BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008863
(550 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4F11|A Chain A, Crystal Structure Of The Extracellular Domain Of Human
Gaba(B) Receptor Gbr2
pdb|4F12|A Chain A, Crystal Structure Of The Extracellular Domain Of Human
Gaba(B) Receptor Gbr2
Length = 433
Score = 65.9 bits (159), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 88/403 (21%), Positives = 163/403 (40%), Gaps = 74/403 (18%)
Query: 43 ANSQMGKQAITAMKIAVQNFNSDS--RNHKLSLQIRDHNRDPFQAATAAQELI--NKEKV 98
A +G+ + A+++A++ ++S R + L L++ D D + A + I +
Sbjct: 28 AKGSIGRGVLPAVELAIEQIRNESLLRPYFLDLRLYDTECDNAKGLKAFYDAIKYGPNHL 87
Query: 99 KVIAGMETWEETAVVAEIASRVQVPILSFAAPAVTP-LSMSRRWPYLIRMASNDSEQMKC 157
V G+ T+++AE + LSFAA TP L+ +++PY R +D+
Sbjct: 88 MVFGGVCP-SVTSIIAESLQGWNLVQLSFAA--TTPVLADKKKYPYFFRTVPSDNAVNPA 144
Query: 158 IADLARKYNWRRVAAIYEDNVYGGDSGKLALLAEALQNVSSSEIQSRLVLPPISSIS-DP 216
I L + Y W+RV + +D + +E +++ + + S S DP
Sbjct: 145 ILKLLKHYQWKRVGTLTQD---------VQRFSEVRNDLTGVLYGEDIEISDTESFSNDP 195
Query: 217 KEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGLVGKDSVWIV---------- 266
+V KK++ R+ I+ Q +M +F A + G WI+
Sbjct: 196 CTSV----KKLKGNDVRI-ILGQFDQNMAAKVFCCAYEENMYGSKYQWIIPGWYEPSWWE 250
Query: 267 -TNTVANALDSLNTTVISSMEGTLGIKXXXXXXXXPYKEFSALFRRNFTSEY-PEEDHFH 324
+T AN+ L ++++MEG +G+ K S + + EY +
Sbjct: 251 QVHTEANSSRCLRKNLLAAMEGYIGVDFEPLSSKQ-IKTISGKTPQQYEREYNNKRSGVG 309
Query: 325 PSIHALRAHDSIKIITEAIGR----------------LNYNISS-PEMLLRQMLSSDFSG 367
PS A+D I +I + + R NY + ++L M ++F G
Sbjct: 310 PSKFHGYAYDGIWVIAKTLQRAMETLHASSRHQRIQDFNYTDHTLGRIILNAMNETNFFG 369
Query: 368 LSGKIRFKDGELLN---------------------ADTLRIVN 389
++G++ F++GE + ADTL I+N
Sbjct: 370 VTGQVVFRNGERMGTIKFTQFQDSREVKVGEYNAVADTLEIIN 412
>pdb|4EY3|A Chain A, Crystal Structure Of Solute Binding Protein Of Abc
Transporter In Complex With P-Hydroxybenzoic Acid
pdb|4EYG|A Chain A, Crystal Structure Of Solute Binding Protein Of Abc
Transporter From Rhodopseudomonas Palustris Bisb5 In
Complex With Vanillic Acid
pdb|4EYG|B Chain B, Crystal Structure Of Solute Binding Protein Of Abc
Transporter From Rhodopseudomonas Palustris Bisb5 In
Complex With Vanillic Acid
pdb|4EYK|A Chain A, Crystal Structure Of Solute Binding Protein Of Abc
Transporter From Rhodopseudomonas Palustris Bisb5 In
Complex With 3,4-Dihydroxy Benzoic Acid
Length = 368
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 50/182 (27%), Positives = 80/182 (43%), Gaps = 9/182 (4%)
Query: 30 NIEEVTKIGAIV---DANSQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAA 86
N E+ K+G IV + GKQ A+K+ ++ K+ + ++D P
Sbjct: 2 NAEDTFKVGLIVPXTGGQASTGKQIDNAIKLYIKKHGDTVAGKKIEVILKDDAAIPDNTK 61
Query: 87 TAAQELINKEKVKVIAGMETWEETAVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIR 146
AQELI +KV VIAG A +A++ +VP + AA ++ R PY++R
Sbjct: 62 RLAQELIVNDKVNVIAGFGITPAALAAAPLATQAKVPEIVXAAGTSI---ITERSPYIVR 118
Query: 147 MASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLAEALQNVSSSEIQSRLV 206
+ ++ I D A K ++VA + D G D+ LA E EI +
Sbjct: 119 TSFTLAQSSIIIGDWAAKNGIKKVATLTSDYAPGNDA--LAFFKERF-TAGGGEIVEEIK 175
Query: 207 LP 208
+P
Sbjct: 176 VP 177
>pdb|3LMK|A Chain A, Ligand Binding Domain Of Metabotropoc Glutamate Receptor
Mglur5 Complexed With Glutamate
pdb|3LMK|B Chain B, Ligand Binding Domain Of Metabotropoc Glutamate Receptor
Mglur5 Complexed With Glutamate
Length = 492
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 61/254 (24%), Positives = 115/254 (45%), Gaps = 40/254 (15%)
Query: 36 KIGAIVDANSQMGKQAITAMKIAVQNFNSDSR---NHKLSLQIRD---HN---------- 79
K GA+ Q G Q + AM ++ NSD N L +IRD H+
Sbjct: 43 KCGAV---REQYGIQRVEAMLHTLERINSDPTLLPNITLGCEIRDSCWHSAVALEQSIEF 99
Query: 80 -RDPFQAATAAQELINK--------EKVKVIAGMETWEETAVVAEIASRVQ---VPILSF 127
RD ++ + L+ K I G+ ++V ++ + +Q +P +++
Sbjct: 100 IRDSLISSEEEEGLVRCVDGSSSSFRSKKPIVGVIGPGSSSVAIQVQNLLQLFNIPQIAY 159
Query: 128 AAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLA 187
+A ++ LS + Y +R+ +D++Q + + D+ ++YNW V+A++ + Y G+SG
Sbjct: 160 SATSMD-LSDKTLFKYFMRVVPSDAQQARAMVDIVKRYNWTYVSAVHTEGNY-GESG--- 214
Query: 188 LLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIH 247
EA +++S+ E S I S + +++ LKK+ + +V MT+
Sbjct: 215 --MEAFKDMSAKEGISIAHSYKIYS-NAGEQSFDKLLKKLTSHLPKARVVACFCEGMTVR 271
Query: 248 -LFTEANRMGLVGK 260
L R+GL G+
Sbjct: 272 GLLMAMRRLGLAGE 285
>pdb|4EVS|A Chain A, Crystal Structure Of Abc Transporter From R. Palustris -
Solute Binding Protein (Rpa0985) In Complex With
