Query 008862
Match_columns 550
No_of_seqs 280 out of 663
Neff 5.4
Searched_HMMs 46136
Date Thu Mar 28 17:31:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008862.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008862hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4698 Uncharacterized conser 100.0 6.4E-83 1.4E-87 674.8 19.9 446 58-540 17-472 (475)
2 PF04577 DUF563: Protein of un 100.0 3.9E-27 8.5E-32 225.7 19.2 198 228-476 1-204 (206)
3 COG4421 Capsular polysaccharid 99.7 6.2E-16 1.3E-20 158.4 18.1 201 219-478 123-329 (368)
4 cd05212 NAD_bind_m-THF_DH_Cycl 80.3 9.1 0.0002 35.9 8.2 72 369-448 27-99 (140)
5 PF02882 THF_DHG_CYH_C: Tetrah 80.1 7.1 0.00015 37.5 7.6 71 370-448 36-107 (160)
6 PRK14178 bifunctional 5,10-met 77.7 6.7 0.00015 41.0 7.1 72 370-449 152-224 (279)
7 cd00316 Oxidoreductase_nitroge 69.9 17 0.00038 38.6 8.2 99 368-470 150-251 (399)
8 PRK14188 bifunctional 5,10-met 68.3 19 0.00041 38.0 7.8 71 370-448 158-229 (296)
9 cd01971 Nitrogenase_VnfN_like 65.9 11 0.00024 41.2 5.8 100 369-471 154-261 (427)
10 PRK14194 bifunctional 5,10-met 63.1 28 0.0006 36.9 7.8 71 370-448 159-230 (301)
11 PRK14179 bifunctional 5,10-met 62.8 26 0.00057 36.8 7.5 71 370-448 158-229 (284)
12 cd02696 MurNAc-LAA N-acetylmur 59.7 25 0.00055 32.9 6.3 47 389-435 33-82 (172)
13 cd01080 NAD_bind_m-THF_DH_Cycl 58.6 21 0.00045 34.4 5.5 74 369-451 43-119 (168)
14 PF01520 Amidase_3: N-acetylmu 56.9 18 0.00038 34.0 4.7 46 390-435 33-81 (175)
15 cd01967 Nitrogenase_MoFe_alpha 56.1 56 0.0012 35.1 9.0 97 369-470 159-258 (406)
16 PRK14190 bifunctional 5,10-met 54.6 38 0.00083 35.5 7.1 71 370-448 158-229 (284)
17 PRK14175 bifunctional 5,10-met 54.3 35 0.00076 35.9 6.8 72 370-449 158-230 (286)
18 PF00148 Oxidored_nitro: Nitro 54.3 25 0.00055 37.6 6.0 98 368-469 142-243 (398)
19 PF05222 AlaDh_PNT_N: Alanine 54.0 42 0.00091 31.1 6.6 94 381-478 10-117 (136)
20 TIGR02883 spore_cwlD N-acetylm 53.3 37 0.0008 32.9 6.4 47 389-435 34-97 (189)
21 cd01980 Chlide_reductase_Y Chl 52.8 36 0.00078 37.2 6.9 95 370-471 159-254 (416)
22 TIGR02853 spore_dpaA dipicolin 52.3 62 0.0013 33.7 8.2 79 390-473 166-259 (287)
23 PRK14170 bifunctional 5,10-met 51.4 47 0.001 35.0 7.1 71 370-448 157-228 (284)
24 PRK14191 bifunctional 5,10-met 50.8 44 0.00096 35.1 6.8 69 370-448 157-228 (285)
25 cd01981 Pchlide_reductase_B Pc 50.8 68 0.0015 35.0 8.6 101 369-472 161-266 (430)
26 cd01972 Nitrogenase_VnfE_like 50.5 35 0.00077 37.3 6.4 98 370-470 161-265 (426)
27 PRK10319 N-acetylmuramoyl-l-al 50.2 31 0.00068 36.2 5.7 57 390-451 91-150 (287)
28 PRK14189 bifunctional 5,10-met 49.8 48 0.001 34.8 7.0 72 369-448 157-229 (285)
29 PLN02897 tetrahydrofolate dehy 49.1 50 0.0011 35.7 7.0 71 370-448 214-285 (345)
30 PRK08306 dipicolinate synthase 47.8 67 0.0014 33.5 7.7 94 371-475 153-262 (296)
31 PRK02910 light-independent pro 47.4 53 0.0011 37.1 7.3 100 369-471 157-261 (519)
32 PRK14169 bifunctional 5,10-met 47.2 61 0.0013 34.1 7.2 70 371-448 157-227 (282)
33 PRK14177 bifunctional 5,10-met 47.1 62 0.0013 34.0 7.2 71 370-448 159-230 (284)
34 PRK14172 bifunctional 5,10-met 46.8 61 0.0013 34.0 7.1 71 370-448 158-229 (278)
35 COG3959 Transketolase, N-termi 46.1 33 0.00071 35.1 4.8 49 371-422 172-226 (243)
36 PRK14182 bifunctional 5,10-met 45.6 68 0.0015 33.7 7.2 71 370-448 157-228 (282)
37 PRK14171 bifunctional 5,10-met 45.4 66 0.0014 33.9 7.1 70 371-448 160-230 (288)
38 PRK08306 dipicolinate synthase 44.7 87 0.0019 32.7 8.0 82 388-476 15-121 (296)
39 PLN02616 tetrahydrofolate dehy 43.6 66 0.0014 35.0 7.0 71 370-448 231-302 (364)
40 PF13271 DUF4062: Domain of un 43.4 58 0.0013 27.3 5.3 44 389-432 17-63 (83)
41 COG0190 FolD 5,10-methylene-te 43.4 57 0.0012 34.4 6.2 70 369-448 155-227 (283)
42 PRK14183 bifunctional 5,10-met 43.2 76 0.0016 33.3 7.2 71 370-448 157-228 (281)
43 PRK10792 bifunctional 5,10-met 43.1 75 0.0016 33.4 7.1 72 370-449 159-231 (285)
44 PRK14186 bifunctional 5,10-met 43.0 74 0.0016 33.7 7.1 70 371-448 159-229 (297)
45 PRK14173 bifunctional 5,10-met 42.4 76 0.0017 33.4 7.1 71 370-448 155-226 (287)
46 PRK14166 bifunctional 5,10-met 42.2 77 0.0017 33.3 7.1 71 370-448 157-228 (282)
47 PRK14180 bifunctional 5,10-met 40.2 86 0.0019 33.0 7.0 71 370-448 158-229 (282)
48 cd01079 NAD_bind_m-THF_DH NAD 40.1 61 0.0013 32.4 5.6 75 370-448 62-155 (197)
49 PRK14181 bifunctional 5,10-met 39.6 90 0.002 32.9 7.1 71 370-448 153-228 (287)
50 PRK14174 bifunctional 5,10-met 38.4 94 0.002 32.8 7.0 69 370-448 159-234 (295)
51 PLN02516 methylenetetrahydrofo 38.3 97 0.0021 32.9 7.1 71 370-448 167-238 (299)
52 CHL00076 chlB photochlorophyll 37.7 1.3E+02 0.0027 34.2 8.3 101 368-471 161-266 (513)
53 PF00389 2-Hacid_dh: D-isomer 36.8 73 0.0016 28.6 5.3 77 388-472 9-86 (133)
54 PRK14187 bifunctional 5,10-met 36.4 1E+02 0.0023 32.5 7.0 71 370-448 160-231 (294)
55 PF11595 DUF3245: Protein of u 36.2 17 0.00037 34.7 1.0 14 30-43 125-138 (149)
56 TIGR02667 moaB_proteo molybden 35.8 1E+02 0.0023 29.3 6.4 72 370-441 4-83 (163)
57 PRK14168 bifunctional 5,10-met 35.7 1.1E+02 0.0023 32.5 6.9 71 370-448 161-236 (297)
58 PRK14176 bifunctional 5,10-met 34.8 1.2E+02 0.0025 32.1 7.0 71 370-448 164-235 (287)
59 PRK14167 bifunctional 5,10-met 34.7 1E+02 0.0023 32.6 6.7 71 370-448 157-232 (297)
60 PRK14193 bifunctional 5,10-met 34.6 1.2E+02 0.0025 32.0 7.0 71 370-448 158-231 (284)
61 cd01965 Nitrogenase_MoFe_beta_ 34.1 71 0.0015 34.9 5.6 100 369-471 154-274 (428)
62 PRK12548 shikimate 5-dehydroge 33.7 1.8E+02 0.004 30.1 8.3 93 372-472 152-255 (289)
63 cd01976 Nitrogenase_MoFe_alpha 32.9 70 0.0015 35.1 5.3 97 370-471 172-271 (421)
64 PRK14184 bifunctional 5,10-met 32.6 1.2E+02 0.0026 32.0 6.7 70 371-448 158-232 (286)
65 PRK14185 bifunctional 5,10-met 32.1 1.3E+02 0.0029 31.7 6.9 70 371-448 158-232 (293)
66 PRK02261 methylaspartate mutas 31.6 1.8E+02 0.0038 27.1 7.0 54 369-424 2-55 (137)
67 cd03129 GAT1_Peptidase_E_like 30.8 1.6E+02 0.0035 28.7 7.0 64 369-432 28-91 (210)
68 cd01968 Nitrogenase_NifE_I Nit 30.1 90 0.002 33.9 5.5 97 370-471 158-257 (410)
69 PRK13337 putative lipid kinase 28.8 4.1E+02 0.0089 27.4 9.9 69 385-453 19-93 (304)
70 PLN02928 oxidoreductase family 28.4 6.8E+02 0.015 26.8 11.7 136 389-546 173-340 (347)
71 COG2185 Sbm Methylmalonyl-CoA 27.6 2.5E+02 0.0054 26.8 7.2 60 368-432 10-73 (143)
72 PF03193 DUF258: Protein of un 27.5 96 0.0021 29.9 4.6 53 388-440 2-58 (161)
73 COG1703 ArgK Putative periplas 26.9 72 0.0016 34.1 3.9 44 388-432 133-177 (323)
74 KOG4698 Uncharacterized conser 26.9 13 0.00029 41.4 -1.5 100 382-484 192-293 (475)
75 PRK10964 ADP-heptose:LPS hepto 25.0 2.8E+02 0.0062 28.6 8.0 80 370-451 178-281 (322)
76 TIGR00177 molyb_syn molybdenum 24.9 1.1E+02 0.0025 28.2 4.5 53 383-435 25-80 (144)
77 PF14812 PBP1_TM: Transmembran 24.8 11 0.00024 32.4 -2.0 7 60-66 61-67 (81)
78 TIGR00640 acid_CoA_mut_C methy 24.3 2.4E+02 0.0052 26.0 6.4 68 370-439 2-70 (132)
79 PRK00258 aroE shikimate 5-dehy 24.3 2.5E+02 0.0054 28.8 7.3 52 417-472 181-240 (278)
80 PRK14192 bifunctional 5,10-met 23.8 1.8E+02 0.004 30.4 6.2 68 372-449 161-231 (283)
81 cd02410 archeal_CPSF_KH The ar 23.2 1.4E+02 0.0031 28.5 4.7 78 370-452 8-88 (145)
82 COG1920 Predicted nucleotidylt 23.1 54 0.0012 32.9 2.0 84 385-476 72-163 (210)
83 cd01078 NAD_bind_H4MPT_DH NADP 23.1 2.7E+02 0.0059 26.5 6.9 70 372-448 54-128 (194)
84 PRK10431 N-acetylmuramoyl-l-al 23.1 1.5E+02 0.0032 33.2 5.6 68 368-435 188-275 (445)
85 TIGR01284 alt_nitrog_alph nitr 23.0 1.1E+02 0.0023 34.1 4.6 97 370-471 199-298 (457)
86 PF12689 Acid_PPase: Acid Phos 22.9 1.7E+02 0.0037 28.3 5.4 90 374-474 35-126 (169)
87 TIGR01862 N2-ase-Ialpha nitrog 22.9 1.9E+02 0.004 32.0 6.4 97 370-471 191-290 (443)
88 cd03146 GAT1_Peptidase_E Type 22.7 1.8E+02 0.0038 28.7 5.6 62 368-432 29-91 (212)
89 PRK13059 putative lipid kinase 22.7 5.8E+02 0.013 26.3 9.7 67 386-452 20-91 (295)
90 TIGR01501 MthylAspMutase methy 22.4 2.4E+02 0.0052 26.4 6.1 41 388-430 19-60 (134)
91 smart00852 MoCF_biosynth Proba 22.3 1.4E+02 0.003 27.0 4.5 51 385-435 18-71 (135)
92 TIGR01283 nifE nitrogenase mol 21.8 1.9E+02 0.0042 32.0 6.2 96 370-470 197-295 (456)
93 TIGR00147 lipid kinase, YegS/R 21.7 7.5E+02 0.016 25.1 10.2 81 372-452 3-92 (293)
94 PRK02842 light-independent pro 21.6 1.9E+02 0.0041 31.7 6.1 94 370-471 166-262 (427)
95 cd01977 Nitrogenase_VFe_alpha 21.3 2.2E+02 0.0047 31.1 6.4 97 370-471 162-261 (415)
96 TIGR00507 aroE shikimate 5-deh 21.1 3.9E+02 0.0084 27.2 7.9 51 419-473 176-234 (270)
97 COG1597 LCB5 Sphingosine kinas 20.9 7.8E+02 0.017 25.8 10.2 91 373-471 6-104 (301)
98 cd01974 Nitrogenase_MoFe_beta 20.8 1.3E+02 0.0028 33.1 4.6 100 369-471 159-278 (435)
99 TIGR02015 BchY chlorophyllide 20.6 1.3E+02 0.0029 33.1 4.6 81 386-471 178-260 (422)
100 PF03575 Peptidase_S51: Peptid 20.5 1.9E+02 0.0041 26.8 5.1 42 388-430 3-44 (154)
101 COG0860 AmiC N-acetylmuramoyl- 20.1 2.3E+02 0.005 28.7 5.9 47 389-435 76-125 (231)
102 PRK13055 putative lipid kinase 20.0 6.7E+02 0.015 26.4 9.7 68 386-453 21-95 (334)
No 1
>KOG4698 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=6.4e-83 Score=674.83 Aligned_cols=446 Identities=46% Similarity=0.729 Sum_probs=392.6
Q ss_pred cCCCCccccchhHHHHHHHHHHHHHhhcCCcchhhc---cccccCcccccccc-cccCCCCcccCCCCceeecCCCCCcc
Q 008862 58 KRSSSTTSRTKLLSLLLLSLLSCTFILTPHALSLFS---FADSFGAEDEGLVA-ADVNAPLCSSISNGTICCDRSGIRTD 133 (550)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~Cd~s~~r~d 133 (550)
|+...+.-.||.-+-=+++++.+|++..|..+.+-. .++....+.+.... ...+.++|+..+++.++||+++.++|
T Consensus 17 ~~~~~~~~~~~~f~~~~~~vl~~~~v~kp~~l~~~~~~~~~~tg~~~~~~~~~~~~~~q~~~~~~e~~~~~C~~~g~~s~ 96 (475)
T KOG4698|consen 17 KKNLLGLLIYGVFHSSLLSVLPKCVVVKPYLLLLPRFQPDLPTGSFEDELLPLSQLLRQPPGSALEDSSFFCDRSGTRSD 96 (475)
T ss_pred hhcCccceecCcchhhhhhhcccceecCCeecccCccccCcccceeeccCCChhhcccCCCCcccCCceEEeeccccccc
Confidence 333334444444444467899999999888766322 22323345554444 44557999999999999999999999
Q ss_pred eeEEeCcEEeeCCCceEEEEecCCCcccccccchhhcccceeeecCCCCCCcccccCccceeEEEeccCCCcCCCCCcee
Q 008862 134 VCIMKGDVRTNSASSSIFLYKNTNGFINYVSSMVEEKELQHEKIRPYTRKWETSVMDTIDELDLVVKKENETANHHCDVV 213 (550)
Q Consensus 134 ~C~~~GdvR~~~~~~tv~l~~~~~~~~~~~~~~~~~~~~~~~~irPY~RK~~~~~m~~v~Evtv~~~~~~~~~~p~C~v~ 213 (550)
+|+|+||+|+|+.++|+++....-- ++-.+.+|+||||+||||..+|..|+|+++...+.+ ...+|+++
T Consensus 97 ~c~~kg~~r~h~~~~~~~~~~~~~~---------~~s~~~~e~ikpy~rk~~~~vmp~vre~~l~~~~~~--~~r~c~v~ 165 (475)
T KOG4698|consen 97 FCEMKGDVRTHPDSSTVLLTLGRLL---------TFSGRLVEKIKPYTRKGETWVMPEVRELNLLVRPGS--EIRRCDVN 165 (475)
T ss_pred hhhhcCccccCcchhhhhhhccchh---------hhccccchhcccccccccccccccccccceEEcCCc--ccceeeee
Confidence 9999999999999999987765311 011357999999999999999999999999988743 45789999
Q ss_pred eecceEEEEcCCccccccchhhhhhhhHHhhHh--hcCCeeEEEEecccchhhccHHHHHHhcCCCCCcccCCCCcceee
Q 008862 214 HDVPAVFFSTGGYTGNVYHEFNDGILPLYITSQ--HLKKKVVFVILEYHNWWIMKYGDILSRLSDYPPIDFSGDKRTHCF 291 (550)
Q Consensus 214 h~~Pavvfs~ggytgN~fH~f~D~liPLfiT~~--~f~~~Vq~vi~d~~~ww~~kY~~ll~~LS~y~vIdl~~d~~v~CF 291 (550)
|++||+||++|||+||.||+|+|+++|||+|.+ .|+++||+|+++.++||+.||.+++++||+||+++++++..+|||
T Consensus 166 ~~~pa~vfs~Gg~tgn~yhdf~d~~ipL~it~~~~~~n~ev~~li~~~~~ww~~kf~Dvv~~lSn~~~v~~~~~~~ThcF 245 (475)
T KOG4698|consen 166 HEVPAIVFSTGGYTGNEYHDFNDGIIPLFITEAELRFNKEVQFLITETHSWWDMKFGDVVRQLSNYPVVDFDAELRTHCF 245 (475)
T ss_pred cccchheeecCCcchhhHHHHHhhhhhhhcccchhcccccEEEEEEEcchhhhhhHHHHHHhcCCCceEEecCCceEEEe
Confidence 999999999999999999999999999999999 789999999999999999999999999999999999999999999
Q ss_pred CeeEEccccccccccCCCCCCCC--ccHHHHHHHHHHhhccccccccchHHHHHHHhccCCCCCCCCCCccccccCCCCC
Q 008862 292 PEAIVGLRIHDELTVDPSLMRGN--KNAIDFRNVLDQAYWPRIRGLIQDEEREAREKLSLSPSSDPSFKNVKEVQGDQSK 369 (550)
Q Consensus 292 ~~aiVGL~~h~~L~idp~~~p~~--~si~dFr~FLr~ay~~r~~~L~~~~~r~~~~~l~i~p~g~~~~~~~~~~~~~~~~ 369 (550)
.+++|||..|.++++||...+++ ++|.+|++||..+|++|+... +++ ..+..+
T Consensus 246 ~~~~vgL~~h~~y~v~~t~~~~~~~~s~~~fr~~l~~a~~~~i~~~------------~~t-------------~~~~~k 300 (475)
T KOG4698|consen 246 KEAIVGLVSHFPYAVNPTQPPPNGTLSMLDFRNLLDKALSPRIPEA------------NVT-------------APEPWK 300 (475)
T ss_pred eeeeeeeeecccccccCCcCCCccccccccHHHHHHHHhccccccc------------ccC-------------CcChhh
Confidence 99999999999999999998866 899999999999999775311 100 122456
Q ss_pred CCEEEEEEcCCCccccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHhcCCeEEeechhhhhhhhccCCCcEEEEEe
Q 008862 370 KPKLVILSRNGSRAITNENSLVKMAEDIGFQVQVVRPDRTSELAKIYRALNSSDVMVGVHGAAMTHFLFMKPGSVFIQVI 449 (550)
Q Consensus 370 rprlviIsR~~sR~IlNe~evv~~l~~~Gf~V~v~e~~~~~s~~eQi~l~~~aDVlVGvHGAGLTN~lFmppga~VIEI~ 449 (550)
+||+++++|.++|.|+|++||.+++++.||+|.+++++. .++++|+++.+++|||||||||||||++|+||++++|||.
T Consensus 301 kpri~~lsR~~~r~Ilne~el~~~~~~~gf~v~~~~~~~-t~v~~~~~i~~s~~vmiGvHGa~lth~lfl~~~~~~iqi~ 379 (475)
T KOG4698|consen 301 KPRITILSRAGSRAILNEDELPRMLEDIGFEVSVLRPDR-TEVAKQLRITNSSDVMIGVHGAGLTHLLFLPPWAGVIQIY 379 (475)
T ss_pred CCceEEEecccchhhhcchhhhHHHHhCCCceEEecccc-cchhhhhheeeccceeeeccCccceeEEecCCcceEEEEE
Confidence 899999999999999999999999999999999999854 9999999999999999999999999999999999999999
Q ss_pred cCC-CCcccccchHHHHhhcCCceEEEEecCCCCcccccCCCCCCccCCCCcccccCcceee-eeecCCccEEEehHHHH
Q 008862 450 PLG-TDWAAETYYGEPARKLGLKYIGYTILPRESSLYDQYDKNDPVLRDPSSVNEKGWQYTK-TIYLDGQNVRLNLRRFQ 527 (550)
Q Consensus 450 P~g-~~~~~~~~Y~~~A~~~Gl~Y~~y~i~~eEssL~~~y~~dh~v~~dP~~i~~kgW~~~~-~~yL~~QnV~lDi~rF~ 527 (550)
|+| ..|.+..+|..+|+.|+++|.+|+|.++|++|.++|++||+++.||.+..++||+.++ .+||..|+|++|+.||+
T Consensus 380 pcg~~~w~a~~a~~~p~k~~~l~y~~ykI~~~es~l~~~y~~d~~~v~dp~s~~~~~f~~~k~~~yl~~q~v~ld~nRf~ 459 (475)
T KOG4698|consen 380 PCGDPGWAAKLARLRPAKYMTLEYAEYKIRAEESELYHKYGGDNTIVFDPISFQKKGFEETKKKVYLELQAVRLDINRFR 459 (475)
T ss_pred ECCCccchhhhhhccccceeccccceeEEeecccceeeeccCCCceecccceeccccceeeeeeeeEeEeeeehhhhhcc
Confidence 999 8999999999999999999999999999999999999999999999999999999987 89999999999999999
Q ss_pred HHHHHHHHHHHhh
Q 008862 528 KRLVRAYDYSINR 540 (550)
Q Consensus 528 ~~L~~A~~~l~~~ 540 (550)
+.+.+|+...+.+
T Consensus 460 ~~~~~a~~~~~~~ 472 (475)
T KOG4698|consen 460 KTLVKAYLKEITQ 472 (475)
T ss_pred cchhHHHHHHHHh
Confidence 9999999887765
No 2
>PF04577 DUF563: Protein of unknown function (DUF563); InterPro: IPR007657 This is a family of uncharacterised glycosyltransferases belonging to glycosyltransferase family 61. Sequences are further processed into a mature form.; GO: 0016757 transferase activity, transferring glycosyl groups
Probab=99.95 E-value=3.9e-27 Score=225.66 Aligned_cols=198 Identities=25% Similarity=0.399 Sum_probs=140.4
Q ss_pred ccccchhhhhhhhHHhhHhhc--CCeeEEEEecccchhhccH-HHHHHhcCC-CCCcccCCCCcceeeCeeEEccccccc
Q 008862 228 GNVYHEFNDGILPLYITSQHL--KKKVVFVILEYHNWWIMKY-GDILSRLSD-YPPIDFSGDKRTHCFPEAIVGLRIHDE 303 (550)
Q Consensus 228 gN~fH~f~D~liPLfiT~~~f--~~~Vq~vi~d~~~ww~~kY-~~ll~~LS~-y~vIdl~~d~~v~CF~~aiVGL~~h~~ 303 (550)
.|++|.+.| ++|.+.+++++ ..+..+++.+.. ...+| .++|+.|.- ...+.+ ..++..||++++++......
T Consensus 1 ~~~gH~l~d-~l~~l~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~l~~lg~~~~~i~~-~~~~~~~~~~l~~~~~~~~~ 76 (206)
T PF04577_consen 1 NNFGHFLID-FLPRLWYLPQYIPDSDIIILVPDDF--DNPPFIREILELLGIPENRIKI-DSDEPVCFERLIVPSPPYSP 76 (206)
T ss_pred CCCcEEHHH-HHHHHHHHHHHCCCCCeEEEEcCCc--cccHHHHHHHHHcCCCccEEEE-cCCCeEEECEEEEeCCCccc
Confidence 478899999 57766888876 344445544311 12244 367776653 222312 23578999999997644311
Q ss_pred cccCCCCCCCCccHHHHHHHHHHhhccccccccchHHHHHHHhccCCCCCCCCCCccccccCCCCCCCEEEEEEc--CCC
Q 008862 304 LTVDPSLMRGNKNAIDFRNVLDQAYWPRIRGLIQDEEREAREKLSLSPSSDPSFKNVKEVQGDQSKKPKLVILSR--NGS 381 (550)
Q Consensus 304 L~idp~~~p~~~si~dFr~FLr~ay~~r~~~L~~~~~r~~~~~l~i~p~g~~~~~~~~~~~~~~~~rprlviIsR--~~s 381 (550)
.... ......|++++++.+. .+...+||++|++| ++.
T Consensus 77 ~~~~------~~~~~~~~~~~~~~~~-----------------------------------~~~~~~p~i~~i~R~~~~~ 115 (206)
T PF04577_consen 77 SDFN------PSFFPALRDRIRRKLN-----------------------------------LPPPKRPRILYISRRKSGS 115 (206)
T ss_pred cCcC------chHHHHHHHHHHHHhC-----------------------------------CcccCCCeEEEEecCCCCC
Confidence 1001 1112255555554441 01125679999999 557
Q ss_pred ccccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHhcCCeEEeechhhhhhhhccCCCcEEEEEecCCCCcccccch
Q 008862 382 RAITNENSLVKMAEDIGFQVQVVRPDRTSELAKIYRALNSSDVMVGVHGAAMTHFLFMKPGSVFIQVIPLGTDWAAETYY 461 (550)
Q Consensus 382 R~IlNe~evv~~l~~~Gf~V~v~e~~~~~s~~eQi~l~~~aDVlVGvHGAGLTN~lFmppga~VIEI~P~g~~~~~~~~Y 461 (550)
|+|.||+||++.+++.||+++ ++ +.+++.||++++++|||+||+|||||+|++||+||+.||||+|... ...+|
T Consensus 116 R~i~Ne~el~~~l~~~~~~~v--~~-~~~s~~eqv~~~~~a~viig~hGs~l~n~~F~~~~s~viei~~~~~---~~~~~ 189 (206)
T PF04577_consen 116 RRILNEDELLEILKKYGFEVV--DP-EDLSFEEQVKLFASAKVIIGPHGSALTNLLFMPPGSTVIEIFPPNY---YNRHY 189 (206)
T ss_pred CcCcCHHHHHHHHhhCCeEEE--eC-CCCCHHHHHHHhcCCCEEEecCchHhheeeecCCCCEEEEEeCCCC---CCHHH
Confidence 999999999999999998765 44 4899999999999999999999999999999999999999987752 34459
Q ss_pred HHHHhhcCCceEEEE
Q 008862 462 GEPARKLGLKYIGYT 476 (550)
Q Consensus 462 ~~~A~~~Gl~Y~~y~ 476 (550)
..+|+.+|++|..+.
