Query 008861
Match_columns 550
No_of_seqs 169 out of 379
Neff 4.2
Searched_HMMs 29240
Date Mon Mar 25 13:26:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008861.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008861hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1q79_A Poly(A) polymerase alph 100.0 1.8E-84 6.1E-89 698.2 27.2 316 2-318 188-510 (514)
2 2hhp_A Poly(A) polymerase; tem 100.0 9.7E-81 3.3E-85 671.3 27.8 309 2-314 175-530 (530)
3 4fh3_A Poly(A) RNA polymerase 99.9 1.1E-27 3.7E-32 242.7 13.0 169 9-178 132-348 (349)
4 2ikf_A RNA uridylyl transferas 99.9 2.4E-24 8.3E-29 220.8 6.8 152 11-162 158-348 (353)
5 4e8f_A Poly(A) RNA polymerase 99.9 2.8E-23 9.4E-28 217.7 12.9 171 14-185 165-383 (405)
6 3nyb_A Poly(A) RNA polymerase 99.9 4.8E-22 1.6E-26 202.2 9.8 149 12-165 138-299 (323)
7 2b4v_A RNA editing complex pro 99.7 1.3E-17 4.5E-22 178.0 7.1 150 15-166 253-441 (468)
8 3hj4_A Minor editosome-associa 99.4 1.3E-12 4.4E-17 136.8 14.4 163 14-178 134-379 (384)
9 3pq1_A Poly(A) RNA polymerase; 99.2 6.8E-11 2.3E-15 126.5 13.1 133 14-179 278-460 (464)
10 1r89_A TRNA nucleotidyltransfe 95.9 0.034 1.1E-06 59.4 10.7 173 20-230 133-319 (437)
11 1px5_A 2'-5'-oligoadenylate sy 91.2 1.5 5.2E-05 44.5 11.7 108 31-154 201-322 (349)
12 2kng_A Protein LSR2; DNA-bindi 21.8 42 0.0014 26.4 1.9 17 38-54 15-31 (55)
No 1
>1q79_A Poly(A) polymerase alpha; mRNA processing, nucleotidyl transferase, transferase; HET: 3AT; 2.15A {Bos taurus} SCOP: a.160.1.1 d.218.1.3 d.58.16.1 PDB: 1q78_A* 1f5a_A*
Probab=100.00 E-value=1.8e-84 Score=698.21 Aligned_cols=316 Identities=45% Similarity=0.775 Sum_probs=284.5
Q ss_pred CccCCCChhhhhccchhhhHHHHHHhCCChHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHHHHhhCCCCChHH
Q 008861 2 SVLNNVDEQTVRSLNGCRVADQILKHVPNVEHFRMTLRCLKFWAKRRGVYSNVTGFLGGVNWALLVARVCQLYPNAIPSM 81 (550)
Q Consensus 2 slLrnLDe~svRSLNG~RVtd~ILrlVPn~e~FR~aLR~IKlWAKrRGIYSNv~GyLGGVsWAILVArVCQLyPNas~s~ 81 (550)
++|+|||++|+|||||+|++|+|+++||+.++||.++|+||+|||+||||+|++||||||+||||||++||+|||+++++
T Consensus 188 ~~L~~ld~~~~~slng~r~~d~I~~~vp~~~~fr~llr~IK~Wak~Rgi~~~~~G~lgg~s~~lLVa~~~Ql~P~~s~~~ 267 (514)
T 1q79_A 188 SLLKNLDIRAIRSLNGCRVTDEILHLVPNIDNFRLTLRAIKLWAKRHNIYSNILGFLGGVSWAMLVARTCQLYPNAIAST 267 (514)
T ss_dssp GGGTTCCHHHHHHHHHHHHHHHHHTSSSCHHHHHHHHHHHHHHHHHTTCBCTTTTSBCHHHHHHHHHHHHHHSTTCCHHH
T ss_pred hhhcccchhhhhhhhhHHHHHHHHHHccCcHHHHHHHHHHHHHHHHcCCCccccCCccHHHHHHHHHHHHHhCCCCCHHH
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhccCCCCCceeccccccccCCCcccCCCCCCCCCCccceeecCCCCCcCcccccChhHHHHHHHHHHHHHHH
Q 008861 82 LVSRFFRVYTQWRWPNPVMLCPIEEDELGFSVWDPRKNPRDRSHHMPIITPAYPCMNSSYNVSLSTLRVMTEQFQWGNRI 161 (550)
Q Consensus 82 Ll~~FF~vYS~WdWp~PV~L~~i~~~~lg~~vWdP~~~~rdr~hlMPIITPayP~mNSt~NVS~STl~vI~eEF~Ra~~I 161 (550)
||.+||.+|++|+|++||+|++++++.+++++|+|+.+++|+.|+|||+||+||++|+|+|||++|+++|++||+||+++
T Consensus 268 LL~~FF~~y~~~dw~~pV~l~~~~~~~l~~~~w~p~~~~~dr~~~m~IidP~~P~~N~~~nVs~st~~~I~~Ef~rA~~i 347 (514)
T 1q79_A 268 LVHKFFLVFSKWEWPNPVLLKQPEECNLNLPVWDPRVNPSDRYHLMPIITPAYPQQNSTYNVSVSTRMVMVEEFKQGLAI 347 (514)
T ss_dssp HHHHHHHHHHSCCTTSCBCSSCCCCCSSCCCCCCTTTCGGGGGCSSCBBCSSSSCCBTTTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCCCeEecccCCCCCCCcccCCccCCcCcccceeEeCCCCCCCcccccCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999988899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcccchhhhcCCcchhhccccEEEEEEEeCChhhhhhhhhhhhhhHHHHHHHHhhcCCCceeecCCCCCCCCCCC
Q 008861 162 CEEIELNKAQWSALFEPYLFFEAYKNYLQVDIVAADADDLLTWKGWVESRFRQLTLKIERDTNGLLQCHPYPNEYIDPSK 241 (550)
Q Consensus 162 l~~i~~~~~~W~~LFep~~FF~~Yk~YL~I~v~a~s~ed~~~W~GwVESRlR~Lv~~LE~~~~~~l~ahp~P~~f~d~~~ 241 (550)
+++|..++.+|++||+|++||.+|++||+|+|++.+++++.+|.||||||||.|+.+||+. +++..|||||++|.+...