4-Hydroxybenzoate
Length = 371
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 55/117 (47%), Gaps = 4/117 (3%)
Query: 68 NHKLSLQIRDH-NRDPFQAATAAQELINKEKVKVIAGMETWEETAVVAEIASRVQVPILS 126
H + RD + +P Q+ AQELI KEKV+ IAG+ VA + +VP +
Sbjct: 42 GHTVEFVYRDEVSPNPAQSKALAQELIVKEKVQYIAGLYFTPNAXAVAPLLQEAKVPXVV 101
Query: 127 FAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDS 183
A S++ + PY++R + + A +A++ ++VA D G D+
Sbjct: 102 LNAATS---SITEKSPYIVRTSFTXFQNTVPAAKVAKQKGAKKVAIAVSDYGPGIDA 155
>pdb|3KS9|A Chain A, Metabotropic Glutamate Receptor Mglur1 Complexed With
Ly341495 Antagonist
pdb|3KS9|B Chain B, Metabotropic Glutamate Receptor Mglur1 Complexed With
Ly341495 Antagonist
Length = 496
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 63/125 (50%), Gaps = 5/125 (4%)
Query: 73 LQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEETAVVAEIASRVQ---VPILSFAA 129
+ IRD + Q L K IAG+ ++V ++ + +Q +P ++++A
Sbjct: 101 ISIRDEKDGINRCLPDGQSLPPGRTKKPIAGVIGPGSSSVAIQVQNLLQLFDIPQIAYSA 160
Query: 130 PAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALL 189
++ LS + Y +R+ +D+ Q + + D+ ++YNW V+A++ + Y G+SG A
Sbjct: 161 TSID-LSDKTLYKYFLRVVPSDTLQARAMLDIVKRYNWTYVSAVHTEGNY-GESGMDAFK 218
Query: 190 AEALQ 194
A Q
Sbjct: 219 ELAAQ 223
>pdb|2E4Z|A Chain A, Crystal Structure Of The Ligand-Binding Region Of The
Group Iii Metabotropic Glutamate Receptor
Length = 501
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 45/164 (27%), Positives = 69/164 (42%), Gaps = 26/164 (15%)
Query: 42 DANSQMGKQAITAMKIAVQNFNSDSR---NHKLSLQIRD-HNRDPF---QAATAAQELIN 94
D + G + AM A+ NSD N L +I D +RD + Q+ T Q LI
Sbjct: 37 DIKRENGIHRLEAMLYALDQINSDPNLLPNVTLGARILDTCSRDTYALEQSLTFVQALIQ 96
Query: 95 K------------------EKVKVIAGMETWEETAVVAEIASRVQVPILSFAAPAVTPLS 136
K EKV + G + +VA I Q+P +S+A+ A LS
Sbjct: 97 KDTSDVRCTNGEPPVFVKPEKVVGVIGASGSSVSIMVANILRLFQIPQISYASTA-PELS 155
Query: 137 MSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYG 180
RR+ + R+ DS Q + + D+ + W V+ + + YG
Sbjct: 156 DDRRYDFFSRVVPPDSFQAQAMVDIVKALGWNYVSTLASEGSYG 199
>pdb|3MQ4|A Chain A, Metabotropic Glutamate Receptor Mglur7 Complexed With
Ly3414 Antagonist
Length = 481
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 45/164 (27%), Positives = 69/164 (42%), Gaps = 26/164 (15%)
Query: 42 DANSQMGKQAITAMKIAVQNFNSDSR---NHKLSLQIRD-HNRDPF---QAATAAQELIN 94
D + G + AM A+ NSD N L +I D +RD + Q+ T Q LI
Sbjct: 37 DIKRENGIHRLEAMLYALDQINSDPNLLPNVTLGARILDTCSRDTYALEQSLTFVQALIQ 96
Query: 95 K------------------EKVKVIAGMETWEETAVVAEIASRVQVPILSFAAPAVTPLS 136
K EKV + G + +VA I Q+P +S+A+ A LS
Sbjct: 97 KDTSDVRCTNGEPPVFVKPEKVVGVIGASGSSVSIMVANILRLFQIPQISYASTA-PELS 155
Query: 137 MSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYG 180
RR+ + R+ DS Q + + D+ + W V+ + + YG
Sbjct: 156 DDRRYDFFSRVVPPDSFQAQAMVDIVKALGWNYVSTLASEGSYG 199
>pdb|1EWK|A Chain A, Crystal Structure Of Metabotropic Glutamate Receptor
Subtype 1 Complexed With Glutamate
pdb|1EWK|B Chain B, Crystal Structure Of Metabotropic Glutamate Receptor
Subtype 1 Complexed With Glutamate
pdb|1EWT|A Chain A, Crystal Structure Of Metabotropic Glutamate Receptor
Subtype 1 Ligand Free Form I
pdb|1EWT|B Chain B, Crystal Structure Of Metabotropic Glutamate Receptor
Subtype 1 Ligand Free Form I
pdb|1EWV|A Chain A, Crystal Structure Of Metabotropic Glutamate Receptor
Subtype 1 Ligand Free Form Ii
pdb|1EWV|B Chain B, Crystal Structure Of Metabotropic Glutamate Receptor
Subtype 1 Ligand Free Form Ii
pdb|1ISR|A Chain A, Crystal Structure Of Metabotropic Glutamate Receptor
Subtype 1 Complexed With Glutamate And Gadolinium Ion
pdb|1ISS|A Chain A, Crystal Structure Of Metabotropic Glutamate Receptor
Subtype 1 Complexed With An Antagonist
pdb|1ISS|B Chain B, Crystal Structure Of Metabotropic Glutamate Receptor
Subtype 1 Complexed With An Antagonist
Length = 490
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 63/125 (50%), Gaps = 5/125 (4%)
Query: 73 LQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEETAVVAEIASRVQ---VPILSFAA 129
+ IRD + Q L K IAG+ ++V ++ + +Q +P ++++A
Sbjct: 96 ISIRDEKDGLNRCLPDGQTLPPGRTKKPIAGVIGPGSSSVAIQVQNLLQLFDIPQIAYSA 155
Query: 130 PAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALL 189
++ LS + Y +R+ +D+ Q + + D+ ++YNW V+A++ + Y G+SG A
Sbjct: 156 TSID-LSDKTLYKYFLRVVPSDTLQARAMLDIVKRYNWTYVSAVHTEGNY-GESGMDAFK 213
Query: 190 AEALQ 194
A Q
Sbjct: 214 ELAAQ 218
>pdb|2LIV|A Chain A, Periplasmic Binding Protein Structure And Function.
