Query 008862
Match_columns 550
No_of_seqs 280 out of 663
Neff 5.4
Searched_HMMs 29240
Date Mon Mar 25 13:28:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008862.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008862hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4a5o_A Bifunctional protein fo 75.3 5.9 0.0002 40.1 7.4 90 369-468 160-255 (286)
2 3ngx_A Bifunctional protein fo 73.8 6.3 0.00022 39.7 7.1 73 369-449 149-222 (276)
3 3czx_A Putative N-acetylmuramo 71.7 4.9 0.00017 37.6 5.4 47 389-435 36-84 (182)
4 3p2o_A Bifunctional protein fo 71.0 8.1 0.00028 39.1 7.2 71 369-449 159-232 (285)
5 3l07_A Bifunctional protein fo 70.8 8.6 0.00029 38.9 7.3 71 369-449 160-233 (285)
6 1a4i_A Methylenetetrahydrofola 69.2 9.6 0.00033 38.8 7.3 73 369-449 164-237 (301)
7 4a26_A Putative C-1-tetrahydro 68.2 8.5 0.00029 39.2 6.6 73 369-449 164-239 (300)
8 3tnl_A Shikimate dehydrogenase 66.2 31 0.0011 35.0 10.4 94 371-472 179-282 (315)
9 1b0a_A Protein (fold bifunctio 63.9 12 0.00041 37.9 6.7 73 369-449 158-231 (288)
10 4b4u_A Bifunctional protein fo 58.2 22 0.00074 36.3 7.5 71 370-448 179-250 (303)
11 1jwq_A N-acetylmuramoyl-L-alan 54.5 16 0.00053 34.0 5.4 47 389-435 36-86 (179)
12 3qay_A Endolysin; amidase A/B 51.2 21 0.00073 33.1 5.7 44 390-433 38-89 (180)
13 3gvx_A Glycerate dehydrogenase 49.7 62 0.0021 32.3 9.2 129 389-547 136-286 (290)
14 2c2x_A Methylenetetrahydrofola 49.7 27 0.00091 35.2 6.5 72 369-448 157-231 (281)
15 3t4e_A Quinate/shikimate dehyd 49.7 83 0.0028 31.7 10.3 94 371-472 173-276 (312)
16 3ne8_A N-acetylmuramoyl-L-alan 47.9 22 0.00074 34.6 5.4 46 390-435 39-88 (234)
17 2amj_A Modulator of drug activ 44.2 35 0.0012 31.8 6.1 39 389-427 38-76 (204)
18 3fni_A Putative diflavin flavo 43.8 23 0.0008 31.7 4.6 55 369-426 5-61 (159)
19 3don_A Shikimate dehydrogenase 42.8 45 0.0015 33.0 6.9 91 372-472 119-229 (277)
20 3fbt_A Chorismate mutase and s 42.4 64 0.0022 32.1 8.0 91 370-472 122-233 (282)
21 2q62_A ARSH; alpha/beta, flavo 42.1 50 0.0017 32.1 7.0 57 369-427 33-104 (247)
22 1xov_A PLY protein, plypsa; al 40.4 17 0.0006 37.2 3.5 43 390-432 46-94 (326)
23 3rpe_A MDAB, modulator of drug 38.4 36 0.0012 32.7 5.2 39 389-427 51-89 (218)
24 1edz_A 5,10-methylenetetrahydr 34.3 34 0.0012 35.0 4.5 76 369-448 176-274 (320)
25 3hly_A Flavodoxin-like domain; 33.6 47 0.0016 29.6 4.9 52 372-426 4-56 (161)
26 2egg_A AROE, shikimate 5-dehyd 32.9 1E+02 0.0034 30.5 7.7 56 414-473 197-260 (297)
27 2fzv_A Putative arsenical resi 31.2 1.2E+02 0.0042 30.1 8.0 56 369-427 57-129 (279)
28 1wwk_A Phosphoglycerate dehydr 30.0 3.1E+02 0.011 27.1 10.8 132 389-542 156-306 (307)
29 2f9f_A First mannosyl transfer 29.2 1.7E+02 0.0058 25.5 7.9 38 366-405 19-57 (177)
30 1mkz_A Molybdenum cofactor bio 29.0 97 0.0033 28.2 6.3 68 368-435 8-83 (172)
31 1nw9_B Caspase 9, apoptosis-re 28.9 38 0.0013 33.4 3.8 20 386-405 47-66 (277)
32 3l4e_A Uncharacterized peptida 28.7 1.3E+02 0.0044 28.3 7.3 65 370-435 27-93 (206)
33 3jyo_A Quinate/shikimate dehyd 28.5 1.3E+02 0.0044 29.7 7.6 87 372-472 153-248 (283)
34 1i1q_B Anthranilate synthase c 27.0 55 0.0019 29.9 4.2 52 371-428 1-55 (192)
35 3evt_A Phosphoglycerate dehydr 27.0 3.9E+02 0.013 26.8 10.9 132 389-542 151-301 (324)
36 2gt1_A Lipopolysaccharide hept 26.3 1.8E+02 0.0063 28.1 8.2 81 369-451 177-281 (326)
37 3u7q_A Nitrogenase molybdenum- 26.3 1.1E+02 0.0038 32.7 7.1 98 368-470 218-318 (492)
38 3tov_A Glycosyl transferase fa 25.9 3.4E+02 0.011 27.0 10.3 81 369-451 184-289 (349)
39 2yxb_A Coenzyme B12-dependent 25.6 1.5E+02 0.0051 26.7 6.8 54 368-423 16-69 (161)
40 1psw_A ADP-heptose LPS heptosy 25.1 3E+02 0.01 26.6 9.5 82 369-452 179-290 (348)
41 2pjk_A 178AA long hypothetical 23.7 1.3E+02 0.0044 27.7 6.1 69 367-435 12-95 (178)
42 2zuv_A Lacto-N-biose phosphory 23.5 19 0.00066 40.6 0.4 115 370-497 438-591 (759)
43 2dko_A Caspase-3; low barrier 23.3 74 0.0025 28.6 4.3 42 387-431 43-95 (146)
44 3pwz_A Shikimate dehydrogenase 23.1 2.2E+02 0.0074 27.9 8.0 48 420-471 180-233 (272)
45 3pzy_A MOG; ssgcid, seattle st 22.9 56 0.0019 29.8 3.4 67 368-435 5-80 (164)
46 2j32_A Caspase-3; Pro-caspase3 22.5 76 0.0026 30.8 4.5 55 386-442 42-104 (250)
47 2eez_A Alanine dehydrogenase; 21.8 1.9E+02 0.0065 29.2 7.6 94 381-480 13-120 (369)
48 1qtn_A Caspase-8; apoptosis, d 21.4 1E+02 0.0034 28.3 4.8 54 387-442 57-118 (164)
49 2ql9_A Caspase-7; cysteine pro 21.1 70 0.0024 29.8 3.7 54 387-442 71-132 (173)
50 3gvp_A Adenosylhomocysteinase 21.0 78 0.0027 33.7 4.5 58 389-449 234-307 (435)
51 3rfq_A Pterin-4-alpha-carbinol 21.0 68 0.0023 30.0 3.6 71 366-436 26-104 (185)
52 4dio_A NAD(P) transhydrogenase 20.6 1.3E+02 0.0044 31.7 6.0 35 415-449 269-312 (405)
53 3kbq_A Protein TA0487; structu 20.5 86 0.0029 29.1 4.2 66 370-435 3-76 (172)
54 1m72_A Caspase-1; caspase, cys 20.2 89 0.003 30.8 4.5 54 387-442 58-119 (272)
55 3aek_B Light-independent proto 20.2 55 0.0019 35.4 3.2 101 369-472 152-257 (525)
56 2fi0_A Conserved domain protei 20.0 66 0.0023 25.9 2.9 21 382-402 58-78 (81)
No 1
>4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1}
Probab=75.35 E-value=5.9 Score=40.11 Aligned_cols=90 Identities=19% Similarity=0.199 Sum_probs=61.5
Q ss_pred CCCEEEEEEcCCC--ccccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHhcCCeEEeechhh-hhhhhccCCCcEE
Q 008862 369 KKPKLVILSRNGS--RAITNENSLVKMAEDIGFQVQVVRPDRTSELAKIYRALNSSDVMVGVHGAA-MTHFLFMKPGSVF 445 (550)
Q Consensus 369 ~rprlviIsR~~s--R~IlNe~evv~~l~~~Gf~V~v~e~~~~~s~~eQi~l~~~aDVlVGvHGAG-LTN~lFmppga~V 445 (550)
..-++++|.|.+. | -+..+|...|..|.+..- .+.++++ .+++|||+|+.-|+. +...=|++||++|
T Consensus 160 ~Gk~vvVvGrs~iVG~------plA~lL~~~gAtVtv~hs-~T~~L~~---~~~~ADIVI~Avg~p~~I~~~~vk~GavV 229 (286)
T 4a5o_A 160 YGMDAVVVGASNIVGR------PMALELLLGGCTVTVTHR-FTRDLAD---HVSRADLVVVAAGKPGLVKGEWIKEGAIV 229 (286)
T ss_dssp TTCEEEEECTTSTTHH------HHHHHHHHTTCEEEEECT-TCSCHHH---HHHTCSEEEECCCCTTCBCGGGSCTTCEE
T ss_pred CCCEEEEECCCchhHH------HHHHHHHHCCCeEEEEeC-CCcCHHH---HhccCCEEEECCCCCCCCCHHHcCCCeEE
Confidence 3457899998863 3 367778888999998863 3456654 478999999998875 6666678999999
Q ss_pred EEEecCCC---CcccccchHHHHhhc
Q 008862 446 IQVIPLGT---DWAAETYYGEPARKL 468 (550)
Q Consensus 446 IEI~P~g~---~~~~~~~Y~~~A~~~ 468 (550)
|-+--.-. ..-....|.......
T Consensus 230 IDvgi~~~~~gkl~GDVdf~~v~~~a 255 (286)
T 4a5o_A 230 IDVGINRQADGRLVGDVEYEVAAQRA 255 (286)
T ss_dssp EECCSCSSCCCCSSCSBCHHHHHHHC
T ss_pred EEecccccccCCcccCccHHHHHhhc
Confidence 99842110 112344566555443
No 2
>3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A
Probab=73.80 E-value=6.3 Score=39.66 Aligned_cols=73 Identities=23% Similarity=0.344 Sum_probs=54.1
Q ss_pred CCCEEEEEEcCCCccccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHhcCCeEEeechhh-hhhhhccCCCcEEEE
Q 008862 369 KKPKLVILSRNGSRAITNENSLVKMAEDIGFQVQVVRPDRTSELAKIYRALNSSDVMVGVHGAA-MTHFLFMKPGSVFIQ 447 (550)
Q Consensus 369 ~rprlviIsR~~sR~IlNe~evv~~l~~~Gf~V~v~e~~~~~s~~eQi~l~~~aDVlVGvHGAG-LTN~lFmppga~VIE 447 (550)
..-++++|.|.+. +- .-+..+|...|..|.+..- .+.++++ .+++|||+|+.-|+. +...=|++||++||-
T Consensus 149 ~Gk~vvVvG~s~i---VG-~plA~lL~~~gAtVtv~~~-~t~~L~~---~~~~ADIVI~Avg~p~~I~~~~vk~GavVID 220 (276)
T 3ngx_A 149 HENTVTIVNRSPV---VG-RPLSMMLLNRNYTVSVCHS-KTKDIGS---MTRSSKIVVVAVGRPGFLNREMVTPGSVVID 220 (276)
T ss_dssp CSCEEEEECCCTT---TH-HHHHHHHHHTTCEEEEECT-TCSCHHH---HHHHSSEEEECSSCTTCBCGGGCCTTCEEEE
T ss_pred CCCEEEEEcCChH---HH-HHHHHHHHHCCCeEEEEeC-CcccHHH---hhccCCEEEECCCCCccccHhhccCCcEEEE
Confidence 3457889998863 00 1366777888999998863 3456655 488999999998874 666667899999999
Q ss_pred Ee
Q 008862 448 VI 449 (550)
Q Consensus 448 I~ 449 (550)
+-
T Consensus 221 vg 222 (276)
T 3ngx_A 221 VG 222 (276)
T ss_dssp CC
T ss_pred ec
Confidence 83
No 3
>3czx_A Putative N-acetylmuramoyl-L-alanine amidase; structural genomics, PSI, MCSG, protein structure initiative; 1.60A {Neisseria meningitidis MC58}
Probab=71.71 E-value=4.9 Score=37.58 Aligned_cols=47 Identities=17% Similarity=0.251 Sum_probs=37.3
Q ss_pred HHHHHHHHc-CCEEEEEec-CCCCCHHHHHHHHhcCCeEEeechhhhhh
Q 008862 389 SLVKMAEDI-GFQVQVVRP-DRTSELAKIYRALNSSDVMVGVHGAAMTH 435 (550)
Q Consensus 389 evv~~l~~~-Gf~V~v~e~-~~~~s~~eQi~l~~~aDVlVGvHGAGLTN 435 (550)
+|.+.|++. |++|+.... +...++.+-+++.+.||++|++|--+..|
T Consensus 36 ~l~~~L~~~~G~~V~~tR~~d~~~~L~~R~~~an~adlfISIH~Na~~~ 84 (182)
T 3czx_A 36 IVASILRNDYGLTVKTDGTGKGNMPLRDAVKLIRGSDVAIEFHTNAAAN 84 (182)
T ss_dssp HHHHHHHHHHCCCEEESCSSCCCCCHHHHHHHHHTCSEEEEECCBCCSS
T ss_pred HHHHHHhhcCCcEEEEecCCCccCCHHHHHHHhhCCCEEEEeccCCCCC
Confidence 355666777 999987654 35679999999999999999999776554
No 4
>3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp}
Probab=70.97 E-value=8.1 Score=39.06 Aligned_cols=71 Identities=20% Similarity=0.305 Sum_probs=53.9
Q ss_pred CCCEEEEEEcCCC--ccccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHhcCCeEEeechhh-hhhhhccCCCcEE
Q 008862 369 KKPKLVILSRNGS--RAITNENSLVKMAEDIGFQVQVVRPDRTSELAKIYRALNSSDVMVGVHGAA-MTHFLFMKPGSVF 445 (550)
Q Consensus 369 ~rprlviIsR~~s--R~IlNe~evv~~l~~~Gf~V~v~e~~~~~s~~eQi~l~~~aDVlVGvHGAG-LTN~lFmppga~V 445 (550)
..-++++|.|.+. | -+..+|...|..|.+..- .+.++++ .+++|||+|+.-|+. +...=|++||++|
T Consensus 159 ~Gk~vvVvGrs~iVG~------p~A~lL~~~gAtVtv~h~-~t~~L~~---~~~~ADIVI~Avg~p~~I~~~~vk~GavV 228 (285)
T 3p2o_A 159 EGKDAVIIGASNIVGR------PMATMLLNAGATVSVCHI-KTKDLSL---YTRQADLIIVAAGCVNLLRSDMVKEGVIV 228 (285)
