Query 008863
Match_columns 550
No_of_seqs 281 out of 2762
Neff 10.5
Searched_HMMs 29240
Date Mon Mar 25 13:29:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008863.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008863hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3kg2_A Glutamate receptor 2; I 100.0 6.3E-59 2.2E-63 510.8 39.8 448 34-547 2-481 (823)
2 3o21_A Glutamate receptor 3; p 100.0 2.5E-49 8.5E-54 395.1 39.8 353 32-410 3-380 (389)
3 4f11_A Gamma-aminobutyric acid 100.0 1.3E-48 4.5E-53 396.9 36.4 350 31-404 11-404 (433)
4 3hsy_A Glutamate receptor 2; l 100.0 3E-48 1E-52 386.0 34.3 349 34-410 2-374 (376)
5 4gpa_A Glutamate receptor 4; P 100.0 9.2E-47 3.2E-51 378.2 41.3 351 32-410 3-378 (389)
6 3om0_A Glutamate receptor, ion 100.0 9.9E-48 3.4E-52 385.1 34.1 357 33-410 3-381 (393)
7 3saj_A Glutamate receptor 1; r 100.0 6E-47 2.1E-51 377.9 35.7 349 31-409 7-376 (384)
8 3h6g_A Glutamate receptor, ion 100.0 3.6E-46 1.2E-50 374.2 37.3 358 33-411 3-384 (395)
9 1jdp_A NPR-C, atrial natriuret 100.0 1.1E-45 3.9E-50 376.0 40.8 358 31-406 6-397 (441)
10 2e4u_A Metabotropic glutamate 100.0 2.4E-45 8.1E-50 383.2 42.0 379 32-449 12-487 (555)
11 3sm9_A Mglur3, metabotropic gl 100.0 9.5E-46 3.3E-50 377.9 36.5 356 31-402 10-462 (479)
12 1dp4_A Atrial natriuretic pept 100.0 1.9E-45 6.5E-50 374.1 34.7 357 33-406 1-399 (435)
13 3qek_A NMDA glutamate receptor 100.0 3.7E-45 1.3E-49 365.3 33.9 322 32-402 3-368 (384)
14 3ks9_A Mglur1, metabotropic gl 100.0 1.8E-44 6E-49 370.2 37.5 358 31-402 14-474 (496)
15 3mq4_A Mglur7, metabotropic gl 100.0 9.7E-46 3.3E-50 378.9 26.0 357 32-402 14-467 (481)
16 3qel_B Glutamate [NMDA] recept 100.0 2.3E-41 7.8E-46 333.0 25.1 327 33-408 3-355 (364)
17 3i45_A Twin-arginine transloca 100.0 1.1E-39 3.9E-44 326.1 33.2 351 32-409 3-365 (387)
18 3h5l_A Putative branched-chain 100.0 1E-39 3.6E-44 329.9 30.1 337 33-395 13-388 (419)
19 3td9_A Branched chain amino ac 100.0 2.2E-38 7.5E-43 314.4 34.0 342 32-404 14-363 (366)
20 4f06_A Extracellular ligand-bi 100.0 1.7E-38 5.8E-43 315.3 32.3 342 33-396 4-353 (371)
21 3ipc_A ABC transporter, substr 100.0 3.2E-38 1.1E-42 312.1 30.9 341 34-403 2-351 (356)
22 3i09_A Periplasmic branched-ch 100.0 1.3E-37 4.4E-42 309.9 34.1 335 33-394 3-342 (375)
23 4gnr_A ABC transporter substra 100.0 2.4E-37 8.3E-42 305.2 34.1 337 31-400 4-350 (353)
24 3n0w_A ABC branched chain amin 100.0 1.4E-37 4.7E-42 310.1 32.2 337 31-394 3-346 (379)
25 3hut_A Putative branched-chain 100.0 3.4E-37 1.2E-41 305.0 33.9 343 33-403 3-353 (358)
26 3lkb_A Probable branched-chain 100.0 5.1E-38 1.7E-42 314.8 27.0 352 33-410 6-381 (392)
27 1usg_A Leucine-specific bindin 100.0 5.1E-37 1.7E-41 302.2 32.8 337 34-398 2-345 (346)
28 4evq_A Putative ABC transporte 100.0 1.1E-36 3.9E-41 303.2 35.2 344 33-403 15-363 (375)
29 4eyg_A Twin-arginine transloca 100.0 8.5E-37 2.9E-41 303.3 32.9 345 32-403 4-359 (368)
30 3n0x_A Possible substrate bind 100.0 5.2E-37 1.8E-41 305.1 28.5 330 33-392 3-346 (374)
31 3eaf_A ABC transporter, substr 100.0 2E-36 6.7E-41 303.0 32.1 342 33-405 3-373 (391)
32 3lop_A Substrate binding perip 100.0 4.6E-36 1.6E-40 297.4 32.1 340 32-397 3-355 (364)
33 3sg0_A Extracellular ligand-bi 100.0 1.3E-35 4.4E-40 296.9 22.7 338 33-398 26-385 (386)
34 1pea_A Amidase operon; gene re 100.0 1.8E-33 6.1E-38 280.9 34.4 345 32-401 5-357 (385)
35 3snr_A Extracellular ligand-bi 100.0 7.9E-34 2.7E-38 281.3 26.4 336 33-398 6-361 (362)
36 3ckm_A YRAM (HI1655), LPOA; pe 100.0 4.7E-28 1.6E-32 235.6 20.2 313 35-400 3-321 (327)
37 2h4a_A YRAM (HI1655); perplasm 100.0 4E-28 1.4E-32 233.3 19.4 309 36-399 2-318 (325)
38 1pb7_A N-methyl-D-aspartate re 99.4 2.3E-13 7.9E-18 129.4 4.6 91 453-548 4-137 (292)
39 2rc8_A Glutamate [NMDA] recept 99.2 1.9E-12 6.4E-17 123.3 2.7 60 486-547 67-135 (294)
40 2a5s_A N-methyl-D-aspartate re 99.2 7.5E-12 2.6E-16 118.5 4.8 61 486-548 56-125 (284)
41 3g3k_A Glutamate receptor, ion 99.0 1.5E-10 5.3E-15 107.8 4.7 91 452-548 3-102 (259)
42 1yae_A Glutamate receptor, ion 99.0 3.2E-10 1.1E-14 108.9 4.4 90 451-548 11-111 (312)
43 2v3u_A Glutamate receptor delt 98.9 8.1E-10 2.8E-14 103.2 4.8 87 452-548 2-98 (265)
44 1mqi_A Glutamate receptor 2; G 98.8 3.3E-09 1.1E-13 98.9 5.2 88 452-547 3-101 (263)
45 4gvo_A LMO2349 protein; struct 98.8 2.5E-09 8.7E-14 98.4 3.8 79 453-547 9-88 (243)
46 3i6v_A Periplasmic His/Glu/Gln 98.6 1.7E-08 5.9E-13 92.1 4.9 80 452-547 4-83 (232)
47 4h5g_A Amino acid ABC superfam 98.6 1.9E-08 6.4E-13 92.6 3.9 82 454-548 13-94 (243)
48 3ksm_A ABC-type sugar transpor 98.5 1.7E-05 5.9E-10 74.0 20.8 209 35-266 1-219 (276)
49 3kbr_A Cyclohexadienyl dehydra 98.4 1.1E-07 3.8E-12 86.9 4.5 79 453-547 15-93 (239)
50 3k4u_A Binding component of AB 98.4 1.1E-07 3.9E-12 87.3 4.4 79 453-547 5-83 (245)
51 3kzg_A Arginine 3RD transport 98.4 1.7E-07 5.7E-12 85.7 5.0 79 453-547 3-82 (237)
52 3tql_A Arginine-binding protei 98.4 3E-07 1E-11 83.1 6.1 80 453-548 2-81 (227)
53 3del_B Arginine binding protei 98.4 1.9E-07 6.4E-12 85.6 4.6 79 453-547 11-89 (242)
54 1lst_A Lysine, arginine, ornit 98.4 2.1E-07 7.3E-12 85.0 4.5 79 453-547 4-82 (239)
55 3hv1_A Polar amino acid ABC up 98.4 2.3E-07 8E-12 86.5 4.7 79 453-547 21-99 (268)
56 3brq_A HTH-type transcriptiona 98.3 9.6E-06 3.3E-10 76.6 15.8 201 33-259 18-226 (296)
57 4dz1_A DALS D-alanine transpor 98.3 3.9E-07 1.3E-11 84.5 5.8 81 452-548 28-108 (259)
58 4f3p_A Glutamine-binding perip 98.3 4E-07 1.4E-11 83.8 5.7 81 451-548 22-102 (249)
59 3h75_A Periplasmic sugar-bindi 98.3 8.1E-05 2.8E-09 72.2 22.3 209 34-259 3-231 (350)
60 2h3h_A Sugar ABC transporter, 98.3 5.6E-05 1.9E-09 72.0 20.8 199 35-258 2-207 (313)
61 1ii5_A SLR1257 protein; membra 98.3 5.6E-07 1.9E-11 81.7 6.4 78 452-543 3-80 (233)
62 1dbq_A Purine repressor; trans 98.3 3.6E-05 1.2E-09 72.4 19.2 202 33-259 6-213 (289)
63 3l49_A ABC sugar (ribose) tran 98.3 5.4E-05 1.9E-09 71.2 20.4 203 33-258 4-216 (291)
64 2rjo_A Twin-arginine transloca 98.3 0.00019 6.6E-09 68.9 24.2 205 33-258 4-222 (332)
65 2qh8_A Uncharacterized protein 98.3 3.7E-05 1.3E-09 72.8 18.7 186 33-242 7-203 (302)
66 4eq9_A ABC transporter substra 98.3 3.2E-07 1.1E-11 84.1 3.8 79 453-548 8-87 (246)
67 2iee_A ORF2, probable ABC tran 98.3 4.5E-07 1.5E-11 84.8 4.7 82 453-547 21-102 (271)
68 2fvy_A D-galactose-binding per 98.3 0.00019 6.4E-09 68.1 22.8 205 34-256 2-226 (309)
69 3brs_A Periplasmic binding pro 98.2 0.00014 4.9E-09 68.2 21.1 202 33-258 4-215 (289)
70 3o1i_D Periplasmic protein TOR 98.2 5E-05 1.7E-09 72.0 17.7 207 33-258 4-218 (304)
71 2y7i_A STM4351; arginine-bindi 98.2 8.7E-07 3E-11 80.2 4.9 79 453-547 6-84 (229)
72 3rot_A ABC sugar transporter, 98.2 6.3E-05 2.2E-09 71.0 17.8 205 34-258 3-213 (297)
73 2x7x_A Sensor protein; transfe 98.2 0.00014 4.8E-09 69.6 20.2 208 33-266 5-220 (325)
74 3d02_A Putative LACI-type tran 98.2 0.00027 9.1E-09 66.8 21.9 205 33-258 3-214 (303)
75 3g1w_A Sugar ABC transporter; 98.2 0.00045 1.5E-08 65.3 23.5 211 34-267 4-220 (305)
76 3o74_A Fructose transport syst 98.2 6.6E-05 2.3E-09 69.8 17.2 210 34-268 2-215 (272)
77 2qu7_A Putative transcriptiona 98.2 3.2E-05 1.1E-09 72.7 15.1 202 33-259 7-213 (288)
78 3lft_A Uncharacterized protein 98.2 0.00021 7.3E-09 67.3 20.8 200 34-257 2-210 (295)
79 3mpk_A Virulence sensor protei 98.2 1.6E-06 5.5E-11 80.7 5.6 81 452-548 31-111 (267)
80 2vk2_A YTFQ, ABC transporter p 98.2 0.00021 7.1E-09 67.7 20.4 205 34-259 2-217 (306)
81 1wdn_A GLNBP, glutamine bindin 98.1 1.6E-06 5.4E-11 78.2 5.1 78 453-547 3-80 (226)
82 2fn9_A Ribose ABC transporter, 98.1 0.00015 5E-09 68.2 18.9 198 35-257 3-215 (290)
83 2fep_A Catabolite control prot 98.1 8.5E-05 2.9E-09 69.8 17.1 202 32-259 14-221 (289)
84 2q88_A EHUB, putative ABC tran 98.1 1.4E-06 4.8E-11 80.5 4.6 79 453-547 13-91 (257)
85 3lkv_A Uncharacterized conserv 98.1 0.00013 4.5E-09 68.9 18.3 189 32-243 6-204 (302)
86 1tjy_A Sugar transport protein 98.1 0.00035 1.2E-08 66.5 21.1 197 36-258 5-213 (316)
87 3c3k_A Alanine racemase; struc 98.1 0.00019 6.5E-09 67.2 18.9 199 33-259 7-210 (285)
88 3dbi_A Sugar-binding transcrip 98.1 6.3E-05 2.1E-09 72.6 15.9 205 33-260 60-269 (338)
89 3h7m_A Sensor protein; histidi 98.1 2.5E-06 8.7E-11 77.4 5.6 79 452-547 10-88 (234)
90 1jx6_A LUXP protein; protein-l 98.1 0.00015 5E-09 70.0 18.5 209 31-257 40-258 (342)
91 2pyy_A Ionotropic glutamate re 98.1 1.5E-06 5.1E-11 78.5 3.8 77 453-546 3-79 (228)
92 3l6u_A ABC-type sugar transpor 98.1 0.00034 1.2E-08 65.7 20.3 202 33-258 7-220 (293)
93 2o20_A Catabolite control prot 98.1 0.00015 5.3E-09 69.6 18.1 203 33-259 62-265 (332)
94 2iks_A DNA-binding transcripti 98.1 0.00019 6.7E-09 67.5 18.3 202 33-259 19-223 (293)
95 2ioy_A Periplasmic sugar-bindi 98.1 0.00063 2.2E-08 63.5 21.7 199 35-257 2-207 (283)
96 3gbv_A Putative LACI-family tr 98.1 0.00019 6.5E-09 67.9 18.0 213 32-268 6-232 (304)
97 3bbl_A Regulatory protein of L 98.0 8.6E-05 2.9E-09 69.7 15.2 203 33-259 3-214 (287)
98 3egc_A Putative ribose operon 98.0 4.9E-05 1.7E-09 71.6 13.5 203 33-259 7-212 (291)
99 3k4h_A Putative transcriptiona 98.0 0.0002 6.8E-09 67.3 17.5 204 33-259 7-218 (292)
100 3d8u_A PURR transcriptional re 98.0 0.00017 5.8E-09 67.1 16.9 201 34-259 3-207 (275)
101 3m9w_A D-xylose-binding peripl 98.0 0.00066 2.3E-08 64.4 21.3 202 34-258 2-213 (313)
102 3clk_A Transcription regulator 98.0 8.1E-05 2.8E-09 70.0 14.3 201 33-259 7-211 (290)
103 2pvu_A ARTJ; basic amino acid 98.0 5.1E-06 1.7E-10 77.5 5.9 79 452-547 41-119 (272)
104 3k9c_A Transcriptional regulat 98.0 0.00064 2.2E-08 63.7 19.7 200 33-260 11-212 (289)
105 2hsg_A Glucose-resistance amyl 97.9 0.00024 8.1E-09 68.2 16.5 200 33-258 59-264 (332)
106 2rgy_A Transcriptional regulat 97.9 9.7E-05 3.3E-09 69.5 13.5 203 33-259 7-215 (290)
107 1qpz_A PURA, protein (purine n 97.9 0.0004 1.4E-08 66.9 18.1 205 33-259 57-264 (340)
108 2h0a_A TTHA0807, transcription 97.9 8.7E-05 3E-09 69.2 12.9 199 36-260 1-207 (276)
109 3qk7_A Transcriptional regulat 97.9 0.00017 5.7E-09 68.0 14.6 202 33-260 5-214 (294)
110 3gv0_A Transcriptional regulat 97.9 0.00023 7.7E-09 66.8 15.3 203 33-260 7-215 (288)
111 3kke_A LACI family transcripti 97.9 0.00022 7.4E-09 67.5 15.1 201 33-259 14-223 (303)
112 8abp_A L-arabinose-binding pro 97.9 0.0011 3.7E-08 62.7 19.6 207 34-259 2-223 (306)
113 3qax_A Probable ABC transporte 97.9 6.7E-06 2.3E-10 76.3 3.8 78 453-546 31-108 (268)
114 3gyb_A Transcriptional regulat 97.9 5.9E-05 2E-09 70.5 10.4 196 33-259 4-202 (280)
115 3jy6_A Transcriptional regulat 97.9 0.00081 2.8E-08 62.5 18.1 205 33-265 6-213 (276)
116 2yln_A Putative ABC transporte 97.9 9.3E-06 3.2E-10 76.3 4.5 79 453-547 57-136 (283)
117 2vha_A Periplasmic binding tra 97.8 9.2E-06 3.1E-10 76.4 4.4 78 453-546 17-101 (287)
118 3ctp_A Periplasmic binding pro 97.8 0.00018 6.1E-09 69.1 13.4 196 33-260 59-258 (330)
119 3tb6_A Arabinose metabolism tr 97.8 0.00041 1.4E-08 65.3 15.7 205 34-260 15-228 (298)
120 3e61_A Putative transcriptiona 97.8 0.00071 2.4E-08 62.9 16.9 195 33-260 7-204 (277)
121 1xt8_A Putative amino-acid tra 97.8 1.7E-05 5.9E-10 74.7 5.7 79 453-547 44-125 (292)
122 3g85_A Transcriptional regulat 97.8 0.0003 1E-08 66.0 14.1 202 33-260 10-215 (289)
123 3hcw_A Maltose operon transcri 97.8 0.0013 4.4E-08 61.8 18.5 203 33-260 6-219 (295)
124 2yjp_A Putative ABC transporte 97.8 1.5E-05 5.2E-10 75.1 4.9 79 453-547 55-136 (291)
125 4i62_A Amino acid ABC transpor 97.8 1.2E-05 4.2E-10 74.5 3.8 82 454-548 40-121 (269)
126 3kjx_A Transcriptional regulat 97.7 0.00054 1.8E-08 66.1 15.1 203 32-260 66-274 (344)
127 3bil_A Probable LACI-family tr 97.7 0.0018 6.1E-08 62.5 18.4 201 33-259 65-267 (348)
128 3cs3_A Sugar-binding transcrip 97.7 0.0017 5.9E-08 60.3 17.7 192 33-259 7-203 (277)
129 2dri_A D-ribose-binding protei 97.7 0.0072 2.5E-07 55.8 21.8 198 36-257 3-206 (271)
130 3e3m_A Transcriptional regulat 97.7 0.003 1E-07 61.0 19.6 205 33-260 69-277 (355)
131 2v25_A Major cell-binding fact 97.6 4.3E-05 1.5E-09 70.3 5.3 80 453-547 38-120 (259)
132 1byk_A Protein (trehalose oper 97.6 0.0061 2.1E-07 55.7 19.5 189 35-257 3-196 (255)
133 1gud_A ALBP, D-allose-binding 97.6 0.011 3.9E-07 55.0 21.6 213 35-267 2-226 (288)
134 3s99_A Basic membrane lipoprot 97.6 0.0043 1.5E-07 59.6 18.5 201 32-257 24-230 (356)
135 3huu_A Transcription regulator 97.6 0.0017 5.7E-08 61.3 15.7 198 33-259 21-228 (305)
136 3h5o_A Transcriptional regulat 97.6 0.0019 6.6E-08 62.0 16.2 200 33-260 61-266 (339)
137 3jvd_A Transcriptional regulat 97.5 0.0035 1.2E-07 60.0 17.6 193 33-259 63-257 (333)
138 3uug_A Multiple sugar-binding 97.5 0.0071 2.4E-07 57.7 19.4 209 33-260 2-231 (330)
139 4fe7_A Xylose operon regulator 97.5 0.0038 1.3E-07 61.8 17.9 205 31-260 22-230 (412)
140 3hs3_A Ribose operon repressor 97.5 0.0021 7.2E-08 59.7 15.1 194 33-260 9-205 (277)
141 2fqx_A Membrane lipoprotein TM 97.4 0.012 4.2E-07 55.7 19.5 207 33-266 3-220 (318)
142 1jye_A Lactose operon represso 97.3 0.0094 3.2E-07 57.4 17.5 200 33-260 60-265 (349)
143 3miz_A Putative transcriptiona 97.3 0.00028 9.6E-09 66.6 6.2 202 33-258 12-222 (301)
144 2hqb_A Transcriptional activat 97.3 0.051 1.7E-06 50.8 21.5 196 33-256 4-204 (296)
145 3qi7_A Putative transcriptiona 97.2 0.035 1.2E-06 52.8 19.6 213 33-258 11-250 (371)
146 3h5t_A Transcriptional regulat 96.7 0.0063 2.2E-07 59.0 9.8 204 33-259 67-294 (366)
147 2ozz_A Hypothetical protein YH 95.9 0.0033 1.1E-07 55.7 2.5 56 486-547 29-90 (231)
148 3ixl_A Amdase, arylmalonate de 95.3 0.23 7.8E-06 44.5 12.6 130 89-253 59-201 (240)
149 3s99_A Basic membrane lipoprot 92.2 2.5 8.7E-05 40.2 13.9 90 34-130 149-238 (356)
150 2xed_A Putative maleate isomer 91.3 2.9 0.0001 38.1 12.8 90 156-252 135-228 (273)
151 2fqx_A Membrane lipoprotein TM 91.2 6.2 0.00021 36.8 15.4 125 36-168 131-264 (318)
152 2l82_A Designed protein OR32; 89.5 5 0.00017 29.6 12.8 99 144-258 4-105 (162)
153 2hqb_A Transcriptional activat 87.5 9.1 0.00031 35.2 13.4 122 35-169 127-248 (296)
154 3p7i_A PHND, subunit of alkylp 87.4 0.21 7.3E-06 47.1 2.0 49 492-543 34-83 (321)
155 2q5c_A NTRC family transcripti 87.3 13 0.00045 31.7 19.4 160 34-259 4-163 (196)
156 2eq5_A 228AA long hypothetical 86.6 6.1 0.00021 34.7 11.1 176 34-253 6-195 (228)
157 2pju_A Propionate catabolism o 83.3 23 0.00077 31.0 13.5 164 34-259 12-175 (225)
158 3n5l_A Binding protein compone 83.3 0.41 1.4E-05 44.9 1.8 47 492-541 24-71 (310)
159 3bfj_A 1,3-propanediol oxidore 82.8 5.7 0.0002 38.3 9.8 90 156-252 22-114 (387)
160 3ox4_A Alcohol dehydrogenase 2 82.5 3.3 0.00011 39.9 7.8 92 154-253 18-111 (383)
161 4gd5_A Phosphate ABC transport 81.2 1.8 6E-05 39.7 5.2 49 31-91 35-83 (279)
162 2dgd_A 223AA long hypothetical 78.5 9.3 0.00032 33.4 8.9 91 155-252 96-191 (223)
163 1o2d_A Alcohol dehydrogenase, 74.5 17 0.00058 34.7 10.1 100 142-252 19-120 (371)
164 2zsk_A PH1733, 226AA long hypo 73.9 19 0.00065 31.5 9.6 74 94-201 70-143 (226)
165 1rrm_A Lactaldehyde reductase; 73.2 6.3 0.00021 38.0 6.8 91 156-253 20-111 (386)
166 1jfl_A Aspartate racemase; alp 71.5 17 0.00057 31.9 8.7 39 88-127 65-103 (228)
167 3tpf_A Otcase, ornithine carba 71.0 45 0.0015 30.7 11.5 128 35-203 37-175 (307)
168 1vlj_A NADH-dependent butanol 70.0 12 0.00043 36.2 8.1 90 156-252 32-123 (407)
169 3uhj_A Probable glycerol dehyd 69.8 7.2 0.00025 37.5 6.2 76 156-243 42-117 (387)
170 3r7f_A Aspartate carbamoyltran 69.2 12 0.00043 34.3 7.4 135 35-204 37-179 (304)
171 3g1w_A Sugar ABC transporter; 66.1 38 0.0013 30.7 10.4 123 34-163 127-255 (305)
172 3s81_A Putative aspartate race 65.1 6.7 0.00023 35.5 4.7 40 87-127 89-128 (268)
173 3m9w_A D-xylose-binding peripl 64.7 22 0.00075 32.6 8.5 80 168-257 3-84 (313)
174 3k9c_A Transcriptional regulat 63.9 67 0.0023 28.8 11.6 118 36-163 128-252 (289)
175 2fvy_A D-galactose-binding per 63.3 44 0.0015 30.3 10.3 122 33-163 139-270 (309)
176 2l69_A Rossmann 2X3 fold prote 63.2 38 0.0013 24.1 9.1 51 146-202 55-105 (134)
177 1pvv_A Otcase, ornithine carba 63.0 51 0.0017 30.4 10.2 132 35-204 47-185 (315)
178 3ce9_A Glycerol dehydrogenase; 62.9 26 0.00089 33.1 8.7 109 142-269 12-122 (354)
179 4a8p_A Putrescine carbamoyltra 61.7 1.1E+02 0.0036 28.8 12.7 132 35-204 42-183 (355)
180 3gbv_A Putative LACI-family tr 61.7 25 0.00086 31.9 8.3 86 165-257 6-95 (304)
181 1jq5_A Glycerol dehydrogenase; 60.5 24 0.00084 33.5 8.0 95 142-250 10-106 (370)
182 4h31_A Otcase, ornithine carba 59.0 70 0.0024 30.1 10.6 160 36-237 72-241 (358)
183 4ep1_A Otcase, ornithine carba 58.9 69 0.0024 29.9 10.3 132 35-204 71-209 (340)
184 3l49_A ABC sugar (ribose) tran 58.9 40 0.0014 30.3 9.1 80 168-257 6-87 (291)
185 4a8t_A Putrescine carbamoyltra 58.4 40 0.0014 31.5 8.7 129 35-204 64-205 (339)
186 3ksm_A ABC-type sugar transpor 57.0 40 0.0014 29.9 8.6 123 33-163 126-255 (276)
187 3gd5_A Otcase, ornithine carba 56.4 1.2E+02 0.0043 27.9 12.1 132 35-204 49-187 (323)
188 2qh8_A Uncharacterized protein 56.1 53 0.0018 29.8 9.4 113 35-164 141-256 (302)
189 3l6u_A ABC-type sugar transpor 56.0 37 0.0013 30.5 8.3 82 166-257 7-90 (293)
190 3umf_A Adenylate kinase; rossm 55.8 4.4 0.00015 35.4 1.7 40 89-128 22-61 (217)
191 3grf_A Ornithine carbamoyltran 55.6 59 0.002 30.2 9.3 131 35-203 45-191 (328)
192 3hl0_A Maleylacetate reductase 55.0 19 0.00064 34.1 6.1 84 155-250 22-107 (353)
193 2i6u_A Otcase, ornithine carba 55.0 64 0.0022 29.7 9.4 133 35-204 40-179 (307)
194 4dz1_A DALS D-alanine transpor 54.6 24 0.00082 31.2 6.6 19 219-237 172-190 (259)
195 4edp_A ABC transporter, substr 54.2 5.9 0.0002 37.2 2.5 35 33-75 35-69 (351)
196 3hcw_A Maltose operon transcri 54.0 1.2E+02 0.0042 27.1 12.1 118 35-164 132-260 (295)
197 8abp_A L-arabinose-binding pro 53.6 38 0.0013 30.7 8.0 79 168-257 3-83 (306)
198 3jzd_A Iron-containing alcohol 53.6 21 0.00071 33.8 6.1 97 156-269 25-123 (358)
199 3gyb_A Transcriptional regulat 53.5 43 0.0015 29.9 8.3 118 35-163 119-243 (280)
200 1p99_A Hypothetical protein PG 53.4 16 0.00056 33.5 5.2 45 32-86 38-82 (295)
201 3cs3_A Sugar-binding transcrip 52.2 1.1E+02 0.0037 27.1 10.8 116 36-163 120-244 (277)
202 3lft_A Uncharacterized protein 51.5 97 0.0033 27.9 10.4 113 35-164 134-249 (295)
203 3o74_A Fructose transport syst 51.3 1.3E+02 0.0043 26.4 12.0 118 35-163 121-246 (272)
204 3d02_A Putative LACI-type tran 51.2 61 0.0021 29.2 9.0 81 168-257 5-87 (303)
205 4f2g_A Otcase 1, ornithine car 51.1 44 0.0015 30.8 7.6 129 35-204 46-184 (309)
206 3ojc_A Putative aspartate/glut 50.8 14 0.00048 32.5 4.2 32 94-126 73-104 (231)
207 3uif_A Sulfonate ABC transport 49.5 9.4 0.00032 36.0 3.1 43 494-539 35-79 (348)
208 3uug_A Multiple sugar-binding 48.8 45 0.0015 30.7 7.7 80 168-257 4-85 (330)
209 4dik_A Flavoprotein; TM0755, e 48.6 80 0.0027 30.4 9.5 94 168-272 266-365 (410)
210 2gzm_A Glutamate racemase; enz 46.2 39 0.0013 30.3 6.5 33 94-126 62-94 (267)
211 3sr0_A Adenylate kinase; phosp 46.1 11 0.00036 32.6 2.5 31 98-128 2-32 (206)
212 1js1_X Transcarbamylase; alpha 45.9 1.4E+02 0.0047 27.6 10.1 139 35-204 37-202 (324)
213 3sds_A Ornithine carbamoyltran 45.9 1.7E+02 0.006 27.3 10.9 132 35-204 67-218 (353)
214 3jvd_A Transcriptional regulat 45.4 1.8E+02 0.0062 26.6 13.4 117 35-164 175-299 (333)
215 2oho_A Glutamate racemase; iso 45.3 62 0.0021 29.1 7.8 36 91-126 68-103 (273)
216 1b73_A Glutamate racemase; iso 45.1 95 0.0033 27.5 8.9 121 88-244 54-182 (254)
217 3jy6_A Transcriptional regulat 44.4 73 0.0025 28.2 8.3 79 166-257 6-86 (276)
218 2fn9_A Ribose ABC transporter, 43.4 55 0.0019 29.3 7.3 80 168-257 3-84 (290)
219 3tb6_A Arabinose metabolism tr 43.1 86 0.003 28.0 8.6 79 168-257 16-100 (298)
220 1mkz_A Molybdenum cofactor bio 42.8 1.4E+02 0.0047 24.6 8.9 65 168-240 11-77 (172)
221 3d8u_A PURR transcriptional re 42.6 1.7E+02 0.0059 25.6 10.6 120 35-163 121-248 (275)
222 3rot_A ABC sugar transporter, 42.0 34 0.0011 31.0 5.6 82 168-257 4-87 (297)
223 2ef0_A Ornithine carbamoyltran 41.4 2.1E+02 0.0071 26.1 12.0 132 35-204 46-184 (301)
224 3c3k_A Alanine racemase; struc 41.3 1.3E+02 0.0045 26.7 9.5 117 35-163 125-251 (285)
225 3bbl_A Regulatory protein of L 41.2 1.6E+02 0.0054 26.2 10.0 118 36-163 127-255 (287)
226 2rjo_A Twin-arginine transloca 41.0 1.8E+02 0.0062 26.5 10.6 121 34-163 136-265 (332)
227 3h75_A Periplasmic sugar-bindi 40.8 50 0.0017 30.8 6.7 80 167-257 3-87 (350)
228 1dxh_A Ornithine carbamoyltran 40.6 2.3E+02 0.0078 26.3 10.8 130 35-204 46-186 (335)
229 3dbi_A Sugar-binding transcrip 40.5 84 0.0029 29.0 8.2 88 159-257 53-144 (338)
230 3p6l_A Sugar phosphate isomera 40.5 1.5E+02 0.0053 25.9 9.7 94 155-257 24-129 (262)
231 1ml4_A Aspartate transcarbamoy 40.4 1.5E+02 0.005 27.3 9.3 134 35-204 45-187 (308)
232 1oth_A Protein (ornithine tran 40.1 1.8E+02 0.0063 26.8 10.0 131 35-203 47-184 (321)
233 1tjy_A Sugar transport protein 39.0 44 0.0015 30.7 5.9 81 168-257 4-86 (316)
234 2h0a_A TTHA0807, transcription 38.8 1.8E+02 0.0063 25.4 10.1 116 36-162 116-244 (276)
235 2vvt_A Glutamate racemase; iso 38.7 96 0.0033 28.2 7.9 35 93-127 82-116 (290)
236 3qk7_A Transcriptional regulat 38.6 1.9E+02 0.0064 25.8 10.1 121 35-164 127-256 (294)
237 1dbq_A Purine repressor; trans 38.6 1.2E+02 0.0042 26.9 8.9 118 36-163 128-254 (289)
238 1ta9_A Glycerol dehydrogenase; 38.6 68 0.0023 31.4 7.3 97 156-268 80-178 (450)
239 2qip_A Protein of unknown func 38.3 1.4E+02 0.0048 24.2 8.2 97 156-257 36-134 (165)
240 2dwu_A Glutamate racemase; iso 37.7 2.2E+02 0.0076 25.4 10.2 36 91-126 63-98 (276)
241 2l69_A Rossmann 2X3 fold prote 37.7 1.1E+02 0.0037 21.8 9.2 100 142-257 26-126 (134)
242 2h3h_A Sugar ABC transporter, 37.2 63 0.0021 29.4 6.7 80 169-257 3-83 (313)
243 2pjk_A 178AA long hypothetical 36.3 1.8E+02 0.0062 24.0 8.6 66 165-237 13-87 (178)
244 3kjx_A Transcriptional regulat 36.2 1.5E+02 0.0052 27.3 9.3 119 36-163 187-314 (344)
245 1vlv_A Otcase, ornithine carba 36.0 2.6E+02 0.009 25.7 12.4 133 35-204 59-198 (325)
246 3g85_A Transcriptional regulat 35.9 2.3E+02 0.0078 25.0 10.3 122 36-164 129-258 (289)
247 2eqf_A Tumor necrosis factor, 35.8 10 0.00035 22.4 0.5 13 483-495 21-33 (46)
248 4amu_A Ornithine carbamoyltran 35.7 2.1E+02 0.0072 26.9 9.8 129 35-203 72-210 (365)
249 4ab5_A Transcriptional regulat 35.4 50 0.0017 27.7 5.4 47 489-538 21-67 (222)
250 1ccw_A Protein (glutamate muta 35.3 1.4E+02 0.0048 23.3 7.5 85 169-268 5-93 (137)
251 2o20_A Catabolite control prot 35.0 1.8E+02 0.006 26.6 9.5 117 36-163 182-306 (332)
252 3brq_A HTH-type transcriptiona 34.9 1.6E+02 0.0053 26.2 9.0 84 162-257 14-102 (296)
253 2yxb_A Coenzyme B12-dependent 34.6 1.8E+02 0.0062 23.5 9.7 87 168-269 19-109 (161)
254 2jfq_A Glutamate racemase; cel 34.5 95 0.0032 28.1 7.2 35 93-127 80-114 (286)
255 3gv0_A Transcriptional regulat 34.5 1.6E+02 0.0054 26.2 8.9 120 35-164 128-256 (288)
256 2rgy_A Transcriptional regulat 34.4 1.6E+02 0.0053 26.3 8.8 119 36-163 130-256 (290)
257 1byk_A Protein (trehalose oper 34.2 1.4E+02 0.0048 25.9 8.3 115 36-163 117-236 (255)
258 2x7x_A Sensor protein; transfe 34.1 1.5E+02 0.0053 26.9 8.9 81 167-257 6-88 (325)
259 1jx6_A LUXP protein; protein-l 34.1 1E+02 0.0035 28.4 7.7 83 168-257 44-129 (342)
260 2fep_A Catabolite control prot 34.0 1.6E+02 0.0055 26.2 8.9 118 36-163 135-262 (289)
261 1zuw_A Glutamate racemase 1; ( 34.0 1.3E+02 0.0044 27.0 7.9 32 96-127 65-96 (272)
262 3kke_A LACI family transcripti 34.0 80 0.0027 28.6 6.8 87 159-257 7-95 (303)
263 2lnd_A De novo designed protei 33.9 1.2E+02 0.0039 21.0 5.9 42 216-257 36-78 (112)
264 3k4h_A Putative transcriptiona 33.7 69 0.0024 28.6 6.3 80 166-257 7-93 (292)
265 3lkv_A Uncharacterized conserv 33.6 1.6E+02 0.0054 26.7 8.7 114 34-164 140-256 (302)
266 2is8_A Molybdopterin biosynthe 33.5 1.5E+02 0.0053 24.0 7.7 49 184-240 21-70 (164)
267 1gud_A ALBP, D-allose-binding 33.5 2E+02 0.0068 25.5 9.4 120 34-162 133-260 (288)
268 3clk_A Transcription regulator 33.4 1.5E+02 0.0051 26.4 8.5 119 36-164 127-253 (290)
269 1y80_A Predicted cobalamin bin 33.3 2.2E+02 0.0074 24.1 9.1 88 168-269 89-180 (210)
270 3dnf_A ISPH, LYTB, 4-hydroxy-3 33.3 1.5E+02 0.005 27.0 7.9 54 73-126 186-240 (297)
271 3ix1_A N-formyl-4-amino-5-amin 33.3 25 0.00086 32.0 3.2 47 486-535 16-62 (302)
272 3d6n_B Aspartate carbamoyltran 33.1 72 0.0024 29.0 6.0 134 36-204 37-178 (291)
273 3h5o_A Transcriptional regulat 32.8 2.9E+02 0.0098 25.2 12.4 121 36-164 180-307 (339)
274 3omb_A Extracellular solute-bi 32.6 29 0.00098 34.9 3.7 18 59-77 61-78 (535)
275 1qpz_A PURA, protein (purine n 32.6 1.7E+02 0.0057 26.9 8.9 118 36-163 179-305 (340)
276 3t6k_A Response regulator rece 32.5 1.4E+02 0.0049 22.6 7.3 59 183-256 14-74 (136)
277 3e3m_A Transcriptional regulat 32.4 1.3E+02 0.0046 27.8 8.2 121 36-164 189-318 (355)
278 3rfq_A Pterin-4-alpha-carbinol 32.2 1.3E+02 0.0046 25.0 7.2 63 168-237 31-95 (185)
279 1zq6_A Otcase, ornithine carba 32.2 2.2E+02 0.0077 26.6 9.3 136 35-204 59-226 (359)
280 3iwt_A 178AA long hypothetical 32.2 1.3E+02 0.0046 24.7 7.3 48 185-240 41-89 (178)
281 2ioy_A Periplasmic sugar-bindi 32.1 1.1E+02 0.0037 27.2 7.3 78 169-257 3-83 (283)
282 4es6_A Uroporphyrinogen-III sy 31.9 32 0.0011 30.5 3.5 90 151-254 112-206 (254)
283 3uor_A ABC transporter sugar b 31.8 62 0.0021 31.6 5.9 27 51-77 40-66 (458)
284 4ekn_B Aspartate carbamoyltran 31.8 3E+02 0.01 25.1 11.2 132 35-204 41-184 (306)
285 2yfk_A Aspartate/ornithine car 31.5 3.6E+02 0.012 25.9 12.5 137 37-204 63-225 (418)
286 3huu_A Transcription regulator 31.4 51 0.0017 29.9 4.9 87 159-257 14-107 (305)
287 2xmo_A LMO2642 protein; phosph 31.0 1.1E+02 0.0036 29.7 7.4 14 31-44 36-49 (443)
288 3r8n_P 30S ribosomal protein S 30.7 1.1E+02 0.0039 21.6 5.3 34 371-404 3-42 (82)
289 2qu7_A Putative transcriptiona 30.6 1.4E+02 0.0047 26.5 7.8 117 36-163 124-254 (288)
290 3lmz_A Putative sugar isomeras 30.3 1.7E+02 0.0057 25.6 8.1 94 155-257 32-127 (257)
291 3hs3_A Ribose operon repressor 30.1 2.8E+02 0.0096 24.3 11.2 116 35-164 123-246 (277)
292 3pzy_A MOG; ssgcid, seattle st 29.9 1.1E+02 0.0037 25.0 6.1 62 168-237 8-72 (164)
293 3qsl_A Putative exported prote 29.7 37 0.0013 31.4 3.7 50 487-539 47-96 (346)
294 1oj7_A Hypothetical oxidoreduc 29.6 69 0.0024 30.9 5.6 84 158-252 43-128 (408)
295 1twy_A ABC transporter, peripl 29.2 64 0.0022 28.7 5.2 36 32-75 27-62 (290)
296 3brs_A Periplasmic binding pro 29.0 3E+02 0.01 24.2 13.3 120 35-163 132-258 (289)
297 3zy2_A Putative GDP-fucose pro 28.9 1.6E+02 0.0053 27.5 7.3 89 148-257 261-349 (362)
298 3un6_A Hypothetical protein sa 28.7 26 0.00089 32.7 2.4 77 2-87 18-100 (341)
299 2dri_A D-ribose-binding protei 28.7 2.9E+02 0.01 24.0 11.6 119 35-163 124-249 (271)
300 3grc_A Sensor protein, kinase; 28.6 1.9E+02 0.0065 21.8 7.7 58 183-255 16-75 (140)
301 2w37_A Ornithine carbamoyltran 28.3 3.7E+02 0.013 25.1 10.2 130 35-204 68-207 (359)
302 2bon_A Lipid kinase; DAG kinas 28.1 1.7E+02 0.0058 27.0 8.0 76 168-255 30-105 (332)
303 3hzh_A Chemotaxis response reg 28.0 2.2E+02 0.0074 22.3 8.0 60 183-256 46-109 (157)
304 2g2c_A Putative molybdenum cof 28.0 1.8E+02 0.006 23.7 7.2 64 169-240 7-77 (167)
305 3okf_A 3-dehydroquinate syntha 28.0 2.2E+02 0.0077 27.0 8.7 113 142-268 41-158 (390)
306 3egc_A Putative ribose operon 27.7 75 0.0025 28.5 5.4 80 166-257 7-88 (291)
307 2hsg_A Glucose-resistance amyl 27.2 2.5E+02 0.0086 25.5 9.1 118 36-163 179-306 (332)
308 1f2v_A COBH, precorrin-8X meth 27.1 63 0.0021 27.8 4.1 71 50-130 125-200 (219)
309 3to5_A CHEY homolog; alpha(5)b 26.9 1.9E+02 0.0065 22.5 6.9 59 184-256 23-83 (134)
310 2dgd_A 223AA long hypothetical 26.8 2.3E+02 0.0079 24.2 8.2 70 165-243 2-77 (223)
311 1y81_A Conserved hypothetical 26.7 62 0.0021 25.5 4.0 35 231-269 69-103 (138)
312 3bil_A Probable LACI-family tr 26.6 3.7E+02 0.013 24.6 10.5 117 36-164 186-309 (348)
313 1nrz_A PTS system, sorbose-spe 26.5 2E+02 0.0068 23.4 7.0 80 154-249 14-93 (164)
314 1f3k_A Omega-conotoxin txvii; 26.4 14 0.00048 19.0 0.0 9 484-492 13-21 (26)
315 3tsm_A IGPS, indole-3-glycerol 26.3 3.5E+02 0.012 24.1 9.6 87 156-258 82-171 (272)
316 3i42_A Response regulator rece 26.1 2E+02 0.0068 21.2 9.2 59 183-256 13-73 (127)
317 1ryo_A Serotransferrin; iron t 26.0 77 0.0026 29.4 5.0 43 490-535 18-63 (327)
318 2hzl_A Trap-T family sorbitol/ 25.9 40 0.0014 31.9 3.2 84 1-91 1-88 (365)
319 3e61_A Putative transcriptiona 25.6 1.5E+02 0.0053 26.0 7.1 78 166-257 7-87 (277)
320 1y5e_A Molybdenum cofactor bio 25.5 2.7E+02 0.0093 22.6 8.5 68 165-240 11-80 (169)
321 2zzv_A ABC transporter, solute 25.5 55 0.0019 30.9 4.1 41 33-78 34-74 (361)
322 3gt7_A Sensor protein; structu 25.5 2.4E+02 0.0081 21.9 9.0 59 183-256 17-77 (154)
323 3gl9_A Response regulator; bet 25.4 2E+02 0.007 21.1 8.2 58 184-256 13-72 (122)
324 3uhf_A Glutamate racemase; str 25.4 3.7E+02 0.012 24.0 11.2 84 34-127 24-116 (274)
325 1h45_A Lactoferrin; metal tran 25.0 95 0.0032 28.9 5.4 43 490-535 19-61 (334)
326 3vp7_A Vacuolar protein sortin 24.9 47 0.0016 28.6 3.0 25 489-513 42-67 (220)
327 3fni_A Putative diflavin flavo 24.7 2.6E+02 0.0089 22.3 7.6 89 168-270 5-98 (159)
328 1vsq_C Mannose-specific phosph 24.7 1.9E+02 0.0063 23.7 6.5 80 154-249 17-96 (165)
329 3k6q_A Putative ligand binding 24.4 12 0.0004 29.5 -0.8 35 487-523 36-70 (139)
330 3kto_A Response regulator rece 23.8 2.3E+02 0.008 21.3 8.1 59 183-256 16-78 (136)
331 3ho7_A OXYR; beta-alpha-barrel 23.8 1.2E+02 0.0041 25.5 5.8 49 488-539 23-71 (232)
332 1ou0_A Precorrin-8X methylmuta 23.8 77 0.0026 27.0 4.1 72 49-130 114-188 (207)
333 1ytl_A Acetyl-COA decarboxylas 23.6 1.1E+02 0.0038 25.3 5.0 38 90-129 29-69 (174)
334 3keo_A Redox-sensing transcrip 23.4 1.5E+02 0.0052 25.4 6.0 41 225-269 142-182 (212)
335 2lpm_A Two-component response 23.2 49 0.0017 25.5 2.7 68 171-257 11-80 (123)
336 1gtk_A Porphobilinogen deamina 23.0 1E+02 0.0034 28.3 5.0 22 515-536 60-82 (313)
337 2x7q_A Ca3427, possible thiami 22.7 79 0.0027 29.0 4.5 49 487-537 27-75 (321)
338 3ezx_A MMCP 1, monomethylamine 22.4 3.6E+02 0.012 22.9 9.6 88 169-269 94-186 (215)
339 1jye_A Lactose operon represso 22.4 1.9E+02 0.0067 26.6 7.3 67 162-237 56-124 (349)
340 3o1i_D Periplasmic protein TOR 22.0 76 0.0026 28.5 4.2 81 168-257 6-88 (304)
341 3h5t_A Transcriptional regulat 22.0 2.9E+02 0.01 25.5 8.6 106 48-163 221-333 (366)
342 3e7d_A COBH, precorrin-8X meth 21.9 88 0.003 26.7 4.1 51 80-130 138-193 (212)
343 3gxa_A Outer membrane lipoprot 21.9 1.4E+02 0.005 26.7 5.7 48 31-87 21-69 (275)
344 2fyi_A HTH-type transcriptiona 21.8 1.1E+02 0.0037 25.9 5.0 44 489-535 27-70 (228)
345 2z1a_A 5'-nucleotidase; metal- 21.8 1.8E+02 0.0063 29.2 7.3 122 1-128 1-140 (552)
346 3cf4_G Acetyl-COA decarboxylas 21.7 1.2E+02 0.0042 24.8 5.0 44 86-129 24-70 (170)
347 3lte_A Response regulator; str 21.4 2.5E+02 0.0087 20.7 9.2 60 183-257 16-77 (132)
348 2vk2_A YTFQ, ABC transporter p 21.2 1.5E+02 0.005 26.7 6.1 79 168-257 3-84 (306)
349 3ist_A Glutamate racemase; str 21.1 4.1E+02 0.014 23.6 8.7 131 83-241 54-187 (269)
350 3lua_A Response regulator rece 21.0 2.7E+02 0.0092 20.9 9.0 57 183-254 14-75 (140)
351 1duv_G Octase-1, ornithine tra 21.0 5E+02 0.017 24.0 14.8 132 35-203 45-185 (333)
352 3miz_A Putative transcriptiona 20.9 3.1E+02 0.011 24.3 8.2 69 159-237 5-76 (301)
353 4dik_A Flavoprotein; TM0755, e 20.8 5.5E+02 0.019 24.5 17.3 153 35-208 231-389 (410)
354 4ddd_A Immunogenic protein; ss 20.8 66 0.0023 29.8 3.5 50 486-538 44-97 (327)
355 3kbq_A Protein TA0487; structu 20.7 2.7E+02 0.0092 22.9 6.8 45 185-237 24-68 (172)
356 2ql3_A Probable transcriptiona 20.5 1.3E+02 0.0044 24.8 5.2 45 489-536 18-62 (209)
357 3iv7_A Alcohol dehydrogenase I 20.4 75 0.0026 30.1 3.8 95 156-269 26-122 (364)
358 2jfn_A Glutamate racemase; cel 20.4 4.6E+02 0.016 23.4 11.6 38 91-128 78-115 (285)
359 3qax_A Probable ABC transporte 20.4 33 0.0011 30.2 1.3 19 219-237 167-185 (268)
360 2zzv_A ABC transporter, solute 20.2 77 0.0026 29.9 3.9 49 492-540 53-103 (361)
361 3f6c_A Positive transcription 20.2 1.9E+02 0.0065 21.6 5.8 61 183-257 11-73 (134)
362 2qv7_A Diacylglycerol kinase D 20.2 4.3E+02 0.015 24.2 9.2 77 168-254 25-102 (337)
No 1
>3kg2_A Glutamate receptor 2; ION channel, membrane protein, cell membrane, glycoprotein, transport, membrane, postsynaptic cell membrane, editing; HET: ZK1 NAG BMA; 3.60A {Rattus norvegicus}
Probab=100.00 E-value=6.3e-59 Score=510.78 Aligned_cols=448 Identities=16% Similarity=0.241 Sum_probs=373.2
Q ss_pred cEEEEEEEecCCccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCC-CHHHHHHHHHHhhhcCCeEEEEcCCChHHHHH
Q 008863 34 VTKIGAIVDANSQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNR-DPFQAATAAQELINKEKVKVIAGMETWEETAV 112 (550)
Q Consensus 34 ~i~IG~i~~~~~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~-~~~~a~~~~~~li~~~~v~aiiG~~~s~~~~~ 112 (550)
+|+||+++|.++ .....|+++|+++||+++ ++|+++++|+++ ++..+.+.+|++++ ++|.|||||.+|..+.+
T Consensus 2 ~ikIG~l~~~tg---~~~~~a~~lAveeiN~~~--~~l~~~~~D~~~~~~~~a~~~~~~l~~-~~V~aiiG~~~S~~~~a 75 (823)
T 3kg2_A 2 SIQIGGLFPRGA---DQEYSAFRVGMVQFSTSE--FRLTPHIDNLEVANSFAVTNAFCSQFS-RGVYAIFGFYDKKSVNT 75 (823)
T ss_dssp EEEEEEEEETTC---HHHHHHHHHHHHHTCCSS--CEEEEEEEEECTTCHHHHHHHHHHHHH-TTCSEEEECCCTTTHHH
T ss_pred cceEEEEeCCCC---hHHHHHHHHHHHHHhcCC--eEEEEEEEEcCCCChHHHHHHHHHHHh-cCcEEEEcCCChhHHHH
Confidence 699999999995 488899999999999985 999999999998 99999999999997 59999999999999999
Q ss_pred HHHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHHcCCeEEEEEEEcCCCCCcchhHHHHHHH
Q 008863 113 VAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLAEA 192 (550)
Q Consensus 113 v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~~~w~~v~ii~~~~~~g~~~~~~~~l~~~ 192 (550)
++++++.+++|+|++.. +.. ..++|+||+.|+ ++.++++++++|||++|++|| ++++| ....+.+.+.