Refined X-Ray Structures Of The
LeucineISOLEUCINEVALINE-Binding Protein And Its Complex
With Leucine
Length = 344
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/151 (25%), Positives = 71/151 (47%), Gaps = 6/151 (3%)
Query: 33 EVTKIGAIVDANSQMGKQAITAMKIAVQNFNSDS--RNHKLSLQIRDHNRDPFQAATAAQ 90
+V +GA+ +Q G Q T + AV + N+ + +KL + D DP QA A
Sbjct: 4 KVAVVGAMSGPVAQYGDQEFTGAEQAVADINAKGGIKGNKLQIAKYDDACDPKQAVAVAN 63
Query: 91 ELINKEKVKVIAGMETWEETAVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASN 150
+++N + +K + G T ++I + +++ AA A P +R + ++R
Sbjct: 64 KVVN-DGIKYVIGHLCSSSTQPASDIYEDEGILMITPAATA--PELTARGYQLILRTTGL 120
Query: 151 DSEQMKCIAD-LARKYNWRRVAAIYEDNVYG 180
DS+Q A + K +R+A +++ YG
Sbjct: 121 DSDQGPTAAKYILEKVKPQRIAIVHDKQQYG 151
>pdb|2E4U|A Chain A, Crystal Structure Of The Extracellular Region Of The Group
Ii Metabotropic Glutamate Receptor Complexed With
L-glutamate
pdb|2E4U|B Chain B, Crystal Structure Of The Extracellular Region Of The Group
Ii Metabotropic Glutamate Receptor Complexed With
L-glutamate
pdb|2E4V|A Chain A, Crystal Structure Of The Extracellular Region Of The Group
Ii Metabotropic Glutamate Receptor Complexed With Dcg-Iv
pdb|2E4V|B Chain B, Crystal Structure Of The Extracellular Region Of The Group
Ii Metabotropic Glutamate Receptor Complexed With Dcg-Iv
pdb|2E4W|A Chain A, Crystal Structure Of The Extracellular Region Of The Group
Ii Metabotropic Glutamate Receptor Complexed With
1s,3s-Acpd
pdb|2E4W|B Chain B, Crystal Structure Of The Extracellular Region Of The Group
Ii Metabotropic Glutamate Receptor Complexed With
1s,3s-Acpd
pdb|2E4X|A Chain A, Crystal Structure Of The Extracellular Region Of The Group
Ii Metabotropic Glutamate Receptor Complexed With
1s,3r-Acpd
pdb|2E4X|B Chain B, Crystal Structure Of The Extracellular Region Of The Group
Ii Metabotropic Glutamate Receptor Complexed With
1s,3r-Acpd
pdb|2E4Y|A Chain A, Crystal Structure Of The Extracellular Region Of The Group
Ii Metabotropic Glutamate Receptor Complexed With
2r,4r-Apdc
pdb|2E4Y|B Chain B, Crystal Structure Of The Extracellular Region Of The Group
Ii Metabotropic Glutamate Receptor Complexed With
2r,4r-Apdc
Length = 555
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 66/256 (25%), Positives = 112/256 (43%), Gaps = 46/256 (17%)
Query: 44 NSQMGKQAITAMKIAVQNFNSDSR---NHKLSLQIRD-HNRDPFQAATAAQELINKEKVK 99
N G Q + AM A+ N D+ KL + I D +RD + A + E + K
Sbjct: 37 NEDRGIQRLEAMLFAIDEINKDNYLLPGVKLGVHILDTCSRDTY-ALEQSLEFVRASLTK 95
Query: 100 V---------------------IAGMETWEETAVVAEIASRV---QVPILSFAAPAVTPL 135
V IAG+ ++V ++A+ + Q+P +S+A+ + L
Sbjct: 96 VDEAEYMCPDGSYAIQENIPLLIAGVIGGSYSSVSIQVANLLRLFQIPQISYASTSAK-L 154
Query: 136 SMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLAEA-LQ 194
S R+ Y R D Q K +A++ R +NW V+ + + Y G++G A EA L+
Sbjct: 155 SDKSRYDYFARTVPPDFYQAKAMAEILRFFNWTYVSTVASEGDY-GETGIEAFEQEARLR 213
Query: 195 N--VSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEA 252
N ++++E R S+I ++V EL +Q +RV ++ S D + L A
Sbjct: 214 NICIATAEKVGR------SNIRKSYDSVIREL--LQKPNARVVVLFMRS-DDSRELIAAA 264
Query: 253 NRMGLVGKDSVWIVTN 268
NR V W+ ++
Sbjct: 265 NR---VNASFTWVASD 277
>pdb|1Z15|A Chain A, Crystal Structure Analysis Of Periplasmic
Leu/ile/val-binding Protein In Superopen Form
pdb|1Z16|A Chain A, Crystal Structure Analysis Of Periplasmic
Leu/ile/val-binding Protein With Bound Leucine
pdb|1Z17|A Chain A, Crystal Structure Analysis Of Periplasmic
LeuILEVAL-Binding Protein With Bound Ligand Isoleucine
pdb|1Z18|A Chain A, Crystal Structure Analysis Of Periplasmic
LeuILEVAL-Binding Protein With Bound Valine
Length = 344
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/151 (25%), Positives = 71/151 (47%), Gaps = 6/151 (3%)
Query: 33 EVTKIGAIVDANSQMGKQAITAMKIAVQNFNSDS--RNHKLSLQIRDHNRDPFQAATAAQ 90
+V +GA+ +Q G Q T + AV + N+ + +KL + D DP QA A
Sbjct: 4 KVAVVGAMSGPVAQYGDQEFTGAEQAVADINAKGGIKGNKLQIVKYDDACDPKQAVAVAN 63