T ss_dssp TTCEEEEECCCTTTHH------HHHHHHHHTTCEEEEECT-TCSCHHH---HHTTCSEEEECSSCTTCBCGGGSCTTEEE
T ss_pred CCCEEEEECCCchHHH------HHHHHHHHCCCeEEEEeC-CchhHHH---HhhcCCEEEECCCCCCcCCHHHcCCCeEE
Confidence 3457889998863 3 366778888999998863 3445654 589999999988865 6666678999999
Q ss_pred EEEe
Q 008862 446 IQVI 449 (550)
Q Consensus 446 IEI~ 449 (550)
|-+-
T Consensus 229 IDVg 232 (285)
T 3p2o_A 229 VDVG 232 (285)
T ss_dssp EECC
T ss_pred EEec
Confidence 9983
No 5
>3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis}
Probab=70.82 E-value=8.6 Score=38.87 Aligned_cols=71 Identities=15% Similarity=0.227 Sum_probs=53.2
Q ss_pred CCCEEEEEEcCCC--ccccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHhcCCeEEeechhh-hhhhhccCCCcEE
Q 008862 369 KKPKLVILSRNGS--RAITNENSLVKMAEDIGFQVQVVRPDRTSELAKIYRALNSSDVMVGVHGAA-MTHFLFMKPGSVF 445 (550)
Q Consensus 369 ~rprlviIsR~~s--R~IlNe~evv~~l~~~Gf~V~v~e~~~~~s~~eQi~l~~~aDVlVGvHGAG-LTN~lFmppga~V 445 (550)
..-++++|.|.+. | -+..+|...|..|.+..- .+.++++ .+++|||+|+.-|+. +...=|++||++|
T Consensus 160 ~Gk~vvVIG~s~iVG~------p~A~lL~~~gAtVtv~hs-~t~~L~~---~~~~ADIVI~Avg~p~~I~~~~vk~GavV 229 (285)
T 3l07_A 160 EGAYAVVVGASNVVGK------PVSQLLLNAKATVTTCHR-FTTDLKS---HTTKADILIVAVGKPNFITADMVKEGAVV 229 (285)
T ss_dssp TTCEEEEECCCTTTHH------HHHHHHHHTTCEEEEECT-TCSSHHH---HHTTCSEEEECCCCTTCBCGGGSCTTCEE
T ss_pred CCCEEEEECCCchhHH------HHHHHHHHCCCeEEEEeC-CchhHHH---hcccCCEEEECCCCCCCCCHHHcCCCcEE
Confidence 3456889988863 3 366778888999988853 3445654 589999999988865 5555678999999
Q ss_pred EEEe
Q 008862 446 IQVI 449 (550)
Q Consensus 446 IEI~ 449 (550)
|.+-
T Consensus 230 IDvg 233 (285)
T 3l07_A 230 IDVG 233 (285)
T ss_dssp EECC
T ss_pred EEec
Confidence 9983
No 6
>1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A*
Probab=69.17 E-value=9.6 Score=38.80 Aligned_cols=73 Identities=19% Similarity=0.289 Sum_probs=53.0
Q ss_pred CCCEEEEEEcCCCccccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHhcCCeEEeechhh-hhhhhccCCCcEEEE
Q 008862 369 KKPKLVILSRNGSRAITNENSLVKMAEDIGFQVQVVRPDRTSELAKIYRALNSSDVMVGVHGAA-MTHFLFMKPGSVFIQ 447 (550)
Q Consensus 369 ~rprlviIsR~~sR~IlNe~evv~~l~~~Gf~V~v~e~~~~~s~~eQi~l~~~aDVlVGvHGAG-LTN~lFmppga~VIE 447 (550)
..-++++|.|.+. +-. -+...|...|..|.+... .+.++. +.+++|||+|+.-|.. +...=|++||++||-
T Consensus 164 ~gk~vvVIG~s~i---VG~-p~A~lL~~~gAtVtv~hs-~t~~L~---~~~~~ADIVI~Avg~p~~I~~~~vk~GavVID 235 (301)
T 1a4i_A 164 AGRHAVVVGRSKI---VGA-PMHDLLLWNNATVTTCHS-KTAHLD---EEVNKGDILVVATGQPEMVKGEWIKPGAIVID 235 (301)
T ss_dssp TTCEEEEECCCTT---THH-HHHHHHHHTTCEEEEECT-TCSSHH---HHHTTCSEEEECCCCTTCBCGGGSCTTCEEEE
T ss_pred CCCEEEEECCCch---HHH-HHHHHHHhCCCeEEEEEC-CcccHH---HHhccCCEEEECCCCcccCCHHHcCCCcEEEE
Confidence 4567899988753 111 266777788999998853 234454 5588999999998875 555567899999999
Q ss_pred Ee
Q 008862 448 VI 449 (550)
Q Consensus 448 I~ 449 (550)
+-
T Consensus 236 Vg 237 (301)
T 1a4i_A 236 CG 237 (301)
T ss_dssp CC
T ss_pred cc
Confidence 83
No 7
>4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major}
Probab=68.17 E-value=8.5 Score=39.19 Aligned_cols=73 Identities=18% Similarity=0.273 Sum_probs=53.2
Q ss_pred CCCEEEEEEcCCC--ccccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHhcCCeEEeechhh-hhhhhccCCCcEE
Q 008862 369 KKPKLVILSRNGS--RAITNENSLVKMAEDIGFQVQVVRPDRTSELAKIYRALNSSDVMVGVHGAA-MTHFLFMKPGSVF 445 (550)
Q Consensus 369 ~rprlviIsR~~s--R~IlNe~evv~~l~~~Gf~V~v~e~~~~~s~~eQi~l~~~aDVlVGvHGAG-LTN~lFmppga~V 445 (550)
..-++++|.|.+. | -++.+|.+.|..|.+..- .+.+++ ..+.+++|||+|+.-|.. +...=|++||++|
T Consensus 164 ~Gk~vvVIG~s~iVG~------p~A~lL~~~gAtVtv~~~-~T~~l~-l~~~~~~ADIVI~Avg~p~~I~~~~vk~GavV 235 (300)
T 4a26_A 164 AGKRAVVLGRSNIVGA------PVAALLMKENATVTIVHS-GTSTED-MIDYLRTADIVIAAMGQPGYVKGEWIKEGAAV 235 (300)
T ss_dssp TTCEEEEECCCTTTHH------HHHHHHHHTTCEEEEECT-TSCHHH-HHHHHHTCSEEEECSCCTTCBCGGGSCTTCEE
T ss_pred CCCEEEEECCCchHHH------HHHHHHHHCCCeEEEEeC-CCCCch-hhhhhccCCEEEECCCCCCCCcHHhcCCCcEE
Confidence 3457889988863 3 366777888999998863 233343 015689999999988875 5566678999999
Q ss_pred EEEe
Q 008862 446 IQVI 449 (550)
Q Consensus 446 IEI~ 449 (550)
|-+-
T Consensus 236 IDvg 239 (300)
T 4a26_A 236 VDVG 239 (300)
T ss_dssp EECC
T ss_pred EEEe
Confidence 9983
No 8
>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A*
Probab=66.17 E-value=31 Score=34.97 Aligned_cols=94 Identities=15% Similarity=0.222 Sum_probs=62.5
Q ss_pred CEEEEEEcCCCccccCHHHHHHHHHH-cCCEEEEEecCCCCCHHHHHHHHhcCCeEEeechhhhhh---------hhccC
Q 008862 371 PKLVILSRNGSRAITNENSLVKMAED-IGFQVQVVRPDRTSELAKIYRALNSSDVMVGVHGAAMTH---------FLFMK 440 (550)
Q Consensus 371 prlviIsR~~sR~IlNe~evv~~l~~-~Gf~V~v~e~~~~~s~~eQi~l~~~aDVlVGvHGAGLTN---------~lFmp 440 (550)
.+|++++|+.. .....+++++.+.+ .|.++.+.... +..+--+.+..+|++|..-.+|+.. .-+++
T Consensus 179 ~~V~i~nR~~~-~~~~a~~la~~~~~~~~~~~~~~~~~---~~~~l~~~l~~aDiIINaTp~Gm~~~~~~~p~~~~~~l~ 254 (315)
T 3tnl_A 179 KEISIFNRKDD-FYANAEKTVEKINSKTDCKAQLFDIE---DHEQLRKEIAESVIFTNATGVGMKPFEGETLLPSADMLR 254 (315)
T ss_dssp SEEEEEECSST-THHHHHHHHHHHHHHSSCEEEEEETT---CHHHHHHHHHTCSEEEECSSTTSTTSTTCCSCCCGGGCC
T ss_pred CEEEEEECCCc-hHHHHHHHHHHhhhhcCCceEEeccc---hHHHHHhhhcCCCEEEECccCCCCCCCCCCCCCcHHHcC
Confidence 36888888742 23345566655554 46777666532 2333345678999999888887652 22468
Q ss_pred CCcEEEEEecCCCCcccccchHHHHhhcCCce
Q 008862 441 PGSVFIQVIPLGTDWAAETYYGEPARKLGLKY 472 (550)
Q Consensus 441 pga~VIEI~P~g~~~~~~~~Y~~~A~~~Gl~Y 472 (550)
++.+|++++--. ..+.+-..|+..|.+.
T Consensus 255 ~~~~V~DlvY~P----~~T~ll~~A~~~G~~~ 282 (315)
T 3tnl_A 255 PELIVSDVVYKP----TKTRLLEIAEEQGCQT 282 (315)
T ss_dssp TTCEEEESCCSS----SSCHHHHHHHHTTCEE
T ss_pred CCCEEEEeccCC----CCCHHHHHHHHCCCeE
Confidence 899999997331 3567889999999875
No 9
>1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2
Probab=63.93 E-value=12 Score=37.87 Aligned_cols=73 Identities=15% Similarity=0.172 Sum_probs=52.7
Q ss_pred CCCEEEEEEcCCCccccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHhcCCeEEeechhh-hhhhhccCCCcEEEE
Q 008862 369 KKPKLVILSRNGSRAITNENSLVKMAEDIGFQVQVVRPDRTSELAKIYRALNSSDVMVGVHGAA-MTHFLFMKPGSVFIQ 447 (550)
Q Consensus 369 ~rprlviIsR~~sR~IlNe~evv~~l~~~Gf~V~v~e~~~~~s~~eQi~l~~~aDVlVGvHGAG-LTN~lFmppga~VIE 447 (550)
..-++++|.|++. +- .-+...|...|..|.+... .+.++. +.+++|||+|+.=|+. +...=|++||++||-
T Consensus 158 ~gk~vvVIG~s~i---VG-~p~A~lL~~~gAtVtv~hs-~t~~L~---~~~~~ADIVI~Avg~p~lI~~~~vk~GavVID 229 (288)
T 1b0a_A 158 FGLNAVVIGASNI---VG-RPMSMELLLAGCTTTVTHR-FTKNLR---HHVENADLLIVAVGKPGFIPGDWIKEGAIVID 229 (288)
T ss_dssp TTCEEEEECCCTT---TH-HHHHHHHHTTTCEEEEECS-SCSCHH---HHHHHCSEEEECSCCTTCBCTTTSCTTCEEEE
T ss_pred CCCEEEEECCChH---HH-HHHHHHHHHCCCeEEEEeC-CchhHH---HHhccCCEEEECCCCcCcCCHHHcCCCcEEEE
Confidence 3467899988753 11 1266777788999998863 334554 4578999999998876 555556799999999
Q ss_pred Ee
Q 008862 448 VI 449 (550)
Q Consensus 448 I~ 449 (550)
+-
T Consensus 230 Vg 231 (288)
T 1b0a_A 230 VG 231 (288)
T ss_dssp CC
T ss_pred cc
Confidence 83
No 10
>4b4u_A Bifunctional protein fold; oxidoreductase; HET: NAP; 1.45A {Acinetobacter baumannii atcc 19606} PDB: 4b4v_A* 4b4w_A*
Probab=58.25 E-value=22 Score=36.25 Aligned_cols=71 Identities=21% Similarity=0.377 Sum_probs=52.0
Q ss_pred CCEEEEEEcCCCccccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHhcCCeEEeech-hhhhhhhccCCCcEEEEE
Q 008862 370 KPKLVILSRNGSRAITNENSLVKMAEDIGFQVQVVRPDRTSELAKIYRALNSSDVMVGVHG-AAMTHFLFMKPGSVFIQV 448 (550)
Q Consensus 370 rprlviIsR~~sR~IlNe~evv~~l~~~Gf~V~v~e~~~~~s~~eQi~l~~~aDVlVGvHG-AGLTN~lFmppga~VIEI 448 (550)
.-++++|.|+.. -=.-+..+|.+.|..|.+... .+.++.+ ..++|||+|+.=| +++...=|.+||++||-+
T Consensus 179 Gk~vvViGRS~i----VGkPla~LL~~~~ATVTi~Hs-~T~dl~~---~~~~ADIvV~A~G~p~~i~~d~vk~GavVIDV 250 (303)
T 4b4u_A 179 GKHAVVVGRSAI----LGKPMAMMLLQANATVTICHS-RTQNLPE---LVKQADIIVGAVGKAELIQKDWIKQGAVVVDA 250 (303)
T ss_dssp TCEEEEECCCTT----THHHHHHHHHHTTCEEEEECT-TCSSHHH---HHHTCSEEEECSCSTTCBCGGGSCTTCEEEEC
T ss_pred CCEEEEEecccc----ccchHHHHHHhcCCEEEEecC-CCCCHHH---HhhcCCeEEeccCCCCccccccccCCCEEEEe
Confidence 456889988863 111356667778999998864 4556655 5789999998766 556666689999999997
No 11
>1jwq_A N-acetylmuramoyl-L-alanine amidase CWLV; open alpha-beta-alpha, hydrolase; 1.80A {Paenibacillus polymyxa} SCOP: c.56.5.6
Probab=54.53 E-value=16 Score=34.04 Aligned_cols=47 Identities=17% Similarity=0.285 Sum_probs=35.7
Q ss_pred HHHHHHHHc-CCEEEEEec-CCCCCHHHHHHHHh--cCCeEEeechhhhhh
Q 008862 389 SLVKMAEDI-GFQVQVVRP-DRTSELAKIYRALN--SSDVMVGVHGAAMTH 435 (550)
Q Consensus 389 evv~~l~~~-Gf~V~v~e~-~~~~s~~eQi~l~~--~aDVlVGvHGAGLTN 435 (550)
.|.+.|++. |++|+.... +...++.+.+++.+ .||++|++|--+..|
T Consensus 36 ~l~~~L~~~~G~~V~ltR~~D~~~~L~~R~~~an~~~adlfiSiH~Na~~~ 86 (179)
T 1jwq_A 36 KVESILKQNPKLEVVLTRSDDTFLELKQRVKVAENLKANVFVSIHANSSGS 86 (179)
T ss_dssp HHHHHHHTCTTEEEEESCSSSCCCCHHHHHHHHHHTTCSEEEEEEEECCSS
T ss_pred HHHHHHHhCCCCEEEEeCCCCCCCCHHHHHHHHHhhCCCEEEEEccCCCCC
Confidence 355666777 999987653 35578999999987 699999999766543
No 12
>3qay_A Endolysin; amidase A/B fold, lyase; 2.00A {Clostridium phage PHICD27}
Probab=51.23 E-value=21 Score=33.09 Aligned_cols=44 Identities=20% Similarity=0.326 Sum_probs=29.9
Q ss_pred HHHHHHHcCCEE-EEEecCCC-C----CHHHHHHHHh--cCCeEEeechhhh
Q 008862 390 LVKMAEDIGFQV-QVVRPDRT-S----ELAKIYRALN--SSDVMVGVHGAAM 433 (550)
Q Consensus 390 vv~~l~~~Gf~V-~v~e~~~~-~----s~~eQi~l~~--~aDVlVGvHGAGL 433 (550)
|.+.|++.|++| +++.-..+ . ++.+-+++.+ .||++|++|--+.