T Consensus 76 ~~~i~~~~~iP~is~~~----~~~--~~~~~~~r~~p~---~~~a~~~l~~~~gw~~v~ii~-d~~~g--~~~~~~~~~~ 143 (823)
T 3kg2_A 76 ITSFCGTLHVSFITPSF----PTD--GTHPFVIQMRPD---LKGALLSLIEYYQWDKFAYLY-DSDRG--LSTLQAVLDS 143 (823)
T ss_dssp HHHHHHHTTCEEEECSC----CCS--SCCSSEEECSCC---CHHHHHHHHHHTTCSEEEEEE-CGGGC--THHHHHHHHH
T ss_pred HHHHhhcCCCceeeccc----CCC--CCCceEEEeCCC---HHHHHHHHHHHCCCCEEEEEE-eCChh--HHHHHHHHHH
Confidence 99999999999999843 322 356899999998 899999999999999999999 67789 9999999999
Q ss_pred HhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcCCCeEEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEEeccchh
Q 008863 193 LQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGLVGKDSVWIVTNTVAN 272 (550)
Q Consensus 193 l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~~ii~~~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~~~~ 272 (550)
+++.| ++|+....++... ...+.|+..++++|+++++|+|++ ++..+.+..++++++++||.+++|+||.++.+..
T Consensus 144 ~~~~g-~~v~~~~~~~~~~--~~~~~d~~~~l~~i~~~~~~vii~-~~~~~~~~~~~~~a~~~g~~~~~~~~i~~~~~~~ 219 (823)
T 3kg2_A 144 AAEKK-WQVTAINVGNINN--DKKDETYRSLFQDLELKKERRVIL-DCERDKVNDIVDQVITIGKHVKGYHYIIANLGFT 219 (823)
T ss_dssp HHHTT-CEEEEEECSSCCS--SSTTTTTTTHHHHTTTTTCCEEEE-ECCHHHHHHHHHHHHHHTTTBTTCEEEECSSBSS
T ss_pred hhccC-CceEEEEeecCCC--CccchhHHHHHHHHHhcCCeEEEE-ECCHHHHHHHHHHHHHcCcCCCCeEEEEeccccc
Confidence 99999 9999887666531 012468999999999999999999 9999999999999999999999999999885443
Q ss_pred hcccCChhHHhhcCceEEEEeecCCCChhHHHHHHHHHHHhhccCCCCCCCCCCchhhHHhHHHHHHHHHHHhhccC---
Q 008863 273 ALDSLNTTVISSMEGTLGIKSYYSDDSSPYKEFSALFRRNFTSEYPEEDHFHPSIHALRAHDSIKIITEAIGRLNYN--- 349 (550)
Q Consensus 273 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~yDav~~~a~Al~~~~~~--- 349 (550)
..+.. .......|++++..+.+. .|.+++|.++|++.|...++......++.+++++||||+++++|++++..+
T Consensus 220 ~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~a~~~YDAv~~la~Al~~~~~~~~~ 296 (823)
T 3kg2_A 220 DGDLL--KIQFGGAEVSGFQIVDYD-DSLVSKFIERWSTLEEKEYPGAHTATIKYTSALTYDAVQVMTEAFRNLRKQRIE 296 (823)
T ss_dssp SSCCS--SSSSSBCEEEEEESSCTT-SHHHHHHHHHHTTSCTTTSTTCCSSCCCHHHHHHHHHHHHHHHHHHHHHTTTCC
T ss_pred ccchH--HhhcCCCCceEeeeecCC-chHHHHHHHHHHhhcccccCCCCccccchhhHHHHHHHHHHHHHHHHHHhhccc
Confidence 32221 111233457777765444 489999999998887766554434457788999999999999999987531
Q ss_pred -----------------CCCHHHHHHHHHhCcccccceeEEEeCCCCCCCCceEEEEeeCCeeeEEEEEeCCCCCccccC
Q 008863 350 -----------------ISSPEMLLRQMLSSDFSGLSGKIRFKDGELLNADTLRIVNVVGKKYKELDFWLPNFGFSKTSS 412 (550)
Q Consensus 350 -----------------~~~~~~l~~~l~~~~~~G~tG~i~f~~~g~~~~~~~~i~~~~~~~~~~vG~w~~~~g~~~~~~ 412 (550)
|.+|.+|+++|++++|+|++|+++||++|++.+..|+|++++++++++||.|++..++.....
T Consensus 297 ~~~~~~~~~c~~~~~~~~~~g~~l~~~l~~~~f~G~tG~i~fd~~G~~~~~~~~I~~~~~~g~~~vg~w~~~~g~~~~~~ 376 (823)
T 3kg2_A 297 ISRRGNAGDCLANPAVPWGQGVEIERALKQVQVEGLSGNIKFDQNGKRINYTINIMELKTNGPRKIGYWSEVDKMVLTED 376 (823)
T ss_dssp CCCSSCCCCTTCSSCCCCTHHHHHHHHHTTCCCEETTEECCBCSSSCBCSCEEEEEEECSSCEEEEEEEETTTEEEECCC
T ss_pred cccCCCCCCccCCCCCcccchHHHHHHHHhcccCCcccCeEECCCCcccccEEEEEEEcCCCCeeEEEEcCCCCceeccC
Confidence 357899999999999999999999999999988999999999999999999999877653321
Q ss_pred CCCcCCcCCCccccCCCCccccCCCCCCCCCCccccCCCCCCeEecccCcccccccEEEecCCCCCCCCCCCcccccchH
Q 008863 413 KHNVGDISSNIAAEGFTGPVIWPGNLINRNPKGWAMPSNQEPMRIGVPTRTFFEKFVVIKDDPLNGNSNDKNLRYDGFSI 492 (550)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~i~wp~~~~~~~p~~~~~~~~~~~~~i~~~~~~~~~pfv~~~~~~~~~~~~~~~~~~~Gfci 492 (550)
. . ...++++++|.+.. ++||++.+++.+. . +++.+++|||+
T Consensus 377 -----------------~----------~------~~~~~~~l~v~~~~---~~P~~~~~~~~~~-~--~~~~~~~G~~~ 417 (823)
T 3kg2_A 377 -----------------D----------T------SGLEQKTVVVTTIL---ESPYVMMKANHAA-L--AGNERYEGYCV 417 (823)
T ss_dssp -----------------C----------C------SSCCCCCEEEEECC---CTTTSEECTTGGG-C--CGGGGEESHHH
T ss_pred -----------------c----------c------cccCCCEEEEEEec---CCCcEEEecCccc-c--CCCCceEEEHH
Confidence 0 0 11345677887654 4889998754321 1 14679999999
Q ss_pred HHHHHHHHhCCCCCCeEEEec-----------CCChHHHHHhhhcccccEEeeceeeeeeeeeEEE
Q 008863 493 ELFRLVVDHLNYDLPYEFVPH-----------DGVYDDLINGVYDKVNYFNYHDKLLFKKKKRLCL 547 (550)
Q Consensus 493 Dll~~la~~l~f~~~~~~~~~-----------~g~w~Gmi~el~~~~ad~a~~~~ti~~~r~~~~~ 547 (550)
||++++++.+||+ |+++++ +|+|+||+++|.+|++|+++++++||.+|++++.
T Consensus 418 dl~~~~a~~l~~~--~~~~~~~~~~~g~~~~~~g~~~~~~~~l~~~~~D~~~~~~~~t~~R~~~~d 481 (823)
T 3kg2_A 418 DLAAEIAKHCGFK--YKLTIVGDGKYGARDADTKIWNGMVGELVYGKADIAIAPLTITLVREEVID 481 (823)
T ss_dssp HHHHHHHHHHTCC--EEEEECSSCCCCCBCTTTCCBCHHHHHHHTTSCSEECSCCBCCHHHHTTEE
T ss_pred HHHHHHHHHcCCc--EEEEEccCCcccccCCCCCchhhHHHhhccccCcEEecceecchhheeeEE
Confidence 9999999999999 555543 4779999999999999999999999999998875
No 2
>3o21_A Glutamate receptor 3; periplasmatic binding protein, oligomerization, membrane, TR protein; HET: NAG; 2.20A {Rattus norvegicus} PDB: 3p3w_A
Probab=100.00 E-value=2.5e-49 Score=395.06 Aligned_cols=353 Identities=16% Similarity=0.246 Sum_probs=301.3
Q ss_pred CCcEEEEEEEecCCccchhHHHHHHHHHHHHhcCC----CCcEEEEEEecCCC-CHHHHHHHHHHhhhcCCeEEEEcCCC
Q 008863 32 EEVTKIGAIVDANSQMGKQAITAMKIAVQNFNSDS----RNHKLSLQIRDHNR-DPFQAATAAQELINKEKVKVIAGMET 106 (550)
Q Consensus 32 ~~~i~IG~i~~~~~~~g~~~~~a~~~Av~~iN~~~----~~~~l~~~~~d~~~-~~~~a~~~~~~li~~~~v~aiiG~~~ 106 (550)
+++|+||+++|+++ .....|+++|+++||+++ +|++|+++++|+++ |+..+.+.+|+|+++ +|.+||||.+
T Consensus 3 ~~~i~IG~i~~~sg---~~~~~a~~lAv~eiN~~g~ill~g~~l~~~~~D~~~~d~~~a~~~a~~li~~-~V~aiiG~~~ 78 (389)
T 3o21_A 3 PNTISIGGLFMRNT---VQEHSAFRFAVQLYNTNQNTTEKPFHLNYHVDHLDSSNSFSVTNAFCSQFSR-GVYAIFGFYD 78 (389)
T ss_dssp CSEEEEEEEECTTC---HHHHHHHHHHHHHHHSCCCTTTCSSEEEEEEEECCTTCHHHHHHHHHHHHTT-TCSCEEECCC
T ss_pred CceeEEEEEeCCCC---HHHHHHHHHHHHHHhcCccccCCCcEEEEEEEecCCCChHHHHHHHHHHHhc-CcEEEEeCCC
Confidence 36899999999995 388999999999999986 48999999999987 999999999999985 9999999999
Q ss_pred hHHHHHHHHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHHcCCeEEEEEEEcCCCCCcchhH
Q 008863 107 WEETAVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKL 186 (550)
Q Consensus 107 s~~~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~~~w~~v~ii~~~~~~g~~~~~~ 186 (550)
|..+.+++++++.++||+|++++. ..+ ..+|.|++.|+ ++.++++++++++|++|++|| |++|| ....
T Consensus 79 S~~~~a~~~i~~~~~iP~Is~s~~----~~~--~~~~~~~~~p~---~~~a~~~~~~~~gw~~vaii~-d~~~g--~~~~ 146 (389)
T 3o21_A 79 QMSMNTLTSFCGALHTSFVTPSFP----TDA--DVQFVIQMRPA---LKGAILSLLSYYKWEKFVYLY-DTERG--FSVL 146 (389)
T ss_dssp TTTHHHHHHHHHHHTCCEEECSCC----CSS--CCSSEEECSCC---SHHHHHHHHHHHTCCEEEEEE-CSTTC--SHHH
T ss_pred hhHHHHHHHHhccCCCceeecCCC----Ccc--CCceEEEEccC---HHHHHHHHHHhCCCCEEEEEE-cCcHH--HHHH
Confidence 999999999999999999987543 233 34667788887 899999999999999999999 77999 9999
Q ss_pred HHHHHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcCCCeEEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEE
Q 008863 187 ALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGLVGKDSVWIV 266 (550)
Q Consensus 187 ~~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~~ii~~~~~~~~~~~il~~a~~~g~~~~~~~~i~ 266 (550)
+.+.+.+++.| +||+....++.. ...|+..+|++|+++++|+||+ .++...+..++++++++||.++.|+||+
T Consensus 147 ~~~~~~~~~~g-~~v~~~~~~~~~-----~~~d~~~~l~~ik~~~~~vii~-~~~~~~~~~i~~qa~~~g~~~~~~~~i~ 219 (389)
T 3o21_A 147 QAIMEAAVQNN-WQVTARSVGNIK-----DVQEFRRIIEEMDRRQEKRYLI-DCEVERINTILEQVVILGKHSRGYHYML 219 (389)
T ss_dssp HHHHHHHHHTT-CEEEEEECTTCC-----CTHHHHHHHHHHHTTTCCEEEE-ESCHHHHHHHHHHHHHHCSCSTTCEEEE
T ss_pred HHHHHHhhcCC-CeEEEEEecCCC-----CcHHHHHHHHHHHhCCCeEEEE-ECCHHHHHHHHHHHHHcCcccCCeEEEE
Confidence 99999999999 999987765431 3368999999999999999999 9999999999999999999999999999
Q ss_pred eccchhhcccCChhHHhhcCceEEEEeecCCCChhHHHHHHHHHHHhhccCCCCCCCCCCchhhHHhHHHHHHHHHHHhh
Q 008863 267 TNTVANALDSLNTTVISSMEGTLGIKSYYSDDSSPYKEFSALFRRNFTSEYPEEDHFHPSIHALRAHDSIKIITEAIGRL 346 (550)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~yDav~~~a~Al~~~ 346 (550)
++.|....++ ........+++++..+.+. +|.+++|.++|+++|...++......+..+++++|||++++++|++++
T Consensus 220 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~a~~~YDAv~~~a~Al~~~ 296 (389)
T 3o21_A 220 ANLGFTDILL--ERVMHGGANITGFQIVNNE-NPMVQQFIQRWVRLDEREFPEAKNAPLKYTSALTHDAILVIAEAFRYL 296 (389)
T ss_dssp CCTTGGGCCC--HHHHHTTCEEEEEESCCTT-CHHHHHHHHHHTTSCTTTSTTSSSSCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCcccccH--HHHhcCCcceEEEEEecCC-ChhHHHHHHHHHhccccccCCCCCCccchhHHHHHHHHHHHHHHHHHH
Confidence 8876554432 1233445677777765444 589999999998877554432222346788999999999999999987
Q ss_pred cc-------------C-------CCCHHHHHHHHHhCcccccceeEEEeCCCCCCCCceEEEEeeCCeeeEEEEEeCCCC
Q 008863 347 NY-------------N-------ISSPEMLLRQMLSSDFSGLSGKIRFKDGELLNADTLRIVNVVGKKYKELDFWLPNFG 406 (550)
Q Consensus 347 ~~-------------~-------~~~~~~l~~~l~~~~~~G~tG~i~f~~~g~~~~~~~~i~~~~~~~~~~vG~w~~~~g 406 (550)
.. | |.+|..|+++|++++|+|++|+++||++|++.+..|+|+++.++++++||+|++..|
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~l~~~~f~G~tG~i~Fd~~G~~~~~~~~i~~~~~~g~~~VG~w~~~~g 376 (389)
T 3o21_A 297 RRQRVDVSRRGSAGDCLANPAVPWSQGIDIERALKMVQVQGMTGNIQFDTYGRRTNYTIDVYEMKVSGSRKAGYWNEYER 376 (389)
T ss_dssp HHTTCCCC-----CCSCSSSCCCTTTTHHHHHHHHTCCEEETTEEECBCTTSBBCSCCEEEEEEETTEEEEEEEEETTTE
T ss_pred HhhCcccccCCCCCcCCCCCCCCCCCcHHHHHHHHhCcccccceeeeeCCCCCcccceEEEEEEcCCCceeeeEEcCCCC
Confidence 62 1 456889999999999999999999999999988999999999999999999999998
Q ss_pred Cccc
Q 008863 407 FSKT 410 (550)
Q Consensus 407 ~~~~ 410 (550)
+...
T Consensus 377 ~~~~ 380 (389)
T 3o21_A 377 FVPF 380 (389)
T ss_dssp EECC
T ss_pred cccc
Confidence 7644
No 3
>4f11_A Gamma-aminobutyric acid type B receptor subunit 2; venus flytrap module, G-protein coupled receptor, signaling; 2.38A {Homo sapiens} PDB: 4f12_A*
Probab=100.00 E-value=1.3e-48 Score=396.88 Aligned_cols=350 Identities=19% Similarity=0.283 Sum_probs=303.0
Q ss_pred CCCcEEEEEEEecCC-----ccchhHHHHHHHHHHHHhcCC--CCcEEEEEEecCCCCHHHHHHHHHHhhhc-CCeEEEE
Q 008863 31 IEEVTKIGAIVDANS-----QMGKQAITAMKIAVQNFNSDS--RNHKLSLQIRDHNRDPFQAATAAQELINK-EKVKVIA 102 (550)
Q Consensus 31 ~~~~i~IG~i~~~~~-----~~g~~~~~a~~~Av~~iN~~~--~~~~l~~~~~d~~~~~~~a~~~~~~li~~-~~v~aii 102 (550)
..++|+||+++|+++ ..|.....|+++|+++||+++ +|++|+++++|+++++..+++.+++|+.+ ++|.+||
T Consensus 11 ~~~~i~IG~~~plsG~~a~~~~g~~~~~~~~lAv~~iN~~g~l~g~~l~l~~~D~~~~~~~a~~~a~~li~~~~~v~avi 90 (433)
T 4f11_A 11 SSPPLSIMGLMPLTKEVAKGSIGRGVLPAVELAIEQIRNESLLRPYFLDLRLYDTECDNAKGLKAFYDAIKYGPNHLMVF 90 (433)
T ss_dssp CCCEEEEEEEECCCTTSTTHHHHHHHHHHHHHHHHHHHHTTTTTTCEEEEEEEECTTCHHHHHHHHHHHHHHSCCCSEEE
T ss_pred CCCceEEEEEEEecCCCCCCccchhHHHHHHHHHHHHhccCCCCCCEEEEEEecCCCCHHHHHHHHHHHHhcCCceEEEE
Confidence 347899999999995 457889999999999999986 68999999999999999999999999986 4999999
Q ss_pred cCCChHHHHHHHHhhccCCccEEeccCCCCCCccc-CCCCCeEEEEecCcHHhHHHHHHHHHHcCCeEEEEEEEcCCCCC
Q 008863 103 GMETWEETAVVAEIASRVQVPILSFAAPAVTPLSM-SRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGG 181 (550)
Q Consensus 103 G~~~s~~~~~v~~~~~~~~iP~is~~~~~~~~~~~-~~~~~~~~~~~p~~~~~~~al~~~l~~~~w~~v~ii~~~~~~g~ 181 (550)
||.+|..+.++++++..+++|+|+++++ ++.++ +..+||+||+.|++..++.++++++++++|++|++|+++++||
T Consensus 91 G~~~S~~~~a~~~~~~~~~ip~is~~~~--~~~l~~~~~~~~~fr~~~~~~~~~~~~~~~~~~~g~~~v~ii~~~~~~g- 167 (433)
T 4f11_A 91 GGVCPSVTSIIAESLQGWNLVQLSFAAT--TPVLADKKKYPYFFRTVPSDNAVNPAILKLLKHYQWKRVGTLTQDVQRF- 167 (433)
T ss_dssp ECCSHHHHHHHHHTHHHHTCEEEESSCC--CGGGGCTTTCTTEEESSCCGGGHHHHHHHHHHHTTCCEEEEEEESSHHH-
T ss_pred CCCcchHHHHHHHHHHhcCceEEEcccC--CccccccccCCceEEecCchHHHHHHHHHHHHHcCCcEEEEEEecchhh-
Confidence 9999999999999999999999999988 67654 4578999999999999999999999999999999999999999
Q ss_pred cchhHHHHHHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcCCCeEEEEEcCCHHHHHHHHHHHHHcCCCCCC
Q 008863 182 DSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGLVGKD 261 (550)
Q Consensus 182 ~~~~~~~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~~ii~~~~~~~~~~~il~~a~~~g~~~~~ 261 (550)
....+.+++.+++.| ++|+....++. |+..++++|+++++|+|++ ++....+..++++++++|+.+++
T Consensus 168 -~~~~~~~~~~~~~~g-~~v~~~~~~~~---------d~~~~l~~i~~~~~~vii~-~~~~~~~~~~~~~a~~~g~~~~~ 235 (433)
T 4f11_A 168 -SEVRNDLTGVLYGED-IEISDTESFSN---------DPCTSVKKLKGNDVRIILG-QFDQNMAAKVFCCAYEENMYGSK 235 (433)
T ss_dssp -HHHHHHHHHHSSSSS-CEEEEEEEESS---------CCHHHHHHHHHTTCCEEEE-ECCHHHHHHHHHHHHHTTCCSTT
T ss_pred -HHHHHHHHHHHHHcC-ceEEEEeccCc---------CHHHHHHHHhhCCCeEEEE-eCcHHHHHHHHHHHHHcCCCCCC
Confidence 999999999999999 99998887753 5678899999999999999 99999999999999999999988
Q ss_pred EEEEEeccchhhc-----------ccCChhHHhhcCceEEEEeecCCC-------ChhHHHHHHHHHHHhhccCCCCCCC
Q 008863 262 SVWIVTNTVANAL-----------DSLNTTVISSMEGTLGIKSYYSDD-------SSPYKEFSALFRRNFTSEYPEEDHF 323 (550)
Q Consensus 262 ~~~i~~~~~~~~~-----------~~~~~~~~~~~~g~~~~~~~~~~~-------~~~~~~f~~~~~~~~~~~~~~~~~~ 323 (550)
|+||.++...... ........+.++|++++..+.... ++..++|.++|+++.. +.
T Consensus 236 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~f~~~y~~~~~-------~~ 308 (433)
T 4f11_A 236 YQWIIPGWYEPSWWEQVHTEANSSRCLRKNLLAAMEGYIGVDFEPLSSKQIKTISGKTPQQYEREYNNKRS-------GV 308 (433)
T ss_dssp CEEEEESCSCTTTTTCC------CCSCHHHHHHHHTTCEEEEECSSCCCCCCCTTSCCHHHHHHHHHHHHT-------TS
T ss_pred eEEEEcCcchHhHhcccccCCCCCCCCHHHHHHHHhCEEEEEEeecCCCCCcccCCCCHHHHHHHHHHhcC-------CC
Confidence 9999998832211 112223456789999888764321 1347778888877621 45
Q ss_pred CCCchhhHHhHHHHHHHHHHHhhccC-----------------CCCHHHHHHHHHhCcccccceeEEEeCCCCCCCCceE
Q 008863 324 HPSIHALRAHDSIKIITEAIGRLNYN-----------------ISSPEMLLRQMLSSDFSGLSGKIRFKDGELLNADTLR 386 (550)
Q Consensus 324 ~~~~~~~~~yDav~~~a~Al~~~~~~-----------------~~~~~~l~~~l~~~~~~G~tG~i~f~~~g~~~~~~~~ 386 (550)
.++.+++++||||+++++|++++..+ +.+++.|+++|++++|+|++|+++| ++|++. ..|.
T Consensus 309 ~~~~~a~~~YDAv~~la~Al~~a~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~~~f~G~tG~v~f-~~Gd~~-~~~~ 386 (433)
T 4f11_A 309 GPSKFHGYAYDGIWVIAKTLQRAMETLHASSRHQRIQDFNYTDHTLGRIILNAMNETNFFGVTGQVVF-RNGERM-GTIK 386 (433)
T ss_dssp CCCTTHHHHHHHHHHHHHHHHHHHHHHHHSSSCCCGGGCSSCCHHHHHHHHHHHHTCEEEETTEEEEE-ETTEEE-CEEE
T ss_pred CcccchhhHHHHHHHHHHHHHHHHHHHhccCCCCcccccccccHHHHHHHHHHHHhcEEEccceEEEE-ecCcee-eeEE
Confidence 67888999999999999999998541 1147899999999999999999999 789986 8999
Q ss_pred EEEeeCCeeeEEEEEeCC
Q 008863 387 IVNVVGKKYKELDFWLPN 404 (550)
Q Consensus 387 i~~~~~~~~~~vG~w~~~ 404 (550)
|++++++++++||.|++.
T Consensus 387 I~~~~~g~~~~VG~~~~~ 404 (433)
T 4f11_A 387 FTQFQDSREVKVGEYNAV 404 (433)
T ss_dssp EEEEETTEEEEEEEEETT
T ss_pred EEEEECCceEEEEEEECC
Confidence 999999999999999863
No 4
>3hsy_A Glutamate receptor 2; ligand-gated ION channel, synapse, cell CELL membrane, endoplasmic reticulum, glycoprotein, ION TRA ionic channel; HET: NAG BMA; 1.75A {Rattus norvegicus} PDB: 3h5v_A* 3h5w_A 3o2j_A* 2wjw_A* 2wjx_A 3n6v_A
Probab=100.00 E-value=3e-48 Score=386.02 Aligned_cols=349 Identities=17% Similarity=0.256 Sum_probs=279.4
Q ss_pred cEEEEEEEecCCccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCC-CCHHHHHHHHHHhhhcCCeEEEEcCCChHHHHH
Q 008863 34 VTKIGAIVDANSQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHN-RDPFQAATAAQELINKEKVKVIAGMETWEETAV 112 (550)
Q Consensus 34 ~i~IG~i~~~~~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~-~~~~~a~~~~~~li~~~~v~aiiG~~~s~~~~~ 112 (550)
+|+||+++|+++ ...+.|+++|+++||++ |++|++++.|+. +|+..+.+.+|+|++ ++|.+||||.+|..+.+
T Consensus 2 ~i~IG~i~~~sg---~~~~~~~~lAv~~iN~~--g~~l~~~~~d~~~~d~~~a~~~~~~li~-~~V~aiiG~~~S~~~~a 75 (376)
T 3hsy_A 2 SIQIGGLFPRGA---DQEYSAFRVGMVQFSTS--EFRLTPHIDNLEVANSFAVTNAFCSQFS-RGVYAIFGFYDKKSVNT 75 (376)
T ss_dssp EEEEEEEEETTC---HHHHHHHHHHHHHTCCS--SCEEEEEEEEECTTCHHHHHHHHHHHHH-TTCSEEEECCCTTTHHH
T ss_pred ceeEEEEeCCCC---HHHHHHHHHHHHHHhcC--CeEEEEEEeecCCCChHHHHHHHHHHHh-cCcEEEECCCchhHHHH
Confidence 699999999984 57899999999999998 899999999965 599999999999998 59999999999999999
Q ss_pred HHHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHHcCCeEEEEEEEcCCCCCcchhHHHHHHH
Q 008863 113 VAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLAEA 192 (550)
Q Consensus 113 v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~~~w~~v~ii~~~~~~g~~~~~~~~l~~~ 192 (550)
++++++.++||+|+++++ . . ...+|+||+.|+ ++.++++++++++|++|++|| |++|| ....+.+.+.
T Consensus 76 v~~~~~~~~ip~is~~~~--~--~--~~~~~~~~~~p~---~~~a~~~~~~~~gw~~vaii~-d~~~g--~~~~~~~~~~ 143 (376)
T 3hsy_A 76 ITSFCGTLHVSFITPSFP--T--D--GTHPFVIQMRPD---LKGALLSLIEYYQWDKFAYLY-DSDRG--LSTLQAVLDS 143 (376)
T ss_dssp HHHHHHHHTCEEEECSCC--C--C--SCCTTEEECSCC---CHHHHHHHHHHTTCCEEEEEE-CSTTC--SHHHHHHHHH
T ss_pred HHHHhccCcCceeecCCC--C--c--ccCCceEEeCcc---HHHHHHHHHHhcCCCEEEEEE-eCchh--HHHHHHHHHH
Confidence 999999999999998765 2 2 245789999887 899999999999999999999 78999 9999999999
Q ss_pred HhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcCCCeEEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEEeccchh
Q 008863 193 LQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGLVGKDSVWIVTNTVAN 272 (550)
Q Consensus 193 l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~~ii~~~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~~~~ 272 (550)
+++.| ++|.....++... .....|++.++++|++.++++|++ .+....+..++++++++||.++.|+||+++....
T Consensus 144 ~~~~g-~~v~~~~~~~~~~--~~~~~d~~~~l~~i~~~~~~vii~-~~~~~~~~~~~~qa~~~g~~~~~~~~i~~~~~~~ 219 (376)
T 3hsy_A 144 AAEKK-WQVTAINVGNINN--DKKDETYRSLFQDLELKKERRVIL-DCERDKVNDIVDQVITIGKHVKGYHYIIANLGFT 219 (376)
T ss_dssp HHHHT-CEEEEEECTTCC----------------------CEEEE-ESCHHHHHHHHHHHHHHTSSGGGCEEEECSSBTT
T ss_pred hhhcC-CeEEEEEeccccc--cccchhHHHHHHHHhhCCCeEEEE-ECCHHHHHHHHHHHHHcccCCCCcEEEEcCCCcc
Confidence 99999 9998776554210 002478999999999999999999 9999999999999999999988899999874322
Q ss_pred hcccCChhHHhhcC---ceEEEEeecCCCChhHHHHHHHHHHHhhccCCCCCCCCCCchhhHHhHHHHHHHHHHHhhcc-
Q 008863 273 ALDSLNTTVISSME---GTLGIKSYYSDDSSPYKEFSALFRRNFTSEYPEEDHFHPSIHALRAHDSIKIITEAIGRLNY- 348 (550)
Q Consensus 273 ~~~~~~~~~~~~~~---g~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~yDav~~~a~Al~~~~~- 348 (550)
..++ .+... +++++..+.+ .+|..++|.++|+++|...++......|+.+++++|||++++++|++++..
T Consensus 220 ~~~~-----~~~~~~~~~~~~~~~~~~-~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~aa~~YDav~~la~Ai~~~~~~ 293 (376)
T 3hsy_A 220 DGDL-----LKIQFGGANVSGFQIVDY-DDSLVSKFIERWSTLEEKEYPGAHTATIKYTSALTYDAVQVMTEAFRNLRKQ 293 (376)
T ss_dssp STTG-----GGSCCTTCEEEEEESCCT-TSHHHHHHHHHHTTSCTTTSTTCSCSSCCHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ccch-----HHhhcCCcCceEEEEecC-CchHHHHHHHHHHhccccccCCCCCcccchhHHHHHHHHHHHHHHHHHHHhc
Confidence 2221 12222 3666665433 458899999999888765554322235788999999999999999999753
Q ss_pred ------------C-------CCCHHHHHHHHHhCcccccceeEEEeCCCCCCCCceEEEEeeCCeeeEEEEEeCCCCCcc
Q 008863 349 ------------N-------ISSPEMLLRQMLSSDFSGLSGKIRFKDGELLNADTLRIVNVVGKKYKELDFWLPNFGFSK 409 (550)
Q Consensus 349 ------------~-------~~~~~~l~~~l~~~~~~G~tG~i~f~~~g~~~~~~~~i~~~~~~~~~~vG~w~~~~g~~~ 409 (550)
| |.+|..|+++|++++|+|++|+|+||++|++.+..|+|+++.++++++||.|++..|+..
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~l~~~~f~G~tG~i~fd~~G~~~~~~~~i~~~~~~g~~~VG~w~~~~g~~~ 373 (376)
T 3hsy_A 294 RIEISRRGNAGDCLANPAVPWGQGVEIERALKQVQVEGLSGNIKFDQNGKRINYTINIMELKTNGPRKIGYWSEVDKMVV 373 (376)
T ss_dssp TCCCSCCCCCCCTTCSSCCCCHHHHHHHHHHHHCCEEETTEEECBCTTSBBCSCEEEEEEEETTEEEEEEEEETTTEEEE
T ss_pred CCccccCCCCCccCCCCCCCcCCcHHHHHHHHhcCcCCCccceeECCCCCCccceEEEEEecCCCceEEEEEcCCCCcee
Confidence 1 346789999999999999999999999999988999999999999999999999888764
Q ss_pred c
Q 008863 410 T 410 (550)
Q Consensus 410 ~ 410 (550)
.
T Consensus 374 ~ 374 (376)
T 3hsy_A 374 T 374 (376)
T ss_dssp C
T ss_pred c
Confidence 3
No 5
>4gpa_A Glutamate receptor 4; PBP fold, ligand-gated ION channel, ION transport, transmembrane AMPA receptor regulating proteins, cornichons, ckamp44; HET: NAG; 2.25A {Rattus norvegicus}
Probab=100.00 E-value=9.2e-47 Score=378.18 Aligned_cols=351 Identities=14% Similarity=0.217 Sum_probs=292.8
Q ss_pred CCcEEEEEEEecCCccchhHHHHHHHHHHHHhcCC----CCcEEEEEEec-CCCCHHHHHHHHHHhhhcCCeEEEEcCCC
Q 008863 32 EEVTKIGAIVDANSQMGKQAITAMKIAVQNFNSDS----RNHKLSLQIRD-HNRDPFQAATAAQELINKEKVKVIAGMET 106 (550)
Q Consensus 32 ~~~i~IG~i~~~~~~~g~~~~~a~~~Av~~iN~~~----~~~~l~~~~~d-~~~~~~~a~~~~~~li~~~~v~aiiG~~~ 106 (550)
+++|+||++||.+ +.+...|+++|+++||+++ ++++|.+...+ ..+++..+.+.+|++++ ++|.|||||.+
T Consensus 3 P~~I~IG~lf~~~---~~~~~~a~~~Av~~iN~~~~ilg~~~~l~~~~~~~~~~~~~~~~~~~~~l~~-~~V~aiiG~~~ 78 (389)
T 4gpa_A 3 PSSVQIGGLFIRN---TDQEYTAFRLAIFLHNTSPNASEAPFNLVPHVDNIETANSFAVTNAFCSQYS-RGVFAIFGLYD 78 (389)
T ss_dssp CSEEEEEEEECTT---CHHHHHHHHHHHHHHHTCSCTTTCSSEEEEEEEECSSCCHHHHHHHHHHHHH-TTCSEEEECCC
T ss_pred CCeEEEEEEEcCC---ChHHHHHHHHHHHHHHhCCCCCCCCEEEEEEEecCCCchHHHHHHHHHHHHh-cCCEEEEeCCc
Confidence 3689999999988 4678899999999999987 35666666655 34688899999999997 69999999999
Q ss_pred hHHHHHHHHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHHcCCeEEEEEEEcCCCCCcchhH
Q 008863 107 WEETAVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKL 186 (550)
Q Consensus 107 s~~~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~~~w~~v~ii~~~~~~g~~~~~~ 186 (550)
|..+.+++++++.++||+++++++ .+ +... |.+++.|. +.+++++++++|+|++|++||+++.++ . ..
T Consensus 79 S~~~~~v~~i~~~~~ip~is~~~~--~~--~~~~--~~~~~~~~---~~~a~~~l~~~~~w~~vaii~~~d~~~--~-~~ 146 (389)
T 4gpa_A 79 KRSVHTLTSFCSALHISLITPSFP--TE--GESQ--FVLQLRPS---LRGALLSLLDHYEWNCFVFLYDTDRGY--S-IL 146 (389)
T ss_dssp TTTHHHHHHHHHHTTCEEEECSCC--CS--SCCS--SEEECSCC---CHHHHHHHHHHTTCCEEEEEECSTTCS--H-HH
T ss_pred cHHHHHHHHHHHHhCCCceecccc--cc--cccc--CCccccCC---HHHHHHHHHHHcCCcEEEEEEecchhh--H-HH
Confidence 999999999999999999998766 33 3333 44555554 567999999999999999999887765 4 56
Q ss_pred HHHHHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcCCCeEEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEE
Q 008863 187 ALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGLVGKDSVWIV 266 (550)
Q Consensus 187 ~~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~~ii~~~~~~~~~~~il~~a~~~g~~~~~~~~i~ 266 (550)
+.+.+.+.+.| ++|.....++. ...+++..++++++.++++|++ .+....+..++++++++|+.++.|+|+.
T Consensus 147 ~~~~~~~~~~g-~~v~~~~~~~~------~~~d~~~~l~~i~~~~~~vIv~-~~~~~~~~~il~~a~~~g~~~~~~~~i~ 218 (389)
T 4gpa_A 147 QAIMEKAGQNG-WHVSAICVENF------NDVSYRQLLEELDRRQEKKFVI-DCEIERLQNILEQIVSVGKHVKGYHYII 218 (389)
T ss_dssp HHHHHHHHTTT-CEEEEEECTTC------CHHHHHHHHHHHHHHTCCEEEE-ECCHHHHHHHHHHHHHHTCSBTTCEEEE
T ss_pred HHHHHHHHhcC-ceEEEEeecCC------cchhHHHHHHHhhccCCcEEEE-EechhHHHHHHHHHHHhCCCCCceEEEE
Confidence 77888899999 99988776554 5589999999999999999999 9999999999999999999999999999
Q ss_pred eccchhhcccCChhHHhhcCceEEEEeecCCCChhHHHHHHHHHHHhhccCCCCCCCCCCchhhHHhHHHHHHHHHHHhh
Q 008863 267 TNTVANALDSLNTTVISSMEGTLGIKSYYSDDSSPYKEFSALFRRNFTSEYPEEDHFHPSIHALRAHDSIKIITEAIGRL 346 (550)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~yDav~~~a~Al~~~ 346 (550)
++.+...... ........++.++....+. ++.+++|.++|++.+...+.. .+..+..+++++||||+++++||+++
T Consensus 219 ~~~~~~~~~~--~~~~~~~~~i~~~~~~~~~-~~~~~~f~~~~~~~~~~~~~~-~~~~~~~~~a~~YDAV~~~A~Al~~~ 294 (389)
T 4gpa_A 219 ANLGFKDISL--ERFIHGGANVTGFQLVDFN-TPMVTKLMDRWKKLDQREYPG-SETPPKYTSALTYDGVLVMAETFRSL 294 (389)
T ss_dssp CSSBGGGSCC--HHHHHHBCEEEEEECSCTT-SHHHHHHHHHHTTSCTTTSTT-TTSCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred eCccccchhh--hhhhhcccceEEEEeecCC-ChHHHHHHHHHHHHhhhhccc-CCCChhHHHHHHHHHHHHHHHHHHHH
Confidence 9887654432 3344556677777765444 488999999887766544322 24567889999999999999999998
Q ss_pred ccC--------------------CCCHHHHHHHHHhCcccccceeEEEeCCCCCCCCceEEEEeeCCeeeEEEEEeCCCC
Q 008863 347 NYN--------------------ISSPEMLLRQMLSSDFSGLSGKIRFKDGELLNADTLRIVNVVGKKYKELDFWLPNFG 406 (550)
Q Consensus 347 ~~~--------------------~~~~~~l~~~l~~~~~~G~tG~i~f~~~g~~~~~~~~i~~~~~~~~~~vG~w~~~~g 406 (550)
..+ |.+|..|.++|++++|+|+||+|+||++|+|.++.|+|++++++++++||.|++..|
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~~~l~~v~f~G~tG~v~Fd~~G~r~~~~~~I~~l~~~~~~~VG~W~~~~g 374 (389)
T 4gpa_A 295 RRQKIDISRRGNAGDCLANPAAPWGQGIDMERTLKQVRIQGLTGNVQFDHYGRRVNYTMDVFELKSTGPRKVGYWNDMDK 374 (389)
T ss_dssp HHTTCCCCCTTCCCCTTCSSCCCCTTHHHHHHHHHTCEEEETTEEEEBCTTSCBCSCEEEEEEEETTEEEEEEEEETTTE
T ss_pred HhhcccccccCCccccccCCCcccchHHHHHHHHHhCceecCceeEEECCCCCCCCCEEEEEEEECCEEEEEEEEECCCC
Confidence 542 457889999999999999999999999999988999999999999999999999888
Q ss_pred Cccc
Q 008863 407 FSKT 410 (550)
Q Consensus 407 ~~~~ 410 (550)
+...