T Consensus 190 ~~~a~~~~~~y~~v~ 204 (206)
T PF04577_consen 190 RNLAQALGIHYYAVY 204 (206)
T ss_pred HHHHHHcCCeEEEEe
Confidence 999999999997653
No 3
>COG4421 Capsular polysaccharide biosynthesis protein [Carbohydrate transport and metabolism]
Probab=99.70 E-value=6.2e-16 Score=158.45 Aligned_cols=201 Identities=19% Similarity=0.260 Sum_probs=130.3
Q ss_pred EEEEcCCccccccchhhhhhhhHHhhHhhcC--CeeEEEEecccchhhccHHHHHHhc-CCCCCcccCCCCcceeeCeeE
Q 008862 219 VFFSTGGYTGNVYHEFNDGILPLYITSQHLK--KKVVFVILEYHNWWIMKYGDILSRL-SDYPPIDFSGDKRTHCFPEAI 295 (550)
Q Consensus 219 vvfs~ggytgN~fH~f~D~liPLfiT~~~f~--~~Vq~vi~d~~~ww~~kY~~ll~~L-S~y~vIdl~~d~~v~CF~~ai 295 (550)
.||...|+..|+-|.+.| ++|-.+.++..+ .+--++.....+| -.+++..+ ++-++|.. ...+|-..++
T Consensus 123 ~v~~~~~~~~~Yghflle-~Lp~l~~i~~l~i~~~~pLl~P~~~~w----qadll~m~~~~~~ii~~---~p~V~~~~av 194 (368)
T COG4421 123 AVFKEWGFSFEYGHFLLE-NLPYLWQIKSLGILSDPPLLYPRLTEW----QADLLFMAGPDCPIIAT---APAVPLGPAV 194 (368)
T ss_pred ceecccccccccchhHHh-hhHHHHHHhhhcccccCcccCCcchHH----HHhHHhhcCCCCceeec---ccceeecccc
Confidence 556666789999999999 677655556543 1222332222222 23566654 46666654 4455644444
Q ss_pred EccccccccccCCCCCCCCccHHHHHHHHHHhhccccccccchHHHHHHHhccCCCCCCCCCCccccccCCCCCCCEEEE
Q 008862 296 VGLRIHDELTVDPSLMRGNKNAIDFRNVLDQAYWPRIRGLIQDEEREAREKLSLSPSSDPSFKNVKEVQGDQSKKPKLVI 375 (550)
Q Consensus 296 VGL~~h~~L~idp~~~p~~~si~dFr~FLr~ay~~r~~~L~~~~~r~~~~~l~i~p~g~~~~~~~~~~~~~~~~rprlvi 375 (550)
+.... ++ .-++.++...- +|... ..++...++.+|
T Consensus 195 l~~~~------s~---------~~~ha~l~~~~-----------eR~~~-------------------~~~~~~~adkiY 229 (368)
T COG4421 195 LPVSG------SP---------RYTHALLAWKD-----------ERVIA-------------------IKGKGKVADKIY 229 (368)
T ss_pred cCCCC------Cc---------hhhhHHHHHHh-----------hhhhc-------------------ccCCCCCcceEE
Confidence 32111 11 12234443211 11211 022355677899
Q ss_pred EEcCCC--ccccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHhcCCeEEeechhhhhhhhccCCCcEEEEEecCCC
Q 008862 376 LSRNGS--RAITNENSLVKMAEDIGFQVQVVRPDRTSELAKIYRALNSSDVMVGVHGAAMTHFLFMKPGSVFIQVIPLGT 453 (550)
Q Consensus 376 IsR~~s--R~IlNe~evv~~l~~~Gf~V~v~e~~~~~s~~eQi~l~~~aDVlVGvHGAGLTN~lFmppga~VIEI~P~g~ 453 (550)
|||+.. |+++||+||...+++.||.++.. |+++..||++||+.|.|+||.||+||.|++|+++|+.||||.|-..
T Consensus 230 VSR~~qS~R~lvnE~evE~~~q~~G~~IVrP---Etl~~~eQ~~LFr~AkvIvG~~GS~laNavF~~~~~kvvEI~~~~~ 306 (368)
T COG4421 230 VSRKAQSMRVLVNEEEVERLLQRSGLTIVRP---ETLGPREQARLFRKAKVIVGPHGSGLANAVFAAPGCKVVEIQPGTT 306 (368)
T ss_pred EechhhHHHHhhCHHHHHHHHHhcCcEEEec---hhcCHHHHHHHhhcceEEeccccchhhhheecCCCceEEEeccCCC
Confidence 999653 99999999999999999998865 4799999999999999999999999999999999999999999332
Q ss_pred Ccccccch-HHHHhhcCCceEEEEec
Q 008862 454 DWAAETYY-GEPARKLGLKYIGYTIL 478 (550)
Q Consensus 454 ~~~~~~~Y-~~~A~~~Gl~Y~~y~i~ 478 (550)
. .+..+ ++.+..-|.-|. +.+.
T Consensus 307 ~--~~s~~vr~~~~~~g~~~~-~~ve 329 (368)
T COG4421 307 N--FRSFWVRMANYMSGDYYP-GYVE 329 (368)
T ss_pred c--chHHHHHHhhhcccceee-cccc
Confidence 1 33444 444444455444 4443
No 4
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=80.29 E-value=9.1 Score=35.89 Aligned_cols=72 Identities=21% Similarity=0.264 Sum_probs=52.7
Q ss_pred CCCEEEEEEcCCCccccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHhcCCeEEeechhh-hhhhhccCCCcEEEE
Q 008862 369 KKPKLVILSRNGSRAITNENSLVKMAEDIGFQVQVVRPDRTSELAKIYRALNSSDVMVGVHGAA-MTHFLFMKPGSVFIQ 447 (550)
Q Consensus 369 ~rprlviIsR~~sR~IlNe~evv~~l~~~Gf~V~v~e~~~~~s~~eQi~l~~~aDVlVGvHGAG-LTN~lFmppga~VIE 447 (550)
..-+++++.|+.. .-..+..+|.+.|..|.+.+. .+.++++ .+++|||+|..-|.. +-..=|++||++||-
T Consensus 27 ~gk~v~VvGrs~~----vG~pla~lL~~~gatV~~~~~-~t~~l~~---~v~~ADIVvsAtg~~~~i~~~~ikpGa~Vid 98 (140)
T cd05212 27 DGKKVLVVGRSGI----VGAPLQCLLQRDGATVYSCDW-KTIQLQS---KVHDADVVVVGSPKPEKVPTEWIKPGATVIN 98 (140)
T ss_pred CCCEEEEECCCch----HHHHHHHHHHHCCCEEEEeCC-CCcCHHH---HHhhCCEEEEecCCCCccCHHHcCCCCEEEE
Confidence 3457888977654 334677888888999998863 2335544 589999999988865 445568999999994
Q ss_pred E
Q 008862 448 V 448 (550)
Q Consensus 448 I 448 (550)
+
T Consensus 99 v 99 (140)
T cd05212 99 C 99 (140)
T ss_pred c
Confidence 4
No 5
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=80.14 E-value=7.1 Score=37.48 Aligned_cols=71 Identities=24% Similarity=0.434 Sum_probs=47.0
Q ss_pred CCEEEEEEcCCCccccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHhcCCeEEeech-hhhhhhhccCCCcEEEEE
Q 008862 370 KPKLVILSRNGSRAITNENSLVKMAEDIGFQVQVVRPDRTSELAKIYRALNSSDVMVGVHG-AAMTHFLFMKPGSVFIQV 448 (550)
Q Consensus 370 rprlviIsR~~sR~IlNe~evv~~l~~~Gf~V~v~e~~~~~s~~eQi~l~~~aDVlVGvHG-AGLTN~lFmppga~VIEI 448 (550)
.-++++|.|+.. +. .-+..+|.+.|..|.+... .+.++.+ .+++|||+|..-| +++-..=|.+||++||-+
T Consensus 36 Gk~v~VvGrs~~---VG-~Pla~lL~~~~atVt~~h~-~T~~l~~---~~~~ADIVVsa~G~~~~i~~~~ik~gavVIDv 107 (160)
T PF02882_consen 36 GKKVVVVGRSNI---VG-KPLAMLLLNKGATVTICHS-KTKNLQE---ITRRADIVVSAVGKPNLIKADWIKPGAVVIDV 107 (160)
T ss_dssp T-EEEEE-TTTT---TH-HHHHHHHHHTT-EEEEE-T-TSSSHHH---HHTTSSEEEE-SSSTT-B-GGGS-TTEEEEE-
T ss_pred CCEEEEECCcCC---CC-hHHHHHHHhCCCeEEeccC-CCCcccc---eeeeccEEeeeeccccccccccccCCcEEEec
Confidence 346899988863 11 2477888888999998864 3445655 4689999998887 678888899999999977
No 6
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=77.73 E-value=6.7 Score=40.98 Aligned_cols=72 Identities=19% Similarity=0.324 Sum_probs=54.0
Q ss_pred CCEEEEEEcCCCccccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHhcCCeEEeech-hhhhhhhccCCCcEEEEE
Q 008862 370 KPKLVILSRNGSRAITNENSLVKMAEDIGFQVQVVRPDRTSELAKIYRALNSSDVMVGVHG-AAMTHFLFMKPGSVFIQV 448 (550)
Q Consensus 370 rprlviIsR~~sR~IlNe~evv~~l~~~Gf~V~v~e~~~~~s~~eQi~l~~~aDVlVGvHG-AGLTN~lFmppga~VIEI 448 (550)
.-++++|.|+..+ -.-+..++...|..|.+... .+. ...+.+++|||+|+.=| +++...=|++||++||.+
T Consensus 152 Gk~V~ViGrs~~v----Grpla~lL~~~~atVtv~hs-~t~---~L~~~~~~ADIvI~Avgk~~lv~~~~vk~GavVIDV 223 (279)
T PRK14178 152 GKRAVVVGRSIDV----GRPMAALLLNADATVTICHS-KTE---NLKAELRQADILVSAAGKAGFITPDMVKPGATVIDV 223 (279)
T ss_pred CCEEEEECCCccc----cHHHHHHHHhCCCeeEEEec-Chh---HHHHHHhhCCEEEECCCcccccCHHHcCCCcEEEEe
Confidence 4578999887641 12467777788999988763 222 33456789999999999 888777788999999998
Q ss_pred e
Q 008862 449 I 449 (550)
Q Consensus 449 ~ 449 (550)
-
T Consensus 224 g 224 (279)
T PRK14178 224 G 224 (279)
T ss_pred e
Confidence 4
No 7
>cd00316 Oxidoreductase_nitrogenase The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. This group contains both alpha and beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase) and, both subunits of Protochlorophyllide (Pchlide) reductase and chlorophyllide (chlide) reductase. The nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized nitrogenase is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers whose alpha and beta subunits are similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molec
Probab=69.94 E-value=17 Score=38.60 Aligned_cols=99 Identities=15% Similarity=0.312 Sum_probs=70.4
Q ss_pred CCCCEEEEEEcCCCccccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHhcCCeEEee---chhhhhhhhccCCCcE
Q 008862 368 SKKPKLVILSRNGSRAITNENSLVKMAEDIGFQVQVVRPDRTSELAKIYRALNSSDVMVGV---HGAAMTHFLFMKPGSV 444 (550)
Q Consensus 368 ~~rprlviIsR~~sR~IlNe~evv~~l~~~Gf~V~v~e~~~~~s~~eQi~l~~~aDVlVGv---HGAGLTN~lFmppga~ 444 (550)
..++.+-+|.-... ..-|..|+.+.+++.|.+|+.+-+ ...+++| ++-+.+|.+-|.+ +|..++..|=-+-|.-
T Consensus 150 ~~~~~vNlig~~~~-~~~d~~el~~ll~~~G~~v~~~~~-~~~s~~~-i~~~~~A~~nlv~~~~~g~~~a~~l~~~~g~p 226 (399)
T cd00316 150 TEPGSVNLIGGYNL-GGGDLRELKRLLEEMGIRVNALFD-GGTTVEE-LRELGNAKLNLVLCRESGLYLARYLEEKYGIP 226 (399)
T ss_pred CCCCcEEEECCCCC-chhhHHHHHHHHHHcCCcEEEEcC-CCCCHHH-HHhhccCcEEEEecHhHHHHHHHHHHHHhCCC
Confidence 34566777754421 115889999999999999988743 3467755 5667777777777 5666777665556776
Q ss_pred EEEEecCCCCcccccchHHHHhhcCC
Q 008862 445 FIQVIPLGTDWAAETYYGEPARKLGL 470 (550)
Q Consensus 445 VIEI~P~g~~~~~~~~Y~~~A~~~Gl 470 (550)
.+...|+|++- ...|++.+|+.+|+
T Consensus 227 ~~~~~p~G~~~-t~~~l~~i~~~~g~ 251 (399)
T cd00316 227 YILINPIGLEA-TDAFLRKLAELFGI 251 (399)
T ss_pred eEEeCCcCHHH-HHHHHHHHHHHhCC
Confidence 77777999642 46789999999995
No 8
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=68.33 E-value=19 Score=37.97 Aligned_cols=71 Identities=21% Similarity=0.364 Sum_probs=52.0
Q ss_pred CCEEEEEEcCCCccccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHhcCCeEEeech-hhhhhhhccCCCcEEEEE
Q 008862 370 KPKLVILSRNGSRAITNENSLVKMAEDIGFQVQVVRPDRTSELAKIYRALNSSDVMVGVHG-AAMTHFLFMKPGSVFIQV 448 (550)
Q Consensus 370 rprlviIsR~~sR~IlNe~evv~~l~~~Gf~V~v~e~~~~~s~~eQi~l~~~aDVlVGvHG-AGLTN~lFmppga~VIEI 448 (550)
.-++++|.|.+. --.-++..|.+.|+.|.+... .+.+++ ++.+.|||+|.+=| +.+....|++||++||.+
T Consensus 158 Gk~V~viGrs~~----mG~PmA~~L~~~g~tVtv~~~-rT~~l~---e~~~~ADIVIsavg~~~~v~~~~lk~GavVIDv 229 (296)
T PRK14188 158 GLNAVVIGRSNL----VGKPMAQLLLAANATVTIAHS-RTRDLP---AVCRRADILVAAVGRPEMVKGDWIKPGATVIDV 229 (296)
T ss_pred CCEEEEEcCCcc----hHHHHHHHHHhCCCEEEEECC-CCCCHH---HHHhcCCEEEEecCChhhcchheecCCCEEEEc
Confidence 346889988874 112467777788999999842 233453 45689999887766 567788899999999987
No 9
>cd01971 Nitrogenase_VnfN_like Nitrogenase_vnfN_like: VnfN subunit of the VnfEN complex-like. This group in addition to VnfN contains a subset of the beta subunit of the nitrogenase MoFe protein and NifN-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protien for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=65.88 E-value=11 Score=41.21 Aligned_cols=100 Identities=16% Similarity=0.253 Sum_probs=69.0
Q ss_pred CCCEEEEEEcCC---CccccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHhcCCeEEeec---hhhhhhhhccCCC
Q 008862 369 KKPKLVILSRNG---SRAITNENSLVKMAEDIGFQVQVVRPDRTSELAKIYRALNSSDVMVGVH---GAAMTHFLFMKPG 442 (550)
Q Consensus 369 ~rprlviIsR~~---sR~IlNe~evv~~l~~~Gf~V~v~e~~~~~s~~eQi~l~~~aDVlVGvH---GAGLTN~lFmppg 442 (550)
.+++|-||.... .----|.+|+.+.|++.|.++..+-+ ...++ ++++-+.+|.+-|.++ |..++..|.-+=|
T Consensus 154 ~~~~VNiiG~~~~~~~~~~~d~~elk~lL~~~Gl~v~~~~~-~~~~~-~ei~~~~~A~~niv~~~~~g~~~a~~L~~~~g 231 (427)
T cd01971 154 EPGLVNLWGPVPYQDPFWRGDLEEIKRVLEGIGLKVNILFG-PESNG-EELRSIPKAQFNLVLSPWVGLEFAQHLEEKYG 231 (427)
T ss_pred CCCeEEEEeccCCccccccccHHHHHHHHHHCCCeEEEEEC-CCCCH-HHHHhcccCcEEEEEcHhhHHHHHHHHHHHhC
Confidence 355676775432 11225789999999999999987643 34566 6678888888555554 4456666666667
Q ss_pred cEEEEE--ecCCCCcccccchHHHHhhcCCc
Q 008862 443 SVFIQV--IPLGTDWAAETYYGEPARKLGLK 471 (550)
Q Consensus 443 a~VIEI--~P~g~~~~~~~~Y~~~A~~~Gl~ 471 (550)
.-.+.. +|+|++ ....|++.+++.+|+.
T Consensus 232 iP~i~~~~~P~G~~-~t~~~l~~i~~~~g~~ 261 (427)
T cd01971 232 QPYIHSPTLPIGAK-ATAEFLRQVAKFAGIE 261 (427)
T ss_pred CceEecCCCccCHH-HHHHHHHHHHHHhCCC
Confidence 767776 789954 2456889999998865
No 10
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=63.06 E-value=28 Score=36.89 Aligned_cols=71 Identities=21% Similarity=0.384 Sum_probs=52.1
Q ss_pred CCEEEEEEcCCCccccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHhcCCeEEeech-hhhhhhhccCCCcEEEEE
Q 008862 370 KPKLVILSRNGSRAITNENSLVKMAEDIGFQVQVVRPDRTSELAKIYRALNSSDVMVGVHG-AAMTHFLFMKPGSVFIQV 448 (550)
Q Consensus 370 rprlviIsR~~sR~IlNe~evv~~l~~~Gf~V~v~e~~~~~s~~eQi~l~~~aDVlVGvHG-AGLTN~lFmppga~VIEI 448 (550)
.-++++|.|.+. +- .-+...|.+.|+.|.+..- .+.+++ ++.++|||+|.+=| +++....|++||++||.+
T Consensus 159 Gk~V~vIG~s~i---vG-~PmA~~L~~~gatVtv~~~-~t~~l~---e~~~~ADIVIsavg~~~~v~~~~ik~GaiVIDv 230 (301)
T PRK14194 159 GKHAVVIGRSNI---VG-KPMAALLLQAHCSVTVVHS-RSTDAK---ALCRQADIVVAAVGRPRLIDADWLKPGAVVIDV 230 (301)
T ss_pred CCEEEEECCCCc---cH-HHHHHHHHHCCCEEEEECC-CCCCHH---HHHhcCCEEEEecCChhcccHhhccCCcEEEEe
Confidence 457899988753 11 1366777788999999853 233443 45789999887766 567778899999999998
No 11
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=62.77 E-value=26 Score=36.76 Aligned_cols=71 Identities=23% Similarity=0.352 Sum_probs=51.9
Q ss_pred CCEEEEEEcCCCccccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHhcCCeEEeech-hhhhhhhccCCCcEEEEE
Q 008862 370 KPKLVILSRNGSRAITNENSLVKMAEDIGFQVQVVRPDRTSELAKIYRALNSSDVMVGVHG-AAMTHFLFMKPGSVFIQV 448 (550)
Q Consensus 370 rprlviIsR~~sR~IlNe~evv~~l~~~Gf~V~v~e~~~~~s~~eQi~l~~~aDVlVGvHG-AGLTN~lFmppga~VIEI 448 (550)
.-++++|.|++. +- .-+...|.+.|..|.+... .+-++ .+.+++|||+|.+=| +++....|++||++||.+
T Consensus 158 Gk~v~vIG~S~i---vG-~Pla~lL~~~gatVtv~~s-~t~~l---~~~~~~ADIVI~avg~~~~v~~~~ik~GavVIDv 229 (284)
T PRK14179 158 GKHAVVIGRSNI---VG-KPMAQLLLDKNATVTLTHS-RTRNL---AEVARKADILVVAIGRGHFVTKEFVKEGAVVIDV 229 (284)
T ss_pred CCEEEEECCCCc---Cc-HHHHHHHHHCCCEEEEECC-CCCCH---HHHHhhCCEEEEecCccccCCHHHccCCcEEEEe
Confidence 457899998763 11 1366777788999998742 23334 346889999988776 567778899999999998
No 12
>cd02696 MurNAc-LAA N-acetylmuramoyl-L-alanine amidase or MurNAc-LAA (also known as peptidoglycan aminohydrolase, NAMLA amidase, NAMLAA, Amidase 3, and peptidoglycan amidase; EC 3.5.1.28) is an autolysin that hydrolyzes the amide bond between N-acetylmuramoyl and L-amino acids in certain cell wall glycopeptides. These proteins are Zn-dependent peptidases with highly conserved residues involved in cation co-ordination. MurNAc-LAA in this family is one of several peptidoglycan hydrolases (PGHs) found in bacterial and bacteriophage or prophage genomes that are involved in the degradation of the peptidoglycan. In Escherichia coli, there are five MurNAc-LAAs present: AmiA, AmiB, AmiC and AmiD that are periplasmic, and AmpD that is cytoplasmic. Three of these (AmiA, AmiB and AmiC) belong to this family, the other two (AmiD and AmpD) do not. E. coli AmiA, AmiB and AmiC play an important role in cleaving the septum to release daughter cells after cell division. In general, bacterial MurNAc-LAAs
Probab=59.71 E-value=25 Score=32.94 Aligned_cols=47 Identities=26% Similarity=0.393 Sum_probs=37.3
Q ss_pred HHHHHHHHcCCEEEEEecC-CCCCHHHHHHHHhc--CCeEEeechhhhhh
Q 008862 389 SLVKMAEDIGFQVQVVRPD-RTSELAKIYRALNS--SDVMVGVHGAAMTH 435 (550)
Q Consensus 389 evv~~l~~~Gf~V~v~e~~-~~~s~~eQi~l~~~--aDVlVGvHGAGLTN 435 (550)
.|.+.|++.|++|.....+ ...++.+.+...+. +|++|..|-.+-.+
T Consensus 33 ~l~~~L~~~G~~v~~~r~~~~~~~l~~r~~~an~~~~d~~islH~na~~~ 82 (172)
T cd02696 33 KLAKLLEAAGAKVVLTRDDDTFVSLSERVAIANRAGADLFISIHANAAPN 82 (172)
T ss_pred HHHHHHHHCCCEEEEEecCCCCCCHHHHHHHHHhcCCCEEEEEeecCCCC
Confidence 4556666779999887653 33689999999986 99999999877766
No 13
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=58.64 E-value=21 Score=34.43 Aligned_cols=74 Identities=20% Similarity=0.272 Sum_probs=52.1
Q ss_pred CCCEEEEEEcCCC-ccccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHhcCCeEEeechhh-hhhhhccCCCcEEE
Q 008862 369 KKPKLVILSRNGS-RAITNENSLVKMAEDIGFQVQVVRPDRTSELAKIYRALNSSDVMVGVHGAA-MTHFLFMKPGSVFI 446 (550)
Q Consensus 369 ~rprlviIsR~~s-R~IlNe~evv~~l~~~Gf~V~v~e~~~~~s~~eQi~l~~~aDVlVGvHGAG-LTN~lFmppga~VI 446 (550)
..-++++|..... .. .+++.|.+.|.+|.+.. .+..+..+.+++|||+|+.-|+. +-..=.++++.++|
T Consensus 43 ~gk~vlViG~G~~~G~-----~~a~~L~~~g~~V~v~~----r~~~~l~~~l~~aDiVIsat~~~~ii~~~~~~~~~viI 113 (168)
T cd01080 43 AGKKVVVVGRSNIVGK-----PLAALLLNRNATVTVCH----SKTKNLKEHTKQADIVIVAVGKPGLVKGDMVKPGAVVI 113 (168)
T ss_pred CCCEEEEECCcHHHHH-----HHHHHHhhCCCEEEEEE----CCchhHHHHHhhCCEEEEcCCCCceecHHHccCCeEEE
Confidence 4567888877631 11 36778888899887775 23466778999999999999994 22222357788888
Q ss_pred EEe-cC
Q 008862 447 QVI-PL 451 (550)
Q Consensus 447 EI~-P~ 451 (550)
.+- |.
T Consensus 114 Dla~pr 119 (168)
T cd01080 114 DVGINR 119 (168)
T ss_pred EccCCC
Confidence 883 44
No 14
>PF01520 Amidase_3: N-acetylmuramoyl-L-alanine amidase; InterPro: IPR002508 The cell wall envelope of Gram-positive bacteria is a macromolecular, exoskeletal organelle that is assembled and turned over at designated sites. The cell wall also functions as a surface organelle that allows Gram-positive pathogens to interact with their environment, in particular the tissues of the infected host. All of these functions require that surface proteins and enzymes be properly targeted to the cell wall envelope. Two basic mechanisms, cell wall sorting and targeting, have been identified. Cell well sorting is the covalent attachment of surface proteins to the peptidoglycan via a C-terminal sorting signal that contains a consensus LPXTG sequence. More than 100 proteins that possess cell wall-sorting signals, including the M proteins of Streptococcus pyogenes, protein A of Staphylococcus aureus, and several internalins of Listeria monocytogenes, have been identified. Cell wall targeting involves the noncovalent attachment of proteins to the cell surface via specialised binding domains. Several of these wall-binding domains appear to interact with secondary wall polymers that are associated with the peptidoglycan, for example teichoic acids and polysaccharides. Proteins that are targeted to the cell surface include muralytic enzymes such as autolysins, lysostaphin, and phage lytic enzymes. Other examples for targeted proteins are the surface S-layer proteins of bacilli and clostridia, as well as virulence factors required for the pathogenesis of L. monocytogenes (internalin B) and Streptococcus pneumoniae (PspA) infections []. Autolysin 3.5.1.28 from EC hydrolyses the link between N-acetylmuramoyl residues and L-amino acid residues in certain bacterial cell wall glycopeptides.; GO: 0008745 N-acetylmuramoyl-L-alanine amidase activity, 0009253 peptidoglycan catabolic process; PDB: 3QAY_A 3CZX_A 1JWQ_A 1XOV_A 3NE8_A.
Probab=56.86 E-value=18 Score=33.95 Aligned_cols=46 Identities=22% Similarity=0.238 Sum_probs=35.0
Q ss_pred HHHHHHHcCCEEEEEecC-CCCCHHHHHHHH--hcCCeEEeechhhhhh
Q 008862 390 LVKMAEDIGFQVQVVRPD-RTSELAKIYRAL--NSSDVMVGVHGAAMTH 435 (550)
Q Consensus 390 vv~~l~~~Gf~V~v~e~~-~~~s~~eQi~l~--~~aDVlVGvHGAGLTN 435 (550)
|.+.|++.|++|...... ...++.+.++.. ..+|++|++|--+..+
T Consensus 33 l~~~L~~~g~~V~~tr~~d~~~~l~~R~~~an~~~ad~~isiH~na~~~ 81 (175)
T PF01520_consen 33 LKKELEKHGIKVYLTRDNDSDVSLQERAALANSWGADLFISIHFNASNG 81 (175)
T ss_dssp HHHHHHHTTEEEEESSSSSHCCCHHHHHHHHHHTTSSEEEEEEEE-SSS
T ss_pred HHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhcccCEEEEEeecCccC
Confidence 556667789998887643 346899999999 7899999999766533
No 15
>cd01967 Nitrogenase_MoFe_alpha_like Nitrogenase_MoFe_alpha_like: Nitrogenase MoFe protein, alpha subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. Three genetically distinct types of nitrogenase systems are known to exist: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). This group contains the alpha subunit of component 1 of all three different forms. The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. The role of the delta subunit is unknown. For MoFe, each alphabeta pair of subunits contains one
Probab=56.07 E-value=56 Score=35.13 Aligned_cols=97 Identities=10% Similarity=0.106 Sum_probs=67.0
Q ss_pred CCCEEEEEEcCCCccccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHhcCCeEEeec---hhhhhhhhccCCCcEE
Q 008862 369 KKPKLVILSRNGSRAITNENSLVKMAEDIGFQVQVVRPDRTSELAKIYRALNSSDVMVGVH---GAAMTHFLFMKPGSVF 445 (550)
Q Consensus 369 ~rprlviIsR~~sR~IlNe~evv~~l~~~Gf~V~v~e~~~~~s~~eQi~l~~~aDVlVGvH---GAGLTN~lFmppga~V 445 (550)
.+..|-||.-.. ..-|..|+.+.|++.|.++..+-+ ...+++|. +-+.+|.+-|.+. |-.++..|-=+=|.-.