T Consensus 38 l~~~L~~~G~~V~v~ltR~d~~~~~~~~L~~R~~~An~~~aDlfISIH~Na~ 89 (180)
T 3qay_A 38 LADTFRKEGHKVDVIICPEKQFKTKNEEKSYKIPRVNSGGYDLLIELHLNAS 89 (180)
T ss_dssp HHHHHHHTTCEEEEECCCSSCCSSTTHHHHHHHHHHHHSCCSEEEEEEEECS
T ss_pred HHHHHHhcCCcceEEECCCCCccccccCHHHHHHHHHhcCCCEEEEeeeCCC
Confidence 456666779997 33322111 2 4888888886 5999999997654
No 13
>3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum}
Probab=49.74 E-value=62 Score=32.30 Aligned_cols=129 Identities=11% Similarity=0.040 Sum_probs=72.0
Q ss_pred HHHHHHHHcCCEEEEEecCCC--------CCHHHHHHHHhcCCeEEeech--h---hhh---hhhccCCCcEEEEEecCC
Q 008862 389 SLVKMAEDIGFQVQVVRPDRT--------SELAKIYRALNSSDVMVGVHG--A---AMT---HFLFMKPGSVFIQVIPLG 452 (550)
Q Consensus 389 evv~~l~~~Gf~V~v~e~~~~--------~s~~eQi~l~~~aDVlVGvHG--A---GLT---N~lFmppga~VIEI~P~g 452 (550)
.+++.++..|++|...+.... .++. +++..||+++-.=- . ++. .+-.|+||+.+|.+---+
T Consensus 136 ~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~l~---ell~~aDiV~l~~P~t~~t~~li~~~~l~~mk~gailIN~aRG~ 212 (290)
T 3gvx_A 136 RVAHLAKAFGMRVIAYTRSSVDQNVDVISESPA---DLFRQSDFVLIAIPLTDKTRGMVNSRLLANARKNLTIVNVARAD 212 (290)
T ss_dssp HHHHHHHHHTCEEEEECSSCCCTTCSEECSSHH---HHHHHCSEEEECCCCCTTTTTCBSHHHHTTCCTTCEEEECSCGG
T ss_pred HHHHHHHhhCcEEEEEeccccccccccccCChH---HHhhccCeEEEEeeccccchhhhhHHHHhhhhcCceEEEeehhc
Confidence 477888899999998875321 1343 45789999875332 1 221 123489999999884322
Q ss_pred CCcccccchHHHHh---hcCCceEEEEecCCCCcccccCCCCCCccCCCCcc---cccCcceeeeeecCCccEEEehHHH
Q 008862 453 TDWAAETYYGEPAR---KLGLKYIGYTILPRESSLYDQYDKNDPVLRDPSSV---NEKGWQYTKTIYLDGQNVRLNLRRF 526 (550)
Q Consensus 453 ~~~~~~~~Y~~~A~---~~Gl~Y~~y~i~~eEssL~~~y~~dh~v~~dP~~i---~~kgW~~~~~~yL~~QnV~lDi~rF 526 (550)
-..-..+++ .-++.+..-.+...|. . ||.+..|..+ |..||.. .+.+
T Consensus 213 -----~vd~~aL~~aL~~g~i~ga~lDV~~~EP-------~-~pL~~~~nvilTPHiag~~t--------------~e~~ 265 (290)
T 3gvx_A 213 -----VVSKPDMIGFLKERSDVWYLSDVWWNEP-------E-ITETNLRNAILSPHVAGGMS--------------GEIM 265 (290)
T ss_dssp -----GBCHHHHHHHHHHCTTCEEEESCCTTTT-------S-CCSCCCSSEEECCSCSSCBT--------------TBCC
T ss_pred -----ccCCcchhhhhhhccceEEeeccccCCc-------c-cchhhhhhhhcCccccCCcc--------------chHH
Confidence 111233333 3456776666654443 2 5555555432 5443421 2234
Q ss_pred HHHHHHHHHHHHhhccccccc
Q 008862 527 QKRLVRAYDYSINRISQNCHH 547 (550)
Q Consensus 527 ~~~L~~A~~~l~~~~~~~~~~ 547 (550)
.++.+.+.+.+.+..+-.++|
T Consensus 266 ~~~~~~~~~ni~~~~~~~~~~ 286 (290)
T 3gvx_A 266 DIAIQLAFENVRNFFEGEGHH 286 (290)
T ss_dssp HHHHHHHHHHHHHHTC-----
T ss_pred HHHHHHHHHHHHhhhcCCCcc
Confidence 567777778888777655544
No 14
>2c2x_A Methylenetetrahydrofolate dehydrogenase- methenyltetrahydrofolate cyclohydrolase; NADP; 2.0A {Mycobacterium tuberculosis} PDB: 2c2y_A
Probab=49.72 E-value=27 Score=35.20 Aligned_cols=72 Identities=19% Similarity=0.304 Sum_probs=51.2
Q ss_pred CCCEEEEEEcCCCccccCHHHHHHHHHHc--CCEEEEEecCCCCCHHHHHHHHhcCCeEEeechhh-hhhhhccCCCcEE
Q 008862 369 KKPKLVILSRNGSRAITNENSLVKMAEDI--GFQVQVVRPDRTSELAKIYRALNSSDVMVGVHGAA-MTHFLFMKPGSVF 445 (550)
Q Consensus 369 ~rprlviIsR~~sR~IlNe~evv~~l~~~--Gf~V~v~e~~~~~s~~eQi~l~~~aDVlVGvHGAG-LTN~lFmppga~V 445 (550)
..-++++|.|++. +.. -+...|... |..|.+..- .+.++ .+.+++|||+|+.-|+. +...=|++||++|
T Consensus 157 ~gk~vvVvG~s~i---VG~-p~A~lL~~~g~~atVtv~h~-~t~~L---~~~~~~ADIVI~Avg~p~~I~~~~vk~GavV 228 (281)
T 2c2x_A 157 AGAHVVVIGRGVT---VGR-PLGLLLTRRSENATVTLCHT-GTRDL---PALTRQADIVVAAVGVAHLLTADMVRPGAAV 228 (281)
T ss_dssp TTCEEEEECCCTT---THH-HHHHHHTSTTTCCEEEEECT-TCSCH---HHHHTTCSEEEECSCCTTCBCGGGSCTTCEE
T ss_pred CCCEEEEECCCcH---HHH-HHHHHHhcCCCCCEEEEEEC-chhHH---HHHHhhCCEEEECCCCCcccCHHHcCCCcEE
Confidence 3457899988752 111 255666677 889988752 23344 45588999999999876 6666678999999
Q ss_pred EEE
Q 008862 446 IQV 448 (550)
Q Consensus 446 IEI 448 (550)
|-+
T Consensus 229 IDV 231 (281)
T 2c2x_A 229 IDV 231 (281)
T ss_dssp EEC
T ss_pred EEc
Confidence 988
No 15
>3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A*
Probab=49.67 E-value=83 Score=31.73 Aligned_cols=94 Identities=15% Similarity=0.200 Sum_probs=61.8
Q ss_pred CEEEEEEcCCCccccCHHHHHHHHHH-cCCEEEEEecCCCCCHHHHHHHHhcCCeEEeechhhhh---h------hhccC
Q 008862 371 PKLVILSRNGSRAITNENSLVKMAED-IGFQVQVVRPDRTSELAKIYRALNSSDVMVGVHGAAMT---H------FLFMK 440 (550)
Q Consensus 371 prlviIsR~~sR~IlNe~evv~~l~~-~Gf~V~v~e~~~~~s~~eQi~l~~~aDVlVGvHGAGLT---N------~lFmp 440 (550)
.+|++++|+..| ....+++.+.+.+ .|..+...+. .++.+-.+.+..+|++|..-.+||. . .-+++
T Consensus 173 ~~v~v~nRt~~~-~~~a~~la~~~~~~~~~~v~~~~~---~~l~~~~~~l~~~DiIINaTp~Gm~~~~~~~~~~~~~~l~ 248 (312)
T 3t4e_A 173 KEIKLFNRKDDF-FEKAVAFAKRVNENTDCVVTVTDL---ADQHAFTEALASADILTNGTKVGMKPLENESLIGDVSLLR 248 (312)
T ss_dssp SEEEEEECSSTH-HHHHHHHHHHHHHHSSCEEEEEET---TCHHHHHHHHHHCSEEEECSSTTSTTSTTCCSCCCGGGSC
T ss_pred CEEEEEECCCch-HHHHHHHHHHhhhccCcceEEech---HhhhhhHhhccCceEEEECCcCCCCCCCCCcccCCHHHcC
Confidence 368888887433 3344556655544 4677766653 2332224567899999988888872 1 13567
Q ss_pred CCcEEEEEecCCCCcccccchHHHHhhcCCce
Q 008862 441 PGSVFIQVIPLGTDWAAETYYGEPARKLGLKY 472 (550)
Q Consensus 441 pga~VIEI~P~g~~~~~~~~Y~~~A~~~Gl~Y 472 (550)
++.+|++++--. ..+.|-..|+..|.+.
T Consensus 249 ~~~~v~D~vY~P----~~T~ll~~A~~~G~~~ 276 (312)
T 3t4e_A 249 PELLVTECVYNP----HMTKLLQQAQQAGCKT 276 (312)
T ss_dssp TTCEEEECCCSS----SSCHHHHHHHHTTCEE
T ss_pred CCCEEEEeccCC----CCCHHHHHHHHCCCeE
Confidence 889999987331 3567889999999875
No 16
>3ne8_A N-acetylmuramoyl-L-alanine amidase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.24A {Bartonella henselae}
Probab=47.93 E-value=22 Score=34.61 Aligned_cols=46 Identities=15% Similarity=0.211 Sum_probs=34.1
Q ss_pred HHHHHHHcC-CEEEEEec-CCCCCHHHHHHHHh--cCCeEEeechhhhhh
Q 008862 390 LVKMAEDIG-FQVQVVRP-DRTSELAKIYRALN--SSDVMVGVHGAAMTH 435 (550)
Q Consensus 390 vv~~l~~~G-f~V~v~e~-~~~~s~~eQi~l~~--~aDVlVGvHGAGLTN 435 (550)
|.+.|++.| ++|+.... +...++.+.+++.+ .||++|++|--+..+
T Consensus 39 l~~~L~~~g~~~V~~tR~~D~~~~l~~R~~~An~~~adlfiSiH~Na~~~ 88 (234)
T 3ne8_A 39 LRDELQKGSHTIVALTRDSDIFLRLSERVKKAQEFDADLFISIHADTIDV 88 (234)
T ss_dssp HHHHHHHSSSEEEEESCSSSCCCCHHHHHHHHHHTTCSEEEEEECCCCSC
T ss_pred HHHHHHhCCCcEEEEeCCCCCcCCHHHHHHHHHhhCCCEEEEEecCCCCC
Confidence 344555667 88887543 35578999999987 799999999766543
No 17
>2amj_A Modulator of drug activity B; oxidoreductase, menadione, DT-diaphorase, montreal-kingston structural genomics initiative, BSGI; 1.80A {Escherichia coli} PDB: 2b3d_A*
Probab=44.20 E-value=35 Score=31.81 Aligned_cols=39 Identities=21% Similarity=0.284 Sum_probs=31.8
Q ss_pred HHHHHHHHcCCEEEEEecCCCCCHHHHHHHHhcCCeEEe
Q 008862 389 SLVKMAEDIGFQVQVVRPDRTSELAKIYRALNSSDVMVG 427 (550)
Q Consensus 389 evv~~l~~~Gf~V~v~e~~~~~s~~eQi~l~~~aDVlVG 427 (550)
++++.+++.|.+|.+++..+..++.+..+.+..||++|=
T Consensus 38 ~~~~~~~~~g~~v~~~dL~~~~d~~~~~~~l~~AD~iV~ 76 (204)
T 2amj_A 38 VADGTLRDLGHDVRIVRADSDYDVKAEVQNFLWADVVIW 76 (204)
T ss_dssp HHHHHHHHTTCEEEEEESSSCCCHHHHHHHHHHCSEEEE
T ss_pred HHHHHHHHcCCEEEEEeCCccccHHHHHHHHHhCCEEEE
Confidence 455666667999999887666789999999999999874
No 18
>3fni_A Putative diflavin flavoprotein A 3; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.30A {Nostoc SP} PDB: 2klb_A
Probab=43.81 E-value=23 Score=31.71 Aligned_cols=55 Identities=15% Similarity=0.249 Sum_probs=40.0
Q ss_pred CCCEEEEEEcCCC-ccccCHHHHHHHHHHcCCEEEEEecCCCC-CHHHHHHHHhcCCeEE
Q 008862 369 KKPKLVILSRNGS-RAITNENSLVKMAEDIGFQVQVVRPDRTS-ELAKIYRALNSSDVMV 426 (550)
Q Consensus 369 ~rprlviIsR~~s-R~IlNe~evv~~l~~~Gf~V~v~e~~~~~-s~~eQi~l~~~aDVlV 426 (550)
++.-|+|-|..|+ +++.+ .|.+.+++.|.+|.+++.. .. +..+.+..+..+|.+|
T Consensus 5 ~kv~IvY~S~~GnT~~iA~--~ia~~l~~~g~~v~~~~~~-~~~~~~~~~~~~~~~d~ii 61 (159)
T 3fni_A 5 TSIGVFYVSEYGYSDRLAQ--AIINGITKTGVGVDVVDLG-AAVDLQELRELVGRCTGLV 61 (159)
T ss_dssp CEEEEEECTTSTTHHHHHH--HHHHHHHHTTCEEEEEESS-SCCCHHHHHHHHHTEEEEE
T ss_pred CEEEEEEECCChHHHHHHH--HHHHHHHHCCCeEEEEECc-CcCCHHHHHHHHHhCCEEE
Confidence 3556677788775 77665 4677777889999888763 45 7888877788888654
No 19
>3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A*
Probab=42.78 E-value=45 Score=33.04 Aligned_cols=91 Identities=14% Similarity=0.120 Sum_probs=56.3
Q ss_pred EEEEEEcCCC-ccccCHHHHHHHHHHcCC-EEEEEecC----C-------CCCHHHHHHHHhcCCeEEeechhhhhhh--
Q 008862 372 KLVILSRNGS-RAITNENSLVKMAEDIGF-QVQVVRPD----R-------TSELAKIYRALNSSDVMVGVHGAAMTHF-- 436 (550)
Q Consensus 372 rlviIsR~~s-R~IlNe~evv~~l~~~Gf-~V~v~e~~----~-------~~s~~eQi~l~~~aDVlVGvHGAGLTN~-- 436 (550)
++++|.=.+. | .++..|.+.|+ +|.++.-. + ..++.+..+.+..+||+|..-.+|+..-
T Consensus 119 ~vlvlGaGg~g~------aia~~L~~~G~~~v~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~aDiVInaTp~Gm~~~~~ 192 (277)
T 3don_A 119 YILILGAGGASK------GIANELYKIVRPTLTVANRTMSRFNNWSLNINKINLSHAESHLDEFDIIINTTPAGMNGNTD 192 (277)
T ss_dssp CEEEECCSHHHH------HHHHHHHTTCCSCCEEECSCGGGGTTCCSCCEEECHHHHHHTGGGCSEEEECCC-------C
T ss_pred EEEEECCcHHHH------HHHHHHHHCCCCEEEEEeCCHHHHHHHHHhcccccHhhHHHHhcCCCEEEECccCCCCCCCc
Confidence 4666654321 3 36677777887 67766421 0 0145665566889999998888887432
Q ss_pred -----hccCCCcEEEEEecCCCCcccccchHHHHhhcCCce
Q 008862 437 -----LFMKPGSVFIQVIPLGTDWAAETYYGEPARKLGLKY 472 (550)
Q Consensus 437 -----lFmppga~VIEI~P~g~~~~~~~~Y~~~A~~~Gl~Y 472 (550)
-+++++++|+.++--. ..+.+-..|+..|++.
