.+....... ...+...+....-+-+++...+..++++.. +.+++..+..+... . +.. ++...
T Consensus 72 F~~WL~~~~~~~~d~~~~~~d~~~y~pR~lfG~Yl~e~l~~l~~~~~~~~v~~~~~~a~~~~~~~n~~~~~~~~~~g~~~ 151 (474)
T COG4529 72 FVRWLQKQLQRYRDPEDINHDGQAYPPRRLFGEYLREQLAALLARGRQTRVRTIREEATSVRQDTNAGGYLVTTADGPSE 151 (474)
T ss_pred HHHHHHhcccccCChhhcCCccccccchhHHHHHHHHHHHHHHHhcCccceeEEeeeeecceeccCCceEEEecCCCCee
Confidence 1111111111100000 001111222222222333333444444433 77777655443221 1 222 77888
Q ss_pred EeCeEEEcCCCCCCCCCC-----CCCC----ceecchhhhcCCCCCCeEEEEcCcHHHHHHHHHHHhCCC--eEEEEeec
Q 008860 209 SARHILISVGGRPFIPDI-----PGSE----YAIDSDAALDLPSKPEKIAIVGGGYIALEFAGIFSGLTS--EVHVFIRQ 277 (551)
Q Consensus 209 ~~d~lviAtG~~p~~p~i-----~g~~----~~~~~~~~~~~~~~~~~vvViG~G~~g~e~a~~l~~~g~--~Vtlv~~~ 277 (551)
.+|-+|+|||..+-.++. +|.. ..+..+.+...+ ...+|+|+|+|..-++....|++.|. +||.+.|+
T Consensus 152 ~ad~~Vlatgh~~~~~~~~~~~~~~~~~~ia~~~~~~~ld~v~-~~drVli~GsgLt~~D~v~~l~~~gh~g~It~iSRr 230 (474)
T COG4529 152 IADIIVLATGHSAPPADPAARDLKGSPRLIADPYPANALDGVD-ADDRVLIVGSGLTSIDQVLVLRRRGHKGPITAISRR 230 (474)
T ss_pred eeeEEEEeccCCCCCcchhhhccCCCcceeccccCCccccccc-CCCceEEecCCchhHHHHHHHhccCCccceEEEecc
Confidence 999999999966544332 2221 122222222222 34569999999999999999999876 69999987
Q ss_pred C
Q 008860 278 K 278 (551)
Q Consensus 278 ~ 278 (551)
.
T Consensus 231 G 231 (474)
T COG4529 231 G 231 (474)
T ss_pred c
Confidence 6
|
|
| >PRK06134 putative FAD-binding dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=99.30 E-value=2.8e-11 Score=131.17 Aligned_cols=247 Identities=17% Similarity=0.223 Sum_probs=139.2
Q ss_pred CCCccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCeeccCC---CcchHHHHHhhhhhhHhhhccC
Q 008860 70 HYDFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRG---CVPKKLLVYASKFSHEFDESNG 146 (551)
Q Consensus 70 ~~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~~~~g---~~p~~~l~~~~~~~~~~~~~~~ 146 (551)
..++||+|||+|.+|+++|..+++.|++|+|||| ....||.+...+ |+|.+.+...............
T Consensus 10 ~~~~dvvvvG~G~aG~~aa~~~~~~g~~v~~iek---------~~~~gg~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~ 80 (581)
T PRK06134 10 DLECDVLVIGSGAAGLSAAVTAAWHGLKVIVVEK---------DPVFGGTTAWSGGWMWIPRNPLARRAGIVEDIEQPRT 80 (581)
T ss_pred CCccCEEEECcCHHHHHHHHHHHHCCCeEEEEec---------CCCCCccccccCceeecCccHHhhhccccchHHHHHH
Confidence 3469999999999999999999999999999993 345788877654 5676555443332222211111
Q ss_pred CCcccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHh-CCeEEEEeEEEEecCCEEEEcCEEEEeCeEEEcCCCCCCCC-
Q 008860 147 FGWKYGTEPQHDWSTLIANKNAELQRLTGIYKNILIN-AGITLIEGRGKIVDPHTVDVDGKLYSARHILISVGGRPFIP- 224 (551)
Q Consensus 147 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~i~~~~v~v~g~~~~~d~lviAtG~~p~~p- 224 (551)
+-.... ....+.+ +.. ...+... ...+++.+ .++++..... . ..+.....-.++|.+...|
T Consensus 81 ~~~~~~-~~~~~~~-l~~---~~~~~s~-~~~~wl~~~~gv~~~~~~~--~---------~d~~~~~~~~~~ggr~~~~~ 143 (581)
T PRK06134 81 YLRHEL-GARYDAA-RID---AFLEAGP-HMVAFFERHTALRFADGNA--I---------PDYHGDTPGAATGGRSLIAA 143 (581)
T ss_pred HHHHHh-CcCCCHH-HHH---HHHhccH-HHHHHHHhcCCceeeecCC--C---------CCCCCCCCCCCCCCCeeccC
Confidence 000000 0011111 111 1111111 11234443 3566532100 0 0011111223455555444
Q ss_pred CCCCCCceecchhhhcCCCCCCeEEEEcCcHHH-HHHHHHHHhCCCeEEEEeecCccCCC--------------CCHHHH
Q 008860 225 DIPGSEYAIDSDAALDLPSKPEKIAIVGGGYIA-LEFAGIFSGLTSEVHVFIRQKKVLRG--------------FDEDIR 289 (551)
Q Consensus 225 ~i~g~~~~~~~~~~~~~~~~~~~vvViG~G~~g-~e~a~~l~~~g~~Vtlv~~~~~~l~~--------------~~~~~~ 289 (551)
+++|.+.. ++...+.+.+.++.++|++.++ .+++..+...+..+.+..+...+++. ....+.
T Consensus 144 ~~~g~~~~---~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~ 220 (581)
T PRK06134 144 PFDGRELG---ALLERLRKPLRETSFMGMPIMAGADLAAFLNPTRSFRAFLHVARRFARHLIDLARHGRGMHLVNGNALV 220 (581)
T ss_pred CCChhhhh---HHHHHhccccccccccccccccHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHhhccCCCcccCHHHHH
Confidence 34443221 3444555566777888888765 67777766665554443332222111 234566
Q ss_pred HHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEE--CCCe-EEEe-eEEEEecCcCCCC
Q 008860 290 DFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKT--NKGT-VDGF-SHVMFATGRRPNT 345 (551)
Q Consensus 290 ~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~--~~G~-~i~~-d~vi~a~G~~p~~ 345 (551)
..+.+.+++.|+++++++.|+++..+++.++.|.. .++. .+.+ +.||+|+|...+.
T Consensus 221 ~~L~~~a~~~Gv~i~~~t~v~~l~~~~g~v~GV~~~~~~~~~~i~a~k~VVlAtGg~~~n 280 (581)
T PRK06134 221 ARLLKSAEDLGVRIWESAPARELLREDGRVAGAVVETPGGLQEIRARKGVVLAAGGFPHD 280 (581)
T ss_pred HHHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEEEEECCcEEEEEeCCEEEEcCCCcccC
Confidence 78888999999999999999998876554444544 3443 4788 9999999987754
|
|
| >PRK08401 L-aspartate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=4.5e-11 Score=126.38 Aligned_cols=149 Identities=19% Similarity=0.219 Sum_probs=77.7
Q ss_pred CccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCeeccC--C-----------------CcchHHHH
Q 008860 72 DFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLR--G-----------------CVPKKLLV 132 (551)
Q Consensus 72 ~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~~~~--g-----------------~~p~~~l~ 132 (551)
++||||||||.||++||+.|++.|.+|+||||.... .......||..... . |.|.....
T Consensus 1 ~~DVvVVGaG~AGl~AAi~aae~G~~V~liek~~~~--~~s~~a~ggi~~~~~~~ds~e~~~~d~~~~~~~~~d~~~v~~ 78 (466)
T PRK08401 1 MMKVGIVGGGLAGLTAAISLAKKGFDVTIIGPGIKK--SNSYLAQAGIAFPILEGDSIRAHVLDTIRAGKYINDEEVVWN 78 (466)
T ss_pred CCeEEEECccHHHHHHHHHHHHCCCeEEEEeCCCCC--CCcHHHcCCcccccCCCCcHHHHHHHHHHHhcCCCCHHHHHH
Confidence 379999999999999999999999999999953110 00011122321100 0 11111111
Q ss_pred HhhhhhhHhhhccCCCcccCCCC---CCChHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEeEEEEe--cCCEE---EEc
Q 008860 133 YASKFSHEFDESNGFGWKYGTEP---QHDWSTLIANKNAELQRLTGIYKNILINAGITLIEGRGKIV--DPHTV---DVD 204 (551)
Q Consensus 133 ~~~~~~~~~~~~~~~g~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~i--~~~~v---~v~ 204 (551)
...+....+..+..+|+.+.... ...+..........-..+...+.+.+.+.+++++.+.+..+ +...+ .++
T Consensus 79 ~~~~~~~~i~~L~~~Gv~f~~~~~~~g~~~~r~~~~~~~~G~~i~~~L~~~~~~~gv~i~~~~v~~l~~~~g~v~Gv~~~ 158 (466)
T PRK08401 79 VISKSSEAYDFLTSLGLEFEGNELEGGHSFPRVFTIKNETGKHIIKILYKHARELGVNFIRGFAEELAIKNGKAYGVFLD 158 (466)
T ss_pred HHHHHHHHHHHHHHcCCCcccCCCcCCccCCeEEECCCCchHHHHHHHHHHHHhcCCEEEEeEeEEEEeeCCEEEEEEEC
Confidence 12222333344455565543210 11111100000001122333344455667899887765544 22332 236
Q ss_pred CEEEEeCeEEEcCCCCCC
Q 008860 205 GKLYSARHILISVGGRPF 222 (551)
Q Consensus 205 g~~~~~d~lviAtG~~p~ 222 (551)
+..+.++.||+|||+...
T Consensus 159 g~~i~a~~VVLATGG~~~ 176 (466)
T PRK08401 159 GELLKFDATVIATGGFSG 176 (466)
T ss_pred CEEEEeCeEEECCCcCcC
Confidence 778999999999997553
|
|
| >PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.6e-10 Score=118.70 Aligned_cols=60 Identities=28% Similarity=0.410 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCcCCCC
Q 008860 286 EDIRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNT 345 (551)
Q Consensus 286 ~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~~ 345 (551)
.++.+.+.+.+++.||+++++++|.+|+.++++...|.+++++.+.+|.||+|+|-.+..
T Consensus 109 ~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~~~~~f~v~~~~~~~~~a~~vILAtGG~S~p 168 (409)
T PF03486_consen 109 SSVVDALLEELKRLGVEIHFNTRVKSIEKKEDGVFGVKTKNGGEYEADAVILATGGKSYP 168 (409)
T ss_dssp HHHHHHHHHHHHHHT-EEE-S--EEEEEEETTEEEEEEETTTEEEEESEEEE----SSSG
T ss_pred HHHHHHHHHHHHHcCCEEEeCCEeeeeeecCCceeEeeccCcccccCCEEEEecCCCCcc
Confidence 456788889999999999999999999987777688888777889999999999986543
|
; PDB: 2I0Z_A 3V76_A 2GQF_A. |
| >COG0029 NadB Aspartate oxidase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.16 E-value=4.2e-10 Score=113.46 Aligned_cols=314 Identities=16% Similarity=0.179 Sum_probs=158.6
Q ss_pred cEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCeeccCC-------------------CcchHHHHHh
Q 008860 74 DLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRG-------------------CVPKKLLVYA 134 (551)
Q Consensus 74 dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~~~~g-------------------~~p~~~l~~~ 134 (551)
||+|||+|.|||++|+.|.+. ++|+|+.|..... ..+....||.-.-.+ |.+...-...
T Consensus 9 dV~IiGsG~AGL~~AL~L~~~-~~V~vltk~~~~~-~sS~~AQGGIAa~~~~~Ds~~~Hv~DTL~AG~glcD~~aV~~iv 86 (518)
T COG0029 9 DVLIIGSGLAGLTAALSLAPS-FRVTVLTKGPLGE-SSSYWAQGGIAAALSEDDSPELHVADTLAAGAGLCDEEAVEFIV 86 (518)
T ss_pred cEEEECCcHHHHHHHHhCCCC-CcEEEEeCCCCCC-ccchhhcCceEeeeCCCCCHHHHHHHHHHhcCCCCcHHHHHHHH
Confidence 899999999999999999987 9999999533222 233445666653211 4444444455
Q ss_pred hhhhhHhhhccCCCcccCCCCCC--C--------hHHHHHHHHHHHHHHHHHHHHHH-HhCCeEEEEeE-EEE--ecCC-
Q 008860 135 SKFSHEFDESNGFGWKYGTEPQH--D--------WSTLIANKNAELQRLTGIYKNIL-INAGITLIEGR-GKI--VDPH- 199 (551)
Q Consensus 135 ~~~~~~~~~~~~~g~~~~~~~~~--~--------~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~-~~~--i~~~- 199 (551)
.+-...++.+..+|++++....- . ...+..-....-+.+...+.... +..+|+++.+. +.. +++.
T Consensus 87 ~~~~~ai~~Li~~Gv~FDr~~~g~~~lt~EggHS~rRIlH~~~~TG~~I~~~L~~~v~~~p~I~v~e~~~a~~li~~~~~ 166 (518)
T COG0029 87 SEAPEAIEWLIDLGVPFDRDEDGRLHLTREGGHSRRRILHAADATGKEIMTALLKKVRNRPNITVLEGAEALDLIIEDGI 166 (518)
T ss_pred HhHHHHHHHHHHcCCCCcCCCCCceeeeeecccCCceEEEecCCccHHHHHHHHHHHhcCCCcEEEecchhhhhhhcCCc
Confidence 56677778888888888764421 1 01110000001112222222222 33689998873 222 2333
Q ss_pred E---EEE--c-C--EEEEeCeEEEcCCCCCCCCC-------CCC--CCce------ecchhhhcCCCCCCeEEEEcCcHH
Q 008860 200 T---VDV--D-G--KLYSARHILISVGGRPFIPD-------IPG--SEYA------IDSDAALDLPSKPEKIAIVGGGYI 256 (551)
Q Consensus 200 ~---v~v--~-g--~~~~~d~lviAtG~~p~~p~-------i~g--~~~~------~~~~~~~~~~~~~~~vvViG~G~~ 256 (551)
. +.+ . + ..+.++.+|+|||.--.+.. ..| +... ..--++.++ .-...-.+ +-.
T Consensus 167 ~~~Gv~~~~~~~~~~~~~a~~vVLATGG~g~ly~~TTNp~~~~GdGIamA~rAGa~v~DlEFvQF---HPT~l~~~-~~~ 242 (518)
T COG0029 167 GVAGVLVLNRNGELGTFRAKAVVLATGGLGGLYAYTTNPKGSTGDGIAMAWRAGAAVADLEFVQF---HPTALYIP-QRR 242 (518)
T ss_pred eEeEEEEecCCCeEEEEecCeEEEecCCCcccccccCCCccccccHHHHHHHcCCeecCccceee---ccceecCC-CCc
Confidence 2 222 2 2 46788999999995432211 111 1000 000111111 11111111 111
Q ss_pred HHHHHHHHHhCCCeEEEEeecCccCCCC-------CHH-HHHHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEECCCe
Q 008860 257 ALEFAGIFSGLTSEVHVFIRQKKVLRGF-------DED-IRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTNKGT 328 (551)
Q Consensus 257 g~e~a~~l~~~g~~Vtlv~~~~~~l~~~-------~~~-~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~G~ 328 (551)
..-+.+.++-.|.. -+-....++++.+ +.+ ++..+...+++.|-.+++. +..+..+ . +. +
T Consensus 243 ~~LiSEAVRGEGA~-L~~~~GeRFm~~~~p~~ELAPRDVVARAI~~e~~~~g~~V~LD--~s~~~~~--~-~~------~ 310 (518)
T COG0029 243 AFLISEAVRGEGAI-LVNEDGERFMPDYHPRGELAPRDVVARAIDAEMKRGGADVFLD--ISHIPGD--F-FE------R 310 (518)
T ss_pred cceeehhhhcCccE-EECCCCCccccCCCCccccchHHHHHHHHHHHHHhcCCeEEEe--ccCCCch--h-hh------h
Confidence 11122333333432 1223445555432 223 3456677777777666655 2222110 0 00 0
Q ss_pred EEEe-eEEEEecCcCCCCCCCCccccCeeecCCCCeEeCCCCCCCCCcEEEeCcCCCC-----CCChHH----HHHhHHH
Q 008860 329 VDGF-SHVMFATGRRPNTKNLGLEKVGVKMTKNGAIEVDEYSGTAVPSIWAVGDVTDR-----INLTPV----ALMEGGA 398 (551)
Q Consensus 329 ~i~~-d~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~t~~~~vya~GD~~~~-----~~~~~~----A~~~g~~ 398 (551)
.++. .......|..|..+.++.... .---.|+|.||.+.||++|++||+|.|+.. ..++++ +.--|..
T Consensus 311 rFP~I~~~c~~~GiD~~r~~IPV~Pa--aHY~mGGI~vD~~GrTsi~gLYAiGEvA~TGlHGANRLASNSLLE~vV~g~~ 388 (518)
T COG0029 311 RFPTIYAACLKAGIDPTREPIPVVPA--AHYTMGGIAVDANGRTSIPGLYAIGEVACTGLHGANRLASNSLLECLVFGKR 388 (518)
T ss_pred hCcHHHHHHHHcCCCcccCccCccch--hheecccEEECCCCcccCcccEEeeeecccccccchhhhhhhHHHHHHHHHH
Confidence 1110 112223355554443221111 111348999999999999999999999974 345554 4555666
Q ss_pred HHHHHcCCC
Q 008860 399 LAKTLFQAE 407 (551)
Q Consensus 399 aa~~i~g~~ 407 (551)
+|++|.+..
T Consensus 389 aA~~i~~~~ 397 (518)
T COG0029 389 AAEDIAGRL 397 (518)
T ss_pred HHHHhhccc
Confidence 777777653
|
|
| >TIGR00551 nadB L-aspartate oxidase | Back alignment and domain information |
|---|
Probab=99.12 E-value=7e-10 Score=118.12 Aligned_cols=47 Identities=30% Similarity=0.444 Sum_probs=37.2
Q ss_pred CCCCeEeCCCCCCCCCcEEEeCcCCC-CC--------CChHHHHHhHHHHHHHHcC
Q 008860 359 KNGAIEVDEYSGTAVPSIWAVGDVTD-RI--------NLTPVALMEGGALAKTLFQ 405 (551)
Q Consensus 359 ~~G~i~vd~~~~t~~~~vya~GD~~~-~~--------~~~~~A~~~g~~aa~~i~g 405 (551)
..|+|.||.+.||++||+||+|+|+. .. .....|.-.|++|++++..
T Consensus 332 t~GGi~vd~~~~t~I~GLyAaGE~a~~g~hGanrl~g~sl~~~~v~G~~Ag~~aa~ 387 (488)
T TIGR00551 332 TCGGISVDDHGRTTVPGLYAIGEVACTGLHGANRLASNSLLECLVFGWSAAEDISR 387 (488)
T ss_pred ecCCEEECCCCcccCCCEEECccccccccCcccccchhHHHHHHHHHHHHHHHHHh
Confidence 35889999999999999999999973 21 1224577889999999874
|
L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA. |
| >PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=7.7e-10 Score=125.81 Aligned_cols=46 Identities=26% Similarity=0.278 Sum_probs=37.9
Q ss_pred CCCeEeCCCCCCCCCcEEEeCcCCCC-CCChHHHHHhHHHHHHHHcC
Q 008860 360 NGAIEVDEYSGTAVPSIWAVGDVTDR-INLTPVALMEGGALAKTLFQ 405 (551)
Q Consensus 360 ~G~i~vd~~~~t~~~~vya~GD~~~~-~~~~~~A~~~g~~aa~~i~g 405 (551)
.|+|.||.+++|++||+||+|||+.. ......|.-.|++|+.++..
T Consensus 361 ~GGi~vd~~~~T~v~GLfAaGE~a~~~~nsl~~a~v~G~~Ag~~a~~ 407 (897)
T PRK13800 361 ASGVWVDEHARTTVPGLYAAGDLACVPHNYMIGAFVFGDLAGAHAAG 407 (897)
T ss_pred cceEEecCCCcccCCCeEechhccCcchhhhhhHHHhHHHHHHHHHH
Confidence 47999999999999999999999875 33444678889998888753
|
|
| >PRK04176 ribulose-1,5-biphosphate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=4.5e-09 Score=101.78 Aligned_cols=117 Identities=15% Similarity=0.195 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHhcCcEEEcCcccEEEEEcCC-ceEEEEEC-----------CCeEEEeeEEEEecCcCCCCC-CCCcc--
Q 008860 287 DIRDFVAEQMSLRGIEFHTEESPQAILKSTD-GSLSVKTN-----------KGTVDGFSHVMFATGRRPNTK-NLGLE-- 351 (551)
Q Consensus 287 ~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~-~~~~V~~~-----------~G~~i~~d~vi~a~G~~p~~~-~l~l~-- 351 (551)
++...+.+..++.|++++.++.|.++..+++ .+..+... +..++.++.||.|+|...... .+ .+
T Consensus 105 ~l~~~L~~~A~~~Gv~I~~~t~V~dl~~~~~g~V~Gvv~~~~~v~~~g~~~~~~~i~Ak~VI~ATG~~a~v~~~l-~~~~ 183 (257)
T PRK04176 105 EAAAKLAAAAIDAGAKIFNGVSVEDVILREDPRVAGVVINWTPVEMAGLHVDPLTIEAKAVVDATGHDAEVVSVL-ARKG 183 (257)
T ss_pred HHHHHHHHHHHHcCCEEEcCceeceeeEeCCCcEEEEEEccccccccCCCCCcEEEEcCEEEEEeCCCcHHHHHH-HHHc
Confidence 4566677777889999999999999876555 33334332 224689999999999755432 10 00
Q ss_pred -ccCeeecCCCCeE--------eCCCCCCCCCcEEEeCcCCCC----C---CChHHHHHhHHHHHHHHcC
Q 008860 352 -KVGVKMTKNGAIE--------VDEYSGTAVPSIWAVGDVTDR----I---NLTPVALMEGGALAKTLFQ 405 (551)
Q Consensus 352 -~~gl~~~~~G~i~--------vd~~~~t~~~~vya~GD~~~~----~---~~~~~A~~~g~~aa~~i~g 405 (551)
..+..+...+..+ |+.+-+ -+|++|++|=++.. | +.--.=..+|+.+|+.++.
T Consensus 184 ~~~~~~~~g~~~~~~~~~e~~v~~~t~~-~~~g~~~~gm~~~~~~~~~rmg~~fg~m~~sg~~~a~~~~~ 252 (257)
T PRK04176 184 PELGIEVPGEKSMWAERGEKLVVENTGE-VYPGLYVAGMAANAVHGLPRMGPIFGGMLLSGKKVAELILE 252 (257)
T ss_pred CCcccccCCccccccCchHHHHHhcCCe-EcCCEEEeehhhhhhcCCCccCchhHhHHHhHHHHHHHHHH
Confidence 0111111111222 222222 47999999988763 2 1111224678888887764
|
|
| >TIGR00292 thiazole biosynthesis enzyme | Back alignment and domain information |
|---|
Probab=99.06 E-value=3.1e-09 Score=102.51 Aligned_cols=118 Identities=15% Similarity=0.186 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHhcCcEEEcCcccEEEEEcCC--ceEEEEEC-----------CCeEEEeeEEEEecCcCCCC-CCCCccc
Q 008860 287 DIRDFVAEQMSLRGIEFHTEESPQAILKSTD--GSLSVKTN-----------KGTVDGFSHVMFATGRRPNT-KNLGLEK 352 (551)
Q Consensus 287 ~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~--~~~~V~~~-----------~G~~i~~d~vi~a~G~~p~~-~~l~l~~ 352 (551)
++.+.+.+...+.|++++.++.+.++..+++ .+..|.+. +...+.++.||.|||..... .++ .+.
T Consensus 101 el~~~L~~~a~e~GV~I~~~t~V~dli~~~~~~~V~GVv~~~~~v~~~g~~~d~~~i~Ak~VVdATG~~a~v~~~l-~~~ 179 (254)
T TIGR00292 101 EFISTLASKALQAGAKIFNGTSVEDLITRDDTVGVAGVVINWSAIELAGLHVDPLTQRSRVVVDATGHDAEIVAVC-AKK 179 (254)
T ss_pred HHHHHHHHHHHHcCCEEECCcEEEEEEEeCCCCceEEEEeCCccccccCCCCCCEEEEcCEEEEeecCCchHHHHH-HHH
Confidence 4556667777888999999999999887655 33455543 22478999999999976532 111 111
Q ss_pred cCeeecC-----CCCeEeCC-------CCCCCCCcEEEeCcCCCC----CC--ChHHH-HHhHHHHHHHHcC
Q 008860 353 VGVKMTK-----NGAIEVDE-------YSGTAVPSIWAVGDVTDR----IN--LTPVA-LMEGGALAKTLFQ 405 (551)
Q Consensus 353 ~gl~~~~-----~G~i~vd~-------~~~t~~~~vya~GD~~~~----~~--~~~~A-~~~g~~aa~~i~g 405 (551)
.++.... .+..+.+. +-+--+|++|++|=.+.. |. -...+ ..+|+.+|+.++.
T Consensus 180 ~~~~~~~~~~~g~~~~~~~~~e~~~~~~t~~~~~g~~~~gm~~~~~~~~~rmgp~fg~m~~sg~~~a~~~~~ 251 (254)
T TIGR00292 180 IVLEDQVPKLGGEKSMWAEVAEVAIHENTREVVPNLYVAGMAVAAVHGLPRMGPIFGGMLLSGKHVAEQILE 251 (254)
T ss_pred cCcccCCcccCCchhhhhhhhHHHHHhccCcccCCEEEechhhhhhcCCCCcCchHHHHHHhhHHHHHHHHH
Confidence 1111111 11222221 112247999999988763 21 11223 3678888887763
|
This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis. |
| >PRK08275 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=2.5e-09 Score=115.65 Aligned_cols=44 Identities=25% Similarity=0.284 Sum_probs=36.2
Q ss_pred CCeEeCCCCCCCCCcEEEeCcCCCC-CCChHHHHHhHHHHHHHHc
Q 008860 361 GAIEVDEYSGTAVPSIWAVGDVTDR-INLTPVALMEGGALAKTLF 404 (551)
Q Consensus 361 G~i~vd~~~~t~~~~vya~GD~~~~-~~~~~~A~~~g~~aa~~i~ 404 (551)
|+|.||++++|++|++||+|||+.. ......|...|++++.++.
T Consensus 357 Ggi~~d~~~~t~i~gl~a~Ge~~~~~~~~~~~~~~~G~~a~~~~~ 401 (554)
T PRK08275 357 SGVWVNEKAETTVPGLYAAGDMASVPHNYMLGAFTYGWFAGENAA 401 (554)
T ss_pred CcEEECCCCccCCCCEEECcccCCchhHHHHHHHHHHHHHHHHHH
Confidence 6899999999999999999999753 2334467888999888875
|
|
| >COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.06 E-value=4e-09 Score=100.53 Aligned_cols=119 Identities=11% Similarity=0.110 Sum_probs=80.1
Q ss_pred HHHHHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEECCCeE--EEeeEEEEecCcCCCCCCC-----------Ccccc
Q 008860 287 DIRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTNKGTV--DGFSHVMFATGRRPNTKNL-----------GLEKV 353 (551)
Q Consensus 287 ~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~G~~--i~~d~vi~a~G~~p~~~~l-----------~l~~~ 353 (551)
.+.+.+.+.+++.|..+..+.+|.+.+-.++++..|.+.+... +.+|..|+|+|.--...+. .++-.
T Consensus 259 Rl~~~L~~~f~~~Gg~~m~Gd~V~~a~~~~~~v~~i~trn~~diP~~a~~~VLAsGsffskGLvae~d~I~EPIf~ldi~ 338 (421)
T COG3075 259 RLHNQLQRQFEQLGGLWMPGDEVKKATCKGGRVTEIYTRNHADIPLRADFYVLASGSFFSKGLVAERDKIYEPIFDLDIL 338 (421)
T ss_pred hHHHHHHHHHHHcCceEecCCceeeeeeeCCeEEEEEecccccCCCChhHeeeeccccccccchhhhhhhhcchhhcccc
Confidence 3456678888999999999999999988877766677777664 5699999999863222110 00000
Q ss_pred Cee----e------cC----CCCeEeCCCCCC-----CCCcEEEeCcCCCCCCC------hHHHHHhHHHHHHHHcC
Q 008860 354 GVK----M------TK----NGAIEVDEYSGT-----AVPSIWAVGDVTDRINL------TPVALMEGGALAKTLFQ 405 (551)
Q Consensus 354 gl~----~------~~----~G~i~vd~~~~t-----~~~~vya~GD~~~~~~~------~~~A~~~g~~aa~~i~g 405 (551)
..+ . .+ .=++.+|+++|. .++|+||||.+.+++.. .-+|+..|..|++.|+.
T Consensus 339 ~~~dR~~W~~~~ffapqp~~qfGV~tD~~lrp~~~g~~~eNL~aiGavlgGfdpi~egcGsGVaivta~~aa~qi~~ 415 (421)
T COG3075 339 QTADRAEWYHSDFFAPQPYQQFGVTTDDTLRPSRGGQTIENLYAIGAVLGGFDPIAEGCGSGVAIVTALHAAEQIAE 415 (421)
T ss_pred cCcchhhhhhccccCCChhHHhCcccccccCccccchHHHHHHHHHHHhcCCcHHHhcCCcchHHHHHHHHHHHHHH
Confidence 000 0 00 124888888874 46899999999987421 22577778888877764
|
|
| >PRK07804 L-aspartate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=2.1e-08 Score=107.97 Aligned_cols=33 Identities=24% Similarity=0.345 Sum_probs=31.2
Q ss_pred CCccEEEECCChHHHHHHHHHHhCCCcEEEEcc
Q 008860 71 YDFDLFTIGAGSGGVRASRFAANFGASVAICEL 103 (551)
Q Consensus 71 ~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~ 103 (551)
.++||||||+|.||++||+.+++.|.+|+||||
T Consensus 15 ~~~DVlVIG~G~AGl~AAi~aae~G~~VilleK 47 (541)
T PRK07804 15 DAADVVVVGSGVAGLTAALAARRAGRRVLVVTK 47 (541)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCeEEEEEc
Confidence 368999999999999999999999999999995
|
|
| >PRK06854 adenylylsulfate reductase subunit alpha; Validated | Back alignment and domain information |
|---|
Probab=99.01 E-value=4.9e-09 Score=114.14 Aligned_cols=43 Identities=26% Similarity=0.271 Sum_probs=37.4
Q ss_pred CeEeC-------------CCCCCCCCcEEEeCcCCC--CCCChHHHHHhHHHHHHHHc
Q 008860 362 AIEVD-------------EYSGTAVPSIWAVGDVTD--RINLTPVALMEGGALAKTLF 404 (551)
Q Consensus 362 ~i~vd-------------~~~~t~~~~vya~GD~~~--~~~~~~~A~~~g~~aa~~i~ 404 (551)
+|.|| ++++|++|||||+|||++ ...+...+..+|++++.++.
T Consensus 371 Gi~vd~~~~~~~~~~~~~~~~~T~v~glyA~Ge~~~~~~~~l~~~s~~~g~~ag~~~~ 428 (608)
T PRK06854 371 GYWVSGPEDWVPEEYKWGYNRMTTVEGLFAAGDVVGGSPHKFSSGSFAEGRIAAKAAV 428 (608)
T ss_pred EEEecCcccccccccccccccccCCCCEEEeeecCCCCcchhHHHHHHHHHHHHHHHH
Confidence 48899 999999999999999985 35677888999999999876
|
|
| >PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=99.01 E-value=4.8e-09 Score=113.20 Aligned_cols=47 Identities=23% Similarity=0.375 Sum_probs=37.9
Q ss_pred CCCCeEeCCCCCCCCCcEEEeCcCCCCC--------CChHHHHHhHHHHHHHHcC
Q 008860 359 KNGAIEVDEYSGTAVPSIWAVGDVTDRI--------NLTPVALMEGGALAKTLFQ 405 (551)
Q Consensus 359 ~~G~i~vd~~~~t~~~~vya~GD~~~~~--------~~~~~A~~~g~~aa~~i~g 405 (551)
..|+|.||++.||++||+||+|++++.. .....|+..|++|++++..
T Consensus 347 t~GGi~vd~~~~t~IpGLyAaGE~~gg~hG~~rlgG~sl~~a~v~Gr~Ag~~aa~ 401 (543)
T PRK06263 347 FMGGIRINEDCETNIPGLFACGEVAGGVHGANRLGGNALADTQVFGAIAGKSAAK 401 (543)
T ss_pred ecCCEEECCCCcccCCCeEeccccccCCCCCCccchhhhhhhHHHHHHHHHHHHH
Confidence 3588999999999999999999997642 1123678899999999874
|
|
| >PRK09077 L-aspartate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=3.8e-09 Score=113.61 Aligned_cols=46 Identities=24% Similarity=0.377 Sum_probs=37.2
Q ss_pred CCCeEeCCCCCCCCCcEEEeCcCCC-CC--------CChHHHHHhHHHHHHHHcC
Q 008860 360 NGAIEVDEYSGTAVPSIWAVGDVTD-RI--------NLTPVALMEGGALAKTLFQ 405 (551)
Q Consensus 360 ~G~i~vd~~~~t~~~~vya~GD~~~-~~--------~~~~~A~~~g~~aa~~i~g 405 (551)
.|+|.||.+.||++|++||+|+|+. .. .....|...|++|++++..
T Consensus 353 ~GGi~vd~~~~t~I~GLyAaGE~a~~g~hGanrl~gnsl~~~~vfG~~Ag~~aa~ 407 (536)
T PRK09077 353 CGGVMVDLHGRTDLDGLYAIGEVSYTGLHGANRMASNSLLECLVYGRSAAEDILS 407 (536)
T ss_pred cCCeeECCCCccccCCEEecccccccccCCCccchhhhHHHHHHHHHHHHHHHHH
Confidence 5889999999999999999999974 21 2234577889999999864
|
|
| >PRK09231 fumarate reductase flavoprotein subunit; Validated | Back alignment and domain information |
|---|
Probab=98.99 E-value=9.7e-09 Score=111.37 Aligned_cols=47 Identities=21% Similarity=0.345 Sum_probs=37.5
Q ss_pred CCCCeEeCCCCCCCCCcEEEeCcCCC-CC--------CChHHHHHhHHHHHHHHcC
Q 008860 359 KNGAIEVDEYSGTAVPSIWAVGDVTD-RI--------NLTPVALMEGGALAKTLFQ 405 (551)
Q Consensus 359 ~~G~i~vd~~~~t~~~~vya~GD~~~-~~--------~~~~~A~~~g~~aa~~i~g 405 (551)
..|+|.||.+.+|++|++||+|||++ .. .....|+..|++|++++..
T Consensus 357 t~GGi~vd~~~~t~i~GLyAaGe~~~~g~hGanrlggnsl~~a~v~Gr~Ag~~aa~ 412 (582)
T PRK09231 357 TMGGIETDQNCETRIKGLFAVGECSSVGLHGANRLGSNSLAELVVFGRVAGEQAAE 412 (582)
T ss_pred eCCCEEECCCCccccCCEEecccccccccCCCCCcchhHHHHHHHHHHHHHHHHHH
Confidence 46899999999999999999999975 21 1223577889999998864
|
|
| >PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=98.97 E-value=4e-08 Score=100.32 Aligned_cols=60 Identities=18% Similarity=0.204 Sum_probs=49.2
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCcCCCC
Q 008860 285 DEDIRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNT 345 (551)
Q Consensus 285 ~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~~ 345 (551)
...+.+.+.+.+++.|++++.+++|+++..++++...|.+.+|+ +.+|.||+|+|.....
T Consensus 146 ~~~l~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~gv~~~~g~-i~ad~vV~a~G~~s~~ 205 (358)
T PF01266_consen 146 PRRLIQALAAEAQRAGVEIRTGTEVTSIDVDGGRVTGVRTSDGE-IRADRVVLAAGAWSPQ 205 (358)
T ss_dssp HHHHHHHHHHHHHHTT-EEEESEEEEEEEEETTEEEEEEETTEE-EEECEEEE--GGGHHH
T ss_pred ccchhhhhHHHHHHhhhhccccccccchhhcccccccccccccc-cccceeEeccccccee
Confidence 46778888999999999999999999999988773449999998 9999999999986544
|
1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A .... |
| >PRK07395 L-aspartate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=98.97 E-value=3.8e-09 Score=113.61 Aligned_cols=32 Identities=22% Similarity=0.392 Sum_probs=29.3
Q ss_pred CCccEEEECCChHHHHHHHHHHhCCCcEEEEcc
Q 008860 71 YDFDLFTIGAGSGGVRASRFAANFGASVAICEL 103 (551)
Q Consensus 71 ~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~ 103 (551)
.++||||||+|.||++||+.++ .|.+|+||||
T Consensus 8 ~e~DVlVVG~G~AGl~AAi~A~-~G~~V~lieK 39 (553)
T PRK07395 8 SQFDVLVVGSGAAGLYAALCLP-SHLRVGLITK 39 (553)
T ss_pred ccCCEEEECccHHHHHHHHHhh-cCCCEEEEEc
Confidence 4689999999999999999996 4999999995
|
|
| >COG0579 Predicted dehydrogenase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.95 E-value=2.9e-08 Score=101.29 Aligned_cols=60 Identities=22% Similarity=0.318 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEECCCeE-EEeeEEEEecCcCCCC
Q 008860 286 EDIRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTNKGTV-DGFSHVMFATGRRPNT 345 (551)
Q Consensus 286 ~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~G~~-i~~d~vi~a~G~~p~~ 345 (551)
.++...+.+.++++|++++++++|+.|+..+++...+.+.+|++ ++|+.||.|.|.....
T Consensus 153 ~~~t~~l~e~a~~~g~~i~ln~eV~~i~~~~dg~~~~~~~~g~~~~~ak~Vin~AGl~Ad~ 213 (429)
T COG0579 153 GELTRALAEEAQANGVELRLNTEVTGIEKQSDGVFVLNTSNGEETLEAKFVINAAGLYADP 213 (429)
T ss_pred HHHHHHHHHHHHHcCCEEEecCeeeEEEEeCCceEEEEecCCcEEEEeeEEEECCchhHHH
Confidence 45678888889999999999999999999888646678888876 9999999999986543
|
|
| >PRK08071 L-aspartate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.1e-08 Score=109.46 Aligned_cols=46 Identities=22% Similarity=0.380 Sum_probs=35.8
Q ss_pred CCCeEeCCCCCCCCCcEEEeCcCCC-C-C---CC----hHHHHHhHHHHHHHHcC
Q 008860 360 NGAIEVDEYSGTAVPSIWAVGDVTD-R-I---NL----TPVALMEGGALAKTLFQ 405 (551)
Q Consensus 360 ~G~i~vd~~~~t~~~~vya~GD~~~-~-~---~~----~~~A~~~g~~aa~~i~g 405 (551)
.|+|.||.+.||++|++||+|+|++ . . .+ ...+...|++|++++..
T Consensus 332 ~GGi~vd~~~~t~I~GLyAaGE~a~~g~hGanrl~g~sl~~~~v~G~~Ag~~aa~ 386 (510)
T PRK08071 332 MGGVKTNLDGETSIPGLYAIGEVACTGVHGANRLASNSLLEGLVFGKRAAEHILT 386 (510)
T ss_pred cCCEEECCCCcccCCCeEEcccccccccCCCcccchHHHHHHHHHHHHHHHHHHh
Confidence 4789999999999999999999974 2 1 12 23567778888888864
|
|
| >TIGR00136 gidA glucose-inhibited division protein A | Back alignment and domain information |
|---|
Probab=98.93 E-value=6.7e-08 Score=102.58 Aligned_cols=30 Identities=37% Similarity=0.604 Sum_probs=29.4
Q ss_pred ccEEEECCChHHHHHHHHHHhCCCcEEEEc
Q 008860 73 FDLFTIGAGSGGVRASRFAANFGASVAICE 102 (551)
Q Consensus 73 ~dVvIIGgG~aGl~aA~~l~~~G~~V~liE 102 (551)
|||+|||||+||+.+|..+++.|.+|+|+|
T Consensus 1 yDViVIGaG~AGl~aA~ala~~G~~v~Lie 30 (617)
T TIGR00136 1 FDVIVIGGGHAGCEAALAAARMGAKTLLLT 30 (617)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCCEEEEe
Confidence 699999999999999999999999999999
|
GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137). |
| >PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=98.93 E-value=2.1e-08 Score=108.91 Aligned_cols=32 Identities=28% Similarity=0.396 Sum_probs=30.4
Q ss_pred CccEEEECCChHHHHHHHHHHhCCCcEEEEcc
Q 008860 72 DFDLFTIGAGSGGVRASRFAANFGASVAICEL 103 (551)
Q Consensus 72 ~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~ 103 (551)
+.||||||+|.||++||+.+++.|.+|+||||
T Consensus 3 ~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lieK 34 (589)
T PRK08641 3 KGKVIVVGGGLAGLMATIKAAEAGVHVDLFSL 34 (589)
T ss_pred CccEEEECchHHHHHHHHHHHHcCCcEEEEEc
Confidence 46999999999999999999999999999995
|
|
| >TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit | Back alignment and domain information |
|---|
Probab=98.92 E-value=9.6e-09 Score=111.17 Aligned_cols=47 Identities=21% Similarity=0.272 Sum_probs=37.6
Q ss_pred CCCCeEeCCCCCCCCCcEEEeCcCCC-C-C-------CChHHHHHhHHHHHHHHcC
Q 008860 359 KNGAIEVDEYSGTAVPSIWAVGDVTD-R-I-------NLTPVALMEGGALAKTLFQ 405 (551)
Q Consensus 359 ~~G~i~vd~~~~t~~~~vya~GD~~~-~-~-------~~~~~A~~~g~~aa~~i~g 405 (551)
..|+|.+|++.+|++|++||+|+|++ . . .....|...|++|++++..
T Consensus 356 ~~GGi~~d~~~~t~i~GLyAaGe~a~~G~hGanrl~g~sl~~~~v~G~~ag~~aa~ 411 (580)
T TIGR01176 356 TMGGIETDINCETRIKGLFAVGECASVGLHGANRLGSNSLAELVVFGRRAGEAAAE 411 (580)
T ss_pred cCCCeeECcCcccccCCeEeeecccccCcCCCccccchhHHHHHHHHHHHHHHHHH
Confidence 35889999999999999999999974 2 1 2234678889999998864
|
The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model. |
| >PRK11728 hydroxyglutarate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=98.91 E-value=7.9e-08 Score=99.81 Aligned_cols=58 Identities=19% Similarity=0.260 Sum_probs=48.9
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCcCCC
Q 008860 285 DEDIRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPN 344 (551)
Q Consensus 285 ~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~ 344 (551)
...+.+.+.+.+++.|++++++++|.+++.++++ +.|.+.+| ++.+|.||+|+|....
T Consensus 148 ~~~l~~aL~~~~~~~Gv~i~~~~~V~~i~~~~~~-~~V~~~~g-~i~ad~vV~A~G~~s~ 205 (393)
T PRK11728 148 YRAVAEAMAELIQARGGEIRLGAEVTALDEHANG-VVVRTTQG-EYEARTLINCAGLMSD 205 (393)
T ss_pred HHHHHHHHHHHHHhCCCEEEcCCEEEEEEecCCe-EEEEECCC-EEEeCEEEECCCcchH
Confidence 4567788889999999999999999999876655 67788777 5999999999998763
|
|
| >PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.3e-07 Score=102.43 Aligned_cols=34 Identities=26% Similarity=0.404 Sum_probs=31.5
Q ss_pred CCccEEEECCChHHHHHHHHHHhCCCcEEEEccC
Q 008860 71 YDFDLFTIGAGSGGVRASRFAANFGASVAICELP 104 (551)
Q Consensus 71 ~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~ 104 (551)
.++||||||+|.||++||+.+++.|.+|+||||.
T Consensus 4 ~~~DVvVVG~G~AGl~AAl~Aae~G~~V~lveK~ 37 (566)
T PRK06452 4 IEYDAVVIGGGLAGLMSAHEIASAGFKVAVISKV 37 (566)
T ss_pred ccCcEEEECccHHHHHHHHHHHHCCCcEEEEEcc
Confidence 3589999999999999999999999999999953
|
|
| >TIGR01377 soxA_mon sarcosine oxidase, monomeric form | Back alignment and domain information |
|---|
Probab=98.91 E-value=9.9e-08 Score=98.68 Aligned_cols=57 Identities=18% Similarity=0.136 Sum_probs=46.7
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCcCC
Q 008860 285 DEDIRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRP 343 (551)
Q Consensus 285 ~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p 343 (551)
+..+.+.+.+.+++.|++++.+++|++++.+++. +.|.+.++ ++.+|.||+|+|...
T Consensus 144 p~~~~~~l~~~~~~~g~~~~~~~~V~~i~~~~~~-~~v~~~~~-~i~a~~vV~aaG~~~ 200 (380)
T TIGR01377 144 AEKALRALQELAEAHGATVRDGTKVVEIEPTELL-VTVKTTKG-SYQANKLVVTAGAWT 200 (380)
T ss_pred HHHHHHHHHHHHHHcCCEEECCCeEEEEEecCCe-EEEEeCCC-EEEeCEEEEecCcch
Confidence 3456677888888899999999999999876655 66777776 599999999999764
|
Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms |
| >PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.8e-07 Score=101.70 Aligned_cols=33 Identities=33% Similarity=0.512 Sum_probs=30.7
Q ss_pred CCccEEEECCChHHHHHHHHHHhCC---CcEEEEcc
Q 008860 71 YDFDLFTIGAGSGGVRASRFAANFG---ASVAICEL 103 (551)
Q Consensus 71 ~~~dVvIIGgG~aGl~aA~~l~~~G---~~V~liE~ 103 (551)
.++||+|||||.||++||+.+++.| .+|+||||
T Consensus 4 ~~~DVlVVG~G~AGl~AA~~Aa~~G~~~~~V~lleK 39 (577)
T PRK06069 4 LKYDVVIVGSGLAGLRAAVAAAERSGGKLSVAVVSK 39 (577)
T ss_pred eecCEEEECccHHHHHHHHHHHHhCCCCCcEEEEEc
Confidence 3589999999999999999999998 89999995
|
|
| >COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.91 E-value=2.2e-08 Score=90.40 Aligned_cols=32 Identities=38% Similarity=0.593 Sum_probs=30.3
Q ss_pred CccEEEECCChHHHHHHHHHHhCCCcEEEEcc
Q 008860 72 DFDLFTIGAGSGGVRASRFAANFGASVAICEL 103 (551)
Q Consensus 72 ~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~ 103 (551)
+-||+|+||||+||+||++|++.|+||+|+|+
T Consensus 30 esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~ 61 (262)
T COG1635 30 ESDVIIVGAGPSGLTAAYYLAKAGLKVAIFER 61 (262)
T ss_pred hccEEEECcCcchHHHHHHHHhCCceEEEEEe
Confidence 46999999999999999999999999999993
|
|
| >PRK09897 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.91 E-value=1e-07 Score=101.24 Aligned_cols=181 Identities=12% Similarity=0.023 Sum_probs=88.8
Q ss_pred ccEEEECCChHHHHHHHHHHhCC--CcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhh----------hhhhH
Q 008860 73 FDLFTIGAGSGGVRASRFAANFG--ASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYAS----------KFSHE 140 (551)
Q Consensus 73 ~dVvIIGgG~aGl~aA~~l~~~G--~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~----------~~~~~ 140 (551)
++|+|||||++|+++|.+|.+.+ .+|+|||+ ...+|.-..+...-|+..++... .+.+.
T Consensus 2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp---------~~~~G~G~ays~~~~~~~L~~N~~~~~~p~~~~~f~~W 72 (534)
T PRK09897 2 KKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQ---------ADEAGVGMPYSDEENSKMMLANIASIEIPPIYCTYLEW 72 (534)
T ss_pred CeEEEECCcHHHHHHHHHHHhcCCCCcEEEEec---------CCCCCcceeecCCCChHHHHhcccccccCCChHHHHHH
Confidence 58999999999999999998854 58999992 23345333322222222222110 00000
Q ss_pred hhh-----ccCCCcccC--CCCCCChHH-HHHHHHHHHHHHHHHHHHHHHhCC--eEEEEe-EEEEec--CCE--EEE-c
Q 008860 141 FDE-----SNGFGWKYG--TEPQHDWST-LIANKNAELQRLTGIYKNILINAG--ITLIEG-RGKIVD--PHT--VDV-D 204 (551)
Q Consensus 141 ~~~-----~~~~g~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~--v~~~~~-~~~~i~--~~~--v~v-~ 204 (551)
... +..++.... ....+-... +-.+....+ ..+.+.+...| +.++.. ++..+. ... +.. +
T Consensus 73 l~~~~~~~~~~~g~~~~~l~~~~f~PR~l~G~YL~~~f----~~l~~~a~~~G~~V~v~~~~~V~~I~~~~~g~~V~t~~ 148 (534)
T PRK09897 73 LQKQEDSHLQRYGVKKETLHDRQFLPRILLGEYFRDQF----LRLVDQARQQKFAVAVYESCQVTDLQITNAGVMLATNQ 148 (534)
T ss_pred hhhhhHHHHHhcCCcceeecCCccCCeecchHHHHHHH----HHHHHHHHHcCCeEEEEECCEEEEEEEeCCEEEEEECC
Confidence 000 001111100 000011111 111122222 22223344445 566544 455543 222 333 3
Q ss_pred -CEEEEeCeEEEcCCCCCCCCCCCCCC-ceecchhhhcC-CCCCCeEEEEcCcHHHHHHHHHHHhC
Q 008860 205 -GKLYSARHILISVGGRPFIPDIPGSE-YAIDSDAALDL-PSKPEKIAIVGGGYIALEFAGIFSGL 267 (551)
Q Consensus 205 -g~~~~~d~lviAtG~~p~~p~i~g~~-~~~~~~~~~~~-~~~~~~vvViG~G~~g~e~a~~l~~~ 267 (551)
+..+.+|+||+|||..+..+. ++.. ++.+....... ...+.+|+|+|.|.++++++..|...
T Consensus 149 gg~~i~aD~VVLAtGh~~p~~~-~~~~~yi~~pw~~~~~~~i~~~~V~I~GtGLt~iD~v~~Lt~~ 213 (534)
T PRK09897 149 DLPSETFDLAVIATGHVWPDEE-EATRTYFPSPWSGLMEAKVDACNVGIMGTSLSGLDAAMAVAIQ 213 (534)
T ss_pred CCeEEEcCEEEECCCCCCCCCC-hhhccccCCCCcchhhcCCCCCeEEEECCCHHHHHHHHHHHhc
Confidence 467899999999996432111 1111 11111111111 11258999999999999999888755
|
|
| >TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.1e-07 Score=103.48 Aligned_cols=30 Identities=37% Similarity=0.511 Sum_probs=29.1
Q ss_pred cEEEECCChHHHHHHHHHHhCCCcEEEEcc
Q 008860 74 DLFTIGAGSGGVRASRFAANFGASVAICEL 103 (551)
Q Consensus 74 dVvIIGgG~aGl~aA~~l~~~G~~V~liE~ 103 (551)
||||||+|.||++||+.+++.|.+|+||||
T Consensus 1 DVlVVG~G~AGl~AA~~aae~G~~V~lleK 30 (566)
T TIGR01812 1 DVVIVGAGLAGLRAAVEAAKAGLNTAVISK 30 (566)
T ss_pred CEEEECccHHHHHHHHHHHHCCCcEEEEec
Confidence 899999999999999999999999999995
|
This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase. |
| >PLN02815 L-aspartate oxidase | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.7e-08 Score=109.05 Aligned_cols=32 Identities=38% Similarity=0.592 Sum_probs=30.0
Q ss_pred CCccEEEECCChHHHHHHHHHHhCCCcEEEEcc
Q 008860 71 YDFDLFTIGAGSGGVRASRFAANFGASVAICEL 103 (551)
Q Consensus 71 ~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~ 103 (551)
.++||||||+|.|||+||+.+++.| +|+||||
T Consensus 28 ~~~DVlVVG~G~AGl~AAl~Aae~G-~VvlleK 59 (594)
T PLN02815 28 KYFDFLVIGSGIAGLRYALEVAEYG-TVAIITK 59 (594)
T ss_pred cccCEEEECccHHHHHHHHHHhhCC-CEEEEEC
Confidence 4689999999999999999999999 9999995
|
|
| >PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.89 E-value=6.2e-08 Score=104.44 Aligned_cols=61 Identities=28% Similarity=0.429 Sum_probs=51.1
Q ss_pred CCccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCeeccCC---CcchHHHHHhhhhhhHh
Q 008860 71 YDFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRG---CVPKKLLVYASKFSHEF 141 (551)
Q Consensus 71 ~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~~~~g---~~p~~~l~~~~~~~~~~ 141 (551)
.++||||||+| +|++||+.+++.|.+|+|||| ...+||+|.+.| |+|.+.+..........
T Consensus 15 ~e~DvvvvG~G-~G~~aA~~a~~~G~~v~v~Ek---------~~~~GG~~~~~gG~~~~~~~~~~~~~g~~ds~ 78 (564)
T PRK12845 15 TTVDLLVVGSG-TGMAAALAAHELGLSVLIVEK---------SSYVGGSTARSGGAFWLPASPVLDEAGAGDTL 78 (564)
T ss_pred ceeCEEEECCc-HHHHHHHHHHHCCCcEEEEec---------CCCCcCcccCcCCCEecCChHHHHHhCcchhH
Confidence 37999999999 899999999999999999994 557999999988 88988776655444333
|
|
| >PRK12409 D-amino acid dehydrogenase small subunit; Provisional | Back alignment and domain information |
|---|
Probab=98.89 E-value=5.9e-08 Score=101.45 Aligned_cols=57 Identities=14% Similarity=0.215 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEECCC-----eEEEeeEEEEecCcCC
Q 008860 286 EDIRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTNKG-----TVDGFSHVMFATGRRP 343 (551)
Q Consensus 286 ~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~G-----~~i~~d~vi~a~G~~p 343 (551)
..+...+.+.+++.|++++.+++|++++.++++ +.+.+.++ .++.+|.||+|+|...
T Consensus 197 ~~~~~~l~~~a~~~G~~i~~~~~V~~i~~~~~~-~~v~~~~~~~~~~~~i~a~~vV~a~G~~s 258 (410)
T PRK12409 197 HKFTTGLAAACARLGVQFRYGQEVTSIKTDGGG-VVLTVQPSAEHPSRTLEFDGVVVCAGVGS 258 (410)
T ss_pred HHHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCE-EEEEEEcCCCCccceEecCEEEECCCcCh
Confidence 355677788889999999999999999876555 55544332 3689999999999864
|
|
| >TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.3e-07 Score=100.25 Aligned_cols=57 Identities=14% Similarity=0.064 Sum_probs=46.1
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCcCCC
Q 008860 285 DEDIRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPN 344 (551)
Q Consensus 285 ~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~ 344 (551)
+..+...+.+.+++.|++++.++.|++++. ++. +.|.+.+| ++.+|.||+|+|....
T Consensus 182 P~~l~~~L~~~a~~~Gv~i~~~t~V~~i~~-~~~-~~v~t~~g-~v~A~~VV~Atga~s~ 238 (460)
T TIGR03329 182 PGLLVRGLRRVALELGVEIHENTPMTGLEE-GQP-AVVRTPDG-QVTADKVVLALNAWMA 238 (460)
T ss_pred HHHHHHHHHHHHHHcCCEEECCCeEEEEee-CCc-eEEEeCCc-EEECCEEEEccccccc
Confidence 445678888889999999999999999975 333 56778777 4999999999997643
|
This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW. |
| >PRK11259 solA N-methyltryptophan oxidase; Provisional | Back alignment and domain information |
|---|
Probab=98.88 E-value=8.3e-08 Score=99.09 Aligned_cols=57 Identities=21% Similarity=0.176 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCcCCC
Q 008860 286 EDIRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPN 344 (551)
Q Consensus 286 ~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~ 344 (551)
..+...+.+.+.+.|++++.+++|+++..++++ +.|.+.+| .+.+|.||+|+|....
T Consensus 149 ~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~-~~v~~~~g-~~~a~~vV~A~G~~~~ 205 (376)
T PRK11259 149 ELAIKAHLRLAREAGAELLFNEPVTAIEADGDG-VTVTTADG-TYEAKKLVVSAGAWVK 205 (376)
T ss_pred HHHHHHHHHHHHHCCCEEECCCEEEEEEeeCCe-EEEEeCCC-EEEeeEEEEecCcchh
Confidence 455666777788899999999999999886665 77888888 5999999999998643
|
|
| >PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.3e-08 Score=107.99 Aligned_cols=32 Identities=28% Similarity=0.537 Sum_probs=30.9
Q ss_pred CCccEEEECCChHHHHHHHHHHhCCCcEEEEc
Q 008860 71 YDFDLFTIGAGSGGVRASRFAANFGASVAICE 102 (551)
Q Consensus 71 ~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE 102 (551)
.+|||+|||||+||+.||..+++.|.+|+|||
T Consensus 3 ~~yDVIVVGGGpAG~eAA~~aAR~G~kV~LiE 34 (618)
T PRK05192 3 EEYDVIVVGGGHAGCEAALAAARMGAKTLLLT 34 (618)
T ss_pred ccceEEEECchHHHHHHHHHHHHcCCcEEEEe
Confidence 46999999999999999999999999999999
|
|
| >TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit | Back alignment and domain information |
|---|
Probab=98.85 E-value=3.3e-08 Score=106.92 Aligned_cols=38 Identities=21% Similarity=0.240 Sum_probs=31.6
Q ss_pred CCCCCCCCcEEEeCcCCCC--CCChHHHHHhHHHHHHHHc
Q 008860 367 EYSGTAVPSIWAVGDVTDR--INLTPVALMEGGALAKTLF 404 (551)
Q Consensus 367 ~~~~t~~~~vya~GD~~~~--~~~~~~A~~~g~~aa~~i~ 404 (551)
.+.+|++|++||+|||+.. ..++..+..+|.+++.++.
T Consensus 400 ~~~~T~i~gLyA~Ge~~~~~~h~l~~nsl~eg~~ag~~a~ 439 (614)
T TIGR02061 400 YNRMTTVEGLFTCGDGVGASPHKFSSGSFTEGRIAAKAAV 439 (614)
T ss_pred cCCccccCCEEeceecccCcchhhHHhHHHHHHHHHHHHH
Confidence 7778999999999999763 3567788888999988875
|
During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins. |
| >PRK06847 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.85 E-value=5.6e-08 Score=100.30 Aligned_cols=59 Identities=20% Similarity=0.304 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCcCCCC
Q 008860 286 EDIRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNT 345 (551)
Q Consensus 286 ~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~~ 345 (551)
.++.+.+.+.+++.|++++++++|++++.++++ +.+.+.+|+++.+|.||.|.|..+..
T Consensus 107 ~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~-~~v~~~~g~~~~ad~vI~AdG~~s~~ 165 (375)
T PRK06847 107 PALARILADAARAAGADVRLGTTVTAIEQDDDG-VTVTFSDGTTGRYDLVVGADGLYSKV 165 (375)
T ss_pred HHHHHHHHHHHHHhCCEEEeCCEEEEEEEcCCE-EEEEEcCCCEEEcCEEEECcCCCcch
Confidence 456777888888889999999999999877665 77888899899999999999998765
|
|
| >PRK07512 L-aspartate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=98.83 E-value=3.7e-08 Score=105.35 Aligned_cols=46 Identities=24% Similarity=0.421 Sum_probs=36.0
Q ss_pred CCCeEeCCCCCCCCCcEEEeCcCCC-CC----C----ChHHHHHhHHHHHHHHcC
Q 008860 360 NGAIEVDEYSGTAVPSIWAVGDVTD-RI----N----LTPVALMEGGALAKTLFQ 405 (551)
Q Consensus 360 ~G~i~vd~~~~t~~~~vya~GD~~~-~~----~----~~~~A~~~g~~aa~~i~g 405 (551)
.|+|.||.+.+|++|++||+|+|+. .. . ....|...|+++++++..
T Consensus 341 ~GGi~vd~~~~t~I~GLyAaGE~a~~G~hGanrl~gnsl~~~~v~G~~ag~~aa~ 395 (513)
T PRK07512 341 MGGIAVDADGRSSLPGLWAAGEVASTGLHGANRLASNSLLEAVVFAARAAEDIAG 395 (513)
T ss_pred cCCEEECCCCccccCCEEecccccccCCCcccchHHHHHHHHHHHHHHHHHHHHH
Confidence 4789999999999999999999973 21 1 123467788999998864
|
|
| >PRK08626 fumarate reductase flavoprotein subunit; Provisional | Back alignment and domain information |
|---|
Probab=98.83 E-value=2e-08 Score=110.07 Aligned_cols=32 Identities=34% Similarity=0.431 Sum_probs=30.7
Q ss_pred CccEEEECCChHHHHHHHHHHhCCCcEEEEcc
Q 008860 72 DFDLFTIGAGSGGVRASRFAANFGASVAICEL 103 (551)
Q Consensus 72 ~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~ 103 (551)
.+||||||||.||++||+.+++.|.+|+||||
T Consensus 5 ~~DVlVIG~G~AGl~AAi~Aae~G~~VivleK 36 (657)
T PRK08626 5 YTDALVIGAGLAGLRVAIAAAQRGLDTIVLSL 36 (657)
T ss_pred eccEEEECccHHHHHHHHHHHHcCCCEEEEeC
Confidence 58999999999999999999999999999995
|
|
| >PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=98.80 E-value=8.1e-08 Score=99.74 Aligned_cols=58 Identities=14% Similarity=0.188 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCcCCCC
Q 008860 287 DIRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNT 345 (551)
Q Consensus 287 ~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~~ 345 (551)
.+.+.+.+.+++.|++++.+++|++++.++++ +.|++.+|+++.+|.||.|.|..+..
T Consensus 114 ~l~~~L~~~~~~~gv~i~~~~~v~~i~~~~~~-v~v~~~~g~~~~a~~vV~AdG~~S~v 171 (392)
T PRK08773 114 LLVDRLWAALHAAGVQLHCPARVVALEQDADR-VRLRLDDGRRLEAALAIAADGAASTL 171 (392)
T ss_pred HHHHHHHHHHHhCCCEEEcCCeEEEEEecCCe-EEEEECCCCEEEeCEEEEecCCCchH
Confidence 45677778888899999999999999887666 67888888889999999999998854
|
|
| >TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup | Back alignment and domain information |
|---|
Probab=98.79 E-value=3.3e-08 Score=107.55 Aligned_cols=46 Identities=20% Similarity=0.169 Sum_probs=36.2
Q ss_pred CCCeEeCCCCCCCCCcEEEeCcCCCCC----C----ChHHHHHhHHHHHHHHcC
Q 008860 360 NGAIEVDEYSGTAVPSIWAVGDVTDRI----N----LTPVALMEGGALAKTLFQ 405 (551)
Q Consensus 360 ~G~i~vd~~~~t~~~~vya~GD~~~~~----~----~~~~A~~~g~~aa~~i~g 405 (551)
.|+|.+|.+.+|++|++||+|+|++.. . ....+...|++|+.++..
T Consensus 370 ~gG~~~d~~~~t~i~gL~a~Ge~~~~~hg~nrl~~~sl~~~~v~g~~Ag~~aa~ 423 (603)
T TIGR01811 370 MGGLWVDYDQMTNIPGLFAAGECDFSQHGANRLGANSLLSAIADGYFALPFTIP 423 (603)
T ss_pred CCCeeECCCCcccCCCEEECcccccCcCCCccchhHHHHHHHHHHHHHHHHHHH
Confidence 488999999999999999999997532 1 223577788888888753
|
This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes. |
| >PRK10157 putative oxidoreductase FixC; Provisional | Back alignment and domain information |
|---|
Probab=98.79 E-value=1.5e-07 Score=98.53 Aligned_cols=55 Identities=16% Similarity=0.194 Sum_probs=42.7
Q ss_pred HHHHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCcCC
Q 008860 288 IRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRP 343 (551)
Q Consensus 288 ~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p 343 (551)
+-+.+.+.+++.|++++.+++|+++..+++. +.+...+|+++.+|.||.|+|...
T Consensus 110 fD~~L~~~a~~~Gv~i~~~~~V~~i~~~~g~-v~~v~~~g~~i~A~~VI~A~G~~s 164 (428)
T PRK10157 110 FDAWLMEQAEEAGAQLITGIRVDNLVQRDGK-VVGVEADGDVIEAKTVILADGVNS 164 (428)
T ss_pred HHHHHHHHHHHCCCEEECCCEEEEEEEeCCE-EEEEEcCCcEEECCEEEEEeCCCH
Confidence 4456677778899999999999999876555 333345667899999999999854
|
|
| >PRK00711 D-amino acid dehydrogenase small subunit; Validated | Back alignment and domain information |
|---|
Probab=98.79 E-value=1.9e-07 Score=97.78 Aligned_cols=57 Identities=18% Similarity=0.170 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCcCC
Q 008860 286 EDIRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRP 343 (551)
Q Consensus 286 ~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p 343 (551)
..+...+.+.++++|++++.+++|++++.++++...|++.++ ++.+|.||+|+|...
T Consensus 201 ~~~~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~v~t~~~-~~~a~~VV~a~G~~~ 257 (416)
T PRK00711 201 QLFTQRLAAMAEQLGVKFRFNTPVDGLLVEGGRITGVQTGGG-VITADAYVVALGSYS 257 (416)
T ss_pred HHHHHHHHHHHHHCCCEEEcCCEEEEEEecCCEEEEEEeCCc-EEeCCEEEECCCcch
Confidence 356677888889999999999999999876665345666655 699999999999864
|
|
| >TIGR01292 TRX_reduct thioredoxin-disulfide reductase | Back alignment and domain information |
|---|
Probab=98.78 E-value=8e-08 Score=95.80 Aligned_cols=99 Identities=21% Similarity=0.207 Sum_probs=82.2
Q ss_pred eEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCc---c--------CCCC-----CHHHHHHHHHHHHhcCcEEEcCcccE
Q 008860 247 KIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKK---V--------LRGF-----DEDIRDFVAEQMSLRGIEFHTEESPQ 310 (551)
Q Consensus 247 ~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~---~--------l~~~-----~~~~~~~l~~~l~~~Gv~i~~~~~v~ 310 (551)
+++|||+|+.|+++|..|.+.|.+|+++++.+. + .+.+ +.++...+.+.+++.|+++++ ++|+
T Consensus 2 dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~~~-~~v~ 80 (300)
T TIGR01292 2 DVIIIGAGPAGLTAAIYAARANLKTLIIEGMEPGGQLTTTTEVENYPGFPEGISGPELMEKMKEQAVKFGAEIIY-EEVI 80 (300)
T ss_pred cEEEECCCHHHHHHHHHHHHCCCCEEEEeccCCCcceeecccccccCCCCCCCChHHHHHHHHHHHHHcCCeEEE-EEEE
Confidence 589999999999999999999999999997651 1 1222 357778888899999999998 7999
Q ss_pred EEEEcCCceEEEEECCCeEEEeeEEEEecCcCCCCCC
Q 008860 311 AILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNTKN 347 (551)
Q Consensus 311 ~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~~~~ 347 (551)
+++.+++. ..|.+.+++++.+|.+|+|+|..|+...
T Consensus 81 ~v~~~~~~-~~v~~~~~~~~~~d~liiAtG~~~~~~~ 116 (300)
T TIGR01292 81 KVDLSDRP-FKVKTGDGKEYTAKAVIIATGASARKLG 116 (300)
T ss_pred EEEecCCe-eEEEeCCCCEEEeCEEEECCCCCcccCC
Confidence 99886654 6788888888999999999999887543
|
This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070). |
| >TIGR00275 flavoprotein, HI0933 family | Back alignment and domain information |
|---|
Probab=98.78 E-value=1.1e-07 Score=98.79 Aligned_cols=58 Identities=26% Similarity=0.367 Sum_probs=47.3
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCcCCC
Q 008860 285 DEDIRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPN 344 (551)
Q Consensus 285 ~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~ 344 (551)
..++.+.+.+.+++.|++++.++.|+++..+++. +.+.+ +++++.+|.||+|+|....
T Consensus 104 a~~v~~~L~~~l~~~gv~i~~~~~V~~i~~~~~~-~~v~~-~~~~i~ad~VIlAtG~~s~ 161 (400)
T TIGR00275 104 AADVLDALLNELKELGVEILTNSKVKSIKKDDNG-FGVET-SGGEYEADKVILATGGLSY 161 (400)
T ss_pred HHHHHHHHHHHHHHCCCEEEeCCEEEEEEecCCe-EEEEE-CCcEEEcCEEEECCCCccc
Confidence 4567788888999999999999999999776554 66766 4557999999999998653
|
The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae. |
| >PRK08163 salicylate hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=98.77 E-value=8.9e-08 Score=99.61 Aligned_cols=57 Identities=19% Similarity=0.147 Sum_probs=46.5
Q ss_pred HHHHHHHHHHhc-CcEEEcCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCcCCCC
Q 008860 288 IRDFVAEQMSLR-GIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNT 345 (551)
Q Consensus 288 ~~~~l~~~l~~~-Gv~i~~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~~ 345 (551)
+.+.+.+.+.+. +++++.++++++++.++++ +.+.+.+|+++.+|.||.|.|..+..
T Consensus 111 l~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~-v~v~~~~g~~~~ad~vV~AdG~~S~~ 168 (396)
T PRK08163 111 IHLSLLEAVLDHPLVEFRTSTHVVGIEQDGDG-VTVFDQQGNRWTGDALIGCDGVKSVV 168 (396)
T ss_pred HHHHHHHHHHhcCCcEEEeCCEEEEEecCCCc-eEEEEcCCCEEecCEEEECCCcChHH
Confidence 455666666665 4999999999999876665 77888899889999999999997755
|
|
| >COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.75 E-value=1.2e-07 Score=98.39 Aligned_cols=57 Identities=16% Similarity=0.160 Sum_probs=45.7
Q ss_pred HHHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCcCCCC
Q 008860 289 RDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNT 345 (551)
Q Consensus 289 ~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~~ 345 (551)
-+++.+..++.|++++.++++..+..++++.+.....++.++.++.||.|.|.....
T Consensus 98 d~~La~~A~~aGae~~~~~~~~~~~~~~~~~~~~~~~~~~e~~a~~vI~AdG~~s~l 154 (396)
T COG0644 98 DKWLAERAEEAGAELYPGTRVTGVIREDDGVVVGVRAGDDEVRAKVVIDADGVNSAL 154 (396)
T ss_pred hHHHHHHHHHcCCEEEeceEEEEEEEeCCcEEEEEEcCCEEEEcCEEEECCCcchHH
Confidence 346777788899999999999999988877444455555689999999999986644
|
|
| >PF00890 FAD_binding_2: FAD binding domain of the Pfam family | Back alignment and domain information |
|---|
Probab=98.72 E-value=1.3e-07 Score=99.01 Aligned_cols=60 Identities=13% Similarity=0.173 Sum_probs=45.4
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEEC---CCe--EEEeeEEEEecCcCCC
Q 008860 285 DEDIRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTN---KGT--VDGFSHVMFATGRRPN 344 (551)
Q Consensus 285 ~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~---~G~--~i~~d~vi~a~G~~p~ 344 (551)
...+.+.+.+.+++.|+++++++.++++..+++.++.|... +|+ ++.++.||+|+|-...
T Consensus 140 g~~~~~~l~~~~~~~gv~i~~~~~~~~Li~e~g~V~Gv~~~~~~~g~~~~i~A~aVIlAtGG~~~ 204 (417)
T PF00890_consen 140 GKALIEALAKAAEEAGVDIRFNTRVTDLITEDGRVTGVVAENPADGEFVRIKAKAVILATGGFGG 204 (417)
T ss_dssp HHHHHHHHHHHHHHTTEEEEESEEEEEEEEETTEEEEEEEEETTTCEEEEEEESEEEE----BGG
T ss_pred HHHHHHHHHHHHhhcCeeeeccceeeeEEEeCCceeEEEEEECCCCeEEEEeeeEEEeccCcccc
Confidence 45677888999999999999999999999987766666654 555 5789999999998665
|
; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A .... |
| >PTZ00383 malate:quinone oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=98.72 E-value=6.9e-07 Score=94.47 Aligned_cols=58 Identities=16% Similarity=0.182 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHh----cC--cEEEcCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCcCCC
Q 008860 286 EDIRDFVAEQMSL----RG--IEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPN 344 (551)
Q Consensus 286 ~~~~~~l~~~l~~----~G--v~i~~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~ 344 (551)
..+...+.+.+++ .| ++++++++|++|+.++++.+.|.+.+| ++.+|.||+|+|....
T Consensus 211 ~~L~~al~~~a~~~~~~~G~~v~i~~~t~V~~I~~~~~~~~~V~T~~G-~i~A~~VVvaAG~~S~ 274 (497)
T PTZ00383 211 QKLSESFVKHARRDALVPGKKISINLNTEVLNIERSNDSLYKIHTNRG-EIRARFVVVSACGYSL 274 (497)
T ss_pred HHHHHHHHHHHHhhhhhcCCCEEEEeCCEEEEEEecCCCeEEEEECCC-EEEeCEEEECcChhHH
Confidence 3567778888888 77 889999999999987555477888888 5999999999997654
|
|
| >PRK08274 tricarballylate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.71 E-value=7.5e-07 Score=94.71 Aligned_cols=57 Identities=12% Similarity=0.123 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEE--CCC--eEEEeeEEEEecCcCC
Q 008860 287 DIRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKT--NKG--TVDGFSHVMFATGRRP 343 (551)
Q Consensus 287 ~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~--~~G--~~i~~d~vi~a~G~~p 343 (551)
.+...+.+.+++.|++++++++++++..+++.++.|.. .++ ..+.++.||+|+|...
T Consensus 132 ~l~~~l~~~~~~~gv~i~~~t~v~~l~~~~g~v~gv~~~~~~g~~~~i~a~~VIlAtGg~~ 192 (466)
T PRK08274 132 ALVNALYRSAERLGVEIRYDAPVTALELDDGRFVGARAGSAAGGAERIRAKAVVLAAGGFE 192 (466)
T ss_pred HHHHHHHHHHHHCCCEEEcCCEEEEEEecCCeEEEEEEEccCCceEEEECCEEEECCCCCC
Confidence 45666777888899999999999999876555455554 233 3578999999998644
|
|
| >PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.71 E-value=4.4e-07 Score=98.09 Aligned_cols=60 Identities=13% Similarity=0.161 Sum_probs=45.2
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEE-CCCe--EEEee-EEEEecCcCCC
Q 008860 285 DEDIRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKT-NKGT--VDGFS-HVMFATGRRPN 344 (551)
Q Consensus 285 ~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~-~~G~--~i~~d-~vi~a~G~~p~ 344 (551)
...+...+.+.+++.|+++++++.++++..+++.++.|.. .+|+ .+.++ .||+|+|-..+
T Consensus 207 G~~l~~~l~~~~~~~gv~i~~~~~v~~Li~~~g~v~Gv~~~~~g~~~~i~A~~aVIlAtGG~~~ 270 (557)
T PRK12844 207 GAALIGRMLEAALAAGVPLWTNTPLTELIVEDGRVVGVVVVRDGREVLIRARRGVLLASGGFGH 270 (557)
T ss_pred cHHHHHHHHHHHHhCCCEEEeCCEEEEEEEeCCEEEEEEEEECCeEEEEEecceEEEecCCccC
Confidence 5567778888899999999999999999876655555544 3454 46774 79999987654
|
|
| >COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.71 E-value=2.9e-07 Score=95.35 Aligned_cols=58 Identities=16% Similarity=0.196 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHhcC-cEEEcCcccEEEEEcCCceEEEEEC-CCeEEEeeEEEEecCcCCCC
Q 008860 287 DIRDFVAEQMSLRG-IEFHTEESPQAILKSTDGSLSVKTN-KGTVDGFSHVMFATGRRPNT 345 (551)
Q Consensus 287 ~~~~~l~~~l~~~G-v~i~~~~~v~~i~~~~~~~~~V~~~-~G~~i~~d~vi~a~G~~p~~ 345 (551)
++.+.+.+.+.+.+ |+++.+++|+.++.+++. +.+++. +|+++.||.||-|=|.+...
T Consensus 105 ~l~~~L~~~~~~~~~v~~~~~~~v~~~~~~~~~-v~v~l~~dG~~~~a~llVgADG~~S~v 164 (387)
T COG0654 105 DLLNALLEAARALPNVTLRFGAEVEAVEQDGDG-VTVTLSFDGETLDADLLVGADGANSAV 164 (387)
T ss_pred HHHHHHHHHHhhCCCcEEEcCceEEEEEEcCCc-eEEEEcCCCcEEecCEEEECCCCchHH
Confidence 46777888887776 999999999999998877 568888 99999999999999987643
|
|
| >PLN02661 Putative thiazole synthesis | Back alignment and domain information |
|---|
Probab=98.69 E-value=5.7e-07 Score=89.42 Aligned_cols=113 Identities=16% Similarity=0.190 Sum_probs=65.1
Q ss_pred HHHHHhcCcEEEcCcccEEEEEcCCceEEEEEC------C--C------eEEEeeEEEEecCcCCCCCCCC---ccccCe
Q 008860 293 AEQMSLRGIEFHTEESPQAILKSTDGSLSVKTN------K--G------TVDGFSHVMFATGRRPNTKNLG---LEKVGV 355 (551)
Q Consensus 293 ~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~------~--G------~~i~~d~vi~a~G~~p~~~~l~---l~~~gl 355 (551)
.+.+++.|++++.++.+.++..+++.+..|.+. + + ..+.++.||+|||..+...-.. +...++
T Consensus 180 ~ka~~~~gVkI~~~t~V~DLI~~~grVaGVVvnw~~v~~~~~~~s~~dp~~I~AkaVVlATGh~g~~ga~~~~~~~~~g~ 259 (357)
T PLN02661 180 SKLLARPNVKLFNAVAAEDLIVKGDRVGGVVTNWALVAQNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGM 259 (357)
T ss_pred HHHHhcCCCEEEeCeEeeeEEecCCEEEEEEeecchhhhccCCCCccceeEEECCEEEEcCCCCCcchhhhhhcccccCC
Confidence 334556799999999999998776654455431 1 1 2589999999999765321110 111222
Q ss_pred ee--cCCCCeEeCC-------CCCCCCCcEEEeCcCCCC----C--CChHHH-HHhHHHHHHHHcC
Q 008860 356 KM--TKNGAIEVDE-------YSGTAVPSIWAVGDVTDR----I--NLTPVA-LMEGGALAKTLFQ 405 (551)
Q Consensus 356 ~~--~~~G~i~vd~-------~~~t~~~~vya~GD~~~~----~--~~~~~A-~~~g~~aa~~i~g 405 (551)
.. ..-...+++. +-+--+|++|++|=.+.. | .-...+ ...|+.+|+.++.
T Consensus 260 ~~~~pg~~~~~~~~~e~~~v~~t~ev~pgl~~~gm~~~~~~g~~rmgp~fg~m~~sg~k~a~~~~~ 325 (357)
T PLN02661 260 IDSVPGMKALDMNAAEDAIVRLTREVVPGMIVTGMEVAEIDGSPRMGPTFGAMMISGQKAAHLALK 325 (357)
T ss_pred ccCCCCccccchhhHHHHHHhccCcccCCEEEeccchhhhcCCCccCchhHhHHhhhHHHHHHHHH
Confidence 10 0011222221 112247999999987762 2 112223 4678888888774
|
|
| >COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.68 E-value=2.6e-07 Score=92.55 Aligned_cols=84 Identities=18% Similarity=0.143 Sum_probs=67.0
Q ss_pred HHHhCCCeEEEEe-ecCccCCCCCHHHHHHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCc
Q 008860 263 IFSGLTSEVHVFI-RQKKVLRGFDEDIRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGR 341 (551)
Q Consensus 263 ~l~~~g~~Vtlv~-~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~ 341 (551)
.+...|+...++. +.+++-...-+.+.+.+.+.+++.|++++++++|.+|+..++....|.+.+|+++++|.||+|+|+
T Consensus 149 e~~aa~a~~eil~~~~rHiGTD~l~~vvkni~~~l~~~G~ei~f~t~VeDi~~~~~~~~~v~~~~g~~i~~~~vvlA~Gr 228 (486)
T COG2509 149 EFRAAGAGEEILPIYQRHIGTDILPKVVKNIREYLESLGGEIRFNTEVEDIEIEDNEVLGVKLTKGEEIEADYVVLAPGR 228 (486)
T ss_pred HHHHhCCCceeeeccccccCccchHHHHHHHHHHHHhcCcEEEeeeEEEEEEecCCceEEEEccCCcEEecCEEEEccCc
Confidence 3445566555443 334444446778899999999999999999999999998877667789999999999999999999
Q ss_pred CCCCC
Q 008860 342 RPNTK 346 (551)
Q Consensus 342 ~p~~~ 346 (551)
.....
T Consensus 229 sg~dw 233 (486)
T COG2509 229 SGRDW 233 (486)
T ss_pred chHHH
Confidence 87654
|
|
| >PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=98.68 E-value=6.3e-07 Score=93.53 Aligned_cols=58 Identities=16% Similarity=0.155 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCcCCCC
Q 008860 287 DIRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNT 345 (551)
Q Consensus 287 ~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~~ 345 (551)
.+.+.+.+.+++.|++++.++++++++.++++ +.|.+.+|+++.+|.||.|.|.....
T Consensus 113 ~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~-v~v~~~~g~~~~a~~vVgAdG~~S~v 170 (405)
T PRK05714 113 VVQDALLERLHDSDIGLLANARLEQMRRSGDD-WLLTLADGRQLRAPLVVAADGANSAV 170 (405)
T ss_pred HHHHHHHHHHhcCCCEEEcCCEEEEEEEcCCe-EEEEECCCCEEEeCEEEEecCCCchh
Confidence 34566777778889999999999999887766 77888899889999999999997754
|
|
| >PRK09126 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.68 E-value=3.6e-07 Score=94.91 Aligned_cols=56 Identities=25% Similarity=0.222 Sum_probs=44.8
Q ss_pred HHHHHHHH-HhcCcEEEcCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCcCCCC
Q 008860 289 RDFVAEQM-SLRGIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNT 345 (551)
Q Consensus 289 ~~~l~~~l-~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~~ 345 (551)
.+.+.+.+ +..|++++.+++|++++.++++ +.|.+.+|+++.+|.||.|.|..+..
T Consensus 113 ~~~l~~~~~~~~g~~i~~~~~v~~~~~~~~~-~~v~~~~g~~~~a~~vI~AdG~~S~v 169 (392)
T PRK09126 113 RRAAYEAVSQQDGIELLTGTRVTAVRTDDDG-AQVTLANGRRLTARLLVAADSRFSAT 169 (392)
T ss_pred HHHHHHHHhhCCCcEEEcCCeEEEEEEcCCe-EEEEEcCCCEEEeCEEEEeCCCCchh
Confidence 33444444 4569999999999999876665 67888899899999999999998765
|
|
| >PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways | Back alignment and domain information |
|---|
Probab=98.67 E-value=7e-07 Score=91.07 Aligned_cols=58 Identities=19% Similarity=0.275 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEE--C-CCe--EEEeeEEEEecCcCCCC
Q 008860 287 DIRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKT--N-KGT--VDGFSHVMFATGRRPNT 345 (551)
Q Consensus 287 ~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~--~-~G~--~i~~d~vi~a~G~~p~~ 345 (551)
.+.+.+.+.+++.|++++++++++.++.+.++ +.+.+ . +|+ ++++|.||-|-|.+...
T Consensus 112 ~l~~~L~~~~~~~gv~i~~~~~v~~~~~d~~~-~~~~~~~~~~g~~~~i~adlvVgADG~~S~v 174 (356)
T PF01494_consen 112 ELDRALREEAEERGVDIRFGTRVVSIEQDDDG-VTVVVRDGEDGEEETIEADLVVGADGAHSKV 174 (356)
T ss_dssp HHHHHHHHHHHHHTEEEEESEEEEEEEEETTE-EEEEEEETCTCEEEEEEESEEEE-SGTT-HH
T ss_pred HHHHhhhhhhhhhhhhheeeeecccccccccc-cccccccccCCceeEEEEeeeecccCcccch
Confidence 45677888889999999999999999888776 44333 2 343 68999999999998754
|
In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C .... |
| >PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional | Back alignment and domain information |
|---|
Probab=98.67 E-value=2.6e-07 Score=95.85 Aligned_cols=57 Identities=14% Similarity=0.127 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHhcC-cEEEcCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCcCCCC
Q 008860 287 DIRDFVAEQMSLRG-IEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNT 345 (551)
Q Consensus 287 ~~~~~l~~~l~~~G-v~i~~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~~ 345 (551)
.+.+.+.+.+++.| ++++ +++++++..++++ +.|++.+|+++.+|.||.|.|.....
T Consensus 112 ~l~~~L~~~~~~~~~v~~~-~~~v~~i~~~~~~-~~v~~~~g~~~~a~~vI~adG~~S~v 169 (388)
T PRK07608 112 LIERALWAALRFQPNLTWF-PARAQGLEVDPDA-ATLTLADGQVLRADLVVGADGAHSWV 169 (388)
T ss_pred HHHHHHHHHHHhCCCcEEE-cceeEEEEecCCe-EEEEECCCCEEEeeEEEEeCCCCchH
Confidence 45667777777877 9999 8899999876665 77888888889999999999997653
|
|
| >PRK06481 fumarate reductase flavoprotein subunit; Validated | Back alignment and domain information |
|---|
Probab=98.66 E-value=1.1e-06 Score=94.19 Aligned_cols=62 Identities=18% Similarity=0.119 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEE--CCCe--EEEeeEEEEecC-cCCCCCC
Q 008860 286 EDIRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKT--NKGT--VDGFSHVMFATG-RRPNTKN 347 (551)
Q Consensus 286 ~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~--~~G~--~i~~d~vi~a~G-~~p~~~~ 347 (551)
..+.+.+.+.+++.|+++++++.++++..+++.+..|.. .+++ ++.++.||+|+| +.+|.++
T Consensus 190 ~~l~~~L~~~~~~~gv~i~~~t~v~~l~~~~g~V~Gv~~~~~~g~~~~i~a~~VVlAtGG~~~n~~m 256 (506)
T PRK06481 190 GYLVDGLLKNVQERKIPLFVNADVTKITEKDGKVTGVKVKINGKETKTISSKAVVVTTGGFGANKDM 256 (506)
T ss_pred HHHHHHHHHHHHHcCCeEEeCCeeEEEEecCCEEEEEEEEeCCCeEEEEecCeEEEeCCCcccCHHH
Confidence 345667778888999999999999999876554334443 4443 588999999998 5666554
|
|
| >PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=98.66 E-value=1.3e-06 Score=91.49 Aligned_cols=57 Identities=16% Similarity=0.130 Sum_probs=43.6
Q ss_pred HHHHHHHHHHhc-CcEEEcCcccEEEEEcCCceEEEEECC-C--eEEEeeEEEEecCcCCCC
Q 008860 288 IRDFVAEQMSLR-GIEFHTEESPQAILKSTDGSLSVKTNK-G--TVDGFSHVMFATGRRPNT 345 (551)
Q Consensus 288 ~~~~l~~~l~~~-Gv~i~~~~~v~~i~~~~~~~~~V~~~~-G--~~i~~d~vi~a~G~~p~~ 345 (551)
+.+.+.+.+.+. |+++++++++++++.++++ +.|++.+ + .++.+|.||.|.|.....
T Consensus 123 l~~~L~~~~~~~~~v~i~~~~~v~~v~~~~~~-~~v~~~~~~~~~~i~adlvIgADG~~S~v 183 (415)
T PRK07364 123 LLEALQEFLQSCPNITWLCPAEVVSVEYQQDA-ATVTLEIEGKQQTLQSKLVVAADGARSPI 183 (415)
T ss_pred HHHHHHHHHhcCCCcEEEcCCeeEEEEecCCe-eEEEEccCCcceEEeeeEEEEeCCCCchh
Confidence 455666666654 7999999999999877665 6677653 2 369999999999987754
|
|
| >TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form | Back alignment and domain information |
|---|
Probab=98.65 E-value=5.9e-07 Score=93.78 Aligned_cols=57 Identities=16% Similarity=0.196 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHhcCcEEEcCcccEEEEEc-CCceEEEEECCCeEEEeeEEEEecCcCC
Q 008860 286 EDIRDFVAEQMSLRGIEFHTEESPQAILKS-TDGSLSVKTNKGTVDGFSHVMFATGRRP 343 (551)
Q Consensus 286 ~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~-~~~~~~V~~~~G~~i~~d~vi~a~G~~p 343 (551)
..+...+.+.+++.|++++.+++|++++.. ++....|.+.+| .+.++.||+|+|...
T Consensus 183 ~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~~~v~t~~g-~i~a~~vVvaagg~~ 240 (407)
T TIGR01373 183 DAVAWGYARGADRRGVDIIQNCEVTGFIRRDGGRVIGVETTRG-FIGAKKVGVAVAGHS 240 (407)
T ss_pred HHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCCcEEEEEeCCc-eEECCEEEECCChhh
Confidence 345566778889999999999999999764 344355778887 499999988877654
|
Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms. |
| >PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed | Back alignment and domain information |
|---|
Probab=98.65 E-value=6.8e-07 Score=92.80 Aligned_cols=57 Identities=16% Similarity=0.191 Sum_probs=46.8
Q ss_pred HHHHHHHHHHhc-CcEEEcCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCcCCCC
Q 008860 288 IRDFVAEQMSLR-GIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNT 345 (551)
Q Consensus 288 ~~~~l~~~l~~~-Gv~i~~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~~ 345 (551)
+.+.+.+.+++. |++++.+++++++..++++ +.|.+.+|+++.+|.||.|.|.....
T Consensus 114 l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~-~~v~~~~g~~~~a~~vI~AdG~~S~v 171 (391)
T PRK08020 114 LQLALWQALEAHPNVTLRCPASLQALQRDDDG-WELTLADGEEIQAKLVIGADGANSQV 171 (391)
T ss_pred HHHHHHHHHHcCCCcEEEcCCeeEEEEEcCCe-EEEEECCCCEEEeCEEEEeCCCCchh
Confidence 455666666666 9999999999999877665 77888888889999999999998754
|
|
| >TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364 | Back alignment and domain information |
|---|
Probab=98.65 E-value=1.3e-06 Score=89.72 Aligned_cols=54 Identities=19% Similarity=0.310 Sum_probs=42.1
Q ss_pred CHHHHHHHHHHHHhc-CcEEEcCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCcCCC
Q 008860 285 DEDIRDFVAEQMSLR-GIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPN 344 (551)
Q Consensus 285 ~~~~~~~l~~~l~~~-Gv~i~~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~ 344 (551)
+..+...+.+.+.+. |++++.+++|.+++.. .|.+.+|+ +.+|.||+|+|...+
T Consensus 144 p~~~~~~l~~~~~~~~Gv~i~~~t~V~~i~~~-----~v~t~~g~-i~a~~VV~A~G~~s~ 198 (365)
T TIGR03364 144 PREAIPALAAYLAEQHGVEFHWNTAVTSVETG-----TVRTSRGD-VHADQVFVCPGADFE 198 (365)
T ss_pred HHHHHHHHHHHHHhcCCCEEEeCCeEEEEecC-----eEEeCCCc-EEeCEEEECCCCChh
Confidence 345666777777765 9999999999999642 47777775 789999999998654
|
This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases. |
| >PRK07588 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.64 E-value=3.7e-07 Score=94.78 Aligned_cols=57 Identities=21% Similarity=0.296 Sum_probs=45.5
Q ss_pred HHHHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCcCCCCC
Q 008860 288 IRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNTK 346 (551)
Q Consensus 288 ~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~~~ 346 (551)
+.+.+.+.+. .|++++++++|++++.++++ +.|++++|+++++|.||-|-|.++..-
T Consensus 105 l~~~L~~~~~-~~v~i~~~~~v~~i~~~~~~-v~v~~~~g~~~~~d~vIgADG~~S~vR 161 (391)
T PRK07588 105 LAAAIYTAID-GQVETIFDDSIATIDEHRDG-VRVTFERGTPRDFDLVIGADGLHSHVR 161 (391)
T ss_pred HHHHHHHhhh-cCeEEEeCCEEeEEEECCCe-EEEEECCCCEEEeCEEEECCCCCccch
Confidence 3444444443 47999999999999887766 778899999899999999999877653
|
|
| >PRK08013 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=98.64 E-value=7.5e-07 Score=92.74 Aligned_cols=58 Identities=12% Similarity=0.017 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHhc-CcEEEcCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCcCCCC
Q 008860 287 DIRDFVAEQMSLR-GIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNT 345 (551)
Q Consensus 287 ~~~~~l~~~l~~~-Gv~i~~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~~ 345 (551)
.+.+.+.+.+++. |++++.++++++++.++++ +.+++.+|+++.+|.||-|-|.+...
T Consensus 112 ~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~-v~v~~~~g~~i~a~lvVgADG~~S~v 170 (400)
T PRK08013 112 VIHYALWQKAQQSSDITLLAPAELQQVAWGENE-AFLTLKDGSMLTARLVVGADGANSWL 170 (400)
T ss_pred HHHHHHHHHHhcCCCcEEEcCCeeEEEEecCCe-EEEEEcCCCEEEeeEEEEeCCCCcHH
Confidence 3455666666664 8999999999999887766 77888899999999999999988755
|
|
| >TIGR02028 ChlP geranylgeranyl reductase | Back alignment and domain information |
|---|
Probab=98.64 E-value=1e-07 Score=98.91 Aligned_cols=31 Identities=23% Similarity=0.359 Sum_probs=29.7
Q ss_pred ccEEEECCChHHHHHHHHHHhCCCcEEEEcc
Q 008860 73 FDLFTIGAGSGGVRASRFAANFGASVAICEL 103 (551)
Q Consensus 73 ~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~ 103 (551)
+||+||||||||++||+.|++.|++|+|+|+
T Consensus 1 ~~VvIVGaGPAG~~aA~~la~~G~~V~llE~ 31 (398)
T TIGR02028 1 LRVAVVGGGPAGASAAETLASAGIQTFLLER 31 (398)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCcEEEEec
Confidence 5899999999999999999999999999994
|
This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll. |
| >PRK13977 myosin-cross-reactive antigen; Provisional | Back alignment and domain information |
|---|
Probab=98.64 E-value=5.3e-07 Score=95.07 Aligned_cols=92 Identities=12% Similarity=0.096 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHhCCCeEEEEeecCccC---CCCCHHHHHHHHHHHHhcCcEEEcCcccEEEEEc-CC--c-eEEEEEC-C
Q 008860 255 YIALEFAGIFSGLTSEVHVFIRQKKVL---RGFDEDIRDFVAEQMSLRGIEFHTEESPQAILKS-TD--G-SLSVKTN-K 326 (551)
Q Consensus 255 ~~g~e~a~~l~~~g~~Vtlv~~~~~~l---~~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~-~~--~-~~~V~~~-~ 326 (551)
.++.|+..++.++=.++.-+.....+. ..-.+.+...+.+.|+++||+|+++++|++|..+ ++ + +..|... +
T Consensus 192 hSA~E~rry~~rf~~~~~~l~~~s~l~ft~ynqyeSLV~PL~~~Le~~GV~f~~~t~VtdL~~~~d~~~~~VtgI~~~~~ 271 (576)
T PRK13977 192 HSALEMRRYMHRFIHHIGGLPDLSGLKFTKYNQYESLVLPLIKYLEDHGVDFQYGTKVTDIDFDITGGKKTATAIHLTRN 271 (576)
T ss_pred hHHHHHHHHHHHHHHhhccCCccccccCCCCCchhHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCCceEEEEEEEEeC
Confidence 478899988877622221111111111 1123677888999999999999999999999875 22 2 3445553 2
Q ss_pred Ce-----EEEeeEEEEecCcCCCCC
Q 008860 327 GT-----VDGFSHVMFATGRRPNTK 346 (551)
Q Consensus 327 G~-----~i~~d~vi~a~G~~p~~~ 346 (551)
|+ ..+.|.||+++|.-....
T Consensus 272 ~~~~~I~l~~~DlVivTnGs~t~ns 296 (576)
T PRK13977 272 GKEETIDLTEDDLVFVTNGSITESS 296 (576)
T ss_pred CceeEEEecCCCEEEEeCCcCcccc
Confidence 32 246899999999755443
|
|
| >COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.63 E-value=1e-06 Score=94.15 Aligned_cols=49 Identities=33% Similarity=0.460 Sum_probs=37.4
Q ss_pred CCccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCee
Q 008860 71 YDFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTC 120 (551)
Q Consensus 71 ~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~ 120 (551)
.++||||||||.|||.||..+++.|.+|+|+||-+.. ........||.+
T Consensus 5 ~~~DvvVIG~G~AGl~AAi~aa~~g~~V~l~~K~~~~-rg~t~~a~gG~~ 53 (562)
T COG1053 5 HEFDVVVIGGGGAGLRAAIEAAEAGLKVALLSKAPPK-RGHTVAAQGGIN 53 (562)
T ss_pred ccCCEEEECCcHHHHHHHHHHHhcCCcEEEEEccccC-CCchhhhccccc
Confidence 4699999999999999999999999999999953332 122233445554
|
|
| >PRK12839 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.63 E-value=1.2e-06 Score=94.78 Aligned_cols=56 Identities=30% Similarity=0.477 Sum_probs=45.5
Q ss_pred CCCCccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCeeccCC---CcchHHHHH
Q 008860 69 SHYDFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRG---CVPKKLLVY 133 (551)
Q Consensus 69 ~~~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~~~~g---~~p~~~l~~ 133 (551)
+..++||+|||+|.+|++||+.+++.|.+|+|||| ....||++...+ |+|.+.+..
T Consensus 5 ~~~~~dv~ViG~G~aG~~aa~~~~~~g~~v~~iek---------~~~~gg~~~~~~g~~~~~~~~~~~ 63 (572)
T PRK12839 5 MTHTYDVVVVGSGAGGLSAAVAAAYGGAKVLVVEK---------ASTCGGATAWSGGWMWTPGNSLAR 63 (572)
T ss_pred cCCcCCEEEECcCHHHHHHHHHHHHCCCcEEEEec---------CCCCCccccccCCeeecCCchhhh
Confidence 34579999999999999999999999999999994 446788887665 567655433
|
|
| >PRK10015 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=98.63 E-value=3.2e-07 Score=96.09 Aligned_cols=57 Identities=16% Similarity=0.225 Sum_probs=42.1
Q ss_pred HHHHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCcCCCC
Q 008860 288 IRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNT 345 (551)
Q Consensus 288 ~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~~ 345 (551)
+-+.+.+.+++.|++++.+++|+++..++++...+.. ++.++.+|.||.|.|.....
T Consensus 110 fd~~L~~~a~~~Gv~i~~~~~V~~i~~~~~~v~~v~~-~~~~i~A~~VI~AdG~~s~v 166 (429)
T PRK10015 110 LDPWLMEQAEQAGAQFIPGVRVDALVREGNKVTGVQA-GDDILEANVVILADGVNSML 166 (429)
T ss_pred HHHHHHHHHHHcCCEEECCcEEEEEEEeCCEEEEEEe-CCeEEECCEEEEccCcchhh
Confidence 3445666777889999999999998876555233443 44579999999999986543
|
|
| >PRK06834 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.62 E-value=8.4e-07 Score=94.41 Aligned_cols=58 Identities=16% Similarity=0.190 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCcCCCC
Q 008860 287 DIRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNT 345 (551)
Q Consensus 287 ~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~~ 345 (551)
.+.+.+.+.+++.|+++++++++++++.++++ +.+++.+|+++.+|.||.|.|.++..
T Consensus 101 ~le~~L~~~l~~~gv~i~~~~~v~~v~~~~~~-v~v~~~~g~~i~a~~vVgADG~~S~v 158 (488)
T PRK06834 101 HIERILAEWVGELGVPIYRGREVTGFAQDDTG-VDVELSDGRTLRAQYLVGCDGGRSLV 158 (488)
T ss_pred HHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCe-EEEEECCCCEEEeCEEEEecCCCCCc
Confidence 45667778888889999999999999987776 77888888889999999999998854
|
|
| >PRK06184 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.62 E-value=1e-06 Score=94.57 Aligned_cols=57 Identities=12% Similarity=0.104 Sum_probs=46.6
Q ss_pred HHHHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEE---CCCeEEEeeEEEEecCcCCCC
Q 008860 288 IRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKT---NKGTVDGFSHVMFATGRRPNT 345 (551)
Q Consensus 288 ~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~---~~G~~i~~d~vi~a~G~~p~~ 345 (551)
+.+.+.+.+++.|+++++++++++++.++++ +.+.+ .+++++.+|.||.|.|.+...
T Consensus 111 le~~L~~~l~~~gv~i~~~~~v~~i~~~~~~-v~v~~~~~~~~~~i~a~~vVgADG~~S~v 170 (502)
T PRK06184 111 TERILRERLAELGHRVEFGCELVGFEQDADG-VTARVAGPAGEETVRARYLVGADGGRSFV 170 (502)
T ss_pred HHHHHHHHHHHCCCEEEeCcEEEEEEEcCCc-EEEEEEeCCCeEEEEeCEEEECCCCchHH
Confidence 4566777788889999999999999887776 66666 566789999999999988643
|
|
| >PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=98.62 E-value=4.1e-07 Score=94.83 Aligned_cols=58 Identities=17% Similarity=0.254 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCcCCCC
Q 008860 287 DIRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNT 345 (551)
Q Consensus 287 ~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~~ 345 (551)
.+.+.+.+.+++.|++++.+++|++++.++++ +.|++.+|+++.+|.||.|.|..+..
T Consensus 112 ~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~-v~v~~~~g~~~~ad~vI~AdG~~S~v 169 (403)
T PRK07333 112 VLINALRKRAEALGIDLREATSVTDFETRDEG-VTVTLSDGSVLEARLLVAADGARSKL 169 (403)
T ss_pred HHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCE-EEEEECCCCEEEeCEEEEcCCCChHH
Confidence 56677788888889999999999999877665 77888899889999999999987754
|
|
| >PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=98.62 E-value=6.8e-07 Score=92.55 Aligned_cols=56 Identities=16% Similarity=0.096 Sum_probs=45.8
Q ss_pred HHHHHHHHHh-cCcEEEcCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCcCCCC
Q 008860 289 RDFVAEQMSL-RGIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNT 345 (551)
Q Consensus 289 ~~~l~~~l~~-~Gv~i~~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~~ 345 (551)
...+.+.+++ .|++++.++++++++.++++ +.|++.+|+++.+|.||.|.|..+..
T Consensus 113 ~~~L~~~~~~~~~i~i~~~~~v~~~~~~~~~-~~v~~~~g~~~~~~lvIgADG~~S~v 169 (384)
T PRK08849 113 QLGLWQQFAQYPNLTLMCPEKLADLEFSAEG-NRVTLESGAEIEAKWVIGADGANSQV 169 (384)
T ss_pred HHHHHHHHHhCCCeEEECCCceeEEEEcCCe-EEEEECCCCEEEeeEEEEecCCCchh
Confidence 3444454444 47999999999999887776 77899999999999999999998865
|
|
| >PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed | Back alignment and domain information |
|---|
Probab=98.60 E-value=6.6e-07 Score=99.16 Aligned_cols=58 Identities=14% Similarity=0.215 Sum_probs=48.4
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCcCCC
Q 008860 285 DEDIRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPN 344 (551)
Q Consensus 285 ~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~ 344 (551)
+..+...+.+.+++ |++++.+++|+++..++++ +.|.+.+|..+.+|.||+|+|....
T Consensus 407 p~~l~~aL~~~a~~-Gv~i~~~~~V~~i~~~~~~-~~v~t~~g~~~~ad~VV~A~G~~s~ 464 (662)
T PRK01747 407 PAELCRALLALAGQ-QLTIHFGHEVARLEREDDG-WQLDFAGGTLASAPVVVLANGHDAA 464 (662)
T ss_pred HHHHHHHHHHhccc-CcEEEeCCEeeEEEEeCCE-EEEEECCCcEEECCEEEECCCCCcc
Confidence 45677788888888 9999999999999876665 6688888877889999999998754
|
|
| >PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=98.59 E-value=1.3e-06 Score=91.09 Aligned_cols=57 Identities=16% Similarity=0.061 Sum_probs=45.7
Q ss_pred HHHHHHHHHHh-cCcEEEcCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCcCCCC
Q 008860 288 IRDFVAEQMSL-RGIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNT 345 (551)
Q Consensus 288 ~~~~l~~~l~~-~Gv~i~~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~~ 345 (551)
+.+.+.+.+.+ .|++++.+++|++++.++++ +.|.+.+|+++.+|.||.|.|.....
T Consensus 113 l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~-~~v~~~~g~~~~a~lvIgADG~~S~v 170 (405)
T PRK08850 113 IQLALLEQVQKQDNVTLLMPARCQSIAVGESE-AWLTLDNGQALTAKLVVGADGANSWL 170 (405)
T ss_pred HHHHHHHHHhcCCCeEEEcCCeeEEEEeeCCe-EEEEECCCCEEEeCEEEEeCCCCChh
Confidence 34455555555 47999999999999877666 77889999999999999999987654
|
|
| >PRK07121 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=98.59 E-value=2.1e-06 Score=91.89 Aligned_cols=60 Identities=15% Similarity=0.211 Sum_probs=44.9
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCcccEEEEEcCC-ceEEEEEC-CCe--EEEe-eEEEEecCcCCC
Q 008860 285 DEDIRDFVAEQMSLRGIEFHTEESPQAILKSTD-GSLSVKTN-KGT--VDGF-SHVMFATGRRPN 344 (551)
Q Consensus 285 ~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~-~~~~V~~~-~G~--~i~~-d~vi~a~G~~p~ 344 (551)
...+.+.+.+.+++.|++++++++++++..+++ .+..|... +++ .+.+ +.||+|+|-...
T Consensus 176 g~~~~~~L~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~~~~~i~a~k~VVlAtGg~~~ 240 (492)
T PRK07121 176 GAMLMDPLAKRAAALGVQIRYDTRATRLIVDDDGRVVGVEARRYGETVAIRARKGVVLAAGGFAM 240 (492)
T ss_pred hHHHHHHHHHHHHhCCCEEEeCCEEEEEEECCCCCEEEEEEEeCCcEEEEEeCCEEEECCCCcCc
Confidence 345677788888999999999999999987643 44455543 332 4778 999999997553
|
|
| >PRK06175 L-aspartate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=98.59 E-value=2.6e-06 Score=89.30 Aligned_cols=58 Identities=9% Similarity=0.090 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHh-cCcEEEcCcccEEEEEcCCceEEEE-ECCCe--EEEeeEEEEecCcCC
Q 008860 286 EDIRDFVAEQMSL-RGIEFHTEESPQAILKSTDGSLSVK-TNKGT--VDGFSHVMFATGRRP 343 (551)
Q Consensus 286 ~~~~~~l~~~l~~-~Gv~i~~~~~v~~i~~~~~~~~~V~-~~~G~--~i~~d~vi~a~G~~p 343 (551)
..+.+.+.+.+++ .||++++++.++++..+++.++.|. ..+++ .+.++.||+|+|-..
T Consensus 128 ~~l~~~L~~~~~~~~gV~i~~~t~v~~Li~~~~~v~Gv~~~~~g~~~~i~Ak~VILAtGG~~ 189 (433)
T PRK06175 128 KKVEKILLKKVKKRKNITIIENCYLVDIIENDNTCIGAICLKDNKQINIYSKVTILATGGIG 189 (433)
T ss_pred HHHHHHHHHHHHhcCCCEEEECcEeeeeEecCCEEEEEEEEECCcEEEEEcCeEEEccCccc
Confidence 3556667766664 5999999999999877655544443 33444 588999999999744
|
|
| >PLN02463 lycopene beta cyclase | Back alignment and domain information |
|---|
Probab=98.59 E-value=5.3e-07 Score=94.30 Aligned_cols=32 Identities=25% Similarity=0.434 Sum_probs=30.6
Q ss_pred CCccEEEECCChHHHHHHHHHHhCCCcEEEEc
Q 008860 71 YDFDLFTIGAGSGGVRASRFAANFGASVAICE 102 (551)
Q Consensus 71 ~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE 102 (551)
..|||+||||||||+++|..|++.|++|+|||
T Consensus 27 ~~~DVvIVGaGpAGLalA~~La~~Gl~V~liE 58 (447)
T PLN02463 27 RVVDLVVVGGGPAGLAVAQQVSEAGLSVCCID 58 (447)
T ss_pred cCceEEEECCCHHHHHHHHHHHHCCCeEEEec
Confidence 35899999999999999999999999999999
|
|
| >TIGR02032 GG-red-SF geranylgeranyl reductase family | Back alignment and domain information |
|---|
Probab=98.58 E-value=2e-07 Score=92.61 Aligned_cols=31 Identities=32% Similarity=0.502 Sum_probs=29.9
Q ss_pred ccEEEECCChHHHHHHHHHHhCCCcEEEEcc
Q 008860 73 FDLFTIGAGSGGVRASRFAANFGASVAICEL 103 (551)
Q Consensus 73 ~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~ 103 (551)
|||+|||||++|+++|+.|++.|.+|+|||+
T Consensus 1 ~dv~IiGaG~aGl~~A~~l~~~g~~v~vie~ 31 (295)
T TIGR02032 1 YDVVVVGAGPAGASAAYRLADKGLRVLLLEK 31 (295)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEec
Confidence 6999999999999999999999999999993
|
This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates. |
| >PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=98.57 E-value=3.7e-07 Score=94.67 Aligned_cols=57 Identities=16% Similarity=0.174 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHhc-CcEEEcCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCcCCCC
Q 008860 287 DIRDFVAEQMSLR-GIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNT 345 (551)
Q Consensus 287 ~~~~~l~~~l~~~-Gv~i~~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~~ 345 (551)
.+.+.+.+.+.+. ++. +++++|++++.++++ +.|++++|+++.+|.||.|.|..+..
T Consensus 112 ~l~~~L~~~~~~~~~~~-~~~~~v~~i~~~~~~-~~v~~~~g~~~~a~~vI~AdG~~S~v 169 (388)
T PRK07494 112 LLNRALEARVAELPNIT-RFGDEAESVRPREDE-VTVTLADGTTLSARLVVGADGRNSPV 169 (388)
T ss_pred HHHHHHHHHHhcCCCcE-EECCeeEEEEEcCCe-EEEEECCCCEEEEeEEEEecCCCchh
Confidence 3556666767666 455 789999999877766 77888889899999999999997643
|
|
| >TIGR02734 crtI_fam phytoene desaturase | Back alignment and domain information |
|---|
Probab=98.56 E-value=1e-06 Score=94.64 Aligned_cols=58 Identities=12% Similarity=-0.003 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCcCC
Q 008860 286 EDIRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRP 343 (551)
Q Consensus 286 ~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p 343 (551)
..+.+.+.+.+++.|+++++++.|++|..++++.+.|++.+|+++.+|.||++++...
T Consensus 219 ~~l~~al~~~~~~~G~~i~~~~~V~~i~~~~~~~~~V~~~~g~~~~ad~VI~a~~~~~ 276 (502)
T TIGR02734 219 GALVAAMAKLAEDLGGELRLNAEVIRIETEGGRATAVHLADGERLDADAVVSNADLHH 276 (502)
T ss_pred HHHHHHHHHHHHHCCCEEEECCeEEEEEeeCCEEEEEEECCCCEEECCEEEECCcHHH
Confidence 5678889999999999999999999998776655678899998899999999987643
|
Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis. |
| >PRK13369 glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.56 E-value=1.1e-06 Score=94.04 Aligned_cols=59 Identities=15% Similarity=0.056 Sum_probs=46.0
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEECCC----eEEEeeEEEEecCcCCC
Q 008860 285 DEDIRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTNKG----TVDGFSHVMFATGRRPN 344 (551)
Q Consensus 285 ~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~G----~~i~~d~vi~a~G~~p~ 344 (551)
+..+...+.+..+++|++++.+++|+++..+++. +.|.+.++ .++.++.||.|+|.+..
T Consensus 154 ~~rl~~~l~~~a~~~Ga~i~~~~~V~~i~~~~~~-~~v~~~~~~g~~~~i~a~~VVnAaG~wa~ 216 (502)
T PRK13369 154 DARLVVLNALDAAERGATILTRTRCVSARREGGL-WRVETRDADGETRTVRARALVNAAGPWVT 216 (502)
T ss_pred HHHHHHHHHHHHHHCCCEEecCcEEEEEEEcCCE-EEEEEEeCCCCEEEEEecEEEECCCccHH
Confidence 4556667777788999999999999999876554 56666554 35899999999998653
|
|
| >PRK07190 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.55 E-value=7.1e-07 Score=94.88 Aligned_cols=57 Identities=16% Similarity=0.155 Sum_probs=47.6
Q ss_pred HHHHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCcCCCC
Q 008860 288 IRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNT 345 (551)
Q Consensus 288 ~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~~ 345 (551)
+...+.+.+++.|++++.+++|++++.++++ +.+.+.+|+++.|+.||.|.|.+...
T Consensus 111 le~~L~~~~~~~Gv~v~~~~~v~~l~~~~~~-v~v~~~~g~~v~a~~vVgADG~~S~v 167 (487)
T PRK07190 111 VEKLLDDKLKEAGAAVKRNTSVVNIELNQAG-CLTTLSNGERIQSRYVIGADGSRSFV 167 (487)
T ss_pred HHHHHHHHHHHCCCEEEeCCEEEEEEEcCCe-eEEEECCCcEEEeCEEEECCCCCHHH
Confidence 4556677788889999999999999987776 66777888889999999999987643
|
|
| >PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed | Back alignment and domain information |
|---|
Probab=98.55 E-value=1.6e-06 Score=88.53 Aligned_cols=31 Identities=32% Similarity=0.326 Sum_probs=29.8
Q ss_pred CccEEEECCChHHHHHHHHHHhCCCcEEEEc
Q 008860 72 DFDLFTIGAGSGGVRASRFAANFGASVAICE 102 (551)
Q Consensus 72 ~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE 102 (551)
+.||+|||||++|+.+|+.|++.|++|+|+|
T Consensus 2 ~~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE 32 (436)
T PRK05335 2 MKPVNVIGAGLAGSEAAWQLAKRGVPVELYE 32 (436)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCcEEEEE
Confidence 3689999999999999999999999999999
|
|
| >PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=98.55 E-value=2.1e-06 Score=94.12 Aligned_cols=55 Identities=15% Similarity=0.178 Sum_probs=41.4
Q ss_pred HHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEEC---CCe--EEEeeEEEEecCcCCC
Q 008860 290 DFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTN---KGT--VDGFSHVMFATGRRPN 344 (551)
Q Consensus 290 ~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~---~G~--~i~~d~vi~a~G~~p~ 344 (551)
+.+.+.+++.||++++++.++++..+++.++.|... +|+ .+.++.||+|||-..+
T Consensus 174 ~~L~~~~~~~gV~i~~~t~v~~Li~d~g~V~GV~~~~~~~g~~~~i~AkaVVLATGG~g~ 233 (640)
T PRK07573 174 QALSRQIAAGTVKMYTRTEMLDLVVVDGRARGIVARNLVTGEIERHTADAVVLATGGYGN 233 (640)
T ss_pred HHHHHHHHhcCCEEEeceEEEEEEEeCCEEEEEEEEECCCCcEEEEECCEEEECCCCccc
Confidence 455666778899999999999998765555555542 454 5789999999997443
|
|
| >TIGR01790 carotene-cycl lycopene cyclase family protein | Back alignment and domain information |
|---|
Probab=98.54 E-value=4.5e-07 Score=94.04 Aligned_cols=30 Identities=33% Similarity=0.402 Sum_probs=28.9
Q ss_pred cEEEECCChHHHHHHHHHHhCCCcEEEEcc
Q 008860 74 DLFTIGAGSGGVRASRFAANFGASVAICEL 103 (551)
Q Consensus 74 dVvIIGgG~aGl~aA~~l~~~G~~V~liE~ 103 (551)
||+|||||+||+++|..|++.|++|+|||+
T Consensus 1 DviIiGaG~AGl~~A~~la~~g~~v~liE~ 30 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELARPGLRVQLIEP 30 (388)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCeEEEEcc
Confidence 799999999999999999999999999993
|
This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene. |
| >TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase | Back alignment and domain information |
|---|
Probab=98.54 E-value=1.5e-06 Score=89.99 Aligned_cols=57 Identities=16% Similarity=0.259 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHh-cCcEEEcCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCcCCC
Q 008860 287 DIRDFVAEQMSL-RGIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPN 344 (551)
Q Consensus 287 ~~~~~l~~~l~~-~Gv~i~~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~ 344 (551)
++.+.+.+.+.+ .|++++.+++|++++.++++ ++|.+.+|+++.+|.||.|.|....
T Consensus 106 ~l~~~L~~~~~~~~gv~~~~~~~v~~i~~~~~~-~~v~~~~g~~~~ad~vV~AdG~~S~ 163 (382)
T TIGR01984 106 DLGQALLSRLALLTNIQLYCPARYKEIIRNQDY-VRVTLDNGQQLRAKLLIAADGANSK 163 (382)
T ss_pred HHHHHHHHHHHhCCCcEEEcCCeEEEEEEcCCe-EEEEECCCCEEEeeEEEEecCCChH
Confidence 456677777777 49999999999999877666 7788888888999999999998754
|
This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype. |
| >TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase | Back alignment and domain information |
|---|
Probab=98.54 E-value=2.8e-06 Score=90.10 Aligned_cols=60 Identities=13% Similarity=0.167 Sum_probs=45.9
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEE---CCC--eEEEeeEEEEecCcCCC
Q 008860 285 DEDIRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKT---NKG--TVDGFSHVMFATGRRPN 344 (551)
Q Consensus 285 ~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~---~~G--~~i~~d~vi~a~G~~p~ 344 (551)
...+...+.+.++++|++++++++|++++.++++.+.+.+ .+| .++.+|.||+|+|....
T Consensus 177 p~~l~~aL~~~a~~~Gv~i~~~t~V~~i~~~~~~~v~v~~~~~~~g~~~~i~A~~VV~AAG~~s~ 241 (483)
T TIGR01320 177 FGALTKQLLGYLVQNGTTIRFGHEVRNLKRQSDGSWTVTVKNTRTGGKRTLNTRFVFVGAGGGAL 241 (483)
T ss_pred HHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCeEEEEEeeccCCceEEEECCEEEECCCcchH
Confidence 4567788888889999999999999999876543244543 334 26899999999998653
|
This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase. |
| >TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family | Back alignment and domain information |
|---|
Probab=98.53 E-value=2.1e-06 Score=88.85 Aligned_cols=58 Identities=9% Similarity=0.092 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHhcC-cEEEcCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCcCCCC
Q 008860 287 DIRDFVAEQMSLRG-IEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNT 345 (551)
Q Consensus 287 ~~~~~l~~~l~~~G-v~i~~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~~ 345 (551)
.+.+.+.+.+.+.| ++++.+++|++++.++++ +.+++.+|+++.+|.||.|.|.....
T Consensus 107 ~l~~~L~~~~~~~~~~~v~~~~~v~~i~~~~~~-~~v~~~~g~~~~~~~vi~adG~~S~v 165 (385)
T TIGR01988 107 VLQQALWERLQEYPNVTLLCPARVVELPRHSDH-VELTLDDGQQLRARLLVGADGANSKV 165 (385)
T ss_pred HHHHHHHHHHHhCCCcEEecCCeEEEEEecCCe-eEEEECCCCEEEeeEEEEeCCCCCHH
Confidence 45666777777777 999999999999877665 77888999889999999999987643
|
This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki |
| >TIGR02730 carot_isom carotene isomerase | Back alignment and domain information |
|---|
Probab=98.53 E-value=7.1e-07 Score=95.49 Aligned_cols=59 Identities=12% Similarity=0.121 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCcCCC
Q 008860 286 EDIRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPN 344 (551)
Q Consensus 286 ~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~ 344 (551)
..+.+.+.+.+++.|++|+++++|++|..++++...|++.+|+++++|.||+++|....
T Consensus 229 ~~l~~~L~~~~~~~G~~i~~~~~V~~I~~~~~~~~gv~~~~g~~~~ad~vV~a~~~~~~ 287 (493)
T TIGR02730 229 GQIAESLVKGLEKHGGQIRYRARVTKIILENGKAVGVKLADGEKIYAKRIVSNATRWDT 287 (493)
T ss_pred HHHHHHHHHHHHHCCCEEEeCCeeeEEEecCCcEEEEEeCCCCEEEcCEEEECCChHHH
Confidence 56788899999999999999999999987766667788989988999999999887543
|
Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization. |
| >PRK07045 putative monooxygenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.52 E-value=1.7e-06 Score=89.75 Aligned_cols=59 Identities=22% Similarity=0.304 Sum_probs=46.8
Q ss_pred HHHHHHHHHHH-hcCcEEEcCcccEEEEEcCCc-eEEEEECCCeEEEeeEEEEecCcCCCC
Q 008860 287 DIRDFVAEQMS-LRGIEFHTEESPQAILKSTDG-SLSVKTNKGTVDGFSHVMFATGRRPNT 345 (551)
Q Consensus 287 ~~~~~l~~~l~-~~Gv~i~~~~~v~~i~~~~~~-~~~V~~~~G~~i~~d~vi~a~G~~p~~ 345 (551)
++.+.+.+.+. ..|+++++++++++++.++++ .+.|++.+|+++.+|.||-|.|.+...
T Consensus 107 ~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~~~~~~vIgADG~~S~v 167 (388)
T PRK07045 107 QLRRLLLAKLDGLPNVRLRFETSIERIERDADGTVTSVTLSDGERVAPTVLVGADGARSMI 167 (388)
T ss_pred HHHHHHHHHHhcCCCeeEEeCCEEEEEEECCCCcEEEEEeCCCCEEECCEEEECCCCChHH
Confidence 34556666664 458999999999999887665 346888899999999999999988754
|
|
| >PLN02697 lycopene epsilon cyclase | Back alignment and domain information |
|---|
Probab=98.52 E-value=7.4e-07 Score=94.75 Aligned_cols=32 Identities=28% Similarity=0.480 Sum_probs=30.7
Q ss_pred CCccEEEECCChHHHHHHHHHHhCCCcEEEEc
Q 008860 71 YDFDLFTIGAGSGGVRASRFAANFGASVAICE 102 (551)
Q Consensus 71 ~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE 102 (551)
..|||+||||||||+++|..|++.|++|+|||
T Consensus 107 ~~~DVvIVGaGPAGLalA~~Lak~Gl~V~LIe 138 (529)
T PLN02697 107 GTLDLVVIGCGPAGLALAAESAKLGLNVGLIG 138 (529)
T ss_pred CcccEEEECcCHHHHHHHHHHHhCCCcEEEec
Confidence 36999999999999999999999999999999
|
|
| >PRK08244 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.51 E-value=1.7e-06 Score=92.61 Aligned_cols=58 Identities=21% Similarity=0.219 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEEC--CC-eEEEeeEEEEecCcCCCC
Q 008860 287 DIRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTN--KG-TVDGFSHVMFATGRRPNT 345 (551)
Q Consensus 287 ~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~--~G-~~i~~d~vi~a~G~~p~~ 345 (551)
.+.+.+.+.+++.|++++.++++++++.++++ +.+.+. +| +++.+|.||.|.|.++..
T Consensus 101 ~le~~L~~~~~~~gv~v~~~~~v~~i~~~~~~-v~v~~~~~~g~~~i~a~~vVgADG~~S~v 161 (493)
T PRK08244 101 ETEKVLEEHARSLGVEIFRGAEVLAVRQDGDG-VEVVVRGPDGLRTLTSSYVVGADGAGSIV 161 (493)
T ss_pred HHHHHHHHHHHHcCCeEEeCCEEEEEEEcCCe-EEEEEEeCCccEEEEeCEEEECCCCChHH
Confidence 45566777788889999999999999877766 555543 56 479999999999998754
|
|
| >PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated | Back alignment and domain information |
|---|
Probab=98.50 E-value=1.3e-06 Score=90.79 Aligned_cols=56 Identities=14% Similarity=0.019 Sum_probs=42.2
Q ss_pred HHHHHHHHHhcCcEEEcCcccEEEEE-cCCceEEEEE-CCCe--EEEeeEEEEecCcCCCC
Q 008860 289 RDFVAEQMSLRGIEFHTEESPQAILK-STDGSLSVKT-NKGT--VDGFSHVMFATGRRPNT 345 (551)
Q Consensus 289 ~~~l~~~l~~~Gv~i~~~~~v~~i~~-~~~~~~~V~~-~~G~--~i~~d~vi~a~G~~p~~ 345 (551)
.+.+.+...+.|+++++++++++++. +++. ..|++ .+|+ ++.+|.||-|-|.+...
T Consensus 106 ~~~Ll~~a~~~gv~v~~~~~v~~i~~~~~~~-~~V~~~~~G~~~~i~ad~vVgADG~~S~v 165 (392)
T PRK08243 106 TRDLMAARLAAGGPIRFEASDVALHDFDSDR-PYVTYEKDGEEHRLDCDFIAGCDGFHGVS 165 (392)
T ss_pred HHHHHHHHHhCCCeEEEeeeEEEEEecCCCc-eEEEEEcCCeEEEEEeCEEEECCCCCCch
Confidence 44555556678999999999999976 4444 55666 4664 68999999999998765
|
|
| >PRK05257 malate:quinone oxidoreductase; Validated | Back alignment and domain information |
|---|
Probab=98.50 E-value=3.6e-06 Score=89.31 Aligned_cols=59 Identities=17% Similarity=0.263 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHhcC-cEEEcCcccEEEEEcCCceEEEEE---CCCe--EEEeeEEEEecCcCCC
Q 008860 286 EDIRDFVAEQMSLRG-IEFHTEESPQAILKSTDGSLSVKT---NKGT--VDGFSHVMFATGRRPN 344 (551)
Q Consensus 286 ~~~~~~l~~~l~~~G-v~i~~~~~v~~i~~~~~~~~~V~~---~~G~--~i~~d~vi~a~G~~p~ 344 (551)
..+.+.+.+.+++.| ++++++++|++++.++++.+.+.+ .+|+ ++.++.||+|+|....
T Consensus 183 ~~l~~aL~~~a~~~Ggv~i~~~teV~~I~~~~dg~~~v~~~~~~~G~~~~i~A~~VVvaAGg~s~ 247 (494)
T PRK05257 183 GALTRQLVGYLQKQGNFELQLGHEVRDIKRNDDGSWTVTVKDLKTGEKRTVRAKFVFIGAGGGAL 247 (494)
T ss_pred HHHHHHHHHHHHhCCCeEEEeCCEEEEEEECCCCCEEEEEEEcCCCceEEEEcCEEEECCCcchH
Confidence 456777888888886 899999999999876554344543 3353 6899999999998753
|
|
| >PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K | Back alignment and domain information |
|---|
Probab=98.50 E-value=1.3e-06 Score=79.84 Aligned_cols=33 Identities=33% Similarity=0.611 Sum_probs=28.1
Q ss_pred CCccEEEECCChHHHHHHHHHHhCCCcEEEEcc
Q 008860 71 YDFDLFTIGAGSGGVRASRFAANFGASVAICEL 103 (551)
Q Consensus 71 ~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~ 103 (551)
.++||+||||||+||+||++|++.|+||++||+
T Consensus 16 ~~~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~ 48 (230)
T PF01946_consen 16 LEYDVAIVGAGPAGLTAAYYLAKAGLKVAVIER 48 (230)
T ss_dssp TEESEEEE--SHHHHHHHHHHHHHTS-EEEEES
T ss_pred ccCCEEEECCChhHHHHHHHHHHCCCeEEEEec
Confidence 368999999999999999999999999999993
|
|
| >PRK05868 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=98.50 E-value=7.6e-07 Score=91.64 Aligned_cols=47 Identities=19% Similarity=0.300 Sum_probs=41.0
Q ss_pred hcCcEEEcCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCcCCCC
Q 008860 298 LRGIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNT 345 (551)
Q Consensus 298 ~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~~ 345 (551)
..|++++++++|++++.++++ +.|++.+|+++++|.||-|-|.+...
T Consensus 116 ~~~v~i~~~~~v~~i~~~~~~-v~v~~~dg~~~~adlvIgADG~~S~v 162 (372)
T PRK05868 116 QPSVEYLFDDSISTLQDDGDS-VRVTFERAAAREFDLVIGADGLHSNV 162 (372)
T ss_pred cCCcEEEeCCEEEEEEecCCe-EEEEECCCCeEEeCEEEECCCCCchH
Confidence 468999999999999876655 78999999999999999999987755
|
|
| >PRK08132 FAD-dependent oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=98.50 E-value=4e-06 Score=90.96 Aligned_cols=58 Identities=14% Similarity=0.265 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHhc-CcEEEcCcccEEEEEcCCceEEEEE--CCCe-EEEeeEEEEecCcCCCC
Q 008860 287 DIRDFVAEQMSLR-GIEFHTEESPQAILKSTDGSLSVKT--NKGT-VDGFSHVMFATGRRPNT 345 (551)
Q Consensus 287 ~~~~~l~~~l~~~-Gv~i~~~~~v~~i~~~~~~~~~V~~--~~G~-~i~~d~vi~a~G~~p~~ 345 (551)
.+.+.+.+.+++. |+++++++++++++.++++ +.+.+ .+|+ ++.+|.||.|.|.++..
T Consensus 126 ~le~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~-v~v~~~~~~g~~~i~ad~vVgADG~~S~v 187 (547)
T PRK08132 126 YVEGYLVERAQALPNIDLRWKNKVTGLEQHDDG-VTLTVETPDGPYTLEADWVIACDGARSPL 187 (547)
T ss_pred HHHHHHHHHHHhCCCcEEEeCCEEEEEEEcCCE-EEEEEECCCCcEEEEeCEEEECCCCCcHH
Confidence 3445566666664 7999999999999887766 44444 4554 69999999999988764
|
|
| >PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional | Back alignment and domain information |
|---|
Probab=98.50 E-value=5.8e-06 Score=89.28 Aligned_cols=60 Identities=13% Similarity=0.062 Sum_probs=45.4
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEEC---CC--eEEEeeEEEEecCcCCC
Q 008860 285 DEDIRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTN---KG--TVDGFSHVMFATGRRPN 344 (551)
Q Consensus 285 ~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~---~G--~~i~~d~vi~a~G~~p~ 344 (551)
+..+...+.+..+++|++++++++|+++..++++...|++. ++ .++.+|.||+|+|.+..
T Consensus 148 p~rl~~al~~~A~~~Ga~i~~~t~V~~i~~~~~~v~gv~v~d~~~g~~~~i~A~~VVnAaG~wa~ 212 (546)
T PRK11101 148 PFRLTAANMLDAKEHGAQILTYHEVTGLIREGDTVCGVRVRDHLTGETQEIHAPVVVNAAGIWGQ 212 (546)
T ss_pred HHHHHHHHHHHHHhCCCEEEeccEEEEEEEcCCeEEEEEEEEcCCCcEEEEECCEEEECCChhHH
Confidence 34556667777889999999999999998776554445542 23 36899999999998653
|
|
| >PRK06185 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.50 E-value=4.8e-06 Score=86.98 Aligned_cols=58 Identities=22% Similarity=0.277 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHh-cCcEEEcCcccEEEEEcCCceEEE--EECCCe-EEEeeEEEEecCcCCC
Q 008860 287 DIRDFVAEQMSL-RGIEFHTEESPQAILKSTDGSLSV--KTNKGT-VDGFSHVMFATGRRPN 344 (551)
Q Consensus 287 ~~~~~l~~~l~~-~Gv~i~~~~~v~~i~~~~~~~~~V--~~~~G~-~i~~d~vi~a~G~~p~ 344 (551)
.+.+.+.+.+++ .|++++.+++++++..+++.+..| ...+|+ ++.+|.||.|.|....
T Consensus 109 ~l~~~L~~~~~~~~~v~i~~~~~v~~~~~~~~~v~~v~~~~~~g~~~i~a~~vI~AdG~~S~ 170 (407)
T PRK06185 109 DFLDFLAEEASAYPNFTLRMGAEVTGLIEEGGRVTGVRARTPDGPGEIRADLVVGADGRHSR 170 (407)
T ss_pred HHHHHHHHHHhhCCCcEEEeCCEEEEEEEeCCEEEEEEEEcCCCcEEEEeCEEEECCCCchH
Confidence 345566666655 489999999999998776653333 445664 7999999999998764
|
|
| >PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=98.49 E-value=2.3e-06 Score=88.99 Aligned_cols=57 Identities=11% Similarity=0.160 Sum_probs=45.4
Q ss_pred HHHHHHHHHHh-cCcEEEcCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCcCCCC
Q 008860 288 IRDFVAEQMSL-RGIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNT 345 (551)
Q Consensus 288 ~~~~l~~~l~~-~Gv~i~~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~~ 345 (551)
+.+.+.+.+.+ .|++++.+++++++..++++ +.|++.+|..+.+|.||.|.|.....
T Consensus 114 l~~~l~~~~~~~~g~~~~~~~~v~~i~~~~~~-~~v~~~~g~~~~a~~vI~AdG~~S~v 171 (395)
T PRK05732 114 VGQRLFALLDKAPGVTLHCPARVANVERTQGS-VRVTLDDGETLTGRLLVAADGSHSAL 171 (395)
T ss_pred HHHHHHHHHhcCCCcEEEcCCEEEEEEEcCCe-EEEEECCCCEEEeCEEEEecCCChhh
Confidence 34555555555 58999999999999876665 77888888889999999999988653
|
|
| >PRK12834 putative FAD-binding dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.48 E-value=4e-06 Score=90.80 Aligned_cols=35 Identities=29% Similarity=0.398 Sum_probs=32.3
Q ss_pred CCCCccEEEECCChHHHHHHHHHHhCCCcEEEEcc
Q 008860 69 SHYDFDLFTIGAGSGGVRASRFAANFGASVAICEL 103 (551)
Q Consensus 69 ~~~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~ 103 (551)
|..++||||||+|.|||+||+.+++.|.+|+||||
T Consensus 1 ~~~~~DVvVVG~G~AGl~AAl~Aa~~G~~VivlEK 35 (549)
T PRK12834 1 MAMDADVIVVGAGLAGLVAAAELADAGKRVLLLDQ 35 (549)
T ss_pred CCccCCEEEECcCHHHHHHHHHHHHCCCeEEEEeC
Confidence 34579999999999999999999999999999994
|
|
| >PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.48 E-value=2.6e-06 Score=91.15 Aligned_cols=59 Identities=17% Similarity=0.125 Sum_probs=45.2
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEECC---Ce--EEEeeEEEEecCcCCC
Q 008860 285 DEDIRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTNK---GT--VDGFSHVMFATGRRPN 344 (551)
Q Consensus 285 ~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~---G~--~i~~d~vi~a~G~~p~ 344 (551)
+..+...+.+..++.|++++.+++|+++..+++. +.|.+.+ |+ ++.++.||.|+|.+..
T Consensus 154 ~~rl~~~l~~~A~~~Ga~i~~~~~V~~i~~~~~~-~~v~~~~~~~g~~~~i~a~~VVnAaG~wa~ 217 (508)
T PRK12266 154 DARLVVLNARDAAERGAEILTRTRVVSARRENGL-WHVTLEDTATGKRYTVRARALVNAAGPWVK 217 (508)
T ss_pred HHHHHHHHHHHHHHcCCEEEcCcEEEEEEEeCCE-EEEEEEEcCCCCEEEEEcCEEEECCCccHH
Confidence 3555566777788899999999999999876544 5565543 43 6899999999998653
|
|
| >PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional | Back alignment and domain information |
|---|
Probab=98.48 E-value=1.1e-05 Score=88.23 Aligned_cols=59 Identities=14% Similarity=0.039 Sum_probs=43.8
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCcccEEEEE-cCCceEEEEE---CCCe--EEEeeEEEEecCcCC
Q 008860 285 DEDIRDFVAEQMSLRGIEFHTEESPQAILK-STDGSLSVKT---NKGT--VDGFSHVMFATGRRP 343 (551)
Q Consensus 285 ~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~-~~~~~~~V~~---~~G~--~i~~d~vi~a~G~~p 343 (551)
...+...+.+.+++.||+++.++.++++.. +++.+..|.. .+|+ .+.++.||+|||-..
T Consensus 165 G~~i~~~L~~~a~~~gv~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~ 229 (617)
T PTZ00139 165 GHAMLHTLYGQSLKYDCNFFIEYFALDLIMDEDGECRGVIAMSMEDGSIHRFRAHYTVIATGGYG 229 (617)
T ss_pred HHHHHHHHHHHHHhCCCEEEeceEEEEEEECCCCEEEEEEEEECCCCeEEEEECCcEEEeCCCCc
Confidence 445677777878889999999999999886 3444444543 4564 578999999998654
|
|
| >PTZ00363 rab-GDP dissociation inhibitor; Provisional | Back alignment and domain information |
|---|
Probab=98.48 E-value=1.4e-06 Score=90.72 Aligned_cols=60 Identities=12% Similarity=0.150 Sum_probs=50.9
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCcccEEEEEcCC-ceEEEEECCCeEEEeeEEEEecCcCCC
Q 008860 285 DEDIRDFVAEQMSLRGIEFHTEESPQAILKSTD-GSLSVKTNKGTVDGFSHVMFATGRRPN 344 (551)
Q Consensus 285 ~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~-~~~~V~~~~G~~i~~d~vi~a~G~~p~ 344 (551)
..++.+.+.+.++..|.+++++++|++|..+++ ..+.|++.+|+++.|+.||......|.
T Consensus 231 ~g~L~qal~r~~a~~Gg~~~L~~~V~~I~~~~~g~~~~V~~~~Ge~i~a~~VV~~~s~~p~ 291 (443)
T PTZ00363 231 LGGLPQAFSRLCAIYGGTYMLNTPVDEVVFDENGKVCGVKSEGGEVAKCKLVICDPSYFPD 291 (443)
T ss_pred HHHHHHHHHHHHHHcCcEEEcCCeEEEEEEcCCCeEEEEEECCCcEEECCEEEECcccccc
Confidence 457888888889999999999999999987654 446789999999999999998777765
|
|
| >COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.47 E-value=1.9e-06 Score=89.28 Aligned_cols=58 Identities=16% Similarity=0.170 Sum_probs=45.9
Q ss_pred CHHHHHHHHHHHHhcC-cEEEcCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCcCCC
Q 008860 285 DEDIRDFVAEQMSLRG-IEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPN 344 (551)
Q Consensus 285 ~~~~~~~l~~~l~~~G-v~i~~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~ 344 (551)
+..+...+.+.+++.| ..+..++.+..++.+. ....|.+.+|+ +.+|.||+|+|....
T Consensus 155 p~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~-~~~~v~t~~g~-i~a~~vv~a~G~~~~ 213 (387)
T COG0665 155 PRLLTRALAAAAEELGVVIIEGGTPVTSLERDG-RVVGVETDGGT-IEADKVVLAAGAWAG 213 (387)
T ss_pred HHHHHHHHHHHHHhcCCeEEEccceEEEEEecC-cEEEEEeCCcc-EEeCEEEEcCchHHH
Confidence 3467788888999999 5566688888888753 44778888887 999999999997643
|
|
| >PRK07233 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.46 E-value=8.3e-07 Score=93.48 Aligned_cols=57 Identities=18% Similarity=0.220 Sum_probs=46.2
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCcC
Q 008860 285 DEDIRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRR 342 (551)
Q Consensus 285 ~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~ 342 (551)
...+.+.+.+.+++.|++++++++|++|+.++++ +.+...+++.+++|.||+|++..
T Consensus 197 ~~~l~~~l~~~l~~~g~~v~~~~~V~~i~~~~~~-~~~~~~~~~~~~ad~vI~a~p~~ 253 (434)
T PRK07233 197 FATLIDALAEAIEARGGEIRLGTPVTSVVIDGGG-VTGVEVDGEEEDFDAVISTAPPP 253 (434)
T ss_pred HHHHHHHHHHHHHhcCceEEeCCCeeEEEEcCCc-eEEEEeCCceEECCEEEECCCHH
Confidence 3457788888899999999999999999877665 44444567789999999998754
|
|
| >PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria | Back alignment and domain information |
|---|
Probab=98.44 E-value=6.3e-07 Score=90.50 Aligned_cols=29 Identities=34% Similarity=0.578 Sum_probs=26.1
Q ss_pred cEEEECCChHHHHHHHHHHhCCCcEEEEc
Q 008860 74 DLFTIGAGSGGVRASRFAANFGASVAICE 102 (551)
Q Consensus 74 dVvIIGgG~aGl~aA~~l~~~G~~V~liE 102 (551)
||+|||||.||+.||+.+++.|.+|+|+.
T Consensus 1 DViVVGgG~AG~eAA~aaAr~G~~V~Lit 29 (392)
T PF01134_consen 1 DVIVVGGGHAGCEAALAAARMGAKVLLIT 29 (392)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT--EEEEE
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEe
Confidence 79999999999999999999999999994
|
Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A. |
| >PLN00093 geranylgeranyl diphosphate reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.43 E-value=2.1e-06 Score=90.22 Aligned_cols=33 Identities=24% Similarity=0.287 Sum_probs=31.3
Q ss_pred CCccEEEECCChHHHHHHHHHHhCCCcEEEEcc
Q 008860 71 YDFDLFTIGAGSGGVRASRFAANFGASVAICEL 103 (551)
Q Consensus 71 ~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~ 103 (551)
++|||+||||||||+++|+.|++.|++|+|+|+
T Consensus 38 ~~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr 70 (450)
T PLN00093 38 RKLRVAVIGGGPAGACAAETLAKGGIETFLIER 70 (450)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCCCcEEEEec
Confidence 459999999999999999999999999999994
|
|
| >PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A | Back alignment and domain information |
|---|
Probab=98.43 E-value=2.5e-07 Score=96.93 Aligned_cols=43 Identities=37% Similarity=0.532 Sum_probs=34.5
Q ss_pred cEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCeeccCCC
Q 008860 74 DLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGC 125 (551)
Q Consensus 74 dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~ 125 (551)
||||||||+||++||+.+++.|.+|+|||+ ...+||.....+.
T Consensus 1 DVVVvGgG~aG~~AAi~AAr~G~~VlLiE~---------~~~lGG~~t~~~~ 43 (428)
T PF12831_consen 1 DVVVVGGGPAGVAAAIAAARAGAKVLLIEK---------GGFLGGMATSGGV 43 (428)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTS-EEEE-S---------SSSSTGGGGGSSS
T ss_pred CEEEECccHHHHHHHHHHHHCCCEEEEEEC---------CccCCCcceECCc
Confidence 899999999999999999999999999994 6778988766554
|
|
| >TIGR01813 flavo_cyto_c flavocytochrome c | Back alignment and domain information |
|---|
Probab=98.42 E-value=6.6e-06 Score=86.79 Aligned_cols=60 Identities=13% Similarity=0.202 Sum_probs=44.7
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCcccEEEEEcCC-ceEEEEE--CCCe--EEEeeEEEEecCcCCC
Q 008860 285 DEDIRDFVAEQMSLRGIEFHTEESPQAILKSTD-GSLSVKT--NKGT--VDGFSHVMFATGRRPN 344 (551)
Q Consensus 285 ~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~-~~~~V~~--~~G~--~i~~d~vi~a~G~~p~ 344 (551)
...+.+.+.+.+++.|++++++++++++..+++ .++.|.. .+++ .+.++.||+|+|....
T Consensus 129 g~~l~~~l~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~g~~~~~~a~~VVlAtGg~~~ 193 (439)
T TIGR01813 129 GAEIVQKLYKKAKKEGIDTRLNSKVEDLIQDDQGTVVGVVVKGKGKGIYIKAAKAVVLATGGFGS 193 (439)
T ss_pred HHHHHHHHHHHHHHcCCEEEeCCEeeEeEECCCCcEEEEEEEeCCCeEEEEecceEEEecCCCCC
Confidence 345677788888999999999999999987644 3334443 4454 4689999999996443
|
This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton. |
| >PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A | Back alignment and domain information |
|---|
Probab=98.42 E-value=2.5e-06 Score=79.76 Aligned_cols=96 Identities=25% Similarity=0.375 Sum_probs=67.8
Q ss_pred EEEcCcHHHHHHHHHHHhCCCe-EEEEeecCccC--------------CC-C----------------------------
Q 008860 249 AIVGGGYIALEFAGIFSGLTSE-VHVFIRQKKVL--------------RG-F---------------------------- 284 (551)
Q Consensus 249 vViG~G~~g~e~a~~l~~~g~~-Vtlv~~~~~~l--------------~~-~---------------------------- 284 (551)
+|||+|+.|+-+|..|.+.|.+ ++++++.+.+. +. +
T Consensus 1 ~IIGaG~aGl~~a~~l~~~g~~~v~v~e~~~~~Gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLERGIDPVVVLERNDRPGGVWRRYYSYTRLHSPSFFSSDFGLPDFESFSFDDSPEWRWPHDFPS 80 (203)
T ss_dssp EEE--SHHHHHHHHHHHHTT---EEEEESSSSSTTHHHCH-TTTT-BSSSCCTGGSS--CCCHSCHHHHHHHHHSBSSEB
T ss_pred CEECcCHHHHHHHHHHHhCCCCcEEEEeCCCCCCCeeEEeCCCCccccCccccccccCCcccccccccCCCCCCCcccCC
Confidence 6999999999999999999998 99999875331 00 0
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCc--CCCC
Q 008860 285 DEDIRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGR--RPNT 345 (551)
Q Consensus 285 ~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~--~p~~ 345 (551)
.+++.+.+++..++.++++.++++|+++..++++ ..|++.+++++.||.||+|+|. .|+.
T Consensus 81 ~~~v~~yl~~~~~~~~l~i~~~~~V~~v~~~~~~-w~v~~~~~~~~~a~~VVlAtG~~~~p~~ 142 (203)
T PF13738_consen 81 GEEVLDYLQEYAERFGLEIRFNTRVESVRRDGDG-WTVTTRDGRTIRADRVVLATGHYSHPRI 142 (203)
T ss_dssp HHHHHHHHHHHHHHTTGGEETS--EEEEEEETTT-EEEEETTS-EEEEEEEEE---SSCSB--
T ss_pred HHHHHHHHHHHHhhcCcccccCCEEEEEEEeccE-EEEEEEecceeeeeeEEEeeeccCCCCc
Confidence 0123355777778889999999999999999888 8999999978999999999997 4443
|
... |
| >KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.42 E-value=2.6e-06 Score=82.07 Aligned_cols=61 Identities=18% Similarity=0.231 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHhcCcEEEcCcccEEEEEc--CCceEEEEECCCeEEEeeEEEEecCcCCCCC
Q 008860 286 EDIRDFVAEQMSLRGIEFHTEESPQAILKS--TDGSLSVKTNKGTVDGFSHVMFATGRRPNTK 346 (551)
Q Consensus 286 ~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~--~~~~~~V~~~~G~~i~~d~vi~a~G~~p~~~ 346 (551)
....+.++..+++.|+.++.+..+..+.-. ++..+.|.+.+|..+.++.+|+++|.+-+.-
T Consensus 153 ~kslk~~~~~~~~~G~i~~dg~~v~~~~~~~e~~~~v~V~Tt~gs~Y~akkiI~t~GaWi~kl 215 (399)
T KOG2820|consen 153 AKSLKALQDKARELGVIFRDGEKVKFIKFVDEEGNHVSVQTTDGSIYHAKKIIFTVGAWINKL 215 (399)
T ss_pred HHHHHHHHHHHHHcCeEEecCcceeeEeeccCCCceeEEEeccCCeeecceEEEEecHHHHhh
Confidence 345677888999999999999998887632 2224789999999999999999999876653
|
|
| >PF13454 NAD_binding_9: FAD-NAD(P)-binding | Back alignment and domain information |
|---|
Probab=98.41 E-value=1.4e-06 Score=77.73 Aligned_cols=27 Identities=15% Similarity=0.249 Sum_probs=24.9
Q ss_pred EEECCChHHHHHHHHHHhC-----CCcEEEEc
Q 008860 76 FTIGAGSGGVRASRFAANF-----GASVAICE 102 (551)
Q Consensus 76 vIIGgG~aGl~aA~~l~~~-----G~~V~liE 102 (551)
+|||+|++|++++.+|.+. ..+|+|||
T Consensus 1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd 32 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFD 32 (156)
T ss_pred CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEc
Confidence 5999999999999999986 46999999
|
|
| >PRK13339 malate:quinone oxidoreductase; Reviewed | Back alignment and domain information |
|---|
Probab=98.41 E-value=1.2e-05 Score=84.84 Aligned_cols=58 Identities=12% Similarity=0.141 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHH-hcCcEEEcCcccEEEEEc-CCceEEEE---ECCCe--EEEeeEEEEecCcCCC
Q 008860 286 EDIRDFVAEQMS-LRGIEFHTEESPQAILKS-TDGSLSVK---TNKGT--VDGFSHVMFATGRRPN 344 (551)
Q Consensus 286 ~~~~~~l~~~l~-~~Gv~i~~~~~v~~i~~~-~~~~~~V~---~~~G~--~i~~d~vi~a~G~~p~ 344 (551)
..+.+.+.+.+. ..|++++++++|++++.+ +++ +.+. +.+++ ++.+|.||+|+|....
T Consensus 184 ~~L~~aL~~~l~~~~Gv~i~~~~~V~~I~~~~d~~-w~v~v~~t~~g~~~~i~Ad~VV~AAGawS~ 248 (497)
T PRK13339 184 GALTRKLAKHLESHPNAQVKYNHEVVDLERLSDGG-WEVTVKDRNTGEKREQVADYVFIGAGGGAI 248 (497)
T ss_pred HHHHHHHHHHHHhCCCcEEEeCCEEEEEEECCCCC-EEEEEEecCCCceEEEEcCEEEECCCcchH
Confidence 355667777775 459999999999999876 444 5554 34452 6899999999999774
|
|
| >PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=98.40 E-value=1.9e-05 Score=86.11 Aligned_cols=60 Identities=20% Similarity=0.125 Sum_probs=44.8
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCcccEEEEEcC-CceEEEEE---CCCe--EEEeeEEEEecCcCCC
Q 008860 285 DEDIRDFVAEQMSLRGIEFHTEESPQAILKST-DGSLSVKT---NKGT--VDGFSHVMFATGRRPN 344 (551)
Q Consensus 285 ~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~-~~~~~V~~---~~G~--~i~~d~vi~a~G~~p~ 344 (551)
...+...+.+.+++.||+++.++.++++..++ +.++.|.. .+|+ .+.++.||+|||-...
T Consensus 148 G~~i~~~L~~~~~~~gi~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~ 213 (598)
T PRK09078 148 GHAILHTLYQQSLKHNAEFFIEYFALDLIMDDGGVCRGVVAWNLDDGTLHRFRAHMVVLATGGYGR 213 (598)
T ss_pred HHHHHHHHHHHHhhcCCEEEEeEEEEEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEECCCCCcc
Confidence 34566677777788899999999999988765 34455543 4664 5789999999997554
|
|
| >PRK11445 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=98.39 E-value=8.9e-06 Score=83.07 Aligned_cols=53 Identities=15% Similarity=0.117 Sum_probs=40.3
Q ss_pred HHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEE-CCCe--EEEeeEEEEecCcCCCC
Q 008860 291 FVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKT-NKGT--VDGFSHVMFATGRRPNT 345 (551)
Q Consensus 291 ~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~-~~G~--~i~~d~vi~a~G~~p~~ 345 (551)
.+.+ ..+.|++++.++.+++++.++++ +.|.+ .+|+ ++.+|.||.|.|.....
T Consensus 104 ~L~~-~~~~gv~v~~~~~v~~i~~~~~~-~~v~~~~~g~~~~i~a~~vV~AdG~~S~v 159 (351)
T PRK11445 104 WLKS-LIPASVEVYHNSLCRKIWREDDG-YHVIFRADGWEQHITARYLVGADGANSMV 159 (351)
T ss_pred HHHH-HHhcCCEEEcCCEEEEEEEcCCE-EEEEEecCCcEEEEEeCEEEECCCCCcHH
Confidence 3444 34578999999999999877666 66665 5664 68999999999997654
|
|
| >PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=98.39 E-value=7.5e-06 Score=88.61 Aligned_cols=58 Identities=12% Similarity=0.127 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHhc-CcEEEcCcccEEEEEcCCceEEEEEC--CC--eEEEeeEEEEecCcCCCC
Q 008860 287 DIRDFVAEQMSLR-GIEFHTEESPQAILKSTDGSLSVKTN--KG--TVDGFSHVMFATGRRPNT 345 (551)
Q Consensus 287 ~~~~~l~~~l~~~-Gv~i~~~~~v~~i~~~~~~~~~V~~~--~G--~~i~~d~vi~a~G~~p~~ 345 (551)
.+.+.+.+.+.+. |+++++++++++++.++++ +.|++. +| +++.+|.||-|.|.+...
T Consensus 114 ~le~~L~~~~~~~~gv~v~~g~~v~~i~~~~~~-v~v~~~~~~G~~~~i~ad~vVgADG~~S~v 176 (538)
T PRK06183 114 LLEAVLRAGLARFPHVRVRFGHEVTALTQDDDG-VTVTLTDADGQRETVRARYVVGCDGANSFV 176 (538)
T ss_pred HHHHHHHHHHHhCCCcEEEcCCEEEEEEEcCCe-EEEEEEcCCCCEEEEEEEEEEecCCCchhH
Confidence 3455566666664 9999999999999988776 666665 56 479999999999997755
|
|
| >COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.39 E-value=1.1e-06 Score=90.38 Aligned_cols=57 Identities=11% Similarity=0.052 Sum_probs=40.5
Q ss_pred CCHHHHHHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCc
Q 008860 284 FDEDIRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGR 341 (551)
Q Consensus 284 ~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~ 341 (551)
+...+...++..-++...+++++++|++|..+..+ .++.+.+|.++.+|.||+++-.
T Consensus 210 ~~gG~~~l~~al~~~l~~~i~~~~~V~~i~~~~~~-~~~~~~~g~~~~~D~VI~t~p~ 266 (444)
T COG1232 210 LRGGLQSLIEALAEKLEAKIRTGTEVTKIDKKGAG-KTIVDVGGEKITADGVISTAPL 266 (444)
T ss_pred cCccHHHHHHHHHHHhhhceeecceeeEEEEcCCc-cEEEEcCCceEEcceEEEcCCH
Confidence 34334433333333444559999999999988555 7788889999999999998643
|
|
| >PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=98.39 E-value=8.3e-06 Score=84.12 Aligned_cols=57 Identities=11% Similarity=0.184 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHhcC-cEEEcCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCcCCCC
Q 008860 287 DIRDFVAEQMSLRG-IEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNT 345 (551)
Q Consensus 287 ~~~~~l~~~l~~~G-v~i~~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~~ 345 (551)
++.+.+.+.+.+.+ ++++.+++++++..++++ +.|.+.++ ++.+|.||-|-|.+...
T Consensus 105 ~L~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~-v~v~~~~~-~~~adlvIgADG~~S~v 162 (374)
T PRK06617 105 DFKKILLSKITNNPLITLIDNNQYQEVISHNDY-SIIKFDDK-QIKCNLLIICDGANSKV 162 (374)
T ss_pred HHHHHHHHHHhcCCCcEEECCCeEEEEEEcCCe-EEEEEcCC-EEeeCEEEEeCCCCchh
Confidence 45666777777764 999999999999887766 77888777 79999999999998765
|
|
| >TIGR02023 BchP-ChlP geranylgeranyl reductase | Back alignment and domain information |
|---|
Probab=98.38 E-value=1.7e-06 Score=89.61 Aligned_cols=31 Identities=29% Similarity=0.464 Sum_probs=30.0
Q ss_pred ccEEEECCChHHHHHHHHHHhCCCcEEEEcc
Q 008860 73 FDLFTIGAGSGGVRASRFAANFGASVAICEL 103 (551)
Q Consensus 73 ~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~ 103 (551)
|||+||||||||+++|+.|++.|++|+|+|+
T Consensus 1 yDVvIVGaGpAG~~aA~~La~~G~~V~l~E~ 31 (388)
T TIGR02023 1 YDVAVIGGGPSGATAAETLARAGIETILLER 31 (388)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEEC
Confidence 7999999999999999999999999999994
|
This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ). |
| >PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=98.38 E-value=2.6e-05 Score=85.59 Aligned_cols=32 Identities=38% Similarity=0.537 Sum_probs=30.8
Q ss_pred CccEEEECCChHHHHHHHHHHhCCCcEEEEcc
Q 008860 72 DFDLFTIGAGSGGVRASRFAANFGASVAICEL 103 (551)
Q Consensus 72 ~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~ 103 (551)
++||||||+|.||++||+.+++.|.+|+||||
T Consensus 8 ~~DVvVIG~G~AGl~AAl~Aae~G~~V~lieK 39 (626)
T PRK07803 8 SYDVVVIGAGGAGLRAAIEARERGLRVAVVCK 39 (626)
T ss_pred eecEEEECcCHHHHHHHHHHHHCCCCEEEEec
Confidence 58999999999999999999999999999995
|
|
| >PRK15317 alkyl hydroperoxide reductase subunit F; Provisional | Back alignment and domain information |
|---|
Probab=98.37 E-value=3.3e-06 Score=90.74 Aligned_cols=100 Identities=16% Similarity=0.182 Sum_probs=82.2
Q ss_pred CCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeec--Ccc--------C---C-CCCHHHHHHHHHHHHhcCcEEEcCcccE
Q 008860 245 PEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQ--KKV--------L---R-GFDEDIRDFVAEQMSLRGIEFHTEESPQ 310 (551)
Q Consensus 245 ~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~--~~~--------l---~-~~~~~~~~~l~~~l~~~Gv~i~~~~~v~ 310 (551)
..+++|||+|+.|+.+|..+++.|.+|+++... ..+ + + ....++.+.+.+.+++.|++++.+++|.
T Consensus 211 ~~dvvIIGgGpaGl~aA~~la~~G~~v~li~~~~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~V~ 290 (517)
T PRK15317 211 PYDVLVVGGGPAGAAAAIYAARKGIRTGIVAERFGGQVLDTMGIENFISVPETEGPKLAAALEEHVKEYDVDIMNLQRAS 290 (517)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCeeeccCcccccCCCCCCCHHHHHHHHHHHHHHCCCEEEcCCEEE
Confidence 358999999999999999999999999999753 111 0 1 1345777888999999999999999999
Q ss_pred EEEEcCCceEEEEECCCeEEEeeEEEEecCcCCCC
Q 008860 311 AILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNT 345 (551)
Q Consensus 311 ~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~~ 345 (551)
++...++. ..|.+.+|+++.+|.||+|+|..|..
T Consensus 291 ~I~~~~~~-~~V~~~~g~~i~a~~vViAtG~~~r~ 324 (517)
T PRK15317 291 KLEPAAGL-IEVELANGAVLKAKTVILATGARWRN 324 (517)
T ss_pred EEEecCCe-EEEEECCCCEEEcCEEEECCCCCcCC
Confidence 99876544 67888888889999999999998754
|
|
| >PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=98.37 E-value=1.7e-05 Score=86.31 Aligned_cols=59 Identities=12% Similarity=0.079 Sum_probs=43.4
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCcccEEEEEc-CCceEEEEE---CCCe--EEEeeEEEEecCcCC
Q 008860 285 DEDIRDFVAEQMSLRGIEFHTEESPQAILKS-TDGSLSVKT---NKGT--VDGFSHVMFATGRRP 343 (551)
Q Consensus 285 ~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~-~~~~~~V~~---~~G~--~i~~d~vi~a~G~~p 343 (551)
...+...+.+.+++.||+++.++.++++..+ ++.++.+.. .+|+ .+.++.||+|||-..
T Consensus 142 G~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~ 206 (588)
T PRK08958 142 GHALLHTLYQQNLKNHTTIFSEWYALDLVKNQDGAVVGCTAICIETGEVVYFKARATVLATGGAG 206 (588)
T ss_pred HHHHHHHHHHHhhhcCCEEEeCcEEEEEEECCCCEEEEEEEEEcCCCcEEEEEcCeEEECCCCcc
Confidence 3456666777777889999999999999875 344455543 3564 578999999999754
|
|
| >TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit | Back alignment and domain information |
|---|
Probab=98.37 E-value=4.1e-06 Score=90.00 Aligned_cols=100 Identities=18% Similarity=0.179 Sum_probs=81.7
Q ss_pred CCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeec--CccC-----------C-CCCHHHHHHHHHHHHhcCcEEEcCcccE
Q 008860 245 PEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQ--KKVL-----------R-GFDEDIRDFVAEQMSLRGIEFHTEESPQ 310 (551)
Q Consensus 245 ~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~--~~~l-----------~-~~~~~~~~~l~~~l~~~Gv~i~~~~~v~ 310 (551)
..+|+|||+|+.|+.+|..+++.|.+|+++... ..+. + ...+++.+.+.+.+++.|++++.+++|.
T Consensus 212 ~~dVvIIGgGpAGl~AA~~la~~G~~v~li~~~~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~gv~i~~~~~V~ 291 (515)
T TIGR03140 212 PYDVLVVGGGPAGAAAAIYAARKGLRTAMVAERIGGQVKDTVGIENLISVPYTTGSQLAANLEEHIKQYPIDLMENQRAK 291 (515)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCccccCcCcccccccCCCCHHHHHHHHHHHHHHhCCeEEcCCEEE
Confidence 568999999999999999999999999998632 1111 1 1345677788888999999999999999
Q ss_pred EEEEcCCceEEEEECCCeEEEeeEEEEecCcCCCC
Q 008860 311 AILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNT 345 (551)
Q Consensus 311 ~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~~ 345 (551)
++..+++. ..+.+.+|+.+.+|.+|+|+|..|..
T Consensus 292 ~I~~~~~~-~~v~~~~g~~i~~d~lIlAtGa~~~~ 325 (515)
T TIGR03140 292 KIETEDGL-IVVTLESGEVLKAKSVIVATGARWRK 325 (515)
T ss_pred EEEecCCe-EEEEECCCCEEEeCEEEECCCCCcCC
Confidence 99876544 67788888889999999999998754
|
This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP. |
| >PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=98.37 E-value=1.4e-05 Score=86.89 Aligned_cols=59 Identities=20% Similarity=0.191 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEE---ECCCe--EEEeeEEEEecCcCCC
Q 008860 286 EDIRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVK---TNKGT--VDGFSHVMFATGRRPN 344 (551)
Q Consensus 286 ~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~---~~~G~--~i~~d~vi~a~G~~p~ 344 (551)
..+...+.+.+++.||+++.++.++++..+++.+..+. ..+|+ .+.++.||+|||....
T Consensus 135 ~~i~~~L~~~~~~~gi~i~~~t~v~~L~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVlATGG~~~ 198 (575)
T PRK05945 135 HAILHELVNNLRRYGVTIYDEWYVMRLILEDNQAKGVVMYHIADGRLEVVRAKAVMFATGGYGR 198 (575)
T ss_pred HHHHHHHHHHHhhCCCEEEeCcEEEEEEEECCEEEEEEEEEcCCCeEEEEECCEEEECCCCCcC
Confidence 45666777777888999999999999876555434343 34664 5889999999998653
|
|
| >PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G | Back alignment and domain information |
|---|
Probab=98.36 E-value=5.1e-07 Score=68.00 Aligned_cols=36 Identities=33% Similarity=0.527 Sum_probs=31.7
Q ss_pred EECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCeec
Q 008860 77 TIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCV 121 (551)
Q Consensus 77 IIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~~ 121 (551)
|||||++||++|+.|++.|++|+|+|+ ...+||.+.
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~---------~~~~GG~~~ 36 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEK---------NDRLGGRAR 36 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEES---------SSSSSGGGC
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEec---------CcccCccee
Confidence 899999999999999999999999994 667888764
|
... |
| >PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=98.36 E-value=2.7e-05 Score=84.84 Aligned_cols=59 Identities=17% Similarity=0.228 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHhcCcEEEcCcccEEEEEcC-CceEEEEE---CCCe--EEEeeEEEEecCcCCC
Q 008860 286 EDIRDFVAEQMSLRGIEFHTEESPQAILKST-DGSLSVKT---NKGT--VDGFSHVMFATGRRPN 344 (551)
Q Consensus 286 ~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~-~~~~~V~~---~~G~--~i~~d~vi~a~G~~p~ 344 (551)
..+...+.+...+.|++++.++.+.++..++ +.+..|.. .+|+ .+.++.||+|+|-...
T Consensus 148 ~~l~~~L~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~ 212 (591)
T PRK07057 148 HALLHTLYQQNVAAKTQFFVEWMALDLIRDADGDVLGVTALEMETGDVYILEAKTTLFATGGAGR 212 (591)
T ss_pred HHHHHHHHHHHHhcCCEEEeCcEEEEEEEcCCCeEEEEEEEEcCCCeEEEEECCeEEECCCCccc
Confidence 4456666777778899999999999988653 33455543 3554 5789999999997553
|
|
| >PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.36 E-value=1.5e-05 Score=86.71 Aligned_cols=63 Identities=13% Similarity=0.182 Sum_probs=44.6
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCcccEEEEEcCC-ceEEEEE-CCCe--EEEee-EEEEecCcCCC-CCC
Q 008860 285 DEDIRDFVAEQMSLRGIEFHTEESPQAILKSTD-GSLSVKT-NKGT--VDGFS-HVMFATGRRPN-TKN 347 (551)
Q Consensus 285 ~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~-~~~~V~~-~~G~--~i~~d-~vi~a~G~~p~-~~~ 347 (551)
...+...+.+.+++.|++|++++.++++..+++ .++.|.. .+|+ .+.++ .||+|+|-..+ .++
T Consensus 212 g~~~~~~l~~~~~~~gv~i~~~~~~~~Li~d~~g~V~Gv~~~~~~~~~~i~a~~aVilAtGGf~~N~em 280 (584)
T PRK12835 212 GQSLVARLRLALKDAGVPLWLDSPMTELITDPDGAVVGAVVEREGRTLRIGARRGVILATGGFDHDMDW 280 (584)
T ss_pred cHHHHHHHHHHHHhCCceEEeCCEEEEEEECCCCcEEEEEEEeCCcEEEEEeceeEEEecCcccCCHHH
Confidence 445666777888899999999999999988643 4445544 3343 46776 59999976554 443
|
|
| >PRK12843 putative FAD-binding dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.35 E-value=1.7e-05 Score=86.35 Aligned_cols=61 Identities=13% Similarity=0.141 Sum_probs=46.3
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEEC-CCe--EEEe-eEEEEecCcCCCC
Q 008860 285 DEDIRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTN-KGT--VDGF-SHVMFATGRRPNT 345 (551)
Q Consensus 285 ~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~-~G~--~i~~-d~vi~a~G~~p~~ 345 (551)
...+...+.+.+++.|++++.++.++++..+++.++.|... +|+ .+.+ +.||+|+|.....
T Consensus 220 G~~l~~aL~~~~~~~Gv~i~~~t~v~~Li~~~g~V~GV~~~~~g~~~~i~A~~~VVlAtGg~~~n 284 (578)
T PRK12843 220 GNALIGRLLYSLRARGVRILTQTDVESLETDHGRVIGATVVQGGVRRRIRARGGVVLATGGFNRH 284 (578)
T ss_pred cHHHHHHHHHHHHhCCCEEEeCCEEEEEEeeCCEEEEEEEecCCeEEEEEccceEEECCCCcccC
Confidence 55677888899999999999999999988665554556553 343 4665 6899999986654
|
|
| >COG1231 Monoamine oxidase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.35 E-value=2.6e-06 Score=85.96 Aligned_cols=48 Identities=15% Similarity=0.072 Sum_probs=39.1
Q ss_pred HHHHHhcCcEEEcCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCc
Q 008860 293 AEQMSLRGIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGR 341 (551)
Q Consensus 293 ~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~ 341 (551)
+...++.|-.|.++++|.+|..++++ ++|++.+..+..+|.+|+++..
T Consensus 213 ~Afa~ql~~~I~~~~~V~rI~q~~~g-V~Vt~~~~~~~~ad~~i~tiPl 260 (450)
T COG1231 213 EAFAKQLGTRILLNEPVRRIDQDGDG-VTVTADDVGQYVADYVLVTIPL 260 (450)
T ss_pred HHHHHHhhceEEecCceeeEEEcCCe-EEEEeCCcceEEecEEEEecCH
Confidence 33344557788999999999999888 8899988556999999998853
|
|
| >PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=98.34 E-value=1.5e-05 Score=86.82 Aligned_cols=58 Identities=24% Similarity=0.217 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHhcCcEEEcCcccEEEEEcC----CceEEEEE---CCCe--EEEeeEEEEecCcCC
Q 008860 286 EDIRDFVAEQMSLRGIEFHTEESPQAILKST----DGSLSVKT---NKGT--VDGFSHVMFATGRRP 343 (551)
Q Consensus 286 ~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~----~~~~~V~~---~~G~--~i~~d~vi~a~G~~p 343 (551)
..+.+.+.+.+++.||+++.++.++++..++ +.+..+.. .+|+ .+.++.||+|||...
T Consensus 140 ~~i~~~L~~~~~~~gv~i~~~~~v~~Li~~~~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~ 206 (583)
T PRK08205 140 HMILQTLYQNCVKHGVEFFNEFYVLDLLLTETPSGPVAAGVVAYELATGEIHVFHAKAVVFATGGSG 206 (583)
T ss_pred HHHHHHHHHHHHhcCCEEEeCCEEEEEEecCCccCCcEEEEEEEEcCCCeEEEEEeCeEEECCCCCc
Confidence 4566777788888999999999999987654 34444543 4564 578999999999865
|
|
| >PRK06126 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.34 E-value=8.5e-06 Score=88.43 Aligned_cols=57 Identities=12% Similarity=0.225 Sum_probs=42.8
Q ss_pred HHHHHHHHHHh-cCcEEEcCcccEEEEEcCCceEEEEE---CCCe--EEEeeEEEEecCcCCCC
Q 008860 288 IRDFVAEQMSL-RGIEFHTEESPQAILKSTDGSLSVKT---NKGT--VDGFSHVMFATGRRPNT 345 (551)
Q Consensus 288 ~~~~l~~~l~~-~Gv~i~~~~~v~~i~~~~~~~~~V~~---~~G~--~i~~d~vi~a~G~~p~~ 345 (551)
+.+.+.+.+++ .|+++++++++++++.++++ +.+.+ .+|+ ++.+|.||.|.|.+...
T Consensus 128 l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~-v~v~~~~~~~g~~~~i~ad~vVgADG~~S~V 190 (545)
T PRK06126 128 LEPILLEHAAAQPGVTLRYGHRLTDFEQDADG-VTATVEDLDGGESLTIRADYLVGCDGARSAV 190 (545)
T ss_pred HHHHHHHHHHhCCCceEEeccEEEEEEECCCe-EEEEEEECCCCcEEEEEEEEEEecCCcchHH
Confidence 45556666655 48999999999999987766 44554 3453 68999999999987653
|
|
| >KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.33 E-value=3.2e-06 Score=83.34 Aligned_cols=59 Identities=20% Similarity=0.274 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHhcCcEEEcCcccEEEEEcCCc-eEEEEECC------C---------eEEEeeEEEEecCcCCCC
Q 008860 287 DIRDFVAEQMSLRGIEFHTEESPQAILKSTDG-SLSVKTNK------G---------TVDGFSHVMFATGRRPNT 345 (551)
Q Consensus 287 ~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~-~~~V~~~~------G---------~~i~~d~vi~a~G~~p~~ 345 (551)
.+..++-+..++.||+|+.+..+.++..++++ +..|.+.| | -++.+..-|+|-|.+...
T Consensus 184 ~~v~wLg~kAEe~GvEiyPg~aaSevly~edgsVkGiaT~D~GI~k~G~pKd~FerGme~hak~TifAEGc~G~L 258 (621)
T KOG2415|consen 184 QLVRWLGEKAEELGVEIYPGFAASEVLYDEDGSVKGIATNDVGISKDGAPKDTFERGMEFHAKVTIFAEGCHGSL 258 (621)
T ss_pred HHHHHHHHHHHhhCceeccccchhheeEcCCCcEeeEeeccccccCCCCccccccccceecceeEEEeccccchh
Confidence 45677888889999999999999998887765 45566543 2 257788889998887654
|
|
| >PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit | Back alignment and domain information |
|---|
Probab=98.33 E-value=5.1e-05 Score=83.11 Aligned_cols=60 Identities=15% Similarity=0.112 Sum_probs=43.6
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCcccEEEEEc-CCceEEEEE---CCCe--EEEeeEEEEecCcCCC
Q 008860 285 DEDIRDFVAEQMSLRGIEFHTEESPQAILKS-TDGSLSVKT---NKGT--VDGFSHVMFATGRRPN 344 (551)
Q Consensus 285 ~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~-~~~~~~V~~---~~G~--~i~~d~vi~a~G~~p~ 344 (551)
...+...+.+.+++.||+++.++.+.++..+ ++.+..+.. .+|+ .+.++.||+|||-...
T Consensus 186 G~~i~~~L~~~a~~~gv~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~g~ 251 (635)
T PLN00128 186 GHAMLHTLYGQAMKHNTQFFVEYFALDLIMDSDGACQGVIALNMEDGTLHRFRAHSTILATGGYGR 251 (635)
T ss_pred HHHHHHHHHHHHHhCCCEEEEeeEEEEEEEcCCCEEEEEEEEEcCCCeEEEEEcCeEEECCCCCcc
Confidence 3456666777777789999999999998765 344445543 3564 5789999999997543
|
|
| >PLN02464 glycerol-3-phosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=98.32 E-value=9.2e-06 Score=88.92 Aligned_cols=60 Identities=15% Similarity=0.086 Sum_probs=45.9
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCcccEEEEEcC--CceEEEEE---CCCe--EEEeeEEEEecCcCCC
Q 008860 285 DEDIRDFVAEQMSLRGIEFHTEESPQAILKST--DGSLSVKT---NKGT--VDGFSHVMFATGRRPN 344 (551)
Q Consensus 285 ~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~--~~~~~V~~---~~G~--~i~~d~vi~a~G~~p~ 344 (551)
+..+...+.+..++.|++++.+++|.++..++ +....|.+ .+++ ++.+|.||+|+|.+..
T Consensus 231 p~rl~~al~~~A~~~Ga~i~~~~~V~~l~~~~~~g~v~gV~v~d~~tg~~~~i~a~~VVnAaGaws~ 297 (627)
T PLN02464 231 DSRLNVALACTAALAGAAVLNYAEVVSLIKDESTGRIVGARVRDNLTGKEFDVYAKVVVNAAGPFCD 297 (627)
T ss_pred HHHHHHHHHHHHHhCCcEEEeccEEEEEEEecCCCcEEEEEEEECCCCcEEEEEeCEEEECCCHhHH
Confidence 55777888888999999999999999998763 44344443 2343 5899999999998643
|
|
| >PLN02172 flavin-containing monooxygenase FMO GS-OX | Back alignment and domain information |
|---|
Probab=98.31 E-value=1.5e-05 Score=83.93 Aligned_cols=101 Identities=20% Similarity=0.241 Sum_probs=76.6
Q ss_pred CCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccC-------------------------------------------
Q 008860 245 PEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVL------------------------------------------- 281 (551)
Q Consensus 245 ~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l------------------------------------------- 281 (551)
.++|+|||+|+.|+-+|..|.+.|.+|+++++.+.+.
T Consensus 10 ~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~~vGG~W~~~~~~~~d~~~~~~~~~~~~s~~Y~~L~tn~p~~~m~f~ 89 (461)
T PLN02172 10 SQHVAVIGAGAAGLVAARELRREGHTVVVFEREKQVGGLWVYTPKSESDPLSLDPTRSIVHSSVYESLRTNLPRECMGYR 89 (461)
T ss_pred CCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCCCCcceeecCCCcCCCccccCCCCcccchhhhhhhhccCCHhhccCC
Confidence 5789999999999999999999999999999765321
Q ss_pred --CCC---------------CHHHHHHHHHHHHhcCcE--EEcCcccEEEEEcCCceEEEEECCC--e--EEEeeEEEEe
Q 008860 282 --RGF---------------DEDIRDFVAEQMSLRGIE--FHTEESPQAILKSTDGSLSVKTNKG--T--VDGFSHVMFA 338 (551)
Q Consensus 282 --~~~---------------~~~~~~~l~~~l~~~Gv~--i~~~~~v~~i~~~~~~~~~V~~~~G--~--~i~~d~vi~a 338 (551)
+.. ..++.+.+++..+..|+. +.++++|++++..+++ ..|++.++ . +..+|.||+|
T Consensus 90 dfp~~~~~~~~~~~~~~fp~~~ev~~YL~~~a~~fgl~~~I~~~t~V~~V~~~~~~-w~V~~~~~~~~~~~~~~d~VIvA 168 (461)
T PLN02172 90 DFPFVPRFDDESRDSRRYPSHREVLAYLQDFAREFKIEEMVRFETEVVRVEPVDGK-WRVQSKNSGGFSKDEIFDAVVVC 168 (461)
T ss_pred CCCCCcccccccCcCCCCCCHHHHHHHHHHHHHHcCCcceEEecCEEEEEeecCCe-EEEEEEcCCCceEEEEcCEEEEe
Confidence 000 034556677777788988 8999999999886554 67776532 2 4579999999
Q ss_pred cCc--CCCCC
Q 008860 339 TGR--RPNTK 346 (551)
Q Consensus 339 ~G~--~p~~~ 346 (551)
+|. .|+..
T Consensus 169 tG~~~~P~~P 178 (461)
T PLN02172 169 NGHYTEPNVA 178 (461)
T ss_pred ccCCCCCcCC
Confidence 994 56543
|
|
| >PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional | Back alignment and domain information |
|---|
Probab=98.29 E-value=4.2e-06 Score=86.95 Aligned_cols=98 Identities=18% Similarity=0.256 Sum_probs=74.0
Q ss_pred CCeEEEEcCcHHHHHHHHHHHhCCC--eEEEEeecCccC---CCCCHHHH---------HHHHHHHHhcCcEEEcCcccE
Q 008860 245 PEKIAIVGGGYIALEFAGIFSGLTS--EVHVFIRQKKVL---RGFDEDIR---------DFVAEQMSLRGIEFHTEESPQ 310 (551)
Q Consensus 245 ~~~vvViG~G~~g~e~a~~l~~~g~--~Vtlv~~~~~~l---~~~~~~~~---------~~l~~~l~~~Gv~i~~~~~v~ 310 (551)
.++++|||+|+.|+.+|..|++.+. +|+++++.+... +.+...+. ..-.+.+++.||+++.++.|.
T Consensus 3 ~~~vvIIGgG~AG~~aA~~Lr~~~~~~~I~li~~e~~~~y~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~V~ 82 (396)
T PRK09754 3 EKTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDERHLPYERPPLSKSMLLEDSPQLQQVLPANWWQENNVHLHSGVTIK 82 (396)
T ss_pred cCcEEEECChHHHHHHHHHHHhhCCCCCEEEeCCCCCCCCCCCCCCHHHHCCCCccccccCCHHHHHHCCCEEEcCCEEE
Confidence 4689999999999999999999876 799998765421 11222111 001344677899999999999
Q ss_pred EEEEcCCceEEEEECCCeEEEeeEEEEecCcCCCC
Q 008860 311 AILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNT 345 (551)
Q Consensus 311 ~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~~ 345 (551)
.++.+. ..|.+.+|+++.+|.+|+|||.+|..
T Consensus 83 ~id~~~---~~v~~~~g~~~~yd~LViATGs~~~~ 114 (396)
T PRK09754 83 TLGRDT---RELVLTNGESWHWDQLFIATGAAARP 114 (396)
T ss_pred EEECCC---CEEEECCCCEEEcCEEEEccCCCCCC
Confidence 997654 34777888889999999999999864
|
|
| >PRK06475 salicylate hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=98.27 E-value=7.5e-06 Score=85.26 Aligned_cols=58 Identities=10% Similarity=0.113 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHh-cCcEEEcCcccEEEEEcCCceEEEEE---CCCeEEEeeEEEEecCcCCCC
Q 008860 287 DIRDFVAEQMSL-RGIEFHTEESPQAILKSTDGSLSVKT---NKGTVDGFSHVMFATGRRPNT 345 (551)
Q Consensus 287 ~~~~~l~~~l~~-~Gv~i~~~~~v~~i~~~~~~~~~V~~---~~G~~i~~d~vi~a~G~~p~~ 345 (551)
++.+.+.+.+.+ .|++++++++|++++.++++ +.+++ .+++++++|.||-|-|.+...
T Consensus 108 ~l~~~L~~~~~~~~~i~v~~~~~v~~~~~~~~~-v~v~~~~~~~~~~~~adlvIgADG~~S~v 169 (400)
T PRK06475 108 DLQSALLDACRNNPGIEIKLGAEMTSQRQTGNS-ITATIIRTNSVETVSAAYLIACDGVWSML 169 (400)
T ss_pred HHHHHHHHHHHhcCCcEEEECCEEEEEecCCCc-eEEEEEeCCCCcEEecCEEEECCCccHhH
Confidence 455666666655 48999999999999876665 66655 344579999999999988754
|
|
| >TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6 | Back alignment and domain information |
|---|
Probab=98.27 E-value=1.7e-05 Score=83.52 Aligned_cols=58 Identities=10% Similarity=0.135 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHhcC---cEEEcCcccEEEEEc-------CCceEEEEECCCeEEEeeEEEEecCcCCCC
Q 008860 287 DIRDFVAEQMSLRG---IEFHTEESPQAILKS-------TDGSLSVKTNKGTVDGFSHVMFATGRRPNT 345 (551)
Q Consensus 287 ~~~~~l~~~l~~~G---v~i~~~~~v~~i~~~-------~~~~~~V~~~~G~~i~~d~vi~a~G~~p~~ 345 (551)
.+.+.+.+.+++.+ ++++.+++|.+++.+ +++ ++|++.+|+++.+|.||-|-|.....
T Consensus 118 ~l~~~L~~~~~~~~~~~v~i~~~~~v~~i~~~~~~~~~~~~~-v~v~~~~g~~i~a~llVgADG~~S~v 185 (437)
T TIGR01989 118 NIQNSLYNRLQEYNGDNVKILNPARLISVTIPSKYPNDNSNW-VHITLSDGQVLYTKLLIGADGSNSNV 185 (437)
T ss_pred HHHHHHHHHHHhCCCCCeEEecCCeeEEEEeccccccCCCCc-eEEEEcCCCEEEeeEEEEecCCCChh
Confidence 34556666666664 999999999999742 234 77889999999999999999998765
|
This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone |
| >PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins | Back alignment and domain information |
|---|
Probab=98.26 E-value=2.5e-06 Score=87.86 Aligned_cols=30 Identities=33% Similarity=0.509 Sum_probs=28.4
Q ss_pred cEEEECCChHHHHHHHHH--HhCCCcEEEEcc
Q 008860 74 DLFTIGAGSGGVRASRFA--ANFGASVAICEL 103 (551)
Q Consensus 74 dVvIIGgG~aGl~aA~~l--~~~G~~V~liE~ 103 (551)
||+|||||+||+++|.+| ++.|.+|+|||+
T Consensus 1 DviIvGaGpAGlslA~~l~~~~~g~~Vllid~ 32 (374)
T PF05834_consen 1 DVIIVGAGPAGLSLARRLADARPGLSVLLIDP 32 (374)
T ss_pred CEEEECCcHHHHHHHHHHHhcCCCCEEEEEcC
Confidence 899999999999999999 779999999993
|
Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process |
| >PRK09564 coenzyme A disulfide reductase; Reviewed | Back alignment and domain information |
|---|
Probab=98.25 E-value=4.8e-06 Score=88.00 Aligned_cols=101 Identities=28% Similarity=0.421 Sum_probs=74.6
Q ss_pred CeEEEEcCcHHHHHHHHHHHhCC--CeEEEEeecCcc------CC----CC-C--HHHHHHHHHHHHhcCcEEEcCcccE
Q 008860 246 EKIAIVGGGYIALEFAGIFSGLT--SEVHVFIRQKKV------LR----GF-D--EDIRDFVAEQMSLRGIEFHTEESPQ 310 (551)
Q Consensus 246 ~~vvViG~G~~g~e~a~~l~~~g--~~Vtlv~~~~~~------l~----~~-~--~~~~~~l~~~l~~~Gv~i~~~~~v~ 310 (551)
++|+|||+|+.|+.+|..|++++ .+|+++++.+.+ ++ .. + .++.....+.+++.|++++.+++|.
T Consensus 1 ~~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~V~ 80 (444)
T PRK09564 1 MKIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTDIVSFGACGLPYFVGGFFDDPNTMIARTPEEFIKSGIDVKTEHEVV 80 (444)
T ss_pred CeEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCCcceeecCCCceEeccccCCHHHhhcCCHHHHHHCCCeEEecCEEE
Confidence 37999999999999999999875 489999988753 11 11 1 1222334466788899999999999
Q ss_pred EEEEcCCceEEEEE-CCCeEEE--eeEEEEecCcCCCCCC
Q 008860 311 AILKSTDGSLSVKT-NKGTVDG--FSHVMFATGRRPNTKN 347 (551)
Q Consensus 311 ~i~~~~~~~~~V~~-~~G~~i~--~d~vi~a~G~~p~~~~ 347 (551)
+|+.+++. +.+.. .+|+.++ +|.+|+|||.+|+...
T Consensus 81 ~id~~~~~-v~~~~~~~~~~~~~~yd~lviAtG~~~~~~~ 119 (444)
T PRK09564 81 KVDAKNKT-ITVKNLKTGSIFNDTYDKLMIATGARPIIPP 119 (444)
T ss_pred EEECCCCE-EEEEECCCCCEEEecCCEEEECCCCCCCCCC
Confidence 99876654 44443 2355666 9999999999987643
|
|
| >TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase | Back alignment and domain information |
|---|
Probab=98.25 E-value=7.8e-06 Score=84.77 Aligned_cols=57 Identities=11% Similarity=0.038 Sum_probs=41.4
Q ss_pred HHHHHHHHHHhcCcEEEcCcccEEEEE-cCCceEEEEEC-CCe--EEEeeEEEEecCcCCCC
Q 008860 288 IRDFVAEQMSLRGIEFHTEESPQAILK-STDGSLSVKTN-KGT--VDGFSHVMFATGRRPNT 345 (551)
Q Consensus 288 ~~~~l~~~l~~~Gv~i~~~~~v~~i~~-~~~~~~~V~~~-~G~--~i~~d~vi~a~G~~p~~ 345 (551)
+...+.+.+.+.|+.++++.+++.+.. +++. ..|++. +|+ ++++|.||-|-|.+...
T Consensus 105 l~~~L~~~~~~~g~~~~~~~~~v~~~~~~~~~-~~V~~~~~g~~~~i~adlvIGADG~~S~V 165 (390)
T TIGR02360 105 VTRDLMEAREAAGLTTVYDADDVRLHDLAGDR-PYVTFERDGERHRLDCDFIAGCDGFHGVS 165 (390)
T ss_pred HHHHHHHHHHhcCCeEEEeeeeEEEEecCCCc-cEEEEEECCeEEEEEeCEEEECCCCchhh
Confidence 344556666777999999988887755 3333 556664 775 68999999999987754
|
Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway. |
| >PRK06996 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.24 E-value=1.1e-05 Score=83.87 Aligned_cols=55 Identities=13% Similarity=0.116 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEECCC---eEEEeeEEEEecCcC
Q 008860 287 DIRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTNKG---TVDGFSHVMFATGRR 342 (551)
Q Consensus 287 ~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~G---~~i~~d~vi~a~G~~ 342 (551)
.+.+.+.+.+++.|++++.++++++++.++++ +.+.+.++ +++.+|.||-|-|..
T Consensus 116 ~l~~~L~~~~~~~g~~~~~~~~v~~~~~~~~~-v~v~~~~~~g~~~i~a~lvIgADG~~ 173 (398)
T PRK06996 116 SLVAALARAVRGTPVRWLTSTTAHAPAQDADG-VTLALGTPQGARTLRARIAVQAEGGL 173 (398)
T ss_pred HHHHHHHHHHHhCCCEEEcCCeeeeeeecCCe-EEEEECCCCcceEEeeeEEEECCCCC
Confidence 46777888888899999999999999877766 77777754 579999999999963
|
|
| >PRK07236 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.23 E-value=8.2e-06 Score=84.55 Aligned_cols=100 Identities=18% Similarity=0.250 Sum_probs=75.4
Q ss_pred CCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCCC------CCHHHHHHHH-------------------------
Q 008860 245 PEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRG------FDEDIRDFVA------------------------- 293 (551)
Q Consensus 245 ~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~~------~~~~~~~~l~------------------------- 293 (551)
..+|+|||+|+.|+.+|..|++.|.+|+++++.+..... +.+...+.+.
T Consensus 6 ~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~g~gi~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~g~ 85 (386)
T PRK07236 6 GPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPTELDGRGAGIVLQPELLRALAEAGVALPADIGVPSRERIYLDRDGR 85 (386)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCcCCCCceeEeCHHHHHHHHHcCCCcccccccCccceEEEeCCCC
Confidence 468999999999999999999999999999988643321 1222222221
Q ss_pred ------------------HHHHh--cCcEEEcCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCcCCCC
Q 008860 294 ------------------EQMSL--RGIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNT 345 (551)
Q Consensus 294 ------------------~~l~~--~Gv~i~~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~~ 345 (551)
+.|.+ .+++++++++|++++.++++ ++|.+.+|+++.+|.||.|-|.+...
T Consensus 86 ~~~~~~~~~~~~~~~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~-v~v~~~~g~~~~ad~vIgADG~~S~v 156 (386)
T PRK07236 86 VVQRRPMPQTQTSWNVLYRALRAAFPAERYHLGETLVGFEQDGDR-VTARFADGRRETADLLVGADGGRSTV 156 (386)
T ss_pred EeeccCCCccccCHHHHHHHHHHhCCCcEEEcCCEEEEEEecCCe-EEEEECCCCEEEeCEEEECCCCCchH
Confidence 11111 13568999999999887666 78899999999999999999987654
|
|
| >PRK07538 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.21 E-value=2.9e-05 Score=81.28 Aligned_cols=57 Identities=11% Similarity=-0.004 Sum_probs=40.5
Q ss_pred HHHHHHHHHHh-cC-cEEEcCcccEEEEEcCCceEEEEECCC-----eEEEeeEEEEecCcCCCC
Q 008860 288 IRDFVAEQMSL-RG-IEFHTEESPQAILKSTDGSLSVKTNKG-----TVDGFSHVMFATGRRPNT 345 (551)
Q Consensus 288 ~~~~l~~~l~~-~G-v~i~~~~~v~~i~~~~~~~~~V~~~~G-----~~i~~d~vi~a~G~~p~~ 345 (551)
+.+.+.+.+.+ .| +.++++++|++++.++++ +.+.+.++ +++.+|.||-|-|.+...
T Consensus 104 l~~~L~~~~~~~~g~~~i~~~~~v~~~~~~~~~-~~~~~~~~~~g~~~~~~adlvIgADG~~S~v 167 (413)
T PRK07538 104 LQMLLLDAVRERLGPDAVRTGHRVVGFEQDADV-TVVFLGDRAGGDLVSVRGDVLIGADGIHSAV 167 (413)
T ss_pred HHHHHHHHHHhhcCCcEEEcCCEEEEEEecCCc-eEEEEeccCCCccceEEeeEEEECCCCCHHH
Confidence 44555555544 36 579999999999877666 44544332 379999999999987654
|
|
| >PLN02612 phytoene desaturase | Back alignment and domain information |
|---|
Probab=98.21 E-value=7.1e-06 Score=88.91 Aligned_cols=56 Identities=18% Similarity=0.076 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHhcCcEEEcCcccEEEEEcCCc-eEEEEECCCeEEEeeEEEEecCc
Q 008860 286 EDIRDFVAEQMSLRGIEFHTEESPQAILKSTDG-SLSVKTNKGTVDGFSHVMFATGR 341 (551)
Q Consensus 286 ~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~-~~~V~~~~G~~i~~d~vi~a~G~ 341 (551)
..+.+.+.+.+++.|++|+++++|++|+.++++ .+.|.+.+|+.+++|.||+|+..
T Consensus 308 ~~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~v~~~~G~~~~ad~VI~a~p~ 364 (567)
T PLN02612 308 ERLCMPIVDHFQSLGGEVRLNSRIKKIELNDDGTVKHFLLTNGSVVEGDVYVSATPV 364 (567)
T ss_pred HHHHHHHHHHHHhcCCEEEeCCeeeEEEECCCCcEEEEEECCCcEEECCEEEECCCH
Confidence 457788888888999999999999999886555 34578888988999999999864
|
|
| >PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=98.20 E-value=5.8e-05 Score=79.59 Aligned_cols=94 Identities=20% Similarity=0.363 Sum_probs=64.4
Q ss_pred ccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhhccCCCcccC
Q 008860 73 FDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDESNGFGWKYG 152 (551)
Q Consensus 73 ~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~~~ 152 (551)
.+|+|||||++|+.+|..+++.|.+|+|+|. ...+ .|
T Consensus 158 ~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~---------~~~~---------l~------------------------- 194 (438)
T PRK07251 158 ERLGIIGGGNIGLEFAGLYNKLGSKVTVLDA---------ASTI---------LP------------------------- 194 (438)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEec---------CCcc---------CC-------------------------
Confidence 4799999999999999999999999999992 1110 00
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEe-EEEEec--CCEEEE--cCEEEEeCeEEEcCCCCCCCC
Q 008860 153 TEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIEG-RGKIVD--PHTVDV--DGKLYSARHILISVGGRPFIP 224 (551)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~i~--~~~v~v--~g~~~~~d~lviAtG~~p~~p 224 (551)
..+ +.+ .....+.+++.|++++.+ .+..++ ...+.+ +++++.+|.+++|+|.+|+..
T Consensus 195 ---~~~-~~~-----------~~~~~~~l~~~GI~i~~~~~V~~i~~~~~~v~v~~~g~~i~~D~viva~G~~p~~~ 256 (438)
T PRK07251 195 ---REE-PSV-----------AALAKQYMEEDGITFLLNAHTTEVKNDGDQVLVVTEDETYRFDALLYATGRKPNTE 256 (438)
T ss_pred ---CCC-HHH-----------HHHHHHHHHHcCCEEEcCCEEEEEEecCCEEEEEECCeEEEcCEEEEeeCCCCCcc
Confidence 001 011 112234566779998876 344443 233333 677899999999999998864
|
|
| >PTZ00306 NADH-dependent fumarate reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.20 E-value=4e-05 Score=89.80 Aligned_cols=34 Identities=29% Similarity=0.370 Sum_probs=31.7
Q ss_pred CCCccEEEECCChHHHHHHHHHHhCCCcEEEEcc
Q 008860 70 HYDFDLFTIGAGSGGVRASRFAANFGASVAICEL 103 (551)
Q Consensus 70 ~~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~ 103 (551)
+.++||||||+|.||++||+++++.|.+|+|+||
T Consensus 407 t~~~DVvVVG~G~AGl~AAi~Aae~Ga~VivlEK 440 (1167)
T PTZ00306 407 SLPARVIVVGGGLAGCSAAIEAASCGAQVILLEK 440 (1167)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEEc
Confidence 3468999999999999999999999999999995
|
|
| >COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.17 E-value=7.8e-06 Score=85.44 Aligned_cols=59 Identities=17% Similarity=0.140 Sum_probs=47.0
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEECC---Ce--EEEeeEEEEecCcCCC
Q 008860 285 DEDIRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTNK---GT--VDGFSHVMFATGRRPN 344 (551)
Q Consensus 285 ~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~---G~--~i~~d~vi~a~G~~p~ 344 (551)
|..+.-.......++|-++...++|+++..+++ ++.|+..| |+ .+.++.||.|+|.+..
T Consensus 163 daRLv~~~a~~A~~~Ga~il~~~~v~~~~re~~-v~gV~~~D~~tg~~~~ira~~VVNAaGpW~d 226 (532)
T COG0578 163 DARLVAANARDAAEHGAEILTYTRVESLRREGG-VWGVEVEDRETGETYEIRARAVVNAAGPWVD 226 (532)
T ss_pred hHHHHHHHHHHHHhcccchhhcceeeeeeecCC-EEEEEEEecCCCcEEEEEcCEEEECCCccHH
Confidence 455666677778899999999999999998877 56677654 33 5889999999998654
|
|
| >TIGR01789 lycopene_cycl lycopene cyclase | Back alignment and domain information |
|---|
Probab=98.16 E-value=2.2e-05 Score=80.60 Aligned_cols=30 Identities=17% Similarity=0.179 Sum_probs=28.4
Q ss_pred cEEEECCChHHHHHHHHHHhC--CCcEEEEcc
Q 008860 74 DLFTIGAGSGGVRASRFAANF--GASVAICEL 103 (551)
Q Consensus 74 dVvIIGgG~aGl~aA~~l~~~--G~~V~liE~ 103 (551)
||+|||||+||+++|.+|++. |++|+|+|+
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~ 32 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEA 32 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcCCCCeEEEEeC
Confidence 799999999999999999986 999999993
|
This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium. |
| >PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan | Back alignment and domain information |
|---|
Probab=98.15 E-value=1.3e-05 Score=84.46 Aligned_cols=58 Identities=21% Similarity=0.294 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHhcCcEEEcCcccEEEEEcCCc-eEEEEECCCeEEEeeEEEEecCcCCCC
Q 008860 287 DIRDFVAEQMSLRGIEFHTEESPQAILKSTDG-SLSVKTNKGTVDGFSHVMFATGRRPNT 345 (551)
Q Consensus 287 ~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~-~~~V~~~~G~~i~~d~vi~a~G~~p~~ 345 (551)
.+.+.|.+..++.||+++.+ .|.++..++++ +..|++.+|+++++|.+|-|+|+....
T Consensus 155 ~fd~~L~~~A~~~Gv~~~~g-~V~~v~~~~~g~i~~v~~~~g~~i~ad~~IDASG~~s~L 213 (454)
T PF04820_consen 155 KFDQFLRRHAEERGVEVIEG-TVVDVELDEDGRITAVRLDDGRTIEADFFIDASGRRSLL 213 (454)
T ss_dssp HHHHHHHHHHHHTT-EEEET--EEEEEE-TTSEEEEEEETTSEEEEESEEEE-SGGG-CC
T ss_pred HHHHHHHHHHhcCCCEEEeC-EEEEEEEcCCCCEEEEEECCCCEEEEeEEEECCCccchh
Confidence 45677888888999999988 57777776665 457999999999999999999997654
|
This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A .... |
| >COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.12 E-value=1.1e-05 Score=82.06 Aligned_cols=100 Identities=18% Similarity=0.216 Sum_probs=80.5
Q ss_pred CCeEEEEcCcHHHHHHHHHHHhCC--CeEEEEeecCccCCC-----------CCHHHHHHHHHHHHhcC-cEEEcCcccE
Q 008860 245 PEKIAIVGGGYIALEFAGIFSGLT--SEVHVFIRQKKVLRG-----------FDEDIRDFVAEQMSLRG-IEFHTEESPQ 310 (551)
Q Consensus 245 ~~~vvViG~G~~g~e~a~~l~~~g--~~Vtlv~~~~~~l~~-----------~~~~~~~~l~~~l~~~G-v~i~~~~~v~ 310 (551)
.+++||+|+|+-|+.++..|.+.- .+|+++++.+..+-. -+.++...+.+.++..+ |+++.+ +|+
T Consensus 3 ~~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~hl~~plL~eva~g~l~~~~i~~p~~~~~~~~~~v~~~~~-~V~ 81 (405)
T COG1252 3 KKRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDYHLFTPLLYEVATGTLSESEIAIPLRALLRKSGNVQFVQG-EVT 81 (405)
T ss_pred CceEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCCCccccchhhhhhhcCCCChhheeccHHHHhcccCceEEEEE-EEE
Confidence 478999999999999999998874 899999998865311 13345555788888666 999877 899
Q ss_pred EEEEcCCceEEEEECCCeEEEeeEEEEecCcCCCCCCC
Q 008860 311 AILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNTKNL 348 (551)
Q Consensus 311 ~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~~~~l 348 (551)
+|+.++. +|.+.+++.+++|.+|+|+|..++...+
T Consensus 82 ~ID~~~k---~V~~~~~~~i~YD~LVvalGs~~~~fgi 116 (405)
T COG1252 82 DIDRDAK---KVTLADLGEISYDYLVVALGSETNYFGI 116 (405)
T ss_pred EEcccCC---EEEeCCCccccccEEEEecCCcCCcCCC
Confidence 9987764 4888887789999999999999988653
|
|
| >KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.10 E-value=2.8e-05 Score=81.24 Aligned_cols=71 Identities=17% Similarity=0.082 Sum_probs=56.3
Q ss_pred EEEEeecCccCCCCCHHHHHHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCcCCC
Q 008860 271 VHVFIRQKKVLRGFDEDIRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPN 344 (551)
Q Consensus 271 Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~ 344 (551)
-.+..+.+..+. +..+.+.+....++.|..|+.++.|++|....++...|++.-|. |++..||.|+|++..
T Consensus 174 g~Ly~P~DG~~D--P~~lC~ala~~A~~~GA~viE~cpV~~i~~~~~~~~gVeT~~G~-iet~~~VNaaGvWAr 244 (856)
T KOG2844|consen 174 GGLYSPGDGVMD--PAGLCQALARAASALGALVIENCPVTGLHVETDKFGGVETPHGS-IETECVVNAAGVWAR 244 (856)
T ss_pred eeeecCCCcccC--HHHHHHHHHHHHHhcCcEEEecCCcceEEeecCCccceeccCcc-eecceEEechhHHHH
Confidence 345555554331 34456888888999999999999999999877766689999886 999999999999874
|
|
| >TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase | Back alignment and domain information |
|---|
Probab=98.10 E-value=4.6e-05 Score=80.95 Aligned_cols=94 Identities=21% Similarity=0.435 Sum_probs=63.9
Q ss_pred ccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhhccCCCcccC
Q 008860 73 FDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDESNGFGWKYG 152 (551)
Q Consensus 73 ~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~~~ 152 (551)
.+|+|||||+.|+.+|..|++.|.+|+|+|+ ...+ +|
T Consensus 171 ~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~---------~~~~---------l~------------------------- 207 (461)
T TIGR01350 171 ESLVIIGGGVIGIEFASIFASLGSKVTVIEM---------LDRI---------LP------------------------- 207 (461)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEEc---------CCCC---------CC-------------------------
Confidence 5899999999999999999999999999992 1110 01
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEe-EEEEec--CCEEEE---cC--EEEEeCeEEEcCCCCCCCC
Q 008860 153 TEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIEG-RGKIVD--PHTVDV---DG--KLYSARHILISVGGRPFIP 224 (551)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~i~--~~~v~v---~g--~~~~~d~lviAtG~~p~~p 224 (551)
..+ .. +...+.+.+++.|++++.+ .+..++ ...+.+ ++ ..+.+|.+++|+|.+|+..
T Consensus 208 ---~~~-~~-----------~~~~~~~~l~~~gi~i~~~~~v~~i~~~~~~v~v~~~~g~~~~i~~D~vi~a~G~~p~~~ 272 (461)
T TIGR01350 208 ---GED-AE-----------VSKVVAKALKKKGVKILTNTKVTAVEKNDDQVVYENKGGETETLTGEKVLVAVGRKPNTE 272 (461)
T ss_pred ---CCC-HH-----------HHHHHHHHHHHcCCEEEeCCEEEEEEEeCCEEEEEEeCCcEEEEEeCEEEEecCCcccCC
Confidence 001 01 1112234556679999887 344443 334433 45 5799999999999998765
|
The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide. |
| >TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein | Back alignment and domain information |
|---|
Probab=98.10 E-value=1.2e-05 Score=82.68 Aligned_cols=97 Identities=11% Similarity=0.094 Sum_probs=74.4
Q ss_pred eEEEEcCcHHHHHHHHHHHhC---CCeEEEEeecCccC--CCC---------CHHHHHHHHHHHHhcCcEEEcCcccEEE
Q 008860 247 KIAIVGGGYIALEFAGIFSGL---TSEVHVFIRQKKVL--RGF---------DEDIRDFVAEQMSLRGIEFHTEESPQAI 312 (551)
Q Consensus 247 ~vvViG~G~~g~e~a~~l~~~---g~~Vtlv~~~~~~l--~~~---------~~~~~~~l~~~l~~~Gv~i~~~~~v~~i 312 (551)
+|+|||+|+.|+.+|..+++. +.+|+++++.+... +.+ ..++...+.+.+++.|++++.+ +|++|
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~gv~~~~~-~v~~i 79 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTTPYSGMLPGMIAGHYSLDEIRIDLRRLARQAGARFVIA-EATGI 79 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCCCcccchhhHHHheeCCHHHhcccHHHHHHhcCCEEEEE-EEEEE
Confidence 489999999999999998643 67999999877532 111 1223334566777889999876 89999
Q ss_pred EEcCCceEEEEECCCeEEEeeEEEEecCcCCCCCC
Q 008860 313 LKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNTKN 347 (551)
Q Consensus 313 ~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~~~~ 347 (551)
+.+++ .|.+.+|+++.+|.+|+|||..|+...
T Consensus 80 d~~~~---~V~~~~g~~~~yD~LviAtG~~~~~~~ 111 (364)
T TIGR03169 80 DPDRR---KVLLANRPPLSYDVLSLDVGSTTPLSG 111 (364)
T ss_pred ecccC---EEEECCCCcccccEEEEccCCCCCCCC
Confidence 87654 478888888999999999999987654
|
Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown. |
| >PTZ00318 NADH dehydrogenase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=98.09 E-value=1.7e-05 Score=83.19 Aligned_cols=101 Identities=14% Similarity=0.156 Sum_probs=74.3
Q ss_pred CCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccC--CCC---------CHHHHHHHHHHHHhcCcEEEcCcccEEEE
Q 008860 245 PEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVL--RGF---------DEDIRDFVAEQMSLRGIEFHTEESPQAIL 313 (551)
Q Consensus 245 ~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l--~~~---------~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~ 313 (551)
.++|+|||+|+.|+.+|..|.+.+.+|+++++.+.+. +.+ ..++...+.+.++..|++++.+ +|++|+
T Consensus 10 ~~~vVIvGgG~aGl~~a~~L~~~~~~ItlI~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~-~V~~Id 88 (424)
T PTZ00318 10 KPNVVVLGTGWAGAYFVRNLDPKKYNITVISPRNHMLFTPLLPQTTTGTLEFRSICEPVRPALAKLPNRYLRA-VVYDVD 88 (424)
T ss_pred CCeEEEECCCHHHHHHHHHhCcCCCeEEEEcCCCCcchhhhHHHhcccCCChHHhHHHHHHHhccCCeEEEEE-EEEEEE
Confidence 4689999999999999999977678999999877642 111 1223334556677778888765 899998
Q ss_pred EcCCceEEEEE--------CCCeEEEeeEEEEecCcCCCCCC
Q 008860 314 KSTDGSLSVKT--------NKGTVDGFSHVMFATGRRPNTKN 347 (551)
Q Consensus 314 ~~~~~~~~V~~--------~~G~~i~~d~vi~a~G~~p~~~~ 347 (551)
.+++. +.+.. .+|+++++|.+|+|+|..|+...
T Consensus 89 ~~~~~-v~~~~~~~~~~~~~~g~~i~yD~LViAtGs~~~~~~ 129 (424)
T PTZ00318 89 FEEKR-VKCGVVSKSNNANVNTFSVPYDKLVVAHGARPNTFN 129 (424)
T ss_pred cCCCE-EEEecccccccccCCceEecCCEEEECCCcccCCCC
Confidence 76654 33321 45668999999999999987543
|
|
| >COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=98.09 E-value=3.3e-06 Score=89.87 Aligned_cols=57 Identities=21% Similarity=0.151 Sum_probs=49.6
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCc
Q 008860 285 DEDIRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGR 341 (551)
Q Consensus 285 ~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~ 341 (551)
-..+.+.+.+.+++.|++|+++++|++|..++++.+++.+.+|+.+++|.||.+...
T Consensus 223 ~~al~~aL~~~~~~~Gg~I~~~~~V~~I~v~~g~g~~~~~~~g~~~~ad~vv~~~~~ 279 (487)
T COG1233 223 MGALVDALAELAREHGGEIRTGAEVSQILVEGGKGVGVRTSDGENIEADAVVSNADP 279 (487)
T ss_pred HHHHHHHHHHHHHHcCCEEECCCceEEEEEeCCcceEEeccccceeccceeEecCch
Confidence 446889999999999999999999999998877557788888877999999998766
|
|
| >PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ] | Back alignment and domain information |
|---|
Probab=98.08 E-value=9.8e-06 Score=75.57 Aligned_cols=101 Identities=21% Similarity=0.320 Sum_probs=72.9
Q ss_pred eEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccC---CCCCH-----------HHH--H--HHHHHHHhcCcEEEcCcc
Q 008860 247 KIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVL---RGFDE-----------DIR--D--FVAEQMSLRGIEFHTEES 308 (551)
Q Consensus 247 ~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l---~~~~~-----------~~~--~--~l~~~l~~~Gv~i~~~~~ 308 (551)
+|+|||+|+.|+.+|..|++.+.+|+++++.+... ..... ... . .+.+.+...+++++.+++
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 80 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSPGTPYNSGCIPSPLLVEIAPHRHEFLPARLFKLVDQLKNRGVEIRLNAK 80 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEESSSSHHHHHHSHHHHHHHHHHHHHHHHHHHHHHGHHHHHHHHHTHEEEHHHT
T ss_pred CEEEEecHHHHHHHHHHHhcCCCeEEEEecccccccccccccccccccccccccccccccccccccccccceEEEeeccc
Confidence 58999999999999999999999999997655310 00000 000 1 334445788999999999
Q ss_pred cEEEEEcCCc----eEEE---EECCCeEEEeeEEEEecCcCCCCCC
Q 008860 309 PQAILKSTDG----SLSV---KTNKGTVDGFSHVMFATGRRPNTKN 347 (551)
Q Consensus 309 v~~i~~~~~~----~~~V---~~~~G~~i~~d~vi~a~G~~p~~~~ 347 (551)
+.+++..... ...+ ...++.++.+|.+|+|+|..|+...
T Consensus 81 v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~~~~~~ 126 (201)
T PF07992_consen 81 VVSIDPESKRVVCPAVTIQVVETGDGREIKYDYLVIATGSRPRTPN 126 (201)
T ss_dssp EEEEEESTTEEEETCEEEEEEETTTEEEEEEEEEEEESTEEEEEES
T ss_pred cccccccccccccCcccceeeccCCceEecCCeeeecCccccceee
Confidence 9999877652 1122 3345668999999999999887654
|
Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E .... |
| >PRK14989 nitrite reductase subunit NirD; Provisional | Back alignment and domain information |
|---|
Probab=98.08 E-value=1.6e-05 Score=89.54 Aligned_cols=99 Identities=18% Similarity=0.310 Sum_probs=76.1
Q ss_pred CeEEEEcCcHHHHHHHHHHHhC----CCeEEEEeecCccC------CC-C----CHHHHHHHHHHHHhcCcEEEcCcccE
Q 008860 246 EKIAIVGGGYIALEFAGIFSGL----TSEVHVFIRQKKVL------RG-F----DEDIRDFVAEQMSLRGIEFHTEESPQ 310 (551)
Q Consensus 246 ~~vvViG~G~~g~e~a~~l~~~----g~~Vtlv~~~~~~l------~~-~----~~~~~~~l~~~l~~~Gv~i~~~~~v~ 310 (551)
++++|||+|+.|+.+|..|++. +.+|+++.+.+++. +. + ..++.....+.+++.||+++.++.|.
T Consensus 4 ~kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~~~Y~r~~L~~~~~~~~~~~l~~~~~~~~~~~gI~~~~g~~V~ 83 (847)
T PRK14989 4 VRLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPRIAYDRVHLSSYFSHHTAEELSLVREGFYEKHGIKVLVGERAI 83 (847)
T ss_pred CcEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCCCcccCCcchHhHcCCCHHHccCCCHHHHHhCCCEEEcCCEEE
Confidence 5899999999999999999764 46899999887642 11 1 11222223456788999999999999
Q ss_pred EEEEcCCceEEEEECCCeEEEeeEEEEecCcCCCCCC
Q 008860 311 AILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNTKN 347 (551)
Q Consensus 311 ~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~~~~ 347 (551)
+|+.+. ..|.+.+|+++.+|.+|+|||..|....
T Consensus 84 ~Id~~~---~~V~~~~G~~i~yD~LVIATGs~p~~p~ 117 (847)
T PRK14989 84 TINRQE---KVIHSSAGRTVFYDKLIMATGSYPWIPP 117 (847)
T ss_pred EEeCCC---cEEEECCCcEEECCEEEECCCCCcCCCC
Confidence 997653 3477888888999999999999987654
|
|
| >PRK07208 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.06 E-value=4.7e-06 Score=89.02 Aligned_cols=57 Identities=18% Similarity=0.194 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHhcCcEEEcCcccEEEEEcCCceE-EEEE--CCCe--EEEeeEEEEecCcC
Q 008860 286 EDIRDFVAEQMSLRGIEFHTEESPQAILKSTDGSL-SVKT--NKGT--VDGFSHVMFATGRR 342 (551)
Q Consensus 286 ~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~-~V~~--~~G~--~i~~d~vi~a~G~~ 342 (551)
..+.+.+.+.+++.|++++++++|++|..++++.+ .+.. .+|+ ++.+|.||+++...
T Consensus 218 ~~l~~~L~~~l~~~g~~i~~~~~V~~I~~~~~~~v~~~~~~~~~g~~~~~~ad~VI~a~p~~ 279 (479)
T PRK07208 218 GQLWETAAEKLEALGGKVVLNAKVVGLHHDGDGRIAVVVVNDTDGTEETVTADQVISSMPLR 279 (479)
T ss_pred chHHHHHHHHHHHcCCEEEeCCEEEEEEEcCCcEEEEEEEEcCCCCEEEEEcCEEEECCCHH
Confidence 45778888899999999999999999998776533 3333 2453 58899999988753
|
|
| >TIGR02032 GG-red-SF geranylgeranyl reductase family | Back alignment and domain information |
|---|
Probab=98.06 E-value=4e-05 Score=75.97 Aligned_cols=97 Identities=15% Similarity=0.105 Sum_probs=75.8
Q ss_pred eEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCC---------------------------------------C----
Q 008860 247 KIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLR---------------------------------------G---- 283 (551)
Q Consensus 247 ~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~---------------------------------------~---- 283 (551)
.|+|||+|+.|+-+|..|++.|.+|+++++.+.... .
T Consensus 2 dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (295)
T TIGR02032 2 DVVVVGAGPAGASAAYRLADKGLRVLLLEKKSFPRYKPCGGALSPRVLEELDLPLELIVNLVRGARFFSPNGDSVEIPIE 81 (295)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCcccccCccCHhHHHHhcCCchhhhhheeeEEEEcCCCcEEEeccC
Confidence 489999999999999999999999999998754210 0
Q ss_pred ------C-CHHHHHHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEECC-CeEEEeeEEEEecCcCCC
Q 008860 284 ------F-DEDIRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTNK-GTVDGFSHVMFATGRRPN 344 (551)
Q Consensus 284 ------~-~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~-G~~i~~d~vi~a~G~~p~ 344 (551)
+ ..++.+.+.+.+++.|++++.+++++++..++++ +.+.+.+ +.++.+|.||.|+|....
T Consensus 82 ~~~~~~i~r~~l~~~l~~~~~~~gv~~~~~~~v~~~~~~~~~-~~~~~~~~~~~~~a~~vv~a~G~~s~ 149 (295)
T TIGR02032 82 TELAYVIDRDAFDEQLAERAQEAGAELRLGTTVLDVEIHDDR-VVVIVRGGEGTVTAKIVIGADGSRSI 149 (295)
T ss_pred CCcEEEEEHHHHHHHHHHHHHHcCCEEEeCcEEeeEEEeCCE-EEEEEcCccEEEEeCEEEECCCcchH
Confidence 0 1234456777788899999999999999877665 5555543 457999999999998754
|
This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates. |
| >PRK13512 coenzyme A disulfide reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.06 E-value=1.7e-05 Score=83.49 Aligned_cols=100 Identities=16% Similarity=0.209 Sum_probs=70.7
Q ss_pred CeEEEEcCcHHHHHHHHHHHhC--CCeEEEEeecCccC--C-CCCHH-------HHHHH----HHHHHhcCcEEEcCccc
Q 008860 246 EKIAIVGGGYIALEFAGIFSGL--TSEVHVFIRQKKVL--R-GFDED-------IRDFV----AEQMSLRGIEFHTEESP 309 (551)
Q Consensus 246 ~~vvViG~G~~g~e~a~~l~~~--g~~Vtlv~~~~~~l--~-~~~~~-------~~~~l----~~~l~~~Gv~i~~~~~v 309 (551)
++|+|||+|+.|+.+|..|+++ +.+|+++++.+.+. + .++.- ..+.+ .+..++.|++++.+++|
T Consensus 2 ~~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~~V 81 (438)
T PRK13512 2 PKIIVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMSFANCALPYYIGEVVEDRKYALAYTPEKFYDRKQITVKTYHEV 81 (438)
T ss_pred CeEEEECCcHHHHHHHHHHHhhCCCCCEEEEECCCCcccccCCcchhhcCccCCHHHcccCCHHHHHHhCCCEEEeCCEE
Confidence 4799999999999999999887 57899999986432 1 01110 01111 23345679999999999
Q ss_pred EEEEEcCCceEEEEECC-Ce--EEEeeEEEEecCcCCCCC
Q 008860 310 QAILKSTDGSLSVKTNK-GT--VDGFSHVMFATGRRPNTK 346 (551)
Q Consensus 310 ~~i~~~~~~~~~V~~~~-G~--~i~~d~vi~a~G~~p~~~ 346 (551)
++|+.+++. +.+...+ ++ ++.+|.+|+|||.+|+..
T Consensus 82 ~~Id~~~~~-v~~~~~~~~~~~~~~yd~lviAtGs~~~~~ 120 (438)
T PRK13512 82 IAINDERQT-VTVLNRKTNEQFEESYDKLILSPGASANSL 120 (438)
T ss_pred EEEECCCCE-EEEEECCCCcEEeeecCEEEECCCCCCCCC
Confidence 999876644 4454432 22 468999999999999754
|
|
| >TIGR02485 CobZ_N-term precorrin 3B synthase CobZ | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.00011 Score=77.19 Aligned_cols=58 Identities=10% Similarity=0.019 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHhcCcEEEcCcccEEEEEc--CCceEEEEEC-CCeEEEeeEEEEecCcCC
Q 008860 286 EDIRDFVAEQMSLRGIEFHTEESPQAILKS--TDGSLSVKTN-KGTVDGFSHVMFATGRRP 343 (551)
Q Consensus 286 ~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~--~~~~~~V~~~-~G~~i~~d~vi~a~G~~p 343 (551)
..+.+.+.+.+++.|++++++++++++..+ ++.++.|... ++..+.++.||+|+|-..
T Consensus 123 ~~l~~~L~~~a~~~Gv~i~~~~~v~~l~~~~~~g~v~gv~~~~~~~~i~ak~VIlAtGG~~ 183 (432)
T TIGR02485 123 KALTNALYSSAERLGVEIRYGIAVDRIPPEAFDGAHDGPLTTVGTHRITTQALVLAAGGLG 183 (432)
T ss_pred HHHHHHHHHHHHHcCCEEEeCCEEEEEEecCCCCeEEEEEEcCCcEEEEcCEEEEcCCCcc
Confidence 346677888889999999999999999876 3334445543 345789999999999543
|
CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484). |
| >PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.00021 Score=77.69 Aligned_cols=42 Identities=17% Similarity=0.088 Sum_probs=35.9
Q ss_pred EEcCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCcCCCC
Q 008860 303 FHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNT 345 (551)
Q Consensus 303 i~~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~~ 345 (551)
++.+++|++++.++++ ++|.+.+|+++.+|.||.|-|.+...
T Consensus 209 i~~g~~V~~I~~~~d~-VtV~~~dG~ti~aDlVVGADG~~S~v 250 (668)
T PLN02927 209 IRNESNVVDFEDSGDK-VTVVLENGQRYEGDLLVGADGIWSKV 250 (668)
T ss_pred EEcCCEEEEEEEeCCE-EEEEECCCCEEEcCEEEECCCCCcHH
Confidence 6788899999877666 77899999889999999999987654
|
|
| >PRK12770 putative glutamate synthase subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=98.04 E-value=2e-05 Score=80.46 Aligned_cols=103 Identities=22% Similarity=0.260 Sum_probs=70.5
Q ss_pred CCCCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCCC---------CCHHHHHHHHHHHHhcCcEEEcCcccEEE
Q 008860 242 PSKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRG---------FDEDIRDFVAEQMSLRGIEFHTEESPQAI 312 (551)
Q Consensus 242 ~~~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~~---------~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i 312 (551)
.+.+++|+|||+|+.|+++|..|++.|.+|+++++.+.+... .+.+......+.+.+.|++++.++.+..+
T Consensus 15 ~~~~~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~v~~~ 94 (352)
T PRK12770 15 PPTGKKVAIIGAGPAGLAAAGYLACLGYEVHVYDKLPEPGGLMLFGIPEFRIPIERVREGVKELEEAGVVFHTRTKVCCG 94 (352)
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCceeeecCcccccCHHHHHHHHHHHHhCCeEEecCcEEeec
Confidence 445789999999999999999999999999999998765321 22333344456667779999999877654
Q ss_pred EE---cCCceEEEEE--CCCeEEEeeEEEEecCcC-CC
Q 008860 313 LK---STDGSLSVKT--NKGTVDGFSHVMFATGRR-PN 344 (551)
Q Consensus 313 ~~---~~~~~~~V~~--~~G~~i~~d~vi~a~G~~-p~ 344 (551)
.. ..+....... .++..+.+|.||+|+|.. |.
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~d~lviAtGs~~~~ 132 (352)
T PRK12770 95 EPLHEEEGDEFVERIVSLEELVKKYDAVLIATGTWKSR 132 (352)
T ss_pred cccccccccccccccCCHHHHHhhCCEEEEEeCCCCCC
Confidence 32 1111011111 112237899999999984 44
|
|
| >TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit | Back alignment and domain information |
|---|
Probab=98.04 E-value=1.5e-05 Score=89.66 Aligned_cols=97 Identities=22% Similarity=0.245 Sum_probs=74.9
Q ss_pred EEEEcCcHHHHHHHHHHHhCC---CeEEEEeecCccC--C-CCC---------HHHHHHHHHHHHhcCcEEEcCcccEEE
Q 008860 248 IAIVGGGYIALEFAGIFSGLT---SEVHVFIRQKKVL--R-GFD---------EDIRDFVAEQMSLRGIEFHTEESPQAI 312 (551)
Q Consensus 248 vvViG~G~~g~e~a~~l~~~g---~~Vtlv~~~~~~l--~-~~~---------~~~~~~l~~~l~~~Gv~i~~~~~v~~i 312 (551)
|+|||+|+.|+.+|..+++++ .+|+++++.+.+. + .+. +++.....+.+++.||+++++++|+.|
T Consensus 1 iVIIG~G~AG~~aa~~l~~~~~~~~~Itvi~~e~~~~y~r~~L~~~l~g~~~~~~l~~~~~~~~~~~gv~~~~g~~V~~I 80 (785)
T TIGR02374 1 LVLVGNGMAGHRCIEEVLKLNRHMFEITIFGEEPHPNYNRILLSSVLQGEADLDDITLNSKDWYEKHGITLYTGETVIQI 80 (785)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCCeEEEEeCCCCCCcccccccHHHCCCCCHHHccCCCHHHHHHCCCEEEcCCeEEEE
Confidence 589999999999999988764 5899999887642 0 011 112222356778899999999999999
Q ss_pred EEcCCceEEEEECCCeEEEeeEEEEecCcCCCCCC
Q 008860 313 LKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNTKN 347 (551)
Q Consensus 313 ~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~~~~ 347 (551)
+.+. ..|.+.+|+++.+|.+|+|||..|+...
T Consensus 81 d~~~---k~V~~~~g~~~~yD~LVlATGs~p~~p~ 112 (785)
T TIGR02374 81 DTDQ---KQVITDAGRTLSYDKLILATGSYPFILP 112 (785)
T ss_pred ECCC---CEEEECCCcEeeCCEEEECCCCCcCCCC
Confidence 8654 3478888988999999999999987653
|
|
| >PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle | Back alignment and domain information |
|---|
Probab=98.02 E-value=6.8e-05 Score=76.23 Aligned_cols=95 Identities=19% Similarity=0.291 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHhc-CcEEEcCcccEEEEEcCCceEEEEEC-----CCeEEEeeEEEEecCcCCCCCCCCccccCeeec-C
Q 008860 287 DIRDFVAEQMSLR-GIEFHTEESPQAILKSTDGSLSVKTN-----KGTVDGFSHVMFATGRRPNTKNLGLEKVGVKMT-K 359 (551)
Q Consensus 287 ~~~~~l~~~l~~~-Gv~i~~~~~v~~i~~~~~~~~~V~~~-----~G~~i~~d~vi~a~G~~p~~~~l~l~~~gl~~~-~ 359 (551)
.+.+.+.+.+++. |++++++++|++|+..+++...|.+. +..++.++.|++..|-..-. + +..+|++-. .
T Consensus 182 ~LTr~l~~~l~~~~~~~~~~~~eV~~i~r~~dg~W~v~~~~~~~~~~~~v~a~FVfvGAGG~aL~-L--Lqksgi~e~~g 258 (488)
T PF06039_consen 182 ALTRQLVEYLQKQKGFELHLNHEVTDIKRNGDGRWEVKVKDLKTGEKREVRAKFVFVGAGGGALP-L--LQKSGIPEGKG 258 (488)
T ss_pred HHHHHHHHHHHhCCCcEEEecCEeCeeEECCCCCEEEEEEecCCCCeEEEECCEEEECCchHhHH-H--HHHcCChhhcc
Confidence 4566677777777 99999999999999988875666653 23478999999999986533 2 566676422 2
Q ss_pred CCCeEeC-CCCCCCCC--------cEEEeCcCCC
Q 008860 360 NGAIEVD-EYSGTAVP--------SIWAVGDVTD 384 (551)
Q Consensus 360 ~G~i~vd-~~~~t~~~--------~vya~GD~~~ 384 (551)
-|+..|. .++++..| -||..-.+-.
T Consensus 259 yggfPVsG~fl~~~n~~vv~~H~aKVYgka~vGa 292 (488)
T PF06039_consen 259 YGGFPVSGQFLRCKNPEVVAQHNAKVYGKASVGA 292 (488)
T ss_pred cCCCcccceEEecCCHHHHHHhcceeeeeCCCCC
Confidence 2333333 45666444 3676555433
|
The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process |
| >PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria | Back alignment and domain information |
|---|
Probab=98.00 E-value=6e-05 Score=76.36 Aligned_cols=94 Identities=17% Similarity=0.221 Sum_probs=69.1
Q ss_pred eEEEEcCcHHHHHHHHHHHhCCCeEEEEe-ecCccCC-------------------------------------------
Q 008860 247 KIAIVGGGYIALEFAGIFSGLTSEVHVFI-RQKKVLR------------------------------------------- 282 (551)
Q Consensus 247 ~vvViG~G~~g~e~a~~l~~~g~~Vtlv~-~~~~~l~------------------------------------------- 282 (551)
.|+|||||..|+|+|..+++.|.+|.++. ..+.+..
T Consensus 1 DViVVGgG~AG~eAA~aaAr~G~~V~Lit~~~d~i~~~~Cnpsigg~~kg~L~~Eidalgg~m~~~aD~~~i~~~~lN~s 80 (392)
T PF01134_consen 1 DVIVVGGGHAGCEAALAAARMGAKVLLITHNTDTIGEMSCNPSIGGIAKGHLVREIDALGGLMGRAADETGIHFRMLNRS 80 (392)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT--EEEEES-GGGTT--SSSSEEESTTHHHHHHHHHHTT-SHHHHHHHHEEEEEEESTT
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEeecccccccccchhhhccccccchhHHHhhhhhHHHHHHhHhhhhhhccccc
Confidence 48999999999999999999999999994 3232210
Q ss_pred ----------CCC-HHHHHHHHHHHHh-cCcEEEcCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCc
Q 008860 283 ----------GFD-EDIRDFVAEQMSL-RGIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGR 341 (551)
Q Consensus 283 ----------~~~-~~~~~~l~~~l~~-~Gv~i~~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~ 341 (551)
..| ..+.+.+.+.+++ .+++++ ..+|+++..+++.+..|.+.+|+.+.+|.||+|||.
T Consensus 81 kGpav~a~r~qvDr~~y~~~~~~~l~~~~nl~i~-~~~V~~l~~e~~~v~GV~~~~g~~~~a~~vVlaTGt 150 (392)
T PF01134_consen 81 KGPAVHALRAQVDRDKYSRAMREKLESHPNLTII-QGEVTDLIVENGKVKGVVTKDGEEIEADAVVLATGT 150 (392)
T ss_dssp S-GGCTEEEEEE-HHHHHHHHHHHHHTSTTEEEE-ES-EEEEEECTTEEEEEEETTSEEEEECEEEE-TTT
T ss_pred CCCCccchHhhccHHHHHHHHHHHHhcCCCeEEE-EcccceEEecCCeEEEEEeCCCCEEecCEEEEeccc
Confidence 011 1233446666666 588887 558999998888778899999999999999999998
|
Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A. |
| >PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=98.00 E-value=2e-05 Score=89.81 Aligned_cols=93 Identities=23% Similarity=0.208 Sum_probs=73.5
Q ss_pred CCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccC-------CC--CCHHHHHHHHHHHHhcCcEEEcCcccEEEEE
Q 008860 244 KPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVL-------RG--FDEDIRDFVAEQMSLRGIEFHTEESPQAILK 314 (551)
Q Consensus 244 ~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l-------~~--~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~ 314 (551)
.+++|+|||+|+.|+.+|..|++.|.+|+++++.+.+. |. ++.++.+...+.+++.||++++|+.+-
T Consensus 305 ~gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~~GG~l~yGIP~~rlp~~vi~~~i~~l~~~Gv~f~~n~~vG---- 380 (944)
T PRK12779 305 VKPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHDLGGVLRYGIPEFRLPNQLIDDVVEKIKLLGGRFVKNFVVG---- 380 (944)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCCCCceEEccCCCCcChHHHHHHHHHHHHhhcCeEEEeEEec----
Confidence 47899999999999999999999999999999876432 22 466777777788999999999986441
Q ss_pred cCCceEEEEECCCeEEEeeEEEEecCcC-CCC
Q 008860 315 STDGSLSVKTNKGTVDGFSHVMFATGRR-PNT 345 (551)
Q Consensus 315 ~~~~~~~V~~~~G~~i~~d~vi~a~G~~-p~~ 345 (551)
..+++++.....+|.|++|||.. |..
T Consensus 381 -----~dit~~~l~~~~yDAV~LAtGA~~pr~ 407 (944)
T PRK12779 381 -----KTATLEDLKAAGFWKIFVGTGAGLPTF 407 (944)
T ss_pred -----cEEeHHHhccccCCEEEEeCCCCCCCc
Confidence 22555555556799999999995 543
|
|
| >KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=97.99 E-value=7.4e-06 Score=86.40 Aligned_cols=42 Identities=33% Similarity=0.494 Sum_probs=37.8
Q ss_pred CCccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCeec
Q 008860 71 YDFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCV 121 (551)
Q Consensus 71 ~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~~ 121 (551)
..++|+|||||+|||+||.+|.+.|++|+|+|+ ++.+||...
T Consensus 14 ~~~~VIVIGAGiaGLsAArqL~~~G~~V~VLEA---------RdRvGGRI~ 55 (501)
T KOG0029|consen 14 KKKKVIVIGAGLAGLSAARQLQDFGFDVLVLEA---------RDRVGGRIY 55 (501)
T ss_pred CCCcEEEECCcHHHHHHHHHHHHcCCceEEEec---------cCCcCceeE
Confidence 357999999999999999999999999999994 788888863
|
|
| >PRK07236 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.98 E-value=9.2e-05 Score=76.73 Aligned_cols=32 Identities=25% Similarity=0.271 Sum_probs=30.5
Q ss_pred CccEEEECCChHHHHHHHHHHhCCCcEEEEcc
Q 008860 72 DFDLFTIGAGSGGVRASRFAANFGASVAICEL 103 (551)
Q Consensus 72 ~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~ 103 (551)
.+||+|||||++|+++|..|++.|++|+|+|+
T Consensus 6 ~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~ 37 (386)
T PRK07236 6 GPRAVVIGGSLGGLFAALLLRRAGWDVDVFER 37 (386)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCCEEEEec
Confidence 47999999999999999999999999999994
|
|
| >COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.97 E-value=2.1e-05 Score=80.81 Aligned_cols=32 Identities=34% Similarity=0.588 Sum_probs=30.4
Q ss_pred CCccEEEECCChHHHHHHHHHHhCCCcEEEEc
Q 008860 71 YDFDLFTIGAGSGGVRASRFAANFGASVAICE 102 (551)
Q Consensus 71 ~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE 102 (551)
..|||+|||||.||+.||..++|.|.+++|+.
T Consensus 3 ~~~DVIVIGgGHAG~EAA~AaARmG~ktlLlT 34 (621)
T COG0445 3 KEYDVIVIGGGHAGVEAALAAARMGAKTLLLT 34 (621)
T ss_pred CCCceEEECCCccchHHHHhhhccCCeEEEEE
Confidence 35999999999999999999999999999998
|
|
| >PRK10262 thioredoxin reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.00012 Score=73.85 Aligned_cols=99 Identities=13% Similarity=0.094 Sum_probs=72.3
Q ss_pred CCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCc---c--------CCC-----CCHHHHHHHHHHHHhcCcEEEcCcc
Q 008860 245 PEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKK---V--------LRG-----FDEDIRDFVAEQMSLRGIEFHTEES 308 (551)
Q Consensus 245 ~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~---~--------l~~-----~~~~~~~~l~~~l~~~Gv~i~~~~~ 308 (551)
.++|+|||+|+.|+.+|..+.+.|.++.+++.... + ++. ..+++.+.+.+.....++++..+ .
T Consensus 6 ~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 84 (321)
T PRK10262 6 HSKLLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQLTTTTEVENWPGDPNDLTGPLLMERMHEHATKFETEIIFD-H 84 (321)
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCCeEEEEeecCCCceecCceECCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEee-E
Confidence 57899999999999999999999999988864321 0 011 12344666777777788888776 5
Q ss_pred cEEEEEcCCceEEEEECCCeEEEeeEEEEecCcCCCCC
Q 008860 309 PQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNTK 346 (551)
Q Consensus 309 v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~~~ 346 (551)
+..++..++. +.+...++ .+.+|.||+|+|..|+..
T Consensus 85 v~~v~~~~~~-~~v~~~~~-~~~~d~vilAtG~~~~~~ 120 (321)
T PRK10262 85 INKVDLQNRP-FRLTGDSG-EYTCDALIIATGASARYL 120 (321)
T ss_pred EEEEEecCCe-EEEEecCC-EEEECEEEECCCCCCCCC
Confidence 6777765443 55655444 589999999999998653
|
|
| >PLN02463 lycopene beta cyclase | Back alignment and domain information |
|---|
Probab=97.97 E-value=5.5e-05 Score=79.30 Aligned_cols=97 Identities=20% Similarity=0.239 Sum_probs=75.0
Q ss_pred CeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccC-CC-C---------------------------------------
Q 008860 246 EKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVL-RG-F--------------------------------------- 284 (551)
Q Consensus 246 ~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l-~~-~--------------------------------------- 284 (551)
-.|+|||+|+.|+.+|..|++.|.+|.++++.+... +. .
T Consensus 29 ~DVvIVGaGpAGLalA~~La~~Gl~V~liE~~~~~~~p~~~g~w~~~l~~lgl~~~l~~~w~~~~v~~~~~~~~~~~~~y 108 (447)
T PLN02463 29 VDLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSPLSIWPNNYGVWVDEFEALGLLDCLDTTWPGAVVYIDDGKKKDLDRPY 108 (447)
T ss_pred ceEEEECCCHHHHHHHHHHHHCCCeEEEeccCccchhccccchHHHHHHHCCcHHHHHhhCCCcEEEEeCCCCccccCcc
Confidence 379999999999999999999999999999864211 10 0
Q ss_pred ----CHHHHHHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCcCCC
Q 008860 285 ----DEDIRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPN 344 (551)
Q Consensus 285 ----~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~ 344 (551)
..++.+.+.+.+.+.|++++ .++|++++.++++ ..|++.+|+++.+|.||.|+|..+.
T Consensus 109 ~~V~R~~L~~~Ll~~~~~~GV~~~-~~~V~~I~~~~~~-~~V~~~dG~~i~A~lVI~AdG~~s~ 170 (447)
T PLN02463 109 GRVNRKKLKSKMLERCIANGVQFH-QAKVKKVVHEESK-SLVVCDDGVKIQASLVLDATGFSRC 170 (447)
T ss_pred eeEEHHHHHHHHHHHHhhcCCEEE-eeEEEEEEEcCCe-EEEEECCCCEEEcCEEEECcCCCcC
Confidence 01122345556677899997 4689999887665 7788999988999999999998764
|
|
| >TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase | Back alignment and domain information |
|---|
Probab=97.96 E-value=9.2e-06 Score=82.71 Aligned_cols=42 Identities=29% Similarity=0.536 Sum_probs=37.5
Q ss_pred CccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCeecc
Q 008860 72 DFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVL 122 (551)
Q Consensus 72 ~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~~~ 122 (551)
++||+|||||++|+++|..|++.|.+|+|+|+ ...+||.|..
T Consensus 1 ~~DvvIIGaG~aGlsaA~~La~~G~~V~viEk---------~~~iGG~~~~ 42 (377)
T TIGR00031 1 MFDYIIVGAGLSGIVLANILAQLNKRVLVVEK---------RNHIGGNCYD 42 (377)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEec---------CCCCCCceee
Confidence 37999999999999999999999999999994 5678998754
|
The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae. |
| >TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit | Back alignment and domain information |
|---|
Probab=97.95 E-value=8.7e-05 Score=80.46 Aligned_cols=98 Identities=18% Similarity=0.187 Sum_probs=75.5
Q ss_pred CeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCcc-----------CCC----CCHHHHHHHHHHHHhcCcEEEcCcccE
Q 008860 246 EKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKV-----------LRG----FDEDIRDFVAEQMSLRGIEFHTEESPQ 310 (551)
Q Consensus 246 ~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~-----------l~~----~~~~~~~~l~~~l~~~Gv~i~~~~~v~ 310 (551)
-.|+|||||+.|+.+|..+++.|.+|+++++...- .+. ...++.+.+.+.+++.|++++ +++|.
T Consensus 5 yDVvIIGgGpAGL~AA~~lar~g~~V~liE~~~~GG~~~~~~~i~~~pg~~~~~~~~l~~~l~~~~~~~gv~~~-~~~V~ 83 (555)
T TIGR03143 5 YDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKDDFGGQITITSEVVNYPGILNTTGPELMQEMRQQAQDFGVKFL-QAEVL 83 (555)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCceEEeccccccCCCCcCCCHHHHHHHHHHHHHHcCCEEe-ccEEE
Confidence 46999999999999999999999999999975310 011 124566777778888899986 56888
Q ss_pred EEEEcCCceEEEEECCCeEEEeeEEEEecCcCCCCC
Q 008860 311 AILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNTK 346 (551)
Q Consensus 311 ~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~~~ 346 (551)
.+..+++. ..|.+.+| .+.+|.+|+|||.+|...
T Consensus 84 ~i~~~~~~-~~V~~~~g-~~~a~~lVlATGa~p~~~ 117 (555)
T TIGR03143 84 DVDFDGDI-KTIKTARG-DYKTLAVLIATGASPRKL 117 (555)
T ss_pred EEEecCCE-EEEEecCC-EEEEeEEEECCCCccCCC
Confidence 88765433 55777666 489999999999998764
|
This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140). |
| >PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=97.93 E-value=6.8e-05 Score=77.39 Aligned_cols=98 Identities=14% Similarity=0.193 Sum_probs=71.7
Q ss_pred CeEEEEcCcHHHHHHHHHHHhCC--CeEEEEeecCccC---CCCC---------HHHHH-HHHHHHHhcCcEEEcCcccE
Q 008860 246 EKIAIVGGGYIALEFAGIFSGLT--SEVHVFIRQKKVL---RGFD---------EDIRD-FVAEQMSLRGIEFHTEESPQ 310 (551)
Q Consensus 246 ~~vvViG~G~~g~e~a~~l~~~g--~~Vtlv~~~~~~l---~~~~---------~~~~~-~l~~~l~~~Gv~i~~~~~v~ 310 (551)
++++|||+|+.|+.+|..|++.+ .+|+++.+.+... +.+. .++.. ...+.+++.|++++.+++|+
T Consensus 3 ~~vvIiG~G~AG~~~a~~lr~~~~~~~Itvi~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~V~ 82 (377)
T PRK04965 3 NGIVIIGSGFAARQLVKNIRKQDAHIPITLITADSGDEYNKPDLSHVFSQGQRADDLTRQSAGEFAEQFNLRLFPHTWVT 82 (377)
T ss_pred CCEEEECCcHHHHHHHHHHHhhCcCCCEEEEeCCCCCCcCcCcCcHHHhCCCCHHHhhcCCHHHHHHhCCCEEECCCEEE
Confidence 58999999999999999998864 5799998766421 1111 11111 13355677899999999999
Q ss_pred EEEEcCCceEEEEECCCeEEEeeEEEEecCcCCCCCC
Q 008860 311 AILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNTKN 347 (551)
Q Consensus 311 ~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~~~~ 347 (551)
+++.+.. .|.+ +++.+.+|.+|+|||..|....
T Consensus 83 ~id~~~~---~v~~-~~~~~~yd~LVlATG~~~~~p~ 115 (377)
T PRK04965 83 DIDAEAQ---VVKS-QGNQWQYDKLVLATGASAFVPP 115 (377)
T ss_pred EEECCCC---EEEE-CCeEEeCCEEEECCCCCCCCCC
Confidence 9976543 2444 5667999999999999987543
|
|
| >TIGR01316 gltA glutamate synthase (NADPH), homotetrameric | Back alignment and domain information |
|---|
Probab=97.91 E-value=2.6e-05 Score=82.36 Aligned_cols=92 Identities=18% Similarity=0.222 Sum_probs=70.4
Q ss_pred CCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccC-------C--CCCHHHHHHHHHHHHhcCcEEEcCcccEEEEE
Q 008860 244 KPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVL-------R--GFDEDIRDFVAEQMSLRGIEFHTEESPQAILK 314 (551)
Q Consensus 244 ~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l-------~--~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~ 314 (551)
.+++|+|||+|+.|+++|..|++.|.+|+++++.+.+. + .++.++.+...+.+++.||+++.++.+.
T Consensus 132 ~~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~~~~~GG~l~~gip~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~---- 207 (449)
T TIGR01316 132 THKKVAVIGAGPAGLACASELAKAGHSVTVFEALHKPGGVVTYGIPEFRLPKEIVVTEIKTLKKLGVTFRMNFLVG---- 207 (449)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCcEeeecCCCccCCHHHHHHHHHHHHhCCcEEEeCCccC----
Confidence 35799999999999999999999999999999876441 2 2566777777788899999999997541
Q ss_pred cCCceEEEEECCCeEEEeeEEEEecCc-CCCC
Q 008860 315 STDGSLSVKTNKGTVDGFSHVMFATGR-RPNT 345 (551)
Q Consensus 315 ~~~~~~~V~~~~G~~i~~d~vi~a~G~-~p~~ 345 (551)
..+.+.+. ...+|.||+|||. .|..
T Consensus 208 -----~~v~~~~~-~~~yd~viiAtGa~~p~~ 233 (449)
T TIGR01316 208 -----KTATLEEL-FSQYDAVFIGTGAGLPKL 233 (449)
T ss_pred -----CcCCHHHH-HhhCCEEEEeCCCCCCCc
Confidence 11333333 2468999999998 5654
|
This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH. |
| >PRK09853 putative selenate reductase subunit YgfK; Provisional | Back alignment and domain information |
|---|
Probab=97.91 E-value=5.5e-05 Score=85.29 Aligned_cols=91 Identities=22% Similarity=0.329 Sum_probs=69.0
Q ss_pred CCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccC-------CC--CCHHHHHHHHHHHHhcCcEEEcCcccEEEEE
Q 008860 244 KPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVL-------RG--FDEDIRDFVAEQMSLRGIEFHTEESPQAILK 314 (551)
Q Consensus 244 ~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l-------~~--~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~ 314 (551)
.+++|+|||+|+.|+.+|..|++.|.+|+++++.+.+. |. ++.+....-.+.+++.||++++++.+ .+
T Consensus 538 tgKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~~~GG~lr~~IP~~Rlp~evL~~die~l~~~GVe~~~gt~V-di-- 614 (1019)
T PRK09853 538 SRKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREENAGGVVKNIIPQFRIPAELIQHDIEFVKAHGVKFEFGCSP-DL-- 614 (1019)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCeEEEEecccccCcceeeecccccccHHHHHHHHHHHHHcCCEEEeCcee-EE--
Confidence 46799999999999999999999999999999876532 22 34455555567788899999999765 22
Q ss_pred cCCceEEEEECCCeEEEeeEEEEecCcCCCC
Q 008860 315 STDGSLSVKTNKGTVDGFSHVMFATGRRPNT 345 (551)
Q Consensus 315 ~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~~ 345 (551)
.+.+.....+|.||+|||.++..
T Consensus 615 --------~le~L~~~gYDaVILATGA~~~~ 637 (1019)
T PRK09853 615 --------TVEQLKNEGYDYVVVAIGADKNG 637 (1019)
T ss_pred --------EhhhheeccCCEEEECcCCCCCC
Confidence 12223345689999999998643
|
|
| >PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional | Back alignment and domain information |
|---|
Probab=97.90 E-value=2.7e-05 Score=82.55 Aligned_cols=90 Identities=22% Similarity=0.319 Sum_probs=70.7
Q ss_pred CCCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccC-------CC--CCHHHHHHHHHHHHhcCcEEEcCcccEEEE
Q 008860 243 SKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVL-------RG--FDEDIRDFVAEQMSLRGIEFHTEESPQAIL 313 (551)
Q Consensus 243 ~~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l-------~~--~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~ 313 (551)
..+++|+|||+|+.|+++|..|++.|.+|+++++.+.+. +. .+.++.....+.+++.|+++++++.+..
T Consensus 138 ~~~~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~~~~gG~l~~gip~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~-- 215 (457)
T PRK11749 138 KTGKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARDKAGGLLRYGIPEFRLPKDIVDREVERLLKLGVEIRTNTEVGR-- 215 (457)
T ss_pred cCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCcEeeccCCCccCCHHHHHHHHHHHHHcCCEEEeCCEECC--
Confidence 457899999999999999999999999999999887642 22 4567777788889999999999876521
Q ss_pred EcCCceEEEEECCCeEEEeeEEEEecCcC
Q 008860 314 KSTDGSLSVKTNKGTVDGFSHVMFATGRR 342 (551)
Q Consensus 314 ~~~~~~~~V~~~~G~~i~~d~vi~a~G~~ 342 (551)
.+.+.+.. +.+|.||+|||..
T Consensus 216 -------~v~~~~~~-~~~d~vvlAtGa~ 236 (457)
T PRK11749 216 -------DITLDELR-AGYDAVFIGTGAG 236 (457)
T ss_pred -------ccCHHHHH-hhCCEEEEccCCC
Confidence 12222333 7799999999986
|
|
| >KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown] | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.0001 Score=70.50 Aligned_cols=69 Identities=16% Similarity=0.193 Sum_probs=48.5
Q ss_pred HHHHHHHHHHhcCcEEEcCcccEEEEEcCCc----eEEEEECCCeEEEeeEEEEecCcCCCCCCCCccccCeeecC
Q 008860 288 IRDFVAEQMSLRGIEFHTEESPQAILKSTDG----SLSVKTNKGTVDGFSHVMFATGRRPNTKNLGLEKVGVKMTK 359 (551)
Q Consensus 288 ~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~----~~~V~~~~G~~i~~d~vi~a~G~~p~~~~l~l~~~gl~~~~ 359 (551)
+...+.+.++..|.+++++-+++.+..+... .+.|.-..++++.+..+|-|+|.....- .+.+|++.++
T Consensus 198 v~ls~~edF~~~gg~i~~n~~l~g~~~n~~~~~~Ypivv~ngk~ee~r~~~~vtc~gl~sdr~---aa~sgc~~dP 270 (453)
T KOG2665|consen 198 VTLSFGEDFDFMGGRIYTNFRLQGIAQNKEATFSYPIVVLNGKGEEKRTKNVVTCAGLQSDRC---AALSGCELDP 270 (453)
T ss_pred HHHHHHHHHHHhcccccccceeccchhccCCCCCCceEEecCccceeEEeEEEEeccccHhHH---HHHhCCCCCC
Confidence 3445556688999999999999999876543 2334444467899999999999876442 3445565554
|
|
| >COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.86 E-value=1.8e-05 Score=74.18 Aligned_cols=40 Identities=30% Similarity=0.430 Sum_probs=35.3
Q ss_pred ccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCeec
Q 008860 73 FDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCV 121 (551)
Q Consensus 73 ~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~~ 121 (551)
.+|+|||+|++|++||..|+..|.+|+++|| ...+||...
T Consensus 2 ~siaIVGaGiAGl~aA~~L~~aG~~vtV~eK---------g~GvGGRlA 41 (331)
T COG3380 2 PSIAIVGAGIAGLAAAYALREAGREVTVFEK---------GRGVGGRLA 41 (331)
T ss_pred CcEEEEccchHHHHHHHHHHhcCcEEEEEEc---------CCCcccchh
Confidence 3699999999999999999999999999995 566777754
|
|
| >COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.0008 Score=66.66 Aligned_cols=99 Identities=22% Similarity=0.259 Sum_probs=76.1
Q ss_pred CeEEEEcCcHHHHHHHHHHHhCCCe-EEEEeecCcc-----------CCC-----CCHHHHHHHHHHHHhcCcEEEcCcc
Q 008860 246 EKIAIVGGGYIALEFAGIFSGLTSE-VHVFIRQKKV-----------LRG-----FDEDIRDFVAEQMSLRGIEFHTEES 308 (551)
Q Consensus 246 ~~vvViG~G~~g~e~a~~l~~~g~~-Vtlv~~~~~~-----------l~~-----~~~~~~~~l~~~l~~~Gv~i~~~~~ 308 (551)
-.|+|||+|+.|+-.|-++.+.+.+ +.+++....- .|. ..+++.+.+.+..+..|+++.. ..
T Consensus 4 ~DviIIG~GPAGl~AAiya~r~~l~~~li~~~~~~gg~~~~~~~venypg~~~~~~g~~L~~~~~~~a~~~~~~~~~-~~ 82 (305)
T COG0492 4 YDVIIIGGGPAGLTAAIYAARAGLKVVLILEGGEPGGQLTKTTDVENYPGFPGGILGPELMEQMKEQAEKFGVEIVE-DE 82 (305)
T ss_pred eeEEEECCCHHHHHHHHHHHHcCCCcEEEEecCCcCCccccceeecCCCCCccCCchHHHHHHHHHHHhhcCeEEEE-EE
Confidence 3689999999999999999999987 5555542110 122 3456777777888888999988 57
Q ss_pred cEEEEEcCCceEEEEECCCeEEEeeEEEEecCcCCCCCC
Q 008860 309 PQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNTKN 347 (551)
Q Consensus 309 v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~~~~ 347 (551)
|.+++..++ ...|.+.+|+ +.++.||+|||..+....
T Consensus 83 v~~v~~~~~-~F~v~t~~~~-~~ak~vIiAtG~~~~~~~ 119 (305)
T COG0492 83 VEKVELEGG-PFKVKTDKGT-YEAKAVIIATGAGARKLG 119 (305)
T ss_pred EEEEeecCc-eEEEEECCCe-EEEeEEEECcCCcccCCC
Confidence 888876554 4789999998 999999999999876643
|
|
| >TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.00013 Score=77.08 Aligned_cols=95 Identities=18% Similarity=0.293 Sum_probs=68.4
Q ss_pred eEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCCC------------------------------------CC-----
Q 008860 247 KIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRG------------------------------------FD----- 285 (551)
Q Consensus 247 ~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~~------------------------------------~~----- 285 (551)
.++|||+|+.|+.+|..++++|.+|+++++. .+-.. ++
T Consensus 4 DvvVIG~GpaG~~aA~~aa~~G~~V~lie~~-~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~~ 82 (446)
T TIGR01424 4 DLFVIGAGSGGVRAARLAANHGAKVAIAEEP-RVGGTCVIRGCVPKKLMVYGSTFGGEFEDAAGYGWTVGKARFDWKKLL 82 (446)
T ss_pred cEEEECCCHHHHHHHHHHHhCCCcEEEEecC-ccCceeecCCcCchHHHHHHHHHHHHHhhhHhcCcCCCCCCcCHHHHH
Confidence 5899999999999999999999999999973 21100 00
Q ss_pred -------HHHHHHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCcCCCCCC
Q 008860 286 -------EDIRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNTKN 347 (551)
Q Consensus 286 -------~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~~~~ 347 (551)
.++.+.+++.+++.||+++.+ ++..+.. +. +.+. .+|+++.+|.||+|||.+|....
T Consensus 83 ~~~~~~~~~~~~~~~~~l~~~gV~~~~g-~~~~v~~--~~-v~v~-~~g~~~~~d~lIiATGs~p~~p~ 146 (446)
T TIGR01424 83 QKKDDEIARLSGLYKRLLANAGVELLEG-RARLVGP--NT-VEVL-QDGTTYTAKKILIAVGGRPQKPN 146 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCcEEEEE-EEEEecC--CE-EEEe-cCCeEEEcCEEEEecCCcCCCCC
Confidence 012334556677889999877 5655532 22 4443 46778999999999999986543
|
The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria. |
| >TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial | Back alignment and domain information |
|---|
Probab=97.82 E-value=5.6e-05 Score=80.11 Aligned_cols=92 Identities=21% Similarity=0.334 Sum_probs=70.6
Q ss_pred CCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccC-------C--CCCHHHHHHHHHHHHhcCcEEEcCcccEEEEE
Q 008860 244 KPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVL-------R--GFDEDIRDFVAEQMSLRGIEFHTEESPQAILK 314 (551)
Q Consensus 244 ~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l-------~--~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~ 314 (551)
.+++|+|||+|+.|+.+|..|++.|.+|+++++.+.+. + .++.++.+...+.+++.|++++.++.+..-
T Consensus 140 ~~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~Gv~~~~~~~v~~~-- 217 (467)
T TIGR01318 140 TGKRVAVIGAGPAGLACADILARAGVQVVVFDRHPEIGGLLTFGIPSFKLDKAVLSRRREIFTAMGIEFHLNCEVGRD-- 217 (467)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCceeeecCccccCCHHHHHHHHHHHHHCCCEEECCCEeCCc--
Confidence 46799999999999999999999999999999877541 2 246667677778899999999999765221
Q ss_pred cCCceEEEEECCCeEEEeeEEEEecCcCCCC
Q 008860 315 STDGSLSVKTNKGTVDGFSHVMFATGRRPNT 345 (551)
Q Consensus 315 ~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~~ 345 (551)
+.+.+ ....+|.||+|+|..+..
T Consensus 218 -------~~~~~-~~~~~D~vilAtGa~~~~ 240 (467)
T TIGR01318 218 -------ISLDD-LLEDYDAVFLGVGTYRSM 240 (467)
T ss_pred -------cCHHH-HHhcCCEEEEEeCCCCCC
Confidence 11111 124689999999998753
|
This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli. |
| >PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes [] | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.00026 Score=75.85 Aligned_cols=136 Identities=20% Similarity=0.291 Sum_probs=85.6
Q ss_pred CeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCCC-------------------------------C----------
Q 008860 246 EKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRG-------------------------------F---------- 284 (551)
Q Consensus 246 ~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~~-------------------------------~---------- 284 (551)
|+|+|||+|++|+-.+..|.+.|.+++++++.+.+... +
T Consensus 2 krVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~iGG~W~~~~~~~~g~~~~y~sl~~n~sk~~~~fsdfp~p~~~p~f~ 81 (531)
T PF00743_consen 2 KRVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDDIGGLWRYTENPEDGRSSVYDSLHTNTSKEMMAFSDFPFPEDYPDFP 81 (531)
T ss_dssp -EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSSSSGGGCHSTTCCCSEGGGSTT-B-SS-GGGSCCTTS-HCCCCSSSE
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCeEEecCCCCCccCeeCCcCCCCccccccceEEeeCchHhcCCCcCCCCCCCCCC
Confidence 79999999999999999999999999999987653110 1
Q ss_pred -CHHHHHHHHHHHHhcCc--EEEcCcccEEEEEcCC----ceEEEEECC-Ce--EEEeeEEEEecCcC--CCCCCCCccc
Q 008860 285 -DEDIRDFVAEQMSLRGI--EFHTEESPQAILKSTD----GSLSVKTNK-GT--VDGFSHVMFATGRR--PNTKNLGLEK 352 (551)
Q Consensus 285 -~~~~~~~l~~~l~~~Gv--~i~~~~~v~~i~~~~~----~~~~V~~~~-G~--~i~~d~vi~a~G~~--p~~~~l~l~~ 352 (551)
..++.+.++.+.+..++ .+.++++|++++..++ +...|++.+ |+ +..+|.|++|+|.. |+... -.-
T Consensus 82 ~~~~v~~Yl~~Ya~~f~L~~~I~fnt~V~~v~~~~d~~~~~~W~V~~~~~g~~~~~~fD~VvvatG~~~~P~~P~--~~~ 159 (531)
T PF00743_consen 82 SHSEVLEYLESYAEHFGLRKHIRFNTEVVSVERDPDFSATGKWEVTTENDGKEETEEFDAVVVATGHFSKPNIPE--PSF 159 (531)
T ss_dssp BHHHHHHHHHHHHHHTTGGGGEETSEEEEEEEEETTTT-ETEEEEEETTTTEEEEEEECEEEEEE-SSSCESB-------
T ss_pred CHHHHHHHHHHHHhhhCCcceEEEccEEeEeeeccccCCCceEEEEeecCCeEEEEEeCeEEEcCCCcCCCCCCh--hhh
Confidence 13455667777776666 5899999999987543 346777754 43 35689999999985 33221 001
Q ss_pred cCeeecCCCCeEeCCCCCC----CCCcEEEeCcCCC
Q 008860 353 VGVKMTKNGAIEVDEYSGT----AVPSIWAVGDVTD 384 (551)
Q Consensus 353 ~gl~~~~~G~i~vd~~~~t----~~~~vya~GD~~~ 384 (551)
.|++.- +|.+.-....+. ..++|-++|-..+
T Consensus 160 ~G~e~F-~G~i~HS~~yr~~~~f~gKrVlVVG~g~S 194 (531)
T PF00743_consen 160 PGLEKF-KGEIIHSKDYRDPEPFKGKRVLVVGGGNS 194 (531)
T ss_dssp CTGGGH-CSEEEEGGG--TGGGGTTSEEEEESSSHH
T ss_pred hhhhcC-CeeEEccccCcChhhcCCCEEEEEeCCHh
Confidence 233211 355554444432 3577888886544
|
Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A .... |
| >PLN02576 protoporphyrinogen oxidase | Back alignment and domain information |
|---|
Probab=97.81 E-value=2.3e-05 Score=84.06 Aligned_cols=41 Identities=32% Similarity=0.450 Sum_probs=37.1
Q ss_pred CccEEEECCChHHHHHHHHHHhC-CCcEEEEccCCCCCCCCCCCCCCCeec
Q 008860 72 DFDLFTIGAGSGGVRASRFAANF-GASVAICELPFSTISSETTGGVGGTCV 121 (551)
Q Consensus 72 ~~dVvIIGgG~aGl~aA~~l~~~-G~~V~liE~~~~~~~~~~~~~~GG~~~ 121 (551)
++||+|||||++||+||++|.+. |++|+|+|+ ...+||.+.
T Consensus 12 ~~~v~IIGaGisGL~aA~~L~~~~g~~v~vlEa---------~~rvGGr~~ 53 (496)
T PLN02576 12 SKDVAVVGAGVSGLAAAYALASKHGVNVLVTEA---------RDRVGGNIT 53 (496)
T ss_pred CCCEEEECcCHHHHHHHHHHHHhcCCCEEEEec---------CCCCCCcee
Confidence 47999999999999999999999 999999994 677898864
|
|
| >PRK06753 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.00022 Score=73.45 Aligned_cols=98 Identities=22% Similarity=0.319 Sum_probs=72.8
Q ss_pred eEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCCC-----CCHHH---------------------------------
Q 008860 247 KIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRG-----FDEDI--------------------------------- 288 (551)
Q Consensus 247 ~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~~-----~~~~~--------------------------------- 288 (551)
+|+|||+|+.|+-+|..|++.|.+|+++++.+.+... +.+..
T Consensus 2 ~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~g~gi~l~~~~~~~L~~~gl~~~~~~~~~~~~~~~~~~~~g~~~ 81 (373)
T PRK06753 2 KIAIIGAGIGGLTAAALLQEQGHEVKVFEKNESVKEVGAGIGIGDNVIKKLGNHDLAKGIKNAGQILSTMNLLDDKGTLL 81 (373)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcccccccceeeChHHHHHHHhcChHHHHHhcCCcccceeEEcCCCCEE
Confidence 6899999999999999999999999999987642100 00000
Q ss_pred ---------------HHHHHHHHHhc--CcEEEcCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCcCCCC
Q 008860 289 ---------------RDFVAEQMSLR--GIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNT 345 (551)
Q Consensus 289 ---------------~~~l~~~l~~~--Gv~i~~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~~ 345 (551)
...+.+.|.+. +.+++++++|++++.++++ +.|++.+|+++.+|.||-|-|.++..
T Consensus 82 ~~~~~~~~~~~~~i~R~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~-v~v~~~~g~~~~~~~vigadG~~S~v 154 (373)
T PRK06753 82 NKVKLKSNTLNVTLHRQTLIDIIKSYVKEDAIFTGKEVTKIENETDK-VTIHFADGESEAFDLCIGADGIHSKV 154 (373)
T ss_pred eecccccCCccccccHHHHHHHHHHhCCCceEEECCEEEEEEecCCc-EEEEECCCCEEecCEEEECCCcchHH
Confidence 01122333222 4578999999999877666 78889999999999999999987654
|
|
| >PLN02268 probable polyamine oxidase | Back alignment and domain information |
|---|
Probab=97.79 E-value=2.4e-05 Score=82.44 Aligned_cols=48 Identities=17% Similarity=0.309 Sum_probs=38.9
Q ss_pred HHHHHHhcCcEEEcCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCc
Q 008860 292 VAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGR 341 (551)
Q Consensus 292 l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~ 341 (551)
+.+.|. .++++++++.|++|...+++ +.|++.+|+++.+|.||+|+..
T Consensus 203 l~~~l~-~~~~i~~~~~V~~i~~~~~~-v~v~~~~g~~~~ad~VIva~P~ 250 (435)
T PLN02268 203 VINTLA-KGLDIRLNHRVTKIVRRYNG-VKVTVEDGTTFVADAAIIAVPL 250 (435)
T ss_pred HHHHHh-ccCceeCCCeeEEEEEcCCc-EEEEECCCcEEEcCEEEEecCH
Confidence 334443 36789999999999987777 7788889988999999999754
|
|
| >PRK11883 protoporphyrinogen oxidase; Reviewed | Back alignment and domain information |
|---|
Probab=97.79 E-value=2.3e-05 Score=82.95 Aligned_cols=53 Identities=17% Similarity=0.162 Sum_probs=39.5
Q ss_pred HHHHHHHHHHhcCc-EEEcCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCc
Q 008860 288 IRDFVAEQMSLRGI-EFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGR 341 (551)
Q Consensus 288 ~~~~l~~~l~~~Gv-~i~~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~ 341 (551)
+...+.+..+..+. +|+++++|++|+.++++ +.|.+.+|+++.+|.||+|+..
T Consensus 220 ~~~l~~~l~~~l~~~~i~~~~~V~~i~~~~~~-~~v~~~~g~~~~~d~vI~a~p~ 273 (451)
T PRK11883 220 LQSLIEALEEKLPAGTIHKGTPVTKIDKSGDG-YEIVLSNGGEIEADAVIVAVPH 273 (451)
T ss_pred HHHHHHHHHHhCcCCeEEeCCEEEEEEEcCCe-EEEEECCCCEEEcCEEEECCCH
Confidence 33333343333333 89999999999987766 7788889989999999998764
|
|
| >PRK07845 flavoprotein disulfide reductase; Reviewed | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.0001 Score=78.27 Aligned_cols=98 Identities=22% Similarity=0.274 Sum_probs=69.0
Q ss_pred CeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCc--------cCC--------------------CCC----------H-
Q 008860 246 EKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKK--------VLR--------------------GFD----------E- 286 (551)
Q Consensus 246 ~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~--------~l~--------------------~~~----------~- 286 (551)
++++|||+|+.|+++|..+.+.|.+|+++++... -.| +.. -
T Consensus 2 ~~vvviG~G~~G~~~a~~~~~~g~~v~~~e~~~~gG~c~~~gciPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~~ 81 (466)
T PRK07845 2 TRIVIIGGGPGGYEAALVAAQLGADVTVIERDGLGGAAVLTDCVPSKTLIATAEVRTELRRAAELGIRFIDDGEARVDLP 81 (466)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEEccCCCCcccccCCcchHHHHHHHHHHHHHHHHHhCCcccccCcccccCHH
Confidence 5799999999999999999999999999997540 000 000 0
Q ss_pred H-----------HHHHHHHHHHhcCcEEEcCcccEEEE--EcCCceEEEEECCCe--EEEeeEEEEecCcCCCC
Q 008860 287 D-----------IRDFVAEQMSLRGIEFHTEESPQAIL--KSTDGSLSVKTNKGT--VDGFSHVMFATGRRPNT 345 (551)
Q Consensus 287 ~-----------~~~~l~~~l~~~Gv~i~~~~~v~~i~--~~~~~~~~V~~~~G~--~i~~d~vi~a~G~~p~~ 345 (551)
. +.+.+.+.+++.||+++.+ ++..++ .+.+ .+.|.+.+|+ ++.+|.||+|||.+|..
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~g-~~~~~~~~~~~~-~v~V~~~~g~~~~~~~d~lViATGs~p~~ 153 (466)
T PRK07845 82 AVNARVKALAAAQSADIRARLEREGVRVIAG-RGRLIDPGLGPH-RVKVTTADGGEETLDADVVLIATGASPRI 153 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCEEEEE-EEEEeecccCCC-EEEEEeCCCceEEEecCEEEEcCCCCCCC
Confidence 0 0123445567789999888 344432 2223 3667777775 69999999999999864
|
|
| >TIGR00562 proto_IX_ox protoporphyrinogen oxidase | Back alignment and domain information |
|---|
Probab=97.78 E-value=2.5e-05 Score=83.09 Aligned_cols=40 Identities=5% Similarity=0.077 Sum_probs=34.8
Q ss_pred cEEEcCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCc
Q 008860 301 IEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGR 341 (551)
Q Consensus 301 v~i~~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~ 341 (551)
.+++++++|++|+.++++ +.|++.+|+++.+|.||+|+..
T Consensus 238 ~~i~~~~~V~~I~~~~~~-~~v~~~~g~~~~ad~VI~t~P~ 277 (462)
T TIGR00562 238 TKVYKGTKVTKLSHRGSN-YTLELDNGVTVETDSVVVTAPH 277 (462)
T ss_pred CeEEcCCeEEEEEecCCc-EEEEECCCcEEEcCEEEECCCH
Confidence 789999999999987766 7788888888999999998864
|
This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end. |
| >TIGR02733 desat_CrtD C-3',4' desaturase CrtD | Back alignment and domain information |
|---|
Probab=97.76 E-value=2.7e-05 Score=83.42 Aligned_cols=59 Identities=14% Similarity=-0.009 Sum_probs=47.0
Q ss_pred CCHHHHHHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEECCC-----eEEEeeEEEEecCcC
Q 008860 284 FDEDIRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTNKG-----TVDGFSHVMFATGRR 342 (551)
Q Consensus 284 ~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~G-----~~i~~d~vi~a~G~~ 342 (551)
--..+.+.+.+.+++.|++|+++++|++|..+++....|.+.++ +++.+|.||+++...
T Consensus 230 G~~~l~~aL~~~~~~~G~~i~~~~~V~~I~~~~~~~~gv~~~~~~~~~~~~~~ad~VI~~~~~~ 293 (492)
T TIGR02733 230 SMQTLSDRLVEALKRDGGNLLTGQRVTAIHTKGGRAGWVVVVDSRKQEDLNVKADDVVANLPPQ 293 (492)
T ss_pred cHHHHHHHHHHHHHhcCCEEeCCceEEEEEEeCCeEEEEEEecCCCCceEEEECCEEEECCCHH
Confidence 34568888999999999999999999999887664345555444 578999999998753
|
Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll. |
| >PRK12831 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=97.75 E-value=6.8e-05 Score=79.36 Aligned_cols=94 Identities=20% Similarity=0.316 Sum_probs=68.5
Q ss_pred CCCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccC-------CC--CCH-HHHHHHHHHHHhcCcEEEcCcccEEE
Q 008860 243 SKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVL-------RG--FDE-DIRDFVAEQMSLRGIEFHTEESPQAI 312 (551)
Q Consensus 243 ~~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l-------~~--~~~-~~~~~l~~~l~~~Gv~i~~~~~v~~i 312 (551)
..+++|+|||+|+.|+.+|..|++.|.+|+++++.+.+. +. ++. ++.....+.+++.|+++++++.+..
T Consensus 138 ~~~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~~gv~i~~~~~v~~- 216 (464)
T PRK12831 138 KKGKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALHEPGGVLVYGIPEFRLPKETVVKKEIENIKKLGVKIETNVVVGK- 216 (464)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCCeeeecCCCccCCccHHHHHHHHHHHHcCCEEEcCCEECC-
Confidence 346799999999999999999999999999999865431 11 222 2566666788899999999975421
Q ss_pred EEcCCceEEEEECCC-eEEEeeEEEEecCc-CCCC
Q 008860 313 LKSTDGSLSVKTNKG-TVDGFSHVMFATGR-RPNT 345 (551)
Q Consensus 313 ~~~~~~~~~V~~~~G-~~i~~d~vi~a~G~-~p~~ 345 (551)
.+.+.+. +.+.+|.||+|||. .|..
T Consensus 217 --------~v~~~~~~~~~~~d~viiAtGa~~~~~ 243 (464)
T PRK12831 217 --------TVTIDELLEEEGFDAVFIGSGAGLPKF 243 (464)
T ss_pred --------cCCHHHHHhccCCCEEEEeCCCCCCCC
Confidence 1222332 23569999999998 4654
|
|
| >COG3349 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.75 E-value=3e-05 Score=79.90 Aligned_cols=41 Identities=27% Similarity=0.373 Sum_probs=37.1
Q ss_pred ccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCeecc
Q 008860 73 FDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVL 122 (551)
Q Consensus 73 ~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~~~ 122 (551)
++|+|+|||.|||+||++|+++|++|+|+|. .+.+||.|..
T Consensus 1 ~rVai~GaG~AgL~~a~~La~~g~~vt~~ea---------~~~~GGk~~s 41 (485)
T COG3349 1 MRVAIAGAGLAGLAAAYELADAGYDVTLYEA---------RDRLGGKVAS 41 (485)
T ss_pred CeEEEEcccHHHHHHHHHHHhCCCceEEEec---------cCccCceeee
Confidence 3799999999999999999999999999993 7889998753
|
|
| >PLN02852 ferredoxin-NADP+ reductase | Back alignment and domain information |
|---|
Probab=97.74 E-value=8e-05 Score=78.48 Aligned_cols=91 Identities=14% Similarity=0.179 Sum_probs=66.1
Q ss_pred CCCeEEEEcCcHHHHHHHHHHHh--CCCeEEEEeecCccC--------CC--CCHHHHHHHHHHHHhcCcEEEcCcccEE
Q 008860 244 KPEKIAIVGGGYIALEFAGIFSG--LTSEVHVFIRQKKVL--------RG--FDEDIRDFVAEQMSLRGIEFHTEESPQA 311 (551)
Q Consensus 244 ~~~~vvViG~G~~g~e~a~~l~~--~g~~Vtlv~~~~~~l--------~~--~~~~~~~~l~~~l~~~Gv~i~~~~~v~~ 311 (551)
.+++|+|||+|+.|+.+|..|.+ .|.+|+++++.+.+. |. ....+...+.+.+++.||+++.|..+-
T Consensus 25 ~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pgGlvr~gvaP~~~~~k~v~~~~~~~~~~~~v~~~~nv~vg- 103 (491)
T PLN02852 25 EPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPFGLVRSGVAPDHPETKNVTNQFSRVATDDRVSFFGNVTLG- 103 (491)
T ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCcceEeeccCCCcchhHHHHHHHHHHHHHCCeEEEcCEEEC-
Confidence 46799999999999999999986 799999999988653 11 112334455667778899998875441
Q ss_pred EEEcCCceEEEEECCCeEEEeeEEEEecCcCCC
Q 008860 312 ILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPN 344 (551)
Q Consensus 312 i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~ 344 (551)
..+.+.+-. ..+|.||+|+|..+.
T Consensus 104 --------~dvtl~~L~-~~yDaVIlAtGa~~~ 127 (491)
T PLN02852 104 --------RDVSLSELR-DLYHVVVLAYGAESD 127 (491)
T ss_pred --------ccccHHHHh-hhCCEEEEecCCCCC
Confidence 113333332 468999999999863
|
|
| >PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00021 Score=75.85 Aligned_cols=97 Identities=18% Similarity=0.201 Sum_probs=68.4
Q ss_pred CeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCCC------CCHH--------------------------------
Q 008860 246 EKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRG------FDED-------------------------------- 287 (551)
Q Consensus 246 ~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~~------~~~~-------------------------------- 287 (551)
-.|+|||+|+.|+.+|..+.+.|.+|+++++.+.+... .+..
T Consensus 6 yDvvVIGaGpaG~~aA~~la~~G~~v~liE~~~~~GG~~~~~gcipsk~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 85 (461)
T PRK05249 6 YDLVVIGSGPAGEGAAMQAAKLGKRVAVIERYRNVGGGCTHTGTIPSKALREAVLRLIGFNQNPLYSSYRVKLRITFADL 85 (461)
T ss_pred ccEEEECCCHHHHHHHHHHHhCCCEEEEEeccccccccccccCCCCHHHHHHHHHHHHHHhhhhhhcccCCcCccCHHHH
Confidence 36999999999999999999999999999986443110 1100
Q ss_pred ----------HHHHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEECCCe--EEEeeEEEEecCcCCCCC
Q 008860 288 ----------IRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTNKGT--VDGFSHVMFATGRRPNTK 346 (551)
Q Consensus 288 ----------~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~G~--~i~~d~vi~a~G~~p~~~ 346 (551)
..+.+.+.+++.||+++.+. +..+. . +.+.|...+|+ ++.+|.||+|||.+|...
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~-~~~~~--~-~~~~v~~~~g~~~~~~~d~lviATGs~p~~p 152 (461)
T PRK05249 86 LARADHVINKQVEVRRGQYERNRVDLIQGR-ARFVD--P-HTVEVECPDGEVETLTADKIVIATGSRPYRP 152 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCEEEEEE-EEEec--C-CEEEEEeCCCceEEEEcCEEEEcCCCCCCCC
Confidence 01123345667899998873 33332 2 23667777774 689999999999998654
|
|
| >KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00084 Score=74.07 Aligned_cols=93 Identities=20% Similarity=0.257 Sum_probs=73.3
Q ss_pred CCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccC-------CC--CCHHHHHHHHHHHHhcCcEEEcCcccEEEEE
Q 008860 244 KPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVL-------RG--FDEDIRDFVAEQMSLRGIEFHTEESPQAILK 314 (551)
Q Consensus 244 ~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l-------~~--~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~ 314 (551)
.+++|.|||+|+.|+.+|..|.+.|..|++++|++++. |. +|..+.+.-.+.|.+.||+|++|++|-+-
T Consensus 1784 tg~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~ggll~ygipnmkldk~vv~rrv~ll~~egi~f~tn~eigk~-- 1861 (2142)
T KOG0399|consen 1784 TGKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRVGGLLMYGIPNMKLDKFVVQRRVDLLEQEGIRFVTNTEIGKH-- 1861 (2142)
T ss_pred cCcEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCcCceeeecCCccchhHHHHHHHHHHHHhhCceEEeecccccc--
Confidence 47899999999999999999999999999999999762 32 67788888888999999999999765321
Q ss_pred cCCceEEEEECCCeEEEeeEEEEecCcCCCCC
Q 008860 315 STDGSLSVKTNKGTVDGFSHVMFATGRRPNTK 346 (551)
Q Consensus 315 ~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~~~ 346 (551)
|.+ |+-.-+.|.||+|+|..-..+
T Consensus 1862 -------vs~-d~l~~~~daiv~a~gst~prd 1885 (2142)
T KOG0399|consen 1862 -------VSL-DELKKENDAIVLATGSTTPRD 1885 (2142)
T ss_pred -------ccH-HHHhhccCeEEEEeCCCCCcC
Confidence 221 222345799999999865444
|
|
| >COG2907 Predicted NAD/FAD-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00015 Score=70.35 Aligned_cols=52 Identities=19% Similarity=0.219 Sum_probs=39.6
Q ss_pred HHHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCc
Q 008860 289 RDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGR 341 (551)
Q Consensus 289 ~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~ 341 (551)
...+++.-..-+-++.+++.|..|..-.++ +.++..||++-.+|.||+|+-.
T Consensus 220 ~~yvq~laa~~~~~i~t~~~V~~l~rlPdG-v~l~~~~G~s~rFD~vViAth~ 271 (447)
T COG2907 220 RAYVQRLAADIRGRIETRTPVCRLRRLPDG-VVLVNADGESRRFDAVVIATHP 271 (447)
T ss_pred HHHHHHHhccccceeecCCceeeeeeCCCc-eEEecCCCCccccceeeeecCh
Confidence 344444444445569999999999988888 6677788998899999998754
|
|
| >PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [] | Back alignment and domain information |
|---|
Probab=97.72 E-value=7.4e-05 Score=76.76 Aligned_cols=85 Identities=16% Similarity=0.148 Sum_probs=53.6
Q ss_pred HHHHHHHHHHhCCCeE------EEEeecCccCCCCCHHHHHHHHHHHHhcCcEEEcCcccEEEEEcCC--c--eEEEEE-
Q 008860 256 IALEFAGIFSGLTSEV------HVFIRQKKVLRGFDEDIRDFVAEQMSLRGIEFHTEESPQAILKSTD--G--SLSVKT- 324 (551)
Q Consensus 256 ~g~e~a~~l~~~g~~V------tlv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~--~--~~~V~~- 324 (551)
+++|+-.+|.++=.++ .-+.+... ..-+.+..-+.+.|+++||++.++++|++|+-+.. . +..+.+
T Consensus 174 Sa~E~rRyl~Rf~h~~~~l~~l~~l~~T~Y---NQyeSii~Pl~~~L~~~GV~F~~~t~V~di~~~~~~~~~~~~~i~~~ 250 (500)
T PF06100_consen 174 SAVEFRRYLHRFIHEIPGLNDLSGLDRTKY---NQYESIILPLIRYLKSQGVDFRFNTKVTDIDFDITGDKKTATRIHIE 250 (500)
T ss_pred hHHHHHHHHHHHHHhcCCCCCccccccCcc---ccHHHHHHHHHHHHHHCCCEEECCCEEEEEEEEccCCCeeEEEEEEE
Confidence 6889988888762222 22222111 12345777899999999999999999999976432 1 112222
Q ss_pred CCCe--EE---EeeEEEEecCcCC
Q 008860 325 NKGT--VD---GFSHVMFATGRRP 343 (551)
Q Consensus 325 ~~G~--~i---~~d~vi~a~G~~p 343 (551)
.+|. +| +-|.|++..|..-
T Consensus 251 ~~g~~~~i~l~~~DlV~vT~GS~t 274 (500)
T PF06100_consen 251 QDGKEETIDLGPDDLVFVTNGSMT 274 (500)
T ss_pred cCCCeeEEEeCCCCEEEEECCccc
Confidence 4443 23 3688888888754
|
|
| >COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00027 Score=73.70 Aligned_cols=93 Identities=28% Similarity=0.421 Sum_probs=66.3
Q ss_pred ccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhhccCCCcccC
Q 008860 73 FDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDESNGFGWKYG 152 (551)
Q Consensus 73 ~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~~~ 152 (551)
.+++|||+|+.|+.+|..|++.|++|+++|. ...+++...
T Consensus 137 ~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~---------~~~~~~~~~------------------------------- 176 (415)
T COG0446 137 KDVVVVGAGPIGLEAAEAAAKRGKKVTLIEA---------ADRLGGQLL------------------------------- 176 (415)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCeEEEEEc---------ccccchhhh-------------------------------
Confidence 6899999999999999999999999999992 222222210
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEeE-EEEecCC----E----EEEcCEEEEeCeEEEcCCCCCC
Q 008860 153 TEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIEGR-GKIVDPH----T----VDVDGKLYSARHILISVGGRPF 222 (551)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~i~~~----~----v~v~g~~~~~d~lviAtG~~p~ 222 (551)
. ..+...+.+.++..||+++.+. +..++.. . ...++..+.+|.+++++|.+|+
T Consensus 177 -----------~------~~~~~~~~~~l~~~gi~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~d~~~~~~g~~p~ 238 (415)
T COG0446 177 -----------D------PEVAEELAELLEKYGVELLLGTKVVGVEGKGNTLVVERVVGIDGEEIKADLVIIGPGERPN 238 (415)
T ss_pred -----------h------HHHHHHHHHHHHHCCcEEEeCCceEEEEcccCcceeeEEEEeCCcEEEeeEEEEeeccccc
Confidence 0 2233445566777789887764 3444432 1 2227788999999999999985
|
|
| >COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=97.71 E-value=4.2e-05 Score=73.46 Aligned_cols=42 Identities=33% Similarity=0.515 Sum_probs=38.4
Q ss_pred CccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCeecc
Q 008860 72 DFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVL 122 (551)
Q Consensus 72 ~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~~~ 122 (551)
++|++|||+|.+|+..|..|++.|.+|+|||+ +..+||.|--
T Consensus 1 ~fd~lIVGaGlsG~V~A~~a~~~gk~VLIvek---------R~HIGGNaYd 42 (374)
T COG0562 1 MFDYLIVGAGLSGAVIAEVAAQLGKRVLIVEK---------RNHIGGNAYD 42 (374)
T ss_pred CCcEEEECCchhHHHHHHHHHHcCCEEEEEec---------cccCCCcccc
Confidence 48999999999999999999999999999995 8889999853
|
|
| >PLN02568 polyamine oxidase | Back alignment and domain information |
|---|
Probab=97.71 E-value=4.3e-05 Score=82.03 Aligned_cols=40 Identities=10% Similarity=0.068 Sum_probs=34.5
Q ss_pred cEEEcCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCc
Q 008860 301 IEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGR 341 (551)
Q Consensus 301 v~i~~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~ 341 (551)
-+|++++.|++|..++++ +.|.+.+|+++.+|.||+++..
T Consensus 255 ~~I~ln~~V~~I~~~~~~-v~V~~~dG~~~~aD~VIvTvPl 294 (539)
T PLN02568 255 GTIQLGRKVTRIEWQDEP-VKLHFADGSTMTADHVIVTVSL 294 (539)
T ss_pred CEEEeCCeEEEEEEeCCe-EEEEEcCCCEEEcCEEEEcCCH
Confidence 369999999999987766 7889999988999999998753
|
|
| >PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00026 Score=74.75 Aligned_cols=97 Identities=16% Similarity=0.191 Sum_probs=66.4
Q ss_pred eEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCCC-------CCH-----------HHH----------HHH----HH
Q 008860 247 KIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRG-------FDE-----------DIR----------DFV----AE 294 (551)
Q Consensus 247 ~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~~-------~~~-----------~~~----------~~l----~~ 294 (551)
.|+|||+|+.|+.+|..+++.|.+|+++++.+..+.. .+. ++. +.+ .+
T Consensus 5 DvvVIGgGpaGl~aA~~la~~g~~V~lie~~~~~~GG~~~~~gcip~k~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (441)
T PRK08010 5 QAVIIGFGKAGKTLAVTLAKAGWRVALIEQSNAMYGGTCINIGCIPTKTLVHDAQQHTDFVRAIQRKNEVVNFLRNKNFH 84 (441)
T ss_pred CEEEECCCHhHHHHHHHHHHCCCeEEEEcCCCCccceeEeeccccchHHHHHHhccCCCHHHHHHHHHHHHHHHHHhHHH
Confidence 6999999999999999999999999999987532110 111 111 111 11
Q ss_pred HHHh-cCcEEEcCcccEEEEEcCCceEEEEECCCe-EEEeeEEEEecCcCCCCCC
Q 008860 295 QMSL-RGIEFHTEESPQAILKSTDGSLSVKTNKGT-VDGFSHVMFATGRRPNTKN 347 (551)
Q Consensus 295 ~l~~-~Gv~i~~~~~v~~i~~~~~~~~~V~~~~G~-~i~~d~vi~a~G~~p~~~~ 347 (551)
.+.+ .|++++.+ ++..+. . +.+.|.+.+|+ ++.+|.+|+|||.+|....
T Consensus 85 ~~~~~~gv~~~~g-~~~~i~--~-~~~~v~~~~g~~~~~~d~lviATGs~p~~p~ 135 (441)
T PRK08010 85 NLADMPNIDVIDG-QAEFIN--N-HSLRVHRPEGNLEIHGEKIFINTGAQTVVPP 135 (441)
T ss_pred HHhhcCCcEEEEE-EEEEec--C-CEEEEEeCCCeEEEEeCEEEEcCCCcCCCCC
Confidence 2223 38888876 454443 2 23667777775 6999999999999986543
|
|
| >KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00042 Score=69.60 Aligned_cols=58 Identities=21% Similarity=0.156 Sum_probs=50.1
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCcC
Q 008860 285 DEDIRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRR 342 (551)
Q Consensus 285 ~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~ 342 (551)
-..++..+.+.+++.|-+|.++..|++|.-+++..+.|.+.||+++.+..|+.-++.+
T Consensus 263 ~Gavs~aia~~~~~~GaeI~tka~Vq~Illd~gka~GV~L~dG~ev~sk~VvSNAt~~ 320 (561)
T KOG4254|consen 263 MGAVSFAIAEGAKRAGAEIFTKATVQSILLDSGKAVGVRLADGTEVRSKIVVSNATPW 320 (561)
T ss_pred hhHHHHHHHHHHHhccceeeehhhhhheeccCCeEEEEEecCCcEEEeeeeecCCchH
Confidence 3467888999999999999999999999988877789999999999998887665543
|
|
| >KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00088 Score=69.65 Aligned_cols=136 Identities=18% Similarity=0.235 Sum_probs=89.2
Q ss_pred CCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCC----------------------------------------C-
Q 008860 245 PEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLR----------------------------------------G- 283 (551)
Q Consensus 245 ~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~----------------------------------------~- 283 (551)
.++++|||+|++|+-.|..|.+.|.++++++|.+.+.. .
T Consensus 6 ~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~iGGlW~y~~~~~~~~ss~Y~~l~tn~pKe~~~~~dfpf~~~~~~~ 85 (448)
T KOG1399|consen 6 SKDVAVIGAGPAGLAAARELLREGHEVVVFERTDDIGGLWKYTENVEVVHSSVYKSLRTNLPKEMMGYSDFPFPERDPRY 85 (448)
T ss_pred CCceEEECcchHHHHHHHHHHHCCCCceEEEecCCccceEeecCcccccccchhhhhhccCChhhhcCCCCCCcccCccc
Confidence 68999999999999999999999999999998875411 0
Q ss_pred C-C-HHHHHHHHHHHHhcCc--EEEcCcccEEEEEcCCceEEEEECCC----eEEEeeEEEEecCcC--CCCCCCCcccc
Q 008860 284 F-D-EDIRDFVAEQMSLRGI--EFHTEESPQAILKSTDGSLSVKTNKG----TVDGFSHVMFATGRR--PNTKNLGLEKV 353 (551)
Q Consensus 284 ~-~-~~~~~~l~~~l~~~Gv--~i~~~~~v~~i~~~~~~~~~V~~~~G----~~i~~d~vi~a~G~~--p~~~~l~l~~~ 353 (551)
+ + .++.+.|....+.-++ .+.+++++.+++...++...|.+.++ +...+|.|++|+|.. |+...+ .
T Consensus 86 ~p~~~e~~~YL~~yA~~F~l~~~i~f~~~v~~v~~~~~gkW~V~~~~~~~~~~~~ifd~VvVctGh~~~P~~P~~--~-- 161 (448)
T KOG1399|consen 86 FPSHREVLEYLRDYAKHFDLLKMINFNTEVVRVDSIDKGKWRVTTKDNGTQIEEEIFDAVVVCTGHYVEPRIPQI--P-- 161 (448)
T ss_pred CCCHHHHHHHHHHHHHhcChhhheEecccEEEEeeccCCceeEEEecCCcceeEEEeeEEEEcccCcCCCCCCcC--C--
Confidence 0 0 1334445555666665 57888888888887633377777554 357799999999998 444431 1
Q ss_pred CeeecC-CCCeEeCCCCC-C---CCCcEEEeCcCCC
Q 008860 354 GVKMTK-NGAIEVDEYSG-T---AVPSIWAVGDVTD 384 (551)
Q Consensus 354 gl~~~~-~G~i~vd~~~~-t---~~~~vya~GD~~~ 384 (551)
+..++. .|.+.-....+ . ....|.++|--.+
T Consensus 162 g~~~~~f~G~~iHS~~Yk~~e~f~~k~VlVIG~g~S 197 (448)
T KOG1399|consen 162 GPGIESFKGKIIHSHDYKSPEKFRDKVVLVVGCGNS 197 (448)
T ss_pred CCchhhcCCcceehhhccCcccccCceEEEECCCcc
Confidence 221221 13233222222 1 3477888885444
|
|
| >PRK06467 dihydrolipoamide dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00022 Score=75.87 Aligned_cols=96 Identities=20% Similarity=0.193 Sum_probs=66.1
Q ss_pred CeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCCC------CCH-------------------------------HH
Q 008860 246 EKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRG------FDE-------------------------------DI 288 (551)
Q Consensus 246 ~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~~------~~~-------------------------------~~ 288 (551)
-.++|||+|+.|+.+|..+++.|.+|+++++.+.+... .+. .+
T Consensus 5 ~DvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~~~GG~c~n~gciP~K~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~ 84 (471)
T PRK06467 5 TQVVVLGAGPAGYSAAFRAADLGLETVCVERYSTLGGVCLNVGCIPSKALLHVAKVIEEAKALAEHGIVFGEPKIDIDKM 84 (471)
T ss_pred ceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCcccccccCCCcccHHHHHHHHHHHHHHhhhhhcCcccCCCCcCHHHH
Confidence 47999999999999999999999999999986433110 111 01
Q ss_pred H-----------HHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEECCC--eEEEeeEEEEecCcCCCC
Q 008860 289 R-----------DFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTNKG--TVDGFSHVMFATGRRPNT 345 (551)
Q Consensus 289 ~-----------~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~G--~~i~~d~vi~a~G~~p~~ 345 (551)
. +.+...+++.||+++.++ ..-+ +. ..+.|...+| .++.+|.+|+|||.+|..
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~gV~~~~g~-a~~~--~~-~~v~v~~~~g~~~~~~~d~lViATGs~p~~ 150 (471)
T PRK06467 85 RARKEKVVKQLTGGLAGMAKGRKVTVVNGL-GKFT--GG-NTLEVTGEDGKTTVIEFDNAIIAAGSRPIQ 150 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCEEEEEE-EEEc--cC-CEEEEecCCCceEEEEcCEEEEeCCCCCCC
Confidence 0 011234566799998773 2222 22 2366766666 468999999999999863
|
|
| >PRK05976 dihydrolipoamide dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00028 Score=75.19 Aligned_cols=98 Identities=22% Similarity=0.201 Sum_probs=69.0
Q ss_pred CeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCC---------------------------C--C-----CHH----
Q 008860 246 EKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLR---------------------------G--F-----DED---- 287 (551)
Q Consensus 246 ~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~---------------------------~--~-----~~~---- 287 (551)
-.++|||+|+.|+.+|..+++.|.+|.++++.. +.. . . ..+
T Consensus 5 ydvvVIG~GpaG~~aA~~aa~~G~~v~lie~~~-~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~ 83 (472)
T PRK05976 5 YDLVIIGGGPGGYVAAIRAGQLGLKTALVEKGK-LGGTCLHKGCIPSKALLHSAEVFQTAKKASPFGISVSGPALDFAKV 83 (472)
T ss_pred ccEEEECCCHHHHHHHHHHHhCCCeEEEEEccC-CCcceEcCCcCchHHHHHHHHHHHHHHHHHhcCccCCCCccCHHHH
Confidence 479999999999999999999999999999752 100 0 0 001
Q ss_pred ----------HHHHHHHHHHhcCcEEEcCcccEEEEEc----CCceEEEEECCC--eEEEeeEEEEecCcCCCC
Q 008860 288 ----------IRDFVAEQMSLRGIEFHTEESPQAILKS----TDGSLSVKTNKG--TVDGFSHVMFATGRRPNT 345 (551)
Q Consensus 288 ----------~~~~l~~~l~~~Gv~i~~~~~v~~i~~~----~~~~~~V~~~~G--~~i~~d~vi~a~G~~p~~ 345 (551)
+.+.+.+.+++.||+++.+ .++.+... .++.+.|.+.+| +++.+|.+|+|||.+|+.
T Consensus 84 ~~~~~~~~~~l~~~~~~~~~~~gv~~~~g-~a~~i~~~~~~~~~~~~~v~~~~g~~~~~~~d~lViATGs~p~~ 156 (472)
T PRK05976 84 QERKDGIVDRLTKGVAALLKKGKIDVFHG-IGRILGPSIFSPMPGTVSVETETGENEMIIPENLLIATGSRPVE 156 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCEEEEE-EEEEeCCCCCcCCceEEEEEeCCCceEEEEcCEEEEeCCCCCCC
Confidence 1112234566779999988 45555432 112367777777 479999999999999864
|
|
| >COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.001 Score=69.83 Aligned_cols=136 Identities=18% Similarity=0.224 Sum_probs=89.1
Q ss_pred CeEEEEcCcHHHHHHHHHHHhCCCe-EEEEeecCcc----------------------CCC--C------C--HHHHHHH
Q 008860 246 EKIAIVGGGYIALEFAGIFSGLTSE-VHVFIRQKKV----------------------LRG--F------D--EDIRDFV 292 (551)
Q Consensus 246 ~~vvViG~G~~g~e~a~~l~~~g~~-Vtlv~~~~~~----------------------l~~--~------~--~~~~~~l 292 (551)
.+|+|||+|..|+-+|..|++.|.. +.++++.+.+ ++. + . .++.+.+
T Consensus 9 ~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~~Gg~W~~~ry~~l~~~~p~~~~~~~~~p~~~~~~~~~~~~~~~y~ 88 (443)
T COG2072 9 TDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVGGTWRYNRYPGLRLDSPKWLLGFPFLPFRWDEAFAPFAEIKDYI 88 (443)
T ss_pred ccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccCCcCCcchhccCCceEECCchheeccCCCccCCcccCCCcccHHHHH
Confidence 4799999999999999999999998 9999987532 010 1 0 1256677
Q ss_pred HHHHHhcCcE--EEcCcccEEEEEcCCc-eEEEEECCCeE--EEeeEEEEecCcCCCCCCCCccccCeeecCCCCeEeCC
Q 008860 293 AEQMSLRGIE--FHTEESPQAILKSTDG-SLSVKTNKGTV--DGFSHVMFATGRRPNTKNLGLEKVGVKMTKNGAIEVDE 367 (551)
Q Consensus 293 ~~~l~~~Gv~--i~~~~~v~~i~~~~~~-~~~V~~~~G~~--i~~d~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~ 367 (551)
...+++.++. +.+++.|..+..++++ ..+|++++|.+ +.+|.||+|||....... .+-.|++. -.|.+.-..
T Consensus 89 ~~~~~~y~~~~~i~~~~~v~~~~~~~~~~~w~V~~~~~~~~~~~a~~vV~ATG~~~~P~i--P~~~G~~~-f~g~~~HS~ 165 (443)
T COG2072 89 KDYLEKYGLRFQIRFNTRVEVADWDEDTKRWTVTTSDGGTGELTADFVVVATGHLSEPYI--PDFAGLDE-FKGRILHSA 165 (443)
T ss_pred HHHHHHcCceeEEEcccceEEEEecCCCCeEEEEEcCCCeeeEecCEEEEeecCCCCCCC--CCCCCccC-CCceEEchh
Confidence 7788877664 4556666666655543 47788888765 459999999998432221 12223332 123333221
Q ss_pred ----CCCCCCCcEEEeCcCCC
Q 008860 368 ----YSGTAVPSIWAVGDVTD 384 (551)
Q Consensus 368 ----~~~t~~~~vya~GD~~~ 384 (551)
...-.-++|-+||-.++
T Consensus 166 ~~~~~~~~~GKrV~VIG~GaS 186 (443)
T COG2072 166 DWPNPEDLRGKRVLVIGAGAS 186 (443)
T ss_pred cCCCccccCCCeEEEECCCcc
Confidence 22335588999997766
|
|
| >TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00012 Score=78.06 Aligned_cols=91 Identities=26% Similarity=0.372 Sum_probs=69.3
Q ss_pred CCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccC-------CC--CCHHHHHHHHHHHHhcCcEEEcCcccEEEEE
Q 008860 244 KPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVL-------RG--FDEDIRDFVAEQMSLRGIEFHTEESPQAILK 314 (551)
Q Consensus 244 ~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l-------~~--~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~ 314 (551)
.+++++|||+|+.|+++|..|++.|.+|+++++.+.+. +. ++.++.....+.+++.||++++++.+...
T Consensus 142 ~~~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~Gv~~~~~~~v~~~-- 219 (485)
T TIGR01317 142 TGKKVAVVGSGPAGLAAADQLNRAGHTVTVFEREDRCGGLLMYGIPNMKLDKAIVDRRIDLLSAEGIDFVTNTEIGVD-- 219 (485)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCCCceeeccCCCccCCHHHHHHHHHHHHhCCCEEECCCEeCCc--
Confidence 35799999999999999999999999999999877542 21 45566666678889999999999776311
Q ss_pred cCCceEEEEECCCeEEEeeEEEEecCcC-CC
Q 008860 315 STDGSLSVKTNKGTVDGFSHVMFATGRR-PN 344 (551)
Q Consensus 315 ~~~~~~~V~~~~G~~i~~d~vi~a~G~~-p~ 344 (551)
+.. +.....+|.|++|+|.. |.
T Consensus 220 -------~~~-~~~~~~~d~VilAtGa~~~~ 242 (485)
T TIGR01317 220 -------ISA-DELKEQFDAVVLAGGATKPR 242 (485)
T ss_pred -------cCH-HHHHhhCCEEEEccCCCCCC
Confidence 100 11135689999999998 44
|
This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate. |
| >PLN02697 lycopene epsilon cyclase | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00037 Score=74.40 Aligned_cols=97 Identities=15% Similarity=0.205 Sum_probs=71.8
Q ss_pred CeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCCCC------------C----------------------------
Q 008860 246 EKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGF------------D---------------------------- 285 (551)
Q Consensus 246 ~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~~~------------~---------------------------- 285 (551)
-.|+|||+|+.|+.+|..+++.|.+|.++++...+.... +
T Consensus 109 ~DVvIVGaGPAGLalA~~Lak~Gl~V~LIe~~~p~~~n~GvW~~~l~~lgl~~~i~~~w~~~~v~~~~~~~~~~~~~Yg~ 188 (529)
T PLN02697 109 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNYGVWEDEFKDLGLEDCIEHVWRDTIVYLDDDKPIMIGRAYGR 188 (529)
T ss_pred ccEEEECcCHHHHHHHHHHHhCCCcEEEecCcccCCCccccchhHHHhcCcHHHHHhhcCCcEEEecCCceeeccCcccE
Confidence 369999999999999999999999999998643221100 0
Q ss_pred ---HHHHHHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCcCC
Q 008860 286 ---EDIRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRP 343 (551)
Q Consensus 286 ---~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p 343 (551)
..+.+.+.+.+.+.|+++ .+++|+++..++++...+.+.+|+++.++.||.|+|..+
T Consensus 189 V~R~~L~~~Ll~~a~~~GV~~-~~~~V~~I~~~~~~~~vv~~~dG~~i~A~lVI~AdG~~S 248 (529)
T PLN02697 189 VSRTLLHEELLRRCVESGVSY-LSSKVDRITEASDGLRLVACEDGRVIPCRLATVASGAAS 248 (529)
T ss_pred EcHHHHHHHHHHHHHhcCCEE-EeeEEEEEEEcCCcEEEEEEcCCcEEECCEEEECCCcCh
Confidence 012234555667779998 567999998766653334567788899999999999977
|
|
| >KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00032 Score=67.35 Aligned_cols=38 Identities=34% Similarity=0.527 Sum_probs=33.3
Q ss_pred cEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCee
Q 008860 74 DLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTC 120 (551)
Q Consensus 74 dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~ 120 (551)
.|||||+|.|||+|+..+...|-.|+|+|+ ...+||..
T Consensus 11 pvvVIGgGLAGLsasn~iin~gg~V~llek---------~~s~GGNS 48 (477)
T KOG2404|consen 11 PVVVIGGGLAGLSASNDIINKGGIVILLEK---------AGSIGGNS 48 (477)
T ss_pred cEEEECCchhhhhhHHHHHhcCCeEEEEec---------cCCcCCcc
Confidence 499999999999999999998888999995 56677765
|
|
| >PRK06327 dihydrolipoamide dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00056 Score=72.86 Aligned_cols=30 Identities=37% Similarity=0.427 Sum_probs=28.9
Q ss_pred ccEEEECCChHHHHHHHHHHhCCCcEEEEc
Q 008860 73 FDLFTIGAGSGGVRASRFAANFGASVAICE 102 (551)
Q Consensus 73 ~dVvIIGgG~aGl~aA~~l~~~G~~V~liE 102 (551)
.+|+|||+|+.|+.+|..|++.|.+|+|++
T Consensus 184 ~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~ 213 (475)
T PRK06327 184 KKLAVIGAGVIGLELGSVWRRLGAEVTILE 213 (475)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEe
Confidence 589999999999999999999999999999
|
|
| >TIGR01790 carotene-cycl lycopene cyclase family protein | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.00051 Score=71.18 Aligned_cols=96 Identities=16% Similarity=0.145 Sum_probs=71.7
Q ss_pred eEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCCC---------C---------------------C-----------
Q 008860 247 KIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRG---------F---------------------D----------- 285 (551)
Q Consensus 247 ~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~~---------~---------------------~----------- 285 (551)
.|+|||+|+.|+.+|..|.+.|.+|+++++.+.+... + +
T Consensus 1 DviIiGaG~AGl~~A~~la~~g~~v~liE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELARPGLRVQLIEPHPPIPGNHTYGVWDDDLSDLGLADCVEHVWPDVYEYRFPKQPRKLGTAYG 80 (388)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCCCccccccHhhhhhhchhhHHhhcCCCceEEecCCcchhcCCcee
Confidence 3899999999999999999999999999976532100 0 0
Q ss_pred ----HHHHHHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCcCC
Q 008860 286 ----EDIRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRP 343 (551)
Q Consensus 286 ----~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p 343 (551)
..+.+.+.+.+.+.|++++ ..++..+..+++....|++.+|+++.++.||.|+|..+
T Consensus 81 ~i~~~~l~~~l~~~~~~~gv~~~-~~~v~~i~~~~~~~~~v~~~~g~~~~a~~VI~A~G~~s 141 (388)
T TIGR01790 81 SVDSTRLHEELLQKCPEGGVLWL-ERKAIHAEADGVALSTVYCAGGQRIQARLVIDARGFGP 141 (388)
T ss_pred EEcHHHHHHHHHHHHHhcCcEEE-ccEEEEEEecCCceeEEEeCCCCEEEeCEEEECCCCch
Confidence 1122335555677799886 44788887663444678888888899999999999987
|
This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene. |
| >PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00014 Score=81.80 Aligned_cols=93 Identities=25% Similarity=0.399 Sum_probs=69.8
Q ss_pred CCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccC-------CC--CCHHHHHHHHHHHHhcCcEEEcCcccEEEEE
Q 008860 244 KPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVL-------RG--FDEDIRDFVAEQMSLRGIEFHTEESPQAILK 314 (551)
Q Consensus 244 ~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l-------~~--~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~ 314 (551)
.+++|+|||+|+.|+.+|..|++.|.+|+++++.+.+. +. ++.++.+...+.+++.||+++.++.+.
T Consensus 430 ~~~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~~gip~~rlp~~~~~~~~~~l~~~gv~~~~~~~v~---- 505 (752)
T PRK12778 430 NGKKVAVIGSGPAGLSFAGDLAKRGYDVTVFEALHEIGGVLKYGIPEFRLPKKIVDVEIENLKKLGVKFETDVIVG---- 505 (752)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCeeeecCCCCCCCHHHHHHHHHHHHHCCCEEECCCEEC----
Confidence 35799999999999999999999999999999865321 21 355666666778889999999986541
Q ss_pred cCCceEEEEECCCeEEEeeEEEEecCc-CCCC
Q 008860 315 STDGSLSVKTNKGTVDGFSHVMFATGR-RPNT 345 (551)
Q Consensus 315 ~~~~~~~V~~~~G~~i~~d~vi~a~G~-~p~~ 345 (551)
..+++.+.....+|.||+|+|. .|..
T Consensus 506 -----~~v~~~~l~~~~ydavvlAtGa~~~~~ 532 (752)
T PRK12778 506 -----KTITIEELEEEGFKGIFIASGAGLPNF 532 (752)
T ss_pred -----CcCCHHHHhhcCCCEEEEeCCCCCCCC
Confidence 1133334344669999999998 4654
|
|
| >PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00053 Score=73.53 Aligned_cols=95 Identities=17% Similarity=0.221 Sum_probs=69.7
Q ss_pred eEEEEcCcHHHHHHHHHHHhCCCeEEEEeecC-cc-----------------------CC--------------------
Q 008860 247 KIAIVGGGYIALEFAGIFSGLTSEVHVFIRQK-KV-----------------------LR-------------------- 282 (551)
Q Consensus 247 ~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~-~~-----------------------l~-------------------- 282 (551)
.|+|||||..|+++|..+++.|.+|.++++.. .+ +.
T Consensus 6 DVIVVGGGpAG~eAA~~aAR~G~kV~LiE~~~d~iG~m~CnpsiGG~akg~lvrEidalGg~~g~~~d~~giq~r~ln~s 85 (618)
T PRK05192 6 DVIVVGGGHAGCEAALAAARMGAKTLLLTHNLDTIGQMSCNPAIGGIAKGHLVREIDALGGEMGKAIDKTGIQFRMLNTS 85 (618)
T ss_pred eEEEECchHHHHHHHHHHHHcCCcEEEEecccccccccCCccccccchhhHHHHHHHhcCCHHHHHHhhccCceeecccC
Confidence 69999999999999999999999999998863 11 00
Q ss_pred ----------CCCH-HHHHHHHHHHHhc-CcEEEcCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCcC
Q 008860 283 ----------GFDE-DIRDFVAEQMSLR-GIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRR 342 (551)
Q Consensus 283 ----------~~~~-~~~~~l~~~l~~~-Gv~i~~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~ 342 (551)
.+|. .+...+.+.+++. |++++ ...|.++..+++.+..|.+.+|..+.|+.||+|+|..
T Consensus 86 kGpAV~s~RaQiDr~ly~kaL~e~L~~~~nV~I~-q~~V~~Li~e~grV~GV~t~dG~~I~Ak~VIlATGTF 156 (618)
T PRK05192 86 KGPAVRALRAQADRKLYRAAMREILENQPNLDLF-QGEVEDLIVENGRVVGVVTQDGLEFRAKAVVLTTGTF 156 (618)
T ss_pred CCCceeCcHHhcCHHHHHHHHHHHHHcCCCcEEE-EeEEEEEEecCCEEEEEEECCCCEEECCEEEEeeCcc
Confidence 0000 0122344445544 78876 4578888766666567889999999999999999954
|
|
| >PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed | Back alignment and domain information |
|---|
Probab=97.60 E-value=7.9e-05 Score=83.78 Aligned_cols=31 Identities=19% Similarity=0.365 Sum_probs=28.7
Q ss_pred ccEEEECCChHHHHHHHHHHhC--CCcEEEEcc
Q 008860 73 FDLFTIGAGSGGVRASRFAANF--GASVAICEL 103 (551)
Q Consensus 73 ~dVvIIGgG~aGl~aA~~l~~~--G~~V~liE~ 103 (551)
++|+|||||+||+++|+.|++. |++|+|+|+
T Consensus 1 m~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr 33 (765)
T PRK08255 1 MRIVCIGGGPAGLYFALLMKLLDPAHEVTVVER 33 (765)
T ss_pred CeEEEECCCHHHHHHHHHHHHhCCCCeEEEEec
Confidence 3799999999999999999997 899999993
|
|
| >PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.60 E-value=7.7e-05 Score=80.12 Aligned_cols=31 Identities=42% Similarity=0.626 Sum_probs=29.8
Q ss_pred CccEEEECCChHHHHHHHHHHhCCCcEEEEcc
Q 008860 72 DFDLFTIGAGSGGVRASRFAANFGASVAICEL 103 (551)
Q Consensus 72 ~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~ 103 (551)
++||||||+| +|++||+++++.|.+|+||||
T Consensus 7 ~~DVvVVG~G-aGl~aA~~aa~~G~~V~vlEk 37 (513)
T PRK12837 7 EVDVLVAGSG-GGVAGAYTAAREGLSVALVEA 37 (513)
T ss_pred ccCEEEECch-HHHHHHHHHHHCCCcEEEEec
Confidence 6899999999 999999999999999999994
|
|
| >PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.00016 Score=79.83 Aligned_cols=91 Identities=20% Similarity=0.239 Sum_probs=68.6
Q ss_pred CCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccC-------CC--CCHHHHHHHHHHHHhcCcEEEcCcccEEEEE
Q 008860 244 KPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVL-------RG--FDEDIRDFVAEQMSLRGIEFHTEESPQAILK 314 (551)
Q Consensus 244 ~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l-------~~--~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~ 314 (551)
..++|+|||+|+.|+.+|..|++.|.+|+++++.+.+. +. ++.++.+...+.+++.|+++++++.+. +
T Consensus 192 ~~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~~GG~l~~gip~~~~~~~~~~~~~~~l~~~Gv~i~~~~~v~-~-- 268 (652)
T PRK12814 192 SGKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQAGGMMRYGIPRFRLPESVIDADIAPLRAMGAEFRFNTVFG-R-- 268 (652)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCceeeecCCCCCCCHHHHHHHHHHHHHcCCEEEeCCccc-C--
Confidence 45799999999999999999999999999999877541 22 455666667778889999999986541 1
Q ss_pred cCCceEEEEECCCeEEEeeEEEEecCcCCC
Q 008860 315 STDGSLSVKTNKGTVDGFSHVMFATGRRPN 344 (551)
Q Consensus 315 ~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~ 344 (551)
.+.+.+.. ..+|.||+|+|..+.
T Consensus 269 ------dv~~~~~~-~~~DaVilAtGa~~~ 291 (652)
T PRK12814 269 ------DITLEELQ-KEFDAVLLAVGAQKA 291 (652)
T ss_pred ------ccCHHHHH-hhcCEEEEEcCCCCC
Confidence 01222221 358999999999764
|
|
| >PRK12416 protoporphyrinogen oxidase; Provisional | Back alignment and domain information |
|---|
Probab=97.59 E-value=6.7e-05 Score=79.77 Aligned_cols=51 Identities=16% Similarity=0.089 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecC
Q 008860 287 DIRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATG 340 (551)
Q Consensus 287 ~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G 340 (551)
.+.+.+.+.+++ ++|+++++|++|+.++++ +.|.+.+|+.+.+|.||+|+.
T Consensus 227 ~l~~~l~~~l~~--~~i~~~~~V~~I~~~~~~-~~v~~~~g~~~~ad~VI~a~p 277 (463)
T PRK12416 227 TIIDRLEEVLTE--TVVKKGAVTTAVSKQGDR-YEISFANHESIQADYVVLAAP 277 (463)
T ss_pred HHHHHHHHhccc--ccEEcCCEEEEEEEcCCE-EEEEECCCCEEEeCEEEECCC
Confidence 344555555543 589999999999987776 778888888899999999874
|
|
| >PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.00019 Score=82.59 Aligned_cols=92 Identities=22% Similarity=0.263 Sum_probs=69.0
Q ss_pred CCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccC-------CC--CCHHHHHHHHHHHHhcCcEEEcCcccEEEEEc
Q 008860 245 PEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVL-------RG--FDEDIRDFVAEQMSLRGIEFHTEESPQAILKS 315 (551)
Q Consensus 245 ~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l-------~~--~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~ 315 (551)
.++|+|||+|+.|+.+|..|++.|.+|+++++.+.+. +. ++.++.+...+.+++.||++++++.+.
T Consensus 430 ~~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~~~~GG~l~~gip~~rl~~e~~~~~~~~l~~~Gv~~~~~~~vg----- 504 (1006)
T PRK12775 430 LGKVAICGSGPAGLAAAADLVKYGVDVTVYEALHVVGGVLQYGIPSFRLPRDIIDREVQRLVDIGVKIETNKVIG----- 504 (1006)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCcceeeccCCccCCCHHHHHHHHHHHHHCCCEEEeCCccC-----
Confidence 4799999999999999999999999999999876542 22 356777788888999999999996541
Q ss_pred CCceEEEEECCC-eEEEeeEEEEecCcC-CCC
Q 008860 316 TDGSLSVKTNKG-TVDGFSHVMFATGRR-PNT 345 (551)
Q Consensus 316 ~~~~~~V~~~~G-~~i~~d~vi~a~G~~-p~~ 345 (551)
. .+++.+- +...+|.||+|||.. |..
T Consensus 505 -~---~~~~~~l~~~~~yDaViIATGa~~pr~ 532 (1006)
T PRK12775 505 -K---TFTVPQLMNDKGFDAVFLGVGAGAPTF 532 (1006)
T ss_pred -C---ccCHHHHhhccCCCEEEEecCCCCCCC
Confidence 1 1111111 024589999999995 543
|
|
| >TIGR03385 CoA_CoA_reduc CoA-disulfide reductase | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.00034 Score=73.50 Aligned_cols=95 Identities=18% Similarity=0.252 Sum_probs=63.5
Q ss_pred ccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhhccCCCcccC
Q 008860 73 FDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDESNGFGWKYG 152 (551)
Q Consensus 73 ~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~~~ 152 (551)
.+|+|||||++|+.+|..|++.|.+|+++++ ...+..
T Consensus 138 ~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~---------~~~~~~---------------------------------- 174 (427)
T TIGR03385 138 ENVVIIGGGYIGIEMAEALRERGKNVTLIHR---------SERILN---------------------------------- 174 (427)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEEC---------CcccCc----------------------------------
Confidence 5799999999999999999999999999992 111000
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEe-EEEEecCCE-E-EE-cCEEEEeCeEEEcCCCCCCCC
Q 008860 153 TEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIEG-RGKIVDPHT-V-DV-DGKLYSARHILISVGGRPFIP 224 (551)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~i~~~~-v-~v-~g~~~~~d~lviAtG~~p~~p 224 (551)
+..+ .. +...+.+.+++.||+++.+ .+..++... + .+ +++++.+|.+++|+|.+|..+
T Consensus 175 --~~~~-~~-----------~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~ 236 (427)
T TIGR03385 175 --KLFD-EE-----------MNQIVEEELKKHEINLRLNEEVDSIEGEERVKVFTSGGVYQADMVILATGIKPNSE 236 (427)
T ss_pred --cccC-HH-----------HHHHHHHHHHHcCCEEEeCCEEEEEecCCCEEEEcCCCEEEeCEEEECCCccCCHH
Confidence 0001 01 1122334556779998865 344454322 2 23 677899999999999988753
|
Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol. |
| >TIGR02731 phytoene_desat phytoene desaturase | Back alignment and domain information |
|---|
Probab=97.56 E-value=7.8e-05 Score=79.00 Aligned_cols=56 Identities=16% Similarity=0.125 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHhcCcEEEcCcccEEEEEcCCc-eEEEEECCCe-----EEEeeEEEEecCc
Q 008860 286 EDIRDFVAEQMSLRGIEFHTEESPQAILKSTDG-SLSVKTNKGT-----VDGFSHVMFATGR 341 (551)
Q Consensus 286 ~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~-~~~V~~~~G~-----~i~~d~vi~a~G~ 341 (551)
..+.+.+.+.+++.|++|++++.|++|..++++ ++.|++.+|+ ++.+|.||+|+..
T Consensus 213 ~~l~~~l~~~l~~~g~~i~l~~~V~~I~~~~~~~v~~v~~~~~~~~~~~~~~a~~VI~a~p~ 274 (453)
T TIGR02731 213 ERLCQPIVDYITSRGGEVRLNSRLKEIVLNEDGSVKHFVLADGEGQRRFEVTADAYVSAMPV 274 (453)
T ss_pred HHHHHHHHHHHHhcCCEEeCCCeeEEEEECCCCCEEEEEEecCCCCceeEEECCEEEEcCCH
Confidence 456788888899999999999999999865544 4567776654 7899999999865
|
Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway. |
| >PRK06912 acoL dihydrolipoamide dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.00063 Score=72.14 Aligned_cols=94 Identities=24% Similarity=0.450 Sum_probs=63.2
Q ss_pred ccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhhccCCCcccC
Q 008860 73 FDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDESNGFGWKYG 152 (551)
Q Consensus 73 ~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~~~ 152 (551)
.+++|||||+.|+.+|..+++.|.+|+|+++ ...+ +|
T Consensus 171 ~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~---------~~~l---------l~------------------------- 207 (458)
T PRK06912 171 SSLLIVGGGVIGCEFASIYSRLGTKVTIVEM---------APQL---------LP------------------------- 207 (458)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCeEEEEec---------CCCc---------Cc-------------------------
Confidence 5799999999999999999999999999992 1110 00
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEeE-EEEecC--CEEEE--cC--EEEEeCeEEEcCCCCCCCC
Q 008860 153 TEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIEGR-GKIVDP--HTVDV--DG--KLYSARHILISVGGRPFIP 224 (551)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~i~~--~~v~v--~g--~~~~~d~lviAtG~~p~~p 224 (551)
..+ .+ +...+.+.+++.||+++.+. +..++. ..+.+ ++ .++.+|.|++|+|.+|+..
T Consensus 208 ---~~d-~e-----------~~~~l~~~L~~~GI~i~~~~~V~~i~~~~~~v~~~~~g~~~~i~~D~vivA~G~~p~~~ 271 (458)
T PRK06912 208 ---GED-ED-----------IAHILREKLENDGVKIFTGAALKGLNSYKKQALFEYEGSIQEVNAEFVLVSVGRKPRVQ 271 (458)
T ss_pred ---ccc-HH-----------HHHHHHHHHHHCCCEEEECCEEEEEEEcCCEEEEEECCceEEEEeCEEEEecCCccCCC
Confidence 001 01 11223345667799998873 444432 23333 33 3689999999999998764
|
|
| >PRK06116 glutathione reductase; Validated | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.00036 Score=73.83 Aligned_cols=93 Identities=18% Similarity=0.327 Sum_probs=65.5
Q ss_pred eEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCC------------------------------CCC--------H--
Q 008860 247 KIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLR------------------------------GFD--------E-- 286 (551)
Q Consensus 247 ~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~------------------------------~~~--------~-- 286 (551)
.++|||+|+.|+.+|..+++.|.+|+++++. .+.. .++ .
T Consensus 6 DvvVIG~GpaG~~aA~~~a~~G~~V~liE~~-~~GG~c~n~gciP~k~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 84 (450)
T PRK06116 6 DLIVIGGGSGGIASANRAAMYGAKVALIEAK-RLGGTCVNVGCVPKKLMWYGAQIAEAFHDYAPGYGFDVTENKFDWAKL 84 (450)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCeEEEEecc-chhhhhhccCcchHHHHHHHHHHHHHHHhHHHhcCCCCCCCCcCHHHH
Confidence 6999999999999999999999999999975 2100 000 0
Q ss_pred ---------HHHHHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCcCCCCCC
Q 008860 287 ---------DIRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNTKN 347 (551)
Q Consensus 287 ---------~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~~~~ 347 (551)
.+.+.+.+.+++.||+++.+ ++..+. .. +|++ +|+++.+|.+|+|||.+|+...
T Consensus 85 ~~~~~~~~~~~~~~~~~~l~~~gv~~~~g-~~~~v~--~~---~v~~-~g~~~~~d~lViATGs~p~~p~ 147 (450)
T PRK06116 85 IANRDAYIDRLHGSYRNGLENNGVDLIEG-FARFVD--AH---TVEV-NGERYTADHILIATGGRPSIPD 147 (450)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCEEEEE-EEEEcc--CC---EEEE-CCEEEEeCEEEEecCCCCCCCC
Confidence 01122334466789999887 344442 22 2444 6778999999999999987643
|
|
| >TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.00029 Score=79.96 Aligned_cols=90 Identities=21% Similarity=0.307 Sum_probs=66.0
Q ss_pred CCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccC-------CC--CCHHHHHHHHHHHHhcCcEEEcCcccEEEEEc
Q 008860 245 PEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVL-------RG--FDEDIRDFVAEQMSLRGIEFHTEESPQAILKS 315 (551)
Q Consensus 245 ~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l-------~~--~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~ 315 (551)
+++|+|||+|+.|+.+|..|++.|.+|+++++.+.+. +. .+.+..+...+.+.+.||++++++...
T Consensus 537 ~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~~lGG~l~~~IP~~rlp~e~l~~~ie~l~~~GVe~~~g~~~d----- 611 (1012)
T TIGR03315 537 AHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEKPGGVVKNIIPEFRISAESIQKDIELVKFHGVEFKYGCSPD----- 611 (1012)
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCeEEEEecccccCceeeecccccCCCHHHHHHHHHHHHhcCcEEEEecccc-----
Confidence 5689999999999999999999999999999876431 21 344555555677788899999884211
Q ss_pred CCceEEEEECCCeEEEeeEEEEecCcCCCC
Q 008860 316 TDGSLSVKTNKGTVDGFSHVMFATGRRPNT 345 (551)
Q Consensus 316 ~~~~~~V~~~~G~~i~~d~vi~a~G~~p~~ 345 (551)
+.+.+.+...+|.||+|+|.++..
T Consensus 612 ------~~ve~l~~~gYDaVIIATGA~~~~ 635 (1012)
T TIGR03315 612 ------LTVAELKNQGYKYVILAIGAWKHG 635 (1012)
T ss_pred ------eEhhhhhcccccEEEECCCCCCCC
Confidence 112222345689999999998643
|
Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase. |
| >PRK12810 gltD glutamate synthase subunit beta; Reviewed | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.00022 Score=75.83 Aligned_cols=90 Identities=24% Similarity=0.371 Sum_probs=67.5
Q ss_pred CCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccC-------C--CCCHHHHHHHHHHHHhcCcEEEcCcccEEEEE
Q 008860 244 KPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVL-------R--GFDEDIRDFVAEQMSLRGIEFHTEESPQAILK 314 (551)
Q Consensus 244 ~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l-------~--~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~ 314 (551)
.+++|+|||+|+.|+.+|..|++.|.+|+++++.+.+. + .++.++.....+.+++.|+++++++.+..
T Consensus 142 ~~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~~GG~l~~gip~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~--- 218 (471)
T PRK12810 142 TGKKVAVVGSGPAGLAAADQLARAGHKVTVFERADRIGGLLRYGIPDFKLEKEVIDRRIELMEAEGIEFRTNVEVGK--- 218 (471)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCceeeecCCcccCCHHHHHHHHHHHHhCCcEEEeCCEECC---
Confidence 45799999999999999999999999999999876542 1 13555666667788899999999975531
Q ss_pred cCCceEEEEECCCeEEEeeEEEEecCcCC
Q 008860 315 STDGSLSVKTNKGTVDGFSHVMFATGRRP 343 (551)
Q Consensus 315 ~~~~~~~V~~~~G~~i~~d~vi~a~G~~p 343 (551)
+ +.. +.....+|.||+|+|..+
T Consensus 219 ~------~~~-~~~~~~~d~vvlAtGa~~ 240 (471)
T PRK12810 219 D------ITA-EELLAEYDAVFLGTGAYK 240 (471)
T ss_pred c------CCH-HHHHhhCCEEEEecCCCC
Confidence 0 000 111246899999999973
|
|
| >PRK06416 dihydrolipoamide dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.00062 Score=72.33 Aligned_cols=95 Identities=32% Similarity=0.483 Sum_probs=64.1
Q ss_pred ccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhhccCCCcccC
Q 008860 73 FDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDESNGFGWKYG 152 (551)
Q Consensus 73 ~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~~~ 152 (551)
.+++|||||+.|+.+|..|++.|.+|+++++ ...+ +|
T Consensus 173 ~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~---------~~~~---------l~------------------------- 209 (462)
T PRK06416 173 KSLVVIGGGYIGVEFASAYASLGAEVTIVEA---------LPRI---------LP------------------------- 209 (462)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEEc---------CCCc---------CC-------------------------
Confidence 5799999999999999999999999999992 1110 00
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEe-EEEEecC--CEEEE---cC---EEEEeCeEEEcCCCCCCC
Q 008860 153 TEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIEG-RGKIVDP--HTVDV---DG---KLYSARHILISVGGRPFI 223 (551)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~i~~--~~v~v---~g---~~~~~d~lviAtG~~p~~ 223 (551)
..+ ++ +...+.+.+++.||+++.+ .+..++. ..+.+ ++ +.+.+|.+|+|+|.+|+.
T Consensus 210 ---~~~-~~-----------~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~~v~v~~~~gg~~~~i~~D~vi~a~G~~p~~ 274 (462)
T PRK06416 210 ---GED-KE-----------ISKLAERALKKRGIKIKTGAKAKKVEQTDDGVTVTLEDGGKEETLEADYVLVAVGRRPNT 274 (462)
T ss_pred ---cCC-HH-----------HHHHHHHHHHHcCCEEEeCCEEEEEEEeCCEEEEEEEeCCeeEEEEeCEEEEeeCCccCC
Confidence 001 01 1122334566779999887 3444432 23333 44 679999999999999876
Q ss_pred CC
Q 008860 224 PD 225 (551)
Q Consensus 224 p~ 225 (551)
..
T Consensus 275 ~~ 276 (462)
T PRK06416 275 EN 276 (462)
T ss_pred CC
Confidence 53
|
|
| >TIGR03219 salicylate_mono salicylate 1-monooxygenase | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.00084 Score=70.27 Aligned_cols=97 Identities=16% Similarity=0.158 Sum_probs=70.9
Q ss_pred eEEEEcCcHHHHHHHHHHHhCC-CeEEEEeecCccCCC-----CCH-------------HH-------------------
Q 008860 247 KIAIVGGGYIALEFAGIFSGLT-SEVHVFIRQKKVLRG-----FDE-------------DI------------------- 288 (551)
Q Consensus 247 ~vvViG~G~~g~e~a~~l~~~g-~~Vtlv~~~~~~l~~-----~~~-------------~~------------------- 288 (551)
+|+|||+|..|+-+|..|++.| .+|+++++.+.+... +.+ .+
T Consensus 2 ~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~~~~~~G~gi~l~~~~~~~L~~lg~~~~~~~~~~~~~~~~~~~~~~~~ 81 (414)
T TIGR03219 2 RVAIIGGGIAGVALALNLCKHSHLNVQLFEAAPAFGEVGAGVSFGANAVRAIVGLGLGEAYTQVADSTPAPWQDIWFEWR 81 (414)
T ss_pred eEEEECCCHHHHHHHHHHHhcCCCCEEEEecCCcCCCCccceeeCccHHHHHHHcCChhHHHHHhcCCCccCcceeEEEE
Confidence 6899999999999999999998 599999987653100 000 00
Q ss_pred ----------------------HHHHHHHHHhc--CcEEEcCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCcCCC
Q 008860 289 ----------------------RDFVAEQMSLR--GIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPN 344 (551)
Q Consensus 289 ----------------------~~~l~~~l~~~--Gv~i~~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~ 344 (551)
...+.+.|.+. ++.++++++|++++.++++ +.|.+.+|+++++|.||.|.|.+..
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~i~R~~l~~~L~~~~~~~~v~~~~~v~~i~~~~~~-~~v~~~~g~~~~ad~vVgADG~~S~ 160 (414)
T TIGR03219 82 NGSDASYLGATIAPGVGQSSVHRADFLDALLKHLPEGIASFGKRATQIEEQAEE-VQVLFTDGTEYRCDLLIGADGIKSA 160 (414)
T ss_pred ecCccceeeeeccccCCcccCCHHHHHHHHHHhCCCceEEcCCEEEEEEecCCc-EEEEEcCCCEEEeeEEEECCCccHH
Confidence 01122222221 4567889999999887666 7888899989999999999998764
|
Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway. |
| >PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00024 Score=78.35 Aligned_cols=91 Identities=23% Similarity=0.347 Sum_probs=70.2
Q ss_pred CCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccC-------C--CCCHHHHHHHHHHHHhcCcEEEcCcccEEEEE
Q 008860 244 KPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVL-------R--GFDEDIRDFVAEQMSLRGIEFHTEESPQAILK 314 (551)
Q Consensus 244 ~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l-------~--~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~ 314 (551)
.+++|+|||+|+.|+..|..|++.|.+|+++++.+.+. + .++.++.+...+.+++.||++++++.+..
T Consensus 309 ~~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v~~--- 385 (639)
T PRK12809 309 RSEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGGMLTFGIPPFKLDKTVLSQRREIFTAMGIDFHLNCEIGR--- 385 (639)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCCCCeeeccCCcccCCHHHHHHHHHHHHHCCeEEEcCCccCC---
Confidence 46899999999999999999999999999999887532 1 25667777677888999999999976631
Q ss_pred cCCceEEEEECCCeEEEeeEEEEecCcCCC
Q 008860 315 STDGSLSVKTNKGTVDGFSHVMFATGRRPN 344 (551)
Q Consensus 315 ~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~ 344 (551)
+ +.+.+. ...+|.|++|+|..+.
T Consensus 386 --~----~~~~~l-~~~~DaV~latGa~~~ 408 (639)
T PRK12809 386 --D----ITFSDL-TSEYDAVFIGVGTYGM 408 (639)
T ss_pred --c----CCHHHH-HhcCCEEEEeCCCCCC
Confidence 0 111111 2468999999998754
|
|
| >PRK09897 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.0012 Score=70.51 Aligned_cols=98 Identities=17% Similarity=0.193 Sum_probs=68.8
Q ss_pred CeEEEEcCcHHHHHHHHHHHhCC--CeEEEEeecCccCCC--C---------------------CHHHHHH---------
Q 008860 246 EKIAIVGGGYIALEFAGIFSGLT--SEVHVFIRQKKVLRG--F---------------------DEDIRDF--------- 291 (551)
Q Consensus 246 ~~vvViG~G~~g~e~a~~l~~~g--~~Vtlv~~~~~~l~~--~---------------------~~~~~~~--------- 291 (551)
++|+|||+|+.|+-++..|.+.+ .+|++++++..+..+ + .+.+.++
T Consensus 2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~~G~G~ays~~~~~~~L~~N~~~~~~p~~~~~f~~Wl~~~~~~~~ 81 (534)
T PRK09897 2 KKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADEAGVGMPYSDEENSKMMLANIASIEIPPIYCTYLEWLQKQEDSHL 81 (534)
T ss_pred CeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCCCCcceeecCCCChHHHHhcccccccCCChHHHHHHhhhhhHHHH
Confidence 47999999999999999997764 479999985543211 0 0001111
Q ss_pred -------------------------------HHHHHHhcC--cEEEcCcccEEEEEcCCceEEEEECC-CeEEEeeEEEE
Q 008860 292 -------------------------------VAEQMSLRG--IEFHTEESPQAILKSTDGSLSVKTNK-GTVDGFSHVMF 337 (551)
Q Consensus 292 -------------------------------l~~~l~~~G--v~i~~~~~v~~i~~~~~~~~~V~~~~-G~~i~~d~vi~ 337 (551)
+.+.+.+.| +.++.+++|++++.++++ +.|.+.+ |..+.+|.||+
T Consensus 82 ~~~g~~~~~l~~~~f~PR~l~G~YL~~~f~~l~~~a~~~G~~V~v~~~~~V~~I~~~~~g-~~V~t~~gg~~i~aD~VVL 160 (534)
T PRK09897 82 QRYGVKKETLHDRQFLPRILLGEYFRDQFLRLVDQARQQKFAVAVYESCQVTDLQITNAG-VMLATNQDLPSETFDLAVI 160 (534)
T ss_pred HhcCCcceeecCCccCCeecchHHHHHHHHHHHHHHHHcCCeEEEEECCEEEEEEEeCCE-EEEEECCCCeEEEcCEEEE
Confidence 222334555 788889899999887666 7777755 46799999999
Q ss_pred ecCcCCC
Q 008860 338 ATGRRPN 344 (551)
Q Consensus 338 a~G~~p~ 344 (551)
|+|..+.
T Consensus 161 AtGh~~p 167 (534)
T PRK09897 161 ATGHVWP 167 (534)
T ss_pred CCCCCCC
Confidence 9998554
|
|
| >KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.0043 Score=61.30 Aligned_cols=95 Identities=25% Similarity=0.420 Sum_probs=65.1
Q ss_pred ccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhhccCCCcccC
Q 008860 73 FDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDESNGFGWKYG 152 (551)
Q Consensus 73 ~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~~~ 152 (551)
.+++|||||..||..+.--.+.|.+|++|| ..+.+||.
T Consensus 212 k~~~viG~G~IGLE~gsV~~rLGseVT~VE---------f~~~i~~~--------------------------------- 249 (506)
T KOG1335|consen 212 KKLTVIGAGYIGLEMGSVWSRLGSEVTVVE---------FLDQIGGV--------------------------------- 249 (506)
T ss_pred ceEEEEcCceeeeehhhHHHhcCCeEEEEE---------ehhhhccc---------------------------------
Confidence 579999999999999999999999999999 12333332
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEeE-EEEe---cCCEEE--E------cCEEEEeCeEEEcCCCC
Q 008860 153 TEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIEGR-GKIV---DPHTVD--V------DGKLYSARHILISVGGR 220 (551)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~i---~~~~v~--v------~g~~~~~d~lviAtG~~ 220 (551)
.|. ++...+++.+.+.+++|..++ +... ++..+. + ..+++++|.+++++|-+
T Consensus 250 ----mD~------------Eisk~~qr~L~kQgikF~l~tkv~~a~~~~dg~v~i~ve~ak~~k~~tle~DvlLVsiGRr 313 (506)
T KOG1335|consen 250 ----MDG------------EISKAFQRVLQKQGIKFKLGTKVTSATRNGDGPVEIEVENAKTGKKETLECDVLLVSIGRR 313 (506)
T ss_pred ----cCH------------HHHHHHHHHHHhcCceeEeccEEEEeeccCCCceEEEEEecCCCceeEEEeeEEEEEccCc
Confidence 111 122233456677799998874 2222 222333 3 23578999999999999
Q ss_pred CCCCC
Q 008860 221 PFIPD 225 (551)
Q Consensus 221 p~~p~ 225 (551)
|+.-.
T Consensus 314 P~t~G 318 (506)
T KOG1335|consen 314 PFTEG 318 (506)
T ss_pred ccccC
Confidence 87643
|
|
| >PLN02676 polyamine oxidase | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.00012 Score=77.80 Aligned_cols=40 Identities=23% Similarity=0.278 Sum_probs=36.0
Q ss_pred cEEEcCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCc
Q 008860 301 IEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGR 341 (551)
Q Consensus 301 v~i~~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~ 341 (551)
.+|++++.|++|..++++ +.|++.+|+++.+|.||++++.
T Consensus 245 ~~I~l~~~V~~I~~~~~g-V~V~~~~G~~~~a~~VIvtvPl 284 (487)
T PLN02676 245 PRLKLNKVVREISYSKNG-VTVKTEDGSVYRAKYVIVSVSL 284 (487)
T ss_pred CceecCCEeeEEEEcCCc-EEEEECCCCEEEeCEEEEccCh
Confidence 679999999999988777 8899999988999999999864
|
|
| >COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.00024 Score=74.11 Aligned_cols=89 Identities=25% Similarity=0.300 Sum_probs=69.5
Q ss_pred CCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccC-------CC--CCHHHHHHHHHHHHhcCcEEEcCcccEEEEEc
Q 008860 245 PEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVL-------RG--FDEDIRDFVAEQMSLRGIEFHTEESPQAILKS 315 (551)
Q Consensus 245 ~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l-------~~--~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~ 315 (551)
+++|+|||+|+.|+.+|..|++.|+.|+++++.+..- |. ++.++.+...+.|++.|++|+.++++-.
T Consensus 123 g~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~GGll~yGIP~~kl~k~i~d~~i~~l~~~Gv~~~~~~~vG~---- 198 (457)
T COG0493 123 GKKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALDGGLLLYGIPDFKLPKDILDRRLELLERSGVEFKLNVRVGR---- 198 (457)
T ss_pred CCEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCCCceeEEecCchhhccchHHHHHHHHHHHcCeEEEEcceECC----
Confidence 5899999999999999999999999999999887542 22 5778889999999999999999966531
Q ss_pred CCceEEEEECCCeEEEeeEEEEecCcCC
Q 008860 316 TDGSLSVKTNKGTVDGFSHVMFATGRRP 343 (551)
Q Consensus 316 ~~~~~~V~~~~G~~i~~d~vi~a~G~~p 343 (551)
.+++++= .-+.|.|++++|..-
T Consensus 199 -----~it~~~L-~~e~Dav~l~~G~~~ 220 (457)
T COG0493 199 -----DITLEEL-LKEYDAVFLATGAGK 220 (457)
T ss_pred -----cCCHHHH-HHhhCEEEEeccccC
Confidence 0111111 134599999999743
|
|
| >PRK14694 putative mercuric reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.00098 Score=70.90 Aligned_cols=93 Identities=19% Similarity=0.302 Sum_probs=63.8
Q ss_pred ccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhhccCCCcccC
Q 008860 73 FDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDESNGFGWKYG 152 (551)
Q Consensus 73 ~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~~~ 152 (551)
.+++|||+|+.|+..|..|++.|.+|++++ ...+ +|
T Consensus 179 ~~vvViG~G~~G~E~A~~l~~~g~~Vtlv~----------~~~~---------l~------------------------- 214 (468)
T PRK14694 179 ERLLVIGASVVALELAQAFARLGSRVTVLA----------RSRV---------LS------------------------- 214 (468)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEE----------CCCC---------CC-------------------------
Confidence 579999999999999999999999999998 2110 00
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEe-EEEEec--CCEEEE--cCEEEEeCeEEEcCCCCCCCC
Q 008860 153 TEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIEG-RGKIVD--PHTVDV--DGKLYSARHILISVGGRPFIP 224 (551)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~i~--~~~v~v--~g~~~~~d~lviAtG~~p~~p 224 (551)
..+ ++ +...+.+.+++.||+++.+ .+..++ ...+.+ ++.++.+|.+++|+|.+|+..