T Consensus 348 l~~i~~~~~~w~~Lf~~~~ff~~y~~yl~v~~~a~~~~~~~~w~G~veSr~r~Lv~~le~~-~~i~~a~~~P~~f~~~~~ 426 (514)
T 1q79_A 348 TDEILLSKAEWSKLFEAPNFFQKYKHYIVLLASAPTEKQRLEWVGLVESKIRILVGSLEKN-EFITLAHVNPQSFPAPKE 426 (514)
T ss_dssp HHHHHTTSSCHHHHTCCCCHHHHCSEEEEEEEEESSHHHHHHHHHHHHTTHHHHHHHHHTS-TTEEEEEECSCCEECCCS
T ss_pred HHHHhcCCCCHHHHhCCcchhhhcceEEEEEEEECCHHHhhhheehhhhhHHHHHHHhccC-CCceeeecCccccCCccc
Confidence 9999999999999999999999999999999999999999999999999999999999985 445569999999987643
Q ss_pred ----CCCcceEEEeeeecc---CCCCCccceeccHHHHHHHHHHHhhhccCCCceEEEEEEeccCCCCCCcCCCCCcCCC
Q 008861 242 ----PCPNSAFFMGLRRKE---GVTGKERQQFDIRGTVDNFREEIGMYMFWKPGMDIYVSHVRRRQLPSFVFPDGYKRPR 314 (550)
Q Consensus 242 ----~~~~~~ffIGL~~~~---~~~~~~~~~~DL~~~v~eF~~~I~~~~~~~~gm~I~Vs~VkrsqLP~~V~~~g~k~~~ 314 (550)
..+.++|||||.++. ....+.+.++||+.++++|++.|++|..|+++|+|+|+|||++|||++||++|++|+|
T Consensus 427 ~~~~~~~~~~~~iGL~~~~~~~~~~~~~~~~~di~~~~~~F~~~~~~~~~~~~~~~i~v~~vk~~~Lp~~v~~~~~~~~~ 506 (514)
T 1q79_A 427 NPDKEEFRTMWVIGLVFKKTENSENLSVDLTYDIQSFTDTVYRQAINSKMFEVDMKIAAMHVKRKQLHQLLPSHVLQKKK 506 (514)
T ss_dssp CTTSCCEEEEEEEEEEEC----------CCHHHHHHHHHHHHHHHHHTTCCCTTCEEEEEEEEHHHHGGGCC--------
T ss_pred cccCCceeEEEEEEEeecccccccccCcccccchHHHHHHHHHHHhhccccCCCcEEEEEEechHHCchhhcchhccCCC
Confidence 356789999999865 2222345679999999999999999999999999999999999999999999999988
Q ss_pred CCCc
Q 008861 315 PSRH 318 (550)
Q Consensus 315 ~~~~ 318 (550)
+.+.
T Consensus 507 ~~~~ 510 (514)
T 1q79_A 507 KHST 510 (514)
T ss_dssp ----
T ss_pred CCCc
Confidence 7543
No 2
>2hhp_A Poly(A) polymerase; template-independent RNA polymerase, transferase; HET: FLC; 1.80A {Saccharomyces cerevisiae} SCOP: a.160.1.1 d.218.1.3 d.58.16.1 PDB: 1fa0_A* 3c66_A* 2o1p_A 2q66_A*
Probab=100.00 E-value=9.7e-81 Score=671.28 Aligned_cols=309 Identities=39% Similarity=0.749 Sum_probs=287.8
Q ss_pred CccCCCChhhhhccchhhhHHHHHHhCCChHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHHHHhhCCCCChHH
Q 008861 2 SVLNNVDEQTVRSLNGCRVADQILKHVPNVEHFRMTLRCLKFWAKRRGVYSNVTGFLGGVNWALLVARVCQLYPNAIPSM 81 (550)
Q Consensus 2 slLrnLDe~svRSLNG~RVtd~ILrlVPn~e~FR~aLR~IKlWAKrRGIYSNv~GyLGGVsWAILVArVCQLyPNas~s~ 81 (550)
++|+|||++|+|||||+|++|+|+++||+.++||.++|+||+|||+||||+|.+|||||++|+||||++||+|||+++++
T Consensus 175 ~~L~~ld~~~~~slng~r~~d~I~~~vp~~~~fr~ll~~IK~Wak~Rgl~~~~~G~lgg~~~~~LVa~~lQl~P~~s~~~ 254 (530)
T 2hhp_A 175 NLLRNLDEKDLRALNGTRVTDEILELVPKPNVFRIALRAIKLWAQRRAVYANIFGFPGGVAWAMLVARICQLYPNACSAV 254 (530)
T ss_dssp GGGTTCCHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHTTCCCGGGTSCCHHHHHHHHHHHHHHSTTCCHHH
T ss_pred hhhhccchhhhhccchHHHHHHHHHHccCcHHHHHHHHHHHHHHHHcCCCcccccCCcHHHHHHHHHHHHhcCCCCCHHH
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhccCCCCCceeccccccccCCCcccCCCCCCCCCCccceeecCCCCCcCcccccChhHHHHHHHHHHHHHHH
Q 008861 82 LVSRFFRVYTQWRWPNPVMLCPIEEDELGFSVWDPRKNPRDRSHHMPIITPAYPCMNSSYNVSLSTLRVMTEQFQWGNRI 161 (550)
Q Consensus 82 Ll~~FF~vYS~WdWp~PV~L~~i~~~~lg~~vWdP~~~~rdr~hlMPIITPayP~mNSt~NVS~STl~vI~eEF~Ra~~I 161 (550)
||.+||.+|++|+|++||++++++++.+++++|+|+.|++|++|+|||+||+||++|+|+|||++|+++|++||+||+++
T Consensus 255 LL~~FF~~y~~~dw~~pV~l~~~~~g~~~~~~w~p~~~~~d~~~~m~Ii~P~~P~~N~a~nVs~st~~~I~~Ef~rA~~l 334 (530)
T 2hhp_A 255 ILNRFFIILSEWNWPQPVILKPIEDGPLQVRVWNPKIYAQDRSHRMPVITPAYPSMCATHNITESTKKVILQEFVRGVQI 334 (530)
T ss_dssp HHHHHHHHHHHCCTTSCEESSCCCCCSSCSCCCCTTTCHHHHTCSSCEECSSSSCCBTTTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCCceEecccCCCCccccccCcccCCCCCccceeEECCCCCCCccCccCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999888889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcccchhhhcCCcchhhccccEEEEEEEeC-ChhhhhhhhhhhhhhHHHHHHHHhhcCCCceeecCCCCCCCCC-
Q 008861 162 CEEIELNKAQWSALFEPYLFFEAYKNYLQVDIVAA-DADDLLTWKGWVESRFRQLTLKIERDTNGLLQCHPYPNEYIDP- 239 (550)
Q Consensus 162 l~~i~~~~~~W~~LFep~~FF~~Yk~YL~I~v~a~-s~ed~~~W~GwVESRlR~Lv~~LE~~~~~~l~ahp~P~~f~d~- 239 (550)
++++..++.+|.+||+|++||.+|+|||+|+++++ +++++..|.||||||+|.|+.+||+ .+++..|||||++|.+.