T Consensus 375 l~~~ 378 (389)
T 4gpa_A 375 LVLI 378 (389)
T ss_dssp EEEC
T ss_pred eEEC
Confidence 7654
No 6
>3om0_A Glutamate receptor, ionotropic kainate 5; membrane protein, ION channel; HET: NAG BMA GOL; 1.40A {Rattus norvegicus} PDB: 3om1_A* 3qlu_A* 3qlv_A
Probab=100.00 E-value=9.9e-48 Score=385.14 Aligned_cols=357 Identities=15% Similarity=0.279 Sum_probs=292.9
Q ss_pred CcEEEEEEEecCCccchhHHHHHHHHHHHHhcCC---CCcEEEEEEecCCCCH-HHHHHHHHHhhhcCCeEEEEcCCChH
Q 008863 33 EVTKIGAIVDANSQMGKQAITAMKIAVQNFNSDS---RNHKLSLQIRDHNRDP-FQAATAAQELINKEKVKVIAGMETWE 108 (550)
Q Consensus 33 ~~i~IG~i~~~~~~~g~~~~~a~~~Av~~iN~~~---~~~~l~~~~~d~~~~~-~~a~~~~~~li~~~~v~aiiG~~~s~ 108 (550)
.+||||+++|+++..|.....|+++|+++||+++ +|++|+++++|+++++ ..+...+|+++. ++|.+||||.+|.
T Consensus 3 ~~ikIG~~~~~s~~~G~~~~~a~~lAv~eiN~~ggil~g~~l~~~~~D~~~~~~~~~~~~~~~l~~-~~V~aiiG~~~S~ 81 (393)
T 3om0_A 3 SSLRMAAILDDQTVCGRGERLALALAREQINGIIEVPAKARVEVDIFELQRDSQYETTDTMCQILP-KGVVSVLGPSSSP 81 (393)
T ss_dssp CEEEEEEEECCCCSSCCCHHHHHHHHHHHHHHSCCSSCCCEEEEEEEECCSSCHHHHHHHHHHHGG-GCCSCEECCSSCH
T ss_pred cceeEEEEecCCCcccHHHHHHHHHHHHHHhcCcccccCcEEEEEEEecCCCchhHHHHHHHHHHh-cCcEEEECCCCch
Confidence 4799999999999999999999999999999987 5799999999999975 467788999985 6999999999996
Q ss_pred H-HHHHHHhhccCCccEEeccCCCCCCcccCCCCCeE--EEEecCcHHhHHHHHHHHHHcCCeEEEEEEEcCCCCCcchh
Q 008863 109 E-TAVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYL--IRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGK 185 (550)
Q Consensus 109 ~-~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~--~~~~p~~~~~~~al~~~l~~~~w~~v~ii~~~~~~g~~~~~ 185 (550)
. +.+++++++.+++|+|+++++ + .++..+|++ ||+.|++..++.++++++++++|++|++||++++|| ..+
T Consensus 82 ~~~~a~~~i~~~~~ip~is~~a~--~--~~~~~~~~~~~fr~~p~~~~~~~~~~~~~~~~g~~~vaii~~~~~~g--~~l 155 (393)
T 3om0_A 82 ASASTVSHICGEKEIPHIKVGPE--E--TPRLQYLRFASVSLYPSNEDVSLAVSRILKSFNYPSASLICAKAECL--LRL 155 (393)
T ss_dssp HHHHHHHHHHHHHTCCEEECSCC--C--CC----CCSCCEESSCCHHHHHHHHHHHHHHTTSCCEEEEESSTTHH--HHT
T ss_pred hHHHHHHHHHhccCCCeEeccCC--c--CccccccccceEEecCCHHHHHHHHHHHHHhCCCcEEEEEEeCchHH--HHH
Confidence 5 469999999999999999876 3 334567888 999999999999999999999999999999999988 776
Q ss_pred HHHHHHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcCCCeEEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEE
Q 008863 186 LALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGLVGKDSVWI 265 (550)
Q Consensus 186 ~~~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~~ii~~~~~~~~~~~il~~a~~~g~~~~~~~~i 265 (550)
.+.++ .+.+.| ++|.... ++ ...|++.++++|+++++|+|++ .+....+..++++++++||.++.|+|+
T Consensus 156 ~~~~~-~~~~~g-~~v~~~~-~~-------~~~d~~~~l~~i~~~~~~vii~-~~~~~~~~~~~~~a~~~g~~~~~~~~i 224 (393)
T 3om0_A 156 EELVR-GFLISK-ETLSVRM-LD-------DSRDPTPLLKEIRDDKVSTIII-DANASISHLVLRKASELGMTSAFYKYI 224 (393)
T ss_dssp HHHHH-HHHHSS-SCEEEEE-CC--------CCCSHHHHHHHHHHTCSEEEE-ESCHHHHHHHHHHHHHTTTTSTTCEEE
T ss_pred HHHHH-hhhccC-CeEEEEe-cC-------CCCCHHHHHHHHHhcCCeEEEE-ECCHHHHHHHHHHHHHcCcccCCeEEE
Confidence 66554 466678 8887654 32 2358899999999999999999 999999999999999999999889999
Q ss_pred EeccchhhcccCChhHHhhcCceEEEEeecCCCChhHHHHHHHHHHHhhccCCCCCCCCCCchhhHHhHHHHHHHHHHHh
Q 008863 266 VTNTVANALDSLNTTVISSMEGTLGIKSYYSDDSSPYKEFSALFRRNFTSEYPEEDHFHPSIHALRAHDSIKIITEAIGR 345 (550)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~yDav~~~a~Al~~ 345 (550)
.++......++.. ......|++++..+.+ .+|.+++|.++|+++|...+.......|+.+++++|||++++++|+++
T Consensus 225 ~~~~~~~~~~l~~--~~~~~~~~~g~~~~~~-~~~~~~~f~~~~~~~~~~~~~~~~~~~p~~~a~~~YDAv~~la~Al~~ 301 (393)
T 3om0_A 225 LTTMDFPILHLDG--IVEDSSNILGFSMFNT-SHPFYPEFVRSLNMSWRENCEASTYPGPALSAALMFDAVHVVVSAVRE 301 (393)
T ss_dssp ECCTTGGGCCCTT--TCCSSCSEEEEECCCT-TSTTHHHHHHHHHHHHTTTSCGGGCCSCCHHHHHHHHHHHHHHHHHHH
T ss_pred Eecccccccchhh--hhccCCcEEEEEEecC-CccHHHHHHHHHHHHhhhhccCCCCCCCchHHHHHHhHHHHHHHHHHH
Confidence 9876554333221 1233457777776543 458899999999999874321111134678899999999999999998
Q ss_pred hccC---------------CCCHHHHHHHHHhCcccccceeEEEeCCCCCCCCceEEEEeeCCeeeEEEEEeCCCCCccc
Q 008863 346 LNYN---------------ISSPEMLLRQMLSSDFSGLSGKIRFKDGELLNADTLRIVNVVGKKYKELDFWLPNFGFSKT 410 (550)
Q Consensus 346 ~~~~---------------~~~~~~l~~~l~~~~~~G~tG~i~f~~~g~~~~~~~~i~~~~~~~~~~vG~w~~~~g~~~~ 410 (550)
+... |.++..|+++|++++|+|++|+++||++|++.+..|+|++++++++++||+|++..|+..+
T Consensus 302 ~~~~~~~~~~~~~c~~~~~~~~g~~l~~~l~~~~f~G~tG~i~fd~~G~~~~~~~~i~~~~~~g~~~VG~w~~~~gl~~~ 381 (393)
T 3om0_A 302 LNRSQEIGVKPLACTSANIWPHGTSLMNYLRMVEYDGLTGRVEFNSKGQRTNYTLRILEKSRQGHREIGVWYSNRTLAMN 381 (393)
T ss_dssp HTTTSCCCCCCCCTTCCCCCTTHHHHHHHHTTCCEEETTEEECBCTTSCBCSCEEEEEEEETTEEEEEEEEECC------
T ss_pred HhhcccCcCCCcCCCCCCcccCchHHHHHHHhCCCCCccceEEeCCCCcccceeEEEEEeccCCceEeeeEcCCCCcccc
Confidence 8641 4689999999999999999999999999999889999999999999999999998887654
No 7
>3saj_A Glutamate receptor 1; rossman fold, ION channel, membrane, transport protein; HET: NAG BMA MAN; 2.50A {Rattus norvegicus}
Probab=100.00 E-value=6e-47 Score=377.94 Aligned_cols=349 Identities=15% Similarity=0.251 Sum_probs=296.5
Q ss_pred CCCcEEEEEEEecCCccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCC-CHHHHHHHHHHhhhcCCeEEEEcCCChHH
Q 008863 31 IEEVTKIGAIVDANSQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNR-DPFQAATAAQELINKEKVKVIAGMETWEE 109 (550)
Q Consensus 31 ~~~~i~IG~i~~~~~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~-~~~~a~~~~~~li~~~~v~aiiG~~~s~~ 109 (550)
.+++|+||+++|+++. ....|+++|++++|+++ +|++++.|+++ |+..+.+.+|+++. ++|.+|+||.+|..
T Consensus 7 ~~~~ikIG~~~~~sg~---~~~~a~~lAv~~iN~~g---~l~~~~~D~~~~d~~~a~~~~~~l~~-~~V~aiiG~~~S~~ 79 (384)
T 3saj_A 7 MPNNIQIGGLFPNQQS---QEHAAFRFALSQLTEPP---KLLPQIDIVNISDSFEMTYRFCSQFS-KGVYAIFGFYERRT 79 (384)
T ss_dssp CCSEEEEEEEESCSSS---HHHHHHHHHHTTCCSSS---EEEEEEEECCTTCHHHHHHHHHHHHH-TTCSCEEECCCHHH
T ss_pred CCcceeEEEEecCCCH---HHHHHHHHHHHHHhcCC---ccceeeEecccCchhhHHHHHHHHHh-cCeEEEECCCCHHH
Confidence 3478999999999954 88899999999999984 99999999876 99999999999997 59999999999999
Q ss_pred HHHHHHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHHcCCeEEEEEEEcCCCCCcchhHHHH
Q 008863 110 TAVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALL 189 (550)
Q Consensus 110 ~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~~~w~~v~ii~~~~~~g~~~~~~~~l 189 (550)
+.+++++++.+++|+|++++ +..+ ..+|.|++.|+ ++.++++++++++|++|++|| +++|| ....+.+
T Consensus 80 ~~a~~~~~~~~~iP~is~~~----~~~~--~~~~~~~~~p~---~~~a~~~~~~~~g~~~v~ii~-d~~~g--~~~~~~~ 147 (384)
T 3saj_A 80 VNMLTSFCGALHVCFITPSF----PVDT--SNQFVLQLRPE---LQEALISIIDHYKWQTFVYIY-DADRG--LSVLQRV 147 (384)
T ss_dssp HHHHHHHHHHHTCCEEECSC----CCSS--CCTTEEECSCC---CHHHHHHHHHHTTCCEEEEEE-CSTTC--SHHHHHH
T ss_pred HHHHHHHhccCCCCeEeccc----cCcC--ccCceEEeccc---HHHHHHHHHHHCCCcEEEEEE-eCchh--HHHHHHH
Confidence 99999999999999999853 3333 44678888887 899999999999999999999 66899 9999999
Q ss_pred HHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcCCCeEEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEEecc
Q 008863 190 AEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGLVGKDSVWIVTNT 269 (550)
Q Consensus 190 ~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~~ii~~~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~ 269 (550)
.+.+++.| ++|.....++. ...|+..++.+|+++++|+|++ .+....+..++++++++||.++.|+||+++.
T Consensus 148 ~~~~~~~g-~~v~~~~~~~~------~~~d~~~~l~~ik~~~~~vii~-~~~~~~~~~~~~qa~~~g~~~~~~~~i~~~~ 219 (384)
T 3saj_A 148 LDTAAEKN-WQVTAVNILTT------TEEGYRMLFQDLEKKKERLVVV-DCESERLNAILGQIVKLEKNGIGYHYILANL 219 (384)
T ss_dssp HHHHHHHT-CEEEEEEGGGC------CHHHHHHTTTTCCSCSEEEEEE-ECCGGGHHHHHHHHHHTCCTTCEEEEEESSS
T ss_pred HHHhhhcC-ceEEEEEeccC------CchhHHHHHHHHhccCCcEEEE-EcCHHHHHHHHHHHHHcCCCCCCcEEEEECC
Confidence 99999999 99998774433 4578999999999999999999 9999999999999999999999999999886
Q ss_pred chhhcccCChhHHhhcCceEEEEeecCCCChhHHHHHHHHHHHhhccCCCCCCCCCCchhhHHhHHHHHHHHHHHhhcc-
Q 008863 270 VANALDSLNTTVISSMEGTLGIKSYYSDDSSPYKEFSALFRRNFTSEYPEEDHFHPSIHALRAHDSIKIITEAIGRLNY- 348 (550)
Q Consensus 270 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~yDav~~~a~Al~~~~~- 348 (550)
+....++ ........|++++..+.+ .+|..++|.++|+++|...++......++.+++++|||++++++|++++..
T Consensus 220 ~~~~~~~--~~~~~~~~~v~~~~~~~~-~~~~~~~F~~~~~~~~~~~~p~~~~~~~~~~aa~~YDav~~~a~Al~~~~~~ 296 (384)
T 3saj_A 220 GFMDIDL--NKFKESGANVTGFQLVNY-TDTIPARIMQQWRTSDSRDHTRVDWKRPKYTSALTYDGVKVMAEAFQSLRRQ 296 (384)
T ss_dssp CGGGSCH--HHHHHTTCCEEEEECCCT-TSHHHHHHHHHHHHHHHHC------CCCCHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CcccccH--HHhhCCCcceEEEEeecC-CChHHHHHHHHHHhcCccccCCCCCCccchhHHHHHHHHHHHHHHHHHHHhh
Confidence 4433221 122233456777776544 458999999999999876654332335677899999999999999998764
Q ss_pred -------------------CCCCHHHHHHHHHhCcccccceeEEEeCCCCCCCCceEEEEeeCCeeeEEEEEeCCCCCcc
Q 008863 349 -------------------NISSPEMLLRQMLSSDFSGLSGKIRFKDGELLNADTLRIVNVVGKKYKELDFWLPNFGFSK 409 (550)
Q Consensus 349 -------------------~~~~~~~l~~~l~~~~~~G~tG~i~f~~~g~~~~~~~~i~~~~~~~~~~vG~w~~~~g~~~ 409 (550)
.|.+|..|+++|++++|+|++|+++||++|++.+..|+|+++++.++++||.|++..|+..
T Consensus 297 ~~~~~~~~~~~~c~~~~~~~~~~g~~l~~~l~~~~f~G~tG~i~fd~~G~~~~~~~~i~~~~~~g~~~VG~W~~~~gl~~ 376 (384)
T 3saj_A 297 RIDISRRGNAGDCLANPAVPWGQGIDIQRALQQVRFEGLTGNVQFNEKGRRTNYTLHVIEMKHDGIRKIGYWNEDDKFVP 376 (384)
T ss_dssp TCCCCCCCSCCCSCCBSCCCCTTHHHHHHHHHSCCEEETTEEECBCTTSBBCSCCEEEEEEETTEEEEEEEEETTTEEEE
T ss_pred ccceecCCCCCCCCCCCCCCcCCcHHHHHHHHhCcCcccceeeEeCCCCCcccceEEEEEeccCCcceeEEEcCCCCccc
Confidence 1358999999999999999999999999999988999999999999999999999888654
No 8
>3h6g_A Glutamate receptor, ionotropic kainate 2; membrane protein glycoprotein, cell junction, cell membrane, glycoprotein, ION transport; HET: NAG TLA; 2.70A {Rattus norvegicus} PDB: 3h6h_A* 3qlv_C 3qlu_C* 3qlt_A* 3olz_A*
Probab=100.00 E-value=3.6e-46 Score=374.18 Aligned_cols=358 Identities=19% Similarity=0.282 Sum_probs=299.9
Q ss_pred CcEEEEEEEecC-CccchhHHHHHHHHHHHHhcCC---CCcEEEEEEecCC-CCHHHHHHHHHHhhhcCCeEEEEcCCCh
Q 008863 33 EVTKIGAIVDAN-SQMGKQAITAMKIAVQNFNSDS---RNHKLSLQIRDHN-RDPFQAATAAQELINKEKVKVIAGMETW 107 (550)
Q Consensus 33 ~~i~IG~i~~~~-~~~g~~~~~a~~~Av~~iN~~~---~~~~l~~~~~d~~-~~~~~a~~~~~~li~~~~v~aiiG~~~s 107 (550)
++|+||+++|++ +..|.....|+++|+++||+++ ++++|++++.|.. .|+..+...+|++++ ++|.+||||.+|
T Consensus 3 ~~i~IG~l~~~sg~~~g~~~~~a~~lAv~eiN~~ggil~~~~l~~~~~~~~~~d~~~~~~~a~~l~~-~~V~aiiG~~~S 81 (395)
T 3h6g_A 3 HVLRFGGIFEYVESGPMGAEELAFRFAVNTINRNRTLLPNTTLTYDTQKINLYDSFEASKKACDQLS-LGVAAIFGPSHS 81 (395)
T ss_dssp EEEEEEEEEEESSSCSCCHHHHHHHHHHHHHHHCSSSSSSEEEEEEEEEEETTCHHHHHHHHHHHHH-HCCSCEECCSSH
T ss_pred cceEEEEEecCCCcccchHHHHHHHHHHHHHhcCccccCCceEEEEEeecCCcChHHHHHHHHHhhh-cCcEEEECCCCh
Confidence 589999999997 3567889999999999999987 5789999998776 689999999999997 599999999999
Q ss_pred HHHHHHHHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHHcCCeEEEEEEEcCCCCCcchhHH
Q 008863 108 EETAVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLA 187 (550)
Q Consensus 108 ~~~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~~~w~~v~ii~~~~~~g~~~~~~~ 187 (550)
..+.+++++++.+++|+|+++++ ++.++. ..+|+||+.|++..++.++++++++++|++|++|+ +++|| ....+
T Consensus 82 ~~~~a~~~~~~~~~ip~is~~~~--~~~l~~-~~~~~~r~~~~~~~~~~~~~~~~~~~g~~~v~ii~-d~~~g--~~~~~ 155 (395)
T 3h6g_A 82 SSANAVQSICNALGVPHIQTRWK--HQVSDN-KDSFYVSLYPDFSSLSRAILDLVQFFKWKTVTVVY-DDSTG--LIRLQ 155 (395)
T ss_dssp HHHHHHHHHHHHTTCCEEECSCC--CCCTTC-CCCSEEEEEECHHHHHHHHHHHHHHTTCSEEEEEE-SSTHH--HHHTH
T ss_pred hHHHHHHHHHhcCCCCeEeeccC--cccccc-cCceEEEecCCHHHHHHHHHHHHHHCCCeEEEEEE-EChhH--HHHHH
Confidence 99999999999999999999988 666543 46789999999999999999999999999999998 56788 88899
Q ss_pred HHHHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcCCCeEEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEEe
Q 008863 188 LLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGLVGKDSVWIVT 267 (550)
Q Consensus 188 ~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~~ii~~~~~~~~~~~il~~a~~~g~~~~~~~~i~~ 267 (550)
.+++.+++.| +++.... ++. ...|+..++++|+++++++|++ .+....+..++++++++||.++.|+|+++
T Consensus 156 ~~~~~~~~~g-~~v~~~~-~~~------~~~d~~~~l~~i~~~~~~vi~~-~~~~~~~~~~~~qa~~~gl~~~~~~~i~~ 226 (395)
T 3h6g_A 156 ELIKAPSRYN-LRLKIRQ-LPA------DTKDAKPLLKEMKRGKEFHVIF-DCSHEMAAGILKQALAMGMMTEYYHYIFT 226 (395)
T ss_dssp HHHTGGGTSS-CEEEEEE-CCS------SGGGGHHHHHHHHHTTCCEEEE-ESCHHHHHHHHHHHHHTTCCSTTCEEEEC
T ss_pred HHHHhhhcCC-ceEEEEE-eCC------CchhHHHHHHHHhhcCCeEEEE-ECCHHHHHHHHHHHHHccccCCceEEEEe
Confidence 9999999999 9998765 654 3478999999999999999999 99999999999999999999999999988
Q ss_pred ccchhhcccCChhHHhhcCc--eEEEEeecCCCChhHHHHHHHHHHHhhccCCCCC----CCCCCchhhHHhHHHHHHHH
Q 008863 268 NTVANALDSLNTTVISSMEG--TLGIKSYYSDDSSPYKEFSALFRRNFTSEYPEED----HFHPSIHALRAHDSIKIITE 341 (550)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~g--~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~----~~~~~~~~~~~yDav~~~a~ 341 (550)
+......+.... ...| +.++..+ ...++..++|.++|++++....+... ...++.+++++|||++++++
T Consensus 227 ~~~~~~~~~~~~----~~~g~~~~~~~~~-~~~~~~~~~f~~~~~~~~~~~~p~~~~~~~~~~~~~~aa~~YDav~~~a~ 301 (395)
T 3h6g_A 227 TLDLFALDVEPY----RYSGVNMTGFRIL-NTENTQVSSIIEKWSMERLQAPPKPDSGLLDGFMTTDAALMYDAVHVVSV 301 (395)
T ss_dssp CTTGGGBCCTTT----TTSCCEEEEEECS-CTTSHHHHHHHHHHHHC------CCSSCBCTTCCCHHHHHHHHHHHHHHH
T ss_pred cCceeEechHHh----ccCccceEEEEEe-cCCcHHHHHHHHHHHhcccccCcccCCCcCCCccchhHHHHHhHHHHHHH
Confidence 653322222111 1233 3555544 33458899999999886643332110 11256789999999999999
Q ss_pred HHHhhcc------------CCCCHHHHHHHHHhCcccccceeEEEeC-CCCCCCCceEEEEeeCCeeeEEEEEeCCCCCc
Q 008863 342 AIGRLNY------------NISSPEMLLRQMLSSDFSGLSGKIRFKD-GELLNADTLRIVNVVGKKYKELDFWLPNFGFS 408 (550)
Q Consensus 342 Al~~~~~------------~~~~~~~l~~~l~~~~~~G~tG~i~f~~-~g~~~~~~~~i~~~~~~~~~~vG~w~~~~g~~ 408 (550)
|+++++. .|.++..|+++|++++|+|++|+++||+ +|++.+..|.|++++++++++||.|++..|+.
T Consensus 302 Al~~a~~~~~~~~~c~~~~~~~~~~~l~~al~~~~~~G~tG~i~fd~~~G~~~~~~~~i~~~~~~~~~~vG~w~~~~g~~ 381 (395)
T 3h6g_A 302 AVQQFPQMTVSSLQCNRHKPWRFGTRFMSLIKEAHWEGLTGRITFNKTNGLRTDFDLDVISLKEEGLEKIGTWDPASGLN 381 (395)
T ss_dssp HHHTCTTCCCCCCCTTSCCCCTTHHHHHHHHHHCEEEETTEEEECCTTTSEECCCCEEEEEEETTEEEEEEEEETTTEEC
T ss_pred HHHhhhcCCCcCCCCCCCCcCcccHHHHHHHhcCCCcCcceeeEecCCCCeecCCeEEEEEeccCCceEEEEEcCCCCcc
Confidence 9999865 1458999999999999999999999998 99999889999999999999999999998876
Q ss_pred ccc
Q 008863 409 KTS 411 (550)
Q Consensus 409 ~~~ 411 (550)
...
T Consensus 382 ~~~ 384 (395)
T 3h6g_A 382 MTE 384 (395)
T ss_dssp CCC
T ss_pred ccC
Confidence 543
No 9
>1jdp_A NPR-C, atrial natriuretic peptide clearance receptor; hormone-receptor complex, natriuretic peptide receptor, ALLO activation, signaling protein; HET: NDG NAG; 2.00A {Homo sapiens} SCOP: c.93.1.1 PDB: 1jdn_A* 1yk0_A* 1yk1_A*
Probab=100.00 E-value=1.1e-45 Score=376.03 Aligned_cols=358 Identities=15% Similarity=0.180 Sum_probs=291.1
Q ss_pred CCCcEEEEEEEecCC---ccchhHHHHHHHHHHHHhcCC-------CCcEEEEEEecCCCCHHHHHHHHHHhhh---cCC
Q 008863 31 IEEVTKIGAIVDANS---QMGKQAITAMKIAVQNFNSDS-------RNHKLSLQIRDHNRDPFQAATAAQELIN---KEK 97 (550)
Q Consensus 31 ~~~~i~IG~i~~~~~---~~g~~~~~a~~~Av~~iN~~~-------~~~~l~~~~~d~~~~~~~a~~~~~~li~---~~~ 97 (550)
.+++|+||+++|+++ ..|.....|+++|+++||+++ +|++|+++++|+++++. ++..+.+++. +++
T Consensus 6 ~~~~i~IG~~~p~sg~~~~~g~~~~~a~~~Av~eiN~~~~~~~~ll~g~~l~~~~~D~~~~~~-a~~~~~~~~~~~~~~~ 84 (441)
T 1jdp_A 6 PPQKIEVLVLLPQDDSYLFSLTRVRPAIEYALRSVEGNGTGRRLLPPGTRFQVAYEDSDCGNR-ALFSLVDRVAAARGAK 84 (441)
T ss_dssp CCCEEEEEEEECSSTTSTTCHHHHHHHHHHHHHHHCC-----CCSCTTCEEEEEEEECTTSTH-HHHHHHHHHHHTTTCC
T ss_pred CCCceEEEEEcCCCCCcccchhhhHHHHHHHHHHHHhCCCcccccCCCcEEEEEEecCCCchh-HHHHHHHHHHhhccCC
Confidence 346899999999983 345678899999999999875 47999999999999997 7665555442 249
Q ss_pred eEEEEcCCChHHHHHHHHhhccCCccEEeccCCCCCCcc-cCC-CCCeEEEEecCcHHhHHHHHHHHHHcCCeEEEEEEE
Q 008863 98 VKVIAGMETWEETAVVAEIASRVQVPILSFAAPAVTPLS-MSR-RWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYE 175 (550)
Q Consensus 98 v~aiiG~~~s~~~~~v~~~~~~~~iP~is~~~~~~~~~~-~~~-~~~~~~~~~p~~~~~~~al~~~l~~~~w~~v~ii~~ 175 (550)
|.+||||.+|..+.+++++++.+++|+|+++++ ++.+ ++. .+||+||+.|++..++.++++++++|+|++|++|++
T Consensus 85 v~aiiG~~~S~~~~~v~~~~~~~~ip~is~~~~--~~~ls~~~~~~~~~fr~~p~~~~~~~a~~~~~~~~~w~~v~ii~~ 162 (441)
T 1jdp_A 85 PDLILGPVCEYAAAPVARLASHWDLPMLSAGAL--AAGFQHKDSEYSHLTRVAPAYAKMGEMMLALFRHHHWSRAALVYS 162 (441)
T ss_dssp CSEEECCCSHHHHHHHHHHHHHHTCCEEESCCC--SGGGGCTTTTTTTEEECSCCHHHHHHHHHHHHHHHTCCEEEEEEE
T ss_pred ceEEECCCchhhHHHHHHHHhhcCCcEEcCCCC--chhhccccccCCceEEecCcHHHHHHHHHHHHHhcCCcEEEEEEE
Confidence 999999999999999999999999999999998 7775 444 799999999999999999999999999999999999
Q ss_pred cCCCCCcch---hHHHHHHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcCCCeEEEEEcCCHHHHHHHHHHH
Q 008863 176 DNVYGGDSG---KLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEA 252 (550)
Q Consensus 176 ~~~~g~~~~---~~~~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~~ii~~~~~~~~~~~il~~a 252 (550)
|++|| +. ..+.+++.+++.| +||.....++.. ..++...+++|+ +++|+|++ ++....+..+++++
T Consensus 163 d~~~g--~~~~~~~~~~~~~~~~~g-~~v~~~~~~~~~------~~d~~~~l~~i~-~~~~vii~-~~~~~~~~~~~~~~ 231 (441)
T 1jdp_A 163 DDKLE--RNCYFTLEGVHEVFQEEG-LHTSIYSFDETK------DLDLEDIVRNIQ-ASERVVIM-CASSDTIRSIMLVA 231 (441)
T ss_dssp CCSSS--CHHHHHHHHHHHHHHHHT-CEEEEEEECTTS------CCCHHHHHHHHH-HHCSEEEE-ESCHHHHHHHHHHH
T ss_pred cCCcc--cchHHHHHHHHHHHHhcC-cEEEEEEecCCc------ccCHHHHHHHhh-cCCcEEEE-ecCHHHHHHHHHHH
Confidence 99999 98 8999999999999 999887765432 246889999999 89999999 99999999999999
Q ss_pred HHcCCCCCCEEEEEec----------cchhhcccCChhHHhhcCceEEEEeecCCCChhHHHHHHHHHHHhhccCCCCCC
Q 008863 253 NRMGLVGKDSVWIVTN----------TVANALDSLNTTVISSMEGTLGIKSYYSDDSSPYKEFSALFRRNFTSEYPEEDH 322 (550)
Q Consensus 253 ~~~g~~~~~~~~i~~~----------~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 322 (550)
+++|+.++.|+||.++ .|... ............+..++..+.. ..|.+++|.++|++++....+.. .
T Consensus 232 ~~~gl~~~~~v~i~~~~~~~~~~~~~~w~~~-~~~~~~~~~~~~~~~g~~~~~~-~~p~~~~F~~~~~~~~~~~~~~~-~ 308 (441)
T 1jdp_A 232 HRHGMTSGDYAFFNIELFNSSSYGDGSWKRG-DKHDFEAKQAYSSLQTVTLLRT-VKPEFEKFSMEVKSSVEKQGLNM-E 308 (441)
T ss_dssp HHTTCTTTTCEEEEECSSCCCSTTTCTTCCS-STTHHHHHHHGGGEEEEEECCC-CCHHHHHHHHHHHHHHHTTTCCC-C
T ss_pred HHcCCCCCCEEEEEEeccccccccCCCCccC-CcccHHHHHHHHhheEEeecCC-CCchHHHHHHHHHHHHhhCCCCc-c
Confidence 9999998889999887 33221 1111111133455556655433 34899999999988753221111 1
Q ss_pred CCCCchhhHHhHHHHHHHHHHHhhc---cCCCCHHHHHHHHHhCcccccceeEEEeCCCCCCCCceEEEEee---CCeee
Q 008863 323 FHPSIHALRAHDSIKIITEAIGRLN---YNISSPEMLLRQMLSSDFSGLSGKIRFKDGELLNADTLRIVNVV---GKKYK 396 (550)
Q Consensus 323 ~~~~~~~~~~yDav~~~a~Al~~~~---~~~~~~~~l~~~l~~~~~~G~tG~i~f~~~g~~~~~~~~i~~~~---~~~~~ 396 (550)
..+..+++++||||+++++||+++. .++.++++|+++|++++|.|++|+++||++|++. ..|+|++++ ++.++
T Consensus 309 ~~~~~~~~~~YdAv~~~A~Al~~~~~~~~~~~~~~~l~~~l~~~~f~g~~G~v~fd~~Gd~~-~~~~I~~~~~~~~g~~~ 387 (441)
T 1jdp_A 309 DYVNMFVEGFHDAILLYVLALHEVLRAGYSKKDGGKIIQQTWNRTFEGIAGQVSIDANGDRY-GDFSVIAMTDVEAGTQE 387 (441)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHHHHHHTTCCTTCHHHHHHHHSSEEEEETTEEEEECTTSBBC-CEEEEEEEEETTTTEEE
T ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhCCeeECCccceEECCCCCcc-ccEEEEecccCCCCceE
Confidence 1345678899999999999999984 3235899999999999999999999999999986 899999986 46799
Q ss_pred EEEEEeCCCC
Q 008863 397 ELDFWLPNFG 406 (550)
Q Consensus 397 ~vG~w~~~~g 406 (550)
+||.|++..+
T Consensus 388 ~VG~~~~~~~ 397 (441)
T 1jdp_A 388 VIGDYFGKEG 397 (441)
T ss_dssp EEEEEETTTT
T ss_pred EEEEEcCCCC
Confidence 9999998654
No 10
>2e4u_A Metabotropic glutamate receptor 3; G-protein-coupled receptor, neuron, central nerve system, SI protein; HET: NAG GLU; 2.35A {Rattus norvegicus} PDB: 2e4v_A* 2e4w_A* 2e4x_A* 2e4y_A*
Probab=100.00 E-value=2.4e-45 Score=383.18 Aligned_cols=379 Identities=16% Similarity=0.248 Sum_probs=308.4
Q ss_pred CCcEEEEEEEecCC-------------ccchhHHHHHHHHHHHHhcCC---CCcEEEEEEecCCCCHHHHHHHHHHhhh-
Q 008863 32 EEVTKIGAIVDANS-------------QMGKQAITAMKIAVQNFNSDS---RNHKLSLQIRDHNRDPFQAATAAQELIN- 94 (550)
Q Consensus 32 ~~~i~IG~i~~~~~-------------~~g~~~~~a~~~Av~~iN~~~---~~~~l~~~~~d~~~~~~~a~~~~~~li~- 94 (550)
+++|+||+++|+++ ..|.+...|+++|+++||+++ ||++|+++++|+++++..|++.+.++++
T Consensus 12 ~g~i~IG~l~pl~g~~~~~~~C~~~~~~~g~~~~~a~~~AieeIN~~~~llpg~~L~~~i~D~~~~~~~a~~~a~~~l~~ 91 (555)
T 2e4u_A 12 EGDLVLGGLFPINEKGTGTEECGRINEDRGIQRLEAMLFAIDEINKDNYLLPGVKLGVHILDTCSRDTYALEQSLEFVRA 91 (555)
T ss_dssp CCSEEEEEEECCEEECCTTCSEEEECTTTTHHHHHHHHHHHHHHHHCTTSSTTCCEEEEEEECTTCHHHHHHHHHHHHHT
T ss_pred CCCEEEEEEEEeeECCCCCCccccccchhhhHHHHHHHHHHHHHhCCCCCCCCCeEEEEEEECCCChHHHHHHHHHHHhC
Confidence 46899999999973 357788899999999999987 6999999999999999999999988874
Q ss_pred -----------------------cCCeEEEEcCCChHHHHHHHHhhccCCccEEeccCCCCCCcc-cCCCCCeEEEEecC
Q 008863 95 -----------------------KEKVKVIAGMETWEETAVVAEIASRVQVPILSFAAPAVTPLS-MSRRWPYLIRMASN 150 (550)
Q Consensus 95 -----------------------~~~v~aiiG~~~s~~~~~v~~~~~~~~iP~is~~~~~~~~~~-~~~~~~~~~~~~p~ 150 (550)
+++|.+||||.+|..+.+++.+++.+++|+|+++++ ++.+ ++..|||+||+.|+
T Consensus 92 ~~~~~~~~ny~C~~~~~~~~~~~~~~v~aviG~~~S~~s~~va~~~~~~~iP~Is~~a~--~~~lsd~~~~p~~fr~~p~ 169 (555)
T 2e4u_A 92 SLTKVDEAEYMCPDGSYAIQENIPLLIAGVIGGSYSSVSIQVANLLRLFQIPQISYAST--SAKLSDKSRYDYFARTVPP 169 (555)
T ss_dssp TC--------------------CCCCEEEEEECSSHHHHHHHHHHHGGGTCCEEESSCC--CGGGGCTTTCTTEEESSCC
T ss_pred cCcccCCCCcccCCCccccccccCCceEEEECCCCcHHHHHHHHHHhCcCCceEeCCcC--CCccCCcccCCCceeeCCC
Confidence 578999999999999999999999999999999998 7774 56689999999999
Q ss_pred cHHhHHHHHHHHHHcCCeEEEEEEEcCCCCCcchhHHHHHHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhc-
Q 008863 151 DSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQD- 229 (550)
Q Consensus 151 ~~~~~~al~~~l~~~~w~~v~ii~~~~~~g~~~~~~~~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~- 229 (550)
+..++.++++++++|+|+||++|++|++|| ....+.|++.+++.| ++|++...++... ...++..+++++++
T Consensus 170 d~~~~~a~~~ll~~fgw~~V~ii~~d~~~g--~~~~~~~~~~~~~~g-i~v~~~~~~~~~~----~~~~~~~~l~~i~~~ 242 (555)
T 2e4u_A 170 DFYQAKAMAEILRFFNWTYVSTVASEGDYG--ETGIEAFEQEARLRN-ICIATAEKVGRSN----IRKSYDSVIRELLQK 242 (555)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEEEESSTTH--HHHHHHHHHHHHTTT-CEEEEEEEECTTC----CHHHHHHHHHHHHTC
T ss_pred hHHHHHHHHHHHHHcCCeEEEEEEeeChHH--HHHHHHHHHHHHHCC-ccEEEEEEeCCCC----ChHHHHHHHHHHhcc
Confidence 999999999999999999999999999999 999999999999999 9999988887532 45789999999964
Q ss_pred CCCeEEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEEeccchhhcccCChhHHhhcCceEEEEeecCCCChhHHHHHHH-
Q 008863 230 KQSRVFIVLQASLDMTIHLFTEANRMGLVGKDSVWIVTNTVANALDSLNTTVISSMEGTLGIKSYYSDDSSPYKEFSAL- 308 (550)
Q Consensus 230 ~~~~~ii~~~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~f~~~- 308 (550)
+++++||+ .+....+..+++++.++|+ +++||.++.|........ .....++|++++..+.... |.+++|+..
T Consensus 243 s~a~vIi~-~~~~~~~~~~~~~~~~~g~---~~~~i~s~~~~~~~~~~~-~~~~~~~G~l~~~~~~~~i-pgf~~f~~~~ 316 (555)
T 2e4u_A 243 PNARVVVL-FMRSDDSRELIAAANRVNA---SFTWVASDGWGAQESIVK-GSEHVAYGAITLELASHPV-RQFDRYFQSL 316 (555)
T ss_dssp TTCCEEEE-ECCHHHHHHHHHHHHHTTC---CCEEEECTTTTTCGGGTT-TCHHHHTTCEEEEECCCCC-HHHHHHHHTC
T ss_pred CCCCEEEE-EcCHHHHHHHHHHHHHhcC---CeEEEEeccccccchhhc-cchhhcceEEEEEeccCCC-CcHHHHHhhC
Confidence 79999999 9999999999999999998 479999998875422211 1235678999988764443 666665542
Q ss_pred --------------HHHHhhccCC-------CCCCC--------CCCchhhHHhHHHHHHHHHHHhhccC----------
Q 008863 309 --------------FRRNFTSEYP-------EEDHF--------HPSIHALRAHDSIKIITEAIGRLNYN---------- 349 (550)
Q Consensus 309 --------------~~~~~~~~~~-------~~~~~--------~~~~~~~~~yDav~~~a~Al~~~~~~---------- 349 (550)
|...|..... .|.+. .+..+++.+||||+++++||+++..+
T Consensus 317 ~p~~~p~~~~~~~~w~~~f~c~~~~~~~~~~~C~~~e~l~~~~~~~~~~~~~~YdAVya~A~AL~~~~~~~~~~~~~~~~ 396 (555)
T 2e4u_A 317 NPYNNHRNPWFRDFWEQKFQCSLQNKRNHRQVCDKHLAIDSSNYEQESKIMFVVNAVYAMAHALHKMQRTLCPQTTKLCD 396 (555)
T ss_dssp CTTTCTTCTTHHHHHHHHTTCCCC------CCCCTTCCCCTTTCCCCTTHHHHHHHHHHHHHHHHHHHHHHCTTCSSCCG
T ss_pred CcccCCCCHHHHHHHHHHcCCCCCCCCccCCCCCCccccccccccccccchhhHHHHHHHHHHHHHHHhhhcCCCCcccc
Confidence 3333322111 12111 14457888999999999999998541
Q ss_pred ---CCCHHHHHH-HHHhCccc------cccee-EEEeCCCCCCCCceEEEEee--CC--eeeEEEEEeCCCCCccccCCC
Q 008863 350 ---ISSPEMLLR-QMLSSDFS------GLSGK-IRFKDGELLNADTLRIVNVV--GK--KYKELDFWLPNFGFSKTSSKH 414 (550)
Q Consensus 350 ---~~~~~~l~~-~l~~~~~~------G~tG~-i~f~~~g~~~~~~~~i~~~~--~~--~~~~vG~w~~~~g~~~~~~~~ 414 (550)
..++++|++ +|++++|. |.+|. +.||++|++. ..|+|++++ ++ .+++||.|++ .+..
T Consensus 397 ~~~~~~~~~l~~~~L~~v~f~~~~~~~g~~G~~v~fd~~Gd~~-~~y~I~~~~~~~g~~~~~~VG~~~~--~l~i----- 468 (555)
T 2e4u_A 397 AMKILDGKKLYKEYLLKIQFTAPFNPNKGADSIVKFDTFGDGM-GRYNVFNLQQTGGKYSYLKVGHWAE--TLSL----- 468 (555)
T ss_dssp GGTSCCHHHHHHHHTTCEEECCSSSCCSSSCCEEECCTTSCCC-CCEEEEEEECTTSSCEEEEEEEESS--SEEC-----
T ss_pred ccCCCCcccccHHhHhceeecccccccCCCCCeEEEcCCCCcc-ceEEEEEEEecCCcEEEEEEEEecc--eEEE-----
Confidence 147889999 99999999 99996 9999999985 899999995 33 5899999984 2211
Q ss_pred CcCCcCCCccccCCCCccccCCCCCCCCCCccccC
Q 008863 415 NVGDISSNIAAEGFTGPVIWPGNLINRNPKGWAMP 449 (550)
Q Consensus 415 ~~~~~~~~~~~~~~~~~i~wp~~~~~~~p~~~~~~ 449 (550)
.+..|.|++ . +.|++.+-.