T Consensus 193 ~~l~~~~l~~~~~V~D~vY~P----~~T~ll~~A~~~G~~~ 229 (277)
T 3don_A 193 SVISLNRLASHTLVSDIVYNP----YKTPILIEAEQRGNPI 229 (277)
T ss_dssp CSSCCTTCCSSCEEEESCCSS----SSCHHHHHHHHTTCCE
T ss_pred CCCCHHHcCCCCEEEEecCCC----CCCHHHHHHHHCcCEE
Confidence 2467899999985221 2355788899999876
No 20
>3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum}
Probab=42.42 E-value=64 Score=32.11 Aligned_cols=91 Identities=21% Similarity=0.218 Sum_probs=58.2
Q ss_pred CCEEEEEEcCCC-ccccCHHHHHHHHHHcCC-EEEEEecCC-----------CCCHHHHHHHHhcCCeEEeechhhhhh-
Q 008862 370 KPKLVILSRNGS-RAITNENSLVKMAEDIGF-QVQVVRPDR-----------TSELAKIYRALNSSDVMVGVHGAAMTH- 435 (550)
Q Consensus 370 rprlviIsR~~s-R~IlNe~evv~~l~~~Gf-~V~v~e~~~-----------~~s~~eQi~l~~~aDVlVGvHGAGLTN- 435 (550)
.-+++++.-.+. | .++.+|.+.|. +|.++.-.. ..++.+.-+ + .+|++|..-.+||..
T Consensus 122 ~k~vlvlGaGGaar------aia~~L~~~G~~~v~v~nRt~~ka~~La~~~~~~~~~~l~~-l-~~DivInaTp~Gm~~~ 193 (282)
T 3fbt_A 122 NNICVVLGSGGAAR------AVLQYLKDNFAKDIYVVTRNPEKTSEIYGEFKVISYDELSN-L-KGDVIINCTPKGMYPK 193 (282)
T ss_dssp TSEEEEECSSTTHH------HHHHHHHHTTCSEEEEEESCHHHHHHHCTTSEEEEHHHHTT-C-CCSEEEECSSTTSTTS
T ss_pred CCEEEEECCcHHHH------HHHHHHHHcCCCEEEEEeCCHHHHHHHHHhcCcccHHHHHh-c-cCCEEEECCccCccCC
Confidence 346777776554 4 46777778887 777765210 011222112 3 899999888887642
Q ss_pred -------hhccCCCcEEEEEecCCCCcccccchHHHHhhcCCce
Q 008862 436 -------FLFMKPGSVFIQVIPLGTDWAAETYYGEPARKLGLKY 472 (550)
Q Consensus 436 -------~lFmppga~VIEI~P~g~~~~~~~~Y~~~A~~~Gl~Y 472 (550)
.-+++++.+|++++=-. ..+.+-..|+..|.+.
T Consensus 194 ~~~~pi~~~~l~~~~~v~DlvY~P----~~T~ll~~A~~~G~~~ 233 (282)
T 3fbt_A 194 EGESPVDKEVVAKFSSAVDLIYNP----VETLFLKYARESGVKA 233 (282)
T ss_dssp TTCCSSCHHHHTTCSEEEESCCSS----SSCHHHHHHHHTTCEE
T ss_pred CccCCCCHHHcCCCCEEEEEeeCC----CCCHHHHHHHHCcCeE
Confidence 22467899999986221 3567889999999875
No 21
>2q62_A ARSH; alpha/beta, flavoprotein; 1.80A {Sinorhizobium meliloti}
Probab=42.10 E-value=50 Score=32.06 Aligned_cols=57 Identities=19% Similarity=0.256 Sum_probs=37.6
Q ss_pred CCCEEEEEEcCCCccccCHH----HHHHHHHHcCCEEEEEecCCCCC-----------HHHHHHHHhcCCeEEe
Q 008862 369 KKPKLVILSRNGSRAITNEN----SLVKMAEDIGFQVQVVRPDRTSE-----------LAKIYRALNSSDVMVG 427 (550)
Q Consensus 369 ~rprlviIsR~~sR~IlNe~----evv~~l~~~Gf~V~v~e~~~~~s-----------~~eQi~l~~~aDVlVG 427 (550)
...+|++|.=+. |.=-|-. .+++.+++.|.+|.+++.. +++ +.+.++.+..||.+|=
T Consensus 33 ~~mkIliI~GS~-r~~s~t~~La~~~~~~l~~~g~eve~idL~-~~pl~~~d~~~~d~~~~l~~~i~~AD~iI~ 104 (247)
T 2q62_A 33 HRPRILILYGSL-RTVSYSRLLAEEARRLLEFFGAEVKVFDPS-GLPLPDAAPVSHPKVQELRELSIWSEGQVW 104 (247)
T ss_dssp SCCEEEEEECCC-CSSCHHHHHHHHHHHHHHHTTCEEEECCCT-TCCCTTSSCTTSHHHHHHHHHHHHCSEEEE
T ss_pred CCCeEEEEEccC-CCCCHHHHHHHHHHHHHhhCCCEEEEEEhh-cCCCCcCCCCCCHHHHHHHHHHHHCCEEEE
Confidence 356888886322 3222322 3455566679999988753 345 7888899999999873
No 22
>1xov_A PLY protein, plypsa; alpha/beta hydrolase, multi-domain, hydrolase; 1.80A {Listeria phage psa} SCOP: b.34.11.4 c.56.5.6
Probab=40.41 E-value=17 Score=37.19 Aligned_cols=43 Identities=28% Similarity=0.309 Sum_probs=28.8
Q ss_pred HHHHHHHcCCEEE-E-Eec--CCCCCHHHHHHHHh--cCCeEEeechhh
Q 008862 390 LVKMAEDIGFQVQ-V-VRP--DRTSELAKIYRALN--SSDVMVGVHGAA 432 (550)
Q Consensus 390 vv~~l~~~Gf~V~-v-~e~--~~~~s~~eQi~l~~--~aDVlVGvHGAG 432 (550)
|.+.|++.|++|. + +.- +...++.+.+++.+ .||++|++|--+
T Consensus 46 l~~~L~~~G~~V~V~m~tR~~D~~~~L~~R~~~An~~~ADlfISIH~Na 94 (326)
T 1xov_A 46 ASDELKREGHNVKTFIDRTSTTQSANLNKIVNWHNANPADVHISVHLNA 94 (326)
T ss_dssp HHHHHHHTTCEEEEEEESSCCSHHHHHHHHHHHHHHSCCSEEEEEEEEC
T ss_pred HHHHHHhCCCceEEEEecCCCCccCCHHHHHHHHHhcCCCEEEEEeccC
Confidence 4455566799963 3 321 12246888888887 499999999665
No 23
>3rpe_A MDAB, modulator of drug activity B; structural genomics, center for structural genomics of infec diseases, csgid, flavodoxin-like fold; HET: FAD; 1.10A {Yersinia pestis}
Probab=38.38 E-value=36 Score=32.67 Aligned_cols=39 Identities=13% Similarity=0.189 Sum_probs=32.5
Q ss_pred HHHHHHHHcCCEEEEEecCCCCCHHHHHHHHhcCCeEEe
Q 008862 389 SLVKMAEDIGFQVQVVRPDRTSELAKIYRALNSSDVMVG 427 (550)
Q Consensus 389 evv~~l~~~Gf~V~v~e~~~~~s~~eQi~l~~~aDVlVG 427 (550)
++++.+++.|.+|.+++..+..++.+..+.+..||++|=
T Consensus 51 ~~~~~l~~~g~ev~~~dL~~~~Dv~~~~~~l~~aD~iv~ 89 (218)
T 3rpe_A 51 VAADFLRESGHQVKITTVDQGYDIESEIENYLWADTIIY 89 (218)
T ss_dssp HHHHHHHHTTCCEEEEEGGGCCCHHHHHHHHHHCSEEEE
T ss_pred HHHHHHhhCCCEEEEEECCCccCHHHHHHHHHhCCEEEE
Confidence 566677778999999887667789999999999999874
No 24
>1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A*
Probab=34.27 E-value=34 Score=34.97 Aligned_cols=76 Identities=17% Similarity=0.180 Sum_probs=51.5
Q ss_pred CCCEEEEEEcCCCccccCHHHHHHHHHHcCCEEEEEecC---------------CC------CCHHHHHHHHhcCCeEEe
Q 008862 369 KKPKLVILSRNGSRAITNENSLVKMAEDIGFQVQVVRPD---------------RT------SELAKIYRALNSSDVMVG 427 (550)
Q Consensus 369 ~rprlviIsR~~sR~IlNe~evv~~l~~~Gf~V~v~e~~---------------~~------~s~~eQi~l~~~aDVlVG 427 (550)
..-++++|.|... +.. -++..|...|..|.+.+-. .. .+..+-.+.+++|||+|+
T Consensus 176 ~gk~vvVIG~G~i---VG~-~~A~~L~~~gAtVtv~nR~~~~l~~ra~~la~~~~~~t~~~~t~~~~L~e~l~~ADIVIs 251 (320)
T 1edz_A 176 YGKKCIVINRSEI---VGR-PLAALLANDGATVYSVDVNNIQKFTRGESLKLNKHHVEDLGEYSEDLLKKCSLDSDVVIT 251 (320)
T ss_dssp TTCEEEEECCCTT---THH-HHHHHHHTTSCEEEEECSSEEEEEESCCCSSCCCCEEEEEEECCHHHHHHHHHHCSEEEE
T ss_pred CCCEEEEECCCcc---hHH-HHHHHHHHCCCEEEEEeCchHHHHhHHHHHhhhcccccccccccHhHHHHHhccCCEEEE
Confidence 3557899988742 111 2567777789998877321 00 112566778999999999
Q ss_pred echhh--hhhhhccCCCcEEEEE
Q 008862 428 VHGAA--MTHFLFMKPGSVFIQV 448 (550)
Q Consensus 428 vHGAG--LTN~lFmppga~VIEI 448 (550)
.-|+- +-..=|++||++||-+
T Consensus 252 Atg~p~~vI~~e~vk~GavVIDV 274 (320)
T 1edz_A 252 GVPSENYKFPTEYIKEGAVCINF 274 (320)
T ss_dssp CCCCTTCCBCTTTSCTTEEEEEC
T ss_pred CCCCCcceeCHHHcCCCeEEEEc
Confidence 99985 2334456899999888
No 25
>3hly_A Flavodoxin-like domain; Q5MZP6_SYNP6, flavoprotein, DFA1, SNR135D, NESG, structural genomics, PSI-2; 2.40A {Synechococcus elongatus pcc 6301}
Probab=33.64 E-value=47 Score=29.57 Aligned_cols=52 Identities=19% Similarity=0.255 Sum_probs=36.8
Q ss_pred EEEEEEcCCC-ccccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHhcCCeEE
Q 008862 372 KLVILSRNGS-RAITNENSLVKMAEDIGFQVQVVRPDRTSELAKIYRALNSSDVMV 426 (550)
Q Consensus 372 rlviIsR~~s-R~IlNe~evv~~l~~~Gf~V~v~e~~~~~s~~eQi~l~~~aDVlV 426 (550)
-|+|-|..|+ +++.+ .|.+.+++.|.+|.+.+. ...+..+.+.-+.++|.+|
T Consensus 4 ~IvY~S~tGnT~~~A~--~ia~~l~~~g~~v~~~~~-~~~~~~~~~~~~~~~d~ii 56 (161)
T 3hly_A 4 LIGYLSDYGYSDRLSQ--AIGRGLVKTGVAVEMVDL-RAVDPQELIEAVSSARGIV 56 (161)
T ss_dssp EEEECTTSTTHHHHHH--HHHHHHHHTTCCEEEEET-TTCCHHHHHHHHHHCSEEE
T ss_pred EEEEECCChHHHHHHH--HHHHHHHhCCCeEEEEEC-CCCCHHHHHHHHHhCCEEE
Confidence 4667777765 66554 466777778999888875 3567777777778888654
No 26
>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus}
Probab=32.90 E-value=1e+02 Score=30.49 Aligned_cols=56 Identities=18% Similarity=0.272 Sum_probs=39.5
Q ss_pred HHHHHHhcCCeEEeechhhhhh--------hhccCCCcEEEEEecCCCCcccccchHHHHhhcCCceE
Q 008862 414 KIYRALNSSDVMVGVHGAAMTH--------FLFMKPGSVFIQVIPLGTDWAAETYYGEPARKLGLKYI 473 (550)
Q Consensus 414 eQi~l~~~aDVlVGvHGAGLTN--------~lFmppga~VIEI~P~g~~~~~~~~Y~~~A~~~Gl~Y~ 473 (550)
+-.+.+..+||+|..-++|+.- .-++++|++|+.+.-. ...+.+...|+..|.+++
T Consensus 197 ~~~~~~~~aDivIn~t~~~~~~~~~~~~i~~~~l~~~~~v~D~~y~----P~~T~ll~~A~~~G~~~v 260 (297)
T 2egg_A 197 EAETRLAEYDIIINTTSVGMHPRVEVQPLSLERLRPGVIVSDIIYN----PLETKWLKEAKARGARVQ 260 (297)
T ss_dssp HHHHTGGGCSEEEECSCTTCSSCCSCCSSCCTTCCTTCEEEECCCS----SSSCHHHHHHHHTTCEEE
T ss_pred HHHhhhccCCEEEECCCCCCCCCCCCCCCCHHHcCCCCEEEEcCCC----CCCCHHHHHHHHCcCEEE
Confidence 3345678899999999999841 1246789999998632 123447788899998764
No 27
>2fzv_A Putative arsenical resistance protein; flavin binding protein, structural genomics, PSI, protein ST initiative; 1.70A {Shigella flexneri 2A} SCOP: c.23.5.4
Probab=31.17 E-value=1.2e+02 Score=30.06 Aligned_cols=56 Identities=13% Similarity=0.173 Sum_probs=38.3
Q ss_pred CCCEEEEEEcC---CC--ccccCHHHHHHHHHHcCCEEEEEecCCCCC------------HHHHHHHHhcCCeEEe
Q 008862 369 KKPKLVILSRN---GS--RAITNENSLVKMAEDIGFQVQVVRPDRTSE------------LAKIYRALNSSDVMVG 427 (550)
Q Consensus 369 ~rprlviIsR~---~s--R~IlNe~evv~~l~~~Gf~V~v~e~~~~~s------------~~eQi~l~~~aDVlVG 427 (550)
..++|++|.=+ ++ +++++ ++++.+++.|.+|.+++.. +++ +.+.++.+..||.+|=
T Consensus 57 ~~mKILiI~GS~R~~S~T~~La~--~~~~~l~~~G~eveiidL~-dlpl~~~d~~~~~d~v~~l~e~I~~ADgiV~ 129 (279)
T 2fzv_A 57 PPVRILLLYGSLRARSFSRLAVE--EAARLLQFFGAETRIFDPS-DLPLPDQVQSDDHPAVKELRALSEWSEGQVW 129 (279)
T ss_dssp SCCEEEEEESCCSSSCHHHHHHH--HHHHHHHHTTCEEEEBCCT-TCCCTTTSGGGCCHHHHHHHHHHHHCSEEEE
T ss_pred CCCEEEEEEeCCCCCCHHHHHHH--HHHHHHhhCCCEEEEEehh-cCCCCccCccCCCHHHHHHHHHHHHCCeEEE
Confidence 45788888632 21 34433 4556667779999998753 344 7778899999999873
No 28
>1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii}
Probab=30.04 E-value=3.1e+02 Score=27.09 Aligned_cols=132 Identities=17% Similarity=0.145 Sum_probs=0.0
Q ss_pred HHHHHHHHcCCEEEEEecCCCCCHHHHH--------HHHhcCCeEEeechhhh-hhhhc-------cCCCcEEEEEecCC
Q 008862 389 SLVKMAEDIGFQVQVVRPDRTSELAKIY--------RALNSSDVMVGVHGAAM-THFLF-------MKPGSVFIQVIPLG 452 (550)
Q Consensus 389 evv~~l~~~Gf~V~v~e~~~~~s~~eQi--------~l~~~aDVlVGvHGAGL-TN~lF-------mppga~VIEI~P~g 452 (550)
.+++.++..|++|.+.+........... +++..||+++-.-...- |.-++ |+||+.+|.+---+
T Consensus 156 ~~A~~l~~~G~~V~~~d~~~~~~~~~~~g~~~~~l~ell~~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lin~arg~ 235 (307)
T 1wwk_A 156 QVAKIANALGMNILLYDPYPNEERAKEVNGKFVDLETLLKESDVVTIHVPLVESTYHLINEERLKLMKKTAILINTSRGP 235 (307)
T ss_dssp HHHHHHHHTTCEEEEECSSCCHHHHHHTTCEECCHHHHHHHCSEEEECCCCSTTTTTCBCHHHHHHSCTTCEEEECSCGG
T ss_pred HHHHHHHHCCCEEEEECCCCChhhHhhcCccccCHHHHHhhCCEEEEecCCChHHhhhcCHHHHhcCCCCeEEEECCCCc
Q ss_pred CCcccccchHHHHhhcCCceEEEEecCCCCcccccCCCCCCccCCCCcc---cccCcceeeeeecCCccEEEehHHHHHH
Q 008862 453 TDWAAETYYGEPARKLGLKYIGYTILPRESSLYDQYDKNDPVLRDPSSV---NEKGWQYTKTIYLDGQNVRLNLRRFQKR 529 (550)
Q Consensus 453 ~~~~~~~~Y~~~A~~~Gl~Y~~y~i~~eEssL~~~y~~dh~v~~dP~~i---~~kgW~~~~~~yL~~QnV~lDi~rF~~~ 529 (550)
.....--....+.-++......+...|.- +.+||.++.|..+ |..++.. +...+.