T Consensus 335 l~~i~~~~~~w~~Lf~~~~ff~~y~~~l~i~~~~~g~~~~~~~w~G~veSr~r~Lv~~Le~-~~~i~~a~~~p~~f~~~~ 413 (530)
T 2hhp_A 335 TNDIFSNKKSWANLFEKNDFFFRYKFYLEITAYTRGSDEQHLKWSGLVESKVRLLVMKLEV-LAGIKIAHPFTKPFESSY 413 (530)
T ss_dssp HHHHHTTSSCHHHHTCCCCHHHHCSEEEEEEEEEESCHHHHHHHHHHHHHHHHHHHHHHHT-STTEEEEEECSSCEEEEE
T ss_pred HHHHhcCCCCHHHHcCCCChHHhcCeEEEEEEEecCCHHHHhhhcchHHHHHHHHHHHhhc-ccCceeeecCCcccCccc
Confidence 99999888999999999999999999999999998 9999999999999999999999998 56777899999998421
Q ss_pred ------------------------------------C------CCCCcceEEEeeeeccCCCCCccceeccHHHHHHHHH
Q 008861 240 ------------------------------------S------KPCPNSAFFMGLRRKEGVTGKERQQFDIRGTVDNFRE 277 (550)
Q Consensus 240 ------------------------------------~------~~~~~~~ffIGL~~~~~~~~~~~~~~DL~~~v~eF~~ 277 (550)
+ ...+.++|||||.++.. ...+++||+.++++|++
T Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~igl~~~~~---~~~~~~di~~~~~~F~~ 490 (530)
T 2hhp_A 414 CCPTEDDYEMIQDKYGSHKTETALNALKLVTDENKEEESIKDAPKAYLSTMYIGLDFNIE---NKKEKVDIHIPCTEFVN 490 (530)
T ss_dssp ECCSSSHHHHHHHHCSCHHHHTTCCSCC---------------CEEEEEEEEEEEEEC-------CCCCCCHHHHHHHHH
T ss_pred cccchhhhhhhhccccccccccccccccccccccccccccccccceeeEEEEEEEeecCC---CCCceEeChhHHHHHHH
Confidence 0 12345789999998643 23578999999999999
Q ss_pred HHhhhcc-CCCc-eE-EEEEEeccCCCCCCcCCCCCcCCC
Q 008861 278 EIGMYMF-WKPG-MD-IYVSHVRRRQLPSFVFPDGYKRPR 314 (550)
Q Consensus 278 ~I~~~~~-~~~g-m~-I~Vs~VkrsqLP~~V~~~g~k~~~ 314 (550)
.|++|.. |+++ |+ |.|+|||++|||++||++|++||+
T Consensus 491 ~~~~~~~~~~~~~~~~~~v~~v~~~~lp~~v~~~~~~~~~ 530 (530)
T 2hhp_A 491 LCRSFNEDYGDHKVFNLALRFVKGYDLPDEVFDENEKRPS 530 (530)
T ss_dssp HHHHTSTTTTCSSSEEEEEEEEEGGGCCGGGSCTTSCCCC
T ss_pred HHHhhhhhcccCCcceEEEEEechhhCCHhhccCCCcCCC
Confidence 9999987 7776 89 999999999999999999999874
No 3
>4fh3_A Poly(A) RNA polymerase protein CID1; nucleotidyltransferase, poly(U) polymerase, transferase; 2.00A {Schizosaccharomyces pombe} PDB: 4fh5_A* 4fhp_A* 4fhv_A* 4fhw_A* 4fhy_A* 4fhx_A* 4ep7_A*
Probab=99.95 E-value=1.1e-27 Score=242.66 Aligned_cols=169 Identities=18% Similarity=0.179 Sum_probs=136.0
Q ss_pred hhhhhccchhhhHHHHHHhCCChHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHHHHhh------CCC------
Q 008861 9 EQTVRSLNGCRVADQILKHVPNVEHFRMTLRCLKFWAKRRGVYSNVTGFLGGVNWALLVARVCQL------YPN------ 76 (550)
Q Consensus 9 e~svRSLNG~RVtd~ILrlVPn~e~FR~aLR~IKlWAKrRGIYSNv~GyLGGVsWAILVArVCQL------yPN------ 76 (550)
+-|+...+|+|.++.|..+++....||.++++||+|||+||||++..|+|||++|++||++++|. +|+
T Consensus 132 Dis~~~~~g~~~t~ll~~~~~~~~~~r~l~~~iK~wak~~~l~~~~~G~lssy~l~lmvi~fLQ~~~~pp~lP~l~~~~~ 211 (349)
T 4fh3_A 132 DIGFNNRLAIHNTLLLSSYTKLDARLKPMVLLVKHWAKRKQINSPYFGTLSSYGYVLMVLYYLIHVIKPPVFPNLLLSPL 211 (349)
T ss_dssp EEEESCHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHTTCCCGGGTSCCHHHHHHHHHHHHHHTSSSCSSCCSSSCTT
T ss_pred ecCcCcchHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHcCCCCcCCCCCChHHHHHHHHHHHHhccCCCcCchhhhccc
Confidence 45778899999999999999999999999999999999999999999999999999999999984 343
Q ss_pred --------------------------CChHHHHHHHHHhhc-cCCCCCceecccccccc---------CCCcccCCCCCC
Q 008861 77 --------------------------AIPSMLVSRFFRVYT-QWRWPNPVMLCPIEEDE---------LGFSVWDPRKNP 120 (550)
Q Consensus 77 --------------------------as~s~Ll~~FF~vYS-~WdWp~PV~L~~i~~~~---------lg~~vWdP~~~~ 120 (550)
.+.+.|+..||++|+ .|+|+++|+......+- .....|++..+.
T Consensus 212 ~~~~~~~~~~~~f~~~~~~~~~~~n~~slg~LL~~FF~~Y~~~Fd~~~~vIsi~~~~~~~~k~~k~~~~~~~~~~~~~~~ 291 (349)
T 4fh3_A 212 KQEKIVDGFDVGFDDKLEDIPPSQNYSSLGSLLHGFFRFYAYKFEPREKVVTFRRPDGYLTKQEKGWTSATEHTGSADQI 291 (349)
T ss_dssp CCCCEETTEECCCCCCGGGSCCCSCCCCHHHHHHHHHHHHHHTCCTTTBCBCSSSTTCCCBHHHHTCC------------
T ss_pred cccccccCcccccccchhhcccccCcccHHHHHHHHHHHhhhccCCCCceEEecCCCCccchHHhcccccccccCccccc
Confidence 357899999999998 69999998864332211 112334444455
Q ss_pred CCCCccceeecCCCCCcCcccccChhHHHHHHHHHHHHHHHHHHHhhcccchhhhcCC
Q 008861 121 RDRSHHMPIITPAYPCMNSSYNVSLSTLRVMTEQFQWGNRICEEIELNKAQWSALFEP 178 (550)
Q Consensus 121 rdr~hlMPIITPayP~mNSt~NVS~STl~vI~eEF~Ra~~Il~~i~~~~~~W~~LFep 178 (550)
....++|+|++|++|.+|+|++|+..++..|++||+||++++++.. .+.+|++||+.