T Consensus 159 ~~~~VNiig~~~--~~~d~~el~~lL~~~Gi~~~~~~~-~~~~~~~i-~~~~~A~~niv~~~~~~~~~a~~L~~r~GiP~ 234 (406)
T cd01967 159 TPYDVNIIGEYN--IGGDAWVIKPLLEELGIRVNATFT-GDGTVDEL-RRAHRAKLNLVHCSRSMNYLAREMEERYGIPY 234 (406)
T ss_pred CCCeEEEEeccc--cchhHHHHHHHHHHcCCEEEEEeC-CCCCHHHH-hhCccCCEEEEEChHHHHHHHHHHHHhhCCCE
Confidence 355677776432 234889999999999999987644 35777664 5688888766654 4445555544456656
Q ss_pred EEEecCCCCcccccchHHHHhhcCC
Q 008862 446 IQVIPLGTDWAAETYYGEPARKLGL 470 (550)
Q Consensus 446 IEI~P~g~~~~~~~~Y~~~A~~~Gl 470 (550)
+...|+|++ ....+++.+++.+|.
T Consensus 235 ~~~~p~G~~-~t~~~l~~l~~~lg~ 258 (406)
T cd01967 235 MEVNFYGFE-DTSESLRKIAKFFGD 258 (406)
T ss_pred EEecCCcHH-HHHHHHHHHHHHhCC
Confidence 677888864 245789999999997
No 16
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=54.60 E-value=38 Score=35.54 Aligned_cols=71 Identities=18% Similarity=0.300 Sum_probs=51.2
Q ss_pred CCEEEEEEcCCCccccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHhcCCeEEeech-hhhhhhhccCCCcEEEEE
Q 008862 370 KPKLVILSRNGSRAITNENSLVKMAEDIGFQVQVVRPDRTSELAKIYRALNSSDVMVGVHG-AAMTHFLFMKPGSVFIQV 448 (550)
Q Consensus 370 rprlviIsR~~sR~IlNe~evv~~l~~~Gf~V~v~e~~~~~s~~eQi~l~~~aDVlVGvHG-AGLTN~lFmppga~VIEI 448 (550)
.-++++|.|+.. +- .-+..+|.+.|..|.+... .+.++. +.+++|||+|+.-| +++-..=|.+||++||-+
T Consensus 158 Gk~vvViGrS~i---VG-~Pla~lL~~~~atVt~chs-~t~~l~---~~~~~ADIvI~AvG~p~~i~~~~ik~gavVIDv 229 (284)
T PRK14190 158 GKHVVVVGRSNI---VG-KPVGQLLLNENATVTYCHS-KTKNLA---ELTKQADILIVAVGKPKLITADMVKEGAVVIDV 229 (284)
T ss_pred CCEEEEECCCCc---cH-HHHHHHHHHCCCEEEEEeC-CchhHH---HHHHhCCEEEEecCCCCcCCHHHcCCCCEEEEe
Confidence 457899998864 11 1366777778999988753 222333 46899999998766 567777788999999998
No 17
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=54.29 E-value=35 Score=35.85 Aligned_cols=72 Identities=21% Similarity=0.306 Sum_probs=52.1
Q ss_pred CCEEEEEEcCCCccccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHhcCCeEEeechhh-hhhhhccCCCcEEEEE
Q 008862 370 KPKLVILSRNGSRAITNENSLVKMAEDIGFQVQVVRPDRTSELAKIYRALNSSDVMVGVHGAA-MTHFLFMKPGSVFIQV 448 (550)
Q Consensus 370 rprlviIsR~~sR~IlNe~evv~~l~~~Gf~V~v~e~~~~~s~~eQi~l~~~aDVlVGvHGAG-LTN~lFmppga~VIEI 448 (550)
.-++++|.|++. +- .-+..+|.+.|..|.+..- .+ .+..+.+.+|||+|+.=|.. +...=|.++|++||.+
T Consensus 158 Gk~vvVIGrs~~---VG-~pla~lL~~~gatVtv~~s-~t---~~l~~~~~~ADIVIsAvg~p~~i~~~~vk~gavVIDv 229 (286)
T PRK14175 158 GKNAVVIGRSHI---VG-QPVSKLLLQKNASVTILHS-RS---KDMASYLKDADVIVSAVGKPGLVTKDVVKEGAVIIDV 229 (286)
T ss_pred CCEEEEECCCch---hH-HHHHHHHHHCCCeEEEEeC-Cc---hhHHHHHhhCCEEEECCCCCcccCHHHcCCCcEEEEc
Confidence 347899988752 11 1366777888999998863 22 23345789999999988877 5555678999999998
Q ss_pred e
Q 008862 449 I 449 (550)
Q Consensus 449 ~ 449 (550)
=
T Consensus 230 G 230 (286)
T PRK14175 230 G 230 (286)
T ss_pred C
Confidence 3
No 18
>PF00148 Oxidored_nitro: Nitrogenase component 1 type Oxidoreductase; InterPro: IPR000510 Enzymes belonging to this family include cofactor-requiring nitrogenases and protochlorophyllide reductase. The key enzymatic reactions in nitrogen fixation are catalysed by the nitrogenase complex, which has two components, the iron protein (component 2), and a component (component 1) which is either a molybdenum-iron, vanadium-iron or iron-iron protein. The enzyme (1.18.6.1 from EC) forms a hexamer of two alpha, two beta and two delta chains. Protochlorophyllide reductase (1.3.1.33 from EC) is involved in the light-dependent accumulation of chlorophyll, probably at the step of reduction of protochlorophyllide to chlorophyllide.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QH1_C 1QH8_A 1H1L_C 1QGU_A 3AEK_C 3AET_C 3AER_C 3AEU_A 3AES_C 3AEQ_C ....
Probab=54.25 E-value=25 Score=37.55 Aligned_cols=98 Identities=16% Similarity=0.262 Sum_probs=71.3
Q ss_pred CCCCEEEEEEcCCCccccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHhcCCeEEeechhhhh-hhhccCC--CcE
Q 008862 368 SKKPKLVILSRNGSRAITNENSLVKMAEDIGFQVQVVRPDRTSELAKIYRALNSSDVMVGVHGAAMT-HFLFMKP--GSV 444 (550)
Q Consensus 368 ~~rprlviIsR~~sR~IlNe~evv~~l~~~Gf~V~v~e~~~~~s~~eQi~l~~~aDVlVGvHGAGLT-N~lFmpp--ga~ 444 (550)
.+++.+-||....-- .-|.+|+.+.|++.|.+|..+-+ ...+++| ++-+.+|++-|.++..+.. =+=+|.. |.-
T Consensus 142 ~~~~~VNiiG~~~~~-~~d~~el~~lL~~~Gi~v~~~~~-~~~t~~e-~~~~~~A~lniv~~~~~~~~~a~~L~e~~giP 218 (398)
T PF00148_consen 142 KKPRSVNIIGGSPLG-PGDLEELKRLLEELGIEVNAVFP-GGTTLEE-IRKAPEAALNIVLCPEGGPYAAEWLEERFGIP 218 (398)
T ss_dssp TSSSEEEEEEESTBT-HHHHHHHHHHHHHTTEEEEEEEE-TTBCHHH-HHHGGGSSEEEESSCCHHHHHHHHHHHHHT-E
T ss_pred CCCCceEEecCcCCC-cccHHHHHHHHHHCCCceEEEeC-CCCCHHH-HHhCCcCcEEEEeccchhhHHHHHHHHHhCCC
Confidence 344577788665311 27889999999999999887754 3567755 5788899999998888665 4555554 777
Q ss_pred EEE-EecCCCCcccccchHHHHhhcC
Q 008862 445 FIQ-VIPLGTDWAAETYYGEPARKLG 469 (550)
Q Consensus 445 VIE-I~P~g~~~~~~~~Y~~~A~~~G 469 (550)
.+. ..|+|++. ...||+.+|+.+|
T Consensus 219 ~~~~~~p~G~~~-t~~~l~~i~~~lg 243 (398)
T PF00148_consen 219 YLYFPSPYGIEG-TDAWLRAIAEALG 243 (398)
T ss_dssp EEEEC-SBSHHH-HHHHHHHHHHHHT
T ss_pred eeeccccccHHH-HHHHHHHHHHHhC
Confidence 777 67888643 4678999999999
No 19
>PF05222 AlaDh_PNT_N: Alanine dehydrogenase/PNT, N-terminal domain; InterPro: IPR007886 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins, represented in this entry, and to a central glycine-rich region which is part of the NAD(H)-binding site.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1X15_A 2BRU_A 1X14_B 1X13_A 2EEZ_F 2VOE_F 2VHV_B 2VHY_A 2VHX_A 2VHW_A ....
Probab=54.02 E-value=42 Score=31.13 Aligned_cols=94 Identities=16% Similarity=0.258 Sum_probs=55.3
Q ss_pred CccccCHHHHHHHHHHcCCEEEEEecC-CCCCHHHH-------------HHHHhcCCeEEeechhhhhhhhccCCCcEEE
Q 008862 381 SRAITNENSLVKMAEDIGFQVQVVRPD-RTSELAKI-------------YRALNSSDVMVGVHGAAMTHFLFMKPGSVFI 446 (550)
Q Consensus 381 sR~IlNe~evv~~l~~~Gf~V~v~e~~-~~~s~~eQ-------------i~l~~~aDVlVGvHGAGLTN~lFmppga~VI 446 (550)
.||+-=..+.++.|.+.|++|.+-.-. +...|.++ -+++..||||+++..-...-.-.|++|.++|
T Consensus 10 E~RVal~P~~v~~L~~~G~~V~VE~gaG~~a~fsD~~Y~~aGA~I~~~~~ev~~~adiIl~v~~p~~~e~~~l~~g~~li 89 (136)
T PF05222_consen 10 ERRVALTPEDVKKLVKLGHEVLVESGAGEGAGFSDEEYEEAGAEIVSRAEEVYSDADIILKVKPPSEEELALLKPGQTLI 89 (136)
T ss_dssp ---BSS-HHHHHHHHHTTSEEEEETTTTGGGTB-HHHHHHTTEEEESSHHHHHTTSSEEEESS---GGGGGGS-TTCEEE
T ss_pred CcEecccHHHHHHHHhCCCEEEEECCCCCcCcccHHHHhhCCcEEecCchhhcccCCEEEEECCCCHHHHhhcCCCcEEE
Confidence 466666677888888889998864321 12222221 1678899999999999999999999999999
Q ss_pred EEecCCCCcccccchHHHHhhcCCceEEEEec
Q 008862 447 QVIPLGTDWAAETYYGEPARKLGLKYIGYTIL 478 (550)
Q Consensus 447 EI~P~g~~~~~~~~Y~~~A~~~Gl~Y~~y~i~ 478 (550)
=++.+. ........++ ..|+..+.|..-
T Consensus 90 ~~~~~~---~~~~~~~~l~-~~~it~~a~E~i 117 (136)
T PF05222_consen 90 GFLHPA---QNKELLEALA-KKGITAFALELI 117 (136)
T ss_dssp EE--GG---GHHHHHHHHH-HCTEEEEEGGGS
T ss_pred Eeeccc---cCHHHHHHHH-HCCCEEEEhhhC
Confidence 887542 1222233333 467777666443
No 20
>TIGR02883 spore_cwlD N-acetylmuramoyl-L-alanine amidase CwlD. Members of this protein family are the CwlD family of N-acetylmuramoyl-L-alanine amidase. This family has been called the germination-specific N-acetylmuramoyl-L-alanine amidase. CwlD is required, along with the putative deactylase PdaA, to make muramic delta-lactam, a novel peptidoglycan constituent found only in spores. CwlD mutants show a germination defect.
Probab=53.34 E-value=37 Score=32.92 Aligned_cols=47 Identities=23% Similarity=0.385 Sum_probs=34.8
Q ss_pred HHHHHHHHcCCEEEEEecCC-C--------------CCHHHHHHHHh--cCCeEEeechhhhhh
Q 008862 389 SLVKMAEDIGFQVQVVRPDR-T--------------SELAKIYRALN--SSDVMVGVHGAAMTH 435 (550)
Q Consensus 389 evv~~l~~~Gf~V~v~e~~~-~--------------~s~~eQi~l~~--~aDVlVGvHGAGLTN 435 (550)
.|.+.|++.|++|+...... + .++.+.+++.+ .+|++|++|--+..+
T Consensus 34 ~l~~~L~~~G~~V~ltr~~d~~~~~~~~~~~~~~~~~~L~~R~~~An~~~adlfiSiH~Na~~~ 97 (189)
T TIGR02883 34 KLKDYLQEQGALVVMTREDDSDLASEGTKGYSRRKIEDLRKRVKLINESEADLFISIHLNAFPS 97 (189)
T ss_pred HHHHHHHhCCCEEEEEecCCcCccccccccccccccCCHHHHHHHHHhcCCCEEEEEecCCCCC
Confidence 45567777899998766531 2 26888888887 589999999877643
No 21
>cd01980 Chlide_reductase_Y Chlide_reductase_Y : Y subunit of chlorophyllide (chlide) reductase (BchY). Chlide reductase participates in photosynthetic pigment synthesis playing a role in the conversion of chlorophylls(Chl) into bacteriochlorophylls (BChl). Chlide reductase catalyzes the reduction of the B-ring of the tetrapyrolle. Chlide reductase is a three subunit enzyme (subunits are designated BchX, BchY and BchZ). The similarity between these three subunits and the subunits for nitrogenase suggests that BchX serves as an electron donor for the BchY-BchY catalytic subunits.
Probab=52.79 E-value=36 Score=37.19 Aligned_cols=95 Identities=21% Similarity=0.305 Sum_probs=66.2
Q ss_pred CCEEEEEEcCCCccccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHH-hcCCeEEeechhhhhhhhccCCCcEEEEE
Q 008862 370 KPKLVILSRNGSRAITNENSLVKMAEDIGFQVQVVRPDRTSELAKIYRAL-NSSDVMVGVHGAAMTHFLFMKPGSVFIQV 448 (550)
Q Consensus 370 rprlviIsR~~sR~IlNe~evv~~l~~~Gf~V~v~e~~~~~s~~eQi~l~-~~aDVlVGvHGAGLTN~lFmppga~VIEI 448 (550)
++++.+|..- --.+.+|+.+.+++.|.+++++-+ ..+++|..++- +.+.+.++..+...+..|= ..|.-.+..
T Consensus 159 ~~~vniiG~~---~~~d~~ei~~lL~~~Gl~~~~~l~--~~~~~el~~~~~A~~~i~~~~~~~~~a~~Le-~~GvP~~~~ 232 (416)
T cd01980 159 EPSLALLGEM---FPADPVAIGSVLERMGLAAVPVVP--TREWRELYAAGDAAAVAALHPFYTATIRELE-EAGRPIVSG 232 (416)
T ss_pred CCeEEEEccC---CCCCHHHHHHHHHHcCCceeeEeC--CCCHHHHhhcccCcEEEEeChhHHHHHHHHH-HcCCceecC
Confidence 4578888532 133667999999999999986433 45787654444 3445566666666666664 447767777
Q ss_pred ecCCCCcccccchHHHHhhcCCc
Q 008862 449 IPLGTDWAAETYYGEPARKLGLK 471 (550)
Q Consensus 449 ~P~g~~~~~~~~Y~~~A~~~Gl~ 471 (550)
.|.|++ ....|++.+|...|..
T Consensus 233 ~piG~~-~td~~l~~la~~~g~~ 254 (416)
T cd01980 233 APVGAD-GTAAWLEAVGEALGLD 254 (416)
T ss_pred CCcCch-HHHHHHHHHHHHhCcC
Confidence 899976 4568999999999964
No 22
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=52.30 E-value=62 Score=33.72 Aligned_cols=79 Identities=19% Similarity=0.230 Sum_probs=50.0
Q ss_pred HHHHHHHcCCEEEEEecCC------------CCCHHHHHHHHhcCCeEEeechhhhhh---hhccCCCcEEEEEecCCCC
Q 008862 390 LVKMAEDIGFQVQVVRPDR------------TSELAKIYRALNSSDVMVGVHGAAMTH---FLFMKPGSVFIQVIPLGTD 454 (550)
Q Consensus 390 vv~~l~~~Gf~V~v~e~~~------------~~s~~eQi~l~~~aDVlVGvHGAGLTN---~lFmppga~VIEI~P~g~~ 454 (550)
+++.|+..|.+|.+.+... ..++.+.-+++.++|++|-.=..++.+ +-.|++++.+|.+.-..
T Consensus 166 vA~~L~~~G~~V~v~~R~~~~~~~~~~~g~~~~~~~~l~~~l~~aDiVint~P~~ii~~~~l~~~k~~aliIDlas~P-- 243 (287)
T TIGR02853 166 IARTFSALGARVFVGARSSADLARITEMGLIPFPLNKLEEKVAEIDIVINTIPALVLTADVLSKLPKHAVIIDLASKP-- 243 (287)
T ss_pred HHHHHHHCCCEEEEEeCCHHHHHHHHHCCCeeecHHHHHHHhccCCEEEECCChHHhCHHHHhcCCCCeEEEEeCcCC--
Confidence 4555555566555544211 012344456778999999866666533 22478999999995321
Q ss_pred cccccchHHHHhhcCCceE
Q 008862 455 WAAETYYGEPARKLGLKYI 473 (550)
Q Consensus 455 ~~~~~~Y~~~A~~~Gl~Y~ 473 (550)
..+.| ..|+..|++.+
T Consensus 244 --g~tdf-~~Ak~~G~~a~ 259 (287)
T TIGR02853 244 --GGTDF-EYAKKRGIKAL 259 (287)
T ss_pred --CCCCH-HHHHHCCCEEE
Confidence 34557 78999999985
No 23
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=51.36 E-value=47 Score=34.95 Aligned_cols=71 Identities=21% Similarity=0.413 Sum_probs=52.1
Q ss_pred CCEEEEEEcCCCccccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHhcCCeEEeech-hhhhhhhccCCCcEEEEE
Q 008862 370 KPKLVILSRNGSRAITNENSLVKMAEDIGFQVQVVRPDRTSELAKIYRALNSSDVMVGVHG-AAMTHFLFMKPGSVFIQV 448 (550)
Q Consensus 370 rprlviIsR~~sR~IlNe~evv~~l~~~Gf~V~v~e~~~~~s~~eQi~l~~~aDVlVGvHG-AGLTN~lFmppga~VIEI 448 (550)
.-++++|.|+.. +- .=+..+|.+.|..|.+... .+-++ -+..++|||+|..=| +++...=|.+||++||-+
T Consensus 157 Gk~vvVvGrS~i---VG-kPla~lL~~~~atVtichs-~T~~l---~~~~~~ADIvI~AvG~~~~i~~~~vk~GavVIDv 228 (284)
T PRK14170 157 GKRAVVIGRSNI---VG-KPVAQLLLNENATVTIAHS-RTKDL---PQVAKEADILVVATGLAKFVKKDYIKPGAIVIDV 228 (284)
T ss_pred CCEEEEECCCCc---ch-HHHHHHHHHCCCEEEEeCC-CCCCH---HHHHhhCCEEEEecCCcCccCHHHcCCCCEEEEc
Confidence 347899999864 11 1366677778989988763 23344 345899999998777 677777889999999987
No 24
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=50.81 E-value=44 Score=35.13 Aligned_cols=69 Identities=17% Similarity=0.259 Sum_probs=50.1
Q ss_pred CCEEEEEEcCCC--ccccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHhcCCeEEeech-hhhhhhhccCCCcEEE
Q 008862 370 KPKLVILSRNGS--RAITNENSLVKMAEDIGFQVQVVRPDRTSELAKIYRALNSSDVMVGVHG-AAMTHFLFMKPGSVFI 446 (550)
Q Consensus 370 rprlviIsR~~s--R~IlNe~evv~~l~~~Gf~V~v~e~~~~~s~~eQi~l~~~aDVlVGvHG-AGLTN~lFmppga~VI 446 (550)
.-++++|.|+.. |- +..+|.+.|..|.+... .+ .+..+.+++|||+|+.-| ++|-..=|.+||++||
T Consensus 157 Gk~vvVvGrs~~VG~P------la~lL~~~gAtVtv~hs-~t---~~l~~~~~~ADIvV~AvG~p~~i~~~~vk~GavVI 226 (285)
T PRK14191 157 GKDVVIIGASNIVGKP------LAMLMLNAGASVSVCHI-LT---KDLSFYTQNADIVCVGVGKPDLIKASMVKKGAVVV 226 (285)
T ss_pred CCEEEEECCCchhHHH------HHHHHHHCCCEEEEEeC-Cc---HHHHHHHHhCCEEEEecCCCCcCCHHHcCCCcEEE
Confidence 457899998853 33 56677778999988752 12 223467899999988776 4566666789999999
Q ss_pred EE
Q 008862 447 QV 448 (550)
Q Consensus 447 EI 448 (550)
.+
T Consensus 227 Dv 228 (285)
T PRK14191 227 DI 228 (285)
T ss_pred Ee
Confidence 98
No 25
>cd01981 Pchlide_reductase_B Pchlide_reductase_B: B protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=50.79 E-value=68 Score=35.03 Aligned_cols=101 Identities=17% Similarity=0.281 Sum_probs=71.4
Q ss_pred CCCEEEEEEcCC--CccccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHhcCCeEEeec---hhhhhhhhccCCCc
Q 008862 369 KKPKLVILSRNG--SRAITNENSLVKMAEDIGFQVQVVRPDRTSELAKIYRALNSSDVMVGVH---GAAMTHFLFMKPGS 443 (550)
Q Consensus 369 ~rprlviIsR~~--sR~IlNe~evv~~l~~~Gf~V~v~e~~~~~s~~eQi~l~~~aDVlVGvH---GAGLTN~lFmppga 443 (550)
.++++-||.-.. ...--|..|+.+.|++.|.+|..+-+ ...+++| ++-+.+|++-|.++ |..++..|--+=|.
T Consensus 161 ~~~~VNiiG~~~~~~~~~~d~~ei~~lL~~~Gl~v~~~~~-~~~~~~~-i~~~~~A~lniv~~~~~~~~~a~~L~~~~Gi 238 (430)
T cd01981 161 EKPSVNLIGPSSLGFHNRHDCRELKRLLHTLGIEVNVVIP-EGASVDD-LNELPKAWFNIVPYREYGLSAALYLEEEFGM 238 (430)
T ss_pred CCCcEEEEcCCCCCCCCcchHHHHHHHHHHcCCeEEEEEc-CCCCHHH-HHhhhhCeEEEEecHHHHHHHHHHHHHHhCC
Confidence 345666775432 24457888999999999999987654 3567755 56677777766654 45566666656676
Q ss_pred EEEEEecCCCCcccccchHHHHhhcCCce
Q 008862 444 VFIQVIPLGTDWAAETYYGEPARKLGLKY 472 (550)
Q Consensus 444 ~VIEI~P~g~~~~~~~~Y~~~A~~~Gl~Y 472 (550)
-.+...|+|++- ...+.+.+++.+|+..
T Consensus 239 P~~~~~p~G~~~-t~~~l~~i~~~~g~~~ 266 (430)
T cd01981 239 PSVKITPIGVVA-TARFLREIQELLGIQI 266 (430)
T ss_pred CeEeccCCChHH-HHHHHHHHHHHhCCcc
Confidence 677779999642 4578999999999773
No 26
>cd01972 Nitrogenase_VnfE_like Nitrogenase_VnfE_like: VnfE subunit of the VnfEN complex_like. This group in addition to VnfE contains a subset of the alpha subunit of the nitrogenase MoFe protein and NifE-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protein for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=50.49 E-value=35 Score=37.27 Aligned_cols=98 Identities=15% Similarity=0.253 Sum_probs=67.8
Q ss_pred CCEEEEEEcCCC--cc-ccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHhcCCeEEeech-hhhhhhhcc--CCCc
Q 008862 370 KPKLVILSRNGS--RA-ITNENSLVKMAEDIGFQVQVVRPDRTSELAKIYRALNSSDVMVGVHG-AAMTHFLFM--KPGS 443 (550)
Q Consensus 370 rprlviIsR~~s--R~-IlNe~evv~~l~~~Gf~V~v~e~~~~~s~~eQi~l~~~aDVlVGvHG-AGLTN~lFm--ppga 443 (550)
++.|-||.-... +. --|..|+.+.|++.|++|+.+-+ ...+++| ++-+.+|.+-|.++. +|+.=+-+| +=|.