T Consensus 469 -------------~~~~I~W~~--~-~~P~S~CS~ 487 (555)
T 2e4u_A 469 -------------DVDSIHWSR--N-SVPTSQCSD 487 (555)
T ss_dssp -------------CGGGCCCTT--S-SCCCCCSSC
T ss_pred -------------eccccccCC--C-CCcceeeCC
Confidence 123499987 4 788876543
No 11
>3sm9_A Mglur3, metabotropic glutamate receptor 3; structural genomics, structural genomics consortium, SGC, CE membrane, G-protein coupled receptor; HET: Z99; 2.26A {Homo sapiens}
Probab=100.00 E-value=9.5e-46 Score=377.90 Aligned_cols=356 Identities=16% Similarity=0.235 Sum_probs=297.2
Q ss_pred CCCcEEEEEEEecC------------Cc-cchhHHHHHHHHHHHHhcCC---CCcEEEEEEecCCCCHHHHHHHHHHhhh
Q 008863 31 IEEVTKIGAIVDAN------------SQ-MGKQAITAMKIAVQNFNSDS---RNHKLSLQIRDHNRDPFQAATAAQELIN 94 (550)
Q Consensus 31 ~~~~i~IG~i~~~~------------~~-~g~~~~~a~~~Av~~iN~~~---~~~~l~~~~~d~~~~~~~a~~~~~~li~ 94 (550)
.+++|.||++||.+ .. .|.+...|+++|+++||+++ ||++|+++++|+++++..|++.+.++++
T Consensus 10 ~~GDi~iGglf~l~~~~~~~~~C~~~~~~~g~~~~~a~~~AieeIN~~~~lLpg~~L~~~i~D~~~~~~~a~~~~~~ll~ 89 (479)
T 3sm9_A 10 IEGDLVLGGLFPINEKGTGTEECGRINEDRGIQRLEAMLFAIDEINKDDYLLPGVKLGVHILDTCSRDTYALEQSLEFVR 89 (479)
T ss_dssp ECCSEEEEEEECCEEECC-CCSEEEECTTTTHHHHHHHHHHHHHHHHCSSSSTTCCEEEEEEECTTCHHHHHHHHHHHHH
T ss_pred cCCCEEEEEEEEeEECCCCCCCCcccchhhhHHHHHHHHHHHHHHhCCCccCCCCeEeEEEEecCCChHHHHHHHHHHHh
Confidence 34789999999985 12 67889999999999999998 7999999999999999999999999997
Q ss_pred c------------------------CCeEEEEcCCChHHHHHHHHhhccCCccEEeccCCCCCCcc-cCCCCCeEEEEec
Q 008863 95 K------------------------EKVKVIAGMETWEETAVVAEIASRVQVPILSFAAPAVTPLS-MSRRWPYLIRMAS 149 (550)
Q Consensus 95 ~------------------------~~v~aiiG~~~s~~~~~v~~~~~~~~iP~is~~~~~~~~~~-~~~~~~~~~~~~p 149 (550)
. ++|.+||||.+|..+.+++++++.+++|+|+++++ ++.+ ++.++||+||+.|
T Consensus 90 ~~~~~~~~pny~C~~~~~~~~~~~~~~v~aviG~~~S~~s~ava~i~~~~~iP~Is~~a~--~~~lsd~~~~p~~fr~~p 167 (479)
T 3sm9_A 90 ASLTKVDEAEYMCPDGSYAIQENIPLLIAGVIGGSYSSVSIQVANLLRLFQIPQISYAST--SAKLSDKSRYDYFARTVP 167 (479)
T ss_dssp TCC-----------------------CEEEEECCSSHHHHHHHHHHHGGGTCCEEESSCC--CGGGGCTTTTTTEEESSC
T ss_pred CCCccCCCCCCccCCCCccccccCCCceEEEECCCCcHHHHHHHHHHhcCCccEECCCcC--CccccCcccCCCeEEeCC
Confidence 5 47999999999999999999999999999999998 7774 5667999999999
Q ss_pred CcHHhHHHHHHHHHHcCCeEEEEEEEcCCCCCcchhHHHHHHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHH-HHhh
Q 008863 150 NDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGEL-KKVQ 228 (550)
Q Consensus 150 ~~~~~~~al~~~l~~~~w~~v~ii~~~~~~g~~~~~~~~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l-~~i~ 228 (550)
++..++.++++++++|||+||++|++|++|| ....+.+++.+++.| +||.+.+.++... ...++...+ +.++
T Consensus 168 sd~~~~~a~~~ll~~fgw~~V~ii~~dd~~G--~~~~~~~~~~~~~~G-i~v~~~~~i~~~~----~~~d~~~~l~~~i~ 240 (479)
T 3sm9_A 168 PDFYQAKAMAEILRFFNWTYVSTVASEGDYG--ETGIEAFEQEARLRN-ISIATAEKVGRSN----IRKSYDSVIRELLQ 240 (479)
T ss_dssp CTHHHHHHHHHHHHHTTCCEEEEEEESSHHH--HHHHHHHHHHHHTTT-CEEEEEEEECC------CHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHCCCeEEEEEEecchhh--HHHHHHHHHHHHHCC-ceEEEEEEcCCCC----ChHHHHHHHHHHHh
Confidence 9999999999999999999999999999999 999999999999999 9999988887543 457888888 6788
Q ss_pred cCCCeEEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEEeccchhhcccCChhHHhhcCceEEEEeecCCCChhHHHHHHH
Q 008863 229 DKQSRVFIVLQASLDMTIHLFTEANRMGLVGKDSVWIVTNTVANALDSLNTTVISSMEGTLGIKSYYSDDSSPYKEFSAL 308 (550)
Q Consensus 229 ~~~~~~ii~~~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~f~~~ 308 (550)
++++++||+ ++....+..+++++.++|+. ++||.++.|........ .....++|++++..+.... |++++|+..
T Consensus 241 ~s~a~vIi~-~~~~~~~~~l~~~~~~~g~~---~~wI~s~~w~~~~~~~~-~~~~~~~G~l~~~~~~~~i-pgf~~fl~~ 314 (479)
T 3sm9_A 241 KPNARVVVL-FMRSDDSRELIAAASRANAS---FTWVASDGWGAQESIIK-GSEHVAYGAITLELASQPV-RQFDRYFQS 314 (479)
T ss_dssp CTTCCEEEE-ECCHHHHHHHHHHHHHTTCC---CEEEECTTTTTCHHHHT-TCTTTTTTCEEEEECCCCC-HHHHHHHHT
T ss_pred cCCCeEEEE-EcChHHHHHHHHHHHHhCCE---EEEEEechhhcCccccc-cccccCceEEEEEeccCCC-cchhhHhhc
Confidence 899999999 99999999999999999997 59999999875321111 1125678999999876665 889988765
Q ss_pred H----------HHHhhccCCCCC---------CCC-----------CCchhhHHhHHHHHHHHHHHhhcc--C-------
Q 008863 309 F----------RRNFTSEYPEED---------HFH-----------PSIHALRAHDSIKIITEAIGRLNY--N------- 349 (550)
Q Consensus 309 ~----------~~~~~~~~~~~~---------~~~-----------~~~~~~~~yDav~~~a~Al~~~~~--~------- 349 (550)
+ .+.+|...+.|. .|. .......+||||+++|+||+++.. +
T Consensus 315 ~~p~~~p~d~~~~~~w~~~f~C~~~~~~~~~~~C~~~~~l~~~~~~~~~~~~~vy~AVyavA~ALh~m~~~~~~~~~~~c 394 (479)
T 3sm9_A 315 LNPYNNHRNPWFRDFWEQKFQCSLQNKRNHRRVCDKHLAIDSSNYEQESKIMFVVNAVYAMAHALHKMQRTLCPNTTKLC 394 (479)
T ss_dssp CCTTTCTTCTTHHHHHHHHHTCBCCC---CSCBCCTTCCCCTTTCCCCTTHHHHHHHHHHHHHHHHHHHHHHSTTCSSCC
T ss_pred cCcCcCCCCHHHHHHHHHHcCCCCCCCcccccCCCCccccccCccccccchhhHHHHHHHHHHHHHHHHHhhcCCCCcCC
Confidence 2 333444333321 111 112346799999999999999853 1
Q ss_pred ----CCCHHHHH-HHHHhCccccc------ce-eEEEeCCCCCCCCceEEEEeeC----CeeeEEEEEe
Q 008863 350 ----ISSPEMLL-RQMLSSDFSGL------SG-KIRFKDGELLNADTLRIVNVVG----KKYKELDFWL 402 (550)
Q Consensus 350 ----~~~~~~l~-~~l~~~~~~G~------tG-~i~f~~~g~~~~~~~~i~~~~~----~~~~~vG~w~ 402 (550)
..++++|+ ++|++++|.+. +| .+.||++|+.. ..|+|++++. ..+++||.|+
T Consensus 395 ~~~~~~~~~qL~~~~Lk~v~F~~~~~~~~~~g~~v~fd~~G~~~-~~YdI~n~~~~~~~~~~~~VG~~~ 462 (479)
T 3sm9_A 395 DAMKILDGKKLYKDYLLKINFTAPFNPNKDADSIVKFDTFGDGM-GRYNVFNFQNVGGKYSYLKVGHWA 462 (479)
T ss_dssp HHHHSCCHHHHHHHTGGGCCEECTTC-----CCEECCCTTCBCC-CCEEEEEEEESSSCEEEEEEEEES
T ss_pred CCCCCcChHHHHHHHhcceeeccccCccccCCCeEEECCCCCcc-cceEEEEEEECCCcEEEEEEEEEe
Confidence 24788999 99999999988 55 89999999985 8999999973 3578999997
No 12
>1dp4_A Atrial natriuretic peptide receptor A; periplasmic binding protein fold, dimer, hormone/growth FACT receptor, lyase complex; HET: NAG; 2.00A {Rattus norvegicus} SCOP: c.93.1.1 PDB: 1t34_A* 3a3k_A*
Probab=100.00 E-value=1.9e-45 Score=374.06 Aligned_cols=357 Identities=14% Similarity=0.173 Sum_probs=293.7
Q ss_pred CcEEEEEEEecC---CccchhHHH-HHHHHHHHHhcCC---CCcEEEEEEecC-----CCCHHHHHHHHHHhhhcCCeEE
Q 008863 33 EVTKIGAIVDAN---SQMGKQAIT-AMKIAVQNFNSDS---RNHKLSLQIRDH-----NRDPFQAATAAQELINKEKVKV 100 (550)
Q Consensus 33 ~~i~IG~i~~~~---~~~g~~~~~-a~~~Av~~iN~~~---~~~~l~~~~~d~-----~~~~~~a~~~~~~li~~~~v~a 100 (550)
++|+||+++|++ +..|..... |+++|+++||+++ +|++|+++++|+ +|++..++..+++++.+++|.+
T Consensus 1 g~i~IG~l~p~sg~~~~~g~~~~~~a~~~Av~~iN~~ggil~g~~l~~~~~D~~~~p~~c~~~~a~~~a~~~l~~~~v~a 80 (435)
T 1dp4_A 1 SDLTVAVVLPLTNTSYPWSWARVGPAVELALARVKARPDLLPGWTVRMVLGSSENAAGVCSDTAAPLAAVDLKWEHSPAV 80 (435)
T ss_dssp CEEEEEEEECSSCCCSTTCHHHHHHHHHHHHHHHHTCTTSSTTCEEEEEEEECBCTTSSBCTTHHHHHHHHHHHHHCCSE
T ss_pred CceEEEEEccCcCCCCceeHHHHHHHHHHHHHHHHhCCCCCCCceEEEEEecCcCcccccchhhHHHHHHHHHHhcCceE
Confidence 379999999998 356777777 9999999999997 589999999999 4556688888888887789999
Q ss_pred EEcCCChHHHHHHHHhhccCCccEEeccCCCCCCcc-cCCCCCeEEEEecCcHHhHHHHHHHHHHcCCeEEEEE------
Q 008863 101 IAGMETWEETAVVAEIASRVQVPILSFAAPAVTPLS-MSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAI------ 173 (550)
Q Consensus 101 iiG~~~s~~~~~v~~~~~~~~iP~is~~~~~~~~~~-~~~~~~~~~~~~p~~~~~~~al~~~l~~~~w~~v~ii------ 173 (550)
||||.+|..+.+++++++.+++|+|+++++ ++.+ ++..+||+||+.|++..++.++++++++|+|++|++|
T Consensus 81 viG~~~S~~~~av~~~~~~~~ip~is~~~~--~~~ls~~~~~~~~fr~~p~~~~~~~a~~~~l~~~~w~~v~ii~~~d~~ 158 (435)
T 1dp4_A 81 FLGPGCVYSAAPVGRFTAHWRVPLLTAGAP--ALGIGVKDEYALTTRTGPSHVKLGDFVTALHRRLGWEHQALVLYADRL 158 (435)
T ss_dssp EECCCSHHHHHHHHHHHHHHTCCEEESCCC--CGGGGCTTTSTTEEECSCCHHHHHHHHHHHHHHHTCCSEEEEEEECCS
T ss_pred EECCCChHHHHHHHHHHHhcCCcEEccccc--ccccCcccccCeEEEecCcHHHHHHHHHHHHHHCCCcEEEEEEEccCC
Confidence 999999999999999999999999999998 6764 4456999999999999999999999999999999999
Q ss_pred EEcCCCCCcchhHHHHHHHHhc-CCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcCCCeEEEEEcCCHHHHHHHHHHH
Q 008863 174 YEDNVYGGDSGKLALLAEALQN-VSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEA 252 (550)
Q Consensus 174 ~~~~~~g~~~~~~~~l~~~l~~-~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~~ii~~~~~~~~~~~il~~a 252 (550)
+++++|| .. .+.+.+.+.+ .| ++|.....++. ...|+..++++|++ ++|+|++ ++....+..+++++
T Consensus 159 ~~~~~~g--~~-~~~~~~~~~~~~g-~~v~~~~~~~~------~~~d~~~~l~~i~~-~~~viv~-~~~~~~~~~~~~~a 226 (435)
T 1dp4_A 159 GDDRPCF--FI-VEGLYMRVRERLN-ITVNHQEFVEG------DPDHYPKLLRAVRR-KGRVIYI-CSSPDAFRNLMLLA 226 (435)
T ss_dssp SSCCHHH--HH-HHHHHHHHHHHHC-CEEEEEEECTT------CGGGHHHHHHHHHH-HCSEEEE-ESCHHHHHHHHHHH
T ss_pred CCcchHH--HH-HHHHHHHHHhhcC-eEEEEEEEecC------chhhHHHHHHHHHh-hCceEEE-ecChHHHHHHHHHH
Confidence 5555565 44 3556677777 89 99988776533 34689999999999 9999999 99999999999999
Q ss_pred HHcCCCCCCEEEEEeccchhhcc---------------cCChhHHhhcCceEEEEeecCCCChhHHHHHHHHHHHhhccC
Q 008863 253 NRMGLVGKDSVWIVTNTVANALD---------------SLNTTVISSMEGTLGIKSYYSDDSSPYKEFSALFRRNFTSEY 317 (550)
Q Consensus 253 ~~~g~~~~~~~~i~~~~~~~~~~---------------~~~~~~~~~~~g~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~ 317 (550)
+++|+.++.|+||.++.|..... .......++.+|++.+.+..+ .++.+++|.++|++.+...+
T Consensus 227 ~~~g~~~~~~~~i~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~f~~~~~~~~~~~~ 305 (435)
T 1dp4_A 227 LNAGLTGEDYVFFHLDVFGQSLKSAQGLVPQKPWERGDGQDRSARQAFQAAKIITYKEP-DNPEYLEFLKQLKLLADKKF 305 (435)
T ss_dssp HHTTCCTTTCEEEEECTTCTTSCSSCTTSCBCTTCCSSSCHHHHHHHGGGEEEEEECCC-CSHHHHHHHHHHHHHHHHHH
T ss_pred HHcCCCCCCEEEEEEecccccccccccccccCCcccCCcchHHHHHHhheeEEEecCCC-CChhHHHHHHHHHHHhcCCC
Confidence 99999887799999987764320 001223456788887776443 45889999999887764321
Q ss_pred CCCCC--CCCCchhhHHhHHHHHHHHHHHhhccC---CCCHHHHHHHHHhCcccccceeEEEeCCCCCCCCceEEEEe--
Q 008863 318 PEEDH--FHPSIHALRAHDSIKIITEAIGRLNYN---ISSPEMLLRQMLSSDFSGLSGKIRFKDGELLNADTLRIVNV-- 390 (550)
Q Consensus 318 ~~~~~--~~~~~~~~~~yDav~~~a~Al~~~~~~---~~~~~~l~~~l~~~~~~G~tG~i~f~~~g~~~~~~~~i~~~-- 390 (550)
.|.. ..++.+++++|||++++++||+++..+ +.++++|+++|++++|.|++|+++||++|++. ..|.|+++
T Consensus 306 -~~~~~~~~~~~~~~~~ydav~~~a~Al~~~~~~~~~~~~~~~l~~~l~~~~f~g~~G~v~fd~~g~~~-~~~~i~~~~~ 383 (435)
T 1dp4_A 306 -NFTVEDGLKNIIPASFHDGLLLYVQAVTETLAQGGTVTDGENITQRMWNRSFQGVTGYLKIDRNGDRD-TDFSLWDMDP 383 (435)
T ss_dssp -CCCCCCSGGGHHHHHHHHHHHHHHHHHHHHHHTTCCTTCHHHHHHTTTTEEEEETTEEEEECTTSBBC-CCEEEEEECT
T ss_pred -CcccccchhhHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHhCceeeccceeEEECCCCCcc-ceeEEEEecC
Confidence 1111 135668889999999999999998321 34899999999999999999999999999986 79999999
Q ss_pred eCCeeeEEEEEeCCCC
Q 008863 391 VGKKYKELDFWLPNFG 406 (550)
Q Consensus 391 ~~~~~~~vG~w~~~~g 406 (550)
.++.+++||.|++..+
T Consensus 384 ~~g~~~~vg~~~~~~~ 399 (435)
T 1dp4_A 384 ETGAFRVVLNYNGTSQ 399 (435)
T ss_dssp TTCCEEEEEEECTTTC
T ss_pred CCCcEEEEEEecCCCc
Confidence 5678999999997654
No 13
>3qek_A NMDA glutamate receptor subunit; amino terminal domain, ION channel, NMDA receptor, allosteri modulation, phenylethanolamine, polyamine; HET: NAG BMA; 2.00A {Xenopus laevis} PDB: 3qel_A* 3qem_A* 3q41_A*
Probab=100.00 E-value=3.7e-45 Score=365.32 Aligned_cols=322 Identities=18% Similarity=0.279 Sum_probs=267.4
Q ss_pred CCcEEEEEEEecCCccchhHHHHHHHHHHHHhcCC--CCcEEEEEEecCCCCHHHHHHHHHH-hhhcCCeEEEEc-----
Q 008863 32 EEVTKIGAIVDANSQMGKQAITAMKIAVQNFNSDS--RNHKLSLQIRDHNRDPFQAATAAQE-LINKEKVKVIAG----- 103 (550)
Q Consensus 32 ~~~i~IG~i~~~~~~~g~~~~~a~~~Av~~iN~~~--~~~~l~~~~~d~~~~~~~a~~~~~~-li~~~~v~aiiG----- 103 (550)
+++|+||+++|++ ....|+++|++++|+++ .+++|+++..|+++||..+.+.+|+ |++ ++|.+|+|
T Consensus 3 ~~~i~IG~i~~~s-----~~~~~~~lAv~~iN~~~~~~~~~l~~~~~d~~~d~~~a~~~~~~~Li~-~~V~aiiG~~~~~ 76 (384)
T 3qek_A 3 PKIVNIGAVLSTK-----KHEQIFREAVNQANKRHFTRKIQLQATSVTHRPNAIQMALSVCEDLIS-SQVYAILVSHPPA 76 (384)
T ss_dssp CEEEEEEEEESSH-----HHHHHHHHHHHHHHHHSCCSSEEEEEEEEECCSSHHHHHHHHHHHTGG-GTEEEEEECC---
T ss_pred ceEEEEeEEeeCc-----hHHHHHHHHHHHHhccccCCceEEEEEEecccCCHHHHHHHHHHHHHH-cCceEEEEecCCC
Confidence 4689999999998 77899999999999987 3678999999999999999988777 787 49999999
Q ss_pred CCChHHHHHHHHhhccCCccEEeccCCCCCCcc-cCCCCCeEEEEecCcHHhHHHHHHHHHHcCCeEEEEEEEcCCCCCc
Q 008863 104 METWEETAVVAEIASRVQVPILSFAAPAVTPLS-MSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGD 182 (550)
Q Consensus 104 ~~~s~~~~~v~~~~~~~~iP~is~~~~~~~~~~-~~~~~~~~~~~~p~~~~~~~al~~~l~~~~w~~v~ii~~~~~~g~~ 182 (550)
|.++..+.+++++++.+++|+|+++++ ++.+ ++..|||+||+.|++..++.++++++++++|++|++||+|++||
T Consensus 77 ~~~s~~~~a~~~~~~~~~iP~is~~~~--~~~ls~~~~~~~~fr~~~~~~~~~~a~~~~~~~~gw~~v~ii~~d~~~G-- 152 (384)
T 3qek_A 77 PTDHLTPTPISYTAGFYRIPVIGLTTR--MSIYSDKSIHLSFLRTVPPYSHQALVWFEMMRLFNWNHVILIVSDDHEG-- 152 (384)
T ss_dssp -----CCHHHHHHHHTTTCCEEESSCC--CGGGGCSSSCTTEEESSCCGGGHHHHHHHHHHHTTCCEEEEEEESSHHH--
T ss_pred CccchhHHHHHHHHhcCCCCEEecccC--chhccCcccCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcCccc--
Confidence 567778889999999999999999988 6664 46688999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHhcCCCeEEE-----------EE-------eecCCCCCCCCChHHHHHHHHHhhcCCCeEEEEEcCCHHH
Q 008863 183 SGKLALLAEALQNVSSSEIQ-----------SR-------LVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDM 244 (550)
Q Consensus 183 ~~~~~~l~~~l~~~g~~~v~-----------~~-------~~~~~~~~~~~~~~d~~~~l~~i~~~~~~~ii~~~~~~~~ 244 (550)
....+.|++.+++.| +++. +. +.++... ....|+...+++|+++++|+|++ ++....
T Consensus 153 ~~~~~~~~~~~~~~g-~~v~~~~~~~~~~v~~~~~~~~~~~~v~~~~---~~~~d~~~~l~~i~~~~~~vii~-~~~~~~ 227 (384)
T 3qek_A 153 RAAQKKLETLLEGKE-SKSKKRNYENLDQLSYDNKRGPKADKVLQFE---PGTKNLTALLLEAKELEARVIIL-SASEDD 227 (384)
T ss_dssp HHHHHHHHHHHC---------------CCSCCCCCCCCEEEEEEEEC---TTCSCCHHHHHHHHTSSCCEEEE-ECCHHH
T ss_pred HHHHHHHHHHHHhcc-CccccccccccceeeeccccCcccceecccC---CchhhHHHHHHHHHhcCCcEEEE-ECCHHH
Confidence 999999999999988 7531 11 1111100 02368999999999999999999 999999
Q ss_pred HHHHHHHHHHcCCCCCCEEEEEeccchhhcccCChhHHhhcCceEEEEeecCCCChhHHHHHHHHHHHhhccCCCCCCCC
Q 008863 245 TIHLFTEANRMGLVGKDSVWIVTNTVANALDSLNTTVISSMEGTLGIKSYYSDDSSPYKEFSALFRRNFTSEYPEEDHFH 324 (550)
Q Consensus 245 ~~~il~~a~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~ 324 (550)
+..++++++++||++++|+||.++.|..... .....+|++++..+...
T Consensus 228 ~~~~~~~a~~~g~~~~~~~~i~~~~~~~~~~-----~~~~~~g~lg~~~~~~~--------------------------- 275 (384)
T 3qek_A 228 ATAVYKSAAMLDMTGAGYVWLVGEREISGSA-----LRYAPDGIIGLQLINGK--------------------------- 275 (384)
T ss_dssp HHHHHHHHHHTTCSSTTCEEECCSGGGSGGG-----GSSCCTTCEEEEETTTT---------------------------
T ss_pred HHHHHHHHHHcCCccCCeEEEEecccccccc-----ccccCCccEEEEEcCCC---------------------------
Confidence 9999999999999998899999998764321 23567899998875322
Q ss_pred CCchhhHHhHHHHHHHHHHHhhcc----------------CCCCHHHHHHHHHhCcc-cccceeEEEeCCCCCCCCceEE
Q 008863 325 PSIHALRAHDSIKIITEAIGRLNY----------------NISSPEMLLRQMLSSDF-SGLSGKIRFKDGELLNADTLRI 387 (550)
Q Consensus 325 ~~~~~~~~yDav~~~a~Al~~~~~----------------~~~~~~~l~~~l~~~~~-~G~tG~i~f~~~g~~~~~~~~i 387 (550)
..++.+||||+++++|++++.. .|..+..|.+.+++++| +|++|++.||++|++.+..|+|
T Consensus 276 --~~~~~~YdAV~~~a~Al~~~~~~~~~~~~~~~c~~~~~~~~~~~~l~~~~~~~~f~~G~~G~v~fd~~G~~~~~~~~I 353 (384)
T 3qek_A 276 --NESAHISDAVAVVAQAIHELFEMENITDPPRGCVGNTNIWKTGPLFKRVLMSSKYPDGVTGRIEFNEDGDRKFAQYSI 353 (384)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHTSSSCCCCCSCCTTCCCCCTTHHHHHHHHHTCCEEEETTEEECBCTTSCBCSCCEEE
T ss_pred --chhHHHHHHHHHHHHHHHHHHhccCCCCCCCccccCCCccccHHHHHHHHhcCCccCCCCcceEECCCCCCCcccEEE
Confidence 1267899999999999998753 14578899999999998 9999999999999987799999
Q ss_pred EEeeCCeeeEEEEEe
Q 008863 388 VNVVGKKYKELDFWL 402 (550)
Q Consensus 388 ~~~~~~~~~~vG~w~ 402 (550)
+++++.++++||.|+
T Consensus 354 ~~~~~~~~~~VG~w~ 368 (384)
T 3qek_A 354 MNLQNRKLVQVGIFN 368 (384)
T ss_dssp EEEETTEEEEEEEEC
T ss_pred EEEcCCceEEEEEEe
Confidence 999999999999998
No 14
>3ks9_A Mglur1, metabotropic glutamate receptor 1; glutamate receptors, dimerization, glutamic acid BIN structural genomics, structural genomics consortium; HET: Z99 NAG; 1.90A {Homo sapiens} SCOP: c.93.1.1 PDB: 1ewk_A* 1ewt_A* 1ewv_A 1isr_A* 1iss_A* 3lmk_A*
Probab=100.00 E-value=1.8e-44 Score=370.20 Aligned_cols=358 Identities=18% Similarity=0.268 Sum_probs=299.1
Q ss_pred CCCcEEEEEEEecCC-----------------ccchhHHHHHHHHHHHHhcCC---CCcEEEEEEecCCCCHHHHHHHHH
Q 008863 31 IEEVTKIGAIVDANS-----------------QMGKQAITAMKIAVQNFNSDS---RNHKLSLQIRDHNRDPFQAATAAQ 90 (550)
Q Consensus 31 ~~~~i~IG~i~~~~~-----------------~~g~~~~~a~~~Av~~iN~~~---~~~~l~~~~~d~~~~~~~a~~~~~ 90 (550)
.+++|.||++||.+. ..|.+...|+.+|+|+||+++ ||++|+++++|+++++..|++.+.
T Consensus 14 ~~GDi~iGglf~vh~~~~~~~~~~~~c~~~~~~~g~~~~~a~~~AieeIN~~~~lLpn~tLg~~i~D~~~~~~~a~~~a~ 93 (496)
T 3ks9_A 14 MDGDVIIGALFSVHHQPPAEKVPERKCGEIREQYGIQRVEAMFHTLDKINADPVLLPNITLGSEIRDSCWHSSVALEQSI 93 (496)
T ss_dssp ECCSEEEEEEECSBCCCCGGGTTTTCCCCBCTTTTHHHHHHHHHHHHHHHTCSSSSTTCCEEEEEEECTTCHHHHHHHHH
T ss_pred cCCCEEEEEEEEeEEcCccCCCCCCCCccccchhhHHHHHHHHHHHHHHhCCCCCCCCceEeEEEEEcCCCcHHHHHHHH
Confidence 457899999999752 145778899999999999998 799999999999999999999999
Q ss_pred Hhh----------------------------hcCCeEEEEcCCChHHHHHHHHhhccCCccEEeccCCCCCCcc-cCCCC
Q 008863 91 ELI----------------------------NKEKVKVIAGMETWEETAVVAEIASRVQVPILSFAAPAVTPLS-MSRRW 141 (550)
Q Consensus 91 ~li----------------------------~~~~v~aiiG~~~s~~~~~v~~~~~~~~iP~is~~~~~~~~~~-~~~~~ 141 (550)
+++ .+++|.+||||.+|..+.+++++++.+++|+|+++++ ++.+ ++.++
T Consensus 94 ~ll~~~~~s~~~~~~~n~~C~~~~~~~~~~~~~~~v~aviG~~~S~~s~ava~i~~~~~iP~Is~~a~--~~~lsd~~~~ 171 (496)
T 3ks9_A 94 EFIRDSLISIRDEKDGINRCLPDGQSLPPGRTKKPIAGVIGPGSSSVAIQVQNLLQLFDIPQIAYSAT--SIDLSDKTLY 171 (496)
T ss_dssp HHHSTTC--------------------------CCEEEEECCSSHHHHHHHHHHHGGGTCCEEESSCC--CGGGGCTTTC
T ss_pred HHHHhhhccccccCCCCccccCcccccccccCCCceEEEECCCccHHHHHHHHHHhhcceeEECCCcC--CccccCccCC
Confidence 998 3578999999999999999999999999999999998 7774 56679
Q ss_pred CeEEEEecCcHHhHHHHHHHHHHcCCeEEEEEEEcCCCCCcchhHHHHHHHHhcCCCeEEEEEeecCCCCCCCCChHHHH
Q 008863 142 PYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVR 221 (550)
Q Consensus 142 ~~~~~~~p~~~~~~~al~~~l~~~~w~~v~ii~~~~~~g~~~~~~~~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~ 221 (550)
||+||+.|++..++.++++++++|+|+||++|++|++|| ....+.+++.+++.| +||++.+.++... ...++.
T Consensus 172 p~~frt~psd~~~~~ai~~ll~~fgw~~V~li~~dd~~G--~~~~~~~~~~~~~~G-i~v~~~~~i~~~~----~~~d~~ 244 (496)
T 3ks9_A 172 KYFLRVVPSDTLQARAMLDIVKRYNWTYVSAVHTEGNYG--ESGMDAFKELAAQEG-LSIAHSDKIYSNA----GEKSFD 244 (496)
T ss_dssp TTEEESSCCTHHHHHHHHHHHHHTTCCEEEEEEESSHHH--HHHHHHHHHHHHHTT-CEEEEEEEECTTC----CHHHHH
T ss_pred CceEEecCChHHHHHHHHHHHHHcCCcEEEEEEeccHHH--HHHHHHHHHHHHHcC-ceEEEEEEECCCC----CHHHHH
Confidence 999999999999999999999999999999999999999 999999999999999 9999988776433 567999
Q ss_pred HHHHHhhcC--CCeEEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEEeccchhhcccCChhHHhhcCceEEEEeecCCCC
Q 008863 222 GELKKVQDK--QSRVFIVLQASLDMTIHLFTEANRMGLVGKDSVWIVTNTVANALDSLNTTVISSMEGTLGIKSYYSDDS 299 (550)
Q Consensus 222 ~~l~~i~~~--~~~~ii~~~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 299 (550)
.++++|++. ++++|++ ++....+..++++++++|+.++ +.||.++.|........ .....++|++++..+....
T Consensus 245 ~~l~~i~~~~~~a~vii~-~~~~~~~~~l~~~~~~~g~~~k-~~~i~s~~w~~~~~~~~-~~~~~~~G~l~~~~~~~~i- 320 (496)
T 3ks9_A 245 RLLRKLRERLPKARVVVC-FCEGMTVRGLLSAMRRLGVVGE-FSLIGSDGWADRDEVIE-GYEVEANGGITIKLQSPEV- 320 (496)
T ss_dssp HHHHHHHTTTTTTCEEEE-ECCHHHHHHHHHHHHHHTCCSC-CEEEECTTTTTCHHHHT-TCHHHHTTCEEEEECCCCC-
T ss_pred HHHHHHHhccCceEEEEE-ecChHHHHHHHHHHHHhCCCCc-EEEEEechhcccccccc-ccccccCceEEEeccCCcC-
Confidence 999999985 8899999 9999999999999999999864 57899998864322211 1235678999999876655
Q ss_pred hhHHHHHHH----------HHHHhhccCCCCC-------------CCCC----------CchhhHHhHHHHHHHHHHHhh
Q 008863 300 SPYKEFSAL----------FRRNFTSEYPEED-------------HFHP----------SIHALRAHDSIKIITEAIGRL 346 (550)
Q Consensus 300 ~~~~~f~~~----------~~~~~~~~~~~~~-------------~~~~----------~~~~~~~yDav~~~a~Al~~~ 346 (550)
|.+++|+++ |.+.||+..+.|. .|.. ......+|+||+++|+||+++
T Consensus 321 pgf~~fl~~~~p~~~p~d~~l~~~W~~~f~C~~~~~~~~~~~~~~~C~~~~~l~~~~~~~~~~~~vy~AVyavAhALh~m 400 (496)
T 3ks9_A 321 RSFDDYFLKLRLDTNTRNPWFPEFWQHRFQCRLPGHLLENPNFKRICTGNESLEENYVQDSKMGFVINAIYAMAHGLQNM 400 (496)
T ss_dssp HHHHHHHTTCCTTTCCSCTTHHHHHHHHTTCBCCC-----CCCSSBCCSCCCTTTTCCCCTTHHHHHHHHHHHHHHHHHH
T ss_pred cchHhHhccCCcCCCCCCHHHHHHHHHHcCCCCCCCccccccccCCCCCcccccccccccchHHHHHHHHHHHHHHHHHH
Confidence 899998865 3444555444431 1111 112346999999999999988
Q ss_pred cc---------C----CCCHHHHHHHHHhCcccccce-eEEEeCCCCCCCCceEEEEeeC-----CeeeEEEEEe
Q 008863 347 NY---------N----ISSPEMLLRQMLSSDFSGLSG-KIRFKDGELLNADTLRIVNVVG-----KKYKELDFWL 402 (550)
Q Consensus 347 ~~---------~----~~~~~~l~~~l~~~~~~G~tG-~i~f~~~g~~~~~~~~i~~~~~-----~~~~~vG~w~ 402 (550)
.. | ...+++|..+|++++|.+.+| .+.||++|+.. ..|+|++++. ..+++||.|+
T Consensus 401 ~~~~~~~~~~~c~~~~~~~~~qL~~~Lk~v~f~~~~g~~v~fd~~gd~~-~~YdI~n~~~~~~~~~~~~~VG~~~ 474 (496)
T 3ks9_A 401 HHALCPGHVGLCDAMKPIDGSKLLDFLIKSSFIGVSGEEVWFDEKGDAP-GRYDIMNLQYTEANRYDYVHVGTWH 474 (496)
T ss_dssp HHHHSTTCSSCCGGGSSCCHHHHHHHHHTCEEECTTSCEEECCTTSCCC-CEEEEEEEEECC--CEEEEEEEEEE
T ss_pred HhccCCCCCCCCcCCCCCCHHHHHHHHHhcCCcCCCCCEEEECCCCCcc-ceEEEEEEEECCCCCEEEEEEEEEe
Confidence 53 1 236889999999999999999 79999999985 8999999973 3478999997
No 15
>3mq4_A Mglur7, metabotropic glutamate receptor 7; glutamate receptors, dimerization, glutamic acid BIN structural genomics, structural genomics consortium; HET: Z99; 2.80A {Homo sapiens} SCOP: c.93.1.0 PDB: 2e4z_A*
Probab=100.00 E-value=9.7e-46 Score=378.94 Aligned_cols=357 Identities=18% Similarity=0.291 Sum_probs=270.4
Q ss_pred CCcEEEEEEEecCC-------------ccchhHHHHHHHHHHHHhcCC---CCcEEEEEEecCCCCHHHHHHHHHHhhhc
Q 008863 32 EEVTKIGAIVDANS-------------QMGKQAITAMKIAVQNFNSDS---RNHKLSLQIRDHNRDPFQAATAAQELINK 95 (550)
Q Consensus 32 ~~~i~IG~i~~~~~-------------~~g~~~~~a~~~Av~~iN~~~---~~~~l~~~~~d~~~~~~~a~~~~~~li~~ 95 (550)
+++|+||+++|.++ ..|.+...|+++|+|+||+++ ||++|+++++|+++++..+++.+.++++.
T Consensus 14 ~gdi~IG~lf~l~~~~~~~~~C~~~~~~~g~~~~~a~~~AieeIN~~~~lLpn~~L~~~i~D~~~~~~~a~~~a~~ll~~ 93 (481)
T 3mq4_A 14 EGDVTLGGLFPVHAKGPSGVPCGDIKRENGIHRLEAMLYALDQINSDPNLLPNVTLGARILDTCSRDTYALEQSLTFVQA 93 (481)
T ss_dssp CCSEEEEEEECSBCCC-----CCSBCTTTTHHHHHHHHHHHHHHTTCSSSSSSCCEEEEEEECTTCHHHHHHHHGGGGGG
T ss_pred CCCEEEEEEEEceeCCCCCCCCccccchhhHHHHHHHHHHHHHHhCCCCcCCCceEEEEEEeCCCChHHHHHHHHHHHhC
Confidence 46899999999983 357889999999999999998 79999999999999999999999999874
Q ss_pred ----------------------CCeEEEEcCCChHHHHHHHHhhccCCccEEeccCCCCCCc-ccCCCCCeEEEEecCcH
Q 008863 96 ----------------------EKVKVIAGMETWEETAVVAEIASRVQVPILSFAAPAVTPL-SMSRRWPYLIRMASNDS 152 (550)
Q Consensus 96 ----------------------~~v~aiiG~~~s~~~~~v~~~~~~~~iP~is~~~~~~~~~-~~~~~~~~~~~~~p~~~ 152 (550)
++|.+||||.+|..+.+++++++.+++|+|+++++ ++. .++.+|||+||+.|++.
T Consensus 94 ~~~~~~pny~C~~~~~~~~~~~~~v~aiiG~~~S~~s~ava~~~~~~~iP~Is~~a~--~~~lsd~~~~p~~fr~~psd~ 171 (481)
T 3mq4_A 94 LIQKDTSDVRCTNGEPPVFVKPEKVVGVIGASGSSVSIMVANILRLFQIPQISYAST--APELSDDRRYDFFSRVVPPDS 171 (481)
T ss_dssp GSCCCC--------------CCCCEEEEECCSSHHHHHHHHHHHTTTTCCEEESSCC--CGGGGCTTTTTTEEESSCCTH
T ss_pred CcccCCCCcccCCCCCcccccCCCcEEEEcCCCcHHHHHHHHHHHhCCCCEEccccC--CccccCcccCCceEEecCchH
Confidence 68999999999999999999999999999999998 777 45678999999999999
Q ss_pred HhHHHHHHHHHHcCCeEEEEEEEcCCCCCcchhHHHHHHHHhc-CCCeEEEEEeecCCCCCCCCChH--HHHHHHHHhh-
Q 008863 153 EQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLAEALQN-VSSSEIQSRLVLPPISSISDPKE--AVRGELKKVQ- 228 (550)
Q Consensus 153 ~~~~al~~~l~~~~w~~v~ii~~~~~~g~~~~~~~~l~~~l~~-~g~~~v~~~~~~~~~~~~~~~~~--d~~~~l~~i~- 228 (550)
.++.++++++++|||+||++|++|++|| ....+.+++.+.+ .| +||.+.+.++... ... ++...+.+++
T Consensus 172 ~~~~a~~~ll~~fgw~~V~li~~d~~~G--~~~~~~~~~~~~~~~G-i~va~~~~i~~~~----~~~~~d~~~~l~~i~~ 244 (481)
T 3mq4_A 172 FQAQAMVDIVKALGWNYVSTLASEGSYG--EKGVESFTQISKEAGG-LSIAQSVRIPQER----KDRTIDFDRIIKQLLD 244 (481)
T ss_dssp HHHHHHHHHHHHHTCCEEEEC---CHHH--HHHHHHHHHCC---CC-CEECCCCCCCCC----------CCSHHHHCCCC
T ss_pred HHHHHHHHHHHHCCCeEEEEEEEcchhH--HHHHHHHHHHHHHhCC-EEEEEEEEcCCCC----ccchHHHHHHHHHHHh
Confidence 9999999999999999999999999999 9999999988875 78 9999887776432 223 7788899998
Q ss_pred cCCCeEEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEEeccchhhcccCChhHHhhcCceEEEEeecCCCChhHHHHHHH
Q 008863 229 DKQSRVFIVLQASLDMTIHLFTEANRMGLVGKDSVWIVTNTVANALDSLNTTVISSMEGTLGIKSYYSDDSSPYKEFSAL 308 (550)
Q Consensus 229 ~~~~~~ii~~~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~f~~~ 308 (550)
++++++||+ .+....+..++++++++|+.++ ++||.++.|........ .....++|++++..+.... |.+++|+.+
T Consensus 245 ~s~a~vIi~-~~~~~~~~~l~~~~~~~g~~~~-~~wI~s~~w~~~~~~~~-~~~~~~~G~l~~~~~~~~i-pgf~~fl~~ 320 (481)
T 3mq4_A 245 TPNSRAVVI-FANDEDIKQILAAAKRADQVGH-FLWVGSDSWGSKINPLH-QHEDIAEGAITIQPKRATV-EGFDAYFTS 320 (481)
T ss_dssp C----CEEE-CCCSSHHHHHC----------C-CCEEEC------------------CCCEEEEECCCCC-HHHHHHHHT
T ss_pred cCCCEEEEE-EEChHHHHHHHHHHHHccCCcc-eEEEEECcccccccccc-ccchhhccEEEEecCcCcc-ccHHHHhhc
Confidence 579999999 9999999999999999999763 69999999875432221 2245688999999876655 899998765
Q ss_pred H----------HHHhhccCCCCC-------------CCC------------CCchhhHHhHHHHHHHHHHHhhcc--C--
Q 008863 309 F----------RRNFTSEYPEED-------------HFH------------PSIHALRAHDSIKIITEAIGRLNY--N-- 349 (550)
Q Consensus 309 ~----------~~~~~~~~~~~~-------------~~~------------~~~~~~~~yDav~~~a~Al~~~~~--~-- 349 (550)
+ .+.+|+..+.|. .|. .......+||||+++|+||+++.. +
T Consensus 321 ~~p~~~p~d~~~~~~w~~~f~C~~~~~~~~~~~~~~~Ct~~e~l~~~~~~~~~~~~~~vy~AVyavA~ALh~m~~~~~~~ 400 (481)
T 3mq4_A 321 RTLENNRRNVWFAEYWEENFNCKLTISGSKKEDTDRKCTGQERIGKDSNYEQEGKVQFVIDAVYAMAHALHHMNKDLCAD 400 (481)
T ss_dssp CCTTTCTTCTTHHHHHHHHHTCCC------------CCCSCCCTTTSSCCCCCTTHHHHHHHHHHHHHHHHHHHHHHCC-
T ss_pred CCcCcCCCCHHHHHHHHHhcCCCCCCccccccccCCCCCCccccCcCCcccccchhhhHHHHHHHHHHHHHHHHHhhCCC
Confidence 2 334444332221 011 013345699999999999998853 1
Q ss_pred ---------CCCHHHHHHHHHhCcccccce-eEEEeCCCCCCCCceEEEEeeC-----CeeeEEEEEe
Q 008863 350 ---------ISSPEMLLRQMLSSDFSGLSG-KIRFKDGELLNADTLRIVNVVG-----KKYKELDFWL 402 (550)
Q Consensus 350 ---------~~~~~~l~~~l~~~~~~G~tG-~i~f~~~g~~~~~~~~i~~~~~-----~~~~~vG~w~ 402 (550)
..++++|+++|++++|.+.+| .+.||++|+.. ..|+|++++. ..+++||.|+
T Consensus 401 ~~~~c~~~~~~~~~qL~~~Lk~v~F~~~~G~~v~fd~~Gd~~-~~YdI~n~~~~~~~~~~~~~VG~~~ 467 (481)
T 3mq4_A 401 YRGVCPEMEQAGGKKLLKYIRNVNFNGSAGTPVMFNKNGDAP-GRYDIFQYQTTNTSNPGYRLIGQWT 467 (481)
T ss_dssp ---CCHHHHTSCHHHHHHHHHTCEEECTTSSEEECCTTSCCC-CEEEEEEEC-----CCCEEEEEEEE
T ss_pred CCCCCCCCCCcCHHHHHHHHhcceeecCCCCEEEECCCCCCc-eeEEEEEEEECCCCcEEEEEEEEEc
Confidence 246789999999999999999 89999999985 8999999962 2678999998
No 16
>3qel_B Glutamate [NMDA] receptor subunit epsilon-2; ION channel, allosteric modulation, phenylethanolamine, N-glycosylation, extracellular; HET: NAG BMA MAN FUC QEL; 2.60A {Rattus norvegicus} PDB: 3qem_B* 3jpw_A* 3jpy_A*
Probab=100.00 E-value=2.3e-41 Score=332.98 Aligned_cols=327 Identities=17% Similarity=0.223 Sum_probs=250.4
Q ss_pred CcEEEEEEEecCCccchhHHHHHHHHHHHHhcCCCCcEEEEEEe-cCCCCHHHHHHHHHHhhhcCCeEEEEc-CCChHHH
Q 008863 33 EVTKIGAIVDANSQMGKQAITAMKIAVQNFNSDSRNHKLSLQIR-DHNRDPFQAATAAQELINKEKVKVIAG-METWEET 110 (550)
Q Consensus 33 ~~i~IG~i~~~~~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~-d~~~~~~~a~~~~~~li~~~~v~aiiG-~~~s~~~ 110 (550)
..+.||++|..+.. +.+++.|++..|...+.+++..++. .+.+||..+.+.+|+++..++|.|||| |.++..+
T Consensus 3 ~~~~v~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dp~~~~~~~C~~l~~~~V~aiIgg~~s~~~a 77 (364)
T 3qel_B 3 PSIGIAVILVGTSD-----EVAIKDAHEKDDFHHLSVVPRVELVAMNETDPKSIITRICDLMSDRKIQGVVFADDTDQEA 77 (364)
T ss_dssp CEEEEEEEEESSCC-----HHHHTC---------CCSEEEEEEEEECCCSHHHHHHHHHHHHHHSCEEEEEEEESSCCTH
T ss_pred CceEEEEEEcccch-----hhhhccccCccccccCCccceEEEEEecCCCHHHHHHHHHHHHHhCCeEEEEecCCCCchH
Confidence 57999999977642 8999999999997766678887655 578899999999999998778988875 4544444
Q ss_pred HH--HHHhhccCCccEEeccCCCCCC-c-ccCCCCCeEEEEecCcHHhHHHHHHHHHHcCCeEEEEEEEcCCCCCcchhH
Q 008863 111 AV--VAEIASRVQVPILSFAAPAVTP-L-SMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKL 186 (550)
Q Consensus 111 ~~--v~~~~~~~~iP~is~~~~~~~~-~-~~~~~~~~~~~~~p~~~~~~~al~~~l~~~~w~~v~ii~~~~~~g~~~~~~ 186 (550)
.+ ++.+|+.++||+|+++++ ++ . .++.++|++||+.|++..+++++++++++|||++|++||+|+ .| ...+.