T Consensus 292 ~~~~~~l~IeDPf~~~~Nvar~Vs~~~~~~I~~eF~~A~~~L~~~~-~~~~~~~lfe~ 348 (349)
T 4fh3_A 292 IKDRYILAIEDPFEISHNVGRTVSSSGLYRIRGEFMAASRLLNSRS-YPIPYDSLFEE 348 (349)
T ss_dssp ---CCSSCBBCSSSTTCBGGGGCCHHHHHHHHHHHHHHHHHHHCCS-SSCCGGGGGSC
T ss_pred CCCCceEEEECCCCCCCcCCCCCCHHHHHHHHHHHHHHHHHHhCcc-cCCCHHHHhhc
Confidence 5667899999999999999999999999999999999999998643 35689999985
No 4
>2ikf_A RNA uridylyl transferase; tutase, nucleotidyltransferase, UTP-binding, RNA editing; HET: UTP; 2.00A {Trypanosoma brucei} PDB: 2nom_A* 2q0c_A* 2q0d_A* 2q0e_A* 2q0f_A* 2q0g_A*
Probab=99.89 E-value=2.4e-24 Score=220.84 Aligned_cols=152 Identities=16% Similarity=0.143 Sum_probs=126.2
Q ss_pred hhhccchhhhHHHHHHhCCChHHHHHHHHHHHHHHHHhccccccc-cccchHHHHHHHHHHHhh------CC--------
Q 008861 11 TVRSLNGCRVADQILKHVPNVEHFRMTLRCLKFWAKRRGVYSNVT-GFLGGVNWALLVARVCQL------YP-------- 75 (550)
Q Consensus 11 svRSLNG~RVtd~ILrlVPn~e~FR~aLR~IKlWAKrRGIYSNv~-GyLGGVsWAILVArVCQL------yP-------- 75 (550)
|+...+|++.++.|..++.....||.++++||+|||+||||++.. |+|||++|++||+++||. +|
T Consensus 158 s~~n~~g~~~t~ll~~~~~~~p~~r~l~~~iK~wa~~r~l~~~~~gG~lssy~l~lmvi~~LQ~~~~~P~lp~l~~~~~~ 237 (353)
T 2ikf_A 158 TAYRRNGVRNSALLRAYFEQNPPCRWLSMSIKRWSKQTGLNASVIGGSITSYGFNLMVVYYLLQRNHLQFVPPSTIDVSR 237 (353)
T ss_dssp EESCCHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTCBTTSTTCCBCHHHHHHHHHHHHHHTTSSCCCCGGGCCGGG
T ss_pred EecCccHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCCCCCCCCCCchHHHHHHHHHHHHHhcCCCCCcCccccChhh
Confidence 445688999999999999888899999999999999999999999 999999999999999984 23
Q ss_pred ----------------CCChHHHHHHHHHhhc-cCCCCCceeccccccc-cCCCcccCCC------CCCCCCCccceeec
Q 008861 76 ----------------NAIPSMLVSRFFRVYT-QWRWPNPVMLCPIEED-ELGFSVWDPR------KNPRDRSHHMPIIT 131 (550)
Q Consensus 76 ----------------Nas~s~Ll~~FF~vYS-~WdWp~PV~L~~i~~~-~lg~~vWdP~------~~~rdr~hlMPIIT 131 (550)
+.+...|+..||++|+ +|+|+++|+.-..... ......|+++ .++.++.+.|+|++
T Consensus 238 ~~~~~~~~~~~~~~~~~~slg~LL~~Ff~~Y~~~fd~~~~vIsi~~~~~~~k~~~~w~~~~~~~~~~~~~~~~~~l~IeD 317 (353)
T 2ikf_A 238 VEPLPPHLPLEEPADEGLELGTQVLDFLHFFLHEFDSDKQVISLNRPGITTKEELDWTKSAEDFARMNGEKVHYQWCIED 317 (353)
T ss_dssp SCSSCCCCCCCCCTTTTHHHHHHHHHHHHHHHHTSCTTTEEECSSSSSCEEHHHHTCSHHHHTTCEETTEECCCSSEEBC
T ss_pred ccCCCcCCccccCCCCcccHHHHHHHHHHHhccccCcCceEEEcCCCcceechhhcccccccccccccCCCCcceEEEEC
Confidence 2345799999999999 8999999875321100 0111367742 22334668999999
Q ss_pred CCCCCcCcccccChhHHHHHHHHHHHHHHHH
Q 008861 132 PAYPCMNSSYNVSLSTLRVMTEQFQWGNRIC 162 (550)
Q Consensus 132 PayP~mNSt~NVS~STl~vI~eEF~Ra~~Il 162 (550)
|+.|.+|++++|+.+++..|++||+||++++
T Consensus 318 P~~~~~N~~r~v~~~~~~~i~~~f~~A~~~~ 348 (353)
T 2ikf_A 318 PYELNLNVGRNVTPLKRDFLRRHLEKARDTA 348 (353)
T ss_dssp SSSTTCBTTTTCCHHHHHHHHHHHHHHHTTT
T ss_pred CCCCCCcccCCCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999876
No 5
>4e8f_A Poly(A) RNA polymerase protein CID1; beta polymerase-like nucleotidyl transferase, terminal uridi transferase, UTP, cytoplasmic; 2.60A {Schizosaccharomyces pombe 972h-} PDB: 4e7x_A* 4e80_A
Probab=99.89 E-value=2.8e-23 Score=217.66 Aligned_cols=171 Identities=19% Similarity=0.210 Sum_probs=137.7
Q ss_pred ccchhhhHHHHHHhCCChHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHHHH-hh-----CCC-----------
Q 008861 14 SLNGCRVADQILKHVPNVEHFRMTLRCLKFWAKRRGVYSNVTGFLGGVNWALLVARVC-QL-----YPN----------- 76 (550)
Q Consensus 14 SLNG~RVtd~ILrlVPn~e~FR~aLR~IKlWAKrRGIYSNv~GyLGGVsWAILVArVC-QL-----yPN----------- 76 (550)
..+|++.+..|..++.-...||.++++||+|||+||||++..|+|||++|++||++++ |. +|+
T Consensus 165 n~~g~~~t~ll~~y~~~~p~~r~Lv~~lK~wak~rgl~~~~~GglsSY~l~lmvi~fLqQ~~~ppvlP~Lq~~~~~~~~~ 244 (405)
T 4e8f_A 165 NRLAIHNTLLLSSYTKLDARLKPMVLLVKHWAKRKQINSPYFGTLSSYGYVLMVLYYLIHVIKPPVFPNLLLSPLKQEKI 244 (405)
T ss_dssp CHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHTTCCCTTTTSCCHHHHHHHHHHHHHHTSSSCSSCCSSSCTTCCCCE
T ss_pred ccchHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHcCCCcCcCCCcChHHHHHHHHHHHHhccCCCcCCchhhcccccccc
Confidence 3568999998888776667899999999999999999999999999999999999999 73 232
Q ss_pred ---------------------CChHHHHHHHHHhhc-cCCCCCceeccccccccCC--CcccCCCCC-------CCCCCc
Q 008861 77 ---------------------AIPSMLVSRFFRVYT-QWRWPNPVMLCPIEEDELG--FSVWDPRKN-------PRDRSH 125 (550)
Q Consensus 77 ---------------------as~s~Ll~~FF~vYS-~WdWp~PV~L~~i~~~~lg--~~vWdP~~~-------~rdr~h 125 (550)
.+...|+..||++|+ .|+|.+.|+......+.+. .+.|++... ...+++
T Consensus 245 ~~g~~~~f~~~l~~~~~~~n~~slg~LL~~FF~yY~~~Fd~~~~vIsir~~g~~~~K~~k~w~~~~~~~g~~~~~~~~~~ 324 (405)
T 4e8f_A 245 VDGFDVGFDDKLEDIPPSQNYSSLGSLLHGFFRFYAYKFEPREKVVTFRRPDGYLTKQEKGWTSATEHTGSADQIIKDRY 324 (405)
T ss_dssp ETTEECCCCCCGGGSCCCSCCCCHHHHHHHHHHHHHHTCCTTTBEECSSSTTCCCBHHHHTCCC-------------CCC
T ss_pred cCCeeeccccchhhhccccccccHHHHHHHHHHHHhcccCCCCcEEEEecCCcccccccccccccccccccccccccCCc
Confidence 467899999999999 8999998876431111111 246876521 123578
Q ss_pred cceeecCCCCCcCcccccChhHHHHHHHHHHHHHHHHHHHhhcccchhhhcCCcchhhcc
Q 008861 126 HMPIITPAYPCMNSSYNVSLSTLRVMTEQFQWGNRICEEIELNKAQWSALFEPYLFFEAY 185 (550)
Q Consensus 126 lMPIITPayP~mNSt~NVS~STl~vI~eEF~Ra~~Il~~i~~~~~~W~~LFep~~FF~~Y 185 (550)
.|+|.+|+.|.+|++++|+..+++.|++||+||++++.+... +.+|+.||+++++..+.