Query: 91 ELINKEKVKVIAGMETWEETAVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASN 150
+++N + +K + G T ++I + +++ AA A P +R + ++R
Sbjct: 64 KVVN-DGIKYVIGHLCSSSTQPASDIYEDEGILMITPAATA--PELTARGYQLILRTTGL 120
Query: 151 DSEQMKCIAD-LARKYNWRRVAAIYEDNVYG 180
DS+Q A + K +R+A +++ YG
Sbjct: 121 DSDQGPTAAKYILEKVKPQRIAIVHDKQQYG 151
>pdb|4F06|A Chain A, Crystal Structure Of Solute Binding Protein Of Abc
Transporter From Rhodopseudomonas Palustris Haa2
Rpb_2270 In Complex With P- Hydroxybenzoic Acid
Length = 371
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/159 (25%), Positives = 70/159 (44%), Gaps = 6/159 (3%)
Query: 27 TNVNIEEVTKIGAIVDANSQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDH-NRDPFQA 85
+N + +V IG + GK + V + H + RD + +P Q+
Sbjct: 1 SNADTIKVGVIGTXSGPYALFGKNYKXGIDAWVAEHGNKVAGHTVEFVYRDEVSPNPAQS 60
Query: 86 ATAAQELINKEKVKVIAGMETWEETAVVAEIASRVQVP-ILSFAAPAVTPLSMSRRWPYL 144
AQELI KEKV+ +AG+ VA + +VP ++ AA + S++ + PY+
Sbjct: 61 KALAQELIVKEKVQYLAGLYFTPNAXAVAPLLQEAKVPXVVXNAATS----SITEKSPYI 116
Query: 145 IRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDS 183
+R + + A +A++ +VA D G D+
Sbjct: 117 VRTSFTXFQNTVPAAKVAKQKGATKVAIAVSDYGPGIDA 155
>pdb|3SM9|A Chain A, Crystal Structure Of Metabotropic Glutamate Receptor 3
Precursor In Presence Of Ly341495 Antagonist
Length = 479
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 92/403 (22%), Positives = 153/403 (37%), Gaps = 81/403 (20%)
Query: 44 NSQMGKQAITAMKIAVQNFNSDSR---NHKLSLQIRD-HNRDPFQAATAAQELINKEKVK 99
N G Q + AM A+ N D KL + I D +RD + A + E + K
Sbjct: 36 NEDRGIQRLEAMLFAIDEINKDDYLLPGVKLGVHILDTCSRDTY-ALEQSLEFVRASLTK 94
Query: 100 V---------------------IAGMETWEETAVVAEIASRV---QVPILSFAAPAVTPL 135
V IAG+ ++V ++A+ + Q+P +S+A+ + L
Sbjct: 95 VDEAEYMCPDGSYAIQENIPLLIAGVIGGSYSSVSIQVANLLRLFQIPQISYASTSA-KL 153
Query: 136 SMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLAEA-LQ 194
S R+ Y R D Q K +A++ R +NW V+ + + Y G++G A EA L+
Sbjct: 154 SDKSRYDYFARTVPPDFYQAKAMAEILRFFNWTYVSTVASEGDY-GETGIEAFEQEARLR 212
Query: 195 NVS--SSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEA 252
N+S ++E R S+I ++V EL +Q +RV ++ S D + L A
Sbjct: 213 NISIATAEKVGR------SNIRKSYDSVIREL--LQKPNARVVVLFMRS-DDSRELIAAA 263
Query: 253 NRMGLVGKDSVWIVTNTVANALDSLNTTVISSMEGTLGIKXXXXXXXXPYKEFSALFRRN 312
+R W+ ++ ++I E P ++F R
Sbjct: 264 SR---ANASFTWVASDGWG-----AQESIIKGSEHVAYGAITLELASQPVRQFD----RY 311
Query: 313 FTSEYPEEDH------------FHPSIHALRAHDSIKIITEAIGRLNYNISSPEML---- 356
F S P +H F S+ R H + AI NY S M
Sbjct: 312 FQSLNPYNNHRNPWFRDFWEQKFQCSLQNKRNHRRVCDKHLAIDSSNYEQESKIMFVVNA 371
Query: 357 ----------LRQMLSSDFSGLSGKIRFKDGELLNADTLRIVN 389
+++ L + + L ++ DG+ L D L +N
Sbjct: 372 VYAMAHALHKMQRTLCPNTTKLCDAMKILDGKKLYKDYLLKIN 414
>pdb|4DQD|A Chain A, The Crystal Structure Of A Transporter In Complex With
3-Phenylpyruvic Acid
Length = 363
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 55/115 (47%), Gaps = 4/115 (3%)
Query: 68 NHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEETAVVAEIASRVQVPILSF 127
K++ D DP +AA A++L+++EKV V+ G + + +IA+ + P+ +
Sbjct: 37 GEKVTYFALDDESDPTKAAQNARKLLSEEKVDVLIGSSLTPVSLPLIDIAAEAKTPLXTX 96
Query: 128 AAPA--VTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYG 180
AA A V P R+W Y ++ ND + I K ++V I + YG
Sbjct: 97 AAAAILVAPXDERRKWVY--KVVPNDDIXAEAIGKYIAKTGAKKVGYIGFSDAYG 149
>pdb|3TX6|A Chain A, The Structure Of A Putative Abc-Transporter Periplasmic
Component From Rhodopseudomonas Palustris
pdb|4F8J|A Chain A, The Structure Of An Aromatic Compound Transport Protein
From Rhodopseudomonas Palustris In Complex With
P-Coumarate
pdb|4FB4|A Chain A, The Structure Of An Abc-Transporter Family Protein From
Rhodopseudomonas Palustris In Complex With Caffeic Acid
Length = 362
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 32/67 (47%)
Query: 68 NHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEETAVVAEIASRVQVPILSF 127
H L + + D DP A T A+ + + K VI G T V+ +A+ QVP ++
Sbjct: 40 GHPLKVIVLDDGGDPTAATTNARRFVTESKADVIXGSSVTPPTVAVSNVANEAQVPHIAL 99