T Consensus 236 --~vd~~aL~~aL~~g~i~ga~lDv~~~eP~-----~~~~~L~~~~nviltPh~~~~t~---------------~~~~~~ 293 (307)
T 1wwk_A 236 --VVDTNALVKALKEGWIAGAGLDVFEEEPL-----PKDHPLTKFDNVVLTPHIGASTV---------------EAQERA 293 (307)
T ss_dssp --GBCHHHHHHHHHHTSSSEEEESCCSSSSC-----CTTCGGGGCTTEEECSSCTTCBH---------------HHHHHH
T ss_pred --ccCHHHHHHHHHhCCCcEEEEecCCCCCC-----CCCChHHhCCCEEECCccccCcH---------------HHHHHH
Q ss_pred HHHHHHHHHhhcc
Q 008862 530 LVRAYDYSINRIS 542 (550)
Q Consensus 530 L~~A~~~l~~~~~ 542 (550)
...+.+.+.++.+
T Consensus 294 ~~~~~~nl~~~~~ 306 (307)
T 1wwk_A 294 GVEVAEKVVKILK 306 (307)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHc
No 29
>2f9f_A First mannosyl transferase (WBAZ-1); alpha-beta protein, structural genomics, PSI, protein struct initiative; 1.80A {Archaeoglobus fulgidus} SCOP: c.87.1.8
Probab=29.22 E-value=1.7e+02 Score=25.49 Aligned_cols=38 Identities=5% Similarity=-0.064 Sum_probs=28.0
Q ss_pred CCCCCCEEEEEEcCCCccccCHHHHHHHHHHc-CCEEEEEe
Q 008862 366 DQSKKPKLVILSRNGSRAITNENSLVKMAEDI-GFQVQVVR 405 (550)
Q Consensus 366 ~~~~rprlviIsR~~sR~IlNe~evv~~l~~~-Gf~V~v~e 405 (550)
-+.+++.++++.|-. ..-|.+.++++++++ .+.++++-
T Consensus 19 ~~~~~~~i~~~G~~~--~~Kg~~~li~a~~~l~~~~l~i~G 57 (177)
T 2f9f_A 19 FKCYGDFWLSVNRIY--PEKRIELQLEVFKKLQDEKLYIVG 57 (177)
T ss_dssp CCCCCSCEEEECCSS--GGGTHHHHHHHHHHCTTSCEEEEB
T ss_pred cCCCCCEEEEEeccc--cccCHHHHHHHHHhCCCcEEEEEe
Confidence 356788899998875 345888899999886 56666554
No 30
>1mkz_A Molybdenum cofactor biosynthesis protein B; MAD, WEAK anomalous signal, molybdopterin synthesis, structural genomics, PSI; HET: MSE; 1.60A {Escherichia coli} SCOP: c.57.1.1 PDB: 1r2k_B
Probab=28.96 E-value=97 Score=28.25 Aligned_cols=68 Identities=15% Similarity=0.142 Sum_probs=46.0
Q ss_pred CCCCEEEEEEcCCC-cccc--CHHHHHHHHHHcCCEEEEEe--cCCCCCHHHHHHHHh---cCCeEEeechhhhhh
Q 008862 368 SKKPKLVILSRNGS-RAIT--NENSLVKMAEDIGFQVQVVR--PDRTSELAKIYRALN---SSDVMVGVHGAAMTH 435 (550)
Q Consensus 368 ~~rprlviIsR~~s-R~Il--Ne~evv~~l~~~Gf~V~v~e--~~~~~s~~eQi~l~~---~aDVlVGvHGAGLTN 435 (550)
-++||+-||+=... -++. |-.-+.+.|++.|+++.... ++..-.+.+.++... .+|++|.-=|.|.|.
T Consensus 8 ~~~~~v~Ii~tGdE~g~i~D~n~~~l~~~L~~~G~~v~~~~iv~Dd~~~i~~~l~~a~~~~~~DlVittGG~g~~~ 83 (172)
T 1mkz_A 8 FIPTRIAILTVSNRRGEEDDTSGHYLRDSAQEAGHHVVDKAIVKENRYAIRAQVSAWIASDDVQVVLITGGTGLTE 83 (172)
T ss_dssp CCCCEEEEEEECSSCCGGGCHHHHHHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHHSSSCCEEEEESCCSSST
T ss_pred CCCCEEEEEEEeCCCCcccCccHHHHHHHHHHCCCeEeEEEEeCCCHHHHHHHHHHHHhcCCCCEEEeCCCCCCCC
Confidence 45788888865443 2344 44567899999999886433 333335666665543 399999999998775
No 31
>1nw9_B Caspase 9, apoptosis-related cysteine protease; XIAP, caspase inhibition, caspase activation, dimerization; 2.40A {Homo sapiens} SCOP: c.17.1.1 PDB: 1jxq_A* 2ar9_A
Probab=28.95 E-value=38 Score=33.42 Aligned_cols=20 Identities=20% Similarity=0.248 Sum_probs=16.3
Q ss_pred CHHHHHHHHHHcCCEEEEEe
Q 008862 386 NENSLVKMAEDIGFQVQVVR 405 (550)
Q Consensus 386 Ne~evv~~l~~~Gf~V~v~e 405 (550)
..+.|.+.++++||+|.+.+
T Consensus 47 D~~~L~~~f~~LgF~V~~~~ 66 (277)
T 1nw9_B 47 DCEKLRRRFSSLHFMVEVKG 66 (277)
T ss_dssp HHHHHHHHHHHTTEEEEEEE
T ss_pred HHHHHHHHHHHCCCEEEEEc
Confidence 44568899999999998876
No 32
>3l4e_A Uncharacterized peptidase LMO0363; hypothetical protein LMO0363, csgid, similar to peptidase E, hydrolase, protease, serine protease; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=28.67 E-value=1.3e+02 Score=28.30 Aligned_cols=65 Identities=15% Similarity=0.178 Sum_probs=46.5
Q ss_pred CCEEEEEEcCCC--ccccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHhcCCeEEeechhhhhh
Q 008862 370 KPKLVILSRNGS--RAITNENSLVKMAEDIGFQVQVVRPDRTSELAKIYRALNSSDVMVGVHGAAMTH 435 (550)
Q Consensus 370 rprlviIsR~~s--R~IlNe~evv~~l~~~Gf~V~v~e~~~~~s~~eQi~l~~~aDVlVGvHGAGLTN 435 (550)
.+|++||.=... ..=.|.+.+.++++++|+++.+++.. ..+.++..+.+.+||.++=.-|.-.+=
T Consensus 27 ~~~i~~Ip~As~~~~~~~~~~s~~~a~~~lG~~v~~~~i~-~~~~~~~~~~l~~ad~I~l~GG~~~~l 93 (206)
T 3l4e_A 27 GKTVTFIPTASTVEEVTFYVEAGKKALESLGLLVEELDIA-TESLGEITTKLRKNDFIYVTGGNTFFL 93 (206)
T ss_dssp TCEEEEECGGGGGCSCCHHHHHHHHHHHHTTCEEEECCTT-TSCHHHHHHHHHHSSEEEECCSCHHHH
T ss_pred CCEEEEECCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEec-CCChHHHHHHHHhCCEEEECCCCHHHH
Confidence 589999963321 22247788999999999999887542 356677778899999988655655543
No 33
>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A
Probab=28.54 E-value=1.3e+02 Score=29.66 Aligned_cols=87 Identities=18% Similarity=0.168 Sum_probs=53.8
Q ss_pred EEEEEEcCCCccccCHHHHHHHHHHc--CCEEEEEecCCCCCHHHHHHHHhcCCeEEeechhhhhh-------hhccCCC
Q 008862 372 KLVILSRNGSRAITNENSLVKMAEDI--GFQVQVVRPDRTSELAKIYRALNSSDVMVGVHGAAMTH-------FLFMKPG 442 (550)
Q Consensus 372 rlviIsR~~sR~IlNe~evv~~l~~~--Gf~V~v~e~~~~~s~~eQi~l~~~aDVlVGvHGAGLTN-------~lFmppg 442 (550)
++++++|+.. ..+++.+.+... +.++...+. .++. +.+..+|++|..-.+|+.. .-+++++
T Consensus 153 ~v~i~~R~~~----~a~~la~~~~~~~~~~~i~~~~~---~~l~---~~l~~~DiVInaTp~Gm~~~~~~pi~~~~l~~~ 222 (283)
T 3jyo_A 153 KLQVADLDTS----RAQALADVINNAVGREAVVGVDA---RGIE---DVIAAADGVVNATPMGMPAHPGTAFDVSCLTKD 222 (283)
T ss_dssp EEEEECSSHH----HHHHHHHHHHHHHTSCCEEEECS---TTHH---HHHHHSSEEEECSSTTSTTSCSCSSCGGGCCTT
T ss_pred EEEEEECCHH----HHHHHHHHHHhhcCCceEEEcCH---HHHH---HHHhcCCEEEECCCCCCCCCCCCCCCHHHhCCC
Confidence 4666655432 234455555443 344544432 1233 4567899999888877653 2357788
Q ss_pred cEEEEEecCCCCcccccchHHHHhhcCCce
Q 008862 443 SVFIQVIPLGTDWAAETYYGEPARKLGLKY 472 (550)
Q Consensus 443 a~VIEI~P~g~~~~~~~~Y~~~A~~~Gl~Y 472 (550)
.+|++++--. ..+.+-..|+..|.+.
T Consensus 223 ~~v~DlvY~P----~~T~ll~~A~~~G~~~ 248 (283)
T 3jyo_A 223 HWVGDVVYMP----IETELLKAARALGCET 248 (283)
T ss_dssp CEEEECCCSS----SSCHHHHHHHHHTCCE
T ss_pred CEEEEecCCC----CCCHHHHHHHHCcCeE
Confidence 9999986321 2567888899999875
No 34
>1i1q_B Anthranilate synthase component II; tryptophan biosynthesis, lyase; HET: TRP; 1.90A {Salmonella typhimurium} SCOP: c.23.16.1 PDB: 1i7q_B 1i7s_B*
Probab=27.05 E-value=55 Score=29.92 Aligned_cols=52 Identities=15% Similarity=0.222 Sum_probs=33.8
Q ss_pred CEEEEEEcCCCccccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHhcCC---eEEee
Q 008862 371 PKLVILSRNGSRAITNENSLVKMAEDIGFQVQVVRPDRTSELAKIYRALNSSD---VMVGV 428 (550)
Q Consensus 371 prlviIsR~~sR~IlNe~evv~~l~~~Gf~V~v~e~~~~~s~~eQi~l~~~aD---VlVGv 428 (550)
|+++||+-.++ + ...+++++++.|.+++++... .+.++..+.+...+ ++|+.