T Consensus 215 ---~~~-~~-----------~~~~l~~~l~~~GI~v~~~~~v~~i~~~~~~~~v~~~~~~i~~D~vi~a~G~~pn~~ 276 (468)
T PRK14694 215 ---QED-PA-----------VGEAIEAAFRREGIEVLKQTQASEVDYNGREFILETNAGTLRAEQLLVATGRTPNTE 276 (468)
T ss_pred ---CCC-HH-----------HHHHHHHHHHhCCCEEEeCCEEEEEEEcCCEEEEEECCCEEEeCEEEEccCCCCCcC
Confidence 001 11 1122334566779999886 444443 222333 455799999999999998764
|
|
| >PLN02985 squalene monooxygenase | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.00012 Score=78.44 Aligned_cols=34 Identities=29% Similarity=0.346 Sum_probs=31.7
Q ss_pred CCCccEEEECCChHHHHHHHHHHhCCCcEEEEcc
Q 008860 70 HYDFDLFTIGAGSGGVRASRFAANFGASVAICEL 103 (551)
Q Consensus 70 ~~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~ 103 (551)
...+||+|||||++|+++|..|++.|++|+|+|+
T Consensus 41 ~~~~DViIVGAG~aGlalA~aLa~~G~~V~vlEr 74 (514)
T PLN02985 41 DGATDVIIVGAGVGGSALAYALAKDGRRVHVIER 74 (514)
T ss_pred CCCceEEEECCCHHHHHHHHHHHHcCCeEEEEEC
Confidence 3468999999999999999999999999999994
|
|
| >COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.00054 Score=71.48 Aligned_cols=30 Identities=27% Similarity=0.433 Sum_probs=29.0
Q ss_pred ccEEEECCChHHHHHHHHHHhCCCcEEEEc
Q 008860 73 FDLFTIGAGSGGVRASRFAANFGASVAICE 102 (551)
Q Consensus 73 ~dVvIIGgG~aGl~aA~~l~~~G~~V~liE 102 (551)
.+++|||||+.|+-.|..+++.|.+|+|||
T Consensus 174 ~~lvIiGgG~IGlE~a~~~~~LG~~VTiie 203 (454)
T COG1249 174 KSLVIVGGGYIGLEFASVFAALGSKVTVVE 203 (454)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCcEEEEe
Confidence 469999999999999999999999999999
|
|
| >PLN02529 lysine-specific histone demethylase 1 | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.00014 Score=80.09 Aligned_cols=33 Identities=30% Similarity=0.435 Sum_probs=31.0
Q ss_pred CCccEEEECCChHHHHHHHHHHhCCCcEEEEcc
Q 008860 71 YDFDLFTIGAGSGGVRASRFAANFGASVAICEL 103 (551)
Q Consensus 71 ~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~ 103 (551)
..+||+|||||++|++||..|++.|++|+|+|+
T Consensus 159 ~~~~v~viGaG~aGl~aA~~l~~~g~~v~v~E~ 191 (738)
T PLN02529 159 TEGSVIIVGAGLAGLAAARQLLSFGFKVVVLEG 191 (738)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHcCCcEEEEec
Confidence 468999999999999999999999999999993
|
|
| >PRK06370 mercuric reductase; Validated | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.0011 Score=70.44 Aligned_cols=30 Identities=30% Similarity=0.489 Sum_probs=29.0
Q ss_pred ccEEEECCChHHHHHHHHHHhCCCcEEEEc
Q 008860 73 FDLFTIGAGSGGVRASRFAANFGASVAICE 102 (551)
Q Consensus 73 ~dVvIIGgG~aGl~aA~~l~~~G~~V~liE 102 (551)
.+|+|||||+.|+.+|..|++.|.+|+|++
T Consensus 172 ~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~ 201 (463)
T PRK06370 172 EHLVIIGGGYIGLEFAQMFRRFGSEVTVIE 201 (463)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCeEEEEE
Confidence 589999999999999999999999999999
|
|
| >PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.00031 Score=77.77 Aligned_cols=91 Identities=21% Similarity=0.318 Sum_probs=67.9
Q ss_pred CCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccC-------C--CCCHHHHHHHHHHHHhcCcEEEcCcccEEEEE
Q 008860 244 KPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVL-------R--GFDEDIRDFVAEQMSLRGIEFHTEESPQAILK 314 (551)
Q Consensus 244 ~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l-------~--~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~ 314 (551)
.+++|+|||+|+.|+.+|..|++.|.+|+++++.+.+. + .++.++.+...+.+++.|++++.++.+..
T Consensus 326 ~~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v~~--- 402 (654)
T PRK12769 326 SDKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEIGGLLTFGIPAFKLDKSLLARRREIFSAMGIEFELNCEVGK--- 402 (654)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceeeecCCCccCCHHHHHHHHHHHHHCCeEEECCCEeCC---
Confidence 46799999999999999999999999999999876531 2 14566666667788899999999975521
Q ss_pred cCCceEEEEECCCeEEEeeEEEEecCcCCC
Q 008860 315 STDGSLSVKTNKGTVDGFSHVMFATGRRPN 344 (551)
Q Consensus 315 ~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~ 344 (551)
+ +.+.+. ...+|.|++|+|..+.
T Consensus 403 --~----i~~~~~-~~~~DavilAtGa~~~ 425 (654)
T PRK12769 403 --D----ISLESL-LEDYDAVFVGVGTYRS 425 (654)
T ss_pred --c----CCHHHH-HhcCCEEEEeCCCCCC
Confidence 0 111111 1368999999998653
|
|
| >PTZ00188 adrenodoxin reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.00047 Score=71.80 Aligned_cols=91 Identities=16% Similarity=0.160 Sum_probs=61.2
Q ss_pred CCCeEEEEcCcHHHHHHHHHH-HhCCCeEEEEeecCccCCC-------C---CHHHHHHHHHHHHhcCcEEEcCcccEEE
Q 008860 244 KPEKIAIVGGGYIALEFAGIF-SGLTSEVHVFIRQKKVLRG-------F---DEDIRDFVAEQMSLRGIEFHTEESPQAI 312 (551)
Q Consensus 244 ~~~~vvViG~G~~g~e~a~~l-~~~g~~Vtlv~~~~~~l~~-------~---~~~~~~~l~~~l~~~Gv~i~~~~~v~~i 312 (551)
.+++|+|||+|+.|+.+|..| ++.|.+|+++++.+.+... . ...+...+.+.+...+++++.|..|-.
T Consensus 38 ~~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~pgGLvR~GVaPdh~~~k~v~~~f~~~~~~~~v~f~gnv~VG~- 116 (506)
T PTZ00188 38 KPFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPYGLIRYGVAPDHIHVKNTYKTFDPVFLSPNYRFFGNVHVGV- 116 (506)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCCccEEEEeCCCCCccHHHHHHHHHHHHhhCCeEEEeeeEecC-
Confidence 478999999999999999965 5679999999998876421 1 123444455556667888875433211
Q ss_pred EEcCCceEEEEECCCeEEEeeEEEEecCcCCC
Q 008860 313 LKSTDGSLSVKTNKGTVDGFSHVMFATGRRPN 344 (551)
Q Consensus 313 ~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~ 344 (551)
.++.++= .-.+|.||+|+|..+.
T Consensus 117 --------Dvt~eeL-~~~YDAVIlAtGA~~l 139 (506)
T PTZ00188 117 --------DLKMEEL-RNHYNCVIFCCGASEV 139 (506)
T ss_pred --------ccCHHHH-HhcCCEEEEEcCCCCC
Confidence 0111111 2368999999998864
|
|
| >KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.00044 Score=70.27 Aligned_cols=98 Identities=18% Similarity=0.186 Sum_probs=76.9
Q ss_pred CCeEEEEcCcHHHHHHHHHHHhCCC--eEEEEeecCccCC----------CCCHHHHHHHHHHHHhcCcEEEcCcccEEE
Q 008860 245 PEKIAIVGGGYIALEFAGIFSGLTS--EVHVFIRQKKVLR----------GFDEDIRDFVAEQMSLRGIEFHTEESPQAI 312 (551)
Q Consensus 245 ~~~vvViG~G~~g~e~a~~l~~~g~--~Vtlv~~~~~~l~----------~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i 312 (551)
.++++|+|+|+.|.-++..+++.|. +++++.+...+.. .....+.....+.+++.||++++++.|+.+
T Consensus 74 ar~fvivGgG~~g~vaie~~r~~g~~~ri~l~~~~~~~pydr~~Ls~~~~~~~~~~a~r~~e~Yke~gIe~~~~t~v~~~ 153 (478)
T KOG1336|consen 74 ARHFVIVGGGPGGAVAIETLRQVGFTERIALVKREYLLPYDRARLSKFLLTVGEGLAKRTPEFYKEKGIELILGTSVVKA 153 (478)
T ss_pred cceEEEEcCCchhhhhHhhHHhhCCCcceEEEeccccCcccchhcccceeeccccccccChhhHhhcCceEEEcceeEEe
Confidence 4689999999998888889988875 6777776543211 122334445567899999999999999999
Q ss_pred EEcCCceEEEEECCCeEEEeeEEEEecCcCCCC
Q 008860 313 LKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNT 345 (551)
Q Consensus 313 ~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~~ 345 (551)
+-.. .+|.+.+|++++++.+++|||..|..
T Consensus 154 D~~~---K~l~~~~Ge~~kys~LilATGs~~~~ 183 (478)
T KOG1336|consen 154 DLAS---KTLVLGNGETLKYSKLIIATGSSAKT 183 (478)
T ss_pred eccc---cEEEeCCCceeecceEEEeecCcccc
Confidence 8765 45899999999999999999996665
|
|
| >PRK08294 phenol 2-monooxygenase; Provisional | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.0003 Score=77.37 Aligned_cols=36 Identities=17% Similarity=0.261 Sum_probs=32.5
Q ss_pred CCCCCccEEEECCChHHHHHHHHHHh-CCCcEEEEcc
Q 008860 68 PSHYDFDLFTIGAGSGGVRASRFAAN-FGASVAICEL 103 (551)
Q Consensus 68 ~~~~~~dVvIIGgG~aGl~aA~~l~~-~G~~V~liE~ 103 (551)
.|..++||+||||||+||++|..|++ .|.+|+|||+
T Consensus 28 ~~~~~~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~ 64 (634)
T PRK08294 28 DLPDEVDVLIVGCGPAGLTLAAQLSAFPDITTRIVER 64 (634)
T ss_pred cCCCCCCEEEECCCHHHHHHHHHHhcCCCCcEEEEEc
Confidence 35567999999999999999999999 5999999994
|
|
| >PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ] | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.00066 Score=52.92 Aligned_cols=29 Identities=28% Similarity=0.460 Sum_probs=28.1
Q ss_pred cEEEECCChHHHHHHHHHHhCCCcEEEEc
Q 008860 74 DLFTIGAGSGGVRASRFAANFGASVAICE 102 (551)
Q Consensus 74 dVvIIGgG~aGl~aA~~l~~~G~~V~liE 102 (551)
+|+|||||+.|+-+|..|++.|.+|+||+
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~ 29 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIE 29 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEE
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEe
Confidence 48999999999999999999999999999
|
Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A .... |
| >TIGR02053 MerA mercuric reductase | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.0012 Score=70.06 Aligned_cols=30 Identities=33% Similarity=0.452 Sum_probs=29.0
Q ss_pred ccEEEECCChHHHHHHHHHHhCCCcEEEEc
Q 008860 73 FDLFTIGAGSGGVRASRFAANFGASVAICE 102 (551)
Q Consensus 73 ~dVvIIGgG~aGl~aA~~l~~~G~~V~liE 102 (551)
.+++|||+|+.|+.+|..|++.|.+|+|++
T Consensus 167 ~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~ 196 (463)
T TIGR02053 167 ESLAVIGGGAIGVELAQAFARLGSEVTILQ 196 (463)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEE
Confidence 579999999999999999999999999999
|
This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH. |
| >PRK06753 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.00015 Score=74.84 Aligned_cols=31 Identities=32% Similarity=0.530 Sum_probs=29.4
Q ss_pred ccEEEECCChHHHHHHHHHHhCCCcEEEEcc
Q 008860 73 FDLFTIGAGSGGVRASRFAANFGASVAICEL 103 (551)
Q Consensus 73 ~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~ 103 (551)
.||+|||||++|+++|+.|++.|++|+|+|+
T Consensus 1 ~~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~ 31 (373)
T PRK06753 1 MKIAIIGAGIGGLTAAALLQEQGHEVKVFEK 31 (373)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEec
Confidence 3799999999999999999999999999994
|
|
| >PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.00058 Score=72.91 Aligned_cols=89 Identities=17% Similarity=0.233 Sum_probs=68.0
Q ss_pred CCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCCCCCHHHHHHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEE
Q 008860 245 PEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKT 324 (551)
Q Consensus 245 ~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~ 324 (551)
+++++|+|+|.+|+++|..|.+.|.+|+++++.+. +....+.+.|++.||+++.+..+.
T Consensus 16 ~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~-------~~~~~~~~~l~~~gv~~~~~~~~~-------------- 74 (480)
T PRK01438 16 GLRVVVAGLGVSGFAAADALLELGARVTVVDDGDD-------ERHRALAAILEALGATVRLGPGPT-------------- 74 (480)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCch-------hhhHHHHHHHHHcCCEEEECCCcc--------------
Confidence 57899999999999999999999999999987542 234456677888999999875442
Q ss_pred CCCeEEEeeEEEEecCcCCCCCCC-CccccCeee
Q 008860 325 NKGTVDGFSHVMFATGRRPNTKNL-GLEKVGVKM 357 (551)
Q Consensus 325 ~~G~~i~~d~vi~a~G~~p~~~~l-~l~~~gl~~ 357 (551)
....+|.||+++|..|+..++ .+++.|+++
T Consensus 75 ---~~~~~D~Vv~s~Gi~~~~~~~~~a~~~gi~v 105 (480)
T PRK01438 75 ---LPEDTDLVVTSPGWRPDAPLLAAAADAGIPV 105 (480)
T ss_pred ---ccCCCCEEEECCCcCCCCHHHHHHHHCCCee
Confidence 014589999999999998753 123445554
|
|
| >PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.0012 Score=67.88 Aligned_cols=95 Identities=21% Similarity=0.221 Sum_probs=70.3
Q ss_pred EEEEcCcHHHHHHHHHH--HhCCCeEEEEeecCcc--CC-----CCCHH-------------------------------
Q 008860 248 IAIVGGGYIALEFAGIF--SGLTSEVHVFIRQKKV--LR-----GFDED------------------------------- 287 (551)
Q Consensus 248 vvViG~G~~g~e~a~~l--~~~g~~Vtlv~~~~~~--l~-----~~~~~------------------------------- 287 (551)
|+|||+|+.|+-+|..| .+.|.+|.++++.+.. -+ ...++
T Consensus 2 viIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~~~~~~~~tW~~~~~~~~~~~~~v~~~w~~~~v~~~~~~~~~~~~~Y 81 (374)
T PF05834_consen 2 VIIVGAGPAGLSLARRLADARPGLSVLLIDPKPKPPWPNDRTWCFWEKDLGPLDSLVSHRWSGWRVYFPDGSRILIDYPY 81 (374)
T ss_pred EEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCccccccCCcccccccccccchHHHHheecCceEEEeCCCceEEcccce
Confidence 79999999999999999 7789999999876543 10 01111
Q ss_pred -------HHHHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCcCCC
Q 008860 288 -------IRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPN 344 (551)
Q Consensus 288 -------~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~ 344 (551)
+.+.+.+.+++ +..+..+++|++|+.++++ ..|.+.+|+++.++.||-|.|..+.
T Consensus 82 ~~i~~~~f~~~l~~~~~~-~~~~~~~~~V~~i~~~~~~-~~v~~~~g~~i~a~~VvDa~g~~~~ 143 (374)
T PF05834_consen 82 CMIDRADFYEFLLERAAA-GGVIRLNARVTSIEETGDG-VLVVLADGRTIRARVVVDARGPSSP 143 (374)
T ss_pred EEEEHHHHHHHHHHHhhh-CCeEEEccEEEEEEecCce-EEEEECCCCEEEeeEEEECCCcccc
Confidence 11114444553 4456677899999987775 6788999999999999999996654
|
Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process |
| >KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.00026 Score=71.88 Aligned_cols=42 Identities=29% Similarity=0.377 Sum_probs=35.8
Q ss_pred CCccEEEECCChHHHHHHHHHHhCC-CcEEEEccCCCCCCCCCCCCCCCeec
Q 008860 71 YDFDLFTIGAGSGGVRASRFAANFG-ASVAICELPFSTISSETTGGVGGTCV 121 (551)
Q Consensus 71 ~~~dVvIIGgG~aGl~aA~~l~~~G-~~V~liE~~~~~~~~~~~~~~GG~~~ 121 (551)
...+|||||||.|||+||.+|.+.| .+|+|+|. .+.+||...
T Consensus 20 ~~~kIvIIGAG~AGLaAA~rLle~gf~~~~IlEa---------~dRIGGRI~ 62 (498)
T KOG0685|consen 20 GNAKIVIIGAGIAGLAAATRLLENGFIDVLILEA---------SDRIGGRIH 62 (498)
T ss_pred CCceEEEECCchHHHHHHHHHHHhCCceEEEEEe---------ccccCceEe
Confidence 3468999999999999999999766 58999994 778898864
|
|
| >PTZ00367 squalene epoxidase; Provisional | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.00019 Score=77.44 Aligned_cols=33 Identities=24% Similarity=0.463 Sum_probs=31.1
Q ss_pred CCccEEEECCChHHHHHHHHHHhCCCcEEEEcc
Q 008860 71 YDFDLFTIGAGSGGVRASRFAANFGASVAICEL 103 (551)
Q Consensus 71 ~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~ 103 (551)
.++||+|||||++|+++|..|++.|++|+|+|+
T Consensus 32 ~~~dViIVGaGiaGlalA~aLar~G~~V~VlEr 64 (567)
T PTZ00367 32 YDYDVIIVGGSIAGPVLAKALSKQGRKVLMLER 64 (567)
T ss_pred cCccEEEECCCHHHHHHHHHHHhcCCEEEEEcc
Confidence 368999999999999999999999999999994
|
|
| >TIGR02732 zeta_caro_desat carotene 7,8-desaturase | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.00024 Score=75.47 Aligned_cols=63 Identities=19% Similarity=0.149 Sum_probs=45.9
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCcccEEEEEcC--Cc---eEEEEECCC---eEEEeeEEEEecCcCCCCCC
Q 008860 285 DEDIRDFVAEQMSLRGIEFHTEESPQAILKST--DG---SLSVKTNKG---TVDGFSHVMFATGRRPNTKN 347 (551)
Q Consensus 285 ~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~--~~---~~~V~~~~G---~~i~~d~vi~a~G~~p~~~~ 347 (551)
..-+.+.+.+.|++.|++|+++++|++|+.++ ++ +..|.+.+| +++.+|.||+|++..-...+
T Consensus 218 ~~~l~~pl~~~L~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~~v~~~~g~~~~~~~aD~VVlA~p~~~~~~L 288 (474)
T TIGR02732 218 DKYLTKPILEYIEARGGKFHLRHKVREIKYEKSSDGSTRVTGLIMSKPEGKKVIKADAYVAACDVPGIKRL 288 (474)
T ss_pred chhHHHHHHHHHHHCCCEEECCCEEEEEEEecCCCCceeEEEEEEecCCcceEEECCEEEECCChHHHHhh
Confidence 44456778899999999999999999998753 22 344556544 56899999999986433333
|
Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum. |
| >PRK06115 dihydrolipoamide dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.0019 Score=68.61 Aligned_cols=94 Identities=17% Similarity=0.162 Sum_probs=61.6
Q ss_pred eEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCCC------CCHH-----------------------------HH--
Q 008860 247 KIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRG------FDED-----------------------------IR-- 289 (551)
Q Consensus 247 ~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~~------~~~~-----------------------------~~-- 289 (551)
.++|||+|+.|+..|..+++.|.+|+++++.+.+-.. .+.. +.
T Consensus 5 DvvVIG~GpaG~~AA~~aa~~G~~V~liE~~~~~GG~c~~~gciPsK~l~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~ 84 (466)
T PRK06115 5 DVVIIGGGPGGYNAAIRAGQLGLKVACVEGRSTLGGTCLNVGCMPSKALLHASELYEAASGGEFAHLGIEVKPTLNLAQM 84 (466)
T ss_pred cEEEECCCHHHHHHHHHHHhCCCeEEEEecCCceeeeeccCcccccHHHHHHhHHHHHHhhhhhhhcCccccCccCHHHH
Confidence 6999999999999999999999999999964322110 0000 00
Q ss_pred ------------HHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEECCCe--EEEeeEEEEecCcCCC
Q 008860 290 ------------DFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTNKGT--VDGFSHVMFATGRRPN 344 (551)
Q Consensus 290 ------------~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~G~--~i~~d~vi~a~G~~p~ 344 (551)
..+...++..||+++.+. .++.. ...+.|...+|+ ++.+|.+|+|||.+|.
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~--a~~~~--~~~v~v~~~~g~~~~~~~d~lVIATGs~p~ 149 (466)
T PRK06115 85 MKQKDESVEALTKGVEFLFRKNKVDWIKGW--GRLDG--VGKVVVKAEDGSETQLEAKDIVIATGSEPT 149 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCEEEEEE--EEEcc--CCEEEEEcCCCceEEEEeCEEEEeCCCCCC
Confidence 111223344566666653 23332 222556666664 6999999999999985
|
|
| >PLN02507 glutathione reductase | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.0019 Score=69.12 Aligned_cols=95 Identities=18% Similarity=0.198 Sum_probs=64.2
Q ss_pred ccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhhccCCCcccC
Q 008860 73 FDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDESNGFGWKYG 152 (551)
Q Consensus 73 ~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~~~ 152 (551)
.+|+|||||+.|+-.|..+++.|.+|+|++. ...+ +|
T Consensus 204 k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~---------~~~~---------l~------------------------- 240 (499)
T PLN02507 204 KRAVVLGGGYIAVEFASIWRGMGATVDLFFR---------KELP---------LR------------------------- 240 (499)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCeEEEEEe---------cCCc---------Cc-------------------------
Confidence 5799999999999999999999999999992 1110 00
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEe-EEEEec--CCEEEE---cCEEEEeCeEEEcCCCCCCCCC
Q 008860 153 TEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIEG-RGKIVD--PHTVDV---DGKLYSARHILISVGGRPFIPD 225 (551)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~i~--~~~v~v---~g~~~~~d~lviAtG~~p~~p~ 225 (551)
.++ .+ +...+.+.+++.||+++.+ .+..++ ...+.+ +++++.+|.+++|+|.+|+...
T Consensus 241 ---~~d-~~-----------~~~~l~~~l~~~GI~i~~~~~V~~i~~~~~~~~v~~~~g~~i~~D~vl~a~G~~pn~~~ 304 (499)
T PLN02507 241 ---GFD-DE-----------MRAVVARNLEGRGINLHPRTNLTQLTKTEGGIKVITDHGEEFVADVVLFATGRAPNTKR 304 (499)
T ss_pred ---ccC-HH-----------HHHHHHHHHHhCCCEEEeCCEEEEEEEeCCeEEEEECCCcEEEcCEEEEeecCCCCCCC
Confidence 001 01 1122334566779999877 344443 223333 5678999999999999987653
|
|
| >TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.0012 Score=69.91 Aligned_cols=94 Identities=15% Similarity=0.199 Sum_probs=63.0
Q ss_pred ccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhhccCCCcccC
Q 008860 73 FDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDESNGFGWKYG 152 (551)
Q Consensus 73 ~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~~~ 152 (551)
.+++|||||..|+-.|..|++.|.+|+|++. ...+. +
T Consensus 167 ~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~---------~~~il---------~------------------------- 203 (450)
T TIGR01421 167 KRVVIVGAGYIAVELAGVLHGLGSETHLVIR---------HERVL---------R------------------------- 203 (450)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEec---------CCCCC---------c-------------------------
Confidence 5799999999999999999999999999992 11100 0
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEeE-EEEecC---C--EEEE-cC-EEEEeCeEEEcCCCCCCCC
Q 008860 153 TEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIEGR-GKIVDP---H--TVDV-DG-KLYSARHILISVGGRPFIP 224 (551)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~i~~---~--~v~v-~g-~~~~~d~lviAtG~~p~~p 224 (551)
.++. . +...+.+.+++.||+++.+. +..+.. . .+.+ ++ ..+.+|.+++|+|.+|+..
T Consensus 204 ---~~d~-~-----------~~~~~~~~l~~~gI~i~~~~~v~~i~~~~~~~~~v~~~~g~~~i~~D~vi~a~G~~pn~~ 268 (450)
T TIGR01421 204 ---SFDS-M-----------ISETITEEYEKEGINVHKLSKPVKVEKTVEGKLVIHFEDGKSIDDVDELIWAIGRKPNTK 268 (450)
T ss_pred ---ccCH-H-----------HHHHHHHHHHHcCCEEEcCCEEEEEEEeCCceEEEEECCCcEEEEcCEEEEeeCCCcCcc
Confidence 0010 0 11223345666799988763 333421 2 2333 45 5799999999999998865
|
The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria. |
| >TIGR01789 lycopene_cycl lycopene cyclase | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.0012 Score=67.80 Aligned_cols=94 Identities=17% Similarity=0.138 Sum_probs=64.5
Q ss_pred eEEEEcCcHHHHHHHHHHHhC--CCeEEEEeecCccCC---------CCCHHHHH-------------------------
Q 008860 247 KIAIVGGGYIALEFAGIFSGL--TSEVHVFIRQKKVLR---------GFDEDIRD------------------------- 290 (551)
Q Consensus 247 ~vvViG~G~~g~e~a~~l~~~--g~~Vtlv~~~~~~l~---------~~~~~~~~------------------------- 290 (551)
.|+|||+|..|+.+|..|.+. |.+|.++++.+.+.+ ..++....
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~~~~~tw~~~~~~~~~~~~~~~~~~v~~~W~~~~v~~~~~~~~l~ 80 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTIGGNHTWSFFDSDLSDAQHAWLADLVQTDWPGYEVRFPKYRRKLK 80 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCcccceecccccchhhhhhhhhhheEeCCCCEEECcchhhhcC
Confidence 379999999999999999987 999999998764322 11111111
Q ss_pred ---------HHHHH-HHhcCcEEEcCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCcCCCC
Q 008860 291 ---------FVAEQ-MSLRGIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNT 345 (551)
Q Consensus 291 ---------~l~~~-l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~~ 345 (551)
.+.+. +++.+..++.+++|+++. .++ |++.+|+++.+|.||.|.|..+..
T Consensus 81 ~~Y~~I~r~~f~~~l~~~l~~~i~~~~~V~~v~--~~~---v~l~dg~~~~A~~VI~A~G~~s~~ 140 (370)
T TIGR01789 81 TAYRSMTSTRFHEGLLQAFPEGVILGRKAVGLD--ADG---VDLAPGTRINARSVIDCRGFKPSA 140 (370)
T ss_pred CCceEEEHHHHHHHHHHhhcccEEecCEEEEEe--CCE---EEECCCCEEEeeEEEECCCCCCCc
Confidence 01122 222244477788888883 333 445788899999999999988643
|
This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium. |
| >TIGR02023 BchP-ChlP geranylgeranyl reductase | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.0026 Score=65.97 Aligned_cols=97 Identities=18% Similarity=0.256 Sum_probs=69.0
Q ss_pred eEEEEcCcHHHHHHHHHHHhCCCeEEEEeec-Ccc-----------CCCC------------------------------
Q 008860 247 KIAIVGGGYIALEFAGIFSGLTSEVHVFIRQ-KKV-----------LRGF------------------------------ 284 (551)
Q Consensus 247 ~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~-~~~-----------l~~~------------------------------ 284 (551)
.|+|||+|+.|+-+|..|++.|.+|.++++. +.. +..+
T Consensus 2 DVvIVGaGpAG~~aA~~La~~G~~V~l~E~~~~~~~~cg~~i~~~~l~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (388)
T TIGR02023 2 DVAVIGGGPSGATAAETLARAGIETILLERALSNIKPCGGAIPPCLIEEFDIPDSLIDRRVTQMRMISPSRVPIKVTIPS 81 (388)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEECCCCCcCcCcCCcCHhhhhhcCCchHHHhhhcceeEEEcCCCceeeeccCC
Confidence 5899999999999999999999999999986 210 0000
Q ss_pred --------CH-HHHHHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEECC------C--eEEEeeEEEEecCcCCCC
Q 008860 285 --------DE-DIRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTNK------G--TVDGFSHVMFATGRRPNT 345 (551)
Q Consensus 285 --------~~-~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~------G--~~i~~d~vi~a~G~~p~~ 345 (551)
+. .+-+.+.+...+.|++++.+ .++++..++++ +.|++.+ | .++.+|.||.|.|.....
T Consensus 82 ~~~~~~~~~r~~fd~~L~~~a~~~G~~v~~~-~v~~v~~~~~~-~~v~~~~~~~~~~~~~~~i~a~~VI~AdG~~S~v 157 (388)
T TIGR02023 82 EDGYVGMVRREVFDSYLRERAQKAGAELIHG-LFLKLERDRDG-VTLTYRTPKKGAGGEKGSVEADVVIGADGANSPV 157 (388)
T ss_pred CCCceEeeeHHHHHHHHHHHHHhCCCEEEee-EEEEEEEcCCe-EEEEEEeccccCCCcceEEEeCEEEECCCCCcHH
Confidence 00 11123455556779999765 68888776665 5666543 2 368999999999986643
|
This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ). |
| >TIGR00136 gidA glucose-inhibited division protein A | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.0025 Score=68.31 Aligned_cols=97 Identities=13% Similarity=0.178 Sum_probs=70.1
Q ss_pred eEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCcc------------------CCCC---C--------------------
Q 008860 247 KIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKV------------------LRGF---D-------------------- 285 (551)
Q Consensus 247 ~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~------------------l~~~---~-------------------- 285 (551)
.|+|||+|..|+++|..+++.|.+|.++++.... ...+ +
T Consensus 2 DViVIGaG~AGl~aA~ala~~G~~v~Lie~~~~~~g~~~c~ps~gG~a~g~l~rEidaLGG~~~~~~d~~~i~~r~ln~s 81 (617)
T TIGR00136 2 DVIVIGGGHAGCEAALAAARMGAKTLLLTLNLDTIGKCSCNPAIGGPAKGILVKEIDALGGLMGKAADKAGLQFRVLNSS 81 (617)
T ss_pred eEEEECccHHHHHHHHHHHHCCCCEEEEecccccccCCCccccccccccchhhhhhhcccchHHHHHHhhceeheecccC
Confidence 4899999999999999999999999999875211 0000 0
Q ss_pred -------------H-HHHHHHHHHHHhc-CcEEEcCcccEEEEEc-CCceEEEEECCCeEEEeeEEEEecCcCCC
Q 008860 286 -------------E-DIRDFVAEQMSLR-GIEFHTEESPQAILKS-TDGSLSVKTNKGTVDGFSHVMFATGRRPN 344 (551)
Q Consensus 286 -------------~-~~~~~l~~~l~~~-Gv~i~~~~~v~~i~~~-~~~~~~V~~~~G~~i~~d~vi~a~G~~p~ 344 (551)
+ .+...+.+.+++. |++++.+ .++++..+ ++.+..|.+.+|..+.||.||+|+|...+
T Consensus 82 kgpAV~~~RaQVDr~~y~~~L~e~Le~~pgV~Ile~-~Vv~li~e~~g~V~GV~t~~G~~I~Ad~VILATGtfL~ 155 (617)
T TIGR00136 82 KGPAVRATRAQIDKVLYRKAMRNALENQPNLSLFQG-EVEDLILEDNDEIKGVVTQDGLKFRAKAVIITTGTFLR 155 (617)
T ss_pred CCCcccccHHhCCHHHHHHHHHHHHHcCCCcEEEEe-EEEEEEEecCCcEEEEEECCCCEEECCEEEEccCcccC
Confidence 0 1112345556665 7888765 67777554 44557789999989999999999998853
|
GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137). |
| >PLN02328 lysine-specific histone demethylase 1 homolog | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.00033 Score=77.72 Aligned_cols=34 Identities=26% Similarity=0.338 Sum_probs=31.4
Q ss_pred CCCccEEEECCChHHHHHHHHHHhCCCcEEEEcc
Q 008860 70 HYDFDLFTIGAGSGGVRASRFAANFGASVAICEL 103 (551)
Q Consensus 70 ~~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~ 103 (551)
....+|+|||||++|++||+.|++.|++|+|+|+
T Consensus 236 ~~~~~v~IiGaG~aGl~aA~~L~~~g~~v~v~E~ 269 (808)
T PLN02328 236 VEPANVVVVGAGLAGLVAARQLLSMGFKVVVLEG 269 (808)
T ss_pred CCCCCEEEECcCHHHHHHHHHHHHCCCcEEEEec
Confidence 3467999999999999999999999999999994
|
|
| >KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.0011 Score=65.28 Aligned_cols=33 Identities=27% Similarity=0.317 Sum_probs=31.3
Q ss_pred CCCccEEEECCChHHHHHHHHHHhCCCcEEEEc
Q 008860 70 HYDFDLFTIGAGSGGVRASRFAANFGASVAICE 102 (551)
Q Consensus 70 ~~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE 102 (551)
...+||+|||||.+|.+.|+.|++.|.+|.+||
T Consensus 43 ~~~~DvIIVGAGV~GsaLa~~L~kdGRrVhVIE 75 (509)
T KOG1298|consen 43 DGAADVIIVGAGVAGSALAYALAKDGRRVHVIE 75 (509)
T ss_pred CCcccEEEECCcchHHHHHHHHhhCCcEEEEEe
Confidence 346899999999999999999999999999999
|
|
| >PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.00029 Score=73.96 Aligned_cols=95 Identities=16% Similarity=0.165 Sum_probs=27.4
Q ss_pred eEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccC------------C--------------------------------
Q 008860 247 KIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVL------------R-------------------------------- 282 (551)
Q Consensus 247 ~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l------------~-------------------------------- 282 (551)
.|+|||||+.|+-.|..+++.|.+|.|+++.+.+. .
T Consensus 1 DVVVvGgG~aG~~AAi~AAr~G~~VlLiE~~~~lGG~~t~~~~~~~~~~~~~~~~~~gi~~e~~~~~~~~~~~~~~~~~~ 80 (428)
T PF12831_consen 1 DVVVVGGGPAGVAAAIAAARAGAKVLLIEKGGFLGGMATSGGVSPFDGNHDEDQVIGGIFREFLNRLRARGGYPQEDRYG 80 (428)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTS-EEEE-SSSSSTGGGGGSSS-EETTEEHHHHHHHHHHHHHHHST-------------
T ss_pred CEEEECccHHHHHHHHHHHHCCCEEEEEECCccCCCcceECCcCChhhcchhhccCCCHHHHHHHHHhhhcccccccccc
Confidence 48999999999999999999999999999877531 0
Q ss_pred -----CCCHH-HHHHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEECC---CeEEEeeEEEEecCc
Q 008860 283 -----GFDED-IRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTNK---GTVDGFSHVMFATGR 341 (551)
Q Consensus 283 -----~~~~~-~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~---G~~i~~d~vi~a~G~ 341 (551)
.++++ +...+.+.+++.|+++++++.|.++..+++.+..|.+.+ ..++.++.+|-|||.
T Consensus 81 ~~~~~~~~~~~~~~~l~~~l~e~gv~v~~~t~v~~v~~~~~~i~~V~~~~~~g~~~i~A~~~IDaTG~ 148 (428)
T PF12831_consen 81 WVSNVPFDPEVFKAVLDEMLAEAGVEVLLGTRVVDVIRDGGRITGVIVETKSGRKEIRAKVFIDATGD 148 (428)
T ss_dssp --------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 01111 112255666788999999999999998876655566644 347999999999994
|
|
| >PRK14727 putative mercuric reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.003 Score=67.35 Aligned_cols=93 Identities=18% Similarity=0.243 Sum_probs=62.8
Q ss_pred ccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhhccCCCcccC
Q 008860 73 FDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDESNGFGWKYG 152 (551)
Q Consensus 73 ~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~~~ 152 (551)
.+++|||+|+.|+-.|..|++.|.+|+|++ ...+ +|
T Consensus 189 k~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~----------~~~~---------l~------------------------- 224 (479)
T PRK14727 189 ASLTVIGSSVVAAEIAQAYARLGSRVTILA----------RSTL---------LF------------------------- 224 (479)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCEEEEEE----------cCCC---------CC-------------------------
Confidence 579999999999999999999999999998 2110 00
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEe-EEEEec--CCEEEE--cCEEEEeCeEEEcCCCCCCCC
Q 008860 153 TEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIEG-RGKIVD--PHTVDV--DGKLYSARHILISVGGRPFIP 224 (551)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~i~--~~~v~v--~g~~~~~d~lviAtG~~p~~p 224 (551)
..+ + .+...+.+.+++.||+++.+ .+..+. ...+.+ ++.++.+|.+++|+|..|+..
T Consensus 225 ---~~d-~-----------~~~~~l~~~L~~~GV~i~~~~~V~~i~~~~~~~~v~~~~g~i~aD~VlvA~G~~pn~~ 286 (479)
T PRK14727 225 ---RED-P-----------LLGETLTACFEKEGIEVLNNTQASLVEHDDNGFVLTTGHGELRAEKLLISTGRHANTH 286 (479)
T ss_pred ---cch-H-----------HHHHHHHHHHHhCCCEEEcCcEEEEEEEeCCEEEEEEcCCeEEeCEEEEccCCCCCcc
Confidence 001 0 11122334566779998876 343332 233333 445689999999999998764
|
|
| >PRK07818 dihydrolipoamide dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.0023 Score=68.10 Aligned_cols=30 Identities=30% Similarity=0.475 Sum_probs=28.9
Q ss_pred ccEEEECCChHHHHHHHHHHhCCCcEEEEc
Q 008860 73 FDLFTIGAGSGGVRASRFAANFGASVAICE 102 (551)
Q Consensus 73 ~dVvIIGgG~aGl~aA~~l~~~G~~V~liE 102 (551)
.+|+|||||+.|+.+|..|++.|.+|+|+|
T Consensus 173 ~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~ 202 (466)
T PRK07818 173 KSIVIAGAGAIGMEFAYVLKNYGVDVTIVE 202 (466)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCeEEEEe
Confidence 479999999999999999999999999999
|
|
| >KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.00091 Score=67.64 Aligned_cols=32 Identities=31% Similarity=0.535 Sum_probs=30.3
Q ss_pred CccEEEECCChHHHHHHHHHHhCCCcEEEEcc
Q 008860 72 DFDLFTIGAGSGGVRASRFAANFGASVAICEL 103 (551)
Q Consensus 72 ~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~ 103 (551)
.|||||||||.||..||..+++.|.+.+|+..
T Consensus 28 ~~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~ 59 (679)
T KOG2311|consen 28 TYDVVVIGGGHAGCEAAAAAARLGARTLLLTH 59 (679)
T ss_pred cccEEEECCCccchHHHHHHHhcCCceEEeec
Confidence 59999999999999999999999999999983
|
|
| >PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ] | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.00023 Score=70.81 Aligned_cols=65 Identities=15% Similarity=0.256 Sum_probs=42.9
Q ss_pred HHHHHHHHHhcCcEEEcCcccEEEEEc--CCceEEEEE--CCCe----EEEeeEEEEecCcCCCCCCCCccccCe
Q 008860 289 RDFVAEQMSLRGIEFHTEESPQAILKS--TDGSLSVKT--NKGT----VDGFSHVMFATGRRPNTKNLGLEKVGV 355 (551)
Q Consensus 289 ~~~l~~~l~~~Gv~i~~~~~v~~i~~~--~~~~~~V~~--~~G~----~i~~d~vi~a~G~~p~~~~l~l~~~gl 355 (551)
...+...+++.+++++.++.|++|..+ ++....|++ .++. .+.++.||+|.|.--.+.+ |..+|+
T Consensus 196 ~~~L~~a~~~~n~~l~~~~~V~~i~~~~~~~~a~gV~~~~~~~~~~~~~~~ak~VIlaAGai~Tp~L--Ll~SGi 268 (296)
T PF00732_consen 196 TTYLPPALKRPNLTLLTNARVTRIIFDGDGGRATGVEYVDNDGGVQRRIVAAKEVILAAGAIGTPRL--LLRSGI 268 (296)
T ss_dssp HHHHHHHTTTTTEEEEESEEEEEEEEETTSTEEEEEEEEETTTSEEEEEEEEEEEEE-SHHHHHHHH--HHHTTE
T ss_pred hcccchhhccCCccEEcCcEEEEEeeeccccceeeeeeeecCCcceeeeccceeEEeccCCCCChhh--hccccc
Confidence 445666666669999999999999554 444444544 4443 4678999999997555444 444455
|
These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A .... |
| >PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.00089 Score=72.93 Aligned_cols=90 Identities=19% Similarity=0.245 Sum_probs=65.9
Q ss_pred CCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccC-------C--CCCHHHHHHHHHHHHhcCcEEEcCccc-EEEE
Q 008860 244 KPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVL-------R--GFDEDIRDFVAEQMSLRGIEFHTEESP-QAIL 313 (551)
Q Consensus 244 ~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l-------~--~~~~~~~~~l~~~l~~~Gv~i~~~~~v-~~i~ 313 (551)
.+++|+|||+|++|+.+|..|++.|.+|+++++.+.+. + .++.++.+.-.+.+++.|++++.++.+ .++.
T Consensus 136 ~g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~GG~l~~gip~~~~~~~~~~~~l~~~~~~Gv~~~~~~~~~~~~~ 215 (564)
T PRK12771 136 TGKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLGGMMRYGIPAYRLPREVLDAEIQRILDLGVEVRLGVRVGEDIT 215 (564)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCeeeecCCCccCCHHHHHHHHHHHHHCCCEEEeCCEECCcCC
Confidence 46899999999999999999999999999999766432 1 134555555566778899999988654 2221
Q ss_pred EcCCceEEEEECCCeEEEeeEEEEecCcCCC
Q 008860 314 KSTDGSLSVKTNKGTVDGFSHVMFATGRRPN 344 (551)
Q Consensus 314 ~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~ 344 (551)
.+. + ...+|.|++|+|..+.
T Consensus 216 ~~~-------~----~~~~D~Vi~AtG~~~~ 235 (564)
T PRK12771 216 LEQ-------L----EGEFDAVFVAIGAQLG 235 (564)
T ss_pred HHH-------H----HhhCCEEEEeeCCCCC
Confidence 110 0 1247999999998754
|
|
| >PRK13984 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.00092 Score=73.53 Aligned_cols=90 Identities=21% Similarity=0.217 Sum_probs=67.0
Q ss_pred CCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccC-------CC--CCHHHHHHHHHHHHhcCcEEEcCcccEEEEE
Q 008860 244 KPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVL-------RG--FDEDIRDFVAEQMSLRGIEFHTEESPQAILK 314 (551)
Q Consensus 244 ~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l-------~~--~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~ 314 (551)
..++++|||+|+.|+.+|..|.+.|.+|+++++.+... +. +..++.....+.+++.|++++.++.|..-
T Consensus 282 ~~~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~~~gG~~~~~i~~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~~-- 359 (604)
T PRK13984 282 KNKKVAIVGSGPAGLSAAYFLATMGYEVTVYESLSKPGGVMRYGIPSYRLPDEALDKDIAFIEALGVKIHLNTRVGKD-- 359 (604)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceEeecCCcccCCHHHHHHHHHHHHHCCcEEECCCEeCCc--
Confidence 46789999999999999999999999999998876531 11 34455555567888999999999766320
Q ss_pred cCCceEEEEECCCeEEEeeEEEEecCcCC
Q 008860 315 STDGSLSVKTNKGTVDGFSHVMFATGRRP 343 (551)
Q Consensus 315 ~~~~~~~V~~~~G~~i~~d~vi~a~G~~p 343 (551)
+...+. ...+|.||+|+|..+
T Consensus 360 -------~~~~~~-~~~yD~vilAtGa~~ 380 (604)
T PRK13984 360 -------IPLEEL-REKHDAVFLSTGFTL 380 (604)
T ss_pred -------CCHHHH-HhcCCEEEEEcCcCC
Confidence 111111 257999999999864
|
|
| >PF13454 NAD_binding_9: FAD-NAD(P)-binding | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.0037 Score=55.70 Aligned_cols=41 Identities=29% Similarity=0.375 Sum_probs=33.8
Q ss_pred CcEEE-cCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCc
Q 008860 300 GIEFH-TEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGR 341 (551)
Q Consensus 300 Gv~i~-~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~ 341 (551)
|+++. ...+|++|...+++ ..|.+.+|..+.+|.||+|+|.
T Consensus 114 ~i~v~~~~~~V~~i~~~~~~-~~v~~~~g~~~~~d~VvLa~Gh 155 (156)
T PF13454_consen 114 GITVRHVRAEVVDIRRDDDG-YRVVTADGQSIRADAVVLATGH 155 (156)
T ss_pred CcEEEEEeeEEEEEEEcCCc-EEEEECCCCEEEeCEEEECCCC
Confidence 55543 35589999988877 7889999999999999999996
|
|
| >PRK07846 mycothione reductase; Reviewed | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.0033 Score=66.48 Aligned_cols=30 Identities=17% Similarity=0.280 Sum_probs=29.0
Q ss_pred ccEEEECCChHHHHHHHHHHhCCCcEEEEc
Q 008860 73 FDLFTIGAGSGGVRASRFAANFGASVAICE 102 (551)
Q Consensus 73 ~dVvIIGgG~aGl~aA~~l~~~G~~V~liE 102 (551)
.+++|||||+.|+.+|..|++.|.+|+|++
T Consensus 167 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~ 196 (451)
T PRK07846 167 ESLVIVGGGFIAAEFAHVFSALGVRVTVVN 196 (451)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEE
Confidence 589999999999999999999999999999
|
|
| >KOG2852 consensus Possible oxidoreductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.0029 Score=60.10 Aligned_cols=34 Identities=18% Similarity=0.287 Sum_probs=30.5
Q ss_pred CCCCccEEEECCChHHHHHHHHHHhCC------CcEEEEc
Q 008860 69 SHYDFDLFTIGAGSGGVRASRFAANFG------ASVAICE 102 (551)
Q Consensus 69 ~~~~~dVvIIGgG~aGl~aA~~l~~~G------~~V~liE 102 (551)
+.+..+|+|+|||+.|..+|+.|++++ ..|+|||
T Consensus 7 ~~nsk~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifE 46 (380)
T KOG2852|consen 7 EGNSKKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFE 46 (380)
T ss_pred cCCceEEEEECCCceeeeeehhhhcCCccCCCceeEEEEe
Confidence 444578999999999999999999976 7899999
|
|
| >PRK13748 putative mercuric reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0034 Score=68.47 Aligned_cols=93 Identities=17% Similarity=0.215 Sum_probs=63.0
Q ss_pred ccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhhccCCCcccC
Q 008860 73 FDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDESNGFGWKYG 152 (551)
Q Consensus 73 ~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~~~ 152 (551)
.+++|||||+.|+-.|..|++.|.+|+||+ +..+ +|
T Consensus 271 ~~vvViGgG~ig~E~A~~l~~~g~~Vtli~----------~~~~---------l~------------------------- 306 (561)
T PRK13748 271 ERLAVIGSSVVALELAQAFARLGSKVTILA----------RSTL---------FF------------------------- 306 (561)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCEEEEEe----------cCcc---------cc-------------------------
Confidence 579999999999999999999999999999 2110 00
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEe-EEEEec--CCEEEE--cCEEEEeCeEEEcCCCCCCCC
Q 008860 153 TEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIEG-RGKIVD--PHTVDV--DGKLYSARHILISVGGRPFIP 224 (551)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~i~--~~~v~v--~g~~~~~d~lviAtG~~p~~p 224 (551)
..+ .. +...+.+.+++.||+++.+ .+..+. ...+.+ ++..+.+|.+++|+|.+|+..
T Consensus 307 ---~~d-~~-----------~~~~l~~~l~~~gI~i~~~~~v~~i~~~~~~~~v~~~~~~i~~D~vi~a~G~~pn~~ 368 (561)
T PRK13748 307 ---RED-PA-----------IGEAVTAAFRAEGIEVLEHTQASQVAHVDGEFVLTTGHGELRADKLLVATGRAPNTR 368 (561)
T ss_pred ---ccC-HH-----------HHHHHHHHHHHCCCEEEcCCEEEEEEecCCEEEEEecCCeEEeCEEEEccCCCcCCC
Confidence 001 00 1122334566779998876 344442 223333 445799999999999998764
|
|
| >TIGR02462 pyranose_ox pyranose oxidase | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.00045 Score=73.70 Aligned_cols=31 Identities=32% Similarity=0.647 Sum_probs=29.8
Q ss_pred ccEEEECCChHHHHHHHHHHhCCCcEEEEcc
Q 008860 73 FDLFTIGAGSGGVRASRFAANFGASVAICEL 103 (551)
Q Consensus 73 ~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~ 103 (551)
|||+|||+|++|+.+|..|++.|++|++||+
T Consensus 1 ~dv~ivg~Gp~G~~~a~~l~~~g~~v~~~e~ 31 (544)
T TIGR02462 1 YDVFIAGSGPIGCTYARLCVDAGLKVAMVEI 31 (544)
T ss_pred CcEEEECCchHHHHHHHHHHHCCCeEEEEec
Confidence 6999999999999999999999999999993
|
Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation. |
| >PTZ00052 thioredoxin reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.0031 Score=67.57 Aligned_cols=93 Identities=18% Similarity=0.208 Sum_probs=62.7
Q ss_pred ccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhhccCCCcccC
Q 008860 73 FDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDESNGFGWKYG 152 (551)
Q Consensus 73 ~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~~~ 152 (551)
.+++|||||+.|+-.|..|++.|.+|+|++ ...+. +
T Consensus 183 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~----------~~~~l---------~------------------------- 218 (499)
T PTZ00052 183 GKTLIVGASYIGLETAGFLNELGFDVTVAV----------RSIPL---------R------------------------- 218 (499)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEE----------cCccc---------c-------------------------
Confidence 479999999999999999999999999998 21100 0
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEeE-EEEec--CC--EEEE-cCEEEEeCeEEEcCCCCCCCC
Q 008860 153 TEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIEGR-GKIVD--PH--TVDV-DGKLYSARHILISVGGRPFIP 224 (551)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~i~--~~--~v~v-~g~~~~~d~lviAtG~~p~~p 224 (551)
..+.. +...+.+.+++.||+++.+. +..+. .. .+.+ +++.+.+|.|++|+|.+|+..
T Consensus 219 ---~~d~~------------~~~~l~~~l~~~GV~i~~~~~v~~v~~~~~~~~v~~~~g~~i~~D~vl~a~G~~pn~~ 281 (499)
T PTZ00052 219 ---GFDRQ------------CSEKVVEYMKEQGTLFLEGVVPINIEKMDDKIKVLFSDGTTELFDTVLYATGRKPDIK 281 (499)
T ss_pred ---cCCHH------------HHHHHHHHHHHcCCEEEcCCeEEEEEEcCCeEEEEECCCCEEEcCEEEEeeCCCCCcc
Confidence 00100 11223345667799988773 22232 12 2333 577889999999999998765
|
|
| >PTZ00058 glutathione reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.0025 Score=68.88 Aligned_cols=31 Identities=19% Similarity=0.144 Sum_probs=29.3
Q ss_pred CccEEEECCChHHHHHHHHHHhCCCcEEEEc
Q 008860 72 DFDLFTIGAGSGGVRASRFAANFGASVAICE 102 (551)
Q Consensus 72 ~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE 102 (551)
..+|+|||||..|+..|..+++.|.+|+|++
T Consensus 237 pk~VvIIGgG~iGlE~A~~l~~~G~~Vtli~ 267 (561)
T PTZ00058 237 AKRIGIAGSGYIAVELINVVNRLGAESYIFA 267 (561)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCcEEEEE
Confidence 3579999999999999999999999999999
|
|
| >PLN02487 zeta-carotene desaturase | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.00052 Score=73.97 Aligned_cols=59 Identities=20% Similarity=0.181 Sum_probs=47.1
Q ss_pred CCHHHHHHHHHHHHhcCcEEEcCcccEEEEEcC--Cc---eEEEEE---CCCeEEEeeEEEEecCcC
Q 008860 284 FDEDIRDFVAEQMSLRGIEFHTEESPQAILKST--DG---SLSVKT---NKGTVDGFSHVMFATGRR 342 (551)
Q Consensus 284 ~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~--~~---~~~V~~---~~G~~i~~d~vi~a~G~~ 342 (551)
+...+.+.+.+.++++|++|+++++|++|+.+. ++ +..|++ .+++.+.+|.||+|++..
T Consensus 293 ~~~~l~~pl~~~L~~~Gg~V~l~~~V~~I~~~~~~~g~~~v~gv~~~~~~~~~~~~aD~VV~A~p~~ 359 (569)
T PLN02487 293 PDVRLSGPIAKYITDRGGRFHLRWGCREILYDKSPDGETYVTGLKVSKATEKEIVKADAYVAACDVP 359 (569)
T ss_pred chHHHHHHHHHHHHHcCCEEEeCCceEEEEEecCCCCceeEEEEEEecCCCceEEECCEEEECCCHH
Confidence 455688899999999999999999999998863 22 355666 344568999999999874
|
|
| >TIGR03219 salicylate_mono salicylate 1-monooxygenase | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.00061 Score=71.29 Aligned_cols=30 Identities=23% Similarity=0.298 Sum_probs=28.2
Q ss_pred cEEEECCChHHHHHHHHHHhCC-CcEEEEcc
Q 008860 74 DLFTIGAGSGGVRASRFAANFG-ASVAICEL 103 (551)
Q Consensus 74 dVvIIGgG~aGl~aA~~l~~~G-~~V~liE~ 103 (551)
+|+|||||++||++|..|++.| .+|+|+|+
T Consensus 2 ~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er 32 (414)
T TIGR03219 2 RVAIIGGGIAGVALALNLCKHSHLNVQLFEA 32 (414)
T ss_pred eEEEECCCHHHHHHHHHHHhcCCCCEEEEec
Confidence 6999999999999999999988 59999994
|
Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway. |
| >TIGR03452 mycothione_red mycothione reductase | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.003 Score=66.86 Aligned_cols=30 Identities=20% Similarity=0.306 Sum_probs=29.0
Q ss_pred ccEEEECCChHHHHHHHHHHhCCCcEEEEc
Q 008860 73 FDLFTIGAGSGGVRASRFAANFGASVAICE 102 (551)
Q Consensus 73 ~dVvIIGgG~aGl~aA~~l~~~G~~V~liE 102 (551)
.+++|||||+.|+..|..|++.|.+|+||+
T Consensus 170 k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~ 199 (452)
T TIGR03452 170 ESLVIVGGGYIAAEFAHVFSALGTRVTIVN 199 (452)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEE
Confidence 579999999999999999999999999999
|
Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate. |
| >PRK02106 choline dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.00053 Score=74.64 Aligned_cols=34 Identities=29% Similarity=0.409 Sum_probs=31.5
Q ss_pred CCCccEEEECCChHHHHHHHHHHh-CCCcEEEEcc
Q 008860 70 HYDFDLFTIGAGSGGVRASRFAAN-FGASVAICEL 103 (551)
Q Consensus 70 ~~~~dVvIIGgG~aGl~aA~~l~~-~G~~V~liE~ 103 (551)
...||+||||||++|+.+|.+|++ .|++|+|||+
T Consensus 3 ~~~~D~iIVG~G~aG~vvA~rLae~~g~~VlvlEa 37 (560)
T PRK02106 3 TMEYDYIIIGAGSAGCVLANRLSEDPDVSVLLLEA 37 (560)
T ss_pred CCcCcEEEECCcHHHHHHHHHHHhCCCCeEEEecC
Confidence 346999999999999999999999 8999999994
|
|
| >TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.0043 Score=66.11 Aligned_cols=30 Identities=20% Similarity=0.295 Sum_probs=28.7
Q ss_pred ccEEEECCChHHHHHHHHHHhCCCcEEEEc
Q 008860 73 FDLFTIGAGSGGVRASRFAANFGASVAICE 102 (551)
Q Consensus 73 ~dVvIIGgG~aGl~aA~~l~~~G~~V~liE 102 (551)
.+++|||||+.|+-+|..|++.|.+|+|++
T Consensus 181 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~ 210 (484)
T TIGR01438 181 GKTLVVGASYVALECAGFLAGIGLDVTVMV 210 (484)
T ss_pred CCEEEECCCHHHHHHHHHHHHhCCcEEEEE
Confidence 479999999999999999999999999998
|
This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity. |
| >TIGR01423 trypano_reduc trypanothione-disulfide reductase | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.0028 Score=67.47 Aligned_cols=94 Identities=20% Similarity=0.268 Sum_probs=61.1
Q ss_pred ccEEEECCChHHHHHHHHHHh---CCCcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhhccCCCc
Q 008860 73 FDLFTIGAGSGGVRASRFAAN---FGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDESNGFGW 149 (551)
Q Consensus 73 ~dVvIIGgG~aGl~aA~~l~~---~G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~ 149 (551)
.+++|||||+.|+..|..++. .|.+|+|+|. ...+. |
T Consensus 188 ~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~---------~~~il---------~---------------------- 227 (486)
T TIGR01423 188 RRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYR---------NNMIL---------R---------------------- 227 (486)
T ss_pred CeEEEECCCHHHHHHHHHHHHhccCCCeEEEEec---------CCccc---------c----------------------
Confidence 579999999999999976655 4999999992 11100 0
Q ss_pred ccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEeE-EEEec---CC--EEEE-cCEEEEeCeEEEcCCCCCC
Q 008860 150 KYGTEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIEGR-GKIVD---PH--TVDV-DGKLYSARHILISVGGRPF 222 (551)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~i~---~~--~v~v-~g~~~~~d~lviAtG~~p~ 222 (551)
..+ + .+...+.+.+++.||+++.+. +..+. .. .+.+ ++..+.+|.+++|+|.+|+
T Consensus 228 ------~~d-~-----------~~~~~l~~~L~~~GI~i~~~~~v~~i~~~~~~~~~v~~~~g~~i~~D~vl~a~G~~Pn 289 (486)
T TIGR01423 228 ------GFD-S-----------TLRKELTKQLRANGINIMTNENPAKVTLNADGSKHVTFESGKTLDVDVVMMAIGRVPR 289 (486)
T ss_pred ------ccC-H-----------HHHHHHHHHHHHcCCEEEcCCEEEEEEEcCCceEEEEEcCCCEEEcCEEEEeeCCCcC
Confidence 011 1 111223344566799988864 33343 12 2333 5678999999999999887
Q ss_pred CC
Q 008860 223 IP 224 (551)
Q Consensus 223 ~p 224 (551)
..
T Consensus 290 ~~ 291 (486)
T TIGR01423 290 TQ 291 (486)
T ss_pred cc
Confidence 54
|
Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase. |
| >TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.0042 Score=71.99 Aligned_cols=101 Identities=12% Similarity=0.048 Sum_probs=69.7
Q ss_pred CCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCCC----------C-CHHHHHHHHHHHHhc-CcEEEcCcccEEE
Q 008860 245 PEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRG----------F-DEDIRDFVAEQMSLR-GIEFHTEESPQAI 312 (551)
Q Consensus 245 ~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~~----------~-~~~~~~~l~~~l~~~-Gv~i~~~~~v~~i 312 (551)
..+|+|||+|+.|+..|..+.+.|.+|++++..+.+... . ..++...+.+.+++. +++++.++.|..+
T Consensus 163 ~~dVvIIGaGPAGLaAA~~aar~G~~V~liD~~~~~GG~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~v~v~~~t~V~~i 242 (985)
T TIGR01372 163 HCDVLVVGAGPAGLAAALAAARAGARVILVDEQPEAGGSLLSEAETIDGKPAADWAAATVAELTAMPEVTLLPRTTAFGY 242 (985)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCeeeccccccCCccHHHHHHHHHHHHhcCCCcEEEcCCEEEEE
Confidence 467999999999999999999999999999987644211 1 123334455556655 5999999988887
Q ss_pred EEcCCceEEEE-E--------C----CC-eEEEeeEEEEecCcCCCCC
Q 008860 313 LKSTDGSLSVK-T--------N----KG-TVDGFSHVMFATGRRPNTK 346 (551)
Q Consensus 313 ~~~~~~~~~V~-~--------~----~G-~~i~~d~vi~a~G~~p~~~ 346 (551)
.... ....+. . . +. .++.+|.||+|||..+...
T Consensus 243 ~~~~-~v~~v~~~~~~~~~~~~~~~~~~~~~i~a~~VILATGa~~r~~ 289 (985)
T TIGR01372 243 YDHN-TVGALERVTDHLDAPPKGVPRERLWRIRAKRVVLATGAHERPL 289 (985)
T ss_pred ecCC-eEEEEEEeeeccccccCCccccceEEEEcCEEEEcCCCCCcCC
Confidence 5321 111111 0 0 11 1588999999999987654
|
This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms |
| >PRK06292 dihydrolipoamide dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.0069 Score=64.34 Aligned_cols=30 Identities=27% Similarity=0.414 Sum_probs=28.9
Q ss_pred ccEEEECCChHHHHHHHHHHhCCCcEEEEc
Q 008860 73 FDLFTIGAGSGGVRASRFAANFGASVAICE 102 (551)
Q Consensus 73 ~dVvIIGgG~aGl~aA~~l~~~G~~V~liE 102 (551)
.+++|||+|+.|+..|..|++.|.+|++++
T Consensus 170 k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~ 199 (460)
T PRK06292 170 KSLAVIGGGVIGLELGQALSRLGVKVTVFE 199 (460)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEe
Confidence 579999999999999999999999999999
|
|
| >TIGR02028 ChlP geranylgeranyl reductase | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.0069 Score=62.94 Aligned_cols=98 Identities=14% Similarity=0.215 Sum_probs=65.7
Q ss_pred eEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCC------------C--CCH--------------------------
Q 008860 247 KIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLR------------G--FDE-------------------------- 286 (551)
Q Consensus 247 ~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~------------~--~~~-------------------------- 286 (551)
+|+|||+|+.|+-+|..|++.|.+|.++++...... . +.+
T Consensus 2 ~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~~~~~~cg~~i~~~~l~~~g~~~~~~~~~i~~~~~~~p~~~~~~~~~~~ 81 (398)
T TIGR02028 2 RVAVVGGGPAGASAAETLASAGIQTFLLERKPDNAKPCGGAIPLCMVDEFALPRDIIDRRVTKMKMISPSNIAVDIGRTL 81 (398)
T ss_pred eEEEECCcHHHHHHHHHHHhCCCcEEEEecCCCCCCCccccccHhhHhhccCchhHHHhhhceeEEecCCceEEEeccCC
Confidence 689999999999999999999999999997643100 0 000
Q ss_pred ------------HHHHHHHHHHHhcCcEEEcCcccEEEEEc--CCceEEEEE--CC-----C--eEEEeeEEEEecCcCC
Q 008860 287 ------------DIRDFVAEQMSLRGIEFHTEESPQAILKS--TDGSLSVKT--NK-----G--TVDGFSHVMFATGRRP 343 (551)
Q Consensus 287 ------------~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~--~~~~~~V~~--~~-----G--~~i~~d~vi~a~G~~p 343 (551)
.+-+.+.+...+.|++++.++ +.++... .+....|++ .+ | .++.++.||.|.|..+
T Consensus 82 ~~~~~~~~v~R~~~d~~L~~~a~~~G~~v~~~~-~~~i~~~~~~~~~~~v~~~~~~~~~~~g~~~~i~a~~VIgADG~~S 160 (398)
T TIGR02028 82 KEHEYIGMLRREVLDSFLRRRAADAGATLINGL-VTKLSLPADADDPYTLHYISSDSGGPSGTRCTLEVDAVIGADGANS 160 (398)
T ss_pred CCCCceeeeeHHHHHHHHHHHHHHCCcEEEcce-EEEEEeccCCCceEEEEEeeccccccCCCccEEEeCEEEECCCcch
Confidence 011124455667899998774 6666431 222244443 22 3 3689999999999877
Q ss_pred CC
Q 008860 344 NT 345 (551)
Q Consensus 344 ~~ 345 (551)
..
T Consensus 161 ~v 162 (398)
T TIGR02028 161 RV 162 (398)
T ss_pred HH
Confidence 54
|
This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll. |
| >TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.00069 Score=69.87 Aligned_cols=29 Identities=31% Similarity=0.433 Sum_probs=28.6
Q ss_pred cEEEECCChHHHHHHHHHHhCCCcEEEEc
Q 008860 74 DLFTIGAGSGGVRASRFAANFGASVAICE 102 (551)
Q Consensus 74 dVvIIGgG~aGl~aA~~l~~~G~~V~liE 102 (551)
||+|||||++|+.+|..|++.|++|+|||
T Consensus 2 ~VvVIGgGlAGleaA~~LAr~G~~V~LiE 30 (433)
T TIGR00137 2 PVHVIGGGLAGSEAAWQLAQAGVPVILYE 30 (433)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCcEEEEe
Confidence 79999999999999999999999999999
|
This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO. |
| >PLN03000 amine oxidase | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.00093 Score=74.30 Aligned_cols=32 Identities=31% Similarity=0.465 Sum_probs=30.4
Q ss_pred CccEEEECCChHHHHHHHHHHhCCCcEEEEcc
Q 008860 72 DFDLFTIGAGSGGVRASRFAANFGASVAICEL 103 (551)
Q Consensus 72 ~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~ 103 (551)
..||+|||||++|+.+|..|++.|++|+|+|+
T Consensus 184 ~~~VvIIGaG~aGL~aA~~L~~~G~~V~VlE~ 215 (881)
T PLN03000 184 KSSVVIVGAGLSGLAAARQLMRFGFKVTVLEG 215 (881)
T ss_pred CCCEEEECccHHHHHHHHHHHHCCCcEEEEEc
Confidence 57999999999999999999999999999993
|
|
| >PLN02976 amine oxidase | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.001 Score=76.67 Aligned_cols=44 Identities=30% Similarity=0.448 Sum_probs=37.4
Q ss_pred CCCCccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCeec
Q 008860 69 SHYDFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCV 121 (551)
Q Consensus 69 ~~~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~~ 121 (551)
....+||+|||||++|+++|+.|++.|++|+|+|+ ...+||.+.
T Consensus 690 ~~~~~dV~IIGAG~AGLaAA~~L~~~G~~V~VlEa---------~~~vGGri~ 733 (1713)
T PLN02976 690 SVDRKKIIVVGAGPAGLTAARHLQRQGFSVTVLEA---------RSRIGGRVY 733 (1713)
T ss_pred cCCCCcEEEECchHHHHHHHHHHHHCCCcEEEEee---------ccCCCCcee
Confidence 34468999999999999999999999999999993 455777763
|
|
| >COG3573 Predicted oxidoreductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.0013 Score=63.63 Aligned_cols=42 Identities=31% Similarity=0.461 Sum_probs=35.5
Q ss_pred CccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCee
Q 008860 72 DFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTC 120 (551)
Q Consensus 72 ~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~ 120 (551)
.+||+|||+|.|||-||.+|+..|++|+|+|. +-...+||+.
T Consensus 5 ~~dvivvgaglaglvaa~elA~aG~~V~ildQ-------EgeqnlGGQA 46 (552)
T COG3573 5 TADVIVVGAGLAGLVAAAELADAGKRVLILDQ-------EGEQNLGGQA 46 (552)
T ss_pred cccEEEECccHHHHHHHHHHHhcCceEEEEcc-------ccccccccee
Confidence 58999999999999999999999999999992 2244566664
|
|
| >KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.0092 Score=54.66 Aligned_cols=100 Identities=20% Similarity=0.159 Sum_probs=72.7
Q ss_pred CCeEEEEcCcHHHHHHHHHHHhCCCeEEEEe--------------------ecCccCCC-CCHHHHHHHHHHHHhcCcEE
Q 008860 245 PEKIAIVGGGYIALEFAGIFSGLTSEVHVFI--------------------RQKKVLRG-FDEDIRDFVAEQMSLRGIEF 303 (551)
Q Consensus 245 ~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~--------------------~~~~~l~~-~~~~~~~~l~~~l~~~Gv~i 303 (551)
..+|+|||+|+.+--.|-++.+...+-.+++ .-+.+... ..+++.+.+.++-++.|.++
T Consensus 8 ~e~v~IiGSGPAa~tAAiYaaraelkPllfEG~~~~~i~pGGQLtTTT~veNfPGFPdgi~G~~l~d~mrkqs~r~Gt~i 87 (322)
T KOG0404|consen 8 NENVVIIGSGPAAHTAAIYAARAELKPLLFEGMMANGIAPGGQLTTTTDVENFPGFPDGITGPELMDKMRKQSERFGTEI 87 (322)
T ss_pred eeeEEEEccCchHHHHHHHHhhcccCceEEeeeeccCcCCCceeeeeeccccCCCCCcccccHHHHHHHHHHHHhhccee
Confidence 3589999999999999988887644433333 22222222 56788899999999999999
Q ss_pred EcCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCcCCCCCC
Q 008860 304 HTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNTKN 347 (551)
Q Consensus 304 ~~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~~~~ 347 (551)
+.. .|.+++....- ..+.++ .+.+.+|.||+|||.....-.
T Consensus 88 ~tE-tVskv~~sskp-F~l~td-~~~v~~~avI~atGAsAkRl~ 128 (322)
T KOG0404|consen 88 ITE-TVSKVDLSSKP-FKLWTD-ARPVTADAVILATGASAKRLH 128 (322)
T ss_pred eee-ehhhccccCCC-eEEEec-CCceeeeeEEEecccceeeee
Confidence 987 78888765543 556654 446999999999998765543
|
|
| >KOG2853 consensus Possible oxidoreductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.0011 Score=64.39 Aligned_cols=51 Identities=29% Similarity=0.455 Sum_probs=42.3
Q ss_pred CCccEEEECCChHHHHHHHHHHh----CCCcEEEEccCCCCCCCCCCCCCCCeec
Q 008860 71 YDFDLFTIGAGSGGVRASRFAAN----FGASVAICELPFSTISSETTGGVGGTCV 121 (551)
Q Consensus 71 ~~~dVvIIGgG~aGl~aA~~l~~----~G~~V~liE~~~~~~~~~~~~~~GG~~~ 121 (551)
.++||+|||||..|.+.|+-|.+ .|++|+++|+...+.+....-..||.|-
T Consensus 85 ~~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErddtytqssT~lSvGGi~Q 139 (509)
T KOG2853|consen 85 YHCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDDTYTQSSTMLSVGGICQ 139 (509)
T ss_pred cccCEEEECCCccchhhHHHHHHHhhcCCceEEEEeccCcccccceeeeecceee
Confidence 36899999999999999999987 5799999996655656666667888875
|
|
| >PLN02546 glutathione reductase | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.0069 Score=65.46 Aligned_cols=30 Identities=10% Similarity=0.123 Sum_probs=28.8
Q ss_pred ccEEEECCChHHHHHHHHHHhCCCcEEEEc
Q 008860 73 FDLFTIGAGSGGVRASRFAANFGASVAICE 102 (551)
Q Consensus 73 ~dVvIIGgG~aGl~aA~~l~~~G~~V~liE 102 (551)
.+|+|||||+.|+..|..|++.|.+|+|++
T Consensus 253 k~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~ 282 (558)
T PLN02546 253 EKIAIVGGGYIALEFAGIFNGLKSDVHVFI 282 (558)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCeEEEEE
Confidence 589999999999999999999999999999
|
|
| >PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.013 Score=54.11 Aligned_cols=101 Identities=23% Similarity=0.220 Sum_probs=64.5
Q ss_pred CeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCCC-------CC--------HH-----------------------
Q 008860 246 EKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRG-------FD--------ED----------------------- 287 (551)
Q Consensus 246 ~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~~-------~~--------~~----------------------- 287 (551)
-.|+|+|+|+.|+-+|..|++.|.+|.++++...+-.. |. ..
T Consensus 18 ~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~~~~GGg~~~Gg~lf~~iVVq~~a~~iL~elgi~y~~~~~g~~v~d~~~ 97 (230)
T PF01946_consen 18 YDVAIVGAGPAGLTAAYYLAKAGLKVAVIERKLSPGGGMWGGGMLFNKIVVQEEADEILDELGIPYEEYGDGYYVADSVE 97 (230)
T ss_dssp ESEEEE--SHHHHHHHHHHHHHTS-EEEEESSSS-BTTTTS-CTT---EEEETTTHHHHHHHT---EE-SSEEEES-HHH
T ss_pred CCEEEECCChhHHHHHHHHHHCCCeEEEEecCCCCCccccccccccchhhhhhhHHHHHHhCCceeEEeCCeEEEEcHHH
Confidence 46999999999999999999999999999987643211 10 11
Q ss_pred HHHHHHHHHHhcCcEEEcCcccEEEEEcC-CceEEEEEC------CC-----eEEEeeEEEEecCcCCCCC
Q 008860 288 IRDFVAEQMSLRGIEFHTEESPQAILKST-DGSLSVKTN------KG-----TVDGFSHVMFATGRRPNTK 346 (551)
Q Consensus 288 ~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~-~~~~~V~~~------~G-----~~i~~d~vi~a~G~~p~~~ 346 (551)
....+.....+.|++++..+.|+++...+ +.+..|.++ .| -.+++..||-|||.....-
T Consensus 98 ~~s~L~s~a~~aGakifn~~~vEDvi~r~~~rV~GvViNWt~V~~~glHvDPl~i~ak~ViDaTGHda~v~ 168 (230)
T PF01946_consen 98 FTSTLASKAIDAGAKIFNLTSVEDVIVREDDRVAGVVINWTPVEMAGLHVDPLTIRAKVVIDATGHDAEVV 168 (230)
T ss_dssp HHHHHHHHHHTTTEEEEETEEEEEEEEECSCEEEEEEEEEHHHHTT--T-B-EEEEESEEEE---SSSSST
T ss_pred HHHHHHHHHhcCCCEEEeeeeeeeeEEEcCCeEEEEEEEehHHhHhhcCCCcceEEEeEEEeCCCCchHHH
Confidence 11113333345899999999999987665 443344432 22 3789999999999977653
|
|
| >KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only] | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.0013 Score=65.96 Aligned_cols=32 Identities=19% Similarity=0.265 Sum_probs=30.1
Q ss_pred CccEEEECCChHHHHHHHHHHhCCCcEEEEcc
Q 008860 72 DFDLFTIGAGSGGVRASRFAANFGASVAICEL 103 (551)
Q Consensus 72 ~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~ 103 (551)
+.+|+|||||.+|+++|..|.+.|++|+|+|+
T Consensus 2 ~~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~ 33 (420)
T KOG2614|consen 2 EPKVVIVGGGIVGLATALALHRKGIDVVVLES 33 (420)
T ss_pred CCcEEEECCcHHHHHHHHHHHHcCCeEEEEee
Confidence 35899999999999999999999999999993
|
|
| >PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.0023 Score=71.71 Aligned_cols=35 Identities=11% Similarity=0.039 Sum_probs=32.5
Q ss_pred CCCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeec
Q 008860 243 SKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQ 277 (551)
Q Consensus 243 ~~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~ 277 (551)
..+++|+|||+|+.|+.+|..|.+.|.+|+++++.
T Consensus 381 ~tgKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~ 415 (1028)
T PRK06567 381 PTNYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGL 415 (1028)
T ss_pred CCCCeEEEECcCHHHHHHHHHHHhCCCeEEEEccc
Confidence 35789999999999999999999999999999975
|
|
| >KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.008 Score=60.41 Aligned_cols=103 Identities=17% Similarity=0.252 Sum_probs=74.6
Q ss_pred CCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccC--CCC---------CHHHHHHHHHHHHhc--CcEEEcCcccE
Q 008860 244 KPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVL--RGF---------DEDIRDFVAEQMSLR--GIEFHTEESPQ 310 (551)
Q Consensus 244 ~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l--~~~---------~~~~~~~l~~~l~~~--Gv~i~~~~~v~ 310 (551)
..++|+|+|.|..|+-+...|-..-.+|+++.++..++ |.+ -+.+.+-+....+.. +++++. .+-.
T Consensus 54 kKk~vVVLGsGW~a~S~lk~ldts~YdV~vVSPRnyFlFTPLLpS~~vGTve~rSIvEPIr~i~r~k~~~~~y~e-Aec~ 132 (491)
T KOG2495|consen 54 KKKRVVVLGSGWGAISLLKKLDTSLYDVTVVSPRNYFLFTPLLPSTTVGTVELRSIVEPIRAIARKKNGEVKYLE-AECT 132 (491)
T ss_pred CCceEEEEcCchHHHHHHHhccccccceEEeccccceEEeeccCCccccceeehhhhhhHHHHhhccCCCceEEe-cccE
Confidence 35799999999999999999888889999999988764 112 345556666665554 455554 4667
Q ss_pred EEEEcCCceEEEE--ECCC----eEEEeeEEEEecCcCCCCCCC
Q 008860 311 AILKSTDGSLSVK--TNKG----TVDGFSHVMFATGRRPNTKNL 348 (551)
Q Consensus 311 ~i~~~~~~~~~V~--~~~G----~~i~~d~vi~a~G~~p~~~~l 348 (551)
+|+.+.+. +.+. +.++ -.+.+|.+|+|+|..|++..+
T Consensus 133 ~iDp~~k~-V~~~s~t~~~~~~e~~i~YDyLViA~GA~~~TFgi 175 (491)
T KOG2495|consen 133 KIDPDNKK-VHCRSLTADSSDKEFVIGYDYLVIAVGAEPNTFGI 175 (491)
T ss_pred eecccccE-EEEeeeccCCCcceeeecccEEEEeccCCCCCCCC
Confidence 77776554 4333 3444 268899999999999998654
|
|
| >PLN00093 geranylgeranyl diphosphate reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.019 Score=60.54 Aligned_cols=100 Identities=17% Similarity=0.203 Sum_probs=67.4
Q ss_pred CCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCC------------C--CCHH-----------------------
Q 008860 245 PEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLR------------G--FDED----------------------- 287 (551)
Q Consensus 245 ~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~------------~--~~~~----------------------- 287 (551)
.-+|+|||+|+.|+-+|..|++.|.+|.++++...... . +.++
T Consensus 39 ~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~~~~k~cgg~i~~~~l~~lgl~~~~~~~~i~~~~~~~p~~~~v~~~~ 118 (450)
T PLN00093 39 KLRVAVIGGGPAGACAAETLAKGGIETFLIERKLDNAKPCGGAIPLCMVGEFDLPLDIIDRKVTKMKMISPSNVAVDIGK 118 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCCccccccHhHHhhhcCcHHHHHHHhhhheEecCCceEEEecc
Confidence 45899999999999999999999999999997642100 0 0101
Q ss_pred ---------------HHHHHHHHHHhcCcEEEcCcccEEEEEcC--CceEEEEECC-------C--eEEEeeEEEEecCc
Q 008860 288 ---------------IRDFVAEQMSLRGIEFHTEESPQAILKST--DGSLSVKTNK-------G--TVDGFSHVMFATGR 341 (551)
Q Consensus 288 ---------------~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~--~~~~~V~~~~-------G--~~i~~d~vi~a~G~ 341 (551)
+-+.+.+..++.|++++.+ .+.++.... ++.+.|++.+ | .++.+|.||-|.|.
T Consensus 119 ~~~~~~~~~~v~R~~~d~~L~~~A~~~Ga~~~~~-~v~~i~~~~~~~~~~~v~~~~~~~~~~~g~~~~v~a~~VIgADG~ 197 (450)
T PLN00093 119 TLKPHEYIGMVRREVLDSFLRERAQSNGATLING-LFTRIDVPKDPNGPYVIHYTSYDSGSGAGTPKTLEVDAVIGADGA 197 (450)
T ss_pred cCCCCCeEEEecHHHHHHHHHHHHHHCCCEEEec-eEEEEEeccCCCCcEEEEEEeccccccCCCccEEEeCEEEEcCCc
Confidence 1122445556779999766 577775422 2224455422 3 47999999999998
Q ss_pred CCCC
Q 008860 342 RPNT 345 (551)
Q Consensus 342 ~p~~ 345 (551)
....
T Consensus 198 ~S~v 201 (450)
T PLN00093 198 NSRV 201 (450)
T ss_pred chHH
Confidence 6643
|
|
| >COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.0076 Score=64.68 Aligned_cols=99 Identities=23% Similarity=0.277 Sum_probs=75.9
Q ss_pred CeEEEEcCcHHHHHHHHHHHhC---CCeEEEEeecCcc----------CCC--CCHHHHHHHHHHHHhcCcEEEcCcccE
Q 008860 246 EKIAIVGGGYIALEFAGIFSGL---TSEVHVFIRQKKV----------LRG--FDEDIRDFVAEQMSLRGIEFHTEESPQ 310 (551)
Q Consensus 246 ~~vvViG~G~~g~e~a~~l~~~---g~~Vtlv~~~~~~----------l~~--~~~~~~~~l~~~l~~~Gv~i~~~~~v~ 310 (551)
.+++|||.|..|.-+...+.+. -.+||++...++. ++. --+++.-.-.++.+++||+++.+.++.
T Consensus 4 ~klvvvGnGmag~r~iEell~~~~~~~~iTvfg~Ep~~nY~Ri~Ls~vl~~~~~~edi~l~~~dwy~~~~i~L~~~~~v~ 83 (793)
T COG1251 4 QKLVIIGNGMAGHRTIEELLESAPDLYDITVFGEEPRPNYNRILLSSVLAGEKTAEDISLNRNDWYEENGITLYTGEKVI 83 (793)
T ss_pred eeEEEEecccchhhHHHHHHhcCcccceEEEeccCCCccccceeeccccCCCccHHHHhccchhhHHHcCcEEEcCCeeE
Confidence 5799999999999888877774 3468887654432 111 112333334567899999999999999
Q ss_pred EEEEcCCceEEEEECCCeEEEeeEEEEecCcCCCCCC
Q 008860 311 AILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNTKN 347 (551)
Q Consensus 311 ~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~~~~ 347 (551)
.|..+. ..|.++.|.++.+|.+|+|||..|....
T Consensus 84 ~idr~~---k~V~t~~g~~~~YDkLilATGS~pfi~P 117 (793)
T COG1251 84 QIDRAN---KVVTTDAGRTVSYDKLIIATGSYPFILP 117 (793)
T ss_pred EeccCc---ceEEccCCcEeecceeEEecCccccccC
Confidence 998765 4588999999999999999999998765
|
|
| >COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.0041 Score=58.73 Aligned_cols=93 Identities=25% Similarity=0.283 Sum_probs=67.6
Q ss_pred eEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCC--------------------CCCHHHHHH---------------
Q 008860 247 KIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLR--------------------GFDEDIRDF--------------- 291 (551)
Q Consensus 247 ~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~--------------------~~~~~~~~~--------------- 291 (551)
+|+|||+|..|+-+|..|+..|.+|++++++..+.. .-++.+.+.
T Consensus 3 siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~GvGGRlAtRRl~~g~~DhGAqYfk~~~~~F~~~Ve~~~~~glV~~W~~ 82 (331)
T COG3380 3 SIAIVGAGIAGLAAAYALREAGREVTVFEKGRGVGGRLATRRLDGGRFDHGAQYFKPRDELFLRAVEALRDDGLVDVWTP 82 (331)
T ss_pred cEEEEccchHHHHHHHHHHhcCcEEEEEEcCCCcccchheeccCCccccccceeecCCchHHHHHHHHHHhCCceeeccc
Confidence 589999999999999999999999999997653310 011111111
Q ss_pred ---------------------------HHHHHHhcCcEEEcCcccEEEEEcCCceEEEEECCCe-EEEeeEEEEecCc
Q 008860 292 ---------------------------VAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTNKGT-VDGFSHVMFATGR 341 (551)
Q Consensus 292 ---------------------------l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~G~-~i~~d~vi~a~G~ 341 (551)
+.+.| ....+|+++++|+++...++. .++.+++|. ...+|.|++++..
T Consensus 83 ~~~~~~~~~~~~~~d~~pyvg~pgmsalak~L-AtdL~V~~~~rVt~v~~~~~~-W~l~~~~g~~~~~~d~vvla~PA 158 (331)
T COG3380 83 AVWTFTGDGSPPRGDEDPYVGEPGMSALAKFL-ATDLTVVLETRVTEVARTDND-WTLHTDDGTRHTQFDDVVLAIPA 158 (331)
T ss_pred cccccccCCCCCCCCCCccccCcchHHHHHHH-hccchhhhhhhhhhheecCCe-eEEEecCCCcccccceEEEecCC
Confidence 22222 234678889999999887655 889997664 5789999999865
|
|
| >KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.00047 Score=62.25 Aligned_cols=31 Identities=39% Similarity=0.508 Sum_probs=28.3
Q ss_pred CccEEEECCChHHHHHHHHHHh--CCCcEEEEc
Q 008860 72 DFDLFTIGAGSGGVRASRFAAN--FGASVAICE 102 (551)
Q Consensus 72 ~~dVvIIGgG~aGl~aA~~l~~--~G~~V~liE 102 (551)
.-||||+|+|.+||+||+.+++ +..+|.|||
T Consensus 76 esDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE 108 (328)
T KOG2960|consen 76 ESDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIE 108 (328)
T ss_pred ccceEEECCCccccceeeeeeccCCCceEEEEE
Confidence 3599999999999999999985 678999999
|
|
| >COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.0016 Score=70.30 Aligned_cols=56 Identities=18% Similarity=0.227 Sum_probs=41.6
Q ss_pred HHHHHHhcCcEEEcCcccEEEEEcCCceEEEEE--CCC---e-EEEeeEEEEecCcCCCCCC
Q 008860 292 VAEQMSLRGIEFHTEESPQAILKSTDGSLSVKT--NKG---T-VDGFSHVMFATGRRPNTKN 347 (551)
Q Consensus 292 l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~--~~G---~-~i~~d~vi~a~G~~p~~~~ 347 (551)
+...++..++++.+++.+.+|..+++..+.|++ .++ + ...++.||+|.|...+..+
T Consensus 209 l~~a~~~~nl~v~t~a~v~ri~~~~~r~~gv~~~~~~~~~~~~~~a~~~viL~AGai~Sp~L 270 (542)
T COG2303 209 LKPALKRPNLTLLTGARVRRILLEGDRAVGVEVEIGDGGTIETAVAAREVVLAAGAINSPKL 270 (542)
T ss_pred chhHhcCCceEEecCCEEEEEEEECCeeEEEEEEeCCCCceEEEecCceEEEeccccCCHHH
Confidence 344567778999999999999988876444444 333 2 2467899999999876665
|
|
| >TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.0067 Score=62.68 Aligned_cols=34 Identities=18% Similarity=0.252 Sum_probs=31.4
Q ss_pred eEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCcc
Q 008860 247 KIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKV 280 (551)
Q Consensus 247 ~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~ 280 (551)
+|+|||+|..|+|+|..|++.|.+|+++++.+..
T Consensus 2 ~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp~~ 35 (433)
T TIGR00137 2 PVHVIGGGLAGSEAAWQLAQAGVPVILYEMRPEK 35 (433)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCcEEEEeccccc
Confidence 6899999999999999999999999999977654
|
This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO. |
| >PTZ00153 lipoamide dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.012 Score=64.77 Aligned_cols=30 Identities=20% Similarity=0.210 Sum_probs=28.7
Q ss_pred ccEEEECCChHHHHHHHHHHhCCCcEEEEc
Q 008860 73 FDLFTIGAGSGGVRASRFAANFGASVAICE 102 (551)
Q Consensus 73 ~dVvIIGgG~aGl~aA~~l~~~G~~V~liE 102 (551)
.+|+|||||+.|+..|..+++.|.+|+|||
T Consensus 313 k~VvIVGgG~iGvE~A~~l~~~G~eVTLIe 342 (659)
T PTZ00153 313 NYMGIVGMGIIGLEFMDIYTALGSEVVSFE 342 (659)
T ss_pred CceEEECCCHHHHHHHHHHHhCCCeEEEEe
Confidence 479999999999999999999999999999
|
|
| >COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.0059 Score=63.35 Aligned_cols=94 Identities=15% Similarity=0.211 Sum_probs=66.3
Q ss_pred eEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCcc------------------------------------------CCC-
Q 008860 247 KIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKV------------------------------------------LRG- 283 (551)
Q Consensus 247 ~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~------------------------------------------l~~- 283 (551)
.|+|||||-.|+|.|...+++|+++.+++....- |..
T Consensus 6 DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~~dtig~msCNPaIGG~~KG~lvrEIDALGG~Mg~~~D~~~IQ~r~LN~s 85 (621)
T COG0445 6 DVIVIGGGHAGVEAALAAARMGAKTLLLTLNLDTIGEMSCNPAIGGPGKGHLVREIDALGGLMGKAADKAGIQFRMLNSS 85 (621)
T ss_pred ceEEECCCccchHHHHhhhccCCeEEEEEcCCCceeecccccccCCcccceeEEeehhccchHHHhhhhcCCchhhccCC
Confidence 6999999999999999999999998888743210 000
Q ss_pred -----------CCH-HHHHHHHHHHHh-cCcEEEcCcccEEEEEcCC-ceEEEEECCCeEEEeeEEEEecCc
Q 008860 284 -----------FDE-DIRDFVAEQMSL-RGIEFHTEESPQAILKSTD-GSLSVKTNKGTVDGFSHVMFATGR 341 (551)
Q Consensus 284 -----------~~~-~~~~~l~~~l~~-~Gv~i~~~~~v~~i~~~~~-~~~~V~~~~G~~i~~d~vi~a~G~ 341 (551)
.|. .+...+++.++. .++.++.+ .|.++..+++ .+..|.+.+|..+.|+.||++||.
T Consensus 86 KGPAVra~RaQaDk~~Y~~~mk~~le~~~NL~l~q~-~v~dli~e~~~~v~GV~t~~G~~~~a~aVVlTTGT 156 (621)
T COG0445 86 KGPAVRAPRAQADKWLYRRAMKNELENQPNLHLLQG-EVEDLIVEEGQRVVGVVTADGPEFHAKAVVLTTGT 156 (621)
T ss_pred CcchhcchhhhhhHHHHHHHHHHHHhcCCCceehHh-hhHHHhhcCCCeEEEEEeCCCCeeecCEEEEeecc
Confidence 011 122224444443 36777655 6777666444 467899999999999999999985
|
|
| >PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.005 Score=65.73 Aligned_cols=30 Identities=23% Similarity=0.449 Sum_probs=28.8
Q ss_pred ccEEEECCChHHHHHHHHHHhCCCcEEEEc
Q 008860 73 FDLFTIGAGSGGVRASRFAANFGASVAICE 102 (551)
Q Consensus 73 ~dVvIIGgG~aGl~aA~~l~~~G~~V~liE 102 (551)
.+|+|||+|.+|+++|..|++.|++|+++|
T Consensus 17 ~~v~viG~G~~G~~~A~~L~~~G~~V~~~d 46 (480)
T PRK01438 17 LRVVVAGLGVSGFAAADALLELGARVTVVD 46 (480)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEe
Confidence 479999999999999999999999999999
|
|
| >KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.0026 Score=63.83 Aligned_cols=40 Identities=25% Similarity=0.497 Sum_probs=32.9
Q ss_pred CccEEEECCChHHHHHHHHHHhCCCc--EEEEccCCCCCCCCCCCCCCCee
Q 008860 72 DFDLFTIGAGSGGVRASRFAANFGAS--VAICELPFSTISSETTGGVGGTC 120 (551)
Q Consensus 72 ~~dVvIIGgG~aGl~aA~~l~~~G~~--V~liE~~~~~~~~~~~~~~GG~~ 120 (551)
..+|+|+|||.+||++|++|++.+.+ |+|+|+ ...+||..
T Consensus 11 ~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea---------~~RvGGwi 52 (491)
T KOG1276|consen 11 GMTVAVVGGGISGLCAAYYLARLGPDVTITLFEA---------SPRVGGWI 52 (491)
T ss_pred cceEEEECCchhHHHHHHHHHhcCCCceEEEEec---------CCccccee
Confidence 46899999999999999999997765 566993 66677754
|
|
| >PRK08401 L-aspartate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.028 Score=59.72 Aligned_cols=98 Identities=21% Similarity=0.234 Sum_probs=66.5
Q ss_pred CeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCC--------------C-----------------CC---------
Q 008860 246 EKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLR--------------G-----------------FD--------- 285 (551)
Q Consensus 246 ~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~--------------~-----------------~~--------- 285 (551)
..|+|||+|..|+-.|..+++.|.+|.++++.+..-. . .+
T Consensus 2 ~DVvVVGaG~AGl~AAi~aae~G~~V~liek~~~~~~s~~a~ggi~~~~~~~ds~e~~~~d~~~~~~~~~d~~~v~~~~~ 81 (466)
T PRK08401 2 MKVGIVGGGLAGLTAAISLAKKGFDVTIIGPGIKKSNSYLAQAGIAFPILEGDSIRAHVLDTIRAGKYINDEEVVWNVIS 81 (466)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCeEEEEeCCCCCCCcHHHcCCcccccCCCCcHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 4689999999999999999999999999887431100 0 00
Q ss_pred --------------------------------------HHHHHHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEECCC
Q 008860 286 --------------------------------------EDIRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTNKG 327 (551)
Q Consensus 286 --------------------------------------~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~G 327 (551)
..+.+.+.+.+++.|++++.+ .++++..+++.++.+.. ++
T Consensus 82 ~~~~~i~~L~~~Gv~f~~~~~~~g~~~~r~~~~~~~~G~~i~~~L~~~~~~~gv~i~~~-~v~~l~~~~g~v~Gv~~-~g 159 (466)
T PRK08401 82 KSSEAYDFLTSLGLEFEGNELEGGHSFPRVFTIKNETGKHIIKILYKHARELGVNFIRG-FAEELAIKNGKAYGVFL-DG 159 (466)
T ss_pred HHHHHHHHHHHcCCCcccCCCcCCccCCeEEECCCCchHHHHHHHHHHHHhcCCEEEEe-EeEEEEeeCCEEEEEEE-CC
Confidence 112233445556678888765 67777654444344555 56
Q ss_pred eEEEeeEEEEecCcCCCC
Q 008860 328 TVDGFSHVMFATGRRPNT 345 (551)
Q Consensus 328 ~~i~~d~vi~a~G~~p~~ 345 (551)
+.+.++.||+|||..+..
T Consensus 160 ~~i~a~~VVLATGG~~~~ 177 (466)
T PRK08401 160 ELLKFDATVIATGGFSGL 177 (466)
T ss_pred EEEEeCeEEECCCcCcCC
Confidence 679999999999986643
|
|
| >COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.0079 Score=61.32 Aligned_cols=79 Identities=16% Similarity=0.195 Sum_probs=58.6
Q ss_pred CCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCC----------CCCHH---HHHHHHHHHHhcCcEEEcCcccEE
Q 008860 245 PEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLR----------GFDED---IRDFVAEQMSLRGIEFHTEESPQA 311 (551)
Q Consensus 245 ~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~----------~~~~~---~~~~l~~~l~~~Gv~i~~~~~v~~ 311 (551)
.++++|||||..|++.|..|++.|.+|+++++.+.+.. ..|.. +...+.+.-..-+|++++.++|++
T Consensus 124 ~~svLVIGGGvAGitAAl~La~~G~~v~LVEKepsiGGrmak~~k~FP~~dcs~C~LaP~m~~v~~hp~i~l~TyaeV~e 203 (622)
T COG1148 124 SKSVLVIGGGVAGITAALELADMGFKVYLVEKEPSIGGRMAKLNKTFPTNDCSICILAPKMVEVSNHPNIELITYAEVEE 203 (622)
T ss_pred ccceEEEcCcHHHHHHHHHHHHcCCeEEEEecCCcccccHHhhhccCCCcccchhhccchhhhhccCCceeeeeeeeeee
Confidence 67999999999999999999999999999999886532 11111 112233444456899999999999
Q ss_pred EEEcCCceEEEEE
Q 008860 312 ILKSTDGSLSVKT 324 (551)
Q Consensus 312 i~~~~~~~~~V~~ 324 (551)
+.+.-++ .+|+.
T Consensus 204 v~G~vGn-F~vki 215 (622)
T COG1148 204 VSGSVGN-FTVKI 215 (622)
T ss_pred ecccccc-eEEEE
Confidence 9876554 55544
|
|
| >PLN02985 squalene monooxygenase | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.027 Score=60.42 Aligned_cols=33 Identities=27% Similarity=0.283 Sum_probs=29.9
Q ss_pred CeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecC
Q 008860 246 EKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQK 278 (551)
Q Consensus 246 ~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~ 278 (551)
.+|+|||+|..|+-+|..|++.|.+|+++++.+
T Consensus 44 ~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~~ 76 (514)
T PLN02985 44 TDVIIVGAGVGGSALAYALAKDGRRVHVIERDL 76 (514)
T ss_pred ceEEEECCCHHHHHHHHHHHHcCCeEEEEECcC
Confidence 479999999999999999999999999999764
|
|
| >KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.021 Score=58.20 Aligned_cols=31 Identities=19% Similarity=0.366 Sum_probs=28.2
Q ss_pred eEEEEcCcHHHHHHHHHHHhCCCeEEEEeec
Q 008860 247 KIAIVGGGYIALEFAGIFSGLTSEVHVFIRQ 277 (551)
Q Consensus 247 ~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~ 277 (551)
.|+|||||-.|+|.|.+.++.|.+.+++...
T Consensus 30 dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~ 60 (679)
T KOG2311|consen 30 DVVVIGGGHAGCEAAAAAARLGARTLLLTHN 60 (679)
T ss_pred cEEEECCCccchHHHHHHHhcCCceEEeecc
Confidence 7999999999999999999999998888743
|
|
| >PRK08294 phenol 2-monooxygenase; Provisional | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.056 Score=59.63 Aligned_cols=100 Identities=17% Similarity=0.206 Sum_probs=70.0
Q ss_pred CeEEEEcCcHHHHHHHHHHHhC-CCeEEEEeecCccCC--------------------------------C---CC----
Q 008860 246 EKIAIVGGGYIALEFAGIFSGL-TSEVHVFIRQKKVLR--------------------------------G---FD---- 285 (551)
Q Consensus 246 ~~vvViG~G~~g~e~a~~l~~~-g~~Vtlv~~~~~~l~--------------------------------~---~~---- 285 (551)
-.|+|||+|+.|+-+|..|++. |.+|.++++.+.... . ++
T Consensus 33 ~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~~~~~~grA~gl~prtleiL~~lGl~d~l~~~g~~~~~~~~~~~~~~ 112 (634)
T PRK08294 33 VDVLIVGCGPAGLTLAAQLSAFPDITTRIVERKPGRLELGQADGIACRTMEMFQAFGFAERILKEAYWINETAFWKPDPA 112 (634)
T ss_pred CCEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCCCCCCCCeeeEEChHHHHHHHhccchHHHHhhcccccceEEEcCCCc
Confidence 4799999999999999999995 999999997653100 0 00
Q ss_pred ----------------------------HHHHHHHHHHHHhcC--cEEEcCcccEEEEEcCC--ceEEEEEC------CC
Q 008860 286 ----------------------------EDIRDFVAEQMSLRG--IEFHTEESPQAILKSTD--GSLSVKTN------KG 327 (551)
Q Consensus 286 ----------------------------~~~~~~l~~~l~~~G--v~i~~~~~v~~i~~~~~--~~~~V~~~------~G 327 (551)
..+.+.+.+.+.+.| +++..++++++++.+++ ..++|++. +|
T Consensus 113 ~~~~i~r~~~~~~~~~~~~~~~~~~l~Q~~le~~L~~~l~~~g~~v~v~~g~~v~~~~~~~~~~~~V~v~l~~~~~~~~g 192 (634)
T PRK08294 113 DPSTIVRTGRVQDTEDGLSEFPHVIVNQARVHDYFLDVMRNSPTRLEPDYGREFVDLEVDEEGEYPVTVTLRRTDGEHEG 192 (634)
T ss_pred cccceeccccccccCCCCCCCccEeeCHHHHHHHHHHHHHhcCCceEEEeCcEEEEEEECCCCCCCEEEEEEECCCCCCC
Confidence 012233445555655 57788999999986542 23566664 35
Q ss_pred --eEEEeeEEEEecCcCCCC
Q 008860 328 --TVDGFSHVMFATGRRPNT 345 (551)
Q Consensus 328 --~~i~~d~vi~a~G~~p~~ 345 (551)
+++.+|+||-|=|.+...
T Consensus 193 ~~~tv~A~~lVGaDGa~S~V 212 (634)
T PRK08294 193 EEETVRAKYVVGCDGARSRV 212 (634)
T ss_pred ceEEEEeCEEEECCCCchHH
Confidence 579999999999986543
|
|
| >TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.061 Score=58.76 Aligned_cols=51 Identities=22% Similarity=0.191 Sum_probs=36.7
Q ss_pred HHHHHhcCcEEEcCcccEEEEEcCCceEEEEE---CCCe--EEEeeEEEEecCcCC
Q 008860 293 AEQMSLRGIEFHTEESPQAILKSTDGSLSVKT---NKGT--VDGFSHVMFATGRRP 343 (551)
Q Consensus 293 ~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~---~~G~--~i~~d~vi~a~G~~p 343 (551)
.+.+++.||+++.++.++++..+++.+..|.. .+|+ .+.++.||+|+|...
T Consensus 136 ~~~~~~~gv~i~~~~~v~~L~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGG~~ 191 (566)
T TIGR01812 136 YEQCLKLGVSFFNEYFALDLIHDDGRVRGVVAYDLKTGEIVFFRAKAVVLATGGYG 191 (566)
T ss_pred HHHHHHcCCEEEeccEEEEEEEeCCEEEEEEEEECCCCcEEEEECCeEEECCCccc
Confidence 33455668999999999998876554444432 4564 578999999999754
|
This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase. |
| >TIGR01810 betA choline dehydrogenase | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.0049 Score=66.72 Aligned_cols=57 Identities=16% Similarity=0.213 Sum_probs=40.1
Q ss_pred HHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEECCC-e---EEEeeEEEEecCcCCCCCC
Q 008860 291 FVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTNKG-T---VDGFSHVMFATGRRPNTKN 347 (551)
Q Consensus 291 ~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~G-~---~i~~d~vi~a~G~~p~~~~ 347 (551)
.+...+++.|++|+.++.|.+|.-+++....|++.++ + .+.++.||+|.|..-...+
T Consensus 199 ~l~~a~~r~nl~i~~~~~V~rI~~~~~ra~GV~~~~~~~~~~~~~ak~VIlaAGai~SP~L 259 (532)
T TIGR01810 199 YLHPAMKRPNLEVQTRAFVTKINFEGNRATGVEFKKGGRKEHTEANKEVILSAGAINSPQL 259 (532)
T ss_pred HhhhhccCCCeEEEeCCEEEEEEecCCeEEEEEEEeCCcEEEEEEeeeEEEccCCCCCHHH
Confidence 3444445678999999999999877655556665432 2 3579999999997544444
|
This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified. |
| >PRK06854 adenylylsulfate reductase subunit alpha; Validated | Back alignment and domain information |
|---|
Probab=95.98 E-value=0.07 Score=58.61 Aligned_cols=52 Identities=17% Similarity=0.039 Sum_probs=35.9
Q ss_pred HHHHHHhcC-cEEEcCcccEEEEEcCCceEEEE---ECCCe--EEEeeEEEEecCcCC
Q 008860 292 VAEQMSLRG-IEFHTEESPQAILKSTDGSLSVK---TNKGT--VDGFSHVMFATGRRP 343 (551)
Q Consensus 292 l~~~l~~~G-v~i~~~~~v~~i~~~~~~~~~V~---~~~G~--~i~~d~vi~a~G~~p 343 (551)
+.+.+++.| |+++.++.+.++..+++.+..|. ..+|+ .+.++.||+|+|-..
T Consensus 138 L~~~a~~~ggV~i~~~~~v~~Li~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~ 195 (608)
T PRK06854 138 VAEAAKKALGDNVLNRVFITDLLVDDNRIAGAVGFSVRENKFYVFKAKAVIVATGGAA 195 (608)
T ss_pred HHHHHHhcCCCEEEeCCEEEEEEEeCCEEEEEEEEEccCCcEEEEECCEEEECCCchh
Confidence 334455555 99999999999876555434443 34554 588999999999643
|
|
| >PLN02785 Protein HOTHEAD | Back alignment and domain information |
|---|
Probab=95.97 E-value=0.0069 Score=65.88 Aligned_cols=31 Identities=23% Similarity=0.412 Sum_probs=29.3
Q ss_pred CCccEEEECCChHHHHHHHHHHhCCCcEEEEc
Q 008860 71 YDFDLFTIGAGSGGVRASRFAANFGASVAICE 102 (551)
Q Consensus 71 ~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE 102 (551)
..||+||||||.||+.+|.+|++ +.+|+|||
T Consensus 54 ~~yD~IIVG~G~aG~~lA~~Ls~-~~~VLllE 84 (587)
T PLN02785 54 SAYDYIVVGGGTAGCPLAATLSQ-NFSVLLLE 84 (587)
T ss_pred ccCCEEEECcCHHHHHHHHHHhc-CCcEEEEe
Confidence 46999999999999999999999 68999999
|
|
| >KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only] | Back alignment and domain information |
|---|
Probab=95.94 E-value=0.037 Score=55.73 Aligned_cols=34 Identities=29% Similarity=0.399 Sum_probs=31.3
Q ss_pred CeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCc
Q 008860 246 EKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKK 279 (551)
Q Consensus 246 ~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~ 279 (551)
.+|+|+|||..|+-.|..|++.|.+|.+++.+..
T Consensus 3 ~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e~ 36 (420)
T KOG2614|consen 3 PKVVIVGGGIVGLATALALHRKGIDVVVLESRED 36 (420)
T ss_pred CcEEEECCcHHHHHHHHHHHHcCCeEEEEeeccc
Confidence 5799999999999999999999999999997654
|
|
| >TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family | Back alignment and domain information |
|---|
Probab=95.92 E-value=0.055 Score=55.23 Aligned_cols=84 Identities=17% Similarity=0.158 Sum_probs=63.6
Q ss_pred HHHHHHHHhCCCeEEEEeecCccCCC--CCHHHHHHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEECCC-eEEEeeE
Q 008860 258 LEFAGIFSGLTSEVHVFIRQKKVLRG--FDEDIRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTNKG-TVDGFSH 334 (551)
Q Consensus 258 ~e~a~~l~~~g~~Vtlv~~~~~~l~~--~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~G-~~i~~d~ 334 (551)
-++-.+|.++|.... .++..+++|. -..++.+.+.+.+++.||+++++++|++|+ +++ ..+.+.++ ..+.+|.
T Consensus 57 ~d~~~fF~~~Gi~~~-~e~~grvfP~S~~A~sVv~~L~~~l~~~gV~i~~~~~V~~i~--~~~-~~v~~~~~~~~~~a~~ 132 (376)
T TIGR03862 57 VALQDWARGLGIETF-VGSSGRVFPVEMKAAPLLRAWLKRLAEQGVQFHTRHRWIGWQ--GGT-LRFETPDGQSTIEADA 132 (376)
T ss_pred HHHHHHHHHCCCceE-ECCCCEECCCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEe--CCc-EEEEECCCceEEecCE
Confidence 356677888887533 4455677764 456788999999999999999999999992 333 66776543 4699999
Q ss_pred EEEecCcCCCC
Q 008860 335 VMFATGRRPNT 345 (551)
Q Consensus 335 vi~a~G~~p~~ 345 (551)
||+|+|-.+..
T Consensus 133 vIlAtGG~s~p 143 (376)
T TIGR03862 133 VVLALGGASWS 143 (376)
T ss_pred EEEcCCCcccc
Confidence 99999986644
|
This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown. |
| >COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.027 Score=55.09 Aligned_cols=98 Identities=14% Similarity=0.165 Sum_probs=77.1
Q ss_pred CCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeec--C---------cc---CCCCCHHHHHHHHHHHHhcCcEEEcCcccE
Q 008860 245 PEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQ--K---------KV---LRGFDEDIRDFVAEQMSLRGIEFHTEESPQ 310 (551)
Q Consensus 245 ~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~--~---------~~---l~~~~~~~~~~l~~~l~~~Gv~i~~~~~v~ 310 (551)
+-.|+|||+|+.|...|-+.++.|.+.-++.-+ . .+ .....+++...+.+..++..|.+..-.+.+
T Consensus 211 ~yDVLvVGgGPAgaaAAiYaARKGiRTGl~aerfGGQvldT~~IENfIsv~~teGpkl~~ale~Hv~~Y~vDimn~qra~ 290 (520)
T COG3634 211 AYDVLVVGGGPAGAAAAIYAARKGIRTGLVAERFGGQVLDTMGIENFISVPETEGPKLAAALEAHVKQYDVDVMNLQRAS 290 (520)
T ss_pred CceEEEEcCCcchhHHHHHHHhhcchhhhhhhhhCCeeccccchhheeccccccchHHHHHHHHHHhhcCchhhhhhhhh
Confidence 568999999999999999988887654333210 0 11 122578899999999999999999988888
Q ss_pred EEEEcC--CceEEEEECCCeEEEeeEEEEecCcC
Q 008860 311 AILKST--DGSLSVKTNKGTVDGFSHVMFATGRR 342 (551)
Q Consensus 311 ~i~~~~--~~~~~V~~~~G~~i~~d~vi~a~G~~ 342 (551)
++++.. ++...|++.+|-.+++..+|++||.+
T Consensus 291 ~l~~a~~~~~l~ev~l~nGavLkaktvIlstGAr 324 (520)
T COG3634 291 KLEPAAVEGGLIEVELANGAVLKARTVILATGAR 324 (520)
T ss_pred cceecCCCCccEEEEecCCceeccceEEEecCcc
Confidence 888742 33588999999999999999999975
|
|
| >KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.0039 Score=64.23 Aligned_cols=34 Identities=32% Similarity=0.477 Sum_probs=31.5
Q ss_pred CCCccEEEECCChHHHHHHHHHHhCCCcEEEEcc
Q 008860 70 HYDFDLFTIGAGSGGVRASRFAANFGASVAICEL 103 (551)
Q Consensus 70 ~~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~ 103 (551)
..+|||+|||||..|..+|.-++-+|++|.|+|+
T Consensus 65 ~~~fDVLIIGGGAtGaGcALDA~TRGLktaLVE~ 98 (680)
T KOG0042|consen 65 THEFDVLIIGGGATGAGCALDAATRGLKTALVEA 98 (680)
T ss_pred CCcccEEEECCCccCcceeehhhcccceeEEEec
Confidence 3469999999999999999999999999999993
|
|
| >TIGR00551 nadB L-aspartate oxidase | Back alignment and domain information |
|---|
Probab=95.84 E-value=0.086 Score=56.42 Aligned_cols=56 Identities=16% Similarity=0.072 Sum_probs=39.4
Q ss_pred HHHHHHHHHh-cCcEEEcCcccEEEEEcCCceEEEEECC-C--eEEEeeEEEEecCcCCC
Q 008860 289 RDFVAEQMSL-RGIEFHTEESPQAILKSTDGSLSVKTNK-G--TVDGFSHVMFATGRRPN 344 (551)
Q Consensus 289 ~~~l~~~l~~-~Gv~i~~~~~v~~i~~~~~~~~~V~~~~-G--~~i~~d~vi~a~G~~p~ 344 (551)
.+.+.+.+++ .||+++.++.++++..+++.+..+...+ + ..+.++.||+|+|....
T Consensus 131 ~~~L~~~~~~~~gi~i~~~~~v~~l~~~~g~v~Gv~~~~~~~~~~i~A~~VVlAtGG~~~ 190 (488)
T TIGR00551 131 ITTLVKKALNHPNIRIIEGENALDLLIETGRVVGVWVWNRETVETCHADAVVLATGGAGK 190 (488)
T ss_pred HHHHHHHHHhcCCcEEEECeEeeeeeccCCEEEEEEEEECCcEEEEEcCEEEECCCcccC
Confidence 3345555565 5899999999999987655444454432 3 36889999999998664
|
L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA. |
| >KOG3855 consensus Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis [Coenzyme transport and metabolism; Energy production and conversion] | Back alignment and domain information |
|---|
Probab=95.81 E-value=0.012 Score=58.99 Aligned_cols=32 Identities=16% Similarity=0.332 Sum_probs=28.8
Q ss_pred CCccEEEECCChHHHHHHHHHHh----CCCcEEEEc
Q 008860 71 YDFDLFTIGAGSGGVRASRFAAN----FGASVAICE 102 (551)
Q Consensus 71 ~~~dVvIIGgG~aGl~aA~~l~~----~G~~V~liE 102 (551)
..|||||+||||.|++.|..|.. +.+||.|+|
T Consensus 35 ~~~dVvIvGgGpvg~aLAa~l~snp~~~~~kv~Lld 70 (481)
T KOG3855|consen 35 AKYDVVIVGGGPVGLALAAALGSNPPFQDKKVLLLD 70 (481)
T ss_pred ccCCEEEECCchHHHHHHHHhccCCccchheeeEEe
Confidence 36999999999999999999987 457999999
|
|
| >PRK08275 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=95.78 E-value=0.1 Score=56.79 Aligned_cols=58 Identities=14% Similarity=0.163 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHhcCcEEEcCcccEEEEEc-CCceEEEE---ECCCe--EEEeeEEEEecCcCCC
Q 008860 287 DIRDFVAEQMSLRGIEFHTEESPQAILKS-TDGSLSVK---TNKGT--VDGFSHVMFATGRRPN 344 (551)
Q Consensus 287 ~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~-~~~~~~V~---~~~G~--~i~~d~vi~a~G~~p~ 344 (551)
.+.+.+.+.+++.||+++.++.++++..+ ++.+..+. ..+|+ .+.++.||+|||....
T Consensus 138 ~i~~~L~~~~~~~gv~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~~~ 201 (554)
T PRK08275 138 DIKKVLYRQLKRARVLITNRIMATRLLTDADGRVAGALGFDCRTGEFLVIRAKAVILCCGAAGR 201 (554)
T ss_pred HHHHHHHHHHHHCCCEEEcceEEEEEEEcCCCeEEEEEEEecCCCcEEEEECCEEEECCCCccc
Confidence 45566777778889999999999999876 33334443 34564 4789999999998653
|
|
| >PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G | Back alignment and domain information |
|---|
Probab=95.72 E-value=0.018 Score=43.13 Aligned_cols=31 Identities=26% Similarity=0.384 Sum_probs=28.4
Q ss_pred EEcCcHHHHHHHHHHHhCCCeEEEEeecCcc
Q 008860 250 IVGGGYIALEFAGIFSGLTSEVHVFIRQKKV 280 (551)
Q Consensus 250 ViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~ 280 (551)
|||+|..|+.+|..|++.|.+|+++++.+.+
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~~ 31 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDRL 31 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSSSS
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCccc
Confidence 7999999999999999999999999998865
|
... |
| >PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=95.61 E-value=0.11 Score=56.43 Aligned_cols=59 Identities=12% Similarity=0.067 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHhcCcEEEcCcccEEEEEcCCc-eEEEEE---CCCe--EEEeeEEEEecCcCCC
Q 008860 286 EDIRDFVAEQMSLRGIEFHTEESPQAILKSTDG-SLSVKT---NKGT--VDGFSHVMFATGRRPN 344 (551)
Q Consensus 286 ~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~-~~~V~~---~~G~--~i~~d~vi~a~G~~p~ 344 (551)
..+...+.+.+++.||++++++.++++..++++ ++.+.. .+|+ .+.++.||+|||-..+
T Consensus 134 ~~i~~~L~~~~~~~gv~i~~~t~v~~Li~~~~~~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~~~ 198 (543)
T PRK06263 134 HEMMMGLMEYLIKERIKILEEVMAIKLIVDENREVIGAIFLDLRNGEIFPIYAKATILATGGAGQ 198 (543)
T ss_pred HHHHHHHHHHHhcCCCEEEeCeEeeeeEEeCCcEEEEEEEEECCCCcEEEEEcCcEEECCCCCCC
Confidence 345555666677789999999999998876554 454442 4564 5789999999997543
|
|
| >PRK07804 L-aspartate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=95.58 E-value=0.13 Score=55.63 Aligned_cols=53 Identities=13% Similarity=0.160 Sum_probs=36.4
Q ss_pred HHHHHHHHHhcCcEEEcCcccEEEEEcCC-ceEEEEE-------CCC-eEEEeeEEEEecCc
Q 008860 289 RDFVAEQMSLRGIEFHTEESPQAILKSTD-GSLSVKT-------NKG-TVDGFSHVMFATGR 341 (551)
Q Consensus 289 ~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~-~~~~V~~-------~~G-~~i~~d~vi~a~G~ 341 (551)
.+.+.+.+++.||+++.++.+.++..+++ .+..+.. .++ ..+.++.||+|+|.
T Consensus 147 ~~~L~~~~~~~gV~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~~~~~g~~~i~Ak~VIlATGG 208 (541)
T PRK07804 147 QRALDAAVRADPLDIREHALALDLLTDGTGAVAGVTLHVLGEGSPDGVGAVHAPAVVLATGG 208 (541)
T ss_pred HHHHHHHHHhCCCEEEECeEeeeeEEcCCCeEEEEEEEeccCCCCCcEEEEEcCeEEECCCC
Confidence 34455556677889999999999877654 3344443 233 35889999999986
|
|
| >PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=95.55 E-value=0.1 Score=55.31 Aligned_cols=31 Identities=26% Similarity=0.587 Sum_probs=29.4
Q ss_pred CccEEEECCChHHHHHHHHHHhCCCcEEEEc
Q 008860 72 DFDLFTIGAGSGGVRASRFAANFGASVAICE 102 (551)
Q Consensus 72 ~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE 102 (551)
..+|+|||+|..|+.+|..|++.|++|+++|
T Consensus 5 ~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d 35 (450)
T PRK14106 5 GKKVLVVGAGVSGLALAKFLKKLGAKVILTD 35 (450)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEe
Confidence 3679999999999999999999999999999
|
|
| >PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=95.53 E-value=0.12 Score=56.44 Aligned_cols=53 Identities=17% Similarity=0.090 Sum_probs=37.6
Q ss_pred HHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEEC---CCe--EEEeeEEEEecCcCC
Q 008860 291 FVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTN---KGT--VDGFSHVMFATGRRP 343 (551)
Q Consensus 291 ~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~---~G~--~i~~d~vi~a~G~~p 343 (551)
.+.+.+++.||+++.++.++++..+++.++.|... +|+ .+.++.||+|||-..
T Consensus 141 ~L~~~~~~~gv~i~~~~~~~~Li~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~ 198 (566)
T PRK06452 141 TLFERTSGLNVDFYNEWFSLDLVTDNKKVVGIVAMQMKTLTPFFFKTKAVVLATGGMG 198 (566)
T ss_pred HHHHHHHhCCCEEEeCcEEEEEEEECCEEEEEEEEECCCCeEEEEEeCeEEECCCccc
Confidence 34445556789999999999988765555555542 343 578999999999543
|
|
| >COG4529 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.44 E-value=0.18 Score=52.09 Aligned_cols=100 Identities=19% Similarity=0.313 Sum_probs=62.9
Q ss_pred CeEEEEcCcHHHHHHHHHHHhCC---CeEEEEeecCccC-------------------------CCCCHHHHHHHHHH--
Q 008860 246 EKIAIVGGGYIALEFAGIFSGLT---SEVHVFIRQKKVL-------------------------RGFDEDIRDFVAEQ-- 295 (551)
Q Consensus 246 ~~vvViG~G~~g~e~a~~l~~~g---~~Vtlv~~~~~~l-------------------------~~~~~~~~~~l~~~-- 295 (551)
.+|+|||+|++|+.+|..|.+.- ..|++++..+.+. +..+.++.++|++.
T Consensus 2 ~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~G~GiaYs~~~p~~~lNv~a~~mS~~~pD~p~~F~~WL~~~~~ 81 (474)
T COG4529 2 FKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNFGQGIAYSTEEPEHLLNVPAARMSAFAPDIPQDFVRWLQKQLQ 81 (474)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccccCCCccCCCCCchhhhccccccccccCCCCchHHHHHHHhccc
Confidence 47999999999999999987652 2388888766531 11122344443332
Q ss_pred --------------------------------HHhcC---cEEEcCcccEEEEEcCC-ceEEEEECCCeEEEeeEEEEec
Q 008860 296 --------------------------------MSLRG---IEFHTEESPQAILKSTD-GSLSVKTNKGTVDGFSHVMFAT 339 (551)
Q Consensus 296 --------------------------------l~~~G---v~i~~~~~v~~i~~~~~-~~~~V~~~~G~~i~~d~vi~a~ 339 (551)
+++.- +.++ .++.+.+..+++ +...+...+|....||.+|+||
T Consensus 82 ~~~d~~~~~~d~~~y~pR~lfG~Yl~e~l~~l~~~~~~~~v~~~-~~~a~~~~~~~n~~~~~~~~~~g~~~~ad~~Vlat 160 (474)
T COG4529 82 RYRDPEDINHDGQAYPPRRLFGEYLREQLAALLARGRQTRVRTI-REEATSVRQDTNAGGYLVTTADGPSEIADIIVLAT 160 (474)
T ss_pred ccCChhhcCCccccccchhHHHHHHHHHHHHHHHhcCccceeEE-eeeeecceeccCCceEEEecCCCCeeeeeEEEEec
Confidence 11111 3333 334455555433 2356777899989999999999
Q ss_pred CcCCCCC
Q 008860 340 GRRPNTK 346 (551)
Q Consensus 340 G~~p~~~ 346 (551)
|..+...
T Consensus 161 gh~~~~~ 167 (474)
T COG4529 161 GHSAPPA 167 (474)
T ss_pred cCCCCCc
Confidence 9876654
|
|
| >KOG1238 consensus Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family) [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.36 E-value=0.016 Score=61.55 Aligned_cols=34 Identities=21% Similarity=0.299 Sum_probs=31.0
Q ss_pred CCCCccEEEECCChHHHHHHHHHHh-CCCcEEEEc
Q 008860 69 SHYDFDLFTIGAGSGGVRASRFAAN-FGASVAICE 102 (551)
Q Consensus 69 ~~~~~dVvIIGgG~aGl~aA~~l~~-~G~~V~liE 102 (551)
....||.+|||||.||...|.+|++ ..++|+|+|
T Consensus 54 ~~~~yDyIVVGgGtAGcvlAarLSEn~~~~VLLLE 88 (623)
T KOG1238|consen 54 LDSSYDYIVVGGGTAGCVLAARLSENPNWSVLLLE 88 (623)
T ss_pred cccCCCEEEECCCchhHHHHHhhccCCCceEEEEe
Confidence 4457999999999999999999999 568999999
|
|
| >PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed | Back alignment and domain information |
|---|
Probab=95.34 E-value=0.046 Score=61.79 Aligned_cols=33 Identities=36% Similarity=0.516 Sum_probs=30.4
Q ss_pred eEEEEcCcHHHHHHHHHHHhC--CCeEEEEeecCc
Q 008860 247 KIAIVGGGYIALEFAGIFSGL--TSEVHVFIRQKK 279 (551)
Q Consensus 247 ~vvViG~G~~g~e~a~~l~~~--g~~Vtlv~~~~~ 279 (551)
+|+|||+|+.|+-+|..|++. |.+|+++++.+.
T Consensus 2 ~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~ 36 (765)
T PRK08255 2 RIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRP 36 (765)
T ss_pred eEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCC
Confidence 689999999999999999998 899999998765
|
|
| >PTZ00367 squalene epoxidase; Provisional | Back alignment and domain information |
|---|
Probab=95.22 E-value=0.1 Score=56.64 Aligned_cols=33 Identities=24% Similarity=0.261 Sum_probs=30.7
Q ss_pred CeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecC
Q 008860 246 EKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQK 278 (551)
Q Consensus 246 ~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~ 278 (551)
-+|+|||+|..|+-+|..|++.|.+|+++++.+
T Consensus 34 ~dViIVGaGiaGlalA~aLar~G~~V~VlEr~~ 66 (567)
T PTZ00367 34 YDVIIVGGSIAGPVLAKALSKQGRKVLMLERDL 66 (567)
T ss_pred ccEEEECCCHHHHHHHHHHHhcCCEEEEEcccc
Confidence 479999999999999999999999999999865
|
|
| >TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup | Back alignment and domain information |
|---|
Probab=95.18 E-value=0.16 Score=55.80 Aligned_cols=44 Identities=16% Similarity=0.091 Sum_probs=32.0
Q ss_pred CcEEEcCcccEEEEEcCC-ceEEEEEC---CCe--EEEeeEEEEecCcCC
Q 008860 300 GIEFHTEESPQAILKSTD-GSLSVKTN---KGT--VDGFSHVMFATGRRP 343 (551)
Q Consensus 300 Gv~i~~~~~v~~i~~~~~-~~~~V~~~---~G~--~i~~d~vi~a~G~~p 343 (551)
||+++.++.++++..+++ .++.|... +|+ .+.++.||+|||-..
T Consensus 147 gV~i~~~t~v~~Li~dd~grV~GV~~~~~~~g~~~~i~AkaVVLATGG~g 196 (603)
T TIGR01811 147 LVEKYEGWEMLDIIVVDGNRARGIIARNLVTGEIETHSADAVILATGGYG 196 (603)
T ss_pred CcEEEeCcEEEEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEECCCCCc
Confidence 788999999999876544 44555542 453 578999999998743
|
This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes. |
| >PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function | Back alignment and domain information |
|---|
Probab=95.02 E-value=0.031 Score=57.99 Aligned_cols=57 Identities=18% Similarity=0.244 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHhcCcEEEcCcccEEEEEcCCc-eEEEEECCCeEEEeeEEEEecCcCC
Q 008860 286 EDIRDFVAEQMSLRGIEFHTEESPQAILKSTDG-SLSVKTNKGTVDGFSHVMFATGRRP 343 (551)
Q Consensus 286 ~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~-~~~V~~~~G~~i~~d~vi~a~G~~p 343 (551)
.++.+.+-+...=.|..++++..|.+|..++++ ...|. .+|+++.|+.||....+-|
T Consensus 232 GELpQ~FcRl~AV~GG~Y~L~~~i~~i~~~~~g~~~gV~-s~ge~v~~k~vI~dpsy~p 289 (438)
T PF00996_consen 232 GELPQAFCRLSAVYGGTYMLNRPIDEIVVDEDGKVIGVK-SEGEVVKAKKVIGDPSYLP 289 (438)
T ss_dssp THHHHHHHHHHHHTT-EEESS--EEEEEEETTTEEEEEE-ETTEEEEESEEEEEGGGBG
T ss_pred ccHHHHHHHHhhhcCcEEEeCCccceeeeecCCeEEEEe-cCCEEEEcCEEEECCccCc
Confidence 378888888888899999999999999886555 34455 4888999999998777666
|
This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A .... |
| >PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B | Back alignment and domain information |
|---|
Probab=95.01 E-value=0.067 Score=54.18 Aligned_cols=100 Identities=19% Similarity=0.242 Sum_probs=58.5
Q ss_pred eEEEEcCcHHHHHHHHHHHhCC-CeEEEEeecCcc-------CC----------C----CC-------------------
Q 008860 247 KIAIVGGGYIALEFAGIFSGLT-SEVHVFIRQKKV-------LR----------G----FD------------------- 285 (551)
Q Consensus 247 ~vvViG~G~~g~e~a~~l~~~g-~~Vtlv~~~~~~-------l~----------~----~~------------------- 285 (551)
.++.||.|+.++-+|..+.+.+ .++.++++.+.+ ++ . -+
T Consensus 4 D~igIG~GP~nLslA~~l~~~~~~~~~f~e~~~~f~Wh~gmll~~~~~q~~fl~Dlvt~~~P~s~~sflnYL~~~~rl~~ 83 (341)
T PF13434_consen 4 DLIGIGFGPFNLSLAALLEEHGDLKALFLERRPSFSWHPGMLLPGARMQVSFLKDLVTLRDPTSPFSFLNYLHEHGRLYE 83 (341)
T ss_dssp SEEEE--SHHHHHHHHHHHHHH---EEEEES-SS--TTGGG--SS-B-SS-TTSSSSTTT-TTSTTSHHHHHHHTT-HHH
T ss_pred eEEEEeeCHHHHHHHHHhhhcCCCCEEEEecCCCCCcCCccCCCCCccccccccccCcCcCCCCcccHHHHHHHcCChhh
Confidence 4789999999999999998886 788899977643 00 0 00
Q ss_pred -----------HHHHHHHHHHHHhcCcEEEcCcccEEEEEcCCc---eEEEEEC----CCeEEEeeEEEEecCcCCCCC
Q 008860 286 -----------EDIRDFVAEQMSLRGIEFHTEESPQAILKSTDG---SLSVKTN----KGTVDGFSHVMFATGRRPNTK 346 (551)
Q Consensus 286 -----------~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~---~~~V~~~----~G~~i~~d~vi~a~G~~p~~~ 346 (551)
.++.+.++...++.+-.+.++++|++|+...+. ...|.+. +++++.|+.||+++|..|...
T Consensus 84 f~~~~~~~p~R~ef~dYl~Wva~~~~~~v~~~~~V~~I~~~~~~~~~~~~V~~~~~~g~~~~~~ar~vVla~G~~P~iP 162 (341)
T PF13434_consen 84 FYNRGYFFPSRREFNDYLRWVAEQLDNQVRYGSEVTSIEPDDDGDEDLFRVTTRDSDGDGETYRARNVVLATGGQPRIP 162 (341)
T ss_dssp HHHH--SS-BHHHHHHHHHHHHCCGTTTEEESEEEEEEEEEEETTEEEEEEEEEETTS-EEEEEESEEEE----EE---
T ss_pred hhhcCCCCCCHHHHHHHHHHHHHhCCCceEECCEEEEEEEecCCCccEEEEEEeecCCCeeEEEeCeEEECcCCCCCCC
Confidence 011222333334445448889999999876543 3667762 346899999999999988764
|
|
| >PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1 | Back alignment and domain information |
|---|
Probab=95.01 E-value=0.11 Score=45.71 Aligned_cols=77 Identities=16% Similarity=0.205 Sum_probs=51.9
Q ss_pred EEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCCCCCHHHHHHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEECCC
Q 008860 248 IAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTNKG 327 (551)
Q Consensus 248 vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~G 327 (551)
|+|+|+|.+|.-+|..|++.|.+|+++.|.. ..+.+++.|+.+.... .+.... ......+-
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~-------------~~~~~~~~g~~~~~~~--~~~~~~----~~~~~~~~ 61 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP-------------RLEAIKEQGLTITGPD--GDETVQ----PPIVISAP 61 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESHH-------------HHHHHHHHCEEEEETT--EEEEEE----EEEEESSH
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEccc-------------cHHhhhheeEEEEecc--cceecc----cccccCcc
Confidence 6899999999999999999999999999843 2344788899988774 111100 11222221
Q ss_pred --eEEEeeEEEEecCcCC
Q 008860 328 --TVDGFSHVMFATGRRP 343 (551)
Q Consensus 328 --~~i~~d~vi~a~G~~p 343 (551)
..-.+|.||+|+-...
T Consensus 62 ~~~~~~~D~viv~vKa~~ 79 (151)
T PF02558_consen 62 SADAGPYDLVIVAVKAYQ 79 (151)
T ss_dssp GHHHSTESEEEE-SSGGG
T ss_pred hhccCCCcEEEEEecccc
Confidence 2346899999875544
|
1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B .... |
| >PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways | Back alignment and domain information |
|---|
Probab=94.91 E-value=0.037 Score=56.13 Aligned_cols=35 Identities=26% Similarity=0.286 Sum_probs=30.5
Q ss_pred eEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccC
Q 008860 247 KIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVL 281 (551)
Q Consensus 247 ~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l 281 (551)
+|+|||+|+.|+-+|..|++.|.+|+++++.+.+.
T Consensus 3 dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~~~ 37 (356)
T PF01494_consen 3 DVAIVGAGPAGLAAALALARAGIDVTIIERRPDPR 37 (356)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTCEEEEEESSSSCC
T ss_pred eEEEECCCHHHHHHHHHHHhcccccccchhccccc
Confidence 58999999999999999999999999999987654
|
In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C .... |
| >KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=94.87 E-value=0.18 Score=49.63 Aligned_cols=70 Identities=20% Similarity=0.409 Sum_probs=44.8
Q ss_pred HHHHHHhcCcEEEcCcccEEEEEcCCceEEEEECCCeE--EEeeEEEEecCcCCCCCCCCccccCeeecCCCCeEeCC
Q 008860 292 VAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTNKGTV--DGFSHVMFATGRRPNTKNLGLEKVGVKMTKNGAIEVDE 367 (551)
Q Consensus 292 l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~G~~--i~~d~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~ 367 (551)
+++.|.+.+|+++.+.. ++. +++.+.|+..||++ +.+..+++|+|.+|.... +....+.+|.+|+....+
T Consensus 116 Y~~~L~k~~V~~i~G~a--~f~--~~~~v~V~~~d~~~~~Ytak~iLIAtGg~p~~Pn--IpG~E~gidSDgff~Lee 187 (478)
T KOG0405|consen 116 YKRNLAKAAVKLIEGRA--RFV--SPGEVEVEVNDGTKIVYTAKHILIATGGRPIIPN--IPGAELGIDSDGFFDLEE 187 (478)
T ss_pred HHhhccccceeEEeeeE--EEc--CCCceEEEecCCeeEEEecceEEEEeCCccCCCC--CCchhhccccccccchhh
Confidence 45566677788777621 222 22237788888863 578999999999998775 334444455666554443
|
|
| >COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=94.80 E-value=0.029 Score=54.54 Aligned_cols=30 Identities=33% Similarity=0.385 Sum_probs=28.7
Q ss_pred ccEEEECCChHHHHHHHHHHhCCCcEEEEc
Q 008860 73 FDLFTIGAGSGGVRASRFAANFGASVAICE 102 (551)
Q Consensus 73 ~dVvIIGgG~aGl~aA~~l~~~G~~V~liE 102 (551)
..|-|||||.||..||++++++|.+|.|+|
T Consensus 4 ~~i~VIGaGLAGSEAAwqiA~~Gv~V~L~E 33 (439)
T COG1206 4 QPINVIGAGLAGSEAAWQIAKRGVPVILYE 33 (439)
T ss_pred CceEEEcccccccHHHHHHHHcCCcEEEEE
Confidence 458999999999999999999999999999
|
|
| >TIGR02352 thiamin_ThiO glycine oxidase ThiO | Back alignment and domain information |
|---|
Probab=94.66 E-value=0.089 Score=53.10 Aligned_cols=59 Identities=15% Similarity=0.160 Sum_probs=49.6
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCcCCC
Q 008860 285 DEDIRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPN 344 (551)
Q Consensus 285 ~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~ 344 (551)
+..+...+.+.++++|++++.+++|+++..+++....|.+.+| ++.+|.||+|+|....
T Consensus 136 p~~l~~~l~~~~~~~g~~~~~~~~v~~i~~~~~~~~~v~~~~g-~~~a~~vV~a~G~~~~ 194 (337)
T TIGR02352 136 PRALLKALEKALEKLGVEIIEHTEVQHIEIRGEKVTAIVTPSG-DVQADQVVLAAGAWAG 194 (337)
T ss_pred hHHHHHHHHHHHHHcCCEEEccceEEEEEeeCCEEEEEEcCCC-EEECCEEEEcCChhhh
Confidence 5677888889999999999999999999886665455777777 6999999999997654
|
This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein. |
| >KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.65 E-value=0.034 Score=55.67 Aligned_cols=56 Identities=23% Similarity=0.331 Sum_probs=45.1
Q ss_pred HhcCcEEEcCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCcCCCCCCCCccccCee
Q 008860 297 SLRGIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNTKNLGLEKVGVK 356 (551)
Q Consensus 297 ~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~~~~l~l~~~gl~ 356 (551)
...||-+..+-.|.+|...++. |.++||.+|.+|..++|||.+|..... ++.++-+
T Consensus 268 ~nGGvAvl~G~kvvkid~~d~~---V~LnDG~~I~YdkcLIATG~~Pk~l~~-~~~A~~e 323 (659)
T KOG1346|consen 268 VNGGVAVLRGRKVVKIDEEDKK---VILNDGTTIGYDKCLIATGVRPKKLQV-FEEASEE 323 (659)
T ss_pred ccCceEEEeccceEEeecccCe---EEecCCcEeehhheeeecCcCcccchh-hhhcCHH
Confidence 4568999999999999887754 899999999999999999999976533 4444433
|
|
| >PRK08626 fumarate reductase flavoprotein subunit; Provisional | Back alignment and domain information |
|---|
Probab=94.61 E-value=0.33 Score=53.86 Aligned_cols=50 Identities=14% Similarity=0.158 Sum_probs=36.2
Q ss_pred HHHHhcCcEEEcCcccEEEEEcCCceEEEEE---CCCe--EEEeeEEEEecCcCC
Q 008860 294 EQMSLRGIEFHTEESPQAILKSTDGSLSVKT---NKGT--VDGFSHVMFATGRRP 343 (551)
Q Consensus 294 ~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~---~~G~--~i~~d~vi~a~G~~p 343 (551)
+.+++.||+++.++.+.++..+++.+..+.. .+|+ .+.++.||+|||-..
T Consensus 166 ~~~~~~gv~i~~~~~~~~Li~~~g~v~Gv~~~~~~~G~~~~i~AkaVVLATGG~g 220 (657)
T PRK08626 166 NEAIKLGVPVHDRKEAIALIHDGKRCYGAVVRCLITGELRAYVAKATLIATGGYG 220 (657)
T ss_pred HHHHhCCCEEEeeEEEEEEEEECCEEEEEEEEEcCCCcEEEEEcCeEEECCCccc
Confidence 4456678999999999999876554444443 4565 467999999999543
|
|
| >PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=94.58 E-value=0.38 Score=52.60 Aligned_cols=52 Identities=17% Similarity=0.121 Sum_probs=35.3
Q ss_pred HHHHHHh-cCcEEEcCcccEEEEEcCCceEEEE---ECCCe--EEEeeEEEEecCcCC
Q 008860 292 VAEQMSL-RGIEFHTEESPQAILKSTDGSLSVK---TNKGT--VDGFSHVMFATGRRP 343 (551)
Q Consensus 292 l~~~l~~-~Gv~i~~~~~v~~i~~~~~~~~~V~---~~~G~--~i~~d~vi~a~G~~p 343 (551)
+.+.+++ .||+++.++.+.++..+++.++.+. ..+|+ .+.++.||+|||-..
T Consensus 143 L~~~~~~~~gv~i~~~~~v~~Li~~~g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~~ 200 (577)
T PRK06069 143 LYSRALRFDNIHFYDEHFVTSLIVENGVFKGVTAIDLKRGEFKVFQAKAGIIATGGAG 200 (577)
T ss_pred HHHHHHhcCCCEEEECCEEEEEEEECCEEEEEEEEEcCCCeEEEEECCcEEEcCchhc
Confidence 3444444 5888888888888876554433433 34664 578999999999864
|
|
| >KOG2852 consensus Possible oxidoreductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.56 E-value=0.36 Score=46.41 Aligned_cols=34 Identities=29% Similarity=0.475 Sum_probs=29.0
Q ss_pred CCeEEEEcCcHHHHHHHHHHHhCC------CeEEEEeecC
Q 008860 245 PEKIAIVGGGYIALEFAGIFSGLT------SEVHVFIRQK 278 (551)
Q Consensus 245 ~~~vvViG~G~~g~e~a~~l~~~g------~~Vtlv~~~~ 278 (551)
.++++|+|||.+|+-.|++|.+.+ ..||+++.+.
T Consensus 10 sk~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifEs~~ 49 (380)
T KOG2852|consen 10 SKKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFESKE 49 (380)
T ss_pred ceEEEEECCCceeeeeehhhhcCCccCCCceeEEEEeecc
Confidence 479999999999999999999886 6788888543
|
|
| >PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=94.49 E-value=0.13 Score=54.33 Aligned_cols=80 Identities=21% Similarity=0.353 Sum_probs=57.4
Q ss_pred CCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCCCCCHHHHHHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEE
Q 008860 245 PEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKT 324 (551)
Q Consensus 245 ~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~ 324 (551)
.++++|+|+|.+|+.+|..|.+.|++|+++++... +.+ +...+.+.+.|++++.+....+
T Consensus 5 ~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~~------~~~-~~~~~~l~~~~~~~~~~~~~~~------------- 64 (450)
T PRK14106 5 GKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKEE------DQL-KEALEELGELGIELVLGEYPEE------------- 64 (450)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCch------HHH-HHHHHHHHhcCCEEEeCCcchh-------------
Confidence 58999999999999999999999999999987541 122 2233446677888765533220
Q ss_pred CCCeEEEeeEEEEecCcCCCCCC
Q 008860 325 NKGTVDGFSHVMFATGRRPNTKN 347 (551)
Q Consensus 325 ~~G~~i~~d~vi~a~G~~p~~~~ 347 (551)
..-.+|.||.++|..++...
T Consensus 65 ---~~~~~d~vv~~~g~~~~~~~ 84 (450)
T PRK14106 65 ---FLEGVDLVVVSPGVPLDSPP 84 (450)
T ss_pred ---HhhcCCEEEECCCCCCCCHH
Confidence 01247999999998877653
|
|
| >PLN02815 L-aspartate oxidase | Back alignment and domain information |
|---|
Probab=94.43 E-value=0.44 Score=52.10 Aligned_cols=55 Identities=18% Similarity=0.192 Sum_probs=36.3
Q ss_pred HHHHHHHHHHhc-CcEEEcCcccEEEEEcC-Cc---eEEEEE---CCCe--EEEeeEEEEecCcC
Q 008860 288 IRDFVAEQMSLR-GIEFHTEESPQAILKST-DG---SLSVKT---NKGT--VDGFSHVMFATGRR 342 (551)
Q Consensus 288 ~~~~l~~~l~~~-Gv~i~~~~~v~~i~~~~-~~---~~~V~~---~~G~--~i~~d~vi~a~G~~ 342 (551)
+...+.+.+++. ||+++.++.+.++..++ ++ ++.+.. .+|+ .+.++.||+|||-.
T Consensus 157 i~~~L~~~~~~~~~i~i~~~~~~~~Li~~~~g~~~~v~Gv~~~~~~~g~~~~i~AkaVILATGG~ 221 (594)
T PLN02815 157 IERALLEAVKNDPNITFFEHHFAIDLLTSQDGGSIVCHGADVLDTRTGEVVRFISKVTLLASGGA 221 (594)
T ss_pred HHHHHHHHHHhcCCCEEEeceEhheeeeecCCCccEEEEEEEEEcCCCeEEEEEeceEEEcCCcc
Confidence 333444445444 89999999999987643 22 345543 3564 46899999999943
|
|
| >PRK06475 salicylate hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=94.34 E-value=0.072 Score=55.41 Aligned_cols=56 Identities=13% Similarity=0.099 Sum_probs=40.6
Q ss_pred CeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCCC-CCHHHHHHHHHHHHhcCc
Q 008860 246 EKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRG-FDEDIRDFVAEQMSLRGI 301 (551)
Q Consensus 246 ~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~~-~~~~~~~~l~~~l~~~Gv 301 (551)
++|+|||+|..|+-+|..|++.|.+|+++++.+.+... ..-.+.....+.|++.|+
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~~~~~~g~gi~l~~~~~~~L~~~Gl 59 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAARGWAVTIIEKAQELSEVGAGLQLAPNAMRHLERLGV 59 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccCcCCccceeChhHHHHHHHCCC
Confidence 68999999999999999999999999999998754321 111222334455555554
|
|
| >PRK05868 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=94.33 E-value=0.061 Score=55.34 Aligned_cols=36 Identities=11% Similarity=0.079 Sum_probs=32.9
Q ss_pred CeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccC
Q 008860 246 EKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVL 281 (551)
Q Consensus 246 ~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l 281 (551)
++|+|||+|..|+.+|..|++.|.+|+++++.+.+.
T Consensus 2 ~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~~~ 37 (372)
T PRK05868 2 KTVVVSGASVAGTAAAYWLGRHGYSVTMVERHPGLR 37 (372)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCC
Confidence 479999999999999999999999999999987643
|
|
| >TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain | Back alignment and domain information |
|---|
Probab=94.26 E-value=0.11 Score=48.44 Aligned_cols=33 Identities=24% Similarity=0.425 Sum_probs=30.4
Q ss_pred CCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeec
Q 008860 245 PEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQ 277 (551)
Q Consensus 245 ~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~ 277 (551)
+++++|||||.+|..-+..|.+.|++|+++...
T Consensus 9 gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~ 41 (205)
T TIGR01470 9 GRAVLVVGGGDVALRKARLLLKAGAQLRVIAEE 41 (205)
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 579999999999999999999999999999753
|
This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms. |
| >PRK08071 L-aspartate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=94.21 E-value=0.28 Score=52.73 Aligned_cols=55 Identities=13% Similarity=0.149 Sum_probs=36.3
Q ss_pred HHHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEEC--CCe--EEEeeEEEEecCcCCC
Q 008860 289 RDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTN--KGT--VDGFSHVMFATGRRPN 344 (551)
Q Consensus 289 ~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~--~G~--~i~~d~vi~a~G~~p~ 344 (551)
.+.+.+.++ .||+++.++.++++..+++.+..+... +|+ .+.++.||+|+|....
T Consensus 133 ~~~L~~~~~-~gV~i~~~~~v~~Li~~~g~v~Gv~~~~~~g~~~~i~Ak~VVlATGG~~~ 191 (510)
T PRK08071 133 LEHLLQELV-PHVTVVEQEMVIDLIIENGRCIGVLTKDSEGKLKRYYADYVVLASGGCGG 191 (510)
T ss_pred HHHHHHHHh-cCCEEEECeEhhheeecCCEEEEEEEEECCCcEEEEEcCeEEEecCCCcc
Confidence 333444443 478888888888887655444445443 343 5789999999998654
|
|
| >PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed | Back alignment and domain information |
|---|
Probab=94.19 E-value=0.066 Score=55.20 Aligned_cols=35 Identities=14% Similarity=0.189 Sum_probs=32.0
Q ss_pred CeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCcc
Q 008860 246 EKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKV 280 (551)
Q Consensus 246 ~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~ 280 (551)
++|+|||||..|+++|..|++.|.+|++++..+..
T Consensus 3 ~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp~~ 37 (436)
T PRK05335 3 KPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRPVK 37 (436)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCcc
Confidence 57999999999999999999999999999976554
|
|
| >PRK06184 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=94.12 E-value=0.079 Score=56.96 Aligned_cols=36 Identities=17% Similarity=0.218 Sum_probs=32.8
Q ss_pred CeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccC
Q 008860 246 EKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVL 281 (551)
Q Consensus 246 ~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l 281 (551)
-.|+|||+|+.|+-+|..|++.|.+|+++++.+.+.
T Consensus 4 ~dVlIVGaGpaGl~~A~~La~~Gi~v~viE~~~~~~ 39 (502)
T PRK06184 4 TDVLIVGAGPTGLTLAIELARRGVSFRLIEKAPEPF 39 (502)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCC
Confidence 369999999999999999999999999999987653
|
|
| >COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion] | Back alignment and domain information |
|---|
Probab=94.11 E-value=0.069 Score=55.29 Aligned_cols=56 Identities=20% Similarity=0.252 Sum_probs=44.2
Q ss_pred CeEEEEcCcHHHHHHHHHHHhCCCeEEEEeec-CccCCC-CCHHHHHHHHHHHHhcCc
Q 008860 246 EKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQ-KKVLRG-FDEDIRDFVAEQMSLRGI 301 (551)
Q Consensus 246 ~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~-~~~l~~-~~~~~~~~l~~~l~~~Gv 301 (551)
..|+|||+|+.|+-+|..|++.|.+|+++++. ..+.+. -.-.+...-.+.|++.|+
T Consensus 3 ~dV~IvGaG~aGl~lA~~L~~~G~~V~l~E~~~~~~~~~~r~~~l~~~~~~~L~~lG~ 60 (387)
T COG0654 3 LDVAIVGAGPAGLALALALARAGLDVTLLERAPRELLERGRGIALSPNALRALERLGL 60 (387)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCcEEEEccCccccccCceeeeecHhHHHHHHHcCC
Confidence 47999999999999999999999999999998 333332 233445566778888887
|
|
| >PRK06847 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=94.10 E-value=0.093 Score=53.99 Aligned_cols=36 Identities=25% Similarity=0.207 Sum_probs=33.0
Q ss_pred CCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCcc
Q 008860 245 PEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKV 280 (551)
Q Consensus 245 ~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~ 280 (551)
..+|+|||+|+.|+-+|..|++.|.+|+++++.+.+
T Consensus 4 ~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~~~ 39 (375)
T PRK06847 4 VKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDPEW 39 (375)
T ss_pred cceEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCC
Confidence 468999999999999999999999999999987653
|
|
| >PRK08163 salicylate hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=94.05 E-value=0.084 Score=54.78 Aligned_cols=36 Identities=22% Similarity=0.278 Sum_probs=33.3
Q ss_pred CCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCcc
Q 008860 245 PEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKV 280 (551)
Q Consensus 245 ~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~ 280 (551)
+.+|+|||+|..|+-+|..|++.|.+|+++++.+.+
T Consensus 4 ~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~~~ 39 (396)
T PRK08163 4 VTPVLIVGGGIGGLAAALALARQGIKVKLLEQAAEI 39 (396)
T ss_pred CCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCccc
Confidence 468999999999999999999999999999998764
|
|
| >PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate | Back alignment and domain information |
|---|
Probab=93.94 E-value=0.067 Score=47.64 Aligned_cols=29 Identities=28% Similarity=0.416 Sum_probs=28.0
Q ss_pred cEEEECCChHHHHHHHHHHhCCCcEEEEc
Q 008860 74 DLFTIGAGSGGVRASRFAANFGASVAICE 102 (551)
Q Consensus 74 dVvIIGgG~aGl~aA~~l~~~G~~V~liE 102 (551)
+|.|||||..|.++|..|++.|++|.|..
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~ 29 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWG 29 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEET
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEe
Confidence 48999999999999999999999999998
|
This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A .... |
| >TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain | Back alignment and domain information |
|---|
Probab=93.93 E-value=0.11 Score=53.68 Aligned_cols=58 Identities=14% Similarity=0.247 Sum_probs=49.1
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCcCCC
Q 008860 285 DEDIRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPN 344 (551)
Q Consensus 285 ~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~ 344 (551)
+..+...+.+.+++ |++++.++.|.+++.++++ +.|++.+|+.+.+|.||+|+|....
T Consensus 134 p~~~~~~l~~~~~~-G~~i~~~~~V~~i~~~~~~-~~v~t~~g~~~~a~~vV~a~G~~~~ 191 (381)
T TIGR03197 134 PPQLCRALLAHAGI-RLTLHFNTEITSLERDGEG-WQLLDANGEVIAASVVVLANGAQAG 191 (381)
T ss_pred hHHHHHHHHhccCC-CcEEEeCCEEEEEEEcCCe-EEEEeCCCCEEEcCEEEEcCCcccc
Confidence 45677888888888 9999999999999876655 7788888887999999999998654
|
In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein. |
| >COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.91 E-value=0.099 Score=48.18 Aligned_cols=159 Identities=18% Similarity=0.247 Sum_probs=97.9
Q ss_pred CeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCCC-------CC-------------------------------HH
Q 008860 246 EKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRG-------FD-------------------------------ED 287 (551)
Q Consensus 246 ~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~~-------~~-------------------------------~~ 287 (551)
-.|+|+|+|++|+-+|.+|++.|.+|.+++++-.+-.+ |+ .+
T Consensus 31 sDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls~GGG~w~GGmlf~~iVv~~~a~~iL~e~gI~ye~~e~g~~v~ds~e 110 (262)
T COG1635 31 SDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGGGIWGGGMLFNKIVVREEADEILDEFGIRYEEEEDGYYVADSAE 110 (262)
T ss_pred ccEEEECcCcchHHHHHHHHhCCceEEEEEeecccCCcccccccccceeeecchHHHHHHHhCCcceecCCceEEecHHH
Confidence 46999999999999999999999999999987654211 11 11
Q ss_pred HHHHHHHHHHhcCcEEEcCcccEEEEEcCC-ceEEEEEC-----------CCeEEEeeEEEEecCcCCCCCCCCcc---c
Q 008860 288 IRDFVAEQMSLRGIEFHTEESPQAILKSTD-GSLSVKTN-----------KGTVDGFSHVMFATGRRPNTKNLGLE---K 352 (551)
Q Consensus 288 ~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~-~~~~V~~~-----------~G~~i~~d~vi~a~G~~p~~~~l~l~---~ 352 (551)
+...+....-+.|.+++..+.|+++.-.++ ++..|.++ |--.++++.||-|||.....-.+-.+ .
T Consensus 111 ~~skl~~~a~~aGaki~n~~~veDvi~r~~~rVaGvVvNWt~V~~~~lhvDPl~i~a~~VvDaTGHda~v~~~~~kr~~~ 190 (262)
T COG1635 111 FASKLAARALDAGAKIFNGVSVEDVIVRDDPRVAGVVVNWTPVQMAGLHVDPLTIRAKAVVDATGHDAEVVSFLAKRIPE 190 (262)
T ss_pred HHHHHHHHHHhcCceeeecceEEEEEEecCCceEEEEEecchhhhcccccCcceeeEEEEEeCCCCchHHHHHHHHhccc
Confidence 111233333467899999999999877666 44444432 22368999999999986643211011 1
Q ss_pred cCeeecCCCCeEeC--C-----CCCCCCCcEEEeCcCCCC----C---CChHHHHHhHHHHHHHHc
Q 008860 353 VGVKMTKNGAIEVD--E-----YSGTAVPSIWAVGDVTDR----I---NLTPVALMEGGALAKTLF 404 (551)
Q Consensus 353 ~gl~~~~~G~i~vd--~-----~~~t~~~~vya~GD~~~~----~---~~~~~A~~~g~~aa~~i~ 404 (551)
.++++...+..+.+ | +-+--+||+|++|=+++. | +..-.=..+|+.+|+.++
T Consensus 191 l~~~~~Ge~~mw~e~~E~lvV~~T~eV~pgL~vaGMa~~av~G~pRMGPiFGgMllSGkkaAe~i~ 256 (262)
T COG1635 191 LGIEVPGEKSMWAERGEDLVVENTGEVYPGLYVAGMAVNAVHGLPRMGPIFGGMLLSGKKAAEEIL 256 (262)
T ss_pred cccccCCCcchhhhHHHHHHHhccccccCCeEeehhhHHhhcCCcccCchhhhhhhchHHHHHHHH
Confidence 12222222223322 1 222357999999987762 1 111122466777777665
|
|
| >KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=93.86 E-value=0.047 Score=52.88 Aligned_cols=99 Identities=19% Similarity=0.283 Sum_probs=62.4
Q ss_pred CCeEEEEcCcHHHHHHHHHHHh-CCC-eEEEEeecCccC--CCC---CHHHHHH-----HHHHHHhcCcEEEcCcccEEE
Q 008860 245 PEKIAIVGGGYIALEFAGIFSG-LTS-EVHVFIRQKKVL--RGF---DEDIRDF-----VAEQMSLRGIEFHTEESPQAI 312 (551)
Q Consensus 245 ~~~vvViG~G~~g~e~a~~l~~-~g~-~Vtlv~~~~~~l--~~~---~~~~~~~-----l~~~l~~~Gv~i~~~~~v~~i 312 (551)
.-+|+|+|||.-|+.+|..+.+ ++. +|-+++..+.-. |.+ ...+... -+..+--.|.+.+ ...|+++
T Consensus 39 h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e~HyYQPgfTLvGgGl~~l~~srr~~a~liP~~a~wi-~ekv~~f 117 (446)
T KOG3851|consen 39 HFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAEDHYYQPGFTLVGGGLKSLDSSRRKQASLIPKGATWI-KEKVKEF 117 (446)
T ss_pred ceEEEEEcCCcchhHHHHHHHhhcCCCceEEecchhhcccCcceEEeccchhhhhhccCcccccccCCcHHH-HHHHHhc
Confidence 4579999999999999987765 454 677777654321 111 1111110 0001111122222 2467788
Q ss_pred EEcCCceEEEEECCCeEEEeeEEEEecCcCCCCCC
Q 008860 313 LKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNTKN 347 (551)
Q Consensus 313 ~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~~~~ 347 (551)
+++++. |.+.+|++|.+|.+|+|+|..-+-+.
T Consensus 118 ~P~~N~---v~t~gg~eIsYdylviA~Giql~y~~ 149 (446)
T KOG3851|consen 118 NPDKNT---VVTRGGEEISYDYLVIAMGIQLDYGK 149 (446)
T ss_pred CCCcCe---EEccCCcEEeeeeEeeeeeceeccch
Confidence 777655 88999999999999999999876654
|
|
| >KOG2755 consensus Oxidoreductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.83 E-value=0.087 Score=49.70 Aligned_cols=92 Identities=16% Similarity=0.244 Sum_probs=59.4
Q ss_pred EEEEcCcHHHHHHHHHHHhC--CCeEEEEeecCccCCCCCHHHHHHHHHHHHhcCcE----------EE--cCcccEEEE
Q 008860 248 IAIVGGGYIALEFAGIFSGL--TSEVHVFIRQKKVLRGFDEDIRDFVAEQMSLRGIE----------FH--TEESPQAIL 313 (551)
Q Consensus 248 vvViG~G~~g~e~a~~l~~~--g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~----------i~--~~~~v~~i~ 313 (551)
.+|+|||..|+.+|..|+.+ ..+|.++..++-+-.- .--+.+.+++++-.|+ +. .+ .|..+.
T Consensus 2 fivvgggiagvscaeqla~~~psa~illitass~vksv---tn~~~i~~ylekfdv~eq~~~elg~~f~~~~~-~v~~~~ 77 (334)
T KOG2755|consen 2 FIVVGGGIAGVSCAEQLAQLEPSAEILLITASSFVKSV---TNYQKIGQYLEKFDVKEQNCHELGPDFRRFLN-DVVTWD 77 (334)
T ss_pred eEEEcCccccccHHHHHHhhCCCCcEEEEeccHHHHHH---hhHHHHHHHHHhcCccccchhhhcccHHHHHH-hhhhhc
Confidence 57999999999999999876 4578787776532110 1112233444433332 21 11 134443
Q ss_pred EcCCceEEEEECCCeEEEeeEEEEecCcCCCCC
Q 008860 314 KSTDGSLSVKTNKGTVDGFSHVMFATGRRPNTK 346 (551)
Q Consensus 314 ~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~~~ 346 (551)
..+ -.+.+.+|+.+.++.+.+|+|.+|...
T Consensus 78 s~e---hci~t~~g~~~ky~kKOG~tg~kPklq 107 (334)
T KOG2755|consen 78 SSE---HCIHTQNGEKLKYFKLCLCTGYKPKLQ 107 (334)
T ss_pred ccc---ceEEecCCceeeEEEEEEecCCCccee
Confidence 333 448899999999999999999999654
|
|
| >PRK07395 L-aspartate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=93.83 E-value=0.41 Score=51.99 Aligned_cols=56 Identities=18% Similarity=0.162 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHh-cCcEEEcCcccEEEEEcC--CceEEEEE-CCCe--EEEeeEEEEecCcC
Q 008860 287 DIRDFVAEQMSL-RGIEFHTEESPQAILKST--DGSLSVKT-NKGT--VDGFSHVMFATGRR 342 (551)
Q Consensus 287 ~~~~~l~~~l~~-~Gv~i~~~~~v~~i~~~~--~~~~~V~~-~~G~--~i~~d~vi~a~G~~ 342 (551)
.+...+.+.+++ .||+++.++.+.++..++ +.++.|.. .+|+ .+.++.||+|||-.
T Consensus 135 ~i~~~L~~~~~~~~gi~i~~~~~v~~Li~~~~~g~v~Gv~~~~~g~~~~i~AkaVILATGG~ 196 (553)
T PRK07395 135 AIVTTLTEQVLQRPNIEIISQALALSLWLEPETGRCQGISLLYQGQITWLRAGAVILATGGG 196 (553)
T ss_pred HHHHHHHHHHhhcCCcEEEECcChhhheecCCCCEEEEEEEEECCeEEEEEcCEEEEcCCCC
Confidence 344445555554 489999999999987653 33444433 3554 37899999999974
|
|
| >PRK08244 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=93.81 E-value=0.095 Score=56.21 Aligned_cols=35 Identities=26% Similarity=0.352 Sum_probs=32.1
Q ss_pred CeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCcc
Q 008860 246 EKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKV 280 (551)
Q Consensus 246 ~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~ 280 (551)
-.|+|||+|+.|+-+|..|++.|.+|+++++.+..
T Consensus 3 ~dVlIVGaGpaGl~lA~~L~~~G~~v~viEr~~~~ 37 (493)
T PRK08244 3 YEVIIIGGGPVGLMLASELALAGVKTCVIERLKET 37 (493)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence 36999999999999999999999999999998754
|
|
| >PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=93.66 E-value=0.15 Score=53.29 Aligned_cols=36 Identities=25% Similarity=0.375 Sum_probs=32.9
Q ss_pred CCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCcc
Q 008860 245 PEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKV 280 (551)
Q Consensus 245 ~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~ 280 (551)
..+|+|||+|+.|+-+|..|++.|.+|+++++.+..
T Consensus 18 ~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~ 53 (415)
T PRK07364 18 TYDVAIVGGGIVGLTLAAALKDSGLRIALIEAQPAE 53 (415)
T ss_pred ccCEEEECcCHHHHHHHHHHhcCCCEEEEEecCCcc
Confidence 357999999999999999999999999999998754
|
|
| >KOG3923 consensus D-aspartate oxidase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.65 E-value=0.34 Score=46.79 Aligned_cols=48 Identities=10% Similarity=0.257 Sum_probs=34.6
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCcCCCC
Q 008860 285 DEDIRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNT 345 (551)
Q Consensus 285 ~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~~ 345 (551)
.+.+...+.+.|.++|+++... +|.+++.-. .-++|.|+.|+|.....
T Consensus 150 ~~~ylpyl~k~l~e~Gvef~~r-~v~~l~E~~------------~~~~DVivNCtGL~a~~ 197 (342)
T KOG3923|consen 150 GPKYLPYLKKRLTENGVEFVQR-RVESLEEVA------------RPEYDVIVNCTGLGAGK 197 (342)
T ss_pred chhhhHHHHHHHHhcCcEEEEe-eeccHHHhc------------cCCCcEEEECCcccccc
Confidence 4456778999999999999765 565553211 14589999999987654
|
|
| >KOG2853 consensus Possible oxidoreductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.42 E-value=0.6 Score=45.93 Aligned_cols=34 Identities=24% Similarity=0.186 Sum_probs=23.6
Q ss_pred CeEEEEcCcHHHHHHHHHHHhC----CCeEEEEeecCc
Q 008860 246 EKIAIVGGGYIALEFAGIFSGL----TSEVHVFIRQKK 279 (551)
Q Consensus 246 ~~vvViG~G~~g~e~a~~l~~~----g~~Vtlv~~~~~ 279 (551)
..|+|||||.+|...|..|+++ |.+|.++++.+.
T Consensus 87 ~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErddt 124 (509)
T KOG2853|consen 87 CDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDDT 124 (509)
T ss_pred cCEEEECCCccchhhHHHHHHHhhcCCceEEEEeccCc
Confidence 3577788887777777777654 567777776553
|
|
| >PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=93.32 E-value=0.16 Score=52.47 Aligned_cols=35 Identities=23% Similarity=0.301 Sum_probs=32.0
Q ss_pred CeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCcc
Q 008860 246 EKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKV 280 (551)
Q Consensus 246 ~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~ 280 (551)
.+|+|||+|+.|+-+|..|++.|.+|+++++.+..
T Consensus 8 ~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~~~ 42 (388)
T PRK07494 8 TDIAVIGGGPAGLAAAIALARAGASVALVAPEPPY 42 (388)
T ss_pred CCEEEECcCHHHHHHHHHHhcCCCeEEEEeCCCCC
Confidence 47999999999999999999999999999997653
|
|
| >KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.32 E-value=0.16 Score=50.73 Aligned_cols=32 Identities=28% Similarity=0.332 Sum_probs=29.8
Q ss_pred eEEEEcCcHHHHHHHHHHHhCCCeEEEEeecC
Q 008860 247 KIAIVGGGYIALEFAGIFSGLTSEVHVFIRQK 278 (551)
Q Consensus 247 ~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~ 278 (551)
.|+|||+|..|..+|..|.+.|.+|++++|.-
T Consensus 47 DvIIVGAGV~GsaLa~~L~kdGRrVhVIERDl 78 (509)
T KOG1298|consen 47 DVIIVGAGVAGSALAYALAKDGRRVHVIERDL 78 (509)
T ss_pred cEEEECCcchHHHHHHHHhhCCcEEEEEeccc
Confidence 58999999999999999999999999999863
|
|
| >TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit | Back alignment and domain information |
|---|
Probab=93.31 E-value=0.94 Score=49.50 Aligned_cols=52 Identities=15% Similarity=-0.001 Sum_probs=35.6
Q ss_pred HHHHHHh-cCcEEEcCcccEEEEEcCCceEEEE---ECCCe--EEEeeEEEEecCcCC
Q 008860 292 VAEQMSL-RGIEFHTEESPQAILKSTDGSLSVK---TNKGT--VDGFSHVMFATGRRP 343 (551)
Q Consensus 292 l~~~l~~-~Gv~i~~~~~v~~i~~~~~~~~~V~---~~~G~--~i~~d~vi~a~G~~p 343 (551)
+.+.+.+ .||+++.++.+.++..+++.+..+. ..+|+ .+.++.||+|+|...
T Consensus 138 L~~~~~~~~~i~i~~~~~v~~Li~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~ 195 (580)
T TIGR01176 138 LFQTSLTYPQIMRYDEWFVTDLLVDDGRVCGLVAIEMAEGRLVTILADAVVLATGGAG 195 (580)
T ss_pred HHHHHHhcCCCEEEeCeEEEEEEeeCCEEEEEEEEEcCCCcEEEEecCEEEEcCCCCc
Confidence 3444444 4788888888888887655444443 34663 578999999999754
|
The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model. |
| >PRK06718 precorrin-2 dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=93.28 E-value=0.28 Score=45.62 Aligned_cols=70 Identities=17% Similarity=0.183 Sum_probs=0.0
Q ss_pred CCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCCCCCHHHHHHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEE
Q 008860 245 PEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKT 324 (551)
Q Consensus 245 ~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~ 324 (551)
+++++|||+|.+|...+..|.+.|.+|+++.+.. .+.+.+...+..+.+... .+
T Consensus 10 ~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~~----------~~~l~~l~~~~~i~~~~~----------------~~ 63 (202)
T PRK06718 10 NKRVVIVGGGKVAGRRAITLLKYGAHIVVISPEL----------TENLVKLVEEGKIRWKQK----------------EF 63 (202)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEEcCCC----------CHHHHHHHhCCCEEEEec----------------CC
Q ss_pred CCCeEEEeeEEEEecC
Q 008860 325 NKGTVDGFSHVMFATG 340 (551)
Q Consensus 325 ~~G~~i~~d~vi~a~G 340 (551)
.....-.+|.||.||+
T Consensus 64 ~~~~l~~adlViaaT~ 79 (202)
T PRK06718 64 EPSDIVDAFLVIAATN 79 (202)
T ss_pred ChhhcCCceEEEEcCC
|
|
| >PRK09231 fumarate reductase flavoprotein subunit; Validated | Back alignment and domain information |
|---|
Probab=93.23 E-value=0.79 Score=50.17 Aligned_cols=53 Identities=19% Similarity=0.085 Sum_probs=35.6
Q ss_pred HHHHHHh-cCcEEEcCcccEEEEEcCCceEEE---EECCCe--EEEeeEEEEecCcCCC
Q 008860 292 VAEQMSL-RGIEFHTEESPQAILKSTDGSLSV---KTNKGT--VDGFSHVMFATGRRPN 344 (551)
Q Consensus 292 l~~~l~~-~Gv~i~~~~~v~~i~~~~~~~~~V---~~~~G~--~i~~d~vi~a~G~~p~ 344 (551)
+.+.+.+ .+|+++.++.++++..+++.+..+ ...+|+ .+.++.||+|+|....
T Consensus 139 L~~~~~~~~~i~i~~~~~v~~Li~~~g~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~~~ 197 (582)
T PRK09231 139 LFQTSLKYPQIQRFDEHFVLDILVDDGHVRGLVAMNMMEGTLVQIRANAVVMATGGAGR 197 (582)
T ss_pred HHHHhhcCCCcEEEeCeEEEEEEEeCCEEEEEEEEEcCCCcEEEEECCEEEECCCCCcC
Confidence 3333334 378888888888888765543333 335664 6789999999997553
|
|
| >PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=93.22 E-value=0.91 Score=49.75 Aligned_cols=32 Identities=25% Similarity=0.279 Sum_probs=28.3
Q ss_pred CeEEEEcCcHHHHHHHHHHHhCCCeEEEEeec
Q 008860 246 EKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQ 277 (551)
Q Consensus 246 ~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~ 277 (551)
..|+|||+|..|+-.|..+++.|.+|.+++..
T Consensus 4 ~DVlVVG~G~AGl~AAi~Aa~~G~~V~lieK~ 35 (589)
T PRK08641 4 GKVIVVGGGLAGLMATIKAAEAGVHVDLFSLV 35 (589)
T ss_pred ccEEEECchHHHHHHHHHHHHcCCcEEEEEcc
Confidence 36999999999999999999999999999843
|
|
| >PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.14 E-value=0.79 Score=49.37 Aligned_cols=47 Identities=9% Similarity=0.072 Sum_probs=32.0
Q ss_pred cCcEEEcCcccEEEEEcCCceEEEEE-CCCe--EEEee-EEEEecCcCCCC
Q 008860 299 RGIEFHTEESPQAILKSTDGSLSVKT-NKGT--VDGFS-HVMFATGRRPNT 345 (551)
Q Consensus 299 ~Gv~i~~~~~v~~i~~~~~~~~~V~~-~~G~--~i~~d-~vi~a~G~~p~~ 345 (551)
.|++++++++++++..+++.++.|.. .+|+ .+.++ .||+|+|-..+.
T Consensus 187 ~gv~i~~~t~~~~Li~~~g~v~Gv~~~~~g~~~~i~A~k~VIlAtGG~~~n 237 (513)
T PRK12837 187 PNARLRLNTPLVELVVEDGRVVGAVVERGGERRRVRARRGVLLAAGGFEQN 237 (513)
T ss_pred CCCEEEeCCEEEEEEecCCEEEEEEEEECCcEEEEEeCceEEEeCCCccCC
Confidence 38899999999998776554444543 3343 47786 699999876543
|
|
| >PRK07538 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=93.13 E-value=0.14 Score=53.51 Aligned_cols=35 Identities=31% Similarity=0.338 Sum_probs=32.1
Q ss_pred eEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccC
Q 008860 247 KIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVL 281 (551)
Q Consensus 247 ~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l 281 (551)
+|+|||+|+.|+-+|..|++.|.+|+++++.+.+.
T Consensus 2 dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~ 36 (413)
T PRK07538 2 KVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPELR 36 (413)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEEcCCccc
Confidence 68999999999999999999999999999987543
|
|
| >PRK06126 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=93.13 E-value=0.14 Score=55.59 Aligned_cols=36 Identities=22% Similarity=0.279 Sum_probs=32.7
Q ss_pred CCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCcc
Q 008860 245 PEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKV 280 (551)
Q Consensus 245 ~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~ 280 (551)
..+|+|||+|+.|+-+|..|++.|.+|+++++.+..
T Consensus 7 ~~~VlIVGaGpaGL~~Al~La~~G~~v~viEr~~~~ 42 (545)
T PRK06126 7 ETPVLIVGGGPVGLALALDLGRRGVDSILVERKDGT 42 (545)
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCC
Confidence 357999999999999999999999999999988653
|
|
| >PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=92.89 E-value=0.13 Score=46.85 Aligned_cols=29 Identities=28% Similarity=0.399 Sum_probs=26.0
Q ss_pred cEEEECCChHHHHHHHHHHhCCCcEEEEc
Q 008860 74 DLFTIGAGSGGVRASRFAANFGASVAICE 102 (551)
Q Consensus 74 dVvIIGgG~aGl~aA~~l~~~G~~V~liE 102 (551)
+|.|||+|..|...|..++..|++|+++|
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d 29 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEVTLYD 29 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEEEEE-
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcEEEEE
Confidence 48999999999999999999999999999
|
1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B .... |
| >PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ] | Back alignment and domain information |
|---|
Probab=92.89 E-value=0.12 Score=47.43 Aligned_cols=30 Identities=23% Similarity=0.263 Sum_probs=25.4
Q ss_pred ccEEEECCChHHHHHHHHHHhCCCcEEEEc
Q 008860 73 FDLFTIGAGSGGVRASRFAANFGASVAICE 102 (551)
Q Consensus 73 ~dVvIIGgG~aGl~aA~~l~~~G~~V~liE 102 (551)
++|.|||.|..|+..|..+++.|++|+-+|
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~G~~V~g~D 30 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEKGHQVIGVD 30 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHTTSEEEEE-
T ss_pred CEEEEECCCcchHHHHHHHHhCCCEEEEEe
Confidence 369999999999999999999999999999
|
The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D .... |
| >COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=92.89 E-value=0.3 Score=48.66 Aligned_cols=76 Identities=17% Similarity=0.293 Sum_probs=52.7
Q ss_pred eEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCCCCCHHHHHHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEECC
Q 008860 247 KIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTNK 326 (551)
Q Consensus 247 ~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~ 326 (551)
++.|+|+|.+|.-++..|.+.|.+|+++.|.++ .+.+++.|..+..... .. .. ......+
T Consensus 2 kI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~~-------------~~~l~~~GL~i~~~~~--~~----~~-~~~~~~~ 61 (307)
T COG1893 2 KILILGAGAIGSLLGARLAKAGHDVTLLVRSRR-------------LEALKKKGLRIEDEGG--NF----TT-PVVAATD 61 (307)
T ss_pred eEEEECCcHHHHHHHHHHHhCCCeEEEEecHHH-------------HHHHHhCCeEEecCCC--cc----cc-ccccccC
Confidence 689999999999999999999988999888542 3456677888876644 00 00 1111111
Q ss_pred -CeEEEeeEEEEecCcC
Q 008860 327 -GTVDGFSHVMFATGRR 342 (551)
Q Consensus 327 -G~~i~~d~vi~a~G~~ 342 (551)
...-++|.||+++-..
T Consensus 62 ~~~~~~~Dlviv~vKa~ 78 (307)
T COG1893 62 AEALGPADLVIVTVKAY 78 (307)
T ss_pred hhhcCCCCEEEEEeccc
Confidence 1234799999987553
|
|
| >KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=92.85 E-value=0.14 Score=54.56 Aligned_cols=37 Identities=24% Similarity=0.407 Sum_probs=34.2
Q ss_pred CCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCcc
Q 008860 244 KPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKV 280 (551)
Q Consensus 244 ~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~ 280 (551)
..++|+|||+|..|+-+|..|.++|.+|++++.++++
T Consensus 14 ~~~~VIVIGAGiaGLsAArqL~~~G~~V~VLEARdRv 50 (501)
T KOG0029|consen 14 KKKKVIVIGAGLAGLSAARQLQDFGFDVLVLEARDRV 50 (501)
T ss_pred CCCcEEEECCcHHHHHHHHHHHHcCCceEEEeccCCc
Confidence 3568999999999999999999999999999988875
|
|
| >PRK09126 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=92.80 E-value=0.24 Score=51.22 Aligned_cols=56 Identities=23% Similarity=0.271 Sum_probs=42.1
Q ss_pred CeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccC---CC-CCH--HHHHHHHHHHHhcCc
Q 008860 246 EKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVL---RG-FDE--DIRDFVAEQMSLRGI 301 (551)
Q Consensus 246 ~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l---~~-~~~--~~~~~l~~~l~~~Gv 301 (551)
-+|+|||+|+.|+-+|..|++.|.+|+++++.+..- +. ... .+.....+.|++.|+
T Consensus 4 ~dviIvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~g~~i~l~~~~~~~L~~lGl 65 (392)
T PRK09126 4 SDIVVVGAGPAGLSFARSLAGSGLKVTLIERQPLAALADPAFDGREIALTHASREILQRLGA 65 (392)
T ss_pred ccEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCcccccCCCCchhHHHhhHHHHHHHHHCCC
Confidence 369999999999999999999999999999987531 11 111 234455677777776
|
|
| >TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase | Back alignment and domain information |
|---|
Probab=92.75 E-value=0.19 Score=51.76 Aligned_cols=34 Identities=26% Similarity=0.428 Sum_probs=31.3
Q ss_pred eEEEEcCcHHHHHHHHHHHhCC-CeEEEEeecCcc
Q 008860 247 KIAIVGGGYIALEFAGIFSGLT-SEVHVFIRQKKV 280 (551)
Q Consensus 247 ~vvViG~G~~g~e~a~~l~~~g-~~Vtlv~~~~~~ 280 (551)
.|+|||+|+.|+-+|..|.+.| .+|+++++.+..
T Consensus 1 dv~IvGaG~aGl~~A~~L~~~G~~~v~v~E~~~~~ 35 (382)
T TIGR01984 1 DVIIVGGGLVGLSLALALSRLGKIKIALIEANSPS 35 (382)
T ss_pred CEEEECccHHHHHHHHHHhcCCCceEEEEeCCCcc
Confidence 3899999999999999999999 999999998654
|
This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype. |
| >PRK06185 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=92.71 E-value=0.18 Score=52.45 Aligned_cols=56 Identities=21% Similarity=0.331 Sum_probs=40.2
Q ss_pred CeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCCC-CCHHHHHHHHHHHHhcCc
Q 008860 246 EKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRG-FDEDIRDFVAEQMSLRGI 301 (551)
Q Consensus 246 ~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~~-~~~~~~~~l~~~l~~~Gv 301 (551)
.+|+|||+|++|+-+|..|++.|.+|+++++.+..... ....+...-.+.|++.|+
T Consensus 7 ~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~~~~~~~~r~~~l~~~s~~~L~~lG~ 63 (407)
T PRK06185 7 TDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHADFLRDFRGDTVHPSTLELMDELGL 63 (407)
T ss_pred ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccCccccCceeChhHHHHHHHcCC
Confidence 47999999999999999999999999999987643221 111223334455666565
|
|
| >PRK07045 putative monooxygenase; Reviewed | Back alignment and domain information |
|---|
Probab=92.71 E-value=0.19 Score=51.95 Aligned_cols=35 Identities=20% Similarity=0.293 Sum_probs=32.7
Q ss_pred CeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCcc
Q 008860 246 EKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKV 280 (551)
Q Consensus 246 ~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~ 280 (551)
-+|+|||+|+.|+-+|..|++.|.+|+++++.+.+
T Consensus 6 ~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~~~~~ 40 (388)
T PRK07045 6 VDVLINGSGIAGVALAHLLGARGHSVTVVERAARN 40 (388)
T ss_pred eEEEEECCcHHHHHHHHHHHhcCCcEEEEeCCCcc
Confidence 47999999999999999999999999999998865
|
|
| >PRK05562 precorrin-2 dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.70 E-value=0.21 Score=46.96 Aligned_cols=34 Identities=24% Similarity=0.300 Sum_probs=30.5
Q ss_pred CCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeec
Q 008860 244 KPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQ 277 (551)
Q Consensus 244 ~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~ 277 (551)
..++|+|||||.+|..=+..|.+.|++|+++...
T Consensus 24 ~~~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap~ 57 (223)
T PRK05562 24 NKIKVLIIGGGKAAFIKGKTFLKKGCYVYILSKK 57 (223)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCC
Confidence 3679999999999999999999999999999753
|
|
| >COG0029 NadB Aspartate oxidase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=92.65 E-value=0.45 Score=49.33 Aligned_cols=31 Identities=23% Similarity=0.288 Sum_probs=27.6
Q ss_pred eEEEEcCcHHHHHHHHHHHhCCCeEEEEeecC
Q 008860 247 KIAIVGGGYIALEFAGIFSGLTSEVHVFIRQK 278 (551)
Q Consensus 247 ~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~ 278 (551)
.|+|||+|..|+-+|..|.+. .+|+++.+.+
T Consensus 9 dV~IiGsG~AGL~~AL~L~~~-~~V~vltk~~ 39 (518)
T COG0029 9 DVLIIGSGLAGLTAALSLAPS-FRVTVLTKGP 39 (518)
T ss_pred cEEEECCcHHHHHHHHhCCCC-CcEEEEeCCC
Confidence 689999999999999999887 8899998765
|
|
| >PRK05708 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=92.51 E-value=0.6 Score=46.55 Aligned_cols=32 Identities=19% Similarity=0.267 Sum_probs=30.0
Q ss_pred CeEEEEcCcHHHHHHHHHHHhCCCeEEEEeec
Q 008860 246 EKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQ 277 (551)
Q Consensus 246 ~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~ 277 (551)
.++.|+|+|.+|.-+|..|.+.|.+|+++.|.
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~ 34 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARAGLPVRLILRD 34 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhCCCCeEEEEec
Confidence 47999999999999999999999999999985
|
|
| >COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=92.43 E-value=0.16 Score=48.17 Aligned_cols=29 Identities=28% Similarity=0.434 Sum_probs=28.4
Q ss_pred cEEEECCChHHHHHHHHHHhCCCcEEEEc
Q 008860 74 DLFTIGAGSGGVRASRFAANFGASVAICE 102 (551)
Q Consensus 74 dVvIIGgG~aGl~aA~~l~~~G~~V~liE 102 (551)
+++|||+|..|.+.|..|.+.|++|++||
T Consensus 2 ~iiIiG~G~vG~~va~~L~~~g~~Vv~Id 30 (225)
T COG0569 2 KIIIIGAGRVGRSVARELSEEGHNVVLID 30 (225)
T ss_pred EEEEECCcHHHHHHHHHHHhCCCceEEEE
Confidence 69999999999999999999999999999
|
|
| >PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B | Back alignment and domain information |
|---|
Probab=92.39 E-value=0.12 Score=42.41 Aligned_cols=31 Identities=23% Similarity=0.414 Sum_probs=28.7
Q ss_pred CccEEEECCChHHHHHHHHHHhCCCcEEEEc
Q 008860 72 DFDLFTIGAGSGGVRASRFAANFGASVAICE 102 (551)
Q Consensus 72 ~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE 102 (551)
..+|+|||||..|..-+..|.+.|.+|+++.
T Consensus 7 ~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis 37 (103)
T PF13241_consen 7 GKRVLVVGGGPVAARKARLLLEAGAKVTVIS 37 (103)
T ss_dssp T-EEEEEEESHHHHHHHHHHCCCTBEEEEEE
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEC
Confidence 4679999999999999999999999999998
|
|
| >PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=92.35 E-value=0.3 Score=50.88 Aligned_cols=33 Identities=24% Similarity=0.302 Sum_probs=30.9
Q ss_pred CeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecC
Q 008860 246 EKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQK 278 (551)
Q Consensus 246 ~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~ 278 (551)
..|+|||+|+.|+-+|..|++.|.+|+++++.+
T Consensus 3 ~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~ 35 (405)
T PRK05714 3 ADLLIVGAGMVGSALALALQGSGLEVLLLDGGP 35 (405)
T ss_pred ccEEEECccHHHHHHHHHHhcCCCEEEEEcCCC
Confidence 369999999999999999999999999999876
|
|
| >PRK07588 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=92.34 E-value=0.17 Score=52.41 Aligned_cols=34 Identities=24% Similarity=0.282 Sum_probs=31.7
Q ss_pred eEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCcc
Q 008860 247 KIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKV 280 (551)
Q Consensus 247 ~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~ 280 (551)
+|+|||+|+.|+-+|..|++.|.+|+++++.+..
T Consensus 2 ~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~~~~~ 35 (391)
T PRK07588 2 KVAISGAGIAGPTLAYWLRRYGHEPTLIERAPEL 35 (391)
T ss_pred eEEEECccHHHHHHHHHHHHCCCceEEEeCCCCc
Confidence 6899999999999999999999999999988754
|
|
| >PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO) | Back alignment and domain information |
|---|
Probab=92.30 E-value=0.13 Score=53.66 Aligned_cols=30 Identities=30% Similarity=0.465 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCee
Q 008860 82 SGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTC 120 (551)
Q Consensus 82 ~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~ 120 (551)
+|||+||++|++.|++|+|+|+ .+.+||.+
T Consensus 1 iaGL~aA~~L~~~G~~v~vlEa---------~~r~GGr~ 30 (450)
T PF01593_consen 1 IAGLAAAYYLAKAGYDVTVLEA---------SDRVGGRI 30 (450)
T ss_dssp HHHHHHHHHHHHTTTEEEEEES---------SSSSBTTS
T ss_pred ChHHHHHHHHHhCCCCEEEEEc---------CCCCCcce
|
The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A .... |
| >PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=92.15 E-value=0.16 Score=46.34 Aligned_cols=35 Identities=29% Similarity=0.531 Sum_probs=29.5
Q ss_pred eEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccC
Q 008860 247 KIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVL 281 (551)
Q Consensus 247 ~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l 281 (551)
+|.|||+|..|..+|..+...|.+|+++++.+.-+
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~l 35 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSPEAL 35 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSHHHH
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcEEEEECChHHH
Confidence 58999999999999999999999999999876533
|
1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B .... |
| >PRK09077 L-aspartate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=92.06 E-value=1.6 Score=47.40 Aligned_cols=58 Identities=16% Similarity=0.181 Sum_probs=38.7
Q ss_pred HHHHHHHHHHhc-CcEEEcCcccEEEEEcC------CceEEEEE---CCCe--EEEeeEEEEecCcCCCC
Q 008860 288 IRDFVAEQMSLR-GIEFHTEESPQAILKST------DGSLSVKT---NKGT--VDGFSHVMFATGRRPNT 345 (551)
Q Consensus 288 ~~~~l~~~l~~~-Gv~i~~~~~v~~i~~~~------~~~~~V~~---~~G~--~i~~d~vi~a~G~~p~~ 345 (551)
+...+.+.+++. ||+++.++.+.++..++ +.++.|.. .+|+ .+.++.||+|+|.....
T Consensus 140 i~~~L~~~~~~~~~I~v~~~~~v~~Li~~~~~~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VVlATGG~~~~ 209 (536)
T PRK09077 140 VQTTLVERARNHPNITVLERHNAIDLITSDKLGLPGRRVVGAYVLNRNKERVETIRAKFVVLATGGASKV 209 (536)
T ss_pred HHHHHHHHHHhCCCcEEEeeEEeeeeeecccccCCCCEEEEEEEEECCCCcEEEEecCeEEECCCCCCCC
Confidence 444455555444 89999999888877543 34445543 2454 57899999999986643
|
|
| >TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain | Back alignment and domain information |
|---|
Probab=92.00 E-value=0.22 Score=46.41 Aligned_cols=30 Identities=20% Similarity=0.414 Sum_probs=28.8
Q ss_pred ccEEEECCChHHHHHHHHHHhCCCcEEEEc
Q 008860 73 FDLFTIGAGSGGVRASRFAANFGASVAICE 102 (551)
Q Consensus 73 ~dVvIIGgG~aGl~aA~~l~~~G~~V~liE 102 (551)
.+|+|||||..|...+..|.+.|.+|+|++
T Consensus 10 k~vlVvGgG~va~rk~~~Ll~~ga~VtVvs 39 (205)
T TIGR01470 10 RAVLVVGGGDVALRKARLLLKAGAQLRVIA 39 (205)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCEEEEEc
Confidence 479999999999999999999999999998
|
This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms. |
| >PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1 | Back alignment and domain information |
|---|
Probab=91.98 E-value=0.21 Score=45.02 Aligned_cols=30 Identities=30% Similarity=0.450 Sum_probs=27.5
Q ss_pred ccEEEECCChHHHHHHHHHHhCCCcEEEEc
Q 008860 73 FDLFTIGAGSGGVRASRFAANFGASVAICE 102 (551)
Q Consensus 73 ~dVvIIGgG~aGl~aA~~l~~~G~~V~liE 102 (551)
.+|+|+|+|.+|..|+..|...|.+|+++|
T Consensus 21 ~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d 50 (168)
T PF01262_consen 21 AKVVVTGAGRVGQGAAEIAKGLGAEVVVPD 50 (168)
T ss_dssp -EEEEESTSHHHHHHHHHHHHTT-EEEEEE
T ss_pred eEEEEECCCHHHHHHHHHHhHCCCEEEecc
Confidence 579999999999999999999999999999
|
4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A .... |
| >COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=91.96 E-value=0.13 Score=49.73 Aligned_cols=31 Identities=29% Similarity=0.521 Sum_probs=29.4
Q ss_pred CccEEEECCChHHHHHHHHHHhCCCcEEEEc
Q 008860 72 DFDLFTIGAGSGGVRASRFAANFGASVAICE 102 (551)
Q Consensus 72 ~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE 102 (551)
.-+|+|||||.+|..+|..+...|.+|+++|
T Consensus 168 ~~kv~iiGGGvvgtnaAkiA~glgA~Vtild 198 (371)
T COG0686 168 PAKVVVLGGGVVGTNAAKIAIGLGADVTILD 198 (371)
T ss_pred CccEEEECCccccchHHHHHhccCCeeEEEe
Confidence 3589999999999999999999999999999
|
|
| >PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=91.91 E-value=0.17 Score=53.79 Aligned_cols=29 Identities=28% Similarity=0.444 Sum_probs=28.0
Q ss_pred cEEEECCChHHHHHHHHHHhCCCcEEEEc
Q 008860 74 DLFTIGAGSGGVRASRFAANFGASVAICE 102 (551)
Q Consensus 74 dVvIIGgG~aGl~aA~~l~~~G~~V~liE 102 (551)
+|+|||.|++|+++|..|++.|++|+++|
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D 30 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQGWEVVVSD 30 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCEEEEEC
Confidence 48999999999999999999999999999
|
|
| >PRK06719 precorrin-2 dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=91.90 E-value=0.24 Score=43.97 Aligned_cols=31 Identities=23% Similarity=0.237 Sum_probs=29.0
Q ss_pred CccEEEECCChHHHHHHHHHHhCCCcEEEEc
Q 008860 72 DFDLFTIGAGSGGVRASRFAANFGASVAICE 102 (551)
Q Consensus 72 ~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE 102 (551)
..+|+|||||..|..-+..|.+.|.+|+||+
T Consensus 13 ~~~vlVvGGG~va~rka~~Ll~~ga~V~VIs 43 (157)
T PRK06719 13 NKVVVIIGGGKIAYRKASGLKDTGAFVTVVS 43 (157)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEc
Confidence 3579999999999999999999999999997
|
|
| >PRK11883 protoporphyrinogen oxidase; Reviewed | Back alignment and domain information |
|---|
Probab=91.86 E-value=0.21 Score=52.75 Aligned_cols=35 Identities=23% Similarity=0.417 Sum_probs=31.5
Q ss_pred CeEEEEcCcHHHHHHHHHHHhCC--CeEEEEeecCcc
Q 008860 246 EKIAIVGGGYIALEFAGIFSGLT--SEVHVFIRQKKV 280 (551)
Q Consensus 246 ~~vvViG~G~~g~e~a~~l~~~g--~~Vtlv~~~~~~ 280 (551)
++|+|||+|..|+-+|..|++.| .+|++++.++++
T Consensus 1 ~~v~IVGaGiaGL~aA~~L~~~G~~~~V~vlEa~~~~ 37 (451)
T PRK11883 1 KKVAIIGGGITGLSAAYRLHKKGPDADITLLEASDRL 37 (451)
T ss_pred CeEEEECCCHHHHHHHHHHHHhCCCCCEEEEEcCCCC
Confidence 47999999999999999999987 899999987754
|
|
| >PRK04176 ribulose-1,5-biphosphate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=91.85 E-value=0.45 Score=46.14 Aligned_cols=59 Identities=27% Similarity=0.347 Sum_probs=43.9
Q ss_pred CeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCCC-------CCH-HHHHHHHHHHHhcCcEEE
Q 008860 246 EKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRG-------FDE-DIRDFVAEQMSLRGIEFH 304 (551)
Q Consensus 246 ~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~~-------~~~-~~~~~l~~~l~~~Gv~i~ 304 (551)
-.|+|||+|+.|+-+|..+++.|.+|.++++...+... ++. .+.....+.|++.|+.+.
T Consensus 26 ~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~~~Ggg~~~gg~~~~~~~v~~~~~~~l~~~gv~~~ 92 (257)
T PRK04176 26 VDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLSFGGGMWGGGMLFNKIVVQEEADEILDEFGIRYK 92 (257)
T ss_pred CCEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCCccccCccccccccchHHHHHHHHHCCCCce
Confidence 47999999999999999999999999999987654221 111 223345567777887754
|
|
| >PRK08013 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=91.83 E-value=0.29 Score=50.85 Aligned_cols=34 Identities=26% Similarity=0.384 Sum_probs=31.7
Q ss_pred CeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCc
Q 008860 246 EKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKK 279 (551)
Q Consensus 246 ~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~ 279 (551)
.+|+|||+|+.|+-+|..|++.|.+|+++++.+.
T Consensus 4 ~dV~IvGaGpaGl~~A~~La~~G~~v~viE~~~~ 37 (400)
T PRK08013 4 VDVVIAGGGMVGLAVACGLQGSGLRVAVLEQRVP 37 (400)
T ss_pred CCEEEECcCHHHHHHHHHHhhCCCEEEEEeCCCC
Confidence 3699999999999999999999999999999875
|
|
| >PRK07190 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=91.82 E-value=0.26 Score=52.64 Aligned_cols=35 Identities=14% Similarity=0.116 Sum_probs=32.2
Q ss_pred CeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCcc
Q 008860 246 EKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKV 280 (551)
Q Consensus 246 ~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~ 280 (551)
-.|+|||+|+.|+-+|..|++.|.+|.++++.+..
T Consensus 6 ~dVlIVGAGPaGL~lA~~Lar~Gi~V~llEr~~~~ 40 (487)
T PRK07190 6 TDVVIIGAGPVGLMCAYLGQLCGLNTVIVDKSDGP 40 (487)
T ss_pred ceEEEECCCHHHHHHHHHHHHcCCCEEEEeCCCcc
Confidence 47999999999999999999999999999998754
|
|
| >TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family | Back alignment and domain information |
|---|
Probab=91.81 E-value=0.28 Score=50.51 Aligned_cols=34 Identities=24% Similarity=0.347 Sum_probs=31.3
Q ss_pred eEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCcc
Q 008860 247 KIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKV 280 (551)
Q Consensus 247 ~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~ 280 (551)
.|+|||+|+.|+-+|..|++.|.+|+++++.+..
T Consensus 1 dViIvGaG~aGl~~A~~L~~~G~~v~v~Er~~~~ 34 (385)
T TIGR01988 1 DIVIVGGGMVGLALALALARSGLKIALIEATPAE 34 (385)
T ss_pred CEEEECCCHHHHHHHHHHhcCCCEEEEEeCCCcc
Confidence 3899999999999999999999999999998753
|
This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki |
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 551 | ||||
| 3o0h_A | 484 | Crystal Structure Of Glutathione Reductase From Bar | 1e-108 | ||
| 4dna_A | 463 | Crystal Structure Of Putative Glutathione Reductase | 1e-105 | ||
| 2r9z_A | 463 | Glutathione Amide Reductase From Chromatium Gracile | 1e-97 | ||
| 1ger_A | 450 | The Structure Of Glutathione Reductase From Escheri | 8e-96 | ||
| 2jk6_A | 511 | Structure Of Trypanothione Reductase From Leishmani | 8e-94 | ||
| 2x50_A | 510 | Crystal Structure Of Trypanothione Reductase From L | 8e-94 | ||
| 2wba_A | 492 | Properties Of Trypanothione Reductase From T. Bruce | 2e-93 | ||
| 2woi_A | 495 | Trypanothione Reductase From Trypanosoma Brucei Len | 2e-93 | ||
| 1ges_A | 450 | Anatomy Of An Engineered Nad-Binding Site Length = | 2e-91 | ||
| 1gxf_A | 492 | Crystal Structure Of Trypanosoma Cruzi Trypanothion | 7e-91 | ||
| 1bzl_A | 486 | Crystal Structure Of Trypanosoma Cruzi Trypanothion | 7e-91 | ||
| 1aog_A | 485 | Trypanosoma Cruzi Trypanothione Reductase (Oxidized | 1e-90 | ||
| 1nda_A | 491 | The Structure Of Trypanosoma Cruzi Trypanothione Re | 2e-90 | ||
| 1fea_A | 490 | Unliganded Crithidia Fasciculata Trypanothione Redu | 3e-88 | ||
| 1typ_A | 487 | Substrate Interactions Between Trypanothione Reduct | 3e-88 | ||
| 1tyt_A | 487 | Crystal And Molecular Structure Of Crithidia Fascic | 5e-88 | ||
| 2tpr_A | 490 | X-ray Structure Of Trypanothione Reductase From Cri | 2e-87 | ||
| 2grt_A | 461 | Human Glutathione Reductase A34e, R37w Mutant, Oxid | 8e-86 | ||
| 1grt_A | 478 | Human Glutathione Reductase A34eR37W MUTANT Length | 8e-86 | ||
| 1xan_A | 461 | Human Glutathione Reductase In Complex With A Xanth | 4e-83 | ||
| 3djg_X | 477 | Catalytic Cycle Of Human Glutathione Reductase Near | 6e-83 | ||
| 1bwc_A | 478 | Structure Of Human Glutathione Reductase Complexed | 6e-83 | ||
| 2aaq_A | 479 | Crystal Structure Analysis Of The Human Glutahione | 6e-83 | ||
| 2x8c_A | 598 | Thioredoxin Glutathione Reductase From Schistosoma | 9e-83 | ||
| 3h4k_A | 598 | Crystal Structure Of The Wild Type Thioredoxin Glut | 1e-82 | ||
| 2v6o_A | 596 | Structure Of Schistosoma Mansoni Thioredoxin-Glutat | 4e-82 | ||
| 1grg_A | 478 | Substrate Binding And Catalysis By Glutathione Redu | 1e-81 | ||
| 1dnc_A | 478 | Human Glutathione Reductase Modified By Diglutathio | 1e-81 | ||
| 1gsn_A | 478 | Human Glutathione Reductase Modified By Dinitrosogl | 1e-81 | ||
| 1k4q_A | 463 | Human Glutathione Reductase Inactivated By Peroxyni | 2e-80 | ||
| 2hqm_A | 479 | Crystal Structure Of Glutathione Reductase Glr1 Fro | 1e-79 | ||
| 2cfy_A | 521 | Crystal Structure Of Human Thioredoxin Reductase 1 | 2e-77 | ||
| 2j3n_A | 519 | X-Ray Structure Of Human Thioredoxin Reductase 1 Le | 3e-77 | ||
| 3qfa_A | 519 | Crystal Structure Of The Human Thioredoxin Reductas | 3e-77 | ||
| 2zz0_A | 513 | Crystal Structure Of Human Thioredoxin Reductase I | 4e-77 | ||
| 1h6v_A | 499 | Mammalian Thioredoxin Reductase Length = 499 | 5e-75 | ||
| 3ean_A | 499 | Crystal Structure Of Recombinant Rat Selenoprotein | 7e-75 | ||
| 3dgh_A | 483 | Crystal Structure Of Drosophila Thioredoxin Reducta | 9e-74 | ||
| 2nvk_X | 488 | Crystal Structure Of Thioredoxin Reductase From Dro | 1e-73 | ||
| 3dh9_A | 482 | Crystal Structure Of Drosophila Thioredoxin Reducta | 1e-73 | ||
| 3dgz_A | 488 | Crystal Structure Of Mouse Mitochondrial Thioredoxi | 6e-73 | ||
| 1zdl_A | 517 | Crystal Structure Of Mouse Thioredoxin Reductase Ty | 7e-73 | ||
| 1onf_A | 500 | Crystal Structure Of Plasmodium Falciparum Glutathi | 4e-70 | ||
| 4b1b_A | 542 | Crystal Structure Of Plasmodium Falciparum Oxidised | 2e-66 | ||
| 1ebd_A | 455 | Dihydrolipoamide Dehydrogenase Complexed With The B | 3e-54 | ||
| 3lad_A | 476 | Refined Crystal Structure Of Lipoamide Dehydrogenas | 2e-46 | ||
| 1lpf_A | 477 | Three-Dimensional Structure Of Lipoamide Dehydrogen | 4e-45 | ||
| 2eq6_A | 464 | Crystal Structure Of Lipoamide Dehydrogenase From T | 4e-44 | ||
| 1zk7_A | 467 | Crystal Structure Of Tn501 Mera Length = 467 | 2e-40 | ||
| 1dxl_A | 470 | Dihydrolipoamide Dehydrogenase Of Glycine Decarboxy | 6e-40 | ||
| 1lvl_A | 458 | The Refined Structure Of Pseudomonas Putida Lipoami | 8e-40 | ||
| 2eq7_A | 455 | Crystal Structure Of Lipoamide Dehydrogenase From T | 1e-39 | ||
| 2qae_A | 468 | Crystal Structure Analysis Of Trypanosoma Cruzi Lip | 6e-38 | ||
| 1zy8_A | 474 | The Crystal Structure Of Dihydrolipoamide Dehydroge | 3e-37 | ||
| 1zmc_A | 474 | Crystal Structure Of Human Dihydrolipoamide Dehydro | 3e-37 | ||
| 3rnm_A | 495 | The Crystal Structure Of The Subunit Binding Of Hum | 4e-37 | ||
| 3urh_A | 491 | Crystal Structure Of A Dihydrolipoamide Dehydrogena | 7e-36 | ||
| 3ii4_A | 466 | Structure Of Mycobacterial Lipoamide Dehydrogenase | 3e-33 | ||
| 1jeh_A | 478 | Crystal Structure Of Yeast E3, Lipoamide Dehydrogen | 4e-33 | ||
| 2a8x_A | 464 | Crystal Structure Of Lipoamide Dehydrogenase From M | 2e-32 | ||
| 1ojt_A | 482 | Structure Of Dihydrolipoamide Dehydrogenase Length | 6e-31 | ||
| 1bhy_A | 482 | Low Temperature Middle Resolution Structure Of P64k | 1e-30 | ||
| 1xdi_A | 499 | Crystal Structure Of Lpda (Rv3303c) From Mycobacter | 1e-26 | ||
| 3ic9_A | 492 | The Structure Of Dihydrolipoamide Dehydrogenase Fro | 1e-23 | ||
| 3l8k_A | 466 | Crystal Structure Of A Dihydrolipoyl Dehydrogenase | 1e-20 | ||
| 1mo9_A | 523 | Nadph Dependent 2-Ketopropyl Coenzyme M Oxidoreduct | 9e-20 | ||
| 3cgc_A | 480 | Pyridine Nucleotide Complexes With Bacillus Anthrac | 8e-14 | ||
| 1f8w_A | 447 | Crystal Structure Of Nadh Peroxidase Mutant: R303m | 4e-13 | ||
| 3cgb_A | 480 | Pyridine Nucleotide Complexes With Bacillus Anthrac | 9e-13 | ||
| 1nhr_A | 447 | An L40c Mutation Converts The Cysteine-Sulfenic Aci | 1e-12 | ||
| 1nhq_A | 447 | Crystallographic Analyses Of Nadh Peroxidase Cys42a | 1e-12 | ||
| 1nhp_A | 447 | Crystallographic Analyses Of Nadh Peroxidase Cys42a | 1e-12 | ||
| 1nhs_A | 447 | An L40c Mutation Converts The Cysteine-Sulfenic Aci | 1e-12 | ||
| 1joa_A | 447 | Nadh Peroxidase With Cysteine-Sulfenic Acid Length | 2e-12 | ||
| 2bc1_A | 490 | Structural Analysis Of Streptococcus Pyogenes Nadh | 3e-12 | ||
| 2bc0_A | 490 | Structural Analysis Of Streptococcus Pyogenes Nadh | 3e-12 | ||
| 3kd9_A | 449 | Crystal Structure Of Pyridine Nucleotide Disulfide | 4e-11 | ||
| 2cdu_A | 452 | The Crystal Structure Of Water-Forming Nad(P)h Oxid | 7e-11 | ||
| 4emw_A | 436 | Crystal Structure Of Staphylococcus Aureus Bound Wi | 1e-07 | ||
| 4eqs_A | 437 | Crystal Structure Of The Y419f Mutant Of Staphyloco | 2e-07 | ||
| 4eqr_A | 437 | Crystal Structure Of The Y361f Mutant Of Staphyloco | 2e-07 | ||
| 4em3_A | 437 | Crystal Structure Of Staphylococcus Aureus Bound Wi | 2e-07 | ||
| 1yqz_A | 438 | Structure Of Coenzyme A-Disulfide Reductase From St | 2e-07 | ||
| 4eqw_A | 437 | Crystal Structure Of The Y361f, Y419f Mutant Of Sta | 2e-07 | ||
| 4eqx_A | 437 | Crystal Structure Of The C43s Mutant Of Staphylococ | 2e-07 | ||
| 2gr3_A | 408 | Crystal Structure Of Ferredoxin Reductase, Bpha4 (O | 2e-07 | ||
| 1d7y_A | 408 | Crystal Structure Of Nadh-Dependent Ferredoxin Redu | 2e-07 | ||
| 3oc4_A | 452 | Crystal Structure Of A Pyridine Nucleotide-Disulfid | 2e-07 | ||
| 3iwa_A | 472 | Crystal Structure Of A Fad-Dependent Pyridine Nucle | 4e-06 | ||
| 3icr_A | 588 | Crystal Structure Of Oxidized Bacillus Anthracis Co | 5e-06 | ||
| 3ntd_A | 565 | Structure Of The Shewanella Loihica Pv-4 Nadh-Depen | 8e-06 | ||
| 1f6m_A | 320 | Crystal Structure Of A Complex Between Thioredoxin | 2e-04 | ||
| 3lxd_A | 415 | Crystal Structure Of Ferredoxin Reductase Arr From | 2e-04 | ||
| 3nta_A | 574 | Structure Of The Shewanella Loihica Pv-4 Nadh-Depen | 2e-04 | ||
| 1tde_A | 316 | Crystal Structure Of Escherichia Coli Thioredoxin R | 2e-04 | ||
| 1cl0_A | 320 | Crystal Structure Of Reduced Thioredoxin Reductase | 3e-04 | ||
| 3nt6_A | 574 | Structure Of The Shewanella Loihica Pv-4 Nadh-Depen | 3e-04 | ||
| 1tdf_A | 316 | Crystal Structure Of Escherichia Coli Thioredoxin R | 5e-04 | ||
| 1trb_A | 320 | Convergent Evolution Of Similar Function In Two Str | 6e-04 |
| >pdb|3O0H|A Chain A, Crystal Structure Of Glutathione Reductase From Bartonella Henselae Length = 484 | Back alignment and structure |
|
| >pdb|4DNA|A Chain A, Crystal Structure Of Putative Glutathione Reductase From Sinorhizobium Meliloti 1021 Length = 463 | Back alignment and structure |
|
| >pdb|2R9Z|A Chain A, Glutathione Amide Reductase From Chromatium Gracile Length = 463 | Back alignment and structure |
|
| >pdb|1GER|A Chain A, The Structure Of Glutathione Reductase From Escherichia Coli At 1.86 Angstroms Resolution: Comparison With The Enzyme From Human Erythrocytes Length = 450 | Back alignment and structure |
|
| >pdb|2JK6|A Chain A, Structure Of Trypanothione Reductase From Leishmania Infantum Length = 511 | Back alignment and structure |
|
| >pdb|2X50|A Chain A, Crystal Structure Of Trypanothione Reductase From Leishmania Infantum In Complex With Nadph And Silver Length = 510 | Back alignment and structure |
|
| >pdb|2WBA|A Chain A, Properties Of Trypanothione Reductase From T. Brucei Length = 492 | Back alignment and structure |
|
| >pdb|2WOI|A Chain A, Trypanothione Reductase From Trypanosoma Brucei Length = 495 | Back alignment and structure |
|
| >pdb|1GES|A Chain A, Anatomy Of An Engineered Nad-Binding Site Length = 450 | Back alignment and structure |
|
| >pdb|1GXF|A Chain A, Crystal Structure Of Trypanosoma Cruzi Trypanothione Reductase In Complex With The Inhibitor Quinacrine Mustard Length = 492 | Back alignment and structure |
|
| >pdb|1BZL|A Chain A, Crystal Structure Of Trypanosoma Cruzi Trypanothione Reductase In Complex With Trypanothione, And The Structure- Based Discovery Of New Natural Product Inhibitors Length = 486 | Back alignment and structure |
|
| >pdb|1AOG|A Chain A, Trypanosoma Cruzi Trypanothione Reductase (Oxidized Form) Length = 485 | Back alignment and structure |
|
| >pdb|1NDA|A Chain A, The Structure Of Trypanosoma Cruzi Trypanothione Reductase In The Oxidized And Nadph Reduced State Length = 491 | Back alignment and structure |
|
| >pdb|1FEA|A Chain A, Unliganded Crithidia Fasciculata Trypanothione Reductase At 2.2 Angstrom Resolution Length = 490 | Back alignment and structure |
|
| >pdb|1TYP|A Chain A, Substrate Interactions Between Trypanothione Reductase And N1-Glutathionylspermidine Disulphide At 0.28-Nm Resolution Length = 487 | Back alignment and structure |
|
| >pdb|1TYT|A Chain A, Crystal And Molecular Structure Of Crithidia Fasciculata Trypanothione Reductase At 2.6 Angstroms Resolution Length = 487 | Back alignment and structure |
|
| >pdb|2TPR|A Chain A, X-ray Structure Of Trypanothione Reductase From Crithidia Fasciculata At 2.4 Angstroms Resolution Length = 490 | Back alignment and structure |
|
| >pdb|2GRT|A Chain A, Human Glutathione Reductase A34e, R37w Mutant, Oxidized Glutathione Complex Length = 461 | Back alignment and structure |
|
| >pdb|1GRT|A Chain A, Human Glutathione Reductase A34eR37W MUTANT Length = 478 | Back alignment and structure |
|
| >pdb|1XAN|A Chain A, Human Glutathione Reductase In Complex With A Xanthene Inhibitor Length = 461 | Back alignment and structure |
|
| >pdb|3DJG|X Chain X, Catalytic Cycle Of Human Glutathione Reductase Near 1 A Resolution Length = 477 | Back alignment and structure |
|
| >pdb|1BWC|A Chain A, Structure Of Human Glutathione Reductase Complexed With Ajoene Inhibitor And Subversive Substrate Length = 478 | Back alignment and structure |
|
| >pdb|2AAQ|A Chain A, Crystal Structure Analysis Of The Human Glutahione Reductase, Complexed With Gopi Length = 479 | Back alignment and structure |
|
| >pdb|2X8C|A Chain A, Thioredoxin Glutathione Reductase From Schistosoma Mansoni With The Reduced C-Terminal End Length = 598 | Back alignment and structure |
|
| >pdb|3H4K|A Chain A, Crystal Structure Of The Wild Type Thioredoxin Glutatione Reductase From Schistosoma Mansoni In Complex With Auranofin Length = 598 | Back alignment and structure |
|
| >pdb|2V6O|A Chain A, Structure Of Schistosoma Mansoni Thioredoxin-Glutathione Reductase (Smtgr) Length = 596 | Back alignment and structure |
|
| >pdb|1GRG|A Chain A, Substrate Binding And Catalysis By Glutathione Reductase As Derived From Refined Enzyme: Substrate Crystal Structures At 2 Angstroms Resolution Length = 478 | Back alignment and structure |
|
| >pdb|1DNC|A Chain A, Human Glutathione Reductase Modified By Diglutathione-Dinitroso-Iron Length = 478 | Back alignment and structure |
|
| >pdb|1GSN|A Chain A, Human Glutathione Reductase Modified By Dinitrosoglutathione Length = 478 | Back alignment and structure |
|
| >pdb|2HQM|A Chain A, Crystal Structure Of Glutathione Reductase Glr1 From The Yeast Saccharomyces Cerevisiae Length = 479 | Back alignment and structure |
|
| >pdb|2CFY|A Chain A, Crystal Structure Of Human Thioredoxin Reductase 1 Length = 521 | Back alignment and structure |
|
| >pdb|2J3N|A Chain A, X-Ray Structure Of Human Thioredoxin Reductase 1 Length = 519 | Back alignment and structure |
|
| >pdb|3QFA|A Chain A, Crystal Structure Of The Human Thioredoxin Reductase-Thioredoxin Complex Length = 519 | Back alignment and structure |
|
| >pdb|2ZZ0|A Chain A, Crystal Structure Of Human Thioredoxin Reductase I (Secys 498 Cys) Length = 513 | Back alignment and structure |
|
| >pdb|1H6V|A Chain A, Mammalian Thioredoxin Reductase Length = 499 | Back alignment and structure |
|
| >pdb|3EAN|A Chain A, Crystal Structure Of Recombinant Rat Selenoprotein Thioredoxin Reductase 1 With Reduced C-Terminal Tail Length = 499 | Back alignment and structure |
|
| >pdb|3DGH|A Chain A, Crystal Structure Of Drosophila Thioredoxin Reductase, C-Terminal 8- Residue Truncation Length = 483 | Back alignment and structure |
|
| >pdb|2NVK|X Chain X, Crystal Structure Of Thioredoxin Reductase From Drosophila Melanogaster Length = 488 | Back alignment and structure |
|
| >pdb|3DH9|A Chain A, Crystal Structure Of Drosophila Thioredoxin Reductase, Wild-Type Length = 482 | Back alignment and structure |
|
| >pdb|3DGZ|A Chain A, Crystal Structure Of Mouse Mitochondrial Thioredoxin Reductase, C- Terminal 3-Residue Truncation Length = 488 | Back alignment and structure |
|
| >pdb|1ZDL|A Chain A, Crystal Structure Of Mouse Thioredoxin Reductase Type 2 Length = 517 | Back alignment and structure |
|
| >pdb|1ONF|A Chain A, Crystal Structure Of Plasmodium Falciparum Glutathione Reductase Length = 500 | Back alignment and structure |
|
| >pdb|4B1B|A Chain A, Crystal Structure Of Plasmodium Falciparum Oxidised Thioredoxin Reductase At 2.9 Angstrom Length = 542 | Back alignment and structure |
|
| >pdb|1EBD|A Chain A, Dihydrolipoamide Dehydrogenase Complexed With The Binding Domain Of The Dihydrolipoamide Acetylase Length = 455 | Back alignment and structure |
|
| >pdb|3LAD|A Chain A, Refined Crystal Structure Of Lipoamide Dehydrogenase From Azotobacter Vinelandii At 2.2 Angstroms Resolution. A Comparison With The Structure Of Glutathione Reductase Length = 476 | Back alignment and structure |
|
| >pdb|1LPF|A Chain A, Three-Dimensional Structure Of Lipoamide Dehydrogenase From Pseudomonas Fluorescens At 2.8 Angstroms Resolution. Analysis Of Redox And Thermostability Properties Length = 477 | Back alignment and structure |
|
| >pdb|2EQ6|A Chain A, Crystal Structure Of Lipoamide Dehydrogenase From Thermus Thermophilus Hb8 Length = 464 | Back alignment and structure |
|
| >pdb|1ZK7|A Chain A, Crystal Structure Of Tn501 Mera Length = 467 | Back alignment and structure |
|
| >pdb|1DXL|A Chain A, Dihydrolipoamide Dehydrogenase Of Glycine Decarboxylase From Pisum Sativum Length = 470 | Back alignment and structure |
|
| >pdb|1LVL|A Chain A, The Refined Structure Of Pseudomonas Putida Lipoamide Dehydrogenase Complexed With Nad+ At 2.45 Angstroms Resolution Length = 458 | Back alignment and structure |
|
| >pdb|2EQ7|A Chain A, Crystal Structure Of Lipoamide Dehydrogenase From Thermus Thermophilus Hb8 With Psbdo Length = 455 | Back alignment and structure |
|
| >pdb|2QAE|A Chain A, Crystal Structure Analysis Of Trypanosoma Cruzi Lipoamide Dehydrogenase Length = 468 | Back alignment and structure |
|
| >pdb|1ZY8|A Chain A, The Crystal Structure Of Dihydrolipoamide Dehydrogenase And Dihydrolipoamide Dehydrogenase-Binding Protein (Didomain) Subcomplex Of Human Pyruvate Dehydrogenase Complex. Length = 474 | Back alignment and structure |
|
| >pdb|1ZMC|A Chain A, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase Complexed To Nad+ Length = 474 | Back alignment and structure |
|
| >pdb|3RNM|A Chain A, The Crystal Structure Of The Subunit Binding Of Human Dihydrolipoamide Transacylase (E2b) Bound To Human Dihydrolipoamide Dehydrogenase (E3) Length = 495 | Back alignment and structure |
|
| >pdb|3URH|A Chain A, Crystal Structure Of A Dihydrolipoamide Dehydrogenase From Sinorhizobium Meliloti 1021 Length = 491 | Back alignment and structure |
|
| >pdb|3II4|A Chain A, Structure Of Mycobacterial Lipoamide Dehydrogenase Bound To A Triazaspirodimethoxybenzoyl Inhibitor Length = 466 | Back alignment and structure |
|
| >pdb|1JEH|A Chain A, Crystal Structure Of Yeast E3, Lipoamide Dehydrogenase Length = 478 | Back alignment and structure |
|
| >pdb|2A8X|A Chain A, Crystal Structure Of Lipoamide Dehydrogenase From Mycobacterium Tuberculosis Length = 464 | Back alignment and structure |
|
| >pdb|1OJT|A Chain A, Structure Of Dihydrolipoamide Dehydrogenase Length = 482 | Back alignment and structure |
|
| >pdb|1BHY|A Chain A, Low Temperature Middle Resolution Structure Of P64k From Masc Data Length = 482 | Back alignment and structure |
|
| >pdb|1XDI|A Chain A, Crystal Structure Of Lpda (Rv3303c) From Mycobacterium Tuberculosis Length = 499 | Back alignment and structure |
|
| >pdb|3IC9|A Chain A, The Structure Of Dihydrolipoamide Dehydrogenase From Colwellia Psychrerythraea 34h. Length = 492 | Back alignment and structure |
|
| >pdb|3L8K|A Chain A, Crystal Structure Of A Dihydrolipoyl Dehydrogenase From Sulfolobus Solfataricus Length = 466 | Back alignment and structure |
|
| >pdb|1MO9|A Chain A, Nadph Dependent 2-Ketopropyl Coenzyme M OxidoreductaseCARBOXYLASE Complexed With 2-Ketopropyl Coenzyme M Length = 523 | Back alignment and structure |
|
| >pdb|3CGC|A Chain A, Pyridine Nucleotide Complexes With Bacillus Anthracis Coenzyme A- Disulfide Reductase: A Structural Analysis Of Dual Nad(p)h Specificity Length = 480 | Back alignment and structure |
|
| >pdb|1F8W|A Chain A, Crystal Structure Of Nadh Peroxidase Mutant: R303m Length = 447 | Back alignment and structure |
|
| >pdb|3CGB|A Chain A, Pyridine Nucleotide Complexes With Bacillus Anthracis Coenzyme A- Disulfide Reductase: A Structural Analysis Of Dual Nad(P)h Specificity Length = 480 | Back alignment and structure |
|
| >pdb|1NHR|A Chain A, An L40c Mutation Converts The Cysteine-Sulfenic Acid Redox Centre In Enterococcal Nadh Peroxidase To A Disulfide Length = 447 | Back alignment and structure |
|
| >pdb|1NHQ|A Chain A, Crystallographic Analyses Of Nadh Peroxidase Cys42ala And Cys42ser Mutants: Active Site Structure, Mechanistic Implications, And An Unusual Environment Of Arg303 Length = 447 | Back alignment and structure |
|
| >pdb|1NHP|A Chain A, Crystallographic Analyses Of Nadh Peroxidase Cys42ala And Cys42ser Mutants: Active Site Structure, Mechanistic Implications, And An Unusual Environment Of Arg303 Length = 447 | Back alignment and structure |
|
| >pdb|1NHS|A Chain A, An L40c Mutation Converts The Cysteine-Sulfenic Acid Redox Centre In Enterococcal Nadh Peroxidase To A Disulfide Length = 447 | Back alignment and structure |
|
| >pdb|1JOA|A Chain A, Nadh Peroxidase With Cysteine-Sulfenic Acid Length = 447 | Back alignment and structure |
|
| >pdb|2BC1|A Chain A, Structural Analysis Of Streptococcus Pyogenes Nadh Oxidase: C44s Nox Length = 490 | Back alignment and structure |
|
| >pdb|2BC0|A Chain A, Structural Analysis Of Streptococcus Pyogenes Nadh Oxidase: Wild-Type Nox Length = 490 | Back alignment and structure |
|
| >pdb|3KD9|A Chain A, Crystal Structure Of Pyridine Nucleotide Disulfide Oxidoreductase From Pyrococcus Horikoshii Length = 449 | Back alignment and structure |
|
| >pdb|2CDU|A Chain A, The Crystal Structure Of Water-Forming Nad(P)h Oxidase From Lactobacillus Sanfranciscensis Length = 452 | Back alignment and structure |
|
| >pdb|4EMW|A Chain A, Crystal Structure Of Staphylococcus Aureus Bound With The Covalent Inhibitor Etvc-Coa Length = 436 | Back alignment and structure |
|
| >pdb|4EQS|A Chain A, Crystal Structure Of The Y419f Mutant Of Staphylococcus Aureus Coadr Length = 437 | Back alignment and structure |
|
| >pdb|4EQR|A Chain A, Crystal Structure Of The Y361f Mutant Of Staphylococcus Aureus Coadr Length = 437 | Back alignment and structure |
|
| >pdb|4EM3|A Chain A, Crystal Structure Of Staphylococcus Aureus Bound With The Covalent Inhibitor Mevs-Coa Length = 437 | Back alignment and structure |
|
| >pdb|1YQZ|A Chain A, Structure Of Coenzyme A-Disulfide Reductase From Staphylococcus Aureus Refined At 1.54 Angstrom Resolution Length = 438 | Back alignment and structure |
|
| >pdb|4EQW|A Chain A, Crystal Structure Of The Y361f, Y419f Mutant Of Staphylococcus Aureus Coadr Length = 437 | Back alignment and structure |
|
| >pdb|4EQX|A Chain A, Crystal Structure Of The C43s Mutant Of Staphylococcus Aureus Coadr Length = 437 | Back alignment and structure |
|
| >pdb|2GR3|A Chain A, Crystal Structure Of Ferredoxin Reductase, Bpha4 (Oxidized Form) Length = 408 | Back alignment and structure |
|
| >pdb|1D7Y|A Chain A, Crystal Structure Of Nadh-Dependent Ferredoxin Reductase, Bpha4 Length = 408 | Back alignment and structure |
|
| >pdb|3OC4|A Chain A, Crystal Structure Of A Pyridine Nucleotide-Disulfide Family Oxidoreductase From The Enterococcus Faecalis V583 Length = 452 | Back alignment and structure |
|
| >pdb|3IWA|A Chain A, Crystal Structure Of A Fad-Dependent Pyridine Nucleotide-Disulphide Oxidoreductase From Desulfovibrio Vulgaris Length = 472 | Back alignment and structure |
|
| >pdb|3ICR|A Chain A, Crystal Structure Of Oxidized Bacillus Anthracis Coadr-Rhd Length = 588 | Back alignment and structure |
|
| >pdb|3NTD|A Chain A, Structure Of The Shewanella Loihica Pv-4 Nadh-Dependent Persulfide Reductase C531s Mutant Length = 565 | Back alignment and structure |
|
| >pdb|1F6M|A Chain A, Crystal Structure Of A Complex Between Thioredoxin Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+ Length = 320 | Back alignment and structure |
|
| >pdb|3LXD|A Chain A, Crystal Structure Of Ferredoxin Reductase Arr From Novosphingobium Aromaticivorans Length = 415 | Back alignment and structure |
|
| >pdb|3NTA|A Chain A, Structure Of The Shewanella Loihica Pv-4 Nadh-Dependent Persulfide Reductase Length = 574 | Back alignment and structure |
|
| >pdb|1TDE|A Chain A, Crystal Structure Of Escherichia Coli Thioredoxin Reductase Refined At 2 Angstrom Resolution: Implications For A Large Conformational Change During Catalysis Length = 316 | Back alignment and structure |
|
| >pdb|1CL0|A Chain A, Crystal Structure Of Reduced Thioredoxin Reductase From Escherichia Coli Length = 320 | Back alignment and structure |
|
| >pdb|3NT6|A Chain A, Structure Of The Shewanella Loihica Pv-4 Nadh-Dependent Persulfide Reductase C43sC531S DOUBLE MUTANT Length = 574 | Back alignment and structure |
|
| >pdb|1TDF|A Chain A, Crystal Structure Of Escherichia Coli Thioredoxin Reductase Refined At 2 Angstrom Resolution: Implications For A Large Conformational Change During Catalysis Length = 316 | Back alignment and structure |
|
| >pdb|1TRB|A Chain A, Convergent Evolution Of Similar Function In Two Structurally Divergent Enzymes Length = 320 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 551 | |||
| 3o0h_A | 484 | Glutathione reductase; ssgcid, structur genomics, | 0.0 | |
| 1fec_A | 490 | Trypanothione reductase; redox-active center, oxid | 0.0 | |
| 2wpf_A | 495 | Trypanothione reductase; oxidoreductase, trypanoso | 0.0 | |
| 4dna_A | 463 | Probable glutathione reductase; structural genomic | 0.0 | |
| 2r9z_A | 463 | Glutathione amide reductase; NAD, FAD, substrate s | 0.0 | |
| 1ges_A | 450 | Glutathione reductase; oxidoreductase(flavoenzyme) | 0.0 | |
| 3dk9_A | 478 | Grase, GR, glutathione reductase; flavoenzyme, nic | 0.0 | |
| 3dgh_A | 483 | TRXR-1, thioredoxin reductase 1, mitochondrial; ox | 0.0 | |
| 2hqm_A | 479 | GR, grase, glutathione reductase; glutathione redu | 0.0 | |
| 3qfa_A | 519 | Thioredoxin reductase 1, cytoplasmic; protein-prot | 0.0 | |
| 3dgz_A | 488 | Thioredoxin reductase 2; oxidoreductase, rossmann, | 0.0 | |
| 2x8g_A | 598 | Thioredoxin glutathione reductase; redox-active ce | 0.0 | |
| 1onf_A | 500 | GR, grase, glutathione reductase; oxidoreductase; | 0.0 | |
| 1mo9_A | 523 | ORF3; nucleotide binding motifs, nucleotide bindin | 1e-159 | |
| 1zk7_A | 467 | HGII, reductase, mercuric reductase; mercuric ION | 1e-110 | |
| 1xdi_A | 499 | RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun | 3e-98 | |
| 2a8x_A | 464 | Dihydrolipoyl dehydrogenase, E3 component of alpha | 5e-93 | |
| 3ic9_A | 492 | Dihydrolipoamide dehydrogenase; APC62701, colwelli | 1e-92 | |
| 2yqu_A | 455 | 2-oxoglutarate dehydrogenase E3 component; lipoami | 4e-89 | |
| 1dxl_A | 470 | Dihydrolipoamide dehydrogenase; oxidoreductase, mu | 3e-86 | |
| 1lvl_A | 458 | Dihydrolipoamide dehydrogenase; oxidoreductase; HE | 6e-86 | |
| 1ebd_A | 455 | E3BD, dihydrolipoamide dehydrogenase; redox-active | 1e-84 | |
| 3urh_A | 491 | Dihydrolipoyl dehydrogenase; PSI-biology, structur | 2e-84 | |
| 2eq6_A | 464 | Pyruvate dehydrogenase complex, dihydrolipoamide d | 6e-84 | |
| 3lad_A | 476 | Dihydrolipoamide dehydrogenase; oxidoreductase; HE | 1e-81 | |
| 1ojt_A | 482 | Surface protein; redox-active center, glycolysis, | 5e-81 | |
| 1v59_A | 478 | Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog | 3e-80 | |
| 2qae_A | 468 | Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin | 4e-80 | |
| 1zmd_A | 474 | Dihydrolipoyl dehydrogenase; lipoamide dehydrogena | 8e-79 | |
| 3l8k_A | 466 | Dihydrolipoyl dehydrogenase; redox-active center, | 5e-76 | |
| 2cdu_A | 452 | NADPH oxidase; flavoenzyme, oxidoreductase; HET: F | 3e-39 | |
| 3oc4_A | 452 | Oxidoreductase, pyridine nucleotide-disulfide FAM; | 5e-38 | |
| 3cgb_A | 480 | Pyridine nucleotide-disulfide oxidoreductase, CLA; | 6e-38 | |
| 3kd9_A | 449 | Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o | 2e-37 | |
| 2bc0_A | 490 | NADH oxidase; flavoprotein, pyridine nucleotide di | 3e-37 | |
| 3iwa_A | 472 | FAD-dependent pyridine nucleotide-disulphide oxido | 2e-36 | |
| 1nhp_A | 447 | NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA | 3e-36 | |
| 3ics_A | 588 | Coenzyme A-disulfide reductase; pyridine nucleotid | 1e-35 | |
| 3ntd_A | 565 | FAD-dependent pyridine nucleotide-disulphide oxido | 1e-33 | |
| 1yqz_A | 438 | Coenzyme A disulfide reductase; oxidoreductase; HE | 1e-32 | |
| 2v3a_A | 384 | Rubredoxin reductase; alkane degradation, NADH oxi | 4e-22 | |
| 3klj_A | 385 | NAD(FAD)-dependent dehydrogenase, NIRB-family (N- | 8e-22 | |
| 3fg2_P | 404 | Putative rubredoxin reductase; ferredoxin reductas | 8e-21 | |
| 1xhc_A | 367 | NADH oxidase /nitrite reductase; southe collaborat | 1e-20 | |
| 3lxd_A | 415 | FAD-dependent pyridine nucleotide-disulphide oxido | 6e-20 | |
| 3ef6_A | 410 | Toluene 1,2-dioxygenase system ferredoxin--NAD(+) | 5e-19 | |
| 1q1r_A | 431 | Putidaredoxin reductase; glutathione reductase fol | 1e-18 | |
| 4fk1_A | 304 | Putative thioredoxin reductase; structural genomic | 4e-18 | |
| 1m6i_A | 493 | Programmed cell death protein 8; apoptosis, AIF, o | 9e-18 | |
| 2gqw_A | 408 | Ferredoxin reductase; flavoprotein, oxidoreductase | 2e-17 | |
| 3fbs_A | 297 | Oxidoreductase; structural genomics, PSI2, MCSG, p | 5e-15 | |
| 3cty_A | 319 | Thioredoxin reductase; FAD, oxidoreductase, flavin | 4e-12 | |
| 3d1c_A | 369 | Flavin-containing putative monooxygenase; NP_37310 | 3e-09 | |
| 1hyu_A | 521 | AHPF, alkyl hydroperoxide reductase subunit F; thi | 4e-09 | |
| 3f8d_A | 323 | Thioredoxin reductase (TRXB-3); redox protein, nuc | 2e-08 | |
| 2zbw_A | 335 | Thioredoxin reductase; redox protein, oxidoreducta | 2e-08 | |
| 1fl2_A | 310 | Alkyl hydroperoxide reductase subunit F; reactive | 4e-08 | |
| 3lzw_A | 332 | Ferredoxin--NADP reductase 2; ferredoxin reductase | 7e-08 | |
| 3r9u_A | 315 | Thioredoxin reductase; structural genomics, center | 9e-08 | |
| 2q0l_A | 311 | TRXR, thioredoxin reductase; bacterial thiredoxin | 2e-07 | |
| 3ab1_A | 360 | Ferredoxin--NADP reductase; oxidoreductase, electr | 7e-07 | |
| 2q7v_A | 325 | Thioredoxin reductase; rossman fold, FAD, flavopro | 2e-06 | |
| 1vdc_A | 333 | NTR, NADPH dependent thioredoxin reductase; hypoth | 3e-06 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 4e-06 | |
| 3s5w_A | 463 | L-ornithine 5-monooxygenase; class B flavin depend | 6e-06 | |
| 1ps9_A | 671 | 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel | 6e-06 | |
| 2a87_A | 335 | TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL | 1e-05 | |
| 3h8l_A | 409 | NADH oxidase; membrane protein, complete form, ros | 2e-05 | |
| 3itj_A | 338 | Thioredoxin reductase 1; disulfide B flavoprotein, | 4e-05 | |
| 1o94_A | 729 | Tmadh, trimethylamine dehydrogenase; electron tran | 6e-05 | |
| 3k30_A | 690 | Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi | 1e-04 | |
| 1gte_A | 1025 | Dihydropyrimidine dehydrogenase; electron transfer | 2e-04 | |
| 1trb_A | 320 | Thioredoxin reductase; oxidoreductase(flavoenzyme) | 2e-04 | |
| 4a9w_A | 357 | Monooxygenase; baeyer-villiger, FAD, oxidoreductas | 3e-04 |
| >3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae} Length = 484 | Back alignment and structure |
|---|
Score = 752 bits (1943), Expect = 0.0
Identities = 206/486 (42%), Positives = 279/486 (57%), Gaps = 15/486 (3%)
Query: 51 RRRHVAARAKSDNGAELPSHYDFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISS 110
H+ G +DFDLF IG+GSGGVRA+R A G VAI E
Sbjct: 5 HHHHMGTLEAQTQGPGSMGSFDFDLFVIGSGSGGVRAARLAGALGKRVAIAE-------- 56
Query: 111 ETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDESNGFGWKYGTEPQHDWSTLIANKNAEL 170
+GGTCV+RGCVPKKL YAS+++ EF +S GFGWKY +P +W L+A KN E+
Sbjct: 57 --EYRIGGTCVIRGCVPKKLYFYASQYAQEFSKSIGFGWKYA-DPIFNWEKLVAAKNKEI 113
Query: 171 QRLTGIYKNILINAGITLIEGRGKIVDPHTVDV--DGKLYSARHILISVGGRPF-IPDIP 227
RL G+Y+ L N+ + + E R VD HT+++ G+ SA ILI+ G + I
Sbjct: 114 SRLEGLYREGLQNSNVHIYESRAVFVDEHTLELSVTGERISAEKILIATGAKIVSNSAIK 173
Query: 228 GSEYAIDSDAALDLPSKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDED 287
GS+ + S+ DL P+ I IVGGGYI +EFA IF GL + + R +LR FD D
Sbjct: 174 GSDLCLTSNEIFDLEKLPKSIVIVGGGYIGVEFANIFHGLGVKTTLLHRGDLILRNFDYD 233
Query: 288 IRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNTKN 347
+R + + M +GI E + + T+ +V G VM ATGR PNT
Sbjct: 234 LRQLLNDAMVAKGISIIYEATVSQVQS-TENCYNVVLTNGQTICADRVMLATGRVPNTTG 292
Query: 348 LGLEKVGVKMTKNGAIEVDEYSGTAVPSIWAVGDVTDRINLTPVALMEGGALAKTLFQAE 407
LGLE+ GVK+ + GA+ VDE T V IWAVGDVT I LTPVA+ + K F+
Sbjct: 293 LGLERAGVKVNEFGAVVVDEKMTTNVSHIWAVGDVTGHIQLTPVAIHDAMCFVKNAFENT 352
Query: 408 PTKPDYSAVPSAVFSQPPIGQVGLSEEQAIQEYGDIDVFTANFRPLKATLSGLPDRIFMK 467
T PDY + +AVFSQP IG VGLSEE A+ Y ++++ FRP++ LSG P+++FMK
Sbjct: 353 STTPDYDLITTAVFSQPEIGTVGLSEEDALHRYKRVEIYRTVFRPMRNVLSGSPEKMFMK 412
Query: 468 LVLCAKTNKVLGLHMCGEDAPEIVQGFAVAVKAGLTKADFDATVGVHPTAAEEFVTLRTP 527
LV+ ++ V+G H+ GE+A EI Q +++K LTK FD T+ VHPT +EE VT+ P
Sbjct: 413 LVVDGESRIVVGAHVLGENAGEIAQLIGISLKGKLTKDIFDKTMAVHPTMSEELVTMYKP 472
Query: 528 TRKIRK 533
+
Sbjct: 473 SYVYEN 478
|
| >1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A* Length = 490 | Back alignment and structure |
|---|
Score = 742 bits (1919), Expect = 0.0
Identities = 188/484 (38%), Positives = 268/484 (55%), Gaps = 17/484 (3%)
Query: 71 YDFDLFTIGAGSGGVRASRFAANF-GASVAICELPFSTISSETTGGVGGTCVLRGCVPKK 129
+DL IGAGSGG+ A AA+ VA+ +L +GGTCV GCVPKK
Sbjct: 2 RAYDLVVIGAGSGGLEAGWNAASLHKKRVAVIDLQKHH-GPPHYAALGGTCVNVGCVPKK 60
Query: 130 LLVYASKFSHEFDESNGFGWKYGTE-PQHDWSTLIANKNAELQRLTGIYKNILINA-GIT 187
L+V + + ES GFGW+ E + +W LIA KN + + Y+ + + G+T
Sbjct: 61 LMVTGANYMDTIRESAGFGWELDRESVRPNWKALIAAKNKAVSGINDSYEGMFADTEGLT 120
Query: 188 LIEGRGKIVDPHTVDVDG---------KLYSARHILISVGGRPFIPDIPGSEYAIDSDAA 238
+G G + D HTV V + +IL++ G P I G + I S+ A
Sbjct: 121 FHQGFGALQDNHTVLVRESADPNSAVLETLDTEYILLATGSWPQHLGIEGDDLCITSNEA 180
Query: 239 LDLPSKPEKIAIVGGGYIALEFAGIFSGLT---SEVHVFIRQKKVLRGFDEDIRDFVAEQ 295
L P++ VGGGYI++EFAGIF+ +V + R +LRGFD ++R + EQ
Sbjct: 181 FYLDEAPKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMILRGFDSELRKQLTEQ 240
Query: 296 MSLRGIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNTKNLGLEKVGV 355
+ GI T E+P + K+ DG+ V G + VM A GR P ++ L LEK GV
Sbjct: 241 LRANGINVRTHENPAKVTKNADGTRHVVFESGAEADYDVVMLAIGRVPRSQTLQLEKAGV 300
Query: 356 KMTKNGAIEVDEYSGTAVPSIWAVGDVTDRINLTPVALMEGGALAKTLFQAEPTKPDYSA 415
++ KNGAI+VD YS T V +I+A+GDVTDR+ LTPVA+ EG A T+F +P D++
Sbjct: 301 EVAKNGAIKVDAYSKTNVDNIYAIGDVTDRVMLTPVAINEGAAFVDTVFANKPRATDHTK 360
Query: 416 VPSAVFSQPPIGQVGLSEEQAIQEYGDIDVFTANFRPLKATLSGLPDRIFM-KLVLCAKT 474
V AVFS PP+G G EE A ++Y + V+ ++F PL +SG + FM ++V
Sbjct: 361 VACAVFSIPPMGVCGYVEEDAAKKYDQVAVYESSFTPLMHNISGSTYKKFMVRIVTNHAD 420
Query: 475 NKVLGLHMCGEDAPEIVQGFAVAVKAGLTKADFDATVGVHPTAAEEFVTLRTPTRKIRKS 534
+VLG+HM G+ +PEI+Q A+ +K G +DF T+GVHPT+AEE ++RTP K
Sbjct: 421 GEVLGVHMLGDSSPEIIQSVAICLKMGAKISDFYNTIGVHPTSAEELCSMRTPAYFYEKG 480
Query: 535 PPSE 538
E
Sbjct: 481 KRVE 484
|
| >2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A* Length = 495 | Back alignment and structure |
|---|
Score = 742 bits (1918), Expect = 0.0
Identities = 196/491 (39%), Positives = 279/491 (56%), Gaps = 17/491 (3%)
Query: 71 YDFDLFTIGAGSGGVRASRFAAN-FGASVAICELPFSTISSETTGGVGGTCVLRGCVPKK 129
FDL IGAGSGG+ A AA +G VA+ ++ S +GGTCV GCVPKK
Sbjct: 6 KAFDLVVIGAGSGGLEAGWNAATLYGKRVAVVDVQTSH-GPPFYAALGGTCVNVGCVPKK 64
Query: 130 LLVYASKFSHEFDESNGFGWKY-GTEPQHDWSTLIANKNAELQRLTGIYKNILINA-GIT 187
L+V +++ ES GFGW++ G+ + +W LIA KN + + Y+ + + G+
Sbjct: 65 LMVTGAQYMDHLRESAGFGWEFDGSSVKANWKKLIAAKNEAVLDINKSYEGMFNDTEGLD 124
Query: 188 LIEGRGKIVDPHTVDVD---------GKLYSARHILISVGGRPFIPDIPGSEYAIDSDAA 238
G G + + V V + A HIL++ G P +P IPG E+ I S+ A
Sbjct: 125 FFLGWGSLESKNVVVVRETADPKSAVKERLQADHILLATGSWPQMPAIPGIEHCISSNEA 184
Query: 239 LDLPSKPEKIAIVGGGYIALEFAGIFSGLT---SEVHVFIRQKKVLRGFDEDIRDFVAEQ 295
LP P ++ VGGG+I++EFAGIF+ +V + R +LRGFDE IR+ V +Q
Sbjct: 185 FYLPEPPRRVLTVGGGFISVEFAGIFNAYKPPGGKVTLCYRNNLILRGFDETIREEVTKQ 244
Query: 296 MSLRGIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNTKNLGLEKVGV 355
++ GIE T E+P + +TDGS V G VM A GR P T +L L VGV
Sbjct: 245 LTANGIEIMTNENPAKVSLNTDGSKHVTFESGKTLDVDVVMMAIGRIPRTNDLQLGNVGV 304
Query: 356 KMTKNGAIEVDEYSGTAVPSIWAVGDVTDRINLTPVALMEGGALAKTLFQAEPTKPDYSA 415
K+T G ++VDE+S T VP+I+A+GD+TDR+ LTPVA+ EG AL T+F +P K D++
Sbjct: 305 KLTPKGGVQVDEFSRTNVPNIYAIGDITDRLMLTPVAINEGAALVDTVFGNKPRKTDHTR 364
Query: 416 VPSAVFSQPPIGQVGLSEEQAIQEYGDIDVFTANFRPLKATLSGLPDRIF-MKLVLCAKT 474
V SAVFS PPIG GL EE A +E+ + V+ ++F PL +SG + F K+V
Sbjct: 365 VASAVFSIPPIGTCGLIEEVAAKEFEKVAVYMSSFTPLMHNISGSKYKKFVAKIVTNHSD 424
Query: 475 NKVLGLHMCGEDAPEIVQGFAVAVKAGLTKADFDATVGVHPTAAEEFVTLRTPTRKIRKS 534
VLG+H+ G+ APEI+Q V ++ +DF T+GVHPT+AEE ++RTP+ K
Sbjct: 425 GTVLGVHLLGDGAPEIIQAVGVCLRLNAKISDFYNTIGVHPTSAEELCSMRTPSYYYVKG 484
Query: 535 PPSEGMTGPEV 545
E + +
Sbjct: 485 EKMEKLPDSNL 495
|
| >4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti} Length = 463 | Back alignment and structure |
|---|
Score = 740 bits (1914), Expect = 0.0
Identities = 216/468 (46%), Positives = 295/468 (63%), Gaps = 14/468 (2%)
Query: 69 SHYDFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPK 128
S +D+DLF IG GSGGVR+ R AA G VAI E GGTCV+RGCVPK
Sbjct: 2 SAFDYDLFVIGGGSGGVRSGRLAAALGKKVAIAE----------EFRYGGTCVIRGCVPK 51
Query: 129 KLLVYASKFSHEFDESNGFGWKYGTEPQHDWSTLIANKNAELQRLTGIYKNILINAGITL 188
KL VYAS+F+ F+++ GFGW G E + DW+ L+A K E+ RL G+Y+ L NAG +
Sbjct: 52 KLYVYASQFAEHFEDAAGFGWTVG-ESRFDWAKLVAAKEQEIARLEGLYRKGLANAGAEI 110
Query: 189 IEGRGKIVDPHTVDV--DGKLYSARHILISVGGRPFIPD-IPGSEYAIDSDAALDLPSKP 245
++ R ++ P+TV + GK +A I+I+VGG P D +PG E I S+ A DLP+ P
Sbjct: 111 LDTRAELAGPNTVKLLASGKTVTAERIVIAVGGHPSPHDALPGHELCITSNEAFDLPALP 170
Query: 246 EKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRDFVAEQMSLRGIEFHT 305
E I I GGGYIA+EFA IF GL + + R K++L FD+D+R + M +GI
Sbjct: 171 ESILIAGGGYIAVEFANIFHGLGVKTTLIYRGKEILSRFDQDMRRGLHAAMEEKGIRILC 230
Query: 306 EESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNTKNLGLEKVGVKMTKNGAIEV 365
E+ Q++ DG T K VM A GR PNT LGLE GV+ + GAI V
Sbjct: 231 EDIIQSVSADADGRRVATTMKHGEIVADQVMLALGRMPNTNGLGLEAAGVRTNELGAIIV 290
Query: 366 DEYSGTAVPSIWAVGDVTDRINLTPVALMEGGALAKTLFQAEPTKPDYSAVPSAVFSQPP 425
D +S T+ P I+A+GDVTDR+ LTPVA+ E +T ++ PT PD+ + +AVFSQP
Sbjct: 291 DAFSRTSTPGIYALGDVTDRVQLTPVAIHEAMCFIETEYKNNPTSPDHDLIATAVFSQPE 350
Query: 426 IGQVGLSEEQAIQEYGDIDVFTANFRPLKATLSGLPDRIFMKLVLCAKTNKVLGLHMCGE 485
IG VG++EE+A +++ +I+V+ A FRP+KATLSG ++ MKLV+ A KV+G H+ G
Sbjct: 351 IGTVGITEEEAARKFQEIEVYRAEFRPMKATLSGRKEKTIMKLVVNAADRKVVGAHILGH 410
Query: 486 DAPEIVQGFAVAVKAGLTKADFDATVGVHPTAAEEFVTLRTPTRKIRK 533
DA E+ Q ++++AG TK DFD T+ VHPTAAEE VT+ P+ ++R
Sbjct: 411 DAGEMAQLLGISLRAGCTKDDFDRTMAVHPTAAEELVTMYQPSYRVRN 458
|
| >2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A* Length = 463 | Back alignment and structure |
|---|
Score = 735 bits (1900), Expect = 0.0
Identities = 188/471 (39%), Positives = 278/471 (59%), Gaps = 14/471 (2%)
Query: 71 YDFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKL 130
FDL IG GSGG+ + AA FG VA+ E + +GGTCV GCVPKK+
Sbjct: 3 QHFDLIAIGGGSGGLAVAEKAAAFGKRVALIE----------SKALGGTCVNVGCVPKKV 52
Query: 131 LVYASKFSHEFDESNGFGWKYGTEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIE 190
+ YAS + ++ GFG + DW L+A ++ + + + + GIT ++
Sbjct: 53 MWYASHLAEAVRDAPGFGVQAS-GGTLDWPRLVAGRDRYIGAINSFWDGYVERLGITRVD 111
Query: 191 GRGKIVDPHTVDVDGKLYSARHILISVGGRPFIPDIPGSEYAIDSDAALDLPSKPEKIAI 250
G + VD HT++V+G+ SA HI+I+ GGRP +P +PG+E I SD L +P+++AI
Sbjct: 112 GHARFVDAHTIEVEGQRLSADHIVIATGGRPIVPRLPGAELGITSDGFFALQQQPKRVAI 171
Query: 251 VGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRDFVAEQMSLRGIEFHTEESPQ 310
+G GYI +E AG+ SEV V + ++L FD + +AE M +GIE H E +
Sbjct: 172 IGAGYIGIELAGLLRSFGSEVTVVALEDRLLFQFDPLLSATLAENMHAQGIETHLEFAVA 231
Query: 311 AILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNTKNLGLEKVGVKMTKNGAIEVDEYSG 370
A+ + G+ V + ++GF V++A GR PNT++LGLE G+++ NG + D Y
Sbjct: 232 ALERDAQGTTLVAQDGTRLEGFDSVIWAVGRAPNTRDLGLEAAGIEVQSNGMVPTDAYQN 291
Query: 371 TAVPSIWAVGDVTDRINLTPVALMEGGALAKTLFQAEPT-KPDYSAVPSAVFSQPPIGQV 429
T VP ++A+GD+T R LTPVA+ G LA+ LF + K DY +P+ VF+ PP+ +V
Sbjct: 292 TNVPGVYALGDITGRDQLTPVAIAAGRRLAERLFDGQSERKLDYDNIPTVVFAHPPLSKV 351
Query: 430 GLSEEQAIQEYGD-IDVFTANFRPLKATLSGLPDRIFMKLVLCAKTNKVLGLHMCGEDAP 488
GLSE +A + GD + V+ +F P++ L+ + MKLV +V+G+H+ G+ A
Sbjct: 352 GLSEPEARERLGDVLTVYETSFTPMRYALNEHGPKTAMKLVCAGPEQRVVGVHVIGDGAD 411
Query: 489 EIVQGFAVAVKAGLTKADFDATVGVHPTAAEEFVTLRTPTRKIRKSPPSEG 539
E++QGFAVAVK G TKADFD TV +HP +AEE VTL+ P R+ P EG
Sbjct: 412 EMLQGFAVAVKMGATKADFDNTVAIHPGSAEELVTLKEPVRRP-GDPLPEG 461
|
| >1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A* Length = 450 | Back alignment and structure |
|---|
Score = 724 bits (1872), Expect = 0.0
Identities = 185/459 (40%), Positives = 272/459 (59%), Gaps = 15/459 (3%)
Query: 71 YDFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKL 130
+D IG GSGG+ + AA +G A+ E +GGTCV GCVPKK+
Sbjct: 3 KHYDYIAIGGGSGGIASINRAAMYGQKCALIE----------AKELGGTCVNVGCVPKKV 52
Query: 131 LVYASKFSHEF-DESNGFGWKYGTEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLI 189
+ +A++ +G+ + +W TLIA++ A + R+ Y+N+L + +I
Sbjct: 53 MWHAAQIREAIHMYGPDYGFDTT-INKFNWETLIASRTAYIDRIHTSYENVLGKNNVDVI 111
Query: 190 EGRGKIVDPHTVDVDGKLYSARHILISVGGRPFIPDIPGSEYAIDSDAALDLPSKPEKIA 249
+G + VD T++V+G+ +A HILI+ GGRP PDIPG EY IDSD LP+ PE++A
Sbjct: 112 KGFARFVDAKTLEVNGETITADHILIATGGRPSHPDIPGVEYGIDSDGFFALPALPERVA 171
Query: 250 IVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRDFVAEQMSLRGIEFHTEESP 309
+VG GYI +E G+ +GL ++ H+F L FD I + + E M+ G + HT P
Sbjct: 172 VVGAGYIGVELGGVINGLGAKTHLFEMFDAPLPSFDPMISETLVEVMNAEGPQLHTNAIP 231
Query: 310 QAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNTKNLGLEKVGVKMTKNGAIEVDEYS 369
+A++K+TDGSL+++ G + +++A GR P N+ LE GVK + G I VD+Y
Sbjct: 232 KAVVKNTDGSLTLELEDGRSETVDCLIWAIGREPANDNINLEAAGVKTNEKGYIVVDKYQ 291
Query: 370 GTAVPSIWAVGDVTDRINLTPVALMEGGALAKTLFQAEPTKP-DYSAVPSAVFSQPPIGQ 428
T + I+AVGD T + LTPVA+ G L++ LF +P + DYS +P+ VFS PPIG
Sbjct: 292 NTNIEGIYAVGDNTGAVELTPVAVAAGRRLSERLFNNKPDEHLDYSNIPTVVFSHPPIGT 351
Query: 429 VGLSEEQAIQEYGD--IDVFTANFRPLKATLSGLPDRIFMKLVLCAKTNKVLGLHMCGED 486
VGL+E QA ++YGD + V+ ++F + ++ MKLV K++G+H G
Sbjct: 352 VGLTEPQAREQYGDDQVKVYKSSFTAMYTAVTTHRQPCRMKLVCVGSEEKIVGIHGIGFG 411
Query: 487 APEIVQGFAVAVKAGLTKADFDATVGVHPTAAEEFVTLR 525
E++QGFAVA+K G TK DFD TV +HPTAAEEFVT+R
Sbjct: 412 MDEMLQGFAVALKMGATKKDFDNTVAIHPTAAEEFVTMR 450
|
| >3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ... Length = 478 | Back alignment and structure |
|---|
Score = 722 bits (1866), Expect = 0.0
Identities = 184/489 (37%), Positives = 261/489 (53%), Gaps = 30/489 (6%)
Query: 56 AARAKSDNGAELP---SHYDFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSET 112
A R + P + +D IG GSGG+ ++R AA GA A+ E
Sbjct: 1 ACRQEPQPQGPPPAAGAVASYDYLVIGGGSGGLASARRAAELGARAAVVE---------- 50
Query: 113 TGGVGGTCVLRGCVPKKLLVYASKFSHEFDESNGFGWKYGTEPQHDWSTLIANKNAELQR 172
+ +GGTCV GCVPKK++ + S + +G+ E + +W + ++A + R
Sbjct: 51 SHKLGGTCVNVGCVPKKVMWNTAVHSEFMHDHADYGFPSC-EGKFNWRVIKEKRDAYVSR 109
Query: 173 LTGIYKNILINAGITLIEGRGKIVDPH--TVDVDGKLYSARHILISVGGRPFIP---DIP 227
L IY+N L + I +I G T++V GK Y+A HILI+ GG P P IP
Sbjct: 110 LNAIYQNNLTKSHIEIIRGHAAFTSDPKPTIEVSGKKYTAPHILIATGGMPSTPHESQIP 169
Query: 228 GSEYAIDSDAALDLPSKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDED 287
G+ I SD L P + IVG GYIA+E AGI S L S+ + IR KVLR FD
Sbjct: 170 GASLGITSDGFFQLEELPGRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDKVLRSFDSM 229
Query: 288 IRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTN--------KGTVDGFSHVMFAT 339
I E++ G+E + + K+ G + +++A
Sbjct: 230 ISTNCTEELENAGVEVLKFSQVKEVKKTLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAI 289
Query: 340 GRRPNTKNLGLEKVGVKMTKNGAIEVDEYSGTAVPSIWAVGDVTDRINLTPVALMEGGAL 399
GR PNTK+L L K+G++ G I VDE+ T V I+AVGDV + LTPVA+ G L
Sbjct: 290 GRVPNTKDLSLNKLGIQTDDKGHIIVDEFQNTNVKGIYAVGDVCGKALLTPVAIAAGRKL 349
Query: 400 AKTLFQAEPT-KPDYSAVPSAVFSQPPIGQVGLSEEQAIQEYG--DIDVFTANFRPLKAT 456
A LF+ + K DY+ +P+ VFS PPIG VGL+E++AI +YG ++ ++ +F P+
Sbjct: 350 AHRLFEYKEDSKLDYNNIPTVVFSHPPIGTVGLTEDEAIHKYGIENVKTYSTSFTPMYHA 409
Query: 457 LSGLPDRIFMKLVLCAKTNKVLGLHMCGEDAPEIVQGFAVAVKAGLTKADFDATVGVHPT 516
++ + MK+V K KV+G+HM G E++QGFAVAVK G TKADFD TV +HPT
Sbjct: 410 VTKRKTKCVMKMVCANKEEKVVGIHMQGLGCDEMLQGFAVAVKMGATKADFDNTVAIHPT 469
Query: 517 AAEEFVTLR 525
++EE VTLR
Sbjct: 470 SSEELVTLR 478
|
| >3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A* Length = 483 | Back alignment and structure |
|---|
Score = 720 bits (1860), Expect = 0.0
Identities = 177/480 (36%), Positives = 253/480 (52%), Gaps = 17/480 (3%)
Query: 65 AELPSHYDFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRG 124
A + YD+DL IG GS G+ ++ A GA VA + T + T GVGGTCV G
Sbjct: 2 APVQGSYDYDLIVIGGGSAGLACAKEAVLNGARVACLDFVKPTPTLGTKWGVGGTCVNVG 61
Query: 125 CVPKKLLVYASKFSHEFDESNGFGWKYGTEPQHDWSTLIANKNAELQRLTGIYKNILINA 184
C+PKKL+ AS E+ +GW + + DW L+ + ++ + + + L +
Sbjct: 62 CIPKKLMHQASLLGEAVHEAAAYGWNVDDKIKPDWHKLVQSVQNHIKSVNWVTRVDLRDK 121
Query: 185 GITLIEGRGKIVDPHTVDVD----GKLYSARHILISVGGRPFIPDIPG-SEYAIDSDAAL 239
+ I G G VD HT+ + +A+ +I+VGGRP PDIPG EY I SD
Sbjct: 122 KVEYINGLGSFVDSHTLLAKLKSGERTITAQTFVIAVGGRPRYPDIPGAVEYGITSDDLF 181
Query: 240 DLPSKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRDFVAEQMSLR 299
L +P K +VG GYI LE AG GL E V +R VLRGFD+ + + VA M R
Sbjct: 182 SLDREPGKTLVVGAGYIGLECAGFLKGLGYEPTVMVRS-IVLRGFDQQMAELVAASMEER 240
Query: 300 GIEFHTEESPQAILKSTDGSLSV-----KTNKGTVDGFSHVMFATGRRPNTKNLGLEKVG 354
GI F + P ++ K DG L V +T + + D + V++A GR+ +L L G
Sbjct: 241 GIPFLRKTVPLSVEKQDDGKLLVKYKNVETGEESEDVYDTVLWAIGRKGLVDDLNLPNAG 300
Query: 355 VKMTKNGAIEVDEYSGTAVPSIWAVGDVT-DRINLTPVALMEGGALAKTLFQAEPTKPDY 413
V + K I VD T V +I+AVGD+ + LTPVA++ G LA+ L+ + DY
Sbjct: 301 VTVQK-DKIPVDSQEATNVANIYAVGDIIYGKPELTPVAVLAGRLLARRLYGGSTQRMDY 359
Query: 414 SAVPSAVFSQPPIGQVGLSEEQAIQEYG--DIDVFTANFRPLKATLSGLPDRI-FMKLVL 470
V + VF+ VGLSEE A++++G +I+VF ++P + + R ++K V
Sbjct: 360 KDVATTVFTPLEYACVGLSEEDAVKQFGADEIEVFHGYYKPTEFFIPQKSVRYCYLKAVA 419
Query: 471 CAKTN-KVLGLHMCGEDAPEIVQGFAVAVKAGLTKADFDATVGVHPTAAEEFVTLRTPTR 529
+ +V GLH G A E++QGFA A+K+GLT TVG+HPT AEEF L R
Sbjct: 420 ERHGDQRVYGLHYIGPVAGEVIQGFAAALKSGLTINTLINTVGIHPTTAEEFTRLAITKR 479
|
| >2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae} Length = 479 | Back alignment and structure |
|---|
Score = 719 bits (1858), Expect = 0.0
Identities = 170/481 (35%), Positives = 257/481 (53%), Gaps = 29/481 (6%)
Query: 68 PSHYDFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVP 127
+ +D IG GSGGV ++R AA++GA + E +GGTCV GCVP
Sbjct: 7 TNTKHYDYLVIGGGSGGVASARRAASYGAKTLLVE----------AKALGGTCVNVGCVP 56
Query: 128 KKLLVYASKFSHEFDESNGFGWKYG-----TEPQHDWSTLIANKNAELQRLTGIYKNILI 182
KK++ YAS + +N +G +W ++A + RL GIY+ L
Sbjct: 57 KKVMWYASDLATRVSHANEYGLYQNLPLDKEHLTFNWPEFKQKRDAYVHRLNGIYQKNLE 116
Query: 183 NAGITLIEGRGKIVDPHTVDVDGK-----LYSARHILISVGGRPFIPD-IPGSEYAIDSD 236
+ ++ G + V+V + +YSA HIL++ GG+ P+ IPG E DSD
Sbjct: 117 KEKVDVVFGWARFNKDGNVEVQKRDNTTEVYSANHILVATGGKAIFPENIPGFELGTDSD 176
Query: 237 AALDLPSKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRDFVAEQM 296
L +P+K+ +VG GYI +E AG+F GL SE H+ IR + VLR FDE I++ + +
Sbjct: 177 GFFRLEEQPKKVVVVGAGYIGIELAGVFHGLGSETHLVIRGETVLRKFDECIQNTITDHY 236
Query: 297 SLRGIEFHTEESPQAILKSTD-GSLSVKTNKG-TVDGFSHVMFATGRRPNTKNLGLEKVG 354
GI H + K+ + L + N ++D +++ GR+ + +G E VG
Sbjct: 237 VKEGINVHKLSKIVKVEKNVETDKLKIHMNDSKSIDDVDELIWTIGRKSHL-GMGSENVG 295
Query: 355 VKMTKNGAIEVDEYSGTAVPSIWAVGDVTDRINLTPVALMEGGALAKTLF---QAEPTKP 411
+K+ + I DEY T VP+I+++GDV ++ LTPVA+ G L+ LF + K
Sbjct: 296 IKLNSHDQIIADEYQNTNVPNIYSLGDVVGKVELTPVAIAAGRKLSNRLFGPEKFRNDKL 355
Query: 412 DYSAVPSAVFSQPPIGQVGLSEEQAIQEYG--DIDVFTANFRPLKATLSGLPDRIFMKLV 469
DY VPS +FS P G +G+SE++AI++YG +I V+ + F + + K+V
Sbjct: 356 DYENVPSVIFSHPEAGSIGISEKEAIEKYGKENIKVYNSKFTAMYYAMLSEKSPTRYKIV 415
Query: 470 LCAKTNKVLGLHMCGEDAPEIVQGFAVAVKAGLTKADFDATVGVHPTAAEEFVTLRTPTR 529
KV+GLH+ G+ + EI+QGF VA+K G TKADFD V +HPT+AEE VT+R
Sbjct: 416 CAGPNEKVVGLHIVGDSSAEILQGFGVAIKMGATKADFDNCVAIHPTSAEELVTMRGSHH 475
Query: 530 K 530
Sbjct: 476 H 476
|
| >3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A* Length = 519 | Back alignment and structure |
|---|
Score = 715 bits (1847), Expect = 0.0
Identities = 182/503 (36%), Positives = 264/503 (52%), Gaps = 23/503 (4%)
Query: 48 FQCRRRHVAARAKSDNGAE-LPSHYDFDLFTIGAGSGGVRASRFAANFGASVAICELPFS 106
+ R NG E LP YD+DL IG GSGG+ A++ AA +G V + +
Sbjct: 7 HHHHSSGLVPRGSHMNGPEDLPKSYDYDLIIIGGGSGGLAAAKEAAQYGKKVMVLDFVTP 66
Query: 107 TISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDESNGFGWKYGTEPQHDWSTLIANK 166
T T G+GGTCV GC+PKKL+ A+ +S +GWK +HDW +I
Sbjct: 67 T-PLGTRWGLGGTCVNVGCIPKKLMHQAALLGQALQDSRNYGWKVEETVKHDWDRMIEAV 125
Query: 167 NAELQRLTGIYKNILINAGITLIEGRGKIVDPHTVDVDGK-----LYSARHILISVGGRP 221
+ L Y+ L + G+ + PH + +YSA LI+ G RP
Sbjct: 126 QNHIGSLNWGYRVALREKKVVYENAYGQFIGPHRIKATNNKGKEKIYSAERFLIATGERP 185
Query: 222 FIPDIPG-SEYAIDSDAALDLPSKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKV 280
IPG EY I SD LP P K +VG Y+ALE AG +G+ +V V +R +
Sbjct: 186 RYLGIPGDKEYCISSDDLFSLPYCPGKTLVVGASYVALECAGFLAGIGLDVTVMVR-SIL 244
Query: 281 LRGFDEDIRDFVAEQMSLRGIEFHTEESPQAILKS---TDGSLSV-----KTNKGTVDGF 332
LRGFD+D+ + + E M GI+F + P + + T G L V + + +
Sbjct: 245 LRGFDQDMANKIGEHMEEHGIKFIRQFVPIKVEQIEAGTPGRLRVVAQSTNSEEIIEGEY 304
Query: 333 SHVMFATGRRPNTKNLGLEKVGVKMT-KNGAIEVDEYSGTAVPSIWAVGDV-TDRINLTP 390
+ VM A GR T+ +GLE VGVK+ K G I V + T VP I+A+GD+ D++ LTP
Sbjct: 305 NTVMLAIGRDACTRKIGLETVGVKINEKTGKIPVTDEEQTNVPYIYAIGDILEDKVELTP 364
Query: 391 VALMEGGALAKTLFQAEPTKPDYSAVPSAVFSQPPIGQVGLSEEQAIQEYGD--IDVFTA 448
VA+ G LA+ L+ K DY VP+ VF+ G GLSEE+A++++G+ I+V+ +
Sbjct: 365 VAIQAGRLLAQRLYAGSTVKCDYENVPTTVFTPLEYGACGLSEEKAVEKFGEENIEVYHS 424
Query: 449 NFRPLKATLSGLPD-RIFMKLVLCAK-TNKVLGLHMCGEDAPEIVQGFAVAVKAGLTKAD 506
F PL+ T+ + + + K++ K +V+G H+ G +A E+ QGFA A+K GLTK
Sbjct: 425 YFWPLEWTIPSRDNNKCYAKIICNTKDNERVVGFHVLGPNAGEVTQGFAAALKCGLTKKQ 484
Query: 507 FDATVGVHPTAAEEFVTLRTPTR 529
D+T+G+HP AE F TL R
Sbjct: 485 LDSTIGIHPVCAEVFTTLSVTKR 507
|
| >3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A* Length = 488 | Back alignment and structure |
|---|
Score = 705 bits (1821), Expect = 0.0
Identities = 175/490 (35%), Positives = 248/490 (50%), Gaps = 21/490 (4%)
Query: 68 PSHYDFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVP 127
FDL IG GSGG+ ++ AA G VA+ + + T G+GGTCV GC+P
Sbjct: 2 GGQQSFDLLVIGGGSGGLACAKEAAQLGKKVAVADYVEPS-PRGTKWGLGGTCVNVGCIP 60
Query: 128 KKLLVYASKFSHEFDESNGFGWKYGTEPQHDWSTLIANKNAELQRLTGIYKNILINAGIT 187
KKL+ A+ +++ +GW+ QH+W T+ ++ L ++ L + +
Sbjct: 61 KKLMHQAALLGGMIRDAHHYGWEVAQPVQHNWKTMAEAVQNHVKSLNWGHRVQLQDRKVK 120
Query: 188 LIEGRGKIVDPHTVDV-----DGKLYSARHILISVGGRPFIP-DIPGS-EYAIDSDAALD 240
+ VD HTV L SA HI+I+ GGRP P + G+ EY I SD
Sbjct: 121 YFNIKASFVDEHTVRGVDKGGKATLLSAEHIVIATGGRPRYPTQVKGALEYGITSDDIFW 180
Query: 241 LPSKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRDFVAEQMSLRG 300
L P K +VG Y+ALE AG +G+ + V +R LRGFD+ + V E M G
Sbjct: 181 LKESPGKTLVVGASYVALECAGFLTGIGLDTTVMMRS-IPLRGFDQQMSSLVTEHMESHG 239
Query: 301 IEFHTEESPQAILKSTDGSLSVK-----TNKGTVDGFSHVMFATGRRPNTKNLGLEKVGV 355
+F P I K L V + K F V++A GR P T+ L LEK G+
Sbjct: 240 TQFLKGCVPSHIKKLPTNQLQVTWEDHASGKEDTGTFDTVLWAIGRVPETRTLNLEKAGI 299
Query: 356 KMT-KNGAIEVDEYSGTAVPSIWAVGDVTD-RINLTPVALMEGGALAKTLFQAEPTKPDY 413
KN I VD T+VP I+A+GDV + R LTP A+ G LA+ LF T DY
Sbjct: 300 STNPKNQKIIVDAQEATSVPHIYAIGDVAEGRPELTPTAIKAGKLLAQRLFGKSSTLMDY 359
Query: 414 SAVPSAVFSQPPIGQVGLSEEQAIQEYGD--IDVFTANFRPLKATLSGL-PDRIFMKLVL 470
S VP+ VF+ G VGLSEE+A+ +G ++V+ A ++PL+ T++ + ++K+V
Sbjct: 360 SNVPTTVFTPLEYGCVGLSEEEAVALHGQEHVEVYHAYYKPLEFTVADRDASQCYIKMVC 419
Query: 471 CAKTN-KVLGLHMCGEDAPEIVQGFAVAVKAGLTKADFDATVGVHPTAAEEFVTLRTPTR 529
+ VLGLH G +A E+ QGFA+ +K G + A TVG+HPT +EE V L R
Sbjct: 420 MREPPQLVLGLHFLGPNAGEVTQGFALGIKCGASYAQVMQTVGIHPTCSEEVVKLHISKR 479
Query: 530 KIRKSPPSEG 539
P G
Sbjct: 480 SG-LEPTVTG 488
|
| >2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A* Length = 598 | Back alignment and structure |
|---|
Score = 696 bits (1798), Expect = 0.0
Identities = 191/514 (37%), Positives = 274/514 (53%), Gaps = 27/514 (5%)
Query: 50 CRRRHVAARAKSDNGAELPSHYDFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTIS 109
+ G S YD+DL IG GSGG+ A + AA +GA A+ + T
Sbjct: 85 SQTVLKYYSNDELAGIVNESKYDYDLIVIGGGSGGLAAGKEAAKYGAKTAVLDYVEPT-P 143
Query: 110 SETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDESNGFGWKYG-TEPQHDWSTLIANKNA 168
TT G+GGTCV GC+PKKL+ A SH +++ FGW ++ H+WST++ +
Sbjct: 144 IGTTWGLGGTCVNVGCIPKKLMHQAGLLSHALEDAEHFGWSLDRSKISHNWSTMVEGVQS 203
Query: 169 ELQRLTGIYKNILINAGITLIEGRGKIVDPHTVDVDGK-----LYSARHILISVGGRPFI 223
+ L YK L + +T + +G+++ PH V + K + I+++ G RP
Sbjct: 204 HIGSLNWGYKVALRDNQVTYLNAKGRLISPHEVQITDKNQKVSTITGNKIILATGERPKY 263
Query: 224 PDIPG-SEYAIDSDAALDLPSKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLR 282
P+IPG EY I SD LP P K ++G Y+ALE AG + L +V V +R +LR
Sbjct: 264 PEIPGAVEYGITSDDLFSLPYFPGKTLVIGASYVALECAGFLASLGGDVTVMVR-SILLR 322
Query: 283 GFDEDIRDFVAEQMSLRGIEFHTEESPQAIL--------KSTDGSLSVKTN----KGTVD 330
GFD+ + + V + M G++F P I + G L VK + K +
Sbjct: 323 GFDQQMAEKVGDYMENHGVKFAKLCVPDEIKQLKVVDTENNKPGLLLVKGHYTDGKKFEE 382
Query: 331 GFSHVMFATGRRPNTKNLGLEKVGVKMTKNGAIEVDEYSGTAVPSIWAVGDVT-DRINLT 389
F V+FA GR P + E VGVK+ KNG + + T V +++A+GD+ + LT
Sbjct: 383 EFETVIFAVGREPQLSKVLCETVGVKLDKNGRVVCTDDEQTTVSNVYAIGDINAGKPQLT 442
Query: 390 PVALMEGGALAKTLFQAEPTKPDYSAVPSAVFSQPPIGQVGLSEEQAIQEYG--DIDVFT 447
PVA+ G LA+ LF DYS V + VF+ G GLSEE AI++YG DI+V+
Sbjct: 443 PVAIQAGRYLARRLFAGATELTDYSNVATTVFTPLEYGACGLSEEDAIEKYGDKDIEVYH 502
Query: 448 ANFRPLKATLSGLPDR-IFMKLVLCAKTN-KVLGLHMCGEDAPEIVQGFAVAVKAGLTKA 505
+NF+PL+ T++ D +MKLV N +VLGLH+ G +A EI QG+AVA+K G TKA
Sbjct: 503 SNFKPLEWTVAHREDNVCYMKLVCRKSDNMRVLGLHVLGPNAGEITQGYAVAIKMGATKA 562
Query: 506 DFDATVGVHPTAAEEFVTLRTPTRKIRKSPPSEG 539
DFD T+G+HPT +E F TL + SP G
Sbjct: 563 DFDRTIGIHPTCSETFTTLHVTKKS-GVSPIVSG 595
|
| >1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 Length = 500 | Back alignment and structure |
|---|
Score = 660 bits (1704), Expect = 0.0
Identities = 174/513 (33%), Positives = 261/513 (50%), Gaps = 69/513 (13%)
Query: 72 DFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLL 131
+DL IG GSGG+ A+R AA A VA+ E +GGTCV GCVPKK++
Sbjct: 2 VYDLIVIGGGSGGMAAARRAARHNAKVALVE----------KSRLGGTCVNVGCVPKKIM 51
Query: 132 VYASKFSHEFDESNGFGWKYGTEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIEG 191
A+ + S +G+ T+ + L+ ++ +QRL IY+ L + L EG
Sbjct: 52 FNAASVHDILENSRHYGFD--TKFSFNLPLLVERRDKYIQRLNNIYRQNLSKDKVDLYEG 109
Query: 192 RGKIVDPHTVDVDG--------------KLYSARHILISVGGRPFIPDIPGSEYAIDSDA 237
+ + + + G ++ R+ILI+VG +P P + G E I SD
Sbjct: 110 TASFLSENRILIKGTKDNNNKDNGPLNEEILEGRNILIAVGNKPVFPPVKGIENTISSDE 169
Query: 238 ALDLPSKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRDFVAEQMS 297
++ + +KI IVG GYIA+E + L + ++F R ++LR FDE + + + M
Sbjct: 170 FFNIK-ESKKIGIVGSGYIAVELINVIKRLGIDSYIFARGNRILRKFDESVINVLENDMK 228
Query: 298 LRGIEFHTEESPQAILKSTDGSLSVK-TNKGTVDGFSHVMFATGRRPNTKNLGLEKVGVK 356
I T I K +D +LS+ ++ + F HV++ GR P+T+NL LEK+ V+
Sbjct: 229 KNNINIVTFADVVEIKKVSDKNLSIHLSDGRIYEHFDHVIYCVGRSPDTENLKLEKLNVE 288
Query: 357 MTKNGAIEVDEYSGTAVPSIWAVGD----------------------------------V 382
T N I VDE T+V +I+AVGD +
Sbjct: 289 -TNNNYIVVDENQRTSVNNIYAVGDCCMVKKSKEIEDLNLLKLYNEERYLNKKENVTEDI 347
Query: 383 TDRINLTPVALMEGGALAKTLFQAEPTKPDYSAVPSAVFSQPPIGQVGLSEEQAIQEYG- 441
+ LTPVA+ G LA LF + K +Y +P+ +FS PPIG +GLSEE AIQ YG
Sbjct: 348 FYNVQLTPVAINAGRLLADRLFLKKTRKTNYKLIPTVIFSHPPIGTIGLSEEAAIQIYGK 407
Query: 442 -DIDVFTANFRPLKATLSG----LPDRIFMKLVLCAKTNKVLGLHMCGEDAPEIVQGFAV 496
++ ++ + F L ++ L ++ ++KLV K + GLH+ G +A EIVQGFAV
Sbjct: 408 ENVKIYESKFTNLFFSVYDIEPELKEKTYLKLVCVGKDELIKGLHIIGLNADEIVQGFAV 467
Query: 497 AVKAGLTKADFDATVGVHPTAAEEFVTLRTPTR 529
A+K TK DFD T+ +HPTAAEEF+TL+ +
Sbjct: 468 ALKMNATKKDFDETIPIHPTAAEEFLTLQPWMK 500
|
| >1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A* Length = 523 | Back alignment and structure |
|---|
Score = 463 bits (1193), Expect = e-159
Identities = 105/490 (21%), Positives = 193/490 (39%), Gaps = 40/490 (8%)
Query: 71 YDFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKL 130
++D IG G+ G S + G I + +GG+C CVP L
Sbjct: 42 REYDAIFIGGGAAGRFGSAYLRAMGGRQLIVD------RWPF---LGGSCPHNACVPHHL 92
Query: 131 LVYASKFSHEFDESNGFGW-KYGTEPQHDWSTLIANKNAELQRLTGI--YKNILINAGIT 187
+ +G W TE ++ A GI +++
Sbjct: 93 FSDCAAELMLARTFSGQYWFPDMTEKVVGIKEVVDLFRAGRNGPHGIMNFQSKEQLNLEY 152
Query: 188 LIEGRGKIVDPHTVDVDGKLYSARHILISVGGRPFIPDIPGSEYAI---DSDAALDLPSK 244
++ K++D HTV+ GK++ A++++++VG P D+PG + +L +
Sbjct: 153 ILNCPAKVIDNHTVEAAGKVFKAKNLILAVGAGPGTLDVPGVNAKGVFDHATLVEELDYE 212
Query: 245 PEK-IAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRDFVAEQMSLRGIEF 303
P + +VGG A+E+ F+ + +R + + D + R +V ++M +G+E
Sbjct: 213 PGSTVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEPLKLIKDNETRAYVLDRMKEQGMEI 272
Query: 304 HTEESPQAILKSTDGSLSV----KTNKGTVDGFSHVMFATGRRPNTKNLGLEKVGVKMTK 359
+ + I + +G + N V G +P + L + +G+ +
Sbjct: 273 ISGSNVTRIEEDANGRVQAVVAMTPNGEMRIETDFVFLGLGEQPRSAELA-KILGLDLGP 331
Query: 360 NGAIEVDEYSGTAVPSIWAVGDVTDRINLTPVALMEGGALAKTLFQAEPTKPDYSAVPSA 419
G + V+EY T+VP+++AVGD+ A G A+ + E P
Sbjct: 332 KGEVLVNEYLQTSVPNVYAVGDLIGGPMEMFKARKSGCYAARNVM-GEKISYTPKNYPDF 390
Query: 420 VFSQPPIGQVGLSEEQAIQEYGDIDV--------------FTANFRPLKATLSGLPDRI- 464
+ + + +G+ EE+A +I A+ R + +
Sbjct: 391 LHTHYEVSFLGMGEEEARAAGHEIVTIKMPPDTENGLNVALPASDRTMLYAFGKGTAHMS 450
Query: 465 -FMKLVLCAKTNKVLGLHMCGEDAPEIVQGFAVAVKAGLTKADFDAT--VGVHPTAAEEF 521
F K+V+ AKT KVLG H G A + Q V +K GLT + + ++PT +
Sbjct: 451 GFQKIVIDAKTRKVLGAHHVGYGAKDAFQYLNVLIKQGLTVDELGDMDELFLNPTHFIQL 510
Query: 522 VTLRTPTRKI 531
LR ++ +
Sbjct: 511 SRLRAGSKNL 520
|
| >1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A* Length = 467 | Back alignment and structure |
|---|
Score = 335 bits (862), Expect = e-110
Identities = 130/457 (28%), Positives = 213/457 (46%), Gaps = 23/457 (5%)
Query: 72 DFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLL 131
+ IG+G + A+ A GA V + E G +GGTCV GCVP K++
Sbjct: 4 PVQVAVIGSGGAAMAAALKAVEQGAQVTLIE----------RGTIGGTCVNVGCVPSKIM 53
Query: 132 VYASKFSHEFDESNGFGWKYGTEPQHDWSTLIANKNAELQRLT-GIYKNILI-NAGITLI 189
+ A+ +H ES G T P D S L+A + A + L Y+ IL N IT++
Sbjct: 54 IRAAHIAHLRRESPFDGGIAATVPTIDRSKLLAQQQARVDELRHAKYEGILGGNPAITVV 113
Query: 190 EGRGKIVDPHTVDVDG-----KLYSARHILISVGGRPFIPDIPGSEYA--IDSDAALDLP 242
G + D ++ V ++ L++ G P +P IPG + + S AL
Sbjct: 114 HGEARFKDDQSLTVRLNEGGERVVMFDRCLVATGASPAVPPIPGLKESPYWTSTEALASD 173
Query: 243 SKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRDFVAEQMSLRGIE 302
+ PE++A++G +ALE A F+ L S+V V + + + D I + V GIE
Sbjct: 174 TIPERLAVIGSSVVALELAQAFARLGSKVTV-LARNTLFFREDPAIGEAVTAAFRAEGIE 232
Query: 303 FHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNTKNLGLEKVGVKMTKNGA 362
+ DG + T G + ++ ATGR PNT++L L+ GV + GA
Sbjct: 233 VLEHTQASQV-AHMDGEFVLTTTHGELR-ADKLLVATGRTPNTRSLALDAAGVTVNAQGA 290
Query: 363 IEVDEYSGTAVPSIWAVGDVTDRINLTPVALMEGGALAKTLFQAEPTKPDYSAVPSAVFS 422
I +D+ T+ P+I+A GD TD+ VA G A + D +A+P+ VF+
Sbjct: 291 IVIDQGMRTSNPNIYAAGDCTDQPQFVYVAAAAGTRAAINMT-GGDAALDLTAMPAVVFT 349
Query: 423 QPPIGQVGLSEEQAIQEYGDIDVFTANFRPLKATLSGLPDRIFMKLVLCAKTNKVLGLHM 482
P + VG SE +A + + D T + L+ R F+KLV+ +++++G+
Sbjct: 350 DPQVATVGYSEAEAHHDGIETDSRTLTLDNVPRALANFDTRGFIKLVIEEGSHRLIGVQA 409
Query: 483 CGEDAPEIVQGFAVAVKAGLTKADFDATVGVHPTAAE 519
+A E++Q A+A++ +T + + + T E
Sbjct: 410 VAPEAGELIQTAALAIRNRMTVQELADQLFPYLTMVE 446
|
| >1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1 Length = 499 | Back alignment and structure |
|---|
Score = 306 bits (785), Expect = 3e-98
Identities = 107/474 (22%), Positives = 178/474 (37%), Gaps = 48/474 (10%)
Query: 73 FDLFTIGAGSGG----VRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPK 128
+ +G G G + A+ V + + G+GG VL CVP
Sbjct: 3 TRIVILGGGPAGYEAALVAATSHPE-TTQVTVID----------CDGIGGAAVLDDCVPS 51
Query: 129 KLLVYASKFSHEFDESNGFGWKYGT-EPQHDWSTLIANKNAELQRLT-GIY----KNILI 182
K + ++ E + G+ + + + A + I
Sbjct: 52 KTFIASTGLRTELRRAPHLGFHIDFDDAKISLPQIHARVKTLAAAQSADITAQLLSM--- 108
Query: 183 NAGITLIEGRGKIVDP------HTVDV---DGK--LYSARHILISVGGRPF-IPDIP-GS 229
G+ +I GRG+++D H + DG + A +L++ G P +P
Sbjct: 109 --GVQVIAGRGELIDSTPGLARHRIKATAADGSTSEHEADVVLVATGASPRILPSAQPDG 166
Query: 230 EYAIDSDAALDLPSKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIR 289
E + DL + P+ + +VG G EF ++ L V V Q VL D D
Sbjct: 167 ERILTWRQLYDLDALPDHLIVVGSGVTGAEFVDAYTELGVPVTVVASQDHVLPYEDADAA 226
Query: 290 DFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNTKNLG 349
+ E + RG+ ++ T + V G SH + G PNT LG
Sbjct: 227 LVLEESFAERGVRLFKNARAASV-TRTGAGVLVTMTDGRTVEGSHALMTIGSVPNTSGLG 285
Query: 350 LEKVGVKMTKNGAIEVDEYSGTAVPSIWAVGDVTDRINLTPVALMEGGALAKTLFQAEPT 409
LE+VG+++ + + VD S T I+A GD T + L VA M+G +
Sbjct: 286 LERVGIQLGRGNYLTVDRVSRTLATGIYAAGDCTGLLPLASVAAMQGRIAMYHALGEGVS 345
Query: 410 KPDYSAVPSAVFSQPPIGQVGLSEEQAIQEYGDIDV----FTANFRPLKATLSGLPDRIF 465
V + VF++P I VG+ + N R A +S + F
Sbjct: 346 PIRLRTVAATVFTRPEIAAVGVPQSVIDAGSVAARTIMLPLRTNAR---AKMSEMRHG-F 401
Query: 466 MKLVLCAKTNKVLGLHMCGEDAPEIVQGFAVAVKAGLTKADFDATVGVHPTAAE 519
+K+ T V+G + A E++ AVAV+ +T + T+ V+P+ +
Sbjct: 402 VKIFCRRSTGVVIGGVVVAPIASELILPIAVAVQNRITVNELAQTLAVYPSLSG 455
|
| >2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A* Length = 464 | Back alignment and structure |
|---|
Score = 291 bits (747), Expect = 5e-93
Identities = 136/468 (29%), Positives = 206/468 (44%), Gaps = 42/468 (8%)
Query: 72 DFDLFTIGAGSGG-VRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKL 130
+D+ +GAG GG V A R AA G S AI E GG C+ GC+P K
Sbjct: 3 HYDVVVLGAGPGGYVAAIR-AAQLGLSTAIVE----------PKYWGGVCLNVGCIPSKA 51
Query: 131 LVYASKFSHEF-DESNGFGWKYGTEPQHDWSTLIANKNAELQRLT-GIY----KNILINA 184
L+ ++ H F ++ FG E D+ + G++ KN
Sbjct: 52 LLRNAELVHIFTKDAKAFGIS--GEVTFDYGIAYDRSRKVAEGRVAGVHFLMKKN----- 104
Query: 185 GITLIEGRGKIVDPHTVDVDGK-----LYSARHILISVGGRP-FIPDIPGSEYAIDSDAA 238
IT I G G D +T+ VD + + +I+ G +P S + +
Sbjct: 105 KITEIHGYGTFADANTLLVDLNDGGTESVTFDNAIIATGSSTRLVPGTSLSANVVTYEEQ 164
Query: 239 LDLPSKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRDFVAEQMSL 298
+ P+ I I G G I +EF + +V + + L D D+ + +Q
Sbjct: 165 ILSRELPKSIIIAGAGAIGMEFGYVLKNYGVDVTIVEFLPRALPNEDADVSKEIEKQFKK 224
Query: 299 RGIEFHTEESPQAILKSTDG-SLSVKTNKGTVD-GFSHVMFATGRRPNTKNLGLEKVGVK 356
G+ T ++I +++V + + V+ A G PN + GL+K GV
Sbjct: 225 LGVTILTATKVESIADGGSQVTVTVTKDGVAQELKAEKVLQAIGFAPNVEGYGLDKAGVA 284
Query: 357 MTKNGAIEVDEYSGTAVPSIWAVGDVTDRINLTPVALMEGGALAKTLFQAEP-TKPDYSA 415
+T AI VD+Y T V I+A+GDV + L VA +G A+T+ AE T D+
Sbjct: 285 LTDRKAIGVDDYMRTNVGHIYAIGDVNGLLQLAHVAEAQGVVAAETIAGAETLTLGDHRM 344
Query: 416 VPSAVFSQPPIGQVGLSEEQAIQEYGDIDV----FTANFRPLKATLSGLPDRIFMKLVLC 471
+P A F QP + GL+E+QA E D+ V FTAN + A G P F+KLV
Sbjct: 345 LPRATFCQPNVASFGLTEQQARNEGYDVVVAKFPFTANAK---AHGVGDPSG-FVKLVAD 400
Query: 472 AKTNKVLGLHMCGEDAPEIVQGFAVAVKAGLTKADFDATVGVHPTAAE 519
AK ++LG H+ G D E++ +A + LT ++ V HPT +E
Sbjct: 401 AKHGELLGGHLVGHDVAELLPELTLAQRWDLTASELARNVHTHPTMSE 448
|
| >3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea} Length = 492 | Back alignment and structure |
|---|
Score = 291 bits (746), Expect = 1e-92
Identities = 112/474 (23%), Positives = 179/474 (37%), Gaps = 44/474 (9%)
Query: 69 SHYDFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPK 128
+ D+ IG G+ G+ A R A V + E G G TC GC+P
Sbjct: 5 KVINVDVAIIGTGTAGMGAYRAAKKHTDKVVLIE----------GGAYGTTCARVGCMPS 54
Query: 129 KLLVYASKFSHEFDESNGFGWKYGTEPQHDWSTLIANKNAELQRLT-GIYKNILINAGIT 187
KLL+ A+ S+ +++ FG + + ++ E R + +++
Sbjct: 55 KLLIAAADASYHASQTDLFGIQVD-RISVNGKAVMKRIQTERDRFVGFVVESVESFDEQD 113
Query: 188 LIEGRGKIVDPHTVDVDGK-LYSARHILISVGGRPFIPDIPGSEYA----IDSDAALDLP 242
I G K +D HT+ VD A+ I+I+ G RP A + +D +L
Sbjct: 114 KIRGFAKFLDEHTLQVDDHSQVIAKRIVIATGSRPNY--PEFLAAAGSRLLTNDNLFELN 171
Query: 243 SKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRDFVAEQMSLRGIE 302
P+ +A+ G G I LE S L V VF R V DE+++ + + +
Sbjct: 172 DLPKSVAVFGPGVIGLELGQALSRLGVIVKVFGRSGSVANLQDEEMKRYAEKTFN-EEFY 230
Query: 303 FHTEESPQAILKSTDGSLSVKTNKGTVDG------FSHVMFATGRRPNTKNLGLEKVGVK 356
F + + ++ D V+ G F +V+ ATGR+ N LGLE ++
Sbjct: 231 FDAKARVISTIEKEDA---VEVIYFDKSGQKTTESFQYVLAATGRKANVDKLGLENTSIE 287
Query: 357 MTKNGAIEVDEYSG-TAVPSIWAVGDVTDRINLTPVALMEGGALAKTLFQAEPTKP-DYS 414
+ K + DE + T+V I+ GD + + L A +G
Sbjct: 288 LDKKNSPLFDELTLQTSVDHIFVAGDANNTLTLLHEAADDGKVAGTNAGAYPVIAQGQRR 347
Query: 415 AVPSAVFSQPPIGQVGLSEEQAIQEYGD---IDV------FTANFRPLKATLSGLPDRIF 465
A S VF++P + VGLS Q Y D + F R + + G
Sbjct: 348 APLSVVFTEPQVASVGLSLRQIEDLYADQDAANYVVGQVSFEGQGR---SRVMGKNKG-L 403
Query: 466 MKLVLCAKTNKVLGLHMCGEDAPEIVQGFAVAVKAGLTKADFDATVGVHPTAAE 519
+ + + + LG M G A I A A + +T HP E
Sbjct: 404 LNVYADRTSGEFLGAEMFGPAAEHIGHLLAWARQQQMTVQAMLTMPFYHPVIEE 457
|
| >2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A* Length = 455 | Back alignment and structure |
|---|
Score = 280 bits (720), Expect = 4e-89
Identities = 135/463 (29%), Positives = 205/463 (44%), Gaps = 41/463 (8%)
Query: 73 FDLFTIGAGSGG-VRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLL 131
+DL IGAG GG V A R AA G V + E +GGTC+ GC+P K L
Sbjct: 2 YDLLVIGAGPGGYVAAIR-AAQLGMKVGVVE---------KEKALGGTCLRVGCIPSKAL 51
Query: 132 VYASKFSHEFDESNG--FGWKYGTEPQHDWSTLIANKNAELQRLT-GIY----KNILINA 184
+ + E+ G K + D L+A+K+ +Q T G+ KN
Sbjct: 52 LETT---ERIYEAKKGLLGAKVK-GVELDLPALMAHKDKVVQANTQGVEFLFKKN----- 102
Query: 185 GITLIEGRGKIVDPHTVDVDGK--LYSARHILISVGGRPF-IPDIPGSEYAI-DSDAALD 240
GI +G + + V V+ AR+ILI+ G P P + S AL
Sbjct: 103 GIARHQGTARFLSERKVLVEETGEELEARYILIATGSAPLIPPWAQVDYERVVTSTEALS 162
Query: 241 LPSKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRDFVAEQMSLRG 300
P P+++ +VGGG I LE ++ L +EV V ++L D ++ +G
Sbjct: 163 FPEVPKRLIVVGGGVIGLELGVVWHRLGAEVIVLEYMDRILPTMDLEVSRAAERVFKKQG 222
Query: 301 IEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNTKNLGLEKVGVKMTKN 360
+ T A+ V+ G V V+ A GRRP T+ L LE G+ +
Sbjct: 223 LTIRTGVRVTAV-VPEAKGARVELEGGEVLEADRVLVAVGRRPYTEGLSLENAGLSTDER 281
Query: 361 GAIEVDEYSGTAVPSIWAVGDVTDRINLTPVALMEGGALAKTLFQAEPTKPDYSAVPSAV 420
G I VDE+ T VP I+A+GDV L A EG A + + DY A+PS V
Sbjct: 282 GRIPVDEHLRTRVPHIYAIGDVVRGPMLAHKASEEGIAAVEHM-VRGFGHVDYQAIPSVV 340
Query: 421 FSQPPIGQVGLSEEQAIQEYGDIDV----FTANFRPLKATLSGLPDRIFMKLVLCAKTNK 476
++ P I VG +EE+ + V ++A+ R A G + F+K++ AKT++
Sbjct: 341 YTHPEIAAVGYTEEELKAQGIPYKVGKFPYSASGR---ARAMGETEG-FIKVLAHAKTDR 396
Query: 477 VLGLHMCGEDAPEIVQGFAVAVKAGLTKADFDATVGVHPTAAE 519
+LG+H G +++ A+A+ + D HP+ +E
Sbjct: 397 ILGVHGIGARVGDVLAEAALALFFKASAEDLGRAPHAHPSLSE 439
|
| >1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 Length = 470 | Back alignment and structure |
|---|
Score = 274 bits (702), Expect = 3e-86
Identities = 132/473 (27%), Positives = 222/473 (46%), Gaps = 49/473 (10%)
Query: 72 DFDLFTIGAGSGG-VRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKL 130
+ D+ IG G GG V A + AA G E G +GGTC+ GC+P K
Sbjct: 6 ENDVVIIGGGPGGYVAAIK-AAQLGFKTTCIE---------KRGALGGTCLNVGCIPSKA 55
Query: 131 LVYASKFSHEFDESNGFGWKYG---TEPQHDWSTLIANKNAELQRLT-GIY----KNILI 182
L+++S H + E+ +G + + D + ++ K+ + LT GI KN
Sbjct: 56 LLHSS---HMYHEAKHSFANHGVKVSNVEIDLAAMMGQKDKAVSNLTRGIEGLFKKN--- 109
Query: 183 NAGITLIEGRGKIVDPHTVDV---DGK--LYSARHILISVGGRPF-IPDIP-GSEYAIDS 235
+T ++G GK V P + V +G+ + +HI+I+ G +P + + + S
Sbjct: 110 --KVTYVKGYGKFVSPSEISVDTIEGENTVVKGKHIIIATGSDVKSLPGVTIDEKKIVSS 167
Query: 236 DAALDLPSKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRDFVAEQ 295
AL L P+K+ ++G GYI LE ++ + SEV V +++ D +IR
Sbjct: 168 TGALALSEIPKKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASEIVPTMDAEIRKQFQRS 227
Query: 296 MSLRGIEFHTEESPQAILKSTDG-SLSVKTNKG----TVDGFSHVMFATGRRPNTKNLGL 350
+ +G++F + + S DG L+V+ + G ++ V+ + GR P T L L
Sbjct: 228 LEKQGMKFKLKTKVVGVDTSGDGVKLTVEPSAGGEQTIIE-ADVVLVSAGRTPFTSGLNL 286
Query: 351 EKVGVKMTKNGAIEVDEYSGTAVPSIWAVGDVTDRINLTPVALMEGGALAKTLFQAEPTK 410
+K+GV+ K G I V+E T V ++A+GDV L A +G A + L +
Sbjct: 287 DKIGVETDKLGRILVNERFSTNVSGVYAIGDVIPGPMLAHKAEEDGVACVEYL-AGKVGH 345
Query: 411 PDYSAVPSAVFSQPPIGQVGLSEEQAIQEYGDIDV----FTANFRPLKATLSGLPDRIFM 466
DY VP V++ P + VG +EEQ + + V F AN R A + +
Sbjct: 346 VDYDKVPGVVYTNPEVASVGKTEEQVKETGVEYRVGKFPFMANSR---AKAIDNAEG-LV 401
Query: 467 KLVLCAKTNKVLGLHMCGEDAPEIVQGFAVAVKAGLTKADFDATVGVHPTAAE 519
K++ +T+K+LG+H+ +A E++ A+A++ + D HPT +E
Sbjct: 402 KIIAEKETDKILGVHIMAPNAGELIHEAAIALQYDASSEDIARVCHAHPTMSE 454
|
| >1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 Length = 458 | Back alignment and structure |
|---|
Score = 272 bits (699), Expect = 6e-86
Identities = 128/457 (28%), Positives = 210/457 (45%), Gaps = 28/457 (6%)
Query: 72 DFDLFTIGAGSGG-VRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKL 130
L IG G GG V A R A G + E + +GGTC+ GC+P K
Sbjct: 5 QTTLLIIGGGPGGYVAAIR-AGQLGIPTVLVE-------GQA---LGGTCLNIGCIPSKA 53
Query: 131 LVYASKFSHE---FDESNGFGWKYGTEPQHDWSTLIANKNAELQRLTGIYKNILINAGIT 187
L++ ++ H+ F E + G P+ D +A K+ + RLT +L G+
Sbjct: 54 LIHVAEQFHQASRFTEPSPLGISVA-SPRLDIGQSVAWKDGIVDRLTTGVAALLKKHGVK 112
Query: 188 LIEGRGKIVDPHTVDVDGKLYSARHILISVGGRPF-IPDIPGSEYAIDSDAALDLPSKPE 246
++ G K++D V+VDG+ H+L++ G +P +P I S AL + P+
Sbjct: 113 VVHGWAKVLDGKQVEVDGQRIQCEHLLLATGSSSVELPMLPLGGPVISSTEALAPKALPQ 172
Query: 247 KIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRDFVAEQMSLRGIEFHTE 306
+ +VGGGYI LE + L ++V V ++++L +D ++ VAE + GI H
Sbjct: 173 HLVVVGGGYIGLELGIAYRKLGAQVSVVEARERILPTYDSELTAPVAESLKKLGIALHLG 232
Query: 307 ESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNTKNLGLEKVGVKMTKNGAIEVD 366
S + + K + ++ V+ A GRRP TK LE + +KM I +D
Sbjct: 233 HSVEGYENGCLLANDGKGGQLRLE-ADRVLVAVGRRPRTKGFNLECLDLKMNGAA-IAID 290
Query: 367 EYSGTAVPSIWAVGDVTDRINLTPVALMEGGALAKTLFQAEPTKPDYSAVPSAVFSQPPI 426
E T++ ++WA+GDV L A+ +G +A+ + + + + +A+ + F+ P +
Sbjct: 291 ERCQTSMHNVWAIGDVAGEPMLAHRAMAQGEMVAEII-AGKARRFEPAAIAAVCFTDPEV 349
Query: 427 GQVGLSEEQAIQEYGDIDV----FTANFRPLKATLSGLPDRIFMKLVLCAKTNKVLGLHM 482
VG + EQA Q+ D V F AN R A F+++V + +LG
Sbjct: 350 VVVGKTPEQASQQGLDCIVAQFPFAANGR---AMSLESKSG-FVRVVARRDNHLILGWQA 405
Query: 483 CGEDAPEIVQGFAVAVKAGLTKADFDATVGVHPTAAE 519
G E+ FA +++ G D T+ HPT E
Sbjct: 406 VGVAVSELSTAFAQSLEMGACLEDVAGTIHAHPTLGE 442
|
| >1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 Length = 455 | Back alignment and structure |
|---|
Score = 268 bits (689), Expect = 1e-84
Identities = 138/463 (29%), Positives = 229/463 (49%), Gaps = 31/463 (6%)
Query: 72 DFDLFTIGAGSGG-VRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKL 130
+ + +GAG GG V A R AA G V I E G +GG C+ GC+P K
Sbjct: 3 ETETLVVGAGPGGYVAAIR-AAQLGQKVTIVE----------KGNLGGVCLNVGCIPSKA 51
Query: 131 LVYASKFSHEFDESNGFGWKYGTEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIE 190
L+ AS + S G K D++ + K + +++LTG + +L + +++
Sbjct: 52 LISASHRYEQAKHSEEMGIKAE-NVTIDFAKVQEWKASVVKKLTGGVEGLLKGNKVEIVK 110
Query: 191 GRGKIVDPHTVDVDG----KLYSARHILISVGGRPF-IPDIPGSEYAIDSDAALDLPSKP 245
G VD +TV V + Y+ ++ +I+ G RP +P+ S +DS AL+L P
Sbjct: 111 GEAYFVDANTVRVVNGDSAQTYTFKNAIIATGSRPIELPNFKFSNRILDSTGALNLGEVP 170
Query: 246 EKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRDFVAEQMSLRGIEFHT 305
+ + ++GGGYI +E ++ ++V + ++L GF++ + + +++ +G+E T
Sbjct: 171 KSLVVIGGGYIGIELGTAYANFGTKVTILEGAGEILSGFEKQMAAIIKKRLKKKGVEVVT 230
Query: 306 EESPQAILKSTDGSLSVKTNKG---TVDGFSHVMFATGRRPNTKNLGLEKVGVKMTKNGA 362
+ + + ++V +V+ GRRPNT LGLE++G+KMT G
Sbjct: 231 NALAKGA-EEREDGVTVTYEANGETKTIDADYVLVTVGRRPNTDELGLEQIGIKMTNRGL 289
Query: 363 IEVDEYSGTAVPSIWAVGDVTDRINLTPVALMEGGALAKTLFQAEPTKPDYSAVPSAVFS 422
IEVD+ T+VP+I+A+GD+ L A EG A+ + P+ DY A+P+ VFS
Sbjct: 290 IEVDQQCRTSVPNIFAIGDIVPGPALAHKASYEGKVAAEAI-AGHPSAVDYVAIPAVVFS 348
Query: 423 QPPIGQVGLSEEQAIQEYGDIDV----FTANFRPLKATLSGLPDRIFMKLVLCAKTNKVL 478
P VG E+QA E D+ F AN R A D F+KLV+ + ++
Sbjct: 349 DPECASVGYFEQQAKDEGIDVIAAKFPFAANGR---ALALNDTDG-FLKLVVRKEDGVII 404
Query: 479 GLHMCGEDAPEIVQGFAVAVKAGLTKADFDATVGVHPTAAEEF 521
G + G +A +++ +A++AG+T D T+ HPT E
Sbjct: 405 GAQIIGPNASDMIAELGLAIEAGMTAEDIALTIHAHPTLGEIA 447
|
| >3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti} Length = 491 | Back alignment and structure |
|---|
Score = 269 bits (691), Expect = 2e-84
Identities = 138/501 (27%), Positives = 228/501 (45%), Gaps = 51/501 (10%)
Query: 48 FQCRRRHVAARAKSDNGAELPSHYDFDLFTIGAGSGG-VRASRFAANFGASVAICELPFS 106
H + S +DL IG+G GG V A + AA G VA+ E
Sbjct: 1 MHHHHHHSSGVDLGTENLYFQSMMAYDLIVIGSGPGGYVCAIK-AAQLGMKVAVVE---- 55
Query: 107 TISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDESNGFGWKYG---TEPQHDWSTLI 163
GGTC+ GC+P K L++AS F ++ G P+ + ++
Sbjct: 56 -----KRSTYGGTCLNVGCIPSKALLHAS---EMFHQAQHGLEALGVEVANPKLNLQKMM 107
Query: 164 ANKNAELQRLT-GIY----KNILINAGITLIEGRGKIVDPHTVDVDG-----KLYSARHI 213
A+K+A ++ G+ KN I +G GK++ V V ++ A+++
Sbjct: 108 AHKDATVKSNVDGVSFLFKKN-----KIDGFQGTGKVLGQGKVSVTNEKGEEQVLEAKNV 162
Query: 214 LISVGGR----PFIPDIPGSEYAIDSDAALDLPSKPEKIAIVGGGYIALEFAGIFSGLTS 269
+I+ G P + + + S AL L P + +VGGG I LE +++ L +
Sbjct: 163 VIATGSDVAGIPGVEVAFDEKTIVSSTGALALEKVPASMIVVGGGVIGLELGSVWARLGA 222
Query: 270 EVHVFIRQKKVLRGFDEDIRDFVAEQMSLRGIEFHTEESPQAILKSTDG-SLSVKTNKG- 327
+V V +L G D ++ + ++ +GI+F +KS DG ++ + KG
Sbjct: 223 KVTVVEFLDTILGGMDGEVAKQLQRMLTKQGIDFKLGAKVTGAVKSGDGAKVTFEPVKGG 282
Query: 328 ---TVDGFSHVMFATGRRPNTKNLGLEKVGVKMTKNGAIEVDEYSGTAVPSIWAVGDVTD 384
T+D V+ ATGR+P+T LGL K GV + G +E+D + T++ ++A+GDV
Sbjct: 283 EATTLD-AEVVLIATGRKPSTDGLGLAKAGVVLDSRGRVEIDRHFQTSIAGVYAIGDVVR 341
Query: 385 RINLTPVALMEGGALAKTLFQAEPTKPDYSAVPSAVFSQPPIGQVGLSEEQAIQEYGDID 444
L A EG A+A+ + + +Y +P V++QP + VG +EE+
Sbjct: 342 GPMLAHKAEDEGVAVAEII-AGQAGHVNYDVIPGVVYTQPEVASVGKTEEELKAAGVAYK 400
Query: 445 V----FTANFRPLKATLSGLPDRIFMKLVLCAKTNKVLGLHMCGEDAPEIVQGFAVAVKA 500
+ FTAN R A D F+K++ +T++VLG H+ G A E++ AV ++
Sbjct: 401 IGKFPFTANGR---ARAMLQTDG-FVKILADKETDRVLGGHIIGFGAGEMIHEIAVLMEF 456
Query: 501 GLTKADFDATVGVHPTAAEEF 521
G + D T HPT +E
Sbjct: 457 GGSSEDLGRTCHAHPTMSEAV 477
|
| >2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A* Length = 464 | Back alignment and structure |
|---|
Score = 267 bits (686), Expect = 6e-84
Identities = 139/465 (29%), Positives = 223/465 (47%), Gaps = 42/465 (9%)
Query: 72 DFDLFTIGAGSGG-VRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKL 130
+DL IG G GG A R AA G V E G VGG C+ GC+P K
Sbjct: 6 TYDLIVIGTGPGGYHAAIR-AAQLGLKVLAVE----------AGEVGGVCLNVGCIPTKA 54
Query: 131 LVYASKFSHEFDESNGFGWKYGTEPQHDWSTLIANKNAELQRLT-GIY----KNILINAG 185
L++A++ H + GFG K +P+ D L ++ +++LT G+ N G
Sbjct: 55 LLHAAETLHHLKVAEGFGLK--AKPELDLKKLGGWRDQVVKKLTGGVGTLLKGN-----G 107
Query: 186 ITLIEGRGKIVDPHTVDVDGKLYSARHILISVGGRPF-IPDIPGSEYAIDSDAALDLPSK 244
+ L+ G ++V P V+V G+ Y A+ ++++ G P + P E DS AL +
Sbjct: 108 VELLRGFARLVGPKEVEVGGERYGAKSLILATGSEPLELKGFPFGEDVWDSTRALKVEEG 167
Query: 245 -PEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRDFVAEQMSLRGIEF 303
P+++ ++GGG + LE ++ L +EV + ++L D + + + GI
Sbjct: 168 LPKRLLVIGGGAVGLELGQVYRRLGAEVTLIEYMPEILPQGDPETAALLRRALEKEGIRV 227
Query: 304 HTEESPQAILKSTDG-SLSVKTNKG----TVDGFSHVMFATGRRPNTKNLGLEKVGVKMT 358
T+ K DG + ++ +G V V+ A GR+P T+ LGLEK GVK+
Sbjct: 228 RTKTKAVGYEKKKDGLHVRLEPAEGGEGEEVV-VDKVLVAVGRKPRTEGLGLEKAGVKVD 286
Query: 359 KNGAIEVDEYSGTAVPSIWAVGDVTDRINLTPVALMEGGALAKTLFQAEPTKPDYSAVPS 418
+ G I V+ T+VP ++A+GD L A+ EG A+ + + DY VPS
Sbjct: 287 ERGFIRVNARMETSVPGVYAIGDAARPPLLAHKAMREGLIAAENA-AGKDSAFDY-QVPS 344
Query: 419 AVFSQPPIGQVGLSEEQAIQEYGDIDV----FTANFRPLKATLSGLPDRIFMKLVLCAKT 474
V++ P VGL+EE+A + + V A+ R A G + +K+V +T
Sbjct: 345 VVYTSPEWAGVGLTEEEAKRAGYKVKVGKFPLAASGR---ALTLGGAEG-MVKVVGDEET 400
Query: 475 NKVLGLHMCGEDAPEIVQGFAVAVKAGLTKADFDATVGVHPTAAE 519
+ +LG+ + G A E++ A+A++ G T D TV HPT +E
Sbjct: 401 DLLLGVFIVGPQAGELIAEAALALEMGATLTDLALTVHPHPTLSE 445
|
| >3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A* Length = 476 | Back alignment and structure |
|---|
Score = 262 bits (671), Expect = 1e-81
Identities = 136/474 (28%), Positives = 220/474 (46%), Gaps = 47/474 (9%)
Query: 72 DFDLFTIGAGSGG-VRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKL 130
FD+ IGAG GG V A + +A G A+ E +GGTC+ GC+P K
Sbjct: 3 KFDVIVIGAGPGGYVAAIK-SAQLGLKTALIEKYKGKEGKTA---LGGTCLNVGCIPSKA 58
Query: 131 LVYASKF----SHEFDESNGFGWKYGTEPQHDWSTLIANKNAELQRLT-GIY----KNIL 181
L+ +S F G G E D T+IA K+ ++ LT G+ N
Sbjct: 59 LLDSSYKFHEAHESFKL---HGISTG-EVAIDVPTMIARKDQIVRNLTGGVASLIKAN-- 112
Query: 182 INAGITLIEGRGKIVDPHTVDVDG-----KLYSARHILISVGGRPF-IPDIP-GSEYAID 234
G+TL EG GK++ V+V ++ +++++ G +P IP P + +D
Sbjct: 113 ---GVTLFEGHGKLLAGKKVEVTAADGSSQVLDTENVILASGSKPVEIPPAPVDQDVIVD 169
Query: 235 SDAALDLPSKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRDFVAE 294
S ALD + P K+ ++G G I LE +++ L +EV V K L DE + +
Sbjct: 170 STGALDFQNVPGKLGVIGAGVIGLELGSVWARLGAEVTVLEAMDKFLPAVDEQVAKEAQK 229
Query: 295 QMSLRGIEFHTEESPQAILKSTDG-SLSVKTNKG----TVDGFSHVMFATGRRPNTKNLG 349
++ +G++ ++ +G D ++ A GRRP T +L
Sbjct: 230 ILTKQGLKILLGARVTGTEVKNKQVTVKFVDAEGEKSQAFD---KLIVAVGRRPVTTDLL 286
Query: 350 LEKVGVKMTKNGAIEVDEYSGTAVPSIWAVGDVTDRINLTPVALMEGGALAKTLFQAEPT 409
GV + + G I VD+Y T+VP ++A+GDV L A EG +A+ +
Sbjct: 287 AADSGVTLDERGFIYVDDYCATSVPGVYAIGDVVRGAMLAHKASEEGVVVAERI-AGHKA 345
Query: 410 KPDYSAVPSAVFSQPPIGQVGLSEEQAIQEYGDIDV----FTANFRPLKATLSGLPDRIF 465
+ +Y +P+ +++ P I VG +E+ E I+V F A+ R A + F
Sbjct: 346 QMNYDLIPAVIYTHPEIAGVGKTEQALKAEGVAINVGVFPFAASGR---AMAANDTAG-F 401
Query: 466 MKLVLCAKTNKVLGLHMCGEDAPEIVQGFAVAVKAGLTKADFDATVGVHPTAAE 519
+K++ AKT++VLG+H+ G A E+VQ A+A++ G + D V HP +E
Sbjct: 402 VKVIADAKTDRVLGVHVIGPSAAELVQQGAIAMEFGTSAEDLGMMVFAHPALSE 455
|
| >1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A* Length = 482 | Back alignment and structure |
|---|
Score = 260 bits (667), Expect = 5e-81
Identities = 134/479 (27%), Positives = 211/479 (44%), Gaps = 50/479 (10%)
Query: 72 DFDLFTIGAGSGG-VRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKL 130
++D+ +G G GG A AA+ G VAI E +T +GG C+ GC+P K
Sbjct: 6 EYDVVVLGGGPGGYSAAFA-AADEGLKVAIVE------RYKT---LGGVCLNVGCIPSKA 55
Query: 131 LVYASKFSHEFDESNGFGWKYGTEPQHDWSTLIANKNAELQRLT-GIY----KNILINAG 185
L++ + E G KY EP+ D L A K+ + RLT G+
Sbjct: 56 LLHNAAVIDEVRHLAANGIKYP-EPELDIDMLRAYKDGVVSRLTGGLAGMAKSR-----K 109
Query: 186 ITLIEGRGKIVDPHTVDVDG---------------KLYSARHILISVGGRPF-IPDIPGS 229
+ +I+G G+ +DPH ++V K+ + ++ +I+ G R +P IP
Sbjct: 110 VDVIQGDGQFLDPHHLEVSLTAGDAYEQAAPTGEKKIVAFKNCIIAAGSRVTKLPFIPED 169
Query: 230 EYAIDSDAALDLPSKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIR 289
IDS AL L P K+ I+GGG I LE ++S L S + V +++G D D+
Sbjct: 170 PRIIDSSGALALKEVPGKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDGLMQGADRDLV 229
Query: 290 DFVAEQMSLRGIEFHTEESPQAILKSTDG-SLSVKTNKGT--VDGFSHVMFATGRRPNTK 346
+Q R A+ DG ++ + + V+ A GR PN K
Sbjct: 230 KVWQKQNEYRFDNIMVNTKTVAVEPKEDGVYVTFEGANAPKEPQRYDAVLVAAGRAPNGK 289
Query: 347 NLGLEKVGVKMTKNGAIEVDEYSGTAVPSIWAVGDVTDRINLTPVALMEGGALAKTLFQA 406
+ EK GV +T G IEVD+ T VP I+A+GD+ + L A+ EG A+
Sbjct: 290 LISAEKAGVAVTDRGFIEVDKQMRTNVPHIYAIGDIVGQPMLAHKAVHEGHVAAENC-AG 348
Query: 407 EPTKPDYSAVPSAVFSQPPIGQVGLSEEQAIQEYGDIDV----FTANFRPLKATLSGLPD 462
D +P ++ P + VG +E A I + A+ R A +G
Sbjct: 349 HKAYFDARVIPGVAYTSPEVAWVGETELSAKASARKITKANFPWAASGR---AIANGCDK 405
Query: 463 RIFMKLVLCAKTNKVLGLHMCGEDAPEIVQGFAVAVKAGLTKADFDATVGVHPTAAEEF 521
F KL+ A+T +++G + G + +++ +A++ G AD T+ HPT E
Sbjct: 406 P-FTKLIFDAETGRIIGGGIVGPNGGDMIGEVCLAIEMGCDAADIGKTIHPHPTLGESI 463
|
| >1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A* Length = 478 | Back alignment and structure |
|---|
Score = 258 bits (662), Expect = 3e-80
Identities = 125/482 (25%), Positives = 213/482 (44%), Gaps = 58/482 (12%)
Query: 72 DFDLFTIGAGSGG-VRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKL 130
D+ IG G G V A + AA G + A E G +GGTC+ GC+P K
Sbjct: 5 SHDVVIIGGGPAGYVAAIK-AAQLGFNTACVE---------KRGKLGGTCLNVGCIPSKA 54
Query: 131 LVYASKF----SHEFDESNGFGWKYGTEPQHDWSTLIANKNAELQRLT-GIY----KNIL 181
L+ S E + G + + + + K+ +++LT GI KN
Sbjct: 55 LLNNSHLFHQMHTEAQK---RGIDVNGDIKINVANFQKAKDDAVKQLTGGIELLFKKN-- 109
Query: 182 INAGITLIEGRGKIVDPHTVDVDG-----------KLYSARHILISVGGRPF-IPDIP-G 228
+T +G G D + V + ++I+++ G P I
Sbjct: 110 ---KVTYYKGNGSFEDETKIRVTPVDGLEGTVKEDHILDVKNIIVATGSEVTPFPGIEID 166
Query: 229 SEYAIDSDAALDLPSKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDI 288
E + S AL L P+++ I+GGG I LE ++S L S+V V Q ++ D ++
Sbjct: 167 EEKIVSSTGALSLKEIPKRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQIGASMDGEV 226
Query: 289 RDFVAEQMSLRGIEFHTEESPQAILKSTDG---SLSVKTNKG----TVDGFSHVMFATGR 341
+ + +G++F + ++ D + V+ K ++ ++ A GR
Sbjct: 227 AKATQKFLKKQGLDFKLSTKVISAKRNDDKNVVEIVVEDTKTNKQENLE-AEVLLVAVGR 285
Query: 342 RPNTKNLGLEKVGVKMTKNGAIEVDEYSGTAVPSIWAVGDVTDRINLTPVALMEGGALAK 401
RP LG EK+G+++ K G + +D+ + P I VGDVT L A EG A +
Sbjct: 286 RPYIAGLGAEKIGLEVDKRGRLVIDDQFNSKFPHIKVVGDVTFGPMLAHKAEEEGIAAVE 345
Query: 402 TLFQAEPTKPDYSAVPSAVFSQPPIGQVGLSEEQAIQEYGDIDV----FTANFRPLKATL 457
L + +Y+ +PS ++S P + VG +EEQ + D + F AN R A
Sbjct: 346 ML-KTGHGHVNYNNIPSVMYSHPEVAWVGKTEEQLKEAGIDYKIGKFPFAANSR---AKT 401
Query: 458 SGLPDRIFMKLVLCAKTNKVLGLHMCGEDAPEIVQGFAVAVKAGLTKADFDATVGVHPTA 517
+ + F+K+++ +KT ++LG H+ G +A E++ +A++ G + D HPT
Sbjct: 402 NQDTEG-FVKILIDSKTERILGAHIIGPNAGEMIAEAGLALEYGASAEDVARVCHAHPTL 460
Query: 518 AE 519
+E
Sbjct: 461 SE 462
|
| >2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi} Length = 468 | Back alignment and structure |
|---|
Score = 257 bits (660), Expect = 4e-80
Identities = 128/478 (26%), Positives = 222/478 (46%), Gaps = 55/478 (11%)
Query: 73 FDLFTIGAGSGG-VRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLL 131
+D+ IG G GG V + + AA G A E G +GGTC+ GC+P K L
Sbjct: 3 YDVVVIGGGPGGYVASIK-AAQLGMKTACVE---------KRGALGGTCLNVGCIPSKAL 52
Query: 132 VYASKF----SHEFDESNGFGWKYGTEPQHDWSTLIANKNAELQRLT-GIY----KNILI 182
++A+ F +G G D + + K ++ LT G+ KN
Sbjct: 53 LHATHLYHDAHANFAR---YGLMGGEGVTMDSAKMQQQKERAVKGLTGGVEYLFKKN--- 106
Query: 183 NAGITLIEGRGKIVDPHTVDVDG-----KLYSARHILISVGGRPF-IPDIPGSEYAI-DS 235
+T +G G H++ V+G ++ + +I+ G P +P +P E + S
Sbjct: 107 --KVTYYKGEGSFETAHSIRVNGLDGKQEMLETKKTIIATGSEPTELPFLPFDEKVVLSS 164
Query: 236 DAALDLPSKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRDFVAEQ 295
AL LP P+ + ++GGG I LE +++ L +EV V + DED+ + +
Sbjct: 165 TGALALPRVPKTMVVIGGGVIGLELGSVWARLGAEVTVVEFAPRCAPTLDEDVTNALVGA 224
Query: 296 MS-LRGIEFHTEESPQAILKSTDG-SLSVKTNKGTVDGFS--HVMFATGRRPNTKNLGLE 351
++ ++F T + D SL V+ G + + ++ + GRRP T LGL+
Sbjct: 225 LAKNEKMKFMTSTKVVGGTNNGDSVSLEVEGKNGKRETVTCEALLVSVGRRPFTGGLGLD 284
Query: 352 KVGVKMTKNGAIEVDEYSGTAVPSIWAVGDVTDRINLTP----VALMEGGALAKTLFQAE 407
K+ V + G +++ ++ T++P ++A+GDV D+ P A EG A A+ L +
Sbjct: 285 KINVAKNERGFVKIGDHFETSIPDVYAIGDVVDK---GPMLAHKAEDEGVACAEIL-AGK 340
Query: 408 PTKPDYSAVPSAVFSQPPIGQVGLSEEQAIQEYGDIDV----FTANFRPLKATLSGLPDR 463
P +Y +P+ +++ P + VG SE++ +E V F AN R A D
Sbjct: 341 PGHVNYGVIPAVIYTMPEVASVGKSEDELKKEGVAYKVGKFPFNANSR---AKAVSTEDG 397
Query: 464 IFMKLVLCAKTNKVLGLHMCGEDAPEIVQGFAVAVKAGLTKADFDATVGVHPTAAEEF 521
F+K+++ T+++LG+H+ A E++ +A++ G + D T HPT +E
Sbjct: 398 -FVKVLVDKATDRILGVHIVCTTAGELIGEACLAMEYGASSEDVGRTCHAHPTMSEAL 454
|
| >1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A* Length = 474 | Back alignment and structure |
|---|
Score = 254 bits (652), Expect = 8e-79
Identities = 134/477 (28%), Positives = 212/477 (44%), Gaps = 48/477 (10%)
Query: 71 YDFDLFTIGAGSGG-VRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKK 129
D D+ IG+G GG V A + AA G E +GGTC+ GC+P K
Sbjct: 5 IDADVTVIGSGPGGYVAAIK-AAQLGFKTVCIE---------KNETLGGTCLNVGCIPSK 54
Query: 130 LLVYASKFSHEFDESN--GFGWKYGTEPQHDWSTLIANKNAELQRLT-GIY----KNILI 182
L+ S + H ++ G + E + + ++ K+ ++ LT GI +N
Sbjct: 55 ALLNNSHYYHMAHGTDFASRGIEMS-EVRLNLDKMMEQKSTAVKALTGGIAHLFKQN--- 110
Query: 183 NAGITLIEGRGKIVDPHTVDVDG-----KLYSARHILISVGGRPF-IPDIPGSEYAI-DS 235
+ + G GKI + V ++ ++ILI+ G P I E I S
Sbjct: 111 --KVVHVNGYGKITGKNQVTATKADGGTQVIDTKNILIATGSEVTPFPGITIDEDTIVSS 168
Query: 236 DAALDLPSKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVL-RGFDEDIRDFVAE 294
AL L PEK+ ++G G I +E ++ L ++V V G D +I
Sbjct: 169 TGALSLKKVPEKMVVIGAGVIGVELGSVWQRLGADVTAVEFLGHVGGVGIDMEISKNFQR 228
Query: 295 QMSLRGIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSH------VMFATGRRPNTKNL 348
+ +G +F K +DG + V + + G + ++ GRRP TKNL
Sbjct: 229 ILQKQGFKFKLNTKVTGATKKSDGKIDV-SIEAASGGKAEVITCDVLLVCIGRRPFTKNL 287
Query: 349 GLEKVGVKMTKNGAIEVDEYSGTAVPSIWAVGDVTDRINLTPVALMEGGALAKTLFQAEP 408
GLE++G+++ G I V+ T +P+I+A+GDV L A EG + +
Sbjct: 288 GLEELGIELDPRGRIPVNTRFQTKIPNIYAIGDVVAGPMLAHKAEDEGIICVEGM-AGGA 346
Query: 409 TKPDYSAVPSAVFSQPPIGQVGLSEEQAIQEYGDIDV----FTANFRPLKATLSGLPDRI 464
DY+ VPS +++ P + VG SEEQ +E + V F AN R A + D
Sbjct: 347 VHIDYNCVPSVIYTHPEVAWVGKSEEQLKEEGIEYKVGKFPFAANSR---AKTNADTDG- 402
Query: 465 FMKLVLCAKTNKVLGLHMCGEDAPEIVQGFAVAVKAGLTKADFDATVGVHPTAAEEF 521
+K++ T++VLG H+ G A E+V A+A++ G + D HPT +E F
Sbjct: 403 MVKILGQKSTDRVLGAHILGPGAGEMVNEAALALEYGASCEDIARVCHAHPTLSEAF 459
|
| >3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus} Length = 466 | Back alignment and structure |
|---|
Score = 247 bits (632), Expect = 5e-76
Identities = 109/470 (23%), Positives = 183/470 (38%), Gaps = 47/470 (10%)
Query: 72 DFDLFTIGAGSGG-VRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKL 130
+D+ IGAG G A R A +V + + G +GG C+ GCVP K
Sbjct: 4 KYDVVVIGAGGAGYHGAFR-LAKAKYNVLMAD---------PKGELGGNCLYSGCVPSKT 53
Query: 131 LVYASKFSHEFDESNGFGWKYGTEPQHDWSTLIANKNAELQ-RLTGIYKNILINAGITLI 189
+ + D+ST+ K+ + R +N+ +T
Sbjct: 54 VREVI---QTAWRLTNIA---NVKIPLDFSTVQDRKDYVQELRFKQHKRNMSQYETLTFY 107
Query: 190 EGRGKIVDPHTVDV---DGK--LYSARHILISVGGRPFIPDIPGSEYAIDSDAAL----D 240
+G KI DP V V +GK R+++I+ G +PG EY + SD
Sbjct: 108 KGYVKIKDPTHVIVKTDEGKEIEAETRYMIIASGAETAKLRLPGVEYCLTSDDIFGYKTS 167
Query: 241 LPSKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGF-DEDIRDFVAEQMSLR 299
P+ + I+G GYI LE A IF + + H+ + L D+DI V +S+
Sbjct: 168 FRKLPQDMVIIGAGYIGLEIASIFRLMGVQTHIIEMLDRALITLEDQDI---VNTLLSIL 224
Query: 300 GIEFHTEESPQAILKSTDGSLSV----KTNKGTVDGFSHVMFATGRRPNTKNLGLEKVGV 355
+ + K D V K + V+ A GRRP G ++G+
Sbjct: 225 KLNIKFNSPVTEVKKIKDDEYEVIYSTKDGSKKSIFTNSVVLAAGRRPVIPE-GAREIGL 283
Query: 356 KMTKNGAIEVDEYSGTAVPSIWAVGDVTDRINLTPVALMEGGALAKTL--FQAEPTKPDY 413
++K G I VDE T +P+++A GD A+ A A + D
Sbjct: 284 SISKTG-IVVDETMKTNIPNVFATGDANGLAPYYHAAVRMSIAAANNIMANGMPVDYVDV 342
Query: 414 SAVPSAVFSQPPIGQVGLSEEQAIQEYGDIDV----FTANFRPLKATLSGLPDRIFMKLV 469
++P +++ P + VG+ +A + +I + A + G + +KL+
Sbjct: 343 KSIPVTIYTIPSLSYVGILPSKARKMGIEIVEAEYNMEEDVS---AQIYGQKEG-VLKLI 398
Query: 470 LCAKTNKVLGLHMCGEDAPEIVQGFAVAVKAGLTKADFDATVGVHPTAAE 519
+ +++G M G + ++ +AV GL + HP+ E
Sbjct: 399 FERGSMRLIGAWMIGVHSQYLINELGLAVAYGLNAKQLASFAEQHPSTNE 448
|
| >2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis} Length = 452 | Back alignment and structure |
|---|
Score = 148 bits (375), Expect = 3e-39
Identities = 75/379 (19%), Positives = 141/379 (37%), Gaps = 41/379 (10%)
Query: 152 GTEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIEGRGKIVDPHTVDVDGKLYSAR 211