T Consensus 78 ~a~~v~~i~~~~~iP~IS~~at--~~~~lsd~~~~p~f~Rt~psd~~q~~ai~~ll~~fgW~~V~iI~~d~-~g-~~~~~ 153 (364)
T 3qel_B 78 IAQILDFISAQTLTPILGIHGG--SSMIMADKDESSMFFQFGPSIEQQASVMLNIMEEYDWYIFSIVTTYF-PG-YQDFV 153 (364)
T ss_dssp HHHHHHHHHHHHTCCEEEEEGG--GGSCCSSCCTTCCEEESSCCHHHHHHHHHHHHHHTTCCEEEEEEESC-TT-HHHHH
T ss_pred HHHHHHHHHhccCCCEEEeecC--CCCcCCCcccCceEEEcCCChHHHHHHHHHHHHHCCCeEEEEEEeCC-cc-HHHHH
Confidence 44 899999999999999998 77 5 566789999999999999999999999999999999999985 43 23344
Q ss_pred HHHHHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHH-HHhhcCCCeEEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEE
Q 008863 187 ALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGEL-KKVQDKQSRVFIVLQASLDMTIHLFTEANRMGLVGKDSVWI 265 (550)
Q Consensus 187 ~~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l-~~i~~~~~~~ii~~~~~~~~~~~il~~a~~~g~~~~~~~~i 265 (550)
+.+++.+...+ +|+.....++... ...+++..+ ++++++++++||+ +|+.+.+..++++|.++||++++|+||
T Consensus 154 ~~l~~~~~~~~-ici~~~~~i~~~~----~~~~~~~~l~~~i~~~~a~ViIv-~~~~~~~~~ll~~a~~~g~~~~~y~wI 227 (364)
T 3qel_B 154 NKIRSTIENSF-VGWELEEVLLLDM----SLDDGDSKIQNQLKKLQSPIILL-YCTKEEATYIFEVANSVGLTGYGYTWI 227 (364)
T ss_dssp HHHHHHHHTCS-SCCEEEEEEEECT----TSCSSSCHHHHHHTTCCCSEEEE-ESCHHHHHHHHHHHHTTTCSSTTCEEE
T ss_pred HHHHHHhhccc-cceEEEEEEccCC----CcccHHHHHHHHHHccCCcEEEE-EcCHHHHHHHHHHHHHcCCCCCCeEEE
Confidence 44444443444 4666655443322 224567778 6899999999999 999999999999999999999999999
Q ss_pred EeccchhhcccCChhHHhhcCceEEEEeecCCCChhHHHHHHHHHHHhhccCCCCCCCCCCchhhHHhHHHHHHHHHHHh
Q 008863 266 VTNTVANALDSLNTTVISSMEGTLGIKSYYSDDSSPYKEFSALFRRNFTSEYPEEDHFHPSIHALRAHDSIKIITEAIGR 345 (550)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~yDav~~~a~Al~~ 345 (550)
+++.+....+... ..+..|++++.... |. ....+++||||+++|+|+++
T Consensus 228 ~t~~~~~~~~~~~---~~~~~g~~~~~~~~------------------W~----------~~~~~~~yDaV~~~A~A~~~ 276 (364)
T 3qel_B 228 VPSLVAGDTDTVP---SEFPTGLISVSYDE------------------WD----------YGLPARVRDGIAIITTAASD 276 (364)
T ss_dssp ECHHHHCSTTCCC---TTSCTTCEECCBCT------------------TT----------SCHHHHHHHHHHHHHHHHHH
T ss_pred EecccccCccccc---ccCCCceEEEeecc------------------ch----------hhHHHHHHHHHHHHHHHHHH
Confidence 9988754433322 24567877765421 10 12467899999999999987
Q ss_pred hcc-----------C-------CCCHHHHHHHHHhCcccccceeEEEeCCCCCCCCceEEEEee-CCeeeEEEEEeCCCC
Q 008863 346 LNY-----------N-------ISSPEMLLRQMLSSDFSGLSGKIRFKDGELLNADTLRIVNVV-GKKYKELDFWLPNFG 406 (550)
Q Consensus 346 ~~~-----------~-------~~~~~~l~~~l~~~~~~G~tG~i~f~~~g~~~~~~~~i~~~~-~~~~~~vG~w~~~~g 406 (550)
+.. | |.+|..|.++|++++|+|+ ++.||++|+|.++.|+|++++ +.++++||.|+. .+
T Consensus 277 ~~~~~~~i~~~~~~C~~~~~~~~~~G~~l~~~l~~v~f~Gl--~i~F~~~G~~~~~~~~Iinl~~~~~~~~VG~W~~-~~ 353 (364)
T 3qel_B 277 MLSEHSFIPEPKSSCYNTHEKRIYQSNMLNRYLINVTFEGR--DLSFSEDGYQMHPKLVIILLNKERKWERVGKWKD-KS 353 (364)
T ss_dssp HHTTTSCCCCCCSCSTTTTTGGGGCCSTTHHHHTCCEETTE--ECCBCTTSSBSSCCEEEEEECTTSCEEEEEEECS-SC
T ss_pred HHhccCCCCCCCCCCCCCCCCccCCHHHHHHHHhhceEeCc--eEEECCCCCcccceEEEEEEcCCCCcEEEEEECC-Ce
Confidence 643 1 3477899999999999998 899999999999999999998 688999999983 34
Q ss_pred Cc
Q 008863 407 FS 408 (550)
Q Consensus 407 ~~ 408 (550)
+.
T Consensus 354 L~ 355 (364)
T 3qel_B 354 LQ 355 (364)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 17
>3i45_A Twin-arginine translocation pathway signal protei; structural genomics; 1.36A {Rhodospirillum rubrum}
Probab=100.00 E-value=1.1e-39 Score=326.13 Aligned_cols=351 Identities=19% Similarity=0.185 Sum_probs=293.9
Q ss_pred CCcEEEEEEEecCC--ccchhHHHHHHHHHHHHhcCC--CC-cEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEcCCC
Q 008863 32 EEVTKIGAIVDANS--QMGKQAITAMKIAVQNFNSDS--RN-HKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMET 106 (550)
Q Consensus 32 ~~~i~IG~i~~~~~--~~g~~~~~a~~~Av~~iN~~~--~~-~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG~~~ 106 (550)
+++|+||+++|+++ ..|.....|+++|++++|+++ .| ++|+++++|+++++..+.+.+++|+.+++|.+||||.+
T Consensus 3 ~~~i~IG~~~p~sg~~~~g~~~~~g~~~a~~~iN~~ggi~Gg~~i~l~~~D~~~~~~~~~~~~~~li~~~~v~aiiG~~~ 82 (387)
T 3i45_A 3 LEAIRIGEINSYSQIPAFTLPYRNGWQLAVEQINAAGGLLGGRPLEVISRDDGGDPGKAVTAAQELLTRHGVHALAGTFL 82 (387)
T ss_dssp CCCEEEEEEECTTTCHHHHHHHHHHHHHHHHHHHHTTCBTTTBCEEEEEEECTTCHHHHHHHHHHHHHHHCCSEEEECCS
T ss_pred CCCEEEEEeecCCCchhhhHHHHHHHHHHHHHHHhcCCCCCCcceEEEEecCCCCHHHHHHHHHHHHHhcCCEEEECCcc
Confidence 46899999999986 346678899999999999998 34 99999999999999999999999998679999999999
Q ss_pred hHHHHHHHHhhccCCccEEeccCCCCCCccc-CCCCCeEEEEecCcHHhHHHHHHHHHHcCCeEEEEEEEcCCCCCcchh
Q 008863 107 WEETAVVAEIASRVQVPILSFAAPAVTPLSM-SRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGK 185 (550)
Q Consensus 107 s~~~~~v~~~~~~~~iP~is~~~~~~~~~~~-~~~~~~~~~~~p~~~~~~~al~~~l~~~~w~~v~ii~~~~~~g~~~~~ 185 (550)
+..+.++++++...+||+|++.++ ++.+. ...+||+||+.|++..++.++++++.+++|++|++|+++++|| ...
T Consensus 83 s~~~~a~~~~~~~~~ip~i~~~~~--~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~l~~~g~~~vaii~~~~~~g--~~~ 158 (387)
T 3i45_A 83 SHVGLAVSDFARQRKVLFMASEPL--TDALTWEKGNRYTYRLRPSTYMQAAMLAAEAAKLPITRWATIAPNYEYG--QSA 158 (387)
T ss_dssp HHHHHHHHHHHHHHTCCEEECSCC--CGGGTTTTCCTTEEECSCCHHHHHHHHHHHHTTSSCCEEEEECCSSHHH--HHH
T ss_pred hHHHHHHHHHHHHcCceEEecCCC--chhhhhccCCCCEEEeCCChHHHHHHHHHHHHHcCCCeEEEEeCCchHh--HHH
Confidence 999999999999999999999887 56543 5578999999999999999999999999999999999998999 999
Q ss_pred HHHHHHHHhcC--CCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcCCCeEEEEEcCCHHHHHHHHHHHHHcCCCCCCEE
Q 008863 186 LALLAEALQNV--SSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGLVGKDSV 263 (550)
Q Consensus 186 ~~~l~~~l~~~--g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~~ii~~~~~~~~~~~il~~a~~~g~~~~~~~ 263 (550)
.+.+++.+++. | ++++....++... .|+...++++++.++++|++ .+....+..++++++++|+... +
T Consensus 159 ~~~~~~~l~~~~~g-~~vv~~~~~~~~~------~d~~~~~~~i~~~~~d~v~~-~~~~~~~~~~~~~~~~~g~~~~--~ 228 (387)
T 3i45_A 159 VARFKELLLAARPE-VTFVAEQWPALYK------LDAGPTVQALQQAEPEGLFN-VLFGADLPKFVREGRVRGLFAG--R 228 (387)
T ss_dssp HHHHHHHHHHHCTT-CEEEEEECCCTTC------CCHHHHHHHHHHTCCSEEEE-CCCTTHHHHHHHHHHHHTSSTT--C
T ss_pred HHHHHHHHHHhCCC-cEEEeeecCCCCC------cCHHHHHHHHHhCCCCEEEE-cCccHHHHHHHHHHHHcCCCCC--C
Confidence 99999999998 8 8988777666533 58999999999999999999 9899999999999999999654 3
Q ss_pred EEEeccc--hhhcccCChhHHhhcCceEEEEe-ecCCCChhHHHHHHHHHHHhhccCCCCCCCCCCchhhHHhHHHHHHH
Q 008863 264 WIVTNTV--ANALDSLNTTVISSMEGTLGIKS-YYSDDSSPYKEFSALFRRNFTSEYPEEDHFHPSIHALRAHDSIKIIT 340 (550)
Q Consensus 264 ~i~~~~~--~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~yDav~~~a 340 (550)
++.+..+ ...+... .....+|.+.... +....+|..++|.++|+++| +..|+.+++.+|||+++++
T Consensus 229 ~i~~~~~~~~~~~~~~---~~~~~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~--------~~~p~~~~~~~Yda~~~~a 297 (387)
T 3i45_A 229 QVVSMLTGEPEYLNPL---KDEAPEGWIVTGYPWYDIDTAPHRAFVEAYRARW--------KEDPFVGSLVGYNTLTAMA 297 (387)
T ss_dssp EEEEEEEESHHHHGGG---GGGCCSSCEEEECCGGGCCCHHHHHHHHHHHHHH--------SSCCCHHHHHHHHHHHHHH
T ss_pred eEEeecCCChHHHHHh---hhhccCceEEecccccCCCCHHHHHHHHHHHHHH--------CCCCCcHHHHHHHHHHHHH
Confidence 4433322 1111111 1134567665432 23345688999999999888 3467788999999999999
Q ss_pred HHHHhhccCCCCHHHHHHHHHhCcccccceeEEEeCCCCCCCCceEEEEee-CCeeeEEEEEeCCCCCcc
Q 008863 341 EAIGRLNYNISSPEMLLRQMLSSDFSGLSGKIRFKDGELLNADTLRIVNVV-GKKYKELDFWLPNFGFSK 409 (550)
Q Consensus 341 ~Al~~~~~~~~~~~~l~~~l~~~~~~G~tG~i~f~~~g~~~~~~~~i~~~~-~~~~~~vG~w~~~~g~~~ 409 (550)
+|+++++.. +++.++++|++++|+|++|+++|++.+++....+.|.+++ +++...++.|.+..+...
T Consensus 298 ~Al~~ag~~--~~~~v~~al~~~~~~g~~G~i~f~~~~~~~~~~~~i~~~~~~~g~~~i~~w~~~~~~~~ 365 (387)
T 3i45_A 298 VAFEKAGGT--ESETLVETLKDMAFSTPMGPLSFRASDHQSTMGAWVGRTALRDGKGVMVDWRYVDGGSV 365 (387)
T ss_dssp HHHHHHTSC--CHHHHHHHTTTCEEEETTEEEEBCTTTCBBCCCEEEEEEEEETTEEEEEEEEEECGGGG
T ss_pred HHHHHhCCC--CHHHHHHHHhcCCCcCCCCCeEEcCCCCccccceeEEEEEeeCCceeEEeeEEeCchhc
Confidence 999999875 9999999999999999999999997666666788888875 566788999997666543
No 18
>3h5l_A Putative branched-chain amino acid ABC transporter; structural genomics, PSI-2, protein structure initiative; 1.70A {Ruegeria pomeroyi}
Probab=100.00 E-value=1e-39 Score=329.88 Aligned_cols=337 Identities=10% Similarity=0.059 Sum_probs=280.5
Q ss_pred CcEEEEEEEecCC---ccchhHHHHHHHHHHHHhcCC--CCcEEEEEEecCC-CCHHHHHHHHHHhhhcCCeEEEEcCCC
Q 008863 33 EVTKIGAIVDANS---QMGKQAITAMKIAVQNFNSDS--RNHKLSLQIRDHN-RDPFQAATAAQELINKEKVKVIAGMET 106 (550)
Q Consensus 33 ~~i~IG~i~~~~~---~~g~~~~~a~~~Av~~iN~~~--~~~~l~~~~~d~~-~~~~~a~~~~~~li~~~~v~aiiG~~~ 106 (550)
++|+||+++|+++ ..|.....|+++|++++|+++ .|++|+++++|++ +++..+.+.+++|+.+++|.+||||.+
T Consensus 13 ~~i~IG~~~plsG~~a~~g~~~~~g~~lA~~~iN~~ggi~G~~i~l~~~D~~~~~~~~a~~~a~~li~~~~v~aiiG~~~ 92 (419)
T 3h5l_A 13 DPVVIGCPAPLTGIVAADGIEFQRGIQMAADEINAVGGILGRPIELVFADTQSKGVDVVIQSAQRLIDRDNASALIAGYN 92 (419)
T ss_dssp CCEEEEEEECCSSTTHHHHHHHHHHHHHHHHHHHTTTSBTTBCEEEEEEECTTCCHHHHHHHHHHHHHTTCCSEEECSCC
T ss_pred CCEEEEEeecCCCcccccCHHHHHHHHHHHHHHHhcCCcCceEEEEEEccCCCCCHHHHHHHHHHHhhhcCCeEEEcccc
Confidence 6899999999995 457889999999999999997 4899999999987 699999999999998889999999999
Q ss_pred hHHHHHHHHhhccCCccEEeccCCCCCCc-c-----cCCCCCeEEEEecCcHHhHHHHHHHHHHc--------CCeEEEE
Q 008863 107 WEETAVVAEIASRVQVPILSFAAPAVTPL-S-----MSRRWPYLIRMASNDSEQMKCIADLARKY--------NWRRVAA 172 (550)
Q Consensus 107 s~~~~~v~~~~~~~~iP~is~~~~~~~~~-~-----~~~~~~~~~~~~p~~~~~~~al~~~l~~~--------~w~~v~i 172 (550)
|..+.++++++...+||+|++++. +. . +...++|+||+.|++..++.+++++++++ +|++|++
T Consensus 93 s~~~~a~~~~~~~~~ip~i~~~~~---~~~~~~~~~~~~~~~~~f~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~vai 169 (419)
T 3h5l_A 93 LENGTALHDVAADAGVIAMHANTV---AVHDEMVKSDPDRYWGTFQYDPPETLYGGGFLKFLKDIEDNGEFSRPNNKIAI 169 (419)
T ss_dssp SSCSCHHHHHHHHHTCEEEECCCC---HHHHHHHHHCTTTCTTEEESSCCTHHHHHHHHHHHHHHHHTTSCCCSSSEEEE
T ss_pred chhHHHhHHHHHHcCCeEEEcCcc---hhhhhhhhcCcccCceEEEeCCchHHHHHHHHHHHHHHHhhccccCCCCEEEE
Confidence 999999999999999999997543 32 1 23468999999999999999999999876 8999999
Q ss_pred EEEcCCCCCcchhHHHHHHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcCCCeEEEEEcCC-HHHHHHHHHH
Q 008863 173 IYEDNVYGGDSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQAS-LDMTIHLFTE 251 (550)
Q Consensus 173 i~~~~~~g~~~~~~~~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~~ii~~~~~-~~~~~~il~~ 251 (550)
|+++++|| ....+.+++.+++.| ++|+....++... .|+..++++|++.++|+|++ .+. ++.+..++++
T Consensus 170 l~~~~~~g--~~~~~~~~~~~~~~g-~~vv~~~~~~~~~------~d~~~~l~~i~~~~~d~v~~-~~~~~~~~~~~~~~ 239 (419)
T 3h5l_A 170 ITGPGIYS--VNIANAIRDGAGEYG-YDVSLFETVAIPV------SDWGPTLAKLRADPPAVIVV-THFYPQDQALFMNQ 239 (419)
T ss_dssp EECSSHHH--HHHHHHHHHHGGGGT-CEEEEEEECCSSC------SCCHHHHHHHHHSCCSEEEE-CCCCHHHHHHHHHH
T ss_pred EEcCcchh--HHHHHHHHHHHHHcC-CeEEEEecCCCCC------ccHHHHHHHHHhcCCCEEEE-ccccCchHHHHHHH
Confidence 99999999 999999999999999 9999888777643 68999999999999999999 754 6789999999
Q ss_pred HHHcCCCCCCEEEEEeccchhhcccCChhHHhhcCceEEEEeecCCCChhHHHHHHHHHHHhhccCCCCCCCCCC-chhh
Q 008863 252 ANRMGLVGKDSVWIVTNTVANALDSLNTTVISSMEGTLGIKSYYSDDSSPYKEFSALFRRNFTSEYPEEDHFHPS-IHAL 330 (550)
Q Consensus 252 a~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~-~~~~ 330 (550)
+++.|+. ..|+.+..+... ++. .......+|.+....+....++..++|.++|+++|. ..+. .+++
T Consensus 240 ~~~~g~~---~~~~~~~~~~~~-~~~-~~~g~~~~G~~~~~~~~~~~~~~~~~f~~~~~~~~g--------~~p~~~~a~ 306 (419)
T 3h5l_A 240 FMTDPTN---SLVYLQYGASLA-AFR-DIAGDNSVGVTYATVLGTLQDEMGDAFAKAYKERYG--------DLSSTASGC 306 (419)
T ss_dssp HTTSCCS---CEEEECSGGGSH-HHH-HHHGGGGTTCEEEESSCCCSSHHHHHHHHHHHHHHC--------TTSCHHHHH
T ss_pred HHHcCCC---ceEEecCCCCcH-HHH-HhhhhhcCceEEeecCCCCCCHHHHHHHHHHHHHhC--------CCCCcchhH
Confidence 9999993 367776665421 111 112345678776654444455889999999999884 3443 5889
Q ss_pred HHhHHHHHHHHHHHhhccC-----CCCHHHHHHHHHhCcccccceeEEEeCCCCCC------------CCceEEEEeeCC
Q 008863 331 RAHDSIKIITEAIGRLNYN-----ISSPEMLLRQMLSSDFSGLSGKIRFKDGELLN------------ADTLRIVNVVGK 393 (550)
Q Consensus 331 ~~yDav~~~a~Al~~~~~~-----~~~~~~l~~~l~~~~~~G~tG~i~f~~~g~~~------------~~~~~i~~~~~~ 393 (550)
.+|||++++++|+.+++.+ +.++..++++|++++|.|++|+++|+++|++. ...+.|++++++
T Consensus 307 ~~Yda~~~~~~a~~~a~~~~~~g~~~~~~~l~~al~~~~~~g~~G~i~f~~~g~~~~~~~~~~~~~~~~~~~~i~q~q~g 386 (419)
T 3h5l_A 307 QTYSALYAYSIAAALAGGPGAPYDDVQNKAVADRLRSLIFRGPVGTMRFHADTQSAWSYPTETNDPSLGMPHIFSQIFDK 386 (419)
T ss_dssp HHHHHHHHHHHHHHHTTSCCCTTCHHHHHHHHHHHHHCEEEETTEEEEBCTTTCBBCEETTTCSCTTSSEECEEEECCCT
T ss_pred HHHHHHHHHHHHHHHhcCCccCCCccCHHHHHHHHHhCCcccCceEEEECCCCCccccccCccCCccccCCceEEEeeCC
Confidence 9999999999999988752 13678999999999999999999999988853 123557888877
Q ss_pred ee
Q 008863 394 KY 395 (550)
Q Consensus 394 ~~ 395 (550)
++
T Consensus 387 ~~ 388 (419)
T 3h5l_A 387 AE 388 (419)
T ss_dssp TS
T ss_pred ce
Confidence 77
No 19
>3td9_A Branched chain amino acid ABC transporter, peripl amino acid-binding protein; leucine binding, structural genomics; HET: MSE PHE; 1.90A {Thermotoga maritima}
Probab=100.00 E-value=2.2e-38 Score=314.44 Aligned_cols=342 Identities=18% Similarity=0.244 Sum_probs=291.9
Q ss_pred CCcEEEEEEEecCC---ccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEcCCChH
Q 008863 32 EEVTKIGAIVDANS---QMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWE 108 (550)
Q Consensus 32 ~~~i~IG~i~~~~~---~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~ 108 (550)
+.+++||+++|+++ ..|.....|+++|++++|+ -.|++++++++|+++++..+.+.+++++.+++|.+||||.++.
T Consensus 14 ~~~~~iG~~~plsG~~a~~g~~~~~g~~~a~~~in~-i~G~~i~l~~~D~~~~~~~~~~~~~~l~~~~~v~~iiG~~~s~ 92 (366)
T 3td9_A 14 RKVVKIAVILPMTGGISAFGRMVWEGIQIAHEEKPT-VLGEEVELVLLDTRSEKTEAANAAARAIDKEKVLAIIGEVASA 92 (366)
T ss_dssp --CEEEEEEECCSSTTHHHHHHHHHHHHHHHHHCCE-ETTEEEEEEEEECTTCHHHHHHHHHHHHHTSCCSEEEECSSHH
T ss_pred cceEEEEEEECCcCcchhcCHHHHHHHHHHHHHhhh-cCCeEEEEEEecCCCCHHHHHHHHHHHhccCCeEEEEccCCch
Confidence 46899999999994 4678899999999999997 4589999999999999999999999999876799999999999
Q ss_pred HHHHHHHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHH-HHcCCeEEEEEEE-cCCCCCcchhH
Q 008863 109 ETAVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLA-RKYNWRRVAAIYE-DNVYGGDSGKL 186 (550)
Q Consensus 109 ~~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l-~~~~w~~v~ii~~-~~~~g~~~~~~ 186 (550)
.+.++++++...++|+|++.++ ++.... .+|++||+.|++..++.++++++ +++||+++++||. +++|+ ....
T Consensus 93 ~~~~~~~~~~~~~iP~i~~~~~--~~~~~~-~~~~~f~~~~~~~~~~~~~~~~l~~~~g~~~iaii~~~~~~~~--~~~~ 167 (366)
T 3td9_A 93 HSLAIAPIAEENKVPMVTPAST--NPLVTQ-GRKFVSRVCFIDPFQGAAMAVFAYKNLGAKRVVVFTDVEQDYS--VGLS 167 (366)
T ss_dssp HHHHHHHHHHHTTCCEEESSCC--CGGGTT-TCSSEEESSCCHHHHHHHHHHHHHHTSCCCEEEEEEETTCHHH--HHHH
T ss_pred hHHHHHHHHHhCCCeEEecCCC--CccccC-CCCCEEEEeCCcHHHHHHHHHHHHHhcCCcEEEEEEeCCCcHH--HHHH
Confidence 9999999999999999999887 555433 56999999999999999999999 5689999999997 56788 8888
Q ss_pred HHHHHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcCCCeEEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEE
Q 008863 187 ALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGLVGKDSVWIV 266 (550)
Q Consensus 187 ~~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~~ii~~~~~~~~~~~il~~a~~~g~~~~~~~~i~ 266 (550)
+.+++.+++.| +++.... ++... .|+...++++++.++++|++ .+....+..+++++++.|+.. .|+.
T Consensus 168 ~~~~~~~~~~G-~~v~~~~-~~~~~------~d~~~~~~~l~~~~~d~v~~-~~~~~~a~~~~~~~~~~g~~~---~~~~ 235 (366)
T 3td9_A 168 NFFINKFTELG-GQVKRVF-FRSGD------QDFSAQLSVAMSFNPDAIYI-TGYYPEIALISRQARQLGFTG---YILA 235 (366)
T ss_dssp HHHHHHHHHTT-CEEEEEE-ECTTC------CCCHHHHHHHHHTCCSEEEE-CSCHHHHHHHHHHHHHTTCCS---EEEE
T ss_pred HHHHHHHHHCC-CEEEEEE-eCCCC------ccHHHHHHHHHhcCCCEEEE-ccchhHHHHHHHHHHHcCCCc---eEEe
Confidence 99999999999 9998777 66533 57888999999999999999 999999999999999999965 5676
Q ss_pred eccchhhcccCChhHHhhcCceEEEEeecCCC--ChhHHHHHHHHHHHhhccCCCCCCCCCCchhhHHhHHHHHHHHHHH
Q 008863 267 TNTVANALDSLNTTVISSMEGTLGIKSYYSDD--SSPYKEFSALFRRNFTSEYPEEDHFHPSIHALRAHDSIKIITEAIG 344 (550)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~yDav~~~a~Al~ 344 (550)
++.+... .. ........+|.+....+.+.. .+..++|.++|+++| +..|+.+++.+|||++++++|++
T Consensus 236 ~~~~~~~-~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~~~~~~--------g~~p~~~~~~~yda~~~~~~al~ 305 (366)
T 3td9_A 236 GDGADAP-EL-IEIGGEAVEGLLFTTHYHPKAASNPVAKKFVEVYKEKY--------GKEPAALNALGYDAYMVLLDAIE 305 (366)
T ss_dssp CGGGCST-HH-HHHHGGGGTTCEEEESCCGGGCCSHHHHHHHHHHHHHH--------SSCCCHHHHHHHHHHHHHHHHHH
T ss_pred eCCcCCH-HH-HHHHhHHhCCeEEEEeeCCCCCCCHHHHHHHHHHHHHH--------CCCCchhHHHHHHHHHHHHHHHH
Confidence 6655421 11 111234577888776654332 578999999999888 44578899999999999999999
Q ss_pred hhccCCCCHHHHHHHHHhCc-ccccceeEEEeCCCCCCCCceEEEEeeCCeeeEEEEEeCC
Q 008863 345 RLNYNISSPEMLLRQMLSSD-FSGLSGKIRFKDGELLNADTLRIVNVVGKKYKELDFWLPN 404 (550)
Q Consensus 345 ~~~~~~~~~~~l~~~l~~~~-~~G~tG~i~f~~~g~~~~~~~~i~~~~~~~~~~vG~w~~~ 404 (550)
+++.. +++.++++|++++ |+|++|+++|+++|++. ..+.|+++++++|+.|+.|++.
T Consensus 306 ~ag~~--~~~~~~~~l~~~~~~~g~~G~i~f~~~g~~~-~~~~i~~~~~g~~~~v~~~~~~ 363 (366)
T 3td9_A 306 RAGSF--DREKIAEEIRKTRNFNGASGIINIDENGDAI-KSVVVNIVKNGSVDFEAVINPD 363 (366)
T ss_dssp HHTSC--CHHHHHHHHTTCCSEEETTEEECBCTTSCBC-CCEEEEEEETTEEEEEEEECGG
T ss_pred HhCCC--CHHHHHHHHHhCCCCcccceeeEECCCCCcc-CceEEEEEECCEEEEEEecChh
Confidence 99875 9999999999997 99999999999989886 5699999999999999999863
No 20
>4f06_A Extracellular ligand-binding receptor; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: MSE PHB; 1.30A {Rhodopseudomonas palustris} PDB: 4evs_A*
Probab=100.00 E-value=1.7e-38 Score=315.27 Aligned_cols=342 Identities=18% Similarity=0.225 Sum_probs=284.9
Q ss_pred CcEEEEEEEecCC---ccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCC-CHHHHHHHHHHhhhcCCeEEEEcCCChH
Q 008863 33 EVTKIGAIVDANS---QMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNR-DPFQAATAAQELINKEKVKVIAGMETWE 108 (550)
Q Consensus 33 ~~i~IG~i~~~~~---~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~-~~~~a~~~~~~li~~~~v~aiiG~~~s~ 108 (550)
++||||+++|+|+ ..|.....|+++|++++|..-.|++|+++++|+++ +|..+...+.+|+.+++|.+|+||.+|.
T Consensus 4 d~IkIG~~~plSG~~a~~G~~~~~g~~la~~~~nggi~G~~ielv~~D~~~~~p~~a~~~a~~Li~~d~V~aiiG~~~S~ 83 (371)
T 4f06_A 4 DTIKVGVIGTMSGPYALFGKNYKMGIDAWVAEHGNKVAGHTVEFVYRDEVSPNPAQSKALAQELIVKEKVQYLAGLYFTP 83 (371)
T ss_dssp CEEEEEEEECCSSTTHHHHHHHHHHHHHHHHHHCSEETTEEEEEEEEECCSSCHHHHHHHHHHHHHTSCCSEEEECCSHH
T ss_pred CcEEEEEEeCCcCchHHhHHHHHHHHHHHHHHhCCCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHhcCCCEEEEeccccc
Confidence 6899999999993 56788999999999999932278999999999875 8999999999999988999999999999
Q ss_pred HHHHHHHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHHcCCeEEEEEEEcCCCCCcchhHHH
Q 008863 109 ETAVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLAL 188 (550)
Q Consensus 109 ~~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~~~w~~v~ii~~~~~~g~~~~~~~~ 188 (550)
.+.+++++++..++|+|+++++ ++.... ..||+||+.|++..++.+++++++..+|+++++|+++++|| ....+.
T Consensus 84 ~~~a~~~~~~~~~vp~i~~~a~--~~~~~~-~~~~~fr~~~~~~~~~~~~~~~~~~~g~k~vaii~~~~~~g--~~~~~~ 158 (371)
T 4f06_A 84 NAMAVAPLLQEAKVPMVVMNAA--TSSITE-KSPYIVRTSFTMFQNTVPAAKVAKQKGATKVAIAVSDYGPG--IDAETA 158 (371)
T ss_dssp HHHHHGGGHHHHTCCEEESSCC--CGGGGG-GCTTEEESSCCHHHHHHHHHHHHHHTTCCEEEEEEESSHHH--HHHHHH
T ss_pred chHHHHHHHHhhcCCccccccc--cchhcc-cCCcceecccchhhhhhhhhhhhhhcCceEEEEEcCCcccc--hhHHHH
Confidence 9999999999999999999988 666543 34899999999999999999999999999999999999999 999999
Q ss_pred HHHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcCCCeEEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEEec
Q 008863 189 LAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGLVGKDSVWIVTN 268 (550)
Q Consensus 189 l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~~ii~~~~~~~~~~~il~~a~~~g~~~~~~~~i~~~ 268 (550)
+++.+++.| ++++....++... .|+..++.+|++.++|+|++..........+++++.+.|+....+.++...
T Consensus 159 ~~~~~~~~g-~~vv~~~~~~~~~------~d~~~~l~~i~~~~pd~v~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 231 (371)
T 4f06_A 159 FKKTFEAEG-GKVVEAVRMPLST------TDFGPIMQRIKNSGADMIFTFLPAGPPTLGFVKAYIDNGLKAGGVKLMSTG 231 (371)
T ss_dssp HHHHHHHTT-CEEEEEEEECTTC------CCCHHHHHHHHHHTCSEEEEECCTTHHHHHHHHHHHHTTTTTTTCEEEEEG
T ss_pred HHHHHHhcC-CceEEEEecCccc------ccHHHHHHHHHhcCCCEEEEEeccCchhhHHHHHHHHhhhhccCcEEEEec
Confidence 999999999 9999998888754 789999999999999999872445578888999999999987666666655
Q ss_pred cchhhcccCChhHHhhcCceEEEEeecC-CCChhHHHHHHHHHHHhhccCCCCCCCCCCchhhHHhHHHHHHHHHHHhh-
Q 008863 269 TVANALDSLNTTVISSMEGTLGIKSYYS-DDSSPYKEFSALFRRNFTSEYPEEDHFHPSIHALRAHDSIKIITEAIGRL- 346 (550)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~yDav~~~a~Al~~~- 346 (550)
.......+ ........|++....+.. ..+|..++|.+.|++.|.. ...++.+++.+||+++++++|+++.
T Consensus 232 ~~~~~~~~--~~~~~~~~g~~~~~~~~~~~~~p~~~~f~~~~~~~~~~------~~~~~~~a~~~Yda~~~l~~Ai~~~a 303 (371)
T 4f06_A 232 DVVTEPDL--PNIGEAGLGILSTYHYAVSHDSPENKAFLALLQKGGAK------LDEVTMTSVAAYDGARLIYKMIEATS 303 (371)
T ss_dssp GGGCGGGH--HHHCGGGTTCEEEESCCTTCCSHHHHHHHHHHHHTTCC------GGGCCHHHHHHHHHHHHHHHHHHHTT
T ss_pred ccCCHHHH--HhcccccCceEEeeccccCCCChhHHHHHHHHHHhcCC------CCCccchHHHHHHHHHHHHHHHHHhc
Confidence 43322111 122345667776665543 3458888999988887642 2346778999999999999999865
Q ss_pred ccCCCCHHHHHHHHHhCcccccceeEEEeCCCCCCCCceEEEEee--CCeee
Q 008863 347 NYNISSPEMLLRQMLSSDFSGLSGKIRFKDGELLNADTLRIVNVV--GKKYK 396 (550)
Q Consensus 347 ~~~~~~~~~l~~~l~~~~~~G~tG~i~f~~~g~~~~~~~~i~~~~--~~~~~ 396 (550)
++. +++.++++|++++|.|++|+++||.+++.....+.|.+++ +++++
T Consensus 304 g~~--d~~~v~~al~~~~~~~~~G~i~fd~~~~~~~~~~~i~~v~~~dGk~v 353 (371)
T 4f06_A 304 GKS--DPDKAIAAVKGMKWVSPRGEVSIDPETRHITQNVYLREVEKVDGKLI 353 (371)
T ss_dssp TSC--CHHHHHHHHTTCEEEETTEEEEECTTTCBEEEEEEEEEEEEETTEEE
T ss_pred CCC--CHHHHHHHHhCCCeeCCcEEEEEcCCCCcccCCEEEEEEEecCCEEE
Confidence 444 8999999999999999999999998777655677788876 66654
No 21
>3ipc_A ABC transporter, substrate binding protein (amino; venus flytrap domain, transport protein; 1.30A {Agrobacterium tumefaciens} PDB: 3ip5_A 3ip6_A 3ip7_A 3ip9_A 3ipa_A
Probab=100.00 E-value=3.2e-38 Score=312.08 Aligned_cols=341 Identities=15% Similarity=0.151 Sum_probs=290.4
Q ss_pred cEEEEEEEecCC---ccchhHHHHHHHHHHHHhcCC--CCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEcCCChH
Q 008863 34 VTKIGAIVDANS---QMGKQAITAMKIAVQNFNSDS--RNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWE 108 (550)
Q Consensus 34 ~i~IG~i~~~~~---~~g~~~~~a~~~Av~~iN~~~--~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~ 108 (550)
+|+||+++|+++ ..|.....|+++|++++|+++ +|++++++++|+++++..+.+.+++++. ++|.+||||.++.
T Consensus 2 ~i~IG~~~p~sg~~~~~g~~~~~g~~~a~~~iN~~ggi~G~~~~l~~~d~~~~~~~~~~~~~~l~~-~~v~~iig~~~s~ 80 (356)
T 3ipc_A 2 DVVIAVGAPLTGPNAAFGAQIQKGAEQAAKDINAAGGINGEQIKIVLGDDVSDPKQGISVANKFVA-DGVKFVVGHANSG 80 (356)
T ss_dssp CEEEEEEECCSSTTHHHHHHHHHHHHHHHHHHHHTTCBTTBCEEEEEEECTTCHHHHHHHHHHHHH-TTCCEEEECSSHH
T ss_pred eEEEEEeeCCCCcchhhCHHHHHHHHHHHHHHHhcCCCCCeEEEEEEecCCCCHHHHHHHHHHHHH-CCCcEEEcCCCcH
Confidence 799999999984 467789999999999999997 5899999999999999999999999998 7999999999999
Q ss_pred HHHHHHHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHH-HHcCCeEEEEEEEcCCCCCcchhHH
Q 008863 109 ETAVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLA-RKYNWRRVAAIYEDNVYGGDSGKLA 187 (550)
Q Consensus 109 ~~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l-~~~~w~~v~ii~~~~~~g~~~~~~~ 187 (550)
.+.++++++...++|+|++.++ ++......+|++||+.|++..++.++++++ +++||+++++|++++++| ....+
T Consensus 81 ~~~~~~~~~~~~~ip~v~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~iaii~~~~~~~--~~~~~ 156 (356)
T 3ipc_A 81 VSIPASEVYAENGILEITPAAT--NPVFTERGLWNTFRTCGRDDQQGGIAGKYLADHFKDAKVAIIHDKTPYG--QGLAD 156 (356)
T ss_dssp HHHHHHHHHHTTTCEEEESSCC--CGGGGSSCCTTEEESSCCHHHHHHHHHHHHHHHCTTCCEEEEECSSHHH--HHHHH
T ss_pred HHHHHHHHHHhCCCeEEecCCC--CcHhhcCCCCcEEEecCChHHHHHHHHHHHHHhcCCCEEEEEeCCChHH--HHHHH
Confidence 9999999999999999999888 666555667999999999999999999977 557999999999988888 88999
Q ss_pred HHHHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcCCCeEEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEEe
Q 008863 188 LLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGLVGKDSVWIVT 267 (550)
Q Consensus 188 ~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~~ii~~~~~~~~~~~il~~a~~~g~~~~~~~~i~~ 267 (550)
.+++.+++.| +++.....++.. ..++...++++++.++++|++ ++....+..+++++++.|+.. .|+.+
T Consensus 157 ~~~~~l~~~g-~~v~~~~~~~~~------~~d~~~~~~~l~~~~~d~v~~-~~~~~~a~~~~~~~~~~g~~~---~~~~~ 225 (356)
T 3ipc_A 157 ETKKAANAAG-VTEVMYEGVNVG------DKDFSALISKMKEAGVSIIYW-GGLHTEAGLIIRQAADQGLKA---KLVSG 225 (356)
T ss_dssp HHHHHHHHTT-CCCSEEEECCTT------CCCCHHHHHHHHHTTCCEEEE-ESCHHHHHHHHHHHHHHTCCC---EEEEC
T ss_pred HHHHHHHHcC-CEEEEEEeeCCC------CCCHHHHHHHHHhcCCCEEEE-ccCchHHHHHHHHHHHCCCCC---cEEEe
Confidence 9999999999 988776666553 257888999999999999999 999999999999999999975 56766
Q ss_pred ccchhhcccCChhHHhhcCceEEEEeecCCCChhHHHHHHHHHHHhhccCCCCCCCCCCchhhHHhHHHHHHHHHHHhhc
Q 008863 268 NTVANALDSLNTTVISSMEGTLGIKSYYSDDSSPYKEFSALFRRNFTSEYPEEDHFHPSIHALRAHDSIKIITEAIGRLN 347 (550)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~yDav~~~a~Al~~~~ 347 (550)
+.+... ... .......+|.+....+.+...|..++|.++|+++ . ..|+.+++.+|||++++++|+++++
T Consensus 226 ~~~~~~-~~~-~~~g~~~~g~~~~~~~~~~~~~~~~~f~~~~~~~-~--------~~p~~~~~~~yda~~~~~~al~~ag 294 (356)
T 3ipc_A 226 DGIVSN-ELA-SIAGDAVEGTLNTFGPDPTLRPENKELVEKFKAA-G--------FNPEAYTLYSYAAMQAIAGAAKAAG 294 (356)
T ss_dssp GGGCSH-HHH-HHHGGGGTTCEEEESCCGGGCGGGHHHHHHHHHT-T--------CCCCTTHHHHHHHHHHHHHHHHHHT
T ss_pred ccccCH-HHH-HHhhHHhCCEEEEecCCCCCChhHHHHHHHHHHc-C--------CCcchhHHHHHHHHHHHHHHHHHhC
Confidence 554321 110 1122456787776665544558889998888876 2 2466789999999999999999998
Q ss_pred cCCCCHHHHHHHHHhCcccccceeEEEeCCCCCCCCceEEEEeeC---CeeeEEEEEeC
Q 008863 348 YNISSPEMLLRQMLSSDFSGLSGKIRFKDGELLNADTLRIVNVVG---KKYKELDFWLP 403 (550)
Q Consensus 348 ~~~~~~~~l~~~l~~~~~~G~tG~i~f~~~g~~~~~~~~i~~~~~---~~~~~vG~w~~ 403 (550)
.. +++.++++|++.+|+|++|+++|+++|++....+.|+++++ ++|+.+..|.+
T Consensus 295 ~~--~~~~~~~~l~~~~~~g~~G~~~f~~~g~~~~~~~~i~~~~~~~~G~~~~~~~~~~ 351 (356)
T 3ipc_A 295 SV--EPEKVAEALKKGSFPTALGEISFDEKGDPKLPGYVMYEWKKGPDGKFTYIQQGSH 351 (356)
T ss_dssp CC--CHHHHHHHHTTCCBCCTTSSBCBCTTSCBCCCCCEEEEEEECTTSSEEEEEC---
T ss_pred CC--CHHHHHHHHHhCCCCCcceeeEECCCCCccCCCeEEEEEEECCCCcEEEEecccc
Confidence 75 99999999999999999999999999999878999999994 99999998875
No 22
>3i09_A Periplasmic branched-chain amino acid-binding Pro; type I periplasmic binding protein, structural genomics, JOI for structural genomics; HET: MSE CIT; 1.80A {Burkholderia mallei}
Probab=100.00 E-value=1.3e-37 Score=309.90 Aligned_cols=335 Identities=14% Similarity=0.196 Sum_probs=286.2
Q ss_pred CcEEEEEEEecCC---cc-chhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEcCCChH
Q 008863 33 EVTKIGAIVDANS---QM-GKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWE 108 (550)
Q Consensus 33 ~~i~IG~i~~~~~---~~-g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~ 108 (550)
++|+||+++|+++ .. |.....|+++|++++|..-.|++++++++|+++++..+.+.+++|+.+++|.+||||.++.
T Consensus 3 ~~i~IG~~~p~sg~~a~~~g~~~~~g~~~A~~~~~ggi~G~~i~l~~~D~~~~~~~a~~~~~~li~~~~v~~iiG~~~s~ 82 (375)
T 3i09_A 3 DSVKIGFITDMSGLYADIDGQGGLEAIKMAVADFGGKVNGKPIEVVYADHQNKADIAASKAREWMDRGGLDLLVGGTNSA 82 (375)
T ss_dssp SSEEEEEEECSSSTTTTTSHHHHHHHHHHHHHHHTSEETTEEEEEEEEECTTCHHHHHHHHHHHHHHSCEEEEEECSCHH
T ss_pred CCeEEEEEeCCCcccccccCHHHHHHHHHHHHHhCCCCCCeEEEEEEecCCCCHHHHHHHHHHHHhhCCCEEEECCCCcH
Confidence 5899999999984 33 7789999999999994211689999999999999999999999999878999999999999
Q ss_pred HHHHHHHhhccCCccEEeccCCCCCCccc-CCCCCeEEEEecCcHHhHHHHHHHHHHcCCeEEEEEEEcCCCCCcchhHH
Q 008863 109 ETAVVAEIASRVQVPILSFAAPAVTPLSM-SRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLA 187 (550)
Q Consensus 109 ~~~~v~~~~~~~~iP~is~~~~~~~~~~~-~~~~~~~~~~~p~~~~~~~al~~~l~~~~w~~v~ii~~~~~~g~~~~~~~ 187 (550)
.+.++++++...++|+|+++++ ++... ...+||+||+.|++..++.++++++.+++|+++++|++++++| ....+
T Consensus 83 ~~~a~~~~~~~~~ip~i~~~~~--~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~~g~~~vaii~~~~~~g--~~~~~ 158 (375)
T 3i09_A 83 TALSMNQVAAEKKKVYINIGAG--ADTLTNEQCTPYTVHYAYDTMALAKGTGSAVVKQGGKTWFFLTADYAFG--KALEK 158 (375)
T ss_dssp HHHHHHHHHHHHTCEEEECSCC--CGGGGTTTCCTTEEECSCCHHHHHHHHHHHHHHTTCCEEEEEEESSHHH--HHHHH
T ss_pred HHHHHHHHHHHcCceEEEeCCC--chhhhcccCCCcEEEeeCChHHHHHHHHHHHHHcCCceEEEEecccHHH--HHHHH
Confidence 9999999999999999999887 56643 4568999999999999999999999999999999999999999 99999
Q ss_pred HHHHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcCCCeEEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEEe
Q 008863 188 LLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGLVGKDSVWIVT 267 (550)
Q Consensus 188 ~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~~ii~~~~~~~~~~~il~~a~~~g~~~~~~~~i~~ 267 (550)
.+++.+++.| ++++....++... .|+...++++++.++++|++ .+....+..++++++++|+..+. .++..