T Consensus 325 ~L~IeDPf~~~~Nv~r~vs~~~~~~I~~eF~rA~~iL~~~~~-~~~w~~Lf~~~~~~~~~ 383 (405)
T 4e8f_A 325 ILAIEDPFEISHNVGRTVSSSGLYRIRGEFMAASRLLNSRSY-PIPYDSLFEEAPIPPRR 383 (405)
T ss_dssp SSEEBCSSSTTCBTTTTCCHHHHHHHHHHHHHHHHHHTCSSS-SCCGGGGGSCCCCC---
T ss_pred eEEEECCCCcccccccCCCHHHHHHHHHHHHHHHHHHhhhcc-CCCHHHHhCcCCCcccc
Confidence 999999999999999999999999999999999999987532 57899999999998753
No 6
>3nyb_A Poly(A) RNA polymerase protein 2; polya RNA polymerase, zinc knuckle protein, RNA surveillance binds to TRF4P/AIR2P heterodimer; 2.70A {Saccharomyces cerevisiae}
Probab=99.86 E-value=4.8e-22 Score=202.18 Aligned_cols=149 Identities=19% Similarity=0.260 Sum_probs=125.0
Q ss_pred hhccchhhhHHHHHHhCCChHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHHHHhhCCCC---------ChHHH
Q 008861 12 VRSLNGCRVADQILKHVPNVEHFRMTLRCLKFWAKRRGVYSNVTGFLGGVNWALLVARVCQLYPNA---------IPSML 82 (550)
Q Consensus 12 vRSLNG~RVtd~ILrlVPn~e~FR~aLR~IKlWAKrRGIYSNv~GyLGGVsWAILVArVCQLyPNa---------s~s~L 82 (550)
.-..+|+|.++.|.++++....||.++++||+|||+||||++..|+|||++|++||+++||++|+. +...|
T Consensus 138 ~~~~~g~~~t~li~~~~~~~~~~r~lv~~iK~wak~r~l~~~~~G~lssy~l~lmvi~fLQ~~p~~~~~~~~~~~~lg~L 217 (323)
T 3nyb_A 138 FERTNGIEAAKLIREWLDDTPGLRELVLIVKQFLHARRLNNVHTGGLGGFSIICLVFSFLHMHPRIITNEIDPKDNLGVL 217 (323)
T ss_dssp SSCSSTTHHHHHHHHHHHSCTTHHHHHHHHHHHHHHTTCSCGGGTCCCHHHHHHHHHHHHHTCHHHHTTCBCGGGCHHHH
T ss_pred ecCcHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHcCCCCccCCCcCHHHHHHHHHHHHHhCCccCcccCCccccHHHH
Confidence 345799999999999999999999999999999999999999999999999999999999999853 45799
Q ss_pred HHHHHHhhc-cCCCCCceecccccccc---CCCcccCCCCCCCCCCccceeecCCCCCcCcccccChhHHHHHHHHHHHH
Q 008861 83 VSRFFRVYT-QWRWPNPVMLCPIEEDE---LGFSVWDPRKNPRDRSHHMPIITPAYPCMNSSYNVSLSTLRVMTEQFQWG 158 (550)
Q Consensus 83 l~~FF~vYS-~WdWp~PV~L~~i~~~~---lg~~vWdP~~~~rdr~hlMPIITPayP~mNSt~NVS~STl~vI~eEF~Ra 158 (550)
|..||++|+ +|+|++.++-- ..+. ..-..|++- ++..+.+.|+|.+|+.|..|.+.++ ..++.|++||.+|
T Consensus 218 L~~Ff~~Y~~~Fd~~~~~Isv--~~g~~~~~~k~~~~~~-~~~~~~~~l~IeDP~~~~~nigr~~--~~~~~I~~~F~~A 292 (323)
T 3nyb_A 218 LIEFFELYGKNFGYDDVALGS--SDGYPVYFPKSTWSAI-QPIKNPFSLAIQDPGDESNNISRGS--FNIRDIKKAFAGA 292 (323)
T ss_dssp HHHHHHHHHHTCCTTTEEEEE--SSSCEEEEEGGGCGGG-CSCSCSSSCCBEETTEEEEETTTTC--TTHHHHHHHHHHH
T ss_pred HHHHHHHhccccCCCCcEEEE--ecCCcceeeHHhcccc-cccCCCceEEEeCCCCCCcccccch--HHHHHHHHHHHHH
Confidence 999999999 99999987642 2221 112356542 2223467999999999999999885 4688999999999
Q ss_pred HHHHHHH
Q 008861 159 NRICEEI 165 (550)
Q Consensus 159 ~~Il~~i 165 (550)
.+++++-
T Consensus 293 ~~~L~~~ 299 (323)
T 3nyb_A 293 FDLLTNR 299 (323)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9999863
No 7
>2b4v_A RNA editing complex protein MP57; tbret2, TBMP57, terminal uridylyl transferase, editosome, transferase/RNA binding protein complex; 1.80A {Trypanosoma brucei} SCOP: a.160.1.4 d.218.1.10 PDB: 2b51_A* 2b56_A*
Probab=99.69 E-value=1.3e-17 Score=178.03 Aligned_cols=150 Identities=16% Similarity=0.172 Sum_probs=115.7
Q ss_pred cchhhhHHHHHHhCCChHH-HHHHHHHHHHHHHHhccccccccccchHHHHHHHHHHHhhC-----------------CC
Q 008861 15 LNGCRVADQILKHVPNVEH-FRMTLRCLKFWAKRRGVYSNVTGFLGGVNWALLVARVCQLY-----------------PN 76 (550)
Q Consensus 15 LNG~RVtd~ILrlVPn~e~-FR~aLR~IKlWAKrRGIYSNv~GyLGGVsWAILVArVCQLy-----------------PN 76 (550)
.+|++.+..|...+--... ||.+..+||+|||+|||+....|+||+++|++||.+..|.. |+
T Consensus 253 ~~gi~nS~ll~~y~~~dpr~~r~Lvl~vK~Wak~r~Ln~~~~G~LsSYal~lMVI~fLQ~~~~lP~v~P~vlP~lq~l~~ 332 (468)
T 2b4v_A 253 GYGVKNSYLIRHYLHNGPVAARHTAMAVKAWGKATNVGAGSGAMLTSYAVTVMFIYYLLVTRQVLWVDPWSLPHPAHLPR 332 (468)
T ss_dssp SHHHHHHHHHHHHHHHSCTTHHHHHHHHHHHHHTCC-----CCSSCHHHHHHHHHHHHHHTTSSCCCCGGGSCCGGGSCS
T ss_pred hhHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHcCCCCccCCCccHHHHHHHHHHHHHhcCcCCCCCcccccchhhccc