+D L + EL L G N+ + +T ++ K + + + +
Sbjct: 50 KEIKNNDPRGLFYSSPEELSNL-GA--NVQMRHQVTNVDPETKTIKVKDLI-TNEEKTEA 105
Query: 212 --HILISVGGRPFIPDIPGSEYAI--------DSDAALDLPSKPEKIAIVGGGYIALEFA 261
++++ G +P +P IPG + + D+ + K + I I+G GYI E A
Sbjct: 106 YDKLIMTTGSKPTVPPIPGIDSSRVYLCKNYNDAKKLFEEAPKAKTITIIGSGYIGAELA 165
Query: 262 GIFSGLTSEVHVFIRQKKVL-RGFDEDIRDFVAEQMSLRGIEFHTEESPQAILKSTDGSL 320
+S V++ ++VL + FD++ D +A+ G+ A + D +
Sbjct: 166 EAYSNQNYNVNLIDGHERVLYKYFDKEFTDILAKDYEAHGVNLVLGSKVAAFEEVDDEII 225
Query: 321 SVKTNKGTVDGFSHVMFATGRRPNTKNLGLEKVGVKMTKNGAIEVDEYSGTAVPSIWAVG 380
+ + + + G RPNT+ L K V M NGAI DEY ++ I+A G
Sbjct: 226 TKTLDGKEIKS-DIAILCIGFRPNTE---LLKGKVAMLDNGAIITDEYMHSSNRDIFAAG 281
Query: 381 D---VTDRIN-------LTPVALMEGGALAKTLFQAEPTKPDY--SAVPSAVFSQPPIGQ 428
D V L A+ +G + L + + S+ ++ +
Sbjct: 282 DSAAVHYNPTNSNAYIPLATNAVRQGRLVGLNLTEDKVKDMGTQSSSG-LKLYGRT-YVS 339
Query: 429 VGLSEEQAIQEYGDIDVFTANFRPL-KATLSGLPD--RIFMKLVLCAKTNKVLGLHMCG- 484
G++ A ++ V + + + M LV KT +LG +
Sbjct: 340 TGINTALAKAN--NLKVSEVIIADNYRPEF--MLSTDEVLMSLVYDPKTRVILGGALSSM 395
Query: 485 EDAPEIVQGFAVAVKAGLT 503
D + +V ++ T
Sbjct: 396 HDVSQSANVLSVCIQNKNT 414
|
| >3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis} Length = 452 | Back alignment and structure |
|---|
Score = 144 bits (366), Expect = 5e-38
Identities = 69/340 (20%), Positives = 134/340 (39%), Gaps = 38/340 (11%)
Query: 196 VDP--HTVDV----DGKLYSARHILISVGGRPFIPDIPGSEYAI--------DSDAALDL 241
+D + + + YS ++++ G F I GS+ + AA+ L
Sbjct: 84 MDVENQLIAWTRKEEQQWYSYDKLILATGASQFSTQIRGSQTEKLLKYKFLSGALAAVPL 143
Query: 242 PSKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVL-RGFDEDIRDFVAEQMSLRG 300
+ +A++G G I +E + VHVF + +L + FD+++ V + + +
Sbjct: 144 LENSQTVAVIGAGPIGMEAIDFLVKMKKTVHVFESLENLLPKYFDKEMVAEVQKSLEKQA 203
Query: 301 IEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNTKNLGLEKVGVKMTKN 360
+ FH EE+ I + T + ++T++ + +FA P ++ +
Sbjct: 204 VIFHFEETVLGI-EETANGIVLETSEQEIS-CDSGIFALNLHPQLA---YLDKKIQRNLD 258
Query: 361 GAIEVDEYSGTAVPSIWAVGD---VTDRIN-------LTPVALMEGGALAKTLFQAEPTK 410
I VD Y T+VP+++A+GD V + L A+ G +A L +
Sbjct: 259 QTIAVDAYLQTSVPNVFAIGDCISVMNEPVAETFYAPLVNNAVRTGLVVANNLEEKTHRF 318
Query: 411 PDY--SAVPSAVFSQPPIGQVGLSEEQAIQEYGDIDVFTANFRPLKATLSGLPDRIFMKL 468
+ + V + GL+E + + + + R L I KL
Sbjct: 319 IGSLRTMG-TKVGDY-YLASTGLTETEGLFF--PQTLASIIVRQPAPPLQH-GTEILGKL 373
Query: 469 VLCAKTNKVLGLHMCG-EDAPEIVQGFAVAVKAGLTKADF 507
+ T +VLG +C + E + A++++ G T D
Sbjct: 374 IYDKVTQRVLGAQLCSKNNCLEKINTLALSIQTGQTLTDL 413
|
| >3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A* Length = 480 | Back alignment and structure |
|---|
Score = 144 bits (367), Expect = 6e-38
Identities = 82/385 (21%), Positives = 148/385 (38%), Gaps = 55/385 (14%)
Query: 158 DWSTLIANKNAELQRLTGIYKNILINAGITLIEGRGKIVDPHTVDVDGKLYSAR--HILI 215
LIA + GI + + +T ++ KIV ++ +LI
Sbjct: 90 STEKLIARNVKTFRDKYGI--DAKVRHEVTKVDTEKKIVYAEHTK-TKDVFEFSYDRLLI 146
Query: 216 SVGGRPFIPDIPGSEY-----------AIDSDAALDLPSKPEKIAIVGGGYIALEFAGIF 264
+ G RP +P+ G + A L+ K E + I+GGG I LE A F
Sbjct: 147 ATGVRPVMPEWEGRDLQGVHLLKTIPDAERILKTLETN-KVEDVTIIGGGAIGLEMAETF 205
Query: 265 SGLTSEVHVFIRQKKVLRGFDEDIRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKT 324
L +V + R + +D D+ +++ ++ IE T E+ +A K + +V+T
Sbjct: 206 VELGKKVRMIERNDHIGTIYDGDMAEYIYKEADKHHIEILTNENVKAF-KGNERVEAVET 264
Query: 325 NKGTVDGFSHVMFATGRRPNTKNLGLEKVGVKMTKNGAIEVDEYSGTAVPSIWAVGD--- 381
+KGT V+ + G +PNT LE ++ GAIEV+ Y T V ++A GD
Sbjct: 265 DKGTYK-ADLVLVSVGVKPNTD-F-LEGTNIRTNHKGAIEVNAYMQTNVQDVYAAGDCAT 321
Query: 382 VTDRIN-------LTPVALMEGGALAKTLFQAEPTKPDY--SAVPSAVFSQPPIGQVGLS 432
I + A +G + + + + + + GL+
Sbjct: 322 HYHVIKEIHDHIPIGTTANKQGRLAGLNMLDKRRAFKGTLGTGI-IKFMNL-TLARTGLN 379
Query: 433 EEQAIQEYGDIDVFTANFRPLKATLSGLPDR---------IFMKLVLCAKTNKVLGLHMC 483
E++A I T + +++KL+ + T ++LG +
Sbjct: 380 EKEAKGL--HIPYKTVKVDS--------TNMAGYYPNAKPLYLKLLYRSDTKQLLGGQVI 429
Query: 484 G-EDAPEIVQGFAVAVKAGLTKADF 507
G E + + A+A+ ++ D
Sbjct: 430 GEEGVDKRIDVIAMALFNKMSIHDL 454
|
| >3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii} Length = 449 | Back alignment and structure |
|---|
Score = 143 bits (362), Expect = 2e-37
Identities = 88/349 (25%), Positives = 150/349 (42%), Gaps = 55/349 (15%)
Query: 196 VDP--HTVDVDGKLYSAR--HILISVGGRPFIPDIPGSEY-----------AIDSDAALD 240
VD V +G S +++ + G P +P I G A+ ++
Sbjct: 85 VDTGYVRVRENGGEKSYEWDYLVFANGASPQVPAIEGVNLKGVFTADLPPDALAIREYME 144
Query: 241 LPSKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRG-FDEDIRDFVAEQMSLR 299
K E + I+GGGYI +E A F+ V + +R ++VLR FD+++ D + E++ +
Sbjct: 145 KY-KVENVVIIGGGYIGIEMAEAFAAQGKNVTMIVRGERVLRRSFDKEVTDILEEKLK-K 202
Query: 300 GIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNTKNLGLEKVGVKMTK 359
+ +E I + + V T+ G V+ ATG +PN + L +++GV++ +
Sbjct: 203 HVNLRLQEITMKI-EGEERVEKVVTDAGEYK-AELVILATGIKPNIE-L-AKQLGVRIGE 258
Query: 360 NGAIEVDEYSGTAVPSIWAVGD---VTDRIN-------LTPVALMEGGALAKTLFQAEPT 409
GAI +E T+V +++A GD I L P G + E
Sbjct: 259 TGAIWTNEKMQTSVENVYAAGDVAETRHVITGRRVWVPLAPAGNKMGYVAGSNIAGKELH 318
Query: 410 KPDY--SAVPSAVFSQPPIGQVGLSEEQAIQEYGDIDVFTANFRPLKATLSGLPDR---- 463
P +AV + IG+ GL+E +A++E DV TA + R
Sbjct: 319 FPGVLGTAV-TKFMDVE-IGKTGLTEMEALKE--GYDVRTAFIKA--------STRPHYY 366
Query: 464 -----IFMKLVLCAKTNKVLGLHMCGEDAPEIVQGFAVAVKAGLTKADF 507
I++K V+ +TN++LG+ + G D + A + AG T D
Sbjct: 367 PGGREIWLKGVVDNETNRLLGVQVVGSDILPRIDTAAAMLMAGFTTKDA 415
|
| >2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A* Length = 490 | Back alignment and structure |
|---|
Score = 143 bits (362), Expect = 3e-37
Identities = 83/396 (20%), Positives = 146/396 (36%), Gaps = 66/396 (16%)
Query: 157 HDWSTLIANKNAELQRLTGIYKNILINAGITLIEGRGKIVDPHTVDVDGKLYSAR--HIL 214
L + EL+ L G + + + + I+ K V T VDGK + ++
Sbjct: 89 AGPEGLFYSDKEELESL-GA--KVYMESPVQSIDYDAKTV---TALVDGKNHVETYDKLI 142
Query: 215 ISVGGRPFIPDIPGSEYAIDSDAALDLP---------------------SKPEKIAIVGG 253
+ G +P +P I G+E S +++A+VG
Sbjct: 143 FATGSQPILPPIKGAEIKEGSLEFEATLENLQFVKLYQNSADVIAKLENKDIKRVAVVGA 202
Query: 254 GYIALEFAGIFSGLTSEVHVFIRQKKVL-RGFDEDIRDFVAEQMSLRGIEFHTEESPQAI 312
GYI +E A F EV + L +D D+ D +A+ M GI+ E+ + +
Sbjct: 203 GYIGVELAEAFQRKGKEVVLIDVVDTCLAGYYDRDLTDLMAKNMEEHGIQLAFGETVKEV 262
Query: 313 LKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNTKNLGLEKVGVKMTKNGAIEVDEYSGTA 372
+ T+K D V+ A G RPNT L + + +NGA V++ T+
Sbjct: 263 -AGNGKVEKIITDKNEYDV-DMVILAVGFRPNTT---LGNGKIDLFRNGAFLVNKRQETS 317
Query: 373 VPSIWAVGD---VTDRIN-------LTPVALMEGGALAKTLFQAEPTKPDY--SAVPSAV 420
+P ++A+GD + D L A+ G A + S ++
Sbjct: 318 IPGVYAIGDCATIYDNATRDTNYIALASNAVRTGIVAAHNACGTDLEGIGVQGSNG-ISI 376
Query: 421 FSQPPIGQVGLSEEQAIQEYGDIDVFT--------ANFRPLKATLSGLPDRIFMKLVLCA 472
+ + GL+ E+A + D F + +K+V
Sbjct: 377 YGLH-MVSTGLTLEKAKRL--GFDAAVTEYTDNQKPEFIEHGNF------PVTIKIVYDK 427
Query: 473 KTNKVLGLHMCG-EDAPEIVQGFAVAVKAGLTKADF 507
+ ++LG M ED + F++A++ G+T
Sbjct: 428 DSRRILGAQMAAREDVSMGIHMFSLAIQEGVTIEKL 463
|
| >3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris} Length = 472 | Back alignment and structure |
|---|
Score = 140 bits (355), Expect = 2e-36
Identities = 75/357 (21%), Positives = 134/357 (37%), Gaps = 61/357 (17%)
Query: 196 VDP--HTVDV----DGKLYSAR--HILISVGGRPFIPDIPGSEY-----------AIDSD 236
+D HTV++ G+ + + +++++G + P + G + A
Sbjct: 92 IDRAAHTVEIENLRTGERRTLKYDKLVLALGSKANRPPVEGMDLAGVTPVTNLDEAEFVQ 151
Query: 237 AALDLPSKPEKIAIVGGGYIALEFAGIFSGLTS-EVHVFIRQKKVLRGF-DEDIRDFVAE 294
A+ + K IVGGG+I LE A + + + V +++ GF + + +
Sbjct: 152 HAISAG-EVSKAVIVGGGFIGLEMAVSLADMWGIDTTVVELADQIMPGFTSKSLSQMLRH 210
Query: 295 QMSLRGIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNTKNLGLEKVG 354
+ + HT E + V T+K T+D V+ A G PNT+ L G
Sbjct: 211 DLEKNDVVVHTGEKVVRLEGENGKVARVITDKRTLD-ADLVILAAGVSPNTQ-L-ARDAG 267
Query: 355 VKMTKNGAIEVDEYSGTAVPSIWAVGD---VTDRIN-------LTPVALMEGGALAKTLF 404
+++ GAI VD T+ P I+A GD + + + L +A +G + L
Sbjct: 268 LELDPRGAIIVDTRMRTSDPDIFAGGDCVTIPNLVTGKPGFFPLGSMANRQGRVIGTNLA 327
Query: 405 QAEPTKPDY--SAVPSAVFSQPPIGQVGLSEEQAIQEYGDIDVFTANFRPLKATLSGLPD 462
+ T P S +F GL+ E A++E D + D
Sbjct: 328 DGDATFPGAVGSWA-VKLFEGS-ASGAGLTVEGALRE--GYDAVNVHVEQ--------FD 375
Query: 463 R---------IFMKLVLCAKTNKVLGLHMCGEDAPEIVQG---FAVAVKAGLTKADF 507
R + ++LV+ T +VLG+ + A + + T D
Sbjct: 376 RAHFYPEKTIMTLQLVVDRPTRRVLGIQGFSTLGDALTARINAVATMLASKPTVEDI 432
|
| >1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A* Length = 447 | Back alignment and structure |
|---|
Score = 139 bits (353), Expect = 3e-36
Identities = 84/348 (24%), Positives = 133/348 (38%), Gaps = 48/348 (13%)
Query: 196 VDP--HTVDV----DGKLYSAR--HILISVGGRPFIPDIPGSEY-----------AIDSD 236
+ P H V V G+ ++IS G PF DIPG + AI
Sbjct: 82 IQPKEHQVTVKDLVSGEERVENYDKLIISPGAVPFELDIPGKDLDNIYLMRGRQWAIKLK 141
Query: 237 AALDLPSKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVL-RGFDEDIRDFVAEQ 295
P + + ++G GYI +E A F+ +V V + L D++ D + E+
Sbjct: 142 QKTVDP-EVNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRPLGVYLDKEFTDVLTEE 200
Query: 296 MSLRGIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNTKNLGLEKVGV 355
M I T E+ + + V T+K D V+ A G RPNT K +
Sbjct: 201 MEANNITIATGETVERY-EGDGRVQKVVTDKNAYD-ADLVVVAVGVRPNTA---WLKGTL 255
Query: 356 KMTKNGAIEVDEYSGTAVPSIWAVGD---VTDRIN-------LTPVALMEGGALAKTLFQ 405
++ NG I+ DEY T+ P ++AVGD + L A +G K L +
Sbjct: 256 ELHPNGLIKTDEYMRTSEPDVFAVGDATLIKYNPADTEVNIALATNARKQGRFAVKNLEE 315
Query: 406 AEPTKPDY--SAVPSAVFSQPPIGQVGLSEEQAIQEYGDIDVFTANFRPL-KATLSGLPD 462
P S+ AVF G++E A + + PD
Sbjct: 316 PVKPFPGVQGSSG-LAVFDY-KFASTGINEVMAQKL--GKETKAVTVVEDYLMDF--NPD 369
Query: 463 --RIFMKLVLCAKTNKVLGLHMCG-EDAPEIVQGFAVAVKAGLTKADF 507
+ + KLV +T ++LG + D + ++A++A +T D
Sbjct: 370 KQKAWFKLVYDPETTQILGAQLMSKADLTANINAISLAIQAKMTIEDL 417
|
| >3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A* Length = 588 | Back alignment and structure |
|---|
Score = 139 bits (353), Expect = 1e-35
Identities = 79/382 (20%), Positives = 151/382 (39%), Gaps = 48/382 (12%)
Query: 158 DWSTLIANKNAELQRLTGIYKNILINAGITLIEGRGKIVDPHTVDVDGKLYSAR--HILI 215
+ L+ + + + +I + + + I K + V + Y+ +++
Sbjct: 90 ERQKLLVQTVERMSKRFNL--DIRVLSEVVKINKEEKTITIKNVT-TNETYNEAYDVLIL 146
Query: 216 SVGGRPFIPDIPGSEYA---------IDSDAALDL--PSKPEKIAIVGGGYIALEFAGIF 264
S G +P +P IPG E A D+D KP ++GGG+I +E
Sbjct: 147 SPGAKPIVPSIPGIEEAKALFTLRNVPDTDRIKAYIDEKKPRHATVIGGGFIGVEMVENL 206
Query: 265 SGLTSEVHVFIRQKKVLRGFDEDIRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKT 324
EV + +V+ D ++ +V E M +E E+ A+ +G++
Sbjct: 207 RERGIEVTLVEMANQVMPPIDYEMAAYVHEHMKNHDVELVFEDGVDAL--EENGAVVRLK 264
Query: 325 NKGTVDGFSHVMFATGRRPNTKNLGLEKVGVKMTKNGAIEVDEYSGTAVPSIWAVGD--- 381
+ + ++ A G +P + L + G+ + G I+V+E T+ P I+A+GD
Sbjct: 265 SGSVIQ-TDMLILAIGVQPESS-L-AKGAGLALGVRGTIKVNEKFQTSDPHIYAIGDAIE 321
Query: 382 VTDRIN-------LTPVALMEGGALAKTLFQAEPTKPDY-----SAVPSAVFSQPPIGQV 429
V D + L A +G LA + + Y ++V + VF +
Sbjct: 322 VKDFVTETETMIPLAWPANRQGRMLADIIHGHTDSL--YKGTLGTSV-AKVFDL-TVATT 377
Query: 430 GLSEEQAIQEYGDIDVFTANFRPL-KATLSGLPD--RIFMKLVLCAKTNKVLGLHMCG-E 485
GL+E+ + +I + + A P+ + +KL+ + K+ G G +
Sbjct: 378 GLNEKILKRL--NIPYEVVHVQANSHAGY--YPNATPVLIKLIFNKDSGKIYGAQTLGRD 433
Query: 486 DAPEIVQGFAVAVKAGLTKADF 507
+ + A A+KA LT D
Sbjct: 434 GVDKRMDVIATAIKANLTVLDL 455
|
| >3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A* Length = 565 | Back alignment and structure |
|---|
Score = 133 bits (338), Expect = 1e-33
Identities = 75/398 (18%), Positives = 138/398 (34%), Gaps = 61/398 (15%)
Query: 158 DWSTLIANKNAELQRLTGIYKNILINAGITLIEGRGKIVDPHTVDVDGKLYSAR--HILI 215
S L+ + + + + + I+ K+V + DG Y +L+
Sbjct: 55 QRSALVLQTPESFKARFNV--EVRVKHEVVAIDRAAKLVTVRRLL-DGSEYQESYDTLLL 111
Query: 216 SVGGRPFIPDIPGSEY-----------AIDSDAALDLPSKPEKIAIVGGGYIALEFAGIF 264
S G P +P IPG + + + E +VGGG+I LE
Sbjct: 112 SPGAAPIVPPIPGVDNPLTHSLRNIPDMDRILQTIQMN-NVEHATVVGGGFIGLEMMESL 170
Query: 265 SGLTSEVHVFIRQKKVLRGFDEDIRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLS--- 321
L + + +V+ D ++ F + + +G++ + + ++
Sbjct: 171 HHLGIKTTLLELADQVMTPVDREMAGFAHQAIRDQGVDLRLGTALSEVSYQVQTHVASDA 230
Query: 322 ----------------VKTNKGTVDGFSHVMFATGRRPNTKNLGLEKVGVKMTKNGAIEV 365
+N ++ ++ A G RP T+ L G+ + + G I+V
Sbjct: 231 AGEDTAHQHIKGHLSLTLSNGELLE-TDLLIMAIGVRPETQ-L-ARDAGLAIGELGGIKV 287
Query: 366 DEYSGTAVPSIWAVGD---VTDRIN-------LTPVALMEGGALAKTLFQAEPTKPDY-- 413
+ T+ P+I+AVGD D + L A +G A +F E
Sbjct: 288 NAMMQTSDPAIYAVGDAVEEQDFVTGQACLVPLAGPANRQGRMAADNMFGREERYQGTQG 347
Query: 414 SAVPSAVFSQPPIGQVGLSEEQAIQEYGDIDVFTANFRPL-KATLSGLPD--RIFMKLVL 470
+A+ VF +G G +E+Q Q I A+ P + KL+
Sbjct: 348 TAI-CKVFDL-AVGATGKNEKQLKQA--GIAFEKVYVHTASHASY--YPGAEVVSFKLLF 401
Query: 471 CAKTNKVLGLHMCG-EDAPEIVQGFAVAVKAGLTKADF 507
+ G G + + + AVA +AG+T
Sbjct: 402 DPVKGTIFGAQAVGKDGIDKRIDVMAVAQRAGMTVEQL 439
|
| >1yqz_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.54A {Staphylococcus aureus} Length = 438 | Back alignment and structure |
|---|
Score = 128 bits (325), Expect = 1e-32
Identities = 60/376 (15%), Positives = 125/376 (33%), Gaps = 44/376 (11%)
Query: 158 DWSTLIANKNAELQRLTGIYKNILINAGITLIEGRGKIVDPHTVDVDGKLYSAR--HILI 215
D +A + I + + I + V + + +++
Sbjct: 55 DRRYALAYTPEKFYDRKQI--TVKTYHEVIAINDERQTVSVLNRK-TNEQFEESYDKLIL 111
Query: 216 SVGGRPFIPDIPGS--------EYAIDSDAALDLPSKPEKIAIVGGGYIALEFAGIFSGL 267
S G E D + + +K+ +VG GY++LE
Sbjct: 112 SPGASANSLGFESDITFTLRNLEDTDAIDQFIKAN-QVDKVLVVGAGYVSLEVLENLYER 170
Query: 268 TSEVHVFIRQKKVLRGFDEDIRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTNKG 327
+ R K+ + D D+ + +++ R I + E AI + + G
Sbjct: 171 GLHPTLIHRSDKINKLMDADMNQPILDELDKREIPYRLNEEINAINGNE-----ITFKSG 225
Query: 328 TVDGFSHVMFATGRRPNTKNLGLEKVGVKMTKNGAIEVDEYSGTAVPSIWAVGDVT---- 383
V+ + ++ G PN+K +E +K+ + G I V++ T VP+I+A+GD+
Sbjct: 226 KVEHYDMIIEGVGTHPNSK-F-IESSNIKLDRKGFIPVNDKFETNVPNIYAIGDIATSHY 283
Query: 384 ------DRINLTPVALMEGGALAKTLFQAEPTKPDYSAVPSA---VFSQPPIGQVGLSEE 434
+ L A +A+ + T + + F VG+
Sbjct: 284 RHVDLPASVPLAWGAHRAASIVAEQIA-GNDTIEFKGFLGNNIVKFFDY-TFASVGVKPN 341
Query: 435 QAIQEYGDIDVFTANFRPLKATLSGLPD--RIFMKLVLCAKTNKVLGLHMCG-EDAPEIV 491
+ Q + T + P + +++ ++L G E A + +
Sbjct: 342 ELKQFDYKMVEVTQGAHA-----NYYPGNSPLHLRVYYDTSNRQILRAAAVGKEGADKRI 396
Query: 492 QGFAVAVKAGLTKADF 507
++A+ LT +
Sbjct: 397 DVLSMAMMNQLTVDEL 412
|
| >2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A* Length = 384 | Back alignment and structure |
|---|
Score = 97.2 bits (243), Expect = 4e-22
Identities = 64/315 (20%), Positives = 111/315 (35%), Gaps = 47/315 (14%)
Query: 185 GITLIEG-RGKIVDP--HTVDVDGKLYSARHILISVGGRPFIPDIPGSE----YAI---- 233
++ R +DP + + + R ++++ G P + G Y I
Sbjct: 74 NARILTHTRVTGIDPGHQRIWIGEEEVRYRDLVLAWGAEPIRVPVEGDAQDALYPINDLE 133
Query: 234 DSDAALDLPSKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVL-RGFDEDIRDFV 292
D + ++ ++G G I EFA S ++ V ++V+ V
Sbjct: 134 DYARFRQAAAGKRRVLLLGAGLIGCEFANDLSSGGYQLDVVAPCEQVMPGLLHPAAAKAV 193
Query: 293 AEQMSLRGIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNT---KNLG 349
+ G+ FH ++ K+ +G L + G V V+ A G RP T G
Sbjct: 194 QAGLEGLGVRFHLGPVLASLKKAGEG-LEAHLSDGEVIPCDLVVSAVGLRPRTELAFAAG 252
Query: 350 LEKVGVKMTKNGAIEVDEYSGTAVPSIWAVGDVT--DRINLTPVA-LMEGG-ALAKTLFQ 405
L N I VD T+ +I+A+GD D +NL V LM ALA+TL
Sbjct: 253 LA-------VNRGIVVDRSLRTSHANIYALGDCAEVDGLNLLYVMPLMACARALAQTLAG 305
Query: 406 AEPTKPDYSAVPSAVFSQPPIGQVGLSEEQAIQEYGDIDVFTA-NFRPLKATLSGLPDRI 464
P++ Y +P V + + + R +
Sbjct: 306 -NPSQVAYGPMPVTV-------KT-----------PACPLVVSPPPRGMDGQWLVEGSGT 346
Query: 465 FMKLVLCAKTNKVLG 479
+K++ +V+G
Sbjct: 347 DLKVLCRDTAGRVIG 361
|
| >3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum} Length = 385 | Back alignment and structure |
|---|
Score = 96.5 bits (241), Expect = 8e-22
Identities = 46/237 (19%), Positives = 85/237 (35%), Gaps = 39/237 (16%)
Query: 185 GITLIEG-RGKIVDP--HTV-DVDGKLYSARHILISVGGRPFIPDIPGSEYAI------D 234
I +I +DP V G+ ++I+ G +P ++ D
Sbjct: 76 NIKVITSEFATSIDPNNKLVTLKSGEKIKYEKLIIASGSIANKIKVPHADEIFSLYSYDD 135
Query: 235 SDAALDLPSKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVL-RGFDEDIRDFVA 293
+ D K I+GGG + +E A + + I + L R D D F+
Sbjct: 136 ALKIKDECKNKGKAFIIGGGILGIELAQAIIDSGTPASIGIILEYPLERQLDRDGGLFLK 195
Query: 294 EQMSLRGIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNT---KNLGL 350
+++ GI+ +T + + + G + S V+ A G +PN K+ +
Sbjct: 196 DKLDRLGIKIYTNSNFEEM--------------GDLIRSSCVITAVGVKPNLDFIKDTEI 241
Query: 351 EKVGVKMTKNGAIEVDEYSGTAVPSIWAVGDVT---DRIN-LTPVALMEGGALAKTL 403
I V+++ T++ I+A GDV + L +A +G
Sbjct: 242 AS-------KRGILVNDHMETSIKDIYACGDVAEFYGKNPGLINIANKQGEVAGLNA 291
|
| >3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris} Length = 404 | Back alignment and structure |
|---|
Score = 93.8 bits (234), Expect = 8e-21
Identities = 50/215 (23%), Positives = 78/215 (36%), Gaps = 22/215 (10%)
Query: 184 AGITLIEGRGKIVDP--HTVDV-DGKLYSARHILISVGGRPFIPDIPGSEYA-------- 232
I LI R +D + + G H++++ G R + D+P +
Sbjct: 70 QAIELISDRMVSIDREGRKLLLASGTAIEYGHLVLATGARNRMLDVPNASLPDVLYLRTL 129
Query: 233 IDSDAALDLPSKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVL-RGFDEDIRDF 291
+S+ + + ++G G+I LEFA EV V +V+ R +I +
Sbjct: 130 DESEVLRQRMPDKKHVVVIGAGFIGLEFAATARAKGLEVDVVELAPRVMARVVTPEISSY 189
Query: 292 VAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNT---KNL 348
++ S GI H I D V + G V+ G PN
Sbjct: 190 FHDRHSGAGIRMHYGVRATEIAAEGDRVTGVVLSDGNTLPCDLVVVGVGVIPNVEIAAAA 249
Query: 349 GLEKVGVKMTKNGAIEVDEYSGTAVPSIWAVGDVT 383
GL T G I VD+ T+ P I A+GD
Sbjct: 250 GLP------TAAG-IIVDQQLLTSDPHISAIGDCA 277
|
| >1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 Length = 367 | Back alignment and structure |
|---|
Score = 92.6 bits (231), Expect = 1e-20
Identities = 48/235 (20%), Positives = 88/235 (37%), Gaps = 30/235 (12%)
Query: 185 GITLIEG-RGKIVDP--HTVDVDGKLYSARHILISVGGRPFIPDIPGSEYAI------DS 235
GI + K++D V + ++++ G R P I G EY + D+
Sbjct: 74 GIEIRLAEEAKLIDRGRKVVITEKGEVPYDTLVLATGARAREPQIKGKEYLLTLRTIFDA 133
Query: 236 DAALDLPSKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRDFVAEQ 295
D + + I+GGG+I LE AG + V + I + + G DE++ + + +
Sbjct: 134 DRIKESIENSGEAIIIGGGFIGLELAGNLAEAGYHVKL-IHRGAMFLGLDEELSNMIKDM 192
Query: 296 MSLRGIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNT---KNLGLEK 352
+ G++F + +G L+ + A G PN + G+
Sbjct: 193 LEETGVKFFLNSELLEANE--EGVLT----NSGFIEGKVKICAIGIVPNVDLARRSGIHT 246
Query: 353 VGVKMTKNGAIEVDEYSGTAVPSIWAVGDVT---DRIN-LTPVALMEGGALAKTL 403
I +D+ T+ ++A+GD I A+ + LA L
Sbjct: 247 -------GRGILIDDNFRTSAKDVYAIGDCAEYSGIIAGTAKAAMEQARVLADIL 294
|
| >3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans} Length = 415 | Back alignment and structure |
|---|
Score = 91.1 bits (227), Expect = 6e-20
Identities = 48/217 (22%), Positives = 85/217 (39%), Gaps = 24/217 (11%)
Query: 184 AGITLIEG-RGKIVDP--HTVDV-DGKLYSARHILISVGGRPFIPDIPGSEYA------- 232
+ + G +DP HTV + DG ++ + GG P G++ A
Sbjct: 78 KAVEMKLGAEVVSLDPAAHTVKLGDGSAIEYGKLIWATGGDPRRLSCVGADLAGVHAVRT 137
Query: 233 IDSDAAL--DLPSKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVL-RGFDEDIR 289
+ L +L + + ++GGGYI LE A + + V + +VL R E +
Sbjct: 138 KEDADRLMAELDAGAKNAVVIGGGYIGLEAAAVLTKFGVNVTLLEALPRVLARVAGEALS 197
Query: 290 DFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNT---K 346
+F + G++ T + I V+ G+V V+ G P
Sbjct: 198 EFYQAEHRAHGVDLRTGAAMDCIEGDGTKVTGVRMQDGSVIPADIVIVGIGIVPCVGALI 257
Query: 347 NLGLEKVGVKMTKNGAIEVDEYSGTAVPSIWAVGDVT 383
+ G NG ++VDE+ T++ ++A+GD
Sbjct: 258 SAGAS------GGNG-VDVDEFCRTSLTDVYAIGDCA 287
|
| >3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} Length = 410 | Back alignment and structure |
|---|
Score = 88.4 bits (220), Expect = 5e-19
Identities = 51/259 (19%), Positives = 83/259 (32%), Gaps = 36/259 (13%)
Query: 184 AGITLIEG-RGKIVDP--HTVDV-DGKLYSARHILISVGGRPFIPDIPGSEYA------- 232
A I ++ G +D T+ + DG SA I+I+ G R +PGS+
Sbjct: 70 ARIDMLTGPEVTALDVQTRTISLDDGTTLSADAIVIATGSRARTMALPGSQLPGVVTLRT 129
Query: 233 -IDSDAALDLPSKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVL-RGFDEDIRD 290
D D + ++ IVGGG I E A L V + ++L R I
Sbjct: 130 YGDVQVLRDSWTSATRLLIVGGGLIGCEVATTARKLGLSVTILEAGDELLVRVLGRRIGA 189
Query: 291 FVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNT---KN 347
++ ++ G++ V + G + G P +
Sbjct: 190 WLRGLLTELGVQVELGTGVVGF-SGEGQLEQVMASDGRSFVADSALICVGAEPADQLARQ 248
Query: 348 LGLEKVGVKMTKNGAIEVDEYSGTAVPSIWAVGDVTDRINLT---------PVALMEGGA 398
GL G + VD T ++AVGDV A + A
Sbjct: 249 AGLA------CDRG-VIVDHCGATLAKGVFAVGDVASWPLRAGGRRSLETYMNAQRQAAA 301
Query: 399 LAKTLFQAEPTKPDYSAVP 417
+A + + +P
Sbjct: 302 VAAAILGKNVS---APQLP 317
|
| >1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A* Length = 431 | Back alignment and structure |
|---|
Score = 87.7 bits (218), Expect = 1e-18
Identities = 49/221 (22%), Positives = 78/221 (35%), Gaps = 28/221 (12%)
Query: 184 AGITLIEG-RGKIVDP--HTVDV-DGKLYSARHILISVGGRPFIPDIPGSEYAI------ 233
I L+ G + ++ V + DG+ ++++ GGRP +
Sbjct: 73 QNIQLLGGTQVTAINRDRQQVILSDGRALDYDRLVLATGGRPRPLPVASGAVGKANNFRY 132
Query: 234 -----DSDAALDLPSKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVL-RGFDED 287
D++ ++ ++GGGYI LE A V + +VL R
Sbjct: 133 LRTLEDAECIRRQLIADNRLVVIGGGYIGLEVAATAIKANMHVTLLDTAARVLERVTAPP 192
Query: 288 IRDFVAEQMSLRGIEFHTEESPQAILKSTDGS--LSVKTNKGTVDGFSHVMFATGRRPNT 345
+ F G++ T STD +V GT V+ G PN
Sbjct: 193 VSAFYEHLHREAGVDIRTGTQVCGFEMSTDQQKVTAVLCEDGTRLPADLVIAGIGLIPNC 252
Query: 346 ---KNLGLEKVGVKMTKNGAIEVDEYSGTAVPSIWAVGDVT 383
GL+ NG I ++E+ T+ P I AVGD
Sbjct: 253 ELASAAGLQ------VDNG-IVINEHMQTSDPLIMAVGDCA 286
|
| >4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C* Length = 304 | Back alignment and structure |
|---|
Score = 84.1 bits (209), Expect = 4e-18
Identities = 32/195 (16%), Positives = 70/195 (35%), Gaps = 25/195 (12%)
Query: 201 VDVDGKLYSARHILISVGGRPFIPDIPG-SEYAIDS-------DAALDLPSKPEKIAIVG 252
V D Y A +L++ G + P IP EY S D K + + I+
Sbjct: 97 VTKDHTKYLAERVLLATGMQEEFPSIPNVREYYGKSLFSCPYCDGWEL---KDQPLIIIS 153
Query: 253 GGY-IALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRDFVAEQMSLRGIEFHTEESPQA 311
L + ++++ + ++ + +++S + I
Sbjct: 154 ENEDHTLHMTKLVYNWSTDLVIATN--------GNELSQTIMDELSNKNIPV--ITESIR 203
Query: 312 ILKSTDGSL-SVKTNKGTVDGFSHVMFATGRRPNTKNLGLEKVGVKMTKNGAIEVDEYSG 370
L+ G L V+ + G + + +E++G ++ NG +D++
Sbjct: 204 TLQGEGGYLKKVEFHSGLRIERAGGFIVPTFFRPNQ--FIEQLGCELQSNGTFVIDDFGR 261
Query: 371 TAVPSIWAVGDVTDR 385
T+ +I+ G+ T +
Sbjct: 262 TSEKNIYLAGETTTQ 276
|
| >1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A* Length = 493 | Back alignment and structure |
|---|
Score = 85.2 bits (211), Expect = 9e-18
Identities = 71/348 (20%), Positives = 122/348 (35%), Gaps = 62/348 (17%)
Query: 65 AELPSHYDFDLFTIGAGSGGVRASRF--AANFGASVAICELPFSTISSETTGGVGGTCVL 122
+ PSH F L IG G+ A+R A + GA V I +S +
Sbjct: 6 DKAPSHVPFLL--IGGGTAAFAAARSIRARDPGARVLI-------VSEDP---------- 46
Query: 123 RGCVP-------KKLLVYASKFSHEFDESNGFGWKYGTEPQHDWSTLIANKNAELQRLTG 175
+P K+L + + K + S ++ ++ G
Sbjct: 47 --ELPYMRPPLSKELWFSDDPNVTKTLRFKQWNGKERSIYFQPPSFYVSAQDLPHIENGG 104
Query: 176 IYKNILINAGITLIEGRGKIVDPHTVDVDGKLYSARHILISVGGRP---FIPDIPGSEYA 232
+ +L + ++ R +V DG + LI+ GG P D G+E
Sbjct: 105 V--AVLTGKKVVQLDVRDNMV----KLNDGSQITYEKCLIATGGTPRSLSAIDRAGAEVK 158
Query: 233 I---------DSDAALDLPSKPEKIAIVGGGYIALEFA----GIFSGLTSEVHVFIRQKK 279
D + + + + I I+GGG++ E A L +EV +K
Sbjct: 159 SRTTLFRKIGDFRSLEKISREVKSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKG 218
Query: 280 VL-RGFDEDIRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFA 338
+ + E + ++ E++ G++ Q++ + G L +K G H++ A
Sbjct: 219 NMGKILPEYLSNWTMEKVRREGVKVMPNAIVQSV-GVSSGKLLIKLKDGRKVETDHIVAA 277
Query: 339 TGRRPNT---KNLGLEKVGVKMTKNGAIEVDEYSGTAVPSIWAVGDVT 383
G PN K GLE + G V+ A +IW GD
Sbjct: 278 VGLEPNVELAKTGGLE---IDSDFGG-FRVNAE-LQARSNIWVAGDAA 320
|
| >2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A* Length = 408 | Back alignment and structure |
|---|
Score = 83.8 bits (208), Expect = 2e-17
Identities = 61/260 (23%), Positives = 97/260 (37%), Gaps = 40/260 (15%)
Query: 184 AGITLIEG-RGKIVDP--HTVDV-DGKLYSARHILISVGGRPFIPDIPGSEYAI------ 233
+ + G + DP HTV + DG+ ++++ G P
Sbjct: 72 PEVEWLLGVTAQSFDPQAHTVALSDGRTLPYGTLVLATGAAPRALPTLQGATMPVHTLRT 131
Query: 234 --DSDAALDLPSKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVL-RGFDEDIRD 290
D+ ++ IVGGG I LE A V + Q +++ R + D
Sbjct: 132 LEDARRIQAGLRPQSRLLIVGGGVIGLELAATARTAGVHVSLVETQPRLMSRAAPATLAD 191
Query: 291 FVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNT---KN 347
FVA + +G++ E S + V + GT V+ G N +
Sbjct: 192 FVARYHAAQGVDLRFERSVTGSVDG-----VVLLDDGTRIAADMVVVGIGVLANDALARA 246
Query: 348 LGLEKVGVKMTKNGAIEVDEYSGTAVPSIWAVGDVTDRINLT----------PVALMEGG 397
GL +G I VD Y T P ++A+GDVT + N A +G
Sbjct: 247 AGLA------CDDG-IFVDAYGRTTCPDVYALGDVTRQRNPLSGRFERIETWSNAQNQGI 299
Query: 398 ALAKTLFQAEPTKPDYSAVP 417
A+A+ L +PT P Y+ +P
Sbjct: 300 AVARHL--VDPTAPGYAELP 317
|
| >3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens} Length = 297 | Back alignment and structure |
|---|
Score = 74.9 bits (185), Expect = 5e-15
Identities = 37/222 (16%), Positives = 65/222 (29%), Gaps = 34/222 (15%)
Query: 190 EGRGKIVDPHTVDVDGKLYSARHILISVGGRPFIPDIPG-SEYAIDS-------DAALDL 241
IV G+ +A +++++G +P+I G E +
Sbjct: 85 SFGEFIV----EIDGGRRETAGRLILAMGVTDELPEIAGLRERWGSAVFHCPYCHGYEL- 139
Query: 242 PSKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRDFVAEQMSLRGI 301
KI ++ +A+ A + + D D +A RG+
Sbjct: 140 --DQGKIGVIAASPMAIHHALMLPDWGETTFFTNGIVE----PDADQHALLAA----RGV 189
Query: 302 EFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNT---KNLGLEKVGVKMT 358
T ++ G V G + + R + LG +
Sbjct: 190 RVETTR-----IREIAGHADVVLADGRSIALAGLFTQPKLRITVDWIEKLGCAVE--EGP 242
Query: 359 KNGAIEVDEYSGTAVPSIWAVGDVTDRINLTPVALMEGGALA 400
I D T I+A GDV +A + GA+A
Sbjct: 243 MGSTIVTDPMKQTTARGIFACGDVARPAGSVALA-VGDGAMA 283
|
| >3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum} Length = 319 | Back alignment and structure |
|---|
Score = 66.4 bits (163), Expect = 4e-12
Identities = 50/227 (22%), Positives = 82/227 (36%), Gaps = 39/227 (17%)
Query: 177 YKNILINAGITLIEGRGKIVDPHTVDVDGKLYSARHILISVGGRPFIPDIPG-SEY---- 231
Y I + I+ ++ + Y A++++I+ G + G SEY
Sbjct: 85 YAKIREGVEVRSIKKTQ---GGFDIETNDDTYHAKYVIITTGTTHKHLGVKGESEYFGKG 141
Query: 232 ----AIDSDAALDLPSKPEKIAIVGGGYIALEFAGIF-SGLTSEVHVFIRQKKVLRGFDE 286
+ D L K +++ +GGG A I S V + K E
Sbjct: 142 TSYCST-CDGYL---FKGKRVVTIGGGNSGAI-AAISMSEYVKNVTIIEYMPK-YMC--E 193
Query: 287 DIRDFVAEQMSLRGIEFHTEESPQAILKSTDG--SLSVKTNKGT-------VDGFSHVMF 337
+ +++ R I + I+ + K ++ T DG V
Sbjct: 194 NA---YVQEIKKRNIPYIMNAQVTEIVGDGKKVTGVKYK-DRTTGEEKLIETDG---VFI 246
Query: 338 ATGRRPNTKNLGLEKVGVKMTKNGAIEVDEYSGTAVPSIWAVGDVTD 384
G P T L+ GVK+ + G I VD T+VP ++A GDVT
Sbjct: 247 YVGLIPQTS--FLKDSGVKLDERGYIVVDSRQRTSVPGVYAAGDVTS 291
|
| >3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus} Length = 369 | Back alignment and structure |
|---|
Score = 57.9 bits (140), Expect = 3e-09
Identities = 50/324 (15%), Positives = 109/324 (33%), Gaps = 33/324 (10%)
Query: 78 IGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKF 137
IGAG+ G+ + +FG + I G VG + + + S
Sbjct: 10 IGAGAAGIGMAITLKDFG-------ITDVII--LEKGTVGHS--FKHWPKSTRTITPSFT 58
Query: 138 SHEFDESNGFGWKYGTEPQHDWSTLIANKNAELQRLTGIYK----NILINAGITLIEGRG 193
S+ F + T P ++ + + L + NI N +T I
Sbjct: 59 SNGFGMPDMNAISMDTSPAFTFNEEHISGETYAEYLQVVANHYELNIFENTVVTNISADD 118
Query: 194 KIVDPHTVDVDGKLYSARHILISVG--GRPFIPDIPGSEYAIDSDAALDLPSKPEKIAIV 251
+T+ + Y A +I ++ G P P G Y+ + + + + ++
Sbjct: 119 ---AYYTIATTTETYHADYIFVATGDYNFPKKPFKYGIHYS-EIEDFDNFNKG--QYVVI 172
Query: 252 GGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRDF------VAEQMSLRG--IEF 303
GG + A + S++ ++ + + + +G IE
Sbjct: 173 GGNESGFDAAYQLAKNGSDIALYTSTTGLNDPDADPSVRLSPYTRQRLGNVIKQGARIEM 232
Query: 304 HTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNTKNLGLEKVGVKMTKNGAI 363
+ + + I + + +V + ATG + ++++ V ++ +
Sbjct: 233 NVHYTVKDIDFNNGQYHISFDSGQSVHTPHEPILATGFDATKNPI-VQQLFVTTNQDIKL 291
Query: 364 EVDEYSGTAVPSIWAVGDVTDRIN 387
+ S T P+I+ +G + N
Sbjct: 292 TTHDES-TRYPNIFMIGATVENDN 314
|
| >1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A Length = 521 | Back alignment and structure |
|---|
Score = 58.1 bits (141), Expect = 4e-09
Identities = 41/208 (19%), Positives = 85/208 (40%), Gaps = 33/208 (15%)
Query: 197 DPHTVDVD-GKLYSARHILISVGGRPFIPDIPG-SEY--------AIDSDAALDLPSKPE 246
H ++ G + AR I+I+ G + ++PG +Y D L K +
Sbjct: 301 GLHQIETASGAVLKARSIIIATGAKWRNMNVPGEDQYRTKGVTYCPH-CDGPL---FKGK 356
Query: 247 KIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRDFVAEQMSLRGIEFHTE 306
++A++GGG +E A +G+ V + + ++ D+ ++D V SL+ ++
Sbjct: 357 RVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPE-MKA-DQVLQDKV---RSLKNVDIILN 411
Query: 307 ESPQAILKSTDGSLSVK-TNKGT-------VDGFSHVMFATGRRPNTKNLGLEKVGVKMT 358
+ + ++ ++ + + G + G PNT L + ++
Sbjct: 412 AQTTEVKGDGSKVVGLEYRDRVSGDIHSVALAG---IFVQIGLLPNTHWL---EGALERN 465
Query: 359 KNGAIEVDEYSGTAVPSIWAVGDVTDRI 386
+ G I +D T+V ++A GD T
Sbjct: 466 RMGEIIIDAKCETSVKGVFAAGDCTTVP 493
|
| >3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A* Length = 323 | Back alignment and structure |
|---|
Score = 55.2 bits (134), Expect = 2e-08
Identities = 48/215 (22%), Positives = 83/215 (38%), Gaps = 47/215 (21%)
Query: 197 DPHTVDVD-GKLYSARHILISVGGRPFIPDIPGSE--------YAIDSDAALDLPSKPEK 247
D V + A +++ +G + +PG + Y +DA L K
Sbjct: 100 DEFVVKTKRKGEFKADSVILGIGVKRRKLGVPGEQEFAGRGISYCSVADAPL---FKNRV 156
Query: 248 IAIVGGGYIALEFAGIFSGLTSEVHVF-----IRQKKVL--RGFDEDIRDFVAEQMSLRG 300
+A++GGG ALE A I S +++V++ + + + +
Sbjct: 157 VAVIGGGDSALEGAEILSSYSTKVYLIHRRDTFKAQPIYVETVKKKP------------N 204
Query: 301 IEFHTEESPQAILKSTDGSLS------VKTNKGT---VDGFSHVMFATGRRPNTKNLGLE 351
+EF + I D + +KT + V+G V G P T +
Sbjct: 205 VEFVLNSVVKEIKG--DKVVKQVVVENLKTGEIKELNVNG---VFIEIGFDPPTD--FAK 257
Query: 352 KVGVKMTKNGAIEVDEYSGTAVPSIWAVGDVTDRI 386
G++ NG I+VDE+ T+VP ++A GD T
Sbjct: 258 SNGIETDTNGYIKVDEWMRTSVPGVFAAGDCTSAW 292
|
| >2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus} Length = 335 | Back alignment and structure |
|---|
Score = 54.9 bits (133), Expect = 2e-08
Identities = 39/201 (19%), Positives = 72/201 (35%), Gaps = 32/201 (15%)
Query: 204 DGKLYSARHILISVGGRPFIP---DIPGSE--------YAIDSDAALDLPSKPEKIAIVG 252
G Y+A+ ++I+ G F P PG YA+ S A + +++ IVG
Sbjct: 104 QGNAYTAKAVIIAAGVGAFEPRRIGAPGEREFEGRGVYYAVKSKAEF----QGKRVLIVG 159
Query: 253 GGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRDFVAEQMSLRGIEFHTEESPQAI 312
GG A+++A + + R + R E + + +E T + +
Sbjct: 160 GGDSAVDWALNLLDTARRITLIHR-RPQFRA-HEASVKELMKAHEEGRLEVLTPYELRRV 217
Query: 313 LKSTDGSLSV-----KTNKGTVDGFSHVMFATGRRPNT---KNLGLEKVGVKMTKNGAIE 364
+ + +T + V+ G N GL + I+
Sbjct: 218 -EGDERVRWAVVFHNQTQEELALEVDAVLILAGYITKLGPLANWGLA------LEKNKIK 270
Query: 365 VDEYSGTAVPSIWAVGDVTDR 385
VD T++P ++A GD+
Sbjct: 271 VDTTMATSIPGVYACGDIVTY 291
|
| >1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 Length = 310 | Back alignment and structure |
|---|
Score = 54.0 bits (131), Expect = 4e-08
Identities = 42/216 (19%), Positives = 78/216 (36%), Gaps = 49/216 (22%)
Query: 197 DPHTVDVD-GKLYSARHILISVGGRPFIPDIPGSE--------YAIDSDAALDLPSKPEK 247
H ++ G + AR I+++ G + ++PG + Y D L K ++
Sbjct: 90 GLHQIETASGAVLKARSIIVATGAKWRNMNVPGEDQYRTKGVTYCPHCDGPL---FKGKR 146
Query: 248 IAIVGGGYIALEFAGIF-SGLTSEVHVFIRQKKVLRGFDEDIRD-FVAEQ------MSLR 299
+A++GGG +E A I +G+ V + A+Q SL+
Sbjct: 147 VAVIGGGNSGVE-AAIDLAGIVEHVTLLEF------------APEMKADQVLQDKLRSLK 193
Query: 300 GIEFHTEESPQAILKSTDG--SLSVKTNKGT-------VDGFSHVMFATGRRPNTKNLGL 350
++ + L + ++ + + G + G PNT L
Sbjct: 194 NVDIILNAQTTEVKGDGSKVVGLEYR-DRVSGDIHNIELAG---IFVQIGLLPNTNWL-- 247
Query: 351 EKVGVKMTKNGAIEVDEYSGTAVPSIWAVGDVTDRI 386
+ V+ + G I +D T V ++A GD T
Sbjct: 248 -EGAVERNRMGEIIIDAKCETNVKGVFAAGDCTTVP 282
|
| >3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A* Length = 332 | Back alignment and structure |
|---|
Score = 53.4 bits (129), Expect = 7e-08
Identities = 36/207 (17%), Positives = 78/207 (37%), Gaps = 40/207 (19%)
Query: 200 TVDVDGKLYSARHILISVGGRPFIP---DIPGSE--------YAIDSDAALDLPSKPEKI 248
+ + + + ++ ++I+ G F P ++ +E Y +D ++
Sbjct: 102 KLVTNEETHYSKTVIITAGNGAFKPRKLELENAEQYEGKNLHYFVDDLQKF----AGRRV 157
Query: 249 AIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRDFVAEQMSLRGIEFHTEES 308
AI+GGG A+++A + + EV + I ++ R + + E + + T
Sbjct: 158 AILGGGDSAVDWALMLEPIAKEVSI-IHRRDKFRAHEHSV-----ENLHASKVNVLTPFV 211
Query: 309 PQAILKSTD-GSLSVKTNKG------TVDGFSHVMFATGRRPNT---KNLGLEKVGVKMT 358
P ++ L ++ KG +D ++ G + KN GL+
Sbjct: 212 PAELIGEDKIEQLVLEEVKGDRKEILEID---DLIVNYGFVSSLGPIKNWGLD------I 262
Query: 359 KNGAIEVDEYSGTAVPSIWAVGDVTDR 385
+ +I V T + +A GD+
Sbjct: 263 EKNSIVVKSTMETNIEGFFAAGDICTY 289
|
| >3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni} Length = 315 | Back alignment and structure |
|---|
Score = 52.9 bits (128), Expect = 9e-08
Identities = 36/159 (22%), Positives = 57/159 (35%), Gaps = 31/159 (19%)
Query: 244 KPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRD-FVAEQ-MSLRG- 300
K +++A++GGG ALE A + + S++++ R RD F A +
Sbjct: 146 KNKEVAVLGGGDTALEEALYLANICSKIYLIHR------------RDEFRAAPSTVEKVK 193
Query: 301 ----IEFHTEESPQAILKSTDGSLSVKTNKGT-------VDGFSHVMFATGRRPNTKNLG 349
IE T S + G VK V G + G + L
Sbjct: 194 KNEKIELITSASVDEVYGDKMGVAGVKVKLKDGSIRDLNVPG---IFTFVGLNVRNEILK 250
Query: 350 --LEKVGVKMTKNGAIEVDEYSGTAVPSIWAVGDVTDRI 386
K M + G + VD T+V ++A GD+
Sbjct: 251 QDDSKFLCNMEEGGQVSVDLKMQTSVAGLFAAGDLRKDA 289
|
| >2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A* Length = 311 | Back alignment and structure |
|---|
Score = 52.1 bits (126), Expect = 2e-07
Identities = 45/228 (19%), Positives = 73/228 (32%), Gaps = 68/228 (29%)
Query: 197 DPHTVDVD-GKLYSARHILISVGGRPFIPDIPGSEYAIDSDAALDLPS------------ 243
+ + GK + A+ ++I+ GG P + +
Sbjct: 89 SHFVILAEDGKTFEAKSVIIATGGSP--------KR-------TGIKGESEYWGKGVSTC 133
Query: 244 --------KPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRD-FVAE 294
K +++A++GGG A+E A + + +V++ R RD F
Sbjct: 134 ATCDGFFYKNKEVAVLGGGDTAVEEAIYLANICKKVYLIHR------------RDGFRCA 181
Query: 295 Q-MSLRG-----IEFHTEESPQAILKSTDG--SLSVKTNKG------TVDGFSHVMFATG 340
IEF T + I G SLS+K V G G
Sbjct: 182 PITLEHAKNNDKIEFLTPYVVEEIKGDASGVSSLSIKNTATNEKRELVVPG---FFIFVG 238
Query: 341 RRPNTKNLG--LEKVGVKMTKNGAIEVDEYSGTAVPSIWAVGDVTDRI 386
N L + K + G+I VD T V ++A GD+
Sbjct: 239 YDVNNAVLKQEDNSMLCKCDEYGSIVVDFSMKTNVQGLFAAGDIRIFA 286
|
| >3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum} Length = 360 | Back alignment and structure |
|---|
Score = 50.4 bits (121), Expect = 7e-07
Identities = 41/202 (20%), Positives = 78/202 (38%), Gaps = 39/202 (19%)
Query: 204 DGKLYSARHILISVGGRPFIP------------DIPGSEYAIDSDAALDLPSKPEKIAIV 251
G +Y +R +LI+ G F P YA+ S K +++ IV
Sbjct: 114 TGNVYRSRAVLIAAGLGAFEPRKLPQLGNIDHLTGSSVYYAVKSVEDF----KGKRVVIV 169
Query: 252 GGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRDFVAEQMSLRGIEFHTEESPQA 311
GGG AL++ + V + + + +G V + I+ + E +
Sbjct: 170 GGGDSALDWTVGLIKNAASVTL-VHRGHEFQG-HGKTAHEVERARANGTIDVYLETEVAS 227
Query: 312 ILKSTDGSLS---VKTNKGT-----VDGFSHVMFATGRRPNT---KNLGLEKVGVKMTKN 360
I + ++G L+ ++++ G+ D ++ G + N LE
Sbjct: 228 I-EESNGVLTRVHLRSSDGSKWTVEAD---RLLILIGFKSNLGPLARWDLE------LYE 277
Query: 361 GAIEVDEYSGTAVPSIWAVGDV 382
A+ VD + T+V ++A GD+
Sbjct: 278 NALVVDSHMKTSVDGLYAAGDI 299
|
| >2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans} Length = 325 | Back alignment and structure |
|---|
Score = 48.7 bits (117), Expect = 2e-06
Identities = 48/225 (21%), Positives = 80/225 (35%), Gaps = 71/225 (31%)
Query: 198 PHTVDVDGKLYSARHILISVGGRPFIPDIPGSEYAIDSDAALDLPS-------------- 243
P TV Y A+ ++++ G P L +P
Sbjct: 100 PFTVRGYNGEYRAKAVILATGADP--------RK-------LGIPGEDNFWGKGVSTCAT 144
Query: 244 ------KPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRD-FVAEQ- 295
K +K+ ++GGG A+E + EV V R RD A +
Sbjct: 145 CDGFFYKGKKVVVIGGGDAAVEEGMFLTKFADEVTVIHR------------RDTLRANKV 192
Query: 296 MSLRG-----IEFHTEESPQAILKSTDGSL------SVKTNKGT---VDGFSHVMFATGR 341
R ++F + + + I S+ ++KT + + DG V G
Sbjct: 193 AQARAFANPKMKFIWDTAVEEIQ--GADSVSGVKLRNLKTGEVSELATDG---VFIFIGH 247
Query: 342 RPNTKNLGLEKVGVKMTKNGAIEVDEYSGTAVPSIWAVGDVTDRI 386
PNT K V + +G ++V + T +P ++A GDV+D I
Sbjct: 248 VPNTA---FVKDTVSLRDDGYVDVRDEIYTNIPMLFAAGDVSDYI 289
|
| >1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A* Length = 333 | Back alignment and structure |
|---|
Score = 48.3 bits (116), Expect = 3e-06
Identities = 48/220 (21%), Positives = 82/220 (37%), Gaps = 49/220 (22%)
Query: 197 DPHTVDVDGKLYSARHILISVGGRPFIPDIPGSEYAIDS------------DAALDLPSK 244
P + D K A +++++G GS + D A + +
Sbjct: 100 KPFKLFTDSKAILADAVILAIGAVAKRLSFVGSGEVLGGFWNRGISACAVCDGAAPI-FR 158
Query: 245 PEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRD-FVAEQ-MSLRG-- 300
+ +A++GGG A+E A + S+V++ R RD F A + M R
Sbjct: 159 NKPLAVIGGGDSAMEEANFLTKYGSKVYIIHR------------RDAFRASKIMQQRALS 206
Query: 301 ---IEFHTEESPQAILKSTDGSL-------SVKTNKGT---VDGFSHVMFATGRRPNTKN 347
I+ S + + +V T + V G + FA G P TK
Sbjct: 207 NPKIDVIWNSSVVEAYGDGERDVLGGLKVKNVVTGDVSDLKVSG---LFFAIGHEPATK- 262
Query: 348 LGLEKVGVKMTKNGAIEVDEYS-GTAVPSIWAVGDVTDRI 386
GV++ +G + + T+VP ++A GDV D+
Sbjct: 263 --FLDGGVELDSDGYVVTKPGTTQTSVPGVFAAGDVQDKK 300
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 48.7 bits (115), Expect = 4e-06
Identities = 91/593 (15%), Positives = 164/593 (27%), Gaps = 198/593 (33%)
Query: 70 HYDFDLFTIGAGSGG---VRASRFAANFGASVAICELPFSTISSE-------TTGGVGGT 119
H DF+ V F NF + ++P S +S E + V GT
Sbjct: 6 HMDFETGEHQYQYKDILSVFEDAFVDNFDCK-DVQDMPKSILSKEEIDHIIMSKDAVSGT 64
Query: 120 CVLRGCVPKKLLVYASKFSHEFDESNGFGWKYGTEPQHDW-STLIANKNAELQRLTGIYK 178
L LL + +F E + + + I + + +T +Y
Sbjct: 65 LRLFWT----LLSKQEEMVQKFVEE-------VLRINYKFLMSPIKTEQRQPSMMTRMY- 112
Query: 179 NILINAGITLIEGRGKIVDPHTVDVDGKLYSARHILISVGGRPFIPDIPGSEYAIDSDAA 238
IE R ++ + D ++++ ++ R Y A
Sbjct: 113 ----------IEQRDRLYN------DNQVFAKYNV-----SRL-------QPYLKLRQAL 144
Query: 239 LDLPSKPEK-IAIVG-GGYIALEFAGIFSG---LTSEVHVFIRQKKVLRGFDEDI----- 288
L+L +P K + I G G SG + +V KV D I
Sbjct: 145 LEL--RPAKNVLIDGVLG----------SGKTWVALDV---CLSYKVQCKMDFKIFWLNL 189
Query: 289 ---------------------RDFVAEQMSLRGIEFHTEESPQA---ILKSTDG--SL-- 320
++ + I+ +LKS L
Sbjct: 190 KNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLV 249
Query: 321 --SVKTNKGTVDGFSH---VMFATGRRPNTKNLGLEKVGVKMTKNGAIEVDEYSGTAVP- 374
+V+ N + F+ ++ T + T + + T + I +D +S T P
Sbjct: 250 LLNVQ-NAKAWNAFNLSCKILLTTRFKQVT-----DFLSAATTTH--ISLDHHSMTLTPD 301
Query: 375 ------SIWAVGDVTD------RINLTPVALMEGGALAKTLFQAEPTKPDY--------- 413
+ D N P L ++ + D
Sbjct: 302 EVKSLLLKYLDCRPQDLPREVLTTN--PRRL----SIIAESIRDGLATWDNWKHVNCDKL 355
Query: 414 -SAVPSAVFSQPPIGQVGLSEEQAIQEYGDIDVFTANFR-PLKATLSGL--------PDR 463
+ + S++ P +E + + + + VF + P LS +
Sbjct: 356 TTIIESSLNVLEP------AEYR--KMFDRLSVFPPSAHIPTI-LLSLIWFDVIKSDVMV 406
Query: 464 IFMKLV---LCAKTNK--VLGLHMC-------GEDAPE----IVQGFAVAVKA---GLTK 504
+ KL L K K + + E+ IV + + L
Sbjct: 407 VVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIP 466
Query: 505 ADFD----ATVGVHPTAAEE----------FVTLRTPTRKIRKSPPSEGMTGP 543
D + +G H E F+ R +KIR + +G
Sbjct: 467 PYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGS 519
|
| >3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A* Length = 463 | Back alignment and structure |
|---|
Score = 47.8 bits (113), Expect = 6e-06
Identities = 24/100 (24%), Positives = 38/100 (38%), Gaps = 13/100 (13%)
Query: 190 EGRGKIVDPHTVDVDGKLYSARHILISVGGRPFIPDIPG-----------SEYAIDSDAA 238
+ V D + + + R +++S GG P IP + S+Y
Sbjct: 161 QVEALRVISRNADGEELVRTTRALVVSPGGTPRIPQVFRALKGDGRVFHHSQYLEHMAKQ 220
Query: 239 LDLPSKPEKIAIVGGGYIALE-FAGIFSGLT-SEVHVFIR 276
KP KIAI+GGG A E F + + + +R
Sbjct: 221 PCSSGKPMKIAIIGGGQSAAEAFIDLNDSYPSVQADMILR 260
|
| >1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 Length = 671 | Back alignment and structure |
|---|
Score = 48.1 bits (115), Expect = 6e-06
Identities = 52/310 (16%), Positives = 88/310 (28%), Gaps = 100/310 (32%)
Query: 78 IGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKF 137
+GAG G+ + AA G V + + + GG A +
Sbjct: 379 VGAGPAGLAFAINAAARGHQVTLFD------AHSEIGG--------------QFNIAKQI 418
Query: 138 SHEFDESNGFGWKYGTEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIEGRGKIVD 197
+ ++ + ++ G+TL
Sbjct: 419 PG----------------KEEFYETLRYYRRMIEVT-----------GVTLKLN------ 445
Query: 198 PHTVDVDGKLYSARHILISVGGRPFIPDIPGSEYA--IDSDAALDLPSKP-EKIAIVGGG 254
HTV D +L + +++ G P P I G ++ + L + K+AI+G G
Sbjct: 446 -HTVTAD-QLQAFDETILASGIVPRTPPIDGIDHPKVLSYLDVLRDKAPVGNKVAIIGCG 503
Query: 255 YIALEFA------------------------------GIFSGLTSEVHVFIRQ------- 277
I + A G S ++ RQ
Sbjct: 504 GIGFDTAMYLSQPGESTSQNIAGFCNEWGIDSSLQQAGGLSPQGMQIPRSPRQIVMLQRK 563
Query: 278 -KKVLRGFDEDIRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTNKGTVD-GFSHV 335
K +G + + RG++ S Q I D L V N T +V
Sbjct: 564 ASKPGQGLGKTTGWIHRTTLLSRGVKMIPGVSYQKI---DDDGLHVVINGETQVLAVDNV 620
Query: 336 MFATGRRPNT 345
+ G+ PN
Sbjct: 621 VICAGQEPNR 630
|
| >2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis} Length = 335 | Back alignment and structure |
|---|
Score = 46.4 bits (111), Expect = 1e-05
Identities = 39/157 (24%), Positives = 62/157 (39%), Gaps = 37/157 (23%)
Query: 247 KIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRD-FVAEQ-MSLRG---- 300
IA++GGG A+E A + V + R RD F A + M R
Sbjct: 157 DIAVIGGGDSAMEEATFLTRFARSVTLVHR------------RDEFRASKIMLDRARNND 204
Query: 301 -IEFHTEESPQAILKSTDGSLS------VKTNKGT---VDGFSHVMFATGRRPNTKNLGL 350
I F T + A+ D +++ T T V G V A G P + L
Sbjct: 205 KIRFLTNHTVVAVD--GDTTVTGLRVRDTNTGAETTLPVTG---VFVAIGHEPRSG---L 256
Query: 351 EKVGVKMTKNGAIEVDEYS-GTAVPSIWAVGDVTDRI 386
+ + + +G + V + T++P ++A GD+ DR
Sbjct: 257 VREAIDVDPDGYVLVQGRTTSTSLPGVFAAGDLVDRT 293
|
| >3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A* Length = 409 | Back alignment and structure |
|---|
Score = 46.2 bits (110), Expect = 2e-05
Identities = 42/278 (15%), Positives = 68/278 (24%), Gaps = 63/278 (22%)
Query: 159 WSTLIANKNAELQRLTGIYKNILINAGITLIEGRGKIVDP--HTVDVDGKLYSARHI--- 213
+A ++ L L GI EG + +D V S
Sbjct: 44 ALPHVAIGVRDVDELKVDLSEALPEKGIQFQEGTVEKIDAKSSMVYYTKPDGSMAEEEYD 103
Query: 214 --LISVGGRPFIPDIPG-SEYAI---DSDAALDL------------------------PS 243
++ +G + G +Y + + A L P
Sbjct: 104 YVIVGIGAHLATELVKGWDKYGYSVCEPEFATKLREKLESFQGGNIAIGSGPFYQGHNPK 163
Query: 244 KPEKIAIVGGGYI-----ALEFAGIF------SGLTSEVHV-FIRQKKVLRGFDEDIRDF 291
V E + + G+ +VHV + L + R
Sbjct: 164 PKVPENFVPNADSACEGPVFEMSLMLHGYFKKKGMLDKVHVTVFSPGEYLSDLSPNSRKA 223
Query: 292 VAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNT--KNLG 349
VA + GI+ +K + KG + N KN
Sbjct: 224 VASIYNQLGIKLVH----NFKIKEIREH-EIVDEKGNTIPADITILLPPYTGNPALKNST 278
Query: 350 LEKVGVKMTKNGAIEVDEYSGTAVPS---IWAVGDVTD 384
+ V G I D ++AVGD
Sbjct: 279 PDLV----DDGGFIPTDLN--MVSIKYDNVYAVGDANS 310
|
| >3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A* Length = 338 | Back alignment and structure |
|---|
Score = 44.9 bits (107), Expect = 4e-05
Identities = 38/156 (24%), Positives = 55/156 (35%), Gaps = 34/156 (21%)
Query: 247 KIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRD-FVAEQ-MSLR----- 299
+A++GGG A E A + S+V + +R +D A M R
Sbjct: 175 PLAVIGGGDSACEEAQFLTKYGSKVFMLVR------------KDHLRASTIMQKRAEKNE 222
Query: 300 GIEFHTEESPQAILKSTDG--SLSVKTNKG------TVDGFSHVMFATGRRPNTKNLGLE 351
IE +L +K K V G + +A G P TK +
Sbjct: 223 KIEILYNTVALEAKGDGKLLNALRIKNTKKNEETDLPVSG---LFYAIGHTPATK---IV 276
Query: 352 KVGVKMTKNGAIEVDEYS-GTAVPSIWAVGDVTDRI 386
V + G I+ S T+VP +A GDV D
Sbjct: 277 AGQVDTDEAGYIKTVPGSSLTSVPGFFAAGDVQDSK 312
|
| >1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A* Length = 729 | Back alignment and structure |
|---|
Score = 45.0 bits (107), Expect = 6e-05
Identities = 53/385 (13%), Positives = 102/385 (26%), Gaps = 97/385 (25%)
Query: 78 IGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKF 137
+GAG G A+R G +V + + ++E GG L +
Sbjct: 395 VGAGPSGSEAARVLMESGYTVHLTD------TAEKIGG--------------HLNQVAAL 434
Query: 138 SHEFDESNGFGWKYGTEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIEGRGKIVD 197
+WS + ++ +L K + G +
Sbjct: 435 PG----------------LGEWSYHRDYRETQITKLLKKNKESQLALGQK-------PMT 471
Query: 198 PHTVDVDGKLYSARHILISVGGRPFIPD--------IPGSEYA----IDSDAALDLPSKP 245
V Y A ++I+ G R IPG++ + + + +D K
Sbjct: 472 ADDV----LQYGADKVIIATGARWNTDGTNCLTHDPIPGADASLPDQLTPEQVMDGKKKI 527
Query: 246 -EKIAIVGGG--YIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRDFVAEQMSLRGIE 302
+++ I+ ++A A + EV + + ++ +E
Sbjct: 528 GKRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVHLANYMHFTLEYPNMMRRLHELHVE 587
Query: 303 FHTEESPQAI------------------LKSTDGSLSVKTNKGTVDGFSHVMFATGRRPN 344
+ I + S F ++ TGR
Sbjct: 588 ELGDHFCSRIEPGRMEIYNIWGDGSKRTYRGPGVSPRDANTSHRWIEFDSLVLVTGRHSE 647
Query: 345 TKNLGLEKVGVKMTKNGAIEVDEYSGTAVPSI---WAVGDVTDRINLTPVALMEGGALAK 401
L K E E + I A + D A G +A+
Sbjct: 648 C---TL----WNELKARESEWAENDIKGIYLIGDAEAPRLIAD-------ATFTGHRVAR 693
Query: 402 TLFQAEPTKPDYSAVPSAVFSQPPI 426
+ +A P + + P +
Sbjct: 694 EIEEANPQIAIPYKRETIAWGTPHM 718
|
| >3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex} Length = 690 | Back alignment and structure |
|---|
Score = 43.8 bits (104), Expect = 1e-04
Identities = 38/286 (13%), Positives = 76/286 (26%), Gaps = 74/286 (25%)
Query: 78 IGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKF 137
+GAG G+ A+R G V + E + GG + S
Sbjct: 397 VGAGPSGLEAARALGVRGYDVVLAE------AGRDLGG--------------RVTQESAL 436
Query: 138 SHEFDESNGFGWKYGTEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIEGRGKIVD 197
W + + A L L + I
Sbjct: 437 PG----------------LSAWGRVKEYREAVLAELPNV--EIYRE-------------- 464
Query: 198 PHTVDVDG-KLYSARHILISVGGRPFIPD--------IPGSEYA--IDSDAALDLPSKP- 245
+ D + H++ + G +P +E + D
Sbjct: 465 -SPMTGDDIVEFGFEHVITATGATWRTDGVARFHTTALPIAEGMQVLGPDDLFAGRLPDG 523
Query: 246 EKIAIVGGG--YIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIR-DFVAEQMSLRGIE 302
+K+ + Y+ A + + EV + +V + + + ++ G+
Sbjct: 524 KKVVVYDDDHYYLGGVVAELLAQKGYEVSIVTPGAQVSSWTNNTFEVNRIQRRLIENGVA 583
Query: 303 FHTEESPQAILKSTDGSLSVKTNKG---TVDGFSHVMFATGRRPNT 345
T+ + A+ G ++V+ V+ T R P
Sbjct: 584 RVTDHAVVAV---GAGGVTVRDTYASIERELECDAVVMVTARLPRE 626
|
| >1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A* Length = 1025 | Back alignment and structure |
|---|
Score = 43.3 bits (102), Expect = 2e-04
Identities = 22/114 (19%), Positives = 40/114 (35%), Gaps = 18/114 (15%)
Query: 300 GIEFHTEESPQAILKSTDGSLS-VKTNKGTVDG---------------FSHVMFATGRRP 343
EF SP+ ++ G + V+ + D V+ A G
Sbjct: 384 KCEFLPFLSPRKVI-VKGGRIVAVQFVRTEQDETGKWNEDEDQIVHLKADVVISAFGSVL 442
Query: 344 NTKNLGLEKVGVKMTKNGAIEVDEYSG-TAVPSIWAVGDVTDRINLTPVALMEG 396
+ +K + EVD + T+ P ++A GD+ N T ++ +G
Sbjct: 443 RDPKVKEALSPIKFNRWDLPEVDPETMQTSEPWVFAGGDIVGMANTTVESVNDG 496
|
| >1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A* Length = 320 | Back alignment and structure |
|---|
Score = 42.5 bits (101), Expect = 2e-04
Identities = 50/225 (22%), Positives = 89/225 (39%), Gaps = 60/225 (26%)
Query: 197 DPHTVDVDGKLYSARHILISVGGRPFIPDIPGSEYAIDSDAALDLPS------------- 243
P ++ D Y+ ++I+ G Y L LPS
Sbjct: 92 RPFRLNGDNGEYTCDALIIATGASA--------RY-------LGLPSEEAFKGRGVSACA 136
Query: 244 -------KPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDI-RDFVAEQ 295
+ +K+A++GGG A+E A S + SEVH+ R+ R E I + ++
Sbjct: 137 TSDGFFYRNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDG-FRA--EKILIKRLMDK 193
Query: 296 MSLRGIEFHTEESPQAILKSTDG--SLSVKTNKG-------TVDGFSHVMFATGRRPNTK 346
+ I HT + + + G + ++ + V G + A G PNT
Sbjct: 194 VENGNIILHTNRTLEEVTGDQMGVTGVRLRDTQNSDNIESLDVAG---LFVAIGHSPNTA 250
Query: 347 NLGLEKVGVKMTKNGAIEV-----DEYSGTAVPSIWAVGDVTDRI 386
+ + +++ +NG I+V + T++P ++A GDV D I
Sbjct: 251 ---IFEGQLEL-ENGYIKVQSGIHGNATQTSIPGVFAAGDVMDHI 291
|
| >4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia} Length = 357 | Back alignment and structure |
|---|
Score = 42.0 bits (99), Expect = 3e-04
Identities = 41/222 (18%), Positives = 71/222 (31%), Gaps = 50/222 (22%)
Query: 199 HTVDVDGKLYSARHILISVG--GRPFIPDIPG-----------SEYAIDSDAALDLPSKP 245
V DG+ + AR ++ + G G + P+ G + Y
Sbjct: 110 RVVARDGRQWLARAVISATGTWGEAYTPEYQGLESFAGIQLHSAHY----STPAPFAGM- 164
Query: 246 EKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVL--RGFDEDIRDFVAEQMSLRGIEF 303
++AI+GGG + S + + + L + + E+ +
Sbjct: 165 -RVAIIGGGNSGAQILAEVSTVAETTWITQHEPAFLADDVDGRVLFERATERWKAQQEGR 223
Query: 304 ----------HTEESPQAILKSTDGSL------------SVKTNKGTVDGFSHVMFATGR 341
P + G L ++ GT F V++ TG
Sbjct: 224 EPDLPPGGFGDIVMVPPVLDARARGVLAAVPPPARFSPTGMQWADGTERAFDAVIWCTGF 283
Query: 342 RPNTKNLGLEKVGVKMTKNGAIEVDEYSGTAV---PSIWAVG 380
RP +L + +T G +EVD SG PS+W +G
Sbjct: 284 RPALSHLKGLDL---VTPQGQVEVD-GSGLRALAVPSVWLLG 321
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 551 | |||
| 4b1b_A | 542 | TRXR, thioredoxin reductase; oxidoreductase, FAD, | 100.0 | |
| 4dna_A | 463 | Probable glutathione reductase; structural genomic | 100.0 | |
| 2wpf_A | 495 | Trypanothione reductase; oxidoreductase, trypanoso | 100.0 | |
| 3o0h_A | 484 | Glutathione reductase; ssgcid, structur genomics, | 100.0 | |
| 1ges_A | 450 | Glutathione reductase; oxidoreductase(flavoenzyme) | 100.0 | |
| 3dk9_A | 478 | Grase, GR, glutathione reductase; flavoenzyme, nic | 100.0 | |
| 1fec_A | 490 | Trypanothione reductase; redox-active center, oxid | 100.0 | |
| 2r9z_A | 463 | Glutathione amide reductase; NAD, FAD, substrate s | 100.0 | |
| 3dgz_A | 488 | Thioredoxin reductase 2; oxidoreductase, rossmann, | 100.0 | |
| 3ic9_A | 492 | Dihydrolipoamide dehydrogenase; APC62701, colwelli | 100.0 | |
| 3dgh_A | 483 | TRXR-1, thioredoxin reductase 1, mitochondrial; ox | 100.0 | |
| 3qfa_A | 519 | Thioredoxin reductase 1, cytoplasmic; protein-prot | 100.0 | |
| 2hqm_A | 479 | GR, grase, glutathione reductase; glutathione redu | 100.0 | |
| 1onf_A | 500 | GR, grase, glutathione reductase; oxidoreductase; | 100.0 | |
| 3urh_A | 491 | Dihydrolipoyl dehydrogenase; PSI-biology, structur | 100.0 | |
| 3l8k_A | 466 | Dihydrolipoyl dehydrogenase; redox-active center, | 100.0 | |
| 3lad_A | 476 | Dihydrolipoamide dehydrogenase; oxidoreductase; HE | 100.0 | |
| 1ojt_A | 482 | Surface protein; redox-active center, glycolysis, | 100.0 | |
| 2eq6_A | 464 | Pyruvate dehydrogenase complex, dihydrolipoamide d | 100.0 | |
| 2qae_A | 468 | Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin | 100.0 | |
| 1ebd_A | 455 | E3BD, dihydrolipoamide dehydrogenase; redox-active | 100.0 | |
| 1xdi_A | 499 | RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun | 100.0 | |
| 1zmd_A | 474 | Dihydrolipoyl dehydrogenase; lipoamide dehydrogena | 100.0 | |
| 2a8x_A | 464 | Dihydrolipoyl dehydrogenase, E3 component of alpha | 100.0 | |
| 1dxl_A | 470 | Dihydrolipoamide dehydrogenase; oxidoreductase, mu | 100.0 | |
| 1zk7_A | 467 | HGII, reductase, mercuric reductase; mercuric ION | 100.0 | |
| 1lvl_A | 458 | Dihydrolipoamide dehydrogenase; oxidoreductase; HE | 100.0 | |
| 1mo9_A | 523 | ORF3; nucleotide binding motifs, nucleotide bindin | 100.0 | |
| 2yqu_A | 455 | 2-oxoglutarate dehydrogenase E3 component; lipoami | 100.0 | |
| 1v59_A | 478 | Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog | 100.0 | |
| 2x8g_A | 598 | Thioredoxin glutathione reductase; redox-active ce | 100.0 | |
| 4eqs_A | 437 | Coenzyme A disulfide reductase; oxidoreductase; HE | 100.0 | |
| 3oc4_A | 452 | Oxidoreductase, pyridine nucleotide-disulfide FAM; | 100.0 | |
| 3kd9_A | 449 | Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o | 100.0 | |
| 2cdu_A | 452 | NADPH oxidase; flavoenzyme, oxidoreductase; HET: F | 100.0 | |
| 3iwa_A | 472 | FAD-dependent pyridine nucleotide-disulphide oxido | 100.0 | |
| 2bc0_A | 490 | NADH oxidase; flavoprotein, pyridine nucleotide di | 100.0 | |
| 1nhp_A | 447 | NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA | 100.0 | |
| 3cgb_A | 480 | Pyridine nucleotide-disulfide oxidoreductase, CLA; | 100.0 | |
| 3ics_A | 588 | Coenzyme A-disulfide reductase; pyridine nucleotid | 100.0 | |
| 3ntd_A | 565 | FAD-dependent pyridine nucleotide-disulphide oxido | 100.0 | |
| 2v3a_A | 384 | Rubredoxin reductase; alkane degradation, NADH oxi | 100.0 | |
| 3klj_A | 385 | NAD(FAD)-dependent dehydrogenase, NIRB-family (N- | 100.0 | |
| 1xhc_A | 367 | NADH oxidase /nitrite reductase; southe collaborat | 100.0 | |
| 1q1r_A | 431 | Putidaredoxin reductase; glutathione reductase fol | 100.0 | |
| 2gqw_A | 408 | Ferredoxin reductase; flavoprotein, oxidoreductase | 100.0 | |
| 3lxd_A | 415 | FAD-dependent pyridine nucleotide-disulphide oxido | 100.0 | |
| 3ef6_A | 410 | Toluene 1,2-dioxygenase system ferredoxin--NAD(+) | 100.0 | |
| 3fg2_P | 404 | Putative rubredoxin reductase; ferredoxin reductas | 100.0 | |
| 4gcm_A | 312 | TRXR, thioredoxin reductase; FAD/NAD-linked reduct | 100.0 | |
| 4a5l_A | 314 | Thioredoxin reductase; oxidoreductase, redox metab | 100.0 | |
| 1m6i_A | 493 | Programmed cell death protein 8; apoptosis, AIF, o | 100.0 | |
| 2q7v_A | 325 | Thioredoxin reductase; rossman fold, FAD, flavopro | 100.0 | |
| 2q0l_A | 311 | TRXR, thioredoxin reductase; bacterial thiredoxin | 100.0 | |
| 3cty_A | 319 | Thioredoxin reductase; FAD, oxidoreductase, flavin | 100.0 | |
| 3r9u_A | 315 | Thioredoxin reductase; structural genomics, center | 100.0 | |
| 4fk1_A | 304 | Putative thioredoxin reductase; structural genomic | 100.0 | |
| 3f8d_A | 323 | Thioredoxin reductase (TRXB-3); redox protein, nuc | 100.0 | |
| 1trb_A | 320 | Thioredoxin reductase; oxidoreductase(flavoenzyme) | 100.0 | |
| 1fl2_A | 310 | Alkyl hydroperoxide reductase subunit F; reactive | 100.0 | |
| 2zbw_A | 335 | Thioredoxin reductase; redox protein, oxidoreducta | 100.0 | |
| 3fbs_A | 297 | Oxidoreductase; structural genomics, PSI2, MCSG, p | 100.0 | |
| 2a87_A | 335 | TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL | 100.0 | |
| 3ab1_A | 360 | Ferredoxin--NADP reductase; oxidoreductase, electr | 100.0 | |
| 3itj_A | 338 | Thioredoxin reductase 1; disulfide B flavoprotein, | 100.0 | |
| 3lzw_A | 332 | Ferredoxin--NADP reductase 2; ferredoxin reductase | 100.0 | |
| 4g6h_A | 502 | Rotenone-insensitive NADH-ubiquinone oxidoreducta | 100.0 | |
| 1vdc_A | 333 | NTR, NADPH dependent thioredoxin reductase; hypoth | 100.0 | |
| 1hyu_A | 521 | AHPF, alkyl hydroperoxide reductase subunit F; thi | 100.0 | |
| 3d1c_A | 369 | Flavin-containing putative monooxygenase; NP_37310 | 100.0 | |
| 4a9w_A | 357 | Monooxygenase; baeyer-villiger, FAD, oxidoreductas | 100.0 | |
| 2vdc_G | 456 | Glutamate synthase [NADPH] small chain; oxidoreduc | 100.0 | |
| 3sx6_A | 437 | Sulfide-quinone reductase, putative; sulfide:quino | 100.0 | |
| 1gte_A | 1025 | Dihydropyrimidine dehydrogenase; electron transfer | 100.0 | |
| 2xve_A | 464 | Flavin-containing monooxygenase; oxidoreductase; H | 99.98 | |
| 3h8l_A | 409 | NADH oxidase; membrane protein, complete form, ros | 99.98 | |
| 3vrd_B | 401 | FCCB subunit, flavocytochrome C flavin subunit; su | 99.97 | |
| 1lqt_A | 456 | FPRA; NADP+ derivative, oxidoreductase, structural | 99.97 | |
| 1cjc_A | 460 | Protein (adrenodoxin reductase); flavoenzyme, MAD | 99.97 | |
| 2gv8_A | 447 | Monooxygenase; FMO, FAD, NADPH, cofactor complex, | 99.97 | |
| 3h28_A | 430 | Sulfide-quinone reductase; monotopic membrane prot | 99.97 | |
| 3hyw_A | 430 | Sulfide-quinone reductase; monotopic membrane prot | 99.97 | |
| 1o94_A | 729 | Tmadh, trimethylamine dehydrogenase; electron tran | 99.97 | |
| 3k30_A | 690 | Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi | 99.96 | |
| 2gag_A | 965 | Heterotetrameric sarcosine oxidase alpha-subunit; | 99.96 | |
| 3s5w_A | 463 | L-ornithine 5-monooxygenase; class B flavin depend | 99.96 | |
| 1ps9_A | 671 | 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel | 99.96 | |
| 3gwf_A | 540 | Cyclohexanone monooxygenase; flavoprotein biocatal | 99.95 | |
| 1y56_A | 493 | Hypothetical protein PH1363; dehydrogenase, protei | 99.95 | |
| 3uox_A | 545 | Otemo; baeyer-villiger monooxygenase, oxidoreducta | 99.94 | |
| 4ap3_A | 549 | Steroid monooxygenase; oxidoreductase, baeyer-vill | 99.93 | |
| 1w4x_A | 542 | Phenylacetone monooxygenase; baeyer-villiger, FAD; | 99.91 | |
| 2ywl_A | 180 | Thioredoxin reductase related protein; uncharacter | 99.9 | |
| 2e5v_A | 472 | L-aspartate oxidase; archaea, oxidoreductase; HET: | 99.81 | |
| 4b63_A | 501 | L-ornithine N5 monooxygenase; oxidoreductase, side | 99.79 | |
| 3fpz_A | 326 | Thiazole biosynthetic enzyme; FAD, mitochondrion, | 99.68 | |
| 2gqf_A | 401 | Hypothetical protein HI0933; structural genomics, | 99.67 | |
| 2cul_A | 232 | Glucose-inhibited division protein A-related PROT | 99.62 | |
| 3k7m_X | 431 | 6-hydroxy-L-nicotine oxidase; enantiomeric substra | 99.6 | |
| 3ces_A | 651 | MNMG, tRNA uridine 5-carboxymethylaminomethyl modi | 99.46 | |
| 2zxi_A | 637 | TRNA uridine 5-carboxymethylaminomethyl modificat | 99.33 | |
| 1rp0_A | 284 | ARA6, thiazole biosynthetic enzyme; protein ligand | 99.27 | |
| 3dme_A | 369 | Conserved exported protein; structural genomics, P | 99.24 | |
| 3v76_A | 417 | Flavoprotein; structural genomics, PSI-biology, NE | 99.16 | |
| 1ryi_A | 382 | Glycine oxidase; flavoprotein, protein-inhibitor c | 99.07 | |
| 1kf6_A | 602 | Fumarate reductase flavoprotein; respiration, fuma | 99.06 | |
| 3nlc_A | 549 | Uncharacterized protein VP0956; FAD-binding protei | 99.05 | |
| 1y56_B | 382 | Sarcosine oxidase; dehydrogenase, protein-protein | 99.05 | |
| 2gf3_A | 389 | MSOX, monomeric sarcosine oxidase; flavoprotein ox | 99.05 | |
| 3ps9_A | 676 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 99.04 | |
| 1chu_A | 540 | Protein (L-aspartate oxidase); flavoenzyme, NAD bi | 99.03 | |
| 3pvc_A | 689 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 99.03 | |
| 2gag_B | 405 | Heterotetrameric sarcosine oxidase beta-subunit; f | 99.02 | |
| 2oln_A | 397 | NIKD protein; flavoprotein, rossmann fold, oxidore | 99.02 | |
| 3dje_A | 438 | Fructosyl amine: oxygen oxidoreductase; fructosyl- | 99.0 | |
| 3cp8_A | 641 | TRNA uridine 5-carboxymethylaminomethyl modificati | 98.99 | |
| 3nix_A | 421 | Flavoprotein/dehydrogenase; structural genomics, P | 98.97 | |
| 2i0z_A | 447 | NAD(FAD)-utilizing dehydrogenases; structural geno | 98.97 | |
| 2uzz_A | 372 | N-methyl-L-tryptophan oxidase; N-methyltryptophan | 98.91 | |
| 4dgk_A | 501 | Phytoene dehydrogenase; the FAD/NAD(P)-binding ros | 98.89 | |
| 3i3l_A | 591 | Alkylhalidase CMLS; flavin-dependent halogenase, c | 98.84 | |
| 3gyx_A | 662 | Adenylylsulfate reductase; oxidoreductase; HET: FA | 98.83 | |
| 3cgv_A | 397 | Geranylgeranyl reductase related protein; NP_39399 | 98.82 | |
| 3axb_A | 448 | Putative oxidoreductase; dinucleotide-binding fold | 98.82 | |
| 2cul_A | 232 | Glucose-inhibited division protein A-related PROT | 98.82 | |
| 1pj5_A | 830 | N,N-dimethylglycine oxidase; channelling, FAD bind | 98.8 | |
| 3ka7_A | 425 | Oxidoreductase; structural genomics, PSI-2, protei | 98.8 | |
| 3nyc_A | 381 | D-arginine dehydrogenase; FAD, imino-arginine, oxi | 98.78 | |
| 4at0_A | 510 | 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidore | 98.77 | |
| 3rp8_A | 407 | Flavoprotein monooxygenase; FAD-binding protein, o | 98.76 | |
| 1qo8_A | 566 | Flavocytochrome C3 fumarate reductase; oxidoreduct | 98.76 | |
| 1s3e_A | 520 | Amine oxidase [flavin-containing] B; human monoami | 98.76 | |
| 3nrn_A | 421 | Uncharacterized protein PF1083; alpha-beta protein | 98.75 | |
| 2bry_A | 497 | NEDD9 interacting protein with calponin homology a | 98.74 | |
| 4gut_A | 776 | Lysine-specific histone demethylase 1B; histone de | 98.74 | |
| 3oz2_A | 397 | Digeranylgeranylglycerophospholipid reductase; str | 98.74 | |
| 1y0p_A | 571 | Fumarate reductase flavoprotein subunit; flavocyto | 98.73 | |
| 4a9w_A | 357 | Monooxygenase; baeyer-villiger, FAD, oxidoreductas | 98.72 | |
| 2ywl_A | 180 | Thioredoxin reductase related protein; uncharacter | 98.71 | |
| 1rp0_A | 284 | ARA6, thiazole biosynthetic enzyme; protein ligand | 98.69 | |
| 3e1t_A | 512 | Halogenase; flavoprotein; HET: FAD; 2.05A {Chondro | 98.66 | |
| 3da1_A | 561 | Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9 | 98.66 | |
| 3qj4_A | 342 | Renalase; FAD/NAD(P)-binding rossmann fold superfa | 98.65 | |
| 2gmh_A | 584 | Electron transfer flavoprotein-ubiquinone oxidored | 98.62 | |
| 3jsk_A | 344 | Cypbp37 protein; octameric thiazole synthase, bios | 98.62 | |
| 1d4d_A | 572 | Flavocytochrome C fumarate reductase; oxidoreducta | 98.61 | |
| 2bry_A | 497 | NEDD9 interacting protein with calponin homology a | 98.61 | |
| 3lzw_A | 332 | Ferredoxin--NADP reductase 2; ferredoxin reductase | 98.6 | |
| 2wdq_A | 588 | Succinate dehydrogenase flavoprotein subunit; succ | 98.6 | |
| 3nks_A | 477 | Protoporphyrinogen oxidase; FAD containing protein | 98.59 | |
| 3kkj_A | 336 | Amine oxidase, flavin-containing; oxidoreductase, | 98.59 | |
| 3f8d_A | 323 | Thioredoxin reductase (TRXB-3); redox protein, nuc | 98.58 | |
| 2vvm_A | 495 | Monoamine oxidase N; FAD, peroxisome, flavoprotein | 98.58 | |
| 3fmw_A | 570 | Oxygenase; mithramycin, baeyer-villiger, flavin bi | 98.57 | |
| 2qa1_A | 500 | PGAE, polyketide oxygenase PGAE; FAD, angucycline, | 98.56 | |
| 3p1w_A | 475 | Rabgdi protein; GDI RAB, malaria, structural genom | 98.55 | |
| 2e4g_A | 550 | Tryptophan halogenase; flavin-binding, rebeccamyci | 98.55 | |
| 2zbw_A | 335 | Thioredoxin reductase; redox protein, oxidoreducta | 98.55 | |
| 3ab1_A | 360 | Ferredoxin--NADP reductase; oxidoreductase, electr | 98.54 | |
| 2qa2_A | 499 | CABE, polyketide oxygenase CABE; FAD, angucycline, | 98.54 | |
| 3c96_A | 410 | Flavin-containing monooxygenase; FAD, oxidoreducta | 98.52 | |
| 3fbs_A | 297 | Oxidoreductase; structural genomics, PSI2, MCSG, p | 98.51 | |
| 3i6d_A | 470 | Protoporphyrinogen oxidase; protein-inhibitor comp | 98.5 | |
| 3itj_A | 338 | Thioredoxin reductase 1; disulfide B flavoprotein, | 98.5 | |
| 2q0l_A | 311 | TRXR, thioredoxin reductase; bacterial thiredoxin | 98.49 | |
| 3c4n_A | 405 | Uncharacterized protein DR_0571; alpha-beta protei | 98.49 | |
| 2gjc_A | 326 | Thiazole biosynthetic enzyme, mitochondrial; gluta | 98.47 | |
| 2aqj_A | 538 | Tryptophan halogenase, pRNA; flavin-dependent halo | 98.46 | |
| 2h88_A | 621 | Succinate dehydrogenase flavoprotein subunit; comp | 98.45 | |
| 2gqf_A | 401 | Hypothetical protein HI0933; structural genomics, | 98.45 | |
| 3klj_A | 385 | NAD(FAD)-dependent dehydrogenase, NIRB-family (N- | 98.44 | |
| 3alj_A | 379 | 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; | 98.44 | |
| 2qcu_A | 501 | Aerobic glycerol-3-phosphate dehydrogenase; glycer | 98.43 | |
| 1fl2_A | 310 | Alkyl hydroperoxide reductase subunit F; reactive | 98.41 | |
| 3d1c_A | 369 | Flavin-containing putative monooxygenase; NP_37310 | 98.41 | |
| 3alj_A | 379 | 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; | 98.4 | |
| 2q7v_A | 325 | Thioredoxin reductase; rossman fold, FAD, flavopro | 98.39 | |
| 1vdc_A | 333 | NTR, NADPH dependent thioredoxin reductase; hypoth | 98.39 | |
| 2pyx_A | 526 | Tryptophan halogenase; structural genomics, JOI fo | 98.39 | |
| 2x3n_A | 399 | Probable FAD-dependent monooxygenase; oxidoreducta | 98.38 | |
| 3sx6_A | 437 | Sulfide-quinone reductase, putative; sulfide:quino | 98.37 | |
| 2weu_A | 511 | Tryptophan 5-halogenase; regioselectivity, antifun | 98.37 | |
| 4fk1_A | 304 | Putative thioredoxin reductase; structural genomic | 98.36 | |
| 4ap3_A | 549 | Steroid monooxygenase; oxidoreductase, baeyer-vill | 98.35 | |
| 2bs2_A | 660 | Quinol-fumarate reductase flavoprotein subunit A; | 98.35 | |
| 3gwf_A | 540 | Cyclohexanone monooxygenase; flavoprotein biocatal | 98.35 | |
| 3hyw_A | 430 | Sulfide-quinone reductase; monotopic membrane prot | 98.34 | |
| 2gv8_A | 447 | Monooxygenase; FMO, FAD, NADPH, cofactor complex, | 98.34 | |
| 2x3n_A | 399 | Probable FAD-dependent monooxygenase; oxidoreducta | 98.3 | |
| 2rgh_A | 571 | Alpha-glycerophosphate oxidase; flavoprotein oxida | 98.3 | |
| 1jnr_A | 643 | Adenylylsulfate reductase; oxidoreductase; HET: FA | 98.3 | |
| 3cty_A | 319 | Thioredoxin reductase; FAD, oxidoreductase, flavin | 98.29 | |
| 3atr_A | 453 | Conserved archaeal protein; saturating double bond | 98.28 | |
| 1trb_A | 320 | Thioredoxin reductase; oxidoreductase(flavoenzyme) | 98.27 | |
| 1yvv_A | 336 | Amine oxidase, flavin-containing; oxidoreductase, | 98.27 | |
| 3h8l_A | 409 | NADH oxidase; membrane protein, complete form, ros | 98.27 | |
| 2vou_A | 397 | 2,6-dihydroxypyridine hydroxylase; oxidoreductase, | 98.27 | |
| 1q1r_A | 431 | Putidaredoxin reductase; glutathione reductase fol | 98.27 | |
| 3ihg_A | 535 | RDME; flavoenzyme, anthracycline, polyketide biosy | 98.26 | |
| 3r9u_A | 315 | Thioredoxin reductase; structural genomics, center | 98.26 | |
| 2xdo_A | 398 | TETX2 protein; tetracycline degradation, tigecycli | 98.26 | |
| 2xve_A | 464 | Flavin-containing monooxygenase; oxidoreductase; H | 98.26 | |
| 3ef6_A | 410 | Toluene 1,2-dioxygenase system ferredoxin--NAD(+) | 98.26 | |
| 3h28_A | 430 | Sulfide-quinone reductase; monotopic membrane prot | 98.26 | |
| 2dkh_A | 639 | 3-hydroxybenzoate hydroxylase; flavoprotein, monoo | 98.25 | |
| 1hyu_A | 521 | AHPF, alkyl hydroperoxide reductase subunit F; thi | 98.25 | |
| 2r0c_A | 549 | REBC; flavin adenine dinucleotide, monooxygenase, | 98.23 | |
| 2a87_A | 335 | TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL | 98.23 | |
| 3vrd_B | 401 | FCCB subunit, flavocytochrome C flavin subunit; su | 98.23 | |
| 3fg2_P | 404 | Putative rubredoxin reductase; ferredoxin reductas | 98.22 | |
| 1xhc_A | 367 | NADH oxidase /nitrite reductase; southe collaborat | 98.22 | |
| 3uox_A | 545 | Otemo; baeyer-villiger monooxygenase, oxidoreducta | 98.22 | |
| 4a5l_A | 314 | Thioredoxin reductase; oxidoreductase, redox metab | 98.21 | |
| 3ces_A | 651 | MNMG, tRNA uridine 5-carboxymethylaminomethyl modi | 98.21 | |
| 1k0i_A | 394 | P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, h | 98.2 | |
| 3lxd_A | 415 | FAD-dependent pyridine nucleotide-disulphide oxido | 98.19 | |
| 4gde_A | 513 | UDP-galactopyranose mutase; flavin adenine dinucle | 98.18 | |
| 3g5s_A | 443 | Methylenetetrahydrofolate--tRNA-(uracil-5-)- methy | 98.15 | |
| 3kd9_A | 449 | Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o | 98.13 | |
| 2bcg_G | 453 | Secretory pathway GDP dissociation inhibitor; RABG | 98.13 | |
| 1k0i_A | 394 | P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, h | 98.13 | |
| 2zxi_A | 637 | TRNA uridine 5-carboxymethylaminomethyl modificat | 98.12 | |
| 1v0j_A | 399 | UDP-galactopyranose mutase; flavoprotein, isomeras | 98.12 | |
| 3cp8_A | 641 | TRNA uridine 5-carboxymethylaminomethyl modificati | 98.11 | |
| 3oc4_A | 452 | Oxidoreductase, pyridine nucleotide-disulfide FAM; | 98.1 | |
| 2vou_A | 397 | 2,6-dihydroxypyridine hydroxylase; oxidoreductase, | 98.09 | |
| 4gcm_A | 312 | TRXR, thioredoxin reductase; FAD/NAD-linked reduct | 98.09 | |
| 3atr_A | 453 | Conserved archaeal protein; saturating double bond | 98.08 | |
| 4hb9_A | 412 | Similarities with probable monooxygenase; flavin, | 98.07 | |
| 2gqw_A | 408 | Ferredoxin reductase; flavoprotein, oxidoreductase | 98.05 | |
| 2xdo_A | 398 | TETX2 protein; tetracycline degradation, tigecycli | 98.04 | |
| 1w4x_A | 542 | Phenylacetone monooxygenase; baeyer-villiger, FAD; | 98.04 | |
| 2e1m_A | 376 | L-glutamate oxidase; L-amino acid oxidase, FAD, L- | 98.02 | |
| 3ics_A | 588 | Coenzyme A-disulfide reductase; pyridine nucleotid | 98.02 | |
| 3ihg_A | 535 | RDME; flavoenzyme, anthracycline, polyketide biosy | 98.01 | |
| 2b9w_A | 424 | Putative aminooxidase; isomerase, conjugated linol | 98.0 | |
| 3hdq_A | 397 | UDP-galactopyranose mutase; substrate and inhibito | 97.99 | |
| 1yvv_A | 336 | Amine oxidase, flavin-containing; oxidoreductase, | 97.98 | |
| 3ntd_A | 565 | FAD-dependent pyridine nucleotide-disulphide oxido | 97.98 | |
| 3s5w_A | 463 | L-ornithine 5-monooxygenase; class B flavin depend | 97.97 | |
| 3iwa_A | 472 | FAD-dependent pyridine nucleotide-disulphide oxido | 97.96 | |
| 1c0p_A | 363 | D-amino acid oxidase; alpha-beta-alpha motif, flav | 97.93 | |
| 2cdu_A | 452 | NADPH oxidase; flavoenzyme, oxidoreductase; HET: F | 97.92 | |
| 1rsg_A | 516 | FMS1 protein; FAD binding motif, oxidoreductase; H | 97.91 | |
| 1nhp_A | 447 | NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA | 97.91 | |
| 2bc0_A | 490 | NADH oxidase; flavoprotein, pyridine nucleotide di | 97.91 | |
| 4g6h_A | 502 | Rotenone-insensitive NADH-ubiquinone oxidoreducta | 97.89 | |
| 3ihm_A | 430 | Styrene monooxygenase A; rossman fold, anti-parall | 97.89 | |
| 1pn0_A | 665 | Phenol 2-monooxygenase; two dimers, TLS refinement | 97.89 | |
| 2jae_A | 489 | L-amino acid oxidase; oxidoreductase, dimerisation | 97.88 | |
| 2yg5_A | 453 | Putrescine oxidase; oxidoreductase, flavin; HET: F | 97.88 | |
| 2ivd_A | 478 | PPO, PPOX, protoporphyrinogen oxidase; porphyrin b | 97.88 | |
| 1i8t_A | 367 | UDP-galactopyranose mutase; rossman fold, FAD, con | 97.87 | |
| 1sez_A | 504 | Protoporphyrinogen oxidase, mitochondrial; FAD-bin | 97.87 | |
| 2vdc_G | 456 | Glutamate synthase [NADPH] small chain; oxidoreduc | 97.87 | |
| 1d5t_A | 433 | Guanine nucleotide dissociation inhibitor; ultra-h | 97.85 | |
| 3cgb_A | 480 | Pyridine nucleotide-disulfide oxidoreductase, CLA; | 97.85 | |
| 3l8k_A | 466 | Dihydrolipoyl dehydrogenase; redox-active center, | 97.82 | |
| 1m6i_A | 493 | Programmed cell death protein 8; apoptosis, AIF, o | 97.81 | |
| 3pl8_A | 623 | Pyranose 2-oxidase; substrate complex, H167A mutan | 97.8 | |
| 4eqs_A | 437 | Coenzyme A disulfide reductase; oxidoreductase; HE | 97.8 | |
| 2qae_A | 468 | Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin | 97.79 | |
| 2bi7_A | 384 | UDP-galactopyranose mutase; FAD, flavoprotein, iso | 97.74 | |
| 3lov_A | 475 | Protoporphyrinogen oxidase; structural genomics, J | 97.73 | |
| 1zk7_A | 467 | HGII, reductase, mercuric reductase; mercuric ION | 97.73 | |
| 1zmd_A | 474 | Dihydrolipoyl dehydrogenase; lipoamide dehydrogena | 97.73 | |
| 4dsg_A | 484 | UDP-galactopyranose mutase; rossmann fold, flavin | 97.72 | |
| 1dxl_A | 470 | Dihydrolipoamide dehydrogenase; oxidoreductase, mu | 97.71 | |
| 1ebd_A | 455 | E3BD, dihydrolipoamide dehydrogenase; redox-active | 97.71 | |
| 1ojt_A | 482 | Surface protein; redox-active center, glycolysis, | 97.7 | |
| 1v59_A | 478 | Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog | 97.69 | |
| 1y56_A | 493 | Hypothetical protein PH1363; dehydrogenase, protei | 97.68 | |
| 2hqm_A | 479 | GR, grase, glutathione reductase; glutathione redu | 97.67 | |
| 2iid_A | 498 | L-amino-acid oxidase; flavoenzyme, FAD binding dom | 97.67 | |
| 2a8x_A | 464 | Dihydrolipoyl dehydrogenase, E3 component of alpha | 97.67 | |
| 1cjc_A | 460 | Protein (adrenodoxin reductase); flavoenzyme, MAD | 97.65 | |
| 3urh_A | 491 | Dihydrolipoyl dehydrogenase; PSI-biology, structur | 97.65 | |
| 2aqj_A | 538 | Tryptophan halogenase, pRNA; flavin-dependent halo | 97.63 | |
| 2yqu_A | 455 | 2-oxoglutarate dehydrogenase E3 component; lipoami | 97.62 | |
| 1lvl_A | 458 | Dihydrolipoamide dehydrogenase; oxidoreductase; HE | 97.62 | |
| 1xdi_A | 499 | RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun | 97.61 | |
| 2v3a_A | 384 | Rubredoxin reductase; alkane degradation, NADH oxi | 97.61 | |
| 3jsk_A | 344 | Cypbp37 protein; octameric thiazole synthase, bios | 97.56 | |
| 1b37_A | 472 | Protein (polyamine oxidase); flavin-dependent amin | 97.55 | |
| 1ges_A | 450 | Glutathione reductase; oxidoreductase(flavoenzyme) | 97.52 | |
| 1lqt_A | 456 | FPRA; NADP+ derivative, oxidoreductase, structural | 97.51 | |
| 1mo9_A | 523 | ORF3; nucleotide binding motifs, nucleotide bindin | 97.51 | |
| 4hb9_A | 412 | Similarities with probable monooxygenase; flavin, | 97.51 | |
| 3qfa_A | 519 | Thioredoxin reductase 1, cytoplasmic; protein-prot | 97.47 | |
| 1gte_A | 1025 | Dihydropyrimidine dehydrogenase; electron transfer | 97.47 | |
| 2r9z_A | 463 | Glutathione amide reductase; NAD, FAD, substrate s | 97.46 | |
| 2eq6_A | 464 | Pyruvate dehydrogenase complex, dihydrolipoamide d | 97.45 | |
| 3o0h_A | 484 | Glutathione reductase; ssgcid, structur genomics, | 97.44 | |
| 3lad_A | 476 | Dihydrolipoamide dehydrogenase; oxidoreductase; HE | 97.43 | |
| 3g3e_A | 351 | D-amino-acid oxidase; FAD, flavoprotein, oxidoredu | 97.43 | |
| 2z3y_A | 662 | Lysine-specific histone demethylase 1; chromatin, | 97.42 | |
| 1onf_A | 500 | GR, grase, glutathione reductase; oxidoreductase; | 97.4 | |
| 3c4a_A | 381 | Probable tryptophan hydroxylase VIOD; alpha-beta p | 97.38 | |
| 2e5v_A | 472 | L-aspartate oxidase; archaea, oxidoreductase; HET: | 97.38 | |
| 1fec_A | 490 | Trypanothione reductase; redox-active center, oxid | 97.37 | |
| 4dna_A | 463 | Probable glutathione reductase; structural genomic | 97.36 | |
| 2gag_A | 965 | Heterotetrameric sarcosine oxidase alpha-subunit; | 97.35 | |
| 1ps9_A | 671 | 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel | 97.35 | |
| 2xag_A | 852 | Lysine-specific histone demethylase 1; amine oxida | 97.35 | |
| 3dk9_A | 478 | Grase, GR, glutathione reductase; flavoenzyme, nic | 97.33 | |
| 2wpf_A | 495 | Trypanothione reductase; oxidoreductase, trypanoso | 97.3 | |
| 4b1b_A | 542 | TRXR, thioredoxin reductase; oxidoreductase, FAD, | 97.28 | |
| 3dgh_A | 483 | TRXR-1, thioredoxin reductase 1, mitochondrial; ox | 97.27 | |
| 3k30_A | 690 | Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi | 97.26 | |
| 3dgz_A | 488 | Thioredoxin reductase 2; oxidoreductase, rossmann, | 97.23 | |
| 2x8g_A | 598 | Thioredoxin glutathione reductase; redox-active ce | 97.15 | |
| 1kf6_A | 602 | Fumarate reductase flavoprotein; respiration, fuma | 97.13 | |
| 1kdg_A | 546 | CDH, cellobiose dehydrogenase; GMC oxidoreductase, | 97.1 | |
| 1o94_A | 729 | Tmadh, trimethylamine dehydrogenase; electron tran | 97.08 | |
| 3ic9_A | 492 | Dihydrolipoamide dehydrogenase; APC62701, colwelli | 97.04 | |
| 3t37_A | 526 | Probable dehydrogenase; BET alpha beta fold, ADP b | 97.0 | |
| 1ju2_A | 536 | HydroxynitrIle lyase; flavin, GMC oxidoreductase, | 96.96 | |
| 3q9t_A | 577 | Choline dehydrogenase and related flavoproteins; g | 96.93 | |
| 3c4a_A | 381 | Probable tryptophan hydroxylase VIOD; alpha-beta p | 96.91 | |
| 4gde_A | 513 | UDP-galactopyranose mutase; flavin adenine dinucle | 96.9 | |
| 1coy_A | 507 | Cholesterol oxidase; oxidoreductase(oxygen recepto | 96.75 | |
| 1vg0_A | 650 | RAB proteins geranylgeranyltransferase component A | 96.71 | |
| 3qvp_A | 583 | Glucose oxidase; oxidoreductase; HET: NAG BMA MAN | 96.68 | |
| 1chu_A | 540 | Protein (L-aspartate oxidase); flavoenzyme, NAD bi | 96.67 | |
| 3ayj_A | 721 | Pro-enzyme of L-phenylalanine oxidase; amino acid | 96.67 | |
| 1n4w_A | 504 | CHOD, cholesterol oxidase; flavoenzyme, steroid me | 96.54 | |
| 3fim_B | 566 | ARYL-alcohol oxidase; AAO, lignin degradation, oxi | 96.51 | |
| 3pl8_A | 623 | Pyranose 2-oxidase; substrate complex, H167A mutan | 96.33 | |
| 1gpe_A | 587 | Protein (glucose oxidase); oxidoreductase(flavopro | 96.25 | |
| 2jbv_A | 546 | Choline oxidase; alcohol oxidation, flavoenyzme ox | 96.21 | |
| 4b63_A | 501 | L-ornithine N5 monooxygenase; oxidoreductase, side | 96.08 | |
| 3kkj_A | 336 | Amine oxidase, flavin-containing; oxidoreductase, | 95.38 | |
| 3gyx_A | 662 | Adenylylsulfate reductase; oxidoreductase; HET: FA | 95.05 | |
| 3fwz_A | 140 | Inner membrane protein YBAL; TRKA-N domain, E.coli | 94.32 | |
| 4dgk_A | 501 | Phytoene dehydrogenase; the FAD/NAD(P)-binding ros | 94.25 | |
| 3llv_A | 141 | Exopolyphosphatase-related protein; NAD(P)-binding | 94.2 | |
| 3dfz_A | 223 | SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase | 94.13 | |
| 1lss_A | 140 | TRK system potassium uptake protein TRKA homolog; | 94.04 | |
| 3rp8_A | 407 | Flavoprotein monooxygenase; FAD-binding protein, o | 93.81 | |
| 2iid_A | 498 | L-amino-acid oxidase; flavoenzyme, FAD binding dom | 93.77 | |
| 2g1u_A | 155 | Hypothetical protein TM1088A; structural genomics, | 93.61 | |
| 3ic5_A | 118 | Putative saccharopine dehydrogenase; structural ge | 93.6 | |
| 3eag_A | 326 | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME | 93.6 | |
| 1id1_A | 153 | Putative potassium channel protein; RCK domain, E. | 93.54 | |
| 2g1u_A | 155 | Hypothetical protein TM1088A; structural genomics, | 93.51 | |
| 3c96_A | 410 | Flavin-containing monooxygenase; FAD, oxidoreducta | 93.38 | |
| 3lk7_A | 451 | UDP-N-acetylmuramoylalanine--D-glutamate ligase; a | 93.36 | |
| 3oz2_A | 397 | Digeranylgeranylglycerophospholipid reductase; str | 93.24 | |
| 2bcg_G | 453 | Secretory pathway GDP dissociation inhibitor; RABG | 93.19 | |
| 3ihm_A | 430 | Styrene monooxygenase A; rossman fold, anti-parall | 93.15 | |
| 1d5t_A | 433 | Guanine nucleotide dissociation inhibitor; ultra-h | 93.06 | |
| 2qa2_A | 499 | CABE, polyketide oxygenase CABE; FAD, angucycline, | 92.95 | |
| 3nix_A | 421 | Flavoprotein/dehydrogenase; structural genomics, P | 92.94 | |
| 3i3l_A | 591 | Alkylhalidase CMLS; flavin-dependent halogenase, c | 92.61 | |
| 3hwr_A | 318 | 2-dehydropantoate 2-reductase; YP_299159.1, PANE/A | 92.57 | |
| 2qa1_A | 500 | PGAE, polyketide oxygenase PGAE; FAD, angucycline, | 92.53 | |
| 2r0c_A | 549 | REBC; flavin adenine dinucleotide, monooxygenase, | 92.41 | |
| 3fwz_A | 140 | Inner membrane protein YBAL; TRKA-N domain, E.coli | 92.38 | |
| 3nrn_A | 421 | Uncharacterized protein PF1083; alpha-beta protein | 92.38 | |
| 2pyx_A | 526 | Tryptophan halogenase; structural genomics, JOI fo | 92.2 | |
| 3fmw_A | 570 | Oxygenase; mithramycin, baeyer-villiger, flavin bi | 92.04 | |
| 2hmt_A | 144 | YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane | 92.02 | |
| 3ka7_A | 425 | Oxidoreductase; structural genomics, PSI-2, protei | 91.9 | |
| 3fpz_A | 326 | Thiazole biosynthetic enzyme; FAD, mitochondrion, | 91.85 | |
| 4e12_A | 283 | Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1 | 91.61 | |
| 1f0y_A | 302 | HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive | 91.5 | |
| 3nks_A | 477 | Protoporphyrinogen oxidase; FAD containing protein | 91.49 | |
| 3dme_A | 369 | Conserved exported protein; structural genomics, P | 91.45 | |
| 3k7m_X | 431 | 6-hydroxy-L-nicotine oxidase; enantiomeric substra | 91.44 | |
| 3dfz_A | 223 | SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase | 91.37 | |
| 3v76_A | 417 | Flavoprotein; structural genomics, PSI-biology, NE | 91.33 | |
| 2jae_A | 489 | L-amino acid oxidase; oxidoreductase, dimerisation | 91.33 | |
| 2e1m_A | 376 | L-glutamate oxidase; L-amino acid oxidase, FAD, L- | 91.2 | |
| 2oln_A | 397 | NIKD protein; flavoprotein, rossmann fold, oxidore | 91.18 | |
| 1ryi_A | 382 | Glycine oxidase; flavoprotein, protein-inhibitor c | 91.07 | |
| 3l4b_C | 218 | TRKA K+ channel protien TM1088B; potassium channel | 90.97 | |
| 3cgv_A | 397 | Geranylgeranyl reductase related protein; NP_39399 | 90.9 | |
| 2b9w_A | 424 | Putative aminooxidase; isomerase, conjugated linol | 90.84 | |
| 2dkh_A | 639 | 3-hydroxybenzoate hydroxylase; flavoprotein, monoo | 90.83 | |
| 1kyq_A | 274 | Met8P, siroheme biosynthesis protein Met8; homodim | 90.83 | |
| 2e4g_A | 550 | Tryptophan halogenase; flavin-binding, rebeccamyci | 90.81 | |
| 2uzz_A | 372 | N-methyl-L-tryptophan oxidase; N-methyltryptophan | 90.8 | |
| 1t2d_A | 322 | LDH-P, L-lactate dehydrogenase; ternary complex, o | 90.79 | |
| 3g5s_A | 443 | Methylenetetrahydrofolate--tRNA-(uracil-5-)- methy | 90.79 | |
| 2ewd_A | 317 | Lactate dehydrogenase,; protein-substrate_cofactor | 90.76 | |
| 1c0p_A | 363 | D-amino acid oxidase; alpha-beta-alpha motif, flav | 90.74 | |
| 2gf3_A | 389 | MSOX, monomeric sarcosine oxidase; flavoprotein ox | 90.72 | |
| 2bs2_A | 660 | Quinol-fumarate reductase flavoprotein subunit A; | 90.69 | |
| 3c85_A | 183 | Putative glutathione-regulated potassium-efflux S | 90.63 | |
| 3qj4_A | 342 | Renalase; FAD/NAD(P)-binding rossmann fold superfa | 90.61 | |
| 3ado_A | 319 | Lambda-crystallin; L-gulonate 3-dehydrogenase, str | 90.4 | |
| 1rsg_A | 516 | FMS1 protein; FAD binding motif, oxidoreductase; H | 90.37 | |
| 1vg0_A | 650 | RAB proteins geranylgeranyltransferase component A | 90.32 | |
| 4dio_A | 405 | NAD(P) transhydrogenase subunit alpha PART 1; stru | 90.3 | |
| 2weu_A | 511 | Tryptophan 5-halogenase; regioselectivity, antifun | 90.27 | |
| 2x5o_A | 439 | UDP-N-acetylmuramoylalanine--D-glutamate ligase; A | 90.19 | |
| 1b37_A | 472 | Protein (polyamine oxidase); flavin-dependent amin | 90.19 | |
| 1y56_B | 382 | Sarcosine oxidase; dehydrogenase, protein-protein | 90.18 | |
| 1pn0_A | 665 | Phenol 2-monooxygenase; two dimers, TLS refinement | 90.17 | |
| 1s3e_A | 520 | Amine oxidase [flavin-containing] B; human monoami | 89.91 | |
| 3llv_A | 141 | Exopolyphosphatase-related protein; NAD(P)-binding | 89.91 | |
| 2bi7_A | 384 | UDP-galactopyranose mutase; FAD, flavoprotein, iso | 89.86 | |
| 3lk7_A | 451 | UDP-N-acetylmuramoylalanine--D-glutamate ligase; a | 89.85 | |
| 1bg6_A | 359 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L | 89.82 | |
| 3nyc_A | 381 | D-arginine dehydrogenase; FAD, imino-arginine, oxi | 89.56 | |
| 3e1t_A | 512 | Halogenase; flavoprotein; HET: FAD; 2.05A {Chondro | 89.49 | |
| 2a9f_A | 398 | Putative malic enzyme ((S)-malate:NAD+ oxidoreduct | 89.48 | |
| 2ivd_A | 478 | PPO, PPOX, protoporphyrinogen oxidase; porphyrin b | 89.46 | |
| 3i6d_A | 470 | Protoporphyrinogen oxidase; protein-inhibitor comp | 89.41 | |
| 3i83_A | 320 | 2-dehydropantoate 2-reductase; structural genomics | 89.29 | |
| 1sez_A | 504 | Protoporphyrinogen oxidase, mitochondrial; FAD-bin | 89.2 | |
| 3hn7_A | 524 | UDP-N-acetylmuramate-L-alanine ligase; ATP-binding | 89.09 | |
| 2yg5_A | 453 | Putrescine oxidase; oxidoreductase, flavin; HET: F | 89.02 | |
| 3hn2_A | 312 | 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str | 88.93 | |
| 3dje_A | 438 | Fructosyl amine: oxygen oxidoreductase; fructosyl- | 88.9 | |
| 2gag_B | 405 | Heterotetrameric sarcosine oxidase beta-subunit; f | 88.79 | |
| 3nlc_A | 549 | Uncharacterized protein VP0956; FAD-binding protei | 88.71 | |
| 4hv4_A | 494 | UDP-N-acetylmuramate--L-alanine ligase; MURC, yers | 88.66 | |
| 3k6j_A | 460 | Protein F01G10.3, confirmed by transcript evidenc; | 88.65 | |
| 2ew2_A | 316 | 2-dehydropantoate 2-reductase, putative; alpha-str | 88.64 | |
| 3p2y_A | 381 | Alanine dehydrogenase/pyridine nucleotide transhy; | 88.62 | |
| 1jnr_A | 643 | Adenylylsulfate reductase; oxidoreductase; HET: FA | 88.61 | |
| 3hdq_A | 397 | UDP-galactopyranose mutase; substrate and inhibito | 88.58 | |
| 3ghy_A | 335 | Ketopantoate reductase protein; oxidoreductase, NA | 88.55 | |
| 1lld_A | 319 | L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N | 88.52 | |
| 2i0z_A | 447 | NAD(FAD)-utilizing dehydrogenases; structural geno | 88.45 | |
| 3ps9_A | 676 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 88.38 | |
| 2vvm_A | 495 | Monoamine oxidase N; FAD, peroxisome, flavoprotein | 88.19 | |
| 3pvc_A | 689 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 88.16 | |
| 3g3e_A | 351 | D-amino-acid oxidase; FAD, flavoprotein, oxidoredu | 88.08 | |
| 1pzg_A | 331 | LDH, lactate dehydrogenase; apicomplexa, APAD, tet | 88.04 | |
| 4g65_A | 461 | TRK system potassium uptake protein TRKA; structur | 87.89 | |
| 2hjr_A | 328 | Malate dehydrogenase; malaria, structural genomics | 87.83 | |
| 2qcu_A | 501 | Aerobic glycerol-3-phosphate dehydrogenase; glycer | 87.75 | |
| 1id1_A | 153 | Putative potassium channel protein; RCK domain, E. | 87.73 | |
| 3gg2_A | 450 | Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd | 87.67 | |
| 3c4n_A | 405 | Uncharacterized protein DR_0571; alpha-beta protei | 87.64 | |
| 3ego_A | 307 | Probable 2-dehydropantoate 2-reductase; structural | 87.6 | |
| 1vl6_A | 388 | Malate oxidoreductase; TM0542, NAD-dependent malic | 87.54 | |
| 1ez4_A | 318 | Lactate dehydrogenase; rossmann fold, oxidoreducta | 87.51 | |
| 1y6j_A | 318 | L-lactate dehydrogenase; southeast collaboratory f | 87.49 | |
| 2raf_A | 209 | Putative dinucleotide-binding oxidoreductase; NP_7 | 87.45 | |
| 1v0j_A | 399 | UDP-galactopyranose mutase; flavoprotein, isomeras | 87.43 | |
| 1x13_A | 401 | NAD(P) transhydrogenase subunit alpha; NAD(H)-bind | 87.41 | |
| 1i8t_A | 367 | UDP-galactopyranose mutase; rossman fold, FAD, con | 87.36 | |
| 1lss_A | 140 | TRK system potassium uptake protein TRKA homolog; | 87.32 | |
| 2v6b_A | 304 | L-LDH, L-lactate dehydrogenase; oxidoreductase, ra | 87.21 | |
| 2y0c_A | 478 | BCEC, UDP-glucose dehydrogenase; oxidoreductase, c | 87.2 | |
| 3qha_A | 296 | Putative oxidoreductase; seattle structural genomi | 87.06 | |
| 3eag_A | 326 | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME | 87.05 | |
| 1ur5_A | 309 | Malate dehydrogenase; oxidoreductase, tricarboxyli | 87.02 | |
| 3ado_A | 319 | Lambda-crystallin; L-gulonate 3-dehydrogenase, str | 86.9 | |
| 2rgh_A | 571 | Alpha-glycerophosphate oxidase; flavoprotein oxida | 86.83 | |
| 3ic5_A | 118 | Putative saccharopine dehydrogenase; structural ge | 86.8 | |
| 3tl2_A | 315 | Malate dehydrogenase; center for structural genomi | 86.77 | |
| 2z3y_A | 662 | Lysine-specific histone demethylase 1; chromatin, | 86.75 | |
| 3g17_A | 294 | Similar to 2-dehydropantoate 2-reductase; structur | 86.73 | |
| 2dpo_A | 319 | L-gulonate 3-dehydrogenase; structural genomics, N | 86.69 | |
| 4ffl_A | 363 | PYLC; amino acid, biosynthesis of pyrrolysine, iso | 86.58 | |
| 1y0p_A | 571 | Fumarate reductase flavoprotein subunit; flavocyto | 86.54 | |
| 1jw9_B | 249 | Molybdopterin biosynthesis MOEB protein; MOEB: mod | 86.38 | |
| 2xag_A | 852 | Lysine-specific histone demethylase 1; amine oxida | 86.35 | |
| 3doj_A | 310 | AT3G25530, dehydrogenase-like protein; gamma-hydro | 86.31 | |
| 1l7d_A | 384 | Nicotinamide nucleotide transhydrogenase, subunit | 86.28 | |
| 3g79_A | 478 | NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; | 86.23 | |
| 3hwr_A | 318 | 2-dehydropantoate 2-reductase; YP_299159.1, PANE/A | 86.1 | |
| 3k96_A | 356 | Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA | 86.09 | |
| 2q3e_A | 467 | UDP-glucose 6-dehydrogenase; hexamer, structural g | 86.07 | |
| 2raf_A | 209 | Putative dinucleotide-binding oxidoreductase; NP_7 | 86.03 | |
| 1ks9_A | 291 | KPA reductase;, 2-dehydropantoate 2-reductase; PAN | 85.92 | |
| 3da1_A | 561 | Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9 | 85.89 | |
| 1pjc_A | 361 | Protein (L-alanine dehydrogenase); oxidoreductase, | 85.87 | |
| 3lov_A | 475 | Protoporphyrinogen oxidase; structural genomics, J | 85.86 | |
| 3axb_A | 448 | Putative oxidoreductase; dinucleotide-binding fold | 85.84 | |
| 3vtf_A | 444 | UDP-glucose 6-dehydrogenase; two discrete alpha/be | 85.72 | |
| 3cky_A | 301 | 2-hydroxymethyl glutarate dehydrogenase; rossmann | 85.38 | |
| 1qo8_A | 566 | Flavocytochrome C3 fumarate reductase; oxidoreduct | 85.29 | |
| 3l9w_A | 413 | Glutathione-regulated potassium-efflux system Pro | 85.23 | |
| 3ego_A | 307 | Probable 2-dehydropantoate 2-reductase; structural | 85.2 | |
| 2gjc_A | 326 | Thiazole biosynthetic enzyme, mitochondrial; gluta | 84.97 | |
| 4dsg_A | 484 | UDP-galactopyranose mutase; rossmann fold, flavin | 84.93 | |
| 2hmt_A | 144 | YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane | 84.87 | |
| 3dhn_A | 227 | NAD-dependent epimerase/dehydratase; reductase, PF | 84.87 | |
| 3gvi_A | 324 | Malate dehydrogenase; NAD, oxidoreductase, tricarb | 84.86 | |
| 4e12_A | 283 | Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1 | 84.76 | |
| 3pqe_A | 326 | L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas | 84.7 | |
| 4e21_A | 358 | 6-phosphogluconate dehydrogenase (decarboxylating; | 84.68 | |
| 4at0_A | 510 | 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidore | 84.6 | |
| 3oj0_A | 144 | Glutr, glutamyl-tRNA reductase; structural genomic | 84.56 | |
| 1kyq_A | 274 | Met8P, siroheme biosynthesis protein Met8; homodim | 84.52 | |
| 1zcj_A | 463 | Peroxisomal bifunctional enzyme; peroxisomal multi | 84.35 | |
| 1z82_A | 335 | Glycerol-3-phosphate dehydrogenase; TM0378, struct | 84.31 | |
| 3l4b_C | 218 | TRKA K+ channel protien TM1088B; potassium channel | 84.04 | |
| 1y7t_A | 327 | Malate dehydrogenase; NAD-dependent-MDH-NADPH comp | 84.04 | |
| 3p7m_A | 321 | Malate dehydrogenase; putative dehydrogenase, enzy | 83.9 | |
| 1pjq_A | 457 | CYSG, siroheme synthase; rossman fold, nucleotide | 83.84 | |
| 3pid_A | 432 | UDP-glucose 6-dehydrogenase; rossmann fold, oxidor | 83.82 | |
| 2qrj_A | 394 | Saccharopine dehydrogenase, NAD+, L-lysine- formin | 83.82 | |
| 1mv8_A | 436 | GMD, GDP-mannose 6-dehydrogenase; rossman fold, do | 83.81 | |
| 2gmh_A | 584 | Electron transfer flavoprotein-ubiquinone oxidored | 83.75 |
| >4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-78 Score=643.43 Aligned_cols=452 Identities=35% Similarity=0.611 Sum_probs=377.9
Q ss_pred CccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhh-hccCCCcc
Q 008860 72 DFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFD-ESNGFGWK 150 (551)
Q Consensus 72 ~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~-~~~~~g~~ 150 (551)
+|||+|||||+||+.||.++++.|.+|+|||+.... ....++.+||+|+|+||+|+|.|+.+++..+..+ +...||+.
T Consensus 42 dYDviVIG~GpaG~~aA~~aa~~G~kValIE~~~~~-~~~~k~~lGGtCln~GCIPsK~L~~aa~~~~~~~~~~~~~Gi~ 120 (542)
T 4b1b_A 42 DYDYVVIGGGPGGMASAKEAAAHGARVLLFDYVKPS-SQGTKWGIGGTCVNVGCVPKKLMHYAGHMGSIFKLDSKAYGWK 120 (542)
T ss_dssp SEEEEEECCSHHHHHHHHHHHTTTCCEEEECCCCCC-TTCCCCCSSHHHHHHSHHHHHHHHHHHHHHHHHHHTGGGGTEE
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccccc-cccccCCCCCcccccchHHHHHHHHHHHHHHHHHhhhHhcCcc
Confidence 599999999999999999999999999999931100 0112456999999999999999999998887776 56678887
Q ss_pred cCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEeEEEEecCCEEEE-------cCEEEEeCeEEEcCCCCCCC
Q 008860 151 YGTEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIEGRGKIVDPHTVDV-------DGKLYSARHILISVGGRPFI 223 (551)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~i~~~~v~v-------~g~~~~~d~lviAtG~~p~~ 223 (551)
.. ...+||..++.+.+..++++...+...+++.+|+++.+.+.+++++++.+ +++.+.+|++|||||++|..
T Consensus 121 ~~-~~~~d~~~~~~~~~~~v~~l~~~~~~~l~~~~V~~i~G~a~f~~~~~v~V~~~~~~~~~~~i~a~~iiIATGs~P~~ 199 (542)
T 4b1b_A 121 FD-NLKHDWKKLVTTVQSHIRSLNFSYMTGLRSSKVKYINGLAKLKDKNTVSYYLKGDLSKEETVTGKYILIATGCRPHI 199 (542)
T ss_dssp EE-EEEECHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECEEEEEEETTEEEEEEC--CCCEEEEEEEEEEECCCEEECC
T ss_pred cC-cccccHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEeeeEEEcCCCcceEeecccCCceEEEeeeeEEeccCCCCCC
Confidence 64 46789999999999999999888888999999999999999999999887 34679999999999999999
Q ss_pred CCCCCC--CceecchhhhcCCCCCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCCCCCHHHHHHHHHHHHhcCc
Q 008860 224 PDIPGS--EYAIDSDAALDLPSKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRDFVAEQMSLRGI 301 (551)
Q Consensus 224 p~i~g~--~~~~~~~~~~~~~~~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~Gv 301 (551)
|+.++. +.+++++++++++++|++++|||+|++|+|+|..|+++|.+||++.+ +.+++.+|+++++.+.+.|+++||
T Consensus 200 P~~~~~~~~~~~ts~~~l~l~~lP~~lvIIGgG~IGlE~A~~~~~lG~~VTii~~-~~~L~~~D~ei~~~l~~~l~~~gi 278 (542)
T 4b1b_A 200 PDDVEGAKELSITSDDIFSLKKDPGKTLVVGASYVALECSGFLNSLGYDVTVAVR-SIVLRGFDQQCAVKVKLYMEEQGV 278 (542)
T ss_dssp CSSSBTHHHHCBCHHHHTTCSSCCCSEEEECCSHHHHHHHHHHHHHTCCEEEEES-SCSSTTSCHHHHHHHHHHHHHTTC
T ss_pred CCcccCCCccccCchhhhccccCCceEEEECCCHHHHHHHHHHHhcCCeEEEecc-cccccccchhHHHHHHHHHHhhcc
Confidence 875543 35789999999999999999999999999999999999999999987 567889999999999999999999
Q ss_pred EEEcCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCcCCCCCCCCccccCeeecCCCCe-EeCCCCCCCCCcEEEeC
Q 008860 302 EFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNTKNLGLEKVGVKMTKNGAI-EVDEYSGTAVPSIWAVG 380 (551)
Q Consensus 302 ~i~~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i-~vd~~~~t~~~~vya~G 380 (551)
++++++.+++++..+++ +.|.+.+++++.+|.|++|+|++||++.|+++..++.++.+|++ .+|+++||++|||||+|
T Consensus 279 ~~~~~~~v~~~~~~~~~-~~v~~~~~~~~~~D~vLvAvGR~Pnt~~L~le~~gv~~~~~~~~i~vd~~~~Ts~p~IyAiG 357 (542)
T 4b1b_A 279 MFKNGILPKKLTKMDDK-ILVEFSDKTSELYDTVLYAIGRKGDIDGLNLESLNMNVNKSNNKIIADHLSCTNIPSIFAVG 357 (542)
T ss_dssp EEEETCCEEEEEEETTE-EEEEETTSCEEEESEEEECSCEEESCGGGCGGGTTCCEETTTTEECCCTTSBCSSTTEEECT
T ss_pred eeecceEEEEEEecCCe-EEEEEcCCCeEEEEEEEEcccccCCccccCcccceeeecccCceEeccccccccCCCeEEec
Confidence 99999999999987766 78889999899999999999999999999999999999877665 78899999999999999
Q ss_pred cCCCC-CCChHHHHHhHHHHHHHHcCCCCCCCCCCCccEEEecCCceEEeeCCHHHHHhcCC--CeEEEEeeccCcccc-
Q 008860 381 DVTDR-INLTPVALMEGGALAKTLFQAEPTKPDYSAVPSAVFSQPPIGQVGLSEEQAIQEYG--DIDVFTANFRPLKAT- 456 (551)
Q Consensus 381 D~~~~-~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~~~~~~~~~~~~~vGl~~~~a~~~~~--~~~~~~~~~~~~~~~- 456 (551)
||++. +.+++.|.+||+++++|++|......+|..+|+++|++|++++||+||+||++++. ++.++...+.....+
T Consensus 358 Dv~~~~p~La~~A~~eg~~aa~~i~g~~~~~~d~~~iP~~vft~PeiA~VGlTE~eA~~~g~~~~v~~~~~~~~~~~~~~ 437 (542)
T 4b1b_A 358 DVAENVPELAPVAIKAGEILARRLFKDSDEIMDYSYIPTSIYTPIEYGACGYSEEKAYELYGKSNVEVFLQEFNNLEISA 437 (542)
T ss_dssp TSBTTCCCCHHHHHHHHHHHHHHHHSCCCCCCCCSSCCEEECSSSCEEEEECCHHHHHHHHCTTTEEEEEC---------
T ss_pred cccCCchhHHHHHHHHHHHHHHHHhcCCCcccCCCCCceEEeCCCCeEEEeCCHHHHHHhCCCCcEEEEEeeccchhhhh
Confidence 99976 68999999999999999999887778999999999999999999999999998864 455555444333221
Q ss_pred --------------cccCCCcEEEEEEE-ECCCCeEEEEEEECCChhHHHHHHHHHHHCCCCHHHHccCcccCCCchHHH
Q 008860 457 --------------LSGLPDRIFMKLVL-CAKTNKVLGLHMCGEDAPEIVQGFAVAVKAGLTKADFDATVGVHPTAAEEF 521 (551)
Q Consensus 457 --------------~~~~~~~~~~kl~~-~~~~~~ilG~~~~g~~~~e~i~~~~~~i~~~~~~~~l~~~~~~~pt~~e~~ 521 (551)
.....+.+|+|+++ ++++++|||+|++|++|+|+|+.+++||++++|++||.+++|+|||++|+|
T Consensus 438 ~~~~~~~~~~~~~~~~~~~~~g~vKli~~~~~t~~ILGa~ivG~~A~ElI~~~alAi~~~~t~~dl~~~i~~HPTlsE~l 517 (542)
T 4b1b_A 438 VHRQKHIRAQKDEYDLDVSSTCLAKLVCLKNEDNRVIGFHYVGPNAGEVTQGMALALRLKVKKKDFDNCIGIHPTDAESF 517 (542)
T ss_dssp --------------------CCCEEEEEETTTTTBEEEEEEESTTHHHHHHHHHHHHHTCCBHHHHHHC-----------
T ss_pred hhhhhhhhcccccccccCCCceEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhccCCcCCCHHHHH
Confidence 12245678999996 567899999999999999999999999999999999999999999999999
Q ss_pred HHHHhh
Q 008860 522 VTLRTP 527 (551)
Q Consensus 522 ~~~~~~ 527 (551)
.++...
T Consensus 518 ~~~~~t 523 (542)
T 4b1b_A 518 MNLFVT 523 (542)
T ss_dssp ------
T ss_pred HHHHHH
Confidence 886443
|
| >4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-75 Score=614.48 Aligned_cols=446 Identities=48% Similarity=0.818 Sum_probs=417.6
Q ss_pred CccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhhccCCCccc
Q 008860 72 DFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDESNGFGWKY 151 (551)
Q Consensus 72 ~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~~ 151 (551)
+|||+|||||++|+++|+.|++.|++|+||| +..+||+|.+.||+|++.++..++....+.+...|++..
T Consensus 5 ~~DVvVIGaG~aGl~aA~~la~~G~~V~liE----------k~~~GG~~~~~gcip~k~l~~~~~~~~~~~~~~~~g~~~ 74 (463)
T 4dna_A 5 DYDLFVIGGGSGGVRSGRLAAALGKKVAIAE----------EFRYGGTCVIRGCVPKKLYVYASQFAEHFEDAAGFGWTV 74 (463)
T ss_dssp SEEEEEECCSHHHHHHHHHHHTTTCCEEEEE----------SSCTTHHHHHHSHHHHHHHHHHHHHHHHHHHGGGGTEEE
T ss_pred CCcEEEECcCHHHHHHHHHHHhCCCEEEEEe----------CCCCCCcccccCchhhHHHHHHHHHHHHHHHHHhcCccc
Confidence 6999999999999999999999999999999 677999999999999999999999999999999998876
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEeEEEEecCCEEEE--cCEEEEeCeEEEcCCCCCC-CCCCCC
Q 008860 152 GTEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIEGRGKIVDPHTVDV--DGKLYSARHILISVGGRPF-IPDIPG 228 (551)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~i~~~~v~v--~g~~~~~d~lviAtG~~p~-~p~i~g 228 (551)
. .+.++|..+..+.......+...+...+.+.+++++.+++.+++++.+.+ +++.+.||++|+|||++|. .|++||
T Consensus 75 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~i~~~~v~~~~~~~~~~~d~lviAtG~~p~~~p~i~G 153 (463)
T 4dna_A 75 G-ESRFDWAKLVAAKEQEIARLEGLYRKGLANAGAEILDTRAELAGPNTVKLLASGKTVTAERIVIAVGGHPSPHDALPG 153 (463)
T ss_dssp C-CCEECHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEESCEEESSSSEEEETTTTEEEEEEEEEECCCEEECCCTTSTT
T ss_pred C-CCCcCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEeeCCEEEEecCCeEEEeCEEEEecCCCcccCCCCCC
Confidence 4 45789999999998888888888888888889999999999999999999 7889999999999999999 999999
Q ss_pred CCceecchhhhcCCCCCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCCCCCHHHHHHHHHHHHhcCcEEEcCcc
Q 008860 229 SEYAIDSDAALDLPSKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRDFVAEQMSLRGIEFHTEES 308 (551)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~~~~~ 308 (551)
.+.++++++++.+...+++++|||+|++|+|+|..+.++|.+|+++++.+.+++.+++++.+.+.+.+++.||++++++.
T Consensus 154 ~~~~~~~~~~~~~~~~~~~v~ViGgG~~g~e~A~~l~~~g~~Vt~v~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~~~~~ 233 (463)
T 4dna_A 154 HELCITSNEAFDLPALPESILIAGGGYIAVEFANIFHGLGVKTTLIYRGKEILSRFDQDMRRGLHAAMEEKGIRILCEDI 233 (463)
T ss_dssp GGGCBCHHHHTTCSSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHTTCEEECSCC
T ss_pred ccccccHHHHhhhhcCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCccccccCHHHHHHHHHHHHHCCCEEECCCE
Confidence 98899999999998899999999999999999999999999999999999999889999999999999999999999999
Q ss_pred cEEEEEcCCceEEEE-ECCCeEEEeeEEEEecCcCCCCCCCCccccCeeecCCCCeEeCCCCCCCCCcEEEeCcCCCCCC
Q 008860 309 PQAILKSTDGSLSVK-TNKGTVDGFSHVMFATGRRPNTKNLGLEKVGVKMTKNGAIEVDEYSGTAVPSIWAVGDVTDRIN 387 (551)
Q Consensus 309 v~~i~~~~~~~~~V~-~~~G~~i~~d~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~t~~~~vya~GD~~~~~~ 387 (551)
|++++.++++.+.|. +.+|+ +++|.||+|+|++|++.+++++..|++++++|+|.||+++||++|+|||+|||++.++
T Consensus 234 v~~i~~~~~~~~~v~~~~~g~-i~aD~Vv~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~t~~~~iya~GD~~~~~~ 312 (463)
T 4dna_A 234 IQSVSADADGRRVATTMKHGE-IVADQVMLALGRMPNTNGLGLEAAGVRTNELGAIIVDAFSRTSTPGIYALGDVTDRVQ 312 (463)
T ss_dssp EEEEEECTTSCEEEEESSSCE-EEESEEEECSCEEESCTTSSTGGGTCCBCTTSCBCCCTTCBCSSTTEEECSGGGSSCC
T ss_pred EEEEEEcCCCEEEEEEcCCCe-EEeCEEEEeeCcccCCCCCCccccCceECCCCCEeECcCCCCCCCCEEEEEecCCCCC
Confidence 999998766546788 88998 9999999999999999988888999999999999999999999999999999999999
Q ss_pred ChHHHHHhHHHHHHHHcCCCCCCCCCCCccEEEecCCceEEeeCCHHHHHhcCCCeEEEEeeccCcccccccCCCcEEEE
Q 008860 388 LTPVALMEGGALAKTLFQAEPTKPDYSAVPSAVFSQPPIGQVGLSEEQAIQEYGDIDVFTANFRPLKATLSGLPDRIFMK 467 (551)
Q Consensus 388 ~~~~A~~~g~~aa~~i~g~~~~~~~~~~~~~~~~~~~~~~~vGl~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k 467 (551)
+++.|..||+++|+||+|......++..+|+++|++|+++++|++|+||++++.++.++..+|..+.+++..+.+.+|+|
T Consensus 313 ~~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~~~~~~p~~a~vG~te~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k 392 (463)
T 4dna_A 313 LTPVAIHEAMCFIETEYKNNPTSPDHDLIATAVFSQPEIGTVGITEEEAARKFQEIEVYRAEFRPMKATLSGRKEKTIMK 392 (463)
T ss_dssp CHHHHHHHHHHHHHHHHSSCCCCCCCSCCCEEECSSSCEEEEECCHHHHHHHSSEEEEEEEEECCTTHHHHCCCCCEEEE
T ss_pred ChHHHHHHHHHHHHHHcCCCCcccCCCCCCEEEECCCCeEEecCCHHHHHHcCCCeEEEEEeccccchhhcCCCceEEEE
Confidence 99999999999999999877666788899999999999999999999999998788888888888888887888899999
Q ss_pred EEEECCCCeEEEEEEECCChhHHHHHHHHHHHCCCCHHHHccCcccCCCchHHHHHHHhhhh
Q 008860 468 LVLCAKTNKVLGLHMCGEDAPEIVQGFAVAVKAGLTKADFDATVGVHPTAAEEFVTLRTPTR 529 (551)
Q Consensus 468 l~~~~~~~~ilG~~~~g~~~~e~i~~~~~~i~~~~~~~~l~~~~~~~pt~~e~~~~~~~~~~ 529 (551)
+++|+++|+|||+|++|+++.|+|+.+++||++++|++||.+++++|||++|++.++....+
T Consensus 393 ~~~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~~~~~~ 454 (463)
T 4dna_A 393 LVVNAADRKVVGAHILGHDAGEMAQLLGISLRAGCTKDDFDRTMAVHPTAAEELVTMYQPSY 454 (463)
T ss_dssp EEEETTTCBEEEEEEESTTHHHHHHHHHHHHHTTCBHHHHHTSCCCTTCSGGGGTCCCSCSE
T ss_pred EEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhcccCCCCHHHHHHHHhhhcc
Confidence 99999999999999999999999999999999999999999999999999999888775544
|
| >2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.4e-74 Score=609.78 Aligned_cols=460 Identities=42% Similarity=0.727 Sum_probs=414.7
Q ss_pred CCCCCccEEEECCChHHHHHHHHHHh-CCCcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhhccC
Q 008860 68 PSHYDFDLFTIGAGSGGVRASRFAAN-FGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDESNG 146 (551)
Q Consensus 68 ~~~~~~dVvIIGgG~aGl~aA~~l~~-~G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~ 146 (551)
+|+.+|||+|||||+||+++|.+|++ .|++|+|||++... ...++..+||+|.+.||+|+|.++..+++.+.+.+...
T Consensus 3 ~M~~~~dvvVIGgG~aGl~aA~~la~~~G~~V~liE~~~~~-~~~~~~~~GG~~~~~gciP~k~l~~~a~~~~~~~~~~~ 81 (495)
T 2wpf_A 3 HMSKAFDLVVIGAGSGGLEAGWNAATLYGKRVAVVDVQTSH-GPPFYAALGGTCVNVGCVPKKLMVTGAQYMDHLRESAG 81 (495)
T ss_dssp CCCEEEEEEEECCSHHHHHHHHHHHHHHCCCEEEEESCSSS-BTTTBCBTTHHHHHHSHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CcccccCEEEECCChhHHHHHHHHHHhcCCeEEEEeccccc-ccccCCCCCCeeecCCcchHHHHHHHHHHHHHHhHHHh
Confidence 46567999999999999999999999 99999999932111 22335678999999999999999999988888888888
Q ss_pred CCcccCCCC--CCChHHHHHHHHHHHHHHHHHHHHHHHhC-CeEEEEeEEEEecCCEEEEc---------CEEEEeCeEE
Q 008860 147 FGWKYGTEP--QHDWSTLIANKNAELQRLTGIYKNILINA-GITLIEGRGKIVDPHTVDVD---------GKLYSARHIL 214 (551)
Q Consensus 147 ~g~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~i~~~~v~v~---------g~~~~~d~lv 214 (551)
||+... .+ .++|..+..+..+.++++...+...+++. +|+++.+++.+++++++.++ ++.+.||+||
T Consensus 82 ~g~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~gv~~~~g~~~~i~~~~v~v~~~~~~~~~~~~~~~~d~lV 160 (495)
T 2wpf_A 82 FGWEFD-GSSVKANWKKLIAAKNEAVLDINKSYEGMFNDTEGLDFFLGWGSLESKNVVVVRETADPKSAVKERLQADHIL 160 (495)
T ss_dssp TTEECC-GGGCEECHHHHHHHHHHHHHHHHHHHHHHHHHCTTEEEEESEEEEEETTEEEEESSSSTTSCEEEEEEEEEEE
T ss_pred cCcccC-CcccccCHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeEEEEeeCCEEEEeecCCccCCCCeEEEcCEEE
Confidence 888643 23 67999999999988888888888888888 99999999999999999884 6789999999
Q ss_pred EcCCCCCCCCCCCCCCceecchhhhcCCCCCCeEEEEcCcHHHHHHHHHHHhC---CCeEEEEeecCccCCCCCHHHHHH
Q 008860 215 ISVGGRPFIPDIPGSEYAIDSDAALDLPSKPEKIAIVGGGYIALEFAGIFSGL---TSEVHVFIRQKKVLRGFDEDIRDF 291 (551)
Q Consensus 215 iAtG~~p~~p~i~g~~~~~~~~~~~~~~~~~~~vvViG~G~~g~e~a~~l~~~---g~~Vtlv~~~~~~l~~~~~~~~~~ 291 (551)
||||++|..|++||.+.++++++++.+...+++++|||+|++|+|+|..|+++ |.+|+++++.+++++.+++++.+.
T Consensus 161 iATGs~p~~p~i~G~~~~~~~~~~~~~~~~~~~vvViGgG~ig~E~A~~l~~~~~~g~~Vtlv~~~~~~l~~~d~~~~~~ 240 (495)
T 2wpf_A 161 LATGSWPQMPAIPGIEHCISSNEAFYLPEPPRRVLTVGGGFISVEFAGIFNAYKPPGGKVTLCYRNNLILRGFDETIREE 240 (495)
T ss_dssp ECCCEEECCCCCTTGGGCEEHHHHTTCSSCCSEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSSSCTTSCHHHHHH
T ss_pred EeCCCCcCCCCCCCccccccHHHHHhhhhcCCeEEEECCCHHHHHHHHHHHhhCCCCCeEEEEEcCCccccccCHHHHHH
Confidence 99999999999999888889999999888899999999999999999999999 999999999999999999999999
Q ss_pred HHHHHHhcCcEEEcCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCcCCCCCCCCccccCeeecCCCCeEeCCCCCC
Q 008860 292 VAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNTKNLGLEKVGVKMTKNGAIEVDEYSGT 371 (551)
Q Consensus 292 l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~t 371 (551)
+.+.|+++||+++++++|++++.++++.+.|.+.+|+++++|.||+|+|++|+++.|.++.++++++++|+|.||+++||
T Consensus 241 l~~~l~~~GV~i~~~~~v~~i~~~~~~~~~v~~~~G~~i~~D~vv~a~G~~p~~~~L~l~~~gl~~~~~G~i~Vd~~~~t 320 (495)
T 2wpf_A 241 VTKQLTANGIEIMTNENPAKVSLNTDGSKHVTFESGKTLDVDVVMMAIGRIPRTNDLQLGNVGVKLTPKGGVQVDEFSRT 320 (495)
T ss_dssp HHHHHHHTTCEEEESCCEEEEEECTTSCEEEEETTSCEEEESEEEECSCEEECCGGGTGGGTTCCBCTTSSBCCCTTCBC
T ss_pred HHHHHHhCCCEEEeCCEEEEEEEcCCceEEEEECCCcEEEcCEEEECCCCcccccccchhhcCccCCCCCCEEECCCCcc
Confidence 99999999999999999999988654447788999989999999999999999986667889999998999999999999
Q ss_pred CCCcEEEeCcCCCCCCChHHHHHhHHHHHHHHcCCCCCCCCCCCccEEEecCCceEEeeCCHHHHHhcCCCeEEEEeecc
Q 008860 372 AVPSIWAVGDVTDRINLTPVALMEGGALAKTLFQAEPTKPDYSAVPSAVFSQPPIGQVGLSEEQAIQEYGDIDVFTANFR 451 (551)
Q Consensus 372 ~~~~vya~GD~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~~~~~~~~~~~~~vGl~~~~a~~~~~~~~~~~~~~~ 451 (551)
+.|+|||+|||++.+++++.|..||+++|.||+|......+|..+|+++|++|+++++|++|++|++.+.++.+...+|.
T Consensus 321 ~~~~IyA~GD~~~~~~l~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~~~~~~~~~a~vGl~e~~a~~~~~~~~v~~~~~~ 400 (495)
T 2wpf_A 321 NVPNIYAIGDITDRLMLTPVAINEGAALVDTVFGNKPRKTDHTRVASAVFSIPPIGTCGLIEEVAAKEFEKVAVYMSSFT 400 (495)
T ss_dssp SSTTEEECGGGGCSCCCHHHHHHHHHHHHHHHHSSCCCCCCCSSCEEEECCSSCEEEEECCHHHHHHHSSEEEEEEEEEC
T ss_pred CCCCEEEEeccCCCccCHHHHHHHHHHHHHHhcCCCCCcCCCCCCCEEEECCCCeEEEeCCHHHHHhcCCCEEEEEEecC
Confidence 99999999999998889999999999999999987655678889999999999999999999999988767888888888
Q ss_pred CcccccccCCCcEE-EEEEEECCCCeEEEEEEECCChhHHHHHHHHHHHCCCCHHHHccCcccCCCchHHHHHHHhhhh
Q 008860 452 PLKATLSGLPDRIF-MKLVLCAKTNKVLGLHMCGEDAPEIVQGFAVAVKAGLTKADFDATVGVHPTAAEEFVTLRTPTR 529 (551)
Q Consensus 452 ~~~~~~~~~~~~~~-~kl~~~~~~~~ilG~~~~g~~~~e~i~~~~~~i~~~~~~~~l~~~~~~~pt~~e~~~~~~~~~~ 529 (551)
+..+++....+.+| +|+++|+++|+|||+|++|+++.|+|+.+++||++++|++||.+++++|||++|++.++....+
T Consensus 401 ~~~~~~~~~~~~~~~~klv~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~~~~~~ 479 (495)
T 2wpf_A 401 PLMHNISGSKYKKFVAKIVTNHSDGTVLGVHLLGDGAPEIIQAVGVCLRLNAKISDFYNTIGVHPTSAEELCSMRTPSY 479 (495)
T ss_dssp CTHHHHHSCTTCCEEEEEEEETTTCBEEEEEEESTTHHHHHHHHHHHHHTTCBHHHHHHSCCCSSCSGGGGGSCCSCSE
T ss_pred chhhhhhcCCCcEEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhcccCCCChHHHHHHHHHHhh
Confidence 88887777778899 9999999999999999999999999999999999999999999999999999999876554333
|
| >3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-73 Score=607.12 Aligned_cols=448 Identities=45% Similarity=0.790 Sum_probs=415.2
Q ss_pred CCccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhhccCCCcc
Q 008860 71 YDFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDESNGFGWK 150 (551)
Q Consensus 71 ~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~ 150 (551)
.+|||+|||||++|+++|++|++.|++|+||| +..+||+|.+.||+|++.++..++....+.....||+.
T Consensus 25 ~~~DVvVIGgG~aGl~aA~~la~~G~~V~liE----------k~~~GG~~~~~gcip~k~l~~~a~~~~~~~~~~~~g~~ 94 (484)
T 3o0h_A 25 FDFDLFVIGSGSGGVRAARLAGALGKRVAIAE----------EYRIGGTCVIRGCVPKKLYFYASQYAQEFSKSIGFGWK 94 (484)
T ss_dssp CSEEEEEECCSHHHHHHHHHHHHTTCCEEEEE----------SSCTTHHHHHHSHHHHHHHHHHHHHHHHHHHHGGGTBC
T ss_pred CCCCEEEECcCHHHHHHHHHHHhCcCEEEEEe----------CCCCCCceeccCccccHHHHHHHHHHHHHHHHHhCCcc
Confidence 36999999999999999999999999999999 67799999999999999999999999999999999887
Q ss_pred cCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEeEEEEecCCEEEE--cCEEEEeCeEEEcCCCCCC-CCCCC
Q 008860 151 YGTEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIEGRGKIVDPHTVDV--DGKLYSARHILISVGGRPF-IPDIP 227 (551)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~i~~~~v~v--~g~~~~~d~lviAtG~~p~-~p~i~ 227 (551)
.. .+.++|..+..+.......+...+...+.+.+++++.+.+.+++++.+.+ +++.+.||++|+|||++|. .|++|
T Consensus 95 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~i~~~~v~v~~~~~~~~~d~lviAtG~~p~~~p~i~ 173 (484)
T 3o0h_A 95 YA-DPIFNWEKLVAAKNKEISRLEGLYREGLQNSNVHIYESRAVFVDEHTLELSVTGERISAEKILIATGAKIVSNSAIK 173 (484)
T ss_dssp CC-CCEECHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESCEEEEETTEEEETTTCCEEEEEEEEECCCEEECCC--CB
T ss_pred cC-CCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEeeCCEEEEecCCeEEEeCEEEEccCCCcccCCCCC
Confidence 54 45789999999998888888888888889999999999999999999999 7789999999999999999 99999
Q ss_pred CCCceecchhhhcCCCCCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCCCCCHHHHHHHHHHHHhcCcEEEcCc
Q 008860 228 GSEYAIDSDAALDLPSKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRDFVAEQMSLRGIEFHTEE 307 (551)
Q Consensus 228 g~~~~~~~~~~~~~~~~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~~~~ 307 (551)
|.+.++++++++.+...+++++|||+|++|+|+|..+++.|.+|+++++.+.+++.+++++.+.+.+.+++.||++++++
T Consensus 174 G~~~~~~~~~~~~~~~~~~~v~ViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~~~~ 253 (484)
T 3o0h_A 174 GSDLCLTSNEIFDLEKLPKSIVIVGGGYIGVEFANIFHGLGVKTTLLHRGDLILRNFDYDLRQLLNDAMVAKGISIIYEA 253 (484)
T ss_dssp TGGGSBCTTTGGGCSSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHHTCEEESSC
T ss_pred CccccccHHHHHhHHhcCCcEEEECcCHHHHHHHHHHHHcCCeEEEEECCCccccccCHHHHHHHHHHHHHCCCEEEeCC
Confidence 99888999999999889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccEEEEEcCCceEEEEECCCeEEEeeEEEEecCcCCCCCCCCccccCeeecCCCCeEeCCCCCCCCCcEEEeCcCCCCCC
Q 008860 308 SPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNTKNLGLEKVGVKMTKNGAIEVDEYSGTAVPSIWAVGDVTDRIN 387 (551)
Q Consensus 308 ~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~t~~~~vya~GD~~~~~~ 387 (551)
+|++++.++++ +.|.+.+|+++++|.||+|+|++|++.+++++..|++++++|+|.||+++||++|+|||+|||++.++
T Consensus 254 ~V~~i~~~~~~-v~v~~~~g~~i~aD~Vi~A~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~t~~~~Iya~GD~~~~~~ 332 (484)
T 3o0h_A 254 TVSQVQSTENC-YNVVLTNGQTICADRVMLATGRVPNTTGLGLERAGVKVNEFGAVVVDEKMTTNVSHIWAVGDVTGHIQ 332 (484)
T ss_dssp CEEEEEECSSS-EEEEETTSCEEEESEEEECCCEEECCTTCCHHHHTCCBCTTSCBCCCTTSBCSSTTEEECGGGGTSCC
T ss_pred EEEEEEeeCCE-EEEEECCCcEEEcCEEEEeeCCCcCCCCCChhhcCceECCCCCEeECCCCCCCCCCEEEEEecCCCCc
Confidence 99999987766 78999999889999999999999999988788899999999999999999999999999999999999
Q ss_pred ChHHHHHhHHHHHHHHcCCCCCCCCCCCccEEEecCCceEEeeCCHHHHHhcCCCeEEEEeeccCcccccccCCCcEEEE
Q 008860 388 LTPVALMEGGALAKTLFQAEPTKPDYSAVPSAVFSQPPIGQVGLSEEQAIQEYGDIDVFTANFRPLKATLSGLPDRIFMK 467 (551)
Q Consensus 388 ~~~~A~~~g~~aa~~i~g~~~~~~~~~~~~~~~~~~~~~~~vGl~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k 467 (551)
+++.|..||+++|+||+|......++..+|+++|++|+++++|++|++|++++.++.++..+|..+.+++..+.+.+|+|
T Consensus 333 ~~~~A~~~g~~aa~~i~~~~~~~~~~~~~p~~~~~~p~~a~vGlte~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~k 412 (484)
T 3o0h_A 333 LTPVAIHDAMCFVKNAFENTSTTPDYDLITTAVFSQPEIGTVGLSEEDALHRYKRVEIYRTVFRPMRNVLSGSPEKMFMK 412 (484)
T ss_dssp CHHHHHHHHHHHHHHHHC---CCCCCTTCCEEECCSSCEEEEECCHHHHHHHCSEEEEEEEEECCHHHHHHTCCCCEEEE
T ss_pred CHHHHHHHHHHHHHHHcCCCCCcCCCCCCcEEEECCCCEEEeeCCHHHHHHcCCCEEEEEecCCcchhhccCCCCcEEEE
Confidence 99999999999999999876666788899999999999999999999999998788888888988888887888899999
Q ss_pred EEEECCCCeEEEEEEECCChhHHHHHHHHHHHCCCCHHHHccCcccCCCchHHHHHHHhhhhh
Q 008860 468 LVLCAKTNKVLGLHMCGEDAPEIVQGFAVAVKAGLTKADFDATVGVHPTAAEEFVTLRTPTRK 530 (551)
Q Consensus 468 l~~~~~~~~ilG~~~~g~~~~e~i~~~~~~i~~~~~~~~l~~~~~~~pt~~e~~~~~~~~~~~ 530 (551)
+++|+++++|||+|++|+++.|+|+.+++||++++|++||.+++++|||++|++.++....+.
T Consensus 413 ~~~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~~~~~~~ 475 (484)
T 3o0h_A 413 LVVDGESRIVVGAHVLGENAGEIAQLIGISLKGKLTKDIFDKTMAVHPTMSEELVTMYKPSYV 475 (484)
T ss_dssp EEEETTTCBEEEEEEESTTHHHHHHHHHHHHHTTCBHHHHHHSCCCSSCSGGGGGCCCSCSEE
T ss_pred EEEECCCCEEEEEEEECcCHHHHHHHHHHHHHCCCCHHHHhccccCCCChHHHHHHHhhhhcc
Confidence 999999999999999999999999999999999999999999999999999998887765543
|
| >1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-73 Score=601.23 Aligned_cols=444 Identities=41% Similarity=0.727 Sum_probs=403.4
Q ss_pred CCCCccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhh-hccCC
Q 008860 69 SHYDFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFD-ESNGF 147 (551)
Q Consensus 69 ~~~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~-~~~~~ 147 (551)
|+.+|||+|||||++|+++|.+|++.|++|+||| +..+||+|.+.||+|++.++..+.....+. +...|
T Consensus 1 M~~~~dvvIIGgG~aGl~aA~~l~~~g~~V~liE----------~~~~GG~~~~~gciP~k~l~~~a~~~~~~~~~~~~~ 70 (450)
T 1ges_A 1 MTKHYDYIAIGGGSGGIASINRAAMYGQKCALIE----------AKELGGTCVNVGCVPKKVMWHAAQIREAIHMYGPDY 70 (450)
T ss_dssp --CEEEEEEECCSHHHHHHHHHHHTTTCCEEEEE----------SSCTTHHHHHHSHHHHHHHHHHHHHHHHHHTTGGGG
T ss_pred CCccCCEEEECCCHHHHHHHHHHHhCCCeEEEEc----------CCCCCCcccccCccChHHHHHHHHHHHHHHHHHHhc
Confidence 3446999999999999999999999999999999 557899999999999999999888777776 66777
Q ss_pred CcccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEeEEEEecCCEEEEcCEEEEeCeEEEcCCCCCCCCCCC
Q 008860 148 GWKYGTEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIEGRGKIVDPHTVDVDGKLYSARHILISVGGRPFIPDIP 227 (551)
Q Consensus 148 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~i~~~~v~v~g~~~~~d~lviAtG~~p~~p~i~ 227 (551)
++... ...++|..+..+..+...++...+...+.+.+++++.+++.+++++++.++++.+.||++|+|||++|..|++|
T Consensus 71 g~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~i~~~~v~~~g~~~~~d~lviAtGs~p~~p~i~ 149 (450)
T 1ges_A 71 GFDTT-INKFNWETLIASRTAYIDRIHTSYENVLGKNNVDVIKGFARFVDAKTLEVNGETITADHILIATGGRPSHPDIP 149 (450)
T ss_dssp TEEEE-EEEECHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESCCEEEETTEEEETTEEEEEEEEEECCCEEECCCCST
T ss_pred CccCC-CCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEecCCEEEECCEEEEeCEEEECCCCCCCCCCCC
Confidence 77543 35678999999888888888888888888899999999988899998888888999999999999999999999
Q ss_pred CCCceecchhhhcCCCCCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCCCCCHHHHHHHHHHHHhcCcEEEcCc
Q 008860 228 GSEYAIDSDAALDLPSKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRDFVAEQMSLRGIEFHTEE 307 (551)
Q Consensus 228 g~~~~~~~~~~~~~~~~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~~~~ 307 (551)
|.+.++++++++.+...+++++|||+|++|+|+|..|+++|.+|+++++.+.+++.+++++.+.+.+.+++.||++++++
T Consensus 150 g~~~~~~~~~~~~~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~~~~ 229 (450)
T 1ges_A 150 GVEYGIDSDGFFALPALPERVAVVGAGYIGVELGGVINGLGAKTHLFEMFDAPLPSFDPMISETLVEVMNAEGPQLHTNA 229 (450)
T ss_dssp TGGGSBCHHHHHHCSSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHHSCEEECSC
T ss_pred CccceecHHHhhhhhhcCCeEEEECCCHHHHHHHHHHHhcCCEEEEEEeCCchhhhhhHHHHHHHHHHHHHCCCEEEeCC
Confidence 98878889999988888999999999999999999999999999999999999998999999999999999999999999
Q ss_pred ccEEEEEcCCceEEEEECCCeEEEeeEEEEecCcCCCCCCCCccccCeeecCCCCeEeCCCCCCCCCcEEEeCcCCCCCC
Q 008860 308 SPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNTKNLGLEKVGVKMTKNGAIEVDEYSGTAVPSIWAVGDVTDRIN 387 (551)
Q Consensus 308 ~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~t~~~~vya~GD~~~~~~ 387 (551)
+|++++.++++.+.|.+.+|+++++|.||+|+|++|+++.|.++.+|++++++|+|.||+++||+.|+|||+|||++.+.
T Consensus 230 ~v~~i~~~~~~~~~v~~~~g~~i~~D~vv~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~~~~t~~~~IyA~GD~~~~~~ 309 (450)
T 1ges_A 230 IPKAVVKNTDGSLTLELEDGRSETVDCLIWAIGREPANDNINLEAAGVKTNEKGYIVVDKYQNTNIEGIYAVGDNTGAVE 309 (450)
T ss_dssp CEEEEEECTTSCEEEEETTSCEEEESEEEECSCEEESCTTSCHHHHTCCBCTTSCBCCCTTSBCSSTTEEECSGGGTSCC
T ss_pred EEEEEEEeCCcEEEEEECCCcEEEcCEEEECCCCCcCCCCCCchhcCceECCCCCEeECCCCccCCCCEEEEeccCCCCc
Confidence 99999886544467889999889999999999999999866678889999989999999999999999999999999889
Q ss_pred ChHHHHHhHHHHHHHHcCCCCCC-CCCCCccEEEecCCceEEeeCCHHHHHhcC--CCeEEEEeeccCcccccccCCCcE
Q 008860 388 LTPVALMEGGALAKTLFQAEPTK-PDYSAVPSAVFSQPPIGQVGLSEEQAIQEY--GDIDVFTANFRPLKATLSGLPDRI 464 (551)
Q Consensus 388 ~~~~A~~~g~~aa~~i~g~~~~~-~~~~~~~~~~~~~~~~~~vGl~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 464 (551)
+++.|.+||+++|.||+|+.... .+|..+|+++|++|+++++|++|++|++.+ .++.++..++....+++..+.+.+
T Consensus 310 ~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~p~~~~~~~~~a~vG~~e~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (450)
T 1ges_A 310 LTPVAVAAGRRLSERLFNNKPDEHLDYSNIPTVVFSHPPIGTVGLTEPQAREQYGDDQVKVYKSSFTAMYTAVTTHRQPC 389 (450)
T ss_dssp CHHHHHHHHHHHHHHHHTTCTTCCCCCSSCCEEECCSSCEEEEECCHHHHHHHHCGGGEEEEEEEEECHHHHTSSSCCEE
T ss_pred cHHHHHHHHHHHHHHHcCCCCcccCCCCCCCeEEECCCceEEEeCCHHHHHhcCCCCcEEEEEEECchhhHHHhcCCCcE
Confidence 99999999999999999865545 678889999999999999999999999874 478888888888888776777889
Q ss_pred EEEEEEECCCCeEEEEEEECCChhHHHHHHHHHHHCCCCHHHHccCcccCCCchHHHHH
Q 008860 465 FMKLVLCAKTNKVLGLHMCGEDAPEIVQGFAVAVKAGLTKADFDATVGVHPTAAEEFVT 523 (551)
Q Consensus 465 ~~kl~~~~~~~~ilG~~~~g~~~~e~i~~~~~~i~~~~~~~~l~~~~~~~pt~~e~~~~ 523 (551)
|+|+++|+++|+|+|+|++|+++.|+|+.+++||++++|++||.+++++|||++|++.+
T Consensus 390 ~~k~~~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~ 448 (450)
T 1ges_A 390 RMKLVCVGSEEKIVGIHGIGFGMDEMLQGFAVALKMGATKKDFDNTVAIHPTAAEEFVT 448 (450)
T ss_dssp EEEEEEETTTTEEEEEEEESTTHHHHHHHHHHHHHTTCBHHHHHTSCCCSSCSGGGGGS
T ss_pred EEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcCccCCCChHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999998654
|
| >3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-73 Score=603.07 Aligned_cols=445 Identities=41% Similarity=0.709 Sum_probs=407.2
Q ss_pred CCCCccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhhccCCC
Q 008860 69 SHYDFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDESNGFG 148 (551)
Q Consensus 69 ~~~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g 148 (551)
++.+|||+|||||++|+++|+.|++.|++|+||| +..+||+|.+.||+|++.++..+.....+.....|+
T Consensus 17 ~~~~~dVvIIGgG~aGl~aA~~la~~G~~V~liE----------~~~~GG~~~~~gc~p~k~l~~~~~~~~~~~~~~~~g 86 (478)
T 3dk9_A 17 AVASYDYLVIGGGSGGLASARRAAELGARAAVVE----------SHKLGGTCVNVGCVPKKVMWNTAVHSEFMHDHADYG 86 (478)
T ss_dssp CEEECSEEEECCSHHHHHHHHHHHHTTCCEEEEE----------SSCTTHHHHHHSHHHHHHHHHHHHHHHHHTTTTTTT
T ss_pred cCCCCCEEEECCCHHHHHHHHHHHhCCCeEEEEe----------cCCCCCcccccCccchHHHHHHHHHHHHHHHHHhcC
Confidence 3446999999999999999999999999999999 668999999999999999999999888888888888
Q ss_pred cccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEeEEEEecCC--EEEEcCEEEEeCeEEEcCCCCCCCC--
Q 008860 149 WKYGTEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIEGRGKIVDPH--TVDVDGKLYSARHILISVGGRPFIP-- 224 (551)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~i~~~--~v~v~g~~~~~d~lviAtG~~p~~p-- 224 (551)
+... ...++|..+..+.....+.+...+...+.+.+++++.+++.++++. .+..+++++.||+||||||++|..|
T Consensus 87 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~~~~~~v~~~g~~~~~d~lviAtG~~p~~p~~ 165 (478)
T 3dk9_A 87 FPSC-EGKFNWRVIKEKRDAYVSRLNAIYQNNLTKSHIEIIRGHAAFTSDPKPTIEVSGKKYTAPHILIATGGMPSTPHE 165 (478)
T ss_dssp SCCC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESCEEECSCSSCEEEETTEEEECSCEEECCCEEECCCCT
T ss_pred ccCC-CCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeEEEEeeCCeEEEEECCEEEEeeEEEEccCCCCCCCCc
Confidence 8754 4678999999999988888888888888889999999999988764 5556888999999999999999999
Q ss_pred -CCCCCCceecchhhhcCCCCCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCCCCCHHHHHHHHHHHHhcCcEE
Q 008860 225 -DIPGSEYAIDSDAALDLPSKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRDFVAEQMSLRGIEF 303 (551)
Q Consensus 225 -~i~g~~~~~~~~~~~~~~~~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i 303 (551)
++||.+.++++++++.+...+++++|||+|++|+|+|..|+++|.+|+++++.+++++.+++++.+.+.+.|++.||++
T Consensus 166 ~~i~G~~~~~~~~~~~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~d~~~~~~~~~~l~~~gv~i 245 (478)
T 3dk9_A 166 SQIPGASLGITSDGFFQLEELPGRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDKVLRSFDSMISTNCTEELENAGVEV 245 (478)
T ss_dssp TTSTTGGGSBCHHHHTTCCSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTTSCHHHHHHHHHHHHHTTCEE
T ss_pred CCCCCCceeEchHHhhchhhcCccEEEECCCHHHHHHHHHHHHcCCeEEEEEeCCccccccCHHHHHHHHHHHHHCCCEE
Confidence 9999888889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCcccEEEEEcCCc-eEEEEECC-------CeEEEeeEEEEecCcCCCCCCCCccccCeeecCCCCeEeCCCCCCCCCc
Q 008860 304 HTEESPQAILKSTDG-SLSVKTNK-------GTVDGFSHVMFATGRRPNTKNLGLEKVGVKMTKNGAIEVDEYSGTAVPS 375 (551)
Q Consensus 304 ~~~~~v~~i~~~~~~-~~~V~~~~-------G~~i~~d~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~t~~~~ 375 (551)
++++.|++++.++++ .+.+.+.+ |+++++|.||+|+|++|+++.|+++..|++++++|+|.||+++||++||
T Consensus 246 ~~~~~v~~i~~~~~~~~~~v~~~~~~~g~~~g~~~~~D~vi~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~t~~~~ 325 (478)
T 3dk9_A 246 LKFSQVKEVKKTLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIGRVPNTKDLSLNKLGIQTDDKGHIIVDEFQNTNVKG 325 (478)
T ss_dssp ETTEEEEEEEECSSSEEEEEEECCTTSCCEEEEEEEESEEEECSCEEESCTTSCGGGGTCCBCTTCCBCCCTTCBCSSTT
T ss_pred EeCCEEEEEEEcCCCcEEEEEEccCCCCcccceEEEcCEEEEeeccccCCCCCCchhcCCeeCCCCCEeeCCCcccCCCC
Confidence 999999999886655 46677765 2679999999999999999977788999999999999999999999999
Q ss_pred EEEeCcCCCCCCChHHHHHhHHHHHHHHcCC-CCCCCCCCCccEEEecCCceEEeeCCHHHHHhcCC--CeEEEEeeccC
Q 008860 376 IWAVGDVTDRINLTPVALMEGGALAKTLFQA-EPTKPDYSAVPSAVFSQPPIGQVGLSEEQAIQEYG--DIDVFTANFRP 452 (551)
Q Consensus 376 vya~GD~~~~~~~~~~A~~~g~~aa~~i~g~-~~~~~~~~~~~~~~~~~~~~~~vGl~~~~a~~~~~--~~~~~~~~~~~ 452 (551)
|||+|||++.+.+++.|..||+++|+||++. .....+|..+|+++|++|+++++|+||+||++++. ++.++..+|.+
T Consensus 326 IyA~GD~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~p~~~~~~p~~a~vGlte~~a~~~~~~~~~~~~~~~~~~ 405 (478)
T 3dk9_A 326 IYAVGDVCGKALLTPVAIAAGRKLAHRLFEYKEDSKLDYNNIPTVVFSHPPIGTVGLTEDEAIHKYGIENVKTYSTSFTP 405 (478)
T ss_dssp EEECGGGGCSSCCHHHHHHHHHHHHHHHHSCCTTCCCCCTTCCEEECCSSCEEEEECCHHHHHHHHCGGGEEEEEEEECC
T ss_pred EEEEEecCCCCccHhHHHHHHHHHHHHHcCCCCcccCCCCCCCeEEECCCceEEeeCCHHHHHhhCCCccEEEEEeecCc
Confidence 9999999998999999999999999999987 34557888999999999999999999999998853 67788888888
Q ss_pred cccccccCCCcEEEEEEEECCCCeEEEEEEECCChhHHHHHHHHHHHCCCCHHHHccCcccCCCchHHHHHH
Q 008860 453 LKATLSGLPDRIFMKLVLCAKTNKVLGLHMCGEDAPEIVQGFAVAVKAGLTKADFDATVGVHPTAAEEFVTL 524 (551)
Q Consensus 453 ~~~~~~~~~~~~~~kl~~~~~~~~ilG~~~~g~~~~e~i~~~~~~i~~~~~~~~l~~~~~~~pt~~e~~~~~ 524 (551)
+.+++..+.+.+|+|+++|+++|+|||+|++|+++.|+|+.+++||++|+|++||.+++++|||++|++.++
T Consensus 406 ~~~~~~~~~~~g~~k~i~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~ 477 (478)
T 3dk9_A 406 MYHAVTKRKTKCVMKMVCANKEEKVVGIHMQGLGCDEMLQGFAVAVKMGATKADFDNTVAIHPTSSEELVTL 477 (478)
T ss_dssp GGGGGCSSCCCEEEEEEEETTTTEEEEEEEESTTHHHHHHHHHHHHHTTCBHHHHHTSCCCSSSSGGGGGSC
T ss_pred chhhhhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhcccCCCChHHHHHhc
Confidence 888877788899999999999999999999999999999999999999999999999999999999987654
|
| >1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-73 Score=603.30 Aligned_cols=456 Identities=41% Similarity=0.713 Sum_probs=411.9
Q ss_pred CccEEEECCChHHHHHHHHHHh-CCCcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhhccCCCcc
Q 008860 72 DFDLFTIGAGSGGVRASRFAAN-FGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDESNGFGWK 150 (551)
Q Consensus 72 ~~dVvIIGgG~aGl~aA~~l~~-~G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~ 150 (551)
+|||+|||||++|+++|++|++ .|++|+|||++... ..+++..+||+|.+.||+|+|.++..+.+.+.+.+...||+.
T Consensus 3 ~~dvvVIGgG~aGl~aA~~la~~~G~~V~liE~~~~~-~~~~~~~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~ 81 (490)
T 1fec_A 3 AYDLVVIGAGSGGLEAGWNAASLHKKRVAVIDLQKHH-GPPHYAALGGTCVNVGCVPKKLMVTGANYMDTIRESAGFGWE 81 (490)
T ss_dssp SEEEEEECCSHHHHHHHHHHHHHHCCCEEEEESCSSS-BTTTBSCTTCHHHHHSHHHHHHHHHHHHHHHHHHHGGGGTEE
T ss_pred cccEEEECCCHHHHHHHHHHHHHcCCEEEEEeccccc-ccccCCCcCccccCCCcchhhHHHHHHHHHHHHHHHHhcCcc
Confidence 6899999999999999999999 99999999932211 222356789999999999999999999988888888888886
Q ss_pred cCCCC--CCChHHHHHHHHHHHHHHHHHHHHHHHhC-CeEEEEeEEEEecCCEEEE------cC---EEEEeCeEEEcCC
Q 008860 151 YGTEP--QHDWSTLIANKNAELQRLTGIYKNILINA-GITLIEGRGKIVDPHTVDV------DG---KLYSARHILISVG 218 (551)
Q Consensus 151 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~i~~~~v~v------~g---~~~~~d~lviAtG 218 (551)
.. .+ .++|..+..+..+....+...+...+++. +++++.+++.+++++++.+ ++ +.+.||+||||||
T Consensus 82 ~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~gv~~~~g~~~~i~~~~v~v~~~~~~~g~~~~~~~~d~lviAtG 160 (490)
T 1fec_A 82 LD-RESVRPNWKALIAAKNKAVSGINDSYEGMFADTEGLTFHQGFGALQDNHTVLVRESADPNSAVLETLDTEYILLATG 160 (490)
T ss_dssp CC-GGGCEECHHHHHHHHHHHHHHHHHHHHHHHHTSTTEEEEESEEEEEETTEEEEESSSSTTSCEEEEEEEEEEEECCC
T ss_pred cC-CcccccCHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEeEEEEeeCCEEEEEeeccCCCCceEEEEcCEEEEeCC
Confidence 43 23 67999999999988888888888888888 9999999999999998888 46 7899999999999
Q ss_pred CCCCCCCCCCCCceecchhhhcCCCCCCeEEEEcCcHHHHHHHHHHHhC---CCeEEEEeecCccCCCCCHHHHHHHHHH
Q 008860 219 GRPFIPDIPGSEYAIDSDAALDLPSKPEKIAIVGGGYIALEFAGIFSGL---TSEVHVFIRQKKVLRGFDEDIRDFVAEQ 295 (551)
Q Consensus 219 ~~p~~p~i~g~~~~~~~~~~~~~~~~~~~vvViG~G~~g~e~a~~l~~~---g~~Vtlv~~~~~~l~~~~~~~~~~l~~~ 295 (551)
++|..|++||.+.++++++++.+...+++++|||+|++|+|+|..|.++ |.+|+++++.+++++.+++++.+.+.+.
T Consensus 161 s~p~~p~i~g~~~~~~~~~~~~~~~~~~~vvViGgG~ig~E~A~~l~~~~~~g~~Vtlv~~~~~~l~~~d~~~~~~l~~~ 240 (490)
T 1fec_A 161 SWPQHLGIEGDDLCITSNEAFYLDEAPKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMILRGFDSELRKQLTEQ 240 (490)
T ss_dssp EEECCCCSBTGGGCBCHHHHTTCSSCCSEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSSSSTTSCHHHHHHHHHH
T ss_pred CCCCCCCCCCccceecHHHHhhhhhcCCeEEEECCCHHHHHHHHHHHhhccCcCeEEEEEcCCCcccccCHHHHHHHHHH
Confidence 9999999999888889999999888899999999999999999999999 9999999999999999999999999999
Q ss_pred HHhcCcEEEcCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCcCCCCCCCCccccCeeecCCCCeEeCCCCCCCCCc
Q 008860 296 MSLRGIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNTKNLGLEKVGVKMTKNGAIEVDEYSGTAVPS 375 (551)
Q Consensus 296 l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~t~~~~ 375 (551)
+++.||+++++++|++++.++++.+.|.+.+|+++++|.||+|+|++|+++.|.++.+|++++++|+|.||+++||+.|+
T Consensus 241 l~~~GV~i~~~~~v~~i~~~~~~~~~v~~~~G~~i~~D~vv~a~G~~p~~~~L~l~~~gl~~~~~G~I~Vd~~~~t~~~~ 320 (490)
T 1fec_A 241 LRANGINVRTHENPAKVTKNADGTRHVVFESGAEADYDVVMLAIGRVPRSQTLQLEKAGVEVAKNGAIKVDAYSKTNVDN 320 (490)
T ss_dssp HHHTTEEEEETCCEEEEEECTTSCEEEEETTSCEEEESEEEECSCEEESCTTSCGGGGTCCBCTTSCBCCCTTCBCSSTT
T ss_pred HHhCCCEEEeCCEEEEEEEcCCCEEEEEECCCcEEEcCEEEEccCCCcCccccCchhcCccCCCCCCEEECCCCccCCCC
Confidence 99999999999999999886554477889999889999999999999999866678899999989999999999999999
Q ss_pred EEEeCcCCCCCCChHHHHHhHHHHHHHHcCCCCCCCCCCCccEEEecCCceEEeeCCHHHHHhcCCCeEEEEeeccCccc
Q 008860 376 IWAVGDVTDRINLTPVALMEGGALAKTLFQAEPTKPDYSAVPSAVFSQPPIGQVGLSEEQAIQEYGDIDVFTANFRPLKA 455 (551)
Q Consensus 376 vya~GD~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~~~~~~~~~~~~~vGl~~~~a~~~~~~~~~~~~~~~~~~~ 455 (551)
|||+|||++.+++++.|.+||+++|.||+|......+|..+|+++|++|+++++|++|++|++.+.++.+...+|.++.+
T Consensus 321 IyA~GD~~~~~~l~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~~~~~~~~~a~vG~~e~~a~~~~~~~~~~~~~~~~~~~ 400 (490)
T 1fec_A 321 IYAIGDVTDRVMLTPVAINEGAAFVDTVFANKPRATDHTKVACAVFSIPPMGVCGYVEEDAAKKYDQVAVYESSFTPLMH 400 (490)
T ss_dssp EEECGGGGCSCCCHHHHHHHHHHHHHHHHSSCCCCCCCSSCCEEECCSSCEEEEECCHHHHHHHCSEEEEEEEEECCHHH
T ss_pred EEEEeccCCCccCHHHHHHHHHHHHHHhcCCCCCcCCCCCccEEEECCCCeEEEeCCHHHHHhcCCCEEEEEeecChhhh
Confidence 99999999988999999999999999999876566788899999999999999999999999887678888888888887
Q ss_pred ccccCCCcEEE-EEEEECCCCeEEEEEEECCChhHHHHHHHHHHHCCCCHHHHccCcccCCCchHHHHHHHhhhh
Q 008860 456 TLSGLPDRIFM-KLVLCAKTNKVLGLHMCGEDAPEIVQGFAVAVKAGLTKADFDATVGVHPTAAEEFVTLRTPTR 529 (551)
Q Consensus 456 ~~~~~~~~~~~-kl~~~~~~~~ilG~~~~g~~~~e~i~~~~~~i~~~~~~~~l~~~~~~~pt~~e~~~~~~~~~~ 529 (551)
++....+.+|+ |+++|+++|+|||+|++|+++.|+|+.+++||++++|++||.+++++|||++|++.++....+
T Consensus 401 ~~~~~~~~~~~~kli~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~~~~~~ 475 (490)
T 1fec_A 401 NISGSTYKKFMVRIVTNHADGEVLGVHMLGDSSPEIIQSVAICLKMGAKISDFYNTIGVHPTSAEELCSMRTPAY 475 (490)
T ss_dssp HHHSCTTCCEEEEEEEETTTTEEEEEEEESTTHHHHHHHHHHHHHTTCBHHHHHTSCCCSSCSGGGGGSCCSCSE
T ss_pred hhhcCCCeEEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhccccCCCCHHHHHHHHHHHHh
Confidence 77777788999 999999999999999999999999999999999999999999999999999999876554333
|
| >2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-72 Score=592.52 Aligned_cols=445 Identities=41% Similarity=0.751 Sum_probs=405.3
Q ss_pred CCCCccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhhccCCC
Q 008860 69 SHYDFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDESNGFG 148 (551)
Q Consensus 69 ~~~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g 148 (551)
|+.+|||+|||||++|+++|.+|++.|++|+||| +..+||+|.+.||+|++.++..+.....+.+...|+
T Consensus 1 M~~~~dVvIIGgG~aGl~aA~~l~~~g~~V~liE----------~~~~GG~~~~~gciP~k~l~~~a~~~~~~~~~~~~g 70 (463)
T 2r9z_A 1 MTQHFDLIAIGGGSGGLAVAEKAAAFGKRVALIE----------SKALGGTCVNVGCVPKKVMWYASHLAEAVRDAPGFG 70 (463)
T ss_dssp -CCCEEEEEECCSHHHHHHHHHHHHTTCCEEEEE----------SSCTTHHHHHHSHHHHHHHHHHHHHHHHHHHGGGGT
T ss_pred CCccCcEEEECCCHHHHHHHHHHHhCCCcEEEEc----------CCCCCCcCcCcCchhHHHHHHHHHHHHHHhhhhhcC
Confidence 3457999999999999999999999999999999 557899999999999999999888887777777787
Q ss_pred cccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEeEEEEecCCEEEEcCEEEEeCeEEEcCCCCCCCCCCCC
Q 008860 149 WKYGTEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIEGRGKIVDPHTVDVDGKLYSARHILISVGGRPFIPDIPG 228 (551)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~i~~~~v~v~g~~~~~d~lviAtG~~p~~p~i~g 228 (551)
+... ...++|..+..+..+.++.+...+...+.+.+++++.+++.+++++++.++++.+.||++|+|||++|..|++||
T Consensus 71 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~i~~~~v~~~g~~~~~d~lviAtGs~p~~p~i~G 149 (463)
T 2r9z_A 71 VQAS-GGTLDWPRLVAGRDRYIGAINSFWDGYVERLGITRVDGHARFVDAHTIEVEGQRLSADHIVIATGGRPIVPRLPG 149 (463)
T ss_dssp BCCC----CCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESCEEEEETTEEEETTEEEEEEEEEECCCEEECCCSCTT
T ss_pred cccC-CCCcCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEeEEEEccCCEEEECCEEEEcCEEEECCCCCCCCCCCCC
Confidence 7643 356899999999888888888888888888999999999888999988888889999999999999999999999
Q ss_pred CCceecchhhhcCCCCCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCCCCCHHHHHHHHHHHHhcCcEEEcCcc
Q 008860 229 SEYAIDSDAALDLPSKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRDFVAEQMSLRGIEFHTEES 308 (551)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~~~~~ 308 (551)
.+.++++++++.+...+++++|||+|++|+|+|..|+++|.+|+++++.+.+++.+++++.+.+.+.+++.||+++++++
T Consensus 150 ~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~A~~l~~~G~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~gv~i~~~~~ 229 (463)
T 2r9z_A 150 AELGITSDGFFALQQQPKRVAIIGAGYIGIELAGLLRSFGSEVTVVALEDRLLFQFDPLLSATLAENMHAQGIETHLEFA 229 (463)
T ss_dssp GGGSBCHHHHHHCSSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHTTCEEESSCC
T ss_pred ccceecHHHHhhhhccCCEEEEECCCHHHHHHHHHHHhcCCEEEEEEcCCccccccCHHHHHHHHHHHHHCCCEEEeCCE
Confidence 87788899998888889999999999999999999999999999999999999889999999999999999999999999
Q ss_pred cEEEEEcCCceEEEEECCCe-EEEeeEEEEecCcCCCCCCCCccccCeeecCCCCeEeCCCCCCCCCcEEEeCcCCCCCC
Q 008860 309 PQAILKSTDGSLSVKTNKGT-VDGFSHVMFATGRRPNTKNLGLEKVGVKMTKNGAIEVDEYSGTAVPSIWAVGDVTDRIN 387 (551)
Q Consensus 309 v~~i~~~~~~~~~V~~~~G~-~i~~d~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~t~~~~vya~GD~~~~~~ 387 (551)
|++++.++++ +.|.+.+|+ ++++|.||+|+|++|+++.|.++.++++++++|+|.||+++||+.|+|||+|||++.+.
T Consensus 230 v~~i~~~~~~-~~v~~~~G~~~i~~D~vv~a~G~~p~~~~l~~~~~g~~~~~~G~i~vd~~~~t~~~~Iya~GD~~~~~~ 308 (463)
T 2r9z_A 230 VAALERDAQG-TTLVAQDGTRLEGFDSVIWAVGRAPNTRDLGLEAAGIEVQSNGMVPTDAYQNTNVPGVYALGDITGRDQ 308 (463)
T ss_dssp EEEEEEETTE-EEEEETTCCEEEEESEEEECSCEEESCTTSCHHHHTCCCCTTSCCCCCTTSBCSSTTEEECGGGGTSCC
T ss_pred EEEEEEeCCe-EEEEEeCCcEEEEcCEEEECCCCCcCCCCCCchhcCCccCCCCCEeECCCCccCCCCEEEEeecCCCcc
Confidence 9999876655 778899998 89999999999999999866567889999989999999999999999999999999889
Q ss_pred ChHHHHHhHHHHHHHHcCCCCCC-CCCCCccEEEecCCceEEeeCCHHHHHhcC-CCeEEEEeeccCcccccccCCCcEE
Q 008860 388 LTPVALMEGGALAKTLFQAEPTK-PDYSAVPSAVFSQPPIGQVGLSEEQAIQEY-GDIDVFTANFRPLKATLSGLPDRIF 465 (551)
Q Consensus 388 ~~~~A~~~g~~aa~~i~g~~~~~-~~~~~~~~~~~~~~~~~~vGl~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (551)
+++.|..||+++|.||+|..... .+|..+|+++|++|+++++|++|++|++++ .++.+...++.+..+++..+.+.+|
T Consensus 309 ~~~~A~~~g~~aa~~i~g~~~~~~~~~~~~p~~~~~~~~~a~vGl~e~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (463)
T 2r9z_A 309 LTPVAIAAGRRLAERLFDGQSERKLDYDNIPTVVFAHPPLSKVGLSEPEARERLGDVLTVYETSFTPMRYALNEHGPKTA 388 (463)
T ss_dssp CHHHHHHHHHHHHHHHHSCCTTCCCCCSSCCEEECCSSCEEEEECCHHHHHHHHCSCEEEEEEEECCGGGTTSSSCCCEE
T ss_pred cHHHHHHHHHHHHHHHcCCCCcccCCCCCCCEEEeCCCCeEEEcCCHHHHHhcCCCCEEEEEEEcccchhhhhcCCCcEE
Confidence 99999999999999999866544 678899999999999999999999999874 5788888888888888777788899
Q ss_pred EEEEEECCCCeEEEEEEECCChhHHHHHHHHHHHCCCCHHHHccCcccCCCchHHHHHHH
Q 008860 466 MKLVLCAKTNKVLGLHMCGEDAPEIVQGFAVAVKAGLTKADFDATVGVHPTAAEEFVTLR 525 (551)
Q Consensus 466 ~kl~~~~~~~~ilG~~~~g~~~~e~i~~~~~~i~~~~~~~~l~~~~~~~pt~~e~~~~~~ 525 (551)
+|+++|+++++|+|+|++|+++.|+|+.+++||++++|++||.+++++|||++|++.++.
T Consensus 389 ~klv~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~~ 448 (463)
T 2r9z_A 389 MKLVCAGPEQRVVGVHVIGDGADEMLQGFAVAVKMGATKADFDNTVAIHPGSAEELVTLK 448 (463)
T ss_dssp EEEEEETTTTEEEEEEEESTTGGGTSHHHHHHHHTTCBHHHHHTSCCCSSSSGGGGGCCC
T ss_pred EEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcCccCCCCHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999977644
|
| >3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-72 Score=598.14 Aligned_cols=455 Identities=38% Similarity=0.635 Sum_probs=400.3
Q ss_pred CCccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhhccCCCcc
Q 008860 71 YDFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDESNGFGWK 150 (551)
Q Consensus 71 ~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~ 150 (551)
.+|||+|||||+||++||..|++.|++|+|||+.... +......+||+|.+.||+|++.++..++....+.....||+.
T Consensus 5 ~~~DvvVIG~G~aGl~aA~~la~~G~~V~liEk~~~~-~~~~~~~~GGtc~~~gciPsk~l~~~~~~~~~~~~~~~~g~~ 83 (488)
T 3dgz_A 5 QSFDLLVIGGGSGGLACAKEAAQLGKKVAVADYVEPS-PRGTKWGLGGTCVNVGCIPKKLMHQAALLGGMIRDAHHYGWE 83 (488)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHHTTCCEEEECCCCCC-TTSCCCCTTCHHHHHSHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred CcCCEEEECCCHHHHHHHHHHHhCCCeEEEEEecccc-cccccCCcCCeecccCCcccHHHHHHHHHHHHHHHHHhcCcc
Confidence 4699999999999999999999999999999931000 011145699999999999999999999988888889999988
Q ss_pred cCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEeEEEEecCCEEEE---cC--EEEEeCeEEEcCCCCCCCCC
Q 008860 151 YGTEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIEGRGKIVDPHTVDV---DG--KLYSARHILISVGGRPFIPD 225 (551)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~i~~~~v~v---~g--~~~~~d~lviAtG~~p~~p~ 225 (551)
......++|..+..+.....+.+...+...+.+.+++++.+.+.+++++.+.+ ++ ..+.||+||||||++|..|+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~g~~~~~~~~~v~v~~~~g~~~~~~~d~lViATGs~p~~p~ 163 (488)
T 3dgz_A 84 VAQPVQHNWKTMAEAVQNHVKSLNWGHRVQLQDRKVKYFNIKASFVDEHTVRGVDKGGKATLLSAEHIVIATGGRPRYPT 163 (488)
T ss_dssp CCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECCEEEESSSSEEEEECTTSCEEEEEEEEEEECCCEEECCCS
T ss_pred cCCcCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCeEEEEeCCCceEEEECCEEEEcCCCCCCCCC
Confidence 76667899999999998888888888888888899999999999999998888 34 58999999999999999998
Q ss_pred -CCCC-CceecchhhhcCCCCCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCCCCCHHHHHHHHHHHHhcCcEE
Q 008860 226 -IPGS-EYAIDSDAALDLPSKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRDFVAEQMSLRGIEF 303 (551)
Q Consensus 226 -i~g~-~~~~~~~~~~~~~~~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i 303 (551)
+||. +..+++++++.+...+++++|||+|++|+|+|..|+++|.+|+++++. .+++.+++++.+.+.+.|++.||++
T Consensus 164 ~i~G~~~~~~~~~~~~~~~~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~-~~l~~~d~~~~~~l~~~l~~~gv~~ 242 (488)
T 3dgz_A 164 QVKGALEYGITSDDIFWLKESPGKTLVVGASYVALECAGFLTGIGLDTTVMMRS-IPLRGFDQQMSSLVTEHMESHGTQF 242 (488)
T ss_dssp SCBTHHHHCBCHHHHTTCSSCCCSEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CSSTTSCHHHHHHHHHHHHHTTCEE
T ss_pred CCCCcccccCcHHHHHhhhhcCCeEEEECCCHHHHHHHHHHHHcCCceEEEEcC-cccccCCHHHHHHHHHHHHHCCCEE
Confidence 9997 456788999998888999999999999999999999999999999986 4678899999999999999999999
Q ss_pred EcCcccEEEEEcCCceEEEEECC---Ce--EEEeeEEEEecCcCCCCCCCCccccCeeec-CCCCeEeCCCCCCCCCcEE
Q 008860 304 HTEESPQAILKSTDGSLSVKTNK---GT--VDGFSHVMFATGRRPNTKNLGLEKVGVKMT-KNGAIEVDEYSGTAVPSIW 377 (551)
Q Consensus 304 ~~~~~v~~i~~~~~~~~~V~~~~---G~--~i~~d~vi~a~G~~p~~~~l~l~~~gl~~~-~~G~i~vd~~~~t~~~~vy 377 (551)
++++.++++...+++.+.+.+.+ |+ ++++|.|++|+|++|++++++++..+++++ ++|+|.||+++||++||||
T Consensus 243 ~~~~~v~~i~~~~~~~~~v~~~~~~~g~~~~~~~D~vi~a~G~~p~~~~l~l~~~g~~~~~~~G~i~vd~~~~t~~~~Iy 322 (488)
T 3dgz_A 243 LKGCVPSHIKKLPTNQLQVTWEDHASGKEDTGTFDTVLWAIGRVPETRTLNLEKAGISTNPKNQKIIVDAQEATSVPHIY 322 (488)
T ss_dssp EETEEEEEEEECTTSCEEEEEEETTTTEEEEEEESEEEECSCEEESCGGGTGGGGTCCBCSSSCCBCCCTTSBCSSTTEE
T ss_pred EeCCEEEEEEEcCCCcEEEEEEeCCCCeeEEEECCEEEEcccCCcccCcCCccccCcEecCCCCeEeECCCCccCCCCEE
Confidence 99999999987544435566543 55 479999999999999999887889999998 7899999999999999999
Q ss_pred EeCcCC-CCCCChHHHHHhHHHHHHHHcCCCCCCCCCCCccEEEecCCceEEeeCCHHHHHhcC--CCeEEEEeeccCcc
Q 008860 378 AVGDVT-DRINLTPVALMEGGALAKTLFQAEPTKPDYSAVPSAVFSQPPIGQVGLSEEQAIQEY--GDIDVFTANFRPLK 454 (551)
Q Consensus 378 a~GD~~-~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~~~~~~~~~~~~~vGl~~~~a~~~~--~~~~~~~~~~~~~~ 454 (551)
|+|||+ +.+.+++.|..||+++|+||++......++..+|+++|++|+++++|+||+||++++ ..+.++...|.+..
T Consensus 323 A~GD~~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~~~~~~p~~a~vGlte~~a~~~~~~~~~~~~~~~~~~~~ 402 (488)
T 3dgz_A 323 AIGDVAEGRPELTPTAIKAGKLLAQRLFGKSSTLMDYSNVPTTVFTPLEYGCVGLSEEEAVALHGQEHVEVYHAYYKPLE 402 (488)
T ss_dssp ECGGGBTTCCCCHHHHHHHHHHHHHHHHSCCCCCCCCTTCCEEECSSSEEEEEECCHHHHHHHHCGGGEEEEEEECCCHH
T ss_pred EeEEecCCCCcchhHHHHHHHHHHHHHcCCCCccCCCCCCCEEEECCCCeEEEeCCHHHHHhhCCCCcEEEEEccccchh
Confidence 999998 568899999999999999999877666788899999999999999999999999873 35777776676665
Q ss_pred cccccC-CCcEEEEEEEE-CCCCeEEEEEEECCChhHHHHHHHHHHHCCCCHHHHccCcccCCCchHHHHHHHhh
Q 008860 455 ATLSGL-PDRIFMKLVLC-AKTNKVLGLHMCGEDAPEIVQGFAVAVKAGLTKADFDATVGVHPTAAEEFVTLRTP 527 (551)
Q Consensus 455 ~~~~~~-~~~~~~kl~~~-~~~~~ilG~~~~g~~~~e~i~~~~~~i~~~~~~~~l~~~~~~~pt~~e~~~~~~~~ 527 (551)
++.... .+.+|+||++| +++|+|||+|++|+++.|+|+.+++||++++|++||.+++++|||++|++.+++..
T Consensus 403 ~~~~~~~~~~g~~k~i~~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~~~~ 477 (488)
T 3dgz_A 403 FTVADRDASQCYIKMVCMREPPQLVLGLHFLGPNAGEVTQGFALGIKCGASYAQVMQTVGIHPTCSEEVVKLHIS 477 (488)
T ss_dssp HHHTTCCCTTCEEEEEEESSTTCBEEEEEEEETTHHHHHHHHHHHHHTTCBHHHHHTSCCCSSCSTHHHHTCCEE
T ss_pred hhhhccCCCcEEEEEEEecCCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhccccCCCChHHHHHHHHHH
Confidence 543332 36899999999 58999999999999999999999999999999999999999999999999887533
|
| >3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-72 Score=598.04 Aligned_cols=450 Identities=25% Similarity=0.348 Sum_probs=403.5
Q ss_pred CccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhhccCCCccc
Q 008860 72 DFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDESNGFGWKY 151 (551)
Q Consensus 72 ~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~~ 151 (551)
+|||+|||||+||++||.+|++.|++|+||| +..+||+|.|+||+|+|.++..++....+.+++.||+..
T Consensus 8 ~~DvvVIGgG~aGl~aA~~la~~G~~V~liE----------~~~~GGtc~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~ 77 (492)
T 3ic9_A 8 NVDVAIIGTGTAGMGAYRAAKKHTDKVVLIE----------GGAYGTTCARVGCMPSKLLIAAADASYHASQTDLFGIQV 77 (492)
T ss_dssp EEEEEEECCSHHHHHHHHHHHTTCSCEEEEE----------SSCSSCHHHHHSHHHHHHHHHHHHHHHHHTCGGGGTEEC
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCcEEEEe----------CCCCCCcccccChhcCHHHHHHHHHHHHHhhhhhcCcCC
Confidence 5999999999999999999999999999999 566999999999999999999999988888899888863
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhC-CeEEEEeEEEEecCCEEEE-cCEEEEeCeEEEcCCCCCCCCCCCCC
Q 008860 152 GTEPQHDWSTLIANKNAELQRLTGIYKNILINA-GITLIEGRGKIVDPHTVDV-DGKLYSARHILISVGGRPFIPDIPGS 229 (551)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~i~~~~v~v-~g~~~~~d~lviAtG~~p~~p~i~g~ 229 (551)
....++|..+..+.....+.+...+...+... +++++.+.+.+.+++++.+ +++.+.||++|||||++|..|++++.
T Consensus 78 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~a~~~~~~~v~~~~~~~~~~d~lViATGs~p~~p~~~~~ 156 (492)
T 3ic9_A 78 -DRISVNGKAVMKRIQTERDRFVGFVVESVESFDEQDKIRGFAKFLDEHTLQVDDHSQVIAKRIVIATGSRPNYPEFLAA 156 (492)
T ss_dssp -SEEEECHHHHHHHHHHHHHHHHHHHHHHHHHSCGGGEEESCEEEEETTEEEETTTEEEEEEEEEECCCEECCCCHHHHT
T ss_pred -CCCccCHHHHHHHHHHHHHHHHHHHHHHHHhhcCeeEEEEEEEEecCCEEEEcCCcEEEeCEEEEccCCCCcCCCCCCc
Confidence 24568899988888777776665555544443 6778999999999999999 88999999999999999999886653
Q ss_pred --CceecchhhhcCCCCCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCCCCCHHHHHHHHHHHHhcCcEEEcCc
Q 008860 230 --EYAIDSDAALDLPSKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRDFVAEQMSLRGIEFHTEE 307 (551)
Q Consensus 230 --~~~~~~~~~~~~~~~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~~~~ 307 (551)
..++++++++.+...+++++|||+|++|+|+|..|+++|.+|+++++.+++++.+++++.+.+.+.|++. |++++++
T Consensus 157 ~~~~v~t~~~~~~~~~~~k~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~~d~~~~~~l~~~l~~~-V~i~~~~ 235 (492)
T 3ic9_A 157 AGSRLLTNDNLFELNDLPKSVAVFGPGVIGLELGQALSRLGVIVKVFGRSGSVANLQDEEMKRYAEKTFNEE-FYFDAKA 235 (492)
T ss_dssp TGGGEECHHHHTTCSSCCSEEEEESSCHHHHHHHHHHHHTTCEEEEECCTTCCTTCCCHHHHHHHHHHHHTT-SEEETTC
T ss_pred cCCcEEcHHHHhhhhhcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEECCcccccCCHHHHHHHHHHHhhC-cEEEECC
Confidence 4688999999998899999999999999999999999999999999999999989999999999999988 9999999
Q ss_pred ccEEEEEcCCceEEEEEC--CC--eEEEeeEEEEecCcCCCCCCCCccccCeeecCCCCeEeC-CCCCCCCCcEEEeCcC
Q 008860 308 SPQAILKSTDGSLSVKTN--KG--TVDGFSHVMFATGRRPNTKNLGLEKVGVKMTKNGAIEVD-EYSGTAVPSIWAVGDV 382 (551)
Q Consensus 308 ~v~~i~~~~~~~~~V~~~--~G--~~i~~d~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd-~~~~t~~~~vya~GD~ 382 (551)
.|++++.++++ +.+.+. +| +++++|.||+|+|++|++++++++.++++++++|+|.|| +++||+.|+|||+|||
T Consensus 236 ~v~~i~~~~~~-v~v~~~~~~G~~~~i~~D~Vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~~t~~~~IyA~GD~ 314 (492)
T 3ic9_A 236 RVISTIEKEDA-VEVIYFDKSGQKTTESFQYVLAATGRKANVDKLGLENTSIELDKKNSPLFDELTLQTSVDHIFVAGDA 314 (492)
T ss_dssp EEEEEEECSSS-EEEEEECTTCCEEEEEESEEEECSCCEESCSSSCGGGSCCCBCTTCCBCCCTTTCBCSSTTEEECGGG
T ss_pred EEEEEEEcCCE-EEEEEEeCCCceEEEECCEEEEeeCCccCCCCCChhhcCCEECCCCCEeECcccccCCCCCEEEEEec
Confidence 99999987766 667664 67 679999999999999999998889999999999999999 9999999999999999
Q ss_pred CCCCCChHHHHHhHHHHHHHHcCC-CCCCCCCCCccEEEecCCceEEeeCCHHHHHhcC-----CCeEEEEeeccCcccc
Q 008860 383 TDRINLTPVALMEGGALAKTLFQA-EPTKPDYSAVPSAVFSQPPIGQVGLSEEQAIQEY-----GDIDVFTANFRPLKAT 456 (551)
Q Consensus 383 ~~~~~~~~~A~~~g~~aa~~i~g~-~~~~~~~~~~~~~~~~~~~~~~vGl~~~~a~~~~-----~~~~~~~~~~~~~~~~ 456 (551)
++.+++++.|..||++||.||++. .....++..+|+++|++|+++++|+||+||++++ .++.+...+|..+.++
T Consensus 315 ~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~p~~~~~~p~~a~vGlte~~a~~~~g~~~g~~~~~~~~~~~~~~~a 394 (492)
T 3ic9_A 315 NNTLTLLHEAADDGKVAGTNAGAYPVIAQGQRRAPLSVVFTEPQVASVGLSLRQIEDLYADQDAANYVVGQVSFEGQGRS 394 (492)
T ss_dssp GTSSCSHHHHHHHHHHHHHHHHHTTSCCEECCCCCEEEECSSSEEEEEESCHHHHHHHCSCSSSCCEEEEEEEGGGCHHH
T ss_pred CCCCccHHHHHHHHHHHHHHHcCCCCCcccCCCCCcEEEECCCCeEEecCCHHHHHhccCccCCccEEEEEEEeccchhh
Confidence 999999999999999999999973 3344567889999999999999999999999985 4788888889888888
Q ss_pred cccCCCcEEEEEEEECCCCeEEEEEEECCChhHHHHHHHHHHHCCCCHHHHccCcccCCCchHHHHHH-HhhhhhhcCC
Q 008860 457 LSGLPDRIFMKLVLCAKTNKVLGLHMCGEDAPEIVQGFAVAVKAGLTKADFDATVGVHPTAAEEFVTL-RTPTRKIRKS 534 (551)
Q Consensus 457 ~~~~~~~~~~kl~~~~~~~~ilG~~~~g~~~~e~i~~~~~~i~~~~~~~~l~~~~~~~pt~~e~~~~~-~~~~~~~~~~ 534 (551)
...+.+.+|+|+++|+++|+|||+|++|+++.|+|+.+++||++++|++||.+++++|||++|++.++ ....++++..
T Consensus 395 ~~~~~~~g~~kli~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~a~~~~~~~~~~~ 473 (492)
T 3ic9_A 395 RVMGKNKGLLNVYADRTSGEFLGAEMFGPAAEHIGHLLAWARQQQMTVQAMLTMPFYHPVIEEGLRTALRDAQQKLAIE 473 (492)
T ss_dssp HHTTCCCCEEEEEEETTTCBEEEEEEEETTHHHHHHHHHHHHHTTCBHHHHTTSCCCTTCTHHHHHHHHHHHHHTSSSC
T ss_pred hhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhCCCCCCChHHHHHHHHHHHHHHhhcc
Confidence 77788889999999999999999999999999999999999999999999999999999999999884 4455555543
|
| >3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-72 Score=595.68 Aligned_cols=453 Identities=38% Similarity=0.647 Sum_probs=399.1
Q ss_pred CCccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhhccCCCcc
Q 008860 71 YDFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDESNGFGWK 150 (551)
Q Consensus 71 ~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~ 150 (551)
.+|||+|||||+||++||.+|++.|++|+|||+............+||+|.+.||+|++.++..++....+.....||+.
T Consensus 8 ~~~DvvVIGgG~aGl~aA~~la~~G~~V~liEk~~~~~~~~~~~~~GG~c~~~gciPsk~l~~~~~~~~~~~~~~~~g~~ 87 (483)
T 3dgh_A 8 YDYDLIVIGGGSAGLACAKEAVLNGARVACLDFVKPTPTLGTKWGVGGTCVNVGCIPKKLMHQASLLGEAVHEAAAYGWN 87 (483)
T ss_dssp CSEEEEEECCSHHHHHHHHHHHHTTCCEEEECCCCCCTTTTCCCCSSCHHHHHSHHHHHHHHHHHHHHHHHHHHHHTTBC
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCEEEEEEeccccccccccCCcCCeecccCchhhHHHHHHHHHHHHHHHHHhcCcc
Confidence 46999999999999999999999999999999311110011123599999999999999999999988888888899988
Q ss_pred cCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEeEEEEecCCEEEE---cC-EEEEeCeEEEcCCCCCCCCCC
Q 008860 151 YGTEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIEGRGKIVDPHTVDV---DG-KLYSARHILISVGGRPFIPDI 226 (551)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~i~~~~v~v---~g-~~~~~d~lviAtG~~p~~p~i 226 (551)
......++|..+..+....++.+...+...+...+++++.+.+.+++++.+.+ ++ ..+.||+||||||++|..|++
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a~~~~~~~v~v~~~~g~~~~~~d~lviATGs~p~~p~i 167 (483)
T 3dgh_A 88 VDDKIKPDWHKLVQSVQNHIKSVNWVTRVDLRDKKVEYINGLGSFVDSHTLLAKLKSGERTITAQTFVIAVGGRPRYPDI 167 (483)
T ss_dssp CCCCCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECSEEEEEETTEEEEECTTCCEEEEEEEEEECCCEEECCCSS
T ss_pred cCCcCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEccCCEEEEEeCCCeEEEEcCEEEEeCCCCcCCCCC
Confidence 77667889999999999888888877777888899999999999999998888 34 579999999999999999999
Q ss_pred CCC-CceecchhhhcCCCCCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCCCCCHHHHHHHHHHHHhcCcEEEc
Q 008860 227 PGS-EYAIDSDAALDLPSKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRDFVAEQMSLRGIEFHT 305 (551)
Q Consensus 227 ~g~-~~~~~~~~~~~~~~~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~~ 305 (551)
||. +..+++++++.+...+++++|||+|++|+|+|..|+++|.+|+++++ +.+++.+++++.+.+.+.|++.||++++
T Consensus 168 ~G~~~~~~~~~~~~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~-~~~l~~~d~~~~~~l~~~l~~~Gv~i~~ 246 (483)
T 3dgh_A 168 PGAVEYGITSDDLFSLDREPGKTLVVGAGYIGLECAGFLKGLGYEPTVMVR-SIVLRGFDQQMAELVAASMEERGIPFLR 246 (483)
T ss_dssp TTHHHHCBCHHHHTTCSSCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEES-SCSSTTSCHHHHHHHHHHHHHTTCCEEE
T ss_pred CCcccccCcHHHHhhhhhcCCcEEEECCCHHHHHHHHHHHHcCCEEEEEeC-CCCCcccCHHHHHHHHHHHHhCCCEEEe
Confidence 997 45678899998888899999999999999999999999999999998 5678889999999999999999999999
Q ss_pred CcccEEEEEcCCceEEEEECCCe-----EEEeeEEEEecCcCCCCCCCCccccCeeecCCCCeEeCCCCCCCCCcEEEeC
Q 008860 306 EESPQAILKSTDGSLSVKTNKGT-----VDGFSHVMFATGRRPNTKNLGLEKVGVKMTKNGAIEVDEYSGTAVPSIWAVG 380 (551)
Q Consensus 306 ~~~v~~i~~~~~~~~~V~~~~G~-----~i~~d~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~t~~~~vya~G 380 (551)
++.|++++.++++.+.|++.+++ ++++|.|++|+|++|++++++++..++++++ |+|.||+++||++|+|||+|
T Consensus 247 ~~~v~~i~~~~~~~~~v~~~~~~~~~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~-G~i~vd~~~~t~~~~IyA~G 325 (483)
T 3dgh_A 247 KTVPLSVEKQDDGKLLVKYKNVETGEESEDVYDTVLWAIGRKGLVDDLNLPNAGVTVQK-DKIPVDSQEATNVANIYAVG 325 (483)
T ss_dssp TEEEEEEEECTTSCEEEEEEETTTCCEEEEEESEEEECSCEEECCGGGTGGGTTCCCBT-TBBCCCTTCBCSSTTEEECS
T ss_pred CCEEEEEEEcCCCcEEEEEecCCCCceeEEEcCEEEECcccccCcCcCCchhcCccccC-CEEEECcCCccCCCCEEEEE
Confidence 99999998865544667766543 7999999999999999998777899999998 99999999999999999999
Q ss_pred cCC-CCCCChHHHHHhHHHHHHHHcCCCCCCCCCCCccEEEecCCceEEeeCCHHHHHhcC--CCeEEEEeeccCccccc
Q 008860 381 DVT-DRINLTPVALMEGGALAKTLFQAEPTKPDYSAVPSAVFSQPPIGQVGLSEEQAIQEY--GDIDVFTANFRPLKATL 457 (551)
Q Consensus 381 D~~-~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~~~~~~~~~~~~~vGl~~~~a~~~~--~~~~~~~~~~~~~~~~~ 457 (551)
||+ +.+.+++.|..||+++|+||+|......+|..+|+++|++|+++++|+||+||++++ ..+.++...|.+..+.+
T Consensus 326 D~~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~~~~~~p~~a~vGlte~~a~~~~~~~~~~~~~~~~~~~~~~~ 405 (483)
T 3dgh_A 326 DIIYGKPELTPVAVLAGRLLARRLYGGSTQRMDYKDVATTVFTPLEYACVGLSEEDAVKQFGADEIEVFHGYYKPTEFFI 405 (483)
T ss_dssp TTBTTSCCCHHHHHHHHHHHHHHHHSCCCCCCCCTTCCEEECSSSEEEEEECCHHHHHHHHCGGGEEEEEEECCCGGGTT
T ss_pred cccCCCCccHHHHHHHHHHHHHHHcCCCCCcCCCCCCCEEEECCCccEEEeCCHHHHHhhCCCCCEEEEEEeecchhhhh
Confidence 998 568899999999999999999877666788999999999999999999999999874 25777776676665443
Q ss_pred cc-CCCcEEEEEEEECC-CCeEEEEEEECCChhHHHHHHHHHHHCCCCHHHHccCcccCCCchHHHHHHH
Q 008860 458 SG-LPDRIFMKLVLCAK-TNKVLGLHMCGEDAPEIVQGFAVAVKAGLTKADFDATVGVHPTAAEEFVTLR 525 (551)
Q Consensus 458 ~~-~~~~~~~kl~~~~~-~~~ilG~~~~g~~~~e~i~~~~~~i~~~~~~~~l~~~~~~~pt~~e~~~~~~ 525 (551)
.. ..+.+|+||++|++ +|+|||+|++|+++.|+|+.+++||++|+|++||.+++++|||++|++.++.
T Consensus 406 ~~~~~~~~~~k~i~~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~~ 475 (483)
T 3dgh_A 406 PQKSVRYCYLKAVAERHGDQRVYGLHYIGPVAGEVIQGFAAALKSGLTINTLINTVGIHPTTAEEFTRLA 475 (483)
T ss_dssp TTCCCTTCEEEEEEESSTTCBEEEEEEEETTHHHHHHHHHHHHHTTCBHHHHHTSCCCSSCSGGGGGGCC
T ss_pred hccCCCcEEEEEEEecCCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhcccCCCChHHHHHHHH
Confidence 22 35679999999986 8999999999999999999999999999999999999999999999988765
|
| >3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-72 Score=598.29 Aligned_cols=460 Identities=38% Similarity=0.708 Sum_probs=401.0
Q ss_pred CCCCCccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhhccCC
Q 008860 68 PSHYDFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDESNGF 147 (551)
Q Consensus 68 ~~~~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~ 147 (551)
+|..+|||+|||||+||++||..|++.|++|+|||+.... .......+||+|.+.||+|++.++..+.....+.....|
T Consensus 28 ~~~~~~DVvVIGgGpaGl~aA~~la~~G~~V~liEk~~~~-~~~~~~~~GGtc~~~GciPsk~l~~~~~~~~~~~~~~~~ 106 (519)
T 3qfa_A 28 PKSYDYDLIIIGGGSGGLAAAKEAAQYGKKVMVLDFVTPT-PLGTRWGLGGTCVNVGCIPKKLMHQAALLGQALQDSRNY 106 (519)
T ss_dssp CSSCSEEEEEECCSHHHHHHHHHHHHTTCCEEEECCCCCC-TTCCCCCTTCHHHHHSHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CcCCCCCEEEECCCHHHHHHHHHHHhCCCeEEEEeccCcc-ccccCCCcccccCCcCccchHHHHHHHHHHHHHHHHHhc
Confidence 4555799999999999999999999999999999931000 001123799999999999999999999988888899999
Q ss_pred CcccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEeEEEEecCCEEEE---cC--EEEEeCeEEEcCCCCCC
Q 008860 148 GWKYGTEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIEGRGKIVDPHTVDV---DG--KLYSARHILISVGGRPF 222 (551)
Q Consensus 148 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~i~~~~v~v---~g--~~~~~d~lviAtG~~p~ 222 (551)
|+.......++|..+..+.+...+.+...+...++..+|+++.+.+.+++++.+.+ ++ .++.||+||||||++|.
T Consensus 107 g~~~~~~~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~gV~~i~g~a~~~d~~~v~v~~~~g~~~~i~~d~lViATGs~p~ 186 (519)
T 3qfa_A 107 GWKVEETVKHDWDRMIEAVQNHIGSLNWGYRVALREKKVVYENAYGQFIGPHRIKATNNKGKEKIYSAERFLIATGERPR 186 (519)
T ss_dssp TBCCCSSCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECSEEEEEETTEEEEECTTCCCCEEEEEEEEECCCEEEC
T ss_pred CcccCCcCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEeeCCEEEEEcCCCCEEEEECCEEEEECCCCcC
Confidence 99876667899999999999888888887888888899999999999999999888 33 37999999999999999
Q ss_pred CCCCCCCC-ceecchhhhcCCCCCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCCCCCHHHHHHHHHHHHhcCc
Q 008860 223 IPDIPGSE-YAIDSDAALDLPSKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRDFVAEQMSLRGI 301 (551)
Q Consensus 223 ~p~i~g~~-~~~~~~~~~~~~~~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~Gv 301 (551)
.|++||.+ .++++++++.+...+++++|||+|++|+|+|..|+++|.+|+++++. .+++.+++++.+.+.+.|++.||
T Consensus 187 ~p~i~G~~~~~~t~~~~~~l~~~~~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~-~~l~~~d~~~~~~~~~~l~~~GV 265 (519)
T 3qfa_A 187 YLGIPGDKEYCISSDDLFSLPYCPGKTLVVGASYVALECAGFLAGIGLDVTVMVRS-ILLRGFDQDMANKIGEHMEEHGI 265 (519)
T ss_dssp CCCCTTHHHHCBCHHHHTTCSSCCCSEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CSSTTSCHHHHHHHHHHHHHTTC
T ss_pred CCCCCCccCceEcHHHHhhhhhcCCeEEEECCcHHHHHHHHHHHHcCCeEEEEecc-cccccCCHHHHHHHHHHHHHCCC
Confidence 99999964 56788999998888999999999999999999999999999999984 67888999999999999999999
Q ss_pred EEEcCcccEEEEEcCC---ceEEE--EECCCe---EEEeeEEEEecCcCCCCCCCCccccCeeec-CCCCeEeCCCCCCC
Q 008860 302 EFHTEESPQAILKSTD---GSLSV--KTNKGT---VDGFSHVMFATGRRPNTKNLGLEKVGVKMT-KNGAIEVDEYSGTA 372 (551)
Q Consensus 302 ~i~~~~~v~~i~~~~~---~~~~V--~~~~G~---~i~~d~vi~a~G~~p~~~~l~l~~~gl~~~-~~G~i~vd~~~~t~ 372 (551)
++++++.++++...++ +.+.+ ...+|+ ++++|.|++|+|++|++++++++..+++++ ++|+|.||+++||+
T Consensus 266 ~v~~~~~v~~v~~~~~~~~~~~~v~~~~~~g~~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~~G~I~Vd~~~~Ts 345 (519)
T 3qfa_A 266 KFIRQFVPIKVEQIEAGTPGRLRVVAQSTNSEEIIEGEYNTVMLAIGRDACTRKIGLETVGVKINEKTGKIPVTDEEQTN 345 (519)
T ss_dssp EEEESEEEEEEEEEECCTTCEEEEEEEESSSSCEEEEEESEEEECSCEEESCSSSCSTTTTCCCCTTTCCBCCCTTSBCS
T ss_pred EEEeCCeEEEEEEccCCCCceEEEEEEECCCcEEEEEECCEEEEecCCcccCCCCChhhcCcEEcCCCCeEeeCCCCccC
Confidence 9999998888876432 22344 345552 578999999999999999888889999998 67999999999999
Q ss_pred CCcEEEeCcCC-CCCCChHHHHHhHHHHHHHHcCCCCCCCCCCCccEEEecCCceEEeeCCHHHHHhcCC--CeEEEEee
Q 008860 373 VPSIWAVGDVT-DRINLTPVALMEGGALAKTLFQAEPTKPDYSAVPSAVFSQPPIGQVGLSEEQAIQEYG--DIDVFTAN 449 (551)
Q Consensus 373 ~~~vya~GD~~-~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~~~~~~~~~~~~~vGl~~~~a~~~~~--~~~~~~~~ 449 (551)
+|||||+|||+ +.+.+++.|..||+++|+||+|......++..+|+++|++|+++++|+||+||+++++ .+.++...
T Consensus 346 ~~~IyA~GD~~~g~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~~~~~~p~~a~vGlte~~a~~~~~~~~~~~~~~~ 425 (519)
T 3qfa_A 346 VPYIYAIGDILEDKVELTPVAIQAGRLLAQRLYAGSTVKCDYENVPTTVFTPLEYGACGLSEEKAVEKFGEENIEVYHSY 425 (519)
T ss_dssp STTEEECGGGBSSSCCCHHHHHHHHHHHHHHHHSCCCCCCCCTTCCEEECSSSCEEEEECCHHHHHHHHCGGGEEEEEEE
T ss_pred CCCEEEEEeccCCCCccHHHHHHHHHHHHHHHcCCCCccCCCCcCcEEEECCCceEEecCCHHHHHhhCCCCCEEEEEEe
Confidence 99999999999 6689999999999999999998776677899999999999999999999999998743 57777777
Q ss_pred ccCcccccccC-CCcEEEEEEEEC-CCCeEEEEEEECCChhHHHHHHHHHHHCCCCHHHHccCcccCCCchHHHHHHHhh
Q 008860 450 FRPLKATLSGL-PDRIFMKLVLCA-KTNKVLGLHMCGEDAPEIVQGFAVAVKAGLTKADFDATVGVHPTAAEEFVTLRTP 527 (551)
Q Consensus 450 ~~~~~~~~~~~-~~~~~~kl~~~~-~~~~ilG~~~~g~~~~e~i~~~~~~i~~~~~~~~l~~~~~~~pt~~e~~~~~~~~ 527 (551)
|.+..++.... .+.+|+||++|+ ++|+|||+|++|+++.|+|+.+++||++++|++||.+++++|||++|++.++...
T Consensus 426 ~~~~~~~~~~~~~~~g~~Kli~~~~~~~~ilGa~i~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~E~~~~~~~~ 505 (519)
T 3qfa_A 426 FWPLEWTIPSRDNNKCYAKIICNTKDNERVVGFHVLGPNAGEVTQGFAAALKCGLTKKQLDSTIGIHPVCAEVFTTLSVT 505 (519)
T ss_dssp ECCHHHHTTTCCTTTEEEEEEEETTTTCEEEEEEEESTTHHHHHHHHHHHHHTTCBHHHHHHSCCCTTCGGGGGGGCCCB
T ss_pred ccchhhhhhccCCCcEEEEEEEecCCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhccccCCCChHHHHHHHHhh
Confidence 77766654433 468999999997 5899999999999999999999999999999999999999999999998887755
Q ss_pred hh
Q 008860 528 TR 529 (551)
Q Consensus 528 ~~ 529 (551)
++
T Consensus 506 ~~ 507 (519)
T 3qfa_A 506 KR 507 (519)
T ss_dssp TT
T ss_pred hh
Confidence 53
|
| >2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-71 Score=590.83 Aligned_cols=442 Identities=39% Similarity=0.722 Sum_probs=398.4
Q ss_pred CCccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhhccCCCcc
Q 008860 71 YDFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDESNGFGWK 150 (551)
Q Consensus 71 ~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~ 150 (551)
.+|||+|||||++|+++|.+|++.|++|+||| +..+||+|.|.||+|++.++..+.....+.....|++.
T Consensus 10 ~~~dVvVIGgG~aGl~aA~~l~~~g~~V~liE----------~~~~GG~~~n~gciP~k~l~~~~~~~~~~~~~~~~g~~ 79 (479)
T 2hqm_A 10 KHYDYLVIGGGSGGVASARRAASYGAKTLLVE----------AKALGGTCVNVGCVPKKVMWYASDLATRVSHANEYGLY 79 (479)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHHTSCCEEEEE----------SSCTTHHHHHHSHHHHHHHHHHHHHHHHHTTTTTTTBS
T ss_pred ccCCEEEEcCCHHHHHHHHHHHHCCCcEEEEe----------CCCcCCcCcccCcHHHHHHHHHHHHHHHHHhHHhcCcc
Confidence 46899999999999999999999999999999 55799999999999999999888877777777777775
Q ss_pred cC----C-CCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEeEEEEecCCEEEE---cCE--EEEeCeEEEcCCCC
Q 008860 151 YG----T-EPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIEGRGKIVDPHTVDV---DGK--LYSARHILISVGGR 220 (551)
Q Consensus 151 ~~----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~i~~~~v~v---~g~--~~~~d~lviAtG~~ 220 (551)
.. . ...++|..+..+.......+...+...+++.+++++.+++..++++.+.+ +++ .+.||+||+|||++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~i~~~~~~v~~~~g~~~~~~~d~lviAtGs~ 159 (479)
T 2hqm_A 80 QNLPLDKEHLTFNWPEFKQKRDAYVHRLNGIYQKNLEKEKVDVVFGWARFNKDGNVEVQKRDNTTEVYSANHILVATGGK 159 (479)
T ss_dssp TTSCCSGGGCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEECTTSCEEEEESSSCCEEEEEEEEEECCCEE
T ss_pred cccccccccCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEeeCCEEEEEeCCCcEEEEEeCEEEEcCCCC
Confidence 41 1 35688999998888888888888888888899999999988888877766 555 79999999999999
Q ss_pred CCCC-CCCCCCceecchhhhcCCCCCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCCCCCHHHHHHHHHHHHhc
Q 008860 221 PFIP-DIPGSEYAIDSDAALDLPSKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRDFVAEQMSLR 299 (551)
Q Consensus 221 p~~p-~i~g~~~~~~~~~~~~~~~~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~ 299 (551)
|..| ++||.+.++++++++.+...+++++|||+|++|+|+|..|+++|.+|+++++.+.+++.+++++.+.+.+.|++.
T Consensus 160 p~~p~~i~g~~~~~~~~~~~~l~~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~~d~~~~~~l~~~l~~~ 239 (479)
T 2hqm_A 160 AIFPENIPGFELGTDSDGFFRLEEQPKKVVVVGAGYIGIELAGVFHGLGSETHLVIRGETVLRKFDECIQNTITDHYVKE 239 (479)
T ss_dssp ECCCTTSTTGGGSBCHHHHHHCSSCCSEEEEECSSHHHHHHHHHHHHTTCEEEEECSSSSSCTTSCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCcccccchHHHhcccccCCeEEEECCCHHHHHHHHHHHHcCCceEEEEeCCccccccCHHHHHHHHHHHHhC
Confidence 9999 899988788889999988889999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEcCcccEEEEEcCCc-eEEEEECCC-eEEEeeEEEEecCcCCCCCCCCccccCeeecCCCCeEeCCCCCCCCCcEE
Q 008860 300 GIEFHTEESPQAILKSTDG-SLSVKTNKG-TVDGFSHVMFATGRRPNTKNLGLEKVGVKMTKNGAIEVDEYSGTAVPSIW 377 (551)
Q Consensus 300 Gv~i~~~~~v~~i~~~~~~-~~~V~~~~G-~~i~~d~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~t~~~~vy 377 (551)
||+++++++|++++.++++ .+.|.+.+| +++++|.||+|+|++|++ .|.++..|++++++|+|.||+++||+.|+||
T Consensus 240 Gv~i~~~~~v~~i~~~~~~~~~~v~~~~G~~~i~~D~vv~a~G~~p~~-~l~l~~~gl~~~~~G~i~vd~~~~t~~~~Iy 318 (479)
T 2hqm_A 240 GINVHKLSKIVKVEKNVETDKLKIHMNDSKSIDDVDELIWTIGRKSHL-GMGSENVGIKLNSHDQIIADEYQNTNVPNIY 318 (479)
T ss_dssp TCEEECSCCEEEEEECC-CCCEEEEETTSCEEEEESEEEECSCEEECC-CSSGGGGTCCBCTTSCBCCCTTCBCSSTTEE
T ss_pred CeEEEeCCEEEEEEEcCCCcEEEEEECCCcEEEEcCEEEECCCCCCcc-ccChhhcCceECCCCCEeECCCCccCCCCEE
Confidence 9999999999999876443 367888999 789999999999999999 4446888999999999999999999999999
Q ss_pred EeCcCCCCCCChHHHHHhHHHHHHHHcCCC---CCCCCCCCccEEEecCCceEEeeCCHHHHHhcCC--CeEEEEeeccC
Q 008860 378 AVGDVTDRINLTPVALMEGGALAKTLFQAE---PTKPDYSAVPSAVFSQPPIGQVGLSEEQAIQEYG--DIDVFTANFRP 452 (551)
Q Consensus 378 a~GD~~~~~~~~~~A~~~g~~aa~~i~g~~---~~~~~~~~~~~~~~~~~~~~~vGl~~~~a~~~~~--~~~~~~~~~~~ 452 (551)
|+|||++.+.+++.|.+||+++|.||+|.. ....+|..+|+++|++|+++++|++|++|+++++ ++.+...++..
T Consensus 319 A~GD~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~~vGl~e~~a~~~~~~~~~~~~~~~~~~ 398 (479)
T 2hqm_A 319 SLGDVVGKVELTPVAIAAGRKLSNRLFGPEKFRNDKLDYENVPSVIFSHPEAGSIGISEKEAIEKYGKENIKVYNSKFTA 398 (479)
T ss_dssp ECGGGTTSSCCHHHHHHHHHHHHHHHHSCGGGTTCCCCCTTCCEEECCSSCEEEEECCHHHHHHHHCGGGEEEEEEEECC
T ss_pred EEEecCCCcccHHHHHHHHHHHHHHhcCCCccCcccCCCCCCCeEEECCCCeEEEeCCHHHHHhcCCCCcEEEEEEeccH
Confidence 999999988999999999999999999865 4446778899999999999999999999988743 48888888888
Q ss_pred cccccccCCCcEEEEEEEECCCCeEEEEEEECCChhHHHHHHHHHHHCCCCHHHHccCcccCCCchHHHHH
Q 008860 453 LKATLSGLPDRIFMKLVLCAKTNKVLGLHMCGEDAPEIVQGFAVAVKAGLTKADFDATVGVHPTAAEEFVT 523 (551)
Q Consensus 453 ~~~~~~~~~~~~~~kl~~~~~~~~ilG~~~~g~~~~e~i~~~~~~i~~~~~~~~l~~~~~~~pt~~e~~~~ 523 (551)
..+++..+.+.+|+|+++|+++|+|||+|++|+++.|+|+.+++||++++|++||.+++++|||++|++.+
T Consensus 399 ~~~~~~~~~~~~~~kli~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~ 469 (479)
T 2hqm_A 399 MYYAMLSEKSPTRYKIVCAGPNEKVVGLHIVGDSSAEILQGFGVAIKMGATKADFDNCVAIHPTSAEELVT 469 (479)
T ss_dssp GGGGGCSSCCCEEEEEEEETTTTEEEEEEEESTTHHHHHHHHHHHHHTTCBHHHHHTSCCCSSCSGGGGGS
T ss_pred HHHHhhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhCcCCCCChHHHHHH
Confidence 88887777788999999999999999999999999999999999999999999999999999999998754
|
| >1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-71 Score=590.22 Aligned_cols=440 Identities=39% Similarity=0.671 Sum_probs=388.6
Q ss_pred CccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhhccCCCccc
Q 008860 72 DFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDESNGFGWKY 151 (551)
Q Consensus 72 ~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~~ 151 (551)
+|||+|||||+||+++|.+|++.|++|+||| +..+||+|.+.||+|++.++..+.+...+.+...||+..
T Consensus 2 ~~dVvIIGgG~aGl~aA~~l~~~g~~V~liE----------~~~~GG~c~~~gc~P~k~l~~~a~~~~~~~~~~~~g~~~ 71 (500)
T 1onf_A 2 VYDLIVIGGGSGGMAAARRAARHNAKVALVE----------KSRLGGTCVNVGCVPKKIMFNAASVHDILENSRHYGFDT 71 (500)
T ss_dssp CBSEEEECCSHHHHHHHHHHHHTTCCEEEEE----------SSSTTHHHHHTSHHHHHHHHHHHHHHHHHHHGGGGTCCC
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCCcEEEEe----------CCCcCccccccCCcchHHHHHHHHHHHHHHhhHhcCCcc
Confidence 5899999999999999999999999999999 456899999999999999999888888888877788764
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEeEEEEecCCEEEE-c-------------CEEEEeCeEEEcC
Q 008860 152 GTEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIEGRGKIVDPHTVDV-D-------------GKLYSARHILISV 217 (551)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~i~~~~v~v-~-------------g~~~~~d~lviAt 217 (551)
. ..++|..+..+..+.+..+...+...+.+.+++++.+++..++++.+.+ + +..+.||+||+||
T Consensus 72 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~id~~~v~v~~~~~~~~~~~~~~~~~~~~~d~lViAt 149 (500)
T 1onf_A 72 K--FSFNLPLLVERRDKYIQRLNNIYRQNLSKDKVDLYEGTASFLSENRILIKGTKDNNNKDNGPLNEEILEGRNILIAV 149 (500)
T ss_dssp C--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESCCCCC--------------------------CBSSEEECC
T ss_pred C--CccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEeeCCEEEEEeccccccccccCCCceEEEeCEEEECC
Confidence 4 6789999998888888888877888888899999999877777777666 3 5679999999999
Q ss_pred CCCCCCCCCCCCCceecchhhhcCCCCCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCCCCCHHHHHHHHHHHH
Q 008860 218 GGRPFIPDIPGSEYAIDSDAALDLPSKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRDFVAEQMS 297 (551)
Q Consensus 218 G~~p~~p~i~g~~~~~~~~~~~~~~~~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~ 297 (551)
|++|..|++||.+.++++++++.+.. +++++|||+|++|+|+|..|+++|.+|+++++.+++++.+++++.+.+.+.|+
T Consensus 150 Gs~p~~p~i~G~~~~~~~~~~~~~~~-~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~~d~~~~~~l~~~l~ 228 (500)
T 1onf_A 150 GNKPVFPPVKGIENTISSDEFFNIKE-SKKIGIVGSGYIAVELINVIKRLGIDSYIFARGNRILRKFDESVINVLENDMK 228 (500)
T ss_dssp CCCBCCCSCTTGGGCEEHHHHTTCCC-CSEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSSSCTTSCHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCcccCHHHHhccCC-CCeEEEECChHHHHHHHHHHHHcCCeEEEEecCCccCcccchhhHHHHHHHHH
Confidence 99999999999887888899988877 99999999999999999999999999999999999999999999999999999
Q ss_pred hcCcEEEcCcccEEEEEcCCceEEEEECCCeE-EEeeEEEEecCcCCCCCCCCccccCeeecCCCCeEeCCCCCCCCCcE
Q 008860 298 LRGIEFHTEESPQAILKSTDGSLSVKTNKGTV-DGFSHVMFATGRRPNTKNLGLEKVGVKMTKNGAIEVDEYSGTAVPSI 376 (551)
Q Consensus 298 ~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~G~~-i~~d~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~t~~~~v 376 (551)
++||+++++++|++++.++++.+.|.+.+|++ +++|.||+|+|++|+++.|.++.+++++ ++|+|.||+++||+.|+|
T Consensus 229 ~~gv~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~D~vi~a~G~~p~~~~l~~~~~g~~~-~~G~i~vd~~~~t~~~~i 307 (500)
T 1onf_A 229 KNNINIVTFADVVEIKKVSDKNLSIHLSDGRIYEHFDHVIYCVGRSPDTENLKLEKLNVET-NNNYIVVDENQRTSVNNI 307 (500)
T ss_dssp HTTCEEECSCCEEEEEESSTTCEEEEETTSCEEEEESEEEECCCBCCTTTTSSCTTTTCCB-SSSCEEECTTCBCSSSSE
T ss_pred hCCCEEEECCEEEEEEEcCCceEEEEECCCcEEEECCEEEECCCCCcCCCCCCchhcCccc-cCCEEEECCCcccCCCCE
Confidence 99999999999999987654446788899988 9999999999999999766578889998 789999999999999999
Q ss_pred EEeCcCC----------------------------------CCCCChHHHHHhHHHHHHHHcCCCCCCCCCCCccEEEec
Q 008860 377 WAVGDVT----------------------------------DRINLTPVALMEGGALAKTLFQAEPTKPDYSAVPSAVFS 422 (551)
Q Consensus 377 ya~GD~~----------------------------------~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~~~~~~~ 422 (551)
||+|||+ +.+++++.|.+||+++|+||+|+.....+|..+|+++|+
T Consensus 308 ya~GD~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~~~~~ 387 (500)
T 1onf_A 308 YAVGDCCMVKKSKEIEDLNLLKLYNEERYLNKKENVTEDIFYNVQLTPVAINAGRLLADRLFLKKTRKTNYKLIPTVIFS 387 (500)
T ss_dssp EECSTTEEEC------------------------------CBCCCCHHHHHHHHHHHHHHHHSCTTCCCCCSSCCEEECC
T ss_pred EEEeccccccccccccccccccccccccccccccccccccCCcccchhHHHHHHHHHHHHHhCCCCccCCCCCCCeEEEc
Confidence 9999999 456889999999999999999866556678889999999
Q ss_pred CCceEEeeCCHHHHHhcC--CCeEEEEeeccCccccc----ccCCCcEEEEEEEECCCCeEEEEEEECCChhHHHHHHHH
Q 008860 423 QPPIGQVGLSEEQAIQEY--GDIDVFTANFRPLKATL----SGLPDRIFMKLVLCAKTNKVLGLHMCGEDAPEIVQGFAV 496 (551)
Q Consensus 423 ~~~~~~vGl~~~~a~~~~--~~~~~~~~~~~~~~~~~----~~~~~~~~~kl~~~~~~~~ilG~~~~g~~~~e~i~~~~~ 496 (551)
+|+++++|++|++|++.+ .++.++..++....++. ....+.+|+|+++|+++|+|||+|++|+++.|+|+.+++
T Consensus 388 ~~~~a~vGl~e~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kli~~~~~~~ilG~~~~g~~a~~~i~~~~~ 467 (500)
T 1onf_A 388 HPPIGTIGLSEEAAIQIYGKENVKIYESKFTNLFFSVYDIEPELKEKTYLKLVCVGKDELIKGLHIIGLNADEIVQGFAV 467 (500)
T ss_dssp SSCEEEEECCHHHHHHHTCGGGEEEEEEEECCGGGTTSCSCGGGSCCEEEEEEEETTTTEEEEEEEESTTHHHHHHHHHH
T ss_pred CcceEEEeCCHHHHHhcCCCccEEEEEEECchhhhhhccccccCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHH
Confidence 999999999999998874 47888888888877765 455678999999999999999999999999999999999
Q ss_pred HHHCCCCHHHHccCcccCCCchHHHHHHH
Q 008860 497 AVKAGLTKADFDATVGVHPTAAEEFVTLR 525 (551)
Q Consensus 497 ~i~~~~~~~~l~~~~~~~pt~~e~~~~~~ 525 (551)
||++++|++||.+++++|||++|++.++.
T Consensus 468 ai~~~~t~~~l~~~~~~~Pt~~e~~~~~~ 496 (500)
T 1onf_A 468 ALKMNATKKDFDETIPIHPTAAEEFLTLQ 496 (500)
T ss_dssp HHHTTCBHHHHHTSCCCTTCSTTHHHHCC
T ss_pred HHHcCCCHHHHhccccCCCCHHHHHHHhc
Confidence 99999999999999999999999987644
|
| >3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-71 Score=588.11 Aligned_cols=445 Identities=29% Similarity=0.465 Sum_probs=398.5
Q ss_pred CCCCCccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhh-ccC
Q 008860 68 PSHYDFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDE-SNG 146 (551)
Q Consensus 68 ~~~~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~-~~~ 146 (551)
+++++|||+|||||+||++||..|++.|++|+|||+ ...+||+|.+.||+|++.++..++....... +..
T Consensus 21 ~~m~~~dVvVIGgG~aGl~aA~~la~~G~~V~liEk---------~~~~GG~~~~~gciP~k~l~~~~~~~~~~~~~~~~ 91 (491)
T 3urh_A 21 QSMMAYDLIVIGSGPGGYVCAIKAAQLGMKVAVVEK---------RSTYGGTCLNVGCIPSKALLHASEMFHQAQHGLEA 91 (491)
T ss_dssp -----CCEEEECCSHHHHHHHHHHHHTTCCEEEEES---------SSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHSSGG
T ss_pred hhcccCCEEEECCCHHHHHHHHHHHHCCCeEEEEec---------CCCCCCccccccchhhHHHHHHHHHHHHHHhhHhh
Confidence 344569999999999999999999999999999993 4679999999999999999998887776665 577
Q ss_pred CCcccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEeEEEEecCCEEEE---cC--EEEEeCeEEEcCCCCC
Q 008860 147 FGWKYGTEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIEGRGKIVDPHTVDV---DG--KLYSARHILISVGGRP 221 (551)
Q Consensus 147 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~i~~~~v~v---~g--~~~~~d~lviAtG~~p 221 (551)
+|+... .+.++|..+..+.......+...+...+.+.+++++.+.+.+++++.+.+ ++ ..+.||+||||||++|
T Consensus 92 ~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~v~~~~g~~~~~~~d~lViATGs~p 170 (491)
T 3urh_A 92 LGVEVA-NPKLNLQKMMAHKDATVKSNVDGVSFLFKKNKIDGFQGTGKVLGQGKVSVTNEKGEEQVLEAKNVVIATGSDV 170 (491)
T ss_dssp GTEECC-CCEECHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESEEEECSSSEEEEECTTSCEEEEECSEEEECCCEEC
T ss_pred cCcccC-CCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEecCCEEEEEeCCCceEEEEeCEEEEccCCCC
Confidence 887654 56789999999998888888888888889999999999999999988887 34 6899999999999986
Q ss_pred CCCCCCCCC------ceecchhhhcCCCCCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCCCCCHHHHHHHHHH
Q 008860 222 FIPDIPGSE------YAIDSDAALDLPSKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRDFVAEQ 295 (551)
Q Consensus 222 ~~p~i~g~~------~~~~~~~~~~~~~~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~ 295 (551)
. ++||.+ .++++++.+.+...+++++|||+|++|+|+|..|+++|.+|+++++.+.+++.+++++.+.+.+.
T Consensus 171 ~--~ipg~~~~~~~~~~~~~~~~~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~d~~~~~~l~~~ 248 (491)
T 3urh_A 171 A--GIPGVEVAFDEKTIVSSTGALALEKVPASMIVVGGGVIGLELGSVWARLGAKVTVVEFLDTILGGMDGEVAKQLQRM 248 (491)
T ss_dssp C--CBTTBCCCCCSSSEECHHHHTSCSSCCSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSSSSSCHHHHHHHHHH
T ss_pred C--CCCCcccccCCeeEEehhHhhhhhhcCCeEEEECCCHHHHHHHHHHHHcCCEEEEEeccccccccCCHHHHHHHHHH
Confidence 3 445542 47888888888888999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCcEEEcCcccEEEEEcCCceEEEEECC---C--eEEEeeEEEEecCcCCCCCCCCccccCeeecCCCCeEeCCCCC
Q 008860 296 MSLRGIEFHTEESPQAILKSTDGSLSVKTNK---G--TVDGFSHVMFATGRRPNTKNLGLEKVGVKMTKNGAIEVDEYSG 370 (551)
Q Consensus 296 l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~---G--~~i~~d~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~ 370 (551)
+++.||+++++++|++++.++++ +.+.+.+ | +++++|.||+|+|++|++++++++..+++++++|+|.||+++|
T Consensus 249 l~~~gV~v~~~~~v~~i~~~~~~-~~v~~~~~~~g~~~~i~~D~Vi~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~ 327 (491)
T 3urh_A 249 LTKQGIDFKLGAKVTGAVKSGDG-AKVTFEPVKGGEATTLDAEVVLIATGRKPSTDGLGLAKAGVVLDSRGRVEIDRHFQ 327 (491)
T ss_dssp HHHTTCEEECSEEEEEEEEETTE-EEEEEEETTSCCCEEEEESEEEECCCCEECCTTSCHHHHTCCBCTTSCBCCCTTCB
T ss_pred HHhCCCEEEECCeEEEEEEeCCE-EEEEEEecCCCceEEEEcCEEEEeeCCccCCCccCchhcCceECCCCCEeECCCCC
Confidence 99999999999999999887665 5566542 5 5799999999999999999887888999999999999999999
Q ss_pred CCCCcEEEeCcCCCCCCChHHHHHhHHHHHHHHcCCCCCCCCCCCccEEEecCCceEEeeCCHHHHHhcCCCeEEEEeec
Q 008860 371 TAVPSIWAVGDVTDRINLTPVALMEGGALAKTLFQAEPTKPDYSAVPSAVFSQPPIGQVGLSEEQAIQEYGDIDVFTANF 450 (551)
Q Consensus 371 t~~~~vya~GD~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~~~~~~~~~~~~~vGl~~~~a~~~~~~~~~~~~~~ 450 (551)
|++|+|||+|||++.+++++.|..||+++|+||+|.. ...++..+|+++|++|+++++|+||+||++++.++.+...+|
T Consensus 328 t~~~~IyA~GD~~~~~~~~~~A~~~g~~aa~~i~g~~-~~~~~~~~p~~~~~~p~~a~vGlte~~a~~~g~~~~~~~~~~ 406 (491)
T 3urh_A 328 TSIAGVYAIGDVVRGPMLAHKAEDEGVAVAEIIAGQA-GHVNYDVIPGVVYTQPEVASVGKTEEELKAAGVAYKIGKFPF 406 (491)
T ss_dssp CSSTTEEECGGGSSSCCCHHHHHHHHHHHHHHHTTSC-CCCCTTCCCEEECSSSCEEEEECCHHHHHHTTCCEEEEEEEG
T ss_pred CCCCCEEEEEecCCCccchhHHHHHHHHHHHHHcCCC-cccCCCCCCEEEEccCCeEEEeCCHHHHHhCCCCEEEEEEec
Confidence 9999999999999999999999999999999999865 345788899999999999999999999999988899988888
Q ss_pred cCcccccccCCCcEEEEEEEECCCCeEEEEEEECCChhHHHHHHHHHHHCCCCHHHHccCcccCCCchHHHHHHHh
Q 008860 451 RPLKATLSGLPDRIFMKLVLCAKTNKVLGLHMCGEDAPEIVQGFAVAVKAGLTKADFDATVGVHPTAAEEFVTLRT 526 (551)
Q Consensus 451 ~~~~~~~~~~~~~~~~kl~~~~~~~~ilG~~~~g~~~~e~i~~~~~~i~~~~~~~~l~~~~~~~pt~~e~~~~~~~ 526 (551)
....++...+.+.+|+|+++|+++|+|||+|++|+++.|+|+.+++||++|+|++||.+++++|||++|++.++..
T Consensus 407 ~~~~~~~~~~~~~g~~k~i~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~~~ 482 (491)
T 3urh_A 407 TANGRARAMLQTDGFVKILADKETDRVLGGHIIGFGAGEMIHEIAVLMEFGGSSEDLGRTCHAHPTMSEAVKEAAL 482 (491)
T ss_dssp GGCHHHHHTTCCCCEEEEEEETTTCBEEEEEEESTTHHHHHHHHHHHHHTTCBHHHHHTSCCCSSCTTHHHHHHHH
T ss_pred CcchhhhcCCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCcHHHHhcCccCCCChHHHHHHHHH
Confidence 8888887777888999999999999999999999999999999999999999999999999999999999887544
|
| >3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-71 Score=584.55 Aligned_cols=436 Identities=24% Similarity=0.363 Sum_probs=394.3
Q ss_pred CCCCccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhhccCCC
Q 008860 69 SHYDFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDESNGFG 148 (551)
Q Consensus 69 ~~~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g 148 (551)
|+++|||+|||||++|+++|..|++.|++|+|||+ ...+||+|.+.||+|++.++..+.....+.+...
T Consensus 1 M~~~~DVvVIGgG~aGl~aA~~l~~~G~~V~liEk---------~~~~GG~~~~~gciPsk~l~~~a~~~~~~~~~~~-- 69 (466)
T 3l8k_A 1 MSLKYDVVVIGAGGAGYHGAFRLAKAKYNVLMADP---------KGELGGNCLYSGCVPSKTVREVIQTAWRLTNIAN-- 69 (466)
T ss_dssp -CEEEEEEEECCSHHHHHHHHHHHHTTCCEEEECT---------TSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred CCccceEEEECCCHHHHHHHHHHHhCCCeEEEEEC---------CCCCCCcccccCCCchHHHHHHHHHHHHHHhccc--
Confidence 34569999999999999999999999999999994 6779999999999999999999888777776654
Q ss_pred cccCCCCCCChHHHHHHHHHHHHHHH--HHHHHHHHhCCeEEEEeEEEEecCCEEEE---cCEE--EEeCeEEEcCCCCC
Q 008860 149 WKYGTEPQHDWSTLIANKNAELQRLT--GIYKNILINAGITLIEGRGKIVDPHTVDV---DGKL--YSARHILISVGGRP 221 (551)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~v~~~~~~~~~i~~~~v~v---~g~~--~~~d~lviAtG~~p 221 (551)
....++|..+..+.....+ +. ..+...+.+.+++++.+++.++++..+.+ +++. +.||+||+|||++|
T Consensus 70 ----~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~~~v~~~~g~v~~id~~~~~V~~~~g~~~~~~~d~lviAtG~~p 144 (466)
T 3l8k_A 70 ----VKIPLDFSTVQDRKDYVQE-LRFKQHKRNMSQYETLTFYKGYVKIKDPTHVIVKTDEGKEIEAETRYMIIASGAET 144 (466)
T ss_dssp ----SCCCCCHHHHHHHHHHHHH-HHHHHHHHHHTTCTTEEEESEEEEEEETTEEEEEETTSCEEEEEEEEEEECCCEEE
T ss_pred ----CCCCcCHHHHHHHHHhhee-ccccchHHHHHHhCCCEEEEeEEEEecCCeEEEEcCCCcEEEEecCEEEECCCCCc
Confidence 2456789999888887777 66 66777778889999999999999888777 5556 99999999999999
Q ss_pred CCCCCCCCCceecchhhh----cCCCCCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCCCC-CHHHHHHHHHHH
Q 008860 222 FIPDIPGSEYAIDSDAAL----DLPSKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGF-DEDIRDFVAEQM 296 (551)
Q Consensus 222 ~~p~i~g~~~~~~~~~~~----~~~~~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~~~-~~~~~~~l~~~l 296 (551)
..|++||.+.+++.++++ .+...+++++|||+|++|+|+|..|+++|.+|+++++.+++++.+ ++++.+.+.+.+
T Consensus 145 ~~p~i~G~~~~~t~~~~~~~~~~l~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~d~~~~~~l~~~l 224 (466)
T 3l8k_A 145 AKLRLPGVEYCLTSDDIFGYKTSFRKLPQDMVIIGAGYIGLEIASIFRLMGVQTHIIEMLDRALITLEDQDIVNTLLSIL 224 (466)
T ss_dssp CCCCCTTGGGSBCHHHHHSTTCSCCSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTTSCCHHHHHHHHHHH
T ss_pred cCCCCCCccceEeHHHHHHHHHHHhhCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEEeCCcCCCCCCCHHHHHHHHhcC
Confidence 999999998888999988 667778999999999999999999999999999999999999987 999999998888
Q ss_pred HhcCcEEEcCcccEEEEEcC-CceEEEEEC--CCe--EEEeeEEEEecCcCCCCCCCCccccCeeecCCCCeEeCCCCCC
Q 008860 297 SLRGIEFHTEESPQAILKST-DGSLSVKTN--KGT--VDGFSHVMFATGRRPNTKNLGLEKVGVKMTKNGAIEVDEYSGT 371 (551)
Q Consensus 297 ~~~Gv~i~~~~~v~~i~~~~-~~~~~V~~~--~G~--~i~~d~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~t 371 (551)
+ |+++++++|++++.++ ++ +.+.+. +|+ ++++|.|++|+|++|+++ |+++..|++++++| |.||+++||
T Consensus 225 ~---v~i~~~~~v~~i~~~~~~~-v~v~~~~~~G~~~~i~~D~vi~a~G~~p~~~-l~l~~~gl~~~~~G-i~vd~~~~t 298 (466)
T 3l8k_A 225 K---LNIKFNSPVTEVKKIKDDE-YEVIYSTKDGSKKSIFTNSVVLAAGRRPVIP-EGAREIGLSISKTG-IVVDETMKT 298 (466)
T ss_dssp C---CCEECSCCEEEEEEEETTE-EEEEECCTTSCCEEEEESCEEECCCEEECCC-TTTGGGTCCBCSSS-BCCCTTCBC
T ss_pred E---EEEEECCEEEEEEEcCCCc-EEEEEEecCCceEEEEcCEEEECcCCCcccc-cchhhcCceeCCCC-EeECCCccC
Confidence 7 9999999999998866 54 678887 676 799999999999999999 66789999999999 999999999
Q ss_pred CCCcEEEeCcCCCCCCChHHHHHhHHHHHHHHcCC--CCCCCCCCCccEEEecCCceEEeeCCHHHHHhcCCCeEEEEee
Q 008860 372 AVPSIWAVGDVTDRINLTPVALMEGGALAKTLFQA--EPTKPDYSAVPSAVFSQPPIGQVGLSEEQAIQEYGDIDVFTAN 449 (551)
Q Consensus 372 ~~~~vya~GD~~~~~~~~~~A~~~g~~aa~~i~g~--~~~~~~~~~~~~~~~~~~~~~~vGl~~~~a~~~~~~~~~~~~~ 449 (551)
++|+|||+|||++.+++++.|..||+++|.||+|. .....++..+|+++|++|+++++|++|++|++++.++.+...+
T Consensus 299 ~~~~Iya~GD~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~a~vG~te~~a~~~g~~~~~~~~~ 378 (466)
T 3l8k_A 299 NIPNVFATGDANGLAPYYHAAVRMSIAAANNIMANGMPVDYVDVKSIPVTIYTIPSLSYVGILPSKARKMGIEIVEAEYN 378 (466)
T ss_dssp SSTTEEECGGGTCSCCSHHHHHHHHHHHHHHHHTTTSCCCCCCSTTSCEEECSSSCEEEEECCHHHHHHHTCCEEEEEEE
T ss_pred CCCCEEEEEecCCCCccHhHHHHHHHHHHHHHhCCCCCccccCCCCCcEEEECCCCeEEecCCHHHHHhCCCCEEEEEEE
Confidence 99999999999999999999999999999999987 5556688899999999999999999999999998899999988
Q ss_pred ccCcccccccCCCcEEEEEEEECCCCeEEEEEEECCChhHHHHHHHHHHHCCCCHHHHccCcccCCCchHHHHHHHh
Q 008860 450 FRPLKATLSGLPDRIFMKLVLCAKTNKVLGLHMCGEDAPEIVQGFAVAVKAGLTKADFDATVGVHPTAAEEFVTLRT 526 (551)
Q Consensus 450 ~~~~~~~~~~~~~~~~~kl~~~~~~~~ilG~~~~g~~~~e~i~~~~~~i~~~~~~~~l~~~~~~~pt~~e~~~~~~~ 526 (551)
+....+++..+.+.+|+|+++|+++|+|||+|++|+++.|+|+.+++||++|+|++||.+++++|||++|++.++..
T Consensus 379 ~~~~~~~~~~~~~~g~~k~i~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~Pt~~e~~~~~~~ 455 (466)
T 3l8k_A 379 MEEDVSAQIYGQKEGVLKLIFERGSMRLIGAWMIGVHSQYLINELGLAVAYGLNAKQLASFAEQHPSTNEIISYTAR 455 (466)
T ss_dssp GGGSHHHHHHTCCCCEEEEEEETTTCBEEEEEEESTTHHHHHHHHHHHHHTTCBHHHHHHCCCCTTSTTHHHHHHHH
T ss_pred cccChhheecCCCeEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCcCCHHHHhccccCCCChHHHHHHHHH
Confidence 88888877777889999999999999999999999999999999999999999999999999999999999876544
|
| >3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-70 Score=582.39 Aligned_cols=450 Identities=30% Similarity=0.466 Sum_probs=400.0
Q ss_pred CCccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhh-ccCCCc
Q 008860 71 YDFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDE-SNGFGW 149 (551)
Q Consensus 71 ~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~-~~~~g~ 149 (551)
++|||+|||||++|++||++|++.|++|+|||+.. .......+||+|.+.||+|++.++..+........ +..||+
T Consensus 2 ~~~DVvVIGgG~aGl~aA~~la~~G~~V~liEk~~---~~gG~~~~GG~~~~~gciPsk~l~~~~~~~~~~~~~~~~~g~ 78 (476)
T 3lad_A 2 QKFDVIVIGAGPGGYVAAIKSAQLGLKTALIEKYK---GKEGKTALGGTCLNVGCIPSKALLDSSYKFHEAHESFKLHGI 78 (476)
T ss_dssp CCCSEEEECCSHHHHHHHHHHHHHTCCEEEEECCB---CTTSSBCCSHHHHHHSHHHHHHHHHHHHHHHHHHTTSGGGTE
T ss_pred CcCCEEEECcCHHHHHHHHHHHhCCCEEEEEeCCC---ccCCCCCcCCccccccHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 36999999999999999999999999999999310 00011248999999999999999988877766654 567777
Q ss_pred ccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEeEEEEecCCEEEE---cC--EEEEeCeEEEcCCCCCCCC
Q 008860 150 KYGTEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIEGRGKIVDPHTVDV---DG--KLYSARHILISVGGRPFIP 224 (551)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~i~~~~v~v---~g--~~~~~d~lviAtG~~p~~p 224 (551)
... ...++|..+..+.....+.+...+...+++.+++++.+.+.++++..+.+ ++ ..+.||++|+|||++|..|
T Consensus 79 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~v~~~~g~~~~~~~d~lvlAtG~~p~~~ 157 (476)
T 3lad_A 79 STG-EVAIDVPTMIARKDQIVRNLTGGVASLIKANGVTLFEGHGKLLAGKKVEVTAADGSSQVLDTENVILASGSKPVEI 157 (476)
T ss_dssp ECS-CCEECHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEESEEEECSTTCEEEECTTSCEEEECCSCEEECCCEEECCC
T ss_pred ccC-CCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEecCCEEEEEcCCCceEEEEcCEEEEcCCCCCCCC
Confidence 653 46789999999988888888888888888889999999999999888777 34 6899999999999999877
Q ss_pred CCCCC--CceecchhhhcCCCCCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCCCCCHHHHHHHHHHHHhcCcE
Q 008860 225 DIPGS--EYAIDSDAALDLPSKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRDFVAEQMSLRGIE 302 (551)
Q Consensus 225 ~i~g~--~~~~~~~~~~~~~~~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~ 302 (551)
+.++. ..++++++++.+...+++++|||+|++|+|+|..|+++|.+|+++++.+++++.+++++.+.+.+.+++.||+
T Consensus 158 ~~~~~~~~~v~~~~~~~~~~~~~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~ 237 (476)
T 3lad_A 158 PPAPVDQDVIVDSTGALDFQNVPGKLGVIGAGVIGLELGSVWARLGAEVTVLEAMDKFLPAVDEQVAKEAQKILTKQGLK 237 (476)
T ss_dssp TTSCCCSSSEEEHHHHTSCSSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTTSCHHHHHHHHHHHHHTTEE
T ss_pred CCCCCCcccEEechhhhccccCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCcccCHHHHHHHHHHHHhCCCE
Confidence 65553 3578889999888889999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCcccEEEEEcCCceEEEEECCC---eEEEeeEEEEecCcCCCCCCCCccccCeeecCCCCeEeCCCCCCCCCcEEEe
Q 008860 303 FHTEESPQAILKSTDGSLSVKTNKG---TVDGFSHVMFATGRRPNTKNLGLEKVGVKMTKNGAIEVDEYSGTAVPSIWAV 379 (551)
Q Consensus 303 i~~~~~v~~i~~~~~~~~~V~~~~G---~~i~~d~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~t~~~~vya~ 379 (551)
++++++|++++.++++ +.+.+.++ +++++|.||+|+|++|+++++.++..+++++++|+|.||+++||++|||||+
T Consensus 238 v~~~~~v~~i~~~~~~-~~v~~~~~~g~~~~~~D~vi~a~G~~p~~~~l~~~~~g~~~~~~G~i~vd~~~~t~~~~Iya~ 316 (476)
T 3lad_A 238 ILLGARVTGTEVKNKQ-VTVKFVDAEGEKSQAFDKLIVAVGRRPVTTDLLAADSGVTLDERGFIYVDDYCATSVPGVYAI 316 (476)
T ss_dssp EEETCEEEEEEECSSC-EEEEEESSSEEEEEEESEEEECSCEEECCTTCCSSCCSCCBCTTSCBCCCTTSBCSSTTEEEC
T ss_pred EEECCEEEEEEEcCCE-EEEEEEeCCCcEEEECCEEEEeeCCcccCCCCCccccCccccCCCCEeeCCCcccCCCCEEEE
Confidence 9999999999987666 66777654 5799999999999999998776889999999999999999999999999999
Q ss_pred CcCCCCCCChHHHHHhHHHHHHHHcCCCCCCCCCCCccEEEecCCceEEeeCCHHHHHhcCCCeEEEEeeccCccccccc
Q 008860 380 GDVTDRINLTPVALMEGGALAKTLFQAEPTKPDYSAVPSAVFSQPPIGQVGLSEEQAIQEYGDIDVFTANFRPLKATLSG 459 (551)
Q Consensus 380 GD~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~~~~~~~~~~~~~vGl~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 459 (551)
|||++.+.+++.|..||+++|+||+|... ..++..+|+++|++|+++++|+||+||++++.++.+...++....++...
T Consensus 317 GD~~~~~~~~~~A~~~g~~aa~~i~g~~~-~~~~~~~p~~~~~~~~~a~vGlte~~a~~~g~~~~~~~~~~~~~~~~~~~ 395 (476)
T 3lad_A 317 GDVVRGAMLAHKASEEGVVVAERIAGHKA-QMNYDLIPAVIYTHPEIAGVGKTEQALKAEGVAINVGVFPFAASGRAMAA 395 (476)
T ss_dssp GGGSSSCCCHHHHHHHHHHHHHHHHHCCC-CCCTTCCCEEECSSSEEEEEECCHHHHHHTTCCEEEEEEEGGGCHHHHHH
T ss_pred EccCCCcccHHHHHHHHHHHHHHhcCCCc-ccCCCCCCEEEECcCCEEEeeCCHHHHHhcCCCEEEEEEeccccchheec
Confidence 99999899999999999999999998653 45788899999999999999999999999988898888888888888777
Q ss_pred CCCcEEEEEEEECCCCeEEEEEEECCChhHHHHHHHHHHHCCCCHHHHccCcccCCCchHHHHHHHh
Q 008860 460 LPDRIFMKLVLCAKTNKVLGLHMCGEDAPEIVQGFAVAVKAGLTKADFDATVGVHPTAAEEFVTLRT 526 (551)
Q Consensus 460 ~~~~~~~kl~~~~~~~~ilG~~~~g~~~~e~i~~~~~~i~~~~~~~~l~~~~~~~pt~~e~~~~~~~ 526 (551)
+.+.+|+|+++|+++|+|||+|++|+++.|+|+.+++||++|+|++||.+++++|||++|++.++..
T Consensus 396 ~~~~~~~k~~~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~~~ 462 (476)
T 3lad_A 396 NDTAGFVKVIADAKTDRVLGVHVIGPSAAELVQQGAIAMEFGTSAEDLGMMVFAHPALSEALHEAAL 462 (476)
T ss_dssp TCCCCEEEEEEETTTCBEEEEEEEETTHHHHHHHHHHHHHHTCBHHHHHTSCCCSSCSHHHHHHHHH
T ss_pred CCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCcHHHHhcCccCCCChHHHHHHHHH
Confidence 7788999999999999999999999999999999999999999999999999999999999877544
|
| >1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-70 Score=582.32 Aligned_cols=447 Identities=29% Similarity=0.448 Sum_probs=400.4
Q ss_pred CCCCCccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhhccCC
Q 008860 68 PSHYDFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDESNGF 147 (551)
Q Consensus 68 ~~~~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~ 147 (551)
+|+.+|||+|||||++|+++|..|++.|++|+|||+ ...+||+|.+.||+|++.++...+..+.+.....+
T Consensus 2 ~m~~~~dVvIIGaG~aGl~aA~~l~~~G~~V~liE~---------~~~~GG~~~~~g~~psk~ll~~~~~~~~~~~~~~~ 72 (482)
T 1ojt_A 2 SADAEYDVVVLGGGPGGYSAAFAAADEGLKVAIVER---------YKTLGGVCLNVGCIPSKALLHNAAVIDEVRHLAAN 72 (482)
T ss_dssp CSEEEEEEEEECCSHHHHHHHHHHHHTTCCEEEEES---------SSCSSHHHHHHSHHHHHHHHHHHHHHHHHHHGGGG
T ss_pred CCCCcCCEEEECCCHHHHHHHHHHHhCCCeEEEEeC---------CCCCCCceeeecccchHHHHHHHHHHHHHHHHHhC
Confidence 455679999999999999999999999999999992 36799999999999999998888777777777777
Q ss_pred CcccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEeEEEEecCCEEEE---cC------------EEEEeCe
Q 008860 148 GWKYGTEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIEGRGKIVDPHTVDV---DG------------KLYSARH 212 (551)
Q Consensus 148 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~i~~~~v~v---~g------------~~~~~d~ 212 (551)
|+... ...+++..+..+.......+...+...+.+.+++++.+++.+++++.+.+ ++ ..+.||+
T Consensus 73 gi~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~~~~~~v~v~~~~g~~~~~~~~~g~~~~i~ad~ 151 (482)
T 1ojt_A 73 GIKYP-EPELDIDMLRAYKDGVVSRLTGGLAGMAKSRKVDVIQGDGQFLDPHHLEVSLTAGDAYEQAAPTGEKKIVAFKN 151 (482)
T ss_dssp TCCCC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTEEEEEEEEEEETTEEEEEEEEEEEEEEE
T ss_pred CcccC-CCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEeeEEEEccCCEEEEEecCCcccccccccCcceEEEcCE
Confidence 76653 45678999988888788877777777888889999999988888887776 35 6799999
Q ss_pred EEEcCCCCCCCCC-CCCCCceecchhhhcCCCCCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCCCCCHHHHHH
Q 008860 213 ILISVGGRPFIPD-IPGSEYAIDSDAALDLPSKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRDF 291 (551)
Q Consensus 213 lviAtG~~p~~p~-i~g~~~~~~~~~~~~~~~~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~ 291 (551)
+|+|||++|..|+ ++....++++++++.+.+.+++++|||+|++|+|+|..|+++|.+|+++++.+++++.+++++.+.
T Consensus 152 lViAtGs~p~~~~~i~~~~~v~~~~~~~~~~~~~~~vvViGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l~~~~~~~~~~ 231 (482)
T 1ojt_A 152 CIIAAGSRVTKLPFIPEDPRIIDSSGALALKEVPGKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDGLMQGADRDLVKV 231 (482)
T ss_dssp EEECCCEEECCCSSCCCCTTEECHHHHTTCCCCCSEEEEESCSHHHHHHHHHHHHHTCEEEEECSSSSSSTTSCHHHHHH
T ss_pred EEECCCCCCCCCCCCCccCcEEcHHHHhcccccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEECCccccccCHHHHHH
Confidence 9999999998887 664335889999998888899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCcEEEcCcccEEEEEcCCceEEEEECC----CeEEEeeEEEEecCcCCCCCCCCccccCeeecCCCCeEeCC
Q 008860 292 VAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTNK----GTVDGFSHVMFATGRRPNTKNLGLEKVGVKMTKNGAIEVDE 367 (551)
Q Consensus 292 l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~----G~~i~~d~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~ 367 (551)
+.+.|++.||+++++++|++++.++++ +.|.+.+ |+++++|.||+|+|++|++++++++.++++++++|+|.||+
T Consensus 232 l~~~l~~~gV~i~~~~~v~~i~~~~~~-~~v~~~~~~~~g~~~~~D~vv~a~G~~p~~~~l~~~~~gl~~~~~G~i~vd~ 310 (482)
T 1ojt_A 232 WQKQNEYRFDNIMVNTKTVAVEPKEDG-VYVTFEGANAPKEPQRYDAVLVAAGRAPNGKLISAEKAGVAVTDRGFIEVDK 310 (482)
T ss_dssp HHHHHGGGEEEEECSCEEEEEEEETTE-EEEEEESSSCCSSCEEESCEEECCCEEECGGGTTGGGTTCCCCTTSCCCCCT
T ss_pred HHHHHHhcCCEEEECCEEEEEEEcCCe-EEEEEeccCCCceEEEcCEEEECcCCCcCCCCCChhhcCceeCCCCCEeeCC
Confidence 999999999999999999999876655 6677766 77899999999999999999877789999999889999999
Q ss_pred CCCCCCCcEEEeCcCCCCCCChHHHHHhHHHHHHHHcCCCCCCCCCCCccEEEecCCceEEeeCCHHHHHhcCCCeEEEE
Q 008860 368 YSGTAVPSIWAVGDVTDRINLTPVALMEGGALAKTLFQAEPTKPDYSAVPSAVFSQPPIGQVGLSEEQAIQEYGDIDVFT 447 (551)
Q Consensus 368 ~~~t~~~~vya~GD~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~~~~~~~~~~~~~vGl~~~~a~~~~~~~~~~~ 447 (551)
++||+.|+|||+|||++.+++++.|..||+++|.||+|.. ...+|..+|+++|++|+++++|++|++|++.+.++.+..
T Consensus 311 ~~~t~~~~IyA~GD~~~~~~l~~~A~~~g~~aa~~i~g~~-~~~~~~~~p~~~~~~~~~a~vG~te~~a~~~g~~~~~~~ 389 (482)
T 1ojt_A 311 QMRTNVPHIYAIGDIVGQPMLAHKAVHEGHVAAENCAGHK-AYFDARVIPGVAYTSPEVAWVGETELSAKASARKITKAN 389 (482)
T ss_dssp TSBCSSTTEEECGGGTCSSCCHHHHHHHHHHHHHHHTTCC-CCCCCCCCCEEECSSSCEEEEECCHHHHHHHTCCEEEEE
T ss_pred CcccCCCCEEEEEcccCCCccHHHHHHHHHHHHHHHcCCC-ccCCCCCCCEEEEcCCCeEEEeCCHHHHHhcCCCEEEEE
Confidence 9999999999999999988999999999999999999854 345678899999999999999999999999888898888
Q ss_pred eeccCcccccccCCCcEEEEEEEECCCCeEEEEEEECCChhHHHHHHHHHHHCCCCHHHHccCcccCCCchHHHHHHHh
Q 008860 448 ANFRPLKATLSGLPDRIFMKLVLCAKTNKVLGLHMCGEDAPEIVQGFAVAVKAGLTKADFDATVGVHPTAAEEFVTLRT 526 (551)
Q Consensus 448 ~~~~~~~~~~~~~~~~~~~kl~~~~~~~~ilG~~~~g~~~~e~i~~~~~~i~~~~~~~~l~~~~~~~pt~~e~~~~~~~ 526 (551)
.++....++...+.+.+|+|+++|+++|+|+|+|++|+++.|+|+.+++||++++|++||.+++++|||++|.+.++..
T Consensus 390 ~~~~~~~~~~~~~~~~~~~k~~~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~~~~~l~~~~~~~Pt~~e~~~~a~~ 468 (482)
T 1ojt_A 390 FPWAASGRAIANGCDKPFTKLIFDAETGRIIGGGIVGPNGGDMIGEVCLAIEMGCDAADIGKTIHPHPTLGESIGMAAE 468 (482)
T ss_dssp EEGGGCHHHHHTTCCSCEEEEEEETTTCBEEEEEEESTTHHHHHHHHHHHHHTTCBHHHHHTSCCCSSSSTTHHHHHHH
T ss_pred EEcCcchHHhhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcCccCCCCHHHHHHHHHH
Confidence 8888877777667788999999999999999999999999999999999999999999999999999999999887543
|
| >2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-70 Score=579.00 Aligned_cols=440 Identities=31% Similarity=0.499 Sum_probs=398.2
Q ss_pred CccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhhccCCCccc
Q 008860 72 DFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDESNGFGWKY 151 (551)
Q Consensus 72 ~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~~ 151 (551)
++||+|||||+||+++|..|++.|++|+||| +..+||+|.+.||+|++.++..+...+.+.....||+.
T Consensus 6 ~~dvvIIG~G~aG~~aA~~l~~~g~~V~lie----------~~~~GG~~~~~g~iP~k~l~~~~~~~~~~~~~~~~g~~- 74 (464)
T 2eq6_A 6 TYDLIVIGTGPGGYHAAIRAAQLGLKVLAVE----------AGEVGGVCLNVGCIPTKALLHAAETLHHLKVAEGFGLK- 74 (464)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEEE----------SSCTTHHHHHTSHHHHHHHHHHHHHHHHHHHHGGGTEE-
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCeEEEEe----------CCCCCCCCCCcChHHHHHHHHHHHHHHHHHhHHhcCCC-
Confidence 5899999999999999999999999999999 44599999999999999999888877777777778876
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEeEEEEecCCEEEEcCEEEEeCeEEEcCCCCCCCCC-CCCCC
Q 008860 152 GTEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIEGRGKIVDPHTVDVDGKLYSARHILISVGGRPFIPD-IPGSE 230 (551)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~i~~~~v~v~g~~~~~d~lviAtG~~p~~p~-i~g~~ 230 (551)
....++|..+..+..+..+.+...+...+++.+++++.+++.+++++++.++++.+.||+||+|||++|..|+ +++..
T Consensus 75 -~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~~~~~~v~v~g~~~~~d~lViATGs~p~~p~gi~~~~ 153 (464)
T 2eq6_A 75 -AKPELDLKKLGGWRDQVVKKLTGGVGTLLKGNGVELLRGFARLVGPKEVEVGGERYGAKSLILATGSEPLELKGFPFGE 153 (464)
T ss_dssp -CCCEECHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESCEEEEETTEEEETTEEEEEEEEEECCCEEECCBTTBCCSS
T ss_pred -CCCCcCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEeeeEEEccCCEEEEccEEEEeCEEEEcCCCCCCCCCCCCCCC
Confidence 4567899999988888888877777778888899999999888898988887788999999999999999886 87754
Q ss_pred ceecchhhhcCCC-CCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCCCCCHHHHHHHHHHHHhcCcEEEcCccc
Q 008860 231 YAIDSDAALDLPS-KPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRDFVAEQMSLRGIEFHTEESP 309 (551)
Q Consensus 231 ~~~~~~~~~~~~~-~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~~~~~v 309 (551)
.++++++++++.. .+++++|||+|++|+|+|..|+++|.+|+++++.+.+++.+++++.+.+.+.+++.||+++++++|
T Consensus 154 ~v~~~~~~~~l~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~gV~i~~~~~v 233 (464)
T 2eq6_A 154 DVWDSTRALKVEEGLPKRLLVIGGGAVGLELGQVYRRLGAEVTLIEYMPEILPQGDPETAALLRRALEKEGIRVRTKTKA 233 (464)
T ss_dssp SEECHHHHTCGGGCCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHTTCEEECSEEE
T ss_pred cEEcHHHHHhhhhhcCCEEEEECCCHHHHHHHHHHHHCCCeEEEEEcCCccccccCHHHHHHHHHHHHhcCCEEEcCCEE
Confidence 6889999888876 789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEcCCceEEEEEC-C--Ce--EEEeeEEEEecCcCCCCCCCCccccCeeecCCCCeEeCCCCCCCCCcEEEeCcCCC
Q 008860 310 QAILKSTDGSLSVKTN-K--GT--VDGFSHVMFATGRRPNTKNLGLEKVGVKMTKNGAIEVDEYSGTAVPSIWAVGDVTD 384 (551)
Q Consensus 310 ~~i~~~~~~~~~V~~~-~--G~--~i~~d~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~t~~~~vya~GD~~~ 384 (551)
++++.++++ +.|.+. + |+ ++++|.||+|+|++|+++++.++..|++++++|+|.||+++||+.|+|||+|||++
T Consensus 234 ~~i~~~~~~-~~v~~~~~~~g~~~~i~~D~vv~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~t~~~~Iya~GD~~~ 312 (464)
T 2eq6_A 234 VGYEKKKDG-LHVRLEPAEGGEGEEVVVDKVLVAVGRKPRTEGLGLEKAGVKVDERGFIRVNARMETSVPGVYAIGDAAR 312 (464)
T ss_dssp EEEEEETTE-EEEEEEETTCCSCEEEEESEEEECSCEEESCTTSSHHHHTCCBCTTSCBCCCTTCBCSSTTEEECGGGTC
T ss_pred EEEEEeCCE-EEEEEeecCCCceeEEEcCEEEECCCcccCCCCCChhhcCceecCCCCEEECCCcccCCCCEEEEeccCC
Confidence 999876655 667765 6 76 79999999999999999987678889999888999999999999999999999999
Q ss_pred CCCChHHHHHhHHHHHHHHcCCCCCCCCCCCccEEEecCCceEEeeCCHHHHHhcCCCeEEEEeeccCcccccccCCCcE
Q 008860 385 RINLTPVALMEGGALAKTLFQAEPTKPDYSAVPSAVFSQPPIGQVGLSEEQAIQEYGDIDVFTANFRPLKATLSGLPDRI 464 (551)
Q Consensus 385 ~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~~~~~~~~~~~~~vGl~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (551)
.+++++.|..||+++|.||+|.+ ...++. +|+++|++|+++++|++|++|++.+.++.+...++....++...+++.+
T Consensus 313 ~~~l~~~A~~~g~~aa~~i~g~~-~~~~~~-~p~~~~~~~~~a~vG~~e~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g 390 (464)
T 2eq6_A 313 PPLLAHKAMREGLIAAENAAGKD-SAFDYQ-VPSVVYTSPEWAGVGLTEEEAKRAGYKVKVGKFPLAASGRALTLGGAEG 390 (464)
T ss_dssp SSCCHHHHHHHHHHHHHHHTTCC-CCCCCC-CCEEECSSSEEEEEECCHHHHHHTTCCEEEEEEEGGGCHHHHHTSCCCC
T ss_pred CcccHHHHHHHHHHHHHHhcCCC-cccCCC-CCeEEECCCCEEEEeCCHHHHHhcCCCEEEEEEEcCcchhhhhcCCCcE
Confidence 99999999999999999999854 345677 9999999999999999999999988888888888888777766677789
Q ss_pred EEEEEEECCCCeEEEEEEECCChhHHHHHHHHHHHCCCCHHHHccCcccCCCchHHHHHHHh
Q 008860 465 FMKLVLCAKTNKVLGLHMCGEDAPEIVQGFAVAVKAGLTKADFDATVGVHPTAAEEFVTLRT 526 (551)
Q Consensus 465 ~~kl~~~~~~~~ilG~~~~g~~~~e~i~~~~~~i~~~~~~~~l~~~~~~~pt~~e~~~~~~~ 526 (551)
|+|+++|+++|+|+|+|++|+.+.|+|+.+++||++++|++||.+++++|||++|.+.++..
T Consensus 391 ~~k~~~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~~~~~l~~~~~~~Pt~~e~~~~~~~ 452 (464)
T 2eq6_A 391 MVKVVGDEETDLLLGVFIVGPQAGELIAEAALALEMGATLTDLALTVHPHPTLSESLMEAAE 452 (464)
T ss_dssp EEEEEEETTTCBEEEEEEEETTHHHHHHHHHHHHHTTCBHHHHHHSCCCSSCTTHHHHHHHH
T ss_pred EEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcCcCCCCChHHHHHHHHH
Confidence 99999998899999999999999999999999999999999999999999999999887654
|
| >2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-70 Score=577.68 Aligned_cols=444 Identities=26% Similarity=0.439 Sum_probs=396.1
Q ss_pred CccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhh-ccCCCcc
Q 008860 72 DFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDE-SNGFGWK 150 (551)
Q Consensus 72 ~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~-~~~~g~~ 150 (551)
+|||+|||||+||+++|.+|++.|++|+|||+ ...+||+|.+.||+|++.++..++..+.+.. +..+|+.
T Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lie~---------~~~~GG~~~~~g~~psk~l~~~~~~~~~~~~~~~~~g~~ 72 (468)
T 2qae_A 2 PYDVVVIGGGPGGYVASIKAAQLGMKTACVEK---------RGALGGTCLNVGCIPSKALLHATHLYHDAHANFARYGLM 72 (468)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTTCCEEEEES---------SSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHTHHHHTEE
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCeEEEEeC---------CCCcCCcCCCcCcHhHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 58999999999999999999999999999992 3479999999999999999888776666654 5566665
Q ss_pred cCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEeEEEEecCCEEEE---cC--EEEEeCeEEEcCCCCCCCCC
Q 008860 151 YGTEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIEGRGKIVDPHTVDV---DG--KLYSARHILISVGGRPFIPD 225 (551)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~i~~~~v~v---~g--~~~~~d~lviAtG~~p~~p~ 225 (551)
......++|..+..+.....+.+...+...+.+.+++++.+++.+++++.+.+ ++ ..+.||++|+|||++|..|+
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~g~~~~i~~~~~~v~~~~G~~~~~~~d~lviAtG~~p~~p~ 152 (468)
T 2qae_A 73 GGEGVTMDSAKMQQQKERAVKGLTGGVEYLFKKNKVTYYKGEGSFETAHSIRVNGLDGKQEMLETKKTIIATGSEPTELP 152 (468)
T ss_dssp CGGGCEECHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEEEEETTEEEEEETTSCEEEEEEEEEEECCCEEECCBT
T ss_pred cCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEeeCCEEEEEecCCceEEEEcCEEEECCCCCcCCCC
Confidence 32234578999988888888887777778888889999999988899888777 45 78999999999999999999
Q ss_pred CCCCC--ceecchhhhcCCCCCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCCCCCHHHHHHHHHHH-HhcCcE
Q 008860 226 IPGSE--YAIDSDAALDLPSKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRDFVAEQM-SLRGIE 302 (551)
Q Consensus 226 i~g~~--~~~~~~~~~~~~~~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l-~~~Gv~ 302 (551)
++|.+ .++++++++.+...+++++|||+|++|+|+|..|+++|.+|+++++.+.+++.+++++.+.+.+.+ ++.||+
T Consensus 153 ~~g~~~~~v~t~~~~~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~d~~~~~~l~~~l~~~~gv~ 232 (468)
T 2qae_A 153 FLPFDEKVVLSSTGALALPRVPKTMVVIGGGVIGLELGSVWARLGAEVTVVEFAPRCAPTLDEDVTNALVGALAKNEKMK 232 (468)
T ss_dssp TBCCCSSSEECHHHHHTCSSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHHTCCE
T ss_pred CCCCCcCceechHHHhhcccCCceEEEECCCHHHHHHHHHHHHhCCEEEEEecCCcccccCCHHHHHHHHHHHhhcCCcE
Confidence 88865 488999999888889999999999999999999999999999999999999999999999999999 999999
Q ss_pred EEcCcccEEEEEcCCceEEEEEC--CC--eEEEeeEEEEecCcCCCCCCCCccccCeeecCCCCeEeCCCCCCCCCcEEE
Q 008860 303 FHTEESPQAILKSTDGSLSVKTN--KG--TVDGFSHVMFATGRRPNTKNLGLEKVGVKMTKNGAIEVDEYSGTAVPSIWA 378 (551)
Q Consensus 303 i~~~~~v~~i~~~~~~~~~V~~~--~G--~~i~~d~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~t~~~~vya 378 (551)
++++++|++++.++++ +.+.+. +| +++++|.||+|+|++|++++++++..+++++++|+|.||+++||+.|+|||
T Consensus 233 i~~~~~v~~i~~~~~~-~~v~~~~~~g~~~~i~~D~vv~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~t~~~~IyA 311 (468)
T 2qae_A 233 FMTSTKVVGGTNNGDS-VSLEVEGKNGKRETVTCEALLVSVGRRPFTGGLGLDKINVAKNERGFVKIGDHFETSIPDVYA 311 (468)
T ss_dssp EECSCEEEEEEECSSS-EEEEEECC---EEEEEESEEEECSCEEECCTTSCHHHHTCCBCTTSCBCCCTTSBCSSTTEEE
T ss_pred EEeCCEEEEEEEcCCe-EEEEEEcCCCceEEEECCEEEECCCcccCCCCCCchhcCCccCCCCCEeECCCcccCCCCEEE
Confidence 9999999999887655 666665 66 679999999999999999987778889999988999999999999999999
Q ss_pred eCcCCC-CCCChHHHHHhHHHHHHHHcCCCCCCCCCCCccEEEecCCceEEeeCCHHHHHhcCCCeEEEEeeccCccccc
Q 008860 379 VGDVTD-RINLTPVALMEGGALAKTLFQAEPTKPDYSAVPSAVFSQPPIGQVGLSEEQAIQEYGDIDVFTANFRPLKATL 457 (551)
Q Consensus 379 ~GD~~~-~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~~~~~~~~~~~~~vGl~~~~a~~~~~~~~~~~~~~~~~~~~~ 457 (551)
+|||++ .+++++.|..||+++|.||+|.+ ...+|..+|+++|++|+++++|++|++|++.+.++.+...++....++.
T Consensus 312 ~GD~~~~~~~~~~~A~~~g~~aa~~i~~~~-~~~~~~~~p~~~~~~~~~a~vG~~e~~a~~~g~~~~~~~~~~~~~~~~~ 390 (468)
T 2qae_A 312 IGDVVDKGPMLAHKAEDEGVACAEILAGKP-GHVNYGVIPAVIYTMPEVASVGKSEDELKKEGVAYKVGKFPFNANSRAK 390 (468)
T ss_dssp CGGGBSSSCSCHHHHHHHHHHHHHHHTTCC-CCCCTTSCCEEECSSSEEEEEECCHHHHHHTTCCEEEEEEEGGGCHHHH
T ss_pred eeccCCCCCccHhHHHHHHHHHHHHHcCCC-ccCCCCCCCEEEECCCceEEEeCCHHHHHhcCCCEEEEEEecccchhhh
Confidence 999999 88999999999999999999854 3456788999999999999999999999998888999888888888877
Q ss_pred ccCCCcEEEEEEEECCCCeEEEEEEECCChhHHHHHHHHHHHCCCCHHHHccCcccCCCchHHHHHHHh
Q 008860 458 SGLPDRIFMKLVLCAKTNKVLGLHMCGEDAPEIVQGFAVAVKAGLTKADFDATVGVHPTAAEEFVTLRT 526 (551)
Q Consensus 458 ~~~~~~~~~kl~~~~~~~~ilG~~~~g~~~~e~i~~~~~~i~~~~~~~~l~~~~~~~pt~~e~~~~~~~ 526 (551)
..+.+.+|+|+++|+++|+|+|+|++|+.+.|+|+.+++||++++|++||.+++++|||++|.+.++..
T Consensus 391 ~~~~~~~~~kl~~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~~~~~l~~~~~~~Pt~~e~~~~~~~ 459 (468)
T 2qae_A 391 AVSTEDGFVKVLVDKATDRILGVHIVCTTAGELIGEACLAMEYGASSEDVGRTCHAHPTMSEALKEACM 459 (468)
T ss_dssp HTTCCCCEEEEEEETTTCBEEEEEEEETTHHHHHHHHHHHHHTTCBHHHHHTSCCCSSCTHHHHHHHHH
T ss_pred hcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhcccCCCCHHHHHHHHHH
Confidence 677788999999999899999999999999999999999999999999999999999999999877543
|
| >1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-69 Score=570.57 Aligned_cols=441 Identities=30% Similarity=0.506 Sum_probs=395.7
Q ss_pred CccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhhccCCCccc
Q 008860 72 DFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDESNGFGWKY 151 (551)
Q Consensus 72 ~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~~ 151 (551)
+|||+|||||+||+++|.+|++.|++|+||| +..+||+|.+.||+|++.++...+..+.+.....+|+..
T Consensus 3 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lie----------~~~~gG~~~~~g~~p~k~l~~~~~~~~~~~~~~~~g~~~ 72 (455)
T 1ebd_A 3 ETETLVVGAGPGGYVAAIRAAQLGQKVTIVE----------KGNLGGVCLNVGCIPSKALISASHRYEQAKHSEEMGIKA 72 (455)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHTTCCEEEEE----------SSCTTHHHHHTSHHHHHHHHHHHHHHHHHHTCGGGTEEC
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCeEEEEE----------CCCCCCcCcCcCchhhHHHHHHHHHHHHHHHHHhcCccc
Confidence 5899999999999999999999999999999 447899999999999999988887777777777777764
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEeEEEEecCCEEEE---cC-EEEEeCeEEEcCCCCCCCCCCC
Q 008860 152 GTEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIEGRGKIVDPHTVDV---DG-KLYSARHILISVGGRPFIPDIP 227 (551)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~i~~~~v~v---~g-~~~~~d~lviAtG~~p~~p~i~ 227 (551)
. ....+|..+..+..+..+.+...+...+.+.+++++.+++.+++++.+.+ ++ +.+.||+||+|||++|..|+++
T Consensus 73 ~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~id~~~v~V~~~~G~~~i~~d~lViATGs~p~~~~~~ 151 (455)
T 1ebd_A 73 E-NVTIDFAKVQEWKASVVKKLTGGVEGLLKGNKVEIVKGEAYFVDANTVRVVNGDSAQTYTFKNAIIATGSRPIELPNF 151 (455)
T ss_dssp C-SCEECHHHHHHHHHHHHHHHHHHHHHHHHTTTCEEEESEEEEEETTEEEEEETTEEEEEECSEEEECCCEEECCBTTB
T ss_pred C-CCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCeEEEEeCCCcEEEEeCEEEEecCCCCCCCCCC
Confidence 3 34578888888887777777777778888889999999988888887777 35 6899999999999999999888
Q ss_pred CCC-ceecchhhhcCCCCCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCCCCCHHHHHHHHHHHHhcCcEEEcC
Q 008860 228 GSE-YAIDSDAALDLPSKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRDFVAEQMSLRGIEFHTE 306 (551)
Q Consensus 228 g~~-~~~~~~~~~~~~~~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~~~ 306 (551)
|.+ .++++++.+.+...+++++|||+|++|+|+|..|+++|.+|+++++.+.+++.+++++.+.+.+.+++.||+++++
T Consensus 152 g~~~~v~~~~~~~~~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~gv~i~~~ 231 (455)
T 1ebd_A 152 KFSNRILDSTGALNLGEVPKSLVVIGGGYIGIELGTAYANFGTKVTILEGAGEILSGFEKQMAAIIKKRLKKKGVEVVTN 231 (455)
T ss_dssp CCCSSEECHHHHHTCSSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTTSCHHHHHHHHHHHHHTTCEEEES
T ss_pred CccceEecHHHHhccccCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCccccccCHHHHHHHHHHHHHCCCEEEeC
Confidence 864 3788888888888899999999999999999999999999999999999999899999999999999999999999
Q ss_pred cccEEEEEcCCceEEEEEC---CCeEEEeeEEEEecCcCCCCCCCCccccCeeecCCCCeEeCCCCCCCCCcEEEeCcCC
Q 008860 307 ESPQAILKSTDGSLSVKTN---KGTVDGFSHVMFATGRRPNTKNLGLEKVGVKMTKNGAIEVDEYSGTAVPSIWAVGDVT 383 (551)
Q Consensus 307 ~~v~~i~~~~~~~~~V~~~---~G~~i~~d~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~t~~~~vya~GD~~ 383 (551)
++|++++.++++ +.+.+. +++++++|.||+|+|++|++++++++..+++++++|+|.||+++||+.|+|||+|||+
T Consensus 232 ~~v~~i~~~~~~-~~v~~~~~g~~~~~~~D~vv~a~G~~p~~~~l~~~~~g~~~~~~G~i~vd~~~~t~~~~Iya~GD~~ 310 (455)
T 1ebd_A 232 ALAKGAEEREDG-VTVTYEANGETKTIDADYVLVTVGRRPNTDELGLEQIGIKMTNRGLIEVDQQCRTSVPNIFAIGDIV 310 (455)
T ss_dssp EEEEEEEEETTE-EEEEEEETTEEEEEEESEEEECSCEEESCSSSSTTTTTCCBCTTSCBCCCTTCBCSSTTEEECGGGS
T ss_pred CEEEEEEEeCCe-EEEEEEeCCceeEEEcCEEEECcCCCcccCcCChhhcCCccCCCCCEeeCCCcccCCCCEEEEeccC
Confidence 999999876655 556654 4567999999999999999998777888999998899999999999999999999999
Q ss_pred CCCCChHHHHHhHHHHHHHHcCCCCCCCCCCCccEEEecCCceEEeeCCHHHHHhcCCCeEEEEeeccCcccccccCCCc
Q 008860 384 DRINLTPVALMEGGALAKTLFQAEPTKPDYSAVPSAVFSQPPIGQVGLSEEQAIQEYGDIDVFTANFRPLKATLSGLPDR 463 (551)
Q Consensus 384 ~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~~~~~~~~~~~~~vGl~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (551)
+.+++++.|..||+++|+||+|.. ...+|..+|+++|++|+++++|++|++|++.+.++.+...++....++...+.+.
T Consensus 311 ~~~~~~~~A~~~g~~aa~~i~~~~-~~~~~~~~p~~~~~~~~~a~vG~~e~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~ 389 (455)
T 1ebd_A 311 PGPALAHKASYEGKVAAEAIAGHP-SAVDYVAIPAVVFSDPECASVGYFEQQAKDEGIDVIAAKFPFAANGRALALNDTD 389 (455)
T ss_dssp SSCCCHHHHHHHHHHHHHHHTSCC-CCCCCSCCCEEECSSSCEEEEECCHHHHHTTTCCEEEEEEEGGGCHHHHHHTCCC
T ss_pred CCcccHHHHHHHHHHHHHHHcCCC-ccCCCCCCCEEEECCCceEEEeCCHHHHHhcCCCEEEEEEEcCcchHHhhcCCCc
Confidence 998999999999999999999854 3456788999999999999999999999988878998888888877776667788
Q ss_pred EEEEEEEECCCCeEEEEEEECCChhHHHHHHHHHHHCCCCHHHHccCcccCCCchHHHHHHH
Q 008860 464 IFMKLVLCAKTNKVLGLHMCGEDAPEIVQGFAVAVKAGLTKADFDATVGVHPTAAEEFVTLR 525 (551)
Q Consensus 464 ~~~kl~~~~~~~~ilG~~~~g~~~~e~i~~~~~~i~~~~~~~~l~~~~~~~pt~~e~~~~~~ 525 (551)
+|+|+++|+++|+|+|+|++|+++.|+|+.+++||++++|++||.+++++|||++|.+.++.
T Consensus 390 ~~~k~~~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~~~~~l~~~~~~~Pt~~e~~~~~~ 451 (455)
T 1ebd_A 390 GFLKLVVRKEDGVIIGAQIIGPNASDMIAELGLAIEAGMTAEDIALTIHAHPTLGEIAMEAA 451 (455)
T ss_dssp CEEEEEEETTTTEEEEEEEESTTHHHHHHHHHHHHHHTCBHHHHHHSCCCTTSSTHHHHHHH
T ss_pred EEEEEEEECCCCEEEEEEEeCCCHHHHHHHHHHHHHCCCCHHHHhhcccCCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999988754
|
| >1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-69 Score=577.63 Aligned_cols=444 Identities=24% Similarity=0.368 Sum_probs=399.5
Q ss_pred CccEEEECCChHHHHHHHHHHhC---CCcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhhccCCC
Q 008860 72 DFDLFTIGAGSGGVRASRFAANF---GASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDESNGFG 148 (551)
Q Consensus 72 ~~dVvIIGgG~aGl~aA~~l~~~---G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g 148 (551)
+|||+|||||++|+++|.+|++. |++|+||| +..+||+|.+.||+|++.++..+...+.+..+..+|
T Consensus 2 ~~dVvIIGgG~aGl~aA~~l~~~~~~G~~V~liE----------~~~~GG~~~~~g~~psk~l~~~a~~~~~~~~~~~~g 71 (499)
T 1xdi_A 2 VTRIVILGGGPAGYEAALVAATSHPETTQVTVID----------CDGIGGAAVLDDCVPSKTFIASTGLRTELRRAPHLG 71 (499)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHHCTTTEEEEEEE----------SSCTTHHHHHTSHHHHHHHHHHHHHHHHHTTTTTTT
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCCcCEEEEEe----------CCCcCCcccCcCccchHHHHHHHHHHHHHHHHHhCC
Confidence 48999999999999999999998 99999999 444999999999999999998888777777777777
Q ss_pred ccc-CCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEeEEEEecC------CEEEE---cCE--EEEeCeEEEc
Q 008860 149 WKY-GTEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIEGRGKIVDP------HTVDV---DGK--LYSARHILIS 216 (551)
Q Consensus 149 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~i~~------~~v~v---~g~--~~~~d~lviA 216 (551)
+.. .....++|..+..+..+....+...+...+++.+++++.+++.++++ ..+.+ +++ .+.||++|+|
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~i~~~~~~~~~~~~V~~~~g~~~~~~~d~lviA 151 (499)
T 1xdi_A 72 FHIDFDDAKISLPQIHARVKTLAAAQSADITAQLLSMGVQVIAGRGELIDSTPGLARHRIKATAADGSTSEHEADVVLVA 151 (499)
T ss_dssp BC------CBCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESEEEECCSSSCCSSEEEEEECTTSCEEEEEESEEEEC
T ss_pred CccccCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEecCcccCCCCEEEEEeCCCcEEEEEeCEEEEc
Confidence 752 23456789999988888888887778888888999999999888887 66666 454 7999999999
Q ss_pred CCCCCCCCCCCCCC--ceecchhhhcCCCCCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCCCCCHHHHHHHHH
Q 008860 217 VGGRPFIPDIPGSE--YAIDSDAALDLPSKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRDFVAE 294 (551)
Q Consensus 217 tG~~p~~p~i~g~~--~~~~~~~~~~~~~~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~ 294 (551)
||++|..|+++|.+ .++++++++.+...+++++|||+|++|+|+|..|.++|.+|+++++.+.+++.+++++.+.+.+
T Consensus 152 TGs~p~~p~i~g~~~~~v~~~~~~~~~~~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~~d~~~~~~l~~ 231 (499)
T 1xdi_A 152 TGASPRILPSAQPDGERILTWRQLYDLDALPDHLIVVGSGVTGAEFVDAYTELGVPVTVVASQDHVLPYEDADAALVLEE 231 (499)
T ss_dssp CCEEECCCGGGCCCSSSEEEGGGGGGCSSCCSSEEEESCSHHHHHHHHHHHHTTCCEEEECSSSSSSCCSSHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCcCcEEehhHhhhhhccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCccccccCHHHHHHHHH
Confidence 99999999888864 3788889988888899999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCcEEEcCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCcCCCCCCCCccccCeeecCCCCeEeCCCCCCCCC
Q 008860 295 QMSLRGIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNTKNLGLEKVGVKMTKNGAIEVDEYSGTAVP 374 (551)
Q Consensus 295 ~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~t~~~ 374 (551)
.+++.||+++++++|++++.++++ +.|.+.+|+++++|.||+|+|++|++++++++.+|++++++|+|.||+++||+.|
T Consensus 232 ~l~~~GV~i~~~~~V~~i~~~~~~-v~v~~~~g~~i~aD~Vv~a~G~~p~~~~l~l~~~gl~~~~~G~i~Vd~~~~t~~~ 310 (499)
T 1xdi_A 232 SFAERGVRLFKNARAASVTRTGAG-VLVTMTDGRTVEGSHALMTIGSVPNTSGLGLERVGIQLGRGNYLTVDRVSRTLAT 310 (499)
T ss_dssp HHHHTTCEEETTCCEEEEEECSSS-EEEEETTSCEEEESEEEECCCEEECCSSSCTTTTTCCCBTTTBCCCCSSSBCSST
T ss_pred HHHHCCCEEEeCCEEEEEEEeCCE-EEEEECCCcEEEcCEEEECCCCCcCCCcCCchhcCceECCCCCEEECCCcccCCC
Confidence 999999999999999999987666 7788888989999999999999999998777889999998899999999999999
Q ss_pred cEEEeCcCCCCCCChHHHHHhHHHHHHHHcCCCCCCCCCCCccEEEecCCceEEeeCCHHHHHhcCCCeEEEEeeccCcc
Q 008860 375 SIWAVGDVTDRINLTPVALMEGGALAKTLFQAEPTKPDYSAVPSAVFSQPPIGQVGLSEEQAIQEYGDIDVFTANFRPLK 454 (551)
Q Consensus 375 ~vya~GD~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~~~~~~~~~~~~~vGl~~~~a~~~~~~~~~~~~~~~~~~ 454 (551)
+|||+|||++.+++++.|..||+++|.||+|......+|..+|+++|++|+++++|++|++|++.+.++.+...++....
T Consensus 311 ~IyA~GD~~~~~~l~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~~~~~~~~~a~vG~~e~~a~~~g~~~~~~~~~~~~~~ 390 (499)
T 1xdi_A 311 GIYAAGDCTGLLPLASVAAMQGRIAMYHALGEGVSPIRLRTVAATVFTRPEIAAVGVPQSVIDAGSVAARTIMLPLRTNA 390 (499)
T ss_dssp TEEECSGGGTSCSCHHHHHHHHHHHHHHHTTCCCCCCCGGGCEEEECSSSEEEEEESCHHHHHHTSSCEEEEEEESTTSH
T ss_pred CEEEEeccCCCcccHHHHHHHHHHHHHHhcCCCCccCCCCCCcEEEEecCCceEeCCCHHHHHhCCCCEEEEEEecCccc
Confidence 99999999999899999999999999999986434556888999999999999999999999999888999888888888
Q ss_pred cccccCCCcEEEEEEEECCCCeEEEEEEECCChhHHHHHHHHHHHCCCCHHHHccCcccCCCchHHHHHHHh
Q 008860 455 ATLSGLPDRIFMKLVLCAKTNKVLGLHMCGEDAPEIVQGFAVAVKAGLTKADFDATVGVHPTAAEEFVTLRT 526 (551)
Q Consensus 455 ~~~~~~~~~~~~kl~~~~~~~~ilG~~~~g~~~~e~i~~~~~~i~~~~~~~~l~~~~~~~pt~~e~~~~~~~ 526 (551)
++...+.+.+|+|+++|+++|+|+|++++|+.+.|+|+.+++||++++|++||.+++++|||++|.+.++..
T Consensus 391 ~~~~~~~~~g~~k~~~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~~~~~~l~~~~~~~Pt~~e~~~~~~~ 462 (499)
T 1xdi_A 391 RAKMSEMRHGFVKIFCRRSTGVVIGGVVVAPIASELILPIAVAVQNRITVNELAQTLAVYPSLSGSITEAAR 462 (499)
T ss_dssp HHHHTTCSSCEEEEEEETTTCBEEEEEEEETTHHHHHHHHHHHHHHTCBHHHHHTSBCCSSSTHHHHHHHHH
T ss_pred ceeecCCCceEEEEEEECCCCEEEEEEEECCchHHHHHHHHHHHHCCCCHHHHhcccccCCCchHHHHHHHH
Confidence 877677788999999998899999999999999999999999999999999999999999999999876543
|
| >1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-69 Score=574.11 Aligned_cols=445 Identities=28% Similarity=0.420 Sum_probs=397.7
Q ss_pred CCccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhh--hccCCC
Q 008860 71 YDFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFD--ESNGFG 148 (551)
Q Consensus 71 ~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~--~~~~~g 148 (551)
.+|||+|||||+||+++|..|++.|++|+|||+ ...+||+|.+.||+|++.++..++..+.+. .+..+|
T Consensus 5 ~~~dvvIIGgG~aGl~aA~~l~~~g~~V~liE~---------~~~~GG~~~~~g~~Psk~l~~~~~~~~~~~~~~~~~~g 75 (474)
T 1zmd_A 5 IDADVTVIGSGPGGYVAAIKAAQLGFKTVCIEK---------NETLGGTCLNVGCIPSKALLNNSHYYHMAHGTDFASRG 75 (474)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHHTTCCEEEEEC---------SSSSSHHHHHHSHHHHHHHHHHHHHHHHHHSSHHHHTT
T ss_pred CCCCEEEECCCHHHHHHHHHHHhCCCeEEEEeC---------CCCcCCcccccCccchHHHHHHHHHHHHhhhhhHhhCc
Confidence 358999999999999999999999999999992 347999999999999999988877766665 566677
Q ss_pred cccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEeEEEEecCCEEEE---c-C-EEEEeCeEEEcCCCCCCC
Q 008860 149 WKYGTEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIEGRGKIVDPHTVDV---D-G-KLYSARHILISVGGRPFI 223 (551)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~i~~~~v~v---~-g-~~~~~d~lviAtG~~p~~ 223 (551)
+... ...++|..+..+..+..+.+...+...+++.+++++.+++.+++++.+.+ + + +.+.||+||+|||++|..
T Consensus 76 ~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~~~~~~~~v~~~~gg~~~~~~d~lViAtGs~p~~ 154 (474)
T 1zmd_A 76 IEMS-EVRLNLDKMMEQKSTAVKALTGGIAHLFKQNKVVHVNGYGKITGKNQVTATKADGGTQVIDTKNILIATGSEVTP 154 (474)
T ss_dssp EEES-CEEECHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESEEEEEETTEEEEECTTSCEEEEEEEEEEECCCEEECC
T ss_pred cccC-CCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEecCCEEEEEecCCCcEEEEeCEEEECCCCCCCC
Confidence 7532 34678999998888888888777778888899999999988888888777 3 4 679999999999999999
Q ss_pred CCCCCCC--ceecchhhhcCCCCCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCC-CCCHHHHHHHHHHHHhcC
Q 008860 224 PDIPGSE--YAIDSDAALDLPSKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLR-GFDEDIRDFVAEQMSLRG 300 (551)
Q Consensus 224 p~i~g~~--~~~~~~~~~~~~~~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~-~~~~~~~~~l~~~l~~~G 300 (551)
|+++|.+ .++++++++.+...+++++|||+|++|+|+|..|+++|.+|+++++.+.+++ .+++++.+.+.+.+++.|
T Consensus 155 p~i~g~~~~~v~t~~~~~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~G 234 (474)
T 1zmd_A 155 FPGITIDEDTIVSSTGALSLKKVPEKMVVIGAGVIGVELGSVWQRLGADVTAVEFLGHVGGVGIDMEISKNFQRILQKQG 234 (474)
T ss_dssp CTTCCCCSSSEECHHHHTTCSSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSCSSCCHHHHHHHHHHHHHTT
T ss_pred CCCCCCCcCcEEcHHHHhhccccCceEEEECCCHHHHHHHHHHHHcCCEEEEEeccCccCCcccCHHHHHHHHHHHHHCC
Confidence 9999875 3789999988888899999999999999999999999999999999999999 799999999999999999
Q ss_pred cEEEcCcccEEEEEcCCceEEEEE-----CCCeEEEeeEEEEecCcCCCCCCCCccccCeeecCCCCeEeCCCCCCCCCc
Q 008860 301 IEFHTEESPQAILKSTDGSLSVKT-----NKGTVDGFSHVMFATGRRPNTKNLGLEKVGVKMTKNGAIEVDEYSGTAVPS 375 (551)
Q Consensus 301 v~i~~~~~v~~i~~~~~~~~~V~~-----~~G~~i~~d~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~t~~~~ 375 (551)
|+++++++|++++.++++.+.+.+ .+++++++|.||+|+|++|++++++++.++++++++|+|.||+++||+.|+
T Consensus 235 v~i~~~~~v~~i~~~~~~~~~v~~~~~~~~~~~~i~~D~vv~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~t~~~~ 314 (474)
T 1zmd_A 235 FKFKLNTKVTGATKKSDGKIDVSIEAASGGKAEVITCDVLLVCIGRRPFTKNLGLEELGIELDPRGRIPVNTRFQTKIPN 314 (474)
T ss_dssp CEEECSEEEEEEEECTTSCEEEEEEETTSCCCEEEEESEEEECSCEEECCTTSSHHHHTCCCCTTSCCCCCTTCBCSSTT
T ss_pred CEEEeCceEEEEEEcCCceEEEEEEecCCCCceEEEcCEEEECcCCCcCCCcCCchhcCCccCCCCCEEECcCCccCCCC
Confidence 999999999999886654245553 466789999999999999999987678889999988999999999999999
Q ss_pred EEEeCcCCCCCCChHHHHHhHHHHHHHHcCCCCCCCCCCCccEEEecCCceEEeeCCHHHHHhcCCCeEEEEeeccCccc
Q 008860 376 IWAVGDVTDRINLTPVALMEGGALAKTLFQAEPTKPDYSAVPSAVFSQPPIGQVGLSEEQAIQEYGDIDVFTANFRPLKA 455 (551)
Q Consensus 376 vya~GD~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~~~~~~~~~~~~~vGl~~~~a~~~~~~~~~~~~~~~~~~~ 455 (551)
|||+|||++.+++++.|..||+++|.||+|.. ...+|..+|+++|++|+++++|++|++|++.+.++.+...++....+
T Consensus 315 IyA~GD~~~~~~~~~~A~~~g~~aa~~i~~~~-~~~~~~~~p~~~~~~~~~a~vG~~e~~a~~~g~~~~~~~~~~~~~~~ 393 (474)
T 1zmd_A 315 IYAIGDVVAGPMLAHKAEDEGIICVEGMAGGA-VHIDYNCVPSVIYTHPEVAWVGKSEEQLKEEGIEYKVGKFPFAANSR 393 (474)
T ss_dssp EEECGGGSSSCCCHHHHHHHHHHHHHHHTTCC-CCCCGGGCCEEECSSSEEEEEECCHHHHHHHTCCEEEEEEEGGGCHH
T ss_pred EEEeeecCCCCccHHHHHHHHHHHHHHhcCCC-CcCCCCCCCEEEECCCCeEEEeCCHHHHHhcCCCEEEEEEecccchh
Confidence 99999999999999999999999999999864 34578889999999999999999999999888889998888888888
Q ss_pred ccccCCCcEEEEEEEECCCCeEEEEEEECCChhHHHHHHHHHHHCCCCHHHHccCcccCCCchHHHHHHHh
Q 008860 456 TLSGLPDRIFMKLVLCAKTNKVLGLHMCGEDAPEIVQGFAVAVKAGLTKADFDATVGVHPTAAEEFVTLRT 526 (551)
Q Consensus 456 ~~~~~~~~~~~kl~~~~~~~~ilG~~~~g~~~~e~i~~~~~~i~~~~~~~~l~~~~~~~pt~~e~~~~~~~ 526 (551)
+...+.+.+|+|+++|+++|+|+|+|++|+.+.|+|+.++++|++++|++||.+++++|||++|.+.++..
T Consensus 394 ~~~~~~~~~~~k~~~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~~~~~~l~~~~~~~Pt~~e~~~~~~~ 464 (474)
T 1zmd_A 394 AKTNADTDGMVKILGQKSTDRVLGAHILGPGAGEMVNEAALALEYGASCEDIARVCHAHPTLSEAFREANL 464 (474)
T ss_dssp HHHTTCCCCEEEEEEETTTCBEEEEEEEETTHHHHHHHHHHHHHHTCBHHHHHHSCCCTTCTHHHHHHHHH
T ss_pred hhhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhCcCCCCCHHHHHHHHHH
Confidence 77667778999999999899999999999999999999999999999999999999999999999887654
|
| >2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-69 Score=571.93 Aligned_cols=442 Identities=28% Similarity=0.396 Sum_probs=393.5
Q ss_pred CccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhh-hccCCCcc
Q 008860 72 DFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFD-ESNGFGWK 150 (551)
Q Consensus 72 ~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~-~~~~~g~~ 150 (551)
++||+|||||+||+++|..|++.|++|+||| +..+||+|.+.||+|++.++......+.+. ....+++.
T Consensus 3 ~~dvvIIGaG~aGl~aA~~l~~~G~~V~liE----------~~~~gG~~~~~g~~psk~ll~~~~~~~~~~~~~~~~g~~ 72 (464)
T 2a8x_A 3 HYDVVVLGAGPGGYVAAIRAAQLGLSTAIVE----------PKYWGGVCLNVGCIPSKALLRNAELVHIFTKDAKAFGIS 72 (464)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEEC----------SSCTTHHHHHHSHHHHHHHHHHHHHHHHHHHHTTTTTEE
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCeEEEEe----------CCCCCCcccccCchhhHHHHHHHHHHHHHHHHHHhcCCC
Confidence 5899999999999999999999999999999 447899999999999999988777666655 55566766
Q ss_pred cCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEeEEEEecCCEEEE---cC--EEEEeCeEEEcCCCCCCCCC
Q 008860 151 YGTEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIEGRGKIVDPHTVDV---DG--KLYSARHILISVGGRPFIPD 225 (551)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~i~~~~v~v---~g--~~~~~d~lviAtG~~p~~p~ 225 (551)
....++|..+..+.......+...+...+.+.+++++.+++..++++.+.+ ++ +.+.||+||+|||++|..|+
T Consensus 73 --~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~~~~g~~~~id~~~v~V~~~~G~~~~~~~d~lViAtG~~~~~~~ 150 (464)
T 2a8x_A 73 --GEVTFDYGIAYDRSRKVAEGRVAGVHFLMKKNKITEIHGYGTFADANTLLVDLNDGGTESVTFDNAIIATGSSTRLVP 150 (464)
T ss_dssp --ECCEECHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECEEEEESSSSEEEEEETTSCCEEEEEEEEEECCCEEECCCT
T ss_pred --CCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEecCCeEEEEeCCCceEEEEcCEEEECCCCCCCCCC
Confidence 335678888887777777777777777788889999999888888877776 46 78999999999999999998
Q ss_pred CCCCCc-eecchhhhcCCCCCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCCCCCHHHHHHHHHHHHhcCcEEE
Q 008860 226 IPGSEY-AIDSDAALDLPSKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRDFVAEQMSLRGIEFH 304 (551)
Q Consensus 226 i~g~~~-~~~~~~~~~~~~~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~ 304 (551)
++|.+. ++++++.+.+...+++++|||+|++|+|+|..|+++|.+|+++++.+++++.+++++.+.+.+.+++.||+++
T Consensus 151 ~~g~~~~~~~~~~~~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~gv~i~ 230 (464)
T 2a8x_A 151 GTSLSANVVTYEEQILSRELPKSIIIAGAGAIGMEFGYVLKNYGVDVTIVEFLPRALPNEDADVSKEIEKQFKKLGVTIL 230 (464)
T ss_dssp TCCCBTTEECHHHHHTCSSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHHTCEEE
T ss_pred CCCCCceEEecHHHhhccccCCeEEEECCcHHHHHHHHHHHHcCCeEEEEEcCCccccccCHHHHHHHHHHHHHcCCEEE
Confidence 888653 7888898888888999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcccEEEEEcCCceEEEEEC-CC--eEEEeeEEEEecCcCCCCCCCCccccCeeecCCCCeEeCCCCCCCCCcEEEeCc
Q 008860 305 TEESPQAILKSTDGSLSVKTN-KG--TVDGFSHVMFATGRRPNTKNLGLEKVGVKMTKNGAIEVDEYSGTAVPSIWAVGD 381 (551)
Q Consensus 305 ~~~~v~~i~~~~~~~~~V~~~-~G--~~i~~d~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~t~~~~vya~GD 381 (551)
++++|++++.++++ +.+.+. +| +++++|.||+|+|++|++++++++.++++++++|+|.||+++||+.|+|||+||
T Consensus 231 ~~~~v~~i~~~~~~-~~v~~~~~g~~~~~~~D~vv~a~G~~p~~~~l~~~~~gl~~~~~G~i~vd~~~~t~~~~IyA~GD 309 (464)
T 2a8x_A 231 TATKVESIADGGSQ-VTVTVTKDGVAQELKAEKVLQAIGFAPNVEGYGLDKAGVALTDRKAIGVDDYMRTNVGHIYAIGD 309 (464)
T ss_dssp CSCEEEEEEECSSC-EEEEEESSSCEEEEEESEEEECSCEEECCSSSCHHHHTCCBCTTSSBCCCTTSBCSSTTEEECGG
T ss_pred eCcEEEEEEEcCCe-EEEEEEcCCceEEEEcCEEEECCCCCccCCCCCchhcCCccCCCCCEeECcCCccCCCCEEEeEC
Confidence 99999999887655 666664 66 679999999999999999987778889999988999999999999999999999
Q ss_pred CCCCCCChHHHHHhHHHHHHHHcCCCCCC-CCCCCccEEEecCCceEEeeCCHHHHHhcCCCeEEEEeeccCcccccccC
Q 008860 382 VTDRINLTPVALMEGGALAKTLFQAEPTK-PDYSAVPSAVFSQPPIGQVGLSEEQAIQEYGDIDVFTANFRPLKATLSGL 460 (551)
Q Consensus 382 ~~~~~~~~~~A~~~g~~aa~~i~g~~~~~-~~~~~~~~~~~~~~~~~~vGl~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 460 (551)
|++.+++++.|..||+++|.||+|..... .+|..+|+++|++|+++++|++|++|++.+.++.+...++....++...+
T Consensus 310 ~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~~p~~~~~~~~~a~vG~~e~~a~~~g~~~~~~~~~~~~~~~~~~~~ 389 (464)
T 2a8x_A 310 VNGLLQLAHVAEAQGVVAAETIAGAETLTLGDHRMLPRATFCQPNVASFGLTEQQARNEGYDVVVAKFPFTANAKAHGVG 389 (464)
T ss_dssp GGCSSCSHHHHHHHHHHHHHHHHTCCCCCCCCGGGSCEEECSSSEEEEEECCHHHHHHTTCCEEEEEEEGGGCHHHHHHT
T ss_pred cCCCccCHHHHHHHHHHHHHHhcCCCCcccCCCCCCCEEEECCCCeEEEcCCHHHHHhcCCCEEEEEEEcchhhhhhhcC
Confidence 99998999999999999999999833333 56788999999999999999999999998888998888888888876667
Q ss_pred CCcEEEEEEEECCCCeEEEEEEECCChhHHHHHHHHHHHCCCCHHHHccCcccCCCchHHHHHHHh
Q 008860 461 PDRIFMKLVLCAKTNKVLGLHMCGEDAPEIVQGFAVAVKAGLTKADFDATVGVHPTAAEEFVTLRT 526 (551)
Q Consensus 461 ~~~~~~kl~~~~~~~~ilG~~~~g~~~~e~i~~~~~~i~~~~~~~~l~~~~~~~pt~~e~~~~~~~ 526 (551)
.+.+|+|+++|+++|+|+|+|++|+++.|+|+.++++|++++|++||.+++++|||++|.+.++..
T Consensus 390 ~~~~~~k~~~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~~~~~l~~~~~~~Pt~~e~~~~~~~ 455 (464)
T 2a8x_A 390 DPSGFVKLVADAKHGELLGGHLVGHDVAELLPELTLAQRWDLTASELARNVHTHPTMSEALQECFH 455 (464)
T ss_dssp CCCCEEEEEEETTTTEEEEEEEEETTGGGGHHHHHHHHHTTCBHHHHTTSCCCTTCTTHHHHHHHH
T ss_pred CCcEEEEEEEECCCCEEEEEEEECcCHHHHHHHHHHHHHCCCCHHHHhhCccCCCChHHHHHHHHH
Confidence 788999999999999999999999999999999999999999999999999999999999887543
|
| >1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-68 Score=567.31 Aligned_cols=444 Identities=27% Similarity=0.428 Sum_probs=393.9
Q ss_pred CCccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhh-ccCCCc
Q 008860 71 YDFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDE-SNGFGW 149 (551)
Q Consensus 71 ~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~-~~~~g~ 149 (551)
.+|||+|||||++|+++|..|++.|++|+|||+ ...+||+|.+.||+|++.++......+.+.. +..+|+
T Consensus 5 ~~~dvvIIGaG~aGl~aA~~l~~~g~~V~liE~---------~~~~GG~~~~~g~~p~k~l~~~~~~~~~~~~~~~~~g~ 75 (470)
T 1dxl_A 5 DENDVVIIGGGPGGYVAAIKAAQLGFKTTCIEK---------RGALGGTCLNVGCIPSKALLHSSHMYHEAKHSFANHGV 75 (470)
T ss_dssp CCCCEEEECCSHHHHHHHHHHHHHTCCEEEEEC---------SSSSCCSHHHHSHHHHHHHHHHHHHHHHHHHTHHHHTE
T ss_pred ccCCEEEECCCHHHHHHHHHHHHCCCeEEEEeC---------CCCccccccCcCccchHHHHHHHHHHHHHHHHHHhcCc
Confidence 468999999999999999999999999999993 3478999999999999998887766665554 555565
Q ss_pred ccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEeEEEEecCCEEEE---cC--EEEEeCeEEEcCCCCCCCC
Q 008860 150 KYGTEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIEGRGKIVDPHTVDV---DG--KLYSARHILISVGGRPFIP 224 (551)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~i~~~~v~v---~g--~~~~~d~lviAtG~~p~~p 224 (551)
... ...++|..+..+.....+.+...+...+.+.+++++.+++..+++..+.+ ++ ..+.||++|+|||++|..|
T Consensus 76 ~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~~~~~~~~v~~~~G~~~~i~~d~lIiAtGs~p~~p 154 (470)
T 1dxl_A 76 KVS-NVEIDLAAMMGQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFVSPSEISVDTIEGENTVVKGKHIIIATGSDVKSL 154 (470)
T ss_dssp EES-CEEECHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEESCEEEEETTEEEECCSSSCCEEEECSEEEECCCEEECCB
T ss_pred ccC-CCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEecCCEEEEEeCCCceEEEEcCEEEECCCCCCCCC
Confidence 532 34568888888887777777777777778889999999888888888877 45 7899999999999999999
Q ss_pred CCCCCC--ceecchhhhcCCCCCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCCCCCHHHHHHHHHHHHhcCcE
Q 008860 225 DIPGSE--YAIDSDAALDLPSKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRDFVAEQMSLRGIE 302 (551)
Q Consensus 225 ~i~g~~--~~~~~~~~~~~~~~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~ 302 (551)
+++|.+ .++++++++.+...+++++|||+|++|+|+|..|++.|.+|+++++.+.+++.+++++.+.+.+.+++.||+
T Consensus 155 ~~~g~~~~~v~~~~~~~~~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~l~~~l~~~gv~ 234 (470)
T 1dxl_A 155 PGVTIDEKKIVSSTGALALSEIPKKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASEIVPTMDAEIRKQFQRSLEKQGMK 234 (470)
T ss_dssp TTBCCCSSSEECHHHHTTCSSCCSEEEESCCSHHHHHHHHHHHHHTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHSSCC
T ss_pred CCCCCCcccEEeHHHhhhhhhcCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcccccccHHHHHHHHHHHHHcCCE
Confidence 988865 488889998888889999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCcccEEEEEcCCceEEEEEC---CC--eEEEeeEEEEecCcCCCCCCCCccccCeeecCCCCeEeCCCCCCCCCcEE
Q 008860 303 FHTEESPQAILKSTDGSLSVKTN---KG--TVDGFSHVMFATGRRPNTKNLGLEKVGVKMTKNGAIEVDEYSGTAVPSIW 377 (551)
Q Consensus 303 i~~~~~v~~i~~~~~~~~~V~~~---~G--~~i~~d~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~t~~~~vy 377 (551)
++++++|++++.++++ +.+.+. +| +++++|.||+|+|++|++++++++.++++++++|+|.||+++||+.|+||
T Consensus 235 i~~~~~v~~i~~~~~~-~~v~~~~~~~g~~~~~~~D~vv~a~G~~p~~~~l~~~~~gl~~~~~G~i~vd~~~~t~~~~Iy 313 (470)
T 1dxl_A 235 FKLKTKVVGVDTSGDG-VKLTVEPSAGGEQTIIEADVVLVSAGRTPFTSGLNLDKIGVETDKLGRILVNERFSTNVSGVY 313 (470)
T ss_dssp EECSEEEEEEECSSSS-EEEEEEESSSCCCEEEEESEEECCCCEEECCTTSCCTTTTCCBCSSSCBCCCTTCBCSSTTEE
T ss_pred EEeCCEEEEEEEcCCe-EEEEEEecCCCcceEEECCEEEECCCCCcCCCCCCchhcCCccCCCCCEeECcCCccCCCCEE
Confidence 9999999999876655 556654 44 67999999999999999998777888999998899999999999999999
Q ss_pred EeCcCCCCCCChHHHHHhHHHHHHHHcCCCCCCCCCCCccEEEecCCceEEeeCCHHHHHhcCCCeEEEEeeccCccccc
Q 008860 378 AVGDVTDRINLTPVALMEGGALAKTLFQAEPTKPDYSAVPSAVFSQPPIGQVGLSEEQAIQEYGDIDVFTANFRPLKATL 457 (551)
Q Consensus 378 a~GD~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~~~~~~~~~~~~~vGl~~~~a~~~~~~~~~~~~~~~~~~~~~ 457 (551)
|+|||++.+++++.|..||+++|.||+|.. ...+|..+|+++|++|+++++|++|++|++.+.++.+...++....++.
T Consensus 314 a~GD~~~~~~~~~~A~~~g~~aa~~i~g~~-~~~~~~~~p~~~~~~~~~a~vG~~e~~a~~~g~~~~~~~~~~~~~~~~~ 392 (470)
T 1dxl_A 314 AIGDVIPGPMLAHKAEEDGVACVEYLAGKV-GHVDYDKVPGVVYTNPEVASVGKTEEQVKETGVEYRVGKFPFMANSRAK 392 (470)
T ss_dssp ECSTTSSSCCCHHHHHHHHHHHHHHHTTSC-CCCCTTSCCEEECSSSEEEEEECCHHHHHHTTCCEEEEEEEGGGCHHHH
T ss_pred EEeccCCCCccHHHHHHHHHHHHHHHcCCC-cCCCCCCCCEEEECCCceEEEcCCHHHHHhcCCcEEEEEEecccchHHH
Confidence 999999988999999999999999999854 3456788999999999999999999999998888998888888877776
Q ss_pred ccCCCcEEEEEEEECCCCeEEEEEEECCChhHHHHHHHHHHHCCCCHHHHccCcccCCCchHHHHHHHh
Q 008860 458 SGLPDRIFMKLVLCAKTNKVLGLHMCGEDAPEIVQGFAVAVKAGLTKADFDATVGVHPTAAEEFVTLRT 526 (551)
Q Consensus 458 ~~~~~~~~~kl~~~~~~~~ilG~~~~g~~~~e~i~~~~~~i~~~~~~~~l~~~~~~~pt~~e~~~~~~~ 526 (551)
..+.+.+|+|+++|+++|+|+|+|++|+.+.|+|+.++++|++++|++||.+++++|||++|.+.++..
T Consensus 393 ~~~~~~~~~k~~~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~~~~~~l~~~~~~~Pt~~e~~~~~~~ 461 (470)
T 1dxl_A 393 AIDNAEGLVKIIAEKETDKILGVHIMAPNAGELIHEAAIALQYDASSEDIARVCHAHPTMSEAIKEAAM 461 (470)
T ss_dssp HHSCCCCEEEEEEETTTCBEEEEEEEETTHHHHHHHHHHHHHTTCBHHHHHTSCCCSSCTTHHHHHHHH
T ss_pred hcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhcccCCCChHHHHHHHHH
Confidence 667778999999999999999999999999999999999999999999999999999999999877543
|
| >1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.8e-68 Score=560.94 Aligned_cols=443 Identities=29% Similarity=0.444 Sum_probs=391.0
Q ss_pred CCCCccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhhccCC-
Q 008860 69 SHYDFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDESNGF- 147 (551)
Q Consensus 69 ~~~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~- 147 (551)
|+.++||+|||||++|+++|.+|++.|++|+||| +..+||+|.|.||+|++.++..+.........+.+
T Consensus 1 M~~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lie----------~~~~GG~~~~~g~ip~k~l~~~~~~~~~~~~~~~~~ 70 (467)
T 1zk7_A 1 MEPPVQVAVIGSGGAAMAAALKAVEQGAQVTLIE----------RGTIGGTCVNVGCVPSKIMIRAAHIAHLRRESPFDG 70 (467)
T ss_dssp CCCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEE----------SSSTTHHHHHHSHHHHHHHHHHHHHHHHHHCCTTTT
T ss_pred CCCcCCEEEECCCHHHHHHHHHHHHCCCEEEEEe----------CCCCCccccCCCccchHHHHHHHHHHHHHhhhhhcC
Confidence 4456999999999999999999999999999999 55789999999999999998887766666656655
Q ss_pred CcccCCCCCCChHHHHHHHHHHHHHHHH-HHHHHHHhC-CeEEEEeEEEEecCCEEEE---cC--EEEEeCeEEEcCCCC
Q 008860 148 GWKYGTEPQHDWSTLIANKNAELQRLTG-IYKNILINA-GITLIEGRGKIVDPHTVDV---DG--KLYSARHILISVGGR 220 (551)
Q Consensus 148 g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~v~~~~~~~~~i~~~~v~v---~g--~~~~~d~lviAtG~~ 220 (551)
|+.. .....++..+..+..+....+.. .+...+++. +++++.+++.+++++.+.+ ++ +.+.||++|+|||++
T Consensus 71 g~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~v~~~~g~~~~~~~d~lviAtGs~ 149 (467)
T 1zk7_A 71 GIAA-TVPTIDRSKLLAQQQARVDELRHAKYEGILGGNPAITVVHGEARFKDDQSLTVRLNEGGERVVMFDRCLVATGAS 149 (467)
T ss_dssp TSCC-CCCCCCHHHHHHHHHHHHHHHHHHHTHHHHTTCTTEEEEEEEEEEEETTEEEEEETTSSEEEEECSEEEECCCEE
T ss_pred CccC-CCCccCHHHHHHHHHHHHHHHhhhhHHHHHhccCCeEEEEEEEEEccCCEEEEEeCCCceEEEEeCEEEEeCCCC
Confidence 5432 24567888888777666665543 344566777 9999999999999888777 56 789999999999999
Q ss_pred CCCCCCCCCCc--eecchhhhcCCCCCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCCCCCHHHHHHHHHHHHh
Q 008860 221 PFIPDIPGSEY--AIDSDAALDLPSKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRDFVAEQMSL 298 (551)
Q Consensus 221 p~~p~i~g~~~--~~~~~~~~~~~~~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~ 298 (551)
|+.|++||.+. +++.++++++...+++++|||+|++|+|+|..|.++|.+|+++++.+.+++ +++++.+.+.+.+++
T Consensus 150 p~~p~i~G~~~~~~~~~~~~~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~-~~~~~~~~l~~~l~~ 228 (467)
T 1zk7_A 150 PAVPPIPGLKESPYWTSTEALASDTIPERLAVIGSSVVALELAQAFARLGSKVTVLARNTLFFR-EDPAIGEAVTAAFRA 228 (467)
T ss_dssp ECCCCCTTTTTSCCBCHHHHHHCSSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTTT-SCHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCcCceecHHHHhcccccCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEECCccCC-CCHHHHHHHHHHHHh
Confidence 99999999753 678888988888899999999999999999999999999999999999999 999999999999999
Q ss_pred cCcEEEcCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCcCCCCCCCCccccCeeecCCCCeEeCCCCCCCCCcEEE
Q 008860 299 RGIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNTKNLGLEKVGVKMTKNGAIEVDEYSGTAVPSIWA 378 (551)
Q Consensus 299 ~Gv~i~~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~t~~~~vya 378 (551)
.||+++++++|++++.+++. +.|.+. +.++++|.||+|+|++|+++++.++..+++++++|+|.||+++||+.|+|||
T Consensus 229 ~Gv~i~~~~~v~~i~~~~~~-~~v~~~-~~~i~aD~Vv~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~t~~~~iya 306 (467)
T 1zk7_A 229 EGIEVLEHTQASQVAHMDGE-FVLTTT-HGELRADKLLVATGRTPNTRSLALDAAGVTVNAQGAIVIDQGMRTSNPNIYA 306 (467)
T ss_dssp TTCEEETTCCEEEEEEETTE-EEEEET-TEEEEESEEEECSCEEESCTTSCGGGGTCCBCTTSCBCCCTTCBCSSTTEEE
T ss_pred CCCEEEcCCEEEEEEEeCCE-EEEEEC-CcEEEcCEEEECCCCCcCCCcCCchhcCCcCCCCCCEEECCCcccCCCCEEE
Confidence 99999999999999876544 567776 4579999999999999999876678889999988999999999999999999
Q ss_pred eCcCCCCCCChHHHHHhHHHHHHHHcCCCCCCCCCCCccEEEecCCceEEeeCCHHHHHhcCCCeEEEEeeccCcccccc
Q 008860 379 VGDVTDRINLTPVALMEGGALAKTLFQAEPTKPDYSAVPSAVFSQPPIGQVGLSEEQAIQEYGDIDVFTANFRPLKATLS 458 (551)
Q Consensus 379 ~GD~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~~~~~~~~~~~~~vGl~~~~a~~~~~~~~~~~~~~~~~~~~~~ 458 (551)
+|||+..+.+++.|..||+++|.||++.+ ...++..+|+++|++|+++++|+++++|+..+.++.+...++....+++.
T Consensus 307 ~GD~~~~~~~~~~A~~~g~~aa~~i~~~~-~~~~~~~~p~~~~~~~~~a~vG~~~~~a~~~g~~~~~~~~~~~~~~~~~~ 385 (467)
T 1zk7_A 307 AGDCTDQPQFVYVAAAAGTRAAINMTGGD-AALDLTAMPAVVFTDPQVATVGYSEAEAHHDGIETDSRTLTLDNVPRALA 385 (467)
T ss_dssp CSTTBSSCCCHHHHHHHHHHHHHHHTTCC-CCCCCTTCEEEECSSSEEEEEECCHHHHHHTTCCEEEEEEEGGGCHHHHH
T ss_pred EeccCCCcccHHHHHHHHHHHHHHHcCCC-cccCCCCCCEEEecCCceEEEecCHHHHHhcCCCeEEEEEecccchhhhh
Confidence 99999999999999999999999999863 34667889999999999999999999999888788888888877777766
Q ss_pred cCCCcEEEEEEEECCCCeEEEEEEECCChhHHHHHHHHHHHCCCCHHHHccCcccCCCchHHHHHHHh
Q 008860 459 GLPDRIFMKLVLCAKTNKVLGLHMCGEDAPEIVQGFAVAVKAGLTKADFDATVGVHPTAAEEFVTLRT 526 (551)
Q Consensus 459 ~~~~~~~~kl~~~~~~~~ilG~~~~g~~~~e~i~~~~~~i~~~~~~~~l~~~~~~~pt~~e~~~~~~~ 526 (551)
...+.+|+|+++|+++|+|+|+|++|+++.|+|+.++++|++++|++||.+++++|||++|++.++..
T Consensus 386 ~~~~~~~~kl~~~~~~~~ilG~~~~g~~a~~~i~~~~~~i~~~~~~~~l~~~~~~~pt~~e~~~~~~~ 453 (467)
T 1zk7_A 386 NFDTRGFIKLVIEEGSHRLIGVQAVAPEAGELIQTAALAIRNRMTVQELADQLFPYLTMVEGLKLAAQ 453 (467)
T ss_dssp TTCCCCEEEEEEETTTCBEEEEEEEETTHHHHHHHHHHHHHTTCBHHHHHTSCCCTTSTTHHHHHHHH
T ss_pred cCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcCccCCCCHHHHHHHHHH
Confidence 67778999999999999999999999999999999999999999999999999999999999887654
|
| >1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-68 Score=560.50 Aligned_cols=438 Identities=28% Similarity=0.435 Sum_probs=393.1
Q ss_pred CccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhhccC---CC
Q 008860 72 DFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDESNG---FG 148 (551)
Q Consensus 72 ~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~---~g 148 (551)
+|||+|||||+||++||.+|++.|++|+||| ++.+||+|.+.||+|+|.++..++..+.+..+.. +|
T Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie----------~~~~GG~~~~~g~~Psk~l~~~~~~~~~~~~~~~~~~~g 74 (458)
T 1lvl_A 5 QTTLLIIGGGPGGYVAAIRAGQLGIPTVLVE----------GQALGGTCLNIGCIPSKALIHVAEQFHQASRFTEPSPLG 74 (458)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHHTCCEEEEC----------SSCTTHHHHHHSHHHHHHHHHHHHHHHHHHHTTSCCTTC
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCEEEEEc----------cCCCCCcCCCcCcHhHHHHHHHHHHHHHHhhcccccccC
Confidence 5899999999999999999999999999999 5779999999999999999988887777776666 77
Q ss_pred cccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEeEEEEecCCEEEEcCEEEEeCeEEEcCCCCCCCCC-CC
Q 008860 149 WKYGTEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIEGRGKIVDPHTVDVDGKLYSARHILISVGGRPFIPD-IP 227 (551)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~i~~~~v~v~g~~~~~d~lviAtG~~p~~p~-i~ 227 (551)
+... ...++|..+..+..+..+++.......+++.+++++.+++.+++++++.++++.+.||+||||||++|+.|+ ++
T Consensus 75 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~~~~v~v~~~~~~~d~lviATGs~p~~~~~~~ 153 (458)
T 1lvl_A 75 ISVA-SPRLDIGQSVAWKDGIVDRLTTGVAALLKKHGVKVVHGWAKVLDGKQVEVDGQRIQCEHLLLATGSSSVELPMLP 153 (458)
T ss_dssp CCCC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECSCEEEEETTEEEETTEEEECSEEEECCCEEECCBTTBC
T ss_pred cccC-CCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEEEEEEccCCEEEEeeEEEEeCEEEEeCCCCCCCCCCCC
Confidence 7653 467899999999988888888888888889999999999888999999986688999999999999998776 66
Q ss_pred CCCceecchhhhcCCCCCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCCCCCHHHHHHHHHHHHhcCcEEEcCc
Q 008860 228 GSEYAIDSDAALDLPSKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRDFVAEQMSLRGIEFHTEE 307 (551)
Q Consensus 228 g~~~~~~~~~~~~~~~~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~~~~ 307 (551)
....++++++.+.+...+++++|||+|++|+|+|..|++.|.+|+++++.+.+++.+++++.+.+.+.+++.||++++++
T Consensus 154 ~~~~v~~~~~~~~~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~gv~i~~~~ 233 (458)
T 1lvl_A 154 LGGPVISSTEALAPKALPQHLVVVGGGYIGLELGIAYRKLGAQVSVVEARERILPTYDSELTAPVAESLKKLGIALHLGH 233 (458)
T ss_dssp CBTTEECHHHHTCCSSCCSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHHTCEEETTC
T ss_pred ccCcEecHHHHhhhhccCCeEEEECcCHHHHHHHHHHHHCCCeEEEEEcCCccccccCHHHHHHHHHHHHHCCCEEEECC
Confidence 33357888999888888999999999999999999999999999999999999998999999999999999999999999
Q ss_pred ccEEEEEcCCceEEEEECCC--eEEEeeEEEEecCcCCCCCCCCccccCeeecCCCCeEeCCCCCCCCCcEEEeCcCCCC
Q 008860 308 SPQAILKSTDGSLSVKTNKG--TVDGFSHVMFATGRRPNTKNLGLEKVGVKMTKNGAIEVDEYSGTAVPSIWAVGDVTDR 385 (551)
Q Consensus 308 ~v~~i~~~~~~~~~V~~~~G--~~i~~d~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~t~~~~vya~GD~~~~ 385 (551)
+|++++. ++ +.+...+| +++++|.||+|+|++|++++++++..|++++++ +|.||+++||+.|+|||+|||++.
T Consensus 234 ~v~~i~~--~~-v~v~~~~G~~~~i~~D~vv~a~G~~p~~~~l~~~~~g~~~~~~-~i~vd~~~~t~~~~Iya~GD~~~~ 309 (458)
T 1lvl_A 234 SVEGYEN--GC-LLANDGKGGQLRLEADRVLVAVGRRPRTKGFNLECLDLKMNGA-AIAIDERCQTSMHNVWAIGDVAGE 309 (458)
T ss_dssp EEEEEET--TE-EEEECSSSCCCEECCSCEEECCCEEECCSSSSGGGSCCCEETT-EECCCTTCBCSSTTEEECGGGGCS
T ss_pred EEEEEEe--CC-EEEEECCCceEEEECCEEEECcCCCcCCCCCCcHhcCCcccCC-EEeECCCCcCCCCCEEEeeccCCC
Confidence 9999976 33 55554456 579999999999999999876678889999887 899999999999999999999999
Q ss_pred CCChHHHHHhHHHHHHHHcCCCCCCCCCCCccEEEecCCceEEeeCCHHHHHhcCCCeEEEEeeccCcccccccCCCcEE
Q 008860 386 INLTPVALMEGGALAKTLFQAEPTKPDYSAVPSAVFSQPPIGQVGLSEEQAIQEYGDIDVFTANFRPLKATLSGLPDRIF 465 (551)
Q Consensus 386 ~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~~~~~~~~~~~~~vGl~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (551)
+++++.|..||+++|.||+|.. ...++..+|+++|++|+++++|++|++|++.+.++.+...++....++...+.+.+|
T Consensus 310 ~~~~~~A~~~g~~aa~~i~g~~-~~~~~~~~p~~~~~~p~~a~vG~~e~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~ 388 (458)
T 1lvl_A 310 PMLAHRAMAQGEMVAEIIAGKA-RRFEPAAIAAVCFTDPEVVVVGKTPEQASQQGLDCIVAQFPFAANGRAMSLESKSGF 388 (458)
T ss_dssp SCCHHHHHHHHHHHHHHHTTCC-CCCCCSCCCEEECSSSEEEEEECCHHHHHHTTCCEEEEEEEGGGCHHHHHTTCCCCE
T ss_pred cccHHHHHHHHHHHHHHhcCCC-ccCCCCCCCEEEECCCCeEEEeCCHHHHHHcCCCEEEEEEECccchhhhhcCCCcEE
Confidence 9999999999999999999854 345677899999999999999999999999887888888777777776656677899
Q ss_pred EEEEEECCCCeEEEEEEECCChhHHHHHHHHHHHCCCCHHHHccCcccCCCchHHHHHHH
Q 008860 466 MKLVLCAKTNKVLGLHMCGEDAPEIVQGFAVAVKAGLTKADFDATVGVHPTAAEEFVTLR 525 (551)
Q Consensus 466 ~kl~~~~~~~~ilG~~~~g~~~~e~i~~~~~~i~~~~~~~~l~~~~~~~pt~~e~~~~~~ 525 (551)
+|+++|+++++|+|++++|+.+.|+|+.++++|++|+|++||.+++++|||++|.+.++.
T Consensus 389 ~kl~~d~~~~~ilG~~~vg~~a~e~i~~~~~ai~~~~~~~~l~~~~~~~Pt~~e~~~~a~ 448 (458)
T 1lvl_A 389 VRVVARRDNHLILGWQAVGVAVSELSTAFAQSLEMGACLEDVAGTIHAHPTLGEAVQEAA 448 (458)
T ss_dssp EEEEEETTTCBEEEEEEEETTGGGHHHHHHHHHHHTCBHHHHHTSCCCTTCTTHHHHHHH
T ss_pred EEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhCcCCCCCHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999987654
|
| >1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-68 Score=572.81 Aligned_cols=443 Identities=23% Similarity=0.357 Sum_probs=383.8
Q ss_pred CCCCccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhhccCCC
Q 008860 69 SHYDFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDESNGFG 148 (551)
Q Consensus 69 ~~~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g 148 (551)
+..++||+|||||++|+++|.+|++.|++|+|||+ ...+||+|.+.||+|++.++..+.....+.+...|+
T Consensus 40 ~~~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~---------~~~~GG~~~~~g~~p~k~l~~~~~~~~~~~~~~~~g 110 (523)
T 1mo9_A 40 DPREYDAIFIGGGAAGRFGSAYLRAMGGRQLIVDR---------WPFLGGSCPHNACVPHHLFSDCAAELMLARTFSGQY 110 (523)
T ss_dssp CCSCBSEEEECCSHHHHHHHHHHHHTTCCEEEEES---------SSSSSCHHHHHSHHHHHHHHHHHHHHHHHHHTTTST
T ss_pred CCCcCCEEEECCCHHHHHHHHHHHHCCCCEEEEeC---------CCCCCCcccccCcCchHHHHHHHHHHHHHhhhhhcC
Confidence 44569999999999999999999999999999992 333899999999999999988887777777777776
Q ss_pred cccCCCC--CCChHHHHHHHHHHHHHHHHHHH---HHH-----HhCCeEEE-EeEEEEecCCEEEEcCEEEEeCeEEEcC
Q 008860 149 WKYGTEP--QHDWSTLIANKNAELQRLTGIYK---NIL-----INAGITLI-EGRGKIVDPHTVDVDGKLYSARHILISV 217 (551)
Q Consensus 149 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~---~~~-----~~~~v~~~-~~~~~~i~~~~v~v~g~~~~~d~lviAt 217 (551)
+ +.... .+.... ....+...+. ..+ .+.+++++ .+++.+++++++.++++.+.||++|+||
T Consensus 111 ~-~~~~~~~~~~~~~-------~~~~l~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~i~~~~v~~~g~~~~~d~lViAT 182 (523)
T 1mo9_A 111 W-FPDMTEKVVGIKE-------VVDLFRAGRNGPHGIMNFQSKEQLNLEYILNCPAKVIDNHTVEAAGKVFKAKNLILAV 182 (523)
T ss_dssp T-CCCCTTCCCCHHH-------HHHHHHHHTHHHHHHHHHHHHHTSCCCEEESSCCEEEETTEEEETTEEEEBSCEEECC
T ss_pred c-HHHHHhhhhhHHH-------HHHHHHhhhhhhhhhhhhcccccCCcEEEEeeEEEEeeCCEEEECCEEEEeCEEEECC
Confidence 5 11100 011222 2233322222 445 67799998 8888889988888888889999999999
Q ss_pred CCCCCCCCCCCCCc--eecchhhh-cCCCCC-CeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCCCCCHHHHHHHH
Q 008860 218 GGRPFIPDIPGSEY--AIDSDAAL-DLPSKP-EKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRDFVA 293 (551)
Q Consensus 218 G~~p~~p~i~g~~~--~~~~~~~~-~~~~~~-~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~ 293 (551)
|++|..|+++|.+. ++++++++ .+...+ ++++|||+|++|+|+|..|.++|.+|+++++.+.+++.+++++.+.+.