T Consensus 1 ~~i~iiDn~~s--~--~~~i~~~l~~~G~~~~v~~~~--~~~~~i~~~l~~~~~~~iil~g 55 (192)
T 1i1q_B 1 ADILLLDNIDS--F--TWNLADQLRTNGHNVVIYRNH--IPAQTLIDRLATMKNPVLMLSP 55 (192)
T ss_dssp CEEEEEECSCS--S--HHHHHHHHHHTTCEEEEEETT--SCSHHHHHHHTTCSSEEEEECC
T ss_pred CcEEEEECCcc--H--HHHHHHHHHHCCCeEEEEECC--CCHHHHHHHhhhccCCeEEECC
Confidence 57889983332 2 235689999999999988753 34555445555444 67655
No 35
>3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum}
Probab=26.97 E-value=3.9e+02 Score=26.83 Aligned_cols=132 Identities=15% Similarity=0.107 Sum_probs=0.0
Q ss_pred HHHHHHHHcCCEEEEEecCCCCC--------HHHHHHHHhcCCeEEeech-hhhhhhhc-------cCCCcEEEEEecCC
Q 008862 389 SLVKMAEDIGFQVQVVRPDRTSE--------LAKIYRALNSSDVMVGVHG-AAMTHFLF-------MKPGSVFIQVIPLG 452 (550)
Q Consensus 389 evv~~l~~~Gf~V~v~e~~~~~s--------~~eQi~l~~~aDVlVGvHG-AGLTN~lF-------mppga~VIEI~P~g 452 (550)
++++.++..|++|...+...... ..+--+++..||+++-.-- ..-|.-++ |+||+++|-+---+
T Consensus 151 ~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~l~ell~~aDvV~l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~ 230 (324)
T 3evt_A 151 SLAAKASALGMHVIGVNTTGHPADHFHETVAFTATADALATANFIVNALPLTPTTHHLFSTELFQQTKQQPMLINIGRGP 230 (324)
T ss_dssp HHHHHHHHTTCEEEEEESSCCCCTTCSEEEEGGGCHHHHHHCSEEEECCCCCGGGTTCBSHHHHHTCCSCCEEEECSCGG
T ss_pred HHHHHHHhCCCEEEEECCCcchhHhHhhccccCCHHHHHhhCCEEEEcCCCchHHHHhcCHHHHhcCCCCCEEEEcCCCh
Q ss_pred CCcccccchHHHHhhcCCceEEEEecCCCCcccccCCCCCCccCCCCcc---cccCcceeeeeecCCccEEEehHHHHHH
Q 008862 453 TDWAAETYYGEPARKLGLKYIGYTILPRESSLYDQYDKNDPVLRDPSSV---NEKGWQYTKTIYLDGQNVRLNLRRFQKR 529 (550)
Q Consensus 453 ~~~~~~~~Y~~~A~~~Gl~Y~~y~i~~eEssL~~~y~~dh~v~~dP~~i---~~kgW~~~~~~yL~~QnV~lDi~rF~~~ 529 (550)
.....--...-+.-++......+..+|.- +.+||.+.-|..+ |-.|+.. +...++
T Consensus 231 --~vd~~aL~~aL~~g~i~gA~lDV~~~EPl-----~~~~pL~~~~nvilTPHia~~t~---------------~~~~~~ 288 (324)
T 3evt_A 231 --AVDTTALMTALDHHQLSMAALDVTEPEPL-----PTDHPLWQRDDVLITPHISGQIA---------------HFRATV 288 (324)
T ss_dssp --GBCHHHHHHHHHTTSCSEEEESSCSSSSC-----CTTCGGGGCSSEEECCSCTTCCC---------------CHHHHH
T ss_pred --hhhHHHHHHHHHhCCceEEEeCCCCCCCC-----CCCChhhcCCCEEEcCccccChH---------------HHHHHH
Q ss_pred HHHHHHHHHhhcc
Q 008862 530 LVRAYDYSINRIS 542 (550)
Q Consensus 530 L~~A~~~l~~~~~ 542 (550)
...+.+.+.+.++
T Consensus 289 ~~~~~~nl~~~l~ 301 (324)
T 3evt_A 289 FPIFAANFAQFVK 301 (324)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
No 36
>2gt1_A Lipopolysaccharide heptosyltransferase-1; GT-B fold; 1.90A {Escherichia coli UTI89} PDB: 2h1f_A* 2h1h_A*
Probab=26.30 E-value=1.8e+02 Score=28.06 Aligned_cols=81 Identities=17% Similarity=0.232 Sum_probs=48.9
Q ss_pred CCCEEEEE--EcCCCcccc--CHHHHHHHHHHcCCEEEEE-e-c------------------CCCCCHHHHHHHHhcCCe
Q 008862 369 KKPKLVIL--SRNGSRAIT--NENSLVKMAEDIGFQVQVV-R-P------------------DRTSELAKIYRALNSSDV 424 (550)
Q Consensus 369 ~rprlviI--sR~~sR~Il--Ne~evv~~l~~~Gf~V~v~-e-~------------------~~~~s~~eQi~l~~~aDV 424 (550)
.+|.+++. +|...|++- +-.|+++.+.+.|+.+++. . + ...+++.|-+++++.||+
T Consensus 177 ~~~~i~l~pga~~~~k~wp~~~~~~l~~~L~~~~~~vvl~~g~~~e~~~~~~i~~~~~~~~l~g~~sl~el~ali~~a~l 256 (326)
T 2gt1_A 177 AGEYAVFLHATTRDDKHWPEEHWRELIGLLADSGIRIKLPWGAPHEEERAKRLAEGFAYVEVLPKMSLEGVARVLAGAKF 256 (326)
T ss_dssp TTSEEEEECCCSSGGGSCCHHHHHHHHHHTTTTCCEEEECCSSHHHHHHHHHHHTTCTTEEECCCCCHHHHHHHHHTCSE
T ss_pred CCCEEEEEeCCCCccccCCHHHHHHHHHHHHHCCCcEEEecCCHHHHHHHHHHHhhCCcccccCCCCHHHHHHHHHhCCE
Confidence 45665553 232235555 4456666665557777664 1 1 123579999999999999
Q ss_pred EEeechhhhhhhhccCCCcEEEEEecC
Q 008862 425 MVGVHGAAMTHFLFMKPGSVFIQVIPL 451 (550)
Q Consensus 425 lVGvHGAGLTN~lFmppga~VIEI~P~ 451 (550)
+||+= +|.+|+--+ =|.-+|-|+..
T Consensus 257 ~I~~D-SG~~HlAaa-~g~P~v~lfg~ 281 (326)
T 2gt1_A 257 VVSVD-TGLSHLTAA-LDRPNITVYGP 281 (326)
T ss_dssp EEEES-SHHHHHHHH-TTCCEEEEESS
T ss_pred EEecC-CcHHHHHHH-cCCCEEEEECC
Confidence 99994 233444333 35666667643
No 37
>3u7q_A Nitrogenase molybdenum-iron protein alpha chain; multiple rossmann fold domains, reductase, nitrogen fixing, oxidoreductase; HET: HCA ICS 1CL CLF; 1.00A {Azotobacter vinelandii} SCOP: c.92.2.3 PDB: 1g21_A* 1g20_A* 1fp4_A* 1m1n_A* 1l5h_A* 1m1y_A* 1m34_A* 1n2c_A* 2afh_A* 2afi_A* 2afk_A* 2min_A* 3min_A* 3k1a_A* 1h1l_A* 1qgu_A* 1qh1_A* 1qh8_A*
Probab=26.25 E-value=1.1e+02 Score=32.70 Aligned_cols=98 Identities=10% Similarity=-0.000 Sum_probs=69.5
Q ss_pred CCCCEEEEEEcCCCccccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHhcCCeEEeech-hhhhhhhccC--CCcE
Q 008862 368 SKKPKLVILSRNGSRAITNENSLVKMAEDIGFQVQVVRPDRTSELAKIYRALNSSDVMVGVHG-AAMTHFLFMK--PGSV 444 (550)
Q Consensus 368 ~~rprlviIsR~~sR~IlNe~evv~~l~~~Gf~V~v~e~~~~~s~~eQi~l~~~aDVlVGvHG-AGLTN~lFmp--pga~ 444 (550)
..+++|-||.=- ..--|..|+.+.|++.|.+|+.+-+ ...+++| ++-+.+|++-|.++. +|..-+-+|. =|.-
T Consensus 218 ~~~~~VNIiG~~--~~~gD~~eik~lL~~~Gi~v~~~~~-g~~t~~e-i~~~~~A~~niv~~~~~~~~~A~~Le~~~GiP 293 (492)
T 3u7q_A 218 STPYDVAIIGDY--NIGGDAWSSRILLEEMGLRCVAQWS-GDGSISE-IELTPKVKLNLVHCYRSMNYISRHMEEKYGIP 293 (492)
T ss_dssp CCTTEEEEEEEC--CBTTTTHHHHHHHHHTTCEEEEEEE-TTCCHHH-HHHGGGCSEEEESCHHHHHHHHHHHHHHHCCC
T ss_pred CCCCcEEEECCC--CChhhHHHHHHHHHHCCCeEEEEeC-CCCCHHH-HHhhhcCcEEEEEChHHHHHHHHHHHHHhCCc
Confidence 345677777532 2234678999999999999987644 4567755 677889999887753 5655555664 3777
Q ss_pred EEEEecCCCCcccccchHHHHhhcCC
Q 008862 445 FIQVIPLGTDWAAETYYGEPARKLGL 470 (550)
Q Consensus 445 VIEI~P~g~~~~~~~~Y~~~A~~~Gl 470 (550)
.+++-|+|++- ...+++.+|+..|.
T Consensus 294 ~i~~~p~G~~~-T~~~L~~ia~~~g~ 318 (492)
T 3u7q_A 294 WMEYNFFGPTK-TIESLRAIAAKFDE 318 (492)
T ss_dssp EEECCCSSHHH-HHHHHHHHHTTSCH
T ss_pred eEecCccCHHH-HHHHHHHHHHHhCC
Confidence 88888888542 35688999998884
No 38
>3tov_A Glycosyl transferase family 9; structural genomics, PSI-BIOL protein structure initiative, midwest center for structural genomics, MCSG; 2.98A {Veillonella parvula}
Probab=25.89 E-value=3.4e+02 Score=26.99 Aligned_cols=81 Identities=7% Similarity=0.072 Sum_probs=51.6
Q ss_pred CCCEEEEEE--cCCCcccc--CHHHHHHHHHHcCCEEEEEec---------------------CCCCCHHHHHHHHhcCC
Q 008862 369 KKPKLVILS--RNGSRAIT--NENSLVKMAEDIGFQVQVVRP---------------------DRTSELAKIYRALNSSD 423 (550)
Q Consensus 369 ~rprlviIs--R~~sR~Il--Ne~evv~~l~~~Gf~V~v~e~---------------------~~~~s~~eQi~l~~~aD 423 (550)
.+|.+++.- |...|++- +-.++++.+.+.|++|+++-. ...+++.|-+++++.||
T Consensus 184 ~~~~i~i~pga~~~~k~wp~~~~~~l~~~l~~~g~~vvl~g~~~e~~~~~~i~~~~~~~~~~l~g~~sl~e~~ali~~a~ 263 (349)
T 3tov_A 184 TDILIGFNIGSAVPEKRWPAERFAHVADYFGRLGYKTVFFGGPMDLEMVQPVVEQMETKPIVATGKFQLGPLAAAMNRCN 263 (349)
T ss_dssp TCCEEEEECCCSSGGGCCCHHHHHHHHHHHHHHTCEEEECCCTTTHHHHHHHHHTCSSCCEECTTCCCHHHHHHHHHTCS
T ss_pred CCCEEEEeCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEeCcchHHHHHHHHHhcccccEEeeCCCCHHHHHHHHHhCC
Confidence 456665543 33346654 556778777766888776421 12478999999999999
Q ss_pred eEEeechhhhhhhhccCCCcEEEEEecC
Q 008862 424 VMVGVHGAAMTHFLFMKPGSVFIQVIPL 451 (550)
Q Consensus 424 VlVGvHGAGLTN~lFmppga~VIEI~P~ 451 (550)
++||+= +|..|+.-+ -|.-+|-|+..
T Consensus 264 ~~i~~D-sG~~HlAaa-~g~P~v~lfg~ 289 (349)
T 3tov_A 264 LLITND-SGPMHVGIS-QGVPIVALYGP 289 (349)
T ss_dssp EEEEES-SHHHHHHHT-TTCCEEEECSS
T ss_pred EEEECC-CCHHHHHHh-cCCCEEEEECC
Confidence 999973 344444322 35666767643
No 39
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=25.55 E-value=1.5e+02 Score=26.65 Aligned_cols=54 Identities=13% Similarity=0.140 Sum_probs=38.9
Q ss_pred CCCCEEEEEEcCCCccccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHhcCC
Q 008862 368 SKKPKLVILSRNGSRAITNENSLVKMAEDIGFQVQVVRPDRTSELAKIYRALNSSD 423 (550)
Q Consensus 368 ~~rprlviIsR~~sR~IlNe~evv~~l~~~Gf~V~v~e~~~~~s~~eQi~l~~~aD 423 (550)
.++|++++..=.+.-.=+...-+..+++..||+|+.+. ...+.++.++.+...+
T Consensus 16 ~~~~~vlla~~~gd~HdiG~~~va~~l~~~G~eVi~lG--~~~p~e~lv~aa~~~~ 69 (161)
T 2yxb_A 16 RRRYKVLVAKMGLDGHDRGAKVVARALRDAGFEVVYTG--LRQTPEQVAMAAVQED 69 (161)
T ss_dssp CCSCEEEEEEESSSSCCHHHHHHHHHHHHTTCEEECCC--SBCCHHHHHHHHHHTT
T ss_pred CCCCEEEEEeCCCCccHHHHHHHHHHHHHCCCEEEECC--CCCCHHHHHHHHHhcC
Confidence 46788887765555454555567788899999998764 3578888888886443
No 40
>1psw_A ADP-heptose LPS heptosyltransferase II; structural genomics, NYSGXRC, LPS biosynthetic pathway, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.87.1.7
Probab=25.07 E-value=3e+02 Score=26.60 Aligned_cols=82 Identities=12% Similarity=0.154 Sum_probs=51.0
Q ss_pred CCCEEEEEE--cC-CCcccc--CHHHHHHHHHHcCCEEEEEe-------------------------cCCCCCHHHHHHH
Q 008862 369 KKPKLVILS--RN-GSRAIT--NENSLVKMAEDIGFQVQVVR-------------------------PDRTSELAKIYRA 418 (550)
Q Consensus 369 ~rprlviIs--R~-~sR~Il--Ne~evv~~l~~~Gf~V~v~e-------------------------~~~~~s~~eQi~l 418 (550)
.+|.+++.- |. ..|++- +-.++++.|.+.|+.++++. ....+++.|-+++
T Consensus 179 ~~~~i~l~pga~~~~~k~wp~~~~~~l~~~L~~~~~~vvl~g~~~e~~~~~~i~~~~~~~~~~~~~~l~g~~sl~e~~al 258 (348)
T 1psw_A 179 ERPMIGFCPGAEFGPAKRWPHYHYAELAKQLIDEGYQVVLFGSAKDHEAGNEILAALNTEQQAWCRNLAGETQLDQAVIL 258 (348)
T ss_dssp SSCEEEEECCCTTCGGGSCCHHHHHHHHHHHHHTTCEEEECCCGGGHHHHHHHHTTSCHHHHTTEEECTTTSCHHHHHHH
T ss_pred CCcEEEEECCCCccccCCCCHHHHHHHHHHHHHCCCeEEEEeChhhHHHHHHHHHhhhhccccceEeccCcCCHHHHHHH
Confidence 345555432 22 225555 55667776666677766531 1124689999999
Q ss_pred HhcCCeEEeechhhhhhhhccCCCcEEEEEecCC
Q 008862 419 LNSSDVMVGVHGAAMTHFLFMKPGSVFIQVIPLG 452 (550)
Q Consensus 419 ~~~aDVlVGvHGAGLTN~lFmppga~VIEI~P~g 452 (550)
++.||++||+= +|..|+.-+ =|.-+|-|+...
T Consensus 259 i~~a~l~I~~D-sg~~HlAaa-~g~P~v~lfg~t 290 (348)
T 1psw_A 259 IAACKAIVTND-SGLMHVAAA-LNRPLVALYGPS 290 (348)
T ss_dssp HHTSSEEEEES-SHHHHHHHH-TTCCEEEEESSS
T ss_pred HHhCCEEEecC-CHHHHHHHH-cCCCEEEEECCC
Confidence 99999999984 444555433 366677777543
No 41
>2pjk_A 178AA long hypothetical molybdenum cofactor biosynthesis protein B; 3D-structure, structural genomics, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii} PDB: 3iwt_A*
Probab=23.67 E-value=1.3e+02 Score=27.66 Aligned_cols=69 Identities=13% Similarity=0.249 Sum_probs=45.8
Q ss_pred CCCCCEEEEEEcCC----------CccccCHHHHHHHHHHcCCEEEEEe--cCCCCCHHHHHHH-Hhc--CCeEEeechh
Q 008862 367 QSKKPKLVILSRNG----------SRAITNENSLVKMAEDIGFQVQVVR--PDRTSELAKIYRA-LNS--SDVMVGVHGA 431 (550)
Q Consensus 367 ~~~rprlviIsR~~----------sR~IlNe~evv~~l~~~Gf~V~v~e--~~~~~s~~eQi~l-~~~--aDVlVGvHGA 431 (550)
..++||+-+|+=.. ...=.|-.-+.+.+++.|++++... +++.-.+.+.++- +.+ +|++|.-=|.