Confidence 6899999988876554456 99999999999999999999999999999999999998753 21
Q ss_pred ------------CChHHHHHHHHHhhc-cCCCCCceecccccccc---CCCcccCCCCCC-CCCCccceeecCCCC----
Q 008861 77 ------------AIPSMLVSRFFRVYT-QWRWPNPVMLCPIEEDE---LGFSVWDPRKNP-RDRSHHMPIITPAYP---- 135 (550)
Q Consensus 77 ------------as~s~Ll~~FF~vYS-~WdWp~PV~L~~i~~~~---lg~~vWdP~~~~-rdr~hlMPIITPayP---- 135 (550)
.+...|+..||++|+ .|+|.+.|+--. .+. .....|+...+. ....+.|+|.+|+.|
T Consensus 333 ~~~~~p~~~~n~~sLg~LL~~FF~yYg~~Fd~~~~vISir--~g~~~~K~~~~w~~~~n~~~~~~~~L~IeDPfd~~~~~ 410 (468)
T 2b4v_A 333 YPDFSPLYDCDPTELGRLLHGFFIFYAHHFDYEREVVSLN--RNRRSYRSDIGWNFPQNKKGTFSYNFCIEDPYEDVGTG 410 (468)
T ss_dssp SCCCCCCCCCCHHHHHHHHHHHHHHHHHSSCTTTEEBCSS--SSSCEEHHHHTCCCGGGEETTEECSSCBBCSSTTTTTT
T ss_pred ccCCCcccccCccCHHHHHHHHHHHHccccCCCCcEEEec--CCcceecccccccccccccCCCcceEEEECCCCCCCCC
Confidence 136789999999999 999999877421 111 112357642211 112357999999999
Q ss_pred CcCcccccChhHHHHHHHHHHHHHHHHHHHh
Q 008861 136 CMNSSYNVSLSTLRVMTEQFQWGNRICEEIE 166 (550)
Q Consensus 136 ~mNSt~NVS~STl~vI~eEF~Ra~~Il~~i~ 166 (550)
..|++++|+..+++.|++||++|+++|+...
T Consensus 411 ~~Nvgr~v~~~~~~~I~~eF~~A~~~L~~~~ 441 (468)
T 2b4v_A 411 GLNLVRHLHPAKFQLVKQEFLRAAQCMERFL 441 (468)
T ss_dssp CCBTTTTCCHHHHHHHHHHHHHHHHHHHHCC
T ss_pred CcccCCCCCHHHHHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999999999999998743
No 8
>3hj4_A Minor editosome-associated tutase; nucleotidyltransferase, RNA UTP-binding, transferase; 1.56A {Trypanosoma brucei} PDB: 3hiy_A 3hj1_A*
Probab=99.42 E-value=1.3e-12 Score=136.83 Aligned_cols=163 Identities=13% Similarity=0.217 Sum_probs=122.4
Q ss_pred ccchhhhHHHHHHhCCC-hHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHHHHhhC---CCC------------
Q 008861 14 SLNGCRVADQILKHVPN-VEHFRMTLRCLKFWAKRRGVYSNVTGFLGGVNWALLVARVCQLY---PNA------------ 77 (550)
Q Consensus 14 SLNG~RVtd~ILrlVPn-~e~FR~aLR~IKlWAKrRGIYSNv~GyLGGVsWAILVArVCQLy---PNa------------ 77 (550)
..+|++.+..|....-- ...||.+.++||+|||+|||+++..|.||+++|++||+..+|.. |+.
T Consensus 134 n~~gi~ns~ll~~y~~~~p~rlr~LvllvK~Wak~rgLn~~~~GgLsSYaL~lMVI~fLQ~~~vLP~Lq~~~~~~~~~~~ 213 (384)
T 3hj4_A 134 NIGGVENSKILCAIRQVFPDFYGAYIHLVKAWGKAREVIAPERSTFNSFTVTTMALMVLQELGLLPVFSKPTGEFGELTV 213 (384)
T ss_dssp CHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHTTSBCGGGTSBCHHHHHHHHHHHHHHHTSSCCCCCCCSTTSCCCH
T ss_pred ccchHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHcCCCCccCCCccHHHHHHHHHHHHhcCCCCCccccccccCCcccc
Confidence 34689999888777665 45799999999999999999999999999999999999999963 221
Q ss_pred ------------------------ChHHH----HHHHHHhhccCCCCCceec-cccccc-c-C-----------C---Cc
Q 008861 78 ------------------------IPSML----VSRFFRVYTQWRWPNPVML-CPIEED-E-L-----------G---FS 112 (550)
Q Consensus 78 ------------------------s~s~L----l~~FF~vYS~WdWp~PV~L-~~i~~~-~-l-----------g---~~ 112 (550)
+...| +..||+||+.|||.+-|+- .++... . + | .+
T Consensus 214 ~~~~~~~~~~~l~~~~~~~s~N~~sLgeL~~~lL~~Ff~yY~~Fdf~~~vISi~~p~~~~~~~~~~~~~~~~~~~~~~~~ 293 (384)
T 3hj4_A 214 ADAEMLLQEFKLPPIYDSLHDDDEKLGEAVFFCLQRFAEYYAKYDFSAGTVSLIHPRRHRTVYERVVRRHLELLGSRKRL 293 (384)
T ss_dssp HHHHHHHTTCCCCGGGGGCSSCHHHHHHHHHHHHHHHHHHHHHCCTTTBCBCSSSTTCBHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccHhhhhhhcCCCCcCcCCCCcccHHHHHHHHHHHHHHHheecCCCCCEEEecCCcccccccchhhhhhhhhccchhhh
Confidence 12345 8899999999999986554 322211 0 0 0 12
Q ss_pred ccC-----CC-C----------------CCCCCCccceeecCCCCCcCcccccChhHHHHHHHHHHHHHHHHHHHhhccc
Q 008861 113 VWD-----PR-K----------------NPRDRSHHMPIITPAYPCMNSSYNVSLSTLRVMTEQFQWGNRICEEIELNKA 170 (550)
Q Consensus 113 vWd-----P~-~----------------~~rdr~hlMPIITPayP~mNSt~NVS~STl~vI~eEF~Ra~~Il~~i~~~~~ 170 (550)
.|. |. . -.+..+.++.|-. +--..|+++.|+.+....|++||+||++|+.+-+ +..