T Consensus 183 Gs~p~~p~i~G~~~~~v~~~~~~~~~l~~~~g~~vvViGgG~~g~E~A~~l~~~G~~Vtlv~~~~~~l~~~~~~~~~~l~ 262 (523)
T 1mo9_A 183 GAGPGTLDVPGVNAKGVFDHATLVEELDYEPGSTVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEPLKLIKDNETRAYVL 262 (523)
T ss_dssp CEECCCCCSTTTTSBTEEEHHHHHHHCCSCCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTTTCCSHHHHHHHH
T ss_pred CCCCCCCCCCCcccCcEeeHHHHHHHHHhcCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEecCcccccccHHHHHHHH
Confidence 99999999999764 78888888 887778 999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCcEEEcCcccEEEEEcCCce---EEEEECCCe-EEEeeEEEEecCcCCCCC-CCCccccCeeecCCCCeEeCCC
Q 008860 294 EQMSLRGIEFHTEESPQAILKSTDGS---LSVKTNKGT-VDGFSHVMFATGRRPNTK-NLGLEKVGVKMTKNGAIEVDEY 368 (551)
Q Consensus 294 ~~l~~~Gv~i~~~~~v~~i~~~~~~~---~~V~~~~G~-~i~~d~vi~a~G~~p~~~-~l~l~~~gl~~~~~G~i~vd~~ 368 (551)
+.+++.||+++++++|++++.++++. +.|++.+|+ ++++|.||+|+|++|+++ + ++.+|++++++|+|.||++
T Consensus 263 ~~l~~~GV~i~~~~~V~~i~~~~~~~v~~~~v~~~~G~~~i~aD~Vv~A~G~~p~~~~~--l~~~gl~~~~~G~i~Vd~~ 340 (523)
T 1mo9_A 263 DRMKEQGMEIISGSNVTRIEEDANGRVQAVVAMTPNGEMRIETDFVFLGLGEQPRSAEL--AKILGLDLGPKGEVLVNEY 340 (523)
T ss_dssp HHHHHTTCEEESSCEEEEEEECTTSBEEEEEEEETTEEEEEECSCEEECCCCEECCHHH--HHHHTCCBCTTSCBCCCTT
T ss_pred HHHHhCCcEEEECCEEEEEEEcCCCceEEEEEEECCCcEEEEcCEEEECcCCccCCccC--HHHcCCccCCCCCEEECCC
Confidence 99999999999999999998755542 568888887 899999999999999997 5 6788999998999999999
Q ss_pred CCCCCCcEEEeCcCCCCCCChHHHHHhHHHHHHHHcCCCCCCCCCCCccEEEecCCceEEeeCCHHHHHhcCCCeEEEEe
Q 008860 369 SGTAVPSIWAVGDVTDRINLTPVALMEGGALAKTLFQAEPTKPDYSAVPSAVFSQPPIGQVGLSEEQAIQEYGDIDVFTA 448 (551)
Q Consensus 369 ~~t~~~~vya~GD~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~~~~~~~~~~~~~vGl~~~~a~~~~~~~~~~~~ 448 (551)
+||+.|+|||+|||++.+++++.|..||+++|.||+|.+ ...++..+|+++|++|+++++|++|++|++.+.++.+...
T Consensus 341 ~~t~~~~IyA~GD~~~~~~~~~~A~~~g~~aa~~i~g~~-~~~~~~~~p~~~~~~~~~a~vG~~e~~a~~~g~~~~~~~~ 419 (523)
T 1mo9_A 341 LQTSVPNVYAVGDLIGGPMEMFKARKSGCYAARNVMGEK-ISYTPKNYPDFLHTHYEVSFLGMGEEEARAAGHEIVTIKM 419 (523)
T ss_dssp SBCSSTTEEECGGGGCSSCSHHHHHHHHHHHHHHHTTCC-CCCCCCSCCEEEESSSEEEEEECCHHHHHHTTCCEEEEEE
T ss_pred CccCCCCEEEEeecCCCcccHHHHHHHHHHHHHHHcCCC-CCCCCCCCCeEEECCCceEEEeCCHHHHHhCCCCEEEEEE
Confidence 999999999999999988999999999999999999854 3345778999999999999999999999999888888887
Q ss_pred eccC--------------ccccccc--CCCcEEEEEEEECCCCeEEEEEEECCChhHHHHHHHHHHHCCCCHHHHccC--
Q 008860 449 NFRP--------------LKATLSG--LPDRIFMKLVLCAKTNKVLGLHMCGEDAPEIVQGFAVAVKAGLTKADFDAT-- 510 (551)
Q Consensus 449 ~~~~--------------~~~~~~~--~~~~~~~kl~~~~~~~~ilG~~~~g~~~~e~i~~~~~~i~~~~~~~~l~~~-- 510 (551)
++.. +.+++.. +.+.+|+|+++|+++|+|||+|++|+.+.|+|+.+++||++++|++||.++
T Consensus 420 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~ 499 (523)
T 1mo9_A 420 PPDTENGLNVALPASDRTMLYAFGKGTAHMSGFQKIVIDAKTRKVLGAHHVGYGAKDAFQYLNVLIKQGLTVDELGDMDE 499 (523)
T ss_dssp SCCSTTTTCSSCSCCTTTHHHHHSTTTGGGGCEEEEEEETTTCBEEEEEEEESSCHHHHHHHHHHHHTTCBHHHHHTSCC
T ss_pred ecccccccccccccccccccceEEeecCCCCEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHHhCCc
Confidence 7765 5566555 567899999999999999999999999999999999999999999999999
Q ss_pred cccCCCchHHHHHHHhhhhhh
Q 008860 511 VGVHPTAAEEFVTLRTPTRKI 531 (551)
Q Consensus 511 ~~~~pt~~e~~~~~~~~~~~~ 531 (551)
+++|||++|.+.+++...|++
T Consensus 500 ~~~~Pt~~e~~~~~~~~~~~~ 520 (523)
T 1mo9_A 500 LFLNPTHFIQLSRLRAGSKNL 520 (523)
T ss_dssp CSSCSCCHHHHHHHHTTCSSC
T ss_pred ceECCCHHHHHHHHHHhhHhh
Confidence 999999999999888877765
|
| >2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-67 Score=553.16 Aligned_cols=442 Identities=29% Similarity=0.429 Sum_probs=397.1
Q ss_pred CccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhhccCCCccc
Q 008860 72 DFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDESNGFGWKY 151 (551)
Q Consensus 72 ~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~~ 151 (551)
+|||+|||||+||+++|.+|++.|++|+|||+ ...+||+|.+.||+|++.++..++..+.+.. ..+|+..
T Consensus 1 ~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~---------~~~~GG~~~~~g~~p~k~l~~~~~~~~~~~~-~~~g~~~ 70 (455)
T 2yqu_A 1 MYDLLVIGAGPGGYVAAIRAAQLGMKVGVVEK---------EKALGGTCLRVGCIPSKALLETTERIYEAKK-GLLGAKV 70 (455)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTTCCEEEEES---------SSSSSHHHHHHSHHHHHHHHHHHHHHHHHHH-CCTTEEE
T ss_pred CCCEEEECCChhHHHHHHHHHHCCCeEEEEeC---------CCCCCCccceecchhHHHHHHHHHHHHHHhh-hcCCccc
Confidence 38999999999999999999999999999992 3479999999999999999988877777666 6777764
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEeEEEEecCCEEEE--cCEEEEeCeEEEcCCCCCCCCCCCCC
Q 008860 152 GTEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIEGRGKIVDPHTVDV--DGKLYSARHILISVGGRPFIPDIPGS 229 (551)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~i~~~~v~v--~g~~~~~d~lviAtG~~p~~p~i~g~ 229 (551)
. ....+|..+..+.....+.+...+...+++.+++++.+++.+++++.+.+ +++.+.||+||+|||++|..|+++|.
T Consensus 71 ~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~g~~~~i~~~~~~v~~~g~~~~~d~lviAtG~~p~~~~~~g~ 149 (455)
T 2yqu_A 71 K-GVELDLPALMAHKDKVVQANTQGVEFLFKKNGIARHQGTARFLSERKVLVEETGEELEARYILIATGSAPLIPPWAQV 149 (455)
T ss_dssp C-CEEECHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEESCEEESSSSEEEETTTCCEEEEEEEEECCCEEECCCTTBCC
T ss_pred C-CCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEecCCeEEEeeCCEEEEecEEEECCCCCCCCCCCCCC
Confidence 3 35678999888888777777777777788889999999988888888888 36789999999999999999998886
Q ss_pred C--ceecchhhhcCCCCCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCCCCCHHHHHHHHHHHHhcCcEEEcCc
Q 008860 230 E--YAIDSDAALDLPSKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRDFVAEQMSLRGIEFHTEE 307 (551)
Q Consensus 230 ~--~~~~~~~~~~~~~~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~~~~ 307 (551)
+ .++++++++.+...+++++|||+|++|+|+|..|++.|.+|+++++.+.+++.+++++.+.+.+.+++.||++++++
T Consensus 150 ~~~~v~~~~~~~~~~~~~~~vvIiGgG~~g~e~A~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~~~~ 229 (455)
T 2yqu_A 150 DYERVVTSTEALSFPEVPKRLIVVGGGVIGLELGVVWHRLGAEVIVLEYMDRILPTMDLEVSRAAERVFKKQGLTIRTGV 229 (455)
T ss_dssp CSSSEECHHHHTCCSSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTTSCHHHHHHHHHHHHHHTCEEECSC
T ss_pred CcCcEechHHhhccccCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEecCCccccccCHHHHHHHHHHHHHCCCEEEECC
Confidence 5 47888999888888999999999999999999999999999999999999998999999999999999999999999
Q ss_pred ccEEEEEcCCceEEEEECCCeEEEeeEEEEecCcCCCCCCCCccccCeeecCCCCeEeCCCCCCCCCcEEEeCcCCCCCC
Q 008860 308 SPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNTKNLGLEKVGVKMTKNGAIEVDEYSGTAVPSIWAVGDVTDRIN 387 (551)
Q Consensus 308 ~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~t~~~~vya~GD~~~~~~ 387 (551)
+|++++.++++ +.+.+.+|+++++|.||+|+|++|++++++++..+++++++|+|.||+++||+.|+|||+|||+..++
T Consensus 230 ~V~~i~~~~~~-v~v~~~~g~~i~~D~vv~A~G~~p~~~~l~~~~~g~~~~~~g~i~vd~~~~t~~~~iya~GD~~~~~~ 308 (455)
T 2yqu_A 230 RVTAVVPEAKG-ARVELEGGEVLEADRVLVAVGRRPYTEGLSLENAGLSTDERGRIPVDEHLRTRVPHIYAIGDVVRGPM 308 (455)
T ss_dssp CEEEEEEETTE-EEEEETTSCEEEESEEEECSCEEECCTTCCGGGGTCCCCTTSCCCCCTTSBCSSTTEEECGGGSSSCC
T ss_pred EEEEEEEeCCE-EEEEECCCeEEEcCEEEECcCCCcCCCCCChhhcCCccCCCCcEeECCCcccCCCCEEEEecCCCCcc
Confidence 99999887655 77888888889999999999999999887678889999888999999999999999999999999999
Q ss_pred ChHHHHHhHHHHHHHHcCCCCCCCCCCCccEEEecCCceEEeeCCHHHHHhcCCCeEEEEeeccCcccccccCCCcEEEE
Q 008860 388 LTPVALMEGGALAKTLFQAEPTKPDYSAVPSAVFSQPPIGQVGLSEEQAIQEYGDIDVFTANFRPLKATLSGLPDRIFMK 467 (551)
Q Consensus 388 ~~~~A~~~g~~aa~~i~g~~~~~~~~~~~~~~~~~~~~~~~vGl~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k 467 (551)
+++.|..||+++|+||+|.. ...++..+|++.|++|+++++|++++++++.+.++.+....+....++...+.+.+|+|
T Consensus 309 ~~~~A~~~g~~aa~~i~~~~-~~~~~~~~p~~~~~~~~~a~~G~~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~k 387 (455)
T 2yqu_A 309 LAHKASEEGIAAVEHMVRGF-GHVDYQAIPSVVYTHPEIAAVGYTEEELKAQGIPYKVGKFPYSASGRARAMGETEGFIK 387 (455)
T ss_dssp CHHHHHHHHHHHHHHHHHSC-CCCCGGGCCEEECSSSEEEEEECCHHHHHHHTCCEEEEEEEGGGCHHHHHHTCCCCEEE
T ss_pred CHHHHHHhHHHHHHHHcCCC-ccCCCCCCCEEEEcCCceEEEECCHHHHHHcCCCEEEEEEEcccchHHHhcCCCcEEEE
Confidence 99999999999999999854 34567788999999999999999999999988888888888877777766667789999
Q ss_pred EEEECCCCeEEEEEEECCChhHHHHHHHHHHHCCCCHHHHccCcccCCCchHHHHHHHh
Q 008860 468 LVLCAKTNKVLGLHMCGEDAPEIVQGFAVAVKAGLTKADFDATVGVHPTAAEEFVTLRT 526 (551)
Q Consensus 468 l~~~~~~~~ilG~~~~g~~~~e~i~~~~~~i~~~~~~~~l~~~~~~~pt~~e~~~~~~~ 526 (551)
+++|+++|+|+|++++|+.+.|+|+.++++|++|+|++||.+++++|||++|.+.++..
T Consensus 388 ~~~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~~~~~~~~~~~~~~Pt~~e~~~~~~~ 446 (455)
T 2yqu_A 388 VLAHAKTDRILGVHGIGARVGDVLAEAALALFFKASAEDLGRAPHAHPSLSEILKEAAL 446 (455)
T ss_dssp EEEETTTCBEEEEEEEETTHHHHHHHHHHHHHTTCBHHHHHHSCCCSSCTHHHHHHHHH
T ss_pred EEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhcccCCCCHHHHHHHHHH
Confidence 99999899999999999999999999999999999999999999999999999877543
|
| >1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-67 Score=557.24 Aligned_cols=445 Identities=27% Similarity=0.426 Sum_probs=388.3
Q ss_pred CCCCccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhh-hccCC
Q 008860 69 SHYDFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFD-ESNGF 147 (551)
Q Consensus 69 ~~~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~-~~~~~ 147 (551)
|..++||+|||||++|+++|..|++.|++|+|||+ ...+||+|.+.||+|++.++......+.+. .+..+
T Consensus 2 M~~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~---------~~~~GG~~~~~g~~psk~l~~~~~~~~~~~~~~~~~ 72 (478)
T 1v59_A 2 INKSHDVVIIGGGPAGYVAAIKAAQLGFNTACVEK---------RGKLGGTCLNVGCIPSKALLNNSHLFHQMHTEAQKR 72 (478)
T ss_dssp EEEEEEEEEECCSHHHHHHHHHHHHTTCCEEEEES---------SSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHTSGGG
T ss_pred CCCcCCEEEECCCHHHHHHHHHHHHCCCeEEEEec---------CCCcCCccceeccHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34468999999999999999999999999999993 367899999999999999988777666555 45566
Q ss_pred CcccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEeEEEEecCCEEEE---cC--EE------EEeCeEEEc
Q 008860 148 GWKYGTEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIEGRGKIVDPHTVDV---DG--KL------YSARHILIS 216 (551)
Q Consensus 148 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~i~~~~v~v---~g--~~------~~~d~lviA 216 (551)
|+.......+++..+..+.....+.+...+...+++.+++++.+++.+.++..+.+ ++ +. +.||+||+|
T Consensus 73 gi~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~~~~~~v~V~~~~G~~~~~~~~~~i~~d~lViA 152 (478)
T 1v59_A 73 GIDVNGDIKINVANFQKAKDDAVKQLTGGIELLFKKNKVTYYKGNGSFEDETKIRVTPVDGLEGTVKEDHILDVKNIIVA 152 (478)
T ss_dssp TEEECSCEEECHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESEEEESSSSEEEEECCTTCTTCCSSCEEEEEEEEEEC
T ss_pred CcccCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCeEEEEecCCCcccccccceEEeCEEEEC
Confidence 66542234678888888887777777777777888899999999888888777776 34 45 999999999
Q ss_pred CCCCCCCCCCCCC----CceecchhhhcCCCCCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCCCCCHHHHHHH
Q 008860 217 VGGRPFIPDIPGS----EYAIDSDAALDLPSKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRDFV 292 (551)
Q Consensus 217 tG~~p~~p~i~g~----~~~~~~~~~~~~~~~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l 292 (551)
||++|. .+||. ..++++++++.+...+++++|||+|++|+|+|..|+++|.+|+++++.+.+++.+++++.+.+
T Consensus 153 tGs~p~--~~~g~~~~~~~v~~~~~~~~~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l 230 (478)
T 1v59_A 153 TGSEVT--PFPGIEIDEEKIVSSTGALSLKEIPKRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQIGASMDGEVAKAT 230 (478)
T ss_dssp CCEEEC--CCTTCCCCSSSEECHHHHTTCSSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSSSSCHHHHHHH
T ss_pred cCCCCC--CCCCCCCCCceEEcHHHHHhhhccCceEEEECCCHHHHHHHHHHHHcCCEEEEEEeCCccccccCHHHHHHH
Confidence 999884 23443 247888999888888999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCcEEEcCcccEEEEE--cCCceEEEEEC-----CCeEEEeeEEEEecCcCCCCCCCCccccCeeecCCCCeEe
Q 008860 293 AEQMSLRGIEFHTEESPQAILK--STDGSLSVKTN-----KGTVDGFSHVMFATGRRPNTKNLGLEKVGVKMTKNGAIEV 365 (551)
Q Consensus 293 ~~~l~~~Gv~i~~~~~v~~i~~--~~~~~~~V~~~-----~G~~i~~d~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~v 365 (551)
.+.+++.||+++++++|+++.. +++. +.+.+. +++++++|.||+|+|++|+++.+.++..|++++++|+|.|
T Consensus 231 ~~~l~~~gv~i~~~~~v~~i~~~~~~~~-~~v~~~~~~~g~~~~~~~D~vv~a~G~~p~~~~l~l~~~g~~~~~~G~i~v 309 (478)
T 1v59_A 231 QKFLKKQGLDFKLSTKVISAKRNDDKNV-VEIVVEDTKTNKQENLEAEVLLVAVGRRPYIAGLGAEKIGLEVDKRGRLVI 309 (478)
T ss_dssp HHHHHHTTCEEECSEEEEEEEEETTTTE-EEEEEEETTTTEEEEEEESEEEECSCEEECCTTSCTTTTTCCBCTTSCBCC
T ss_pred HHHHHHCCCEEEeCCEEEEEEEecCCCe-EEEEEEEcCCCCceEEECCEEEECCCCCcCCCCCCchhcCceeCCCCCEeE
Confidence 9999999999999999999987 4433 566665 4567999999999999999984447889999998999999
Q ss_pred CCCCCCCCCcEEEeCcCCCCCCChHHHHHhHHHHHHHHcCCCCCCCCCCCccEEEecCCceEEeeCCHHHHHhcCCCeEE
Q 008860 366 DEYSGTAVPSIWAVGDVTDRINLTPVALMEGGALAKTLFQAEPTKPDYSAVPSAVFSQPPIGQVGLSEEQAIQEYGDIDV 445 (551)
Q Consensus 366 d~~~~t~~~~vya~GD~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~~~~~~~~~~~~~vGl~~~~a~~~~~~~~~ 445 (551)
|+++||+.|+|||+|||++.+++++.|..||+++|+||++.+ ...+|..+|+++|++|+++++|++|++|++.+.++.+
T Consensus 310 d~~~~t~~~~IyA~GD~~~~~~~~~~A~~~g~~aa~~i~~~~-~~~~~~~~p~~~~~~~~~a~vG~~e~~a~~~g~~~~~ 388 (478)
T 1v59_A 310 DDQFNSKFPHIKVVGDVTFGPMLAHKAEEEGIAAVEMLKTGH-GHVNYNNIPSVMYSHPEVAWVGKTEEQLKEAGIDYKI 388 (478)
T ss_dssp CTTSBCSSTTEEECGGGSSSCCCHHHHHHHHHHHHHHHHHSC-CCCCTTSCCEEECSSSEEEEEECCHHHHHHTTCCEEE
T ss_pred CcCCccCCCCEEEeeccCCCcccHHHHHHHHHHHHHHHcCCC-CCCCCCCCCEEEEcCCcEEEEECCHHHHHHcCCCEEE
Confidence 999999999999999999999999999999999999999854 3457888999999999999999999999988878888
Q ss_pred EEeeccCcccccccCCCcEEEEEEEECCCCeEEEEEEECCChhHHHHHHHHHHHCCCCHHHHccCcccCCCchHHHHHHH
Q 008860 446 FTANFRPLKATLSGLPDRIFMKLVLCAKTNKVLGLHMCGEDAPEIVQGFAVAVKAGLTKADFDATVGVHPTAAEEFVTLR 525 (551)
Q Consensus 446 ~~~~~~~~~~~~~~~~~~~~~kl~~~~~~~~ilG~~~~g~~~~e~i~~~~~~i~~~~~~~~l~~~~~~~pt~~e~~~~~~ 525 (551)
...++....++...+.+.+|+|+++++++|+|+|++++|+.+.|+|+.++.+|++++|++||.+++++|||++|.+.++.
T Consensus 389 ~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~ilG~~~~g~~a~~~i~~~~~~i~~~~~~~~l~~~~~~~Pt~~e~~~~~~ 468 (478)
T 1v59_A 389 GKFPFAANSRAKTNQDTEGFVKILIDSKTERILGAHIIGPNAGEMIAEAGLALEYGASAEDVARVCHAHPTLSEAFKEAN 468 (478)
T ss_dssp EEEEGGGCHHHHHTTCCCCEEEEEEETTTCBEEEEEEEETTHHHHHHHHHHHHHTTCBHHHHHTSCCCTTCTTHHHHHHH
T ss_pred EEEecccchhhhhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhCCCCCCCHHHHHHHHH
Confidence 88888877777666667899999999889999999999999999999999999999999999999999999999987754
Q ss_pred h
Q 008860 526 T 526 (551)
Q Consensus 526 ~ 526 (551)
.
T Consensus 469 ~ 469 (478)
T 1v59_A 469 M 469 (478)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-65 Score=560.02 Aligned_cols=453 Identities=40% Similarity=0.710 Sum_probs=387.2
Q ss_pred CCccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhhccCCCcc
Q 008860 71 YDFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDESNGFGWK 150 (551)
Q Consensus 71 ~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~ 150 (551)
.+|||+|||||+||++||.+|++.|++|+|||+.... .......+||+|.+.||+|++.+...+.....+.+...||+.
T Consensus 106 ~~~dvvVIG~GpAGl~aA~~l~~~g~~v~liE~~~~~-~~g~~~~~GG~~~~~g~iP~~~l~~~~~~~~~~~~~~~~g~~ 184 (598)
T 2x8g_A 106 YDYDLIVIGGGSGGLAAGKEAAKYGAKTAVLDYVEPT-PIGTTWGLGGTCVNVGCIPKKLMHQAGLLSHALEDAEHFGWS 184 (598)
T ss_dssp SSEEEEEECCSHHHHHHHHHHHHTTCCEEEECCCCCC-TTCCCCCTTHHHHHHSHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred ccccEEEECCCccHHHHHHHHHhCCCeEEEEeccCCc-ccccccccCceEeccCCCchHHHHHHHHHHHHHhhHHhCCcc
Confidence 4699999999999999999999999999999931000 001123589999999999999998888777777777888876
Q ss_pred cCCC-CCCChHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEeEEEEecCCEEEE---cC--EEEEeCeEEEcCCCCCCCC
Q 008860 151 YGTE-PQHDWSTLIANKNAELQRLTGIYKNILINAGITLIEGRGKIVDPHTVDV---DG--KLYSARHILISVGGRPFIP 224 (551)
Q Consensus 151 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~i~~~~v~v---~g--~~~~~d~lviAtG~~p~~p 224 (551)
.... ...+|..+..+....++.+...+...+...+|+++.+.+.+++.+.+.+ ++ ..+.||+||||||++|+.|
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~~~~~v~v~~~~g~~~~~~~d~lviAtGs~p~~p 264 (598)
T 2x8g_A 185 LDRSKISHNWSTMVEGVQSHIGSLNWGYKVALRDNQVTYLNAKGRLISPHEVQITDKNQKVSTITGNKIILATGERPKYP 264 (598)
T ss_dssp CCGGGCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECSEEEEEETTEEEEECTTCCEEEEEEEEEEECCCEEECCC
T ss_pred ccCCcCccCHHHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEEEEEEcCCCEEEEEeCCCCeEEEEeCEEEEeCCCCCCCC
Confidence 5432 5689999999888888877766666677889999999999999998887 34 5799999999999999999
Q ss_pred CCCCCC-ceecchhhhcCCCCCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCCCCCHHHHHHHHHHHHhcCcEE
Q 008860 225 DIPGSE-YAIDSDAALDLPSKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRDFVAEQMSLRGIEF 303 (551)
Q Consensus 225 ~i~g~~-~~~~~~~~~~~~~~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i 303 (551)
++||.+ ..++.++++.+...+++++|||+|++|+|+|..|+++|.+|+++++. .+++.+++++.+.+.+.+++.||++
T Consensus 265 ~i~G~~~~~~~~~~~~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~-~~l~~~d~~~~~~~~~~l~~~gv~i 343 (598)
T 2x8g_A 265 EIPGAVEYGITSDDLFSLPYFPGKTLVIGASYVALECAGFLASLGGDVTVMVRS-ILLRGFDQQMAEKVGDYMENHGVKF 343 (598)
T ss_dssp SSTTHHHHCEEHHHHTTCSSCCCSEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CSSTTSCHHHHHHHHHHHHHTTCEE
T ss_pred CCCCcccceEcHHHHhhCccCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEECC-cCcCcCCHHHHHHHHHHHHhCCCEE
Confidence 999964 45677888887778899999999999999999999999999999998 6778899999999999999999999
Q ss_pred EcCcccEEEEEc-----CC---ceEEE--EECCCeEEE--eeEEEEecCcCCCCCCCCccccCeeecCCCCeEeCCCCCC
Q 008860 304 HTEESPQAILKS-----TD---GSLSV--KTNKGTVDG--FSHVMFATGRRPNTKNLGLEKVGVKMTKNGAIEVDEYSGT 371 (551)
Q Consensus 304 ~~~~~v~~i~~~-----~~---~~~~V--~~~~G~~i~--~d~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~t 371 (551)
++++.++++... ++ +.+.+ .+.+|++++ +|.||+|+|++|+++++.++..|++++++|+|.||+++||
T Consensus 344 ~~~~~v~~v~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~G~i~vd~~~~t 423 (598)
T 2x8g_A 344 AKLCVPDEIKQLKVVDTENNKPGLLLVKGHYTDGKKFEEEFETVIFAVGREPQLSKVLCETVGVKLDKNGRVVCTDDEQT 423 (598)
T ss_dssp EETEEEEEEEEEECCBTTTTBCCEEEEEEEETTSCEEEEEESEEEECSCEEECGGGTBCGGGCCCBCTTSCBCCCTTSBC
T ss_pred EECCeEEEEEeccccccccCCCceEEEEEEeCCCcEEeccCCEEEEEeCCccccCccCchhcCceECCCCcEEeCCCCcC
Confidence 999988888642 11 32333 356787655 9999999999999988767888999999999999999999
Q ss_pred CCCcEEEeCcCC-CCCCChHHHHHhHHHHHHHHcCCCCCCCCCCCccEEEecCCceEEeeCCHHHHHhcCC--CeEEEEe
Q 008860 372 AVPSIWAVGDVT-DRINLTPVALMEGGALAKTLFQAEPTKPDYSAVPSAVFSQPPIGQVGLSEEQAIQEYG--DIDVFTA 448 (551)
Q Consensus 372 ~~~~vya~GD~~-~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~~~~~~~~~~~~~vGl~~~~a~~~~~--~~~~~~~ 448 (551)
+.|+|||+|||+ +.+.+++.|..||+++|.||++......+|..+|+++|++|+++++|++|++|++.++ ++.++..
T Consensus 424 s~~~VyA~GD~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~p~~~~~~~~~a~vGl~e~~a~~~~~~~~~~~~~~ 503 (598)
T 2x8g_A 424 TVSNVYAIGDINAGKPQLTPVAIQAGRYLARRLFAGATELTDYSNVATTVFTPLEYGACGLSEEDAIEKYGDKDIEVYHS 503 (598)
T ss_dssp SSTTEEECGGGBTTSCCCHHHHHHHHHHHHHHHHHCCCCCCCCTTCCEEECSSSCEEEEECCHHHHHHHHCGGGEEEEEE
T ss_pred CCCCEEEEeeecCCCCccHHHHHHhHHHHHHHHhcCCCcccCCCCCcEEEECCCceEEEeCCHHHHHhhCCCCcEEEEEE
Confidence 999999999995 4578999999999999999998766667888999999999999999999999988743 4888887
Q ss_pred eccCcccccccC-CCcEEEEEEEEC-CCCeEEEEEEECCChhHHHHHHHHHHHCCCCHHHHccCcccCCCchHHHHHHH
Q 008860 449 NFRPLKATLSGL-PDRIFMKLVLCA-KTNKVLGLHMCGEDAPEIVQGFAVAVKAGLTKADFDATVGVHPTAAEEFVTLR 525 (551)
Q Consensus 449 ~~~~~~~~~~~~-~~~~~~kl~~~~-~~~~ilG~~~~g~~~~e~i~~~~~~i~~~~~~~~l~~~~~~~pt~~e~~~~~~ 525 (551)
+|.+..++...+ ...+|+|+++++ ++|+|+|+|++|+++.|+|+.+++||++++|++||.+++++|||++|.+.++.
T Consensus 504 ~~~~~~~~~~~~~~~~~~~kli~~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~~ 582 (598)
T 2x8g_A 504 NFKPLEWTVAHREDNVCYMKLVCRKSDNMRVLGLHVLGPNAGEITQGYAVAIKMGATKADFDRTIGIHPTCSETFTTLH 582 (598)
T ss_dssp EECCTHHHHTTCCSSCEEEEEEEETTTTTEEEEEEEESTTHHHHHHHHHHHHHTTCBHHHHHHSCCCSSCSGGGGGSCC
T ss_pred eccchhHHhhcCCCCcEEEEEEEecCCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhhccccCCCHHHHHHHHH
Confidence 888777766543 367999999995 69999999999999999999999999999999999999999999999877644
|
| >4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-60 Score=495.37 Aligned_cols=401 Identities=16% Similarity=0.219 Sum_probs=313.7
Q ss_pred cEEEECCChHHHHHHHHHHhCC--CcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhhccCCCccc
Q 008860 74 DLFTIGAGSGGVRASRFAANFG--ASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDESNGFGWKY 151 (551)
Q Consensus 74 dVvIIGgG~aGl~aA~~l~~~G--~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~~ 151 (551)
+|||||||+||++||.+|++.| .+|+|||+ .... +....|+|... ..... . ...
T Consensus 2 KVvIIG~G~AGl~aA~~l~~~g~~~~V~lie~---------~~~~---~~~~~~l~~~~----~~~~~---~-~~~---- 57 (437)
T 4eqs_A 2 KIVVVGAVAGGATCASQIRRLDKESDIIIFEK---------DRDM---SFANCALPYVI----GEVVE---D-RRY---- 57 (437)
T ss_dssp CEEEECCSTTHHHHHHHHHHHCSSSCEEEEES---------SSCS---SBCGGGHHHHH----TTSSC---C-GGG----
T ss_pred eEEEECCCHHHHHHHHHHHhCCCCCcEEEEeC---------CCCC---CCCcchhHHHH----cCCcc---c-hhh----
Confidence 6999999999999999999977 57999993 1111 11222344211 00000 0 000
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEe-EEEEecC--CEEEE------cCEEEEeCeEEEcCCCCCC
Q 008860 152 GTEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIEG-RGKIVDP--HTVDV------DGKLYSARHILISVGGRPF 222 (551)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~i~~--~~v~v------~g~~~~~d~lviAtG~~p~ 222 (551)
...... +.++++.+++++.+ ++..++. +.+.+ ++..+.||+||||||++|+
T Consensus 58 --~~~~~~------------------~~~~~~~~i~~~~~~~V~~id~~~~~~~~~~~~~~~~~~~~yd~lVIATGs~p~ 117 (437)
T 4eqs_A 58 --ALAYTP------------------EKFYDRKQITVKTYHEVIAINDERQTVSVLNRKTNEQFEESYDKLILSPGASAN 117 (437)
T ss_dssp --TBCCCH------------------HHHHHHHCCEEEETEEEEEEETTTTEEEEEETTTTEEEEEECSEEEECCCEEEC
T ss_pred --hhhcCH------------------HHHHHhcCCEEEeCCeEEEEEccCcEEEEEeccCCceEEEEcCEEEECCCCccc
Confidence 000011 12334558998776 4666654 44444 2347899999999999999
Q ss_pred CCCCCCCCc--eecchhhhcCC-----CCCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCCCCCHHHHHHHHHH
Q 008860 223 IPDIPGSEY--AIDSDAALDLP-----SKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRDFVAEQ 295 (551)
Q Consensus 223 ~p~i~g~~~--~~~~~~~~~~~-----~~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~ 295 (551)
.|+++|... ..+.++...++ ..+++++|||+|++|+|+|..++++|.+||++++.+++++.+++++.+.+.+.
T Consensus 118 ~p~i~g~~~~~~~~~~~~~~l~~~~~~~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~ll~~~d~~~~~~~~~~ 197 (437)
T 4eqs_A 118 SLGFESDITFTLRNLEDTDAIDQFIKANQVDKVLVVGAGYVSLEVLENLYERGLHPTLIHRSDKINKLMDADMNQPILDE 197 (437)
T ss_dssp CCCCCCTTEECCSSHHHHHHHHHHHHHHTCCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSCCSTTSCGGGGHHHHHH
T ss_pred cccccCceEEeeccHHHHHHHHHhhhccCCcEEEEECCccchhhhHHHHHhcCCcceeeeeeccccccccchhHHHHHHH
Confidence 999988532 22333333322 24789999999999999999999999999999999999999999999999999
Q ss_pred HHhcCcEEEcCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCcCCCCCCCCccccCeeecCCCCeEeCCCCCCCCCc
Q 008860 296 MSLRGIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNTKNLGLEKVGVKMTKNGAIEVDEYSGTAVPS 375 (551)
Q Consensus 296 l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~t~~~~ 375 (551)
++++||+++++++|++++.+ .+.+.+|+++++|.|++|+|++||+++ ++..|++++++|+|.||+++||++||
T Consensus 198 l~~~gV~i~~~~~v~~~~~~-----~v~~~~g~~~~~D~vl~a~G~~Pn~~~--~~~~gl~~~~~G~I~vd~~~~Ts~p~ 270 (437)
T 4eqs_A 198 LDKREIPYRLNEEINAINGN-----EITFKSGKVEHYDMIIEGVGTHPNSKF--IESSNIKLDRKGFIPVNDKFETNVPN 270 (437)
T ss_dssp HHHTTCCEEESCCEEEEETT-----EEEETTSCEEECSEEEECCCEEESCGG--GTTSSCCCCTTSCEECCTTCBCSSTT
T ss_pred hhccceEEEeccEEEEecCC-----eeeecCCeEEeeeeEEEEeceecCcHH--HHhhhhhhccCCcEecCCCccCCCCC
Confidence 99999999999999988532 378899999999999999999999987 78889999999999999999999999
Q ss_pred EEEeCcCCCC----------CCChHHHHHhHHHHHHHHcCCCC-CCCCCCCccEEEecCCceEEeeCCHHHHHhcCCCeE
Q 008860 376 IWAVGDVTDR----------INLTPVALMEGGALAKTLFQAEP-TKPDYSAVPSAVFSQPPIGQVGLSEEQAIQEYGDID 444 (551)
Q Consensus 376 vya~GD~~~~----------~~~~~~A~~~g~~aa~~i~g~~~-~~~~~~~~~~~~~~~~~~~~vGl~~~~a~~~~~~~~ 444 (551)
|||+|||++. +++++.|.+||+++|+||+|.+. ...++..+|.+.|++|+++++|+||+||++.+ ++
T Consensus 271 IyA~GDva~~~~~~~~~~~~~~~a~~A~~~g~~~a~ni~g~~~~~~~~~~~~~~~~~~~p~ia~vGlte~~a~~~~--~~ 348 (437)
T 4eqs_A 271 IYAIGDIATSHYRHVDLPASVPLAWGAHRAASIVAEQIAGNDTIEFKGFLGNNIVKFFDYTFASVGVKPNELKQFD--YK 348 (437)
T ss_dssp EEECGGGEEEEBSSSSSEECCCSHHHHHHHHHHHHHHHHSCTTCCCCCBCCCEEEEETTEEEEEEESCGGGGGGSC--EE
T ss_pred EEEEEEccCcccccCCccccchhHHHHHHHHHHHHHHHcCCCCcccccceeEEeeeeccceEEEeeCCHHHHHhCC--ce
Confidence 9999999863 46799999999999999999765 34567788999999999999999999998764 44
Q ss_pred EEEeeccCcccccccCCCcEEEEEEEECCCCeEEEEEEECCC-hhHHHHHHHHHHHCCCCHHHHccCcc-cCCCchHHHH
Q 008860 445 VFTANFRPLKATLSGLPDRIFMKLVLCAKTNKVLGLHMCGED-APEIVQGFAVAVKAGLTKADFDATVG-VHPTAAEEFV 522 (551)
Q Consensus 445 ~~~~~~~~~~~~~~~~~~~~~~kl~~~~~~~~ilG~~~~g~~-~~e~i~~~~~~i~~~~~~~~l~~~~~-~~pt~~e~~~ 522 (551)
+....+....+ +..+.+++|+||++|++|++|||+|++|++ +.|+|+.+++||++++|++||.++.+ +||++++.+.
T Consensus 349 ~~~~~~~~~~~-~~~~~~~g~~Kli~d~~~~~ilGa~~~g~~~a~e~i~~~~~ai~~~~t~~~l~~~~~~yhP~~s~~~d 427 (437)
T 4eqs_A 349 MVEVTQGAHAN-YYPGNSPLHLRVYYDTSNRQILRAAAVGKEGADKRIDVLSMAMMNQLTVDELTEFEVAFAPPYSHPKD 427 (437)
T ss_dssp EEEEEEESSCT-TSSSCCEEEEEEEEETTTCBEEEEEEEESSSHHHHHHHHHHHHHTTCBGGGGGGCCCCCCTTTCCSSC
T ss_pred EEEEecCCchh-hcCCCCcEEEEEEEECCCCEEEEEEEECcCCHHHHHHHHHHHHHcCCcHHHHhcCccccCCCCCchHH
Confidence 44433333222 234677899999999999999999999984 89999999999999999999999855 5899998654
Q ss_pred HHHhhh
Q 008860 523 TLRTPT 528 (551)
Q Consensus 523 ~~~~~~ 528 (551)
.+..++
T Consensus 428 ~v~~aa 433 (437)
T 4eqs_A 428 LINMIG 433 (437)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 433333
|
| >3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-58 Score=488.52 Aligned_cols=407 Identities=20% Similarity=0.283 Sum_probs=323.1
Q ss_pred ccEEEECCChHHHHHHHHHHhC--CCcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhhccCCCcc
Q 008860 73 FDLFTIGAGSGGVRASRFAANF--GASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDESNGFGWK 150 (551)
Q Consensus 73 ~dVvIIGgG~aGl~aA~~l~~~--G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~ 150 (551)
+||+|||||+||++||.+|++. |.+|+|||+ ....| |.|+...........
T Consensus 3 ~~VvIIGgG~AGl~aA~~L~~~~~g~~V~vie~---------~~~~g-------~~~~~~~~~~~~~~~----------- 55 (452)
T 3oc4_A 3 LKIVIIGASFAGISAAIASRKKYPQAEISLIDK---------QATVG-------YLSGGLSAYFNHTIN----------- 55 (452)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCSSSEEEEECS---------SSCCS-------SCCC----------------------
T ss_pred CCEEEECCCHHHHHHHHHHHhhCcCCcEEEEEC---------CCCCc-------ccCccchhhhcCCCC-----------
Confidence 6999999999999999999997 899999993 22222 222211111100000
Q ss_pred cCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEe-EEEEecC--CEEEE----cCEEEEeCeEEEcCCCCCCC
Q 008860 151 YGTEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIEG-RGKIVDP--HTVDV----DGKLYSARHILISVGGRPFI 223 (551)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~i~~--~~v~v----~g~~~~~d~lviAtG~~p~~ 223 (551)
++.. +.......+.+.+++++.+ ++..++. +.+.+ ++..+.||++|+|||++|..
T Consensus 56 -------~~~~-----------~~~~~~~~~~~~gi~~~~~~~V~~id~~~~~v~v~~~~~~~~~~~d~lviAtG~~p~~ 117 (452)
T 3oc4_A 56 -------ELHE-----------ARYITEEELRRQKIQLLLNREVVAMDVENQLIAWTRKEEQQWYSYDKLILATGASQFS 117 (452)
T ss_dssp -----------------------CCCCHHHHHHTTEEEECSCEEEEEETTTTEEEEEETTEEEEEECSEEEECCCCCBCC
T ss_pred -------CHHH-----------hhcCCHHHHHHCCCEEEECCEEEEEECCCCEEEEEecCceEEEEcCEEEECCCcccCC
Confidence 0000 0000112345568888654 5555543 45555 56689999999999999999
Q ss_pred CCCCCCC--ceecchhhhc------CCCCCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCCC-CCHHHHHHHHH
Q 008860 224 PDIPGSE--YAIDSDAALD------LPSKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRG-FDEDIRDFVAE 294 (551)
Q Consensus 224 p~i~g~~--~~~~~~~~~~------~~~~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~~-~~~~~~~~l~~ 294 (551)
|++||.+ .+++..++.. ....+++++|||+|++|+|+|..|.++|.+|+++++.+.+++. +++++.+.+.+
T Consensus 118 p~i~g~~~~~v~~~~~~~~~~~~~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~d~~~~~~l~~ 197 (452)
T 3oc4_A 118 TQIRGSQTEKLLKYKFLSGALAAVPLLENSQTVAVIGAGPIGMEAIDFLVKMKKTVHVFESLENLLPKYFDKEMVAEVQK 197 (452)
T ss_dssp CCCBTTTCTTEEEGGGCC----CCHHHHTCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTTTCCHHHHHHHHH
T ss_pred CCCCCCCCCCEEEeCCHHHHHHHHHHHhcCCEEEEECCCHHHHHHHHHHHhCCCeEEEEEccCccccccCCHHHHHHHHH
Confidence 9999975 3554443322 2235899999999999999999999999999999999999987 89999999999
Q ss_pred HHHhcCcEEEcCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCcCCCCCCCCccccCeeecCCCCeEeCCCCCCCCC
Q 008860 295 QMSLRGIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNTKNLGLEKVGVKMTKNGAIEVDEYSGTAVP 374 (551)
Q Consensus 295 ~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~t~~~ 374 (551)
.+++.||+++++++|++++.++++ +.|.+.+| ++++|.||+|+|++|++++ ++.. ++++++|+|.||+++||+.|
T Consensus 198 ~l~~~GV~i~~~~~v~~i~~~~~~-v~v~~~~g-~i~aD~Vv~A~G~~p~~~~--l~~~-~~~~~~g~i~vd~~~~t~~~ 272 (452)
T 3oc4_A 198 SLEKQAVIFHFEETVLGIEETANG-IVLETSEQ-EISCDSGIFALNLHPQLAY--LDKK-IQRNLDQTIAVDAYLQTSVP 272 (452)
T ss_dssp HHHTTTEEEEETCCEEEEEECSSC-EEEEESSC-EEEESEEEECSCCBCCCSS--CCTT-SCBCTTSCBCCCTTCBCSST
T ss_pred HHHHcCCEEEeCCEEEEEEccCCe-EEEEECCC-EEEeCEEEECcCCCCChHH--HHhh-hccCCCCCEEECcCccCCCC
Confidence 999999999999999999876666 57888777 7999999999999999987 3443 78888999999999999999
Q ss_pred cEEEeCcCCCC----------CCChHHHHHhHHHHHHHHcCCCCCCC-CCCCccEEEecCCceEEeeCCHHHHHhcCCCe
Q 008860 375 SIWAVGDVTDR----------INLTPVALMEGGALAKTLFQAEPTKP-DYSAVPSAVFSQPPIGQVGLSEEQAIQEYGDI 443 (551)
Q Consensus 375 ~vya~GD~~~~----------~~~~~~A~~~g~~aa~~i~g~~~~~~-~~~~~~~~~~~~~~~~~vGl~~~~a~~~~~~~ 443 (551)
+|||+|||++. +++++.|..||+++|.||+|....+. .+..+|+.+|+ ++++++|++|+||++.+.++
T Consensus 273 ~IyA~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~~~~~~~~-~~~a~vG~te~~a~~~g~~~ 351 (452)
T 3oc4_A 273 NVFAIGDCISVMNEPVAETFYAPLVNNAVRTGLVVANNLEEKTHRFIGSLRTMGTKVGD-YYLASTGLTETEGLFFPQTL 351 (452)
T ss_dssp TEEECGGGBCEEEGGGTEEECCCCHHHHHHHHHHHTTSSSSCCCCCCCCCCCEEEEETT-EEEEEEECCSGGGGGSSSCE
T ss_pred CEEEEEeeEEeccccCCceeecchHHHHHHHHHHHHHHhcCCCccCCCccccEEEEEcC-eeEEEecCCHHHHHHCCCce
Confidence 99999999985 36899999999999999998765433 56678899995 69999999999999887777
Q ss_pred EEEEeeccCcccccccCCCcEEEEEEEECCCCeEEEEEEECC-ChhHHHHHHHHHHHCCCCHHHHccC-cccCCCchHHH
Q 008860 444 DVFTANFRPLKATLSGLPDRIFMKLVLCAKTNKVLGLHMCGE-DAPEIVQGFAVAVKAGLTKADFDAT-VGVHPTAAEEF 521 (551)
Q Consensus 444 ~~~~~~~~~~~~~~~~~~~~~~~kl~~~~~~~~ilG~~~~g~-~~~e~i~~~~~~i~~~~~~~~l~~~-~~~~pt~~e~~ 521 (551)
.+...++.. ++ ..+.+.+|+|+++|+++++|||+|++|+ ++.|+|+.+++||++|+|++||.++ +++|||++|.+
T Consensus 352 ~~~~~~~~~--~~-~~~~~~~~~kli~~~~~~~ilG~~~~g~~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~~P~~~~~~ 428 (452)
T 3oc4_A 352 ASIIVRQPA--PP-LQHGTEILGKLIYDKVTQRVLGAQLCSKNNCLEKINTLALSIQTGQTLTDLLQKDYFYQPSLTNIY 428 (452)
T ss_dssp EEEEEEEEC--TT-TTCSCEEEEEEEEETTTCBEEEEEEEESSCCTHHHHHHHHHHHTTCBHHHHHTCCCCCCTTTSCSS
T ss_pred EEEEEecCC--cc-CCCCCeEEEEEEEECCCCEEEEEEEEeCCCHHHHHHHHHHHHHcCCCHHHHHhhHhccCCCCCCch
Confidence 776655433 23 3456789999999999999999999999 8999999999999999999999998 89999999988
Q ss_pred HHHHhhhhhhcC
Q 008860 522 VTLRTPTRKIRK 533 (551)
Q Consensus 522 ~~~~~~~~~~~~ 533 (551)
..+..++.++.+
T Consensus 429 ~~~~~a~~~~~~ 440 (452)
T 3oc4_A 429 DITNLMGASAYW 440 (452)
T ss_dssp CHHHHHHHHHHH
T ss_pred hHHHHHHHHHHH
Confidence 777776665544
|
| >3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-58 Score=486.59 Aligned_cols=412 Identities=25% Similarity=0.331 Sum_probs=327.6
Q ss_pred CccEEEECCChHHHHHHHHHHhC--CCcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhhccCCCc
Q 008860 72 DFDLFTIGAGSGGVRASRFAANF--GASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDESNGFGW 149 (551)
Q Consensus 72 ~~dVvIIGgG~aGl~aA~~l~~~--G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~ 149 (551)
++||+|||||+||+++|..|++. |.+|+|||+ ....++. ...+|..
T Consensus 3 ~~~VvIIGgG~aGl~aA~~L~~~~~~~~V~vie~---------~~~~~~~---~~~~p~~-------------------- 50 (449)
T 3kd9_A 3 LKKVVIIGGGAAGMSAASRVKRLKPEWDVKVFEA---------TEWVSHA---PCGIPYV-------------------- 50 (449)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECS---------SSCCC--------------------------------
T ss_pred cCcEEEECCcHHHHHHHHHHHHhCcCCCEEEEEC---------CCccccC---CcCCccc--------------------
Confidence 47999999999999999999996 889999993 2222111 0011210
Q ss_pred ccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEe-EEEEecCCEEEE---cC-EEEEeCeEEEcCCCCCCCC
Q 008860 150 KYGTEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIEG-RGKIVDPHTVDV---DG-KLYSARHILISVGGRPFIP 224 (551)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~i~~~~v~v---~g-~~~~~d~lviAtG~~p~~p 224 (551)
..+ ..++..+..+. ...+.++.+++++.+ ++..++.....+ ++ ..+.||+||+|||++|+.|
T Consensus 51 -~~~--~~~~~~~~~~~----------~~~~~~~~gi~v~~~~~v~~i~~~~~~v~~~~g~~~~~~d~lviAtG~~p~~p 117 (449)
T 3kd9_A 51 -VEG--LSTPDKLMYYP----------PEVFIKKRGIDLHLNAEVIEVDTGYVRVRENGGEKSYEWDYLVFANGASPQVP 117 (449)
T ss_dssp ----------------------------CTHHHHTTCEEETTCEEEEECSSEEEEECSSSEEEEECSEEEECCCEEECCC
T ss_pred -cCC--CCCHHHhhhcC----------HHHHHHhcCcEEEecCEEEEEecCCCEEEECCceEEEEcCEEEECCCCCCCCC
Confidence 000 00111111100 011225679999988 778888765555 44 4899999999999999999
Q ss_pred CCCCCCc--ee---cchhhhcCC-----CCCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCCC-CCHHHHHHHH
Q 008860 225 DIPGSEY--AI---DSDAALDLP-----SKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRG-FDEDIRDFVA 293 (551)
Q Consensus 225 ~i~g~~~--~~---~~~~~~~~~-----~~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~~-~~~~~~~~l~ 293 (551)
++||.+. ++ +.++...+. ..+++++|||+|++|+|+|..|++.|.+|+++++.+++++. +++++.+.+.
T Consensus 118 ~i~G~~~~~v~~~~~~~~~~~~~~~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~ 197 (449)
T 3kd9_A 118 AIEGVNLKGVFTADLPPDALAIREYMEKYKVENVVIIGGGYIGIEMAEAFAAQGKNVTMIVRGERVLRRSFDKEVTDILE 197 (449)
T ss_dssp SCBTTTSTTEECSCSTHHHHHHHHHHSSSCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTTTSCHHHHHHHH
T ss_pred CCCCCCCCCEEEeCCHHHHHHHHHHHHhcCCCeEEEECCCHHHHHHHHHHHhCCCeEEEEEcCCccchhhcCHHHHHHHH
Confidence 9999752 33 334443322 14689999999999999999999999999999999999988 9999999999
Q ss_pred HHHHhcCcEEEcCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCcCCCCCCCCccccCeeecCCCCeEeCCCCCCCC
Q 008860 294 EQMSLRGIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNTKNLGLEKVGVKMTKNGAIEVDEYSGTAV 373 (551)
Q Consensus 294 ~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~t~~ 373 (551)
+.+++. |++++++.|.+++.++ + +...+.+|+++++|.||+|+|++|++++ ++..|++++++|+|.||+++||+.
T Consensus 198 ~~l~~~-v~i~~~~~v~~i~~~~-~-v~~v~~~g~~i~~D~Vv~a~G~~p~~~l--~~~~gl~~~~~G~i~vd~~~~t~~ 272 (449)
T 3kd9_A 198 EKLKKH-VNLRLQEITMKIEGEE-R-VEKVVTDAGEYKAELVILATGIKPNIEL--AKQLGVRIGETGAIWTNEKMQTSV 272 (449)
T ss_dssp HHHTTT-SEEEESCCEEEEECSS-S-CCEEEETTEEEECSEEEECSCEEECCHH--HHHTTCCBCTTSSBCCCTTCBCSS
T ss_pred HHHHhC-cEEEeCCeEEEEeccC-c-EEEEEeCCCEEECCEEEEeeCCccCHHH--HHhCCccCCCCCCEEECCCCccCC
Confidence 999999 9999999999998654 3 3333556778999999999999999987 678899999999999999999999
Q ss_pred CcEEEeCcCCC-------C---CCChHHHHHhHHHHHHHHcCCCCCCCCCCCccEEEecCCceEEeeCCHHHHHhcCCCe
Q 008860 374 PSIWAVGDVTD-------R---INLTPVALMEGGALAKTLFQAEPTKPDYSAVPSAVFSQPPIGQVGLSEEQAIQEYGDI 443 (551)
Q Consensus 374 ~~vya~GD~~~-------~---~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~~~~~~~~~~~~~vGl~~~~a~~~~~~~ 443 (551)
|+|||+|||+. . +++++.|..||+++|+||+|....+..+...|++.|++|+++++|++|+||++.+.++
T Consensus 273 ~~IyA~GD~~~~~~~~~g~~~~~~l~~~A~~~g~~aa~~i~g~~~~~~~~~~~~~~~~~~~~~~~vG~~e~~a~~~g~~~ 352 (449)
T 3kd9_A 273 ENVYAAGDVAETRHVITGRRVWVPLAPAGNKMGYVAGSNIAGKELHFPGVLGTAVTKFMDVEIGKTGLTEMEALKEGYDV 352 (449)
T ss_dssp TTEEECSTTBCEEBTTTCSEECCCCHHHHHHHHHHHHHHHTTCCCCCCCBCCCEEEEETTEEEEEEECCHHHHHHTTCCE
T ss_pred CCEEEeeeeeeeccccCCceEEeccHHHHHHHHHHHHHHhcCCCccCCCcccceEEEEcCcEEEEecCCHHHHHHCCCce
Confidence 99999999984 2 5789999999999999999977655556678899999999999999999999987676
Q ss_pred EEEEeeccCccccccc-CCCcEEEEEEEECCCCeEEEEEEECCChhHHHHHHHHHHHCCCCHHHHccC-cccCCCchHHH
Q 008860 444 DVFTANFRPLKATLSG-LPDRIFMKLVLCAKTNKVLGLHMCGEDAPEIVQGFAVAVKAGLTKADFDAT-VGVHPTAAEEF 521 (551)
Q Consensus 444 ~~~~~~~~~~~~~~~~-~~~~~~~kl~~~~~~~~ilG~~~~g~~~~e~i~~~~~~i~~~~~~~~l~~~-~~~~pt~~e~~ 521 (551)
.+.... ...++... +.+.+|+||++|+++|+|||+|++|+++.|+|+.+++||++|+|++||.++ +++||+++|.+
T Consensus 353 ~~~~~~--~~~~~~~~~~~~~~~~kli~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~~p~~~~~~ 430 (449)
T 3kd9_A 353 RTAFIK--ASTRPHYYPGGREIWLKGVVDNETNRLLGVQVVGSDILPRIDTAAAMLMAGFTTKDAFFTDLAYAPPFAPVW 430 (449)
T ss_dssp EEEEEE--EESSCTTSTTCCEEEEEEEEETTTCBEEEEEEEESSCHHHHHHHHHHHHTTCBHHHHHTCCCCCBTTTBCSS
T ss_pred EEEEEe--cCCccccCCCCceEEEEEEEECCCCEEEEEEEEChHHHHHHHHHHHHHHcCCcHHHHhhcccccCCCCCCch
Confidence 655433 33444333 567899999999999999999999999999999999999999999999988 77999999999
Q ss_pred HHHHhhhhhhcCCC
Q 008860 522 VTLRTPTRKIRKSP 535 (551)
Q Consensus 522 ~~~~~~~~~~~~~~ 535 (551)
..+..++++++++.
T Consensus 431 ~~~~~~~~~~~~~~ 444 (449)
T 3kd9_A 431 DPLIVLARVLKEGH 444 (449)
T ss_dssp CHHHHHHHHHHCC-
T ss_pred hHHHHHHHHHhhcc
Confidence 88888888887653
|
| >2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-56 Score=470.03 Aligned_cols=410 Identities=21% Similarity=0.273 Sum_probs=322.3
Q ss_pred ccEEEECCChHHHHHHHHHHhC--CCcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhhccCCCcc
Q 008860 73 FDLFTIGAGSGGVRASRFAANF--GASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDESNGFGWK 150 (551)
Q Consensus 73 ~dVvIIGgG~aGl~aA~~l~~~--G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~ 150 (551)
+||+|||||++|+++|..|++. |.+|+|||+ ....+ +.++....+..... .
T Consensus 1 ~dvvIIGgG~aGl~aA~~l~~~~~g~~V~lie~---------~~~~~-------~~~~~~~~~~~g~~---~-------- 53 (452)
T 2cdu_A 1 MKVIVVGCTHAGTFAVKQTIADHPDADVTAYEM---------NDNIS-------FLSCGIALYLGKEI---K-------- 53 (452)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCTTCEEEEEES---------SSCCC-------BCGGGHHHHHTTCB---G--------
T ss_pred CeEEEECCCHHHHHHHHHHHhhCcCCcEEEEEC---------CCCCC-------cccccchhhhcCCc---c--------
Confidence 5899999999999999999997 999999993 11111 12222111111000 0
Q ss_pred cCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEeE-EEEec--CCEEEE-c-----CEEEEeCeEEEcCCCCC
Q 008860 151 YGTEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIEGR-GKIVD--PHTVDV-D-----GKLYSARHILISVGGRP 221 (551)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~i~--~~~v~v-~-----g~~~~~d~lviAtG~~p 221 (551)
..++..+.. .....+.+.+++++.+. +..++ .+.+.+ + +..+.||++|+|||++|
T Consensus 54 -----~~~~~~~~~-----------~~~~~~~~~gv~~~~~~~v~~i~~~~~~v~v~~~~~g~~~~~~~d~lviAtGs~p 117 (452)
T 2cdu_A 54 -----NNDPRGLFY-----------SSPEELSNLGANVQMRHQVTNVDPETKTIKVKDLITNEEKTEAYDKLIMTTGSKP 117 (452)
T ss_dssp -----GGCGGGGBS-----------CCHHHHHHTTCEEEESEEEEEEEGGGTEEEEEETTTCCEEEEECSEEEECCCEEE
T ss_pred -----cCCHHHhhh-----------cCHHHHHHcCCEEEeCCEEEEEEcCCCEEEEEecCCCceEEEECCEEEEccCCCc
Confidence 001111100 01123455689987764 66664 567776 2 46899999999999999
Q ss_pred CCCCCCCCC--ceecc------hhhhcCCCCCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCC-CCCHHHHHHH
Q 008860 222 FIPDIPGSE--YAIDS------DAALDLPSKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLR-GFDEDIRDFV 292 (551)
Q Consensus 222 ~~p~i~g~~--~~~~~------~~~~~~~~~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~-~~~~~~~~~l 292 (551)
..|++||.+ .+++. ++++.....+++++|||+|++|+|+|..|+++|.+|+++++.+.+++ .+++++.+.+
T Consensus 118 ~~p~i~g~~~~~v~~~~~~~~~~~~~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l 197 (452)
T 2cdu_A 118 TVPPIPGIDSSRVYLCKNYNDAKKLFEEAPKAKTITIIGSGYIGAELAEAYSNQNYNVNLIDGHERVLYKYFDKEFTDIL 197 (452)
T ss_dssp CCCCCTTTTSTTEEECSSHHHHHHHHHHGGGCSEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSTTTTTSCHHHHHHH
T ss_pred CCCCCCCCCCCCEEEeCcHHHHHHHHHHhccCCeEEEECcCHHHHHHHHHHHhcCCEEEEEEcCCchhhhhhhhhHHHHH
Confidence 999999874 34432 23334445689999999999999999999999999999999999998 5999999999
Q ss_pred HHHHHhcCcEEEcCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCcCCCCCCCCccccCeeecCCCCeEeCCCCCCC
Q 008860 293 AEQMSLRGIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNTKNLGLEKVGVKMTKNGAIEVDEYSGTA 372 (551)
Q Consensus 293 ~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~t~ 372 (551)
.+.+++.||+++++++|++++.++++...+.+ +|+++++|.||+|+|++|++++ ++.. ++++++|+|.||+++||+
T Consensus 198 ~~~l~~~Gv~i~~~~~v~~i~~~~~~v~~v~~-~g~~i~~D~vv~a~G~~p~~~l--l~~~-l~~~~~G~i~Vd~~~~t~ 273 (452)
T 2cdu_A 198 AKDYEAHGVNLVLGSKVAAFEEVDDEIITKTL-DGKEIKSDIAILCIGFRPNTEL--LKGK-VAMLDNGAIITDEYMHSS 273 (452)
T ss_dssp HHHHHHTTCEEEESSCEEEEEEETTEEEEEET-TSCEEEESEEEECCCEEECCGG--GTTT-SCBCTTSCBCCCTTSBCS
T ss_pred HHHHHHCCCEEEcCCeeEEEEcCCCeEEEEEe-CCCEEECCEEEECcCCCCCHHH--HHHh-hhcCCCCCEEECCCcCcC
Confidence 99999999999999999999875444223444 7888999999999999999987 5666 888888999999999999
Q ss_pred CCcEEEeCcCCCC----------CCChHHHHHhHHHHHHHHcCCCCCCCCCCCccEEEecCCceEEeeCCHHHHHhcCCC
Q 008860 373 VPSIWAVGDVTDR----------INLTPVALMEGGALAKTLFQAEPTKPDYSAVPSAVFSQPPIGQVGLSEEQAIQEYGD 442 (551)
Q Consensus 373 ~~~vya~GD~~~~----------~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~~~~~~~~~~~~~vGl~~~~a~~~~~~ 442 (551)
.|+|||+|||+.. +++++.|..||+++|+||+|....+..+...++..|++|+++++|+++++|++.+.+
T Consensus 274 ~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~a~~~g~~ 353 (452)
T 2cdu_A 274 NRDIFAAGDSAAVHYNPTNSNAYIPLATNAVRQGRLVGLNLTEDKVKDMGTQSSSGLKLYGRTYVSTGINTALAKANNLK 353 (452)
T ss_dssp STTEEECSTTBCEEETTTTEEECCCCHHHHHHHHHHHHHTSSSCCCCCCCBCCCEEEEETTEEEEEEECCHHHHHHTTCC
T ss_pred CCCEEEcceEEEeccccCCCeeecchHHHHHHHHHHHHHHhCCCCCcCCCccceEEEEECCeeeEeecCCHHHHHHcCCc
Confidence 9999999999983 478999999999999999986544445556677777799999999999999988766
Q ss_pred eEEEEeeccCccccccc-CCCcEEEEEEEECCCCeEEEEEEECC-ChhHHHHHHHHHHHCCCCHHHHccC-cccCCCchH
Q 008860 443 IDVFTANFRPLKATLSG-LPDRIFMKLVLCAKTNKVLGLHMCGE-DAPEIVQGFAVAVKAGLTKADFDAT-VGVHPTAAE 519 (551)
Q Consensus 443 ~~~~~~~~~~~~~~~~~-~~~~~~~kl~~~~~~~~ilG~~~~g~-~~~e~i~~~~~~i~~~~~~~~l~~~-~~~~pt~~e 519 (551)
+.+.. +....++... ..+.+|+|+++|+++|+|+|+|++|+ ++.|+|+.++++|++++|++||..+ +++|||++|
T Consensus 354 ~~~~~--~~~~~~~~~~~~~~~~~~k~~~~~~~~~ilG~~~~g~~~~~~~i~~~~~ai~~~~~~~~l~~~~~~~~Pt~~e 431 (452)
T 2cdu_A 354 VSEVI--IADNYRPEFMLSTDEVLMSLVYDPKTRVILGGALSSMHDVSQSANVLSVCIQNKNTIDDLAMVDMLFQPQFDR 431 (452)
T ss_dssp CEEEE--EEEESSCTTBSCCCEEEEEEEECTTTCBEEEEEEEESSCCHHHHHHHHHHHHTTCBHHHHHHSCCCCCTTTCC
T ss_pred eEEEE--EecCCccccCCCCceEEEEEEEECCCCEEEEEEEEcCccHHHHHHHHHHHHHcCCCHHHHhhhhhccCCCCCc
Confidence 66553 3444444333 45679999999988999999999999 8999999999999999999999986 899999999
Q ss_pred HHHHHHhhhhhh
Q 008860 520 EFVTLRTPTRKI 531 (551)
Q Consensus 520 ~~~~~~~~~~~~ 531 (551)
.+..+..++..+
T Consensus 432 ~~~~~~~aa~~~ 443 (452)
T 2cdu_A 432 PFNYLNILGQAA 443 (452)
T ss_dssp SSCHHHHHHHHH
T ss_pred hHHHHHHHHHHH
Confidence 888776666544
|
| >3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-57 Score=479.52 Aligned_cols=416 Identities=19% Similarity=0.249 Sum_probs=304.7
Q ss_pred CccEEEECCChHHHHHHHHHHhC--CCcEEEEccCCCCCCCCCCCCCCCeeccCCC-cchHHHHHhhhhhhHhhhccCCC
Q 008860 72 DFDLFTIGAGSGGVRASRFAANF--GASVAICELPFSTISSETTGGVGGTCVLRGC-VPKKLLVYASKFSHEFDESNGFG 148 (551)
Q Consensus 72 ~~dVvIIGgG~aGl~aA~~l~~~--G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~-~p~~~l~~~~~~~~~~~~~~~~g 148 (551)
++||+|||||++|+++|..|++. |.+|+|||+ ...++ +..| +|..
T Consensus 3 ~~~VvIIGaG~aGl~aA~~L~~~~~g~~Vtvie~---------~~~~~----~~~~gl~~~------------------- 50 (472)
T 3iwa_A 3 LKHVVVIGAVALGPKAACRFKRLDPEAHVTMIDQ---------ASRIS----YGGCGIPYY------------------- 50 (472)
T ss_dssp -CEEEEECCSSHHHHHHHHHHHHCTTSEEEEECC---------C------------------------------------
T ss_pred CCcEEEECCCHHHHHHHHHHHhhCcCCCEEEEEC---------CCccc----ccccccchh-------------------
Confidence 46999999999999999999997 899999993 11111 0000 1110
Q ss_pred cccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEe-EEEEec--CCEEEE-c---CE--EEEeCeEEEcCCC
Q 008860 149 WKYGTEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIEG-RGKIVD--PHTVDV-D---GK--LYSARHILISVGG 219 (551)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~i~--~~~v~v-~---g~--~~~~d~lviAtG~ 219 (551)
..+ ...+...+..... .+......+.++.++++..+ ++..++ .+.+.+ + +. .+.||++|+|||+
T Consensus 51 --~~g-~~~~~~~~~~~~~----~~~~~~~~~~~~~gi~~~~~~~V~~id~~~~~v~~~~~~~g~~~~~~~d~lviAtG~ 123 (472)
T 3iwa_A 51 --VSG-EVSNIESLQATPY----NVVRDPEFFRINKDVEALVETRAHAIDRAAHTVEIENLRTGERRTLKYDKLVLALGS 123 (472)
T ss_dssp -------------------------------------CEEECSEEEEEEETTTTEEEEEETTTCCEEEEECSEEEECCCE
T ss_pred --hcC-CCCchHHhccccc----hhccCHHHHhhhcCcEEEECCEEEEEECCCCEEEEeecCCCCEEEEECCEEEEeCCC
Confidence 000 0000001100000 01111112223457887653 555655 345555 2 44 7899999999999
Q ss_pred CCCCCCCCCCC--cee---cchhhhcCC-----CCCCeEEEEcCcHHHHHHHHHHHhC-CCeEEEEeecCccCC-CCCHH
Q 008860 220 RPFIPDIPGSE--YAI---DSDAALDLP-----SKPEKIAIVGGGYIALEFAGIFSGL-TSEVHVFIRQKKVLR-GFDED 287 (551)
Q Consensus 220 ~p~~p~i~g~~--~~~---~~~~~~~~~-----~~~~~vvViG~G~~g~e~a~~l~~~-g~~Vtlv~~~~~~l~-~~~~~ 287 (551)
+|..|++||.+ .++ +.++...+. ..+++++|||+|++|+|+|..+.+. |.+|+++++.+.+++ .++++
T Consensus 124 ~p~~p~i~G~~~~~v~~~~~~~~~~~l~~~l~~~~~~~vvViGgG~~g~e~A~~l~~~~g~~Vtlv~~~~~~l~~~~~~~ 203 (472)
T 3iwa_A 124 KANRPPVEGMDLAGVTPVTNLDEAEFVQHAISAGEVSKAVIVGGGFIGLEMAVSLADMWGIDTTVVELADQIMPGFTSKS 203 (472)
T ss_dssp EECCCSCTTTTSBTEEECCSHHHHHHHHHHCCTTSCSEEEEECCSHHHHHHHHHHHHHHCCEEEEECSSSSSSTTTSCHH
T ss_pred CcCCCCCCCCCCCCEEEeCCHHHHHHHHHHhhcCCCCEEEEECCCHHHHHHHHHHHHhcCCcEEEEEccCcccccccCHH
Confidence 99999999975 232 333333332 4579999999999999999999999 999999999999999 79999
Q ss_pred HHHHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCcCCCCCCCCccccCeeecCCCCeEeCC
Q 008860 288 IRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNTKNLGLEKVGVKMTKNGAIEVDE 367 (551)
Q Consensus 288 ~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~ 367 (551)
+.+.+.+.+++.||+++++++|++++.+++. +.+.+.+|+++++|.||+|+|++|++++ ++..|++++++|+|.||+
T Consensus 204 ~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~-v~v~~~~g~~i~aD~Vv~a~G~~p~~~l--~~~~gl~~~~~g~i~vd~ 280 (472)
T 3iwa_A 204 LSQMLRHDLEKNDVVVHTGEKVVRLEGENGK-VARVITDKRTLDADLVILAAGVSPNTQL--ARDAGLELDPRGAIIVDT 280 (472)
T ss_dssp HHHHHHHHHHHTTCEEECSCCEEEEEESSSB-EEEEEESSCEEECSEEEECSCEEECCHH--HHHHTCCBCTTCCEECCT
T ss_pred HHHHHHHHHHhcCCEEEeCCEEEEEEccCCe-EEEEEeCCCEEEcCEEEECCCCCcCHHH--HHhCCccCCCCCCEEECC
Confidence 9999999999999999999999999886555 6688889989999999999999999986 677899999999999999
Q ss_pred CCCCCCCcEEEeCcCCC-------C---CCChHHHHHhHHHHHHHHcCCCCCCCCCCCccEEEecCCceEEeeCCHHHHH
Q 008860 368 YSGTAVPSIWAVGDVTD-------R---INLTPVALMEGGALAKTLFQAEPTKPDYSAVPSAVFSQPPIGQVGLSEEQAI 437 (551)
Q Consensus 368 ~~~t~~~~vya~GD~~~-------~---~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~~~~~~~~~~~~~vGl~~~~a~ 437 (551)
++||+.|+|||+|||+. . +++++.|..||+++|+||+|....+..+...+++.|++|+++++|++|+||+
T Consensus 281 ~~~t~~~~Iya~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~~~~~~~~~~~a~vG~~e~~a~ 360 (472)
T 3iwa_A 281 RMRTSDPDIFAGGDCVTIPNLVTGKPGFFPLGSMANRQGRVIGTNLADGDATFPGAVGSWAVKLFEGSASGAGLTVEGAL 360 (472)
T ss_dssp TCBCSSTTEEECGGGEEEEBTTTSSEECCCCTTHHHHHHHHHHHHHTTCCCCCCCBCCCEEEECSSCEEEEEECCHHHHH
T ss_pred CcccCCCCEEEeccceecccccCCceeecchHHHHHHHHHHHHHHhcCCCccCCCCCcceEEEECCceeEEEECCHHHHH
Confidence 99999999999999983 2 4688999999999999999876544333344556788999999999999999
Q ss_pred hcCCCeEEEEeeccCccccccc-CCCcEEEEEEEECCCCeEEEEEEECC---ChhHHHHHHHHHHHCCCCHHHHccCccc
Q 008860 438 QEYGDIDVFTANFRPLKATLSG-LPDRIFMKLVLCAKTNKVLGLHMCGE---DAPEIVQGFAVAVKAGLTKADFDATVGV 513 (551)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~kl~~~~~~~~ilG~~~~g~---~~~e~i~~~~~~i~~~~~~~~l~~~~~~ 513 (551)
+++.++.+... ....++... +.+.+|+||++|+++|+|||+|++|+ .+.|+|+.+++||++|+|++||.+++++
T Consensus 361 ~~g~~~~~~~~--~~~~~~~~~~~~~~~~~kli~~~~~~~ilG~~~~g~~~~~~~~~i~~~~~ai~~~~t~~~l~~~~~~ 438 (472)
T 3iwa_A 361 REGYDAVNVHV--EQFDRAHFYPEKTIMTLQLVVDRPTRRVLGIQGFSTLGDALTARINAVATMLASKPTVEDISNAEVV 438 (472)
T ss_dssp HTTCCEEEEEE--EC-----------CEEEEEEEETTTCBEEEEEEEESCHHHHHHHHHHHHHHHTTCCBHHHHHTCCCC
T ss_pred HcCCceEEEEE--ecCCccCccCCCceEEEEEEEECCCCEEEEEEEECCCcccHHHHHHHHHHHHHcCCCHHHHhccccc
Confidence 98767766543 334455444 67789999999999999999999999 4589999999999999999999999999
Q ss_pred C-CCchHHHHHHHhhhhhh
Q 008860 514 H-PTAAEEFVTLRTPTRKI 531 (551)
Q Consensus 514 ~-pt~~e~~~~~~~~~~~~ 531 (551)
| ||++|.+..+..++.++
T Consensus 439 ~~P~~~~~~~~~~~~~~~~ 457 (472)
T 3iwa_A 439 YSPPFASAMDIVNVAGNVA 457 (472)
T ss_dssp --------CCHHHHHHHHH
T ss_pred CCCCCCCcccHHHHHHHHH
Confidence 8 99999888766666554
|
| >1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-55 Score=460.98 Aligned_cols=408 Identities=22% Similarity=0.291 Sum_probs=319.7
Q ss_pred ccEEEECCChHHHHHHHHHHhC--CCcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhhccCCCcc
Q 008860 73 FDLFTIGAGSGGVRASRFAANF--GASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDESNGFGWK 150 (551)
Q Consensus 73 ~dVvIIGgG~aGl~aA~~l~~~--G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~ 150 (551)
+||+|||||+||+++|..|++. |.+|+|||+ ....| +.++....+.... .
T Consensus 1 ~dvvIIG~G~aGl~aA~~l~~~~~g~~V~lie~---------~~~~~-------~~~~~~~~~~~~~---~--------- 52 (447)
T 1nhp_A 1 MKVIVLGSSHGGYEAVEELLNLHPDAEIQWYEK---------GDFIS-------FLSAGMQLYLEGK---V--------- 52 (447)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHCTTSEEEEEES---------SSSSS-------BCGGGHHHHHTTS---S---------
T ss_pred CeEEEECCCHHHHHHHHHHHHhCcCCeEEEEEC---------CCccC-------cccccchhhhcCc---c---------
Confidence 4899999999999999999996 999999993 11122 1222111111000 0
Q ss_pred cCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEeE-EEEe--cCCEEEE-c---CE--EEEeCeEEEcCCCCC
Q 008860 151 YGTEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIEGR-GKIV--DPHTVDV-D---GK--LYSARHILISVGGRP 221 (551)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~i--~~~~v~v-~---g~--~~~~d~lviAtG~~p 221 (551)
.++..+.. ...+.+.+.+++++.+. +..+ +.+.+.+ + ++ ++.||++|+|||++|
T Consensus 53 ------~~~~~~~~-----------~~~~~~~~~gv~~~~~~~v~~i~~~~~~v~~~~~~~g~~~~~~~d~lviAtG~~p 115 (447)
T 1nhp_A 53 ------KDVNSVRY-----------MTGEKMESRGVNVFSNTEITAIQPKEHQVTVKDLVSGEERVENYDKLIISPGAVP 115 (447)
T ss_dssp ------CCGGGSBS-----------CCHHHHHHTTCEEEETEEEEEEETTTTEEEEEETTTCCEEEEECSEEEECCCEEE
T ss_pred ------CCHHHhhc-----------CCHHHHHHCCCEEEECCEEEEEeCCCCEEEEEecCCCceEEEeCCEEEEcCCCCc
Confidence 01111000 01123445689987664 4445 4567776 2 43 489999999999999
Q ss_pred CCCCCCCCC--ceecc---hhhhcCC---C--CCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCC-CCCHHHHH
Q 008860 222 FIPDIPGSE--YAIDS---DAALDLP---S--KPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLR-GFDEDIRD 290 (551)
Q Consensus 222 ~~p~i~g~~--~~~~~---~~~~~~~---~--~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~-~~~~~~~~ 290 (551)
..|++||.+ .++++ ++...+. . .+++++|||+|++|+|+|..|++.|.+|+++++.+.+++ .+++++.+
T Consensus 116 ~~p~i~G~~~~~v~~~~~~~~~~~l~~~~~~~~~~~vvIiG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~ 195 (447)
T 1nhp_A 116 FELDIPGKDLDNIYLMRGRQWAIKLKQKTVDPEVNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRPLGVYLDKEFTD 195 (447)
T ss_dssp CCCCSTTTTSBSEECCCHHHHHHHHHHHHTCTTCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTTTCCHHHHH
T ss_pred CCCCCCCCCCCCeEEECCHHHHHHHHHHhhhcCCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCcccccccCCHHHHH
Confidence 999999974 35543 3332221 1 589999999999999999999999999999999999888 48999999
Q ss_pred HHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCcCCCCCCCCccccCeeecCCCCeEeCCCCC
Q 008860 291 FVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNTKNLGLEKVGVKMTKNGAIEVDEYSG 370 (551)
Q Consensus 291 ~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~ 370 (551)
.+.+.+++.||+++++++|++++.+ ++...+.+ +++++++|.||+|+|++|++++ ++.. ++++++|+|.||+++|
T Consensus 196 ~l~~~l~~~gv~i~~~~~v~~i~~~-~~v~~v~~-~~~~i~~d~vi~a~G~~p~~~~--~~~~-~~~~~~G~i~Vd~~~~ 270 (447)
T 1nhp_A 196 VLTEEMEANNITIATGETVERYEGD-GRVQKVVT-DKNAYDADLVVVAVGVRPNTAW--LKGT-LELHPNGLIKTDEYMR 270 (447)
T ss_dssp HHHHHHHTTTEEEEESCCEEEEECS-SBCCEEEE-SSCEEECSEEEECSCEEESCGG--GTTT-SCBCTTSCBCCCTTCB
T ss_pred HHHHHHHhCCCEEEcCCEEEEEEcc-CcEEEEEE-CCCEEECCEEEECcCCCCChHH--HHhh-hhhcCCCcEEECcccc
Confidence 9999999999999999999999865 33234555 4567999999999999999987 5566 7788889999999999
Q ss_pred CCCCcEEEeCcCCCC----------CCChHHHHHhHHHHHHHHcCCCCCCCCCCCccEEEecCCceEEeeCCHHHHHhcC
Q 008860 371 TAVPSIWAVGDVTDR----------INLTPVALMEGGALAKTLFQAEPTKPDYSAVPSAVFSQPPIGQVGLSEEQAIQEY 440 (551)
Q Consensus 371 t~~~~vya~GD~~~~----------~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~~~~~~~~~~~~~vGl~~~~a~~~~ 440 (551)
|+.|+|||+|||+.. +++++.|..||+++|+||+|.+..+.++...|++.|++|+++++|+++++|+..+
T Consensus 271 t~~~~Iya~GD~~~~~~~~~g~~~~~~~~~~A~~qg~~aa~~i~g~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~a~~~g 350 (447)
T 1nhp_A 271 TSEPDVFAVGDATLIKYNPADTEVNIALATNARKQGRFAVKNLEEPVKPFPGVQGSSGLAVFDYKFASTGINEVMAQKLG 350 (447)
T ss_dssp CSSTTEEECGGGSCEEEGGGTEEECCCCHHHHHHHHHHHHHTSSSCCCCCCCBCCCEEEEETTEEEEEEECCHHHHHHHT
T ss_pred CCCCCEEEeeeEEEeeccCCCCceechhHHHHHHHHHHHHHhhcCCCCCCCCccccEEEEECCeeeEEecCCHHHHHHcC
Confidence 999999999999972 4689999999999999999865444556678899999999999999999999887
Q ss_pred CCeEEEEeeccCccccccc-CCCcEEEEEEEECCCCeEEEEEEECCC-hhHHHHHHHHHHHCCCCHHHHccC-cccCCCc
Q 008860 441 GDIDVFTANFRPLKATLSG-LPDRIFMKLVLCAKTNKVLGLHMCGED-APEIVQGFAVAVKAGLTKADFDAT-VGVHPTA 517 (551)
Q Consensus 441 ~~~~~~~~~~~~~~~~~~~-~~~~~~~kl~~~~~~~~ilG~~~~g~~-~~e~i~~~~~~i~~~~~~~~l~~~-~~~~pt~ 517 (551)
.++.+.. +....++... ..+.+|+|+++++++|+|+|+|++|+. +.|+|+.++++|++++|++||.++ +++|||+
T Consensus 351 ~~~~~~~--~~~~~~~~~~~~~~~~~~k~~~~~~~~~ilG~~~~g~~~a~e~i~~~~~ai~~~~~~~~l~~~~~~~~Pt~ 428 (447)
T 1nhp_A 351 KETKAVT--VVEDYLMDFNPDKQKAWFKLVYDPETTQILGAQLMSKADLTANINAISLAIQAKMTIEDLAYADFFFQPAF 428 (447)
T ss_dssp CCCEEEE--EEEESSCTTCTTCCEEEEEEEECTTTCBEEEEEEEESSCCTTHHHHHHHHHHTTCBHHHHHTCCCCCCTTT
T ss_pred CceEEEE--EEcCCccccCCCCceEEEEEEEECCCCEEEEEEEEcCccHHHHHHHHHHHHHcCCCHHHHhhcceecCCCC
Confidence 6665543 2333344333 466789999999889999999999998 999999999999999999999997 8999999
Q ss_pred hHHHHHHHhhhhhhc
Q 008860 518 AEEFVTLRTPTRKIR 532 (551)
Q Consensus 518 ~e~~~~~~~~~~~~~ 532 (551)
+|.+..+..++.++.
T Consensus 429 ~e~~~~~~~aa~~~~ 443 (447)
T 1nhp_A 429 DKPWNIINTAALEAV 443 (447)
T ss_dssp CCSSCHHHHHHHHHH
T ss_pred CCcccHHHHHHHHHh
Confidence 999888877776654
|
| >3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.3e-55 Score=461.75 Aligned_cols=408 Identities=22% Similarity=0.294 Sum_probs=322.8
Q ss_pred CccEEEECCChHHHHHHHHHHhC--CCcEEEEccCCCCCCCCCCCCCCCeeccCCC-cchHHHHHhhhhhhHhhhccCCC
Q 008860 72 DFDLFTIGAGSGGVRASRFAANF--GASVAICELPFSTISSETTGGVGGTCVLRGC-VPKKLLVYASKFSHEFDESNGFG 148 (551)
Q Consensus 72 ~~dVvIIGgG~aGl~aA~~l~~~--G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~-~p~~~l~~~~~~~~~~~~~~~~g 148 (551)
++||+|||||+||+++|..|++. |.+|+|||+ ....++ ..| +|.. ...
T Consensus 36 ~~dvvIIG~G~aGl~aA~~l~~~~~g~~V~lie~---------~~~~~~----~~~~~~~~----~~~------------ 86 (480)
T 3cgb_A 36 SMNYVIIGGDAAGMSAAMQIVRNDENANVVTLEK---------GEIYSY----AQCGLPYV----ISG------------ 86 (480)
T ss_dssp -CEEEEECCSHHHHHHHHHHHHHCTTCEEEEECS---------SSCCSB----CGGGHHHH----HTT------------
T ss_pred cceEEEECCCHHHHHHHHHHHhhCcCCcEEEEEC---------CCCCCC----CCCCcchh----hcC------------
Confidence 46999999999999999999995 899999993 112211 111 2210 000
Q ss_pred cccCCCCCCChHHHHHHHHHHHHHHHHHHHHHH-HhCCeEEEEe-EEEEec--CCEEEE-c---CE--EEEeCeEEEcCC
Q 008860 149 WKYGTEPQHDWSTLIANKNAELQRLTGIYKNIL-INAGITLIEG-RGKIVD--PHTVDV-D---GK--LYSARHILISVG 218 (551)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~-~~~~i~--~~~v~v-~---g~--~~~~d~lviAtG 218 (551)
...++..+..+. .+.+ +..+++++.+ .+..++ .+.+.+ + ++ .+.||+||+|||
T Consensus 87 ------~~~~~~~l~~~~-----------~~~~~~~~gv~~~~~~~v~~i~~~~~~v~v~~~~~g~~~~~~~d~lviAtG 149 (480)
T 3cgb_A 87 ------AIASTEKLIARN-----------VKTFRDKYGIDAKVRHEVTKVDTEKKIVYAEHTKTKDVFEFSYDRLLIATG 149 (480)
T ss_dssp ------SSSCGGGGBSSC-----------HHHHHHTTCCEEESSEEEEEEETTTTEEEEEETTTCCEEEEECSEEEECCC
T ss_pred ------CcCCHHHhhhcC-----------HHHHHhhcCCEEEeCCEEEEEECCCCEEEEEEcCCCceEEEEcCEEEECCC
Confidence 000111111100 1122 3458998875 556665 456666 2 54 799999999999
Q ss_pred CCCCCCCCCCCC--cee---cchhhhcCCC-----CCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCCCCCHHH
Q 008860 219 GRPFIPDIPGSE--YAI---DSDAALDLPS-----KPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDI 288 (551)
Q Consensus 219 ~~p~~p~i~g~~--~~~---~~~~~~~~~~-----~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~~~~~~~ 288 (551)
++|+.|++||.+ .++ ++++...+.+ .+++++|||+|++|+|+|..|++.|.+|+++++.+.+++.+++++
T Consensus 150 ~~p~~p~i~G~~~~~v~~~~~~~~~~~l~~~~~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~ 229 (480)
T 3cgb_A 150 VRPVMPEWEGRDLQGVHLLKTIPDAERILKTLETNKVEDVTIIGGGAIGLEMAETFVELGKKVRMIERNDHIGTIYDGDM 229 (480)
T ss_dssp EEECCCCCBTTTSBTEECCSSHHHHHHHHHHHHSSCCCEEEEECCHHHHHHHHHHHHHTTCEEEEECCGGGTTSSSCHHH
T ss_pred CcccCCCCCCccCCCEEEeCCHHHHHHHHHHhhhcCCCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeCCchhhcCCHHH
Confidence 999999999874 233 3455554432 689999999999999999999999999999999999988899999
Q ss_pred HHHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCcCCCCCCCCccccCeeecCCCCeEeCCC
Q 008860 289 RDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNTKNLGLEKVGVKMTKNGAIEVDEY 368 (551)
Q Consensus 289 ~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~ 368 (551)
.+.+.+.+++.||+++++++|++++.+ ++...+.+. +.++++|.||+|+|++|++++ ++..|++++++|+|.||++
T Consensus 230 ~~~l~~~l~~~Gv~i~~~~~v~~i~~~-~~v~~v~~~-~~~i~~D~vi~a~G~~p~~~~--l~~~g~~~~~~G~I~Vd~~ 305 (480)
T 3cgb_A 230 AEYIYKEADKHHIEILTNENVKAFKGN-ERVEAVETD-KGTYKADLVLVSVGVKPNTDF--LEGTNIRTNHKGAIEVNAY 305 (480)
T ss_dssp HHHHHHHHHHTTCEEECSCCEEEEEES-SBEEEEEET-TEEEECSEEEECSCEEESCGG--GTTSCCCBCTTSCBCCCTT
T ss_pred HHHHHHHHHHcCcEEEcCCEEEEEEcC-CcEEEEEEC-CCEEEcCEEEECcCCCcChHH--HHhCCcccCCCCCEEECCC
Confidence 999999999999999999999999875 333345665 457999999999999999987 6788899998999999999
Q ss_pred CCCCCCcEEEeCcCCCC----------CCChHHHHHhHHHHHHHHcCCCCCCCCCCCccEEEecCCceEEeeCCHHHHHh
Q 008860 369 SGTAVPSIWAVGDVTDR----------INLTPVALMEGGALAKTLFQAEPTKPDYSAVPSAVFSQPPIGQVGLSEEQAIQ 438 (551)
Q Consensus 369 ~~t~~~~vya~GD~~~~----------~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~~~~~~~~~~~~~vGl~~~~a~~ 438 (551)
+||+.|+|||+|||+.. +++++.|..||+++|+||+|....+.++..+|++.|++|+++++|+++++|++
T Consensus 306 ~~ts~p~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~qg~~aa~~i~g~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~a~~ 385 (480)
T 3cgb_A 306 MQTNVQDVYAAGDCATHYHVIKEIHDHIPIGTTANKQGRLAGLNMLDKRRAFKGTLGTGIIKFMNLTLARTGLNEKEAKG 385 (480)
T ss_dssp SBCSSTTEEECGGGBCEEBTTTCSEECCCCHHHHHHHHHHHHHHHTTCCCCCCCBCCCEEEEETTEEEEEEECCHHHHHH
T ss_pred ccCCCCCEEEeeeEEEecCCCCCcceecchHHHHHHHHHHHHHHhcCCCccCCCccceeEEEECCcEEEEeCCCHHHHHH
Confidence 99999999999999952 26799999999999999998655455667789999999999999999999998
Q ss_pred cCCCeEEEEeeccCccccc-ccCCCcEEEEEEEECCCCeEEEEEEECCC-hhHHHHHHHHHHHCCCCHHHHccC-cccCC
Q 008860 439 EYGDIDVFTANFRPLKATL-SGLPDRIFMKLVLCAKTNKVLGLHMCGED-APEIVQGFAVAVKAGLTKADFDAT-VGVHP 515 (551)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~kl~~~~~~~~ilG~~~~g~~-~~e~i~~~~~~i~~~~~~~~l~~~-~~~~p 515 (551)
.+.++.+...... .++. ....+.+|+|+++|+++|+|+|++++|+. +.|+|+.++++|++++|++||.++ +++||
T Consensus 386 ~g~~~~~~~~~~~--~~~~~~~~~~~~~~kl~~~~~~~~ilG~~~vg~~~a~e~i~~~~~ai~~~~~~~~l~~~~~~~~P 463 (480)
T 3cgb_A 386 LHIPYKTVKVDST--NMAGYYPNAKPLYLKLLYRSDTKQLLGGQVIGEEGVDKRIDVIAMALFNKMSIHDLEDVDLSYAP 463 (480)
T ss_dssp TTCCEEEEEEEEE--SSCTTSTTCCEEEEEEEEETTTCBEEEEEEEESSSHHHHHHHHHHHHHTTCBGGGGGGCCCCCCT
T ss_pred cCCceEEEEEecC--CcccccCCCceEEEEEEEECCCCEEEEEEEECCccHHHHHHHHHHHHHcCCCHHHHhhcccccCC
Confidence 8767666544332 2221 12456789999999889999999999998 999999999999999999999996 68999
Q ss_pred CchHHHHHHHhhhhhh
Q 008860 516 TAAEEFVTLRTPTRKI 531 (551)
Q Consensus 516 t~~e~~~~~~~~~~~~ 531 (551)
|++|.+..+..++.++
T Consensus 464 t~~e~~~~~~~a~~~~ 479 (480)
T 3cgb_A 464 PYNSVWDPIQQAARRA 479 (480)
T ss_dssp TTCCSSCHHHHHHHHC
T ss_pred CCCCchhHHHHHHHhc
Confidence 9999988887777654
|
| >3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-54 Score=467.07 Aligned_cols=400 Identities=19% Similarity=0.275 Sum_probs=312.5
Q ss_pred CCccEEEECCChHHHHHHHHHHhC--CCcEEEEccCCCCCCCCCCCCCCCeeccCCC-cchHHHHHhhhhhhHhhhccCC
Q 008860 71 YDFDLFTIGAGSGGVRASRFAANF--GASVAICELPFSTISSETTGGVGGTCVLRGC-VPKKLLVYASKFSHEFDESNGF 147 (551)
Q Consensus 71 ~~~dVvIIGgG~aGl~aA~~l~~~--G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~-~p~~~l~~~~~~~~~~~~~~~~ 147 (551)
+++||+|||||+||++||..|++. |.+|+|||+ ....+ +..| +|. ....
T Consensus 35 ~~~~VvIIGgG~AGl~aA~~L~~~~~g~~V~vie~---------~~~~~----~~~~~lp~----~~~g----------- 86 (588)
T 3ics_A 35 GSRKIVVVGGVAGGASVAARLRRLSEEDEIIMVER---------GEYIS----FANCGLPY----YIGG----------- 86 (588)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHHCSSSEEEEECS---------SSCSS----BCGGGHHH----HHTT-----------
T ss_pred cCCCEEEECCcHHHHHHHHHHHhhCcCCCEEEEEC---------CCCcc----ccCCCCch----hhcC-----------
Confidence 357999999999999999999997 899999993 11111 0001 110 0000
Q ss_pred CcccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEe-EEEEec--CCEEEE----cCE--EEEeCeEEEcCC
Q 008860 148 GWKYGTEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIEG-RGKIVD--PHTVDV----DGK--LYSARHILISVG 218 (551)
Q Consensus 148 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~i~--~~~v~v----~g~--~~~~d~lviAtG 218 (551)
. . .....+ +......+.++.++++..+ ++..++ .+.+.+ ++. .+.||+||+|||
T Consensus 87 -~-----~-~~~~~~----------~~~~~~~~~~~~gi~v~~~~~V~~id~~~~~v~v~~~~~g~~~~~~~d~lviAtG 149 (588)
T 3ics_A 87 -V-----I-TERQKL----------LVQTVERMSKRFNLDIRVLSEVVKINKEEKTITIKNVTTNETYNEAYDVLILSPG 149 (588)
T ss_dssp -S-----S-CCGGGG----------BSSCHHHHHHHTTCEEECSEEEEEEETTTTEEEEEETTTCCEEEEECSEEEECCC
T ss_pred -c-----C-CChHHh----------hccCHHHHHHhcCcEEEECCEEEEEECCCCEEEEeecCCCCEEEEeCCEEEECCC
Confidence 0 0 000000 0011122334568888654 455554 456655 344 789999999999
Q ss_pred CCCCCCCCCCC-C--ceecchhhhcC--------CCCCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCCCCCHH
Q 008860 219 GRPFIPDIPGS-E--YAIDSDAALDL--------PSKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDED 287 (551)
Q Consensus 219 ~~p~~p~i~g~-~--~~~~~~~~~~~--------~~~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~~~~~~ 287 (551)
++|..|++||. + .+++..+.... ...+++++|||+|++|+|+|..|++.|.+|+++++.+.+++.++++
T Consensus 150 ~~p~~p~i~G~~~~~~v~~~~~~~~~~~~~~~l~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~ 229 (588)
T 3ics_A 150 AKPIVPSIPGIEEAKALFTLRNVPDTDRIKAYIDEKKPRHATVIGGGFIGVEMVENLRERGIEVTLVEMANQVMPPIDYE 229 (588)
T ss_dssp EEECCCCCTTTTTCTTEEECSSHHHHHHHHHHHHHHCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTTSCHH
T ss_pred CCCCCCCCCCcccCCCeEEeCCHHHHHHHHHHHhhcCCCeEEEECCCHHHHHHHHHHHhCCCeEEEEecCCcccccCCHH
Confidence 99999999987 3 34444433222 1357999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCcCCCCCCCCccccCeeecCCCCeEeCC
Q 008860 288 IRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNTKNLGLEKVGVKMTKNGAIEVDE 367 (551)
Q Consensus 288 ~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~ 367 (551)
+.+.+.+.+++.||+++++++|++++.++++ |.+.+|+++++|.||+|+|++|++++ ++..|++++++|+|.||+
T Consensus 230 ~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~---v~~~~g~~i~~D~Vi~a~G~~p~~~~--l~~~g~~~~~~g~i~vd~ 304 (588)
T 3ics_A 230 MAAYVHEHMKNHDVELVFEDGVDALEENGAV---VRLKSGSVIQTDMLILAIGVQPESSL--AKGAGLALGVRGTIKVNE 304 (588)
T ss_dssp HHHHHHHHHHHTTCEEECSCCEEEEEGGGTE---EEETTSCEEECSEEEECSCEEECCHH--HHHTTCCBCGGGCBCCCT
T ss_pred HHHHHHHHHHHcCCEEEECCeEEEEecCCCE---EEECCCCEEEcCEEEEccCCCCChHH--HHhcCceEcCCCCEEECC
Confidence 9999999999999999999999999865443 77889999999999999999999987 788899999999999999
Q ss_pred CCCCCCCcEEEeCcCCC-------C---CCChHHHHHhHHHHHHHHcC-CCCCCCCCCCccEEEecCCceEEeeCCHHHH
Q 008860 368 YSGTAVPSIWAVGDVTD-------R---INLTPVALMEGGALAKTLFQ-AEPTKPDYSAVPSAVFSQPPIGQVGLSEEQA 436 (551)
Q Consensus 368 ~~~t~~~~vya~GD~~~-------~---~~~~~~A~~~g~~aa~~i~g-~~~~~~~~~~~~~~~~~~~~~~~vGl~~~~a 436 (551)
++||++|+|||+|||+. . +++++.|..||+++|+||+| .+..+......+...|++|+++++|+||+||
T Consensus 305 ~~~t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~~~~~~~~~~~~a~vGlte~~a 384 (588)
T 3ics_A 305 KFQTSDPHIYAIGDAIEVKDFVTETETMIPLAWPANRQGRMLADIIHGHTDSLYKGTLGTSVAKVFDLTVATTGLNEKIL 384 (588)
T ss_dssp TSBCSSTTEEECGGGBCEEBTTTCCEECCCCHHHHHHHHHHHHHHHTTCCSSCCCCBCCCEEEEETTEEEEEEECCHHHH
T ss_pred ccccCCCCEEEeeeeeecccccCCcccccccHHHHHHHHHHHHHHhcCCCccccCCcccceEEEECCeEEEEecCCHHHH
Confidence 99999999999999994 2 47899999999999999998 5433322233344568899999999999999
Q ss_pred HhcCCCeEEEEeeccCcccc-cccCCCcEEEEEEEECCCCeEEEEEEECC-ChhHHHHHHHHHHHCCCCHHHHccCcccC
Q 008860 437 IQEYGDIDVFTANFRPLKAT-LSGLPDRIFMKLVLCAKTNKVLGLHMCGE-DAPEIVQGFAVAVKAGLTKADFDATVGVH 514 (551)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~kl~~~~~~~~ilG~~~~g~-~~~e~i~~~~~~i~~~~~~~~l~~~~~~~ 514 (551)
++++.++.+..... ..++ +..+.+.+|+|+++|+++|+|||+|++|+ .+.|+|+.+++||++|+|++||.+++++|
T Consensus 385 ~~~g~~~~~~~~~~--~~~~~~~~~~~~~~~k~i~~~~~~~ilG~~~~g~~~~~e~i~~~~~ai~~~~t~~~l~~~~~~~ 462 (588)
T 3ics_A 385 KRLNIPYEVVHVQA--NSHAGYYPNATPVLIKLIFNKDSGKIYGAQTLGRDGVDKRMDVIATAIKANLTVLDLPDLELSY 462 (588)
T ss_dssp HHTTCCCEEEEEEE--ESSCTTSTTCCEEEEEEEECTTTCBEEEEEEEESSSHHHHHHHHHHHHHTTCBTTTGGGCCCCC
T ss_pred HHcCCCeEEEEEec--CCccccCCCCceEEEEEEEECCCCeEEEEEEEcCCcHHHHHHHHHHHHHcCCCHHHhhhhhhcc
Confidence 99887776665432 2222 34567789999999999999999999998 58999999999999999999999999888
Q ss_pred -CCchHHHH
Q 008860 515 -PTAAEEFV 522 (551)
Q Consensus 515 -pt~~e~~~ 522 (551)
|++++...
T Consensus 463 ~P~~~~~~d 471 (588)
T 3ics_A 463 APPYSSAKD 471 (588)
T ss_dssp STTTCCSSC
T ss_pred CCCcccccc
Confidence 99876443
|
| >3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-54 Score=465.45 Aligned_cols=402 Identities=20% Similarity=0.274 Sum_probs=311.6
Q ss_pred ccEEEECCChHHHHHHHHHHhC--CCcEEEEccCCCCCCCCCCCCCCCeeccCCC-cchHHHHHhhhhhhHhhhccCCCc
Q 008860 73 FDLFTIGAGSGGVRASRFAANF--GASVAICELPFSTISSETTGGVGGTCVLRGC-VPKKLLVYASKFSHEFDESNGFGW 149 (551)
Q Consensus 73 ~dVvIIGgG~aGl~aA~~l~~~--G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~-~p~~~l~~~~~~~~~~~~~~~~g~ 149 (551)
+||+|||||+||+++|..|++. |.+|+|||+ ....+ ...| +|. .... . +
T Consensus 2 ~~VvIIGgG~AGl~aA~~L~~~~~~~~V~lie~---------~~~~~----~~~~~l~~----~~~~----------~-~ 53 (565)
T 3ntd_A 2 KKILIIGGVAGGASAAARARRLSETAEIIMFER---------GEYVS----FANCGLPY----HISG----------E-I 53 (565)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHCSSSEEEEECS---------SSCSS----BCGGGHHH----HHTS----------S-S
T ss_pred CcEEEECCCHHHHHHHHHHHhhCcCCCEEEEEC---------CCCcc----ccccCchH----HhcC----------C-c
Confidence 5899999999999999999996 899999993 11111 0001 111 0000 0 0
Q ss_pred ccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEE-eEEEEecC--CEEEE-c---C--EEEEeCeEEEcCCCC
Q 008860 150 KYGTEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIE-GRGKIVDP--HTVDV-D---G--KLYSARHILISVGGR 220 (551)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~i~~--~~v~v-~---g--~~~~~d~lviAtG~~ 220 (551)
.........+ ...+..+.++++.. .++..++. +.+.+ + + ..+.||+||+|||++
T Consensus 54 ~~~~~~~~~~-----------------~~~~~~~~~i~~~~~~~V~~id~~~~~v~~~~~~~g~~~~~~~d~lviAtG~~ 116 (565)
T 3ntd_A 54 AQRSALVLQT-----------------PESFKARFNVEVRVKHEVVAIDRAAKLVTVRRLLDGSEYQESYDTLLLSPGAA 116 (565)
T ss_dssp CCGGGGBCCC-----------------HHHHHHHHCCEEETTEEEEEEETTTTEEEEEETTTCCEEEEECSEEEECCCEE
T ss_pred CChHHhhccC-----------------HHHHHHhcCcEEEECCEEEEEECCCCEEEEEecCCCCeEEEECCEEEECCCCC
Confidence 0000000000 01122334888764 35666653 45555 2 3 378999999999999
Q ss_pred CCCCCCCCCC--ceecchhh---hcC-----CCCCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCCCCCHHHHH
Q 008860 221 PFIPDIPGSE--YAIDSDAA---LDL-----PSKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRD 290 (551)
Q Consensus 221 p~~p~i~g~~--~~~~~~~~---~~~-----~~~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~ 290 (551)
|+.|++||.+ .+++...+ ..+ ...+++++|||+|++|+|+|..|++.|.+|+++++.+.+++.+++++.+
T Consensus 117 p~~p~ipG~~~~~v~~~~~~~~~~~l~~~~~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~ 196 (565)
T 3ntd_A 117 PIVPPIPGVDNPLTHSLRNIPDMDRILQTIQMNNVEHATVVGGGFIGLEMMESLHHLGIKTTLLELADQVMTPVDREMAG 196 (565)
T ss_dssp ECCCCCTTCCSTTEECCSSHHHHHHHHHHHHHTTCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSCTTSCHHHHH
T ss_pred CCCCCCCCCCCCCEEEeCCHHHHHHHHHHHhhCCCCEEEEECCCHHHHHHHHHHHhcCCcEEEEEcCCccchhcCHHHHH
Confidence 9999999974 34443322 111 1357899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCcEEEcCcccEEEEEc------------------CCceEEEEECCCeEEEeeEEEEecCcCCCCCCCCccc
Q 008860 291 FVAEQMSLRGIEFHTEESPQAILKS------------------TDGSLSVKTNKGTVDGFSHVMFATGRRPNTKNLGLEK 352 (551)
Q Consensus 291 ~l~~~l~~~Gv~i~~~~~v~~i~~~------------------~~~~~~V~~~~G~~i~~d~vi~a~G~~p~~~~l~l~~ 352 (551)
.+.+.+++.||++++++.|++++.+ .++.+.+.+.+|+++++|.||+|+|++|++++ ++.
T Consensus 197 ~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~l--~~~ 274 (565)
T 3ntd_A 197 FAHQAIRDQGVDLRLGTALSEVSYQVQTHVASDAAGEDTAHQHIKGHLSLTLSNGELLETDLLIMAIGVRPETQL--ARD 274 (565)
T ss_dssp HHHHHHHHTTCEEEETCCEEEEEEECCCCCCCGGGTCCCTTCCTTCEEEEEETTSCEEEESEEEECSCEEECCHH--HHH
T ss_pred HHHHHHHHCCCEEEeCCeEEEEeccccccccccccccccccccCCCcEEEEEcCCCEEEcCEEEECcCCccchHH--HHh
Confidence 9999999999999999999999873 23336788899999999999999999999986 678
Q ss_pred cCeeecCCCCeEeCCCCCCCCCcEEEeCcCCC-------C---CCChHHHHHhHHHHHHHHcCCCCCCCCCCCccEEEec
Q 008860 353 VGVKMTKNGAIEVDEYSGTAVPSIWAVGDVTD-------R---INLTPVALMEGGALAKTLFQAEPTKPDYSAVPSAVFS 422 (551)
Q Consensus 353 ~gl~~~~~G~i~vd~~~~t~~~~vya~GD~~~-------~---~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~~~~~~~ 422 (551)
.|++++++|+|.||+++||+.|+|||+|||+. . +++++.|..||+++|+||+|+...+..+...+++.|+
T Consensus 275 ~g~~~~~~g~i~vd~~~~t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~~~~~~~ 354 (565)
T 3ntd_A 275 AGLAIGELGGIKVNAMMQTSDPAIYAVGDAVEEQDFVTGQACLVPLAGPANRQGRMAADNMFGREERYQGTQGTAICKVF 354 (565)
T ss_dssp HTCCBCTTSSBCCCTTCBCSSTTEEECGGGBCEEBTTTCCEECCCCHHHHHHHHHHHHHHHTTCCCCCCCBCCCEEEEET
T ss_pred CCcccCCCCCEEECCCcccCCCCEEEeeeeEeeccccCCceeecccHHHHHHHHHHHHHHhcCCCccCCCcccceEEEEc
Confidence 89999999999999999999999999999984 2 3689999999999999999876554444445567788
Q ss_pred CCceEEeeCCHHHHHhcCCCeEEEEeeccCccccccc-CCCcEEEEEEEECCCCeEEEEEEECCCh-hHHHHHHHHHHHC
Q 008860 423 QPPIGQVGLSEEQAIQEYGDIDVFTANFRPLKATLSG-LPDRIFMKLVLCAKTNKVLGLHMCGEDA-PEIVQGFAVAVKA 500 (551)
Q Consensus 423 ~~~~~~vGl~~~~a~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~kl~~~~~~~~ilG~~~~g~~~-~e~i~~~~~~i~~ 500 (551)
+|+++++|++|+||++.+.++.+... ....++... +.+.+|+|+++|+++|+|||+|++|+++ .|+|+.+++||++
T Consensus 355 ~~~~~~vG~~e~~a~~~g~~~~~~~~--~~~~~~~~~~~~~~~~~k~v~~~~~~~ilG~~~~g~~a~~e~i~~~~~ai~~ 432 (565)
T 3ntd_A 355 DLAVGATGKNEKQLKQAGIAFEKVYV--HTASHASYYPGAEVVSFKLLFDPVKGTIFGAQAVGKDGIDKRIDVMAVAQRA 432 (565)
T ss_dssp TEEEEEEECCHHHHHHTTCCCEEEEE--EEESSCTTSTTCCEEEEEEEECTTTCBEEEEEEEESSSHHHHHHHHHHHHHT
T ss_pred CcEEEEecCCHHHHHHcCCCeEEEEE--ecCcccCcCCCCceEEEEEEEECCCCEEEEEEEECCccHHHHHHHHHHHHHc
Confidence 99999999999999988766665443 223344333 6678999999999999999999999998 9999999999999
Q ss_pred CCCHHHHccCcc-cCCCchHHHHH
Q 008860 501 GLTKADFDATVG-VHPTAAEEFVT 523 (551)
Q Consensus 501 ~~~~~~l~~~~~-~~pt~~e~~~~ 523 (551)
|+|++||.++++ +||++++.+..
T Consensus 433 ~~~~~~l~~~~~~~~P~~~~~~~~ 456 (565)
T 3ntd_A 433 GMTVEQLQHLELSYAPPYGSAKDV 456 (565)
T ss_dssp TCBHHHHTTCCCCCCTTTCCSSCH
T ss_pred CCCHHHHhhhhhccCcccCchhhh
Confidence 999999999875 56988765443
|
| >2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.7e-47 Score=388.86 Aligned_cols=358 Identities=19% Similarity=0.228 Sum_probs=277.9
Q ss_pred CCCCccEEEECCChHHHHHHHHHHhCC--CcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhhccC
Q 008860 69 SHYDFDLFTIGAGSGGVRASRFAANFG--ASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDESNG 146 (551)
Q Consensus 69 ~~~~~dVvIIGgG~aGl~aA~~l~~~G--~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~ 146 (551)
|+.++||+|||||+||+++|..|++.| .+|+|+| .. .||.|++.++...
T Consensus 1 M~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~V~lie----------~~--------~g~~~~~~~l~~~----------- 51 (384)
T 2v3a_A 1 MSERAPLVIIGTGLAGYNLAREWRKLDGETPLLMIT----------AD--------DGRSYSKPMLSTG----------- 51 (384)
T ss_dssp ---CCCEEEECCSHHHHHHHHHHHTTCSSSCEEEEC----------SS--------CCCEECGGGGGGT-----------
T ss_pred CCCCCcEEEECChHHHHHHHHHHHhhCCCCCEEEEE----------CC--------CCCccCcccccHH-----------
Confidence 344689999999999999999999988 5699999 22 1445543322110
Q ss_pred CCcccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEe-EEEEecC--CEEEEcCEEEEeCeEEEcCCCCCCC
Q 008860 147 FGWKYGTEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIEG-RGKIVDP--HTVDVDGKLYSARHILISVGGRPFI 223 (551)
Q Consensus 147 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~i~~--~~v~v~g~~~~~d~lviAtG~~p~~ 223 (551)
+ . .......+.. .....++++.+++++.+ .+..++. +++.+++..+.||++|+|||++|..
T Consensus 52 --~--~--~~~~~~~~~~----------~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~d~lviAtG~~p~~ 115 (384)
T 2v3a_A 52 --F--S--KNKDADGLAM----------AEPGAMAEQLNARILTHTRVTGIDPGHQRIWIGEEEVRYRDLVLAWGAEPIR 115 (384)
T ss_dssp --T--T--TTCCHHHHEE----------ECHHHHHHHTTCEEECSCCCCEEEGGGTEEEETTEEEECSEEEECCCEEECC
T ss_pred --H--h--CCCCHHHhhc----------cCHHHHHHhCCcEEEeCCEEEEEECCCCEEEECCcEEECCEEEEeCCCCcCC
Confidence 0 0 0011111100 01223445678998865 4566654 7788877789999999999999999
Q ss_pred CCCCCCC--ceecchhhhcCC------CCCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCCC-CCHHHHHHHHH
Q 008860 224 PDIPGSE--YAIDSDAALDLP------SKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRG-FDEDIRDFVAE 294 (551)
Q Consensus 224 p~i~g~~--~~~~~~~~~~~~------~~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~~-~~~~~~~~l~~ 294 (551)
|++||.+ .+++.+++.++. ..+++++|||+|++|+|+|..|.+.|.+|+++++.+.+++. +++++.+.+.+
T Consensus 116 p~i~g~~~~~v~~~~~~~~~~~~~~~~~~~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~l~~ 195 (384)
T 2v3a_A 116 VPVEGDAQDALYPINDLEDYARFRQAAAGKRRVLLLGAGLIGCEFANDLSSGGYQLDVVAPCEQVMPGLLHPAAAKAVQA 195 (384)
T ss_dssp CCCBSTTTTCEEECSSHHHHHHHHHHHTTCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTTTSCHHHHHHHHH
T ss_pred CCCCCcCcCCEEEECCHHHHHHHHHhhccCCeEEEECCCHHHHHHHHHHHhCCCeEEEEecCcchhhcccCHHHHHHHHH
Confidence 9999864 466655544321 23899999999999999999999999999999999998887 58999999999
Q ss_pred HHHhcCcEEEcCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCcCCCCCCCCccccCeeecCCCCeEeCCCCCCCCC
Q 008860 295 QMSLRGIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNTKNLGLEKVGVKMTKNGAIEVDEYSGTAVP 374 (551)
Q Consensus 295 ~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~t~~~ 374 (551)
.+++.||+++++++|++++.++++ +.|.+.+|+++++|.||+|+|++|++++ ++..+++++ +| |.||+++||+.|
T Consensus 196 ~l~~~gv~i~~~~~v~~i~~~~~~-~~v~~~~g~~i~~d~vv~a~G~~p~~~l--~~~~g~~~~-~g-i~vd~~~~t~~~ 270 (384)
T 2v3a_A 196 GLEGLGVRFHLGPVLASLKKAGEG-LEAHLSDGEVIPCDLVVSAVGLRPRTEL--AFAAGLAVN-RG-IVVDRSLRTSHA 270 (384)
T ss_dssp HHHTTTCEEEESCCEEEEEEETTE-EEEEETTSCEEEESEEEECSCEEECCHH--HHHTTCCBS-SS-EEECTTCBCSST
T ss_pred HHHHcCCEEEeCCEEEEEEecCCE-EEEEECCCCEEECCEEEECcCCCcCHHH--HHHCCCCCC-CC-EEECCCCCCCCC
Confidence 999999999999999999876655 7788999989999999999999999986 678899887 57 999999999999
Q ss_pred cEEEeCcCCCC----CCChHHHHHhHHHHHHHHcCCCCCCCCCCCccEEEecC-CceEEeeCCHHHHHhcCCCeEEEEee
Q 008860 375 SIWAVGDVTDR----INLTPVALMEGGALAKTLFQAEPTKPDYSAVPSAVFSQ-PPIGQVGLSEEQAIQEYGDIDVFTAN 449 (551)
Q Consensus 375 ~vya~GD~~~~----~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~~~~~~~~-~~~~~vGl~~~~a~~~~~~~~~~~~~ 449 (551)
+|||+|||+.. .+++..|..||+++|+||+|.+ ...+|..+|+++|+. +++.++|+++.+ . ..
T Consensus 271 ~IyA~GD~~~~~~~~~~~~~~a~~~g~~~a~~i~g~~-~~~~~~~~p~~~~~~~~~~~~~g~~~~~----~-~~------ 338 (384)
T 2v3a_A 271 NIYALGDCAEVDGLNLLYVMPLMACARALAQTLAGNP-SQVAYGPMPVTVKTPACPLVVSPPPRGM----D-GQ------ 338 (384)
T ss_dssp TEEECGGGEEETTBCCCSHHHHHHHHHHHHHHHTTCC-CCCCCCCCCEEECCTTSCEEEECCCTTC----C-CE------
T ss_pred CEEEeeeeeeECCCCcchHHHHHHHHHHHHHHhcCCC-ccCCCCCcceEEEECCeeEEEecCCCCC----C-ce------
Confidence 99999999852 2467789999999999999865 456778899999986 589999977531 0 00
Q ss_pred ccCcccccccCCCcEEEEEEEECCCCeEEEEEEECCChhHHHHHHH
Q 008860 450 FRPLKATLSGLPDRIFMKLVLCAKTNKVLGLHMCGEDAPEIVQGFA 495 (551)
Q Consensus 450 ~~~~~~~~~~~~~~~~~kl~~~~~~~~ilG~~~~g~~~~e~i~~~~ 495 (551)
.....++.+|.|++++ ++|+|+|++++|+.|.|+++.+.
T Consensus 339 ------~~~~~~~~g~~~~~~~-~~~~i~G~~~~g~~a~e~~~~~~ 377 (384)
T 2v3a_A 339 ------WLVEGSGTDLKVLCRD-TAGRVIGYALTGAAVNEKLALNK 377 (384)
T ss_dssp ------EEEEEETTEEEEEEEC-TTSCEEEEEEEGGGGGGHHHHHT
T ss_pred ------EEEEecCCcEEEEEEc-cCCEEEEEEEECcchHHHHHHHH
Confidence 0011234579999887 68999999999999999887654
|
| >3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-47 Score=390.09 Aligned_cols=358 Identities=19% Similarity=0.262 Sum_probs=277.4
Q ss_pred CccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhhccCCCccc
Q 008860 72 DFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDESNGFGWKY 151 (551)
Q Consensus 72 ~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~~ 151 (551)
+.+|||||||+||++||..|++.+.+|+|||+ ....+. ..+.-++.+ ...
T Consensus 9 ~~~~vIvGgG~AGl~aA~~L~~~~~~itlie~---------~~~~~y----~~~~l~~~l--~g~--------------- 58 (385)
T 3klj_A 9 STKILILGAGPAGFSAAKAALGKCDDITMINS---------EKYLPY----YRPRLNEII--AKN--------------- 58 (385)
T ss_dssp BCSEEEECCSHHHHHHHHHHTTTCSCEEEECS---------SSSCCB----CGGGHHHHH--HSC---------------
T ss_pred CCCEEEEcCcHHHHHHHHHHhCCCCEEEEEEC---------CCCCCc----ccChhhHHH--cCC---------------
Confidence 46899999999999999999888999999993 111111 001101110 000
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEe-EEEEecC--CEEEE-cCEEEEeCeEEEcCCCCCCCCCCC
Q 008860 152 GTEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIEG-RGKIVDP--HTVDV-DGKLYSARHILISVGGRPFIPDIP 227 (551)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~i~~--~~v~v-~g~~~~~d~lviAtG~~p~~p~i~ 227 (551)
.+..++ .....+++++.+++++.+ ++..++. +.+.+ +++++.||+||+|||++|+.|++|
T Consensus 59 -----~~~~~l-----------~~~~~~~~~~~~i~~~~~~~V~~id~~~~~v~~~~g~~~~yd~lvlAtG~~p~~p~i~ 122 (385)
T 3klj_A 59 -----KSIDDI-----------LIKKNDWYEKNNIKVITSEFATSIDPNNKLVTLKSGEKIKYEKLIIASGSIANKIKVP 122 (385)
T ss_dssp -----CCGGGT-----------BSSCHHHHHHTTCEEECSCCEEEEETTTTEEEETTSCEEECSEEEECCCEEECCCCCT
T ss_pred -----CCHHHc-----------cCCCHHHHHHCCCEEEeCCEEEEEECCCCEEEECCCCEEECCEEEEecCCCcCCCCCC
Confidence 000000 001123345679999887 5777764 56777 678999999999999999999999
Q ss_pred CCCceec---chhhhcCCC---CCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCCC-CCHHHHHHHHHHHHhcC
Q 008860 228 GSEYAID---SDAALDLPS---KPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRG-FDEDIRDFVAEQMSLRG 300 (551)
Q Consensus 228 g~~~~~~---~~~~~~~~~---~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~~-~~~~~~~~l~~~l~~~G 300 (551)
|.+.+++ .++...+.. .+++++|||+|++|+|+|..|++.|.+|+++++.+.+++. +++++.+.+.+.+++.|
T Consensus 123 G~~~v~~~~~~~d~~~l~~~l~~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtvv~~~~~~l~~~~~~~~~~~~~~~l~~~g 202 (385)
T 3klj_A 123 HADEIFSLYSYDDALKIKDECKNKGKAFIIGGGILGIELAQAIIDSGTPASIGIILEYPLERQLDRDGGLFLKDKLDRLG 202 (385)
T ss_dssp TCSCEECCSSHHHHHHHHHHHHHHSCEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSSCTTTSCHHHHHHHHHHHHTTT
T ss_pred CCCCeEEeCCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHHHHhCCCeEEEEEcCCccchhhcCHHHHHHHHHHHHhCC
Confidence 9875443 455544432 2689999999999999999999999999999999999987 89999999999999999
Q ss_pred cEEEcCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCcCCCCCCCCccccCeeecCCCCeEeCCCCCCCCCcEEEeC
Q 008860 301 IEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNTKNLGLEKVGVKMTKNGAIEVDEYSGTAVPSIWAVG 380 (551)
Q Consensus 301 v~i~~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~t~~~~vya~G 380 (551)
|++++++.++++ |+++++|.||+|+|++|++++ ++.++++.+ +| |.||+++||+.|+|||+|
T Consensus 203 V~~~~~~~v~~i--------------g~~~~~D~vv~a~G~~p~~~~--~~~~gl~~~-~g-i~vd~~~~t~~~~IyA~G 264 (385)
T 3klj_A 203 IKIYTNSNFEEM--------------GDLIRSSCVITAVGVKPNLDF--IKDTEIASK-RG-ILVNDHMETSIKDIYACG 264 (385)
T ss_dssp CEEECSCCGGGC--------------HHHHHHSEEEECCCEEECCGG--GTTSCCCBS-SS-EEECTTCBCSSTTEEECG
T ss_pred CEEEeCCEEEEc--------------CeEEecCeEEECcCcccChhh--hhhcCCCcC-CC-EEECCCcccCCCCEEEEE
Confidence 999999988776 456899999999999999988 677888876 34 999999999999999999
Q ss_pred cCCC----CCCChHHHHHhHHHHHHHHcCCCCCCCCCCC-ccE--EEecCCceEEeeCCHHHHHhcCCCeEEEEeeccCc
Q 008860 381 DVTD----RINLTPVALMEGGALAKTLFQAEPTKPDYSA-VPS--AVFSQPPIGQVGLSEEQAIQEYGDIDVFTANFRPL 453 (551)
Q Consensus 381 D~~~----~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~-~~~--~~~~~~~~~~vGl~~~~a~~~~~~~~~~~~~~~~~ 453 (551)
||+. .++++..|..||++||.||+|.... |.. .|+ ..+.+++++++|+++.+. .+. +..
T Consensus 265 D~a~~~~~~~~~~~~A~~qg~~aa~~i~g~~~~---~~~~~~~~~~~~~~~~~~~~G~~~~~~----~~~-~~~------ 330 (385)
T 3klj_A 265 DVAEFYGKNPGLINIANKQGEVAGLNACGEDAS---YSEIIPSPILKVSGISIISCGDIENNK----PSK-VFR------ 330 (385)
T ss_dssp GGEEETTBCCCCHHHHHHHHHHHHHHHTTCCCC---CCCCCCCCEEEETTEEEEEESCCTTCC----CSE-EEE------
T ss_pred eeEecCCCcccHHHHHHHHHHHHHHHhcCCCcC---CCCCCCcEEEEeCCCcEEEEcCCCCCC----CeE-EEE------
Confidence 9997 3678999999999999999986543 332 344 444688999999997542 111 111
Q ss_pred ccccccCCCcEEEEEEEECCCCeEEEEEEECCChhHHHHHHHHHHHCCCCHHHHccCcccCCCchHHHHH
Q 008860 454 KATLSGLPDRIFMKLVLCAKTNKVLGLHMCGEDAPEIVQGFAVAVKAGLTKADFDATVGVHPTAAEEFVT 523 (551)
Q Consensus 454 ~~~~~~~~~~~~~kl~~~~~~~~ilG~~~~g~~~~e~i~~~~~~i~~~~~~~~l~~~~~~~pt~~e~~~~ 523 (551)
+..+..|.|+++ ++|+|+|++++|+.+.++ .+..+|+++.++++| ||++|.+.+
T Consensus 331 -----~~~~~~~~~~~~--~~~~l~g~~~~g~~~~~~--~~~~~i~~~~~~~~~-------~~~~E~~~~ 384 (385)
T 3klj_A 331 -----STQEDKYIVCML--KENKIDAAAVIGDVSLGT--KLKKAIDSSKSFDNI-------SSLDAILNN 384 (385)
T ss_dssp -----EECSSCEEEEEE--ETTEEEEEEEESCHHHHH--HHHHHHHTTCBCSCC-------SCHHHHHTT
T ss_pred -----ECCCCeEEEEEE--ECCEEEEEEEECCcHHHH--HHHHHHHcCCCcccc-------cCHHHHHhh
Confidence 123557999999 479999999999976554 688999999999998 999998754
|
| >1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-46 Score=382.75 Aligned_cols=331 Identities=19% Similarity=0.265 Sum_probs=251.9
Q ss_pred ccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhhccCCCcccC
Q 008860 73 FDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDESNGFGWKYG 152 (551)
Q Consensus 73 ~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~~~ 152 (551)
-||+|||||+||++||..|++.| +|+|||+ ...++ ...+..++. +.
T Consensus 9 ~~vvIIGgG~AGl~aA~~l~~~g-~V~lie~----------~~~~~---~~~~~l~~~----------~~---------- 54 (367)
T 1xhc_A 9 SKVVIVGNGPGGFELAKQLSQTY-EVTVIDK----------EPVPY---YSKPMLSHY----------IA---------- 54 (367)
T ss_dssp CEEEEECCSHHHHHHHHHHTTTS-EEEEECS----------SSSCC---CCSTTHHHH----------HT----------
T ss_pred CcEEEECCcHHHHHHHHHHhhcC-CEEEEEC----------CCCCc---cccchhHHH----------Hh----------
Confidence 48999999999999999999999 9999993 22111 000111110 00
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEe-EEEEecCC--EEEEcCEEEEeCeEEEcCCCCCCCCCCCCC
Q 008860 153 TEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIEG-RGKIVDPH--TVDVDGKLYSARHILISVGGRPFIPDIPGS 229 (551)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~i~~~--~v~v~g~~~~~d~lviAtG~~p~~p~i~g~ 229 (551)
...++..+..+ ..+++++.+++++.+ .+..+++. .+..+++++.||+||||||++|+.|++||.
T Consensus 55 --g~~~~~~~~~~-----------~~~~~~~~~v~~~~g~~v~~id~~~~~V~~~g~~~~~d~lViATGs~p~~p~i~G~ 121 (367)
T 1xhc_A 55 --GFIPRNRLFPY-----------SLDWYRKRGIEIRLAEEAKLIDRGRKVVITEKGEVPYDTLVLATGARAREPQIKGK 121 (367)
T ss_dssp --TSSCGGGGCSS-----------CHHHHHHHTEEEECSCCEEEEETTTTEEEESSCEEECSEEEECCCEEECCCCSBTG
T ss_pred --CCCCHHHhccC-----------CHHHHHhCCcEEEECCEEEEEECCCCEEEECCcEEECCEEEECCCCCCCCCCCCCc
Confidence 00112211111 112344568999988 47777754 444467789999999999999999999996
Q ss_pred Cceec---chhhhcCCC---CCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCCCCCHHHHHHHHHHHHhcCcEE
Q 008860 230 EYAID---SDAALDLPS---KPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRDFVAEQMSLRGIEF 303 (551)
Q Consensus 230 ~~~~~---~~~~~~~~~---~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i 303 (551)
+.+++ .+++..+.+ .+++++|||+|++|+|+|..|+++|.+|+++++.+.+++ +++++.+.+.+.+++.||++
T Consensus 122 ~~v~~~~~~~~~~~l~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~-~~~~~~~~l~~~l~~~gV~i 200 (367)
T 1xhc_A 122 EYLLTLRTIFDADRIKESIENSGEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAMFLG-LDEELSNMIKDMLEETGVKF 200 (367)
T ss_dssp GGEECCCSHHHHHHHHHHHHHHSEEEEEECSHHHHHHHHHHHHTTCEEEEECSSSCCTT-CCHHHHHHHHHHHHHTTEEE
T ss_pred CCEEEEcCHHHHHHHHHHhhcCCcEEEECCCHHHHHHHHHHHhCCCEEEEEeCCCeecc-CCHHHHHHHHHHHHHCCCEE
Confidence 55554 344444322 258999999999999999999999999999999999988 99999999999999999999
Q ss_pred EcCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCcCCCCCCCCccccCeeecCCCCeEeCCCCCCCCCcEEEeCcCC
Q 008860 304 HTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNTKNLGLEKVGVKMTKNGAIEVDEYSGTAVPSIWAVGDVT 383 (551)
Q Consensus 304 ~~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~t~~~~vya~GD~~ 383 (551)
+++++|++++ .+ .|.+.+|+ +++|.|++|+|++|++++ ++..+++.+ +| |.||+++||+.|+|||+|||+
T Consensus 201 ~~~~~v~~i~--~~---~v~~~~g~-i~~D~vi~a~G~~p~~~l--l~~~gl~~~-~g-i~Vd~~~~t~~~~IyA~GD~a 270 (367)
T 1xhc_A 201 FLNSELLEAN--EE---GVLTNSGF-IEGKVKICAIGIVPNVDL--ARRSGIHTG-RG-ILIDDNFRTSAKDVYAIGDCA 270 (367)
T ss_dssp ECSCCEEEEC--SS---EEEETTEE-EECSCEEEECCEEECCHH--HHHTTCCBS-SS-EECCTTSBCSSTTEEECGGGE
T ss_pred EcCCEEEEEE--ee---EEEECCCE-EEcCEEEECcCCCcCHHH--HHhCCCCCC-CC-EEECCCcccCCCCEEEeEeee
Confidence 9999999996 22 37788888 999999999999999986 678888876 44 999999999999999999998
Q ss_pred CC----CCChHHHHHhHHHHHHHHcCCCCCCCCCCCccE--EEecCCceEEeeCCHHHHHhcCCCeEEEEeeccCccccc
Q 008860 384 DR----INLTPVALMEGGALAKTLFQAEPTKPDYSAVPS--AVFSQPPIGQVGLSEEQAIQEYGDIDVFTANFRPLKATL 457 (551)
Q Consensus 384 ~~----~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~~~--~~~~~~~~~~vGl~~~~a~~~~~~~~~~~~~~~~~~~~~ 457 (551)
.. +++++.|..||+++|+||+|.... .++ ..|+ ..|++|+++++|++++++. .+
T Consensus 271 ~~~~~~~~~~~~A~~qg~~aa~~i~g~~~~-~~~-~~~~~~~~~~~~~~~~vG~~~~~~~------~~------------ 330 (367)
T 1xhc_A 271 EYSGIIAGTAKAAMEQARVLADILKGEPRR-YNF-KFRSTVFKFGKLQIAIIGNTKGEGK------WI------------ 330 (367)
T ss_dssp EBTTBCCCSHHHHHHHHHHHHHHHTTCCCC-CCS-SCCEEEEEETTEEEEEEECCSSCEE------EE------------
T ss_pred ecCCCCccHHHHHHHHHHHHHHHhcCCCcc-CCC-CCCceEEEECCceEEEECCCCCCCc------cc------------
Confidence 52 478999999999999999986432 222 2343 5799999999999987421 00
Q ss_pred ccCCCcEEEEEEEECCCCeEEEEEEECCChh
Q 008860 458 SGLPDRIFMKLVLCAKTNKVLGLHMCGEDAP 488 (551)
Q Consensus 458 ~~~~~~~~~kl~~~~~~~~ilG~~~~g~~~~ 488 (551)
.+|+|++++ +++|+|++++|+.+.
T Consensus 331 -----~~~~k~~~~--~~~ilG~~~~g~~~~ 354 (367)
T 1xhc_A 331 -----EDNTKVFYE--NGKIIGAVVFNDIRK 354 (367)
T ss_dssp -----ETTEEEEC-------CEEEEESCHHH
T ss_pred -----ceEEEEEEE--CCEEEEEEEECChHH
Confidence 468999996 599999999998643
|
| >1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-43 Score=370.24 Aligned_cols=378 Identities=19% Similarity=0.199 Sum_probs=286.0
Q ss_pred CCCccEEEECCChHHHHHHHHHHhCCC--cEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhhccCC
Q 008860 70 HYDFDLFTIGAGSGGVRASRFAANFGA--SVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDESNGF 147 (551)
Q Consensus 70 ~~~~dVvIIGgG~aGl~aA~~l~~~G~--~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~ 147 (551)
++.+||+|||||+||+++|..|++.|. +|+|||+ ....+. ..+..++.++ .
T Consensus 2 ~~~~~vvIIGgG~aGl~aA~~l~~~g~~~~V~lie~---------~~~~~~----~~~~l~~~~~---------~----- 54 (431)
T 1q1r_A 2 NANDNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGD---------ATVIPH----HLPPLSKAYL---------A----- 54 (431)
T ss_dssp CCSCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECS---------CCSCCB----CSGGGGTTTT---------T-----
T ss_pred CCCCcEEEEcCHHHHHHHHHHHHccCcCCCEEEEEC---------CCCCCC----cCCCCcHHHh---------C-----
Confidence 346899999999999999999999998 7999993 111100 0000000000 0
Q ss_pred CcccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEeE-EEEecC--CEEEE-cCEEEEeCeEEEcCCCCCCC
Q 008860 148 GWKYGTEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIEGR-GKIVDP--HTVDV-DGKLYSARHILISVGGRPFI 223 (551)
Q Consensus 148 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~i~~--~~v~v-~g~~~~~d~lviAtG~~p~~ 223 (551)
+ ...+..+. ....+.+.+.+++++.+. +..++. +.+.+ +++.+.||+||+|||++|+.
T Consensus 55 -----~--~~~~~~~~-----------~~~~~~~~~~gv~~~~~~~v~~i~~~~~~v~~~~g~~~~~d~lviAtG~~p~~ 116 (431)
T 1q1r_A 55 -----G--KATAESLY-----------LRTPDAYAAQNIQLLGGTQVTAINRDRQQVILSDGRALDYDRLVLATGGRPRP 116 (431)
T ss_dssp -----T--CSCSGGGB-----------SSCHHHHHHTTEEEECSCCEEEEETTTTEEEETTSCEEECSEEEECCCEEECC
T ss_pred -----C--CCChHHhc-----------ccCHHHHHhCCCEEEeCCEEEEEECCCCEEEECCCCEEECCEEEEcCCCCccC
Confidence 0 00000000 001123456699998874 566664 56777 67789999999999999999
Q ss_pred CCCCCCC--c---e---ecchhhhcCC---CCCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCCC-CCHHHHHH
Q 008860 224 PDIPGSE--Y---A---IDSDAALDLP---SKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRG-FDEDIRDF 291 (551)
Q Consensus 224 p~i~g~~--~---~---~~~~~~~~~~---~~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~~-~~~~~~~~ 291 (551)
|++||.+ . + .+.+++..+. ..+++++|||+|++|+|+|..|.+.|.+|+++++.+.+++. +++++.+.
T Consensus 117 ~~i~G~~~~~~~~v~~~~~~~d~~~l~~~l~~~~~vvViGgG~~g~E~A~~l~~~G~~Vtlv~~~~~~l~~~~~~~~~~~ 196 (431)
T 1q1r_A 117 LPVASGAVGKANNFRYLRTLEDAECIRRQLIADNRLVVIGGGYIGLEVAATAIKANMHVTLLDTAARVLERVTAPPVSAF 196 (431)
T ss_dssp CGGGTTHHHHSTTEEESSSHHHHHHHHHTCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTTTSCHHHHHH
T ss_pred CCCCCcccCCCceEEEECCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHHHHhCCCEEEEEEeCCccccchhhHHHHHH
Confidence 9999864 2 3 3455554332 34799999999999999999999999999999999998886 89999999
Q ss_pred HHHHHHhcCcEEEcCcccEEEEE--cCCceEEEEECCCeEEEeeEEEEecCcCCCCCCCCccccCeeecCCCCeEeCCCC
Q 008860 292 VAEQMSLRGIEFHTEESPQAILK--STDGSLSVKTNKGTVDGFSHVMFATGRRPNTKNLGLEKVGVKMTKNGAIEVDEYS 369 (551)
Q Consensus 292 l~~~l~~~Gv~i~~~~~v~~i~~--~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~ 369 (551)
+.+.+++.||+++++++|++++. ++++...|.+.+|+++++|.||+|+|++|++++ ++.++++++ +| |.||+++
T Consensus 197 l~~~l~~~GV~i~~~~~v~~i~~~~~~~~v~~v~~~~G~~i~~D~Vv~a~G~~p~~~l--~~~~gl~~~-~g-i~Vd~~~ 272 (431)
T 1q1r_A 197 YEHLHREAGVDIRTGTQVCGFEMSTDQQKVTAVLCEDGTRLPADLVIAGIGLIPNCEL--ASAAGLQVD-NG-IVINEHM 272 (431)
T ss_dssp HHHHHHHHTCEEECSCCEEEEEECTTTCCEEEEEETTSCEEECSEEEECCCEEECCHH--HHHTTCCBS-SS-EECCTTS
T ss_pred HHHHHHhCCeEEEeCCEEEEEEeccCCCcEEEEEeCCCCEEEcCEEEECCCCCcCcch--hhccCCCCC-CC-EEECCCc
Confidence 99999999999999999999987 444534788999999999999999999999987 678888886 44 9999999
Q ss_pred CCCCCcEEEeCcCCCCC----------CChHHHHHhHHHHHHHHcCCCCCCCCCCCccEEE--ecCCceEEeeCCHHHHH
Q 008860 370 GTAVPSIWAVGDVTDRI----------NLTPVALMEGGALAKTLFQAEPTKPDYSAVPSAV--FSQPPIGQVGLSEEQAI 437 (551)
Q Consensus 370 ~t~~~~vya~GD~~~~~----------~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~~~~~--~~~~~~~~vGl~~~~a~ 437 (551)
||+.|+|||+|||+..+ .++..|..||+++|.||+|... .|..+|+.. +.+.++.++|+++.
T Consensus 273 ~ts~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~qg~~aa~~i~g~~~---~~~~~p~~~~~~~~~~~~~~G~~~~--- 346 (431)
T 1q1r_A 273 QTSDPLIMAVGDCARFHSQLYDRWVRIESVPNALEQARKIAAILCGKVP---RDEAAPWFWSDQYEIGLKMVGLSEG--- 346 (431)
T ss_dssp BCSSTTEEECGGGEEEEETTTTEEEECCSHHHHHHHHHHHHHHHTTCCC---CCCCCCEEEEEETTEEEEEEECCTT---
T ss_pred ccCCCCEEEEEeEEEEccccCCceEeeCHHHHHHHHHHHHHHHhcCCCC---CCCCCCeEEEEECCceEEEEeCCCC---
Confidence 99999999999999853 2578899999999999998653 456677652 23468999998763
Q ss_pred hcCCCeEEEEeeccCcccccccCCCcEEEEEEEECCCCeEEEEEEECCChhHHHHHHHHHHHCCCCHHHHccCcccCCCc
Q 008860 438 QEYGDIDVFTANFRPLKATLSGLPDRIFMKLVLCAKTNKVLGLHMCGEDAPEIVQGFAVAVKAGLTKADFDATVGVHPTA 517 (551)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~~~~~~ilG~~~~g~~~~e~i~~~~~~i~~~~~~~~l~~~~~~~pt~ 517 (551)
+..+.+ .. ......|++++. ++|+|+|++++|+.+.+++....++++.+++.++|.+..+++..+
T Consensus 347 --~~~~~~-~~----------~~~~~~~~~~~~--~~~~l~G~~~~g~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~ 411 (431)
T 1q1r_A 347 --YDRIIV-RG----------SLAQPDFSVFYL--QGDRVLAVDTVNRPVEFNQSKQIITDRLPVEPNLLGDESVPLKEI 411 (431)
T ss_dssp --CSEEEE-EE----------ETTTTEEEEEEE--ETTEEEEEEEESCHHHHHHHHHHHHTTCCCCHHHHTCTTSCHHHH
T ss_pred --CCEEEE-Ec----------cCCCCeEEEEEE--eCCEEEEEEEECChHHHHHHHHHHHCCCCCCHHHhhCCCCCHHHH
Confidence 111211 11 123456777654 479999999999998899988888899999999998877665544
|
| >2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-42 Score=358.62 Aligned_cols=360 Identities=20% Similarity=0.265 Sum_probs=272.0
Q ss_pred CCccEEEECCChHHHHHHHHHHhCCC--cEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhhccCCC
Q 008860 71 YDFDLFTIGAGSGGVRASRFAANFGA--SVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDESNGFG 148 (551)
Q Consensus 71 ~~~dVvIIGgG~aGl~aA~~l~~~G~--~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g 148 (551)
+++||+|||||+||+++|..|++.|. +|+|||+ ...++ +..|..++.++.... .+ ..
T Consensus 6 ~~~~vvIIG~G~aGl~aA~~l~~~g~~~~V~lie~---------~~~~~----~~~~~~~~~~~~~~~-~~------~~- 64 (408)
T 2gqw_A 6 LKAPVVVLGAGLASVSFVAELRQAGYQGLITVVGD---------EAERP----YDRPPLSKDFMAHGD-AE------KI- 64 (408)
T ss_dssp CCSSEEEECCSHHHHHHHHHHHHHTCCSCEEEEES---------SCSCC----BCSGGGGTHHHHHCC-GG------GS-
T ss_pred CCCcEEEECChHHHHHHHHHHHccCCCCeEEEEEC---------CCCCc----ccCCCCCHHHhCCCc-hh------hh-
Confidence 35899999999999999999999887 5999993 11111 111111111111000 00 00
Q ss_pred cccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEeE-EEEecC--CEEEE-cCEEEEeCeEEEcCCCCCCCC
Q 008860 149 WKYGTEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIEGR-GKIVDP--HTVDV-DGKLYSARHILISVGGRPFIP 224 (551)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~i~~--~~v~v-~g~~~~~d~lviAtG~~p~~p 224 (551)
. +. .+.+.+++++.++ +..++. +++.+ +++.+.||+||+|||++|..|
T Consensus 65 -------~--------------------~~-~~~~~~v~~~~~~~v~~i~~~~~~v~~~~g~~~~~d~lviAtG~~~~~~ 116 (408)
T 2gqw_A 65 -------R--------------------LD-CKRAPEVEWLLGVTAQSFDPQAHTVALSDGRTLPYGTLVLATGAAPRAL 116 (408)
T ss_dssp -------B--------------------CC-CTTSCSCEEEETCCEEEEETTTTEEEETTSCEEECSEEEECCCEEECCC
T ss_pred -------h--------------------HH-HHHHCCCEEEcCCEEEEEECCCCEEEECCCCEEECCEEEECCCCCCCCC
Confidence 0 00 2345589999985 777774 67777 677899999999999999999
Q ss_pred CC-CCCC-ce---ecchhhhcCC---CCCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCCC-CCHHHHHHHHHH
Q 008860 225 DI-PGSE-YA---IDSDAALDLP---SKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRG-FDEDIRDFVAEQ 295 (551)
Q Consensus 225 ~i-~g~~-~~---~~~~~~~~~~---~~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~~-~~~~~~~~l~~~ 295 (551)
++ ||.+ .+ .+.++...+. ..+++++|||+|++|+|+|..|++.|.+|+++++.+.+++. +++++.+.+.+.
T Consensus 117 ~i~~G~~~~v~~~~~~~~~~~l~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~ 196 (408)
T 2gqw_A 117 PTLQGATMPVHTLRTLEDARRIQAGLRPQSRLLIVGGGVIGLELAATARTAGVHVSLVETQPRLMSRAAPATLADFVARY 196 (408)
T ss_dssp GGGTTCSSCEEECCSHHHHHHHHTTCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTTTSCHHHHHHHHHH
T ss_pred CccCCCCCcEEEECCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHHHHhCCCEEEEEEeCCcccccccCHHHHHHHHHH
Confidence 98 8874 33 3555554432 24789999999999999999999999999999999999885 899999999999
Q ss_pred HHhcCcEEEcCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCcCCCCCCCCccccCeeecCCCCeEeCCCCCCCCCc
Q 008860 296 MSLRGIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNTKNLGLEKVGVKMTKNGAIEVDEYSGTAVPS 375 (551)
Q Consensus 296 l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~t~~~~ 375 (551)
+++.||+++++++|++++ + + .|++.+|+++++|.||+|+|++|++++ ++..+++++ +| |.||+++||+.|+
T Consensus 197 l~~~GV~i~~~~~v~~i~-~-~---~v~~~~g~~i~~D~vi~a~G~~p~~~l--~~~~gl~~~-~g-i~Vd~~~~t~~~~ 267 (408)
T 2gqw_A 197 HAAQGVDLRFERSVTGSV-D-G---VVLLDDGTRIAADMVVVGIGVLANDAL--ARAAGLACD-DG-IFVDAYGRTTCPD 267 (408)
T ss_dssp HHHTTCEEEESCCEEEEE-T-T---EEEETTSCEEECSEEEECSCEEECCHH--HHHHTCCBS-SS-EECCTTCBCSSTT
T ss_pred HHHcCcEEEeCCEEEEEE-C-C---EEEECCCCEEEcCEEEECcCCCccHHH--HHhCCCCCC-CC-EEECCCCccCCCC
Confidence 999999999999999998 3 2 477889989999999999999999987 677888876 45 9999999999999
Q ss_pred EEEeCcCCCCC----------CChHHHHHhHHHHHHHHcCCCCCCCCCCCccEEE--ecCCceEEeeCCHHHHHhcCCCe
Q 008860 376 IWAVGDVTDRI----------NLTPVALMEGGALAKTLFQAEPTKPDYSAVPSAV--FSQPPIGQVGLSEEQAIQEYGDI 443 (551)
Q Consensus 376 vya~GD~~~~~----------~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~~~~~--~~~~~~~~vGl~~~~a~~~~~~~ 443 (551)
|||+|||+..+ .++..|..||+++|.||+|... .+|..+|+.+ +.+++++++|+ +. ..+.
T Consensus 268 IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~--~~~~~~p~~~~~~~~~~~~~~G~-~~-----~~~~ 339 (408)
T 2gqw_A 268 VYALGDVTRQRNPLSGRFERIETWSNAQNQGIAVARHLVDPTA--PGYAELPWYWSDQGALRIQVAGL-AS-----GDEE 339 (408)
T ss_dssp EEECGGGEEEEETTTTEEECCCCHHHHHHHHHHHHHHHHCTTS--CCCCCCCEEEEEETTEEEEEEEC-SC-----CSEE
T ss_pred EEEEEEEEEecCccCCceeeccHHHHHHHHHHHHHHHhcCCCC--CcCCCCCeEEEEECCceEEEECC-CC-----CCEE
Confidence 99999999853 3678999999999999998653 1566677653 33579999998 21 1111
Q ss_pred EEEEeeccCcccccccCCCcEEEEEEEECCCCeEEEEEEECCChhHHHHHHHHHHHCCCC--HHHHcc
Q 008860 444 DVFTANFRPLKATLSGLPDRIFMKLVLCAKTNKVLGLHMCGEDAPEIVQGFAVAVKAGLT--KADFDA 509 (551)
Q Consensus 444 ~~~~~~~~~~~~~~~~~~~~~~~kl~~~~~~~~ilG~~~~g~~~~e~i~~~~~~i~~~~~--~~~l~~ 509 (551)
+.... ......+|.+++++ +|+|+|++++|+.+ .+..+..+|+++.+ ..+|.+
T Consensus 340 -~~~~~--------~~~~~~~~~~~~~~--~~~l~G~~~~g~~~--~~~~~~~~i~~~~~~~~~~l~~ 394 (408)
T 2gqw_A 340 -IVRGE--------VSLDAPKFTLIELQ--KGRIVGATCVNNAR--DFAPLRRLLAVGAKPDRAALAD 394 (408)
T ss_dssp -EEESC--------CCSSSCCEEEEEEE--TTEEEEEEEESCHH--HHHHHHHHHHTTCCCCHHHHHC
T ss_pred -EEEcc--------CCCCCCeEEEEEEe--CCEEEEEEEECChH--HHHHHHHHHHCCCCCChHHhcC
Confidence 11100 00114568888774 79999999999875 35788999999984 455544
|
| >3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-42 Score=356.79 Aligned_cols=366 Identities=22% Similarity=0.288 Sum_probs=273.3
Q ss_pred CCccEEEECCChHHHHHHHHHHhCCCc--EEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhhccCCC
Q 008860 71 YDFDLFTIGAGSGGVRASRFAANFGAS--VAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDESNGFG 148 (551)
Q Consensus 71 ~~~dVvIIGgG~aGl~aA~~l~~~G~~--V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g 148 (551)
+++||||||||+||+++|..|++.|++ |+|||+ ....+... .| +. ..+
T Consensus 8 ~~~~vvIIGaG~aGl~aA~~L~~~g~~~~V~lie~---------~~~~~y~~-----~~---------l~------~~~- 57 (415)
T 3lxd_A 8 ERADVVIVGAGHGGAQAAIALRQNGFEGRVLVIGR---------EPEIPYER-----PP---------LS------KEY- 57 (415)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHHTTCCSCEEEEES---------SSSCCBCS-----GG---------GG------TTT-
T ss_pred CCCcEEEECChHHHHHHHHHHHccCcCCCEEEEec---------CCCCCcCc-----cc---------CC------HHH-
Confidence 468999999999999999999999987 999993 11111000 00 00 000
Q ss_pred cccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEe-EEEEecC--CEEEE-cCEEEEeCeEEEcCCCCCCCC
Q 008860 149 WKYGTEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIEG-RGKIVDP--HTVDV-DGKLYSARHILISVGGRPFIP 224 (551)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~i~~--~~v~v-~g~~~~~d~lviAtG~~p~~p 224 (551)
+ .+ ......+. .....++.+.+++++.+ ++..++. +.+.+ +++.+.||++|+|||++|+.|
T Consensus 58 ~--~~--~~~~~~~~-----------~~~~~~~~~~~i~~~~~~~v~~id~~~~~v~~~~g~~~~~d~lvlAtG~~~~~~ 122 (415)
T 3lxd_A 58 L--AR--EKTFERIC-----------IRPAQFWEDKAVEMKLGAEVVSLDPAAHTVKLGDGSAIEYGKLIWATGGDPRRL 122 (415)
T ss_dssp T--TT--SSCSGGGB-----------SSCHHHHHHTTEEEEETCCEEEEETTTTEEEETTSCEEEEEEEEECCCEECCCC
T ss_pred H--cC--CCCHHHhc-----------cCCHHHHHHCCcEEEeCCEEEEEECCCCEEEECCCCEEEeeEEEEccCCccCCC
Confidence 0 00 00000000 00112345669999998 6777765 46666 678999999999999999999
Q ss_pred CCCCCC--cee---cchhhhcCC---CC-CCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCCC-CCHHHHHHHHH
Q 008860 225 DIPGSE--YAI---DSDAALDLP---SK-PEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRG-FDEDIRDFVAE 294 (551)
Q Consensus 225 ~i~g~~--~~~---~~~~~~~~~---~~-~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~~-~~~~~~~~l~~ 294 (551)
++||.+ .++ +.++...+. .. +++++|||+|++|+|+|..+.+.|.+|+++++.+.+++. +++++.+.+.+
T Consensus 123 ~i~g~~~~~v~~~~~~~d~~~l~~~~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~l~~~~~~~~~~~l~~ 202 (415)
T 3lxd_A 123 SCVGADLAGVHAVRTKEDADRLMAELDAGAKNAVVIGGGYIGLEAAAVLTKFGVNVTLLEALPRVLARVAGEALSEFYQA 202 (415)
T ss_dssp BTTSSCCBTEECCCSHHHHHHHHHHHHTTCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTTTSCHHHHHHHHH
T ss_pred CCCCccccCEEEEcCHHHHHHHHHHhhhcCCeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCchhhhhcCHHHHHHHHH
Confidence 999864 333 444444332 12 789999999999999999999999999999999999886 89999999999
Q ss_pred HHHhcCcEEEcCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCcCCCCCCCCccccCeeecCCCCeEeCCCCCCCCC
Q 008860 295 QMSLRGIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNTKNLGLEKVGVKMTKNGAIEVDEYSGTAVP 374 (551)
Q Consensus 295 ~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~t~~~ 374 (551)
.+++.||++++++.|++++.++++...|.+.+|++++||.||+|+|.+|++++ ++.++++++ +| |.||+++||+.|
T Consensus 203 ~l~~~GV~i~~~~~v~~i~~~~~~v~~v~l~dG~~i~aD~Vv~a~G~~p~~~l--~~~~gl~~~-~g-i~vd~~~~t~~~ 278 (415)
T 3lxd_A 203 EHRAHGVDLRTGAAMDCIEGDGTKVTGVRMQDGSVIPADIVIVGIGIVPCVGA--LISAGASGG-NG-VDVDEFCRTSLT 278 (415)
T ss_dssp HHHHTTCEEEETCCEEEEEESSSBEEEEEESSSCEEECSEEEECSCCEESCHH--HHHTTCCCS-SS-EECCTTCBCSST
T ss_pred HHHhCCCEEEECCEEEEEEecCCcEEEEEeCCCCEEEcCEEEECCCCccChHH--HHhCCCCcC-CC-EEECCCCCcCCC
Confidence 99999999999999999998766645799999999999999999999999987 678888877 44 999999999999
Q ss_pred cEEEeCcCCCCCC-----------ChHHHHHhHHHHHHHHcCCCCCCCCCCCccE--EEecCCceEEeeCCHHHHHhcCC
Q 008860 375 SIWAVGDVTDRIN-----------LTPVALMEGGALAKTLFQAEPTKPDYSAVPS--AVFSQPPIGQVGLSEEQAIQEYG 441 (551)
Q Consensus 375 ~vya~GD~~~~~~-----------~~~~A~~~g~~aa~~i~g~~~~~~~~~~~~~--~~~~~~~~~~vGl~~~~a~~~~~ 441 (551)
+|||+|||+..+. ++..|..||+++|+||+|... .|..+|+ .-+.+..+.++|+++. +.
T Consensus 279 ~iyA~GD~a~~~~~~~~g~~~~~~~~~~A~~qg~~aa~~i~g~~~---~~~~~p~~~~~~~~~~~~~~G~~~~-----~~ 350 (415)
T 3lxd_A 279 DVYAIGDCAAHANDFADGAVIRLESVQNANDMATAAAKDICGAPV---PYKATPWFWSNQYDLKLQTVGLSTG-----HD 350 (415)
T ss_dssp TEEECGGGEEEECGGGTTCEECCCSHHHHHHHHHHHHHHHTTCCC---CCCCCCEEEEEETTEEEEEEECCTT-----CS
T ss_pred CEEEEEeeeeecCcccCCcceeechHHHHHHHHHHHHHHhcCCCC---CCCCCCeeEeeeCCcEEEEEeCCCC-----CC
Confidence 9999999997542 478999999999999998653 4666675 3444678999998742 11
Q ss_pred CeEEEEeeccCcccccccCCCcEEEEEEEECCCCeEEEEEEECCChhHHHHHHHHHHHCCC--CHHHHc
Q 008860 442 DIDVFTANFRPLKATLSGLPDRIFMKLVLCAKTNKVLGLHMCGEDAPEIVQGFAVAVKAGL--TKADFD 508 (551)
Q Consensus 442 ~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~~~~~~ilG~~~~g~~~~e~i~~~~~~i~~~~--~~~~l~ 508 (551)
++ +... +.....|.++++ ++|+|+|+..+|... ....+..+|..+. +.++|.
T Consensus 351 ~~-~~~~----------~~~~~~~~~~~~--~~~~~~g~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~ 404 (415)
T 3lxd_A 351 NA-VLRG----------DPATRSFSVVYL--KGGKVVALDCVNMVK--DYVQGKKLVEARAQIAPEQLA 404 (415)
T ss_dssp EE-EEEE----------EGGGTEEEEEEE--ETTEEEEEEEESCHH--HHHHHHHHHHHTCCCCHHHHT
T ss_pred EE-EEEe----------cCCCCeEEEEEE--ECCEEEEEEEECChH--HHHHHHHHHHCCCCCCHHHhc
Confidence 11 1111 123456999998 479999999999853 2334555666654 445554
|
| >3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-41 Score=350.14 Aligned_cols=362 Identities=18% Similarity=0.196 Sum_probs=269.1
Q ss_pred ccEEEECCChHHHHHHHHHHhCCCc--EEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhhccCCCcc
Q 008860 73 FDLFTIGAGSGGVRASRFAANFGAS--VAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDESNGFGWK 150 (551)
Q Consensus 73 ~dVvIIGgG~aGl~aA~~l~~~G~~--V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~ 150 (551)
+||+|||||+||+++|..|++.|++ |+|||+ ....+.. ...++...+ ... ..
T Consensus 3 ~~vvIIGaG~AGl~aA~~L~~~g~~~~V~li~~---------~~~~~y~---~~~l~~~~~----------~g~----~~ 56 (410)
T 3ef6_A 3 THVAIIGNGVGGFTTAQALRAEGFEGRISLIGD---------EPHLPYD---RPSLSKAVL----------DGS----LE 56 (410)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCSEEEEEEC---------SSSSSBC---SGGGGTHHH----------HTS----SS
T ss_pred CCEEEEcccHHHHHHHHHHHccCcCCeEEEEEC---------CCCCCcC---CccccHHHh----------CCC----CC
Confidence 5899999999999999999999987 999993 1111100 000000000 000 00
Q ss_pred cCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEe-EEEEecC--CEEEE-cCEEEEeCeEEEcCCCCCCCCCC
Q 008860 151 YGTEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIEG-RGKIVDP--HTVDV-DGKLYSARHILISVGGRPFIPDI 226 (551)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~i~~--~~v~v-~g~~~~~d~lviAtG~~p~~p~i 226 (551)
.. .. ... ..++.+.+++++.+ ++..++. +.+.+ +++.+.||+||+|||++|+.|++
T Consensus 57 ~~-~~-~~~------------------~~~~~~~~i~~~~~~~v~~id~~~~~v~~~~g~~~~~d~lvlAtG~~p~~~~i 116 (410)
T 3ef6_A 57 RP-PI-LAE------------------ADWYGEARIDMLTGPEVTALDVQTRTISLDDGTTLSADAIVIATGSRARTMAL 116 (410)
T ss_dssp SC-CB-SSC------------------TTHHHHTTCEEEESCCEEEEETTTTEEEETTSCEEECSEEEECCCEEECCCCC
T ss_pred HH-Hh-cCC------------------HHHHHHCCCEEEeCCEEEEEECCCCEEEECCCCEEECCEEEEccCCcccCCCC
Confidence 00 00 000 12344568999998 7887775 46766 67789999999999999999999
Q ss_pred CCCC--cee---cchhhhcCC---CCCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCCC-CCHHHHHHHHHHHH
Q 008860 227 PGSE--YAI---DSDAALDLP---SKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRG-FDEDIRDFVAEQMS 297 (551)
Q Consensus 227 ~g~~--~~~---~~~~~~~~~---~~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~~-~~~~~~~~l~~~l~ 297 (551)
||.+ .++ +.++...+. ..+++++|||+|++|+|+|..+.+.|.+|+++++.+.+++. +++++.+.+.+.++
T Consensus 117 pG~~~~~v~~~~~~~d~~~l~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtvv~~~~~~l~~~~~~~~~~~l~~~l~ 196 (410)
T 3ef6_A 117 PGSQLPGVVTLRTYGDVQVLRDSWTSATRLLIVGGGLIGCEVATTARKLGLSVTILEAGDELLVRVLGRRIGAWLRGLLT 196 (410)
T ss_dssp TTTTSTTEECCCSHHHHHHHHHHCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSHHHHCHHHHHHHHHHHH
T ss_pred CCccccceEEeccHHHHHHHHHHhccCCeEEEECCCHHHHHHHHHHHhCCCeEEEEecCCccchhhcCHHHHHHHHHHHH
Confidence 9864 233 445444332 34789999999999999999999999999999999998875 89999999999999
Q ss_pred hcCcEEEcCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCcCCCCCCCCccccCeeecCCCCeEeCCCCCCCCCcEE
Q 008860 298 LRGIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNTKNLGLEKVGVKMTKNGAIEVDEYSGTAVPSIW 377 (551)
Q Consensus 298 ~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~t~~~~vy 377 (551)
+.||++++++.|++++.++ ....|++.+|+++++|.||+|+|++|++++ ++.+|++++ + +|.||++++|+.|+||
T Consensus 197 ~~GV~i~~~~~v~~i~~~~-~~~~v~~~dg~~i~aD~Vv~a~G~~p~~~l--~~~~gl~~~-~-gi~vd~~~~t~~~~Iy 271 (410)
T 3ef6_A 197 ELGVQVELGTGVVGFSGEG-QLEQVMASDGRSFVADSALICVGAEPADQL--ARQAGLACD-R-GVIVDHCGATLAKGVF 271 (410)
T ss_dssp HHTCEEECSCCEEEEECSS-SCCEEEETTSCEEECSEEEECSCEEECCHH--HHHTTCCBS-S-SEECCTTSBCSSTTEE
T ss_pred HCCCEEEeCCEEEEEeccC-cEEEEEECCCCEEEcCEEEEeeCCeecHHH--HHhCCCccC-C-eEEEccCeeECCCCEE
Confidence 9999999999999998755 335789999999999999999999999987 788899887 4 4999999999999999
Q ss_pred EeCcCCCCC---------CChHHHHHhHHHHHHHHcCCCCCCCCCCCccEE--EecCCceEEeeCCHHHHHhcCCCeEEE
Q 008860 378 AVGDVTDRI---------NLTPVALMEGGALAKTLFQAEPTKPDYSAVPSA--VFSQPPIGQVGLSEEQAIQEYGDIDVF 446 (551)
Q Consensus 378 a~GD~~~~~---------~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~~~~--~~~~~~~~~vGl~~~~a~~~~~~~~~~ 446 (551)
|+|||+..+ +++..|..||+++|+||+|.. ..|..+|+. .+.+..+.++|+++.. +-.+.
T Consensus 272 A~GD~a~~~~~~g~~~~~~~~~~A~~qg~~aa~~i~g~~---~~~~~~p~~~~~~~~~~~~~~G~~~~~------~~~~~ 342 (410)
T 3ef6_A 272 AVGDVASWPLRAGGRRSLETYMNAQRQAAAVAAAILGKN---VSAPQLPVSWTEIAGHRMQMAGDIEGP------GDFVS 342 (410)
T ss_dssp ECGGGEEEEBTTSSEECCCCHHHHHHHHHHHHHHHTTCC---CCCCBCCEEEEEETTEEEEEESCSSSS------SEEEE
T ss_pred EEEcceeccCCCCCeeeechHHHHHHHHHHHHHHHcCCC---CCCCCCCeeEEEECCceEEEEcCCCCC------CEEEE
Confidence 999999753 358899999999999999865 345666753 3446788999987531 11111
Q ss_pred EeeccCcccccccCCCcEEEEEEEECCCCeEEEEEEECCChhHHHHHHHHHHHCCC--CHHHHc
Q 008860 447 TANFRPLKATLSGLPDRIFMKLVLCAKTNKVLGLHMCGEDAPEIVQGFAVAVKAGL--TKADFD 508 (551)
Q Consensus 447 ~~~~~~~~~~~~~~~~~~~~kl~~~~~~~~ilG~~~~g~~~~e~i~~~~~~i~~~~--~~~~l~ 508 (551)
.. +.....|.++++ ++|+|+|++++|.... ...+..+|+++. +.++|.
T Consensus 343 ~~----------~~~~~~~~~~~~--~~~~l~g~~~~~~~~~--~~~~~~~i~~~~~~~~~~l~ 392 (410)
T 3ef6_A 343 RG----------MPGSGAALLFRL--QERRIQAVVAVDAPRD--FALATRLVEARAAIEPARLA 392 (410)
T ss_dssp ES----------CTTSSSEEEEEE--ETTEEEEEEEESCHHH--HHHHHHHHHHTCBCCHHHHH
T ss_pred Ee----------eCCCCeEEEEEE--ECCEEEEEEEECChHH--HHHHHHHHhCCCCCCHHHhc
Confidence 10 123345888877 5799999999998532 334555566554 555554
|
| >3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.8e-41 Score=346.62 Aligned_cols=364 Identities=20% Similarity=0.226 Sum_probs=271.5
Q ss_pred ccEEEECCChHHHHHHHHHHhCCC--cEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhhccCCCcc
Q 008860 73 FDLFTIGAGSGGVRASRFAANFGA--SVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDESNGFGWK 150 (551)
Q Consensus 73 ~dVvIIGgG~aGl~aA~~l~~~G~--~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~ 150 (551)
+||+|||||+||+++|..|++.|+ +|+|||+ ....+.. ..|- .. .+......
T Consensus 2 k~vvIIGaG~aGl~aA~~L~~~g~~~~V~lie~---------~~~~~y~-----~~~l---------~~---~~l~~~~~ 55 (404)
T 3fg2_P 2 DTVLIAGAGHAGFQVAVSLRQAKYPGRIALIND---------EKHLPYQ-----RPPL---------SK---AYLKSGGD 55 (404)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCCSCEEEECC---------SSSSSBC-----SGGG---------GT---GGGGSCCC
T ss_pred CCEEEEcChHHHHHHHHHHHhhCcCCCEEEEeC---------CCCCCCC-----CccC---------CH---HHHCCCCC
Confidence 589999999999999999999998 8999993 1111100 0000 00 00000000
Q ss_pred cCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEeEEEEecC--CEEEE-cCEEEEeCeEEEcCCCCCCCCCCC
Q 008860 151 YGTEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIEGRGKIVDP--HTVDV-DGKLYSARHILISVGGRPFIPDIP 227 (551)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~i~~--~~v~v-~g~~~~~d~lviAtG~~p~~p~i~ 227 (551)
.. ..... ....+.+.+++++..++..++. +.+.+ +++.+.||+||+|||++|+.|++|
T Consensus 56 ~~-~~~~~------------------~~~~~~~~~i~~~~~~v~~id~~~~~v~~~~g~~~~~d~lvlAtG~~p~~~~i~ 116 (404)
T 3fg2_P 56 PN-SLMFR------------------PEKFFQDQAIELISDRMVSIDREGRKLLLASGTAIEYGHLVLATGARNRMLDVP 116 (404)
T ss_dssp TT-SSBSS------------------CHHHHHHTTEEEECCCEEEEETTTTEEEESSSCEEECSEEEECCCEEECCCCST
T ss_pred HH-HccCC------------------CHHHHHhCCCEEEEEEEEEEECCCCEEEECCCCEEECCEEEEeeCCCccCCCCC
Confidence 00 00000 1123445689988877777764 46666 678999999999999999999999
Q ss_pred CCC--cee---cchhhhcC---CCCCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCCC-CCHHHHHHHHHHHHh
Q 008860 228 GSE--YAI---DSDAALDL---PSKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRG-FDEDIRDFVAEQMSL 298 (551)
Q Consensus 228 g~~--~~~---~~~~~~~~---~~~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~~-~~~~~~~~l~~~l~~ 298 (551)
|.+ .++ +.++...+ ...+++++|||+|++|+|+|..+.+.|.+|+++++.+.+++. +++++.+.+.+.+++
T Consensus 117 g~~~~~v~~~~~~~d~~~l~~~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~ 196 (404)
T 3fg2_P 117 NASLPDVLYLRTLDESEVLRQRMPDKKHVVVIGAGFIGLEFAATARAKGLEVDVVELAPRVMARVVTPEISSYFHDRHSG 196 (404)
T ss_dssp TTTSTTEECCSSHHHHHHHHHHGGGCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTTTSCHHHHHHHHHHHHH
T ss_pred CCCCCcEEEECCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHHHHhCCCEEEEEeCCCcchhhccCHHHHHHHHHHHHh
Confidence 864 233 34443332 224789999999999999999999999999999999998876 899999999999999
Q ss_pred cCcEEEcCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCcCCCCCCCCccccCeeecCCCCeEeCCCCCCCCCcEEE
Q 008860 299 RGIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNTKNLGLEKVGVKMTKNGAIEVDEYSGTAVPSIWA 378 (551)
Q Consensus 299 ~Gv~i~~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~t~~~~vya 378 (551)
.||+++++++|++++.+++....|.+.+|+++++|.||+|+|.+|++++ ++.++++++ +| |.||+++||+.|+|||
T Consensus 197 ~GV~i~~~~~v~~i~~~~~~v~~V~~~dG~~i~aD~Vv~a~G~~p~~~l--~~~~gl~~~-~G-i~vd~~~~t~~~~iya 272 (404)
T 3fg2_P 197 AGIRMHYGVRATEIAAEGDRVTGVVLSDGNTLPCDLVVVGVGVIPNVEI--AAAAGLPTA-AG-IIVDQQLLTSDPHISA 272 (404)
T ss_dssp TTCEEECSCCEEEEEEETTEEEEEEETTSCEEECSEEEECCCEEECCHH--HHHTTCCBS-SS-EEECTTSBCSSTTEEE
T ss_pred CCcEEEECCEEEEEEecCCcEEEEEeCCCCEEEcCEEEECcCCccCHHH--HHhCCCCCC-CC-EEECCCcccCCCCEEE
Confidence 9999999999999988766555789999999999999999999999987 678888887 45 9999999999999999
Q ss_pred eCcCCCCC----------CChHHHHHhHHHHHHHHcCCCCCCCCCCCccE--EEecCCceEEeeCCHHHHHhcCCCeEEE
Q 008860 379 VGDVTDRI----------NLTPVALMEGGALAKTLFQAEPTKPDYSAVPS--AVFSQPPIGQVGLSEEQAIQEYGDIDVF 446 (551)
Q Consensus 379 ~GD~~~~~----------~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~~~--~~~~~~~~~~vGl~~~~a~~~~~~~~~~ 446 (551)
+|||+..+ .++..|..||+++|+||+|... .|..+|+ +-+.+..+.++|+... + +-.+.
T Consensus 273 ~GD~a~~~~~~~g~~~~~~~~~~A~~qg~~aa~~i~g~~~---~~~~~p~~~~~~~~~~~~~~G~~~~-----~-~~~~~ 343 (404)
T 3fg2_P 273 IGDCALFESVRFGETMRVESVQNATDQARCVAARLTGDAK---PYDGYPWFWSDQGDDKLQIVGLTAG-----F-DQVVI 343 (404)
T ss_dssp CGGGEEEEETTTTEEECCCSHHHHHHHHHHHHHHTTTCCC---CCCCCCEEEEEETTEEEEEEECCTT-----C-CEEEE
T ss_pred eecceeecCccCCceeeehHHHHHHHHHHHHHHHhCCCCC---CCCCCCceEeEECCcEEEEEeCCCC-----C-CEEEE
Confidence 99999853 2578999999999999998653 4666665 3444678899998742 1 11121
Q ss_pred EeeccCcccccccCCCcEEEEEEEECCCCeEEEEEEECCChhHHHHHHHHHHHCCCC--HHHHc
Q 008860 447 TANFRPLKATLSGLPDRIFMKLVLCAKTNKVLGLHMCGEDAPEIVQGFAVAVKAGLT--KADFD 508 (551)
Q Consensus 447 ~~~~~~~~~~~~~~~~~~~~kl~~~~~~~~ilG~~~~g~~~~e~i~~~~~~i~~~~~--~~~l~ 508 (551)
.. +.....|.++++ ++|+|+|+.++|... ....+..+|+.+.. .++|.
T Consensus 344 ~~----------~~~~~~~~~~~~--~~~~~~g~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~ 393 (404)
T 3fg2_P 344 RG----------SVAERSFSAFCY--KAGKLIGIESVNRAA--DHVFGRKILPLDKSVTPEQAA 393 (404)
T ss_dssp EE----------ETTTTEEEEEEE--ETTEEEEEEEESCHH--HHHHHHHHTTTTCCCCHHHHH
T ss_pred Ee----------cCCCCcEEEEEE--ECCEEEEEEEeCCHH--HHHHHHHHHHcCCCCCHHHhc
Confidence 11 234567999998 479999999999853 34456667777654 44443
|
| >4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-39 Score=321.43 Aligned_cols=283 Identities=20% Similarity=0.255 Sum_probs=210.5
Q ss_pred CCccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhhccCCCcc
Q 008860 71 YDFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDESNGFGWK 150 (551)
Q Consensus 71 ~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~ 150 (551)
.+|||+||||||||++||.+|++.|++|+||| ++.+||+|.+.+|+|.. +.
T Consensus 5 ~~yDvvIIG~GpAGl~aA~~l~~~g~~V~liE----------~~~~gG~~~~~~~i~~~---------------p~---- 55 (312)
T 4gcm_A 5 IDFDIAIIGAGPAGMTAAVYASRANLKTVMIE----------RGIPGGQMANTEEVENF---------------PG---- 55 (312)
T ss_dssp CSEEEEEECCSHHHHHHHHHHHHTTCCEEEEE----------SSCTTGGGGGCSCBCCS---------------TT----
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEe----------cCCCCCeeecccccCCc---------------CC----
Confidence 36999999999999999999999999999999 67899999999998731 11
Q ss_pred cCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEeEE-EEe--cCCE-EEEcCEEEEeCeEEEcCCCCCCCCCC
Q 008860 151 YGTEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIEGRG-KIV--DPHT-VDVDGKLYSARHILISVGGRPFIPDI 226 (551)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~i--~~~~-v~v~g~~~~~d~lviAtG~~p~~p~i 226 (551)
.......++..+.. ....+.+..+..+.. ... .... +..+++++.||++|||||++|+.|++
T Consensus 56 ---~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~liiAtGs~~~~~~i 121 (312)
T 4gcm_A 56 ---FEMITGPDLSTKMF-----------EHAKKFGAVYQYGDIKSVEDKGEYKVINFGNKELTAKAVIIATGAEYKKIGV 121 (312)
T ss_dssp ---CSSBCHHHHHHHHH-----------HHHHHTTCEEEECCCCEEEECSSCEEEECSSCEEEEEEEEECCCEEECCCCC
T ss_pred ---ccccchHHHHHHHH-----------HHHhhccccccceeeeeeeeeecceeeccCCeEEEeceeEEcccCccCcCCC
Confidence 11223333322221 223344555554421 111 1222 22378899999999999999999999
Q ss_pred CCCCc-----eecchhhhcCCCCCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCCCCCHHHHHHHHHHHHhcCc
Q 008860 227 PGSEY-----AIDSDAALDLPSKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRDFVAEQMSLRGI 301 (551)
Q Consensus 227 ~g~~~-----~~~~~~~~~~~~~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~Gv 301 (551)
||.+. +............+++++|||+|++|+|+|..|+++|.+||++++.+++++.. ....+.+++.++
T Consensus 122 pG~~~~~~~~v~~~~~~~~~~~~~k~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~~~~~-----~~~~~~~~~~~~ 196 (312)
T 4gcm_A 122 PGEQELGGRGVSYCAVCDGAFFKNKRLFVIGGGDSAVEEGTFLTKFADKVTIVHRRDELRAQR-----ILQDRAFKNDKI 196 (312)
T ss_dssp TTTTTTBTTTEESCHHHHGGGGTTCEEEEECCSHHHHHHHHHHTTTCSEEEEECSSSSCCSCH-----HHHHHHHHCTTE
T ss_pred CChhhhCCccEEeeeccCccccCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEecccccCcch-----hHHHHHHHhcCc
Confidence 99753 22222222222347899999999999999999999999999999999876531 223456777889
Q ss_pred EEEcCcccEEEEEcCCce--EEEE-E--CCCeEEEeeEEEEecCcCCCCCCCCccccCeeecCCCCeEeCCCCCCCCCcE
Q 008860 302 EFHTEESPQAILKSTDGS--LSVK-T--NKGTVDGFSHVMFATGRRPNTKNLGLEKVGVKMTKNGAIEVDEYSGTAVPSI 376 (551)
Q Consensus 302 ~i~~~~~v~~i~~~~~~~--~~V~-~--~~G~~i~~d~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~t~~~~v 376 (551)
.......+..+...+... .... . .++..+++|.|++++|..|+..+ ++..++. +++|+|.||+++|||+|||
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~~~g~~~~~~~--~~~~g~~-~~~G~I~vd~~~~Ts~pgI 273 (312)
T 4gcm_A 197 DFIWSHTLKSINEKDGKVGSVTLTSTKDGSEETHEADGVFIYIGMKPLTAP--FKDLGIT-NDVGYIVTKDDMTTSVPGI 273 (312)
T ss_dssp EEECSEEEEEEEEETTEEEEEEEEETTTCCEEEEECSEEEECSCEEESCGG--GGGGTCB-CTTSCBCCCTTSBCSSTTE
T ss_pred ceeeecceeeeeccccccccceeeeecCCceeEEeeeeEEeecCCCcCchh--HHhccee-cCCCeEeeCCCCccCCCCE
Confidence 988887777766554321 1111 1 23457899999999999999987 6677775 5678999999999999999
Q ss_pred EEeCcCCCC-CCChHHHHHhHHHHHHHHc
Q 008860 377 WAVGDVTDR-INLTPVALMEGGALAKTLF 404 (551)
Q Consensus 377 ya~GD~~~~-~~~~~~A~~~g~~aa~~i~ 404 (551)
||+|||++. +.+++.|+.||++||.||.
T Consensus 274 yA~GDv~~~~~~~~~~A~~~G~~AA~~i~ 302 (312)
T 4gcm_A 274 FAAGDVRDKGLRQIVTATGDGSIAAQSAA 302 (312)
T ss_dssp EECSTTBSCSCCSHHHHHHHHHHHHHHHH
T ss_pred EEEeecCCCcchHHHHHHHHHHHHHHHHH
Confidence 999999974 5789999999999999985
|
| >4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-39 Score=321.06 Aligned_cols=290 Identities=22% Similarity=0.244 Sum_probs=215.2
Q ss_pred CCCCccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhhccCCC
Q 008860 69 SHYDFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDESNGFG 148 (551)
Q Consensus 69 ~~~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g 148 (551)
|++.|||+||||||||++||.+|++.|++|+||| +...||.|.+ ||+|++.++ .+++.|
T Consensus 1 M~~~yDvvIIG~GpAGl~AA~~la~~g~~v~liE----------~~~~gg~~~~-G~~~~~~~i---------~~~~g~- 59 (314)
T 4a5l_A 1 MSNIHDVVIIGSGPAAHTAAIYLGRSSLKPVMYE----------GFMAGGVAAG-GQLTTTTII---------ENFPGF- 59 (314)
T ss_dssp -CCCEEEEEECCSHHHHHHHHHHHHTTCCCEEEC----------CSSGGGCCTT-CGGGGSSEE---------CCSTTC-
T ss_pred CCCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEe----------cCCCCCcccC-CCcCChHHh---------hhccCC-
Confidence 5667999999999999999999999999999999 6778899886 888864321 122211
Q ss_pred cccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEeEEEEecC----CEEEE-cCEEEEeCeEEEcCCCCCCC
Q 008860 149 WKYGTEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIEGRGKIVDP----HTVDV-DGKLYSARHILISVGGRPFI 223 (551)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~i~~----~~v~v-~g~~~~~d~lviAtG~~p~~ 223 (551)
...++..++..+ ......+.++++....+..... ..+.. ++.++.||+||||||++|+.
T Consensus 60 -----~~~i~~~~l~~~-----------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~liiATG~~~~~ 123 (314)
T 4a5l_A 60 -----PNGIDGNELMMN-----------MRTQSEKYGTTIITETIDHVDFSTQPFKLFTEEGKEVLTKSVIIATGATAKR 123 (314)
T ss_dssp -----TTCEEHHHHHHH-----------HHHHHHHTTCEEECCCEEEEECSSSSEEEEETTCCEEEEEEEEECCCEEECC
T ss_pred -----cccCCHHHHHHH-----------HHHHHhhcCcEEEEeEEEEeecCCCceEEEECCCeEEEEeEEEEcccccccc
Confidence 112233433332 2234455677777665544322 23333 67789999999999999999
Q ss_pred CCCCCCCc-----eecchhhhcCC--CCCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCCCCCHHHHHHHHHHH
Q 008860 224 PDIPGSEY-----AIDSDAALDLP--SKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRDFVAEQM 296 (551)
Q Consensus 224 p~i~g~~~-----~~~~~~~~~~~--~~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l 296 (551)
|++||.+. +.......... ..+++++|||+|++|+|+|..|+++|.+|+++++.+.... .+ ....+.+
T Consensus 124 ~~ipG~~~~~~~~~~~~~~~~~~~~~~~~~~vvViGgG~ig~e~A~~l~~~G~~Vt~v~~~~~~~~--~~---~~~~~~~ 198 (314)
T 4a5l_A 124 MHVPGEDKYWQNGVSACAICDGAVPIFRNKVLMVVGGGDAAMEEALHLTKYGSKVIILHRRDAFRA--SK---TMQERVL 198 (314)
T ss_dssp CCCTTHHHHBTTTEESCHHHHTTSGGGTTSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSCCS--CH---HHHHHHH
T ss_pred cCCCccccccccceeeehhhhhhhhhcCCCeEEEECCChHHHHHHHHHHHhCCeeeeecccccccc--cc---hhhhhhh
Confidence 99999642 22333222222 2478999999999999999999999999999998776433 22 2334556
Q ss_pred HhcCcEEEcCcccEEEEEcCCceEEEEE-----CCCeEEEeeEEEEecCcCCCCCCCCccccCeeecCCCCeEeCCCCCC
Q 008860 297 SLRGIEFHTEESPQAILKSTDGSLSVKT-----NKGTVDGFSHVMFATGRRPNTKNLGLEKVGVKMTKNGAIEVDEYSGT 371 (551)
Q Consensus 297 ~~~Gv~i~~~~~v~~i~~~~~~~~~V~~-----~~G~~i~~d~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~t 371 (551)
...+++.+..+.+.++...++....+.+ .+++++++|.|++|+|+.||++++. ..+.++++|.+ ||+++||
T Consensus 199 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~d~vi~a~G~~pn~~~l~---~~~~~~~~G~i-v~~~~~T 274 (314)
T 4a5l_A 199 NHPKIEVIWNSELVELEGDGDLLNGAKIHNLVSGEYKVVPVAGLFYAIGHSPNSKFLG---GQVKTADDGYI-LTEGPKT 274 (314)
T ss_dssp TCTTEEEECSEEEEEEEESSSSEEEEEEEETTTCCEEEEECSEEEECSCEEESCGGGT---TSSCBCTTSCB-CCBTTBC
T ss_pred cccceeeEeeeeeEEEEeeeeccceeEEeecccccceeeccccceEecccccChhHhc---ccceEcCCeeE-eCCCCcc
Confidence 6778999999889998876554222322 3456899999999999999999743 35677887755 8999999
Q ss_pred CCCcEEEeCcCCCCC-CChHHHHHhHHHHHHHHc
Q 008860 372 AVPSIWAVGDVTDRI-NLTPVALMEGGALAKTLF 404 (551)
Q Consensus 372 ~~~~vya~GD~~~~~-~~~~~A~~~g~~aa~~i~ 404 (551)
|+|||||+|||++.+ +++..|+.||++||.++.
T Consensus 275 s~pgIyA~GDv~~~~~~~~~~A~~~G~~AA~~~~ 308 (314)
T 4a5l_A 275 SVDGVFACGDVCDRVYRQAIVAAGSGCMAALSCE 308 (314)
T ss_dssp SSTTEEECSTTTCSSCCCHHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEEeccCCcchHHHHHHHHHHHHHHHHH
Confidence 999999999999875 588899999999998874
|
| >1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-38 Score=332.96 Aligned_cols=321 Identities=19% Similarity=0.253 Sum_probs=226.5
Q ss_pred CCCCCccEEEECCChHHHHHHHHHHhC--CCcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhhcc
Q 008860 68 PSHYDFDLFTIGAGSGGVRASRFAANF--GASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDESN 145 (551)
Q Consensus 68 ~~~~~~dVvIIGgG~aGl~aA~~l~~~--G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~ 145 (551)
+|+.++||||||||+||++||..|++. |.+|+|||+ ...++ +..|.+++.++..... .......
T Consensus 7 ~~~~~~~vvIIGgG~AGl~aA~~L~~~~~g~~V~lie~---------~~~~~----y~r~~lsk~l~~~~~~-~~~~~~~ 72 (493)
T 1m6i_A 7 KAPSHVPFLLIGGGTAAFAAARSIRARDPGARVLIVSE---------DPELP----YMRPPLSKELWFSDDP-NVTKTLR 72 (493)
T ss_dssp -CCSEEEEEEESCSHHHHHHHHHHHHHSTTCEEEEEES---------SSSCC----BCSGGGGTGGGCC--C-THHHHCE
T ss_pred CCCCcCCEEEECChHHHHHHHHHHHhcCCCCeEEEEeC---------CCCCC----CCCCCCCHHhhcCCcc-chhhccc
Confidence 344578999999999999999999885 899999993 11121 2234455554432211 0000000
Q ss_pred CCCcccCC-CCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEe-EEEEec--CCEEEE-cCEEEEeCeEEEcCCCC
Q 008860 146 GFGWKYGT-EPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIEG-RGKIVD--PHTVDV-DGKLYSARHILISVGGR 220 (551)
Q Consensus 146 ~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~i~--~~~v~v-~g~~~~~d~lviAtG~~ 220 (551)
..+|.... ...+.....+... ..+ ..+.+.+++++.+ .+..++ .+++.+ +++.+.||+||||||++
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~----~~l-----~~~~~~gv~~~~g~~v~~id~~~~~V~~~~g~~i~yd~lviATGs~ 143 (493)
T 1m6i_A 73 FKQWNGKERSIYFQPPSFYVSA----QDL-----PHIENGGVAVLTGKKVVQLDVRDNMVKLNDGSQITYEKCLIATGGT 143 (493)
T ss_dssp EECTTSCEEESBSSCGGGSBCT----TTT-----TTSTTCEEEEEETCCEEEEEGGGTEEEETTSCEEEEEEEEECCCEE
T ss_pred ccccccccccccccchHhhcch----hhh-----hhhhcCCeEEEcCCEEEEEECCCCEEEECCCCEEECCEEEECCCCC
Confidence 00110000 0000000000000 000 0012458999987 566665 467777 67889999999999999
Q ss_pred CCCCCCCCC------Cce---ecchhhhcCC---CCCCeEEEEcCcHHHHHHHHHHHh----CCCeEEEEeecCccCCC-
Q 008860 221 PFIPDIPGS------EYA---IDSDAALDLP---SKPEKIAIVGGGYIALEFAGIFSG----LTSEVHVFIRQKKVLRG- 283 (551)
Q Consensus 221 p~~p~i~g~------~~~---~~~~~~~~~~---~~~~~vvViG~G~~g~e~a~~l~~----~g~~Vtlv~~~~~~l~~- 283 (551)
|+.|++++. +.+ .+.+++..+. ..+++++|||+|++|+|+|..|.+ .|.+|+++++.+.++..
T Consensus 144 p~~~~~~~~~~~~~~~~v~~~~~~~d~~~l~~~~~~~~~vvViGgG~iG~E~A~~l~~~~~~~g~~V~~v~~~~~~~~~~ 223 (493)
T 1m6i_A 144 PRSLSAIDRAGAEVKSRTTLFRKIGDFRSLEKISREVKSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGNMGKI 223 (493)
T ss_dssp ECCCHHHHTSCHHHHHTEEECCSHHHHHHHHHHHHHCSEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSSSTTTTT
T ss_pred CCCCCCcccccccccCceEEEcCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHHHHhhhhhcCCEEEEEecCccccccc
Confidence 988776542 122 2444444332 237899999999999999999876 57899999988776655
Q ss_pred CCHHHHHHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCcCCCCCCCCccccCeeecC-CCC
Q 008860 284 FDEDIRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNTKNLGLEKVGVKMTK-NGA 362 (551)
Q Consensus 284 ~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~~~~l~l~~~gl~~~~-~G~ 362 (551)
+++++.+.+.+.++++||++++++.|++++.+++. +.|.+.+|+++++|.||+|+|.+|++++ ++.+++++++ +|+
T Consensus 224 l~~~~~~~~~~~l~~~GV~v~~~~~V~~i~~~~~~-~~v~l~dG~~i~aD~Vv~a~G~~pn~~l--~~~~gl~~~~~~gg 300 (493)
T 1m6i_A 224 LPEYLSNWTMEKVRREGVKVMPNAIVQSVGVSSGK-LLIKLKDGRKVETDHIVAAVGLEPNVEL--AKTGGLEIDSDFGG 300 (493)
T ss_dssp SCHHHHHHHHHHHHTTTCEEECSCCEEEEEEETTE-EEEEETTSCEEEESEEEECCCEEECCTT--HHHHTCCBCTTTCS
T ss_pred CCHHHHHHHHHHHHhcCCEEEeCCEEEEEEecCCe-EEEEECCCCEEECCEEEECCCCCccHHH--HHHcCCccccCCCc
Confidence 78899999999999999999999999999876544 6788999999999999999999999987 6788898885 689
Q ss_pred eEeCCCCCCCCCcEEEeCcCCCC---------CCChHHHHHhHHHHHHHHcCCCCCCCCCCCccE
Q 008860 363 IEVDEYSGTAVPSIWAVGDVTDR---------INLTPVALMEGGALAKTLFQAEPTKPDYSAVPS 418 (551)
Q Consensus 363 i~vd~~~~t~~~~vya~GD~~~~---------~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~~~ 418 (551)
|.||+++|| .|+|||+|||+.. ..++..|..||++||.||+|... .|...|+
T Consensus 301 i~Vd~~l~t-~~~IyA~GD~a~~~~~~~g~~~~~~~~~A~~qg~~aa~ni~g~~~---~~~~~~~ 361 (493)
T 1m6i_A 301 FRVNAELQA-RSNIWVAGDAACFYDIKLGRRRVEHHDHAVVSGRLAGENMTGAAK---PYWHQSM 361 (493)
T ss_dssp EECCTTCEE-ETTEEECGGGEEEEETTTEEECCCCHHHHHHHHHHHHHHHTSCCC---CCCCCCE
T ss_pred EEECCCccc-CCCeeEeeeeEeccCcccCccccchHHHHHHHHHHHHHHhcCCCC---CcCCcCc
Confidence 999999998 6999999999973 24577999999999999998643 3444444
|
| >2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-37 Score=308.44 Aligned_cols=287 Identities=21% Similarity=0.270 Sum_probs=215.9
Q ss_pred CCCCCccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhhccCC
Q 008860 68 PSHYDFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDESNGF 147 (551)
Q Consensus 68 ~~~~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~ 147 (551)
+|..++||+|||||++|+++|..|++.|++|+||| +..+||.|.+..++. .++.+
T Consensus 4 ~~~~~~dvvIIG~G~aGl~aA~~l~~~g~~v~lie----------~~~~gg~~~~~~~~~---------------~~~~~ 58 (325)
T 2q7v_A 4 PTAHDYDVVIIGGGPAGLTAAIYTGRAQLSTLILE----------KGMPGGQIAWSEEVE---------------NFPGF 58 (325)
T ss_dssp CCCEEEEEEEECCSHHHHHHHHHHHHTTCCEEEEE----------SSCTTGGGGGCSCBC---------------CSTTC
T ss_pred CccccCCEEEECCCHHHHHHHHHHHHcCCcEEEEe----------CCCCCcccccccccc---------------cCCCC
Confidence 34456899999999999999999999999999999 446788887543321 01111
Q ss_pred CcccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEeEEEEecC-------CEEEE-cCEEEEeCeEEEcCCC
Q 008860 148 GWKYGTEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIEGRGKIVDP-------HTVDV-DGKLYSARHILISVGG 219 (551)
Q Consensus 148 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~i~~-------~~v~v-~g~~~~~d~lviAtG~ 219 (551)
. ..+.+..+.. .+.+.+.+.+++++.+++..++. ..+.. +++.+.||+||+|||+
T Consensus 59 ~------~~~~~~~~~~-----------~l~~~~~~~gv~~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~~~vv~AtG~ 121 (325)
T 2q7v_A 59 P------EPIAGMELAQ-----------RMHQQAEKFGAKVEMDEVQGVQHDATSHPYPFTVRGYNGEYRAKAVILATGA 121 (325)
T ss_dssp S------SCBCHHHHHH-----------HHHHHHHHTTCEEEECCEEEEEECTTSSSCCEEEEESSCEEEEEEEEECCCE
T ss_pred C------CCCCHHHHHH-----------HHHHHHHHcCCEEEeeeEEEEEeccCCCceEEEEECCCCEEEeCEEEECcCC
Confidence 0 1123333222 22344566789988877665542 24444 6778999999999999
Q ss_pred CCCCCCCCCCCc-----eecchhhhcCCCCCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCCCCCHHHHHHHHH
Q 008860 220 RPFIPDIPGSEY-----AIDSDAALDLPSKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRDFVAE 294 (551)
Q Consensus 220 ~p~~p~i~g~~~-----~~~~~~~~~~~~~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~ 294 (551)
.|..|++||.+. +............+++++|||+|.+|+|+|..|.+.|.+|+++++.+.+.. ++.+ ..+
T Consensus 122 ~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~--~~~~---~~~ 196 (325)
T 2q7v_A 122 DPRKLGIPGEDNFWGKGVSTCATCDGFFYKGKKVVVIGGGDAAVEEGMFLTKFADEVTVIHRRDTLRA--NKVA---QAR 196 (325)
T ss_dssp EECCCCCTTTTTTBTTTEESCHHHHGGGGTTCEEEEECCSHHHHHHHHHHTTTCSEEEEECSSSSCCS--CHHH---HHH
T ss_pred CcCCCCCCChhhccCceEEEeccCCHHHcCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEeCCCcCCc--chHH---HHH
Confidence 999999998642 222222222223468999999999999999999999999999999887542 3332 223
Q ss_pred HHHhcCcEEEcCcccEEEEEcCCceEEEEEC---CCe--EEEeeEEEEecCcCCCCCCCCccccCeeecCCCCeEeCCCC
Q 008860 295 QMSLRGIEFHTEESPQAILKSTDGSLSVKTN---KGT--VDGFSHVMFATGRRPNTKNLGLEKVGVKMTKNGAIEVDEYS 369 (551)
Q Consensus 295 ~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~---~G~--~i~~d~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~ 369 (551)
.+++.||+++++++++++..++ +...|.+. +|+ ++++|.||+|+|++|++++ ++.. ++++++|+|.||+++
T Consensus 197 l~~~~gv~i~~~~~v~~i~~~~-~v~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~--l~~~-~~~~~~g~i~vd~~~ 272 (325)
T 2q7v_A 197 AFANPKMKFIWDTAVEEIQGAD-SVSGVKLRNLKTGEVSELATDGVFIFIGHVPNTAF--VKDT-VSLRDDGYVDVRDEI 272 (325)
T ss_dssp HHTCTTEEEECSEEEEEEEESS-SEEEEEEEETTTCCEEEEECSEEEECSCEEESCGG--GTTT-SCBCTTSCBCCBTTT
T ss_pred HHhcCCceEecCCceEEEccCC-cEEEEEEEECCCCcEEEEEcCEEEEccCCCCChHH--Hhhh-cccCCCccEecCCCC
Confidence 3345699999999999998753 32355554 665 7899999999999999987 4555 777888999999999
Q ss_pred CCCCCcEEEeCcCCCC-CCChHHHHHhHHHHHHHHcC
Q 008860 370 GTAVPSIWAVGDVTDR-INLTPVALMEGGALAKTLFQ 405 (551)
Q Consensus 370 ~t~~~~vya~GD~~~~-~~~~~~A~~~g~~aa~~i~g 405 (551)
+|+.|+|||+|||+.. ++++..|..||+++|.||..
T Consensus 273 ~t~~~~vya~GD~~~~~~~~~~~A~~~g~~aa~~i~~ 309 (325)
T 2q7v_A 273 YTNIPMLFAAGDVSDYIYRQLATSVGAGTRAAMMTER 309 (325)
T ss_dssp BCSSTTEEECSTTTCSSCCCHHHHHHHHHHHHHHHHH
T ss_pred ccCCCCEEEeecccCccHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999987 68999999999999999863
|
| >2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.7e-37 Score=305.66 Aligned_cols=283 Identities=21% Similarity=0.238 Sum_probs=215.0
Q ss_pred CccEEEECCChHHHHHHHHHHhCCC-cEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhhccCCCcc
Q 008860 72 DFDLFTIGAGSGGVRASRFAANFGA-SVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDESNGFGWK 150 (551)
Q Consensus 72 ~~dVvIIGgG~aGl~aA~~l~~~G~-~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~ 150 (551)
+|||+|||||++|+++|..|++.|+ +|+||| +...||.|.+..++.. ++.+
T Consensus 1 ~~dvvIIG~G~aGl~aA~~l~~~g~~~v~lie----------~~~~gg~~~~~~~~~~---------------~~~~--- 52 (311)
T 2q0l_A 1 MIDCAIIGGGPAGLSAGLYATRGGVKNAVLFE----------KGMPGGQITGSSEIEN---------------YPGV--- 52 (311)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTTCSSEEEEC----------SSSTTCGGGGCSCBCC---------------STTC---
T ss_pred CceEEEECccHHHHHHHHHHHHCCCCcEEEEc----------CCCCCccccccccccc---------------CCCC---
Confidence 3799999999999999999999999 999999 4568888876443220 1111
Q ss_pred cCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEeEEEEec--CC--EEEE-cCEEEEeCeEEEcCCCCCCCCC
Q 008860 151 YGTEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIEGRGKIVD--PH--TVDV-DGKLYSARHILISVGGRPFIPD 225 (551)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~i~--~~--~v~v-~g~~~~~d~lviAtG~~p~~p~ 225 (551)
...++...+..+ +.+.+.+.+++++..++..++ .. .+.+ +++.+.||+||+|||+.|..|+
T Consensus 53 ---~~~~~~~~~~~~-----------l~~~~~~~~v~~~~~~v~~i~~~~~~~~v~~~~g~~~~~~~vv~AtG~~~~~~~ 118 (311)
T 2q0l_A 53 ---KEVVSGLDFMQP-----------WQEQCFRFGLKHEMTAVQRVSKKDSHFVILAEDGKTFEAKSVIIATGGSPKRTG 118 (311)
T ss_dssp ---CSCBCHHHHHHH-----------HHHHHHTTSCEEECSCEEEEEEETTEEEEEETTSCEEEEEEEEECCCEEECCCC
T ss_pred ---cccCCHHHHHHH-----------HHHHHHHcCCEEEEEEEEEEEEcCCEEEEEEcCCCEEECCEEEECCCCCCCCCC
Confidence 012233333222 223445668888776665554 33 3434 6678999999999999999999
Q ss_pred CCCCC-----ceecchhhhcCCCCCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCCCCCHHHHHHHHHHHH-hc
Q 008860 226 IPGSE-----YAIDSDAALDLPSKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRDFVAEQMS-LR 299 (551)
Q Consensus 226 i~g~~-----~~~~~~~~~~~~~~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~-~~ 299 (551)
+||.+ .++...........+++++|||+|.+|+|+|..|.+.|.+|+++++.+.+. .++. +.+.+. +.
T Consensus 119 ~~g~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~--~~~~----~~~~l~~~~ 192 (311)
T 2q0l_A 119 IKGESEYWGKGVSTCATCDGFFYKNKEVAVLGGGDTAVEEAIYLANICKKVYLIHRRDGFR--CAPI----TLEHAKNND 192 (311)
T ss_dssp CBTHHHHBTTTEESCHHHHGGGGTTSEEEEECCSHHHHHHHHHHHTTSSEEEEECSSSSCC--SCHH----HHHHHHTCT
T ss_pred CCChhhccCCcEEEeecCChhhcCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEeeCCccC--CCHH----HHHHHhhCC
Confidence 98853 233332222222346899999999999999999999999999999988753 3443 334444 57
Q ss_pred CcEEEcCcccEEEEEcCCceEEEEEC---CCe--EEEeeEEEEecCcCCCCCCCCccccC----eeecCCCCeEeCCCCC
Q 008860 300 GIEFHTEESPQAILKSTDGSLSVKTN---KGT--VDGFSHVMFATGRRPNTKNLGLEKVG----VKMTKNGAIEVDEYSG 370 (551)
Q Consensus 300 Gv~i~~~~~v~~i~~~~~~~~~V~~~---~G~--~i~~d~vi~a~G~~p~~~~l~l~~~g----l~~~~~G~i~vd~~~~ 370 (551)
||++++++.++++..++++...|.+. +|+ ++++|.||+|+|+.|++++ ++..+ ++++++|+|.||+++|
T Consensus 193 gv~v~~~~~v~~i~~~~~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~--l~~~g~~~~l~~~~~g~i~vd~~~~ 270 (311)
T 2q0l_A 193 KIEFLTPYVVEEIKGDASGVSSLSIKNTATNEKRELVVPGFFIFVGYDVNNAV--LKQEDNSMLCKCDEYGSIVVDFSMK 270 (311)
T ss_dssp TEEEETTEEEEEEEEETTEEEEEEEEETTTCCEEEEECSEEEECSCEEECCGG--GBCTTSCBSSCBCTTSCBCCCTTCB
T ss_pred CeEEEeCCEEEEEECCCCcEeEEEEEecCCCceEEEecCEEEEEecCccChhh--hhcccccceeEeccCCCEEeCCccc
Confidence 99999999999998765542345554 665 6899999999999999987 45553 8888889999999999
Q ss_pred CCCCcEEEeCcCCCC-CCChHHHHHhHHHHHHHHc
Q 008860 371 TAVPSIWAVGDVTDR-INLTPVALMEGGALAKTLF 404 (551)
Q Consensus 371 t~~~~vya~GD~~~~-~~~~~~A~~~g~~aa~~i~ 404 (551)
|+.|+|||+|||+.. ++++..|..||+++|.||.
T Consensus 271 t~~~~vya~GD~~~~~~~~~~~A~~~g~~aa~~i~ 305 (311)
T 2q0l_A 271 TNVQGLFAAGDIRIFAPKQVVCAASDGATAALSVI 305 (311)
T ss_dssp CSSTTEEECSTTBTTCCCCHHHHHHHHHHHHHHHH
T ss_pred cCCCCeEEcccccCcchHHHHHHHHhHHHHHHHHH
Confidence 999999999999987 6899999999999999986
|
| >3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.4e-37 Score=307.03 Aligned_cols=286 Identities=23% Similarity=0.292 Sum_probs=217.2
Q ss_pred CCCCCccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhhccCC
Q 008860 68 PSHYDFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDESNGF 147 (551)
Q Consensus 68 ~~~~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~ 147 (551)
.|..++||+|||||++|+++|..|++.|++|+||| +...||.|.+..++. .++.+
T Consensus 12 ~m~~~~dvvIIG~G~aGl~aA~~l~~~g~~v~lie----------~~~~gg~~~~~~~~~---------------~~~~~ 66 (319)
T 3cty_A 12 EKERDFDVVIVGAGAAGFSAAVYAARSGFSVAILD----------KAVAGGLTAEAPLVE---------------NYLGF 66 (319)
T ss_dssp --CCEEEEEEECCSHHHHHHHHHHHHTTCCEEEEE----------SSSTTGGGGGCSCBC---------------CBTTB
T ss_pred cccCCCcEEEECcCHHHHHHHHHHHhCCCcEEEEe----------CCCCCccccccchhh---------------hcCCC
Confidence 35557999999999999999999999999999999 456788876543321 01111
Q ss_pred CcccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEeEEEEec--CC--EEEEcCEEEEeCeEEEcCCCCCCC
Q 008860 148 GWKYGTEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIEGRGKIVD--PH--TVDVDGKLYSARHILISVGGRPFI 223 (551)
Q Consensus 148 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~i~--~~--~v~v~g~~~~~d~lviAtG~~p~~ 223 (551)
..++...+.. .+...+.+.+++++.+++..++ .. .+.+++..+.||++|+|||+.|..
T Consensus 67 -------~~~~~~~~~~-----------~~~~~~~~~~v~~~~~~v~~i~~~~~~~~v~~~~~~~~~~~li~AtG~~~~~ 128 (319)
T 3cty_A 67 -------KSIVGSELAK-----------LFADHAANYAKIREGVEVRSIKKTQGGFDIETNDDTYHAKYVIITTGTTHKH 128 (319)
T ss_dssp -------SSBCHHHHHH-----------HHHHHHHTTSEEEETCCEEEEEEETTEEEEEESSSEEEEEEEEECCCEEECC
T ss_pred -------cccCHHHHHH-----------HHHHHHHHcCCEEEEeeEEEEEEeCCEEEEEECCCEEEeCEEEECCCCCccc
Confidence 1122222222 2233455668888776666554 33 344466789999999999999999
Q ss_pred CCCCCCCc-----eecchhhhcCCCCCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCCCCCHHHHHHHHHHHHh
Q 008860 224 PDIPGSEY-----AIDSDAALDLPSKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRDFVAEQMSL 298 (551)
Q Consensus 224 p~i~g~~~-----~~~~~~~~~~~~~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~ 298 (551)
|++||.+. +............+++++|||+|.+|+|+|..|.+.|.+|+++++.+.+.. ++ .+.+.+++
T Consensus 129 ~~i~g~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~~g~e~a~~l~~~g~~V~~i~~~~~~~~--~~----~l~~~l~~ 202 (319)
T 3cty_A 129 LGVKGESEYFGKGTSYCSTCDGYLFKGKRVVTIGGGNSGAIAAISMSEYVKNVTIIEYMPKYMC--EN----AYVQEIKK 202 (319)
T ss_dssp CCCBTTTTTBTTTEESCHHHHGGGGBTSEEEEECCSHHHHHHHHHHTTTBSEEEEECSSSSCCS--CH----HHHHHHHH
T ss_pred CCCCChHHhCCceEEEEEecchhhcCCCeEEEECCCHHHHHHHHHHHhhCCcEEEEEcCCccCC--CH----HHHHHHhc
Confidence 98888642 222222222223468999999999999999999999999999999877532 33 34556678
Q ss_pred cCcEEEcCcccEEEEEcCCceEEEEEC---CCe--EEEeeEEEEecCcCCCCCCCCccccCeeecCCCCeEeCCCCCCCC
Q 008860 299 RGIEFHTEESPQAILKSTDGSLSVKTN---KGT--VDGFSHVMFATGRRPNTKNLGLEKVGVKMTKNGAIEVDEYSGTAV 373 (551)
Q Consensus 299 ~Gv~i~~~~~v~~i~~~~~~~~~V~~~---~G~--~i~~d~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~t~~ 373 (551)
.||+++++++++++..+++....|.+. +|+ ++++|.||+|+|+.|++++ ++..+++++++|+|.||+++||+.
T Consensus 203 ~gv~i~~~~~v~~i~~~~~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~--l~~~gl~~~~~g~i~vd~~~~t~~ 280 (319)
T 3cty_A 203 RNIPYIMNAQVTEIVGDGKKVTGVKYKDRTTGEEKLIETDGVFIYVGLIPQTSF--LKDSGVKLDERGYIVVDSRQRTSV 280 (319)
T ss_dssp TTCCEECSEEEEEEEESSSSEEEEEEEETTTCCEEEECCSEEEECCCEEECCGG--GTTSCCCBCTTSCBCCCTTCBCSS
T ss_pred CCcEEEcCCeEEEEecCCceEEEEEEEEcCCCceEEEecCEEEEeeCCccChHH--HhhccccccCCccEeCCCCCccCC
Confidence 999999999999998865433445553 664 6899999999999999987 567788889899999999999999
Q ss_pred CcEEEeCcCCCC-CCChHHHHHhHHHHHHHHc
Q 008860 374 PSIWAVGDVTDR-INLTPVALMEGGALAKTLF 404 (551)
Q Consensus 374 ~~vya~GD~~~~-~~~~~~A~~~g~~aa~~i~ 404 (551)
|+|||+|||+.. ++++..|+.||++||.||.
T Consensus 281 ~~vya~GD~~~~~~~~~~~A~~~g~~aa~~i~ 312 (319)
T 3cty_A 281 PGVYAAGDVTSGNFAQIASAVGDGCKAALSLY 312 (319)
T ss_dssp TTEEECSTTBTTCCCCHHHHHHHHHHHHHHHH
T ss_pred CCEEEeecccCcchhhHHHHHHHHHHHHHHHH
Confidence 999999999987 5889999999999999986
|
| >3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.7e-37 Score=305.86 Aligned_cols=286 Identities=19% Similarity=0.227 Sum_probs=220.3
Q ss_pred CCccEEEECCChHHHHHHHHHHhCCCcEEE-EccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhhccCCCc
Q 008860 71 YDFDLFTIGAGSGGVRASRFAANFGASVAI-CELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDESNGFGW 149 (551)
Q Consensus 71 ~~~dVvIIGgG~aGl~aA~~l~~~G~~V~l-iE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~ 149 (551)
.++||+|||||+||+++|..|++.|++|+| +| +..+||.|.+..+++. ++.+
T Consensus 3 ~~~~vvIIG~G~aGl~aA~~l~~~g~~v~li~e----------~~~~gG~~~~~~~~~~---------------~~~~-- 55 (315)
T 3r9u_A 3 AMLDVAIIGGGPAGLSAGLYATRGGLKNVVMFE----------KGMPGGQITSSSEIEN---------------YPGV-- 55 (315)
T ss_dssp SCEEEEEECCSHHHHHHHHHHHHHTCSCEEEEC----------SSSTTGGGGGCSCBCC---------------STTC--
T ss_pred CCceEEEECCCHHHHHHHHHHHHCCCCeEEEEe----------CCCCCceeeeeceecc---------------CCCC--
Confidence 358999999999999999999999999999 99 5667898876443321 0110
Q ss_pred ccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEeEEEEe-cC--CEEE--E--cCEEEEeCeEEEcCCCCCC
Q 008860 150 KYGTEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIEGRGKIV-DP--HTVD--V--DGKLYSARHILISVGGRPF 222 (551)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~i-~~--~~v~--v--~g~~~~~d~lviAtG~~p~ 222 (551)
.......++..+ +...+.+.+++++.+++..+ +. ..+. + ++ .+.||++|+|||+.|.
T Consensus 56 ----~~~~~~~~~~~~-----------~~~~~~~~~v~~~~~~v~~i~~~~~~~~~v~~~~~~-~~~~d~lvlAtG~~~~ 119 (315)
T 3r9u_A 56 ----AQVMDGISFMAP-----------WSEQCMRFGLKHEMVGVEQILKNSDGSFTIKLEGGK-TELAKAVIVCTGSAPK 119 (315)
T ss_dssp ----CSCBCHHHHHHH-----------HHHHHTTTCCEEECCCEEEEEECTTSCEEEEETTSC-EEEEEEEEECCCEEEC
T ss_pred ----CCCCCHHHHHHH-----------HHHHHHHcCcEEEEEEEEEEecCCCCcEEEEEecCC-EEEeCEEEEeeCCCCC
Confidence 112233333322 33445667899988877666 33 3333 5 45 8999999999999999
Q ss_pred CCCCCCCCc-----eecchhhhcCCCCCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCCCCCHHHHHHHHHHHH
Q 008860 223 IPDIPGSEY-----AIDSDAALDLPSKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRDFVAEQMS 297 (551)
Q Consensus 223 ~p~i~g~~~-----~~~~~~~~~~~~~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~ 297 (551)
.|++||.+. +.+..........+++++|||+|.+++|+|..|.+.+.+|+++++.+.+. .+++ .+.+.++
T Consensus 120 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~viG~g~~~~e~a~~l~~~g~~v~~~~~~~~~~--~~~~---~~~~~~~ 194 (315)
T 3r9u_A 120 KAGFKGEDEFFGKGVSTCATCDGFFYKNKEVAVLGGGDTALEEALYLANICSKIYLIHRRDEFR--AAPS---TVEKVKK 194 (315)
T ss_dssp CCCCBTTTTTBTTTEESCHHHHGGGGTTSEEEEECCBHHHHHHHHHHHTTSSEEEEECSSSSCB--SCHH---HHHHHHH
T ss_pred CCCCCChhhcCCCeEEeeecccccccCcCEEEEECCCHHHHHHHHHHHhhCCEEEEEEeCCCCC--CCHH---HHHHHHh
Confidence 999998753 33333333333457899999999999999999999999999999988763 2333 3455567
Q ss_pred hcCcEEEcCcccEEEEEcCCceEEEEEC--CCe--EEEeeEEEEecCcCCCCCCCCc-cccC-eeecCCCCeEeCCCCCC
Q 008860 298 LRGIEFHTEESPQAILKSTDGSLSVKTN--KGT--VDGFSHVMFATGRRPNTKNLGL-EKVG-VKMTKNGAIEVDEYSGT 371 (551)
Q Consensus 298 ~~Gv~i~~~~~v~~i~~~~~~~~~V~~~--~G~--~i~~d~vi~a~G~~p~~~~l~l-~~~g-l~~~~~G~i~vd~~~~t 371 (551)
+.||++++++.+.++..++++...|.+. +|+ ++++|.||+|+|+.|+..++.. +..| ++++++|+|.||+++||
T Consensus 195 ~~gv~~~~~~~v~~i~~~~~~~~~v~~~~~~g~~~~~~~D~vv~a~G~~p~~~~~~~~~~~g~l~~~~~g~i~vd~~~~t 274 (315)
T 3r9u_A 195 NEKIELITSASVDEVYGDKMGVAGVKVKLKDGSIRDLNVPGIFTFVGLNVRNEILKQDDSKFLCNMEEGGQVSVDLKMQT 274 (315)
T ss_dssp CTTEEEECSCEEEEEEEETTEEEEEEEECTTSCEEEECCSCEEECSCEEECCGGGBCTTSCBSSCBCTTSCBCCCTTCBC
T ss_pred cCCeEEEeCcEEEEEEcCCCcEEEEEEEcCCCCeEEeecCeEEEEEcCCCCchhhhcccccceeeecCCCcEEeCCCccc
Confidence 8899999999999998876543445554 775 7999999999999999987543 3465 88899999999999999
Q ss_pred CCCcEEEeCcCCC-CCCChHHHHHhHHHHHHHHc
Q 008860 372 AVPSIWAVGDVTD-RINLTPVALMEGGALAKTLF 404 (551)
Q Consensus 372 ~~~~vya~GD~~~-~~~~~~~A~~~g~~aa~~i~ 404 (551)
+.|+|||+|||++ .++.+..|+.||++||.||.
T Consensus 275 ~~~~v~a~GD~~~~~~~~~~~A~~~g~~aa~~i~ 308 (315)
T 3r9u_A 275 SVAGLFAAGDLRKDAPKQVICAAGDGAVAALSAM 308 (315)
T ss_dssp SSTTEEECGGGBTTCCCCHHHHHHHHHHHHHHHH
T ss_pred CCCCEEEeecccCCchhhhhhHHhhHHHHHHHHH
Confidence 9999999999986 46889999999999999986
|
| >4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-37 Score=308.82 Aligned_cols=280 Identities=16% Similarity=0.196 Sum_probs=207.9
Q ss_pred CCCccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhhccCCCc
Q 008860 70 HYDFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDESNGFGW 149 (551)
Q Consensus 70 ~~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~ 149 (551)
+++|||+||||||||++||++|++.|++|+||| +...||.+.. +++.|
T Consensus 4 M~~yDVvIIGaGpAGlsAA~~lar~g~~v~lie----------~~~~gg~~~~--------------------~~~~~-- 51 (304)
T 4fk1_A 4 MKYIDCAVIGAGPAGLNASLVLGRARKQIALFD----------NNTNRNRVTQ--------------------NSHGF-- 51 (304)
T ss_dssp --CEEEEEECCSHHHHHHHHHHHHTTCCEEEEE----------CSCCGGGGSS--------------------CBCCS--
T ss_pred CCCcCEEEECCCHHHHHHHHHHHHCCCCEEEEe----------CCCCCCeeee--------------------ecCCc--
Confidence 457999999999999999999999999999999 5556665431 01111
Q ss_pred ccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEeEEEEe---cC--CEEEE-cCEEEEeCeEEEcCCCCCCC
Q 008860 150 KYGTEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIEGRGKIV---DP--HTVDV-DGKLYSARHILISVGGRPFI 223 (551)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~i---~~--~~v~v-~g~~~~~d~lviAtG~~p~~ 223 (551)
...+.+.+.++.....+ +..+..++.++.+.+..+ +. +++.. +++++.||+||||||++|+.
T Consensus 52 --~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~a~~liiATGs~p~~ 119 (304)
T 4fk1_A 52 --ITRDGIKPEEFKEIGLN----------EVMKYPSVHYYEKTVVMITKQSTGLFEIVTKDHTKYLAERVLLATGMQEEF 119 (304)
T ss_dssp --TTCTTBCHHHHHHHHHH----------HHTTSTTEEEEECCEEEEEECTTSCEEEEETTCCEEEEEEEEECCCCEEEC
T ss_pred --cCCCCCCHHHHHHHHHH----------HHHhcCCEEEEeeEEEEeeecCCCcEEEEECCCCEEEeCEEEEccCCcccc
Confidence 01122344443332211 112223567777655543 22 24444 77899999999999999999
Q ss_pred CCCCCCC-----ceecchhhhcCCCCCCeEEEEcCcH-HHHHHHHHHHhCCCeEEEEeecCccCCCCCHHHHHHHHHHHH
Q 008860 224 PDIPGSE-----YAIDSDAALDLPSKPEKIAIVGGGY-IALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRDFVAEQMS 297 (551)
Q Consensus 224 p~i~g~~-----~~~~~~~~~~~~~~~~~vvViG~G~-~g~e~a~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~ 297 (551)
|++||.+ .+.++.........+++++|||+|. .++|+|..+++.+.+|+++.+.+.+ .+.+.+.|+
T Consensus 120 p~i~G~~~~~~~~v~~~~~~~~~~~~~~~~~VIggG~~~~~e~a~~~~~~~~~v~i~~~~~~~--------~~~~~~~l~ 191 (304)
T 4fk1_A 120 PSIPNVREYYGKSLFSCPYCDGWELKDQPLIIISENEDHTLHMTKLVYNWSTDLVIATNGNEL--------SQTIMDELS 191 (304)
T ss_dssp CSCTTHHHHBTTTEESCHHHHSGGGTTSCEEEECCSHHHHHHHHHHHTTTCSCEEEECSSCCC--------CHHHHHHHH
T ss_pred ccccCccccccceeeeccccchhHhcCCceeeecCCCchhhhHHHHHHhCCceEEEEeccccc--------hhhhhhhhh
Confidence 9999964 2444444333334467788888775 5689999999999999999886643 234567788
Q ss_pred hcCcEEEcCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCcCCCCCCCCccccCeeecCCCCeEeCCCCCCCCCcEE
Q 008860 298 LRGIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNTKNLGLEKVGVKMTKNGAIEVDEYSGTAVPSIW 377 (551)
Q Consensus 298 ~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~t~~~~vy 377 (551)
+.|++++.+ .++.+..+++....|++.+|+++++|.+++++|..|+..+ +++.|++++++|+|.||+++|||+||||
T Consensus 192 ~~g~~~~~~-~v~~~~~~~~~~~~v~~~~g~~i~~~~~vi~~g~~~~~~~--~~~~g~~~~~~G~I~vd~~~~Ts~p~Iy 268 (304)
T 4fk1_A 192 NKNIPVITE-SIRTLQGEGGYLKKVEFHSGLRIERAGGFIVPTFFRPNQF--IEQLGCELQSNGTFVIDDFGRTSEKNIY 268 (304)
T ss_dssp TTTCCEECS-CEEEEESGGGCCCEEEETTSCEECCCEEEECCEEECSSCH--HHHTTCCCCTTSSSCSSTTCBCSSTTEE
T ss_pred ccceeEeee-eEEEeecCCCeeeeeeccccceeeecceeeeeccccCChh--hhhcCeEECCCCCEEECcCCccCCCCEE
Confidence 999999987 5788876655545689999999999999888888777766 7888999999999999999999999999
Q ss_pred EeCcCCCC-CCChHHHHHhHHHHHHHHc
Q 008860 378 AVGDVTDR-INLTPVALMEGGALAKTLF 404 (551)
Q Consensus 378 a~GD~~~~-~~~~~~A~~~g~~aa~~i~ 404 (551)
|+|||++. +.++..|+.||++||..|.
T Consensus 269 A~GDv~~~~~~~~~~A~~~G~~AA~~i~ 296 (304)
T 4fk1_A 269 LAGETTTQGPSSLIIAASQGNKAAIAIN 296 (304)
T ss_dssp ECSHHHHTSCCCHHHHHHHHHHHHHHHH
T ss_pred EEeccCCCcchHHHHHHHHHHHHHHHHH
Confidence 99999974 5678899999999998774
|
| >3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-36 Score=304.37 Aligned_cols=282 Identities=21% Similarity=0.286 Sum_probs=216.6
Q ss_pred CCccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhhccCCCcc
Q 008860 71 YDFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDESNGFGWK 150 (551)
Q Consensus 71 ~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~ 150 (551)
+++||+|||||++|+++|..|++.|++|+||| +. +||.|.+.+... ..+
T Consensus 14 ~~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie----------~~-~gg~~~~~~~~~---------------~~~----- 62 (323)
T 3f8d_A 14 EKFDVIIVGLGPAAYGAALYSARYMLKTLVIG----------ET-PGGQLTEAGIVD---------------DYL----- 62 (323)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHHTTCCEEEEE----------SS-TTGGGGGCCEEC---------------CST-----
T ss_pred CccCEEEECccHHHHHHHHHHHHCCCcEEEEe----------cc-CCCeeccccccc---------------ccC-----
Confidence 35899999999999999999999999999999 44 888886532211 000
Q ss_pred cCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEeEEEEecCC----EEEE-cCEEEEeCeEEEcCCCCCCCCC
Q 008860 151 YGTEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIEGRGKIVDPH----TVDV-DGKLYSARHILISVGGRPFIPD 225 (551)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~i~~~----~v~v-~g~~~~~d~lviAtG~~p~~p~ 225 (551)
..+......+. ..+.+.+.+.+++++..++..++.. .+.+ ++..+.||+||+|||+.|..|+
T Consensus 63 --~~~~~~~~~~~-----------~~~~~~~~~~~v~~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~lvlAtG~~~~~~~ 129 (323)
T 3f8d_A 63 --GLIEIQASDMI-----------KVFNKHIEKYEVPVLLDIVEKIENRGDEFVVKTKRKGEFKADSVILGIGVKRRKLG 129 (323)
T ss_dssp --TSTTEEHHHHH-----------HHHHHHHHTTTCCEEESCEEEEEEC--CEEEEESSSCEEEEEEEEECCCCEECCCC
T ss_pred --CCCCCCHHHHH-----------HHHHHHHHHcCCEEEEEEEEEEEecCCEEEEEECCCCEEEcCEEEECcCCCCccCC
Confidence 01111222222 2233445667888887776666533 3444 5578999999999999999999
Q ss_pred CCCCCc-----eecchhhhcCCCCCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCCCCCHHHHHHHHHHHHhcC
Q 008860 226 IPGSEY-----AIDSDAALDLPSKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRDFVAEQMSLRG 300 (551)
Q Consensus 226 i~g~~~-----~~~~~~~~~~~~~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~G 300 (551)
+||.+. +............+++++|+|+|.+++|+|..|.+.|.+|+++++.+.+++ +++ .+.+.+++.|
T Consensus 130 i~g~~~~~~~~~~~~~~~~~~~~~~~~v~vvG~G~~~~e~a~~l~~~g~~v~~~~~~~~~~~--~~~---~~~~~~~~~g 204 (323)
T 3f8d_A 130 VPGEQEFAGRGISYCSVADAPLFKNRVVAVIGGGDSALEGAEILSSYSTKVYLIHRRDTFKA--QPI---YVETVKKKPN 204 (323)
T ss_dssp CTTTTTTBTTTEESCHHHHGGGGTTCEEEEECCSHHHHHHHHHHHHHSSEEEEECSSSSCCS--CHH---HHHHHHTCTT
T ss_pred CCchhhhcCCceEEeccCCHhHcCCCEEEEECCCHHHHHHHHHHHHhCCeEEEEEeCCCCCc--CHH---HHHHHHhCCC
Confidence 998653 222222222223478999999999999999999999999999999988765 332 2333444569
Q ss_pred cEEEcCcccEEEEEcCCceEEEEECC---Ce--EEEeeEEEEecCcCCCCCCCCccccCeeecCCCCeEeCCCCCCCCCc
Q 008860 301 IEFHTEESPQAILKSTDGSLSVKTNK---GT--VDGFSHVMFATGRRPNTKNLGLEKVGVKMTKNGAIEVDEYSGTAVPS 375 (551)
Q Consensus 301 v~i~~~~~v~~i~~~~~~~~~V~~~~---G~--~i~~d~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~t~~~~ 375 (551)
|++++++.++++..++ +...|.+.+ |+ ++++|.||+|+|+.|+.++ ++..+++++++|+|.||++++|+.||
T Consensus 205 v~~~~~~~v~~i~~~~-~~~~v~~~~~~~g~~~~~~~D~vv~a~G~~p~~~~--~~~~g~~~~~~g~i~vd~~~~t~~~~ 281 (323)
T 3f8d_A 205 VEFVLNSVVKEIKGDK-VVKQVVVENLKTGEIKELNVNGVFIEIGFDPPTDF--AKSNGIETDTNGYIKVDEWMRTSVPG 281 (323)
T ss_dssp EEEECSEEEEEEEESS-SEEEEEEEETTTCCEEEEECSEEEECCCEECCHHH--HHHTTCCBCTTSSBCCCTTCBCSSTT
T ss_pred cEEEeCCEEEEEeccC-ceeEEEEEECCCCceEEEEcCEEEEEECCCCChhH--HhhcCeeecCCCcEecCCCceecCCC
Confidence 9999999999998764 334566654 65 7999999999999999877 67889999999999999999999999
Q ss_pred EEEeCcCCCC---CCChHHHHHhHHHHHHHHc
Q 008860 376 IWAVGDVTDR---INLTPVALMEGGALAKTLF 404 (551)
Q Consensus 376 vya~GD~~~~---~~~~~~A~~~g~~aa~~i~ 404 (551)
|||+|||++. ++.+..|..||+++|.||.
T Consensus 282 vya~GD~~~~~~~~~~~~~A~~~g~~aa~~i~ 313 (323)
T 3f8d_A 282 VFAAGDCTSAWLGFRQVITAVAQGAVAATSAY 313 (323)
T ss_dssp EEECSTTBSTTTTCCCHHHHHHHHHHHHHHHH
T ss_pred EEEcceecCCCCcccceeehhhHHHHHHHHHH
Confidence 9999999995 7899999999999999986
|
| >1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-36 Score=300.86 Aligned_cols=286 Identities=21% Similarity=0.246 Sum_probs=219.4
Q ss_pred CCccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhhccCCCcc
Q 008860 71 YDFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDESNGFGWK 150 (551)
Q Consensus 71 ~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~ 150 (551)
+++||+|||||++|+++|..|++.|++|+||| +...||.|....... .++.+
T Consensus 4 ~~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie----------~~~~gg~~~~~~~~~---------------~~~~~--- 55 (320)
T 1trb_A 4 KHSKLLILGSGPAGYTAAVYAARANLQPVLIT----------GMEKGGQLTTTTEVE---------------NWPGD--- 55 (320)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHTTTCCCEEEC----------CSSTTGGGGGCSBCC---------------CSTTC---
T ss_pred CcCCEEEECcCHHHHHHHHHHHHCCCcEEEEc----------cCCCCceEecchhhh---------------hCCCC---
Confidence 35899999999999999999999999999999 556788765322110 11111
Q ss_pred cCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEeEEEEecC--CEEE-E-cCEEEEeCeEEEcCCCCCCCCCC
Q 008860 151 YGTEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIEGRGKIVDP--HTVD-V-DGKLYSARHILISVGGRPFIPDI 226 (551)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~i~~--~~v~-v-~g~~~~~d~lviAtG~~p~~p~i 226 (551)
...+....+..+ +...+.+.+++++.+++..++. ..+. . ++..+.||+||+|||++|..|++
T Consensus 56 ---~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~v~~i~~~~~~~~v~~~~~~~~~~~lv~AtG~~~~~~~~ 121 (320)
T 1trb_A 56 ---PNDLTGPLLMER-----------MHEHATKFETEIIFDHINKVDLQNRPFRLNGDNGEYTCDALIIATGASARYLGL 121 (320)
T ss_dssp ---CSSCBHHHHHHH-----------HHHHHHHTTCEEECCCEEEEECSSSSEEEEESSCEEEEEEEEECCCEEECCCCC
T ss_pred ---CCCCCHHHHHHH-----------HHHHHHHCCCEEEEeeeeEEEecCCEEEEEeCCCEEEcCEEEECCCCCcCCCCC
Confidence 011222332222 2234556789998887777653 2222 3 67789999999999999998888
Q ss_pred CCCC-----ceecchhhhcCCCCCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCCCCCHHHHHHHHHHHHhcCc
Q 008860 227 PGSE-----YAIDSDAALDLPSKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRDFVAEQMSLRGI 301 (551)
Q Consensus 227 ~g~~-----~~~~~~~~~~~~~~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~Gv 301 (551)
||.+ .+.+..........+++++|||+|.+|+|+|..|.+.|.+|+++++.+.+. .++.+.+.+.+.+++.||
T Consensus 122 ~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~--~~~~~~~~l~~~l~~~gv 199 (320)
T 1trb_A 122 PSEEAFKGRGVSACATSDGFFYRNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFR--AEKILIKRLMDKVENGNI 199 (320)
T ss_dssp HHHHHTBTTTEESCHHHHGGGGTTSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSCC--CCHHHHHHHHHHHHTSSE
T ss_pred CChHHhCCceeEecccCCccccCCCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeCCccc--cCHHHHHHHHHhcccCCe
Confidence 8753 122222222222357899999999999999999999999999999988754 377788888899999999
Q ss_pred EEEcCcccEEEEEcCCceEEEEECC----C--eEEEeeEEEEecCcCCCCCCCCccccCeeecCCCCeEeCCCC-----C
Q 008860 302 EFHTEESPQAILKSTDGSLSVKTNK----G--TVDGFSHVMFATGRRPNTKNLGLEKVGVKMTKNGAIEVDEYS-----G 370 (551)
Q Consensus 302 ~i~~~~~v~~i~~~~~~~~~V~~~~----G--~~i~~d~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~-----~ 370 (551)
+++++++|+++..++++...|.+.+ | +++++|.||+|+|++|+++++ + .+++++ +|+|.||+++ +
T Consensus 200 ~i~~~~~v~~i~~~~~~v~~v~~~~~~~~g~~~~i~~D~vv~a~G~~p~~~~~--~-~~l~~~-~G~i~vd~~~~~~~~~ 275 (320)
T 1trb_A 200 ILHTNRTLEEVTGDQMGVTGVRLRDTQNSDNIESLDVAGLFVAIGHSPNTAIF--E-GQLELE-NGYIKVQSGIHGNATQ 275 (320)
T ss_dssp EEECSCEEEEEEECSSSEEEEEEECCTTCCCCEEEECSEEEECSCEEESCGGG--T-TTSCEE-TTEECCCCSSSSCTTB
T ss_pred EEEcCceeEEEEcCCCceEEEEEEeccCCCceEEEEcCEEEEEeCCCCChHHh--c-cccccc-CceEEECCCccccccc
Confidence 9999999999988765544466644 4 579999999999999999874 3 467778 8999999997 7
Q ss_pred CCCCcEEEeCcCCCC-CCChHHHHHhHHHHHHHHc
Q 008860 371 TAVPSIWAVGDVTDR-INLTPVALMEGGALAKTLF 404 (551)
Q Consensus 371 t~~~~vya~GD~~~~-~~~~~~A~~~g~~aa~~i~ 404 (551)
|+.|+|||+|||+.. +..+..|..||+.||.+|.
T Consensus 276 t~~~~vya~GD~~~~~~~~~~~A~~~g~~aa~~i~ 310 (320)
T 1trb_A 276 TSIPGVFAAGDVMDHIYRQAITSAGTGCMAALDAE 310 (320)
T ss_dssp CSSTTEEECGGGGCSSSCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCEEEcccccCCcchhhhhhhccHHHHHHHHH
Confidence 999999999999997 4788999999999999985
|
| >1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 | Back alignment and structure |
|---|
Probab=100.00 E-value=9.8e-36 Score=297.48 Aligned_cols=280 Identities=19% Similarity=0.316 Sum_probs=213.3
Q ss_pred CccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhhccCCCccc
Q 008860 72 DFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDESNGFGWKY 151 (551)
Q Consensus 72 ~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~~ 151 (551)
+|||+|||||++|+++|..|++.|++|+||| + ..||.|.....++. +.
T Consensus 1 ~~dvvIIG~G~aGl~aA~~l~~~g~~v~li~----------~-~~gG~~~~~~~~~~---------------~~------ 48 (310)
T 1fl2_A 1 AYDVLIVGSGPAGAAAAIYSARKGIRTGLMG----------E-RFGGQILDTVDIEN---------------YI------ 48 (310)
T ss_dssp CEEEEEECCSHHHHHHHHHHHTTTCCEEEEC----------S-STTGGGGGCCEECC---------------BT------
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCcEEEEe----------C-CCCceecccccccc---------------cc------
Confidence 3899999999999999999999999999998 3 36788764322220 00
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEe-EEEEecC-------CEEEE-cCEEEEeCeEEEcCCCCCC
Q 008860 152 GTEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIEG-RGKIVDP-------HTVDV-DGKLYSARHILISVGGRPF 222 (551)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~i~~-------~~v~v-~g~~~~~d~lviAtG~~p~ 222 (551)
..+..+...+ ...+...+.+.+++++.+ ++..++. ..+.+ +++.+.||++|+|||++|.
T Consensus 49 -~~~~~~~~~~-----------~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~~~lv~AtG~~~~ 116 (310)
T 1fl2_A 49 -SVPKTEGQKL-----------AGALKVHVDEYDVDVIDSQSASKLIPAAVEGGLHQIETASGAVLKARSIIVATGAKWR 116 (310)
T ss_dssp -TBSSEEHHHH-----------HHHHHHHHHTSCEEEECSCCEEEEECCSSTTCCEEEEETTSCEEEEEEEEECCCEEEC
T ss_pred -CcCCCCHHHH-----------HHHHHHHHHHcCCeEEccCEEEEEEecccCCceEEEEECCCCEEEeCEEEECcCCCcC
Confidence 0011122222 222334556779999988 7777743 24455 5668999999999999999
Q ss_pred CCCCCCCCc-----eecchhhhcCCCCCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCCCCCHHHHHHHHHHHH
Q 008860 223 IPDIPGSEY-----AIDSDAALDLPSKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRDFVAEQMS 297 (551)
Q Consensus 223 ~p~i~g~~~-----~~~~~~~~~~~~~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~ 297 (551)
.|++||.+. ++.+.........+++++|||+|++|+|+|..|++.+.+|+++++.+.+. +++ .+.+.++
T Consensus 117 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~--~~~----~~~~~l~ 190 (310)
T 1fl2_A 117 NMNVPGEDQYRTKGVTYCPHCDGPLFKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEMK--ADQ----VLQDKLR 190 (310)
T ss_dssp CCCCTTTTTTBTTTEESCHHHHGGGGBTCEEEEECCSHHHHHHHHHHHTTBSEEEEECSSSSCC--SCH----HHHHHHH
T ss_pred CCCCCChhhcccceeEEeccCcHhhcCCCEEEEECCCHHHHHHHHHHHHhCCEEEEEEeCcccC--ccH----HHHHHHh
Confidence 888998642 33333322222347899999999999999999999999999999988763 343 3455666
Q ss_pred h-cCcEEEcCcccEEEEEcCCceEEEEEC---CCe--EEEeeEEEEecCcCCCCCCCCccccCeeecCCCCeEeCCCCCC
Q 008860 298 L-RGIEFHTEESPQAILKSTDGSLSVKTN---KGT--VDGFSHVMFATGRRPNTKNLGLEKVGVKMTKNGAIEVDEYSGT 371 (551)
Q Consensus 298 ~-~Gv~i~~~~~v~~i~~~~~~~~~V~~~---~G~--~i~~d~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~t 371 (551)
+ .||+++++++++++..+++....|.+. +|+ ++++|.||+|+|+.|+++++ +. .++++++|+|.||+++||
T Consensus 191 ~~~gv~v~~~~~v~~i~~~~~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l--~~-~l~~~~~g~i~vd~~~~t 267 (310)
T 1fl2_A 191 SLKNVDIILNAQTTEVKGDGSKVVGLEYRDRVSGDIHNIELAGIFVQIGLLPNTNWL--EG-AVERNRMGEIIIDAKCET 267 (310)
T ss_dssp TCTTEEEESSEEEEEEEESSSSEEEEEEEETTTCCEEEEECSEEEECSCEEESCGGG--TT-TSCBCTTSCBCCCTTCBC
T ss_pred hCCCeEEecCCceEEEEcCCCcEEEEEEEECCCCcEEEEEcCEEEEeeCCccCchHH--hc-cccccCCCcEEcCCCCcc
Confidence 6 699999999999998765553345554 353 68999999999999999874 44 377888899999999999
Q ss_pred CCCcEEEeCcCCCCC-CChHHHHHhHHHHHHHHc
Q 008860 372 AVPSIWAVGDVTDRI-NLTPVALMEGGALAKTLF 404 (551)
Q Consensus 372 ~~~~vya~GD~~~~~-~~~~~A~~~g~~aa~~i~ 404 (551)
+.|+|||+|||+..+ +.+..|+.||+.+|.||.
T Consensus 268 ~~~~vya~GD~~~~~~~~~~~A~~~g~~aa~~i~ 301 (310)
T 1fl2_A 268 NVKGVFAAGDCTTVPYKQIIIATGEGAKASLSAF 301 (310)
T ss_dssp SSTTEEECSTTBSCSSCCHHHHHHHHHHHHHHHH
T ss_pred CCCCEEEeecccCCcchhhhhhHhhHHHHHHHHH
Confidence 999999999999975 678899999999999986
|
| >2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-36 Score=302.13 Aligned_cols=288 Identities=18% Similarity=0.225 Sum_probs=215.7
Q ss_pred CCccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhhccCCCcc
Q 008860 71 YDFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDESNGFGWK 150 (551)
Q Consensus 71 ~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~ 150 (551)
.++||+|||||++|+++|..|++.|++|+|||+ ...+||.|.+. .|++.+ +.
T Consensus 4 ~~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~---------~~~~gg~~~~~--~~~~~~-----------------~~ 55 (335)
T 2zbw_A 4 DHTDVLIVGAGPTGLFAGFYVGMRGLSFRFVDP---------LPEPGGQLTAL--YPEKYI-----------------YD 55 (335)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHHTTCCEEEEES---------SSSSCHHHHHT--CTTSEE-----------------CC
T ss_pred CcCcEEEECCCHHHHHHHHHHHhCCCCEEEEeC---------CCCCCCeeecc--CCCcee-----------------ec
Confidence 358999999999999999999999999999993 45678887532 222110 00
Q ss_pred cCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEe-EEEEecC--CE--EEE-cCEEEEeCeEEEcCCC---CC
Q 008860 151 YGTEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIEG-RGKIVDP--HT--VDV-DGKLYSARHILISVGG---RP 221 (551)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~i~~--~~--v~v-~g~~~~~d~lviAtG~---~p 221 (551)
....+.+.+..+.. .+.+.+.+.+++++.+ .+..++. .. +.+ ++..+.||+||+|||+ .|
T Consensus 56 ~~~~~~~~~~~~~~-----------~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~v~~~~g~~~~~~~lv~AtG~~~~~p 124 (335)
T 2zbw_A 56 VAGFPKVYAKDLVK-----------GLVEQVAPFNPVYSLGERAETLEREGDLFKVTTSQGNAYTAKAVIIAAGVGAFEP 124 (335)
T ss_dssp STTCSSEEHHHHHH-----------HHHHHHGGGCCEEEESCCEEEEEEETTEEEEEETTSCEEEEEEEEECCTTSEEEE
T ss_pred cCCCCCCCHHHHHH-----------HHHHHHHHcCCEEEeCCEEEEEEECCCEEEEEECCCCEEEeCEEEECCCCCCCCC
Confidence 01112222333222 2223344557877655 4544432 23 333 5668999999999998 57
Q ss_pred CCCCCCCCCce-----ec-chhhhcCCCCCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCCCCCHHHHHHHHHH
Q 008860 222 FIPDIPGSEYA-----ID-SDAALDLPSKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRDFVAEQ 295 (551)
Q Consensus 222 ~~p~i~g~~~~-----~~-~~~~~~~~~~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~ 295 (551)
..|+++|.+.. +. ..+... ..+++++|||+|.+|+|+|..|.+.|.+|+++++.+.+++ .++..+.+.+.
T Consensus 125 ~~~~i~g~~~~~~~~~~~~~~~~~~--~~~~~v~viG~G~~g~e~a~~l~~~g~~V~~v~~~~~~~~--~~~~~~~l~~~ 200 (335)
T 2zbw_A 125 RRIGAPGEREFEGRGVYYAVKSKAE--FQGKRVLIVGGGDSAVDWALNLLDTARRITLIHRRPQFRA--HEASVKELMKA 200 (335)
T ss_dssp CCCCCTTTTTTBTTTEESSCSCGGG--GTTCEEEEECSSHHHHHHHHHTTTTSSEEEEECSSSSCCS--CHHHHHHHHHH
T ss_pred CCCCCCChhhccCcEEEEecCchhh--cCCCEEEEECCCHHHHHHHHHHHhhCCEEEEEEcCCccCc--cHHHHHHHHhc
Confidence 77788886432 11 111111 1478999999999999999999999999999999987655 46677888889
Q ss_pred HHhcCcEEEcCcccEEEEEcCCceEEEEEC---CC--eEEEeeEEEEecCcCCCCCCCCccccCeeecCCCCeEeCCCCC
Q 008860 296 MSLRGIEFHTEESPQAILKSTDGSLSVKTN---KG--TVDGFSHVMFATGRRPNTKNLGLEKVGVKMTKNGAIEVDEYSG 370 (551)
Q Consensus 296 l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~---~G--~~i~~d~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~ 370 (551)
+++.||++++++.|++++.+ ++...|.+. +| +++++|.||+|+|++|+.++ ++..+++++ +|+|.||+++|
T Consensus 201 l~~~gv~v~~~~~v~~i~~~-~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~--l~~~~~~~~-~g~i~vd~~~~ 276 (335)
T 2zbw_A 201 HEEGRLEVLTPYELRRVEGD-ERVRWAVVFHNQTQEELALEVDAVLILAGYITKLGP--LANWGLALE-KNKIKVDTTMA 276 (335)
T ss_dssp HHTTSSEEETTEEEEEEEES-SSEEEEEEEETTTCCEEEEECSEEEECCCEEEECGG--GGGSCCCEE-TTEEECCTTCB
T ss_pred cccCCeEEecCCcceeEccC-CCeeEEEEEECCCCceEEEecCEEEEeecCCCCchH--hhhcceecc-CCeeeeCCCCC
Confidence 99999999999999999884 332356654 67 57999999999999999887 677888877 68999999999
Q ss_pred CCCCcEEEeCcCCCC---CCChHHHHHhHHHHHHHHcC
Q 008860 371 TAVPSIWAVGDVTDR---INLTPVALMEGGALAKTLFQ 405 (551)
Q Consensus 371 t~~~~vya~GD~~~~---~~~~~~A~~~g~~aa~~i~g 405 (551)
|+.|+|||+|||+.. ++++..|..||+++|+||.+
T Consensus 277 t~~~~vya~GD~~~~~~~~~~~~~A~~~g~~aa~~i~~ 314 (335)
T 2zbw_A 277 TSIPGVYACGDIVTYPGKLPLIVLGFGEAAIAANHAAA 314 (335)
T ss_dssp CSSTTEEECSTTEECTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCEEEeccccccCcchhhhhhhHHHHHHHHHHHHH
Confidence 999999999999963 57899999999999999874
|
| >3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.4e-36 Score=296.63 Aligned_cols=273 Identities=17% Similarity=0.239 Sum_probs=209.5
Q ss_pred CccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhhccCCCccc
Q 008860 72 DFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDESNGFGWKY 151 (551)
Q Consensus 72 ~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~~ 151 (551)
++||+|||||++|+++|..|++.|++|+|||+ ....+.+... ...+
T Consensus 2 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~----------~~~~~~~~~~------------------------~~~~ 47 (297)
T 3fbs_A 2 KFDVIIIGGSYAGLSAALQLGRARKNILLVDA----------GERRNRFASH------------------------SHGF 47 (297)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTTCCEEEEEC----------CCCGGGGCSC------------------------CCSS
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCCEEEEeC----------CCcccccchh------------------------hcCC
Confidence 48999999999999999999999999999992 2222211100 0000
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhC-CeEEEEeEEEEecCC----EEEE-cCEEEEeCeEEEcCCCCCCCCC
Q 008860 152 GTEPQHDWSTLIANKNAELQRLTGIYKNILINA-GITLIEGRGKIVDPH----TVDV-DGKLYSARHILISVGGRPFIPD 225 (551)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~i~~~----~v~v-~g~~~~~d~lviAtG~~p~~p~ 225 (551)
......+...+..+. .+.+.+. +++++.+++..++.. .+.+ +++.+.||+||+|||+.|..|+
T Consensus 48 ~~~~~~~~~~~~~~~-----------~~~~~~~~~v~~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vviAtG~~~~~~~ 116 (297)
T 3fbs_A 48 LGQDGKAPGEIIAEA-----------RRQIERYPTIHWVEGRVTDAKGSFGEFIVEIDGGRRETAGRLILAMGVTDELPE 116 (297)
T ss_dssp TTCTTCCHHHHHHHH-----------HHHHTTCTTEEEEESCEEEEEEETTEEEEEETTSCEEEEEEEEECCCCEEECCC
T ss_pred cCCCCCCHHHHHHHH-----------HHHHHhcCCeEEEEeEEEEEEEcCCeEEEEECCCCEEEcCEEEECCCCCCCCCC
Confidence 111223333333322 2334444 789988887776532 4555 6778999999999999999999
Q ss_pred CCCCCc-----eecchhhhcCCCCCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCCCCCHHHHHHHHHHHHhcC
Q 008860 226 IPGSEY-----AIDSDAALDLPSKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRDFVAEQMSLRG 300 (551)
Q Consensus 226 i~g~~~-----~~~~~~~~~~~~~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~G 300 (551)
+||.+. +++..........+++++|||+|.+|+|+|..|.+.| +|+++.+.+. .+.+.+.+.+++.|
T Consensus 117 ~~g~~~~~~~~~~~~~~~~~~~~~~~~v~vvG~G~~~~e~a~~l~~~g-~v~~v~~~~~-------~~~~~~~~~l~~~g 188 (297)
T 3fbs_A 117 IAGLRERWGSAVFHCPYCHGYELDQGKIGVIAASPMAIHHALMLPDWG-ETTFFTNGIV-------EPDADQHALLAARG 188 (297)
T ss_dssp CBTTGGGBTTTEESCHHHHTGGGTTCEEEEECCSTTHHHHHHHGGGTS-EEEEECTTTC-------CCCHHHHHHHHHTT
T ss_pred CCCchhhcCCeeEEcccCcchhhcCCEEEEEecCccHHHHHHHhhhcC-cEEEEECCCC-------CCCHHHHHHHHHCC
Confidence 999753 2333222222234789999999999999999999999 9999998765 22345677889999
Q ss_pred cEEEcCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCcCCCCCCCCccccCeeec--CCC-CeEeCCCCCCCCCcEE
Q 008860 301 IEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNTKNLGLEKVGVKMT--KNG-AIEVDEYSGTAVPSIW 377 (551)
Q Consensus 301 v~i~~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~~~~l~l~~~gl~~~--~~G-~i~vd~~~~t~~~~vy 377 (551)
|+++. ++|+++..++ .|.+.+|+++++|.|++|+|+.|+.++ ++..+++++ ++| ++.||++++|+.|+||
T Consensus 189 v~i~~-~~v~~i~~~~----~v~~~~g~~~~~D~vi~a~G~~p~~~~--~~~~g~~~~~~~~G~~i~vd~~~~t~~~~vy 261 (297)
T 3fbs_A 189 VRVET-TRIREIAGHA----DVVLADGRSIALAGLFTQPKLRITVDW--IEKLGCAVEEGPMGSTIVTDPMKQTTARGIF 261 (297)
T ss_dssp CEEEC-SCEEEEETTE----EEEETTSCEEEESEEEECCEEECCCSC--HHHHTCCEEEETTEEEECCCTTCBCSSTTEE
T ss_pred cEEEc-ceeeeeecCC----eEEeCCCCEEEEEEEEEccCcccCchh--HHhcCCccccCCCCceEEeCCCCccCCCCEE
Confidence 99996 8999997532 588899999999999999999999987 677788776 457 8999999999999999
Q ss_pred EeCcCCCCCCChHHHHHhHHHHHHHHc
Q 008860 378 AVGDVTDRINLTPVALMEGGALAKTLF 404 (551)
Q Consensus 378 a~GD~~~~~~~~~~A~~~g~~aa~~i~ 404 (551)
|+|||++.++.+..|..||++||.||.
T Consensus 262 a~GD~~~~~~~~~~A~~~g~~aa~~i~ 288 (297)
T 3fbs_A 262 ACGDVARPAGSVALAVGDGAMAGAAAH 288 (297)
T ss_dssp ECSGGGCTTCCHHHHHHHHHHHHHHHH
T ss_pred EEeecCCchHHHHHHHHhHHHHHHHHH
Confidence 999999989999999999999999985
|
| >2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-35 Score=298.94 Aligned_cols=285 Identities=21% Similarity=0.283 Sum_probs=212.5
Q ss_pred CCCCccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhhccCCC
Q 008860 69 SHYDFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDESNGFG 148 (551)
Q Consensus 69 ~~~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g 148 (551)
+..++||+|||||++|+++|..|++.|++|+||| +...||.|...... ..++.+.
T Consensus 11 ~~~~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie----------~~~~gg~~~~~~~~---------------~~~~~~~ 65 (335)
T 2a87_A 11 HHPVRDVIVIGSGPAGYTAALYAARAQLAPLVFE----------GTSFGGALMTTTDV---------------ENYPGFR 65 (335)
T ss_dssp CCCCEEEEEECCHHHHHHHHHHHHHTTCCCEEEC----------CSSCSCGGGSCSCB---------------CCSTTCT
T ss_pred cCCcCCEEEECCCHHHHHHHHHHHhCCCeEEEEe----------cCCCCCceeccchh---------------hhcCCCC
Confidence 3456899999999999999999999999999999 45678887542211 0111111
Q ss_pred cccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEeEEEEecC---CEE-EE-cCEEEEeCeEEEcCCCCCCC
Q 008860 149 WKYGTEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIEGRGKIVDP---HTV-DV-DGKLYSARHILISVGGRPFI 223 (551)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~i~~---~~v-~v-~g~~~~~d~lviAtG~~p~~ 223 (551)
..+....+..+ +.+.+.+.+++++.+++..++. ..+ .+ +++.+.||+||+|||+.|..
T Consensus 66 ------~~~~~~~~~~~-----------l~~~~~~~~v~~~~~~v~~i~~~~~~~v~~~~~g~~~~~d~lviAtG~~~~~ 128 (335)
T 2a87_A 66 ------NGITGPELMDE-----------MREQALRFGADLRMEDVESVSLHGPLKSVVTADGQTHRARAVILAMGAAARY 128 (335)
T ss_dssp ------TCBCHHHHHHH-----------HHHHHHHTTCEEECCCEEEEECSSSSEEEEETTSCEEEEEEEEECCCEEECC
T ss_pred ------CCCCHHHHHHH-----------HHHHHHHcCCEEEEeeEEEEEeCCcEEEEEeCCCCEEEeCEEEECCCCCccC
Confidence 11223332222 2234456689998887666654 456 55 56789999999999999999
Q ss_pred CCCCCCCc-----eecchhhhcCCCCCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCCCCCHHHHHHHHHHHHh
Q 008860 224 PDIPGSEY-----AIDSDAALDLPSKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRDFVAEQMSL 298 (551)
Q Consensus 224 p~i~g~~~-----~~~~~~~~~~~~~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~ 298 (551)
|++||.+. +++..........+++++|||+|.+|+|+|..|.+.|.+|+++++.+.+.. .+.+ ..+.+++
T Consensus 129 ~~i~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~l~~~~~~~~~--~~~~---~~~~~~~ 203 (335)
T 2a87_A 129 LQVPGEQELLGRGVSSCATCDGFFFRDQDIAVIGGGDSAMEEATFLTRFARSVTLVHRRDEFRA--SKIM---LDRARNN 203 (335)
T ss_dssp CCCTHHHHTBTTTEESCHHHHGGGGTTCEEEEECSSHHHHHHHHHHTTTCSEEEEECSSSSCSS--CTTH---HHHHHHC
T ss_pred CCCCchHhccCCceEEeeccchhhcCCCEEEEECCCHHHHHHHHHHHHhCCeEEEEEcCCcCCc--cHHH---HHHHhcc
Confidence 98888532 332222222223578999999999999999999999999999999887643 2222 1244567
Q ss_pred cCcEEEcCcccEEEEEcCCceEEEEEC---CC--eEEEeeEEEEecCcCCCCCCCCccccCeeecCCCCeEeCCC-CCCC
Q 008860 299 RGIEFHTEESPQAILKSTDGSLSVKTN---KG--TVDGFSHVMFATGRRPNTKNLGLEKVGVKMTKNGAIEVDEY-SGTA 372 (551)
Q Consensus 299 ~Gv~i~~~~~v~~i~~~~~~~~~V~~~---~G--~~i~~d~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~-~~t~ 372 (551)
.||+++++++|++++.+++. ..|.+. +| +++++|.||+|+|++|+++++ + .+++++++|+|.||++ ++|+
T Consensus 204 ~gV~v~~~~~v~~i~~~~~~-~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~--~-~~l~~~~~G~i~vd~~~~~t~ 279 (335)
T 2a87_A 204 DKIRFLTNHTVVAVDGDTTV-TGLRVRDTNTGAETTLPVTGVFVAIGHEPRSGLV--R-EAIDVDPDGYVLVQGRTTSTS 279 (335)
T ss_dssp TTEEEECSEEEEEEECSSSC-CEEEEEEETTSCCEEECCSCEEECSCEEECCTTT--B-TTBCBCTTSCBCCSTTSSBCS
T ss_pred CCcEEEeCceeEEEecCCcE-eEEEEEEcCCCceEEeecCEEEEccCCccChhHh--h-cccccCCCccEEeCCCCCccC
Confidence 89999999999999876532 234443 45 579999999999999999874 3 5788888899999996 6899
Q ss_pred CCcEEEeCcCCCC-CCChHHHHHhHHHHHHHHc
Q 008860 373 VPSIWAVGDVTDR-INLTPVALMEGGALAKTLF 404 (551)
Q Consensus 373 ~~~vya~GD~~~~-~~~~~~A~~~g~~aa~~i~ 404 (551)
.|+|||+|||++. ++.+..|..||+++|.||.
T Consensus 280 ~~~iya~GD~~~~~~~~~~~A~~~g~~aA~~i~ 312 (335)
T 2a87_A 280 LPGVFAAGDLVDRTYRQAVTAAGSGCAAAIDAE 312 (335)
T ss_dssp STTEEECGGGTCCSCCCHHHHHHHHHHHHHHHH
T ss_pred CCCEEEeeecCCccHHHHHHHHHhHHHHHHHHH
Confidence 9999999999986 5788999999999999985
|
| >3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-35 Score=302.39 Aligned_cols=291 Identities=19% Similarity=0.203 Sum_probs=215.6
Q ss_pred CCCCccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhhccCCC
Q 008860 69 SHYDFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDESNGFG 148 (551)
Q Consensus 69 ~~~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g 148 (551)
|+.++||+|||||++|+++|..|++.|++|+|||+ ...+||.|.+. .|.+.+
T Consensus 11 ~~~~~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~---------~~~~gg~~~~~--~~~~~~----------------- 62 (360)
T 3ab1_A 11 HHDMRDLTIIGGGPTGIFAAFQCGMNNISCRIIES---------MPQLGGQLAAL--YPEKHI----------------- 62 (360)
T ss_dssp --CCEEEEEECCSHHHHHHHHHHHHTTCCEEEECS---------SSSSCHHHHHT--CTTSEE-----------------
T ss_pred cCCCCCEEEECCCHHHHHHHHHHHhCCCCEEEEec---------CCCCCCccccc--CCCccc-----------------
Confidence 44568999999999999999999999999999993 45678877532 221100
Q ss_pred cccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEe-EEEEecC-----CEEEE-cCEEEEeCeEEEcCCC--
Q 008860 149 WKYGTEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIEG-RGKIVDP-----HTVDV-DGKLYSARHILISVGG-- 219 (551)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~i~~-----~~v~v-~g~~~~~d~lviAtG~-- 219 (551)
+.....+.++...+.. .+.+.+.+.+++++.+ .+..++. ..+.+ +++.+.||+||+|||+
T Consensus 63 ~~~~~~~~~~~~~~~~-----------~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~li~AtG~~~ 131 (360)
T 3ab1_A 63 YDVAGFPEVPAIDLVE-----------SLWAQAERYNPDVVLNETVTKYTKLDDGTFETRTNTGNVYRSRAVLIAAGLGA 131 (360)
T ss_dssp CCSTTCSSEEHHHHHH-----------HHHHHHHTTCCEEECSCCEEEEEECTTSCEEEEETTSCEEEEEEEEECCTTCS
T ss_pred ccCCCCCCCCHHHHHH-----------HHHHHHHHhCCEEEcCCEEEEEEECCCceEEEEECCCcEEEeeEEEEccCCCc
Confidence 0001111222233222 2233455667887655 4554432 13444 5668999999999998
Q ss_pred -CCCCCCCCC-CCc-----eec-chhhhcCCCCCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCCCCCHHHHHH
Q 008860 220 -RPFIPDIPG-SEY-----AID-SDAALDLPSKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRDF 291 (551)
Q Consensus 220 -~p~~p~i~g-~~~-----~~~-~~~~~~~~~~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~ 291 (551)
.|..|+++| .+. ++. ..+... ..+++++|||+|.+|+|+|..|.+.|.+|+++++.+.+.+ .++..+.
T Consensus 132 ~~~~~~~i~g~~~~~~~~~v~~~~~~~~~--~~~~~vvVvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~~--~~~~~~~ 207 (360)
T 3ab1_A 132 FEPRKLPQLGNIDHLTGSSVYYAVKSVED--FKGKRVVIVGGGDSALDWTVGLIKNAASVTLVHRGHEFQG--HGKTAHE 207 (360)
T ss_dssp CCBCCCGGGCCCTTTBTTTEESSCSCGGG--GTTCEEEEECSSHHHHHHHHHTTTTSSEEEEECSSSSCSS--CSHHHHS
T ss_pred CCCCCCCCCCchhhCcCceEEEecCCHHH--cCCCcEEEECCCHHHHHHHHHHHhcCCEEEEEEcCCCCCC--CHHHHHH
Confidence 566667787 432 111 111111 1378999999999999999999999999999999887655 2456777
Q ss_pred HHHHHHhcCcEEEcCcccEEEEEcCCceEEEEE--CCC--eEEEeeEEEEecCcCCCCCCCCccccCeeecCCCCeEeCC
Q 008860 292 VAEQMSLRGIEFHTEESPQAILKSTDGSLSVKT--NKG--TVDGFSHVMFATGRRPNTKNLGLEKVGVKMTKNGAIEVDE 367 (551)
Q Consensus 292 l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~--~~G--~~i~~d~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~ 367 (551)
+.+.+++.||+++++++|+++..++++...|.+ .+| +++++|.||+|+|+.|+.++ ++..+++++ +|+|.||+
T Consensus 208 l~~~~~~~gv~i~~~~~v~~i~~~~~~v~~v~~~~~~g~~~~i~~D~vi~a~G~~p~~~~--l~~~~~~~~-~g~i~vd~ 284 (360)
T 3ab1_A 208 VERARANGTIDVYLETEVASIEESNGVLTRVHLRSSDGSKWTVEADRLLILIGFKSNLGP--LARWDLELY-ENALVVDS 284 (360)
T ss_dssp SHHHHHHTSEEEESSEEEEEEEEETTEEEEEEEEETTCCEEEEECSEEEECCCBCCSCGG--GGGSSCCEE-TTEEECCT
T ss_pred HHHHhhcCceEEEcCcCHHHhccCCCceEEEEEEecCCCeEEEeCCEEEECCCCCCCHHH--HHhhccccc-cCeeeecC
Confidence 888889999999999999999887554334555 477 57999999999999999987 667788877 68999999
Q ss_pred CCCCCCCcEEEeCcCCC---CCCChHHHHHhHHHHHHHHcC
Q 008860 368 YSGTAVPSIWAVGDVTD---RINLTPVALMEGGALAKTLFQ 405 (551)
Q Consensus 368 ~~~t~~~~vya~GD~~~---~~~~~~~A~~~g~~aa~~i~g 405 (551)
++||++|+|||+|||+. .++++..|..||+++|.||.+
T Consensus 285 ~~~t~~~~vya~GD~~~~~~~~~~~~~A~~~g~~aa~~i~~ 325 (360)
T 3ab1_A 285 HMKTSVDGLYAAGDIAYYPGKLKIIQTGLSEATMAVRHSLS 325 (360)
T ss_dssp TSBCSSTTEEECSTTEECTTCCCSHHHHHHHHHHHHHHHHH
T ss_pred CCcCCCCCEEEecCccCCCCccceeehhHHHHHHHHHHHHh
Confidence 99999999999999996 357899999999999999874
|
| >3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-35 Score=297.95 Aligned_cols=290 Identities=20% Similarity=0.202 Sum_probs=216.2
Q ss_pred CCCCccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhhccCCC
Q 008860 69 SHYDFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDESNGFG 148 (551)
Q Consensus 69 ~~~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g 148 (551)
+.+++||+|||||++|+++|..|++.|++|+|||+. .......||.|.....+. .++.+.
T Consensus 19 ~~~~~~vvIIG~G~aGl~aA~~l~~~g~~v~vie~~-----~~~~~~~gg~~~~~~~~~---------------~~~~~~ 78 (338)
T 3itj_A 19 SHVHNKVTIIGSGPAAHTAAIYLARAEIKPILYEGM-----MANGIAAGGQLTTTTEIE---------------NFPGFP 78 (338)
T ss_dssp --CEEEEEEECCSHHHHHHHHHHHHTTCCCEEECCS-----SBTTBCTTCGGGGSSEEC---------------CSTTCT
T ss_pred CCCCCCEEEECcCHHHHHHHHHHHHCCCCEEEEecC-----CCCCCCcCcccccchhhc---------------ccCCCc
Confidence 445799999999999999999999999999999931 011235777765422110 011110
Q ss_pred cccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEeEEEEecC--CEEEE------cCEEEEeCeEEEcCCCC
Q 008860 149 WKYGTEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIEGRGKIVDP--HTVDV------DGKLYSARHILISVGGR 220 (551)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~i~~--~~v~v------~g~~~~~d~lviAtG~~ 220 (551)
....... +...+...+.+.+++++.+++..++. ..+.+ ++..+.||+||+|||+.
T Consensus 79 ------~~~~~~~-----------~~~~~~~~~~~~gv~i~~~~v~~i~~~~~~~~v~~~~~~~~~~~~~d~vvlAtG~~ 141 (338)
T 3itj_A 79 ------DGLTGSE-----------LMDRMREQSTKFGTEIITETVSKVDLSSKPFKLWTEFNEDAEPVTTDAIILATGAS 141 (338)
T ss_dssp ------TCEEHHH-----------HHHHHHHHHHHTTCEEECSCEEEEECSSSSEEEEETTCSSSCCEEEEEEEECCCEE
T ss_pred ------ccCCHHH-----------HHHHHHHHHHHcCCEEEEeEEEEEEEcCCEEEEEEEecCCCcEEEeCEEEECcCCC
Confidence 0111122 22233345566799998887666653 23333 45789999999999999
Q ss_pred CCCCCCCCCCc-----eecchhhhcC--CCCCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCCCCCHHHHHHHH
Q 008860 221 PFIPDIPGSEY-----AIDSDAALDL--PSKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRDFVA 293 (551)
Q Consensus 221 p~~p~i~g~~~-----~~~~~~~~~~--~~~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~ 293 (551)
|..|++||.+. +......... ...+++++|||+|.+|+|+|..|.+.|.+|+++++.+.+++ .+.+.
T Consensus 142 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~vvG~G~~g~e~a~~l~~~g~~v~~v~~~~~~~~------~~~~~ 215 (338)
T 3itj_A 142 AKRMHLPGEETYWQKGISACAVCDGAVPIFRNKPLAVIGGGDSACEEAQFLTKYGSKVFMLVRKDHLRA------STIMQ 215 (338)
T ss_dssp ECCCCCTTHHHHBTTTEESCHHHHTTSGGGTTSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSCCS------CHHHH
T ss_pred cCCCCCCCchhccCccEEEchhcccchhhcCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEEcCCccCC------CHHHH
Confidence 99999998542 3333222222 23478999999999999999999999999999999887654 34455
Q ss_pred HHHHhc-CcEEEcCcccEEEEEcCCceEEEEECC-----CeEEEeeEEEEecCcCCCCCCCCccccCeeecCCCCeEe-C
Q 008860 294 EQMSLR-GIEFHTEESPQAILKSTDGSLSVKTNK-----GTVDGFSHVMFATGRRPNTKNLGLEKVGVKMTKNGAIEV-D 366 (551)
Q Consensus 294 ~~l~~~-Gv~i~~~~~v~~i~~~~~~~~~V~~~~-----G~~i~~d~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~v-d 366 (551)
+.+.+. ||++++++.|++++.++++...|.+.+ ++++++|.||+|+|+.|+..+ ++. +++++++|++.| |
T Consensus 216 ~~l~~~~gv~i~~~~~v~~i~~~~~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~--~~~-~l~~~~~G~i~v~~ 292 (338)
T 3itj_A 216 KRAEKNEKIEILYNTVALEAKGDGKLLNALRIKNTKKNEETDLPVSGLFYAIGHTPATKI--VAG-QVDTDEAGYIKTVP 292 (338)
T ss_dssp HHHHHCTTEEEECSEEEEEEEESSSSEEEEEEEETTTTEEEEEECSEEEECSCEEECCGG--GBT-TBCBCTTSCBCCCT
T ss_pred HHHHhcCCeEEeecceeEEEEcccCcEEEEEEEECCCCceEEEEeCEEEEEeCCCCChhH--hhC-ceEecCCCcEEEcC
Confidence 556555 999999999999998776544566655 457999999999999999987 344 899999999995 8
Q ss_pred CCCCCCCCcEEEeCcCCCC-CCChHHHHHhHHHHHHHHc
Q 008860 367 EYSGTAVPSIWAVGDVTDR-INLTPVALMEGGALAKTLF 404 (551)
Q Consensus 367 ~~~~t~~~~vya~GD~~~~-~~~~~~A~~~g~~aa~~i~ 404 (551)
++++|+.|+|||+|||+.. ++.+..|+.||+.||.||.
T Consensus 293 ~~~~t~~~~vya~GD~~~~~~~~~~~A~~~g~~aa~~i~ 331 (338)
T 3itj_A 293 GSSLTSVPGFFAAGDVQDSKYRQAITSAGSGCMAALDAE 331 (338)
T ss_dssp TSSBCSSTTEEECGGGGCSSCCCHHHHHHHHHHHHHHHH
T ss_pred cccccCCCCEEEeeccCCCCccceeeehhhhHHHHHHHH
Confidence 8999999999999999985 6888999999999999986
|
| >3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-35 Score=297.83 Aligned_cols=284 Identities=18% Similarity=0.260 Sum_probs=211.9
Q ss_pred CccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhhccCCCccc
Q 008860 72 DFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDESNGFGWKY 151 (551)
Q Consensus 72 ~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~~ 151 (551)
++||+|||||+||+++|..|++.|++|+|||+ ...+||.|.+ +.|...+ +..
T Consensus 7 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~---------~~~~gG~~~~--~~~~~~~-----------------~~~ 58 (332)
T 3lzw_A 7 VYDITIIGGGPVGLFTAFYGGMRQASVKIIES---------LPQLGGQLSA--LYPEKYI-----------------YDV 58 (332)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEECS---------SSSSCHHHHH--HCTTSEE-----------------CCS
T ss_pred cceEEEECCCHHHHHHHHHHHHCCCCEEEEEc---------CCCCCceehh--cCCCceE-----------------ecc
Confidence 58999999999999999999999999999993 4567887742 1221100 001
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEe-EEEEecC--C---EEEEcCEEEEeCeEEEcCCC---CCC
Q 008860 152 GTEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIEG-RGKIVDP--H---TVDVDGKLYSARHILISVGG---RPF 222 (551)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~i~~--~---~v~v~g~~~~~d~lviAtG~---~p~ 222 (551)
.+.+......+ ...+...+.+.+++++.+ ++..++. . .+.++...+.||+||+|||+ .|.
T Consensus 59 ~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~v~~~~g~~~~d~vVlAtG~~~~~p~ 127 (332)
T 3lzw_A 59 AGFPKIRAQEL-----------INNLKEQMAKFDQTICLEQAVESVEKQADGVFKLVTNEETHYSKTVIITAGNGAFKPR 127 (332)
T ss_dssp TTCSSEEHHHH-----------HHHHHHHHTTSCCEEECSCCEEEEEECTTSCEEEEESSEEEEEEEEEECCTTSCCEEC
T ss_pred CCCCCCCHHHH-----------HHHHHHHHHHhCCcEEccCEEEEEEECCCCcEEEEECCCEEEeCEEEECCCCCcCCCC
Confidence 11111222222 222334455668888753 4555432 2 45554445999999999999 888
Q ss_pred CCCCCCCCce----ecchhhhcCCC-CCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCCCCCHHHHHHHHHHHH
Q 008860 223 IPDIPGSEYA----IDSDAALDLPS-KPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRDFVAEQMS 297 (551)
Q Consensus 223 ~p~i~g~~~~----~~~~~~~~~~~-~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~ 297 (551)
.|++||.+.+ ... ...+... .+++++|||+|.+|+|+|..|.+.+.+|+++++.+.+.+ .+. ..+.|+
T Consensus 128 ~~~~~g~~~~~g~~~~~-~~~~~~~~~~~~v~vvG~g~~~~e~a~~l~~~~~~v~~~~~~~~~~~-~~~-----~~~~l~ 200 (332)
T 3lzw_A 128 KLELENAEQYEGKNLHY-FVDDLQKFAGRRVAILGGGDSAVDWALMLEPIAKEVSIIHRRDKFRA-HEH-----SVENLH 200 (332)
T ss_dssp CCCCTTGGGGBTTTEES-SCSCGGGGBTCEEEEECSSHHHHHHHHHHTTTBSEEEEECSSSSCSS-CHH-----HHHHHH
T ss_pred CCCCCChhhccCceEEE-ecCCHHHcCCCEEEEECCCHhHHHHHHHHHhhCCeEEEEEecCcCCc-cHH-----HHHHHh
Confidence 8889987531 111 2222222 378999999999999999999999999999999887643 222 234578
Q ss_pred hcCcEEEcCcccEEEEEcCCceEEEEECC-----CeEEEeeEEEEecCcCCCCCCCCccccCeeecCCCCeEeCCCCCCC
Q 008860 298 LRGIEFHTEESPQAILKSTDGSLSVKTNK-----GTVDGFSHVMFATGRRPNTKNLGLEKVGVKMTKNGAIEVDEYSGTA 372 (551)
Q Consensus 298 ~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~-----G~~i~~d~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~t~ 372 (551)
+.||+++.++.++++..+++. ..|.+.+ ++++++|.||+|+|+.|+.++ ++..++++ ++|+|.||+++||+
T Consensus 201 ~~gv~~~~~~~v~~i~~~~~~-~~v~~~~~~~g~~~~~~~D~vv~a~G~~p~~~~--~~~~~~~~-~~g~i~vd~~~~t~ 276 (332)
T 3lzw_A 201 ASKVNVLTPFVPAELIGEDKI-EQLVLEEVKGDRKEILEIDDLIVNYGFVSSLGP--IKNWGLDI-EKNSIVVKSTMETN 276 (332)
T ss_dssp HSSCEEETTEEEEEEECSSSC-CEEEEEETTSCCEEEEECSEEEECCCEECCCGG--GGGSSCCE-ETTEEECCTTSBCS
T ss_pred cCCeEEEeCceeeEEecCCce-EEEEEEecCCCceEEEECCEEEEeeccCCCchH--HhhcCccc-cCCeEEeCCCCcee
Confidence 899999999999999876553 5566654 457999999999999999987 77888888 67899999999999
Q ss_pred CCcEEEeCcCC---CCCCChHHHHHhHHHHHHHHcC
Q 008860 373 VPSIWAVGDVT---DRINLTPVALMEGGALAKTLFQ 405 (551)
Q Consensus 373 ~~~vya~GD~~---~~~~~~~~A~~~g~~aa~~i~g 405 (551)
.|+|||+|||+ +.++++..|..||+++|.||..
T Consensus 277 ~~~vya~GD~~~~~~~~~~~~~A~~~g~~aa~~i~~ 312 (332)
T 3lzw_A 277 IEGFFAAGDICTYEGKVNLIASGFGEAPTAVNNAKA 312 (332)
T ss_dssp STTEEECGGGEECTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred cCCEEEccceecCCCCcceEeeehhhHHHHHHHHHH
Confidence 99999999999 4578899999999999999863
|
| >4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-36 Score=318.36 Aligned_cols=288 Identities=19% Similarity=0.289 Sum_probs=210.5
Q ss_pred CCccEEEECCChHHHHHHHHHHhCCCcEEEEcc-CCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhhccCCCc
Q 008860 71 YDFDLFTIGAGSGGVRASRFAANFGASVAICEL-PFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDESNGFGW 149 (551)
Q Consensus 71 ~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~-~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~ 149 (551)
.+.+|||||||+||+++|..|++.+++|+|||+ +|+.+++......+|+
T Consensus 41 ~KprVVIIGgG~AGl~~A~~L~~~~~~VtLId~~~~~~~~PlL~~va~G~------------------------------ 90 (502)
T 4g6h_A 41 DKPNVLILGSGWGAISFLKHIDTKKYNVSIISPRSYFLFTPLLPSAPVGT------------------------------ 90 (502)
T ss_dssp SSCEEEEECSSHHHHHHHHHSCTTTCEEEEEESSSEEECGGGGGGTTTTS------------------------------
T ss_pred CCCCEEEECCcHHHHHHHHHhhhCCCcEEEECCCCCcccccchhHHhhcc------------------------------
Confidence 356899999999999999999999999999993 1111111111111111
Q ss_pred ccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEeEEEEecC--CEEEE---------------------cCE
Q 008860 150 KYGTEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIEGRGKIVDP--HTVDV---------------------DGK 206 (551)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~i~~--~~v~v---------------------~g~ 206 (551)
++..++....... ....+.+++++.+++..+|. +++.+ ++.
T Consensus 91 -------l~~~~i~~p~~~~---------~~~~~~~v~~~~~~v~~ID~~~k~V~l~~~~~~~~~~~~~~~~~~~~~~~~ 154 (502)
T 4g6h_A 91 -------VDEKSIIEPIVNF---------ALKKKGNVTYYEAEATSINPDRNTVTIKSLSAVSQLYQPENHLGLHQAEPA 154 (502)
T ss_dssp -------SCGGGGEEEHHHH---------HTTCSSCEEEEEEEEEEEEGGGTEEEEEEEEEEEECSSSCCCCCCCTTCCE
T ss_pred -------ccHHHhhhhHHHH---------HHhhcCCeEEEEEEEEEEEhhhCEEEEeecccceeecccccccccccCCce
Confidence 1111100000000 00123479999999888864 45554 256
Q ss_pred EEEeCeEEEcCCCCCCCCCCCCCC-ce---ecchhhhcC--------------CC------CCCeEEEEcCcHHHHHHHH
Q 008860 207 LYSARHILISVGGRPFIPDIPGSE-YA---IDSDAALDL--------------PS------KPEKIAIVGGGYIALEFAG 262 (551)
Q Consensus 207 ~~~~d~lviAtG~~p~~p~i~g~~-~~---~~~~~~~~~--------------~~------~~~~vvViG~G~~g~e~a~ 262 (551)
++.||+||||||++|+.+++||.+ +. .+.++...+ .. ...+++|||+|++|+|+|.
T Consensus 155 ~i~YD~LViAtGs~~~~~~ipG~~e~a~~l~t~~dA~~ir~~l~~~~e~a~~~~~~~~~~~~~~~vvVvGgG~tGvE~A~ 234 (502)
T 4g6h_A 155 EIKYDYLISAVGAEPNTFGIPGVTDYGHFLKEIPNSLEIRRTFAANLEKANLLPKGDPERRRLLSIVVVGGGPTGVEAAG 234 (502)
T ss_dssp EEECSEEEECCCCEECCTTCTTHHHHCEECSSHHHHHHHHHHHHHHHHHHHHSCTTCHHHHHHTEEEEECCSHHHHHHHH
T ss_pred EEeCCEEEEcCCcccccCCccCcccccCCCCCHHHHHHHHHHHHHHHHHHhcccccchhhccccceEEECCCcchhhhHH
Confidence 899999999999999999999963 22 233332211 10 1247999999999999999
Q ss_pred HHHhC--------------CCeEEEEeecCccCCCCCHHHHHHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEECCCe
Q 008860 263 IFSGL--------------TSEVHVFIRQKKVLRGFDEDIRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTNKGT 328 (551)
Q Consensus 263 ~l~~~--------------g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~G~ 328 (551)
.|.++ ..+|+++++.+++++.+++++++.+++.|+++||++++++.|++++.+.. ...+...||+
T Consensus 235 ~l~~~~~~~l~~~~~~~~~~~~V~lve~~~~il~~~~~~~~~~~~~~L~~~GV~v~~~~~v~~v~~~~~-~~~~~~~dg~ 313 (502)
T 4g6h_A 235 ELQDYVHQDLRKFLPALAEEVQIHLVEALPIVLNMFEKKLSSYAQSHLENTSIKVHLRTAVAKVEEKQL-LAKTKHEDGK 313 (502)
T ss_dssp HHHHHHHHTHHHHCHHHHHHCEEEEECSSSSSSTTSCHHHHHHHHHHHHHTTCEEETTEEEEEECSSEE-EEEEECTTSC
T ss_pred HHHHHHHHHHHhhcccccccceeEEeccccccccCCCHHHHHHHHHHHHhcceeeecCceEEEEeCCce-EEEEEecCcc
Confidence 88764 36899999999999999999999999999999999999999999964321 2334556663
Q ss_pred ----EEEeeEEEEecCcCCCCCCCC-ccccCeeecCCCCeEeCCCCCC-CCCcEEEeCcCCCC--CCChHHHHHhHHHHH
Q 008860 329 ----VDGFSHVMFATGRRPNTKNLG-LEKVGVKMTKNGAIEVDEYSGT-AVPSIWAVGDVTDR--INLTPVALMEGGALA 400 (551)
Q Consensus 329 ----~i~~d~vi~a~G~~p~~~~l~-l~~~gl~~~~~G~i~vd~~~~t-~~~~vya~GD~~~~--~~~~~~A~~~g~~aa 400 (551)
++++|.||||+|..|+...-+ ....+...+.+|+|.||++||+ ++|||||+|||+.. +++++.|.+||+++|
T Consensus 314 ~~~~~i~ad~viwa~Gv~~~~~~~~l~~~~~~~~~~~g~I~Vd~~lq~~~~~~IfAiGD~a~~~~p~~a~~A~qqg~~~A 393 (502)
T 4g6h_A 314 ITEETIPYGTLIWATGNKARPVITDLFKKIPEQNSSKRGLAVNDFLQVKGSNNIFAIGDNAFAGLPPTAQVAHQEAEYLA 393 (502)
T ss_dssp EEEEEEECSEEEECCCEECCHHHHHHHHHSGGGTTCCSSEEBCTTSBBTTCSSEEECGGGEESSSCCCHHHHHHHHHHHH
T ss_pred cceeeeccCEEEEccCCcCCHHHHhHHHhccccccCCCceeECCccccCCCCCEEEEEcccCCCCCCchHHHHHHHHHHH
Confidence 699999999999999842100 2445666778899999999998 89999999999875 689999999999999
Q ss_pred HHHcC
Q 008860 401 KTLFQ 405 (551)
Q Consensus 401 ~~i~g 405 (551)
+||..
T Consensus 394 ~ni~~ 398 (502)
T 4g6h_A 394 KNFDK 398 (502)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99853
|
| >1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-34 Score=291.20 Aligned_cols=288 Identities=21% Similarity=0.207 Sum_probs=210.4
Q ss_pred CccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhhccCCCccc
Q 008860 72 DFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDESNGFGWKY 151 (551)
Q Consensus 72 ~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~~ 151 (551)
++||+|||||++|+++|..|++.|++|+|||+. .......||.|.....+ ...+.+.
T Consensus 8 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~-----~~~~~~~gg~~~~~~~~---------------~~~~~~~--- 64 (333)
T 1vdc_A 8 NTRLCIVGSGPAAHTAAIYAARAELKPLLFEGW-----MANDIAPGGQLTTTTDV---------------ENFPGFP--- 64 (333)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCCEEECCS-----SBTTBCTTCGGGGCSEE---------------CCSTTCT---
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCeEEEEecc-----CccccCCCceeeecccc---------------ccCCCCc---
Confidence 589999999999999999999999999999920 00014566665432110 0111110
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEeEEEEecC--C--EEEEcCEEEEeCeEEEcCCCCCCCCCCC
Q 008860 152 GTEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIEGRGKIVDP--H--TVDVDGKLYSARHILISVGGRPFIPDIP 227 (551)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~i~~--~--~v~v~g~~~~~d~lviAtG~~p~~p~i~ 227 (551)
..++...+. ..+.+.+.+.+++++.+++..++. . .+.+++..+.||+||+|||+.|..|++|
T Consensus 65 ---~~~~~~~~~-----------~~l~~~~~~~gv~~~~~~v~~i~~~~~~~~v~~~~~~~~~~~vv~A~G~~~~~~~~~ 130 (333)
T 1vdc_A 65 ---EGILGVELT-----------DKFRKQSERFGTTIFTETVTKVDFSSKPFKLFTDSKAILADAVILAIGAVAKRLSFV 130 (333)
T ss_dssp ---TCEEHHHHH-----------HHHHHHHHHTTCEEECCCCCEEECSSSSEEEECSSEEEEEEEEEECCCEEECCCCCB
T ss_pred ---cCCCHHHHH-----------HHHHHHHHHCCCEEEEeEEEEEEEcCCEEEEEECCcEEEcCEEEECCCCCcCCCCCC
Confidence 011222222 222334556789998877666543 2 4444778999999999999999998888
Q ss_pred CCCc---------eecchhhhcCC--CCCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCCCCCHHHHHHHHHHH
Q 008860 228 GSEY---------AIDSDAALDLP--SKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRDFVAEQM 296 (551)
Q Consensus 228 g~~~---------~~~~~~~~~~~--~~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l 296 (551)
|.+. +.+........ ..+++++|||+|.+|+|+|..|.+.|.+|+++++.+.+.. .+.+ ..+.+
T Consensus 131 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~~--~~~~---~~~~~ 205 (333)
T 1vdc_A 131 GSGEVLGGFWNRGISACAVCDGAAPIFRNKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDAFRA--SKIM---QQRAL 205 (333)
T ss_dssp TCSSSSSCCBTTTEESCHHHHTTSGGGTTSEEEEECCSHHHHHHHHHHTTTSSEEEEECSSSSCCS--CHHH---HHHHH
T ss_pred CccccccccccCcEEEeccCccchhhcCCCeEEEECCChHHHHHHHHHHhcCCeEEEEecCCcCCc--cHHH---HHHHH
Confidence 8643 12222222222 4578999999999999999999999999999999887532 2222 23456
Q ss_pred HhcCcEEEcCcccEEEEEcCC--ceEEEEEC---CC--eEEEeeEEEEecCcCCCCCCCCccccCeeecCCCCeEeCCC-
Q 008860 297 SLRGIEFHTEESPQAILKSTD--GSLSVKTN---KG--TVDGFSHVMFATGRRPNTKNLGLEKVGVKMTKNGAIEVDEY- 368 (551)
Q Consensus 297 ~~~Gv~i~~~~~v~~i~~~~~--~~~~V~~~---~G--~~i~~d~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~- 368 (551)
++.||+++++++|+++..+++ +...|.+. +| +++++|.||+|+|++|+.+++ + .+++++++|+|.||++
T Consensus 206 ~~~gv~i~~~~~v~~i~~~~~~~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~--~-~~l~~~~~G~i~vd~~~ 282 (333)
T 1vdc_A 206 SNPKIDVIWNSSVVEAYGDGERDVLGGLKVKNVVTGDVSDLKVSGLFFAIGHEPATKFL--D-GGVELDSDGYVVTKPGT 282 (333)
T ss_dssp TCTTEEEECSEEEEEEEESSSSSSEEEEEEEETTTCCEEEEECSEEEECSCEEESCGGG--T-TSSCBCTTSCBCCCTTS
T ss_pred hCCCeeEecCCceEEEeCCCCccceeeEEEEecCCCceEEEecCEEEEEeCCccchHHh--h-ccccccCCCCEEechhh
Confidence 788999999999999988764 42335553 45 579999999999999999874 3 4788888899999997
Q ss_pred CCCCCCcEEEeCcCCCC-CCChHHHHHhHHHHHHHHc
Q 008860 369 SGTAVPSIWAVGDVTDR-INLTPVALMEGGALAKTLF 404 (551)
Q Consensus 369 ~~t~~~~vya~GD~~~~-~~~~~~A~~~g~~aa~~i~ 404 (551)
++|+.|+|||+|||+.. ++.+..|..||+.||.+|.
T Consensus 283 ~~t~~~~vya~GD~~~~~~~~~~~A~~~g~~aa~~i~ 319 (333)
T 1vdc_A 283 TQTSVPGVFAAGDVQDKKYRQAITAAGTGCMAALDAE 319 (333)
T ss_dssp CBCSSTTEEECGGGGCSSCCCHHHHHHHHHHHHHHHH
T ss_pred cccCCCCEEEeeeccCCCchhHHHHHHhHHHHHHHHH
Confidence 58999999999999986 4788999999999999986
|
| >1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.4e-34 Score=303.85 Aligned_cols=281 Identities=19% Similarity=0.324 Sum_probs=215.2
Q ss_pred CCccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhhccCCCcc
Q 008860 71 YDFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDESNGFGWK 150 (551)
Q Consensus 71 ~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~ 150 (551)
..+||+|||||+||+++|.+|++.|++|+||| . ..||.|.....++. +.
T Consensus 211 ~~~dVvIIGgG~AGl~aA~~la~~G~~v~lie----------~-~~GG~~~~~~~~~~---------------~~----- 259 (521)
T 1hyu_A 211 DAYDVLIVGSGPAGAAAAVYSARKGIRTGLMG----------E-RFGGQVLDTVDIEN---------------YI----- 259 (521)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHHTTCCEEEEC----------S-STTGGGTTCSCBCC---------------BT-----
T ss_pred CcccEEEECCcHHHHHHHHHHHhCCCeEEEEE----------C-CCCCcccccccccc---------------cC-----
Confidence 46899999999999999999999999999999 3 36888764332220 00
Q ss_pred cCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEe-EEEEecC-------CEEEE-cCEEEEeCeEEEcCCCCC
Q 008860 151 YGTEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIEG-RGKIVDP-------HTVDV-DGKLYSARHILISVGGRP 221 (551)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~i~~-------~~v~v-~g~~~~~d~lviAtG~~p 221 (551)
..+......+. ..+...+.+.+++++.+ ++..++. +.+.+ ++..+.||++|+|||++|
T Consensus 260 --~~~~~~~~~l~-----------~~l~~~~~~~gv~v~~~~~v~~i~~~~~~~~~~~V~~~~g~~~~~d~vVlAtG~~~ 326 (521)
T 1hyu_A 260 --SVPKTEGQKLA-----------GALKAHVSDYDVDVIDSQSASKLVPAATEGGLHQIETASGAVLKARSIIIATGAKW 326 (521)
T ss_dssp --TBSSBCHHHHH-----------HHHHHHHHTSCEEEECSCCEEEEECCSSTTSCEEEEETTSCEEEEEEEEECCCEEE
T ss_pred --CCCCCCHHHHH-----------HHHHHHHHHcCCEEEcCCEEEEEEeccCCCceEEEEECCCCEEEcCEEEECCCCCc
Confidence 01112222222 22334456779999988 6777753 34555 677899999999999999
Q ss_pred CCCCCCCCCc-----eecchhhhcCCCCCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCCCCCHHHHHHHHHHH
Q 008860 222 FIPDIPGSEY-----AIDSDAALDLPSKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRDFVAEQM 296 (551)
Q Consensus 222 ~~p~i~g~~~-----~~~~~~~~~~~~~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l 296 (551)
..|++||.+. +..+.........+++|+|||+|++|+|+|..|++.|.+|+++++.+.+.. + ..+.+.+
T Consensus 327 ~~~~ipG~~~~~~~~v~~~~~~~~~~~~~k~V~ViGgG~~g~E~A~~L~~~g~~Vtlv~~~~~l~~--~----~~l~~~l 400 (521)
T 1hyu_A 327 RNMNVPGEDQYRTKGVTYCPHCDGPLFKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEMKA--D----QVLQDKV 400 (521)
T ss_dssp CCCCCTTTTTTTTTTEECCTTCCGGGGBTSEEEEECCSHHHHHHHHHHHHHBSEEEEECSSSSCCS--C----HHHHHHH
T ss_pred CCCCCCChhhhcCceEEEeecCchhhcCCCeEEEECCCHHHHHHHHHHHhhCCEEEEEEeCcccCc--C----HHHHHHH
Confidence 9888998642 222222111112478999999999999999999999999999999887653 3 3456667
Q ss_pred Hh-cCcEEEcCcccEEEEEcCCceEEEEEC---CCe--EEEeeEEEEecCcCCCCCCCCccccCeeecCCCCeEeCCCCC
Q 008860 297 SL-RGIEFHTEESPQAILKSTDGSLSVKTN---KGT--VDGFSHVMFATGRRPNTKNLGLEKVGVKMTKNGAIEVDEYSG 370 (551)
Q Consensus 297 ~~-~Gv~i~~~~~v~~i~~~~~~~~~V~~~---~G~--~i~~d~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~ 370 (551)
++ .||++++++.++++..++++...+.+. +|+ ++++|.|++|+|+.|+++++ +. .++++++|+|.||+++|
T Consensus 401 ~~~~gV~v~~~~~v~~i~~~~~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~~pn~~~l--~~-~l~~~~~G~I~Vd~~~~ 477 (521)
T 1hyu_A 401 RSLKNVDIILNAQTTEVKGDGSKVVGLEYRDRVSGDIHSVALAGIFVQIGLLPNTHWL--EG-ALERNRMGEIIIDAKCE 477 (521)
T ss_dssp TTCTTEEEECSEEEEEEEECSSSEEEEEEEETTTCCEEEEECSEEEECCCEEESCGGG--TT-TSCBCTTSCBCCCTTCB
T ss_pred hcCCCcEEEeCCEEEEEEcCCCcEEEEEEEeCCCCceEEEEcCEEEECcCCCCCchHH--hh-hhccCCCCcEEeCCCCC
Confidence 77 699999999999998865553356554 353 68999999999999999874 44 47788899999999999
Q ss_pred CCCCcEEEeCcCCCCC-CChHHHHHhHHHHHHHHc
Q 008860 371 TAVPSIWAVGDVTDRI-NLTPVALMEGGALAKTLF 404 (551)
Q Consensus 371 t~~~~vya~GD~~~~~-~~~~~A~~~g~~aa~~i~ 404 (551)
|++|+|||+|||+..+ +.+..|+.||+.||.+++
T Consensus 478 ts~p~VfA~GD~~~~~~~~~~~A~~~g~~aa~~i~ 512 (521)
T 1hyu_A 478 TSVKGVFAAGDCTTVPYKQIIIATGEGAKASLSAF 512 (521)
T ss_dssp CSSTTEEECSTTBCCSSCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCEEEeecccCCCcceeeehHHhHHHHHHHHH
Confidence 9999999999999964 788999999999999986
|
| >3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.5e-34 Score=290.52 Aligned_cols=311 Identities=18% Similarity=0.213 Sum_probs=211.6
Q ss_pred CccEEEECCChHHHHHHHHHHhCCC-cEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhhccCCCcc
Q 008860 72 DFDLFTIGAGSGGVRASRFAANFGA-SVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDESNGFGWK 150 (551)
Q Consensus 72 ~~dVvIIGgG~aGl~aA~~l~~~G~-~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~ 150 (551)
++||+|||||++|+++|..|++.|. +|+||| +..+||.|.++... ..+....+ ....+++.
T Consensus 4 ~~~vvIIGaG~aGl~aA~~l~~~g~~~v~lie----------~~~~Gg~~~~~~~~---~~~~~~~~-----~~~~~g~~ 65 (369)
T 3d1c_A 4 HHKVAIIGAGAAGIGMAITLKDFGITDVIILE----------KGTVGHSFKHWPKS---TRTITPSF-----TSNGFGMP 65 (369)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCCEEEEC----------SSSTTHHHHTSCTT---CBCSSCCC-----CCGGGTCC
T ss_pred cCcEEEECcCHHHHHHHHHHHHcCCCcEEEEe----------cCCCCCccccCccc---ccccCcch-----hcccCCch
Confidence 5899999999999999999999999 999999 33388888654221 00000000 00111110
Q ss_pred cCCCCCCChHHHHHHHHH--HHHHHHHHHHHHHHhCCeEEEEeE-EEEecC----CEEEEcCEEEEeCeEEEcCCCCCCC
Q 008860 151 YGTEPQHDWSTLIANKNA--ELQRLTGIYKNILINAGITLIEGR-GKIVDP----HTVDVDGKLYSARHILISVGGRPFI 223 (551)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~v~~~~~~-~~~i~~----~~v~v~g~~~~~d~lviAtG~~p~~ 223 (551)
.......++...+..... ....+...+...+++.+++++.+. +..++. ..+..++..+.||+||+|||+.+.
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~d~vVlAtG~~~~- 144 (369)
T 3d1c_A 66 DMNAISMDTSPAFTFNEEHISGETYAEYLQVVANHYELNIFENTVVTNISADDAYYTIATTTETYHADYIFVATGDYNF- 144 (369)
T ss_dssp CTTCSSTTCCHHHHHCCSSCBHHHHHHHHHHHHHHTTCEEECSCCEEEEEECSSSEEEEESSCCEEEEEEEECCCSTTS-
T ss_pred hhhhccccccccccccccCCCHHHHHHHHHHHHHHcCCeEEeCCEEEEEEECCCeEEEEeCCCEEEeCEEEECCCCCCc-
Confidence 000011111111100000 001122333445566789988763 554542 244444446899999999998765
Q ss_pred CCCCCCCceecchhhhcCCC-CCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCCC-------CCHHHHHHHHHH
Q 008860 224 PDIPGSEYAIDSDAALDLPS-KPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRG-------FDEDIRDFVAEQ 295 (551)
Q Consensus 224 p~i~g~~~~~~~~~~~~~~~-~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~~-------~~~~~~~~l~~~ 295 (551)
|.+|+ ...++..++..... ..++|+|||+|.+|+|+|..|.+.|.+|+++++.+.+++. +++...+.+.+.
T Consensus 145 p~ip~-~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~a~~l~~~g~~V~lv~~~~~~~~~~~d~~~~~~~~~~~~l~~~ 223 (369)
T 3d1c_A 145 PKKPF-KYGIHYSEIEDFDNFNKGQYVVIGGNESGFDAAYQLAKNGSDIALYTSTTGLNDPDADPSVRLSPYTRQRLGNV 223 (369)
T ss_dssp BCCCS-SSCEEGGGCSCGGGSCSSEEEEECCSHHHHHHHHHHHHTTCEEEEECC----------CTTSCCHHHHHHHHHH
T ss_pred cCCCC-CceechhhcCChhhcCCCEEEEECCCcCHHHHHHHHHhcCCeEEEEecCCCCCCCCCCCCccCCHHHHHHHHHH
Confidence 56666 44455544444333 3569999999999999999999999999999998877632 456777889999
Q ss_pred HHhcC-cEEEcCcccEEEEEcCCceEEEEECCCeEEE-eeEEEEecCcCCCCCCCCccccCeeecCCCCeEeCCC-CCCC
Q 008860 296 MSLRG-IEFHTEESPQAILKSTDGSLSVKTNKGTVDG-FSHVMFATGRRPNTKNLGLEKVGVKMTKNGAIEVDEY-SGTA 372 (551)
Q Consensus 296 l~~~G-v~i~~~~~v~~i~~~~~~~~~V~~~~G~~i~-~d~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~-~~t~ 372 (551)
+++.| |+++.++.|.+++.++++ +.|.+.+|+++. +|.||+|+|+.|+.++ +.+.+++ +++|++.||++ ++|+
T Consensus 224 l~~~g~v~~~~~~~v~~i~~~~~~-~~v~~~~g~~~~~~d~vi~a~G~~~~~~~--~~~~~~~-~~~g~i~v~~~~~~t~ 299 (369)
T 3d1c_A 224 IKQGARIEMNVHYTVKDIDFNNGQ-YHISFDSGQSVHTPHEPILATGFDATKNP--IVQQLFV-TTNQDIKLTTHDESTR 299 (369)
T ss_dssp HHTTCCEEEECSCCEEEEEEETTE-EEEEESSSCCEEESSCCEECCCBCGGGSH--HHHHHSC-CTTSCCCBCTTSBBSS
T ss_pred HhhCCcEEEecCcEEEEEEecCCc-eEEEecCCeEeccCCceEEeeccCCccch--hhhhhcc-CCCCCEEechhhcccC
Confidence 99997 999999999999765554 678888998775 5999999999999976 3444566 77889999986 6789
Q ss_pred CCcEEEeCcCCCCC----CChHHHHHhHHHHHHHHcCC
Q 008860 373 VPSIWAVGDVTDRI----NLTPVALMEGGALAKTLFQA 406 (551)
Q Consensus 373 ~~~vya~GD~~~~~----~~~~~A~~~g~~aa~~i~g~ 406 (551)
.|+|||+|||+..+ .....+..||+++|++|.+.
T Consensus 300 ~~~v~a~GD~~~~~~~~~~~~~~~~~~a~~~a~~l~~~ 337 (369)
T 3d1c_A 300 YPNIFMIGATVENDNAKLCYIYKFRARFAVLAHLLTQR 337 (369)
T ss_dssp STTEEECSTTCCCSSCCCCSHHHHGGGHHHHHHHHHHH
T ss_pred CCCeEEeccccccCCeeEEEEehhhHHHHHHHHHHhcc
Confidence 99999999999853 23456778999999999874
|
| >4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-32 Score=279.43 Aligned_cols=298 Identities=20% Similarity=0.297 Sum_probs=203.3
Q ss_pred CccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhhccCCCccc
Q 008860 72 DFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDESNGFGWKY 151 (551)
Q Consensus 72 ~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~~ 151 (551)
++||+|||||++|+++|..|++.|++|+|||+ ...+||.|.+. .|...+... .....++.+....
T Consensus 3 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~---------~~~~gg~~~~~--~~~~~~~~~----~~~~~~~~~~~~~ 67 (357)
T 4a9w_A 3 SVDVVVIGGGQSGLSAGYFLRRSGLSYVILDA---------EASPGGAWQHA--WHSLHLFSP----AGWSSIPGWPMPA 67 (357)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHSSCCEEEECC---------SSSSSGGGGGS--CTTCBCSSC----GGGSCCSSSCCCC
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCCEEEEEC---------CCCCCCcccCC--CCCcEecCc----hhhhhCCCCCCCC
Confidence 58999999999999999999999999999993 45788888652 222111100 1111122221111
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEe-EEEEe--cCCEEE-E--cCEEEEeCeEEEcCC--CCCCC
Q 008860 152 GTEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIEG-RGKIV--DPHTVD-V--DGKLYSARHILISVG--GRPFI 223 (551)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~i--~~~~v~-v--~g~~~~~d~lviAtG--~~p~~ 223 (551)
..........+ ...+...+++.++++..+ ++..+ +...+. + ++..+.||+||+||| +.|..
T Consensus 68 ~~~~~~~~~~~-----------~~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~v~~~~g~~~~d~vV~AtG~~~~~~~ 136 (357)
T 4a9w_A 68 SQGPYPARAEV-----------LAYLAQYEQKYALPVLRPIRVQRVSHFGERLRVVARDGRQWLARAVISATGTWGEAYT 136 (357)
T ss_dssp CSSSSCBHHHH-----------HHHHHHHHHHTTCCEECSCCEEEEEEETTEEEEEETTSCEEEEEEEEECCCSGGGBCC
T ss_pred CccCCCCHHHH-----------HHHHHHHHHHcCCEEEcCCEEEEEEECCCcEEEEEeCCCEEEeCEEEECCCCCCCCCC
Confidence 10111111222 222334455668887665 44443 234444 4 444899999999999 57788
Q ss_pred CCCCCCCc----eecchhhhcCC-CCCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeec-CccCCC--CCHHHHHHHHHH
Q 008860 224 PDIPGSEY----AIDSDAALDLP-SKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQ-KKVLRG--FDEDIRDFVAEQ 295 (551)
Q Consensus 224 p~i~g~~~----~~~~~~~~~~~-~~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~-~~~l~~--~~~~~~~~l~~~ 295 (551)
|++||.+. ..+..+..... ..+++++|||+|.+|+|+|..|.+.+ +|+++.+. +.+++. ....+.+.+.+.
T Consensus 137 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~g~e~a~~l~~~~-~v~~v~~~~~~~~~~~~~~~~~~~~~~~~ 215 (357)
T 4a9w_A 137 PEYQGLESFAGIQLHSAHYSTPAPFAGMRVAIIGGGNSGAQILAEVSTVA-ETTWITQHEPAFLADDVDGRVLFERATER 215 (357)
T ss_dssp CCCTTGGGCCSEEEEGGGCCCSGGGTTSEEEEECCSHHHHHHHHHHTTTS-EEEEECSSCCCBCCTTCCTHHHHTC----
T ss_pred CCCCCccccCCcEEEeccCCChhhcCCCEEEEECCCcCHHHHHHHHHhhC-CEEEEECCCCeecchhhcCccHHHHHHHH
Confidence 99998643 22222222222 24689999999999999999999998 69999988 455554 234444333333
Q ss_pred HH----------------------------hcCcEEEcCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCcCCCCCC
Q 008860 296 MS----------------------------LRGIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNTKN 347 (551)
Q Consensus 296 l~----------------------------~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~~~~ 347 (551)
+. +.|+ +..+..+.++.. + .+.+.+|+++++|.||+|+|++|++++
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-i~~~~~v~~~~~--~---~v~~~~g~~i~~D~vi~a~G~~p~~~~ 289 (357)
T 4a9w_A 216 WKAQQEGREPDLPPGGFGDIVMVPPVLDARARGV-LAAVPPPARFSP--T---GMQWADGTERAFDAVIWCTGFRPALSH 289 (357)
T ss_dssp ------------------CBCCCHHHHHHHHTTC-CCEECCCSEEET--T---EEECTTSCEEECSEEEECCCBCCCCGG
T ss_pred HhccccccCCCcccccccCcccChhHHHHHhcCc-eEEecCcceEeC--C---eeEECCCCEecCCEEEECCCcCCCCcc
Confidence 32 3444 555666777753 2 278889999999999999999999887
Q ss_pred CCccccCeeecCCCCeEeCCC--CCCCCCcEEEeC--cCCC-CCCChHHHHHhHHHHHHHHcC
Q 008860 348 LGLEKVGVKMTKNGAIEVDEY--SGTAVPSIWAVG--DVTD-RINLTPVALMEGGALAKTLFQ 405 (551)
Q Consensus 348 l~l~~~gl~~~~~G~i~vd~~--~~t~~~~vya~G--D~~~-~~~~~~~A~~~g~~aa~~i~g 405 (551)
++..++. +++|+|.||++ ++|+.|||||+| ||+. .+.....|..||+++|.||..
T Consensus 290 --l~~~gl~-~~~G~i~vd~~~l~~t~~~~vya~Gd~d~~~~~~~~~~~A~~~g~~~a~~i~~ 349 (357)
T 4a9w_A 290 --LKGLDLV-TPQGQVEVDGSGLRALAVPSVWLLGYGDWNGMASATLIGVTRYAREAVRQVTA 349 (357)
T ss_dssp --GTTTTCB-CTTSCBCBCTTSCBBSSCTTEEECSSCGGGSTTCSSTTTHHHHHHHHHHHHHH
T ss_pred --cCccccc-CCCCCccccCCcccCCCCCCeEEeccccccccchhhhhhhHHHHHHHHHHHHH
Confidence 6788888 88899999999 899999999999 6676 357778899999999999863
|
| >2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-33 Score=294.29 Aligned_cols=276 Identities=20% Similarity=0.305 Sum_probs=201.9
Q ss_pred CCccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhhccCCCcc
Q 008860 71 YDFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDESNGFGWK 150 (551)
Q Consensus 71 ~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~ 150 (551)
..+||+|||||+||+++|..|++.|++|+|||+ ...+||.+.+ | +| .|
T Consensus 121 ~~~~V~IIGgGpAGl~aA~~L~~~G~~V~v~e~---------~~~~GG~l~~-g-ip------------------~~--- 168 (456)
T 2vdc_G 121 LGLSVGVIGAGPAGLAAAEELRAKGYEVHVYDR---------YDRMGGLLVY-G-IP------------------GF--- 168 (456)
T ss_dssp CCCCEEEECCSHHHHHHHHHHHHHTCCEEEECS---------SSSCSTHHHH-T-SC------------------TT---
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEec---------cCCCCCeeee-c-CC------------------Cc---
Confidence 468999999999999999999999999999993 4557776431 1 11 00
Q ss_pred cCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEeEEEEecCCEEEEcCEEEEeCeEEEcCCCC-CCCCCCCCC
Q 008860 151 YGTEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIEGRGKIVDPHTVDVDGKLYSARHILISVGGR-PFIPDIPGS 229 (551)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~i~~~~v~v~g~~~~~d~lviAtG~~-p~~p~i~g~ 229 (551)
... ..+.. ...+++.+.|++++.+... + ..+.++...+.||+||+|||+. |+.+++||.
T Consensus 169 -----~~~-~~~~~-----------~~~~~l~~~gv~~~~~~~v--~-~~v~~~~~~~~~d~vvlAtG~~~~~~~~ipG~ 228 (456)
T 2vdc_G 169 -----KLE-KSVVE-----------RRVKLLADAGVIYHPNFEV--G-RDASLPELRRKHVAVLVATGVYKARDIKAPGS 228 (456)
T ss_dssp -----TSC-HHHHH-----------HHHHHHHHTTCEEETTCCB--T-TTBCHHHHHSSCSEEEECCCCCEECCTTCSCC
T ss_pred -----cCC-HHHHH-----------HHHHHHHHCCcEEEeCCEe--c-cEEEhhHhHhhCCEEEEecCCCCCCCCCCCCC
Confidence 001 11111 1234556779998876421 1 1222222235799999999986 677888886
Q ss_pred C--ceecchhhhc------------------CCCCCCeEEEEcCcHHHHHHHHHHHhCCC-eEEEEeecCcc-CCCCCHH
Q 008860 230 E--YAIDSDAALD------------------LPSKPEKIAIVGGGYIALEFAGIFSGLTS-EVHVFIRQKKV-LRGFDED 287 (551)
Q Consensus 230 ~--~~~~~~~~~~------------------~~~~~~~vvViG~G~~g~e~a~~l~~~g~-~Vtlv~~~~~~-l~~~~~~ 287 (551)
+ .+++..+++. ....+++|+|||+|.+|+|+|..+.+.|. +|+++.|.+.. ++..+.+
T Consensus 229 ~~~gv~~a~~~l~~~~~~~~~~~~~~~~~g~~~~~gk~VvVIGgG~~a~d~A~~~~r~Ga~~Vtiv~r~~~~~~p~~~~e 308 (456)
T 2vdc_G 229 GLGNIVAALDYLTTSNKVSLGDTVEAYENGSLNAAGKHVVVLGGGDTAMDCVRTAIRQGATSVKCLYRRDRKNMPGSQRE 308 (456)
T ss_dssp TTTTEEEHHHHHHHHHHHHCTTTCSSCCTTCSCCCCSEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSCSTTCSSCHHH
T ss_pred cCCCcEEHHHHHHHhhhhhcccccccccccccccCCCEEEEECCChhHHHHHHHHHHcCCCEEEEEEeCCccCCCCCHHH
Confidence 4 3443322211 12457899999999999999999999998 59999998875 5544433
Q ss_pred HHHHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEE---------C---------CC--eEEEeeEEEEecCcCCCCCC
Q 008860 288 IRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKT---------N---------KG--TVDGFSHVMFATGRRPNTKN 347 (551)
Q Consensus 288 ~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~---------~---------~G--~~i~~d~vi~a~G~~p~~~~ 347 (551)
.+.+++.||++++++.++++..++ .+..|.+ . +| .++++|.||+|+|+.|++..
T Consensus 309 -----~~~~~~~Gv~~~~~~~~~~i~~~g-~v~~v~~~~~~~~~~d~~G~~~~~~~~g~~~~i~aD~Vi~A~G~~p~~~~ 382 (456)
T 2vdc_G 309 -----VAHAEEEGVEFIWQAAPEGFTGDT-VVTGVRAVRIHLGVADATGRQTPQVIEGSEFTVQADLVIKALGFEPEDLP 382 (456)
T ss_dssp -----HHHHHHTTCEEECCSSSCCEEEEE-EEETTEEEEEEEEEEEECTTCCEEEEEEEEEEEECSEEEECSCEECCCHH
T ss_pred -----HHHHHHCCCEEEeCCCceEEeCCC-cEEEEEEEEEEecccCCcCCccccccCCcEEEEECCEEEECCCCCCCcch
Confidence 345778899999999999997532 1111111 1 23 36899999999999998752
Q ss_pred CCccccCeeecCCCCeEeCCC-CCCCCCcEEEeCcCCCCCCChHHHHHhHHHHHHHHc
Q 008860 348 LGLEKVGVKMTKNGAIEVDEY-SGTAVPSIWAVGDVTDRINLTPVALMEGGALAKTLF 404 (551)
Q Consensus 348 l~l~~~gl~~~~~G~i~vd~~-~~t~~~~vya~GD~~~~~~~~~~A~~~g~~aa~~i~ 404 (551)
+.++..+++++++|+|.||++ +||+.|+|||+|||+..+.++..|+.||+.||.+|.
T Consensus 383 ~~l~~~gl~~~~~G~i~vd~~~~~Ts~~~VfA~GD~~~g~~~v~~A~~~G~~aA~~i~ 440 (456)
T 2vdc_G 383 NAFDEPELKVTRWGTLLVDHRTKMTNMDGVFAAGDIVRGASLVVWAIRDGRDAAEGIH 440 (456)
T ss_dssp HHHHSTTSCBCTTSSBCCCTTTCBCSSTTEEECGGGGSSCCSHHHHHHHHHHHHHHHH
T ss_pred hhcccCCeeECCCCCEEECCCCCcCCCCCEEEeccccCCchHHHHHHHHHHHHHHHHH
Confidence 116778899999999999997 999999999999999989999999999999999986
|
| >3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-32 Score=288.50 Aligned_cols=281 Identities=16% Similarity=0.174 Sum_probs=204.1
Q ss_pred CCCccEEEECCChHHHHHHHHHHh---CCCcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhhccC
Q 008860 70 HYDFDLFTIGAGSGGVRASRFAAN---FGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDESNG 146 (551)
Q Consensus 70 ~~~~dVvIIGgG~aGl~aA~~l~~---~G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~ 146 (551)
..++||||||||++|+++|..|++ .|++|+|||+ .. ... ..|....+...
T Consensus 2 ~~m~~vvIIGgG~aGl~aA~~L~~~~~~g~~Vtlie~----------~~---~~~---~~~~~~~~~~g----------- 54 (437)
T 3sx6_A 2 RGSAHVVILGAGTGGMPAAYEMKEALGSGHEVTLISA----------ND---YFQ---FVPSNPWVGVG----------- 54 (437)
T ss_dssp TTSCEEEEECCSTTHHHHHHHHHHHHGGGSEEEEECS----------SS---EEE---CGGGHHHHHHT-----------
T ss_pred CCCCcEEEECCcHHHHHHHHHHhccCCCcCEEEEEeC----------CC---CCc---ccCCccccccC-----------
Confidence 345799999999999999999999 8999999992 11 000 01211110000
Q ss_pred CCcccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEeEEEEecC--CEEEE-cCEEEEeCeEEEcCCCCCCC
Q 008860 147 FGWKYGTEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIEGRGKIVDP--HTVDV-DGKLYSARHILISVGGRPFI 223 (551)
Q Consensus 147 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~i~~--~~v~v-~g~~~~~d~lviAtG~~p~~ 223 (551)
..+.. .+...+.+.+.+.+++++.+++..++. ..+.+ +++.+.||+||+|||++|+.
T Consensus 55 ---------~~~~~-----------~~~~~l~~~~~~~gv~~~~~~v~~id~~~~~V~~~~g~~i~~d~lviAtG~~~~~ 114 (437)
T 3sx6_A 55 ---------WKERD-----------DIAFPIRHYVERKGIHFIAQSAEQIDAEAQNITLADGNTVHYDYLMIATGPKLAF 114 (437)
T ss_dssp ---------SSCHH-----------HHEEECHHHHHTTTCEEECSCEEEEETTTTEEEETTSCEEECSEEEECCCCEECG
T ss_pred ---------ccCHH-----------HHHHHHHHHHHHCCCEEEEeEEEEEEcCCCEEEECCCCEEECCEEEECCCCCcCc
Confidence 00111 111122345566799999988888876 46666 67789999999999999999
Q ss_pred CCCCCCCc-------eecchhhhcCCC------CCCeEEEEcCcHH----H--HHHH----HHHHhCCCe-----EEEEe
Q 008860 224 PDIPGSEY-------AIDSDAALDLPS------KPEKIAIVGGGYI----A--LEFA----GIFSGLTSE-----VHVFI 275 (551)
Q Consensus 224 p~i~g~~~-------~~~~~~~~~~~~------~~~~vvViG~G~~----g--~e~a----~~l~~~g~~-----Vtlv~ 275 (551)
|++||.+. +.+.++...+.+ ..++++|||+|+. | +|+| ..+++.|.+ |++++
T Consensus 115 ~~ipG~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~vVVGgG~~~g~~G~~~E~a~~la~~l~~~g~~~~~~~Vtlv~ 194 (437)
T 3sx6_A 115 ENVPGSDPHEGPVQSICTVDHAERAFAEYQALLREPGPIVIGAMAGASCFGPAYEYAMIVASDLKKRGMRDKIPSFTFIT 194 (437)
T ss_dssp GGSTTCSTTTSSEECCSSHHHHHHHHHHHHHHHHSCCCEEEEECTTCCCCHHHHHHHHHHHHHHHHTTCGGGCSCEEEEE
T ss_pred ccCCCCCcccCcceecccccHHHHHHHHHHHHHhCCCEEEEEcCCCCCcCcHHHHHHHHHHHHHHHcCCcccCcEEEEEc
Confidence 99999752 344555443321 1345688888554 3 7777 666777875 99999
Q ss_pred ecCccC----CCCCHHHHHHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEE--CC-----CeEEEeeEEEEecCcCCC
Q 008860 276 RQKKVL----RGFDEDIRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKT--NK-----GTVDGFSHVMFATGRRPN 344 (551)
Q Consensus 276 ~~~~~l----~~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~--~~-----G~~i~~d~vi~a~G~~p~ 344 (551)
+.+.+. +.+ ++..+.+.+.+++.||+++++++|++++.+ + +.+.. .+ ++++++|.+++++|+.|+
T Consensus 195 ~~~~~~~~~l~~~-~~~~~~~~~~l~~~gI~~~~~~~v~~v~~~--~-v~~~~~~~~g~~~~~~~i~~D~vv~~~g~~~~ 270 (437)
T 3sx6_A 195 SEPYIGHLGIQGV-GDSKGILTKGLKEEGIEAYTNCKVTKVEDN--K-MYVTQVDEKGETIKEMVLPVKFGMMIPAFKGV 270 (437)
T ss_dssp SSSSTTCTTTTCC-TTHHHHHHHHHHHTTCEEECSEEEEEEETT--E-EEEEEECTTSCEEEEEEEECSEEEEECCEECC
T ss_pred CCccccccccCcc-hHHHHHHHHHHHHCCCEEEcCCEEEEEECC--e-EEEEecccCCccccceEEEEeEEEEcCCCcCc
Confidence 988763 222 357888999999999999999999999643 3 33432 33 567999999999999887
Q ss_pred CCCCCccccCeeecCCCCeEeCCCCCC-CCCcEEEeCcCCCC------------CCChHHHHHhHHHHHHHHc
Q 008860 345 TKNLGLEKVGVKMTKNGAIEVDEYSGT-AVPSIWAVGDVTDR------------INLTPVALMEGGALAKTLF 404 (551)
Q Consensus 345 ~~~l~l~~~gl~~~~~G~i~vd~~~~t-~~~~vya~GD~~~~------------~~~~~~A~~~g~~aa~~i~ 404 (551)
..+ .+..++ .+++|+|.||+++|| ++|||||+|||+.. ++++..|..||+++|+||.
T Consensus 271 ~~~--~~~~gl-~~~~G~i~Vd~~l~t~~~~~Ifa~GD~~~~~~~~~~~~~~~~pk~~~~A~~qg~~aA~ni~ 340 (437)
T 3sx6_A 271 PAV--AGVEGL-CNPGGFVLVDEHQRSKKYANIFAAGIAIAIPPVETTPVPTGAPKTGYMIESMVSAAVHNIK 340 (437)
T ss_dssp HHH--HTSTTT-BCTTSCBCBCTTSBBSSCTTEEECGGGBCCCCSCCCSSCCCCCCCHHHHHHHHHHHHHHHH
T ss_pred hhh--hccccc-cCCCCcEEeChhccCCCCCCEEEEEEEeccCCcCCCcCCCCCCcHHHHHHHHHHHHHHHHH
Confidence 653 233566 578899999999998 99999999999973 4688899999999999986
|
| >1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-33 Score=318.02 Aligned_cols=278 Identities=22% Similarity=0.284 Sum_probs=206.3
Q ss_pred CCccEEEECCChHHHHHHHHHHhCCC-cEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhhccCCCc
Q 008860 71 YDFDLFTIGAGSGGVRASRFAANFGA-SVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDESNGFGW 149 (551)
Q Consensus 71 ~~~dVvIIGgG~aGl~aA~~l~~~G~-~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~ 149 (551)
..+||+|||||+||++||..|++.|+ +|+|||+ ...+||++. .++| .|..
T Consensus 186 ~~~~VvVIGgGpAGl~aA~~L~~~G~~~Vtv~E~---------~~~~GG~~~--~~ip------------------~~~~ 236 (1025)
T 1gte_A 186 YSAKIALLGAGPASISCASFLARLGYSDITIFEK---------QEYVGGLST--SEIP------------------QFRL 236 (1025)
T ss_dssp GGCCEEEECCSHHHHHHHHHHHHTTCCCEEEEES---------SSSCSTHHH--HTSC------------------TTTS
T ss_pred CCCEEEEECccHHHHHHHHHHHhcCCCcEEEEeC---------CCCCCcccc--ccCC------------------cccC
Confidence 35899999999999999999999999 7999993 456788742 1122 1111
Q ss_pred ccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEeEEEEecCCEEEE-cCEEEEeCeEEEcCCC-CCCCCCC-
Q 008860 150 KYGTEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIEGRGKIVDPHTVDV-DGKLYSARHILISVGG-RPFIPDI- 226 (551)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~i~~~~v~v-~g~~~~~d~lviAtG~-~p~~p~i- 226 (551)
. ..... +..+.+++.||+++.++.. ..+.+.+ ++..+.||+||||||+ +|+.+++
T Consensus 237 --------~-~~~~~-----------~~~~~~~~~gv~~~~~~~v--~~~~v~~~~~~~~~~d~vvlAtGa~~p~~l~~~ 294 (1025)
T 1gte_A 237 --------P-YDVVN-----------FEIELMKDLGVKIICGKSL--SENEITLNTLKEEGYKAAFIGIGLPEPKTDDIF 294 (1025)
T ss_dssp --------C-HHHHH-----------HHHHHHHTTTCEEEESCCB--STTSBCHHHHHHTTCCEEEECCCCCEECCCGGG
T ss_pred --------C-HHHHH-----------HHHHHHHHCCcEEEcccEe--ccceEEhhhcCccCCCEEEEecCCCCCCCCCCC
Confidence 0 11111 1234566789999887543 2223444 3345789999999998 5876654
Q ss_pred CCC---Cceecchhhhc----------------CCCCCCeEEEEcCcHHHHHHHHHHHhCCC-eEEEEeecC-ccCCCCC
Q 008860 227 PGS---EYAIDSDAALD----------------LPSKPEKIAIVGGGYIALEFAGIFSGLTS-EVHVFIRQK-KVLRGFD 285 (551)
Q Consensus 227 ~g~---~~~~~~~~~~~----------------~~~~~~~vvViG~G~~g~e~a~~l~~~g~-~Vtlv~~~~-~~l~~~~ 285 (551)
+|. ..+++..+++. +...+++|+|||+|++|+|+|..+.++|. +|+++++.+ .+++.++
T Consensus 295 ~G~~~~~gv~~a~~~L~~~~~~~~~~~~~~~~~~~~~~~~VvVIGgG~~g~e~A~~~~~~G~~~Vtvv~r~~~~~~~~~~ 374 (1025)
T 1gte_A 295 QGLTQDQGFYTSKDFLPLVAKSSKAGMCACHSPLPSIRGAVIVLGAGDTAFDCATSALRCGARRVFLVFRKGFVNIRAVP 374 (1025)
T ss_dssp TTCCTTTTEEEHHHHHHHHHHHHCBTTBSCCCCCCCCCSEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSCGGGCCSCH
T ss_pred CCCCCCCCEEEhHHHHHHHHhhcccccccccccccccCCcEEEECCChHHHHHHHHHHHcCCCEEEEEEecChhhCCCCH
Confidence 454 34666555442 13346799999999999999999999996 899999987 4556565
Q ss_pred HHHHHHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEEC------CC---------eEEEeeEEEEecCcCCCCCCCCc
Q 008860 286 EDIRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTN------KG---------TVDGFSHVMFATGRRPNTKNLGL 350 (551)
Q Consensus 286 ~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~------~G---------~~i~~d~vi~a~G~~p~~~~l~l 350 (551)
+++ +.+++.||++++++.++++..+++.+..|++. +| .++++|.||+|+|+.|+...+ +
T Consensus 375 ~e~-----~~~~~~Gv~~~~~~~~~~i~~~~g~v~~v~~~~~~~~~~g~~~~~~g~~~~i~aD~Vi~A~G~~~~~~~l-~ 448 (1025)
T 1gte_A 375 EEV-----ELAKEEKCEFLPFLSPRKVIVKGGRIVAVQFVRTEQDETGKWNEDEDQIVHLKADVVISAFGSVLRDPKV-K 448 (1025)
T ss_dssp HHH-----HHHHHTTCEEECSEEEEEEEEETTEEEEEEEEEEEECTTSCEEEEEEEEEEEECSEEEECSCEECCCHHH-H
T ss_pred HHH-----HHHHHcCCEEEeCCCceEEEccCCeEEEEEEEEeEEcCCCCcccCCCceEEEECCEEEECCCCCCCchhh-h
Confidence 554 45778899999999999998754443334432 22 368999999999998754322 3
Q ss_pred cc-cCeeecCCCCeEeCC-CCCCCCCcEEEeCcCCCCCCChHHHHHhHHHHHHHHcC
Q 008860 351 EK-VGVKMTKNGAIEVDE-YSGTAVPSIWAVGDVTDRINLTPVALMEGGALAKTLFQ 405 (551)
Q Consensus 351 ~~-~gl~~~~~G~i~vd~-~~~t~~~~vya~GD~~~~~~~~~~A~~~g~~aa~~i~g 405 (551)
.. .|++++++|+|.||+ ++||+.|+|||+|||+..+.++..|+.||+.||.+|.+
T Consensus 449 ~~~~gl~~~~~G~I~vd~~~~~Ts~~~VfA~GD~~~~~~~~~~A~~~G~~aA~~i~~ 505 (1025)
T 1gte_A 449 EALSPIKFNRWDLPEVDPETMQTSEPWVFAGGDIVGMANTTVESVNDGKQASWYIHK 505 (1025)
T ss_dssp HHTTTSCBCTTSSBCCCTTTCBCSSTTEEECSGGGCSCCCHHHHHHHHHHHHHHHHH
T ss_pred hcccCceECCCCCEEECCCCCccCCCCEEEeCCCCCCchHHHHHHHHHHHHHHHHHH
Confidence 33 589999899999997 89999999999999999888999999999999999974
|
| >2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=4.8e-31 Score=277.77 Aligned_cols=293 Identities=15% Similarity=0.128 Sum_probs=200.7
Q ss_pred ccEEEECCChHHHHHHHHHHh---CCCc---EEEEccCCCCCCCCCCCCCCCeecc---CCCcchHHHHHhhhh------
Q 008860 73 FDLFTIGAGSGGVRASRFAAN---FGAS---VAICELPFSTISSETTGGVGGTCVL---RGCVPKKLLVYASKF------ 137 (551)
Q Consensus 73 ~dVvIIGgG~aGl~aA~~l~~---~G~~---V~liE~~~~~~~~~~~~~~GG~~~~---~g~~p~~~l~~~~~~------ 137 (551)
+||+|||||++|+++|..|++ .|++ |+|||+ ...+||+|.+ .||.|........-+
T Consensus 3 ~~V~IIGaG~aGl~aA~~L~~~~~~G~~~~~V~v~E~---------~~~~GG~w~~~~~~g~~~~g~~~~~~~y~~l~~~ 73 (464)
T 2xve_A 3 TRIAILGAGPSGMAQLRAFQSAQEKGAEIPELVCFEK---------QADWGGQWNYTWRTGLDENGEPVHSSMYRYLWSN 73 (464)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHHHTTCCCCEEEEECS---------SSSSCGGGSCCSCCSBCTTSSBCCCCCCTTCBCS
T ss_pred CcEEEECccHHHHHHHHHHHhhhhcCCCCCcEEEEEc---------CCCCCCEeecCCCCCccccCCCCcCccccchhhc
Confidence 699999999999999999999 9999 999993 4578999976 345432110000000
Q ss_pred -hhHhhhccCCCcccC----CCCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCeE--EEEe-EEEEec--CC----EEEE
Q 008860 138 -SHEFDESNGFGWKYG----TEPQHDWSTLIANKNAELQRLTGIYKNILINAGIT--LIEG-RGKIVD--PH----TVDV 203 (551)
Q Consensus 138 -~~~~~~~~~~g~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~~~-~~~~i~--~~----~v~v 203 (551)
......+..|.+... .........+..+ +...+++.+++ +..+ ++..++ .. .+.+
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----------l~~~~~~~gv~~~i~~~~~V~~v~~~~~~~~~~V~~ 142 (464)
T 2xve_A 74 GPKECLEFADYTFDEHFGKPIASYPPREVLWDY-----------IKGRVEKAGVRKYIRFNTAVRHVEFNEDSQTFTVTV 142 (464)
T ss_dssp SCGGGTCBTTBCHHHHHSSCCCSSCBHHHHHHH-----------HHHHHHHHTCGGGEECSEEEEEEEEETTTTEEEEEE
T ss_pred CChhhcccCCCCCCcccCCCCCCCCCHHHHHHH-----------HHHHHHHcCCcceEEeCCEEEEEEEcCCCCcEEEEE
Confidence 000001111111100 0111222222222 22333334554 3322 344332 22 5555
Q ss_pred -c---C--EEEEeCeEEEcCC--CCCCCCCCCCCCc----eecchhhhcCC-CCCCeEEEEcCcHHHHHHHHHHHhCCCe
Q 008860 204 -D---G--KLYSARHILISVG--GRPFIPDIPGSEY----AIDSDAALDLP-SKPEKIAIVGGGYIALEFAGIFSGLTSE 270 (551)
Q Consensus 204 -~---g--~~~~~d~lviAtG--~~p~~p~i~g~~~----~~~~~~~~~~~-~~~~~vvViG~G~~g~e~a~~l~~~g~~ 270 (551)
+ + .++.||+||+||| +.|+.|++||.+. ++++.++.... ..+++|+|||+|++|+|+|..|.+.|.+
T Consensus 143 ~~~~~g~~~~~~~d~VVvAtG~~s~p~~p~ipG~~~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sg~eiA~~l~~~g~~ 222 (464)
T 2xve_A 143 QDHTTDTIYSEEFDYVVCCTGHFSTPYVPEFEGFEKFGGRILHAHDFRDALEFKDKTVLLVGSSYSAEDIGSQCYKYGAK 222 (464)
T ss_dssp EETTTTEEEEEEESEEEECCCSSSSBCCCCCBTTTTCCSEEEEGGGCCCGGGGTTSEEEEECCSTTHHHHHHHHHHTTCS
T ss_pred EEcCCCceEEEEcCEEEECCCCCCCCccCCCCCcccCCceEEehhhhCCHhHcCCCEEEEEcCCCCHHHHHHHHHHhCCe
Confidence 3 3 6789999999999 8999999999753 44555444332 2579999999999999999999999999
Q ss_pred EEEEeecCccCCCCCHHHHHHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCcCCCCCCCCc
Q 008860 271 VHVFIRQKKVLRGFDEDIRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNTKNLGL 350 (551)
Q Consensus 271 Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~~~~l~l 350 (551)
|+++++.+.+++..- ..||+++ ..|++++ ++ .|.+.||+++++|.||+|||++|+.+++.
T Consensus 223 V~li~~~~~~~~~~~------------~~~V~~~--~~V~~i~--~~---~V~~~dG~~i~~D~Vi~atG~~p~~~~l~- 282 (464)
T 2xve_A 223 KLISCYRTAPMGYKW------------PENWDER--PNLVRVD--TE---NAYFADGSSEKVDAIILCTGYIHHFPFLN- 282 (464)
T ss_dssp EEEEECSSCCCCCCC------------CTTEEEC--SCEEEEC--SS---EEEETTSCEEECSEEEECCCBCCCCTTBC-
T ss_pred EEEEEECCCCCCCCC------------CCceEEc--CCeEEEe--CC---EEEECCCCEEeCCEEEECCCCCCCCCCcC-
Confidence 999999887765311 2478887 5788884 22 37788999999999999999999998853
Q ss_pred cccCeeecCCCCeEeCCC---CCCCCCcEEEeCcCCCCCCChHHHHHhHHHHHHHHcCCC
Q 008860 351 EKVGVKMTKNGAIEVDEY---SGTAVPSIWAVGDVTDRINLTPVALMEGGALAKTLFQAE 407 (551)
Q Consensus 351 ~~~gl~~~~~G~i~vd~~---~~t~~~~vya~GD~~~~~~~~~~A~~~g~~aa~~i~g~~ 407 (551)
+..++.++++|.+ ++.+ ++|+.|+|||+||++.. ..++.|..||++++.++.|..
T Consensus 283 ~~~gl~~~~~~~v-~~~~~~~~~t~~p~i~aiGd~~~~-~~~~~a~~qa~~~a~~l~G~~ 340 (464)
T 2xve_A 283 DDLRLVTNNRLWP-LNLYKGVVWEDNPKFFYIGMQDQW-YSFNMFDAQAWYARDVIMGRL 340 (464)
T ss_dssp TTTCCCCCSSSCC-SSEETTTEESSSTTEEECSCSCCS-SCHHHHHHHHHHHHHHHTTSS
T ss_pred cccccccCCCccc-ccccceEecCCCCCEEEEeCcccc-cchHHHHHHHHHHHHHHcCCC
Confidence 3467887766555 4533 56899999999999874 568899999999999999853
|
| >3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=1.6e-31 Score=277.66 Aligned_cols=276 Identities=19% Similarity=0.179 Sum_probs=205.4
Q ss_pred ccEEEECCChHHHHHHHHHHh---CCCcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhhccCCCc
Q 008860 73 FDLFTIGAGSGGVRASRFAAN---FGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDESNGFGW 149 (551)
Q Consensus 73 ~dVvIIGgG~aGl~aA~~l~~---~G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~ 149 (551)
.||+|||||++|+++|..|++ .|.+|+|||+ ....+.. .+.+ +
T Consensus 2 ~~VvIIGgG~aGl~aA~~L~~~~~~g~~V~vie~---------~~~~~~~----~~~~---------------------~ 47 (409)
T 3h8l_A 2 TKVLVLGGRFGALTAAYTLKRLVGSKADVKVINK---------SRFSYFR----PALP---------------------H 47 (409)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHHGGGSEEEEEES---------SSEEEEC----CSSC---------------------C
T ss_pred CeEEEECCCHHHHHHHHHHHhhCCCCCeEEEEeC---------CCCceec----cchh---------------------h
Confidence 589999999999999999999 8999999993 1111110 0111 0
Q ss_pred ccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEeEEEEecCC--EEEE-cC----EEEEeCeEEEcCCCCCC
Q 008860 150 KYGTEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIEGRGKIVDPH--TVDV-DG----KLYSARHILISVGGRPF 222 (551)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~i~~~--~v~v-~g----~~~~~d~lviAtG~~p~ 222 (551)
...+ ..+..++ ...+.+.+.+.+++++.+++..++.. .+.+ ++ .++.||+||+|||++|.
T Consensus 48 ~~~~--~~~~~~~-----------~~~~~~~~~~~gv~~~~~~v~~i~~~~~~V~~~~g~~~~~~~~~d~lViAtG~~~~ 114 (409)
T 3h8l_A 48 VAIG--VRDVDEL-----------KVDLSEALPEKGIQFQEGTVEKIDAKSSMVYYTKPDGSMAEEEYDYVIVGIGAHLA 114 (409)
T ss_dssp CCSS--CCCCCCE-----------EEEHHHHTGGGTCEEEECEEEEEETTTTEEEEECTTSCEEEEECSEEEECCCCEEC
T ss_pred cccC--CcCHHHH-----------HHHHHHHHhhCCeEEEEeeEEEEeCCCCEEEEccCCcccceeeCCEEEECCCCCcC
Confidence 0000 0000000 01112334556999999988887654 6666 33 34899999999999999
Q ss_pred CCCCCCCC----ceecchhhhcCC----CCCCeEEEEcCcH-------------------------HHHHHH----HHHH
Q 008860 223 IPDIPGSE----YAIDSDAALDLP----SKPEKIAIVGGGY-------------------------IALEFA----GIFS 265 (551)
Q Consensus 223 ~p~i~g~~----~~~~~~~~~~~~----~~~~~vvViG~G~-------------------------~g~e~a----~~l~ 265 (551)
.|++||.+ .+.+.++...+. ...++++|||+|. +++|+| ..++
T Consensus 115 ~~~ipG~~~~~~~~~~~~~~~~~~~~l~~~~~~~vViG~G~f~~~~~~~~~~p~~~~p~~~~~~~~~~~e~a~~~~~~l~ 194 (409)
T 3h8l_A 115 TELVKGWDKYGYSVCEPEFATKLREKLESFQGGNIAIGSGPFYQGHNPKPKVPENFVPNADSACEGPVFEMSLMLHGYFK 194 (409)
T ss_dssp GGGSBTHHHHCEESSSTTHHHHHHHHHHHCCSEEEEEEECCBCCCCSSCCBSCTTSSCCCSCSSCHHHHHHHHHHHHHHH
T ss_pred ccCCCChhhcCcCcCCHHHHHHHHHHHHHhcCCeEEEEecccccCCCccccccccccCCCCcccCCHHHHHHHHHHHHHH
Confidence 99899864 233444443322 1235677999991 466766 5566
Q ss_pred hCCC----eEEEEeecCccCCCCCHHHHHHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCc
Q 008860 266 GLTS----EVHVFIRQKKVLRGFDEDIRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGR 341 (551)
Q Consensus 266 ~~g~----~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~ 341 (551)
+.|. +|+++++.+ +++.+++++.+.+.+.+++.||+++++++|++++.+ + |.+.+|+++++|.||+++|+
T Consensus 195 ~~g~~~~~~v~~~~~~~-~l~~~~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~--~---v~~~~g~~~~~D~vi~a~G~ 268 (409)
T 3h8l_A 195 KKGMLDKVHVTVFSPGE-YLSDLSPNSRKAVASIYNQLGIKLVHNFKIKEIREH--E---IVDEKGNTIPADITILLPPY 268 (409)
T ss_dssp TTTCTTTEEEEEECSSS-SSTTBCHHHHHHHHHHHHHHTCEEECSCCEEEECSS--E---EEETTSCEEECSEEEEECCE
T ss_pred HcCCCCCeEEEEEeCCc-cccccCHHHHHHHHHHHHHCCCEEEcCCceEEECCC--e---EEECCCCEEeeeEEEECCCC
Confidence 7784 899999988 777889999999999999999999999999999642 2 78889999999999999999
Q ss_pred CCCCCCCCcccc--CeeecCCCCeEeCCCCCC-CCCcEEEeCcCCC--CCCChHHHHHhHHHHHHHHcC
Q 008860 342 RPNTKNLGLEKV--GVKMTKNGAIEVDEYSGT-AVPSIWAVGDVTD--RINLTPVALMEGGALAKTLFQ 405 (551)
Q Consensus 342 ~p~~~~l~l~~~--gl~~~~~G~i~vd~~~~t-~~~~vya~GD~~~--~~~~~~~A~~~g~~aa~~i~g 405 (551)
.|+.. +... ++ .+++|+|.||+++|| +.|||||+|||+. .++++..|..||+++|+||.+
T Consensus 269 ~~~~~---l~~~~~~l-~~~~G~i~vd~~~~~~~~~~vfa~GD~~~~~~~~~~~~A~~q~~~aa~~i~~ 333 (409)
T 3h8l_A 269 TGNPA---LKNSTPDL-VDDGGFIPTDLNMVSIKYDNVYAVGDANSMTVPKLGYLAVMTGRIAAQHLAN 333 (409)
T ss_dssp ECCHH---HHTSCGGG-SCTTSCBCBBTTSBBSSCTTEEECGGGBTTCCSCCHHHHHHHHHHHHHHHHH
T ss_pred CccHH---HHhccccC-cCCCCCEEeCcccccCCCCCEEEeehhccCCCCcHHHHHHHHHHHHHHHHHH
Confidence 99853 4555 44 367889999999998 9999999999997 368899999999999999864
|
| >3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.1e-31 Score=278.07 Aligned_cols=304 Identities=17% Similarity=0.225 Sum_probs=210.1
Q ss_pred ccEEEECCChHHHHHHHHHHhCC--CcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhhccCCCcc
Q 008860 73 FDLFTIGAGSGGVRASRFAANFG--ASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDESNGFGWK 150 (551)
Q Consensus 73 ~dVvIIGgG~aGl~aA~~l~~~G--~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~ 150 (551)
++|||||||+||+++|.+|++.+ .+|+|||+ ......| +.+.... ...