T Consensus 161 ~~~VNliG~~~~~~~~~~~d~~ei~~lL~~~Gi~v~~~~~-~~~~~~e-i~~~~~A~lniv~~~~~g~~~a~~Lee~~Gi 238 (426)
T cd01972 161 EDSVNIIGLWGGPERTEQEDVDEFKRLLNELGLRVNAIIA-GGCSVEE-LERASEAAANVTLCLDLGYYLGAALEQRFGV 238 (426)
T ss_pred CCCEEEEccCCCccccccccHHHHHHHHHHcCCeEEEEeC-CCCCHHH-HHhcccCCEEEEEChhHHHHHHHHHHHHhCC
Confidence 456667755432 11 36789999999999999987754 3577766 566888888887774 444444444 4466
Q ss_pred EEEEE-ecCCCCcccccchHHHHhhcCC
Q 008862 444 VFIQV-IPLGTDWAAETYYGEPARKLGL 470 (550)
Q Consensus 444 ~VIEI-~P~g~~~~~~~~Y~~~A~~~Gl 470 (550)
-.+++ +|+|.+ ....|++.+|+.+|+
T Consensus 239 P~~~~~~P~G~~-~T~~~l~~ia~~~g~ 265 (426)
T cd01972 239 PEIKAPQPYGIE-ATDKWLREIAKVLGM 265 (426)
T ss_pred CeEecCCccCHH-HHHHHHHHHHHHhCC
Confidence 67776 689853 245688999998886
No 27
>PRK10319 N-acetylmuramoyl-l-alanine amidase I; Provisional
Probab=50.23 E-value=31 Score=36.15 Aligned_cols=57 Identities=16% Similarity=0.292 Sum_probs=40.6
Q ss_pred HHHHHHHcCCEEEEEecC-CCCCHHHHHHHHh--cCCeEEeechhhhhhhhccCCCcEEEEEecC
Q 008862 390 LVKMAEDIGFQVQVVRPD-RTSELAKIYRALN--SSDVMVGVHGAAMTHFLFMKPGSVFIQVIPL 451 (550)
Q Consensus 390 vv~~l~~~Gf~V~v~e~~-~~~s~~eQi~l~~--~aDVlVGvHGAGLTN~lFmppga~VIEI~P~ 451 (550)
|.+.|++.|++|+..... ...++.+-+++.+ .||++|++|--+.++ +.+.=+|++-+
T Consensus 91 l~~~L~~~G~~V~lTR~~D~~vsL~~R~~~An~~~ADlFISIH~Ns~~~-----~~a~G~evy~~ 150 (287)
T PRK10319 91 VRSILRNHGIDARLTRSGDTFIPLYDRVEIAHKHGADLFMSIHADGFTN-----PKAAGASVFAL 150 (287)
T ss_pred HHHHHHHCCCEEEEeCCCCCCCCHHHHHHHHHhcCCCEEEEecCCCCCC-----CCCcEEEEEEe
Confidence 345555679999887643 5578999999997 899999999655432 34555666543
No 28
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=49.81 E-value=48 Score=34.82 Aligned_cols=72 Identities=21% Similarity=0.369 Sum_probs=52.3
Q ss_pred CCCEEEEEEcCCCccccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHhcCCeEEeech-hhhhhhhccCCCcEEEE
Q 008862 369 KKPKLVILSRNGSRAITNENSLVKMAEDIGFQVQVVRPDRTSELAKIYRALNSSDVMVGVHG-AAMTHFLFMKPGSVFIQ 447 (550)
Q Consensus 369 ~rprlviIsR~~sR~IlNe~evv~~l~~~Gf~V~v~e~~~~~s~~eQi~l~~~aDVlVGvHG-AGLTN~lFmppga~VIE 447 (550)
..-++++|.|++. =-.-+..+|.+.|..|.+... .+.++. ..+++|||+|..=| +++-+.=|++||++||-
T Consensus 157 ~Gk~vvViGrs~i----VGkPla~lL~~~~atVt~~hs-~t~~l~---~~~~~ADIVV~avG~~~~i~~~~ik~gavVID 228 (285)
T PRK14189 157 RGAHAVVIGRSNI----VGKPMAMLLLQAGATVTICHS-KTRDLA---AHTRQADIVVAAVGKRNVLTADMVKPGATVID 228 (285)
T ss_pred CCCEEEEECCCCc----cHHHHHHHHHHCCCEEEEecC-CCCCHH---HHhhhCCEEEEcCCCcCccCHHHcCCCCEEEE
Confidence 3457899988864 112477788888999988753 233343 56889999988777 46667778999999998
Q ss_pred E
Q 008862 448 V 448 (550)
Q Consensus 448 I 448 (550)
+
T Consensus 229 V 229 (285)
T PRK14189 229 V 229 (285)
T ss_pred c
Confidence 7
No 29
>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=49.13 E-value=50 Score=35.69 Aligned_cols=71 Identities=18% Similarity=0.310 Sum_probs=52.5
Q ss_pred CCEEEEEEcCCCccccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHhcCCeEEeech-hhhhhhhccCCCcEEEEE
Q 008862 370 KPKLVILSRNGSRAITNENSLVKMAEDIGFQVQVVRPDRTSELAKIYRALNSSDVMVGVHG-AAMTHFLFMKPGSVFIQV 448 (550)
Q Consensus 370 rprlviIsR~~sR~IlNe~evv~~l~~~Gf~V~v~e~~~~~s~~eQi~l~~~aDVlVGvHG-AGLTN~lFmppga~VIEI 448 (550)
.-++++|.|+.. +-- =+..+|.+.|..|.+... .+.++ -+..++|||+|..=| +++...=|.+||++||-+
T Consensus 214 GK~vvVIGRS~i---VGk-Pla~LL~~~~ATVTicHs-~T~nl---~~~~~~ADIvIsAvGkp~~v~~d~vk~GavVIDV 285 (345)
T PLN02897 214 GKNAVVIGRSNI---VGL-PMSLLLQRHDATVSTVHA-FTKDP---EQITRKADIVIAAAGIPNLVRGSWLKPGAVVIDV 285 (345)
T ss_pred CCEEEEECCCcc---ccH-HHHHHHHHCCCEEEEEcC-CCCCH---HHHHhhCCEEEEccCCcCccCHHHcCCCCEEEEc
Confidence 346889999863 111 256677778889988763 33344 456899999988766 678888899999999987
No 30
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=47.83 E-value=67 Score=33.55 Aligned_cols=94 Identities=19% Similarity=0.256 Sum_probs=55.4
Q ss_pred CEEEEEEcCCC-ccccCHHHHHHHHHHcCCEEEEEecCCC------------CCHHHHHHHHhcCCeEEeechhhh-hhh
Q 008862 371 PKLVILSRNGS-RAITNENSLVKMAEDIGFQVQVVRPDRT------------SELAKIYRALNSSDVMVGVHGAAM-THF 436 (550)
Q Consensus 371 prlviIsR~~s-R~IlNe~evv~~l~~~Gf~V~v~e~~~~------------~s~~eQi~l~~~aDVlVGvHGAGL-TN~ 436 (550)
-++++|.-.+. | .++..|+..|.+|.+.+.... ..+.+-.+.+.++|++|..=++++ +..
T Consensus 153 ~kvlViG~G~iG~------~~a~~L~~~Ga~V~v~~r~~~~~~~~~~~G~~~~~~~~l~~~l~~aDiVI~t~p~~~i~~~ 226 (296)
T PRK08306 153 SNVLVLGFGRTGM------TLARTLKALGANVTVGARKSAHLARITEMGLSPFHLSELAEEVGKIDIIFNTIPALVLTKE 226 (296)
T ss_pred CEEEEECCcHHHH------HHHHHHHHCCCEEEEEECCHHHHHHHHHcCCeeecHHHHHHHhCCCCEEEECCChhhhhHH
Confidence 35666654321 2 255666667777766543210 123334466789999997655553 333
Q ss_pred h--ccCCCcEEEEEecCCCCcccccchHHHHhhcCCceEEE
Q 008862 437 L--FMKPGSVFIQVIPLGTDWAAETYYGEPARKLGLKYIGY 475 (550)
Q Consensus 437 l--Fmppga~VIEI~P~g~~~~~~~~Y~~~A~~~Gl~Y~~y 475 (550)
+ .|+||+++|.+--.. ....| ..|+..|++.+.+
T Consensus 227 ~l~~~~~g~vIIDla~~p----ggtd~-~~a~~~Gv~~~~~ 262 (296)
T PRK08306 227 VLSKMPPEALIIDLASKP----GGTDF-EYAEKRGIKALLA 262 (296)
T ss_pred HHHcCCCCcEEEEEccCC----CCcCe-eehhhCCeEEEEE
Confidence 3 389999999995221 11334 5677888888644
No 31
>PRK02910 light-independent protochlorophyllide reductase subunit B; Provisional
Probab=47.38 E-value=53 Score=37.10 Aligned_cols=100 Identities=19% Similarity=0.328 Sum_probs=72.4
Q ss_pred CCCEEEEEEcC--CCccccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHhcCCeEEeech-hhhhhhhccCC--Cc
Q 008862 369 KKPKLVILSRN--GSRAITNENSLVKMAEDIGFQVQVVRPDRTSELAKIYRALNSSDVMVGVHG-AAMTHFLFMKP--GS 443 (550)
Q Consensus 369 ~rprlviIsR~--~sR~IlNe~evv~~l~~~Gf~V~v~e~~~~~s~~eQi~l~~~aDVlVGvHG-AGLTN~lFmpp--ga 443 (550)
.+++|-||.=. +.+.--|..||.+.|++.|.+|.++-+ ...++ ++++-+.+|++-|.+++ .|..=.-+|.. |.
T Consensus 157 ~~~~VNIiG~~~l~f~~~~D~~EikrlL~~~Gi~vn~v~p-~g~s~-~di~~l~~A~~nivl~~~~g~~~A~~Lee~fGi 234 (519)
T PRK02910 157 ARPSVNLLGPTALGFHHRDDLTELRRLLATLGIDVNVVAP-LGASP-ADLKRLPAAWFNVVLYREIGESAARYLEREFGQ 234 (519)
T ss_pred CCCeEEEEecCccCCCChhHHHHHHHHHHHcCCeEEEEeC-CCCCH-HHHHhcccCcEEEEeCHHHHHHHHHHHHHHhCC
Confidence 46777787543 234556788999999999999988755 35666 55677889999888887 56665566553 45
Q ss_pred EEEEEecCCCCcccccchHHHHhhcCCc
Q 008862 444 VFIQVIPLGTDWAAETYYGEPARKLGLK 471 (550)
Q Consensus 444 ~VIEI~P~g~~~~~~~~Y~~~A~~~Gl~ 471 (550)
-.+...|.|++ ....|-+.+|+.+|+.
T Consensus 235 P~i~~~PiG~~-~T~~fL~~la~~~g~~ 261 (519)
T PRK02910 235 PYVKTVPIGVG-ATARFIREVAELLNLD 261 (519)
T ss_pred cccccccccHH-HHHHHHHHHHHHhCCC
Confidence 45677899964 2456788999999875
No 32
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=47.24 E-value=61 Score=34.07 Aligned_cols=70 Identities=23% Similarity=0.362 Sum_probs=51.8
Q ss_pred CEEEEEEcCCCccccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHhcCCeEEeech-hhhhhhhccCCCcEEEEE
Q 008862 371 PKLVILSRNGSRAITNENSLVKMAEDIGFQVQVVRPDRTSELAKIYRALNSSDVMVGVHG-AAMTHFLFMKPGSVFIQV 448 (550)
Q Consensus 371 prlviIsR~~sR~IlNe~evv~~l~~~Gf~V~v~e~~~~~s~~eQi~l~~~aDVlVGvHG-AGLTN~lFmppga~VIEI 448 (550)
-++++|.|+.. +- .=+..+|.+.|..|.+... .+.++. +..++|||+|..=| +++...=|.+||++||-+
T Consensus 157 k~vvViGrS~i---VG-kPla~lL~~~~atVtichs-~T~~l~---~~~~~ADIvI~AvG~p~~i~~~~vk~GavVIDv 227 (282)
T PRK14169 157 KRVVIVGRSNI---VG-RPLAGLMVNHDATVTIAHS-KTRNLK---QLTKEADILVVAVGVPHFIGADAVKPGAVVIDV 227 (282)
T ss_pred CEEEEECCCcc---ch-HHHHHHHHHCCCEEEEECC-CCCCHH---HHHhhCCEEEEccCCcCccCHHHcCCCcEEEEe
Confidence 47899998864 11 1366777778999988753 344443 46899999887766 677778899999999987
No 33
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=47.06 E-value=62 Score=34.05 Aligned_cols=71 Identities=15% Similarity=0.353 Sum_probs=52.0
Q ss_pred CCEEEEEEcCCCccccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHhcCCeEEeech-hhhhhhhccCCCcEEEEE
Q 008862 370 KPKLVILSRNGSRAITNENSLVKMAEDIGFQVQVVRPDRTSELAKIYRALNSSDVMVGVHG-AAMTHFLFMKPGSVFIQV 448 (550)
Q Consensus 370 rprlviIsR~~sR~IlNe~evv~~l~~~Gf~V~v~e~~~~~s~~eQi~l~~~aDVlVGvHG-AGLTN~lFmppga~VIEI 448 (550)
.-++++|.|+.. =-.-+..+|.+.|..|.+... .+.+++ +..++|||+|+.=| +++-..=|.+||++||-+
T Consensus 159 Gk~vvViGrS~i----VGkPla~lL~~~~atVt~chs-~T~~l~---~~~~~ADIvIsAvGk~~~i~~~~ik~gavVIDv 230 (284)
T PRK14177 159 GKNAVVVGRSPI----LGKPMAMLLTEMNATVTLCHS-KTQNLP---SIVRQADIIVGAVGKPEFIKADWISEGAVLLDA 230 (284)
T ss_pred CCEEEEECCCCc----chHHHHHHHHHCCCEEEEeCC-CCCCHH---HHHhhCCEEEEeCCCcCccCHHHcCCCCEEEEe
Confidence 346889988863 112366777788999998763 334444 45899999987766 567777789999999997
No 34
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=46.75 E-value=61 Score=33.96 Aligned_cols=71 Identities=17% Similarity=0.346 Sum_probs=51.5
Q ss_pred CCEEEEEEcCCCccccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHhcCCeEEeech-hhhhhhhccCCCcEEEEE
Q 008862 370 KPKLVILSRNGSRAITNENSLVKMAEDIGFQVQVVRPDRTSELAKIYRALNSSDVMVGVHG-AAMTHFLFMKPGSVFIQV 448 (550)
Q Consensus 370 rprlviIsR~~sR~IlNe~evv~~l~~~Gf~V~v~e~~~~~s~~eQi~l~~~aDVlVGvHG-AGLTN~lFmppga~VIEI 448 (550)
.-++++|.|+.. +- .-+..+|.+.|..|.+... .+-++. +..++|||+|..=| +++-..=|.+||++||-+
T Consensus 158 Gk~vvViGrS~~---VG-kPla~lL~~~~AtVt~chs-~T~~l~---~~~~~ADIvIsAvGkp~~i~~~~ik~gavVIDv 229 (278)
T PRK14172 158 GKEVVVIGRSNI---VG-KPVAQLLLNENATVTICHS-KTKNLK---EVCKKADILVVAIGRPKFIDEEYVKEGAIVIDV 229 (278)
T ss_pred CCEEEEECCCcc---ch-HHHHHHHHHCCCEEEEeCC-CCCCHH---HHHhhCCEEEEcCCCcCccCHHHcCCCcEEEEe
Confidence 346899998864 11 1366777778999988863 233444 45789999988766 567777788999999998
No 35
>COG3959 Transketolase, N-terminal subunit [Carbohydrate transport and metabolism]
Probab=46.14 E-value=33 Score=35.11 Aligned_cols=49 Identities=24% Similarity=0.384 Sum_probs=41.6
Q ss_pred CEEEEEEcCC------CccccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHhcC
Q 008862 371 PKLVILSRNG------SRAITNENSLVKMAEDIGFQVQVVRPDRTSELAKIYRALNSS 422 (550)
Q Consensus 371 prlviIsR~~------sR~IlNe~evv~~l~~~Gf~V~v~e~~~~~s~~eQi~l~~~a 422 (550)
--+.||+|++ +..|.|.+.+.+..+++|++|+.++ ..++++.++.+.++
T Consensus 172 NLiaivD~N~~QldG~t~~i~~~~pL~~k~eAFGw~V~evd---G~d~~~i~~a~~~~ 226 (243)
T COG3959 172 NLIAIVDRNKLQLDGETEEIMPKEPLADKWEAFGWEVIEVD---GHDIEEIVEALEKA 226 (243)
T ss_pred cEEEEEecCCcccCCchhhccCcchhHHHHHhcCceEEEEc---CcCHHHHHHHHHhh
Confidence 3477899987 4999999999999999999999886 46888888877665
No 36
>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=45.61 E-value=68 Score=33.74 Aligned_cols=71 Identities=23% Similarity=0.396 Sum_probs=51.8
Q ss_pred CCEEEEEEcCCCccccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHhcCCeEEeech-hhhhhhhccCCCcEEEEE
Q 008862 370 KPKLVILSRNGSRAITNENSLVKMAEDIGFQVQVVRPDRTSELAKIYRALNSSDVMVGVHG-AAMTHFLFMKPGSVFIQV 448 (550)
Q Consensus 370 rprlviIsR~~sR~IlNe~evv~~l~~~Gf~V~v~e~~~~~s~~eQi~l~~~aDVlVGvHG-AGLTN~lFmppga~VIEI 448 (550)
.-++++|.|+.. +- .-+..+|.+.|..|.+... .+.+++ +.+++|||+|..=| +++...=|.+||++||-+
T Consensus 157 Gk~vvViGrS~i---VG-kPla~lL~~~~AtVtichs-~T~nl~---~~~~~ADIvI~AvGk~~~i~~~~ik~gaiVIDv 228 (282)
T PRK14182 157 GKRALVVGRSNI---VG-KPMAMMLLERHATVTIAHS-RTADLA---GEVGRADILVAAIGKAELVKGAWVKEGAVVIDV 228 (282)
T ss_pred CCEEEEECCCCc---ch-HHHHHHHHHCCCEEEEeCC-CCCCHH---HHHhhCCEEEEecCCcCccCHHHcCCCCEEEEe
Confidence 346899998864 11 1366777778888888764 334454 45789999988776 567777789999999987
No 37
>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=45.44 E-value=66 Score=33.92 Aligned_cols=70 Identities=20% Similarity=0.341 Sum_probs=51.0
Q ss_pred CEEEEEEcCCCccccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHhcCCeEEeech-hhhhhhhccCCCcEEEEE
Q 008862 371 PKLVILSRNGSRAITNENSLVKMAEDIGFQVQVVRPDRTSELAKIYRALNSSDVMVGVHG-AAMTHFLFMKPGSVFIQV 448 (550)
Q Consensus 371 prlviIsR~~sR~IlNe~evv~~l~~~Gf~V~v~e~~~~~s~~eQi~l~~~aDVlVGvHG-AGLTN~lFmppga~VIEI 448 (550)
-++++|.|+.. + -.-+..+|.+.|..|.+... .+.++. +..++|||+|..=| +++...=|.+||++||-+
T Consensus 160 K~vvViGrS~i---V-GkPla~lL~~~~ATVtichs-~T~~L~---~~~~~ADIvV~AvGkp~~i~~~~vk~GavVIDv 230 (288)
T PRK14171 160 KNVVIIGRSNI---V-GKPLSALLLKENCSVTICHS-KTHNLS---SITSKADIVVAAIGSPLKLTAEYFNPESIVIDV 230 (288)
T ss_pred CEEEEECCCCc---c-hHHHHHHHHHCCCEEEEeCC-CCCCHH---HHHhhCCEEEEccCCCCccCHHHcCCCCEEEEe
Confidence 36899988863 1 12366777778989988753 344454 45889999998777 566677788999999987
No 38
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=44.70 E-value=87 Score=32.69 Aligned_cols=82 Identities=18% Similarity=0.214 Sum_probs=52.7
Q ss_pred HHHHHHHHHcCCEEEEEecC-CCC-----CHH-HHHHHHhcCCeEEee----------chh--------hhhhhhccCCC
Q 008862 388 NSLVKMAEDIGFQVQVVRPD-RTS-----ELA-KIYRALNSSDVMVGV----------HGA--------AMTHFLFMKPG 442 (550)
Q Consensus 388 ~evv~~l~~~Gf~V~v~e~~-~~~-----s~~-eQi~l~~~aDVlVGv----------HGA--------GLTN~lFmppg 442 (550)
-++++.|.+.|++|.+..+. +.. .+. ..-+.+.+|||+|.| ++. .-..+=-||+|
T Consensus 15 ~~~~~~l~~~G~~v~~~g~~~~~~~~~g~~~~~~~~~~~~~ad~ii~~~p~~~~~~~i~~~~~~~~~~~~~~~l~~l~~~ 94 (296)
T PRK08306 15 LELIRKLVELGAKVSLVGFDQLDHGFTGATKSSSLEEALSDVDVIILPVPGTNDEGNVDTVFSNEKLVLTEELLELTPEH 94 (296)
T ss_pred HHHHHHHHHCCCEEEEEeccccccccCCceeeccHHHHhccCCEEEECCccccCCceeeccccccCCcchHHHHHhcCCC
Confidence 36889999999999986542 212 111 223568999999988 433 22345578999
Q ss_pred cEEEEEecCCCCcccccchHHHHhhcCCceEEEE
Q 008862 443 SVFIQVIPLGTDWAAETYYGEPARKLGLKYIGYT 476 (550)
Q Consensus 443 a~VIEI~P~g~~~~~~~~Y~~~A~~~Gl~Y~~y~ 476 (550)
..++ . |+ ........+...|+..+.|.
T Consensus 95 ~~v~--~--G~---~~~~~~~~~~~~gi~~~~~~ 121 (296)
T PRK08306 95 CTIF--S--GI---ANPYLKELAKETNRKLVELF 121 (296)
T ss_pred CEEE--E--ec---CCHHHHHHHHHCCCeEEEEe
Confidence 7554 2 31 12235567889999987665
No 39
>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=43.63 E-value=66 Score=35.03 Aligned_cols=71 Identities=21% Similarity=0.361 Sum_probs=52.2
Q ss_pred CCEEEEEEcCCCccccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHhcCCeEEeech-hhhhhhhccCCCcEEEEE
Q 008862 370 KPKLVILSRNGSRAITNENSLVKMAEDIGFQVQVVRPDRTSELAKIYRALNSSDVMVGVHG-AAMTHFLFMKPGSVFIQV 448 (550)
Q Consensus 370 rprlviIsR~~sR~IlNe~evv~~l~~~Gf~V~v~e~~~~~s~~eQi~l~~~aDVlVGvHG-AGLTN~lFmppga~VIEI 448 (550)
.-++++|.|+.. +- .-+..+|.+.|..|.+... .+-++. +..++|||+|..=| +++...=|.+||++||-+
T Consensus 231 GK~vvVIGRS~i---VG-kPLa~LL~~~~ATVTicHs-~T~nl~---~~~r~ADIVIsAvGkp~~i~~d~vK~GAvVIDV 302 (364)
T PLN02616 231 GKRAVVIGRSNI---VG-MPAALLLQREDATVSIVHS-RTKNPE---EITREADIIISAVGQPNMVRGSWIKPGAVVIDV 302 (364)
T ss_pred CCEEEEECCCcc---cc-HHHHHHHHHCCCeEEEeCC-CCCCHH---HHHhhCCEEEEcCCCcCcCCHHHcCCCCEEEec
Confidence 346889998863 11 1366777778889988863 344454 45799999988766 677778889999999987
No 40
>PF13271 DUF4062: Domain of unknown function (DUF4062)
Probab=43.43 E-value=58 Score=27.35 Aligned_cols=44 Identities=14% Similarity=0.264 Sum_probs=32.7
Q ss_pred HHHHHHHHcCCEEEEEec---CCCCCHHHHHHHHhcCCeEEeechhh
Q 008862 389 SLVKMAEDIGFQVQVVRP---DRTSELAKIYRALNSSDVMVGVHGAA 432 (550)
Q Consensus 389 evv~~l~~~Gf~V~v~e~---~~~~s~~eQi~l~~~aDVlVGvHGAG 432 (550)
.+.+.+.+.|+..+.++. ....+..-.++.+.+||++||+=|.-
T Consensus 17 ~l~~~i~~~~~~~~~~e~~~a~~~~~~~~cl~~v~~cDifI~ilG~r 63 (83)
T PF13271_consen 17 ALIEAIRRLGCEPVGMEFFPASDQSPLEICLKEVDECDIFILILGNR 63 (83)
T ss_pred HHHHHHHHCCCeeeeeeeecCCCCCHHHHHHHHHhhCCEEEEeeccc
Confidence 456777777887776653 24456777788999999999988754
No 41
>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]
Probab=43.41 E-value=57 Score=34.36 Aligned_cols=70 Identities=23% Similarity=0.375 Sum_probs=54.9
Q ss_pred CCCEEEEEEcCCC--ccccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHhcCCeEEeech-hhhhhhhccCCCcEE
Q 008862 369 KKPKLVILSRNGS--RAITNENSLVKMAEDIGFQVQVVRPDRTSELAKIYRALNSSDVMVGVHG-AAMTHFLFMKPGSVF 445 (550)
Q Consensus 369 ~rprlviIsR~~s--R~IlNe~evv~~l~~~Gf~V~v~e~~~~~s~~eQi~l~~~aDVlVGvHG-AGLTN~lFmppga~V 445 (550)
..-++++|.|+.. |= +..+|...+..|.+..- .+ .+-.+..++|||+|..=| +++...=|..||++|
T Consensus 155 ~Gk~~vVVGrS~iVGkP------la~lL~~~naTVtvcHs-~T---~~l~~~~k~ADIvv~AvG~p~~i~~d~vk~gavV 224 (283)
T COG0190 155 RGKNVVVVGRSNIVGKP------LALLLLNANATVTVCHS-RT---KDLASITKNADIVVVAVGKPHFIKADMVKPGAVV 224 (283)
T ss_pred CCCEEEEECCCCcCcHH------HHHHHHhCCCEEEEEcC-CC---CCHHHHhhhCCEEEEecCCccccccccccCCCEE
Confidence 3467899999874 43 67778889999998753 22 344677899999998877 678888899999999
Q ss_pred EEE
Q 008862 446 IQV 448 (550)
Q Consensus 446 IEI 448 (550)
|-+
T Consensus 225 IDV 227 (283)
T COG0190 225 IDV 227 (283)
T ss_pred Eec
Confidence 988
No 42
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=43.19 E-value=76 Score=33.35 Aligned_cols=71 Identities=11% Similarity=0.214 Sum_probs=51.6
Q ss_pred CCEEEEEEcCCCccccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHhcCCeEEeech-hhhhhhhccCCCcEEEEE
Q 008862 370 KPKLVILSRNGSRAITNENSLVKMAEDIGFQVQVVRPDRTSELAKIYRALNSSDVMVGVHG-AAMTHFLFMKPGSVFIQV 448 (550)
Q Consensus 370 rprlviIsR~~sR~IlNe~evv~~l~~~Gf~V~v~e~~~~~s~~eQi~l~~~aDVlVGvHG-AGLTN~lFmppga~VIEI 448 (550)
.-++++|.|+.. +- .-+..+|.+.|..|.+... .+-++ .+.+++|||+|..-| ++|-..=|.+||++||.+
T Consensus 157 Gk~vvViGrS~~---VG-~Pla~lL~~~~AtVti~hs-~T~~l---~~~~~~ADIvV~AvGkp~~i~~~~vk~gavvIDv 228 (281)
T PRK14183 157 GKDVCVVGASNI---VG-KPMAALLLNANATVDICHI-FTKDL---KAHTKKADIVIVGVGKPNLITEDMVKEGAIVIDI 228 (281)
T ss_pred CCEEEEECCCCc---ch-HHHHHHHHHCCCEEEEeCC-CCcCH---HHHHhhCCEEEEecCcccccCHHHcCCCcEEEEe
Confidence 347899998863 11 1266677778888887642 23334 357899999988777 677778889999999998
No 43
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=43.09 E-value=75 Score=33.42 Aligned_cols=72 Identities=19% Similarity=0.232 Sum_probs=51.7
Q ss_pred CCEEEEEEcCCCccccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHhcCCeEEeech-hhhhhhhccCCCcEEEEE
Q 008862 370 KPKLVILSRNGSRAITNENSLVKMAEDIGFQVQVVRPDRTSELAKIYRALNSSDVMVGVHG-AAMTHFLFMKPGSVFIQV 448 (550)
Q Consensus 370 rprlviIsR~~sR~IlNe~evv~~l~~~Gf~V~v~e~~~~~s~~eQi~l~~~aDVlVGvHG-AGLTN~lFmppga~VIEI 448 (550)
.-++++|.|+.. + -.-+..+|.+.|..|.+... .+-++ -+.+++|||+|..=| +++-..=|.+||++||.+
T Consensus 159 Gk~vvViGrs~i---V-G~Pla~lL~~~~atVtv~hs-~T~~l---~~~~~~ADIvi~avG~p~~v~~~~vk~gavVIDv 230 (285)
T PRK10792 159 GLNAVVVGASNI---V-GRPMSLELLLAGCTVTVCHR-FTKNL---RHHVRNADLLVVAVGKPGFIPGEWIKPGAIVIDV 230 (285)
T ss_pred CCEEEEECCCcc---c-HHHHHHHHHHCCCeEEEEEC-CCCCH---HHHHhhCCEEEEcCCCcccccHHHcCCCcEEEEc
Confidence 457889988763 1 11366777888999988763 23333 346899999998876 566666788999999998
Q ss_pred e
Q 008862 449 I 449 (550)
Q Consensus 449 ~ 449 (550)
=
T Consensus 231 G 231 (285)
T PRK10792 231 G 231 (285)
T ss_pred c
Confidence 3
No 44
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=43.02 E-value=74 Score=33.67 Aligned_cols=70 Identities=26% Similarity=0.392 Sum_probs=50.5
Q ss_pred CEEEEEEcCCCccccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHhcCCeEEeech-hhhhhhhccCCCcEEEEE
Q 008862 371 PKLVILSRNGSRAITNENSLVKMAEDIGFQVQVVRPDRTSELAKIYRALNSSDVMVGVHG-AAMTHFLFMKPGSVFIQV 448 (550)
Q Consensus 371 prlviIsR~~sR~IlNe~evv~~l~~~Gf~V~v~e~~~~~s~~eQi~l~~~aDVlVGvHG-AGLTN~lFmppga~VIEI 448 (550)
-++++|.|+.. +- .=+..+|.+.|..|.+... .+.++. +..++|||+|..=| +++-..=|.+||++||-+
T Consensus 159 k~vvVIGrS~i---VG-kPla~lL~~~~atVtv~hs-~T~~l~---~~~~~ADIvIsAvGkp~~i~~~~ik~gavVIDv 229 (297)
T PRK14186 159 KKAVVVGRSIL---VG-KPLALMLLAANATVTIAHS-RTQDLA---SITREADILVAAAGRPNLIGAEMVKPGAVVVDV 229 (297)