T Consensus 159 ~~~~~~~~~G-~~v~~~~~~~~~~------~d~~~~l~~i~~~~~d~v~~-~~~~~~~~~~~~~~~~~g~~~~~-~i~g~ 229 (375)
T 3i09_A 159 NTADVVKANG-GKVLGEVRHPLSA------SDFSSFLLQAQSSKAQILGL-ANAGGDTVNAIKAAKEFGITKTM-KLAAL 229 (375)
T ss_dssp HHHHHHHHTT-CEEEEEEEECTTC------SCCHHHHHHHHHTCCSEEEE-ECCHHHHHHHHHHHHHTTGGGTC-EEEES
T ss_pred HHHHHHHHcC-CEEeeeeeCCCCC------ccHHHHHHHHHhCCCCEEEE-ecCchhHHHHHHHHHHcCCCcCc-eEEec
Confidence 9999999999 9998877776543 57889999999999999999 99999999999999999998875 44444
Q ss_pred ccchhhcccCChhHHhhcCceEEEEeecCCCChhHHHHHHHHHHHhhccCCCCCCCCCCchhhHHhHHHHHHHHHHHhhc
Q 008863 268 NTVANALDSLNTTVISSMEGTLGIKSYYSDDSSPYKEFSALFRRNFTSEYPEEDHFHPSIHALRAHDSIKIITEAIGRLN 347 (550)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~yDav~~~a~Al~~~~ 347 (550)
+.+...+... ..+..+|++....+....+|..++|.++|+++| +..|+.+++.+|||++++++|+++++
T Consensus 230 ~~~~~~~~~~---~~~~~~g~~~~~~~~~~~~~~~~~f~~~~~~~~--------g~~p~~~a~~~Yda~~~~~~Al~~ag 298 (375)
T 3i09_A 230 LMFINDVHAL---GLETTQGLVLTDSWYWNRDQASRQWAQRYFAKM--------KKMPSSLQAADYSSVTTYLKAVQAAG 298 (375)
T ss_dssp SCCHHHHHHH---CHHHHTTCEEEESCCTTSSHHHHHHHHHHHHHH--------SSCCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred ccchhhHhhh---ChhhhCCeeeeeeecCCCCHHHHHHHHHHHHHH--------CCCCcHHHHHHHHHHHHHHHHHHHhC
Confidence 4443221111 124567887776665554688999999999888 44678899999999999999999998
Q ss_pred cCCCCHHHHHHHHHhCcccccceeEEEeCCCCCCCCceEEEEeeCCe
Q 008863 348 YNISSPEMLLRQMLSSDFSGLSGKIRFKDGELLNADTLRIVNVVGKK 394 (550)
Q Consensus 348 ~~~~~~~~l~~~l~~~~~~G~tG~i~f~~~g~~~~~~~~i~~~~~~~ 394 (550)
.. +++.|+++|++++|.|++|.++|+++|++. ..+.|+++++++
T Consensus 299 ~~--~~~~l~~aL~~~~~~~~~G~~~f~~~g~~~-~~~~i~~v~~~~ 342 (375)
T 3i09_A 299 ST--DSDKVMAQLKKMKIDDFYAKGYIRTDGSMI-HDMYLMEVKKPS 342 (375)
T ss_dssp SC--CHHHHHHHHTTSCEESSSCEEEECTTSBEE-CCEEEEEECCGG
T ss_pred CC--CHHHHHHHHhCCCccCCCCceEECCCCCee-eeeEEEEEeccc
Confidence 76 999999999999999999999999988885 678899997643
No 23
>4gnr_A ABC transporter substrate-binding protein-branche amino acid transport; amino acid-binding protein, surface-exposed protein; HET: MLY; 1.00A {Streptococcus pneumoniae}
Probab=100.00 E-value=2.4e-37 Score=305.25 Aligned_cols=337 Identities=19% Similarity=0.254 Sum_probs=274.5
Q ss_pred CCCcEEEEEEEecCC---ccchhHHHHHHHHHHHHhcCC--CCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEcCC
Q 008863 31 IEEVTKIGAIVDANS---QMGKQAITAMKIAVQNFNSDS--RNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGME 105 (550)
Q Consensus 31 ~~~~i~IG~i~~~~~---~~g~~~~~a~~~Av~~iN~~~--~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG~~ 105 (550)
++++||||+++|+|+ ..|....+|+++|+++||+.| .|++|+++++|++++|..+.+.+.+|+.++++.+|+||.
T Consensus 4 ~~~tIkIG~~~plsG~~a~~G~~~~~g~~lAv~~iN~~GGi~Gr~ielv~~D~~~~p~~a~~~a~~li~~~~v~~i~g~~ 83 (353)
T 4gnr_A 4 EEKTIKIGFNFEESGSLAAYGTAEQKGAQLAVDEINAAGGIDGKQIEVVDKDNKSETAEAASVTTNLVTQSKVSAVVGPA 83 (353)
T ss_dssp --CEEEEEEEECCSSTTHHHHHHHHHHHHHHHHHHHHTTCBTTBEEEEEEEECTTCHHHHHHHHHHHHHTSCCSEEECCC
T ss_pred CCCeEEEEEEeCCcCchhHhHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEecCCCCHHHHHHHHHHHHhhCCceEEeccc
Confidence 457999999999993 567889999999999999998 589999999999999999999999999988999999999
Q ss_pred ChHHHHHHHHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHHc-CCeEEEEEEEcC-CCCCcc
Q 008863 106 TWEETAVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKY-NWRRVAAIYEDN-VYGGDS 183 (550)
Q Consensus 106 ~s~~~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~~-~w~~v~ii~~~~-~~g~~~ 183 (550)
+|..+.++++++...++|+|+++++ ++.+.. .++|+||+.|++..+..+++.++... ++++++++++++ +|| .
T Consensus 84 ~s~~~~a~~~~~~~~~vp~i~~~~~--~~~l~~-~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yg--~ 158 (353)
T 4gnr_A 84 TSGATAAAVANATKAGVPLISPSAT--QDGLTK-GQDYLFIGTFQDSFQGKIISNYVSEKLNAKKVVLYTDNASDYA--K 158 (353)
T ss_dssp SHHHHHHHHHHHHHTTCCEEESSCC--CTTTTT-TCTTEEECSCCHHHHHHHHHHHHHHTSCCSEEEEEEETTCHHH--H
T ss_pred cCcccceehhhhhccCcceEeeccc--cccccc-CCccccccCCCcHHHHHHHHHHHHHhcCCcEEEEEEcCchHHH--H
Confidence 9999999999999999999999888 565543 45889999999999999999999765 555666666553 477 6
Q ss_pred hhHHHHHHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcCCCeEEEEEcCCHHHHHHHHHHHHHcCCCCCCEE
Q 008863 184 GKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGLVGKDSV 263 (550)
Q Consensus 184 ~~~~~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~~ii~~~~~~~~~~~il~~a~~~g~~~~~~~ 263 (550)
...+.+.+ ..| .+++....++... .|+..++.++++.++|+|++ .+...++..++++++++|+..+
T Consensus 159 ~~~~~~~~---~~g-~~vv~~~~~~~~~------~d~~~~l~~i~~~~~d~v~~-~~~~~~~~~~~~~~~~~g~~~~--- 224 (353)
T 4gnr_A 159 GIAKSFRE---SYK-GEIVADETFVAGD------TDFQAALTKMKGKDFDAIVV-PGYYNEAGKIVNQARGMGIDKP--- 224 (353)
T ss_dssp HHHHHHHH---HCC-SEEEEEEEECTTC------CCCHHHHHHHHTSCCSEEEC-CSCHHHHHHHHHHHHHTTCCSC---
T ss_pred HHHHHHHH---HcC-CEEEEEEeeCCCC------CCHHHHHHHHHhcCCCEEEE-ecCcHHHHHHHHHHHHcCCCCc---
Confidence 66555544 446 7888888887744 68999999999999999999 9999999999999999999763
Q ss_pred EEEeccchhhcccCChhHHhhcCceEEEEeecC--CCChhHHHHHHHHHHHhhccCCCCCCCCCCchhhHHhHHHHHHHH
Q 008863 264 WIVTNTVANALDSLNTTVISSMEGTLGIKSYYS--DDSSPYKEFSALFRRNFTSEYPEEDHFHPSIHALRAHDSIKIITE 341 (550)
Q Consensus 264 ~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~yDav~~~a~ 341 (550)
|+....+... ...........+|.+....+.. +.++..++|.++|+++| +..|+.+++++|||++++++
T Consensus 225 ~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~~~~~~--------g~~p~~~a~~~Yda~~~la~ 295 (353)
T 4gnr_A 225 IVGGDGFNGE-EFVQQATAEKASNIYFISGFSTTVEVSAKAKAFLDAYRAKY--------NEEPSTFAALAYDSVHLVAN 295 (353)
T ss_dssp EEECGGGCSH-HHHHHHCTTTCCSEEEEESCCSSSSCCHHHHHHHHHHHHHH--------SSCCCHHHHHHHHHHHHHHH
T ss_pred EEEecccccc-hhhhhhhhhhhcCccccccccCCCCCCHHHHHHHHHHHHHh--------CCCCChhHHHHHHHHHHHHH
Confidence 4554443321 1000111234566666654433 23478889999999988 45678899999999999999
Q ss_pred HHHhhccCCCCHHHHHHHHHhC-cccccceeEEEeCCCCCCCCceEEEEeeCCeeeEEEE
Q 008863 342 AIGRLNYNISSPEMLLRQMLSS-DFSGLSGKIRFKDGELLNADTLRIVNVVGKKYKELDF 400 (550)
Q Consensus 342 Al~~~~~~~~~~~~l~~~l~~~-~~~G~tG~i~f~~~g~~~~~~~~i~~~~~~~~~~vG~ 400 (550)
|++++. ++..++++|+.+ +|+|++|+++||++|++. ..+.++++++++|+.+..
T Consensus 296 Ai~~a~----~~~~v~~aL~~~~~~~g~~G~i~f~~~g~~~-~~~~i~~v~~Gk~~~~~~ 350 (353)
T 4gnr_A 296 AAKGAK----NSGEIKDNLAXTKDFEGVTGQTSFDADHNTV-KTAYMMTMNNGKVEAAEV 350 (353)
T ss_dssp HHTTCS----SHHHHHHHHHTCCCEEETTEEECCCTTSCCC-CCEEEEEEETTEEEEEEE
T ss_pred HHhcCC----CHHHHHHHHHhcCCCccCceeEEECCCcCCc-CCeEEEEEECCEEEEEEE
Confidence 998653 788999999987 699999999999998885 678899999999887754
No 24
>3n0w_A ABC branched chain amino acid family transporter, periplasmic ligand binding protein...; receptor family ligand binding region; HET: MSE; 1.88A {Burkholderia xenovorans}
Probab=100.00 E-value=1.4e-37 Score=310.09 Aligned_cols=337 Identities=14% Similarity=0.173 Sum_probs=284.2
Q ss_pred CCCcEEEEEEEecCC---cc-chhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEcCCC
Q 008863 31 IEEVTKIGAIVDANS---QM-GKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMET 106 (550)
Q Consensus 31 ~~~~i~IG~i~~~~~---~~-g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG~~~ 106 (550)
.+++|+||+++|+++ .. |.....|+++|++++|..-.|++|+++++|+++++..+.+.+++|+.+++|.+||||.+
T Consensus 3 ~~~~i~IG~~~p~sg~~a~~~g~~~~~g~~~a~~~i~ggi~G~~i~l~~~D~~~~~~~a~~~~~~li~~~~v~~iiG~~~ 82 (379)
T 3n0w_A 3 STGQVTLGVLTDMSSVYADSAGKGSVAAVQLAIEDVGGKALGQPVKLVSADYQMKTDVALSIAREWFDRDGVDAIFDVVN 82 (379)
T ss_dssp ---CCEEEEEECSSSTTTTTSHHHHHHHHHHHHHHTTTEETTEECEEEEEECTTCHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred CCCcEEEEEEeCCccccccccCHHHHHHHHHHHHHhcCCCCCeEEEEEEeCCCCCHHHHHHHHHHHHHhCCceEEEcCCC
Confidence 346899999999984 34 77899999999999942216899999999999999999999999998789999999999
Q ss_pred hHHHHHHHHhhccCCccEEeccCCCCCCccc-CCCCCeEEEEecCcHHhHHHHHHHHHHcCCeEEEEEEEcCCCCCcchh
Q 008863 107 WEETAVVAEIASRVQVPILSFAAPAVTPLSM-SRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGK 185 (550)
Q Consensus 107 s~~~~~v~~~~~~~~iP~is~~~~~~~~~~~-~~~~~~~~~~~p~~~~~~~al~~~l~~~~w~~v~ii~~~~~~g~~~~~ 185 (550)
+..+.++++++...++|+|+++++ ++.+. ...+||+||+.|++..++.++++++.+++|+++++|++++++| ...
T Consensus 83 s~~~~a~~~~~~~~~ip~i~~~~~--~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~~g~~~vaii~~~~~~g--~~~ 158 (379)
T 3n0w_A 83 SGTALAINNLVKDKKKLAFITAAA--ADQIGGTECNGYGIGFLYNFTSIVKTVVQAQLAKGYKTWFLMLPDAAYG--DLM 158 (379)
T ss_dssp HHHHHHHHHHHHHHTCEEEECSCC--CTTTTTTTCCSSEEECSCCHHHHHHHHHHHHHHTTCCEEEEEEESSHHH--HHH
T ss_pred cHHHHHHHHHHHHcCceEEEcCCC--chhhhcccCCCcEEEEeCChHHHHHHHHHHHHHcCCcEEEEEecccchh--HHH
Confidence 999999999999999999999887 56544 3468999999999999999999999999999999999999999 999
Q ss_pred HHHHHHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcCCCeEEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEE
Q 008863 186 LALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGLVGKDSVWI 265 (550)
Q Consensus 186 ~~~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~~ii~~~~~~~~~~~il~~a~~~g~~~~~~~~i 265 (550)
.+.+++.+++.| ++++....++... .|+...++++++.++++|++ .+....+..++++++++|+..+.+ ++
T Consensus 159 ~~~~~~~~~~~G-~~v~~~~~~~~~~------~d~~~~l~~i~~~~~d~v~~-~~~~~~~~~~~~~~~~~g~~~~~~-~~ 229 (379)
T 3n0w_A 159 NAAIRRELTAGG-GQIVGSVRFPFET------QDFSSYLLQAKASGAQLIVS-TSGGAANINIMKQAREFGLPSKTQ-KV 229 (379)
T ss_dssp HHHHHHHHHHHT-CEEEEEEEECTTC------CCCHHHHHHHHHHTCSEEEE-CCCHHHHHHHHHHHHHTTCSCSSC-EE
T ss_pred HHHHHHHHHHcC-CEEEEEEeCCCCC------CCHHHHHHHHHHCCCCEEEE-ecccchHHHHHHHHHHcCCCCCCc-EE
Confidence 999999999999 9998887776543 57888999999999999999 999999999999999999987643 34
Q ss_pred Eeccch-hhcccCChhHHhhcCceEEEEeecCCCChhHHHHHHHHHHHhhccCCCCCCCCCCchhhHHhHHHHHHHHHHH
Q 008863 266 VTNTVA-NALDSLNTTVISSMEGTLGIKSYYSDDSSPYKEFSALFRRNFTSEYPEEDHFHPSIHALRAHDSIKIITEAIG 344 (550)
Q Consensus 266 ~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~yDav~~~a~Al~ 344 (550)
.+..+. ..+... .....+|++....+....+|..++|.++|+++| +..|+.+++.+|||++++++|++
T Consensus 230 ~~~~~~~~~~~~~---~~~~~~g~~~~~~~~~~~~~~~~~f~~~~~~~~--------g~~p~~~~~~~Yda~~~~~~Al~ 298 (379)
T 3n0w_A 230 GGMIDILTDVKSA---GLRVMQGQEYATSFYWNMDDRTRAFAKRFYAKM--------GKMPTNNQAGGYSAALQYLKAVN 298 (379)
T ss_dssp ECCBCCHHHHHHH---CHHHHTTCEEEESCCTTSSHHHHHHHHHHHHHH--------SSCCCHHHHHHHHHHHHHHHHHH
T ss_pred EecccchHHHHhh---CHHhhCCeEEEeeecCCCCHHHHHHHHHHHHHH--------CCCCChHHHHHHHHHHHHHHHHH
Confidence 443322 211111 124577887776665555688999999999888 44678899999999999999999
Q ss_pred hhccCCCCHHHHHHHHHhCccccccee-EEEeCCCCCCCCceEEEEeeCCe
Q 008863 345 RLNYNISSPEMLLRQMLSSDFSGLSGK-IRFKDGELLNADTLRIVNVVGKK 394 (550)
Q Consensus 345 ~~~~~~~~~~~l~~~l~~~~~~G~tG~-i~f~~~g~~~~~~~~i~~~~~~~ 394 (550)
+++.. +++.|+++|++++|.++.|. ++|+++|++. ..+.|+++++++
T Consensus 299 ~ag~~--~~~~v~~aL~~~~~~~~~G~~~~f~~~g~~~-~~~~i~~~~~~~ 346 (379)
T 3n0w_A 299 AIGSK--DPQKVFAYLKTIKFDDAVTRHGTLRPGGRLV-RDMYLVRAKKPE 346 (379)
T ss_dssp HHTCC--CHHHHHHHHTTCCBCSSSCCSBEECTTSBEE-CCEEEEEECCGG
T ss_pred HhCCC--CHHHHHHHHhcCCccccCCCceeECCCCCcc-cceEEEEEEchh
Confidence 99876 99999999999999999884 9999988875 789999998643
No 25
>3hut_A Putative branched-chain amino acid ABC transporter; extracellular ligand-binding receptor,transport protein; 1.93A {Rhodospirillum rubrum atcc 11170}
Probab=100.00 E-value=3.4e-37 Score=304.97 Aligned_cols=343 Identities=15% Similarity=0.178 Sum_probs=290.1
Q ss_pred CcEEEEEEEecCC---ccchhHHHHHHHHHHHHhcCC--CCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEcCCCh
Q 008863 33 EVTKIGAIVDANS---QMGKQAITAMKIAVQNFNSDS--RNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETW 107 (550)
Q Consensus 33 ~~i~IG~i~~~~~---~~g~~~~~a~~~Av~~iN~~~--~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG~~~s 107 (550)
++|+||+++|.++ ..+.....|+++|++++|+++ .|++++++++|+++++..+.+.+++++.+++|.+||||.++
T Consensus 3 ~~i~IG~i~p~sg~~~~~~~~~~~g~~~a~~~~n~~ggi~G~~~~l~~~d~~~~~~~~~~~~~~l~~~~~v~~iig~~~s 82 (358)
T 3hut_A 3 LALLLGYELPLTGANAAYGRVFQEAARLQLDRFNAAGGVGGRPVDILYADSRDDADQARTIARAFVDDPRVVGVLGDFSS 82 (358)
T ss_dssp CCEEEEEEECSSSTTHHHHHHHHHHHHHHHHHHHHTTTBTTBCEEEEEEECTTCHHHHHHHHHHHHHCTTEEEEEECSSH
T ss_pred ccEEEEEEeccCCchhhcCHHHHHHHHHHHHHHHhhCCCCCeEEEEEEecCCCCHHHHHHHHHHHhccCCcEEEEcCCCc
Confidence 5899999999984 357789999999999999987 58999999999999999999999999966899999999999
Q ss_pred HHHHHHHHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHHcCCeEEEEEEEcCCCCCcchhHH
Q 008863 108 EETAVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLA 187 (550)
Q Consensus 108 ~~~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~~~w~~v~ii~~~~~~g~~~~~~~ 187 (550)
..+.++..++...++|+|++.++ ++...... |++||+.|++..++.++++++...||+++++|+.++.++ ....+
T Consensus 83 ~~~~~~~~~~~~~~iP~v~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~g~~~ia~i~~~~~~~--~~~~~ 157 (358)
T 3hut_A 83 TVSMAAGSIYGKEGMPQLSPTAA--HPDYIKIS-PWQFRAITTPAFEGPNNAAWMIGDGFTSVAVIGVTTDWG--LSSAQ 157 (358)
T ss_dssp HHHHHHHHHHHHHTCCEEESSCC--CGGGTTSC-TTEEESSCCGGGHHHHHHHHHHHTTCCEEEEEEESSHHH--HHHHH
T ss_pred HHHHHHHHHHHHCCCcEEecCCC--CcccccCC-CeEEEecCChHHHHHHHHHHHHHcCCCEEEEEecCcHHH--HHHHH
Confidence 99999999999999999999887 56554333 899999999999999999999888999999999888888 88999
Q ss_pred HHHHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcCCCeEEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEEe
Q 008863 188 LLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGLVGKDSVWIVT 267 (550)
Q Consensus 188 ~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~~ii~~~~~~~~~~~il~~a~~~g~~~~~~~~i~~ 267 (550)
.+++.+++.| +++.....++... .++...++++++.++++|++ .++...+..+++++++.|+.. .|+..
T Consensus 158 ~~~~~l~~~g-~~v~~~~~~~~~~------~~~~~~~~~l~~~~~d~i~~-~~~~~~a~~~~~~~~~~g~~~---p~~~~ 226 (358)
T 3hut_A 158 AFRKAFELRG-GAVVVNEEVPPGN------RRFDDVIDEIEDEAPQAIYL-AMAYEDAAPFLRALRARGSAL---PVYGS 226 (358)
T ss_dssp HHHHHHHHTT-CEEEEEEEECTTC------CCCHHHHHHHHHHCCSEEEE-ESCHHHHHHHHHHHHHTTCCC---CEEEC
T ss_pred HHHHHHHHcC-CEEEEEEecCCCC------ccHHHHHHHHHhcCCCEEEE-ccCchHHHHHHHHHHHcCCCC---cEEec
Confidence 9999999999 9988776665532 57778899998889999999 999989999999999999964 46766
Q ss_pred ccchhhcccCChhHHhhcCceEEEEeecCC-CChhHHHHHHHHHHHhhccCCCCCCCCCCchhhHHhHHHHHHHHHHHhh
Q 008863 268 NTVANALDSLNTTVISSMEGTLGIKSYYSD-DSSPYKEFSALFRRNFTSEYPEEDHFHPSIHALRAHDSIKIITEAIGRL 346 (550)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~yDav~~~a~Al~~~ 346 (550)
+.+... ... .......+|++....+.+. .+|..++|.++|+++| +..|+.+++.+|||++++++|++++
T Consensus 227 ~~~~~~-~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~--------~~~p~~~~~~~yda~~~~~~al~~a 296 (358)
T 3hut_A 227 SALYSP-KFI-DLGGPAVEGVRLATAFVLGASDPVVVEFVSAYETLY--------GAIPTLFAAHGYDAVGIMLAAVGRA 296 (358)
T ss_dssp GGGCSH-HHH-HHHGGGGTTCEEEESCCTTCCSHHHHHHHHHHHHHH--------SSCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CcccCH-HHH-HHhHHhhCCeEEEeccCCCCCCHHHHHHHHHHHHHH--------CCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 654321 111 1122457788877765443 4588999999999887 4467889999999999999999999
Q ss_pred ccCCCCHHH-HHHHHHhC-cccccceeEEEeCCCCCCCCceEEEEeeCCeeeEEEEEeC
Q 008863 347 NYNISSPEM-LLRQMLSS-DFSGLSGKIRFKDGELLNADTLRIVNVVGKKYKELDFWLP 403 (550)
Q Consensus 347 ~~~~~~~~~-l~~~l~~~-~~~G~tG~i~f~~~g~~~~~~~~i~~~~~~~~~~vG~w~~ 403 (550)
+.. ++.. ++++|+++ +|+|++|+++|+++|++....+.|+++++++|+.+....+
T Consensus 297 g~~--~~~~~~~~~l~~~~~~~g~~G~~~f~~~g~~~~~~~~i~~~~~G~~~~~~~~~~ 353 (358)
T 3hut_A 297 GPE--VTRESLRDALAATDRYAGVTGITRFDPETRETTKILTRLVVREGDFRVIDREGH 353 (358)
T ss_dssp CTT--CCHHHHHHHHHTCCSEEETTEEEEECTTTCCEEECCEEEEEETTEEEEC-----
T ss_pred CCC--ChHHHHHHHHHhcCCCcCCceeeEECCCCCcCCCceEEEEEECCEEEEeccccc
Confidence 876 8888 99999999 9999999999999999856889999999999988876554
No 26
>3lkb_A Probable branched-chain amino acid ABC transporter, amino acid binding protein; branched amino acid, PSI-II, NYSGXRC, structural genomics; 2.40A {Thermus thermophilus}
Probab=100.00 E-value=5.1e-38 Score=314.79 Aligned_cols=352 Identities=14% Similarity=0.154 Sum_probs=293.3
Q ss_pred CcEEEEEEEecCC---ccchhHHHHHHHHHHHHhcCC--CCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEcCCCh
Q 008863 33 EVTKIGAIVDANS---QMGKQAITAMKIAVQNFNSDS--RNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETW 107 (550)
Q Consensus 33 ~~i~IG~i~~~~~---~~g~~~~~a~~~Av~~iN~~~--~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG~~~s 107 (550)
++|+||+++|+++ ..|.....|+++|++++|+++ .|++|+++++|+++++..+.+.+++|+.+++|.+||| .++
T Consensus 6 ~~i~IG~~~p~sG~~a~~g~~~~~g~~~a~~~iN~~ggi~G~~i~l~~~D~~~~~~~~~~~~~~li~~~~V~~iig-~~s 84 (392)
T 3lkb_A 6 QQVTLFWSGAITGPTSDAGAPYGAAVEDYCKWANERKLVPGVVFNCVVRDDQYNNANTQRFFEEAVDRFKIPVFLS-YAT 84 (392)
T ss_dssp EEEEEEEEECSSSTTHHHHHHHHHHHHHHHHHHHHHTSSTTEEEEEEEEECTTCHHHHHHHHHHHHHTTCCSCEEE-CCH
T ss_pred CceEEEEEecccCchhhcChhHHHHHHHHHHHHHhcCCcCCeEeEEEEecCCCCHHHHHHHHHHHHhhcCcEEEEe-CCc
Confidence 5899999999984 457789999999999999987 5899999999999999999999999998679999999 688
Q ss_pred HHHHHHHHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHH-cCCeEEEEEEEcCCCCCcchhH
Q 008863 108 EETAVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARK-YNWRRVAAIYEDNVYGGDSGKL 186 (550)
Q Consensus 108 ~~~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~-~~w~~v~ii~~~~~~g~~~~~~ 186 (550)
..+.++.+++...+||+|+++++ ++..+...++++||+.|++..++.++++++.. ++|+++++|+++++|| ....
T Consensus 85 ~~~~~~~~~~~~~~iP~i~~~~~--~~~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~~~g~~~iaii~~~~~~g--~~~~ 160 (392)
T 3lkb_A 85 GANLQLKPLIQELRIPTIPASMH--IELIDPPNNDYIFLPTTSYSEQVVALLEYIAREKKGAKVALVVHPSPFG--RAPV 160 (392)
T ss_dssp HHHHHHHHHHHHHTCCEEESCCC--GGGGSSSSCTTBCEEECCHHHHHHHHHHHHHHHCTTCEEEEEECSSHHH--HTTH
T ss_pred HHHHHHHHHHHhCCceEEecccC--hhhccCCCCCceEecCCChHHHHHHHHHHHHHhCCCCEEEEEEeCCchh--hhHH
Confidence 88888999999999999998766 44344456799999999999999999999976 6999999999988888 8899
Q ss_pred HHHHHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcCCCeEEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEE
Q 008863 187 ALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGLVGKDSVWIV 266 (550)
Q Consensus 187 ~~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~~ii~~~~~~~~~~~il~~a~~~g~~~~~~~~i~ 266 (550)
+.+++.+++.| +++.....++... .|+...++++++.++++|++ .+....+..++++++++|+.. .|+.
T Consensus 161 ~~~~~~l~~~G-~~v~~~~~~~~~~------~d~~~~~~~l~~~~~dav~~-~~~~~~a~~~~~~~~~~g~~~---~~~~ 229 (392)
T 3lkb_A 161 EDARKAARELG-LQIVDVQEVGSGN------LDNTALLKRFEQAGVEYVVH-QNVAGPVANILKDAKRLGLKM---RHLG 229 (392)
T ss_dssp HHHHHHHHHHT-CEEEEEEECCTTC------CCCHHHHHHHHHTTCCEEEE-ESCHHHHHHHHHHHHHTTCCC---EEEE
T ss_pred HHHHHHHHHcC-CeEEEEEeeCCCC------cCHHHHHHHHHhcCCCEEEE-ecCcchHHHHHHHHHHcCCCc---eEEE
Confidence 99999999999 9998877666532 57888999999999999999 899999999999999999965 5666
Q ss_pred eccchhhcccCChhHHhhcCceEEEEeecC-CCChhHHHHHHHHHHHhhccCCCCCCCCCC----chhhHHhHHHHHHHH
Q 008863 267 TNTVANALDSLNTTVISSMEGTLGIKSYYS-DDSSPYKEFSALFRRNFTSEYPEEDHFHPS----IHALRAHDSIKIITE 341 (550)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~----~~~~~~yDav~~~a~ 341 (550)
++.+... .+. .......+|++....+.. ..++...+|.++|+++|. ..|. .+++.+|||++++++
T Consensus 230 ~~~~~~~-~~~-~~~g~~~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~~--------~~p~~~~~~~~~~~yda~~~~~~ 299 (392)
T 3lkb_A 230 AHYTGGP-DLI-ALAGDAAEGFLWATSFYMAHEDTPGIRLQKEIGRKYG--------RPENFIESVNYTNGMLAAAIAVE 299 (392)
T ss_dssp CGGGCSH-HHH-HHHGGGGTTCEEEESBCCTTSCCHHHHHHHHHHHHTT--------CCHHHHTCHHHHHHHHHHHHHHH
T ss_pred ecCcccH-HHH-HhhhhhhcCeEEEEeecCCCCCchhHHHHHHHHHHhC--------CCcccccchhHHHHHHHHHHHHH
Confidence 5543211 111 112245778887765533 234678889999988874 2333 337889999999999
Q ss_pred HHHhhcc--CCCCHHHHHHHHHhCc----cc-------ccceeEEEeCCCCCCCCceEEEEeeCCeeeEEEEEeCCCCCc
Q 008863 342 AIGRLNY--NISSPEMLLRQMLSSD----FS-------GLSGKIRFKDGELLNADTLRIVNVVGKKYKELDFWLPNFGFS 408 (550)
Q Consensus 342 Al~~~~~--~~~~~~~l~~~l~~~~----~~-------G~tG~i~f~~~g~~~~~~~~i~~~~~~~~~~vG~w~~~~g~~ 408 (550)
|+++++. .+.+++.++++|++++ |+ |++|+++|+++|++....+.++++++++|+.|+.|....++.
T Consensus 300 al~~ag~~~~~~~~~~v~~aL~~~~~~~~~~~~~~~~~G~~G~i~f~~~~~~~~~~~~i~~~~~g~~~~v~~w~~~~~~~ 379 (392)
T 3lkb_A 300 AIRRAQERFKRITNETVYQAIVGMNGPNAFKPGFAVSTKQGVEIDFTKSEHTGAEGLRILEAKGGRFVPVTEPFTSALFR 379 (392)
T ss_dssp HHHHHHHHHSSCCHHHHHHHHHTCCGGGCBCCSSBCCCSSSCSBCCCSSCCEEECCBEEEEEETTEEEECSCCBCCHHHH
T ss_pred HHHHhhccCCCCCHHHHHHHHHhcCCCcCcccccccccccceeeEeCCCCcCCcccEEEEEEeCCEEEEeccccchhHHH
Confidence 9999986 0139999999999997 88 999999999988876678999999999999999998766665
Q ss_pred cc
Q 008863 409 KT 410 (550)
Q Consensus 409 ~~ 410 (550)
..
T Consensus 380 ~~ 381 (392)
T 3lkb_A 380 KV 381 (392)
T ss_dssp HH
T ss_pred hh
Confidence 44
No 27
>1usg_A Leucine-specific binding protein; leucine-binding protein, X-RAY crystallography, protein structure, ABC transport systems, transport protein; 1.53A {Escherichia coli} SCOP: c.93.1.1 PDB: 1usi_A* 1usk_A 2lbp_A 1z15_A 1z16_A 1z17_A 1z18_A 2liv_A
Probab=100.00 E-value=5.1e-37 Score=302.22 Aligned_cols=337 Identities=15% Similarity=0.177 Sum_probs=282.4
Q ss_pred cEEEEEEEecCCc---cchhHHHHHHHHHHHHhcCC--CCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEcCCChH
Q 008863 34 VTKIGAIVDANSQ---MGKQAITAMKIAVQNFNSDS--RNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWE 108 (550)
Q Consensus 34 ~i~IG~i~~~~~~---~g~~~~~a~~~Av~~iN~~~--~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~ 108 (550)
+|+||+++|.++. .+.....|+++|++++|+++ .|++|++++.|+++++..+.+.++++++ ++|.+||||.++.
T Consensus 2 ~i~IG~~~p~~g~~~~~~~~~~~g~~~a~~~iN~~ggi~G~~l~l~~~d~~~~~~~~~~~~~~l~~-~~v~~iig~~~s~ 80 (346)
T 1usg_A 2 DIKVAVVGAMSGPIAQWGDMEFNGARQAIKDINAKGGIKGDKLVGVEYDDACDPKQAVAVANKIVN-DGIKYVIGHLCSS 80 (346)
T ss_dssp CEEEEEEECSSSTTHHHHHHHHHHHHHHHHHHHHTTTBTTBCEEEEEEECTTCHHHHHHHHHHHHH-TTCCEEECCSSHH
T ss_pred cEEEEEEeCCCCcchhcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEeCCCCCHHHHHHHHHHHHh-CCCCEEEcCCCcH
Confidence 6999999999743 46788999999999999997 5899999999999999999999999997 6999999999988
Q ss_pred HHHHHHHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHH-HcCCeEEEEEEEcCCCCCcchhHH
Q 008863 109 ETAVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLAR-KYNWRRVAAIYEDNVYGGDSGKLA 187 (550)
Q Consensus 109 ~~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~-~~~w~~v~ii~~~~~~g~~~~~~~ 187 (550)
.+.++.+++...++|+|++.++ ++......+|++||+.|++..++.++++++. ++||+++++|+.++.++ ....+
T Consensus 81 ~~~~~~~~~~~~~ip~v~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~i~~i~~~~~~~--~~~~~ 156 (346)
T 1usg_A 81 STQPASDIYEDEGILMISPGAT--NPELTQRGYQHIMRTAGLDSSQGPTAAKYILETVKPQRIAIIHDKQQYG--EGLAR 156 (346)
T ss_dssp HHHHHHHHHHHHTCEEEECCCC--CGGGGSSCCSSEEECSCCGGGHHHHHHHHHHHTTCCSSEEEEECSSHHH--HHHHH
T ss_pred HHHHHHHHHHHCCCeEEeeCCC--ChHHhcCCCCcEEeccCChHHHHHHHHHHHHHhcCCCeEEEEECCCchH--HHHHH
Confidence 8888889999999999999877 5554433478999999999999999999984 57999999999988888 88889
Q ss_pred HHHHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcCCCeEEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEEe
Q 008863 188 LLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGLVGKDSVWIVT 267 (550)
Q Consensus 188 ~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~~ii~~~~~~~~~~~il~~a~~~g~~~~~~~~i~~ 267 (550)
.+++.+++.| +++.....++... .++...++++++.++++|++ .+....+..+++++++.|+.. .|+.+
T Consensus 157 ~~~~~l~~~g-~~v~~~~~~~~~~------~d~~~~~~~l~~~~~d~i~~-~~~~~~a~~~~~~~~~~g~~~---~~~~~ 225 (346)
T 1usg_A 157 SVQDGLKAAN-ANVVFFDGITAGE------KDFSALIARLKKENIDFVYY-GGYYPEMGQMLRQARSVGLKT---QFMGP 225 (346)
T ss_dssp HHHHHHHHTT-CCEEEEEECCTTC------CCCHHHHHHHHHTTCCEEEE-ESCHHHHHHHHHHHHHTTCCC---EEEEC
T ss_pred HHHHHHHHcC-CEEEEEeccCCCC------cCHHHHHHHHHhcCCCEEEE-cCcchHHHHHHHHHHHcCCCC---eEEec
Confidence 9999999999 9988766565432 46677889998889999999 888888999999999999975 47777
Q ss_pred ccchhhcccCChhHHhhcCceEEEEeecCCCChhHHHHHHHHHHHhhccCCCCCCCCCCchhhHHhHHHHHHHHHHHhhc
Q 008863 268 NTVANALDSLNTTVISSMEGTLGIKSYYSDDSSPYKEFSALFRRNFTSEYPEEDHFHPSIHALRAHDSIKIITEAIGRLN 347 (550)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~yDav~~~a~Al~~~~ 347 (550)
+.|... .+. .......+|++...++....+|..++|.++|+++| +..++.+++.+|||++++++|+++++
T Consensus 226 ~~~~~~-~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~f~~~~~~~~--------~~~~~~~~~~~yda~~~~~~al~~~g 295 (346)
T 1usg_A 226 EGVGNA-SLS-NIAGDAAEGMLVTMPKRYDQDPANQGIVDALKADK--------KDPSGPYVWITYAAVQSLATALERTG 295 (346)
T ss_dssp GGGCCT-THH-HHHGGGGTTCEEEECCCGGGSGGGHHHHHHHHHTT--------CCCCCHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCcH-HHH-HHhhHhhCCeEEecCCCCCCCHHHHHHHHHHHHHh--------CCCCchhHHHHHHHHHHHHHHHHHhC
Confidence 665421 111 11224567887766553334578889998888776 33567789999999999999999998
Q ss_pred cCCCCHHHHHHHHHhCcccccceeEEEeCCCCCCCCceEEEEee-CCeeeEE
Q 008863 348 YNISSPEMLLRQMLSSDFSGLSGKIRFKDGELLNADTLRIVNVV-GKKYKEL 398 (550)
Q Consensus 348 ~~~~~~~~l~~~l~~~~~~G~tG~i~f~~~g~~~~~~~~i~~~~-~~~~~~v 398 (550)
.. +++.++++|++.+|+|++|+++|+++|++....|.+++++ +++|+.+
T Consensus 296 ~~--~~~~l~~~l~~~~~~g~~G~i~f~~~g~~~~~~~~i~~~~~~G~~~~~ 345 (346)
T 1usg_A 296 SD--EPLALVKDLKANGANTVIGPLNWDEKGDLKGFDFGVFQWHADGSSTKA 345 (346)
T ss_dssp CC--CHHHHHHHHHHHCEEETTEEECBCTTSSBSSCCCEEEEECTTSCEEEC
T ss_pred CC--CHHHHHHHHHhCCCccceeeeEECCCCCccCCceEEEEEecCCEEEec
Confidence 76 8999999999999999999999999999877789999999 8887754
No 28
>4evq_A Putative ABC transporter subunit, substrate-bindi component; structural genomics, PSI-biology, midwest center for structu genomics; HET: MSE PHB; 1.40A {Rhodopseudomonas palustris} PDB: 4evr_A
Probab=100.00 E-value=1.1e-36 Score=303.23 Aligned_cols=344 Identities=13% Similarity=0.180 Sum_probs=292.5
Q ss_pred CcEEEEEEEecCC---ccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEcCCChHH
Q 008863 33 EVTKIGAIVDANS---QMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEE 109 (550)
Q Consensus 33 ~~i~IG~i~~~~~---~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~~ 109 (550)
++|+||+++|.++ ..|.....|+++|++++|..-+|++++++++|+++++..+.+.+.+++.+++|.+||||.++..
T Consensus 15 ~~i~IG~~~p~sg~~~~~~~~~~~g~~~a~~~~ng~~~g~~~~l~~~d~~~~~~~~~~~~~~l~~~~~v~~iig~~~s~~ 94 (375)
T 4evq_A 15 GALKVGLLLPYSGTYAPLGEAITRGLELYVQSQGGKLGGRSISFVKVDDESAPPKATELTTKLIQSEKADVLIGTVHSGV 94 (375)
T ss_dssp CCEEEEEEECSSSTTHHHHHHHHHHHHHHHHHTTTEETTEEEEEEEEECTTCHHHHHHHHHCCCCCSCCSEEEECSSHHH
T ss_pred CCeEEEEEeCCCCcchhcCHHHHHHHHHHHHHhCCCcCCEEEEEEEecCCCCHHHHHHHHHHHHhcCCceEEEcCCccHH
Confidence 6899999999984 4577889999999999982117899999999999999999999999998679999999999999
Q ss_pred HHHHHHhhccCCccEEeccCCCCCCccc-CCCCCeEEEEecCcHHhHHHHHHHHHHcCCeEEEEEEEcCCCCCcchhHHH
Q 008863 110 TAVVAEIASRVQVPILSFAAPAVTPLSM-SRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLAL 188 (550)
Q Consensus 110 ~~~v~~~~~~~~iP~is~~~~~~~~~~~-~~~~~~~~~~~p~~~~~~~al~~~l~~~~w~~v~ii~~~~~~g~~~~~~~~ 188 (550)
+.++.+++...++|+|++.++ ++... ...+|++||+.|++..++.++++++.++||+++++|++++.+| ....+.
T Consensus 95 ~~~~~~~~~~~~iP~v~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~ia~i~~~~~~~--~~~~~~ 170 (375)
T 4evq_A 95 AMAMVKIAREDGIPTIVPNAG--ADIITRAMCAPNVFRTSFANGQIGRATGDAMIKAGLKKAVTVTWKYAAG--EEMVSG 170 (375)
T ss_dssp HHHHHHHHHHHCCCEEESSCC--CGGGGTTTCCTTEEESSCCHHHHHHHHHHHHHHTTCCEEEEEEESSHHH--HHHHHH
T ss_pred HHHHHHHHHHcCceEEecCCC--ChhhcccCCCCCEEEeeCChHhHHHHHHHHHHHcCCcEEEEEecCchHH--HHHHHH
Confidence 999999999999999999987 56544 3458999999999999999999999999999999999988888 888999
Q ss_pred HHHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcCCCeEEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEEec
Q 008863 189 LAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGLVGKDSVWIVTN 268 (550)
Q Consensus 189 l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~~ii~~~~~~~~~~~il~~a~~~g~~~~~~~~i~~~ 268 (550)
+++.+++.| +++.....++... .++...++++++.++++|++ .++...+..+++++++.|+.. .|+.++
T Consensus 171 ~~~~l~~~G-~~v~~~~~~~~~~------~d~~~~~~~l~~~~~dai~~-~~~~~~a~~~~~~~~~~g~~v---p~~~~~ 239 (375)
T 4evq_A 171 FKKSFTAGK-GEVVKDITIAFPD------VEFQSALAEIASLKPDCVYA-FFSGGGALKFIKDYAAANLGI---PLWGPG 239 (375)
T ss_dssp HHHHHHHTT-CEEEEEEEECTTC------CCCHHHHHHHHHHCCSEEEE-ECCTHHHHHHHHHHHHTTCCC---CEEEEG
T ss_pred HHHHHHHcC-CeEEEEEecCCCC------ccHHHHHHHHHhcCCCEEEE-ecCcchHHHHHHHHHHcCCCc---eEEecC
Confidence 999999999 9988776666533 57788899998889999999 888999999999999999874 345443
Q ss_pred cchhhcccCChhHHhhcCceEEEEeecCC-CChhHHHHHHHHHHHhhccCCCCCCCCCCchhhHHhHHHHHHHHHHHhhc
Q 008863 269 TVANALDSLNTTVISSMEGTLGIKSYYSD-DSSPYKEFSALFRRNFTSEYPEEDHFHPSIHALRAHDSIKIITEAIGRLN 347 (550)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~yDav~~~a~Al~~~~ 347 (550)
|.. .... .......+|++....+... .+|..++|.++|+++| +..|+.+++.+|||++++++|+++++
T Consensus 240 -~~~-~~~~-~~~g~~~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~--------~~~p~~~~~~~yda~~~~~~al~~~g 308 (375)
T 4evq_A 240 -FLT-DGVE-AAAGPAGDGIKTVLHYVSDLDNAENQAFVKSFEAAY--------KIPPDVFAVQGWDAGQLLDAGVKAVG 308 (375)
T ss_dssp -GGT-TTTH-HHHGGGGTTCEEEESCCTTCCSHHHHHHHHHHHHHH--------SSCCCHHHHHHHHHHHHHHHHHHHTT
T ss_pred -cCC-HHHH-HhhhhhcCCeEEeeccCCCCCCHHHHHHHHHHHHHH--------CCCCcHHHHHHHHHHHHHHHHHHHhC
Confidence 421 1111 1223567888877665443 4588999999999888 45678899999999999999999998
Q ss_pred cCCCCHHHHHHHHHhCcccccceeEEEeCCCCCCCCceEEEEeeCCeeeEEEEEeC
Q 008863 348 YNISSPEMLLRQMLSSDFSGLSGKIRFKDGELLNADTLRIVNVVGKKYKELDFWLP 403 (550)
Q Consensus 348 ~~~~~~~~l~~~l~~~~~~G~tG~i~f~~~g~~~~~~~~i~~~~~~~~~~vG~w~~ 403 (550)
..+.+++.|+++|++++|+|++|+++|+++|++. ..+.|+++++++|+.|+.+.+
T Consensus 309 ~~~~~~~~l~~~l~~~~~~g~~G~i~f~~~g~~~-~~~~i~~~~~g~~~~v~~~~~ 363 (375)
T 4evq_A 309 GDVAKRKELNAAMAAASFASPRGPFKLSAAHNPV-QNFYLRELKGGKSVNLGLAAP 363 (375)
T ss_dssp TCTTCHHHHHHHHHTCEEEETTEEEEBCTTSCBC-CCEEEEEEETTEEEEEEEEEC
T ss_pred CCCCCHHHHHHHHhcCCcccCCcceeECCCCCcc-ccEEEEEEECCCcEEeeehhh
Confidence 6335999999999999999999999999988885 689999999999999998865
No 29
>4eyg_A Twin-arginine translocation pathway signal; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: VNL; 1.86A {Rhodopseudomonas palustris} PDB: 4ey3_A* 3t0n_A* 4eyk_A*
Probab=100.00 E-value=8.5e-37 Score=303.30 Aligned_cols=345 Identities=22% Similarity=0.303 Sum_probs=289.6
Q ss_pred CCcEEEEEEEecCC---ccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEcCCChH
Q 008863 32 EEVTKIGAIVDANS---QMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWE 108 (550)
Q Consensus 32 ~~~i~IG~i~~~~~---~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~ 108 (550)
.++|+||+++|+++ ..|.....|+++|++++|..-+|++|+++++|+++++..+.+.+++++.+++|.+||||.++.