T Consensus 3 KkVvIIG~G~AG~~aA~~L~~~~~~~~Vtlie~----------~~~~~~~----p~~~~v~--~g~-------------- 52 (401)
T 3vrd_B 3 RKVVVVGGGTGGATAAKYIKLADPSIEVTLIEP----------NETYYTC----YMSNEVI--GGD-------------- 52 (401)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECS----------CSSEECS----TTHHHHH--HTS--------------
T ss_pred CEEEEECCcHHHHHHHHHHHhcCcCCeEEEEeC----------CCCCCCc----cCHHHHh--cCC--------------
Confidence 57999999999999999998854 69999992 2211111 1111110 000
Q ss_pred cCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEeEEEEecC--CEEEE-cCEEEEeCeEEEcCCCCCCCCCCC
Q 008860 151 YGTEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIEGRGKIVDP--HTVDV-DGKLYSARHILISVGGRPFIPDIP 227 (551)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~i~~--~~v~v-~g~~~~~d~lviAtG~~p~~p~i~ 227 (551)
.+...+... + +.+.+.+++++.+++..+|+ +.+.+ ++.++.||+||+|||+++.++++|
T Consensus 53 ------~~~~~~~~~-----------~-~~~~~~gv~~i~~~v~~id~~~~~v~~~~g~~i~yd~LviAtG~~~~~~~i~ 114 (401)
T 3vrd_B 53 ------RELASLRVG-----------Y-DGLRAHGIQVVHDSALGIDPDKKLVKTAGGAEFAYDRCVVAPGIDLLYDKIE 114 (401)
T ss_dssp ------SCGGGGEEC-----------S-HHHHHTTCEEECSCEEEEETTTTEEEETTSCEEECSEEEECCCEEECGGGSB
T ss_pred ------CCHHHHhhC-----------H-HHHHHCCCEEEEeEEEEEEccCcEEEecccceeecceeeeccCCccccCCcc
Confidence 000000000 0 11334599999999998875 45666 778999999999999999999999
Q ss_pred CCCc---------eecchhhhcCC------CCCCeEEEEcCc----------HHHHHHHHHHHhCC--CeEEEEeecCcc
Q 008860 228 GSEY---------AIDSDAALDLP------SKPEKIAIVGGG----------YIALEFAGIFSGLT--SEVHVFIRQKKV 280 (551)
Q Consensus 228 g~~~---------~~~~~~~~~~~------~~~~~vvViG~G----------~~g~e~a~~l~~~g--~~Vtlv~~~~~~ 280 (551)
|.+. ..+.++...+. .....+++.+++ ..+++++..+++.+ .+|+++++.+.+
T Consensus 115 G~~e~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~i~~~~a~~e~~~~~a~~~~~~~~~~~v~i~~~~~~~ 194 (401)
T 3vrd_B 115 GYSEALAAKLPHAWKAGEQTALLRRQLESMDDGGVVIIAPPAPPFRCPPGPYERASQIAHYLKAHKSKSKVIILDNSQTF 194 (401)
T ss_dssp TCCSGGGGTSCCCSSCSHHHHHHHHHHHHSCTTCEEEEECCSSSCBCTTHHHHHHHHHHHHHHHHCTTCEEEEECSSSSC
T ss_pred CchhhcccCccceeccHHHHHHHHHHHHhcccCCcEEEecCCccEEeehHHHHHHHHHHHHHHhcCCCCEEEEEcccccc
Confidence 8642 11222222111 122334433221 14567777777654 689999988876
Q ss_pred CC--CCCHHHHHHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCcCCCCCCCCccccCeeec
Q 008860 281 LR--GFDEDIRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNTKNLGLEKVGVKMT 358 (551)
Q Consensus 281 l~--~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~~~~l~l~~~gl~~~ 358 (551)
.. .+++.+.+.+.+.+++.||++++++++..++.+.+. ..+.+.+|+++++|.+++++|.+|+. + ++++++ .+
T Consensus 195 ~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~v~~v~~~~~~-~~v~~~~g~~i~~D~vi~~~g~~~~~-~--~~~~gl-~~ 269 (401)
T 3vrd_B 195 SKQAQFTKGWERLYGFGTENALIEWHPGPDAAVVKTDTEA-MTVETSFGETFKAAVINLIPPQRAGK-I--AQSASL-TN 269 (401)
T ss_dssp TTHHHHHHHHHHHSCTTSTTCSEEEECTTTTCEEEEETTT-TEEEETTSCEEECSEEEECCCEEECH-H--HHHTTC-CC
T ss_pred cccccccHHHHHHHHHHHHhcCcEEEeCceEEEEEecccc-eEEEcCCCcEEEeeEEEEecCcCCch-h--Hhhccc-cc
Confidence 43 356677777777788999999999999999887665 67899999999999999999999974 3 677888 47
Q ss_pred CCCCeEeCCC-CC-CCCCcEEEeCcCCCC---CCChHHHHHhHHHHHHHHc----CCCCCCCCCCCccEEEecCCceEEe
Q 008860 359 KNGAIEVDEY-SG-TAVPSIWAVGDVTDR---INLTPVALMEGGALAKTLF----QAEPTKPDYSAVPSAVFSQPPIGQV 429 (551)
Q Consensus 359 ~~G~i~vd~~-~~-t~~~~vya~GD~~~~---~~~~~~A~~~g~~aa~~i~----g~~~~~~~~~~~~~~~~~~~~~~~v 429 (551)
++|+|.||++ +| |++|||||+|||++. +++++.|.+||+++|+||+ |+++....|....++.. .+..+.+
T Consensus 270 ~~G~i~VD~~tl~~t~~p~VfAiGDva~~~~~pk~a~~A~~qa~v~A~ni~~~l~G~~~~~~~y~~~~~~~~-~~~~~~~ 348 (401)
T 3vrd_B 270 DSGWCPVDIRTFESSLQPGIHVIGDACNAAPMPKSAYSANSQAKVAAAAVVALLKGEEPGTPSYLNTCYSIL-APGYGIS 348 (401)
T ss_dssp TTSSBCBCTTTCBBSSSTTEEECGGGBCCTTSCBSHHHHHHHHHHHHHHHHHHHHTCCCCCCCEEEEEEEEE-ETTEEEE
T ss_pred cCCCEEECCCcceecCCCCEEEecccccCCCCCchHHHHHHHHHHHHHHHHHHhcCCCCCCcccCCeEEEEE-ecCCceE
Confidence 8899999987 65 799999999999864 5789999999999999986 55444444544443322 2344444
Q ss_pred e
Q 008860 430 G 430 (551)
Q Consensus 430 G 430 (551)
.
T Consensus 349 ~ 349 (401)
T 3vrd_B 349 I 349 (401)
T ss_dssp E
T ss_pred E
Confidence 4
|
| >1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=6.6e-32 Score=282.98 Aligned_cols=276 Identities=15% Similarity=0.185 Sum_probs=201.4
Q ss_pred CccEEEECCChHHHHHHHHHHh-C------CCcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhhc
Q 008860 72 DFDLFTIGAGSGGVRASRFAAN-F------GASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDES 144 (551)
Q Consensus 72 ~~dVvIIGgG~aGl~aA~~l~~-~------G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~ 144 (551)
.+||+|||||+||+++|..|++ . |.+|+|||+ ...+||.| ++||.|.+.
T Consensus 3 ~~~VvIIG~G~aGl~aA~~L~~~~~~~~~~g~~V~lie~---------~~~~gg~~-~~gv~p~~~-------------- 58 (456)
T 1lqt_A 3 PYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEM---------LPTPWGLV-RSGVAPDHP-------------- 58 (456)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEES---------SSSCSTHH-HHTSCTTCT--------------
T ss_pred CCEEEEECcCHHHHHHHHHHHhhCccccCCCCeEEEEec---------CCCCCCcc-ccccCCCCC--------------
Confidence 4799999999999999999999 7 999999993 33577877 456655211
Q ss_pred cCCCcccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEeEEEEecCCEEEEcCEEEEeCeEEEcCCCC-CCC
Q 008860 145 NGFGWKYGTEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIEGRGKIVDPHTVDVDGKLYSARHILISVGGR-PFI 223 (551)
Q Consensus 145 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~i~~~~v~v~g~~~~~d~lviAtG~~-p~~ 223 (551)
....+ ...+...+.+.+++++.+. . ++ +.+.++...+.||+||+|||+. |+.
T Consensus 59 -------------~~~~~-----------~~~~~~~~~~~~v~~~~~v-~-v~-~~v~~~~~~~~~d~lViAtG~~~~~~ 111 (456)
T 1lqt_A 59 -------------KIKSI-----------SKQFEKTAEDPRFRFFGNV-V-VG-EHVQPGELSERYDAVIYAVGAQSDRM 111 (456)
T ss_dssp -------------GGGGG-----------HHHHHHHHTSTTEEEEESC-C-BT-TTBCHHHHHHHSSEEEECCCCCEECC
T ss_pred -------------CHHHH-----------HHHHHHHHhcCCCEEEeeE-E-EC-CEEEECCCeEeCCEEEEeeCCCCCCC
Confidence 00111 1122334556789988763 2 32 2344422257899999999997 688
Q ss_pred CCCCCCC--ceecchhhh-----------cCCC-CCCeEEEEcCcHHHHHHHHHHHhC--------------------C-
Q 008860 224 PDIPGSE--YAIDSDAAL-----------DLPS-KPEKIAIVGGGYIALEFAGIFSGL--------------------T- 268 (551)
Q Consensus 224 p~i~g~~--~~~~~~~~~-----------~~~~-~~~~vvViG~G~~g~e~a~~l~~~--------------------g- 268 (551)
|++||.+ .+++..++. .+.. .+++++|||+|++|+|+|..|.+. |
T Consensus 112 ~~ipG~~~~gv~~~~~~~~~~~~~~d~~~~~~~~~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~tdi~~~~~~~l~~~g~ 191 (456)
T 1lqt_A 112 LNIPGEDLPGSIAAVDFVGWYNAHPHFEQVSPDLSGARAVVIGNGNVALDVARILLTDPDVLARTDIADHALESLRPRGI 191 (456)
T ss_dssp CCCTTTTSTTEEEHHHHHHHHTTCGGGTTCCCCCCSSEEEEECCSHHHHHHHHHHHSCHHHHTTSCCCHHHHHHHTTCCC
T ss_pred CCCCCCCCCCcEEHHHHHhhhhcCcccccchhhcCCCEEEEECCCHHHHHHHHHHHhhhhhhcCCCccHHHHHHHHHCCC
Confidence 8899864 355555442 2222 478999999999999999999874 5
Q ss_pred CeEEEEeecCccCCCCCH-------------------HH------------------HHHHHHHHHh------cCcEEEc
Q 008860 269 SEVHVFIRQKKVLRGFDE-------------------DI------------------RDFVAEQMSL------RGIEFHT 305 (551)
Q Consensus 269 ~~Vtlv~~~~~~l~~~~~-------------------~~------------------~~~l~~~l~~------~Gv~i~~ 305 (551)
.+|+++.|.+.+...+.+ ++ .+.+.+.+++ +||++++
T Consensus 192 ~~V~lv~r~~~~~~~f~~~elrel~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~gv~i~~ 271 (456)
T 1lqt_A 192 QEVVIVGRRGPLQAAFTTLELRELADLDGVDVVIDPAELDGITDEDAAAVGKVCKQNIKVLRGYADREPRPGHRRMVFRF 271 (456)
T ss_dssp CEEEEECSSCGGGCCCCHHHHHHGGGCTTEEEECCGGGGTTCCHHHHHHHCHHHHHHHHHHHHHHTCC-CTTSEEEEEEC
T ss_pred cEEEEEecCChhhhccChHHHHHhhcCCCceeeeChHHhccchhhhhhhccHHHHHHHHHHHHHhhcCCCCCCceEEEEe
Confidence 499999998876544331 11 2344555555 7999999
Q ss_pred CcccEEEEEcCCceEEEEEC----------------CC--eEEEeeEEEEecCcCCCCCCCCccccCeeecCCCCeEeCC
Q 008860 306 EESPQAILKSTDGSLSVKTN----------------KG--TVDGFSHVMFATGRRPNTKNLGLEKVGVKMTKNGAIEVDE 367 (551)
Q Consensus 306 ~~~v~~i~~~~~~~~~V~~~----------------~G--~~i~~d~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~ 367 (551)
++.+.+|..++ ....|++. +| ++++||.||+|+|++|++ + .+++++++|+|.+|+
T Consensus 272 ~~~~~~i~~~~-~v~~v~~~~~~~~~~~~~~~~~~~~g~~~~i~~d~vi~a~G~~p~~-l-----~gl~~d~~g~i~vn~ 344 (456)
T 1lqt_A 272 LTSPIEIKGKR-KVERIVLGRNELVSDGSGRVAAKDTGEREELPAQLVVRSVGYRGVP-T-----PGLPFDDQSGTIPNV 344 (456)
T ss_dssp SEEEEEEECSS-SCCEEEEEEEEEEECSSSSEEEEEEEEEEEEECSEEEECSCEECCC-C-----TTSCCBTTTTBCCEE
T ss_pred CCCCeEEecCC-cEeEEEEEEEEecCCCcccccccCCCceEEEEcCEEEEccccccCC-C-----CCCcccCCCCeeECC
Confidence 99999998653 21223332 34 469999999999999988 2 367788889999999
Q ss_pred CCC-CCCCcEEEeCcCCCCCC-ChHHHHHhHHHHHHHHcC
Q 008860 368 YSG-TAVPSIWAVGDVTDRIN-LTPVALMEGGALAKTLFQ 405 (551)
Q Consensus 368 ~~~-t~~~~vya~GD~~~~~~-~~~~A~~~g~~aa~~i~g 405 (551)
++| |+.|+|||+|||+..+. ....|+.||+.+|.+|++
T Consensus 345 ~~rvt~~pgvya~GD~~~gp~~~i~~a~~~g~~~a~~i~~ 384 (456)
T 1lqt_A 345 GGRINGSPNEYVVGWIKRGPTGVIGTNKKDAQDTVDTLIK 384 (456)
T ss_dssp TTEETTCSSEEECTHHHHCSCSCTTHHHHHHHHHHHHHHH
T ss_pred CCcCCCCCCEEEEeccCCCCchhHHHHHHHHHHHHHHHHH
Confidence 999 89999999999997654 566899999999999874
|
| >1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.9e-31 Score=279.81 Aligned_cols=277 Identities=17% Similarity=0.208 Sum_probs=199.6
Q ss_pred CccEEEECCChHHHHHHHHHHhCC--CcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhhccCCCc
Q 008860 72 DFDLFTIGAGSGGVRASRFAANFG--ASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDESNGFGW 149 (551)
Q Consensus 72 ~~dVvIIGgG~aGl~aA~~l~~~G--~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~ 149 (551)
.+||+|||||++|+++|..|++.| .+|+|||+ ...+||.+ +.+|.|.+.
T Consensus 6 ~~~vvIIG~G~aGl~aA~~l~~~g~~~~V~vie~---------~~~~gg~~-~~g~~p~~~------------------- 56 (460)
T 1cjc_A 6 TPQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEK---------QLVPFGLV-RFGVAPDHP------------------- 56 (460)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHCSSCEEEEECS---------SSSSCTHH-HHTSCTTCG-------------------
T ss_pred CceEEEECcCHHHHHHHHHHHhcCCCCCEEEEeC---------CCcCCcee-ecccCCCCc-------------------
Confidence 479999999999999999999988 99999993 33456654 445555210
Q ss_pred ccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEeEEEEecCCEEEEcCEEEEeCeEEEcCCCCC-CCCCCCC
Q 008860 150 KYGTEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIEGRGKIVDPHTVDVDGKLYSARHILISVGGRP-FIPDIPG 228 (551)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~i~~~~v~v~g~~~~~d~lviAtG~~p-~~p~i~g 228 (551)
....+ ...+.+.+++.+++++.+.. ++ ..+.++...+.||+||+|||+.+ +.|++||
T Consensus 57 --------~~~~~-----------~~~~~~~~~~~gv~~~~~~~--v~-~~V~~~~~~~~~d~lVlAtGs~~~~~~~ipG 114 (460)
T 1cjc_A 57 --------EVKNV-----------INTFTQTARSDRCAFYGNVE--VG-RDVTVQELQDAYHAVVLSYGAEDHQALDIPG 114 (460)
T ss_dssp --------GGGGH-----------HHHHHHHHTSTTEEEEBSCC--BT-TTBCHHHHHHHSSEEEECCCCCEECCCCCTT
T ss_pred --------cHHHH-----------HHHHHHHHHhCCcEEEeeeE--Ee-eEEEeccceEEcCEEEEecCcCCCCCCCCCC
Confidence 00111 12233455667898877532 11 22333333468999999999995 7788999
Q ss_pred CC--ceecchhhhc----------CC-C-CCCeEEEEcCcHHHHHHHHHHH--------------------hCCC-eEEE
Q 008860 229 SE--YAIDSDAALD----------LP-S-KPEKIAIVGGGYIALEFAGIFS--------------------GLTS-EVHV 273 (551)
Q Consensus 229 ~~--~~~~~~~~~~----------~~-~-~~~~vvViG~G~~g~e~a~~l~--------------------~~g~-~Vtl 273 (551)
.+ .+++..+++. +. . .+++++|||+|++|+|+|..|. +.+. +|++
T Consensus 115 ~~~~gv~~~~~~~~~~~~~~d~~~~~~~~~~~~vvVIGgG~~g~e~A~~L~~~~~~l~~tdi~~~a~~~l~~~g~~~V~l 194 (460)
T 1cjc_A 115 EELPGVFSARAFVGWYNGLPENRELAPDLSCDTAVILGQGNVALDVARILLTPPDHLEKTDITEAALGALRQSRVKTVWI 194 (460)
T ss_dssp TTSTTEEEHHHHHHHHTTCGGGTTCCCCTTSSEEEEESCSHHHHHHHHHHHSCGGGGTTSCCCHHHHHHHHTCCCCEEEE
T ss_pred CCCCcEEEHHHHHHHhhcCccccccccCCCCCEEEEECCCHHHHHHHHHHhhchhhhccccccHHHHHHHhhCCCcEEEE
Confidence 64 4666555421 11 2 3789999999999999999998 5677 7999
Q ss_pred EeecCcc--------------CCCC-------------------CHH---HHHHHHHHHHh--------------cCcEE
Q 008860 274 FIRQKKV--------------LRGF-------------------DED---IRDFVAEQMSL--------------RGIEF 303 (551)
Q Consensus 274 v~~~~~~--------------l~~~-------------------~~~---~~~~l~~~l~~--------------~Gv~i 303 (551)
+.|.+.+ ++.. +.. +.+.+.+.+++ +||++
T Consensus 195 v~r~~~~~~~ft~~el~~l~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~gv~~ 274 (460)
T 1cjc_A 195 VGRRGPLQVAFTIKELREMIQLPGTRPMLDPADFLGLQDRIKEAARPRKRLMELLLRTATEKPGVEEAARRASASRAWGL 274 (460)
T ss_dssp ECSSCGGGCCCCHHHHHHHHTCTTEEEECCGGGGTTHHHHTTTSCHHHHHHHHHHHHHHHSCCCHHHHHHHHTCSEEEEE
T ss_pred EEcCChHhhccCHHHHHHhhcCCCceeEechhhhcchhhhhhhccHHHHHHHHHHHHHHHhccccccccCCCCCCceEEE
Confidence 9998865 2210 010 23344455555 89999
Q ss_pred EcCcccEEEEEcC-C-ceEEEEEC---------------CC--eEEEeeEEEEecCcCCCCCCCCccccCe-eecCCCCe
Q 008860 304 HTEESPQAILKST-D-GSLSVKTN---------------KG--TVDGFSHVMFATGRRPNTKNLGLEKVGV-KMTKNGAI 363 (551)
Q Consensus 304 ~~~~~v~~i~~~~-~-~~~~V~~~---------------~G--~~i~~d~vi~a~G~~p~~~~l~l~~~gl-~~~~~G~i 363 (551)
++++.+.+|..++ + .+..|++. +| ++++||.||+|+|++|++ + .|+ +++++|+|
T Consensus 275 ~~~~~~~~i~~~~~~~~v~~v~~~~~~l~~~~~~~~~~~~g~~~~i~~d~Vi~a~G~~p~~-l-----~gl~~~d~~g~i 348 (460)
T 1cjc_A 275 RFFRSPQQVLPSPDGRRAAGIRLAVTRLEGIGEATRAVPTGDVEDLPCGLVLSSIGYKSRP-I-----DPSVPFDPKLGV 348 (460)
T ss_dssp ECSEEEEEEEECTTSSSEEEEEEEEEEEESSGGGCEEEEEEEEEEEECSEEEECCCEECCC-C-----CTTSCCBTTTTB
T ss_pred ECCCChheEEcCCCCceEEEEEEEEEEEccccCCCcccCCCceEEEEcCEEEECCCCCCCC-C-----CCCcccccCCCe
Confidence 9999999998763 3 32234332 34 479999999999999997 2 467 78888999
Q ss_pred EeCCCCCCC-CCcEEEeCcCCCCCC-ChHHHHHhHHHHHHHHcC
Q 008860 364 EVDEYSGTA-VPSIWAVGDVTDRIN-LTPVALMEGGALAKTLFQ 405 (551)
Q Consensus 364 ~vd~~~~t~-~~~vya~GD~~~~~~-~~~~A~~~g~~aa~~i~g 405 (551)
.||+++||+ +|+|||+|||+..+. .+..|+.||+.+|.+|++
T Consensus 349 ~vn~~~rt~~~p~vya~Gd~~~g~~~~i~~a~~~g~~aa~~i~~ 392 (460)
T 1cjc_A 349 VPNMEGRVVDVPGLYCSGWVKRGPTGVITTTMTDSFLTGQILLQ 392 (460)
T ss_dssp CCEETTEETTCTTEEECTHHHHCTTCCHHHHHHHHHHHHHHHHH
T ss_pred eECCCCcCcCCCCEEEEEeCCcCCCccHHHHHHHHHHHHHHHHH
Confidence 999999998 799999999997654 567899999999999874
|
| >2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=3e-30 Score=271.02 Aligned_cols=294 Identities=16% Similarity=0.120 Sum_probs=194.6
Q ss_pred CCccEEEECCChHHHHHHHHHHhCCC--cEEEEccCCCCCCCCCCCCCCCeeccCCCcc------hHHH-------HH--
Q 008860 71 YDFDLFTIGAGSGGVRASRFAANFGA--SVAICELPFSTISSETTGGVGGTCVLRGCVP------KKLL-------VY-- 133 (551)
Q Consensus 71 ~~~dVvIIGgG~aGl~aA~~l~~~G~--~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p------~~~l-------~~-- 133 (551)
+.+||+|||||++|+++|..|++.|. +|+|||+ ...+||.|.+.+|.. .... ..
T Consensus 5 ~~~dV~IIGaG~aGl~aA~~L~~~G~~~~V~v~E~---------~~~~GG~~~~~~~~~~~~~ip~~~~~~~~~~~~~g~ 75 (447)
T 2gv8_A 5 TIRKIAIIGAGPSGLVTAKALLAEKAFDQVTLFER---------RGSPGGVWNYTSTLSNKLPVPSTNPILTTEPIVGPA 75 (447)
T ss_dssp SCCEEEEECCSHHHHHHHHHHHTTTCCSEEEEECS---------SSSSSTTCSCCSCCCSCCCSSBCCTTCCCCCBCCSS
T ss_pred CCCEEEEECccHHHHHHHHHHHhcCCCCCeEEEec---------CCCCCCeecCCCCCCccccccccccccccccccccc
Confidence 45899999999999999999999999 9999993 456899998766522 1000 00
Q ss_pred -----hhhh--------hhHhhhccCCCcccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEe-EEEEec--
Q 008860 134 -----ASKF--------SHEFDESNGFGWKYGTEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIEG-RGKIVD-- 197 (551)
Q Consensus 134 -----~~~~--------~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~i~-- 197 (551)
.... ......+..+.+............+..+... ..++.+..+..+ ++..++
T Consensus 76 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-----------~~~~~~~~i~~~t~V~~v~~~ 144 (447)
T 2gv8_A 76 ALPVYPSPLYRDLQTNTPIELMGYCDQSFKPQTLQFPHRHTIQEYQRI-----------YAQPLLPFIKLATDVLDIEKK 144 (447)
T ss_dssp SCCBCCCCCCTTCBCSSCHHHHSCTTCCCCTTCCSSCBHHHHHHHHHH-----------HHGGGGGGEECSEEEEEEEEE
T ss_pred ccCCccCchhhhhccCCCHHHhccCCCCCCCCCCCCCCHHHHHHHHHH-----------HHHHhhCeEEeCCEEEEEEeC
Confidence 0000 0001111111111110111122232222222 222222222222 233332
Q ss_pred CC--EEEE-c---CE---EEEeCeEEEcCCC--CCCCCCCCCCCc--------eecchhhhcCCC-CCCeEEEEcCcHHH
Q 008860 198 PH--TVDV-D---GK---LYSARHILISVGG--RPFIPDIPGSEY--------AIDSDAALDLPS-KPEKIAIVGGGYIA 257 (551)
Q Consensus 198 ~~--~v~v-~---g~---~~~~d~lviAtG~--~p~~p~i~g~~~--------~~~~~~~~~~~~-~~~~vvViG~G~~g 257 (551)
.. .+.+ + ++ ++.||+||+|||. .|+.|++||.+. ++++.++..... .+++|+|||+|++|
T Consensus 145 ~~~~~V~~~~~~~G~~~~~~~~d~VVvAtG~~s~p~~p~i~G~~~~~~~~~g~v~~~~~~~~~~~~~~k~VvVvG~G~sg 224 (447)
T 2gv8_A 145 DGSWVVTYKGTKAGSPISKDIFDAVSICNGHYEVPYIPNIKGLDEYAKAVPGSVLHSSLFREPELFVGESVLVVGGASSA 224 (447)
T ss_dssp TTEEEEEEEESSTTCCEEEEEESEEEECCCSSSSBCBCCCBTHHHHHHHSTTSEEEGGGCCCGGGGTTCCEEEECSSHHH
T ss_pred CCeEEEEEeecCCCCeeEEEEeCEEEECCCCCCCCCCCCCCChhhhhccCCccEEEecccCChhhcCCCEEEEEccCcCH
Confidence 22 4444 3 54 7899999999997 889999999642 455554443322 47899999999999
Q ss_pred HHHHHHHHhCCCe-EEEEeecCccCCCCCHHHHHHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEECCCeE-EEeeEE
Q 008860 258 LEFAGIFSGLTSE-VHVFIRQKKVLRGFDEDIRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTNKGTV-DGFSHV 335 (551)
Q Consensus 258 ~e~a~~l~~~g~~-Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~G~~-i~~d~v 335 (551)
+|+|..|++.+.+ |+++++.+.+ ++..||.+ +..|+++..+++ .|.+.||+. +++|.|
T Consensus 225 ~e~A~~l~~~~~~~V~l~~r~~~~---------------l~~~~i~~--~~~v~~~~~~~~---~v~~~dG~~~~~~D~v 284 (447)
T 2gv8_A 225 NDLVRHLTPVAKHPIYQSLLGGGD---------------IQNESLQQ--VPEITKFDPTTR---EIYLKGGKVLSNIDRV 284 (447)
T ss_dssp HHHHHHHTTTSCSSEEEECTTCCS---------------CBCSSEEE--ECCEEEEETTTT---EEEETTTEEECCCSEE
T ss_pred HHHHHHHHHHhCCcEEEEeCCCCc---------------CCCCCeEE--ecCeEEEecCCC---EEEECCCCEeccCCEE
Confidence 9999999999999 9999998764 34567774 467888864433 478889986 789999
Q ss_pred EEecCcCCCCCC-----CCccccCeeecCCCCeEeCCCCC---CCCCcEEEeCcCCCCCCChHHHHHhHHHHHHHHcCCC
Q 008860 336 MFATGRRPNTKN-----LGLEKVGVKMTKNGAIEVDEYSG---TAVPSIWAVGDVTDRINLTPVALMEGGALAKTLFQAE 407 (551)
Q Consensus 336 i~a~G~~p~~~~-----l~l~~~gl~~~~~G~i~vd~~~~---t~~~~vya~GD~~~~~~~~~~A~~~g~~aa~~i~g~~ 407 (551)
|+|||+.|+.++ +.....++.. ++.+.++.+.+ ++.|+||++||+.... .++.|..||+++|+++.|..
T Consensus 285 i~atG~~~~~~~l~~~~l~~~~~~i~~--~~~~~~~~~~~v~~~~~p~l~~~G~~~~~~-~~~~a~~qa~~~a~~~~g~~ 361 (447)
T 2gv8_A 285 IYCTGYLYSVPFPSLAKLKSPETKLID--DGSHVHNVYQHIFYIPDPTLAFVGLALHVV-PFPTSQAQAAFLARVWSGRL 361 (447)
T ss_dssp EECCCBCCCCCCHHHHSCCSTTTCCCS--SSSSCCSEETTTEETTCTTEEESSCCBSSC-HHHHHHHHHHHHHHHHTTSS
T ss_pred EECCCCCcCCCCCcccccccccCceec--CCCcccccccccccCCCCcEEEEecccccc-CchHHHHHHHHHHHHHcCCC
Confidence 999999999987 5311123333 35566666666 6899999999998764 68899999999999999853
|
| >3hyw_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3hyv_A* 3hyx_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=7.6e-31 Score=273.90 Aligned_cols=278 Identities=17% Similarity=0.167 Sum_probs=190.1
Q ss_pred ccEEEECCChHHHHHHHHHHhC--CCcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhhccCCCcc
Q 008860 73 FDLFTIGAGSGGVRASRFAANF--GASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDESNGFGWK 150 (551)
Q Consensus 73 ~dVvIIGgG~aGl~aA~~l~~~--G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~ 150 (551)
.+|||||||+||+++|.+|++. +.+|+|||+ .... .+.|....+..... .....
T Consensus 3 K~VvIIGgG~aGl~aA~~L~~~~~~~~VtlI~~---------~~~~-------~~~p~l~~v~~g~~-----~~~~i--- 58 (430)
T 3hyw_A 3 KHVVVIGGGVGGIATAYNLRNLMPDLKITLISD---------RPYF-------GFTPAFPHLAMGWR-----KFEDI--- 58 (430)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHCTTCEEEEECS---------SSEE-------ECGGGHHHHHHTCS-----CGGGS---
T ss_pred CcEEEECCCHHHHHHHHHHhccCcCCeEEEEcC---------CCCC-------ccCccHHHHhcCCC-----CHHHh---
Confidence 4799999999999999999984 479999992 1110 01121111100000 00000
Q ss_pred cCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEeEEEEecC--CEEEE-cCEEEEeCeEEEcCCCCCCCCCCC
Q 008860 151 YGTEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIEGRGKIVDP--HTVDV-DGKLYSARHILISVGGRPFIPDIP 227 (551)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~i~~--~~v~v-~g~~~~~d~lviAtG~~p~~p~i~ 227 (551)
..+ +..++.+.+|+++.+++..+|+ ++|.+ +++++.||+||||||+++. +++|
T Consensus 59 -----~~~------------------~~~~~~~~gv~~i~~~v~~Id~~~~~V~~~~g~~i~YD~LViAtG~~~~-~~i~ 114 (430)
T 3hyw_A 59 -----SVP------------------LAPLLPKFNIEFINEKAESIDPDANTVTTQSGKKIEYDYLVIATGPKLV-FGAE 114 (430)
T ss_dssp -----EEE------------------STTTGGGGTEEEECSCEEEEETTTTEEEETTCCEEECSEEEECCCCEEE-CCSB
T ss_pred -----hhc------------------HHHHHHHCCcEEEEeEEEEEECCCCEEEECCCCEEECCEEEEeCCCCcc-CCcc
Confidence 000 1123445689999999998875 56777 7789999999999999864 4688
Q ss_pred CCC----ceecchhhhcCCC------CCCeEEEEcCcH------HHHHH----HHHHHhCC----CeEEEEeecCccC--
Q 008860 228 GSE----YAIDSDAALDLPS------KPEKIAIVGGGY------IALEF----AGIFSGLT----SEVHVFIRQKKVL-- 281 (551)
Q Consensus 228 g~~----~~~~~~~~~~~~~------~~~~vvViG~G~------~g~e~----a~~l~~~g----~~Vtlv~~~~~~l-- 281 (551)
|.+ .+.+.++...+.+ ..+.++|+|++. .+.|+ +..+.+.| .+|++++..+.+.
T Consensus 115 G~~e~~~~~~~~~~a~~~~~~l~~~~~~~~~vv~gg~~gve~~~~~~e~a~~~~~~l~~~g~~~~v~v~~~~~~~~l~~~ 194 (430)
T 3hyw_A 115 GQEENSTSICTAEHALETQKKLQELYANPGPVVIGAIPGVSCFGPAYEFALMLHYELKKRGIRYKVPMTFITSEPYLGHF 194 (430)
T ss_dssp THHHHSCCCSSHHHHHHHHHHHHHHHHSCCCEEEEECTTCCCCHHHHHHHHHHHHHHHHTTCGGGCCEEEECSSSSTTCT
T ss_pred CcccCcCCcccHHHHHHHHHHHHhhccCCceEEEeCCCcEEEhHHHHHHHHHHHHHHHHhcccccceeeeecccchhhhc
Confidence 853 2344555443221 123455555542 23343 34455555 4788888776543
Q ss_pred -CCCCHHHHHHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEECCC--eEEEeeEEEEecCcCCCCCCCCccccC--ee
Q 008860 282 -RGFDEDIRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTNKG--TVDGFSHVMFATGRRPNTKNLGLEKVG--VK 356 (551)
Q Consensus 282 -~~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~G--~~i~~d~vi~a~G~~p~~~~l~l~~~g--l~ 356 (551)
+...+...+.+.+.++++||++++++.|++++. ++ +.+...+| +++++|.+++++|.+|+.. +...+ +.
T Consensus 195 ~~~~~~~~~~~l~~~l~~~GV~~~~~~~v~~v~~--~~-~~~~~~~g~~~~i~~d~vi~~~G~~~~~~---~~~~~~~l~ 268 (430)
T 3hyw_A 195 GVGGIGASKRLVEDLFAERNIDWIANVAVKAIEP--DK-VIYEDLNGNTHEVPAKFTMFMPSFQGPEV---VASAGDKVA 268 (430)
T ss_dssp TTTCSTTHHHHHHHHHHHTTCEEECSCEEEEECS--SE-EEEECTTSCEEEEECSEEEEECEEECCHH---HHTTCTTTB
T ss_pred cchhhHHHHHHHHHHHHhCCeEEEeCceEEEEeC--Cc-eEEEeeCCCceEeecceEEEeccCCCchH---HHhcccccc
Confidence 235567788899999999999999999999953 33 55555454 4799999999999999753 33333 44
Q ss_pred ecCCCCeEeCCCCC-CCCCcEEEeCcCCCC------------CCChHHHHHhHHHHHHHHc
Q 008860 357 MTKNGAIEVDEYSG-TAVPSIWAVGDVTDR------------INLTPVALMEGGALAKTLF 404 (551)
Q Consensus 357 ~~~~G~i~vd~~~~-t~~~~vya~GD~~~~------------~~~~~~A~~~g~~aa~~i~ 404 (551)
.+.+|+|.||++|| |++|||||+|||+.. ++++..|.+||+++|+||.
T Consensus 269 ~~~~g~i~vd~~lq~t~~~~IfAiGD~a~~p~~~~~~~~~~~pk~a~~A~~qg~~~A~Ni~ 329 (430)
T 3hyw_A 269 NPANKMVIVNRCFQNPTYKNIFGVGVVTAIPPIEKTPIPTGVPKTGMMIEQMAMAVAHNIV 329 (430)
T ss_dssp CTTTCCBCCCTTSBCSSSTTEEECSTTBCCCCSSCCSSCCCCCCCHHHHHHHHHHHHHHHH
T ss_pred cCCceEEEecccccCCCCCCEEEeccEEecCCcccCcCcCccchHHHHHHHHHHHHHHHHH
Confidence 45667899999999 899999999999963 4678899999999999987
|
| >1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=7.7e-31 Score=290.46 Aligned_cols=273 Identities=17% Similarity=0.265 Sum_probs=199.8
Q ss_pred CCCccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhhccCCCc
Q 008860 70 HYDFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDESNGFGW 149 (551)
Q Consensus 70 ~~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~ 149 (551)
...+||+|||||+||++||..|++.|++|+|||+ ...+||+|....++|..
T Consensus 387 ~~~~~VvIIGgGpAGl~aA~~L~~~G~~Vtlie~---------~~~~GG~~~~~~~~pg~-------------------- 437 (729)
T 1o94_A 387 KNKDSVLIVGAGPSGSEAARVLMESGYTVHLTDT---------AEKIGGHLNQVAALPGL-------------------- 437 (729)
T ss_dssp SSCCEEEEECCSHHHHHHHHHHHHTTCEEEEECS---------SSSTTTTHHHHTTSTTC--------------------
T ss_pred cCCceEEEECCCHHHHHHHHHHHHCCCeEEEEeC---------CCCcCCeeeecccCCCh--------------------
Confidence 4468999999999999999999999999999993 45688887655444421
Q ss_pred ccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEeEEEEecCCEEEE-cCEEEEeCeEEEcCCCC--------
Q 008860 150 KYGTEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIEGRGKIVDPHTVDV-DGKLYSARHILISVGGR-------- 220 (551)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~i~~~~v~v-~g~~~~~d~lviAtG~~-------- 220 (551)
.+|..+..+....++.+. .....++++..+ ..+.+ ++..+.||+||+|||+.
T Consensus 438 -------~~~~~~~~~~~~~i~~~~-----~~~~~~v~i~~~-------~~v~~~~~~~~~~d~vviAtG~~~~~~~~~~ 498 (729)
T 1o94_A 438 -------GEWSYHRDYRETQITKLL-----KKNKESQLALGQ-------KPMTADDVLQYGADKVIIATGARWNTDGTNC 498 (729)
T ss_dssp -------GGGHHHHHHHHHHHHHHH-----HHSTTCEEECSC-------CCCCHHHHHTSCCSEEEECCCEEECSSCCCT
T ss_pred -------HHHHHHHHHHHHHHHHhh-----cccCCceEEEeC-------eEEehhhccccCCCEEEEcCCCCcccccccC
Confidence 122333333222222110 011124554322 22333 34467899999999988
Q ss_pred CCCCCCCCCC----ceecchhhhcCCC-CCCeEEEEc--CcHHHHHHHHHHHhCCCeEEEEeecCccCCC--CCHHHHHH
Q 008860 221 PFIPDIPGSE----YAIDSDAALDLPS-KPEKIAIVG--GGYIALEFAGIFSGLTSEVHVFIRQKKVLRG--FDEDIRDF 291 (551)
Q Consensus 221 p~~p~i~g~~----~~~~~~~~~~~~~-~~~~vvViG--~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~~--~~~~~~~~ 291 (551)
|..|++||.+ .+++..+++.... .+++|+||| +|++|+|+|..|++.|.+|+++++.+ +++. ++.. ...
T Consensus 499 p~~~~ipG~~~~~~~v~~~~~~l~~~~~~gk~VvVIG~GgG~~g~e~A~~l~~~G~~Vtlv~~~~-l~~~~~~~~~-~~~ 576 (729)
T 1o94_A 499 LTHDPIPGADASLPDQLTPEQVMDGKKKIGKRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVH-LANYMHFTLE-YPN 576 (729)
T ss_dssp TTSSCCTTCCTTSTTEECHHHHHHCCSCCCSEEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSC-TTHHHHHTTC-HHH
T ss_pred ccCCCCCCccccCCCEEEHHHHhcCCCCCCCeEEEEcCCCCchHHHHHHHHHHcCCEEEEEeccc-cccccccccc-HHH
Confidence 5677899876 5778777766443 467999999 99999999999999999999999988 5542 2322 467
Q ss_pred HHHHHHhcCcEEEcCcccEEEEEcCCceEEEEE--CCC-eE------------------EEeeEEEEecCcCCCCCCCCc
Q 008860 292 VAEQMSLRGIEFHTEESPQAILKSTDGSLSVKT--NKG-TV------------------DGFSHVMFATGRRPNTKNLGL 350 (551)
Q Consensus 292 l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~--~~G-~~------------------i~~d~vi~a~G~~p~~~~l~l 350 (551)
+.+.|++.||++++++.+++|..+ + +.+.. .++ ++ +++|.||+|+|..|++++ +
T Consensus 577 ~~~~l~~~GV~i~~~~~v~~i~~~--~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~aD~Vv~a~G~~p~~~l--~ 651 (729)
T 1o94_A 577 MMRRLHELHVEELGDHFCSRIEPG--R-MEIYNIWGDGSKRTYRGPGVSPRDANTSHRWIEFDSLVLVTGRHSECTL--W 651 (729)
T ss_dssp HHHHHHHTTCEEECSEEEEEEETT--E-EEEEETTCSCSCCCCCCTTSCSSCCCCCCEEEECSEEEEESCEEECCHH--H
T ss_pred HHHHHHhCCCEEEcCcEEEEEECC--e-EEEEEecCCceEEecccccccccccCCcceeeeCCEEEECCCCCCChHH--H
Confidence 788899999999999999999743 3 44432 233 22 899999999999999886 3
Q ss_pred cccCeeecCCCCeEeCCCCCCCCCcEEEeCcCCCCCCChHHHHHhHHHHHHHHcCC
Q 008860 351 EKVGVKMTKNGAIEVDEYSGTAVPSIWAVGDVTDRINLTPVALMEGGALAKTLFQA 406 (551)
Q Consensus 351 ~~~gl~~~~~G~i~vd~~~~t~~~~vya~GD~~~~~~~~~~A~~~g~~aa~~i~g~ 406 (551)
+..+ ..+|++++|++|+|||+|||+. +..+..|+.||+.+|.+|.+.
T Consensus 652 ~~l~--------~~vd~~~~t~~~~VyAiGD~~~-~~~~~~A~~~G~~aA~~i~~~ 698 (729)
T 1o94_A 652 NELK--------ARESEWAENDIKGIYLIGDAEA-PRLIADATFTGHRVAREIEEA 698 (729)
T ss_dssp HHHH--------HTGGGTGGGTCCEEEECGGGTS-CCCHHHHHHHHHHHHHTTTSS
T ss_pred HHHh--------hhcccccccCCCCeEEEeCccc-hhhHHHHHHHHHHHHHHhhhh
Confidence 3321 1368899999999999999997 567788999999999999863
|
| >3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex} | Back alignment and structure |
|---|
Probab=99.96 E-value=1e-30 Score=288.40 Aligned_cols=268 Identities=15% Similarity=0.208 Sum_probs=202.4
Q ss_pred CCCCCccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhhccCC
Q 008860 68 PSHYDFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDESNGF 147 (551)
Q Consensus 68 ~~~~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~ 147 (551)
++...+||+|||||+||++||+.|++.|++|+|||+ ...+||+|....+.|.
T Consensus 387 ~~~~~~~VvIIGgG~AGl~aA~~La~~G~~V~liE~---------~~~~GG~~~~~~~~p~------------------- 438 (690)
T 3k30_A 387 AKESDARVLVVGAGPSGLEAARALGVRGYDVVLAEA---------GRDLGGRVTQESALPG------------------- 438 (690)
T ss_dssp CCSSCCEEEEECCSHHHHHHHHHHHHHTCEEEEECS---------SSSSCTHHHHHHTSTT-------------------
T ss_pred cccccceEEEECCCHHHHHHHHHHHHCCCeEEEEec---------CCCCCCEeeeccCCCc-------------------
Confidence 345578999999999999999999999999999993 4568888754333331
Q ss_pred CcccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhC-CeEEEEeEEEEecCCEEEE-cCEEEEeCeEEEcCCCC-----
Q 008860 148 GWKYGTEPQHDWSTLIANKNAELQRLTGIYKNILINA-GITLIEGRGKIVDPHTVDV-DGKLYSARHILISVGGR----- 220 (551)
Q Consensus 148 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~i~~~~v~v-~g~~~~~d~lviAtG~~----- 220 (551)
..++..+..+ ....+.+. +++++.++ .+.. +.+.+.||+||+|||+.
T Consensus 439 --------~~~~~~~~~~-----------~~~~~~~~~gv~~~~~~-------~v~~~~~~~~~~d~lvlAtG~~~~~~~ 492 (690)
T 3k30_A 439 --------LSAWGRVKEY-----------REAVLAELPNVEIYRES-------PMTGDDIVEFGFEHVITATGATWRTDG 492 (690)
T ss_dssp --------CGGGGHHHHH-----------HHHHHHTCTTEEEESSC-------CCCHHHHHHTTCCEEEECCCEEECSSC
T ss_pred --------hhHHHHHHHH-----------HHHHHHHcCCCEEEECC-------eecHHHHhhcCCCEEEEcCCCcccccc
Confidence 1122332222 22344554 78877653 1222 33467899999999998
Q ss_pred ---CCCCCCCCCC--ceecchhhhcCC-CCCCeEEEEc--CcHHHHHHHHHHHhCCCeEEEEeecCccCCCC-CHHHHHH
Q 008860 221 ---PFIPDIPGSE--YAIDSDAALDLP-SKPEKIAIVG--GGYIALEFAGIFSGLTSEVHVFIRQKKVLRGF-DEDIRDF 291 (551)
Q Consensus 221 ---p~~p~i~g~~--~~~~~~~~~~~~-~~~~~vvViG--~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~~~-~~~~~~~ 291 (551)
|..|++||.+ .+++..+++... ..+++++||| +|.+|+|+|..|.+.|.+|+++++.+.+++.. ++.....
T Consensus 493 ~~~~~~~~i~G~~~~~v~~~~~~l~~~~~~g~~VvViG~ggG~~g~e~A~~L~~~g~~Vtlv~~~~~l~~~~~~~~~~~~ 572 (690)
T 3k30_A 493 VARFHTTALPIAEGMQVLGPDDLFAGRLPDGKKVVVYDDDHYYLGGVVAELLAQKGYEVSIVTPGAQVSSWTNNTFEVNR 572 (690)
T ss_dssp CSSSCSSCCCBCTTSEEECHHHHHTTCCCSSSEEEEEECSCSSHHHHHHHHHHHTTCEEEEEESSSSTTGGGGGGTCHHH
T ss_pred ccccCCCCCCCCCCCcEEcHHHHhCCCCCCCCEEEEEcCCCCccHHHHHHHHHhCCCeeEEEecccccccccccchhHHH
Confidence 4577888875 467777776643 3467899999 99999999999999999999999998877653 3566788
Q ss_pred HHHHHHhcCcEEEcCcccEEEEEcCCceEEEEE---CCCeEEEeeEEEEecCcCCCCCCCCccccCeeecCCCCeEeCCC
Q 008860 292 VAEQMSLRGIEFHTEESPQAILKSTDGSLSVKT---NKGTVDGFSHVMFATGRRPNTKNLGLEKVGVKMTKNGAIEVDEY 368 (551)
Q Consensus 292 l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~---~~G~~i~~d~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~ 368 (551)
+.+.+++.||+++++++|++++.++ ..+.. .+++++++|.||+|+|++|++.+ ++..+. .+.
T Consensus 573 l~~~l~~~GV~i~~~~~V~~i~~~~---~~v~~~~~~~~~~i~aD~VV~A~G~~p~~~l--~~~l~~----~~~------ 637 (690)
T 3k30_A 573 IQRRLIENGVARVTDHAVVAVGAGG---VTVRDTYASIERELECDAVVMVTARLPREEL--YLDLVA----RRD------ 637 (690)
T ss_dssp HHHHHHHTTCEEEESEEEEEEETTE---EEEEETTTCCEEEEECSEEEEESCEEECCHH--HHHHHH----HHH------
T ss_pred HHHHHHHCCCEEEcCcEEEEEECCe---EEEEEccCCeEEEEECCEEEECCCCCCChHH--HHHHhh----hhc------
Confidence 8999999999999999999997532 44443 35568999999999999999886 333221 111
Q ss_pred CCCCCCcEEEeCcCCCCCCChHHHHHhHHHHHHHHcCC
Q 008860 369 SGTAVPSIWAVGDVTDRINLTPVALMEGGALAKTLFQA 406 (551)
Q Consensus 369 ~~t~~~~vya~GD~~~~~~~~~~A~~~g~~aa~~i~g~ 406 (551)
+|+.|+|||+|||+.. +....|+.||+.+|.||.+.
T Consensus 638 -~t~~~~VyaiGD~~~~-~~~~~A~~~g~~aa~~i~~~ 673 (690)
T 3k30_A 638 -AGEIASVRGIGDAWAP-GTIAAAVWSGRRAAEEFDAV 673 (690)
T ss_dssp -HTSCSEEEECGGGTSC-BCHHHHHHHHHHHHHHTTCC
T ss_pred -ccCCCCEEEEeCCCch-hhHHHHHHHHHHHHHHHHhh
Confidence 7899999999999985 45667999999999999864
|
| >2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=3.5e-29 Score=284.51 Aligned_cols=271 Identities=18% Similarity=0.154 Sum_probs=197.7
Q ss_pred CCccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhhccCCCcc
Q 008860 71 YDFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDESNGFGWK 150 (551)
Q Consensus 71 ~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~ 150 (551)
.++||+|||||+||++||..|++.|++|+|||+ ...+||+|.+ | |+. .
T Consensus 127 ~~~dVvVIGaGpAGl~AA~~la~~G~~V~lie~---------~~~~GG~~~~--~-~k~--------------------~ 174 (965)
T 2gag_A 127 VHTDVLVVGAGPAGLAAAREASRSGARVMLLDE---------RAEAGGTLLD--T-AGE--------------------Q 174 (965)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHHTTCCEEEECS---------SSSSSGGGGG--S-SCC--------------------E
T ss_pred cCCCEEEECCCHHHHHHHHHHHhCCCcEEEEeC---------CCCCCceecc--C-Ccc--------------------c
Confidence 468999999999999999999999999999993 4568888872 2 210 0
Q ss_pred cCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHh-CCeEEEEeE-EEEecCC-EE----------EE---------cCEEE
Q 008860 151 YGTEPQHDWSTLIANKNAELQRLTGIYKNILIN-AGITLIEGR-GKIVDPH-TV----------DV---------DGKLY 208 (551)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~-~~~i~~~-~v----------~v---------~g~~~ 208 (551)
+.+. ...++. ....+.+.+ .+++++.+. +..++.. .+ .+ ++..+
T Consensus 175 i~~~---~~~~~~-----------~~~~~~l~~~~~v~~~~~~~V~~i~~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~i 240 (965)
T 2gag_A 175 IDGM---DSSAWI-----------EQVTSELAEAEETTHLQRTTVFGSYDANYLIAAQRRTVHLDGPSGPGVSRERIWHI 240 (965)
T ss_dssp ETTE---EHHHHH-----------HHHHHHHHHSTTEEEESSEEEEEEETTTEEEEEEECSTTCSSCCCTTCCSEEEEEE
T ss_pred cCCC---CHHHHH-----------HHHHHHHhhcCCcEEEeCCEEEeeecCCceeeeEeecccccccccccCCCCceEEE
Confidence 0000 001111 111222334 378887653 3333321 11 00 11368
Q ss_pred EeCeEEEcCCCCCCCCCCCCCC--ceecchhh---hc-CCC-CCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccC
Q 008860 209 SARHILISVGGRPFIPDIPGSE--YAIDSDAA---LD-LPS-KPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVL 281 (551)
Q Consensus 209 ~~d~lviAtG~~p~~p~i~g~~--~~~~~~~~---~~-~~~-~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l 281 (551)
.||+||||||+.|+.|++||.+ .+++..++ +. ... .+++++|||+|++|+|+|..|.+.|.+|+++++.+.++
T Consensus 241 ~~d~lVlATGs~p~~~~ipG~~~~gv~~~~~~~~~l~~~~~~~gk~vvViGgG~~g~E~A~~L~~~G~~Vtvv~~~~~~~ 320 (965)
T 2gag_A 241 RAKQVVLATGAHERPIVFENNDRPGIMLAGAVRSYLNRYGVRAGARIAVATTNDSAYELVRELAATGGVVAVIDARSSIS 320 (965)
T ss_dssp EEEEEEECCCEEECCCCCBTCCSTTEEEHHHHHHHHHTTCEESCSSEEEEESSTTHHHHHHHHGGGTCCSEEEESCSSCC
T ss_pred ECCEEEECCCCccCCCCCCCCCCCCEEEhHHHHHHHHhcCCCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEECCCccc
Confidence 9999999999999999999865 35554332 32 222 24899999999999999999999999999999988764
Q ss_pred CCCCHHHHHHHHHHHHhcCcEEEcCcccEEEEEc-CCceEEEEECC-------C--eEEEeeEEEEecCcCCCCCCCCcc
Q 008860 282 RGFDEDIRDFVAEQMSLRGIEFHTEESPQAILKS-TDGSLSVKTNK-------G--TVDGFSHVMFATGRRPNTKNLGLE 351 (551)
Q Consensus 282 ~~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~-~~~~~~V~~~~-------G--~~i~~d~vi~a~G~~p~~~~l~l~ 351 (551)
+ . .+.+++.||++++++.|+++..+ +++...|++.+ | +++++|.|++|+|++|++++ +.
T Consensus 321 ~----~-----~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~~~~~~~~~~~G~~~~i~~D~Vv~a~G~~P~~~l--~~ 389 (965)
T 2gag_A 321 A----A-----AAQAVADGVQVISGSVVVDTEADENGELSAIVVAELDEARELGGTQRFEADVLAVAGGFNPVVHL--HS 389 (965)
T ss_dssp H----H-----HHHHHHTTCCEEETEEEEEEEECTTSCEEEEEEEEECTTCCEEEEEEEECSEEEEECCEEECCHH--HH
T ss_pred h----h-----HHHHHhCCeEEEeCCEeEEEeccCCCCEEEEEEEeccccCCCCceEEEEcCEEEECCCcCcChHH--HH
Confidence 3 1 56788999999999999999874 33323455543 5 57999999999999999986 32
Q ss_pred ccCeeecCCCCeEeCCCCC-----CCCCcEEEeCcCCCCCCChHHHHHhHHHHHHHHcC
Q 008860 352 KVGVKMTKNGAIEVDEYSG-----TAVPSIWAVGDVTDRINLTPVALMEGGALAKTLFQ 405 (551)
Q Consensus 352 ~~gl~~~~~G~i~vd~~~~-----t~~~~vya~GD~~~~~~~~~~A~~~g~~aa~~i~g 405 (551)
. ..|+|.+|++++ |+.|+|||+|||++.+.+. .|..||++||.+|++
T Consensus 390 ~------~~g~i~vd~~~~~~v~~ts~p~IyAaGD~a~~~~l~-~A~~~G~~aA~~i~~ 441 (965)
T 2gag_A 390 Q------RQGKLDWDTTIHAFVPADAVANQHLAGAMTGRLDTA-SALSTGAATGAAAAT 441 (965)
T ss_dssp H------TTCCEEEETTTTEEEECSCCTTEEECGGGGTCCSHH-HHHHHHHHHHHHHHH
T ss_pred h------CCCcEEEcCcccccccCCCCCCEEEEEecCCchhHH-HHHHHHHHHHHHHHH
Confidence 2 246799999887 8999999999999977654 899999999999874
|
| >3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.5e-28 Score=259.45 Aligned_cols=220 Identities=18% Similarity=0.233 Sum_probs=151.4
Q ss_pred HHHHhCCeEEEEeE-EEEecC----C-----EEEE-cCE----EEEeCeEEEcCCCCCCCCC-CCCCC---ceecchhhh
Q 008860 179 NILINAGITLIEGR-GKIVDP----H-----TVDV-DGK----LYSARHILISVGGRPFIPD-IPGSE---YAIDSDAAL 239 (551)
Q Consensus 179 ~~~~~~~v~~~~~~-~~~i~~----~-----~v~v-~g~----~~~~d~lviAtG~~p~~p~-i~g~~---~~~~~~~~~ 239 (551)
...++.++++..+. +..++. . .+.+ ++. ++.||+||+|||+.|.+|+ +++.. .+++..+..
T Consensus 135 ~~~~~~~~~i~~~~~V~~i~~~~~~~~~~~~~V~~~~g~g~~~~~~~d~lVlAtG~~p~~p~~~~~~~~~~~~~~~~~~~ 214 (463)
T 3s5w_A 135 WVASHFQEQSRYGEEVLRIEPMLSAGQVEALRVISRNADGEELVRTTRALVVSPGGTPRIPQVFRALKGDGRVFHHSQYL 214 (463)
T ss_dssp HHHTTCTTTEEESEEEEEEEEEEETTEEEEEEEEEEETTSCEEEEEESEEEECCCCEECCCGGGGGGTTCTTEEEGGGHH
T ss_pred HHHHHcCCeEEeCCEEEEEEEecCCCceEEEEEEEecCCCceEEEEeCEEEECCCCCCCCcchhhhcCCCCcEEECHHHH
Confidence 33445566666653 444432 1 3333 443 7999999999999988876 33321 334333322
Q ss_pred c-CCC------CCCeEEEEcCcHHHHHHHHHHHhC--CCeEEEEeecCccCCCC--------------------CHHHHH
Q 008860 240 D-LPS------KPEKIAIVGGGYIALEFAGIFSGL--TSEVHVFIRQKKVLRGF--------------------DEDIRD 290 (551)
Q Consensus 240 ~-~~~------~~~~vvViG~G~~g~e~a~~l~~~--g~~Vtlv~~~~~~l~~~--------------------~~~~~~ 290 (551)
. +.. .+++|+|||+|.+|+|+|..|.+. +.+|++++|.+.+++.. +++...
T Consensus 215 ~~~~~~~~~~~~~~~vvVvGgG~sg~e~a~~l~~~~~~~~Vt~v~r~~~~~p~~~~~~~~~~~~p~~~~~~~~l~~~~~~ 294 (463)
T 3s5w_A 215 EHMAKQPCSSGKPMKIAIIGGGQSAAEAFIDLNDSYPSVQADMILRASALKPADDSPFVNEVFAPKFTDLIYSREHAERE 294 (463)
T ss_dssp HHHCC-------CEEEEEECCSHHHHHHHHHHHHHCTTEEEEEECSSSSCCBCCCCHHHHGGGSHHHHHHHHHSCHHHHH
T ss_pred hhHHHhhhcccCCCeEEEECCCHhHHHHHHHHHhcCCCCeEEEEEeCCCCcCccCCccchhccChhHHHHHhcCCHHHHH
Confidence 2 222 478999999999999999999998 89999999998775521 222222
Q ss_pred HHHHHHHh--------------------------cCcEEEcCcccEEEEEcCCceEEEEEC---CCe--EEEeeEEEEec
Q 008860 291 FVAEQMSL--------------------------RGIEFHTEESPQAILKSTDGSLSVKTN---KGT--VDGFSHVMFAT 339 (551)
Q Consensus 291 ~l~~~l~~--------------------------~Gv~i~~~~~v~~i~~~~~~~~~V~~~---~G~--~i~~d~vi~a~ 339 (551)
.+.+.+.. .||++++++.|++++.++++ +.|.+. +|+ ++++|.||+||
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~~~~~v~~v~~~~~~-~~v~~~~~~~g~~~~~~~D~Vv~At 373 (463)
T 3s5w_A 295 RLLREYHNTNYSVVDTDLIERIYGVFYRQKVSGIPRHAFRCMTTVERATATAQG-IELALRDAGSGELSVETYDAVILAT 373 (463)
T ss_dssp HHHHHTGGGTSSCBCHHHHHHHHHHHHHHHHHCCCCSEEETTEEEEEEEEETTE-EEEEEEETTTCCEEEEEESEEEECC
T ss_pred HHHHHhhccCCCcCCHHHHHHHHHHHHHHHhcCCCCeEEEeCCEEEEEEecCCE-EEEEEEEcCCCCeEEEECCEEEEee
Confidence 23332222 59999999999999887665 667765 665 49999999999
Q ss_pred CcCCC--CCCCCccccCeeecCCCCeEeCCCCCCC-----CCcEEEeCcCCCC-----CCChHHHHHhHHHHHHHHc
Q 008860 340 GRRPN--TKNLGLEKVGVKMTKNGAIEVDEYSGTA-----VPSIWAVGDVTDR-----INLTPVALMEGGALAKTLF 404 (551)
Q Consensus 340 G~~p~--~~~l~l~~~gl~~~~~G~i~vd~~~~t~-----~~~vya~GD~~~~-----~~~~~~A~~~g~~aa~~i~ 404 (551)
|++|+ ..+ +......+ |++.||+++++. .|+|||+|||... +.+...|.+++++++.++-
T Consensus 374 G~~p~~~~~~--l~~l~~~~---g~i~v~~~~~~~~~~~~~~~Ifa~G~~~~~~g~~~~~l~~~a~r~~~i~~~~~~ 445 (463)
T 3s5w_A 374 GYERQLHRQL--LEPLAEYL---GDHEIGRDYRLQTDERCKVAIYAQGFSQASHGLSDTLLSVLPVRAEEISGSLYQ 445 (463)
T ss_dssp CEECCC-CTT--TGGGGGGB---C--CCCTTSBCCBCTTBCSEEEESSCCHHHHCTTTTSSTTHHHHHHHHHHHHHH
T ss_pred CCCCCCccch--hHHHHHHh---CCcccCcccccccCCCCCCeEEEcCCCcccCCcCccchhHHHHHHHHHHHHHHh
Confidence 99999 555 33333222 789999999863 4679999999852 4566789999999877654
|
| >1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 | Back alignment and structure |
|---|
Probab=99.96 E-value=1.4e-28 Score=270.54 Aligned_cols=257 Identities=20% Similarity=0.271 Sum_probs=193.2
Q ss_pred CCCCccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhhccCCC
Q 008860 69 SHYDFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDESNGFG 148 (551)
Q Consensus 69 ~~~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g 148 (551)
....+||+|||||+||++||..|++.|++|+|||+ ...+||++...+++|.+
T Consensus 370 ~~~~~~vvIIGgG~AGl~aA~~l~~~g~~V~lie~---------~~~~gg~~~~~~~~~~~------------------- 421 (671)
T 1ps9_A 370 AVQKKNLAVVGAGPAGLAFAINAAARGHQVTLFDA---------HSEIGGQFNIAKQIPGK------------------- 421 (671)
T ss_dssp CSSCCEEEEECCSHHHHHHHHHHHTTTCEEEEEES---------SSSSCTTHHHHTTSTTC-------------------
T ss_pred CCCCCeEEEECCCHHHHHHHHHHHhCCCeEEEEeC---------CCCCCCeeeccccCCCH-------------------
Confidence 34468999999999999999999999999999993 45678876543333310
Q ss_pred cccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEeEEEEecCCEEEEcCEEE-EeCeEEEcCCCCCCCCCCC
Q 008860 149 WKYGTEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIEGRGKIVDPHTVDVDGKLY-SARHILISVGGRPFIPDIP 227 (551)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~i~~~~v~v~g~~~-~~d~lviAtG~~p~~p~i~ 227 (551)
.++..+. ..+...+++.+++++.++... ...+ .||+||+|||++|+.|++|
T Consensus 422 --------~~~~~~~-----------~~~~~~~~~~gv~~~~~~~v~---------~~~~~~~d~lviAtG~~p~~~~i~ 473 (671)
T 1ps9_A 422 --------EEFYETL-----------RYYRRMIEVTGVTLKLNHTVT---------ADQLQAFDETILASGIVPRTPPID 473 (671)
T ss_dssp --------TTHHHHH-----------HHHHHHHHHHTCEEEESCCCC---------SSSSCCSSEEEECCCEEECCCCCB
T ss_pred --------HHHHHHH-----------HHHHHHHHHcCCEEEeCcEec---------HHHhhcCCEEEEccCCCcCCCCCC
Confidence 1122111 123344556689988864211 1124 8999999999999999999
Q ss_pred CCC--ceecchhhhcCC-CCCCeEEEEcCcHHHHHHHHHHHhCCC-----------------------------------
Q 008860 228 GSE--YAIDSDAALDLP-SKPEKIAIVGGGYIALEFAGIFSGLTS----------------------------------- 269 (551)
Q Consensus 228 g~~--~~~~~~~~~~~~-~~~~~vvViG~G~~g~e~a~~l~~~g~----------------------------------- 269 (551)
|.+ .+++..+.+... ..+++|+|||+|++|+|+|..|++.|.
T Consensus 474 G~~~~~v~~~~~~l~~~~~~~~~VvVIGgG~~g~E~A~~l~~~G~~vtv~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 553 (671)
T 1ps9_A 474 GIDHPKVLSYLDVLRDKAPVGNKVAIIGCGGIGFDTAMYLSQPGESTSQNIAGFCNEWGIDSSLQQAGGLSPQGMQIPRS 553 (671)
T ss_dssp TTTSTTEEEHHHHHTSCCCCCSEEEEECCHHHHHHHHHHHTCCSSCGGGCHHHHHHHTTBCTTCCSGGGBCTTCCCCCCC
T ss_pred CCCCCcEeeHHHHhhCCCCCCCeEEEECCChhHHHHHHHHHhcCCCcccchhhhhhhhcccccccccccccccccccCCC
Confidence 975 367776666543 357899999999999999999998773
Q ss_pred --eEEEEeecCccCCC-CCHHHHHHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEECCC--eEEEeeEEEEecCcCCC
Q 008860 270 --EVHVFIRQKKVLRG-FDEDIRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTNKG--TVDGFSHVMFATGRRPN 344 (551)
Q Consensus 270 --~Vtlv~~~~~~l~~-~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~G--~~i~~d~vi~a~G~~p~ 344 (551)
+|+++++.+..+.. +++.....+.+.|++.||+++++++|++++. ++ +.+. .+| +++++|.||+|+|++|+
T Consensus 554 ~~~v~l~~~~~~~l~~~l~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~--~~-v~~~-~~G~~~~i~~D~Vi~a~G~~p~ 629 (671)
T 1ps9_A 554 PRQIVMLQRKASKPGQGLGKTTGWIHRTTLLSRGVKMIPGVSYQKIDD--DG-LHVV-INGETQVLAVDNVVICAGQEPN 629 (671)
T ss_dssp SSEEEEECSSCSCTTTTSCTTTHHHHHHHHHHTTCEEECSCEEEEEET--TE-EEEE-ETTEEEEECCSEEEECCCEEEC
T ss_pred CcEEEEEEecchhhccccccccHHHHHHHHHhcCCEEEeCcEEEEEeC--Ce-EEEe-cCCeEEEEeCCEEEECCCcccc
Confidence 56677776655543 6777788888999999999999999999973 33 4444 577 57999999999999999
Q ss_pred CCCCCccccCeeecCCCCeEeCCCCCCCCCcEEEeCcCCCCC-CChHHHHHhHHHHHHHH
Q 008860 345 TKNLGLEKVGVKMTKNGAIEVDEYSGTAVPSIWAVGDVTDRI-NLTPVALMEGGALAKTL 403 (551)
Q Consensus 345 ~~~l~l~~~gl~~~~~G~i~vd~~~~t~~~~vya~GD~~~~~-~~~~~A~~~g~~aa~~i 403 (551)
++++ +. ++. ..++||++|||+... ..+..|++||..+|.||
T Consensus 630 ~~l~--~~----l~~------------~g~~v~aiGD~~~~~~~~~~~A~~~g~~aA~~i 671 (671)
T 1ps9_A 630 RALA--QP----LID------------SGKTVHLIGGCDVAMELDARRAIAQGTRLALEI 671 (671)
T ss_dssp CTTH--HH----HHT------------TTCCEEECGGGTCCSSCCHHHHHHHHHHHHHHC
T ss_pred HHHH--HH----HHh------------cCCCEEEECCcCccCchhHHHHHHHHHHHHHhC
Confidence 9863 22 111 226899999999864 46889999999999986
|
| >3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=2.2e-27 Score=253.55 Aligned_cols=297 Identities=18% Similarity=0.293 Sum_probs=192.7
Q ss_pred CccEEEECCChHHHHHHHHHH-hCCCcEEEEccCCCCCCCCCCCCCCCeeccC---CC---cchHHHHHhhhhhhHhhhc
Q 008860 72 DFDLFTIGAGSGGVRASRFAA-NFGASVAICELPFSTISSETTGGVGGTCVLR---GC---VPKKLLVYASKFSHEFDES 144 (551)
Q Consensus 72 ~~dVvIIGgG~aGl~aA~~l~-~~G~~V~liE~~~~~~~~~~~~~~GG~~~~~---g~---~p~~~l~~~~~~~~~~~~~ 144 (551)
++||+|||||++|+++|..|+ +.|++|+|||+ ...+||+|... || +|++.+... +.....
T Consensus 8 ~~dVvIIGaG~aGl~aA~~L~~~~G~~v~viE~---------~~~~GGtw~~~~ypg~~~d~~s~~~~~~--~~~~~~-- 74 (540)
T 3gwf_A 8 TVDAVVIGAGFGGIYAVHKLHHELGLTTVGFDK---------ADGPGGTWYWNRYPGALSDTESHLYRFS--FDRDLL-- 74 (540)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCCEEEEES---------SSSSCTHHHHCCCTTCEEEEEGGGSSCC--SCHHHH--
T ss_pred CCCEEEECcCHHHHHHHHHHHHcCCCCEEEEEC---------CCCCCCcccccCCCCceecCCcceeeec--cccccc--
Confidence 589999999999999999999 89999999993 56789998643 44 443222111 000000
Q ss_pred cCCCcccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCe--EEEEe-EEEEe--cCC----EEEE-cCEEEEeCeEE
Q 008860 145 NGFGWKYGTEPQHDWSTLIANKNAELQRLTGIYKNILINAGI--TLIEG-RGKIV--DPH----TVDV-DGKLYSARHIL 214 (551)
Q Consensus 145 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~~-~~~~i--~~~----~v~v-~g~~~~~d~lv 214 (551)
..+.|.. ...+..++. ..+....++.++ .+..+ ++..+ +.. .+.+ +++++.||+||
T Consensus 75 ~~~~~~~---~~~~~~ei~-----------~~l~~~~~~~g~~~~i~~~~~V~~i~~~~~~~~~~V~~~~G~~i~ad~lV 140 (540)
T 3gwf_A 75 QESTWKT---TYITQPEIL-----------EYLEDVVDRFDLRRHFKFGTEVTSALYLDDENLWEVTTDHGEVYRAKYVV 140 (540)
T ss_dssp HHCCCSB---SEEEHHHHH-----------HHHHHHHHHTTCGGGEEESCCEEEEEEETTTTEEEEEETTSCEEEEEEEE
T ss_pred cCCCCcc---cCCCHHHHH-----------HHHHHHHHHcCCcceeEeccEEEEEEEeCCCCEEEEEEcCCCEEEeCEEE
Confidence 0111110 011222222 222333444455 34333 23322 222 4445 67789999999
Q ss_pred EcCC--CCCCCCCCCCCCc-----eecchhhhcCCCCCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCc-cCCCCCH
Q 008860 215 ISVG--GRPFIPDIPGSEY-----AIDSDAALDLPSKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKK-VLRGFDE 286 (551)
Q Consensus 215 iAtG--~~p~~p~i~g~~~-----~~~~~~~~~~~~~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~-~l~~~~~ 286 (551)
+||| ++|..|++||.+. +++..........+++|+|||+|.+|+|+|..|++.+.+|++++|.+. +++.+++
T Consensus 141 ~AtG~~s~p~~p~ipG~~~f~g~~~~~~~~~~~~~~~~krV~VIG~G~sgve~a~~l~~~~~~Vtv~~r~~~~i~p~~~~ 220 (540)
T 3gwf_A 141 NAVGLLSAINFPNLPGLDTFEGETIHTAAWPEGKSLAGRRVGVIGTGSTGQQVITSLAPEVEHLTVFVRTPQYSVPVGNR 220 (540)
T ss_dssp ECCCSCCSBCCCCCTTGGGCCSEEEEGGGCCSSCCCTTSEEEEECCSHHHHHHHHHHTTTCSEEEEEESSCCCEEECCCC
T ss_pred ECCcccccCCCCCCCCccccCCCEEEeecCCCccccccceEEEECCCchHHHHHHHHHhhCCEEEEEECCCCccccCccC
Confidence 9999 7899999999763 334333334555689999999999999999999999999999999987 3444433
Q ss_pred HHHHHHHHHHH---------------------------------------------------------------------
Q 008860 287 DIRDFVAEQMS--------------------------------------------------------------------- 297 (551)
Q Consensus 287 ~~~~~l~~~l~--------------------------------------------------------------------- 297 (551)
++...+++.++
T Consensus 221 ~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 300 (540)
T 3gwf_A 221 PVNPEQIAEIKADYDRIWERAKNSAVAFGFEESTLPAMSVSEEERNRIFQEAWDHGGGFRFMFGTFGDIATDEAANEAAA 300 (540)
T ss_dssp BCCHHHHHHHHHTHHHHHHHHHTSSSCSSSCCCCCCGGGSCHHHHHHHHHHHHHHCCHHHHHHTSCSCTTTCHHHHHHHH
T ss_pred CCCHHHHHHHHhccHHHHHHHHhccccccccccchhhhhCCHHHHHHHHHHHHhcccchhhhhhhhhhhhcCHHHHHHHH
Confidence 32222221111
Q ss_pred -----------------------------------------hcCcEEEc--CcccEEEEEcCCceEEEEECCCeEEEeeE
Q 008860 298 -----------------------------------------LRGIEFHT--EESPQAILKSTDGSLSVKTNKGTVDGFSH 334 (551)
Q Consensus 298 -----------------------------------------~~Gv~i~~--~~~v~~i~~~~~~~~~V~~~~G~~i~~d~ 334 (551)
+.+|+++. +..|++|.. ++ |.+.||+++++|.
T Consensus 301 ~~~~~~~~~~v~dp~~~~~l~P~~~g~kR~~~~~~y~~~l~~~nV~lv~~~~~~I~~it~--~g---v~~~dG~~~~~Dv 375 (540)
T 3gwf_A 301 SFIRAKVAEIIEDPETARKLMPKGLFAKRPLCDSGYYEVYNRPNVEAVAIKENPIREVTA--KG---VVTEDGVLHELDV 375 (540)
T ss_dssp HHHHHHHHHHCCSHHHHHHHCCCSCCCSSCEEESSTGGGGGSTTEEEEETTTSCEEEECS--SE---EEETTCCEEECSE
T ss_pred HHHHHHHHHHcCCHHHHHhCCCCCCCccccCCCccHHHHhcCCCEEEEeCCCCCccEEec--Ce---EEcCCCCEEECCE
Confidence 34778874 568888854 33 8899999999999
Q ss_pred EEEecCcCCCCCCCCccccCeeecCCCCeEeCC--------C--CC-CCCCcEEEe-CcCCCCCCChHHHHHhHHHHHHH
Q 008860 335 VMFATGRRPNTKNLGLEKVGVKMTKNGAIEVDE--------Y--SG-TAVPSIWAV-GDVTDRINLTPVALMEGGALAKT 402 (551)
Q Consensus 335 vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~--------~--~~-t~~~~vya~-GD~~~~~~~~~~A~~~g~~aa~~ 402 (551)
||+|||+.+++.+ +.. +++..++++.+++ + +. .+.||+|++ |..+........+..|++++++.
T Consensus 376 IV~ATGf~~~~~~--~~~--~~i~g~~G~~l~~~w~~~~~~y~g~~v~gfPN~f~~~Gp~~~~~s~~~~~e~q~~~i~~~ 451 (540)
T 3gwf_A 376 LVFATGFDAVDGN--YRR--IEIRGRDGLHINDHWDGQPTSYLGVSTANFPNWFMVLGPNGPFTNLPPSIETQVEWISDT 451 (540)
T ss_dssp EEECCCBSCSSHH--HHT--SEEECGGGCBHHHHTSSSCCCBTTTBCTTCTTEEESSCSSCBCSCHHHHHHHHHHHHHHH
T ss_pred EEECCccCccccC--cCc--ceEECCCCcCHHHhhccChhhccccccCCCCceEEEecCCCCCccHHHHHHHHHHHHHHH
Confidence 9999999998743 222 2332223344442 2 22 278999999 87765334455678899999887
Q ss_pred Hc
Q 008860 403 LF 404 (551)
Q Consensus 403 i~ 404 (551)
|-
T Consensus 452 i~ 453 (540)
T 3gwf_A 452 IG 453 (540)
T ss_dssp HH
T ss_pred HH
Confidence 64
|
| >1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.7e-27 Score=252.64 Aligned_cols=249 Identities=19% Similarity=0.251 Sum_probs=182.4
Q ss_pred CCccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhhccCCCcc
Q 008860 71 YDFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDESNGFGWK 150 (551)
Q Consensus 71 ~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~ 150 (551)
.++||+|||||++|+++|.+|++. ++|+|||+ ...+||.+...... .+++.
T Consensus 107 ~~~dVvIIGgG~aGl~aA~~L~~~-~~V~vie~---------~~~~GG~~~~~~~~-------------------~~g~~ 157 (493)
T 1y56_A 107 VVVDVAIIGGGPAGIGAALELQQY-LTVALIEE---------RGWLGGDMWLKGIK-------------------QEGFN 157 (493)
T ss_dssp EEESCCEECCSHHHHHHHHHHTTT-CCEEEECT---------TSSSSCSGGGTCSE-------------------ETTTT
T ss_pred ccCCEEEECccHHHHHHHHHHHhc-CCEEEEeC---------CCCCCCeeeccccc-------------------cCCCC
Confidence 357999999999999999999999 99999993 44577776531100 01110
Q ss_pred cCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEeE-EEEec--CCEEEE----cCE--EEEeCeEEEcCCCCC
Q 008860 151 YGTEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIEGR-GKIVD--PHTVDV----DGK--LYSARHILISVGGRP 221 (551)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~i~--~~~v~v----~g~--~~~~d~lviAtG~~p 221 (551)
. ...++. ..+.+.+ +.+++++.+. +..++ ...+.+ +++ .+.||++|+|||+.|
T Consensus 158 -----~-~~~~~~-----------~~l~~~l-~~~v~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~d~lvlAtGa~~ 219 (493)
T 1y56_A 158 -----K-DSRKVV-----------EELVGKL-NENTKIYLETSALGVFDKGEYFLVPVVRGDKLIEILAKRVVLATGAID 219 (493)
T ss_dssp -----E-EHHHHH-----------HHHHHTC-CTTEEEETTEEECCCEECSSSEEEEEEETTEEEEEEESCEEECCCEEE
T ss_pred -----C-CHHHHH-----------HHHHHHH-hcCCEEEcCCEEEEEEcCCcEEEEEEecCCeEEEEECCEEEECCCCCc
Confidence 0 111111 1111122 4578776543 22222 222221 343 689999999999999
Q ss_pred CCCCCCCCC--ceecchhhhcC----C-CCCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCCCCCHHHHHHHHH
Q 008860 222 FIPDIPGSE--YAIDSDAALDL----P-SKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRDFVAE 294 (551)
Q Consensus 222 ~~p~i~g~~--~~~~~~~~~~~----~-~~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~ 294 (551)
+.|++||.+ .+++.+++..+ . ..+++++|+|+|++|+| +
T Consensus 220 ~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~vvViGgG~~gle----------------------------------~ 265 (493)
T 1y56_A 220 STMLFENNDMPGVFRRDFALEVMNVWEVAPGRKVAVTGSKADEVI----------------------------------Q 265 (493)
T ss_dssp CCCCCTTTTSTTEEEHHHHHHHHHTSCBCSCSEEEEESTTHHHHH----------------------------------H
T ss_pred cCCCCCCCCCCCEEEcHHHHHHHHhcccCCCCEEEEECCCHHHHH----------------------------------H
Confidence 999999865 35655554421 1 23589999999999988 4
Q ss_pred HHHhcCcEEEcCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCcCCCCCCCCccccCeee--cCCCCeE-eCCCCCC
Q 008860 295 QMSLRGIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNTKNLGLEKVGVKM--TKNGAIE-VDEYSGT 371 (551)
Q Consensus 295 ~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~~~~l~l~~~gl~~--~~~G~i~-vd~~~~t 371 (551)
.+++.||++++++.|+++..+++ ...+.+.+|+++++|.||+|+|.+|+.++ ++..|+++ +++|+|. ||++++
T Consensus 266 ~l~~~GV~v~~~~~v~~i~~~~~-v~~v~~~~g~~i~aD~Vv~a~G~~p~~~l--~~~~g~~~~~~~~g~i~~vd~~~~- 341 (493)
T 1y56_A 266 ELERWGIDYVHIPNVKRVEGNEK-VERVIDMNNHEYKVDALIFADGRRPDINP--ITQAGGKLRFRRGYYSPVLDEYHR- 341 (493)
T ss_dssp HHHHHTCEEEECSSEEEEECSSS-CCEEEETTCCEEECSEEEECCCEEECCHH--HHHTTCCEEEETTEEEECCCTTSE-
T ss_pred HHHhCCcEEEeCCeeEEEecCCc-eEEEEeCCCeEEEeCEEEECCCcCcCchH--HHhcCCCccccCCceeeccccccC-
Confidence 56788999999999999986543 35677888989999999999999999987 56667654 5778887 899999
Q ss_pred CCCcEEEeCcCCCCCCChHHHHHhHHHHHHHHcC
Q 008860 372 AVPSIWAVGDVTDRINLTPVALMEGGALAKTLFQ 405 (551)
Q Consensus 372 ~~~~vya~GD~~~~~~~~~~A~~~g~~aa~~i~g 405 (551)
+.|+|||+|||++. .++..|..||+++|.||.+
T Consensus 342 s~~~vya~GD~~~~-~~~~~A~~~g~~aa~~i~~ 374 (493)
T 1y56_A 342 IKDGIYVAGSAVSI-KPHYANYLEGKLVGAYILK 374 (493)
T ss_dssp EETTEEECSTTTCC-CCHHHHHHHHHHHHHHHHH
T ss_pred cCCCEEEEeccCCc-cCHHHHHHHHHHHHHHHHH
Confidence 99999999999985 5788999999999999986
|
| >3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.1e-25 Score=240.70 Aligned_cols=299 Identities=17% Similarity=0.201 Sum_probs=183.1
Q ss_pred CccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhh-Hhh--hccCCC
Q 008860 72 DFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSH-EFD--ESNGFG 148 (551)
Q Consensus 72 ~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~-~~~--~~~~~g 148 (551)
++||||||||++|+++|..|++.|++|+|||+ ...+||+|. ..|.|............ .+. ....+.
T Consensus 9 ~~dVvIIGaG~aGl~aA~~L~~~g~~v~iiE~---------~~~~GGtw~-~~~yPg~~~d~~~~~y~~~f~~~~~~~~~ 78 (545)
T 3uox_A 9 ALDAVVIGAGVTGIYQAFLINQAGMKVLGIEA---------GEDVGGTWY-WNRYPGCRLDTESYAYGYFALKGIIPEWE 78 (545)
T ss_dssp SEEEEEECCSHHHHHHHHHHHHTTCCEEEECS---------SSSSCTHHH-HCCCTTCBCSSCHHHHCHHHHTTSSTTCC
T ss_pred CCCEEEECccHHHHHHHHHHHhCCCCEEEEeC---------CCCCCCccc-cCCCCceeecCchhhcccccCcccccCCC
Confidence 58999999999999999999999999999993 567899984 33444211000000000 000 001111
Q ss_pred cccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCe--EEEEe-EEEE---ecC-C--EEEE-cCEEEEeCeEEEcCC
Q 008860 149 WKYGTEPQHDWSTLIANKNAELQRLTGIYKNILINAGI--TLIEG-RGKI---VDP-H--TVDV-DGKLYSARHILISVG 218 (551)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~~-~~~~---i~~-~--~v~v-~g~~~~~d~lviAtG 218 (551)
|.. ...+..++..+.. ...++.++ .+..+ ++.. .+. . .+.+ +++++.||+||+|||
T Consensus 79 ~~~---~~~~~~ei~~yl~-----------~~~~~~~l~~~i~~~~~V~~~~~~~~~~~w~V~~~~G~~~~ad~lV~AtG 144 (545)
T 3uox_A 79 WSE---NFASQPEMLRYVN-----------RAADAMDVRKHYRFNTRVTAARYVENDRLWEVTLDNEEVVTCRFLISATG 144 (545)
T ss_dssp CSB---SSCBHHHHHHHHH-----------HHHHHHTCGGGEECSCCEEEEEEEGGGTEEEEEETTTEEEEEEEEEECCC
T ss_pred ccc---cCCCHHHHHHHHH-----------HHHHHcCCcCcEEECCEEEEEEEeCCCCEEEEEECCCCEEEeCEEEECcC
Confidence 211 1122233332222 22222233 22211 2222 222 2 4555 778999999999999
Q ss_pred --CCCCCCCCCCCCc-----eecchhhhc-------CCCCCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCcc-CCC
Q 008860 219 --GRPFIPDIPGSEY-----AIDSDAALD-------LPSKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKV-LRG 283 (551)
Q Consensus 219 --~~p~~p~i~g~~~-----~~~~~~~~~-------~~~~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~-l~~ 283 (551)
++|..|++||.+. +++...... ....+++|+|||+|.+|+|+|..|++.+.+|++++|.+.+ ++.
T Consensus 145 ~~s~p~~p~ipG~~~f~g~~~h~~~~~~~~~~~~~~~~~~~krV~VIG~G~tgve~a~~la~~~~~Vtv~~r~~~~i~p~ 224 (545)
T 3uox_A 145 PLSASRMPDIKGIDSFKGESFHSSRWPTDAEGAPKGVDFTGKRVGVIGTGATGVQIIPIAAETAKELYVFQRTPNWCTPL 224 (545)
T ss_dssp SCBC---CCCTTGGGCCSEEEEGGGCCBCTTSCBSCCCCBTCEEEEECCSHHHHHHHHHHTTTBSEEEEEESSCCCCEEC
T ss_pred CCCCCcCCCCCCccccCCCeEEcccccccccccccccccCCCeEEEECCCccHHHHHHHHHhhCCEEEEEEcCCCccccC
Confidence 8999999999763 334333333 4446899999999999999999999999999999999874 333
Q ss_pred CCH----HHHHHH-------------------------------------------------------------------
Q 008860 284 FDE----DIRDFV------------------------------------------------------------------- 292 (551)
Q Consensus 284 ~~~----~~~~~l------------------------------------------------------------------- 292 (551)
.++ ...+.+
T Consensus 225 ~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~e~r~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (545)
T 3uox_A 225 GNSPMSKEKMDSLRNRYPTILEYVKSTDTAFPYHRDPRKGTDVSESERDAFFEELYRQPGYGIWLSGFRDLLLNKESNKF 304 (545)
T ss_dssp CCCBCCHHHHHHHHHTHHHHHHHHTTSSSSSSCCCBSSCGGGSCHHHHHHHHHHHHHSSSTHHHHTSBTTTTTCHHHHHH
T ss_pred CcCCCCHHHHHHHHhhhHHHHHHHhhcccccccccccchhhhCCHHHHHHHHHHHHhhhhHHHHHhhhhhhhcCHHHHHH
Confidence 222 111111
Q ss_pred ----------------------------------------HHHHHhcCcEEEc--CcccEEEEEcCCceEEEEECCCeEE
Q 008860 293 ----------------------------------------AEQMSLRGIEFHT--EESPQAILKSTDGSLSVKTNKGTVD 330 (551)
Q Consensus 293 ----------------------------------------~~~l~~~Gv~i~~--~~~v~~i~~~~~~~~~V~~~~G~~i 330 (551)
.+.|.+.+|+++. ++.|++|.. ++ |.+.|| ++
T Consensus 305 ~~~~~~~~~~~~v~d~~~~~~l~P~~~~~g~kR~~~~~~y~~al~~~nV~lv~~~~~~I~~it~--~g---v~~~dG-~~ 378 (545)
T 3uox_A 305 LADFVAKKIRQRVKDPVVAEKLIPKDHPFGAKRVPMETNYYETYNRDNVHLVDIREAPIQEVTP--EG---IKTADA-AY 378 (545)
T ss_dssp HHHHHHHHHHHHCSCHHHHHHTSCSSSCTTSSCCCEESSHHHHTTSTTEEEEETTTSCEEEEET--TE---EEESSC-EE
T ss_pred HHHHHHHHHHHHcCCHHHHHhCCCCCCCCCCCccCCCccHHHHhcCCCEEEEecCCCCceEEcc--Ce---EEeCCC-ee
Confidence 1112223777775 668888854 33 788999 89
Q ss_pred EeeEEEEecCcCCCCCCCCccccCeeecCCCCeEeCCC--------C---CCCCCcEEEeCcCCCC---CCChHHHHHhH
Q 008860 331 GFSHVMFATGRRPNTKNLGLEKVGVKMTKNGAIEVDEY--------S---GTAVPSIWAVGDVTDR---INLTPVALMEG 396 (551)
Q Consensus 331 ~~d~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~--------~---~t~~~~vya~GD~~~~---~~~~~~A~~~g 396 (551)
++|.||+|||+.+++.++ . ++++..++++.+++. + -.+.||+|.+.--... ......+..|+
T Consensus 379 ~~D~IV~ATGf~~~~~~~--~--~~~i~g~~G~~l~~~w~~~~~~y~g~~~~gfPN~f~~~gp~~~~~~~s~~~~~e~~~ 454 (545)
T 3uox_A 379 DLDVIIYATGFDAVTGSL--D--RIDIRGKDNVRLIDAWAEGPSTYLGLQARGFPNFFTLVGPHNGSTFCNVGVCGGLQA 454 (545)
T ss_dssp ECSEEEECCCCBSSSCSC--T--TSEEECGGGCBHHHHTTTSCCCBTTTBCTTCTTEEECSSGGGTGGGSCHHHHHHHHH
T ss_pred ecCEEEECCccccccccC--C--CceEECCCCccHHHhhccccceeeccccCCCCcEEEEeCCCCCCccccHHHHHHHHH
Confidence 999999999999987653 2 333433334444422 1 2378999998433221 23445677899
Q ss_pred HHHHHHHc
Q 008860 397 GALAKTLF 404 (551)
Q Consensus 397 ~~aa~~i~ 404 (551)
+++++.|-
T Consensus 455 ~~i~~~i~ 462 (545)
T 3uox_A 455 EWVLRMIS 462 (545)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99988774
|
| >4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=5.1e-25 Score=235.71 Aligned_cols=297 Identities=19% Similarity=0.290 Sum_probs=185.6
Q ss_pred CCccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCeecc---CCC---cchHHHHHhhhhhhHhhhc
Q 008860 71 YDFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVL---RGC---VPKKLLVYASKFSHEFDES 144 (551)
Q Consensus 71 ~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~~~---~g~---~p~~~l~~~~~~~~~~~~~ 144 (551)
.++||+|||||++|+++|..|++.|++|+|||+ ...+||+|.. .|| +|++.+... +...+ .
T Consensus 20 ~~~dVvIIGaG~aGl~aA~~L~~~G~~v~iiE~---------~~~~GGtw~~~~ypg~~~dv~s~~y~~~--f~~~~--~ 86 (549)
T 4ap3_A 20 TSYDVVVVGAGIAGLYAIHRFRSQGLTVRAFEA---------ASGVGGVWYWNRYPGARCDVESIDYSYS--FSPEL--E 86 (549)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHHTTCCEEEECS---------SSSSCTHHHHCCCTTCBCSSCTTTSSCC--SCHHH--H
T ss_pred CCCCEEEECchHHHHHHHHHHHhCCCCEEEEeC---------CCCCCCccccCCCCCceeCCCchhcccc--ccccc--c
Confidence 468999999999999999999999999999993 5678999963 254 443322111 00000 0
Q ss_pred cCCCcccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCe--EEEEe-EEEEe--cCC----EEEE-cCEEEEeCeEE
Q 008860 145 NGFGWKYGTEPQHDWSTLIANKNAELQRLTGIYKNILINAGI--TLIEG-RGKIV--DPH----TVDV-DGKLYSARHIL 214 (551)
Q Consensus 145 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~~-~~~~i--~~~----~v~v-~g~~~~~d~lv 214 (551)
..+.|. ....+..++..+ +....++.++ .+..+ ++..+ +.. .+.+ +++++.||+||
T Consensus 87 ~~~~~~---~~~~~~~ei~~y-----------l~~~~~~~g~~~~i~~~~~V~~i~~~~~~~~w~V~~~~G~~i~ad~lV 152 (549)
T 4ap3_A 87 QEWNWS---EKYATQPEILAY-----------LEHVADRFDLRRDIRFDTRVTSAVLDEEGLRWTVRTDRGDEVSARFLV 152 (549)
T ss_dssp HHCCCS---SSSCBHHHHHHH-----------HHHHHHHTTCGGGEECSCCEEEEEEETTTTEEEEEETTCCEEEEEEEE
T ss_pred cCCCCc---cCCCCHHHHHHH-----------HHHHHHHcCCCccEEECCEEEEEEEcCCCCEEEEEECCCCEEEeCEEE
Confidence 011111 111222232222 2233444454 33322 23322 222 4555 67789999999
Q ss_pred EcCC--CCCCCCCCCCCCc-----eecchhh-hcCCCCCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCcc-CCCCC
Q 008860 215 ISVG--GRPFIPDIPGSEY-----AIDSDAA-LDLPSKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKV-LRGFD 285 (551)
Q Consensus 215 iAtG--~~p~~p~i~g~~~-----~~~~~~~-~~~~~~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~-l~~~~ 285 (551)
+||| ++|..|++||.+. +++.... ......+++|+|||+|.+|+|+|..|++.+.+|++++|.+.+ ++..+
T Consensus 153 ~AtG~~s~p~~p~ipG~~~f~g~~~~~~~~~~~~~~~~~krV~VIG~G~sgve~a~~l~~~~~~Vtv~~r~~~~ilp~~~ 232 (549)
T 4ap3_A 153 VAAGPLSNANTPAFDGLDRFTGDIVHTARWPHDGVDFTGKRVGVIGTGSSGIQSIPIIAEQAEQLFVFQRSANYSIPAGN 232 (549)
T ss_dssp ECCCSEEECCCCCCTTGGGCCSEEEEGGGCCTTCCCCBTCEEEEECCSHHHHHHHHHHHHHBSEEEEEESSCCCEEECC-
T ss_pred ECcCCCCCCCCCCCCCcccCCCceEEeccccccccccCCCEEEEECCCchHHHHHHHHHhhCCEEEEEECCCCccccCcC
Confidence 9999 8999999999763 2332222 123345899999999999999999999999999999999874 33333
Q ss_pred HHHHHHHHHH----------------------------------------------------------------------
Q 008860 286 EDIRDFVAEQ---------------------------------------------------------------------- 295 (551)
Q Consensus 286 ~~~~~~l~~~---------------------------------------------------------------------- 295 (551)
+++...+.+.
T Consensus 233 ~~~~~~~~~~l~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~e~r~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (549)
T 4ap3_A 233 VPLDDATRAEQKANYAERRRLSRESGGGSPHRPHPKSALEVSEEERRAVYEERWKLGGVLFSKAFPDQLTDPAANDTARA 312 (549)
T ss_dssp ---CHHHHHHHHHTHHHHHHHHHHSSSSSSCCCCSSCTTSSCHHHHHHHHHHHHHHCHHHHTTSSTTTTTCHHHHHHHHH
T ss_pred CCCCHHHHHHHHhccHHHHHHHHhhccccccccCccchhcCCHHHHHHHHHHHHhhcchHHHhhhhhhhcCHHHHHHHHH
Confidence 3222111111
Q ss_pred ----------------------------------------HHhcCcEEE--cCcccEEEEEcCCceEEEEECCCeEEEee
Q 008860 296 ----------------------------------------MSLRGIEFH--TEESPQAILKSTDGSLSVKTNKGTVDGFS 333 (551)
Q Consensus 296 ----------------------------------------l~~~Gv~i~--~~~~v~~i~~~~~~~~~V~~~~G~~i~~d 333 (551)
+.+.+|+++ ....|++|.. ++ |.+.|| ++++|
T Consensus 313 ~~~~~~~~~v~d~~~~~~l~P~~~~~~~kR~~~~~~y~~al~~~~V~lvd~~~~~I~~it~--~g---v~~~dG-~~~~D 386 (549)
T 4ap3_A 313 FWEEKIRAVVDDPAVAELLTPKDHAIGAKRIVLDSGYYETYNRDNVELVDLRSTPIVGMDE--TG---IVTTGA-HYDLD 386 (549)
T ss_dssp HHHHHHHHHCSCHHHHHHHSCSSCCBTTBCCEEESSTGGGGGSTTEEEEETTTSCEEEEET--TE---EEESSC-EEECS
T ss_pred HHHHHHHHHcCCHHHHHhCCCCCCCCCccccCCCccHHHHhcCCCEEEEeCCCCCceEEeC--Cc---EEeCCC-ceecC
Confidence 112377777 2457888864 33 788999 89999
Q ss_pred EEEEecCcCCCCCCCCccccCeeecCCCCeEeCCC--------CC---CCCCcEEEe-CcCCC--CCCChHHHHHhHHHH
Q 008860 334 HVMFATGRRPNTKNLGLEKVGVKMTKNGAIEVDEY--------SG---TAVPSIWAV-GDVTD--RINLTPVALMEGGAL 399 (551)
Q Consensus 334 ~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~--------~~---t~~~~vya~-GD~~~--~~~~~~~A~~~g~~a 399 (551)
.||+|||+.+++.+ +.. +.+..++++.+++. +- .+.||+|.+ |-.+. .......+..|++++
T Consensus 387 ~iI~ATGf~~~~~~--~~~--~~i~g~~G~~l~~~w~~~~~~y~g~~~~gfPN~f~~~Gp~~~~~~~s~~~~~e~~~~~i 462 (549)
T 4ap3_A 387 MIVLATGFDAMTGS--LDK--LEIVGRGGRTLKETWAAGPRTYLGLGIDGFPNFFNLTGPGSPSVLANMVLHSELHVDWV 462 (549)
T ss_dssp EEEECCCEEESSTT--GGG--SEEECGGGCBHHHHTTTSCCCBTTTBCTTCTTEEETTCTTSCGGGSCHHHHHHHHHHHH
T ss_pred EEEECCcccccccc--cCc--eeEECCCCcCHHHhhccchhhccccccCCCCcEEEEeCCCCCCcCccHHHHHHHHHHHH
Confidence 99999999998754 222 33333344555532 21 278999997 33222 123345677889988
Q ss_pred HHHHc
Q 008860 400 AKTLF 404 (551)
Q Consensus 400 a~~i~ 404 (551)
++.|-
T Consensus 463 ~~~i~ 467 (549)
T 4ap3_A 463 ADAIA 467 (549)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88764
|
| >1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=2.1e-24 Score=231.67 Aligned_cols=301 Identities=17% Similarity=0.244 Sum_probs=182.6
Q ss_pred CCccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhH---hhhccCC
Q 008860 71 YDFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHE---FDESNGF 147 (551)
Q Consensus 71 ~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~---~~~~~~~ 147 (551)
.++||+|||||++|+++|..|++.|++|+|||+ ...+||+|.. .|.|...+......... ......+
T Consensus 15 ~~~dVvIIGaG~aGl~aA~~L~~~G~~v~iiE~---------~~~~GG~w~~-~~~pg~~~d~~~~~~~~~f~~~~~~~~ 84 (542)
T 1w4x_A 15 EEVDVLVVGAGFSGLYALYRLRELGRSVHVIET---------AGDVGGVWYW-NRYPGARCDIESIEYCYSFSEEVLQEW 84 (542)
T ss_dssp SEEEEEEECCSHHHHHHHHHHHHTTCCEEEECS---------SSSSCTHHHH-CCCTTCBCSSCTTTSSCCSCHHHHHHC
T ss_pred CCCCEEEECccHHHHHHHHHHHhCCCCEEEEeC---------CCCCCCcccc-cCCCceeecccccccccccChhhhhcc
Confidence 368999999999999999999999999999993 5678999852 34443111000000000 0000001
Q ss_pred CcccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhCC--eEEEEe-EEE---EecC---CEEEE-cCEEEEeCeEEEcC
Q 008860 148 GWKYGTEPQHDWSTLIANKNAELQRLTGIYKNILINAG--ITLIEG-RGK---IVDP---HTVDV-DGKLYSARHILISV 217 (551)
Q Consensus 148 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--v~~~~~-~~~---~i~~---~~v~v-~g~~~~~d~lviAt 217 (551)
.|. ....+..++..+.. ...++.+ ..+..+ ++. ..+. ..+.+ +++++.+|+||+||
T Consensus 85 ~~~---~~~~~~~~i~~yl~-----------~~~~~~~l~~~i~~~~~V~~~~~~~~~~~w~V~~~~G~~~~ad~vV~At 150 (542)
T 1w4x_A 85 NWT---ERYASQPEILRYIN-----------FVADKFDLRSGITFHTTVTAAAFDEATNTWTVDTNHGDRIRARYLIMAS 150 (542)
T ss_dssp CCC---BSSCBHHHHHHHHH-----------HHHHHTTGGGGEECSCCEEEEEEETTTTEEEEEETTCCEEEEEEEEECC
T ss_pred Ccc---cccCCHHHHHHHHH-----------HHHHHcCCCceEEcCcEEEEEEEcCCCCeEEEEECCCCEEEeCEEEECc
Confidence 111 01112222222222 1222222 222222 222 2222 24444 66789999999999
Q ss_pred C--CCCCCCCCCCCCc-----eecchhhhc-CCCCCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCcc-CCCC----
Q 008860 218 G--GRPFIPDIPGSEY-----AIDSDAALD-LPSKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKV-LRGF---- 284 (551)
Q Consensus 218 G--~~p~~p~i~g~~~-----~~~~~~~~~-~~~~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~-l~~~---- 284 (551)
| +.|..|++||.+. +++.....+ ....+++|+|||+|.+|+|++..+++.+.+|+++.|.+.+ ++..
T Consensus 151 G~~s~p~~p~i~G~~~f~G~~~hs~~~~~~~~~~~gk~V~VIG~G~sg~e~a~~l~~~~~~vtv~~r~~~~~~p~~~~~~ 230 (542)
T 1w4x_A 151 GQLSVPQLPNFPGLKDFAGNLYHTGNWPHEPVDFSGQRVGVIGTGSSGIQVSPQIAKQAAELFVFQRTPHFAVPARNAPL 230 (542)
T ss_dssp CSCCCCCCCCCTTGGGCCSEEEEGGGCCSSCCCCBTCEEEEECCSHHHHHHHHHHHHHBSEEEEEESSCCCEEECCCCBC
T ss_pred CCCCCCCCCCCCCcccCCCceEECCCCCCchhccCCCEEEEECCCccHHHHHHHHhhcCceEEEEEcCCcccccCCCCCC
Confidence 9 6789999999752 333322212 3345899999999999999999999999999999998765 2321
Q ss_pred CHHHHHH-----------------------------------------------------------------------HH
Q 008860 285 DEDIRDF-----------------------------------------------------------------------VA 293 (551)
Q Consensus 285 ~~~~~~~-----------------------------------------------------------------------l~ 293 (551)
.++..+. +.
T Consensus 231 ~~~~~~~~~~~~p~l~~~~~~~~~G~~~~~d~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (542)
T 1w4x_A 231 DPEFLADLKKRYAEFREESRNTPGGTHRYQGPKSALEVSDEELVETLERYWQEGGPDILAAYRDILRDRDANERVAEFIR 310 (542)
T ss_dssp CHHHHHHHHTTHHHHHHHHHTSSSSSCCCCCCSCTTTSCHHHHHHHHHHHHHHCSGGGGGSSTTTTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHhhCHHHHHHHHhhccccccCccccchhcCCHHHHHHHHHHHHhhcchHHHHHHHHHhcChHHHHHHHHHHH
Confidence 1111100 00
Q ss_pred HH-----------------------------------HHhcCcEEE--cCcccEEEEEcCCceEEEEECCCeEEEeeEEE
Q 008860 294 EQ-----------------------------------MSLRGIEFH--TEESPQAILKSTDGSLSVKTNKGTVDGFSHVM 336 (551)
Q Consensus 294 ~~-----------------------------------l~~~Gv~i~--~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi 336 (551)
+. +.+.+|+++ .++.|+++.. ++ |.+.| +++++|.||
T Consensus 311 ~~~~~~~~~~~~~~~l~P~~~~~~~kr~~~~~~y~~~~~~~~v~lv~~~~~~i~~i~~--~g---v~~~d-~~~~~D~ii 384 (542)
T 1w4x_A 311 NKIRNTVRDPEVAERLVPKGYPFGTKRLILEIDYYEMFNRDNVHLVDTLSAPIETITP--RG---VRTSE-REYELDSLV 384 (542)
T ss_dssp HHHHHHCSSHHHHHHHSCCSSCSSSSCCEEESSHHHHTTSTTEEEEETTTSCEEEECS--SE---EEESS-CEEECSEEE
T ss_pred HHHHHHcCCHHHHHhcCCCCCCccccCCCCCccHHHHhCCCCEEEEecCCCCceEEcC--Ce---EEeCC-eEEecCEEE
Confidence 11 111346665 3557777742 33 78888 889999999
Q ss_pred EecCcCCCCCCCCccccCeeecCCCCeEeCC--------C--CC-CCCCcEEEe-CcCCC--CCCChHHHHHhHHHHHHH
Q 008860 337 FATGRRPNTKNLGLEKVGVKMTKNGAIEVDE--------Y--SG-TAVPSIWAV-GDVTD--RINLTPVALMEGGALAKT 402 (551)
Q Consensus 337 ~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~--------~--~~-t~~~~vya~-GD~~~--~~~~~~~A~~~g~~aa~~ 402 (551)
+|||+.+++.+ +...++. ..+| +.+++ + +. ...||+|++ |+.+. .......|..|+++++++
T Consensus 385 ~atG~~~~~~~--~~~~~i~-g~~G-~~l~~~w~~~~~~y~~~~v~~~Pn~f~~~G~~~~~~~~~~~~~~e~q~~~ia~~ 460 (542)
T 1w4x_A 385 LATGFDALTGA--LFKIDIR-GVGN-VALKEKWAAGPRTYLGLSTAGFPNLFFIAGPGSPSALSNMLVSIEQHVEWVTDH 460 (542)
T ss_dssp ECCCCCCTTHH--HHTSEEE-CGGG-CBHHHHTTTSCCCBTTTBCTTSTTEEESSCTTSSGGGSCHHHHHHHHHHHHHHH
T ss_pred EcCCccccccC--cCceeeE-CCCC-CCHHHhhcCchheecccccCCCCceEEEcCCCCCcccccHHHHHHHHHHHHHHH
Confidence 99999998765 3332222 2333 44443 2 22 278999998 99864 234457899999999999
Q ss_pred HcC
Q 008860 403 LFQ 405 (551)
Q Consensus 403 i~g 405 (551)
|..
T Consensus 461 i~~ 463 (542)
T 1w4x_A 461 IAY 463 (542)
T ss_dssp HHH
T ss_pred HHH
Confidence 863
|
| >2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=3.9e-23 Score=189.02 Aligned_cols=151 Identities=19% Similarity=0.301 Sum_probs=134.6
Q ss_pred eEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCC---------CC-----CHHHHHHHHHHHHhcCcEEEcCcccEEE
Q 008860 247 KIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLR---------GF-----DEDIRDFVAEQMSLRGIEFHTEESPQAI 312 (551)
Q Consensus 247 ~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~---------~~-----~~~~~~~l~~~l~~~Gv~i~~~~~v~~i 312 (551)
+++|||+|++|+++|..|++.|.+|+++++.+.++. .+ ++++.+.+.+.+++.|++++.+ +|+++
T Consensus 3 ~vvIIGgG~~Gl~~A~~l~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~v~~~-~v~~i 81 (180)
T 2ywl_A 3 DVIVVGGGPSGLSAALFLARAGLKVLVLDGGRSKVKGVSRVPNYPGLLDEPSGEELLRRLEAHARRYGAEVRPG-VVKGV 81 (180)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEEECSCCTTTTCSCCCCSTTCTTCCCHHHHHHHHHHHHHHTTCEEEEC-CCCEE
T ss_pred eEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCcccCchhhhccCCCcCCCCHHHHHHHHHHHHHHcCCEEEeC-EEEEE
Confidence 689999999999999999999999999999876552 23 4788899999999999999999 99999
Q ss_pred EEcCCceEEEEECCCeEEEeeEEEEecCcCCCCCCCCccccCeeecCCCCeEeCCCCCCCCCcEEEeCcCCCCCC-ChHH
Q 008860 313 LKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNTKNLGLEKVGVKMTKNGAIEVDEYSGTAVPSIWAVGDVTDRIN-LTPV 391 (551)
Q Consensus 313 ~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~t~~~~vya~GD~~~~~~-~~~~ 391 (551)
+.++++ +.+.+.+| ++++|.||+|+|..|+. ++..+++++ +|.|.||+++||+.|+|||+|||+..+. ++..
T Consensus 82 ~~~~~~-~~v~~~~g-~i~ad~vI~A~G~~~~~----~~~~g~~~~-~g~i~vd~~~~t~~~~i~a~GD~~~~~~~~~~~ 154 (180)
T 2ywl_A 82 RDMGGV-FEVETEEG-VEKAERLLLCTHKDPTL----PSLLGLTRR-GAYIDTDEGGRTSYPRVYAAGVARGKVPGHAII 154 (180)
T ss_dssp EECSSS-EEEECSSC-EEEEEEEEECCTTCCHH----HHHHTCCEE-TTEECCCTTCBCSSTTEEECGGGGTCCSCCHHH
T ss_pred EEcCCE-EEEEECCC-EEEECEEEECCCCCCCc----cccCCCCcc-CceEEeCCCCCcCCCCEEEeecccCcchhhHHH
Confidence 987666 77888888 79999999999999853 456678888 8999999999999999999999999865 8999
Q ss_pred HHHhHHHHHHHHcC
Q 008860 392 ALMEGGALAKTLFQ 405 (551)
Q Consensus 392 A~~~g~~aa~~i~g 405 (551)
|..||+++|.||.+
T Consensus 155 A~~~g~~aa~~i~~ 168 (180)
T 2ywl_A 155 SAGDGAYVAVHLVS 168 (180)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHH
Confidence 99999999999985
|
| >2e5v_A L-aspartate oxidase; archaea, oxidoreductase; HET: FAD; 2.09A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.81 E-value=6.2e-21 Score=200.82 Aligned_cols=308 Identities=15% Similarity=0.214 Sum_probs=175.5
Q ss_pred cEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCe--eccCCCcchHHHHHhh----------------
Q 008860 74 DLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGT--CVLRGCVPKKLLVYAS---------------- 135 (551)
Q Consensus 74 dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~--~~~~g~~p~~~l~~~~---------------- 135 (551)
||+|||||+||+++|+.|++.|.+|+||||. ..........||. +.+.+|.|.+.+....
T Consensus 1 DVvVIG~G~AGl~aA~~la~~G~~V~viek~--~~~g~s~~a~Ggi~~~~~~~d~~~~~~~d~l~~g~~~~d~~~v~~~~ 78 (472)
T 2e5v_A 1 MIYIIGSGIAGLSAGVALRRAGKKVTLISKR--IDGGSTPIAKGGVAASVGSDDSPELHAQDTIRVGDGLCDVKTVNYVT 78 (472)
T ss_dssp CEEEECCSHHHHHHHHHHHHTTCCEEEECSS--TTCSSGGGCCSCEECCCSTTCCHHHHHHHHHHHHTTCSCHHHHHHHH
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEeCC--CCCchHHHHhCCeEEeCCCCCCHHHHHHHHHHhcCCcCCHHHHHHHH
Confidence 7999999999999999999999999999953 1111111123333 2344566655433220
Q ss_pred -hhhhHhhhccCCCcccCCC----CCCChHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEeE-EEEe--cCCEE---EE-
Q 008860 136 -KFSHEFDESNGFGWKYGTE----PQHDWSTLIANKNAELQRLTGIYKNILINAGITLIEGR-GKIV--DPHTV---DV- 203 (551)
Q Consensus 136 -~~~~~~~~~~~~g~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~i--~~~~v---~v- 203 (551)
+....+..+..+|+.+... ....+..........-..+...+.+.+++.+++++.+. + .+ +...+ .+
T Consensus 79 ~~~~~~i~~l~~~Gv~~~~~~~~~~g~~~~r~~~~~d~~g~~l~~~L~~~~~~~gv~i~~~~~v-~l~~~~~~v~Gv~v~ 157 (472)
T 2e5v_A 79 SEAKNVIETFESWGFEFEEDLRLEGGHTKRRVLHRTDETGREIFNFLLKLAREEGIPIIEDRLV-EIRVKDGKVTGFVTE 157 (472)
T ss_dssp HHHHHHHHHHHHTTCCCCSSCBCCTTCSSCCEECSSSCHHHHHHHHHHHHHHHTTCCEECCCEE-EEEEETTEEEEEEET
T ss_pred HHHHHHHHHHHHcCCCCCcccccccCcCcCcEEEeCCCCHHHHHHHHHHHHHhCCCEEEECcEE-EEEEeCCEEEEEEEE
Confidence 1122233344445443210 00000000000000011222223334456789988774 5 43 34443 33
Q ss_pred -cCEEEEeCeEEEcCCCCCCCCCCCCCCceecchh----------hhcCCCC--CCeEEEEcCcHHHHHHHHHHHhCCCe
Q 008860 204 -DGKLYSARHILISVGGRPFIPDIPGSEYAIDSDA----------ALDLPSK--PEKIAIVGGGYIALEFAGIFSGLTSE 270 (551)
Q Consensus 204 -~g~~~~~d~lviAtG~~p~~p~i~g~~~~~~~~~----------~~~~~~~--~~~vvViG~G~~g~e~a~~l~~~g~~ 270 (551)
++..+.+|.||+|||+.+..++++......+.+. +.+++.. ...++++|+| +++++..++..|..
T Consensus 158 ~~~g~~~a~~VVlAtGg~~~~~~~~~~~~~~tGdgi~~a~~aGa~~~d~e~~q~~p~~~~~ggg--~~~~ae~~~~~G~~ 235 (472)
T 2e5v_A 158 KRGLVEDVDKLVLATGGYSYLYEYSSTQSTNIGDGMAIAFKAGTILADMEFVQFHPTVTSLDGE--VFLLTETLRGEGAQ 235 (472)
T ss_dssp TTEEECCCSEEEECCCCCGGGSSSBSSCTTCSCHHHHHHHHTTCCEECTTCEEEEEEEECGGGC--CEECCTHHHHTTCE
T ss_pred eCCCeEEeeeEEECCCCCcccCccccCCCCCchHHHHHHHHcCCCEeCCcceEEEeEEEccCCC--ceeeehhhcCCceE
Confidence 2345789999999998887665432211222222 1112211 1234455766 88888899999988
Q ss_pred EEEEeecCccCCCCCHHH--------HHHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEECCCeEEE-eeEEEEecCc
Q 008860 271 VHVFIRQKKVLRGFDEDI--------RDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTNKGTVDG-FSHVMFATGR 341 (551)
Q Consensus 271 Vtlv~~~~~~l~~~~~~~--------~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~G~~i~-~d~vi~a~G~ 341 (551)
+ +..+.+++++.++++. ...+.+.+++.|. ++++... + + . + .+.++ .+.++++.|.
T Consensus 236 ~-v~~~g~rf~~~~~~~~el~~rd~v~~~i~~~~~~~~~-v~ld~~~--~---~-~-----~--~~~~~~~~~~~~~~G~ 300 (472)
T 2e5v_A 236 I-INENGERFLFNYDKRGELAPRDILSRAIYIEMLKGHK-VFIDLSK--I---E-D-----F--ERKFPVVAKYLARHGH 300 (472)
T ss_dssp E-EETTCCCGGGGTCTTGGGSCHHHHHHHHHHHHHHTCC-EEEECTT--C---T-T-----H--HHHCHHHHHHHHHTTC
T ss_pred E-ECCCCCCCCccCCcccCcCchhHHHHHHHHHHHhCCc-EEEeccc--h---H-H-----H--HHHhHHHHHHHHHhCc
Confidence 7 7788888887665543 5666677766653 3333211 0 0 0 0 01233 4677888999
Q ss_pred CCCCCCCCccccCeeecCCCCeEeCCCCCCCCCcEEEeCcCCC-CC----CChHHHHHhHHHHHHHHc
Q 008860 342 RPNTKNLGLEKVGVKMTKNGAIEVDEYSGTAVPSIWAVGDVTD-RI----NLTPVALMEGGALAKTLF 404 (551)
Q Consensus 342 ~p~~~~l~l~~~gl~~~~~G~i~vd~~~~t~~~~vya~GD~~~-~~----~~~~~A~~~g~~aa~~i~ 404 (551)
.|+ +++.... ......|+|.||+++||++|||||+|||++ .. .++..+..++.+.++++.
T Consensus 301 dp~-~~i~v~p--~~~~~~GGI~vd~~~~t~ipgLyAaGd~a~~~~hg~~rl~~~sl~~~~v~G~~a~ 365 (472)
T 2e5v_A 301 NYK-VKIPIFP--AAHFVDGGIRVNIRGESNIVNLYAIGEVSDSGLHGANRLASNSLLEGLVFGINLP 365 (472)
T ss_dssp CTT-SCEECEE--EEEEESCEEECCTTCBCSSBTEEECGGGEECSSSTTSCCTTHHHHHHHHHHHHGG
T ss_pred Ccc-cceEeeh--hhceeCCCeEECCCCccccCCEEecchhcccccCCCCCCCcccHHHHHHHHHHHH
Confidence 999 6643222 223346899999999999999999999988 32 566777777655555543
|
| >4b63_A L-ornithine N5 monooxygenase; oxidoreductase, siderophore, flavin; HET: FAD NAP; 1.90A {Aspergillus fumigatus} PDB: 4b64_A* 4b65_A* 4b66_A* 4b67_A* 4b68_A* 4b69_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=9.7e-17 Score=170.09 Aligned_cols=199 Identities=18% Similarity=0.200 Sum_probs=122.9
Q ss_pred EEEEeCeEEEcCCCCCCCCCCCCC-Cceecchhhhc-------CCCCCCeEEEEcCcHHHHHHHHHHHhC--CCeEEEEe
Q 008860 206 KLYSARHILISVGGRPFIPDIPGS-EYAIDSDAALD-------LPSKPEKIAIVGGGYIALEFAGIFSGL--TSEVHVFI 275 (551)
Q Consensus 206 ~~~~~d~lviAtG~~p~~p~i~g~-~~~~~~~~~~~-------~~~~~~~vvViG~G~~g~e~a~~l~~~--g~~Vtlv~ 275 (551)
+++.++.||+|||..|.+|..++. ..++++.+... ....+|+|+|||+|.+|+|++..|.+. +.+|+++.
T Consensus 199 ~~~~ar~vVlatG~~P~iP~~~~~~g~v~Hss~y~~~~~~~~~~~~~gKrV~VVG~G~SA~ei~~~L~~~~~~~~v~~~~ 278 (501)
T 4b63_A 199 SARRTRKVVIAIGGTAKMPSGLPQDPRIIHSSKYCTTLPALLKDKSKPYNIAVLGSGQSAAEIFHDLQKRYPNSRTTLIM 278 (501)
T ss_dssp EEEEEEEEEECCCCEECCCTTSCCCTTEEEGGGHHHHHHHHSCCTTSCCEEEEECCSHHHHHHHHHHHHHSTTCEEEEEC
T ss_pred EEEEeCEEEECcCCCCCCCCCCCCCcceeeccccccchhhccccccCCcEEEEECCcHHHHHHHHHHHhcCCCceEEEEe
Confidence 478999999999999888875443 34554444332 223589999999999999999999764 78999999
Q ss_pred ecCccCCC---------CCHHHHHH-------------------------------HHHHH-H---------hcCcEEEc
Q 008860 276 RQKKVLRG---------FDEDIRDF-------------------------------VAEQM-S---------LRGIEFHT 305 (551)
Q Consensus 276 ~~~~~l~~---------~~~~~~~~-------------------------------l~~~l-~---------~~Gv~i~~ 305 (551)
|++.+.+. +.++..+. +.+.+ + .....+..
T Consensus 279 R~~~~~p~~~s~~~~~~f~p~~~~~f~~l~~~~r~~~~~~~~~~~~~~v~~~li~~i~~~~y~~~~~~~~~~~~~~~l~~ 358 (501)
T 4b63_A 279 RDSAMRPSDDSPFVNEIFNPERVDKFYSQSAAERQRSLLADKATNYSVVRLELIEEIYNDMYLQRVKNPDETQWQHRILP 358 (501)
T ss_dssp SSSSCCBCCCCTTGGGGGSTTHHHHHHTSCHHHHHHHHHHTGGGTSSCBCHHHHHHHHHHHHHHHHHCSCGGGCSSEEEC
T ss_pred CCCccccccccccchhhcCHHHHHHHHhCCHHHHHHHHHHHHhhhhcccCHHHHHHHHHHHHhhccCCCcccccceeecC
Confidence 98765432 11111111 00000 0 01224555
Q ss_pred CcccEEEEEcCC-ceEE------------EEECCCeEEEeeEEEEecCcCCCCC--CCCccccCeeecCCCCeEeCCCCC
Q 008860 306 EESPQAILKSTD-GSLS------------VKTNKGTVDGFSHVMFATGRRPNTK--NLGLEKVGVKMTKNGAIEVDEYSG 370 (551)
Q Consensus 306 ~~~v~~i~~~~~-~~~~------------V~~~~G~~i~~d~vi~a~G~~p~~~--~l~l~~~gl~~~~~G~i~vd~~~~ 370 (551)
+..+..+..... +.+. +.+.+|+++++|.||+|||++++.. ++.. ...+..+.+|...|+.+.+
T Consensus 359 ~~~v~~~~~~~~~~~~~v~~~~~~~~~~~v~~~dg~~~~~D~VI~ATGy~~~~p~~L~~~-~~~l~~d~~g~~~v~rdy~ 437 (501)
T 4b63_A 359 ERKITRVEHHGPQSRMRIHLKSSKPESEGAANDVKETLEVDALMVATGYNRNAHERLLSK-VQHLRPTGQDQWKPHRDYR 437 (501)
T ss_dssp SEEEEEEECCSSSSCEEEEEEESCC--------CCCEEEESEEEECCCEECCTHHHHTGG-GGGGSSTTCCSCCBCTTSB
T ss_pred CcceeeeeecCCCCeEEEEeeeeEEeCCeeEeCCCeEEECCEEEECcCCCCCCcchhcch-hhhcCcCcCCCeeeCCCcE
Confidence 555555543322 1122 3456788999999999999998753 2211 1235556777888887654
Q ss_pred C--------CCCcEEEeCcCCC-----CCCChHHHHHhHHHHHHHHcCC
Q 008860 371 T--------AVPSIWAVGDVTD-----RINLTPVALMEGGALAKTLFQA 406 (551)
Q Consensus 371 t--------~~~~vya~GD~~~-----~~~~~~~A~~~g~~aa~~i~g~ 406 (551)
. ..++||+.|-+-. .+.+...|.+.|+++ +.|+|.
T Consensus 438 ~~~~~~~~~~~~~i~~qg~~~~thG~~~~~Ls~~a~R~~~I~-~~l~g~ 485 (501)
T 4b63_A 438 VEMDPSKVSSEAGIWLQGCNERTHGLSDSLLSVLAVRGGEMV-QSIFGE 485 (501)
T ss_dssp BCCCTTTBCTTCEEEECSCCHHHHCTTTTSSTTHHHHHHHHH-HHHHHH
T ss_pred EeecCCccCCCceEEecCCCcccCCcchhhHHHHHHHHHHHH-HHHhcc
Confidence 2 2467999985432 144555788888765 445553
|
| >2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1 | Back alignment and structure |
|---|
Probab=99.67 E-value=3.7e-17 Score=168.24 Aligned_cols=197 Identities=18% Similarity=0.256 Sum_probs=110.2
Q ss_pred CCCccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCC--------CCee--ccCCCcchHHHHHhhhh--
Q 008860 70 HYDFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGV--------GGTC--VLRGCVPKKLLVYASKF-- 137 (551)
Q Consensus 70 ~~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~--------GG~~--~~~g~~p~~~l~~~~~~-- 137 (551)
+.++||+|||||++|+++|+.|++.|.+|+|||+ ...+ ||.| .+.+|.|.+.+....++
T Consensus 2 M~~~dViIIGgG~aGl~aA~~la~~G~~V~vlEk---------~~~~g~~~~~sggg~cn~~~~~~~~~~~~~~~~~~~~ 72 (401)
T 2gqf_A 2 SQYSENIIIGAGAAGLFCAAQLAKLGKSVTVFDN---------GKKIGRKILMSGGGFCNFTNLEVTPAHYLSQNPHFVK 72 (401)
T ss_dssp EEECSEEEECCSHHHHHHHHHHHHTTCCEEEECS---------SSSSCHHHHHGGGGTCCCEESSCCGGGEECSCTTSTH
T ss_pred CCCCCEEEECCcHHHHHHHHHHHhCCCCEEEEeC---------CCCCchhcEEcCCCeEEccCCccCHHHhccCCHHHHH
Confidence 3468999999999999999999999999999993 2222 5566 55666654322100000
Q ss_pred --------hhHhhhccCCCcccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEeE-EEEe--c----CCE--
Q 008860 138 --------SHEFDESNGFGWKYGTEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIEGR-GKIV--D----PHT-- 200 (551)
Q Consensus 138 --------~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~i--~----~~~-- 200 (551)
...+..+..+|+.+... ++..++... ....+...+.+.+++.|++++.+. +..+ + ...
T Consensus 73 ~~l~~~~~~~~~~~~~~~Gi~~~~~---~~g~~~p~~--~~~~l~~~L~~~~~~~Gv~i~~~~~v~~i~~~~~g~~~~~~ 147 (401)
T 2gqf_A 73 SALARYTNWDFISLVAEQGITYHEK---ELGQLFCDE--GAEQIVEMLKSECDKYGAKILLRSEVSQVERIQNDEKVRFV 147 (401)
T ss_dssp HHHHHSCHHHHHHHHHHTTCCEEEC---STTEEEETT--CTHHHHHHHHHHHHHHTCEEECSCCEEEEEECCSCSSCCEE
T ss_pred HHHHhCCHHHHHHHHHhCCCceEEC---cCCEEccCC--CHHHHHHHHHHHHHHCCCEEEeCCEEEEEEcccCcCCCeEE
Confidence 01111122233321100 000000000 011122233444556689988764 3333 3 233
Q ss_pred EEEcCEEEEeCeEEEcCCCCCC--------------------CCCCCCCCcee-cchh-h---hcCCCCCCeEEEEc---
Q 008860 201 VDVDGKLYSARHILISVGGRPF--------------------IPDIPGSEYAI-DSDA-A---LDLPSKPEKIAIVG--- 252 (551)
Q Consensus 201 v~v~g~~~~~d~lviAtG~~p~--------------------~p~i~g~~~~~-~~~~-~---~~~~~~~~~vvViG--- 252 (551)
+..++..+.+|+||+|||+.+. .|..|+...+. +.++ + +.....+.++.|+|
T Consensus 148 v~~~~g~i~ad~VVlAtG~~s~p~~g~~G~g~~la~~~G~~i~~~~p~l~~~~~~~~~~~~~~l~g~~~~~~~~i~G~~~ 227 (401)
T 2gqf_A 148 LQVNSTQWQCKNLIVATGGLSMPGLGATPFGYQIAEQFGIPVIPPRASLVPFTYRETDKFLTALSGISLPVTITALCGKS 227 (401)
T ss_dssp EEETTEEEEESEEEECCCCSSCGGGTCCSHHHHHHHHTTCCEEEEEEESCCEECCGGGGGGGGGTTCEEEEEEEETTSCE
T ss_pred EEECCCEEECCEEEECCCCccCCCCCCChHHHHHHHHCCCCcccCcceeeceecCCchhhcccCCCeeeeeEEEEcCCce
Confidence 3334558999999999998772 23344443222 2332 3 23333355666668
Q ss_pred ------------CcHHHHHHHHHHHhCCCeEEEEeecCccCCCCCH
Q 008860 253 ------------GGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDE 286 (551)
Q Consensus 253 ------------~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~~~~~ 286 (551)
+|+++++++..+++ |.+|++ .++|.++.
T Consensus 228 ~~g~~l~t~~g~sG~~~l~~s~~~~~-~~~~~i-----~~~p~~~~ 267 (401)
T 2gqf_A 228 FYNQLLFTHRGISGPAVLQISNYWQP-TESVEI-----DLLPNHNV 267 (401)
T ss_dssp EEEEEEECSSEEESHHHHHHTTTCCT-TCCEEE-----ESCSSSCH
T ss_pred EEeCEEEECCCccHHHHHHHHHHHhc-CCEEEE-----ECCCCCCH
Confidence 89999999998876 777775 35666553
|
| >2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7 | Back alignment and structure |
|---|
Probab=99.62 E-value=1.1e-15 Score=145.19 Aligned_cols=158 Identities=17% Similarity=0.198 Sum_probs=115.1
Q ss_pred CeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCc-----------------cCCCC-------CHHHHHHHHHHHHhc-C
Q 008860 246 EKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKK-----------------VLRGF-------DEDIRDFVAEQMSLR-G 300 (551)
Q Consensus 246 ~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~-----------------~l~~~-------~~~~~~~l~~~l~~~-G 300 (551)
.+|+|||+|+.|+++|..|++.|.+|+++++... ++..+ ...+.+.+.+.+++. |
T Consensus 4 ~dVvVVGgG~aGl~aA~~la~~g~~v~lie~~~~~~G~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~l~~~~~~~~g 83 (232)
T 2cul_A 4 YQVLIVGAGFSGAETAFWLAQKGVRVGLLTQSLDAVMMPFLPPKPPFPPGSLLERAYDPKDERVWAFHARAKYLLEGLRP 83 (232)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCSSCCCSCCCTTCHHHHHCCTTCCCHHHHHHHHHHHHHTCTT
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCCEEEEecCCCcCCcccCccccccchhhHHhhhccCCCCCHHHHHHHHHHHHHcCCC
Confidence 3699999999999999999999999999998721 11111 126667788888887 9
Q ss_pred cEEEcCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCcCCCCCCC-C--------------------ccccCeeecC
Q 008860 301 IEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNTKNL-G--------------------LEKVGVKMTK 359 (551)
Q Consensus 301 v~i~~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~~~~l-~--------------------l~~~gl~~~~ 359 (551)
++++ +++|+++..+++....|.+.+|+++++|.||+|+|..++...+ + +.+.+++++.
T Consensus 84 v~i~-~~~v~~i~~~~~~v~~v~~~~g~~i~a~~VV~A~G~~s~~~~~~G~~~~~~g~~g~~~~~~l~~~l~~~g~~~~~ 162 (232)
T 2cul_A 84 LHLF-QATATGLLLEGNRVVGVRTWEGPPARGEKVVLAVGSFLGARLFLGGVVEEAGRLSEASYPDLLEDLSRLGFRFVE 162 (232)
T ss_dssp EEEE-ECCEEEEEEETTEEEEEEETTSCCEECSEEEECCTTCSSCEEEETTEEESEEETTEECCSHHHHHHHHTTCCEEE
T ss_pred cEEE-EeEEEEEEEeCCEEEEEEECCCCEEECCEEEECCCCChhhceecCCccCCCCCCcccchhhhCHHHHhCCCeEEc
Confidence 9999 5699999887665456888889889999999999996553210 0 1122333321
Q ss_pred CCC---------------eEeCC------CC-CCCCCcEEEeCcCCCCCCChHHHHHhHHHHHHHHcC
Q 008860 360 NGA---------------IEVDE------YS-GTAVPSIWAVGDVTDRINLTPVALMEGGALAKTLFQ 405 (551)
Q Consensus 360 ~G~---------------i~vd~------~~-~t~~~~vya~GD~~~~~~~~~~A~~~g~~aa~~i~g 405 (551)
..+ ..+.. .+ +|++|+|||+|||+ .......|+.||+.+|.+|..
T Consensus 163 ~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~t~~p~iya~G~~a-~~g~~~~~~~~g~~~a~~i~~ 229 (232)
T 2cul_A 163 REGEVPETPSTPGYRVRYLAFHPEEWEEKTFRLKRLEGLYAVGLCV-REGDYARMSEEGKRLAEHLLH 229 (232)
T ss_dssp EEEEEC-----CCEEEEEEEECGGGEETTTTEETTSBSEEECGGGT-SCCCHHHHHHHHHHHHHHHHH
T ss_pred cccccCcCCCCCCccCchhhcccCCCCCccccccccccceeeeecc-cCccHHHHHHHHHHHHHHHHh
Confidence 110 00110 11 26999999999999 777888899999999999864
|
| >3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=9.4e-17 Score=167.38 Aligned_cols=98 Identities=17% Similarity=0.060 Sum_probs=74.9
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecC--------cCCCCCCCCccccCee
Q 008860 285 DEDIRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATG--------RRPNTKNLGLEKVGVK 356 (551)
Q Consensus 285 ~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G--------~~p~~~~l~l~~~gl~ 356 (551)
+..+...+.+.+++.| +++++++|++|+.++++ +.|++.+|+++.+|.||+|+| +.|+......+..+..
T Consensus 203 ~~g~~~l~~~~~~~~g-~i~~~~~V~~i~~~~~~-v~v~~~~g~~~~ad~vi~a~~~~~l~~i~~~p~l~~~~~~~~~~~ 280 (431)
T 3k7m_X 203 SNGSADLVDAMSQEIP-EIRLQTVVTGIDQSGDV-VNVTVKDGHAFQAHSVIVATPMNTWRRIVFTPALPERRRSVIEEG 280 (431)
T ss_dssp TTCTHHHHHHHHTTCS-CEESSCCEEEEECSSSS-EEEEETTSCCEEEEEEEECSCGGGGGGSEEESCCCHHHHHHHHHC
T ss_pred CCcHHHHHHHHHhhCC-ceEeCCEEEEEEEcCCe-EEEEECCCCEEEeCEEEEecCcchHhheeeCCCCCHHHHHHHHhC
Confidence 4445666667777778 99999999999887776 779999998899999999999 7887764222222222
Q ss_pred ecCCCCeEeCCCCCCCCCcEEEeCcCCCC
Q 008860 357 MTKNGAIEVDEYSGTAVPSIWAVGDVTDR 385 (551)
Q Consensus 357 ~~~~G~i~vd~~~~t~~~~vya~GD~~~~ 385 (551)
.. ...++|+..++|+.+++|+.||+...
T Consensus 281 ~~-~~~~kv~~~~~~~~~~i~~~~d~~~~ 308 (431)
T 3k7m_X 281 HG-GQGLKILIHVRGAEAGIECVGDGIFP 308 (431)
T ss_dssp CC-CCEEEEEEEEESCCTTEEEEBSSSSS
T ss_pred CC-cceEEEEEEECCCCcCceEcCCCCEE
Confidence 12 23599999999999999999998653
|
| >3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA, GIDA; tRNA modification, FAD binding domain, structural genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A | Back alignment and structure |
|---|
Probab=99.46 E-value=1.1e-13 Score=147.98 Aligned_cols=167 Identities=17% Similarity=0.187 Sum_probs=96.6
Q ss_pred CCccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhhcc-----
Q 008860 71 YDFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDESN----- 145 (551)
Q Consensus 71 ~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~----- 145 (551)
.+|||+|||||+||++||+.|++.|.+|+|||+. ...+| +.+|.|+........+...+..+.
T Consensus 27 ~~yDVIVIGgG~AGl~AAlaLAr~G~kVlLIEk~--------~~~iG----~~~Cnps~ggia~~~lv~ei~algg~~~~ 94 (651)
T 3ces_A 27 DPFDVIIIGGGHAGTEAAMAAARMGQQTLLLTHN--------IDTLG----QMSCNPAIGGIGKGHLVKEVDALGGLMAK 94 (651)
T ss_dssp SCEEEEEECCSHHHHHHHHHHHHTTCCEEEEESC--------GGGTT----CCSSSSEEESTTHHHHHHHHHHTTCSHHH
T ss_pred CcCCEEEECChHHHHHHHHHHHhCCCCEEEEeec--------ccccc----cccccccccchhhHHHHHHHHHhccHHHH
Confidence 3699999999999999999999999999999931 01222 234544321111111111111110
Q ss_pred -------CCCcccC-CCC-------CCChHHHHHHHHHHHHHHHHHHHHHHHh-CCeEEEEeEEEEe--cCCE---EEE-
Q 008860 146 -------GFGWKYG-TEP-------QHDWSTLIANKNAELQRLTGIYKNILIN-AGITLIEGRGKIV--DPHT---VDV- 203 (551)
Q Consensus 146 -------~~g~~~~-~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~i--~~~~---v~v- 203 (551)
.|.+... ..+ ..+.. .+...+.+.+++ .+++++.+.+..+ +... +.+
T Consensus 95 ~~d~~gi~f~~l~~~kgpav~~~r~~~Dr~-----------~~~~~L~e~Le~~~GV~I~~~~V~~L~~e~g~V~GV~t~ 163 (651)
T 3ces_A 95 AIDQAGIQFRILNASKGPAVRATRAQADRV-----------LYRQAVRTALENQPNLMIFQQAVEDLIVENDRVVGAVTQ 163 (651)
T ss_dssp HHHHHEEEEEEESTTSCGGGCEEEEEECHH-----------HHHHHHHHHHHTCTTEEEEECCEEEEEESSSBEEEEEET
T ss_pred HhhhcccchhhhhcccCcccccchhhCCHH-----------HHHHHHHHHHHhCCCCEEEEEEEEEEEecCCEEEEEEEC
Confidence 0000000 000 01111 122334445566 5899988877776 3443 333
Q ss_pred cCEEEEeCeEEEcCCCCCCCCCCCCCCceecchhhhcCCCCCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEe
Q 008860 204 DGKLYSARHILISVGGRPFIPDIPGSEYAIDSDAALDLPSKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFI 275 (551)
Q Consensus 204 ~g~~~~~d~lviAtG~~p~~p~i~g~~~~~~~~~~~~~~~~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~ 275 (551)
++..+.+|.||+|||+.+..+.++|.... .+.+ +| |.++++++..|.++|.+|+.+.
T Consensus 164 dG~~I~Ad~VVLATGt~s~~~~i~G~~~~-----------~~gr---iG-g~~a~eLA~~L~~lG~~v~~~~ 220 (651)
T 3ces_A 164 MGLKFRAKAVVLTVGTFLDGKIHIGLDNY-----------SGGR---AG-DPPSIPLSRRLRELPLRVGRLK 220 (651)
T ss_dssp TSEEEEEEEEEECCSTTTCCEEECC----------------------------CCHHHHHHHTTTCCEEEEC
T ss_pred CCCEEECCEEEEcCCCCccCccccCcccC-----------CCCC---cc-chhhhHHHHHHHhcCCeEEEec
Confidence 67889999999999998887777775421 1233 56 7899999999999999998885
|
| >2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG; modification, 5-carboxymethylaminomethyl uridine, WOBB uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB: 2zxh_A* 2e57_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=2.1e-11 Score=129.83 Aligned_cols=167 Identities=19% Similarity=0.221 Sum_probs=98.7
Q ss_pred CccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhhcc------
Q 008860 72 DFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDESN------ 145 (551)
Q Consensus 72 ~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~------ 145 (551)
+|||+|||||+||++||+.|++.|.+|+|||+. ...+| ..+|.|+........+...+..+.
T Consensus 27 ~yDVIVIGgG~AGl~AAlalAr~G~kVlLIEk~--------~~~iG----~~~Cnps~GGia~g~lv~eldalgg~~~~~ 94 (637)
T 2zxi_A 27 EFDVVVIGGGHAGIEAALAAARMGAKTAMFVLN--------ADTIG----QMSCNPAIGGIAKGIVVREIDALGGEMGKA 94 (637)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESC--------GGGTT----CCCSCSEEECTTHHHHHHHHHHHTCSHHHH
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCCEEEEEec--------ccccC----CcCccccccccchHHHHHHHHHhhhHHHHH
Confidence 599999999999999999999999999999931 11233 234544321000000111111000
Q ss_pred ------CCCcccC-CCC-------CCChHHHHHHHHHHHHHHHHHHHHHHHh-CCeEEEEeEEEEe--cCCE---EEE-c
Q 008860 146 ------GFGWKYG-TEP-------QHDWSTLIANKNAELQRLTGIYKNILIN-AGITLIEGRGKIV--DPHT---VDV-D 204 (551)
Q Consensus 146 ------~~g~~~~-~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~i--~~~~---v~v-~ 204 (551)
.|.+... ..+ ..+.. .+...+.+.+++ .+++++.+.+..+ +... +.+ +
T Consensus 95 ~d~~gi~f~~l~~~kGpav~~~r~~~Dr~-----------~~~~~L~~~Le~~~GVeI~~~~Vt~L~~e~g~V~GV~t~d 163 (637)
T 2zxi_A 95 IDQTGIQFKMLNTRKGKAVQSPRAQADKK-----------RYREYMKKVCENQENLYIKQEEVVDIIVKNNQVVGVRTNL 163 (637)
T ss_dssp HHHHEEEEEEESTTSCGGGCEEEEEECHH-----------HHHHHHHHHHHTCTTEEEEESCEEEEEESSSBEEEEEETT
T ss_pred hhhcccceeecccccCccccchhhhCCHH-----------HHHHHHHHHHHhCCCCEEEEeEEEEEEecCCEEEEEEECC
Confidence 0100000 000 01111 122334445565 5899988777764 3343 333 6
Q ss_pred CEEEEeCeEEEcCCCCCCCCCCCCCCceecchhhhcCCCCCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEee
Q 008860 205 GKLYSARHILISVGGRPFIPDIPGSEYAIDSDAALDLPSKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIR 276 (551)
Q Consensus 205 g~~~~~d~lviAtG~~p~~p~i~g~~~~~~~~~~~~~~~~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~ 276 (551)
+..+.+|.||+|||..+..+.++|..... +.+ + |+..+++++..|.++|.+++.+..
T Consensus 164 G~~i~AdaVVLATG~~s~~~~~~G~~~~~-----------~Gr---~-G~~~A~~la~~L~~lG~~v~~l~t 220 (637)
T 2zxi_A 164 GVEYKTKAVVVTTGTFLNGVIYIGDKMIP-----------GGR---L-GEPRSEGLSDFYRRFDFPLIRFKT 220 (637)
T ss_dssp SCEEECSEEEECCTTCBTCEEEETTEEEE-----------CSB---T-TBCCBCTHHHHHHHTTCCCEEEEE
T ss_pred CcEEEeCEEEEccCCCccCceeccceecC-----------CCC---C-CchhHHHHHHHHHhcCCceEEecC
Confidence 77899999999999988877677654211 122 2 356788999999999988776653
|
| >1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6 | Back alignment and structure |
|---|
Probab=99.27 E-value=1.2e-11 Score=121.11 Aligned_cols=160 Identities=13% Similarity=0.157 Sum_probs=111.7
Q ss_pred CeEEEEcCcHHHHHHHHHHHhC-CCeEEEEeecCccCCC--------------------------------------CCH
Q 008860 246 EKIAIVGGGYIALEFAGIFSGL-TSEVHVFIRQKKVLRG--------------------------------------FDE 286 (551)
Q Consensus 246 ~~vvViG~G~~g~e~a~~l~~~-g~~Vtlv~~~~~~l~~--------------------------------------~~~ 286 (551)
.+|+|||+|++|+.+|..|++. |.+|+++++.+.+... ...
T Consensus 40 ~dVvIIGgG~aGl~aA~~la~~~G~~V~viEk~~~~gg~~~~~~~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~ 119 (284)
T 1rp0_A 40 TDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSPGGGAWLGGQLFSAMIVRKPAHLFLDEIGVAYDEQDTYVVVKHAA 119 (284)
T ss_dssp EEEEEECCSHHHHHHHHHHHTSTTSCEEEEESSSSCCTTTTCCSTTCCCEEEETTTHHHHHHHTCCCEECSSEEEESCHH
T ss_pred cCEEEECccHHHHHHHHHHHHcCCCeEEEEECCCCCCCceecCCcchHHHHcCcHHHHHHHHcCCCcccCCCEEEecCHH
Confidence 3799999999999999999997 9999999988654210 123
Q ss_pred HHHHHHHHHHHh-cCcEEEcCcccEEEEEcCCceEEEEEC---------CC-----eEEEeeEEEEecCcCCCCCCCCcc
Q 008860 287 DIRDFVAEQMSL-RGIEFHTEESPQAILKSTDGSLSVKTN---------KG-----TVDGFSHVMFATGRRPNTKNLGLE 351 (551)
Q Consensus 287 ~~~~~l~~~l~~-~Gv~i~~~~~v~~i~~~~~~~~~V~~~---------~G-----~~i~~d~vi~a~G~~p~~~~l~l~ 351 (551)
++...+.+.+.+ .|++++++++|+++..+++.+..|.+. +| .++++|.||+|+|..++......+
T Consensus 120 ~~~~~l~~~~~~~~gv~i~~~~~V~~i~~~~~~v~gv~~~~~~~~~~~~~g~~g~~~~i~ad~VV~AtG~~s~~~~~~~~ 199 (284)
T 1rp0_A 120 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGNRVGGVVTNWALVAQNHHTQSCMDPNVMEAKIVVSSCGHDGPFGATGVK 199 (284)
T ss_dssp HHHHHHHHHHHTSTTEEEEETEEEEEEEEETTEEEEEEEEEHHHHTCTTTSSCCCCEEEEEEEEEECCCSSSTTTTHHHH
T ss_pred HHHHHHHHHHHhcCCCEEEcCcEEEEEEecCCeEEEEEEeccccccccCccccCceEEEECCEEEECCCCchHHHHHHHH
Confidence 444556666655 699999999999998776653345442 32 579999999999988765421111
Q ss_pred ---ccC--eeecCCCCeEeCC-------CCCCCCCcEEEeCcCCCC-------CCChHHHHHhHHHHHHHHcC
Q 008860 352 ---KVG--VKMTKNGAIEVDE-------YSGTAVPSIWAVGDVTDR-------INLTPVALMEGGALAKTLFQ 405 (551)
Q Consensus 352 ---~~g--l~~~~~G~i~vd~-------~~~t~~~~vya~GD~~~~-------~~~~~~A~~~g~~aa~~i~g 405 (551)
..+ +.+....++.+|. ..+++.|++|++||++.. .+.+..+..+|+.+|.++..
T Consensus 200 ~~~~~g~~~~v~~~~g~~~~~~~~~~v~~~~~~~p~i~a~G~~~~~~~g~~~~gp~~~~~~~sG~~~a~~i~~ 272 (284)
T 1rp0_A 200 RLKSIGMIDHVPGMKALDMNTAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAGQLALK 272 (284)
T ss_dssp HHHHTTSSSCCCCCEEECHHHHHHHHHHHCEEEETTEEECTHHHHHHHTCEECCSCCHHHHHHHHHHHHHHHH
T ss_pred HhhhccCCCCcCCcCCchhhhhhHHHhhccccccCCEEEEeeehhhhcCCCCcChHHHHHHHhHHHHHHHHHH
Confidence 111 1112222344442 345678999999998741 24566889999999999874
|
| >3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis} | Back alignment and structure |
|---|
Probab=99.24 E-value=9.3e-11 Score=118.83 Aligned_cols=59 Identities=8% Similarity=0.009 Sum_probs=50.8
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEECCC--eEEEeeEEEEecCcCC
Q 008860 285 DEDIRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTNKG--TVDGFSHVMFATGRRP 343 (551)
Q Consensus 285 ~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~G--~~i~~d~vi~a~G~~p 343 (551)
+..+.+.+.+.+++.|++++++++|++++.++++.+.|.+.+| .++.+|.||+|+|...
T Consensus 149 ~~~~~~~l~~~~~~~Gv~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~a~~VV~A~G~~s 209 (369)
T 3dme_A 149 SHALMLAYQGDAESDGAQLVFHTPLIAGRVRPEGGFELDFGGAEPMTLSCRVLINAAGLHA 209 (369)
T ss_dssp HHHHHHHHHHHHHHTTCEEECSCCEEEEEECTTSSEEEEECTTSCEEEEEEEEEECCGGGH
T ss_pred HHHHHHHHHHHHHHCCCEEECCCEEEEEEEcCCceEEEEECCCceeEEEeCEEEECCCcch
Confidence 4567888899999999999999999999987665467888888 4799999999999875
|
| >3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.16 E-value=3.2e-10 Score=116.89 Aligned_cols=57 Identities=21% Similarity=0.373 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCcCCC
Q 008860 286 EDIRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPN 344 (551)
Q Consensus 286 ~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~ 344 (551)
.++.+.+.+.+++.|++++++++|+++..++++ +.|.+.+| ++.+|.||+|+|..+.
T Consensus 132 ~~l~~~L~~~l~~~Gv~i~~~~~V~~i~~~~~~-~~V~~~~g-~i~ad~VIlAtG~~S~ 188 (417)
T 3v76_A 132 KDIIRMLMAEMKEAGVQLRLETSIGEVERTASG-FRVTTSAG-TVDAASLVVASGGKSI 188 (417)
T ss_dssp HHHHHHHHHHHHHHTCEEECSCCEEEEEEETTE-EEEEETTE-EEEESEEEECCCCSSC
T ss_pred HHHHHHHHHHHHHCCCEEEECCEEEEEEEeCCE-EEEEECCc-EEEeeEEEECCCCccC
Confidence 456777888899999999999999999887766 78888888 7999999999999874
|
| >1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A* | Back alignment and structure |
|---|
Probab=99.07 E-value=1.8e-09 Score=110.16 Aligned_cols=58 Identities=17% Similarity=0.157 Sum_probs=49.7
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCcCCC
Q 008860 285 DEDIRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPN 344 (551)
Q Consensus 285 ~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~ 344 (551)
+..+.+.+.+.+++.|++++.+++|+++..++++ +.|.+.+| ++.+|.||+|+|....
T Consensus 163 ~~~~~~~l~~~~~~~g~~i~~~~~v~~i~~~~~~-~~v~~~~g-~~~a~~vV~A~G~~s~ 220 (382)
T 1ryi_A 163 PYFVCKAYVKAAKMLGAEIFEHTPVLHVERDGEA-LFIKTPSG-DVWANHVVVASGVWSG 220 (382)
T ss_dssp HHHHHHHHHHHHHHTTCEEETTCCCCEEECSSSS-EEEEETTE-EEEEEEEEECCGGGTH
T ss_pred HHHHHHHHHHHHHHCCCEEEcCCcEEEEEEECCE-EEEEcCCc-eEEcCEEEECCChhHH
Confidence 4567888889999999999999999999877666 57888777 7999999999998654
|
| >1kf6_A Fumarate reductase flavoprotein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1kfy_A* 1l0v_A* 2b76_A* 3cir_A* 3p4p_A* 3p4q_A* 3p4r_A* 3p4s_A* | Back alignment and structure |
|---|
Probab=99.06 E-value=4.1e-10 Score=121.55 Aligned_cols=32 Identities=38% Similarity=0.494 Sum_probs=30.5
Q ss_pred CccEEEECCChHHHHHHHHHHhCC--CcEEEEcc
Q 008860 72 DFDLFTIGAGSGGVRASRFAANFG--ASVAICEL 103 (551)
Q Consensus 72 ~~dVvIIGgG~aGl~aA~~l~~~G--~~V~liE~ 103 (551)
++||||||||+||+++|+.|++.| .+|+||||
T Consensus 5 ~~DVvIVG~G~AGl~aAl~la~~G~~~~V~vlEk 38 (602)
T 1kf6_A 5 QADLAIVGAGGAGLRAAIAAAQANPNAKIALISK 38 (602)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHHCTTCCEEEEES
T ss_pred cCCEEEECCCHHHHHHHHHHHhcCCCCcEEEEeC
Confidence 589999999999999999999999 99999995
|
| >3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG, structural genomics, PSI-2, prote structure initiative; HET: FAD; 2.15A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.05 E-value=1.3e-10 Score=123.27 Aligned_cols=60 Identities=13% Similarity=0.101 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCcCCCC
Q 008860 286 EDIRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNT 345 (551)
Q Consensus 286 ~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~~ 345 (551)
..+.+.+.+.+++.|++++++++|+++..++++...|.+.+|+++.+|.||+|+|..+..
T Consensus 220 ~~l~~~L~~~l~~~Gv~I~~~t~V~~I~~~~~~v~gV~l~~G~~i~Ad~VVlA~G~~s~~ 279 (549)
T 3nlc_A 220 VTMIEKMRATIIELGGEIRFSTRVDDLHMEDGQITGVTLSNGEEIKSRHVVLAVGHSARD 279 (549)
T ss_dssp HHHHHHHHHHHHHTTCEEESSCCEEEEEESSSBEEEEEETTSCEEECSCEEECCCTTCHH
T ss_pred HHHHHHHHHHHHhcCCEEEeCCEEEEEEEeCCEEEEEEECCCCEEECCEEEECCCCChhh
Confidence 567778888899999999999999999987766566899999999999999999998853
|
| >1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.05 E-value=9.4e-09 Score=104.77 Aligned_cols=58 Identities=21% Similarity=0.117 Sum_probs=48.8
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCcCC
Q 008860 285 DEDIRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRP 343 (551)
Q Consensus 285 ~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p 343 (551)
+..+...+.+.+++.|++++.+++|++++.++++...|.+.+| ++.+|.||+|+|...
T Consensus 148 ~~~l~~~l~~~~~~~Gv~i~~~~~v~~i~~~~~~v~gv~~~~g-~i~a~~VV~A~G~~s 205 (382)
T 1y56_B 148 PFEATTAFAVKAKEYGAKLLEYTEVKGFLIENNEIKGVKTNKG-IIKTGIVVNATNAWA 205 (382)
T ss_dssp HHHHHHHHHHHHHHTTCEEECSCCEEEEEESSSBEEEEEETTE-EEECSEEEECCGGGH
T ss_pred HHHHHHHHHHHHHHCCCEEECCceEEEEEEECCEEEEEEECCc-EEECCEEEECcchhH
Confidence 4566778888899999999999999999987766333888887 699999999999875
|
| >2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=1.2e-08 Score=104.29 Aligned_cols=72 Identities=18% Similarity=0.177 Sum_probs=56.4
Q ss_pred CeEEEEeecCccCCCCCHHHHHHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCcCCC
Q 008860 269 SEVHVFIRQKKVLRGFDEDIRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPN 344 (551)
Q Consensus 269 ~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~ 344 (551)
..+.++...+..+. +..+...+.+.+++.|++++.+++|++++.++++ +.|.+.+| ++.+|.||+|+|..+.
T Consensus 135 ~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~Gv~i~~~~~v~~i~~~~~~-~~v~~~~g-~~~a~~vV~A~G~~~~ 206 (389)
T 2gf3_A 135 NYNAIFEPNSGVLF--SENCIRAYRELAEARGAKVLTHTRVEDFDISPDS-VKIETANG-SYTADKLIVSMGAWNS 206 (389)
T ss_dssp TEEEEEETTCEEEE--HHHHHHHHHHHHHHTTCEEECSCCEEEEEECSSC-EEEEETTE-EEEEEEEEECCGGGHH
T ss_pred CceEEEeCCCcEEe--HHHHHHHHHHHHHHCCCEEEcCcEEEEEEecCCe-EEEEeCCC-EEEeCEEEEecCccHH
Confidence 44566655443332 4577888899999999999999999999987666 67888776 6999999999998754
|
| >3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A* | Back alignment and structure |
|---|
Probab=99.04 E-value=5.3e-09 Score=114.96 Aligned_cols=59 Identities=15% Similarity=0.154 Sum_probs=51.7
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCcCCC
Q 008860 285 DEDIRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPN 344 (551)
Q Consensus 285 ~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~ 344 (551)
...+...+.+.+++.|++++++++|+++..++++ +.|.+.+|.++.+|.||+|+|....
T Consensus 416 p~~l~~aL~~~a~~~Gv~i~~~t~V~~l~~~~~~-v~V~t~~G~~i~Ad~VVlAtG~~s~ 474 (676)
T 3ps9_A 416 PAELTRNVLELAQQQGLQIYYQYQLQNFSRKDDC-WLLNFAGDQQATHSVVVLANGHQIS 474 (676)
T ss_dssp HHHHHHHHHHHHHHTTCEEEESCCEEEEEEETTE-EEEEETTSCEEEESEEEECCGGGGG
T ss_pred HHHHHHHHHHHHHhCCCEEEeCCeeeEEEEeCCe-EEEEECCCCEEECCEEEECCCcchh
Confidence 4567788888999999999999999999987776 7888888888999999999998754
|
| >1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis, FAD, oxidoreductase; 2.20A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A* | Back alignment and structure |
|---|
Probab=99.03 E-value=1.4e-10 Score=123.62 Aligned_cols=31 Identities=23% Similarity=0.370 Sum_probs=29.7
Q ss_pred CccEEEECCChHHHHHHHHHHhCCCcEEEEcc
Q 008860 72 DFDLFTIGAGSGGVRASRFAANFGASVAICEL 103 (551)
Q Consensus 72 ~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~ 103 (551)
++||||||||+||++||+.|++ |.+|+||||
T Consensus 8 ~~DVvVVG~G~AGl~aAl~la~-G~~V~vlEk 38 (540)
T 1chu_A 8 SCDVLIIGSGAAGLSLALRLAD-QHQVIVLSK 38 (540)
T ss_dssp ECSEEEECCSHHHHHHHHHHTT-TSCEEEECS
T ss_pred CCCEEEECccHHHHHHHHHHhc-CCcEEEEEC
Confidence 5899999999999999999999 999999994
|
| >3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A* | Back alignment and structure |
|---|
Probab=99.03 E-value=5.9e-09 Score=114.76 Aligned_cols=59 Identities=15% Similarity=0.222 Sum_probs=50.7
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEECCCe-EEEeeEEEEecCcCCC
Q 008860 285 DEDIRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTNKGT-VDGFSHVMFATGRRPN 344 (551)
Q Consensus 285 ~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~G~-~i~~d~vi~a~G~~p~ 344 (551)
+..+...+.+.+++.|++++++++|+++..++++ +.|.+.+|+ ++.+|.||+|+|....
T Consensus 411 p~~l~~aL~~~a~~~Gv~i~~~t~V~~l~~~~~~-v~V~t~~G~~~i~Ad~VVlAtG~~s~ 470 (689)
T 3pvc_A 411 PSDLTHALMMLAQQNGMTCHYQHELQRLKRIDSQ-WQLTFGQSQAAKHHATVILATGHRLP 470 (689)
T ss_dssp HHHHHHHHHHHHHHTTCEEEESCCEEEEEECSSS-EEEEEC-CCCCEEESEEEECCGGGTT
T ss_pred HHHHHHHHHHHHHhCCCEEEeCCeEeEEEEeCCe-EEEEeCCCcEEEECCEEEECCCcchh
Confidence 4567788888999999999999999999988777 788888886 7999999999998753
|
| >2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B* 3ada_B* | Back alignment and structure |
|---|
Probab=99.02 E-value=5.5e-09 Score=107.31 Aligned_cols=57 Identities=16% Similarity=0.184 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCcCC
Q 008860 286 EDIRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRP 343 (551)
Q Consensus 286 ~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p 343 (551)
..+.+.+.+.+++.|++++.+++|+++..++++.+.|.+.+| ++.+|.||+|+|...
T Consensus 174 ~~~~~~l~~~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~g-~~~a~~vV~a~G~~s 230 (405)
T 2gag_B 174 DHVAWAFARKANEMGVDIIQNCEVTGFIKDGEKVTGVKTTRG-TIHAGKVALAGAGHS 230 (405)
T ss_dssp HHHHHHHHHHHHHTTCEEECSCCEEEEEESSSBEEEEEETTC-CEEEEEEEECCGGGH
T ss_pred HHHHHHHHHHHHHCCCEEEcCCeEEEEEEeCCEEEEEEeCCc-eEECCEEEECCchhH
Confidence 467788889999999999999999999987666567888888 699999999999865
|
| >2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A* | Back alignment and structure |
|---|
Probab=99.02 E-value=1e-08 Score=105.13 Aligned_cols=56 Identities=20% Similarity=0.286 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCcCC
Q 008860 286 EDIRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRP 343 (551)
Q Consensus 286 ~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p 343 (551)
..+...+.+.+++.|++++++++|++++.++++ +.|.+.+| ++.+|.||+|+|...
T Consensus 153 ~~~~~~l~~~a~~~Gv~i~~~~~V~~i~~~~~~-v~v~t~~g-~i~a~~VV~A~G~~s 208 (397)
T 2oln_A 153 RGTLAALFTLAQAAGATLRAGETVTELVPDADG-VSVTTDRG-TYRAGKVVLACGPYT 208 (397)
T ss_dssp HHHHHHHHHHHHHTTCEEEESCCEEEEEEETTE-EEEEESSC-EEEEEEEEECCGGGH
T ss_pred HHHHHHHHHHHHHcCCEEECCCEEEEEEEcCCe-EEEEECCC-EEEcCEEEEcCCcCh
Confidence 356677888888999999999999999887665 66777766 699999999999863
|
| >3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=1.4e-08 Score=105.55 Aligned_cols=60 Identities=12% Similarity=0.146 Sum_probs=51.4
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCc---ccEEEEEcCCceEEEEECCCeEEEeeEEEEecCcCCC
Q 008860 285 DEDIRDFVAEQMSLRGIEFHTEE---SPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPN 344 (551)
Q Consensus 285 ~~~~~~~l~~~l~~~Gv~i~~~~---~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~ 344 (551)
...+...+.+.+++.|+++++++ +|++|..++++...|++.+|+++.+|.||+|+|....
T Consensus 160 ~~~~~~~L~~~a~~~Gv~i~~~t~~~~V~~i~~~~~~v~gV~t~~G~~i~Ad~VV~AtG~~s~ 222 (438)
T 3dje_A 160 ARNALVAAAREAQRMGVKFVTGTPQGRVVTLIFENNDVKGAVTADGKIWRAERTFLCAGASAG 222 (438)
T ss_dssp HHHHHHHHHHHHHHTTCEEEESTTTTCEEEEEEETTEEEEEEETTTEEEECSEEEECCGGGGG
T ss_pred HHHHHHHHHHHHHhcCCEEEeCCcCceEEEEEecCCeEEEEEECCCCEEECCEEEECCCCChh
Confidence 35677888899999999999999 9999988766644499999988999999999998754
|
| >3cp8_A TRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA; rossmann fold, FAD-binding domain, dinucleotide-binding motif; HET: FAD; 3.20A {Chlorobium tepidum} | Back alignment and structure |
|---|
Probab=98.99 E-value=1.4e-09 Score=116.36 Aligned_cols=168 Identities=17% Similarity=0.144 Sum_probs=96.7
Q ss_pred CCccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhhcc-----
Q 008860 71 YDFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDESN----- 145 (551)
Q Consensus 71 ~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~----- 145 (551)
.+|||+|||||+||++||+.|++.|.+|+|||+. ...+|+ .+|.|+.......++...+....
T Consensus 20 ~~yDVIVIGgG~AGl~AAlaLAr~G~kVlLIEk~--------~~~iG~----~~c~ps~gGia~~~lv~el~al~g~~~~ 87 (641)
T 3cp8_A 20 HMYDVIVVGAGHAGCEAALAVARGGLHCLLITSD--------LSAVAR----MSCNPAIGGVAKGQITREIDALGGEMGK 87 (641)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHHTTCCEEEEESC--------GGGTTC----CSSCSEEECHHHHHHHHHHHHHTCSHHH
T ss_pred CcCCEEEECccHHHHHHHHHHHHCCCcEEEEEec--------ccccCC----CccccchhhhhHHHHHHHHHhcccHHHH
Confidence 4699999999999999999999999999999931 112333 33444321111111111111000
Q ss_pred -------CCCcccC-CCC-------CCChHHHHHHHHHHHHHHHHHHHHHHHh-CCeEEEEeEEEEe--cCCEEE---E-
Q 008860 146 -------GFGWKYG-TEP-------QHDWSTLIANKNAELQRLTGIYKNILIN-AGITLIEGRGKIV--DPHTVD---V- 203 (551)
Q Consensus 146 -------~~g~~~~-~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~i--~~~~v~---v- 203 (551)
.|..... ..+ ..+.. .+...+.+.+++ .+++++.+.+..+ +...+. +
T Consensus 88 ~~d~~gi~f~~l~~~kgpav~~~r~~~Dr~-----------~l~~~L~~~l~~~~GV~I~~~~V~~L~~d~g~V~GV~t~ 156 (641)
T 3cp8_A 88 AIDATGIQFRMLNRSKGPAMHSPRAQADKT-----------QYSLYMRRIVEHEPNIDLLQDTVIGVSANSGKFSSVTVR 156 (641)
T ss_dssp HHHHHEEEEEEECSSSCTTTCEEEEEECHH-----------HHHHHHHHHHHTCTTEEEEECCEEEEEEETTEEEEEEET
T ss_pred HHHhcCCchhhcccccCccccchhhhcCHH-----------HHHHHHHHHHHhCCCCEEEeeEEEEEEecCCEEEEEEEC
Confidence 0100000 001 11211 122233444555 4899988877664 345443 3
Q ss_pred cCEEEEeCeEEEcCCCCCCCCCCCCCCceecchhhhcCCCCCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEe
Q 008860 204 DGKLYSARHILISVGGRPFIPDIPGSEYAIDSDAALDLPSKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFI 275 (551)
Q Consensus 204 ~g~~~~~d~lviAtG~~p~~p~i~g~~~~~~~~~~~~~~~~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~ 275 (551)
++..+.+|.||+|||..+..+.++|....- ..+++ |+.++++++..|.+.|.+|..+.
T Consensus 157 ~G~~i~Ad~VVLATG~~s~~~i~~G~~~~~-----------~g~~v---G~~~a~~la~~L~~~G~kv~~l~ 214 (641)
T 3cp8_A 157 SGRAIQAKAAILACGTFLNGLIHIGMDHFP-----------GGRST---AEPPVEGLTESLASLGFSFGRLK 214 (641)
T ss_dssp TSCEEEEEEEEECCTTCBTCEEEETTEEEE-----------CSSST---TSCCBCSHHHHHHHTTCCEEEEE
T ss_pred CCcEEEeCEEEECcCCCCCccceeeeeeec-----------ccccc---CCchhhhhHHHHHhCCceEEeec
Confidence 677899999999999887654443432110 01111 35678899999999999987664
|
| >3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=98.97 E-value=9.4e-09 Score=106.22 Aligned_cols=57 Identities=12% Similarity=0.135 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHhcCcEEEcCcccEEEEEcCCc-eEEEEECCCe--EEEeeEEEEecCcCC
Q 008860 287 DIRDFVAEQMSLRGIEFHTEESPQAILKSTDG-SLSVKTNKGT--VDGFSHVMFATGRRP 343 (551)
Q Consensus 287 ~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~-~~~V~~~~G~--~i~~d~vi~a~G~~p 343 (551)
.+.+.+.+.+++.|++++.+++|++++.++++ .+.+.+.+|+ ++.+|.||.|+|..+
T Consensus 107 ~~~~~L~~~a~~~gv~i~~~~~v~~i~~~~~~~~v~v~~~~g~~~~~~a~~vV~A~G~~s 166 (421)
T 3nix_A 107 NFDKTLADEAARQGVDVEYEVGVTDIKFFGTDSVTTIEDINGNKREIEARFIIDASGYGR 166 (421)
T ss_dssp HHHHHHHHHHHHHTCEEECSEEEEEEEEETTEEEEEEEETTSCEEEEEEEEEEECCGGGC
T ss_pred HHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEEEcCCCCEEEEEcCEEEECCCCch
Confidence 45667778888889999999999999887655 3456778887 699999999999876
|
| >2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1 | Back alignment and structure |
|---|
Probab=98.97 E-value=2.5e-09 Score=111.51 Aligned_cols=59 Identities=19% Similarity=0.262 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCcCCC
Q 008860 286 EDIRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPN 344 (551)
Q Consensus 286 ~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~ 344 (551)
..+.+.+.+.+++.||+++++++|+++..++++++.|.+.+|+++.+|.||+|+|..+.
T Consensus 134 ~~l~~~L~~~~~~~GV~i~~~~~V~~i~~~~~~v~~V~~~~G~~i~Ad~VVlAtGg~s~ 192 (447)
T 2i0z_A 134 QSVVDALLTRLKDLGVKIRTNTPVETIEYENGQTKAVILQTGEVLETNHVVIAVGGKSV 192 (447)
T ss_dssp HHHHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEETTCCEEECSCEEECCCCSSS
T ss_pred HHHHHHHHHHHHHCCCEEEeCcEEEEEEecCCcEEEEEECCCCEEECCEEEECCCCCcC
Confidence 45677788888899999999999999987665557788888888999999999999873
|
| >2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.91 E-value=2.4e-08 Score=101.29 Aligned_cols=57 Identities=16% Similarity=0.109 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCcCCC
Q 008860 286 EDIRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPN 344 (551)
Q Consensus 286 ~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~ 344 (551)
..+...+.+.+++.|++++.+++|++++.++++ +.|.+.+|+ +.+|.||+|+|....
T Consensus 149 ~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~-~~v~~~~g~-~~a~~vV~a~G~~s~ 205 (372)
T 2uzz_A 149 ELAIKTWIQLAKEAGCAQLFNCPVTAIRHDDDG-VTIETADGE-YQAKKAIVCAGTWVK 205 (372)
T ss_dssp HHHHHHHHHHHHHTTCEEECSCCEEEEEECSSS-EEEEESSCE-EEEEEEEECCGGGGG
T ss_pred HHHHHHHHHHHHHCCCEEEcCCEEEEEEEcCCE-EEEEECCCe-EEcCEEEEcCCccHH
Confidence 366778888899999999999999999987666 778888885 999999999998653
|
| >4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis} | Back alignment and structure |
|---|
Probab=98.89 E-value=1.2e-08 Score=108.05 Aligned_cols=58 Identities=9% Similarity=-0.101 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCcCC
Q 008860 286 EDIRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRP 343 (551)
Q Consensus 286 ~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p 343 (551)
..+.+.+.+.+++.|++|+++++|++|..++++...|++.||+++.+|.||++++...
T Consensus 221 ~~l~~aL~~~~~~~Gg~I~~~~~V~~I~~~~~~~~gV~~~~g~~~~ad~VV~~a~~~~ 278 (501)
T 4dgk_A 221 GALVQGMIKLFQDLGGEVVLNARVSHMETTGNKIEAVHLEDGRRFLTQAVASNADVVH 278 (501)
T ss_dssp HHHHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEETTSCEEECSCEEECCC---
T ss_pred cchHHHHHHHHHHhCCceeeecceeEEEeeCCeEEEEEecCCcEEEcCEEEECCCHHH
Confidence 4577888899999999999999999999988876779999999999999999887644
|
| >3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=98.84 E-value=4.9e-08 Score=104.89 Aligned_cols=58 Identities=17% Similarity=0.216 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEEC-CC--eEEEeeEEEEecCcCCC
Q 008860 287 DIRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTN-KG--TVDGFSHVMFATGRRPN 344 (551)
Q Consensus 287 ~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~-~G--~~i~~d~vi~a~G~~p~ 344 (551)
.+...+.+.+++.|++++.+++|+++..+++..+.|.+. +| .++.+|.||.|+|..+.
T Consensus 129 ~l~~~L~~~a~~~Gv~i~~g~~V~~v~~~~g~~~~V~~~~~G~~~~i~AdlVV~AdG~~S~ 189 (591)
T 3i3l_A 129 EFDKLLLDEARSRGITVHEETPVTDVDLSDPDRVVLTVRRGGESVTVESDFVIDAGGSGGP 189 (591)
T ss_dssp HHHHHHHHHHHHTTCEEETTCCEEEEECCSTTCEEEEEEETTEEEEEEESEEEECCGGGCH
T ss_pred HHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCEEEEEEecCCceEEEEcCEEEECCCCcch
Confidence 456777888888999999999999998764444777776 67 57999999999999764
|
| >3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas} | Back alignment and structure |
|---|
Probab=98.83 E-value=1.5e-08 Score=110.06 Aligned_cols=32 Identities=25% Similarity=0.438 Sum_probs=30.4
Q ss_pred CccEEEECCChHHHHHHHHHHhC------CCcEEEEcc
Q 008860 72 DFDLFTIGAGSGGVRASRFAANF------GASVAICEL 103 (551)
Q Consensus 72 ~~dVvIIGgG~aGl~aA~~l~~~------G~~V~liE~ 103 (551)
++||||||||+||++||+.|++. |.+|+||||
T Consensus 22 ~~DVvVVG~G~AGL~AAl~aa~~~~~~~pG~~V~vleK 59 (662)
T 3gyx_A 22 SVDLLMVGGGMGNCGAAFEAVRWADKYAPEAKILLVDK 59 (662)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHHHHHHCTTCCEEEECS
T ss_pred EcCEEEECCCHHHHHHHHHHHhhccccCCCCcEEEEEe
Confidence 58999999999999999999997 999999995
|
| >3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A {Aeropyrum pernix} PDB: 3vqr_A* | Back alignment and structure |
|---|
Probab=98.82 E-value=7.6e-09 Score=107.94 Aligned_cols=59 Identities=17% Similarity=0.173 Sum_probs=48.4
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCcccEEEEE---------------cCCceEEEEECCCeEE--EeeEEEEecCcCCC
Q 008860 285 DEDIRDFVAEQMSLRGIEFHTEESPQAILK---------------STDGSLSVKTNKGTVD--GFSHVMFATGRRPN 344 (551)
Q Consensus 285 ~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~---------------~~~~~~~V~~~~G~~i--~~d~vi~a~G~~p~ 344 (551)
...+...+.+.+++.|++++.+++|+++.. +++++..|.+.+| ++ .+|.||+|+|....
T Consensus 180 ~~~l~~~L~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~~~~~~~~~~v~~V~t~~g-~i~~~Ad~VV~AtG~~s~ 255 (448)
T 3axb_A 180 AEKVVDYYYRRASGAGVEFIFGRRVVGVELKPRVELGIEGEPLPWQEARASAAVLSDG-TRVEVGEKLVVAAGVWSN 255 (448)
T ss_dssp HHHHHHHHHHHHHHTTCEEEESCCEEEEEEEESSCCCCTTSSCTTSCEEEEEEEETTS-CEEEEEEEEEECCGGGHH
T ss_pred HHHHHHHHHHHHHhCCCEEEcCCeEEEEEecccccccccccccccCCCceEEEEeCCC-EEeecCCEEEECCCcCHH
Confidence 347788899999999999999999999987 4444346888888 58 99999999998643
|
| >2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7 | Back alignment and structure |
|---|
Probab=98.82 E-value=1.7e-08 Score=95.43 Aligned_cols=118 Identities=14% Similarity=0.156 Sum_probs=68.5
Q ss_pred CccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhhccCCCccc
Q 008860 72 DFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDESNGFGWKY 151 (551)
Q Consensus 72 ~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~~ 151 (551)
+|||+|||||++|+.+|..|++.|.+|+|||+. ....| .+ |.|...-+...++...+.+ ..
T Consensus 3 ~~dVvVVGgG~aGl~aA~~la~~g~~v~lie~~--------~~~~G-~~----~~~~~~~~~~~~~~~~~~d--~~---- 63 (232)
T 2cul_A 3 AYQVLIVGAGFSGAETAFWLAQKGVRVGLLTQS--------LDAVM-MP----FLPPKPPFPPGSLLERAYD--PK---- 63 (232)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESC--------GGGTT-CC----SSCCCSCCCTTCHHHHHCC--TT----
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCCEEEEecC--------CCcCC-cc----cCccccccchhhHHhhhcc--CC----
Confidence 589999999999999999999999999999931 12233 22 2221000000000000000 00
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhC-CeEEEEeEEEEec--CCE---EEE-cCEEEEeCeEEEcCCCCCCC
Q 008860 152 GTEPQHDWSTLIANKNAELQRLTGIYKNILINA-GITLIEGRGKIVD--PHT---VDV-DGKLYSARHILISVGGRPFI 223 (551)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~i~--~~~---v~v-~g~~~~~d~lviAtG~~p~~ 223 (551)
+ + + ...+...+.+.+++. +++++..++..+. ... +.+ ++.++.+|.||+|+|.....
T Consensus 64 -g-~--~-----------~~~~~~~l~~~~~~~~gv~i~~~~v~~i~~~~~~v~~v~~~~g~~i~a~~VV~A~G~~s~~ 127 (232)
T 2cul_A 64 -D-E--R-----------VWAFHARAKYLLEGLRPLHLFQATATGLLLEGNRVVGVRTWEGPPARGEKVVLAVGSFLGA 127 (232)
T ss_dssp -C-C--C-----------HHHHHHHHHHHHHTCTTEEEEECCEEEEEEETTEEEEEEETTSCCEECSEEEECCTTCSSC
T ss_pred -C-C--C-----------HHHHHHHHHHHHHcCCCcEEEEeEEEEEEEeCCEEEEEEECCCCEEECCEEEECCCCChhh
Confidence 0 0 1 112233444556665 8998876665542 333 333 56689999999999986543
|
| >1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2 d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A* | Back alignment and structure |
|---|
Probab=98.80 E-value=5.2e-08 Score=109.56 Aligned_cols=58 Identities=16% Similarity=0.159 Sum_probs=49.2
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCcCC
Q 008860 285 DEDIRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRP 343 (551)
Q Consensus 285 ~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p 343 (551)
+..+...+.+.+++.|++++.+++|++++.++++...|.+.+| ++.+|.||+|+|...
T Consensus 150 p~~l~~~L~~~a~~~Gv~i~~~t~V~~i~~~~~~v~~V~t~~G-~i~Ad~VV~AaG~~s 207 (830)
T 1pj5_A 150 AARAVQLLIKRTESAGVTYRGSTTVTGIEQSGGRVTGVQTADG-VIPADIVVSCAGFWG 207 (830)
T ss_dssp HHHHHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEETTE-EEECSEEEECCGGGH
T ss_pred HHHHHHHHHHHHHHcCCEEECCceEEEEEEeCCEEEEEEECCc-EEECCEEEECCccch
Confidence 4467788899999999999999999999887666456888877 699999999999864
|
| >3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=98.80 E-value=7.5e-08 Score=99.52 Aligned_cols=61 Identities=16% Similarity=0.196 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCcCCCCCC
Q 008860 286 EDIRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNTKN 347 (551)
Q Consensus 286 ~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~~~~ 347 (551)
..+.+.+.+.+++.|++|+++++|++|..++++...|.+. |+++.+|.||+|+|......+
T Consensus 196 ~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~gv~~~-g~~~~ad~VV~a~~~~~~~~l 256 (425)
T 3ka7_A 196 KGIIDALETVISANGGKIHTGQEVSKILIENGKAAGIIAD-DRIHDADLVISNLGHAATAVL 256 (425)
T ss_dssp HHHHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEET-TEEEECSEEEECSCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCEEEECCceeEEEEECCEEEEEEEC-CEEEECCEEEECCCHHHHHHh
Confidence 5577888899999999999999999999877663447665 778999999999997654433
|
| >3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A* | Back alignment and structure |
|---|
Probab=98.78 E-value=4.7e-08 Score=99.36 Aligned_cols=57 Identities=9% Similarity=0.045 Sum_probs=49.4
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCcCC
Q 008860 285 DEDIRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRP 343 (551)
Q Consensus 285 ~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p 343 (551)
...+...+.+.+++.|++++++++|+++..++++ +.|++.+| ++.+|.||+|+|...
T Consensus 153 ~~~~~~~l~~~a~~~Gv~i~~~~~V~~i~~~~~~-~~V~t~~g-~i~a~~VV~A~G~~s 209 (381)
T 3nyc_A 153 TDALHQGYLRGIRRNQGQVLCNHEALEIRRVDGA-WEVRCDAG-SYRAAVLVNAAGAWC 209 (381)
T ss_dssp HHHHHHHHHHHHHHTTCEEESSCCCCEEEEETTE-EEEECSSE-EEEESEEEECCGGGH
T ss_pred HHHHHHHHHHHHHHCCCEEEcCCEEEEEEEeCCe-EEEEeCCC-EEEcCEEEECCChhH
Confidence 3567788889999999999999999999987766 78888887 699999999999854
|
| >4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase, dehydogenase, steroid catabolism; HET: FAD; 1.60A {Rhodococcus jostii} PDB: 4at2_A* | Back alignment and structure |
|---|
Probab=98.77 E-value=2.1e-08 Score=106.31 Aligned_cols=58 Identities=16% Similarity=0.149 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHhcCcEEEcCcccEEEEEc-CCceEEEEEC-CCe--EEEee-EEEEecCcCCC
Q 008860 287 DIRDFVAEQMSLRGIEFHTEESPQAILKS-TDGSLSVKTN-KGT--VDGFS-HVMFATGRRPN 344 (551)
Q Consensus 287 ~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~-~~~~~~V~~~-~G~--~i~~d-~vi~a~G~~p~ 344 (551)
.+...+.+.+++.|++++++++|+++..+ ++.++.|.+. +++ ++.+| .||+|+|-...
T Consensus 203 ~l~~~L~~~~~~~Gv~i~~~t~v~~L~~~~~g~v~GV~~~~~g~~~~i~A~k~VVlAtGG~~~ 265 (510)
T 4at0_A 203 MLMKPLVETAEKLGVRAEYDMRVQTLVTDDTGRVVGIVAKQYGKEVAVRARRGVVLATGSFAY 265 (510)
T ss_dssp HHHHHHHHHHHHTTCEEECSEEEEEEEECTTCCEEEEEEEETTEEEEEEEEEEEEECCCCCTT
T ss_pred HHHHHHHHHHHHcCCEEEecCEeEEEEECCCCcEEEEEEEECCcEEEEEeCCeEEEeCCChhh
Confidence 67888889999999999999999999987 4444456553 343 58996 99999998763
|
| >3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A* | Back alignment and structure |
|---|
Probab=98.76 E-value=2.8e-08 Score=102.25 Aligned_cols=56 Identities=11% Similarity=0.105 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCcCCCC
Q 008860 287 DIRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNT 345 (551)
Q Consensus 287 ~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~~ 345 (551)
.+.+.+.+.+++ ++++++++|++++.++++ +.|++.+|+++.+|.||.|.|.....
T Consensus 128 ~l~~~L~~~~~~--~~i~~~~~v~~i~~~~~~-v~v~~~~g~~~~a~~vV~AdG~~S~v 183 (407)
T 3rp8_A 128 ELQREMLDYWGR--DSVQFGKRVTRCEEDADG-VTVWFTDGSSASGDLLIAADGSHSAL 183 (407)
T ss_dssp HHHHHHHHHHCG--GGEEESCCEEEEEEETTE-EEEEETTSCEEEESEEEECCCTTCSS
T ss_pred HHHHHHHHhCCc--CEEEECCEEEEEEecCCc-EEEEEcCCCEEeeCEEEECCCcChHH
Confidence 455666666666 899999999999988776 88999999999999999999997654
|
| >1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 | Back alignment and structure |
|---|
Probab=98.76 E-value=2.2e-07 Score=99.80 Aligned_cols=60 Identities=15% Similarity=0.182 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHhcCcEEEcCcccEEEEEcC-CceEEEEEC--CCe--EEEeeEEEEecCcCCCC
Q 008860 286 EDIRDFVAEQMSLRGIEFHTEESPQAILKST-DGSLSVKTN--KGT--VDGFSHVMFATGRRPNT 345 (551)
Q Consensus 286 ~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~-~~~~~V~~~--~G~--~i~~d~vi~a~G~~p~~ 345 (551)
..+.+.+.+.+++.||+++++++|+++..++ +.+..|.+. +|+ ++.+|.||+|+|.....
T Consensus 250 ~~l~~~L~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~g~~~~i~A~~VVlAtGg~s~~ 314 (566)
T 1qo8_A 250 PEIIDTLRKAAKEQGIDTRLNSRVVKLVVNDDHSVVGAVVHGKHTGYYMIGAKSVVLATGGYGMN 314 (566)
T ss_dssp HHHHHHHHHHHHHTTCCEECSEEEEEEEECTTSBEEEEEEEETTTEEEEEEEEEEEECCCCCTTC
T ss_pred HHHHHHHHHHHHhcCCEEEeCCEEEEEEECCCCcEEEEEEEeCCCcEEEEEcCEEEEecCCcccC
Confidence 4566778888889999999999999998876 554445543 776 68999999999987653
|
| >1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ... | Back alignment and structure |
|---|
Probab=98.76 E-value=8.1e-09 Score=109.91 Aligned_cols=51 Identities=18% Similarity=0.053 Sum_probs=41.2
Q ss_pred HHHHHHhcCcEEEcCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCcCC
Q 008860 292 VAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRP 343 (551)
Q Consensus 292 l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p 343 (551)
.....+..|++++++++|++|+.++++ +.|.+.+|+++.+|.||+|++...
T Consensus 218 ~~~l~~~lg~~i~~~~~V~~i~~~~~~-v~v~~~~g~~~~ad~VI~a~p~~~ 268 (520)
T 1s3e_A 218 SERIMDLLGDRVKLERPVIYIDQTREN-VLVETLNHEMYEAKYVISAIPPTL 268 (520)
T ss_dssp HHHHHHHHGGGEESSCCEEEEECSSSS-EEEEETTSCEEEESEEEECSCGGG
T ss_pred HHHHHHHcCCcEEcCCeeEEEEECCCe-EEEEECCCeEEEeCEEEECCCHHH
Confidence 333344458899999999999887766 778999998899999999998643
|
| >3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=98.75 E-value=3e-08 Score=102.56 Aligned_cols=60 Identities=13% Similarity=0.027 Sum_probs=49.7
Q ss_pred CCHHHHHHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCcCCCCC
Q 008860 284 FDEDIRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNTK 346 (551)
Q Consensus 284 ~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~~~ 346 (551)
-...+.+.+.+.+++.|++|+++++|++|..++++ + | +.+|+++.+|.||+|+|......
T Consensus 187 G~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~-v-V-~~~g~~~~ad~Vv~a~~~~~~~~ 246 (421)
T 3nrn_A 187 GCKAVIDELERIIMENKGKILTRKEVVEINIEEKK-V-Y-TRDNEEYSFDVAISNVGVRETVK 246 (421)
T ss_dssp CHHHHHHHHHHHHHTTTCEEESSCCEEEEETTTTE-E-E-ETTCCEEECSEEEECSCHHHHHH
T ss_pred CHHHHHHHHHHHHHHCCCEEEcCCeEEEEEEECCE-E-E-EeCCcEEEeCEEEECCCHHHHHH
Confidence 34678888999999999999999999999876665 5 5 56777899999999999765433
|
| >2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A* | Back alignment and structure |
|---|
Probab=98.74 E-value=2.5e-09 Score=112.91 Aligned_cols=138 Identities=14% Similarity=0.104 Sum_probs=99.0
Q ss_pred EeCeEEEcCCCCCCCCCCCCCC--cee---cchhhhcC--------------CCCCCeEEEEcCcHHHHHHHHHHHhCCC
Q 008860 209 SARHILISVGGRPFIPDIPGSE--YAI---DSDAALDL--------------PSKPEKIAIVGGGYIALEFAGIFSGLTS 269 (551)
Q Consensus 209 ~~d~lviAtG~~p~~p~i~g~~--~~~---~~~~~~~~--------------~~~~~~vvViG~G~~g~e~a~~l~~~g~ 269 (551)
.||++++++|++|..+++++.+ .+. ...+.... .....+|+|||+|+.|+.+|..|++.|.
T Consensus 37 ~~~~l~~~~g~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvIVGgG~aGl~aA~~La~~G~ 116 (497)
T 2bry_A 37 SFQGLCRALGVESGGGLSQYHKIKAQLNYWSAKSLWAKLDKRASQPVYQQGQACTNTKCLVVGAGPCGLRAAVELALLGA 116 (497)
T ss_dssp HHHHHHHHHTCCTTCHHHHHHHHHHTCCSTTTHHHHHHHHHHHTSGGGGGGTTTTTCEEEEECCSHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhCCCCCCCcEeehhhHHHHHHHHHHHhhhhhhhhhccccccCccccCCCCEEEECccHHHHHHHHHHHHCCC
Confidence 4677888999988766544321 111 11111111 2345799999999999999999999999
Q ss_pred eEEEEeecCccCCC-----CC----------------------------HHHHHHHHHHHHhcCcEEEcCcccEEEEEcC
Q 008860 270 EVHVFIRQKKVLRG-----FD----------------------------EDIRDFVAEQMSLRGIEFHTEESPQAILKST 316 (551)
Q Consensus 270 ~Vtlv~~~~~~l~~-----~~----------------------------~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~ 316 (551)
+|+++++.+.+... .+ .++.+.+.+.+++.|++++++++|+++..++
T Consensus 117 ~V~liEk~~~~g~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~ 196 (497)
T 2bry_A 117 RVVLVEKRIKFSRHNVLHLWPFTIHDLRALGAKKFYGRFCTGTLDHISIRQLQLLLLKVALLLGVEIHWGVKFTGLQPPP 196 (497)
T ss_dssp EEEEEESCSSCCCCCEEECCHHHHHHHHTTTHHHHCTTTTCTTCCEEEHHHHHHHHHHHHHHTTCEEEESCEEEEEECCC
T ss_pred eEEEEEeccccCCCCcccCChhHHHHHHHcCCccccccccccccccCCHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEec
Confidence 99999987653210 00 4556677788888999999999999998642
Q ss_pred --CceEEEEE--C-CC--eEEEeeEEEEecCcCCCCC
Q 008860 317 --DGSLSVKT--N-KG--TVDGFSHVMFATGRRPNTK 346 (551)
Q Consensus 317 --~~~~~V~~--~-~G--~~i~~d~vi~a~G~~p~~~ 346 (551)
+..+.|.+ . +| +++.+|.||+|+|..+...
T Consensus 197 ~~~~~~~v~~~~~~~g~~~~i~ad~VV~A~G~~S~~r 233 (497)
T 2bry_A 197 RKGSGWRAQLQPNPPAQLASYEFDVLISAAGGKFVPE 233 (497)
T ss_dssp STTCCBEEEEESCCCHHHHTCCBSEEEECCCTTCCCT
T ss_pred CCCCEEEEEEEECCCCCEEEEEcCEEEECCCCCcccc
Confidence 22356666 4 66 4699999999999988764
|
| >4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A* | Back alignment and structure |
|---|
Probab=98.74 E-value=8.5e-09 Score=113.90 Aligned_cols=42 Identities=24% Similarity=0.268 Sum_probs=37.2
Q ss_pred cCcEEEcCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCc
Q 008860 299 RGIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGR 341 (551)
Q Consensus 299 ~Gv~i~~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~ 341 (551)
.|++|+++++|++|+.++++ +.|++.+|+++.+|.||+|+..
T Consensus 542 ~gl~I~l~t~V~~I~~~~~~-v~V~~~~G~~i~Ad~VIvA~P~ 583 (776)
T 4gut_A 542 EGLDIQLKSPVQCIDYSGDE-VQVTTTDGTGYSAQKVLVTVPL 583 (776)
T ss_dssp TTSCEESSCCEEEEECSSSS-EEEEETTCCEEEESEEEECCCH
T ss_pred hCCcEEcCCeeEEEEEcCCE-EEEEECCCcEEEcCEEEECCCH
Confidence 37899999999999987777 7899999988999999999854
|
| >3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum} | Back alignment and structure |
|---|
Probab=98.74 E-value=5.3e-08 Score=99.29 Aligned_cols=58 Identities=12% Similarity=0.137 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEE-CCCe--EEEeeEEEEecCcCCC
Q 008860 287 DIRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKT-NKGT--VDGFSHVMFATGRRPN 344 (551)
Q Consensus 287 ~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~-~~G~--~i~~d~vi~a~G~~p~ 344 (551)
.+...+.+..++.|++++.+++++.+..+++....+.. .+++ ++.+|.||-|.|....
T Consensus 103 ~~~~~L~~~a~~~G~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~a~~vIgAdG~~S~ 163 (397)
T 3oz2_A 103 KFDKHLAALAAKAGADVWVKSPALGVIKENGKVAGAKIRHNNEIVDVRAKMVIAADGFESE 163 (397)
T ss_dssp HHHHHHHHHHHHHTCEEESSCCEEEEEEETTEEEEEEEEETTEEEEEEEEEEEECCCTTCH
T ss_pred HHHHHHHHHHHhcCcEEeeeeeeeeeeeccceeeeeeecccccceEEEEeEEEeCCccccH
Confidence 34566777788899999999999999887766343433 2333 6899999999998654
|
| >1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A* | Back alignment and structure |
|---|
Probab=98.73 E-value=2.2e-07 Score=99.91 Aligned_cols=59 Identities=14% Similarity=0.139 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHhcCcEEEcCcccEEEEEcC-CceEEEEEC--CCe--EEEeeEEEEecCcCCC
Q 008860 286 EDIRDFVAEQMSLRGIEFHTEESPQAILKST-DGSLSVKTN--KGT--VDGFSHVMFATGRRPN 344 (551)
Q Consensus 286 ~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~-~~~~~V~~~--~G~--~i~~d~vi~a~G~~p~ 344 (551)
..+.+.+.+.+++.||+++++++|+++..++ +.+..|.+. +|+ ++.+|.||+|+|....
T Consensus 255 ~~l~~~L~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~g~~~~i~a~~VVlAtGg~~~ 318 (571)
T 1y0p_A 255 AHVVQVLYDNAVKRNIDLRMNTRGIEVLKDDKGTVKGILVKGMYKGYYWVKADAVILATGGFAK 318 (571)
T ss_dssp HHHHHHHHHHHHHTTCEEESSEEEEEEEECTTSCEEEEEEEETTTEEEEEECSEEEECCCCCTT
T ss_pred HHHHHHHHHHHHhcCCEEEeCCEeeEeEEcCCCeEEEEEEEeCCCcEEEEECCeEEEeCCCccc
Confidence 4567778888889999999999999998866 444445543 676 6899999999998654
|
| >4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=98.72 E-value=1.4e-07 Score=94.64 Aligned_cols=96 Identities=14% Similarity=0.127 Sum_probs=80.6
Q ss_pred CeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCcc---------------------CCCCC-----------HHHHHHHH
Q 008860 246 EKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKV---------------------LRGFD-----------EDIRDFVA 293 (551)
Q Consensus 246 ~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~---------------------l~~~~-----------~~~~~~l~ 293 (551)
.+|+|||+|+.|+.+|..|++.|.+|+++++.+.+ ++.+. .++.+.+.
T Consensus 4 ~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 83 (357)
T 4a9w_A 4 VDVVVIGGGQSGLSAGYFLRRSGLSYVILDAEASPGGAWQHAWHSLHLFSPAGWSSIPGWPMPASQGPYPARAEVLAYLA 83 (357)
T ss_dssp EEEEEECCSHHHHHHHHHHHHSSCCEEEECCSSSSSGGGGGSCTTCBCSSCGGGSCCSSSCCCCCSSSSCBHHHHHHHHH
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCcccCCCCCcEecCchhhhhCCCCCCCCCccCCCCHHHHHHHHH
Confidence 37999999999999999999999999999987642 11110 57778888
Q ss_pred HHHHhcCcEEEcCcccEEEEEcCCceEE-EEECCCeEEEeeEEEEecCcCC
Q 008860 294 EQMSLRGIEFHTEESPQAILKSTDGSLS-VKTNKGTVDGFSHVMFATGRRP 343 (551)
Q Consensus 294 ~~l~~~Gv~i~~~~~v~~i~~~~~~~~~-V~~~~G~~i~~d~vi~a~G~~p 343 (551)
+.+++.|++++++++|++++.+++. +. |.+.+| ++.+|.||+|+|..+
T Consensus 84 ~~~~~~~~~~~~~~~v~~i~~~~~~-~~~v~~~~g-~~~~d~vV~AtG~~~ 132 (357)
T 4a9w_A 84 QYEQKYALPVLRPIRVQRVSHFGER-LRVVARDGR-QWLARAVISATGTWG 132 (357)
T ss_dssp HHHHHTTCCEECSCCEEEEEEETTE-EEEEETTSC-EEEEEEEEECCCSGG
T ss_pred HHHHHcCCEEEcCCEEEEEEECCCc-EEEEEeCCC-EEEeCEEEECCCCCC
Confidence 8899999999999999999987765 66 888887 799999999999643
|
| >2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A* | Back alignment and structure |
|---|
Probab=98.71 E-value=5.4e-08 Score=87.89 Aligned_cols=108 Identities=20% Similarity=0.268 Sum_probs=66.2
Q ss_pred CccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhhccCCCccc
Q 008860 72 DFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDESNGFGWKY 151 (551)
Q Consensus 72 ~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~~ 151 (551)
+|||+|||||++|+.+|..|++.|.+|+|||+ .. +.+... ..+..++.+ +
T Consensus 1 ~~~vvIIGgG~~Gl~~A~~l~~~g~~v~lie~----------~~--~~~~~~---------------~~~~~~~~~--~- 50 (180)
T 2ywl_A 1 MWDVIVVGGGPSGLSAALFLARAGLKVLVLDG----------GR--SKVKGV---------------SRVPNYPGL--L- 50 (180)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTTCCEEEEEC----------SC--CTTTTC---------------SCCCCSTTC--T-
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCcEEEEeC----------CC--CcccCc---------------hhhhccCCC--c-
Confidence 37999999999999999999999999999993 11 000000 000000000 0
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEeEEEEecC--C--EEEE-cCEEEEeCeEEEcCCCCCCCC
Q 008860 152 GTEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIEGRGKIVDP--H--TVDV-DGKLYSARHILISVGGRPFIP 224 (551)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~i~~--~--~v~v-~g~~~~~d~lviAtG~~p~~p 224 (551)
....... +...+.+.+++.+++++.+++..++. . .+.+ ++ ++.+|.||+|+|..|.++
T Consensus 51 ---~~~~~~~-----------~~~~l~~~~~~~gv~v~~~~v~~i~~~~~~~~v~~~~g-~i~ad~vI~A~G~~~~~~ 113 (180)
T 2ywl_A 51 ---DEPSGEE-----------LLRRLEAHARRYGAEVRPGVVKGVRDMGGVFEVETEEG-VEKAERLLLCTHKDPTLP 113 (180)
T ss_dssp ---TCCCHHH-----------HHHHHHHHHHHTTCEEEECCCCEEEECSSSEEEECSSC-EEEEEEEEECCTTCCHHH
T ss_pred ---CCCCHHH-----------HHHHHHHHHHHcCCEEEeCEEEEEEEcCCEEEEEECCC-EEEECEEEECCCCCCCcc
Confidence 0111222 22233445667799998875544432 2 3343 45 899999999999998543
|
| >1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6 | Back alignment and structure |
|---|
Probab=98.69 E-value=8.9e-08 Score=93.39 Aligned_cols=32 Identities=34% Similarity=0.458 Sum_probs=30.3
Q ss_pred CccEEEECCChHHHHHHHHHHhC-CCcEEEEcc
Q 008860 72 DFDLFTIGAGSGGVRASRFAANF-GASVAICEL 103 (551)
Q Consensus 72 ~~dVvIIGgG~aGl~aA~~l~~~-G~~V~liE~ 103 (551)
++||+|||||++|+++|..|++. |.+|+|||+
T Consensus 39 ~~dVvIIGgG~aGl~aA~~la~~~G~~V~viEk 71 (284)
T 1rp0_A 39 ETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQ 71 (284)
T ss_dssp EEEEEEECCSHHHHHHHHHHHTSTTSCEEEEES
T ss_pred ccCEEEECccHHHHHHHHHHHHcCCCeEEEEEC
Confidence 58999999999999999999996 999999994
|
| >3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus} | Back alignment and structure |
|---|
Probab=98.66 E-value=1.6e-07 Score=99.64 Aligned_cols=59 Identities=12% Similarity=0.277 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHhcCcEEEcCcccEEEEEcCCce--EEEEECCCe--EEEeeEEEEecCcCCCC
Q 008860 287 DIRDFVAEQMSLRGIEFHTEESPQAILKSTDGS--LSVKTNKGT--VDGFSHVMFATGRRPNT 345 (551)
Q Consensus 287 ~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~--~~V~~~~G~--~i~~d~vi~a~G~~p~~ 345 (551)
.+.+.+.+.+++.|++++.+++|+++..+++.+ +.+...+|+ ++.+|.||.|+|.....
T Consensus 112 ~l~~~L~~~a~~~Gv~i~~~~~V~~v~~~~~~v~gv~~~~~dG~~~~i~ad~VI~AdG~~S~v 174 (512)
T 3e1t_A 112 RFDDMLLRNSERKGVDVRERHEVIDVLFEGERAVGVRYRNTEGVELMAHARFIVDASGNRTRV 174 (512)
T ss_dssp HHHHHHHHHHHHTTCEEESSCEEEEEEEETTEEEEEEEECSSSCEEEEEEEEEEECCCTTCSS
T ss_pred HHHHHHHHHHHhCCCEEEcCCEEEEEEEECCEEEEEEEEeCCCCEEEEEcCEEEECCCcchHH
Confidence 456777888888999999999999999876653 334445674 79999999999997654
|
| >3da1_A Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9KDW6 X-RAY, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.70A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.66 E-value=2.8e-07 Score=98.66 Aligned_cols=59 Identities=12% Similarity=0.039 Sum_probs=47.8
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEECC---C--eEEEeeEEEEecCcCC
Q 008860 285 DEDIRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTNK---G--TVDGFSHVMFATGRRP 343 (551)
Q Consensus 285 ~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~---G--~~i~~d~vi~a~G~~p 343 (551)
+..+...+.+.+++.|++++++++|+++..+++++..|++.+ | .++.+|.||+|+|...
T Consensus 169 ~~~l~~~L~~~a~~~G~~i~~~~~V~~l~~~~g~v~gV~~~d~~tg~~~~i~A~~VV~AaG~~s 232 (561)
T 3da1_A 169 DARLTLEIMKEAVARGAVALNYMKVESFIYDQGKVVGVVAKDRLTDTTHTIYAKKVVNAAGPWV 232 (561)
T ss_dssp HHHHHHHHHHHHHHTTCEEEESEEEEEEEEETTEEEEEEEEETTTCCEEEEEEEEEEECCGGGH
T ss_pred HHHHHHHHHHHHHHcCCEEEcCCEEEEEEEcCCeEEEEEEEEcCCCceEEEECCEEEECCCcch
Confidence 456778888888999999999999999998776644566643 3 4689999999999864
|
| >3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.65 E-value=1.5e-07 Score=94.39 Aligned_cols=48 Identities=15% Similarity=0.171 Sum_probs=39.9
Q ss_pred HHHHhcCcEEEcCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCcC
Q 008860 294 EQMSLRGIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRR 342 (551)
Q Consensus 294 ~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~ 342 (551)
...++.|++++++++|++|+.++++ +.|.+.+|+.+.+|.||+|+...
T Consensus 117 ~l~~~~g~~i~~~~~V~~i~~~~~~-~~v~~~~g~~~~ad~vV~A~p~~ 164 (342)
T 3qj4_A 117 HYLKESGAEVYFRHRVTQINLRDDK-WEVSKQTGSPEQFDLIVLTMPVP 164 (342)
T ss_dssp HHHHHHTCEEESSCCEEEEEECSSS-EEEEESSSCCEEESEEEECSCHH
T ss_pred HHHHhcCCEEEeCCEEEEEEEcCCE-EEEEECCCCEEEcCEEEECCCHH
Confidence 3334448999999999999988777 78999999878999999998753
|
| >2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A* | Back alignment and structure |
|---|
Probab=98.62 E-value=2.2e-07 Score=99.92 Aligned_cols=58 Identities=24% Similarity=0.298 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHhcCcEEEcCcccEEEEEcCCc-eEEEEEC------CC---------eEEEeeEEEEecCcCCC
Q 008860 287 DIRDFVAEQMSLRGIEFHTEESPQAILKSTDG-SLSVKTN------KG---------TVDGFSHVMFATGRRPN 344 (551)
Q Consensus 287 ~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~-~~~V~~~------~G---------~~i~~d~vi~a~G~~p~ 344 (551)
.+.+.+.+.+++.|++++++++|+++..++++ +..|.+. +| .++.+|.||.|.|..+.
T Consensus 145 ~l~~~L~~~a~~~Gv~i~~g~~v~~l~~~~~g~V~gV~~~~~g~~~~G~~~~~~~~g~~i~Ad~VV~AdG~~S~ 218 (584)
T 2gmh_A 145 HLVSWMGEQAEALGVEVYPGYAAAEILFHEDGSVKGIATNDVGIQKDGAPKTTFERGLELHAKVTIFAEGCHGH 218 (584)
T ss_dssp HHHHHHHHHHHHTTCEEETTCCEEEEEECTTSSEEEEEECCEEECTTSCEEEEEECCCEEECSEEEECCCTTCH
T ss_pred HHHHHHHHHHHHcCCEEEcCCEEEEEEEcCCCCEEEEEeCCccccCCCCcccccCCceEEECCEEEEeeCCCch
Confidence 45677788888889999999999999887644 3447765 33 57999999999999875
|
| >3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein; HET: AHZ; 2.70A {Neurospora crassa} | Back alignment and structure |
|---|
Probab=98.62 E-value=4e-08 Score=97.28 Aligned_cols=47 Identities=28% Similarity=0.406 Sum_probs=37.2
Q ss_pred CccEEEECCChHHHHHHHHHHhC--CCcEEEEccCCCCCCCCCCCCCCCeeccCCCcc
Q 008860 72 DFDLFTIGAGSGGVRASRFAANF--GASVAICELPFSTISSETTGGVGGTCVLRGCVP 127 (551)
Q Consensus 72 ~~dVvIIGgG~aGl~aA~~l~~~--G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p 127 (551)
++||+|||||++|+++|+.|++. |++|+|||+ ....||.+...++.+
T Consensus 79 ~~DVvIVGgG~AGL~aA~~La~~~~G~~V~LiEk---------~~~~GGg~~~~g~~~ 127 (344)
T 3jsk_A 79 ETDIVIVGAGSCGLSAAYVLSTLRPDLRITIVEA---------GVAPGGGAWLGGQLF 127 (344)
T ss_dssp BCSEEEECCSHHHHHHHHHHHHHCTTSCEEEEES---------SSSCCTTTTCCBTTC
T ss_pred cCCEEEECccHHHHHHHHHHHhcCCCCEEEEEeC---------CCccCCccccCCccc
Confidence 58999999999999999999996 999999993 334555544444443
|
| >1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A* | Back alignment and structure |
|---|
Probab=98.61 E-value=9e-07 Score=95.03 Aligned_cols=60 Identities=15% Similarity=0.149 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHhcCcEEEcCcccEEEEEcC-CceEEEEEC--CCe--EEEeeEEEEecCcCCCC
Q 008860 286 EDIRDFVAEQMSLRGIEFHTEESPQAILKST-DGSLSVKTN--KGT--VDGFSHVMFATGRRPNT 345 (551)
Q Consensus 286 ~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~-~~~~~V~~~--~G~--~i~~d~vi~a~G~~p~~ 345 (551)
..+...+.+.+++.||+++++++|+++..++ +.+..|.+. +|+ ++.+|.||+|+|..++.
T Consensus 255 ~~l~~~L~~~~~~~gv~i~~~t~v~~l~~~~~g~v~GV~~~~~~G~~~~i~A~~VVlAtGg~~~~ 319 (572)
T 1d4d_A 255 AHVAQVLWDNAVKRGTDIRLNSRVVRILEDASGKVTGVLVKGEYTGYYVIKADAVVIAAGGFAKN 319 (572)
T ss_dssp HHHHHHHHHHHHHTTCEEESSEEEEEEEEC--CCEEEEEEEETTTEEEEEECSEEEECCCCCTTC
T ss_pred HHHHHHHHHHHHHcCCeEEecCEEEEEEECCCCeEEEEEEEeCCCcEEEEEcCEEEEeCCCCccC
Confidence 3566778888889999999999999998766 554445553 675 58999999999987753
|
| >2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A* | Back alignment and structure |
|---|
Probab=98.61 E-value=1.2e-07 Score=100.11 Aligned_cols=32 Identities=34% Similarity=0.478 Sum_probs=30.7
Q ss_pred CCccEEEECCChHHHHHHHHHHhCCCcEEEEc
Q 008860 71 YDFDLFTIGAGSGGVRASRFAANFGASVAICE 102 (551)
Q Consensus 71 ~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE 102 (551)
..+||+|||||++|+++|..|++.|.+|+|||
T Consensus 91 ~~~dVvIVGgG~aGl~aA~~La~~G~~V~liE 122 (497)
T 2bry_A 91 TNTKCLVVGAGPCGLRAAVELALLGARVVLVE 122 (497)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEE
T ss_pred CCCCEEEECccHHHHHHHHHHHHCCCeEEEEE
Confidence 46899999999999999999999999999999
|
| >3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A* | Back alignment and structure |
|---|
Probab=98.60 E-value=1.6e-07 Score=93.45 Aligned_cols=100 Identities=23% Similarity=0.296 Sum_probs=83.7
Q ss_pred CeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccC---------------CCC----CHHHHHHHHHHHHhcCcEEEcC
Q 008860 246 EKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVL---------------RGF----DEDIRDFVAEQMSLRGIEFHTE 306 (551)
Q Consensus 246 ~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l---------------~~~----~~~~~~~l~~~l~~~Gv~i~~~ 306 (551)
.+|+|||+|+.|+.+|..|++.|.+|+++++.+.+. +.+ ..++...+.+.+++.|++++++
T Consensus 8 ~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (332)
T 3lzw_A 8 YDITIIGGGPVGLFTAFYGGMRQASVKIIESLPQLGGQLSALYPEKYIYDVAGFPKIRAQELINNLKEQMAKFDQTICLE 87 (332)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHHCTTSEECCSTTCSSEEHHHHHHHHHHHHTTSCCEEECS
T ss_pred ceEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCCCceehhcCCCceEeccCCCCCCCHHHHHHHHHHHHHHhCCcEEcc
Confidence 479999999999999999999999999999976321 111 2567777888888899999999
Q ss_pred cccEEEEEcCCceEEEEECCCeEEEeeEEEEecCc---CCCCC
Q 008860 307 ESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGR---RPNTK 346 (551)
Q Consensus 307 ~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~---~p~~~ 346 (551)
++|.+++.++++.+.|.+.+|+ +.+|.||+|+|. .|...
T Consensus 88 ~~v~~i~~~~~~~~~v~~~~g~-~~~d~vVlAtG~~~~~p~~~ 129 (332)
T 3lzw_A 88 QAVESVEKQADGVFKLVTNEET-HYSKTVIITAGNGAFKPRKL 129 (332)
T ss_dssp CCEEEEEECTTSCEEEEESSEE-EEEEEEEECCTTSCCEECCC
T ss_pred CEEEEEEECCCCcEEEEECCCE-EEeCEEEECCCCCcCCCCCC
Confidence 9999999877644788998887 999999999999 66543
|
| >2wdq_A Succinate dehydrogenase flavoprotein subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_A* 2acz_A* 1nek_A* 2wdr_A* 2wdv_A* 2wp9_A* 2ws3_A* 2wu2_A* 2wu5_A* | Back alignment and structure |
|---|
Probab=98.60 E-value=8.5e-07 Score=95.40 Aligned_cols=58 Identities=12% Similarity=0.080 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHhcCcEEEcCcccEEEEEc-CCceEEEEE---CCCe--EEEeeEEEEecCcCC
Q 008860 286 EDIRDFVAEQMSLRGIEFHTEESPQAILKS-TDGSLSVKT---NKGT--VDGFSHVMFATGRRP 343 (551)
Q Consensus 286 ~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~-~~~~~~V~~---~~G~--~i~~d~vi~a~G~~p 343 (551)
..+...+.+.+++.||++++++.|+++..+ ++.+..|.. .+|+ .+.++.||+|+|...
T Consensus 143 ~~l~~~L~~~~~~~gv~i~~~~~v~~L~~~~~g~v~Gv~~~~~~~g~~~~i~A~~VVlAtGg~~ 206 (588)
T 2wdq_A 143 HALLHTLYQQNLKNHTTIFSEWYALDLVKNQDGAVVGCTALCIETGEVVYFKARATVLATGGAG 206 (588)
T ss_dssp HHHHHHHHHHHHHTTCEEEETEEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEEEECCCCCG
T ss_pred HHHHHHHHHHHHhCCCEEEeCcEEEEEEECCCCEEEEEEEEEcCCCeEEEEEcCEEEECCCCCc
Confidence 466777888888899999999999999875 444444543 4665 589999999999754
|
| >3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.59 E-value=8.1e-07 Score=93.23 Aligned_cols=55 Identities=13% Similarity=0.172 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCcC
Q 008860 287 DIRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRR 342 (551)
Q Consensus 287 ~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~ 342 (551)
.+.+.+.+.+++.|++|+++++|++|+.++++.+.|.+ ++.++.+|.||+|++..
T Consensus 235 ~l~~~l~~~l~~~g~~i~~~~~V~~i~~~~~~~~~v~~-~~~~~~ad~vv~a~p~~ 289 (477)
T 3nks_A 235 MLPQALETHLTSRGVSVLRGQPVCGLSLQAEGRWKVSL-RDSSLEADHVISAIPAS 289 (477)
T ss_dssp HHHHHHHHHHHHTTCEEECSCCCCEEEECGGGCEEEEC-SSCEEEESEEEECSCHH
T ss_pred HHHHHHHHHHHhcCCEEEeCCEEEEEEEcCCceEEEEE-CCeEEEcCEEEECCCHH
Confidence 57788888899999999999999999886655466766 45579999999999764
|
| >3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=98.59 E-value=3.4e-08 Score=94.91 Aligned_cols=41 Identities=24% Similarity=0.423 Sum_probs=36.2
Q ss_pred CccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCeec
Q 008860 72 DFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCV 121 (551)
Q Consensus 72 ~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~~ 121 (551)
.+||+|||||||||+||+.|++.|++|+|||+ ...+||.+.
T Consensus 2 t~dV~IIGaGpaGL~aA~~La~~G~~V~v~Ek---------~~~~GG~~~ 42 (336)
T 3kkj_A 2 TVPIAIIGTGIAGLSAAQALTAAGHQVHLFDK---------SRGSGGRMS 42 (336)
T ss_dssp CCCEEEECCSHHHHHHHHHHHHTTCCEEEECS---------SSSSCGGGC
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCCEEEEEC---------CCCCCCccc
Confidence 48999999999999999999999999999994 456777653
|
| >3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A* | Back alignment and structure |
|---|
Probab=98.58 E-value=2.5e-07 Score=91.51 Aligned_cols=99 Identities=16% Similarity=0.120 Sum_probs=81.2
Q ss_pred CeEEEEcCcHHHHHHHHHHHhCCCeEEEEeec--Ccc--------CCCC----CHHHHHHHHHHHHhcCcEEEcCcccEE
Q 008860 246 EKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQ--KKV--------LRGF----DEDIRDFVAEQMSLRGIEFHTEESPQA 311 (551)
Q Consensus 246 ~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~--~~~--------l~~~----~~~~~~~l~~~l~~~Gv~i~~~~~v~~ 311 (551)
.+|+|||+|+.|+.+|..|++.|.+|+++++. ..+ .+.+ ..++.+.+.+.+++.|++++. ++|.+
T Consensus 16 ~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~v~~ 94 (323)
T 3f8d_A 16 FDVIIVGLGPAAYGAALYSARYMLKTLVIGETPGGQLTEAGIVDDYLGLIEIQASDMIKVFNKHIEKYEVPVLL-DIVEK 94 (323)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSTTGGGGGCCEECCSTTSTTEEHHHHHHHHHHHHHTTTCCEEE-SCEEE
T ss_pred cCEEEECccHHHHHHHHHHHHCCCcEEEEeccCCCeecccccccccCCCCCCCHHHHHHHHHHHHHHcCCEEEE-EEEEE
Confidence 58999999999999999999999999999985 111 1222 246777788888899999999 89999
Q ss_pred EEEcCCceEEEEECCCeEEEeeEEEEecCcCCCCC
Q 008860 312 ILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNTK 346 (551)
Q Consensus 312 i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~~~ 346 (551)
+..+++. +.+.+.+|+++.+|.||+|+|..|...
T Consensus 95 i~~~~~~-~~v~~~~g~~~~~d~lvlAtG~~~~~~ 128 (323)
T 3f8d_A 95 IENRGDE-FVVKTKRKGEFKADSVILGIGVKRRKL 128 (323)
T ss_dssp EEEC--C-EEEEESSSCEEEEEEEEECCCCEECCC
T ss_pred EEecCCE-EEEEECCCCEEEcCEEEECcCCCCccC
Confidence 9887655 778899988999999999999987654
|
| >2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G* | Back alignment and structure |
|---|
Probab=98.58 E-value=2.3e-07 Score=97.97 Aligned_cols=57 Identities=11% Similarity=0.075 Sum_probs=49.1
Q ss_pred CHHHHHHHHHHHHhcC-cEEEcCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCcC
Q 008860 285 DEDIRDFVAEQMSLRG-IEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRR 342 (551)
Q Consensus 285 ~~~~~~~l~~~l~~~G-v~i~~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~ 342 (551)
...+.+.+.+.+++.| ++++++++|++|+.++++ +.|++.+|+++.+|.||+|+|..
T Consensus 254 ~~~l~~~l~~~l~~~g~~~i~~~~~V~~i~~~~~~-v~v~~~~g~~~~ad~vI~a~~~~ 311 (495)
T 2vvm_A 254 QSAFARRFWEEAAGTGRLGYVFGCPVRSVVNERDA-ARVTARDGREFVAKRVVCTIPLN 311 (495)
T ss_dssp HHHHHHHHHHHHHTTTCEEEESSCCEEEEEECSSS-EEEEETTCCEEEEEEEEECCCGG
T ss_pred HHHHHHHHHHHhhhcCceEEEeCCEEEEEEEcCCE-EEEEECCCCEEEcCEEEECCCHH
Confidence 3467777888888888 999999999999987766 78889999889999999999864
|
| >3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase; HET: FAD; 2.89A {Streptomyces argillaceus} | Back alignment and structure |
|---|
Probab=98.57 E-value=2.8e-07 Score=98.76 Aligned_cols=58 Identities=14% Similarity=0.133 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEE--CCC-eEEEeeEEEEecCcCCC
Q 008860 286 EDIRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKT--NKG-TVDGFSHVMFATGRRPN 344 (551)
Q Consensus 286 ~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~--~~G-~~i~~d~vi~a~G~~p~ 344 (551)
..+.+.+.+.+++.|++++++++|++++.++++ +.|++ .+| +++.+|.||.|.|.+..
T Consensus 148 ~~l~~~L~~~a~~~gv~i~~~~~v~~l~~~~~~-v~v~~~~~~G~~~~~a~~vV~ADG~~S~ 208 (570)
T 3fmw_A 148 SRTEALLAEHAREAGAEIPRGHEVTRLRQDAEA-VEVTVAGPSGPYPVRARYGVGCDGGRST 208 (570)
T ss_dssp HHHHHHHHHHHHHHTEECCBSCEEEECCBCSSC-EEEEEEETTEEEEEEESEEEECSCSSCH
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCe-EEEEEEeCCCcEEEEeCEEEEcCCCCch
Confidence 456677888888889999999999999887776 66776 788 68999999999998764
|
| >2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces} | Back alignment and structure |
|---|
Probab=98.56 E-value=1.5e-07 Score=99.44 Aligned_cols=57 Identities=9% Similarity=0.085 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEECCCe---EEEeeEEEEecCcCCC
Q 008860 287 DIRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTNKGT---VDGFSHVMFATGRRPN 344 (551)
Q Consensus 287 ~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~G~---~i~~d~vi~a~G~~p~ 344 (551)
.+.+.+.+.+++.|++++++++|++++.++++ ++|++.+++ ++.+|.||.|.|.+..
T Consensus 107 ~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~-v~v~~~~~~g~~~~~a~~vVgADG~~S~ 166 (500)
T 2qa1_A 107 VTETHLEQWATGLGADIRRGHEVLSLTDDGAG-VTVEVRGPEGKHTLRAAYLVGCDGGRSS 166 (500)
T ss_dssp HHHHHHHHHHHHTTCEEEETCEEEEEEEETTE-EEEEEEETTEEEEEEESEEEECCCTTCH
T ss_pred HHHHHHHHHHHHCCCEEECCcEEEEEEEcCCe-EEEEEEcCCCCEEEEeCEEEECCCcchH
Confidence 45677788888889999999999999988776 677777664 7999999999999764
|
| >3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium, SGC, trans PF10_0345, protein transport; 1.85A {Plasmodium falciparum 3D7} | Back alignment and structure |
|---|
Probab=98.55 E-value=4.1e-08 Score=101.93 Aligned_cols=57 Identities=11% Similarity=0.148 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHhcCcEEEcCcccEEEEE-cCCceEEEEECCCeEEEeeEEEEecCcC
Q 008860 286 EDIRDFVAEQMSLRGIEFHTEESPQAILK-STDGSLSVKTNKGTVDGFSHVMFATGRR 342 (551)
Q Consensus 286 ~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~-~~~~~~~V~~~~G~~i~~d~vi~a~G~~ 342 (551)
.++.+.+.+.+++.|++++++++|++|.. +++++..|++.+|+++.||.||++++..
T Consensus 256 ~~L~~aL~r~~~~~Gg~i~l~t~V~~I~~d~~g~v~gV~~~~G~~i~Ad~VI~a~~~~ 313 (475)
T 3p1w_A 256 GGIPEGFSRMCAINGGTFMLNKNVVDFVFDDDNKVCGIKSSDGEIAYCDKVICDPSYV 313 (475)
T ss_dssp THHHHHHHHHHHHC--CEESSCCEEEEEECTTSCEEEEEETTSCEEEEEEEEECGGGC
T ss_pred HHHHHHHHHHHHHcCCEEEeCCeEEEEEEecCCeEEEEEECCCcEEECCEEEECCCcc
Confidence 57888999999999999999999999998 4455567999999899999999999988
|
| >2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis, biosynthetic protein, flavoprotein; HET: TRP; 2.08A {Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A* 2oal_A* 2oam_A | Back alignment and structure |
|---|
Probab=98.55 E-value=4.6e-07 Score=96.92 Aligned_cols=59 Identities=19% Similarity=0.245 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHhc-CcEEEcCcccEEEEEcCCc-eEEEEECCCeEEEeeEEEEecCcCCCC
Q 008860 286 EDIRDFVAEQMSLR-GIEFHTEESPQAILKSTDG-SLSVKTNKGTVDGFSHVMFATGRRPNT 345 (551)
Q Consensus 286 ~~~~~~l~~~l~~~-Gv~i~~~~~v~~i~~~~~~-~~~V~~~~G~~i~~d~vi~a~G~~p~~ 345 (551)
..+.+.+.+.+++. |++++.+ +|+++..++++ .+.|.+.+|+++.+|.||.|+|..+..
T Consensus 194 ~~l~~~L~~~~~~~~Gv~i~~~-~V~~i~~~~~g~~~~v~~~~G~~i~ad~vI~A~G~~S~~ 254 (550)
T 2e4g_A 194 HLVADFLRRFATEKLGVRHVED-RVEHVQRDANGNIESVRTATGRVFDADLFVDCSGFRGLL 254 (550)
T ss_dssp HHHHHHHHHHHHHHSCCEEEEC-CEEEEEECTTSCEEEEEETTSCEEECSEEEECCGGGCCC
T ss_pred HHHHHHHHHHHHhcCCcEEEEC-eEeEEEEcCCCCEEEEEECCCCEEECCEEEECCCCchhh
Confidence 35778888888888 9999999 99999875543 467888899889999999999997755
|
| >2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.55 E-value=7e-07 Score=88.97 Aligned_cols=96 Identities=19% Similarity=0.157 Sum_probs=80.1
Q ss_pred CeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccC---------------CCC----CHHHHHHHHHHHHhcCcEEEcC
Q 008860 246 EKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVL---------------RGF----DEDIRDFVAEQMSLRGIEFHTE 306 (551)
Q Consensus 246 ~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l---------------~~~----~~~~~~~l~~~l~~~Gv~i~~~ 306 (551)
.+|+|||+|+.|+.+|..|++.|.+|+++++.+.+. +.+ ..++.+.+.+.+++.+++++.+
T Consensus 6 ~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 85 (335)
T 2zbw_A 6 TDVLIVGAGPTGLFAGFYVGMRGLSFRFVDPLPEPGGQLTALYPEKYIYDVAGFPKVYAKDLVKGLVEQVAPFNPVYSLG 85 (335)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSCHHHHHTCTTSEECCSTTCSSEEHHHHHHHHHHHHGGGCCEEEES
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCCCeeeccCCCceeeccCCCCCCCHHHHHHHHHHHHHHcCCEEEeC
Confidence 579999999999999999999999999999876431 111 2456677778888889999999
Q ss_pred cccEEEEEcCCceEEEEECCCeEEEeeEEEEecCcC
Q 008860 307 ESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRR 342 (551)
Q Consensus 307 ~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~ 342 (551)
++|.+++.+++. +.|.+.+|+++.+|.||+|+|..
T Consensus 86 ~~v~~i~~~~~~-~~v~~~~g~~~~~~~lv~AtG~~ 120 (335)
T 2zbw_A 86 ERAETLEREGDL-FKVTTSQGNAYTAKAVIIAAGVG 120 (335)
T ss_dssp CCEEEEEEETTE-EEEEETTSCEEEEEEEEECCTTS
T ss_pred CEEEEEEECCCE-EEEEECCCCEEEeCEEEECCCCC
Confidence 999999887654 77888888889999999999994
|
| >3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum} | Back alignment and structure |
|---|
Probab=98.54 E-value=8.8e-07 Score=89.28 Aligned_cols=98 Identities=20% Similarity=0.219 Sum_probs=81.8
Q ss_pred CeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccC---------------CCC----CHHHHHHHHHHHHhcCcEEEcC
Q 008860 246 EKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVL---------------RGF----DEDIRDFVAEQMSLRGIEFHTE 306 (551)
Q Consensus 246 ~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l---------------~~~----~~~~~~~l~~~l~~~Gv~i~~~ 306 (551)
.+|+|||+|+.|+.+|..|++.|.+|+++++.+.+. +.+ ..++.+.+.+.+++.|++++.+
T Consensus 15 ~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 94 (360)
T 3ab1_A 15 RDLTIIGGGPTGIFAAFQCGMNNISCRIIESMPQLGGQLAALYPEKHIYDVAGFPEVPAIDLVESLWAQAERYNPDVVLN 94 (360)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHTCTTSEECCSTTCSSEEHHHHHHHHHHHHHTTCCEEECS
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCCCcccccCCCcccccCCCCCCCCHHHHHHHHHHHHHHhCCEEEcC
Confidence 589999999999999999999999999999875431 111 1566777788888889999999
Q ss_pred cccEEEEEcCCceEEEEECCCeEEEeeEEEEecCcCC
Q 008860 307 ESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRP 343 (551)
Q Consensus 307 ~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p 343 (551)
++|++++.++++.+.|.+.+|+++.+|.||+|+|..+
T Consensus 95 ~~v~~i~~~~~~~~~v~~~~g~~~~~~~li~AtG~~~ 131 (360)
T 3ab1_A 95 ETVTKYTKLDDGTFETRTNTGNVYRSRAVLIAAGLGA 131 (360)
T ss_dssp CCEEEEEECTTSCEEEEETTSCEEEEEEEEECCTTCS
T ss_pred CEEEEEEECCCceEEEEECCCcEEEeeEEEEccCCCc
Confidence 9999998876534788899998899999999999954
|
| >2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces} | Back alignment and structure |
|---|
Probab=98.54 E-value=3e-07 Score=97.02 Aligned_cols=57 Identities=18% Similarity=0.130 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEECCCe---EEEeeEEEEecCcCCC
Q 008860 287 DIRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTNKGT---VDGFSHVMFATGRRPN 344 (551)
Q Consensus 287 ~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~G~---~i~~d~vi~a~G~~p~ 344 (551)
.+.+.+.+.+++.|++++++++|++++.++++ +.|++.+++ ++.+|.||.|.|.+..
T Consensus 108 ~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~-v~v~~~~~~g~~~~~a~~vVgADG~~S~ 167 (499)
T 2qa2_A 108 TTESVLEEWALGRGAELLRGHTVRALTDEGDH-VVVEVEGPDGPRSLTTRYVVGCDGGRST 167 (499)
T ss_dssp HHHHHHHHHHHHTTCEEEESCEEEEEEECSSC-EEEEEECSSCEEEEEEEEEEECCCTTCH
T ss_pred HHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCE-EEEEEEcCCCcEEEEeCEEEEccCcccH
Confidence 45677788888889999999999999988777 778887764 7999999999999764
|
| >3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A* | Back alignment and structure |
|---|
Probab=98.52 E-value=1.3e-06 Score=89.81 Aligned_cols=57 Identities=16% Similarity=0.166 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHh-cC-cEEEcCcccEEEEEcCCceEEEEECC---C--eEEEeeEEEEecCcCCCC
Q 008860 287 DIRDFVAEQMSL-RG-IEFHTEESPQAILKSTDGSLSVKTNK---G--TVDGFSHVMFATGRRPNT 345 (551)
Q Consensus 287 ~~~~~l~~~l~~-~G-v~i~~~~~v~~i~~~~~~~~~V~~~~---G--~~i~~d~vi~a~G~~p~~ 345 (551)
.+.+.+.+.+++ .| ++++++++|++++. +++ +.|.+.+ | +++.+|.||.|.|..+..
T Consensus 108 ~l~~~L~~~~~~~~g~~~v~~~~~v~~i~~-~~~-v~v~~~~~~~g~~~~~~ad~vV~AdG~~S~v 171 (410)
T 3c96_A 108 ELQMILLAAVRERLGQQAVRTGLGVERIEE-RDG-RVLIGARDGHGKPQALGADVLVGADGIHSAV 171 (410)
T ss_dssp HHHHHHHHHHHHHHCTTSEEESEEEEEEEE-ETT-EEEEEEEETTSCEEEEEESEEEECCCTTCHH
T ss_pred HHHHHHHHHHHhhCCCcEEEECCEEEEEec-CCc-cEEEEecCCCCCceEEecCEEEECCCccchh
Confidence 456667777766 36 68999999999988 556 6677654 7 579999999999987654
|
| >3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=98.51 E-value=8.4e-07 Score=86.56 Aligned_cols=99 Identities=15% Similarity=0.162 Sum_probs=79.7
Q ss_pred CeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCcc---------CCC----CCHHHHHHHHHHHHhc-CcEEEcCcccEE
Q 008860 246 EKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKV---------LRG----FDEDIRDFVAEQMSLR-GIEFHTEESPQA 311 (551)
Q Consensus 246 ~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~---------l~~----~~~~~~~~l~~~l~~~-Gv~i~~~~~v~~ 311 (551)
.+|+|||+|+.|+.+|..|++.|.+|+++++.+.. ++. ...++...+.+.+++. +++++.+ +|++
T Consensus 3 ~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~v~~ 81 (297)
T 3fbs_A 3 FDVIIIGGSYAGLSAALQLGRARKNILLVDAGERRNRFASHSHGFLGQDGKAPGEIIAEARRQIERYPTIHWVEG-RVTD 81 (297)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEEECCCCGGGGCSCCCSSTTCTTCCHHHHHHHHHHHHTTCTTEEEEES-CEEE
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCcccccchhhcCCcCCCCCCHHHHHHHHHHHHHhcCCeEEEEe-EEEE
Confidence 47999999999999999999999999999974321 111 1235667777778776 7888755 9999
Q ss_pred EEEcCCceEEEEECCCeEEEeeEEEEecCcCCCCC
Q 008860 312 ILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNTK 346 (551)
Q Consensus 312 i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~~~ 346 (551)
++.++++ ..|.+.+|+++.+|.||+|+|..|...
T Consensus 82 i~~~~~~-~~v~~~~g~~~~~d~vviAtG~~~~~~ 115 (297)
T 3fbs_A 82 AKGSFGE-FIVEIDGGRRETAGRLILAMGVTDELP 115 (297)
T ss_dssp EEEETTE-EEEEETTSCEEEEEEEEECCCCEEECC
T ss_pred EEEcCCe-EEEEECCCCEEEcCEEEECCCCCCCCC
Confidence 9887665 788999998999999999999988654
|
| >3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=98.50 E-value=1.7e-07 Score=98.19 Aligned_cols=41 Identities=10% Similarity=0.108 Sum_probs=36.8
Q ss_pred cEEEcCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCcC
Q 008860 301 IEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRR 342 (551)
Q Consensus 301 v~i~~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~ 342 (551)
++|+++++|++|+.++++ +.|++.+|+++.+|.||+|++..
T Consensus 248 ~~i~~~~~V~~i~~~~~~-~~v~~~~g~~~~ad~vi~a~p~~ 288 (470)
T 3i6d_A 248 TKVYKGTKVTKLSHSGSC-YSLELDNGVTLDADSVIVTAPHK 288 (470)
T ss_dssp EEEECSCCEEEEEECSSS-EEEEESSSCEEEESEEEECSCHH
T ss_pred CEEEeCCceEEEEEcCCe-EEEEECCCCEEECCEEEECCCHH
Confidence 799999999999988777 88999999889999999999753
|
| >3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A* | Back alignment and structure |
|---|
Probab=98.50 E-value=4.7e-07 Score=90.14 Aligned_cols=100 Identities=20% Similarity=0.216 Sum_probs=81.9
Q ss_pred CCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecC----cc------------CCCC-----CHHHHHHHHHHHHhcCcEE
Q 008860 245 PEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQK----KV------------LRGF-----DEDIRDFVAEQMSLRGIEF 303 (551)
Q Consensus 245 ~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~----~~------------l~~~-----~~~~~~~l~~~l~~~Gv~i 303 (551)
..+|+|||+|+.|+.+|..|++.|.+|+++++.+ .+ ++.+ ..++...+.+.+++.|+++
T Consensus 22 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~vie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i 101 (338)
T 3itj_A 22 HNKVTIIGSGPAAHTAAIYLARAEIKPILYEGMMANGIAAGGQLTTTTEIENFPGFPDGLTGSELMDRMREQSTKFGTEI 101 (338)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBTTBCTTCGGGGSSEECCSTTCTTCEEHHHHHHHHHHHHHHTTCEE
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCCEEEEecCCCCCCCcCcccccchhhcccCCCcccCCHHHHHHHHHHHHHHcCCEE
Confidence 4689999999999999999999999999999843 11 1122 2467788888999999999
Q ss_pred EcCcccEEEEEcCCceEEEEE---CCCeEEEeeEEEEecCcCCCCC
Q 008860 304 HTEESPQAILKSTDGSLSVKT---NKGTVDGFSHVMFATGRRPNTK 346 (551)
Q Consensus 304 ~~~~~v~~i~~~~~~~~~V~~---~~G~~i~~d~vi~a~G~~p~~~ 346 (551)
+.++ |.+++.+++. +.+.+ .++..+.+|.+|+|+|..|...
T Consensus 102 ~~~~-v~~i~~~~~~-~~v~~~~~~~~~~~~~d~vvlAtG~~~~~~ 145 (338)
T 3itj_A 102 ITET-VSKVDLSSKP-FKLWTEFNEDAEPVTTDAIILATGASAKRM 145 (338)
T ss_dssp ECSC-EEEEECSSSS-EEEEETTCSSSCCEEEEEEEECCCEEECCC
T ss_pred EEeE-EEEEEEcCCE-EEEEEEecCCCcEEEeCEEEECcCCCcCCC
Confidence 9997 9999877665 66776 4677899999999999988754
|
| >2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A* | Back alignment and structure |
|---|
Probab=98.49 E-value=1.1e-06 Score=86.65 Aligned_cols=98 Identities=20% Similarity=0.203 Sum_probs=79.8
Q ss_pred eEEEEcCcHHHHHHHHHHHhCCC-eEEEEeecCc-----------cCCCC-----CHHHHHHHHHHHHhcCcEEEcCccc
Q 008860 247 KIAIVGGGYIALEFAGIFSGLTS-EVHVFIRQKK-----------VLRGF-----DEDIRDFVAEQMSLRGIEFHTEESP 309 (551)
Q Consensus 247 ~vvViG~G~~g~e~a~~l~~~g~-~Vtlv~~~~~-----------~l~~~-----~~~~~~~l~~~l~~~Gv~i~~~~~v 309 (551)
+|+|||+|+.|+.+|..|++.|. +|+++++... ..+.+ ..++.+.+.+.+++.|++++. ++|
T Consensus 3 dvvIIG~G~aGl~aA~~l~~~g~~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~-~~v 81 (311)
T 2q0l_A 3 DCAIIGGGPAGLSAGLYATRGGVKNAVLFEKGMPGGQITGSSEIENYPGVKEVVSGLDFMQPWQEQCFRFGLKHEM-TAV 81 (311)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCSSEEEECSSSTTCGGGGCSCBCCSTTCCSCBCHHHHHHHHHHHHHTTSCEEEC-SCE
T ss_pred eEEEECccHHHHHHHHHHHHCCCCcEEEEcCCCCCcccccccccccCCCCcccCCHHHHHHHHHHHHHHcCCEEEE-EEE
Confidence 68999999999999999999999 9999998521 01222 245667778888889999998 689
Q ss_pred EEEEEcCCceEEEEECCCeEEEeeEEEEecCcCCCCC
Q 008860 310 QAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNTK 346 (551)
Q Consensus 310 ~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~~~ 346 (551)
.+++.+++. +.|.+.+|+++.+|.||+|+|..|...
T Consensus 82 ~~i~~~~~~-~~v~~~~g~~~~~~~vv~AtG~~~~~~ 117 (311)
T 2q0l_A 82 QRVSKKDSH-FVILAEDGKTFEAKSVIIATGGSPKRT 117 (311)
T ss_dssp EEEEEETTE-EEEEETTSCEEEEEEEEECCCEEECCC
T ss_pred EEEEEcCCE-EEEEEcCCCEEECCEEEECCCCCCCCC
Confidence 999876654 678788888899999999999988654
|
| >3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.40A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.49 E-value=8.4e-07 Score=91.10 Aligned_cols=57 Identities=11% Similarity=0.045 Sum_probs=42.4
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCcccE---------EEEEcCCceEEEEECCCeEEEeeEEEEecCcCC
Q 008860 285 DEDIRDFVAEQMSLRGIEFHTEESPQ---------AILKSTDGSLSVKTNKGTVDGFSHVMFATGRRP 343 (551)
Q Consensus 285 ~~~~~~~l~~~l~~~Gv~i~~~~~v~---------~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p 343 (551)
...+...+.+.+++.|++++.+++|+ ++..++++ +.|.+.+| ++.+|.||+|+|...
T Consensus 171 ~~~l~~~L~~~~~~~Gv~i~~~~~v~~~~g~~~~~~i~~~~~~-v~v~~~~g-~i~a~~VV~A~G~~s 236 (405)
T 3c4n_A 171 PGSLALLAAQQAIGQGAGLLLNTRAELVPGGVRLHRLTVTNTH-QIVVHETR-QIRAGVIIVAAGAAG 236 (405)
T ss_dssp HHHHHHHHHHHHHTTTCEEECSCEEEEETTEEEEECBCC--------CBCCE-EEEEEEEEECCGGGH
T ss_pred HHHHHHHHHHHHHHCCCEEEcCCEEEeccccccccceEeeCCe-EEEEECCc-EEECCEEEECCCccH
Confidence 34577888888999999999999999 88765555 56767666 699999999999865
|
| >2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase type II family, thiazole synthase, mitochondria DNA repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} PDB: 3fpz_A* | Back alignment and structure |
|---|
Probab=98.47 E-value=1.3e-06 Score=85.96 Aligned_cols=33 Identities=33% Similarity=0.374 Sum_probs=30.6
Q ss_pred CCccEEEECCChHHHHHHHHHHhC--CCcEEEEcc
Q 008860 71 YDFDLFTIGAGSGGVRASRFAANF--GASVAICEL 103 (551)
Q Consensus 71 ~~~dVvIIGgG~aGl~aA~~l~~~--G~~V~liE~ 103 (551)
.++||+|||||++|+++|..|++. |++|+|+|+
T Consensus 64 ~~~dv~IiG~G~aGl~aA~~la~~~~g~~V~v~e~ 98 (326)
T 2gjc_A 64 AVSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIES 98 (326)
T ss_dssp TEESEEEECCSHHHHHHHHHHHHHCTTSCEEEECS
T ss_pred CcCCEEEECccHHHHHHHHHHHhcCCCCeEEEEec
Confidence 358999999999999999999997 999999993
|
| >2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical bundle, sandwiched sheets, structural genomics; HET: TRP FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A* 2ar8_A* 2ard_A* 2jkc_A* | Back alignment and structure |
|---|
Probab=98.46 E-value=9.3e-07 Score=94.32 Aligned_cols=33 Identities=18% Similarity=0.301 Sum_probs=30.9
Q ss_pred CCccEEEECCChHHHHHHHHHHh---CCCcEEEEcc
Q 008860 71 YDFDLFTIGAGSGGVRASRFAAN---FGASVAICEL 103 (551)
Q Consensus 71 ~~~dVvIIGgG~aGl~aA~~l~~---~G~~V~liE~ 103 (551)
..+||+|||||++|+++|+.|++ .|.+|+|||+
T Consensus 4 ~~~dVvIVGgG~aGl~aA~~La~~~~~G~~V~liE~ 39 (538)
T 2aqj_A 4 PIKNIVIVGGGTAGWMAASYLVRALQQQANITLIES 39 (538)
T ss_dssp BCCEEEEECCSHHHHHHHHHHHHHCCSSCEEEEEEC
T ss_pred CCCeEEEECCCHHHHHHHHHHHhhcCCCCEEEEECC
Confidence 35899999999999999999999 9999999993
|
| >2h88_A Succinate dehydrogenase flavoprotein subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_A* 1yq3_A* 2fbw_A* 2h89_A* 2wqy_A* 1zoy_A* 1zp0_A* 3abv_A* 3ae1_A* 3ae2_A* 3ae3_A* 3ae4_A* 3ae5_A* 3ae6_A* 3ae7_A* 3ae8_A* 3ae9_A* 3aea_A* 3aeb_A* 3aec_A* ... | Back alignment and structure |
|---|
Probab=98.45 E-value=4.5e-06 Score=89.97 Aligned_cols=59 Identities=14% Similarity=0.066 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEE---CCCe--EEEeeEEEEecCcCCC
Q 008860 286 EDIRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKT---NKGT--VDGFSHVMFATGRRPN 344 (551)
Q Consensus 286 ~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~---~~G~--~i~~d~vi~a~G~~p~ 344 (551)
..+...+.+.+++.||+++.++.|.++..+++.+..|.. .+|+ .+.++.||+|+|....
T Consensus 155 ~~l~~~L~~~~~~~gv~i~~~~~v~~Li~~~g~v~Gv~~~~~~~G~~~~i~A~~VVlATGG~~~ 218 (621)
T 2h88_A 155 HSLLHTLYGRSLRYDTSYFVEYFALDLLMENGECRGVIALCIEDGTIHRFRAKNTVIATGGYGR 218 (621)
T ss_dssp HHHHHHHHHHHTTSCCEEEETEEEEEEEEETTEEEEEEEEETTTCCEEEEEEEEEEECCCCCGG
T ss_pred HHHHHHHHHHHHhCCCEEEEceEEEEEEEECCEEEEEEEEEcCCCcEEEEEcCeEEECCCcccc
Confidence 356677777888899999999999999876554444544 4675 6899999999997653
|
| >2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1 | Back alignment and structure |
|---|
Probab=98.45 E-value=1.2e-06 Score=89.57 Aligned_cols=98 Identities=18% Similarity=0.165 Sum_probs=79.7
Q ss_pred CeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccC--------------CC----------------------------
Q 008860 246 EKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVL--------------RG---------------------------- 283 (551)
Q Consensus 246 ~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l--------------~~---------------------------- 283 (551)
.+|+|||+|+.|+.+|..+++.|.+|+++++.+.+. ..
T Consensus 5 ~dViIIGgG~aGl~aA~~la~~G~~V~vlEk~~~~g~~~~~sggg~cn~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 84 (401)
T 2gqf_A 5 SENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKKIGRKILMSGGGFCNFTNLEVTPAHYLSQNPHFVKSALARYTNWDFI 84 (401)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHGGGGTCCCEESSCCGGGEECSCTTSTHHHHHHSCHHHHH
T ss_pred CCEEEECCcHHHHHHHHHHHhCCCCEEEEeCCCCCchhcEEcCCCeEEccCCccCHHHhccCCHHHHHHHHHhCCHHHHH
Confidence 369999999999999999999999999999876430 00
Q ss_pred ----------------------CCHHHHHHHHHHHHhcCcEEEcCcccEEEEEc----CCceEEEEECCCeEEEeeEEEE
Q 008860 284 ----------------------FDEDIRDFVAEQMSLRGIEFHTEESPQAILKS----TDGSLSVKTNKGTVDGFSHVMF 337 (551)
Q Consensus 284 ----------------------~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~----~~~~~~V~~~~G~~i~~d~vi~ 337 (551)
...++.+.+.+.+++.|++++++++|+++..+ +++ +.|.+.+| ++.+|.||+
T Consensus 85 ~~~~~~Gi~~~~~~~g~~~p~~~~~~l~~~L~~~~~~~Gv~i~~~~~v~~i~~~~~g~~~~-~~v~~~~g-~i~ad~VVl 162 (401)
T 2gqf_A 85 SLVAEQGITYHEKELGQLFCDEGAEQIVEMLKSECDKYGAKILLRSEVSQVERIQNDEKVR-FVLQVNST-QWQCKNLIV 162 (401)
T ss_dssp HHHHHTTCCEEECSTTEEEETTCTHHHHHHHHHHHHHHTCEEECSCCEEEEEECCSCSSCC-EEEEETTE-EEEESEEEE
T ss_pred HHHHhCCCceEECcCCEEccCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEcccCcCCCe-EEEEECCC-EEECCEEEE
Confidence 12344566778888899999999999999876 444 77888777 699999999
Q ss_pred ecCcCCCC
Q 008860 338 ATGRRPNT 345 (551)
Q Consensus 338 a~G~~p~~ 345 (551)
|+|..+..
T Consensus 163 AtG~~s~p 170 (401)
T 2gqf_A 163 ATGGLSMP 170 (401)
T ss_dssp CCCCSSCG
T ss_pred CCCCccCC
Confidence 99998854
|
| >3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=98.44 E-value=5.6e-07 Score=91.65 Aligned_cols=99 Identities=19% Similarity=0.214 Sum_probs=78.2
Q ss_pred CeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccC---CCCC---------HHHHHHHHHHHHhcCcEEEcCcccEEEE
Q 008860 246 EKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVL---RGFD---------EDIRDFVAEQMSLRGIEFHTEESPQAIL 313 (551)
Q Consensus 246 ~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l---~~~~---------~~~~~~l~~~l~~~Gv~i~~~~~v~~i~ 313 (551)
.+|+|||+|+.|+.+|..|...+.+|+++++.+.+. +.+. .++.....+.+++.||+++++++|++++
T Consensus 10 ~~~vIvGgG~AGl~aA~~L~~~~~~itlie~~~~~~y~~~~l~~~l~g~~~~~~l~~~~~~~~~~~~i~~~~~~~V~~id 89 (385)
T 3klj_A 10 TKILILGAGPAGFSAAKAALGKCDDITMINSEKYLPYYRPRLNEIIAKNKSIDDILIKKNDWYEKNNIKVITSEFATSID 89 (385)
T ss_dssp CSEEEECCSHHHHHHHHHHTTTCSCEEEECSSSSCCBCGGGHHHHHHSCCCGGGTBSSCHHHHHHTTCEEECSCCEEEEE
T ss_pred CCEEEEcCcHHHHHHHHHHhCCCCEEEEEECCCCCCcccChhhHHHcCCCCHHHccCCCHHHHHHCCCEEEeCCEEEEEE
Confidence 479999999999999999988889999999877531 1011 1122224566788999999999999998
Q ss_pred EcCCceEEEEECCCeEEEeeEEEEecCcCCCCCC
Q 008860 314 KSTDGSLSVKTNKGTVDGFSHVMFATGRRPNTKN 347 (551)
Q Consensus 314 ~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~~~~ 347 (551)
.+.. .|++.+|+++.+|.+|+|||.+|....
T Consensus 90 ~~~~---~v~~~~g~~~~yd~lvlAtG~~p~~p~ 120 (385)
T 3klj_A 90 PNNK---LVTLKSGEKIKYEKLIIASGSIANKIK 120 (385)
T ss_dssp TTTT---EEEETTSCEEECSEEEECCCEEECCCC
T ss_pred CCCC---EEEECCCCEEECCEEEEecCCCcCCCC
Confidence 6653 478899999999999999999887643
|
| >3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A* | Back alignment and structure |
|---|
Probab=98.44 E-value=1.5e-06 Score=88.37 Aligned_cols=32 Identities=22% Similarity=0.151 Sum_probs=30.6
Q ss_pred CccEEEECCChHHHHHHHHHHhCCCcEEEEcc
Q 008860 72 DFDLFTIGAGSGGVRASRFAANFGASVAICEL 103 (551)
Q Consensus 72 ~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~ 103 (551)
.+||+|||||++|+++|..|++.|.+|+|||+
T Consensus 11 ~~dVvIVGaG~aGl~~A~~L~~~G~~v~viE~ 42 (379)
T 3alj_A 11 TRRAEVAGGGFAGLTAAIALKQNGWDVRLHEK 42 (379)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECS
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCCEEEEec
Confidence 58999999999999999999999999999993
|
| >2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A {Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A* | Back alignment and structure |
|---|
Probab=98.43 E-value=1e-06 Score=93.11 Aligned_cols=59 Identities=17% Similarity=0.093 Sum_probs=47.8
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEE---CCCe--EEEeeEEEEecCcCCC
Q 008860 285 DEDIRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKT---NKGT--VDGFSHVMFATGRRPN 344 (551)
Q Consensus 285 ~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~---~~G~--~i~~d~vi~a~G~~p~ 344 (551)
+..+...+.+.+++.|++++.+++|+++..+++ ...|.+ .+|+ ++.+|.||+|+|....
T Consensus 148 ~~~l~~~l~~~a~~~Gv~i~~~~~V~~l~~~~~-~~~V~~~d~~~G~~~~i~A~~VV~AtG~~s~ 211 (501)
T 2qcu_A 148 DARLVLANAQMVVRKGGEVLTRTRATSARRENG-LWIVEAEDIDTGKKYSWQARGLVNATGPWVK 211 (501)
T ss_dssp HHHHHHHHHHHHHHTTCEEECSEEEEEEEEETT-EEEEEEEETTTCCEEEEEESCEEECCGGGHH
T ss_pred HHHHHHHHHHHHHHcCCEEEcCcEEEEEEEeCC-EEEEEEEECCCCCEEEEECCEEEECCChhHH
Confidence 456778888889999999999999999987663 366766 3565 6899999999998653
|
| >1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 | Back alignment and structure |
|---|
Probab=98.41 E-value=1.3e-06 Score=85.87 Aligned_cols=100 Identities=14% Similarity=0.147 Sum_probs=79.5
Q ss_pred eEEEEcCcHHHHHHHHHHHhCCCeEEEEeecC--ccC--------CC----CCHHHHHHHHHHHHhcCcEEEcCcccEEE
Q 008860 247 KIAIVGGGYIALEFAGIFSGLTSEVHVFIRQK--KVL--------RG----FDEDIRDFVAEQMSLRGIEFHTEESPQAI 312 (551)
Q Consensus 247 ~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~--~~l--------~~----~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i 312 (551)
+|+|||+|+.|+.+|..|++.|.+|+++++.. .+. .. ..+++.+.+.+.+++.|++++.+++|..+
T Consensus 3 dvvIIG~G~aGl~aA~~l~~~g~~v~li~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~i 82 (310)
T 1fl2_A 3 DVLIVGSGPAGAAAAIYSARKGIRTGLMGERFGGQILDTVDIENYISVPKTEGQKLAGALKVHVDEYDVDVIDSQSASKL 82 (310)
T ss_dssp EEEEECCSHHHHHHHHHHHTTTCCEEEECSSTTGGGGGCCEECCBTTBSSEEHHHHHHHHHHHHHTSCEEEECSCCEEEE
T ss_pred CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCceeccccccccccCcCCCCHHHHHHHHHHHHHHcCCeEEccCEEEEE
Confidence 68999999999999999999999999997531 110 00 12466777888888899999999999999
Q ss_pred EEcCC--ceEEEEECCCeEEEeeEEEEecCcCCCCC
Q 008860 313 LKSTD--GSLSVKTNKGTVDGFSHVMFATGRRPNTK 346 (551)
Q Consensus 313 ~~~~~--~~~~V~~~~G~~i~~d~vi~a~G~~p~~~ 346 (551)
..+.+ +...|.+.+|+++.+|.+|+|+|..|...
T Consensus 83 ~~~~~~~~~~~v~~~~g~~~~~~~lv~AtG~~~~~~ 118 (310)
T 1fl2_A 83 IPAAVEGGLHQIETASGAVLKARSIIVATGAKWRNM 118 (310)
T ss_dssp ECCSSTTCCEEEEETTSCEEEEEEEEECCCEEECCC
T ss_pred EecccCCceEEEEECCCCEEEeCEEEECcCCCcCCC
Confidence 76432 23778888898899999999999987653
|
| >3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=98.41 E-value=2.7e-06 Score=85.92 Aligned_cols=98 Identities=13% Similarity=0.188 Sum_probs=77.8
Q ss_pred CeEEEEcCcHHHHHHHHHHHhCCC-eEEEEeecC------c------cC-CC----------------------------
Q 008860 246 EKIAIVGGGYIALEFAGIFSGLTS-EVHVFIRQK------K------VL-RG---------------------------- 283 (551)
Q Consensus 246 ~~vvViG~G~~g~e~a~~l~~~g~-~Vtlv~~~~------~------~l-~~---------------------------- 283 (551)
.+|+|||+|+.|+.+|..|++.|. +|+++++.+ . ++ +.
T Consensus 5 ~~vvIIGaG~aGl~aA~~l~~~g~~~v~lie~~~~Gg~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 84 (369)
T 3d1c_A 5 HKVAIIGAGAAGIGMAITLKDFGITDVIILEKGTVGHSFKHWPKSTRTITPSFTSNGFGMPDMNAISMDTSPAFTFNEEH 84 (369)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCCEEEECSSSTTHHHHTSCTTCBCSSCCCCCGGGTCCCTTCSSTTCCHHHHHCCSS
T ss_pred CcEEEECcCHHHHHHHHHHHHcCCCcEEEEecCCCCCccccCcccccccCcchhcccCCchhhhhccccccccccccccC
Confidence 479999999999999999999999 999999875 0 00 00
Q ss_pred CC-HHHHHHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCcCCCC
Q 008860 284 FD-EDIRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNT 345 (551)
Q Consensus 284 ~~-~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~~ 345 (551)
.. .++...+.+.+++.|++++++++|.+++.++++ +.|.+.+| ++.+|.||+|+|..+..
T Consensus 85 ~~~~~~~~~l~~~~~~~gv~i~~~~~v~~i~~~~~~-~~v~~~~g-~~~~d~vVlAtG~~~~p 145 (369)
T 3d1c_A 85 ISGETYAEYLQVVANHYELNIFENTVVTNISADDAY-YTIATTTE-TYHADYIFVATGDYNFP 145 (369)
T ss_dssp CBHHHHHHHHHHHHHHTTCEEECSCCEEEEEECSSS-EEEEESSC-CEEEEEEEECCCSTTSB
T ss_pred CCHHHHHHHHHHHHHHcCCeEEeCCEEEEEEECCCe-EEEEeCCC-EEEeCEEEECCCCCCcc
Confidence 00 234556677778899999999999999887655 77888777 49999999999998653
|
| >3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A* | Back alignment and structure |
|---|
Probab=98.40 E-value=1.8e-06 Score=87.76 Aligned_cols=97 Identities=14% Similarity=0.181 Sum_probs=79.9
Q ss_pred CCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCCC-----------------------------------------
Q 008860 245 PEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRG----------------------------------------- 283 (551)
Q Consensus 245 ~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~~----------------------------------------- 283 (551)
..+|+|||+|+.|+.+|..|++.|.+|+++++.+.+...
T Consensus 11 ~~dVvIVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~g~~ 90 (379)
T 3alj_A 11 TRRAEVAGGGFAGLTAAIALKQNGWDVRLHEKSSELRAFGAGIYLWHNGLRVLEGLGALDDVLQGSHTPPTYETWMHNKS 90 (379)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSCCCCSSEEEEEHHHHHHHHHTTCHHHHHTTCBCCSCEEEEETTEE
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCCCCceEEeCccHHHHHHHcCCHHHHHhhCCCccceEEEeCCce
Confidence 358999999999999999999999999999987654210
Q ss_pred ---CC-----------HHHHHHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCcCCCC
Q 008860 284 ---FD-----------EDIRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNT 345 (551)
Q Consensus 284 ---~~-----------~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~~ 345 (551)
++ ..+.+.+.+.+++.|++++++++|++++. ++ .|++.+|+++.+|.||.|+|..+..
T Consensus 91 ~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~gv~i~~~~~v~~i~~--~~--~v~~~~g~~~~ad~vV~AdG~~s~v 162 (379)
T 3alj_A 91 VSKETFNGLPWRIMTRSHLHDALVNRARALGVDISVNSEAVAADP--VG--RLTLQTGEVLEADLIVGADGVGSKV 162 (379)
T ss_dssp EEEECGGGCCEEEEEHHHHHHHHHHHHHHTTCEEESSCCEEEEET--TT--EEEETTSCEEECSEEEECCCTTCHH
T ss_pred eeeccCCCCceEEECHHHHHHHHHHHHHhcCCEEEeCCEEEEEEe--CC--EEEECCCCEEEcCEEEECCCccHHH
Confidence 00 34466677888889999999999999986 33 6788899899999999999998754
|
| >2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=98.39 E-value=1.9e-06 Score=85.54 Aligned_cols=100 Identities=16% Similarity=0.164 Sum_probs=79.0
Q ss_pred CeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCc-----------cCCCC-----CHHHHHHHHHHHHhcCcEEEcCccc
Q 008860 246 EKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKK-----------VLRGF-----DEDIRDFVAEQMSLRGIEFHTEESP 309 (551)
Q Consensus 246 ~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~-----------~l~~~-----~~~~~~~l~~~l~~~Gv~i~~~~~v 309 (551)
.+|+|||+|+.|+.+|..|++.|.+|+++++... ..+.+ ..++.+.+.+.+++.|++++. .++
T Consensus 9 ~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~~~-~~v 87 (325)
T 2q7v_A 9 YDVVIIGGGPAGLTAAIYTGRAQLSTLILEKGMPGGQIAWSEEVENFPGFPEPIAGMELAQRMHQQAEKFGAKVEM-DEV 87 (325)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCTTGGGGGCSCBCCSTTCSSCBCHHHHHHHHHHHHHHTTCEEEE-CCE
T ss_pred CCEEEECCCHHHHHHHHHHHHcCCcEEEEeCCCCCcccccccccccCCCCCCCCCHHHHHHHHHHHHHHcCCEEEe-eeE
Confidence 4799999999999999999999999999998721 01122 235667778888899999987 589
Q ss_pred EEEEEc--CCceEEEEECCCeEEEeeEEEEecCcCCCCC
Q 008860 310 QAILKS--TDGSLSVKTNKGTVDGFSHVMFATGRRPNTK 346 (551)
Q Consensus 310 ~~i~~~--~~~~~~V~~~~G~~i~~d~vi~a~G~~p~~~ 346 (551)
.+++.+ ++..+.|.+.+|+++.+|.||+|+|..|...
T Consensus 88 ~~i~~~~~~~~~~~v~~~~g~~~~~~~vv~AtG~~~~~~ 126 (325)
T 2q7v_A 88 QGVQHDATSHPYPFTVRGYNGEYRAKAVILATGADPRKL 126 (325)
T ss_dssp EEEEECTTSSSCCEEEEESSCEEEEEEEEECCCEEECCC
T ss_pred EEEEeccCCCceEEEEECCCCEEEeCEEEECcCCCcCCC
Confidence 999876 3322456777888899999999999987654
|
| >1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A* | Back alignment and structure |
|---|
Probab=98.39 E-value=1.2e-06 Score=87.30 Aligned_cols=98 Identities=19% Similarity=0.149 Sum_probs=78.7
Q ss_pred CeEEEEcCcHHHHHHHHHHHhCCCeEEEEee----cCcc------------CCCC-----CHHHHHHHHHHHHhcCcEEE
Q 008860 246 EKIAIVGGGYIALEFAGIFSGLTSEVHVFIR----QKKV------------LRGF-----DEDIRDFVAEQMSLRGIEFH 304 (551)
Q Consensus 246 ~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~----~~~~------------l~~~-----~~~~~~~l~~~l~~~Gv~i~ 304 (551)
.+|+|||+|+.|+.+|..|++.|.+|+++++ ...+ .+.+ ..++.+.+.+.+++.|++++
T Consensus 9 ~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~~ 88 (333)
T 1vdc_A 9 TRLCIVGSGPAAHTAAIYAARAELKPLLFEGWMANDIAPGGQLTTTTDVENFPGFPEGILGVELTDKFRKQSERFGTTIF 88 (333)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBTTBCTTCGGGGCSEECCSTTCTTCEEHHHHHHHHHHHHHHTTCEEE
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCeEEEEeccCccccCCCceeeeccccccCCCCccCCCHHHHHHHHHHHHHHCCCEEE
Confidence 4799999999999999999999999999998 2211 1111 23566777888889999999
Q ss_pred cCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCcCCCCC
Q 008860 305 TEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNTK 346 (551)
Q Consensus 305 ~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~~~ 346 (551)
.++ +..++.+++. +.|.+ +|+++.+|.||+|+|.+|...
T Consensus 89 ~~~-v~~i~~~~~~-~~v~~-~~~~~~~~~vv~A~G~~~~~~ 127 (333)
T 1vdc_A 89 TET-VTKVDFSSKP-FKLFT-DSKAILADAVILAIGAVAKRL 127 (333)
T ss_dssp CCC-CCEEECSSSS-EEEEC-SSEEEEEEEEEECCCEEECCC
T ss_pred EeE-EEEEEEcCCE-EEEEE-CCcEEEcCEEEECCCCCcCCC
Confidence 986 9999876655 66777 778899999999999987654
|
| >2pyx_A Tryptophan halogenase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative biosynthetic protein; HET: MSE TLA PG4; 1.50A {Shewanella frigidimarina} | Back alignment and structure |
|---|
Probab=98.39 E-value=9.5e-06 Score=86.21 Aligned_cols=58 Identities=12% Similarity=0.143 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHh-cCcEEEcCcccEEEEEcCCc-eEEEEECCCeEEEeeEEEEecCcCCCC
Q 008860 287 DIRDFVAEQMSL-RGIEFHTEESPQAILKSTDG-SLSVKTNKGTVDGFSHVMFATGRRPNT 345 (551)
Q Consensus 287 ~~~~~l~~~l~~-~Gv~i~~~~~v~~i~~~~~~-~~~V~~~~G~~i~~d~vi~a~G~~p~~ 345 (551)
.+.+.+.+.+++ .|++++.+ +|++++.++++ .+.|.+.+|+++.+|.||.|+|..+..
T Consensus 176 ~l~~~L~~~a~~~~Gv~i~~~-~v~~i~~~~~g~~~~v~~~~g~~i~ad~vV~AdG~~S~~ 235 (526)
T 2pyx_A 176 KFSQLLTEHCTQKLGVTHIRD-HVSQIINNQHGDIEKLITKQNGEISGQLFIDCTGAKSLL 235 (526)
T ss_dssp HHHHHHHHHHHHTSCCEEEEC-CEEEEEECTTSCEEEEEESSSCEEECSEEEECSGGGCCC
T ss_pred HHHHHHHHHHHhcCCCEEEEe-EEEEEEecCCCcEEEEEECCCCEEEcCEEEECCCcchHH
Confidence 456777888888 89999999 69999876554 356888887789999999999998764
|
| >2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=98.38 E-value=1.6e-06 Score=88.66 Aligned_cols=99 Identities=20% Similarity=0.162 Sum_probs=80.3
Q ss_pred CeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCC-------------------------------------------
Q 008860 246 EKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLR------------------------------------------- 282 (551)
Q Consensus 246 ~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~------------------------------------------- 282 (551)
.+|+|||+|..|+.+|..|++.|.+|+++++.+.+..
T Consensus 7 ~dVvIVGaG~aGl~~A~~L~~~G~~V~viE~~~~~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~g~~ 86 (399)
T 2x3n_A 7 IDVLINGCGIGGAMLAYLLGRQGHRVVVVEQARRERAINGADLLKPAGIRVVEAAGLLAEVTRRGGRVRHELEVYHDGEL 86 (399)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCCC---CCCCEECHHHHHHHHHTTCHHHHHHTTCEEECEEEEEETTEE
T ss_pred CCEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCCCCccCceeeECchHHHHHHHcCcHHHHHHhCCCcceeEEEeCCCCE
Confidence 4799999999999999999999999999998653300
Q ss_pred --C--------------C-CHHHHHHHHHHHHhc-CcEEEcCcccEEEEEcCCceE--EEEECCCeEEEeeEEEEecCcC
Q 008860 283 --G--------------F-DEDIRDFVAEQMSLR-GIEFHTEESPQAILKSTDGSL--SVKTNKGTVDGFSHVMFATGRR 342 (551)
Q Consensus 283 --~--------------~-~~~~~~~l~~~l~~~-Gv~i~~~~~v~~i~~~~~~~~--~V~~~~G~~i~~d~vi~a~G~~ 342 (551)
. . ...+.+.+.+.+++. |++++++++|++++.++++ + .|++.+|+++.+|.||.|.|..
T Consensus 87 ~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~-v~g~v~~~~g~~~~ad~vV~AdG~~ 165 (399)
T 2x3n_A 87 LRYFNYSSVDARGYFILMPCESLRRLVLEKIDGEATVEMLFETRIEAVQRDERH-AIDQVRLNDGRVLRPRVVVGADGIA 165 (399)
T ss_dssp EEEEETTSSCGGGCEEECCHHHHHHHHHHHHTTCTTEEEECSCCEEEEEECTTS-CEEEEEETTSCEEEEEEEEECCCTT
T ss_pred EEecchHHhcccCccccccHHHHHHHHHHHhhhcCCcEEEcCCEEEEEEEcCCc-eEEEEEECCCCEEECCEEEECCCCC
Confidence 0 0 013445566777777 9999999999999987776 5 7889999889999999999997
Q ss_pred CCC
Q 008860 343 PNT 345 (551)
Q Consensus 343 p~~ 345 (551)
+..
T Consensus 166 s~v 168 (399)
T 2x3n_A 166 SYV 168 (399)
T ss_dssp CHH
T ss_pred hHH
Confidence 753
|
| >3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A* | Back alignment and structure |
|---|
Probab=98.37 E-value=3.4e-07 Score=95.01 Aligned_cols=98 Identities=19% Similarity=0.239 Sum_probs=78.0
Q ss_pred CeEEEEcCcHHHHHHHHHHHh---CCCeEEEEeecCccC--CC---------CCHHHHHHHHHHHHhcCcEEEcCcccEE
Q 008860 246 EKIAIVGGGYIALEFAGIFSG---LTSEVHVFIRQKKVL--RG---------FDEDIRDFVAEQMSLRGIEFHTEESPQA 311 (551)
Q Consensus 246 ~~vvViG~G~~g~e~a~~l~~---~g~~Vtlv~~~~~~l--~~---------~~~~~~~~l~~~l~~~Gv~i~~~~~v~~ 311 (551)
++|+|||+|+.|+.+|..|++ .|.+|+++++.+.+. +. ...++...+.+.+++.||+++. .+|+.
T Consensus 5 ~~vvIIGgG~aGl~aA~~L~~~~~~g~~Vtlie~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~gv~~~~-~~v~~ 83 (437)
T 3sx6_A 5 AHVVILGAGTGGMPAAYEMKEALGSGHEVTLISANDYFQFVPSNPWVGVGWKERDDIAFPIRHYVERKGIHFIA-QSAEQ 83 (437)
T ss_dssp CEEEEECCSTTHHHHHHHHHHHHGGGSEEEEECSSSEEECGGGHHHHHHTSSCHHHHEEECHHHHHTTTCEEEC-SCEEE
T ss_pred CcEEEECCcHHHHHHHHHHhccCCCcCEEEEEeCCCCCcccCCccccccCccCHHHHHHHHHHHHHHCCCEEEE-eEEEE
Confidence 689999999999999999999 799999999987642 10 1122333356778889999985 59999
Q ss_pred EEEcCCceEEEEECCCeEEEeeEEEEecCcCCCCCC
Q 008860 312 ILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNTKN 347 (551)
Q Consensus 312 i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~~~~ 347 (551)
++.+++ .|.+.+|+++.+|.+|+|+|.+|+...
T Consensus 84 id~~~~---~V~~~~g~~i~~d~lviAtG~~~~~~~ 116 (437)
T 3sx6_A 84 IDAEAQ---NITLADGNTVHYDYLMIATGPKLAFEN 116 (437)
T ss_dssp EETTTT---EEEETTSCEEECSEEEECCCCEECGGG
T ss_pred EEcCCC---EEEECCCCEEECCEEEECCCCCcCccc
Confidence 976554 478889988999999999999987643
|
| >2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protei; HET: TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A* 2wes_A* | Back alignment and structure |
|---|
Probab=98.37 E-value=5.9e-06 Score=87.51 Aligned_cols=59 Identities=17% Similarity=0.171 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHhcCcEEEcCcccEEEEEcCCc-eEEEEECCCeEEEeeEEEEecCcCCCC
Q 008860 286 EDIRDFVAEQMSLRGIEFHTEESPQAILKSTDG-SLSVKTNKGTVDGFSHVMFATGRRPNT 345 (551)
Q Consensus 286 ~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~-~~~V~~~~G~~i~~d~vi~a~G~~p~~ 345 (551)
..+.+.+.+.+++.|++++.+ +|+++..++++ .+.|.+.+|+++.+|.||.|+|.....
T Consensus 173 ~~l~~~L~~~a~~~gv~~~~~-~v~~i~~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~S~~ 232 (511)
T 2weu_A 173 DEVARYLSEYAIARGVRHVVD-DVQHVGQDERGWISGVHTKQHGEISGDLFVDCTGFRGLL 232 (511)
T ss_dssp HHHHHHHHHHHHHTTCEEEEC-CEEEEEECTTSCEEEEEESSSCEEECSEEEECCGGGCCC
T ss_pred HHHHHHHHHHHHHCCCEEEEC-eEeEEEEcCCCCEEEEEECCCCEEEcCEEEECCCcchHH
Confidence 356677888888899999999 99999875544 467888899889999999999997654
|
| >4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C* | Back alignment and structure |
|---|
Probab=98.36 E-value=3.1e-06 Score=83.15 Aligned_cols=101 Identities=17% Similarity=0.220 Sum_probs=74.9
Q ss_pred eEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCc----------cC--CC-CCHHHHHHHHHHHHhcCcEEEcCcccEEEE
Q 008860 247 KIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKK----------VL--RG-FDEDIRDFVAEQMSLRGIEFHTEESPQAIL 313 (551)
Q Consensus 247 ~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~----------~l--~~-~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~ 313 (551)
.|+|||+|+.|+.+|..+++.|.+|+++++... +. +. ..+++.+...+.+.+.+...+....+..+.
T Consensus 8 DVvIIGaGpAGlsAA~~lar~g~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (304)
T 4fk1_A 8 DCAVIGAGPAGLNASLVLGRARKQIALFDNNTNRNRVTQNSHGFITRDGIKPEEFKEIGLNEVMKYPSVHYYEKTVVMIT 87 (304)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEEECSCCGGGGSSCBCCSTTCTTBCHHHHHHHHHHHHTTSTTEEEEECCEEEEE
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCCeeeeecCCccCCCCCCHHHHHHHHHHHHHhcCCEEEEeeEEEEee
Confidence 589999999999999999999999999997531 11 01 124455555555666554444555677776
Q ss_pred EcCCceEEEEECCCeEEEeeEEEEecCcCCCCCC
Q 008860 314 KSTDGSLSVKTNKGTVDGFSHVMFATGRRPNTKN 347 (551)
Q Consensus 314 ~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~~~~ 347 (551)
..+++...+.+.+|+++.+|.||+|||.+|....
T Consensus 88 ~~~~~~~~v~~~~g~~~~a~~liiATGs~p~~p~ 121 (304)
T 4fk1_A 88 KQSTGLFEIVTKDHTKYLAERVLLATGMQEEFPS 121 (304)
T ss_dssp ECTTSCEEEEETTCCEEEEEEEEECCCCEEECCS
T ss_pred ecCCCcEEEEECCCCEEEeCEEEEccCCcccccc
Confidence 6555557889999999999999999999886543
|
| >4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A* | Back alignment and structure |
|---|
Probab=98.35 E-value=2.7e-06 Score=90.68 Aligned_cols=101 Identities=17% Similarity=0.236 Sum_probs=81.6
Q ss_pred CeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccC--------C-------------CC----------------CHHH
Q 008860 246 EKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVL--------R-------------GF----------------DEDI 288 (551)
Q Consensus 246 ~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l--------~-------------~~----------------~~~~ 288 (551)
.+|+|||+|+.|+.+|..|++.|.+|+++++.+.+. + .+ .+++
T Consensus 22 ~dVvIIGaG~aGl~aA~~L~~~G~~v~iiE~~~~~GGtw~~~~ypg~~~dv~s~~y~~~f~~~~~~~~~~~~~~~~~~ei 101 (549)
T 4ap3_A 22 YDVVVVGAGIAGLYAIHRFRSQGLTVRAFEAASGVGGVWYWNRYPGARCDVESIDYSYSFSPELEQEWNWSEKYATQPEI 101 (549)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHHCCCTTCBCSSCTTTSSCCSCHHHHHHCCCSSSSCBHHHH
T ss_pred CCEEEECchHHHHHHHHHHHhCCCCEEEEeCCCCCCCccccCCCCCceeCCCchhcccccccccccCCCCccCCCCHHHH
Confidence 479999999999999999999999999999865321 0 01 1356
Q ss_pred HHHHHHHHHhcCc--EEEcCcccEEEEEcCC-ceEEEEECCCeEEEeeEEEEecC--cCCCCC
Q 008860 289 RDFVAEQMSLRGI--EFHTEESPQAILKSTD-GSLSVKTNKGTVDGFSHVMFATG--RRPNTK 346 (551)
Q Consensus 289 ~~~l~~~l~~~Gv--~i~~~~~v~~i~~~~~-~~~~V~~~~G~~i~~d~vi~a~G--~~p~~~ 346 (551)
.+.+.+.+++.|+ +++++++|++++.+++ +.+.|++.+|+++.+|.||+|+| ..|...
T Consensus 102 ~~yl~~~~~~~g~~~~i~~~~~V~~i~~~~~~~~w~V~~~~G~~i~ad~lV~AtG~~s~p~~p 164 (549)
T 4ap3_A 102 LAYLEHVADRFDLRRDIRFDTRVTSAVLDEEGLRWTVRTDRGDEVSARFLVVAAGPLSNANTP 164 (549)
T ss_dssp HHHHHHHHHHTTCGGGEECSCCEEEEEEETTTTEEEEEETTCCEEEEEEEEECCCSEEECCCC
T ss_pred HHHHHHHHHHcCCCccEEECCEEEEEEEcCCCCEEEEEECCCCEEEeCEEEECcCCCCCCCCC
Confidence 6777788888888 8999999999987654 34789999999999999999999 555543
|
| >2bs2_A Quinol-fumarate reductase flavoprotein subunit A; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 2bs3_A* 1e7p_A* 2bs4_A* 1qlb_A* | Back alignment and structure |
|---|
Probab=98.35 E-value=3.6e-06 Score=91.44 Aligned_cols=58 Identities=14% Similarity=0.116 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEE---CCCe--EEEeeEEEEecCcCC
Q 008860 286 EDIRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKT---NKGT--VDGFSHVMFATGRRP 343 (551)
Q Consensus 286 ~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~---~~G~--~i~~d~vi~a~G~~p 343 (551)
..+...+.+.+++.||+++.++.|.++..+++.+..|.. .+|+ .+.++.||+|+|...
T Consensus 158 ~~l~~~L~~~a~~~gv~i~~~~~v~~L~~~~g~v~Gv~~~~~~~G~~~~i~A~~VVlATGG~~ 220 (660)
T 2bs2_A 158 HTMLFAVANECLKLGVSIQDRKEAIALIHQDGKCYGAVVRDLVTGDIIAYVAKGTLIATGGYG 220 (660)
T ss_dssp HHHHHHHHHHHHHHTCEEECSEEEEEEEEETTEEEEEEEEETTTCCEEEEECSEEEECCCCCG
T ss_pred HHHHHHHHHHHHhCCCEEEECcEEEEEEecCCEEEEEEEEECCCCcEEEEEcCEEEEccCcch
Confidence 356677778888889999999999999876554344443 5675 489999999999754
|
| >3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A* | Back alignment and structure |
|---|
Probab=98.35 E-value=5.1e-06 Score=88.33 Aligned_cols=100 Identities=18% Similarity=0.202 Sum_probs=81.0
Q ss_pred CeEEEEcCcHHHHHHHHHHH-hCCCeEEEEeecCccC--------CC-------------C----------------CHH
Q 008860 246 EKIAIVGGGYIALEFAGIFS-GLTSEVHVFIRQKKVL--------RG-------------F----------------DED 287 (551)
Q Consensus 246 ~~vvViG~G~~g~e~a~~l~-~~g~~Vtlv~~~~~~l--------~~-------------~----------------~~~ 287 (551)
.+|+|||+|+.|+.+|..|+ +.|.+|+++++.+.+. +. + .++
T Consensus 9 ~dVvIIGaG~aGl~aA~~L~~~~G~~v~viE~~~~~GGtw~~~~ypg~~~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~e 88 (540)
T 3gwf_A 9 VDAVVIGAGFGGIYAVHKLHHELGLTTVGFDKADGPGGTWYWNRYPGALSDTESHLYRFSFDRDLLQESTWKTTYITQPE 88 (540)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSSCTHHHHCCCTTCEEEEEGGGSSCCSCHHHHHHCCCSBSEEEHHH
T ss_pred CCEEEECcCHHHHHHHHHHHHcCCCCEEEEECCCCCCCcccccCCCCceecCCcceeeeccccccccCCCCcccCCCHHH
Confidence 47999999999999999999 9999999999865321 00 1 235
Q ss_pred HHHHHHHHHHhcCc--EEEcCcccEEEEEcCC-ceEEEEECCCeEEEeeEEEEecCc--CCCC
Q 008860 288 IRDFVAEQMSLRGI--EFHTEESPQAILKSTD-GSLSVKTNKGTVDGFSHVMFATGR--RPNT 345 (551)
Q Consensus 288 ~~~~l~~~l~~~Gv--~i~~~~~v~~i~~~~~-~~~~V~~~~G~~i~~d~vi~a~G~--~p~~ 345 (551)
+.+.+.+.+++.|+ +++++++|++++.+++ +.+.|++.+|+++.+|.||+|+|. .|..
T Consensus 89 i~~~l~~~~~~~g~~~~i~~~~~V~~i~~~~~~~~~~V~~~~G~~i~ad~lV~AtG~~s~p~~ 151 (540)
T 3gwf_A 89 ILEYLEDVVDRFDLRRHFKFGTEVTSALYLDDENLWEVTTDHGEVYRAKYVVNAVGLLSAINF 151 (540)
T ss_dssp HHHHHHHHHHHTTCGGGEEESCCEEEEEEETTTTEEEEEETTSCEEEEEEEEECCCSCCSBCC
T ss_pred HHHHHHHHHHHcCCcceeEeccEEEEEEEeCCCCEEEEEEcCCCEEEeCEEEECCcccccCCC
Confidence 66677788888898 8999999999987665 347899999999999999999995 5544
|
| >3hyw_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3hyv_A* 3hyx_A* | Back alignment and structure |
|---|
Probab=98.34 E-value=2.4e-07 Score=96.01 Aligned_cols=97 Identities=21% Similarity=0.229 Sum_probs=74.5
Q ss_pred CCeEEEEcCcHHHHHHHHHHHhCC--CeEEEEeecCccCC--C--------C-CHHHHHHHHHHHHhcCcEEEcCcccEE
Q 008860 245 PEKIAIVGGGYIALEFAGIFSGLT--SEVHVFIRQKKVLR--G--------F-DEDIRDFVAEQMSLRGIEFHTEESPQA 311 (551)
Q Consensus 245 ~~~vvViG~G~~g~e~a~~l~~~g--~~Vtlv~~~~~~l~--~--------~-~~~~~~~l~~~l~~~Gv~i~~~~~v~~ 311 (551)
.|+|+|||+|+.|+.+|..|++++ .+|+++++.+.+.- . . .+++...+.+.+++.||+++.+ +|++
T Consensus 2 ~K~VvIIGgG~aGl~aA~~L~~~~~~~~VtlI~~~~~~~~~p~l~~v~~g~~~~~~i~~~~~~~~~~~gv~~i~~-~v~~ 80 (430)
T 3hyw_A 2 AKHVVVIGGGVGGIATAYNLRNLMPDLKITLISDRPYFGFTPAFPHLAMGWRKFEDISVPLAPLLPKFNIEFINE-KAES 80 (430)
T ss_dssp CCEEEEECSSHHHHHHHHHHHHHCTTCEEEEECSSSEEECGGGHHHHHHTCSCGGGSEEESTTTGGGGTEEEECS-CEEE
T ss_pred CCcEEEECCCHHHHHHHHHHhccCcCCeEEEEcCCCCCccCccHHHHhcCCCCHHHhhhcHHHHHHHCCcEEEEe-EEEE
Confidence 478999999999999999999875 68999999875321 0 1 1111222345667889999877 8999
Q ss_pred EEEcCCceEEEEECCCeEEEeeEEEEecCcCCCC
Q 008860 312 ILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNT 345 (551)
Q Consensus 312 i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~~ 345 (551)
|+.+.+ +|++.+|+++++|.+|+|||.++..
T Consensus 81 Id~~~~---~V~~~~g~~i~YD~LViAtG~~~~~ 111 (430)
T 3hyw_A 81 IDPDAN---TVTTQSGKKIEYDYLVIATGPKLVF 111 (430)
T ss_dssp EETTTT---EEEETTCCEEECSEEEECCCCEEEC
T ss_pred EECCCC---EEEECCCCEEECCEEEEeCCCCccC
Confidence 987654 4889999999999999999987643
|
| >2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A* | Back alignment and structure |
|---|
Probab=98.34 E-value=2.1e-06 Score=89.27 Aligned_cols=100 Identities=21% Similarity=0.183 Sum_probs=77.3
Q ss_pred CCeEEEEcCcHHHHHHHHHHHhCCC--eEEEEeecCccCCC---------------------------------------
Q 008860 245 PEKIAIVGGGYIALEFAGIFSGLTS--EVHVFIRQKKVLRG--------------------------------------- 283 (551)
Q Consensus 245 ~~~vvViG~G~~g~e~a~~l~~~g~--~Vtlv~~~~~~l~~--------------------------------------- 283 (551)
..+|+|||+|+.|+.+|..|++.|. +|+++++.+.+...
T Consensus 6 ~~dV~IIGaG~aGl~aA~~L~~~G~~~~V~v~E~~~~~GG~~~~~~~~~~~~~ip~~~~~~~~~~~~~g~~~~~~~~~~~ 85 (447)
T 2gv8_A 6 IRKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGGVWNYTSTLSNKLPVPSTNPILTTEPIVGPAALPVYPSPLY 85 (447)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSSSSSTTCSCCSCCCSCCCSSBCCTTCCCCCBCCSSSCCBCCCCCC
T ss_pred CCEEEEECccHHHHHHHHHHHhcCCCCCeEEEecCCCCCCeecCCCCCCcccccccccccccccccccccccCCccCchh
Confidence 4689999999999999999999999 99999987532100
Q ss_pred -------------C--------------CHHHHHHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEECC---Ce---EE
Q 008860 284 -------------F--------------DEDIRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTNK---GT---VD 330 (551)
Q Consensus 284 -------------~--------------~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~---G~---~i 330 (551)
+ ..++.+.+.+.+++.++.++++++|++++.++++ +.|++.+ |+ ++
T Consensus 86 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~i~~~t~V~~v~~~~~~-~~V~~~~~~~G~~~~~~ 164 (447)
T 2gv8_A 86 RDLQTNTPIELMGYCDQSFKPQTLQFPHRHTIQEYQRIYAQPLLPFIKLATDVLDIEKKDGS-WVVTYKGTKAGSPISKD 164 (447)
T ss_dssp TTCBCSSCHHHHSCTTCCCCTTCCSSCBHHHHHHHHHHHHGGGGGGEECSEEEEEEEEETTE-EEEEEEESSTTCCEEEE
T ss_pred hhhccCCCHHHhccCCCCCCCCCCCCCCHHHHHHHHHHHHHHhhCeEEeCCEEEEEEeCCCe-EEEEEeecCCCCeeEEE
Confidence 0 0134455666666778889999999999887654 6676654 66 79
Q ss_pred EeeEEEEecCc--CCCC
Q 008860 331 GFSHVMFATGR--RPNT 345 (551)
Q Consensus 331 ~~d~vi~a~G~--~p~~ 345 (551)
.+|.||+|+|. .|+.
T Consensus 165 ~~d~VVvAtG~~s~p~~ 181 (447)
T 2gv8_A 165 IFDAVSICNGHYEVPYI 181 (447)
T ss_dssp EESEEEECCCSSSSBCB
T ss_pred EeCEEEECCCCCCCCCC
Confidence 99999999999 5554
|
| >2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=98.30 E-value=3.3e-06 Score=86.36 Aligned_cols=32 Identities=25% Similarity=0.431 Sum_probs=30.6
Q ss_pred CccEEEECCChHHHHHHHHHHhCCCcEEEEcc
Q 008860 72 DFDLFTIGAGSGGVRASRFAANFGASVAICEL 103 (551)
Q Consensus 72 ~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~ 103 (551)
++||+|||||++|+++|..|++.|++|+|||+
T Consensus 6 ~~dVvIVGaG~aGl~~A~~L~~~G~~V~viE~ 37 (399)
T 2x3n_A 6 HIDVLINGCGIGGAMLAYLLGRQGHRVVVVEQ 37 (399)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEECS
T ss_pred cCCEEEECcCHHHHHHHHHHHhCCCcEEEEeC
Confidence 48999999999999999999999999999994
|
| >2rgh_A Alpha-glycerophosphate oxidase; flavoprotein oxidase, oxidoreductase; HET: FAD; 2.30A {Streptococcus SP} PDB: 2rgo_A* | Back alignment and structure |
|---|
Probab=98.30 E-value=6.2e-06 Score=88.39 Aligned_cols=59 Identities=14% Similarity=0.043 Sum_probs=46.0
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEEC---CCe--EEEeeEEEEecCcCC
Q 008860 285 DEDIRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTN---KGT--VDGFSHVMFATGRRP 343 (551)
Q Consensus 285 ~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~---~G~--~i~~d~vi~a~G~~p 343 (551)
+..+...+.+.+++.|++++.+++|+++..+++++..|.+. +|+ ++.+|.||+|+|...
T Consensus 187 ~~~l~~~l~~~a~~~Ga~i~~~t~V~~l~~~~~~v~gV~~~d~~tg~~~~i~A~~VV~AaG~ws 250 (571)
T 2rgh_A 187 DARLVIDNIKKAAEDGAYLVSKMKAVGFLYEGDQIVGVKARDLLTDEVIEIKAKLVINTSGPWV 250 (571)
T ss_dssp HHHHHHHHHHHHHHTTCEEESSEEEEEEEEETTEEEEEEEEETTTCCEEEEEBSCEEECCGGGH
T ss_pred hHHHHHHHHHHHHHcCCeEEeccEEEEEEEeCCEEEEEEEEEcCCCCEEEEEcCEEEECCChhH
Confidence 45666777788889999999999999998876654456542 343 699999999999764
|
| >1jnr_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1jnz_A* 2fjb_A* 2fja_A* 2fjd_A* 2fje_A* | Back alignment and structure |
|---|
Probab=98.30 E-value=9e-06 Score=88.38 Aligned_cols=56 Identities=18% Similarity=0.159 Sum_probs=41.9
Q ss_pred HHHHHHHHHhc-Cc-EEEcCcccEEEEEcCC---ceEEEEE---CCCe--EEEeeEEEEecCcCCC
Q 008860 289 RDFVAEQMSLR-GI-EFHTEESPQAILKSTD---GSLSVKT---NKGT--VDGFSHVMFATGRRPN 344 (551)
Q Consensus 289 ~~~l~~~l~~~-Gv-~i~~~~~v~~i~~~~~---~~~~V~~---~~G~--~i~~d~vi~a~G~~p~ 344 (551)
...+.+.+++. || +++.++.|+++..+++ .+..|.. .+|+ .+.++.||+|+|....
T Consensus 154 ~~~l~~~~~~~~gv~~i~~~~~v~~L~~~~~~~g~v~Gv~~~~~~~g~~~~i~A~~VVlAtGG~~~ 219 (643)
T 1jnr_A 154 KPIIAEAAKMAVGEENIYERVFIFELLKDNNDPNAVAGAVGFSVREPKFYVFKAKAVILATGGATL 219 (643)
T ss_dssp HHHHHHHHHHHHCGGGEECSEEEEEEEECTTCTTBEEEEEEEESSSSCEEEEECSEEEECCCCBCS
T ss_pred HHHHHHHHHhcCCCcEEEecCEEEEEEEcCCccceeEEEEEEEecCCcEEEEEcCEEEECCCcccc
Confidence 44556666666 99 9999999999987665 5444443 5665 5899999999997654
|
| >3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum} | Back alignment and structure |
|---|
Probab=98.29 E-value=4.9e-06 Score=82.19 Aligned_cols=98 Identities=15% Similarity=0.153 Sum_probs=77.4
Q ss_pred CeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCc-----------cCCC----CCHHHHHHHHHHHHhcCcEEEcCcccE
Q 008860 246 EKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKK-----------VLRG----FDEDIRDFVAEQMSLRGIEFHTEESPQ 310 (551)
Q Consensus 246 ~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~-----------~l~~----~~~~~~~~l~~~l~~~Gv~i~~~~~v~ 310 (551)
.+|+|||+|+.|+.+|..|++.|.+|+++++... ..+. ...++.+.+.+.+++.|++++. .++.
T Consensus 17 ~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~v~ 95 (319)
T 3cty_A 17 FDVVIVGAGAAGFSAAVYAARSGFSVAILDKAVAGGLTAEAPLVENYLGFKSIVGSELAKLFADHAANYAKIREG-VEVR 95 (319)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSTTGGGGGCSCBCCBTTBSSBCHHHHHHHHHHHHHTTSEEEET-CCEE
T ss_pred CcEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCCCccccccchhhhcCCCcccCHHHHHHHHHHHHHHcCCEEEE-eeEE
Confidence 4799999999999999999999999999998421 0111 1245667777888889999998 6899
Q ss_pred EEEEcCCceEEEEECCCeEEEeeEEEEecCcCCCCC
Q 008860 311 AILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNTK 346 (551)
Q Consensus 311 ~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~~~ 346 (551)
+++.+++. +.|.+ +++++.+|.+|+|+|..|...
T Consensus 96 ~i~~~~~~-~~v~~-~~~~~~~~~li~AtG~~~~~~ 129 (319)
T 3cty_A 96 SIKKTQGG-FDIET-NDDTYHAKYVIITTGTTHKHL 129 (319)
T ss_dssp EEEEETTE-EEEEE-SSSEEEEEEEEECCCEEECCC
T ss_pred EEEEeCCE-EEEEE-CCCEEEeCEEEECCCCCcccC
Confidence 99876654 56766 556799999999999987654
|
| >3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A* | Back alignment and structure |
|---|
Probab=98.28 E-value=1.4e-06 Score=90.81 Aligned_cols=34 Identities=21% Similarity=0.409 Sum_probs=31.5
Q ss_pred CCCccEEEECCChHHHHHHHHHHhCCCcEEEEcc
Q 008860 70 HYDFDLFTIGAGSGGVRASRFAANFGASVAICEL 103 (551)
Q Consensus 70 ~~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~ 103 (551)
.+++||+|||||++|+++|+.|++.|++|+|||+
T Consensus 4 ~~~~dVvIVGaG~aGl~aA~~La~~G~~V~vlE~ 37 (453)
T 3atr_A 4 ELKYDVLIIGGGFAGSSAAYQLSRRGLKILLVDS 37 (453)
T ss_dssp EEECSEEEECCSHHHHHHHHHHSSSSCCEEEECS
T ss_pred CCcCCEEEECcCHHHHHHHHHHHHCCCCEEEEEC
Confidence 3468999999999999999999999999999994
|
| >1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A* | Back alignment and structure |
|---|
Probab=98.27 E-value=4e-06 Score=82.81 Aligned_cols=98 Identities=12% Similarity=0.055 Sum_probs=77.8
Q ss_pred CeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCc-----------cCCCC-----CHHHHHHHHHHHHhcCcEEEcCccc
Q 008860 246 EKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKK-----------VLRGF-----DEDIRDFVAEQMSLRGIEFHTEESP 309 (551)
Q Consensus 246 ~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~-----------~l~~~-----~~~~~~~l~~~l~~~Gv~i~~~~~v 309 (551)
.+|+|||+|+.|+.+|..|++.|.+|+++++... ..+.+ .+++.+.+.+.+++.|++++.++ +
T Consensus 6 ~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v 84 (320)
T 1trb_A 6 SKLLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQLTTTTEVENWPGDPNDLTGPLLMERMHEHATKFETEIIFDH-I 84 (320)
T ss_dssp EEEEEECCSHHHHHHHHHHHTTTCCCEEECCSSTTGGGGGCSBCCCSTTCCSSCBHHHHHHHHHHHHHHTTCEEECCC-E
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCcEEEEccCCCCceEecchhhhhCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEee-e
Confidence 4799999999999999999999999999986320 01112 24666777888889999999985 8
Q ss_pred EEEEEcCCceEEEEECCCeEEEeeEEEEecCcCCCCC
Q 008860 310 QAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNTK 346 (551)
Q Consensus 310 ~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~~~ 346 (551)
..++.+++. +.+ +.+++++.+|.+|+|+|..|...
T Consensus 85 ~~i~~~~~~-~~v-~~~~~~~~~~~lv~AtG~~~~~~ 119 (320)
T 1trb_A 85 NKVDLQNRP-FRL-NGDNGEYTCDALIIATGASARYL 119 (320)
T ss_dssp EEEECSSSS-EEE-EESSCEEEEEEEEECCCEEECCC
T ss_pred eEEEecCCE-EEE-EeCCCEEEcCEEEECCCCCcCCC
Confidence 888776555 556 66778899999999999987654
|
| >3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A* | Back alignment and structure |
|---|
Probab=98.27 E-value=4.4e-07 Score=93.35 Aligned_cols=97 Identities=20% Similarity=0.278 Sum_probs=75.7
Q ss_pred CeEEEEcCcHHHHHHHHHHHh---CCCeEEEEeecCccCC---------C--CCHHHHHHHHHHHHhcCcEEEcCcccEE
Q 008860 246 EKIAIVGGGYIALEFAGIFSG---LTSEVHVFIRQKKVLR---------G--FDEDIRDFVAEQMSLRGIEFHTEESPQA 311 (551)
Q Consensus 246 ~~vvViG~G~~g~e~a~~l~~---~g~~Vtlv~~~~~~l~---------~--~~~~~~~~l~~~l~~~Gv~i~~~~~v~~ 311 (551)
++|+|||+|+.|+++|..|++ .|.+|+++++.+.+.. . ...++...+.+.+++.|++++.+ +|++
T Consensus 2 ~~VvIIGgG~aGl~aA~~L~~~~~~g~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~-~v~~ 80 (409)
T 3h8l_A 2 TKVLVLGGRFGALTAAYTLKRLVGSKADVKVINKSRFSYFRPALPHVAIGVRDVDELKVDLSEALPEKGIQFQEG-TVEK 80 (409)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHHGGGSEEEEEESSSEEEECCSSCCCCSSCCCCCCEEEEHHHHTGGGTCEEEEC-EEEE
T ss_pred CeEEEECCCHHHHHHHHHHHhhCCCCCeEEEEeCCCCceeccchhhcccCCcCHHHHHHHHHHHHhhCCeEEEEe-eEEE
Confidence 579999999999999999999 8999999998875421 1 12334455777888899999988 8999
Q ss_pred EEEcCCceEEEEECCCe----EEEeeEEEEecCcCCCCC
Q 008860 312 ILKSTDGSLSVKTNKGT----VDGFSHVMFATGRRPNTK 346 (551)
Q Consensus 312 i~~~~~~~~~V~~~~G~----~i~~d~vi~a~G~~p~~~ 346 (551)
++.+++. |.+.+++ ++.+|.||+|+|.+|+..
T Consensus 81 i~~~~~~---V~~~~g~~~~~~~~~d~lViAtG~~~~~~ 116 (409)
T 3h8l_A 81 IDAKSSM---VYYTKPDGSMAEEEYDYVIVGIGAHLATE 116 (409)
T ss_dssp EETTTTE---EEEECTTSCEEEEECSEEEECCCCEECGG
T ss_pred EeCCCCE---EEEccCCcccceeeCCEEEECCCCCcCcc
Confidence 8765543 5554554 489999999999988764
|
| >2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2 | Back alignment and structure |
|---|
Probab=98.27 E-value=4e-06 Score=85.70 Aligned_cols=100 Identities=19% Similarity=0.284 Sum_probs=77.3
Q ss_pred CCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCCC------CCHHHHH----------------------------
Q 008860 245 PEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRG------FDEDIRD---------------------------- 290 (551)
Q Consensus 245 ~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~~------~~~~~~~---------------------------- 290 (551)
..+|+|||+|+.|+.+|..|++.|.+|+++++.+..... +.+...+
T Consensus 5 ~~~V~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~g~ 84 (397)
T 2vou_A 5 TDRIAVVGGSISGLTAALMLRDAGVDVDVYERSPQPLSGFGTGIVVQPELVHYLLEQGVELDSISVPSSSMEYVDALTGE 84 (397)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCCCCSCEEECCHHHHHHHHHTTCCGGGTCBCCCEEEEEETTTCC
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCCCccccccccChhHHHHHHHcCCccccccccccceEEEecCCCC
Confidence 468999999999999999999999999999987653111 1222111
Q ss_pred ---------------HHHHHHHh--cCcEEEcCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCcCCCC
Q 008860 291 ---------------FVAEQMSL--RGIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNT 345 (551)
Q Consensus 291 ---------------~l~~~l~~--~Gv~i~~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~~ 345 (551)
.+.+.|.+ .|++++++++|++++.++++ +.|++.+|+++.+|.||.|.|..+..
T Consensus 85 ~~~~~~~~~~~~~~~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~-v~v~~~~g~~~~ad~vV~AdG~~S~v 155 (397)
T 2vou_A 85 RVGSVPADWRFTSYDSIYGGLYELFGPERYHTSKCLVGLSQDSET-VQMRFSDGTKAEANWVIGADGGASVV 155 (397)
T ss_dssp EEEEEECCCCEEEHHHHHHHHHHHHCSTTEETTCCEEEEEECSSC-EEEEETTSCEEEESEEEECCCTTCHH
T ss_pred ccccccCcccccCHHHHHHHHHHhCCCcEEEcCCEEEEEEecCCE-EEEEECCCCEEECCEEEECCCcchhH
Confidence 12223322 38899999999999987776 78999999899999999999997653
|
| >1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A* | Back alignment and structure |
|---|
Probab=98.27 E-value=1.7e-06 Score=89.57 Aligned_cols=100 Identities=17% Similarity=0.246 Sum_probs=76.6
Q ss_pred CCeEEEEcCcHHHHHHHHHHHhCCC--eEEEEeecCccCC-------CC------CHHHHHHHHHHHHhcCcEEEcCccc
Q 008860 245 PEKIAIVGGGYIALEFAGIFSGLTS--EVHVFIRQKKVLR-------GF------DEDIRDFVAEQMSLRGIEFHTEESP 309 (551)
Q Consensus 245 ~~~vvViG~G~~g~e~a~~l~~~g~--~Vtlv~~~~~~l~-------~~------~~~~~~~l~~~l~~~Gv~i~~~~~v 309 (551)
..+++|||+|+.|+.+|..|++.|. +|+++++.+.+.- .+ ...+.....+.+++.|++++.+++|
T Consensus 4 ~~~vvIIGgG~aGl~aA~~l~~~g~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~v 83 (431)
T 1q1r_A 4 NDNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDATVIPHHLPPLSKAYLAGKATAESLYLRTPDAYAAQNIQLLGGTQV 83 (431)
T ss_dssp SCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCCSCCBCSGGGGTTTTTTCSCSGGGBSSCHHHHHHTTEEEECSCCE
T ss_pred CCcEEEEcCHHHHHHHHHHHHccCcCCCEEEEECCCCCCCcCCCCcHHHhCCCCChHHhcccCHHHHHhCCCEEEeCCEE
Confidence 3689999999999999999999998 7999998654210 00 0111111245677889999999999
Q ss_pred EEEEEcCCceEEEEECCCeEEEeeEEEEecCcCCCCCC
Q 008860 310 QAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNTKN 347 (551)
Q Consensus 310 ~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~~~~ 347 (551)
+.++.++. .|.+.+|+++.+|.+|+|+|.+|+...
T Consensus 84 ~~i~~~~~---~v~~~~g~~~~~d~lviAtG~~p~~~~ 118 (431)
T 1q1r_A 84 TAINRDRQ---QVILSDGRALDYDRLVLATGGRPRPLP 118 (431)
T ss_dssp EEEETTTT---EEEETTSCEEECSEEEECCCEEECCCG
T ss_pred EEEECCCC---EEEECCCCEEECCEEEEcCCCCccCCC
Confidence 99976543 477788888999999999999987643
|
| >3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens} | Back alignment and structure |
|---|
Probab=98.26 E-value=8.6e-06 Score=86.77 Aligned_cols=33 Identities=33% Similarity=0.603 Sum_probs=31.1
Q ss_pred CCccEEEECCChHHHHHHHHHHhCCCcEEEEcc
Q 008860 71 YDFDLFTIGAGSGGVRASRFAANFGASVAICEL 103 (551)
Q Consensus 71 ~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~ 103 (551)
.++||+|||||++|+++|+.|++.|.+|+|||+
T Consensus 4 ~~~dVlIVGaG~aGl~~A~~La~~G~~v~viEr 36 (535)
T 3ihg_A 4 HEVDVLVVGAGLGGLSTAMFLARQGVRVLVVER 36 (535)
T ss_dssp CSEEEEEECCSHHHHHHHHHHHTTTCCEEEECS
T ss_pred ccCcEEEECcCHHHHHHHHHHHHCCCCEEEEeC
Confidence 358999999999999999999999999999994
|
| >3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni} | Back alignment and structure |
|---|
Probab=98.26 E-value=4.9e-06 Score=81.80 Aligned_cols=98 Identities=19% Similarity=0.214 Sum_probs=75.8
Q ss_pred CeEEEEcCcHHHHHHHHHHHhCCCeEEE-EeecCc---c--------CCCCC-----HHHHHHHHHHHHhcCcEEEcCcc
Q 008860 246 EKIAIVGGGYIALEFAGIFSGLTSEVHV-FIRQKK---V--------LRGFD-----EDIRDFVAEQMSLRGIEFHTEES 308 (551)
Q Consensus 246 ~~vvViG~G~~g~e~a~~l~~~g~~Vtl-v~~~~~---~--------l~~~~-----~~~~~~l~~~l~~~Gv~i~~~~~ 308 (551)
.+|+|||+|+.|+.+|..|++.|.+|++ +++... + .+.++ .++...+.+.+++.|++++.+ +
T Consensus 5 ~~vvIIG~G~aGl~aA~~l~~~g~~v~li~e~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~ 83 (315)
T 3r9u_A 5 LDVAIIGGGPAGLSAGLYATRGGLKNVVMFEKGMPGGQITSSSEIENYPGVAQVMDGISFMAPWSEQCMRFGLKHEMV-G 83 (315)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHTCSCEEEECSSSTTGGGGGCSCBCCSTTCCSCBCHHHHHHHHHHHHTTTCCEEECC-C
T ss_pred ceEEEECCCHHHHHHHHHHHHCCCCeEEEEeCCCCCceeeeeceeccCCCCCCCCCHHHHHHHHHHHHHHcCcEEEEE-E
Confidence 5899999999999999999999999999 887320 0 12222 567788888899999999998 8
Q ss_pred cEEEEEcC--CceEEEEECCCeEEEeeEEEEecCcCCCCC
Q 008860 309 PQAILKST--DGSLSVKTNKGTVDGFSHVMFATGRRPNTK 346 (551)
Q Consensus 309 v~~i~~~~--~~~~~V~~~~G~~i~~d~vi~a~G~~p~~~ 346 (551)
|.++ .++ +. +.+.+.++.++.+|.+|+|+|..|+..
T Consensus 84 v~~i-~~~~~~~-~~v~~~~~~~~~~d~lvlAtG~~~~~~ 121 (315)
T 3r9u_A 84 VEQI-LKNSDGS-FTIKLEGGKTELAKAVIVCTGSAPKKA 121 (315)
T ss_dssp EEEE-EECTTSC-EEEEETTSCEEEEEEEEECCCEEECCC
T ss_pred EEEE-ecCCCCc-EEEEEecCCEEEeCEEEEeeCCCCCCC
Confidence 9998 554 44 554233222899999999999988654
|
| >2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A* | Back alignment and structure |
|---|
Probab=98.26 E-value=4.8e-06 Score=85.15 Aligned_cols=34 Identities=24% Similarity=0.372 Sum_probs=31.7
Q ss_pred CCCccEEEECCChHHHHHHHHHHhCCCcEEEEcc
Q 008860 70 HYDFDLFTIGAGSGGVRASRFAANFGASVAICEL 103 (551)
Q Consensus 70 ~~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~ 103 (551)
+.++||+|||||++|+++|..|++.|.+|+|||+
T Consensus 24 ~~~~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~ 57 (398)
T 2xdo_A 24 LSDKNVAIIGGGPVGLTMAKLLQQNGIDVSVYER 57 (398)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHTTTCEEEEEEC
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEeC
Confidence 3468999999999999999999999999999994
|
| >2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A* | Back alignment and structure |
|---|
Probab=98.26 E-value=3.9e-06 Score=87.66 Aligned_cols=101 Identities=19% Similarity=0.318 Sum_probs=77.5
Q ss_pred CeEEEEcCcHHHHHHHHHHHh---CCCe---EEEEeecCccCC-------------------------------------
Q 008860 246 EKIAIVGGGYIALEFAGIFSG---LTSE---VHVFIRQKKVLR------------------------------------- 282 (551)
Q Consensus 246 ~~vvViG~G~~g~e~a~~l~~---~g~~---Vtlv~~~~~~l~------------------------------------- 282 (551)
++|+|||+|+.|+.+|..|.+ .|.+ |+++++.+.+..
T Consensus 3 ~~V~IIGaG~aGl~aA~~L~~~~~~G~~~~~V~v~E~~~~~GG~w~~~~~~g~~~~g~~~~~~~y~~l~~~~~~~~~~~~ 82 (464)
T 2xve_A 3 TRIAILGAGPSGMAQLRAFQSAQEKGAEIPELVCFEKQADWGGQWNYTWRTGLDENGEPVHSSMYRYLWSNGPKECLEFA 82 (464)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHHHTTCCCCEEEEECSSSSSCGGGSCCSCCSBCTTSSBCCCCCCTTCBCSSCGGGTCBT
T ss_pred CcEEEECccHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCCEeecCCCCCccccCCCCcCccccchhhcCChhhcccC
Confidence 689999999999999999999 9999 999998754210
Q ss_pred CC---------------CHHHHHHHHHHHHhcCcE--EEcCcccEEEEEcCC-ceEEEEECC---C--eEEEeeEEEEec
Q 008860 283 GF---------------DEDIRDFVAEQMSLRGIE--FHTEESPQAILKSTD-GSLSVKTNK---G--TVDGFSHVMFAT 339 (551)
Q Consensus 283 ~~---------------~~~~~~~l~~~l~~~Gv~--i~~~~~v~~i~~~~~-~~~~V~~~~---G--~~i~~d~vi~a~ 339 (551)
.+ ..++.+.+.+.+++.|++ ++++++|++++.+++ +...|++.+ | .++.+|.||+|+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~~~i~~~~~V~~v~~~~~~~~~~V~~~~~~~g~~~~~~~d~VVvAt 162 (464)
T 2xve_A 83 DYTFDEHFGKPIASYPPREVLWDYIKGRVEKAGVRKYIRFNTAVRHVEFNEDSQTFTVTVQDHTTDTIYSEEFDYVVCCT 162 (464)
T ss_dssp TBCHHHHHSSCCCSSCBHHHHHHHHHHHHHHHTCGGGEECSEEEEEEEEETTTTEEEEEEEETTTTEEEEEEESEEEECC
T ss_pred CCCCCcccCCCCCCCCCHHHHHHHHHHHHHHcCCcceEEeCCEEEEEEEcCCCCcEEEEEEEcCCCceEEEEcCEEEECC
Confidence 00 134556677777888998 999999999987654 235666654 4 568999999999
Q ss_pred C--cCCCCC
Q 008860 340 G--RRPNTK 346 (551)
Q Consensus 340 G--~~p~~~ 346 (551)
| ..|+..
T Consensus 163 G~~s~p~~p 171 (464)
T 2xve_A 163 GHFSTPYVP 171 (464)
T ss_dssp CSSSSBCCC
T ss_pred CCCCCCccC
Confidence 9 666654
|
| >3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A* | Back alignment and structure |
|---|
Probab=98.26 E-value=3.2e-06 Score=86.93 Aligned_cols=97 Identities=19% Similarity=0.187 Sum_probs=76.1
Q ss_pred CeEEEEcCcHHHHHHHHHHHhCCCe--EEEEeecCccCCCCCHHHHH-------------HHHHHHHhcCcEEEcCcccE
Q 008860 246 EKIAIVGGGYIALEFAGIFSGLTSE--VHVFIRQKKVLRGFDEDIRD-------------FVAEQMSLRGIEFHTEESPQ 310 (551)
Q Consensus 246 ~~vvViG~G~~g~e~a~~l~~~g~~--Vtlv~~~~~~l~~~~~~~~~-------------~l~~~l~~~Gv~i~~~~~v~ 310 (551)
++|+|||+|+.|+.+|..|++.|.+ |+++++.+.+.- ..+.+.. ...+.+++.|++++.+++++
T Consensus 3 ~~vvIIGaG~AGl~aA~~L~~~g~~~~V~li~~~~~~~y-~~~~l~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~v~ 81 (410)
T 3ef6_A 3 THVAIIGNGVGGFTTAQALRAEGFEGRISLIGDEPHLPY-DRPSLSKAVLDGSLERPPILAEADWYGEARIDMLTGPEVT 81 (410)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCSEEEEEECSSSSSB-CSGGGGTHHHHTSSSSCCBSSCTTHHHHTTCEEEESCCEE
T ss_pred CCEEEEcccHHHHHHHHHHHccCcCCeEEEEECCCCCCc-CCccccHHHhCCCCCHHHhcCCHHHHHHCCCEEEeCCEEE
Confidence 5899999999999999999999986 999998765311 1111111 12345678899999999999
Q ss_pred EEEEcCCceEEEEECCCeEEEeeEEEEecCcCCCCC
Q 008860 311 AILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNTK 346 (551)
Q Consensus 311 ~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~~~ 346 (551)
.++.+.. .|.+.+|+++.+|.+|+|||..|...
T Consensus 82 ~id~~~~---~v~~~~g~~~~~d~lvlAtG~~p~~~ 114 (410)
T 3ef6_A 82 ALDVQTR---TISLDDGTTLSADAIVIATGSRARTM 114 (410)
T ss_dssp EEETTTT---EEEETTSCEEECSEEEECCCEEECCC
T ss_pred EEECCCC---EEEECCCCEEECCEEEEccCCcccCC
Confidence 9976543 47888998999999999999988764
|
| >2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase, complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas testosteroni} PDB: 2dki_A* | Back alignment and structure |
|---|
Probab=98.25 E-value=1.7e-05 Score=86.19 Aligned_cols=57 Identities=18% Similarity=0.119 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHhcCc--EEEcCcccEEEEEcCC---ceEEEEEC------CC--eEEEeeEEEEecCcCC
Q 008860 287 DIRDFVAEQMSLRGI--EFHTEESPQAILKSTD---GSLSVKTN------KG--TVDGFSHVMFATGRRP 343 (551)
Q Consensus 287 ~~~~~l~~~l~~~Gv--~i~~~~~v~~i~~~~~---~~~~V~~~------~G--~~i~~d~vi~a~G~~p 343 (551)
.+.+.+.+.+++.|+ +++++++|++++.+++ ..++|++. +| +++.+|.||.|.|.+.
T Consensus 142 ~l~~~L~~~a~~~g~~v~v~~~~~v~~l~~~~~~~~~~v~v~~~~~~~~~~G~~~~i~a~~vVgADG~~S 211 (639)
T 2dkh_A 142 RVHDHYLERMRNSPSRLEPHYARRVLDVKVDHGAADYPVTVTLERCDAAHAGQIETVQARYVVGCDGARS 211 (639)
T ss_dssp HHHHHHHHHHHHSTTCCCCBCSEEEEEEEECTTCSSCCEEEEEEECSGGGTTCEEEEEEEEEEECCCTTC
T ss_pred HHHHHHHHHHHhCCCCcEEecCCEEEEEEECCCCCcCCEEEEEEeccccCCCCeEEEEeCEEEECCCcch
Confidence 456778888888877 9999999999988653 13666654 46 4799999999999754
|
| >1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A | Back alignment and structure |
|---|
Probab=98.25 E-value=5.5e-06 Score=87.84 Aligned_cols=102 Identities=16% Similarity=0.158 Sum_probs=81.4
Q ss_pred CCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecC--ccC-----------CC-CCHHHHHHHHHHHHhcCcEEEcCcccE
Q 008860 245 PEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQK--KVL-----------RG-FDEDIRDFVAEQMSLRGIEFHTEESPQ 310 (551)
Q Consensus 245 ~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~--~~l-----------~~-~~~~~~~~l~~~l~~~Gv~i~~~~~v~ 310 (551)
..+|+|||+|+.|+.+|..|++.|.+|+++++.. .+. +. ..+++...+.+.+++.|++++.+++|.
T Consensus 212 ~~dVvIIGgG~AGl~aA~~la~~G~~v~lie~~~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~v~~~~~v~ 291 (521)
T 1hyu_A 212 AYDVLIVGSGPAGAAAAVYSARKGIRTGLMGERFGGQVLDTVDIENYISVPKTEGQKLAGALKAHVSDYDVDVIDSQSAS 291 (521)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSTTGGGTTCSCBCCBTTBSSBCHHHHHHHHHHHHHTSCEEEECSCCEE
T ss_pred cccEEEECCcHHHHHHHHHHHhCCCeEEEEECCCCCcccccccccccCCCCCCCHHHHHHHHHHHHHHcCCEEEcCCEEE
Confidence 4579999999999999999999999999997531 111 01 234677778888899999999999999
Q ss_pred EEEEcC--CceEEEEECCCeEEEeeEEEEecCcCCCCC
Q 008860 311 AILKST--DGSLSVKTNKGTVDGFSHVMFATGRRPNTK 346 (551)
Q Consensus 311 ~i~~~~--~~~~~V~~~~G~~i~~d~vi~a~G~~p~~~ 346 (551)
.+..+. ++...|.+.+|+++.+|.||+|+|.+|...
T Consensus 292 ~i~~~~~~~~~~~V~~~~g~~~~~d~vVlAtG~~~~~~ 329 (521)
T 1hyu_A 292 KLVPAATEGGLHQIETASGAVLKARSIIIATGAKWRNM 329 (521)
T ss_dssp EEECCSSTTSCEEEEETTSCEEEEEEEEECCCEEECCC
T ss_pred EEEeccCCCceEEEEECCCCEEEcCEEEECCCCCcCCC
Confidence 997542 223778889998899999999999987643
|
| >2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase; HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB: 2r0g_A* 2r0p_A* 3ept_A* | Back alignment and structure |
|---|
Probab=98.23 E-value=1.2e-05 Score=85.78 Aligned_cols=54 Identities=13% Similarity=0.153 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEECC---C--eEEEeeEEEEecCcCCC
Q 008860 287 DIRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTNK---G--TVDGFSHVMFATGRRPN 344 (551)
Q Consensus 287 ~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~---G--~~i~~d~vi~a~G~~p~ 344 (551)
.+.+.+.+.+++. ++++++|++++.++++ +++++.+ | +++.+|.||.|.|....
T Consensus 139 ~l~~~L~~~a~~~---v~~~~~v~~~~~~~~~-v~v~~~~~~~G~~~~i~a~~vVgADG~~S~ 197 (549)
T 2r0c_A 139 WLAPLLAEAVGER---LRTRSRLDSFEQRDDH-VRATITDLRTGATRAVHARYLVACDGASSP 197 (549)
T ss_dssp HHHHHHHHHHGGG---EECSEEEEEEEECSSC-EEEEEEETTTCCEEEEEEEEEEECCCTTCH
T ss_pred HHHHHHHHHHHHh---cccCcEEEEEEEeCCE-EEEEEEECCCCCEEEEEeCEEEECCCCCcH
Confidence 3456666777666 8999999999988777 6666654 6 47999999999998764
|
| >2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.23 E-value=4.8e-06 Score=82.99 Aligned_cols=99 Identities=18% Similarity=0.184 Sum_probs=78.2
Q ss_pred CCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCc-----------cCCCC-----CHHHHHHHHHHHHhcCcEEEcCcc
Q 008860 245 PEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKK-----------VLRGF-----DEDIRDFVAEQMSLRGIEFHTEES 308 (551)
Q Consensus 245 ~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~-----------~l~~~-----~~~~~~~l~~~l~~~Gv~i~~~~~ 308 (551)
..+|+|||+|+.|+.+|..|++.|.+|+++++... ..+.+ .+++.+.+.+.+++.|++++.++
T Consensus 14 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~~- 92 (335)
T 2a87_A 14 VRDVIVIGSGPAGYTAALYAARAQLAPLVFEGTSFGGALMTTTDVENYPGFRNGITGPELMDEMREQALRFGADLRMED- 92 (335)
T ss_dssp CEEEEEECCHHHHHHHHHHHHHTTCCCEEECCSSCSCGGGSCSCBCCSTTCTTCBCHHHHHHHHHHHHHHTTCEEECCC-
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCceeccchhhhcCCCCCCCCHHHHHHHHHHHHHHcCCEEEEee-
Confidence 35899999999999999999999999999985310 01112 24666777788888999999986
Q ss_pred cEEEEEcCCceEEE-EECCCeEEEeeEEEEecCcCCCCC
Q 008860 309 PQAILKSTDGSLSV-KTNKGTVDGFSHVMFATGRRPNTK 346 (551)
Q Consensus 309 v~~i~~~~~~~~~V-~~~~G~~i~~d~vi~a~G~~p~~~ 346 (551)
+.+++. ++. +.| .+.+|+++.+|.||+|+|..|...
T Consensus 93 v~~i~~-~~~-~~v~~~~~g~~~~~d~lviAtG~~~~~~ 129 (335)
T 2a87_A 93 VESVSL-HGP-LKSVVTADGQTHRARAVILAMGAAARYL 129 (335)
T ss_dssp EEEEEC-SSS-SEEEEETTSCEEEEEEEEECCCEEECCC
T ss_pred EEEEEe-CCc-EEEEEeCCCCEEEeCEEEECCCCCccCC
Confidence 888876 333 556 778888899999999999988654
|
| >3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A* | Back alignment and structure |
|---|
Probab=98.23 E-value=1.2e-06 Score=89.83 Aligned_cols=99 Identities=18% Similarity=0.141 Sum_probs=74.1
Q ss_pred CCeEEEEcCcHHHHHHHHHHHhCC--CeEEEEeecCccCCC----------CCHHHHHHHHHHHHhcCcEEEcCcccEEE
Q 008860 245 PEKIAIVGGGYIALEFAGIFSGLT--SEVHVFIRQKKVLRG----------FDEDIRDFVAEQMSLRGIEFHTEESPQAI 312 (551)
Q Consensus 245 ~~~vvViG~G~~g~e~a~~l~~~g--~~Vtlv~~~~~~l~~----------~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i 312 (551)
+|+|+|||+|+.|+.+|..|++.+ .+|+++++.+..... .+.+-...-.+.+.+.||+++.+ +|+.|
T Consensus 2 GKkVvIIG~G~AG~~aA~~L~~~~~~~~Vtlie~~~~~~~~p~~~~v~~g~~~~~~~~~~~~~~~~~gv~~i~~-~v~~i 80 (401)
T 3vrd_B 2 GRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNETYYTCYMSNEVIGGDRELASLRVGYDGLRAHGIQVVHD-SALGI 80 (401)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCSSEECSTTHHHHHHTSSCGGGGEECSHHHHHTTCEEECS-CEEEE
T ss_pred cCEEEEECCcHHHHHHHHHHHhcCcCCeEEEEeCCCCCCCccCHHHHhcCCCCHHHHhhCHHHHHHCCCEEEEe-EEEEE
Confidence 689999999999999999998875 589999987753211 11110001123456789999877 79999
Q ss_pred EEcCCceEEEEECCCeEEEeeEEEEecCcCCCCCC
Q 008860 313 LKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNTKN 347 (551)
Q Consensus 313 ~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~~~~ 347 (551)
+.+.+ .|.+.+|+++.+|.+|+|+|.+++...
T Consensus 81 d~~~~---~v~~~~g~~i~yd~LviAtG~~~~~~~ 112 (401)
T 3vrd_B 81 DPDKK---LVKTAGGAEFAYDRCVVAPGIDLLYDK 112 (401)
T ss_dssp ETTTT---EEEETTSCEEECSEEEECCCEEECGGG
T ss_pred EccCc---EEEecccceeecceeeeccCCccccCC
Confidence 77654 478899999999999999999887643
|
| >3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=98.22 E-value=1.6e-06 Score=89.05 Aligned_cols=97 Identities=15% Similarity=0.200 Sum_probs=76.0
Q ss_pred CeEEEEcCcHHHHHHHHHHHhCCC--eEEEEeecCccC-----------CC--CCHHHHHHHHHHHHhcCcEEEcCcccE
Q 008860 246 EKIAIVGGGYIALEFAGIFSGLTS--EVHVFIRQKKVL-----------RG--FDEDIRDFVAEQMSLRGIEFHTEESPQ 310 (551)
Q Consensus 246 ~~vvViG~G~~g~e~a~~l~~~g~--~Vtlv~~~~~~l-----------~~--~~~~~~~~l~~~l~~~Gv~i~~~~~v~ 310 (551)
++|+|||+|+.|+.+|..|++.|. +|+++++.+.+. .. ...++.....+.+++.|++++. ++++
T Consensus 2 k~vvIIGaG~aGl~aA~~L~~~g~~~~V~lie~~~~~~y~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~-~~v~ 80 (404)
T 3fg2_P 2 DTVLIAGAGHAGFQVAVSLRQAKYPGRIALINDEKHLPYQRPPLSKAYLKSGGDPNSLMFRPEKFFQDQAIELIS-DRMV 80 (404)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCCSCEEEECCSSSSSBCSGGGGTGGGGSCCCTTSSBSSCHHHHHHTTEEEEC-CCEE
T ss_pred CCEEEEcChHHHHHHHHHHHhhCcCCCEEEEeCCCCCCCCCccCCHHHHCCCCCHHHccCCCHHHHHhCCCEEEE-EEEE
Confidence 689999999999999999999998 899999876321 00 0111222345667889999999 8999
Q ss_pred EEEEcCCceEEEEECCCeEEEeeEEEEecCcCCCCC
Q 008860 311 AILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNTK 346 (551)
Q Consensus 311 ~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~~~ 346 (551)
.++.+.. .|.+.+|+++.+|.+|+|||.+|...
T Consensus 81 ~id~~~~---~v~~~~g~~~~~d~lvlAtG~~p~~~ 113 (404)
T 3fg2_P 81 SIDREGR---KLLLASGTAIEYGHLVLATGARNRML 113 (404)
T ss_dssp EEETTTT---EEEESSSCEEECSEEEECCCEEECCC
T ss_pred EEECCCC---EEEECCCCEEECCEEEEeeCCCccCC
Confidence 9976543 47888998999999999999987654
|
| >1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=98.22 E-value=1.5e-06 Score=88.00 Aligned_cols=98 Identities=23% Similarity=0.285 Sum_probs=74.5
Q ss_pred CCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCC----------C-CC-HHHHHHHHHHHHhcCcEEEcCcccEEE
Q 008860 245 PEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLR----------G-FD-EDIRDFVAEQMSLRGIEFHTEESPQAI 312 (551)
Q Consensus 245 ~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~----------~-~~-~~~~~~l~~~l~~~Gv~i~~~~~v~~i 312 (551)
+.+++|||+|+.|+.+|..|++.| +|+++++.+.... . .+ .++.....+.+++.|++++.+++|+.+
T Consensus 8 ~~~vvIIGgG~AGl~aA~~l~~~g-~V~lie~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~g~~v~~i 86 (367)
T 1xhc_A 8 GSKVVIVGNGPGGFELAKQLSQTY-EVTVIDKEPVPYYSKPMLSHYIAGFIPRNRLFPYSLDWYRKRGIEIRLAEEAKLI 86 (367)
T ss_dssp -CEEEEECCSHHHHHHHHHHTTTS-EEEEECSSSSCCCCSTTHHHHHTTSSCGGGGCSSCHHHHHHHTEEEECSCCEEEE
T ss_pred CCcEEEECCcHHHHHHHHHHhhcC-CEEEEECCCCCccccchhHHHHhCCCCHHHhccCCHHHHHhCCcEEEECCEEEEE
Confidence 568999999999999999999999 9999998764211 0 11 112222346677889999999999999
Q ss_pred EEcCCceEEEEECCCeEEEeeEEEEecCcCCCCCC
Q 008860 313 LKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNTKN 347 (551)
Q Consensus 313 ~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~~~~ 347 (551)
+.+. ..|. .+|+++.+|.+|+|||.+|....
T Consensus 87 d~~~---~~V~-~~g~~~~~d~lViATGs~p~~p~ 117 (367)
T 1xhc_A 87 DRGR---KVVI-TEKGEVPYDTLVLATGARAREPQ 117 (367)
T ss_dssp ETTT---TEEE-ESSCEEECSEEEECCCEEECCCC
T ss_pred ECCC---CEEE-ECCcEEECCEEEECCCCCCCCCC
Confidence 7654 2355 57778999999999999987643
|
| >3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A* | Back alignment and structure |
|---|
Probab=98.22 E-value=6.6e-06 Score=87.57 Aligned_cols=101 Identities=12% Similarity=0.100 Sum_probs=79.9
Q ss_pred CeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccC-------------------------C---------C---CCHHH
Q 008860 246 EKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVL-------------------------R---------G---FDEDI 288 (551)
Q Consensus 246 ~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l-------------------------~---------~---~~~~~ 288 (551)
.+|+|||+|+.|+.+|..|++.|.+|+++++.+.+. + . ..+++
T Consensus 10 ~dVvIIGaG~aGl~aA~~L~~~g~~v~iiE~~~~~GGtw~~~~yPg~~~d~~~~~y~~~f~~~~~~~~~~~~~~~~~~ei 89 (545)
T 3uox_A 10 LDAVVIGAGVTGIYQAFLINQAGMKVLGIEAGEDVGGTWYWNRYPGCRLDTESYAYGYFALKGIIPEWEWSENFASQPEM 89 (545)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHHCCCTTCBCSSCHHHHCHHHHTTSSTTCCCSBSSCBHHHH
T ss_pred CCEEEECccHHHHHHHHHHHhCCCCEEEEeCCCCCCCccccCCCCceeecCchhhcccccCcccccCCCccccCCCHHHH
Confidence 479999999999999999999999999999875320 0 0 12566
Q ss_pred HHHHHHHHHhcCc--EEEcCcccEEEEEcCC-ceEEEEECCCeEEEeeEEEEecC--cCCCCC
Q 008860 289 RDFVAEQMSLRGI--EFHTEESPQAILKSTD-GSLSVKTNKGTVDGFSHVMFATG--RRPNTK 346 (551)
Q Consensus 289 ~~~l~~~l~~~Gv--~i~~~~~v~~i~~~~~-~~~~V~~~~G~~i~~d~vi~a~G--~~p~~~ 346 (551)
.+.+.+..++.|+ .++++++|++++.+++ +...|++.+|+++.+|.||+|+| ..|+..
T Consensus 90 ~~yl~~~~~~~~l~~~i~~~~~V~~~~~~~~~~~w~V~~~~G~~~~ad~lV~AtG~~s~p~~p 152 (545)
T 3uox_A 90 LRYVNRAADAMDVRKHYRFNTRVTAARYVENDRLWEVTLDNEEVVTCRFLISATGPLSASRMP 152 (545)
T ss_dssp HHHHHHHHHHHTCGGGEECSCCEEEEEEEGGGTEEEEEETTTEEEEEEEEEECCCSCBC---C
T ss_pred HHHHHHHHHHcCCcCcEEECCEEEEEEEeCCCCEEEEEECCCCEEEeCEEEECcCCCCCCcCC
Confidence 6777778888888 7899999999987554 34789999999999999999999 555543
|
| >4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A* | Back alignment and structure |
|---|
Probab=98.21 E-value=7.9e-06 Score=80.37 Aligned_cols=99 Identities=19% Similarity=0.162 Sum_probs=77.7
Q ss_pred eEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCcc----------------CCCC-----CHHHHHHHHHHHHhcCcEEEc
Q 008860 247 KIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKV----------------LRGF-----DEDIRDFVAEQMSLRGIEFHT 305 (551)
Q Consensus 247 ~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~----------------l~~~-----~~~~~~~l~~~l~~~Gv~i~~ 305 (551)
.|+|||+|+.|+.+|..+++.|.+|+++++.... .+.+ .+++.+.+.+.+++.++++..
T Consensus 6 DvvIIG~GpAGl~AA~~la~~g~~v~liE~~~~gg~~~~G~~~~~~~i~~~~g~~~~i~~~~l~~~~~~~~~~~~~~~~~ 85 (314)
T 4a5l_A 6 DVVIIGSGPAAHTAAIYLGRSSLKPVMYEGFMAGGVAAGGQLTTTTIIENFPGFPNGIDGNELMMNMRTQSEKYGTTIIT 85 (314)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCCEEECCSSGGGCCTTCGGGGSSEECCSTTCTTCEEHHHHHHHHHHHHHHTTCEEEC
T ss_pred cEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcccCCCcCChHHhhhccCCcccCCHHHHHHHHHHHHhhcCcEEEE
Confidence 6999999999999999999999999999875420 0111 245677788888899999887
Q ss_pred CcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCcCCCCCC
Q 008860 306 EESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNTKN 347 (551)
Q Consensus 306 ~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~~~~ 347 (551)
. .+..+....+. ..+.+.++.++.+|.+|+|||.+|....
T Consensus 86 ~-~v~~~~~~~~~-~~~~~~~~~~~~~~~liiATG~~~~~~~ 125 (314)
T 4a5l_A 86 E-TIDHVDFSTQP-FKLFTEEGKEVLTKSVIIATGATAKRMH 125 (314)
T ss_dssp C-CEEEEECSSSS-EEEEETTCCEEEEEEEEECCCEEECCCC
T ss_pred e-EEEEeecCCCc-eEEEECCCeEEEEeEEEEcccccccccC
Confidence 6 56666555544 6677888889999999999999887543
|
| >3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA, GIDA; tRNA modification, FAD binding domain, structural genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A | Back alignment and structure |
|---|
Probab=98.21 E-value=1e-05 Score=86.59 Aligned_cols=99 Identities=15% Similarity=0.164 Sum_probs=77.6
Q ss_pred CeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCc-cC-----------------------CC------------------
Q 008860 246 EKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKK-VL-----------------------RG------------------ 283 (551)
Q Consensus 246 ~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~-~l-----------------------~~------------------ 283 (551)
-.|+|||+|..|+++|..+++.|.+|.++++... +. ..
T Consensus 29 yDVIVIGgG~AGl~AAlaLAr~G~kVlLIEk~~~~iG~~~Cnps~ggia~~~lv~ei~algg~~~~~~d~~gi~f~~l~~ 108 (651)
T 3ces_A 29 FDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEVDALGGLMAKAIDQAGIQFRILNA 108 (651)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCSSSSEEESTTHHHHHHHHHHTTCSHHHHHHHHEEEEEEEST
T ss_pred CCEEEECChHHHHHHHHHHHhCCCCEEEEeecccccccccccccccchhhHHHHHHHHHhccHHHHHhhhcccchhhhhc
Confidence 4799999999999999999999999999998631 10 00
Q ss_pred ------------CC-HHHHHHHHHHHHh-cCcEEEcCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCcCCCC
Q 008860 284 ------------FD-EDIRDFVAEQMSL-RGIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNT 345 (551)
Q Consensus 284 ------------~~-~~~~~~l~~~l~~-~Gv~i~~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~~ 345 (551)
.+ ..+...+.+.+++ .|++++ +++|+++..+++.+..|.+.+|.++.+|.||+|+|..+..
T Consensus 109 ~kgpav~~~r~~~Dr~~~~~~L~e~Le~~~GV~I~-~~~V~~L~~e~g~V~GV~t~dG~~I~Ad~VVLATGt~s~~ 183 (651)
T 3ces_A 109 SKGPAVRATRAQADRVLYRQAVRTALENQPNLMIF-QQAVEDLIVENDRVVGAVTQMGLKFRAKAVVLTVGTFLDG 183 (651)
T ss_dssp TSCGGGCEEEEEECHHHHHHHHHHHHHTCTTEEEE-ECCEEEEEESSSBEEEEEETTSEEEEEEEEEECCSTTTCC
T ss_pred ccCcccccchhhCCHHHHHHHHHHHHHhCCCCEEE-EEEEEEEEecCCEEEEEEECCCCEEECCEEEEcCCCCccC
Confidence 01 1345566777777 699994 6799999877666567889899889999999999987643
|
| >1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ... | Back alignment and structure |
|---|
Probab=98.20 E-value=1.3e-05 Score=81.68 Aligned_cols=32 Identities=25% Similarity=0.335 Sum_probs=30.5
Q ss_pred CccEEEECCChHHHHHHHHHHhCCCcEEEEcc
Q 008860 72 DFDLFTIGAGSGGVRASRFAANFGASVAICEL 103 (551)
Q Consensus 72 ~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~ 103 (551)
++||+|||||++|+++|..|++.|++|+|+|+
T Consensus 2 ~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~ 33 (394)
T 1k0i_A 2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILER 33 (394)
T ss_dssp BCSEEEECCSHHHHHHHHHHHHHTCCEEEECS
T ss_pred CccEEEECCCHHHHHHHHHHHHCCCCEEEEeC
Confidence 48999999999999999999999999999993
|
| >3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans} | Back alignment and structure |
|---|
Probab=98.19 E-value=3.5e-06 Score=86.73 Aligned_cols=98 Identities=20% Similarity=0.190 Sum_probs=77.5
Q ss_pred CeEEEEcCcHHHHHHHHHHHhCCCe--EEEEeecCccC------C-C------CCHHHHHHHHHHHHhcCcEEEcCcccE
Q 008860 246 EKIAIVGGGYIALEFAGIFSGLTSE--VHVFIRQKKVL------R-G------FDEDIRDFVAEQMSLRGIEFHTEESPQ 310 (551)
Q Consensus 246 ~~vvViG~G~~g~e~a~~l~~~g~~--Vtlv~~~~~~l------~-~------~~~~~~~~l~~~l~~~Gv~i~~~~~v~ 310 (551)
.+|+|||+|+.|+.+|..|++.|.+ |+++++.+.+. . . ....+.....+.+++.|++++.++++.
T Consensus 10 ~~vvIIGaG~aGl~aA~~L~~~g~~~~V~lie~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~ 89 (415)
T 3lxd_A 10 ADVVIVGAGHGGAQAAIALRQNGFEGRVLVIGREPEIPYERPPLSKEYLAREKTFERICIRPAQFWEDKAVEMKLGAEVV 89 (415)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCSCEEEEESSSSCCBCSGGGGTTTTTTSSCSGGGBSSCHHHHHHTTEEEEETCCEE
T ss_pred CcEEEECChHHHHHHHHHHHccCcCCCEEEEecCCCCCcCcccCCHHHHcCCCCHHHhccCCHHHHHHCCcEEEeCCEEE
Confidence 5899999999999999999999987 99999876421 0 0 112222334567788999999999999
Q ss_pred EEEEcCCceEEEEECCCeEEEeeEEEEecCcCCCCC
Q 008860 311 AILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNTK 346 (551)
Q Consensus 311 ~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~~~ 346 (551)
.++.+.. .|.+.+|+.+.+|.+|+|||..|...
T Consensus 90 ~id~~~~---~v~~~~g~~~~~d~lvlAtG~~~~~~ 122 (415)
T 3lxd_A 90 SLDPAAH---TVKLGDGSAIEYGKLIWATGGDPRRL 122 (415)
T ss_dssp EEETTTT---EEEETTSCEEEEEEEEECCCEECCCC
T ss_pred EEECCCC---EEEECCCCEEEeeEEEEccCCccCCC
Confidence 9976543 47888998999999999999988764
|
| >4gde_A UDP-galactopyranose mutase; flavin adenine dinucleotide binding, nucleotide binding, MUT isomerase; HET: FDA; 2.20A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 4gdc_A* 4gdd_A* 3utf_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A* | Back alignment and structure |
|---|
Probab=98.18 E-value=7.2e-07 Score=94.49 Aligned_cols=53 Identities=15% Similarity=0.172 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCc
Q 008860 286 EDIRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGR 341 (551)
Q Consensus 286 ~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~ 341 (551)
..+.+.+.+.+++.|++++++++|++|..+++. +++.+|+++.+|.||+++..
T Consensus 222 ~~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~~---v~~~~G~~~~ad~vI~t~P~ 274 (513)
T 4gde_A 222 GGIWIAVANTLPKEKTRFGEKGKVTKVNANNKT---VTLQDGTTIGYKKLVSTMAV 274 (513)
T ss_dssp HHHHHHHHHTSCGGGEEESGGGCEEEEETTTTE---EEETTSCEEEEEEEEECSCH
T ss_pred HHHHHHHHHHHHhcCeeeecceEEEEEEccCCE---EEEcCCCEEECCEEEECCCH
Confidence 456677888888999999999999999876643 67899999999999998754
|
| >3g5s_A Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase TRMFO; tRNA methyltransferase FAD folate, FAD, flavoprotein; HET: MSE FAD GSH; 1.05A {Thermus thermophilus} PDB: 3g5q_A* 3g5r_A* | Back alignment and structure |
|---|
Probab=98.15 E-value=2.4e-06 Score=85.06 Aligned_cols=32 Identities=25% Similarity=0.340 Sum_probs=30.3
Q ss_pred CccEEEECCChHHHHHHHHHHhCCCcEEEEcc
Q 008860 72 DFDLFTIGAGSGGVRASRFAANFGASVAICEL 103 (551)
Q Consensus 72 ~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~ 103 (551)
++||+|||||+||+.||+.|++.|.+|+|||+
T Consensus 1 m~dViVIGgG~AG~~AA~~la~~G~~V~liE~ 32 (443)
T 3g5s_A 1 MERVNVVGAGLAGSEAAWTLLRLGVPVRLFEM 32 (443)
T ss_dssp CCCEEEECCSHHHHHHHHHHHHTTCCEEEECC
T ss_pred CCCEEEECchHHHHHHHHHHHHCCCcEEEEec
Confidence 37999999999999999999999999999994
|
| >3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.13 E-value=3.6e-06 Score=87.59 Aligned_cols=98 Identities=23% Similarity=0.368 Sum_probs=71.3
Q ss_pred CeEEEEcCcHHHHHHHHHHHhC--CCeEEEEeecCccC------CCC------CHHHHHHHHHHH-HhcCcEEEcCcccE
Q 008860 246 EKIAIVGGGYIALEFAGIFSGL--TSEVHVFIRQKKVL------RGF------DEDIRDFVAEQM-SLRGIEFHTEESPQ 310 (551)
Q Consensus 246 ~~vvViG~G~~g~e~a~~l~~~--g~~Vtlv~~~~~~l------~~~------~~~~~~~l~~~l-~~~Gv~i~~~~~v~ 310 (551)
++|+|||+|+.|+.+|..|++. +.+|+++++.+.+. +.+ ..++.....+.+ ++.|++++.+++|+
T Consensus 4 ~~VvIIGgG~aGl~aA~~L~~~~~~~~V~vie~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~gi~v~~~~~v~ 83 (449)
T 3kd9_A 4 KKVVIIGGGAAGMSAASRVKRLKPEWDVKVFEATEWVSHAPCGIPYVVEGLSTPDKLMYYPPEVFIKKRGIDLHLNAEVI 83 (449)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSSCCC------------------------CTHHHHTTCEEETTCEEE
T ss_pred CcEEEECCcHHHHHHHHHHHHhCcCCCEEEEECCCccccCCcCCccccCCCCCHHHhhhcCHHHHHHhcCcEEEecCEEE
Confidence 6899999999999999999988 78999999987531 110 011111122333 67899999999999
Q ss_pred EEEEcCCceEEEEECCCe-EEEeeEEEEecCcCCCCC
Q 008860 311 AILKSTDGSLSVKTNKGT-VDGFSHVMFATGRRPNTK 346 (551)
Q Consensus 311 ~i~~~~~~~~~V~~~~G~-~i~~d~vi~a~G~~p~~~ 346 (551)
.++.+. ..|.+.+++ ++.+|.+|+|||.+|...