T ss_pred CEEEEECCCcc---ch-HHHHHHHHHCCCEEEEeCC-CCCCHH---HHHhhCCEEEEccCCcCccCHHHcCCCCEEEEe
Confidence 46899998863 11 1366777778999988863 334444 45789999998766 456666689999999987
No 45
>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=42.39 E-value=76 Score=33.42 Aligned_cols=71 Identities=20% Similarity=0.348 Sum_probs=50.8
Q ss_pred CCEEEEEEcCCCccccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHhcCCeEEeech-hhhhhhhccCCCcEEEEE
Q 008862 370 KPKLVILSRNGSRAITNENSLVKMAEDIGFQVQVVRPDRTSELAKIYRALNSSDVMVGVHG-AAMTHFLFMKPGSVFIQV 448 (550)
Q Consensus 370 rprlviIsR~~sR~IlNe~evv~~l~~~Gf~V~v~e~~~~~s~~eQi~l~~~aDVlVGvHG-AGLTN~lFmppga~VIEI 448 (550)
.-++++|.|+.. +- .=+..+|.+.|..|.+... .+.+++ ...++|||+|..=| +++-..=|.+||++||-+
T Consensus 155 Gk~vvViGrS~i---VG-kPla~lL~~~~aTVtichs-~T~~l~---~~~~~ADIvIsAvGkp~~i~~~~vk~GavVIDV 226 (287)
T PRK14173 155 GKEVVVVGRSNI---VG-KPLAALLLREDATVTLAHS-KTQDLP---AVTRRADVLVVAVGRPHLITPEMVRPGAVVVDV 226 (287)
T ss_pred CCEEEEECCCCc---cH-HHHHHHHHHCCCEEEEeCC-CCCCHH---HHHhhCCEEEEecCCcCccCHHHcCCCCEEEEc
Confidence 347899998864 11 1356677778888988753 333444 56889999988776 566666688999999987
No 46
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=42.24 E-value=77 Score=33.29 Aligned_cols=71 Identities=18% Similarity=0.284 Sum_probs=51.5
Q ss_pred CCEEEEEEcCCCccccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHhcCCeEEeech-hhhhhhhccCCCcEEEEE
Q 008862 370 KPKLVILSRNGSRAITNENSLVKMAEDIGFQVQVVRPDRTSELAKIYRALNSSDVMVGVHG-AAMTHFLFMKPGSVFIQV 448 (550)
Q Consensus 370 rprlviIsR~~sR~IlNe~evv~~l~~~Gf~V~v~e~~~~~s~~eQi~l~~~aDVlVGvHG-AGLTN~lFmppga~VIEI 448 (550)
.-++++|.|+.. +- .=+..+|.+.|..|.+... .+-++ .+..++|||+|..=| +++...=|.+||++||-+
T Consensus 157 Gk~vvVvGrS~i---VG-kPla~lL~~~~atVt~chs-~T~nl---~~~~~~ADIvIsAvGkp~~i~~~~vk~GavVIDv 228 (282)
T PRK14166 157 GKDAVIIGASNI---VG-RPMATMLLNAGATVSVCHI-KTKDL---SLYTRQADLIIVAAGCVNLLRSDMVKEGVIVVDV 228 (282)
T ss_pred CCEEEEECCCCc---ch-HHHHHHHHHCCCEEEEeCC-CCCCH---HHHHhhCCEEEEcCCCcCccCHHHcCCCCEEEEe
Confidence 346889998864 11 1366777778999988753 23334 346899999988776 677777789999999997
No 47
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=40.20 E-value=86 Score=32.96 Aligned_cols=71 Identities=15% Similarity=0.234 Sum_probs=51.8
Q ss_pred CCEEEEEEcCCCccccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHhcCCeEEeech-hhhhhhhccCCCcEEEEE
Q 008862 370 KPKLVILSRNGSRAITNENSLVKMAEDIGFQVQVVRPDRTSELAKIYRALNSSDVMVGVHG-AAMTHFLFMKPGSVFIQV 448 (550)
Q Consensus 370 rprlviIsR~~sR~IlNe~evv~~l~~~Gf~V~v~e~~~~~s~~eQi~l~~~aDVlVGvHG-AGLTN~lFmppga~VIEI 448 (550)
.-++++|.|+.. +- .=+..+|.+.|..|.+... .+.++. +..++|||+|..=| +++-..=|.+||++||-+
T Consensus 158 Gk~vvViGrS~~---VG-kPla~lL~~~~ATVt~chs-~T~dl~---~~~k~ADIvIsAvGkp~~i~~~~vk~gavVIDv 229 (282)
T PRK14180 158 GAYAVVVGASNV---VG-KPVSQLLLNAKATVTTCHR-FTTDLK---SHTTKADILIVAVGKPNFITADMVKEGAVVIDV 229 (282)
T ss_pred CCEEEEECCCCc---ch-HHHHHHHHHCCCEEEEEcC-CCCCHH---HHhhhcCEEEEccCCcCcCCHHHcCCCcEEEEe
Confidence 346899998864 11 1366677778989988753 233444 45899999988777 677777888999999997
No 48
>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase. The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional
Probab=40.14 E-value=61 Score=32.36 Aligned_cols=75 Identities=17% Similarity=0.234 Sum_probs=50.8
Q ss_pred CCEEEEEEcCCCccccCHHHHHHHHHHcCCEEEEEec-------------CCCC---CHHH-HHHHHhcCCeEEeech-h
Q 008862 370 KPKLVILSRNGSRAITNENSLVKMAEDIGFQVQVVRP-------------DRTS---ELAK-IYRALNSSDVMVGVHG-A 431 (550)
Q Consensus 370 rprlviIsR~~sR~IlNe~evv~~l~~~Gf~V~v~e~-------------~~~~---s~~e-Qi~l~~~aDVlVGvHG-A 431 (550)
.-++++|.|+.. +. .-+..+|.+.|..|.+.+- .... +.+. -.+.+++|||+|..=| +
T Consensus 62 GK~vvVIGrS~i---VG-kPla~lL~~~~AtVti~~~~~~~~~~~~~~~~hs~t~~~~~~~~l~~~~~~ADIVIsAvG~~ 137 (197)
T cd01079 62 GKTITIINRSEV---VG-RPLAALLANDGARVYSVDINGIQVFTRGESIRHEKHHVTDEEAMTLDCLSQSDVVITGVPSP 137 (197)
T ss_pred CCEEEEECCCcc---ch-HHHHHHHHHCCCEEEEEecCcccccccccccccccccccchhhHHHHHhhhCCEEEEccCCC
Confidence 457899998863 11 1366777788999988831 0111 2222 2356899999988776 4
Q ss_pred hh-hhhhccCCCcEEEEE
Q 008862 432 AM-THFLFMKPGSVFIQV 448 (550)
Q Consensus 432 GL-TN~lFmppga~VIEI 448 (550)
++ ...=|.+||++||-+
T Consensus 138 ~~~i~~d~ik~GavVIDV 155 (197)
T cd01079 138 NYKVPTELLKDGAICINF 155 (197)
T ss_pred CCccCHHHcCCCcEEEEc
Confidence 44 577789999999987
No 49
>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=39.60 E-value=90 Score=32.90 Aligned_cols=71 Identities=14% Similarity=0.305 Sum_probs=50.1
Q ss_pred CCEEEEEEcCCCccccCHHHHHHHHHHc----CCEEEEEecCCCCCHHHHHHHHhcCCeEEeech-hhhhhhhccCCCcE
Q 008862 370 KPKLVILSRNGSRAITNENSLVKMAEDI----GFQVQVVRPDRTSELAKIYRALNSSDVMVGVHG-AAMTHFLFMKPGSV 444 (550)
Q Consensus 370 rprlviIsR~~sR~IlNe~evv~~l~~~----Gf~V~v~e~~~~~s~~eQi~l~~~aDVlVGvHG-AGLTN~lFmppga~ 444 (550)
.-++++|.|+.. +- .=+..+|.+. +..|.+... .+.++++ .+++|||+|..=| +++...=|.+||++
T Consensus 153 Gk~vvViGrS~i---VG-kPla~lL~~~~~~~~AtVtvchs-~T~~l~~---~~~~ADIvV~AvG~p~~i~~~~ik~Gav 224 (287)
T PRK14181 153 GRHVAIVGRSNI---VG-KPLAALLMQKHPDTNATVTLLHS-QSENLTE---ILKTADIIIAAIGVPLFIKEEMIAEKAV 224 (287)
T ss_pred CCEEEEECCCcc---ch-HHHHHHHHhCcCCCCCEEEEeCC-CCCCHHH---HHhhCCEEEEccCCcCccCHHHcCCCCE
Confidence 346889998863 11 1255666666 778887753 2344443 4799999988766 56777778999999
Q ss_pred EEEE
Q 008862 445 FIQV 448 (550)
Q Consensus 445 VIEI 448 (550)
||-+
T Consensus 225 VIDv 228 (287)
T PRK14181 225 IVDV 228 (287)
T ss_pred EEEe
Confidence 9987
No 50
>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=38.42 E-value=94 Score=32.85 Aligned_cols=69 Identities=19% Similarity=0.356 Sum_probs=46.2
Q ss_pred CCEEEEEEcCCC--ccccCHHHHHHHHHH----cCCEEEEEecCCCCCHHHHHHHHhcCCeEEeechhh-hhhhhccCCC
Q 008862 370 KPKLVILSRNGS--RAITNENSLVKMAED----IGFQVQVVRPDRTSELAKIYRALNSSDVMVGVHGAA-MTHFLFMKPG 442 (550)
Q Consensus 370 rprlviIsR~~s--R~IlNe~evv~~l~~----~Gf~V~v~e~~~~~s~~eQi~l~~~aDVlVGvHGAG-LTN~lFmppg 442 (550)
.-++++|.|+.. |= +..+|.+ .|..|.+... .+.++ .+.+++|||+|+.=|-. +...=|.+||
T Consensus 159 Gk~vvViGrS~iVG~P------la~lL~~~~~~~~atVt~~hs-~t~~l---~~~~~~ADIvI~Avg~~~li~~~~vk~G 228 (295)
T PRK14174 159 GKHCVVVGRSNIVGKP------MANLMLQKLKESNCTVTICHS-ATKDI---PSYTRQADILIAAIGKARFITADMVKPG 228 (295)
T ss_pred CCEEEEECCCCcchHH------HHHHHHhccccCCCEEEEEeC-CchhH---HHHHHhCCEEEEecCccCccCHHHcCCC
Confidence 347899999864 43 3334433 6888888753 23333 45589999999987644 3333356899
Q ss_pred cEEEEE
Q 008862 443 SVFIQV 448 (550)
Q Consensus 443 a~VIEI 448 (550)
++||-+
T Consensus 229 avVIDV 234 (295)
T PRK14174 229 AVVIDV 234 (295)
T ss_pred CEEEEe
Confidence 999987
No 51
>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)
Probab=38.27 E-value=97 Score=32.86 Aligned_cols=71 Identities=24% Similarity=0.360 Sum_probs=50.8
Q ss_pred CCEEEEEEcCCCccccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHhcCCeEEeech-hhhhhhhccCCCcEEEEE
Q 008862 370 KPKLVILSRNGSRAITNENSLVKMAEDIGFQVQVVRPDRTSELAKIYRALNSSDVMVGVHG-AAMTHFLFMKPGSVFIQV 448 (550)
Q Consensus 370 rprlviIsR~~sR~IlNe~evv~~l~~~Gf~V~v~e~~~~~s~~eQi~l~~~aDVlVGvHG-AGLTN~lFmppga~VIEI 448 (550)
.-++++|.|+.. +- .=+..+|.+.|..|.+... .+-+++ +..++|||+|..=| +++...=|.+||++||-+
T Consensus 167 Gk~vvVIGRS~i---VG-kPla~lL~~~~ATVtvchs-~T~nl~---~~~~~ADIvv~AvGk~~~i~~~~vk~gavVIDv 238 (299)
T PLN02516 167 GKKAVVVGRSNI---VG-LPVSLLLLKADATVTVVHS-RTPDPE---SIVREADIVIAAAGQAMMIKGDWIKPGAAVIDV 238 (299)
T ss_pred CCEEEEECCCcc---ch-HHHHHHHHHCCCEEEEeCC-CCCCHH---HHHhhCCEEEEcCCCcCccCHHHcCCCCEEEEe
Confidence 457899998863 11 1366677778999998863 334444 45799999887766 456666688999999987
No 52
>CHL00076 chlB photochlorophyllide reductase subunit B
Probab=37.65 E-value=1.3e+02 Score=34.18 Aligned_cols=101 Identities=14% Similarity=0.268 Sum_probs=72.3
Q ss_pred CCCCEEEEEEcC--CCccccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHhcCCeEEee-chhhhhhhhccCC--C
Q 008862 368 SKKPKLVILSRN--GSRAITNENSLVKMAEDIGFQVQVVRPDRTSELAKIYRALNSSDVMVGV-HGAAMTHFLFMKP--G 442 (550)
Q Consensus 368 ~~rprlviIsR~--~sR~IlNe~evv~~l~~~Gf~V~v~e~~~~~s~~eQi~l~~~aDVlVGv-HGAGLTN~lFmpp--g 442 (550)
..+++|=||.-. +.+.--|..||.+.|++.|.+|..+-+ ...+++| ++-+.+|++=|.+ +-.|+.-+=+|.. |
T Consensus 161 ~~~~~VNIIG~~~l~f~~~~Dl~eikrLL~~~Gi~vn~v~~-~g~sl~d-i~~~~~A~~NIvl~~~~g~~~A~~Le~~fg 238 (513)
T CHL00076 161 TDKPSVNIIGIFTLGFHNQHDCRELKRLLQDLGIEINQIIP-EGGSVED-LKNLPKAWFNIVPYREVGLMTAKYLEKEFG 238 (513)
T ss_pred CCCCcEEEEecCCCCCCCcchHHHHHHHHHHCCCeEEEEEC-CCCCHHH-HHhcccCcEEEEechhhhHHHHHHHHHHhC
Confidence 345677777655 335567889999999999999987655 3567755 5667888887766 3366655666665 5
Q ss_pred cEEEEEecCCCCcccccchHHHHhhcCCc
Q 008862 443 SVFIQVIPLGTDWAAETYYGEPARKLGLK 471 (550)
Q Consensus 443 a~VIEI~P~g~~~~~~~~Y~~~A~~~Gl~ 471 (550)
.-.+...|.|+. ....+-+.+|+.+|+.
T Consensus 239 iP~i~~~PiGi~-~T~~fLr~la~~lg~~ 266 (513)
T CHL00076 239 MPYISTTPMGIV-DTAECIRQIQKILNKL 266 (513)
T ss_pred CCeEeeccCCHH-HHHHHHHHHHHHhCCC
Confidence 666778899953 2456789999999964
No 53
>PF00389 2-Hacid_dh: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; InterPro: IPR006139 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. The catalytic domain contains a number of conserved charged residues which may play a role in the catalytic mechanism. The NAD-binding domain is described in IPR006140 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 2DLD_A 2G76_B 3DC2_B 1YGY_B 3DDN_A 3KB6_B 3K5P_A 3EVT_A 1WWK_B 1GDH_A ....
Probab=36.77 E-value=73 Score=28.61 Aligned_cols=77 Identities=19% Similarity=0.316 Sum_probs=55.6
Q ss_pred HHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHhcCCeEEeechhhhhhhhccC-CCcEEEEEecCCCCcccccchHHHHh
Q 008862 388 NSLVKMAEDIGFQVQVVRPDRTSELAKIYRALNSSDVMVGVHGAAMTHFLFMK-PGSVFIQVIPLGTDWAAETYYGEPAR 466 (550)
Q Consensus 388 ~evv~~l~~~Gf~V~v~e~~~~~s~~eQi~l~~~aDVlVGvHGAGLTN~lFmp-pga~VIEI~P~g~~~~~~~~Y~~~A~ 466 (550)
++.++.|++ |++|.+.+ ..+-++..+.+..+|++|+-++..++--++-. |+-.+|...--|++... -..|+
T Consensus 9 ~~~~~~l~~-~~~v~~~~---~~~~~~~~~~l~~~d~ii~~~~~~~~~~~l~~~~~Lk~I~~~~~G~d~id----~~~a~ 80 (133)
T PF00389_consen 9 DEEIERLEE-GFEVEFCD---SPSEEELAERLKDADAIIVGSGTPLTAEVLEAAPNLKLISTAGAGVDNID----LEAAK 80 (133)
T ss_dssp HHHHHHHHH-TSEEEEES---SSSHHHHHHHHTTESEEEESTTSTBSHHHHHHHTT-SEEEESSSSCTTB-----HHHHH
T ss_pred HHHHHHHHC-CceEEEeC---CCCHHHHHHHhCCCeEEEEcCCCCcCHHHHhccceeEEEEEcccccCccc----HHHHh
Confidence 567788888 88888775 57788889999999999987777566555533 78888888777754322 34566
Q ss_pred hcCCce
Q 008862 467 KLGLKY 472 (550)
Q Consensus 467 ~~Gl~Y 472 (550)
..|+..
T Consensus 81 ~~gI~V 86 (133)
T PF00389_consen 81 ERGIPV 86 (133)
T ss_dssp HTTSEE
T ss_pred hCeEEE
Confidence 778765
No 54
>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=36.37 E-value=1e+02 Score=32.54 Aligned_cols=71 Identities=20% Similarity=0.372 Sum_probs=51.7
Q ss_pred CCEEEEEEcCCCccccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHhcCCeEEeech-hhhhhhhccCCCcEEEEE
Q 008862 370 KPKLVILSRNGSRAITNENSLVKMAEDIGFQVQVVRPDRTSELAKIYRALNSSDVMVGVHG-AAMTHFLFMKPGSVFIQV 448 (550)
Q Consensus 370 rprlviIsR~~sR~IlNe~evv~~l~~~Gf~V~v~e~~~~~s~~eQi~l~~~aDVlVGvHG-AGLTN~lFmppga~VIEI 448 (550)
.-++++|.|+.. +- .-+..+|.+.|..|.+... .+-++. +..++|||+|..=| +++...=|.+||++||-+
T Consensus 160 Gk~vvViGrS~i---VG-kPla~lL~~~~aTVt~chs-~T~~l~---~~~~~ADIvVsAvGkp~~i~~~~ik~gaiVIDV 231 (294)
T PRK14187 160 GSDAVVIGRSNI---VG-KPMACLLLGENCTVTTVHS-ATRDLA---DYCSKADILVAAVGIPNFVKYSWIKKGAIVIDV 231 (294)
T ss_pred CCEEEEECCCcc---ch-HHHHHHHhhCCCEEEEeCC-CCCCHH---HHHhhCCEEEEccCCcCccCHHHcCCCCEEEEe
Confidence 346899998863 11 1366777778999988763 233443 46899999998777 566777788999999998
No 55
>PF11595 DUF3245: Protein of unknown function (DUF3245); InterPro: IPR021641 This is a family of proteins conserved in fungi. The function is not known, and there is no S. cerevisiae member.
Probab=36.16 E-value=17 Score=34.73 Aligned_cols=14 Identities=64% Similarity=0.969 Sum_probs=8.9
Q ss_pred CCCCCchHHHHhcc
Q 008862 30 DGDDDDDEESRAGA 43 (550)
Q Consensus 30 ~~~~~~~~~~~~~~ 43 (550)
++||||+||||+.+
T Consensus 125 ~~d~ddEeesRss~ 138 (149)
T PF11595_consen 125 DDDDDDEEESRSSL 138 (149)
T ss_pred ccccccchhhhHHH
Confidence 55666667888433
No 56
>TIGR02667 moaB_proteo molybdenum cofactor biosynthesis protein B, proteobacterial. This model represents the MoaB protein molybdopterin biosynthesis regions in Proteobacteria. This crystallized but incompletely characterized protein is thought to be involved in, though not required for, early steps in molybdopterin biosynthesis. It may bind a molybdopterin precursor. A distinctive conserved motif PCN near the C-terminus helps distinguish this clade from other homologs, including sets of proteins designated MogA.
Probab=35.77 E-value=1e+02 Score=29.32 Aligned_cols=72 Identities=15% Similarity=0.127 Sum_probs=45.3
Q ss_pred CCEEEEEEcCC---CccccCHHHHHHHHHHcCCEEEEEe--cCCCCCHHHHHHHH---hcCCeEEeechhhhhhhhccCC
Q 008862 370 KPKLVILSRNG---SRAITNENSLVKMAEDIGFQVQVVR--PDRTSELAKIYRAL---NSSDVMVGVHGAAMTHFLFMKP 441 (550)
Q Consensus 370 rprlviIsR~~---sR~IlNe~evv~~l~~~Gf~V~v~e--~~~~~s~~eQi~l~---~~aDVlVGvHGAGLTN~lFmpp 441 (550)
++|+.+|.=.. ...=.|-.-+.+.+++.|+++.... +++...+.+.++-. +.+|++|.-=|+|.+--=+.|+
T Consensus 4 ~~rv~vit~~d~~~~~~d~n~~~l~~~L~~~G~~v~~~~iv~Dd~~~i~~~l~~~~~~~~~DlVIttGGtg~g~~D~t~e 83 (163)
T TIGR02667 4 PLRIAILTVSDTRTEEDDTSGQYLVERLTEAGHRLADRAIVKDDIYQIRAQVSAWIADPDVQVILITGGTGFTGRDVTPE 83 (163)
T ss_pred ccEEEEEEEeCcCCccCCCcHHHHHHHHHHCCCeEEEEEEcCCCHHHHHHHHHHHHhcCCCCEEEECCCcCCCCCCCcHH
Confidence 45655553222 2223355667788999999887544 33334566666554 4699999998888775544443
No 57
>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=35.74 E-value=1.1e+02 Score=32.55 Aligned_cols=71 Identities=23% Similarity=0.449 Sum_probs=49.9
Q ss_pred CCEEEEEEcCCCccccCHHHHHHHHHHc----CCEEEEEecCCCCCHHHHHHHHhcCCeEEeech-hhhhhhhccCCCcE
Q 008862 370 KPKLVILSRNGSRAITNENSLVKMAEDI----GFQVQVVRPDRTSELAKIYRALNSSDVMVGVHG-AAMTHFLFMKPGSV 444 (550)
Q Consensus 370 rprlviIsR~~sR~IlNe~evv~~l~~~----Gf~V~v~e~~~~~s~~eQi~l~~~aDVlVGvHG-AGLTN~lFmppga~ 444 (550)
.-++++|.|+.. +-- -+..+|.+. +..|.+... .+.+++ +.+++|||+|..=| +++...=|.+||++
T Consensus 161 Gk~vvViGrS~i---VGk-Pla~lL~~~~~~~~atVtv~hs-~T~~l~---~~~~~ADIvVsAvGkp~~i~~~~ik~gav 232 (297)
T PRK14168 161 GAEVVVVGRSNI---VGK-PIANMMTQKGPGANATVTIVHT-RSKNLA---RHCQRADILIVAAGVPNLVKPEWIKPGAT 232 (297)
T ss_pred CCEEEEECCCCc---ccH-HHHHHHHhcccCCCCEEEEecC-CCcCHH---HHHhhCCEEEEecCCcCccCHHHcCCCCE
Confidence 457899999864 111 255566655 677877643 333444 45799999997655 67888889999999
Q ss_pred EEEE
Q 008862 445 FIQV 448 (550)
Q Consensus 445 VIEI 448 (550)
||-+
T Consensus 233 VIDv 236 (297)
T PRK14168 233 VIDV 236 (297)
T ss_pred EEec
Confidence 9987
No 58
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=34.85 E-value=1.2e+02 Score=32.10 Aligned_cols=71 Identities=20% Similarity=0.251 Sum_probs=50.6
Q ss_pred CCEEEEEEcCCCccccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHhcCCeEEeech-hhhhhhhccCCCcEEEEE
Q 008862 370 KPKLVILSRNGSRAITNENSLVKMAEDIGFQVQVVRPDRTSELAKIYRALNSSDVMVGVHG-AAMTHFLFMKPGSVFIQV 448 (550)
Q Consensus 370 rprlviIsR~~sR~IlNe~evv~~l~~~Gf~V~v~e~~~~~s~~eQi~l~~~aDVlVGvHG-AGLTN~lFmppga~VIEI 448 (550)
.-++++|.|++. + -.-+..+|.+.|..|.+... .+-++ .+..++|||+|..=| +++...=|.+||++||.+
T Consensus 164 Gk~vvViGrs~i---V-GkPla~lL~~~~atVtv~hs-~T~~l---~~~~~~ADIvv~AvG~p~~i~~~~vk~gavVIDv 235 (287)
T PRK14176 164 GKNAVIVGHSNV---V-GKPMAAMLLNRNATVSVCHV-FTDDL---KKYTLDADILVVATGVKHLIKADMVKEGAVIFDV 235 (287)
T ss_pred CCEEEEECCCcc---c-HHHHHHHHHHCCCEEEEEec-cCCCH---HHHHhhCCEEEEccCCccccCHHHcCCCcEEEEe
Confidence 457889988763 1 12367778888999988763 23334 446899999986433 566677789999999998
No 59
>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=34.68 E-value=1e+02 Score=32.57 Aligned_cols=71 Identities=20% Similarity=0.349 Sum_probs=49.7
Q ss_pred CCEEEEEEcCCCccccCHHHHHHHHHHc----CCEEEEEecCCCCCHHHHHHHHhcCCeEEeech-hhhhhhhccCCCcE
Q 008862 370 KPKLVILSRNGSRAITNENSLVKMAEDI----GFQVQVVRPDRTSELAKIYRALNSSDVMVGVHG-AAMTHFLFMKPGSV 444 (550)
Q Consensus 370 rprlviIsR~~sR~IlNe~evv~~l~~~----Gf~V~v~e~~~~~s~~eQi~l~~~aDVlVGvHG-AGLTN~lFmppga~ 444 (550)
.-++++|.|+.. +-- =+..+|.+. +..|.+... .+-+++ +..++|||+|+.=| +++-..=|.+||++
T Consensus 157 Gk~vvViGrS~i---VGk-Pla~lL~~~~~~~~aTVtvchs-~T~~l~---~~~~~ADIvIsAvGkp~~i~~~~ik~gai 228 (297)
T PRK14167 157 GADVVVVGRSDI---VGK-PMANLLIQKADGGNATVTVCHS-RTDDLA---AKTRRADIVVAAAGVPELIDGSMLSEGAT 228 (297)
T ss_pred CCEEEEECCCcc---cHH-HHHHHHhcCccCCCCEEEEeCC-CCCCHH---HHHhhCCEEEEccCCcCccCHHHcCCCCE
Confidence 346899999864 111 255555555 678887642 333443 46899999998766 67888888999999
Q ss_pred EEEE
Q 008862 445 FIQV 448 (550)
Q Consensus 445 VIEI 448 (550)
||-+
T Consensus 229 VIDv 232 (297)
T PRK14167 229 VIDV 232 (297)
T ss_pred EEEc
Confidence 9987
No 60
>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=34.62 E-value=1.2e+02 Score=32.02 Aligned_cols=71 Identities=20% Similarity=0.337 Sum_probs=49.9
Q ss_pred CCEEEEEEcCCCccccCHHHHHHHHHH--cCCEEEEEecCCCCCHHHHHHHHhcCCeEEeech-hhhhhhhccCCCcEEE
Q 008862 370 KPKLVILSRNGSRAITNENSLVKMAED--IGFQVQVVRPDRTSELAKIYRALNSSDVMVGVHG-AAMTHFLFMKPGSVFI 446 (550)
Q Consensus 370 rprlviIsR~~sR~IlNe~evv~~l~~--~Gf~V~v~e~~~~~s~~eQi~l~~~aDVlVGvHG-AGLTN~lFmppga~VI 446 (550)
.-++++|.|+.. +-- =+..+|.+ .|..|.+... .+.++. +.+++|||+|..=| +++-..=|.+||++||
T Consensus 158 Gk~vvViGrS~~---VGk-Pla~lL~~~~~~atVtvchs-~T~~l~---~~~k~ADIvV~AvGkp~~i~~~~ik~GavVI 229 (284)
T PRK14193 158 GAHVVVIGRGVT---VGR-PIGLLLTRRSENATVTLCHT-GTRDLA---AHTRRADIIVAAAGVAHLVTADMVKPGAAVL 229 (284)
T ss_pred CCEEEEECCCCc---chH-HHHHHHhhccCCCEEEEeCC-CCCCHH---HHHHhCCEEEEecCCcCccCHHHcCCCCEEE
Confidence 457899999864 111 25556655 6888888753 334444 45889999998777 4566667889999999
Q ss_pred EE
Q 008862 447 QV 448 (550)
Q Consensus 447 EI 448 (550)
-+
T Consensus 230 Dv 231 (284)
T PRK14193 230 DV 231 (284)
T ss_pred Ec
Confidence 87
No 61
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=34.15 E-value=71 Score=34.90 Aligned_cols=100 Identities=13% Similarity=0.200 Sum_probs=68.7
Q ss_pred CCCEEEEEEcCCCccccCHHHHHHHHHHcCCEEEEEecC-----------------CCCCHHHHHHHHhcCCeEEeech-
Q 008862 369 KKPKLVILSRNGSRAITNENSLVKMAEDIGFQVQVVRPD-----------------RTSELAKIYRALNSSDVMVGVHG- 430 (550)
Q Consensus 369 ~rprlviIsR~~sR~IlNe~evv~~l~~~Gf~V~v~e~~-----------------~~~s~~eQi~l~~~aDVlVGvHG- 430 (550)
.+.++-+|.-.. -.--|.+|+.+.|++.|.+++.+-+. ...++ |+++-+.+|.+-|.++-
T Consensus 154 ~~~~VNlig~~~-~~~~d~~el~~lL~~~Gl~v~~~~~~s~~~d~~~~~~~~~~~~gg~~~-e~i~~~~~A~lniv~~~~ 231 (428)
T cd01965 154 KNGKVNLLPGFP-LTPGDVREIKRILEAFGLEPIILPDLSDSLDGHLTDGYSPLTKGGTTL-EEIRDAGNAKATIALGEY 231 (428)
T ss_pred CCCeEEEECCCC-CCccCHHHHHHHHHHcCCCEEEecCcccccCCCCCCCccccCCCCCcH-HHHHHhccCcEEEEEChh
Confidence 345666674322 11228899999999999999876421 23555 45677888888888877
Q ss_pred hhhhhhhccCC--CcEEEEEe-cCCCCcccccchHHHHhhcCCc
Q 008862 431 AAMTHFLFMKP--GSVFIQVI-PLGTDWAAETYYGEPARKLGLK 471 (550)
Q Consensus 431 AGLTN~lFmpp--ga~VIEI~-P~g~~~~~~~~Y~~~A~~~Gl~ 471 (550)
+|..-+-+|.. |.-.+..- |+|++ ....+++.+|+..|..