T Consensus 4 ~~~i~IG~~~p~sg~~~~~g~~~~~g~~~a~~~~~~~i~G~~i~l~~~D~~~~~~~~~~~~~~li~~~~v~~iiG~~~s~ 83 (368)
T 4eyg_A 4 EDTFKVGLIVPMTGGQASTGKQIDNAIKLYIKKHGDTVAGKKIEVILKDDAAIPDNTKRLAQELIVNDKVNVIAGFGITP 83 (368)
T ss_dssp CCEEEEEEEECSSSTTHHHHHHHHHHHHHHHHHHCSEETTEEEEEEEEECTTCHHHHHHHHHHHHHTSCCSEEEECSSHH
T ss_pred CCcEEEEEEeCCcCcchhccHHHHHHHHHHHHHcCCCCCCeEEEEEEeCCCCCHHHHHHHHHHHHhcCCcEEEECCCccH
Confidence 36899999999984 347789999999999998522689999999999999999999999999878999999999999
Q ss_pred HHHHHHHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHHcCCeEEEEEEEcCCCCCcchhHHH
Q 008863 109 ETAVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLAL 188 (550)
Q Consensus 109 ~~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~~~w~~v~ii~~~~~~g~~~~~~~~ 188 (550)
.+.++++++...++|+|+++++ ++..... +|++||+.|++..++.++++++.++||+++++|++++.+| ....+.
T Consensus 84 ~~~~~~~~~~~~~ip~i~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~g~~~ia~i~~~~~~g--~~~~~~ 158 (368)
T 4eyg_A 84 AALAAAPLATQAKVPEIVMAAG--TSIITER-SPYIVRTSFTLAQSSIIIGDWAAKNGIKKVATLTSDYAPG--NDALAF 158 (368)
T ss_dssp HHHHHHHHHHHHTCCEEESSCC--CGGGGGG-CTTEEESSCCHHHHHHHHHHHHHHTTCCEEEEEEESSHHH--HHHHHH
T ss_pred HHHHHHHHHHhCCceEEeccCC--ChhhccC-CCCEEEecCChHHHHHHHHHHHHHcCCCEEEEEecCchHh--HHHHHH
Confidence 9999999999999999999887 5554433 7999999999999999999999999999999999988888 888999
Q ss_pred HHHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcCCCeEEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEEec
Q 008863 189 LAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGLVGKDSVWIVTN 268 (550)
Q Consensus 189 l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~~ii~~~~~~~~~~~il~~a~~~g~~~~~~~~i~~~ 268 (550)
+++.+++.| +++.....++... .|+...++++++.++++|++ .+....+..++++++++|+..+++.|+.++
T Consensus 159 ~~~~l~~~g-~~v~~~~~~~~~~------~d~~~~~~~l~~~~~d~v~~-~~~~~~a~~~~~~~~~~g~~~~~v~~~~~~ 230 (368)
T 4eyg_A 159 FKERFTAGG-GEIVEEIKVPLAN------PDFAPFLQRMKDAKPDAMFV-FVPAGQGGNFMKQFAERGLDKSGIKVIGPG 230 (368)
T ss_dssp HHHHHHHTT-CEEEEEEEECSSS------CCCHHHHHHHHHHCCSEEEE-ECCTTCHHHHHHHHHHTTGGGTTCEEEEET
T ss_pred HHHHHHHcC-CEEEEEEeCCCCC------CcHHHHHHHHHhcCCCEEEE-eccchHHHHHHHHHHHcCCCcCCceEEecC
Confidence 999999999 9998877776533 57888999999999999999 888889999999999999987666788776
Q ss_pred cchh--hcccCChhHHhhcCceEEEEeecC-CCChhHHHHHHHHHHHhhccCCCCCCCCCCchhhHHhHHHHHHHHHHHh
Q 008863 269 TVAN--ALDSLNTTVISSMEGTLGIKSYYS-DDSSPYKEFSALFRRNFTSEYPEEDHFHPSIHALRAHDSIKIITEAIGR 345 (550)
Q Consensus 269 ~~~~--~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~yDav~~~a~Al~~ 345 (550)
.+.. ...... ...+|++...++.. ..+|..++|.++| ++|. +..|+.+++.+|||++++++|+++
T Consensus 231 ~~~~~~~~~~~g----~~~~g~~~~~~~~~~~~~~~~~~f~~~~-~~~~-------~~~p~~~~~~~yda~~~~~~al~~ 298 (368)
T 4eyg_A 231 DVMDDDLLNSMG----DAALGVVTAHMYSAAHPSAMNKEFVAAY-KKEF-------GQRPGFMAVGGYDGIHLVFEALKK 298 (368)
T ss_dssp TTTCHHHHTTCC----GGGTTCEEEESCCTTCCSHHHHHHHHHH-HHHH-------SSCCCHHHHHHHHHHHHHHHHHHH
T ss_pred cccCHHHHHhhh----hhhCCeEEeeecCCCCCCHHHHHHHHHH-HHhC-------CCCCChHHHHHHHHHHHHHHHHHH
Confidence 4321 222211 44678877665543 2458899999999 8774 235678899999999999999999
Q ss_pred hccCCCCHHHHHHHHHhCcccccceeEEEe-CCCCCCCCceEEEEee--CCeeeEE--EEEeC
Q 008863 346 LNYNISSPEMLLRQMLSSDFSGLSGKIRFK-DGELLNADTLRIVNVV--GKKYKEL--DFWLP 403 (550)
Q Consensus 346 ~~~~~~~~~~l~~~l~~~~~~G~tG~i~f~-~~g~~~~~~~~i~~~~--~~~~~~v--G~w~~ 403 (550)
++.. .+++.|+++|++++|+|++|+++|+ ++|+. ...+.|.+++ +++|+.+ +.|.+
T Consensus 299 ~g~~-~~~~~l~~al~~~~~~g~~G~i~f~~~~~~~-~~~~~i~~~~~~~G~~~~v~~~~~~~ 359 (368)
T 4eyg_A 299 TGGK-ADGDSLIAAMKGMKWESPRGPISIDPETRDI-VQNIYIRKVEKVDGELYNIEFAKFDA 359 (368)
T ss_dssp TTTC-CSHHHHHHHHTTCEEEETTEEEEECTTTCCE-EEEEEEEEEEEETTEEEEEEEEEEEE
T ss_pred hCCC-CCHHHHHHHHHcCCcccCCCCeEECcccCCc-ccceEEEEEEecCCeEEEEEeecccc
Confidence 9742 4899999999999999999999999 56665 4788899988 8888665 55543
No 30
>3n0x_A Possible substrate binding protein of ABC transpo system; receptor family ligand binding region, structural genomics; HET: MSE; 1.50A {Rhodopseudomonas palustris} PDB: 3nnd_B
Probab=100.00 E-value=5.2e-37 Score=305.14 Aligned_cols=330 Identities=15% Similarity=0.177 Sum_probs=269.0
Q ss_pred CcEEEEEEEecCC---ccchhHHHHHHHHHHHHhc-CC--CCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEcCCC
Q 008863 33 EVTKIGAIVDANS---QMGKQAITAMKIAVQNFNS-DS--RNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMET 106 (550)
Q Consensus 33 ~~i~IG~i~~~~~---~~g~~~~~a~~~Av~~iN~-~~--~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG~~~ 106 (550)
++|+||+++|+++ ..|.....|+++|++++|+ .+ .|++|+++++|+++++..+.+.+++|+.+++|.+||||.+
T Consensus 3 ~~i~IG~~~plsG~~a~~g~~~~~g~~lA~~~iN~~~ggi~G~~i~l~~~D~~~~~~~a~~~~~~li~~~~v~aiiG~~~ 82 (374)
T 3n0x_A 3 DDLKIALIYGKTGPLEAYAKQTETGLMMGLEYATKGTMTLDGRKIVVITKDDQSKPDLSKAALAEAYQDDGADIAIGTSS 82 (374)
T ss_dssp -CEEEEEEECCSSTTHHHHHHHHHHHHHHHHHHTTTCCEETTEEEEEEEEECTTCHHHHHHHHHHHHHTSCCSEEEECSS
T ss_pred CCEEEEEecCCCCchhhhCHHHHHHHHHHHHHHhccCCCcCCEEEEEEEecCCCCHHHHHHHHHHHHHhCCceEEEcCCC
Confidence 5799999999994 4578899999999999998 45 6899999999999999999999999998789999999999
Q ss_pred hHHHHHHHHhhccCCccEEeccCCCCCCccc-CCCCCeEEEEecCcHHhHHHHHHHHHHcCCeEEEEEEEcCCCCCcchh
Q 008863 107 WEETAVVAEIASRVQVPILSFAAPAVTPLSM-SRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGK 185 (550)
Q Consensus 107 s~~~~~v~~~~~~~~iP~is~~~~~~~~~~~-~~~~~~~~~~~p~~~~~~~al~~~l~~~~w~~v~ii~~~~~~g~~~~~ 185 (550)
|..+.+++++++..++|+|++.++ ++.+. ...+||+||+.|++..+..+++.++++++| ++++|+++++|| ...
T Consensus 83 s~~~~a~~~~~~~~~ip~i~~~~~--~~~~~~~~~~~~~fr~~~~~~~~~~~~~~~~~~~~~-~v~ii~~~~~~g--~~~ 157 (374)
T 3n0x_A 83 SAAALADLPVAEENKKILIVEPAV--ADQITGEKWNRYIFRTGRNSSQDAISNAVAIGKQGV-TIATLAQDYAFG--RDG 157 (374)
T ss_dssp HHHHHHHHHHHHHHTCCEEECSCC--CGGGGTTTCCTTEEECSCCHHHHHHHHHHHHCCTTE-EEEEEEESSHHH--HHH
T ss_pred cHHHHHHHHHHHHcCccEEEcCCC--chhhhcCCCCCeEEEccCCchhHHHHHHHHHhccCC-EEEEEeCCchHH--HHH
Confidence 999999999999999999998776 56544 445799999999999999999977788888 799999999999 999
Q ss_pred HHHHHHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcCC-----CeEEEEEcCCHHHHHHHHHHHHHcCCCCC
Q 008863 186 LALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQ-----SRVFIVLQASLDMTIHLFTEANRMGLVGK 260 (550)
Q Consensus 186 ~~~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~~-----~~~ii~~~~~~~~~~~il~~a~~~g~~~~ 260 (550)
.+.+++.+++.| ++++....++... .|+..++++|++.+ +++|++ .+..... .+.++.++++...
T Consensus 158 ~~~~~~~~~~~G-~~vv~~~~~~~~~------~d~~~~l~~i~~~~~~~~~~d~v~~-~~~g~~~--~~~~~~~~~~~~~ 227 (374)
T 3n0x_A 158 VAAFKEALAKTG-ATLATEEYVPTTT------TDFTAVGQRLFDALKDKPGKKIIWV-IWAGGGD--PLTKLQDMDPKRY 227 (374)
T ss_dssp HHHHHHHHTTTT-CEEEEEEEECTTC------CCCHHHHHHHHHHHTTCSSEEEEEE-CCCSSSC--HHHHHHHTCGGGG
T ss_pred HHHHHHHHHHcC-CEEeeeecCCCCC------ccHHHHHHHHHhcCCCCCCCCEEEE-EecCCcH--HHHHHHHcchhhc
Confidence 999999999999 9999888777643 68899999999888 999998 6333211 2455666666554
Q ss_pred CEEEEEeccchhhcccCChhHHhhcCceEEEEeecC--CCChhHHHHHHHHHHHhhccCCCCCCCCCCchhhHHhHHHHH
Q 008863 261 DSVWIVTNTVANALDSLNTTVISSMEGTLGIKSYYS--DDSSPYKEFSALFRRNFTSEYPEEDHFHPSIHALRAHDSIKI 338 (550)
Q Consensus 261 ~~~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~yDav~~ 338 (550)
++.++.......... ......|..+...+.. ..+|..++|.++|+++| +..|+.+++.+|||+++
T Consensus 228 g~~~~~~~~~~~~~~-----~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~y~~~~--------g~~p~~~a~~~Yda~~~ 294 (374)
T 3n0x_A 228 GIELSTGGNILPALA-----AYKRLPGMEGATYYYYDIPKNPINEWLVTEHQKRF--------NAPPDFFTAGGFSAAMA 294 (374)
T ss_dssp TEEEEECCCCTTGGG-----GGGGSTTCEEEESCCTTSCCSHHHHHHHHHHHHHH--------SSCCCHHHHHHHHHHHH
T ss_pred CCeeeeccccchhhh-----hhhhhcCccccceeccCCCCCHHHHHHHHHHHHHH--------CCCCChhHHHHHHHHHH
Confidence 555554333211111 1133456655544322 23578899999999888 45678899999999999
Q ss_pred HHHHHHhhccCCCCHHHHHHHHHhCcccccceeEEEeCCCCCCCCceEEEEeeC
Q 008863 339 ITEAIGRLNYNISSPEMLLRQMLSSDFSGLSGKIRFKDGELLNADTLRIVNVVG 392 (550)
Q Consensus 339 ~a~Al~~~~~~~~~~~~l~~~l~~~~~~G~tG~i~f~~~g~~~~~~~~i~~~~~ 392 (550)
+++|+++++.. ++..|+++|++++|+|++|+++|+..+++....+.|++++.
T Consensus 295 l~~Al~~ag~~--~~~~v~~aL~~~~~~g~~G~i~f~~~~~~~~~~~~i~~~~~ 346 (374)
T 3n0x_A 295 VVTAVQKAKST--DTEKLIAAMEGMEFDTPKGKMVFRKEDHQALQSMYHFKVKV 346 (374)
T ss_dssp HHHHHHHHTSC--CHHHHHHHHTTCEEEETTEEEEECTTTCBEECCEEEEEEEC
T ss_pred HHHHHHHhCCC--CHHHHHHHHhcCCccCCCCCEEECcccCccccceEEEEEEe
Confidence 99999999875 99999999999999999999999965555567899999975
No 31
>3eaf_A ABC transporter, substrate binding protein; PSI2, NYSGXRC, substrate binding P structural genomics, protein structure initiative; 2.00A {Aeropyrum pernix}
Probab=100.00 E-value=2e-36 Score=302.98 Aligned_cols=342 Identities=14% Similarity=0.158 Sum_probs=285.1
Q ss_pred CcEEEEEEEecCC---ccchhHHHHHHHHHHHHhcCC----CCc--EEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEc
Q 008863 33 EVTKIGAIVDANS---QMGKQAITAMKIAVQNFNSDS----RNH--KLSLQIRDHNRDPFQAATAAQELINKEKVKVIAG 103 (550)
Q Consensus 33 ~~i~IG~i~~~~~---~~g~~~~~a~~~Av~~iN~~~----~~~--~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG 103 (550)
++|+||+++|+++ ..|.....|+++|++++|+++ +|+ +|+++++|+++++..+.+.+++|+.+++|.+|||
T Consensus 3 ~~i~IG~~~p~sG~~a~~g~~~~~g~~~a~~~iN~~ggi~~~G~~~~l~l~~~D~~~~~~~a~~~~~~li~~~~V~~iiG 82 (391)
T 3eaf_A 3 LTINVGLLVDETGPTSDVGKGYSLGAELAFKYFNEKGIYTKDGVRVNINYIKRDYAYNPTTAEEYYREFRDRYGVIAIIG 82 (391)
T ss_dssp EEEEEEEEECSSSTTHHHHHHHHHHHHHHHHHHHHHCEECTTCCEEEEEEEEEECTTCHHHHHHHHHHHHHTTCCSEEEE
T ss_pred ccEEEEEEEcCCCchhhhhHHHHHHHHHHHHHHHHcCCCccCCeEEEEEEEEeCCCCCHHHHHHHHHHHHhhcCcEEEEE
Confidence 5899999999984 457788999999999999986 567 9999999999999999999999996689999999
Q ss_pred CCChHHHHHHHHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHH-cCCeEEEEEEE-cCCCCC
Q 008863 104 METWEETAVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARK-YNWRRVAAIYE-DNVYGG 181 (550)
Q Consensus 104 ~~~s~~~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~-~~w~~v~ii~~-~~~~g~ 181 (550)
.++..+.++++++...+||+|+++++ ++ .. .+|++||+.|++..++.++++++.+ +||++|++|++ ++++|
T Consensus 83 -~~s~~~~a~~~~~~~~~iP~i~~~~~--~~-~~--~~~~~f~~~~~~~~~~~~~~~~l~~~~g~~~iaii~~~~~~~g- 155 (391)
T 3eaf_A 83 -WGTADTEKLSDQVDTDKITYISASYS--AK-LL--VKPFNFYPAPDYSTQACSGLAFLASEFGQGKLALAYDSKVAYS- 155 (391)
T ss_dssp -CCHHHHHHHHHHHHHHTCEEEESCCC--GG-GT--TSTTEECSSCCHHHHHHHHHHHHHHHHCSEEEEEEECTTCHHH-
T ss_pred -cCcHHHHHHHHHHhhcCCeEEecccc--hh-hc--CCCcEEEeCCCHHHHHHHHHHHHHHhcCCCEEEEEEecCChhH-
Confidence 68888889999999999999998766 33 32 6799999999999999999999977 69999999999 88898
Q ss_pred cchhHHHHHHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHH--hhcCCCeEEEEEcCCHHHHHHHHHHHHHcCCCC
Q 008863 182 DSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKK--VQDKQSRVFIVLQASLDMTIHLFTEANRMGLVG 259 (550)
Q Consensus 182 ~~~~~~~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~--i~~~~~~~ii~~~~~~~~~~~il~~a~~~g~~~ 259 (550)
....+.+++.+++.| +++.....++.. ..|+...+++ +++.++++|++ .++...+..++++++++|+..
T Consensus 156 -~~~~~~~~~~l~~~G-~~v~~~~~~~~~------~~d~~~~~~~~~l~~~~~dav~~-~~~~~~~~~~~~~~~~~g~~~ 226 (391)
T 3eaf_A 156 -RSPIGAIKKAAPSLG-LQVVGDYDLPLR------ATEADAERIAREMLAADPDYVWC-GNTISSCSLLGRAMAKVGLDA 226 (391)
T ss_dssp -HTTHHHHHHHTGGGT-EEEEEEEECCTT------CCHHHHHHHHHHHHTTCCSEEEE-CSCHHHHHHHHHHHHHHTCCC
T ss_pred -HHHHHHHHHHHHHcC-CceeeeeccCCC------CcCHHHHHHHHHHHHcCCCEEEE-ecCcHHHHHHHHHHHHCCCCc
Confidence 999999999999999 999887777653 3689999999 99999999999 999999999999999999965
Q ss_pred CCEEEEEeccchhhcccCChhHHhhcCc-eEEEEeec--C--CCChhHHHHHHHHHHHhhccCCCCCCCCC--CchhhHH
Q 008863 260 KDSVWIVTNTVANALDSLNTTVISSMEG-TLGIKSYY--S--DDSSPYKEFSALFRRNFTSEYPEEDHFHP--SIHALRA 332 (550)
Q Consensus 260 ~~~~~i~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~--~--~~~~~~~~f~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 332 (550)
.|+.++. ....... .......+| .+....+. + ...|. .+|.++|+++|.. ..| +.+++.+
T Consensus 227 ---~~~~~~~-~~~~~~~-~~~g~~~~g~~~~~~~~~~~~~~~~~~~-~~f~~~~~~~~~~-------~~p~~~~~~~~~ 293 (391)
T 3eaf_A 227 ---FLLTNVW-GFDERSP-QLIGEGGYGKVFGISPFIYPMFGQDVEG-IQTIFEAARMNGV-------SEDQINLRVVQG 293 (391)
T ss_dssp ---EEEECGG-GCSTTHH-HHHCGGGTTSEEEEESBCCGGGCTTCHH-HHHHHHHHHHTTC-------CGGGCCHHHHHH
T ss_pred ---eEEEecc-CCCHHHH-HhhhhhccCcEEEEEEecCcccCCCCch-hHHHHHHHHHhCC-------CCcccccHHHHH
Confidence 4555433 2111111 112245788 76665554 1 23344 6788989888741 233 4788999
Q ss_pred hHHHHHHHHHHHhh---c--cCCCCHHHHHHHHHhCccc--ccce-eEEEeCCCCCCCCceEEEEe-eCCeeeEEEEEeC
Q 008863 333 HDSIKIITEAIGRL---N--YNISSPEMLLRQMLSSDFS--GLSG-KIRFKDGELLNADTLRIVNV-VGKKYKELDFWLP 403 (550)
Q Consensus 333 yDav~~~a~Al~~~---~--~~~~~~~~l~~~l~~~~~~--G~tG-~i~f~~~g~~~~~~~~i~~~-~~~~~~~vG~w~~ 403 (550)
|||++++++|++++ + .. +++.++++|++.+|+ |++| +++|++++++....+.|+++ ++++|+.++.|..
T Consensus 294 yda~~~l~~Al~~a~~~g~~~~--~~~~v~~aL~~~~~~~~G~~G~~i~f~~~~~~~~~~~~i~~~~~~G~~~~v~~~~~ 371 (391)
T 3eaf_A 294 FVNVWLLIKAIESVTSQDLQER--GGEALKEALEANTFDLGGITADTIDYEPGFHLAYRKVFIIKLGENGELQLMGKFEA 371 (391)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHH--THHHHHHHHHHCCBCSTTCBSSCBCCBTTBCCCCCCEEEEEECTTSSEEEEEEECC
T ss_pred HHHHHHHHHHHHHHHhcCCCCC--CHHHHHHHHHhCCCCCCCccccceeeCCCCCCcceEEEEEEEecCCEEEEeeeecC
Confidence 99999999999998 6 54 899999999998898 9999 99999877666789999999 8999999999985
Q ss_pred CC
Q 008863 404 NF 405 (550)
Q Consensus 404 ~~ 405 (550)
..
T Consensus 372 ~~ 373 (391)
T 3eaf_A 372 PS 373 (391)
T ss_dssp CT
T ss_pred cc
Confidence 43
No 32
>3lop_A Substrate binding periplasmic protein; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.55A {Ralstonia solanacearum}
Probab=100.00 E-value=4.6e-36 Score=297.40 Aligned_cols=340 Identities=10% Similarity=0.104 Sum_probs=283.4
Q ss_pred CCcEEEEEEEecCC---ccchhHHHHHHHHHHHHhcCC--CCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEcCCC
Q 008863 32 EEVTKIGAIVDANS---QMGKQAITAMKIAVQNFNSDS--RNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMET 106 (550)
Q Consensus 32 ~~~i~IG~i~~~~~---~~g~~~~~a~~~Av~~iN~~~--~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG~~~ 106 (550)
+++|+||+++|+++ ..|.....|+++|++++|+++ .|++++++++|+++++..+.+.+++++.+++|.+||||.+
T Consensus 3 ~~~i~IG~~~p~sG~~~~~g~~~~~g~~~a~~~~N~~ggi~G~~i~l~~~D~~~~~~~~~~~~~~l~~~~~v~~iig~~~ 82 (364)
T 3lop_A 3 LADISVIQSLPLSGSQAVTGRALNAGARLYFDWLNLNGGINGETIRLVARDDEQKIEQTVRNVRDMARVDNPVALLTVVG 82 (364)
T ss_dssp --CEEEEEEECSSSTTHHHHHHHHHHHHHHHHHHHHTTTBTTBCEEEEEEECTTCHHHHHHHHHHHHHHSCEEEEECCCC
T ss_pred CCeEEEEEEecCCCcchhccHHHHHHHHHHHHHHHhcCCcCCeEEEEEEeCCCCCHHHHHHHHHHHHhhcCcEEEEecCC
Confidence 46899999999973 457788999999999999998 5899999999999999999999999998779999999999
Q ss_pred hHHHHHHHH--hhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHHcCCeEEEEEEEcCCCCCcch
Q 008863 107 WEETAVVAE--IASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSG 184 (550)
Q Consensus 107 s~~~~~v~~--~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~~~w~~v~ii~~~~~~g~~~~ 184 (550)
+..+.++++ ++...+||+|++.++ ++.+.. +|++||+.|++..++.++++++.++||++|++|++++++| ..
T Consensus 83 s~~~~~~~~~~~~~~~~iP~v~~~~~--~~~~~~--~~~~f~~~~~~~~~~~~~~~~l~~~g~~~iaii~~~~~~g--~~ 156 (364)
T 3lop_A 83 TANVEALMREGVLAEARLPLVGPATG--ASSMTT--DPLVFPIKASYQQEIDKMITALVTIGVTRIGVLYQEDALG--KE 156 (364)
T ss_dssp HHHHHHHHHTTHHHHHTCCEESCSCC--CGGGGS--CTTEECCSCCHHHHHHHHHHHHHHTTCCCEEEEEETTHHH--HH
T ss_pred CHHHHhhCchhhHHhcCCcEEEcccC--cHhhcc--CCcEEEeCCChHHHHHHHHHHHHHcCCceEEEEEeCchhh--HH
Confidence 999999999 999999999999887 555443 7999999999999999999999999999999999998898 88
Q ss_pred hHHHHHHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcCCCeEEEEEcCCHHHHHHHHHHHHHcCCCCCCEEE
Q 008863 185 KLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGLVGKDSVW 264 (550)
Q Consensus 185 ~~~~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~~ii~~~~~~~~~~~il~~a~~~g~~~~~~~~ 264 (550)
..+.+++.+++.| +++.....++.. ..|+...++++++.++++|++ .++...+..++++++++|+.. .|
T Consensus 157 ~~~~~~~~~~~~G-~~v~~~~~~~~~------~~d~~~~~~~l~~~~~d~v~~-~~~~~~a~~~~~~~~~~g~~~---~~ 225 (364)
T 3lop_A 157 AITGVERTLKAHA-LAITAMASYPRN------TANVGPAVDKLLAADVQAIFL-GATAEPAAQFVRQYRARGGEA---QL 225 (364)
T ss_dssp HHHHHHHHHHTTT-CCCSEEEEECTT------SCCCHHHHHHHHHSCCSEEEE-ESCHHHHHHHHHHHHHTTCCC---EE
T ss_pred HHHHHHHHHHHcC-CcEEEEEEecCC------CccHHHHHHHHHhCCCCEEEE-ecCcHHHHHHHHHHHHcCCCC---eE
Confidence 9999999999999 998776666653 257888999999999999999 999999999999999999976 36
Q ss_pred EEeccchhhcccCChhHH-hhcCceEEEEee---cCCCChhHHHHHHHHHHHhhccCCCCCCCCCCchhhHHhHHHHHHH
Q 008863 265 IVTNTVANALDSLNTTVI-SSMEGTLGIKSY---YSDDSSPYKEFSALFRRNFTSEYPEEDHFHPSIHALRAHDSIKIIT 340 (550)
Q Consensus 265 i~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~---~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~yDav~~~a 340 (550)
+..+.+... ... .... ...+|++....+ .....|..++|.++|+++|.. ...|+.+++.+|||+++++
T Consensus 226 i~~~~~~~~-~~~-~~~g~~~~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~------~~~p~~~a~~~yda~~~~~ 297 (364)
T 3lop_A 226 LGLSSIDPG-ILQ-KVAGLDAVRGYSLALVMPNPGKSVNPVIREFNRARAAVGAK------DVDLSFRAVEGFVAAKVLA 297 (364)
T ss_dssp EECTTSCHH-HHH-HHHCHHHHTTCEEEECSCCTTCTTSHHHHHHHHHHHHHTCT------TCCCCHHHHHHHHHHHHHH
T ss_pred EEeccCChH-HHH-HHhChhhcCCeEEEEEeCCCCCCCCHHHHHHHHHHHHhcCC------CCCCChHHHHHHHHHHHHH
Confidence 665554321 111 1122 456777765422 123458889999999887632 1167888999999999999
Q ss_pred HHHHhhccCCCCHHHHHHHHHhC-cccc-cceeEEEeCCCCCCCCceEEEEeeCCeeeE
Q 008863 341 EAIGRLNYNISSPEMLLRQMLSS-DFSG-LSGKIRFKDGELLNADTLRIVNVVGKKYKE 397 (550)
Q Consensus 341 ~Al~~~~~~~~~~~~l~~~l~~~-~~~G-~tG~i~f~~~g~~~~~~~~i~~~~~~~~~~ 397 (550)
+|+++++.. .+++.|+++|+++ +|+| .+|+++|++++++......|.+++++++.+
T Consensus 298 ~al~~ag~~-~~~~~v~~aL~~~~~~~~~~~g~i~f~~~~~~~~~~~~i~~~~~~~~~~ 355 (364)
T 3lop_A 298 EAIRRAGPK-PTREQVRHALTELRDYDVGGGFTVDFTDRSRPGSHYIELGVVGPNGLVI 355 (364)
T ss_dssp HHHHHHCSS-CCHHHHHHHHHTCEEEESSTTCEEECSSTTSCSCCCCEEEEECTTSCEE
T ss_pred HHHHHhCCC-CCHHHHHHHHHhcCCccCCCCeeeecCCCCcCCcceEEEEEEcCCCccc
Confidence 999999742 4999999999999 7999 999999998887766788888888766543
No 33
>3sg0_A Extracellular ligand-binding receptor; structural genomics, PSI-biology; HET: 173; 1.20A {Rhodopseudomonas palustris} PDB: 4dqd_A*
Probab=100.00 E-value=1.3e-35 Score=296.86 Aligned_cols=338 Identities=18% Similarity=0.252 Sum_probs=275.8
Q ss_pred CcEEEEEEEecCC---ccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEcCCChHH
Q 008863 33 EVTKIGAIVDANS---QMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEE 109 (550)
Q Consensus 33 ~~i~IG~i~~~~~---~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~~ 109 (550)
++|+||+++|+++ ..|.....|+++|++++| |+++++++.|+++++..+.+.+++++.+++|.+||||.++..
T Consensus 26 ~~i~IG~~~p~sg~~~~~g~~~~~g~~~a~~~i~----G~~i~l~~~d~~~~~~~~~~~~~~l~~~~~v~~iig~~~s~~ 101 (386)
T 3sg0_A 26 AEIKIGITMSASGPGAALGQPQSKTVAALPKEIG----GEKVTYFALDDESDPTKAAQNARKLLSEEKVDVLIGSSLTPV 101 (386)
T ss_dssp CCEEEEEEECCSSTTHHHHHHHHHHGGGSCSEET----TEEEEEEEEECTTCHHHHHHHHHHHHHTSCCSEEECCSSHHH
T ss_pred CceEEEEEeccCCchhhhcHHHHHHHHHHHHHcC----CEEEEEEEecCCCCHHHHHHHHHHHHhhcCceEEECCCCchh
Confidence 5899999999984 356788899999999984 789999999999999999999999998779999999999999
Q ss_pred HHHHHHhhccCCccEEeccCCCCCCccc--CCCCCeEEEEecCcHHhHHHHHHHHHHcCCeEEEEEEEcCCCCCcchhHH
Q 008863 110 TAVVAEIASRVQVPILSFAAPAVTPLSM--SRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLA 187 (550)
Q Consensus 110 ~~~v~~~~~~~~iP~is~~~~~~~~~~~--~~~~~~~~~~~p~~~~~~~al~~~l~~~~w~~v~ii~~~~~~g~~~~~~~ 187 (550)
+.++.+++...++|+|++.++ ++... ...+|++||+.|++..++.++++++.++||+++++|++++.+| ....+
T Consensus 102 ~~~~~~~~~~~~ip~v~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~ia~i~~~~~~~--~~~~~ 177 (386)
T 3sg0_A 102 SLPLIDIAAEAKTPLMTMAAA--AILVAPMDERRKWVYKVVPNDDIMAEAIGKYIAKTGAKKVGYIGFSDAYG--EGYYK 177 (386)
T ss_dssp HHHHHHHHHHTTCCEEECCCC--GGGTCSCCTTGGGEEECSCCHHHHHHHHHHHHHHTTCCEEEEEEESSHHH--HHHHH
T ss_pred HHHHHHHHHhcCCeEEEecCC--CccccccCCCCCcEEecCCCcHHHHHHHHHHHHhcCCCEEEEEecCchHH--HHHHH
Confidence 999999999999999999887 55544 4567999999999999999999999999999999999998898 99999
Q ss_pred HHHHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcCCCeEEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEEe
Q 008863 188 LLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGLVGKDSVWIVT 267 (550)
Q Consensus 188 ~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~~ii~~~~~~~~~~~il~~a~~~g~~~~~~~~i~~ 267 (550)
.+++.+++.| +++.....++... .++...++++++.++++|++ .++...+..+++++++.|+.. .++..
T Consensus 178 ~~~~~l~~~g-~~v~~~~~~~~~~------~d~~~~~~~~~~~~~dav~~-~~~~~~a~~~~~~~~~~g~~~---~~~~~ 246 (386)
T 3sg0_A 178 VLAAAAPKLG-FELTTHEVYARSD------ASVTGQVLKIIATKPDAVFI-ASAGTPAVLPQKALRERGFKG---AIYQT 246 (386)
T ss_dssp HHHHHHHHHT-CEECCCEEECTTC------SCCHHHHHHHHHTCCSEEEE-ECCSGGGHHHHHHHHHTTCCS---EEECC
T ss_pred HHHHHHHHcC-CEEEEEEeeCCCC------CcHHHHHHHHHhcCCCEEEE-ecCcchHHHHHHHHHHcCCCC---cEEec
Confidence 9999999999 9987666565532 57888899999999999999 888888999999999999975 45655
Q ss_pred ccchhhcccCChhHHhhcCceEEEEeec------CCCC---hhHHHHHHHHHHHhhccCCCCCCCCCCchhhHHhHHHHH
Q 008863 268 NTVANALDSLNTTVISSMEGTLGIKSYY------SDDS---SPYKEFSALFRRNFTSEYPEEDHFHPSIHALRAHDSIKI 338 (550)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~------~~~~---~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~yDav~~ 338 (550)
..+... ... .......+|.+....+. +..+ +..++|.++|+++|.. ..|+.+++.+||++++
T Consensus 247 ~~~~~~-~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~-------~~p~~~~~~~yda~~~ 317 (386)
T 3sg0_A 247 HGVATE-EFI-KLGGKDVEGAIFAGEAFSGAEDMPADSPFRKVKARFVDAYKAANGG-------AAPTIFGVHLWDSMTL 317 (386)
T ss_dssp GGGCSH-HHH-HHHGGGGTTCEEEECHHHHGGGSCTTCHHHHHHHHHHHHHHHHTTT-------CCCCHHHHHHHHHHHH
T ss_pred cccCCH-HHH-HhhhhhcCCeEEecccccccccCCCCCcchHHHHHHHHHHHHHhCC-------CCCChhHHHHHHHHHH
Confidence 544321 111 11224567877655321 2222 3467888888887742 2567889999999999
Q ss_pred HHHHHHhhccC-----CCCHHHHHHHHHhC-cccccceeEEEeCCCCC--CCCceEEEEeeCCeeeEE
Q 008863 339 ITEAIGRLNYN-----ISSPEMLLRQMLSS-DFSGLSGKIRFKDGELL--NADTLRIVNVVGKKYKEL 398 (550)
Q Consensus 339 ~a~Al~~~~~~-----~~~~~~l~~~l~~~-~~~G~tG~i~f~~~g~~--~~~~~~i~~~~~~~~~~v 398 (550)
+++|++++... +.+++.++++|+++ +|+|++|+++|+.++++ .+..+.|+++++++|+.+
T Consensus 318 ~~~al~~a~~~~~~g~~~~~~~~~~al~~~~~~~g~~G~~~f~~~~~~g~~~~~~~i~~~~~G~~~~~ 385 (386)
T 3sg0_A 318 VENAIPAALKAAKPGTPEFRAAIRDQIEKSKDLALNNGLSNMTPDNHNGYDERSAFLIEIRDGAFRLK 385 (386)
T ss_dssp HHHHHHHHHHHCCTTSHHHHHHHHHHHTTCCSEEETTEEECCCSSCSSCCCGGGCEEEEEETTEEEEC
T ss_pred HHHHHHHhhhccCCCCcchHHHHHHHHHhccCccccceeEEECCCcCCCCCCCceEEEEEECCEEEec
Confidence 99999998421 12478999999999 89999999999876544 235689999999988754
No 34
>1pea_A Amidase operon; gene regulator, receptor, binding protein; 2.10A {Pseudomonas aeruginosa} SCOP: c.93.1.1 PDB: 1qo0_A 1qnl_A
Probab=100.00 E-value=1.8e-33 Score=280.89 Aligned_cols=345 Identities=13% Similarity=0.147 Sum_probs=277.5
Q ss_pred CCcEEEEEEEecCC---ccchhHHHHHHHHHHHHhcCC--CCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEcCCC
Q 008863 32 EEVTKIGAIVDANS---QMGKQAITAMKIAVQNFNSDS--RNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMET 106 (550)
Q Consensus 32 ~~~i~IG~i~~~~~---~~g~~~~~a~~~Av~~iN~~~--~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG~~~ 106 (550)
.++++||+++|.++ ..+.....|+++|++++|+++ .|++|++++.|+++++..+.+.+++++.+++|.+|||+.+
T Consensus 5 ~~~~~IG~~~p~sg~~~~~~~~~~~g~~~a~~~~N~~ggi~G~~l~l~~~d~~~~~~~~~~~~~~l~~~~~v~~iig~~~ 84 (385)
T 1pea_A 5 QERPLIGLLFSETGVTADIERSQRYGALLAVEQLNREGGVGGRPIETLSQDPGGDPDRYRLCAEDFIRNRGVRFLVGCYM 84 (385)
T ss_dssp ---CEEEEECCSSSTTHHHHHHHHHHHHHHHHHHHTTTTBTTBCCEEEEECCTTCHHHHHHHHHHHHHTTCCCEEEECCS
T ss_pred CCCeEEEEEECCCCcchhcCHHHHHHHHHHHHHhccccCCCCeEEEEEEeCCCCCHHHHHHHHHHHHhhCCcEEEECCCc
Confidence 46899999999874 356788899999999999987 4889999999999999999999999997679999999998
Q ss_pred hHHHHHHHHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHHcCCeEEEEEEEcCCCCCcchhH
Q 008863 107 WEETAVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKL 186 (550)
Q Consensus 107 s~~~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~~~w~~v~ii~~~~~~g~~~~~~ 186 (550)
+..+.++.+++...++|+|++... .. ...++++|++.+++..++.++++++.+.+|+++++|+.++.++ ....
T Consensus 85 s~~~~~~~~~~~~~~iP~v~~~~~--~~---~~~~~~~~~v~~~~~~~~~~~~~~l~~~g~~~ia~i~~~~~~~--~~~~ 157 (385)
T 1pea_A 85 SHTRKAVMPVVERADALLCYPTPY--EG---FEYSPNIVYGGPAPNQNSAPLAAYLIRHYGERVVFIGSDYIYP--RESN 157 (385)
T ss_dssp HHHHHHHHHHHHHTTCEEEECSCC--CC---CCCCTTEEECSCCGGGTHHHHHHHHHTTTCSEEEEEEESSHHH--HHHH
T ss_pred hHHHHHHHHHHHhcCceEEECCcc--cC---ccCCCCEEEecCChHHhHHHHHHHHHHccCcEEEEEeCCChHH--HHHH
Confidence 888888889999999999998764 21 1235789999999999999999999999999999999987788 8888
Q ss_pred HHHHHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcCCCeEEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEE
Q 008863 187 ALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGLVGKDSVWIV 266 (550)
Q Consensus 187 ~~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~~ii~~~~~~~~~~~il~~a~~~g~~~~~~~~i~ 266 (550)
+.+++.+++.| +++.....++... ...++...++++++.++++|++ .++...+..++++++++|+.++.+.++.
T Consensus 158 ~~~~~~l~~~G-~~v~~~~~~~~~~----~~~d~~~~~~~l~~~~pdaI~~-~~~~~~a~~~~~~~~~~G~~~~~~~~~~ 231 (385)
T 1pea_A 158 HVMRHLYRQHG-GTVLEEIYIPLYP----SDDDLQRAVERIYQARADVVFS-TVVGTGTAELYRAIARRYGDGRRPPIAS 231 (385)
T ss_dssp HHHHHHHHHTT-CEEEEEEEECSSC----CHHHHHHHHHHHHHHTCSEEEE-ECCTHHHHHHHHHHHHHHCSSCCCCEEE
T ss_pred HHHHHHHHHcC-CEEEEEEeecCCC----CcchHHHHHHHHHHCCCCEEEE-ecccccHHHHHHHHHHcCCCcCCceEEe
Confidence 99999999999 9987655454311 3478889999998889999998 8878889999999999999865444444
Q ss_pred eccchh-hcccCChhHHhhcCceEEEEeecC-CCChhHHHHHHHHHHHhhccCCCCCCCCCCchhhHHhHHHHHHHHHHH
Q 008863 267 TNTVAN-ALDSLNTTVISSMEGTLGIKSYYS-DDSSPYKEFSALFRRNFTSEYPEEDHFHPSIHALRAHDSIKIITEAIG 344 (550)
Q Consensus 267 ~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~yDav~~~a~Al~ 344 (550)
. .|.. .+.... .+..+|++...++.. ..+|..++|.++|+++|.. ...++.+++.+|||++++++|++
T Consensus 232 ~-~~~~~~~~~~~---~~~~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~g~------~~~~~~~~~~~yda~~~~~~Al~ 301 (385)
T 1pea_A 232 L-TTSEAEVAKME---SDVAEGQVVVAPYFSSIDTPASRAFVQACHGFFPE------NATITAWAEAAYWQTLLLGRAAQ 301 (385)
T ss_dssp S-SCCHHHHTTSC---HHHHTTCEEEESCCTTCSSHHHHHHHHHHHTTSCT------TCCCCHHHHHHHHHHHHHHHHHH
T ss_pred c-ccchHHHHhcC---chhhCCeEEecccccccCCHHHHHHHHHHHHHhCC------CCCCChHHHHHHHHHHHHHHHHH
Confidence 3 3332 111111 135678877765543 3457788888888776532 12467789999999999999999
Q ss_pred hhccCCCCHHHHHHHHHhCcccccceeEEEeCCCCCCCCceEEEEe-eCCeeeEEEEE
Q 008863 345 RLNYNISSPEMLLRQMLSSDFSGLSGKIRFKDGELLNADTLRIVNV-VGKKYKELDFW 401 (550)
Q Consensus 345 ~~~~~~~~~~~l~~~l~~~~~~G~tG~i~f~~~g~~~~~~~~i~~~-~~~~~~~vG~w 401 (550)
+++.. +++.++++|++++|+|++|+++|+++++.....+.|.++ ++++|+.|...