Query: 128 AAPAVTP 134
A +TP
Sbjct: 100 APLPITP 106
>pdb|3SG0|A Chain A, The Crystal Structure Of An Extracellular Ligand-Binding
Receptor From Rhodopseudomonas Palustris Haa2
Length = 386
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 55/115 (47%), Gaps = 4/115 (3%)
Query: 68 NHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEETAVVAEIASRVQVPILSF 127
K++ D DP +AA A++L+++EKV V+ G + + +IA+ + P+ +
Sbjct: 60 GEKVTYFALDDESDPTKAAQNARKLLSEEKVDVLIGSSLTPVSLPLIDIAAEAKTPLXTX 119
Query: 128 AAPA--VTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYG 180
AA A V P R+W Y ++ ND + I K ++V I + YG
Sbjct: 120 AAAAILVAPXDERRKWVY--KVVPNDDIXAEAIGKYIAKTGAKKVGYIGFSDAYG 172
>pdb|3JPW|A Chain A, Crystal Structure Of Amino Terminal Domain Of The Nmda
Receptor Subunit Nr2b
pdb|3JPY|A Chain A, Crystal Structure Of The Zinc-Bound Amino Terminal Domain
Of The Nmda Receptor Subunit Nr2b
Length = 363
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 44/234 (18%), Positives = 102/234 (43%), Gaps = 17/234 (7%)
Query: 53 TAMKIAVQNFNSDSRNHKLSLQIR-----DHNRDPFQAATAAQELINKEKVKVIAGMETW 107
T+ ++A+++ + H LS+ R + DP T +L++ K++ + +
Sbjct: 13 TSDEVAIKDAHEKDDFHHLSVVPRVELVAMNETDPKSIITRICDLMSDRKIQGVVFADDT 72
Query: 108 EETAV---VAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARK 164
++ A+ + I+++ PIL + ++ + + +Q + ++ +
Sbjct: 73 DQEAIAQILDFISAQTLTPILGIHGGSSMIMADKDESSMFFQFGPSIEQQASVMLNIMEE 132
Query: 165 YNWRRVAAIYEDNVYGGDSGKLALLAEALQN-VSSSEIQSRLVLPPISSISDPKEAVRGE 223
Y+W + + + G + + ++N E++ L+L S+ D ++ +
Sbjct: 133 YDWYIFSIV--TTYFPGYQDFVNKIRSTIENSFVGWELEEVLLLD--MSLDDGDSKIQNQ 188
Query: 224 LKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGLVGKDSVWIVTNTVANALDSL 277
LKK+Q I+L + + ++F AN +GL G WIV + VA D++
Sbjct: 189 LKKLQSP----IILLYCTKEEATYIFEVANSVGLTGYGYTWIVPSLVAGDTDTV 238
>pdb|3QEL|B Chain B, Crystal Structure Of Amino Terminal Domains Of The Nmda
Receptor Subunit Glun1 And Glun2b In Complex With
Ifenprodil
pdb|3QEL|D Chain D, Crystal Structure Of Amino Terminal Domains Of The Nmda
Receptor Subunit Glun1 And Glun2b In Complex With
Ifenprodil
pdb|3QEM|B Chain B, Crystal Structure Of Amino Terminal Domains Of The Nmda
Receptor Subunit Glun1 And Glun2b In Complex With Ro
25-6981
pdb|3QEM|D Chain D, Crystal Structure Of Amino Terminal Domains Of The Nmda
Receptor Subunit Glun1 And Glun2b In Complex With Ro
25-6981
Length = 364
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 44/234 (18%), Positives = 102/234 (43%), Gaps = 17/234 (7%)
Query: 53 TAMKIAVQNFNSDSRNHKLSLQIR-----DHNRDPFQAATAAQELINKEKVKVIAGMETW 107
T+ ++A+++ + H LS+ R + DP T +L++ K++ + +
Sbjct: 14 TSDEVAIKDAHEKDDFHHLSVVPRVELVAMNETDPKSIITRICDLMSDRKIQGVVFADDT 73
Query: 108 EETAV---VAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARK 164
++ A+ + I+++ PIL + ++ + + +Q + ++ +
Sbjct: 74 DQEAIAQILDFISAQTLTPILGIHGGSSMIMADKDESSMFFQFGPSIEQQASVMLNIMEE 133
Query: 165 YNWRRVAAIYEDNVYGGDSGKLALLAEALQN-VSSSEIQSRLVLPPISSISDPKEAVRGE 223
Y+W + + + G + + ++N E++ L+L S+ D ++ +
Sbjct: 134 YDWYIFSIV--TTYFPGYQDFVNKIRSTIENSFVGWELEEVLLLD--MSLDDGDSKIQNQ 189
Query: 224 LKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGLVGKDSVWIVTNTVANALDSL 277
LKK+Q I+L + + ++F AN +GL G WIV + VA D++
Sbjct: 190 LKKLQSP----IILLYCTKEEATYIFEVANSVGLTGYGYTWIVPSLVAGDTDTV 239
>pdb|3UKJ|A Chain A, Crystal Structure Of Extracellular Ligand-Binding Receptor
From Rhodopseudomonas Palustris Haa2
pdb|4EYO|A Chain A, Crystal Structure Of Solute Binding Protein Of Abc
Transporter From Rhodopseudomonas Palustris Haa2 In
Complex With P-Coumaric Acid
pdb|4EYQ|A Chain A, Crystal Structure Of Solute Binding Protein Of Abc
Transporter From Rhodopseudomonas Palustris Haa2 In
Complex With Caffeic Acid3-(4- Hydroxy-Phenyl)pyruvic
Acid
Length = 362
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 31/67 (46%)
Query: 68 NHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEETAVVAEIASRVQVPILSF 127
H + + D DP A T A+ + + K VI G T V+ +A+ QVP ++
Sbjct: 40 GHPIKXIVLDDGGDPTAATTNARRFVTESKADVIXGSSVTPPTVAVSNVANEAQVPHIAL 99
Query: 128 AAPAVTP 134
A VTP
Sbjct: 100 APLPVTP 106
>pdb|3UK0|A Chain A, Rpd_1889 Protein, An Extracellular Ligand-Binding Receptor
From Rhodopseudomonas Palustris
Length = 362
Score = 37.7 bits (86), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 32/67 (47%)
Query: 68 NHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEETAVVAEIASRVQVPILSF 127
H + + + D DP A T A+ + + K VI G + ++ +A+ Q+P ++
Sbjct: 40 GHPIKIIVLDDGGDPTAATTNARRFVTESKADVIXGSSVTPPSVAISNVANEAQIPHIAL 99
Query: 128 AAPAVTP 134
A +TP
Sbjct: 100 APLPITP 106
>pdb|3EWQ|A Chain A, Hcov-229e Nsp3 Adrp Domain
pdb|3EWR|A Chain A, Complex Of Substrate Adp-Ribose With Hcov-229e Nsp3 Adrp
Domain
Length = 168
Score = 36.6 bits (83), Expect = 0.038, Method: Composition-based stats.
Identities = 16/36 (44%), Positives = 24/36 (66%)
Query: 359 QMLSSDFSGLSGKIRFKDGELLNADTLRIVNVVGKK 394
Q LS + GL+GK++ G ++ D+LRI NVVG +
Sbjct: 59 QRLSKEHIGLAGKVKVGTGVMVECDSLRIFNVVGPR 94
>pdb|3EJG|A Chain A, Crystal Structure Of Hcov-229e X-Domain
Length = 193
Score = 36.2 bits (82), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 24/36 (66%)
Query: 359 QMLSSDFSGLSGKIRFKDGELLNADTLRIVNVVGKK 394
Q LS + GL+GK++ G ++ D+LRI NVVG +
Sbjct: 86 QRLSKEHIGLAGKVKVGTGVMVECDSLRIFNVVGPR 121
>pdb|1YK1|A Chain A, Structure Of Natriuretic Peptide Receptor-C Complexed With
Brain Natriuretic Peptide
pdb|1YK1|B Chain B, Structure Of Natriuretic Peptide Receptor-C Complexed With
Brain Natriuretic Peptide
Length = 479
Score = 35.4 bits (80), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 38/81 (46%)
Query: 97 KVKVIAGMETWEETAVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMK 156
K +I G A VA +AS +P+LS A A + +L R+A ++ +
Sbjct: 126 KPDLILGPVCEYAAAPVARLASHWDLPMLSAGALAAGFQHKDSEYSHLTRVAPAYAKMGE 185
Query: 157 CIADLARKYNWRRVAAIYEDN 177
+ L R ++W R A +Y D+
Sbjct: 186 MMLALFRHHHWSRAALVYSDD 206
>pdb|1YK0|A Chain A, Structure Of Natriuretic Peptide Receptor-c Complexed With
Atrial Natriuretic Peptide
pdb|1YK0|B Chain B, Structure Of Natriuretic Peptide Receptor-c Complexed With
Atrial Natriuretic Peptide
Length = 480
Score = 35.4 bits (80), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 38/81 (46%)
Query: 97 KVKVIAGMETWEETAVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMK 156
K +I G A VA +AS +P+LS A A + +L R+A ++ +
Sbjct: 127 KPDLILGPVCEYAAAPVARLASHWDLPMLSAGALAAGFQHKDSEYSHLTRVAPAYAKMGE 186
Query: 157 CIADLARKYNWRRVAAIYEDN 177
+ L R ++W R A +Y D+
Sbjct: 187 MMLALFRHHHWSRAALVYSDD 207
>pdb|1JDN|A Chain A, Crystal Structure Of Hormone Receptor
pdb|1JDP|A Chain A, Crystal Structure Of Hormone/receptor Complex
pdb|1JDP|B Chain B, Crystal Structure Of Hormone/receptor Complex
Length = 441
Score = 35.4 bits (80), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 34/68 (50%)
Query: 110 TAVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRR 169
A VA +AS +P+LS A A + +L R+A ++ + + L R ++W R
Sbjct: 97 AAPVARLASHWDLPMLSAGALAAGFQHKDSEYSHLTRVAPAYAKMGEMMLALFRHHHWSR 156
Query: 170 VAAIYEDN 177
A +Y D+
Sbjct: 157 AALVYSDD 164
>pdb|3I45|A Chain A, Crystal Structure Of Putative Twin-Arginine Translocation
Pathway Signal Protein From Rhodospirillum Rubrum Atcc
11170
Length = 387
Score = 33.9 bits (76), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
Query: 56 KIAVQNFNSDSR---NHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAG 103
++AV+ N+ L + RD DP +A TAAQEL+ + V +AG
Sbjct: 29 QLAVEQINAAGGLLGGRPLEVISRDDGGDPGKAVTAAQELLTRHGVHALAG 79
>pdb|3OLZ|A Chain A, Crystal Structure Of The Gluk3 (Glur7) Atd Dimer At 2.75
Angstrom Resolution
pdb|3OLZ|B Chain B, Crystal Structure Of The Gluk3 (Glur7) Atd Dimer At 2.75
Angstrom Resolution
Length = 398
Score = 33.9 bits (76), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 57/251 (22%), Positives = 98/251 (39%), Gaps = 24/251 (9%)