T Consensus 232 ~~~~~a~~L~e~~GiP~~~~~~p~G~~-~t~~~l~~l~~~~g~~ 274 (428)
T cd01965 232 SGRKAAKALEEKFGVPYILFPTPIGLK-ATDEFLRALSKLSGKP 274 (428)
T ss_pred hhHHHHHHHHHHHCCCeeecCCCcChH-HHHHHHHHHHHHHCCC
Confidence 77666666654 66667765 88854 2456889999988865
No 62
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=33.72 E-value=1.8e+02 Score=30.08 Aligned_cols=93 Identities=16% Similarity=0.123 Sum_probs=55.8
Q ss_pred EEEEEEcCCCccccCHHHHHHHHHHcCCE--EEEEecCCCCCHHHHHHHHhcCCeEEeechhhhhh---------hhccC
Q 008862 372 KLVILSRNGSRAITNENSLVKMAEDIGFQ--VQVVRPDRTSELAKIYRALNSSDVMVGVHGAAMTH---------FLFMK 440 (550)
Q Consensus 372 rlviIsR~~sR~IlNe~evv~~l~~~Gf~--V~v~e~~~~~s~~eQi~l~~~aDVlVGvHGAGLTN---------~lFmp 440 (550)
+|++++|+.. .....+++.+.+.+.+.. +...+. .+..+.-+.+..+|++|----.|+.. .-+++
T Consensus 152 ~V~I~~R~~~-~~~~a~~l~~~l~~~~~~~~~~~~d~---~~~~~~~~~~~~~DilINaTp~Gm~~~~~~~~~~~~~~l~ 227 (289)
T PRK12548 152 EITIFNIKDD-FYERAEQTAEKIKQEVPECIVNVYDL---NDTEKLKAEIASSDILVNATLVGMKPNDGETNIKDTSVFR 227 (289)
T ss_pred EEEEEeCCch-HHHHHHHHHHHHhhcCCCceeEEech---hhhhHHHhhhccCCEEEEeCCCCCCCCCCCCCCCcHHhcC
Confidence 4888888641 011234566656554333 222221 12222334667889999777777643 22578
Q ss_pred CCcEEEEEecCCCCcccccchHHHHhhcCCce
Q 008862 441 PGSVFIQVIPLGTDWAAETYYGEPARKLGLKY 472 (550)
Q Consensus 441 pga~VIEI~P~g~~~~~~~~Y~~~A~~~Gl~Y 472 (550)
++.+|++++=.. .++.+-..|+..|.+.
T Consensus 228 ~~~~v~D~vY~P----~~T~ll~~A~~~G~~~ 255 (289)
T PRK12548 228 KDLVVADTVYNP----KKTKLLEDAEAAGCKT 255 (289)
T ss_pred CCCEEEEecCCC----CCCHHHHHHHHCCCee
Confidence 889999996321 3467889999999875
No 63
>cd01976 Nitrogenase_MoFe_alpha Nitrogenase_MoFe_alpha_II: Nitrogenase MoFe protein, beta subunit. A group of proteins similar to the alpha subunit of the MoFe protein of the molybdenum (Mo-) nitrogenase. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Mo-nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=32.90 E-value=70 Score=35.08 Aligned_cols=97 Identities=9% Similarity=0.054 Sum_probs=64.4
Q ss_pred CCEEEEEEcCCCccccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHhcCCeEEeec--hhh-hhhhhccCCCcEEE
Q 008862 370 KPKLVILSRNGSRAITNENSLVKMAEDIGFQVQVVRPDRTSELAKIYRALNSSDVMVGVH--GAA-MTHFLFMKPGSVFI 446 (550)
Q Consensus 370 rprlviIsR~~sR~IlNe~evv~~l~~~Gf~V~v~e~~~~~s~~eQi~l~~~aDVlVGvH--GAG-LTN~lFmppga~VI 446 (550)
...|-||.= ...--|..|+.+.|++.|.+|...-+ ...+++| ++-+.+|.+-|.+. +++ ++..|==+=|.-.+
T Consensus 172 ~~~VNiiG~--~~~~~d~~el~~lL~~~Gi~v~~~~~-~~~t~ee-i~~~~~A~lniv~~~~~~~~~a~~Le~~fGiP~~ 247 (421)
T cd01976 172 PYDVNIIGD--YNIGGDAWASRILLEEMGLRVVAQWS-GDGTLNE-MENAHKAKLNLIHCYRSMNYIARMMEEKYGIPWM 247 (421)
T ss_pred CCeEEEEec--CCCCccHHHHHHHHHHcCCeEEEEeC-CCCCHHH-HHhcccCCEEEEECcHHHHHHHHHHHHHhCCcEE
Confidence 455666642 22335778999999999999985433 4567755 56677777766653 332 34444333467777
Q ss_pred EEecCCCCcccccchHHHHhhcCCc
Q 008862 447 QVIPLGTDWAAETYYGEPARKLGLK 471 (550)
Q Consensus 447 EI~P~g~~~~~~~~Y~~~A~~~Gl~ 471 (550)
+..|+|++ ....|++.+|+..|..
T Consensus 248 ~~~p~Gi~-~t~~~l~~ia~~~g~~ 271 (421)
T cd01976 248 EYNFFGPT-KIAESLRKIAAYFDDE 271 (421)
T ss_pred ecccCCHH-HHHHHHHHHHHHhCch
Confidence 77788864 2467899999999864
No 64
>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=32.59 E-value=1.2e+02 Score=31.96 Aligned_cols=70 Identities=21% Similarity=0.309 Sum_probs=47.5
Q ss_pred CEEEEEEcCCCccccCHHHHHHHHHH----cCCEEEEEecCCCCCHHHHHHHHhcCCeEEeechh-hhhhhhccCCCcEE
Q 008862 371 PKLVILSRNGSRAITNENSLVKMAED----IGFQVQVVRPDRTSELAKIYRALNSSDVMVGVHGA-AMTHFLFMKPGSVF 445 (550)
Q Consensus 371 prlviIsR~~sR~IlNe~evv~~l~~----~Gf~V~v~e~~~~~s~~eQi~l~~~aDVlVGvHGA-GLTN~lFmppga~V 445 (550)
-++++|.|+.. +- .=+..+|.+ .|..|.+.... +. ...+.+++|||+|+.=|. ++--.=|.+||++|
T Consensus 158 k~vvViGrS~i---VG-~Pla~lL~~~~~~~~AtVt~~hs~-t~---~l~~~~~~ADIVI~AvG~p~li~~~~vk~GavV 229 (286)
T PRK14184 158 KKAVVVGRSNI---VG-KPLALMLGAPGKFANATVTVCHSR-TP---DLAEECREADFLFVAIGRPRFVTADMVKPGAVV 229 (286)
T ss_pred CEEEEECCCcc---ch-HHHHHHHhCCcccCCCEEEEEeCC-ch---hHHHHHHhCCEEEEecCCCCcCCHHHcCCCCEE
Confidence 47899988863 11 135666766 67788877532 22 334568999999988765 34344466999999
Q ss_pred EEE
Q 008862 446 IQV 448 (550)
Q Consensus 446 IEI 448 (550)
|-+
T Consensus 230 IDV 232 (286)
T PRK14184 230 VDV 232 (286)
T ss_pred EEe
Confidence 988
No 65
>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=32.12 E-value=1.3e+02 Score=31.74 Aligned_cols=70 Identities=23% Similarity=0.379 Sum_probs=49.6
Q ss_pred CEEEEEEcCCCccccCHHHHHHHHHHc----CCEEEEEecCCCCCHHHHHHHHhcCCeEEeech-hhhhhhhccCCCcEE
Q 008862 371 PKLVILSRNGSRAITNENSLVKMAEDI----GFQVQVVRPDRTSELAKIYRALNSSDVMVGVHG-AAMTHFLFMKPGSVF 445 (550)
Q Consensus 371 prlviIsR~~sR~IlNe~evv~~l~~~----Gf~V~v~e~~~~~s~~eQi~l~~~aDVlVGvHG-AGLTN~lFmppga~V 445 (550)
-++++|.|+.. +- .=+..+|.+. +..|.+... .+.++.+ ..++|||+|..-| +++...=|.+||++|
T Consensus 158 K~vvViGrS~i---VG-kPla~lL~~~~~~~~aTVtvchs-~T~nl~~---~~~~ADIvIsAvGkp~~i~~~~vk~gavV 229 (293)
T PRK14185 158 KKCVVLGRSNI---VG-KPMAQLMMQKAYPGDCTVTVCHS-RSKNLKK---ECLEADIIIAALGQPEFVKADMVKEGAVV 229 (293)
T ss_pred CEEEEECCCcc---ch-HHHHHHHHcCCCCCCCEEEEecC-CCCCHHH---HHhhCCEEEEccCCcCccCHHHcCCCCEE
Confidence 47889998863 11 1256666665 578887753 3445544 5789999998776 567777789999999
Q ss_pred EEE
Q 008862 446 IQV 448 (550)
Q Consensus 446 IEI 448 (550)
|-+
T Consensus 230 IDv 232 (293)
T PRK14185 230 IDV 232 (293)
T ss_pred EEe
Confidence 987
No 66
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=31.57 E-value=1.8e+02 Score=27.06 Aligned_cols=54 Identities=17% Similarity=0.167 Sum_probs=40.8
Q ss_pred CCCEEEEEEcCCCccccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHhcCCe
Q 008862 369 KKPKLVILSRNGSRAITNENSLVKMAEDIGFQVQVVRPDRTSELAKIYRALNSSDV 424 (550)
Q Consensus 369 ~rprlviIsR~~sR~IlNe~evv~~l~~~Gf~V~v~e~~~~~s~~eQi~l~~~aDV 424 (550)
++|++++..=.+-..-+...-+..+++..||+|+.+- .+.+.++.++.+.+.++
T Consensus 2 ~~~~vl~~~~~gD~H~lG~~iv~~~lr~~G~eVi~LG--~~vp~e~i~~~a~~~~~ 55 (137)
T PRK02261 2 KKKTVVLGVIGADCHAVGNKILDRALTEAGFEVINLG--VMTSQEEFIDAAIETDA 55 (137)
T ss_pred CCCEEEEEeCCCChhHHHHHHHHHHHHHCCCEEEECC--CCCCHHHHHHHHHHcCC
Confidence 3677777766665666666667788899999999775 46899999999876554
No 67
>cd03129 GAT1_Peptidase_E_like Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E and, extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Peptidase E and cyanophycinases are thought to have a Ser-His-Glu catalytic triad which differs from
Probab=30.81 E-value=1.6e+02 Score=28.69 Aligned_cols=64 Identities=11% Similarity=0.067 Sum_probs=43.9
Q ss_pred CCCEEEEEEcCCCccccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHhcCCeEEeechhh
Q 008862 369 KKPKLVILSRNGSRAITNENSLVKMAEDIGFQVQVVRPDRTSELAKIYRALNSSDVMVGVHGAA 432 (550)
Q Consensus 369 ~rprlviIsR~~sR~IlNe~evv~~l~~~Gf~V~v~e~~~~~s~~eQi~l~~~aDVlVGvHGAG 432 (550)
..+++++|.-...-.=-..++..++++++|++++.+......+-.+..+.+.+||+++=.=|.-
T Consensus 28 ~~~~i~~iptA~~~~~~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~l~~ad~I~~~GG~~ 91 (210)
T cd03129 28 AGARVLFIPTASGDRDEYGEEYRAAFERLGVEVVHLLLIDTANDPDVVARLLEADGIFVGGGNQ 91 (210)
T ss_pred CCCeEEEEeCCCCChHHHHHHHHHHHHHcCCceEEEeccCCCCCHHHHHHHhhCCEEEEcCCcH
Confidence 5788999976653111233568888899999887665322245678889999999987544544
No 68
>cd01968 Nitrogenase_NifE_I Nitrogenase_NifE_I: a subgroup of the NifE subunit of the NifEN complex: NifE forms an alpha2beta2 tetramer with NifN. NifE and NifN are structurally homologous to nitrogenase MoFe protein alpha and beta subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The NifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this NifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=30.06 E-value=90 Score=33.88 Aligned_cols=97 Identities=16% Similarity=0.117 Sum_probs=62.4
Q ss_pred CCEEEEEEcCCCccccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHhcCCeEEee-chhhhhhhhcc--CCCcEEE
Q 008862 370 KPKLVILSRNGSRAITNENSLVKMAEDIGFQVQVVRPDRTSELAKIYRALNSSDVMVGV-HGAAMTHFLFM--KPGSVFI 446 (550)
Q Consensus 370 rprlviIsR~~sR~IlNe~evv~~l~~~Gf~V~v~e~~~~~s~~eQi~l~~~aDVlVGv-HGAGLTN~lFm--ppga~VI 446 (550)
+..|-||.- ....-|.+|+.+.|++.|.+|+.+-+ ...+++|. +-+.+|.+-|.+ +..|.-=+=+| +=|.-.+
T Consensus 158 ~~~VNiig~--~~~~~d~~el~~lL~~~Gl~v~~~~~-~~~s~eei-~~~~~A~lniv~~~~~~~~~a~~L~~~fGip~~ 233 (410)
T cd01968 158 PYDINLIGE--FNVAGELWGVKPLLEKLGIRVLASIT-GDSRVDEI-RRAHRAKLNVVQCSKSMIYLARKMEEKYGIPYI 233 (410)
T ss_pred CCcEEEECC--CCCcccHHHHHHHHHHcCCeEEEEeC-CCCCHHHH-HhhhhCcEEEEEchhHHHHHHHHHHHHhCCCeE
Confidence 344556652 23345778999999999999986533 45678664 556666665544 22332223334 3366666
Q ss_pred EEecCCCCcccccchHHHHhhcCCc
Q 008862 447 QVIPLGTDWAAETYYGEPARKLGLK 471 (550)
Q Consensus 447 EI~P~g~~~~~~~~Y~~~A~~~Gl~ 471 (550)
...|+|++. ...+++.+|+.+|..
T Consensus 234 ~~~p~G~~~-t~~~l~~ia~~~g~~ 257 (410)
T cd01968 234 EVSFYGIRD-TSKSLRNIAELLGDE 257 (410)
T ss_pred ecCcCcHHH-HHHHHHHHHHHhCCc
Confidence 777888643 467899999999964
No 69
>PRK13337 putative lipid kinase; Reviewed
Probab=28.76 E-value=4.1e+02 Score=27.45 Aligned_cols=69 Identities=14% Similarity=0.229 Sum_probs=45.8
Q ss_pred cCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHH--hcCCeEEeechhhhhhh----hccCCCcEEEEEecCCC
Q 008862 385 TNENSLVKMAEDIGFQVQVVRPDRTSELAKIYRAL--NSSDVMVGVHGAAMTHF----LFMKPGSVFIQVIPLGT 453 (550)
Q Consensus 385 lNe~evv~~l~~~Gf~V~v~e~~~~~s~~eQi~l~--~~aDVlVGvHGAGLTN~----lFmppga~VIEI~P~g~ 453 (550)
...+++.+.+++.|+++.+..........+.++.. ...|++|.+=|=|..|. +.-.+....|=|+|.|.
T Consensus 19 ~~~~~~~~~l~~~~~~~~~~~t~~~~~a~~~a~~~~~~~~d~vvv~GGDGTl~~vv~gl~~~~~~~~lgiiP~GT 93 (304)
T PRK13337 19 KNLPDVLQKLEQAGYETSAHATTGPGDATLAAERAVERKFDLVIAAGGDGTLNEVVNGIAEKENRPKLGIIPVGT 93 (304)
T ss_pred HHHHHHHHHHHHcCCEEEEEEecCCCCHHHHHHHHHhcCCCEEEEEcCCCHHHHHHHHHhhCCCCCcEEEECCcC
Confidence 34567888999999987765543345566666544 45789998888776544 33222234678899983
No 70
>PLN02928 oxidoreductase family protein
Probab=28.42 E-value=6.8e+02 Score=26.78 Aligned_cols=136 Identities=16% Similarity=0.163 Sum_probs=0.0
Q ss_pred HHHHHHHHcCCEEEEEecCCC---------------------CCHHHHHHHHhcCCeEEee--------chhhhhhhhcc
Q 008862 389 SLVKMAEDIGFQVQVVRPDRT---------------------SELAKIYRALNSSDVMVGV--------HGAAMTHFLFM 439 (550)
Q Consensus 389 evv~~l~~~Gf~V~v~e~~~~---------------------~s~~eQi~l~~~aDVlVGv--------HGAGLTN~lFm 439 (550)
++++.++.+|++|...+.... ....+.-+++.+|||++-. |=-+-..+--|
T Consensus 173 ~vA~~l~afG~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ell~~aDiVvl~lPlt~~T~~li~~~~l~~M 252 (347)
T PLN02928 173 ELAKRLRPFGVKLLATRRSWTSEPEDGLLIPNGDVDDLVDEKGGHEDIYEFAGEADIVVLCCTLTKETAGIVNDEFLSSM 252 (347)
T ss_pred HHHHHHhhCCCEEEEECCCCChhhhhhhccccccccccccccCcccCHHHHHhhCCEEEECCCCChHhhcccCHHHHhcC
Q ss_pred CCCcEEEEEecCCCCcccccchHHHHhhcCCceEEEEecCCCCcccccCCCCCCccCCCCcc---cccCcceeeeeecCC
Q 008862 440 KPGSVFIQVIPLGTDWAAETYYGEPARKLGLKYIGYTILPRESSLYDQYDKNDPVLRDPSSV---NEKGWQYTKTIYLDG 516 (550)
Q Consensus 440 ppga~VIEI~P~g~~~~~~~~Y~~~A~~~Gl~Y~~y~i~~eEssL~~~y~~dh~v~~dP~~i---~~kgW~~~~~~yL~~ 516 (550)
+||+++|-+---++ ..+.---+.-+.=.+....-.+...|. .+.+||.+..|..+ |..|+..
T Consensus 253 k~ga~lINvaRG~l--Vde~AL~~AL~~g~i~gAaLDV~~~EP-----~~~~~pL~~~~nviiTPHia~~t~-------- 317 (347)
T PLN02928 253 KKGALLVNIARGGL--LDYDAVLAALESGHLGGLAIDVAWSEP-----FDPDDPILKHPNVIITPHVAGVTE-------- 317 (347)
T ss_pred CCCeEEEECCCccc--cCHHHHHHHHHcCCeeEEEEccCCCCC-----CCCCChhhcCCCEEECCcCCCChH--------
Q ss_pred ccEEEehHHHHHHHHHHHHHHHhhcccccc
Q 008862 517 QNVRLNLRRFQKRLVRAYDYSINRISQNCH 546 (550)
Q Consensus 517 QnV~lDi~rF~~~L~~A~~~l~~~~~~~~~ 546 (550)
+.+..+...+.+.+.++.....+
T Consensus 318 -------~~~~~~~~~~~~nl~~~~~g~~~ 340 (347)
T PLN02928 318 -------YSYRSMGKIVGDAALQLHAGRPL 340 (347)
T ss_pred -------HHHHHHHHHHHHHHHHHHCCCCC
No 71
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=27.57 E-value=2.5e+02 Score=26.79 Aligned_cols=60 Identities=20% Similarity=0.326 Sum_probs=36.1
Q ss_pred CCCCEEEEEEcCC---CccccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHhcCCe-EEeechhh
Q 008862 368 SKKPKLVILSRNG---SRAITNENSLVKMAEDIGFQVQVVRPDRTSELAKIYRALNSSDV-MVGVHGAA 432 (550)
Q Consensus 368 ~~rprlviIsR~~---sR~IlNe~evv~~l~~~Gf~V~v~e~~~~~s~~eQi~l~~~aDV-lVGvHGAG 432 (550)
.+|||+++..=.- .|.. .-+..+++..||+|+..- -..+-.|.++..-..|+ +||+-+-.
T Consensus 10 g~rprvlvak~GlDgHd~ga---kvia~~l~d~GfeVi~~g--~~~tp~e~v~aA~~~dv~vIgvSsl~ 73 (143)
T COG2185 10 GARPRVLVAKLGLDGHDRGA---KVIARALADAGFEVINLG--LFQTPEEAVRAAVEEDVDVIGVSSLD 73 (143)
T ss_pred CCCceEEEeccCccccccch---HHHHHHHHhCCceEEecC--CcCCHHHHHHHHHhcCCCEEEEEecc
Confidence 4799988763321 2442 235588899999998754 34566777776634443 34444433
No 72
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=27.49 E-value=96 Score=29.87 Aligned_cols=53 Identities=17% Similarity=0.396 Sum_probs=42.0
Q ss_pred HHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHh-cCCeEEeechhh---hhhhhccC
Q 008862 388 NSLVKMAEDIGFQVQVVRPDRTSELAKIYRALN-SSDVMVGVHGAA---MTHFLFMK 440 (550)
Q Consensus 388 ~evv~~l~~~Gf~V~v~e~~~~~s~~eQi~l~~-~aDVlVGvHGAG---LTN~lFmp 440 (550)
+++++..+++|++|..+.......+.+....+. .+-|++|.=|+| |.|.|.-.