T Consensus 294 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 371 (384)
T 3hj4_A 294 EWEKHIAEHKEDGPLDENDFSASMQNETTQRPSNSPYVVED-FVNYVNCGRRVQASRVRHIQQEFNRLREMLIDKE-SEL 371 (384)
T ss_dssp HHHHHHHHSGGGCSCCHHHHHHHHHHHHHTSCSSSSCCBBC-TTTCCBTTTTSCGGGHHHHHHHHHHHHHHHTTTG-GGC
T ss_pred hhhhhhhccccCCCCCCCccccccCccccccccccceeeee-eccccccceecCccchhHHHHHHHHHHHHHhccc-ccc
Confidence 343 10 0 1133567888988 8899999999999999999999999999997633 244
Q ss_pred chhhhcCC
Q 008861 171 QWSALFEP 178 (550)
Q Consensus 171 ~W~~LFep 178 (550)
..+++|..
T Consensus 372 ~~~~~~~~ 379 (384)
T 3hj4_A 372 KFDEVFRE 379 (384)
T ss_dssp CHHHHTCC
T ss_pred cHHHHhhh
Confidence 67777654
No 9
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=99.20 E-value=6.8e-11 Score=126.46 Aligned_cols=133 Identities=14% Similarity=0.235 Sum_probs=98.8
Q ss_pred ccchhhhHHHHHHhCCChHHHHHHHHHHHHHHHHhccccccccc-cchHHHHHHHHHHHhhC-----CC-----------
Q 008861 14 SLNGCRVADQILKHVPNVEHFRMTLRCLKFWAKRRGVYSNVTGF-LGGVNWALLVARVCQLY-----PN----------- 76 (550)
Q Consensus 14 SLNG~RVtd~ILrlVPn~e~FR~aLR~IKlWAKrRGIYSNv~Gy-LGGVsWAILVArVCQLy-----PN----------- 76 (550)
-.+|++.+..|....--...||.+..+||.|||+|||.....|. ||+++|++||...+|.. |+
T Consensus 278 n~~gi~ns~ll~~y~~~dprlr~Lvl~vK~Wak~r~Ln~~~~Gg~LsSYsL~lMVI~fLQ~~~ppvLP~Lq~l~~~~~~~ 357 (464)
T 3pq1_A 278 NRIALTSSELLYIYGALDSRVRALVFSVRCWARAHSLTSSIPGAWITNFSLTMMVIFFLQRRSPPILPTLDSLKTLADAE 357 (464)
T ss_dssp CTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTSSCC--CCSCCHHHHHHHHHHHHHSCC-------CCSHHHHTTC
T ss_pred CCcHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHhCCCccccCCCcCcHHHHHHHHHHHHccCCCcCCChHHhccccCcc
Confidence 35699999988887766689999999999999999999999995 99999999999999974 21
Q ss_pred -------------------------CChHHHHHHHHHhhccCCCCCceeccccccccCCCcccCCCCCCCCCCccceeec
Q 008861 77 -------------------------AIPSMLVSRFFRVYTQWRWPNPVMLCPIEEDELGFSVWDPRKNPRDRSHHMPIIT 131 (550)
Q Consensus 77 -------------------------as~s~Ll~~FF~vYS~WdWp~PV~L~~i~~~~lg~~vWdP~~~~rdr~hlMPIIT 131 (550)
.+...|+..||+||++|||.+-|+- |
T Consensus 358 ~~~~vdg~~~~F~~dl~~l~~~~N~~slgeLL~gFF~yYa~FDf~~~vIs---------------------------I-- 408 (464)
T 3pq1_A 358 DKCVIEGNNCTFVRDLSRIKPSQNTETLELLLKEFFEYFGNFAXXXXXXX---------------------------X-- 408 (464)
T ss_dssp ---------------------CCCCCCHHHHHHHHHHHGGGCCCCCCCCC---------------------------C--
T ss_pred cceeeccccccccccHhhcCCCCCcCCHHHHHHHHHHHHHhCCCcccccc---------------------------c--
Confidence 1347899999999999999886652 1
Q ss_pred CCCCCcCcccccChhHHHHHHHHHHHHHHHHHHHhh------cccchh--hhcCCc
Q 008861 132 PAYPCMNSSYNVSLSTLRVMTEQFQWGNRICEEIEL------NKAQWS--ALFEPY 179 (550)
Q Consensus 132 PayP~mNSt~NVS~STl~vI~eEF~Ra~~Il~~i~~------~~~~W~--~LFep~ 179 (550)
..|.+.||+.+.+..++.|+++|.-||+.-.. ...+|. .|+.|.
T Consensus 409 ----~~Nvs~nV~~~~~~r~~~~~r~a~~il~~~~~~~~~~~~~~~wgl~~ll~~~ 460 (464)
T 3pq1_A 409 ----XXXXXXXVSQSQLQKFVDLARESAWILQQEDTDRPSISSNRPWGLVSLLLPS 460 (464)
T ss_dssp ----C-------CHHHHHHHHHHHHHHHHHHHCC-----------CCTTGGGCC--
T ss_pred ----ccccccccCHHHHHHHHHHHHHHHHHHhhccccCcCCCCCCCcchHHHhccC
Confidence 79999999999999999999999999984222 234575 555553
No 10
>1r89_A TRNA nucleotidyltransferase; CCA adding enzyme, incoming nucleotide, nucleotidyltransfera superfamily; HET: CTP; 1.80A {Archaeoglobus fulgidus} SCOP: a.160.1.3 d.218.1.7 d.58.16.2 PDB: 1r8a_A 1r8b_A* 1r8c_A* 1sz1_A* 1tfw_A* 1tfy_A* 1uet_A 1ueu_A* 1uev_A* 2dr5_A 2dr7_A 2dr8_A* 2dr9_A 2dra_A* 2drb_A 2dvi_A* 2zh1_A 2zh2_A 2zh3_A 2zh4_A ...
Probab=95.90 E-value=0.034 Score=59.44 Aligned_cols=173 Identities=18% Similarity=0.147 Sum_probs=109.0
Q ss_pred hHHHHHHhCCChHHHHHHHHHHHHHHHHhccccc--cccccchHHHHHHHHHHHhhCCCCChHHHHHHHHHhhccCCCCC
Q 008861 20 VADQILKHVPNVEHFRMTLRCLKFWAKRRGVYSN--VTGFLGGVNWALLVARVCQLYPNAIPSMLVSRFFRVYTQWRWPN 97 (550)
Q Consensus 20 Vtd~ILrlVPn~e~FR~aLR~IKlWAKrRGIYSN--v~GyLGGVsWAILVArVCQLyPNas~s~Ll~~FF~vYS~WdWp~ 97 (550)
-++++.+...+ +....|.+|.|.|.-|+|++ +.+-+.|+..=+|+++. .+-..+|.. .+ +|..