T Consensus 12 ~~~~~rv~IittGde~~~~~~~~G~i~Dsn~~~L~~~l~~~G~~v~~~~iv~Dd~~~I~~al~~a~~~~~~DlVittGG~ 91 (178)
T 2pjk_A 12 APKSLNFYVITISTSRYEKLLKKEPIVDESGDIIKQLLIENGHKIIGYSLVPDDKIKILKAFTDALSIDEVDVIISTGGT 91 (178)
T ss_dssp -CCCCEEEEEEECHHHHHHHHTTCCCCCHHHHHHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHTCTTCCEEEEESCC
T ss_pred CCCCCEEEEEEeCcccccccccCCeEeehHHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhcCCCCEEEECCCC
Confidence 35678888887553 3334455568899999999887533 3333346666544 344 8999998888
Q ss_pred hhhh
Q 008862 432 AMTH 435 (550)
Q Consensus 432 GLTN 435 (550)
|.+.
T Consensus 92 s~g~ 95 (178)
T 2pjk_A 92 GYSP 95 (178)
T ss_dssp SSST
T ss_pred CCCC
Confidence 8764
No 42
>2zuv_A Lacto-N-biose phosphorylase; beta-alpha-barrel, TIM barrel, glycosyltransferase, transferase; HET: NDG; 1.85A {Bifidobacterium longum} PDB: 2zus_A* 2zuu_A* 2zut_A* 2zuw_A*
Probab=23.50 E-value=19 Score=40.62 Aligned_cols=115 Identities=16% Similarity=0.211 Sum_probs=73.3
Q ss_pred CCEEEEEEcCCC-cccc--------------CHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHhcCCeEEeechhhhh
Q 008862 370 KPKLVILSRNGS-RAIT--------------NENSLVKMAEDIGFQVQVVRPDRTSELAKIYRALNSSDVMVGVHGAAMT 434 (550)
Q Consensus 370 rprlviIsR~~s-R~Il--------------Ne~evv~~l~~~Gf~V~v~e~~~~~s~~eQi~l~~~aDVlVGvHGAGLT 434 (550)
..+|-|+.=-|+ |.+. ...=++++|...+++|..+..+ .+.+. ......|||| =+|.+
T Consensus 438 ~~kVAVLnsWGklRSW~~~~vaHak~~kq~ysy~GilEALsg~~~dV~FIsfd---DI~e~-e~L~d~DVII---n~G~A 510 (759)
T 2zuv_A 438 ELNVAILNSWGKMRSWMAFTVAHALPNKQTYSYYGILESLSGMRVNVRFISFD---DVLAH-GIDSDIDVII---NGGPV 510 (759)
T ss_dssp CSEEEEEESSGGGGTTTTTCSSTTCCCTTTHHHHHHHHHHHTSSSEEEEEEHH---HHHHH-CCCTTCCEEE---EEECT
T ss_pred CceEEEEecCCCCcccccccccccccccccccHHHHHHHHhcCCCceEEecHH---Hhccc-cccccCCEEE---ecCcc
Confidence 367888876664 5444 2233899999999999987631 22222 4578999999 56666
Q ss_pred hhhccCC------------------CcEEEEEecC-CC-CcccccchHHHHhhcCCceEEEEecCCCCcccccCC----C
Q 008862 435 HFLFMKP------------------GSVFIQVIPL-GT-DWAAETYYGEPARKLGLKYIGYTILPRESSLYDQYD----K 490 (550)
Q Consensus 435 N~lFmpp------------------ga~VIEI~P~-g~-~~~~~~~Y~~~A~~~Gl~Y~~y~i~~eEssL~~~y~----~ 490 (550)
|.+|+.+ |+.+|=+--+ .+ ++ ...-|..+|..+|++...+.- .. ...|+ .
T Consensus 511 ~TalSgg~~W~~p~~~~aLR~fV~~GGgLIgVGepSsfqg~-g~gryFqLADVLGVd~e~g~d-lp----~gkY~~~~~~ 584 (759)
T 2zuv_A 511 DTAFTGGDVWTNPKLVETVRAWVRGGGAFVGVGEPSSAPRF-QTGRFFQLADVIGVDEERYQT-LS----VDKYFPPVVP 584 (759)
T ss_dssp TSTTTCGGGGGCHHHHHHHHHHHHTTCEEEEEESTTEEEEE-ETTEEETTHHHHSEEECCSSC-TT----BCCBCCCCCC
T ss_pred hhcccCccccCCHHHHHHHHHHHHcCCcEEEeCCccccccc-cCcccccHHhhcCcccccCCc-CC----CCccccccCC
Confidence 6677665 7888877533 22 12 223444599999988754421 11 34443 4
Q ss_pred CCCccCC
Q 008862 491 NDPVLRD 497 (550)
Q Consensus 491 dh~v~~d 497 (550)
+|+|+.|
T Consensus 585 ~HfIl~d 591 (759)
T 2zuv_A 585 DHFITAD 591 (759)
T ss_dssp SCTTTTT
T ss_pred CCceecc
Confidence 7999886
No 43
>2dko_A Caspase-3; low barrier hydrogen bond, caspase, drug design, radiation D tetrahedral intermediate, protease; 1.06A {Homo sapiens} PDB: 1nme_A 2h5i_A 2h5j_A 2h65_A 2xyg_A* 2xyh_A 2xyp_A* 2xzd_A 2xzt_A 2y0b_A 3edq_A 1gfw_A 1re1_A* 1pau_A* 1rhk_A* 1rhm_A* 1rhq_A* 1rhr_A* 1rhu_A* 1rhj_A* ...
Probab=23.27 E-value=74 Score=28.59 Aligned_cols=42 Identities=14% Similarity=0.283 Sum_probs=26.5
Q ss_pred HHHHHHHHHHcCCEEEEEecCCCCCHHH---HHHHHhcCC--------eEEeechh
Q 008862 387 ENSLVKMAEDIGFQVQVVRPDRTSELAK---IYRALNSSD--------VMVGVHGA 431 (550)
Q Consensus 387 e~evv~~l~~~Gf~V~v~e~~~~~s~~e---Qi~l~~~aD--------VlVGvHGA 431 (550)
.+.|.+.++++||+|.+.+ +++..| .++-++.-| ++|--||-
T Consensus 43 ~~~L~~~f~~LgF~V~~~~---dlt~~em~~~l~~~~~~dh~~~dc~vv~ilSHG~ 95 (146)
T 2dko_A 43 AANLRETFRNLKYEVRNKN---DLTREEIVELMRDVSKEDHSKRSSFVCVLLSHGE 95 (146)
T ss_dssp HHHHHHHHHHTTCEEEEEE---SCCHHHHHHHHHHHHHSCCTTEEEEEEEEESCEE
T ss_pred HHHHHHHHHHCCCEEEEee---CCCHHHHHHHHHHHHHhhcCCCCeEEEEeccCCC
Confidence 3467788899999999876 355444 444444433 45555664
No 44
>3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida}
Probab=23.10 E-value=2.2e+02 Score=27.89 Aligned_cols=48 Identities=19% Similarity=0.113 Sum_probs=35.8
Q ss_pred hcCCeEEeechhhhhhh------hccCCCcEEEEEecCCCCcccccchHHHHhhcCCc
Q 008862 420 NSSDVMVGVHGAAMTHF------LFMKPGSVFIQVIPLGTDWAAETYYGEPARKLGLK 471 (550)
Q Consensus 420 ~~aDVlVGvHGAGLTN~------lFmppga~VIEI~P~g~~~~~~~~Y~~~A~~~Gl~ 471 (550)
..+|++|..-.+|+..- -+++++++|+.++-.. ..+.+-..|+..|++
T Consensus 180 ~~~DivInaTp~gm~~~~~~i~~~~l~~~~~V~DlvY~P----~~T~ll~~A~~~G~~ 233 (272)
T 3pwz_A 180 QSFDIVVNATSASLTADLPPLPADVLGEAALAYELAYGK----GLTPFLRLAREQGQA 233 (272)
T ss_dssp CCCSEEEECSSGGGGTCCCCCCGGGGTTCSEEEESSCSC----CSCHHHHHHHHHSCC
T ss_pred cCCCEEEECCCCCCCCCCCCCCHHHhCcCCEEEEeecCC----CCCHHHHHHHHCCCC
Confidence 67999999888887532 2467899999985321 245688889999987
No 45
>3pzy_A MOG; ssgcid, seattle structural genomics center for infectious DI biosynthetic protein; 1.80A {Mycobacterium avium subsp} PDB: 3oi9_A 2g4r_A
Probab=22.87 E-value=56 Score=29.76 Aligned_cols=67 Identities=12% Similarity=0.149 Sum_probs=44.5
Q ss_pred CCCCEEEEEEcCC-----CccccCHHHHHHHHHHcCCEEEEEe--cCCCCCHHHHHHHH-h-cCCeEEeechhhhhh
Q 008862 368 SKKPKLVILSRNG-----SRAITNENSLVKMAEDIGFQVQVVR--PDRTSELAKIYRAL-N-SSDVMVGVHGAAMTH 435 (550)
Q Consensus 368 ~~rprlviIsR~~-----sR~IlNe~evv~~l~~~Gf~V~v~e--~~~~~s~~eQi~l~-~-~aDVlVGvHGAGLTN 435 (550)
.++||+.+|+=.. ...=.|-.-+.+.+++.|++++... +++ -.+.+.++.. . .+|++|.-=|.|.+-
T Consensus 5 ~~~~rv~ii~tGdEl~~G~i~Dsn~~~l~~~l~~~G~~v~~~~iv~Dd-~~i~~al~~a~~~~~DlVittGG~s~g~ 80 (164)
T 3pzy_A 5 MTTRSARVIIASTRASSGEYEDRCGPIITEWLAQQGFSSAQPEVVADG-SPVGEALRKAIDDDVDVILTSGGTGIAP 80 (164)
T ss_dssp --CCEEEEEEECHHHHC----CCHHHHHHHHHHHTTCEECCCEEECSS-HHHHHHHHHHHHTTCSEEEEESCCSSST
T ss_pred CCCCEEEEEEECCCCCCCceeeHHHHHHHHHHHHCCCEEEEEEEeCCH-HHHHHHHHHHHhCCCCEEEECCCCCCCC
Confidence 3578888886543 2444566778899999999875322 344 5566666544 3 799999998888764
No 46
>2j32_A Caspase-3; Pro-caspase3, thiol protease, hydrolase, hydrolase-hydrolase inhibitor complex; 1.30A {Homo sapiens} PDB: 2j30_A 3h0e_A* 2j33_A 3pd1_A 2j31_A 3pcx_A 1nms_A* 1nmq_A* 3deh_A* 3dei_A* 3dej_A* 3dek_A* 3pd0_A 3itn_A 1qx3_A
Probab=22.45 E-value=76 Score=30.82 Aligned_cols=55 Identities=16% Similarity=0.336 Sum_probs=32.5
Q ss_pred CHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHhcCC--------eEEeechhhhhhhhccCCC
Q 008862 386 NENSLVKMAEDIGFQVQVVRPDRTSELAKIYRALNSSD--------VMVGVHGAAMTHFLFMKPG 442 (550)
Q Consensus 386 Ne~evv~~l~~~Gf~V~v~e~~~~~s~~eQi~l~~~aD--------VlVGvHGAGLTN~lFmppg 442 (550)
..+.|.+.++++||+|++.+-.....+.+.++-+..-| +++.-||- -+.++...+
T Consensus 42 D~~~l~~~f~~LgF~V~~~~dlt~~em~~~l~~~~~~~~~~~d~~v~~~lsHG~--~g~i~~~D~ 104 (250)
T 2j32_A 42 DAANLRETFRNLKYEVRNKNDLTREEIVELMRDVSKEDHSKRSSFVCVLLSHGE--EGIIFGTNG 104 (250)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCCHHHHHHHHHHHHTSCCTTEEEEEEEEESCEE--TTEEEETTE
T ss_pred HHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHhhccCCCEEEEEECCCCC--CCeEEecCC
Confidence 34568899999999999876322233444455554443 34555875 345554443
No 47
>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}
Probab=21.80 E-value=1.9e+02 Score=29.22 Aligned_cols=94 Identities=18% Similarity=0.211 Sum_probs=58.0
Q ss_pred CccccCHHHHHHHHHHcCCEEEEEecCC----CCCHHHHHH----------HHhcCCeEEeechhhhhhhhccCCCcEEE
Q 008862 381 SRAITNENSLVKMAEDIGFQVQVVRPDR----TSELAKIYR----------ALNSSDVMVGVHGAAMTHFLFMKPGSVFI 446 (550)
Q Consensus 381 sR~IlNe~evv~~l~~~Gf~V~v~e~~~----~~s~~eQi~----------l~~~aDVlVGvHGAGLTN~lFmppga~VI 446 (550)
.||+-=..+-++.|.+.|++|.+ |... ..+=+|-.+ ++ +||++|++-----...-.+++|..+|
T Consensus 13 e~Rv~l~P~~v~~L~~~g~~v~v-e~~ag~~~~~~d~~y~~aga~i~~~~~~~-~ad~il~vk~p~~~~~~~l~~~~~~~ 90 (369)
T 2eez_A 13 ENRVALTPGGVESLVRRGHTVLV-ERGAGEGSGLSDAEYARAGAELVGREEAW-GAEMVVKVKEPLPEEYGFLREGLILF 90 (369)
T ss_dssp CCCCSSCHHHHHHHHHTTCEEEE-ETTTTGGGTCCHHHHHHHTCEEECHHHHT-TSSEEECSSCCCGGGGGGCCTTCEEE
T ss_pred CceeCcCHHHHHHHHhCCCEEEE-eCCCCccCCCCHHHHHHCCCEEeccccee-cCCEEEEECCCCHHHHhhcCCCcEEE
Confidence 46665556777888889999965 3221 223222222 55 89999988754334456678998887
Q ss_pred EEecCCCCcccccchHHHHhhcCCceEEEEecCC
Q 008862 447 QVIPLGTDWAAETYYGEPARKLGLKYIGYTILPR 480 (550)
Q Consensus 447 EI~P~g~~~~~~~~Y~~~A~~~Gl~Y~~y~i~~e 480 (550)
=..-.+ .....-......|+..+.|...+.