T Consensus 84 ~i~~~~---~~v~~~~g~~~~~~d~lviAtG~~p~~p 117 (449)
T 3kd9_A 84 EVDTGY---VRVRENGGEKSYEWDYLVFANGASPQVP 117 (449)
T ss_dssp EECSSE---EEEECSSSEEEEECSEEEECCCEEECCC
T ss_pred EEecCC---CEEEECCceEEEEcCEEEECCCCCCCCC
Confidence 985432 557777774 799999999999988654
|
| >2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G* 3cpi_G 3cph_G 3cpj_G* | Back alignment and structure |
|---|
Probab=98.13 E-value=1.9e-06 Score=89.78 Aligned_cols=59 Identities=17% Similarity=0.047 Sum_probs=49.3
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCcccEEEEEc--CCceEEEEECCCeEEEeeEEEEecCcCCC
Q 008860 285 DEDIRDFVAEQMSLRGIEFHTEESPQAILKS--TDGSLSVKTNKGTVDGFSHVMFATGRRPN 344 (551)
Q Consensus 285 ~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~--~~~~~~V~~~~G~~i~~d~vi~a~G~~p~ 344 (551)
...+.+.+.+.+++.|++++++++|++|..+ +++...|.+ +|+++.||.||+|+|..|.
T Consensus 241 ~~~l~~al~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~~V~~-~g~~~~ad~VV~a~~~~~~ 301 (453)
T 2bcg_G 241 LGELPQGFARLSAIYGGTYMLDTPIDEVLYKKDTGKFEGVKT-KLGTFKAPLVIADPTYFPE 301 (453)
T ss_dssp TTHHHHHHHHHHHHTTCEEECSCCCCEEEEETTTTEEEEEEE-TTEEEECSCEEECGGGCGG
T ss_pred HHHHHHHHHHHHHHcCCEEECCCEEEEEEEECCCCeEEEEEE-CCeEEECCEEEECCCccch
Confidence 3478888999999999999999999999887 555445666 5788999999999998764
|
| >1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ... | Back alignment and structure |
|---|
Probab=98.13 E-value=9.1e-06 Score=82.88 Aligned_cols=100 Identities=13% Similarity=0.111 Sum_probs=77.8
Q ss_pred CeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCcc------CC-------------------------------------
Q 008860 246 EKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKV------LR------------------------------------- 282 (551)
Q Consensus 246 ~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~------l~------------------------------------- 282 (551)
.+|+|||+|+.|+.+|..|++.|.+|+++++.+.. ..
T Consensus 3 ~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~g~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~ 82 (394)
T 1k0i_A 3 TQVAIIGAGPSGLLLGQLLHKAGIDNVILERQTPDYVLGRIRAGVLEQGMVDLLREAGVDRRMARDGLVHEGVEIAFAGQ 82 (394)
T ss_dssp CSEEEECCSHHHHHHHHHHHHHTCCEEEECSSCHHHHHTCCCCCEECHHHHHHHHHTTCCHHHHHHCEEESCEEEEETTE
T ss_pred ccEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCcccCCCceEeECHHHHHHHHHcCCcHHHHhcCCccceEEEEECCc
Confidence 36999999999999999999999999999987631 00
Q ss_pred -----------C-----CC-HHHHHHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEE-CCCe--EEEeeEEEEecCcC
Q 008860 283 -----------G-----FD-EDIRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKT-NKGT--VDGFSHVMFATGRR 342 (551)
Q Consensus 283 -----------~-----~~-~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~-~~G~--~i~~d~vi~a~G~~ 342 (551)
. ++ ..+.+.+.+.+.+.|++++++++|++++.++++.+.|++ .+|+ ++.+|.||.|.|..
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~~g~~~~~~a~~vV~AdG~~ 162 (394)
T 1k0i_A 83 RRRIDLKRLSGGKTVTVYGQTEVTRDLMEAREACGATTVYQAAEVRLHDLQGERPYVTFERDGERLRLDCDYIAGCDGFH 162 (394)
T ss_dssp EEEECHHHHHTSCCEEECCHHHHHHHHHHHHHHTTCEEESSCEEEEEECTTSSSCEEEEEETTEEEEEECSEEEECCCTT
T ss_pred eEEeccccccCCCceEEechHHHHHHHHHHHHhcCCeEEeceeEEEEEEecCCceEEEEecCCcEEEEEeCEEEECCCCC
Confidence 0 01 234455666777789999999999999875432256776 6887 79999999999998
Q ss_pred CCC
Q 008860 343 PNT 345 (551)
Q Consensus 343 p~~ 345 (551)
+..
T Consensus 163 S~v 165 (394)
T 1k0i_A 163 GIS 165 (394)
T ss_dssp CST
T ss_pred cHH
Confidence 765
|
| >2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG; modification, 5-carboxymethylaminomethyl uridine, WOBB uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB: 2zxh_A* 2e57_A* | Back alignment and structure |
|---|
Probab=98.12 E-value=1.9e-05 Score=84.19 Aligned_cols=99 Identities=19% Similarity=0.288 Sum_probs=77.4
Q ss_pred CeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCc-cC-----------------------CC------------------
Q 008860 246 EKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKK-VL-----------------------RG------------------ 283 (551)
Q Consensus 246 ~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~-~l-----------------------~~------------------ 283 (551)
-.|+|||+|..|+++|..+++.|.+|.++++... +. ..
T Consensus 28 yDVIVIGgG~AGl~AAlalAr~G~kVlLIEk~~~~iG~~~Cnps~GGia~g~lv~eldalgg~~~~~~d~~gi~f~~l~~ 107 (637)
T 2zxi_A 28 FDVVVIGGGHAGIEAALAAARMGAKTAMFVLNADTIGQMSCNPAIGGIAKGIVVREIDALGGEMGKAIDQTGIQFKMLNT 107 (637)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCCSCSEEECTTHHHHHHHHHHHTCSHHHHHHHHEEEEEEEST
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEEecccccCCcCccccccccchHHHHHHHHHhhhHHHHHhhhcccceeeccc
Confidence 4799999999999999999999999999998631 10 00
Q ss_pred ------------CC-HHHHHHHHHHHHh-cCcEEEcCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCcCCCC
Q 008860 284 ------------FD-EDIRDFVAEQMSL-RGIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNT 345 (551)
Q Consensus 284 ------------~~-~~~~~~l~~~l~~-~Gv~i~~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~~ 345 (551)
.+ ..+.+.+.+.+++ .|++++ ++.|+++..+++.+..|.+.+|+++.+|.||+|+|..++.
T Consensus 108 ~kGpav~~~r~~~Dr~~~~~~L~~~Le~~~GVeI~-~~~Vt~L~~e~g~V~GV~t~dG~~i~AdaVVLATG~~s~~ 182 (637)
T 2zxi_A 108 RKGKAVQSPRAQADKKRYREYMKKVCENQENLYIK-QEEVVDIIVKNNQVVGVRTNLGVEYKTKAVVVTTGTFLNG 182 (637)
T ss_dssp TSCGGGCEEEEEECHHHHHHHHHHHHHTCTTEEEE-ESCEEEEEESSSBEEEEEETTSCEEECSEEEECCTTCBTC
T ss_pred ccCccccchhhhCCHHHHHHHHHHHHHhCCCCEEE-EeEEEEEEecCCEEEEEEECCCcEEEeCEEEEccCCCccC
Confidence 00 1244556677777 599995 6799999887766567899999899999999999987654
|
| >1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD BCN; 2.25A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.12 E-value=1.7e-06 Score=88.50 Aligned_cols=46 Identities=28% Similarity=0.416 Sum_probs=39.6
Q ss_pred CCCCCccEEEECCChHHHHHHHHHHhC-CCcEEEEccCCCCCCCCCCCCCCCeecc
Q 008860 68 PSHYDFDLFTIGAGSGGVRASRFAANF-GASVAICELPFSTISSETTGGVGGTCVL 122 (551)
Q Consensus 68 ~~~~~~dVvIIGgG~aGl~aA~~l~~~-G~~V~liE~~~~~~~~~~~~~~GG~~~~ 122 (551)
+|+.++||+|||||++|++||..|++. |++|+|+|+ ...+||.|..
T Consensus 3 ~m~~~~~v~IiGaG~~Gl~aA~~L~~~~g~~v~v~E~---------~~~~GG~~~~ 49 (399)
T 1v0j_A 3 PMTARFDLFVVGSGFFGLTIAERVATQLDKRVLVLER---------RPHIGGNAYS 49 (399)
T ss_dssp -CCCSCSEEEECCSHHHHHHHHHHHHHSCCCEEEECS---------SSSSSGGGCE
T ss_pred cccccCCEEEECCCHHHHHHHHHHHHhCCCCEEEEeC---------CCCCCCeeee
Confidence 355579999999999999999999998 999999994 5678888753
|
| >3cp8_A TRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA; rossmann fold, FAD-binding domain, dinucleotide-binding motif; HET: FAD; 3.20A {Chlorobium tepidum} | Back alignment and structure |
|---|
Probab=98.11 E-value=2.2e-05 Score=83.94 Aligned_cols=99 Identities=14% Similarity=0.125 Sum_probs=76.4
Q ss_pred CCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccC------------------------CC-----------------
Q 008860 245 PEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVL------------------------RG----------------- 283 (551)
Q Consensus 245 ~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l------------------------~~----------------- 283 (551)
.-.|+|||+|..|+++|..+++.|.+|.++++.+..+ ..
T Consensus 21 ~yDVIVIGgG~AGl~AAlaLAr~G~kVlLIEk~~~~iG~~~c~ps~gGia~~~lv~el~al~g~~~~~~d~~gi~f~~l~ 100 (641)
T 3cp8_A 21 MYDVIVVGAGHAGCEAALAVARGGLHCLLITSDLSAVARMSCNPAIGGVAKGQITREIDALGGEMGKAIDATGIQFRMLN 100 (641)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCSSCSEEECHHHHHHHHHHHHHTCSHHHHHHHHEEEEEEEC
T ss_pred cCCEEEECccHHHHHHHHHHHHCCCcEEEEEecccccCCCccccchhhhhHHHHHHHHHhcccHHHHHHHhcCCchhhcc
Confidence 3589999999999999999999999999999863100 00
Q ss_pred -------------CC-HHHHHHHHHHHHhc-CcEEEcCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCcCCC
Q 008860 284 -------------FD-EDIRDFVAEQMSLR-GIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPN 344 (551)
Q Consensus 284 -------------~~-~~~~~~l~~~l~~~-Gv~i~~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~ 344 (551)
.+ ..+...+.+.+++. |++++. ..|+++..+++.+..|.+.+|+++.+|.||+|+|..++
T Consensus 101 ~~kgpav~~~r~~~Dr~~l~~~L~~~l~~~~GV~I~~-~~V~~L~~d~g~V~GV~t~~G~~i~Ad~VVLATG~~s~ 175 (641)
T 3cp8_A 101 RSKGPAMHSPRAQADKTQYSLYMRRIVEHEPNIDLLQ-DTVIGVSANSGKFSSVTVRSGRAIQAKAAILACGTFLN 175 (641)
T ss_dssp SSSCTTTCEEEEEECHHHHHHHHHHHHHTCTTEEEEE-CCEEEEEEETTEEEEEEETTSCEEEEEEEEECCTTCBT
T ss_pred cccCccccchhhhcCHHHHHHHHHHHHHhCCCCEEEe-eEEEEEEecCCEEEEEEECCCcEEEeCEEEECcCCCCC
Confidence 01 13455666777774 999964 58999887666644588899989999999999998755
|
| >3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=98.10 E-value=3.7e-06 Score=87.59 Aligned_cols=100 Identities=16% Similarity=0.222 Sum_probs=75.1
Q ss_pred CeEEEEcCcHHHHHHHHHHHhC--CCeEEEEeecCccC--CC-C----CH------HHHHHHHHHHHhcCcEEEcCcccE
Q 008860 246 EKIAIVGGGYIALEFAGIFSGL--TSEVHVFIRQKKVL--RG-F----DE------DIRDFVAEQMSLRGIEFHTEESPQ 310 (551)
Q Consensus 246 ~~vvViG~G~~g~e~a~~l~~~--g~~Vtlv~~~~~~l--~~-~----~~------~~~~~l~~~l~~~Gv~i~~~~~v~ 310 (551)
++|+|||+|+.|+.+|..|++. |.+|+++++.+.+. +. . .. ++.....+.+++.|++++.+++|.
T Consensus 3 ~~VvIIGgG~AGl~aA~~L~~~~~g~~V~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~V~ 82 (452)
T 3oc4_A 3 LKIVIIGASFAGISAAIASRKKYPQAEISLIDKQATVGYLSGGLSAYFNHTINELHEARYITEEELRRQKIQLLLNREVV 82 (452)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCSSSEEEEECSSSCCSSCCC----------------CCCCHHHHHHTTEEEECSCEEE
T ss_pred CCEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCCcccCccchhhhcCCCCCHHHhhcCCHHHHHHCCCEEEECCEEE
Confidence 5899999999999999999998 89999999887542 10 0 01 111113467788999999999999
Q ss_pred EEEEcCCceEEEEE-CCCeEEEeeEEEEecCcCCCCC
Q 008860 311 AILKSTDGSLSVKT-NKGTVDGFSHVMFATGRRPNTK 346 (551)
Q Consensus 311 ~i~~~~~~~~~V~~-~~G~~i~~d~vi~a~G~~p~~~ 346 (551)
+++.+.+. +.+.. .+++++.+|.+|+|||.+|...
T Consensus 83 ~id~~~~~-v~v~~~~~~~~~~~d~lviAtG~~p~~p 118 (452)
T 3oc4_A 83 AMDVENQL-IAWTRKEEQQWYSYDKLILATGASQFST 118 (452)
T ss_dssp EEETTTTE-EEEEETTEEEEEECSEEEECCCCCBCCC
T ss_pred EEECCCCE-EEEEecCceEEEEcCEEEECCCcccCCC
Confidence 99876554 54542 3456799999999999988764
|
| >2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2 | Back alignment and structure |
|---|
Probab=98.09 E-value=6.8e-06 Score=84.00 Aligned_cols=32 Identities=19% Similarity=0.297 Sum_probs=30.6
Q ss_pred CccEEEECCChHHHHHHHHHHhCCCcEEEEcc
Q 008860 72 DFDLFTIGAGSGGVRASRFAANFGASVAICEL 103 (551)
Q Consensus 72 ~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~ 103 (551)
.+||+|||||++|+++|..|++.|++|+|+|+
T Consensus 5 ~~~V~IVGaG~aGl~~A~~L~~~G~~v~v~E~ 36 (397)
T 2vou_A 5 TDRIAVVGGSISGLTAALMLRDAGVDVDVYER 36 (397)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEECS
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCCEEEEec
Confidence 58999999999999999999999999999994
|
| >4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=98.09 E-value=2.5e-05 Score=76.76 Aligned_cols=98 Identities=18% Similarity=0.123 Sum_probs=74.5
Q ss_pred eEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCc---c--------CCC----CCHHHHHHHHHHHHhcCcEEEcCcccEE
Q 008860 247 KIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKK---V--------LRG----FDEDIRDFVAEQMSLRGIEFHTEESPQA 311 (551)
Q Consensus 247 ~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~---~--------l~~----~~~~~~~~l~~~l~~~Gv~i~~~~~v~~ 311 (551)
.|+|||+|+.|+.+|..+++.|.+|+++++... + ++. ..+++.....+...+.+..+..+..+..
T Consensus 8 DvvIIG~GpAGl~aA~~l~~~g~~V~liE~~~~gG~~~~~~~i~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (312)
T 4gcm_A 8 DIAIIGAGPAGMTAAVYASRANLKTVMIERGIPGGQMANTEEVENFPGFEMITGPDLSTKMFEHAKKFGAVYQYGDIKSV 87 (312)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEEESSCTTGGGGGCSCBCCSTTCSSBCHHHHHHHHHHHHHHTTCEEEECCCCEE
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCeeecccccCCcCCccccchHHHHHHHHHHHhhccccccceeeeee
Confidence 689999999999999999999999999987531 1 111 1246666677778888888888866666
Q ss_pred EEEcCCceEEEEECCCeEEEeeEEEEecCcCCCCCC
Q 008860 312 ILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNTKN 347 (551)
Q Consensus 312 i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~~~~ 347 (551)
..... ..+...+++++.+|.+|+|||.+|....
T Consensus 88 ~~~~~---~~~~~~~~~~~~~d~liiAtGs~~~~~~ 120 (312)
T 4gcm_A 88 EDKGE---YKVINFGNKELTAKAVIIATGAEYKKIG 120 (312)
T ss_dssp EECSS---CEEEECSSCEEEEEEEEECCCEEECCCC
T ss_pred eeeec---ceeeccCCeEEEeceeEEcccCccCcCC
Confidence 55433 2355667788999999999999887543
|
| >3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A* | Back alignment and structure |
|---|
Probab=98.08 E-value=2e-05 Score=81.99 Aligned_cols=100 Identities=15% Similarity=0.049 Sum_probs=77.7
Q ss_pred CeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCC-----C-------------------------------------
Q 008860 246 EKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLR-----G------------------------------------- 283 (551)
Q Consensus 246 ~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~-----~------------------------------------- 283 (551)
-+|+|||+|+.|+.+|..|++.|.+|+++++.+.... .
T Consensus 7 ~dVvIVGaG~aGl~aA~~La~~G~~V~vlE~~~~~~~g~~~~g~~l~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (453)
T 3atr_A 7 YDVLIIGGGFAGSSAAYQLSRRGLKILLVDSKPWNRIGDKPCGDAVSKAHFDKLGMPYPKGEELENKINGIKLYSPDMQT 86 (453)
T ss_dssp CSEEEECCSHHHHHHHHHHSSSSCCEEEECSSCGGGTTCSCCCCEEEHHHHHHTTCCCCCGGGEEEEEEEEEEECTTSSC
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCCcccccccccHHHHHHhcCCCCchHHHHhhhcceEEECCCCce
Confidence 3699999999999999999999999999998653210 0
Q ss_pred ----------CC-HHHHHHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEEC---CCe--EEEeeEEEEecCcCCCC
Q 008860 284 ----------FD-EDIRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTN---KGT--VDGFSHVMFATGRRPNT 345 (551)
Q Consensus 284 ----------~~-~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~---~G~--~i~~d~vi~a~G~~p~~ 345 (551)
++ ..+.+.+.+.+++.|++++.+++|+++..+++.+..|++. +|+ ++.+|.||.|+|..+..
T Consensus 87 ~~~~~~~~~~i~r~~l~~~L~~~a~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~G~~~~~~ad~VV~AdG~~s~v 164 (453)
T 3atr_A 87 VWTVNGEGFELNAPLYNQRVLKEAQDRGVEIWDLTTAMKPIFEDGYVKGAVLFNRRTNEELTVYSKVVVEATGYSRSF 164 (453)
T ss_dssp EEEEEEEEEEECHHHHHHHHHHHHHHTTCEEESSEEEEEEEEETTEEEEEEEEETTTTEEEEEECSEEEECCGGGCTT
T ss_pred EEeECCCcEEEcHHHHHHHHHHHHHHcCCEEEeCcEEEEEEEECCEEEEEEEEEcCCCceEEEEcCEEEECcCCchhh
Confidence 00 1345566777778899999999999998876653335553 676 79999999999998754
|
| >4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens} | Back alignment and structure |
|---|
Probab=98.07 E-value=2.5e-05 Score=79.76 Aligned_cols=99 Identities=11% Similarity=0.098 Sum_probs=74.4
Q ss_pred eEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCCC-------CCHHHHH-----------------------------
Q 008860 247 KIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRG-------FDEDIRD----------------------------- 290 (551)
Q Consensus 247 ~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~~-------~~~~~~~----------------------------- 290 (551)
+|+|||+|+.|+-+|..|++.|.+|+++++.+.+... +.+...+
T Consensus 3 ~V~IVGaGpaGl~~A~~L~~~G~~v~v~Er~~~~~~~~~G~~i~l~~~~~~~L~~lg~~~~~~~~~~~~~~~~~~~~~~~ 82 (412)
T 4hb9_A 3 HVGIIGAGIGGTCLAHGLRKHGIKVTIYERNSAASSILPGYGIHINSFGKQALQECLPAENWLAFEEASRYIGGQSRFYN 82 (412)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCEEEEECSSCSSCSSCCCCEEEECHHHHHHHHHHSCHHHHHHHHHHCEEECCCCEEEC
T ss_pred EEEEECcCHHHHHHHHHHHhCCCCEEEEecCCCCCcCCCceEEeeCHHHHHHHHHcCChHHHHHhhhhhcccCcceeEec
Confidence 7999999999999999999999999999986543211 1111111
Q ss_pred ------------------------------HHHHHHH-hcCcEEEcCcccEEEEEcCCceEEEEECCCeEEEeeEEEEec
Q 008860 291 ------------------------------FVAEQMS-LRGIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFAT 339 (551)
Q Consensus 291 ------------------------------~l~~~l~-~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~ 339 (551)
.+.+.|. ..+..+++++++++++..+++.++|++.||+++++|+||-|-
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~R~~L~~~L~~~~~~~v~~~~~v~~~~~~~~~~v~v~~~dG~~~~adlvVgAD 162 (412)
T 4hb9_A 83 ERMRLLAVHGGISPMAGKIISEQRLSISRTELKEILNKGLANTIQWNKTFVRYEHIENGGIKIFFADGSHENVDVLVGAD 162 (412)
T ss_dssp TTSCEEEC--------------CEEEEEHHHHHHHHHTTCTTTEECSCCEEEEEECTTSCEEEEETTSCEEEESEEEECC
T ss_pred CCcceecccCCccccccccccccceEeeHHHHHHHHHhhccceEEEEEEEEeeeEcCCCeEEEEECCCCEEEeeEEEECC
Confidence 1223332 235568889999999887666588999999999999999999
Q ss_pred CcCCCC
Q 008860 340 GRRPNT 345 (551)
Q Consensus 340 G~~p~~ 345 (551)
|.+...
T Consensus 163 G~~S~v 168 (412)
T 4hb9_A 163 GSNSKV 168 (412)
T ss_dssp CTTCHH
T ss_pred CCCcch
Confidence 987643
|
| >2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A* | Back alignment and structure |
|---|
Probab=98.05 E-value=7e-06 Score=84.27 Aligned_cols=99 Identities=13% Similarity=0.194 Sum_probs=74.0
Q ss_pred CCeEEEEcCcHHHHHHHHHHHhCCC--eEEEEeecCccCC---CCCHHHHHH-H-----HHHHHhcCcEEEcCcccEEEE
Q 008860 245 PEKIAIVGGGYIALEFAGIFSGLTS--EVHVFIRQKKVLR---GFDEDIRDF-V-----AEQMSLRGIEFHTEESPQAIL 313 (551)
Q Consensus 245 ~~~vvViG~G~~g~e~a~~l~~~g~--~Vtlv~~~~~~l~---~~~~~~~~~-l-----~~~l~~~Gv~i~~~~~v~~i~ 313 (551)
..+++|||+|+.|+.+|..|++.|. +|+++++.+.+.- .+...+... . .+.+++.|++++.+++|+.++
T Consensus 7 ~~~vvIIG~G~aGl~aA~~l~~~g~~~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~i~ 86 (408)
T 2gqw_A 7 KAPVVVLGAGLASVSFVAELRQAGYQGLITVVGDEAERPYDRPPLSKDFMAHGDAEKIRLDCKRAPEVEWLLGVTAQSFD 86 (408)
T ss_dssp CSSEEEECCSHHHHHHHHHHHHHTCCSCEEEEESSCSCCBCSGGGGTHHHHHCCGGGSBCCCTTSCSCEEEETCCEEEEE
T ss_pred CCcEEEECChHHHHHHHHHHHccCCCCeEEEEECCCCCcccCCCCCHHHhCCCchhhhhHHHHHHCCCEEEcCCEEEEEE
Confidence 3579999999999999999999987 5999998765321 111111100 0 003567799999999999997
Q ss_pred EcCCceEEEEECCCeEEEeeEEEEecCcCCCCC
Q 008860 314 KSTDGSLSVKTNKGTVDGFSHVMFATGRRPNTK 346 (551)
Q Consensus 314 ~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~~~ 346 (551)
.+.. .|.+.+|+++.+|.+|+|||.+|...
T Consensus 87 ~~~~---~v~~~~g~~~~~d~lviAtG~~~~~~ 116 (408)
T 2gqw_A 87 PQAH---TVALSDGRTLPYGTLVLATGAAPRAL 116 (408)
T ss_dssp TTTT---EEEETTSCEEECSEEEECCCEEECCC
T ss_pred CCCC---EEEECCCCEEECCEEEECCCCCCCCC
Confidence 6543 47778888899999999999988764
|
| >2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A* | Back alignment and structure |
|---|
Probab=98.04 E-value=1.8e-05 Score=80.84 Aligned_cols=100 Identities=14% Similarity=0.191 Sum_probs=74.6
Q ss_pred CCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCCC-------CCH-H---H-------------------------
Q 008860 245 PEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRG-------FDE-D---I------------------------- 288 (551)
Q Consensus 245 ~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~~-------~~~-~---~------------------------- 288 (551)
..+|+|||+|+.|+.+|..|++.|.+|+++++.+.+... +.+ . +
T Consensus 26 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~g~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~ 105 (398)
T 2xdo_A 26 DKNVAIIGGGPVGLTMAKLLQQNGIDVSVYERDNDREARIFGGTLDLHKGSGQEAMKKAGLLQTYYDLALPMGVNIADEK 105 (398)
T ss_dssp TCEEEEECCSHHHHHHHHHHHTTTCEEEEEECSSSTTCCCCSCCEECCTTTHHHHHHHTTCHHHHHHHCBCCCEEEECSS
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCccccccCCeeeeCCccHHHHHHhcChHHHHHHhhcccceEEECCC
Confidence 358999999999999999999999999999987643110 000 0 0
Q ss_pred ---------------------HHHHHHHHHhc--CcEEEcCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCcCCCC
Q 008860 289 ---------------------RDFVAEQMSLR--GIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNT 345 (551)
Q Consensus 289 ---------------------~~~l~~~l~~~--Gv~i~~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~~ 345 (551)
...+.+.|.+. +++++++++|++++.++++ +.|++.+|+++.+|.||.|.|..+..
T Consensus 106 g~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~-v~v~~~~g~~~~ad~vV~AdG~~S~v 184 (398)
T 2xdo_A 106 GNILSTKNVKPENRFDNPEINRNDLRAILLNSLENDTVIWDRKLVMLEPGKKK-WTLTFENKPSETADLVILANGGMSKV 184 (398)
T ss_dssp SEEEEECCCGGGTTSSCCEECHHHHHHHHHHTSCTTSEEESCCEEEEEECSSS-EEEEETTSCCEEESEEEECSCTTCSC
T ss_pred CCchhhccccccCCCCCceECHHHHHHHHHhhcCCCEEEECCEEEEEEECCCE-EEEEECCCcEEecCEEEECCCcchhH
Confidence 01122222221 3578899999999987766 78999999889999999999998765
|
| >1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A* | Back alignment and structure |
|---|
Probab=98.04 E-value=3.5e-05 Score=82.13 Aligned_cols=97 Identities=19% Similarity=0.188 Sum_probs=74.9
Q ss_pred CeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccC--------C-------------CCC----------------HHH
Q 008860 246 EKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVL--------R-------------GFD----------------EDI 288 (551)
Q Consensus 246 ~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l--------~-------------~~~----------------~~~ 288 (551)
.+|+|||+|+.|+.+|..|++.|.+|+++++.+.+. + .+. +++
T Consensus 17 ~dVvIIGaG~aGl~aA~~L~~~G~~v~iiE~~~~~GG~w~~~~~pg~~~d~~~~~~~~~f~~~~~~~~~~~~~~~~~~~i 96 (542)
T 1w4x_A 17 VDVLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGGVWYWNRYPGARCDIESIEYCYSFSEEVLQEWNWTERYASQPEI 96 (542)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHHCCCTTCBCSSCTTTSSCCSCHHHHHHCCCCBSSCBHHHH
T ss_pred CCEEEECccHHHHHHHHHHHhCCCCEEEEeCCCCCCCcccccCCCceeecccccccccccChhhhhccCcccccCCHHHH
Confidence 379999999999999999999999999999875420 1 011 233
Q ss_pred HHHHHHHHHhcC--cEEEcCcccEEEEEcCC-ceEEEEECCCeEEEeeEEEEecCcC
Q 008860 289 RDFVAEQMSLRG--IEFHTEESPQAILKSTD-GSLSVKTNKGTVDGFSHVMFATGRR 342 (551)
Q Consensus 289 ~~~l~~~l~~~G--v~i~~~~~v~~i~~~~~-~~~~V~~~~G~~i~~d~vi~a~G~~ 342 (551)
.+.+.+..++.+ ++++++++|++++.+++ +...|++.+|+++.+|.||+|+|..
T Consensus 97 ~~yl~~~~~~~~l~~~i~~~~~V~~~~~~~~~~~w~V~~~~G~~~~ad~vV~AtG~~ 153 (542)
T 1w4x_A 97 LRYINFVADKFDLRSGITFHTTVTAAAFDEATNTWTVDTNHGDRIRARYLIMASGQL 153 (542)
T ss_dssp HHHHHHHHHHTTGGGGEECSCCEEEEEEETTTTEEEEEETTCCEEEEEEEEECCCSC
T ss_pred HHHHHHHHHHcCCCceEEcCcEEEEEEEcCCCCeEEEEECCCCEEEeCEEEECcCCC
Confidence 444555555555 67899999999987653 3477889999889999999999964
|
| >2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP} | Back alignment and structure |
|---|
Probab=98.02 E-value=4e-06 Score=84.45 Aligned_cols=43 Identities=28% Similarity=0.387 Sum_probs=38.0
Q ss_pred CCCccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCC-CCCCCeec
Q 008860 70 HYDFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETT-GGVGGTCV 121 (551)
Q Consensus 70 ~~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~-~~~GG~~~ 121 (551)
...+||+|||||++||+||+.|++.|++|+|+|+ . ..+||.|.
T Consensus 42 ~~~~~V~IIGAGiaGL~aA~~L~~~G~~V~VlE~---------~~~~vGGr~~ 85 (376)
T 2e1m_A 42 GPPKRILIVGAGIAGLVAGDLLTRAGHDVTILEA---------NANRVGGRIK 85 (376)
T ss_dssp CSCCEEEEECCBHHHHHHHHHHHHTSCEEEEECS---------CSSCCBTTCC
T ss_pred CCCceEEEECCCHHHHHHHHHHHHCCCcEEEEec---------cccccCCcee
Confidence 3458999999999999999999999999999993 4 57889875
|
| >3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A* | Back alignment and structure |
|---|
Probab=98.02 E-value=9.7e-06 Score=87.41 Aligned_cols=101 Identities=16% Similarity=0.248 Sum_probs=77.5
Q ss_pred CCeEEEEcCcHHHHHHHHHHHhC--CCeEEEEeecCccC----------CC-C-C--HHHHHHHHHHHHhcCcEEEcCcc
Q 008860 245 PEKIAIVGGGYIALEFAGIFSGL--TSEVHVFIRQKKVL----------RG-F-D--EDIRDFVAEQMSLRGIEFHTEES 308 (551)
Q Consensus 245 ~~~vvViG~G~~g~e~a~~l~~~--g~~Vtlv~~~~~~l----------~~-~-~--~~~~~~l~~~l~~~Gv~i~~~~~ 308 (551)
.++|+|||+|+.|+.+|..|++. |.+|+++++.+.+. .. . + ..+...+....++.|++++++++
T Consensus 36 ~~~VvIIGgG~AGl~aA~~L~~~~~g~~V~vie~~~~~~~~~~~lp~~~~g~~~~~~~~~~~~~~~~~~~~gi~v~~~~~ 115 (588)
T 3ics_A 36 SRKIVVVGGVAGGASVAARLRRLSEEDEIIMVERGEYISFANCGLPYYIGGVITERQKLLVQTVERMSKRFNLDIRVLSE 115 (588)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHCSSSEEEEECSSSCSSBCGGGHHHHHTTSSCCGGGGBSSCHHHHHHHTTCEEECSEE
T ss_pred CCCEEEECCcHHHHHHHHHHHhhCcCCCEEEEECCCCccccCCCCchhhcCcCCChHHhhccCHHHHHHhcCcEEEECCE
Confidence 47899999999999999999998 88999999987631 11 1 1 11233455666788999999999
Q ss_pred cEEEEEcCCceEEEEE-CCCe--EEEeeEEEEecCcCCCCC
Q 008860 309 PQAILKSTDGSLSVKT-NKGT--VDGFSHVMFATGRRPNTK 346 (551)
Q Consensus 309 v~~i~~~~~~~~~V~~-~~G~--~i~~d~vi~a~G~~p~~~ 346 (551)
|++++.+++. +.+.. .+|+ .+.+|.+|+|||.+|...
T Consensus 116 V~~id~~~~~-v~v~~~~~g~~~~~~~d~lviAtG~~p~~p 155 (588)
T 3ics_A 116 VVKINKEEKT-ITIKNVTTNETYNEAYDVLILSPGAKPIVP 155 (588)
T ss_dssp EEEEETTTTE-EEEEETTTCCEEEEECSEEEECCCEEECCC
T ss_pred EEEEECCCCE-EEEeecCCCCEEEEeCCEEEECCCCCCCCC
Confidence 9999876554 55544 4565 689999999999988754
|
| >3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens} | Back alignment and structure |
|---|
Probab=98.01 E-value=2.9e-05 Score=82.59 Aligned_cols=97 Identities=16% Similarity=0.170 Sum_probs=77.7
Q ss_pred CeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccC--------------------------------------------
Q 008860 246 EKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVL-------------------------------------------- 281 (551)
Q Consensus 246 ~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l-------------------------------------------- 281 (551)
.+|+|||+|+.|+-+|..|++.|.+|+++++.+...
T Consensus 6 ~dVlIVGaG~aGl~~A~~La~~G~~v~viEr~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~~~~~ 85 (535)
T 3ihg_A 6 VDVLVVGAGLGGLSTAMFLARQGVRVLVVERRPGLSPYPRAAGQNPRTMELLRIGGVADEVVRADDIRGTQGDFVIRLAE 85 (535)
T ss_dssp EEEEEECCSHHHHHHHHHHHTTTCCEEEECSSSSCCCCCCSCCBCHHHHHHHHHTTCHHHHHHSCCSSCTTSCCEEEEES
T ss_pred CcEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCccceECHHHHHHHHHcCCHHHHHhhCCCcccccceeeeEEe
Confidence 479999999999999999999999999999875220
Q ss_pred -------C----C------------------C-CHHHHHHHHHHHHhcCcEEEcCcccEEEEEcCC----ceEEEEECCC
Q 008860 282 -------R----G------------------F-DEDIRDFVAEQMSLRGIEFHTEESPQAILKSTD----GSLSVKTNKG 327 (551)
Q Consensus 282 -------~----~------------------~-~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~----~~~~V~~~~G 327 (551)
. . + ...+.+.+.+.+++.|++++++++|++++.+++ + +.+++.++
T Consensus 86 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~a~~~gv~i~~~~~v~~i~~~~~~~~~~-v~v~~~~~ 164 (535)
T 3ihg_A 86 SVRGEILRTVSESFDDMVAATEPCTPAGWAMLSQDKLEPILLAQARKHGGAIRFGTRLLSFRQHDDDAGAG-VTARLAGP 164 (535)
T ss_dssp SSSSCEEEEEESCHHHHHHTTGGGCSCCCBCCCHHHHHHHHHHHHHHTTCEEESSCEEEEEEEECGGGCSE-EEEEEEET
T ss_pred ccCCceeeeccccccccccccccCCCCcccccCHHHHHHHHHHHHHhCCCEEEeCCEEEEEEECCCCcccc-EEEEEEcC
Confidence 0 0 0 123445567777888999999999999998776 5 77777665
Q ss_pred ---eEEEeeEEEEecCcCC
Q 008860 328 ---TVDGFSHVMFATGRRP 343 (551)
Q Consensus 328 ---~~i~~d~vi~a~G~~p 343 (551)
.++.+|.||.|.|...
T Consensus 165 ~~~~~i~a~~vV~AdG~~S 183 (535)
T 3ihg_A 165 DGEYDLRAGYLVGADGNRS 183 (535)
T ss_dssp TEEEEEEEEEEEECCCTTC
T ss_pred CCeEEEEeCEEEECCCCcc
Confidence 6799999999999865
|
| >2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A* | Back alignment and structure |
|---|
Probab=98.00 E-value=5.1e-06 Score=85.64 Aligned_cols=55 Identities=4% Similarity=-0.038 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCcCC
Q 008860 287 DIRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRP 343 (551)
Q Consensus 287 ~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p 343 (551)
.+.....+..+..+.+++++++|++|..++++ +.|++.+|+ +.+|.||+|++..-
T Consensus 204 g~~~l~~~l~~~l~~~v~~~~~V~~i~~~~~~-v~v~~~~g~-~~ad~Vv~a~~~~~ 258 (424)
T 2b9w_A 204 GTQAMFEHLNATLEHPAERNVDITRITREDGK-VHIHTTDWD-RESDVLVLTVPLEK 258 (424)
T ss_dssp CHHHHHHHHHHHSSSCCBCSCCEEEEECCTTC-EEEEESSCE-EEESEEEECSCHHH
T ss_pred hHHHHHHHHHHhhcceEEcCCEEEEEEEECCE-EEEEECCCe-EEcCEEEECCCHHH
Confidence 34444445555556788999999999887666 678888886 99999999998753
|
| >3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase; HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB: 3hdy_A* 3he3_A* 3mj4_A* | Back alignment and structure |
|---|
Probab=97.99 E-value=5.1e-06 Score=84.38 Aligned_cols=43 Identities=28% Similarity=0.414 Sum_probs=38.2
Q ss_pred CCCccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCeec
Q 008860 70 HYDFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCV 121 (551)
Q Consensus 70 ~~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~~ 121 (551)
..++||+|||||++|+++|..|++.|.+|+|+|+ ...+||.|.
T Consensus 27 ~~~~dv~IIGaG~aGl~aA~~l~~~g~~v~v~E~---------~~~~GG~~~ 69 (397)
T 3hdq_A 27 SKGFDYLIVGAGFAGSVLAERLASSGQRVLIVDR---------RPHIGGNAY 69 (397)
T ss_dssp CCCEEEEEECCSHHHHHHHHHHHHTTCCEEEECS---------SSSSSGGGC
T ss_pred CCCCCEEEECccHHHHHHHHHHHHCCCceEEEec---------cCCCCCccc
Confidence 3469999999999999999999999999999993 567888875
|
| >3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A* | Back alignment and structure |
|---|
Probab=97.98 E-value=9.2e-06 Score=87.13 Aligned_cols=101 Identities=20% Similarity=0.251 Sum_probs=73.8
Q ss_pred CeEEEEcCcHHHHHHHHHHHhC--CCeEEEEeecCccC----------CC-C-C-H-HHHHHHHHHHHhcCcEEEcCccc
Q 008860 246 EKIAIVGGGYIALEFAGIFSGL--TSEVHVFIRQKKVL----------RG-F-D-E-DIRDFVAEQMSLRGIEFHTEESP 309 (551)
Q Consensus 246 ~~vvViG~G~~g~e~a~~l~~~--g~~Vtlv~~~~~~l----------~~-~-~-~-~~~~~l~~~l~~~Gv~i~~~~~v 309 (551)
++|+|||+|+.|+.+|..|++. +.+|+++++.+.+. .. . + . .+........++.|++++++++|
T Consensus 2 ~~VvIIGgG~AGl~aA~~L~~~~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~V 81 (565)
T 3ntd_A 2 KKILIIGGVAGGASAAARARRLSETAEIIMFERGEYVSFANCGLPYHISGEIAQRSALVLQTPESFKARFNVEVRVKHEV 81 (565)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHCSSSEEEEECSSSCSSBCGGGHHHHHTSSSCCGGGGBCCCHHHHHHHHCCEEETTEEE
T ss_pred CcEEEECCCHHHHHHHHHHHhhCcCCCEEEEECCCCccccccCchHHhcCCcCChHHhhccCHHHHHHhcCcEEEECCEE
Confidence 5899999999999999999988 78999999987631 00 0 0 0 11122334445589999999999
Q ss_pred EEEEEcCCceEEEEE-CCCe--EEEeeEEEEecCcCCCCCC
Q 008860 310 QAILKSTDGSLSVKT-NKGT--VDGFSHVMFATGRRPNTKN 347 (551)
Q Consensus 310 ~~i~~~~~~~~~V~~-~~G~--~i~~d~vi~a~G~~p~~~~ 347 (551)
++++.+.+. +.+.. .+|+ ++.+|.+|+|||.+|....
T Consensus 82 ~~id~~~~~-v~~~~~~~g~~~~~~~d~lviAtG~~p~~p~ 121 (565)
T 3ntd_A 82 VAIDRAAKL-VTVRRLLDGSEYQESYDTLLLSPGAAPIVPP 121 (565)
T ss_dssp EEEETTTTE-EEEEETTTCCEEEEECSEEEECCCEEECCCC
T ss_pred EEEECCCCE-EEEEecCCCCeEEEECCEEEECCCCCCCCCC
Confidence 999876554 55544 2343 7899999999999887643
|
| >3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A* | Back alignment and structure |
|---|
Probab=97.97 E-value=1.1e-05 Score=84.08 Aligned_cols=100 Identities=16% Similarity=0.087 Sum_probs=75.4
Q ss_pred eEEEEcCcHHHHHHHHHHHhCC-----CeEEEEeecCccC-------CC--C----------------------------
Q 008860 247 KIAIVGGGYIALEFAGIFSGLT-----SEVHVFIRQKKVL-------RG--F---------------------------- 284 (551)
Q Consensus 247 ~vvViG~G~~g~e~a~~l~~~g-----~~Vtlv~~~~~~l-------~~--~---------------------------- 284 (551)
+|+|||+|+.|+.+|..|++.| .+|+++++.+.+. +. .
T Consensus 32 dVvIIGaG~aGl~aA~~L~~~g~~~~~~~v~liE~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~p~~~~~~~~~l~~~~ 111 (463)
T 3s5w_A 32 DLIGVGFGPSNIALAIALQERAQAQGALEVLFLDKQGDYRWHGNTLVSQSELQISFLKDLVSLRNPTSPYSFVNYLHKHD 111 (463)
T ss_dssp SEEEECCSHHHHHHHHHHHHHHHHHCCCCEEEEESCSSCCSSGGGCCSSCBCSSCTTSSSSTTTCTTCTTSHHHHHHHTT
T ss_pred CEEEECCCHHHHHHHHHHHhcccccCcccEEEEecCCCCCCcCCCCCCCCcCCcchhhccccccCCCCCCChhHhhhhcC
Confidence 6999999999999999999999 9999999877321 00 0
Q ss_pred --------------CHHHHHHHHHHHHhcCcEEEcCcccEEEEEcC--Cce--EEEEECCCe----EEEeeEEEEecCcC
Q 008860 285 --------------DEDIRDFVAEQMSLRGIEFHTEESPQAILKST--DGS--LSVKTNKGT----VDGFSHVMFATGRR 342 (551)
Q Consensus 285 --------------~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~--~~~--~~V~~~~G~----~i~~d~vi~a~G~~ 342 (551)
..++.+.+....++.+++++++++|++++.++ ++. +.|.+.+|+ ++.+|.||+|+|..
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~~~~V~~~~g~g~~~~~~~d~lVlAtG~~ 191 (463)
T 3s5w_A 112 RLVDFINLGTFYPCRMEFNDYLRWVASHFQEQSRYGEEVLRIEPMLSAGQVEALRVISRNADGEELVRTTRALVVSPGGT 191 (463)
T ss_dssp CHHHHHHHCCSCCBHHHHHHHHHHHHTTCTTTEEESEEEEEEEEEEETTEEEEEEEEEEETTSCEEEEEESEEEECCCCE
T ss_pred ceeecccccCCCCCHHHHHHHHHHHHHHcCCeEEeCCEEEEEEEecCCCceEEEEEEEecCCCceEEEEeCEEEECCCCC
Confidence 12334445555666789999999999998752 221 367776664 79999999999998
Q ss_pred CCCC
Q 008860 343 PNTK 346 (551)
Q Consensus 343 p~~~ 346 (551)
|...
T Consensus 192 p~~p 195 (463)
T 3s5w_A 192 PRIP 195 (463)
T ss_dssp ECCC
T ss_pred CCCc
Confidence 7643
|
| >3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris} | Back alignment and structure |
|---|
Probab=97.96 E-value=1.2e-05 Score=84.15 Aligned_cols=100 Identities=14% Similarity=0.204 Sum_probs=65.9
Q ss_pred CeEEEEcCcHHHHHHHHHHHhC--CCeEEEEeecCcc------CCC-C------CHHH-------HHHHHHHHHhcCcEE
Q 008860 246 EKIAIVGGGYIALEFAGIFSGL--TSEVHVFIRQKKV------LRG-F------DEDI-------RDFVAEQMSLRGIEF 303 (551)
Q Consensus 246 ~~vvViG~G~~g~e~a~~l~~~--g~~Vtlv~~~~~~------l~~-~------~~~~-------~~~l~~~l~~~Gv~i 303 (551)
++|+|||+|+.|+.+|..|++. |.+|+++++.+.+ ++. + ..++ ........++.|+++
T Consensus 4 ~~VvIIGaG~aGl~aA~~L~~~~~g~~Vtvie~~~~~~~~~~gl~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~ 83 (472)
T 3iwa_A 4 KHVVVIGAVALGPKAACRFKRLDPEAHVTMIDQASRISYGGCGIPYYVSGEVSNIESLQATPYNVVRDPEFFRINKDVEA 83 (472)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHCTTSEEEEECCC-------------------------------------------CEE
T ss_pred CcEEEECCCHHHHHHHHHHHhhCcCCCEEEEECCCcccccccccchhhcCCCCchHHhccccchhccCHHHHhhhcCcEE
Confidence 6899999999999999999998 8999999998763 111 1 1111 112222333579999
Q ss_pred EcCcccEEEEEcCCceEEEEE-CCCe--EEEeeEEEEecCcCCCCC
Q 008860 304 HTEESPQAILKSTDGSLSVKT-NKGT--VDGFSHVMFATGRRPNTK 346 (551)
Q Consensus 304 ~~~~~v~~i~~~~~~~~~V~~-~~G~--~i~~d~vi~a~G~~p~~~ 346 (551)
+.+++|++++.+.+. +.+.. .+|+ .+.+|.+|+|||.+|...
T Consensus 84 ~~~~~V~~id~~~~~-v~~~~~~~g~~~~~~~d~lviAtG~~p~~p 128 (472)
T 3iwa_A 84 LVETRAHAIDRAAHT-VEIENLRTGERRTLKYDKLVLALGSKANRP 128 (472)
T ss_dssp ECSEEEEEEETTTTE-EEEEETTTCCEEEEECSEEEECCCEEECCC
T ss_pred EECCEEEEEECCCCE-EEEeecCCCCEEEEECCEEEEeCCCCcCCC
Confidence 999999999876554 55544 3354 789999999999988754
|
| >1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A* | Back alignment and structure |
|---|
Probab=97.93 E-value=7.4e-06 Score=82.57 Aligned_cols=35 Identities=26% Similarity=0.291 Sum_probs=32.3
Q ss_pred CCCCccEEEECCChHHHHHHHHHHhCCCcEEEEcc
Q 008860 69 SHYDFDLFTIGAGSGGVRASRFAANFGASVAICEL 103 (551)
Q Consensus 69 ~~~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~ 103 (551)
|++++||+|||||++|+++|++|++.|++|+|||+
T Consensus 3 m~~~~dVvVIG~Gi~Gls~A~~La~~G~~V~vle~ 37 (363)
T 1c0p_A 3 MHSQKRVVVLGSGVIGLSSALILARKGYSVHILAR 37 (363)
T ss_dssp CCCSCEEEEECCSHHHHHHHHHHHHTTCEEEEEES
T ss_pred CCCCCCEEEECCCHHHHHHHHHHHhCCCEEEEEec
Confidence 44578999999999999999999999999999993
|
| >2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis} | Back alignment and structure |
|---|
Probab=97.92 E-value=1.2e-05 Score=83.60 Aligned_cols=99 Identities=14% Similarity=0.191 Sum_probs=73.9
Q ss_pred eEEEEcCcHHHHHHHHHHHhC--CCeEEEEeecCccC----------CC-C---C-HHHHHHHHHHHHhcCcEEEcCccc
Q 008860 247 KIAIVGGGYIALEFAGIFSGL--TSEVHVFIRQKKVL----------RG-F---D-EDIRDFVAEQMSLRGIEFHTEESP 309 (551)
Q Consensus 247 ~vvViG~G~~g~e~a~~l~~~--g~~Vtlv~~~~~~l----------~~-~---~-~~~~~~l~~~l~~~Gv~i~~~~~v 309 (551)
+++|||+|+.|+.+|..|++. |.+|+++++.+.+. .. . + .++...+.+.+++.|++++.++++
T Consensus 2 dvvIIGgG~aGl~aA~~l~~~~~g~~V~lie~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~v 81 (452)
T 2cdu_A 2 KVIVVGCTHAGTFAVKQTIADHPDADVTAYEMNDNISFLSCGIALYLGKEIKNNDPRGLFYSSPEELSNLGANVQMRHQV 81 (452)
T ss_dssp EEEEECCSHHHHHHHHHHHHHCTTCEEEEEESSSCCCBCGGGHHHHHTTCBGGGCGGGGBSCCHHHHHHTTCEEEESEEE
T ss_pred eEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCCCcccccchhhhcCCcccCCHHHhhhcCHHHHHHcCCEEEeCCEE
Confidence 689999999999999999998 99999999987421 11 1 1 112222346677889999999999
Q ss_pred EEEEEcCCceEEEEEC-C--CeEEEeeEEEEecCcCCCCC
Q 008860 310 QAILKSTDGSLSVKTN-K--GTVDGFSHVMFATGRRPNTK 346 (551)
Q Consensus 310 ~~i~~~~~~~~~V~~~-~--G~~i~~d~vi~a~G~~p~~~ 346 (551)
..++.+++. +.+... + ++++.+|.+|+|+|.+|...
T Consensus 82 ~~i~~~~~~-v~v~~~~~g~~~~~~~d~lviAtGs~p~~p 120 (452)
T 2cdu_A 82 TNVDPETKT-IKVKDLITNEEKTEAYDKLIMTTGSKPTVP 120 (452)
T ss_dssp EEEEGGGTE-EEEEETTTCCEEEEECSEEEECCCEEECCC
T ss_pred EEEEcCCCE-EEEEecCCCceEEEECCEEEEccCCCcCCC
Confidence 999765544 555431 2 45799999999999988754
|
| >1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A {Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A* 3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A* 3cnt_B* 1yy5_A* 1xpq_A* | Back alignment and structure |
|---|
Probab=97.91 E-value=5.6e-06 Score=87.77 Aligned_cols=40 Identities=28% Similarity=0.414 Sum_probs=36.4
Q ss_pred CccEEEECCChHHHHHHHHHHhCC-CcEEEEccCCCCCCCCCCCCCCCee
Q 008860 72 DFDLFTIGAGSGGVRASRFAANFG-ASVAICELPFSTISSETTGGVGGTC 120 (551)
Q Consensus 72 ~~dVvIIGgG~aGl~aA~~l~~~G-~~V~liE~~~~~~~~~~~~~~GG~~ 120 (551)
.+||+|||||++||+||..|++.| ++|+|+|+ ...+||.+
T Consensus 8 ~~~VvIIGaG~aGL~AA~~L~~~G~~~V~VlEa---------~~riGGr~ 48 (516)
T 1rsg_A 8 KKKVIIIGAGIAGLKAASTLHQNGIQDCLVLEA---------RDRVGGRL 48 (516)
T ss_dssp EEEEEEECCBHHHHHHHHHHHHTTCCSEEEECS---------SSSSBTTC
T ss_pred CCcEEEECCCHHHHHHHHHHHhcCCCCEEEEeC---------CCCCCCce
Confidence 579999999999999999999999 99999994 66788876
|
| >1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A* | Back alignment and structure |
|---|
Probab=97.91 E-value=1.6e-05 Score=82.52 Aligned_cols=99 Identities=20% Similarity=0.368 Sum_probs=74.0
Q ss_pred eEEEEcCcHHHHHHHHHHHhC--CCeEEEEeecCccC----------CC-C-C-HHHHHHHHHHHHhcCcEEEcCcccEE
Q 008860 247 KIAIVGGGYIALEFAGIFSGL--TSEVHVFIRQKKVL----------RG-F-D-EDIRDFVAEQMSLRGIEFHTEESPQA 311 (551)
Q Consensus 247 ~vvViG~G~~g~e~a~~l~~~--g~~Vtlv~~~~~~l----------~~-~-~-~~~~~~l~~~l~~~Gv~i~~~~~v~~ 311 (551)
+++|||+|+.|+.+|..|++. |.+|+++++.+.+. .. . + .++.....+.+++.|++++.++.+..
T Consensus 2 dvvIIG~G~aGl~aA~~l~~~~~g~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~ 81 (447)
T 1nhp_A 2 KVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFISFLSAGMQLYLEGKVKDVNSVRYMTGEKMESRGVNVFSNTEITA 81 (447)
T ss_dssp EEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSSSSSBCGGGHHHHHTTSSCCGGGSBSCCHHHHHHTTCEEEETEEEEE
T ss_pred eEEEECCCHHHHHHHHHHHHhCcCCeEEEEECCCccCcccccchhhhcCccCCHHHhhcCCHHHHHHCCCEEEECCEEEE
Confidence 699999999999999999988 89999999876431 01 0 1 11222245667788999999999999
Q ss_pred EEEcCCceEEEEE-CCCe--EEEeeEEEEecCcCCCCC
Q 008860 312 ILKSTDGSLSVKT-NKGT--VDGFSHVMFATGRRPNTK 346 (551)
Q Consensus 312 i~~~~~~~~~V~~-~~G~--~i~~d~vi~a~G~~p~~~ 346 (551)
++.+++. +.+.. .+|+ ++.+|.+|+|||.+|...
T Consensus 82 i~~~~~~-v~~~~~~~g~~~~~~~d~lviAtG~~p~~p 118 (447)
T 1nhp_A 82 IQPKEHQ-VTVKDLVSGEERVENYDKLIISPGAVPFEL 118 (447)
T ss_dssp EETTTTE-EEEEETTTCCEEEEECSEEEECCCEEECCC
T ss_pred EeCCCCE-EEEEecCCCceEEEeCCEEEEcCCCCcCCC
Confidence 9765544 55544 3464 489999999999988754
|
| >4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A* | Back alignment and structure |
|---|
Probab=97.89 E-value=1.6e-05 Score=83.79 Aligned_cols=100 Identities=17% Similarity=0.263 Sum_probs=71.8
Q ss_pred CeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccC-----C-----CCCH-HHHHHHHHHH--HhcCcEEEcCcccEEE
Q 008860 246 EKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVL-----R-----GFDE-DIRDFVAEQM--SLRGIEFHTEESPQAI 312 (551)
Q Consensus 246 ~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l-----~-----~~~~-~~~~~l~~~l--~~~Gv~i~~~~~v~~i 312 (551)
++|||||+|+.|+.+|..|.+.+.+|+++++.+.+. + .+++ ++...+.+.+ ++.+++++.. ++++|
T Consensus 43 prVVIIGgG~AGl~~A~~L~~~~~~VtLId~~~~~~~~PlL~~va~G~l~~~~i~~p~~~~~~~~~~~v~~~~~-~v~~I 121 (502)
T 4g6h_A 43 PNVLILGSGWGAISFLKHIDTKKYNVSIISPRSYFLFTPLLPSAPVGTVDEKSIIEPIVNFALKKKGNVTYYEA-EATSI 121 (502)
T ss_dssp CEEEEECSSHHHHHHHHHSCTTTCEEEEEESSSEEECGGGGGGTTTTSSCGGGGEEEHHHHHTTCSSCEEEEEE-EEEEE
T ss_pred CCEEEECCcHHHHHHHHHhhhCCCcEEEECCCCCcccccchhHHhhccccHHHhhhhHHHHHHhhcCCeEEEEE-EEEEE
Confidence 589999999999999999999999999999987532 1 1221 1222233333 2447888866 78888
Q ss_pred EEcCCceEEEEE------------------CCCeEEEeeEEEEecCcCCCCCC
Q 008860 313 LKSTDGSLSVKT------------------NKGTVDGFSHVMFATGRRPNTKN 347 (551)
Q Consensus 313 ~~~~~~~~~V~~------------------~~G~~i~~d~vi~a~G~~p~~~~ 347 (551)
+.+.+. +.+.. .++.++++|.+|+|+|..|+...
T Consensus 122 D~~~k~-V~l~~~~~~~~~~~~~~~~~~~~~~~~~i~YD~LViAtGs~~~~~~ 173 (502)
T 4g6h_A 122 NPDRNT-VTIKSLSAVSQLYQPENHLGLHQAEPAEIKYDYLISAVGAEPNTFG 173 (502)
T ss_dssp EGGGTE-EEEEEEEEEEECSSSCCCCCCCTTCCEEEECSEEEECCCCEECCTT
T ss_pred EhhhCE-EEEeecccceeecccccccccccCCceEEeCCEEEEcCCcccccCC
Confidence 876554 44432 34668999999999999998754
|
| >3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=97.89 E-value=1.2e-05 Score=83.20 Aligned_cols=54 Identities=13% Similarity=0.101 Sum_probs=39.3
Q ss_pred CccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHH
Q 008860 72 DFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLL 131 (551)
Q Consensus 72 ~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l 131 (551)
++||+|||||++|+++|+.|++.|++|+|||+. ......+|.+...+|.....+
T Consensus 22 ~~~ViIVGaGpaGl~~A~~La~~G~~V~viE~~------~~~~~~~g~~~~~~~~~~~~~ 75 (430)
T 3ihm_A 22 KKRIGIVGAGTAGLHLGLFLRQHDVDVTVYTDR------KPDEYSGLRLLNTVAHNAVTV 75 (430)
T ss_dssp -CEEEEECCHHHHHHHHHHHHHTTCEEEEEESC------CGGGSTTSCCCCCCCBCHHHH
T ss_pred CCCEEEECCcHHHHHHHHHHHHCCCeEEEEcCC------ChHhhcccccccchhccchhh
Confidence 479999999999999999999999999999931 111223445555566655444
|
| >1pn0_A Phenol 2-monooxygenase; two dimers, TLS refinement, oxidoreductase; HET: FAD; 1.70A {Trichosporon cutaneum} SCOP: c.3.1.2 c.47.1.10 d.16.1.2 PDB: 1foh_A* | Back alignment and structure |
|---|
Probab=97.89 E-value=0.00025 Score=77.28 Aligned_cols=32 Identities=28% Similarity=0.430 Sum_probs=30.6
Q ss_pred CccEEEECCChHHHHHHHHHHh-----CCCcEEEEcc
Q 008860 72 DFDLFTIGAGSGGVRASRFAAN-----FGASVAICEL 103 (551)
Q Consensus 72 ~~dVvIIGgG~aGl~aA~~l~~-----~G~~V~liE~ 103 (551)
++||+||||||+||++|..|++ .|++|+|||+
T Consensus 8 ~~dVlIVGaGpaGL~lA~~La~~~~~~~Gi~v~viE~ 44 (665)
T 1pn0_A 8 YCDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDK 44 (665)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECS
T ss_pred CCcEEEECcCHHHHHHHHHHhccccccCCCCEEEEeC
Confidence 5899999999999999999999 9999999994
|
| >2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A* | Back alignment and structure |
|---|
Probab=97.88 E-value=9.9e-06 Score=85.20 Aligned_cols=53 Identities=8% Similarity=0.058 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEECCC---eEEEeeEEEEecCcC
Q 008860 287 DIRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTNKG---TVDGFSHVMFATGRR 342 (551)
Q Consensus 287 ~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~G---~~i~~d~vi~a~G~~ 342 (551)
.+.+.+.+.+.+ .+++++++|++|+.++++ +.|++.+| +++.+|.||+|++..
T Consensus 240 ~l~~~l~~~l~~--~~i~~~~~V~~i~~~~~~-v~v~~~~g~~~~~~~ad~vI~a~p~~ 295 (489)
T 2jae_A 240 RIYYAFQDRIGT--DNIVFGAEVTSMKNVSEG-VTVEYTAGGSKKSITADYAICTIPPH 295 (489)
T ss_dssp HHHHHHHHHHCG--GGEETTCEEEEEEEETTE-EEEEEEETTEEEEEEESEEEECSCHH
T ss_pred HHHHHHHHhcCC--CeEEECCEEEEEEEcCCe-EEEEEecCCeEEEEECCEEEECCCHH
Confidence 455555555532 689999999999987776 77887776 679999999998654
|
| >2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A* | Back alignment and structure |
|---|
Probab=97.88 E-value=6.8e-06 Score=85.51 Aligned_cols=41 Identities=34% Similarity=0.459 Sum_probs=36.7
Q ss_pred CccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCeec
Q 008860 72 DFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCV 121 (551)
Q Consensus 72 ~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~~ 121 (551)
++||+|||||++||+||+.|++.|++|+|+|+ ...+||.+.
T Consensus 5 ~~~v~iiG~G~~Gl~aA~~l~~~g~~v~v~E~---------~~~~GG~~~ 45 (453)
T 2yg5_A 5 QRDVAIVGAGPSGLAAATALRKAGLSVAVIEA---------RDRVGGRTW 45 (453)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEECS---------SSSSCTTCC
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCcEEEEEC---------CCCCCCcee
Confidence 58999999999999999999999999999993 566788764
|
| >2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A* | Back alignment and structure |
|---|
Probab=97.88 E-value=8.4e-06 Score=85.44 Aligned_cols=52 Identities=13% Similarity=0.197 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEE---CCCeEEEeeEEEEecCcC
Q 008860 287 DIRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKT---NKGTVDGFSHVMFATGRR 342 (551)
Q Consensus 287 ~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~---~~G~~i~~d~vi~a~G~~ 342 (551)
.+.+.+.+.+ |++++++++|++|..++++ +.|++ .+|+++.+|.||+|++..
T Consensus 239 ~l~~~l~~~l---g~~i~~~~~V~~i~~~~~~-~~v~~~~~~~g~~~~ad~vV~a~~~~ 293 (478)
T 2ivd_A 239 VLIDALAASL---GDAAHVGARVEGLAREDGG-WRLIIEEHGRRAELSVAQVVLAAPAH 293 (478)
T ss_dssp HHHHHHHHHH---GGGEESSEEEEEEECC--C-CEEEEEETTEEEEEECSEEEECSCHH
T ss_pred HHHHHHHHHh---hhhEEcCCEEEEEEecCCe-EEEEEeecCCCceEEcCEEEECCCHH
Confidence 4444444444 6799999999999877666 77887 778889999999999764
|
| >1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase, isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP: c.4.1.3 d.16.1.7 | Back alignment and structure |
|---|
Probab=97.87 E-value=8.3e-06 Score=82.41 Aligned_cols=42 Identities=19% Similarity=0.324 Sum_probs=37.1
Q ss_pred CccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCeecc
Q 008860 72 DFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVL 122 (551)
Q Consensus 72 ~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~~~ 122 (551)
++||+|||||++|+++|.+|++.|++|+|+|+ ...+||.|..
T Consensus 1 ~~~v~iiG~G~~Gl~~A~~l~~~g~~v~v~E~---------~~~~GG~~~~ 42 (367)
T 1i8t_A 1 MYDYIIVGSGLFGAVCANELKKLNKKVLVIEK---------RNHIGGNAYT 42 (367)
T ss_dssp CEEEEEECCSHHHHHHHHHHGGGTCCEEEECS---------SSSSSGGGCE
T ss_pred CCCEEEECcCHHHHHHHHHHHhCCCcEEEEec---------CCCCCcceEe
Confidence 37999999999999999999999999999993 5678888753
|
| >1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5 | Back alignment and structure |
|---|
Probab=97.87 E-value=9.2e-06 Score=85.77 Aligned_cols=43 Identities=28% Similarity=0.360 Sum_probs=36.0
Q ss_pred CCCCccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCee
Q 008860 69 SHYDFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTC 120 (551)
Q Consensus 69 ~~~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~ 120 (551)
|...+||+|||||++||++|+.|++.|++|+|+|+ ...+||.+
T Consensus 10 ~~~~~~v~iiG~G~~Gl~aA~~l~~~g~~v~v~E~---------~~~~GG~~ 52 (504)
T 1sez_A 10 HSSAKRVAVIGAGVSGLAAAYKLKIHGLNVTVFEA---------EGKAGGKL 52 (504)
T ss_dssp ---CCEEEEECCSHHHHHHHHHHHTTSCEEEEECS---------SSSSCSSC
T ss_pred cCCCCeEEEECCCHHHHHHHHHHHHCCCcEEEEEe---------CCCCCCce
Confidence 44568999999999999999999999999999994 56677765
|
| >2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense} | Back alignment and structure |
|---|
Probab=97.87 E-value=1.1e-05 Score=83.77 Aligned_cols=89 Identities=18% Similarity=0.253 Sum_probs=70.8
Q ss_pred CCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCcc-------CCC--CCHHHHHHHHHHHHhcCcEEEcCcccEEEEE
Q 008860 244 KPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKV-------LRG--FDEDIRDFVAEQMSLRGIEFHTEESPQAILK 314 (551)
Q Consensus 244 ~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~-------l~~--~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~ 314 (551)
..++|+|||+|+.|+.+|..|++.|.+|+++++.+.+ ++. ++.++.+...+.+++.||++++++.+.
T Consensus 121 ~~~~V~IIGgGpAGl~aA~~L~~~G~~V~v~e~~~~~GG~l~~gip~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~---- 196 (456)
T 2vdc_G 121 LGLSVGVIGAGPAGLAAAEELRAKGYEVHVYDRYDRMGGLLVYGIPGFKLEKSVVERRVKLLADAGVIYHPNFEVG---- 196 (456)
T ss_dssp CCCCEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSCSTHHHHTSCTTTSCHHHHHHHHHHHHHTTCEEETTCCBT----
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCCeeeecCCCccCCHHHHHHHHHHHHHCCcEEEeCCEec----
Confidence 3578999999999999999999999999999998764 233 466777788888999999999997763
Q ss_pred cCCceEEEEECCCeEEEeeEEEEecCcC
Q 008860 315 STDGSLSVKTNKGTVDGFSHVMFATGRR 342 (551)
Q Consensus 315 ~~~~~~~V~~~~G~~i~~d~vi~a~G~~ 342 (551)
.. +.+.++. +++|.||+|+|..
T Consensus 197 --~~---v~~~~~~-~~~d~vvlAtG~~ 218 (456)
T 2vdc_G 197 --RD---ASLPELR-RKHVAVLVATGVY 218 (456)
T ss_dssp --TT---BCHHHHH-SSCSEEEECCCCC
T ss_pred --cE---EEhhHhH-hhCCEEEEecCCC
Confidence 11 2233332 5799999999996
|
| >1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution, hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3 d.16.1.6 PDB: 1lv0_A* 1gnd_A | Back alignment and structure |
|---|
Probab=97.85 E-value=1.3e-05 Score=82.87 Aligned_cols=59 Identities=14% Similarity=0.211 Sum_probs=49.0
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCcCCC
Q 008860 285 DEDIRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPN 344 (551)
Q Consensus 285 ~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~ 344 (551)
...+.+.+.+.+++.|++++++++|++|..++++...|. .+|+++.||.||+|+|..+.
T Consensus 233 ~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~v~~v~-~~g~~~~ad~VV~a~~~~~~ 291 (433)
T 1d5t_A 233 LGELPQGFARLSAIYGGTYMLNKPVDDIIMENGKVVGVK-SEGEVARCKQLICDPSYVPD 291 (433)
T ss_dssp TTHHHHHHHHHHHHHTCCCBCSCCCCEEEEETTEEEEEE-ETTEEEECSEEEECGGGCGG
T ss_pred HHHHHHHHHHHHHHcCCEEECCCEEEEEEEeCCEEEEEE-ECCeEEECCEEEECCCCCcc
Confidence 347888899999999999999999999988766533344 47888999999999998874
|
| >3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A* | Back alignment and structure |
|---|
Probab=97.85 E-value=2.7e-05 Score=81.72 Aligned_cols=100 Identities=14% Similarity=0.146 Sum_probs=73.3
Q ss_pred CeEEEEcCcHHHHHHHHHHHhC--CCeEEEEeecCccC------C----C--C-CHHHHHHHHHHH-HhcCcEEEcCccc
Q 008860 246 EKIAIVGGGYIALEFAGIFSGL--TSEVHVFIRQKKVL------R----G--F-DEDIRDFVAEQM-SLRGIEFHTEESP 309 (551)
Q Consensus 246 ~~vvViG~G~~g~e~a~~l~~~--g~~Vtlv~~~~~~l------~----~--~-~~~~~~~l~~~l-~~~Gv~i~~~~~v 309 (551)
.+|+|||+|+.|+.+|..|++. |.+|+++++.+... + . . ..++.....+.+ +..|++++.+++|
T Consensus 37 ~dvvIIG~G~aGl~aA~~l~~~~~g~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gv~~~~~~~v 116 (480)
T 3cgb_A 37 MNYVIIGGDAAGMSAAMQIVRNDENANVVTLEKGEIYSYAQCGLPYVISGAIASTEKLIARNVKTFRDKYGIDAKVRHEV 116 (480)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSSSCCSBCGGGHHHHHTTSSSCGGGGBSSCHHHHHHTTCCEEESSEEE
T ss_pred ceEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCCCCCCCCcchhhcCCcCCHHHhhhcCHHHHHhhcCCEEEeCCEE
Confidence 4899999999999999999986 89999999876531 0 0 0 111111223445 4459999999999
Q ss_pred EEEEEcCCceEEEEE-CCCe--EEEeeEEEEecCcCCCCC
Q 008860 310 QAILKSTDGSLSVKT-NKGT--VDGFSHVMFATGRRPNTK 346 (551)
Q Consensus 310 ~~i~~~~~~~~~V~~-~~G~--~i~~d~vi~a~G~~p~~~ 346 (551)
..++.+++. +.+.. .+|+ ++.+|.+|+|+|.+|...
T Consensus 117 ~~i~~~~~~-v~v~~~~~g~~~~~~~d~lviAtG~~p~~p 155 (480)
T 3cgb_A 117 TKVDTEKKI-VYAEHTKTKDVFEFSYDRLLIATGVRPVMP 155 (480)
T ss_dssp EEEETTTTE-EEEEETTTCCEEEEECSEEEECCCEEECCC
T ss_pred EEEECCCCE-EEEEEcCCCceEEEEcCEEEECCCCcccCC
Confidence 999765544 55554 4566 799999999999988754
|
| >3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=97.82 E-value=5.6e-05 Score=78.92 Aligned_cols=97 Identities=13% Similarity=0.110 Sum_probs=72.3
Q ss_pred eEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCC-------------------------------CCCH-HH------
Q 008860 247 KIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLR-------------------------------GFDE-DI------ 288 (551)
Q Consensus 247 ~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~-------------------------------~~~~-~~------ 288 (551)
+|+|||+|+.|+.+|..|++.|.+|+++++.+.+-. .++- .+
T Consensus 6 DVvVIGgG~aGl~aA~~l~~~G~~V~liEk~~~~GG~~~~~gciPsk~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (466)
T 3l8k_A 6 DVVVIGAGGAGYHGAFRLAKAKYNVLMADPKGELGGNCLYSGCVPSKTVREVIQTAWRLTNIANVKIPLDFSTVQDRKDY 85 (466)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEECTTSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHHHCSCCCCCHHHHHHHHHH
T ss_pred eEEEECCCHHHHHHHHHHHhCCCeEEEEECCCCCCCcccccCCCchHHHHHHHHHHHHHHhcccCCCCcCHHHHHHHHHh
Confidence 699999999999999999999999999996654310 0110 00
Q ss_pred ----H--HHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEECCCeE--EEeeEEEEecCcCCCCCC
Q 008860 289 ----R--DFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTNKGTV--DGFSHVMFATGRRPNTKN 347 (551)
Q Consensus 289 ----~--~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~G~~--i~~d~vi~a~G~~p~~~~ 347 (551)
. ..+.+.+++.|++++.+ ++..++ .+ .+.|.+.+|++ +.+|.+|+|+|..|....
T Consensus 86 ~~~l~~~~~~~~~~~~~~v~~~~g-~v~~id--~~-~~~V~~~~g~~~~~~~d~lviAtG~~p~~p~ 148 (466)
T 3l8k_A 86 VQELRFKQHKRNMSQYETLTFYKG-YVKIKD--PT-HVIVKTDEGKEIEAETRYMIIASGAETAKLR 148 (466)
T ss_dssp HHHHHHHHHHHHHTTCTTEEEESE-EEEEEE--TT-EEEEEETTSCEEEEEEEEEEECCCEEECCCC
T ss_pred heeccccchHHHHHHhCCCEEEEe-EEEEec--CC-eEEEEcCCCcEEEEecCEEEECCCCCccCCC
Confidence 1 33444556779999988 566664 22 37788888888 999999999999887643
|
| >1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A* | Back alignment and structure |
|---|
Probab=97.81 E-value=2e-05 Score=82.89 Aligned_cols=97 Identities=16% Similarity=0.274 Sum_probs=70.4
Q ss_pred CeEEEEcCcHHHHHHHHHHHhC--CCeEEEEeecCccC------CC-C--CH--HHHHH--------------------H
Q 008860 246 EKIAIVGGGYIALEFAGIFSGL--TSEVHVFIRQKKVL------RG-F--DE--DIRDF--------------------V 292 (551)
Q Consensus 246 ~~vvViG~G~~g~e~a~~l~~~--g~~Vtlv~~~~~~l------~~-~--~~--~~~~~--------------------l 292 (551)
.+++|||+|+.|+.+|..|++. +.+|+++++.+.+. .. + .. ...+. +
T Consensus 12 ~~vvIIGgG~AGl~aA~~L~~~~~g~~V~lie~~~~~~y~r~~lsk~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (493)
T 1m6i_A 12 VPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPELPYMRPPLSKELWFSDDPNVTKTLRFKQWNGKERSIYFQPPSFY 91 (493)
T ss_dssp EEEEEESCSHHHHHHHHHHHHHSTTCEEEEEESSSSCCBCSGGGGTGGGCC--CTHHHHCEEECTTSCEEESBSSCGGGS
T ss_pred CCEEEECChHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCCCCCCCHHhhcCCccchhhcccccccccccccccccchHhh
Confidence 4799999999999999998876 88999999876431 00 0 00 00000 0
Q ss_pred H--HH---HHhcCcEEEcCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCcCCCC
Q 008860 293 A--EQ---MSLRGIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNT 345 (551)
Q Consensus 293 ~--~~---l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~~ 345 (551)
. +. +.+.||+++.+++|..++.+.. .|.+.+|+++.+|.+|+|||.+|..
T Consensus 92 ~~~~~l~~~~~~gv~~~~g~~v~~id~~~~---~V~~~~g~~i~yd~lviATGs~p~~ 146 (493)
T 1m6i_A 92 VSAQDLPHIENGGVAVLTGKKVVQLDVRDN---MVKLNDGSQITYEKCLIATGGTPRS 146 (493)
T ss_dssp BCTTTTTTSTTCEEEEEETCCEEEEEGGGT---EEEETTSCEEEEEEEEECCCEEECC
T ss_pred cchhhhhhhhcCCeEEEcCCEEEEEECCCC---EEEECCCCEEECCEEEECCCCCCCC
Confidence 0 00 1246899999999999976543 4778899899999999999998864
|
| >3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer, GMC oxidoredu PHBH fold, rossmann domain, oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A* 2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A* 3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A* 3fdy_A* ... | Back alignment and structure |
|---|
Probab=97.80 E-value=1.3e-05 Score=86.53 Aligned_cols=60 Identities=12% Similarity=0.060 Sum_probs=43.8
Q ss_pred HhcCcEEEcCcccEEEEEcCC--ceEEEEEC---CCe--EEEeeEEEEecCcCCCCCCCCccccCee
Q 008860 297 SLRGIEFHTEESPQAILKSTD--GSLSVKTN---KGT--VDGFSHVMFATGRRPNTKNLGLEKVGVK 356 (551)
Q Consensus 297 ~~~Gv~i~~~~~v~~i~~~~~--~~~~V~~~---~G~--~i~~d~vi~a~G~~p~~~~l~l~~~gl~ 356 (551)
++.|+++++++.|++|..+++ ....|++. +|+ ++.+|.||+|+|..|++.+|.+...|..
T Consensus 271 ~~~nv~v~~~~~V~~i~~~~~~~~v~GV~~~~~~~g~~~~i~A~~VIlaaG~~~s~~lL~~sgiG~~ 337 (623)
T 3pl8_A 271 PEERFNLFPAVACERVVRNALNSEIESLHIHDLISGDRFEIKADVYVLTAGAVHNTQLLVNSGFGQL 337 (623)
T ss_dssp EEEEEEEECSEEEEEEEECTTSSCEEEEEEEETTTCCEEEECEEEEEECSCTTHHHHHHHTTTSSCC
T ss_pred cCCCEEEEeCCEEEEEEEECCCCEEEEEEEEEcCCCcEEEEECCEEEEcCCCcCCHHHHHhcCCCcc
Confidence 345899999999999987643 34456553 454 6889999999999999887544444443
|
| >4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A* | Back alignment and structure |
|---|
Probab=97.80 E-value=2.5e-05 Score=80.85 Aligned_cols=100 Identities=17% Similarity=0.195 Sum_probs=71.5
Q ss_pred eEEEEcCcHHHHHHHHHHHhCC--CeEEEEeecCccCC----------C--CCHH--HHHHHHHHHHhcCcEEEcCcccE
Q 008860 247 KIAIVGGGYIALEFAGIFSGLT--SEVHVFIRQKKVLR----------G--FDED--IRDFVAEQMSLRGIEFHTEESPQ 310 (551)
Q Consensus 247 ~vvViG~G~~g~e~a~~l~~~g--~~Vtlv~~~~~~l~----------~--~~~~--~~~~l~~~l~~~Gv~i~~~~~v~ 310 (551)
||+|||+|+.|+.+|..|+++| .+|+++++.+...- . .+.. +.....+.+++.|++++.+++|+
T Consensus 2 KVvIIG~G~AGl~aA~~l~~~g~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~V~ 81 (437)
T 4eqs_A 2 KIVVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMSFANCALPYVIGEVVEDRRYALAYTPEKFYDRKQITVKTYHEVI 81 (437)
T ss_dssp CEEEECCSTTHHHHHHHHHHHCSSSCEEEEESSSCSSBCGGGHHHHHTTSSCCGGGTBCCCHHHHHHHHCCEEEETEEEE
T ss_pred eEEEECCCHHHHHHHHHHHhCCCCCcEEEEeCCCCCCCCcchhHHHHcCCccchhhhhhcCHHHHHHhcCCEEEeCCeEE
Confidence 5999999999999999999987 47999998764310 0 0110 11112455678899999999999
Q ss_pred EEEEcCCceEEEEEC---CCeEEEeeEEEEecCcCCCCCC
Q 008860 311 AILKSTDGSLSVKTN---KGTVDGFSHVMFATGRRPNTKN 347 (551)
Q Consensus 311 ~i~~~~~~~~~V~~~---~G~~i~~d~vi~a~G~~p~~~~ 347 (551)
.|+.+... +.+... ++.++.+|.+|+|||.+|+...
T Consensus 82 ~id~~~~~-~~~~~~~~~~~~~~~yd~lVIATGs~p~~p~ 120 (437)
T 4eqs_A 82 AINDERQT-VSVLNRKTNEQFEESYDKLILSPGASANSLG 120 (437)
T ss_dssp EEETTTTE-EEEEETTTTEEEEEECSEEEECCCEEECCCC
T ss_pred EEEccCcE-EEEEeccCCceEEEEcCEEEECCCCcccccc
Confidence 99866544 444432 2346889999999999987643
|
| >2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi} | Back alignment and structure |
|---|
Probab=97.79 E-value=9e-05 Score=77.38 Aligned_cols=97 Identities=13% Similarity=0.143 Sum_probs=71.1
Q ss_pred CeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCC--------------------------------------CCC-H
Q 008860 246 EKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLR--------------------------------------GFD-E 286 (551)
Q Consensus 246 ~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~--------------------------------------~~~-~ 286 (551)
.+|+|||+|+.|+.+|..|++.|.+|+++++.+.+.. ..+ +
T Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~g~~psk~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 82 (468)
T 2qae_A 3 YDVVVIGGGPGGYVASIKAAQLGMKTACVEKRGALGGTCLNVGCIPSKALLHATHLYHDAHANFARYGLMGGEGVTMDSA 82 (468)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHTHHHHTEECGGGCEECHH
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCcCCcCCCcCcHhHHHHHHHHHHHHHHHHHHHhcCcccCCCCccCHH
Confidence 4799999999999999999999999999999854210 000 0
Q ss_pred H-----------HHHHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEECCC--eEEEeeEEEEecCcCCCCC
Q 008860 287 D-----------IRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTNKG--TVDGFSHVMFATGRRPNTK 346 (551)
Q Consensus 287 ~-----------~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~G--~~i~~d~vi~a~G~~p~~~ 346 (551)
. +...+.+.+++.|++++.++.+ .+ +.+. +.|.+.+| +++.+|.+|+|||.+|...
T Consensus 83 ~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~g~~~-~i--~~~~-~~v~~~~G~~~~~~~d~lviAtG~~p~~p 151 (468)
T 2qae_A 83 KMQQQKERAVKGLTGGVEYLFKKNKVTYYKGEGS-FE--TAHS-IRVNGLDGKQEMLETKKTIIATGSEPTEL 151 (468)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEE-EE--ETTE-EEEEETTSCEEEEEEEEEEECCCEEECCB
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEE-Ee--eCCE-EEEEecCCceEEEEcCEEEECCCCCcCCC
Confidence 0 1112345667789999988643 34 2333 77888888 6899999999999988754
|
| >2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase, lipopolysaccharide biosynthesi; HET: FAD; 2.0A {Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB: 2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A* | Back alignment and structure |
|---|
Probab=97.74 E-value=2.1e-05 Score=80.00 Aligned_cols=41 Identities=27% Similarity=0.410 Sum_probs=36.7
Q ss_pred CccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCeec
Q 008860 72 DFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCV 121 (551)
Q Consensus 72 ~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~~ 121 (551)
++||+|||||++|+++|..|++.|++|+|+|+ ...+||.|.
T Consensus 3 ~~~v~iiG~G~~Gl~~A~~l~~~g~~v~v~E~---------~~~~GG~~~ 43 (384)
T 2bi7_A 3 SKKILIVGAGFSGAVIGRQLAEKGHQVHIIDQ---------RDHIGGNSY 43 (384)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTTCEEEEEES---------SSSSSGGGC
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCcEEEEEe---------cCCcCCccc
Confidence 47999999999999999999999999999993 567888764
|
| >3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum} | Back alignment and structure |
|---|
Probab=97.73 E-value=1.8e-05 Score=82.94 Aligned_cols=40 Identities=20% Similarity=0.204 Sum_probs=35.3
Q ss_pred cEEEcCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCcC
Q 008860 301 IEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRR 342 (551)
Q Consensus 301 v~i~~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~ 342 (551)
++|+++++|++|+.++++ +.|++.+| ++.+|.||+|++..
T Consensus 249 ~~i~~~~~V~~i~~~~~~-~~v~~~~g-~~~ad~vV~a~p~~ 288 (475)
T 3lov_A 249 SEIRLETPLLAISREDGR-YRLKTDHG-PEYADYVLLTIPHP 288 (475)
T ss_dssp CEEESSCCCCEEEEETTE-EEEECTTC-CEEESEEEECSCHH
T ss_pred CEEEcCCeeeEEEEeCCE-EEEEECCC-eEECCEEEECCCHH
Confidence 799999999999987766 77888888 69999999999863
|
| >1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A* | Back alignment and structure |
|---|
Probab=97.73 E-value=0.00012 Score=76.36 Aligned_cols=98 Identities=21% Similarity=0.208 Sum_probs=70.0
Q ss_pred CCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCc--------------------------cCCC----------CC-HH
Q 008860 245 PEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKK--------------------------VLRG----------FD-ED 287 (551)
Q Consensus 245 ~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~--------------------------~l~~----------~~-~~ 287 (551)
..+|+|||+|+.|+.+|..|++.|.+|+++++... ..+. .+ ..
T Consensus 4 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lie~~~~GG~~~~~g~ip~k~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 83 (467)
T 1zk7_A 4 PVQVAVIGSGGAAMAAALKAVEQGAQVTLIERGTIGGTCVNVGCVPSKIMIRAAHIAHLRRESPFDGGIAATVPTIDRSK 83 (467)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSTTHHHHHHSHHHHHHHHHHHHHHHHHHCCTTTTTSCCCCCCCCHHH
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCCccccCCCccchHHHHHHHHHHHHHhhhhhcCCccCCCCccCHHH
Confidence 35899999999999999999999999999998730 0010 11 11
Q ss_pred HHH-------H-----HHHHHHhc-CcEEEcCcccEEEEEcCCceEEEEECCC--eEEEeeEEEEecCcCCCCC
Q 008860 288 IRD-------F-----VAEQMSLR-GIEFHTEESPQAILKSTDGSLSVKTNKG--TVDGFSHVMFATGRRPNTK 346 (551)
Q Consensus 288 ~~~-------~-----l~~~l~~~-Gv~i~~~~~v~~i~~~~~~~~~V~~~~G--~~i~~d~vi~a~G~~p~~~ 346 (551)
+.. . +.+.+++. |++++.+ ++..++ .+ .+.|.+.+| +++.+|.+|+|||.+|...
T Consensus 84 ~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~g-~~~~~~--~~-~~~v~~~~g~~~~~~~d~lviAtGs~p~~p 153 (467)
T 1zk7_A 84 LLAQQQARVDELRHAKYEGILGGNPAITVVHG-EARFKD--DQ-SLTVRLNEGGERVVMFDRCLVATGASPAVP 153 (467)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHTTCTTEEEEEE-EEEEEE--TT-EEEEEETTSSEEEEECSEEEECCCEEECCC
T ss_pred HHHHHHHHHHHHhhhhHHHHHhccCCeEEEEE-EEEEcc--CC-EEEEEeCCCceEEEEeCEEEEeCCCCCCCC
Confidence 111 1 22445566 9999887 355553 23 377888888 6799999999999988754
|
| >1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A* | Back alignment and structure |
|---|
Probab=97.73 E-value=8.1e-05 Score=77.89 Aligned_cols=97 Identities=10% Similarity=0.119 Sum_probs=70.3
Q ss_pred CeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCC--------------------------------------CCC-H
Q 008860 246 EKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLR--------------------------------------GFD-E 286 (551)
Q Consensus 246 ~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~--------------------------------------~~~-~ 286 (551)
.+++|||+|+.|+.+|..|++.|.+|+++++.+.+.. ..+ +
T Consensus 7 ~dvvIIGgG~aGl~aA~~l~~~g~~V~liE~~~~~GG~~~~~g~~Psk~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 86 (474)
T 1zmd_A 7 ADVTVIGSGPGGYVAAIKAAQLGFKTVCIEKNETLGGTCLNVGCIPSKALLNNSHYYHMAHGTDFASRGIEMSEVRLNLD 86 (474)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHSSHHHHTTEEESCEEECHH
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCcCCcccccCccchHHHHHHHHHHHHhhhhhHhhCccccCCCccCHH
Confidence 4799999999999999999999999999999863200 000 0
Q ss_pred H-----------HHHHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEECC-C-eEEEeeEEEEecCcCCCCC
Q 008860 287 D-----------IRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTNK-G-TVDGFSHVMFATGRRPNTK 346 (551)
Q Consensus 287 ~-----------~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~-G-~~i~~d~vi~a~G~~p~~~ 346 (551)
. +...+.+.+++.||+++.++. ..+ +.+. +.|.+.+ | +++.+|.+|+|||.+|...
T Consensus 87 ~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~-~~~--~~~~-~~v~~~~gg~~~~~~d~lViAtGs~p~~p 155 (474)
T 1zmd_A 87 KMMEQKSTAVKALTGGIAHLFKQNKVVHVNGYG-KIT--GKNQ-VTATKADGGTQVIDTKNILIATGSEVTPF 155 (474)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCEEEESEE-EEE--ETTE-EEEECTTSCEEEEEEEEEEECCCEEECCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEE-EEe--cCCE-EEEEecCCCcEEEEeCEEEECCCCCCCCC
Confidence 0 111235667788999998854 333 2333 6777777 4 5799999999999988754
|
| >4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine dinucleotide, isomerase; HET: FAD UDP; 2.25A {Trypanosoma cruzi} PDB: 4dsh_A* | Back alignment and structure |
|---|
Probab=97.72 E-value=2.6e-05 Score=81.85 Aligned_cols=42 Identities=24% Similarity=0.332 Sum_probs=36.8
Q ss_pred CCccEEEECCChHHHHHHHHHHhCC-CcEEEEccCCCCCCCCCCCCCCCeec
Q 008860 71 YDFDLFTIGAGSGGVRASRFAANFG-ASVAICELPFSTISSETTGGVGGTCV 121 (551)
Q Consensus 71 ~~~dVvIIGgG~aGl~aA~~l~~~G-~~V~liE~~~~~~~~~~~~~~GG~~~ 121 (551)
+++||+|||||++|+++|+.|++.| .+|+|+|+ ...+||.|.
T Consensus 8 ~~~~v~iiG~G~~Gl~~A~~l~~~g~~~v~v~E~---------~~~~GG~~~ 50 (484)
T 4dsg_A 8 LTPKIVIIGAGPTGLGAAVRLTELGYKNWHLYEC---------NDTPGGLSR 50 (484)
T ss_dssp CSCCEEEECCSHHHHHHHHHHHHTTCCSEEEEES---------SSSSSGGGC
T ss_pred cCCCEEEECcCHHHHHHHHHHHHcCCCCEEEEeC---------CCCCCCeee
Confidence 3589999999999999999999998 79999993 556888764
|
| >1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=97.71 E-value=4.7e-05 Score=79.60 Aligned_cols=97 Identities=19% Similarity=0.175 Sum_probs=71.1
Q ss_pred CeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCCC-------------------------------------CCH-H
Q 008860 246 EKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRG-------------------------------------FDE-D 287 (551)
Q Consensus 246 ~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~~-------------------------------------~~~-~ 287 (551)
.+|+|||+|+.|+.+|..|++.|.+|+++++.+.+... .+. .
T Consensus 7 ~dvvIIGaG~aGl~aA~~l~~~g~~V~liE~~~~~GG~~~~~g~~p~k~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 86 (470)
T 1dxl_A 7 NDVVIIGGGPGGYVAAIKAAQLGFKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAKHSFANHGVKVSNVEIDLAA 86 (470)
T ss_dssp CCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSCCSHHHHSHHHHHHHHHHHHHHHHHHHTHHHHTEEESCEEECHHH
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCccccccCcCccchHHHHHHHHHHHHHHHHHHhcCcccCCCccCHHH
Confidence 57999999999999999999999999999998643100 000 0
Q ss_pred -----------HHHHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEECCC--eEEEeeEEEEecCcCCCCC
Q 008860 288 -----------IRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTNKG--TVDGFSHVMFATGRRPNTK 346 (551)
Q Consensus 288 -----------~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~G--~~i~~d~vi~a~G~~p~~~ 346 (551)
+...+.+.+++.|++++.++.+. + +.+. +.|.+.+| +++.+|.+|+|+|.+|...
T Consensus 87 ~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~-~--~~~~-~~v~~~~G~~~~i~~d~lIiAtGs~p~~p 154 (470)
T 1dxl_A 87 MMGQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKF-V--SPSE-ISVDTIEGENTVVKGKHIIIATGSDVKSL 154 (470)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCEEEESCEEE-E--ETTE-EEECCSSSCCEEEECSEEEECCCEEECCB
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEE-e--cCCE-EEEEeCCCceEEEEcCEEEECCCCCCCCC
Confidence 11123456677899999996543 3 2333 66777777 6899999999999988754
|
| >1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=97.71 E-value=7.5e-05 Score=77.70 Aligned_cols=96 Identities=18% Similarity=0.164 Sum_probs=70.7
Q ss_pred CeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCC------------------------------------CCCH-H-
Q 008860 246 EKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLR------------------------------------GFDE-D- 287 (551)
Q Consensus 246 ~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~------------------------------------~~~~-~- 287 (551)
.+++|||+|+.|+.+|..|++.|.+|+++++. .+.. ..+. .
T Consensus 4 ~dvvIIGgG~aGl~aA~~l~~~g~~V~lie~~-~~gG~~~~~g~~p~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 82 (455)
T 1ebd_A 4 TETLVVGAGPGGYVAAIRAAQLGQKVTIVEKG-NLGGVCLNVGCIPSKALISASHRYEQAKHSEEMGIKAENVTIDFAKV 82 (455)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CTTHHHHHTSHHHHHHHHHHHHHHHHHHTCGGGTEECCSCEECHHHH
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCeEEEEECC-CCCCcCcCcCchhhHHHHHHHHHHHHHHHHHhcCcccCCCccCHHHH
Confidence 36999999999999999999999999999986 2100 0010 0
Q ss_pred ----------HHHHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEECCC-eEEEeeEEEEecCcCCCCC
Q 008860 288 ----------IRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTNKG-TVDGFSHVMFATGRRPNTK 346 (551)
Q Consensus 288 ----------~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~G-~~i~~d~vi~a~G~~p~~~ 346 (551)
+.+.+.+.+++.|++++.++.+. + +.+. +.|.+.+| +++.+|.+|+|||.+|...
T Consensus 83 ~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~-i--d~~~-v~V~~~~G~~~i~~d~lViATGs~p~~~ 148 (455)
T 1ebd_A 83 QEWKASVVKKLTGGVEGLLKGNKVEIVKGEAYF-V--DANT-VRVVNGDSAQTYTFKNAIIATGSRPIEL 148 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTCEEEESEEEE-E--ETTE-EEEEETTEEEEEECSEEEECCCEEECCB
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEE-c--cCCe-EEEEeCCCcEEEEeCEEEEecCCCCCCC
Confidence 12223556778899999986543 3 2333 77888888 6799999999999988754
|
| >1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A* | Back alignment and structure |
|---|
Probab=97.70 E-value=6.4e-05 Score=78.85 Aligned_cols=97 Identities=18% Similarity=0.194 Sum_probs=69.3
Q ss_pred CeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccC----------------------------------C--CCCH-H-
Q 008860 246 EKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVL----------------------------------R--GFDE-D- 287 (551)
Q Consensus 246 ~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l----------------------------------~--~~~~-~- 287 (551)
.+|+|||+|+.|+.+|..|++.|.+|+++++.+.+. . .++. .
T Consensus 7 ~dVvIIGaG~aGl~aA~~l~~~G~~V~liE~~~~~GG~~~~~g~~psk~ll~~~~~~~~~~~~~~~gi~~~~~~~~~~~~ 86 (482)
T 1ojt_A 7 YDVVVLGGGPGGYSAAFAAADEGLKVAIVERYKTLGGVCLNVGCIPSKALLHNAAVIDEVRHLAANGIKYPEPELDIDML 86 (482)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSCSSHHHHHHSHHHHHHHHHHHHHHHHHHHGGGGTCCCCCCCCCHHHH
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCCceeeecccchHHHHHHHHHHHHHHHHHhCCcccCCCccCHHHH
Confidence 369999999999999999999999999999854321 0 0111 1
Q ss_pred ----------HHHHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEECCC------------eEEEeeEEEEecCcCCCC
Q 008860 288 ----------IRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTNKG------------TVDGFSHVMFATGRRPNT 345 (551)
Q Consensus 288 ----------~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~G------------~~i~~d~vi~a~G~~p~~ 345 (551)
+...+.+.+++.|++++.++.+. + +.+. +.|.+.+| .++.+|.+|+|+|.+|..
T Consensus 87 ~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~-~--~~~~-v~v~~~~g~~~~~~~~~g~~~~i~ad~lViAtGs~p~~ 162 (482)
T 1ojt_A 87 RAYKDGVVSRLTGGLAGMAKSRKVDVIQGDGQF-L--DPHH-LEVSLTAGDAYEQAAPTGEKKIVAFKNCIIAAGSRVTK 162 (482)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEE-E--ETTE-EEEEEEEEEETTEEEEEEEEEEEEEEEEEECCCEEECC
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCcEEEeeEEEE-c--cCCE-EEEEecCCcccccccccCcceEEEcCEEEECCCCCCCC
Confidence 11123456677899999886543 2 2333 66666566 579999999999999875
Q ss_pred C
Q 008860 346 K 346 (551)
Q Consensus 346 ~ 346 (551)
.
T Consensus 163 ~ 163 (482)
T 1ojt_A 163 L 163 (482)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A* | Back alignment and structure |
|---|
Probab=97.69 E-value=5.5e-05 Score=79.24 Aligned_cols=95 Identities=13% Similarity=0.169 Sum_probs=68.8
Q ss_pred CeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccC----------------------------CC----------CC-H
Q 008860 246 EKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVL----------------------------RG----------FD-E 286 (551)
Q Consensus 246 ~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l----------------------------~~----------~~-~ 286 (551)
.+|+|||+|+.|+.+|..|++.|.+|+++++.+.+- .. ++ .
T Consensus 6 ~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~GG~~~~~g~~psk~l~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~ 85 (478)
T 1v59_A 6 HDVVIIGGGPAGYVAAIKAAQLGFNTACVEKRGKLGGTCLNVGCIPSKALLNNSHLFHQMHTEAQKRGIDVNGDIKINVA 85 (478)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHTSGGGTEEECSCEEECHH
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCcCCccceeccHHHHHHHHHHHHHHHHHHHHHhcCcccCCCCccCHH
Confidence 469999999999999999999999999999854320 00 00 0
Q ss_pred H-----------HHHHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEECCC--eE------EEeeEEEEecCcCCC
Q 008860 287 D-----------IRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTNKG--TV------DGFSHVMFATGRRPN 344 (551)
Q Consensus 287 ~-----------~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~G--~~------i~~d~vi~a~G~~p~ 344 (551)
+ +...+.+.+++.||+++.++.+.. +.+ .+.|.+.+| ++ +.+|.||+|+|.+|.
T Consensus 86 ~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~~---~~~-~v~V~~~~G~~~~~~~~~~i~~d~lViAtGs~p~ 158 (478)
T 1v59_A 86 NFQKAKDDAVKQLTGGIELLFKKNKVTYYKGNGSFE---DET-KIRVTPVDGLEGTVKEDHILDVKNIIVATGSEVT 158 (478)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCEEEESEEEES---SSS-EEEEECCTTCTTCCSSCEEEEEEEEEECCCEEEC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEc---cCC-eEEEEecCCCcccccccceEEeCEEEECcCCCCC
Confidence 0 111234566778999999875531 333 367777777 56 999999999999884
|
| >1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=97.68 E-value=4.1e-05 Score=80.53 Aligned_cols=98 Identities=17% Similarity=0.176 Sum_probs=72.0
Q ss_pred CeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCC----------CCC---HHHHHHHHHHHHhcCcEEEcCcccEEE
Q 008860 246 EKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLR----------GFD---EDIRDFVAEQMSLRGIEFHTEESPQAI 312 (551)
Q Consensus 246 ~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~----------~~~---~~~~~~l~~~l~~~Gv~i~~~~~v~~i 312 (551)
.+|+|||+|+.|+.+|..|++. .+|+++++.+.+.. .++ .++...+.+.+ +.|++++.++.+.++
T Consensus 109 ~dVvIIGgG~aGl~aA~~L~~~-~~V~vie~~~~~GG~~~~~~~~~~g~~~~~~~~~~~l~~~l-~~~v~~~~~~~v~~i 186 (493)
T 1y56_A 109 VDVAIIGGGPAGIGAALELQQY-LTVALIEERGWLGGDMWLKGIKQEGFNKDSRKVVEELVGKL-NENTKIYLETSALGV 186 (493)
T ss_dssp ESCCEECCSHHHHHHHHHHTTT-CCEEEECTTSSSSCSGGGTCSEETTTTEEHHHHHHHHHHTC-CTTEEEETTEEECCC
T ss_pred CCEEEECccHHHHHHHHHHHhc-CCEEEEeCCCCCCCeeeccccccCCCCCCHHHHHHHHHHHH-hcCCEEEcCCEEEEE
Confidence 4799999999999999999999 99999998775411 111 12223333333 569999999999998
Q ss_pred EEcCCceEEEEE-CCCe--EEEeeEEEEecCcCCCCC
Q 008860 313 LKSTDGSLSVKT-NKGT--VDGFSHVMFATGRRPNTK 346 (551)
Q Consensus 313 ~~~~~~~~~V~~-~~G~--~i~~d~vi~a~G~~p~~~ 346 (551)
..+++. +.+.. .+++ .+.+|.+|+|+|..|...
T Consensus 187 ~~~~~~-~~~~~~~~~~~~~~~~d~lvlAtGa~~~~~ 222 (493)
T 1y56_A 187 FDKGEY-FLVPVVRGDKLIEILAKRVVLATGAIDSTM 222 (493)
T ss_dssp EECSSS-EEEEEEETTEEEEEEESCEEECCCEEECCC
T ss_pred EcCCcE-EEEEEecCCeEEEEECCEEEECCCCCccCC
Confidence 876655 33333 4554 689999999999988754
|
| >2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.67 E-value=0.00025 Score=74.20 Aligned_cols=97 Identities=12% Similarity=0.134 Sum_probs=70.2
Q ss_pred CeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCcc--------------------------CC---------------CC
Q 008860 246 EKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKV--------------------------LR---------------GF 284 (551)
Q Consensus 246 ~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~--------------------------l~---------------~~ 284 (551)
.+|+|||+|+.|+.+|..|++.|.+|+++++...- .. .+
T Consensus 12 ~dVvVIGgG~aGl~aA~~l~~~g~~V~liE~~~~GG~~~n~gciP~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 91 (479)
T 2hqm_A 12 YDYLVIGGGSGGVASARRAASYGAKTLLVEAKALGGTCVNVGCVPKKVMWYASDLATRVSHANEYGLYQNLPLDKEHLTF 91 (479)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTSCCEEEEESSCTTHHHHHHSHHHHHHHHHHHHHHHHHTTTTTTTBSTTSCCSGGGCCB
T ss_pred CCEEEEcCCHHHHHHHHHHHHCCCcEEEEeCCCcCCcCcccCcHHHHHHHHHHHHHHHHHhHHhcCcccccccccccCcc
Confidence 47999999999999999999999999999986310 00 00
Q ss_pred CH------------HHHHHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEECCCe--EEEeeEEEEecCcCCCCC
Q 008860 285 DE------------DIRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTNKGT--VDGFSHVMFATGRRPNTK 346 (551)
Q Consensus 285 ~~------------~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~G~--~i~~d~vi~a~G~~p~~~ 346 (551)
+- .+...+.+.+++.|++++.++ +..+ +.+. +.|.+.+|+ ++.+|.+|+|||.+|...
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~-~~~i--~~~~-~~v~~~~g~~~~~~~d~lviAtGs~p~~p 163 (479)
T 2hqm_A 92 NWPEFKQKRDAYVHRLNGIYQKNLEKEKVDVVFGW-ARFN--KDGN-VEVQKRDNTTEVYSANHILVATGGKAIFP 163 (479)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHTTEEEEEEE-EEEC--TTSC-EEEEESSSCCEEEEEEEEEECCCEEECCC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeE-EEEe--eCCE-EEEEeCCCcEEEEEeCEEEEcCCCCCCCC
Confidence 10 111223455677899999884 5444 2333 677777886 799999999999988764
|
| >2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A* | Back alignment and structure |
|---|
Probab=97.67 E-value=2.8e-05 Score=81.98 Aligned_cols=41 Identities=27% Similarity=0.394 Sum_probs=36.4
Q ss_pred CCccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCee
Q 008860 71 YDFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTC 120 (551)
Q Consensus 71 ~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~ 120 (551)
..+||+|||||++|+++|..|++.|.+|+|+|+ ...+||.+
T Consensus 32 ~~~~v~IiGaG~~Gl~aA~~l~~~g~~v~vlE~---------~~~~gg~~ 72 (498)
T 2iid_A 32 NPKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEA---------SERPGGRV 72 (498)
T ss_dssp SCCEEEEECCBHHHHHHHHHHHHHTCEEEEECS---------SSSSBTTC
T ss_pred CCCCEEEECCCHHHHHHHHHHHhCCCeEEEEEC---------CCCCCCce
Confidence 457999999999999999999999999999993 56678865
|
| >2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A* | Back alignment and structure |
|---|
Probab=97.67 E-value=0.00015 Score=75.66 Aligned_cols=95 Identities=18% Similarity=0.070 Sum_probs=69.9
Q ss_pred eEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccC---------C---------------------------CCCH----
Q 008860 247 KIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVL---------R---------------------------GFDE---- 286 (551)
Q Consensus 247 ~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l---------~---------------------------~~~~---- 286 (551)
+|+|||+|+.|+.+|..|++.|.+|+++++.. +. | ..+.
T Consensus 5 dvvIIGaG~aGl~aA~~l~~~G~~V~liE~~~-~gG~~~~~g~~psk~ll~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 83 (464)
T 2a8x_A 5 DVVVLGAGPGGYVAAIRAAQLGLSTAIVEPKY-WGGVCLNVGCIPSKALLRNAELVHIFTKDAKAFGISGEVTFDYGIAY 83 (464)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEECSSC-TTHHHHHHSHHHHHHHHHHHHHHHHHHHHTTTTTEEECCEECHHHHH
T ss_pred CEEEECCCHHHHHHHHHHHhCCCeEEEEeCCC-CCCcccccCchhhHHHHHHHHHHHHHHHHHHhcCCCCCCccCHHHHH
Confidence 69999999999999999999999999999862 10 0 0000
Q ss_pred --------HHHHHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEECCC--eEEEeeEEEEecCcCCCCC
Q 008860 287 --------DIRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTNKG--TVDGFSHVMFATGRRPNTK 346 (551)
Q Consensus 287 --------~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~G--~~i~~d~vi~a~G~~p~~~ 346 (551)
.+...+.+.+++.|++++.++.+. + +.+ .+.|.+.+| +++.+|.+|+|+|.+|...
T Consensus 84 ~~~~~~~~~l~~~l~~~~~~~gv~~~~g~~~~-i--d~~-~v~V~~~~G~~~~~~~d~lViAtG~~~~~~ 149 (464)
T 2a8x_A 84 DRSRKVAEGRVAGVHFLMKKNKITEIHGYGTF-A--DAN-TLLVDLNDGGTESVTFDNAIIATGSSTRLV 149 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCEEECEEEEE-S--SSS-EEEEEETTSCCEEEEEEEEEECCCEEECCC
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEE-e--cCC-eEEEEeCCCceEEEEcCEEEECCCCCCCCC
Confidence 011223456777899999986543 2 333 377888888 6899999999999988654
|
| >1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A* | Back alignment and structure |
|---|
Probab=97.65 E-value=2.5e-05 Score=81.29 Aligned_cols=90 Identities=13% Similarity=0.177 Sum_probs=69.6
Q ss_pred CCCeEEEEcCcHHHHHHHHHHHhCC--CeEEEEeecCccC--------CCC--CHHHHHHHHHHHHhcCcEEEcCcccEE
Q 008860 244 KPEKIAIVGGGYIALEFAGIFSGLT--SEVHVFIRQKKVL--------RGF--DEDIRDFVAEQMSLRGIEFHTEESPQA 311 (551)
Q Consensus 244 ~~~~vvViG~G~~g~e~a~~l~~~g--~~Vtlv~~~~~~l--------~~~--~~~~~~~l~~~l~~~Gv~i~~~~~v~~ 311 (551)
.+.+|+|||+|+.|+.+|..|.+.| .+|+++++.+.+. +.+ ..++...+.+.+++.|++++.++.+.
T Consensus 5 ~~~~vvIIG~G~aGl~aA~~l~~~g~~~~V~vie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~- 83 (460)
T 1cjc_A 5 QTPQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVPFGLVRFGVAPDHPEVKNVINTFTQTARSDRCAFYGNVEVG- 83 (460)
T ss_dssp -CCEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSSSCTHHHHTSCTTCGGGGGHHHHHHHHHTSTTEEEEBSCCBT-
T ss_pred CCceEEEECcCHHHHHHHHHHHhcCCCCCEEEEeCCCcCCceeecccCCCCccHHHHHHHHHHHHHhCCcEEEeeeEEe-
Confidence 3578999999999999999999988 8999999987654 222 23566677788889999999997762
Q ss_pred EEEcCCceEEEEECCCeEEEeeEEEEecCcCC
Q 008860 312 ILKSTDGSLSVKTNKGTVDGFSHVMFATGRRP 343 (551)
Q Consensus 312 i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p 343 (551)
.. |.+.+. .+.+|.||+|||..|
T Consensus 84 -----~~---V~~~~~-~~~~d~lVlAtGs~~ 106 (460)
T 1cjc_A 84 -----RD---VTVQEL-QDAYHAVVLSYGAED 106 (460)
T ss_dssp -----TT---BCHHHH-HHHSSEEEECCCCCE
T ss_pred -----eE---EEeccc-eEEcCEEEEecCcCC
Confidence 11 333333 368999999999985
|
| >3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=97.65 E-value=0.00022 Score=74.90 Aligned_cols=95 Identities=20% Similarity=0.173 Sum_probs=68.0
Q ss_pred CeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCC----------------------------CC---------C---
Q 008860 246 EKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLR----------------------------GF---------D--- 285 (551)
Q Consensus 246 ~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~----------------------------~~---------~--- 285 (551)
.+|+|||+|+.|+.+|..|++.|.+|+++++.+.+.. .+ +
T Consensus 26 ~dVvVIGgG~aGl~aA~~la~~G~~V~liEk~~~~GG~~~~~gciP~k~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 105 (491)
T 3urh_A 26 YDLIVIGSGPGGYVCAIKAAQLGMKVAVVEKRSTYGGTCLNVGCIPSKALLHASEMFHQAQHGLEALGVEVANPKLNLQK 105 (491)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHSSGGGTEECCCCEECHHH
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCccccccchhhHHHHHHHHHHHHHHhhHhhcCcccCCCccCHHH
Confidence 5799999999999999999999999999998654310 00 0
Q ss_pred ---------HHHHHHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEECCC--eEEEeeEEEEecCcCCC
Q 008860 286 ---------EDIRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTNKG--TVDGFSHVMFATGRRPN 344 (551)
Q Consensus 286 ---------~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~G--~~i~~d~vi~a~G~~p~ 344 (551)
..+...+...+++.|++++.+... .+ + ...+.|.+.+| +++.+|.||+|||..|.
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~-~~--~-~~~~~v~~~~g~~~~~~~d~lViATGs~p~ 171 (491)
T 3urh_A 106 MMAHKDATVKSNVDGVSFLFKKNKIDGFQGTGK-VL--G-QGKVSVTNEKGEEQVLEAKNVVIATGSDVA 171 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCEEEESEEE-EC--S-SSEEEEECTTSCEEEEECSEEEECCCEECC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEE-Ee--c-CCEEEEEeCCCceEEEEeCEEEEccCCCCC
Confidence 011122345567789999887432 22 2 23377777777 57999999999999874
|
| >2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical bundle, sandwiched sheets, structural genomics; HET: TRP FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A* 2ar8_A* 2ard_A* 2jkc_A* | Back alignment and structure |
|---|
Probab=97.63 E-value=0.00035 Score=74.30 Aligned_cols=55 Identities=16% Similarity=0.154 Sum_probs=44.3
Q ss_pred HHHHHHHHhcCcEEEcCcccEEEEEcCCc-eEEEEECCCeEEEeeEEEEecCcCCCC
Q 008860 290 DFVAEQMSLRGIEFHTEESPQAILKSTDG-SLSVKTNKGTVDGFSHVMFATGRRPNT 345 (551)
Q Consensus 290 ~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~-~~~V~~~~G~~i~~d~vi~a~G~~p~~ 345 (551)
+.+.+.+++.|++++.+ +|+++..++++ .+.|.+.+|+++.+|.||.|+|.....
T Consensus 169 ~~L~~~a~~~gv~~~~~-~v~~i~~~~~g~~~~v~~~~g~~i~ad~vV~A~G~~s~~ 224 (538)
T 2aqj_A 169 DFLKRWAVERGVNRVVD-EVVDVRLNNRGYISNLLTKEGRTLEADLFIDCSGMRGLL 224 (538)
T ss_dssp HHHHHHHHHTTCEEEEC-CEEEEEECTTSCEEEEEETTSCEECCSEEEECCGGGCCC
T ss_pred HHHHHHHHHCCCEEEEe-eEeEEEEcCCCcEEEEEECCCcEEEeCEEEECCCCchhh
Confidence 34555666789999999 89999876554 357888899889999999999998765
|
| >2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A* | Back alignment and structure |
|---|
Probab=97.62 E-value=8e-05 Score=77.49 Aligned_cols=95 Identities=20% Similarity=0.147 Sum_probs=67.7
Q ss_pred eEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCC-----------------------------------CCCH-H---
Q 008860 247 KIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLR-----------------------------------GFDE-D--- 287 (551)
Q Consensus 247 ~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~-----------------------------------~~~~-~--- 287 (551)
+++|||+|+.|+.+|..+++.|.+|+++++.+.+-. ..+. .
T Consensus 3 dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~g~~p~k~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 82 (455)
T 2yqu_A 3 DLLVIGAGPGGYVAAIRAAQLGMKVGVVEKEKALGGTCLRVGCIPSKALLETTERIYEAKKGLLGAKVKGVELDLPALMA 82 (455)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHCCTTEEECCEEECHHHHHH
T ss_pred CEEEECCChhHHHHHHHHHHCCCeEEEEeCCCCCCCccceecchhHHHHHHHHHHHHHHhhhcCCcccCCCccCHHHHHH
Confidence 689999999999999999999999999998753210 0010 1
Q ss_pred --------HHHHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCcCCCCC
Q 008860 288 --------IRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNTK 346 (551)
Q Consensus 288 --------~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~~~ 346 (551)
+...+.+.+++.|++++.++.+ .+ +. ..+.|.+ +|+++.+|.+|+|||.+|...
T Consensus 83 ~~~~~~~~l~~~~~~~~~~~~v~~~~g~~~-~i--~~-~~~~v~~-~g~~~~~d~lviAtG~~p~~~ 144 (455)
T 2yqu_A 83 HKDKVVQANTQGVEFLFKKNGIARHQGTAR-FL--SE-RKVLVEE-TGEELEARYILIATGSAPLIP 144 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCEEEESCEE-ES--SS-SEEEETT-TCCEEEEEEEEECCCEEECCC
T ss_pred HHHHHHHHHHHHHHHHHHhCCCEEEEeEEE-Ee--cC-CeEEEee-CCEEEEecEEEECCCCCCCCC
Confidence 1112345667789999988543 22 22 2255555 677899999999999988654
|
| >1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=97.62 E-value=0.0001 Score=76.83 Aligned_cols=95 Identities=26% Similarity=0.332 Sum_probs=64.6
Q ss_pred ccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhhccCCCcccC
Q 008860 73 FDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDESNGFGWKYG 152 (551)
Q Consensus 73 ~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~~~ 152 (551)
.+|+|||||+.|+.+|..|++.|.+|+|+|+ ...+ +|
T Consensus 172 ~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~---------~~~~---------l~------------------------- 208 (458)
T 1lvl_A 172 QHLVVVGGGYIGLELGIAYRKLGAQVSVVEA---------RERI---------LP------------------------- 208 (458)
T ss_dssp SEEEEECCSHHHHHHHHHHHHHTCEEEEECS---------SSSS---------ST-------------------------
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCeEEEEEc---------CCcc---------cc-------------------------
Confidence 5799999999999999999999999999992 1111 00
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEe-EEEEecCCEEEE---cC--EEEEeCeEEEcCCCCCCCCC
Q 008860 153 TEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIEG-RGKIVDPHTVDV---DG--KLYSARHILISVGGRPFIPD 225 (551)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~i~~~~v~v---~g--~~~~~d~lviAtG~~p~~p~ 225 (551)
..+ +. +...+.+.+++.||+++.+ .+..++...+.+ ++ .++.+|.|++|+|.+|+.+.
T Consensus 209 ---~~~-~~-----------~~~~l~~~l~~~gv~i~~~~~v~~i~~~~v~v~~~~G~~~~i~~D~vv~a~G~~p~~~~ 272 (458)
T 1lvl_A 209 ---TYD-SE-----------LTAPVAESLKKLGIALHLGHSVEGYENGCLLANDGKGGQLRLEADRVLVAVGRRPRTKG 272 (458)
T ss_dssp ---TSC-HH-----------HHHHHHHHHHHHTCEEETTCEEEEEETTEEEEECSSSCCCEECCSCEEECCCEEECCSS
T ss_pred ---ccC-HH-----------HHHHHHHHHHHCCCEEEECCEEEEEEeCCEEEEECCCceEEEECCEEEECcCCCcCCCC
Confidence 001 11 1112233455669998876 455554333444 35 58999999999999887653
|
| >1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=97.61 E-value=0.0001 Score=77.65 Aligned_cols=99 Identities=21% Similarity=0.272 Sum_probs=71.8
Q ss_pred CeEEEEcCcHHHHHHHHHHHhC---CCeEEEEeecCcc---------------------------CC--CC---------
Q 008860 246 EKIAIVGGGYIALEFAGIFSGL---TSEVHVFIRQKKV---------------------------LR--GF--------- 284 (551)
Q Consensus 246 ~~vvViG~G~~g~e~a~~l~~~---g~~Vtlv~~~~~~---------------------------l~--~~--------- 284 (551)
.+|+|||+|+.|+.+|..|++. |.+|+++++.+ + +. .+
T Consensus 3 ~dVvIIGgG~aGl~aA~~l~~~~~~G~~V~liE~~~-~GG~~~~~g~~psk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~ 81 (499)
T 1xdi_A 3 TRIVILGGGPAGYEAALVAATSHPETTQVTVIDCDG-IGGAAVLDDCVPSKTFIASTGLRTELRRAPHLGFHIDFDDAKI 81 (499)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHCTTTEEEEEEESSC-TTHHHHHTSHHHHHHHHHHHHHHHHHTTTTTTTBC------CB
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCCcCEEEEEeCCC-cCCcccCcCccchHHHHHHHHHHHHHHHHHhCCCccccCCCcc
Confidence 3699999999999999999999 99999999874 1 00 01
Q ss_pred CH-H-----------HHHHHHHHHHhcCcEEEcCcccEEEEEc---CCceEEEEECCCe--EEEeeEEEEecCcCCCCC
Q 008860 285 DE-D-----------IRDFVAEQMSLRGIEFHTEESPQAILKS---TDGSLSVKTNKGT--VDGFSHVMFATGRRPNTK 346 (551)
Q Consensus 285 ~~-~-----------~~~~l~~~l~~~Gv~i~~~~~v~~i~~~---~~~~~~V~~~~G~--~i~~d~vi~a~G~~p~~~ 346 (551)
+. . +...+.+.+++.|++++.++ +..+... +++.+.|.+.+|+ .+.+|.+|+|+|..|...
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~-~~~i~~~~~~~~~~~~V~~~~g~~~~~~~d~lviATGs~p~~p 159 (499)
T 1xdi_A 82 SLPQIHARVKTLAAAQSADITAQLLSMGVQVIAGR-GELIDSTPGLARHRIKATAADGSTSEHEADVVLVATGASPRIL 159 (499)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESE-EEECCSSSCCSSEEEEEECTTSCEEEEEESEEEECCCEEECCC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeE-EEEecCcccCCCCEEEEEeCCCcEEEEEeCEEEEcCCCCCCCC
Confidence 11 1 12224566788899999985 5555431 0133667777776 799999999999988654
|
| >2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A* | Back alignment and structure |
|---|
Probab=97.61 E-value=7.9e-05 Score=75.67 Aligned_cols=97 Identities=13% Similarity=0.173 Sum_probs=71.1
Q ss_pred CeEEEEcCcHHHHHHHHHHHhCC--CeEEEEeecCcc------CCC-C----C-HHHHH-HHHHHHHhcCcEEEcCcccE
Q 008860 246 EKIAIVGGGYIALEFAGIFSGLT--SEVHVFIRQKKV------LRG-F----D-EDIRD-FVAEQMSLRGIEFHTEESPQ 310 (551)
Q Consensus 246 ~~vvViG~G~~g~e~a~~l~~~g--~~Vtlv~~~~~~------l~~-~----~-~~~~~-~l~~~l~~~Gv~i~~~~~v~ 310 (551)
.+++|||+|+.|+.+|..|++.| .+|+++++.+.. ++. + . .++.. .+.+.+++.|++++.++++.
T Consensus 5 ~dvvIIG~G~aGl~aA~~l~~~g~~~~V~lie~~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~ 84 (384)
T 2v3a_A 5 APLVIIGTGLAGYNLAREWRKLDGETPLLMITADDGRSYSKPMLSTGFSKNKDADGLAMAEPGAMAEQLNARILTHTRVT 84 (384)
T ss_dssp CCEEEECCSHHHHHHHHHHHTTCSSSCEEEECSSCCCEECGGGGGGTTTTTCCHHHHEEECHHHHHHHTTCEEECSCCCC
T ss_pred CcEEEECChHHHHHHHHHHHhhCCCCCEEEEECCCCCccCcccccHHHhCCCCHHHhhccCHHHHHHhCCcEEEeCCEEE
Confidence 57999999999999999999998 568999875421 111 1 1 11111 23455678899999999999
Q ss_pred EEEEcCCceEEEEECCCeEEEeeEEEEecCcCCCCC
Q 008860 311 AILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNTK 346 (551)
Q Consensus 311 ~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~~~ 346 (551)
.++.++. .|.+.+ .++.+|.+|+|||.+|...
T Consensus 85 ~i~~~~~---~v~~~~-~~~~~d~lviAtG~~p~~p 116 (384)
T 2v3a_A 85 GIDPGHQ---RIWIGE-EEVRYRDLVLAWGAEPIRV 116 (384)
T ss_dssp EEEGGGT---EEEETT-EEEECSEEEECCCEEECCC
T ss_pred EEECCCC---EEEECC-cEEECCEEEEeCCCCcCCC
Confidence 9976543 355554 4699999999999988754
|
| >3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein; HET: AHZ; 2.70A {Neurospora crassa} | Back alignment and structure |
|---|
Probab=97.56 E-value=0.00036 Score=68.91 Aligned_cols=158 Identities=13% Similarity=0.114 Sum_probs=99.1
Q ss_pred CeEEEEcCcHHHHHHHHHHHhC--CCeEEEEeecCccCCC--------------------------------------CC
Q 008860 246 EKIAIVGGGYIALEFAGIFSGL--TSEVHVFIRQKKVLRG--------------------------------------FD 285 (551)
Q Consensus 246 ~~vvViG~G~~g~e~a~~l~~~--g~~Vtlv~~~~~~l~~--------------------------------------~~ 285 (551)
..|+|||+|..|+.+|..|++. |.+|.++++.+.+... ..
T Consensus 80 ~DVvIVGgG~AGL~aA~~La~~~~G~~V~LiEk~~~~GGg~~~~g~~~~~~~~~~~~~~~L~~~Gv~~~~~G~~~~~~~~ 159 (344)
T 3jsk_A 80 TDIVIVGAGSCGLSAAYVLSTLRPDLRITIVEAGVAPGGGAWLGGQLFSAMVMRKPADVFLDEVGVPYEDEGDYVVVKHA 159 (344)
T ss_dssp CSEEEECCSHHHHHHHHHHHHHCTTSCEEEEESSSSCCTTTTCCBTTCCCEEEETTTHHHHHHHTCCCEECSSEEEESCH
T ss_pred CCEEEECccHHHHHHHHHHHhcCCCCEEEEEeCCCccCCccccCCccchhhhcchHHHHHHHHcCCcccccCCeEEEecH
Confidence 3699999999999999999997 9999999987532100 01
Q ss_pred HHHHHHHHHHHHh-cCcEEEcCcccEEEEEcCC-------------------ceEEEEE------C--------CCeEEE
Q 008860 286 EDIRDFVAEQMSL-RGIEFHTEESPQAILKSTD-------------------GSLSVKT------N--------KGTVDG 331 (551)
Q Consensus 286 ~~~~~~l~~~l~~-~Gv~i~~~~~v~~i~~~~~-------------------~~~~V~~------~--------~G~~i~ 331 (551)
.++.+.+.+.+++ .|++++.++.++++..+++ .+..|.+ . +..++.
T Consensus 160 ~d~~~~L~~~a~~~~gV~i~~~~~V~dLi~~~d~~~~~~~~~~g~~~~~g~~rV~GVv~~~~~v~~~g~~~~~~d~~~i~ 239 (344)
T 3jsk_A 160 ALFTSTVLSKVLQRPNVKLFNATTVEDLITRKHHAESSSSSDDGEAEDEAKVRIAGVVTNWTLVSMHHDDQSAMDPNTIN 239 (344)
T ss_dssp HHHHHHHHHHHHTCTTEEEEETEEEEEEEEEEC----------------CCEEEEEEEEEEHHHHTTSSSSSCCBCEEEE
T ss_pred HHHHHHHHHHHHhCCCCEEEeCCEEEEEEecCCcccccccccccccccCCCceEeEEEeeeeeeeccCCcccccCceEEE
Confidence 2334556666666 5999999999999876552 2233433 1 234799
Q ss_pred eeEEEEecCcCCCCC-CC--CccccCee--ecCCCCeEeC-------CCCCCCCCcEEEeCcCCCC--------CCChHH
Q 008860 332 FSHVMFATGRRPNTK-NL--GLEKVGVK--MTKNGAIEVD-------EYSGTAVPSIWAVGDVTDR--------INLTPV 391 (551)
Q Consensus 332 ~d~vi~a~G~~p~~~-~l--~l~~~gl~--~~~~G~i~vd-------~~~~t~~~~vya~GD~~~~--------~~~~~~ 391 (551)
++.||.|+|...... ++ .+...++. +...+..+.+ ++-+--+|++|++|=.+.. |.+. .
T Consensus 240 Ak~VV~ATG~~s~v~~~~~~~l~~~~~~~~~~g~~~~~~~~~e~~~v~~t~~v~~gl~~~gm~~~~~~g~~rmgp~fg-~ 318 (344)
T 3jsk_A 240 APVIISTTGHDGPFGAFSVKRLVSMKQMERLNGMRGLDMQSAEDAIVNNTREIVPGLIVGGMELSEIDGANRMGPTFG-A 318 (344)
T ss_dssp CSEEEECCCSSSSSSCHHHHHHHHTTSSSCCCCCEEECHHHHHHHHHHTCEEEETTEEECGGGHHHHHTCEECCSCCH-H
T ss_pred cCEEEECCCCCchhhHHHHHHHhhcCcccccCCCcccccccchhhhcccCceEcCCEEEechhhHhhcCCCCCCcccc-e
Confidence 999999999876531 10 01122221 1111112221 1111136999999987651 2222 3
Q ss_pred HHHhHHHHHHHHc
Q 008860 392 ALMEGGALAKTLF 404 (551)
Q Consensus 392 A~~~g~~aa~~i~ 404 (551)
=...|+.+|+.++
T Consensus 319 m~~sg~~~a~~~~ 331 (344)
T 3jsk_A 319 MALSGVKAAHEAI 331 (344)
T ss_dssp HHHHHHHHHHHHH
T ss_pred eeecCHHHHHHHH
Confidence 3477888888776
|
| >1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase, oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays} SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A* 1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A* | Back alignment and structure |
|---|
Probab=97.55 E-value=5.6e-05 Score=79.08 Aligned_cols=55 Identities=20% Similarity=0.204 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHhc--------CcEEEcCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCcC
Q 008860 287 DIRDFVAEQMSLR--------GIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRR 342 (551)
Q Consensus 287 ~~~~~l~~~l~~~--------Gv~i~~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~ 342 (551)
.+.+.+.+.+.+. |.+++++++|++|..++++ +.|++.+|+++.+|.||+|++..
T Consensus 207 ~l~~~l~~~l~~~~~~~~~i~~~~i~~~~~V~~i~~~~~~-v~v~~~~g~~~~ad~vI~a~~~~ 269 (472)
T 1b37_A 207 AVVYYLAGQYLKTDDKSGKIVDPRLQLNKVVREIKYSPGG-VTVKTEDNSVYSADYVMVSASLG 269 (472)
T ss_dssp HHHHHHHHTTSCBCTTTCCBCCTTEESSCCEEEEEECSSC-EEEEETTSCEEEESEEEECSCHH
T ss_pred HHHHHHHHhccccccccccccccEEEcCCEEEEEEEcCCc-EEEEECCCCEEEcCEEEEecCHH
Confidence 4555566655544 7899999999999987777 77999999889999999999863
|
| >1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A* | Back alignment and structure |
|---|
Probab=97.52 E-value=0.00045 Score=71.65 Aligned_cols=94 Identities=13% Similarity=0.209 Sum_probs=66.8
Q ss_pred CeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCC----------------------------C---------CC---
Q 008860 246 EKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLR----------------------------G---------FD--- 285 (551)
Q Consensus 246 ~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~----------------------------~---------~~--- 285 (551)
.+++|||+|+.|+.+|..|++.|.+|+++++.. +.. . ++
T Consensus 5 ~dvvIIGgG~aGl~aA~~l~~~g~~V~liE~~~-~GG~~~~~gciP~k~l~~~a~~~~~~~~~~~~~g~~~~~~~~~~~~ 83 (450)
T 1ges_A 5 YDYIAIGGGSGGIASINRAAMYGQKCALIEAKE-LGGTCVNVGCVPKKVMWHAAQIREAIHMYGPDYGFDTTINKFNWET 83 (450)
T ss_dssp EEEEEECCSHHHHHHHHHHHTTTCCEEEEESSC-TTHHHHHHSHHHHHHHHHHHHHHHHHHTTGGGGTEEEEEEEECHHH
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCeEEEEcCCC-CCCcccccCccChHHHHHHHHHHHHHHHHHHhcCccCCCCccCHHH
Confidence 479999999999999999999999999999863 100 0 00
Q ss_pred ---------HHHHHHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCcCCCCCC
Q 008860 286 ---------EDIRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNTKN 347 (551)
Q Consensus 286 ---------~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~~~~ 347 (551)
..+...+.+.+++.|++++.++ +..+. .. .|.+ +|+++.+|.+|+|||.+|....
T Consensus 84 l~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~-~~~i~--~~---~v~~-~g~~~~~d~lviAtGs~p~~p~ 147 (450)
T 1ges_A 84 LIASRTAYIDRIHTSYENVLGKNNVDVIKGF-ARFVD--AK---TLEV-NGETITADHILIATGGRPSHPD 147 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCEEEESC-CEEEE--TT---EEEE-TTEEEEEEEEEECCCEEECCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCEEEEeE-EEEec--CC---EEEE-CCEEEEeCEEEECCCCCCCCCC
Confidence 0111123345577899999884 44453 22 2444 6778999999999999887643
|
| >1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A* | Back alignment and structure |
|---|
Probab=97.51 E-value=4.1e-05 Score=79.64 Aligned_cols=91 Identities=18% Similarity=0.152 Sum_probs=69.8
Q ss_pred CCeEEEEcCcHHHHHHHHHHHh-C------CCeEEEEeecCccC--------CC--CCHHHHHHHHHHHHhcCcEEEcCc
Q 008860 245 PEKIAIVGGGYIALEFAGIFSG-L------TSEVHVFIRQKKVL--------RG--FDEDIRDFVAEQMSLRGIEFHTEE 307 (551)
Q Consensus 245 ~~~vvViG~G~~g~e~a~~l~~-~------g~~Vtlv~~~~~~l--------~~--~~~~~~~~l~~~l~~~Gv~i~~~~ 307 (551)
+++|+|||+|+.|+.+|..|.+ . |.+|+++++.+.+. +. ...++...+.+.+++.|++++.+.
T Consensus 3 ~~~VvIIG~G~aGl~aA~~L~~~~~~~~~~g~~V~lie~~~~~gg~~~~gv~p~~~~~~~~~~~~~~~~~~~~v~~~~~v 82 (456)
T 1lqt_A 3 PYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPWGLVRSGVAPDHPKIKSISKQFEKTAEDPRFRFFGNV 82 (456)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSSCSTHHHHTSCTTCTGGGGGHHHHHHHHTSTTEEEEESC
T ss_pred CCEEEEECcCHHHHHHHHHHHhhCccccCCCCeEEEEecCCCCCCccccccCCCCCCHHHHHHHHHHHHhcCCCEEEeeE
Confidence 4689999999999999999999 7 99999999986543 21 234567778888888999999885
Q ss_pred ccEEEEEcCCceEEEEECCCeEEEeeEEEEecCcC-CCC
Q 008860 308 SPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRR-PNT 345 (551)
Q Consensus 308 ~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~-p~~ 345 (551)
.+ +.. |.+.++ .+.+|.||+|||.. |..
T Consensus 83 ~v------~~~---v~~~~~-~~~~d~lViAtG~~~~~~ 111 (456)
T 1lqt_A 83 VV------GEH---VQPGEL-SERYDAVIYAVGAQSDRM 111 (456)
T ss_dssp CB------TTT---BCHHHH-HHHSSEEEECCCCCEECC
T ss_pred EE------CCE---EEECCC-eEeCCEEEEeeCCCCCCC
Confidence 53 222 444455 37899999999997 443
|
| >1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A* | Back alignment and structure |
|---|
Probab=97.51 E-value=0.00031 Score=74.42 Aligned_cols=96 Identities=16% Similarity=0.212 Sum_probs=69.8
Q ss_pred CeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCcc---------------------------------CCCC------CH
Q 008860 246 EKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKV---------------------------------LRGF------DE 286 (551)
Q Consensus 246 ~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~---------------------------------l~~~------~~ 286 (551)
.+|+|||+|+.|+.+|..|++.|.+|+++++.+.+ ++.+ ..
T Consensus 44 ~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~GG~~~~~g~~p~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 123 (523)
T 1mo9_A 44 YDAIFIGGGAAGRFGSAYLRAMGGRQLIVDRWPFLGGSCPHNACVPHHLFSDCAAELMLARTFSGQYWFPDMTEKVVGIK 123 (523)
T ss_dssp BSEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSCHHHHHSHHHHHHHHHHHHHHHHHHHTTTSTTCCCCTTCCCCHH
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCCCcccccCcCchHHHHHHHHHHHHHhhhhhcCcHHHHHhhhhhHH
Confidence 57999999999999999999999999999998732 1110 11
Q ss_pred HHHHHH----H---HHH-----HhcCcEEEcCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCcCCCCCC
Q 008860 287 DIRDFV----A---EQM-----SLRGIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNTKN 347 (551)
Q Consensus 287 ~~~~~l----~---~~l-----~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~~~~ 347 (551)
++.+.+ . +.+ ++.|++++++.++..+.. . .|.+. |+++.+|.+|+|||.+|....
T Consensus 124 ~~~~~l~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~i~~--~---~v~~~-g~~~~~d~lViATGs~p~~p~ 190 (523)
T 1mo9_A 124 EVVDLFRAGRNGPHGIMNFQSKEQLNLEYILNCPAKVIDN--H---TVEAA-GKVFKAKNLILAVGAGPGTLD 190 (523)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHTSCCCEEESSCCEEEET--T---EEEET-TEEEEBSCEEECCCEECCCCC
T ss_pred HHHHHHHhhhhhhhhhhhhcccccCCcEEEEeeEEEEeeC--C---EEEEC-CEEEEeCEEEECCCCCCCCCC
Confidence 222222 2 455 778999996668877752 2 24444 678999999999999887643
|
| >4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens} | Back alignment and structure |
|---|
Probab=97.51 E-value=5.8e-05 Score=77.03 Aligned_cols=31 Identities=32% Similarity=0.386 Sum_probs=29.5
Q ss_pred ccEEEECCChHHHHHHHHHHhCCCcEEEEcc
Q 008860 73 FDLFTIGAGSGGVRASRFAANFGASVAICEL 103 (551)
Q Consensus 73 ~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~ 103 (551)
.+|+||||||+|+++|..|++.|++|+|+|+
T Consensus 2 m~V~IVGaGpaGl~~A~~L~~~G~~v~v~Er 32 (412)
T 4hb9_A 2 MHVGIIGAGIGGTCLAHGLRKHGIKVTIYER 32 (412)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECS
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCCEEEEec
Confidence 4799999999999999999999999999994
|
| >3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A* | Back alignment and structure |
|---|
Probab=97.47 E-value=0.00022 Score=75.45 Aligned_cols=98 Identities=19% Similarity=0.161 Sum_probs=68.0
Q ss_pred CeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCc--------cC------------------------------------
Q 008860 246 EKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKK--------VL------------------------------------ 281 (551)
Q Consensus 246 ~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~--------~l------------------------------------ 281 (551)
-.|+|||+|+.|+.+|..+++.|.+|+++++.+. +-
T Consensus 33 ~DVvVIGgGpaGl~aA~~la~~G~~V~liEk~~~~~~~~~~~~GGtc~~~GciPsk~l~~~~~~~~~~~~~~~~g~~~~~ 112 (519)
T 3qfa_A 33 YDLIIIGGGSGGLAAAKEAAQYGKKVMVLDFVTPTPLGTRWGLGGTCVNVGCIPKKLMHQAALLGQALQDSRNYGWKVEE 112 (519)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEECCCCCCTTCCCCCTTCHHHHHSHHHHHHHHHHHHHHHHHHHHHHTTBCCCS
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCeEEEEeccCccccccCCCcccccCCcCccchHHHHHHHHHHHHHHHHHhcCcccCC
Confidence 4799999999999999999999999999997430 00
Q ss_pred -CCCCH------------HHHHHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEECCCe--EEEeeEEEEecCcCCCCC
Q 008860 282 -RGFDE------------DIRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTNKGT--VDGFSHVMFATGRRPNTK 346 (551)
Q Consensus 282 -~~~~~------------~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~G~--~i~~d~vi~a~G~~p~~~ 346 (551)
..++- .+...+...++..||+++.+. +..+. .+. +.|.+.+|+ ++.+|.||+|||.+|...
T Consensus 113 ~~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~gV~~i~g~-a~~~d--~~~-v~v~~~~g~~~~i~~d~lViATGs~p~~p 188 (519)
T 3qfa_A 113 TVKHDWDRMIEAVQNHIGSLNWGYRVALREKKVVYENAY-GQFIG--PHR-IKATNNKGKEKIYSAERFLIATGERPRYL 188 (519)
T ss_dssp SCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECSE-EEEEE--TTE-EEEECTTCCCCEEEEEEEEECCCEEECCC
T ss_pred cCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEE-EEEee--CCE-EEEEcCCCCEEEEECCEEEEECCCCcCCC
Confidence 00010 011112345667899998773 44332 222 667777775 799999999999988764
Q ss_pred C
Q 008860 347 N 347 (551)
Q Consensus 347 ~ 347 (551)
.
T Consensus 189 ~ 189 (519)
T 3qfa_A 189 G 189 (519)
T ss_dssp C
T ss_pred C
Confidence 3
|
| >1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A* | Back alignment and structure |
|---|
Probab=97.47 E-value=5.4e-05 Score=86.67 Aligned_cols=93 Identities=23% Similarity=0.370 Sum_probs=71.8
Q ss_pred CCeEEEEcCcHHHHHHHHHHHhCCC-eEEEEeecCccC-------CC--CCHHHHHHHHHHHHhcCcEEEcCcccEEEEE
Q 008860 245 PEKIAIVGGGYIALEFAGIFSGLTS-EVHVFIRQKKVL-------RG--FDEDIRDFVAEQMSLRGIEFHTEESPQAILK 314 (551)
Q Consensus 245 ~~~vvViG~G~~g~e~a~~l~~~g~-~Vtlv~~~~~~l-------~~--~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~ 314 (551)
.++|+|||+|+.|+.+|..|++.|. +|+++++.+.+. +. ++.++.+...+.+++.||+++.++.+..
T Consensus 187 ~~~VvVIGgGpAGl~aA~~L~~~G~~~Vtv~E~~~~~GG~~~~~ip~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~--- 263 (1025)
T 1gte_A 187 SAKIALLGAGPASISCASFLARLGYSDITIFEKQEYVGGLSTSEIPQFRLPYDVVNFEIELMKDLGVKIICGKSLSE--- 263 (1025)
T ss_dssp GCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSCSTHHHHTSCTTTSCHHHHHHHHHHHHTTTCEEEESCCBST---
T ss_pred CCEEEEECccHHHHHHHHHHHhcCCCcEEEEeCCCCCCccccccCCcccCCHHHHHHHHHHHHHCCcEEEcccEecc---
Confidence 4689999999999999999999999 799999976542 21 3556666677888999999999977631
Q ss_pred cCCceEEEEECCCeEEEeeEEEEecCc-CCCC
Q 008860 315 STDGSLSVKTNKGTVDGFSHVMFATGR-RPNT 345 (551)
Q Consensus 315 ~~~~~~~V~~~~G~~i~~d~vi~a~G~-~p~~ 345 (551)
.. +++.+++++.+|.||+|||. .|..
T Consensus 264 --~~---v~~~~~~~~~~d~vvlAtGa~~p~~ 290 (1025)
T 1gte_A 264 --NE---ITLNTLKEEGYKAAFIGIGLPEPKT 290 (1025)
T ss_dssp --TS---BCHHHHHHTTCCEEEECCCCCEECC
T ss_pred --ce---EEhhhcCccCCCEEEEecCCCCCCC
Confidence 11 33444445789999999998 4754
|
| >2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A* | Back alignment and structure |
|---|
Probab=97.46 E-value=0.00034 Score=72.90 Aligned_cols=93 Identities=19% Similarity=0.246 Sum_probs=66.5
Q ss_pred CeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccC--------------------------------C----CCCH---
Q 008860 246 EKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVL--------------------------------R----GFDE--- 286 (551)
Q Consensus 246 ~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l--------------------------------~----~~~~--- 286 (551)
.+|+|||+|+.|+.+|..|++.|.+|+++++.. +. . ..+-
T Consensus 5 ~dVvIIGgG~aGl~aA~~l~~~g~~V~liE~~~-~GG~~~~~gciP~k~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~ 83 (463)
T 2r9z_A 5 FDLIAIGGGSGGLAVAEKAAAFGKRVALIESKA-LGGTCVNVGCVPKKVMWYASHLAEAVRDAPGFGVQASGGTLDWPRL 83 (463)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSC-TTHHHHHHSHHHHHHHHHHHHHHHHHHHGGGGTBCCC---CCHHHH
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEcCCC-CCCcCcCcCchhHHHHHHHHHHHHHHhhhhhcCcccCCCCcCHHHH
Confidence 479999999999999999999999999999863 10 0 0110
Q ss_pred ---------HHHHHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCcCCCCC
Q 008860 287 ---------DIRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNTK 346 (551)
Q Consensus 287 ---------~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~~~ 346 (551)
.+...+.+.+++.||+++.++ +..+. .. .|.+ +|+++.+|.+|+|||.+|...
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~-~~~i~--~~---~v~~-~g~~~~~d~lviAtGs~p~~p 145 (463)
T 2r9z_A 84 VAGRDRYIGAINSFWDGYVERLGITRVDGH-ARFVD--AH---TIEV-EGQRLSADHIVIATGGRPIVP 145 (463)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCEEEESC-EEEEE--TT---EEEE-TTEEEEEEEEEECCCEEECCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCEEEEeE-EEEcc--CC---EEEE-CCEEEEcCEEEECCCCCCCCC
Confidence 111223445677899999884 44442 22 2444 677899999999999988764
|
| >2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A* | Back alignment and structure |
|---|
Probab=97.45 E-value=0.00027 Score=73.62 Aligned_cols=93 Identities=18% Similarity=0.165 Sum_probs=65.9
Q ss_pred CeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccC---------C--------------------------CCCH-HHH
Q 008860 246 EKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVL---------R--------------------------GFDE-DIR 289 (551)
Q Consensus 246 ~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l---------~--------------------------~~~~-~~~ 289 (551)
.+++|||+|+.|+.+|..+++.|.+|+++++.+ +. | ..+. .+.
T Consensus 7 ~dvvIIG~G~aG~~aA~~l~~~g~~V~lie~~~-~GG~~~~~g~iP~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 85 (464)
T 2eq6_A 7 YDLIVIGTGPGGYHAAIRAAQLGLKVLAVEAGE-VGGVCLNVGCIPTKALLHAAETLHHLKVAEGFGLKAKPELDLKKLG 85 (464)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSC-TTHHHHHTSHHHHHHHHHHHHHHHHHHHHGGGTEECCCEECHHHHH
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCC-CCCCCCCcChHHHHHHHHHHHHHHHHHhHHhcCCCCCCCcCHHHHH
Confidence 479999999999999999999999999999875 10 0 0010 010
Q ss_pred -----------HHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCcCCCCC
Q 008860 290 -----------DFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNTK 346 (551)
Q Consensus 290 -----------~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~~~ 346 (551)
..+.+.+++.||+++.++.+ .+ +.+ .|.+. |+++.+|.+|+|||.+|...
T Consensus 86 ~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~-~~--~~~---~v~v~-g~~~~~d~lViATGs~p~~p 146 (464)
T 2eq6_A 86 GWRDQVVKKLTGGVGTLLKGNGVELLRGFAR-LV--GPK---EVEVG-GERYGAKSLILATGSEPLEL 146 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCEEEESCEE-EE--ETT---EEEET-TEEEEEEEEEECCCEEECCB
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCEEEeeeEE-Ec--cCC---EEEEc-cEEEEeCEEEEcCCCCCCCC
Confidence 11244567789999988543 33 222 24444 67899999999999988753
|
| >3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae} | Back alignment and structure |
|---|
Probab=97.44 E-value=0.00032 Score=73.48 Aligned_cols=92 Identities=12% Similarity=0.167 Sum_probs=67.7
Q ss_pred CeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCC------------------------------------CCC----
Q 008860 246 EKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLR------------------------------------GFD---- 285 (551)
Q Consensus 246 ~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~------------------------------------~~~---- 285 (551)
.+|+|||+|+.|+.+|..|++.|.+|+++++.. +.. .++
T Consensus 27 ~DVvVIGgG~aGl~aA~~la~~G~~V~liEk~~-~GG~~~~~gcip~k~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~ 105 (484)
T 3o0h_A 27 FDLFVIGSGSGGVRAARLAGALGKRVAIAEEYR-IGGTCVIRGCVPKKLYFYASQYAQEFSKSIGFGWKYADPIFNWEKL 105 (484)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSC-TTHHHHHHSHHHHHHHHHHHHHHHHHHHHGGGTBCCCCCEECHHHH
T ss_pred CCEEEECcCHHHHHHHHHHHhCcCEEEEEeCCC-CCCceeccCccccHHHHHHHHHHHHHHHHHhCCcccCCCccCHHHH
Confidence 479999999999999999999999999999832 100 000
Q ss_pred --------HHHHHHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEEC-CCeEEEeeEEEEecCcCCC
Q 008860 286 --------EDIRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTN-KGTVDGFSHVMFATGRRPN 344 (551)
Q Consensus 286 --------~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~-~G~~i~~d~vi~a~G~~p~ 344 (551)
..+...+.+.+++.|++++.+ .+..+. .. .+.+. +++.+.+|.+|+|+|..|.
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~g-~~~~i~--~~---~v~v~~~~~~~~~d~lviAtG~~p~ 167 (484)
T 3o0h_A 106 VAAKNKEISRLEGLYREGLQNSNVHIYES-RAVFVD--EH---TLELSVTGERISAEKILIATGAKIV 167 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCEEEES-CEEEEE--TT---EEEETTTCCEEEEEEEEECCCEEEC
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCEEEEe-EEEEee--CC---EEEEecCCeEEEeCEEEEccCCCcc
Confidence 122333556677889999988 555553 22 25554 7778999999999999887
|
| >3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A* | Back alignment and structure |
|---|
Probab=97.43 E-value=0.00031 Score=73.46 Aligned_cols=96 Identities=17% Similarity=0.224 Sum_probs=68.3
Q ss_pred CeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCcc----------------------------------CCCC-------
Q 008860 246 EKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKV----------------------------------LRGF------- 284 (551)
Q Consensus 246 ~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~----------------------------------l~~~------- 284 (551)
-.|+|||+|+.|+.+|..|++.|.+|+++++.+.+ +..+
T Consensus 4 ~DVvVIGgG~aGl~aA~~la~~G~~V~liEk~~~~gG~~~~GG~~~~~gciPsk~l~~~~~~~~~~~~~~~~~g~~~~~~ 83 (476)
T 3lad_A 4 FDVIVIGAGPGGYVAAIKSAQLGLKTALIEKYKGKEGKTALGGTCLNVGCIPSKALLDSSYKFHEAHESFKLHGISTGEV 83 (476)
T ss_dssp CSEEEECCSHHHHHHHHHHHHHTCCEEEEECCBCTTSSBCCSHHHHHHSHHHHHHHHHHHHHHHHHHTTSGGGTEECSCC
T ss_pred CCEEEECcCHHHHHHHHHHHhCCCEEEEEeCCCccCCCCCcCCccccccHHHHHHHHHHHHHHHHHHHHHHhcCcccCCC
Confidence 36999999999999999999999999999987510 0000
Q ss_pred --C------------HHHHHHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEECCC--eEEEeeEEEEecCcCCCC
Q 008860 285 --D------------EDIRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTNKG--TVDGFSHVMFATGRRPNT 345 (551)
Q Consensus 285 --~------------~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~G--~~i~~d~vi~a~G~~p~~ 345 (551)
+ ..+...+...+++.|++++.+..+ .+ +.+. +.|.+.+| +++.+|.+|+|||.+|..
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~-~~--~~~~-~~v~~~~g~~~~~~~d~lvlAtG~~p~~ 156 (476)
T 3lad_A 84 AIDVPTMIARKDQIVRNLTGGVASLIKANGVTLFEGHGK-LL--AGKK-VEVTAADGSSQVLDTENVILASGSKPVE 156 (476)
T ss_dssp EECHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEESEEE-EC--STTC-EEEECTTSCEEEECCSCEEECCCEEECC
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEE-Ee--cCCE-EEEEcCCCceEEEEcCEEEEcCCCCCCC
Confidence 0 011122335567789999888432 22 3333 77777777 578999999999998864
|
| >3g3e_A D-amino-acid oxidase; FAD, flavoprotein, oxidoreductase, PER; HET: FAD G3E; 2.20A {Homo sapiens} PDB: 3cuk_A* 2e48_A* 2e49_A* 2e4a_A* 2e82_A* 2du8_A* 1ve9_A* 1dao_A* 1ddo_A* 1kif_A* 1an9_A* 1evi_A* | Back alignment and structure |
|---|
Probab=97.43 E-value=6.5e-05 Score=75.17 Aligned_cols=48 Identities=15% Similarity=0.345 Sum_probs=36.9
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCcCCCC
Q 008860 285 DEDIRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNT 345 (551)
Q Consensus 285 ~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~~ 345 (551)
+..+...+.+.+++.|++++. ++|++++..+ .+.+|.||+|+|.....
T Consensus 141 p~~~~~~l~~~~~~~Gv~i~~-~~V~~i~~~~------------~~~a~~VV~A~G~~s~~ 188 (351)
T 3g3e_A 141 GKNYLQWLTERLTERGVKFFQ-RKVESFEEVA------------REGADVIVNCTGVWAGA 188 (351)
T ss_dssp HHHHHHHHHHHHHHTTCEEEE-CCCCCHHHHH------------HTTCSEEEECCGGGGGG
T ss_pred HHHHHHHHHHHHHHCCCEEEE-EEeCCHHHhh------------cCCCCEEEECCCcChHh
Confidence 456778888999999999998 7887774321 16689999999986643
|
| >2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A | Back alignment and structure |
|---|
Probab=97.42 E-value=0.00012 Score=79.94 Aligned_cols=42 Identities=31% Similarity=0.501 Sum_probs=36.0
Q ss_pred CCCccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCee
Q 008860 70 HYDFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTC 120 (551)
Q Consensus 70 ~~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~ 120 (551)
...+||+|||||++|+++|..|++.|++|+|+|+ ...+||.+
T Consensus 105 ~~~~~v~viG~G~~gl~~a~~l~~~g~~v~~~e~---------~~~~gg~~ 146 (662)
T 2z3y_A 105 KKTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEA---------RDRVGGRV 146 (662)
T ss_dssp SCCCEEEEECCBHHHHHHHHHHHHTTCEEEEECS---------SSSSBTTC
T ss_pred cCCCeEEEECcCHHHHHHHHHHHHCCCeEEEEec---------CCCCCCcc
Confidence 3468999999999999999999999999999993 45566654
|
| >1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=97.40 E-value=0.00059 Score=71.80 Aligned_cols=94 Identities=15% Similarity=0.235 Sum_probs=64.6
Q ss_pred ccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhhccCCCcccC
Q 008860 73 FDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDESNGFGWKYG 152 (551)
Q Consensus 73 ~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~~~ 152 (551)
.+|+|||||+.|+-+|..|++.|.+|+++|. ...+ +|
T Consensus 177 ~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~---------~~~~---------l~------------------------- 213 (500)
T 1onf_A 177 KKIGIVGSGYIAVELINVIKRLGIDSYIFAR---------GNRI---------LR------------------------- 213 (500)
T ss_dssp SEEEEECCSHHHHHHHHHHHTTTCEEEEECS---------SSSS---------CT-------------------------
T ss_pred CeEEEECChHHHHHHHHHHHHcCCeEEEEec---------CCcc---------Cc-------------------------
Confidence 5799999999999999999999999999992 1110 00
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEeE-EEEecC---C--EEEE-cCEE-EEeCeEEEcCCCCCCCC
Q 008860 153 TEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIEGR-GKIVDP---H--TVDV-DGKL-YSARHILISVGGRPFIP 224 (551)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~i~~---~--~v~v-~g~~-~~~d~lviAtG~~p~~p 224 (551)
.++. . +...+.+.+++.||+++.+. +..++. . .+.+ +++. +.+|.|++|+|.+|+..
T Consensus 214 ---~~d~-~-----------~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~D~vi~a~G~~p~~~ 278 (500)
T 1onf_A 214 ---KFDE-S-----------VINVLENDMKKNNINIVTFADVVEIKKVSDKNLSIHLSDGRIYEHFDHVIYCVGRSPDTE 278 (500)
T ss_dssp ---TSCH-H-----------HHHHHHHHHHHTTCEEECSCCEEEEEESSTTCEEEEETTSCEEEEESEEEECCCBCCTTT
T ss_pred ---ccch-h-----------hHHHHHHHHHhCCCEEEECCEEEEEEEcCCceEEEEECCCcEEEECCEEEECCCCCcCCC
Confidence 0111 1 11223345677799998773 444431 2 3444 6666 99999999999998763
|
| >3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.30A {Chromobacterium violaceum atcc 12472} | Back alignment and structure |
|---|
Probab=97.38 E-value=0.00012 Score=74.22 Aligned_cols=31 Identities=23% Similarity=0.303 Sum_probs=29.2
Q ss_pred ccEEEECCChHHHHHHHHHHhC--CCcEEEEcc
Q 008860 73 FDLFTIGAGSGGVRASRFAANF--GASVAICEL 103 (551)
Q Consensus 73 ~dVvIIGgG~aGl~aA~~l~~~--G~~V~liE~ 103 (551)
+||+|||||++|+++|+.|++. |++|+|+|+
T Consensus 1 ~dV~IVGaG~aGl~~A~~L~~~~~G~~V~v~E~ 33 (381)
T 3c4a_A 1 MKILVIGAGPAGLVFASQLKQARPLWAIDIVEK 33 (381)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECS
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCCCCEEEEEC
Confidence 4899999999999999999998 999999994
|
| >2e5v_A L-aspartate oxidase; archaea, oxidoreductase; HET: FAD; 2.09A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=97.38 E-value=0.00069 Score=70.68 Aligned_cols=98 Identities=18% Similarity=0.254 Sum_probs=71.0
Q ss_pred eEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCcc-------------CCC------------------------------
Q 008860 247 KIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKV-------------LRG------------------------------ 283 (551)
Q Consensus 247 ~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~-------------l~~------------------------------ 283 (551)
.|+|||+|..|+-+|..+++.|.+|+++++...- +..
T Consensus 1 DVvVIG~G~AGl~aA~~la~~G~~V~viek~~~~g~s~~a~Ggi~~~~~~~d~~~~~~~d~l~~g~~~~d~~~v~~~~~~ 80 (472)
T 2e5v_A 1 MIYIIGSGIAGLSAGVALRRAGKKVTLISKRIDGGSTPIAKGGVAASVGSDDSPELHAQDTIRVGDGLCDVKTVNYVTSE 80 (472)
T ss_dssp CEEEECCSHHHHHHHHHHHHTTCCEEEECSSTTCSSGGGCCSCEECCCSTTCCHHHHHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCchHHHHhCCeEEeCCCCCCHHHHHHHHHHhcCCcCCHHHHHHHHHH
Confidence 3899999999999999999999999999876100 000
Q ss_pred --------------C----------------------CHHHHHHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEEC-C
Q 008860 284 --------------F----------------------DEDIRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTN-K 326 (551)
Q Consensus 284 --------------~----------------------~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~-~ 326 (551)
+ ...+.+.+.+.+++.|++++.++.+ ++..+++.+..+... +
T Consensus 81 ~~~~i~~l~~~Gv~~~~~~~~~~g~~~~r~~~~~d~~g~~l~~~L~~~~~~~gv~i~~~~~v-~l~~~~~~v~Gv~v~~~ 159 (472)
T 2e5v_A 81 AKNVIETFESWGFEFEEDLRLEGGHTKRRVLHRTDETGREIFNFLLKLAREEGIPIIEDRLV-EIRVKDGKVTGFVTEKR 159 (472)
T ss_dssp HHHHHHHHHHTTCCCCSSCBCCTTCSSCCEECSSSCHHHHHHHHHHHHHHHTTCCEECCCEE-EEEEETTEEEEEEETTT
T ss_pred HHHHHHHHHHcCCCCCcccccccCcCcCcEEEeCCCCHHHHHHHHHHHHHhCCCEEEECcEE-EEEEeCCEEEEEEEEeC
Confidence 0 0123445556667789999999999 997766553345543 2
Q ss_pred CeEEEeeEEEEecCcCCCC
Q 008860 327 GTVDGFSHVMFATGRRPNT 345 (551)
Q Consensus 327 G~~i~~d~vi~a~G~~p~~ 345 (551)
+.++.+|.||+|+|..+..
T Consensus 160 ~g~~~a~~VVlAtGg~~~~ 178 (472)
T 2e5v_A 160 GLVEDVDKLVLATGGYSYL 178 (472)
T ss_dssp EEECCCSEEEECCCCCGGG
T ss_pred CCeEEeeeEEECCCCCccc
Confidence 2357899999999987754
|
| >1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A* | Back alignment and structure |
|---|
Probab=97.37 E-value=0.0006 Score=71.53 Aligned_cols=97 Identities=16% Similarity=0.136 Sum_probs=66.9
Q ss_pred CeEEEEcCcHHHHHHHHHHHh-CCCeEEEEee--------cCccCC----------------------------------
Q 008860 246 EKIAIVGGGYIALEFAGIFSG-LTSEVHVFIR--------QKKVLR---------------------------------- 282 (551)
Q Consensus 246 ~~vvViG~G~~g~e~a~~l~~-~g~~Vtlv~~--------~~~~l~---------------------------------- 282 (551)
.+|+|||+|+.|+.+|..+++ .|.+|+++++ .+.+-.
T Consensus 4 ~dvvVIGgG~aGl~aA~~la~~~G~~V~liE~~~~~~~~~~~~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~ 83 (490)
T 1fec_A 4 YDLVVIGAGSGGLEAGWNAASLHKKRVAVIDLQKHHGPPHYAALGGTCVNVGCVPKKLMVTGANYMDTIRESAGFGWELD 83 (490)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHHCCCEEEEESCSSSBTTTBSCTTCHHHHHSHHHHHHHHHHHHHHHHHHHGGGGTEECC
T ss_pred ccEEEECCCHHHHHHHHHHHHHcCCEEEEEecccccccccCCCcCccccCCCcchhhHHHHHHHHHHHHHHHHhcCcccC
Confidence 379999999999999999999 9999999992 222100
Q ss_pred ----CCC-HH-----------HHHHHHHHHHhc-CcEEEcCcccEEEEEcCCceEEEEE---CCC---eEEEeeEEEEec
Q 008860 283 ----GFD-ED-----------IRDFVAEQMSLR-GIEFHTEESPQAILKSTDGSLSVKT---NKG---TVDGFSHVMFAT 339 (551)
Q Consensus 283 ----~~~-~~-----------~~~~l~~~l~~~-Gv~i~~~~~v~~i~~~~~~~~~V~~---~~G---~~i~~d~vi~a~ 339 (551)
.++ +. +...+.+.+++. ||+++.++ +..+. .+ .+.+.. .+| +++.+|.+|+||
T Consensus 84 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~gv~~~~g~-~~~i~--~~-~v~v~~~~~~~g~~~~~~~~d~lviAt 159 (490)
T 1fec_A 84 RESVRPNWKALIAAKNKAVSGINDSYEGMFADTEGLTFHQGF-GALQD--NH-TVLVRESADPNSAVLETLDTEYILLAT 159 (490)
T ss_dssp GGGCEECHHHHHHHHHHHHHHHHHHHHHHHHTSTTEEEEESE-EEEEE--TT-EEEEESSSSTTSCEEEEEEEEEEEECC
T ss_pred CcccccCHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEeE-EEEee--CC-EEEEEeeccCCCCceEEEEcCEEEEeC
Confidence 001 01 112234456677 99999885 55553 22 244443 366 679999999999
Q ss_pred CcCCCCC
Q 008860 340 GRRPNTK 346 (551)
Q Consensus 340 G~~p~~~ 346 (551)
|.+|...
T Consensus 160 Gs~p~~p 166 (490)
T 1fec_A 160 GSWPQHL 166 (490)
T ss_dssp CEEECCC
T ss_pred CCCCCCC
Confidence 9988754
|
| >4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=97.36 E-value=0.0003 Score=73.29 Aligned_cols=94 Identities=16% Similarity=0.242 Sum_probs=67.6
Q ss_pred CeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccC------------------------------------CCCC----
Q 008860 246 EKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVL------------------------------------RGFD---- 285 (551)
Q Consensus 246 ~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l------------------------------------~~~~---- 285 (551)
-+|+|||+|+.|+.+|..|++.|.+|+++++.. +- +.++
T Consensus 6 ~DVvVIGaG~aGl~aA~~la~~G~~V~liEk~~-~GG~~~~~gcip~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 84 (463)
T 4dna_A 6 YDLFVIGGGSGGVRSGRLAAALGKKVAIAEEFR-YGGTCVIRGCVPKKLYVYASQFAEHFEDAAGFGWTVGESRFDWAKL 84 (463)
T ss_dssp EEEEEECCSHHHHHHHHHHHTTTCCEEEEESSC-TTHHHHHHSHHHHHHHHHHHHHHHHHHHGGGGTEEECCCEECHHHH
T ss_pred CcEEEECcCHHHHHHHHHHHhCCCEEEEEeCCC-CCCcccccCchhhHHHHHHHHHHHHHHHHHhcCcccCCCCcCHHHH
Confidence 379999999999999999999999999999832 10 0011
Q ss_pred --------HHHHHHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEE-CCCeEEEeeEEEEecCcCCC-CC
Q 008860 286 --------EDIRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKT-NKGTVDGFSHVMFATGRRPN-TK 346 (551)
Q Consensus 286 --------~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~-~~G~~i~~d~vi~a~G~~p~-~~ 346 (551)
..+...+.+.+++.|++++.+ .+..+ +. ..+.+ .+++++.+|.+|+|+|..|. ..
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~gv~~~~g-~~~~i---~~--~~v~~~~~~~~~~~d~lviAtG~~p~~~p 149 (463)
T 4dna_A 85 VAAKEQEIARLEGLYRKGLANAGAEILDT-RAELA---GP--NTVKLLASGKTVTAERIVIAVGGHPSPHD 149 (463)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCEEEES-CEEES---SS--SEEEETTTTEEEEEEEEEECCCEEECCCT
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCEEEEE-EEEEe---eC--CEEEEecCCeEEEeCEEEEecCCCcccCC
Confidence 022233455667789999888 44443 22 23555 57788999999999999887 53
|
| >2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A* | Back alignment and structure |
|---|
Probab=97.35 E-value=0.00042 Score=78.76 Aligned_cols=100 Identities=12% Similarity=0.064 Sum_probs=71.0
Q ss_pred CeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCCC--------C----CHHHHHHHHHHHHhc-CcEEEcCcccEEE
Q 008860 246 EKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRG--------F----DEDIRDFVAEQMSLR-GIEFHTEESPQAI 312 (551)
Q Consensus 246 ~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~~--------~----~~~~~~~l~~~l~~~-Gv~i~~~~~v~~i 312 (551)
.+|+|||+|+.|+.+|..+++.|.+|+++++.+.+... + ..++...+.+.+.+. +++++.+++|..+
T Consensus 129 ~dVvVIGaGpAGl~AA~~la~~G~~V~lie~~~~~GG~~~~~~k~~i~~~~~~~~~~~~~~~l~~~~~v~~~~~~~V~~i 208 (965)
T 2gag_A 129 TDVLVVGAGPAGLAAAREASRSGARVMLLDERAEAGGTLLDTAGEQIDGMDSSAWIEQVTSELAEAEETTHLQRTTVFGS 208 (965)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSSGGGGGSSCCEETTEEHHHHHHHHHHHHHHSTTEEEESSEEEEEE
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCCceeccCCccccCCCCHHHHHHHHHHHHhhcCCcEEEeCCEEEee
Confidence 57999999999999999999999999999987643200 1 123344455566664 9999999999888
Q ss_pred EEcCCceEEEE---------E------CCCeEEEeeEEEEecCcCCCCC
Q 008860 313 LKSTDGSLSVK---------T------NKGTVDGFSHVMFATGRRPNTK 346 (551)
Q Consensus 313 ~~~~~~~~~V~---------~------~~G~~i~~d~vi~a~G~~p~~~ 346 (551)
...+ ....+. + .++.++.+|.||+|||..|...
T Consensus 209 ~~~~-~~~~v~~~~~~~~v~~~~~~~~~~~~~i~~d~lVlATGs~p~~~ 256 (965)
T 2gag_A 209 YDAN-YLIAAQRRTVHLDGPSGPGVSRERIWHIRAKQVVLATGAHERPI 256 (965)
T ss_dssp ETTT-EEEEEEECSTTCSSCCCTTCCSEEEEEEEEEEEEECCCEEECCC
T ss_pred ecCC-ceeeeEeecccccccccccCCCCceEEEECCEEEECCCCccCCC
Confidence 6332 111111 1 1123689999999999987654
|
| >1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 | Back alignment and structure |
|---|
Probab=97.35 E-value=0.00024 Score=77.64 Aligned_cols=87 Identities=20% Similarity=0.299 Sum_probs=66.8
Q ss_pred CCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccC---------CCCC--HHHHHHHHHHHHhcCcEEEcCcccEEEE
Q 008860 245 PEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVL---------RGFD--EDIRDFVAEQMSLRGIEFHTEESPQAIL 313 (551)
Q Consensus 245 ~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l---------~~~~--~~~~~~l~~~l~~~Gv~i~~~~~v~~i~ 313 (551)
.++|+|||+|+.|+.+|..|++.|.+|+++++.+.+. +... .++...+.+.+++.||+++.++.+...
T Consensus 373 ~~~vvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~~- 451 (671)
T 1ps9_A 373 KKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSEIGGQFNIAKQIPGKEEFYETLRYYRRMIEVTGVTLKLNHTVTAD- 451 (671)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSCTTHHHHTTSTTCTTHHHHHHHHHHHHHHHTCEEEESCCCCSS-
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCCeeeccccCCCHHHHHHHHHHHHHHHHHcCCEEEeCcEecHH-
Confidence 4689999999999999999999999999999876541 2111 233455677788899999998765320
Q ss_pred EcCCceEEEEECCCeEE-EeeEEEEecCcCCCCCC
Q 008860 314 KSTDGSLSVKTNKGTVD-GFSHVMFATGRRPNTKN 347 (551)
Q Consensus 314 ~~~~~~~~V~~~~G~~i-~~d~vi~a~G~~p~~~~ 347 (551)
.+ .+|.||+|||.+|....
T Consensus 452 ---------------~~~~~d~lviAtG~~p~~~~ 471 (671)
T 1ps9_A 452 ---------------QLQAFDETILASGIVPRTPP 471 (671)
T ss_dssp ---------------SSCCSSEEEECCCEEECCCC
T ss_pred ---------------HhhcCCEEEEccCCCcCCCC
Confidence 13 78999999999887643
|
| >2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A | Back alignment and structure |
|---|
Probab=97.35 E-value=0.00016 Score=80.51 Aligned_cols=34 Identities=29% Similarity=0.469 Sum_probs=31.5
Q ss_pred CCCccEEEECCChHHHHHHHHHHhCCCcEEEEcc
Q 008860 70 HYDFDLFTIGAGSGGVRASRFAANFGASVAICEL 103 (551)
Q Consensus 70 ~~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~ 103 (551)
...+||+|||||++||++|+.|++.|++|+|+|+
T Consensus 276 ~~~~~v~viG~G~aGl~~A~~l~~~g~~v~v~E~ 309 (852)
T 2xag_A 276 KKTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEA 309 (852)
T ss_dssp SCCCEEEEECCSHHHHHHHHHHHHTTCEEEEECS
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHCCCcEEEEEe
Confidence 3468999999999999999999999999999993
|
| >3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ... | Back alignment and structure |
|---|
Probab=97.33 E-value=0.00021 Score=74.72 Aligned_cols=95 Identities=19% Similarity=0.226 Sum_probs=67.0
Q ss_pred CeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccC------------------------------------CCCC----
Q 008860 246 EKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVL------------------------------------RGFD---- 285 (551)
Q Consensus 246 ~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l------------------------------------~~~~---- 285 (551)
.+|+|||+|+.|+.+|..|++.|.+|+++++.. +. ..++
T Consensus 21 ~dVvIIGgG~aGl~aA~~la~~G~~V~liE~~~-~GG~~~~~gc~p~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 99 (478)
T 3dk9_A 21 YDYLVIGGGSGGLASARRAAELGARAAVVESHK-LGGTCVNVGCVPKKVMWNTAVHSEFMHDHADYGFPSCEGKFNWRVI 99 (478)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCEEEEESSC-TTHHHHHHSHHHHHHHHHHHHHHHHHTTTTTTTSCCCCCCCCHHHH
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCeEEEEecCC-CCCcccccCccchHHHHHHHHHHHHHHHHHhcCccCCCCccCHHHH
Confidence 479999999999999999999999999999763 10 0011
Q ss_pred --------HHHHHHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCcCCCCC
Q 008860 286 --------EDIRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNTK 346 (551)
Q Consensus 286 --------~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~~~ 346 (551)
..+...+...+++.|++++.+. +..+. ... ..|. .+++++.+|.||+|||..|...
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~-~~~~~--~~~-~~v~-~~g~~~~~d~lviAtG~~p~~p 163 (478)
T 3dk9_A 100 KEKRDAYVSRLNAIYQNNLTKSHIEIIRGH-AAFTS--DPK-PTIE-VSGKKYTAPHILIATGGMPSTP 163 (478)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCEEEESC-EEECS--CSS-CEEE-ETTEEEECSCEEECCCEEECCC
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCcEEEEeE-EEEee--CCe-EEEE-ECCEEEEeeEEEEccCCCCCCC
Confidence 1122334556677899998873 33332 222 3455 4667899999999999988754
|
| >2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A* | Back alignment and structure |
|---|
Probab=97.30 E-value=0.00064 Score=71.39 Aligned_cols=94 Identities=19% Similarity=0.292 Sum_probs=64.6
Q ss_pred ccEEEECCChHHHHHHHHHHhC---CCcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhhccCCCc
Q 008860 73 FDLFTIGAGSGGVRASRFAANF---GASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDESNGFGW 149 (551)
Q Consensus 73 ~dVvIIGgG~aGl~aA~~l~~~---G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~ 149 (551)
.+++|||||..|+..|..|++. |.+|+||+. ...+ +|
T Consensus 192 ~~vvViGgG~ig~E~A~~l~~~~~~g~~Vtlv~~---------~~~~---------l~---------------------- 231 (495)
T 2wpf_A 192 RRVLTVGGGFISVEFAGIFNAYKPPGGKVTLCYR---------NNLI---------LR---------------------- 231 (495)
T ss_dssp SEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEES---------SSSS---------CT----------------------
T ss_pred CeEEEECCCHHHHHHHHHHHhhCCCCCeEEEEEc---------CCcc---------cc----------------------
Confidence 5799999999999999999998 999999992 1110 00
Q ss_pred ccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEe-EEEEecC---C--EEEE-cCEEEEeCeEEEcCCCCCC
Q 008860 150 KYGTEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIEG-RGKIVDP---H--TVDV-DGKLYSARHILISVGGRPF 222 (551)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~i~~---~--~v~v-~g~~~~~d~lviAtG~~p~ 222 (551)
.++. . +...+.+.+++.||+++.+ .+..++. . .+.+ +++.+.+|.||+|+|.+|+
T Consensus 232 ------~~d~-~-----------~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~~v~~~~G~~i~~D~vv~a~G~~p~ 293 (495)
T 2wpf_A 232 ------GFDE-T-----------IREEVTKQLTANGIEIMTNENPAKVSLNTDGSKHVTFESGKTLDVDVVMMAIGRIPR 293 (495)
T ss_dssp ------TSCH-H-----------HHHHHHHHHHHTTCEEEESCCEEEEEECTTSCEEEEETTSCEEEESEEEECSCEEEC
T ss_pred ------ccCH-H-----------HHHHHHHHHHhCCCEEEeCCEEEEEEEcCCceEEEEECCCcEEEcCEEEECCCCccc
Confidence 0111 1 1122334566779999887 3444431 2 3444 6778999999999998887
Q ss_pred CC
Q 008860 223 IP 224 (551)
Q Consensus 223 ~p 224 (551)
..
T Consensus 294 ~~ 295 (495)
T 2wpf_A 294 TN 295 (495)
T ss_dssp CG
T ss_pred cc
Confidence 53
|
| >4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=97.28 E-value=0.001 Score=70.47 Aligned_cols=93 Identities=18% Similarity=0.165 Sum_probs=64.4
Q ss_pred ccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhhccCCCcccC
Q 008860 73 FDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDESNGFGWKYG 152 (551)
Q Consensus 73 ~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~~~ 152 (551)
.+++|||||+.|+-.|..+++.|.+|+|++ +..+ +|
T Consensus 224 ~~lvIIGgG~IGlE~A~~~~~lG~~VTii~----------~~~~---------L~------------------------- 259 (542)
T 4b1b_A 224 GKTLVVGASYVALECSGFLNSLGYDVTVAV----------RSIV---------LR------------------------- 259 (542)
T ss_dssp CSEEEECCSHHHHHHHHHHHHHTCCEEEEE----------SSCS---------ST-------------------------
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCeEEEec----------cccc---------cc-------------------------
Confidence 579999999999999999999999999998 2110 01
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEeE-EEEe--cCCEEEE---cCEEEEeCeEEEcCCCCCCCC
Q 008860 153 TEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIEGR-GKIV--DPHTVDV---DGKLYSARHILISVGGRPFIP 224 (551)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~i--~~~~v~v---~g~~~~~d~lviAtG~~p~~p 224 (551)
..|.+ +...+...+++.|+++..+. +..+ ....+.+ ++..+.+|.|++|+|-+|+..
T Consensus 260 ---~~D~e------------i~~~l~~~l~~~gi~~~~~~~v~~~~~~~~~~~v~~~~~~~~~~D~vLvAvGR~Pnt~ 322 (542)
T 4b1b_A 260 ---GFDQQ------------CAVKVKLYMEEQGVMFKNGILPKKLTKMDDKILVEFSDKTSELYDTVLYAIGRKGDID 322 (542)
T ss_dssp ---TSCHH------------HHHHHHHHHHHTTCEEEETCCEEEEEEETTEEEEEETTSCEEEESEEEECSCEEESCG
T ss_pred ---ccchh------------HHHHHHHHHHhhcceeecceEEEEEEecCCeEEEEEcCCCeEEEEEEEEcccccCCcc
Confidence 11111 11223345677899998873 2222 2334433 667888999999999988764
|
| >3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A* | Back alignment and structure |
|---|
Probab=97.27 E-value=0.0016 Score=68.06 Aligned_cols=98 Identities=16% Similarity=0.136 Sum_probs=66.5
Q ss_pred CeEEEEcCcHHHHHHHHHHHhCCCeEEEEeec---C----c---------------------------------c-CC--
Q 008860 246 EKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQ---K----K---------------------------------V-LR-- 282 (551)
Q Consensus 246 ~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~---~----~---------------------------------~-l~-- 282 (551)
-.|+|||+|+.|+.+|..+++.|.+|+++++. + . + +.
T Consensus 10 ~DvvVIGgG~aGl~aA~~la~~G~~V~liEk~~~~~~~~~~~~~GG~c~~~gciPsk~l~~~~~~~~~~~~~~~~g~~~~ 89 (483)
T 3dgh_A 10 YDLIVIGGGSAGLACAKEAVLNGARVACLDFVKPTPTLGTKWGVGGTCVNVGCIPKKLMHQASLLGEAVHEAAAYGWNVD 89 (483)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEECCCCCCTTTTCCCCSSCHHHHHSHHHHHHHHHHHHHHHHHHHHHHTTBCCC
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCEEEEEEeccccccccccCCcCCeecccCchhhHHHHHHHHHHHHHHHHHhcCcccC
Confidence 47999999999999999999999999999831 0 0 0 00
Q ss_pred ---CCCH-HHH-----------HHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEECCCe-EEEeeEEEEecCcCCCCC
Q 008860 283 ---GFDE-DIR-----------DFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTNKGT-VDGFSHVMFATGRRPNTK 346 (551)
Q Consensus 283 ---~~~~-~~~-----------~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~G~-~i~~d~vi~a~G~~p~~~ 346 (551)
.++- .+. ..+...++..||+++.+. ..-+ +.+ .+.|.+.+|+ ++.+|.+|+|||.+|...
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~-a~~~--~~~-~v~v~~~~g~~~~~~d~lviATGs~p~~p 165 (483)
T 3dgh_A 90 DKIKPDWHKLVQSVQNHIKSVNWVTRVDLRDKKVEYINGL-GSFV--DSH-TLLAKLKSGERTITAQTFVIAVGGRPRYP 165 (483)
T ss_dssp CCCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECSE-EEEE--ETT-EEEEECTTCCEEEEEEEEEECCCEEECCC
T ss_pred CcCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeE-EEEc--cCC-EEEEEeCCCeEEEEcCEEEEeCCCCcCCC
Confidence 0111 111 112244667899988773 2222 222 3677777774 799999999999988764
Q ss_pred C
Q 008860 347 N 347 (551)
Q Consensus 347 ~ 347 (551)
.
T Consensus 166 ~ 166 (483)
T 3dgh_A 166 D 166 (483)
T ss_dssp S
T ss_pred C
Confidence 3
|
| >3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex} | Back alignment and structure |
|---|
Probab=97.26 E-value=0.00013 Score=79.99 Aligned_cols=87 Identities=20% Similarity=0.206 Sum_probs=67.3
Q ss_pred CCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccC---------CC--CCHHHHHHHHHHHHhc-CcEEEcCcccEEE
Q 008860 245 PEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVL---------RG--FDEDIRDFVAEQMSLR-GIEFHTEESPQAI 312 (551)
Q Consensus 245 ~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l---------~~--~~~~~~~~l~~~l~~~-Gv~i~~~~~v~~i 312 (551)
.++|+|||+|+.|+.+|..|++.|.+|+++++.+.+. +. ...++...+.+.+++. ||+++.++.++
T Consensus 391 ~~~VvIIGgG~AGl~aA~~La~~G~~V~liE~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~-- 468 (690)
T 3k30_A 391 DARVLVVGAGPSGLEAARALGVRGYDVVLAEAGRDLGGRVTQESALPGLSAWGRVKEYREAVLAELPNVEIYRESPMT-- 468 (690)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSCTHHHHHHTSTTCGGGGHHHHHHHHHHHTCTTEEEESSCCCC--
T ss_pred cceEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCEeeeccCCCchhHHHHHHHHHHHHHHHcCCCEEEECCeec--
Confidence 4689999999999999999999999999999976431 22 1234566677778887 99999886542
Q ss_pred EEcCCceEEEEECCCeEEEeeEEEEecCcCCC
Q 008860 313 LKSTDGSLSVKTNKGTVDGFSHVMFATGRRPN 344 (551)
Q Consensus 313 ~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~ 344 (551)
..+++++.+|.||+|+|..|.
T Consensus 469 -----------~~~~~~~~~d~lvlAtG~~~~ 489 (690)
T 3k30_A 469 -----------GDDIVEFGFEHVITATGATWR 489 (690)
T ss_dssp -----------HHHHHHTTCCEEEECCCEEEC
T ss_pred -----------HHHHhhcCCCEEEEcCCCccc
Confidence 123345789999999999865
|
| >3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A* | Back alignment and structure |
|---|
Probab=97.23 E-value=0.0012 Score=69.15 Aligned_cols=97 Identities=19% Similarity=0.175 Sum_probs=66.3
Q ss_pred CeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecC--------ccC------------------------------------
Q 008860 246 EKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQK--------KVL------------------------------------ 281 (551)
Q Consensus 246 ~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~--------~~l------------------------------------ 281 (551)
-.|+|||+|+.|+.+|..+++.|.+|+++++.+ .+-
T Consensus 7 ~DvvVIG~G~aGl~aA~~la~~G~~V~liEk~~~~~~~~~~~~GGtc~~~gciPsk~l~~~~~~~~~~~~~~~~g~~~~~ 86 (488)
T 3dgz_A 7 FDLLVIGGGSGGLACAKEAAQLGKKVAVADYVEPSPRGTKWGLGGTCVNVGCIPKKLMHQAALLGGMIRDAHHYGWEVAQ 86 (488)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEECCCCCCTTSCCCCTTCHHHHHSHHHHHHHHHHHHHHHHHHHHHHTTCCCCS
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCeEEEEEecccccccccCCcCCeecccCCcccHHHHHHHHHHHHHHHHHhcCcccCC
Confidence 379999999999999999999999999998621 000
Q ss_pred -CCCCH-HH-----------HHHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEECCC--eEEEeeEEEEecCcCCCCC
Q 008860 282 -RGFDE-DI-----------RDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTNKG--TVDGFSHVMFATGRRPNTK 346 (551)
Q Consensus 282 -~~~~~-~~-----------~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~G--~~i~~d~vi~a~G~~p~~~ 346 (551)
...+- .+ ...+...+++.||+++.+. +..+ +...+.|.+.+| .++.+|.||+|||.+|...
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~g~-~~~~---~~~~v~v~~~~g~~~~~~~d~lViATGs~p~~p 162 (488)
T 3dgz_A 87 PVQHNWKTMAEAVQNHVKSLNWGHRVQLQDRKVKYFNIK-ASFV---DEHTVRGVDKGGKATLLSAEHIVIATGGRPRYP 162 (488)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECCE-EEES---SSSEEEEECTTSCEEEEEEEEEEECCCEEECCC
T ss_pred cCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEE-EEEc---cCCeEEEEeCCCceEEEECCEEEEcCCCCCCCC
Confidence 01110 11 1113345667899987663 3322 223366777777 4799999999999988754
|
| >2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A* | Back alignment and structure |
|---|
Probab=97.15 E-value=0.0021 Score=69.17 Aligned_cols=99 Identities=14% Similarity=0.192 Sum_probs=65.9
Q ss_pred CCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeec-Ccc------CC--------------------------------CCC
Q 008860 245 PEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQ-KKV------LR--------------------------------GFD 285 (551)
Q Consensus 245 ~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~-~~~------l~--------------------------------~~~ 285 (551)
..+|+|||+|+.|+.+|..+++.|.+|+++++. +.. +. .++
T Consensus 107 ~~dvvVIG~GpAGl~aA~~l~~~g~~v~liE~~~~~~~g~~~~~GG~~~~~g~iP~~~l~~~~~~~~~~~~~~~~g~~~~ 186 (598)
T 2x8g_A 107 DYDLIVIGGGSGGLAAGKEAAKYGAKTAVLDYVEPTPIGTTWGLGGTCVNVGCIPKKLMHQAGLLSHALEDAEHFGWSLD 186 (598)
T ss_dssp SEEEEEECCSHHHHHHHHHHHHTTCCEEEECCCCCCTTCCCCCTTHHHHHHSHHHHHHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred cccEEEECCCccHHHHHHHHHhCCCeEEEEeccCCcccccccccCceEeccCCCchHHHHHHHHHHHHHhhHHhCCcccc
Confidence 458999999999999999999999999999962 210 00 000
Q ss_pred --------HHHHHHH-----------HHHHHhcCcEEEcCcccEEEEEcCCceEEEEECCC--eEEEeeEEEEecCcCCC
Q 008860 286 --------EDIRDFV-----------AEQMSLRGIEFHTEESPQAILKSTDGSLSVKTNKG--TVDGFSHVMFATGRRPN 344 (551)
Q Consensus 286 --------~~~~~~l-----------~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~G--~~i~~d~vi~a~G~~p~ 344 (551)
+++.+.+ ...+++.||+++.+ ....+. .. .+.+...+| +++.+|.||+|||.+|.
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~-~~~~~~--~~-~v~v~~~~g~~~~~~~d~lviAtGs~p~ 262 (598)
T 2x8g_A 187 RSKISHNWSTMVEGVQSHIGSLNWGYKVALRDNQVTYLNA-KGRLIS--PH-EVQITDKNQKVSTITGNKIILATGERPK 262 (598)
T ss_dssp GGGCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECS-EEEEEE--TT-EEEEECTTCCEEEEEEEEEEECCCEEEC
T ss_pred CCcCccCHHHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEE-EEEEcC--CC-EEEEEeCCCCeEEEEeCEEEEeCCCCCC
Confidence 1111111 22355678888866 233332 22 255666677 46899999999999887
Q ss_pred CCC
Q 008860 345 TKN 347 (551)
Q Consensus 345 ~~~ 347 (551)
...
T Consensus 263 ~p~ 265 (598)
T 2x8g_A 263 YPE 265 (598)
T ss_dssp CCS
T ss_pred CCC
Confidence 643
|
| >1kf6_A Fumarate reductase flavoprotein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1kfy_A* 1l0v_A* 2b76_A* 3cir_A* 3p4p_A* 3p4q_A* 3p4r_A* 3p4s_A* | Back alignment and structure |
|---|
Probab=97.13 E-value=0.0017 Score=69.75 Aligned_cols=97 Identities=18% Similarity=0.090 Sum_probs=71.2
Q ss_pred eEEEEcCcHHHHHHHHHHHhCC--CeEEEEeecCccCC-----------C------------------------------
Q 008860 247 KIAIVGGGYIALEFAGIFSGLT--SEVHVFIRQKKVLR-----------G------------------------------ 283 (551)
Q Consensus 247 ~vvViG~G~~g~e~a~~l~~~g--~~Vtlv~~~~~~l~-----------~------------------------------ 283 (551)
.|+|||+|..|+-+|..|++.| .+|.++++.+.... .
T Consensus 7 DVvIVG~G~AGl~aAl~la~~G~~~~V~vlEk~~~~~~~s~~a~GGi~~~~~~~ds~~~~~~d~~~~g~~~~d~~~v~~~ 86 (602)
T 1kf6_A 7 DLAIVGAGGAGLRAAIAAAQANPNAKIALISKVYPMRSHTVAAEGGSAAVAQDHDSFEYHFHDTVAGGDWLCEQDVVDYF 86 (602)
T ss_dssp SEEEECCSHHHHHHHHHHHHHCTTCCEEEEESSCGGGSGGGGCCSCEECCCSTTCCHHHHHHHHHHHTTTCSCHHHHHHH
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCcEEEEeCCCCCCChHHHhcCccEEeCCCCCCHHHHHHHHHHhcCCCCCHHHHHHH
Confidence 6999999999999999999999 99999997532100 0
Q ss_pred -----------------C----------------------------CHHHHHHHHHHHHhcC-cEEEcCcccEEEEEcCC
Q 008860 284 -----------------F----------------------------DEDIRDFVAEQMSLRG-IEFHTEESPQAILKSTD 317 (551)
Q Consensus 284 -----------------~----------------------------~~~~~~~l~~~l~~~G-v~i~~~~~v~~i~~~~~ 317 (551)
| ...+...+.+.+++.| |+++.++.|+++..+++
T Consensus 87 ~~~~~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~d~tg~~l~~~L~~~~~~~gnv~i~~~~~v~~l~~~~g 166 (602)
T 1kf6_A 87 VHHCPTEMTQLELWGCPWSRRPDGSVNVRRFGGMKIERTWFAADKTGFHMLHTLFQTSLQFPQIQRFDEHFVLDILVDDG 166 (602)
T ss_dssp HHHHHHHHHHHHHTTCCCCBCTTSSBCCBCCTTCSSCCEECSTTCHHHHHHHHHHHHHTTCTTEEEEETEEEEEEEEETT
T ss_pred HHHHHHHHHHHHHcCCCcccCCCCcccccccCCccCCeEEEcCCCCHHHHHHHHHHHHHhCCCcEEEeCCEEEEEEEeCC
Confidence 0 0123344455566678 99999999999987765
Q ss_pred ceEEEE---ECCCe--EEEeeEEEEecCcCC
Q 008860 318 GSLSVK---TNKGT--VDGFSHVMFATGRRP 343 (551)
Q Consensus 318 ~~~~V~---~~~G~--~i~~d~vi~a~G~~p 343 (551)
.+..|. +.+|+ .+.++.||+|+|...
T Consensus 167 ~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~s 197 (602)
T 1kf6_A 167 HVRGLVAMNMMEGTLVQIRANAVVMATGGAG 197 (602)
T ss_dssp EEEEEEEEETTTTEEEEEECSCEEECCCCCG
T ss_pred EEEEEEEEEcCCCcEEEEEcCeEEECCCCCc
Confidence 433443 25776 689999999999743
|
| >1kdg_A CDH, cellobiose dehydrogenase; GMC oxidoreductase, PHBH fold, alpha/beta structure, rossman 6-hydroxylated FAD, oxidoreductase; HET: NAG MAN 6FA EMT; 1.50A {Phanerochaete chrysosporium} SCOP: c.3.1.2 d.16.1.1 PDB: 1naa_A* | Back alignment and structure |
|---|
Probab=97.10 E-value=0.0003 Score=74.90 Aligned_cols=57 Identities=16% Similarity=0.278 Sum_probs=41.5
Q ss_pred HHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEECC---Ce--EE---EeeEEEEecCcCCCCCC
Q 008860 291 FVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTNK---GT--VD---GFSHVMFATGRRPNTKN 347 (551)
Q Consensus 291 ~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~---G~--~i---~~d~vi~a~G~~p~~~~ 347 (551)
.+....++.|+++++++.|++|..+++....|++.+ |+ ++ .++.||+|+|......+
T Consensus 201 ~l~~~~~~~~~~i~~~~~V~~i~~~~~~~~gV~~~~~~~g~~~~~~v~~~~~VIlaaG~~~sp~l 265 (546)
T 1kdg_A 201 YLQTALARPNFTFKTNVMVSNVVRNGSQILGVQTNDPTLGPNGFIPVTPKGRVILSAGAFGTSRI 265 (546)
T ss_dssp HHHHHHTCTTEEEECSCCEEEEEEETTEEEEEEESCTTSSGGGEEEEEEEEEEEECSHHHHHHHH
T ss_pred HHHHHhhCCCcEEEeCCEEEEEEEeCCEEEEEEEEecCCCceeEEEEEeCCEEEEcCChhcCHHH
Confidence 344444446999999999999988765556677754 64 34 78999999998655444
|
| >1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A* | Back alignment and structure |
|---|
Probab=97.08 E-value=0.00018 Score=79.31 Aligned_cols=87 Identities=23% Similarity=0.236 Sum_probs=59.0
Q ss_pred CCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCC---------CCC--HHHHHHHHHHHHhc------CcEEEcCc
Q 008860 245 PEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLR---------GFD--EDIRDFVAEQMSLR------GIEFHTEE 307 (551)
Q Consensus 245 ~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~---------~~~--~~~~~~l~~~l~~~------Gv~i~~~~ 307 (551)
.++|+|||+|+.|+.+|..|++.|.+|+++++.+.+.. ... ..+.+.+.+.++.. ++++..++
T Consensus 389 ~~~VvIIGgGpAGl~aA~~L~~~G~~Vtlie~~~~~GG~~~~~~~~pg~~~~~~~~~~~~~~i~~~~~~~~~~v~i~~~~ 468 (729)
T 1o94_A 389 KDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEKIGGHLNQVAALPGLGEWSYHRDYRETQITKLLKKNKESQLALGQK 468 (729)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTTHHHHTTSTTCGGGHHHHHHHHHHHHHHHHHSTTCEEECSCC
T ss_pred CceEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCcCCeeeecccCCChHHHHHHHHHHHHHHHHhhcccCCceEEEeCe
Confidence 46899999999999999999999999999999775421 111 12223333333332 45554432
Q ss_pred ccEEEEEcCCceEEEEECCCeEEEeeEEEEecCcCCC
Q 008860 308 SPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPN 344 (551)
Q Consensus 308 ~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~ 344 (551)
. +.+.++..+.+|.||+|||..|.
T Consensus 469 ~-------------v~~~~~~~~~~d~vviAtG~~~~ 492 (729)
T 1o94_A 469 P-------------MTADDVLQYGADKVIIATGARWN 492 (729)
T ss_dssp C-------------CCHHHHHTSCCSEEEECCCEEEC
T ss_pred E-------------EehhhccccCCCEEEEcCCCCcc
Confidence 1 23334445889999999999864
|
| >3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea} | Back alignment and structure |
|---|
Probab=97.04 E-value=0.0018 Score=67.93 Aligned_cols=30 Identities=17% Similarity=0.274 Sum_probs=29.1
Q ss_pred ccEEEECCChHHHHHHHHHHhCCCcEEEEc
Q 008860 73 FDLFTIGAGSGGVRASRFAANFGASVAICE 102 (551)
Q Consensus 73 ~dVvIIGgG~aGl~aA~~l~~~G~~V~liE 102 (551)
.+|+|||||+.|+.+|..|++.|.+|++++
T Consensus 175 k~vvViGgG~ig~E~A~~l~~~g~~Vtlv~ 204 (492)
T 3ic9_A 175 KSVAVFGPGVIGLELGQALSRLGVIVKVFG 204 (492)
T ss_dssp SEEEEESSCHHHHHHHHHHHHTTCEEEEEC
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEE
Confidence 579999999999999999999999999999
|
| >3t37_A Probable dehydrogenase; BET alpha beta fold, ADP binding, oxidoreductase; HET: FAD; 2.19A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=97.00 E-value=0.00035 Score=74.03 Aligned_cols=51 Identities=8% Similarity=0.086 Sum_probs=37.4
Q ss_pred HhcCcEEEcCcccEEEEEcCCceEEEEE--CCCe-EEEeeEEEEecCcCCCCCC
Q 008860 297 SLRGIEFHTEESPQAILKSTDGSLSVKT--NKGT-VDGFSHVMFATGRRPNTKN 347 (551)
Q Consensus 297 ~~~Gv~i~~~~~v~~i~~~~~~~~~V~~--~~G~-~i~~d~vi~a~G~~p~~~~ 347 (551)
.+.++.+..++.|.++..+++....|.. .++. .+.++.||+|.|..-...+
T Consensus 222 ~r~nl~v~~~~~v~~i~~~~~~a~gv~~~~~~~~~~~~a~~VILsAGai~SP~L 275 (526)
T 3t37_A 222 GRKNLTILTGSRVRRLKLEGNQVRSLEVVGRQGSAEVFADQIVLCAGALESPAL 275 (526)
T ss_dssp TCTTEEEECSCEEEEEEEETTEEEEEEEEETTEEEEEEEEEEEECSHHHHHHHH
T ss_pred CCCCeEEEeCCEEEEEEecCCeEEEEEEEecCceEEEeecceEEcccccCCcch
Confidence 4568999999999999887776455544 3332 5778999999997554444
|
| >1ju2_A HydroxynitrIle lyase; flavin, GMC oxidoreductase, almond, cyanogenesis; HET: NAG NDG FUC BMA MAN FAD; 1.47A {Prunus dulcis} SCOP: c.3.1.2 d.16.1.1 PDB: 3gdp_A* 3gdn_A* | Back alignment and structure |
|---|
Probab=96.96 E-value=0.00031 Score=74.57 Aligned_cols=32 Identities=19% Similarity=0.315 Sum_probs=30.2
Q ss_pred CCccEEEECCChHHHHHHHHHHhCCCcEEEEcc
Q 008860 71 YDFDLFTIGAGSGGVRASRFAANFGASVAICEL 103 (551)
Q Consensus 71 ~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~ 103 (551)
.+||+||||||+||+.+|.+|++ |.+|+|+|+
T Consensus 25 ~~yD~IIVGsG~AG~v~A~rLse-g~~VlvLEa 56 (536)
T 1ju2_A 25 GSYDYVIVGGGTSGCPLAATLSE-KYKVLVLER 56 (536)
T ss_dssp EEEEEEEECCSTTHHHHHHHHTT-TSCEEEECS
T ss_pred CcccEEEECccHHHHHHHHHHhc-CCcEEEEec
Confidence 46999999999999999999999 999999993
|
| >3q9t_A Choline dehydrogenase and related flavoproteins; glucose-methanol-choline oxidoreductase family, formate OXID formyl-FAD, oxidoreductase; HET: FAY; 2.24A {Aspergillus oryzae} | Back alignment and structure |
|---|
Probab=96.93 E-value=0.00049 Score=73.40 Aligned_cols=33 Identities=27% Similarity=0.398 Sum_probs=30.6
Q ss_pred CCccEEEECCChHHHHHHHHHHhCC-CcEEEEcc
Q 008860 71 YDFDLFTIGAGSGGVRASRFAANFG-ASVAICEL 103 (551)
Q Consensus 71 ~~~dVvIIGgG~aGl~aA~~l~~~G-~~V~liE~ 103 (551)
..||+||||||.||+.+|.+|++.+ .+|+|||+
T Consensus 5 ~~yDyIVVGgG~AG~v~A~rLse~~~~~VLllEa 38 (577)
T 3q9t_A 5 SHFDFVIVGGGTAGNTVAGRLAENPNVTVLIVEA 38 (577)
T ss_dssp CEEEEEEESCSHHHHHHHHHHTTSTTSCEEEECS
T ss_pred CcccEEEECCcHHHHHHHHHHHhCCCCcEEEEec
Confidence 4699999999999999999999987 79999994
|
| >3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.30A {Chromobacterium violaceum atcc 12472} | Back alignment and structure |
|---|
Probab=96.91 E-value=0.00044 Score=70.00 Aligned_cols=86 Identities=15% Similarity=0.223 Sum_probs=66.8
Q ss_pred eEEEEcCcHHHHHHHHHHHhC--CCeEEEEeecCcc----------------------C-CC------------------
Q 008860 247 KIAIVGGGYIALEFAGIFSGL--TSEVHVFIRQKKV----------------------L-RG------------------ 283 (551)
Q Consensus 247 ~vvViG~G~~g~e~a~~l~~~--g~~Vtlv~~~~~~----------------------l-~~------------------ 283 (551)
+|+|||+|+.|+.+|..|++. |.+|+++++.+.+ . ..
T Consensus 2 dV~IVGaG~aGl~~A~~L~~~~~G~~V~v~E~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 81 (381)
T 3c4a_A 2 KILVIGAGPAGLVFASQLKQARPLWAIDIVEKNDEQEVLGWGVVLPGRPGQHPANPLSYLDAPERLNPQFLEDFKLVHHN 81 (381)
T ss_dssp EEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSCTTCCCCSEEEEESCTTTCTTCGGGGSSCGGGGCCEEECCEEEEESS
T ss_pred eEEEECCCHHHHHHHHHHHhcCCCCCEEEEECCCCCCcceeEEEeCcHHHHhhcCcchhhhhhHHHhhccccceEEEeCC
Confidence 699999999999999999998 9999999987543 0 00
Q ss_pred --------------CCHHHHHHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCcCCC
Q 008860 284 --------------FDEDIRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPN 344 (551)
Q Consensus 284 --------------~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~ 344 (551)
...++.+.+.+.+++.|++++++++|++++.. +++.+|.||.|.|..+.
T Consensus 82 ~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~gv~i~~~~~v~~i~~~------------~~~~ad~vV~AdG~~S~ 144 (381)
T 3c4a_A 82 EPSLMSTGVLLCGVERRGLVHALRDKCRSQGIAIRFESPLLEHGEL------------PLADYDLVVLANGVNHK 144 (381)
T ss_dssp SEEECCCCSCEEEEEHHHHHHHHHHHHHHTTCEEETTCCCCSGGGC------------CGGGCSEEEECCGGGGG
T ss_pred eeEEecCCCceeeecHHHHHHHHHHHHHHCCCEEEeCCEeccchhc------------ccccCCEEEECCCCCch
Confidence 01235566777778889999999998887421 12578999999998775
|
| >4gde_A UDP-galactopyranose mutase; flavin adenine dinucleotide binding, nucleotide binding, MUT isomerase; HET: FDA; 2.20A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 4gdc_A* 4gdd_A* 3utf_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A* | Back alignment and structure |
|---|
Probab=96.90 E-value=0.0024 Score=67.18 Aligned_cols=34 Identities=12% Similarity=0.118 Sum_probs=30.4
Q ss_pred eEEEEcCcHHHHHHHHHHHh-CCCeEEEEeecCcc
Q 008860 247 KIAIVGGGYIALEFAGIFSG-LTSEVHVFIRQKKV 280 (551)
Q Consensus 247 ~vvViG~G~~g~e~a~~l~~-~g~~Vtlv~~~~~~ 280 (551)
.|+|||+|..|+-+|..|++ .|.+|+++++.+++
T Consensus 12 DVvIIGaGisGLsaA~~L~k~~G~~V~VlE~~~~~ 46 (513)
T 4gde_A 12 DVLVIGAGPTGLGAAKRLNQIDGPSWMIVDSNETP 46 (513)
T ss_dssp EEEEECCSHHHHHHHHHHHHHCCSCEEEEESSSSC
T ss_pred CEEEECCcHHHHHHHHHHHhhCCCCEEEEECCCCC
Confidence 69999999999999999987 59999999987654
|
| >1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND FAD; 1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2 d.16.1.1 PDB: 3cox_A* | Back alignment and structure |
|---|
Probab=96.75 E-value=0.00098 Score=70.20 Aligned_cols=36 Identities=25% Similarity=0.339 Sum_probs=32.9
Q ss_pred CCCCCccEEEECCChHHHHHHHHHHhCCCcEEEEcc
Q 008860 68 PSHYDFDLFTIGAGSGGVRASRFAANFGASVAICEL 103 (551)
Q Consensus 68 ~~~~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~ 103 (551)
++..+||++|||+|++|+.+|.+|++.|.+|+|||+
T Consensus 7 ~~~~~~d~~iiG~G~~g~~~a~~l~~~~~~v~~~e~ 42 (507)
T 1coy_A 7 ADGDRVPALVIGSGYGGAVAALRLTQAGIPTQIVEM 42 (507)
T ss_dssp CTTCEEEEEEECCSHHHHHHHHHHHHTTCCEEEECS
T ss_pred CcCCcCCEEEECCCHHHHHHHHHHHHCCCcEEEEEC
Confidence 445579999999999999999999999999999994
|
| >1vg0_A RAB proteins geranylgeranyltransferase component A 1; RAB prenylation, post-translational modification, protein binding/protein transport complex; HET: GER GDP PG4; 2.20A {Rattus norvegicus} SCOP: c.3.1.3 d.16.1.6 PDB: 1vg9_A* 1ltx_R* | Back alignment and structure |
|---|
Probab=96.71 E-value=0.0015 Score=69.82 Aligned_cols=60 Identities=10% Similarity=0.062 Sum_probs=50.3
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCcccEEEEEcC--CceEEEEECCCeEEEeeEEEEecCcCCC
Q 008860 285 DEDIRDFVAEQMSLRGIEFHTEESPQAILKST--DGSLSVKTNKGTVDGFSHVMFATGRRPN 344 (551)
Q Consensus 285 ~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~--~~~~~V~~~~G~~i~~d~vi~a~G~~p~ 344 (551)
...+.+.+.+.++..|.++++++.|.+|..++ +++..|.+.+|+++.||.||......|.
T Consensus 377 ~g~L~qaL~r~~~~~Gg~i~l~~~V~~I~~~~~~g~v~gV~~~~Ge~i~A~~VVs~~~~lp~ 438 (650)
T 1vg0_A 377 QGELPQCFCRMCAVFGGIYCLRHSVQCLVVDKESRKCKAVIDQFGQRIISKHFIIEDSYLSE 438 (650)
T ss_dssp TTHHHHHHHHHHHHTTCEEESSCCEEEEEEETTTCCEEEEEETTSCEEECSEEEEEGGGBCT
T ss_pred hhHHHHHHHHHHHHcCCEEEeCCEeeEEEEeCCCCeEEEEEeCCCCEEEcCEEEEChhhcCH
Confidence 45788999999999999999999999998776 4555677788999999999997776654
|
| >3qvp_A Glucose oxidase; oxidoreductase; HET: NAG BMA MAN FAD; 1.20A {Aspergillus niger} PDB: 1gal_A* 1cf3_A* 3qvr_A* | Back alignment and structure |
|---|
Probab=96.68 E-value=0.00088 Score=71.43 Aligned_cols=32 Identities=22% Similarity=0.262 Sum_probs=30.1
Q ss_pred CccEEEECCChHHHHHHHHHHh-CCCcEEEEcc
Q 008860 72 DFDLFTIGAGSGGVRASRFAAN-FGASVAICEL 103 (551)
Q Consensus 72 ~~dVvIIGgG~aGl~aA~~l~~-~G~~V~liE~ 103 (551)
.||+||||||.||+.+|.+|++ .+.+|+|||+
T Consensus 19 ~yDyIIVGgG~AG~vlA~RLse~~~~~VLlLEa 51 (583)
T 3qvp_A 19 TVDYIIAGGGLTGLTTAARLTENPNISVLVIES 51 (583)
T ss_dssp EEEEEEECCSHHHHHHHHHHTTSTTCCEEEECS
T ss_pred CccEEEECCcHHHHHHHHHHHhCCCCcEEEEec
Confidence 6999999999999999999997 5899999995
|
| >1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis, FAD, oxidoreductase; 2.20A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A* | Back alignment and structure |
|---|
Probab=96.67 E-value=0.004 Score=65.99 Aligned_cols=33 Identities=21% Similarity=0.287 Sum_probs=29.5
Q ss_pred CeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCc
Q 008860 246 EKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKK 279 (551)
Q Consensus 246 ~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~ 279 (551)
-.|+|||+|..|+-+|..+++ |.+|.++++.+.
T Consensus 9 ~DVvVVG~G~AGl~aAl~la~-G~~V~vlEk~~~ 41 (540)
T 1chu_A 9 CDVLIIGSGAAGLSLALRLAD-QHQVIVLSKGPV 41 (540)
T ss_dssp CSEEEECCSHHHHHHHHHHTT-TSCEEEECSSCT
T ss_pred CCEEEECccHHHHHHHHHHhc-CCcEEEEECCCC
Confidence 369999999999999999999 999999998653
|
| >3ayj_A Pro-enzyme of L-phenylalanine oxidase; amino acid oxidase, flavoenzyme, L- binding, oxidoreductase; HET: FAD PHE; 1.10A {Pseudomonas} PDB: 2yr4_A* 2yr6_A* 3ayi_A* 2yr5_A* 3ayl_A* | Back alignment and structure |
|---|
Probab=96.67 E-value=0.00067 Score=73.59 Aligned_cols=32 Identities=25% Similarity=0.480 Sum_probs=29.9
Q ss_pred CccEEEECCChHHHHHHHHHHhCC--------CcEEEEcc
Q 008860 72 DFDLFTIGAGSGGVRASRFAANFG--------ASVAICEL 103 (551)
Q Consensus 72 ~~dVvIIGgG~aGl~aA~~l~~~G--------~~V~liE~ 103 (551)
.++|+|||||++||+||+.|++.| ++|+|+|+
T Consensus 56 ~~~v~IiGaGiaGL~aA~~L~~~g~~~~~~~~~~V~v~E~ 95 (721)
T 3ayj_A 56 NYRIAIVGGGAGGIAALYELGRLAATLPAGSGIDVQIYEA 95 (721)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHHHTTSCTTCEEEEEEECC
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCcccccCCCceEEEEec
Confidence 478999999999999999999988 99999994
|
| >1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism, oxidoreductase, atomic RESO; HET: FAD; 0.92A {Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A* 1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A* 1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A* | Back alignment and structure |
|---|
Probab=96.54 E-value=0.0014 Score=68.96 Aligned_cols=32 Identities=19% Similarity=0.256 Sum_probs=30.7
Q ss_pred CccEEEECCChHHHHHHHHHHhCCCcEEEEcc
Q 008860 72 DFDLFTIGAGSGGVRASRFAANFGASVAICEL 103 (551)
Q Consensus 72 ~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~ 103 (551)
+||++|||+|++|+.+|.+|++.|.+|+|||+
T Consensus 5 ~~d~~iiG~G~~g~~~a~~l~~~~~~v~~~e~ 36 (504)
T 1n4w_A 5 YVPAVVIGTGYGAAVSALRLGEAGVQTLMLEM 36 (504)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEEES
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCcEEEEeC
Confidence 58999999999999999999999999999994
|
| >3fim_B ARYL-alcohol oxidase; AAO, lignin degradation, oxidoreductase, flavoprotein; HET: FAD; 2.55A {Pleurotus eryngii} | Back alignment and structure |
|---|
Probab=96.51 E-value=0.001 Score=70.84 Aligned_cols=32 Identities=31% Similarity=0.433 Sum_probs=30.3
Q ss_pred CccEEEECCChHHHHHHHHHHh-CCCcEEEEcc
Q 008860 72 DFDLFTIGAGSGGVRASRFAAN-FGASVAICEL 103 (551)
Q Consensus 72 ~~dVvIIGgG~aGl~aA~~l~~-~G~~V~liE~ 103 (551)
.||+||||||.||+.+|.+|++ .+.+|+|||+
T Consensus 2 ~yD~IIVG~G~aG~v~A~rLse~~~~~VlllEa 34 (566)
T 3fim_B 2 DFDYVVVGAGNAGNVVAARLTEDPDVSVLVLEA 34 (566)
T ss_dssp CEEEEESCCSTTHHHHHHHHTTSTTCCEEEECS
T ss_pred CcCEEEECCcHHHHHHHHHHHhCcCCcEEEEec
Confidence 4999999999999999999999 7999999994
|
| >3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer, GMC oxidoredu PHBH fold, rossmann domain, oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A* 2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A* 3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A* 3fdy_A* ... | Back alignment and structure |
|---|
Probab=96.33 E-value=0.008 Score=64.79 Aligned_cols=33 Identities=27% Similarity=0.359 Sum_probs=30.5
Q ss_pred CeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecC
Q 008860 246 EKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQK 278 (551)
Q Consensus 246 ~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~ 278 (551)
..|+|||+|..|+.+|..|++.|.+|+++++.+
T Consensus 47 ~dvvIIG~G~aGl~aA~~l~~~G~~V~liE~~~ 79 (623)
T 3pl8_A 47 YDVVIVGSGPIGCTYARELVGAGYKVAMFDIGE 79 (623)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred CCEEEECCcHHHHHHHHHHHhCCCcEEEEeccC
Confidence 379999999999999999999999999998765
|
| >1gpe_A Protein (glucose oxidase); oxidoreductase(flavoprotein); HET: NAG BMA MAN FAD; 1.80A {Penicillium amagasakiense} SCOP: c.3.1.2 d.16.1.1 | Back alignment and structure |
|---|
Probab=96.25 E-value=0.0025 Score=68.27 Aligned_cols=33 Identities=18% Similarity=0.241 Sum_probs=30.9
Q ss_pred CCccEEEECCChHHHHHHHHHHh-CCCcEEEEcc
Q 008860 71 YDFDLFTIGAGSGGVRASRFAAN-FGASVAICEL 103 (551)
Q Consensus 71 ~~~dVvIIGgG~aGl~aA~~l~~-~G~~V~liE~ 103 (551)
.+||++|||+|++|+.+|.+|++ .|.+|+|||+
T Consensus 23 ~~~d~iivG~G~~g~~~a~~l~~~~~~~v~~~e~ 56 (587)
T 1gpe_A 23 KTYDYIIAGGGLTGLTVAAKLTENPKIKVLVIEK 56 (587)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHTSTTCCEEEEES
T ss_pred ccCCEEEECcCHHHHHHHHHHHhCCCCcEEEEec
Confidence 35999999999999999999999 8999999994
|
| >2jbv_A Choline oxidase; alcohol oxidation, flavoenyzme oxidase, covalently linked FAD, C4A-adduct, flavoprotein, oxidoreductase; HET: FAO; 1.86A {Arthrobacter globiformis} PDB: 3nne_A* 3ljp_A* | Back alignment and structure |
|---|
Probab=96.21 E-value=0.0026 Score=67.60 Aligned_cols=33 Identities=30% Similarity=0.473 Sum_probs=30.7
Q ss_pred CCccEEEECCChHHHHHHHHHHhC-CCcEEEEcc
Q 008860 71 YDFDLFTIGAGSGGVRASRFAANF-GASVAICEL 103 (551)
Q Consensus 71 ~~~dVvIIGgG~aGl~aA~~l~~~-G~~V~liE~ 103 (551)
..||++|||+|++|+.+|.+|++. |.+|+|+|+
T Consensus 12 ~~~d~~ivG~G~~G~~~a~~l~~~~~~~v~~~e~ 45 (546)
T 2jbv_A 12 REFDYIVVGGGSAGAAVAARLSEDPAVSVALVEA 45 (546)
T ss_dssp CEEEEEEECCSHHHHHHHHHHTTSTTSCEEEECS
T ss_pred CcCCEEEECcCHHHHHHHHHHHhCCCCCEEEEec
Confidence 359999999999999999999997 899999994
|
| >4b63_A L-ornithine N5 monooxygenase; oxidoreductase, siderophore, flavin; HET: FAD NAP; 1.90A {Aspergillus fumigatus} PDB: 4b64_A* 4b65_A* 4b66_A* 4b67_A* 4b68_A* 4b69_A* | Back alignment and structure |
|---|
Probab=96.08 E-value=0.025 Score=59.28 Aligned_cols=100 Identities=15% Similarity=0.173 Sum_probs=69.1
Q ss_pred eEEEEcCcHHHHHHHHHHHhCC--------------CeEEEEeecCcc-------CCC----------------------
Q 008860 247 KIAIVGGGYIALEFAGIFSGLT--------------SEVHVFIRQKKV-------LRG---------------------- 283 (551)
Q Consensus 247 ~vvViG~G~~g~e~a~~l~~~g--------------~~Vtlv~~~~~~-------l~~---------------------- 283 (551)
.|+|||+|+.|+-+|..|.+.| ....++++.+.+ ++.
T Consensus 41 Dvi~IGaGp~gLa~A~~L~~~~~~~~~~~~~~~~~~~~~~f~e~~~~f~Wh~g~~~p~~~~q~~fl~Dlvtl~~P~s~~s 120 (501)
T 4b63_A 41 DLLCVGFGPASLAIAIALHDALDPRLNKSASNIHAQPKICFLERQKQFAWHSGMLVPGSKMQISFIKDLATLRDPRSSFT 120 (501)
T ss_dssp EEEEECCSHHHHHHHHHHHHHHCTTTCTTC----CCCCEEEEESSSSCCSSGGGCCTTCBCSSCGGGSSSTTTCTTCTTS
T ss_pred cEEEEcccHHHHHHHHHHHhcCCCceEEeccccCCCcceeeEeccCCCCcCCCCCCCCccccccchhhhccccCCCCccc
Confidence 5999999999999999887632 345677765431 110
Q ss_pred --------------------C--CHHHHHHHHHHHHhcCcEEEcCcccEEEEEcCC-------ceEEEEECCC-----eE
Q 008860 284 --------------------F--DEDIRDFVAEQMSLRGIEFHTEESPQAILKSTD-------GSLSVKTNKG-----TV 329 (551)
Q Consensus 284 --------------------~--~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~-------~~~~V~~~~G-----~~ 329 (551)
+ -.++.+.++...++.+..+.++++|++++..+. ....|++.++ ++
T Consensus 121 f~~yl~~~~rl~~f~~~~~~~p~r~E~~~Yl~~~A~~~~~~vrf~~~V~~v~~~~~~~~~~~~~~~~V~~~~~~~g~~~~ 200 (501)
T 4b63_A 121 FLNYLHQKGRLIHFTNLSTFLPARLEFEDYMRWCAQQFSDVVAYGEEVVEVIPGKSDPSSSVVDFFTVRSRNVETGEISA 200 (501)
T ss_dssp HHHHHHHHTCHHHHHTTCCSCCBHHHHHHHHHHHHHTTGGGEEESEEEEEEEEECSSTTSSCBCEEEEEEEETTTCCEEE
T ss_pred hHHHHHHhCCccCCccccCCCCCHHHHHHHHHHHHHHcCCceEcceEEEeeccccccccccccceEEEEEecCCCceEEE
Confidence 0 123445555555666778999999999986442 1356766543 36
Q ss_pred EEeeEEEEecCcCCCCC
Q 008860 330 DGFSHVMFATGRRPNTK 346 (551)
Q Consensus 330 i~~d~vi~a~G~~p~~~ 346 (551)
+.|+.||+|+|..|...
T Consensus 201 ~~ar~vVlatG~~P~iP 217 (501)
T 4b63_A 201 RRTRKVVIAIGGTAKMP 217 (501)
T ss_dssp EEEEEEEECCCCEECCC
T ss_pred EEeCEEEECcCCCCCCC
Confidence 88999999999988765
|
| >3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=95.38 E-value=0.012 Score=55.29 Aligned_cols=34 Identities=29% Similarity=0.468 Sum_probs=31.6
Q ss_pred eEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCcc
Q 008860 247 KIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKV 280 (551)
Q Consensus 247 ~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~ 280 (551)
.|+|||+|+.|+-+|..|++.|.+|+++++.+.+
T Consensus 4 dV~IIGaGpaGL~aA~~La~~G~~V~v~Ek~~~~ 37 (336)
T 3kkj_A 4 PIAIIGTGIAGLSAAQALTAAGHQVHLFDKSRGS 37 (336)
T ss_dssp CEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred CEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCC
Confidence 5999999999999999999999999999987654
|
| >3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas} | Back alignment and structure |
|---|
Probab=95.05 E-value=0.041 Score=59.57 Aligned_cols=52 Identities=12% Similarity=-0.031 Sum_probs=36.7
Q ss_pred HHHHHHhc--CcEEEcCcccEEEEEcCC---ceEEEEE---CCCe--EEEeeEEEEecCcCC
Q 008860 292 VAEQMSLR--GIEFHTEESPQAILKSTD---GSLSVKT---NKGT--VDGFSHVMFATGRRP 343 (551)
Q Consensus 292 l~~~l~~~--Gv~i~~~~~v~~i~~~~~---~~~~V~~---~~G~--~i~~d~vi~a~G~~p 343 (551)
+.+.+++. ||+++.++.+.++..+++ .+..|.. .+|+ .+.++.||+|||-..
T Consensus 172 L~~~a~~~~~gV~i~~~~~v~dLi~~~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VVLATGG~g 233 (662)
T 3gyx_A 172 VAEAAKNALGQDRIIERIFIVKLLLDKNTPNRIAGAVGFNLRANEVHIFKANAMVVACGGAV 233 (662)
T ss_dssp HHHHHHHHHCTTTEECSEEECCCEECSSSTTBEEEEEEEESSSSCEEEEECSEEEECCCCBC
T ss_pred HHHHHHhcCCCcEEEEceEEEEEEEeCCccceEEEEEEEEcCCCcEEEEEeCEEEECCCccc
Confidence 34444555 899999988888877665 4444433 4554 588999999999654
|
| >3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=94.32 E-value=0.053 Score=45.88 Aligned_cols=31 Identities=13% Similarity=0.063 Sum_probs=29.4
Q ss_pred CccEEEECCChHHHHHHHHHHhCCCcEEEEc
Q 008860 72 DFDLFTIGAGSGGVRASRFAANFGASVAICE 102 (551)
Q Consensus 72 ~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE 102 (551)
+-+|+|||.|..|...|..|.+.|++|+++|
T Consensus 7 ~~~viIiG~G~~G~~la~~L~~~g~~v~vid 37 (140)
T 3fwz_A 7 CNHALLVGYGRVGSLLGEKLLASDIPLVVIE 37 (140)
T ss_dssp CSCEEEECCSHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCCEEEEE
Confidence 4579999999999999999999999999999
|
| >4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis} | Back alignment and structure |
|---|
Probab=94.25 E-value=0.029 Score=58.61 Aligned_cols=35 Identities=17% Similarity=0.275 Sum_probs=30.9
Q ss_pred CeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCcc
Q 008860 246 EKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKV 280 (551)
Q Consensus 246 ~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~ 280 (551)
|+|+|||+|..|+-+|..|++.|.+|+++++.+.+
T Consensus 2 k~VvVIGaG~~GL~aA~~La~~G~~V~VlEa~~~~ 36 (501)
T 4dgk_A 2 KPTTVIGAGFGGLALAIRLQAAGIPVLLLEQRDKP 36 (501)
T ss_dssp CCEEEECCHHHHHHHHHHHHHTTCCEEEECCC---
T ss_pred CCEEEECCcHHHHHHHHHHHHCCCcEEEEccCCCC
Confidence 68999999999999999999999999999998765
|
| >3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=94.20 E-value=0.048 Score=46.09 Aligned_cols=30 Identities=23% Similarity=0.402 Sum_probs=28.9
Q ss_pred ccEEEECCChHHHHHHHHHHhCCCcEEEEc
Q 008860 73 FDLFTIGAGSGGVRASRFAANFGASVAICE 102 (551)
Q Consensus 73 ~dVvIIGgG~aGl~aA~~l~~~G~~V~liE 102 (551)
.+++|+|+|..|...|..|.+.|++|+++|
T Consensus 7 ~~v~I~G~G~iG~~la~~L~~~g~~V~~id 36 (141)
T 3llv_A 7 YEYIVIGSEAAGVGLVRELTAAGKKVLAVD 36 (141)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCEEEEE
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEE
Confidence 579999999999999999999999999999
|
| >3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium} | Back alignment and structure |
|---|
Probab=94.13 E-value=0.052 Score=49.92 Aligned_cols=75 Identities=16% Similarity=0.192 Sum_probs=51.6
Q ss_pred CCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCCCCCHHHHHHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEE
Q 008860 244 KPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVK 323 (551)
Q Consensus 244 ~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~ 323 (551)
.+++|+|||+|.+|...+..|.+.|++|+++.+. +.++ +.+..++.+++++...-
T Consensus 30 ~gk~VLVVGgG~va~~ka~~Ll~~GA~VtVvap~------~~~~----l~~l~~~~~i~~i~~~~--------------- 84 (223)
T 3dfz_A 30 KGRSVLVVGGGTIATRRIKGFLQEGAAITVVAPT------VSAE----INEWEAKGQLRVKRKKV--------------- 84 (223)
T ss_dssp TTCCEEEECCSHHHHHHHHHHGGGCCCEEEECSS------CCHH----HHHHHHTTSCEEECSCC---------------
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCC------CCHH----HHHHHHcCCcEEEECCC---------------
Confidence 3689999999999999999999999999999753 2333 34444555676653311
Q ss_pred ECCCeEEEeeEEEEecCcCCC
Q 008860 324 TNKGTVDGFSHVMFATGRRPN 344 (551)
Q Consensus 324 ~~~G~~i~~d~vi~a~G~~p~ 344 (551)
.....-.+|.||.|||-...
T Consensus 85 -~~~dL~~adLVIaAT~d~~~ 104 (223)
T 3dfz_A 85 -GEEDLLNVFFIVVATNDQAV 104 (223)
T ss_dssp -CGGGSSSCSEEEECCCCTHH
T ss_pred -CHhHhCCCCEEEECCCCHHH
Confidence 01111237999999887543
|
| >1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=94.04 E-value=0.048 Score=45.75 Aligned_cols=30 Identities=13% Similarity=0.297 Sum_probs=28.8
Q ss_pred ccEEEECCChHHHHHHHHHHhCCCcEEEEc
Q 008860 73 FDLFTIGAGSGGVRASRFAANFGASVAICE 102 (551)
Q Consensus 73 ~dVvIIGgG~aGl~aA~~l~~~G~~V~liE 102 (551)
++|+|||+|..|...|..|.+.|++|+++|
T Consensus 5 m~i~IiG~G~iG~~~a~~L~~~g~~v~~~d 34 (140)
T 1lss_A 5 MYIIIAGIGRVGYTLAKSLSEKGHDIVLID 34 (140)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEE
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEE
Confidence 579999999999999999999999999999
|
| >3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A* | Back alignment and structure |
|---|
Probab=93.81 E-value=0.05 Score=55.10 Aligned_cols=36 Identities=19% Similarity=0.227 Sum_probs=32.9
Q ss_pred CCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCcc
Q 008860 245 PEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKV 280 (551)
Q Consensus 245 ~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~ 280 (551)
..+|+|||+|+.|+-+|..|++.|.+|+++++.+.+
T Consensus 23 ~~dV~IVGaG~aGl~~A~~La~~G~~V~v~E~~~~~ 58 (407)
T 3rp8_A 23 HMKAIVIGAGIGGLSAAVALKQSGIDCDVYEAVKEI 58 (407)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSCC
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCC
Confidence 358999999999999999999999999999998754
|
| >2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A* | Back alignment and structure |
|---|
Probab=93.77 E-value=0.057 Score=56.33 Aligned_cols=61 Identities=20% Similarity=0.312 Sum_probs=46.7
Q ss_pred CCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCCCCC----------HH--------HHHHHHHHHHhcCcEEE
Q 008860 244 KPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFD----------ED--------IRDFVAEQMSLRGIEFH 304 (551)
Q Consensus 244 ~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~~~~----------~~--------~~~~l~~~l~~~Gv~i~ 304 (551)
.+.+|+|||+|.+|+.+|..|.+.|.+|+++++.+++..... .+ ....+.+.+++.|+++.
T Consensus 32 ~~~~v~IiGaG~~Gl~aA~~l~~~g~~v~vlE~~~~~gg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~g~~~~ 110 (498)
T 2iid_A 32 NPKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASERPGGRVRTYRNEEAGWYANLGPMRLPEKHRIVREYIRKFDLRLN 110 (498)
T ss_dssp SCCEEEEECCBHHHHHHHHHHHHHTCEEEEECSSSSSBTTCCEEEETTTTEEEESSCCCEETTCHHHHHHHHHTTCCEE
T ss_pred CCCCEEEECCCHHHHHHHHHHHhCCCeEEEEECCCCCCCceeeeccCCCCchhhcCcccccchHHHHHHHHHHhCCCce
Confidence 467899999999999999999999999999998876543210 01 13556778888888653
|
| >2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A* | Back alignment and structure |
|---|
Probab=93.61 E-value=0.096 Score=45.07 Aligned_cols=38 Identities=24% Similarity=0.226 Sum_probs=32.9
Q ss_pred CCCCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCc
Q 008860 242 PSKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKK 279 (551)
Q Consensus 242 ~~~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~ 279 (551)
....++++|+|+|.+|..++..|.+.|.+|+++++.+.
T Consensus 16 ~~~~~~v~IiG~G~iG~~la~~L~~~g~~V~vid~~~~ 53 (155)
T 2g1u_A 16 KQKSKYIVIFGCGRLGSLIANLASSSGHSVVVVDKNEY 53 (155)
T ss_dssp -CCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGG
T ss_pred ccCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEECCHH
Confidence 33467999999999999999999999999999988653
|
| >3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi} | Back alignment and structure |
|---|
Probab=93.60 E-value=0.062 Score=43.48 Aligned_cols=31 Identities=19% Similarity=0.364 Sum_probs=28.9
Q ss_pred CccEEEECCChHHHHHHHHHHhCC-CcEEEEc
Q 008860 72 DFDLFTIGAGSGGVRASRFAANFG-ASVAICE 102 (551)
Q Consensus 72 ~~dVvIIGgG~aGl~aA~~l~~~G-~~V~liE 102 (551)
+.+|+|+|+|..|...+..|.+.| ++|++++
T Consensus 5 ~~~v~I~G~G~iG~~~~~~l~~~g~~~v~~~~ 36 (118)
T 3ic5_A 5 RWNICVVGAGKIGQMIAALLKTSSNYSVTVAD 36 (118)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHCSSEEEEEEE
T ss_pred cCeEEEECCCHHHHHHHHHHHhCCCceEEEEe
Confidence 357999999999999999999999 8999999
|
| >3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58} | Back alignment and structure |
|---|
Probab=93.60 E-value=0.081 Score=51.91 Aligned_cols=78 Identities=14% Similarity=0.072 Sum_probs=56.9
Q ss_pred CCeEEEEcCcHHHHH-HHHHHHhCCCeEEEEeecCccCCCCCHHHHHHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEE
Q 008860 245 PEKIAIVGGGYIALE-FAGIFSGLTSEVHVFIRQKKVLRGFDEDIRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVK 323 (551)
Q Consensus 245 ~~~vvViG~G~~g~e-~a~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~ 323 (551)
.+++.+||.|-+|+. +|..|.+.|.+|++.+..+. + . ..+.|++.|++++.+.....+
T Consensus 4 ~~~i~~iGiGg~Gms~~A~~L~~~G~~V~~~D~~~~-----~-~----~~~~L~~~gi~v~~g~~~~~l----------- 62 (326)
T 3eag_A 4 MKHIHIIGIGGTFMGGLAAIAKEAGFEVSGCDAKMY-----P-P----MSTQLEALGIDVYEGFDAAQL----------- 62 (326)
T ss_dssp CCEEEEESCCSHHHHHHHHHHHHTTCEEEEEESSCC-----T-T----HHHHHHHTTCEEEESCCGGGG-----------
T ss_pred CcEEEEEEECHHHHHHHHHHHHhCCCEEEEEcCCCC-----c-H----HHHHHHhCCCEEECCCCHHHc-----------
Confidence 578999999999996 89999999999999987653 1 1 235577889998876332111
Q ss_pred ECCCeEEEeeEEEEecCcCCCCCC
Q 008860 324 TNKGTVDGFSHVMFATGRRPNTKN 347 (551)
Q Consensus 324 ~~~G~~i~~d~vi~a~G~~p~~~~ 347 (551)
.. -.+|.||++.|..|....
T Consensus 63 -~~---~~~d~vV~Spgi~~~~p~ 82 (326)
T 3eag_A 63 -DE---FKADVYVIGNVAKRGMDV 82 (326)
T ss_dssp -GS---CCCSEEEECTTCCTTCHH
T ss_pred -CC---CCCCEEEECCCcCCCCHH
Confidence 00 136899999998776543
|
| >1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=93.54 E-value=0.08 Score=45.45 Aligned_cols=31 Identities=10% Similarity=0.064 Sum_probs=29.2
Q ss_pred CccEEEECCChHHHHHHHHHHhCCCcEEEEc
Q 008860 72 DFDLFTIGAGSGGVRASRFAANFGASVAICE 102 (551)
Q Consensus 72 ~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE 102 (551)
+.+++|+|+|..|...|..|.+.|++|+++|
T Consensus 3 ~~~vlI~G~G~vG~~la~~L~~~g~~V~vid 33 (153)
T 1id1_A 3 KDHFIVCGHSILAINTILQLNQRGQNVTVIS 33 (153)
T ss_dssp CSCEEEECCSHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCCEEEEE
Confidence 3579999999999999999999999999999
|
| >2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A* | Back alignment and structure |
|---|
Probab=93.51 E-value=0.075 Score=45.79 Aligned_cols=30 Identities=23% Similarity=0.348 Sum_probs=28.8
Q ss_pred ccEEEECCChHHHHHHHHHHhCCCcEEEEc
Q 008860 73 FDLFTIGAGSGGVRASRFAANFGASVAICE 102 (551)
Q Consensus 73 ~dVvIIGgG~aGl~aA~~l~~~G~~V~liE 102 (551)
.+|+|||+|..|...|..|.+.|.+|+++|
T Consensus 20 ~~v~IiG~G~iG~~la~~L~~~g~~V~vid 49 (155)
T 2g1u_A 20 KYIVIFGCGRLGSLIANLASSSGHSVVVVD 49 (155)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEE
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEE
Confidence 579999999999999999999999999999
|
| >3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A* | Back alignment and structure |
|---|
Probab=93.38 E-value=0.068 Score=54.24 Aligned_cols=35 Identities=20% Similarity=0.181 Sum_probs=32.4
Q ss_pred CeEEEEcCcHHHHHHHHHHHhCCCe-EEEEeecCcc
Q 008860 246 EKIAIVGGGYIALEFAGIFSGLTSE-VHVFIRQKKV 280 (551)
Q Consensus 246 ~~vvViG~G~~g~e~a~~l~~~g~~-Vtlv~~~~~~ 280 (551)
.+|+|||+|+.|+.+|..|++.|.+ |+++++.+.+
T Consensus 5 ~dVvIVGaG~aGl~~A~~L~~~G~~~v~v~E~~~~~ 40 (410)
T 3c96_A 5 IDILIAGAGIGGLSCALALHQAGIGKVTLLESSSEI 40 (410)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSEEEEEESSSSC
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCCeEEEEECCCCc
Confidence 4799999999999999999999999 9999998754
|
| >3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=93.36 E-value=0.098 Score=53.86 Aligned_cols=80 Identities=16% Similarity=0.107 Sum_probs=58.6
Q ss_pred CCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCCCCCHHHHHHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEE
Q 008860 245 PEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKT 324 (551)
Q Consensus 245 ~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~ 324 (551)
++++.|||.|.+|+.+|..|.+.|.+|++.+..+.-. ....+.|++.|++++.+....++
T Consensus 9 ~k~v~viG~G~sG~s~A~~l~~~G~~V~~~D~~~~~~--------~~~~~~L~~~gi~~~~g~~~~~~------------ 68 (451)
T 3lk7_A 9 NKKVLVLGLARSGEAAARLLAKLGAIVTVNDGKPFDE--------NPTAQSLLEEGIKVVCGSHPLEL------------ 68 (451)
T ss_dssp TCEEEEECCTTTHHHHHHHHHHTTCEEEEEESSCGGG--------CHHHHHHHHTTCEEEESCCCGGG------------
T ss_pred CCEEEEEeeCHHHHHHHHHHHhCCCEEEEEeCCcccC--------ChHHHHHHhCCCEEEECCChHHh------------
Confidence 6899999999999999999999999999998765210 12335677889999877431100
Q ss_pred CCCeEEEeeEEEEecCcCCCCCC
Q 008860 325 NKGTVDGFSHVMFATGRRPNTKN 347 (551)
Q Consensus 325 ~~G~~i~~d~vi~a~G~~p~~~~ 347 (551)
-++ .+|.||+++|..+....
T Consensus 69 ~~~---~~d~vv~spgi~~~~p~ 88 (451)
T 3lk7_A 69 LDE---DFCYMIKNPGIPYNNPM 88 (451)
T ss_dssp GGS---CEEEEEECTTSCTTSHH
T ss_pred hcC---CCCEEEECCcCCCCChh
Confidence 001 17999999999876543
|
| >3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum} | Back alignment and structure |
|---|
Probab=93.24 E-value=0.07 Score=53.38 Aligned_cols=34 Identities=15% Similarity=0.192 Sum_probs=31.6
Q ss_pred eEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCcc
Q 008860 247 KIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKV 280 (551)
Q Consensus 247 ~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~ 280 (551)
.|+|||+|+.|+-+|..|++.|.+|+++++.+.+
T Consensus 6 DViIVGaGpaGl~~A~~La~~G~~V~v~Er~~~~ 39 (397)
T 3oz2_A 6 DVLVVGGGPGGSTAARYAAKYGLKTLMIEKRPEI 39 (397)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEECSSSST
T ss_pred CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCC
Confidence 4899999999999999999999999999997764
|
| >2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G* 3cpi_G 3cph_G 3cpj_G* | Back alignment and structure |
|---|
Probab=93.19 E-value=0.15 Score=52.58 Aligned_cols=45 Identities=20% Similarity=0.259 Sum_probs=39.4
Q ss_pred CCCCccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCeecc
Q 008860 69 SHYDFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVL 122 (551)
Q Consensus 69 ~~~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~~~ 122 (551)
|..++||||||||++||+||..|++.|++|+|+|+ ...+||.+..
T Consensus 8 ~~~~~dvvVIGaG~~GL~aA~~La~~G~~V~vlE~---------~~~~GG~~~t 52 (453)
T 2bcg_G 8 IDTDYDVIVLGTGITECILSGLLSVDGKKVLHIDK---------QDHYGGEAAS 52 (453)
T ss_dssp CCCBCSEEEECCSHHHHHHHHHHHHTTCCEEEECS---------SSSSCGGGCE
T ss_pred ccccCCEEEECcCHHHHHHHHHHHHCCCeEEEEeC---------CCCCCccccc
Confidence 44568999999999999999999999999999994 6678888743
|
| >3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=93.15 E-value=0.076 Score=54.31 Aligned_cols=35 Identities=26% Similarity=0.428 Sum_probs=31.5
Q ss_pred CCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecC
Q 008860 244 KPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQK 278 (551)
Q Consensus 244 ~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~ 278 (551)
..++|+|||+|+.|+.+|..|++.|.+|+++++.+
T Consensus 21 m~~~ViIVGaGpaGl~~A~~La~~G~~V~viE~~~ 55 (430)
T 3ihm_A 21 MKKRIGIVGAGTAGLHLGLFLRQHDVDVTVYTDRK 55 (430)
T ss_dssp --CEEEEECCHHHHHHHHHHHHHTTCEEEEEESCC
T ss_pred CCCCEEEECCcHHHHHHHHHHHHCCCeEEEEcCCC
Confidence 45689999999999999999999999999999876
|
| >1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution, hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3 d.16.1.6 PDB: 1lv0_A* 1gnd_A | Back alignment and structure |
|---|
Probab=93.06 E-value=0.096 Score=53.61 Aligned_cols=45 Identities=18% Similarity=0.214 Sum_probs=39.2
Q ss_pred CCCCCccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCeec
Q 008860 68 PSHYDFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCV 121 (551)
Q Consensus 68 ~~~~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~~ 121 (551)
.|..++||+|||+|++|+++|..|++.|++|+++|+ ....||.|.
T Consensus 2 ~~~~~~~v~iiG~G~~gl~~a~~l~~~g~~v~~~e~---------~~~~gg~~~ 46 (433)
T 1d5t_A 2 HMDEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDR---------NPYYGGESS 46 (433)
T ss_dssp CCCSBCSEEEECCSHHHHHHHHHHHHTTCCEEEECS---------SSSSCTTSC
T ss_pred CCCCcCCEEEECcCHHHHHHHHHHHHCCCcEEEEec---------CCCcccccc
Confidence 355679999999999999999999999999999994 566788764
|
| >2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces} | Back alignment and structure |
|---|
Probab=92.95 E-value=0.098 Score=54.66 Aligned_cols=56 Identities=21% Similarity=0.194 Sum_probs=40.1
Q ss_pred CeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCCC-CCHHHHHHHHHHHHhcCc
Q 008860 246 EKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRG-FDEDIRDFVAEQMSLRGI 301 (551)
Q Consensus 246 ~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~~-~~~~~~~~l~~~l~~~Gv 301 (551)
.+|+|||+|+.|+-+|..|++.|.+|+++++.+..... -...+...-.+.|++.|+
T Consensus 13 ~dVlIVGaGpaGl~~A~~La~~G~~v~vlE~~~~~~~~~r~~~l~~~~~~~l~~lGl 69 (499)
T 2qa2_A 13 ASVIVVGAGPAGLMLAGELRLGGVDVMVLEQLPQRTGESRGLGFTARTMEVFDQRGI 69 (499)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEEESCSSCCCCCCSEEECHHHHHHHHHTTC
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCceeEECHHHHHHHHHCCC
Confidence 47999999999999999999999999999997654321 111122333445555554
|
| >3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=92.94 E-value=0.068 Score=54.28 Aligned_cols=33 Identities=18% Similarity=0.257 Sum_probs=31.0
Q ss_pred CeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecC
Q 008860 246 EKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQK 278 (551)
Q Consensus 246 ~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~ 278 (551)
.+|+|||+|..|+-+|..|++.|.+|+++++.+
T Consensus 6 ~dVvIIGgG~aGl~~A~~La~~G~~V~v~E~~~ 38 (421)
T 3nix_A 6 VDVLVIGAGPAGTVAASLVNKSGFKVKIVEKQK 38 (421)
T ss_dssp EEEEEECCSHHHHHHHHHHHTTTCCEEEECSSC
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCC
Confidence 479999999999999999999999999999875
|
| >3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=92.61 E-value=0.12 Score=55.21 Aligned_cols=35 Identities=26% Similarity=0.350 Sum_probs=32.1
Q ss_pred CCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCc
Q 008860 245 PEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKK 279 (551)
Q Consensus 245 ~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~ 279 (551)
..+|+|||||..|+-+|..|++.|.+|+++++.+.
T Consensus 23 ~~DVvIVGgG~AGl~aA~~Lar~G~~V~LiEr~~~ 57 (591)
T 3i3l_A 23 RSKVAIIGGGPAGSVAGLTLHKLGHDVTIYERSAF 57 (591)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCS
T ss_pred CCCEEEECcCHHHHHHHHHHHcCCCCEEEEcCCCC
Confidence 36899999999999999999999999999998753
|
| >3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=92.57 E-value=0.15 Score=49.69 Aligned_cols=84 Identities=19% Similarity=0.296 Sum_probs=49.2
Q ss_pred hcCCCCCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCCCCCHHHHHHHHHHHHhcCcEEEcCcccEEEEEcCCc
Q 008860 239 LDLPSKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRDFVAEQMSLRGIEFHTEESPQAILKSTDG 318 (551)
Q Consensus 239 ~~~~~~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~ 318 (551)
.++.....+|.|||+|.+|.-+|..|.+.|.+|+++ +.+. -.+.+++.|+.+... .. .... .
T Consensus 13 ~~~~~~~~kI~IiGaGa~G~~~a~~L~~~G~~V~l~-~~~~------------~~~~i~~~g~~~~~~-~~-~~~~---~ 74 (318)
T 3hwr_A 13 ENLYFQGMKVAIMGAGAVGCYYGGMLARAGHEVILI-ARPQ------------HVQAIEATGLRLETQ-SF-DEQV---K 74 (318)
T ss_dssp -------CEEEEESCSHHHHHHHHHHHHTTCEEEEE-CCHH------------HHHHHHHHCEEEECS-SC-EEEE---C
T ss_pred hhhhccCCcEEEECcCHHHHHHHHHHHHCCCeEEEE-EcHh------------HHHHHHhCCeEEEcC-CC-cEEE---e
Confidence 334445679999999999999999999999999998 5321 123455567776532 11 1110 0
Q ss_pred eEEEEECCCeE-EEeeEEEEecCcC
Q 008860 319 SLSVKTNKGTV-DGFSHVMFATGRR 342 (551)
Q Consensus 319 ~~~V~~~~G~~-i~~d~vi~a~G~~ 342 (551)
+.+. .+-+. -.+|.||+|+...
T Consensus 75 -~~~~-~~~~~~~~~D~vilavk~~ 97 (318)
T 3hwr_A 75 -VSAS-SDPSAVQGADLVLFCVKST 97 (318)
T ss_dssp -CEEE-SCGGGGTTCSEEEECCCGG
T ss_pred -eeee-CCHHHcCCCCEEEEEcccc
Confidence 1121 22111 2589999997654
|
| >2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces} | Back alignment and structure |
|---|
Probab=92.53 E-value=0.1 Score=54.52 Aligned_cols=35 Identities=26% Similarity=0.289 Sum_probs=31.9
Q ss_pred CeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCcc
Q 008860 246 EKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKV 280 (551)
Q Consensus 246 ~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~ 280 (551)
.+|+|||+|+.|+-+|..|++.|.+|+++++.+..
T Consensus 12 ~dVlIVGaGpaGl~~A~~La~~G~~v~vlE~~~~~ 46 (500)
T 2qa1_A 12 AAVIVVGAGPAGMMLAGELRLAGVEVVVLERLVER 46 (500)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCEEEEESCCC-
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCC
Confidence 47999999999999999999999999999997754
|
| >2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase; HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB: 2r0g_A* 2r0p_A* 3ept_A* | Back alignment and structure |
|---|
Probab=92.41 E-value=0.12 Score=54.70 Aligned_cols=35 Identities=17% Similarity=0.220 Sum_probs=32.3
Q ss_pred CeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCcc
Q 008860 246 EKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKV 280 (551)
Q Consensus 246 ~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~ 280 (551)
.+|+|||+|+.|+-+|..|++.|.+|+++++.+..
T Consensus 27 ~dVlIVGaGpaGl~~A~~La~~G~~V~vlEr~~~~ 61 (549)
T 2r0c_A 27 TDVLILGGGPVGMALALDLAHRQVGHLVVEQTDGT 61 (549)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCSC
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCC
Confidence 37999999999999999999999999999998754
|
| >3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=92.38 E-value=0.33 Score=40.82 Aligned_cols=51 Identities=12% Similarity=0.098 Sum_probs=39.8
Q ss_pred CCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCCCCCHHHHHHHHHHHHhcCcEEEcC
Q 008860 244 KPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRDFVAEQMSLRGIEFHTE 306 (551)
Q Consensus 244 ~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~~~ 306 (551)
..++++|+|.|.+|..++..|.+.|.+|+++++.+ +.. +.+++.|+.++.+
T Consensus 6 ~~~~viIiG~G~~G~~la~~L~~~g~~v~vid~~~--------~~~----~~~~~~g~~~i~g 56 (140)
T 3fwz_A 6 ICNHALLVGYGRVGSLLGEKLLASDIPLVVIETSR--------TRV----DELRERGVRAVLG 56 (140)
T ss_dssp CCSCEEEECCSHHHHHHHHHHHHTTCCEEEEESCH--------HHH----HHHHHTTCEEEES
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCH--------HHH----HHHHHcCCCEEEC
Confidence 45789999999999999999999999999999853 222 2344567776654
|
| >3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=92.38 E-value=0.12 Score=52.58 Aligned_cols=35 Identities=17% Similarity=0.252 Sum_probs=32.0
Q ss_pred CeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCcc
Q 008860 246 EKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKV 280 (551)
Q Consensus 246 ~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~ 280 (551)
++|+|||+|..|+-+|..|++.|.+|+++++.+.+
T Consensus 1 ~dVvVIGaGiaGLsaA~~La~~G~~V~vlE~~~~~ 35 (421)
T 3nrn_A 1 MRAVVVGAGLGGLLAGAFLARNGHEIIVLEKSAMI 35 (421)
T ss_dssp CEEEEESCSHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCC
Confidence 37999999999999999999999999999987654
|
| >2pyx_A Tryptophan halogenase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative biosynthetic protein; HET: MSE TLA PG4; 1.50A {Shewanella frigidimarina} | Back alignment and structure |
|---|
Probab=92.20 E-value=0.12 Score=54.47 Aligned_cols=34 Identities=24% Similarity=0.355 Sum_probs=31.2
Q ss_pred CCeEEEEcCcHHHHHHHHHHHh------------CCCeEEEEeecC
Q 008860 245 PEKIAIVGGGYIALEFAGIFSG------------LTSEVHVFIRQK 278 (551)
Q Consensus 245 ~~~vvViG~G~~g~e~a~~l~~------------~g~~Vtlv~~~~ 278 (551)
..+|+|||||..|+-+|..|++ .|.+|+++++.+
T Consensus 7 ~~dVvIVGgG~aGl~aA~~La~~~~~~~~~~~~~~G~~V~liE~~~ 52 (526)
T 2pyx_A 7 ITEIIIVGGGTAGWITAGLLAAEHNVDKGVLAHSPKLNITLIESPD 52 (526)
T ss_dssp CCEEEEECCHHHHHHHHHHHHHHHHEETTEECSSCSCEEEEEECSS
T ss_pred CCeEEEECCCHHHHHHHHHHHhhhccccccccCCCCCeEEEEeCCC
Confidence 3689999999999999999999 899999999865
|
| >3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase; HET: FAD; 2.89A {Streptomyces argillaceus} | Back alignment and structure |
|---|
Probab=92.04 E-value=0.13 Score=54.59 Aligned_cols=35 Identities=23% Similarity=0.339 Sum_probs=31.7
Q ss_pred CeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCcc
Q 008860 246 EKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKV 280 (551)
Q Consensus 246 ~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~ 280 (551)
..|+|||+|+.|+-+|..|++.|.+|+++++.+..
T Consensus 50 ~DVvIVGaG~aGL~~A~~La~~G~~V~VlEr~~~~ 84 (570)
T 3fmw_A 50 TDVVVVGGGPVGLMLAGELRAGGVGALVLEKLVEP 84 (570)
T ss_dssp -CEEEECCSHHHHHHHHHHHHTTCCEEEEBSCSSC
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCCEEEEcCCCCC
Confidence 46999999999999999999999999999987654
|
| >2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A* | Back alignment and structure |
|---|
Probab=92.02 E-value=0.13 Score=43.12 Aligned_cols=30 Identities=20% Similarity=0.202 Sum_probs=28.6
Q ss_pred ccEEEECCChHHHHHHHHHHhCCCcEEEEc
Q 008860 73 FDLFTIGAGSGGVRASRFAANFGASVAICE 102 (551)
Q Consensus 73 ~dVvIIGgG~aGl~aA~~l~~~G~~V~liE 102 (551)
.+|+|+|+|..|...|..|.+.|.+|+++|
T Consensus 7 ~~v~I~G~G~iG~~~a~~l~~~g~~v~~~d 36 (144)
T 2hmt_A 7 KQFAVIGLGRFGGSIVKELHRMGHEVLAVD 36 (144)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCCEEEE
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCEEEEEe
Confidence 469999999999999999999999999999
|
| >3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=91.90 E-value=0.15 Score=51.84 Aligned_cols=34 Identities=32% Similarity=0.331 Sum_probs=31.7
Q ss_pred eEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCcc
Q 008860 247 KIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKV 280 (551)
Q Consensus 247 ~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~ 280 (551)
+|+|||+|..|+-+|..|++.|.+|+++++.+.+
T Consensus 2 dVvVIGaGiaGLsaA~~La~~G~~V~vlE~~~~~ 35 (425)
T 3ka7_A 2 KTVVIGAGLGGLLSAARLSKAGHEVEVFERLPIT 35 (425)
T ss_dssp EEEEECCBHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred cEEEECCCHHHHHHHHHHHhCCCceEEEeCCCCC
Confidence 6999999999999999999999999999997654
|
| >3fpz_A Thiazole biosynthetic enzyme; FAD, mitochondrion, N thiamine biosynthesis, transit peptide, biosynthetic protei; HET: AHZ; 1.82A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=91.85 E-value=0.1 Score=51.04 Aligned_cols=63 Identities=19% Similarity=0.176 Sum_probs=44.2
Q ss_pred CeEEEEcCcHHHHHHHHHHH--hCCCeEEEEeecCccCCC-------CC-HHHHHHHHHHHHhcCcEEEcCcc
Q 008860 246 EKIAIVGGGYIALEFAGIFS--GLTSEVHVFIRQKKVLRG-------FD-EDIRDFVAEQMSLRGIEFHTEES 308 (551)
Q Consensus 246 ~~vvViG~G~~g~e~a~~l~--~~g~~Vtlv~~~~~~l~~-------~~-~~~~~~l~~~l~~~Gv~i~~~~~ 308 (551)
..|+|||+|+.|+-+|..|+ +.|.+|+++++.+.+-.. ++ ..+...+.+.+++.|+++..+..
T Consensus 66 ~DV~IIGaGPAGlsAA~~la~~r~G~~V~viEk~~~~GG~~~~~~~~~~~~~l~~~~~~~~~e~Gv~~~~~~~ 138 (326)
T 3fpz_A 66 SDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGGSWLGGQLFSAMVMRKPAHLFLQELEIPYEDEGD 138 (326)
T ss_dssp ESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSCCTTTTCCSTTCCCEEEETTTHHHHHHTTCCCEECSS
T ss_pred CCEEEECCCHHHHHHHHHHHHhCCCCeEEEEECCCCCCceEEeCCccCCHHHHHHHHHHHHHHcCCEEEECCc
Confidence 36999999999999999996 469999999987654211 11 11223345567778888876644
|
| >4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A* | Back alignment and structure |
|---|
Probab=91.61 E-value=0.17 Score=48.47 Aligned_cols=31 Identities=19% Similarity=0.208 Sum_probs=29.4
Q ss_pred CccEEEECCChHHHHHHHHHHhCCCcEEEEc
Q 008860 72 DFDLFTIGAGSGGVRASRFAANFGASVAICE 102 (551)
Q Consensus 72 ~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE 102 (551)
..+|.|||+|.-|...|..+++.|++|+++|
T Consensus 4 ~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d 34 (283)
T 4e12_A 4 ITNVTVLGTGVLGSQIAFQTAFHGFAVTAYD 34 (283)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEEC
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCeEEEEe
Confidence 4579999999999999999999999999999
|
| >1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A* | Back alignment and structure |
|---|
Probab=91.50 E-value=0.18 Score=48.83 Aligned_cols=30 Identities=27% Similarity=0.390 Sum_probs=28.7
Q ss_pred ccEEEECCChHHHHHHHHHHhCCCcEEEEc
Q 008860 73 FDLFTIGAGSGGVRASRFAANFGASVAICE 102 (551)
Q Consensus 73 ~dVvIIGgG~aGl~aA~~l~~~G~~V~liE 102 (551)
.+|.|||+|.-|...|..|++.|++|+++|
T Consensus 16 ~~I~VIG~G~mG~~iA~~la~~G~~V~~~d 45 (302)
T 1f0y_A 16 KHVTVIGGGLMGAGIAQVAAATGHTVVLVD 45 (302)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEC
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEE
Confidence 469999999999999999999999999999
|
| >3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens} | Back alignment and structure |
|---|
Probab=91.49 E-value=0.16 Score=52.37 Aligned_cols=35 Identities=17% Similarity=0.313 Sum_probs=32.2
Q ss_pred CeEEEEcCcHHHHHHHHHHHhCCC--eEEEEeecCcc
Q 008860 246 EKIAIVGGGYIALEFAGIFSGLTS--EVHVFIRQKKV 280 (551)
Q Consensus 246 ~~vvViG~G~~g~e~a~~l~~~g~--~Vtlv~~~~~~ 280 (551)
++|+|||+|.+|+-+|..|++.|. +|+++++.+++
T Consensus 3 ~dVvVIGaGiaGLsaA~~L~~~G~~~~V~vlEa~~~~ 39 (477)
T 3nks_A 3 RTVVVLGGGISGLAASYHLSRAPCPPKVVLVESSERL 39 (477)
T ss_dssp CEEEEECCBHHHHHHHHHHHTSSSCCEEEEECSSSSS
T ss_pred ceEEEECCcHHHHHHHHHHHhCCCCCcEEEEeCCCCC
Confidence 589999999999999999999999 99999987654
|
| >3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis} | Back alignment and structure |
|---|
Probab=91.45 E-value=0.16 Score=50.16 Aligned_cols=34 Identities=21% Similarity=0.243 Sum_probs=31.4
Q ss_pred CeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCc
Q 008860 246 EKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKK 279 (551)
Q Consensus 246 ~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~ 279 (551)
.+|+|||+|..|+-+|..|++.|.+|+++++.+.
T Consensus 5 ~dvvIIG~G~~Gl~~A~~La~~G~~V~vlE~~~~ 38 (369)
T 3dme_A 5 IDCIVIGAGVVGLAIARALAAGGHEVLVAEAAEG 38 (369)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCC
Confidence 3799999999999999999999999999999753
|
| >3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A* | Back alignment and structure |
|---|
Probab=91.44 E-value=0.16 Score=51.72 Aligned_cols=34 Identities=21% Similarity=0.381 Sum_probs=31.3
Q ss_pred eEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCcc
Q 008860 247 KIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKV 280 (551)
Q Consensus 247 ~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~ 280 (551)
+|+|||+|..|+-+|..|++.|.+|+++++.+.+
T Consensus 3 dVvVIGaG~aGl~aA~~L~~~G~~V~vlE~~~~~ 36 (431)
T 3k7m_X 3 DAIVVGGGFSGLKAARDLTNAGKKVLLLEGGERL 36 (431)
T ss_dssp EEEEECCBHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred CEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCc
Confidence 6899999999999999999999999999986643
|
| >3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium} | Back alignment and structure |
|---|
Probab=91.37 E-value=0.17 Score=46.38 Aligned_cols=31 Identities=16% Similarity=0.276 Sum_probs=29.4
Q ss_pred CccEEEECCChHHHHHHHHHHhCCCcEEEEc
Q 008860 72 DFDLFTIGAGSGGVRASRFAANFGASVAICE 102 (551)
Q Consensus 72 ~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE 102 (551)
...|+|||||..|...+..|.+.|.+|+||+
T Consensus 31 gk~VLVVGgG~va~~ka~~Ll~~GA~VtVva 61 (223)
T 3dfz_A 31 GRSVLVVGGGTIATRRIKGFLQEGAAITVVA 61 (223)
T ss_dssp TCCEEEECCSHHHHHHHHHHGGGCCCEEEEC
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEC
Confidence 4679999999999999999999999999998
|
| >3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=91.33 E-value=0.16 Score=51.74 Aligned_cols=35 Identities=17% Similarity=0.153 Sum_probs=32.2
Q ss_pred CeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCcc
Q 008860 246 EKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKV 280 (551)
Q Consensus 246 ~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~ 280 (551)
.+|+|||+|+.|+.+|..|++.|.+|+++++.+.+
T Consensus 28 ~dViIIGgG~AGl~aA~~La~~G~~V~llEk~~~~ 62 (417)
T 3v76_A 28 QDVVIIGAGAAGMMCAIEAGKRGRRVLVIDHARAP 62 (417)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCC
Confidence 57999999999999999999999999999987753
|
| >2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A* | Back alignment and structure |
|---|
Probab=91.33 E-value=0.21 Score=51.86 Aligned_cols=36 Identities=19% Similarity=0.223 Sum_probs=33.0
Q ss_pred CCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCcc
Q 008860 245 PEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKV 280 (551)
Q Consensus 245 ~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~ 280 (551)
..+|+|||+|..|+-+|..|++.|.+|+++++.+++
T Consensus 11 ~~~v~IIGaG~aGl~aA~~L~~~g~~v~v~E~~~~~ 46 (489)
T 2jae_A 11 SHSVVVLGGGPAGLCSAFELQKAGYKVTVLEARTRP 46 (489)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEEeccCCC
Confidence 468999999999999999999999999999987654
|
| >2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP} | Back alignment and structure |
|---|
Probab=91.20 E-value=0.21 Score=49.90 Aligned_cols=35 Identities=23% Similarity=0.471 Sum_probs=32.5
Q ss_pred CCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeec-Cc
Q 008860 245 PEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQ-KK 279 (551)
Q Consensus 245 ~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~-~~ 279 (551)
+.+|+|||+|..|+-+|..|.+.|.+|+++++. +.
T Consensus 44 ~~~V~IIGAGiaGL~aA~~L~~~G~~V~VlE~~~~~ 79 (376)
T 2e1m_A 44 PKRILIVGAGIAGLVAGDLLTRAGHDVTILEANANR 79 (376)
T ss_dssp CCEEEEECCBHHHHHHHHHHHHTSCEEEEECSCSSC
T ss_pred CceEEEECCCHHHHHHHHHHHHCCCcEEEEeccccc
Confidence 568999999999999999999999999999988 54
|
| >2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A* | Back alignment and structure |
|---|
Probab=91.18 E-value=0.18 Score=50.63 Aligned_cols=33 Identities=27% Similarity=0.335 Sum_probs=30.9
Q ss_pred eEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCc
Q 008860 247 KIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKK 279 (551)
Q Consensus 247 ~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~ 279 (551)
.|+|||+|..|+-+|..|++.|.+|+++++.+.
T Consensus 6 DVvIIGaG~~Gl~~A~~La~~G~~V~vlE~~~~ 38 (397)
T 2oln_A 6 DVVVVGGGPVGLATAWQVAERGHRVLVLERHTF 38 (397)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEEESSCT
T ss_pred CEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 699999999999999999999999999998754
|
| >1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A* | Back alignment and structure |
|---|
Probab=91.07 E-value=0.18 Score=50.34 Aligned_cols=33 Identities=18% Similarity=0.295 Sum_probs=30.9
Q ss_pred CeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecC
Q 008860 246 EKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQK 278 (551)
Q Consensus 246 ~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~ 278 (551)
.+|+|||+|..|+.+|..|++.|.+|+++++.+
T Consensus 18 ~dvvIIGgG~~Gl~~A~~La~~G~~V~llE~~~ 50 (382)
T 1ryi_A 18 YEAVVIGGGIIGSAIAYYLAKENKNTALFESGT 50 (382)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred CCEEEECcCHHHHHHHHHHHhCCCcEEEEeCCC
Confidence 479999999999999999999999999999864
|
| >3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=90.97 E-value=0.17 Score=46.27 Aligned_cols=29 Identities=17% Similarity=0.151 Sum_probs=28.2
Q ss_pred cEEEECCChHHHHHHHHHHhCCCcEEEEc
Q 008860 74 DLFTIGAGSGGVRASRFAANFGASVAICE 102 (551)
Q Consensus 74 dVvIIGgG~aGl~aA~~l~~~G~~V~liE 102 (551)
+|+|||+|..|...|..|.+.|++|+++|
T Consensus 2 ~iiIiG~G~~G~~la~~L~~~g~~v~vid 30 (218)
T 3l4b_C 2 KVIIIGGETTAYYLARSMLSRKYGVVIIN 30 (218)
T ss_dssp CEEEECCHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCHHHHHHHHHHHhCCCeEEEEE
Confidence 69999999999999999999999999999
|
| >2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A* | Back alignment and structure |
|---|
Probab=90.84 E-value=0.22 Score=50.58 Aligned_cols=60 Identities=20% Similarity=0.250 Sum_probs=44.5
Q ss_pred CCeEEEEcCcHHHHHHHHHHHhCC-CeEEEEeecCccCCC----------CC------HHHHHHHHHHHHhcCcEEE
Q 008860 245 PEKIAIVGGGYIALEFAGIFSGLT-SEVHVFIRQKKVLRG----------FD------EDIRDFVAEQMSLRGIEFH 304 (551)
Q Consensus 245 ~~~vvViG~G~~g~e~a~~l~~~g-~~Vtlv~~~~~~l~~----------~~------~~~~~~l~~~l~~~Gv~i~ 304 (551)
..+|+|||+|..|+-+|..|++.| .+|+++++.+++... ++ ......+.+.+++.|+++.
T Consensus 6 ~~~v~IIGaG~aGl~aA~~L~~~g~~~v~v~E~~~~~GG~~~t~~~~G~~~d~G~~~~~~~~~~~~~l~~~~g~~~~ 82 (424)
T 2b9w_A 6 DSRIAIIGAGPAGLAAGMYLEQAGFHDYTILERTDHVGGKCHSPNYHGRRYEMGAIMGVPSYDTIQEIMDRTGDKVD 82 (424)
T ss_dssp TCCEEEECCSHHHHHHHHHHHHTTCCCEEEECSSSCSSTTCCCCEETTEECCSSCCCBCTTCHHHHHHHHHHCCCCC
T ss_pred CCCEEEECcCHHHHHHHHHHHhCCCCcEEEEECCCCCCCcccccCCCCcccccCceeecCCcHHHHHHHHHhCCccc
Confidence 468999999999999999999999 899999987764210 00 0112456677888887654
|
| >2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase, complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas testosteroni} PDB: 2dki_A* | Back alignment and structure |
|---|
Probab=90.83 E-value=0.2 Score=54.12 Aligned_cols=35 Identities=17% Similarity=0.221 Sum_probs=32.1
Q ss_pred CeEEEEcCcHHHHHHHHHHHh-CCCeEEEEeecCcc
Q 008860 246 EKIAIVGGGYIALEFAGIFSG-LTSEVHVFIRQKKV 280 (551)
Q Consensus 246 ~~vvViG~G~~g~e~a~~l~~-~g~~Vtlv~~~~~~ 280 (551)
..|+|||+|+.|+-+|..|++ .|.+|+++++.+..
T Consensus 33 ~dVlIVGaGpaGL~~A~~La~~~G~~V~viEr~~~~ 68 (639)
T 2dkh_A 33 VDVLIVGCGPAGLTLAAQLAAFPDIRTCIVEQKEGP 68 (639)
T ss_dssp EEEEEECCSHHHHHHHHHHTTCTTSCEEEECSSSSC
T ss_pred CcEEEECcCHHHHHHHHHHHHhCCCCEEEEeCCCCC
Confidence 379999999999999999999 99999999988754
|
| >1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1 | Back alignment and structure |
|---|
Probab=90.83 E-value=0.15 Score=48.44 Aligned_cols=31 Identities=19% Similarity=0.294 Sum_probs=29.4
Q ss_pred CccEEEECCChHHHHHHHHHHhCCCcEEEEc
Q 008860 72 DFDLFTIGAGSGGVRASRFAANFGASVAICE 102 (551)
Q Consensus 72 ~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE 102 (551)
...|+|||||-.|...+..|.+.|.+|+||+
T Consensus 13 ~k~VLVVGgG~va~rka~~Ll~~Ga~VtVia 43 (274)
T 1kyq_A 13 DKRILLIGGGEVGLTRLYKLMPTGCKLTLVS 43 (274)
T ss_dssp TCEEEEEEESHHHHHHHHHHGGGTCEEEEEE
T ss_pred CCEEEEECCcHHHHHHHHHHHhCCCEEEEEc
Confidence 3579999999999999999999999999999
|
| >2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis, biosynthetic protein, flavoprotein; HET: TRP; 2.08A {Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A* 2oal_A* 2oam_A | Back alignment and structure |
|---|
Probab=90.81 E-value=0.19 Score=53.16 Aligned_cols=34 Identities=26% Similarity=0.352 Sum_probs=31.4
Q ss_pred CCeEEEEcCcHHHHHHHHHHHh---CCCeEEEEeecC
Q 008860 245 PEKIAIVGGGYIALEFAGIFSG---LTSEVHVFIRQK 278 (551)
Q Consensus 245 ~~~vvViG~G~~g~e~a~~l~~---~g~~Vtlv~~~~ 278 (551)
..+|+|||+|..|+-+|..|++ .|.+|+++++.+
T Consensus 25 ~~dVvIVGgG~aGl~aA~~La~~~~~G~~V~liE~~~ 61 (550)
T 2e4g_A 25 IDKILIVGGGTAGWMAASYLGKALQGTADITLLQAPD 61 (550)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHTTTSSEEEEEECCC
T ss_pred CCcEEEECCCHHHHHHHHHHHhhcCCCCcEEEEeCCC
Confidence 4689999999999999999999 999999999864
|
| >2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli} | Back alignment and structure |
|---|
Probab=90.80 E-value=0.15 Score=50.65 Aligned_cols=33 Identities=12% Similarity=0.079 Sum_probs=30.7
Q ss_pred eEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCc
Q 008860 247 KIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKK 279 (551)
Q Consensus 247 ~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~ 279 (551)
+|+|||+|.+|+.+|..|++.|.+|+++++.+.
T Consensus 4 dvvIIG~Gi~Gl~~A~~La~~G~~V~vle~~~~ 36 (372)
T 2uzz_A 4 DLIIIGSGSVGAAAGYYATRAGLNVLMTDAHMP 36 (372)
T ss_dssp EEEESCTTHHHHHHHHHHHHTTCCEEEECSSCS
T ss_pred CEEEECCCHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 699999999999999999999999999998753
|
| >1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A* | Back alignment and structure |
|---|
Probab=90.79 E-value=0.21 Score=48.73 Aligned_cols=31 Identities=13% Similarity=0.216 Sum_probs=29.1
Q ss_pred CccEEEECCChHHHHHHHHHHhCCC-cEEEEc
Q 008860 72 DFDLFTIGAGSGGVRASRFAANFGA-SVAICE 102 (551)
Q Consensus 72 ~~dVvIIGgG~aGl~aA~~l~~~G~-~V~liE 102 (551)
..+|+|||+|..|...|..|+..|+ +|+|+|
T Consensus 4 ~~kI~VIGaG~vG~~ia~~la~~g~~~v~L~D 35 (322)
T 1t2d_A 4 KAKIVLVGSGMIGGVMATLIVQKNLGDVVLFD 35 (322)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEe
Confidence 4689999999999999999999998 999999
|
| >3g5s_A Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase TRMFO; tRNA methyltransferase FAD folate, FAD, flavoprotein; HET: MSE FAD GSH; 1.05A {Thermus thermophilus} PDB: 3g5q_A* 3g5r_A* | Back alignment and structure |
|---|
Probab=90.79 E-value=0.21 Score=49.97 Aligned_cols=33 Identities=27% Similarity=0.361 Sum_probs=30.6
Q ss_pred CeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecC
Q 008860 246 EKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQK 278 (551)
Q Consensus 246 ~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~ 278 (551)
++|+|||+|..|+++|..+++.|.+|.++++.+
T Consensus 2 ~dViVIGgG~AG~~AA~~la~~G~~V~liE~~~ 34 (443)
T 3g5s_A 2 ERVNVVGAGLAGSEAAWTLLRLGVPVRLFEMRP 34 (443)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCCEEEECCTT
T ss_pred CCEEEECchHHHHHHHHHHHHCCCcEEEEeccC
Confidence 469999999999999999999999999999765
|
| >2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A | Back alignment and structure |
|---|
Probab=90.76 E-value=0.18 Score=49.21 Aligned_cols=34 Identities=15% Similarity=0.131 Sum_probs=30.4
Q ss_pred CCCCccEEEECCChHHHHHHHHHHhCCC-cEEEEc
Q 008860 69 SHYDFDLFTIGAGSGGVRASRFAANFGA-SVAICE 102 (551)
Q Consensus 69 ~~~~~dVvIIGgG~aGl~aA~~l~~~G~-~V~liE 102 (551)
|.+..+|.|||+|..|.+.|..|++.|+ +|+++|
T Consensus 1 M~~~~kI~VIGaG~~G~~ia~~la~~g~~~V~l~D 35 (317)
T 2ewd_A 1 MIERRKIAVIGSGQIGGNIAYIVGKDNLADVVLFD 35 (317)
T ss_dssp CCCCCEEEEECCSHHHHHHHHHHHHHTCCEEEEEC
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHhCCCceEEEEe
Confidence 3445689999999999999999999998 999999
|
| >1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A* | Back alignment and structure |
|---|
Probab=90.74 E-value=0.23 Score=49.21 Aligned_cols=32 Identities=28% Similarity=0.510 Sum_probs=30.2
Q ss_pred CeEEEEcCcHHHHHHHHHHHhCCCeEEEEeec
Q 008860 246 EKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQ 277 (551)
Q Consensus 246 ~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~ 277 (551)
.+|+|||+|.+|+-+|..|++.|.+|+++++.
T Consensus 7 ~dVvVIG~Gi~Gls~A~~La~~G~~V~vle~~ 38 (363)
T 1c0p_A 7 KRVVVLGSGVIGLSSALILARKGYSVHILARD 38 (363)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCEEEEEecc
Confidence 57999999999999999999999999999975
|
| >2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A* | Back alignment and structure |
|---|
Probab=90.72 E-value=0.2 Score=50.08 Aligned_cols=34 Identities=9% Similarity=0.078 Sum_probs=31.1
Q ss_pred CeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCc
Q 008860 246 EKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKK 279 (551)
Q Consensus 246 ~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~ 279 (551)
.+|+|||+|..|+-+|..|++.|.+|+++++.+.
T Consensus 4 ~dvvIIGaG~~Gl~~A~~La~~G~~V~vie~~~~ 37 (389)
T 2gf3_A 4 FDVIVVGAGSMGMAAGYQLAKQGVKTLLVDAFDP 37 (389)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCS
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCC
Confidence 3799999999999999999999999999998653
|
| >2bs2_A Quinol-fumarate reductase flavoprotein subunit A; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 2bs3_A* 1e7p_A* 2bs4_A* 1qlb_A* | Back alignment and structure |
|---|
Probab=90.69 E-value=0.2 Score=54.09 Aligned_cols=32 Identities=31% Similarity=0.416 Sum_probs=30.7
Q ss_pred CccEEEECCChHHHHHHHHHHhCCCcEEEEcc
Q 008860 72 DFDLFTIGAGSGGVRASRFAANFGASVAICEL 103 (551)
Q Consensus 72 ~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~ 103 (551)
++||||||||.||++||+.|++.|.+|+||||
T Consensus 5 ~~DVvVIGgG~AGL~AAl~aae~G~~V~vlEK 36 (660)
T 2bs2_A 5 YCDSLVIGGGLAGLRAAVATQQKGLSTIVLSL 36 (660)
T ss_dssp ECSEEEECCSHHHHHHHHHHHTTTCCEEEECS
T ss_pred cccEEEECchHHHHHHHHHHHHCCCcEEEEec
Confidence 58999999999999999999999999999995
|
| >3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=90.63 E-value=0.21 Score=44.24 Aligned_cols=30 Identities=20% Similarity=0.104 Sum_probs=28.7
Q ss_pred ccEEEECCChHHHHHHHHHHhC-CCcEEEEc
Q 008860 73 FDLFTIGAGSGGVRASRFAANF-GASVAICE 102 (551)
Q Consensus 73 ~dVvIIGgG~aGl~aA~~l~~~-G~~V~liE 102 (551)
.+|+|||+|..|...|..|.+. |++|+++|
T Consensus 40 ~~v~IiG~G~~G~~~a~~L~~~~g~~V~vid 70 (183)
T 3c85_A 40 AQVLILGMGRIGTGAYDELRARYGKISLGIE 70 (183)
T ss_dssp CSEEEECCSHHHHHHHHHHHHHHCSCEEEEE
T ss_pred CcEEEECCCHHHHHHHHHHHhccCCeEEEEE
Confidence 4799999999999999999998 99999999
|
| >3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=90.61 E-value=0.2 Score=49.23 Aligned_cols=34 Identities=18% Similarity=0.233 Sum_probs=30.8
Q ss_pred CeEEEEcCcHHHHHHHHHHHh---CCCeEEEEeecCc
Q 008860 246 EKIAIVGGGYIALEFAGIFSG---LTSEVHVFIRQKK 279 (551)
Q Consensus 246 ~~vvViG~G~~g~e~a~~l~~---~g~~Vtlv~~~~~ 279 (551)
.+|+|||+|..|+-+|..|++ .|.+|+++++.+.
T Consensus 2 ~dV~IIGaG~aGl~~A~~L~~~~~~G~~V~v~Ek~~~ 38 (342)
T 3qj4_A 2 AQVLIVGAGMTGSLCAALLRRQTSGPLYLAVWDKADD 38 (342)
T ss_dssp EEEEEECCSHHHHHHHHHHHSCC-CCEEEEEECSSSS
T ss_pred CcEEEECCcHHHHHHHHHHHhhccCCceEEEEECCCC
Confidence 369999999999999999999 8999999998753
|
| >3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A* | Back alignment and structure |
|---|
Probab=90.40 E-value=0.22 Score=48.42 Aligned_cols=30 Identities=23% Similarity=0.277 Sum_probs=28.8
Q ss_pred ccEEEECCChHHHHHHHHHHhCCCcEEEEc
Q 008860 73 FDLFTIGAGSGGVRASRFAANFGASVAICE 102 (551)
Q Consensus 73 ~dVvIIGgG~aGl~aA~~l~~~G~~V~liE 102 (551)
-+|.|||+|.-|..-|..++..|++|+|+|
T Consensus 7 ~~VaViGaG~MG~giA~~~a~~G~~V~l~D 36 (319)
T 3ado_A 7 GDVLIVGSGLVGRSWAMLFASGGFRVKLYD 36 (319)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCEEEEC
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCeEEEEE
Confidence 469999999999999999999999999999
|
| >1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A {Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A* 3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A* 3cnt_B* 1yy5_A* 1xpq_A* | Back alignment and structure |
|---|
Probab=90.37 E-value=0.22 Score=52.22 Aligned_cols=34 Identities=21% Similarity=0.355 Sum_probs=31.3
Q ss_pred CeEEEEcCcHHHHHHHHHHHhCC-CeEEEEeecCc
Q 008860 246 EKIAIVGGGYIALEFAGIFSGLT-SEVHVFIRQKK 279 (551)
Q Consensus 246 ~~vvViG~G~~g~e~a~~l~~~g-~~Vtlv~~~~~ 279 (551)
.+|+|||+|..|+-+|..|.+.| .+|+++++.++
T Consensus 9 ~~VvIIGaG~aGL~AA~~L~~~G~~~V~VlEa~~r 43 (516)
T 1rsg_A 9 KKVIIIGAGIAGLKAASTLHQNGIQDCLVLEARDR 43 (516)
T ss_dssp EEEEEECCBHHHHHHHHHHHHTTCCSEEEECSSSS
T ss_pred CcEEEECCCHHHHHHHHHHHhcCCCCEEEEeCCCC
Confidence 57999999999999999999999 99999997664
|
| >1vg0_A RAB proteins geranylgeranyltransferase component A 1; RAB prenylation, post-translational modification, protein binding/protein transport complex; HET: GER GDP PG4; 2.20A {Rattus norvegicus} SCOP: c.3.1.3 d.16.1.6 PDB: 1vg9_A* 1ltx_R* | Back alignment and structure |
|---|
Probab=90.32 E-value=0.73 Score=49.27 Aligned_cols=44 Identities=23% Similarity=0.268 Sum_probs=39.4
Q ss_pred CCCCccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCeec
Q 008860 69 SHYDFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCV 121 (551)
Q Consensus 69 ~~~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~~ 121 (551)
|.++|||+|||+|..|...|..|++.|.+|++||+ +...||.|.
T Consensus 5 ~~~~~D~~i~GtGl~~~~~a~~~~~~g~~vl~id~---------~~~~gg~~~ 48 (650)
T 1vg0_A 5 LPSDFDVIVIGTGLPESIIAAACSRSGQRVLHVDS---------RSYYGGNWA 48 (650)
T ss_dssp CCSBCSEEEECCSHHHHHHHHHHHHTTCCEEEECS---------SSSSCGGGC
T ss_pred CCCcCCEEEECCcHHHHHHHHHHHhCCCEEEEEcC---------CCcccCccc
Confidence 44479999999999999999999999999999994 778888774
|
| >4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=90.30 E-value=0.22 Score=49.99 Aligned_cols=30 Identities=33% Similarity=0.571 Sum_probs=28.9
Q ss_pred ccEEEECCChHHHHHHHHHHhCCCcEEEEc
Q 008860 73 FDLFTIGAGSGGVRASRFAANFGASVAICE 102 (551)
Q Consensus 73 ~dVvIIGgG~aGl~aA~~l~~~G~~V~liE 102 (551)
.+|+|||+|.+|+.+|..|...|.+|+++|
T Consensus 191 ~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D 220 (405)
T 4dio_A 191 AKIFVMGAGVAGLQAIATARRLGAVVSATD 220 (405)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEC
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCEEEEEc
Confidence 579999999999999999999999999999
|
| >2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protei; HET: TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A* 2wes_A* | Back alignment and structure |
|---|
Probab=90.27 E-value=0.14 Score=53.64 Aligned_cols=33 Identities=21% Similarity=0.275 Sum_probs=29.6
Q ss_pred CeEEEEcCcHHHHHHHHHHHh---CCCeEEEEeecC
Q 008860 246 EKIAIVGGGYIALEFAGIFSG---LTSEVHVFIRQK 278 (551)
Q Consensus 246 ~~vvViG~G~~g~e~a~~l~~---~g~~Vtlv~~~~ 278 (551)
.+|+|||||..|+-+|..|++ .|.+|+++++.+
T Consensus 3 ~dVvIVGgG~aGl~~A~~La~~~~~G~~V~lvE~~~ 38 (511)
T 2weu_A 3 RSVVIVGGGTAGWMTASYLKAAFDDRIDVTLVESGN 38 (511)
T ss_dssp CEEEEECCHHHHHHHHHHHHHHHGGGSEEEEEEC--
T ss_pred ceEEEECCCHHHHHHHHHHHhhcCCCCEEEEEecCC
Confidence 579999999999999999999 999999999865
|
| >2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A* | Back alignment and structure |
|---|
Probab=90.19 E-value=0.17 Score=51.96 Aligned_cols=30 Identities=20% Similarity=0.347 Sum_probs=28.8
Q ss_pred ccEEEECCChHHHHHHHHHHhCCCcEEEEc
Q 008860 73 FDLFTIGAGSGGVRASRFAANFGASVAICE 102 (551)
Q Consensus 73 ~dVvIIGgG~aGl~aA~~l~~~G~~V~liE 102 (551)
.+|+|||.|.+|+++|..|+++|++|+++|
T Consensus 6 ~~v~viG~G~~G~~~a~~l~~~G~~v~~~D 35 (439)
T 2x5o_A 6 KNVVIIGLGLTGLSCVDFFLARGVTPRVMD 35 (439)
T ss_dssp CCEEEECCHHHHHHHHHHHHTTTCCCEEEE
T ss_pred CEEEEEeecHHHHHHHHHHHhCCCEEEEEE
Confidence 479999999999999999999999999999
|
| >1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase, oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays} SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A* 1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A* | Back alignment and structure |
|---|
Probab=90.19 E-value=0.3 Score=50.38 Aligned_cols=41 Identities=27% Similarity=0.445 Sum_probs=34.7
Q ss_pred CCccEEEECCChHHHHHHHHHHhCCC-cEEEEccCCCCCCCCCCCCCCCee
Q 008860 71 YDFDLFTIGAGSGGVRASRFAANFGA-SVAICELPFSTISSETTGGVGGTC 120 (551)
Q Consensus 71 ~~~dVvIIGgG~aGl~aA~~l~~~G~-~V~liE~~~~~~~~~~~~~~GG~~ 120 (551)
..+||+|||||++|+++|..|++.|+ +|+|+|+ ...+||.|
T Consensus 3 ~~~~~~iiG~G~~g~~~a~~l~~~g~~~v~~~e~---------~~~~gg~~ 44 (472)
T 1b37_A 3 VGPRVIVVGAGMSGISAAKRLSEAGITDLLILEA---------TDHIGGRM 44 (472)
T ss_dssp --CCEEEECCBHHHHHHHHHHHHTTCCCEEEECS---------SSSSBTTS
T ss_pred CCCeEEEECCCHHHHHHHHHHHhcCCCceEEEeC---------CCCCCCce
Confidence 35899999999999999999999998 8999993 45577765
|
| >1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=90.18 E-value=0.22 Score=49.72 Aligned_cols=33 Identities=24% Similarity=0.441 Sum_probs=30.8
Q ss_pred CeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecC
Q 008860 246 EKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQK 278 (551)
Q Consensus 246 ~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~ 278 (551)
.+|+|||+|.+|+.+|..|++.|.+|+++++..
T Consensus 6 ~dVvIIGgGi~Gl~~A~~La~~G~~V~lle~~~ 38 (382)
T 1y56_B 6 SEIVVIGGGIVGVTIAHELAKRGEEVTVIEKRF 38 (382)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 479999999999999999999999999999864
|
| >1pn0_A Phenol 2-monooxygenase; two dimers, TLS refinement, oxidoreductase; HET: FAD; 1.70A {Trichosporon cutaneum} SCOP: c.3.1.2 c.47.1.10 d.16.1.2 PDB: 1foh_A* | Back alignment and structure |
|---|
Probab=90.17 E-value=0.25 Score=53.48 Aligned_cols=34 Identities=24% Similarity=0.310 Sum_probs=31.3
Q ss_pred eEEEEcCcHHHHHHHHHHHh-----CCCeEEEEeecCcc
Q 008860 247 KIAIVGGGYIALEFAGIFSG-----LTSEVHVFIRQKKV 280 (551)
Q Consensus 247 ~vvViG~G~~g~e~a~~l~~-----~g~~Vtlv~~~~~~ 280 (551)
.|+|||+|+.|+-+|..|++ .|.+|+++++.+..
T Consensus 10 dVlIVGaGpaGL~lA~~La~~~~~~~Gi~v~viE~~~~~ 48 (665)
T 1pn0_A 10 DVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRSTK 48 (665)
T ss_dssp EEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSSSC
T ss_pred cEEEECcCHHHHHHHHHHhccccccCCCCEEEEeCCCCC
Confidence 69999999999999999999 99999999987653
|
| >1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ... | Back alignment and structure |
|---|
Probab=89.91 E-value=0.24 Score=51.84 Aligned_cols=59 Identities=17% Similarity=0.207 Sum_probs=45.0
Q ss_pred CeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCCC------------------CCHHHHHHHHHHHHhcCcEEEc
Q 008860 246 EKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRG------------------FDEDIRDFVAEQMSLRGIEFHT 305 (551)
Q Consensus 246 ~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~~------------------~~~~~~~~l~~~l~~~Gv~i~~ 305 (551)
.+|+|||+|..|+-+|..|++.|.+|+++++.+++... +... ...+.+.+++.|++...
T Consensus 5 ~~vvIIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~GGr~~t~~~~~g~~~d~G~~~~~~~-~~~~~~l~~~lgl~~~~ 81 (520)
T 1s3e_A 5 CDVVVVGGGISGMAAAKLLHDSGLNVVVLEARDRVGGRTYTLRNQKVKYVDLGGSYVGPT-QNRILRLAKELGLETYK 81 (520)
T ss_dssp CSEEEECCBHHHHHHHHHHHHTTCCEEEECSSSSSBTTCCEECCTTTSCEESSCCEECTT-CHHHHHHHHHTTCCEEE
T ss_pred ceEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCCCceeecccCCCcccccCceEecCC-cHHHHHHHHHcCCccee
Confidence 57999999999999999999999999999987765211 0111 24566778888887643
|
| >3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=89.91 E-value=0.64 Score=38.89 Aligned_cols=32 Identities=6% Similarity=0.107 Sum_probs=29.9
Q ss_pred CeEEEEcCcHHHHHHHHHHHhCCCeEEEEeec
Q 008860 246 EKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQ 277 (551)
Q Consensus 246 ~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~ 277 (551)
++++|+|+|.+|..++..|.+.|.+|+++++.
T Consensus 7 ~~v~I~G~G~iG~~la~~L~~~g~~V~~id~~ 38 (141)
T 3llv_A 7 YEYIVIGSEAAGVGLVRELTAAGKKVLAVDKS 38 (141)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCEEEEESC
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEECC
Confidence 58999999999999999999999999999874
|
| >2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase, lipopolysaccharide biosynthesi; HET: FAD; 2.0A {Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB: 2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A* | Back alignment and structure |
|---|
Probab=89.86 E-value=0.32 Score=48.81 Aligned_cols=35 Identities=23% Similarity=0.431 Sum_probs=32.1
Q ss_pred CeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCcc
Q 008860 246 EKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKV 280 (551)
Q Consensus 246 ~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~ 280 (551)
.+++|||+|..|+.+|..|.+.|.+|+++++.+.+
T Consensus 4 ~~v~iiG~G~~Gl~~A~~l~~~g~~v~v~E~~~~~ 38 (384)
T 2bi7_A 4 KKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHI 38 (384)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSS
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCcEEEEEecCCc
Confidence 47999999999999999999999999999987654
|
| >3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=89.85 E-value=0.24 Score=50.99 Aligned_cols=31 Identities=26% Similarity=0.491 Sum_probs=29.4
Q ss_pred CccEEEECCChHHHHHHHHHHhCCCcEEEEc
Q 008860 72 DFDLFTIGAGSGGVRASRFAANFGASVAICE 102 (551)
Q Consensus 72 ~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE 102 (551)
..+|.|||.|.+|+++|..|+++|++|++.|
T Consensus 9 ~k~v~viG~G~sG~s~A~~l~~~G~~V~~~D 39 (451)
T 3lk7_A 9 NKKVLVLGLARSGEAAARLLAKLGAIVTVND 39 (451)
T ss_dssp TCEEEEECCTTTHHHHHHHHHHTTCEEEEEE
T ss_pred CCEEEEEeeCHHHHHHHHHHHhCCCEEEEEe
Confidence 3579999999999999999999999999999
|
| >1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6 | Back alignment and structure |
|---|
Probab=89.82 E-value=0.26 Score=48.78 Aligned_cols=31 Identities=26% Similarity=0.336 Sum_probs=29.3
Q ss_pred CccEEEECCChHHHHHHHHHHhCCCcEEEEc
Q 008860 72 DFDLFTIGAGSGGVRASRFAANFGASVAICE 102 (551)
Q Consensus 72 ~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE 102 (551)
+.+|.|||+|..|...|..|++.|++|++++
T Consensus 4 ~mki~iiG~G~~G~~~a~~L~~~g~~V~~~~ 34 (359)
T 1bg6_A 4 SKTYAVLGLGNGGHAFAAYLALKGQSVLAWD 34 (359)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEEC
T ss_pred cCeEEEECCCHHHHHHHHHHHhCCCEEEEEe
Confidence 4689999999999999999999999999998
|
| >3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A* | Back alignment and structure |
|---|
Probab=89.56 E-value=0.25 Score=49.07 Aligned_cols=35 Identities=17% Similarity=0.209 Sum_probs=31.2
Q ss_pred CCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCcc
Q 008860 245 PEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKV 280 (551)
Q Consensus 245 ~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~ 280 (551)
.++|+|||+|..|+-+|..|+ .|.+|+++++.+.+
T Consensus 9 ~~dv~IIGaGi~Gls~A~~La-~G~~V~vlE~~~~~ 43 (381)
T 3nyc_A 9 EADYLVIGAGIAGASTGYWLS-AHGRVVVLEREAQP 43 (381)
T ss_dssp ECSEEEECCSHHHHHHHHHHT-TTSCEEEECSSSST
T ss_pred cCCEEEECCcHHHHHHHHHHh-CCCCEEEEECCCCc
Confidence 468999999999999999999 59999999997543
|
| >3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus} | Back alignment and structure |
|---|
Probab=89.49 E-value=0.3 Score=51.10 Aligned_cols=33 Identities=18% Similarity=0.247 Sum_probs=31.1
Q ss_pred CeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecC
Q 008860 246 EKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQK 278 (551)
Q Consensus 246 ~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~ 278 (551)
.+|+|||+|..|+-+|..|++.|.+|+++++.+
T Consensus 8 ~dVvIVGgG~aGl~aA~~La~~G~~V~liE~~~ 40 (512)
T 3e1t_A 8 FDLIVIGGGPGGSTLASFVAMRGHRVLLLEREA 40 (512)
T ss_dssp EEEEEECCSHHHHHHHHHHHTTTCCEEEECSSC
T ss_pred CCEEEECcCHHHHHHHHHHHhCCCCEEEEccCC
Confidence 479999999999999999999999999999986
|
| >2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes} | Back alignment and structure |
|---|
Probab=89.48 E-value=0.25 Score=49.06 Aligned_cols=31 Identities=26% Similarity=0.474 Sum_probs=29.4
Q ss_pred CccEEEECCChHHHHHHHHHHhCCC-cEEEEc
Q 008860 72 DFDLFTIGAGSGGVRASRFAANFGA-SVAICE 102 (551)
Q Consensus 72 ~~dVvIIGgG~aGl~aA~~l~~~G~-~V~liE 102 (551)
+.+|||+|||.||+.+|..|...|. +|+++|
T Consensus 188 d~kVVi~GAGaAG~~iA~ll~~~Ga~~I~v~D 219 (398)
T 2a9f_A 188 EVSIVVNGGGSAGLSITRKLLAAGATKVTVVD 219 (398)
T ss_dssp SCEEEEECCSHHHHHHHHHHHHHTCCEEEEEE
T ss_pred ccEEEEECCCHHHHHHHHHHHHcCCCeEEEEE
Confidence 4689999999999999999999998 999999
|
| >2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A* | Back alignment and structure |
|---|
Probab=89.46 E-value=0.29 Score=50.50 Aligned_cols=36 Identities=19% Similarity=0.338 Sum_probs=32.7
Q ss_pred CCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCcc
Q 008860 245 PEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKV 280 (551)
Q Consensus 245 ~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~ 280 (551)
..+|+|||+|..|+-+|..|++.|.+|+++++.+.+
T Consensus 16 ~~~v~iiG~G~~Gl~aa~~l~~~g~~v~v~E~~~~~ 51 (478)
T 2ivd_A 16 GMNVAVVGGGISGLAVAHHLRSRGTDAVLLESSARL 51 (478)
T ss_dssp -CCEEEECCBHHHHHHHHHHHTTTCCEEEECSSSSS
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCC
Confidence 468999999999999999999999999999998764
|
| >3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=89.41 E-value=0.18 Score=51.91 Aligned_cols=35 Identities=23% Similarity=0.324 Sum_probs=32.3
Q ss_pred CeEEEEcCcHHHHHHHHHHHhCC------CeEEEEeecCcc
Q 008860 246 EKIAIVGGGYIALEFAGIFSGLT------SEVHVFIRQKKV 280 (551)
Q Consensus 246 ~~vvViG~G~~g~e~a~~l~~~g------~~Vtlv~~~~~~ 280 (551)
.+|+|||+|.+|+-+|..|++.| .+|+++++.+++
T Consensus 6 ~dVvIIGaGiaGLsaA~~L~~~G~~~~~~~~V~vlEa~~~~ 46 (470)
T 3i6d_A 6 KHVVIIGGGITGLAAAFYMEKEIKEKNLPLELTLVEASPRV 46 (470)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHHTTTTCSEEEEEECSSSSS
T ss_pred CcEEEECCCHHHHHHHHHHHHhccccCCCCCEEEEECCCCC
Confidence 58999999999999999999999 999999998654
|
| >3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus} | Back alignment and structure |
|---|
Probab=89.29 E-value=0.3 Score=47.65 Aligned_cols=30 Identities=23% Similarity=0.433 Sum_probs=28.9
Q ss_pred ccEEEECCChHHHHHHHHHHhCCCcEEEEc
Q 008860 73 FDLFTIGAGSGGVRASRFAANFGASVAICE 102 (551)
Q Consensus 73 ~dVvIIGgG~aGl~aA~~l~~~G~~V~liE 102 (551)
++|.|||+|.-|.+.|..|++.|.+|++++
T Consensus 3 mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~ 32 (320)
T 3i83_A 3 LNILVIGTGAIGSFYGALLAKTGHCVSVVS 32 (320)
T ss_dssp CEEEEESCCHHHHHHHHHHHHTTCEEEEEC
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEe
Confidence 579999999999999999999999999999
|
| >1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5 | Back alignment and structure |
|---|
Probab=89.20 E-value=0.36 Score=50.23 Aligned_cols=36 Identities=25% Similarity=0.304 Sum_probs=33.2
Q ss_pred CCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCcc
Q 008860 245 PEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKV 280 (551)
Q Consensus 245 ~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~ 280 (551)
..+|+|||+|..|+-+|..|++.|.+|+++++.+.+
T Consensus 13 ~~~v~iiG~G~~Gl~aA~~l~~~g~~v~v~E~~~~~ 48 (504)
T 1sez_A 13 AKRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEGKA 48 (504)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTSCEEEEECSSSSS
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCCC
Confidence 468999999999999999999999999999998765
|
| >3hn7_A UDP-N-acetylmuramate-L-alanine ligase; ATP-binding, nucleotide-binding, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.65A {Psychrobacter arcticus 273-4} | Back alignment and structure |
|---|
Probab=89.09 E-value=0.34 Score=50.86 Aligned_cols=81 Identities=12% Similarity=0.022 Sum_probs=55.1
Q ss_pred cCCCCCCeEEEEcCcHHHHH-HHHHHHhCCCeEEEEeecCccCCCCCHHHHHHHHHHHHhcCcEEEcCcccEEEEEcCCc
Q 008860 240 DLPSKPEKIAIVGGGYIALE-FAGIFSGLTSEVHVFIRQKKVLRGFDEDIRDFVAEQMSLRGIEFHTEESPQAILKSTDG 318 (551)
Q Consensus 240 ~~~~~~~~vvViG~G~~g~e-~a~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~ 318 (551)
++....+++.+||-|-+|+- +|..|.+.|.+|+..+.... + . ..+.|++.|++++.+.....+.
T Consensus 14 ~~~~~~~~i~~iGiGg~Gms~lA~~l~~~G~~V~~sD~~~~-----~-~----~~~~L~~~gi~~~~G~~~~~~~----- 78 (524)
T 3hn7_A 14 NLYFQGMHIHILGICGTFMGSLALLARALGHTVTGSDANIY-----P-P----MSTQLEQAGVTIEEGYLIAHLQ----- 78 (524)
T ss_dssp -----CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCC-----T-T----HHHHHHHTTCEEEESCCGGGGC-----
T ss_pred ceeecCCEEEEEEecHhhHHHHHHHHHhCCCEEEEECCCCC-----c-H----HHHHHHHCCCEEECCCCHHHcC-----
Confidence 34445689999999999997 68899999999999887542 1 1 2456778899998763321110
Q ss_pred eEEEEECCCeEEEeeEEEEecCcCCCCC
Q 008860 319 SLSVKTNKGTVDGFSHVMFATGRRPNTK 346 (551)
Q Consensus 319 ~~~V~~~~G~~i~~d~vi~a~G~~p~~~ 346 (551)
-.+|.||+..|..+...
T Consensus 79 -----------~~~d~vV~Spgi~~~~p 95 (524)
T 3hn7_A 79 -----------PAPDLVVVGNAMKRGMD 95 (524)
T ss_dssp -----------SCCSEEEECTTCCTTSH
T ss_pred -----------CCCCEEEECCCcCCCCH
Confidence 13688888888876554
|
| >2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A* | Back alignment and structure |
|---|
Probab=89.02 E-value=0.33 Score=49.69 Aligned_cols=59 Identities=20% Similarity=0.213 Sum_probs=44.7
Q ss_pred CeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCCC-----------------CCHHHHHHHHHHHHhcCcEEEc
Q 008860 246 EKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRG-----------------FDEDIRDFVAEQMSLRGIEFHT 305 (551)
Q Consensus 246 ~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~~-----------------~~~~~~~~l~~~l~~~Gv~i~~ 305 (551)
.+|+|||+|..|+-+|..|++.|.+|+++++.+.+... +... ...+.+.+++.|++...
T Consensus 6 ~~v~iiG~G~~Gl~aA~~l~~~g~~v~v~E~~~~~GG~~~~~~~~g~~~~~g~~~~~~~-~~~~~~~~~~~g~~~~~ 81 (453)
T 2yg5_A 6 RDVAIVGAGPSGLAAATALRKAGLSVAVIEARDRVGGRTWTDTIDGAVLEIGGQWVSPD-QTALISLLDELGLKTFE 81 (453)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTTCCEEEETTEEEECSCCCBCTT-CHHHHHHHHHTTCCEEE
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCcEEEEECCCCCCCceeccccCCceeccCCeEecCc-cHHHHHHHHHcCCcccc
Confidence 47999999999999999999999999999987654211 1111 34566778888887643
|
| >3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=88.93 E-value=0.32 Score=47.27 Aligned_cols=30 Identities=20% Similarity=0.287 Sum_probs=28.3
Q ss_pred ccEEEECCChHHHHHHHHHHhCCCcEEEEc
Q 008860 73 FDLFTIGAGSGGVRASRFAANFGASVAICE 102 (551)
Q Consensus 73 ~dVvIIGgG~aGl~aA~~l~~~G~~V~liE 102 (551)
++|.|||+|.-|.+.|..|++.|.+|++++
T Consensus 3 mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~ 32 (312)
T 3hn2_A 3 LRIAIVGAGALGLYYGALLQRSGEDVHFLL 32 (312)
T ss_dssp -CEEEECCSTTHHHHHHHHHHTSCCEEEEC
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCeEEEEE
Confidence 579999999999999999999999999998
|
| >3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A* | Back alignment and structure |
|---|
Probab=88.90 E-value=0.33 Score=49.42 Aligned_cols=34 Identities=21% Similarity=0.099 Sum_probs=31.5
Q ss_pred CeEEEEcCcHHHHHHHHHHHhCCC-eEEEEeecCc
Q 008860 246 EKIAIVGGGYIALEFAGIFSGLTS-EVHVFIRQKK 279 (551)
Q Consensus 246 ~~vvViG~G~~g~e~a~~l~~~g~-~Vtlv~~~~~ 279 (551)
.+|+|||+|..|+-+|..|++.|. +|+++++.+.
T Consensus 7 ~dVvIIGgG~aGlsaA~~La~~G~~~V~vlE~~~~ 41 (438)
T 3dje_A 7 SSLLIVGAGTWGTSTALHLARRGYTNVTVLDPYPV 41 (438)
T ss_dssp SCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSCS
T ss_pred CCEEEECCCHHHHHHHHHHHHcCCCcEEEEeCCCC
Confidence 479999999999999999999999 9999998764
|
| >2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B* 3ada_B* | Back alignment and structure |
|---|
Probab=88.79 E-value=0.28 Score=49.26 Aligned_cols=33 Identities=27% Similarity=0.242 Sum_probs=30.8
Q ss_pred CeEEEEcCcHHHHHHHHHHHh-CC-CeEEEEeecC
Q 008860 246 EKIAIVGGGYIALEFAGIFSG-LT-SEVHVFIRQK 278 (551)
Q Consensus 246 ~~vvViG~G~~g~e~a~~l~~-~g-~~Vtlv~~~~ 278 (551)
.+|+|||+|..|+.+|..|++ .| .+|+++++.+
T Consensus 22 ~dVvIIG~G~~Gl~~A~~La~~~G~~~V~vlE~~~ 56 (405)
T 2gag_B 22 YDAIIVGGGGHGLATAYFLAKNHGITNVAVLEKGW 56 (405)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHHCCCCEEEECSSS
T ss_pred CCEEEECcCHHHHHHHHHHHHhcCCCcEEEEeCCC
Confidence 479999999999999999999 89 9999999876
|
| >3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG, structural genomics, PSI-2, prote structure initiative; HET: FAD; 2.15A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=88.71 E-value=0.27 Score=51.84 Aligned_cols=35 Identities=17% Similarity=0.164 Sum_probs=32.2
Q ss_pred CCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCc
Q 008860 245 PEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKK 279 (551)
Q Consensus 245 ~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~ 279 (551)
..+|+|||+|+.|+.+|..|++.|.+|+++++.+.
T Consensus 107 ~~DVVIVGgGpaGL~aA~~La~~G~kV~VlEr~~~ 141 (549)
T 3nlc_A 107 TERPIVIGFGPCGLFAGLVLAQMGFNPIIVERGKE 141 (549)
T ss_dssp CCCCEEECCSHHHHHHHHHHHHTTCCCEEECSSCC
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCeEEEEEccCc
Confidence 46899999999999999999999999999998754
|
| >4hv4_A UDP-N-acetylmuramate--L-alanine ligase; MURC, yersinia pestis peptidoglycan synthesis; HET: AMP; 2.25A {Yersinia pestis} PDB: 2f00_A | Back alignment and structure |
|---|
Probab=88.66 E-value=0.41 Score=49.82 Aligned_cols=75 Identities=15% Similarity=0.178 Sum_probs=54.9
Q ss_pred CCCeEEEEcCcHHHHH-HHHHHHhCCCeEEEEeecCccCCCCCHHHHHHHHHHHHhcCcEEEcCcccEEEEEcCCceEEE
Q 008860 244 KPEKIAIVGGGYIALE-FAGIFSGLTSEVHVFIRQKKVLRGFDEDIRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSV 322 (551)
Q Consensus 244 ~~~~vvViG~G~~g~e-~a~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V 322 (551)
..+++.|||-|-+|+- +|..|.+.|.+|+..+.... + ..+.|++.|++++.+.....+
T Consensus 21 ~~~~v~viGiG~sG~s~~A~~l~~~G~~V~~~D~~~~------~-----~~~~l~~~gi~~~~g~~~~~~---------- 79 (494)
T 4hv4_A 21 RVRHIHFVGIGGAGMGGIAEVLANEGYQISGSDLAPN------S-----VTQHLTALGAQIYFHHRPENV---------- 79 (494)
T ss_dssp -CCEEEEETTTSTTHHHHHHHHHHTTCEEEEECSSCC------H-----HHHHHHHTTCEEESSCCGGGG----------
T ss_pred cCCEEEEEEEcHhhHHHHHHHHHhCCCeEEEEECCCC------H-----HHHHHHHCCCEEECCCCHHHc----------
Confidence 4589999999999996 89999999999998876431 1 234578889999877332111
Q ss_pred EECCCeEEEeeEEEEecCcCCCCC
Q 008860 323 KTNKGTVDGFSHVMFATGRRPNTK 346 (551)
Q Consensus 323 ~~~~G~~i~~d~vi~a~G~~p~~~ 346 (551)
..+|.||++.|..+...
T Consensus 80 -------~~~d~vV~Spgi~~~~p 96 (494)
T 4hv4_A 80 -------LDASVVVVSTAISADNP 96 (494)
T ss_dssp -------TTCSEEEECTTSCTTCH
T ss_pred -------CCCCEEEECCCCCCCCH
Confidence 12688888888877543
|
| >3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=88.65 E-value=0.58 Score=47.87 Aligned_cols=30 Identities=17% Similarity=0.124 Sum_probs=29.0
Q ss_pred ccEEEECCChHHHHHHHHHHhCCCcEEEEc
Q 008860 73 FDLFTIGAGSGGVRASRFAANFGASVAICE 102 (551)
Q Consensus 73 ~dVvIIGgG~aGl~aA~~l~~~G~~V~liE 102 (551)
.+|.|||+|.-|...|..|++.|++|+++|
T Consensus 55 ~kVaVIGaG~MG~~IA~~la~aG~~V~l~D 84 (460)
T 3k6j_A 55 NSVAIIGGGTMGKAMAICFGLAGIETFLVV 84 (460)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEC
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEE
Confidence 579999999999999999999999999999
|
| >2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=88.64 E-value=0.35 Score=46.73 Aligned_cols=30 Identities=23% Similarity=0.355 Sum_probs=28.8
Q ss_pred ccEEEECCChHHHHHHHHHHhCCCcEEEEc
Q 008860 73 FDLFTIGAGSGGVRASRFAANFGASVAICE 102 (551)
Q Consensus 73 ~dVvIIGgG~aGl~aA~~l~~~G~~V~liE 102 (551)
++|.|||+|..|...|..|++.|++|++++
T Consensus 4 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~ 33 (316)
T 2ew2_A 4 MKIAIAGAGAMGSRLGIMLHQGGNDVTLID 33 (316)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEC
T ss_pred CeEEEECcCHHHHHHHHHHHhCCCcEEEEE
Confidence 579999999999999999999999999999
|
| >3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str} | Back alignment and structure |
|---|
Probab=88.62 E-value=0.28 Score=48.77 Aligned_cols=30 Identities=23% Similarity=0.376 Sum_probs=28.8
Q ss_pred ccEEEECCChHHHHHHHHHHhCCCcEEEEc
Q 008860 73 FDLFTIGAGSGGVRASRFAANFGASVAICE 102 (551)
Q Consensus 73 ~dVvIIGgG~aGl~aA~~l~~~G~~V~liE 102 (551)
.+|+|||+|..|+.+|..|...|.+|+++|
T Consensus 185 ~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D 214 (381)
T 3p2y_A 185 ASALVLGVGVAGLQALATAKRLGAKTTGYD 214 (381)
T ss_dssp CEEEEESCSHHHHHHHHHHHHHTCEEEEEC
T ss_pred CEEEEECchHHHHHHHHHHHHCCCEEEEEe
Confidence 579999999999999999999999999999
|
| >1jnr_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1jnz_A* 2fjb_A* 2fja_A* 2fjd_A* 2fje_A* | Back alignment and structure |
|---|
Probab=88.61 E-value=0.25 Score=53.33 Aligned_cols=32 Identities=34% Similarity=0.442 Sum_probs=30.2
Q ss_pred CccEEEECCChHHHHHHHHHH---h-CCCcEEEEcc
Q 008860 72 DFDLFTIGAGSGGVRASRFAA---N-FGASVAICEL 103 (551)
Q Consensus 72 ~~dVvIIGgG~aGl~aA~~l~---~-~G~~V~liE~ 103 (551)
++||||||||+||++||+.|+ + .|.+|+||||
T Consensus 22 ~~DVvVIG~G~AGl~AAl~aa~~~~~~G~~V~vlEK 57 (643)
T 1jnr_A 22 ETDILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEK 57 (643)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHHHTTTTCCEEEECS
T ss_pred cCCEEEECcCHHHHHHHHHHhhhhhhCCCeEEEEeC
Confidence 589999999999999999999 6 8999999995
|
| >3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase; HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB: 3hdy_A* 3he3_A* 3mj4_A* | Back alignment and structure |
|---|
Probab=88.58 E-value=0.39 Score=48.35 Aligned_cols=35 Identities=20% Similarity=0.277 Sum_probs=32.0
Q ss_pred CeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCcc
Q 008860 246 EKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKV 280 (551)
Q Consensus 246 ~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~ 280 (551)
.+++|||+|..|+-+|..|++.|.+|+++++.+.+
T Consensus 30 ~dv~IIGaG~aGl~aA~~l~~~g~~v~v~E~~~~~ 64 (397)
T 3hdq_A 30 FDYLIVGAGFAGSVLAERLASSGQRVLIVDRRPHI 64 (397)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred CCEEEECccHHHHHHHHHHHHCCCceEEEeccCCC
Confidence 47999999999999999999999999999987654
|
| >3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum} | Back alignment and structure |
|---|
Probab=88.55 E-value=0.41 Score=46.97 Aligned_cols=30 Identities=20% Similarity=0.227 Sum_probs=28.9
Q ss_pred ccEEEECCChHHHHHHHHHHhCCCcEEEEc
Q 008860 73 FDLFTIGAGSGGVRASRFAANFGASVAICE 102 (551)
Q Consensus 73 ~dVvIIGgG~aGl~aA~~l~~~G~~V~liE 102 (551)
.+|.|||+|.-|.+.|..|++.|++|++++
T Consensus 4 mkI~IiGaG~~G~~~a~~L~~~g~~V~~~~ 33 (335)
T 3ghy_A 4 TRICIVGAGAVGGYLGARLALAGEAINVLA 33 (335)
T ss_dssp CCEEEESCCHHHHHHHHHHHHTTCCEEEEC
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCEEEEEE
Confidence 579999999999999999999999999999
|
| >1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T* | Back alignment and structure |
|---|
Probab=88.52 E-value=0.37 Score=46.83 Aligned_cols=30 Identities=30% Similarity=0.348 Sum_probs=28.7
Q ss_pred ccEEEECCChHHHHHHHHHHhCCC--cEEEEc
Q 008860 73 FDLFTIGAGSGGVRASRFAANFGA--SVAICE 102 (551)
Q Consensus 73 ~dVvIIGgG~aGl~aA~~l~~~G~--~V~liE 102 (551)
++|+|||+|..|...|..|++.|+ +|+++|
T Consensus 8 mkI~IiGaG~vG~~~a~~l~~~g~~~~V~l~d 39 (319)
T 1lld_A 8 TKLAVIGAGAVGSTLAFAAAQRGIAREIVLED 39 (319)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCSEEEEEC
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEe
Confidence 579999999999999999999998 999999
|
| >2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1 | Back alignment and structure |
|---|
Probab=88.45 E-value=0.35 Score=49.58 Aligned_cols=34 Identities=21% Similarity=0.179 Sum_probs=31.5
Q ss_pred CeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCc
Q 008860 246 EKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKK 279 (551)
Q Consensus 246 ~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~ 279 (551)
.+|+|||+|..|+.+|..|++.|.+|+++++.+.
T Consensus 27 ~dVvIIGgG~aGl~aA~~la~~G~~V~llEk~~~ 60 (447)
T 2i0z_A 27 YDVIVIGGGPSGLMAAIGAAEEGANVLLLDKGNK 60 (447)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred CCEEEECCcHHHHHHHHHHHHCCCCEEEEECCCC
Confidence 4799999999999999999999999999998764
|
| >3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A* | Back alignment and structure |
|---|
Probab=88.38 E-value=0.42 Score=51.89 Aligned_cols=34 Identities=18% Similarity=0.272 Sum_probs=31.5
Q ss_pred CeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCc
Q 008860 246 EKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKK 279 (551)
Q Consensus 246 ~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~ 279 (551)
.+|+|||+|..|+-+|..|++.|.+|+++++.+.
T Consensus 273 ~DVvIIGgGiaGlsaA~~La~~G~~V~vlEk~~~ 306 (676)
T 3ps9_A 273 REAAIIGGGIASALLSLALLRRGWQVTLYCADEA 306 (676)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSS
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCc
Confidence 6899999999999999999999999999998643
|
| >2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G* | Back alignment and structure |
|---|
Probab=88.19 E-value=0.41 Score=49.68 Aligned_cols=35 Identities=14% Similarity=0.304 Sum_probs=32.6
Q ss_pred CeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCcc
Q 008860 246 EKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKV 280 (551)
Q Consensus 246 ~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~ 280 (551)
.+|+|||+|..|+-+|..|.+.|.+|+++++.+++
T Consensus 40 ~~v~iiGaG~aGl~aA~~l~~~g~~v~v~E~~~~~ 74 (495)
T 2vvm_A 40 WDVIVIGGGYCGLTATRDLTVAGFKTLLLEARDRI 74 (495)
T ss_dssp EEEEEECCBHHHHHHHHHHHHTTCCEEEECSSSBS
T ss_pred CCEEEECCcHHHHHHHHHHHHCCCCEEEEeCCCCC
Confidence 58999999999999999999999999999988765
|
| >3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A* | Back alignment and structure |
|---|
Probab=88.16 E-value=0.42 Score=52.07 Aligned_cols=35 Identities=23% Similarity=0.338 Sum_probs=31.9
Q ss_pred CCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCc
Q 008860 245 PEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKK 279 (551)
Q Consensus 245 ~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~ 279 (551)
..+|+|||+|..|+-+|..|++.|.+|+++++.+.
T Consensus 264 ~~DVvIIGgGiaGlsaA~~La~~G~~V~vlEk~~~ 298 (689)
T 3pvc_A 264 CDDIAIIGGGIVSALTALALQRRGAVVTLYCADAQ 298 (689)
T ss_dssp CSSEEEECCSHHHHHHHHHHHTTTCCEEEEESSSS
T ss_pred CCCEEEECCcHHHHHHHHHHHHCCCcEEEEeCCCc
Confidence 35899999999999999999999999999998643
|
| >3g3e_A D-amino-acid oxidase; FAD, flavoprotein, oxidoreductase, PER; HET: FAD G3E; 2.20A {Homo sapiens} PDB: 3cuk_A* 2e48_A* 2e49_A* 2e4a_A* 2e82_A* 2du8_A* 1ve9_A* 1dao_A* 1ddo_A* 1kif_A* 1an9_A* 1evi_A* | Back alignment and structure |
|---|
Probab=88.08 E-value=0.33 Score=47.84 Aligned_cols=32 Identities=19% Similarity=0.354 Sum_probs=29.7
Q ss_pred eEEEEcCcHHHHHHHHHHHhCC------CeEEEEeecC
Q 008860 247 KIAIVGGGYIALEFAGIFSGLT------SEVHVFIRQK 278 (551)
Q Consensus 247 ~vvViG~G~~g~e~a~~l~~~g------~~Vtlv~~~~ 278 (551)
+|+|||+|.+|+-+|..|++.| .+|+++++..
T Consensus 2 dVvIIGgGi~Gls~A~~La~~G~~~~p~~~V~vlE~~~ 39 (351)
T 3g3e_A 2 RVVVIGAGVIGLSTALCIHERYHSVLQPLDIKVYADRF 39 (351)
T ss_dssp EEEEECCSHHHHHHHHHHHHHHTTTSSSCEEEEEESSC
T ss_pred cEEEECCCHHHHHHHHHHHHhccccCCCceEEEEECCC
Confidence 6899999999999999999998 8999999864
|
| >1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A* | Back alignment and structure |
|---|
Probab=88.04 E-value=0.37 Score=47.26 Aligned_cols=30 Identities=20% Similarity=0.171 Sum_probs=28.6
Q ss_pred ccEEEECCChHHHHHHHHHHhCCC-cEEEEc
Q 008860 73 FDLFTIGAGSGGVRASRFAANFGA-SVAICE 102 (551)
Q Consensus 73 ~dVvIIGgG~aGl~aA~~l~~~G~-~V~liE 102 (551)
.+|+|||+|..|.+.|..|++.|+ +|+|+|
T Consensus 10 ~kI~VIGaG~vG~~lA~~la~~g~~~V~L~D 40 (331)
T 1pzg_A 10 KKVAMIGSGMIGGTMGYLCALRELADVVLYD 40 (331)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCEEEEEC
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCeEEEEE
Confidence 589999999999999999999998 999999
|
| >4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=87.89 E-value=0.23 Score=51.19 Aligned_cols=31 Identities=16% Similarity=0.292 Sum_probs=29.4
Q ss_pred CccEEEECCChHHHHHHHHHHhCCCcEEEEc
Q 008860 72 DFDLFTIGAGSGGVRASRFAANFGASVAICE 102 (551)
Q Consensus 72 ~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE 102 (551)
.++|+|+|+|-.|...|..|.+.|++|++||
T Consensus 3 ~M~iiI~G~G~vG~~la~~L~~~~~~v~vId 33 (461)
T 4g65_A 3 AMKIIILGAGQVGGTLAENLVGENNDITIVD 33 (461)
T ss_dssp CEEEEEECCSHHHHHHHHHTCSTTEEEEEEE
T ss_pred cCEEEEECCCHHHHHHHHHHHHCCCCEEEEE
Confidence 3679999999999999999999999999999
|
| >2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum} | Back alignment and structure |
|---|
Probab=87.83 E-value=0.46 Score=46.48 Aligned_cols=30 Identities=20% Similarity=0.214 Sum_probs=28.6
Q ss_pred ccEEEECCChHHHHHHHHHHhCCC-cEEEEc
Q 008860 73 FDLFTIGAGSGGVRASRFAANFGA-SVAICE 102 (551)
Q Consensus 73 ~dVvIIGgG~aGl~aA~~l~~~G~-~V~liE 102 (551)
.+|.|||+|..|...|..|+..|+ +|+|+|
T Consensus 15 ~kI~ViGaG~vG~~iA~~la~~g~~~V~L~D 45 (328)
T 2hjr_A 15 KKISIIGAGQIGSTIALLLGQKDLGDVYMFD 45 (328)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCeEEEEE
Confidence 479999999999999999999998 999999
|
| >2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A {Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A* | Back alignment and structure |
|---|
Probab=87.75 E-value=0.39 Score=50.07 Aligned_cols=32 Identities=22% Similarity=0.302 Sum_probs=30.3
Q ss_pred eEEEEcCcHHHHHHHHHHHhCCCeEEEEeecC
Q 008860 247 KIAIVGGGYIALEFAGIFSGLTSEVHVFIRQK 278 (551)
Q Consensus 247 ~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~ 278 (551)
.|+|||+|.+|+-+|..|++.|.+|+++++.+
T Consensus 5 DVvIIGgGi~G~~~A~~La~~G~~V~llE~~~ 36 (501)
T 2qcu_A 5 DLIVIGGGINGAGIAADAAGRGLSVLMLEAQD 36 (501)
T ss_dssp SEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred CEEEECcCHHHHHHHHHHHhCCCCEEEEECCC
Confidence 69999999999999999999999999999865
|
| >1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=87.73 E-value=0.66 Score=39.49 Aligned_cols=33 Identities=12% Similarity=0.149 Sum_probs=30.4
Q ss_pred CCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeec
Q 008860 245 PEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQ 277 (551)
Q Consensus 245 ~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~ 277 (551)
.++++|+|+|.+|..++..|.+.|.+|+++++.
T Consensus 3 ~~~vlI~G~G~vG~~la~~L~~~g~~V~vid~~ 35 (153)
T 1id1_A 3 KDHFIVCGHSILAINTILQLNQRGQNVTVISNL 35 (153)
T ss_dssp CSCEEEECCSHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCCEEEEECC
Confidence 368999999999999999999999999999875
|
| >3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=87.67 E-value=0.44 Score=48.89 Aligned_cols=30 Identities=27% Similarity=0.460 Sum_probs=29.0
Q ss_pred ccEEEECCChHHHHHHHHHHhCCCcEEEEc
Q 008860 73 FDLFTIGAGSGGVRASRFAANFGASVAICE 102 (551)
Q Consensus 73 ~dVvIIGgG~aGl~aA~~l~~~G~~V~liE 102 (551)
++|.|||.|..|+..|..|++.|++|+++|
T Consensus 3 mkI~VIG~G~vG~~lA~~La~~G~~V~~~D 32 (450)
T 3gg2_A 3 LDIAVVGIGYVGLVSATCFAELGANVRCID 32 (450)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEC
T ss_pred CEEEEECcCHHHHHHHHHHHhcCCEEEEEE
Confidence 579999999999999999999999999999
|
| >3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.40A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=87.64 E-value=0.36 Score=48.77 Aligned_cols=33 Identities=15% Similarity=0.178 Sum_probs=30.5
Q ss_pred CeEEEEcCcHHHHHHHHHHHhC--CCeEEEEeecC
Q 008860 246 EKIAIVGGGYIALEFAGIFSGL--TSEVHVFIRQK 278 (551)
Q Consensus 246 ~~vvViG~G~~g~e~a~~l~~~--g~~Vtlv~~~~ 278 (551)
.+|+|||+|.+|+-+|..|++. |.+|+++++..
T Consensus 37 ~dVvIIGaGi~Gls~A~~La~~~pG~~V~vlE~~~ 71 (405)
T 3c4n_A 37 FDIVVIGAGRMGAACAFYLRQLAPGRSLLLVEEGG 71 (405)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSC
T ss_pred CCEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCC
Confidence 4799999999999999999999 99999999864
|
| >3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=87.60 E-value=0.86 Score=44.04 Aligned_cols=75 Identities=23% Similarity=0.341 Sum_probs=48.3
Q ss_pred CeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCCCCCHHHHHHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEEC
Q 008860 246 EKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTN 325 (551)
Q Consensus 246 ~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~ 325 (551)
.++.|||+|.+|.-+|..|. .|.+|+++.|.+. -.+.+++.|+.+..... ... . .+...
T Consensus 3 mkI~IiGaGa~G~~~a~~L~-~g~~V~~~~r~~~------------~~~~l~~~G~~~~~~~~-~~~--~-----~~~~~ 61 (307)
T 3ego_A 3 LKIGIIGGGSVGLLCAYYLS-LYHDVTVVTRRQE------------QAAAIQSEGIRLYKGGE-EFR--A-----DCSAD 61 (307)
T ss_dssp CEEEEECCSHHHHHHHHHHH-TTSEEEEECSCHH------------HHHHHHHHCEEEEETTE-EEE--E-----CCEEE
T ss_pred CEEEEECCCHHHHHHHHHHh-cCCceEEEECCHH------------HHHHHHhCCceEecCCC-eec--c-----ccccc
Confidence 47999999999999999999 8999999987531 12345567887763211 111 0 01111
Q ss_pred CCeEEEeeEEEEecCc
Q 008860 326 KGTVDGFSHVMFATGR 341 (551)
Q Consensus 326 ~G~~i~~d~vi~a~G~ 341 (551)
....-.+|.||+|+-.
T Consensus 62 ~~~~~~~D~vilavK~ 77 (307)
T 3ego_A 62 TSINSDFDLLVVTVKQ 77 (307)
T ss_dssp SSCCSCCSEEEECCCG
T ss_pred ccccCCCCEEEEEeCH
Confidence 1111358999998754
|
| >1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A* | Back alignment and structure |
|---|
Probab=87.54 E-value=0.4 Score=47.56 Aligned_cols=31 Identities=19% Similarity=0.484 Sum_probs=29.2
Q ss_pred CccEEEECCChHHHHHHHHHHhCCC-cEEEEc
Q 008860 72 DFDLFTIGAGSGGVRASRFAANFGA-SVAICE 102 (551)
Q Consensus 72 ~~dVvIIGgG~aGl~aA~~l~~~G~-~V~liE 102 (551)
+.+|||+|+|.+|..+|..|...|. +|+++|
T Consensus 192 ~~kVVv~GAGaAG~~iAkll~~~G~~~I~v~D 223 (388)
T 1vl6_A 192 EVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVD 223 (388)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHHTCCEEEEEE
T ss_pred CcEEEEECCCHHHHHHHHHHHhCCCCeEEEEE
Confidence 4689999999999999999999998 899999
|
| >1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=87.51 E-value=0.43 Score=46.43 Aligned_cols=34 Identities=18% Similarity=0.201 Sum_probs=30.2
Q ss_pred CCCCccEEEECCChHHHHHHHHHHhCCC--cEEEEc
Q 008860 69 SHYDFDLFTIGAGSGGVRASRFAANFGA--SVAICE 102 (551)
Q Consensus 69 ~~~~~dVvIIGgG~aGl~aA~~l~~~G~--~V~liE 102 (551)
|+++.+|+|||+|..|.+.|..|+..+. ++.|+|
T Consensus 2 ~~~~~KI~IiGaG~vG~~~a~~l~~~~~~~el~L~D 37 (318)
T 1ez4_A 2 MPNHQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVD 37 (318)
T ss_dssp BTTBCEEEEECCSHHHHHHHHHHHHHTCCSEEEEEC
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHcCCCCCEEEEEe
Confidence 4556789999999999999999998776 899999
|
| >1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=87.49 E-value=0.51 Score=45.94 Aligned_cols=31 Identities=23% Similarity=0.174 Sum_probs=29.0
Q ss_pred CccEEEECCChHHHHHHHHHHhCCC--cEEEEc
Q 008860 72 DFDLFTIGAGSGGVRASRFAANFGA--SVAICE 102 (551)
Q Consensus 72 ~~dVvIIGgG~aGl~aA~~l~~~G~--~V~liE 102 (551)
..+|+|||+|..|.+.|..|+..+. +|+|+|
T Consensus 7 ~~KI~IiGaG~vG~~~a~~l~~~~~~~ev~L~D 39 (318)
T 1y6j_A 7 RSKVAIIGAGFVGASAAFTMALRQTANELVLID 39 (318)
T ss_dssp CCCEEEECCSHHHHHHHHHHHHTTCSSEEEEEC
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEe
Confidence 3689999999999999999999887 899999
|
| >2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1} | Back alignment and structure |
|---|
Probab=87.45 E-value=0.6 Score=42.33 Aligned_cols=39 Identities=21% Similarity=0.221 Sum_probs=30.5
Q ss_pred cCCCCCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecC
Q 008860 240 DLPSKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQK 278 (551)
Q Consensus 240 ~~~~~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~ 278 (551)
+.+....++.|||.|.+|..+|..|.+.|.+|+++.|.+
T Consensus 14 ~~~~~~~~I~iiG~G~mG~~la~~l~~~g~~V~~~~~~~ 52 (209)
T 2raf_A 14 NLYFQGMEITIFGKGNMGQAIGHNFEIAGHEVTYYGSKD 52 (209)
T ss_dssp ------CEEEEECCSHHHHHHHHHHHHTTCEEEEECTTC
T ss_pred ccccCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence 333345789999999999999999999999999988754
|
| >1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD BCN; 2.25A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=87.43 E-value=0.37 Score=48.63 Aligned_cols=35 Identities=23% Similarity=0.386 Sum_probs=31.8
Q ss_pred CeEEEEcCcHHHHHHHHHHHhC-CCeEEEEeecCcc
Q 008860 246 EKIAIVGGGYIALEFAGIFSGL-TSEVHVFIRQKKV 280 (551)
Q Consensus 246 ~~vvViG~G~~g~e~a~~l~~~-g~~Vtlv~~~~~~ 280 (551)
.+++|||+|..|+-+|..|++. |.+|+++++.+++
T Consensus 8 ~~v~IiGaG~~Gl~aA~~L~~~~g~~v~v~E~~~~~ 43 (399)
T 1v0j_A 8 FDLFVVGSGFFGLTIAERVATQLDKRVLVLERRPHI 43 (399)
T ss_dssp CSEEEECCSHHHHHHHHHHHHHSCCCEEEECSSSSS
T ss_pred CCEEEECCCHHHHHHHHHHHHhCCCCEEEEeCCCCC
Confidence 4799999999999999999998 9999999987654
|
| >1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A* | Back alignment and structure |
|---|
Probab=87.41 E-value=0.44 Score=48.05 Aligned_cols=30 Identities=33% Similarity=0.467 Sum_probs=28.6
Q ss_pred ccEEEECCChHHHHHHHHHHhCCCcEEEEc
Q 008860 73 FDLFTIGAGSGGVRASRFAANFGASVAICE 102 (551)
Q Consensus 73 ~dVvIIGgG~aGl~aA~~l~~~G~~V~liE 102 (551)
..|+|||+|.+|+.++..|...|.+|+++|
T Consensus 173 ~~V~ViGaG~iG~~aa~~a~~~Ga~V~v~D 202 (401)
T 1x13_A 173 AKVMVIGAGVAGLAAIGAANSLGAIVRAFD 202 (401)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEC
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEc
Confidence 579999999999999999999999999999
|
| >1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase, isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP: c.4.1.3 d.16.1.7 | Back alignment and structure |
|---|
Probab=87.36 E-value=0.46 Score=47.32 Aligned_cols=34 Identities=24% Similarity=0.358 Sum_probs=31.0
Q ss_pred eEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCcc
Q 008860 247 KIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKV 280 (551)
Q Consensus 247 ~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~ 280 (551)
+++|||+|..|+-+|..|++.|.+|+++++.+.+
T Consensus 3 ~v~iiG~G~~Gl~~A~~l~~~g~~v~v~E~~~~~ 36 (367)
T 1i8t_A 3 DYIIVGSGLFGAVCANELKKLNKKVLVIEKRNHI 36 (367)
T ss_dssp EEEEECCSHHHHHHHHHHGGGTCCEEEECSSSSS
T ss_pred CEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCC
Confidence 6899999999999999999999999999987643
|
| >1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=87.32 E-value=0.62 Score=38.62 Aligned_cols=32 Identities=19% Similarity=0.173 Sum_probs=29.4
Q ss_pred CeEEEEcCcHHHHHHHHHHHhCCCeEEEEeec
Q 008860 246 EKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQ 277 (551)
Q Consensus 246 ~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~ 277 (551)
.+++|+|+|.+|..++..|.+.|.+|+++++.
T Consensus 5 m~i~IiG~G~iG~~~a~~L~~~g~~v~~~d~~ 36 (140)
T 1lss_A 5 MYIIIAGIGRVGYTLAKSLSEKGHDIVLIDID 36 (140)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEECC
Confidence 47999999999999999999999999999874
|
| >2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=87.21 E-value=0.5 Score=45.71 Aligned_cols=29 Identities=17% Similarity=0.224 Sum_probs=27.9
Q ss_pred cEEEECCChHHHHHHHHHHhCCC--cEEEEc
Q 008860 74 DLFTIGAGSGGVRASRFAANFGA--SVAICE 102 (551)
Q Consensus 74 dVvIIGgG~aGl~aA~~l~~~G~--~V~liE 102 (551)
+|+|||+|..|.+.|..|+..|+ +|+++|
T Consensus 2 kI~VIGaG~vG~~la~~la~~g~~~eV~L~D 32 (304)
T 2v6b_A 2 KVGVVGTGFVGSTAAFALVLRGSCSELVLVD 32 (304)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCSEEEEEC
T ss_pred EEEEECCCHHHHHHHHHHHhCCCCCEEEEEe
Confidence 69999999999999999999998 999999
|
| >2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A* | Back alignment and structure |
|---|
Probab=87.20 E-value=0.48 Score=49.02 Aligned_cols=30 Identities=30% Similarity=0.447 Sum_probs=29.1
Q ss_pred ccEEEECCChHHHHHHHHHHhCCCcEEEEc
Q 008860 73 FDLFTIGAGSGGVRASRFAANFGASVAICE 102 (551)
Q Consensus 73 ~dVvIIGgG~aGl~aA~~l~~~G~~V~liE 102 (551)
++|.|||.|..|+..|..|++.|++|+++|
T Consensus 9 ~~I~VIG~G~vG~~lA~~la~~G~~V~~~d 38 (478)
T 2y0c_A 9 MNLTIIGSGSVGLVTGACLADIGHDVFCLD 38 (478)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEC
T ss_pred ceEEEECcCHHHHHHHHHHHhCCCEEEEEE
Confidence 679999999999999999999999999999
|
| >3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=87.06 E-value=0.44 Score=45.82 Aligned_cols=34 Identities=18% Similarity=0.276 Sum_probs=29.6
Q ss_pred CCCCccEEEECCChHHHHHHHHHHhCCCcEEEEc
Q 008860 69 SHYDFDLFTIGAGSGGVRASRFAANFGASVAICE 102 (551)
Q Consensus 69 ~~~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE 102 (551)
|+++.+|.|||.|.-|...|..|++.|++|+++|
T Consensus 12 M~~~~~I~vIG~G~mG~~~A~~l~~~G~~V~~~d 45 (296)
T 3qha_A 12 TTEQLKLGYIGLGNMGAPMATRMTEWPGGVTVYD 45 (296)
T ss_dssp ---CCCEEEECCSTTHHHHHHHHTTSTTCEEEEC
T ss_pred ccCCCeEEEECcCHHHHHHHHHHHHCCCeEEEEe
Confidence 3345689999999999999999999999999999
|
| >3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58} | Back alignment and structure |
|---|
Probab=87.05 E-value=0.52 Score=46.08 Aligned_cols=30 Identities=23% Similarity=0.334 Sum_probs=27.7
Q ss_pred ccEEEECCChHHHH-HHHHHHhCCCcEEEEc
Q 008860 73 FDLFTIGAGSGGVR-ASRFAANFGASVAICE 102 (551)
Q Consensus 73 ~dVvIIGgG~aGl~-aA~~l~~~G~~V~liE 102 (551)
.+|.|||.|.+|++ +|..|.++|++|++.|
T Consensus 5 ~~i~~iGiGg~Gms~~A~~L~~~G~~V~~~D 35 (326)
T 3eag_A 5 KHIHIIGIGGTFMGGLAAIAKEAGFEVSGCD 35 (326)
T ss_dssp CEEEEESCCSHHHHHHHHHHHHTTCEEEEEE
T ss_pred cEEEEEEECHHHHHHHHHHHHhCCCEEEEEc
Confidence 57999999999997 7888889999999999
|
| >1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A* | Back alignment and structure |
|---|
Probab=87.02 E-value=0.53 Score=45.60 Aligned_cols=30 Identities=20% Similarity=0.276 Sum_probs=28.2
Q ss_pred ccEEEECCChHHHHHHHHHHhCCC-cEEEEc
Q 008860 73 FDLFTIGAGSGGVRASRFAANFGA-SVAICE 102 (551)
Q Consensus 73 ~dVvIIGgG~aGl~aA~~l~~~G~-~V~liE 102 (551)
.+|+|||+|..|...|..|+..|+ +|+|+|
T Consensus 3 ~kI~VIGaG~vG~~~a~~la~~g~~~v~L~D 33 (309)
T 1ur5_A 3 KKISIIGAGFVGSTTAHWLAAKELGDIVLLD 33 (309)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSEEEEEC
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCeEEEEe
Confidence 579999999999999999999986 999999
|
| >3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A* | Back alignment and structure |
|---|
Probab=86.90 E-value=0.39 Score=46.67 Aligned_cols=35 Identities=20% Similarity=0.372 Sum_probs=31.5
Q ss_pred CCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCc
Q 008860 245 PEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKK 279 (551)
Q Consensus 245 ~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~ 279 (551)
.++|.|||+|..|..+|..++..|.+|++++..+.
T Consensus 6 ~~~VaViGaG~MG~giA~~~a~~G~~V~l~D~~~~ 40 (319)
T 3ado_A 6 AGDVLIVGSGLVGRSWAMLFASGGFRVKLYDIEPR 40 (319)
T ss_dssp -CEEEEECCSHHHHHHHHHHHHTTCCEEEECSCHH
T ss_pred CCeEEEECCcHHHHHHHHHHHhCCCeEEEEECCHH
Confidence 46899999999999999999999999999987654
|
| >2rgh_A Alpha-glycerophosphate oxidase; flavoprotein oxidase, oxidoreductase; HET: FAD; 2.30A {Streptococcus SP} PDB: 2rgo_A* | Back alignment and structure |
|---|
Probab=86.83 E-value=0.47 Score=50.39 Aligned_cols=33 Identities=18% Similarity=0.168 Sum_probs=30.9
Q ss_pred CeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecC
Q 008860 246 EKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQK 278 (551)
Q Consensus 246 ~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~ 278 (551)
..|+|||+|.+|+-+|..|++.|.+|+++++.+
T Consensus 33 ~DVvVIGgGi~G~~~A~~La~rG~~V~LlE~~~ 65 (571)
T 2rgh_A 33 LDLLIIGGGITGAGVAVQAAASGIKTGLIEMQD 65 (571)
T ss_dssp BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 479999999999999999999999999999865
|
| >3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi} | Back alignment and structure |
|---|
Probab=86.80 E-value=0.55 Score=37.56 Aligned_cols=33 Identities=24% Similarity=0.268 Sum_probs=29.7
Q ss_pred CCeEEEEcCcHHHHHHHHHHHhCC-CeEEEEeec
Q 008860 245 PEKIAIVGGGYIALEFAGIFSGLT-SEVHVFIRQ 277 (551)
Q Consensus 245 ~~~vvViG~G~~g~e~a~~l~~~g-~~Vtlv~~~ 277 (551)
.++++|+|+|.+|..++..|.+.| .+|+++.|.