T Consensus 2 ~~~~~~y~~~gy~v~~~S~~~~~g~~~l~~~l~~k~~vl~G~SGvGKSSLiN~L~~~ 58 (161)
T PF03193_consen 2 EELLEQYEKLGYPVFFISAKTGEGIEELKELLKGKTSVLLGQSGVGKSSLINALLPE 58 (161)
T ss_dssp HHHHHHHHHTTSEEEE-BTTTTTTHHHHHHHHTTSEEEEECSTTSSHHHHHHHHHTS
T ss_pred HHHHHHHHHcCCcEEEEeCCCCcCHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhh
Confidence 578889999999999988655677888777774 677799999998 77877654
No 73
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=26.94 E-value=72 Score=34.09 Aligned_cols=44 Identities=16% Similarity=0.237 Sum_probs=27.1
Q ss_pred HHHHHHHHHcCCEEEEEecC-CCCCHHHHHHHHhcCCeEEeechhh
Q 008862 388 NSLVKMAEDIGFQVQVVRPD-RTSELAKIYRALNSSDVMVGVHGAA 432 (550)
Q Consensus 388 ~evv~~l~~~Gf~V~v~e~~-~~~s~~eQi~l~~~aDVlVGvHGAG 432 (550)
.+++++|+..||+++++|.- ...+=. .+.-+..+-++|-+.|+|
T Consensus 133 ~~~i~~ldAaG~DvIIVETVGvGQsev-~I~~~aDt~~~v~~pg~G 177 (323)
T COG1703 133 REAIKLLDAAGYDVIIVETVGVGQSEV-DIANMADTFLVVMIPGAG 177 (323)
T ss_pred HHHHHHHHhcCCCEEEEEecCCCcchh-HHhhhcceEEEEecCCCC
Confidence 37899999999999999852 112221 123334444556666665
No 74
>KOG4698 consensus Uncharacterized conserved protein [Function unknown]
Probab=26.90 E-value=13 Score=41.39 Aligned_cols=100 Identities=11% Similarity=0.091 Sum_probs=70.5
Q ss_pred ccccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHhcCCeEEeechhhhhhhhccCCCcEEEEEecCCCCcccccch
Q 008862 382 RAITNENSLVKMAEDIGFQVQVVRPDRTSELAKIYRALNSSDVMVGVHGAAMTHFLFMKPGSVFIQVIPLGTDWAAETYY 461 (550)
Q Consensus 382 R~IlNe~evv~~l~~~Gf~V~v~e~~~~~s~~eQi~l~~~aDVlVGvHGAGLTN~lFmppga~VIEI~P~g~~~~~~~~Y 461 (550)
+.++|+.+ +...++.-|-++...+-..+.+.+.++.+++.. +-+|+++..--.|.+.+..|++-+|++.+.....+|
T Consensus 192 pL~it~~~-~~~n~ev~~li~~~~~ww~~kf~Dvv~~lSn~~--~v~~~~~~~ThcF~~~~vgL~~h~~y~v~~t~~~~~ 268 (475)
T KOG4698|consen 192 PLFITEAE-LRFNKEVQFLITETHSWWDMKFGDVVRQLSNYP--VVDFDAELRTHCFKEAIVGLVSHFPYAVNPTQPPPN 268 (475)
T ss_pred hhhcccch-hcccccEEEEEEEcchhhhhhHHHHHHhcCCCc--eEEecCCceEEEeeeeeeeeeecccccccCCcCCCc
Confidence 66777777 333333333222222225688999999999999 889999999999999999999999999877777778
Q ss_pred HH--HHhhcCCceEEEEecCCCCcc
Q 008862 462 GE--PARKLGLKYIGYTILPRESSL 484 (550)
Q Consensus 462 ~~--~A~~~Gl~Y~~y~i~~eEssL 484 (550)
+. +--.+.+-|.+|.....|..+
T Consensus 269 ~~~s~~~fr~~l~~a~~~~i~~~~~ 293 (475)
T KOG4698|consen 269 GTLSMLDFRNLLDKALSPRIPEANV 293 (475)
T ss_pred cccccccHHHHHHHHhccccccccc
Confidence 54 333566667777654434333
No 75
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=25.02 E-value=2.8e+02 Score=28.56 Aligned_cols=80 Identities=16% Similarity=0.225 Sum_probs=47.8
Q ss_pred CCEEEEEEcCC--Ccccc--CHHHHHHHHHHcCCEEEEE-ec-------------------CCCCCHHHHHHHHhcCCeE
Q 008862 370 KPKLVILSRNG--SRAIT--NENSLVKMAEDIGFQVQVV-RP-------------------DRTSELAKIYRALNSSDVM 425 (550)
Q Consensus 370 rprlviIsR~~--sR~Il--Ne~evv~~l~~~Gf~V~v~-e~-------------------~~~~s~~eQi~l~~~aDVl 425 (550)
++.++++.-.. .|++- +-.||++.+.+.|+.+++. .. ...+++.|-+.+++.||++
T Consensus 178 ~~~i~~~~~~s~~~k~Wp~e~~a~li~~l~~~~~~ivl~~G~~~e~~~~~~i~~~~~~~~l~g~~sL~elaali~~a~l~ 257 (322)
T PRK10964 178 GPYLVFLHATTRDDKHWPEAHWRELIGLLAPSGLRIKLPWGAEHEEQRAKRLAEGFPYVEVLPKLSLEQVARVLAGAKAV 257 (322)
T ss_pred CCeEEEEeCCCcccccCCHHHHHHHHHHHHHCCCeEEEeCCCHHHHHHHHHHHccCCcceecCCCCHHHHHHHHHhCCEE
Confidence 45555443322 36665 3457777776668877664 11 1247899999999999999
Q ss_pred EeechhhhhhhhccCCCcEEEEEecC
Q 008862 426 VGVHGAAMTHFLFMKPGSVFIQVIPL 451 (550)
Q Consensus 426 VGvHGAGLTN~lFmppga~VIEI~P~ 451 (550)
||.=. |..|+--+= |+-+|-|+..
T Consensus 258 I~nDS-Gp~HlA~A~-g~p~valfGp 281 (322)
T PRK10964 258 VSVDT-GLSHLTAAL-DRPNITLYGP 281 (322)
T ss_pred EecCC-cHHHHHHHh-CCCEEEEECC
Confidence 99743 333332221 3455666644
No 76
>TIGR00177 molyb_syn molybdenum cofactor synthesis domain. The Drosophila protein cinnamon, the Arabidopsis protein cnx1, and rat protein gephyrin each have one domain like MoeA and one like MoaB and Mog. These domains are, however, distantly related to each other, as captured by this model. Gephyrin is unusual in that it seems to be a tubulin-binding neuroprotein involved in the clustering of both blycine receptors and GABA receptors, rather than a protein of molybdenum cofactor biosynthesis.
Probab=24.85 E-value=1.1e+02 Score=28.21 Aligned_cols=53 Identities=26% Similarity=0.435 Sum_probs=37.6
Q ss_pred cccCHHHHHHHHHHcCCEEEEEe--cCCCCCHHHHHHHH-hcCCeEEeechhhhhh
Q 008862 383 AITNENSLVKMAEDIGFQVQVVR--PDRTSELAKIYRAL-NSSDVMVGVHGAAMTH 435 (550)
Q Consensus 383 ~IlNe~evv~~l~~~Gf~V~v~e--~~~~~s~~eQi~l~-~~aDVlVGvHGAGLTN 435 (550)
.=.|..-+.+.+++.|+++.... ++....+.++++.. .++|++|..=|+|.+.
T Consensus 25 ~d~n~~~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~l~~~~~~~DliIttGG~g~g~ 80 (144)
T TIGR00177 25 YDSNGPLLAALLEEAGFNVSRLGIVPDDPEEIREILRKAVDEADVVLTTGGTGVGP 80 (144)
T ss_pred EeCcHHHHHHHHHHCCCeEEEEeecCCCHHHHHHHHHHHHhCCCEEEECCCCCCCC
Confidence 34566678899999999988654 23334566666644 6899999998887654
No 77
>PF14812 PBP1_TM: Transmembrane domain of transglycosylase PBP1 at N-terminal; PDB: 3FWL_A 3VMA_A.
Probab=24.78 E-value=11 Score=32.41 Aligned_cols=7 Identities=0% Similarity=-0.073 Sum_probs=0.0
Q ss_pred CCCcccc
Q 008862 60 SSSTTSR 66 (550)
Q Consensus 60 ~~~~~~~ 66 (550)
.++||+|
T Consensus 61 ~rkKrrw 67 (81)
T PF14812_consen 61 PRKKRRW 67 (81)
T ss_dssp -------
T ss_pred ccccchh
Confidence 4456666
No 78
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=24.29 E-value=2.4e+02 Score=26.04 Aligned_cols=68 Identities=22% Similarity=0.329 Sum_probs=40.1
Q ss_pred CCEEEEEEcCCCccccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHhcCCe-EEeechhhhhhhhcc
Q 008862 370 KPKLVILSRNGSRAITNENSLVKMAEDIGFQVQVVRPDRTSELAKIYRALNSSDV-MVGVHGAAMTHFLFM 439 (550)
Q Consensus 370 rprlviIsR~~sR~IlNe~evv~~l~~~Gf~V~v~e~~~~~s~~eQi~l~~~aDV-lVGvHGAGLTN~lFm 439 (550)
+||+++..=.+--.=.--+=+..+++..||+|+-.. ...+.++.++...+.++ +||+=+.-=+++-.|
T Consensus 2 ~~~v~~a~~g~D~Hd~g~~iv~~~l~~~GfeVi~lg--~~~s~e~~v~aa~e~~adii~iSsl~~~~~~~~ 70 (132)
T TIGR00640 2 RPRILVAKMGQDGHDRGAKVIATAYADLGFDVDVGP--LFQTPEEIARQAVEADVHVVGVSSLAGGHLTLV 70 (132)
T ss_pred CCEEEEEeeCCCccHHHHHHHHHHHHhCCcEEEECC--CCCCHHHHHHHHHHcCCCEEEEcCchhhhHHHH
Confidence 566665443331111111235578888999998664 45788888888877666 566654443444333
No 79
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=24.27 E-value=2.5e+02 Score=28.77 Aligned_cols=52 Identities=19% Similarity=0.306 Sum_probs=39.7
Q ss_pred HHHhcCCeEEeechhhhhh--------hhccCCCcEEEEEecCCCCcccccchHHHHhhcCCce
Q 008862 417 RALNSSDVMVGVHGAAMTH--------FLFMKPGSVFIQVIPLGTDWAAETYYGEPARKLGLKY 472 (550)
Q Consensus 417 ~l~~~aDVlVGvHGAGLTN--------~lFmppga~VIEI~P~g~~~~~~~~Y~~~A~~~Gl~Y 472 (550)
..+..+|++|..-.+|+-. .-++++++.|++++-.. ..+.+-..|+..|++.
T Consensus 181 ~~~~~~DivInaTp~g~~~~~~~~~~~~~~l~~~~~v~DivY~P----~~T~ll~~A~~~G~~~ 240 (278)
T PRK00258 181 EELADFDLIINATSAGMSGELPLPPLPLSLLRPGTIVYDMIYGP----LPTPFLAWAKAQGART 240 (278)
T ss_pred hccccCCEEEECCcCCCCCCCCCCCCCHHHcCCCCEEEEeecCC----CCCHHHHHHHHCcCee
Confidence 4557899999999999843 13468889999997432 3467888999999876
No 80
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=23.83 E-value=1.8e+02 Score=30.36 Aligned_cols=68 Identities=21% Similarity=0.380 Sum_probs=47.3
Q ss_pred EEEEEEcCCC--ccccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHhcCCeEEeech-hhhhhhhccCCCcEEEEE
Q 008862 372 KLVILSRNGS--RAITNENSLVKMAEDIGFQVQVVRPDRTSELAKIYRALNSSDVMVGVHG-AAMTHFLFMKPGSVFIQV 448 (550)
Q Consensus 372 rlviIsR~~s--R~IlNe~evv~~l~~~Gf~V~v~e~~~~~s~~eQi~l~~~aDVlVGvHG-AGLTN~lFmppga~VIEI 448 (550)
++++|.|.+. |- +..+|.+.|..|.+... ...++ .+.+.+|||+|..-| +++--.=+++||++||.+
T Consensus 161 ~vvViG~gg~vGkp------ia~~L~~~gatVtv~~~-~t~~L---~~~~~~aDIvI~AtG~~~~v~~~~lk~gavViDv 230 (283)
T PRK14192 161 HAVVVGRSAILGKP------MAMMLLNANATVTICHS-RTQNL---PELVKQADIIVGAVGKPELIKKDWIKQGAVVVDA 230 (283)
T ss_pred EEEEECCcHHHHHH------HHHHHHhCCCEEEEEeC-CchhH---HHHhccCCEEEEccCCCCcCCHHHcCCCCEEEEE
Confidence 6899999872 54 56777788888888763 23334 345689999999885 222223346789999988
Q ss_pred e
Q 008862 449 I 449 (550)
Q Consensus 449 ~ 449 (550)
.
T Consensus 231 g 231 (283)
T PRK14192 231 G 231 (283)
T ss_pred E
Confidence 4
No 81
>cd02410 archeal_CPSF_KH The archaeal cleavage and polyadenylation specificity factor (CPSF) contains an N-terminal K homology RNA-binding domain (KH). The archeal CPSFs are predicted to be metal-dependent RNases belonging to the beta-CASP family, a subgroup enzymes within the metallo-beta-lactamase fold. The KH motif is a beta-alpha-alpha-beta-beta unit that folds into an alpha-beta structure with a three stranded beta-sheet interupted by two contiguous helices. In general, KH domains are known to bind single-stranded RNA or DNA and are found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA.
Probab=23.22 E-value=1.4e+02 Score=28.50 Aligned_cols=78 Identities=21% Similarity=0.360 Sum_probs=53.7
Q ss_pred CCEEEEEEcCCCccccCHHHHH-HHHHHcCCEEEE-EecCCCCCHHHHHHHHhcCCeEEeechhhhhhhhccCC-CcEEE
Q 008862 370 KPKLVILSRNGSRAITNENSLV-KMAEDIGFQVQV-VRPDRTSELAKIYRALNSSDVMVGVHGAAMTHFLFMKP-GSVFI 446 (550)
Q Consensus 370 rprlviIsR~~sR~IlNe~evv-~~l~~~Gf~V~v-~e~~~~~s~~eQi~l~~~aDVlVGvHGAGLTN~lFmpp-ga~VI 446 (550)
.|.+++..|+- +.+.+.++++ +.++++-..+++ .++...++-++-.+.+.+ |-+-+||++|+.|=+. |-++|
T Consensus 8 GPelviYtk~P-~~~~~~~dli~~lAk~lrKRIvvR~dps~l~~~e~A~~~I~~----ivP~ea~i~di~Fd~~tGEV~I 82 (145)
T cd02410 8 GPELVVYTKNP-ELFAEDGDLVKDLAKDLRKRIVIRPDPSVLKPPEEAIKIILE----IVPEEAGITDIYFDDDTGEVII 82 (145)
T ss_pred CCeEEEEECCH-HHHhcccHHHHHHHHHHhceEEEcCChhhcCCHHHHHHHHHH----hCCCccCceeeEecCCCcEEEE
Confidence 58899988874 5666656666 555566666655 233233555665556554 4567899999999996 99999
Q ss_pred EEecCC
Q 008862 447 QVIPLG 452 (550)
Q Consensus 447 EI~P~g 452 (550)
|.-=+|
T Consensus 83 eaeKPG 88 (145)
T cd02410 83 EAEKPG 88 (145)
T ss_pred EEcCCe
Confidence 997554
No 82
>COG1920 Predicted nucleotidyltransferase, CobY/MobA/RfbA family [General function prediction only]
Probab=23.09 E-value=54 Score=32.87 Aligned_cols=84 Identities=21% Similarity=0.340 Sum_probs=54.1
Q ss_pred cCHHHHHHHHHHc--CCEEEEEecC----CCCCHHHHHHHHhcCCeEEeechhhhhhhhccCCCcEEEEEecCCCCcccc
Q 008862 385 TNENSLVKMAEDI--GFQVQVVRPD----RTSELAKIYRALNSSDVMVGVHGAAMTHFLFMKPGSVFIQVIPLGTDWAAE 458 (550)
Q Consensus 385 lNe~evv~~l~~~--Gf~V~v~e~~----~~~s~~eQi~l~~~aDVlVGvHGAGLTN~lFmppga~VIEI~P~g~~~~~~ 458 (550)
+|. .+-+++.+. .-+|.++-.+ ....+++.++.-.++||+|++---|=||++|.++.+ +++- +..-
T Consensus 72 LN~-Ai~aa~~~~~~p~~v~vvmaDLPLl~~~~i~~~~~~~~d~dvviaP~~gGGTn~L~~r~~~--~~~~-----y~g~ 143 (210)
T COG1920 72 LNT-AINAALDEIPLPSEVIVVMADLPLLSPEHIERALSAAKDADVVIAPGRGGGTNVLFARKSA--FRPR-----YGGV 143 (210)
T ss_pred hHH-HHHHHHhhCCCCcceEEEecccccCCHHHHHHHHHhcCCCcEEEecCCCCceEEEEEeccc--cccc-----ccCc
Confidence 553 344555553 2345554321 122467778888899999999999999999999833 2221 2222
Q ss_pred cchHH--HHhhcCCceEEEE
Q 008862 459 TYYGE--PARKLGLKYIGYT 476 (550)
Q Consensus 459 ~~Y~~--~A~~~Gl~Y~~y~ 476 (550)
.++.. .|+.+|+.+..|.
T Consensus 144 SF~~Hl~~Ark~G~~~~~~d 163 (210)
T COG1920 144 SFLRHLEEARKRGLVVLTYD 163 (210)
T ss_pred cHHHHHHHHHHcCCEEEEec
Confidence 33444 6889999997764
No 83
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=23.06 E-value=2.7e+02 Score=26.54 Aligned_cols=70 Identities=21% Similarity=0.233 Sum_probs=42.2
Q ss_pred EEEEEEcCCCccccCHHHHHHHHHH-cCCEEEEEecCCCCCHHHHHHHHhcCCeEEeechhhhhhh----hccCCCcEEE
Q 008862 372 KLVILSRNGSRAITNENSLVKMAED-IGFQVQVVRPDRTSELAKIYRALNSSDVMVGVHGAAMTHF----LFMKPGSVFI 446 (550)
Q Consensus 372 rlviIsR~~sR~IlNe~evv~~l~~-~Gf~V~v~e~~~~~s~~eQi~l~~~aDVlVGvHGAGLTN~----lFmppga~VI 446 (550)
++++++|+.. ..+++.+.+++ .+.++...+. .+..+..+.++.+|++|..-.+|+.+. .+..++.+++
T Consensus 54 ~V~l~~R~~~----~~~~l~~~l~~~~~~~~~~~~~---~~~~~~~~~~~~~diVi~at~~g~~~~~~~~~~~~~~~vv~ 126 (194)
T cd01078 54 RVVLVGRDLE----RAQKAADSLRARFGEGVGAVET---SDDAARAAAIKGADVVFAAGAAGVELLEKLAWAPKPLAVAA 126 (194)
T ss_pred EEEEEcCCHH----HHHHHHHHHHhhcCCcEEEeeC---CCHHHHHHHHhcCCEEEECCCCCceechhhhcccCceeEEE
Confidence 6777877532 23344444442 3556655432 456666678899999999888887421 1223456666
Q ss_pred EE
Q 008862 447 QV 448 (550)
Q Consensus 447 EI 448 (550)
.+
T Consensus 127 D~ 128 (194)
T cd01078 127 DV 128 (194)
T ss_pred Ec
Confidence 64
No 84
>PRK10431 N-acetylmuramoyl-l-alanine amidase II; Provisional
Probab=23.05 E-value=1.5e+02 Score=33.24 Aligned_cols=68 Identities=15% Similarity=0.178 Sum_probs=45.8
Q ss_pred CCCCEEEEEEcCCC------c--cccCHHH--------HHHHHHHc-CCEEEEEec-CCCCCHHHHHHHHh--cCCeEEe
Q 008862 368 SKKPKLVILSRNGS------R--AITNENS--------LVKMAEDI-GFQVQVVRP-DRTSELAKIYRALN--SSDVMVG 427 (550)
Q Consensus 368 ~~rprlviIsR~~s------R--~IlNe~e--------vv~~l~~~-Gf~V~v~e~-~~~~s~~eQi~l~~--~aDVlVG 427 (550)
..++.+++|+=.+. . .=+-|.+ |.+.|++. |++|+.... +...++.|-.++.+ +||++|+
T Consensus 188 ~~~~~vIvIDpGHGG~DpGA~g~~G~~EKdv~L~iA~~L~~~L~~~~g~~VvlTR~~D~~v~L~eR~~iAn~~~ADLFIS 267 (445)
T PRK10431 188 TGDKVIIAIDAGHGGQDPGAIGPGGTREKNVTIAIARKLRTLLNDDPMFKGVLTRDGDYFISVMGRSDVARKQNANFLVS 267 (445)
T ss_pred CCCCeEEEEeCCCCCCCCCCcCCCCccHHHHHHHHHHHHHHHHHhCCCCEEEEeCCCCCCCCHHHHHHHHHHcCCCEEEE
Confidence 34666777776441 1 2244544 33444444 799877654 35689999999997 8999999
Q ss_pred echhhhhh
Q 008862 428 VHGAAMTH 435 (550)
Q Consensus 428 vHGAGLTN 435 (550)
+|--+..+
T Consensus 268 IHaNa~~~ 275 (445)
T PRK10431 268 IHADAAPN 275 (445)
T ss_pred EccCCCCC
Confidence 99887765
No 85
>TIGR01284 alt_nitrog_alph nitrogenase alpha chain. This model represents the alpha chains of various forms of the nitrogen-fixing enzyme nitrogenase: vanadium-iron, iron-iron, and molybdenum-iron. Most examples of NifD, the molybdenum-iron type nitrogenase alpha chain, are excluded from this model and described instead by equivalog model TIGR01282. It appears by phylogenetic and UPGMA trees that this model represents a distinct clade of NifD homologs, in which arose several molybdenum-independent forms.
Probab=23.04 E-value=1.1e+02 Score=34.11 Aligned_cols=97 Identities=12% Similarity=0.090 Sum_probs=64.3
Q ss_pred CCEEEEEEcCCCccccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHhcCCeEEeec---hhhhhhhhccCCCcEEE
Q 008862 370 KPKLVILSRNGSRAITNENSLVKMAEDIGFQVQVVRPDRTSELAKIYRALNSSDVMVGVH---GAAMTHFLFMKPGSVFI 446 (550)
Q Consensus 370 rprlviIsR~~sR~IlNe~evv~~l~~~Gf~V~v~e~~~~~s~~eQi~l~~~aDVlVGvH---GAGLTN~lFmppga~VI 446 (550)
+..|-||. ....--+.+|+.+.+++.|++|+..-+ ...+++| ++-+.+|+.-|.+. |..++..|=-+=|.-.+
T Consensus 199 ~~~VNiiG--~~~~~gd~~el~~lL~~~Gl~v~~~~~-g~~s~~e-i~~~~~A~lniv~~~~~~~~~A~~Le~~~GiP~~ 274 (457)
T TIGR01284 199 EYDVNLIG--EYNIQGDLWVLKKYFERMGIQVLSTFT-GNGCYDE-LRWMHRAKLNVVRCARSANYIANELEERYGIPRL 274 (457)
T ss_pred CCeEEEEc--cCCchhhHHHHHHHHHHcCCeEEEEEC-CCCCHHH-HHhccccCEEEEEChHHHHHHHHHHHHHhCCCeE
Confidence 34566664 112224567899999999999975433 4566755 56677777755433 33455655444577788
Q ss_pred EEecCCCCcccccchHHHHhhcCCc
Q 008862 447 QVIPLGTDWAAETYYGEPARKLGLK 471 (550)
Q Consensus 447 EI~P~g~~~~~~~~Y~~~A~~~Gl~ 471 (550)
.+-|+|++. ...+.+.+|+..|+.
T Consensus 275 ~~~~~G~~~-T~~~l~~ia~~~g~~ 298 (457)
T TIGR01284 275 DIDFFGFEY-CAKNLRKIGEFFGIE 298 (457)
T ss_pred ecccCCHHH-HHHHHHHHHHHhCCc
Confidence 887888643 457899999999965
No 86
>PF12689 Acid_PPase: Acid Phosphatase; InterPro: IPR010036 This entry represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterised as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues [, ].; GO: 0016791 phosphatase activity; PDB: 1U7P_A 1U7O_A 2WM8_A.
Probab=22.94 E-value=1.7e+02 Score=28.34 Aligned_cols=90 Identities=14% Similarity=0.208 Sum_probs=45.2
Q ss_pred EEEEcCCC--ccccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHhcCCeEEeechhhhhhhhccCCCcEEEEEecC
Q 008862 374 VILSRNGS--RAITNENSLVKMAEDIGFQVQVVRPDRTSELAKIYRALNSSDVMVGVHGAAMTHFLFMKPGSVFIQVIPL 451 (550)
Q Consensus 374 viIsR~~s--R~IlNe~evv~~l~~~Gf~V~v~e~~~~~s~~eQi~l~~~aDVlVGvHGAGLTN~lFmppga~VIEI~P~ 451 (550)
.+++|.|. +-.-+..++++.|++.|..+.+..-...-..+.|+ +.--+|- .+-.....|...-.-+||+|-
T Consensus 35 ~v~D~~g~~v~lypdv~~iL~~L~~~gv~lavASRt~~P~~A~~~--L~~l~i~-----~~~~~~~~~~~~F~~~eI~~g 107 (169)
T PF12689_consen 35 VVVDSRGEEVSLYPDVPEILQELKERGVKLAVASRTDEPDWAREL--LKLLEID-----DADGDGVPLIEYFDYLEIYPG 107 (169)
T ss_dssp -EEETT--EE---TTHHHHHHHHHHCT--EEEEE--S-HHHHHHH--HHHTT-C---------------CCECEEEESSS
T ss_pred EEEeCCCCEEEeCcCHHHHHHHHHHCCCEEEEEECCCChHHHHHH--HHhcCCC-----ccccccccchhhcchhheecC
Confidence 67899887 88888899999999999999888721111233322 2222222 122344455555555899886
Q ss_pred CCCcccccchHHHHhhcCCceEE
Q 008862 452 GTDWAAETYYGEPARKLGLKYIG 474 (550)
Q Consensus 452 g~~~~~~~~Y~~~A~~~Gl~Y~~ 474 (550)
. -..+|.++.+..|+.|-+
T Consensus 108 s----K~~Hf~~i~~~tgI~y~e 126 (169)
T PF12689_consen 108 S----KTTHFRRIHRKTGIPYEE 126 (169)
T ss_dssp -----HHHHHHHHHHHH---GGG
T ss_pred c----hHHHHHHHHHhcCCChhH
Confidence 3 567899999999999943
No 87
>TIGR01862 N2-ase-Ialpha nitrogenase component I, alpha chain. This model represents the alpha chain of all three varieties (Mo-Fe, V-Fe, and Fe-Fe) of component I of nitrogenase.
Probab=22.94 E-value=1.9e+02 Score=32.03 Aligned_cols=97 Identities=12% Similarity=0.132 Sum_probs=64.0
Q ss_pred CCEEEEEEcCCCccccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHhcCCeEEeechh-h--hhhhhccCCCcEEE
Q 008862 370 KPKLVILSRNGSRAITNENSLVKMAEDIGFQVQVVRPDRTSELAKIYRALNSSDVMVGVHGA-A--MTHFLFMKPGSVFI 446 (550)
Q Consensus 370 rprlviIsR~~sR~IlNe~evv~~l~~~Gf~V~v~e~~~~~s~~eQi~l~~~aDVlVGvHGA-G--LTN~lFmppga~VI 446 (550)
+.+|-||.=. ...-|.+|+.+.|++.|++++..-+ ...+++| ++-+.+|..-|.+.+. | ++..|==+=|.-.+
T Consensus 191 ~~~VNiig~~--~~~~d~~el~~lL~~~Gl~v~~~~~-~~~t~ee-i~~~~~A~lniv~~~~~~~~~A~~L~er~GiP~~ 266 (443)
T TIGR01862 191 EYDVNIIGEY--NIGGDAWVMRIYLEEMGIQVVATFT-GDGTYDE-IRLMHKAKLNLVHCARSANYIANELEERYGIPWM 266 (443)
T ss_pred CCeEEEEccC--cCcccHHHHHHHHHHcCCeEEEEEC-CCCCHHH-HHhcccCCEEEEEChHHHHHHHHHHHHHhCCCeE
Confidence 4556666522 2345788999999999999976433 3566755 5667777776655442 3 34444223367677
Q ss_pred EEecCCCCcccccchHHHHhhcCCc
Q 008862 447 QVIPLGTDWAAETYYGEPARKLGLK 471 (550)
Q Consensus 447 EI~P~g~~~~~~~~Y~~~A~~~Gl~ 471 (550)
.+.|+|++- ...++..+|+..|+.
T Consensus 267 ~~~p~G~~~-t~~~l~~la~~~gi~ 290 (443)
T TIGR01862 267 KIDFFGFTY-TAESLRAIAAFFGIE 290 (443)
T ss_pred ecccCCHHH-HHHHHHHHHHHhCCc
Confidence 777888542 457899999988853
No 88
>cd03146 GAT1_Peptidase_E Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow. Xenopus PepE is developmentally regulated in response to thyroid hormone and, it is thought to play a role in apoptosis during tail reabsorption.