T Consensus 91 ~~~~~~----~~~~~~~~l~~~gi~~ia~e~~~~ 120 (369)
T 2eez_A 91 TYLHLA----ADRGLTEAMLRSGVTGIAYETVQL 120 (369)
T ss_dssp ECCCGG----GCHHHHHHHHHHTCEEEEGGGCCC
T ss_pred EEeccc----CCHHHHHHHHHCCCeEEEeecccc
Confidence 665443 222334445678899887765443
No 48
>1qtn_A Caspase-8; apoptosis, dithiane-DIOL, caspase, cysteine-protease, hydrol hydrolase inhibitor complex; 1.20A {Homo sapiens} SCOP: c.17.1.1 PDB: 3kjn_A* 3kjq_A* 2y1l_A 2c2z_A 1qdu_A* 1f9e_A*
Probab=21.39 E-value=1e+02 Score=28.27 Aligned_cols=54 Identities=15% Similarity=0.284 Sum_probs=31.1
Q ss_pred HHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHhcCC--------eEEeechhhhhhhhccCCC
Q 008862 387 ENSLVKMAEDIGFQVQVVRPDRTSELAKIYRALNSSD--------VMVGVHGAAMTHFLFMKPG 442 (550)
Q Consensus 387 e~evv~~l~~~Gf~V~v~e~~~~~s~~eQi~l~~~aD--------VlVGvHGAGLTN~lFmppg 442 (550)
.+.|.+.++++||+|.+.+-.....+.+.++-++.-| |+|--||-- +.++...|
T Consensus 57 ~~~L~~~f~~LgF~V~~~~dlt~~em~~~l~~~~~~dh~~~dc~vv~ilSHG~~--g~i~g~D~ 118 (164)
T 1qtn_A 57 AGALTTTFEELHFEIKPHDDCTVEQIYEILKIYQLMDHSNMDCFICCILSHGDK--GIIYGTDG 118 (164)
T ss_dssp HHHHHHHHHHTTCEEEEEESCCHHHHHHHHHHHHHSCCTTCSCEEEEEESCEET--TEEECTTS
T ss_pred HHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHHHHhhccCCCEEEEEeCCCCCC--CEEEeeCC
Confidence 3457788899999998875222223444444444444 455557752 55555444
No 49
>2ql9_A Caspase-7; cysteine protease, apoptosis, thiol protease, zymogen, hydro hydrolase inhibitor complex; HET: CIT; 2.14A {Homo sapiens} PDB: 2ql7_A* 2ql5_A* 2qlb_A* 2qlf_A 2qlj_A* 3edr_A 3ibc_A 3ibf_A 1i51_A
Probab=21.14 E-value=70 Score=29.78 Aligned_cols=54 Identities=20% Similarity=0.405 Sum_probs=32.3
Q ss_pred HHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHhcCC--------eEEeechhhhhhhhccCCC
Q 008862 387 ENSLVKMAEDIGFQVQVVRPDRTSELAKIYRALNSSD--------VMVGVHGAAMTHFLFMKPG 442 (550)
Q Consensus 387 e~evv~~l~~~Gf~V~v~e~~~~~s~~eQi~l~~~aD--------VlVGvHGAGLTN~lFmppg 442 (550)
.+.|.+.++++||+|.+.+-.....+.+.++-+++-| |+|--||-- +.|+...|
T Consensus 71 ~~~L~~~F~~LgF~V~v~~dlt~~em~~~l~~~s~~dh~~~dc~vvvilSHG~~--g~I~g~D~ 132 (173)
T 2ql9_A 71 AEALFKCFRSLGFDVIVYNDCSCAKMQDLLKKASEEDHTNAACFACILLSHGEE--NVIYGKDG 132 (173)
T ss_dssp HHHHHHHHHHHTEEEEEEESCCHHHHHHHHHHHHTSCCTTEEEEEEEEESCEET--TEEEETTE
T ss_pred HHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHhhccCCCeEEEeecCCCCC--CEEEEcCC
Confidence 4567788899999998876322223444444454555 566667753 45554444
No 50
>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A*
Probab=21.03 E-value=78 Score=33.75 Aligned_cols=58 Identities=16% Similarity=0.198 Sum_probs=38.6
Q ss_pred HHHHHHHHcCCEEEEEecCC------------CCCHHHHHHHHhcCCeEEeech-hhhhh---hhccCCCcEEEEEe
Q 008862 389 SLVKMAEDIGFQVQVVRPDR------------TSELAKIYRALNSSDVMVGVHG-AAMTH---FLFMKPGSVFIQVI 449 (550)
Q Consensus 389 evv~~l~~~Gf~V~v~e~~~------------~~s~~eQi~l~~~aDVlVGvHG-AGLTN---~lFmppga~VIEI~ 449 (550)
.+++.|+..|.+|++.+.+. ..++. +++..|||+|..-| .++.| +--|++|++||-+-
T Consensus 234 ~vA~~Lra~Ga~Viv~D~dp~ra~~A~~~G~~v~~Le---eal~~ADIVi~atgt~~lI~~e~l~~MK~gailINvg 307 (435)
T 3gvp_A 234 GCCAALKAMGSIVYVTEIDPICALQACMDGFRLVKLN---EVIRQVDIVITCTGNKNVVTREHLDRMKNSCIVCNMG 307 (435)
T ss_dssp HHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECCHH---HHTTTCSEEEECSSCSCSBCHHHHHHSCTTEEEEECS
T ss_pred HHHHHHHHCCCEEEEEeCChhhhHHHHHcCCEeccHH---HHHhcCCEEEECCCCcccCCHHHHHhcCCCcEEEEec
Confidence 36677778888888776321 12343 36779999999755 23333 34489999999884
No 51
>3rfq_A Pterin-4-alpha-carbinolamine dehydratase MOAB2; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: B3P; 2.25A {Mycobacterium marinum} PDB: 3tcr_A
Probab=20.96 E-value=68 Score=30.04 Aligned_cols=71 Identities=13% Similarity=0.184 Sum_probs=48.0
Q ss_pred CCCCCCEEEEEEcCCC----ccccCHHHHHHHHHHcCCEEEEEe--cCCCCCHHHHHHHH--hcCCeEEeechhhhhhh
Q 008862 366 DQSKKPKLVILSRNGS----RAITNENSLVKMAEDIGFQVQVVR--PDRTSELAKIYRAL--NSSDVMVGVHGAAMTHF 436 (550)
Q Consensus 366 ~~~~rprlviIsR~~s----R~IlNe~evv~~l~~~Gf~V~v~e--~~~~~s~~eQi~l~--~~aDVlVGvHGAGLTN~ 436 (550)
...++||+.||+=... +.=.|-.-+.+.+++.|++++... +++.-.+.+.++.. ..+|++|.-=|.|.+.-
T Consensus 26 ~~~~~~rvaIistGdEl~~G~~Dsn~~~L~~~L~~~G~~v~~~~iv~Dd~~~I~~al~~a~~~~~DlVIttGGts~g~~ 104 (185)
T 3rfq_A 26 AELVVGRALVVVVDDRTAHGDEDHSGPLVTELLTEAGFVVDGVVAVEADEVDIRNALNTAVIGGVDLVVSVGGTGVTPR 104 (185)
T ss_dssp ---CCEEEEEEEECHHHHTTCCCSHHHHHHHHHHHTTEEEEEEEEECSCHHHHHHHHHHHHHTTCSEEEEESCCSSSTT
T ss_pred cCCCCCEEEEEEECcccCCCCcCcHHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCc
Confidence 3457899998875431 244577788899999999886533 33333466666544 57999999999987653
No 52
>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}
Probab=20.63 E-value=1.3e+02 Score=31.67 Aligned_cols=35 Identities=23% Similarity=0.450 Sum_probs=24.4
Q ss_pred HHHHHhcCCeEEeechh-h------hhhhhc--cCCCcEEEEEe
Q 008862 415 IYRALNSSDVMVGVHGA-A------MTHFLF--MKPGSVFIQVI 449 (550)
Q Consensus 415 Qi~l~~~aDVlVGvHGA-G------LTN~lF--mppga~VIEI~ 449 (550)
..+.+..|||+|+..+. | +|.-++ |+||++||-+-
T Consensus 269 l~e~l~~aDVVI~tvlipg~~ap~Lvt~emv~~Mk~GsVIVDvA 312 (405)
T 4dio_A 269 VAEHIAKQDIVITTALIPGRPAPRLVTREMLDSMKPGSVVVDLA 312 (405)
T ss_dssp HHHHHHTCSEEEECCCCSSSCCCCCBCHHHHTTSCTTCEEEETT
T ss_pred HHHHhcCCCEEEECCcCCCCCCCEEecHHHHhcCCCCCEEEEEe
Confidence 35567899999987531 1 233232 89999999995
No 53
>3kbq_A Protein TA0487; structural genomics, CINA, protein structure initiative, MCS midwest center for structural genomics, unknown function; 2.00A {Thermoplasma acidophilum}
Probab=20.47 E-value=86 Score=29.05 Aligned_cols=66 Identities=23% Similarity=0.263 Sum_probs=44.6
Q ss_pred CCEEEEEEcC-----CCccccCHHHHHHHHHHcCCEEEEEe--cCCCCCHHHHHHH-HhcCCeEEeechhhhhh
Q 008862 370 KPKLVILSRN-----GSRAITNENSLVKMAEDIGFQVQVVR--PDRTSELAKIYRA-LNSSDVMVGVHGAAMTH 435 (550)
Q Consensus 370 rprlviIsR~-----~sR~IlNe~evv~~l~~~Gf~V~v~e--~~~~~s~~eQi~l-~~~aDVlVGvHGAGLTN 435 (550)
++|+-||+=. |.+.=.|-.-+.+.|++.|+++.... ++..-.+.+.++. ..++|++|.-=|.|.|.
T Consensus 3 ~~~v~IistGdEll~G~i~DtN~~~l~~~L~~~G~~v~~~~iv~Dd~~~I~~~l~~a~~~~DlVittGG~g~~~ 76 (172)
T 3kbq_A 3 AKNASVITVGNEILKGRTVNTNAAFIGNFLTYHGYQVRRGFVVMDDLDEIGWAFRVALEVSDLVVSSGGLGPTF 76 (172)
T ss_dssp -CEEEEEEECHHHHTTSSCCHHHHHHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHHHCSEEEEESCCSSST
T ss_pred CCEEEEEEEcccccCCcEEeHHHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhcCCEEEEcCCCcCCc
Confidence 3666666533 33555677778899999999886533 3333456666543 46799999999999875
No 54
>1m72_A Caspase-1; caspase, cysteine protease, hydrolase-hydrolase inhibitor CO; 2.30A {Spodoptera frugiperda} SCOP: c.17.1.1 PDB: 3sip_B
Probab=20.23 E-value=89 Score=30.84 Aligned_cols=54 Identities=28% Similarity=0.435 Sum_probs=33.5
Q ss_pred HHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHhcCC--------eEEeechhhhhhhhccCCC
Q 008862 387 ENSLVKMAEDIGFQVQVVRPDRTSELAKIYRALNSSD--------VMVGVHGAAMTHFLFMKPG 442 (550)
Q Consensus 387 e~evv~~l~~~Gf~V~v~e~~~~~s~~eQi~l~~~aD--------VlVGvHGAGLTN~lFmppg 442 (550)
.+.|.+.++++||+|.+.+-.....+.+.++-+.+-| +++.-||- -|.|+...+
T Consensus 58 a~~L~~~f~~LGF~V~~~~dlt~~em~~~l~~~~~~dh~~~d~~v~~~lsHG~--~~~i~~~D~ 119 (272)
T 1m72_A 58 SDNLSKVLKTLGFKVTVFPNLKSEEINKFIQQTAEMDHSDADCLLVAVLTHGE--LGMLYAKDT 119 (272)
T ss_dssp HHHHHHHHHHTTCEEEEEESCCHHHHHHHHHHHHTSCCTTEEEEEEEEESCEE--TTEEECSSS
T ss_pred HHHHHHHHHHCCCEEEEecCcCHHHHHHHHHHHHHhhcCCCCEEEEEEcCCCC--CCEEEecCC
Confidence 3467788999999999876322234444555554444 34555874 566665555
No 55
>3aek_B Light-independent protochlorophyllide reductase S; iron/sulfur cluster, oxidoreductase, bacteriochlorophyll biosynthesis; HET: PMR; 2.30A {Rhodobacter capsulatus} PDB: 3aeq_B* 3aer_B 3aes_B* 3aeu_B 3aet_B
Probab=20.16 E-value=55 Score=35.39 Aligned_cols=101 Identities=16% Similarity=0.239 Sum_probs=70.8
Q ss_pred CCCEEEEEEcCC--CccccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHhcCCeEEeech-hhhhhhhccCC--Cc
Q 008862 369 KKPKLVILSRNG--SRAITNENSLVKMAEDIGFQVQVVRPDRTSELAKIYRALNSSDVMVGVHG-AAMTHFLFMKP--GS 443 (550)
Q Consensus 369 ~rprlviIsR~~--sR~IlNe~evv~~l~~~Gf~V~v~e~~~~~s~~eQi~l~~~aDVlVGvHG-AGLTN~lFmpp--ga 443 (550)
.+++|-||.=.. ...--|..|+.+.|++.|.+|+.+-+ ...+++ +++-+.+|++-|.++- +|..-+-+|.. |.
T Consensus 152 ~~~~VNIlG~~~~g~~~~gD~~eikrlL~~~Gi~v~~~~p-gg~t~~-ei~~~~~A~~niv~~~~~g~~~A~~Le~r~Gi 229 (525)
T 3aek_B 152 PEVTCNLLGATALGFRHRDDVAEVTKLLATMGIKVNVCAP-LGASPD-DLRKLGQAHFNVLMYPETGESAARHLERACKQ 229 (525)
T ss_dssp SSCEEEEEEECTTCTTHHHHHHHHHHHHHTTTCEEEEEEE-TTCCHH-HHHTGGGSSEEEECCHHHHHHHHHHHHHHSCC
T ss_pred CCCceEEEecCCCCCCChhhHHHHHHHHHHCCCeEEEEeC-CCCCHH-HHHhhccCCEEEEEChhhHHHHHHHHHHHcCC
Confidence 456787875432 12234567899999999999988654 356764 4677888888888773 45555555543 56
Q ss_pred EEEEEecCCCCcccccchHHHHhhcCCce
Q 008862 444 VFIQVIPLGTDWAAETYYGEPARKLGLKY 472 (550)
Q Consensus 444 ~VIEI~P~g~~~~~~~~Y~~~A~~~Gl~Y 472 (550)
-.++..|+|++- ...|.+.+|+..|...
T Consensus 230 P~i~~~PiG~~~-T~~~Lr~ia~~~g~~~ 257 (525)
T 3aek_B 230 PFTKIVPIGVGA-TRDFLAEVSKITGLPV 257 (525)
T ss_dssp CBCCCCCCSHHH-HHHHHHHHHHHHCCCC
T ss_pred CceecCCcCHHH-HHHHHHHHHHHHCCCH
Confidence 666678999643 4578999999999875
No 56
>2fi0_A Conserved domain protein; structural genomics,streptococcus pneumoniae, PSI, protein S initiative; 2.10A {Streptococcus pneumoniae} SCOP: a.248.1.1
Probab=20.03 E-value=66 Score=25.88 Aligned_cols=21 Identities=29% Similarity=0.321 Sum_probs=18.5
Q ss_pred ccccCHHHHHHHHHHcCCEEE
Q 008862 382 RAITNENSLVKMAEDIGFQVQ 402 (550)
Q Consensus 382 R~IlNe~evv~~l~~~Gf~V~ 402 (550)
++=+|.+++++.|++.||+|+
T Consensus 58 ~~gid~d~l~~~L~~~g~~~~ 78 (81)
T 2fi0_A 58 LAGTPMDKIVRTLEANGYEVI 78 (81)
T ss_dssp HHTCCHHHHHHHHHHTTCEEE
T ss_pred HcCCCHHHHHHHHHHcCCEee
Confidence 455789999999999999986
Done!