T Consensus 5 ~~~v~I~G~G~iG~~~~~~l~~~g~~~v~~~~r~ 38 (118)
T 3ic5_A 5 RWNICVVGAGKIGQMIAALLKTSSNYSVTVADHD 38 (118)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHCSSEEEEEEESC
T ss_pred cCeEEEECCCHHHHHHHHHHHhCCCceEEEEeCC
Confidence 368999999999999999999999 889988875
|
| >3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=86.77 E-value=0.63 Score=45.14 Aligned_cols=31 Identities=23% Similarity=0.267 Sum_probs=29.1
Q ss_pred CccEEEECCChHHHHHHHHHHhCCC-cEEEEc
Q 008860 72 DFDLFTIGAGSGGVRASRFAANFGA-SVAICE 102 (551)
Q Consensus 72 ~~dVvIIGgG~aGl~aA~~l~~~G~-~V~liE 102 (551)
..+|.|||+|..|.+.|..|+..|+ +|+|+|
T Consensus 8 ~~kv~ViGaG~vG~~ia~~l~~~g~~~v~l~D 39 (315)
T 3tl2_A 8 RKKVSVIGAGFTGATTAFLLAQKELADVVLVD 39 (315)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEe
Confidence 3579999999999999999999999 999999
|
| >2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A | Back alignment and structure |
|---|
Probab=86.75 E-value=0.65 Score=50.25 Aligned_cols=37 Identities=24% Similarity=0.398 Sum_probs=33.6
Q ss_pred CCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCcc
Q 008860 244 KPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKV 280 (551)
Q Consensus 244 ~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~ 280 (551)
..++|+|||+|..|+.+|..|.+.|.+|+++++.+.+
T Consensus 106 ~~~~v~viG~G~~gl~~a~~l~~~g~~v~~~e~~~~~ 142 (662)
T 2z3y_A 106 KTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRV 142 (662)
T ss_dssp CCCEEEEECCBHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred CCCeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 3579999999999999999999999999999987654
|
| >3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=86.73 E-value=0.39 Score=46.18 Aligned_cols=30 Identities=13% Similarity=0.129 Sum_probs=28.7
Q ss_pred ccEEEECCChHHHHHHHHHHhCCCcEEEEc
Q 008860 73 FDLFTIGAGSGGVRASRFAANFGASVAICE 102 (551)
Q Consensus 73 ~dVvIIGgG~aGl~aA~~l~~~G~~V~liE 102 (551)
++|.|||+|.-|.+.|..|++.|.+|++++
T Consensus 3 mkI~iiGaGa~G~~~a~~L~~~g~~V~~~~ 32 (294)
T 3g17_A 3 LSVAIIGPGAVGTTIAYELQQSLPHTTLIG 32 (294)
T ss_dssp CCEEEECCSHHHHHHHHHHHHHCTTCEEEE
T ss_pred cEEEEECCCHHHHHHHHHHHHCCCeEEEEE
Confidence 579999999999999999999999999999
|
| >4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A* | Back alignment and structure |
|---|
Probab=86.58 E-value=0.55 Score=46.53 Aligned_cols=30 Identities=17% Similarity=0.317 Sum_probs=28.7
Q ss_pred ccEEEECCChHHHHHHHHHHhCCCcEEEEc
Q 008860 73 FDLFTIGAGSGGVRASRFAANFGASVAICE 102 (551)
Q Consensus 73 ~dVvIIGgG~aGl~aA~~l~~~G~~V~liE 102 (551)
..|+|||||.-|..+++.+++.|++|+++|
T Consensus 2 K~I~ilGgg~~g~~~~~~Ak~~G~~vv~vd 31 (363)
T 4ffl_A 2 KTICLVGGKLQGFEAAYLSKKAGMKVVLVD 31 (363)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEE
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEe
Confidence 579999999999999999999999999999
|
| >1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A* | Back alignment and structure |
|---|
Probab=86.54 E-value=0.51 Score=50.07 Aligned_cols=35 Identities=14% Similarity=0.178 Sum_probs=32.1
Q ss_pred CeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCcc
Q 008860 246 EKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKV 280 (551)
Q Consensus 246 ~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~ 280 (551)
..|+|||+|..|+.+|..+++.|.+|+++++.+.+
T Consensus 127 ~DVvVVGaG~aGl~aA~~la~~G~~V~vlEk~~~~ 161 (571)
T 1y0p_A 127 VDVVVVGSGGAGFSAAISATDSGAKVILIEKEPVI 161 (571)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCC
Confidence 47999999999999999999999999999987654
|
| >1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B* | Back alignment and structure |
|---|
Probab=86.38 E-value=0.47 Score=44.39 Aligned_cols=30 Identities=23% Similarity=0.470 Sum_probs=28.4
Q ss_pred ccEEEECCChHHHHHHHHHHhCCC-cEEEEc
Q 008860 73 FDLFTIGAGSGGVRASRFAANFGA-SVAICE 102 (551)
Q Consensus 73 ~dVvIIGgG~aGl~aA~~l~~~G~-~V~liE 102 (551)
.+|+|||+|..|..+|..|++.|. +++|+|
T Consensus 32 ~~VlVvG~Gg~G~~va~~La~~Gv~~i~lvD 62 (249)
T 1jw9_B 32 SRVLIVGLGGLGCAASQYLASAGVGNLTLLD 62 (249)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCSEEEEEC
T ss_pred CeEEEEeeCHHHHHHHHHHHHcCCCeEEEEc
Confidence 579999999999999999999997 899999
|
| >2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A | Back alignment and structure |
|---|
Probab=86.35 E-value=0.69 Score=51.39 Aligned_cols=36 Identities=22% Similarity=0.377 Sum_probs=32.8
Q ss_pred CCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCc
Q 008860 244 KPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKK 279 (551)
Q Consensus 244 ~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~ 279 (551)
..++|+|||+|..|+.+|..|.+.|.+|+++++.+.
T Consensus 277 ~~~~v~viG~G~aGl~~A~~l~~~g~~v~v~E~~~~ 312 (852)
T 2xag_A 277 KTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDR 312 (852)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCcEEEEEecCc
Confidence 356999999999999999999999999999997764
|
| >3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=86.31 E-value=0.68 Score=44.80 Aligned_cols=32 Identities=19% Similarity=0.114 Sum_probs=30.0
Q ss_pred CCccEEEECCChHHHHHHHHHHhCCCcEEEEc
Q 008860 71 YDFDLFTIGAGSGGVRASRFAANFGASVAICE 102 (551)
Q Consensus 71 ~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE 102 (551)
.+.+|.|||.|.-|...|..|++.|++|+++|
T Consensus 20 ~m~~I~iIG~G~mG~~~A~~l~~~G~~V~~~d 51 (310)
T 3doj_A 20 HMMEVGFLGLGIMGKAMSMNLLKNGFKVTVWN 51 (310)
T ss_dssp CSCEEEEECCSHHHHHHHHHHHHTTCEEEEEC
T ss_pred cCCEEEEECccHHHHHHHHHHHHCCCeEEEEe
Confidence 34689999999999999999999999999999
|
| >1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A* | Back alignment and structure |
|---|
Probab=86.28 E-value=0.55 Score=47.05 Aligned_cols=30 Identities=27% Similarity=0.436 Sum_probs=28.6
Q ss_pred ccEEEECCChHHHHHHHHHHhCCCcEEEEc
Q 008860 73 FDLFTIGAGSGGVRASRFAANFGASVAICE 102 (551)
Q Consensus 73 ~dVvIIGgG~aGl~aA~~l~~~G~~V~liE 102 (551)
.+|+|||+|.+|+.++..|...|.+|+++|
T Consensus 173 ~~V~ViGaG~iG~~aa~~a~~~Ga~V~~~d 202 (384)
T 1l7d_A 173 ARVLVFGVGVAGLQAIATAKRLGAVVMATD 202 (384)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEC
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEe
Confidence 579999999999999999999999999999
|
| >3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1} | Back alignment and structure |
|---|
Probab=86.23 E-value=0.51 Score=48.65 Aligned_cols=31 Identities=19% Similarity=0.086 Sum_probs=29.4
Q ss_pred CccEEEECCChHHHHHHHHHHhC-CC-cEEEEc
Q 008860 72 DFDLFTIGAGSGGVRASRFAANF-GA-SVAICE 102 (551)
Q Consensus 72 ~~dVvIIGgG~aGl~aA~~l~~~-G~-~V~liE 102 (551)
..+|.|||+|.-|+..|..|++. |+ +|+++|
T Consensus 18 ~mkIaVIGlG~mG~~lA~~la~~~G~~~V~~~D 50 (478)
T 3g79_A 18 IKKIGVLGMGYVGIPAAVLFADAPCFEKVLGFQ 50 (478)
T ss_dssp CCEEEEECCSTTHHHHHHHHHHSTTCCEEEEEC
T ss_pred CCEEEEECcCHHHHHHHHHHHHhCCCCeEEEEE
Confidence 35799999999999999999999 99 999999
|
| >3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=86.10 E-value=0.61 Score=45.37 Aligned_cols=30 Identities=23% Similarity=0.336 Sum_probs=27.8
Q ss_pred CccEEEECCChHHHHHHHHHHhCCCcEEEE
Q 008860 72 DFDLFTIGAGSGGVRASRFAANFGASVAIC 101 (551)
Q Consensus 72 ~~dVvIIGgG~aGl~aA~~l~~~G~~V~li 101 (551)
..+|.|||+|.-|.+.|..|++.|++|+++
T Consensus 19 ~~kI~IiGaGa~G~~~a~~L~~~G~~V~l~ 48 (318)
T 3hwr_A 19 GMKVAIMGAGAVGCYYGGMLARAGHEVILI 48 (318)
T ss_dssp -CEEEEESCSHHHHHHHHHHHHTTCEEEEE
T ss_pred CCcEEEECcCHHHHHHHHHHHHCCCeEEEE
Confidence 457999999999999999999999999998
|
| >3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=86.09 E-value=0.66 Score=45.91 Aligned_cols=31 Identities=26% Similarity=0.319 Sum_probs=29.4
Q ss_pred CccEEEECCChHHHHHHHHHHhCCCcEEEEc
Q 008860 72 DFDLFTIGAGSGGVRASRFAANFGASVAICE 102 (551)
Q Consensus 72 ~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE 102 (551)
..+|.|||+|.-|.+.|..|++.|++|++++
T Consensus 29 ~mkI~VIGaG~mG~alA~~La~~G~~V~l~~ 59 (356)
T 3k96_A 29 KHPIAILGAGSWGTALALVLARKGQKVRLWS 59 (356)
T ss_dssp CSCEEEECCSHHHHHHHHHHHTTTCCEEEEC
T ss_pred CCeEEEECccHHHHHHHHHHHHCCCeEEEEe
Confidence 3589999999999999999999999999999
|
| >2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A | Back alignment and structure |
|---|
Probab=86.07 E-value=0.49 Score=48.85 Aligned_cols=34 Identities=21% Similarity=0.203 Sum_probs=30.3
Q ss_pred CCCCccEEEECCChHHHHHHHHHHhC--CCcEEEEc
Q 008860 69 SHYDFDLFTIGAGSGGVRASRFAANF--GASVAICE 102 (551)
Q Consensus 69 ~~~~~dVvIIGgG~aGl~aA~~l~~~--G~~V~liE 102 (551)
|.++.+|.|||.|..|+..|..|++. |++|+++|
T Consensus 2 M~~~mkI~VIG~G~mG~~lA~~La~~g~G~~V~~~d 37 (467)
T 2q3e_A 2 MFEIKKICCIGAGYVGGPTCSVIAHMCPEIRVTVVD 37 (467)
T ss_dssp CCCCCEEEEECCSTTHHHHHHHHHHHCTTSEEEEEC
T ss_pred CCCccEEEEECCCHHHHHHHHHHHhcCCCCEEEEEE
Confidence 44446899999999999999999998 89999999
|
| >2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1} | Back alignment and structure |
|---|
Probab=86.03 E-value=0.68 Score=41.96 Aligned_cols=31 Identities=16% Similarity=0.193 Sum_probs=28.8
Q ss_pred CccEEEECCChHHHHHHHHHHhCCCcEEEEc
Q 008860 72 DFDLFTIGAGSGGVRASRFAANFGASVAICE 102 (551)
Q Consensus 72 ~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE 102 (551)
..+|.|||+|..|.+.|..|++.|.+|++++
T Consensus 19 ~~~I~iiG~G~mG~~la~~l~~~g~~V~~~~ 49 (209)
T 2raf_A 19 GMEITIFGKGNMGQAIGHNFEIAGHEVTYYG 49 (209)
T ss_dssp -CEEEEECCSHHHHHHHHHHHHTTCEEEEEC
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEc
Confidence 3579999999999999999999999999999
|
| >1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A* | Back alignment and structure |
|---|
Probab=85.92 E-value=0.64 Score=44.27 Aligned_cols=29 Identities=17% Similarity=0.087 Sum_probs=28.0
Q ss_pred cEEEECCChHHHHHHHHHHhCCCcEEEEc
Q 008860 74 DLFTIGAGSGGVRASRFAANFGASVAICE 102 (551)
Q Consensus 74 dVvIIGgG~aGl~aA~~l~~~G~~V~liE 102 (551)
+|.|||+|..|...|..|++.|++|++++
T Consensus 2 ~i~iiG~G~~G~~~a~~l~~~g~~V~~~~ 30 (291)
T 1ks9_A 2 KITVLGCGALGQLWLTALCKQGHEVQGWL 30 (291)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCEEEEEC
T ss_pred eEEEECcCHHHHHHHHHHHhCCCCEEEEE
Confidence 59999999999999999999999999999
|
| >3da1_A Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9KDW6 X-RAY, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.70A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=85.89 E-value=0.67 Score=49.03 Aligned_cols=33 Identities=12% Similarity=0.065 Sum_probs=31.0
Q ss_pred CeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecC
Q 008860 246 EKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQK 278 (551)
Q Consensus 246 ~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~ 278 (551)
-.|+|||+|..|+-+|..|++.|.+|.++++.+
T Consensus 19 ~DVvVIGgGi~Gl~~A~~La~~G~~V~LlEk~d 51 (561)
T 3da1_A 19 LDLLVIGGGITGAGIALDAQVRGIQTGLVEMND 51 (561)
T ss_dssp EEEEEECCSHHHHHHHHHHHTTTCCEEEEESSS
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCcEEEEECCC
Confidence 479999999999999999999999999999874
|
| >1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A | Back alignment and structure |
|---|
Probab=85.87 E-value=0.6 Score=46.34 Aligned_cols=30 Identities=30% Similarity=0.521 Sum_probs=28.7
Q ss_pred ccEEEECCChHHHHHHHHHHhCCCcEEEEc
Q 008860 73 FDLFTIGAGSGGVRASRFAANFGASVAICE 102 (551)
Q Consensus 73 ~dVvIIGgG~aGl~aA~~l~~~G~~V~liE 102 (551)
..|+|+|+|.+|+.++..|+..|.+|++++
T Consensus 168 ~~VlViGaGgvG~~aa~~a~~~Ga~V~v~d 197 (361)
T 1pjc_A 168 GKVVILGGGVVGTEAAKMAVGLGAQVQIFD 197 (361)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEE
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEe
Confidence 579999999999999999999999999999
|
| >3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum} | Back alignment and structure |
|---|
Probab=85.86 E-value=0.72 Score=47.48 Aligned_cols=41 Identities=22% Similarity=0.355 Sum_probs=36.0
Q ss_pred CccEEEECCChHHHHHHHHHHhCC--CcEEEEccCCCCCCCCCCCCCCCeec
Q 008860 72 DFDLFTIGAGSGGVRASRFAANFG--ASVAICELPFSTISSETTGGVGGTCV 121 (551)
Q Consensus 72 ~~dVvIIGgG~aGl~aA~~l~~~G--~~V~liE~~~~~~~~~~~~~~GG~~~ 121 (551)
++||+|||||++|+++|++|++.| ++|+|+|+ ...+||.+.
T Consensus 4 ~~~v~IiGaG~~Gl~~A~~L~~~g~~~~v~v~E~---------~~~~GG~~~ 46 (475)
T 3lov_A 4 SKRLVIVGGGITGLAAAYYAERAFPDLNITLLEA---------GERLGGKVA 46 (475)
T ss_dssp SCEEEEECCBHHHHHHHHHHHHHCTTSEEEEECS---------SSSSBTTCC
T ss_pred cccEEEECCCHHHHHHHHHHHHhCCCCCEEEEEC---------CCCCCceeE
Confidence 589999999999999999999999 99999993 466777654
|
| >3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A {Aeropyrum pernix} PDB: 3vqr_A* | Back alignment and structure |
|---|
Probab=85.84 E-value=0.44 Score=48.68 Aligned_cols=31 Identities=23% Similarity=0.205 Sum_probs=29.5
Q ss_pred CeEEEEcCcHHHHHHHHHHHhCC-CeEEEEee
Q 008860 246 EKIAIVGGGYIALEFAGIFSGLT-SEVHVFIR 276 (551)
Q Consensus 246 ~~vvViG~G~~g~e~a~~l~~~g-~~Vtlv~~ 276 (551)
.+|+|||+|..|+.+|..|++.| .+|+++++
T Consensus 24 ~dVvIIGgGiaGls~A~~La~~G~~~V~vlE~ 55 (448)
T 3axb_A 24 FDYVVVGAGVVGLAAAYYLKVWSGGSVLVVDA 55 (448)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHHCSCEEEEES
T ss_pred CCEEEECcCHHHHHHHHHHHhCCCCcEEEEcc
Confidence 47999999999999999999999 99999998
|
| >3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum} | Back alignment and structure |
|---|
Probab=85.72 E-value=0.57 Score=47.63 Aligned_cols=31 Identities=26% Similarity=0.142 Sum_probs=29.6
Q ss_pred CccEEEECCChHHHHHHHHHHhCCCcEEEEc
Q 008860 72 DFDLFTIGAGSGGVRASRFAANFGASVAICE 102 (551)
Q Consensus 72 ~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE 102 (551)
+.+|.|||.|..||..|..+++.|++|+.+|
T Consensus 21 m~~IaViGlGYVGLp~A~~~A~~G~~V~g~D 51 (444)
T 3vtf_A 21 MASLSVLGLGYVGVVHAVGFALLGHRVVGYD 51 (444)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHTCEEEEEC
T ss_pred CCEEEEEccCHHHHHHHHHHHhCCCcEEEEE
Confidence 4689999999999999999999999999999
|
| >3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri} | Back alignment and structure |
|---|
Probab=85.38 E-value=0.66 Score=44.54 Aligned_cols=32 Identities=19% Similarity=0.135 Sum_probs=29.2
Q ss_pred CCccEEEECCChHHHHHHHHHHhCCCcEEEEc
Q 008860 71 YDFDLFTIGAGSGGVRASRFAANFGASVAICE 102 (551)
Q Consensus 71 ~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE 102 (551)
.+.+|.|||+|..|...|..|.+.|++|++++
T Consensus 3 ~~~~i~iiG~G~~G~~~a~~l~~~g~~V~~~~ 34 (301)
T 3cky_A 3 KSIKIGFIGLGAMGKPMAINLLKEGVTVYAFD 34 (301)
T ss_dssp -CCEEEEECCCTTHHHHHHHHHHTTCEEEEEC
T ss_pred CCCEEEEECccHHHHHHHHHHHHCCCeEEEEe
Confidence 34689999999999999999999999999998
|
| >1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 | Back alignment and structure |
|---|
Probab=85.29 E-value=0.57 Score=49.65 Aligned_cols=35 Identities=11% Similarity=0.108 Sum_probs=31.9
Q ss_pred CeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCcc
Q 008860 246 EKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKV 280 (551)
Q Consensus 246 ~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~ 280 (551)
-.|+|||+|..|+.+|..+++.|.+|+++++.+.+
T Consensus 122 ~DVvVVG~G~aGl~aA~~la~~G~~V~vlEk~~~~ 156 (566)
T 1qo8_A 122 TQVLVVGAGSAGFNASLAAKKAGANVILVDKAPFS 156 (566)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSS
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCC
Confidence 37999999999999999999999999999987643
|
| >3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A* | Back alignment and structure |
|---|
Probab=85.23 E-value=0.76 Score=46.48 Aligned_cols=30 Identities=17% Similarity=0.303 Sum_probs=28.9
Q ss_pred ccEEEECCChHHHHHHHHHHhCCCcEEEEc
Q 008860 73 FDLFTIGAGSGGVRASRFAANFGASVAICE 102 (551)
Q Consensus 73 ~dVvIIGgG~aGl~aA~~l~~~G~~V~liE 102 (551)
.+|+|||.|..|...|..|.+.|.+|++||
T Consensus 5 ~~viIiG~Gr~G~~va~~L~~~g~~vvvId 34 (413)
T 3l9w_A 5 MRVIIAGFGRFGQITGRLLLSSGVKMVVLD 34 (413)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCEEEEE
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCCEEEEE
Confidence 469999999999999999999999999999
|
| >3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=85.20 E-value=0.7 Score=44.66 Aligned_cols=29 Identities=21% Similarity=0.367 Sum_probs=27.7
Q ss_pred ccEEEECCChHHHHHHHHHHhCCCcEEEEc
Q 008860 73 FDLFTIGAGSGGVRASRFAANFGASVAICE 102 (551)
Q Consensus 73 ~dVvIIGgG~aGl~aA~~l~~~G~~V~liE 102 (551)
++|+|||+|.-|.+.|..|+ .|.+|++++
T Consensus 3 mkI~IiGaGa~G~~~a~~L~-~g~~V~~~~ 31 (307)
T 3ego_A 3 LKIGIIGGGSVGLLCAYYLS-LYHDVTVVT 31 (307)
T ss_dssp CEEEEECCSHHHHHHHHHHH-TTSEEEEEC
T ss_pred CEEEEECCCHHHHHHHHHHh-cCCceEEEE
Confidence 57999999999999999999 999999998
|
| >2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase type II family, thiazole synthase, mitochondria DNA repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} PDB: 3fpz_A* | Back alignment and structure |
|---|
Probab=84.97 E-value=0.61 Score=45.46 Aligned_cols=157 Identities=15% Similarity=0.150 Sum_probs=97.9
Q ss_pred eEEEEcCcHHHHHHHHHHHhC--CCeEEEEeecCccCCC--------------------------------------CCH
Q 008860 247 KIAIVGGGYIALEFAGIFSGL--TSEVHVFIRQKKVLRG--------------------------------------FDE 286 (551)
Q Consensus 247 ~vvViG~G~~g~e~a~~l~~~--g~~Vtlv~~~~~~l~~--------------------------------------~~~ 286 (551)
+|+|||+|+.|+.+|..|++. |.+|+++++.+..... ...
T Consensus 67 dv~IiG~G~aGl~aA~~la~~~~g~~V~v~e~~~~~ggg~~~~g~~~~~~~~~~~~~~~L~~~Gv~~~~~g~~~~~~~~~ 146 (326)
T 2gjc_A 67 DVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGGSWLGGQLFSAMVMRKPAHLFLQELEIPYEDEGDYVVVKHAA 146 (326)
T ss_dssp SEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSCCTTTTCCGGGCCCEEEETTTHHHHHHTTCCCEECSSEEEESCHH
T ss_pred CEEEECccHHHHHHHHHHHhcCCCCeEEEEecCccccccccccCcccchhhhhhHHHHHHHhhCcccccCCCeEEEcchH
Confidence 799999999999999999998 9999999986543100 112
Q ss_pred HHHHHHHHHHHh-cCcEEEcCcccEEEEEcC----C--ceEEEEEC--------------CCeEEEe-------------
Q 008860 287 DIRDFVAEQMSL-RGIEFHTEESPQAILKST----D--GSLSVKTN--------------KGTVDGF------------- 332 (551)
Q Consensus 287 ~~~~~l~~~l~~-~Gv~i~~~~~v~~i~~~~----~--~~~~V~~~--------------~G~~i~~------------- 332 (551)
++...+.+.+.+ .|++++.+++|+++..++ + .+..|.+. ++.++.+
T Consensus 147 ~~~~~L~~~a~~~~GV~i~~~~~V~~Ll~~~~~~~g~~rV~GVvv~~~~v~~~g~~~~~~d~~~I~A~G~~~~~~~~~~~ 226 (326)
T 2gjc_A 147 LFISTVLSKVLQLPNVKLFNATCVEDLVTRPPTEKGEVTVAGVVTNWTLVTQAHGTQCCMDPNVIELAGYKNDGTRDLSQ 226 (326)
T ss_dssp HHHHHHHHHHHTSTTEEEETTEEEEEEEECCCC-----CEEEEEEEEHHHHTC---CCCCCCEEEEESCCCSSSCCCSST
T ss_pred HHHHHHHHHHHHhcCcEEEecceeeeeeecccccCCCcEEEEEEecceeecccccceeccCceEEEEeeccccccccccc
Confidence 334455666666 499999999999998763 2 33445432 3457999
Q ss_pred --eEEEEecCcCCCCCCCCccccCeeecCCC------CeEeC-------CCCCC--CCCcEEEeCcCCC----CC---CC
Q 008860 333 --SHVMFATGRRPNTKNLGLEKVGVKMTKNG------AIEVD-------EYSGT--AVPSIWAVGDVTD----RI---NL 388 (551)
Q Consensus 333 --d~vi~a~G~~p~~~~l~l~~~gl~~~~~G------~i~vd-------~~~~t--~~~~vya~GD~~~----~~---~~ 388 (551)
+.||.|+|......-. +...-..++..+ ....+ ++.+- -+|++|++|-... .+ +.
T Consensus 227 ~~~~VV~ATG~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~e~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~r~g~~ 305 (326)
T 2gjc_A 227 KHGVILSTTGHDGPFGAF-CAKRIVDIDQNQKLGGMKGLDMNHAEHDVVIHSGAYAGVDNMYFAGMEVAELDGLNRMGPT 305 (326)
T ss_dssp TCCEEEECCCCC--CCSH-HHHHHHHHHSSCCCCCCCCBCHHHHHHHHHHHCEECTTSTTEEECTHHHHHHHTCCBCCSC
T ss_pred cCCEEEECcCCCchHHHH-HHhhccccccccccCceeccccccchhheeecCCCccccCCEEECChHHHHhcCCCCCChh
Confidence 9999999987644211 111000011111 11111 12222 5799999998874 22 22
Q ss_pred hHHHHHhHHHHHHHHc
Q 008860 389 TPVALMEGGALAKTLF 404 (551)
Q Consensus 389 ~~~A~~~g~~aa~~i~ 404 (551)
.-.-...|+.+|+.|+
T Consensus 306 fg~m~~sg~~~a~~~~ 321 (326)
T 2gjc_A 306 FGAMALSGVHAAEQIL 321 (326)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhHHHHHHHH
Confidence 2233477888888775
|
| >4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine dinucleotide, isomerase; HET: FAD UDP; 2.25A {Trypanosoma cruzi} PDB: 4dsh_A* | Back alignment and structure |
|---|
Probab=84.93 E-value=0.8 Score=47.44 Aligned_cols=36 Identities=25% Similarity=0.313 Sum_probs=32.3
Q ss_pred CCeEEEEcCcHHHHHHHHHHHhCC-CeEEEEeecCcc
Q 008860 245 PEKIAIVGGGYIALEFAGIFSGLT-SEVHVFIRQKKV 280 (551)
Q Consensus 245 ~~~vvViG~G~~g~e~a~~l~~~g-~~Vtlv~~~~~~ 280 (551)
..+++|||+|..|+-+|..|.+.| .+|+++++.+.+
T Consensus 9 ~~~v~iiG~G~~Gl~~A~~l~~~g~~~v~v~E~~~~~ 45 (484)
T 4dsg_A 9 TPKIVIIGAGPTGLGAAVRLTELGYKNWHLYECNDTP 45 (484)
T ss_dssp SCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESSSSS
T ss_pred CCCEEEECcCHHHHHHHHHHHHcCCCCEEEEeCCCCC
Confidence 458999999999999999999998 799999988654
|
| >2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A* | Back alignment and structure |
|---|
Probab=84.87 E-value=0.7 Score=38.44 Aligned_cols=33 Identities=15% Similarity=0.155 Sum_probs=29.9
Q ss_pred CCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeec
Q 008860 245 PEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQ 277 (551)
Q Consensus 245 ~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~ 277 (551)
.++++|+|+|.+|..++..|.+.|.+|+++++.
T Consensus 6 ~~~v~I~G~G~iG~~~a~~l~~~g~~v~~~d~~ 38 (144)
T 2hmt_A 6 NKQFAVIGLGRFGGSIVKELHRMGHEVLAVDIN 38 (144)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTCCCEEEESC
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 357999999999999999999999999988874
|
| >3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=84.87 E-value=0.67 Score=42.18 Aligned_cols=32 Identities=28% Similarity=0.137 Sum_probs=29.3
Q ss_pred CCccEEEECC-ChHHHHHHHHHHhCCCcEEEEc
Q 008860 71 YDFDLFTIGA-GSGGVRASRFAANFGASVAICE 102 (551)
Q Consensus 71 ~~~dVvIIGg-G~aGl~aA~~l~~~G~~V~liE 102 (551)
.+.+|+|+|| |..|...+..|.+.|++|.+++
T Consensus 3 ~m~~ilItGatG~iG~~l~~~L~~~g~~V~~~~ 35 (227)
T 3dhn_A 3 KVKKIVLIGASGFVGSALLNEALNRGFEVTAVV 35 (227)
T ss_dssp CCCEEEEETCCHHHHHHHHHHHHTTTCEEEEEC
T ss_pred CCCEEEEEcCCchHHHHHHHHHHHCCCEEEEEE
Confidence 3467999996 9999999999999999999999
|
| >3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A* | Back alignment and structure |
|---|
Probab=84.86 E-value=0.83 Score=44.49 Aligned_cols=31 Identities=19% Similarity=0.191 Sum_probs=29.0
Q ss_pred CccEEEECCChHHHHHHHHHHhCCC-cEEEEc
Q 008860 72 DFDLFTIGAGSGGVRASRFAANFGA-SVAICE 102 (551)
Q Consensus 72 ~~dVvIIGgG~aGl~aA~~l~~~G~-~V~liE 102 (551)
..+|.|||+|..|.+.|..|+..|+ +|+|+|
T Consensus 7 ~~kI~viGaG~vG~~~a~~l~~~~~~~v~L~D 38 (324)
T 3gvi_A 7 RNKIALIGSGMIGGTLAHLAGLKELGDVVLFD 38 (324)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEe
Confidence 4589999999999999999999988 999999
|
| >4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A* | Back alignment and structure |
|---|
Probab=84.76 E-value=0.65 Score=44.32 Aligned_cols=34 Identities=12% Similarity=0.108 Sum_probs=31.1
Q ss_pred CeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCc
Q 008860 246 EKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKK 279 (551)
Q Consensus 246 ~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~ 279 (551)
++|.|||+|.+|..+|..+.+.|.+|+++++.+.
T Consensus 5 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~ 38 (283)
T 4e12_A 5 TNVTVLGTGVLGSQIAFQTAFHGFAVTAYDINTD 38 (283)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHH
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 6899999999999999999999999999987653
|
| >3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A* | Back alignment and structure |
|---|
Probab=84.70 E-value=0.74 Score=44.90 Aligned_cols=31 Identities=23% Similarity=0.183 Sum_probs=28.5
Q ss_pred CccEEEECCChHHHHHHHHHHhCCC--cEEEEc
Q 008860 72 DFDLFTIGAGSGGVRASRFAANFGA--SVAICE 102 (551)
Q Consensus 72 ~~dVvIIGgG~aGl~aA~~l~~~G~--~V~liE 102 (551)
..+|.|||+|..|.+.|..|+..|. +++++|
T Consensus 5 ~~kI~ViGaG~vG~~~a~~l~~~~~~~~l~l~D 37 (326)
T 3pqe_A 5 VNKVALIGAGFVGSSYAFALINQGITDELVVID 37 (326)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEEC
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCceEEEEe
Confidence 3579999999999999999999887 899999
|
| >4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=84.68 E-value=0.8 Score=45.34 Aligned_cols=34 Identities=18% Similarity=0.198 Sum_probs=29.8
Q ss_pred CCCCccEEEECCChHHHHHHHHHHhCCCcEEEEc
Q 008860 69 SHYDFDLFTIGAGSGGVRASRFAANFGASVAICE 102 (551)
Q Consensus 69 ~~~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE 102 (551)
|....+|.|||.|.-|...|..|++.|++|+++|
T Consensus 19 Mm~~mkIgiIGlG~mG~~~A~~L~~~G~~V~v~d 52 (358)
T 4e21_A 19 YFQSMQIGMIGLGRMGADMVRRLRKGGHECVVYD 52 (358)
T ss_dssp ---CCEEEEECCSHHHHHHHHHHHHTTCEEEEEC
T ss_pred hhcCCEEEEECchHHHHHHHHHHHhCCCEEEEEe
Confidence 4445789999999999999999999999999999
|
| >4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase, dehydogenase, steroid catabolism; HET: FAD; 1.60A {Rhodococcus jostii} PDB: 4at2_A* | Back alignment and structure |
|---|
Probab=84.60 E-value=0.8 Score=47.78 Aligned_cols=34 Identities=15% Similarity=0.131 Sum_probs=31.4
Q ss_pred eEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCcc
Q 008860 247 KIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKV 280 (551)
Q Consensus 247 ~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~ 280 (551)
.|+|||+|..|+-+|..+++.|.+|.++++.+.+
T Consensus 43 DVvVVGaG~AGl~AA~~aa~~G~~V~vlEk~~~~ 76 (510)
T 4at0_A 43 DVVVAGYGIAGVAASIEAARAGADVLVLERTSGW 76 (510)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCC
Confidence 6999999999999999999999999999987653
|
| >3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium} | Back alignment and structure |
|---|
Probab=84.56 E-value=0.38 Score=40.64 Aligned_cols=30 Identities=10% Similarity=0.144 Sum_probs=28.0
Q ss_pred ccEEEECCChHHHHHHHHHHhCCCcEEEEc
Q 008860 73 FDLFTIGAGSGGVRASRFAANFGASVAICE 102 (551)
Q Consensus 73 ~dVvIIGgG~aGl~aA~~l~~~G~~V~liE 102 (551)
.+|+|||+|..|...+..|.+.|.+|++++
T Consensus 22 ~~v~iiG~G~iG~~~a~~l~~~g~~v~v~~ 51 (144)
T 3oj0_A 22 NKILLVGNGMLASEIAPYFSYPQYKVTVAG 51 (144)
T ss_dssp CEEEEECCSHHHHHHGGGCCTTTCEEEEEE
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEc
Confidence 479999999999999999999999999998
|
| >1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1 | Back alignment and structure |
|---|
Probab=84.52 E-value=0.87 Score=43.10 Aligned_cols=35 Identities=17% Similarity=0.255 Sum_probs=31.8
Q ss_pred CCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecC
Q 008860 244 KPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQK 278 (551)
Q Consensus 244 ~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~ 278 (551)
.+++|+|||+|.+|...+..|.+.|++|+++....
T Consensus 12 ~~k~VLVVGgG~va~rka~~Ll~~Ga~VtViap~~ 46 (274)
T 1kyq_A 12 KDKRILLIGGGEVGLTRLYKLMPTGCKLTLVSPDL 46 (274)
T ss_dssp TTCEEEEEEESHHHHHHHHHHGGGTCEEEEEEEEE
T ss_pred CCCEEEEECCcHHHHHHHHHHHhCCCEEEEEcCCC
Confidence 36899999999999999999999999999998643
|
| >1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=84.35 E-value=0.89 Score=46.78 Aligned_cols=30 Identities=27% Similarity=0.231 Sum_probs=28.8
Q ss_pred ccEEEECCChHHHHHHHHHHhCCCcEEEEc
Q 008860 73 FDLFTIGAGSGGVRASRFAANFGASVAICE 102 (551)
Q Consensus 73 ~dVvIIGgG~aGl~aA~~l~~~G~~V~liE 102 (551)
.+|.|||+|.-|...|..|++.|++|+++|
T Consensus 38 ~kV~VIGaG~MG~~iA~~la~~G~~V~l~D 67 (463)
T 1zcj_A 38 SSVGVLGLGTMGRGIAISFARVGISVVAVE 67 (463)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTTCEEEEEC
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEE
Confidence 479999999999999999999999999999
|
| >1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=84.31 E-value=0.84 Score=44.66 Aligned_cols=31 Identities=26% Similarity=0.464 Sum_probs=29.3
Q ss_pred CccEEEECCChHHHHHHHHHHhCCCcEEEEc
Q 008860 72 DFDLFTIGAGSGGVRASRFAANFGASVAICE 102 (551)
Q Consensus 72 ~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE 102 (551)
..+|.|||+|.-|...|..|++.|++|++++
T Consensus 14 ~~kI~iIG~G~mG~ala~~L~~~G~~V~~~~ 44 (335)
T 1z82_A 14 EMRFFVLGAGSWGTVFAQMLHENGEEVILWA 44 (335)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEEC
T ss_pred CCcEEEECcCHHHHHHHHHHHhCCCeEEEEe
Confidence 4679999999999999999999999999998
|
| >3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=84.04 E-value=2.2 Score=38.62 Aligned_cols=31 Identities=23% Similarity=0.273 Sum_probs=29.0
Q ss_pred eEEEEcCcHHHHHHHHHHHhCCCeEEEEeec
Q 008860 247 KIAIVGGGYIALEFAGIFSGLTSEVHVFIRQ 277 (551)
Q Consensus 247 ~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~ 277 (551)
+++|+|+|.+|..++..|.+.|.+|+++++.
T Consensus 2 ~iiIiG~G~~G~~la~~L~~~g~~v~vid~~ 32 (218)
T 3l4b_C 2 KVIIIGGETTAYYLARSMLSRKYGVVIINKD 32 (218)
T ss_dssp CEEEECCHHHHHHHHHHHHHTTCCEEEEESC
T ss_pred EEEEECCCHHHHHHHHHHHhCCCeEEEEECC
Confidence 5899999999999999999999999999874
|
| >1y7t_A Malate dehydrogenase; NAD-dependent-MDH-NADPH complex, oxidoreductase; HET: NDP; 1.65A {Thermus thermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1iz9_A* 2cvq_A* 1bmd_A* 1bdm_A* 1wze_A* 1wzi_A* | Back alignment and structure |
|---|
Probab=84.04 E-value=0.69 Score=45.17 Aligned_cols=33 Identities=18% Similarity=0.029 Sum_probs=29.0
Q ss_pred CCCccEEEECC-ChHHHHHHHHHHhCCC-------cEEEEc
Q 008860 70 HYDFDLFTIGA-GSGGVRASRFAANFGA-------SVAICE 102 (551)
Q Consensus 70 ~~~~dVvIIGg-G~aGl~aA~~l~~~G~-------~V~liE 102 (551)
.+..+|+|+|| |..|...+..|.+.|+ +|.++|
T Consensus 2 ~~~mkVlVtGaaGfIG~~l~~~L~~~g~~~~~~~~ev~l~D 42 (327)
T 1y7t_A 2 KAPVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLE 42 (327)
T ss_dssp CCCEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEEC
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHhCCCCCCCCCCEEEEEe
Confidence 33467999998 9999999999999886 899999
|
| >3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis} | Back alignment and structure |
|---|
Probab=83.90 E-value=1 Score=43.86 Aligned_cols=31 Identities=19% Similarity=0.201 Sum_probs=28.7
Q ss_pred CccEEEECCChHHHHHHHHHHhCCC-cEEEEc
Q 008860 72 DFDLFTIGAGSGGVRASRFAANFGA-SVAICE 102 (551)
Q Consensus 72 ~~dVvIIGgG~aGl~aA~~l~~~G~-~V~liE 102 (551)
..+|.|||+|..|.+.|..|+..|+ ++.|+|
T Consensus 5 ~~kI~iiGaG~vG~~~a~~l~~~~~~~v~l~D 36 (321)
T 3p7m_A 5 RKKITLVGAGNIGGTLAHLALIKQLGDVVLFD 36 (321)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCceEEEEe
Confidence 3589999999999999999999888 999999
|
| >1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A* | Back alignment and structure |
|---|
Probab=83.84 E-value=0.81 Score=47.00 Aligned_cols=30 Identities=23% Similarity=0.388 Sum_probs=29.0
Q ss_pred ccEEEECCChHHHHHHHHHHhCCCcEEEEc
Q 008860 73 FDLFTIGAGSGGVRASRFAANFGASVAICE 102 (551)
Q Consensus 73 ~dVvIIGgG~aGl~aA~~l~~~G~~V~liE 102 (551)
..|+|||+|..|...+..|.+.|.+|++++
T Consensus 13 ~~vlVvGgG~va~~k~~~L~~~ga~V~vi~ 42 (457)
T 1pjq_A 13 RDCLIVGGGDVAERKARLLLEAGARLTVNA 42 (457)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTBEEEEEE
T ss_pred CEEEEECCCHHHHHHHHHHHhCcCEEEEEc
Confidence 579999999999999999999999999999
|
| >3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A* | Back alignment and structure |
|---|
Probab=83.82 E-value=0.84 Score=46.29 Aligned_cols=30 Identities=17% Similarity=0.210 Sum_probs=28.2
Q ss_pred CccEEEECCChHHHHHHHHHHhCCCcEEEEc
Q 008860 72 DFDLFTIGAGSGGVRASRFAANFGASVAICE 102 (551)
Q Consensus 72 ~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE 102 (551)
.++|.|||.|..|+..|..|++ |++|+++|
T Consensus 36 ~mkIaVIGlG~mG~~lA~~La~-G~~V~~~D 65 (432)
T 3pid_A 36 FMKITISGTGYVGLSNGVLIAQ-NHEVVALD 65 (432)
T ss_dssp CCEEEEECCSHHHHHHHHHHHT-TSEEEEEC
T ss_pred CCEEEEECcCHHHHHHHHHHHc-CCeEEEEe
Confidence 4689999999999999999998 99999999
|
| >2qrj_A Saccharopine dehydrogenase, NAD+, L-lysine- forming; sulfate, rossmann fold, alpha-aminoadipate pathway, fungal lysine biosynthesis; 1.60A {Saccharomyces cerevisiae} PDB: 2qrk_A* 2qrl_A* 2q99_A 3ugk_A 3uh1_A* 3uha_A* | Back alignment and structure |
|---|
Probab=83.82 E-value=0.95 Score=45.05 Aligned_cols=30 Identities=23% Similarity=0.344 Sum_probs=28.7
Q ss_pred ccEEEECC-ChHHHHHHHHHHhCCC---cEEEEc
Q 008860 73 FDLFTIGA-GSGGVRASRFAANFGA---SVAICE 102 (551)
Q Consensus 73 ~dVvIIGg-G~aGl~aA~~l~~~G~---~V~liE 102 (551)
.+|+|||| |.+|+.|+..+...|. +|+++|
T Consensus 215 ~kV~ViG~~G~vG~~A~~~a~~lGa~~~~V~v~D 248 (394)
T 2qrj_A 215 PTVLIIGALGRCGSGAIDLLHKVGIPDANILKWD 248 (394)
T ss_dssp CCEEEETTTSHHHHHHHHHHHHTTCCGGGEEEEC
T ss_pred CeEEEEcCCCHHHHHHHHHHHhCCCCcCceEEee
Confidence 58999999 9999999999999998 999999
|
| >1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A* | Back alignment and structure |
|---|
Probab=83.81 E-value=0.78 Score=46.80 Aligned_cols=29 Identities=17% Similarity=0.170 Sum_probs=28.1
Q ss_pred cEEEECCChHHHHHHHHHHhCCCcEEEEc
Q 008860 74 DLFTIGAGSGGVRASRFAANFGASVAICE 102 (551)
Q Consensus 74 dVvIIGgG~aGl~aA~~l~~~G~~V~liE 102 (551)
+|.|||+|..|+..|..|++.|++|+++|
T Consensus 2 kI~VIG~G~vG~~~A~~la~~G~~V~~~d 30 (436)
T 1mv8_A 2 RISIFGLGYVGAVCAGCLSARGHEVIGVD 30 (436)
T ss_dssp EEEEECCSTTHHHHHHHHHHTTCEEEEEC
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEE
Confidence 59999999999999999999999999999
|
| >2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A* | Back alignment and structure |
|---|
Probab=83.75 E-value=0.67 Score=49.28 Aligned_cols=35 Identities=23% Similarity=0.313 Sum_probs=31.9
Q ss_pred CeEEEEcCcHHHHHHHHHHHhC------CCeEEEEeecCcc
Q 008860 246 EKIAIVGGGYIALEFAGIFSGL------TSEVHVFIRQKKV 280 (551)
Q Consensus 246 ~~vvViG~G~~g~e~a~~l~~~------g~~Vtlv~~~~~~ 280 (551)
-.|+|||+|+.|+.+|..|++. |.+|+++++.+.+
T Consensus 36 ~DVvIVGaG~aGlaaA~~La~~~~~~~~G~~V~vlEk~~~~ 76 (584)
T 2gmh_A 36 ADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAHI 76 (584)
T ss_dssp CSEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSSSST
T ss_pred CCEEEECcCHHHHHHHHHHHhcccccCCCCcEEEEeCCCCC
Confidence 4799999999999999999998 9999999998654
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 551 | ||||
| d1feca3 | 128 | d.87.1.1 (A:358-485) Trypanothione reductase {Crit | 2e-33 | |
| d3lada3 | 124 | d.87.1.1 (A:349-472) Dihydrolipoamide dehydrogenas | 1e-31 | |
| d1gesa1 | 217 | c.3.1.5 (A:3-146,A:263-335) Glutathione reductase | 1e-31 | |
| d1gesa1 | 217 | c.3.1.5 (A:3-146,A:263-335) Glutathione reductase | 3e-14 | |
| d1v59a3 | 123 | d.87.1.1 (A:356-478) Dihydrolipoamide dehydrogenas | 3e-30 | |
| d1h6va3 | 133 | d.87.1.1 (A:367-499) Mammalian thioredoxin reducta | 1e-29 | |
| d1dxla3 | 123 | d.87.1.1 (A:348-470) Dihydrolipoamide dehydrogenas | 1e-29 | |
| d1gesa3 | 115 | d.87.1.1 (A:336-450) Glutathione reductase {Escher | 8e-29 | |
| d1mo9a3 | 140 | d.87.1.1 (A:384-523) NADH-dependent 2-ketopropyl c | 2e-28 | |
| d1onfa3 | 119 | d.87.1.1 (A:377-495) Glutathione reductase {Plasmo | 3e-28 | |
| d3grsa3 | 115 | d.87.1.1 (A:364-478) Glutathione reductase {Human | 1e-27 | |
| d1onfa1 | 259 | c.3.1.5 (A:1-153,A:271-376) Glutathione reductase | 3e-26 | |
| d1onfa1 | 259 | c.3.1.5 (A:1-153,A:271-376) Glutathione reductase | 2e-08 | |
| d1ojta3 | 128 | d.87.1.1 (A:471-598) Dihydrolipoamide dehydrogenas | 6e-26 | |
| d1onfa2 | 117 | c.3.1.5 (A:154-270) Glutathione reductase {Plasmod | 1e-25 | |
| d1gesa2 | 116 | c.3.1.5 (A:147-262) Glutathione reductase {Escheri | 6e-25 | |
| d1ebda1 | 223 | c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehyd | 2e-24 | |
| d1ebda1 | 223 | c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehyd | 3e-15 | |
| d1ebda3 | 115 | d.87.1.1 (A:347-461) Dihydrolipoamide dehydrogenas | 3e-24 | |
| d3grsa1 | 221 | c.3.1.5 (A:18-165,A:291-363) Glutathione reductase | 4e-24 | |
| d3grsa1 | 221 | c.3.1.5 (A:18-165,A:291-363) Glutathione reductase | 4e-17 | |
| d1feca1 | 240 | c.3.1.5 (A:1-169,A:287-357) Trypanothione reductas | 5e-24 | |
| d1feca1 | 240 | c.3.1.5 (A:1-169,A:287-357) Trypanothione reductas | 2e-17 | |
| d1mo9a1 | 261 | c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketop | 8e-24 | |
| d1mo9a1 | 261 | c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketop | 4e-12 | |
| d1xdia2 | 118 | d.87.1.1 (A:349-466) Dihydrolipoamide dehydrogenas | 1e-23 | |
| d1h6va2 | 122 | c.3.1.5 (A:171-292) Mammalian thioredoxin reductas | 6e-22 | |
| d1v59a1 | 233 | c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehyd | 7e-22 | |
| d1v59a1 | 233 | c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehyd | 1e-17 | |
| d1lvla3 | 123 | d.87.1.1 (A:336-458) Dihydrolipoamide dehydrogenas | 9e-22 | |
| d1feca2 | 117 | c.3.1.5 (A:170-286) Trypanothione reductase {Crith | 1e-21 | |
| d1aoga2 | 117 | c.3.1.5 (A:170-286) Trypanothione reductase {Trypa | 2e-20 | |
| d1ojta1 | 229 | c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide deh | 3e-20 | |
| d1ojta1 | 229 | c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide deh | 2e-14 | |
| d1dxla1 | 221 | c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehyd | 4e-20 | |
| d1dxla1 | 221 | c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehyd | 5e-19 | |
| d1ojta2 | 125 | c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase | 3e-19 | |
| d1d7ya1 | 183 | c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredo | 8e-18 | |
| d1xhca2 | 122 | c.3.1.5 (A:104-225) NADH oxidase /nitrite reductas | 2e-17 | |
| d3grsa2 | 125 | c.3.1.5 (A:166-290) Glutathione reductase {Human ( | 3e-17 | |
| d1lvla1 | 220 | c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehyd | 7e-17 | |
| d1lvla1 | 220 | c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehyd | 4e-10 | |
| d1aoga1 | 238 | c.3.1.5 (A:3-169,A:287-357) Trypanothione reductas | 1e-16 | |
| d1aoga1 | 238 | c.3.1.5 (A:3-169,A:287-357) Trypanothione reductas | 2e-14 | |
| d3lada1 | 229 | c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehyd | 2e-16 | |
| d3lada1 | 229 | c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehyd | 2e-13 | |
| d1q1ra1 | 185 | c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductas | 4e-16 | |
| d1ebda2 | 117 | c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase | 7e-16 | |
| d1h6va1 | 235 | c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin | 9e-16 | |
| d1h6va1 | 235 | c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin | 6e-13 | |
| d1nhpa3 | 126 | d.87.1.1 (A:322-447) NADH peroxidase {Enterococcus | 2e-15 | |
| d1lvla2 | 115 | c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase | 2e-15 | |
| d3lada2 | 119 | c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase | 2e-15 | |
| d1v59a2 | 122 | c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase | 4e-14 | |
| d1d7ya2 | 121 | c.3.1.5 (A:116-236) NADH-dependent ferredoxin redu | 6e-14 | |
| d1nhpa1 | 198 | c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enter | 1e-12 | |
| d1dxla2 | 123 | c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase | 1e-12 | |
| d1m6ia2 | 137 | c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF | 1e-12 | |
| d1xdia1 | 233 | c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehyd | 1e-11 | |
| d1xdia1 | 233 | c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehyd | 2e-11 | |
| d1xhca1 | 167 | c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite | 2e-10 | |
| d1djqa2 | 156 | c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, | 3e-10 | |
| d1d5ta1 | 336 | c.3.1.3 (A:-2-291,A:389-431) Guanine nucleotide di | 2e-09 | |
| d1q1ra2 | 133 | c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseud | 2e-09 | |
| d1mo9a2 | 121 | c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl co | 1e-08 | |
| d1b5qa1 | 347 | c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Mai | 2e-08 | |
| d1rp0a1 | 278 | c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi | 2e-07 | |
| d1gtea4 | 196 | c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine de | 2e-05 | |
| d1vdca1 | 192 | c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase | 2e-05 | |
| d2gqfa1 | 253 | c.3.1.8 (A:1-194,A:343-401) Hypothetical protein H | 2e-05 | |
| d1fcda1 | 186 | c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulf | 5e-05 | |
| d1fl2a1 | 184 | c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide | 1e-04 | |
| d1fl2a1 | 184 | c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide | 0.003 | |
| d1trba1 | 190 | c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase | 4e-04 | |
| d2i0za1 | 251 | c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {B | 0.001 | |
| d1y0pa2 | 308 | c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 ( | 0.001 | |
| d1ps9a2 | 162 | c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-t | 0.002 | |
| d2bcgg1 | 297 | c.3.1.3 (G:5-301) Guanine nucleotide dissociation | 0.004 |
| >d1feca3 d.87.1.1 (A:358-485) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} Length = 128 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CO dehydrogenase flavoprotein C-domain-like superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain domain: Trypanothione reductase species: Crithidia fasciculata [TaxId: 5656]
Score = 121 bits (305), Expect = 2e-33
Identities = 50/122 (40%), Positives = 75/122 (61%), Gaps = 1/122 (0%)
Query: 413 YSAVPSAVFSQPPIGQVGLSEEQAIQEYGDIDVFTANFRPLKATLSGLPDRIFM-KLVLC 471
++ V AVFS PP+G G EE A ++Y + V+ ++F PL +SG + FM ++V
Sbjct: 1 HTKVACAVFSIPPMGVCGYVEEDAAKKYDQVAVYESSFTPLMHNISGSTYKKFMVRIVTN 60
Query: 472 AKTNKVLGLHMCGEDAPEIVQGFAVAVKAGLTKADFDATVGVHPTAAEEFVTLRTPTRKI 531
+VLG+HM G+ +PEI+Q A+ +K G +DF T+GVHPT+AEE ++RTP
Sbjct: 61 HADGEVLGVHMLGDSSPEIIQSVAICLKMGAKISDFYNTIGVHPTSAEELCSMRTPAYFY 120
Query: 532 RK 533
K
Sbjct: 121 EK 122
|
| >d3lada3 d.87.1.1 (A:349-472) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} Length = 124 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CO dehydrogenase flavoprotein C-domain-like superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain domain: Dihydrolipoamide dehydrogenase species: Azotobacter vinelandii [TaxId: 354]
Score = 116 bits (292), Expect = 1e-31
Identities = 33/109 (30%), Positives = 56/109 (51%)
Query: 413 YSAVPSAVFSQPPIGQVGLSEEQAIQEYGDIDVFTANFRPLKATLSGLPDRIFMKLVLCA 472
Y +P+ +++ P I VG +E+ E I+V F ++ F+K++ A
Sbjct: 1 YDLIPAVIYTHPEIAGVGKTEQALKAEGVAINVGVFPFAASGRAMAANDTAGFVKVIADA 60
Query: 473 KTNKVLGLHMCGEDAPEIVQGFAVAVKAGLTKADFDATVGVHPTAAEEF 521
KT++VLG+H+ G A E+VQ A+A++ G + D V HP +E
Sbjct: 61 KTDRVLGVHVIGPSAAELVQQGAIAMEFGTSAEDLGMMVFAHPALSEAL 109
|
| >d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]} Length = 217 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Score = 119 bits (299), Expect = 1e-31
Identities = 63/225 (28%), Positives = 99/225 (44%), Gaps = 22/225 (9%)
Query: 73 FDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLV 132
+D IG GSGG+ + AA +G A+ E +GGTCV GCVPKK++
Sbjct: 3 YDYIAIGGGSGGIASINRAAMYGQKCALIE----------AKELGGTCVNVGCVPKKVMW 52
Query: 133 YASKFSHEFDESNGFGWKYGTEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIEGR 192
+A++ T + +W TLIA++ A + R+ Y+N+L + +I+G
Sbjct: 53 HAAQIREAIHMYGPDYGFDTTINKFNWETLIASRTAYIDRIHTSYENVLGKNNVDVIKGF 112
Query: 193 GKIVDPHTVDVDGKLYSARHILISVGGRPFIPDIPGSEYAIDSDAALDLPSK-------- 244
+ VD T++V+G+ +A HILI+ GGRP P P ++ A + K
Sbjct: 113 ARFVDAKTLEVNGETITADHILIATGGRPSHPREPANDNINLEAAGVKTNEKGYIVVDKY 172
Query: 245 ----PEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFD 285
E I VG A+E + + + K D
Sbjct: 173 QNTNIEGIYAVGDNTGAVELTPVAVAAGRRLSERLFNNKPDEHLD 217
|
| >d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]} Length = 217 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Score = 69.6 bits (169), Expect = 3e-14
Identities = 30/71 (42%), Positives = 41/71 (57%)
Query: 341 RRPNTKNLGLEKVGVKMTKNGAIEVDEYSGTAVPSIWAVGDVTDRINLTPVALMEGGALA 400
R P N+ LE GVK + G I VD+Y T + I+AVGD T + LTPVA+ G L+
Sbjct: 145 REPANDNINLEAAGVKTNEKGYIVVDKYQNTNIEGIYAVGDNTGAVELTPVAVAAGRRLS 204
Query: 401 KTLFQAEPTKP 411
+ LF +P +
Sbjct: 205 ERLFNNKPDEH 215
|
| >d1v59a3 d.87.1.1 (A:356-478) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 123 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CO dehydrogenase flavoprotein C-domain-like superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain domain: Dihydrolipoamide dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 112 bits (281), Expect = 3e-30
Identities = 30/109 (27%), Positives = 55/109 (50%)
Query: 413 YSAVPSAVFSQPPIGQVGLSEEQAIQEYGDIDVFTANFRPLKATLSGLPDRIFMKLVLCA 472
Y+ +PS ++S P + VG +EEQ + D + F + F+K+++ +
Sbjct: 1 YNNIPSVMYSHPEVAWVGKTEEQLKEAGIDYKIGKFPFAANSRAKTNQDTEGFVKILIDS 60
Query: 473 KTNKVLGLHMCGEDAPEIVQGFAVAVKAGLTKADFDATVGVHPTAAEEF 521
KT ++LG H+ G +A E++ +A++ G + D HPT +E F
Sbjct: 61 KTERILGAHIIGPNAGEMIAEAGLALEYGASAEDVARVCHAHPTLSEAF 109
|
| >d1h6va3 d.87.1.1 (A:367-499) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 133 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CO dehydrogenase flavoprotein C-domain-like superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain domain: Mammalian thioredoxin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 111 bits (278), Expect = 1e-29
Identities = 44/121 (36%), Positives = 69/121 (57%), Gaps = 4/121 (3%)
Query: 413 YSAVPSAVFSQPPIGQVGLSEEQAIQEYGDIDV--FTANFRPLKATLSGLPDRI--FMKL 468
Y VP+ VF+ G GLSEE+A++++G+ ++ + + F PL+ T+ + +
Sbjct: 1 YDNVPTTVFTPLEYGCCGLSEEKAVEKFGEENIEVYHSFFWPLEWTVPSRDNNKCYAKVI 60
Query: 469 VLCAKTNKVLGLHMCGEDAPEIVQGFAVAVKAGLTKADFDATVGVHPTAAEEFVTLRTPT 528
+V+G H+ G +A E+ QGFA A+K GLTK D+T+G+HP AE F TL
Sbjct: 61 CNLKDNERVVGFHVLGPNAGEVTQGFAAALKCGLTKQQLDSTIGIHPVCAEIFTTLSVTK 120
Query: 529 R 529
R
Sbjct: 121 R 121
|
| >d1dxla3 d.87.1.1 (A:348-470) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} Length = 123 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CO dehydrogenase flavoprotein C-domain-like superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain domain: Dihydrolipoamide dehydrogenase species: Garden pea (Pisum sativum) [TaxId: 3888]
Score = 110 bits (277), Expect = 1e-29
Identities = 27/109 (24%), Positives = 50/109 (45%)
Query: 413 YSAVPSAVFSQPPIGQVGLSEEQAIQEYGDIDVFTANFRPLKATLSGLPDRIFMKLVLCA 472
Y VP V++ P + VG +EEQ + + V F + +K++
Sbjct: 1 YDKVPGVVYTNPEVASVGKTEEQVKETGVEYRVGKFPFMANSRAKAIDNAEGLVKIIAEK 60
Query: 473 KTNKVLGLHMCGEDAPEIVQGFAVAVKAGLTKADFDATVGVHPTAAEEF 521
+T+K+LG+H+ +A E++ A+A++ + D HPT +E
Sbjct: 61 ETDKILGVHIMAPNAGELIHEAAIALQYDASSEDIARVCHAHPTMSEAI 109
|
| >d1gesa3 d.87.1.1 (A:336-450) Glutathione reductase {Escherichia coli [TaxId: 562]} Length = 115 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CO dehydrogenase flavoprotein C-domain-like superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Score = 108 bits (270), Expect = 8e-29
Identities = 56/115 (48%), Positives = 76/115 (66%), Gaps = 2/115 (1%)
Query: 413 YSAVPSAVFSQPPIGQVGLSEEQAIQEYGD--IDVFTANFRPLKATLSGLPDRIFMKLVL 470
YS +P+ VFS PPIG VGL+E QA ++YGD + V+ ++F + ++ MKLV
Sbjct: 1 YSNIPTVVFSHPPIGTVGLTEPQAREQYGDDQVKVYKSSFTAMYTAVTTHRQPCRMKLVC 60
Query: 471 CAKTNKVLGLHMCGEDAPEIVQGFAVAVKAGLTKADFDATVGVHPTAAEEFVTLR 525
K++G+H G E++QGFAVA+K G TK DFD TV +HPTAAEEFVT+R
Sbjct: 61 VGSEEKIVGIHGIGFGMDEMLQGFAVALKMGATKKDFDNTVAIHPTAAEEFVTMR 115
|
| >d1mo9a3 d.87.1.1 (A:384-523) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} Length = 140 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CO dehydrogenase flavoprotein C-domain-like superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase species: Xanthobacter sp., py2 [TaxId: 35809]
Score = 108 bits (270), Expect = 2e-28
Identities = 32/136 (23%), Positives = 51/136 (37%), Gaps = 18/136 (13%)
Query: 415 AVPSAVFSQPPIGQVGLSEEQAIQEYGDIDV-----FTANFRPLKATLSGLP-------- 461
P + + + +G+ EE+A +I T N + S
Sbjct: 3 NYPDFLHTHYEVSFLGMGEEEARAAGHEIVTIKMPPDTENGLNVALPASDRTMLYAFGKG 62
Query: 462 ---DRIFMKLVLCAKTNKVLGLHMCGEDAPEIVQGFAVAVKAGLTKADFDATVGV--HPT 516
F K+V+ AKT KVLG H G A + Q V +K GLT + + +PT
Sbjct: 63 TAHMSGFQKIVIDAKTRKVLGAHHVGYGAKDAFQYLNVLIKQGLTVDELGDMDELFLNPT 122
Query: 517 AAEEFVTLRTPTRKIR 532
+ LR ++ +
Sbjct: 123 HFIQLSRLRAGSKNLV 138
|
| >d1onfa3 d.87.1.1 (A:377-495) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} Length = 119 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CO dehydrogenase flavoprotein C-domain-like superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain domain: Glutathione reductase species: Plasmodium falciparum [TaxId: 5833]
Score = 106 bits (266), Expect = 3e-28
Identities = 58/119 (48%), Positives = 76/119 (63%), Gaps = 6/119 (5%)
Query: 413 YSAVPSAVFSQPPIGQVGLSEEQAIQEYGDIDV------FTANFRPLKATLSGLPDRIFM 466
Y +P+ +FS PPIG +GLSEE AIQ YG +V FT F + L ++ ++
Sbjct: 1 YKLIPTVIFSHPPIGTIGLSEEAAIQIYGKENVKIYESKFTNLFFSVYDIEPELKEKTYL 60
Query: 467 KLVLCAKTNKVLGLHMCGEDAPEIVQGFAVAVKAGLTKADFDATVGVHPTAAEEFVTLR 525
KLV K + GLH+ G +A EIVQGFAVA+K TK DFD T+ +HPTAAEEF+TL+
Sbjct: 61 KLVCVGKDELIKGLHIIGLNADEIVQGFAVALKMNATKKDFDETIPIHPTAAEEFLTLQ 119
|
| >d3grsa3 d.87.1.1 (A:364-478) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} Length = 115 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CO dehydrogenase flavoprotein C-domain-like superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain domain: Glutathione reductase species: Human (Homo sapiens) [TaxId: 9606]
Score = 104 bits (261), Expect = 1e-27
Identities = 56/115 (48%), Positives = 79/115 (68%), Gaps = 2/115 (1%)
Query: 413 YSAVPSAVFSQPPIGQVGLSEEQAIQEYGDID--VFTANFRPLKATLSGLPDRIFMKLVL 470
Y+ +P+ VFS PPIG VGL+E++AI +YG + ++ +F P+ ++ + MK+V
Sbjct: 1 YNNIPTVVFSHPPIGTVGLTEDEAIHKYGIENVKTYSTSFTPMYHAVTKRKTKCVMKMVC 60
Query: 471 CAKTNKVLGLHMCGEDAPEIVQGFAVAVKAGLTKADFDATVGVHPTAAEEFVTLR 525
K KV+G+HM G E++QGFAVAVK G TKADFD TV +HPT++EE VTLR
Sbjct: 61 ANKEEKVVGIHMQGLGCDEMLQGFAVAVKMGATKADFDNTVAIHPTSSEELVTLR 115
|
| >d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} Length = 259 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Plasmodium falciparum [TaxId: 5833]
Score = 105 bits (262), Expect = 3e-26
Identities = 57/293 (19%), Positives = 109/293 (37%), Gaps = 56/293 (19%)
Query: 73 FDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLV 132
+DL IG GSGG+ A+R AA A VA+ E +GGTCV GCVPKK++
Sbjct: 2 YDLIVIGGGSGGMAAARRAARHNAKVALVE----------KSRLGGTCVNVGCVPKKIMF 51
Query: 133 YASKFSHEFDESNGFGWKYGTEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIEGR 192
A+ + S +G+ + + L+ ++ +QRL IY+ L + L EG
Sbjct: 52 NAASVHDILENSRHYGFDT--KFSFNLPLLVERRDKYIQRLNNIYRQNLSKDKVDLYEGT 109
Query: 193 GKI--------------VDPHTVDVDGKLYSARHILISVGGRPFI-----PDIPGSEYAI 233
+ ++ ++ R+ILI+VG +P ++ + +
Sbjct: 110 ASFLSENRILIKGTKDNNNKDNGPLNEEILEGRNILIAVGNKPVGRSPDTENLKLEKLNV 169
Query: 234 DSDAALDLPSKPEKIAIVGGGYI--ALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRDF 291
+++ + + ++ ++ + + +++ L + D
Sbjct: 170 ETNNNYIVVDENQRTSVNNIYAVGDCCMVKKSKEIEDLNLLKLYNEERYLNKKENVTED- 228
Query: 292 VAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPN 344
I ++ + +P AI G L + R+ N
Sbjct: 229 ---------IFYNVQLTPVAI---NAGRLLAD----------RLFLKKTRKTN 259
|
| >d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} Length = 259 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Plasmodium falciparum [TaxId: 5833]
Score = 53.1 bits (126), Expect = 2e-08
Identities = 21/112 (18%), Positives = 42/112 (37%), Gaps = 8/112 (7%)
Query: 332 FSHVMFATGRRPNTKNLGLEKVGVKMT----KNGAIEVDEYSGTAVPSIWAVGDVTDRIN 387
+++ A G +P ++ E + ++ N I VDE T+V +I+AVGD
Sbjct: 141 GRNILIAVGNKPVGRSPDTENLKLEKLNVETNNNYIVVDENQRTSVNNIYAVGDCCMVKK 200
Query: 388 LTPVALMEGGALAKTLFQAEPTKPDYSAVPSAVFSQPPIGQVGLSEEQAIQE 439
+ L+ E V +F + V ++ + + +
Sbjct: 201 SKEIE----DLNLLKLYNEERYLNKKENVTEDIFYNVQLTPVAINAGRLLAD 248
|
| >d1ojta3 d.87.1.1 (A:471-598) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} Length = 128 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CO dehydrogenase flavoprotein C-domain-like superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain domain: Dihydrolipoamide dehydrogenase species: Neisseria meningitidis [TaxId: 487]
Score = 100 bits (250), Expect = 6e-26
Identities = 24/107 (22%), Positives = 47/107 (43%)
Query: 415 AVPSAVFSQPPIGQVGLSEEQAIQEYGDIDVFTANFRPLKATLSGLPDRIFMKLVLCAKT 474
+P ++ P + VG +E A I + ++ D+ F KL+ A+T
Sbjct: 3 VIPGVAYTSPEVAWVGETELSAKASARKITKANFPWAASGRAIANGCDKPFTKLIFDAET 62
Query: 475 NKVLGLHMCGEDAPEIVQGFAVAVKAGLTKADFDATVGVHPTAAEEF 521
+++G + G + +++ +A++ G AD T+ HPT E
Sbjct: 63 GRIIGGGIVGPNGGDMIGEVCLAIEMGCDAADIGKTIHPHPTLGESI 109
|
| >d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} Length = 117 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Plasmodium falciparum [TaxId: 5833]
Score = 99.4 bits (247), Expect = 1e-25
Identities = 36/116 (31%), Positives = 58/116 (50%), Gaps = 2/116 (1%)
Query: 224 PDIPGSEYAIDSDAALDLPSKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRG 283
P + G E I SD ++ + +KI IVG GYIA+E + L + ++F R ++LR
Sbjct: 2 PPVKGIENTISSDEFFNIK-ESKKIGIVGSGYIAVELINVIKRLGIDSYIFARGNRILRK 60
Query: 284 FDEDIRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTNKG-TVDGFSHVMFA 338
FDE + + + M I T I K +D +LS+ + G + F HV++
Sbjct: 61 FDESVINVLENDMKKNNINIVTFADVVEIKKVSDKNLSIHLSDGRIYEHFDHVIYC 116
|
| >d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]} Length = 116 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Score = 97.5 bits (242), Expect = 6e-25
Identities = 46/116 (39%), Positives = 71/116 (61%)
Query: 225 DIPGSEYAIDSDAALDLPSKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGF 284
DIPG EY IDSD LP+ PE++A+VG GYI +E G+ +GL ++ H+F L F
Sbjct: 1 DIPGVEYGIDSDGFFALPALPERVAVVGAGYIGVELGGVINGLGAKTHLFEMFDAPLPSF 60
Query: 285 DEDIRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATG 340
D I + + E M+ G + HT P+A++K+TDGSL+++ G + +++A G
Sbjct: 61 DPMISETLVEVMNAEGPQLHTNAIPKAVVKNTDGSLTLELEDGRSETVDCLIWAIG 116
|
| >d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Length = 223 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Score = 99.2 bits (246), Expect = 2e-24
Identities = 35/82 (42%), Positives = 48/82 (58%), Gaps = 1/82 (1%)
Query: 332 FSHVMFATGRRPNTKNLGLEKVGVKMTKNGAIEVDEYSGTAVPSIWAVGDVTDRINLTPV 391
S + GRRPNT LGLE++G+KMT G IEVD+ T+VP+I+A+GD+ L
Sbjct: 142 GSRPIELVGRRPNTDELGLEQIGIKMTNRGLIEVDQQCRTSVPNIFAIGDIVPGPALAHK 201
Query: 392 ALMEGGALAKTLFQAEPTKPDY 413
A EG A+ + P+ DY
Sbjct: 202 ASYEGKVAAEAIA-GHPSAVDY 222
|
| >d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Length = 223 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Score = 73.0 bits (178), Expect = 3e-15
Identities = 39/156 (25%), Positives = 68/156 (43%), Gaps = 15/156 (9%)
Query: 71 YDFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKL 130
+ + +GAG GG A+ AA G V I E G +GG C+ GC+P K
Sbjct: 2 IETETLVVGAGPGGYVAAIRAAQLGQKVTIVE----------KGNLGGVCLNVGCIPSKA 51
Query: 131 LVYASKFSHEFDESNGFGWKYGTEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIE 190
L+ AS + S D++ + K + +++LTG + +L + +++
Sbjct: 52 LISASHRYEQAKHSEEM-GIKAENVTIDFAKVQEWKASVVKKLTGGVEGLLKGNKVEIVK 110
Query: 191 GRGKIVDPHT----VDVDGKLYSARHILISVGGRPF 222
G VD +T + Y+ ++ +I+ G RP
Sbjct: 111 GEAYFVDANTVRVVNGDSAQTYTFKNAIIATGSRPI 146
|
| >d1ebda3 d.87.1.1 (A:347-461) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Length = 115 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CO dehydrogenase flavoprotein C-domain-like superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain domain: Dihydrolipoamide dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Score = 95.5 bits (237), Expect = 3e-24
Identities = 32/105 (30%), Positives = 52/105 (49%)
Query: 415 AVPSAVFSQPPIGQVGLSEEQAIQEYGDIDVFTANFRPLKATLSGLPDRIFMKLVLCAKT 474
A+P+ VFS P VG E+QA E D+ F L+ F+KLV+ +
Sbjct: 1 AIPAVVFSDPECASVGYFEQQAKDEGIDVIAAKFPFAANGRALALNDTDGFLKLVVRKED 60
Query: 475 NKVLGLHMCGEDAPEIVQGFAVAVKAGLTKADFDATVGVHPTAAE 519
++G + G +A +++ +A++AG+T D T+ HPT E
Sbjct: 61 GVIIGAQIIGPNASDMIAELGLAIEAGMTAEDIALTIHAHPTLGE 105
|
| >d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} Length = 221 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Human (Homo sapiens) [TaxId: 9606]
Score = 98.8 bits (245), Expect = 4e-24
Identities = 40/144 (27%), Positives = 56/144 (38%), Gaps = 3/144 (2%)
Query: 270 EVHVFIRQKKVLRGFDEDIRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTNKGTV 329
V R V R + + + I H + +
Sbjct: 80 RVIKEKRDAYVSRLNAIYQNNLTKSHIEI--IRGHAAFTSDPKPTIEVSGKKYTAPHILI 137
Query: 330 DGFSHVMFATGRRPNTKNLGLEKVGVKMTKNGAIEVDEYSGTAVPSIWAVGDVTDRINLT 389
R PNTK+L L K+G++ G I VDE+ T V I+AVGDV + LT
Sbjct: 138 ATGGMPSTPHERVPNTKDLSLNKLGIQTDDKGHIIVDEFQNTNVKGIYAVGDVCGKALLT 197
Query: 390 PVALMEGGALAKTLFQAEP-TKPD 412
PVA+ G LA LF+ + +K D
Sbjct: 198 PVAIAAGRKLAHRLFEYKEDSKLD 221
|
| >d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} Length = 221 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Human (Homo sapiens) [TaxId: 9606]
Score = 78.4 bits (192), Expect = 4e-17
Identities = 52/157 (33%), Positives = 77/157 (49%), Gaps = 13/157 (8%)
Query: 71 YDFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKL 130
+D IG GSGG+ ++R AA GA A+ E + +GGTCV GCVPKK+
Sbjct: 2 ASYDYLVIGGGSGGLASARRAAELGARAAVVE----------SHKLGGTCVNVGCVPKKV 51
Query: 131 LVYASKFSHEFDESNGFGWKYGTEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIE 190
+ + S + + E + +W + ++A + RL IY+N L + I +I
Sbjct: 52 MWNTAVHSEFMHDHADY-GFPSCEGKFNWRVIKEKRDAYVSRLNAIYQNNLTKSHIEIIR 110
Query: 191 GRGKIVDPH--TVDVDGKLYSARHILISVGGRPFIPD 225
G T++V GK Y+A HILI+ GG P P
Sbjct: 111 GHAAFTSDPKPTIEVSGKKYTAPHILIATGGMPSTPH 147
|
| >d1feca1 c.3.1.5 (A:1-169,A:287-357) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Crithidia fasciculata [TaxId: 5656]
Score = 98.9 bits (245), Expect = 5e-24
Identities = 41/90 (45%), Positives = 54/90 (60%), Gaps = 8/90 (8%)
Query: 331 GFSHVMFATGRRPNTK--------NLGLEKVGVKMTKNGAIEVDEYSGTAVPSIWAVGDV 382
+++ ATG P L LEK GV++ KNGAI+VD YS T V +I+A+GDV
Sbjct: 151 DTEYILLATGSWPQHLGIEVPRSQTLQLEKAGVEVAKNGAIKVDAYSKTNVDNIYAIGDV 210
Query: 383 TDRINLTPVALMEGGALAKTLFQAEPTKPD 412
TDR+ LTPVA+ EG A T+F +P D
Sbjct: 211 TDRVMLTPVAINEGAAFVDTVFANKPRATD 240
|
| >d1feca1 c.3.1.5 (A:1-169,A:287-357) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Crithidia fasciculata [TaxId: 5656]
Score = 79.6 bits (195), Expect = 2e-17
Identities = 51/202 (25%), Positives = 78/202 (38%), Gaps = 18/202 (8%)
Query: 71 YDFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKL 130
+DL IGAGSGG+ A AA+ +GGTCV GCVPKKL
Sbjct: 2 RAYDLVVIGAGSGGLEAGWNAASLHKKRVAVIDLQKHHGPPHYAALGGTCVNVGCVPKKL 61
Query: 131 LVYASKFSHEFDESNGFGWKYGTEPQH-DWSTLIANKNAELQRLTGIYKNILI-NAGITL 188
+V + + ES GFGW+ E +W LIA KN + + Y+ + G+T
Sbjct: 62 MVTGANYMDTIRESAGFGWELDRESVRPNWKALIAAKNKAVSGINDSYEGMFADTEGLTF 121
Query: 189 IEGRGKIV---------DPHTVDVDGKLYSARHILISVGGRPFIPDIPGSEYAIDSDAAL 239
+G G + + +IL++ G P I+ +
Sbjct: 122 HQGFGALQDNHTVLVRESADPNSAVLETLDTEYILLATGSWP-------QHLGIEVPRSQ 174
Query: 240 DLPSKPEKIAIVGGGYIALEFA 261
L + + + G I ++
Sbjct: 175 TLQLEKAGVEVAKNGAIKVDAY 196
|
| >d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} Length = 261 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase species: Xanthobacter sp., py2 [TaxId: 35809]
Score = 98.9 bits (245), Expect = 8e-24
Identities = 38/197 (19%), Positives = 74/197 (37%), Gaps = 13/197 (6%)
Query: 71 YDFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKL 130
++D IG G+ G S + G I + +GG+C CVP L
Sbjct: 41 REYDAIFIGGGAAGRFGSAYLRAMGGRQLIVDR---------WPFLGGSCPHNACVPHHL 91
Query: 131 LVYASKFSHEFDESNGF-GWKYGTEPQHDWSTLIANKNAELQRLTGI--YKNILINAGIT 187
+ +G + TE ++ A GI +++
Sbjct: 92 FSDCAAELMLARTFSGQYWFPDMTEKVVGIKEVVDLFRAGRNGPHGIMNFQSKEQLNLEY 151
Query: 188 LIEGRGKIVDPHTVDVDGKLYSARHILISVGGRPFIPDIPGSEYAIDSDAALDLPSKPEK 247
++ K++D HTV+ GK++ A++++++VG P D+P + + L L K
Sbjct: 152 ILNCPAKVIDNHTVEAAGKVFKAKNLILAVGAGPGTLDVPEQPRSAELAKILGLD-LGPK 210
Query: 248 IAIVGGGYIALEFAGIF 264
++ Y+ ++
Sbjct: 211 GEVLVNEYLQTSVPNVY 227
|
| >d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} Length = 261 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase species: Xanthobacter sp., py2 [TaxId: 35809]
Score = 64.2 bits (155), Expect = 4e-12
Identities = 29/210 (13%), Positives = 54/210 (25%), Gaps = 53/210 (25%)
Query: 248 IAIVGGGYIALEFAGIFSGLTSEVHVFIRQK----------------------------- 278
+GGG + + + R
Sbjct: 45 AIFIGGGAAGRFGSAYLRAMGGRQLIVDRWPFLGGSCPHNACVPHHLFSDCAAELMLART 104
Query: 279 -----------KVLRGFDEDIRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTNKG 327
+ + G E + F A + GI + + + V N
Sbjct: 105 FSGQYWFPDMTEKVVGIKEVVDLFRAGRNGPHGIMNFQSKEQLNLEYILNCPAKVIDNHT 164
Query: 328 TVDGFSHVMFAT-----GRRPNTKNLGLEKVG--------VKMTKNGAIEVDEYSGTAVP 374
G P T ++ + + + G + V+EY T+VP
Sbjct: 165 VEAAGKVFKAKNLILAVGAGPGTLDVPEQPRSAELAKILGLDLGPKGEVLVNEYLQTSVP 224
Query: 375 SIWAVGDVTDRINLTPVALMEGGALAKTLF 404
+++AVGD+ A G A+ +
Sbjct: 225 NVYAVGDLIGGPMEMFKARKSGCYAARNVM 254
|
| >d1xdia2 d.87.1.1 (A:349-466) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 118 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CO dehydrogenase flavoprotein C-domain-like superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain domain: Dihydrolipoamide dehydrogenase species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 94.0 bits (233), Expect = 1e-23
Identities = 23/107 (21%), Positives = 41/107 (38%)
Query: 415 AVPSAVFSQPPIGQVGLSEEQAIQEYGDIDVFTANFRPLKATLSGLPDRIFMKLVLCAKT 474
V + VF++P I VG+ + R F+K+ T
Sbjct: 3 TVAATVFTRPEIAAVGVPQSVIDAGSVAARTIMLPLRTNARAKMSEMRHGFVKIFCRRST 62
Query: 475 NKVLGLHMCGEDAPEIVQGFAVAVKAGLTKADFDATVGVHPTAAEEF 521
V+G + A E++ AVAV+ +T + T+ V+P+ +
Sbjct: 63 GVVIGGVVVAPIASELILPIAVAVQNRITVNELAQTLAVYPSLSGSI 109
|
| >d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 122 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Mammalian thioredoxin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 89.0 bits (220), Expect = 6e-22
Identities = 43/123 (34%), Positives = 61/123 (49%), Gaps = 10/123 (8%)
Query: 227 PG-SEYAIDSDAALDLPSKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFD 285
PG EY I SD LP P K +VG Y+ALE AG +G+ +V V +R LRGFD
Sbjct: 1 PGDKEYCISSDDLFSLPYCPGKTLVVGASYVALECAGFLAGIGLDVTVMVRSIL-LRGFD 59
Query: 286 EDIRDFVAEQMSLRGIEFHTEESPQAILKSTDGS--------LSVKTNKGTVDGFSHVMF 337
+D+ + + E M GI+F + P I + G+ S + + D F+ V+
Sbjct: 60 QDMANKIGEHMEEHGIKFIRQFVPTKIEQIEAGTPGRLKVTAKSTNSEETIEDEFNTVLL 119
Query: 338 ATG 340
A G
Sbjct: 120 AVG 122
|
| >d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 233 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 92.3 bits (228), Expect = 7e-22
Identities = 47/236 (19%), Positives = 83/236 (35%), Gaps = 35/236 (14%)
Query: 70 HYDFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKK 129
+ D+ IG G G A+ AA G + A E G +GGTC+ GC+P K
Sbjct: 3 NKSHDVVIIGGGPAGYVAAIKAAQLGFNTACV---------EKRGKLGGTCLNVGCIPSK 53
Query: 130 LLVYASKFSHE-FDESNGFGWKYGTEPQHDWSTLIANKNAELQRLTGIYKNILINAGITL 188
L+ S H+ E+ G + + + + K+ +++LTG + + +T
Sbjct: 54 ALLNNSHLFHQMHTEAQKRGIDVNGDIKINVANFQKAKDDAVKQLTGGIELLFKKNKVTY 113
Query: 189 IEGRGKIVDPHTVDVDGK-----------LYSARHILI--------SVGGRPFIPDIPGS 229
+G G D + V + ++I++ VG RP+I +
Sbjct: 114 YKGNGSFEDETKIRVTPVDGLEGTVKEDHILDVKNIIVATGSEVTPFVGRRPYIAGLGAE 173
Query: 230 EYAIDSD------AALDLPSKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKK 279
+ ++ D SK I +VG A ++
Sbjct: 174 KIGLEVDKRGRLVIDDQFNSKFPHIKVVGDVTFGPMLAHKAEEEGIAAVEMLKTGH 229
|
| >d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 233 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 80.3 bits (197), Expect = 1e-17
Identities = 28/80 (35%), Positives = 37/80 (46%)
Query: 329 VDGFSHVMFATGRRPNTKNLGLEKVGVKMTKNGAIEVDEYSGTAVPSIWAVGDVTDRINL 388
V S V GRRP LG EK+G+++ K G + +D+ + P I VGDVT L
Sbjct: 151 VATGSEVTPFVGRRPYIAGLGAEKIGLEVDKRGRLVIDDQFNSKFPHIKVVGDVTFGPML 210
Query: 389 TPVALMEGGALAKTLFQAEP 408
A EG A + L
Sbjct: 211 AHKAEEEGIAAVEMLKTGHG 230
|
| >d1lvla3 d.87.1.1 (A:336-458) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} Length = 123 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CO dehydrogenase flavoprotein C-domain-like superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain domain: Dihydrolipoamide dehydrogenase species: Pseudomonas putida [TaxId: 303]
Score = 88.6 bits (219), Expect = 9e-22
Identities = 28/106 (26%), Positives = 46/106 (43%)
Query: 414 SAVPSAVFSQPPIGQVGLSEEQAIQEYGDIDVFTANFRPLKATLSGLPDRIFMKLVLCAK 473
+A+ + F+ P + VG + EQA Q+ D V F +S F+++V
Sbjct: 2 AAIAAVCFTDPEVVVVGKTPEQASQQGLDCIVAQFPFAANGRAMSLESKSGFVRVVARRD 61
Query: 474 TNKVLGLHMCGEDAPEIVQGFAVAVKAGLTKADFDATVGVHPTAAE 519
+ +LG G E+ FA +++ G D T+ HPT E
Sbjct: 62 NHLILGWQAVGVAVSELSTAFAQSLEMGACLEDVAGTIHAHPTLGE 107
|
| >d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} Length = 117 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Crithidia fasciculata [TaxId: 5656]
Score = 88.3 bits (218), Expect = 1e-21
Identities = 43/117 (36%), Positives = 62/117 (52%), Gaps = 3/117 (2%)
Query: 228 GSEYAIDSDAALDLPSKPEKIAIVGGGYIALEFAGIFSGLT---SEVHVFIRQKKVLRGF 284
G + I S+ A L P++ VGGGYI++EFAGIF+ +V + R +LRGF
Sbjct: 1 GDDLCITSNEAFYLDEAPKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMILRGF 60
Query: 285 DEDIRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGR 341
D ++R + EQ+ GI T E+P + K+ DG+ V G + VM A GR
Sbjct: 61 DSELRKQLTEQLRANGINVRTHENPAKVTKNADGTRHVVFESGAEADYDVVMLAIGR 117
|
| >d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]} Length = 117 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Trypanosoma cruzi [TaxId: 5693]
Score = 84.8 bits (209), Expect = 2e-20
Identities = 45/116 (38%), Positives = 68/116 (58%), Gaps = 3/116 (2%)
Query: 226 IPGSEYAIDSDAALDLPSKPEKIAIVGGGYIALEFAGIFS---GLTSEVHVFIRQKKVLR 282
IPG E+ I S+ A LP P ++ VGGG+I++EFAGIF+ +V + R + +LR
Sbjct: 1 IPGIEHCISSNEAFYLPEPPRRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGEMILR 60
Query: 283 GFDEDIRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFA 338
GFD +R+ + +Q++ GI+ T+E+P + + DGS SV G F VM A
Sbjct: 61 GFDHTLREELTKQLTANGIQILTKENPAKVELNADGSKSVTFESGKKMDFDLVMMA 116
|
| >d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Neisseria meningitidis [TaxId: 487]
Score = 87.3 bits (215), Expect = 3e-20
Identities = 41/132 (31%), Positives = 64/132 (48%), Gaps = 10/132 (7%)
Query: 69 SHYDFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPK 128
+ ++D+ +G G GG A+ AA+ G VAI E +GG C+ GC+P
Sbjct: 3 ADAEYDVVVLGGGPGGYSAAFAAADEGLKVAIV---------ERYKTLGGVCLNVGCIPS 53
Query: 129 KLLVYASKFSHEFDESNGFGWKYGTEPQHDWSTLIANKNAELQRLTGIYKNILINAGITL 188
K L++ + E G KY EP+ D L A K+ + RLTG + + + +
Sbjct: 54 KALLHNAAVIDEVRHLAANGIKYP-EPELDIDMLRAYKDGVVSRLTGGLAGMAKSRKVDV 112
Query: 189 IEGRGKIVDPHT 200
I+G G+ +DPH
Sbjct: 113 IQGDGQFLDPHH 124
|
| >d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Neisseria meningitidis [TaxId: 487]
Score = 70.7 bits (172), Expect = 2e-14
Identities = 27/70 (38%), Positives = 38/70 (54%)
Query: 335 VMFATGRRPNTKNLGLEKVGVKMTKNGAIEVDEYSGTAVPSIWAVGDVTDRINLTPVALM 394
++ A R PN K + EK GV +T G IEVD+ T VP I+A+GD+ + L A+
Sbjct: 153 IIAAGSRAPNGKLISAEKAGVAVTDRGFIEVDKQMRTNVPHIYAIGDIVGQPMLAHKAVH 212
Query: 395 EGGALAKTLF 404
EG A+
Sbjct: 213 EGHVAAENCA 222
|
| >d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} Length = 221 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Garden pea (Pisum sativum) [TaxId: 3888]
Score = 86.8 bits (214), Expect = 4e-20
Identities = 25/67 (37%), Positives = 34/67 (50%)
Query: 338 ATGRRPNTKNLGLEKVGVKMTKNGAIEVDEYSGTAVPSIWAVGDVTDRINLTPVALMEGG 397
GR P T L L+K+GV+ K G I V+E T V ++A+GDV L A +G
Sbjct: 148 VKGRTPFTSGLNLDKIGVETDKLGRILVNERFSTNVSGVYAIGDVIPGPMLAHKAEEDGV 207
Query: 398 ALAKTLF 404
A + L
Sbjct: 208 ACVEYLA 214
|
| >d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} Length = 221 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Garden pea (Pisum sativum) [TaxId: 3888]
Score = 83.7 bits (206), Expect = 5e-19
Identities = 40/156 (25%), Positives = 68/156 (43%), Gaps = 14/156 (8%)
Query: 71 YDFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKL 130
+ D+ IG G GG A+ AA G E G +GGTC+ GC+P K
Sbjct: 2 DENDVVIIGGGPGGYVAAIKAAQLGFKTTCIE---------KRGALGGTCLNVGCIPSKA 52
Query: 131 LVYASKFSHEFDESNGFGWKYGTEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIE 190
L+++S HE S + + D + ++ K+ + LT + + +T ++
Sbjct: 53 LLHSSHMYHEAKHSFANHGVKVSNVEIDLAAMMGQKDKAVSNLTRGIEGLFKKNKVTYVK 112
Query: 191 GRGKIVDP-----HTVDVDGKLYSARHILISVGGRP 221
G GK V P T++ + + +HI+I+ G
Sbjct: 113 GYGKFVSPSEISVDTIEGENTVVKGKHIIIATGSDV 148
|
| >d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} Length = 125 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Neisseria meningitidis [TaxId: 487]
Score = 81.4 bits (200), Expect = 3e-19
Identities = 34/124 (27%), Positives = 49/124 (39%), Gaps = 3/124 (2%)
Query: 221 PFIPDIPGSEYAIDSDAALDLPSKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKV 280
+P IP IDS AL L P K+ I+GGG I LE ++S L S + V +
Sbjct: 2 TKLPFIPEDPRIIDSSGALALKEVPGKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDGL 61
Query: 281 LRGFDEDIRDFVAEQMSLRGIEFHTEESPQAILKSTDG---SLSVKTNKGTVDGFSHVMF 337
++G D D+ +Q R A+ DG + + V+
Sbjct: 62 MQGADRDLVKVWQKQNEYRFDNIMVNTKTVAVEPKEDGVYVTFEGANAPKEPQRYDAVLV 121
Query: 338 ATGR 341
A GR
Sbjct: 122 AAGR 125
|
| >d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} Length = 183 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Score = 79.4 bits (194), Expect = 8e-18
Identities = 32/183 (17%), Positives = 60/183 (32%), Gaps = 25/183 (13%)
Query: 245 PEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFD-----------EDIRDFVA 293
+ ++G G ++ F + + + + R +D D
Sbjct: 3 KAPVVVLGAGLASVSFVAELRQAGYQGLITVVGDEAERPYDRPPLSKDFMAHGDAEKIRL 62
Query: 294 EQMSLRGIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNTKNLGL-EK 352
+ +E+ + Q+ +V + G + ++ ATG P
Sbjct: 63 DCKRAPEVEWLLGVTAQSFDPQAH---TVALSDGRTLPYGTLVLATGAAPRAVLANDALA 119
Query: 353 VGVKMTKNGAIEVDEYSGTAVPSIWAVGDVTD----------RINLTPVALMEGGALAKT 402
+ + I VD Y T P ++A+GDVT RI A +G A+A+
Sbjct: 120 RAAGLACDDGIFVDAYGRTTCPDVYALGDVTRQRNPLSGRFERIETWSNAQNQGIAVARH 179
Query: 403 LFQ 405
L
Sbjct: 180 LVD 182
|
| >d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} Length = 122 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Score = 76.3 bits (187), Expect = 2e-17
Identities = 29/127 (22%), Positives = 47/127 (37%), Gaps = 13/127 (10%)
Query: 220 RPFIPDIPGSEYAIDSDAALDLPS------KPEKIAIVGGGYIALEFAGIFSGLTSEVHV 273
R P I G EY + D + I+GGG+I LE AG + V +
Sbjct: 1 RAREPQIKGKEYLLTLRTIFDADRIKESIENSGEAIIIGGGFIGLELAGNLAEAGYHVKL 60
Query: 274 FIRQKKVLRGFDEDIRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFS 333
R G DE++ + + + + G++F + V TN G ++
Sbjct: 61 IHRGAM-FLGLDEELSNMIKDMLEETGVKFFLNSELLEANEE-----GVLTNSGFIE-GK 113
Query: 334 HVMFATG 340
+ A G
Sbjct: 114 VKICAIG 120
|
| >d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} Length = 125 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Human (Homo sapiens) [TaxId: 9606]
Score = 76.0 bits (186), Expect = 3e-17
Identities = 38/124 (30%), Positives = 53/124 (42%), Gaps = 8/124 (6%)
Query: 225 DIPGSEYAIDSDAALDLPSKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGF 284
IPG+ I SD L P + IVG GYIA+E AGI S L S+ + IR KVLR F
Sbjct: 2 QIPGASLGITSDGFFQLEELPGRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDKVLRSF 61
Query: 285 DEDIRDFVAEQMSLRGIEFHTEESPQAILKSTDG--------SLSVKTNKGTVDGFSHVM 336
D I E++ G+E + + K+ G + ++
Sbjct: 62 DSMISTNCTEELENAGVEVLKFSQVKEVKKTLSGLEVSMVTAVPGRLPVMTMIPDVDCLL 121
Query: 337 FATG 340
+A G
Sbjct: 122 WAIG 125
|
| >d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} Length = 220 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Pseudomonas putida [TaxId: 303]
Score = 77.7 bits (190), Expect = 7e-17
Identities = 39/157 (24%), Positives = 64/157 (40%), Gaps = 12/157 (7%)
Query: 71 YDFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKL 130
L IG G GG A+ A G + E +GGTC+ GC+P K
Sbjct: 4 IQTTLLIIGGGPGGYVAAIRAGQLGIPTVLVE----------GQALGGTCLNIGCIPSKA 53
Query: 131 LVYASKFSHEFDESNGFGWKY--GTEPQHDWSTLIANKNAELQRLTGIYKNILINAGITL 188
L++ ++ H+ P+ D +A K+ + RLT +L G+ +
Sbjct: 54 LIHVAEQFHQASRFTEPSPLGISVASPRLDIGQSVAWKDGIVDRLTTGVAALLKKHGVKV 113
Query: 189 IEGRGKIVDPHTVDVDGKLYSARHILISVGGRPFIPD 225
+ G K++D V+VDG+ H+L++ G
Sbjct: 114 VHGWAKVLDGKQVEVDGQRIQCEHLLLATGSSSVELP 150
|
| >d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} Length = 220 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Pseudomonas putida [TaxId: 303]
Score = 57.7 bits (138), Expect = 4e-10
Identities = 19/79 (24%), Positives = 33/79 (41%), Gaps = 6/79 (7%)
Query: 332 FSHVMFATGRRPNTKNLGLEKVGVKM------TKNGAIEVDEYSGTAVPSIWAVGDVTDR 385
H++ ATG G + AI +DE T++ ++WA+GDV
Sbjct: 135 CEHLLLATGSSSVELPRRPRTKGFNLECLDLKMNGAAIAIDERCQTSMHNVWAIGDVAGE 194
Query: 386 INLTPVALMEGGALAKTLF 404
L A+ +G +A+ +
Sbjct: 195 PMLAHRAMAQGEMVAEIIA 213
|
| >d1aoga1 c.3.1.5 (A:3-169,A:287-357) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Trypanosoma cruzi [TaxId: 5693]
Score = 77.4 bits (189), Expect = 1e-16
Identities = 52/193 (26%), Positives = 78/193 (40%), Gaps = 4/193 (2%)
Query: 73 FDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLV 132
FDL IGAGSGG+ A+ AA +GGTCV GCVPKKL+V
Sbjct: 4 FDLVVIGAGSGGLEAAWNAATLYKKRVAVIDVQMVHGPPFFSALGGTCVNVGCVPKKLMV 63
Query: 133 YASKFSHEFDESNGFGWKYG-TEPQHDWSTLIANKNAELQRLTGIYKNIL-INAGITLIE 190
+++ ES GFGW++ T + +W LIA K+ + + Y + G+
Sbjct: 64 TGAQYMEHLRESAGFGWEFDRTTLRAEWKNLIAVKDEAVLNINKSYDEMFRDTEGLEFFL 123
Query: 191 GRGKIVDPHTVDVDGKLYSARHILISVGGRPFIPDIPGSE--YAIDSDAALDLPSKPEKI 248
G G + + V+V A + + + S DL + +
Sbjct: 124 GWGSLESKNVVNVRESADPASAVKERLETEHILLASGSWPHMPNGRSPRTKDLQLQNAGV 183
Query: 249 AIVGGGYIALEFA 261
I GG E++
Sbjct: 184 MIKNGGVQVDEYS 196
|
| >d1aoga1 c.3.1.5 (A:3-169,A:287-357) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Trypanosoma cruzi [TaxId: 5693]
Score = 70.8 bits (172), Expect = 2e-14
Identities = 41/88 (46%), Positives = 54/88 (61%), Gaps = 1/88 (1%)
Query: 323 KTNKGTVDGFSHVMFATGRRPNTKNLGLEKVGVKMTKNGAIEVDEYSGTAVPSIWAVGDV 382
+T + S GR P TK+L L+ GV M KNG ++VDEYS T V +I+A+GDV
Sbjct: 151 ETEHILLASGSWPHMPNGRSPRTKDLQLQNAGV-MIKNGGVQVDEYSRTNVSNIYAIGDV 209
Query: 383 TDRINLTPVALMEGGALAKTLFQAEPTK 410
T+R+ LTPVA+ E AL T+F P K
Sbjct: 210 TNRVMLTPVAINEAAALVDTVFGTTPRK 237
|
| >d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Azotobacter vinelandii [TaxId: 354]
Score = 76.6 bits (187), Expect = 2e-16
Identities = 56/217 (25%), Positives = 91/217 (41%), Gaps = 21/217 (9%)
Query: 73 FDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLV 132
FD+ IGAG GG A+ +A G A+ E E +GGTC+ GC+P K L+
Sbjct: 4 FDVIVIGAGPGGYVAAIKSAQLGLKTALIE---KYKGKEGKTALGGTCLNVGCIPSKALL 60
Query: 133 YASKFSHEFDESNGFGWKYGTEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIEGR 192
+S HE ES E D T+IA K+ ++ LTG +++ G+TL EG
Sbjct: 61 DSSYKFHEAHESFKLHGISTGEVAIDVPTMIARKDQIVRNLTGGVASLIKANGVTLFEGH 120
Query: 193 GKIVDP-----HTVDVDGKLYSARHILISVGGRP-FIPDIPGSEYAIDSDAALDLPSK-- 244
GK++ D ++ +++++ G +P IP P + + +D+ + L +
Sbjct: 121 GKLLAGKKVEVTAADGSSQVLDTENVILASGSKPVEIPRRPVTTDLLAADSGVTLDERGF 180
Query: 245 ----------PEKIAIVGGGYIALEFAGIFSGLTSEV 271
+ +G A S V
Sbjct: 181 IYVDDYCATSVPGVYAIGDVVRGAMLAHKASEEGVVV 217
|
| >d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Azotobacter vinelandii [TaxId: 354]
Score = 67.8 bits (164), Expect = 2e-13
Identities = 35/155 (22%), Positives = 62/155 (40%), Gaps = 7/155 (4%)
Query: 255 YIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRDFVAEQMSLRGI-----EFHTEESP 309
+ + + GI +G + + +K ++ VA + G+
Sbjct: 70 HESFKLHGISTGEVAIDVPTMIARK--DQIVRNLTGGVASLIKANGVTLFEGHGKLLAGK 127
Query: 310 QAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNTKNLGLEKVGVKMTKNGAIEVDEYS 369
+ + + DGS V + + RRP T +L GV + + G I VD+Y
Sbjct: 128 KVEVTAADGSSQVLDTENVILASGSKPVEIPRRPVTTDLLAADSGVTLDERGFIYVDDYC 187
Query: 370 GTAVPSIWAVGDVTDRINLTPVALMEGGALAKTLF 404
T+VP ++A+GDV L A EG +A+ +
Sbjct: 188 ATSVPGVYAIGDVVRGAMLAHKASEEGVVVAERIA 222
|
| >d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} Length = 185 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Score = 74.4 bits (181), Expect = 4e-16
Identities = 36/185 (19%), Positives = 60/185 (32%), Gaps = 25/185 (13%)
Query: 243 SKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIR-------------QKKVLRGFDEDIR 289
+ + + IVG G +E A E ++ + K L G
Sbjct: 1 NANDNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDATVIPHHLPPLSKAYLAGKATAES 60
Query: 290 DFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNTKNLG 349
++ + Q + D + ++ +D ++ ATG RP N
Sbjct: 61 LYLRTPDAYAAQNIQLLGGTQVTAINRDRQQVILSDGRALDYD-RLVLATGGRPLIPNCE 119
Query: 350 LEKVGVKMTKNGAIEVDEYSGTAVPSIWAVGDVTD----------RINLTPVALMEGGAL 399
L + I ++E+ T+ P I AVGD RI P AL + +
Sbjct: 120 LASAAGLQ-VDNGIVINEHMQTSDPLIMAVGDCARFHSQLYDRWVRIESVPNALEQARKI 178
Query: 400 AKTLF 404
A L
Sbjct: 179 AAILC 183
|
| >d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Length = 117 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Score = 71.8 bits (175), Expect = 7e-16
Identities = 24/104 (23%), Positives = 50/104 (48%)
Query: 224 PDIPGSEYAIDSDAALDLPSKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRG 283
P+ S +DS AL+L P+ + ++GGGYI +E ++ ++V + ++L G
Sbjct: 1 PNFKFSNRILDSTGALNLGEVPKSLVVIGGGYIGIELGTAYANFGTKVTILEGAGEILSG 60
Query: 284 FDEDIRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTNKG 327
F++ + + +++ +G+E T + + DG G
Sbjct: 61 FEKQMAAIIKKRLKKKGVEVVTNALAKGAEEREDGVTVTYEANG 104
|
| >d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 235 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Mammalian thioredoxin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 74.8 bits (182), Expect = 9e-16
Identities = 53/161 (32%), Positives = 75/161 (46%), Gaps = 6/161 (3%)
Query: 71 YDFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKL 130
YDFDL IG GSGG+ A++ AA F V + + + T G+GGTCV GC+PKKL
Sbjct: 2 YDFDLIIIGGGSGGLAAAKEAAKFDKKVMVLDF-VTPTPLGTNWGLGGTCVNVGCIPKKL 60
Query: 131 LVYASKFSHEFDESNGFGWKYGTEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIE 190
+ A+ +S +GWK +HDW + + + L Y+ L +
Sbjct: 61 MHQAALLGQALKDSRNYGWKLEDTVKHDWEKMTESVQNHIGSLNWGYRVALREKKVVYEN 120
Query: 191 GRGKIVDPHTVDVDGK-----LYSARHILISVGGRPFIPDI 226
GK + PH + +YSA LI+ G RP I
Sbjct: 121 AYGKFIGPHKIMATNNKGKEKVYSAERFLIATGERPRYLGI 161
|
| >d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 235 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Mammalian thioredoxin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 66.3 bits (160), Expect = 6e-13
Identities = 31/74 (41%), Positives = 44/74 (59%), Gaps = 2/74 (2%)
Query: 341 RRPNTKNLGLEKVGVKMT-KNGAIEVDEYSGTAVPSIWAVGDVTD-RINLTPVALMEGGA 398
R T+ +GLE VGVK+ K G I V + T VP I+A+GD+ + ++ LTPVA+ G
Sbjct: 162 RDSCTRTIGLETVGVKINEKTGKIPVTDEEQTNVPYIYAIGDILEGKLELTPVAIQAGRL 221
Query: 399 LAKTLFQAEPTKPD 412
LA+ L+ K D
Sbjct: 222 LAQRLYGGSTVKCD 235
|
| >d1nhpa3 d.87.1.1 (A:322-447) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} Length = 126 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CO dehydrogenase flavoprotein C-domain-like superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Score = 71.1 bits (174), Expect = 2e-15
Identities = 19/108 (17%), Positives = 39/108 (36%), Gaps = 4/108 (3%)
Query: 420 VFSQPPIGQVGLSEEQAIQEYGDIDVFTANFRPLKATLSGLPDRIFMKLVLCAKTNKVLG 479
VF G++E A + + T L + + KLV +T ++LG
Sbjct: 10 VFD-YKFASTGINEVMAQKLGKETKAVTVVEDYLMDFNPD-KQKAWFKLVYDPETTQILG 67
Query: 480 LHMCGED-APEIVQGFAVAVKAGLTKADF-DATVGVHPTAAEEFVTLR 525
+ + + ++A++A +T D A P + + +
Sbjct: 68 AQLMSKADLTANINAISLAIQAKMTIEDLAYADFFFQPAFDKPWNIIN 115
|
| >d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} Length = 115 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Pseudomonas putida [TaxId: 303]
Score = 70.2 bits (171), Expect = 2e-15
Identities = 30/115 (26%), Positives = 52/115 (45%), Gaps = 1/115 (0%)
Query: 226 IPGSEYAIDSDAALDLPSKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFD 285
+P I S AL + P+ + +VGGGYI LE + L ++V V ++++L +D
Sbjct: 2 LPLGGPVISSTEALAPKALPQHLVVVGGGYIGLELGIAYRKLGAQVSVVEARERILPTYD 61
Query: 286 EDIRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATG 340
++ VAE + GI H S + + K + ++ V+ A G
Sbjct: 62 SELTAPVAESLKKLGIALHLGHSVEGYENGCLLANDGKGGQLRLE-ADRVLVAVG 115
|
| >d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} Length = 119 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Azotobacter vinelandii [TaxId: 354]
Score = 70.2 bits (171), Expect = 2e-15
Identities = 25/113 (22%), Positives = 47/113 (41%), Gaps = 2/113 (1%)
Query: 230 EYAIDSDAALDLPSKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIR 289
+ +DS ALD + P K+ ++G G I LE +++ L +EV V K L DE +
Sbjct: 7 DVIVDSTGALDFQNVPGKLGVIGAGVIGLELGSVWARLGAEVTVLEAMDKFLPAVDEQVA 66
Query: 290 DFVAEQMSLRGIEFHTEESPQAILKSTDG-SLSVKTNKG-TVDGFSHVMFATG 340
+ ++ +G++ ++ +G F ++ A G
Sbjct: 67 KEAQKILTKQGLKILLGARVTGTEVKNKQVTVKFVDAEGEKSQAFDKLIVAVG 119
|
| >d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 122 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 66.8 bits (162), Expect = 4e-14
Identities = 30/124 (24%), Positives = 54/124 (43%), Gaps = 8/124 (6%)
Query: 221 PFIPDIPGSEYAIDSDAALDLPSKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKV 280
P I E + S AL L P+++ I+GGG I LE ++S L S+V V Q ++
Sbjct: 1 PGIE--IDEEKIVSSTGALSLKEIPKRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQI 58
Query: 281 LRGFDEDIRDFVAEQMSLRGIEFHTEESPQAILKSTDGSL------SVKTNKGTVDGFSH 334
D ++ + + +G++F + ++ D ++ KTNK
Sbjct: 59 GASMDGEVAKATQKFLKKQGLDFKLSTKVISAKRNDDKNVVEIVVEDTKTNKQENLEAEV 118
Query: 335 VMFA 338
++ A
Sbjct: 119 LLVA 122
|
| >d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} Length = 121 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Score = 66.3 bits (161), Expect = 6e-14
Identities = 27/126 (21%), Positives = 46/126 (36%), Gaps = 13/126 (10%)
Query: 223 IPDIPGSEYAI-------DSDAALDLPSKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFI 275
+P + G+ + D+ ++ IVGGG I LE A V +
Sbjct: 1 LPTLQGATMPVHTLRTLEDARRIQAGLRPQSRLLIVGGGVIGLELAATARTAGVHVSLVE 60
Query: 276 RQKKVL-RGFDEDIRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSH 334
Q +++ R + DFVA + +G++ E S + V + GT
Sbjct: 61 TQPRLMSRAAPATLADFVARYHAAQGVDLRFERSVTGSVDGV-----VLLDDGTRIAADM 115
Query: 335 VMFATG 340
V+ G
Sbjct: 116 VVVGIG 121
|
| >d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} Length = 198 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Score = 64.9 bits (156), Expect = 1e-12
Identities = 38/197 (19%), Positives = 65/197 (32%), Gaps = 32/197 (16%)
Query: 247 KIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGF---------------DEDIRDF 291
K+ ++G + E L + + +K F +R
Sbjct: 2 KVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFISFLSAGMQLYLEGKVKDVNSVRYM 61
Query: 292 VAEQMSLRGIEFHTEESPQAILKSTDGSLSV--KTNKGTVDGFSHVMFATGRRPNT---- 345
E+M RG+ + AI + + V+ + ++ + G P
Sbjct: 62 TGEKMESRGVNVFSNTEITAIQPKEHQVTVKDLVSGEERVENYDKLIISPGAVPFELDGV 121
Query: 346 -KNLGLEKVGVKMTKNGAIEVDEYSGTAVPSIWAVGDVT----------DRINLTPVALM 394
N K +++ NG I+ DEY T+ P ++AVGD T I L A
Sbjct: 122 RPNTAWLKGTLELHPNGLIKTDEYMRTSEPDVFAVGDATLIKYNPADTEVNIALATNARK 181
Query: 395 EGGALAKTLFQAEPTKP 411
+G K L + P
Sbjct: 182 QGRFAVKNLEEPVKPFP 198
|
| >d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} Length = 123 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Garden pea (Pisum sativum) [TaxId: 3888]
Score = 63.0 bits (152), Expect = 1e-12
Identities = 30/121 (24%), Positives = 57/121 (47%), Gaps = 5/121 (4%)
Query: 223 IPDIP-GSEYAIDSDAALDLPSKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVL 281
+P + + + S AL L P+K+ ++G GYI LE ++ + SEV V +++
Sbjct: 2 LPGVTIDEKKIVSSTGALALSEIPKKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASEIV 61
Query: 282 RGFDEDIRDFVAEQMSLRGIEFHTEESPQAILKSTDG-SLSVKTNKG---TVDGFSHVMF 337
D +IR + +G++F + + S DG L+V+ + G T+ V+
Sbjct: 62 PTMDAEIRKQFQRSLEKQGMKFKLKTKVVGVDTSGDGVKLTVEPSAGGEQTIIEADVVLV 121
Query: 338 A 338
+
Sbjct: 122 S 122
|
| >d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]} Length = 137 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Apoptosis-inducing factor (AIF) species: Human (Homo sapiens) [TaxId: 9606]
Score = 62.9 bits (152), Expect = 1e-12
Identities = 23/112 (20%), Positives = 47/112 (41%), Gaps = 6/112 (5%)
Query: 234 DSDAALDLPSKPEKIAIVGGGYIALEFAGIFS----GLTSEVHVFIRQKKVL-RGFDEDI 288
D + + + + I I+GGG++ E A L +EV +K + + E +
Sbjct: 26 DFRSLEKISREVKSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGNMGKILPEYL 85
Query: 289 RDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATG 340
++ E++ G++ Q++ + G L +K G H++ A G
Sbjct: 86 SNWTMEKVRREGVKVMPNAIVQSV-GVSSGKLLIKLKDGRKVETDHIVAAVG 136
|
| >d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 233 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 62.4 bits (150), Expect = 1e-11
Identities = 38/224 (16%), Positives = 68/224 (30%), Gaps = 24/224 (10%)
Query: 74 DLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVY 133
+ +G G G A+ AA + I + G+GG VL CVP K +
Sbjct: 3 RIVILGGGPAGYEAALVAATSHPETTQVTV----IDCD---GIGGAAVLDDCVPSKTFIA 55
Query: 134 ASKFSHEFDESNGFG-WKYGTEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIEGR 192
++ E + G + + + A + L++ G+ +I GR
Sbjct: 56 STGLRTELRRAPHLGFHIDFDDAKISLPQIHARVKTLAAAQSADITAQLLSMGVQVIAGR 115
Query: 193 GKIVDPHT-----------VDVDGKLYSARHILISVGGRPFIPDIPGSEYAIDSDAALDL 241
G+++D D + A +L++ G P I
Sbjct: 116 GELIDSTPGLARHRIKATAADGSTSEHEADVVLVATGASPRILPSGSVPNTSGLGLERVG 175
Query: 242 PSKPEKIAIVGGGYIALEFAGIF-----SGLTSEVHVFIRQKKV 280
+ GI+ +GL V Q ++
Sbjct: 176 IQLGRGNYLTVDRVSRTLATGIYAAGDCTGLLPLASVAAMQGRI 219
|
| >d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 233 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 62.0 bits (149), Expect = 2e-11
Identities = 28/81 (34%), Positives = 39/81 (48%), Gaps = 1/81 (1%)
Query: 331 GFSHVMFATGRRPNTKNLGLEKVGVKMTKNGAIEVDEYSGTAVPSIWAVGDVTDRINLTP 390
G S + +G PNT LGLE+VG+++ + + VD S T I+A GD T + L
Sbjct: 152 GASPRILPSGSVPNTSGLGLERVGIQLGRGNYLTVDRVSRTLATGIYAAGDCTGLLPLAS 211
Query: 391 VALMEGGALAKTLFQAEPTKP 411
VA M+G E P
Sbjct: 212 VAAMQGRIAMYHAL-GEGVSP 231
|
| >d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} Length = 167 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Score = 57.4 bits (137), Expect = 2e-10
Identities = 29/169 (17%), Positives = 49/169 (28%), Gaps = 18/169 (10%)
Query: 247 KIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRDFVAEQMSLRGIEFHTE 306
K+ IVG G E A S EV V ++ R + +
Sbjct: 2 KVVIVGNGPGGFELAKQLSQT-YEVTVIDKEPVPYYSKPMLSHYIAGFIPRNRLFPYSLD 60
Query: 307 E--------SPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNTKNLGLEKVGVKMT 358
K D V + + ++ ATG + G+
Sbjct: 61 WYRKRGIEIRLAEEAKLIDRGRKVVITEKGEVPYDTLVLATGAPNVD---LARRSGIHT- 116
Query: 359 KNGAIEVDEYSGTAVPSIWAVGDVTDR----INLTPVALMEGGALAKTL 403
I +D+ T+ ++A+GD + A+ + LA L
Sbjct: 117 -GRGILIDDNFRTSAKDVYAIGDCAEYSGIIAGTAKAAMEQARVLADIL 164
|
| >d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} Length = 156 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Trimethylamine dehydrogenase, C-terminal domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Score = 56.8 bits (136), Expect = 3e-10
Identities = 23/158 (14%), Positives = 42/158 (26%), Gaps = 23/158 (14%)
Query: 218 GGRPFIPD-IPGSE----YAIDSDAALDLPSKPEKIAIV---GGGYIALEFAGIFSGLTS 269
G D IPG++ + + +D K K ++ ++A A +
Sbjct: 6 GTNCLTHDPIPGADASLPDQLTPEQVMDGKKKIGKRVVILNADTYFMAPSLAEKLATAGH 65
Query: 270 EVHVFIRQKKVLRGFDEDIRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTNKGTV 329
EV + + ++ +E + I ++
Sbjct: 66 EVTIVSGVHLANYMHFTLEYPNMMRRLHELHVEELGDHFCSRIEPGR-----MEIYNIWG 120
Query: 330 DGFSHVMFATGRRPNTKNLGLEKVGVKMTKNGAIEVDE 367
DG G P N T + IE D
Sbjct: 121 DGSKRTYRGPGVSPRDAN----------TSHRWIEFDS 148
|
| >d1d5ta1 c.3.1.3 (A:-2-291,A:389-431) Guanine nucleotide dissociation inhibitor, GDI {Cow (Bos taurus) [TaxId: 9913]} Length = 336 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: GDI-like N domain domain: Guanine nucleotide dissociation inhibitor, GDI species: Cow (Bos taurus) [TaxId: 9913]
Score = 56.8 bits (135), Expect = 2e-09
Identities = 25/328 (7%), Positives = 69/328 (21%), Gaps = 28/328 (8%)
Query: 72 DFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLL 131
++D+ +G G S + G V + + GG + + K+
Sbjct: 6 EYDVIVLGTGLTECILSGIMSVNGKKVLHMD------RNPYYGGESSSITPLEELYKRFQ 59
Query: 132 VYAS---KFSHEFDESNGFGWKYGTEPQHDWSTLI---ANKNAELQRLTGIYKNILINAG 185
+ D + K+ L+ + + + + G +
Sbjct: 60 LLEGPPETMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVVEGSFVYKGGKIY 119
Query: 186 ITLIEGRGKIVDPHTVDVDG-KLYSARHILISVGGRPFIPDIPGSEYAIDSDAALDLPSK 244
+ + + + +
Sbjct: 120 KVPSTETEALASNLMGMFEKRRFRKFLVFVANFDENDPKTFEGVDPQNTSMRDVYRKFDL 179
Query: 245 PEKIAIVGGGYIALEFAGIFSG-------------LTSEVHVFIRQKKVLRGFDEDIRDF 291
+ + G +AL + S ++
Sbjct: 180 GQDVIDFTGHALALYRTDDYLDQPCLETINRIKLYSESLARYGKSPYLYPLYGLGELPQG 239
Query: 292 VAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNTKNLGLE 351
A ++ G + + I+ + VK+ ++ P+ +
Sbjct: 240 FARLSAIYGGTYMLNKPVDDIIMENGKVVGVKSEGEVAR-CKQLICDPSYVPDRVPIDDG 298
Query: 352 KVGVKMTKNGAIEVDEYSGTAVPSIWAV 379
+ + T I +
Sbjct: 299 SESQVFCSCS-YDATTHFETTCNDIKDI 325
|
| >d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} Length = 133 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Score = 53.4 bits (127), Expect = 2e-09
Identities = 24/133 (18%), Positives = 42/133 (31%), Gaps = 3/133 (2%)
Query: 211 RHILISVGGRPFIPDIPGSEYAIDSDAALDLPSKPEKIAIVGGGYIALEFAGIFSGLTSE 270
R + ++ G + D++ ++ ++GGGYI LE A
Sbjct: 1 RPLPVASGAVGKANNFRYLRTLEDAECIRRQLIADNRLVVIGGGYIGLEVAATAIKANMH 60
Query: 271 VHVFIRQKK-VLRGFDEDIRDFVAEQMSLRGIEFHTEESPQAILKSTDGS--LSVKTNKG 327
V + + + R + F G++ T STD +V G
Sbjct: 61 VTLLDTAARVLERVTAPPVSAFYEHLHREAGVDIRTGTQVCGFEMSTDQQKVTAVLCEDG 120
Query: 328 TVDGFSHVMFATG 340
T V+ G
Sbjct: 121 TRLPADLVIAGIG 133
|
| >d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} Length = 121 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase species: Xanthobacter sp., py2 [TaxId: 35809]
Score = 51.1 bits (121), Expect = 1e-08
Identities = 19/114 (16%), Positives = 43/114 (37%), Gaps = 6/114 (5%)
Query: 233 IDSDAALDLPSK--PEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRD 290
D ++ + +VGG A+E+ F+ + +R + + D + R
Sbjct: 8 FDHATLVEELDYEPGSTVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEPLKLIKDNETRA 67
Query: 291 FVAEQMSLRGIEFHTEESPQAILKSTDGS----LSVKTNKGTVDGFSHVMFATG 340
+V ++M +G+E + + I + +G +++ N V G
Sbjct: 68 YVLDRMKEQGMEIISGSNVTRIEEDANGRVQAVVAMTPNGEMRIETDFVFLGLG 121
|
| >d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} Length = 347 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Polyamine oxidase species: Maize (Zea mays) [TaxId: 4577]
Score = 53.8 bits (127), Expect = 2e-08
Identities = 49/348 (14%), Positives = 87/348 (25%), Gaps = 31/348 (8%)
Query: 78 IGAGSGGVRASRFAANFG-ASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASK 136
+GAG G+ A++ + G + I E T +GG + + A+
Sbjct: 6 VGAGMSGISAAKRLSEAGITDLLILE---------ATDHIGGRMHKTNFAGINVELGANW 56
Query: 137 FSHEFDESNGFGWKYG------TEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIE 190
W + D+ L N E + +E
Sbjct: 57 VEGVNGGKMNPIWPIVNSTLKLRNFRSDFDYLAQNVYKEDGGVYDEDYVQKRIELADSVE 116
Query: 191 GRGKIVDPHTVDVDGKLYSARHILISVGGRPFIPDIPGSEYAIDSDAALDLPSKPEKIAI 250
G+ + S + +P P P + D
Sbjct: 117 EMGEKLSATLHASGRDDMSILAMQRLNEHQPNGPATP--VDMVVDYYKFDYEFAEPPRVT 174
Query: 251 VGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRDFVAEQMSLRGIEFHTEESPQ 310
+ L F V + V+ +
Sbjct: 175 SLQNTVPLATFSDFGDDVYFVADQRGYEAVVYYLAGQYLKTDDKSGK-IVDPRLQLNKVV 233
Query: 311 AILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNTKNLGLEKVGVKMTKNGAIE------ 364
+K + G ++VKT +V +VM + +L K + K AI
Sbjct: 234 REIKYSPGGVTVKTEDNSVYSADYVMVSASLGVLQSDLIQFKPKLPTWKVRAIYQFWPVG 293
Query: 365 ----VDEYSGTAVPSIWAVGDVTDRINLTPV--ALMEGGALAKTLFQA 406
+ V ++ G+ T V A + G A+ L
Sbjct: 294 VNRYEYDQLRAPVGRVYFTGEHTSEHYNGYVHGAYLSGIDSAEILINC 341
|
| >d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]} Length = 278 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Thi4-like domain: Thiazole biosynthetic enzyme Thi4 species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]
Score = 50.3 bits (119), Expect = 2e-07
Identities = 37/260 (14%), Positives = 76/260 (29%), Gaps = 27/260 (10%)
Query: 48 FQCRRRHVAARAKSDNGAE-LPSHYDFDLFTIGAGSGGVRAS-RFAANFGASVAICELPF 105
F + + +R + + ++ + D+ +GAGS G+ A+ + N VAI
Sbjct: 8 FDPIKESIVSREMTRRYMTDMITYAETDVVVVGAGSAGLSAAYEISKNPNVQVAII---- 63
Query: 106 STISSETTGGVGGTCVLRGCVPKKLLV------YASKFSHEFDESNGFGWKYGTEPQHD- 158
E + GG L G + ++V + + +DE + +
Sbjct: 64 -----EQSVSPGGGAWLGGQLFSAMIVRKPAHLFLDEIGVAYDEQDTYVVVKHAALFTST 118
Query: 159 -WSTLIANKNAELQRLTGIYKNILINAGITLIEGRGKIVDPHTVDVDGKLYSA--RHILI 215
S L+A N +L I+ + + +V + + I++
Sbjct: 119 IMSKLLARPNVKLFNAVAAEDLIVKGNRVGGVVTNWALVAQNHHTQSCMDPNVMEAKIVV 178
Query: 216 SVGGRPFIPDIPGSEYAIDSDAALDLPSKPEKIAIVGGGYIALEFAGIFSGL------TS 269
S G G + +P I + G+ +
Sbjct: 179 SSCGHDGPFGATGVKRLKSIGMIDHVPGMKALDMNTAEDAIVRLTREVVPGMIVTGMEVA 238
Query: 270 EVHVFIRQKKVLRGFDEDIR 289
E+ R +
Sbjct: 239 EIDGAPRMGPTFGAMMISGQ 258
|
| >d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]} Length = 196 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Dihydropyrimidine dehydrogenase, domain 2 species: Pig (Sus scrofa) [TaxId: 9823]
Score = 43.6 bits (101), Expect = 2e-05
Identities = 35/195 (17%), Positives = 71/195 (36%), Gaps = 9/195 (4%)
Query: 243 SKPEKIAIVGGGYIALEFAGIFSGL-TSEVHVFIRQKKVLRGFDEDIRDFVAEQMSLRGI 301
+ KIA++G G ++ A + L S++ +F +Q+ V +I F +
Sbjct: 2 AYSAKIALLGAGPASISCASFLARLGYSDITIFEKQEYVGGLSTSEIPQFRLPYDVVNFE 61
Query: 302 EFHTEESPQAILKSTD---GSLSVKTNKGTVDGFSHVMFATGRRPNTKNLGLEKVGVKMT 358
++ I+ +++ T K + + + +K
Sbjct: 62 IELMKDLGVKIICGKSLSENEITLNTLKEEGYKAAFIGIGLPEVLRDPKVKEALSPIKFN 121
Query: 359 KNGAIEVDEYS-GTAVPSIWAVGDVTDRINLTPVALMEGGALAKTLF---QAEPTKPDYS 414
+ EVD + T+ P ++A GD+ N T ++ +G + + QA+ S
Sbjct: 122 RWDLPEVDPETMQTSEPWVFAGGDIVGMANTTVESVNDGKQASWYIHKYIQAQYGAS-VS 180
Query: 415 AVPSAVFSQPPIGQV 429
A P P+ V
Sbjct: 181 AKPELPLFYTPVDLV 195
|
| >d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 192 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 43.4 bits (101), Expect = 2e-05
Identities = 26/181 (14%), Positives = 57/181 (31%), Gaps = 21/181 (11%)
Query: 241 LPSKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIR-----------------QKKVLRG 283
L + ++ IVG G A A + + +F +
Sbjct: 1 LETHNTRLCIVGSGPAAHTAAIYAARAELKPLLFEGWMANDIAPGGQLTTTTDVENFPGF 60
Query: 284 FDEDIRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSH---VMFATG 340
+ + + ++ + F T + + K S K + + +
Sbjct: 61 PEGILGVELTDKFRKQSERFGTTIFTETVTKVDFSSKPFKLFTDSKAILADAVILAIGAV 120
Query: 341 RRPNTKNLGLEKVGVKMTKNGAIEVDEYSG-TAVPSIWAVGDVTDRINLTPVALMEGGAL 399
+ + GV++ +G + + T+VP ++A GDV D+ + G +
Sbjct: 121 AKGHEPATKFLDGGVELDSDGYVVTKPGTTQTSVPGVFAAGDVQDKKYRQAITAAGTGCM 180
Query: 400 A 400
A
Sbjct: 181 A 181
|
| >d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: HI0933 N-terminal domain-like domain: Hypothetical protein HI0933 species: Haemophilus influenzae [TaxId: 727]
Score = 43.7 bits (102), Expect = 2e-05
Identities = 24/196 (12%), Positives = 56/196 (28%), Gaps = 16/196 (8%)
Query: 73 FDLFTIGAGSGGVRASRFAANFGASVAICE-LPFSTISSETTGGVGGTCVLRGCVPKKLL 131
+ IGAG+ G+ + A G SV + + +GG P L
Sbjct: 5 SENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKKIGRKILMSGGGFCNFTNLEVTPAHYL 64
Query: 132 VYASKFSHEFDESNGFGWKYGTEPQHDWSTLIANKNA-----ELQRLTGIYKNILINAGI 186
F + + +++ + K+ G
Sbjct: 65 SQNPHFVKSALARYTNWDFISLVAEQGITYHEKELGQLFCDEGAEQIVEMLKSECDKYGA 124
Query: 187 T---------LIEGRGKIVDPHTVDVDGKLYSARHILISVGGRPFIPDIPGSEYAIDSDA 237
+ + + V+ + ++++++ GG +P + + +
Sbjct: 125 KILLRSEVSQVERIQNDEKVRFVLQVNSTQWQCKNLIVATGGLS-MPGLGATPFGYQIAE 183
Query: 238 ALDLPSKPEKIAIVGG 253
+P P + +GG
Sbjct: 184 QFGIPVIPPRAVTMGG 199
|
| >d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]} Length = 186 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]
Score = 42.1 bits (97), Expect = 5e-05
Identities = 18/175 (10%), Positives = 44/175 (25%), Gaps = 18/175 (10%)
Query: 247 KIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRDFVAEQMSLRGIEFHTE 306
K+ +VGGG A + V + + + + L I+ +
Sbjct: 4 KVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNTDYYTCYLSNEVIGGDRKLESIKHGYD 63
Query: 307 ESPQAILKSTDGSLSVKTNKGTVDG--------FSHVMFATGRRPNTKNLGLEKVGVKMT 358
++ S + + + + A G + +
Sbjct: 64 GLRAHGIQVVHDSATGIDPDKKLVKTAGGAEFGYDRCVVAPGIELIYDKIEQRAGKIAQI 123
Query: 359 KNGAIE-------VDEYSGTAVPSIWAVGDVTDRINLTP---VALMEGGALAKTL 403
+ + + + I +GD + + A +G A +
Sbjct: 124 AGLTNDAGWCPVDIKTFESSIHKGIHVIGDASIANPMPKSGYSANSQGKVAAAAV 178
|
| >d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]} Length = 184 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains species: Escherichia coli [TaxId: 562]
Score = 40.9 bits (94), Expect = 1e-04
Identities = 21/168 (12%), Positives = 46/168 (27%), Gaps = 15/168 (8%)
Query: 248 IAIVGGGYIALEFAGIFSGLTSEVHVFIRQKK--------------VLRGFDEDIRDFVA 293
+ IVG G A + + + V + + + +
Sbjct: 4 VLIVGSGPAGAAAAIYSARKGIRTGLMGERFGGQILDTVDIENYISVPKTEGQKLAGALK 63
Query: 294 EQMSLRGIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNTKNLGLEKV 353
+ ++ +S ++ + + + N +
Sbjct: 64 VHVDEYDVDVIDSQSASKLIPAAVEGGLHQIETASGAVLKARSIIVATGAKLPNTNWLEG 123
Query: 354 GVKMTKNGAIEVDEYSGTAVPSIWAVGDVTD-RINLTPVALMEGGALA 400
V+ + G I +D T V ++A GD T +A EG +
Sbjct: 124 AVERNRMGEIIIDAKCETNVKGVFAAGDCTTVPYKQIIIATGEGAKAS 171
|
| >d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]} Length = 184 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains species: Escherichia coli [TaxId: 562]
Score = 36.6 bits (83), Expect = 0.003
Identities = 30/187 (16%), Positives = 55/187 (29%), Gaps = 15/187 (8%)
Query: 73 FDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLV 132
+D+ +G+G G A+ ++A G + GG + + + V
Sbjct: 2 YDVLIVGSGPAGAAAAIYSARKGIRTGLMG-----------ERFGGQILDTVDIENYISV 50
Query: 133 YASKFSHEFDESNGFGWKYGTEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIEGR 192
++ +Y + S A L I I
Sbjct: 51 PKTEGQKLAGALKVHVDEYDVDVIDSQSASKLIPAAVEGGLHQIETASGAVLKARSIIVA 110
Query: 193 GKIVDPHTVDVDGKLYSARHILISVGGRPFIPDIPGSEYAIDSDAALDLPSKPEKIAIVG 252
P+T ++G + R I + + ++ G A D +P K IA
Sbjct: 111 TGAKLPNTNWLEGAVERNRMGEIIIDAKCE-TNVKGVFAAGDCT---TVPYKQIIIATGE 166
Query: 253 GGYIALE 259
G +L
Sbjct: 167 GAKASLS 173
|
| >d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]} Length = 190 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Escherichia coli [TaxId: 562]
Score = 39.4 bits (91), Expect = 4e-04
Identities = 31/177 (17%), Positives = 55/177 (31%), Gaps = 19/177 (10%)
Query: 243 SKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQ------------KKVLRGFDEDIRD 290
+K K+ I+G G A + + + + ++
Sbjct: 3 TKHSKLLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQLTTTTEVENWPGDPNDLTGP 62
Query: 291 FVAEQMSLRGIEFHTEESPQAILK-STDGSLSVKTNKGTVDGFSHVMFATGRRPNTKNLG 349
+ E+M +F TE I K ++ ATG +
Sbjct: 63 LLMERMHEHATKFETEIIFDHINKVDLQNRPFRLNGDNGEYTCDALIIATGASARYHSPN 122
Query: 350 LEKV-GVKMTKNGAIEVD-----EYSGTAVPSIWAVGDVTDRINLTPVALMEGGALA 400
G +NG I+V + T++P ++A GDV D I + G +A
Sbjct: 123 TAIFEGQLELENGYIKVQSGIHGNATQTSIPGVFAAGDVMDHIYRQAITSAGTGCMA 179
|
| >d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: HI0933 N-terminal domain-like domain: Flavoprotein BC4706 species: Bacillus cereus [TaxId: 1396]
Score = 38.5 bits (88), Expect = 0.001
Identities = 33/167 (19%), Positives = 58/167 (34%), Gaps = 20/167 (11%)
Query: 72 DFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLL 131
+D+ IG G G+ A+ AA GA+V + + + + + GG C + +P +
Sbjct: 2 HYDVIVIGGGPSGLMAAIGAAEEGANVLLLD-KGNKLGRKLAISGGGRCNVTNRLPLDEI 60
Query: 132 VYASKFSHEFDES--------------NGFGWKYGTEPQHDWSTLIANKNAELQRLTGIY 177
V + F S G K E + + + L
Sbjct: 61 VKHIPGNGRFLYSAFSIFNNEDIITFFENLGVKLKEEDHGRMFPVSNKAQSVVDALLTRL 120
Query: 178 K----NILINAGITLIEGRGKIVDPHTVDVDGKLYSARHILISVGGR 220
K I N + IE + G++ H++I+VGG+
Sbjct: 121 KDLGVKIRTNTPVETIEYENGQTKAVILQ-TGEVLETNHVVIAVGGK 166
|
| >d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} Length = 308 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Flavocytochrome c3 (respiratory fumarate reductase) species: Shewanella frigidimarina [TaxId: 56812]
Score = 38.9 bits (89), Expect = 0.001
Identities = 24/116 (20%), Positives = 36/116 (31%), Gaps = 3/116 (2%)
Query: 60 KSDNGAELPS--HYDFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVG 117
KS+ A L S H D+ +G+G G A+ A + GA V + E I G
Sbjct: 2 KSERQAALASAPHDTVDVVVVGSGGAGFSAAISATDSGAKVILIE-KEPVIGGNAKLAAG 60
Query: 118 GTCVLRGCVPKKLLVYASKFSHEFDESNGFGWKYGTEPQHDWSTLIANKNAELQRL 173
G K + S D G S+ + + +
Sbjct: 61 GMNAAWTDQQKAKKITDSPELMFEDTMKGGQNINDPALVKVLSSHSKDSVDWMTAM 116
|
| >d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]} Length = 162 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: 2,4-dienoyl-CoA reductase, C-terminal domain species: Escherichia coli [TaxId: 562]
Score = 37.2 bits (85), Expect = 0.002
Identities = 30/154 (19%), Positives = 51/154 (33%), Gaps = 10/154 (6%)
Query: 221 PFIPDIPGSEYA--IDSDAAL-DLPSKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQ 277
P P I G ++ + L D K+AI+G G I + A S I
Sbjct: 2 PRTPPIDGIDHPKVLSYLDVLRDKAPVGNKVAIIGCGGIGFDTAMYLSQPGESTSQNIAG 61
Query: 278 KKVLRGFDEDIRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMF 337
G D ++ A +S +G++ +L+ K T +
Sbjct: 62 FCNEWGIDSSLQ--QAGGLSPQGMQIPRSPRQIVMLQRKASKPGQGLGKTTGWIHRTTLL 119
Query: 338 ATG--RRPNTKNLGLEKVGVKMTKNGA---IEVD 366
+ G P ++ G+ + NG + VD
Sbjct: 120 SRGVKMIPGVSYQKIDDDGLHVVINGETQVLAVD 153
|
| >d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 297 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: GDI-like N domain domain: Guanine nucleotide dissociation inhibitor, GDI species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 37.1 bits (84), Expect = 0.004
Identities = 16/89 (17%), Positives = 25/89 (28%), Gaps = 6/89 (6%)
Query: 72 DFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLL 131
D+D+ +G G S + G V + + GG + L K
Sbjct: 5 DYDVIVLGTGITECILSGLLSVDGKKVLHID------KQDHYGGEAASVTLSQLYEKFKQ 58
Query: 132 VYASKFSHEFDESNGFGWKYGTEPQHDWS 160
SK E W P+ +
Sbjct: 59 NPISKEERESKFGKDRDWNVDLIPKFLMA 87
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 551 | |||
| d1xdia1 | 233 | Dihydrolipoamide dehydrogenase {Mycobacterium tube | 100.0 | |
| d1ebda1 | 223 | Dihydrolipoamide dehydrogenase {Bacillus stearothe | 100.0 | |
| d3grsa1 | 221 | Glutathione reductase {Human (Homo sapiens) [TaxId | 100.0 | |
| d1h6va1 | 235 | Mammalian thioredoxin reductase {Rat (Rattus norve | 100.0 | |
| d1dxla1 | 221 | Dihydrolipoamide dehydrogenase {Garden pea (Pisum | 99.97 | |
| d1feca1 | 240 | Trypanothione reductase {Crithidia fasciculata [Ta | 99.97 | |
| d1mo9a1 | 261 | NADH-dependent 2-ketopropyl coenzyme M oxidoreduct | 99.97 | |
| d1lvla1 | 220 | Dihydrolipoamide dehydrogenase {Pseudomonas putida | 99.97 | |
| d1v59a1 | 233 | Dihydrolipoamide dehydrogenase {Baker's yeast (Sac | 99.96 | |
| d1aoga1 | 238 | Trypanothione reductase {Trypanosoma cruzi [TaxId: | 99.96 | |
| d1ojta1 | 229 | Dihydrolipoamide dehydrogenase {Neisseria meningit | 99.95 | |
| d3lada1 | 229 | Dihydrolipoamide dehydrogenase {Azotobacter vinela | 99.95 | |
| d1gesa1 | 217 | Glutathione reductase {Escherichia coli [TaxId: 56 | 99.95 | |
| d1onfa1 | 259 | Glutathione reductase {Plasmodium falciparum [TaxI | 99.95 | |
| d1v59a3 | 123 | Dihydrolipoamide dehydrogenase {Baker's yeast (Sac | 99.93 | |
| d1feca3 | 128 | Trypanothione reductase {Crithidia fasciculata [Ta | 99.93 | |
| d3grsa3 | 115 | Glutathione reductase {Human (Homo sapiens) [TaxId | 99.93 | |
| d3lada3 | 124 | Dihydrolipoamide dehydrogenase {Azotobacter vinela | 99.93 | |
| d1dxla3 | 123 | Dihydrolipoamide dehydrogenase {Garden pea (Pisum | 99.93 | |
| d1ebda3 | 115 | Dihydrolipoamide dehydrogenase {Bacillus stearothe | 99.93 | |
| d1xdia2 | 118 | Dihydrolipoamide dehydrogenase {Mycobacterium tube | 99.93 | |
| d1lvla3 | 123 | Dihydrolipoamide dehydrogenase {Pseudomonas putida | 99.93 | |
| d1gesa3 | 115 | Glutathione reductase {Escherichia coli [TaxId: 56 | 99.93 | |
| d1ojta3 | 128 | Dihydrolipoamide dehydrogenase {Neisseria meningit | 99.93 | |
| d1onfa3 | 119 | Glutathione reductase {Plasmodium falciparum [TaxI | 99.92 | |
| d1mo9a3 | 140 | NADH-dependent 2-ketopropyl coenzyme M oxidoreduct | 99.89 | |
| d1h6va3 | 133 | Mammalian thioredoxin reductase {Rat (Rattus norve | 99.89 | |
| d1gesa2 | 116 | Glutathione reductase {Escherichia coli [TaxId: 56 | 99.87 | |
| d1onfa2 | 117 | Glutathione reductase {Plasmodium falciparum [TaxI | 99.86 | |
| d1d7ya1 | 183 | NADH-dependent ferredoxin reductase, BphA4 {Pseudo | 99.84 | |
| d1ojta2 | 125 | Dihydrolipoamide dehydrogenase {Neisseria meningit | 99.84 | |
| d1feca2 | 117 | Trypanothione reductase {Crithidia fasciculata [Ta | 99.83 | |
| d1nhpa1 | 198 | NADH peroxidase {Enterococcus faecalis [TaxId: 135 | 99.83 | |
| d1aoga2 | 117 | Trypanothione reductase {Trypanosoma cruzi [TaxId: | 99.82 | |
| d1xhca1 | 167 | NADH oxidase /nitrite reductase {Pyrococcus furios | 99.82 | |
| d1m6ia1 | 213 | Apoptosis-inducing factor (AIF) {Human (Homo sapie | 99.81 | |
| d1nhpa3 | 126 | NADH peroxidase {Enterococcus faecalis [TaxId: 135 | 99.81 | |
| d1ebda2 | 117 | Dihydrolipoamide dehydrogenase {Bacillus stearothe | 99.81 | |
| d3lada2 | 119 | Dihydrolipoamide dehydrogenase {Azotobacter vinela | 99.8 | |
| d3grsa2 | 125 | Glutathione reductase {Human (Homo sapiens) [TaxId | 99.8 | |
| d1q1ra1 | 185 | Putidaredoxin reductase {Pseudomonas putida [TaxId | 99.8 | |
| d1v59a2 | 122 | Dihydrolipoamide dehydrogenase {Baker's yeast (Sac | 99.78 | |
| d1dxla2 | 123 | Dihydrolipoamide dehydrogenase {Garden pea (Pisum | 99.75 | |
| d1h6va2 | 122 | Mammalian thioredoxin reductase {Rat (Rattus norve | 99.75 | |
| d1lvla2 | 115 | Dihydrolipoamide dehydrogenase {Pseudomonas putida | 99.74 | |
| d1d7ya2 | 121 | NADH-dependent ferredoxin reductase, BphA4 {Pseudo | 99.73 | |
| d1xhca2 | 122 | NADH oxidase /nitrite reductase {Pyrococcus furios | 99.72 | |
| d1q1ra2 | 133 | Putidaredoxin reductase {Pseudomonas putida [TaxId | 99.72 | |
| d1vdca1 | 192 | Thioredoxin reductase {Mouse-ear cress (Arabidopsi | 99.66 | |
| d1fcda1 | 186 | Flavocytochrome c sulfide dehydrogenase, FCSD, fla | 99.63 | |
| d1nhpa2 | 123 | NADH peroxidase {Enterococcus faecalis [TaxId: 135 | 99.62 | |
| d1m6ia2 | 137 | Apoptosis-inducing factor (AIF) {Human (Homo sapie | 99.62 | |
| d1djqa3 | 233 | Trimethylamine dehydrogenase, middle domain {Methy | 99.61 | |
| d1mo9a2 | 121 | NADH-dependent 2-ketopropyl coenzyme M oxidoreduct | 99.6 | |
| d1trba1 | 190 | Thioredoxin reductase {Escherichia coli [TaxId: 56 | 99.6 | |
| d1djqa2 | 156 | Trimethylamine dehydrogenase, C-terminal domain {M | 99.59 | |
| d2i0za1 | 251 | Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396] | 99.57 | |
| d2gqfa1 | 253 | Hypothetical protein HI0933 {Haemophilus influenza | 99.55 | |
| d1ps9a3 | 179 | 2,4-dienoyl-CoA reductase, middle domain {Escheric | 99.53 | |
| d1fl2a1 | 184 | Alkyl hydroperoxide reductase subunit F (AhpF), C- | 99.51 | |
| d1d4ca2 | 322 | Flavocytochrome c3 (respiratory fumarate reductase | 99.42 | |
| d1d5ta1 | 336 | Guanine nucleotide dissociation inhibitor, GDI {Co | 99.39 | |
| d1ryia1 | 276 | Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | 99.38 | |
| d2gf3a1 | 281 | Sarcosine oxidase {Bacillus sp., strain b0618 [Tax | 99.36 | |
| d2bs2a2 | 336 | Fumarate reductase {Wolinella succinogenes [TaxId: | 99.31 | |
| d1chua2 | 305 | L-aspartate oxidase {Escherichia coli [TaxId: 562] | 99.26 | |
| d1seza1 | 373 | Protoporphyrinogen oxidase {Tobacco (Nicotiana tab | 99.26 | |
| d1y0pa2 | 308 | Flavocytochrome c3 (respiratory fumarate reductase | 99.26 | |
| d1b5qa1 | 347 | Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} | 99.25 | |
| d2ivda1 | 347 | Protoporphyrinogen oxidase {Myxococcus xanthus [Ta | 99.23 | |
| d1ps9a2 | 162 | 2,4-dienoyl-CoA reductase, C-terminal domain {Esch | 99.22 | |
| d1qo8a2 | 317 | Flavocytochrome c3 (respiratory fumarate reductase | 99.21 | |
| d2iida1 | 370 | L-aminoacid oxidase {Malayan pit viper (Calloselas | 99.19 | |
| d2v5za1 | 383 | Monoamine oxidase B {Human (Homo sapiens) [TaxId: | 99.18 | |
| d1pj5a2 | 305 | N,N-dimethylglycine oxidase {Arthrobacter globifor | 99.1 | |
| d1onfa1 | 259 | Glutathione reductase {Plasmodium falciparum [TaxI | 99.08 | |
| d2gv8a1 | 335 | Flavin-dependent monoxygenase SPBP16F5.08c {Schizo | 99.08 | |
| d1trba2 | 126 | Thioredoxin reductase {Escherichia coli [TaxId: 56 | 99.07 | |
| d1w4xa1 | 298 | Phenylacetone monooxygenase {Thermobifida fusca [T | 99.05 | |
| d2cula1 | 230 | GidA-related protein TTHA1897 {Thermus thermophilu | 99.02 | |
| d1gtea4 | 196 | Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su | 99.01 | |
| d1fl2a2 | 126 | Alkyl hydroperoxide reductase subunit F (AhpF), C- | 98.96 | |
| d1trba1 | 190 | Thioredoxin reductase {Escherichia coli [TaxId: 56 | 98.95 | |
| d1kf6a2 | 311 | Fumarate reductase {Escherichia coli [TaxId: 562]} | 98.93 | |
| d1lqta2 | 239 | Ferredoxin:NADP reductase FprA {Mycobacterium tube | 98.93 | |
| d1neka2 | 330 | Succinate dehydogenase {Escherichia coli [TaxId: 5 | 98.85 | |
| d2bcgg1 | 297 | Guanine nucleotide dissociation inhibitor, GDI {Ba | 98.84 | |
| d1ps9a3 | 179 | 2,4-dienoyl-CoA reductase, middle domain {Escheric | 98.84 | |
| d1d7ya2 | 121 | NADH-dependent ferredoxin reductase, BphA4 {Pseudo | 98.83 | |
| d2gmha1 | 380 | Electron transfer flavoprotein-ubiquinone oxidored | 98.83 | |
| d1rp0a1 | 278 | Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara | 98.77 | |
| d1fl2a1 | 184 | Alkyl hydroperoxide reductase subunit F (AhpF), C- | 98.71 | |
| d1vdca1 | 192 | Thioredoxin reductase {Mouse-ear cress (Arabidopsi | 98.69 | |
| d1xhca2 | 122 | NADH oxidase /nitrite reductase {Pyrococcus furios | 98.69 | |
| d1w4xa1 | 298 | Phenylacetone monooxygenase {Thermobifida fusca [T | 98.68 | |
| d1gesa2 | 116 | Glutathione reductase {Escherichia coli [TaxId: 56 | 98.66 | |
| d1gtea3 | 153 | Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su | 98.65 | |
| d1fcda1 | 186 | Flavocytochrome c sulfide dehydrogenase, FCSD, fla | 98.65 | |
| d1lvla2 | 115 | Dihydrolipoamide dehydrogenase {Pseudomonas putida | 98.65 | |
| d1q1ra2 | 133 | Putidaredoxin reductase {Pseudomonas putida [TaxId | 98.55 | |
| d1i8ta1 | 298 | UDP-galactopyranose mutase, N-terminal domain {Esc | 98.53 | |
| d1vdca2 | 130 | Thioredoxin reductase {Mouse-ear cress (Arabidopsi | 98.53 | |
| d1cjca2 | 230 | Adrenodoxin reductase of mitochondrial p450 system | 98.51 | |
| d1m6ia1 | 213 | Apoptosis-inducing factor (AIF) {Human (Homo sapie | 98.5 | |
| d3lada2 | 119 | Dihydrolipoamide dehydrogenase {Azotobacter vinela | 98.49 | |
| d2dw4a2 | 449 | Lysine-specific histone demethylase 1, LSD1 {Human | 98.46 | |
| d1xhca1 | 167 | NADH oxidase /nitrite reductase {Pyrococcus furios | 98.44 | |
| d1nhpa2 | 123 | NADH peroxidase {Enterococcus faecalis [TaxId: 135 | 98.38 | |
| d2voua1 | 265 | Dihydroxypyridine hydroxylase DhpH {Arthrobacter n | 98.35 | |
| d2cula1 | 230 | GidA-related protein TTHA1897 {Thermus thermophilu | 98.32 | |
| d2gv8a2 | 107 | Flavin-dependent monoxygenase SPBP16F5.08c {Schizo | 98.31 | |
| d1m6ia2 | 137 | Apoptosis-inducing factor (AIF) {Human (Homo sapie | 98.31 | |
| d1feca2 | 117 | Trypanothione reductase {Crithidia fasciculata [Ta | 98.28 | |
| d2bi7a1 | 314 | UDP-galactopyranose mutase, N-terminal domain {Kle | 98.28 | |
| d1ebda2 | 117 | Dihydrolipoamide dehydrogenase {Bacillus stearothe | 98.27 | |
| d1d7ya1 | 183 | NADH-dependent ferredoxin reductase, BphA4 {Pseudo | 98.23 | |
| d1nhpa1 | 198 | NADH peroxidase {Enterococcus faecalis [TaxId: 135 | 98.22 | |
| d1c0pa1 | 268 | D-aminoacid oxidase, N-terminal domain {Rhodotorul | 98.22 | |
| d1mo9a2 | 121 | NADH-dependent 2-ketopropyl coenzyme M oxidoreduct | 98.22 | |
| d1h6va2 | 122 | Mammalian thioredoxin reductase {Rat (Rattus norve | 98.22 | |
| d3grsa2 | 125 | Glutathione reductase {Human (Homo sapiens) [TaxId | 98.19 | |
| d1onfa2 | 117 | Glutathione reductase {Plasmodium falciparum [TaxI | 98.19 | |
| d1w4xa2 | 235 | Phenylacetone monooxygenase {Thermobifida fusca [T | 98.15 | |
| d1gtea4 | 196 | Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su | 98.15 | |
| d1ojta2 | 125 | Dihydrolipoamide dehydrogenase {Neisseria meningit | 98.11 | |
| d1v59a2 | 122 | Dihydrolipoamide dehydrogenase {Baker's yeast (Sac | 98.08 | |
| d2f5va1 | 379 | Pyranose 2-oxidase {White-rot fungus (Peniophora s | 98.08 | |
| d2gjca1 | 311 | Thiazole biosynthetic enzyme Thi4 {Baker's yeast ( | 98.07 | |
| d1cjca1 | 225 | Adrenodoxin reductase of mitochondrial p450 system | 98.0 | |
| d1dxla2 | 123 | Dihydrolipoamide dehydrogenase {Garden pea (Pisum | 98.0 | |
| d1aoga2 | 117 | Trypanothione reductase {Trypanosoma cruzi [TaxId: | 97.96 | |
| d1jnra2 | 356 | Adenylylsulfate reductase A subunit {Archaeon Arch | 97.92 | |
| d3c96a1 | 288 | Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: | 97.9 | |
| d1k0ia1 | 292 | p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a | 97.89 | |
| d2voua1 | 265 | Dihydroxypyridine hydroxylase DhpH {Arthrobacter n | 97.86 | |
| d2bcgg1 | 297 | Guanine nucleotide dissociation inhibitor, GDI {Ba | 97.86 | |
| d1mo9a1 | 261 | NADH-dependent 2-ketopropyl coenzyme M oxidoreduct | 97.83 | |
| d1pn0a1 | 360 | Phenol hydroxylase {Soil-living yeast (Trichosporo | 97.78 | |
| d3c96a1 | 288 | Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: | 97.77 | |
| d1q1ra1 | 185 | Putidaredoxin reductase {Pseudomonas putida [TaxId | 97.74 | |
| d1dxla1 | 221 | Dihydrolipoamide dehydrogenase {Garden pea (Pisum | 97.65 | |
| d3coxa1 | 370 | Cholesterol oxidase of GMC family {Brevibacterium | 97.64 | |
| d1lqta1 | 216 | Ferredoxin:NADP reductase FprA {Mycobacterium tube | 97.59 | |
| d1cjca2 | 230 | Adrenodoxin reductase of mitochondrial p450 system | 97.55 | |
| d1djqa2 | 156 | Trimethylamine dehydrogenase, C-terminal domain {M | 97.55 | |
| d1gesa1 | 217 | Glutathione reductase {Escherichia coli [TaxId: 56 | 97.52 | |
| d1k0ia1 | 292 | p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a | 97.51 | |
| d1n4wa1 | 367 | Cholesterol oxidase of GMC family {Streptomyces sp | 97.49 | |
| d1kdga1 | 360 | Flavoprotein domain of flavocytochrome cellobiose | 97.47 | |
| d1djqa3 | 233 | Trimethylamine dehydrogenase, middle domain {Methy | 97.47 | |
| d1lqta2 | 239 | Ferredoxin:NADP reductase FprA {Mycobacterium tube | 97.35 | |
| d1ju2a1 | 351 | Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxI | 97.25 | |
| d1gpea1 | 391 | Glucose oxidase {Penicillium amagasakiense [TaxId: | 97.22 | |
| d1cf3a1 | 385 | Glucose oxidase {Aspergillus niger [TaxId: 5061]} | 97.17 | |
| d1lvla1 | 220 | Dihydrolipoamide dehydrogenase {Pseudomonas putida | 97.14 | |
| d1ps9a2 | 162 | 2,4-dienoyl-CoA reductase, C-terminal domain {Esch | 97.1 | |
| d1kifa1 | 246 | D-aminoacid oxidase, N-terminal domain {Pig (Sus s | 97.09 | |
| d1h6va1 | 235 | Mammalian thioredoxin reductase {Rat (Rattus norve | 97.06 | |
| d1xdia1 | 233 | Dihydrolipoamide dehydrogenase {Mycobacterium tube | 97.01 | |
| d3lada1 | 229 | Dihydrolipoamide dehydrogenase {Azotobacter vinela | 96.95 | |
| d1jnra2 | 356 | Adenylylsulfate reductase A subunit {Archaeon Arch | 96.87 | |
| d1ebda1 | 223 | Dihydrolipoamide dehydrogenase {Bacillus stearothe | 96.71 | |
| d3grsa1 | 221 | Glutathione reductase {Human (Homo sapiens) [TaxId | 96.58 | |
| d1rp0a1 | 278 | Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara | 96.56 | |
| d2iida1 | 370 | L-aminoacid oxidase {Malayan pit viper (Calloselas | 96.4 | |
| d1seza1 | 373 | Protoporphyrinogen oxidase {Tobacco (Nicotiana tab | 96.39 | |
| d2jfga1 | 93 | UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase | 96.27 | |
| d1n4wa1 | 367 | Cholesterol oxidase of GMC family {Streptomyces sp | 96.06 | |
| d1l7da1 | 183 | Nicotinamide nucleotide transhydrogenase dI compon | 95.85 | |
| d3coxa1 | 370 | Cholesterol oxidase of GMC family {Brevibacterium | 95.8 | |
| d2dw4a2 | 449 | Lysine-specific histone demethylase 1, LSD1 {Human | 95.75 | |
| d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 95.75 | |
| d2bi7a1 | 314 | UDP-galactopyranose mutase, N-terminal domain {Kle | 95.69 | |
| d1e5qa1 | 182 | Saccharopine reductase {Rice blast fungus (Magnapo | 95.6 | |
| d1c0pa1 | 268 | D-aminoacid oxidase, N-terminal domain {Rhodotorul | 95.56 | |
| d2ivda1 | 347 | Protoporphyrinogen oxidase {Myxococcus xanthus [Ta | 95.52 | |
| d1bg6a2 | 184 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A | 95.41 | |
| d1fcda2 | 141 | Flavocytochrome c sulfide dehydrogenase, FCSD, fla | 95.36 | |
| d1b5qa1 | 347 | Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} | 95.36 | |
| d1w4xa2 | 235 | Phenylacetone monooxygenase {Thermobifida fusca [T | 95.25 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 95.05 | |
| d1d5ta1 | 336 | Guanine nucleotide dissociation inhibitor, GDI {Co | 94.82 | |
| d1ez4a1 | 146 | Lactate dehydrogenase {Lactobacillus pentosus [Tax | 94.8 | |
| d1ks9a2 | 167 | Ketopantoate reductase PanE {Escherichia coli [Tax | 94.78 | |
| d1pjqa1 | 113 | Siroheme synthase CysG, domain 1 {Salmonella typhi | 94.71 | |
| d1i8ta1 | 298 | UDP-galactopyranose mutase, N-terminal domain {Esc | 94.68 | |
| d1kyqa1 | 150 | Bifunctional dehydrogenase/ferrochelatase Met8p, N | 94.44 | |
| d1vg0a1 | 491 | Rab escort protein 1 {Rat (Rattus norvegicus) [Tax | 94.4 | |
| d2hmva1 | 134 | Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | 94.36 | |
| d1mv8a2 | 202 | GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos | 94.21 | |
| d1f0ya2 | 192 | Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum | 94.21 | |
| d1kyqa1 | 150 | Bifunctional dehydrogenase/ferrochelatase Met8p, N | 94.18 | |
| d1pn0a1 | 360 | Phenol hydroxylase {Soil-living yeast (Trichosporo | 94.14 | |
| d2gv8a1 | 335 | Flavin-dependent monoxygenase SPBP16F5.08c {Schizo | 94.13 | |
| d2v5za1 | 383 | Monoamine oxidase B {Human (Homo sapiens) [TaxId: | 94.1 | |
| d1pjqa1 | 113 | Siroheme synthase CysG, domain 1 {Salmonella typhi | 93.89 | |
| d1pzga1 | 154 | Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5 | 93.83 | |
| d1ryia1 | 276 | Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | 93.8 | |
| d1f0ya2 | 192 | Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum | 93.79 | |
| d1n1ea2 | 189 | Glycerol-3- phosphate dehydrogenase {Trypanosome ( | 93.72 | |
| d2gqfa1 | 253 | Hypothetical protein HI0933 {Haemophilus influenza | 93.72 | |
| d1wdka3 | 186 | Fatty oxidation complex alpha subunit, middle doma | 93.65 | |
| d1ojta1 | 229 | Dihydrolipoamide dehydrogenase {Neisseria meningit | 93.64 | |
| d2i0za1 | 251 | Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396] | 93.58 | |
| d1v59a1 | 233 | Dihydrolipoamide dehydrogenase {Baker's yeast (Sac | 93.47 | |
| d1wdka3 | 186 | Fatty oxidation complex alpha subunit, middle doma | 93.37 | |
| d1gtea3 | 153 | Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su | 93.3 | |
| d1e5qa1 | 182 | Saccharopine reductase {Rice blast fungus (Magnapo | 93.15 | |
| d2jfga1 | 93 | UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase | 92.94 | |
| d1pj5a2 | 305 | N,N-dimethylglycine oxidase {Arthrobacter globifor | 92.79 | |
| d1bg6a2 | 184 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A | 92.74 | |
| d1ks9a2 | 167 | Ketopantoate reductase PanE {Escherichia coli [Tax | 92.57 | |
| d2gf3a1 | 281 | Sarcosine oxidase {Bacillus sp., strain b0618 [Tax | 92.55 | |
| d1txga2 | 180 | Glycerol-3- phosphate dehydrogenase {Archaeoglobus | 92.23 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 91.98 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 91.37 | |
| d1i0za1 | 160 | Lactate dehydrogenase {Human (Homo sapiens), heart | 91.34 | |
| d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 91.25 | |
| d1ldna1 | 148 | Lactate dehydrogenase {Bacillus stearothermophilus | 91.15 | |
| d2pv7a2 | 152 | Prephenate dehydrogenase TyrA {Haemophilus influen | 90.91 | |
| d1dlja2 | 196 | UDP-glucose dehydrogenase (UDPGDH) {Streptococcus | 90.88 | |
| d1y0pa2 | 308 | Flavocytochrome c3 (respiratory fumarate reductase | 90.45 | |
| d1nyta1 | 170 | Shikimate 5-dehydrogenase AroE {Escherichia coli [ | 90.37 | |
| d2gv8a2 | 107 | Flavin-dependent monoxygenase SPBP16F5.08c {Schizo | 90.03 | |
| d1guza1 | 142 | Malate dehydrogenase {Chlorobium vibrioforme [TaxI | 89.81 | |
| d1y6ja1 | 142 | Lactate dehydrogenase {Clostridium thermocellum [T | 89.62 | |
| d1gpja2 | 159 | Glutamyl tRNA-reductase middle domain {Archaeon Me | 89.6 | |
| d1j6ua1 | 89 | UDP-N-acetylmuramate-alanine ligase MurC {Thermoto | 89.47 | |
| d2hmva1 | 134 | Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | 89.46 | |
| d1llda1 | 143 | Lactate dehydrogenase {Bifidobacterium longum, str | 89.43 | |
| d1hyha1 | 146 | L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La | 89.42 | |
| d1trba2 | 126 | Thioredoxin reductase {Escherichia coli [TaxId: 56 | 89.34 | |
| d1nyta1 | 170 | Shikimate 5-dehydrogenase AroE {Escherichia coli [ | 89.3 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 89.16 | |
| d1d4ca2 | 322 | Flavocytochrome c3 (respiratory fumarate reductase | 89.04 | |
| d2gmha1 | 380 | Electron transfer flavoprotein-ubiquinone oxidored | 88.97 | |
| d1uxja1 | 142 | Malate dehydrogenase {Chloroflexus aurantiacus [Ta | 88.93 | |
| d1fl2a2 | 126 | Alkyl hydroperoxide reductase subunit F (AhpF), C- | 88.89 | |
| d1ojua1 | 142 | Malate dehydrogenase {Archaeon Archaeoglobus fulgi | 88.67 | |
| d1jaya_ | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae | 88.67 | |
| d1hyea1 | 145 | MJ0490, lactate/malate dehydrogenase {Archaeon Met | 88.27 | |
| d1id1a_ | 153 | Rck domain from putative potassium channel Kch {Es | 88.14 | |
| d2gjca1 | 311 | Thiazole biosynthetic enzyme Thi4 {Baker's yeast ( | 88.13 | |
| d1mlda1 | 144 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 88.09 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 88.06 | |
| d1a5za1 | 140 | Lactate dehydrogenase {Thermotoga maritima [TaxId: | 88.05 | |
| d1a9xa4 | 121 | Carbamoyl phosphate synthetase (CPS), large subuni | 88.05 | |
| d2ldxa1 | 159 | Lactate dehydrogenase {Mouse (Mus musculus) [TaxId | 87.96 | |
| d1l7da1 | 183 | Nicotinamide nucleotide transhydrogenase dI compon | 87.95 | |
| d1kjqa2 | 111 | Glycinamide ribonucleotide transformylase PurT, N- | 87.84 | |
| d2f5va1 | 379 | Pyranose 2-oxidase {White-rot fungus (Peniophora s | 87.83 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 87.79 | |
| d1id1a_ | 153 | Rck domain from putative potassium channel Kch {Es | 87.61 | |
| d2bs2a2 | 336 | Fumarate reductase {Wolinella succinogenes [TaxId: | 87.6 | |
| d1lqta1 | 216 | Ferredoxin:NADP reductase FprA {Mycobacterium tube | 87.58 | |
| d1a9xa4 | 121 | Carbamoyl phosphate synthetase (CPS), large subuni | 87.54 | |
| d3etja2 | 78 | N5-carboxyaminoimidazole ribonucleotide synthetase | 87.51 | |
| d1qo8a2 | 317 | Flavocytochrome c3 (respiratory fumarate reductase | 87.42 | |
| d1vdca2 | 130 | Thioredoxin reductase {Mouse-ear cress (Arabidopsi | 87.39 | |
| d1kjqa2 | 111 | Glycinamide ribonucleotide transformylase PurT, N- | 86.82 | |
| d1kifa1 | 246 | D-aminoacid oxidase, N-terminal domain {Pig (Sus s | 86.74 | |
| d1npya1 | 167 | Shikimate 5-dehydrogenase-like protein HI0607 {Hae | 86.72 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 86.71 | |
| d1n1ea2 | 189 | Glycerol-3- phosphate dehydrogenase {Trypanosome ( | 86.54 | |
| d1a9xa3 | 127 | Carbamoyl phosphate synthetase (CPS), large subuni | 86.43 | |
| d1t2da1 | 150 | Lactate dehydrogenase {Malaria parasite (Plasmodiu | 85.8 | |
| d1jaya_ | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae | 85.72 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 85.7 | |
| d1qyda_ | 312 | Pinoresinol-lariciresinol reductase {Giant arborvi | 85.63 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 85.34 | |
| d1li4a1 | 163 | S-adenosylhomocystein hydrolase {Human (Homo sapie | 84.59 | |
| d3cuma2 | 162 | Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru | 84.5 | |
| d1mv8a2 | 202 | GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos | 84.5 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 84.27 | |
| d1vpda2 | 161 | Hydroxyisobutyrate dehydrogenase {Salmonella typhi | 84.17 | |
| d2c5aa1 | 363 | GDP-mannose-3', 5'-epimerase {Thale cress (Arabido | 84.04 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 83.83 | |
| d1p3da1 | 96 | UDP-N-acetylmuramate-alanine ligase MurC {Haemophi | 83.82 | |
| d3etja2 | 78 | N5-carboxyaminoimidazole ribonucleotide synthetase | 83.72 | |
| d1o6za1 | 142 | Malate dehydrogenase {Archaeon Haloarcula marismor | 83.08 | |
| d1hdoa_ | 205 | Biliverdin IX beta reductase {Human (Homo sapiens) | 82.88 | |
| d1i36a2 | 152 | Conserved hypothetical protein MTH1747 {Archaeon M | 82.75 | |
| d1d1ta2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 82.63 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 82.54 | |
| d2pgda2 | 176 | 6-phosphogluconate dehydrogenase {Sheep (Ovis orie | 82.43 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 82.37 | |
| d1txga2 | 180 | Glycerol-3- phosphate dehydrogenase {Archaeoglobus | 82.16 | |
| d1jw9b_ | 247 | Molybdenum cofactor biosynthesis protein MoeB {Esc | 82.09 | |
| d1kdga1 | 360 | Flavoprotein domain of flavocytochrome cellobiose | 82.03 | |
| d1pgja2 | 178 | 6-phosphogluconate dehydrogenase {Trypanosoma bruc | 81.95 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 81.79 | |
| d2pv7a2 | 152 | Prephenate dehydrogenase TyrA {Haemophilus influen | 81.73 | |
| d1li4a1 | 163 | S-adenosylhomocystein hydrolase {Human (Homo sapie | 81.57 | |
| d1neka2 | 330 | Succinate dehydogenase {Escherichia coli [TaxId: 5 | 81.41 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 81.38 | |
| d2dt5a2 | 126 | Transcriptional repressor Rex, C-terminal domain { | 81.36 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 81.3 | |
| d1p3da1 | 96 | UDP-N-acetylmuramate-alanine ligase MurC {Haemophi | 81.19 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 80.66 | |
| d1qyda_ | 312 | Pinoresinol-lariciresinol reductase {Giant arborvi | 80.51 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 80.06 |
| >d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=100.00 E-value=9.4e-33 Score=261.74 Aligned_cols=213 Identities=27% Similarity=0.471 Sum_probs=167.9
Q ss_pred ccEEEECCChHHHHHHHHHHhC---CCcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhhccCCCc
Q 008860 73 FDLFTIGAGSGGVRASRFAANF---GASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDESNGFGW 149 (551)
Q Consensus 73 ~dVvIIGgG~aGl~aA~~l~~~---G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~ 149 (551)
.+|+||||||||++||.++++. +++|+||| +..+||+|+|+||+|+|.|+..++..+.+++...||+
T Consensus 2 ~~viVIG~GpaG~~aA~~aa~~~~~~~~V~liE----------k~~~GG~cln~GciPsK~ll~~a~~~~~~~~~~~~G~ 71 (233)
T d1xdia1 2 TRIVILGGGPAGYEAALVAATSHPETTQVTVID----------CDGIGGAAVLDDCVPSKTFIASTGLRTELRRAPHLGF 71 (233)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHCTTTEEEEEEE----------SSCTTHHHHHTSHHHHHHHHHHHHHHHHHTTTTTTTB
T ss_pred cEEEEECCCHHHHHHHHHHHHcCCCCCEEEEEe----------cCCCCceeecccccccEEEEeecchhhhhhhhhhcCC
Confidence 4899999999999999998874 46899999 7789999999999999999999999999999999998
Q ss_pred ccC-CCCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEeEEEEecCC------EEEE---cC--EEEEeCeEEEcC
Q 008860 150 KYG-TEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIEGRGKIVDPH------TVDV---DG--KLYSARHILISV 217 (551)
Q Consensus 150 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~i~~~------~v~v---~g--~~~~~d~lviAt 217 (551)
.+. ....++|..+..+...............++..+|+++.+.+.+++.. .+.+ ++ .++.+|.+++||
T Consensus 72 ~i~~~~~~~d~~~~~~~~~~v~~~~~~~~~~~~~~~gV~vi~G~~~~~~~~~~~~~~~v~v~~~dg~~~~i~ad~viiAt 151 (233)
T d1xdia1 72 HIDFDDAKISLPQIHARVKTLAAAQSADITAQLLSMGVQVIAGRGELIDSTPGLARHRIKATAADGSTSEHEADVVLVAT 151 (233)
T ss_dssp C------CBCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESEEEECCSSSCCSSEEEEEECTTSCEEEEEESEEEECC
T ss_pred cccccCceeeeeeeccccceeeeeeecceehhhcccceeEEECcccccccccccccceEEEEecCCceeeeecceeeeec
Confidence 755 34678999999888877777777788888999999999877766532 2222 11 234455555555
Q ss_pred CCCCCCCCCCCCCceecchhhhcCCCCCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCCCCCHHHHHHHHHHHH
Q 008860 218 GGRPFIPDIPGSEYAIDSDAALDLPSKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRDFVAEQMS 297 (551)
Q Consensus 218 G~~p~~p~i~g~~~~~~~~~~~~~~~~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~ 297 (551)
|.+|+.++.
T Consensus 152 G~~p~~~~~----------------------------------------------------------------------- 160 (233)
T d1xdia1 152 GASPRILPS----------------------------------------------------------------------- 160 (233)
T ss_dssp CEEECCCGG-----------------------------------------------------------------------
T ss_pred Ccccccccc-----------------------------------------------------------------------
Confidence 444332210
Q ss_pred hcCcEEEcCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCcCCCCCCCCccccCeeecCCCCeEeCCCCCCCCCcEE
Q 008860 298 LRGIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNTKNLGLEKVGVKMTKNGAIEVDEYSGTAVPSIW 377 (551)
Q Consensus 298 ~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~t~~~~vy 377 (551)
|..++.+.++++..+++++++|+|.||++|||++|+||
T Consensus 161 ------------------------------------------~~~~~~~~l~l~~~gv~~~~~G~I~vd~~~~T~~~gIy 198 (233)
T d1xdia1 161 ------------------------------------------GSVPNTSGLGLERVGIQLGRGNYLTVDRVSRTLATGIY 198 (233)
T ss_dssp ------------------------------------------CEEECCSSSCTTTTTCCCBTTTBCCCCSSSBCSSTTEE
T ss_pred ------------------------------------------cccccccccccchhhhcccCCCcCCcCCCcccCCCCEE
Confidence 12233445567888999999999999999999999999
Q ss_pred EeCcCCCCCCChHHHHHhHHHHHHHHcCCCC
Q 008860 378 AVGDVTDRINLTPVALMEGGALAKTLFQAEP 408 (551)
Q Consensus 378 a~GD~~~~~~~~~~A~~~g~~aa~~i~g~~~ 408 (551)
|+|||++.+.+++.|..||++||.||+|...
T Consensus 199 A~GDv~~~~~l~~~A~~~g~~aa~~~~g~~~ 229 (233)
T d1xdia1 199 AAGDCTGLLPLASVAAMQGRIAMYHALGEGV 229 (233)
T ss_dssp ECSGGGTSCSCHHHHHHHHHHHHHHHTTCCC
T ss_pred EEEEeCCCchhHHHHHHHHHHHHHHHcCCCC
Confidence 9999999999999999999999999998654
|
| >d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=100.00 E-value=2e-32 Score=257.67 Aligned_cols=216 Identities=35% Similarity=0.594 Sum_probs=190.5
Q ss_pred CccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhhccCCCccc
Q 008860 72 DFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDESNGFGWKY 151 (551)
Q Consensus 72 ~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~~ 151 (551)
+|||+||||||||++||.++++.|++|+||| +..+||+|.+.+|+|++.++..............+++..
T Consensus 3 ~~DviVIG~GpaGl~aA~~aar~G~kV~vIE----------k~~~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (223)
T d1ebda1 3 ETETLVVGAGPGGYVAAIRAAQLGQKVTIVE----------KGNLGGVCLNVGCIPSKALISASHRYEQAKHSEEMGIKA 72 (223)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHTTCCEEEEE----------SSCTTHHHHHTSHHHHHHHHHHHHHHHHHHTCGGGTEEC
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCEEEEEe----------cCCCCcceeccccccccccccccchhhhhhhhhhhcccc
Confidence 6999999999999999999999999999999 788999999999999999999888888777777776654
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEeEEEEecCCEEEE----cCEEEEeCeEEEcCCCCCCCCCCC
Q 008860 152 GTEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIEGRGKIVDPHTVDV----DGKLYSARHILISVGGRPFIPDIP 227 (551)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~i~~~~v~v----~g~~~~~d~lviAtG~~p~~p~i~ 227 (551)
. ...+++..+..+....+..+...+...+...+++++.+++.+.+.....+ +...+..+.+|+|+|..|..
T Consensus 73 ~-~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~V~~i~G~a~f~~~~~~~v~~~~~~~~~~~~~iiIa~g~~p~~---- 147 (223)
T d1ebda1 73 E-NVTIDFAKVQEWKASVVKKLTGGVEGLLKGNKVEIVKGEAYFVDANTVRVVNGDSAQTYTFKNAIIATGSRPIE---- 147 (223)
T ss_dssp C-SCEECHHHHHHHHHHHHHHHHHHHHHHHHTTTCEEEESEEEEEETTEEEEEETTEEEEEECSEEEECCCEEECC----
T ss_pred h-hheeeHHHHhhHHHHHHHHHHhhHHHhhhccceeeeccEEEEccCcccceeccccceEEecccEEEEcCCCccc----
Confidence 3 45678888888888888888888888888999999999999998887776 45678999999999876531
Q ss_pred CCCceecchhhhcCCCCCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCCCCCHHHHHHHHHHHHhcCcEEEcCc
Q 008860 228 GSEYAIDSDAALDLPSKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRDFVAEQMSLRGIEFHTEE 307 (551)
Q Consensus 228 g~~~~~~~~~~~~~~~~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~~~~ 307 (551)
T Consensus 148 -------------------------------------------------------------------------------- 147 (223)
T d1ebda1 148 -------------------------------------------------------------------------------- 147 (223)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccEEEEEcCCceEEEEECCCeEEEeeEEEEecCcCCCCCCCCccccCeeecCCCCeEeCCCCCCCCCcEEEeCcCCCCCC
Q 008860 308 SPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNTKNLGLEKVGVKMTKNGAIEVDEYSGTAVPSIWAVGDVTDRIN 387 (551)
Q Consensus 308 ~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~t~~~~vya~GD~~~~~~ 387 (551)
++|+.|+++.|++++.|++++++|+|.||+++|||+|+|||+|||++.+.
T Consensus 148 ------------------------------~~G~~p~~~~l~l~~~gv~~~~~G~I~vd~~~~T~~~gvyA~GDv~~~~~ 197 (223)
T d1ebda1 148 ------------------------------LVGRRPNTDELGLEQIGIKMTNRGLIEVDQQCRTSVPNIFAIGDIVPGPA 197 (223)
T ss_dssp ------------------------------BSCEEESCSSSSTTTTTCCBCTTSCBCCCTTCBCSSTTEEECGGGSSSCC
T ss_pred ------------------------------cccceecCCCCChHhcCceECCCCCEeECCCCCCCCCCEEEEeccCCCcc
Confidence 25888999998899999999999999999999999999999999999999
Q ss_pred ChHHHHHhHHHHHHHHcCCCCCCCCC
Q 008860 388 LTPVALMEGGALAKTLFQAEPTKPDY 413 (551)
Q Consensus 388 ~~~~A~~~g~~aa~~i~g~~~~~~~~ 413 (551)
+++.|..||++||++|+|.+ .+.+|
T Consensus 198 ~~~~A~~~g~~aa~~i~g~~-~~~dy 222 (223)
T d1ebda1 198 LAHKASYEGKVAAEAIAGHP-SAVDY 222 (223)
T ss_dssp CHHHHHHHHHHHHHHHTSCC-CCCCC
T ss_pred cHHHHHHHHHHHHHHHcCCC-CCCCC
Confidence 99999999999999999865 34454
|
| >d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.9e-32 Score=257.58 Aligned_cols=212 Identities=40% Similarity=0.693 Sum_probs=186.6
Q ss_pred CccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhhccCCCccc
Q 008860 72 DFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDESNGFGWKY 151 (551)
Q Consensus 72 ~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~~ 151 (551)
+|||+||||||||++||.++++.|++|+||| ++.+||+|.+.||+|++.++..+...+.......+.+..
T Consensus 3 ~yDviIIG~GpaG~~aA~~aar~G~kV~vIE----------k~~~GG~c~n~g~~~~k~l~~~a~~~~~~~~~~~~~~~~ 72 (221)
T d3grsa1 3 SYDYLVIGGGSGGLASARRAAELGARAAVVE----------SHKLGGTCVNVGCVPKKVMWNTAVHSEFMHDHADYGFPS 72 (221)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHTTCCEEEEE----------SSCTTHHHHHHSHHHHHHHHHHHHHHHHHHTTGGGTSCC
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCCEEEEEe----------ccCCCCccccchhhhhhhhhhHHHHHHHHhhhhhccccc
Confidence 5999999999999999999999999999999 788999999999999999999988777766666655543
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEeEEEEecCCEEE--EcCEEEEeCeEEEcCCCCCCCCCCCCC
Q 008860 152 GTEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIEGRGKIVDPHTVD--VDGKLYSARHILISVGGRPFIPDIPGS 229 (551)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~i~~~~v~--v~g~~~~~d~lviAtG~~p~~p~i~g~ 229 (551)
....+++.....+....+..+.......++..+|+++.+.+.+...+.+. .....+..+.++++||+.|..|.
T Consensus 73 -~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~gV~~i~G~a~~~~~~~~~~~~~~~~~~~~~~~iatG~~p~vp~---- 147 (221)
T d3grsa1 73 -CEGKFNWRVIKEKRDAYVSRLNAIYQNNLTKSHIEIIRGHAAFTSDPKPTIEVSGKKYTAPHILIATGGMPSTPH---- 147 (221)
T ss_dssp -CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESCCEECSCSSCEEEETTEEEECSCEEECCCEEECCCC----
T ss_pred -cccchhhhhhhhhhheEEeeeccchhhhhccCceEEEEEeeeeccccceeeeeeccccccceeEEecCccccCCC----
Confidence 35678899988888888888888888889999999999998887765444 36788999999999999887663
Q ss_pred CceecchhhhcCCCCCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCCCCCHHHHHHHHHHHHhcCcEEEcCccc
Q 008860 230 EYAIDSDAALDLPSKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRDFVAEQMSLRGIEFHTEESP 309 (551)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~~~~~v 309 (551)
T Consensus 148 -------------------------------------------------------------------------------- 147 (221)
T d3grsa1 148 -------------------------------------------------------------------------------- 147 (221)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEEEcCCceEEEEECCCeEEEeeEEEEecCcCCCCCCCCccccCeeecCCCCeEeCCCCCCCCCcEEEeCcCCCCCCCh
Q 008860 310 QAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNTKNLGLEKVGVKMTKNGAIEVDEYSGTAVPSIWAVGDVTDRINLT 389 (551)
Q Consensus 310 ~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~t~~~~vya~GD~~~~~~~~ 389 (551)
|+.|+++.|+|++.|++++++|+|.||+++|||+|+|||+|||++.+.++
T Consensus 148 ------------------------------~r~p~~~~l~L~~~gv~~~~~G~I~vd~~~~T~~~gvyA~GDv~~~~~l~ 197 (221)
T d3grsa1 148 ------------------------------ERVPNTKDLSLNKLGIQTDDKGHIIVDEFQNTNVKGIYAVGDVCGKALLT 197 (221)
T ss_dssp ------------------------------TEEESCTTTTGGGTTCCBCTTSCBCCCTTCBCSSTTEEECGGGGTSSCCH
T ss_pred ------------------------------ccccCCCCcCchhcCcEECCCccEEeCCCccccCCcEEEEEEccCCcCcH
Confidence 34688888889999999999999999999999999999999999999999
Q ss_pred HHHHHhHHHHHHHHcCCCC
Q 008860 390 PVALMEGGALAKTLFQAEP 408 (551)
Q Consensus 390 ~~A~~~g~~aa~~i~g~~~ 408 (551)
+.|..||++||++|++.+.
T Consensus 198 ~~A~~~G~~aa~~~~~~~~ 216 (221)
T d3grsa1 198 PVAIAAGRKLAHRLFEYKE 216 (221)
T ss_dssp HHHHHHHHHHHHHHHSCCT
T ss_pred HHHHHHHHHHHHHHcCCCC
Confidence 9999999999999998653
|
| >d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Mammalian thioredoxin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=100.00 E-value=5.2e-32 Score=257.09 Aligned_cols=226 Identities=37% Similarity=0.659 Sum_probs=188.9
Q ss_pred CCccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhhccCCCcc
Q 008860 71 YDFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDESNGFGWK 150 (551)
Q Consensus 71 ~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~ 150 (551)
.+|||+||||||||++||+++++.|++|+|||+.. .........+||+|.+.||+|++.+.....+.+...+...||+.
T Consensus 2 ~dYDviVIG~GpaGl~aA~~aa~~G~kV~viE~~~-~~~~~~~~~~GG~c~~~g~~~~k~l~~~~~~~~~~~~~~~~gi~ 80 (235)
T d1h6va1 2 YDFDLIIIGGGSGGLAAAKEAAKFDKKVMVLDFVT-PTPLGTNWGLGGTCVNVGCIPKKLMHQAALLGQALKDSRNYGWK 80 (235)
T ss_dssp CSEEEEEECCSHHHHHHHHHHGGGCCCEEEECCCC-CCTTCCCCCTTHHHHHHSHHHHHHHHHHHHHHHHHHHTTTTTBC
T ss_pred ccCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccC-CCCcccccccccccccccccchhhhhhhhhhhhHhhhhhccccc
Confidence 36999999999999999999999999999999311 11222346689999999999999999999999999999999998
Q ss_pred cCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEeEEEEecCCEEEE---c--CEEEEeCeEEEcCCCCCCCCC
Q 008860 151 YGTEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIEGRGKIVDPHTVDV---D--GKLYSARHILISVGGRPFIPD 225 (551)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~i~~~~v~v---~--g~~~~~d~lviAtG~~p~~p~ 225 (551)
.......++..+..+....+..+...+...+++.+|+++.++..+.+++.+.+ . ...+.++.+++++|++|+.++
T Consensus 81 ~~~~~~~d~~~~~~~~~~~i~~l~~g~~~~l~~~~V~vi~G~~~~~~~~~~~v~~~~~~~~~i~a~~ivi~~G~~p~~~~ 160 (235)
T d1h6va1 81 LEDTVKHDWEKMTESVQNHIGSLNWGYRVALREKKVVYENAYGKFIGPHKIMATNNKGKEKVYSAERFLIATGERPRYLG 160 (235)
T ss_dssp CCSCCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEECCEEEEEETTEEEEECTTSCEEEEEEEEEEECCCEEECCCS
T ss_pred cccceeechhhhhheeeeeeeeccchhhhhhhccCceEEEeEEeeccccceecccccccccccccccceeecCCCceeEE
Confidence 88788899999999999888888888888899999999999999999988877 2 246899999999999987654
Q ss_pred CCCCCceecchhhhcCCCCCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCCCCCHHHHHHHHHHHHhcCcEEEc
Q 008860 226 IPGSEYAIDSDAALDLPSKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRDFVAEQMSLRGIEFHT 305 (551)
Q Consensus 226 i~g~~~~~~~~~~~~~~~~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~~ 305 (551)
+
T Consensus 161 i------------------------------------------------------------------------------- 161 (235)
T d1h6va1 161 I------------------------------------------------------------------------------- 161 (235)
T ss_dssp S-------------------------------------------------------------------------------
T ss_pred E-------------------------------------------------------------------------------
Confidence 3
Q ss_pred CcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCcCCCCCCCCccccCeeecC-CCCeEeCCCCCCCCCcEEEeCcCCC
Q 008860 306 EESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNTKNLGLEKVGVKMTK-NGAIEVDEYSGTAVPSIWAVGDVTD 384 (551)
Q Consensus 306 ~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~~~~l~l~~~gl~~~~-~G~i~vd~~~~t~~~~vya~GD~~~ 384 (551)
..+++..++++..+++++. .|+|.||+++|||+|+|||+|||+.
T Consensus 162 -----------------------------------~~~~~~~~~l~~~gv~l~~~~g~I~vd~~~~TsvpgIyA~GDv~~ 206 (235)
T d1h6va1 162 -----------------------------------RDSCTRTIGLETVGVKINEKTGKIPVTDEEQTNVPYIYAIGDILE 206 (235)
T ss_dssp -----------------------------------EEESCTTSCCTTTTCCCCSSSCCBCCCTTSBCSSTTEEECGGGBT
T ss_pred -----------------------------------eeccceeeccccceeeeccccCccccCCccccCCCCEEEEEeccC
Confidence 1111222235566777775 5899999999999999999999986
Q ss_pred -CCCChHHHHHhHHHHHHHHcCCCCCCC
Q 008860 385 -RINLTPVALMEGGALAKTLFQAEPTKP 411 (551)
Q Consensus 385 -~~~~~~~A~~~g~~aa~~i~g~~~~~~ 411 (551)
.+.+++.|+.||++||++|+|+++.+.
T Consensus 207 g~~~l~~~A~~eG~~aa~~~~g~~~~~~ 234 (235)
T d1h6va1 207 GKLELTPVAIQAGRLLAQRLYGGSTVKC 234 (235)
T ss_dssp TSCCCHHHHHHHHHHHHHHHHHCCCCCC
T ss_pred CCcccHHHHHHHHHHHHHHHcCCCCCCC
Confidence 467999999999999999998776443
|
| >d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=99.97 E-value=4.1e-31 Score=248.37 Aligned_cols=211 Identities=31% Similarity=0.486 Sum_probs=178.0
Q ss_pred CCccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHh-hhccCCCc
Q 008860 71 YDFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEF-DESNGFGW 149 (551)
Q Consensus 71 ~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~-~~~~~~g~ 149 (551)
.+|||+||||||||++||.++++.|.+|+|||+ ...+||+|.+.+|+|++.+...+...... ..+..+++
T Consensus 2 ~~yDvvVIGgGpaGl~aA~~aa~~G~kV~vie~---------~~~~GG~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~g~ 72 (221)
T d1dxla1 2 DENDVVIIGGGPGGYVAAIKAAQLGFKTTCIEK---------RGALGGTCLNVGCIPSKALLHSSHMYHEAKHSFANHGV 72 (221)
T ss_dssp CCCCEEEECCSHHHHHHHHHHHHHTCCEEEEEC---------SSSSCCSHHHHSHHHHHHHHHHHHHHHHHHHTHHHHTE
T ss_pred CcCCEEEECCCHHHHHHHHHHHHCCCcEEEEEe---------cCCCCCeeecchhhhhhhhhHhHHHHHHHhhhhhhcCe
Confidence 469999999999999999999999999999993 56789999999999999888776554433 33445555
Q ss_pred ccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEeEEEEecCCEEEE-----cCEEEEeCeEEEcCCCCCCCC
Q 008860 150 KYGTEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIEGRGKIVDPHTVDV-----DGKLYSARHILISVGGRPFIP 224 (551)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~i~~~~v~v-----~g~~~~~d~lviAtG~~p~~p 224 (551)
... ...+.+.....+.......+...+..++...+++++.+.+.+.++..... ....+.+|++|+|||++|
T Consensus 73 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~a~~VIiATGs~~--- 148 (221)
T d1dxla1 73 KVS-NVEIDLAAMMGQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFVSPSEISVDTIEGENTVVKGKHIIIATGSDV--- 148 (221)
T ss_dssp EES-CEEECHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEESCEEEEETTEEEECCSSSCCEEEECSEEEECCCEEE---
T ss_pred ecc-cceecHHHHHHHHHHHHHHHhhHHHHhhhcCCeEEEEeccccccccccccccccccccccccceEEEeECCCc---
Confidence 433 34556666666766677777777777888889999999999988887766 467889999999999753
Q ss_pred CCCCCCceecchhhhcCCCCCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCCCCCHHHHHHHHHHHHhcCcEEE
Q 008860 225 DIPGSEYAIDSDAALDLPSKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRDFVAEQMSLRGIEFH 304 (551)
Q Consensus 225 ~i~g~~~~~~~~~~~~~~~~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~ 304 (551)
T Consensus 149 -------------------------------------------------------------------------------- 148 (221)
T d1dxla1 149 -------------------------------------------------------------------------------- 148 (221)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCcCCCCCCCCccccCeeecCCCCeEeCCCCCCCCCcEEEeCcCCC
Q 008860 305 TEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNTKNLGLEKVGVKMTKNGAIEVDEYSGTAVPSIWAVGDVTD 384 (551)
Q Consensus 305 ~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~t~~~~vya~GD~~~ 384 (551)
.|+.|+++.|+++..|++++++|+|.||+++||++|+|||+|||+.
T Consensus 149 ----------------------------------~gr~p~~~~l~l~~~gv~~~~~G~i~vd~~~~T~v~gi~A~GDv~~ 194 (221)
T d1dxla1 149 ----------------------------------KGRTPFTSGLNLDKIGVETDKLGRILVNERFSTNVSGVYAIGDVIP 194 (221)
T ss_dssp ----------------------------------CCEEECCTTSCCTTTTCCBCSSSCBCCCTTCBCSSTTEEECSTTSS
T ss_pred ----------------------------------cCccccCCCCChHhcCceEcCCCcEEeCCCcccCCCCEEEEeccCC
Confidence 2677999888889999999999999999999999999999999999
Q ss_pred CCCChHHHHHhHHHHHHHHcCCCC
Q 008860 385 RINLTPVALMEGGALAKTLFQAEP 408 (551)
Q Consensus 385 ~~~~~~~A~~~g~~aa~~i~g~~~ 408 (551)
.+.+++.|..+|++||++|+|+..
T Consensus 195 g~~l~~~A~~~g~~aa~~i~g~~~ 218 (221)
T d1dxla1 195 GPMLAHKAEEDGVACVEYLAGKVG 218 (221)
T ss_dssp SCCCHHHHHHHHHHHHHHHTTSCC
T ss_pred CcccHHHHHHHHHHHHHHHcCCCC
Confidence 999999999999999999998653
|
| >d1feca1 c.3.1.5 (A:1-169,A:287-357) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Crithidia fasciculata [TaxId: 5656]
Probab=99.97 E-value=7.8e-31 Score=249.74 Aligned_cols=226 Identities=41% Similarity=0.684 Sum_probs=183.2
Q ss_pred CCccEEEECCChHHHHHHHHHHhCCC-cEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhhccCCCc
Q 008860 71 YDFDLFTIGAGSGGVRASRFAANFGA-SVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDESNGFGW 149 (551)
Q Consensus 71 ~~~dVvIIGgG~aGl~aA~~l~~~G~-~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~ 149 (551)
++||||||||||||++||.++++.|. +|+|+|+.... .......+||+|.+.||+|+|.++..+++.+.+++...||+
T Consensus 2 k~YDvvVIG~GpAG~~aAi~aa~~g~k~V~vie~~~~~-~~~~~~~iGGtc~~~gcip~K~l~~~a~~~~~~~~~~~~Gi 80 (240)
T d1feca1 2 RAYDLVVIGAGSGGLEAGWNAASLHKKRVAVIDLQKHH-GPPHYAALGGTCVNVGCVPKKLMVTGANYMDTIRESAGFGW 80 (240)
T ss_dssp CSEEEEEECCSHHHHHHHHHHHHHHCCCEEEEESCSSS-BTTTBSCTTCHHHHHSHHHHHHHHHHHHHHHHHHHGGGGTE
T ss_pred CccCEEEECCCHHHHHHHHHHHHcCCCEEEEEEEeccC-Ccccccccccccccccchhhhhccccccccccccccccccc
Confidence 57999999999999999999999885 69999932111 12224458999999999999999999999999999999998
Q ss_pred ccCC-CCCCChHHHHHHHHHHHHHHHHHHHHHHHhC-CeEEEEeEEEEecCCEEEE---------cCEEEEeCeEEEcCC
Q 008860 150 KYGT-EPQHDWSTLIANKNAELQRLTGIYKNILINA-GITLIEGRGKIVDPHTVDV---------DGKLYSARHILISVG 218 (551)
Q Consensus 150 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~i~~~~v~v---------~g~~~~~d~lviAtG 218 (551)
.... ...+||+.+..+....+..+...++..+.+. +++++.+.+.+.+...... ..+.+.+|.+++++|
T Consensus 81 ~~~~~~v~~d~~~l~~~k~~~v~~~~~~~~~~l~~~~~v~i~~g~a~~~~~~~~~~~~~~~~~~~~~e~i~~~~i~ia~G 160 (240)
T d1feca1 81 ELDRESVRPNWKALIAAKNKAVSGINDSYEGMFADTEGLTFHQGFGALQDNHTVLVRESADPNSAVLETLDTEYILLATG 160 (240)
T ss_dssp ECCGGGCEECHHHHHHHHHHHHHHHHHHHHHHHHTSTTEEEEESEEEEEETTEEEEESSSSTTSCEEEEEEEEEEEECCC
T ss_pred cccccccccCHHHHHHHhhcEEeccccceeeeeccCCcEEEEEeeccccccccccccccccccccceEEEecceEEEecC
Confidence 7653 3467999999999888888887777777654 6999999988888776554 235678888888888
Q ss_pred CCCCCCCCCCCCceecchhhhcCCCCCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCCCCCHHHHHHHHHHHHh
Q 008860 219 GRPFIPDIPGSEYAIDSDAALDLPSKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRDFVAEQMSL 298 (551)
Q Consensus 219 ~~p~~p~i~g~~~~~~~~~~~~~~~~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~ 298 (551)
++|....+
T Consensus 161 ~~p~~~~~------------------------------------------------------------------------ 168 (240)
T d1feca1 161 SWPQHLGI------------------------------------------------------------------------ 168 (240)
T ss_dssp EEECCCCS------------------------------------------------------------------------
T ss_pred CceeEccc------------------------------------------------------------------------
Confidence 77643211
Q ss_pred cCcEEEcCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCcCCCCCCCCccccCeeecCCCCeEeCCCCCCCCCcEEE
Q 008860 299 RGIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNTKNLGLEKVGVKMTKNGAIEVDEYSGTAVPSIWA 378 (551)
Q Consensus 299 ~Gv~i~~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~t~~~~vya 378 (551)
..|+...|+++.++++++++|+|.||+++|||+|+|||
T Consensus 169 ------------------------------------------~~~~~~~l~l~~~gv~~~~~G~I~vd~~~~Ts~~~iyA 206 (240)
T d1feca1 169 ------------------------------------------EVPRSQTLQLEKAGVEVAKNGAIKVDAYSKTNVDNIYA 206 (240)
T ss_dssp ------------------------------------------BEESCTTSCGGGGTCCBCTTSCBCCCTTCBCSSTTEEE
T ss_pred ------------------------------------------cccccCCCCccccCeEECCCCcEEcCcccCcCCCCEEE
Confidence 00233334578889999999999999999999999999
Q ss_pred eCcCCCCCCChHHHHHhHHHHHHHHcCCCCCCC
Q 008860 379 VGDVTDRINLTPVALMEGGALAKTLFQAEPTKP 411 (551)
Q Consensus 379 ~GD~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~ 411 (551)
+|||++.+.+++.|..||++||++++++++.+.
T Consensus 207 ~GDv~~~~~~~~~A~~eg~~aa~~~~~~~~~~~ 239 (240)
T d1feca1 207 IGDVTDRVMLTPVAINEGAAFVDTVFANKPRAT 239 (240)
T ss_dssp CGGGGCSCCCHHHHHHHHHHHHHHHHSSCCCCC
T ss_pred EEECCCCccchhhHHHHHHHHHHHHhCCCCCCC
Confidence 999999999999999999999999999765443
|
| >d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase species: Xanthobacter sp., py2 [TaxId: 35809]
Probab=99.97 E-value=1.2e-30 Score=251.65 Aligned_cols=217 Identities=23% Similarity=0.336 Sum_probs=171.8
Q ss_pred CCCCccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhhccCCC
Q 008860 69 SHYDFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDESNGFG 148 (551)
Q Consensus 69 ~~~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g 148 (551)
.+++||+||||||++|+.+|..+++.|.+|++||+ ...+||+|.++||+|++.+...++.......+....
T Consensus 39 ~~k~yDvvVIGgG~aG~~aA~~~a~~G~kv~vve~---------~~~lGG~c~n~GcvP~k~l~~~a~~~~~~~~~~~~~ 109 (261)
T d1mo9a1 39 DPREYDAIFIGGGAAGRFGSAYLRAMGGRQLIVDR---------WPFLGGSCPHNACVPHHLFSDCAAELMLARTFSGQY 109 (261)
T ss_dssp CCSCBSEEEECCSHHHHHHHHHHHHTTCCEEEEES---------SSSSSCHHHHHSHHHHHHHHHHHHHHHHHHHTTTST
T ss_pred CCccCCEEEECCCHHHHHHHHHHHHCCCeEEEEec---------cCccccccccccccchHHHHhhHHhHHHHHHhhhhc
Confidence 34579999999999999999999999999999993 567899999999999999999988877776654433
Q ss_pred c-ccCCCCCCChHHHHHHHHHHHHHHHHHH-HHHHHhC-CeEEEEeEEEEecCCEEEEcCEEEEeCeEEEcCCCCCCCCC
Q 008860 149 W-KYGTEPQHDWSTLIANKNAELQRLTGIY-KNILINA-GITLIEGRGKIVDPHTVDVDGKLYSARHILISVGGRPFIPD 225 (551)
Q Consensus 149 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~v~~~~~~~~~i~~~~v~v~g~~~~~d~lviAtG~~p~~p~ 225 (551)
+ ........++.................. ....... ...++.+.+.+++++++.++++.+++|.+++|+|.+|+.|+
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~d~~~v~~~g~~i~ad~viiAtG~~P~~~~ 189 (261)
T d1mo9a1 110 WFPDMTEKVVGIKEVVDLFRAGRNGPHGIMNFQSKEQLNLEYILNCPAKVIDNHTVEAAGKVFKAKNLILAVGAGPGTLD 189 (261)
T ss_dssp TCCCCTTCCCCHHHHHHHHHHHTHHHHHHHHHHHHHTSCCCEEESSCCEEEETTEEEETTEEEEBSCEEECCCEECCCCC
T ss_pred cccccccccccHHHHHHHHHHHHHhhhhhHHHHhhhcccceeEeeeEEEEeeecccccccceEeeeeeeeccCCCCCcCc
Confidence 3 3333455778777766555444433322 1223333 45566788999999999999999999999999999999998
Q ss_pred CCCCCceecchhhhcCCCCCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCCCCCHHHHHHHHHHHHhcCcEEEc
Q 008860 226 IPGSEYAIDSDAALDLPSKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRDFVAEQMSLRGIEFHT 305 (551)
Q Consensus 226 i~g~~~~~~~~~~~~~~~~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~~ 305 (551)
+++.+...+..
T Consensus 190 i~~~~~~~~l~--------------------------------------------------------------------- 200 (261)
T d1mo9a1 190 VPEQPRSAELA--------------------------------------------------------------------- 200 (261)
T ss_dssp STCEECCHHHH---------------------------------------------------------------------
T ss_pred ccccccccccc---------------------------------------------------------------------
Confidence 87643211111
Q ss_pred CcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCcCCCCCCCCccccCeeecCCCCeEeCCCCCCCCCcEEEeCcCCCC
Q 008860 306 EESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNTKNLGLEKVGVKMTKNGAIEVDEYSGTAVPSIWAVGDVTDR 385 (551)
Q Consensus 306 ~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~t~~~~vya~GD~~~~ 385 (551)
+..|++++++|+|.||+++||++|+|||+|||++.
T Consensus 201 ---------------------------------------------~~~Gl~~~~~G~I~Vn~~~~Ts~~~IyA~GDv~~~ 235 (261)
T d1mo9a1 201 ---------------------------------------------KILGLDLGPKGEVLVNEYLQTSVPNVYAVGDLIGG 235 (261)
T ss_dssp ---------------------------------------------HHHTCCBCTTSCBCCCTTSBCSSTTEEECGGGGCS
T ss_pred ---------------------------------------------cceeeeeccCCEEEeCCCcccCCCCEEEEEEeCCC
Confidence 11256778899999999999999999999999999
Q ss_pred CCChHHHHHhHHHHHHHHcCCCC
Q 008860 386 INLTPVALMEGGALAKTLFQAEP 408 (551)
Q Consensus 386 ~~~~~~A~~~g~~aa~~i~g~~~ 408 (551)
+.+++.|..||++||.||+|++.
T Consensus 236 ~~l~~~A~~~G~~aa~~i~G~k~ 258 (261)
T d1mo9a1 236 PMEMFKARKSGCYAARNVMGEKI 258 (261)
T ss_dssp SCSHHHHHHHHHHHHHHHTTCCC
T ss_pred cccHHHHHHHHHHHHHHHCCCCC
Confidence 99999999999999999999653
|
| >d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=99.97 E-value=1.2e-29 Score=238.09 Aligned_cols=211 Identities=29% Similarity=0.499 Sum_probs=174.0
Q ss_pred CCccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhhcc---CC
Q 008860 71 YDFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDESN---GF 147 (551)
Q Consensus 71 ~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~---~~ 147 (551)
.+||+|||||||||++||..+++.|.+|+||| ++.+||+|.|+||+|++.++......+...+.. .+
T Consensus 4 ~~~DlvVIG~GpaGl~aA~~aa~~G~~V~liE----------~~~~GG~c~~~gc~p~k~~~~~~~~~~~~~~~~~~~~~ 73 (220)
T d1lvla1 4 IQTTLLIIGGGPGGYVAAIRAGQLGIPTVLVE----------GQALGGTCLNIGCIPSKALIHVAEQFHQASRFTEPSPL 73 (220)
T ss_dssp EECSEEEECCSHHHHHHHHHHHHHTCCEEEEC----------SSCTTHHHHHHSHHHHHHHHHHHHHHHHHHHTTSCCTT
T ss_pred cccCEEEECCCHHHHHHHHHHHHCCCcEEEEe----------cCCCCCcccccccccchhhhhhHHHHhhhhhccccccc
Confidence 46999999999999999999999999999999 678999999999999999998877666655443 34
Q ss_pred CcccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEeEEEEecCCEEEEcCEEEEeCeEEEcCCCCCCCCCCC
Q 008860 148 GWKYGTEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIEGRGKIVDPHTVDVDGKLYSARHILISVGGRPFIPDIP 227 (551)
Q Consensus 148 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~i~~~~v~v~g~~~~~d~lviAtG~~p~~p~i~ 227 (551)
++... ....++.....+....+..............+++++.++..+.+...+..++..+.+|.+++|||++|..++.
T Consensus 74 g~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~v~~i~G~~~~~~~~~~~~~~~~i~a~~viiAtG~~p~~lp~- 151 (220)
T d1lvla1 74 GISVA-SPRLDIGQSVAWKDGIVDRLTTGVAALLKKHGVKVVHGWAKVLDGKQVEVDGQRIQCEHLLLATGSSSVELPR- 151 (220)
T ss_dssp CCCCC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECSCEEEEETTEEEETTEEEECSEEEECCCEEECCBTE-
T ss_pred eEEec-cceehHHHHhhhheeEEeeeccchhhhhccCceEEEEeeecccCcccccccceeEeeceeeEcCCCCcccccc-
Confidence 44432 5677889888888888888878888888899999999999999999999999999999999999999875430
Q ss_pred CCCceecchhhhcCCCCCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCCCCCHHHHHHHHHHHHhcCcEEEcCc
Q 008860 228 GSEYAIDSDAALDLPSKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRDFVAEQMSLRGIEFHTEE 307 (551)
Q Consensus 228 g~~~~~~~~~~~~~~~~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~~~~ 307 (551)
T Consensus 152 -------------------------------------------------------------------------------- 151 (220)
T d1lvla1 152 -------------------------------------------------------------------------------- 151 (220)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccEEEEEcCCceEEEEECCCeEEEeeEEEEecCcCCCCCCCCccccCeeecCCCCeEeCCCCCCCCCcEEEeCcCCCCCC
Q 008860 308 SPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNTKNLGLEKVGVKMTKNGAIEVDEYSGTAVPSIWAVGDVTDRIN 387 (551)
Q Consensus 308 ~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~t~~~~vya~GD~~~~~~ 387 (551)
.|....+++...+++++ +|+|.||+++||++|+|||+|||++.+.
T Consensus 152 ----------------------------------~~~~~~~~~~~~~~~~~-~g~i~vd~~~~T~~~~I~A~GDv~~~~~ 196 (220)
T d1lvla1 152 ----------------------------------RPRTKGFNLECLDLKMN-GAAIAIDERCQTSMHNVWAIGDVAGEPM 196 (220)
T ss_dssp ----------------------------------EECCSSSSGGGSCCCEE-TTEECCCTTCBCSSTTEEECGGGGCSSC
T ss_pred ----------------------------------cccccCCcceeeehhhc-CCcccccchhhcCCCCEEEEEEeCCccc
Confidence 00000011222333334 4789999999999999999999999999
Q ss_pred ChHHHHHhHHHHHHHHcCCCC
Q 008860 388 LTPVALMEGGALAKTLFQAEP 408 (551)
Q Consensus 388 ~~~~A~~~g~~aa~~i~g~~~ 408 (551)
+++.|..||++++++|+|+..
T Consensus 197 l~~~a~~~g~~~a~~i~G~~~ 217 (220)
T d1lvla1 197 LAHRAMAQGEMVAEIIAGKAR 217 (220)
T ss_dssp CHHHHHHHHHHHHHHHTTCCC
T ss_pred chhhhhhhHHHHHHHHcCCCC
Confidence 999999999999999998654
|
| >d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.96 E-value=1.4e-29 Score=239.76 Aligned_cols=229 Identities=27% Similarity=0.374 Sum_probs=181.7
Q ss_pred CCCCCccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhh-hccC
Q 008860 68 PSHYDFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFD-ESNG 146 (551)
Q Consensus 68 ~~~~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~-~~~~ 146 (551)
+|+++|||+||||||||++||.+|++.|++|+|||+ .+.+||+|.+.||+|++.++.......... .+..
T Consensus 1 ~m~~~yDviVIG~GpAGl~aA~~aa~~G~kV~lie~---------~~~~GG~~~~~g~~p~~~~~~~~~~~~~~~~~~~~ 71 (233)
T d1v59a1 1 TINKSHDVVIIGGGPAGYVAAIKAAQLGFNTACVEK---------RGKLGGTCLNVGCIPSKALLNNSHLFHQMHTEAQK 71 (233)
T ss_dssp CEEEEEEEEEECCSHHHHHHHHHHHHTTCCEEEEES---------SSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHTSGG
T ss_pred CCCcccCEEEECCCHHHHHHHHHHHHCCCcEEEEEe---------cCCcceEeEEeeccccccccccchhHHHhhhhHhh
Confidence 367789999999999999999999999999999993 567899999999999999998887776654 6788
Q ss_pred CCcccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEeEEEEecCCEEEEcCEEEEeCeEEEcCCCCCCCCCC
Q 008860 147 FGWKYGTEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIEGRGKIVDPHTVDVDGKLYSARHILISVGGRPFIPDI 226 (551)
Q Consensus 147 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~i~~~~v~v~g~~~~~d~lviAtG~~p~~p~i 226 (551)
||+........++.....+.......+......+.++.+++++.+++++++++.+.+.. ..|......
T Consensus 72 ~Gi~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~v~~~~G~a~f~~~~~~~v~~----------~~~~~~~~~-- 139 (233)
T d1v59a1 72 RGIDVNGDIKINVANFQKAKDDAVKQLTGGIELLFKKNKVTYYKGNGSFEDETKIRVTP----------VDGLEGTVK-- 139 (233)
T ss_dssp GTEEECSCEEECHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESEEEESSSSEEEEEC----------CTTCTTCCS--
T ss_pred cCeeEeeceecchhhhhheeeeEEEEeecceeeeeccCCeEEEEEEEEEecCCCcEEEe----------cccccceee--
Confidence 99887777778888888888888888888788888889999999999888876655410 011000000
Q ss_pred CCCCceecchhhhcCCCCCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCCCCCHHHHHHHHHHHHhcCcEEEcC
Q 008860 227 PGSEYAIDSDAALDLPSKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRDFVAEQMSLRGIEFHTE 306 (551)
Q Consensus 227 ~g~~~~~~~~~~~~~~~~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~~~ 306 (551)
. .. .
T Consensus 140 --------~----------~~-------------------------~--------------------------------- 143 (233)
T d1v59a1 140 --------E----------DH-------------------------I--------------------------------- 143 (233)
T ss_dssp --------S----------CE-------------------------E---------------------------------
T ss_pred --------e----------ee-------------------------e---------------------------------
Confidence 0 00 0
Q ss_pred cccEEEEEcCCceEEEEECCCeEEEeeEEEEecCcCCCCCCCCccccCeeecCCCCeEeCCCCCCCCCcEEEeCcCCCCC
Q 008860 307 ESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNTKNLGLEKVGVKMTKNGAIEVDEYSGTAVPSIWAVGDVTDRI 386 (551)
Q Consensus 307 ~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~t~~~~vya~GD~~~~~ 386 (551)
.+. -.+.. ...+..+.++|++|+++.|+++..|++++++|+|.||++++|++|+|||+||++..+
T Consensus 144 -----~~~-----~~i~i-----~~~~~~~~~~G~~p~~~~l~l~~~gv~~~~~g~i~vd~~~~T~~~~v~A~GD~~~g~ 208 (233)
T d1v59a1 144 -----LDV-----KNIIV-----ATGSEVTPFVGRRPYIAGLGAEKIGLEVDKRGRLVIDDQFNSKFPHIKVVGDVTFGP 208 (233)
T ss_dssp -----EEE-----EEEEE-----CCCEEECCCSCEEECCTTSCTTTTTCCBCTTSCBCCCTTSBCSSTTEEECGGGSSSC
T ss_pred -----ccC-----CeEEE-----ecccccceecccccCCCCcCchhcCeEEcCCCcEEECCeEecCCCCEEEEcCCcccH
Confidence 000 00111 112445567899999998889999999999999999999999999999999999999
Q ss_pred CChHHHHHhHHHHHHHHcCCCC
Q 008860 387 NLTPVALMEGGALAKTLFQAEP 408 (551)
Q Consensus 387 ~~~~~A~~~g~~aa~~i~g~~~ 408 (551)
.+++.|..+|+.|+++|+++..
T Consensus 209 ~l~~~a~~~G~~aa~~i~~~~~ 230 (233)
T d1v59a1 209 MLAHKAEEEGIAAVEMLKTGHG 230 (233)
T ss_dssp CCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHHHHccCCC
Confidence 9999999999999999997653
|
| >d1aoga1 c.3.1.5 (A:3-169,A:287-357) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Trypanosoma cruzi [TaxId: 5693]
Probab=99.96 E-value=3.2e-28 Score=230.97 Aligned_cols=223 Identities=39% Similarity=0.688 Sum_probs=171.4
Q ss_pred CCccEEEECCChHHHHHHHHHHhCCC-cEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhhccCCCc
Q 008860 71 YDFDLFTIGAGSGGVRASRFAANFGA-SVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDESNGFGW 149 (551)
Q Consensus 71 ~~~dVvIIGgG~aGl~aA~~l~~~G~-~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~ 149 (551)
++|||+||||||||++||.++++.|. +|+|+|+.... .......+||+|.|.||+|++.++..+++.+.++....+|.
T Consensus 2 ~~YDviIIG~GpaGl~aA~~aa~~g~k~V~iie~~~~~-~~~~~~~lGG~c~n~g~ip~k~l~~~a~~~~~~~~~~~~G~ 80 (238)
T d1aoga1 2 KIFDLVVIGAGSGGLEAAWNAATLYKKRVAVIDVQMVH-GPPFFSALGGTCVNVGCVPKKLMVTGAQYMEHLRESAGFGW 80 (238)
T ss_dssp CSBSEEEECCSHHHHHHHHHHHHTSCCCEEEEESCSSS-BTTTBCCTTHHHHHHSHHHHHHHHHHHHHHHHHHHGGGGTE
T ss_pred CccCEEEECCCHHHHHHHHHHHHcCCCEEEEEEeeccc-CccccccccccccccccccchhhhhhHHHHHHHHHHHhcCC
Confidence 47999999999999999999999876 68899843221 12224578999999999999999999999999999988887
Q ss_pred ccC-CCCCCChHHHHHHHHHHHHHHHHHHHHHH-HhCCeEEEEeEEEEecCCEEEEc---------CEEEEeCeEEEcCC
Q 008860 150 KYG-TEPQHDWSTLIANKNAELQRLTGIYKNIL-INAGITLIEGRGKIVDPHTVDVD---------GKLYSARHILISVG 218 (551)
Q Consensus 150 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~i~~~~v~v~---------g~~~~~d~lviAtG 218 (551)
.+. .....+|..+..+....+..+.......+ ...+++++.+.+.+.....+... .+.+.++.+++++|
T Consensus 81 ~~~~~~~~~d~~~l~~~k~~~v~~~~~~~~~~l~~~~gV~vi~g~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~v~i~~~ 160 (238)
T d1aoga1 81 EFDRTTLRAEWKNLIAVKDEAVLNINKSYDEMFRDTEGLEFFLGWGSLESKNVVNVRESADPASAVKERLETEHILLASG 160 (238)
T ss_dssp ECCGGGCEECHHHHHHHHHHHHHHHHHHHHHHHHHSTTEEEEESEEEEEETTEEEEESSSSTTSCEEEEEEBSCEEECCC
T ss_pred cccCccccccHHHHHHHHHHhhhccccceeeeeecccccEEEEEEeeccccccccccccccccccccccccccceeeecc
Confidence 654 24557899999998888888777777766 46789999988777655543320 01222222222222
Q ss_pred CCCCCCCCCCCCceecchhhhcCCCCCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCCCCCHHHHHHHHHHHHh
Q 008860 219 GRPFIPDIPGSEYAIDSDAALDLPSKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRDFVAEQMSL 298 (551)
Q Consensus 219 ~~p~~p~i~g~~~~~~~~~~~~~~~~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~ 298 (551)
..
T Consensus 161 ~~------------------------------------------------------------------------------ 162 (238)
T d1aoga1 161 SW------------------------------------------------------------------------------ 162 (238)
T ss_dssp EE------------------------------------------------------------------------------
T ss_pred cc------------------------------------------------------------------------------
Confidence 22
Q ss_pred cCcEEEcCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCcCCCCCCCCccccCeeecCCCCeEeCCCCCCCCCcEEE
Q 008860 299 RGIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNTKNLGLEKVGVKMTKNGAIEVDEYSGTAVPSIWA 378 (551)
Q Consensus 299 ~Gv~i~~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~t~~~~vya 378 (551)
+....|..|++..+.+...++.++ +|+|.||+++||++|+|||
T Consensus 163 ------------------------------------~~~~~~~~~~~~~l~~~~~gv~~~-~G~I~vde~~~T~~~~iyA 205 (238)
T d1aoga1 163 ------------------------------------PHMPNGRSPRTKDLQLQNAGVMIK-NGGVQVDEYSRTNVSNIYA 205 (238)
T ss_dssp ------------------------------------ECCCCCEEECCGGGCGGGTTCCEE-TTEECCCTTCBCSSTTEEE
T ss_pred ------------------------------------cccccccccceeeecccccEEEEc-CCeEEecCCeeeccCCEEE
Confidence 223345566666666677788876 6899999999999999999
Q ss_pred eCcCCCCCCChHHHHHhHHHHHHHHcCCCCC
Q 008860 379 VGDVTDRINLTPVALMEGGALAKTLFQAEPT 409 (551)
Q Consensus 379 ~GD~~~~~~~~~~A~~~g~~aa~~i~g~~~~ 409 (551)
+|||++.+.+++.|..||++||++|+|+++.
T Consensus 206 vGDv~~~~~l~~~A~~eg~~aa~~i~g~~~~ 236 (238)
T d1aoga1 206 IGDVTNRVMLTPVAINEAAALVDTVFGTTPR 236 (238)
T ss_dssp CGGGGTSCCCHHHHHHHHHHHHHHHHSSSCC
T ss_pred EEEecCCccchhhHHHHHHHHHHHHcCCCCC
Confidence 9999999999999999999999999997654
|
| >d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Neisseria meningitidis [TaxId: 487]
Probab=99.95 E-value=9.8e-28 Score=226.38 Aligned_cols=221 Identities=33% Similarity=0.490 Sum_probs=168.9
Q ss_pred CCccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhhccCCCcc
Q 008860 71 YDFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDESNGFGWK 150 (551)
Q Consensus 71 ~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~ 150 (551)
.+|||+|||||||||+||.+|++.|++|+|||+ ...+||+|.+.||+|++.+...++.....+....+|..
T Consensus 5 ~dyDviIIG~GPaGlsaA~~aa~~G~~V~viE~---------~~~~GG~~~~~g~~~~~~~~~~a~~~~~~~~~~~~G~~ 75 (229)
T d1ojta1 5 AEYDVVVLGGGPGGYSAAFAAADEGLKVAIVER---------YKTLGGVCLNVGCIPSKALLHNAAVIDEVRHLAANGIK 75 (229)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHHTTCCEEEEES---------SSCSSHHHHHHSHHHHHHHHHHHHHHHHHHHGGGGTCC
T ss_pred CccCEEEECcCHHHHHHHHHHHHCCCeEEEEec---------cCCCCCeeeccccchhhhhhhhhhhHHhhhhHhhcCCc
Confidence 469999999999999999999999999999993 46689999999999999999999988888888888876
Q ss_pred cCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEeEEEEecCCEEEEcCEEEEeCeEEEcCCCCCCCCCCCCCC
Q 008860 151 YGTEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIEGRGKIVDPHTVDVDGKLYSARHILISVGGRPFIPDIPGSE 230 (551)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~i~~~~v~v~g~~~~~d~lviAtG~~p~~p~i~g~~ 230 (551)
.. ...+.+..+..+.......+......+.....++++.+.+.+.++...........
T Consensus 76 ~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~vi~g~~~~~~~~~~~~~~~~~~--------------------- 133 (229)
T d1ojta1 76 YP-EPELDIDMLRAYKDGVVSRLTGGLAGMAKSRKVDVIQGDGQFLDPHHLEVSLTAGD--------------------- 133 (229)
T ss_dssp CC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTEEEEEEEEEE---------------------
T ss_pred cc-CCcccHHHHHHHHHHHHHHHhcchHhHhhcCceEEEEeeeeecCCccccccccccc---------------------
Confidence 54 46778888888877777777777777777888998887665554333221000000
Q ss_pred ceecchhhhcCCCCCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCCCCCHHHHHHHHHHHHhcCcEEEcCcccE
Q 008860 231 YAIDSDAALDLPSKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRDFVAEQMSLRGIEFHTEESPQ 310 (551)
Q Consensus 231 ~~~~~~~~~~~~~~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~~~~~v~ 310 (551)
. ...
T Consensus 134 -------------------------------------------------------------------------~---~~~ 137 (229)
T d1ojta1 134 -------------------------------------------------------------------------A---YEQ 137 (229)
T ss_dssp -------------------------------------------------------------------------E---TTE
T ss_pred -------------------------------------------------------------------------c---ccc
Confidence 0 000
Q ss_pred EEEEcCCceEEEEECCCeEEEeeEEEE-ecCcCCCCCCCCccccCeeecCCCCeEeCCCCCCCCCcEEEeCcCCCCCCCh
Q 008860 311 AILKSTDGSLSVKTNKGTVDGFSHVMF-ATGRRPNTKNLGLEKVGVKMTKNGAIEVDEYSGTAVPSIWAVGDVTDRINLT 389 (551)
Q Consensus 311 ~i~~~~~~~~~V~~~~G~~i~~d~vi~-a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~t~~~~vya~GD~~~~~~~~ 389 (551)
. ......+...++.+++ +.++.|++..+.++..|++++++|+|.||+++|||+|+|||+|||++.+.++
T Consensus 138 ---------~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~e~~g~~~d~~G~I~vd~~~~TsvpgVyAaGDv~~~~~l~ 207 (229)
T d1ojta1 138 ---------A-APTGEKKIVAFKNCIIAAGSRAPNGKLISAEKAGVAVTDRGFIEVDKQMRTNVPHIYAIGDIVGQPMLA 207 (229)
T ss_dssp ---------E-EEEEEEEEEEEEEEEECCCEEEECGGGTTGGGTTCCCCTTSCCCCCTTSBCSSTTEEECGGGTCSSCCH
T ss_pred ---------c-cccccccceecceEEEEecccCCcccccchhhhCccCCCCCCEEcCCCccCCCCCEEEEEecCCCcchH
Confidence 0 0000001233333444 4445566666568999999999999999999999999999999999999999
Q ss_pred HHHHHhHHHHHHHHcCCCC
Q 008860 390 PVALMEGGALAKTLFQAEP 408 (551)
Q Consensus 390 ~~A~~~g~~aa~~i~g~~~ 408 (551)
+.|+.||++||+||+|++.
T Consensus 208 ~~A~~eG~~Aa~~i~G~~~ 226 (229)
T d1ojta1 208 HKAVHEGHVAAENCAGHKA 226 (229)
T ss_dssp HHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHHcCCCC
Confidence 9999999999999998654
|
| >d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Azotobacter vinelandii [TaxId: 354]
Probab=99.95 E-value=6.1e-28 Score=227.40 Aligned_cols=219 Identities=33% Similarity=0.507 Sum_probs=173.7
Q ss_pred CCccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhhccCC-Cc
Q 008860 71 YDFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDESNGF-GW 149 (551)
Q Consensus 71 ~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~-g~ 149 (551)
++|||+||||||||++||++|++.|++|+|||+.. .......+||.|.+.||.|++.+...............+ ++
T Consensus 2 ~kYDviIIGgGpAGl~aA~~aar~G~~V~viE~~~---~~~~~~~~gg~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~gi 78 (229)
T d3lada1 2 QKFDVIVIGAGPGGYVAAIKSAQLGLKTALIEKYK---GKEGKTALGGTCLNVGCIPSKALLDSSYKFHEAHESFKLHGI 78 (229)
T ss_dssp CCCSEEEECCSHHHHHHHHHHHHHTCCEEEEECCB---CTTSSBCCSHHHHHHSHHHHHHHHHHHHHHHHHHTTSGGGTE
T ss_pred CcCCEEEECcCHHHHHHHHHHHHCCCeEEEEeccc---CCCccccccccccccccchhhhhhhhhhhhhhhhhhhhhccc
Confidence 57999999999999999999999999999999311 112245689999999999999988776665555544333 44
Q ss_pred ccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEeEEEEecCCEEEE-----cCEEEEeCeEEEcCCCCCCCC
Q 008860 150 KYGTEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIEGRGKIVDPHTVDV-----DGKLYSARHILISVGGRPFIP 224 (551)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~i~~~~v~v-----~g~~~~~d~lviAtG~~p~~p 224 (551)
. .....+++..+..+.......+......+++..+|+++.+...+.+...... +...+.++.+++|||++|..+
T Consensus 79 ~-~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~gV~vi~G~~~~~~~~~~~~~~~~~~~~~~~~~~~i~atG~~~~~~ 157 (229)
T d3lada1 79 S-TGEVAIDVPTMIARKDQIVRNLTGGVASLIKANGVTLFEGHGKLLAGKKVEVTAADGSSQVLDTENVILASGSKPVEI 157 (229)
T ss_dssp E-CSCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEESEEEECSTTCEEEECTTSCEEEECCSCEEECCCEEECCC
T ss_pred c-cCcceeecchhhhhhhHHHHHhhhhHHHHhhcCCeEEEEeEEcccccceeeccccCccceeeecccccccCCcccccc
Confidence 3 3356788999888888888888777888888899999999888877765554 345788999999999887543
Q ss_pred CCCCCCceecchhhhcCCCCCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCCCCCHHHHHHHHHHHHhcCcEEE
Q 008860 225 DIPGSEYAIDSDAALDLPSKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRDFVAEQMSLRGIEFH 304 (551)
Q Consensus 225 ~i~g~~~~~~~~~~~~~~~~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~ 304 (551)
+.
T Consensus 158 ~~------------------------------------------------------------------------------ 159 (229)
T d3lada1 158 PR------------------------------------------------------------------------------ 159 (229)
T ss_dssp TE------------------------------------------------------------------------------
T ss_pred cc------------------------------------------------------------------------------
Confidence 20
Q ss_pred cCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCcCCCCCCCCccccCeeecCCCCeEeCCCCCCCCCcEEEeCcCCC
Q 008860 305 TEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNTKNLGLEKVGVKMTKNGAIEVDEYSGTAVPSIWAVGDVTD 384 (551)
Q Consensus 305 ~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~t~~~~vya~GD~~~ 384 (551)
.+++..+.+++.|++++++|+|.||+++||++|+|||+|||+.
T Consensus 160 -------------------------------------~~~~~~~~~~~~gv~l~~~G~i~vd~~~~T~vpgiyA~GDv~~ 202 (229)
T d3lada1 160 -------------------------------------RPVTTDLLAADSGVTLDERGFIYVDDYCATSVPGVYAIGDVVR 202 (229)
T ss_dssp -------------------------------------EECCTTCCSSCCSCCBCTTSCBCCCTTSBCSSTTEEECGGGSS
T ss_pred -------------------------------------cccccccchHhcCeeecCCCcEEecccccCCCCCEEEEeCCcc
Confidence 0000111255668889999999999999999999999999999
Q ss_pred CCCChHHHHHhHHHHHHHHcCCCC
Q 008860 385 RINLTPVALMEGGALAKTLFQAEP 408 (551)
Q Consensus 385 ~~~~~~~A~~~g~~aa~~i~g~~~ 408 (551)
.+.+.+.|..+|+.+|++|+|.+.
T Consensus 203 g~~l~~~A~~~G~~aa~~i~g~~~ 226 (229)
T d3lada1 203 GAMLAHKASEEGVVVAERIAGHKA 226 (229)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHCCC
T ss_pred hHHHHHHHHHHHHHHHHHHcCCCC
Confidence 999999999999999999998764
|
| >d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Probab=99.95 E-value=8.4e-28 Score=224.89 Aligned_cols=211 Identities=38% Similarity=0.695 Sum_probs=182.1
Q ss_pred CCccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhh-hccCCCc
Q 008860 71 YDFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFD-ESNGFGW 149 (551)
Q Consensus 71 ~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~-~~~~~g~ 149 (551)
++|||+||||||||++||.+|++.|++|+||| ++.+||+|.++||+|++.+...+++.+.+. ....+++
T Consensus 1 k~yDvvVIG~G~aG~~aA~~a~~~G~kV~iiE----------~~~~GGtc~~~gc~p~k~l~~~a~~~~~~~~~~~~~g~ 70 (217)
T d1gesa1 1 KHYDYIAIGGGSGGIASINRAAMYGQKCALIE----------AKELGGTCVNVGCVPKKVMWHAAQIREAIHMYGPDYGF 70 (217)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHTTTCCEEEEE----------SSCTTHHHHHHSHHHHHHHHHHHHHHHHHHTTGGGGTE
T ss_pred CcCCEEEECCCHHHHHHHHHHHHCCCEEEEEe----------ccCcCCeEecccccccccchhhHHHHHHHHhhhhhcCc
Confidence 36999999999999999999999999999999 677999999999999999999998877665 3456666
Q ss_pred ccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEeEEEEecCCEEEEcCEEEEeCeEEEcCCCCCCCCCCCCC
Q 008860 150 KYGTEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIEGRGKIVDPHTVDVDGKLYSARHILISVGGRPFIPDIPGS 229 (551)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~i~~~~v~v~g~~~~~d~lviAtG~~p~~p~i~g~ 229 (551)
... ...++|..+..+....+..+...++..+.+.+|+++.+............++..+.++.+++|||+.|.+|++|+
T Consensus 71 ~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~gV~v~~~~~~~~~~~~~~~~~~~~~~~~~iiatG~~p~ip~ip~- 148 (217)
T d1gesa1 71 DTT-INKFNWETLIASRTAYIDRIHTSYENVLGKNNVDVIKGFARFVDAKTLEVNGETITADHILIATGGRPSHPREPA- 148 (217)
T ss_dssp EEE-EEEECHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESCCEEEETTEEEETTEEEEEEEEEECCCEEECCCEEES-
T ss_pred cCC-cccccHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEeeecccceeeeecCCCceeeeeeeeeecCccccCCCCCC-
Confidence 543 457889999999998888888888888999999999988888888888889999999999999999886654433
Q ss_pred CceecchhhhcCCCCCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCCCCCHHHHHHHHHHHHhcCcEEEcCccc
Q 008860 230 EYAIDSDAALDLPSKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRDFVAEQMSLRGIEFHTEESP 309 (551)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~~~~~v 309 (551)
T Consensus 149 -------------------------------------------------------------------------------- 148 (217)
T d1gesa1 149 -------------------------------------------------------------------------------- 148 (217)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEEEcCCceEEEEECCCeEEEeeEEEEecCcCCCCCCCCccccCeeecCCCCeEeCCCCCCCCCcEEEeCcCCCCCCCh
Q 008860 310 QAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNTKNLGLEKVGVKMTKNGAIEVDEYSGTAVPSIWAVGDVTDRINLT 389 (551)
Q Consensus 310 ~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~t~~~~vya~GD~~~~~~~~ 389 (551)
++.++++..++.++++|++.+|+.++|+.|+||++||+.....++
T Consensus 149 -----------------------------------~~~l~l~~~gv~~~~~~~i~~d~~~~t~~~~i~~iG~g~~g~ela 193 (217)
T d1gesa1 149 -----------------------------------NDNINLEAAGVKTNEKGYIVVDKYQNTNIEGIYAVGDNTGAVELT 193 (217)
T ss_dssp -----------------------------------CTTSCHHHHTCCBCTTSCBCCCTTSBCSSTTEEECSGGGTSCCCH
T ss_pred -----------------------------------cCCcccccccEEEcCCccEeeCchhccCCCcEEEECCCccHHHHH
Confidence 222234555677888899999999999999999999999999999
Q ss_pred HHHHHhHHHHHHHHcCCCC
Q 008860 390 PVALMEGGALAKTLFQAEP 408 (551)
Q Consensus 390 ~~A~~~g~~aa~~i~g~~~ 408 (551)
+.+.++|+.++.++++.++
T Consensus 194 ~~~~~~G~~v~~~~~~~~p 212 (217)
T d1gesa1 194 PVAVAAGRRLSERLFNNKP 212 (217)
T ss_dssp HHHHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHHHHhCCCC
Confidence 9999999999999998765
|
| >d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Plasmodium falciparum [TaxId: 5833]
Probab=99.95 E-value=4.7e-30 Score=247.11 Aligned_cols=172 Identities=29% Similarity=0.533 Sum_probs=140.4
Q ss_pred ccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhhccCCCcccC
Q 008860 73 FDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDESNGFGWKYG 152 (551)
Q Consensus 73 ~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~~~ 152 (551)
|||+||||||||++||.++++.|++|+||| ++.+||+|.|+||+|+|.|+..+++....++...||+..
T Consensus 2 yDviVIG~G~aG~~aA~~aa~~G~~V~liE----------~~~~GGtc~n~gciPsK~l~~~~~~~~~~~~~~~~G~~~- 70 (259)
T d1onfa1 2 YDLIVIGGGSGGMAAARRAARHNAKVALVE----------KSRLGGTCVNVGCVPKKIMFNAASVHDILENSRHYGFDT- 70 (259)
T ss_dssp BSEEEECCSHHHHHHHHHHHHTTCCEEEEE----------SSSTTHHHHHTSHHHHHHHHHHHHHHHHHHHGGGGTCCC-
T ss_pred ceEEEECCCHHHHHHHHHHHHCCCeEEEEe----------cCCCCCeEEeeCCcchHHHHhhhhcccchhccccccccc-
Confidence 899999999999999999999999999999 678999999999999999999999999999999999864
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEeEEEEecCCEEEE--------------cCEEEEeCeEEEcCC
Q 008860 153 TEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIEGRGKIVDPHTVDV--------------DGKLYSARHILISVG 218 (551)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~i~~~~v~v--------------~g~~~~~d~lviAtG 218 (551)
.+.++|..+.++....+..+...+...+++.+|+++.|++++++++++.+ +++.+++|+++||||
T Consensus 71 -~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~gV~vi~G~a~f~~~~~v~v~~~~~~~~~~~~~~~~~~i~a~~iiIATG 149 (259)
T d1onfa1 71 -KFSFNLPLLVERRDKYIQRLNNIYRQNLSKDKVDLYEGTASFLSENRILIKGTKDNNNKDNGPLNEEILEGRNILIAVG 149 (259)
T ss_dssp -CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESCCCCC--------------------------CBSSEEECCC
T ss_pred -hhhhhhhhHHhhhheeeeccccchhhhcccccceEEeeecccccccccccccceeccccccCccceEEEeeeeEEEecC
Confidence 47799999999999999999888888999999999999999988887766 234689999999999
Q ss_pred CCCC--CCCCCC--CC--ceecchhhhcCCCCCCeEEEEcCcHHH
Q 008860 219 GRPF--IPDIPG--SE--YAIDSDAALDLPSKPEKIAIVGGGYIA 257 (551)
Q Consensus 219 ~~p~--~p~i~g--~~--~~~~~~~~~~~~~~~~~vvViG~G~~g 257 (551)
++|. .+.+|+ ++ .++++++++.++..+ +..|+|+|++|
T Consensus 150 s~P~~~~~~~~~~~l~~~~i~ts~~~~~~d~~~-~t~Vig~gaiG 193 (259)
T d1onfa1 150 NKPVGRSPDTENLKLEKLNVETNNNYIVVDENQ-RTSVNNIYAVG 193 (259)
T ss_dssp CCBCCBCCTTTTSSCTTTTCCBSSSCEEECTTC-BCSSSSEEECS
T ss_pred CCCccccccccccccccceeeecccccccccCC-ceeEeeEEEEE
Confidence 9994 233444 33 467888888887766 55677887776
|
| >d1v59a3 d.87.1.1 (A:356-478) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CO dehydrogenase flavoprotein C-domain-like superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain domain: Dihydrolipoamide dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.93 E-value=4.3e-26 Score=190.88 Aligned_cols=111 Identities=27% Similarity=0.439 Sum_probs=106.1
Q ss_pred CCCccEEEecCCceEEeeCCHHHHHhcCCCeEEEEeeccCcccccccCCCcEEEEEEEECCCCeEEEEEEECCChhHHHH
Q 008860 413 YSAVPSAVFSQPPIGQVGLSEEQAIQEYGDIDVFTANFRPLKATLSGLPDRIFMKLVLCAKTNKVLGLHMCGEDAPEIVQ 492 (551)
Q Consensus 413 ~~~~~~~~~~~~~~~~vGl~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~~~~~~ilG~~~~g~~~~e~i~ 492 (551)
|+.+|+++|++|++++||+||+||++++.++.+...++..+.+++..+++.||+|+++|++||+|||++++|++|+|+|+
T Consensus 1 Y~~iP~~vft~PeiA~VGlte~eA~~~g~~~~v~~~~~~~~~ra~~~~~~~G~~Kli~d~~~~~ilGa~ivG~~A~elI~ 80 (123)
T d1v59a3 1 YNNIPSVMYSHPEVAWVGKTEEQLKEAGIDYKIGKFPFAANSRAKTNQDTEGFVKILIDSKTERILGAHIIGPNAGEMIA 80 (123)
T ss_dssp TTSCCEEECSSSEEEEEECCHHHHHHTTCCEEEEEEEGGGCHHHHHTTCCCCEEEEEEETTTCBEEEEEEEETTHHHHHH
T ss_pred CCCCCEEeecCCccEEEECCHHHHHhcccCceEEEEecccccchhccCCCcEEEEEEEECCCCEEEEEEEEchHHHHHHH
Confidence 67899999999999999999999999998999999999999888888889999999999999999999999999999999
Q ss_pred HHHHHHHCCCCHHHHccCcccCCCchHHHHH
Q 008860 493 GFAVAVKAGLTKADFDATVGVHPTAAEEFVT 523 (551)
Q Consensus 493 ~~~~~i~~~~~~~~l~~~~~~~pt~~e~~~~ 523 (551)
.+++||++|+|++||.+++++|||++|.+.+
T Consensus 81 ~~alai~~~~t~~~l~~~i~~hPT~sE~~~~ 111 (123)
T d1v59a3 81 EAGLALEYGASAEDVARVCHAHPTLSEAFKE 111 (123)
T ss_dssp HHHHHHHTTCBHHHHHTSCCCTTCTTHHHHH
T ss_pred HHHHHHHcCCcHHHHHhcccCCCcHHHHHHH
Confidence 9999999999999999999999999999765
|
| >d1feca3 d.87.1.1 (A:358-485) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CO dehydrogenase flavoprotein C-domain-like superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain domain: Trypanothione reductase species: Crithidia fasciculata [TaxId: 5656]
Probab=99.93 E-value=7.7e-27 Score=196.56 Aligned_cols=126 Identities=39% Similarity=0.686 Sum_probs=115.4
Q ss_pred CCCccEEEecCCceEEeeCCHHHHHhcCCCeEEEEeeccCcccccccC-CCcEEEEEEEECCCCeEEEEEEECCChhHHH
Q 008860 413 YSAVPSAVFSQPPIGQVGLSEEQAIQEYGDIDVFTANFRPLKATLSGL-PDRIFMKLVLCAKTNKVLGLHMCGEDAPEIV 491 (551)
Q Consensus 413 ~~~~~~~~~~~~~~~~vGl~~~~a~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~kl~~~~~~~~ilG~~~~g~~~~e~i 491 (551)
|..+|+++|++|++++||+||+||++++.++.++..+|.++.++.... ...+++|+++|++||+|||+|++|++|+|+|
T Consensus 1 y~~VP~aVfT~PeiA~VGlte~eA~~~g~~~~v~~~~~~~~~~a~~~~~~~~~~~klv~~~~~g~iLGa~ivG~~A~ElI 80 (128)
T d1feca3 1 HTKVACAVFSIPPMGVCGYVEEDAAKKYDQVAVYESSFTPLMHNISGSTYKKFMVRIVTNHADGEVLGVHMLGDSSPEII 80 (128)
T ss_dssp CSSCCEEECCSSCEEEEECCHHHHHHHCSEEEEEEEEECCHHHHHHSCTTCCEEEEEEEETTTTEEEEEEEESTTHHHHH
T ss_pred CCCCCEEecCCCcceEEECCHHHHhhhhcCcceeecccchHHHHHhccccccceEEEeecCCCCceeEEEEECCCHHHHH
Confidence 568999999999999999999999999988999999998888876554 4456899999999999999999999999999
Q ss_pred HHHHHHHHCCCCHHHHccCcccCCCchHHHHHHHhhhhhhcCCCCCC
Q 008860 492 QGFAVAVKAGLTKADFDATVGVHPTAAEEFVTLRTPTRKIRKSPPSE 538 (551)
Q Consensus 492 ~~~~~~i~~~~~~~~l~~~~~~~pt~~e~~~~~~~~~~~~~~~~~~~ 538 (551)
+.++++|++|+|++||.+++++|||++|+|.+|++.+..++..|..|
T Consensus 81 ~~~~~ai~~~~t~~~l~~~i~~hPT~sE~l~~~~~~a~~~~~~~~~~ 127 (128)
T d1feca3 81 QSVAICLKMGAKISDFYNTIGVHPTSAEELCSMRTPAYFYEKGKRVE 127 (128)
T ss_dssp HHHHHHHHTTCBHHHHHTSCCCSSCSGGGGGSCCSCSEEEETTEEEC
T ss_pred HHHHHHHHcCCcHHHHhcCcCCCCcHHHHHHHHHHHHHHHhcccccc
Confidence 99999999999999999999999999999999999999888877544
|
| >d3grsa3 d.87.1.1 (A:364-478) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CO dehydrogenase flavoprotein C-domain-like superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain domain: Glutathione reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.93 E-value=3.7e-26 Score=188.90 Aligned_cols=112 Identities=48% Similarity=0.863 Sum_probs=104.7
Q ss_pred CCCccEEEecCCceEEeeCCHHHHHhcC--CCeEEEEeeccCcccccccCCCcEEEEEEEECCCCeEEEEEEECCChhHH
Q 008860 413 YSAVPSAVFSQPPIGQVGLSEEQAIQEY--GDIDVFTANFRPLKATLSGLPDRIFMKLVLCAKTNKVLGLHMCGEDAPEI 490 (551)
Q Consensus 413 ~~~~~~~~~~~~~~~~vGl~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~~~~~~ilG~~~~g~~~~e~ 490 (551)
|..+|+++|++|++++||+||+||++++ .++.+...++....+++..++..||+|+++|+++++|||+|++|++|+|+
T Consensus 1 Y~~vP~~vft~PeiA~VGltE~eA~~~~~~~~v~~~~~~~~~~~~a~~~~~~~g~~k~i~~~~~~~ilG~~ivG~~A~El 80 (115)
T d3grsa3 1 YNNIPTVVFSHPPIGTVGLTEDEAIHKYGIENVKTYSTSFTPMYHAVTKRKTKCVMKMVCANKEEKVVGIHMQGLGCDEM 80 (115)
T ss_dssp CTTCCEEECCSSCEEEEECCHHHHHHHHCGGGEEEEEEEECCGGGGGCSSCCCEEEEEEEETTTTEEEEEEEESTTHHHH
T ss_pred CCCCCEEecCcCccEEEecCcHHHHHHhCCcccceeEeeeeecchhhcccccceeEEEEEecCCceEEEEEEeccCHHHH
Confidence 5689999999999999999999999884 36888888899999998888999999999999999999999999999999
Q ss_pred HHHHHHHHHCCCCHHHHccCcccCCCchHHHHHH
Q 008860 491 VQGFAVAVKAGLTKADFDATVGVHPTAAEEFVTL 524 (551)
Q Consensus 491 i~~~~~~i~~~~~~~~l~~~~~~~pt~~e~~~~~ 524 (551)
|+.++++|++++|++||.+++++|||++|++..|
T Consensus 81 I~~~~~ai~~~~t~~~l~~~i~~hPT~sE~l~~l 114 (115)
T d3grsa3 81 LQGFAVAVKMGATKADFDNTVAIHPTSSEELVTL 114 (115)
T ss_dssp HHHHHHHHHTTCBHHHHHTSCCCSSCSGGGGGSC
T ss_pred HHHHHHHHHcCCCHHHHhhCccCCCCHHHHHHhc
Confidence 9999999999999999999999999999997754
|
| >d3lada3 d.87.1.1 (A:349-472) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CO dehydrogenase flavoprotein C-domain-like superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain domain: Dihydrolipoamide dehydrogenase species: Azotobacter vinelandii [TaxId: 354]
Probab=99.93 E-value=5.9e-26 Score=190.54 Aligned_cols=119 Identities=28% Similarity=0.413 Sum_probs=109.3
Q ss_pred CCCccEEEecCCceEEeeCCHHHHHhcCCCeEEEEeeccCcccccccCCCcEEEEEEEECCCCeEEEEEEECCChhHHHH
Q 008860 413 YSAVPSAVFSQPPIGQVGLSEEQAIQEYGDIDVFTANFRPLKATLSGLPDRIFMKLVLCAKTNKVLGLHMCGEDAPEIVQ 492 (551)
Q Consensus 413 ~~~~~~~~~~~~~~~~vGl~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~~~~~~ilG~~~~g~~~~e~i~ 492 (551)
|+.+|+++|++|++++||+||++|++++.++.+...++..+.+++..+...||+||++|++||+|||+|++|++|+|+|+
T Consensus 1 Y~~vP~~vft~PeiA~VGlte~~a~~~g~~~~~~~~~~~~~~ra~~~~~~~G~vKlv~d~~t~~ILGa~ivg~~A~elI~ 80 (124)
T d3lada3 1 YDLIPAVIYTHPEIAGVGKTEQALKAEGVAINVGVFPFAASGRAMAANDTAGFVKVIADAKTDRVLGVHVIGPSAAELVQ 80 (124)
T ss_dssp TTCCCEEECSSSEEEEEECCHHHHHHTTCCEEEEEEEGGGCHHHHHHTCCCCEEEEEEETTTCBEEEEEEEETTHHHHHH
T ss_pred CCcCCeEecCcCceeEeehhHHHHhhcccccEEEEEECccCcchhhcCCCCeEEEEEEECCCCEEEEEEEEcccHHHHHH
Confidence 67899999999999999999999999998999999999999998888889999999999999999999999999999999
Q ss_pred HHHHHHHCCCCHHHHccCcccCCCchHHHHHHHhhhhhhcCC
Q 008860 493 GFAVAVKAGLTKADFDATVGVHPTAAEEFVTLRTPTRKIRKS 534 (551)
Q Consensus 493 ~~~~~i~~~~~~~~l~~~~~~~pt~~e~~~~~~~~~~~~~~~ 534 (551)
.++++|++|+|++||.+++++|||++|++.+ +++.+...
T Consensus 81 ~~~~ai~~~~t~~~l~~~i~~hPT~sE~l~~---Aa~~~~~~ 119 (124)
T d3lada3 81 QGAIAMEFGTSAEDLGMMVFAHPALSEALHE---AALAVSGH 119 (124)
T ss_dssp HHHHHHHHTCBHHHHHTSCCCSSCSHHHHHH---HHHHHTTC
T ss_pred HHHHHHHcCCCHHHHHhCCccCCCHHHHHHH---HHHHhcCC
Confidence 9999999999999999999999999999765 44444433
|
| >d1dxla3 d.87.1.1 (A:348-470) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CO dehydrogenase flavoprotein C-domain-like superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain domain: Dihydrolipoamide dehydrogenase species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=99.93 E-value=7.7e-26 Score=189.35 Aligned_cols=113 Identities=24% Similarity=0.351 Sum_probs=107.1
Q ss_pred CCCccEEEecCCceEEeeCCHHHHHhcCCCeEEEEeeccCcccccccCCCcEEEEEEEECCCCeEEEEEEECCChhHHHH
Q 008860 413 YSAVPSAVFSQPPIGQVGLSEEQAIQEYGDIDVFTANFRPLKATLSGLPDRIFMKLVLCAKTNKVLGLHMCGEDAPEIVQ 492 (551)
Q Consensus 413 ~~~~~~~~~~~~~~~~vGl~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~~~~~~ilG~~~~g~~~~e~i~ 492 (551)
|+.+|+++|++|++++||+||++|++.+.++.+...++..+.+++..+.+.||+|+++|+++|+|||+|++|++|+|+|+
T Consensus 1 Y~~iP~~vft~PeiA~vGlte~~A~~~g~~~~~~~~~~~~~~ra~~~~~~~G~~Klv~d~~~~~ilG~~ivG~~A~elI~ 80 (123)
T d1dxla3 1 YDKVPGVVYTNPEVASVGKTEEQVKETGVEYRVGKFPFMANSRAKAIDNAEGLVKIIAEKETDKILGVHIMAPNAGELIH 80 (123)
T ss_dssp TTSCCEEECSSSEEEEEECCHHHHHHTTCCEEEEEEEGGGCHHHHHHSCCCCEEEEEEETTTCBEEEEEEEETTHHHHHH
T ss_pred CCCCCEEeecCCceEEEECCHHHHHHcCCCEEEEEEeccccchhhhcCCCcceEEEEEECCCCEEEEEEEehhhHHHHHH
Confidence 67899999999999999999999999988999999999999999888899999999999999999999999999999999
Q ss_pred HHHHHHHCCCCHHHHccCcccCCCchHHHHHHH
Q 008860 493 GFAVAVKAGLTKADFDATVGVHPTAAEEFVTLR 525 (551)
Q Consensus 493 ~~~~~i~~~~~~~~l~~~~~~~pt~~e~~~~~~ 525 (551)
.+++||++|+|++||.+++++|||++|.+.+..
T Consensus 81 ~~~~ai~~~~t~~~l~~~i~~hPT~sE~~~~aa 113 (123)
T d1dxla3 81 EAAIALQYDASSEDIARVCHAHPTMSEAIKEAA 113 (123)
T ss_dssp HHHHHHHTTCBHHHHHTSCCCSSCTTHHHHHHH
T ss_pred HHHHHHHcCCcHHHHhhCCCCCCCHHHHHHHHH
Confidence 999999999999999999999999999977643
|
| >d1ebda3 d.87.1.1 (A:347-461) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CO dehydrogenase flavoprotein C-domain-like superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain domain: Dihydrolipoamide dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=99.93 E-value=9.1e-26 Score=186.54 Aligned_cols=112 Identities=28% Similarity=0.400 Sum_probs=106.1
Q ss_pred ccEEEecCCceEEeeCCHHHHHhcCCCeEEEEeeccCcccccccCCCcEEEEEEEECCCCeEEEEEEECCChhHHHHHHH
Q 008860 416 VPSAVFSQPPIGQVGLSEEQAIQEYGDIDVFTANFRPLKATLSGLPDRIFMKLVLCAKTNKVLGLHMCGEDAPEIVQGFA 495 (551)
Q Consensus 416 ~~~~~~~~~~~~~vGl~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~~~~~~ilG~~~~g~~~~e~i~~~~ 495 (551)
+|+++|++|++++||+||+||++++.++.+...++..+.+++..+++.||+|+++|+++|+|||++++|++|+|+|+.++
T Consensus 2 vP~~vft~PeiA~VGlte~ea~~~g~~~~v~~~~~~~~~ra~~~~~~~G~vKli~~~~~~~iLG~~ivg~~A~elI~~~~ 81 (115)
T d1ebda3 2 IPAVVFSDPECASVGYFEQQAKDEGIDVIAAKFPFAANGRALALNDTDGFLKLVVRKEDGVIIGAQIIGPNASDMIAELG 81 (115)
T ss_dssp CCEEECSSSCEEEEECCHHHHHTTTCCEEEEEEEGGGCHHHHHHTCCCCEEEEEEETTTTEEEEEEEESTTHHHHHHHHH
T ss_pred cCeEecCCCceEEEeCCHHHHhhhhhhhhccceecccceeeeecCCCcEEEEEEEeCCcceEEEEEEEcCCHHHHHHHHH
Confidence 79999999999999999999999988999999999999998888889999999999999999999999999999999999
Q ss_pred HHHHCCCCHHHHccCcccCCCchHHHHHHHhh
Q 008860 496 VAVKAGLTKADFDATVGVHPTAAEEFVTLRTP 527 (551)
Q Consensus 496 ~~i~~~~~~~~l~~~~~~~pt~~e~~~~~~~~ 527 (551)
++|++|+|++||.+++++|||++|++.+..+.
T Consensus 82 ~ai~~~~t~~~l~~~i~~hPT~sE~~~~Aa~~ 113 (115)
T d1ebda3 82 LAIEAGMTAEDIALTIHAHPTLGEIAMEAAEV 113 (115)
T ss_dssp HHHHHTCBHHHHHHSCCCTTSSTHHHHHHHHH
T ss_pred HHHHcCCCHHHHhhCCCCCCCHHHHHHHHHHH
Confidence 99999999999999999999999998875543
|
| >d1xdia2 d.87.1.1 (A:349-466) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CO dehydrogenase flavoprotein C-domain-like superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain domain: Dihydrolipoamide dehydrogenase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.93 E-value=1e-25 Score=186.93 Aligned_cols=110 Identities=21% Similarity=0.247 Sum_probs=104.8
Q ss_pred CCccEEEecCCceEEeeCCHHHHHhcCCCeEEEEeeccCcccccccCCCcEEEEEEEECCCCeEEEEEEECCChhHHHHH
Q 008860 414 SAVPSAVFSQPPIGQVGLSEEQAIQEYGDIDVFTANFRPLKATLSGLPDRIFMKLVLCAKTNKVLGLHMCGEDAPEIVQG 493 (551)
Q Consensus 414 ~~~~~~~~~~~~~~~vGl~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~~~~~~ilG~~~~g~~~~e~i~~ 493 (551)
+.+|+++|++|++++||+||++|++.+.++.+...++..+.+++..+.+.||+|+++|+++|+|||+|++|++|+|+|+.
T Consensus 2 r~iP~~vft~PeiA~vGlte~~a~~~g~~~~~~~~~~~~~~ra~~~~~~~G~vKlv~d~~~~~ilGa~ivG~~A~elI~~ 81 (118)
T d1xdia2 2 RTVAATVFTRPEIAAVGVPQSVIDAGSVAARTIMLPLRTNARAKMSEMRHGFVKIFCRRSTGVVIGGVVVAPIASELILP 81 (118)
T ss_dssp GGCEEEECSSSEEEEEESCHHHHHHTSSCEEEEEEESTTSHHHHHTTCSSCEEEEEEETTTCBEEEEEEEETTHHHHHHH
T ss_pred CCCCEEecCCChheeehhhHHHHHhCcccceeeeecccchhhhhhcccchhheEEEEecCCCceEEEEEEcCcHHHHHHH
Confidence 46899999999999999999999999889999999999999988888899999999999999999999999999999999
Q ss_pred HHHHHHCCCCHHHHccCcccCCCchHHHHH
Q 008860 494 FAVAVKAGLTKADFDATVGVHPTAAEEFVT 523 (551)
Q Consensus 494 ~~~~i~~~~~~~~l~~~~~~~pt~~e~~~~ 523 (551)
++++|++|+|++||.+++++|||++|.+.+
T Consensus 82 ~~~ai~~~~t~~~l~~~i~~hPT~sE~l~~ 111 (118)
T d1xdia2 82 IAVAVQNRITVNELAQTLAVYPSLSGSITE 111 (118)
T ss_dssp HHHHHHHTCBHHHHHTSBCCSSSTHHHHHH
T ss_pred HHHHHHcCCCHHHHhhCCCCCCCHHHHHHH
Confidence 999999999999999999999999999665
|
| >d1lvla3 d.87.1.1 (A:336-458) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CO dehydrogenase flavoprotein C-domain-like superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain domain: Dihydrolipoamide dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=99.93 E-value=1.5e-25 Score=187.47 Aligned_cols=110 Identities=25% Similarity=0.325 Sum_probs=105.1
Q ss_pred CCccEEEecCCceEEeeCCHHHHHhcCCCeEEEEeeccCcccccccCCCcEEEEEEEECCCCeEEEEEEECCChhHHHHH
Q 008860 414 SAVPSAVFSQPPIGQVGLSEEQAIQEYGDIDVFTANFRPLKATLSGLPDRIFMKLVLCAKTNKVLGLHMCGEDAPEIVQG 493 (551)
Q Consensus 414 ~~~~~~~~~~~~~~~vGl~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~~~~~~ilG~~~~g~~~~e~i~~ 493 (551)
..+|+++|++|++++||+||+||++++.++.+...++..+.+++..+++.||+|+++|++||+|||++++|++|+|+|+.
T Consensus 2 ~~iP~vvft~PeiA~VGlte~eA~~~g~~~~v~~~~~~~~~ra~~~~~~~g~vklv~d~~t~~ILG~~ivG~~A~elI~~ 81 (123)
T d1lvla3 2 AAIAAVCFTDPEVVVVGKTPEQASQQGLDCIVAQFPFAANGRAMSLESKSGFVRVVARRDNHLILGWQAVGVAVSELSTA 81 (123)
T ss_dssp SCCCEEECSSSEEEEEECCHHHHHHTTCCEEEEEEEGGGCHHHHHTTCCCCEEEEEEETTTCBEEEEEEEETTGGGHHHH
T ss_pred CCCCEEEeCCCccEEEECCHHHHhhcchhhhcceeeccccccceecCcchhheeeeeecccccceEEEEEeCchhhHHHH
Confidence 46899999999999999999999999989999999999999998888999999999999999999999999999999999
Q ss_pred HHHHHHCCCCHHHHccCcccCCCchHHHHH
Q 008860 494 FAVAVKAGLTKADFDATVGVHPTAAEEFVT 523 (551)
Q Consensus 494 ~~~~i~~~~~~~~l~~~~~~~pt~~e~~~~ 523 (551)
++++|++|+|++||.+++++|||++|++.+
T Consensus 82 ~~lai~~~~t~~~l~~~i~~hPT~sE~~~~ 111 (123)
T d1lvla3 82 FAQSLEMGACLEDVAGTIHAHPTLGEAVQE 111 (123)
T ss_dssp HHHHHHHTCBHHHHHTSCCCTTCTTHHHHH
T ss_pred HHHHHHcCCCHHHHhcCCCCCCCHHHHHHH
Confidence 999999999999999999999999999764
|
| >d1gesa3 d.87.1.1 (A:336-450) Glutathione reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CO dehydrogenase flavoprotein C-domain-like superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Probab=99.93 E-value=5.8e-26 Score=187.74 Aligned_cols=112 Identities=48% Similarity=0.809 Sum_probs=104.1
Q ss_pred CCCccEEEecCCceEEeeCCHHHHHhcCC--CeEEEEeeccCcccccccCCCcEEEEEEEECCCCeEEEEEEECCChhHH
Q 008860 413 YSAVPSAVFSQPPIGQVGLSEEQAIQEYG--DIDVFTANFRPLKATLSGLPDRIFMKLVLCAKTNKVLGLHMCGEDAPEI 490 (551)
Q Consensus 413 ~~~~~~~~~~~~~~~~vGl~~~~a~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~~~~~~ilG~~~~g~~~~e~ 490 (551)
|..+|+++|++|++++||+||+||++++. ++.+...++..+.++...+.+.||+|+++|+++++|||+|++|++|+|+
T Consensus 1 Y~~vP~~vft~PeiA~VGlte~eA~~~~~~~~v~~~~~~~~~~~~a~~~~~~~g~~k~v~~~~~~~IlGa~ivG~~A~El 80 (115)
T d1gesa3 1 YSNIPTVVFSHPPIGTVGLTEPQAREQYGDDQVKVYKSSFTAMYTAVTTHRQPCRMKLVCVGSEEKIVGIHGIGFGMDEM 80 (115)
T ss_dssp CSSCCEEECCSSCEEEEECCHHHHHHHHCGGGEEEEEEEEECHHHHTSSSCCEEEEEEEEETTTTEEEEEEEESTTHHHH
T ss_pred CCCCCeEecCCCccEEEeCCHHHHHHHcCCcccceeeeecccccccceeccccceEEEEEecCCcEEEEEEEECCCHHHH
Confidence 56899999999999999999999999854 5777788888888888888899999999999999999999999999999
Q ss_pred HHHHHHHHHCCCCHHHHccCcccCCCchHHHHHH
Q 008860 491 VQGFAVAVKAGLTKADFDATVGVHPTAAEEFVTL 524 (551)
Q Consensus 491 i~~~~~~i~~~~~~~~l~~~~~~~pt~~e~~~~~ 524 (551)
|+.++++|++|+|++||.+++++|||++|+|.+|
T Consensus 81 I~~~~~ai~~~~t~~~l~~~i~~hPT~sE~l~~m 114 (115)
T d1gesa3 81 LQGFAVALKMGATKKDFDNTVAIHPTAAEEFVTM 114 (115)
T ss_dssp HHHHHHHHHTTCBHHHHHTSCCCSSCSGGGGGSC
T ss_pred HHHHHHHHHcCCcHHHHhcCcccCCcHHHHHHhc
Confidence 9999999999999999999999999999997754
|
| >d1ojta3 d.87.1.1 (A:471-598) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CO dehydrogenase flavoprotein C-domain-like superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain domain: Dihydrolipoamide dehydrogenase species: Neisseria meningitidis [TaxId: 487]
Probab=99.93 E-value=2.2e-25 Score=187.62 Aligned_cols=114 Identities=21% Similarity=0.340 Sum_probs=107.0
Q ss_pred CCccEEEecCCceEEeeCCHHHHHhcCCCeEEEEeeccCcccccccCCCcEEEEEEEECCCCeEEEEEEECCChhHHHHH
Q 008860 414 SAVPSAVFSQPPIGQVGLSEEQAIQEYGDIDVFTANFRPLKATLSGLPDRIFMKLVLCAKTNKVLGLHMCGEDAPEIVQG 493 (551)
Q Consensus 414 ~~~~~~~~~~~~~~~vGl~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~~~~~~ilG~~~~g~~~~e~i~~ 493 (551)
+.+|+++|++|++++||+||++|++++.++.+...++....+++..+.+.||+|+++|++||+|||+|++|++|+|+|+.
T Consensus 2 r~IP~~vft~PeiA~VGlte~~A~~~g~~~~v~~~~~~~~~ra~~~~~~~g~~Kli~d~~~g~iLGa~ivG~~A~ElI~~ 81 (128)
T d1ojta3 2 RVIPGVAYTSPEVAWVGETELSAKASARKITKANFPWAASGRAIANGCDKPFTKLIFDAETGRIIGGGIVGPNGGDMIGE 81 (128)
T ss_dssp CCCCEEECSSSCEEEEECCHHHHHHHTCCEEEEEEEGGGCHHHHHTTCCSCEEEEEEETTTCBEEEEEEESTTHHHHHHH
T ss_pred CcCCEeecCCCceeeeeccHHHHHHcCCCcccceeeccchhhHHhcCCccceEEEEEeCCCCeEEEEEEEhhhHHHHHHH
Confidence 46899999999999999999999999989999999999999998888999999999999999999999999999999999
Q ss_pred HHHHHHCCCCHHHHccCcccCCCchHHHHHHHhh
Q 008860 494 FAVAVKAGLTKADFDATVGVHPTAAEEFVTLRTP 527 (551)
Q Consensus 494 ~~~~i~~~~~~~~l~~~~~~~pt~~e~~~~~~~~ 527 (551)
+++||++|+|++||.+++++|||++|.+.+....
T Consensus 82 ~~lai~~~~t~~~l~~~i~~hPT~sE~l~~Aa~~ 115 (128)
T d1ojta3 82 VCLAIEMGCDAADIGKTIHPHPTLGESIGMAAEV 115 (128)
T ss_dssp HHHHHHTTCBHHHHHTSCCCSSSSTTHHHHHHHH
T ss_pred HHHHHHcCCCHHHHhhCcCcCCCHHHHHHHHHHH
Confidence 9999999999999999999999999997764443
|
| >d1onfa3 d.87.1.1 (A:377-495) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CO dehydrogenase flavoprotein C-domain-like superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain domain: Glutathione reductase species: Plasmodium falciparum [TaxId: 5833]
Probab=99.92 E-value=1.2e-24 Score=181.29 Aligned_cols=112 Identities=50% Similarity=0.851 Sum_probs=98.4
Q ss_pred CCCccEEEecCCceEEeeCCHHHHHhcCC--CeEEEEeeccCcccc----cccCCCcEEEEEEEECCCCeEEEEEEECCC
Q 008860 413 YSAVPSAVFSQPPIGQVGLSEEQAIQEYG--DIDVFTANFRPLKAT----LSGLPDRIFMKLVLCAKTNKVLGLHMCGED 486 (551)
Q Consensus 413 ~~~~~~~~~~~~~~~~vGl~~~~a~~~~~--~~~~~~~~~~~~~~~----~~~~~~~~~~kl~~~~~~~~ilG~~~~g~~ 486 (551)
|+.+|+++|++|++++||+||+||++++. ++.++...+....++ ......+||+|+++++++++|||+|++|++
T Consensus 1 Y~~vP~~vfT~PeiA~VGlte~~A~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~g~~kli~~~~~~~IlGa~ivG~~ 80 (119)
T d1onfa3 1 YKLIPTVIFSHPPIGTIGLSEEAAIQIYGKENVKIYESKFTNLFFSVYDIEPELKEKTYLKLVCVGKDELIKGLHIIGLN 80 (119)
T ss_dssp CSSCCEEECCSSCEEEEECCHHHHHHHTCGGGEEEEEEEECCGGGTTSCSCGGGSCCEEEEEEEETTTTEEEEEEEESTT
T ss_pred CCcCCeEeccCCccEEEECCHHHHHHhcccccccccccccCccccchhhhhhccCCCceEEEEEecCCCcEEEEEEeCCC
Confidence 67899999999999999999999999864 566666665554433 334466799999999999999999999999
Q ss_pred hhHHHHHHHHHHHCCCCHHHHccCcccCCCchHHHHHH
Q 008860 487 APEIVQGFAVAVKAGLTKADFDATVGVHPTAAEEFVTL 524 (551)
Q Consensus 487 ~~e~i~~~~~~i~~~~~~~~l~~~~~~~pt~~e~~~~~ 524 (551)
|+|+|+.+++||++|+|++||.+++++|||++|+|..|
T Consensus 81 A~ElI~~~~~ai~~~~t~~~l~~~i~~hPT~sE~~~~~ 118 (119)
T d1onfa3 81 ADEIVQGFAVALKMNATKKDFDETIPIHPTAAEEFLTL 118 (119)
T ss_dssp HHHHHHHHHHHHHTTCBHHHHHTSCCCTTCSTTHHHHC
T ss_pred HHHHHHHHHHHHHcCCcHHHHhhCcccCCCHHHHHHhC
Confidence 99999999999999999999999999999999998865
|
| >d1mo9a3 d.87.1.1 (A:384-523) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CO dehydrogenase flavoprotein C-domain-like superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase species: Xanthobacter sp., py2 [TaxId: 35809]
Probab=99.89 E-value=4.7e-23 Score=176.82 Aligned_cols=118 Identities=25% Similarity=0.283 Sum_probs=101.9
Q ss_pred CCccEEEecCCceEEeeCCHHHHHhcCCCeEEEEeeccCcc----------------cccccCCCcEEEEEEEECCCCeE
Q 008860 414 SAVPSAVFSQPPIGQVGLSEEQAIQEYGDIDVFTANFRPLK----------------ATLSGLPDRIFMKLVLCAKTNKV 477 (551)
Q Consensus 414 ~~~~~~~~~~~~~~~vGl~~~~a~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~kl~~~~~~~~i 477 (551)
..+|+++|++|++++||+||+||++++.++.+...++.... ++...+.+.||+|+++|+++|+|
T Consensus 2 ~~iP~vvfT~PeiA~VGlTe~eA~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~vKlv~d~~t~~I 81 (140)
T d1mo9a3 2 KNYPDFLHTHYEVSFLGMGEEEARAAGHEIVTIKMPPDTENGLNVALPASDRTMLYAFGKGTAHMSGFQKIVIDAKTRKV 81 (140)
T ss_dssp CSCCEEEESSSEEEEEECCHHHHHHTTCCEEEEEESCCSTTTTCSSCSCCTTTHHHHHSTTTGGGGCEEEEEEETTTCBE
T ss_pred CCCCcEeccCCccEEEECCHHHHHHcCCCeEEEEEeecccccceeeeeeccchhhhhhhhhcCCCCceEEEEEecCCCcE
Confidence 46899999999999999999999999988888876533211 12234567899999999999999
Q ss_pred EEEEEECCChhHHHHHHHHHHHCCCCHHHHccC--cccCCCchHHHHHHHhhhhhh
Q 008860 478 LGLHMCGEDAPEIVQGFAVAVKAGLTKADFDAT--VGVHPTAAEEFVTLRTPTRKI 531 (551)
Q Consensus 478 lG~~~~g~~~~e~i~~~~~~i~~~~~~~~l~~~--~~~~pt~~e~~~~~~~~~~~~ 531 (551)
||+|++|++|.|+|+.++++|++++|++||.++ +++|||.+|.+..|....+.+
T Consensus 82 lGa~ivG~~A~ElI~~~~~ai~~~~t~~dl~~~~~i~~hPT~~~~l~~l~a~~~~~ 137 (140)
T d1mo9a3 82 LGAHHVGYGAKDAFQYLNVLIKQGLTVDELGDMDELFLNPTHFIQLSRLRAGSKNL 137 (140)
T ss_dssp EEEEEEESSCHHHHHHHHHHHHTTCBHHHHHTSCCCSSCSCCHHHHHHHHTTCSSC
T ss_pred EEEEEECCCHHHHHHHHHHHHHcCCCHHHHHhcCCCCCCCChHHHHHHHhcCcccc
Confidence 999999999999999999999999999999986 889999999988887766654
|
| >d1h6va3 d.87.1.1 (A:367-499) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CO dehydrogenase flavoprotein C-domain-like superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain domain: Mammalian thioredoxin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.89 E-value=2.1e-23 Score=176.80 Aligned_cols=117 Identities=40% Similarity=0.742 Sum_probs=98.2
Q ss_pred CCCccEEEecCCceEEeeCCHHHHHhcCC--CeEEEEeeccCccccccc-CCCcEEEEEEEE-CCCCeEEEEEEECCChh
Q 008860 413 YSAVPSAVFSQPPIGQVGLSEEQAIQEYG--DIDVFTANFRPLKATLSG-LPDRIFMKLVLC-AKTNKVLGLHMCGEDAP 488 (551)
Q Consensus 413 ~~~~~~~~~~~~~~~~vGl~~~~a~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~kl~~~-~~~~~ilG~~~~g~~~~ 488 (551)
|..+|+++|++|++++||+||+||++++. ++.++...+.++.+.... ....++.+++++ +++++|||+|++|++|+
T Consensus 1 Y~~VP~~vfT~PeiA~VGlte~eA~~~g~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ILGa~ivg~~A~ 80 (133)
T d1h6va3 1 YDNVPTTVFTPLEYGCCGLSEEKAVEKFGEENIEVYHSFFWPLEWTVPSRDNNKCYAKVICNLKDNERVVGFHVLGPNAG 80 (133)
T ss_dssp CSSCCEEECSSSCEEEEECCHHHHHHHHCGGGEEEEEEEECCHHHHTTTCCTTCEEEEEEEEGGGTTEEEEEEEESTTHH
T ss_pred CCCCCEEecCcchheeEeCCHHHHHHhccccccchheeccchhhhhhhhhcccccceEEEEEecCcccEEEEEEeCCCHH
Confidence 67899999999999999999999999864 566677777776666443 344566666666 57999999999999999
Q ss_pred HHHHHHHHHHHCCCCHHHHccCcccCCCchHHHHHHHhhhh
Q 008860 489 EIVQGFAVAVKAGLTKADFDATVGVHPTAAEEFVTLRTPTR 529 (551)
Q Consensus 489 e~i~~~~~~i~~~~~~~~l~~~~~~~pt~~e~~~~~~~~~~ 529 (551)
|+|+.++++|++|+|++||.+++++|||++|++..|....|
T Consensus 81 ElI~~~~~ai~~~~t~~~l~~~i~~hPT~sE~~~~l~~~~~ 121 (133)
T d1h6va3 81 EVTQGFAAALKCGLTKQQLDSTIGIHPVCAEIFTTLSVTKR 121 (133)
T ss_dssp HHHHHHHHHHHTTCBHHHHHHSCCCTTCGGGGGGGCCCBGG
T ss_pred HHHHHHHHHHHcCCCHHHHhhccccCCCHHHHHHHhhhhhh
Confidence 99999999999999999999999999999999865554444
|
| >d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Probab=99.87 E-value=1.1e-21 Score=162.86 Aligned_cols=116 Identities=40% Similarity=0.737 Sum_probs=110.9
Q ss_pred CCCCCCceecchhhhcCCCCCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCCCCCHHHHHHHHHHHHhcCcEEE
Q 008860 225 DIPGSEYAIDSDAALDLPSKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRDFVAEQMSLRGIEFH 304 (551)
Q Consensus 225 ~i~g~~~~~~~~~~~~~~~~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~ 304 (551)
++||.++++++++++++++.|++++|||+|++|+|+|..|+++|.+||++++.+++++.+++++++.+.+.|+++||+++
T Consensus 1 diPG~e~~~t~~~~~~l~~~p~~vvIiGgG~ig~E~A~~l~~~G~~Vtlve~~~~~l~~~d~~~~~~~~~~l~~~GV~~~ 80 (116)
T d1gesa2 1 DIPGVEYGIDSDGFFALPALPERVAVVGAGYIGVELGGVINGLGAKTHLFEMFDAPLPSFDPMISETLVEVMNAEGPQLH 80 (116)
T ss_dssp CSTTGGGSBCHHHHHHCSSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHHSCEEE
T ss_pred CcCCccccCCHHHHhChhhCCCEEEEECCChhhHHHHHHhhccccEEEEEeecchhhhhcchhhHHHHHHHHHHCCCEEE
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecC
Q 008860 305 TEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATG 340 (551)
Q Consensus 305 ~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G 340 (551)
+++.|+++..++++.+.+.+++|+++++|.||+|+|
T Consensus 81 ~~~~v~~i~~~~~~~~~v~~~~g~~~~~D~vi~a~G 116 (116)
T d1gesa2 81 TNAIPKAVVKNTDGSLTLELEDGRSETVDCLIWAIG 116 (116)
T ss_dssp CSCCEEEEEECTTSCEEEEETTSCEEEESEEEECSC
T ss_pred eCCEEEEEEEcCCcEEEEEECCCCEEEcCEEEEecC
Confidence 999999999887766789999999999999999998
|
| >d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Plasmodium falciparum [TaxId: 5833]
Probab=99.86 E-value=2.7e-21 Score=160.41 Aligned_cols=116 Identities=31% Similarity=0.553 Sum_probs=109.3
Q ss_pred CCCCCCCCceecchhhhcCCCCCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCCCCCHHHHHHHHHHHHhcCcE
Q 008860 223 IPDIPGSEYAIDSDAALDLPSKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRDFVAEQMSLRGIE 302 (551)
Q Consensus 223 ~p~i~g~~~~~~~~~~~~~~~~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~ 302 (551)
+|++||.++++++++++.+++ |++++|||+|++|+|+|..|+++|.+||++++.+++++.+|+++++.+++.|+++||+
T Consensus 1 ~P~IpG~e~~~ts~~~~~l~~-p~~v~IiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~il~~~d~~~~~~~~~~l~~~gV~ 79 (117)
T d1onfa2 1 FPPVKGIENTISSDEFFNIKE-SKKIGIVGSGYIAVELINVIKRLGIDSYIFARGNRILRKFDESVINVLENDMKKNNIN 79 (117)
T ss_dssp CCSCTTGGGCEEHHHHTTCCC-CSEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSSSCTTSCHHHHHHHHHHHHHTTCE
T ss_pred CcccCCHhHcCchhHHhccCC-CCEEEEECCchHHHHHHHHHHhccccceeeehhccccccccHHHHHHHHHHHHhCCCE
Confidence 589999999999999999987 9999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCcccEEEEEcCCceEEEEECCCeEEE-eeEEEEec
Q 008860 303 FHTEESPQAILKSTDGSLSVKTNKGTVDG-FSHVMFAT 339 (551)
Q Consensus 303 i~~~~~v~~i~~~~~~~~~V~~~~G~~i~-~d~vi~a~ 339 (551)
++++++|++++..+++.+.+++.+|++++ +|.|++|+
T Consensus 80 i~~~~~v~~i~~~~~~~~~v~~~~G~~~~~~D~Vi~AI 117 (117)
T d1onfa2 80 IVTFADVVEIKKVSDKNLSIHLSDGRIYEHFDHVIYCV 117 (117)
T ss_dssp EECSCCEEEEEESSTTCEEEEETTSCEEEEESEEEECC
T ss_pred EEECCEEEEEEEcCCCeEEEEECCCCEEEeCCEEEEeC
Confidence 99999999999877766889999998875 79999985
|
| >d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Probab=99.84 E-value=1.4e-21 Score=177.06 Aligned_cols=156 Identities=20% Similarity=0.307 Sum_probs=121.7
Q ss_pred CCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCCCCC-HHHHHHHH----------HHHHhcCcEEEcCcccEEEE
Q 008860 245 PEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFD-EDIRDFVA----------EQMSLRGIEFHTEESPQAIL 313 (551)
Q Consensus 245 ~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~~~~-~~~~~~l~----------~~l~~~Gv~i~~~~~v~~i~ 313 (551)
..+|+|||+|++|+|+|..|+++|.+++++.+.+..++.++ +.+...+. +.....+++++.+++++++.
T Consensus 3 ~a~VvIIGgG~~G~e~A~~l~~~g~~v~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~i~ 82 (183)
T d1d7ya1 3 KAPVVVLGAGLASVSFVAELRQAGYQGLITVVGDEAERPYDRPPLSKDFMAHGDAEKIRLDCKRAPEVEWLLGVTAQSFD 82 (183)
T ss_dssp CSSEEEECCSHHHHHHHHHHHHHTCCSCEEEEESSCSCCBCSGGGGTTHHHHCCGGGSBCCGGGSTTCEEEETCCEEEEE
T ss_pred CCCEEEECccHHHHHHHHHHHhcCCceEEEEEecccccchhhHHHhhhhhhhhhhhhHHHHHhhcCCeEEEEeccccccc
Confidence 35699999999999999999999988887777665554322 22222222 22345699999999999997
Q ss_pred EcCCceEEEEECCCeEEEeeEEEEecCcCCCCCCCC---ccccCeeecCCCCeEeCCCCCCCCCcEEEeCcCCCC-----
Q 008860 314 KSTDGSLSVKTNKGTVDGFSHVMFATGRRPNTKNLG---LEKVGVKMTKNGAIEVDEYSGTAVPSIWAVGDVTDR----- 385 (551)
Q Consensus 314 ~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~~~~l~---l~~~gl~~~~~G~i~vd~~~~t~~~~vya~GD~~~~----- 385 (551)
.+.. .+.+.+|+++++|.+++|+|..|++.+++ ....++.. +++|.||+++||+.|+|||+|||+..
T Consensus 83 ~~~~---~~~~~~g~~~~~D~vi~a~G~~p~~~~~~~~~~~~~gl~~--~~~I~vd~~~~ts~~~IyA~GD~a~~~~~~~ 157 (183)
T d1d7ya1 83 PQAH---TVALSDGRTLPYGTLVLATGAAPRAVLANDALARAAGLAC--DDGIFVDAYGRTTCPDVYALGDVTRQRNPLS 157 (183)
T ss_dssp TTTT---EEEETTSCEEECSEEEECCCEEECCEEECCHHHHHTTCCB--SSSEECCTTCBCSSTTEEECGGGEEEECTTT
T ss_pred cccc---eeEecCCcEeeeeeEEEEEEEEcccccccccccceeeEee--CCcEEeccceeccccccchhhhhhccceeeC
Confidence 6553 47889999999999999999999876543 23445554 35799999999999999999999863
Q ss_pred -----CCChHHHHHhHHHHHHHHcC
Q 008860 386 -----INLTPVALMEGGALAKTLFQ 405 (551)
Q Consensus 386 -----~~~~~~A~~~g~~aa~~i~g 405 (551)
.+++..|.+||+++|+||+.
T Consensus 158 g~~~~~~~~~~A~~qg~~aa~nil~ 182 (183)
T d1d7ya1 158 GRFERIETWSNAQNQGIAVARHLVD 182 (183)
T ss_dssp CSEEECCCHHHHHHHHHHHHHHHHC
T ss_pred CceechhHHHHHHHHHHHHHHHHcC
Confidence 25788999999999999974
|
| >d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Neisseria meningitidis [TaxId: 487]
Probab=99.84 E-value=1.1e-20 Score=158.41 Aligned_cols=120 Identities=29% Similarity=0.426 Sum_probs=110.2
Q ss_pred CCCCCCCCCCceecchhhhcCCCCCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCCCCCHHHHHHHHHHHHhcC
Q 008860 221 PFIPDIPGSEYAIDSDAALDLPSKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRDFVAEQMSLRG 300 (551)
Q Consensus 221 p~~p~i~g~~~~~~~~~~~~~~~~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~G 300 (551)
|++|.+|+.++++++++++++.+.|++++|||+|++|+|+|..|+++|.+||++++++++++.+|+++.+.+++.|+++|
T Consensus 2 ~~lP~ip~~~~i~ts~~~l~l~~~p~~vvIiGgG~IG~E~A~~~~~~G~~Vtive~~~~il~~~d~~~~~~l~~~l~~~g 81 (125)
T d1ojta2 2 TKLPFIPEDPRIIDSSGALALKEVPGKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDGLMQGADRDLVKVWQKQNEYRF 81 (125)
T ss_dssp CCCSSCCCCTTEECHHHHTTCCCCCSEEEEESCSHHHHHHHHHHHHHTCEEEEECSSSSSSTTSCHHHHHHHHHHHGGGE
T ss_pred CCCCCCCCCCcEEcHHHhhCccccCCeEEEECCCHHHHHHHHHhhcCCCEEEEEEeeccccccchhhHHHHHHHHHHHcC
Confidence 57788888888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEcCcccEEEEEcCCceEEEEEC--CC--eEEEeeEEEEecCc
Q 008860 301 IEFHTEESPQAILKSTDGSLSVKTN--KG--TVDGFSHVMFATGR 341 (551)
Q Consensus 301 v~i~~~~~v~~i~~~~~~~~~V~~~--~G--~~i~~d~vi~a~G~ 341 (551)
|++++++++++++.++++ +.+.+. +| +++++|.|++|+|+
T Consensus 82 v~~~~~~~v~~v~~~~~g-~~v~~~~~~g~~~~i~~D~vl~A~GR 125 (125)
T d1ojta2 82 DNIMVNTKTVAVEPKEDG-VYVTFEGANAPKEPQRYDAVLVAAGR 125 (125)
T ss_dssp EEEECSCEEEEEEEETTE-EEEEEESSSCCSSCEEESCEEECCCE
T ss_pred cccccCcEEEEEEEcCCc-EEEEEEeCCCCeEEEEcCEEEEecCC
Confidence 999999999999988777 555553 33 36999999999996
|
| >d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Crithidia fasciculata [TaxId: 5656]
Probab=99.83 E-value=3.1e-20 Score=154.62 Aligned_cols=114 Identities=38% Similarity=0.683 Sum_probs=105.8
Q ss_pred CCCceecchhhhcCCCCCCeEEEEcCcHHHHHHHHHHHhC---CCeEEEEeecCccCCCCCHHHHHHHHHHHHhcCcEEE
Q 008860 228 GSEYAIDSDAALDLPSKPEKIAIVGGGYIALEFAGIFSGL---TSEVHVFIRQKKVLRGFDEDIRDFVAEQMSLRGIEFH 304 (551)
Q Consensus 228 g~~~~~~~~~~~~~~~~~~~vvViG~G~~g~e~a~~l~~~---g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~ 304 (551)
|.++++++++++.+++.|++++|||+|++|+|+|..|.++ |.+|+++++.+++++.+|+++++.+++.|+++||+++
T Consensus 1 G~e~~~ts~~~~~l~~~p~~v~IiGgG~ig~E~A~~l~~~~~~g~~Vtli~~~~~il~~~d~~~~~~~~~~l~~~GI~v~ 80 (117)
T d1feca2 1 GDDLCITSNEAFYLDEAPKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMILRGFDSELRKQLTEQLRANGINVR 80 (117)
T ss_dssp TGGGCBCHHHHTTCSSCCSEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSSSSTTSCHHHHHHHHHHHHHTTEEEE
T ss_pred CcEEEEchHHhhCccccCCeEEEECCChHHHHHHHHhHhhcccccccceecccccccccccchhhHHHHHHHhhCcEEEE
Confidence 4467889999999999999999999999999999887654 8899999999999999999999999999999999999
Q ss_pred cCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCc
Q 008860 305 TEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGR 341 (551)
Q Consensus 305 ~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~ 341 (551)
+++.|++|+.++++...+.+++|++++||.|++|+|+
T Consensus 81 ~~~~v~~i~~~~~g~~~v~~~~g~~i~~D~Vi~a~GR 117 (117)
T d1feca2 81 THENPAKVTKNADGTRHVVFESGAEADYDVVMLAIGR 117 (117)
T ss_dssp ETCCEEEEEECTTSCEEEEETTSCEEEESEEEECSCE
T ss_pred cCCEEEEEEECCCCEEEEEECCCCEEEcCEEEEecCC
Confidence 9999999998777767899999999999999999996
|
| >d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Probab=99.83 E-value=1.3e-20 Score=172.70 Aligned_cols=159 Identities=24% Similarity=0.342 Sum_probs=122.2
Q ss_pred eEEEEcCcHHHHHHHHHHHhC--CCeEEEEeecCccCCCCC--------------HHHHHHHHHHHHhcCcEEEcCcccE
Q 008860 247 KIAIVGGGYIALEFAGIFSGL--TSEVHVFIRQKKVLRGFD--------------EDIRDFVAEQMSLRGIEFHTEESPQ 310 (551)
Q Consensus 247 ~vvViG~G~~g~e~a~~l~~~--g~~Vtlv~~~~~~l~~~~--------------~~~~~~l~~~l~~~Gv~i~~~~~v~ 310 (551)
+|+|||+|++|+|+|..|+++ +.+|+++++.+.+. ..+ +.+.....+.++++||+++++++|+
T Consensus 2 KVvIIGgG~~G~e~A~~l~~~~~~~~V~v~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~V~ 80 (198)
T d1nhpa1 2 KVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFIS-FLSAGMQLYLEGKVKDVNSVRYMTGEKMESRGVNVFSNTEIT 80 (198)
T ss_dssp EEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSSSSS-BCGGGHHHHHTTSSCCGGGSBSCCHHHHHHTTCEEEETEEEE
T ss_pred EEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCCccc-ccccCcchhhcccccchHHHHHhhHHHHHHCCcEEEEeecee
Confidence 699999999999999999987 45899999876531 111 1222223567889999999999999
Q ss_pred EEEEcCCceEEEE-ECCCe--EEEeeEEEEecCcCCCCCCC-----CccccCeeecCCCCeEeCCCCCCCCCcEEEeCcC
Q 008860 311 AILKSTDGSLSVK-TNKGT--VDGFSHVMFATGRRPNTKNL-----GLEKVGVKMTKNGAIEVDEYSGTAVPSIWAVGDV 382 (551)
Q Consensus 311 ~i~~~~~~~~~V~-~~~G~--~i~~d~vi~a~G~~p~~~~l-----~l~~~gl~~~~~G~i~vd~~~~t~~~~vya~GD~ 382 (551)
+++.+++. +++. ..+|+ ++++|.+|+|+|..|+.... .....++.++++|+|.||+++||+.|+|||+|||
T Consensus 81 ~i~~~~~~-v~~~~~~~g~~~~~~~D~li~a~G~~~~~~~g~~~~~~~~~~~~~~~~~G~i~vd~~~~T~~~~IyA~GD~ 159 (198)
T d1nhpa1 81 AIQPKEHQ-VTVKDLVSGEERVENYDKLIISPGAVPFELDGVRPNTAWLKGTLELHPNGLIKTDEYMRTSEPDVFAVGDA 159 (198)
T ss_dssp EEETTTTE-EEEEETTTCCEEEEECSEEEECCCEEECCCCCEEESCGGGTTTSCBCTTSCBCCCTTCBCSSTTEEECGGG
T ss_pred eEeecccc-ceeeecccccccccccceeeEeecceeecccccccccccccccceeccCCceecCCcccccccceEEecce
Confidence 99877655 5554 34554 57899999999987653210 0112367778899999999999999999999999
Q ss_pred CCC----------CCChHHHHHhHHHHHHHHcCCC
Q 008860 383 TDR----------INLTPVALMEGGALAKTLFQAE 407 (551)
Q Consensus 383 ~~~----------~~~~~~A~~~g~~aa~~i~g~~ 407 (551)
+.. ..++..|.+||+++|+||.+..
T Consensus 160 a~~~~~~~~~~~~~~~a~~A~~~g~~aa~ni~~~~ 194 (198)
T d1nhpa1 160 TLIKYNPADTEVNIALATNARKQGRFAVKNLEEPV 194 (198)
T ss_dssp SCEEEGGGTEEECCCCHHHHHHHHHHHHHTSSSCC
T ss_pred eecccccCCCcccccHHHHHHHHHHHHHHhhCCCC
Confidence 863 3578899999999999998754
|
| >d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Trypanosoma cruzi [TaxId: 5693]
Probab=99.82 E-value=5.5e-20 Score=152.88 Aligned_cols=114 Identities=39% Similarity=0.690 Sum_probs=106.1
Q ss_pred CCCCCceecchhhhcCCCCCCeEEEEcCcHHHHHHHHHHHhCC---CeEEEEeecCccCCCCCHHHHHHHHHHHHhcCcE
Q 008860 226 IPGSEYAIDSDAALDLPSKPEKIAIVGGGYIALEFAGIFSGLT---SEVHVFIRQKKVLRGFDEDIRDFVAEQMSLRGIE 302 (551)
Q Consensus 226 i~g~~~~~~~~~~~~~~~~~~~vvViG~G~~g~e~a~~l~~~g---~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~ 302 (551)
+||.++++++++++.+.+.|++++|||+|++|+|+|..+.+++ .+||++++.+++++.+|+++++.+++.|+++||+
T Consensus 1 iPG~~~~~t~~~~~~l~~~p~~v~ivGgG~ig~E~A~~l~~l~~~~~~Vtli~~~~~iL~~~d~~~~~~l~~~l~~~GV~ 80 (117)
T d1aoga2 1 IPGIEHCISSNEAFYLPEPPRRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGEMILRGFDHTLREELTKQLTANGIQ 80 (117)
T ss_dssp CTTGGGCBCHHHHTTCSSCCSEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSSSSTTSCHHHHHHHHHHHHHTTCE
T ss_pred CcCccceEcHHHHhCchhcCCeEEEECCcHHHHHHHHHhhhcccCCcEEEEEeccchhhcccchHHHHHHHHHHHhcCcE
Confidence 6888899999999999999999999999999999998887764 5799999999999999999999999999999999
Q ss_pred EEcCcccEEEEEcCCceEEEEECCCeEEEeeEEEEec
Q 008860 303 FHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFAT 339 (551)
Q Consensus 303 i~~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~ 339 (551)
+++++++++++...++.+.+++++|++++||.||+|+
T Consensus 81 v~~~~~v~~ie~~~~~~~~v~~~~G~~i~~D~Vi~AI 117 (117)
T d1aoga2 81 ILTKENPAKVELNADGSKSVTFESGKKMDFDLVMMAI 117 (117)
T ss_dssp EEESCCEEEEEECTTSCEEEEETTSCEEEESEEEECS
T ss_pred EEcCCEEEEEEEcCCCeEEEEECCCcEEEeCEEEEeC
Confidence 9999999999987666588999999999999999984
|
| >d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Probab=99.82 E-value=3.5e-20 Score=164.99 Aligned_cols=149 Identities=22% Similarity=0.281 Sum_probs=117.6
Q ss_pred eEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCCCCCHHHH-------------HHHHHHHHhcCcEEEcCcccEEEE
Q 008860 247 KIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIR-------------DFVAEQMSLRGIEFHTEESPQAIL 313 (551)
Q Consensus 247 ~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~~~~~~~~-------------~~l~~~l~~~Gv~i~~~~~v~~i~ 313 (551)
||+|||+|++|+|+|..|++ +.+||++++.+.+.. .++.+. ....+.+++.++++++++.++.++
T Consensus 2 rVvIIGgG~~G~e~A~~l~~-~~~Vtvv~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~i~ 79 (167)
T d1xhca1 2 KVVIVGNGPGGFELAKQLSQ-TYEVTVIDKEPVPYY-SKPMLSHYIAGFIPRNRLFPYSLDWYRKRGIEIRLAEEAKLID 79 (167)
T ss_dssp EEEEECCSHHHHHHHHHHTT-TSEEEEECSSSSCCC-CSTTHHHHHTTSSCGGGGCSSCHHHHHHHTEEEECSCCEEEEE
T ss_pred eEEEECCcHHHHHHHHHHHc-CCCEEEEeccccccc-cccchhhhhhhhhhhhhhhHHHHHHHHhccceeeeeccccccc
Confidence 79999999999999999976 679999998764321 111122 223456788899999999999986
Q ss_pred EcCCceEEEEECCCeEEEeeEEEEecCcCCCCCCCCccccCeeecCCCCeEeCCCCCCCCCcEEEeCcCCCC----CCCh
Q 008860 314 KSTDGSLSVKTNKGTVDGFSHVMFATGRRPNTKNLGLEKVGVKMTKNGAIEVDEYSGTAVPSIWAVGDVTDR----INLT 389 (551)
Q Consensus 314 ~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~t~~~~vya~GD~~~~----~~~~ 389 (551)
... . +.+.+++++++|.+++|+|..|+. + ++..+++.+. .|.||+++||+.|+|||+|||+.. ++.+
T Consensus 80 ~~~-~---~~~~~~~~i~~D~li~a~G~~~~~-~--~~~~gl~~~~--~i~v~~~~~t~~~~i~aiGD~~~~~~~~~~~~ 150 (167)
T d1xhca1 80 RGR-K---VVITEKGEVPYDTLVLATGAPNVD-L--ARRSGIHTGR--GILIDDNFRTSAKDVYAIGDCAEYSGIIAGTA 150 (167)
T ss_dssp TTT-T---EEEESSCEEECSEEEECCCEECCH-H--HHHTTCCBSS--SEECCTTSBCSSTTEEECGGGEEBTTBCCCSH
T ss_pred ccc-c---cccccccccccceeEEEEEecCCc-h--hhhcCceeCC--ceeeccccEecCCCeEEeeecccCCCeEEChH
Confidence 432 2 445566679999999999997753 3 5677887654 599999999999999999999875 3678
Q ss_pred HHHHHhHHHHHHHHcCC
Q 008860 390 PVALMEGGALAKTLFQA 406 (551)
Q Consensus 390 ~~A~~~g~~aa~~i~g~ 406 (551)
+.|+.||+++|+||+|+
T Consensus 151 ~~a~~~a~~~a~~i~Ge 167 (167)
T d1xhca1 151 KAAMEQARVLADILKGE 167 (167)
T ss_dssp HHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHcCCC
Confidence 89999999999999874
|
| >d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Apoptosis-inducing factor (AIF) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.81 E-value=8.8e-21 Score=175.73 Aligned_cols=158 Identities=16% Similarity=0.224 Sum_probs=122.6
Q ss_pred CeEEEEcCcHHHHHHHHHHHhCCC--eEEEEeecCccC------CC-----C-----------------------CHH--
Q 008860 246 EKIAIVGGGYIALEFAGIFSGLTS--EVHVFIRQKKVL------RG-----F-----------------------DED-- 287 (551)
Q Consensus 246 ~~vvViG~G~~g~e~a~~l~~~g~--~Vtlv~~~~~~l------~~-----~-----------------------~~~-- 287 (551)
.+++|||+|++|+++|..|++.+. +|+++.+.+.+. +. . +++
T Consensus 5 ~~~vIvG~G~aG~~~A~~Lr~~~~~~~I~li~~e~~~py~r~~Ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (213)
T d1m6ia1 5 VPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPELPYMRPPLSKELWFSDDPNVTKTLRFKQWNGKERSIYFQPPSFY 84 (213)
T ss_dssp EEEEEESCSHHHHHHHHHHHHHSTTCEEEEEESSSSCCBCSGGGGTGGGCC--CTHHHHCEEECTTSCEEESBSSCGGGS
T ss_pred CCEEEECCcHHHHHHHHHHHhcCCCCcEEEEeCCCCCCccccccceecccccCchhhhhhhhhhcccchhhhhcCChhhh
Confidence 368999999999999999988764 699998654321 00 0 000
Q ss_pred HHHHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCcCCCCCCCCccccCeeec-CCCCeEeC
Q 008860 288 IRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNTKNLGLEKVGVKMT-KNGAIEVD 366 (551)
Q Consensus 288 ~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~~~~l~l~~~gl~~~-~~G~i~vd 366 (551)
........+++.||+++++++|++|+.+++ +|+++||++++||.+|+|+|..|+...+ ....+++++ ..|.|.||
T Consensus 85 ~~~~~~~~~~~~gI~~~~g~~V~~id~~~~---~V~l~dG~~i~~d~lViAtG~~~~~~~l-~~~~gl~~~~~~~~i~vd 160 (213)
T d1m6ia1 85 VSAQDLPHIENGGVAVLTGKKVVQLDVRDN---MVKLNDGSQITYEKCLIATGGTEPNVEL-AKTGGLEIDSDFGGFRVN 160 (213)
T ss_dssp BCTTTTTTSTTCEEEEEETCCEEEEEGGGT---EEEETTSCEEEEEEEEECCCEEEECCTT-HHHHTCCBCTTTCSEECC
T ss_pred hhhhhHHHHHHCCeEEEeCCEEEEeeccCc---eeeeccceeeccceEEEeeeeecchhhh-hhccchhhhhhhhhhhhh
Confidence 011122345678999999999999977654 4889999999999999999987765433 566788875 45789999
Q ss_pred CCCCCCCCcEEEeCcCCCC---------CCChHHHHHhHHHHHHHHcCCCC
Q 008860 367 EYSGTAVPSIWAVGDVTDR---------INLTPVALMEGGALAKTLFQAEP 408 (551)
Q Consensus 367 ~~~~t~~~~vya~GD~~~~---------~~~~~~A~~~g~~aa~~i~g~~~ 408 (551)
++|||+ |+|||+|||+.. +.++..|..||++||+||+|.+.
T Consensus 161 ~~l~~~-~~VyA~GD~a~~~~~~~g~~~i~~~~~A~~~gr~aa~ni~g~~~ 210 (213)
T d1m6ia1 161 AELQAR-SNIWVAGDAACFYDIKLGRRRVEHHDHAVVSGRLAGENMTGAAK 210 (213)
T ss_dssp TTCEEE-TTEEECGGGEEEEETTTEEECCCCHHHHHHHHHHHHHHHTSCCC
T ss_pred HhcCcC-CceEEeeeeeeeccccCCcEEeeEhHHHHHHHHHHHHHhcCCCC
Confidence 999998 999999999862 46888999999999999999654
|
| >d1nhpa3 d.87.1.1 (A:322-447) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CO dehydrogenase flavoprotein C-domain-like superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Probab=99.81 E-value=2e-20 Score=157.20 Aligned_cols=112 Identities=19% Similarity=0.238 Sum_probs=92.4
Q ss_pred EEEecCCceEEeeCCHHHHHhcCCCeEEEEeeccCcccccccCCCcEEEEEEEECCCCeEEEEEEECC-ChhHHHHHHHH
Q 008860 418 SAVFSQPPIGQVGLSEEQAIQEYGDIDVFTANFRPLKATLSGLPDRIFMKLVLCAKTNKVLGLHMCGE-DAPEIVQGFAV 496 (551)
Q Consensus 418 ~~~~~~~~~~~vGl~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~~~~~~ilG~~~~g~-~~~e~i~~~~~ 496 (551)
..+| +|++++||+||+||++.+.++.+........ ..+..+..++|+||++|++|++|||+|++|+ ++.|+|+.+++
T Consensus 8 ~~vf-d~eiasvGlte~eA~~~g~~~~~~~~~~~~~-~~~~~~~~~g~~Kli~d~~t~~IlG~~ivG~~~a~e~I~~~~~ 85 (126)
T d1nhpa3 8 LAVF-DYKFASTGINEVMAQKLGKETKAVTVVEDYL-MDFNPDKQKAWFKLVYDPETTQILGAQLMSKADLTANINAISL 85 (126)
T ss_dssp EEET-TEEEEEEECCHHHHHHHTCCCEEEEEEEESS-CTTCTTCCEEEEEEEECTTTCBEEEEEEEESSCCTTHHHHHHH
T ss_pred EeEc-CccEEEecccHHHHHHCCCCEEEEEEecCcc-hhhcCCCcceeEEEEEECCCCCEEEEEEEechhHHHHHHHHHH
Confidence 4677 8999999999999999987877766544332 2234466789999999999999999999996 59999999999
Q ss_pred HHHCCCCHHHHccCccc-CCCchHHHHHHHhhhhhh
Q 008860 497 AVKAGLTKADFDATVGV-HPTAAEEFVTLRTPTRKI 531 (551)
Q Consensus 497 ~i~~~~~~~~l~~~~~~-~pt~~e~~~~~~~~~~~~ 531 (551)
||++|+|++||.++.++ |||++|.+..+..++.+.
T Consensus 86 ai~~~~t~~dL~~~~~~yhPt~se~~~~l~~aA~~a 121 (126)
T d1nhpa3 86 AIQAKMTIEDLAYADFFFQPAFDKPWNIINTAALEA 121 (126)
T ss_dssp HHHTTCBHHHHHTCCCCCCTTTCCSSCHHHHHHHHH
T ss_pred HHHcCCCHHHHhcCcccCCCCCchhHHHHHHHHHHH
Confidence 99999999999998775 899999876555555543
|
| >d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=99.81 E-value=2.5e-19 Score=149.04 Aligned_cols=114 Identities=23% Similarity=0.494 Sum_probs=104.3
Q ss_pred CCCCCCCceecchhhhcCCCCCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCCCCCHHHHHHHHHHHHhcCcEE
Q 008860 224 PDIPGSEYAIDSDAALDLPSKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRDFVAEQMSLRGIEF 303 (551)
Q Consensus 224 p~i~g~~~~~~~~~~~~~~~~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i 303 (551)
|.+|+.+.++++++++.+.+.|++++|||+|++|+|+|..|+++|.+||++++.+++++.+|+++++.+.+.|+++||++
T Consensus 1 P~~~~~~~i~~s~~~l~~~~~p~~v~IiGgG~ig~E~A~~l~~~G~~Vtlve~~~~il~~~d~~~~~~l~~~l~~~GI~i 80 (117)
T d1ebda2 1 PNFKFSNRILDSTGALNLGEVPKSLVVIGGGYIGIELGTAYANFGTKVTILEGAGEILSGFEKQMAAIIKKRLKKKGVEV 80 (117)
T ss_dssp TTBCCCSSEECHHHHHTCSSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTTSCHHHHHHHHHHHHHTTCEE
T ss_pred CcCCCCCCEEChhHhhChhhcCCeEEEECCCccceeeeeeecccccEEEEEEecceecccccchhHHHHHHHHHhcCCEE
Confidence 67888889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCcccEEEEEcCCceEEEEE-CCC--eEEEeeEEEEe
Q 008860 304 HTEESPQAILKSTDGSLSVKT-NKG--TVDGFSHVMFA 338 (551)
Q Consensus 304 ~~~~~v~~i~~~~~~~~~V~~-~~G--~~i~~d~vi~a 338 (551)
+++++|++++.++++ +.+.+ .+| +++++|.|+++
T Consensus 81 ~~~~~v~~i~~~~~~-~~v~~~~~g~~~~i~~D~Vlvs 117 (117)
T d1ebda2 81 VTNALAKGAEEREDG-VTVTYEANGETKTIDADYVLVT 117 (117)
T ss_dssp EESEEEEEEEEETTE-EEEEEEETTEEEEEEESEEEEC
T ss_pred EcCCEEEEEEEcCCE-EEEEEEeCCCEEEEEeEEEEEC
Confidence 999999999988776 55554 344 46999999974
|
| >d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Azotobacter vinelandii [TaxId: 354]
Probab=99.80 E-value=3.4e-19 Score=148.29 Aligned_cols=110 Identities=24% Similarity=0.418 Sum_probs=102.6
Q ss_pred CceecchhhhcCCCCCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCCCCCHHHHHHHHHHHHhcCcEEEcCccc
Q 008860 230 EYAIDSDAALDLPSKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRDFVAEQMSLRGIEFHTEESP 309 (551)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~~~~~v 309 (551)
+.++++++++++++.|++++|||+|++|+|+|..|+++|++|+++++.+++++.+|+++.+.+++.|+++||++++++++
T Consensus 7 ~~v~~s~~~l~l~~~p~~i~IiG~G~ig~E~A~~l~~~G~~Vtiv~~~~~ll~~~d~ei~~~l~~~l~~~Gv~i~~~~~v 86 (119)
T d3lada2 7 DVIVDSTGALDFQNVPGKLGVIGAGVIGLELGSVWARLGAEVTVLEAMDKFLPAVDEQVAKEAQKILTKQGLKILLGARV 86 (119)
T ss_dssp SSEEEHHHHTSCSSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTTSCHHHHHHHHHHHHHTTEEEEETCEE
T ss_pred CEEEchhHhhCcccCCCeEEEECCChHHHHHHHHHHHcCCceEEEEeecccCCcccchhHHHHHHHHHhcCceeecCcEE
Confidence 46889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEcCCceEEEEECCC---eEEEeeEEEEecC
Q 008860 310 QAILKSTDGSLSVKTNKG---TVDGFSHVMFATG 340 (551)
Q Consensus 310 ~~i~~~~~~~~~V~~~~G---~~i~~d~vi~a~G 340 (551)
++++.++++ +.+++.++ ++++||.|++|+|
T Consensus 87 ~~i~~~~~~-v~v~~~~~~~~~~~~~D~vlvAvG 119 (119)
T d3lada2 87 TGTEVKNKQ-VTVKFVDAEGEKSQAFDKLIVAVG 119 (119)
T ss_dssp EEEEECSSC-EEEEEESSSEEEEEEESEEEECSC
T ss_pred EEEEEeCCE-EEEEEEECCCCEEEECCEEEEeeC
Confidence 999998877 66776544 4799999999998
|
| >d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.80 E-value=2.4e-19 Score=150.74 Aligned_cols=115 Identities=36% Similarity=0.584 Sum_probs=104.0
Q ss_pred CCCCCCceecchhhhcCCCCCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCCCCCHHHHHHHHHHHHhcCcEEE
Q 008860 225 DIPGSEYAIDSDAALDLPSKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRDFVAEQMSLRGIEFH 304 (551)
Q Consensus 225 ~i~g~~~~~~~~~~~~~~~~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~ 304 (551)
.|||.++++++++++.+++.|++++|||+|++|+|+|..|+++|.+||++++++++++.+|+++++.+.+.|+++||+++
T Consensus 2 ~IPG~e~~~ts~~~~~l~~~pk~vvIvGgG~iG~E~A~~l~~~G~~Vtlv~~~~~~l~~~d~~~~~~~~~~l~~~Gv~i~ 81 (125)
T d3grsa2 2 QIPGASLGITSDGFFQLEELPGRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDKVLRSFDSMISTNCTEELENAGVEVL 81 (125)
T ss_dssp TSTTGGGSBCHHHHTTCCSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTTSCHHHHHHHHHHHHHTTCEEE
T ss_pred CCCCccccCCHHHHhChhhcCCEEEEEcCCccHHHHHHHHhcCCcEEEEEeeccccccchhhHHHHHHHHHHHHCCCEEE
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcccEEEEEcCCceEEEEE---CCCe------EEEeeEEEEecC
Q 008860 305 TEESPQAILKSTDGSLSVKT---NKGT------VDGFSHVMFATG 340 (551)
Q Consensus 305 ~~~~v~~i~~~~~~~~~V~~---~~G~------~i~~d~vi~a~G 340 (551)
+++++++++.++++ +.+.+ .+|+ .+++|.|++|+|
T Consensus 82 ~~~~v~~i~~~~~g-~~v~~~~~~~g~~~~~~~~~~~D~vl~a~G 125 (125)
T d3grsa2 82 KFSQVKEVKKTLSG-LEVSMVTAVPGRLPVMTMIPDVDCLLWAIG 125 (125)
T ss_dssp TTEEEEEEEEETTE-EEEEEEECCTTSCCEEEEEEEESEEEECSC
T ss_pred eCCEEEEEEEcCCe-EEEEEEEccCCcCcCccccccCCEEEEEeC
Confidence 99999999987776 43332 3332 478999999998
|
| >d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Probab=99.80 E-value=7e-20 Score=165.75 Aligned_cols=157 Identities=22% Similarity=0.268 Sum_probs=121.9
Q ss_pred CCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCCC-C--------------CHHHHHHHHHHHHhcCcEEEcCccc
Q 008860 245 PEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRG-F--------------DEDIRDFVAEQMSLRGIEFHTEESP 309 (551)
Q Consensus 245 ~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~~-~--------------~~~~~~~l~~~l~~~Gv~i~~~~~v 309 (551)
.++|+|||+|++|+|+|..|+++|.+|+++...+..... . ...............++.+..+..+
T Consensus 3 ~~~VvIIGgG~~G~e~A~~l~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (185)
T d1q1ra1 3 NDNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDATVIPHHLPPLSKAYLAGKATAESLYLRTPDAYAAQNIQLLGGTQV 82 (185)
T ss_dssp SCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCCSCCBCSGGGGTTTTTTCSCSGGGBSSCHHHHHHTTEEEECSCCE
T ss_pred CCCEEEECCcHHHHHHHHHHHHcCCceEEEEecCccccchhhhHHHHHHHHhhhhhhhhhhhhhhhhcccceeeecccee
Confidence 579999999999999999999999998888766543211 1 1111122345567778888888888
Q ss_pred EEEEEcCCceEEEEECCCeEEEeeEEEEecCcCCCCCCCC-ccccCeeecCCCCeEeCCCCCCCCCcEEEeCcCCCC---
Q 008860 310 QAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNTKNLG-LEKVGVKMTKNGAIEVDEYSGTAVPSIWAVGDVTDR--- 385 (551)
Q Consensus 310 ~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~~~~l~-l~~~gl~~~~~G~i~vd~~~~t~~~~vya~GD~~~~--- 385 (551)
..+..+. ..+...++.++++|.+++++|..|++..+. ++..++.. +|++.||+++||+.|+|||+|||+..
T Consensus 83 ~~~~~~~---~~v~~~~~~~i~~d~~i~~~G~~~~~~~~~~~~~~~~~~--~~~i~Vd~~~~ts~~~vya~GD~~~~~~~ 157 (185)
T d1q1ra1 83 TAINRDR---QQVILSDGRALDYDRLVLATGGRPLIPNCELASAAGLQV--DNGIVINEHMQTSDPLIMAVGDCARFHSQ 157 (185)
T ss_dssp EEEETTT---TEEEETTSCEEECSEEEECCCEEEEEECCHHHHHTTCCB--SSSEECCTTSBCSSTTEEECGGGEEEEET
T ss_pred eeecccc---cEEEeeceeEEEeeeeeeeeecccCCCCchhHHhCCccc--cCccccCCccccchhhhhcchhhhccccc
Confidence 7776544 347888888999999999999988665433 34555554 46899999999999999999999874
Q ss_pred -------CCChHHHHHhHHHHHHHHcCC
Q 008860 386 -------INLTPVALMEGGALAKTLFQA 406 (551)
Q Consensus 386 -------~~~~~~A~~~g~~aa~~i~g~ 406 (551)
.++++.|.+||++||+||+|+
T Consensus 158 ~~~~~~~~~~a~~A~~~g~~aa~~i~G~ 185 (185)
T d1q1ra1 158 LYDRWVRIESVPNALEQARKIAAILCGK 185 (185)
T ss_dssp TTTEEEECCSHHHHHHHHHHHHHHHTTC
T ss_pred cCCcccchhhHHHHHHHHHHHHHHccCC
Confidence 358999999999999999984
|
| >d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.78 E-value=1.4e-18 Score=145.08 Aligned_cols=109 Identities=22% Similarity=0.362 Sum_probs=98.7
Q ss_pred CceecchhhhcCCCCCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCCCCCHHHHHHHHHHHHhcCcEEEcCccc
Q 008860 230 EYAIDSDAALDLPSKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRDFVAEQMSLRGIEFHTEESP 309 (551)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~~~~~v 309 (551)
.+++++++++++.+.|++++|||+|++|+|+|..|+++|.+||++++.+++++.+|+++++.+++.++++||+++++++|
T Consensus 8 ~~v~ts~~~~~l~~~p~~~vIiG~G~ig~E~A~~l~~lG~~Vtii~~~~~~l~~~d~ei~~~l~~~l~~~GV~i~~~~~v 87 (122)
T d1v59a2 8 EKIVSSTGALSLKEIPKRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQIGASMDGEVAKATQKFLKKQGLDFKLSTKV 87 (122)
T ss_dssp SSEECHHHHTTCSSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSSSSCHHHHHHHHHHHHHTTCEEECSEEE
T ss_pred CEEEehHHhhCcccCCCeEEEECCCchHHHHHHHHHhhCcceeEEEeccccchhhhhhhHHHHHHHHHhccceEEeCCEE
Confidence 45899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEcCCc-eEEEEECCC-----eEEEeeEEEEe
Q 008860 310 QAILKSTDG-SLSVKTNKG-----TVDGFSHVMFA 338 (551)
Q Consensus 310 ~~i~~~~~~-~~~V~~~~G-----~~i~~d~vi~a 338 (551)
++++.++++ .+.+++.++ +++++|.|++|
T Consensus 88 ~~v~~~~~~~~v~~~~~~~~~~~~~~ie~D~vlvA 122 (122)
T d1v59a2 88 ISAKRNDDKNVVEIVVEDTKTNKQENLEAEVLLVA 122 (122)
T ss_dssp EEEEEETTTTEEEEEEEETTTTEEEEEEESEEEEC
T ss_pred EEEEEeCCCcEEEEEEEeCCCCCeEEEEeCEEEEC
Confidence 999887665 455555443 37999999986
|
| >d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=99.75 E-value=3.9e-18 Score=142.71 Aligned_cols=110 Identities=26% Similarity=0.475 Sum_probs=98.6
Q ss_pred CceecchhhhcCCCCCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCCCCCHHHHHHHHHHHHhcCcEEEcCccc
Q 008860 230 EYAIDSDAALDLPSKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRDFVAEQMSLRGIEFHTEESP 309 (551)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~~~~~v 309 (551)
..++++++++++++.|++++|||+|++|+|+|..|+++|.+||++++.+++++.+++++.+.+.+.|+++||++++++++
T Consensus 10 ~~v~ts~~~l~l~~~p~~~viiG~G~iglE~A~~~~~~G~~Vtvi~~~~~~l~~~d~~~~~~l~~~l~~~GI~i~~~~~v 89 (123)
T d1dxla2 10 KKIVSSTGALALSEIPKKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASEIVPTMDAEIRKQFQRSLEKQGMKFKLKTKV 89 (123)
T ss_dssp SSEECHHHHTTCSSCCSEEEESCCSHHHHHHHHHHHHHTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHSSCCEECSEEE
T ss_pred CeEEeHHHhhCccccCCeEEEEccchHHHHHHHHHHhcCCeEEEEEEccccCchhhhcchhhhhhhhhcccceEEcCCce
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEcCCc-eEEEEECCC---eEEEeeEEEEec
Q 008860 310 QAILKSTDG-SLSVKTNKG---TVDGFSHVMFAT 339 (551)
Q Consensus 310 ~~i~~~~~~-~~~V~~~~G---~~i~~d~vi~a~ 339 (551)
++++.++++ .+.+...++ ++++||.|++|.
T Consensus 90 ~~i~~~~~~~~v~~~~~~~g~~~~i~~D~vLvAA 123 (123)
T d1dxla2 90 VGVDTSGDGVKLTVEPSAGGEQTIIEADVVLVSA 123 (123)
T ss_dssp EEEECSSSSEEEEEEESSSCCCEEEEESEEECCC
T ss_pred EEEEEccCeEEEEEEECCCCeEEEEEcCEEEEcC
Confidence 999987776 233444333 358999999874
|
| >d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Mammalian thioredoxin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.75 E-value=4.1e-18 Score=142.16 Aligned_cols=113 Identities=39% Similarity=0.687 Sum_probs=97.3
Q ss_pred CCC-CceecchhhhcCCCCCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCCCCCHHHHHHHHHHHHhcCcEEEc
Q 008860 227 PGS-EYAIDSDAALDLPSKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRDFVAEQMSLRGIEFHT 305 (551)
Q Consensus 227 ~g~-~~~~~~~~~~~~~~~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~~ 305 (551)
||. ++.+++++++++.+.|++++|||+|++|+|+|..|+++|.+||++.+. ++++.+|+++++.+.+.|+++||++++
T Consensus 1 Pg~~e~~~tsd~~~~l~~~P~~vvIIGgG~iG~E~A~~l~~lG~~Vtii~~~-~~l~~~D~~~~~~l~~~l~~~Gv~i~~ 79 (122)
T d1h6va2 1 PGDKEYCISSDDLFSLPYCPGKTLVVGASYVALECAGFLAGIGLDVTVMVRS-ILLRGFDQDMANKIGEHMEEHGIKFIR 79 (122)
T ss_dssp TTHHHHCBCHHHHTTCSSCCCSEEEECCSHHHHHHHHHHHHTTCCEEEEESS-SSSTTSCHHHHHHHHHHHHHTTEEEEE
T ss_pred CCccceeEcchHHhCcccCCCeEEEECCCccHHHHHHHHhhcCCeEEEEEec-hhhccCCHHHHHHHHHHHHHCCCEEEE
Confidence 555 467899999999999999999999999999999999999999999974 688999999999999999999999999
Q ss_pred CcccEEEEEcCC---ceEEEEECCC---e--EEEeeEEEEecC
Q 008860 306 EESPQAILKSTD---GSLSVKTNKG---T--VDGFSHVMFATG 340 (551)
Q Consensus 306 ~~~v~~i~~~~~---~~~~V~~~~G---~--~i~~d~vi~a~G 340 (551)
++.|++++..++ +.+.+.+.++ + .+++|.|++|+|
T Consensus 80 ~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~D~vl~AiG 122 (122)
T d1h6va2 80 QFVPTKIEQIEAGTPGRLKVTAKSTNSEETIEDEFNTVLLAVG 122 (122)
T ss_dssp SCEEEEEEEEECSTTCEEEEEEECTTSCEEEEEEESEEECCCC
T ss_pred CCEEEEEEEecCCCccEEEEEEEECCCCcEEEEECCEEEEEeC
Confidence 999999976432 2355554332 2 467999999998
|
| >d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=99.74 E-value=2.1e-18 Score=142.68 Aligned_cols=111 Identities=28% Similarity=0.403 Sum_probs=97.4
Q ss_pred CCCCceecchhhhcCCCCCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCCCCCHHHHHHHHHHHHhcCcEEEcC
Q 008860 227 PGSEYAIDSDAALDLPSKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRDFVAEQMSLRGIEFHTE 306 (551)
Q Consensus 227 ~g~~~~~~~~~~~~~~~~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~~~ 306 (551)
|....++++++++.+...|++++|||+|++|+|+|..|+++|++||++++.+++++.+++++++.+++.|+++||+++++
T Consensus 3 p~g~~~~~s~~~l~~~~~p~~vvIiGgG~~G~E~A~~l~~~g~~Vtlve~~~~il~~~d~~~~~~l~~~l~~~gV~i~~~ 82 (115)
T d1lvla2 3 PLGGPVISSTEALAPKALPQHLVVVGGGYIGLELGIAYRKLGAQVSVVEARERILPTYDSELTAPVAESLKKLGIALHLG 82 (115)
T ss_dssp CCBTTEECHHHHTCCSSCCSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHHTCEEETT
T ss_pred CCCCcEECChHHhCcccCCCeEEEECCCHHHHHHHHHHhhcccceEEEeeeccccccccchhHHHHHHHHHhhcceEEcC
Confidence 44456889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccEEEEEcCCceEEEEECC--CeEEEeeEEEEecC
Q 008860 307 ESPQAILKSTDGSLSVKTNK--GTVDGFSHVMFATG 340 (551)
Q Consensus 307 ~~v~~i~~~~~~~~~V~~~~--G~~i~~d~vi~a~G 340 (551)
++|++++ ++. ..+...+ +++++||.|++|+|
T Consensus 83 ~~V~~i~--~~~-~~~~~~~~~~~~i~~D~vi~A~G 115 (115)
T d1lvla2 83 HSVEGYE--NGC-LLANDGKGGQLRLEADRVLVAVG 115 (115)
T ss_dssp CEEEEEE--TTE-EEEECSSSCCCEECCSCEEECCC
T ss_pred cEEEEEc--CCe-EEEEEcCCCeEEEEcCEEEEecC
Confidence 9999985 222 3233333 34799999999998
|
| >d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Probab=99.73 E-value=5.9e-18 Score=140.86 Aligned_cols=113 Identities=23% Similarity=0.352 Sum_probs=96.5
Q ss_pred CCCCCCCCc-ee---cchhhhcCC---CCCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCCC-CCHHHHHHHHH
Q 008860 223 IPDIPGSEY-AI---DSDAALDLP---SKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRG-FDEDIRDFVAE 294 (551)
Q Consensus 223 ~p~i~g~~~-~~---~~~~~~~~~---~~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~~-~~~~~~~~l~~ 294 (551)
+|++||.+. ++ +.+++..+. ..+++++|||+|++|+|+|..|++.|.+||++++.+++++. +++++++.+.+
T Consensus 1 iP~ipG~~~~v~~lrtl~Da~~l~~~~~~~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~~~~~ 80 (121)
T d1d7ya2 1 LPTLQGATMPVHTLRTLEDARRIQAGLRPQSRLLIVGGGVIGLELAATARTAGVHVSLVETQPRLMSRAAPATLADFVAR 80 (121)
T ss_dssp CGGGTTCSSCEEECCSHHHHHHHHHHCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTTTSCHHHHHHHHH
T ss_pred CccCCCCCCCEEEeCCHHHHHHHHHhhhcCCeEEEECcchhHHHHHHHhhcccceEEEEeeccccccccCCHHHHHHHHH
Confidence 478888753 33 444544332 34789999999999999999999999999999999999975 89999999999
Q ss_pred HHHhcCcEEEcCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecC
Q 008860 295 QMSLRGIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATG 340 (551)
Q Consensus 295 ~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G 340 (551)
.++++||++++++.|+++.. + .+.+.||++++||.||+|+|
T Consensus 81 ~l~~~GV~i~~~~~v~~~~~--~---~v~l~dg~~i~~D~vi~a~G 121 (121)
T d1d7ya2 81 YHAAQGVDLRFERSVTGSVD--G---VVLLDDGTRIAADMVVVGIG 121 (121)
T ss_dssp HHHTTTCEEEESCCEEEEET--T---EEEETTSCEEECSEEEECSC
T ss_pred HHHHCCcEEEeCCEEEEEeC--C---EEEECCCCEEECCEEEEeeC
Confidence 99999999999999998753 2 27789999999999999998
|
| >d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Probab=99.72 E-value=3.3e-18 Score=143.06 Aligned_cols=115 Identities=23% Similarity=0.391 Sum_probs=98.7
Q ss_pred CCCCCCCCCCCceecchhhhcCCC------CCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCCCCCHHHHHHHH
Q 008860 220 RPFIPDIPGSEYAIDSDAALDLPS------KPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRDFVA 293 (551)
Q Consensus 220 ~p~~p~i~g~~~~~~~~~~~~~~~------~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~ 293 (551)
+|+.|++||.+++++.+++.+.+. .+++++|||+|++|+|+|..|+++|.+||++++.+.+++ +|+++.+.+.
T Consensus 1 R~r~p~ipG~e~~~t~~~~~d~~~l~~~~~~~~~vvIiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~l~~-~d~~~~~~~~ 79 (122)
T d1xhca2 1 RAREPQIKGKEYLLTLRTIFDADRIKESIENSGEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAMFLG-LDEELSNMIK 79 (122)
T ss_dssp EECCCCSBTGGGEECCCSHHHHHHHHHHHHHHSEEEEEECSHHHHHHHHHHHHTTCEEEEECSSSCCTT-CCHHHHHHHH
T ss_pred CCCCcCCCCccceEccCCHHHHHHHHHHhhcCCcEEEECCcHHHHHHHHHhhcccceEEEEeccccccC-CCHHHHHHHH
Confidence 478899999988877665544332 368999999999999999999999999999999999875 8999999999
Q ss_pred HHHHhcCcEEEcCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCc
Q 008860 294 EQMSLRGIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGR 341 (551)
Q Consensus 294 ~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~ 341 (551)
+.|+++||+++++++++++.. ++ + +.+++.+++|.||+|+|.
T Consensus 80 ~~l~~~GV~~~~~~~v~~~~~--~~---v-~~~~~~i~~D~vi~a~Gv 121 (122)
T d1xhca2 80 DMLEETGVKFFLNSELLEANE--EG---V-LTNSGFIEGKVKICAIGI 121 (122)
T ss_dssp HHHHHTTEEEECSCCEEEECS--SE---E-EETTEEEECSCEEEECCE
T ss_pred HHHHHCCcEEEeCCEEEEEeC--CE---E-EeCCCEEECCEEEEEEEe
Confidence 999999999999999999853 22 3 446778999999999995
|
| >d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Probab=99.72 E-value=7.4e-18 Score=142.94 Aligned_cols=101 Identities=22% Similarity=0.257 Sum_probs=91.2
Q ss_pred cCCCCCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCCC-CCHHHHHHHHHHHHhcCcEEEcCcccEEEEEcCC-
Q 008860 240 DLPSKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRG-FDEDIRDFVAEQMSLRGIEFHTEESPQAILKSTD- 317 (551)
Q Consensus 240 ~~~~~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~~-~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~- 317 (551)
+....+++++|||+|++|+|+|..|++.|.+|+++++.+++++. +++++.+.+++.++++||++++++.|++++...+
T Consensus 30 ~~~~~~k~v~VIGgG~iG~E~A~~l~~~g~~Vtvie~~~~~l~~~~~~~~~~~~~~~~~~~GV~i~~~~~v~~i~~~~~~ 109 (133)
T d1q1ra2 30 RQLIADNRLVVIGGGYIGLEVAATAIKANMHVTLLDTAARVLERVTAPPVSAFYEHLHREAGVDIRTGTQVCGFEMSTDQ 109 (133)
T ss_dssp HTCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTTTSCHHHHHHHHHHHHHHTCEEECSCCEEEEEECTTT
T ss_pred HhhccCCEEEEECCchHHHHHHHHHHhhCcceeeeeecccccccccchhhhhhhhhcccccccEEEeCCeEEEEEEeCCC
Confidence 34445899999999999999999999999999999999999986 7999999999999999999999999999987543
Q ss_pred -ceEEEEECCCeEEEeeEEEEecC
Q 008860 318 -GSLSVKTNKGTVDGFSHVMFATG 340 (551)
Q Consensus 318 -~~~~V~~~~G~~i~~d~vi~a~G 340 (551)
....+.+.+|+++++|.||+|+|
T Consensus 110 ~~v~~v~~~~G~~i~~D~vi~a~G 133 (133)
T d1q1ra2 110 QKVTAVLCEDGTRLPADLVIAGIG 133 (133)
T ss_dssp CCEEEEEETTSCEEECSEEEECCC
T ss_pred ceEEEEECCCCCEEECCEEEEeeC
Confidence 33458899999999999999998
|
| >d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.66 E-value=6.8e-16 Score=140.03 Aligned_cols=154 Identities=23% Similarity=0.209 Sum_probs=122.9
Q ss_pred CCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccC----------------CC-----CCHHHHHHHHHHHHhcCcEE
Q 008860 245 PEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVL----------------RG-----FDEDIRDFVAEQMSLRGIEF 303 (551)
Q Consensus 245 ~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l----------------~~-----~~~~~~~~l~~~l~~~Gv~i 303 (551)
.++|+|||+|+.|+++|..+++.|.+|.++++..... .. ..+++...+.+.+++.|+++
T Consensus 5 ~~~VvIIGgGpaGl~aA~~~ar~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~~~~~q~~~~g~~i 84 (192)
T d1vdca1 5 NTRLCIVGSGPAAHTAAIYAARAELKPLLFEGWMANDIAPGGQLTTTTDVENFPGFPEGILGVELTDKFRKQSERFGTTI 84 (192)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBTTBCTTCGGGGCSEECCSTTCTTCEEHHHHHHHHHHHHHHTTCEE
T ss_pred cceEEEECCCHHHHHHHHHHHHcCCcEEEEEeecccccccccccccchhhhccccccccccchHHHHHHHHHHHhhccee
Confidence 4689999999999999999999999999998654210 11 23567777778888889999
Q ss_pred EcCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCc-----CCCCCCCCccccCeeecCCCCeEeCC-CCCCCCCcEE
Q 008860 304 HTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGR-----RPNTKNLGLEKVGVKMTKNGAIEVDE-YSGTAVPSIW 377 (551)
Q Consensus 304 ~~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~-----~p~~~~l~l~~~gl~~~~~G~i~vd~-~~~t~~~~vy 377 (551)
... .|.+++..++. ..+.+.. ....+|.+++++|. .|++.+ ...+++++++|+|.+|+ +++|++|+||
T Consensus 85 ~~~-~V~~~~~~~~~-~~v~~~~-~~~~~~~~~~a~g~~~~g~~p~~~~---~~~~veld~~G~i~~~~~~~~Ts~~GV~ 158 (192)
T d1vdca1 85 FTE-TVTKVDFSSKP-FKLFTDS-KAILADAVILAIGAVAKGHEPATKF---LDGGVELDSDGYVVTKPGTTQTSVPGVF 158 (192)
T ss_dssp ECC-CCCEEECSSSS-EEEECSS-EEEEEEEEEECCCEEECCEEESCGG---GTTSSCBCTTSCBCCCTTSCBCSSTTEE
T ss_pred eee-eEEecccccCc-EEecccc-eeeeeeeEEEEeeeeecccCchHHH---hcCceeecCCCeEEeCCCceEecCCCEE
Confidence 876 78888766654 5555544 46899999999985 477765 23478999999999996 7899999999
Q ss_pred EeCcCCCCC-CChHHHHHhHHHHHHHHc
Q 008860 378 AVGDVTDRI-NLTPVALMEGGALAKTLF 404 (551)
Q Consensus 378 a~GD~~~~~-~~~~~A~~~g~~aa~~i~ 404 (551)
|+|||.+.+ .....|..+|+.||..+.
T Consensus 159 a~GDv~~~~~r~~v~A~g~G~~aA~~~~ 186 (192)
T d1vdca1 159 AAGDVQDKKYRQAITAAGTGCMAALDAE 186 (192)
T ss_dssp ECGGGGCSSCCCHHHHHHHHHHHHHHHH
T ss_pred EeeecCCcccceEEEEEechHHHHHHHH
Confidence 999999865 578889999999998763
|
| >d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]
Probab=99.63 E-value=8.7e-16 Score=137.81 Aligned_cols=155 Identities=19% Similarity=0.141 Sum_probs=112.1
Q ss_pred CCeEEEEcCcHHHHHHHHHHHhCC--CeEEEEeecCccCCCCCHHHHHH----------HHHHHHhcCcEEEcCcccEEE
Q 008860 245 PEKIAIVGGGYIALEFAGIFSGLT--SEVHVFIRQKKVLRGFDEDIRDF----------VAEQMSLRGIEFHTEESPQAI 312 (551)
Q Consensus 245 ~~~vvViG~G~~g~e~a~~l~~~g--~~Vtlv~~~~~~l~~~~~~~~~~----------l~~~l~~~Gv~i~~~~~v~~i 312 (551)
+|||+|||+|++|+|+|..|++.+ .+|+++++.+.+........... ....+...++.+..+ .+..+
T Consensus 2 gkrivIvGgG~~G~e~A~~l~~~~~~~~Vtlie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~ 80 (186)
T d1fcda1 2 GRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNTDYYTCYLSNEVIGGDRKLESIKHGYDGLRAHGIQVVHD-SATGI 80 (186)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCSCEECSTTHHHHHHTSSCGGGGEECSHHHHTTTEEEECC-CEEEC
T ss_pred CCcEEEECccHHHHHHHHHHHHcCCCCcEEEEECCCccccccccccccchhhhhhhhhhhhhhccccceeEeee-eeEee
Confidence 689999999999999999999987 48999999887654322211111 123455677887765 44444
Q ss_pred EEcCCceEEEEECCCeEEEeeEEEEecCcCCCCCCCCccc------cCeeecCCCCeEeCCC-CC-CCCCcEEEeCcCCC
Q 008860 313 LKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNTKNLGLEK------VGVKMTKNGAIEVDEY-SG-TAVPSIWAVGDVTD 384 (551)
Q Consensus 313 ~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~~~~l~l~~------~gl~~~~~G~i~vd~~-~~-t~~~~vya~GD~~~ 384 (551)
.... ..+.+.+++++++|.+|+|+|..|++..+.... .++..+ ++++.++.+ ++ ++.++||++||++.
T Consensus 81 ~~~~---~~~~~~~~~~i~~D~li~atG~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~iGd~~~ 156 (186)
T d1fcda1 81 DPDK---KLVKTAGGAEFGYDRCVVAPGIELIYDKIEQRAGKIAQIAGLTND-AGWCPVDIKTFESSIHKGIHVIGDASI 156 (186)
T ss_dssp CTTT---TEEEETTSCEEECSEEEECCCEEECCTTSTEEECHHHHHHTCCCT-TSSEEBCSSSCBBSSSTTEEECTTSEE
T ss_pred eecc---ceeecccceeeccceEEEEeccccchhhhhhhhhhheeccCcccc-cccccceeeeeecccccCceEeccccc
Confidence 3222 347788899999999999999999988753221 133333 345666653 43 68999999999997
Q ss_pred C---CCChHHHHHhHHHHHHHHc
Q 008860 385 R---INLTPVALMEGGALAKTLF 404 (551)
Q Consensus 385 ~---~~~~~~A~~~g~~aa~~i~ 404 (551)
. ++.+..|.+||+++|+||.
T Consensus 157 ~~~~p~~~~~A~~q~~~~A~ni~ 179 (186)
T d1fcda1 157 ANPMPKSGYSANSQGKVAAAAVV 179 (186)
T ss_dssp CTTCCSSHHHHHHHHHHHHHHHH
T ss_pred cCCCCchHhHHHHHHHHHHHHHH
Confidence 5 4668899999999999986
|
| >d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Probab=99.62 E-value=2.1e-15 Score=125.72 Aligned_cols=95 Identities=20% Similarity=0.284 Sum_probs=85.2
Q ss_pred CCCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCCC-CCHHHHHHHHHHHHhcCcEEEcCcccEEEEEcCCceEE
Q 008860 243 SKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRG-FDEDIRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLS 321 (551)
Q Consensus 243 ~~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~~-~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~ 321 (551)
..+++++|||+|++|+|+|..|+++|.+||++++.+++++. +++++++.+++.++++||++++++.+++++.++ . +.
T Consensus 28 ~~~k~vvViGgG~iG~E~A~~l~~~g~~Vtlie~~~~~l~~~~d~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~-~-~~ 105 (123)
T d1nhpa2 28 PEVNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRPLGVYLDKEFTDVLTEEMEANNITIATGETVERYEGDG-R-VQ 105 (123)
T ss_dssp TTCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTTTCCHHHHHHHHHHHHTTTEEEEESCCEEEEECSS-B-CC
T ss_pred cCCCEEEEECChHHHHHHHHHhhccceEEEEEEecCcccccccchhhHHHHHHHhhcCCeEEEeCceEEEEEcCC-C-EE
Confidence 35789999999999999999999999999999999999876 899999999999999999999999999998754 3 33
Q ss_pred EEECCCeEEEeeEEEEec
Q 008860 322 VKTNKGTVDGFSHVMFAT 339 (551)
Q Consensus 322 V~~~~G~~i~~d~vi~a~ 339 (551)
..+.||++++||.||+|+
T Consensus 106 ~v~~dg~~i~~D~vi~aI 123 (123)
T d1nhpa2 106 KVVTDKNAYDADLVVVAV 123 (123)
T ss_dssp EEEESSCEEECSEEEECS
T ss_pred EEEeCCCEEECCEEEEEC
Confidence 446788889999999984
|
| >d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Apoptosis-inducing factor (AIF) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.62 E-value=2.1e-15 Score=128.43 Aligned_cols=107 Identities=21% Similarity=0.326 Sum_probs=94.4
Q ss_pred cchhhhcCC---CCCCeEEEEcCcHHHHHHHHHHH----hCCCeEEEEeecCccCCC-CCHHHHHHHHHHHHhcCcEEEc
Q 008860 234 DSDAALDLP---SKPEKIAIVGGGYIALEFAGIFS----GLTSEVHVFIRQKKVLRG-FDEDIRDFVAEQMSLRGIEFHT 305 (551)
Q Consensus 234 ~~~~~~~~~---~~~~~vvViG~G~~g~e~a~~l~----~~g~~Vtlv~~~~~~l~~-~~~~~~~~l~~~l~~~Gv~i~~ 305 (551)
+.+++..+. +.+++++|||+|++|+|+|..|. +.|.+|+++++.+++++. +++++++.+.+.++++||++++
T Consensus 23 ~~~d~~~l~~~~~~~k~i~IvGgG~~G~E~A~~l~~~~~~~g~~Vt~i~~~~~~l~~~~~~~~~~~~~~~l~~~GV~~~~ 102 (137)
T d1m6ia2 23 KIGDFRSLEKISREVKSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGNMGKILPEYLSNWTMEKVRREGVKVMP 102 (137)
T ss_dssp SHHHHHHHHHHHHHCSEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSSSTTTTTSCHHHHHHHHHHHHTTTCEEEC
T ss_pred CHHHHHHHHHHhhcCCEEEEECCCHHHHHHHHHHHHHHHhcCCEEEEecccccCCcccCCHHHHHHHHHHHHhCCcEEEe
Confidence 555555443 23789999999999999999985 469999999999999976 8999999999999999999999
Q ss_pred CcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCc
Q 008860 306 EESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGR 341 (551)
Q Consensus 306 ~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~ 341 (551)
++.|++++.++++ +.+++++|++++||.||+|+|.
T Consensus 103 ~~~V~~i~~~~~~-~~v~l~~G~~i~aD~Vi~A~Gv 137 (137)
T d1m6ia2 103 NAIVQSVGVSSGK-LLIKLKDGRKVETDHIVAAVGL 137 (137)
T ss_dssp SCCEEEEEEETTE-EEEEETTSCEEEESEEEECCCE
T ss_pred CCEEEEEEecCCE-EEEEECCCCEEECCEEEEeecC
Confidence 9999999987665 7899999999999999999984
|
| >d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Trimethylamine dehydrogenase, middle domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=99.61 E-value=2.9e-18 Score=161.02 Aligned_cols=166 Identities=14% Similarity=0.198 Sum_probs=105.6
Q ss_pred CCCCccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhhccCCC
Q 008860 69 SHYDFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDESNGFG 148 (551)
Q Consensus 69 ~~~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g 148 (551)
.....+|+|||||+||+++|..|+++|++|+|+|+ ...+||+|.+..++|..