T Consensus 133 H~~fv~~r~~~---~~~~VRLLK~f~k~~~~ygse~k~~gfSsYllELLv~~y------G~f~~vl~~----~~--~w~~ 197 (437)
T 1r89_A 133 HHKWLEGRIKG---KENEVRLLKGFLKANGIYGAEYKVRGFSGYLCELLIVFY------GSFLETVKN----AR--RWTR 197 (437)
T ss_dssp HHHHHTTTSTT---CHHHHHHHHHHHHHTTCBCCSTTTCCBCHHHHHHHHHHH------SSHHHHHHH----HT--TCCT
T ss_pred HHHHHHhhhhh---hhhHHHHHHHHHHhCCcCCCcccCCCCCHHHHHHHHHHH------cCHHHHHHH----HH--HhCC
Confidence 45556554444 88999999999999999998 45669999999999992 122333333 33 4544
Q ss_pred ceeccccccccCCCcccCCCCCCCCCCccceeecCCCCCcCcccccChhHHHHHHHHHHHHHHHHHHHhhcccchhhhcC
Q 008861 98 PVMLCPIEEDELGFSVWDPRKNPRDRSHHMPIITPAYPCMNSSYNVSLSTLRVMTEQFQWGNRICEEIELNKAQWSALFE 177 (550)
Q Consensus 98 PV~L~~i~~~~lg~~vWdP~~~~rdr~hlMPIITPayP~mNSt~NVS~STl~vI~eEF~Ra~~Il~~i~~~~~~W~~LFe 177 (550)
++.++. +. + ......++.||.|+-|..|.|.++|.-.+..+..+-+... .. +=.++|.
T Consensus 198 ~~~Id~-~~---~---------~~~~~~PlvViDPvDp~rNVAa~~s~~~~~~~~~~a~~~l---~~------ps~~~f~ 255 (437)
T 1r89_A 198 RTVIDV-AK---G---------EVRKGEEFFVVDPVDEKRNVAANLSLDNLARFVHLCREFM---EA------PSLGFFK 255 (437)
T ss_dssp TEEEEG-GG---T---------EEEECSSCEEEETTEEEEETTTTCCHHHHHHHHHHHHHHH---HS------CCGGGGS
T ss_pred CeEEec-CC---C---------cccCCCCEEEECCCCCCCchhhcCCHHHHHHHHHHHHHHH---hC------ccHHhcC
Confidence 666532 10 0 1112357899999999999999999999988877654322 21 1223443
Q ss_pred Ccc--------hh---h-ccccEEEEEEEeCChhhhhhhhhhhhhhHHHHHHHHhhcCCCceeec
Q 008861 178 PYL--------FF---E-AYKNYLQVDIVAADADDLLTWKGWVESRFRQLTLKIERDTNGLLQCH 230 (550)
Q Consensus 178 p~~--------FF---~-~Yk~YL~I~v~a~s~ed~~~W~GwVESRlR~Lv~~LE~~~~~~l~ah 230 (550)
|.+ +- . +=.+.+.|...+++.-+=.-| |-++--.+.|...||+....++...
T Consensus 256 ~~~~~~~~~~~~~~~~~~r~t~~~~~~f~~p~~~~D~l~-pQl~k~~~~i~~~L~~~gF~v~~~~ 319 (437)
T 1r89_A 256 PKHPLEIEPERLRKIVEERGTAVFAVKFRKPDIVDDNLY-PQLERASRKIFEFLERENFMPLRSA 319 (437)
T ss_dssp CCCCCCCCHHHHHHHHHHHTCEEEEEEEECCSCCHHHHH-HHHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCccccCHHHHHHHHHhCCcEEEEEEECCCCCCcccch-HHHHHHHHHHHHHHHHCCCEEEEec
Confidence 321 11 1 122466666655553333334 6777777777788888766655443
No 11
>1px5_A 2'-5'-oligoadenylate synthetase 1; 5-stranded antiparalel beta sheet, four helix bundle, transferase; HET: YCM; 1.74A {Sus scrofa} SCOP: a.160.1.2 d.218.1.6
Probab=91.23 E-value=1.5 Score=44.48 Aligned_cols=108 Identities=10% Similarity=0.146 Sum_probs=73.2
Q ss_pred hHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHHHHhhCCCC---ChHHHHHHHHHhhccCCCCCceeccccccc
Q 008861 31 VEHFRMTLRCLKFWAKRRGVYSNVTGFLGGVNWALLVARVCQLYPNA---IPSMLVSRFFRVYTQWRWPNPVMLCPIEED 107 (550)
Q Consensus 31 ~e~FR~aLR~IKlWAKrRGIYSNv~GyLGGVsWAILVArVCQLyPNa---s~s~Ll~~FF~vYS~WdWp~PV~L~~i~~~ 107 (550)
...|+.+.|.+|.|-++.+. ....+.+.|+.+-+|++++....+.. +.+.-+.+||...++|. +..|.
T Consensus 201 ~~~~k~lIRLlK~W~~~~~~-~~~~~~~ssy~lELL~~~a~e~~~~~~~~~~~~~f~~vle~l~~~~-~~~i~------- 271 (349)
T 1px5_A 201 PTKLKSLIRLVKHWYQTCKK-THGNKLPPQYALELLTVYAWEQGSRKTDFSTAQGFQTVLELVLKHQ-KLCIF------- 271 (349)
T ss_dssp CHHHHHHHHHHHHHHHHHHT-TCSSCCCCHHHHHHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHTGG-GCEEC-------
T ss_pred cHHHHHHHHHHHHHHHHhhh-cccCCCCChHHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCC-cccee-------
Confidence 46899999999999988774 22356789999999999988766554 34566788888888874 11222
Q ss_pred cCCCcccCCCCCCCC-----------CCccceeecCCCCCcCcccccChhHHHHHHHH
Q 008861 108 ELGFSVWDPRKNPRD-----------RSHHMPIITPAYPCMNSSYNVSLSTLRVMTEQ 154 (550)
Q Consensus 108 ~lg~~vWdP~~~~rd-----------r~hlMPIITPayP~mNSt~NVS~STl~vI~eE 154 (550)
|....+..+ +...--|+.|+-|.-|.+.. +.-....+..|
T Consensus 272 ------w~~~y~~~~~~~~~fl~~~l~~~~p~I~DP~dp~~NVa~~-~~~~~~~~~~~ 322 (349)
T 1px5_A 272 ------WEAYYDFTNPVVGRCMLQQLKKPRPVILDPADPTGNVGGG-DTHSWQRLAQE 322 (349)
T ss_dssp ------CCSSCCSSSHHHHHHHHHHHTSSSCEEBCTTCTTCBTTCS-CHHHHHHHHHH
T ss_pred ------eeccccccchhHHhhhhhhhcCCCCeeeCCCCCCCcccCC-chhhHHHHHHH
Confidence 221111111 01123599999999998876 66667666633
No 12
>2kng_A Protein LSR2; DNA-binding domain, immune response, DNA binding protein; NMR {Mycobacterium tuberculosis}
Probab=21.83 E-value=42 Score=26.44 Aligned_cols=17 Identities=24% Similarity=0.526 Sum_probs=13.4
Q ss_pred HHHHHHHHHHhcccccc
Q 008861 38 LRCLKFWAKRRGVYSNV 54 (550)
Q Consensus 38 LR~IKlWAKrRGIYSNv 54 (550)
.++|+.||+..|+-=+-
T Consensus 15 ~~aIR~WAr~nG~~Vsd 31 (55)
T 2kng_A 15 SAAIREWARRNGHNVST 31 (55)
T ss_dssp HHHHHHHHHHTTCCCCS
T ss_pred hHHHHHHHHHcCCcCCC
Confidence 67999999999875333
Done!