Query: 33 EVTKIGAIVD----ANSQMGKQAITAMKIAVQNFNSDSR---NHKLSLQI-RDHNRDPFQ 84
V +IG I + N+Q+ A + + N + N L+ I R H D F+
Sbjct: 3 HVIRIGGIFEYADGPNAQVMNAEEHAFRFSANIINRNRTLLPNTTLTYDIQRIHFHDSFE 62
Query: 85 AATAAQELINKEKVKVIAGMETWEETAVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYL 144
A A + + V I G T V I + ++VP + PL + +
Sbjct: 63 ATKKACDQL-ALGVVAIFGPSQGSCTNAVQSICNALEVPHIQLRWKH-HPLD--NKDTFY 118
Query: 145 IRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLAEALQNVSSSEIQSR 204
+ + + + I DL + WR +Y+ DS L L E + S I+ +
Sbjct: 119 VNLYPDYASLSHAILDLVQSLKWRSATVVYD------DSTGLIRLQELIMAPSRYNIRLK 172
Query: 205 LVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGLVGKDSVW 264
+ PI SD + E+K+ ++ + I+ S M + +A MG++ + +
Sbjct: 173 IRQLPID--SDDSRPLLKEMKRGREFR----IIFDCSHTMAAQILKQAMAMGMMTEYYHF 226
Query: 265 IVTNTVANALD 275
I T ALD
Sbjct: 227 IFTTLDLYALD 237
>pdb|3H6G|A Chain A, Crystal Structure Of The Glur6 Amino Terminal Domain Dimer
Assembly
pdb|3H6G|B Chain B, Crystal Structure Of The Glur6 Amino Terminal Domain Dimer
Assembly
pdb|3H6H|A Chain A, Crystal Structure Of The Glur6 Amino Terminal Domain Dimer
Assembly Mpd Form
pdb|3H6H|B Chain B, Crystal Structure Of The Glur6 Amino Terminal Domain Dimer
Assembly Mpd Form
pdb|3QLV|C Chain C, Crystal Structure Of The Gluk2GLUK5 (GLUR6KA2) ATD
TETRAMER ASSEMBLY
pdb|3QLV|D Chain D, Crystal Structure Of The Gluk2GLUK5 (GLUR6KA2) ATD
TETRAMER ASSEMBLY
pdb|3QLV|F Chain F, Crystal Structure Of The Gluk2GLUK5 (GLUR6KA2) ATD
TETRAMER ASSEMBLY
pdb|3QLV|H Chain H, Crystal Structure Of The Gluk2GLUK5 (GLUR6KA2) ATD
TETRAMER ASSEMBLY
pdb|3QLV|J Chain J, Crystal Structure Of The Gluk2GLUK5 (GLUR6KA2) ATD
TETRAMER ASSEMBLY
Length = 395
Score = 32.7 bits (73), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 62/302 (20%), Positives = 117/302 (38%), Gaps = 60/302 (19%)
Query: 143 YLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLAEALQNVSSSEIQ 202
+ + + + S + I DL + + W+ V +Y+ DS L L E ++ S ++
Sbjct: 114 FYVSLYPDFSSLSRAILDLVQFFKWKTVTVVYD------DSTGLIRLQELIKAPSRYNLR 167
Query: 203 SRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGLVGKDS 262
++ P +D K+A L K + ++ S +M + +A MG++ +
Sbjct: 168 LKIRQLP----ADTKDA--KPLLKEMKRGKEFHVIFDCSHEMAAGILKQALAMGMMTEYY 221
Query: 263 VWIVTNTVANALD------------------SLNTTVISSMEGTLGIKXXXXXXXXPYKE 304
+I T ALD + NT V S +E K P K
Sbjct: 222 HYIFTTLDLFALDVEPYRYSGVNMTGFRILNTENTQVSSIIE-----KWSMERLQAPPKP 276
Query: 305 FSALFRRNFTSEYPEEDHFHPSIHALRAHDSIKIITEAIGR--------LNYNISSPEML 356
S L D F + AL +D++ +++ A+ + L N P
Sbjct: 277 DSGLL-----------DGFMTTDAAL-MYDAVHVVSVAVQQFPQMTVSSLQCNRHKPWRF 324
Query: 357 LRQMLS----SDFSGLSGKIRFKDGELLNAD-TLRIVNVVGKKYKELDFWLPNFGFSKTS 411
+ +S + + GL+G+I F L D L ++++ + +++ W P G + T
Sbjct: 325 GTRFMSLIKEAHWEGLTGRITFNKTNGLRTDFDLDVISLKEEGLEKIGTWDPASGLNMTE 384
Query: 412 SK 413
S+
Sbjct: 385 SQ 386
>pdb|3G3I|A Chain A, Crystal Structure Of The Glur6 Ligand Binding Domain Dimer
I442h K494e I749l Q753k Mutant With Glutamate And Nacl
At 1.37 Angstrom Resolution
pdb|3G3I|B Chain B, Crystal Structure Of The Glur6 Ligand Binding Domain Dimer
I442h K494e I749l Q753k Mutant With Glutamate And Nacl
At 1.37 Angstrom Resolution
Length = 259
Score = 32.0 bits (71), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 10/72 (13%)
Query: 459 VPTRTFFEKFVVIK--DDPLNGNSNDKNLRYDGFSIELFRLVVDHLNYDLPYEFVPHDGV 516
+ T E +V+ K D PL GN R++G+ I+L R + HL + V DG
Sbjct: 7 IVTTILEEPYVLFKKSDKPLYGND-----RFEGYCIDLLRELSTHLGFTYEIRLV-EDGK 60
Query: 517 Y--DDLINGVYD 526
Y D +NG ++
Sbjct: 61 YGAQDDVNGQWN 72
>pdb|3G3K|A Chain A, Crystal Structure Of The Glur6 Ligand Binding Domain Dimer
I442h K494e K665r I749l Q753k E757q Mutant With
Glutamate And Nacl At 1.24 Angstrom Resolution
pdb|3G3K|B Chain B, Crystal Structure Of The Glur6 Ligand Binding Domain Dimer
I442h K494e K665r I749l Q753k E757q Mutant With
Glutamate And Nacl At 1.24 Angstrom Resolution
Length = 259
Score = 32.0 bits (71), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 10/72 (13%)