T Consensus 46 ~~~~k~VvIIGaGpAGl~aA~~l~~~G~~v~l~E~---------~~~~GG~~~~~~~~~~~------------------- 97 (233)
T d1djqa3 46 TKNKDSVLIVGAGPSGSEAARVLMESGYTVHLTDT---------AEKIGGHLNQVAALPGL------------------- 97 (233)
T ss_dssp CSSCCEEEEECCSHHHHHHHHHHHHTTCEEEEECS---------SSSTTTTHHHHTTSTTC-------------------
T ss_pred ccCCceEEEEcccHHHHHHHHHHHHhccceeeEee---------ccccCCcccccccccee-------------------
Confidence 34568999999999999999999999999999993 66789988654443310
Q ss_pred cccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEeEEEEecCCEEEE-cCEEEEeCeEEEcCCCCCCCCCCC
Q 008860 149 WKYGTEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIEGRGKIVDPHTVDV-DGKLYSARHILISVGGRPFIPDIP 227 (551)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~i~~~~v~v-~g~~~~~d~lviAtG~~p~~p~i~ 227 (551)
.++.....+....+. . +...++.... ....+.+.. +...+.||++|+|||+.+..|.++
T Consensus 98 --------~~~~~~~~~~~~~~~-------~-~~~~~~~~~~----~~~~~~~~~~~~~~~~~d~vviAtG~~~~~~~~~ 157 (233)
T d1djqa3 98 --------GEWSYHRDYRETQIT-------K-LLKKNKESQL----ALGQKPMTADDVLQYGADKVIIATGASECTLWNE 157 (233)
T ss_dssp --------GGGGHHHHHHHHHHH-------H-HHTTCTTCEE----ECSCCCCCHHHHHTSCCSEEEECCCEECCHHHHH
T ss_pred --------ecccccchhHHHHHH-------H-Hhhcceeeee----ecccccccchhhhhhccceeeeccCCCccccccc
Confidence 111222221111111 1 1111221111 011111111 233568999999999988766443
Q ss_pred C--CCcee---cchhhhcCCCCCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCC
Q 008860 228 G--SEYAI---DSDAALDLPSKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLR 282 (551)
Q Consensus 228 g--~~~~~---~~~~~~~~~~~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~ 282 (551)
+ .+... ............++++|+|+|++|+|+|..|.+.|.+|+++++.+.++.
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~r~~~~~~ 217 (233)
T d1djqa3 158 LKARESEWAENDIKGIYLIGDAEAPRLIADATFTGHRVAREIEEANPQIAIPYKRETIAW 217 (233)
T ss_dssp HHHTTHHHHHTTCCEEEECGGGTSCCCHHHHHHHHHHHHHTTTSSCTTSCCCCCCCCCCT
T ss_pred ccccccccchhhhhhhhhccccCCceeEecCchHHHHHHHHHHhcCCceEEEEecccccc
Confidence 3 22221 1122222333467899999999999999999999999999999987653
|
| >d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase species: Xanthobacter sp., py2 [TaxId: 35809]
Probab=99.60 E-value=2.7e-15 Score=125.06 Aligned_cols=109 Identities=19% Similarity=0.334 Sum_probs=91.3
Q ss_pred eecchhhhc-CCC-CCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCCCCCHHHHHHHHHHHHhcCcEEEcCccc
Q 008860 232 AIDSDAALD-LPS-KPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRDFVAEQMSLRGIEFHTEESP 309 (551)
Q Consensus 232 ~~~~~~~~~-~~~-~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~~~~~v 309 (551)
+++...+.+ +.. .+++++|||+|++|+|+|..|+++|.+|+++++.+.+++.+++++++.+++.++++||++++++.+
T Consensus 7 v~~~~~~~~~l~~~~~~~vvVvGgG~ig~E~A~~l~~~g~~vt~i~~~~~~l~~~d~~~~~~~~~~l~~~gI~v~~~~~v 86 (121)
T d1mo9a2 7 VFDHATLVEELDYEPGSTVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEPLKLIKDNETRAYVLDRMKEQGMEIISGSNV 86 (121)
T ss_dssp EEEHHHHHHHCCSCCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTTTCCSHHHHHHHHHHHHHTTCEEESSCEE
T ss_pred EEeHHHHHHHHhhCCCCEEEEECCCHHHHHHHHHHHhcchhheEeeccchhhcccccchhhhhhhhhhccccEEEcCCEE
Confidence 444444332 222 368999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEcCCceEE-E---EECCCeEEEeeEEEEecC
Q 008860 310 QAILKSTDGSLS-V---KTNKGTVDGFSHVMFATG 340 (551)
Q Consensus 310 ~~i~~~~~~~~~-V---~~~~G~~i~~d~vi~a~G 340 (551)
++++.++++... + ...++++++||.||+|+|
T Consensus 87 ~~i~~~~~~~~~~~~~~~~~~~~~i~~D~Vi~a~G 121 (121)
T d1mo9a2 87 TRIEEDANGRVQAVVAMTPNGEMRIETDFVFLGLG 121 (121)
T ss_dssp EEEEECTTSBEEEEEEEETTEEEEEECSCEEECCC
T ss_pred EEEEecCCceEEEEEEEeCCCCEEEEcCEEEEEEC
Confidence 999988765322 2 224456799999999998
|
| >d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Escherichia coli [TaxId: 562]
Probab=99.60 E-value=6.6e-15 Score=133.17 Aligned_cols=156 Identities=16% Similarity=0.149 Sum_probs=117.6
Q ss_pred CCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCcc------------C--CC--CCHHHHHHHHHHHHhcCcEEEcCcc
Q 008860 245 PEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKV------------L--RG--FDEDIRDFVAEQMSLRGIEFHTEES 308 (551)
Q Consensus 245 ~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~------------l--~~--~~~~~~~~l~~~l~~~Gv~i~~~~~ 308 (551)
.++|+|||+|++|++.|.++++.|.+|+++++.+.. . +. ...++.+.+.+.+.+.++++... .
T Consensus 5 ~~dVvIIGGGpaGl~AA~~~ar~g~~v~iie~~~~~g~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 83 (190)
T d1trba1 5 HSKLLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQLTTTTEVENWPGDPNDLTGPLLMERMHEHATKFETEIIFD-H 83 (190)
T ss_dssp EEEEEEECCSHHHHHHHHHHHTTTCCCEEECCSSTTGGGGGCSBCCCSTTCCSSCBHHHHHHHHHHHHHHTTCEEECC-C
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCceEEEEeecccccccccchhhhhhccccccchHHHHHHHHHHHHhcCcEEecc-e
Confidence 468999999999999999999999999999875421 0 11 24566777888888999999876 7
Q ss_pred cEEEEEcCCceEEEEECCCeEEEeeEEEEecCcCCCCCCC--CccccCeeecCCCCeEeCC-----CCCCCCCcEEEeCc
Q 008860 309 PQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNTKNL--GLEKVGVKMTKNGAIEVDE-----YSGTAVPSIWAVGD 381 (551)
Q Consensus 309 v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~~~~l--~l~~~gl~~~~~G~i~vd~-----~~~t~~~~vya~GD 381 (551)
|+++...++. ..+...++ .+.++.+++++|..|..... .+....++++ +|+|.+|+ .++|++|+|||+||
T Consensus 84 V~~~~~~~~~-~~v~~~~~-~~~~~~viva~G~~~~~~~~~~~~~~~~~e~~-~g~i~~~~~~~~~~~~T~v~gV~aaGD 160 (190)
T d1trba1 84 INKVDLQNRP-FRLNGDNG-EYTCDALIIATGASARYHSPNTAIFEGQLELE-NGYIKVQSGIHGNATQTSIPGVFAAGD 160 (190)
T ss_dssp EEEEECSSSS-EEEEESSC-EEEEEEEEECCCEEECCEEESCGGGTTTSCEE-TTEECCCCSSSSCTTBCSSTTEEECGG
T ss_pred eEEEecCCCc-EEEEEeee-eEeeeeeeeecceeeeeecccceeecceEecC-CcEEEEecCCcccccccccCeEEEeEE
Confidence 8888776655 56666554 59999999999986643210 0112234444 48899995 45899999999999
Q ss_pred CCCC-CCChHHHHHhHHHHHHHHc
Q 008860 382 VTDR-INLTPVALMEGGALAKTLF 404 (551)
Q Consensus 382 ~~~~-~~~~~~A~~~g~~aa~~i~ 404 (551)
|++. +.++..|..+|..||.++.
T Consensus 161 v~~~~~~q~i~Aag~G~~AA~~a~ 184 (190)
T d1trba1 161 VMDHIYRQAITSAGTGCMAALDAE 184 (190)
T ss_dssp GGCSSSCCHHHHHHHHHHHHHHHH
T ss_pred ecCcceeEEEEEeccHHHHHHHHH
Confidence 9985 4678889999999997653
|
| >d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Trimethylamine dehydrogenase, C-terminal domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=99.59 E-value=5e-16 Score=135.89 Aligned_cols=144 Identities=13% Similarity=0.067 Sum_probs=115.9
Q ss_pred EcCCCCCCCC-CCCCCC----ceecchhhhcCCCCCCeEEEE---cCcHHHHHHHHHHHhCCCeEEEEeecCccCCCCCH
Q 008860 215 ISVGGRPFIP-DIPGSE----YAIDSDAALDLPSKPEKIAIV---GGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDE 286 (551)
Q Consensus 215 iAtG~~p~~p-~i~g~~----~~~~~~~~~~~~~~~~~vvVi---G~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~~~~~ 286 (551)
-|||+.|..| ++||.+ +++++++++..+..+++.+|| |+|++|+|+|..|+++|++||++++.+.+++.+++
T Consensus 3 ~atG~~~~~~~pipG~~~~~~~v~t~~d~l~~~~~~~~~vvi~d~ggg~ig~e~A~~la~~G~~Vtlv~~~~~~~~~~~~ 82 (156)
T d1djqa2 3 NTDGTNCLTHDPIPGADASLPDQLTPEQVMDGKKKIGKRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVHLANYMHFT 82 (156)
T ss_dssp CSSCCCTTTSSCCTTCCTTSTTEECHHHHHHTCSCCCSEEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSCTTTHHHHT
T ss_pred cCCCCCCCCCCCCCCccCCCCEEECHHHHhcCccccCCceEEEecCCChHHHHHHHHHHHcCCeEEEEecCCccccccch
Confidence 3899999887 799975 588999999988776665555 99999999999999999999999999988877888
Q ss_pred HHHHHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCcCCCCCCCCccccCeeecCCCCeEeC
Q 008860 287 DIRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNTKNLGLEKVGVKMTKNGAIEVD 366 (551)
Q Consensus 287 ~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd 366 (551)
.....+.+.|++.||++++++.+.+|+.+. +.+.. .....++.++.++|..|+... .++.++++|. .+.++
T Consensus 83 ~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~---v~l~~--~~~~~~~~v~~~~g~~~~~~~--~~~~~le~D~--vilvt 153 (156)
T d1djqa2 83 LEYPNMMRRLHELHVEELGDHFCSRIEPGR---MEIYN--IWGDGSKRTYRGPGVSPRDAN--TSHRWIEFDS--LVLVT 153 (156)
T ss_dssp TCHHHHHHHHHHTTCEEEETEEEEEEETTE---EEEEE--TTCSCSCCCCCCTTSCSSCCC--CCCEEEECSE--EEEES
T ss_pred hHHHHHHHHHhhccceEEeccEEEEecCcc---eEEEe--eeccccceeeeeeEEEecccC--CccCcEecce--EEEEe
Confidence 888999999999999999999999997432 33333 223446788888899888876 5666666653 45554
Q ss_pred C
Q 008860 367 E 367 (551)
Q Consensus 367 ~ 367 (551)
.
T Consensus 154 g 154 (156)
T d1djqa2 154 G 154 (156)
T ss_dssp C
T ss_pred c
Confidence 3
|
| >d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: HI0933 N-terminal domain-like domain: Flavoprotein BC4706 species: Bacillus cereus [TaxId: 1396]
Probab=99.57 E-value=1.5e-14 Score=136.81 Aligned_cols=117 Identities=22% Similarity=0.281 Sum_probs=81.6
Q ss_pred HHHHHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCcCCCCCCCC--------ccccCeeec
Q 008860 287 DIRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNTKNLG--------LEKVGVKMT 358 (551)
Q Consensus 287 ~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~~~~l~--------l~~~gl~~~ 358 (551)
++.+.+.+.+++.||+++++++|++|..+++....|.+.+|+.+.+|.||+|+|....... + ++..+.++.
T Consensus 111 ~i~~~L~~~~~~~gv~i~~~~~v~~i~~~~~~~~~v~~~~g~~i~a~~vI~AtGg~S~p~~-Gs~g~g~~~a~~~~~~~~ 189 (251)
T d2i0za1 111 SVVDALLTRLKDLGVKIRTNTPVETIEYENGQTKAVILQTGEVLETNHVVIAVGGKSVPQT-GSTGDGYAWAEKAGHTIT 189 (251)
T ss_dssp HHHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEETTCCEEECSCEEECCCCSSSGGG-SCSSHHHHHHHHTTCCEE
T ss_pred HHHHHHHHHHHHcCCcccCCcEEEEEEEECCEEEEEEeCCCCeEecCeEEEccCCcccccc-CCCcccchhcccceeeee
Confidence 4566788888999999999999999998777656688999999999999999997653321 0 233333332
Q ss_pred CC--CCe-----EeCCCCCCCCCcEEEeCcCCCCC-----CChHHHHHhHHHHHHHHc
Q 008860 359 KN--GAI-----EVDEYSGTAVPSIWAVGDVTDRI-----NLTPVALMEGGALAKTLF 404 (551)
Q Consensus 359 ~~--G~i-----~vd~~~~t~~~~vya~GD~~~~~-----~~~~~A~~~g~~aa~~i~ 404 (551)
+. +.+ ..++...+..|++|++|++.... .....|...|++++..+.
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~l~~~~~~gG~~~~~a~~~G~~a~~~~~ 247 (251)
T d2i0za1 190 ELFGGGVSVKEINPKEMSSKFTNGLYFCGEVLDIHGYTGGYNITSALVTGRIAGTTAG 247 (251)
T ss_dssp EEEEEEECGGGEETTTTEESSSBTEEECGGGBSCBCCTTTHHHHHHHHHHHHHHHHHH
T ss_pred eeeecccCccccCchhHHHhcCCCcEeeeeEEEccCCcchHHHHHHHHHHHHHHHHHH
Confidence 10 111 11222235789999999987531 123467889999988764
|
| >d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: HI0933 N-terminal domain-like domain: Hypothetical protein HI0933 species: Haemophilus influenzae [TaxId: 727]
Probab=99.55 E-value=3.9e-14 Score=134.11 Aligned_cols=121 Identities=15% Similarity=0.140 Sum_probs=81.2
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCcccEEEEEcCCc-e-EEEEECCCeEEEeeEEEEecCcCCCCCCC-------CccccCe
Q 008860 285 DEDIRDFVAEQMSLRGIEFHTEESPQAILKSTDG-S-LSVKTNKGTVDGFSHVMFATGRRPNTKNL-------GLEKVGV 355 (551)
Q Consensus 285 ~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~-~-~~V~~~~G~~i~~d~vi~a~G~~p~~~~l-------~l~~~gl 355 (551)
..++.+.+.+.+++.||+++++++|++++..+++ . ..+...+++++.||.||+|+|-.+.+..- -++..++
T Consensus 108 a~~i~~~L~~~~~~~gV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~~~a~~VIiAtGG~S~p~~G~~g~g~~~a~~~~~ 187 (253)
T d2gqfa1 108 AEQIVEMLKSECDKYGAKILLRSEVSQVERIQNDEKVRFVLQVNSTQWQCKNLIVATGGLSMPGLGATPFGYQIAEQFGI 187 (253)
T ss_dssp THHHHHHHHHHHHHHTCEEECSCCEEEEEECCSCSSCCEEEEETTEEEEESEEEECCCCSSCGGGTCCSHHHHHHHHTTC
T ss_pred hhHHHHHHHHHHHHcCCCeecCceEEEEEeecCCceeEEEEecCCEEEEeCEEEEcCCcccccccCCCchHHHHHHhccc
Confidence 3456778888899999999999999999876553 1 22344567789999999999976543310 0122232
Q ss_pred eec-----CCCCeEe---C-CCCCC-CCCcEEEeCcCCCC---C--CChHHHHHhHHHHHHHHcC
Q 008860 356 KMT-----KNGAIEV---D-EYSGT-AVPSIWAVGDVTDR---I--NLTPVALMEGGALAKTLFQ 405 (551)
Q Consensus 356 ~~~-----~~G~i~v---d-~~~~t-~~~~vya~GD~~~~---~--~~~~~A~~~g~~aa~~i~g 405 (551)
.+- ..|++.+ | .+|+. .+|++|.+|.+... . -.-+.|...|.+|++.|..
T Consensus 188 ~i~~~~~~~~ggv~~~~i~~~t~es~~~~gl~~~ge~ldv~g~~gg~n~~~a~~s~~~~~~~~~~ 252 (253)
T d2gqfa1 188 PVIPPRAVTMGGVDTKVISSKTMESNQVSGLYFIGEVLDVTGWLGGYNFQWAWSSAYACALSISR 252 (253)
T ss_dssp CEEEEEEEEEEEECGGGBCTTTCBBSSSTTEEECGGGBSCEECTTTHHHHHHHHHHHHHHHHHHT
T ss_pred cccccccccCCCCcccccCccchhhhcCCCcEEeeeEEEeeeecCCEehhhhHhHHHHHHHHHhc
Confidence 221 1234443 3 24665 68999999977653 1 1235789999999998763
|
| >d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: 2,4-dienoyl-CoA reductase, middle domain species: Escherichia coli [TaxId: 562]
Probab=99.53 E-value=2.1e-16 Score=140.15 Aligned_cols=125 Identities=19% Similarity=0.317 Sum_probs=86.8
Q ss_pred CCCCCccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhhccCC
Q 008860 68 PSHYDFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDESNGF 147 (551)
Q Consensus 68 ~~~~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~ 147 (551)
+....++|+|||||||||+||..|+++|++|+|+|+ ...+||.......+|
T Consensus 39 ~~~~~k~V~IIGaGPAGL~AA~~la~~G~~Vtl~E~---------~~~~GG~l~~~~~~p-------------------- 89 (179)
T d1ps9a3 39 PAVQKKNLAVVGAGPAGLAFAINAAARGHQVTLFDA---------HSEIGGQFNIAKQIP-------------------- 89 (179)
T ss_dssp SCSSCCEEEEECCSHHHHHHHHHHHTTTCEEEEEES---------SSSSCTTHHHHTTST--------------------
T ss_pred CCCCCcEEEEECccHHHHHHHHHHHhhccceEEEec---------cCccCceEEEEEeCc--------------------
Confidence 334468999999999999999999999999999993 567888753211111
Q ss_pred CcccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEeEEEEecCCEEEEcCEEEEeCeEEEcCCCCCCCCCCC
Q 008860 148 GWKYGTEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIEGRGKIVDPHTVDVDGKLYSARHILISVGGRPFIPDIP 227 (551)
Q Consensus 148 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~i~~~~v~v~g~~~~~d~lviAtG~~p~~p~i~ 227 (551)
...++.++ .+++...+++.+|++..++... ......||.+|+|||+.|+.+.+|
T Consensus 90 -------~~~~~~~~-----------~~~~~~~~~~~gV~i~l~~~Vt--------~~~~~~~d~vilAtG~~~~~~~~p 143 (179)
T d1ps9a3 90 -------GKEEFYET-----------LRYYRRMIEVTGVTLKLNHTVT--------ADQLQAFDETILASGIPNRALAQP 143 (179)
T ss_dssp -------TCTTHHHH-----------HHHHHHHHHHHTCEEEESCCCC--------SSSSCCSSEEEECCCEECCTTHHH
T ss_pred -------ccchHHHH-----------HHHHHHhhhcCCeEEEeCCEEc--------ccccccceeEEEeecCCCcccccc
Confidence 11122222 2333445566699988764211 122357999999999988877666
Q ss_pred CCCceecchhhhcCCCCCCeEEEEcCcHHHHHH
Q 008860 228 GSEYAIDSDAALDLPSKPEKIAIVGGGYIALEF 260 (551)
Q Consensus 228 g~~~~~~~~~~~~~~~~~~~vvViG~G~~g~e~ 260 (551)
+.+ .+++++|+|+|..++++
T Consensus 144 g~~-------------~g~~v~vigggd~a~~~ 163 (179)
T d1ps9a3 144 LID-------------SGKTVHLIGGCDVAMEL 163 (179)
T ss_dssp HHT-------------TTCCEEECGGGTCCSSC
T ss_pred hhc-------------cCCEEEEECCcHhhhhc
Confidence 532 37899999999888775
|
| >d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains species: Escherichia coli [TaxId: 562]
Probab=99.51 E-value=2.5e-13 Score=121.73 Aligned_cols=156 Identities=18% Similarity=0.190 Sum_probs=123.5
Q ss_pred eEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCc--cC--------CC----CCHHHHHHHHHHHHhcCcEEEcCcccEEE
Q 008860 247 KIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKK--VL--------RG----FDEDIRDFVAEQMSLRGIEFHTEESPQAI 312 (551)
Q Consensus 247 ~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~--~l--------~~----~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i 312 (551)
.|+|||+|++|+++|..+.+.|.+|.++++... +. +. ..+.+...+.+..++.+++......+..+
T Consensus 3 DViIIGgGpaGl~AAi~aar~G~~v~iie~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (184)
T d1fl2a1 3 DVLIVGSGPAGAAAAIYSARKGIRTGLMGERFGGQILDTVDIENYISVPKTEGQKLAGALKVHVDEYDVDVIDSQSASKL 82 (184)
T ss_dssp EEEEECCSHHHHHHHHHHHTTTCCEEEECSSTTGGGGGCCEECCBTTBSSEEHHHHHHHHHHHHHTSCEEEECSCCEEEE
T ss_pred cEEEECcCHHHHHHHHHHHHcCCeEEEEEEecCCcccccccceeccccchhhhHHHHHHHHHHhhheeceeeccceeeee
Confidence 589999999999999999999999999986421 10 11 23566677778888889999998888887
Q ss_pred EEcCCc--eEEEEECCCeEEEeeEEEEecCcCCCCCCCCccccCeeecCCCCeEeCCCCCCCCCcEEEeCcCCCCC-CCh
Q 008860 313 LKSTDG--SLSVKTNKGTVDGFSHVMFATGRRPNTKNLGLEKVGVKMTKNGAIEVDEYSGTAVPSIWAVGDVTDRI-NLT 389 (551)
Q Consensus 313 ~~~~~~--~~~V~~~~G~~i~~d~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~t~~~~vya~GD~~~~~-~~~ 389 (551)
...... .......+.+++.++.++.++|..++... ....++.....|.|.||+..+|+.|+||++|||...+ +..
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~--~~~~~~~~~~~g~i~v~~~~~t~~~gv~a~gd~~~~~~~~~ 160 (184)
T d1fl2a1 83 IPAAVEGGLHQIETASGAVLKARSIIVATGAKLPNTN--WLEGAVERNRMGEIIIDAKCETNVKGVFAAGDCTTVPYKQI 160 (184)
T ss_dssp ECCSSTTCCEEEEETTSCEEEEEEEEECCCEEEESCG--GGTTTSCBCTTSCBCCCTTCBCSSTTEEECSTTBSCSSCCH
T ss_pred cccccccceeeeeeecceeeecccccccccccccccc--cccccccccccceeccCCceeeeCCCEEEEeeecCcccCCc
Confidence 654332 24455667778999999999998776654 4455677778899999999999999999999999865 667
Q ss_pred HHHHHhHHHHHHHHc
Q 008860 390 PVALMEGGALAKTLF 404 (551)
Q Consensus 390 ~~A~~~g~~aa~~i~ 404 (551)
..|..+|..+|.++.
T Consensus 161 vva~g~G~~aA~~~~ 175 (184)
T d1fl2a1 161 IIATGEGAKASLSAF 175 (184)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred EEEEECcHHHHHHHH
Confidence 888899988887654
|
| >d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Flavocytochrome c3 (respiratory fumarate reductase) species: Shewanella putrefaciens [TaxId: 24]
Probab=99.42 E-value=3.5e-12 Score=124.91 Aligned_cols=119 Identities=18% Similarity=0.233 Sum_probs=75.1
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCcccEEEEEcCCc-eEEEEE--CCCe--EEEeeEEEEecCcCCCCC-----------C-
Q 008860 285 DEDIRDFVAEQMSLRGIEFHTEESPQAILKSTDG-SLSVKT--NKGT--VDGFSHVMFATGRRPNTK-----------N- 347 (551)
Q Consensus 285 ~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~-~~~V~~--~~G~--~i~~d~vi~a~G~~p~~~-----------~- 347 (551)
...+.+.+.+.+.++|++++++++++++..++++ +..|.. .+++ .+.++.||+|+|-..... .
T Consensus 151 ~~~~~~~l~~~a~~~gv~i~~~t~v~~li~d~~G~V~Gv~~~~~~~~~~~i~Ak~VIlAtGG~~~n~~~~~~~~~~~~~~ 230 (322)
T d1d4ca2 151 GAHVAQVLWDNAVKRGTDIRLNSRVVRILEDASGKVTGVLVKGEYTGYYVIKADAVVIAAGGFAKNNERVSKYDPKLKGF 230 (322)
T ss_dssp HHHHHHHHHHHHHHTTCEEETTEEEEEEECCSSSCCCEEEEEETTTEEEEEECSEEEECCCCCTTCHHHHHHHCGGGTTC
T ss_pred hHHHHHHHHHHHHhcCceEEEeeecccccccccccccceEEEeecccEEEEeCCeEEEcCCCcccCHHHHHhhCcccccc
Confidence 3455667778888899999999999999876554 344443 3333 589999999998432110 0
Q ss_pred -----------------------CCccccCeeecCCCCeEeCCCCCCCCCcEEEeCcCCCC----CCChHH----HHHhH
Q 008860 348 -----------------------LGLEKVGVKMTKNGAIEVDEYSGTAVPSIWAVGDVTDR----INLTPV----ALMEG 396 (551)
Q Consensus 348 -----------------------l~l~~~gl~~~~~G~i~vd~~~~t~~~~vya~GD~~~~----~~~~~~----A~~~g 396 (551)
.+.+..++.++..+.+ +++..+|.+|++||+|+|++. ..+... +.--|
T Consensus 231 ~~~~~~~~tGdg~~~a~~aGa~~~~~e~~~~~~~~~~~~-~~~~~~~~v~Glya~Ge~~~gvhG~nrlg~~~~~e~~v~g 309 (322)
T d1d4ca2 231 KATNHPGATGDGLDVALQAGAATRDLEMGGLVIDTKAEV-KSEKTGKPITGLYAAGEVTGGVHGANRLGGNAISDIVTYG 309 (322)
T ss_dssp CBCSCTTCSSHHHHHHHHTTBCEECTTCCEECCCTTCEE-EBTTTSSEEEEEEECGGGBCSSSTTSCCTTHHHHHHHHHH
T ss_pred cccCCCCccCHHHHHHHHcCCcceecccceEEecCceEE-EECCCCCEeCceEEchhhcCCccccccchhhHHHHHHHHH
Confidence 0112223333333333 344556789999999999864 233333 44458
Q ss_pred HHHHHHHc
Q 008860 397 GALAKTLF 404 (551)
Q Consensus 397 ~~aa~~i~ 404 (551)
++|+.++.
T Consensus 310 ~~ag~~aa 317 (322)
T d1d4ca2 310 RIAGASAA 317 (322)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88887765
|
| >d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Glycine oxidase ThiO species: Bacillus sp. [TaxId: 1409]
Probab=99.38 E-value=3.5e-12 Score=121.83 Aligned_cols=113 Identities=18% Similarity=0.217 Sum_probs=74.0
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCcCCCCCCCCccccCeeecCCCCeE
Q 008860 285 DEDIRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNTKNLGLEKVGVKMTKNGAIE 364 (551)
Q Consensus 285 ~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~ 364 (551)
+..+...+.+.+++.|++++.+++|++|+.+++. +.|++.+| ++.||.||+|+|.....- ++..|+... ++...
T Consensus 150 ~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~-~~V~t~~g-~i~a~~vV~AaG~~s~~l---~~~~G~~~~-~~~p~ 223 (276)
T d1ryia1 150 PYFVCKAYVKAAKMLGAEIFEHTPVLHVERDGEA-LFIKTPSG-DVWANHVVVASGVWSGMF---FKQLGLNNA-DGKPY 223 (276)
T ss_dssp HHHHHHHHHHHHHHTTCEEETTCCCCEEECSSSS-EEEEETTE-EEEEEEEEECCGGGTHHH---HHHTTCCCC-SSCCE
T ss_pred cccchhHHHHHHHHcCCEEecceEEEeEEeecce-EEEecCCe-EEEcCEEEECCCccHHHH---HhhcCCCcc-cccce
Confidence 4456778888899999999999999999987665 88999888 599999999999875432 445555432 22222
Q ss_pred eCCCCCCCCCcEE-EeCcCCCCCCChHHHHHhHHHHHHHHcCCCC
Q 008860 365 VDEYSGTAVPSIW-AVGDVTDRINLTPVALMEGGALAKTLFQAEP 408 (551)
Q Consensus 365 vd~~~~t~~~~vy-a~GD~~~~~~~~~~A~~~g~~aa~~i~g~~~ 408 (551)
+..+- ..+++| +.|..-.+..+ +-..|+..+..+.+.+.
T Consensus 224 ~~~~p--~~~~~~~~~g~~~~gi~~---~p~~g~~i~~~~~~~~~ 263 (276)
T d1ryia1 224 IGRHP--EDSRILFAAGHFRNGILL---APATGALISDLIMNKEV 263 (276)
T ss_dssp EEEET--TEEEEEEEECCSSCTTTT---HHHHHHHHHHHHTTCCC
T ss_pred ecccc--CCCCEEECCCCCCCeEEE---CccHHHHHHHHHhcCCC
Confidence 21111 123444 56654333222 33357778888876543
|
| >d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Sarcosine oxidase species: Bacillus sp., strain b0618 [TaxId: 1409]
Probab=99.36 E-value=2.5e-11 Score=116.09 Aligned_cols=113 Identities=15% Similarity=0.172 Sum_probs=75.7
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCcCCCCCCCCccccCeeecCCCCeE
Q 008860 285 DEDIRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNTKNLGLEKVGVKMTKNGAIE 364 (551)
Q Consensus 285 ~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~ 364 (551)
+..+...+.+.++++|++++.+++|++|+.++++ +.|.+++|+ +.||.||+|+|...+.- +...|+......+ .
T Consensus 149 p~~~~~~l~~~a~~~Gv~i~~~~~V~~i~~~~~~-v~V~t~~g~-i~a~~VViAaG~~s~~l---~~~lg~~~~~~~~-~ 222 (281)
T d2gf3a1 149 SENCIRAYRELAEARGAKVLTHTRVEDFDISPDS-VKIETANGS-YTADKLIVSMGAWNSKL---LSKLNLDIPDEHF-I 222 (281)
T ss_dssp HHHHHHHHHHHHHHTTCEEECSCCEEEEEECSSC-EEEEETTEE-EEEEEEEECCGGGHHHH---GGGGTEECCTSCC-E
T ss_pred ccccccccccccccccccccCCcEEEEEEEECCE-EEEEECCcE-EEcCEEEECCCCcchhh---HHhcCCccccccc-e
Confidence 4567788889999999999999999999988877 789998885 99999999999876532 4556666543222 1
Q ss_pred eCCCCCCCCCcE-EEeCcCCCCCCChHHHHHhHHHHHHHHcCCCC
Q 008860 365 VDEYSGTAVPSI-WAVGDVTDRINLTPVALMEGGALAKTLFQAEP 408 (551)
Q Consensus 365 vd~~~~t~~~~v-ya~GD~~~~~~~~~~A~~~g~~aa~~i~g~~~ 408 (551)
+.. +-..+++ .+.|..-.... .+-..|++++..++.+..
T Consensus 223 ~~~--~P~~~~~~~~~g~~g~g~~---~~p~~G~~~~~~~~~~~~ 262 (281)
T d2gf3a1 223 IDL--HPEHSNVVIAAGFSGHGFK---FSSGVGEVLSQLALTGKT 262 (281)
T ss_dssp EEE--ETTEEEEEEEECCTTCCGG---GHHHHHHHHHHHHHHSCC
T ss_pred ecc--ccCCCCEEEEeccCCcccc---cChhHHHHHHHHHhcCCC
Confidence 110 0122444 44453322222 233468888877765543
|
| >d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Fumarate reductase species: Wolinella succinogenes [TaxId: 844]
Probab=99.31 E-value=1.9e-11 Score=120.19 Aligned_cols=119 Identities=13% Similarity=0.150 Sum_probs=80.8
Q ss_pred HHHHHHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEE---CCCe--EEEeeEEEEecCcCCCCCCC-----C------
Q 008860 286 EDIRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKT---NKGT--VDGFSHVMFATGRRPNTKNL-----G------ 349 (551)
Q Consensus 286 ~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~---~~G~--~i~~d~vi~a~G~~p~~~~l-----~------ 349 (551)
..+...+.+..++.|++++.++.+.++..+++++..+.. .+|+ .+.++.||+|||-....... .
T Consensus 158 ~~i~~~l~~~~~~~gv~i~~~~~~~~li~~~~~v~g~~~~~~~~g~~~~i~Ak~VvlATGG~~~~~~~t~~~~~~tGdg~ 237 (336)
T d2bs2a2 158 HTMLFAVANECLKLGVSIQDRKEAIALIHQDGKCYGAVVRDLVTGDIIAYVAKGTLIATGGYGRIYKNTTNAVVCEGTGT 237 (336)
T ss_dssp HHHHHHHHHHHHHHTCEEECSEEEEEEEEETTEEEEEEEEETTTCCEEEEECSEEEECCCCCGGGSSSBSSCTTCSCHHH
T ss_pred HHHHHHHHHHHHhccccccceeeeeecccccccccceeEEeccCCcEEEEecCeEEEeccccccccccccccccccchhh
Confidence 456667778888999999999999998887776444433 4665 47899999999864322110 0
Q ss_pred --ccccC-eeecCCCCeEeCCCCCCCCCcEEEeCcCCCC-----CCC----hHHHHHhHHHHHHHHc
Q 008860 350 --LEKVG-VKMTKNGAIEVDEYSGTAVPSIWAVGDVTDR-----INL----TPVALMEGGALAKTLF 404 (551)
Q Consensus 350 --l~~~g-l~~~~~G~i~vd~~~~t~~~~vya~GD~~~~-----~~~----~~~A~~~g~~aa~~i~ 404 (551)
....| ..+.+-++|.+|++.+|+.|++|++||++.. ..+ ...+...+.++++++.
T Consensus 238 ~~~~~~G~~~l~~~~~iq~~~~~~t~~~gl~a~G~~~~~~~~~~~~~~~~~~~e~~~~~~~~ge~~~ 304 (336)
T d2bs2a2 238 AIALETGIAQLGNMGGIRTDYRGEAKLKGLFSAGEAACWDMHGFNRLGGNSVSEAVVAGMIVGEYFA 304 (336)
T ss_dssp HHHHTTSSSCEECCCEEECCTTSBCSSBTEEECGGGEECCSSTTCCCTTHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhccccceeechhhcccCCcceeccccccccccccccchhhccchhhhhcchhHHHHH
Confidence 11223 2345667899999999999999999998653 122 2234445555555544
|
| >d1chua2 c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: L-aspartate oxidase species: Escherichia coli [TaxId: 562]
Probab=99.26 E-value=2.7e-11 Score=117.55 Aligned_cols=126 Identities=21% Similarity=0.288 Sum_probs=80.3
Q ss_pred HHHHHHhcCcEEEcCcccEEEEEcCC-------ceEEEEE---CCCe--EEEeeEEEEecCcCCCCCCC-----------
Q 008860 292 VAEQMSLRGIEFHTEESPQAILKSTD-------GSLSVKT---NKGT--VDGFSHVMFATGRRPNTKNL----------- 348 (551)
Q Consensus 292 l~~~l~~~Gv~i~~~~~v~~i~~~~~-------~~~~V~~---~~G~--~i~~d~vi~a~G~~p~~~~l----------- 348 (551)
+.+.+++.+++++.++.+.++..+++ .++.+.. .+++ .+.++.||+|+|-.......
T Consensus 144 ~~~~~~~~~v~~~~~~~~~~Li~~~~~~~~~~~rv~Gv~~~~~~~g~~~~~~ak~VilAtGG~~~~~~~~t~~~~~TGDG 223 (305)
T d1chua2 144 VSKALNHPNIRVLERTNAVDLIVSDKIGLPGTRRVVGAWVWNRNKETVETCHAKAVVLATGGASKVYQYTTNPDISSGDG 223 (305)
T ss_dssp HHHHHHCTTEEEECSEEEEEEEEGGGTTCCSSCBEEEEEEEETTTTEEEEEECSEEEECCCCCGGGSSSBSCGGGCSCHH
T ss_pred HHHHHhccCcceeceeEEEEEEEEcCcccccCceEEEEEEEeCCCCcEEEEeecceEEeeeccccceeccCCCCceeccc
Confidence 44566778999999999999887654 2344443 3454 46899999999864322110
Q ss_pred --CccccCeeecCCCCeEeCCCCCCCCCcEEEeCcCCCC-----CCChHH----HHHhHHHHHHHHcCCCCCCCCCCCcc
Q 008860 349 --GLEKVGVKMTKNGAIEVDEYSGTAVPSIWAVGDVTDR-----INLTPV----ALMEGGALAKTLFQAEPTKPDYSAVP 417 (551)
Q Consensus 349 --~l~~~gl~~~~~G~i~vd~~~~t~~~~vya~GD~~~~-----~~~~~~----A~~~g~~aa~~i~g~~~~~~~~~~~~ 417 (551)
-...+|.++..-++|.+|++.+|+.|++||+|+++.. ..+... ....++.+.+++....+...+...+|
T Consensus 224 ~~mA~~aGa~l~~m~~iq~~~~g~t~~~g~~a~G~~~~~~~~G~~~~~~N~~gerfv~~~~~~~d~~~~~~~~~~~~~~p 303 (305)
T d1chua2 224 IAMAWRAGCRVANCGGVMVDDHGRTDVEGLYAIGEVSYTGLHGANRMASNSLLECLVYGWSAAEDITRRMPYAHDISTLP 303 (305)
T ss_dssp HHHHHHTTCCEECSCEEECCTTCBCSSBTEEECGGGEECSSSTTSCCTTHHHHHHHHHHHHHHHHHHHHC---CCCCCBC
T ss_pred EeeccccceeeEecceeEECCcccCCCCCceecccEEEeeecCcCceeEcCCccchhccchhHHHHHHhcccccCcCCCC
Confidence 0235677888888999999999999999999997532 112222 23334556666664433333344444
|
| >d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=99.26 E-value=5.5e-12 Score=122.41 Aligned_cols=104 Identities=12% Similarity=0.095 Sum_probs=66.5
Q ss_pred CcEEEcCcccEEEEEcCCc-----eEEEEE-----CCCeEEEeeEEEEecCcCCCCCCC------CccccCee----ecC
Q 008860 300 GIEFHTEESPQAILKSTDG-----SLSVKT-----NKGTVDGFSHVMFATGRRPNTKNL------GLEKVGVK----MTK 359 (551)
Q Consensus 300 Gv~i~~~~~v~~i~~~~~~-----~~~V~~-----~~G~~i~~d~vi~a~G~~p~~~~l------~l~~~gl~----~~~ 359 (551)
+.+++++++|++|..+.++ ...+.. .+++.+++|.||+|++......+. .+....+. .+.
T Consensus 243 ~~~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~D~Vi~a~p~~~l~~l~~~~~~~~~~~~~~~~~~~~~~ 322 (373)
T d1seza1 243 EDELRLNSRVLELSCSCTEDSAIDSWSIISASPHKRQSEEESFDAVIMTAPLCDVKSMKIAKRGNPFLLNFIPEVYGHNY 322 (373)
T ss_dssp TTTEETTCCEEEEEEECSSSSSSCEEEEEEBCSSSSCBCCCEESEEEECSCHHHHHTSEEESSSSBCCCTTSCCCCCTTH
T ss_pred cceEecCCEEEEEEEeCCcccccccceEEecccCCCCceEEECCEEEECCchHHhhhcccccCCCccchhhhccccccCC
Confidence 7789999999999876543 122322 234578999999998743211100 00000000 001
Q ss_pred CCCeEeCCCCCCCCCcEEEeCcCCCCCCChHHHHHhHHHHHHHHc
Q 008860 360 NGAIEVDEYSGTAVPSIWAVGDVTDRINLTPVALMEGGALAKTLF 404 (551)
Q Consensus 360 ~G~i~vd~~~~t~~~~vya~GD~~~~~~~~~~A~~~g~~aa~~i~ 404 (551)
++.+.+++.++|+.|+||++||+.+++ ....|+.+|+.||+.|+
T Consensus 323 ~~~~~~~~~~~t~~pglf~aGd~~~g~-~~~~A~~~G~~aA~~i~ 366 (373)
T d1seza1 323 DSVLDAIDKMEKNLPGLFYAGNHRGGL-SVGKALSSGCNAADLVI 366 (373)
T ss_dssp HHHHHHHHHHHHHSTTEEECCSSSSCS-SHHHHHHHHHHHHHHHH
T ss_pred CcEeecccccCCCCCCEEEEecCCCch-hHHHHHHHHHHHHHHHH
Confidence 123334556788999999999999865 56789999999999886
|
| >d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Flavocytochrome c3 (respiratory fumarate reductase) species: Shewanella frigidimarina [TaxId: 56812]
Probab=99.26 E-value=6.7e-11 Score=114.75 Aligned_cols=55 Identities=16% Similarity=0.211 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHhcCcEEEcCcccEEEEEcCCc-eEEEEEC--CCe--EEEeeEEEEecCc
Q 008860 287 DIRDFVAEQMSLRGIEFHTEESPQAILKSTDG-SLSVKTN--KGT--VDGFSHVMFATGR 341 (551)
Q Consensus 287 ~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~-~~~V~~~--~G~--~i~~d~vi~a~G~ 341 (551)
.+...+.+.+++.|++++++++++++..++++ +..|... ++. .+.++.||+|||-
T Consensus 146 ~~~~~l~~~a~~~gv~i~~~~~v~~li~~~~G~V~Gv~~~~~~~~~~~i~Ak~VVlAtGG 205 (308)
T d1y0pa2 146 HVVQVLYDNAVKRNIDLRMNTRGIEVLKDDKGTVKGILVKGMYKGYYWVKADAVILATGG 205 (308)
T ss_dssp HHHHHHHHHHHHTTCEEESSEEEEEEEECTTSCEEEEEEEETTTEEEEEECSEEEECCCC
T ss_pred HHHHHHHHHHHhccceEEEeeccchhhhhcccccccccccccccceeEeecCeEEEccCc
Confidence 34566677788899999999999998877654 4455543 333 5889999999995
|
| >d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Polyamine oxidase species: Maize (Zea mays) [TaxId: 4577]
Probab=99.25 E-value=7.5e-12 Score=118.84 Aligned_cols=108 Identities=18% Similarity=0.154 Sum_probs=74.7
Q ss_pred HhcCcEEEcCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCcCCCCCCCCccccCe------eecCCCCeEeC----
Q 008860 297 SLRGIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNTKNLGLEKVGV------KMTKNGAIEVD---- 366 (551)
Q Consensus 297 ~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~~~~l~l~~~gl------~~~~~G~i~vd---- 366 (551)
+..+..+..++.+..+...++. +.|.+.+|+.+++|.+++++........+..-...+ .++..++..++
T Consensus 221 ~~~~~~i~~~~~v~~i~~~~~~-v~v~~~~g~~~~~d~~~~~~~~~~l~~~~~~~~p~l~~~~~~ai~~~~~~~~~~~~~ 299 (347)
T d1b5qa1 221 KIVDPRLQLNKVVREIKYSPGG-VTVKTEDNSVYSADYVMVSASLGVLQSDLIQFKPKLPTWKVRAIYQFWPVGVNRYEY 299 (347)
T ss_dssp CBCCTTEESSCCEEEEEECSSC-EEEEETTSCEEEESEEEECSCHHHHHTTSSEEESCCCHHHHHHHHHSCBTTCCHHHH
T ss_pred hhcccccccccccccccccCcc-EEEEECCCCEEEcCEEEeecCHHHHhhcccccCCCCCHHHHHHHHhcCCccccccch
Confidence 4557789999999999988776 789999999999999999876432111100000000 01222333333
Q ss_pred CCCCCCCCcEEEeCcCCCC--CCChHHHHHhHHHHHHHHcC
Q 008860 367 EYSGTAVPSIWAVGDVTDR--INLTPVALMEGGALAKTLFQ 405 (551)
Q Consensus 367 ~~~~t~~~~vya~GD~~~~--~~~~~~A~~~g~~aa~~i~g 405 (551)
+.++++.++||++||++.. +..++.|+.+|+.+|+.|++
T Consensus 300 ~~~~~~~~~v~~~GD~~~~~~~~~~~gA~~sG~~aA~~l~~ 340 (347)
T d1b5qa1 300 DQLRAPVGRVYFTGEHTSEHYNGYVHGAYLSGIDSAEILIN 340 (347)
T ss_dssp HHHHCCBTTEEECSGGGCSSCTTSHHHHHHHHHHHHHHHHH
T ss_pred hhcccccCCEEEEEccccCcCCCHHHHHHHHHHHHHHHHHH
Confidence 3446788999999999874 56778899999999998864
|
| >d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Myxococcus xanthus [TaxId: 34]
Probab=99.23 E-value=5.2e-12 Score=122.14 Aligned_cols=109 Identities=13% Similarity=0.199 Sum_probs=68.3
Q ss_pred HHHHHHhcCcEEEcCcccEEEEEcCCceEEEEE-CCC--eEEEeeEEEEecCcCCCCCCCCccccCeee-------cCCC
Q 008860 292 VAEQMSLRGIEFHTEESPQAILKSTDGSLSVKT-NKG--TVDGFSHVMFATGRRPNTKNLGLEKVGVKM-------TKNG 361 (551)
Q Consensus 292 l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~-~~G--~~i~~d~vi~a~G~~p~~~~l~l~~~gl~~-------~~~G 361 (551)
+.+..++.|++++++++|++|+.++++ ++|++ .+| ++++||.||+|+|......+| .....+. ...|
T Consensus 225 ~~~l~~~~g~~i~~~~~V~~I~~~~~~-~~v~~~~~~~~~~~~ad~VV~a~p~~~~~~Ll--~~~~~~~~~~~~~~~~~~ 301 (347)
T d2ivda1 225 IDALAASLGDAAHVGARVEGLAREDGG-WRLIIEEHGRRAELSVAQVVLAAPAHATAKLL--RPLDDALAALVAGIYNLG 301 (347)
T ss_dssp HHHHHHHHGGGEESSEEEEEEECC--C-CEEEEEETTEEEEEECSEEEECSCHHHHHHHH--TTTCHHHHHHHHTCCBTT
T ss_pred HHHHHHHhhcccccCCEEEEEEEeCCe-EEEEEEcCCeEEEEECCEEEECCCHHHHHHhc--cCCCHHHHHHhhcceecC
Confidence 444556669999999999999887766 44444 333 368999999999864322221 1110000 0111
Q ss_pred C---eEeCCCCCCCCCcEEEeCcCCCCCCChHHHHHhHHHHHHHHc
Q 008860 362 A---IEVDEYSGTAVPSIWAVGDVTDRINLTPVALMEGGALAKTLF 404 (551)
Q Consensus 362 ~---i~vd~~~~t~~~~vya~GD~~~~~~~~~~A~~~g~~aa~~i~ 404 (551)
. +...+...++.|++|++||...+.. ...|+.+|+.+|+.|.
T Consensus 302 ~~~~~~~~~~~~~~~p~~~~~G~~~~g~~-~~~~~~~g~~~a~~~~ 346 (347)
T d2ivda1 302 HLERVAAIDAALQRLPGLHLIGNAYKGVG-LNDCIRNAAQLADALV 346 (347)
T ss_dssp HHHHHHHHHHHHHTSTTEEECSTTTSCCS-HHHHHHHHHHHHHHHC
T ss_pred cccceecccccccCCCCEEEecccccCCC-HHHHHHHHHHHHHHhh
Confidence 1 1111222357899999999987654 5678999999998875
|
| >d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: 2,4-dienoyl-CoA reductase, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.22 E-value=2.7e-11 Score=105.82 Aligned_cols=118 Identities=25% Similarity=0.294 Sum_probs=89.2
Q ss_pred CCCCCCCCCC--ceecchhhhc-CCCCCCeEEEEcCcHHHHHHHHHHHhCCCe---------------------------
Q 008860 221 PFIPDIPGSE--YAIDSDAALD-LPSKPEKIAIVGGGYIALEFAGIFSGLTSE--------------------------- 270 (551)
Q Consensus 221 p~~p~i~g~~--~~~~~~~~~~-~~~~~~~vvViG~G~~g~e~a~~l~~~g~~--------------------------- 270 (551)
|+.|+|||.+ .+++..+++. ....+++|+|||+|++|+|+|..+.+.|.+
T Consensus 2 Pr~p~IpG~d~~~V~~a~d~L~~~~~~gkrVvVIGgG~~g~d~a~~~~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (162)
T d1ps9a2 2 PRTPPIDGIDHPKVLSYLDVLRDKAPVGNKVAIIGCGGIGFDTAMYLSQPGESTSQNIAGFCNEWGIDSSLQQAGGLSPQ 81 (162)
T ss_dssp ECCCCCBTTTSTTEEEHHHHHTSCCCCCSEEEEECCHHHHHHHHHHHTCCSSCGGGCHHHHHHHTTBCTTCCSGGGBCTT
T ss_pred CCCCCCCCCCCCCeEEHHHHhhCccccCCceEEEcCchhHHHHHHHHHHcCCccceeHhhhhhhccCCcchhhhcccccc
Confidence 7889999975 5788777764 445689999999999999999999998864
Q ss_pred ----------EEEEeecC-ccCCCCCHHHHHHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEECCCe-EEEeeEEEEe
Q 008860 271 ----------VHVFIRQK-KVLRGFDEDIRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTNKGT-VDGFSHVMFA 338 (551)
Q Consensus 271 ----------Vtlv~~~~-~~l~~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~G~-~i~~d~vi~a 338 (551)
++.+.... .+...++..........++..||+++.++.+.+++ +++ +.+...+.+ .++||.||+|
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~i~--~~g-v~~~~~g~e~~i~aD~Vv~A 158 (162)
T d1ps9a2 82 GMQIPRSPRQIVMLQRKASKPGQGLGKTTGWIHRTTLLSRGVKMIPGVSYQKID--DDG-LHVVINGETQVLAVDNVVIC 158 (162)
T ss_dssp CCCCCCCSSEEEEECSSCSCTTTTSCTTTHHHHHHHHHHTTCEEECSCEEEEEE--TTE-EEEEETTEEEEECCSEEEEC
T ss_pred cceeccccceEEEEEeccchhccccchhhhHHHHHHHhhCCeEEEeeeEEEEEc--CCC-CEEecCCeEEEEECCEEEEC
Confidence 33333332 22233566667778889999999999999999986 344 445444333 5899999999
Q ss_pred cCc
Q 008860 339 TGR 341 (551)
Q Consensus 339 ~G~ 341 (551)
+|.
T Consensus 159 ~Gq 161 (162)
T d1ps9a2 159 AGQ 161 (162)
T ss_dssp CCE
T ss_pred CCC
Confidence 995
|
| >d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Flavocytochrome c3 (respiratory fumarate reductase) species: Shewanella frigidimarina [TaxId: 56812]
Probab=99.21 E-value=1.8e-10 Score=112.15 Aligned_cols=57 Identities=18% Similarity=0.223 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHhcCcEEEcCcccEEEEEcCCc-eEEEEE--CCCe--EEEeeEEEEecCcC
Q 008860 286 EDIRDFVAEQMSLRGIEFHTEESPQAILKSTDG-SLSVKT--NKGT--VDGFSHVMFATGRR 342 (551)
Q Consensus 286 ~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~-~~~V~~--~~G~--~i~~d~vi~a~G~~ 342 (551)
..+...+.+.+++.|+++++++.++++..++++ +..|.. .+++ .+.++.||+|||-.
T Consensus 148 ~~i~~~L~~~~~~~g~~i~~~~~v~~l~~~~~g~V~Gv~~~~~~~~~~~i~Ak~VVlAtGG~ 209 (317)
T d1qo8a2 148 PEIIDTLRKAAKEQGIDTRLNSRVVKLVVNDDHSVVGAVVHGKHTGYYMIGAKSVVLATGGY 209 (317)
T ss_dssp HHHHHHHHHHHHHTTCCEECSEEEEEEEECTTSBEEEEEEEETTTEEEEEEEEEEEECCCCC
T ss_pred hhhhHHHHHHhhhccceeeeccchhheeecccccceeeEeecccceEEEEeccceEEecccc
Confidence 345677888889999999999999998775554 444443 4554 47899999999953
|
| >d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: L-aminoacid oxidase species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]
Probab=99.19 E-value=1.7e-12 Score=127.67 Aligned_cols=109 Identities=11% Similarity=0.043 Sum_probs=67.8
Q ss_pred HHHHHhcCcEEEcCcccEEEEEcCCceEEEEE----CCCeEEEeeEEEEecCcCCCCCCCCccccCee---------e-c
Q 008860 293 AEQMSLRGIEFHTEESPQAILKSTDGSLSVKT----NKGTVDGFSHVMFATGRRPNTKNLGLEKVGVK---------M-T 358 (551)
Q Consensus 293 ~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~----~~G~~i~~d~vi~a~G~~p~~~~l~l~~~gl~---------~-~ 358 (551)
...+++.|++++++++|++|+.++++ +.|.. .++++++||.||+|++...... +... ..+. + .
T Consensus 242 ~~l~~~~g~~i~~~~~V~~I~~~~~~-v~v~~~~~~~~~~~~~aD~VI~A~p~~~l~~-i~~~-p~l~~~~~~ai~~~~~ 318 (370)
T d2iida1 242 TAMYRDIQDKVHFNAQVIKIQQNDQK-VTVVYETLSKETPSVTADYVIVCTTSRAVRL-IKFN-PPLLPKKAHALRSVFT 318 (370)
T ss_dssp HHHHHHTGGGEESSCEEEEEEECSSC-EEEEEECSSSCCCEEEESEEEECSCHHHHTT-SEEE-SCCCHHHHHHHHHCCC
T ss_pred HHHHHhcCCccccCceEEEEEEeCCe-EEEEEEecCCCeEEEEeeEEEecCCHHHHhh-CccC-CCCCHHHHHHHHhcCC
Confidence 34456789999999999999998877 55543 3345899999999986432111 0000 0000 0 0
Q ss_pred CCCCeEeCCCCCCCCCcEEEeCcCCCCCC-ChHHHHHhHHHHHHHHc
Q 008860 359 KNGAIEVDEYSGTAVPSIWAVGDVTDRIN-LTPVALMEGGALAKTLF 404 (551)
Q Consensus 359 ~~G~i~vd~~~~t~~~~vya~GD~~~~~~-~~~~A~~~g~~aa~~i~ 404 (551)
+......++.+.+...+||++||++..+. ....|+.+|..||.+|-
T Consensus 319 ~~~~~~~~~~~~~~~g~v~~aGd~~~~~~~~~~~a~~sG~~aA~~i~ 365 (370)
T d2iida1 319 PYQFQHFSDPLTASQGRIYFAGEYTAQAHGWIDSTIKSGLRAARDVN 365 (370)
T ss_dssp TTHHHHHHHHHHCCBTTEEECSGGGSSSSSCHHHHHHHHHHHHHHHH
T ss_pred cccccccchhhhcccCCEEEecccccCCCcccHHHHHHHHHHHHHHH
Confidence 00011111223334567999999887653 45679999999998873
|
| >d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Monoamine oxidase B species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.18 E-value=5.5e-12 Score=124.92 Aligned_cols=112 Identities=16% Similarity=0.101 Sum_probs=73.3
Q ss_pred HHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCcCCCCCCCCccccCee---------ecCC
Q 008860 290 DFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNTKNLGLEKVGVK---------MTKN 360 (551)
Q Consensus 290 ~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~~~~l~l~~~gl~---------~~~~ 360 (551)
....+.+++.|++++++++|++|..++++ +.|++.||+++++|.||+|++..--.... +. ..+. ....
T Consensus 211 ~~~~~l~~~~g~~i~~~~~v~~I~~~~~~-v~v~~~~g~~~~ad~vI~a~p~~~~~~~~-~~-p~l~~~~~~~~~~~~~~ 287 (383)
T d2v5za1 211 QVSERIMDLLGDRVKLERPVIYIDQTREN-VLVETLNHEMYEAKYVISAIPPTLGMKIH-FN-PPLPMMRNQMITRVFPP 287 (383)
T ss_dssp HHHHHHHHHHGGGEEESCCEEEEECSSSS-EEEEETTSCEEEESEEEECSCGGGGGGSE-EE-SCCCHHHHHHTTSCCCT
T ss_pred HHHHHHHHHcCCeEEecCcceEEEecCCe-EEEEECCCCEEECCEEEECCCHHHHhhCc-cC-CCCCHHHHHHHHHhccC
Confidence 34455567789999999999999988777 78999999999999999998642211110 00 0000 0011
Q ss_pred CC-eEeCCCCCCCCCcEEEeCcCCCC--CCChHHHHHhHHHHHHHHc
Q 008860 361 GA-IEVDEYSGTAVPSIWAVGDVTDR--INLTPVALMEGGALAKTLF 404 (551)
Q Consensus 361 G~-i~vd~~~~t~~~~vya~GD~~~~--~~~~~~A~~~g~~aa~~i~ 404 (551)
+. -.....+.....+|+.+|+.... ......|+.+|+.+|..++
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~G~~~~~~~~g~~~ga~~~g~~~a~~i~ 334 (383)
T d2v5za1 288 GILTQYGRVLRQPVDRIYFAGTETATHWSGYMEGAVEAGERAAREIL 334 (383)
T ss_dssp THHHHHGGGTTCCBTTEEECSGGGCSSSTTSHHHHHHHHHHHHHHHH
T ss_pred CccchhhhhhcCCcCceEeccccccccCCcchHHHHHHHHHHHHHHH
Confidence 11 11222334456779999976653 4556678999999888764
|
| >d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: N,N-dimethylglycine oxidase species: Arthrobacter globiformis [TaxId: 1665]
Probab=99.10 E-value=2.6e-10 Score=110.25 Aligned_cols=59 Identities=15% Similarity=0.155 Sum_probs=50.9
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCcCCC
Q 008860 285 DEDIRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPN 344 (551)
Q Consensus 285 ~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~ 344 (551)
+..+...+.+.+++.|++++.+++|+++..++++...|.+++| +++||.||+|+|....
T Consensus 147 p~~l~~~l~~~a~~~gv~i~~~~~V~~i~~~~~~v~~V~T~~g-~i~a~~VV~aaG~~s~ 205 (305)
T d1pj5a2 147 AARAVQLLIKRTESAGVTYRGSTTVTGIEQSGGRVTGVQTADG-VIPADIVVSCAGFWGA 205 (305)
T ss_dssp HHHHHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEETTE-EEECSEEEECCGGGHH
T ss_pred hhhhhhhHHhhhhcccccccCCceEEEEEEeCCEEEEEeccce-eEECCEEEEecchhHH
Confidence 4567788888899999999999999999998887566888887 5999999999998754
|
| >d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Plasmodium falciparum [TaxId: 5833]
Probab=99.08 E-value=2.1e-10 Score=108.33 Aligned_cols=184 Identities=20% Similarity=0.270 Sum_probs=101.3
Q ss_pred eEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccC-----------------------------------CCCC------
Q 008860 247 KIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVL-----------------------------------RGFD------ 285 (551)
Q Consensus 247 ~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l-----------------------------------~~~~------ 285 (551)
.++|||+|+.|+.+|..++++|.+|.++++.. +- ..++
T Consensus 3 DviVIG~G~aG~~aA~~aa~~G~~V~liE~~~-~GGtc~n~gciPsK~l~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~ 81 (259)
T d1onfa1 3 DLIVIGGGSGGMAAARRAARHNAKVALVEKSR-LGGTCVNVGCVPKKIMFNAASVHDILENSRHYGFDTKFSFNLPLLVE 81 (259)
T ss_dssp SEEEECCSHHHHHHHHHHHHTTCCEEEEESSS-TTHHHHHTSHHHHHHHHHHHHHHHHHHHGGGGTCCCCCCCCHHHHHH
T ss_pred eEEEECCCHHHHHHHHHHHHCCCeEEEEecCC-CCCeEEeeCCcchHHHHhhhhcccchhccccccccchhhhhhhhHHh
Confidence 37999999999999999999999999999743 10 0011
Q ss_pred ------HHHHHHHHHHHHhcCcEEEcCcc-cEE---EE--EcCCc-eEEEEECCCeEEEeeEEEEecCcCC-----CCCC
Q 008860 286 ------EDIRDFVAEQMSLRGIEFHTEES-PQA---IL--KSTDG-SLSVKTNKGTVDGFSHVMFATGRRP-----NTKN 347 (551)
Q Consensus 286 ------~~~~~~l~~~l~~~Gv~i~~~~~-v~~---i~--~~~~~-~~~V~~~~G~~i~~d~vi~a~G~~p-----~~~~ 347 (551)
..+.+.+.+.+++.||+++.+.. +.+ +. ...+. .......+++++.+|.|++|||.+| +.+.
T Consensus 82 ~~~~~i~~~~~~~~~~l~~~gV~vi~G~a~f~~~~~v~v~~~~~~~~~~~~~~~~~~i~a~~iiIATGs~P~~~~~~~~~ 161 (259)
T d1onfa1 82 RRDKYIQRLNNIYRQNLSKDKVDLYEGTASFLSENRILIKGTKDNNNKDNGPLNEEILEGRNILIAVGNKPVGRSPDTEN 161 (259)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEEEESCCCCC--------------------------CBSSEEECCCCCBCCBCCTTTT
T ss_pred hhheeeeccccchhhhcccccceEEeeecccccccccccccceeccccccCccceEEEeeeeEEEecCCCCccccccccc
Confidence 11122245667888999987632 111 11 11110 0001112345699999999999999 5666
Q ss_pred CCccccCeeecCCCCeEeCCCCCCCCCcEEEeCcCCCCCCChHHHHHhHHHHHHHHcCCCCCCCCCCCccEEEecCCceE
Q 008860 348 LGLEKVGVKMTKNGAIEVDEYSGTAVPSIWAVGDVTDRINLTPVALMEGGALAKTLFQAEPTKPDYSAVPSAVFSQPPIG 427 (551)
Q Consensus 348 l~l~~~gl~~~~~G~i~vd~~~~t~~~~vya~GD~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~~~~~~~~~~~~ 427 (551)
++++..++..+ ++++.+|+..+|++.++|++||++........+..+...+.. ...........+..+++.+++.
T Consensus 162 ~~l~~~~i~ts-~~~~~~d~~~~t~Vig~gaiGdv~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~ 236 (259)
T d1onfa1 162 LKLEKLNVETN-NNYIVVDENQRTSVNNIYAVGDCCMVKKSKEIEDLNLLKLYN----EERYLNKKENVTEDIFYNVQLT 236 (259)
T ss_dssp SSCTTTTCCBS-SSCEEECTTCBCSSSSEEECSTTEEEC----------------------------------CBCCCCH
T ss_pred cccccceeeec-ccccccccCCceeEeeEEEEEEeeehhhhhhhcchhhHhhhc----CCccccccCCcceEEecCcEEE
Confidence 66777777654 578999999999999999999998754333322222222111 1111223445566777777777
Q ss_pred EeeCCHHHH
Q 008860 428 QVGLSEEQA 436 (551)
Q Consensus 428 ~vGl~~~~a 436 (551)
.++.++.+.
T Consensus 237 ~V~~~~G~~ 245 (259)
T d1onfa1 237 PVAINAGRL 245 (259)
T ss_dssp HHHHHHHHH
T ss_pred EEEccccee
Confidence 666655443
|
| >d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavin-dependent monoxygenase SPBP16F5.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Probab=99.08 E-value=3.5e-10 Score=111.01 Aligned_cols=119 Identities=18% Similarity=0.135 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEECCC---e---EEEeeEEEEecCcC--CCCCCCC--------
Q 008860 286 EDIRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTNKG---T---VDGFSHVMFATGRR--PNTKNLG-------- 349 (551)
Q Consensus 286 ~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~G---~---~i~~d~vi~a~G~~--p~~~~l~-------- 349 (551)
+++.+.+....+..+..++++++|++|+.++++ ..|++.++ + ...+|.||+|+|.. |+...+.
T Consensus 113 ~~~~~yl~~~~~~~~~~I~~~t~V~~v~~~~~~-w~Vt~~~~~~~~~~~~~~~d~VI~AtG~~s~p~~~~~~~~~~p~~~ 191 (335)
T d2gv8a1 113 HTIQEYQRIYAQPLLPFIKLATDVLDIEKKDGS-WVVTYKGTKAGSPISKDIFDAVSICNGHYEVPYTGYLYSVPFPSLA 191 (335)
T ss_dssp HHHHHHHHHHHGGGGGGEECSEEEEEEEEETTE-EEEEEEESSTTCCEEEEEESEEEECCCSSSSBCCCBCCCCCCHHHH
T ss_pred HHHHHHHHHHHHHhhhcccCceEEEEEEecCCE-EEEEEEecCCCCeEEEEEeeEEEEcccccccceecccccCCCCcch
Confidence 355666777777778899999999999988765 66665432 2 45699999999974 3322110
Q ss_pred -ccccCeeecCCCCeEeCCCC---CCCCCcEEEeCcCCCCCCChHHHHHhHHHHHHHHcCC
Q 008860 350 -LEKVGVKMTKNGAIEVDEYS---GTAVPSIWAVGDVTDRINLTPVALMEGGALAKTLFQA 406 (551)
Q Consensus 350 -l~~~gl~~~~~G~i~vd~~~---~t~~~~vya~GD~~~~~~~~~~A~~~g~~aa~~i~g~ 406 (551)
++.....+-.+|.-..+-+. ....|.+..+|=.....+ ......|+..++.-+.|.
T Consensus 192 ~f~~~~~~~~~~~~~~~~ly~~~~~~~~p~l~f~G~~~~v~~-~~~~e~Qa~~~a~~~~g~ 251 (335)
T d2gv8a1 192 KLKSPETKLIDDGSHVHNVYQHIFYIPDPTLAFVGLALHVVP-FPTSQAQAAFLARVWSGR 251 (335)
T ss_dssp SCCSTTTCCCSSSSSCCSEETTTEETTCTTEEESSCCBSSCH-HHHHHHHHHHHHHHHTTS
T ss_pred hcccCccceeccccceeeeecccccCCCCceEEeeeEEEEec-CCchHHHHHHHHHHHcCC
Confidence 01111111111111111111 235688888885554333 345678888888888774
|
| >d1trba2 c.3.1.5 (A:119-244) Thioredoxin reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Escherichia coli [TaxId: 562]
Probab=99.07 E-value=7.9e-10 Score=91.49 Aligned_cols=105 Identities=22% Similarity=0.299 Sum_probs=85.4
Q ss_pred ceecchhhhcCCCCCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCCCCCHHHHHHHHHHHHhcCcEEEcCcccE
Q 008860 231 YAIDSDAALDLPSKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRDFVAEQMSLRGIEFHTEESPQ 310 (551)
Q Consensus 231 ~~~~~~~~~~~~~~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~~~~~v~ 310 (551)
++.++|..+. .+++|+|||+|.+|+|.|..|.+.+.+|++++|++.+. .++.+.+.+.+..+..++.++.++.+.
T Consensus 16 yca~cD~~~~---~~k~V~VvGgGdsA~e~A~~L~~~a~~V~li~r~~~~~--~~~~~~~~~~~~~~~~~i~~~~~~~v~ 90 (126)
T d1trba2 16 ACATSDGFFY---RNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFR--AEKILIKRLMDKVENGNIILHTNRTLE 90 (126)
T ss_dssp SCHHHHGGGG---TTSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSCC--CCHHHHHHHHHHHHTSSEEEECSCEEE
T ss_pred EEEecchHHh---CCCEEEEECCCHHHHHHHHHHhhcCCcEEEEeeccccc--chhHHHHHHHHhhcccceeEecceEEE
Confidence 3445555442 36899999999999999999999999999999998753 477778888888888999999999999
Q ss_pred EEEEcCCceEEEEECCC------eEEEeeEEEEecC
Q 008860 311 AILKSTDGSLSVKTNKG------TVDGFSHVMFATG 340 (551)
Q Consensus 311 ~i~~~~~~~~~V~~~~G------~~i~~d~vi~a~G 340 (551)
++..++.+...|++.|. +++++|.|++++|
T Consensus 91 ~i~G~~~~v~~v~l~~~~~~e~~~~l~~dgvFv~iG 126 (126)
T d1trba2 91 EVTGDQMGVTGVRLRDTQNSDNIESLDVAGLFVAIG 126 (126)
T ss_dssp EEEECSSSEEEEEEECCTTCCCCEEEECSEEEECSC
T ss_pred EEECCCCceEEEEEEECCCCceEEEEECCEEEEEeC
Confidence 99998765455666442 3689999999987
|
| >d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Phenylacetone monooxygenase species: Thermobifida fusca [TaxId: 2021]
Probab=99.05 E-value=3.2e-11 Score=116.12 Aligned_cols=42 Identities=33% Similarity=0.515 Sum_probs=38.5
Q ss_pred CCccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCeec
Q 008860 71 YDFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCV 121 (551)
Q Consensus 71 ~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~~ 121 (551)
.++||+|||||++||++|++|++.|.+|+|+|+ ...+||+|.
T Consensus 6 ~~~dV~IIGAG~sGl~~a~~L~~~G~~v~i~Ek---------~~~iGGtW~ 47 (298)
T d1w4xa1 6 EEVDVLVVGAGFSGLYALYRLRELGRSVHVIET---------AGDVGGVWY 47 (298)
T ss_dssp SEEEEEEECCSHHHHHHHHHHHHTTCCEEEECS---------SSSSCTHHH
T ss_pred CCCCEEEECccHHHHHHHHHHHhCCCCEEEEEc---------CCCcccccc
Confidence 368999999999999999999999999999994 677999985
|
| >d2cula1 c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: GidA-like domain: GidA-related protein TTHA1897 species: Thermus thermophilus [TaxId: 274]
Probab=99.02 E-value=3e-10 Score=103.22 Aligned_cols=114 Identities=15% Similarity=0.206 Sum_probs=68.0
Q ss_pred CccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCeeccCC-CcchHHHHHhhhhhhHhhhccCCCcc
Q 008860 72 DFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRG-CVPKKLLVYASKFSHEFDESNGFGWK 150 (551)
Q Consensus 72 ~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~~~~g-~~p~~~l~~~~~~~~~~~~~~~~g~~ 150 (551)
.|||||||||+||+.||++++|.|.+++||++ ..+.+|+++.|.. ..+.+.++... +
T Consensus 2 ~YDVIVIGgG~AG~eAA~~aAR~G~ktllit~--------~~~~ig~~~cnp~~gg~~kg~l~re-----i--------- 59 (230)
T d2cula1 2 AYQVLIVGAGFSGAETAFWLAQKGVRVGLLTQ--------SLDAVMMPFLPPKPPFPPGSLLERA-----Y--------- 59 (230)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTCCEEEEES--------CGGGTTCCSSCCCSCCCTTCHHHHH-----C---------
T ss_pred CCcEEEECcCHHHHHHHHHHHHCCCcEEEEEe--------ccchhcccccCCccccCCCcceeee-----e---------
Confidence 49999999999999999999999999999993 1234555544321 11111111000 0
Q ss_pred cCCCCCCChHHHHHHHHHHHHHHHHHHHHHH-HhCCeEEEEeEEEEe--cCCEE---EE-cCEEEEeCeEEEcCCCC
Q 008860 151 YGTEPQHDWSTLIANKNAELQRLTGIYKNIL-INAGITLIEGRGKIV--DPHTV---DV-DGKLYSARHILISVGGR 220 (551)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~i--~~~~v---~v-~g~~~~~d~lviAtG~~ 220 (551)
. ........+. ...++.+ ...+++++.+++..+ +...+ .+ ++..+.++.|||+||.-
T Consensus 60 -d-~kG~av~a~r-----------aQ~k~~l~~~~nL~i~q~~V~dli~e~~~v~gV~t~~G~~~~AkaVILtTGTF 123 (230)
T d2cula1 60 -D-PKDERVWAFH-----------ARAKYLLEGLRPLHLFQATATGLLLEGNRVVGVRTWEGPPARGEKVVLAVGSF 123 (230)
T ss_dssp -C-TTCCCHHHHH-----------HHHHHHHHTCTTEEEEECCEEEEEEETTEEEEEEETTSCCEECSEEEECCTTC
T ss_pred -e-ccchhhhhHH-----------HHHHHHHhhhcCHHHHhccceeeEecccceeeEEeccccEEEEeEEEEccCcc
Confidence 0 0000111111 1112222 345899999876654 33433 33 68899999999999965
|
| >d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Dihydropyrimidine dehydrogenase, domain 2 species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.01 E-value=3.8e-10 Score=101.45 Aligned_cols=153 Identities=21% Similarity=0.257 Sum_probs=104.6
Q ss_pred CCCeEEEEcCcHHHHHHHHHHHhCCC-eEEEEeecCccCC---------CCCHHHHHHHHHHHHhcCcEEEcCcccEEEE
Q 008860 244 KPEKIAIVGGGYIALEFAGIFSGLTS-EVHVFIRQKKVLR---------GFDEDIRDFVAEQMSLRGIEFHTEESPQAIL 313 (551)
Q Consensus 244 ~~~~vvViG~G~~g~e~a~~l~~~g~-~Vtlv~~~~~~l~---------~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~ 313 (551)
.++||+|||+|++|+++|..|+++|. +|+++++.+.+.. .................+.++.....+....
T Consensus 3 ~~~kVaIIGaGpaGl~aA~~l~~~G~~~V~v~E~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 82 (196)
T d1gtea4 3 YSAKIALLGAGPASISCASFLARLGYSDITIFEKQEYVGGLSTSEIPQFRLPYDVVNFEIELMKDLGVKIICGKSLSENE 82 (196)
T ss_dssp GGCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSCSTHHHHTSCTTTSCHHHHHHHHHHHHTTTCEEEESCCBSTTS
T ss_pred CCCEEEEECChHHHHHHHHHHHHCCCCeEEEEEecCcccchhhhhccccccccccccchhhhhhccceeEEeeEEeccce
Confidence 47899999999999999999999998 5999999987632 1344445555566667778887776553211
Q ss_pred EcCCceEEEEECCCeEEEeeEEEEecCcCCCCCCCC--ccccCeeecCCCCeEeC-CCCCCCCCcEEEeCcCCCCCCChH
Q 008860 314 KSTDGSLSVKTNKGTVDGFSHVMFATGRRPNTKNLG--LEKVGVKMTKNGAIEVD-EYSGTAVPSIWAVGDVTDRINLTP 390 (551)
Q Consensus 314 ~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~~~~l~--l~~~gl~~~~~G~i~vd-~~~~t~~~~vya~GD~~~~~~~~~ 390 (551)
....+.....++.+++++|..+...... ...........+....+ ..++|+.+.+|++||+++....+.
T Consensus 83 --------~~~~~~~~~~~~~~~ia~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~vigg~~~av 154 (196)
T d1gtea4 83 --------ITLNTLKEEGYKAAFIGIGLPEVLRDPKVKEALSPIKFNRWDLPEVDPETMQTSEPWVFAGGDIVGMANTTV 154 (196)
T ss_dssp --------BCHHHHHHTTCCEEEECCCCCEECCCHHHHHHTTTSCBCTTSSBCCCTTTCBCSSTTEEECSGGGCSCCCHH
T ss_pred --------eeeehhhccccceeeEEeccccCCccccccccccccccccccceeccccccCCCcccccccccccCCcchHH
Confidence 1111122345788899998755443211 11112223334455555 457899999999999999888888
Q ss_pred HHHHhHHHHHHHHc
Q 008860 391 VALMEGGALAKTLF 404 (551)
Q Consensus 391 ~A~~~g~~aa~~i~ 404 (551)
.|..+|+.++..+.
T Consensus 155 ~a~~~g~~~a~~v~ 168 (196)
T d1gtea4 155 ESVNDGKQASWYIH 168 (196)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHhhhehhHh
Confidence 88888888887653
|
| >d1fl2a2 c.3.1.5 (A:326-451) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains species: Escherichia coli [TaxId: 562]
Probab=98.96 E-value=3.3e-09 Score=87.62 Aligned_cols=92 Identities=14% Similarity=0.301 Sum_probs=72.6
Q ss_pred CCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCCCCCHHHHHHHHHHHH-hcCcEEEcCcccEEEEEcCCceEEE
Q 008860 244 KPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRDFVAEQMS-LRGIEFHTEESPQAILKSTDGSLSV 322 (551)
Q Consensus 244 ~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~-~~Gv~i~~~~~v~~i~~~~~~~~~V 322 (551)
.+|+|+|||+|.+|+|.|..|.+...+|++++|++.+.. ++ .+.+.++ ..+|++++++++.++..+++....+
T Consensus 29 ~gk~V~VvGgG~sA~~~A~~L~~~a~~V~li~r~~~~~~--~~----~~~~~~~~~~~I~v~~~~~v~~i~G~~~~v~~v 102 (126)
T d1fl2a2 29 KGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEMKA--DQ----VLQDKLRSLKNVDIILNAQTTEVKGDGSKVVGL 102 (126)
T ss_dssp BTCEEEEECCSHHHHHHHHHHHTTBSEEEEECSSSSCCS--CH----HHHHHHHTCTTEEEESSEEEEEEEESSSSEEEE
T ss_pred CCceEEEEeCCHHHHHHHHhhhccCCceEEEeccccccc--cc----ccccccccccceeEEcCcceEEEEccccceeeE
Confidence 368999999999999999999999999999999887532 33 2333344 4579999999999999876664556
Q ss_pred EEC---CCe--EEEeeEEEEecCc
Q 008860 323 KTN---KGT--VDGFSHVMFATGR 341 (551)
Q Consensus 323 ~~~---~G~--~i~~d~vi~a~G~ 341 (551)
++. +|+ ++++|.|++++|.
T Consensus 103 ~l~~~~tge~~~l~vdgvFv~IGl 126 (126)
T d1fl2a2 103 EYRDRVSGDIHNIELAGIFVQIGL 126 (126)
T ss_dssp EEEETTTCCEEEEECSEEEECSCE
T ss_pred EEEECCCCCEEEEECCEEEEEeCC
Confidence 653 343 6899999999984
|
| >d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Escherichia coli [TaxId: 562]
Probab=98.95 E-value=1.3e-09 Score=97.45 Aligned_cols=110 Identities=17% Similarity=0.173 Sum_probs=71.5
Q ss_pred CCccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhhccCCCcc
Q 008860 71 YDFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDESNGFGWK 150 (551)
Q Consensus 71 ~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~ 150 (551)
+++||+||||||+|++||+.|++.|++|+||| +...||.|.+...+. ++..+
T Consensus 4 k~~dVvIIGGGpaGl~AA~~~ar~g~~v~iie----------~~~~~g~~~~~~~i~---------------~~~~~--- 55 (190)
T d1trba1 4 KHSKLLILGSGPAGYTAAVYAARANLQPVLIT----------GMEKGGQLTTTTEVE---------------NWPGD--- 55 (190)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHTTTCCCEEEC----------CSSTTGGGGGCSBCC---------------CSTTC---
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEE----------eecccccccccchhh---------------hhhcc---
Confidence 46899999999999999999999999999999 556677765432221 11100
Q ss_pred cCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEeEEEEecC----CEEEEcCEEEEeCeEEEcCCCCCC
Q 008860 151 YGTEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIEGRGKIVDP----HTVDVDGKLYSARHILISVGGRPF 222 (551)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~i~~----~~v~v~g~~~~~d~lviAtG~~p~ 222 (551)
........+... ......+.++++..+.+..++. +.+......+..+.+++++|..++
T Consensus 56 ---~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~V~~~~~~~~~~~v~~~~~~~~~~~viva~G~~~~ 117 (190)
T d1trba1 56 ---PNDLTGPLLMER-----------MHEHATKFETEIIFDHINKVDLQNRPFRLNGDNGEYTCDALIIATGASAR 117 (190)
T ss_dssp ---CSSCBHHHHHHH-----------HHHHHHHTTCEEECCCEEEEECSSSSEEEEESSCEEEEEEEEECCCEEEC
T ss_pred ---ccccchHHHHHH-----------HHHHHHhcCcEEecceeEEEecCCCcEEEEEeeeeEeeeeeeeecceeee
Confidence 011122222222 2233455678887776655542 233446678899999999997664
|
| >d1kf6a2 c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Fumarate reductase species: Escherichia coli [TaxId: 562]
Probab=98.93 E-value=1.9e-08 Score=97.12 Aligned_cols=95 Identities=21% Similarity=0.223 Sum_probs=67.9
Q ss_pred HHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEE---ECCCe--EEEeeEEEEecCcCCCCC-----CCC--------cc
Q 008860 290 DFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVK---TNKGT--VDGFSHVMFATGRRPNTK-----NLG--------LE 351 (551)
Q Consensus 290 ~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~---~~~G~--~i~~d~vi~a~G~~p~~~-----~l~--------l~ 351 (551)
..+.+..+..+|+++.++.+.++..+++.+..+. ..+|+ .+.++.||+|||-..... ... ..
T Consensus 139 ~~l~~~~~~~~v~i~~~~~v~~Ll~d~g~v~Gvv~~~~~~g~~~~~~AkaVILATGG~g~~y~~ttn~~~~tGDG~~mA~ 218 (311)
T d1kf6a2 139 TLFQTSLQFPQIQRFDEHFVLDILVDDGHVRGLVAMNMMEGTLVQIRANAVVMATGGAGRVYRYNTNGGIVTGDGMGMAL 218 (311)
T ss_dssp HHHHHHTTCTTEEEEETEEEEEEEEETTEEEEEEEEETTTTEEEEEECSCEEECCCCCGGGSSSBSSCTTCSCHHHHHHH
T ss_pred hHHHHHHccCcceeEeeeEeeeeEecCCcceeEEEEEcCCCcEEEEECCEEEEcCCCccccccccCCCCCcCcHHHHHHH
Confidence 3445556667899999999999988877644443 35676 457899999998532211 000 23
Q ss_pred ccCeeecCCCCeEeCCCCCCCCCcEEEeCcCCC
Q 008860 352 KVGVKMTKNGAIEVDEYSGTAVPSIWAVGDVTD 384 (551)
Q Consensus 352 ~~gl~~~~~G~i~vd~~~~t~~~~vya~GD~~~ 384 (551)
.+|.++.+-.+|.++++..+..+++|+.|++..
T Consensus 219 ~aGa~l~dme~iq~~p~~~~~~~~~~~~~~~~~ 251 (311)
T d1kf6a2 219 SHGVPLRDMGGIETDQNCETRIKGLFAVGECSS 251 (311)
T ss_dssp TTTCCEESCCEEECCTTSBCSSBTEEECGGGEE
T ss_pred hcccceeecccccccccchhcccCCCcCcceee
Confidence 456666566789999999899999999999875
|
| >d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Ferredoxin:NADP reductase FprA species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.93 E-value=2.8e-11 Score=112.65 Aligned_cols=178 Identities=14% Similarity=0.142 Sum_probs=98.3
Q ss_pred ccEEEECCChHHHHHHHHHHhCC-------CcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhhcc
Q 008860 73 FDLFTIGAGSGGVRASRFAANFG-------ASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDESN 145 (551)
Q Consensus 73 ~dVvIIGgG~aGl~aA~~l~~~G-------~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~ 145 (551)
++|+|||||||||+||++|+++| ++|+|+|+ ...+||.+. .++.|...
T Consensus 3 ~~VaVIGaGpaGL~aA~~L~~~G~~~~~~~~~V~v~E~---------~~~~GG~~~-~gi~p~~~--------------- 57 (239)
T d1lqta2 3 YYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEM---------LPTPWGLVR-SGVAPDHP--------------- 57 (239)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEES---------SSSCSTHHH-HTSCTTCT---------------
T ss_pred cEEEEECcCHHHHHHHHHHHHcCCccccCCCceEEEec---------CCCCCCeee-eccCcccc---------------
Confidence 78999999999999999999977 58999994 677899753 23333110
Q ss_pred CCCcccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEeEEEEecCCEEEEcCEEEEeCeEEEcCCCCCCCCC
Q 008860 146 GFGWKYGTEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIEGRGKIVDPHTVDVDGKLYSARHILISVGGRPFIPD 225 (551)
Q Consensus 146 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~i~~~~v~v~g~~~~~d~lviAtG~~p~~p~ 225 (551)
.+.. +.......+...++++..+.. ++. ....+.....||.+++|||+.+..+.
T Consensus 58 ------------~~~~-----------~~~~~~~~~~~~g~~~~~~~~--v~~-~~~~~~~~~~~~~v~~atGa~~~~~~ 111 (239)
T d1lqta2 58 ------------KIKS-----------ISKQFEKTAEDPRFRFFGNVV--VGE-HVQPGELSERYDAVIYAVGAQSRGVP 111 (239)
T ss_dssp ------------GGGG-----------GHHHHHHHHTSTTEEEEESCC--BTT-TBCHHHHHHHSSEEEECCCCCEECCC
T ss_pred ------------cchh-----------hhhhhhhhhccCCceEEEEEE--ecc-ccchhhhhccccceeeecCCCccccc
Confidence 0011 111122344566888877631 111 01111112369999999998876665
Q ss_pred CCCCCce--ecc-h---hhhcCC---------CCCCeEEEEcCcHHHHHHHHHHHh-CCCeEEEEeecCccCCCCCHHHH
Q 008860 226 IPGSEYA--IDS-D---AALDLP---------SKPEKIAIVGGGYIALEFAGIFSG-LTSEVHVFIRQKKVLRGFDEDIR 289 (551)
Q Consensus 226 i~g~~~~--~~~-~---~~~~~~---------~~~~~vvViG~G~~g~e~a~~l~~-~g~~Vtlv~~~~~~l~~~~~~~~ 289 (551)
++|.+.. ... . ...... ...++++|+|+|..+++++..+.. .|... .... .........
T Consensus 112 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~vv~g~g~~a~d~a~~~v~vig~g~----~~~~-~~~~~~~~~ 186 (239)
T d1lqta2 112 TPGLPFDDQSGTIPNVGGRINGSPNEYVVGWIKRGPTGVIGTNKKDAQDTVDTLIKNLGNAK----EGAE-CKSFPEDHA 186 (239)
T ss_dssp CTTSCCBTTTTBCCEETTEETTCSSEEECTHHHHCSCSCTTHHHHHHHHHHHHHHHHHHHHH----HTTC-SCCC--CHH
T ss_pred cccccccccccchhhhhhhhccccccccceeecCCCEEEEeCCCchHHHHHHHHHhhccCCc----cccc-cccccccch
Confidence 5554311 000 0 000000 014577888889999998875432 11100 0000 111222334
Q ss_pred HHHHHHHHhcCcEEEcC
Q 008860 290 DFVAEQMSLRGIEFHTE 306 (551)
Q Consensus 290 ~~l~~~l~~~Gv~i~~~ 306 (551)
....+.+.++++++...
T Consensus 187 ~~~~~~l~~~~v~~v~~ 203 (239)
T d1lqta2 187 DQVADWLAARQPKLVTS 203 (239)
T ss_dssp HHHHHHHHHHCTTCEEH
T ss_pred hHHHHHHHhcCCCccCc
Confidence 55666677777777654
|
| >d1neka2 c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Succinate dehydogenase species: Escherichia coli [TaxId: 562]
Probab=98.85 E-value=3.1e-08 Score=96.48 Aligned_cols=58 Identities=16% Similarity=0.128 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHhcCcEEEcCcccEEEEEcCCc-eEE---EEECCCe--EEEeeEEEEecCcCC
Q 008860 286 EDIRDFVAEQMSLRGIEFHTEESPQAILKSTDG-SLS---VKTNKGT--VDGFSHVMFATGRRP 343 (551)
Q Consensus 286 ~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~-~~~---V~~~~G~--~i~~d~vi~a~G~~p 343 (551)
..+...+.+..++.+++++.++.+.++..++++ .+. +...+|+ .+.++.||+|+|-..
T Consensus 143 ~~i~~~L~~~~~~~~v~~~~~~~~~~l~~~~~~~~~g~~~~~~~~g~~~~~~a~~vIlAtGG~~ 206 (330)
T d1neka2 143 HALLHTLYQQNLKNHTTIFSEWYALDLVKNQDGAVVGCTALCIETGEVVYFKARATVLATGGAG 206 (330)
T ss_dssp HHHHHHHHHHHHHTTCEEECSEEEEEEEECTTSCEEEEEEEETTTCCEEEEEESCEEECCCCCG
T ss_pred HHHHHHHHHHHHhcCCeEEEEEEEEEeeeeccccceeeeeEEccCCcEEEEeccEEEEcCCCcc
Confidence 445666777788899999999998888764443 222 3345665 467999999999643
|
| >d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: GDI-like N domain domain: Guanine nucleotide dissociation inhibitor, GDI species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.84 E-value=1e-09 Score=102.43 Aligned_cols=59 Identities=14% Similarity=0.064 Sum_probs=45.8
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCcccEEEEEcCC-ceEEEEECCCeEEEeeEEEEecCcCC
Q 008860 285 DEDIRDFVAEQMSLRGIEFHTEESPQAILKSTD-GSLSVKTNKGTVDGFSHVMFATGRRP 343 (551)
Q Consensus 285 ~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~-~~~~V~~~~G~~i~~d~vi~a~G~~p 343 (551)
...+.+.+.+.+++.|++|+++++|++|..+++ +.+...+.+|+++.||.||....+-|
T Consensus 235 ~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~v~~v~~~g~~~~ad~VI~~~s~~~ 294 (297)
T d2bcgg1 235 LGELPQGFARLSAIYGGTYMLDTPIDEVLYKKDTGKFEGVKTKLGTFKAPLVIADPTYFP 294 (297)
T ss_dssp TTHHHHHHHHHHHHTTCEEECSCCCCEEEEETTTTEEEEEEETTEEEECSCEEECGGGCG
T ss_pred HHHHHHHHHHHHHhcCCEEEeCCEeeEEEEECCCCEEEEEEcCCEEEECCEEEEChhhcc
Confidence 345788899999999999999999999976543 33554567888999999987544433
|
| >d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: 2,4-dienoyl-CoA reductase, middle domain species: Escherichia coli [TaxId: 562]
Probab=98.84 E-value=1e-08 Score=89.88 Aligned_cols=88 Identities=17% Similarity=0.282 Sum_probs=71.4
Q ss_pred CCCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccC---------CC--CCHHHHHHHHHHHHhcCcEEEcCcccEE
Q 008860 243 SKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVL---------RG--FDEDIRDFVAEQMSLRGIEFHTEESPQA 311 (551)
Q Consensus 243 ~~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l---------~~--~~~~~~~~l~~~l~~~Gv~i~~~~~v~~ 311 (551)
..+|+|+|||+|+.|++.|..|++.|.+|+++++.+.+. +. ...++.+.+.+.+++.||++++|+.|+.
T Consensus 41 ~~~k~V~IIGaGPAGL~AA~~la~~G~~Vtl~E~~~~~GG~l~~~~~~p~~~~~~~~~~~~~~~~~~~gV~i~l~~~Vt~ 120 (179)
T d1ps9a3 41 VQKKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSEIGGQFNIAKQIPGKEEFYETLRYYRRMIEVTGVTLKLNHTVTA 120 (179)
T ss_dssp SSCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSCTTHHHHTTSTTCTTHHHHHHHHHHHHHHHTCEEEESCCCCS
T ss_pred CCCcEEEEECccHHHHHHHHHHHhhccceEEEeccCccCceEEEEEeCcccchHHHHHHHHHHhhhcCCeEEEeCCEEcc
Confidence 457999999999999999999999999999999987552 21 3346677888889999999999987642
Q ss_pred EEEcCCceEEEEECCCeEEEeeEEEEecCcCCCC
Q 008860 312 ILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNT 345 (551)
Q Consensus 312 i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~~ 345 (551)
+. ...+|.||+|+|..|..
T Consensus 121 --------------~~-~~~~d~vilAtG~~~~~ 139 (179)
T d1ps9a3 121 --------------DQ-LQAFDETILASGIPNRA 139 (179)
T ss_dssp --------------SS-SCCSSEEEECCCEECCT
T ss_pred --------------cc-cccceeEEEeecCCCcc
Confidence 11 24679999999998765
|
| >d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Probab=98.83 E-value=2.1e-08 Score=82.11 Aligned_cols=89 Identities=19% Similarity=0.251 Sum_probs=65.3
Q ss_pred ccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhhccCCCcccC
Q 008860 73 FDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDESNGFGWKYG 152 (551)
Q Consensus 73 ~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~~~ 152 (551)
.+++|||||+.|+-+|..|++.|.+|+|||+ ...+ +|.
T Consensus 31 ~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~---------~~~~---------l~~------------------------ 68 (121)
T d1d7ya2 31 SRLLIVGGGVIGLELAATARTAGVHVSLVET---------QPRL---------MSR------------------------ 68 (121)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEES---------SSST---------TTT------------------------
T ss_pred CeEEEECcchhHHHHHHHhhcccceEEEEee---------cccc---------ccc------------------------
Confidence 5799999999999999999999999999992 1110 000
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEeE-EEEecCCEEEE-cCEEEEeCeEEEcCC
Q 008860 153 TEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIEGR-GKIVDPHTVDV-DGKLYSARHILISVG 218 (551)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~i~~~~v~v-~g~~~~~d~lviAtG 218 (551)
.++ + .....+.+.+++.||+++.+. +..+....+.+ +++++.+|.+|+|+|
T Consensus 69 ---~~~-~-----------~~~~~~~~~l~~~GV~i~~~~~v~~~~~~~v~l~dg~~i~~D~vi~a~G 121 (121)
T d1d7ya2 69 ---AAP-A-----------TLADFVARYHAAQGVDLRFERSVTGSVDGVVLLDDGTRIAADMVVVGIG 121 (121)
T ss_dssp ---TSC-H-----------HHHHHHHHHHHTTTCEEEESCCEEEEETTEEEETTSCEEECSEEEECSC
T ss_pred ---cCC-H-----------HHHHHHHHHHHHCCcEEEeCCEEEEEeCCEEEECCCCEEECCEEEEeeC
Confidence 001 1 112233456778899998874 55566777777 889999999999998
|
| >d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO species: Pig (Sus scrofa) [TaxId: 9823]
Probab=98.83 E-value=5.2e-08 Score=96.62 Aligned_cols=116 Identities=21% Similarity=0.266 Sum_probs=68.8
Q ss_pred HHHHHHHHHHHhcCcEEEcCcccEEEEEcCCceEE-EEEC------CC---------eEEEeeEEEEecCcCCCCCCCCc
Q 008860 287 DIRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLS-VKTN------KG---------TVDGFSHVMFATGRRPNTKNLGL 350 (551)
Q Consensus 287 ~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~-V~~~------~G---------~~i~~d~vi~a~G~~p~~~~l~l 350 (551)
.....+.+..++.|+++..+..+.++..++++.+. +... ++ ....++..+++.|.+....---+
T Consensus 142 ~~~~~l~~~Ae~~g~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~G~~G~l~k~li 221 (380)
T d2gmha1 142 HLVSWMGEQAEALGVEVYPGYAAAEILFHEDGSVKGIATNDVGIQKDGAPKTTFERGLELHAKVTIFAEGCHGHLAKQLY 221 (380)
T ss_dssp HHHHHHHHHHHHTTCEEETTCCEEEEEECTTSSEEEEEECCEEECTTSCEEEEEECCCEEECSEEEECCCTTCHHHHHHH
T ss_pred HHHHHHHHHHhhccceeeeecceeeeeeccCCceeecccccccccccccccccccccccccccEEEEeeeCCCcchHHHH
Confidence 34556677788889999999999998876655222 2221 11 13457778888887543310001
Q ss_pred cccCe--eecCCCCeEeCCCCCCCCCcEEEeCcCCCCC-----CChHHHHHhHHHHHHHHc
Q 008860 351 EKVGV--KMTKNGAIEVDEYSGTAVPSIWAVGDVTDRI-----NLTPVALMEGGALAKTLF 404 (551)
Q Consensus 351 ~~~gl--~~~~~G~i~vd~~~~t~~~~vya~GD~~~~~-----~~~~~A~~~g~~aa~~i~ 404 (551)
+...+ .....+++. ..-+...+++..+||+++.. .-.+.|+..|+.||+.+.
T Consensus 222 ~~~~l~~~~~~~~G~~--sip~l~~~G~lLVGDAAG~vnP~~g~GI~~Am~SG~lAAeai~ 280 (380)
T d2gmha1 222 KKFDLRANCEPQGGFQ--SIPKLTFPGGLLIGCSPGFMNVPKIKGTHTAMKSGTLAAESIF 280 (380)
T ss_dssp HHTTTTTTSCCCCGGG--GCCCCEETTEEECTTTTCCCBTTTTBCHHHHHHHHHHHHHHHH
T ss_pred hhhhhccccccccccc--cccccccCCeeEEeccccccchhhcCCeeeeeccHHHHHHHHH
Confidence 11111 111111111 01123468999999999962 446689999999999875
|
| >d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Thi4-like domain: Thiazole biosynthetic enzyme Thi4 species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]
Probab=98.77 E-value=1.2e-08 Score=96.93 Aligned_cols=49 Identities=31% Similarity=0.375 Sum_probs=42.8
Q ss_pred CccEEEECCChHHHHHHHHHHh-CCCcEEEEccCCCCCCCCCCCCCCCeeccCCCcchH
Q 008860 72 DFDLFTIGAGSGGVRASRFAAN-FGASVAICELPFSTISSETTGGVGGTCVLRGCVPKK 129 (551)
Q Consensus 72 ~~dVvIIGgG~aGl~aA~~l~~-~G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~ 129 (551)
++||+|||||++||+||++|++ .|++|+|||+ ...+||.|.+.+|.+++
T Consensus 33 e~DViVIGaGpaGL~aA~~LA~~~G~~V~vlE~---------~~~~GG~~~~~g~~~~~ 82 (278)
T d1rp0a1 33 ETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQ---------SVSPGGGAWLGGQLFSA 82 (278)
T ss_dssp EEEEEEECCSHHHHHHHHHHHTSTTSCEEEEES---------SSSCCTTTTCCSTTCCC
T ss_pred CCCEEEECCCHHHHHHHHHHHHccCCeEEEEec---------CCCCCCceeecCEEcCH
Confidence 6899999999999999999987 5999999993 55789999888886643
|
| >d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains species: Escherichia coli [TaxId: 562]
Probab=98.71 E-value=7.9e-09 Score=91.57 Aligned_cols=30 Identities=23% Similarity=0.571 Sum_probs=29.7
Q ss_pred ccEEEECCChHHHHHHHHHHhCCCcEEEEc
Q 008860 73 FDLFTIGAGSGGVRASRFAANFGASVAICE 102 (551)
Q Consensus 73 ~dVvIIGgG~aGl~aA~~l~~~G~~V~liE 102 (551)
|||+||||||+|+.||+++++.|++|+|||
T Consensus 2 yDViIIGgGpaGl~AAi~aar~G~~v~iie 31 (184)
T d1fl2a1 2 YDVLIVGSGPAGAAAAIYSARKGIRTGLMG 31 (184)
T ss_dssp EEEEEECCSHHHHHHHHHHHTTTCCEEEEC
T ss_pred CcEEEECcCHHHHHHHHHHHHcCCeEEEEE
Confidence 899999999999999999999999999999
|
| >d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.69 E-value=2.5e-08 Score=89.06 Aligned_cols=31 Identities=23% Similarity=0.309 Sum_probs=30.2
Q ss_pred CccEEEECCChHHHHHHHHHHhCCCcEEEEc
Q 008860 72 DFDLFTIGAGSGGVRASRFAANFGASVAICE 102 (551)
Q Consensus 72 ~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE 102 (551)
++||+||||||+|++||+.|+|.|++|+|+|
T Consensus 5 ~~~VvIIGgGpaGl~aA~~~ar~g~~v~vie 35 (192)
T d1vdca1 5 NTRLCIVGSGPAAHTAAIYAARAELKPLLFE 35 (192)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCCEEEC
T ss_pred cceEEEECCCHHHHHHHHHHHHcCCcEEEEE
Confidence 5899999999999999999999999999999
|
| >d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Probab=98.69 E-value=5.2e-08 Score=79.92 Aligned_cols=88 Identities=16% Similarity=0.166 Sum_probs=65.7
Q ss_pred ccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhhccCCCcccC
Q 008860 73 FDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDESNGFGWKYG 152 (551)
Q Consensus 73 ~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~~~ 152 (551)
.+++|||||+.|+-+|..|++.|.+|+|+|+ ...+.
T Consensus 33 ~~vvIiGgG~iG~E~A~~l~~~g~~Vtlv~~---------~~~l~----------------------------------- 68 (122)
T d1xhca2 33 GEAIIIGGGFIGLELAGNLAEAGYHVKLIHR---------GAMFL----------------------------------- 68 (122)
T ss_dssp SEEEEEECSHHHHHHHHHHHHTTCEEEEECS---------SSCCT-----------------------------------
T ss_pred CcEEEECCcHHHHHHHHHhhcccceEEEEec---------ccccc-----------------------------------
Confidence 4799999999999999999999999999992 11110
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEe-EEEEecCCEEEEcCEEEEeCeEEEcCCC
Q 008860 153 TEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIEG-RGKIVDPHTVDVDGKLYSARHILISVGG 219 (551)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~i~~~~v~v~g~~~~~d~lviAtG~ 219 (551)
.++ + .+...+.+.+++.||+++.+ .+..++...+..+++.+.+|.+|+|+|.
T Consensus 69 ---~~d-~-----------~~~~~~~~~l~~~GV~~~~~~~v~~~~~~~v~~~~~~i~~D~vi~a~Gv 121 (122)
T d1xhca2 69 ---GLD-E-----------ELSNMIKDMLEETGVKFFLNSELLEANEEGVLTNSGFIEGKVKICAIGI 121 (122)
T ss_dssp ---TCC-H-----------HHHHHHHHHHHHTTEEEECSCCEEEECSSEEEETTEEEECSCEEEECCE
T ss_pred ---CCC-H-----------HHHHHHHHHHHHCCcEEEeCCEEEEEeCCEEEeCCCEEECCEEEEEEEe
Confidence 011 1 11222345567789999987 4666777777778999999999999993
|
| >d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Phenylacetone monooxygenase species: Thermobifida fusca [TaxId: 2021]
Probab=98.68 E-value=1.2e-07 Score=90.43 Aligned_cols=156 Identities=14% Similarity=0.161 Sum_probs=105.8
Q ss_pred eEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCC---------------------CC----------------CHHHH
Q 008860 247 KIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLR---------------------GF----------------DEDIR 289 (551)
Q Consensus 247 ~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~---------------------~~----------------~~~~~ 289 (551)
+|+|||+|++|+-+|..|++.|.+|+++++.+.+-. .. .+++.
T Consensus 9 dV~IIGAG~sGl~~a~~L~~~G~~v~i~Ek~~~iGGtW~~n~ypg~~~d~~~~~~~~s~~~~~~~~~~~~~~~p~~~e~~ 88 (298)
T d1w4xa1 9 DVLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGGVWYWNRYPGARCDIESIEYCYSFSEEVLQEWNWTERYASQPEIL 88 (298)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHHCCCTTCBCSSCTTTSSCCSCHHHHHHCCCCBSSCBHHHHH
T ss_pred CEEEECccHHHHHHHHHHHhCCCCEEEEEcCCCcccccccCCCCCceeccccccccccccccccCCCCCccccCccchHH
Confidence 699999999999999999999999999998654200 00 13455
Q ss_pred HHHHHHHHhcCc--EEEcCcccEEEEEcCC-ceEEEEECCCeEEEeeEEEEecCcCCCCCCCCccccCeeecCCCCeEeC
Q 008860 290 DFVAEQMSLRGI--EFHTEESPQAILKSTD-GSLSVKTNKGTVDGFSHVMFATGRRPNTKNLGLEKVGVKMTKNGAIEVD 366 (551)
Q Consensus 290 ~~l~~~l~~~Gv--~i~~~~~v~~i~~~~~-~~~~V~~~~G~~i~~d~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd 366 (551)
+.+++..++.++ .|.++++|+++.-+++ +...|++.+++++.+|.||+|+|....... ..-.++++..++++...
T Consensus 89 ~Yl~~~a~~~~L~~~I~f~t~V~~~~~de~~~~W~V~~~~~~~~~~~~~i~atG~ls~~~~--p~~~~~~i~g~~g~~l~ 166 (298)
T d1w4xa1 89 RYINFVADKFDLRSGITFHTTVTAAAFDEATNTWTVDTNHGDRIRARYLIMASGQLSDALT--GALFKIDIRGVGNVALK 166 (298)
T ss_dssp HHHHHHHHHTTGGGGEECSCCEEEEEEETTTTEEEEEETTCCEEEEEEEEECCCSCCCCTT--HHHHTSEEECGGGCBHH
T ss_pred HHHHHHHHHcCCcccccCCcEEEEEEEecCCCceeeccccccccccceEEEeecccccccC--CcccccccccCCCeeeh
Confidence 667777888888 5999999999986443 457899999999999999999997443322 12223443322223222
Q ss_pred C----CCC-------CCCCcEEEeCcCCCC---CCChHHHHHhHHHHHHHHc
Q 008860 367 E----YSG-------TAVPSIWAVGDVTDR---INLTPVALMEGGALAKTLF 404 (551)
Q Consensus 367 ~----~~~-------t~~~~vya~GD~~~~---~~~~~~A~~~g~~aa~~i~ 404 (551)
+ ..+ .+.||.|.++=.... ......+..|++++++.|-
T Consensus 167 ~~W~~~p~ty~G~~v~gfPN~f~~~Gp~s~~~~~~~~~~~e~q~~~i~~~i~ 218 (298)
T d1w4xa1 167 EKWAAGPRTYLGLSTAGFPNLFFIAGPGSPSALSNMLVSIEQHVEWVTDHIA 218 (298)
T ss_dssp HHTTTSCCCBTTTBCTTSTTEEESSCTTSSGGGSCHHHHHHHHHHHHHHHHH
T ss_pred hhchhhHHHHHHHhcCCCCeEEEecCCCCccccccHHHHHHHHHHHHHHHHH
Confidence 1 111 278999997433222 1233446677888877654
|
| >d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Probab=98.66 E-value=5e-08 Score=79.24 Aligned_cols=88 Identities=20% Similarity=0.311 Sum_probs=61.1
Q ss_pred ccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhhccCCCcccC
Q 008860 73 FDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDESNGFGWKYG 152 (551)
Q Consensus 73 ~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~~~ 152 (551)
.+++|||||+.|+.+|..|++.|.+|+|+|+ .+.+ +
T Consensus 22 ~~vvIiGgG~ig~E~A~~l~~~G~~Vtlve~---------~~~~---------l-------------------------- 57 (116)
T d1gesa2 22 ERVAVVGAGYIGVELGGVINGLGAKTHLFEM---------FDAP---------L-------------------------- 57 (116)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECS---------SSSS---------S--------------------------
T ss_pred CEEEEECCChhhHHHHHHhhccccEEEEEee---------cchh---------h--------------------------
Confidence 4799999999999999999999999999992 1111 0
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEeE-EEEec---CC--EEEE-cCEEEEeCeEEEcCC
Q 008860 153 TEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIEGR-GKIVD---PH--TVDV-DGKLYSARHILISVG 218 (551)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~i~---~~--~v~v-~g~~~~~d~lviAtG 218 (551)
+..+. . +...+.+.+++.||+++.+. +..+. .. .+.+ +++++.+|.|++|||
T Consensus 58 --~~~d~-~-----------~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~~~~~v~~~~g~~~~~D~vi~a~G 116 (116)
T d1gesa2 58 --PSFDP-M-----------ISETLVEVMNAEGPQLHTNAIPKAVVKNTDGSLTLELEDGRSETVDCLIWAIG 116 (116)
T ss_dssp --TTSCH-H-----------HHHHHHHHHHHHSCEEECSCCEEEEEECTTSCEEEEETTSCEEEESEEEECSC
T ss_pred --hhcch-h-----------hHHHHHHHHHHCCCEEEeCCEEEEEEEcCCcEEEEEECCCCEEEcCEEEEecC
Confidence 11111 1 22233455666799998874 33332 22 3444 788999999999998
|
| >d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Dihydropyrimidine dehydrogenase, domain 3 species: Pig (Sus scrofa) [TaxId: 9823]
Probab=98.65 E-value=6.5e-08 Score=82.49 Aligned_cols=94 Identities=18% Similarity=0.103 Sum_probs=67.7
Q ss_pred CCCeEEEEcCcHHHHHHHHHHHhCCC-eEEEEeecCccCCCCCHHHHHHHHHHHHhcCcEEEcCcccEEEEEcCCceEEE
Q 008860 244 KPEKIAIVGGGYIALEFAGIFSGLTS-EVHVFIRQKKVLRGFDEDIRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSV 322 (551)
Q Consensus 244 ~~~~vvViG~G~~g~e~a~~l~~~g~-~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V 322 (551)
.+++|+|||||.+|+|+|..+.++|+ .|+++.|.+....... ......+...+++++.+..++++..+++....+
T Consensus 44 ~~~kVvVIGGGdtA~D~A~~a~r~GA~~V~vi~rr~~~~~~a~----~~~~~~a~~~~~~~~~~~~~~ei~~~~~~~~~v 119 (153)
T d1gtea3 44 IRGAVIVLGAGDTAFDCATSALRCGARRVFLVFRKGFVNIRAV----PEEVELAKEEKCEFLPFLSPRKVIVKGGRIVAV 119 (153)
T ss_dssp CCSEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSCGGGCCSC----HHHHHHHHHTTCEEECSEEEEEEEEETTEEEEE
T ss_pred CCCEEEEECCChhHHHHHHHHHHcCCcceeEEEeCChhhhccc----hhheeecccccceeEeccccEEEEecCCceEEE
Confidence 46799999999999999999999986 5889988765332222 222334566789999998888888766542322
Q ss_pred EE------CCC---------eEEEeeEEEEecCc
Q 008860 323 KT------NKG---------TVDGFSHVMFATGR 341 (551)
Q Consensus 323 ~~------~~G---------~~i~~d~vi~a~G~ 341 (551)
.. .+| .+++||.||+|+|.
T Consensus 120 ~~~~~e~d~~G~~~~~~g~e~~i~aD~V~~AiG~ 153 (153)
T d1gtea3 120 QFVRTEQDETGKWNEDEDQIVHLKADVVISAFGS 153 (153)
T ss_dssp EEEEEEECTTSCEEEEEEEEEEEECSEEEECSCE
T ss_pred EEEEeeECCCCCEecCCCCEEEEECCEEEECcCc
Confidence 21 122 25899999999983
|
| >d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]
Probab=98.65 E-value=2.2e-08 Score=88.21 Aligned_cols=109 Identities=17% Similarity=0.242 Sum_probs=66.5
Q ss_pred ccEEEECCChHHHHHHHHHHhCC--CcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhhccCCCcc
Q 008860 73 FDLFTIGAGSGGVRASRFAANFG--ASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDESNGFGWK 150 (551)
Q Consensus 73 ~dVvIIGgG~aGl~aA~~l~~~G--~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~ 150 (551)
.+|||||||++|+.+|.+|++.+ .+|+|||+ ..... .+............ . ..
T Consensus 3 krivIvGgG~~G~e~A~~l~~~~~~~~Vtlie~---------~~~~~------~~~~~~~~~~~~~~------~----~~ 57 (186)
T d1fcda1 3 RKVVVVGGGTGGATAAKYIKLADPSIEVTLIEP---------NTDYY------TCYLSNEVIGGDRK------L----ES 57 (186)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECS---------CSCEE------CSTTHHHHHHTSSC------G----GG
T ss_pred CcEEEECccHHHHHHHHHHHHcCCCCcEEEEEC---------CCccc------cccccccccchhhh------h----hh
Confidence 47999999999999999999966 58999992 11100 01111000000000 0 00
Q ss_pred cCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEeEEEEecC--CEEEE-cCEEEEeCeEEEcCCCCCCCCCCC
Q 008860 151 YGTEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIEGRGKIVDP--HTVDV-DGKLYSARHILISVGGRPFIPDIP 227 (551)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~i~~--~~v~v-~g~~~~~d~lviAtG~~p~~p~i~ 227 (551)
. .. ....+...++.+..+....++. ..+.. +++.+.||++|+|||.+|+.+.++
T Consensus 58 ~----~~-------------------~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~D~li~atG~~~~~~~i~ 114 (186)
T d1fcda1 58 I----KH-------------------GYDGLRAHGIQVVHDSATGIDPDKKLVKTAGGAEFGYDRCVVAPGIELIYDKIE 114 (186)
T ss_dssp G----EE-------------------CSHHHHTTTEEEECCCEEECCTTTTEEEETTSCEEECSEEEECCCEEECCTTST
T ss_pred h----hh-------------------hhhhccccceeEeeeeeEeeeeccceeecccceeeccceEEEEeccccchhhhh
Confidence 0 00 0012334578888776665543 34444 788999999999999999887776
Q ss_pred CC
Q 008860 228 GS 229 (551)
Q Consensus 228 g~ 229 (551)
+.
T Consensus 115 ~~ 116 (186)
T d1fcda1 115 QR 116 (186)
T ss_dssp EE
T ss_pred hh
Confidence 53
|
| >d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=98.65 E-value=3.7e-08 Score=79.92 Aligned_cols=88 Identities=24% Similarity=0.280 Sum_probs=61.7
Q ss_pred ccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhhccCCCcccC
Q 008860 73 FDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDESNGFGWKYG 152 (551)
Q Consensus 73 ~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~~~ 152 (551)
.+++|||||+.|+-+|..|++.|.+|+|+|+ .+.+ +|
T Consensus 22 ~~vvIiGgG~~G~E~A~~l~~~g~~Vtlve~---------~~~i---------l~------------------------- 58 (115)
T d1lvla2 22 QHLVVVGGGYIGLELGIAYRKLGAQVSVVEA---------RERI---------LP------------------------- 58 (115)
T ss_dssp SEEEEECCSHHHHHHHHHHHHHTCEEEEECS---------SSSS---------ST-------------------------
T ss_pred CeEEEECCCHHHHHHHHHHhhcccceEEEee---------eccc---------cc-------------------------
Confidence 4799999999999999999999999999992 1111 01
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEe-EEEEecCCEEEE-----cCEEEEeCeEEEcCC
Q 008860 153 TEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIEG-RGKIVDPHTVDV-----DGKLYSARHILISVG 218 (551)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~i~~~~v~v-----~g~~~~~d~lviAtG 218 (551)
..+. + +...+.+.+++.||+++.+ ++..+++....+ +++++.+|.+++|+|
T Consensus 59 ---~~d~-~-----------~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~~~~~~~~~~~~i~~D~vi~A~G 115 (115)
T d1lvla2 59 ---TYDS-E-----------LTAPVAESLKKLGIALHLGHSVEGYENGCLLANDGKGGQLRLEADRVLVAVG 115 (115)
T ss_dssp ---TSCH-H-----------HHHHHHHHHHHHTCEEETTCEEEEEETTEEEEECSSSCCCEECCSCEEECCC
T ss_pred ---cccc-h-----------hHHHHHHHHHhhcceEEcCcEEEEEcCCeEEEEEcCCCeEEEEcCEEEEecC
Confidence 1121 1 1222334566679999887 356666655444 235799999999998
|
| >d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Probab=98.55 E-value=1.9e-07 Score=77.71 Aligned_cols=30 Identities=23% Similarity=0.299 Sum_probs=29.1
Q ss_pred ccEEEECCChHHHHHHHHHHhCCCcEEEEc
Q 008860 73 FDLFTIGAGSGGVRASRFAANFGASVAICE 102 (551)
Q Consensus 73 ~dVvIIGgG~aGl~aA~~l~~~G~~V~liE 102 (551)
.+++|||||+.|+.+|..|++.|.+|+|+|
T Consensus 36 k~v~VIGgG~iG~E~A~~l~~~g~~Vtvie 65 (133)
T d1q1ra2 36 NRLVVIGGGYIGLEVAATAIKANMHVTLLD 65 (133)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEC
T ss_pred CEEEEECCchHHHHHHHHHHhhCcceeeee
Confidence 579999999999999999999999999999
|
| >d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.53 E-value=2.1e-08 Score=96.13 Aligned_cols=41 Identities=20% Similarity=0.343 Sum_probs=38.0
Q ss_pred CccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCeec
Q 008860 72 DFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCV 121 (551)
Q Consensus 72 ~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~~ 121 (551)
|+||||||||++|++||..|++.|++|+|+|+ +..+||.|.
T Consensus 1 M~dv~IIGaG~sGl~~A~~L~~~g~~V~iiEk---------~~~iGG~~~ 41 (298)
T d1i8ta1 1 MYDYIIVGSGLFGAVCANELKKLNKKVLVIEK---------RNHIGGNAY 41 (298)
T ss_dssp CEEEEEECCSHHHHHHHHHHGGGTCCEEEECS---------SSSSSGGGC
T ss_pred CccEEEECCcHHHHHHHHHHHhCCCcEEEEEC---------CCCcccceE
Confidence 58999999999999999999999999999994 788999874
|
| >d1vdca2 c.3.1.5 (A:118-243) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.53 E-value=3.3e-07 Score=75.45 Aligned_cols=104 Identities=19% Similarity=0.183 Sum_probs=74.7
Q ss_pred CceecchhhhcCCCCCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCCCCCHHHHHHHHHHHHhcCcEEEcCccc
Q 008860 230 EYAIDSDAALDLPSKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRDFVAEQMSLRGIEFHTEESP 309 (551)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~~~~~v 309 (551)
.++.++|....+ -..|+|+|||+|.+|+|.|.+|++...+||+++|++.+-. ++.. +.+.++..+|++++++++
T Consensus 20 syca~CDg~a~~-frgk~V~VvGgGdsA~e~A~~L~~~a~~V~li~r~~~~ra--~~~~---~~~l~~~~nI~v~~~~~v 93 (130)
T d1vdca2 20 SACAVCDGAAPI-FRNKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDAFRA--SKIM---QQRALSNPKIDVIWNSSV 93 (130)
T ss_dssp ESCHHHHTTSGG-GTTSEEEEECCSHHHHHHHHHHTTTSSEEEEECSSSSCCS--CHHH---HHHHHTCTTEEEECSEEE
T ss_pred EEEEEecCchHH-hCCCEEEEEcCchHHHHHHHHHhCCCCcEEEEEecccccc--chhh---hhccccCCceEEEeccEE
Confidence 345566642100 1368999999999999999999999999999999987543 3322 233445567999999999
Q ss_pred EEEEEcCC--ceEEEEE---CCC--eEEEeeEEEEec
Q 008860 310 QAILKSTD--GSLSVKT---NKG--TVDGFSHVMFAT 339 (551)
Q Consensus 310 ~~i~~~~~--~~~~V~~---~~G--~~i~~d~vi~a~ 339 (551)
.++..++. ....+.+ .+| +++++|.|++++
T Consensus 94 ~~i~Gd~~~~~v~~v~l~~~~tge~~~l~~dGvFVaI 130 (130)
T d1vdca2 94 VEAYGDGERDVLGGLKVKNVVTGDVSDLKVSGLFFAI 130 (130)
T ss_dssp EEEEESSSSSSEEEEEEEETTTCCEEEEECSEEEECS
T ss_pred EEEEccCCcccEEEEEEEECCCCCEEEEECCEEEEEC
Confidence 99998754 2223443 233 479999999874
|
| >d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Adrenodoxin reductase of mitochondrial p450 systems species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.51 E-value=9e-09 Score=94.83 Aligned_cols=39 Identities=21% Similarity=0.181 Sum_probs=33.0
Q ss_pred ccEEEECCChHHHHHHHHHHh--CCCcEEEEccCCCCCCCCCCCCCCCee
Q 008860 73 FDLFTIGAGSGGVRASRFAAN--FGASVAICELPFSTISSETTGGVGGTC 120 (551)
Q Consensus 73 ~dVvIIGgG~aGl~aA~~l~~--~G~~V~liE~~~~~~~~~~~~~~GG~~ 120 (551)
.+|+|||||||||+||.+|++ .|++|+|||+ ...+||.+
T Consensus 2 ~kv~iIGaGpaGl~aA~~L~~~~~~~~V~v~e~---------~~~~gG~~ 42 (230)
T d1cjca2 2 PQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEK---------QLVPFGLV 42 (230)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCSSCEEEEECS---------SSSSCTHH
T ss_pred CeEEEECccHHHHHHHHHHHhcCCCCeEEEEeC---------CCCCCcee
Confidence 479999999999999999987 4789999993 45677764
|
| >d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Apoptosis-inducing factor (AIF) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.50 E-value=4.5e-08 Score=88.85 Aligned_cols=47 Identities=23% Similarity=0.434 Sum_probs=35.9
Q ss_pred HHhCCeEEEEeE-EEEec--CCEEEE-cCEEEEeCeEEEcCCCCCCCCCCC
Q 008860 181 LINAGITLIEGR-GKIVD--PHTVDV-DGKLYSARHILISVGGRPFIPDIP 227 (551)
Q Consensus 181 ~~~~~v~~~~~~-~~~i~--~~~v~v-~g~~~~~d~lviAtG~~p~~p~i~ 227 (551)
+++.+|+++.+. +..++ .+++.+ +|+++.||+||+|||+.|..++++
T Consensus 93 ~~~~gI~~~~g~~V~~id~~~~~V~l~dG~~i~~d~lViAtG~~~~~~~l~ 143 (213)
T d1m6ia1 93 IENGGVAVLTGKKVVQLDVRDNMVKLNDGSQITYEKCLIATGGTEPNVELA 143 (213)
T ss_dssp STTCEEEEEETCCEEEEEGGGTEEEETTSCEEEEEEEEECCCEEEECCTTH
T ss_pred HHHCCeEEEeCCEEEEeeccCceeeeccceeeccceEEEeeeeecchhhhh
Confidence 345689998874 66664 457777 889999999999999887655544
|
| >d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Azotobacter vinelandii [TaxId: 354]
Probab=98.49 E-value=4.8e-07 Score=73.55 Aligned_cols=30 Identities=37% Similarity=0.397 Sum_probs=29.0
Q ss_pred ccEEEECCChHHHHHHHHHHhCCCcEEEEc
Q 008860 73 FDLFTIGAGSGGVRASRFAANFGASVAICE 102 (551)
Q Consensus 73 ~dVvIIGgG~aGl~aA~~l~~~G~~V~liE 102 (551)
.+++|||||+.|+-.|..+++.|.+|+++|
T Consensus 23 ~~i~IiG~G~ig~E~A~~l~~~G~~Vtiv~ 52 (119)
T d3lada2 23 GKLGVIGAGVIGLELGSVWARLGAEVTVLE 52 (119)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEEE
T ss_pred CeEEEECCChHHHHHHHHHHHcCCceEEEE
Confidence 479999999999999999999999999999
|
| >d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Lysine-specific histone demethylase 1, LSD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.46 E-value=5.8e-08 Score=94.70 Aligned_cols=42 Identities=31% Similarity=0.501 Sum_probs=36.5
Q ss_pred CCCccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCee
Q 008860 70 HYDFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTC 120 (551)
Q Consensus 70 ~~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~ 120 (551)
++..||||||||++||+||++|++.|++|+|+|+ .+.+||.+
T Consensus 3 ~~~~kViVIGaG~aGL~aA~~L~~~G~~V~VlEa---------~~r~GGr~ 44 (449)
T d2dw4a2 3 KKTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEA---------RDRVGGRV 44 (449)
T ss_dssp SCCCEEEEECCBHHHHHHHHHHHHTTCEEEEECS---------SSSSBTTC
T ss_pred CCCCcEEEECCCHHHHHHHHHHHhCCCCEEEEeC---------CCCCcccE
Confidence 3457899999999999999999999999999994 56677754
|
| >d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Probab=98.44 E-value=4.9e-08 Score=84.84 Aligned_cols=28 Identities=18% Similarity=0.455 Sum_probs=25.9
Q ss_pred cEEEECCChHHHHHHHHHHhCCCcEEEEc
Q 008860 74 DLFTIGAGSGGVRASRFAANFGASVAICE 102 (551)
Q Consensus 74 dVvIIGgG~aGl~aA~~l~~~G~~V~liE 102 (551)
+|+|||||++|+.+|..|++ +.+|+|+|
T Consensus 2 rVvIIGgG~~G~e~A~~l~~-~~~Vtvv~ 29 (167)
T d1xhca1 2 KVVIVGNGPGGFELAKQLSQ-TYEVTVID 29 (167)
T ss_dssp EEEEECCSHHHHHHHHHHTT-TSEEEEEC
T ss_pred eEEEECCcHHHHHHHHHHHc-CCCEEEEe
Confidence 69999999999999999975 77999999
|
| >d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Probab=98.38 E-value=2.1e-06 Score=70.08 Aligned_cols=88 Identities=20% Similarity=0.301 Sum_probs=60.4
Q ss_pred ccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhhccCCCcccC
Q 008860 73 FDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDESNGFGWKYG 152 (551)
Q Consensus 73 ~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~~~ 152 (551)
.+|+|||||+.|+.+|..|++.|.+|++||+ ...+ +|
T Consensus 31 k~vvViGgG~iG~E~A~~l~~~g~~Vtlie~---------~~~~---------l~------------------------- 67 (123)
T d1nhpa2 31 NNVVVIGSGYIGIEAAEAFAKAGKKVTVIDI---------LDRP---------LG------------------------- 67 (123)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEES---------SSST---------TT-------------------------
T ss_pred CEEEEECChHHHHHHHHHhhccceEEEEEEe---------cCcc---------cc-------------------------
Confidence 4799999999999999999999999999992 1110 00
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEeE-EEEecCC----EEEEcCEEEEeCeEEEcC
Q 008860 153 TEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIEGR-GKIVDPH----TVDVDGKLYSARHILISV 217 (551)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~i~~~----~v~v~g~~~~~d~lviAt 217 (551)
..++ + .+...+.+.+++.|++++.++ +..+... .+..+++.+.+|.+++|.
T Consensus 68 --~~~d-~-----------~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~v~~dg~~i~~D~vi~aI 123 (123)
T d1nhpa2 68 --VYLD-K-----------EFTDVLTEEMEANNITIATGETVERYEGDGRVQKVVTDKNAYDADLVVVAV 123 (123)
T ss_dssp --TTCC-H-----------HHHHHHHHHHHTTTEEEEESCCEEEEECSSBCCEEEESSCEEECSEEEECS
T ss_pred --cccc-h-----------hhHHHHHHHhhcCCeEEEeCceEEEEEcCCCEEEEEeCCCEEECCEEEEEC
Confidence 0011 1 112334456777899999884 4444322 333488999999999873
|
| >d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Dihydroxypyridine hydroxylase DhpH species: Arthrobacter nicotinovorans [TaxId: 29320]
Probab=98.35 E-value=2.3e-06 Score=79.60 Aligned_cols=100 Identities=19% Similarity=0.309 Sum_probs=77.7
Q ss_pred CCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCCC------CCHHHHHH---------------------------
Q 008860 245 PEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRG------FDEDIRDF--------------------------- 291 (551)
Q Consensus 245 ~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~~------~~~~~~~~--------------------------- 291 (551)
.++|+|||+|+.|+-+|..|++.|.+|+++++.+..... +.+.....
T Consensus 4 ~~kV~IiGaG~aGl~~A~~L~~~G~~v~v~Er~~~~~~~~~~g~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~ 83 (265)
T d2voua1 4 TDRIAVVGGSISGLTAALMLRDAGVDVDVYERSPQPLSGFGTGIVVQPELVHYLLEQGVELDSISVPSSSMEYVDALTGE 83 (265)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCCCCSCEEECCHHHHHHHHHTTCCGGGTCBCCCEEEEEETTTCC
T ss_pred CCcEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCceEEEECccHHHHHHHcCcchhhhccCCCcceeEeccCCc
Confidence 579999999999999999999999999999987654321 22222222
Q ss_pred -----------------HHHHH-HhcCcEEEcCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCcCCCC
Q 008860 292 -----------------VAEQM-SLRGIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNT 345 (551)
Q Consensus 292 -----------------l~~~l-~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~~ 345 (551)
+...+ ...++.++++++++++..++++ +.+++.||+++.+|.+|.|.|.....
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-v~v~~~dG~~~~~d~~v~adG~~s~~ 154 (265)
T d2voua1 84 RVGSVPADWRFTSYDSIYGGLYELFGPERYHTSKCLVGLSQDSET-VQMRFSDGTKAEANWVIGADGGASVV 154 (265)
T ss_dssp EEEEEECCCCEEEHHHHHHHHHHHHCSTTEETTCCEEEEEECSSC-EEEEETTSCEEEESEEEECCCTTCHH
T ss_pred eecccccccccchhHHHHHHHHHhcccceeecCcEEEEEEeeCCc-eEEEECCCCEEEEEEEeccccccccc
Confidence 11111 2447889999999999988777 88999999999999999999976543
|
| >d2cula1 c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: GidA-like domain: GidA-related protein TTHA1897 species: Thermus thermophilus [TaxId: 274]
Probab=98.32 E-value=6.3e-06 Score=74.19 Aligned_cols=94 Identities=18% Similarity=0.223 Sum_probs=69.8
Q ss_pred eEEEEcCcHHHHHHHHHHHhCCCeEEEEeecC-cc------------CCC-----CC------HHHHHHHHHHHHh-cCc
Q 008860 247 KIAIVGGGYIALEFAGIFSGLTSEVHVFIRQK-KV------------LRG-----FD------EDIRDFVAEQMSL-RGI 301 (551)
Q Consensus 247 ~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~-~~------------l~~-----~~------~~~~~~l~~~l~~-~Gv 301 (551)
.|+|||+|+.|+|.|.+.++.|.++-+++... .+ .+. .+ ......+++.++. .++
T Consensus 4 DVIVIGgG~AG~eAA~~aAR~G~ktllit~~~~~ig~~~cnp~~gg~~kg~l~reid~kG~av~a~raQ~k~~l~~~~nL 83 (230)
T d2cula1 4 QVLIVGAGFSGAETAFWLAQKGVRVGLLTQSLDAVMMPFLPPKPPFPPGSLLERAYDPKDERVWAFHARAKYLLEGLRPL 83 (230)
T ss_dssp SEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCSSCCCSCCCTTCHHHHHCCTTCCCHHHHHHHHHHHHHTCTTE
T ss_pred cEEEECcCHHHHHHHHHHHHCCCcEEEEEeccchhcccccCCccccCCCcceeeeeeccchhhhhHHHHHHHHHhhhcCH
Confidence 58999999999999999999999999997642 11 000 00 1122233444443 488
Q ss_pred EEEcCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCc
Q 008860 302 EFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGR 341 (551)
Q Consensus 302 ~i~~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~ 341 (551)
.++.. +|.++..+++....|++.+|.++.|..||++||.
T Consensus 84 ~i~q~-~V~dli~e~~~v~gV~t~~G~~~~AkaVILtTGT 122 (230)
T d2cula1 84 HLFQA-TATGLLLEGNRVVGVRTWEGPPARGEKVVLAVGS 122 (230)
T ss_dssp EEEEC-CEEEEEEETTEEEEEEETTSCCEECSEEEECCTT
T ss_pred HHHhc-cceeeEecccceeeEEeccccEEEEeEEEEccCc
Confidence 88766 7888887777767899999999999999999995
|
| >d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavin-dependent monoxygenase SPBP16F5.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Probab=98.31 E-value=5.2e-07 Score=71.83 Aligned_cols=97 Identities=14% Similarity=0.114 Sum_probs=65.1
Q ss_pred CCCCCCCC--------ceecchhhhcCC-CCCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCCCCCHHHHHHHH
Q 008860 223 IPDIPGSE--------YAIDSDAALDLP-SKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRDFVA 293 (551)
Q Consensus 223 ~p~i~g~~--------~~~~~~~~~~~~-~~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~ 293 (551)
+|.+||++ .++++.++..-. -.+|+|+|||+|.+|+++|..|++.+.+++++.+.+.....
T Consensus 1 iP~ipGl~~f~~~~~G~i~Hs~~y~~~~~f~gK~VlVVG~g~Sa~dia~~l~~~ak~v~~~~~r~~~~~~---------- 70 (107)
T d2gv8a2 1 IPNIKGLDEYAKAVPGSVLHSSLFREPELFVGESVLVVGGASSANDLVRHLTPVAKHPIYQSLLGGGDIQ---------- 70 (107)
T ss_dssp BCCCBTHHHHHHHSTTSEEEGGGCCCGGGGTTCCEEEECSSHHHHHHHHHHTTTSCSSEEEECTTCCSCB----------
T ss_pred CcCCCChHHHhccCCccEEECCcCcchhhcCCCeEEEECCCCCHHHHHHHHHHhcCEEEEEEecCccccc----------
Confidence 36677753 234443333211 24799999999999999999999999998888776653321
Q ss_pred HHHHhcCcEEEcCcccEEEEEcCCceEEEEECCCeEEE-eeEEEEe
Q 008860 294 EQMSLRGIEFHTEESPQAILKSTDGSLSVKTNKGTVDG-FSHVMFA 338 (551)
Q Consensus 294 ~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~G~~i~-~d~vi~a 338 (551)
..++... ..+.+++.++. .+.+.||++++ .|.||+|
T Consensus 71 ----~~~~~~~--~~i~~~~~~~~---~v~~~dG~~~~~vD~Ii~C 107 (107)
T d2gv8a2 71 ----NESLQQV--PEITKFDPTTR---EIYLKGGKVLSNIDRVIYC 107 (107)
T ss_dssp ----CSSEEEE--CCEEEEETTTT---EEEETTTEEECCCSEEEEC
T ss_pred ----cccceec--CCeeEEecCCC---EEEEcCCCEEeCCCEEEEC
Confidence 1123322 24666655443 48899999876 7999987
|
| >d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Apoptosis-inducing factor (AIF) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.31 E-value=1.6e-06 Score=72.25 Aligned_cols=89 Identities=18% Similarity=0.200 Sum_probs=60.1
Q ss_pred ccEEEECCChHHHHHHHHHHh----CCCcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhhccCCC
Q 008860 73 FDLFTIGAGSGGVRASRFAAN----FGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDESNGFG 148 (551)
Q Consensus 73 ~dVvIIGgG~aGl~aA~~l~~----~G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g 148 (551)
.+++|||||+.|+-+|..|++ .|.+|++||+ ...+- +
T Consensus 38 k~i~IvGgG~~G~E~A~~l~~~~~~~g~~Vt~i~~---------~~~~l---------~--------------------- 78 (137)
T d1m6ia2 38 KSITIIGGGFLGSELACALGRKARALGTEVIQLFP---------EKGNM---------G--------------------- 78 (137)
T ss_dssp SEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECS---------SSSTT---------T---------------------
T ss_pred CEEEEECCCHHHHHHHHHHHHHHHhcCCEEEEecc---------cccCC---------c---------------------
Confidence 479999999999999998864 6899999992 11100 0
Q ss_pred cccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEeE-EEEec--CCE--EEE-cCEEEEeCeEEEcCC
Q 008860 149 WKYGTEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIEGR-GKIVD--PHT--VDV-DGKLYSARHILISVG 218 (551)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~i~--~~~--v~v-~g~~~~~d~lviAtG 218 (551)
..++ + .+...+.+.+++.||+++.+. +..++ ... +.+ +|+.+.+|.+++|+|
T Consensus 79 ------~~~~-~-----------~~~~~~~~~l~~~GV~~~~~~~V~~i~~~~~~~~v~l~~G~~i~aD~Vi~A~G 136 (137)
T d1m6ia2 79 ------KILP-E-----------YLSNWTMEKVRREGVKVMPNAIVQSVGVSSGKLLIKLKDGRKVETDHIVAAVG 136 (137)
T ss_dssp ------TTSC-H-----------HHHHHHHHHHHTTTCEEECSCCEEEEEEETTEEEEEETTSCEEEESEEEECCC
T ss_pred ------ccCC-H-----------HHHHHHHHHHHhCCcEEEeCCEEEEEEecCCEEEEEECCCCEEECCEEEEeec
Confidence 0001 1 112234456778899999874 44442 333 444 788999999999998
|
| >d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Crithidia fasciculata [TaxId: 5656]
Probab=98.28 E-value=2e-06 Score=69.51 Aligned_cols=88 Identities=15% Similarity=0.145 Sum_probs=59.8
Q ss_pred ccEEEECCChHHHHHHHHHHh---CCCcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhhccCCCc
Q 008860 73 FDLFTIGAGSGGVRASRFAAN---FGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDESNGFGW 149 (551)
Q Consensus 73 ~dVvIIGgG~aGl~aA~~l~~---~G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~ 149 (551)
.+++|||||+.|+-+|..+++ .|.+|+++|+ .+.+ +|
T Consensus 19 ~~v~IiGgG~ig~E~A~~l~~~~~~g~~Vtli~~---------~~~i---------l~---------------------- 58 (117)
T d1feca2 19 KRALCVGGGYISIEFAGIFNAYKARGGQVDLAYR---------GDMI---------LR---------------------- 58 (117)
T ss_dssp SEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEES---------SSSS---------ST----------------------
T ss_pred CeEEEECCChHHHHHHHHhHhhcccccccceecc---------cccc---------cc----------------------
Confidence 479999999999999987665 5889999992 1110 00
Q ss_pred ccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEeE-EEEec---CC--EEEE-cCEEEEeCeEEEcCC
Q 008860 150 KYGTEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIEGR-GKIVD---PH--TVDV-DGKLYSARHILISVG 218 (551)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~i~---~~--~v~v-~g~~~~~d~lviAtG 218 (551)
.+|. .+...+.+.+++.||+++.+. +..+. .. .+.. +++.+.+|.+++|+|
T Consensus 59 ------~~d~------------~~~~~~~~~l~~~GI~v~~~~~v~~i~~~~~g~~~v~~~~g~~i~~D~Vi~a~G 116 (117)
T d1feca2 59 ------GFDS------------ELRKQLTEQLRANGINVRTHENPAKVTKNADGTRHVVFESGAEADYDVVMLAIG 116 (117)
T ss_dssp ------TSCH------------HHHHHHHHHHHHTTEEEEETCCEEEEEECTTSCEEEEETTSCEEEESEEEECSC
T ss_pred ------cccc------------hhhHHHHHHHhhCcEEEEcCCEEEEEEECCCCEEEEEECCCCEEEcCEEEEecC
Confidence 1111 122334456788899999884 44442 22 2344 788999999999998
|
| >d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Klebsiella pneumoniae [TaxId: 573]
Probab=98.28 E-value=2.5e-07 Score=89.15 Aligned_cols=40 Identities=28% Similarity=0.429 Sum_probs=36.8
Q ss_pred CccEEEECCChHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCCCCCee
Q 008860 72 DFDLFTIGAGSGGVRASRFAANFGASVAICELPFSTISSETTGGVGGTC 120 (551)
Q Consensus 72 ~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~~~~~~~~~~GG~~ 120 (551)
..+|+|||||++||+||..|++.|++|+|+|+ .+.+||.|
T Consensus 2 ~KKI~IIGaG~sGL~aA~~L~k~G~~V~viEk---------~~~iGG~~ 41 (314)
T d2bi7a1 2 SKKILIVGAGFSGAVIGRQLAEKGHQVHIIDQ---------RDHIGGNS 41 (314)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTTCEEEEEES---------SSSSSGGG
T ss_pred CCEEEEECCcHHHHHHHHHHHhCCCCEEEEEC---------CCCCcCee
Confidence 46899999999999999999999999999994 77899987
|
| >d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=98.27 E-value=3.9e-06 Score=67.74 Aligned_cols=30 Identities=40% Similarity=0.532 Sum_probs=29.1
Q ss_pred ccEEEECCChHHHHHHHHHHhCCCcEEEEc
Q 008860 73 FDLFTIGAGSGGVRASRFAANFGASVAICE 102 (551)
Q Consensus 73 ~dVvIIGgG~aGl~aA~~l~~~G~~V~liE 102 (551)
.+++|||||+.|+.+|..+++.|.+|+|+|
T Consensus 23 ~~v~IiGgG~ig~E~A~~l~~~G~~Vtlve 52 (117)
T d1ebda2 23 KSLVVIGGGYIGIELGTAYANFGTKVTILE 52 (117)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEEE
T ss_pred CeEEEECCCccceeeeeeecccccEEEEEE
Confidence 479999999999999999999999999999
|
| >d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Probab=98.23 E-value=7.9e-08 Score=84.92 Aligned_cols=31 Identities=19% Similarity=0.113 Sum_probs=27.2
Q ss_pred CccEEEECCChHHHHHHHHHHhCCCcEEEEc
Q 008860 72 DFDLFTIGAGSGGVRASRFAANFGASVAICE 102 (551)
Q Consensus 72 ~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE 102 (551)
+.+|+|||||++|+.+|..|++.|.+|.|++
T Consensus 3 ~a~VvIIGgG~~G~e~A~~l~~~g~~v~i~~ 33 (183)
T d1d7ya1 3 KAPVVVLGAGLASVSFVAELRQAGYQGLITV 33 (183)
T ss_dssp CSSEEEECCSHHHHHHHHHHHHHTCCSCEEE
T ss_pred CCCEEEECccHHHHHHHHHHHhcCCceEEEE
Confidence 3569999999999999999999988777766
|
| >d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Probab=98.22 E-value=4.8e-06 Score=74.00 Aligned_cols=30 Identities=23% Similarity=0.405 Sum_probs=27.1
Q ss_pred ccEEEECCChHHHHHHHHHHhC--CCcEEEEc
Q 008860 73 FDLFTIGAGSGGVRASRFAANF--GASVAICE 102 (551)
Q Consensus 73 ~dVvIIGgG~aGl~aA~~l~~~--G~~V~liE 102 (551)
++|+|||||++|+.+|..|++. +.+|+++|
T Consensus 1 ~KVvIIGgG~~G~e~A~~l~~~~~~~~V~v~~ 32 (198)
T d1nhpa1 1 MKVIVLGSSHGGYEAVEELLNLHPDAEIQWYE 32 (198)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHCTTSEEEEEE
T ss_pred CEEEEECCcHHHHHHHHHHHhcCCCCeEEEEe
Confidence 3699999999999999999984 56899999
|
| >d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Rhodotorula gracilis [TaxId: 5286]
Probab=98.22 E-value=4.5e-07 Score=84.35 Aligned_cols=35 Identities=26% Similarity=0.291 Sum_probs=32.1
Q ss_pred CCCCccEEEECCChHHHHHHHHHHhCCCcEEEEcc
Q 008860 69 SHYDFDLFTIGAGSGGVRASRFAANFGASVAICEL 103 (551)
Q Consensus 69 ~~~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~ 103 (551)
|..+.||||||||++|+++|++|+++|++|+|||+
T Consensus 3 ~~~~~kVvVIGaGiaGl~~A~~L~~~G~~V~vier 37 (268)
T d1c0pa1 3 MHSQKRVVVLGSGVIGLSSALILARKGYSVHILAR 37 (268)
T ss_dssp CCCSCEEEEECCSHHHHHHHHHHHHTTCEEEEEES
T ss_pred CCCCCcEEEECccHHHHHHHHHHHHCCCCEEEEeC
Confidence 44567999999999999999999999999999993
|
| >d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase species: Xanthobacter sp., py2 [TaxId: 35809]
Probab=98.22 E-value=3.8e-06 Score=68.27 Aligned_cols=30 Identities=13% Similarity=0.179 Sum_probs=29.0
Q ss_pred ccEEEECCChHHHHHHHHHHhCCCcEEEEc
Q 008860 73 FDLFTIGAGSGGVRASRFAANFGASVAICE 102 (551)
Q Consensus 73 ~dVvIIGgG~aGl~aA~~l~~~G~~V~liE 102 (551)
.+|+|||||+.|+-.|..|++.|.+|++++
T Consensus 23 ~~vvVvGgG~ig~E~A~~l~~~g~~vt~i~ 52 (121)
T d1mo9a2 23 STVVVVGGSKTAVEYGCFFNATGRRTVMLV 52 (121)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEEC
T ss_pred CEEEEECCCHHHHHHHHHHHhcchhheEee
Confidence 479999999999999999999999999999
|
| >d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Mammalian thioredoxin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.22 E-value=5.8e-06 Score=67.20 Aligned_cols=30 Identities=20% Similarity=0.295 Sum_probs=28.9
Q ss_pred ccEEEECCChHHHHHHHHHHhCCCcEEEEc
Q 008860 73 FDLFTIGAGSGGVRASRFAANFGASVAICE 102 (551)
Q Consensus 73 ~dVvIIGgG~aGl~aA~~l~~~G~~V~liE 102 (551)
.+++|||||+.|+-.|..+++.|.+|+|++
T Consensus 21 ~~vvIIGgG~iG~E~A~~l~~lG~~Vtii~ 50 (122)
T d1h6va2 21 GKTLVVGASYVALECAGFLAGIGLDVTVMV 50 (122)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCEEEEE
T ss_pred CeEEEECCCccHHHHHHHHhhcCCeEEEEE
Confidence 379999999999999999999999999999
|
| >d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.19 E-value=5.2e-06 Score=67.87 Aligned_cols=30 Identities=17% Similarity=0.208 Sum_probs=29.0
Q ss_pred ccEEEECCChHHHHHHHHHHhCCCcEEEEc
Q 008860 73 FDLFTIGAGSGGVRASRFAANFGASVAICE 102 (551)
Q Consensus 73 ~dVvIIGgG~aGl~aA~~l~~~G~~V~liE 102 (551)
.+++|||||+.|+-+|..|++.|.+|+|+|
T Consensus 23 k~vvIvGgG~iG~E~A~~l~~~G~~Vtlv~ 52 (125)
T d3grsa2 23 GRSVIVGAGYIAVEMAGILSALGSKTSLMI 52 (125)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEEC
T ss_pred CEEEEEcCCccHHHHHHHHhcCCcEEEEEe
Confidence 479999999999999999999999999999
|
| >d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Plasmodium falciparum [TaxId: 5833]
Probab=98.19 E-value=5.1e-06 Score=66.94 Aligned_cols=30 Identities=17% Similarity=0.161 Sum_probs=29.0
Q ss_pred ccEEEECCChHHHHHHHHHHhCCCcEEEEc
Q 008860 73 FDLFTIGAGSGGVRASRFAANFGASVAICE 102 (551)
Q Consensus 73 ~dVvIIGgG~aGl~aA~~l~~~G~~V~liE 102 (551)
.+|+|||||+.|+.+|..|++.|.+|+|+|
T Consensus 23 ~~v~IiGgG~iG~E~A~~l~~~g~~Vtlv~ 52 (117)
T d1onfa2 23 KKIGIVGSGYIAVELINVIKRLGIDSYIFA 52 (117)
T ss_dssp SEEEEECCSHHHHHHHHHHHTTTCEEEEEC
T ss_pred CEEEEECCchHHHHHHHHHHhccccceeee
Confidence 479999999999999999999999999999
|
| >d1w4xa2 c.3.1.5 (A:155-389) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Phenylacetone monooxygenase species: Thermobifida fusca [TaxId: 2021]
Probab=98.15 E-value=3.4e-06 Score=76.98 Aligned_cols=59 Identities=17% Similarity=0.359 Sum_probs=46.7
Q ss_pred CCCCCCCCCCc----eecchhhh-cC-CCCCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCc
Q 008860 221 PFIPDIPGSEY----AIDSDAAL-DL-PSKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKK 279 (551)
Q Consensus 221 p~~p~i~g~~~----~~~~~~~~-~~-~~~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~ 279 (551)
|++|.+||.+. ++++.+.. .. .-.+|+|+|||+|.+|+++|..+.+.+.+++++.+.+.
T Consensus 2 P~iP~~pG~e~F~G~v~HS~~~~~~~~~~~gK~V~VvG~G~Sa~dia~~~~~~~~~~~~~~~~~~ 66 (235)
T d1w4xa2 2 PQLPNFPGLKDFAGNLYHTGNWPHEPVDFSGQRVGVIGTGSSGIQVSPQIAKQAAELFVFQRTPH 66 (235)
T ss_dssp CCCCCCTTGGGCCSEEEEGGGCCSSCCCCBTCEEEEECCSHHHHHHHHHHHHHBSEEEEEESSCC
T ss_pred CCCCCCCChhhCCCcEEecCcCCCCCCCCCCCEEEEECCCccHHHHHHHHHhhhccccccccccc
Confidence 78899999763 45555553 22 23589999999999999999999999999888876653
|
| >d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Dihydropyrimidine dehydrogenase, domain 2 species: Pig (Sus scrofa) [TaxId: 9823]
Probab=98.15 E-value=6.8e-07 Score=79.40 Aligned_cols=40 Identities=28% Similarity=0.470 Sum_probs=34.3
Q ss_pred CccEEEECCChHHHHHHHHHHhCCC-cEEEEccCCCCCCCCCCCCCCCee
Q 008860 72 DFDLFTIGAGSGGVRASRFAANFGA-SVAICELPFSTISSETTGGVGGTC 120 (551)
Q Consensus 72 ~~dVvIIGgG~aGl~aA~~l~~~G~-~V~liE~~~~~~~~~~~~~~GG~~ 120 (551)
..+|+|||||++||+||..|++.|+ +|+|||+ ...+||.+
T Consensus 4 ~~kVaIIGaGpaGl~aA~~l~~~G~~~V~v~E~---------~~~~gg~~ 44 (196)
T d1gtea4 4 SAKIALLGAGPASISCASFLARLGYSDITIFEK---------QEYVGGLS 44 (196)
T ss_dssp GCCEEEECCSHHHHHHHHHHHHTTCCCEEEEES---------SSSCSTHH
T ss_pred CCEEEEECChHHHHHHHHHHHHCCCCeEEEEEe---------cCcccchh
Confidence 4689999999999999999999998 5999994 55666654
|
| >d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Neisseria meningitidis [TaxId: 487]
Probab=98.11 E-value=6.7e-06 Score=67.03 Aligned_cols=30 Identities=23% Similarity=0.419 Sum_probs=29.0
Q ss_pred ccEEEECCChHHHHHHHHHHhCCCcEEEEc
Q 008860 73 FDLFTIGAGSGGVRASRFAANFGASVAICE 102 (551)
Q Consensus 73 ~dVvIIGgG~aGl~aA~~l~~~G~~V~liE 102 (551)
.+++|||||+.|+-.|..+++.|.+|+|+|
T Consensus 27 ~~vvIiGgG~IG~E~A~~~~~~G~~Vtive 56 (125)
T d1ojta2 27 GKLLIIGGGIIGLEMGTVYSTLGSRLDVVE 56 (125)
T ss_dssp SEEEEESCSHHHHHHHHHHHHHTCEEEEEC
T ss_pred CeEEEECCCHHHHHHHHHhhcCCCEEEEEE
Confidence 479999999999999999999999999999
|
| >d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.08 E-value=2.2e-05 Score=63.65 Aligned_cols=30 Identities=27% Similarity=0.413 Sum_probs=29.0
Q ss_pred ccEEEECCChHHHHHHHHHHhCCCcEEEEc
Q 008860 73 FDLFTIGAGSGGVRASRFAANFGASVAICE 102 (551)
Q Consensus 73 ~dVvIIGgG~aGl~aA~~l~~~G~~V~liE 102 (551)
.+++|||||+.|+-.|..|++.|.+|+|+|
T Consensus 24 ~~~vIiG~G~ig~E~A~~l~~lG~~Vtii~ 53 (122)
T d1v59a2 24 KRLTIIGGGIIGLEMGSVYSRLGSKVTVVE 53 (122)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEEC
T ss_pred CeEEEECCCchHHHHHHHHHhhCcceeEEE
Confidence 479999999999999999999999999999
|
| >d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Pyranose 2-oxidase species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]
Probab=98.08 E-value=8.6e-07 Score=87.19 Aligned_cols=35 Identities=23% Similarity=0.418 Sum_probs=33.0
Q ss_pred CCCCccEEEECCChHHHHHHHHHHhCCCcEEEEcc
Q 008860 69 SHYDFDLFTIGAGSGGVRASRFAANFGASVAICEL 103 (551)
Q Consensus 69 ~~~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~ 103 (551)
|..+|||||||+|++|+.+|.+|++.|++|+|+|+
T Consensus 1 md~~yDviIVGsG~aG~v~A~~La~~G~kVlvLEa 35 (379)
T d2f5va1 1 MDIKYDVVIVGSGPIGCTYARELVGAGYKVAMFDI 35 (379)
T ss_dssp CCSEEEEEEECCSHHHHHHHHHHHHTTCEEEEECS
T ss_pred CCCcccEEEECcCHHHHHHHHHHhhCCCeEEEEec
Confidence 56789999999999999999999999999999993
|
| >d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Thi4-like domain: Thiazole biosynthetic enzyme Thi4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.07 E-value=9.1e-07 Score=85.00 Aligned_cols=47 Identities=32% Similarity=0.357 Sum_probs=39.5
Q ss_pred CccEEEECCChHHHHHHHHHHh--CCCcEEEEccCCCCCCCCCCCCCCCeeccCCCcc
Q 008860 72 DFDLFTIGAGSGGVRASRFAAN--FGASVAICELPFSTISSETTGGVGGTCVLRGCVP 127 (551)
Q Consensus 72 ~~dVvIIGgG~aGl~aA~~l~~--~G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p 127 (551)
++||+||||||+|++||++|++ .|++|+|+|+ ...+||.+...++.+
T Consensus 50 ~~~~~~~g~g~~g~~~a~~~~~~~~~~~~~~~~~---------~~~~~~~~~~g~~~~ 98 (311)
T d2gjca1 50 VSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIES---------SVAPGGGSWLGGQLF 98 (311)
T ss_dssp EESEEEECCSHHHHHHHHHHHHHCTTSCEEEECS---------SSSCCTTTTCCGGGC
T ss_pred CCCEEEECCCHHHHHHHHHHHHhCCCCeEEEEEc---------CCCCcceeEecCEeC
Confidence 5899999999999999999996 5999999993 567888876655544
|
| >d1cjca1 c.3.1.1 (A:107-331) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Adrenodoxin reductase of mitochondrial p450 systems species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.00 E-value=2.4e-05 Score=70.77 Aligned_cols=119 Identities=24% Similarity=0.333 Sum_probs=75.8
Q ss_pred CCCCCCCC--ceecchhhhcC------------CCCCCeEEEEcCcHHHHHHHHHHHh--------------------CC
Q 008860 223 IPDIPGSE--YAIDSDAALDL------------PSKPEKIAIVGGGYIALEFAGIFSG--------------------LT 268 (551)
Q Consensus 223 ~p~i~g~~--~~~~~~~~~~~------------~~~~~~vvViG~G~~g~e~a~~l~~--------------------~g 268 (551)
..+|||.+ .++..-+++.+ ...+++|+|||+|.+|+++|..+.+ .|
T Consensus 3 ~L~IPGedl~gV~~A~dfl~~~N~~p~~~~~~~~~~gk~VvVIGgGNVAlD~aR~l~r~~~~l~~tdi~~~~l~~l~~~g 82 (225)
T d1cjca1 3 ALDIPGEELPGVFSARAFVGWYNGLPENRELAPDLSCDTAVILGQGNVALDVARILLTPPDHLEKTDITEAALGALRQSR 82 (225)
T ss_dssp CCCCTTTTSTTEEEHHHHHHHHTTCGGGTTCCCCTTSSEEEEESCSHHHHHHHHHHHSCGGGGTTSCCCHHHHHHHHTCC
T ss_pred CCCCCCCCCCCcEeHHHHHHHHhCCccccccCccccCceEEEECCchhHHHHHHHHhcCHHhhcCCCCcHHHHHHHhccC
Confidence 35678754 35655554421 1236899999999999999999887 34
Q ss_pred -CeEEEEeecCccCCCCC-HHHHH-----------------------------------HHHHHH--------------H
Q 008860 269 -SEVHVFIRQKKVLRGFD-EDIRD-----------------------------------FVAEQM--------------S 297 (551)
Q Consensus 269 -~~Vtlv~~~~~~l~~~~-~~~~~-----------------------------------~l~~~l--------------~ 297 (551)
.+|+++.|+...-..+. +++.+ .+.+.+ .
T Consensus 83 ~~~V~iv~RRg~~~~~ft~~Elre~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (225)
T d1cjca1 83 VKTVWIVGRRGPLQVAFTIKELREMIQLPGTRPMLDPADFLGLQDRIKEAARPRKRLMELLLRTATEKPGVEEAARRASA 162 (225)
T ss_dssp CCEEEEECSSCGGGCCCCHHHHHHHHTCTTEEEECCGGGGTTHHHHTTTSCHHHHHHHHHHHHHHHSCCCHHHHHHHHTC
T ss_pred CCeEEEEEEcChHhCCCCchhhhcccccCCCcceechhhhccchhhhhhhhhHHHHHHHHHHHHHHhccccccccccccc
Confidence 48999998875322222 22211 111111 1
Q ss_pred hcCcEEEcCcccEEEEEcCCc--eEEEEEC---------------CCe--EEEeeEEEEecCc
Q 008860 298 LRGIEFHTEESPQAILKSTDG--SLSVKTN---------------KGT--VDGFSHVMFATGR 341 (551)
Q Consensus 298 ~~Gv~i~~~~~v~~i~~~~~~--~~~V~~~---------------~G~--~i~~d~vi~a~G~ 341 (551)
..++.+++.....++..++++ +..+++. .|+ +++||+||.|+|+
T Consensus 163 ~~~i~~~f~~~p~~i~~~~~g~~v~~v~~~~~~~~~~~~~~~~~~tg~~~~ipadlVi~AiGf 225 (225)
T d1cjca1 163 SRAWGLRFFRSPQQVLPSPDGRRAAGIRLAVTRLEGIGEATRAVPTGDVEDLPCGLVLSSIGY 225 (225)
T ss_dssp SEEEEEECSEEEEEEEECTTSSSEEEEEEEEEEEESSGGGCEEEEEEEEEEEECSEEEECCCE
T ss_pred ccceEEEeecccccccccCCCCeEEEEEEEEeEECCCCCCCcccCCCcEEEEECCEEEECCCC
Confidence 356889999999999887643 2223221 122 5899999999996
|
| >d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=98.00 E-value=1e-05 Score=65.81 Aligned_cols=30 Identities=30% Similarity=0.442 Sum_probs=29.0
Q ss_pred ccEEEECCChHHHHHHHHHHhCCCcEEEEc
Q 008860 73 FDLFTIGAGSGGVRASRFAANFGASVAICE 102 (551)
Q Consensus 73 ~dVvIIGgG~aGl~aA~~l~~~G~~V~liE 102 (551)
.+++|||||..|+-.|..+++.|.+|+|+|
T Consensus 26 ~~~viiG~G~iglE~A~~~~~~G~~Vtvi~ 55 (123)
T d1dxla2 26 KKLVVIGAGYIGLEMGSVWGRIGSEVTVVE 55 (123)
T ss_dssp SEEEESCCSHHHHHHHHHHHHHTCEEEEEC
T ss_pred CeEEEEccchHHHHHHHHHHhcCCeEEEEE
Confidence 479999999999999999999999999999
|
| >d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Trypanosoma cruzi [TaxId: 5693]
Probab=97.96 E-value=2.5e-05 Score=62.75 Aligned_cols=87 Identities=17% Similarity=0.253 Sum_probs=57.8
Q ss_pred ccEEEECCChHHHHHHHHHHh---CCCcEEEEccCCCCCCCCCCCCCCCeeccCCCcchHHHHHhhhhhhHhhhccCCCc
Q 008860 73 FDLFTIGAGSGGVRASRFAAN---FGASVAICELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKFSHEFDESNGFGW 149 (551)
Q Consensus 73 ~dVvIIGgG~aGl~aA~~l~~---~G~~V~liE~~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~ 149 (551)
.+++|||||+.|+-+|..+.+ .|.+|+|||+ .+.+ +|
T Consensus 21 ~~v~ivGgG~ig~E~A~~l~~l~~~~~~Vtli~~---------~~~i---------L~---------------------- 60 (117)
T d1aoga2 21 RRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYR---------GEMI---------LR---------------------- 60 (117)
T ss_dssp SEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEES---------SSSS---------ST----------------------
T ss_pred CeEEEECCcHHHHHHHHHhhhcccCCcEEEEEec---------cchh---------hc----------------------
Confidence 479999999999999987766 4568999992 1110 01
Q ss_pred ccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEeE-EEEec---CC--EEEE-cCEEEEeCeEEEcC
Q 008860 150 KYGTEPQHDWSTLIANKNAELQRLTGIYKNILINAGITLIEGR-GKIVD---PH--TVDV-DGKLYSARHILISV 217 (551)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~i~---~~--~v~v-~g~~~~~d~lviAt 217 (551)
.+| ..+...+.+.+++.||+++.+. +..++ .. .+.+ +|+++.+|.|++|.
T Consensus 61 ------~~d------------~~~~~~l~~~l~~~GV~v~~~~~v~~ie~~~~~~~~v~~~~G~~i~~D~Vi~AI 117 (117)
T d1aoga2 61 ------GFD------------HTLREELTKQLTANGIQILTKENPAKVELNADGSKSVTFESGKKMDFDLVMMAI 117 (117)
T ss_dssp ------TSC------------HHHHHHHHHHHHHTTCEEEESCCEEEEEECTTSCEEEEETTSCEEEESEEEECS
T ss_pred ------ccc------------hHHHHHHHHHHHhcCcEEEcCCEEEEEEEcCCCeEEEEECCCcEEEeCEEEEeC
Confidence 111 1122334456778899999884 44443 22 3444 78899999999983
|
| >d1jnra2 c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reductase A subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Adenylylsulfate reductase A subunit species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=97.92 E-value=3.8e-06 Score=81.96 Aligned_cols=33 Identities=33% Similarity=0.395 Sum_probs=30.0
Q ss_pred CCccEEEECCChHHHHHHHHHHh----CCCcEEEEcc
Q 008860 71 YDFDLFTIGAGSGGVRASRFAAN----FGASVAICEL 103 (551)
Q Consensus 71 ~~~dVvIIGgG~aGl~aA~~l~~----~G~~V~liE~ 103 (551)
.++||||||+|+||++||++|++ +|++|+||||
T Consensus 20 ~e~DVlIIG~G~AGl~AA~~aa~~~~~~G~~V~vieK 56 (356)
T d1jnra2 20 VETDILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEK 56 (356)
T ss_dssp EECSEEEECCSHHHHHHHHHHHHHHTTTTCCEEEECS
T ss_pred EecCEEEECCCHHHHHHHHHHHHHHHhCcCEEEEEeC
Confidence 36899999999999999999975 7999999994
|
| >d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Monooxygenase PhzS species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.90 E-value=5.6e-05 Score=70.40 Aligned_cols=151 Identities=17% Similarity=0.122 Sum_probs=98.0
Q ss_pred CCeEEEEcCcHHHHHHHHHHHhCCC-eEEEEeecCccCCC-----CCHHHHHH---------------------------
Q 008860 245 PEKIAIVGGGYIALEFAGIFSGLTS-EVHVFIRQKKVLRG-----FDEDIRDF--------------------------- 291 (551)
Q Consensus 245 ~~~vvViG~G~~g~e~a~~l~~~g~-~Vtlv~~~~~~l~~-----~~~~~~~~--------------------------- 291 (551)
|-+|+|||+|+.|+-+|..|++.|. +|+++++.+.+... +.+...+.
T Consensus 1 ~~~V~IvGaG~aGl~~A~~L~~~Gi~~V~V~Er~~~~~~~g~~i~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g 80 (288)
T d3c96a1 1 PIDILIAGAGIGGLSCALALHQAGIGKVTLLESSSEIRPLGVGINIQPAAVEALAELGLGPALAATAIPTHELRYIDQSG 80 (288)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESSSSCCCCSCEEEECHHHHHHHHHTTCHHHHHHHSEEECEEEEECTTS
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCCeEEEEeCCCCCCCCceEEEECHHHHHHHHHcCchhhhHhhhcccccceeEcCCC
Confidence 3479999999999999999999996 99999998764321 11211111
Q ss_pred -----------------------------HHHH--HHhcCcEEEcCcccEEEEEcCCceEEEEECCC----eEEEeeEEE
Q 008860 292 -----------------------------VAEQ--MSLRGIEFHTEESPQAILKSTDGSLSVKTNKG----TVDGFSHVM 336 (551)
Q Consensus 292 -----------------------------l~~~--l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~G----~~i~~d~vi 336 (551)
+.+. ....++.+..+++++.+..++++ +.+.+.+| +++.+|++|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-v~v~~~~g~~~~~~~~ad~vi 159 (288)
T d3c96a1 81 ATVWSEPRGVEAGNAYPQYSIHRGELQMILLAAVRERLGQQAVRTGLGVERIEERDGR-VLIGARDGHGKPQALGADVLV 159 (288)
T ss_dssp CEEEEEECGGGGTCSSCEEEEEHHHHHHHHHHHHHHHHCTTSEEESEEEEEEEEETTE-EEEEEEETTSCEEEEEESEEE
T ss_pred CEEEeccccccccccCcccccchhhhHHHHHHHHHHhccCeeeecCcEEEEeeecCCc-EEEEEEcCCCCeEEEeeceee
Confidence 1111 12357889999999998887776 66777655 478999999
Q ss_pred EecCcCCCCCCCCccccCeeecCCCCeEeCCCCCCCCCcEEEeCcCCCC--C---CChHHHHHhHHHHHHHHc
Q 008860 337 FATGRRPNTKNLGLEKVGVKMTKNGAIEVDEYSGTAVPSIWAVGDVTDR--I---NLTPVALMEGGALAKTLF 404 (551)
Q Consensus 337 ~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~t~~~~vya~GD~~~~--~---~~~~~A~~~g~~aa~~i~ 404 (551)
.|-|.+...... . .................++..+||++.. | .-+..|+..+..++..+.
T Consensus 160 ~ADG~~S~vr~~-~-------~~~~~~~~~~~~~~~~~~~~~~gda~h~~~p~~g~G~~~ai~d~~~l~~~l~ 224 (288)
T d3c96a1 160 GADGIHSAVRAH-L-------HPDQRPLRDPLPHWGRGRITLLGDAAHLMYPMGANGASQAILDGIELAAALA 224 (288)
T ss_dssp ECCCTTCHHHHH-H-------CTTCCCCCCCCSCCCBTTEEECTHHHHCCCSSTTCTHHHHHHHHHHHHHHHH
T ss_pred ccCCccceeeee-e-------ccccccccccccccccCcceecccccceeCCccccchhhhhhhHHHHHHHHh
Confidence 999986543210 0 0000001111122345678999999864 1 234567777887777765
|
| >d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: p-Hydroxybenzoate hydroxylase, PHBH species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.89 E-value=3.1e-06 Score=80.16 Aligned_cols=59 Identities=8% Similarity=-0.035 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEE-CCCe--EEEeeEEEEecCcCCCC
Q 008860 287 DIRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKT-NKGT--VDGFSHVMFATGRRPNT 345 (551)
Q Consensus 287 ~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~-~~G~--~i~~d~vi~a~G~~p~~ 345 (551)
.+.+.+.+.+++.+..++.+.........++..+.|.+ .+|+ ++.||+||.|.|.+...
T Consensus 104 ~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~g~~~~i~a~~vVgADG~~S~v 165 (292)
T d1k0ia1 104 EVTRDLMEAREACGATTVYQAAEVRLHDLQGERPYVTFERDGERLRLDCDYIAGCDGFHGIS 165 (292)
T ss_dssp HHHHHHHHHHHHTTCEEESSCEEEEEECTTSSSCEEEEEETTEEEEEECSEEEECCCTTCST
T ss_pred HHHHHHHHHHHhCCCcEEEcceeeeeeeeccCceEEEEecCCcEEEEEeCEEEECCCCCCcc
Confidence 45667777888888888877766655544333255554 4554 57899999999987654
|
| >d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Dihydroxypyridine hydroxylase DhpH species: Arthrobacter nicotinovorans [TaxId: 29320]
Probab=97.86 E-value=4.7e-06 Score=77.42 Aligned_cols=31 Identities=19% Similarity=0.307 Sum_probs=29.6
Q ss_pred ccEEEECCChHHHHHHHHHHhCCCcEEEEcc
Q 008860 73 FDLFTIGAGSGGVRASRFAANFGASVAICEL 103 (551)
Q Consensus 73 ~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~ 103 (551)
.+|+|||||++|+++|..|+++|++|+|+|+
T Consensus 5 ~kV~IiGaG~aGl~~A~~L~~~G~~v~v~Er 35 (265)
T d2voua1 5 DRIAVVGGSISGLTAALMLRDAGVDVDVYER 35 (265)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECS
T ss_pred CcEEEECcCHHHHHHHHHHHHCCCCEEEEeC
Confidence 5799999999999999999999999999993
|
| >d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: GDI-like N domain domain: Guanine nucleotide dissociation inhibitor, GDI species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.86 E-value=6.1e-05 Score=68.72 Aligned_cols=34 Identities=18% Similarity=0.257 Sum_probs=31.8
Q ss_pred eEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCcc
Q 008860 247 KIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKV 280 (551)
Q Consensus 247 ~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~ 280 (551)
.|+|||+|..|+-+|..|++.|.+|+++++.+.+
T Consensus 7 DviViGaG~~Gl~~A~~La~~G~~V~vlE~~~~~ 40 (297)
T d2bcgg1 7 DVIVLGTGITECILSGLLSVDGKKVLHIDKQDHY 40 (297)
T ss_dssp SEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred CEEEECcCHHHHHHHHHHHHCCCCEEEEcCCCCC
Confidence 4899999999999999999999999999998764
|
| >d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase species: Xanthobacter sp., py2 [TaxId: 35809]
Probab=97.83 E-value=1.6e-05 Score=73.83 Aligned_cols=118 Identities=13% Similarity=0.141 Sum_probs=72.7
Q ss_pred eEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCC---------------------------------C-----CCH-H
Q 008860 247 KIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLR---------------------------------G-----FDE-D 287 (551)
Q Consensus 247 ~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~---------------------------------~-----~~~-~ 287 (551)
.++|||+|+.|+++|..++++|.+|+++++.+.+.. . .+. .
T Consensus 44 DvvVIGgG~aG~~aA~~~a~~G~kv~vve~~~~lGG~c~n~GcvP~k~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (261)
T d1mo9a1 44 DAIFIGGGAAGRFGSAYLRAMGGRQLIVDRWPFLGGSCPHNACVPHHLFSDCAAELMLARTFSGQYWFPDMTEKVVGIKE 123 (261)
T ss_dssp SEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSCHHHHHSHHHHHHHHHHHHHHHHHHHTTTSTTCCCCTTCCCCHHH
T ss_pred CEEEECCCHHHHHHHHHHHHCCCeEEEEeccCccccccccccccchHHHHhhHHhHHHHHHhhhhccccccccccccHHH
Confidence 599999999999999999999999999998765311 0 000 0
Q ss_pred HHHH------------HHHHHHhcCcEEEcCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCcCCCCCCCCccccCe
Q 008860 288 IRDF------------VAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNTKNLGLEKVGV 355 (551)
Q Consensus 288 ~~~~------------l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~~~~l~l~~~gl 355 (551)
..+. ..+.+...++....+...+-+. . . +|. .+|++++||.|++|+|.+|++..+...+..+
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~d--~-~--~v~-~~g~~i~ad~viiAtG~~P~~~~i~~~~~~~ 197 (261)
T d1mo9a1 124 VVDLFRAGRNGPHGIMNFQSKEQLNLEYILNCPAKVID--N-H--TVE-AAGKVFKAKNLILAVGAGPGTLDVPEQPRSA 197 (261)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHTSCCCEEESSCCEEEE--T-T--EEE-ETTEEEEBSCEEECCCEECCCCCSTCEECCH
T ss_pred HHHHHHHHHHhhhhhHHHHhhhcccceeEeeeEEEEee--e-c--ccc-cccceEeeeeeeeccCCCCCcCccccccccc
Confidence 0000 0112223334333332322221 1 1 133 3677899999999999999998766555555
Q ss_pred eecCCCCeEeCCCCC
Q 008860 356 KMTKNGAIEVDEYSG 370 (551)
Q Consensus 356 ~~~~~G~i~vd~~~~ 370 (551)
++++.-++.+|+...
T Consensus 198 ~l~~~~Gl~~~~~G~ 212 (261)
T d1mo9a1 198 ELAKILGLDLGPKGE 212 (261)
T ss_dssp HHHHHHTCCBCTTSC
T ss_pred ccccceeeeeccCCE
Confidence 554433466666543
|
| >d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Phenol hydroxylase species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]
Probab=97.78 E-value=5.8e-06 Score=80.34 Aligned_cols=34 Identities=26% Similarity=0.389 Sum_probs=30.6
Q ss_pred CCCccEEEECCChHHHHHHHHHH-----hCCCcEEEEcc
Q 008860 70 HYDFDLFTIGAGSGGVRASRFAA-----NFGASVAICEL 103 (551)
Q Consensus 70 ~~~~dVvIIGgG~aGl~aA~~l~-----~~G~~V~liE~ 103 (551)
+..|||+||||||+|+++|..|+ +.|++|+|||+
T Consensus 5 ~~~yDV~IvGaG~aGl~lA~~La~~~~~~~G~~v~vlEr 43 (360)
T d1pn0a1 5 ESYCDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDK 43 (360)
T ss_dssp EEEEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECS
T ss_pred CCCCCEEEECcCHHHHHHHHHHHhcccccCCCcEEEEcC
Confidence 34699999999999999999996 58999999993
|
| >d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Monooxygenase PhzS species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.77 E-value=1e-05 Score=75.71 Aligned_cols=31 Identities=29% Similarity=0.473 Sum_probs=29.2
Q ss_pred ccEEEECCChHHHHHHHHHHhCCC-cEEEEcc
Q 008860 73 FDLFTIGAGSGGVRASRFAANFGA-SVAICEL 103 (551)
Q Consensus 73 ~dVvIIGgG~aGl~aA~~l~~~G~-~V~liE~ 103 (551)
+||+|||||+|||++|+.|++.|. +|+|+|+
T Consensus 2 ~~V~IvGaG~aGl~~A~~L~~~Gi~~V~V~Er 33 (288)
T d3c96a1 2 IDILIAGAGIGGLSCALALHQAGIGKVTLLES 33 (288)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSEEEEEES
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCCeEEEEeC
Confidence 689999999999999999999996 9999994
|
| >d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Probab=97.74 E-value=1.4e-05 Score=69.86 Aligned_cols=30 Identities=20% Similarity=0.127 Sum_probs=28.1
Q ss_pred ccEEEECCChHHHHHHHHHHhCCCcEEEEc
Q 008860 73 FDLFTIGAGSGGVRASRFAANFGASVAICE 102 (551)
Q Consensus 73 ~dVvIIGgG~aGl~aA~~l~~~G~~V~liE 102 (551)
-||||||||++|+.+|..|++.|.+|++++
T Consensus 4 ~~VvIIGgG~~G~e~A~~l~~~g~~v~v~~ 33 (185)
T d1q1ra1 4 DNVVIVGTGLAGVEVAFGLRASGWEGNIRL 33 (185)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCSEEEE
T ss_pred CCEEEECCcHHHHHHHHHHHHcCCceEEEE
Confidence 589999999999999999999999988887
|
| >d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=97.65 E-value=5.1e-05 Score=68.18 Aligned_cols=94 Identities=16% Similarity=0.172 Sum_probs=62.3
Q ss_pred eEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCCC-------------------------------------CC----
Q 008860 247 KIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRG-------------------------------------FD---- 285 (551)
Q Consensus 247 ~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~~-------------------------------------~~---- 285 (551)
.|+|||+|+.|+++|..++++|.+|+++++.+.+-.. ..
T Consensus 5 DvvVIGgGpaGl~aA~~aa~~G~kV~vie~~~~~GG~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~~~~ 84 (221)
T d1dxla1 5 DVVIIGGGPGGYVAAIKAAQLGFKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAKHSFANHGVKVSNVEIDLAAM 84 (221)
T ss_dssp CEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSCCSHHHHSHHHHHHHHHHHHHHHHHHHTHHHHTEEESCEEECHHHH
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCCCCeeecchhhhhhhhhHhHHHHHHHhhhhhhcCeecccceecHHHH
Confidence 5899999999999999999999999999987653110 00
Q ss_pred --------HHHHHHHHHHHHhcCcEEEcCcccEEEEEcCCceEEE--EECCCeEEEeeEEEEecCcCCC
Q 008860 286 --------EDIRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSV--KTNKGTVDGFSHVMFATGRRPN 344 (551)
Q Consensus 286 --------~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V--~~~~G~~i~~d~vi~a~G~~p~ 344 (551)
..+.+.+...++..+|+++.... .+.. ... ..+ ...+...+.+|.||+|||.+|.
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~--~~~~-~~~-~~~~~~~~~~~~~~a~~VIiATGs~~~ 149 (221)
T d1dxla1 85 MGQKDKAVSNLTRGIEGLFKKNKVTYVKGYG--KFVS-PSE-ISVDTIEGENTVVKGKHIIIATGSDVK 149 (221)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCEEEESCE--EEEE-TTE-EEECCSSSCCEEEECSEEEECCCEEEC
T ss_pred HHHHHHHHHHHhhHHHHhhhcCCeEEEEecc--cccc-ccc-cccccccccccccccceEEEeECCCcc
Confidence 01122344556777888875521 1211 111 222 2234457899999999999875
|
| >d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Cholesterol oxidase of GMC family species: Brevibacterium sterolicum [TaxId: 1702]
Probab=97.64 E-value=1.5e-05 Score=78.10 Aligned_cols=33 Identities=27% Similarity=0.376 Sum_probs=31.4
Q ss_pred CCccEEEECCChHHHHHHHHHHhCCCcEEEEcc
Q 008860 71 YDFDLFTIGAGSGGVRASRFAANFGASVAICEL 103 (551)
Q Consensus 71 ~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~ 103 (551)
.++||||||+|++|+.+|.+|+++|++|+|+|+
T Consensus 6 ~~~dvIVVGsG~aG~v~A~rLaeaG~~VlvLEa 38 (370)
T d3coxa1 6 DRVPALVIGSGYGGAVAALRLTQAGIPTQIVEM 38 (370)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHHTTCCEEEECS
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCeEEEEeC
Confidence 469999999999999999999999999999994
|
| >d1lqta1 c.3.1.1 (A:109-324) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Ferredoxin:NADP reductase FprA species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.59 E-value=0.00034 Score=62.48 Aligned_cols=57 Identities=23% Similarity=0.321 Sum_probs=40.3
Q ss_pred CCCCCCCC--ceecchhhhc------------CCCCCCeEEEEcCcHHHHHHHHHHH--------------------hCC
Q 008860 223 IPDIPGSE--YAIDSDAALD------------LPSKPEKIAIVGGGYIALEFAGIFS--------------------GLT 268 (551)
Q Consensus 223 ~p~i~g~~--~~~~~~~~~~------------~~~~~~~vvViG~G~~g~e~a~~l~--------------------~~g 268 (551)
.++|||.+ .++..-+++. ....+++|+|||+|.+|+++|..+. +.|
T Consensus 3 ~L~IPGedl~gV~~A~dfl~~~N~~p~~~~~~~~~~gk~VvVIGgGNvAlD~AR~ll~~~~~l~~tdi~~~~l~~l~r~~ 82 (216)
T d1lqta1 3 MLNIPGEDLPGSIAAVDFVGWYNAHPHFEQVSPDLSGARAVVIGNGNVALDVARILLTDPDVLARTDIADHALESLRPRG 82 (216)
T ss_dssp CCCCTTTTSTTEEEHHHHHHHHTTCGGGTTCCCCCCSSEEEEECCSHHHHHHHHHHHSCHHHHTTSCCCHHHHHHHTTCC
T ss_pred CCCCCCCCCCCcEeHHHHHHHHhCCccccccCccccCceEEEECCCchhHhhhhhhccCHhhhccCCCcHHHHHHHhhcC
Confidence 45678854 4555555442 1123689999999999999998776 455
Q ss_pred C-eEEEEeecCc
Q 008860 269 S-EVHVFIRQKK 279 (551)
Q Consensus 269 ~-~Vtlv~~~~~ 279 (551)
. +|+++.|+..
T Consensus 83 ~~~V~iv~RRg~ 94 (216)
T d1lqta1 83 IQEVVIVGRRGP 94 (216)
T ss_dssp CCEEEEECSSCG
T ss_pred CceEEEEEECCh
Confidence 4 7999988754
|
| >d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Adrenodoxin reductase of mitochondrial p450 systems species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.55 E-value=2.1e-05 Score=71.50 Aligned_cols=91 Identities=14% Similarity=0.189 Sum_probs=64.4
Q ss_pred CeEEEEcCcHHHHHHHHHHHhC--CCeEEEEeecCccC--------CC--CCHHHHHHHHHHHHhcCcEEEcCcccEEEE
Q 008860 246 EKIAIVGGGYIALEFAGIFSGL--TSEVHVFIRQKKVL--------RG--FDEDIRDFVAEQMSLRGIEFHTEESPQAIL 313 (551)
Q Consensus 246 ~~vvViG~G~~g~e~a~~l~~~--g~~Vtlv~~~~~~l--------~~--~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~ 313 (551)
.+|+|||+|+.|+.+|..|++. |.+|+++++.+.+. +. ....+.......+++.|++++.++.|..
T Consensus 2 ~kv~iIGaGpaGl~aA~~L~~~~~~~~V~v~e~~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-- 79 (230)
T d1cjca2 2 PQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVPFGLVRFGVAPDHPEVKNVINTFTQTARSDRCAFYGNVEVGR-- 79 (230)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSSSCTHHHHTSCTTCGGGGGHHHHHHHHHTSTTEEEEBSCCBTT--
T ss_pred CeEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCceehhhccccccccccchhhhhhhhhcCCeeEEeeEEeCc--
Confidence 3799999999999999999764 78999999988652 11 2334456667778889999999877621
Q ss_pred EcCCceEEEEECCCeEEEeeEEEEecCcCCCCC
Q 008860 314 KSTDGSLSVKTNKGTVDGFSHVMFATGRRPNTK 346 (551)
Q Consensus 314 ~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~~~ 346 (551)
+ +...+= .-.+|.+++|+|..+...
T Consensus 80 ---~----~~~~~l-~~~~d~v~~a~Ga~~~~~ 104 (230)
T d1cjca2 80 ---D----VTVQEL-QDAYHAVVLSYGAEDKSR 104 (230)
T ss_dssp ---T----BCHHHH-HHHSSEEEECCCCCEECC
T ss_pred ---c----ccHHHH-HhhhceEEEEeecccccc
Confidence 1 000000 124799999999976544
|
| >d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Trimethylamine dehydrogenase, C-terminal domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=97.55 E-value=0.00044 Score=58.22 Aligned_cols=29 Identities=14% Similarity=0.040 Sum_probs=26.6
Q ss_pred cEEEE--CCChHHHHHHHHHHhCCCcEEEEc
Q 008860 74 DLFTI--GAGSGGVRASRFAANFGASVAICE 102 (551)
Q Consensus 74 dVvII--GgG~aGl~aA~~l~~~G~~V~liE 102 (551)
.++|| |||..|+.+|..|++.|.+|+||+
T Consensus 41 ~vvi~d~ggg~ig~e~A~~la~~G~~Vtlv~ 71 (156)
T d1djqa2 41 RVVILNADTYFMAPSLAEKLATAGHEVTIVS 71 (156)
T ss_dssp EEEEEECCCSSHHHHHHHHHHHTTCEEEEEE
T ss_pred ceEEEecCCChHHHHHHHHHHHcCCeEEEEe
Confidence 45555 999999999999999999999999
|
| >d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Probab=97.52 E-value=0.00021 Score=63.82 Aligned_cols=93 Identities=14% Similarity=0.165 Sum_probs=63.6
Q ss_pred eEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccC----------------------------C---------CCC-H--
Q 008860 247 KIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVL----------------------------R---------GFD-E-- 286 (551)
Q Consensus 247 ~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l----------------------------~---------~~~-~-- 286 (551)
.|+|||+|+.|+++|..++++|.+|.++++.. +. . .++ +
T Consensus 4 DvvVIG~G~aG~~aA~~a~~~G~kV~iiE~~~-~GGtc~~~gc~p~k~l~~~a~~~~~~~~~~~~~g~~~~~~~~~~~~~ 82 (217)
T d1gesa1 4 DYIAIGGGSGGIASINRAAMYGQKCALIEAKE-LGGTCVNVGCVPKKVMWHAAQIREAIHMYGPDYGFDTTINKFNWETL 82 (217)
T ss_dssp EEEEECCSHHHHHHHHHHHTTTCCEEEEESSC-TTHHHHHHSHHHHHHHHHHHHHHHHHHTTGGGGTEEEEEEEECHHHH
T ss_pred CEEEECCCHHHHHHHHHHHHCCCEEEEEeccC-cCCeEecccccccccchhhHHHHHHHHhhhhhcCccCCcccccHHHH
Confidence 48999999999999999999999999999753 10 0 000 0
Q ss_pred ---------HHHHHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCcCCCCCC
Q 008860 287 ---------DIRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNTKN 347 (551)
Q Consensus 287 ---------~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~~~~ 347 (551)
.+...+...+++.||++......... .. ....+++.+.++.+++|+|..|....
T Consensus 83 ~~~~~~~v~~~~~~~~~~l~~~gV~v~~~~~~~~~---~~----~~~~~~~~~~~~~~iiatG~~p~ip~ 145 (217)
T d1gesa1 83 IASRTAYIDRIHTSYENVLGKNNVDVIKGFARFVD---AK----TLEVNGETITADHILIATGGRPSHPR 145 (217)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCEEEESCCEEEE---TT----EEEETTEEEEEEEEEECCCEEECCCE
T ss_pred HHHHHHHHHHHHHHHHHHHhCCeEEEEeeecccce---ee----eecCCCceeeeeeeeeecCccccCCC
Confidence 11122344567778888766443222 11 12346678999999999999987653
|
| >d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: p-Hydroxybenzoate hydroxylase, PHBH species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.51 E-value=0.00021 Score=66.87 Aligned_cols=34 Identities=21% Similarity=0.327 Sum_probs=31.7
Q ss_pred CeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCc
Q 008860 246 EKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKK 279 (551)
Q Consensus 246 ~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~ 279 (551)
.+|+|||+|+.|+-+|..|++.|.+|+++++.+.
T Consensus 3 ~~V~IvGaGp~Gl~~A~~L~~~G~~v~vlE~~~~ 36 (292)
T d1k0ia1 3 TQVAIIGAGPSGLLLGQLLHKAGIDNVILERQTP 36 (292)
T ss_dssp CSEEEECCSHHHHHHHHHHHHHTCCEEEECSSCH
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence 3799999999999999999999999999999864
|
| >d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Cholesterol oxidase of GMC family species: Streptomyces sp. [TaxId: 1931]
Probab=97.49 E-value=2.7e-05 Score=76.04 Aligned_cols=31 Identities=19% Similarity=0.294 Sum_probs=29.9
Q ss_pred ccEEEECCChHHHHHHHHHHhCCCcEEEEcc
Q 008860 73 FDLFTIGAGSGGVRASRFAANFGASVAICEL 103 (551)
Q Consensus 73 ~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~ 103 (551)
.||||||+|++|+.+|.+|+++|++|+|+|+
T Consensus 3 v~VIVVGsG~aG~v~A~rLaeaG~~VlvLEa 33 (367)
T d1n4wa1 3 VPAVVIGTGYGAAVSALRLGEAGVQTLMLEM 33 (367)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEEES
T ss_pred CeEEEeCcCHHHHHHHHHHHHCcCeEEEEec
Confidence 6999999999999999999999999999994
|
| >d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]
Probab=97.47 E-value=3.2e-05 Score=75.46 Aligned_cols=32 Identities=31% Similarity=0.544 Sum_probs=30.7
Q ss_pred CccEEEECCChHHHHHHHHHHhCCCcEEEEcc
Q 008860 72 DFDLFTIGAGSGGVRASRFAANFGASVAICEL 103 (551)
Q Consensus 72 ~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~ 103 (551)
.||+||||+|+||+.+|.+|++.|.+|+|+|+
T Consensus 2 ~YD~IIVGsG~aG~v~A~rLae~g~~VlvLEa 33 (360)
T d1kdga1 2 PYDYIIVGAGPGGIIAADRLSEAGKKVLLLER 33 (360)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTTCCEEEECS
T ss_pred cCCEEEECcCHHHHHHHHHHhhCCCeEEEEEc
Confidence 59999999999999999999999999999994
|
| >d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Trimethylamine dehydrogenase, middle domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=97.47 E-value=1.7e-05 Score=72.25 Aligned_cols=143 Identities=18% Similarity=0.178 Sum_probs=79.0
Q ss_pred CCCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCCCC---------C--HHHHHHHHHHHHhcCcEEEcCcccEE
Q 008860 243 SKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGF---------D--EDIRDFVAEQMSLRGIEFHTEESPQA 311 (551)
Q Consensus 243 ~~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~~~---------~--~~~~~~l~~~l~~~Gv~i~~~~~v~~ 311 (551)
..+++|+|||+|+.|+.+|..|++.|.+|+++++.+.+...+ . ..........+.+.+..... ..
T Consensus 47 ~~~k~VvIIGaGpAGl~aA~~l~~~G~~v~l~E~~~~~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~ 122 (233)
T d1djqa3 47 KNKDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEKIGGHLNQVAALPGLGEWSYHRDYRETQITKLLKKNKE----SQ 122 (233)
T ss_dssp SSCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTTHHHHTTSTTCGGGGHHHHHHHHHHHHHHTTCTT----CE
T ss_pred cCCceEEEEcccHHHHHHHHHHHHhccceeeEeeccccCCccccccccceeecccccchhHHHHHHHHhhccee----ee
Confidence 457899999999999999999999999999999988763211 0 11222233333332211110 01
Q ss_pred EEEcCCceEEEEECCCeEEEeeEEEEecCcCCCCCCCCccccCeeecCCCCeEeCCCCCCCCCcEEEeCcCCCCCCChHH
Q 008860 312 ILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNTKNLGLEKVGVKMTKNGAIEVDEYSGTAVPSIWAVGDVTDRINLTPV 391 (551)
Q Consensus 312 i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~t~~~~vya~GD~~~~~~~~~~ 391 (551)
+.... . .+...+..++.+|.||+|||..+....+.... ..+ ... .....+++..++... .-....
T Consensus 123 ~~~~~-~--~~~~~~~~~~~~d~vviAtG~~~~~~~~~~~~------~~~-~~~----~~~~~~~~~~~~~~~-~vvViG 187 (233)
T d1djqa3 123 LALGQ-K--PMTADDVLQYGADKVIIATGASECTLWNELKA------RES-EWA----ENDIKGIYLIGDAEA-PRLIAD 187 (233)
T ss_dssp EECSC-C--CCCHHHHHTSCCSEEEECCCEECCHHHHHHHH------TTH-HHH----HTTCCEEEECGGGTS-CCCHHH
T ss_pred eeccc-c--cccchhhhhhccceeeeccCCCcccccccccc------ccc-ccc----hhhhhhhhhccccCC-ceeEec
Confidence 11111 1 01222233467999999999987654211110 111 111 113456777776433 334445
Q ss_pred HHHhHHHHHHHHc
Q 008860 392 ALMEGGALAKTLF 404 (551)
Q Consensus 392 A~~~g~~aa~~i~ 404 (551)
+-..|.-+|..+.
T Consensus 188 gG~~g~e~A~~l~ 200 (233)
T d1djqa3 188 ATFTGHRVAREIE 200 (233)
T ss_dssp HHHHHHHHHHTTT
T ss_pred CchHHHHHHHHHH
Confidence 5566666666655
|
| >d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Ferredoxin:NADP reductase FprA species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.35 E-value=1.7e-05 Score=72.25 Aligned_cols=92 Identities=16% Similarity=0.141 Sum_probs=66.6
Q ss_pred CCeEEEEcCcHHHHHHHHHHHhCC-------CeEEEEeecCccC--------CC--CCHHHHHHHHHHHHhcCcEEEcCc
Q 008860 245 PEKIAIVGGGYIALEFAGIFSGLT-------SEVHVFIRQKKVL--------RG--FDEDIRDFVAEQMSLRGIEFHTEE 307 (551)
Q Consensus 245 ~~~vvViG~G~~g~e~a~~l~~~g-------~~Vtlv~~~~~~l--------~~--~~~~~~~~l~~~l~~~Gv~i~~~~ 307 (551)
|.+|+|||+|+.|+.+|..|.+.| .+|+++++.+.+. +. ....+.+...+.+.+.|+++++++
T Consensus 2 p~~VaVIGaGpaGL~aA~~L~~~G~~~~~~~~~V~v~E~~~~~GG~~~~gi~p~~~~~~~~~~~~~~~~~~~g~~~~~~~ 81 (239)
T d1lqta2 2 PYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPWGLVRSGVAPDHPKIKSISKQFEKTAEDPRFRFFGNV 81 (239)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSSCSTHHHHTSCTTCTGGGGGHHHHHHHHTSTTEEEEESC
T ss_pred CcEEEEECcCHHHHHHHHHHHHcCCccccCCCceEEEecCCCCCCeeeeccCcccccchhhhhhhhhhhccCCceEEEEE
Confidence 569999999999999999998876 5899999987542 21 234556667778889999999997
Q ss_pred ccEEEEEcCCceEEEEECCCeEEEeeEEEEecCcCCCCC
Q 008860 308 SPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNTK 346 (551)
Q Consensus 308 ~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~~~ 346 (551)
.+.... ...+ -...+|.|++|+|..+...
T Consensus 82 ~v~~~~---------~~~~-~~~~~~~v~~atGa~~~~~ 110 (239)
T d1lqta2 82 VVGEHV---------QPGE-LSERYDAVIYAVGAQSRGV 110 (239)
T ss_dssp CBTTTB---------CHHH-HHHHSSEEEECCCCCEECC
T ss_pred Eecccc---------chhh-hhccccceeeecCCCcccc
Confidence 652210 0000 0135799999999876543
|
| >d1ju2a1 c.3.1.2 (A:1-293,A:464-521) Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxId: 3755]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Hydroxynitrile lyase species: Almond (Prunus dulcis) [TaxId: 3755]
Probab=97.25 E-value=5.3e-05 Score=73.54 Aligned_cols=35 Identities=17% Similarity=0.246 Sum_probs=31.0
Q ss_pred CCCCCccEEEECCChHHHHHHHHHHhCCCcEEEEcc
Q 008860 68 PSHYDFDLFTIGAGSGGVRASRFAANFGASVAICEL 103 (551)
Q Consensus 68 ~~~~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~ 103 (551)
++...||+||||||+||+.+|.+|++. ++|+|||+
T Consensus 22 ~~~~~YD~IIVGsG~aG~vlA~rLae~-~kVLvLEa 56 (351)
T d1ju2a1 22 ELEGSYDYVIVGGGTSGCPLAATLSEK-YKVLVLER 56 (351)
T ss_dssp CSEEEEEEEEECCSTTHHHHHHHHTTT-SCEEEECS
T ss_pred cccCCccEEEECccHHHHHHHHHhcCC-CCEEEEec
Confidence 344569999999999999999999986 99999993
|
| >d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Glucose oxidase species: Penicillium amagasakiense [TaxId: 63559]
Probab=97.22 E-value=8.1e-05 Score=73.32 Aligned_cols=32 Identities=19% Similarity=0.272 Sum_probs=30.0
Q ss_pred CccEEEECCChHHHHHHHHHHhCC-CcEEEEcc
Q 008860 72 DFDLFTIGAGSGGVRASRFAANFG-ASVAICEL 103 (551)
Q Consensus 72 ~~dVvIIGgG~aGl~aA~~l~~~G-~~V~liE~ 103 (551)
.||+||||||+||+.+|.+|++.| .+|+|||+
T Consensus 24 tyD~IIVGsG~aG~vlA~rLae~~~~~VLlLEa 56 (391)
T d1gpea1 24 TYDYIIAGGGLTGLTVAAKLTENPKIKVLVIEK 56 (391)
T ss_dssp EEEEEEECCSHHHHHHHHHHHTSTTCCEEEEES
T ss_pred eeeEEEECcCHHHHHHHHHHHHCCCCeEEEEcC
Confidence 599999999999999999999987 79999994
|
| >d1cf3a1 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Aspergillus niger [TaxId: 5061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Glucose oxidase species: Aspergillus niger [TaxId: 5061]
Probab=97.17 E-value=8.8e-05 Score=72.89 Aligned_cols=32 Identities=22% Similarity=0.249 Sum_probs=29.6
Q ss_pred CccEEEECCChHHHHHHHHHHhCC-CcEEEEcc
Q 008860 72 DFDLFTIGAGSGGVRASRFAANFG-ASVAICEL 103 (551)
Q Consensus 72 ~~dVvIIGgG~aGl~aA~~l~~~G-~~V~liE~ 103 (551)
.||+||||||+||+.+|.+|++.+ ++|+|+|+
T Consensus 17 tyD~IIVGsG~aG~vlA~rLse~~~~~VLvLEa 49 (385)
T d1cf3a1 17 TVDYIIAGGGLTGLTTAARLTENPNISVLVIES 49 (385)
T ss_dssp EEEEEEECCSHHHHHHHHHHTTSTTCCEEEEES
T ss_pred eEEEEEECcCHHHHHHHHHHHHCCCCeEEEECC
Confidence 599999999999999999999865 89999994
|
| >d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=97.14 E-value=0.0015 Score=58.23 Aligned_cols=33 Identities=21% Similarity=0.094 Sum_probs=30.3
Q ss_pred CCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeec
Q 008860 245 PEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQ 277 (551)
Q Consensus 245 ~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~ 277 (551)
...++|||+|+.|+++|..++++|.+|+++++.
T Consensus 5 ~~DlvVIG~GpaGl~aA~~aa~~G~~V~liE~~ 37 (220)
T d1lvla1 5 QTTLLIIGGGPGGYVAAIRAGQLGIPTVLVEGQ 37 (220)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHHTCCEEEECSS
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCCcEEEEecC
Confidence 347999999999999999999999999999864
|
| >d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: 2,4-dienoyl-CoA reductase, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.10 E-value=0.00047 Score=58.42 Aligned_cols=28 Identities=21% Similarity=0.313 Sum_probs=24.6
Q ss_pred ccEEEECCChHHHHHHHHHHhCCCcEEE
Q 008860 73 FDLFTIGAGSGGVRASRFAANFGASVAI 100 (551)
Q Consensus 73 ~dVvIIGgG~aGl~aA~~l~~~G~~V~l 100 (551)
.+|+|||||..|+-+|..+++.|.+++.
T Consensus 30 krVvVIGgG~~g~d~a~~~~r~G~~~~~ 57 (162)
T d1ps9a2 30 NKVAIIGCGGIGFDTAMYLSQPGESTSQ 57 (162)
T ss_dssp SEEEEECCHHHHHHHHHHHTCCSSCGGG
T ss_pred CceEEEcCchhHHHHHHHHHHcCCccce
Confidence 5899999999999999999999975433
|
| >d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=97.09 E-value=3.4e-05 Score=70.36 Aligned_cols=29 Identities=24% Similarity=0.123 Sum_probs=25.8
Q ss_pred cEEEECCChHHHHHHHHHHhCCCcEEEEc
Q 008860 74 DLFTIGAGSGGVRASRFAANFGASVAICE 102 (551)
Q Consensus 74 dVvIIGgG~aGl~aA~~l~~~G~~V~liE 102 (551)
+|+|||||++|+++|++|+++|.+|+++|
T Consensus 2 kV~VIGaGi~GlstA~~L~~~G~~v~v~e 30 (246)
T d1kifa1 2 RVVVIGAGVIGLSTALCIHERYHSVLQPL 30 (246)
T ss_dssp EEEEECCSHHHHHHHHHHHHHHTTTSSSC
T ss_pred EEEEECchHHHHHHHHHHHHCCCCceEEe
Confidence 69999999999999999999998765555
|
| >d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Mammalian thioredoxin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.06 E-value=0.0018 Score=58.19 Aligned_cols=97 Identities=20% Similarity=0.228 Sum_probs=66.6
Q ss_pred eEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCC--------------------------------------------
Q 008860 247 KIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLR-------------------------------------------- 282 (551)
Q Consensus 247 ~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~-------------------------------------------- 282 (551)
.|+|||+|+.|+.+|..+++.|.+|.+++..+....
T Consensus 5 DviVIG~GpaGl~aA~~aa~~G~kV~viE~~~~~~~~~~~~~GG~c~~~g~~~~k~l~~~~~~~~~~~~~~~~gi~~~~~ 84 (235)
T d1h6va1 5 DLIIIGGGSGGLAAAKEAAKFDKKVMVLDFVTPTPLGTNWGLGGTCVNVGCIPKKLMHQAALLGQALKDSRNYGWKLEDT 84 (235)
T ss_dssp EEEEECCSHHHHHHHHHHGGGCCCEEEECCCCCCTTCCCCCTTHHHHHHSHHHHHHHHHHHHHHHHHHHTTTTTBCCCSC
T ss_pred CEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCcccccccccccccccccchhhhhhhhhhhhHhhhhhccccccccc
Confidence 589999999999999999999999999995432100
Q ss_pred -CCC-H-----------HHHHHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEECCCe--EEEeeEEEEecCcCCCCCC
Q 008860 283 -GFD-E-----------DIRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTNKGT--VDGFSHVMFATGRRPNTKN 347 (551)
Q Consensus 283 -~~~-~-----------~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~G~--~i~~d~vi~a~G~~p~~~~ 347 (551)
..+ . .+.+.+...+++++|+++.+... +. ..+ ...+...+++ .+.++.+++++|.+|....
T Consensus 85 ~~~d~~~~~~~~~~~i~~l~~g~~~~l~~~~V~vi~G~~~--~~-~~~-~~~v~~~~~~~~~i~a~~ivi~~G~~p~~~~ 160 (235)
T d1h6va1 85 VKHDWEKMTESVQNHIGSLNWGYRVALREKKVVYENAYGK--FI-GPH-KIMATNNKGKEKVYSAERFLIATGERPRYLG 160 (235)
T ss_dssp CCBCHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEECCEEE--EE-ETT-EEEEECTTSCEEEEEEEEEEECCCEEECCCS
T ss_pred eeechhhhhheeeeeeeeccchhhhhhhccCceEEEeEEe--ec-ccc-ceecccccccccccccccceeecCCCceeEE
Confidence 000 0 01122445667889999877432 22 222 2556666654 5889999999999998754
|
| >d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.01 E-value=0.0011 Score=59.81 Aligned_cols=100 Identities=19% Similarity=0.214 Sum_probs=64.4
Q ss_pred eEEEEcCcHHHHHHHHHHHhCC---CeEEEEeecCc--------------c---------C---CC-----------CC-
Q 008860 247 KIAIVGGGYIALEFAGIFSGLT---SEVHVFIRQKK--------------V---------L---RG-----------FD- 285 (551)
Q Consensus 247 ~vvViG~G~~g~e~a~~l~~~g---~~Vtlv~~~~~--------------~---------l---~~-----------~~- 285 (551)
+|+|||+|+.|+.+|..+++++ .+|.++++... + + .. ++
T Consensus 3 ~viVIG~GpaG~~aA~~aa~~~~~~~~V~liEk~~~GG~cln~GciPsK~ll~~a~~~~~~~~~~~~G~~i~~~~~~~d~ 82 (233)
T d1xdia1 3 RIVILGGGPAGYEAALVAATSHPETTQVTVIDCDGIGGAAVLDDCVPSKTFIASTGLRTELRRAPHLGFHIDFDDAKISL 82 (233)
T ss_dssp EEEEECCSHHHHHHHHHHHHHCTTTEEEEEEESSCTTHHHHHTSHHHHHHHHHHHHHHHHHTTTTTTTBC------CBCH
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCCCEEEEEecCCCCceeecccccccEEEEeecchhhhhhhhhhcCCcccccCceeee
Confidence 7999999999999998877665 57999986430 0 0 00 00
Q ss_pred H-----------HHHHHHHHHHHhcCcEEEcCcccEEEEEc---CCceEEEEECCCe--EEEeeEEEEecCcCCCCCC
Q 008860 286 E-----------DIRDFVAEQMSLRGIEFHTEESPQAILKS---TDGSLSVKTNKGT--VDGFSHVMFATGRRPNTKN 347 (551)
Q Consensus 286 ~-----------~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~---~~~~~~V~~~~G~--~i~~d~vi~a~G~~p~~~~ 347 (551)
+ .....+.+.++.+||+++.+... -+... ....+.+...+|+ ++++|.+++|+|..|....
T Consensus 83 ~~~~~~~~~v~~~~~~~~~~~~~~~gV~vi~G~~~-~~~~~~~~~~~~v~v~~~dg~~~~i~ad~viiAtG~~p~~~~ 159 (233)
T d1xdia1 83 PQIHARVKTLAAAQSADITAQLLSMGVQVIAGRGE-LIDSTPGLARHRIKATAADGSTSEHEADVVLVATGASPRILP 159 (233)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESEEE-ECCSSSCCSSEEEEEECTTSCEEEEEESEEEECCCEEECCCG
T ss_pred eeeccccceeeeeeecceehhhcccceeEEECccc-ccccccccccceEEEEecCCceeeeecceeeeecCccccccc
Confidence 0 11122455678889999877321 11111 1123556666775 6899999999999998653
|
| >d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Azotobacter vinelandii [TaxId: 354]
Probab=96.95 E-value=0.0036 Score=55.55 Aligned_cols=32 Identities=16% Similarity=0.106 Sum_probs=29.5
Q ss_pred eEEEEcCcHHHHHHHHHHHhCCCeEEEEeecC
Q 008860 247 KIAIVGGGYIALEFAGIFSGLTSEVHVFIRQK 278 (551)
Q Consensus 247 ~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~ 278 (551)
.++|||+|+.|+.+|..+++.|.+|.++++..
T Consensus 5 DviIIGgGpAGl~aA~~aar~G~~V~viE~~~ 36 (229)
T d3lada1 5 DVIVIGAGPGGYVAAIKSAQLGLKTALIEKYK 36 (229)
T ss_dssp SEEEECCSHHHHHHHHHHHHHTCCEEEEECCB
T ss_pred CEEEECcCHHHHHHHHHHHHCCCeEEEEeccc
Confidence 48999999999999999999999999998643
|
| >d1jnra2 c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reductase A subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Adenylylsulfate reductase A subunit species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=96.87 E-value=0.011 Score=56.42 Aligned_cols=32 Identities=22% Similarity=0.184 Sum_probs=26.6
Q ss_pred eEEEEcCcHHHHHHHHHHH----hCCCeEEEEeecC
Q 008860 247 KIAIVGGGYIALEFAGIFS----GLTSEVHVFIRQK 278 (551)
Q Consensus 247 ~vvViG~G~~g~e~a~~l~----~~g~~Vtlv~~~~ 278 (551)
.|+|||+|..|+-.|..++ +.|.+|.++++.+
T Consensus 23 DVlIIG~G~AGl~AA~~aa~~~~~~G~~V~vieK~~ 58 (356)
T d1jnra2 23 DILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEKAA 58 (356)
T ss_dssp SEEEECCSHHHHHHHHHHHHHHTTTTCCEEEECSSC
T ss_pred CEEEECCCHHHHHHHHHHHHHHHhCcCEEEEEeCCC
Confidence 6999999999988887765 4699999998643
|
| >d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.71 E-value=0.0031 Score=55.85 Aligned_cols=96 Identities=18% Similarity=0.161 Sum_probs=63.9
Q ss_pred CeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCcc-----------------------------------CCCCCH----
Q 008860 246 EKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKV-----------------------------------LRGFDE---- 286 (551)
Q Consensus 246 ~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~-----------------------------------l~~~~~---- 286 (551)
..++|||+|+.|+++|..+++.|.+|+++++...- ...++.
T Consensus 4 ~DviVIG~GpaGl~aA~~aar~G~kV~vIEk~~~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (223)
T d1ebda1 4 TETLVVGAGPGGYVAAIRAAQLGQKVTIVEKGNLGGVCLNVGCIPSKALISASHRYEQAKHSEEMGIKAENVTIDFAKVQ 83 (223)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCEEEEESSCTTHHHHHTSHHHHHHHHHHHHHHHHHHTCGGGTEECCSCEECHHHHH
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCEEEEEecCCCCcceeccccccccccccccchhhhhhhhhhhcccchhheeeHHHHh
Confidence 35899999999999999999999999999865310 000111
Q ss_pred --------HHHHHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEECC-CeEEEeeEEEEecCcCCCC
Q 008860 287 --------DIRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTNK-GTVDGFSHVMFATGRRPNT 345 (551)
Q Consensus 287 --------~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~-G~~i~~d~vi~a~G~~p~~ 345 (551)
.+...+...++..||+++.+.. ++... .. ..+...+ +..+.++.+|+|+|..|..
T Consensus 84 ~~~~~~v~~l~~~~~~~~~~~~V~~i~G~a--~f~~~-~~-~~v~~~~~~~~~~~~~iiIa~g~~p~~ 147 (223)
T d1ebda1 84 EWKASVVKKLTGGVEGLLKGNKVEIVKGEA--YFVDA-NT-VRVVNGDSAQTYTFKNAIIATGSRPIE 147 (223)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTCEEEESEE--EEEET-TE-EEEEETTEEEEEECSEEEECCCEEECC
T ss_pred hHHHHHHHHHHhhHHHhhhccceeeeccEE--EEccC-cc-cceeccccceEEecccEEEEcCCCccc
Confidence 1122234456778999887732 23322 22 4444443 4578999999999998865
|
| >d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.58 E-value=0.0044 Score=54.83 Aligned_cols=95 Identities=20% Similarity=0.250 Sum_probs=62.7
Q ss_pred eEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCc-------------------------------cCC----CCCH-----
Q 008860 247 KIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKK-------------------------------VLR----GFDE----- 286 (551)
Q Consensus 247 ~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~-------------------------------~l~----~~~~----- 286 (551)
.++|||+|+.|+++|..++++|.+|.++++... ... .++.
T Consensus 5 DviIIG~GpaG~~aA~~aar~G~kV~vIEk~~~GG~c~n~g~~~~k~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (221)
T d3grsa1 5 DYLVIGGGSGGLASARRAAELGARAAVVESHKLGGTCVNVGCVPKKVMWNTAVHSEFMHDHADYGFPSCEGKFNWRVIKE 84 (221)
T ss_dssp SEEEECCSHHHHHHHHHHHHTTCCEEEEESSCTTHHHHHHSHHHHHHHHHHHHHHHHHHTTGGGTSCCCCCCCCHHHHHH
T ss_pred CEEEECCCHHHHHHHHHHHHCCCEEEEEeccCCCCccccchhhhhhhhhhHHHHHHHHhhhhhccccccccchhhhhhhh
Confidence 489999999999999999999999999986431 000 0111
Q ss_pred -------HHHHHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEECCCeEEEeeEEEEecCcCCCCC
Q 008860 287 -------DIRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTNKGTVDGFSHVMFATGRRPNTK 346 (551)
Q Consensus 287 -------~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~G~~i~~d~vi~a~G~~p~~~ 346 (551)
.+.....+.++..||+++.+..... ..+. .++... ...+.++.+++++|..|...
T Consensus 85 ~~~~~v~~~~~~~~~~~~~~gV~~i~G~a~~~---~~~~-~~~~~~-~~~~~~~~~~iatG~~p~vp 146 (221)
T d3grsa1 85 KRDAYVSRLNAIYQNNLTKSHIEIIRGHAAFT---SDPK-PTIEVS-GKKYTAPHILIATGGMPSTP 146 (221)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEEEESCCEEC---SCSS-CEEEET-TEEEECSCEEECCCEEECCC
T ss_pred hhheEEeeeccchhhhhccCceEEEEEeeeec---cccc-eeeeee-ccccccceeEEecCccccCC
Confidence 1112234567888999887642111 1111 233333 34689999999999998764
|
| >d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Thi4-like domain: Thiazole biosynthetic enzyme Thi4 species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]
Probab=96.56 E-value=0.0084 Score=55.21 Aligned_cols=99 Identities=12% Similarity=0.082 Sum_probs=68.1
Q ss_pred CeEEEEcCcHHHHHHHHHHHh-CCCeEEEEeecCccCC----------C-----CCH-----------------------
Q 008860 246 EKIAIVGGGYIALEFAGIFSG-LTSEVHVFIRQKKVLR----------G-----FDE----------------------- 286 (551)
Q Consensus 246 ~~vvViG~G~~g~e~a~~l~~-~g~~Vtlv~~~~~~l~----------~-----~~~----------------------- 286 (551)
..|+|||+|+.|+.+|..|++ .|.+|+++++.+.+-. . ...
T Consensus 34 ~DViVIGaGpaGL~aA~~LA~~~G~~V~vlE~~~~~GG~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 113 (278)
T d1rp0a1 34 TDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSPGGGAWLGGQLFSAMIVRKPAHLFLDEIGVAYDEQDTYVVVKHAA 113 (278)
T ss_dssp EEEEEECCSHHHHHHHHHHHTSTTSCEEEEESSSSCCTTTTCCSTTCCCEEEETTTHHHHHHHTCCCEECSSEEEESCHH
T ss_pred CCEEEECCCHHHHHHHHHHHHccCCeEEEEecCCCCCCceeecCEEcCHHHHhhhHHHHHHHcCCceecCCccceecccH
Confidence 469999999999999999976 5999999998874311 0 000
Q ss_pred -HHHHHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEE--------------CCCeEEEeeEEEEecCcCCC
Q 008860 287 -DIRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKT--------------NKGTVDGFSHVMFATGRRPN 344 (551)
Q Consensus 287 -~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~--------------~~G~~i~~d~vi~a~G~~p~ 344 (551)
.+...+.+.++..++.+..++.+..+...++....+.. .++..+.++.++.++|....
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~gv~~~~~~~~~~~~~~~~~~~~~~~a~~vv~a~G~~~~ 186 (278)
T d1rp0a1 114 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGNRVGGVVTNWALVAQNHHTQSCMDPNVMEAKIVVSSCGHDGP 186 (278)
T ss_dssp HHHHHHHHHHHTSTTEEEEETEEEEEEEEETTEEEEEEEEEHHHHTCTTTSSCCCCEEEEEEEEEECCCSSST
T ss_pred HHHHHHHHHHHHhCCCEEEeCCcceeeeecCCeEEEEEeccceeeeeecccccccceeeccceEEECcCCCcc
Confidence 11122344556678888888888887766654333321 13357899999999997543
|
| >d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: L-aminoacid oxidase species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]
Probab=96.40 E-value=0.0012 Score=62.63 Aligned_cols=42 Identities=29% Similarity=0.472 Sum_probs=36.8
Q ss_pred hcCCCCCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCcc
Q 008860 239 LDLPSKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKV 280 (551)
Q Consensus 239 ~~~~~~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~ 280 (551)
+.....|++|+|||+|..|+-+|..|++.|.+|+++++.+.+
T Consensus 24 ~~~~~~pkkV~IIGaG~aGLsaA~~L~~~G~~V~vlE~~~~~ 65 (370)
T d2iida1 24 LKATSNPKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASERP 65 (370)
T ss_dssp SCCCSSCCEEEEECCBHHHHHHHHHHHHHTCEEEEECSSSSS
T ss_pred CCCCCCCCeEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCC
Confidence 334456899999999999999999999999999999987754
|
| >d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=96.39 E-value=0.0014 Score=61.16 Aligned_cols=36 Identities=25% Similarity=0.304 Sum_probs=33.5
Q ss_pred CCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCcc
Q 008860 245 PEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKV 280 (551)
Q Consensus 245 ~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~ 280 (551)
+|+|+|||+|+.|+.+|..|++.|.+|+++++++++
T Consensus 1 ~KkV~IIGaG~aGL~aA~~La~~G~~V~vlE~~~~~ 36 (373)
T d1seza1 1 AKRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEGKA 36 (373)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTSCEEEEECSSSSS
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCCEEEEeCCCCC
Confidence 489999999999999999999999999999988764
|
| >d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD species: Escherichia coli [TaxId: 562]
Probab=96.27 E-value=0.0018 Score=49.00 Aligned_cols=30 Identities=20% Similarity=0.347 Sum_probs=29.0
Q ss_pred ccEEEECCChHHHHHHHHHHhCCCcEEEEc
Q 008860 73 FDLFTIGAGSGGVRASRFAANFGASVAICE 102 (551)
Q Consensus 73 ~dVvIIGgG~aGl~aA~~l~~~G~~V~liE 102 (551)
.+|+|||.|.+|+++|..|.+.|.+|+++|
T Consensus 6 K~v~ViGlG~sG~s~a~~L~~~g~~v~~~D 35 (93)
T d2jfga1 6 KNVVIIGLGLTGLSCVDFFLARGVTPRVMD 35 (93)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCCCEEEE
T ss_pred CEEEEEeECHHHHHHHHHHHHCCCEEEEee
Confidence 579999999999999999999999999999
|
| >d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Cholesterol oxidase of GMC family species: Streptomyces sp. [TaxId: 1931]
Probab=96.06 E-value=0.032 Score=53.23 Aligned_cols=31 Identities=16% Similarity=0.096 Sum_probs=29.5
Q ss_pred eEEEEcCcHHHHHHHHHHHhCCCeEEEEeec
Q 008860 247 KIAIVGGGYIALEFAGIFSGLTSEVHVFIRQ 277 (551)
Q Consensus 247 ~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~ 277 (551)
.|+|||+|+.|+-+|..|++.|.+|.+++++
T Consensus 4 ~VIVVGsG~aG~v~A~rLaeaG~~VlvLEaG 34 (367)
T d1n4wa1 4 PAVVIGTGYGAAVSALRLGEAGVQTLMLEMG 34 (367)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred eEEEeCcCHHHHHHHHHHHHCcCeEEEEecC
Confidence 5899999999999999999999999999986
|
| >d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Nicotinamide nucleotide transhydrogenase dI component species: Rhodospirillum rubrum [TaxId: 1085]
Probab=95.85 E-value=0.0033 Score=53.35 Aligned_cols=30 Identities=27% Similarity=0.436 Sum_probs=28.9
Q ss_pred ccEEEECCChHHHHHHHHHHhCCCcEEEEc
Q 008860 73 FDLFTIGAGSGGVRASRFAANFGASVAICE 102 (551)
Q Consensus 73 ~dVvIIGgG~aGl~aA~~l~~~G~~V~liE 102 (551)
-+|+|||+|.+|+.||..+.+.|.+|+++|
T Consensus 30 a~VvViGaGvaG~~Aa~~A~~lGA~V~v~D 59 (183)
T d1l7da1 30 ARVLVFGVGVAGLQAIATAKRLGAVVMATD 59 (183)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEC
T ss_pred cEEEEEcCcHHHHHHHHHHHHcCCEEEEEe
Confidence 479999999999999999999999999999
|
| >d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Cholesterol oxidase of GMC family species: Brevibacterium sterolicum [TaxId: 1702]
Probab=95.80 E-value=0.023 Score=54.35 Aligned_cols=31 Identities=13% Similarity=0.089 Sum_probs=29.4
Q ss_pred eEEEEcCcHHHHHHHHHHHhCCCeEEEEeec
Q 008860 247 KIAIVGGGYIALEFAGIFSGLTSEVHVFIRQ 277 (551)
Q Consensus 247 ~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~ 277 (551)
.++|||+|..|+-+|..|++.|.+|.+++++
T Consensus 9 dvIVVGsG~aG~v~A~rLaeaG~~VlvLEaG 39 (370)
T d3coxa1 9 PALVIGSGYGGAVAALRLTQAGIPTQIVEMG 39 (370)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred CEEEECcCHHHHHHHHHHHHCCCeEEEEeCC
Confidence 5899999999999999999999999999975
|
| >d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Lysine-specific histone demethylase 1, LSD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.75 E-value=0.0044 Score=58.55 Aligned_cols=37 Identities=24% Similarity=0.398 Sum_probs=34.0
Q ss_pred CCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCcc
Q 008860 244 KPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKV 280 (551)
Q Consensus 244 ~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~ 280 (551)
...+|+|||+|..|+-+|..|++.|.+|+++++++++
T Consensus 4 ~~~kViVIGaG~aGL~aA~~L~~~G~~V~VlEa~~r~ 40 (449)
T d2dw4a2 4 KTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRV 40 (449)
T ss_dssp CCCEEEEECCBHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCC
Confidence 3568999999999999999999999999999998765
|
| >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=95.75 E-value=0.0039 Score=52.09 Aligned_cols=30 Identities=30% Similarity=0.521 Sum_probs=29.1
Q ss_pred ccEEEECCChHHHHHHHHHHhCCCcEEEEc
Q 008860 73 FDLFTIGAGSGGVRASRFAANFGASVAICE 102 (551)
Q Consensus 73 ~dVvIIGgG~aGl~aA~~l~~~G~~V~liE 102 (551)
.+|+|||+|.+|+.|+..+.+.|.+|+++|
T Consensus 33 a~V~ViGaGvaG~~A~~~A~~lGA~V~~~D 62 (168)
T d1pjca1 33 GKVVILGGGVVGTEAAKMAVGLGAQVQIFD 62 (168)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEE
T ss_pred cEEEEECCChHHHHHHHHHhhCCCEEEEEe
Confidence 579999999999999999999999999999
|
| >d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Klebsiella pneumoniae [TaxId: 573]
Probab=95.69 E-value=0.0054 Score=57.73 Aligned_cols=38 Identities=21% Similarity=0.353 Sum_probs=34.9
Q ss_pred CCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCC
Q 008860 245 PEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLR 282 (551)
Q Consensus 245 ~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~ 282 (551)
.|+|+|||+|.+|+-+|..|++.|.+|+++++++++..
T Consensus 2 ~KKI~IIGaG~sGL~aA~~L~k~G~~V~viEk~~~iGG 39 (314)
T d2bi7a1 2 SKKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHIGG 39 (314)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSSG
T ss_pred CCEEEEECCcHHHHHHHHHHHhCCCCEEEEECCCCCcC
Confidence 47999999999999999999999999999999988643
|
| >d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Saccharopine reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=95.60 E-value=0.0041 Score=52.96 Aligned_cols=30 Identities=13% Similarity=0.169 Sum_probs=29.0
Q ss_pred ccEEEECCChHHHHHHHHHHhCCCcEEEEc
Q 008860 73 FDLFTIGAGSGGVRASRFAANFGASVAICE 102 (551)
Q Consensus 73 ~dVvIIGgG~aGl~aA~~l~~~G~~V~liE 102 (551)
..|+|||+|..|..+|.+|.+.|++|+|+|
T Consensus 3 K~IliiGaG~~G~~~a~~L~~~g~~V~v~d 32 (182)
T d1e5qa1 3 KSVLMLGSGFVTRPTLDVLTDSGIKVTVAC 32 (182)
T ss_dssp CEEEEECCSTTHHHHHHHHHTTTCEEEEEE
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEE
Confidence 579999999999999999999999999999
|
| >d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Rhodotorula gracilis [TaxId: 5286]
Probab=95.56 E-value=0.0057 Score=55.24 Aligned_cols=34 Identities=26% Similarity=0.458 Sum_probs=31.5
Q ss_pred CCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecC
Q 008860 245 PEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQK 278 (551)
Q Consensus 245 ~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~ 278 (551)
.++|+|||+|..|+-+|..|++.|.+|+++++..
T Consensus 6 ~~kVvVIGaGiaGl~~A~~L~~~G~~V~vier~~ 39 (268)
T d1c0pa1 6 QKRVVVLGSGVIGLSSALILARKGYSVHILARDL 39 (268)
T ss_dssp SCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred CCcEEEECccHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 4689999999999999999999999999999853
|
| >d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Myxococcus xanthus [TaxId: 34]
Probab=95.52 E-value=0.0048 Score=57.09 Aligned_cols=34 Identities=21% Similarity=0.392 Sum_probs=31.9
Q ss_pred eEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCcc
Q 008860 247 KIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKV 280 (551)
Q Consensus 247 ~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~ 280 (551)
+|+|||+|+.|+.+|..|++.|.+|+++++.+.+
T Consensus 2 ~V~IIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~ 35 (347)
T d2ivda1 2 NVAVVGGGISGLAVAHHLRSRGTDAVLLESSARL 35 (347)
T ss_dssp CEEEECCBHHHHHHHHHHHTTTCCEEEECSSSSS
T ss_pred eEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCC
Confidence 5899999999999999999999999999998765
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Probab=95.41 E-value=0.006 Score=52.19 Aligned_cols=30 Identities=27% Similarity=0.341 Sum_probs=28.9
Q ss_pred ccEEEECCChHHHHHHHHHHhCCCcEEEEc
Q 008860 73 FDLFTIGAGSGGVRASRFAANFGASVAICE 102 (551)
Q Consensus 73 ~dVvIIGgG~aGl~aA~~l~~~G~~V~liE 102 (551)
.+++|||+|..|+..|..|++.|++|.+++
T Consensus 2 k~iaIiGaG~~G~~~A~~l~~~G~~V~~~~ 31 (184)
T d1bg6a2 2 KTYAVLGLGNGGHAFAAYLALKGQSVLAWD 31 (184)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEC
T ss_pred CEEEEECccHHHHHHHHHHHHCCCEEEEEE
Confidence 469999999999999999999999999999
|
| >d1fcda2 c.3.1.5 (A:115-255) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]
Probab=95.36 E-value=0.0068 Score=49.59 Aligned_cols=82 Identities=12% Similarity=0.059 Sum_probs=53.0
Q ss_pred HHHHHHHHHHhCCC--eEEEEeecCccC--CCCCHHHHHHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEECCCeEEE
Q 008860 256 IALEFAGIFSGLTS--EVHVFIRQKKVL--RGFDEDIRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTNKGTVDG 331 (551)
Q Consensus 256 ~g~e~a~~l~~~g~--~Vtlv~~~~~~l--~~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~~G~~i~ 331 (551)
++.-++..|++.|. +|.++...+... +.+.+.+.+.+.+.+++.||+++.+.....+..+... ..+++.+|++++
T Consensus 54 ~a~l~~~~lr~~g~r~kv~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~~~v~vd~~~-~~~~~~~Ge~v~ 132 (141)
T d1fcda2 54 RASQVAYYLKAHKPMSKVIILDSSQTFSKQSQFSKGWERLYGFGTENAMIEWHPGPDSAVVKVDGGE-MMVETAFGDEFK 132 (141)
T ss_dssp HHHHHHHHHGGGCSCCCEEEECSCSSCTTHHHHHHHHHHHHCSTTSSCSEEEECSSTTCEEEEEETT-TEEEETTCCEEE
T ss_pred HHHHHHHHHHHcCCCCcEEEEecCCCCccCCcccHHHHHHHHHHHHhcCceeeecCCceEEeecCCc-EEEEeCCCcEEe
Confidence 34555667777765 577766554321 1123445566667778899999988754444333333 447889999999
Q ss_pred eeEEEEe
Q 008860 332 FSHVMFA 338 (551)
Q Consensus 332 ~d~vi~a 338 (551)
+|++++.
T Consensus 133 yD~l~vv 139 (141)
T d1fcda2 133 ADVINLI 139 (141)
T ss_dssp CSEEEEC
T ss_pred eeEEEeC
Confidence 9998863
|
| >d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Polyamine oxidase species: Maize (Zea mays) [TaxId: 4577]
Probab=95.36 E-value=0.0059 Score=55.24 Aligned_cols=34 Identities=15% Similarity=0.307 Sum_probs=31.3
Q ss_pred eEEEEcCcHHHHHHHHHHHhCCC-eEEEEeecCcc
Q 008860 247 KIAIVGGGYIALEFAGIFSGLTS-EVHVFIRQKKV 280 (551)
Q Consensus 247 ~vvViG~G~~g~e~a~~l~~~g~-~Vtlv~~~~~~ 280 (551)
+|+|||+|+.|+-+|..|++.|. +|+++++++.+
T Consensus 2 ~V~IIGaG~aGL~aA~~L~~~G~~~V~vlE~~~~~ 36 (347)
T d1b5qa1 2 RVIVVGAGMSGISAAKRLSEAGITDLLILEATDHI 36 (347)
T ss_dssp CEEEECCBHHHHHHHHHHHHTTCCCEEEECSSSSS
T ss_pred CEEEECCcHHHHHHHHHHHhCCCCcEEEEECCCCC
Confidence 59999999999999999999996 79999998765
|
| >d1w4xa2 c.3.1.5 (A:155-389) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Phenylacetone monooxygenase species: Thermobifida fusca [TaxId: 2021]
Probab=95.25 E-value=0.065 Score=47.11 Aligned_cols=31 Identities=26% Similarity=0.331 Sum_probs=28.2
Q ss_pred CccEEEECCChHHHHHHHHHHhCCCcEEEEc
Q 008860 72 DFDLFTIGAGSGGVRASRFAANFGASVAICE 102 (551)
Q Consensus 72 ~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE 102 (551)
..+|+|||+|..|.-+|..+++.+.+++++=
T Consensus 32 gK~V~VvG~G~Sa~dia~~~~~~~~~~~~~~ 62 (235)
T d1w4xa2 32 GQRVGVIGTGSSGIQVSPQIAKQAAELFVFQ 62 (235)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHHBSEEEEEE
T ss_pred CCEEEEECCCccHHHHHHHHHhhhccccccc
Confidence 4789999999999999999999988887775
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=95.05 E-value=0.0096 Score=48.00 Aligned_cols=30 Identities=13% Similarity=0.297 Sum_probs=28.7
Q ss_pred ccEEEECCChHHHHHHHHHHhCCCcEEEEc
Q 008860 73 FDLFTIGAGSGGVRASRFAANFGASVAICE 102 (551)
Q Consensus 73 ~dVvIIGgG~aGl~aA~~l~~~G~~V~liE 102 (551)
++|+|+|+|.-|...|..|.+.|++|++||
T Consensus 1 M~IvI~G~G~~G~~la~~L~~~g~~v~vid 30 (132)
T d1lssa_ 1 MYIIIAGIGRVGYTLAKSLSEKGHDIVLID 30 (132)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEE
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCcceec
Confidence 369999999999999999999999999999
|
| >d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Lactobacillus pentosus [TaxId: 1589]
Probab=94.80 E-value=0.011 Score=48.46 Aligned_cols=34 Identities=18% Similarity=0.209 Sum_probs=30.7
Q ss_pred CCCCccEEEECCChHHHHHHHHHHhCC--CcEEEEc
Q 008860 69 SHYDFDLFTIGAGSGGVRASRFAANFG--ASVAICE 102 (551)
Q Consensus 69 ~~~~~dVvIIGgG~aGl~aA~~l~~~G--~~V~liE 102 (551)
|.++.+|.|||+|..|.++|+.|+..| .++.|+|
T Consensus 2 m~~~~KI~IIGaG~VG~~~A~~l~~~~~~~elvL~D 37 (146)
T d1ez4a1 2 MPNHQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVD 37 (146)
T ss_dssp BTTBCEEEEECCSHHHHHHHHHHHHHTCCSEEEEEC
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHhcCCCcEEEEee
Confidence 556789999999999999999999977 4899999
|
| >d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Ketopantoate reductase PanE species: Escherichia coli [TaxId: 562]
Probab=94.78 E-value=0.012 Score=49.36 Aligned_cols=30 Identities=17% Similarity=0.102 Sum_probs=28.7
Q ss_pred ccEEEECCChHHHHHHHHHHhCCCcEEEEc
Q 008860 73 FDLFTIGAGSGGVRASRFAANFGASVAICE 102 (551)
Q Consensus 73 ~dVvIIGgG~aGl~aA~~l~~~G~~V~liE 102 (551)
++|+|||+|.-|...|..|++.|++|++++
T Consensus 1 MkI~IiGaG~iG~~~a~~L~~~G~~V~~~~ 30 (167)
T d1ks9a2 1 MKITVLGCGALGQLWLTALCKQGHEVQGWL 30 (167)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEC
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCceEEEE
Confidence 369999999999999999999999999999
|
| >d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Siroheme synthase CysG, domain 1 species: Salmonella typhimurium [TaxId: 90371]
Probab=94.71 E-value=0.032 Score=43.43 Aligned_cols=51 Identities=16% Similarity=0.034 Sum_probs=38.9
Q ss_pred CCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCCCCCHHHHHHHHHHHHhcCcEEEc
Q 008860 245 PEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRDFVAEQMSLRGIEFHT 305 (551)
Q Consensus 245 ~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~~ 305 (551)
+++++|||+|.+|..-+..|.+.|++|+++.... .+ .+.+..++.++++..
T Consensus 12 ~k~vlVvG~G~va~~ka~~ll~~ga~v~v~~~~~------~~----~~~~~~~~~~i~~~~ 62 (113)
T d1pjqa1 12 DRDCLIVGGGDVAERKARLLLEAGARLTVNALTF------IP----QFTVWANEGMLTLVE 62 (113)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTBEEEEEESSC------CH----HHHHHHTTTSCEEEE
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEEeccC------Ch----HHHHHHhcCCceeec
Confidence 6899999999999999999999999999987532 23 334444555565543
|
| >d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=94.68 E-value=0.011 Score=55.00 Aligned_cols=36 Identities=22% Similarity=0.289 Sum_probs=33.0
Q ss_pred eEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCC
Q 008860 247 KIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLR 282 (551)
Q Consensus 247 ~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~ 282 (551)
.++|||+|.+|+-+|..|++.|.+|+++++++++..
T Consensus 3 dv~IIGaG~sGl~~A~~L~~~g~~V~iiEk~~~iGG 38 (298)
T d1i8ta1 3 DYIIVGSGLFGAVCANELKKLNKKVLVIEKRNHIGG 38 (298)
T ss_dssp EEEEECCSHHHHHHHHHHGGGTCCEEEECSSSSSSG
T ss_pred cEEEECCcHHHHHHHHHHHhCCCcEEEEECCCCccc
Confidence 589999999999999999999999999999887643
|
| >d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.44 E-value=0.017 Score=47.70 Aligned_cols=34 Identities=18% Similarity=0.283 Sum_probs=31.4
Q ss_pred CCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeec
Q 008860 244 KPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQ 277 (551)
Q Consensus 244 ~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~ 277 (551)
.+++++|||||.+|.+-+..|.+.|++|+++.+.
T Consensus 12 ~gkrvLViGgG~va~~ka~~Ll~~GA~VtVvap~ 45 (150)
T d1kyqa1 12 KDKRILLIGGGEVGLTRLYKLMPTGCKLTLVSPD 45 (150)
T ss_dssp TTCEEEEEEESHHHHHHHHHHGGGTCEEEEEEEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 4789999999999999999999999999999753
|
| >d1vg0a1 c.3.1.3 (A:3-444,A:558-606) Rab escort protein 1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: GDI-like N domain domain: Rab escort protein 1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=94.40 E-value=0.031 Score=55.02 Aligned_cols=59 Identities=10% Similarity=0.066 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHhcCcEEEcCcccEEEEEc--CCceEEEEECCCeEEEeeEEEEecCcCCC
Q 008860 286 EDIRDFVAEQMSLRGIEFHTEESPQAILKS--TDGSLSVKTNKGTVDGFSHVMFATGRRPN 344 (551)
Q Consensus 286 ~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~--~~~~~~V~~~~G~~i~~d~vi~a~G~~p~ 344 (551)
.++.+.+-+...-.|..+++++.|++|..+ ++....|.+.+|+++.|+.||....+.|.
T Consensus 376 gEipQ~FcR~~AV~Gg~Y~L~~~i~~i~~d~e~~~~~~v~~~~g~~i~~k~vI~~psy~p~ 436 (491)
T d1vg0a1 376 GELPQCFCRMCAVFGGIYCLRHSVQCLVVDKESRKCKAVIDQFGQRIISKHFIIEDSYLSE 436 (491)
T ss_dssp THHHHHHHHHHHHTTCEEESSCCEEEEEEETTTCCEEEEEETTSCEEECSEEEEEGGGBCT
T ss_pred chHHHHHHHHHHhcCcEEEcCCccceEEEecCCCeEEEEEccCCcEEecCeEEECHHhCCc
Confidence 477888888888889999999999998875 23345677888999999999987766654
|
| >d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn bsu222 species: Bacillus subtilis [TaxId: 1423]
Probab=94.36 E-value=0.016 Score=46.71 Aligned_cols=29 Identities=21% Similarity=0.247 Sum_probs=28.2
Q ss_pred cEEEECCChHHHHHHHHHHhCCCcEEEEc
Q 008860 74 DLFTIGAGSGGVRASRFAANFGASVAICE 102 (551)
Q Consensus 74 dVvIIGgG~aGl~aA~~l~~~G~~V~liE 102 (551)
+++|||.|..|...|..|.+.|++|++||
T Consensus 2 ~~iIiG~G~~G~~la~~L~~~g~~vvvid 30 (134)
T d2hmva1 2 QFAVIGLGRFGGSIVKELHRMGHEVLAVD 30 (134)
T ss_dssp CEEEECCSHHHHHHHHHHHHTTCCCEEEE
T ss_pred EEEEECCCHHHHHHHHHHHHCCCeEEEec
Confidence 58999999999999999999999999999
|
| >d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: GDP-mannose 6-dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=94.21 E-value=0.017 Score=50.37 Aligned_cols=29 Identities=17% Similarity=0.170 Sum_probs=28.2
Q ss_pred cEEEECCChHHHHHHHHHHhCCCcEEEEc
Q 008860 74 DLFTIGAGSGGVRASRFAANFGASVAICE 102 (551)
Q Consensus 74 dVvIIGgG~aGl~aA~~l~~~G~~V~liE 102 (551)
+|.|||.|..|+..|..|++.|++|..+|
T Consensus 2 kI~ViGlG~vGl~~a~~la~~g~~V~g~D 30 (202)
T d1mv8a2 2 RISIFGLGYVGAVCAGCLSARGHEVIGVD 30 (202)
T ss_dssp EEEEECCSTTHHHHHHHHHHTTCEEEEEC
T ss_pred EEEEECCCHhHHHHHHHHHhCCCcEEEEe
Confidence 59999999999999999999999999999
|
| >d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Short chain L-3-hydroxyacyl CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.21 E-value=0.015 Score=50.32 Aligned_cols=37 Identities=16% Similarity=0.385 Sum_probs=33.1
Q ss_pred CCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccC
Q 008860 245 PEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVL 281 (551)
Q Consensus 245 ~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l 281 (551)
-++|.|||+|.+|..+|..++..|.+|+++++.+..+
T Consensus 4 IkkvaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~~l 40 (192)
T d1f0ya2 4 VKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDIL 40 (192)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHH
T ss_pred eEEEEEECcCHHHHHHHHHHHhCCCcEEEEECChHHH
Confidence 3799999999999999999999999999999876543
|
| >d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.18 E-value=0.014 Score=48.09 Aligned_cols=31 Identities=19% Similarity=0.294 Sum_probs=29.3
Q ss_pred CccEEEECCChHHHHHHHHHHhCCCcEEEEc
Q 008860 72 DFDLFTIGAGSGGVRASRFAANFGASVAICE 102 (551)
Q Consensus 72 ~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE 102 (551)
..+|+|||||..|+.-|..|.+.|.+|+||.
T Consensus 13 gkrvLViGgG~va~~ka~~Ll~~GA~VtVva 43 (150)
T d1kyqa1 13 DKRILLIGGGEVGLTRLYKLMPTGCKLTLVS 43 (150)
T ss_dssp TCEEEEEEESHHHHHHHHHHGGGTCEEEEEE
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEe
Confidence 3679999999999999999999999999997
|
| >d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Phenol hydroxylase species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]
Probab=94.14 E-value=0.021 Score=54.01 Aligned_cols=35 Identities=23% Similarity=0.316 Sum_probs=30.9
Q ss_pred eEEEEcCcHHHHHHHHHHH-----hCCCeEEEEeecCccC
Q 008860 247 KIAIVGGGYIALEFAGIFS-----GLTSEVHVFIRQKKVL 281 (551)
Q Consensus 247 ~vvViG~G~~g~e~a~~l~-----~~g~~Vtlv~~~~~~l 281 (551)
.|+|||+|++|+-+|..|+ +.|.+|+++++.+.+.
T Consensus 9 DV~IvGaG~aGl~lA~~La~~~~~~~G~~v~vlEr~~~~~ 48 (360)
T d1pn0a1 9 DVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRSTKV 48 (360)
T ss_dssp EEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSSSCC
T ss_pred CEEEECcCHHHHHHHHHHHhcccccCCCcEEEEcCCCCCC
Confidence 5899999999999999995 5799999999987654
|
| >d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavin-dependent monoxygenase SPBP16F5.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Probab=94.13 E-value=0.021 Score=53.86 Aligned_cols=35 Identities=31% Similarity=0.376 Sum_probs=31.5
Q ss_pred CeEEEEcCcHHHHHHHHHHHhCC--CeEEEEeecCcc
Q 008860 246 EKIAIVGGGYIALEFAGIFSGLT--SEVHVFIRQKKV 280 (551)
Q Consensus 246 ~~vvViG~G~~g~e~a~~l~~~g--~~Vtlv~~~~~~ 280 (551)
|+|+|||+|++|+-+|..|.+.+ .+|+++++++.+
T Consensus 5 KrVaIIGaG~sGl~~A~~L~~~~~~~~v~vfEk~~~i 41 (335)
T d2gv8a1 5 RKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSP 41 (335)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSSSS
T ss_pred CeEEEECcCHHHHHHHHHHHHhCCCCCEEEEECCCCC
Confidence 79999999999999999998766 599999999765
|
| >d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Monoamine oxidase B species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.10 E-value=0.02 Score=54.02 Aligned_cols=34 Identities=24% Similarity=0.410 Sum_probs=31.4
Q ss_pred eEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCcc
Q 008860 247 KIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKV 280 (551)
Q Consensus 247 ~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~ 280 (551)
.|+|||+|..|+-+|..|++.|.+|+++++++++
T Consensus 1 DViVIGaG~aGL~aA~~L~~~G~~V~VlE~~~~~ 34 (383)
T d2v5za1 1 DVVVVGGGISGMAAAKLLHDSGLNVVVLEARDRV 34 (383)
T ss_dssp SEEEECCBHHHHHHHHHHHHTTCCEEEEESSSSS
T ss_pred CEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCC
Confidence 3899999999999999999999999999987754
|
| >d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Siroheme synthase CysG, domain 1 species: Salmonella typhimurium [TaxId: 90371]
Probab=93.89 E-value=0.026 Score=43.97 Aligned_cols=31 Identities=26% Similarity=0.426 Sum_probs=29.4
Q ss_pred CccEEEECCChHHHHHHHHHHhCCCcEEEEc
Q 008860 72 DFDLFTIGAGSGGVRASRFAANFGASVAICE 102 (551)
Q Consensus 72 ~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE 102 (551)
..+|+|||+|..|..-|..|.+.|.+|++++
T Consensus 12 ~k~vlVvG~G~va~~ka~~ll~~ga~v~v~~ 42 (113)
T d1pjqa1 12 DRDCLIVGGGDVAERKARLLLEAGARLTVNA 42 (113)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTBEEEEEE
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEEe
Confidence 3679999999999999999999999999998
|
| >d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Toxoplasma gondii [TaxId: 5811]
Probab=93.83 E-value=0.028 Score=46.46 Aligned_cols=35 Identities=17% Similarity=0.107 Sum_probs=30.7
Q ss_pred CCCCCccEEEECCChHHHHHHHHHHhCCC-cEEEEc
Q 008860 68 PSHYDFDLFTIGAGSGGVRASRFAANFGA-SVAICE 102 (551)
Q Consensus 68 ~~~~~~dVvIIGgG~aGl~aA~~l~~~G~-~V~liE 102 (551)
-|+++.+|.|||+|..|.++|..|+..+. +++|+|
T Consensus 3 ~~~k~~KI~IIGaG~VG~~lA~~l~~~~~~el~L~D 38 (154)
T d1pzga1 3 LVQRRKKVAMIGSGMIGGTMGYLCALRELADVVLYD 38 (154)
T ss_dssp CCSCCCEEEEECCSHHHHHHHHHHHHHTCCEEEEEC
T ss_pred cccCCCcEEEECCCHHHHHHHHHHHhCCCceEEEEE
Confidence 35667899999999999999999888775 899999
|
| >d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Glycine oxidase ThiO species: Bacillus sp. [TaxId: 1409]
Probab=93.80 E-value=0.024 Score=51.57 Aligned_cols=32 Identities=19% Similarity=0.333 Sum_probs=30.2
Q ss_pred eEEEEcCcHHHHHHHHHHHhCCCeEEEEeecC
Q 008860 247 KIAIVGGGYIALEFAGIFSGLTSEVHVFIRQK 278 (551)
Q Consensus 247 ~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~ 278 (551)
.|+|||+|.+|+-+|..|++.|.+|+++++.+
T Consensus 6 DvvIIGaGi~Gls~A~~La~~G~~V~vlE~~~ 37 (276)
T d1ryia1 6 EAVVIGGGIIGSAIAYYLAKENKNTALFESGT 37 (276)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 59999999999999999999999999999864
|
| >d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Short chain L-3-hydroxyacyl CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.79 E-value=0.028 Score=48.39 Aligned_cols=30 Identities=27% Similarity=0.390 Sum_probs=29.1
Q ss_pred ccEEEECCChHHHHHHHHHHhCCCcEEEEc
Q 008860 73 FDLFTIGAGSGGVRASRFAANFGASVAICE 102 (551)
Q Consensus 73 ~dVvIIGgG~aGl~aA~~l~~~G~~V~liE 102 (551)
.+|.|||+|.-|...|..+++.|++|+++|
T Consensus 5 kkvaViGaG~mG~~iA~~~a~~G~~V~l~D 34 (192)
T d1f0ya2 5 KHVTVIGGGLMGAGIAQVAAATGHTVVLVD 34 (192)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEC
T ss_pred EEEEEECcCHHHHHHHHHHHhCCCcEEEEE
Confidence 579999999999999999999999999999
|
| >d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Trypanosome (Leishmania mexicana) [TaxId: 5665]
Probab=93.72 E-value=0.019 Score=49.46 Aligned_cols=34 Identities=15% Similarity=0.130 Sum_probs=30.8
Q ss_pred CCCCccEEEECCChHHHHHHHHHHhCCCcEEEEc
Q 008860 69 SHYDFDLFTIGAGSGGVRASRFAANFGASVAICE 102 (551)
Q Consensus 69 ~~~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE 102 (551)
|..+.+|+|||+|.-|.+.|..|++.|.+|.|..
T Consensus 4 ~~~m~KI~ViGaG~wGtAlA~~La~~g~~V~l~~ 37 (189)
T d1n1ea2 4 LLYLNKAVVFGSGAFGTALAMVLSKKCREVCVWH 37 (189)
T ss_dssp CCCEEEEEEECCSHHHHHHHHHHHTTEEEEEEEC
T ss_pred cceeceEEEECCCHHHHHHHHHHHHcCCeEEEEE
Confidence 3445689999999999999999999999999998
|
| >d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: HI0933 N-terminal domain-like domain: Hypothetical protein HI0933 species: Haemophilus influenzae [TaxId: 727]
Probab=93.72 E-value=0.025 Score=51.03 Aligned_cols=35 Identities=31% Similarity=0.383 Sum_probs=31.9
Q ss_pred CeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCcc
Q 008860 246 EKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKV 280 (551)
Q Consensus 246 ~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~ 280 (551)
..|+|||+|+.|+-+|..+++.|.+|.++++.+.+
T Consensus 5 ~DViIIGaG~aGl~aA~~la~~G~~V~vlEk~~~~ 39 (253)
T d2gqfa1 5 SENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKKI 39 (253)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred CcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence 36999999999999999999999999999988653
|
| >d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Fatty oxidation complex alpha subunit, middle domain species: Pseudomonas fragi [TaxId: 296]
Probab=93.65 E-value=0.024 Score=48.65 Aligned_cols=30 Identities=20% Similarity=0.206 Sum_probs=28.8
Q ss_pred ccEEEECCChHHHHHHHHHHhCCCcEEEEc
Q 008860 73 FDLFTIGAGSGGVRASRFAANFGASVAICE 102 (551)
Q Consensus 73 ~dVvIIGgG~aGl~aA~~l~~~G~~V~liE 102 (551)
.+|.|||+|.-|...|..+++.|++|+++|
T Consensus 5 ~~vaViGaG~mG~~iA~~~a~~G~~V~l~D 34 (186)
T d1wdka3 5 KQAAVLGAGIMGGGIAYQSASKGTPILMKD 34 (186)
T ss_dssp SSEEEECCHHHHHHHHHHHHHTTCCEEEEC
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEE
Confidence 469999999999999999999999999999
|
| >d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Neisseria meningitidis [TaxId: 487]
Probab=93.64 E-value=0.032 Score=49.35 Aligned_cols=33 Identities=21% Similarity=0.195 Sum_probs=30.7
Q ss_pred eEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCc
Q 008860 247 KIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKK 279 (551)
Q Consensus 247 ~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~ 279 (551)
.++|||+|+.|+.+|..+++.|.+|+++++.+.
T Consensus 8 DviIIG~GPaGlsaA~~aa~~G~~V~viE~~~~ 40 (229)
T d1ojta1 8 DVVVLGGGPGGYSAAFAAADEGLKVAIVERYKT 40 (229)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEEESSSC
T ss_pred CEEEECcCHHHHHHHHHHHHCCCeEEEEeccCC
Confidence 589999999999999999999999999998664
|
| >d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: HI0933 N-terminal domain-like domain: Flavoprotein BC4706 species: Bacillus cereus [TaxId: 1396]
Probab=93.58 E-value=0.028 Score=50.33 Aligned_cols=34 Identities=21% Similarity=0.223 Sum_probs=31.2
Q ss_pred eEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCcc
Q 008860 247 KIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKV 280 (551)
Q Consensus 247 ~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~ 280 (551)
.|+|||+|+.|+-+|..|++.|.+|+++++.+.+
T Consensus 4 DViIIGaG~aGl~aA~~la~~G~~V~liEk~~~~ 37 (251)
T d2i0za1 4 DVIVIGGGPSGLMAAIGAAEEGANVLLLDKGNKL 37 (251)
T ss_dssp SEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCC
Confidence 5899999999999999999999999999987643
|
| >d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.47 E-value=0.035 Score=48.92 Aligned_cols=34 Identities=21% Similarity=0.220 Sum_probs=31.2
Q ss_pred eEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCcc
Q 008860 247 KIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKV 280 (551)
Q Consensus 247 ~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~ 280 (551)
.|+|||+|+.|+.+|..+++.|.+|.++++.+.+
T Consensus 7 DviVIG~GpAGl~aA~~aa~~G~kV~lie~~~~~ 40 (233)
T d1v59a1 7 DVVIIGGGPAGYVAAIKAAQLGFNTACVEKRGKL 40 (233)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSS
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCc
Confidence 5899999999999999999999999999987653
|
| >d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Fatty oxidation complex alpha subunit, middle domain species: Pseudomonas fragi [TaxId: 296]
Probab=93.37 E-value=0.018 Score=49.35 Aligned_cols=35 Identities=11% Similarity=0.078 Sum_probs=32.0
Q ss_pred CCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCc
Q 008860 245 PEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKK 279 (551)
Q Consensus 245 ~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~ 279 (551)
-++|.|||+|.+|..+|..+...|.+|+++++.+.
T Consensus 4 I~~vaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~ 38 (186)
T d1wdka3 4 VKQAAVLGAGIMGGGIAYQSASKGTPILMKDINEH 38 (186)
T ss_dssp CSSEEEECCHHHHHHHHHHHHHTTCCEEEECSSHH
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCeEEEEECCHH
Confidence 46899999999999999999999999999998654
|
| >d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Dihydropyrimidine dehydrogenase, domain 3 species: Pig (Sus scrofa) [TaxId: 9823]
Probab=93.30 E-value=0.036 Score=45.74 Aligned_cols=30 Identities=23% Similarity=0.263 Sum_probs=27.1
Q ss_pred ccEEEECCChHHHHHHHHHHhCCCc-EEEEc
Q 008860 73 FDLFTIGAGSGGVRASRFAANFGAS-VAICE 102 (551)
Q Consensus 73 ~dVvIIGgG~aGl~aA~~l~~~G~~-V~liE 102 (551)
.+|||||||-.|+-+|..|.+.|.+ |+++.
T Consensus 46 ~kVvVIGGGdtA~D~A~~a~r~GA~~V~vi~ 76 (153)
T d1gtea3 46 GAVIVLGAGDTAFDCATSALRCGARRVFLVF 76 (153)
T ss_dssp SEEEEECSSHHHHHHHHHHHHTTCSEEEEEC
T ss_pred CEEEEECCChhHHHHHHHHHHcCCcceeEEE
Confidence 4799999999999999999999864 88887
|
| >d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Saccharopine reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=93.15 E-value=0.04 Score=46.36 Aligned_cols=34 Identities=15% Similarity=0.321 Sum_probs=31.6
Q ss_pred CCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecC
Q 008860 245 PEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQK 278 (551)
Q Consensus 245 ~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~ 278 (551)
.|+|+|+|+|.+|..+|..|.+.|.+|++++|..
T Consensus 2 ~K~IliiGaG~~G~~~a~~L~~~g~~V~v~dr~~ 35 (182)
T d1e5qa1 2 TKSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTL 35 (182)
T ss_dssp CCEEEEECCSTTHHHHHHHHHTTTCEEEEEESCH
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCh
Confidence 4899999999999999999999999999999854
|
| >d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD species: Escherichia coli [TaxId: 562]
Probab=92.94 E-value=0.054 Score=40.33 Aligned_cols=36 Identities=17% Similarity=0.247 Sum_probs=32.4
Q ss_pred CCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCc
Q 008860 244 KPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKK 279 (551)
Q Consensus 244 ~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~ 279 (551)
..|+++|+|.|-+|..+|.+|.+.|.+|++.+....
T Consensus 4 ~~K~v~ViGlG~sG~s~a~~L~~~g~~v~~~D~~~~ 39 (93)
T d2jfga1 4 QGKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMT 39 (93)
T ss_dssp TTCCEEEECCSHHHHHHHHHHHHTTCCCEEEESSSS
T ss_pred CCCEEEEEeECHHHHHHHHHHHHCCCEEEEeeCCcC
Confidence 368999999999999999999999999999987553
|
| >d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: N,N-dimethylglycine oxidase species: Arthrobacter globiformis [TaxId: 1665]
Probab=92.79 E-value=0.039 Score=50.98 Aligned_cols=32 Identities=19% Similarity=0.318 Sum_probs=29.3
Q ss_pred eEEEEcCcHHHHHHHHHHHhCCC-eEEEEeecC
Q 008860 247 KIAIVGGGYIALEFAGIFSGLTS-EVHVFIRQK 278 (551)
Q Consensus 247 ~vvViG~G~~g~e~a~~l~~~g~-~Vtlv~~~~ 278 (551)
+|+|||+|.+|+-+|..|++.|. +|+++++.+
T Consensus 3 dViIIGaGi~G~s~A~~La~~G~~~V~liE~~~ 35 (305)
T d1pj5a2 3 RIVIIGAGIVGTNLADELVTRGWNNITVLDQGP 35 (305)
T ss_dssp CEEEECCSHHHHHHHHHHHHTTCCCEEEECSSC
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCcEEEEeCCC
Confidence 69999999999999999999995 799999864
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Probab=92.74 E-value=0.046 Score=46.27 Aligned_cols=33 Identities=18% Similarity=0.143 Sum_probs=30.8
Q ss_pred CeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecC
Q 008860 246 EKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQK 278 (551)
Q Consensus 246 ~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~ 278 (551)
+++.|||+|..|.-+|..|.+.|.+|+++.|.+
T Consensus 2 k~iaIiGaG~~G~~~A~~l~~~G~~V~~~~r~~ 34 (184)
T d1bg6a2 2 KTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDA 34 (184)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred CEEEEECccHHHHHHHHHHHHCCCEEEEEECCH
Confidence 789999999999999999999999999998843
|
| >d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Ketopantoate reductase PanE species: Escherichia coli [TaxId: 562]
Probab=92.57 E-value=0.059 Score=44.74 Aligned_cols=33 Identities=21% Similarity=0.351 Sum_probs=30.6
Q ss_pred eEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCc
Q 008860 247 KIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKK 279 (551)
Q Consensus 247 ~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~ 279 (551)
+|+|||+|.+|.-+|..|.+.|.+|+++.|.+.
T Consensus 2 kI~IiGaG~iG~~~a~~L~~~G~~V~~~~r~~~ 34 (167)
T d1ks9a2 2 KITVLGCGALGQLWLTALCKQGHEVQGWLRVPQ 34 (167)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred EEEEECcCHHHHHHHHHHHHCCCceEEEEcCHH
Confidence 689999999999999999999999999998653
|
| >d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Sarcosine oxidase species: Bacillus sp., strain b0618 [TaxId: 1409]
Probab=92.55 E-value=0.048 Score=49.66 Aligned_cols=33 Identities=9% Similarity=0.119 Sum_probs=30.4
Q ss_pred eEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCc
Q 008860 247 KIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKK 279 (551)
Q Consensus 247 ~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~ 279 (551)
.|+|||+|.+|+-+|..|++.|.+|+++++.+.
T Consensus 5 DvvIIGaGi~Gls~A~~La~~G~~V~viE~~~~ 37 (281)
T d2gf3a1 5 DVIVVGAGSMGMAAGYQLAKQGVKTLLVDAFDP 37 (281)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEECSSCS
T ss_pred CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence 589999999999999999999999999998653
|
| >d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=92.23 E-value=0.046 Score=46.43 Aligned_cols=30 Identities=27% Similarity=0.245 Sum_probs=28.3
Q ss_pred ccEEEECCChHHHHHHHHHHhCCCcEEEEc
Q 008860 73 FDLFTIGAGSGGVRASRFAANFGASVAICE 102 (551)
Q Consensus 73 ~dVvIIGgG~aGl~aA~~l~~~G~~V~liE 102 (551)
++|.|||+|.-|.+.|..|++.|.+|.|..
T Consensus 1 MkI~ViGaG~~GtalA~~la~~g~~V~l~~ 30 (180)
T d1txga2 1 MIVSILGAGAMGSALSVPLVDNGNEVRIWG 30 (180)
T ss_dssp CEEEEESCCHHHHHHHHHHHHHCCEEEEEC
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEE
Confidence 369999999999999999999999999996
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=91.98 E-value=0.23 Score=39.30 Aligned_cols=31 Identities=19% Similarity=0.200 Sum_probs=29.1
Q ss_pred eEEEEcCcHHHHHHHHHHHhCCCeEEEEeec
Q 008860 247 KIAIVGGGYIALEFAGIFSGLTSEVHVFIRQ 277 (551)
Q Consensus 247 ~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~ 277 (551)
+|+|+|+|..|..++..|.+.|.+|++++..
T Consensus 2 ~IvI~G~G~~G~~la~~L~~~g~~v~vid~d 32 (132)
T d1lssa_ 2 YIIIAGIGRVGYTLAKSLSEKGHDIVLIDID 32 (132)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred EEEEECCCHHHHHHHHHHHHCCCCcceecCC
Confidence 6899999999999999999999999999874
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=91.37 E-value=0.085 Score=43.84 Aligned_cols=29 Identities=14% Similarity=0.041 Sum_probs=28.0
Q ss_pred cEEEECCChHHHHHHHHHHhCCCcEEEEc
Q 008860 74 DLFTIGAGSGGVRASRFAANFGASVAICE 102 (551)
Q Consensus 74 dVvIIGgG~aGl~aA~~l~~~G~~V~liE 102 (551)
+|.|||.|.-|.+.|..|++.|++|+++|
T Consensus 2 kI~iIG~G~mG~~lA~~l~~~g~~V~~~d 30 (165)
T d2f1ka2 2 KIGVVGLGLIGASLAGDLRRRGHYLIGVS 30 (165)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCEEEEEC
T ss_pred EEEEEeecHHHHHHHHHHHHCCCEEEEEE
Confidence 59999999999999999999999999999
|
| >d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]
Probab=91.34 E-value=0.12 Score=42.65 Aligned_cols=31 Identities=13% Similarity=0.235 Sum_probs=29.1
Q ss_pred CccEEEECCChHHHHHHHHHHhCCC--cEEEEc
Q 008860 72 DFDLFTIGAGSGGVRASRFAANFGA--SVAICE 102 (551)
Q Consensus 72 ~~dVvIIGgG~aGl~aA~~l~~~G~--~V~liE 102 (551)
+.+|.|||+|..|.++|+.|...|+ ++.|+|
T Consensus 20 ~~KV~IIGaG~VG~~~A~~l~~~~l~~ElvLiD 52 (160)
T d1i0za1 20 NNKITVVGVGQVGMACAISILGKSLADELALVD 52 (160)
T ss_dssp SSEEEEECCSHHHHHHHHHHHHTTCCSEEEEEC
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCCcEEEEEE
Confidence 4699999999999999999999887 899999
|
| >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=91.25 E-value=0.1 Score=43.13 Aligned_cols=34 Identities=35% Similarity=0.604 Sum_probs=31.6
Q ss_pred CCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecC
Q 008860 245 PEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQK 278 (551)
Q Consensus 245 ~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~ 278 (551)
|.+|+|+|+|..|...+....++|.+|++++.+.
T Consensus 32 pa~V~ViGaGvaG~~A~~~A~~lGA~V~~~D~~~ 65 (168)
T d1pjca1 32 PGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINV 65 (168)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred CcEEEEECCChHHHHHHHHHhhCCCEEEEEeCcH
Confidence 6799999999999999999999999999998753
|
| >d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=91.15 E-value=0.099 Score=42.66 Aligned_cols=31 Identities=23% Similarity=0.256 Sum_probs=28.2
Q ss_pred CccEEEECCChHHHHHHHHHHhCCC--cEEEEc
Q 008860 72 DFDLFTIGAGSGGVRASRFAANFGA--SVAICE 102 (551)
Q Consensus 72 ~~dVvIIGgG~aGl~aA~~l~~~G~--~V~liE 102 (551)
..+|.|||+|..|.++|+.|...+. ++.|+|
T Consensus 6 ~~KI~IiGaG~vG~~~a~~l~~~~l~~el~L~D 38 (148)
T d1ldna1 6 GARVVVIGAGFVGASYVFALMNQGIADEIVLID 38 (148)
T ss_dssp SCEEEEECCSHHHHHHHHHHHHHTCCSEEEEEC
T ss_pred CCeEEEECcCHHHHHHHHHHHhcCCCceEEEEe
Confidence 4689999999999999999999775 799999
|
| >d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Haemophilus influenzae [TaxId: 727]
Probab=90.91 E-value=0.12 Score=42.24 Aligned_cols=31 Identities=19% Similarity=0.299 Sum_probs=29.2
Q ss_pred CccEEEEC-CChHHHHHHHHHHhCCCcEEEEc
Q 008860 72 DFDLFTIG-AGSGGVRASRFAANFGASVAICE 102 (551)
Q Consensus 72 ~~dVvIIG-gG~aGl~aA~~l~~~G~~V~liE 102 (551)
..+|.||| .|.-|.+.|..|++.|++|.++|
T Consensus 9 ~~kI~iIGg~G~mG~~la~~L~~~G~~V~~~d 40 (152)
T d2pv7a2 9 IHKIVIVGGYGKLGGLFARYLRASGYPISILD 40 (152)
T ss_dssp CCCEEEETTTSHHHHHHHHHHHTTTCCEEEEC
T ss_pred CCeEEEEcCCCHHHHHHHHHHHHcCCCcEecc
Confidence 46899999 69999999999999999999999
|
| >d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: UDP-glucose dehydrogenase (UDPGDH) species: Streptococcus pyogenes [TaxId: 1314]
Probab=90.88 E-value=0.077 Score=45.56 Aligned_cols=28 Identities=18% Similarity=0.337 Sum_probs=25.9
Q ss_pred cEEEECCChHHHHHHHHHHhCCCcEEEEc
Q 008860 74 DLFTIGAGSGGVRASRFAANFGASVAICE 102 (551)
Q Consensus 74 dVvIIGgG~aGl~aA~~l~~~G~~V~liE 102 (551)
+|.|||.|..|+..|..++ .|++|+.+|
T Consensus 2 kI~ViGlG~vGl~~a~~~a-~g~~V~g~D 29 (196)
T d1dlja2 2 KIAVAGSGYVGLSLGVLLS-LQNEVTIVD 29 (196)
T ss_dssp EEEEECCSHHHHHHHHHHT-TTSEEEEEC
T ss_pred EEEEECCChhHHHHHHHHH-CCCcEEEEE
Confidence 5999999999999998886 599999999
|
| >d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Flavocytochrome c3 (respiratory fumarate reductase) species: Shewanella frigidimarina [TaxId: 56812]
Probab=90.45 E-value=0.1 Score=48.02 Aligned_cols=33 Identities=15% Similarity=0.177 Sum_probs=30.8
Q ss_pred eEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCc
Q 008860 247 KIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKK 279 (551)
Q Consensus 247 ~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~ 279 (551)
.|+|||+|..|+-+|..+++.|.+|.++++.+.
T Consensus 18 DVlVIG~G~aGl~aA~~la~~G~~V~lvEK~~~ 50 (308)
T d1y0pa2 18 DVVVVGSGGAGFSAAISATDSGAKVILIEKEPV 50 (308)
T ss_dssp SEEEECCSHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred CEEEECcCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence 699999999999999999999999999998764
|
| >d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Escherichia coli [TaxId: 562]
Probab=90.37 E-value=0.38 Score=39.91 Aligned_cols=38 Identities=16% Similarity=0.117 Sum_probs=32.9
Q ss_pred CCCCCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecC
Q 008860 241 LPSKPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQK 278 (551)
Q Consensus 241 ~~~~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~ 278 (551)
....+++|+|+|+|-.+--++..|.+.|.+++++.|..
T Consensus 14 ~~~~~k~vlIlGaGGaarai~~al~~~g~~i~I~nRt~ 51 (170)
T d1nyta1 14 FIRPGLRILLIGAGGASRGVLLPLLSLDCAVTITNRTV 51 (170)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSH
T ss_pred CCCCCCEEEEECCcHHHHHHHHHhcccceEEEeccchH
Confidence 34457899999999999999999999999999988853
|
| >d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavin-dependent monoxygenase SPBP16F5.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Probab=90.03 E-value=0.11 Score=39.70 Aligned_cols=31 Identities=10% Similarity=0.080 Sum_probs=27.8
Q ss_pred CccEEEECCChHHHHHHHHHHhCCCcEEEEc
Q 008860 72 DFDLFTIGAGSGGVRASRFAANFGASVAICE 102 (551)
Q Consensus 72 ~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE 102 (551)
..+|+|||+|.+|.-.|..|++...+++++.
T Consensus 32 gK~VlVVG~g~Sa~dia~~l~~~ak~v~~~~ 62 (107)
T d2gv8a2 32 GESVLVVGGASSANDLVRHLTPVAKHPIYQS 62 (107)
T ss_dssp TCCEEEECSSHHHHHHHHHHTTTSCSSEEEE
T ss_pred CCeEEEECCCCCHHHHHHHHHHhcCEEEEEE
Confidence 3689999999999999999999888887776
|
| >d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chlorobium vibrioforme [TaxId: 1098]
Probab=89.81 E-value=0.15 Score=41.18 Aligned_cols=29 Identities=21% Similarity=0.264 Sum_probs=27.0
Q ss_pred cEEEECCChHHHHHHHHHHhCCC--cEEEEc
Q 008860 74 DLFTIGAGSGGVRASRFAANFGA--SVAICE 102 (551)
Q Consensus 74 dVvIIGgG~aGl~aA~~l~~~G~--~V~liE 102 (551)
+|.|||+|..|.+.|..|+..+. ++.|+|
T Consensus 2 KI~IIGaG~VG~~la~~l~~~~l~~el~L~D 32 (142)
T d1guza1 2 KITVIGAGNVGATTAFRLAEKQLARELVLLD 32 (142)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCSEEEEEC
T ss_pred EEEEECcCHHHHHHHHHHHhCCCCceEEEec
Confidence 69999999999999999999874 899999
|
| >d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Clostridium thermocellum [TaxId: 1515]
Probab=89.62 E-value=0.18 Score=40.72 Aligned_cols=30 Identities=23% Similarity=0.183 Sum_probs=27.7
Q ss_pred ccEEEECCChHHHHHHHHHHhCCC--cEEEEc
Q 008860 73 FDLFTIGAGSGGVRASRFAANFGA--SVAICE 102 (551)
Q Consensus 73 ~dVvIIGgG~aGl~aA~~l~~~G~--~V~liE 102 (551)
.+|.|||+|..|.++|+.|...+. ++.|+|
T Consensus 2 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~L~D 33 (142)
T d1y6ja1 2 SKVAIIGAGFVGASAAFTMALRQTANELVLID 33 (142)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCSSEEEEEC
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCCCEEEEEe
Confidence 379999999999999999999876 899999
|
| >d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamyl tRNA-reductase middle domain species: Archaeon Methanopyrus kandleri [TaxId: 2320]
Probab=89.60 E-value=0.11 Score=42.82 Aligned_cols=34 Identities=21% Similarity=0.220 Sum_probs=30.1
Q ss_pred CCCeEEEEcCcHHHHHHHHHHHhCCC-eEEEEeec
Q 008860 244 KPEKIAIVGGGYIALEFAGIFSGLTS-EVHVFIRQ 277 (551)
Q Consensus 244 ~~~~vvViG~G~~g~e~a~~l~~~g~-~Vtlv~~~ 277 (551)
..++++|||+|.+|..++..|...|. ++++..|.
T Consensus 23 ~~~~ilviGaG~~g~~v~~~L~~~g~~~i~v~nRt 57 (159)
T d1gpja2 23 HDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRT 57 (159)
T ss_dssp TTCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSS
T ss_pred ccCeEEEECCCHHHHHHHHHHHhcCCcEEEEEcCc
Confidence 36799999999999999999999997 68888875
|
| >d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Thermotoga maritima [TaxId: 2336]
Probab=89.47 E-value=0.41 Score=34.94 Aligned_cols=70 Identities=19% Similarity=0.042 Sum_probs=49.3
Q ss_pred eEEEEcCcHHHH-HHHHHHHhCCCeEEEEeecCccCCCCCHHHHHHHHHHHHhcCcEEEcCcccEEEEEcCCceEEEEEC
Q 008860 247 KIAIVGGGYIAL-EFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSVKTN 325 (551)
Q Consensus 247 ~vvViG~G~~g~-e~a~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V~~~ 325 (551)
|+-+||-|-+|+ -+|..|.+.|.+|+-.++.+. ...+.|++.|++++.+.....+
T Consensus 3 ~ihfiGIgG~GMs~LA~~L~~~G~~VsGSD~~~~-----------~~t~~L~~~Gi~i~~gh~~~~i------------- 58 (89)
T d1j6ua1 3 KIHFVGIGGIGMSAVALHEFSNGNDVYGSNIEET-----------ERTAYLRKLGIPIFVPHSADNW------------- 58 (89)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCEEEEECSSCC-----------HHHHHHHHTTCCEESSCCTTSC-------------
T ss_pred EEEEEeECHHHHHHHHHHHHhCCCeEEEEeCCCC-----------hhHHHHHHCCCeEEeeeccccc-------------
Confidence 677888777776 469999999999988775431 2334589999999877543222
Q ss_pred CCeEEEeeEEEEecCcCCC
Q 008860 326 KGTVDGFSHVMFATGRRPN 344 (551)
Q Consensus 326 ~G~~i~~d~vi~a~G~~p~ 344 (551)
-.+|.||+..+...+
T Consensus 59 ----~~~d~vV~SsAI~~~ 73 (89)
T d1j6ua1 59 ----YDPDLVIKTPAVRDD 73 (89)
T ss_dssp ----CCCSEEEECTTCCTT
T ss_pred ----CCCCEEEEecCcCCC
Confidence 136888888776544
|
| >d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn bsu222 species: Bacillus subtilis [TaxId: 1423]
Probab=89.46 E-value=0.13 Score=40.87 Aligned_cols=32 Identities=16% Similarity=0.169 Sum_probs=29.8
Q ss_pred CeEEEEcCcHHHHHHHHHHHhCCCeEEEEeec
Q 008860 246 EKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQ 277 (551)
Q Consensus 246 ~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~ 277 (551)
|+++|+|.|..|..+|..|.+.|.+|++++..
T Consensus 1 k~~iIiG~G~~G~~la~~L~~~g~~vvvid~d 32 (134)
T d2hmva1 1 KQFAVIGLGRFGGSIVKELHRMGHEVLAVDIN 32 (134)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCCCEEEESC
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEecCc
Confidence 57899999999999999999999999999874
|
| >d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]
Probab=89.43 E-value=0.16 Score=40.98 Aligned_cols=30 Identities=30% Similarity=0.348 Sum_probs=27.7
Q ss_pred ccEEEECCChHHHHHHHHHHhCCC--cEEEEc
Q 008860 73 FDLFTIGAGSGGVRASRFAANFGA--SVAICE 102 (551)
Q Consensus 73 ~dVvIIGgG~aGl~aA~~l~~~G~--~V~liE 102 (551)
.+|.|||+|..|.++|+.|...++ ++.|+|
T Consensus 2 ~Ki~IIGaG~VG~~~a~~l~~~~l~~ElvL~D 33 (143)
T d1llda1 2 TKLAVIGAGAVGSTLAFAAAQRGIAREIVLED 33 (143)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCSEEEEEC
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCcEEEEEE
Confidence 369999999999999999999886 899999
|
| >d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH species: Lactobacillus confusus [TaxId: 1583]
Probab=89.42 E-value=0.13 Score=41.78 Aligned_cols=30 Identities=17% Similarity=0.163 Sum_probs=27.3
Q ss_pred ccEEEECCChHHHHHHHHHHhCCC--cEEEEc
Q 008860 73 FDLFTIGAGSGGVRASRFAANFGA--SVAICE 102 (551)
Q Consensus 73 ~dVvIIGgG~aGl~aA~~l~~~G~--~V~liE 102 (551)
.+|.|||+|..|.++|+.|...|. +++|+|
T Consensus 2 kKI~IIGaG~VG~~~a~~l~~~~~~~elvL~D 33 (146)
T d1hyha1 2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFID 33 (146)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCSEEEEEC
T ss_pred CeEEEECcCHHHHHHHHHHHhcCCCceEEEEe
Confidence 479999999999999999998774 899999
|
| >d1trba2 c.3.1.5 (A:119-244) Thioredoxin reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Escherichia coli [TaxId: 562]
Probab=89.34 E-value=0.16 Score=40.10 Aligned_cols=31 Identities=19% Similarity=0.395 Sum_probs=29.3
Q ss_pred CccEEEECCChHHHHHHHHHHhCCCcEEEEc
Q 008860 72 DFDLFTIGAGSGGVRASRFAANFGASVAICE 102 (551)
Q Consensus 72 ~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE 102 (551)
..+|+|||+|-+.+-.|..|++...+|+|+-
T Consensus 27 ~k~V~VvGgGdsA~e~A~~L~~~a~~V~li~ 57 (126)
T d1trba2 27 NQKVAVIGGGNTAVEEALYLSNIASEVHLIH 57 (126)
T ss_dssp TSEEEEECSSHHHHHHHHHHTTTSSEEEEEC
T ss_pred CCEEEEECCCHHHHHHHHHHhhcCCcEEEEe
Confidence 4689999999999999999999999999997
|
| >d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Escherichia coli [TaxId: 562]
Probab=89.30 E-value=0.17 Score=42.13 Aligned_cols=31 Identities=19% Similarity=0.279 Sum_probs=28.9
Q ss_pred CccEEEECCChHHHHHHHHHHhCCCcEEEEc
Q 008860 72 DFDLFTIGAGSGGVRASRFAANFGASVAICE 102 (551)
Q Consensus 72 ~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE 102 (551)
..+|+|||+|-++.++++.|.+.|.+|+|+.
T Consensus 18 ~k~vlIlGaGGaarai~~al~~~g~~i~I~n 48 (170)
T d1nyta1 18 GLRILLIGAGGASRGVLLPLLSLDCAVTITN 48 (170)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCEEEEEC
T ss_pred CCEEEEECCcHHHHHHHHHhcccceEEEecc
Confidence 3579999999999999999999999999998
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=89.16 E-value=0.16 Score=42.20 Aligned_cols=29 Identities=31% Similarity=0.417 Sum_probs=27.3
Q ss_pred cEEEECCChHHHHHHHHHHhCCCcEEEEc
Q 008860 74 DLFTIGAGSGGVRASRFAANFGASVAICE 102 (551)
Q Consensus 74 dVvIIGgG~aGl~aA~~l~~~G~~V~liE 102 (551)
.|+|+|+|+.|+.++..++..|.+|+++|
T Consensus 29 ~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~ 57 (170)
T d1e3ja2 29 TVLVIGAGPIGLVSVLAAKAYGAFVVCTA 57 (170)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCEEEEEE
T ss_pred EEEEEcccccchhhHhhHhhhcccccccc
Confidence 59999999999999988888999999999
|
| >d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Flavocytochrome c3 (respiratory fumarate reductase) species: Shewanella putrefaciens [TaxId: 24]
Probab=89.04 E-value=0.15 Score=47.25 Aligned_cols=33 Identities=18% Similarity=0.211 Sum_probs=30.7
Q ss_pred eEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCc
Q 008860 247 KIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKK 279 (551)
Q Consensus 247 ~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~ 279 (551)
.|+|||+|..|+-+|..+++.|.+|.++++.+.
T Consensus 25 DVvVIG~G~aGl~aA~~la~~G~~V~llEk~~~ 57 (322)
T d1d4ca2 25 DVVIIGSGGAGLAAAVSARDAGAKVILLEKEPI 57 (322)
T ss_dssp SEEEECSSHHHHHHHHHHHTTTCCEEEECSSSS
T ss_pred eEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence 599999999999999999999999999998653
|
| >d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO species: Pig (Sus scrofa) [TaxId: 9823]
Probab=88.97 E-value=0.16 Score=48.58 Aligned_cols=34 Identities=21% Similarity=0.262 Sum_probs=31.0
Q ss_pred eEEEEcCcHHHHHHHHHHHh------CCCeEEEEeecCcc
Q 008860 247 KIAIVGGGYIALEFAGIFSG------LTSEVHVFIRQKKV 280 (551)
Q Consensus 247 ~vvViG~G~~g~e~a~~l~~------~g~~Vtlv~~~~~~ 280 (551)
.|+|||+|+.|+-+|..|++ .|.+|.++++...+
T Consensus 34 DViIVGgGPAGlsaA~~LA~l~~~~~~Gl~VlllEK~~~p 73 (380)
T d2gmha1 34 DVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAHI 73 (380)
T ss_dssp SEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSSSST
T ss_pred CEEEECCCHHHHHHHHHHHhhhhhhcCCCEEEEEcCCCCC
Confidence 69999999999999999987 79999999998654
|
| >d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chloroflexus aurantiacus [TaxId: 1108]
Probab=88.93 E-value=0.15 Score=41.11 Aligned_cols=30 Identities=20% Similarity=0.276 Sum_probs=27.2
Q ss_pred ccEEEECCChHHHHHHHHHHhCCC-cEEEEc
Q 008860 73 FDLFTIGAGSGGVRASRFAANFGA-SVAICE 102 (551)
Q Consensus 73 ~dVvIIGgG~aGl~aA~~l~~~G~-~V~liE 102 (551)
.+|.|||+|..|.++|+.|+..+. ++.++|
T Consensus 2 ~KI~IIGaG~VG~~~A~~l~~~~l~dl~l~D 32 (142)
T d1uxja1 2 KKISIIGAGFVGSTTAHWLAAKELGDIVLLD 32 (142)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCSEEEEEC
T ss_pred CeEEEECCCHHHHHHHHHHHhCCcceEEEEe
Confidence 379999999999999999998775 899999
|
| >d1fl2a2 c.3.1.5 (A:326-451) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains species: Escherichia coli [TaxId: 562]
Probab=88.89 E-value=0.18 Score=39.78 Aligned_cols=31 Identities=29% Similarity=0.324 Sum_probs=29.2
Q ss_pred CccEEEECCChHHHHHHHHHHhCCCcEEEEc
Q 008860 72 DFDLFTIGAGSGGVRASRFAANFGASVAICE 102 (551)
Q Consensus 72 ~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE 102 (551)
..+|+|||+|-+.+-.|..|++...+|+||-
T Consensus 30 gk~V~VvGgG~sA~~~A~~L~~~a~~V~li~ 60 (126)
T d1fl2a2 30 GKRVAVIGGGNSGVEAAIDLAGIVEHVTLLE 60 (126)
T ss_dssp TCEEEEECCSHHHHHHHHHHHTTBSEEEEEC
T ss_pred CceEEEEeCCHHHHHHHHhhhccCCceEEEe
Confidence 4689999999999999999999988999997
|
| >d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=88.67 E-value=0.16 Score=41.05 Aligned_cols=30 Identities=20% Similarity=0.178 Sum_probs=27.0
Q ss_pred ccEEEECCChHHHHHHHHHHhCCC--cEEEEc
Q 008860 73 FDLFTIGAGSGGVRASRFAANFGA--SVAICE 102 (551)
Q Consensus 73 ~dVvIIGgG~aGl~aA~~l~~~G~--~V~liE 102 (551)
++|.|||+|-.|.++|+.|+..|. ++.|+|
T Consensus 1 MKI~IIGaG~VG~~~a~~l~~~~~~~elvL~D 32 (142)
T d1ojua1 1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVD 32 (142)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHSCCSEEEEEC
T ss_pred CEEEEECcCHHHHHHHHHHHhcCcCceEEEEe
Confidence 369999999999999999998774 799999
|
| >d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO) species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=88.67 E-value=0.17 Score=42.76 Aligned_cols=29 Identities=17% Similarity=0.273 Sum_probs=27.2
Q ss_pred cEEEE-CCChHHHHHHHHHHhCCCcEEEEc
Q 008860 74 DLFTI-GAGSGGVRASRFAANFGASVAICE 102 (551)
Q Consensus 74 dVvII-GgG~aGl~aA~~l~~~G~~V~liE 102 (551)
+|.|| |+|.-|.+.|..|++.|++|++..
T Consensus 2 ki~vigGaG~iG~alA~~la~~G~~V~l~~ 31 (212)
T d1jaya_ 2 RVALLGGTGNLGKGLALRLATLGHEIVVGS 31 (212)
T ss_dssp EEEEETTTSHHHHHHHHHHHTTTCEEEEEE
T ss_pred EEEEEeCCcHHHHHHHHHHHHCCCEEEEEE
Confidence 58999 669999999999999999999998
|
| >d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: MJ0490, lactate/malate dehydrogenase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=88.27 E-value=0.21 Score=40.40 Aligned_cols=29 Identities=21% Similarity=0.227 Sum_probs=26.8
Q ss_pred cEEEECC-ChHHHHHHHHHHhCCC--cEEEEc
Q 008860 74 DLFTIGA-GSGGVRASRFAANFGA--SVAICE 102 (551)
Q Consensus 74 dVvIIGg-G~aGl~aA~~l~~~G~--~V~liE 102 (551)
+|.|||+ |..|.++|+.|+..+. ++.|+|
T Consensus 2 KV~IiGA~G~VG~~~a~~l~~~~l~~el~L~D 33 (145)
T d1hyea1 2 KVTIIGASGRVGSATALLLAKEPFMKDLVLIG 33 (145)
T ss_dssp EEEEETTTSHHHHHHHHHHHTCTTCCEEEEEE
T ss_pred EEEEECCCChHHHHHHHHHHhCCccccccccc
Confidence 6999996 9999999999999885 999999
|
| >d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Rck domain from putative potassium channel Kch species: Escherichia coli [TaxId: 562]
Probab=88.14 E-value=0.58 Score=37.87 Aligned_cols=53 Identities=11% Similarity=0.007 Sum_probs=40.9
Q ss_pred CeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCCCCCHHHHHHHHHHHHhcCcEEEcC
Q 008860 246 EKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRDFVAEQMSLRGIEFHTE 306 (551)
Q Consensus 246 ~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~~~ 306 (551)
.+++|+|.|..|..++..|.+.|.+|++++..+ +-.....+.+...|+.++.+
T Consensus 4 nHiII~G~g~~g~~l~~~L~~~~~~v~vId~d~--------~~~~~~~~~~~~~~~~vi~G 56 (153)
T d1id1a_ 4 DHFIVCGHSILAINTILQLNQRGQNVTVISNLP--------EDDIKQLEQRLGDNADVIPG 56 (153)
T ss_dssp SCEEEECCSHHHHHHHHHHHHTTCCEEEEECCC--------HHHHHHHHHHHCTTCEEEES
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCEEEEeccc--------hhHHHHHHHhhcCCcEEEEc
Confidence 479999999999999999999999999998643 22333344455668888766
|
| >d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Thi4-like domain: Thiazole biosynthetic enzyme Thi4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.13 E-value=0.15 Score=47.15 Aligned_cols=35 Identities=20% Similarity=0.208 Sum_probs=31.0
Q ss_pred CeEEEEcCcHHHHHHHHHHHh--CCCeEEEEeecCcc
Q 008860 246 EKIAIVGGGYIALEFAGIFSG--LTSEVHVFIRQKKV 280 (551)
Q Consensus 246 ~~vvViG~G~~g~e~a~~l~~--~g~~Vtlv~~~~~~ 280 (551)
..|+|||+|+.|+.+|..|++ .|.+|+++++.+.+
T Consensus 51 ~~~~~~g~g~~g~~~a~~~~~~~~~~~~~~~~~~~~~ 87 (311)
T d2gjca1 51 SDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAP 87 (311)
T ss_dssp ESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSC
T ss_pred CCEEEECCCHHHHHHHHHHHHhCCCCeEEEEEcCCCC
Confidence 569999999999999999985 49999999998754
|
| >d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=88.09 E-value=0.19 Score=40.57 Aligned_cols=29 Identities=21% Similarity=0.267 Sum_probs=26.5
Q ss_pred cEEEECC-ChHHHHHHHHHHhCCC--cEEEEc
Q 008860 74 DLFTIGA-GSGGVRASRFAANFGA--SVAICE 102 (551)
Q Consensus 74 dVvIIGg-G~aGl~aA~~l~~~G~--~V~liE 102 (551)
+|+|||| |..|.++|+.|+..+. +++|+|
T Consensus 2 Kv~IiGA~G~VG~~~A~~l~~~~~~~elvLiD 33 (144)
T d1mlda1 2 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYD 33 (144)
T ss_dssp EEEEETTTSTTHHHHHHHHHTCTTCSEEEEEE
T ss_pred eEEEECCCChHHHHHHHHHHhCCccceEEEEe
Confidence 5999996 9999999999999886 799999
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.06 E-value=0.22 Score=41.45 Aligned_cols=29 Identities=28% Similarity=0.445 Sum_probs=26.9
Q ss_pred cEEEECCChHHHHHHHHHHhCCC-cEEEEc
Q 008860 74 DLFTIGAGSGGVRASRFAANFGA-SVAICE 102 (551)
Q Consensus 74 dVvIIGgG~aGl~aA~~l~~~G~-~V~liE 102 (551)
.|+|+|+|+.|+.++..+...|. +|+++|
T Consensus 29 ~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d 58 (171)
T d1pl8a2 29 KVLVCGAGPIGMVTLLVAKAMGAAQVVVTD 58 (171)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCSEEEEEE
T ss_pred EEEEECCCccHHHHHHHHHHcCCceEEecc
Confidence 59999999999999999988998 799998
|
| >d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=88.05 E-value=0.18 Score=40.52 Aligned_cols=30 Identities=13% Similarity=0.169 Sum_probs=26.7
Q ss_pred ccEEEECCChHHHHHHHHHHhCCC--cEEEEc
Q 008860 73 FDLFTIGAGSGGVRASRFAANFGA--SVAICE 102 (551)
Q Consensus 73 ~dVvIIGgG~aGl~aA~~l~~~G~--~V~liE 102 (551)
.+|.|||+|-.|.++|..|...+. ++.|+|
T Consensus 1 mKI~IIGaG~VG~~~a~~l~~~~l~~el~L~D 32 (140)
T d1a5za1 1 MKIGIVGLGRVGSSTAFALLMKGFAREMVLID 32 (140)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCSEEEEEC
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCCCEEEEEe
Confidence 369999999999999999988664 899999
|
| >d1a9xa4 c.30.1.1 (A:556-676) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains species: Escherichia coli [TaxId: 562]
Probab=88.05 E-value=0.31 Score=37.61 Aligned_cols=31 Identities=19% Similarity=0.212 Sum_probs=28.3
Q ss_pred CccEEEECCCh-----------HHHHHHHHHHhCCCcEEEEc
Q 008860 72 DFDLFTIGAGS-----------GGVRASRFAANFGASVAICE 102 (551)
Q Consensus 72 ~~dVvIIGgG~-----------aGl~aA~~l~~~G~~V~liE 102 (551)
..+|+|||+|| ++..|+..|++.|+++.++.
T Consensus 4 ~kkvlViGsGp~rIGq~~EfDy~~~~a~~aLk~~g~~~IliN 45 (121)
T d1a9xa4 4 REKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGYETIMVN 45 (121)
T ss_dssp SCEEEEECCCSCBTTBCHHHHHHHHHHHHHHHHTTCEEEEEC
T ss_pred CCEEEEECCCcCcccccchhhHHHHHHHHHHHhcCCeEEEEe
Confidence 46799999995 89999999999999999998
|
| >d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=87.96 E-value=0.24 Score=40.73 Aligned_cols=30 Identities=17% Similarity=0.278 Sum_probs=27.9
Q ss_pred ccEEEECCChHHHHHHHHHHhCCC--cEEEEc
Q 008860 73 FDLFTIGAGSGGVRASRFAANFGA--SVAICE 102 (551)
Q Consensus 73 ~dVvIIGgG~aGl~aA~~l~~~G~--~V~liE 102 (551)
.+|.|||+|..|.++|+.|...|+ ++.|+|
T Consensus 20 ~KI~IIGaG~VG~~~A~~l~~~~l~~elvL~D 51 (159)
T d2ldxa1 20 CKITVVGVGDVGMACAISILLKGLADELALVD 51 (159)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTTSCSEEEEEC
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCCCEEEEEe
Confidence 579999999999999999999876 899999
|
| >d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Nicotinamide nucleotide transhydrogenase dI component species: Rhodospirillum rubrum [TaxId: 1085]
Probab=87.95 E-value=0.3 Score=40.81 Aligned_cols=48 Identities=21% Similarity=0.222 Sum_probs=39.6
Q ss_pred CCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCccCCCCCHHHHHHHHHHHHhcCcEEE
Q 008860 245 PEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRDFVAEQMSLRGIEFH 304 (551)
Q Consensus 245 ~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~ 304 (551)
|-+|+|||+|..|...+.....+|+.|++++.+..- .+.+++.+-+++
T Consensus 29 pa~VvViGaGvaG~~Aa~~A~~lGA~V~v~D~~~~~------------~~~l~~l~~~~i 76 (183)
T d1l7da1 29 PARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAAT------------KEQVESLGGKFI 76 (183)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTT------------HHHHHHTTCEEC
T ss_pred CcEEEEEcCcHHHHHHHHHHHHcCCEEEEEeccHHH------------HHHHHHhhcceE
Confidence 679999999999999999999999999999876531 345666666665
|
| >d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Glycinamide ribonucleotide transformylase PurT, N-domain species: Escherichia coli [TaxId: 562]
Probab=87.84 E-value=0.49 Score=36.15 Aligned_cols=35 Identities=23% Similarity=0.245 Sum_probs=31.6
Q ss_pred CCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCc
Q 008860 245 PEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKK 279 (551)
Q Consensus 245 ~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~ 279 (551)
..+|.|+|+|..|..++....++|.++.++++.+.
T Consensus 11 ~~kigIlGgGQL~rMla~aA~~lG~~v~v~d~~~~ 45 (111)
T d1kjqa2 11 ATRVMLLGSGELGKEVAIECQRLGVEVIAVDRYAD 45 (111)
T ss_dssp CCEEEEESCSHHHHHHHHHHHTTTCEEEEEESSTT
T ss_pred CCEEEEEeCCHHHHHHHHHHHHCCCEEEEEcCCCC
Confidence 35899999999999999999999999999987653
|
| >d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Pyranose 2-oxidase species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]
Probab=87.83 E-value=0.23 Score=46.79 Aligned_cols=34 Identities=26% Similarity=0.326 Sum_probs=31.3
Q ss_pred eEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCcc
Q 008860 247 KIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKKV 280 (551)
Q Consensus 247 ~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~~ 280 (551)
.++|||+|..|+-+|..|++.|.+|.+++++...
T Consensus 6 DviIVGsG~aG~v~A~~La~~G~kVlvLEaG~~~ 39 (379)
T d2f5va1 6 DVVIVGSGPIGCTYARELVGAGYKVAMFDIGEID 39 (379)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCC
T ss_pred cEEEECcCHHHHHHHHHHhhCCCeEEEEecCCCC
Confidence 5899999999999999999999999999987653
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=87.79 E-value=0.23 Score=41.07 Aligned_cols=30 Identities=27% Similarity=0.260 Sum_probs=27.5
Q ss_pred ccEEEECCChHHHHHHHHHHhCCCcEEEEc
Q 008860 73 FDLFTIGAGSGGVRASRFAANFGASVAICE 102 (551)
Q Consensus 73 ~dVvIIGgG~aGl~aA~~l~~~G~~V~liE 102 (551)
-.|+|+|+|+.|+.++..++..|.+|..+|
T Consensus 29 ~~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~ 58 (166)
T d1llua2 29 QWVAISGIGGLGHVAVQYARAMGLHVAAID 58 (166)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEE
T ss_pred CEEEEeeccccHHHHHHHHHHcCCccceec
Confidence 369999999999999988888999999999
|
| >d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Rck domain from putative potassium channel Kch species: Escherichia coli [TaxId: 562]
Probab=87.61 E-value=0.26 Score=40.08 Aligned_cols=29 Identities=10% Similarity=0.114 Sum_probs=28.1
Q ss_pred cEEEECCChHHHHHHHHHHhCCCcEEEEc
Q 008860 74 DLFTIGAGSGGVRASRFAANFGASVAICE 102 (551)
Q Consensus 74 dVvIIGgG~aGl~aA~~l~~~G~~V~liE 102 (551)
.+||+|.|..|...+..|.+.|.+|++||
T Consensus 5 HiII~G~g~~g~~l~~~L~~~~~~v~vId 33 (153)
T d1id1a_ 5 HFIVCGHSILAINTILQLNQRGQNVTVIS 33 (153)
T ss_dssp CEEEECCSHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCEEEEe
Confidence 59999999999999999999999999999
|
| >d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Fumarate reductase species: Wolinella succinogenes [TaxId: 844]
Probab=87.60 E-value=0.21 Score=46.42 Aligned_cols=32 Identities=19% Similarity=0.129 Sum_probs=29.7
Q ss_pred eEEEEcCcHHHHHHHHHHHhCCCeEEEEeecC
Q 008860 247 KIAIVGGGYIALEFAGIFSGLTSEVHVFIRQK 278 (551)
Q Consensus 247 ~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~ 278 (551)
.|+|||+|+.|+-.|..+++.|.+|.++++.+
T Consensus 7 DVvVIG~G~AGl~AAl~aa~~G~~V~liEK~~ 38 (336)
T d2bs2a2 7 DSLVIGGGLAGLRAAVATQQKGLSTIVLSLIP 38 (336)
T ss_dssp SEEEECCSHHHHHHHHHHHTTTCCEEEECSSC
T ss_pred CEEEECcCHHHHHHHHHHHHCCCCEEEEecCC
Confidence 49999999999999999999999999998754
|
| >d1lqta1 c.3.1.1 (A:109-324) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Ferredoxin:NADP reductase FprA species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=87.58 E-value=1.3 Score=38.07 Aligned_cols=20 Identities=20% Similarity=0.290 Sum_probs=18.6
Q ss_pred ccEEEECCChHHHHHHHHHH
Q 008860 73 FDLFTIGAGSGGVRASRFAA 92 (551)
Q Consensus 73 ~dVvIIGgG~aGl~aA~~l~ 92 (551)
.+|+|||+|-.++=+|..|.
T Consensus 40 k~VvVIGgGNvAlD~AR~ll 59 (216)
T d1lqta1 40 ARAVVIGNGNVALDVARILL 59 (216)
T ss_dssp SEEEEECCSHHHHHHHHHHH
T ss_pred ceEEEECCCchhHhhhhhhc
Confidence 58999999999999999887
|
| >d1a9xa4 c.30.1.1 (A:556-676) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains species: Escherichia coli [TaxId: 562]
Probab=87.54 E-value=0.38 Score=37.09 Aligned_cols=35 Identities=20% Similarity=0.187 Sum_probs=29.1
Q ss_pred CCeEEEEcCcH-----------HHHHHHHHHHhCCCeEEEEeecCc
Q 008860 245 PEKIAIVGGGY-----------IALEFAGIFSGLTSEVHVFIRQKK 279 (551)
Q Consensus 245 ~~~vvViG~G~-----------~g~e~a~~l~~~g~~Vtlv~~~~~ 279 (551)
.++|+|+|+|+ .++.++..|++.|.++.++...+.
T Consensus 4 ~kkvlViGsGp~rIGq~~EfDy~~~~a~~aLk~~g~~~IliN~NPe 49 (121)
T d1a9xa4 4 REKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGYETIMVNCNPE 49 (121)
T ss_dssp SCEEEEECCCSCBTTBCHHHHHHHHHHHHHHHHTTCEEEEECCCTT
T ss_pred CCEEEEECCCcCcccccchhhHHHHHHHHHHHhcCCeEEEEecChh
Confidence 47899999986 567788899999999999987653
|
| >d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain species: Escherichia coli [TaxId: 562]
Probab=87.51 E-value=0.24 Score=35.19 Aligned_cols=34 Identities=12% Similarity=0.122 Sum_probs=30.8
Q ss_pred CeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCc
Q 008860 246 EKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKK 279 (551)
Q Consensus 246 ~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~ 279 (551)
|+|.|+|+|..|-.++....++|.++.++...+.
T Consensus 2 k~vgIlG~GQLgrMl~~Aa~~LG~~v~vldp~~~ 35 (78)
T d3etja2 2 KQVCVLGNGQLGRMLRQAGEPLGIAVWPVGLDAE 35 (78)
T ss_dssp EEEEEEBCSHHHHHHHHHHGGGTEEEEEECTTSC
T ss_pred CEEEEEcCCHHHHHHHHHHHHcCCEEEEEcCCCC
Confidence 5799999999999999999999999999987543
|
| >d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Flavocytochrome c3 (respiratory fumarate reductase) species: Shewanella frigidimarina [TaxId: 56812]
Probab=87.42 E-value=0.19 Score=46.58 Aligned_cols=33 Identities=12% Similarity=0.125 Sum_probs=30.6
Q ss_pred eEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCc
Q 008860 247 KIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKK 279 (551)
Q Consensus 247 ~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~ 279 (551)
.|+|||+|..|+-.|..+++.|.+|.++++.+.
T Consensus 21 DVvVIGaG~aGl~AA~~aa~~G~~V~vlEK~~~ 53 (317)
T d1qo8a2 21 QVLVVGAGSAGFNASLAAKKAGANVILVDKAPF 53 (317)
T ss_dssp EEEEECCSHHHHHHHHHHHHHTCCEEEECSSSS
T ss_pred CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence 599999999999999999999999999998653
|
| >d1vdca2 c.3.1.5 (A:118-243) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=87.39 E-value=0.25 Score=39.12 Aligned_cols=31 Identities=26% Similarity=0.506 Sum_probs=29.3
Q ss_pred CccEEEECCChHHHHHHHHHHhCCCcEEEEc
Q 008860 72 DFDLFTIGAGSGGVRASRFAANFGASVAICE 102 (551)
Q Consensus 72 ~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE 102 (551)
..+|+|||||-+.+-.|..|++.-.+|+||-
T Consensus 34 gk~V~VvGgGdsA~e~A~~L~~~a~~V~li~ 64 (130)
T d1vdca2 34 NKPLAVIGGGDSAMEEANFLTKYGSKVYIIH 64 (130)
T ss_dssp TSEEEEECCSHHHHHHHHHHTTTSSEEEEEC
T ss_pred CCEEEEEcCchHHHHHHHHHhCCCCcEEEEE
Confidence 4789999999999999999999889999997
|
| >d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Glycinamide ribonucleotide transformylase PurT, N-domain species: Escherichia coli [TaxId: 562]
Probab=86.82 E-value=0.49 Score=36.11 Aligned_cols=31 Identities=16% Similarity=0.285 Sum_probs=29.4
Q ss_pred CccEEEECCChHHHHHHHHHHhCCCcEEEEc
Q 008860 72 DFDLFTIGAGSGGVRASRFAANFGASVAICE 102 (551)
Q Consensus 72 ~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE 102 (551)
..+|.|||||-=|...|..+.+.|++|.++|
T Consensus 11 ~~kigIlGgGQL~rMla~aA~~lG~~v~v~d 41 (111)
T d1kjqa2 11 ATRVMLLGSGELGKEVAIECQRLGVEVIAVD 41 (111)
T ss_dssp CCEEEEESCSHHHHHHHHHHHTTTCEEEEEE
T ss_pred CCEEEEEeCCHHHHHHHHHHHHCCCEEEEEc
Confidence 3579999999999999999999999999999
|
| >d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=86.74 E-value=0.053 Score=47.91 Aligned_cols=24 Identities=21% Similarity=0.335 Sum_probs=22.2
Q ss_pred eEEEEcCcHHHHHHHHHHHhCCCe
Q 008860 247 KIAIVGGGYIALEFAGIFSGLTSE 270 (551)
Q Consensus 247 ~vvViG~G~~g~e~a~~l~~~g~~ 270 (551)
+|+|||+|.+|+-.|..|++.|.+
T Consensus 2 kV~VIGaGi~GlstA~~L~~~G~~ 25 (246)
T d1kifa1 2 RVVVIGAGVIGLSTALCIHERYHS 25 (246)
T ss_dssp EEEEECCSHHHHHHHHHHHHHHTT
T ss_pred EEEEECchHHHHHHHHHHHHCCCC
Confidence 699999999999999999998864
|
| >d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase-like protein HI0607 species: Haemophilus influenzae [TaxId: 727]
Probab=86.72 E-value=0.33 Score=40.17 Aligned_cols=31 Identities=16% Similarity=0.155 Sum_probs=28.5
Q ss_pred CccEEEECCChHHHHHHHHHHhCCC-cEEEEc
Q 008860 72 DFDLFTIGAGSGGVRASRFAANFGA-SVAICE 102 (551)
Q Consensus 72 ~~dVvIIGgG~aGl~aA~~l~~~G~-~V~liE 102 (551)
..+|+|||+|-++.+++..|.+.|. ++.|+.
T Consensus 17 ~~~vlIlGaGGaarai~~aL~~~g~~~I~I~n 48 (167)
T d1npya1 17 NAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYA 48 (167)
T ss_dssp TSCEEEECSSTTHHHHHHHHHHTTCCCEEEEC
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCCEEEEec
Confidence 4689999999999999999999996 799997
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=86.71 E-value=0.23 Score=41.21 Aligned_cols=30 Identities=17% Similarity=0.225 Sum_probs=27.2
Q ss_pred ccEEEECCChHHHHHHHHHHhCCCcEEEEc
Q 008860 73 FDLFTIGAGSGGVRASRFAANFGASVAICE 102 (551)
Q Consensus 73 ~dVvIIGgG~aGl~aA~~l~~~G~~V~liE 102 (551)
-.|+|+|+|+.|+.++..++..|.+|.+++
T Consensus 29 ~~vlI~GaG~vG~~a~q~ak~~G~~vi~~~ 58 (168)
T d1piwa2 29 KKVGIVGLGGIGSMGTLISKAMGAETYVIS 58 (168)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCEEEEEE
T ss_pred CEEEEECCCCcchhHHHHhhhccccccccc
Confidence 369999999999998888878999999999
|
| >d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Trypanosome (Leishmania mexicana) [TaxId: 5665]
Probab=86.54 E-value=0.38 Score=40.77 Aligned_cols=32 Identities=25% Similarity=0.335 Sum_probs=29.4
Q ss_pred CeEEEEcCcHHHHHHHHHHHhCCCeEEEEeec
Q 008860 246 EKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQ 277 (551)
Q Consensus 246 ~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~ 277 (551)
++++|||+|..|.-+|..|.+.|.+|+++.|.
T Consensus 8 ~KI~ViGaG~wGtAlA~~La~~g~~V~l~~r~ 39 (189)
T d1n1ea2 8 NKAVVFGSGAFGTALAMVLSKKCREVCVWHMN 39 (189)
T ss_dssp EEEEEECCSHHHHHHHHHHHTTEEEEEEECSC
T ss_pred ceEEEECCCHHHHHHHHHHHHcCCeEEEEEec
Confidence 47999999999999999999999999998763
|
| >d1a9xa3 c.30.1.1 (A:1-127) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains species: Escherichia coli [TaxId: 562]
Probab=86.43 E-value=0.34 Score=37.85 Aligned_cols=31 Identities=23% Similarity=0.303 Sum_probs=28.5
Q ss_pred CccEEEECCCh-----------HHHHHHHHHHhCCCcEEEEc
Q 008860 72 DFDLFTIGAGS-----------GGVRASRFAANFGASVAICE 102 (551)
Q Consensus 72 ~~dVvIIGgG~-----------aGl~aA~~l~~~G~~V~liE 102 (551)
..+|+|||+|| ++..|+..|++.|+++.+|.
T Consensus 7 ~kkvlilGsGp~~IGq~~EfDy~~~~a~~alke~g~~~iliN 48 (127)
T d1a9xa3 7 IKSILILGAGPIVIGQACEFDYSGAQACKALREEGYRVINVN 48 (127)
T ss_dssp CCEEEEECCCSCBTTBCTHHHHHHHHHHHHHHHHTCEEEEEC
T ss_pred CCEEEEECCCcCcccccchhHHHHHHHHHHHHHcCCeEEEec
Confidence 46899999996 79999999999999999998
|
| >d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=85.80 E-value=0.39 Score=38.98 Aligned_cols=30 Identities=13% Similarity=0.217 Sum_probs=27.0
Q ss_pred ccEEEECCChHHHHHHHHHHhCCC-cEEEEc
Q 008860 73 FDLFTIGAGSGGVRASRFAANFGA-SVAICE 102 (551)
Q Consensus 73 ~dVvIIGgG~aGl~aA~~l~~~G~-~V~liE 102 (551)
.+|.|||+|..|.++|..|.+.+. ++.|+|
T Consensus 4 ~KI~IIGaG~VG~~~a~~l~~~~l~el~L~D 34 (150)
T d1t2da1 4 AKIVLVGSGMIGGVMATLIVQKNLGDVVLFD 34 (150)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCCeEEEEe
Confidence 579999999999999998888775 899999
|
| >d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO) species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=85.72 E-value=0.84 Score=38.02 Aligned_cols=32 Identities=25% Similarity=0.363 Sum_probs=28.7
Q ss_pred eEEEE-cCcHHHHHHHHHHHhCCCeEEEEeecC
Q 008860 247 KIAIV-GGGYIALEFAGIFSGLTSEVHVFIRQK 278 (551)
Q Consensus 247 ~vvVi-G~G~~g~e~a~~l~~~g~~Vtlv~~~~ 278 (551)
+|.|+ |+|.+|..+|..|.+.|.+|++..|.+
T Consensus 2 ki~vigGaG~iG~alA~~la~~G~~V~l~~R~~ 34 (212)
T d1jaya_ 2 RVALLGGTGNLGKGLALRLATLGHEIVVGSRRE 34 (212)
T ss_dssp EEEEETTTSHHHHHHHHHHHTTTCEEEEEESSH
T ss_pred EEEEEeCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence 58899 669999999999999999999998853
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=85.70 E-value=0.31 Score=40.95 Aligned_cols=30 Identities=27% Similarity=0.341 Sum_probs=27.0
Q ss_pred ccEEEECCChHHHHHHHHHHhCCC-cEEEEc
Q 008860 73 FDLFTIGAGSGGVRASRFAANFGA-SVAICE 102 (551)
Q Consensus 73 ~dVvIIGgG~aGl~aA~~l~~~G~-~V~liE 102 (551)
-.|+|+|+|+.|+.++..+...|. +|.++|
T Consensus 30 ~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~ 60 (182)
T d1vj0a2 30 KTVVIQGAGPLGLFGVVIARSLGAENVIVIA 60 (182)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTBSEEEEEE
T ss_pred CEEEEECCCccchhheecccccccccccccc
Confidence 369999999999999999988997 799998
|
| >d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Pinoresinol-lariciresinol reductase species: Giant arborvitae (Thuja plicata) [TaxId: 3316]
Probab=85.63 E-value=0.9 Score=40.95 Aligned_cols=58 Identities=22% Similarity=0.301 Sum_probs=43.0
Q ss_pred CCeEEEEcC-cHHHHHHHHHHHhCCCeEEEEeecCccCCCCCHHHHHHHHHHHHhcCcEEEcC
Q 008860 245 PEKIAIVGG-GYIALEFAGIFSGLTSEVHVFIRQKKVLRGFDEDIRDFVAEQMSLRGIEFHTE 306 (551)
Q Consensus 245 ~~~vvViG~-G~~g~e~a~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~~~ 306 (551)
.++|+|.|+ |.+|..++..|.+.|.+|+.+.|..... +.. .......+...+++++..
T Consensus 3 k~KILVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~~~---~~~-~~~~~~~~~~~~v~~v~~ 61 (312)
T d1qyda_ 3 KSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVS---NID-KVQMLLYFKQLGAKLIEA 61 (312)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCCSS---CHH-HHHHHHHHHTTTCEEECC
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCCccc---chh-HHHHHhhhccCCcEEEEe
Confidence 357999996 9999999999999999999998865421 222 233345567778888754
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=85.34 E-value=0.37 Score=39.86 Aligned_cols=30 Identities=23% Similarity=0.280 Sum_probs=27.0
Q ss_pred ccEEEECCChHHHHHHHHHHhCCCcEEEEc
Q 008860 73 FDLFTIGAGSGGVRASRFAANFGASVAICE 102 (551)
Q Consensus 73 ~dVvIIGgG~aGl~aA~~l~~~G~~V~liE 102 (551)
-.|+|+|+|+.|+.++..++..|.++++++
T Consensus 32 ~~VlI~GaG~vG~~a~qlak~~Ga~~i~~~ 61 (168)
T d1uufa2 32 KKVGVVGIGGLGHMGIKLAHAMGAHVVAFT 61 (168)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEE
T ss_pred CEEEEeccchHHHHHHHHhhcccccchhhc
Confidence 369999999999999888888999999998
|
| >d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.59 E-value=0.49 Score=38.71 Aligned_cols=35 Identities=14% Similarity=0.145 Sum_probs=32.2
Q ss_pred CCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecC
Q 008860 244 KPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQK 278 (551)
Q Consensus 244 ~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~ 278 (551)
.+|+++|+|-|.+|-.+|..++.+|.+|.+.+..+
T Consensus 23 ~Gk~v~V~GyG~iG~g~A~~~rg~G~~V~v~e~dp 57 (163)
T d1li4a1 23 AGKVAVVAGYGDVGKGCAQALRGFGARVIITEIDP 57 (163)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred cCCEEEEeccccccHHHHHHHHhCCCeeEeeeccc
Confidence 47999999999999999999999999999998743
|
| >d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=84.50 E-value=0.42 Score=39.24 Aligned_cols=30 Identities=17% Similarity=0.180 Sum_probs=28.6
Q ss_pred ccEEEECCChHHHHHHHHHHhCCCcEEEEc
Q 008860 73 FDLFTIGAGSGGVRASRFAANFGASVAICE 102 (551)
Q Consensus 73 ~dVvIIGgG~aGl~aA~~l~~~G~~V~liE 102 (551)
.+|-|||-|.-|...|.+|.+.|++|.++|
T Consensus 2 ~kIg~IGlG~MG~~iA~~L~~~g~~v~~~d 31 (162)
T d3cuma2 2 KQIAFIGLGHMGAPMATNLLKAGYLLNVFD 31 (162)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTTCEEEEEC
T ss_pred CEEEEEEEHHHHHHHHHHHHHCCCeEEEEE
Confidence 369999999999999999999999999999
|
| >d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: GDP-mannose 6-dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=84.50 E-value=0.82 Score=38.91 Aligned_cols=32 Identities=31% Similarity=0.349 Sum_probs=29.1
Q ss_pred eEEEEcCcHHHHHHHHHHHhCCCeEEEEeecC
Q 008860 247 KIAIVGGGYIALEFAGIFSGLTSEVHVFIRQK 278 (551)
Q Consensus 247 ~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~ 278 (551)
+|.|||.|++|+-+|..|++.|.+|+.++...
T Consensus 2 kI~ViGlG~vGl~~a~~la~~g~~V~g~D~n~ 33 (202)
T d1mv8a2 2 RISIFGLGYVGAVCAGCLSARGHEVIGVDVSS 33 (202)
T ss_dssp EEEEECCSTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred EEEEECCCHhHHHHHHHHHhCCCcEEEEeCCH
Confidence 58999999999999999999999999988643
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=84.27 E-value=0.45 Score=39.63 Aligned_cols=30 Identities=23% Similarity=0.169 Sum_probs=26.8
Q ss_pred ccEEEECCChHHHHHHHHHHhCCC-cEEEEc
Q 008860 73 FDLFTIGAGSGGVRASRFAANFGA-SVAICE 102 (551)
Q Consensus 73 ~dVvIIGgG~aGl~aA~~l~~~G~-~V~liE 102 (551)
-.|+|+|+|+.|+.++..++..|. +|.++|
T Consensus 29 ~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d 59 (174)
T d1jqba2 29 SSVVVIGIGAVGLMGIAGAKLRGAGRIIGVG 59 (174)
T ss_dssp CCEEEECCSHHHHHHHHHHHTTTCSCEEEEC
T ss_pred CEEEEEcCCcchhhhhhhhhccccccccccc
Confidence 369999999999999998888997 799998
|
| >d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Salmonella typhimurium [TaxId: 90371]
Probab=84.17 E-value=0.43 Score=39.14 Aligned_cols=29 Identities=24% Similarity=0.245 Sum_probs=28.1
Q ss_pred cEEEECCChHHHHHHHHHHhCCCcEEEEc
Q 008860 74 DLFTIGAGSGGVRASRFAANFGASVAICE 102 (551)
Q Consensus 74 dVvIIGgG~aGl~aA~~l~~~G~~V~liE 102 (551)
+|-|||-|.-|...|..|++.|++|.++|
T Consensus 2 kIgiIGlG~MG~~~A~~L~~~G~~V~~~d 30 (161)
T d1vpda2 2 KVGFIGLGIMGKPMSKNLLKAGYSLVVSD 30 (161)
T ss_dssp EEEEECCSTTHHHHHHHHHHTTCEEEEEC
T ss_pred EEEEEehhHHHHHHHHHHHHCCCeEEEEe
Confidence 58999999999999999999999999999
|
| >d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose-3', 5'-epimerase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=84.04 E-value=0.45 Score=44.59 Aligned_cols=34 Identities=18% Similarity=0.153 Sum_probs=30.7
Q ss_pred CCCCccEEEECC-ChHHHHHHHHHHhCCCcEEEEc
Q 008860 69 SHYDFDLFTIGA-GSGGVRASRFAANFGASVAICE 102 (551)
Q Consensus 69 ~~~~~dVvIIGg-G~aGl~aA~~l~~~G~~V~liE 102 (551)
|.+.++|+|.|| |+.|...+..|.+.|++|+++|
T Consensus 12 ~~~nMKILVTGgsGfIGs~lv~~L~~~g~~V~~~d 46 (363)
T d2c5aa1 12 PSENLKISITGAGGFIASHIARRLKHEGHYVIASD 46 (363)
T ss_dssp TTSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEE
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEe
Confidence 445678999996 9999999999999999999998
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=83.83 E-value=0.44 Score=39.13 Aligned_cols=29 Identities=24% Similarity=0.312 Sum_probs=26.9
Q ss_pred cEEEECCChHHHHHHHHHHhCCCcEEEEc
Q 008860 74 DLFTIGAGSGGVRASRFAANFGASVAICE 102 (551)
Q Consensus 74 dVvIIGgG~aGl~aA~~l~~~G~~V~liE 102 (551)
.|+|+|+|+.|+.++..+...|.+|.+++
T Consensus 30 ~vlv~G~G~iG~~a~~~a~~~g~~v~~~~ 58 (168)
T d1rjwa2 30 WVAIYGIGGLGHVAVQYAKAMGLNVVAVD 58 (168)
T ss_dssp EEEEECCSTTHHHHHHHHHHTTCEEEEEC
T ss_pred EEEEeecccchhhhhHHHhcCCCeEeccC
Confidence 59999999999999888888999999998
|
| >d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Haemophilus influenzae [TaxId: 727]
Probab=83.82 E-value=0.45 Score=35.26 Aligned_cols=35 Identities=17% Similarity=0.246 Sum_probs=31.3
Q ss_pred CCCCCccEEEECCChHHHHH-HHHHHhCCCcEEEEc
Q 008860 68 PSHYDFDLFTIGAGSGGVRA-SRFAANFGASVAICE 102 (551)
Q Consensus 68 ~~~~~~dVvIIGgG~aGl~a-A~~l~~~G~~V~liE 102 (551)
+|....++-+||-|-+|+++ |..|.++|++|+--|
T Consensus 4 ~~~~~~~ihfiGigG~GMs~LA~~L~~~G~~VsGSD 39 (96)
T d1p3da1 4 EMRRVQQIHFIGIGGAGMSGIAEILLNEGYQISGSD 39 (96)
T ss_dssp CCTTCCEEEEETTTSTTHHHHHHHHHHHTCEEEEEE
T ss_pred cchhCCEEEEEEECHHHHHHHHHHHHhCCCEEEEEe
Confidence 45566889999999999999 899999999999999
|
| >d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain species: Escherichia coli [TaxId: 562]
Probab=83.72 E-value=0.43 Score=33.79 Aligned_cols=30 Identities=17% Similarity=0.176 Sum_probs=28.6
Q ss_pred ccEEEECCChHHHHHHHHHHhCCCcEEEEc
Q 008860 73 FDLFTIGAGSGGVRASRFAANFGASVAICE 102 (551)
Q Consensus 73 ~dVvIIGgG~aGl~aA~~l~~~G~~V~liE 102 (551)
..|.|||||-=|...+....+.|++|.++|
T Consensus 2 k~vgIlG~GQLgrMl~~Aa~~LG~~v~vld 31 (78)
T d3etja2 2 KQVCVLGNGQLGRMLRQAGEPLGIAVWPVG 31 (78)
T ss_dssp EEEEEEBCSHHHHHHHHHHGGGTEEEEEEC
T ss_pred CEEEEEcCCHHHHHHHHHHHHcCCEEEEEc
Confidence 468999999999999999999999999999
|
| >d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Haloarcula marismortui [TaxId: 2238]
Probab=83.08 E-value=0.57 Score=37.53 Aligned_cols=29 Identities=24% Similarity=0.260 Sum_probs=26.5
Q ss_pred cEEEEC-CChHHHHHHHHHHhCCC--cEEEEc
Q 008860 74 DLFTIG-AGSGGVRASRFAANFGA--SVAICE 102 (551)
Q Consensus 74 dVvIIG-gG~aGl~aA~~l~~~G~--~V~liE 102 (551)
+|.||| +|..|.++|+.|...+. ++.|+|
T Consensus 2 KV~IiGaaG~VG~~~A~~l~~~~l~~el~L~D 33 (142)
T d1o6za1 2 KVSVVGAAGTVGAAAGYNIALRDIADEVVFVD 33 (142)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCCSEEEEEC
T ss_pred eEEEECCCCcHHHHHHHHHHhCCCCCEEEEEe
Confidence 699999 69999999999999876 799998
|
| >d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Biliverdin IX beta reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.88 E-value=0.6 Score=39.80 Aligned_cols=31 Identities=23% Similarity=0.245 Sum_probs=28.7
Q ss_pred CccEEEECC-ChHHHHHHHHHHhCCCcEEEEc
Q 008860 72 DFDLFTIGA-GSGGVRASRFAANFGASVAICE 102 (551)
Q Consensus 72 ~~dVvIIGg-G~aGl~aA~~l~~~G~~V~liE 102 (551)
+.+|+|+|| |..|...+.+|.++|++|+++.
T Consensus 3 ~kkIlV~GatG~iG~~v~~~Ll~~g~~V~~~~ 34 (205)
T d1hdoa_ 3 VKKIAIFGATGQTGLTTLAQAVQAGYEVTVLV 34 (205)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEE
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCcCEEEEEE
Confidence 457999996 9999999999999999999998
|
| >d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Conserved hypothetical protein MTH1747 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=82.75 E-value=0.48 Score=38.36 Aligned_cols=29 Identities=17% Similarity=0.051 Sum_probs=27.7
Q ss_pred cEEEECCChHHHHHHHHHHhCCCcEEEEc
Q 008860 74 DLFTIGAGSGGVRASRFAANFGASVAICE 102 (551)
Q Consensus 74 dVvIIGgG~aGl~aA~~l~~~G~~V~liE 102 (551)
+|.|||.|..|...|..|++.|++|++++
T Consensus 2 kIgiIG~G~mG~~ia~~l~~~g~~v~~~~ 30 (152)
T d1i36a2 2 RVGFIGFGEVAQTLASRLRSRGVEVVTSL 30 (152)
T ss_dssp EEEEESCSHHHHHHHHHHHHTTCEEEECC
T ss_pred EEEEEcHHHHHHHHHHHHHHCCCeEEEEc
Confidence 68999999999999999999999999987
|
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=82.63 E-value=0.57 Score=39.06 Aligned_cols=29 Identities=17% Similarity=0.177 Sum_probs=26.8
Q ss_pred cEEEECCChHHHHHHHHHHhCCC-cEEEEc
Q 008860 74 DLFTIGAGSGGVRASRFAANFGA-SVAICE 102 (551)
Q Consensus 74 dVvIIGgG~aGl~aA~~l~~~G~-~V~liE 102 (551)
-|+|+|+|+.|+.++..++..|. +|..+|
T Consensus 32 tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd 61 (176)
T d1d1ta2 32 TCVVFGLGGVGLSVIMGCKSAGASRIIGID 61 (176)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCSEEEEEC
T ss_pred EEEEECCCchhHHHHHHHHHcCCceEEEec
Confidence 39999999999999999999995 799999
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=82.54 E-value=0.72 Score=39.10 Aligned_cols=30 Identities=30% Similarity=0.436 Sum_probs=25.9
Q ss_pred ccEEEECCChHHHHHHHHHHhCCC-cEEEEc
Q 008860 73 FDLFTIGAGSGGVRASRFAANFGA-SVAICE 102 (551)
Q Consensus 73 ~dVvIIGgG~aGl~aA~~l~~~G~-~V~liE 102 (551)
-.|+|+|+|+.|+.++..++..|. +|.++|
T Consensus 27 ~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d 57 (195)
T d1kola2 27 STVYVAGAGPVGLAAAASARLLGAAVVIVGD 57 (195)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSEEEEEE
T ss_pred CEEEEECcCHHHHHHHHHHHhhcccceeeec
Confidence 369999999999999998887776 788888
|
| >d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Sheep (Ovis orientalis aries) [TaxId: 9940]
Probab=82.43 E-value=0.67 Score=38.52 Aligned_cols=30 Identities=20% Similarity=0.132 Sum_probs=28.9
Q ss_pred ccEEEECCChHHHHHHHHHHhCCCcEEEEc
Q 008860 73 FDLFTIGAGSGGVRASRFAANFGASVAICE 102 (551)
Q Consensus 73 ~dVvIIGgG~aGl~aA~~l~~~G~~V~liE 102 (551)
.+|-|||-|.-|...|..|.+.|++|.++|
T Consensus 3 ~nIg~IGlG~MG~~mA~~L~~~G~~V~v~d 32 (176)
T d2pgda2 3 ADIALIGLAVMGQNLILNMNDHGFVVCAFN 32 (176)
T ss_dssp BSEEEECCSHHHHHHHHHHHHTTCCEEEEC
T ss_pred CcEEEEeEhHHHHHHHHHHHHCCCeEEEEc
Confidence 579999999999999999999999999999
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=82.37 E-value=0.58 Score=38.35 Aligned_cols=31 Identities=32% Similarity=0.327 Sum_probs=28.6
Q ss_pred eEEEEcCcHHHHHHHHHHHhCCCeEEEEeec
Q 008860 247 KIAIVGGGYIALEFAGIFSGLTSEVHVFIRQ 277 (551)
Q Consensus 247 ~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~ 277 (551)
+|.|||.|..|.-+|..|.+.|.+|+.++|.
T Consensus 2 kI~iIG~G~mG~~lA~~l~~~g~~V~~~d~~ 32 (165)
T d2f1ka2 2 KIGVVGLGLIGASLAGDLRRRGHYLIGVSRQ 32 (165)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred EEEEEeecHHHHHHHHHHHHCCCEEEEEECC
Confidence 6899999999999999999999999988774
|
| >d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=82.16 E-value=0.52 Score=39.46 Aligned_cols=31 Identities=16% Similarity=0.289 Sum_probs=28.7
Q ss_pred eEEEEcCcHHHHHHHHHHHhCCCeEEEEeec
Q 008860 247 KIAIVGGGYIALEFAGIFSGLTSEVHVFIRQ 277 (551)
Q Consensus 247 ~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~ 277 (551)
+|.|||+|..|.-+|..|.+.|.+|+++.|.
T Consensus 2 kI~ViGaG~~GtalA~~la~~g~~V~l~~r~ 32 (180)
T d1txga2 2 IVSILGAGAMGSALSVPLVDNGNEVRIWGTE 32 (180)
T ss_dssp EEEEESCCHHHHHHHHHHHHHCCEEEEECCG
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEEec
Confidence 5899999999999999999999999998774
|
| >d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Molybdenum cofactor biosynthesis protein MoeB domain: Molybdenum cofactor biosynthesis protein MoeB species: Escherichia coli [TaxId: 562]
Probab=82.09 E-value=0.44 Score=42.20 Aligned_cols=30 Identities=23% Similarity=0.470 Sum_probs=28.5
Q ss_pred ccEEEECCChHHHHHHHHHHhCCC-cEEEEc
Q 008860 73 FDLFTIGAGSGGVRASRFAANFGA-SVAICE 102 (551)
Q Consensus 73 ~dVvIIGgG~aGl~aA~~l~~~G~-~V~liE 102 (551)
.+|+|||+|.-|..+|..|++.|. +++|+|
T Consensus 31 ~~VliiG~GglGs~va~~La~~Gvg~i~lvD 61 (247)
T d1jw9b_ 31 SRVLIVGLGGLGCAASQYLASAGVGNLTLLD 61 (247)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCSEEEEEC
T ss_pred CCEEEECCCHHHHHHHHHHHHcCCCeEEEEC
Confidence 579999999999999999999997 899999
|
| >d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]
Probab=82.03 E-value=0.57 Score=44.01 Aligned_cols=33 Identities=24% Similarity=0.183 Sum_probs=30.4
Q ss_pred eEEEEcCcHHHHHHHHHHHhCCCeEEEEeecCc
Q 008860 247 KIAIVGGGYIALEFAGIFSGLTSEVHVFIRQKK 279 (551)
Q Consensus 247 ~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~~ 279 (551)
.++|||+|..|+-+|..|++.|.+|.+++++..
T Consensus 4 D~IIVGsG~aG~v~A~rLae~g~~VlvLEaG~~ 36 (360)
T d1kdga1 4 DYIIVGAGPGGIIAADRLSEAGKKVLLLERGGP 36 (360)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEECSSCC
T ss_pred CEEEECcCHHHHHHHHHHhhCCCeEEEEEccCC
Confidence 579999999999999999999999999999853
|
| >d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Trypanosoma brucei [TaxId: 5691]
Probab=81.95 E-value=0.71 Score=38.36 Aligned_cols=30 Identities=27% Similarity=0.309 Sum_probs=28.6
Q ss_pred ccEEEECCChHHHHHHHHHHhCCCcEEEEc
Q 008860 73 FDLFTIGAGSGGVRASRFAANFGASVAICE 102 (551)
Q Consensus 73 ~dVvIIGgG~aGl~aA~~l~~~G~~V~liE 102 (551)
++|-|||-|.-|...|.+|.+.|++|.++|
T Consensus 2 MkIGvIGlG~MG~~ma~~L~~~G~~V~~~d 31 (178)
T d1pgja2 2 MDVGVVGLGVMGANLALNIAEKGFKVAVFN 31 (178)
T ss_dssp BSEEEECCSHHHHHHHHHHHHTTCCEEEEC
T ss_pred CEEEEEeehHHHHHHHHHHHHCCCeEEEEE
Confidence 469999999999999999999999999999
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=81.79 E-value=0.67 Score=38.11 Aligned_cols=29 Identities=14% Similarity=0.186 Sum_probs=26.3
Q ss_pred cEEEECCChHHHHHHHHHHhCCC--cEEEEc
Q 008860 74 DLFTIGAGSGGVRASRFAANFGA--SVAICE 102 (551)
Q Consensus 74 dVvIIGgG~aGl~aA~~l~~~G~--~V~liE 102 (551)
+|.|||.|.-|.+.|..|.+.|+ +|..+|
T Consensus 3 ~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D 33 (171)
T d2g5ca2 3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYD 33 (171)
T ss_dssp EEEEESCSHHHHHHHHHHHHTTCCSEEEEEC
T ss_pred EEEEEccCHHHHHHHHHHHhcCCCeEEEEEE
Confidence 69999999999999999999886 677788
|
| >d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Haemophilus influenzae [TaxId: 727]
Probab=81.73 E-value=0.87 Score=36.63 Aligned_cols=35 Identities=26% Similarity=0.303 Sum_probs=31.4
Q ss_pred CCCeEEEEc-CcHHHHHHHHHHHhCCCeEEEEeecC
Q 008860 244 KPEKIAIVG-GGYIALEFAGIFSGLTSEVHVFIRQK 278 (551)
Q Consensus 244 ~~~~vvViG-~G~~g~e~a~~l~~~g~~Vtlv~~~~ 278 (551)
.-++|.||| .|.+|.-+|..|.+.|.+|+++++..
T Consensus 8 ~~~kI~iIGg~G~mG~~la~~L~~~G~~V~~~d~~~ 43 (152)
T d2pv7a2 8 DIHKIVIVGGYGKLGGLFARYLRASGYPISILDRED 43 (152)
T ss_dssp TCCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTC
T ss_pred CCCeEEEEcCCCHHHHHHHHHHHHcCCCcEeccccc
Confidence 357999999 69999999999999999999998754
|
| >d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.57 E-value=0.72 Score=37.69 Aligned_cols=30 Identities=30% Similarity=0.323 Sum_probs=29.0
Q ss_pred ccEEEECCChHHHHHHHHHHhCCCcEEEEc
Q 008860 73 FDLFTIGAGSGGVRASRFAANFGASVAICE 102 (551)
Q Consensus 73 ~dVvIIGgG~aGl~aA~~l~~~G~~V~liE 102 (551)
..++|||-|..|-..|..|+..|.+|++.|
T Consensus 25 k~v~V~GyG~iG~g~A~~~rg~G~~V~v~e 54 (163)
T d1li4a1 25 KVAVVAGYGDVGKGCAQALRGFGARVIITE 54 (163)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEC
T ss_pred CEEEEeccccccHHHHHHHHhCCCeeEeee
Confidence 569999999999999999999999999999
|
| >d1neka2 c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Succinate dehydogenase species: Escherichia coli [TaxId: 562]
Probab=81.41 E-value=0.4 Score=44.44 Aligned_cols=32 Identities=13% Similarity=0.113 Sum_probs=29.6
Q ss_pred eEEEEcCcHHHHHHHHHHHhCCCeEEEEeecC
Q 008860 247 KIAIVGGGYIALEFAGIFSGLTSEVHVFIRQK 278 (551)
Q Consensus 247 ~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~ 278 (551)
.|+|||+|..|+-.|..+.+.|.+|.++++.+
T Consensus 9 DVlVVG~G~AGl~AAl~aa~~G~~V~lleK~~ 40 (330)
T d1neka2 9 DAVVIGAGGAGMRAALQISQSGQTCALLSKVF 40 (330)
T ss_dssp SCEEECCSHHHHHHHHHHHHTTCCCEEECSSC
T ss_pred CEEEECcCHHHHHHHHHHHHcCCeEEEEeCCC
Confidence 58999999999999999999999999998754
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=81.38 E-value=0.88 Score=37.33 Aligned_cols=35 Identities=17% Similarity=0.105 Sum_probs=31.1
Q ss_pred CCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecC
Q 008860 244 KPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQK 278 (551)
Q Consensus 244 ~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~ 278 (551)
.+++|+|+|+|.+|+-.++.++..|.+|..+++.+
T Consensus 26 ~g~~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~~ 60 (170)
T d1e3ja2 26 LGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSP 60 (170)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred CCCEEEEEcccccchhhHhhHhhhcccccccchHH
Confidence 46799999999999999999999999999887753
|
| >d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Transcriptional repressor Rex, C-terminal domain domain: Transcriptional repressor Rex, C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=81.36 E-value=0.28 Score=38.59 Aligned_cols=32 Identities=13% Similarity=0.202 Sum_probs=24.8
Q ss_pred CCccEEEECCChHHHHHHHHHHh-CCCc-EEEEc
Q 008860 71 YDFDLFTIGAGSGGVRASRFAAN-FGAS-VAICE 102 (551)
Q Consensus 71 ~~~dVvIIGgG~aGl~aA~~l~~-~G~~-V~liE 102 (551)
++++|+|+|||-+|.+.+.++.+ .+++ |.+||
T Consensus 2 ~~~~v~I~GaG~~G~~l~~~l~~~~~~~iv~fiD 35 (126)
T d2dt5a2 2 RKWGLCIVGMGRLGSALADYPGFGESFELRGFFD 35 (126)
T ss_dssp SCEEEEEECCSHHHHHHHHCSCCCSSEEEEEEEE
T ss_pred CCceEEEEcCCHHHHHHHHhHhhcCCcEEEEEEe
Confidence 35789999999999988887654 4555 56677
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=81.30 E-value=0.83 Score=37.53 Aligned_cols=35 Identities=29% Similarity=0.221 Sum_probs=31.3
Q ss_pred CCCeEEEEcCcHHHHHHHHHHHhCCCeEEEEeecC
Q 008860 244 KPEKIAIVGGGYIALEFAGIFSGLTSEVHVFIRQK 278 (551)
Q Consensus 244 ~~~~vvViG~G~~g~e~a~~l~~~g~~Vtlv~~~~ 278 (551)
.+++|+|+|+|.+|.-.++.++..|.+|..+++++
T Consensus 27 ~g~~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~~ 61 (168)
T d1piwa2 27 PGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSS 61 (168)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSS
T ss_pred CCCEEEEECCCCcchhHHHHhhhccccccccccch
Confidence 46899999999999999999999999998888765
|
| >d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Haemophilus influenzae [TaxId: 727]
Probab=81.19 E-value=1.7 Score=31.85 Aligned_cols=72 Identities=15% Similarity=0.185 Sum_probs=50.7
Q ss_pred CCCeEEEEcCcHHHHHH-HHHHHhCCCeEEEEeecCccCCCCCHHHHHHHHHHHHhcCcEEEcCcccEEEEEcCCceEEE
Q 008860 244 KPEKIAIVGGGYIALEF-AGIFSGLTSEVHVFIRQKKVLRGFDEDIRDFVAEQMSLRGIEFHTEESPQAILKSTDGSLSV 322 (551)
Q Consensus 244 ~~~~vvViG~G~~g~e~-a~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~V 322 (551)
..+++-+||-|-+|+-. |..|.+.|.+|+-.+.... ...+.|++.|++++.+..-..+
T Consensus 7 ~~~~ihfiGigG~GMs~LA~~L~~~G~~VsGSD~~~~-----------~~~~~L~~~Gi~v~~g~~~~~i---------- 65 (96)
T d1p3da1 7 RVQQIHFIGIGGAGMSGIAEILLNEGYQISGSDIADG-----------VVTQRLAQAGAKIYIGHAEEHI---------- 65 (96)
T ss_dssp TCCEEEEETTTSTTHHHHHHHHHHHTCEEEEEESCCS-----------HHHHHHHHTTCEEEESCCGGGG----------
T ss_pred hCCEEEEEEECHHHHHHHHHHHHhCCCEEEEEeCCCC-----------hhhhHHHHCCCeEEECCccccC----------
Confidence 35789999888888665 9999999999998876431 2234566789999877543322
Q ss_pred EECCCeEEEeeEEEEecCcCC
Q 008860 323 KTNKGTVDGFSHVMFATGRRP 343 (551)
Q Consensus 323 ~~~~G~~i~~d~vi~a~G~~p 343 (551)
-.+|.||...+...
T Consensus 66 -------~~~d~vV~S~AI~~ 79 (96)
T d1p3da1 66 -------EGASVVVVSSAIKD 79 (96)
T ss_dssp -------TTCSEEEECTTSCT
T ss_pred -------CCCCEEEECCCcCC
Confidence 12478888777654
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=80.66 E-value=0.88 Score=37.69 Aligned_cols=34 Identities=9% Similarity=-0.047 Sum_probs=29.2
Q ss_pred CCCeEEEEcCcHHHHHHHHHHHhCCC-eEEEEeec
Q 008860 244 KPEKIAIVGGGYIALEFAGIFSGLTS-EVHVFIRQ 277 (551)
Q Consensus 244 ~~~~vvViG~G~~g~e~a~~l~~~g~-~Vtlv~~~ 277 (551)
.+++|+|+|+|.+|+-.++.++.+|. +|..+++.
T Consensus 27 ~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~ 61 (174)
T d1jqba2 27 MGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSR 61 (174)
T ss_dssp TTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCC
T ss_pred CCCEEEEEcCCcchhhhhhhhhcccccccccccch
Confidence 46799999999999999999999997 67777654
|
| >d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Pinoresinol-lariciresinol reductase species: Giant arborvitae (Thuja plicata) [TaxId: 3316]
Probab=80.51 E-value=0.73 Score=41.59 Aligned_cols=31 Identities=16% Similarity=0.235 Sum_probs=28.8
Q ss_pred CccEEEECC-ChHHHHHHHHHHhCCCcEEEEc
Q 008860 72 DFDLFTIGA-GSGGVRASRFAANFGASVAICE 102 (551)
Q Consensus 72 ~~dVvIIGg-G~aGl~aA~~l~~~G~~V~liE 102 (551)
+.+|+|+|| |..|...+.+|.+.|++|+++.
T Consensus 3 k~KILVtGatG~iG~~l~~~L~~~G~~V~~~~ 34 (312)
T d1qyda_ 3 KSRVLIVGGTGYIGKRIVNASISLGHPTYVLF 34 (312)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHTTCCEEEEC
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCEEEEEE
Confidence 457999997 9999999999999999999998
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=80.06 E-value=0.79 Score=38.03 Aligned_cols=30 Identities=23% Similarity=0.154 Sum_probs=26.0
Q ss_pred ccEEEECCChHHHHHHHHHHhCCCc-EEEEc
Q 008860 73 FDLFTIGAGSGGVRASRFAANFGAS-VAICE 102 (551)
Q Consensus 73 ~dVvIIGgG~aGl~aA~~l~~~G~~-V~liE 102 (551)
-.|+|+|+|+.|+.++..++..|.+ |++.|
T Consensus 30 ~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d 60 (174)
T d1e3ia2 30 STCAVFGLGCVGLSAIIGCKIAGASRIIAID 60 (174)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSEEEEEC
T ss_pred CEEEEECCChHHHHHHHHHHHhCCceeeeec
Confidence 3699999999999999999999984 66667
|