Probab=22.75 E-value=1.8e+02 Score=28.71 Aligned_cols=62 Identities=16% Similarity=0.193 Sum_probs=41.7
Q ss_pred CCCCEEEEEEcCCCccccCHHHHHHHHHHc-CCEEEEEecCCCCCHHHHHHHHhcCCeEEeechhh
Q 008862 368 SKKPKLVILSRNGSRAITNENSLVKMAEDI-GFQVQVVRPDRTSELAKIYRALNSSDVMVGVHGAA 432 (550)
Q Consensus 368 ~~rprlviIsR~~sR~IlNe~evv~~l~~~-Gf~V~v~e~~~~~s~~eQi~l~~~aDVlVGvHGAG 432 (550)
+.++|++||.-...-.=--.+.+.++++++ |++++.+... +-++..+.+.+||+++=.=|.-
T Consensus 29 ~~~~~i~~IptAs~~~~~~~~~~~~a~~~l~G~~~~~~~~~---~~~~~~~~l~~ad~I~l~GG~~ 91 (212)
T cd03146 29 KARPKVLFVPTASGDRDEYTARFYAAFESLRGVEVSHLHLF---DTEDPLDALLEADVIYVGGGNT 91 (212)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHHHHHhhccCcEEEEEecc---CcccHHHHHhcCCEEEECCchH
Confidence 457899999877651112234567888889 9999887632 2344477889999987654543
No 89
>PRK13059 putative lipid kinase; Reviewed
Probab=22.71 E-value=5.8e+02 Score=26.29 Aligned_cols=67 Identities=15% Similarity=0.327 Sum_probs=42.3
Q ss_pred CHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHH-hcCCeEEeechhhhhhhh---ccCCC-cEEEEEecCC
Q 008862 386 NENSLVKMAEDIGFQVQVVRPDRTSELAKIYRAL-NSSDVMVGVHGAAMTHFL---FMKPG-SVFIQVIPLG 452 (550)
Q Consensus 386 Ne~evv~~l~~~Gf~V~v~e~~~~~s~~eQi~l~-~~aDVlVGvHGAGLTN~l---Fmppg-a~VIEI~P~g 452 (550)
..+++.+.+++.|+++.+...........-.+.. ..+|++|.+=|=|-.|.+ .+..+ .+-+=|+|.|
T Consensus 20 ~~~~i~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~GGDGTv~evv~gl~~~~~~~~lgviP~G 91 (295)
T PRK13059 20 ELDKVIRIHQEKGYLVVPYRISLEYDLKNAFKDIDESYKYILIAGGDGTVDNVVNAMKKLNIDLPIGILPVG 91 (295)
T ss_pred HHHHHHHHHHHCCcEEEEEEccCcchHHHHHHHhhcCCCEEEEECCccHHHHHHHHHHhcCCCCcEEEECCC
Confidence 3467888999999998765543222322222222 457999999998866543 13222 3558889998
No 90
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=22.43 E-value=2.4e+02 Score=26.38 Aligned_cols=41 Identities=17% Similarity=0.141 Sum_probs=31.4
Q ss_pred HHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHhcCCe-EEeech
Q 008862 388 NSLVKMAEDIGFQVQVVRPDRTSELAKIYRALNSSDV-MVGVHG 430 (550)
Q Consensus 388 ~evv~~l~~~Gf~V~v~e~~~~~s~~eQi~l~~~aDV-lVGvHG 430 (550)
.-+..+|+..||+|+-+- .+.+.++.++...+.|+ +||+=+
T Consensus 19 ~iv~~~l~~~GfeVi~LG--~~v~~e~~v~aa~~~~adiVglS~ 60 (134)
T TIGR01501 19 KILDHAFTNAGFNVVNLG--VLSPQEEFIKAAIETKADAILVSS 60 (134)
T ss_pred HHHHHHHHHCCCEEEECC--CCCCHHHHHHHHHHcCCCEEEEec
Confidence 346688899999998664 46899999999987666 666533
No 91
>smart00852 MoCF_biosynth Probable molybdopterin binding domain. This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor. The domain is presumed to bind molybdopterin. The structure of this domain is known, and it forms an alpha/beta structure. In the known structure of Gephyrin this domain mediates trimerisation.
Probab=22.32 E-value=1.4e+02 Score=27.03 Aligned_cols=51 Identities=22% Similarity=0.422 Sum_probs=34.9
Q ss_pred cCHHHHHHHHHHcCCEEEEEe--cCCCCCHHHHHH-HHhcCCeEEeechhhhhh
Q 008862 385 TNENSLVKMAEDIGFQVQVVR--PDRTSELAKIYR-ALNSSDVMVGVHGAAMTH 435 (550)
Q Consensus 385 lNe~evv~~l~~~Gf~V~v~e--~~~~~s~~eQi~-l~~~aDVlVGvHGAGLTN 435 (550)
.|..-+.+.+++.|++++... ++....+.+.++ +..++|++|..=|+|.+.
T Consensus 18 ~~~~~l~~~l~~~G~~~~~~~~v~Dd~~~I~~~l~~~~~~~dliittGG~g~g~ 71 (135)
T smart00852 18 SNGPALAELLTELGIEVTRYVIVPDDKEAIKEALREALERADLVITTGGTGPGP 71 (135)
T ss_pred CcHHHHHHHHHHCCCeEEEEEEeCCCHHHHHHHHHHHHhCCCEEEEcCCCCCCC
Confidence 455678899999999875432 233344556654 346799999998888654
No 92
>TIGR01283 nifE nitrogenase molybdenum-iron cofactor biosynthesis protein NifE. This protein is part of the NifEN complex involved in biosynthesis of the molybdenum-iron cofactor used by the homologous NifDK complex of nitrogenase. In a few species, the protein is found as a NifEN fusion protein.
Probab=21.75 E-value=1.9e+02 Score=31.95 Aligned_cols=96 Identities=9% Similarity=0.047 Sum_probs=63.7
Q ss_pred CCEEEEEEcCCCccccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHhcCCeEEeech-h--hhhhhhccCCCcEEE
Q 008862 370 KPKLVILSRNGSRAITNENSLVKMAEDIGFQVQVVRPDRTSELAKIYRALNSSDVMVGVHG-A--AMTHFLFMKPGSVFI 446 (550)
Q Consensus 370 rprlviIsR~~sR~IlNe~evv~~l~~~Gf~V~v~e~~~~~s~~eQi~l~~~aDVlVGvHG-A--GLTN~lFmppga~VI 446 (550)
+..|-||.-.. ..-+..|+.+.|++.|++|+..-+ ...++ ++++-+.+|.+-|.+.+ + .++..|==+=|.-.+
T Consensus 197 ~~~VNiiG~~~--~~~d~~el~~lL~~~Gl~v~~~~~-~~~s~-eei~~~~~A~lniv~~~~~~~~~a~~L~e~~GiP~~ 272 (456)
T TIGR01283 197 VHDINLIGEFN--VAGEFWHVKPLLEKLGIRVLATIT-GDSRY-AEVQTAHRAKLNMVQCSKSMINLARKMEEKYGIPYF 272 (456)
T ss_pred CCcEEEEcCCC--CcccHHHHHHHHHHcCCeEEEEeC-CCCcH-HHHHhcccCcEEEEECHhHHHHHHHHHHHHcCCCEE
Confidence 45566775322 233667999999999999986543 34567 45677888888776543 3 344444333467677
Q ss_pred EEecCCCCcccccchHHHHhhcCC
Q 008862 447 QVIPLGTDWAAETYYGEPARKLGL 470 (550)
Q Consensus 447 EI~P~g~~~~~~~~Y~~~A~~~Gl 470 (550)
+..|+|++. ...+++.+|+.+|.
T Consensus 273 ~~~~~G~~~-T~~~L~~Ia~~lg~ 295 (456)
T TIGR01283 273 EGSFYGIED-TSKALRDIADLFGD 295 (456)
T ss_pred ecCCCcHHH-HHHHHHHHHHHhCC
Confidence 777888643 45789999998884
No 93
>TIGR00147 lipid kinase, YegS/Rv2252/BmrU family. The E. coli member of this family, YegS has been purified and shown to have phosphatidylglycerol kinase activity. The member from M. tuberculosis, Rv2252, has diacylglycerol kinase activity. BmrU from B. subtilis is in an operon with multidrug efflux transporter Bmr, but is uncharacterized.
Probab=21.75 E-value=7.5e+02 Score=25.13 Aligned_cols=81 Identities=12% Similarity=0.183 Sum_probs=49.7
Q ss_pred EEEEEEcC--CCcc-ccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHH--hcCCeEEeechhhhhh----hhccCCC
Q 008862 372 KLVILSRN--GSRA-ITNENSLVKMAEDIGFQVQVVRPDRTSELAKIYRAL--NSSDVMVGVHGAAMTH----FLFMKPG 442 (550)
Q Consensus 372 rlviIsR~--~sR~-IlNe~evv~~l~~~Gf~V~v~e~~~~~s~~eQi~l~--~~aDVlVGvHGAGLTN----~lFmppg 442 (550)
|+.+|-.. ++.+ -...+++.+.+++.|+++.+..........++++.. ..+|++|.+=|=|--| .+.....
T Consensus 3 ~~~ii~Np~sg~~~~~~~~~~i~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~ivv~GGDGTl~~v~~~l~~~~~ 82 (293)
T TIGR00147 3 EAPAILNPTAGKSNDNKPLREVIMLLREEGMEIHVRVTWEKGDAARYVEEARKFGVDTVIAGGGDGTINEVVNALIQLDD 82 (293)
T ss_pred eEEEEECCCccchhhHHHHHHHHHHHHHCCCEEEEEEecCcccHHHHHHHHHhcCCCEEEEECCCChHHHHHHHHhcCCC
Confidence 45555554 3222 223457888899999988776543333455555432 3578999888888655 4554344
Q ss_pred cEEEEEecCC
Q 008862 443 SVFIQVIPLG 452 (550)
Q Consensus 443 a~VIEI~P~g 452 (550)
...|=|+|.|
T Consensus 83 ~~~lgiiP~G 92 (293)
T TIGR00147 83 IPALGILPLG 92 (293)
T ss_pred CCcEEEEcCc
Confidence 4467788988
No 94
>PRK02842 light-independent protochlorophyllide reductase subunit N; Provisional
Probab=21.64 E-value=1.9e+02 Score=31.74 Aligned_cols=94 Identities=18% Similarity=0.302 Sum_probs=59.0
Q ss_pred CCEEEEEEcCCCccccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHhcCCeEEeec--hhhhhhhhccCCCcEEEE
Q 008862 370 KPKLVILSRNGSRAITNENSLVKMAEDIGFQVQVVRPDRTSELAKIYRALNSSDVMVGVH--GAAMTHFLFMKPGSVFIQ 447 (550)
Q Consensus 370 rprlviIsR~~sR~IlNe~evv~~l~~~Gf~V~v~e~~~~~s~~eQi~l~~~aDVlVGvH--GAGLTN~lFmppga~VIE 447 (550)
+.++.++.--. .-+..|+.+.|++.|.+++.+=+. .++.| +..+..+..++..+ +..++..| -+-|.-.+.
T Consensus 166 ~~~VniiG~~~---~~d~~el~~lL~~~Gi~v~~~lp~--~~~~d-~~~~~~~~~~~~~~~~~~~~A~~L-~~~GiP~~~ 238 (427)
T PRK02842 166 HPSLVLVGSLA---DVVEDQLTLEFKKLGIGVVGFLPA--RRFTE-LPAIGPGTVVALAQPFLSDTARAL-RERGAKVLT 238 (427)
T ss_pred CCcEEEEEeCC---cchHHHHHHHHHHcCCeeEEEeCC--ccHHH-HhhcCcCcEEEEeCHHHHHHHHHH-HHcCCcccc
Confidence 34556665432 355688999999999999733342 45544 44544444444444 44555555 555666665
Q ss_pred E-ecCCCCcccccchHHHHhhcCCc
Q 008862 448 V-IPLGTDWAAETYYGEPARKLGLK 471 (550)
Q Consensus 448 I-~P~g~~~~~~~~Y~~~A~~~Gl~ 471 (550)
. +|+|++- ...+++.+|+..|+.
T Consensus 239 ~~~P~G~~~-T~~~L~~la~~~g~~ 262 (427)
T PRK02842 239 APFPLGPEG-TRAWLEAAAAAFGID 262 (427)
T ss_pred CCCCcChHH-HHHHHHHHHHHhCcC
Confidence 5 7888642 457899999998864
No 95
>cd01977 Nitrogenase_VFe_alpha Nitrogenase_VFe_alpha -like: Nitrogenase VFe protein, alpha subunit like. This group contains proteins similar to the alpha subunits of, the VFe protein of the vanadium-dependent (V-) nitrogenase and the FeFe protein of the iron only (Fe-) nitrogenase Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V- and Fe- nitrogenases there is a molybdenum (Mo)-dependent nitrogenase which is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha sub
Probab=21.29 E-value=2.2e+02 Score=31.08 Aligned_cols=97 Identities=14% Similarity=0.095 Sum_probs=63.5
Q ss_pred CCEEEEEEcCCCccccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHhcCCeEEeech-hhhhhhhccC--CCcEEE
Q 008862 370 KPKLVILSRNGSRAITNENSLVKMAEDIGFQVQVVRPDRTSELAKIYRALNSSDVMVGVHG-AAMTHFLFMK--PGSVFI 446 (550)
Q Consensus 370 rprlviIsR~~sR~IlNe~evv~~l~~~Gf~V~v~e~~~~~s~~eQi~l~~~aDVlVGvHG-AGLTN~lFmp--pga~VI 446 (550)
+.+|-||. ....--|.+|+.+.|++.|.+++..-+ ...+++| ++-+.+|.+-|.+.+ .|+.-+-+|. =|.-.+
T Consensus 162 ~~~VNliG--~~~~~~d~~ei~~lL~~~Gl~v~~~~~-~~~t~~e-i~~~~~A~lnlv~~~~~~~~~A~~L~er~GiP~~ 237 (415)
T cd01977 162 DYTINYIG--DYNIQGDTEVLQKYFERMGIQVLSTFT-GNGTYDD-LRWMHRAKLNVVNCARSAGYIANELKKRYGIPRL 237 (415)
T ss_pred CCcEEEEc--cCCCcccHHHHHHHHHHcCCeEEEEEC-CCCCHHH-HHhcccCCEEEEEchhHHHHHHHHHHHHhCCCeE
Confidence 34566664 223345667899999999999974433 4567766 567888887555443 3433334444 366677
Q ss_pred EEecCCCCcccccchHHHHhhcCCc
Q 008862 447 QVIPLGTDWAAETYYGEPARKLGLK 471 (550)
Q Consensus 447 EI~P~g~~~~~~~~Y~~~A~~~Gl~ 471 (550)
.+.|+|++- ...+++.+|+.+|+.
T Consensus 238 ~~~~~G~~~-t~~~l~~la~~~g~~ 261 (415)
T cd01977 238 DVDGFGFEY-CAESLRKIGAFFGIE 261 (415)
T ss_pred EeccCCHHH-HHHHHHHHHHHhCcc
Confidence 777888542 457899999999965
No 96
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=21.06 E-value=3.9e+02 Score=27.19 Aligned_cols=51 Identities=27% Similarity=0.326 Sum_probs=37.7
Q ss_pred HhcCCeEEeechhhhhhh--------hccCCCcEEEEEecCCCCcccccchHHHHhhcCCceE
Q 008862 419 LNSSDVMVGVHGAAMTHF--------LFMKPGSVFIQVIPLGTDWAAETYYGEPARKLGLKYI 473 (550)
Q Consensus 419 ~~~aDVlVGvHGAGLTN~--------lFmppga~VIEI~P~g~~~~~~~~Y~~~A~~~Gl~Y~ 473 (550)
..++|++|..-++|+... -+++++.+|+++.-.. ..+.+...|+..|++++
T Consensus 176 ~~~~DivInatp~gm~~~~~~~~~~~~~l~~~~~v~D~~y~p----~~T~ll~~A~~~G~~~v 234 (270)
T TIGR00507 176 LHRVDLIINATSAGMSGNIDEPPVPAEKLKEGMVVYDMVYNP----GETPFLAEAKSLGTKTI 234 (270)
T ss_pred ccCccEEEECCCCCCCCCCCCCCCCHHHcCCCCEEEEeccCC----CCCHHHHHHHHCCCeee
Confidence 357999999999887432 2378899999996332 23468888999999874
No 97
>COG1597 LCB5 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]
Probab=20.88 E-value=7.8e+02 Score=25.77 Aligned_cols=91 Identities=20% Similarity=0.295 Sum_probs=60.5
Q ss_pred EEEEEcCCC--ccccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHh--cCCeEEeechhhhhh----hhccCCCcE
Q 008862 373 LVILSRNGS--RAITNENSLVKMAEDIGFQVQVVRPDRTSELAKIYRALN--SSDVMVGVHGAAMTH----FLFMKPGSV 444 (550)
Q Consensus 373 lviIsR~~s--R~IlNe~evv~~l~~~Gf~V~v~e~~~~~s~~eQi~l~~--~aDVlVGvHGAGLTN----~lFmppga~ 444 (550)
.+|+.+... ..-...+++.+.+++.|+++.+....+.-...+-++.+. .-|.+|..=|=|..| .++-.+...
T Consensus 6 ~~i~Np~sG~~~~~~~~~~~~~~l~~~g~~~~~~~t~~~g~a~~~a~~a~~~~~D~via~GGDGTv~evingl~~~~~~~ 85 (301)
T COG1597 6 LLIYNPTSGKGKAKKLLREVEELLEEAGHELSVRVTEEAGDAIEIAREAAVEGYDTVIAAGGDGTVNEVANGLAGTDDPP 85 (301)
T ss_pred EEEEcccccccchhhHHHHHHHHHHhcCCeEEEEEeecCccHHHHHHHHHhcCCCEEEEecCcchHHHHHHHHhcCCCCc
Confidence 345555443 334445678899999999888766533334555555443 789999999988655 566555554
Q ss_pred EEEEecCCCCcccccchHHHHhhcCCc
Q 008862 445 FIQVIPLGTDWAAETYYGEPARKLGLK 471 (550)
Q Consensus 445 VIEI~P~g~~~~~~~~Y~~~A~~~Gl~ 471 (550)
+=|+|.|. ....|+.+|+.
T Consensus 86 -LgilP~GT-------~NdfAr~Lgip 104 (301)
T COG1597 86 -LGILPGGT-------ANDFARALGIP 104 (301)
T ss_pred -eEEecCCc-------hHHHHHHcCCC
Confidence 88999983 34567777754
No 98
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=20.76 E-value=1.3e+02 Score=33.10 Aligned_cols=100 Identities=14% Similarity=0.208 Sum_probs=62.6
Q ss_pred CCCEEEEEEcCCCccccCHHHHHHHHHHcCCEEEEEec----------------CCCCCHHHHHHHHhcCCeEEeech-h
Q 008862 369 KKPKLVILSRNGSRAITNENSLVKMAEDIGFQVQVVRP----------------DRTSELAKIYRALNSSDVMVGVHG-A 431 (550)
Q Consensus 369 ~rprlviIsR~~sR~IlNe~evv~~l~~~Gf~V~v~e~----------------~~~~s~~eQi~l~~~aDVlVGvHG-A 431 (550)
.+++|-||.-..+. --|.+|+.+.|++.|.+++.+-. ....+++ +++-+.+|.+-|.++. .
T Consensus 159 ~~~~VNli~~~~~~-~d~~~el~~lL~~~Gl~~~~~~d~s~~~d~~~~~~~~~~~gg~~~~-~i~~~~~A~~niv~~~~~ 236 (435)
T cd01974 159 KNGKLNIIPGFDTY-AGNMREIKRLLELMGVDYTILPDTSDVLDTPADGEYRMYPGGTTLE-ELKDAGNAKATLALQEYA 236 (435)
T ss_pred CCCeEEEECCCCCC-cchHHHHHHHHHHcCCCEEEecccccccCCCCCCCccccCCCCCHH-HHHhhccCcEEEEECccc
Confidence 34566666422222 12689999999999999976420 0235564 4566777777666553 2
Q ss_pred hhhhhhccC--CCcEEEEE-ecCCCCcccccchHHHHhhcCCc
Q 008862 432 AMTHFLFMK--PGSVFIQV-IPLGTDWAAETYYGEPARKLGLK 471 (550)
Q Consensus 432 GLTN~lFmp--pga~VIEI-~P~g~~~~~~~~Y~~~A~~~Gl~ 471 (550)
|..-.-+|. =|.-.+.. .|+|++ ....|++.+|+..|..
T Consensus 237 ~~~~a~~Le~~~giP~~~~~~p~G~~-~t~~~l~~l~~~~g~~ 278 (435)
T cd01974 237 TEKTAKFLEKKCKVPVETLNMPIGVA-ATDEFLMALSELTGKP 278 (435)
T ss_pred cHHHHHHHHHHhCCCeeecCCCcChH-HHHHHHHHHHHHhCCC
Confidence 332233433 45656777 599964 2467899999999875
No 99
>TIGR02015 BchY chlorophyllide reductase subunit Y. This model represents the Y subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase.
Probab=20.64 E-value=1.3e+02 Score=33.09 Aligned_cols=81 Identities=16% Similarity=0.192 Sum_probs=58.3
Q ss_pred CHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHhcC--CeEEeechhhhhhhhccCCCcEEEEEecCCCCcccccchHH
Q 008862 386 NENSLVKMAEDIGFQVQVVRPDRTSELAKIYRALNSS--DVMVGVHGAAMTHFLFMKPGSVFIQVIPLGTDWAAETYYGE 463 (550)
Q Consensus 386 Ne~evv~~l~~~Gf~V~v~e~~~~~s~~eQi~l~~~a--DVlVGvHGAGLTN~lFmppga~VIEI~P~g~~~~~~~~Y~~ 463 (550)
|..|+.+.+++.|.++.++-+ ..+++|. +-+.+| .++++.+. +.+-.++.+-|.-.++..|.|++- ...|.+.
T Consensus 178 d~~eik~lL~~~Gi~~~~~~~--G~~~~ei-~~a~~A~~~i~l~~~~-~~a~~l~~~~GvP~~~~~PiG~~~-Td~fL~~ 252 (422)
T TIGR02015 178 DAMVIGGVLQPIGVESGPTVP--GRDWREL-YAALDSSAVAVLHPFY-EATARLFEAAGVKIVGSAPVGANG-TGEWLER 252 (422)
T ss_pred cHHHHHHHHHHcCCCeEEecC--CCCHHHH-HhhhcCeEEEEeCccc-hHHHHHHHHcCCceeccCCCChHH-HHHHHHH
Confidence 677899999999999977654 3477664 555444 44555443 456777777777678888999653 4678899
Q ss_pred HHhhcCCc
Q 008862 464 PARKLGLK 471 (550)
Q Consensus 464 ~A~~~Gl~ 471 (550)
+|+..|..
T Consensus 253 la~~~G~~ 260 (422)
T TIGR02015 253 IGEALDLD 260 (422)
T ss_pred HHHHhCcC
Confidence 99999965
No 100
>PF03575 Peptidase_S51: Peptidase family S51; InterPro: IPR005320 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S51 (clan PC(S)). The type example being dipeptidase E (alpha-aspartyl dipeptidase) from Escherichia coli. The family contains alpha-aspartyl dipeptidases (dipeptidase E) and cyanophycinases. The three-dimensional structure of Salmonella typhimurium aspartyl dipeptidase, peptidase E has been determine at 1.2-A resolution. The structure of this 25kDa enzyme consists of two mixed beta-sheets forming a V, flanked by six alpha-helices. The active site contains a Ser-His-Glu catalytic triad and is the first example of a serine peptidase/protease with a glutamate in the catalytic triad. The active site Ser is located on a strand-helix motif reminiscent of that found in alpha/beta-hydrolases, but the polypeptide fold and the organisation of the catalytic triad differ from those of the known serine proteases. This enzyme appears to represent a new example of convergent evolution of peptidase activity []. Alpha-aspartyl dipeptidase hydrolyses dipeptides containing N-terminal aspartate residues, asp-|-xaa. It does not act on peptides with N-terminal Glu, Asn or Gln, nor does it cleave isoaspartyl peptides. In the cyanobacteria, cyanophycinase is an exopeptidase that catalyses the hydrolytic cleavage of multi-l-arginyl-poly-l-aspartic acid (cyanophycin; a water- insoluble reserve polymer) into aspartate-arginine dipeptides.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3EN0_B 1FYE_A 1FY2_A 3L4E_A.
Probab=20.54 E-value=1.9e+02 Score=26.83 Aligned_cols=42 Identities=21% Similarity=0.301 Sum_probs=26.7
Q ss_pred HHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHhcCCeEEeech
Q 008862 388 NSLVKMAEDIGFQVQVVRPDRTSELAKIYRALNSSDVMVGVHG 430 (550)
Q Consensus 388 ~evv~~l~~~Gf~V~v~e~~~~~s~~eQi~l~~~aDVlVGvHG 430 (550)
+++.++++++|++|..++. ...+-++..+.+.+||++.=-=|
T Consensus 3 ~~~~~~f~~~g~~v~~l~~-~~~~~~~~~~~i~~ad~I~~~GG 44 (154)
T PF03575_consen 3 EKFRKAFRKLGFEVDQLDL-SDRNDADILEAIREADAIFLGGG 44 (154)
T ss_dssp HHHHHHHHHCT-EEEECCC-TSCGHHHHHHHHHHSSEEEE--S
T ss_pred HHHHHHHHHCCCEEEEEec-cCCChHHHHHHHHhCCEEEECCC
Confidence 4566777888888777764 23456677777788887764433
No 101
>COG0860 AmiC N-acetylmuramoyl-L-alanine amidase [Cell envelope biogenesis, outer membrane]
Probab=20.09 E-value=2.3e+02 Score=28.72 Aligned_cols=47 Identities=21% Similarity=0.302 Sum_probs=33.2
Q ss_pred HHHHHHHHcCCEEEEEecC-CCCCHHHHHHHHh--cCCeEEeechhhhhh
Q 008862 389 SLVKMAEDIGFQVQVVRPD-RTSELAKIYRALN--SSDVMVGVHGAAMTH 435 (550)
Q Consensus 389 evv~~l~~~Gf~V~v~e~~-~~~s~~eQi~l~~--~aDVlVGvHGAGLTN 435 (550)
.+.+.|++.|++|+.-... ...++.+-.++.+ .||++|++|--+..+
T Consensus 76 ~l~~~L~~~g~~v~mTR~~D~~~~l~~R~~~A~~~~adlfiSIH~na~~~ 125 (231)
T COG0860 76 RLRDLLRAEGVEVVLTRTSDTFVSLNERVAIANASGADLFVSIHANAAPS 125 (231)
T ss_pred HHHHHHHhCCCEEEEecCCCCcCCHHHHHHHHHhcCCCEEEEEecCCCCC
Confidence 4566777789888876642 3356777666665 589999999766654
No 102
>PRK13055 putative lipid kinase; Reviewed
Probab=20.00 E-value=6.7e+02 Score=26.41 Aligned_cols=68 Identities=13% Similarity=0.240 Sum_probs=43.1
Q ss_pred CHHHHHHHHHHcCCEEEEEecC-CCCCHHHHHHHH--hcCCeEEeechhhhhh----hhccCCCcEEEEEecCCC
Q 008862 386 NENSLVKMAEDIGFQVQVVRPD-RTSELAKIYRAL--NSSDVMVGVHGAAMTH----FLFMKPGSVFIQVIPLGT 453 (550)
Q Consensus 386 Ne~evv~~l~~~Gf~V~v~e~~-~~~s~~eQi~l~--~~aDVlVGvHGAGLTN----~lFmppga~VIEI~P~g~ 453 (550)
..+++.+.+++.|+++.+.... ......+.++.. ...|+||.+=|=|-.| .+.-......+=|+|.|.
T Consensus 21 ~~~~i~~~l~~~g~~~~i~~t~~~~~~a~~~~~~~~~~~~d~vvv~GGDGTl~evvngl~~~~~~~~LgiiP~GT 95 (334)
T PRK13055 21 NVADILDILEQAGYETSAFQTTPEPNSAKNEAKRAAEAGFDLIIAAGGDGTINEVVNGIAPLEKRPKMAIIPAGT 95 (334)
T ss_pred HHHHHHHHHHHcCCeEEEEEeecCCccHHHHHHHHhhcCCCEEEEECCCCHHHHHHHHHhhcCCCCcEEEECCCc
Confidence 4467889999999887765432 223444444433 4679999888888655 333112235688999983
Done!