Query: 459 VPTRTFFEKFVVIK--DDPLNGNSNDKNLRYDGFSIELFRLVVDHLNYDLPYEFVPHDGV 516
+ T E +V+ K D PL GN R++G+ I+L R + HL + V DG
Sbjct: 7 IVTTILEEPYVLFKKSDKPLYGND-----RFEGYCIDLLRELSTHLGFTYEIRLV-EDGK 60
Query: 517 Y--DDLINGVYD 526
Y D +NG ++
Sbjct: 61 YGAQDDVNGQWN 72
>pdb|3G3J|A Chain A, Crystal Structure Of The Glur6 Ligand Binding Domain Dimer
I442h K494e K665r I749l Q753k Mutant With Glutamate And
Nacl At 1.32 Angstrom Resolution
pdb|3G3J|B Chain B, Crystal Structure Of The Glur6 Ligand Binding Domain Dimer
I442h K494e K665r I749l Q753k Mutant With Glutamate And
Nacl At 1.32 Angstrom Resolution
Length = 259
Score = 32.0 bits (71), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 10/72 (13%)
Query: 459 VPTRTFFEKFVVIK--DDPLNGNSNDKNLRYDGFSIELFRLVVDHLNYDLPYEFVPHDGV 516
+ T E +V+ K D PL GN R++G+ I+L R + HL + V DG
Sbjct: 7 IVTTILEEPYVLFKKSDKPLYGND-----RFEGYCIDLLRELSTHLGFTYEIRLV-EDGK 60
Query: 517 Y--DDLINGVYD 526
Y D +NG ++
Sbjct: 61 YGAQDDVNGQWN 72
>pdb|3QLT|A Chain A, Crystal Structure Of A Gluk2 (Glur6) Glycan Wedge
Homodimer Assembly
pdb|3QLT|B Chain B, Crystal Structure Of A Gluk2 (Glur6) Glycan Wedge
Homodimer Assembly
pdb|3QLU|C Chain C, Crystal Structure Of The Gluk2GLUK5 (GLUR6KA2) ATD DIMER
ASSEMBLY
pdb|3QLU|D Chain D, Crystal Structure Of The Gluk2GLUK5 (GLUR6KA2) ATD DIMER
ASSEMBLY
Length = 395
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 60/289 (20%), Positives = 111/289 (38%), Gaps = 60/289 (20%)
Query: 156 KCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLAEALQNVSSSEIQSRLVLPPISSISD 215
+ I DL + + W+ V +Y+ DS L L E ++ S ++ ++ P +D
Sbjct: 127 RAILDLVQFFKWKTVTVVYD------DSTGLIRLQELIKAPSRYNLRLKIRQLP----AD 176
Query: 216 PKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGLVGKDSVWIVTNTVANALD 275
K+A L K + ++ S +M + +A M ++ + +I T ALD
Sbjct: 177 TKDA--KPLLKEMKRGKEFHVIFDCSHEMAAGILKQALNMSMMTEYYHYIFTTLDLFALD 234
Query: 276 ------------------SLNTTVISSMEGTLGIKXXXXXXXXPYKEFSALFRRNFTSEY 317
+ NT V S +E K P K S L
Sbjct: 235 VEPYRYSGVNMTGFRILNTENTQVSSIIE-----KWSMERLQAPPKPDSGLL-------- 281
Query: 318 PEEDHFHPSIHALRAHDSIKIITEAIGR--------LNYNISSPEMLLRQMLS----SDF 365
D F + AL +D++ +++ A+ + L N P + +S + +
Sbjct: 282 ---DGFMTTDAAL-MYDAVHVVSVAVQQFPQMTVSSLQCNRHKPWRFGTRFMSLIKEAHW 337
Query: 366 SGLSGKIRFKDGELLNAD-TLRIVNVVGKKYKELDFWLPNFGFSKTSSK 413
GL+G+I F L D L ++++ + +++ W P G + T S+
Sbjct: 338 EGLTGRITFNKTNGLRTDFDLDVISLKEEGLEKIGTWDPASGLNMTESQ 386
>pdb|3Q41|A Chain A, Crystal Structure Of The Glun1 N-Terminal Domain (Ntd)
pdb|3Q41|B Chain B, Crystal Structure Of The Glun1 N-Terminal Domain (Ntd)
pdb|3Q41|C Chain C, Crystal Structure Of The Glun1 N-Terminal Domain (Ntd)
Length = 384
Score = 29.3 bits (64), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 53/125 (42%), Gaps = 14/125 (11%)
Query: 144 LIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGK-LALLAEALQNVSSSEIQ 202
+R S Q ++ R YNW + + D+ G + K L L E ++ + +Q
Sbjct: 117 FLRTVPPYSHQSSVWFEMMRVYNWNHIILLVSDDHEGRAAQKRLETLLEERESKAEKVLQ 176
Query: 203 SRLVLPPISSISDP-KEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGLVGKD 261
DP + V L + ++ ++RV I+L AS D ++ A + + G
Sbjct: 177 F-----------DPGTKNVTALLMEARELEARV-IILSASEDDAATVYRAAAMLNMTGSG 224
Query: 262 SVWIV 266
VW+V
Sbjct: 225 YVWLV 229
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.386
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,925,590
Number of Sequences: 62578
Number of extensions: 593691
Number of successful extensions: 1422
Number of sequences better than 100.0: 38
Number of HSP's better than 100.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 1390
Number of HSP's gapped (non-prelim): 38
length of query: 550
length of database: 14,973,337
effective HSP length: 104
effective length of query: 446
effective length of database: 8,465,225
effective search space: 3775490350
effective search space used: 3775490350
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)