T Consensus 302 ~ag~~--~~~~l~~al~~~~~~g~~G~i~f~~~~~~~~~~~~i~~~~~~g~~~~v~~~ 357 (385)
T 1pea_A 302 AAGNW--RVEDVQRHLYDIDIDAPQGPVRVERQNNHSRLSSRIAEIDARGVFQVRWQS 357 (385)
T ss_dssp HHTSC--CHHHHHHHHTTCCEEETTEEEEECTTTSCEEBCCEEEEECTTSCEEEEEEC
T ss_pred HhCCC--CHHHHHHHHhhCcccCCCCCeEEcCCCCccccceEEEEEcCCCcEEEeecC
Confidence 99876 899999999999999999999999865554578889999 78888887654
No 35
>3snr_A Extracellular ligand-binding receptor; structural genomics, APC102214, PSI-biology, midwest center structural genomics, MCSG; HET: MSE TYR PHE; 1.49A {Rhodopseudomonas palustris} PDB: 3uk0_A* 3t23_A* 3ukj_A* 4eyo_A* 4eyq_A* 3tx6_A* 4f8j_A* 4fb4_A*
Probab=100.00 E-value=7.9e-34 Score=281.26 Aligned_cols=336 Identities=19% Similarity=0.237 Sum_probs=274.8
Q ss_pred CcEEEEEEEecCC---ccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEcCCChHH
Q 008863 33 EVTKIGAIVDANS---QMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEE 109 (550)
Q Consensus 33 ~~i~IG~i~~~~~---~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~~ 109 (550)
++|+||+++|+++ ..|.....|+++|++++| |+++++++.|+++++..+.+.+++++.+++|.+||||.++..
T Consensus 6 ~~i~IG~~~p~sg~~~~~g~~~~~g~~~a~~~i~----g~~i~l~~~d~~~~~~~~~~~~~~l~~~~~v~~iig~~~s~~ 81 (362)
T 3snr_A 6 NEITVGISVTTTGPAAALGIPERNALEFVVKEIS----GHPIKIIVLDDGGDPTAATTNARRFVTESKADVIMGSSVTPP 81 (362)
T ss_dssp CCEEEEEEECCSSTTHHHHHHHHHGGGGSCSEET----TEEEEEEEEECTTCHHHHHHHHHHHHHTSCCSEEEECSSHHH
T ss_pred CCeEEEEEecccCchhhcCHHHHHHHHHHHHHhC----CeEEEEEEecCCCCHHHHHHHHHHHHhccCceEEEcCCCcHH
Confidence 5899999999984 356678899999999984 789999999999999999999999998669999999999999
Q ss_pred HHHHHHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHHcCCeEEEEEEEcCCCCCcchhHHHH
Q 008863 110 TAVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALL 189 (550)
Q Consensus 110 ~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~~~w~~v~ii~~~~~~g~~~~~~~~l 189 (550)
+.++.+++...++|+|++.++ +. ....++++||+.|++..++.++++++.++||+++++|++++.++ ....+.+
T Consensus 82 ~~~~~~~~~~~~ip~v~~~~~---~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~ia~i~~~~~~~--~~~~~~~ 155 (362)
T 3snr_A 82 SVAISNVANEAQIPHIALAPL---PI-TPERAKWSVVMPQPIPIMGKVLYEHMKKNNVKTVGYIGYSDSYG--DLWFNDL 155 (362)
T ss_dssp HHHHHHHHHHHTCCEEESSCC---CC-CTTTTTTEEECSCCHHHHHHHHHHHHHHTTCCEEEEEEESSHHH--HHHHHHH
T ss_pred HHHHHHHHHHcCccEEEecCC---cc-ccCCCCcEEecCCChHHHHHHHHHHHHhcCCCEEEEEecCchHH--HHHHHHH
Confidence 999999999999999998865 22 34567899999999999999999999999999999999988888 8899999
Q ss_pred HHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcCCCeEEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEEecc
Q 008863 190 AEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGLVGKDSVWIVTNT 269 (550)
Q Consensus 190 ~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~~ii~~~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~ 269 (550)
++.+++.| +++.....++... .++...++++++.++++|++ .+....+..+++++++.|+.. .++....
T Consensus 156 ~~~l~~~g-~~v~~~~~~~~~~------~~~~~~~~~l~~~~~dav~~-~~~~~~a~~~~~~~~~~g~~~---p~i~~~g 224 (362)
T 3snr_A 156 KKQGEAMG-LKIVGEERFARPD------TSVAGQALKLVAANPDAILV-GASGTAAALPQTTLRERGYNG---LIYQTHG 224 (362)
T ss_dssp HHHHHHTT-CEEEEEEEECTTC------SCCHHHHHHHHHHCCSEEEE-ECCHHHHHHHHHHHHHTTCCS---EEEECGG
T ss_pred HHHHHHcC-CEEEEEeecCCCC------CCHHHHHHHHHhcCCCEEEE-ecCcchHHHHHHHHHHcCCCc---cEEeccC
Confidence 99999999 9988776666532 57788888998889999999 888999999999999999976 3455554
Q ss_pred chhhcccCChhHHhhcCceEEEEeec------CC---CChhHHHHHHHHHHHhhccCCCCCCCCCCchhhHHhHHHHHHH
Q 008863 270 VANALDSLNTTVISSMEGTLGIKSYY------SD---DSSPYKEFSALFRRNFTSEYPEEDHFHPSIHALRAHDSIKIIT 340 (550)
Q Consensus 270 ~~~~~~~~~~~~~~~~~g~~~~~~~~------~~---~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~yDav~~~a 340 (550)
+... ... .......+|.+....+. +. ..+..++|.++|+++|.. ..|+.+++.+|||+++++
T Consensus 225 ~~~~-~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~-------~~p~~~~~~~yda~~~~~ 295 (362)
T 3snr_A 225 AASM-DFI-RIAGKSAEGVLMASGPVMDPEGQDDTALTKKPGMALVKVYEEKYGP-------SSRSQFAGHSYDAFKVLE 295 (362)
T ss_dssp GCSH-HHH-HHHGGGGTTCEEEECGGGCSTTSCTTCTTHHHHHHHHHHHHHHHCT-------TCCCHHHHHHHHHHHHHH
T ss_pred cCcH-HHH-HHhHHHhCCCEEecccccccccCCCcCcccHHHHHHHHHHHHHhCC-------CCCCchhHhHHHHHHHHH
Confidence 4321 111 11234567877665321 11 124678899999888742 256889999999999999
Q ss_pred HHHHhhccC-----CCCHHHHHHHHHhC-cccccceeEEEeCCCCC--CCCceEEEEeeCCeeeEE
Q 008863 341 EAIGRLNYN-----ISSPEMLLRQMLSS-DFSGLSGKIRFKDGELL--NADTLRIVNVVGKKYKEL 398 (550)
Q Consensus 341 ~Al~~~~~~-----~~~~~~l~~~l~~~-~~~G~tG~i~f~~~g~~--~~~~~~i~~~~~~~~~~v 398 (550)
+|++++... +.++..++++|+++ +|+|++|+++|++++++ .+..+.|+++++++|+.|
T Consensus 296 ~al~~a~~~~~~g~~~~~~~~~~al~~~~~~~g~~G~~~f~~~~~~g~~~~~~~i~~~~~G~~~~v 361 (362)
T 3snr_A 296 RVVPVALKKAKPGTQEFREALREAFLTEKDIAASQGVYNFTETDRYGLDDRSRILLTVKNGKYVIV 361 (362)
T ss_dssp HHHHHHHHHCCTTSHHHHHHHHHHHHHCCCEECSSCEECCCSSCSSCCCGGGCEEEEEETTEEEEC
T ss_pred HHHHHhhccccCCCcchHHHHHHHHHhcCCcccceeeEEeCCCCCCCCCCCCeEEEEEECCEEEEc
Confidence 999998532 13478999999999 89999999999976544 246789999999988754
No 36
>3ckm_A YRAM (HI1655), LPOA; periplasmic-binding protein, lipoprotein, unliganded, biosynthetic protein; 1.35A {Haemophilus influenzae} SCOP: c.93.1.1
Probab=99.96 E-value=4.7e-28 Score=235.58 Aligned_cols=313 Identities=13% Similarity=0.088 Sum_probs=235.4
Q ss_pred EEEEEEEecCC---ccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEcCCChHHHH
Q 008863 35 TKIGAIVDANS---QMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEETA 111 (550)
Q Consensus 35 i~IG~i~~~~~---~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~~~~ 111 (550)
+|||+++|+|+ ..|...+.|+++|++ +.+++++++|++++|..+ +.+++.+++|.+||||.+|..+.
T Consensus 3 ~kIG~l~PlSG~~a~~G~~~~~g~~lA~~-------g~~i~l~~~D~~~~~~~a---a~~~~~~~~v~~iiGp~~s~~~~ 72 (327)
T 3ckm_A 3 SQIGLLLPLSGDGQILGTTIQSGFNDAKG-------NSTIPVQVFDTSMNSVQD---IIAQAKQAGIKTLVGPLLKQNLD 72 (327)
T ss_dssp CCEEEEECCSSTTHHHHHHHHHHHHHHHT-------TCCSCEEEEETTTSCHHH---HHHHHHHTTCCEEECCCSHHHHH
T ss_pred EEEEEEECCCCchHHHHHHHHHHHHHhCC-------CCCceEEEEeCCCCHHHH---HHHHHHHcCCeEEEEccccccch
Confidence 79999999993 567888899998863 567889999999998655 34555568999999999988877
Q ss_pred HHHHh-hccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHHcCCeEEEEEEEcCCCCCcchhHHHHH
Q 008863 112 VVAEI-ASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLA 190 (550)
Q Consensus 112 ~v~~~-~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~~~w~~v~ii~~~~~~g~~~~~~~~l~ 190 (550)
+++.. +....+|+++.+++ +.. ...+++|++.+++..++.++++++...+++++++|+++++|| ....+.|+
T Consensus 73 a~~~~~~~~~~v~~~~~~~~---~~~--~~~~~~f~~~~~~~~~~~~~a~~~~~~g~k~~~ii~~~~~yg--~~~~~~f~ 145 (327)
T 3ckm_A 73 VILADPAQIQGMDVLALNAT---PNS--RAIPQLCYYGLSPEDEAESAANKMWNDGVRNPLVAMPQNDLG--QRVGNAFN 145 (327)
T ss_dssp HHHHCGGGGTTCEEEESCCC---TTC--CCCTTEEECCCCHHHHHHHHHHHHHHTTCCSCEEEEESSHHH--HHHHHHHH
T ss_pred hhHHHHHhccCceEeccCcC---ccc--ccCCCeEEEecChHHHHHHHHHHHHhcCCeeEEEEecCChHH--HHHHHHHH
Confidence 76654 45566777665544 222 234789999999999999999999999999999999999999 99999999
Q ss_pred HHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcCCCeEEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEEeccc
Q 008863 191 EALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGLVGKDSVWIVTNTV 270 (550)
Q Consensus 191 ~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~~ii~~~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~~ 270 (550)
+.+++.| ++|+....++.. +....+.+++..++|+|++ .....++..+++++++.|+.. .++.++.+
T Consensus 146 ~~~~~~G-g~vv~~~~~~~~--------~~~~~~~~~~~~~~dai~~-~~~~~~~~~i~~q~~~~g~~~---~~~~~~~~ 212 (327)
T 3ckm_A 146 VRWQQLA-GTDANIRYYNLP--------ADVTYFVQENNSNTTALYA-VASPTELAEMKGYLTNIVPNL---AIYASSRA 212 (327)
T ss_dssp HHHHHHH-SSCCEEEEESST--------THHHHHHHHSCTTCCEEEE-CCCHHHHHHHHHHHTTTCTTC---EEEECGGG
T ss_pred HHHHHCC-CeEEEEEECCCC--------chhhHHHHHhccCCcEEEE-EcCHHHHHHHHHHHHhhhccC---CEEeeecc
Confidence 9999999 999888877653 2335567788889999999 999999999999999999865 55665554
Q ss_pred hhhcccCChhHHhhcCceEEEEe-ec-CCCChhHHHHHHHHHHHhhccCCCCCCCCCCchhhHHhHHHHHHHHHHHhhcc
Q 008863 271 ANALDSLNTTVISSMEGTLGIKS-YY-SDDSSPYKEFSALFRRNFTSEYPEEDHFHPSIHALRAHDSIKIITEAIGRLNY 348 (550)
Q Consensus 271 ~~~~~~~~~~~~~~~~g~~~~~~-~~-~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~yDav~~~a~Al~~~~~ 348 (550)
...............+|.+.... +. ....+....|.++|++.|. +....+++|||+.++.++.+..
T Consensus 213 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~~~~~~~----------~~~~~AlgyDA~~l~~~l~~~~-- 280 (327)
T 3ckm_A 213 SASATNTNTDFIAQMNGVQFSDIPFFKDTNSPQYQKLAKSTGGEYQ----------LMRLYAMGADAWLLINQFNELR-- 280 (327)
T ss_dssp CCHHHHTCHHHHHHTTTCEEEECGGGGCCCSHHHHHHHHHTTTCHH----------HHHHHHHHHHHHHHHHTHHHHH--
T ss_pred ccccchhcchhhhhcCCeEEEcccccCCCCCHHHHHHHHHHHhhcC----------CCchHHHHHHHHHHHHHHHHhc--
Confidence 32211111222234566665543 22 2334667666666554442 2236788999998876544322
Q ss_pred CCCCHHHHHHHHHhCcccccceeEEEeCCCCCCCCceEEEEeeCCeeeEEEE
Q 008863 349 NISSPEMLLRQMLSSDFSGLSGKIRFKDGELLNADTLRIVNVVGKKYKELDF 400 (550)
Q Consensus 349 ~~~~~~~l~~~l~~~~~~G~tG~i~f~~~g~~~~~~~~i~~~~~~~~~~vG~ 400 (550)
.+....|.|+||.++||++|+. ...+.+.+++++++++|..
T Consensus 281 ----------~~~~~~f~G~tG~i~fd~~G~~-~r~l~~~~~~~G~~vpv~d 321 (327)
T 3ckm_A 281 ----------QVPGYRLSGLTGILSADTNCNV-ERDMTWYQYQDGAIVPVVD 321 (327)
T ss_dssp ----------HSTTCCEEETTEEEEECTTCBE-EEECEEEEEETTEEEECC-
T ss_pred ----------CCCCCCceeceEEEEECCCCCC-ccccEEEEEECCEEEEccc
Confidence 2334679999999999999975 4788899999999998864
No 37
>2h4a_A YRAM (HI1655); perplasmic binding protein, lipoprotein; 1.35A {Haemophilus influenzae} PDB: 3ckm_A
Probab=99.96 E-value=4e-28 Score=233.31 Aligned_cols=309 Identities=13% Similarity=0.106 Sum_probs=236.8
Q ss_pred EEEEEEecC---CccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEcCCChHHHHH
Q 008863 36 KIGAIVDAN---SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEETAV 112 (550)
Q Consensus 36 ~IG~i~~~~---~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~~~~~ 112 (550)
|||+++|+| +..|.....|+++|. .|.+++++++|+.+++ +...+.+++. ++|.+||||.++..+.+
T Consensus 2 kIG~llplSG~~a~~G~~~~~G~~lA~-------~G~~i~l~~~D~~~~~--a~~~~~~l~~-~~v~~IiGp~~s~~~~a 71 (325)
T 2h4a_A 2 QIGLLLPLSGDGQILGTTIQSGFNDAK-------GNSTIPVQVFDTSMNS--VQDIIAQAKQ-AGIKTLVGPLLKQNLDV 71 (325)
T ss_dssp CEEEEECCSSTTHHHHHHHHHHHHHHH-------TTCCSCEEEEETTTSC--HHHHHHHHHH-TTCCEEECCCSHHHHHH
T ss_pred cEEEEECCCCccHHHHHHHHHHHHHhc-------cCCCceEEEEECCCCh--HHHHHHHHHH-CCCCEEEeeCCHHHHHH
Confidence 799999999 457889999999986 3789999999999987 5666777774 79999999999999999
Q ss_pred HHHhh-ccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHHcCCeEEEEEEEcCCCCCcchhHHHHHH
Q 008863 113 VAEIA-SRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLAE 191 (550)
Q Consensus 113 v~~~~-~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~~~w~~v~ii~~~~~~g~~~~~~~~l~~ 191 (550)
+++.+ ...++|+|+++++ +. .....+.|+||+.| ..++.++++++...|.+++++|+++++|| +...+.|++
T Consensus 72 ~~~~~~~~~~vp~i~~~~~--~~-~~~~~~~~~f~~~~--~~~~~~~a~~a~~~g~k~vail~~~~~yG--~~~~~~F~~ 144 (325)
T 2h4a_A 72 ILADPAQIQGMDVLALNAT--PN-SRAIPQLCYYGLSP--EDEAESAANKMWNDGVRNPLVAMPQNDLG--QRVGNAFNV 144 (325)
T ss_dssp HHHCGGGGTTCEEEESCCC--SS-CCCCTTEEECCCCH--HHHHHHHHHHHHHTTCCSCEEEEESSHHH--HHHHHHHHH
T ss_pred HHhhhhccCCCcEEECCCC--cc-ccCCCCeEEEECCH--HHHHHHHHHHHHHcCCCeEEEEEcCCcHH--HHHHHHHHH
Confidence 99998 7789999998776 32 22233456666554 45789999999888999999999999999 999999999
Q ss_pred HHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcCCCeEEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEEeccch
Q 008863 192 ALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGLVGKDSVWIVTNTVA 271 (550)
Q Consensus 192 ~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~~ii~~~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~~~ 271 (550)
.+++.| ++|+..+.+.. . .|+...++++ ..++|+|++ .+....+..+.++++..|... ..+.++.+.
T Consensus 145 ~~~~~G-g~vv~~~~y~~------~-~d~~~~l~~i-~~~pDaV~~-~~~~~~~~~i~~~~~~~g~~~---pl~~~~~~~ 211 (325)
T 2h4a_A 145 RWQQLA-GTDANIRYYNL------P-ADVTYFVQEN-NSNTTALYA-VASPTELAEXKGYLTNIVPNL---AIYASSRAS 211 (325)
T ss_dssp HHHHHH-SSCCEEEEESS------T-THHHHHHHHS-TTCCCEEEE-CCCHHHHHHHHHHHTTTCTTC---EEEECGGGC
T ss_pred HHHHcC-CCcceeEecCC------H-HHHHHHHHhc-CCCCCEEEE-eCCHHHHhhhhhhHhhcCCCC---CEEEecccc
Confidence 999999 99988877764 2 5899999998 469999999 999999988888888776543 456666655
Q ss_pred --hhcccCChhHHhhcCceEEEE-eecCC-CChhHHHHHHHHHHHhhccCCCCCCCCCCchhhHHhHHHHHHHHHHHhhc
Q 008863 272 --NALDSLNTTVISSMEGTLGIK-SYYSD-DSSPYKEFSALFRRNFTSEYPEEDHFHPSIHALRAHDSIKIITEAIGRLN 347 (550)
Q Consensus 272 --~~~~~~~~~~~~~~~g~~~~~-~~~~~-~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~yDav~~~a~Al~~~~ 347 (550)
+. . ........++|++... ++... ..+..++|.+.|...+ .+...++++|||+.++.+. .++
T Consensus 212 ~~s~-~-~~~~~~~~~~Gv~f~~~p~~~~~~~~~~~~f~~~~~~~~----------~~~rl~AlgyDA~~l~~~l-~~l- 277 (325)
T 2h4a_A 212 ASAT-N-TNTDFIAQMNGVQFSDIPFFKDTNSPQYQKLAKSTGGEY----------QLMRLYAMGADAWLLINQF-NEL- 277 (325)
T ss_dssp CHHH-H-TCHHHHHHTTTCEEEECGGGSCCCSHHHHHHHHHTTTCH----------HHHHHHHHHHHHHHHHHTH-HHH-
T ss_pred ccCC-C-CCchhhhhcCCcEEEccccccCCCcHHHHHHHhccCCCc----------chHHHHHHHHHHHHHHHHH-HHH-
Confidence 21 1 1223346788987655 34333 3355555554432211 2445678999999987664 221
Q ss_pred cCCCCHHHHHHHHHhCcccccceeEEEeCCCCCCCCceEEEEeeCCeeeEEE
Q 008863 348 YNISSPEMLLRQMLSSDFSGLSGKIRFKDGELLNADTLRIVNVVGKKYKELD 399 (550)
Q Consensus 348 ~~~~~~~~l~~~l~~~~~~G~tG~i~f~~~g~~~~~~~~i~~~~~~~~~~vG 399 (550)
+.+....|.|+||.++|+++|+. ...+.+.++++++++.|-
T Consensus 278 ----------~~~~~~~~~G~tG~l~~~~~g~~-~R~l~~~~~~~G~~~~~~ 318 (325)
T 2h4a_A 278 ----------RQVPGYRLSGLTGILSADTNCNV-ERDMTWYQYQDGAIVPVV 318 (325)
T ss_dssp ----------HHSTTCCEEETTEEEEECTTCBE-EEECEEEEEETTEEEECC
T ss_pred ----------hhCCCCeeccCceeEEECCCCeE-EEeechhhccCCeEEEee
Confidence 11334689999999999999887 478999999999988763
No 38
>1pb7_A N-methyl-D-aspartate receptor subunit 1; ligand binding receptor, NR1, ligand binding protein; 1.35A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 1pbq_A* 1y1m_A 1y1z_A 1y20_A 2a5t_A* 1pb8_A 1pb9_A
Probab=99.37 E-value=2.3e-13 Score=129.43 Aligned_cols=91 Identities=14% Similarity=0.221 Sum_probs=70.9
Q ss_pred CCeEecccCcccccccEEEecCCCCCC-C---------------------------CCCCcccccchHHHHHHHHHhCCC
Q 008863 453 EPMRIGVPTRTFFEKFVVIKDDPLNGN-S---------------------------NDKNLRYDGFSIELFRLVVDHLNY 504 (550)
Q Consensus 453 ~~~~i~~~~~~~~~pfv~~~~~~~~~~-~---------------------------~~~~~~~~GfciDll~~la~~l~f 504 (550)
++|||++.++ +||||.+.+.+.+. . -+.+.+++|||+||+++|++.+||
T Consensus 4 ~~l~v~t~~~---~P~v~~~~~~~~~~c~~~~~~~~~~~~~~l~vg~~~~~~P~~~~~~~g~~~G~~vDll~~ia~~lg~ 80 (292)
T 1pb7_A 4 TRLKIVTIHQ---EPFVYVKPTMSDGTCKEEFTVNGDPVKKVICTGPNDTSPGSPRHTVPQCCYGFCIDLLIKLARTMNF 80 (292)
T ss_dssp CCEEEEECCB---TTTBEEEECCTTSSCCCCBCTTSCBCCCEEEEEEC--------CEEEEEEESHHHHHHHHHHHHHTC
T ss_pred cEEEEEEEee---CCeEEEecCCCCCccccccccccccccceeecccCCCCCCccccccccCcceeHHHHHHHHHHHcCc
Confidence 5677777655 79999987542110 0 001235899999999999999999
Q ss_pred CCCeEEEec-----------C----CChHHHHHhhhcccccEEeeceeeeeeeeeEEEe
Q 008863 505 DLPYEFVPH-----------D----GVYDDLINGVYDKVNYFNYHDKLLFKKKKRLCLV 548 (550)
Q Consensus 505 ~~~~~~~~~-----------~----g~w~Gmi~el~~~~ad~a~~~~ti~~~r~~~~~~ 548 (550)
+ |+++++ + +.|++|+++|.+|++||+++++++|++|++++..
T Consensus 81 ~--~~~~~~~d~~~g~~~~~~~~~~~~w~~~~~~l~~g~~D~~~~~~~~t~~R~~~~~f 137 (292)
T 1pb7_A 81 T--YEVHLVADGKFGTQERVNNSNKKEWNGMMGELLSGQADMIVAPLTINNERAQYIEF 137 (292)
T ss_dssp C--EEEEECTTCCCCCEEECTTSSCEEECHHHHHHHHTSCSEECSSCBCCHHHHTTEEE
T ss_pred e--EEEEEecCCcccccccccccccCcHHHHHHHHHcCCcCEEEeeeEecHHHhcceEe
Confidence 9 666664 2 4899999999999999999999999999987753
No 39
>2rc8_A Glutamate [NMDA] receptor subunit 3A; membrane protein, cell junction, glycoprotein, ION transport channel, magnesium; 1.45A {Rattus norvegicus} PDB: 2rc7_A 2rc9_A 2rca_A 2rcb_A
Probab=99.23 E-value=1.9e-12 Score=123.31 Aligned_cols=60 Identities=12% Similarity=0.317 Sum_probs=53.7
Q ss_pred ccccchHHHHHHHHHhCCCCCCeEEEec---------CCChHHHHHhhhcccccEEeeceeeeeeeeeEEE
Q 008863 486 RYDGFSIELFRLVVDHLNYDLPYEFVPH---------DGVYDDLINGVYDKVNYFNYHDKLLFKKKKRLCL 547 (550)
Q Consensus 486 ~~~GfciDll~~la~~l~f~~~~~~~~~---------~g~w~Gmi~el~~~~ad~a~~~~ti~~~r~~~~~ 547 (550)
+++|||+||+++|++.+||+ |+++++ ++.|++|+++|.+|++||+++++++|.+|++.+.
T Consensus 67 ~~~G~~vdll~~ia~~lg~~--~~~~~~~~~~~g~~~~~~w~~~~~~l~~g~~D~~~~~~~~t~eR~~~~~ 135 (294)
T 2rc8_A 67 CCYGYCIDLLEQLAEDMNFD--FDLYIVGDGKYGAWKNGHWTGLVGDLLSGTANMAVTSFSINTARSQVID 135 (294)
T ss_dssp EEESHHHHHHHHHHHHHTEE--EEEEECTTCCCCCEETTEECHHHHHHHHTSCSEECSSCBCCHHHHTTSE
T ss_pred CceEEhHHHHHHHHHHcCCc--EEEEECCCCcccccCCCCHHHHHHHHHCCCcCEEEeccccCHhHhceEE
Confidence 37899999999999999999 666543 5689999999999999999999999999998764
No 40
>2a5s_A N-methyl-D-aspartate receptor nmdar2A subunit, NMDA receptor nmdar2A; protein-ligand complex, metal transport,membrane protein; HET: GLU; 1.70A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 2a5t_B* 3oen_A* 3oel_A* 3oem_A* 3oek_A*
Probab=99.20 E-value=7.5e-12 Score=118.50 Aligned_cols=61 Identities=11% Similarity=0.297 Sum_probs=54.8
Q ss_pred ccccchHHHHHHHHHhCCCCCCeEEEec---------CCChHHHHHhhhcccccEEeeceeeeeeeeeEEEe
Q 008863 486 RYDGFSIELFRLVVDHLNYDLPYEFVPH---------DGVYDDLINGVYDKVNYFNYHDKLLFKKKKRLCLV 548 (550)
Q Consensus 486 ~~~GfciDll~~la~~l~f~~~~~~~~~---------~g~w~Gmi~el~~~~ad~a~~~~ti~~~r~~~~~~ 548 (550)
+++|||+||+++|++.+||+ |+++++ ++.|++++++|.+|++|++++++++|.+|++.+..
T Consensus 56 ~~~G~~~dl~~~i~~~lg~~--~~~~~~~~~~~g~~~~~~~~~~~~~l~~g~~D~~~~~~~~t~~R~~~~~f 125 (284)
T 2a5s_A 56 CCKGFCIDILKKLSRTVKFT--YDLYLVTNGKHGKKVNNVWNGMIGEVVYQRAVMAVGSLTINEERSEVVDF 125 (284)
T ss_dssp EEESHHHHHHHHHHHHHTCC--EEEEECCSSSSCCEETTEECHHHHHHHTTSCSEECSSCBCCHHHHTTEEE
T ss_pred eeeEEhHHHHHHHHHHCCCC--EEEEEccCCccCcccCCCHHHHHHHHhcCCcCEEEEEEEEeccccceEEe
Confidence 78999999999999999999 666543 56899999999999999999999999999987653
No 41
>3g3k_A Glutamate receptor, ionotropic kainate 2; membrane protein, cell junction, cell membrane, glycoprotein, ION transport, ionic channel, membrane; HET: GLU IPA; 1.24A {Rattus norvegicus} PDB: 3g3j_A* 3g3i_A* 2i0b_A* 3g3h_A* 3g3g_A* 3g3f_A* 1s7y_A* 1s9t_A* 1sd3_A* 1tt1_A* 1s50_A* 2xxr_A* 2xxt_A* 2xxx_A* 2xxw_A* 2xxy_A* 2xxu_A* 2xxv_A* 3qxm_A* 2i0c_A* ...
Probab=99.01 E-value=1.5e-10 Score=107.79 Aligned_cols=91 Identities=15% Similarity=0.303 Sum_probs=71.8
Q ss_pred CCCeEecccCcccccccEEEecCCCCCCCCCCCcccccchHHHHHHHHHhCCCCCCeEEEec---------CCChHHHHH
Q 008863 452 QEPMRIGVPTRTFFEKFVVIKDDPLNGNSNDKNLRYDGFSIELFRLVVDHLNYDLPYEFVPH---------DGVYDDLIN 522 (550)
Q Consensus 452 ~~~~~i~~~~~~~~~pfv~~~~~~~~~~~~~~~~~~~GfciDll~~la~~l~f~~~~~~~~~---------~g~w~Gmi~ 522 (550)
+++|||++... +||.+...+... . +|+.++.||++||+++|++.+|++++|.++|+ ++.|++++.
T Consensus 3 ~~~l~v~~~~~---~P~~~~~~~~~~-~--~~~g~~~G~~vdl~~~ia~~lg~~~~~~~~p~~~~g~~~~~~~~~~~~~~ 76 (259)
T 3g3k_A 3 NRSLIVTTILE---EPYVLFKKSDKP-L--YGNDRFEGYCIDLLRELSTHLGFTYEIRLVEDGKYGAQDDVNGQWNGMVR 76 (259)
T ss_dssp CCCEEEEECCB---TTTBEECCCSSC-C--CGGGGEESHHHHHHHHHHHHHTCCEEEEECTTCCCCCBCTTTCCBCHHHH
T ss_pred CcEEEEEEecC---CCeEEEeecccc-c--CCCceeeeEHHHHHHHHHHHcCCeEEEEECCCCCcCcccCCCCcchHHHH
Confidence 56788888743 789887654211 1 13568999999999999999999944444433 468999999
Q ss_pred hhhcccccEEeeceeeeeeeeeEEEe
Q 008863 523 GVYDKVNYFNYHDKLLFKKKKRLCLV 548 (550)
Q Consensus 523 el~~~~ad~a~~~~ti~~~r~~~~~~ 548 (550)
.|.+|++|++++++++|.+|++.+..
T Consensus 77 ~l~~g~~D~~~~~~~~t~eR~~~~~f 102 (259)
T 3g3k_A 77 ELIDHKADLAVAPLAITYVREEVIDF 102 (259)
T ss_dssp HHHTTSCSEECSSCBCCHHHHTTEEE
T ss_pred HHhcCcccEEEeeeEecccccceEee
Confidence 99999999999999999999987753
No 42
>1yae_A Glutamate receptor, ionotropic kainate 2; kainate receptor, membrane protein; HET: NAG FUC DOQ; 3.11A {Rattus norvegicus} SCOP: c.94.1.1
Probab=98.95 E-value=3.2e-10 Score=108.86 Aligned_cols=90 Identities=16% Similarity=0.281 Sum_probs=70.1
Q ss_pred CCCCeEecccCcccccccEEEecCCCCCCCCCCCcccccchHHHHHHHHHhCCCCCCeEEEec-----------CCChHH
Q 008863 451 NQEPMRIGVPTRTFFEKFVVIKDDPLNGNSNDKNLRYDGFSIELFRLVVDHLNYDLPYEFVPH-----------DGVYDD 519 (550)
Q Consensus 451 ~~~~~~i~~~~~~~~~pfv~~~~~~~~~~~~~~~~~~~GfciDll~~la~~l~f~~~~~~~~~-----------~g~w~G 519 (550)
..++|||++.. ++||.+....... .. ++.++.|||+||+++|++.+|++ |+++.+ ++.|++
T Consensus 11 ~~~~l~V~~~~---~~P~~~~~~~~~~-~~--~~g~~~G~~vdl~~~ia~~lg~~--~~~~~~~~~~~g~~~~~~~~~~~ 82 (312)
T 1yae_A 11 SNRSLIVTTIL---EEPYVLFKKSDKP-LY--GNDRFEGYCIDLLRELSTILGFT--YEIRLVEDGKYGAQDDVNGQWNG 82 (312)
T ss_dssp CSCEEEEEECC---BTTTBEECCCSSC-CC--GGGGEESHHHHHHHHHHHHHCCE--EEEEECSSCCCCCBCTTTCCBCS
T ss_pred cCceEEEEEec---cCCeeEEeccccc-cC--CCceEEEEEHHHHHHHHHHcCCe--EEEEecCCCccceeccCCCcchH
Confidence 34567888763 3789887521100 00 14479999999999999999999 666654 579999
Q ss_pred HHHhhhcccccEEeeceeeeeeeeeEEEe
Q 008863 520 LINGVYDKVNYFNYHDKLLFKKKKRLCLV 548 (550)
Q Consensus 520 mi~el~~~~ad~a~~~~ti~~~r~~~~~~ 548 (550)
++..|.+|++|++++++++|.+|++.+..
T Consensus 83 ~~~~l~~g~~D~~~~~~~~t~eR~~~~~f 111 (312)
T 1yae_A 83 MVRELIDHKADLAVAPLAITYVREKVIDF 111 (312)
T ss_dssp HHHHHHTTSCSEECSSCBCCHHHHHHEEE
T ss_pred HHHHHhCCCcCEEeecceechhhcceEEe
Confidence 99999999999999999999999987653
No 43
>2v3u_A Glutamate receptor delta-2 subunit; postsynaptic membrane, ionotropic glutamate receptors, transmembrane, membrane protein; 1.74A {Rattus norvegicus} PDB: 2v3t_A
Probab=98.89 E-value=8.1e-10 Score=103.16 Aligned_cols=87 Identities=21% Similarity=0.389 Sum_probs=70.7
Q ss_pred CCCeEecccCcccccccEEEecCCCCCCCCCCCcccccchHHHHHHHHHhCCCCCCeEEEec----------CCChHHHH
Q 008863 452 QEPMRIGVPTRTFFEKFVVIKDDPLNGNSNDKNLRYDGFSIELFRLVVDHLNYDLPYEFVPH----------DGVYDDLI 521 (550)
Q Consensus 452 ~~~~~i~~~~~~~~~pfv~~~~~~~~~~~~~~~~~~~GfciDll~~la~~l~f~~~~~~~~~----------~g~w~Gmi 521 (550)
+++|+|.+... +||.+...+..+ .+.++.||++||+++|++.+|++ +++++. ++.|++++
T Consensus 2 ~~~l~v~~~~~---pP~~~~~~~~~g-----~~g~~~G~~~dl~~~i~~~lg~~--~~~~~~~~~~~g~~~~~~~~~~~~ 71 (265)
T 2v3u_A 2 GVVLRVVTVLE---EPFVMVSENVLG-----KPKKYQGFSIDVLDALSNYLGFN--YEIYVAPDHKYGSPQEDGTWNGLV 71 (265)
T ss_dssp CCEEEEEECCB---TTTBEEECCSTT-----CCCEEESHHHHHHHHHHHHHTCE--EEEEECTTCCCCCBCTTSCBCHHH
T ss_pred CeEEEEEEecc---CCeEEEecCCCC-----CcceEeEEEHHHHHHHHHHcCCc--EEEEEccCCcccccCCCCCcchHH
Confidence 56778887643 889887654211 12379999999999999999999 777764 46899999
Q ss_pred HhhhcccccEEeeceeeeeeeeeEEEe
Q 008863 522 NGVYDKVNYFNYHDKLLFKKKKRLCLV 548 (550)
Q Consensus 522 ~el~~~~ad~a~~~~ti~~~r~~~~~~ 548 (550)
..|.+|++|++++++++|.+|++.+..
T Consensus 72 ~~l~~g~~D~~~~~~~~t~~R~~~~~f 98 (265)
T 2v3u_A 72 GELVFKRADIGISALTITPDRENVVDF 98 (265)
T ss_dssp HHHHTTSCSEECSSCBCCHHHHTTEEE
T ss_pred HHHHcCCcCeEEeeeEeehhhhccccc
Confidence 999999999999999999999986653
No 44
>1mqi_A Glutamate receptor 2; GLUR2, ligand binding core, S1S2, partial agonist, WILLARDIINES, fluoro-WILLARDIINE, membrane protein; HET: FWD; 1.35A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 1ftj_A* 1ftl_A* 1fto_A 1fw0_A* 1m5b_A* 1ftm_A* 1m5c_A* 1mm6_A* 1mm7_A* 1mqg_A* 1m5e_A* 1mqj_A* 1ms7_A* 1mxu_A* 1mxv_A 1mxw_A 1mxx_A 1mxy_A 1mxz_A 1my0_A ...
Probab=98.79 E-value=3.3e-09 Score=98.95 Aligned_cols=88 Identities=10% Similarity=0.234 Sum_probs=69.8
Q ss_pred CCCeEecccCcccccccEEEecCCCCCCCCCCCcccccchHHHHHHHHHhCCCCCCeEEEecC-----------CChHHH
Q 008863 452 QEPMRIGVPTRTFFEKFVVIKDDPLNGNSNDKNLRYDGFSIELFRLVVDHLNYDLPYEFVPHD-----------GVYDDL 520 (550)
Q Consensus 452 ~~~~~i~~~~~~~~~pfv~~~~~~~~~~~~~~~~~~~GfciDll~~la~~l~f~~~~~~~~~~-----------g~w~Gm 520 (550)
+++|+|.+. .++||.+...+... . +++..+.||++||+++|++.+|++ +++++.+ ..|+++
T Consensus 3 ~~~l~v~~~---~~pP~~~~~~~~~~-~--~~~g~~~G~~~dl~~~ia~~lg~~--~~~~~~~~~~~g~~~~~~~~~~~~ 74 (263)
T 1mqi_A 3 NKTVVVTTI---LESPYVMMKKNHEM-L--EGNERYEGYCVDLAAEIAKHCGFK--YKLTIVGDGKYGARDADTKIWNGM 74 (263)
T ss_dssp CCCEEEEEC---CBTTTBEECTTGGG-C--CGGGGEESHHHHHHHHHHHHHTCC--EEEEECTTCCCCCBCTTTCCBCHH
T ss_pred CeEEEEEEe---cCCCcEEEecCccc-c--cCCCceeeeHHHHHHHHHHHcCce--EEEEEccccccCccCCCCCCcHHH
Confidence 466788875 46899987543100 0 023479999999999999999999 7777652 279999
Q ss_pred HHhhhcccccEEeeceeeeeeeeeEEE
Q 008863 521 INGVYDKVNYFNYHDKLLFKKKKRLCL 547 (550)
Q Consensus 521 i~el~~~~ad~a~~~~ti~~~r~~~~~ 547 (550)
+..|.+|++|++++++++|.+|++.+.
T Consensus 75 ~~~l~~g~~D~~~~~~~~t~~R~~~~~ 101 (263)
T 1mqi_A 75 VGELVYGKADIAIAPLTITLVREEVID 101 (263)
T ss_dssp HHHHHTTSCSEECSSCBCCHHHHTTEE
T ss_pred HHHHHcCCcCEEEEeeEecHHHHhhcc
Confidence 999999999999999999999997664
No 45
>4gvo_A LMO2349 protein; structural genomics, IDP05245, L-cystine, ABC transporter, periplasmic binding protein, niaid; HET: HIS; 1.45A {Listeria monocytogenes} PDB: 2o1m_A
Probab=98.78 E-value=2.5e-09 Score=98.45 Aligned_cols=79 Identities=16% Similarity=0.351 Sum_probs=66.2
Q ss_pred CCeEecccCcccccccEEEecCCCCCCCCCCCcccccchHHHHHHHHHhC-CCCCCeEEEecCCChHHHHHhhhcccccE
Q 008863 453 EPMRIGVPTRTFFEKFVVIKDDPLNGNSNDKNLRYDGFSIELFRLVVDHL-NYDLPYEFVPHDGVYDDLINGVYDKVNYF 531 (550)
Q Consensus 453 ~~~~i~~~~~~~~~pfv~~~~~~~~~~~~~~~~~~~GfciDll~~la~~l-~f~~~~~~~~~~g~w~Gmi~el~~~~ad~ 531 (550)
++|+|++ ...|+||.+..++. .+.||++||+++|++.| |++ +++++. .|++++..|..|++|+
T Consensus 9 ~tl~vg~--~~~~pP~~~~d~~G----------~~~G~~vdl~~~ia~~l~g~~--~~~~~~--~~~~~~~~l~~g~~D~ 72 (243)
T 4gvo_A 9 QTITVGT--GTQFPNVCFLDENG----------KLTGYDVELVKEIDKRLPGYK--FKFKTM--DFSNLLVSLGAGKVDI 72 (243)
T ss_dssp EEEEEEE--CSEETTTEEECTTS----------CEESHHHHHHHHHHHTCTTEE--EEEEEC--CGGGHHHHHHTTSCSE
T ss_pred CeEEEEE--CCCCCCeEEECCCC----------cEEEhHHHHHHHHHHhccCCe--EEEEEC--CHHHHHHHHHCCCCCE
Confidence 4567775 34689998875433 68999999999999998 888 777775 5999999999999999
Q ss_pred EeeceeeeeeeeeEEE
Q 008863 532 NYHDKLLFKKKKRLCL 547 (550)
Q Consensus 532 a~~~~ti~~~r~~~~~ 547 (550)
+++++++|+||++.+.
T Consensus 73 ~~~~~~~t~eR~~~~~ 88 (243)
T 4gvo_A 73 VAHQMEKSKEREKKFL 88 (243)
T ss_dssp ECSCCBCCHHHHHHSE
T ss_pred ecccCCCCHHHhhhhh
Confidence 9999999999998654
No 46
>3i6v_A Periplasmic His/Glu/Gln/Arg/opine family-binding; structural genomics, transporter, PSI-2, protein structure initiative; HET: LYS; 2.00A {Silicibacter pomeroyi} SCOP: c.94.1.0
Probab=98.64 E-value=1.7e-08 Score=92.09 Aligned_cols=80 Identities=16% Similarity=0.232 Sum_probs=66.6
Q ss_pred CCCeEecccCcccccccEEEecCCCCCCCCCCCcccccchHHHHHHHHHhCCCCCCeEEEecCCChHHHHHhhhcccccE
Q 008863 452 QEPMRIGVPTRTFFEKFVVIKDDPLNGNSNDKNLRYDGFSIELFRLVVDHLNYDLPYEFVPHDGVYDDLINGVYDKVNYF 531 (550)
Q Consensus 452 ~~~~~i~~~~~~~~~pfv~~~~~~~~~~~~~~~~~~~GfciDll~~la~~l~f~~~~~~~~~~g~w~Gmi~el~~~~ad~ 531 (550)
.+++||+.. ..++||.+..++. .+.||++||+++|++.+|++ +++++. .|+.++..|.+|++|+
T Consensus 4 a~~l~v~~~--~~~~P~~~~~~~g----------~~~G~~~dl~~~i~~~~g~~--~~~~~~--~~~~~~~~l~~g~~D~ 67 (232)
T 3i6v_A 4 ADTVRMGTE--GAYPPYNFINDAG----------EVDGFERELGDELCKRAGLT--CEWVKN--DWDSIIPNLVSGNYDT 67 (232)
T ss_dssp --CEEEEEC--SEETTTEEECTTS----------CEESHHHHHHHHHHHHHTCC--EEEEEC--CGGGHHHHHHTTSCSE
T ss_pred CCEEEEEEC--CCCCCeeEECCCC----------CEeeehHHHHHHHHHHcCCc--eEEEEC--CHHHHHHHHHCCCCCE
Confidence 356777754 4578999874432 68999999999999999999 777774 7999999999999999
Q ss_pred EeeceeeeeeeeeEEE
Q 008863 532 NYHDKLLFKKKKRLCL 547 (550)
Q Consensus 532 a~~~~ti~~~r~~~~~ 547 (550)
+++++++|.+|++.+.
T Consensus 68 ~~~~~~~t~~r~~~~~ 83 (232)
T 3i6v_A 68 IIAGMSITDERDEVID 83 (232)
T ss_dssp ECSSCBCCHHHHTTSE
T ss_pred EEeCCcCCHHHHhhcC
Confidence 9999999999987654
No 47
>4h5g_A Amino acid ABC superfamily ATP binding cassette transporter, binding protein; center for structural genomics of infectious diseases (csgid national institute of allergy and infectious diseases; HET: ARG; 1.78A {Streptococcus pneumoniae} PDB: 4h5f_A*
Probab=98.60 E-value=1.9e-08 Score=92.59 Aligned_cols=82 Identities=10% Similarity=0.131 Sum_probs=67.2
Q ss_pred CeEecccCcccccccEEEecCCCCCCCCCCCcccccchHHHHHHHHHhCCCCCCeEEEecCCChHHHHHhhhcccccEEe
Q 008863 454 PMRIGVPTRTFFEKFVVIKDDPLNGNSNDKNLRYDGFSIELFRLVVDHLNYDLPYEFVPHDGVYDDLINGVYDKVNYFNY 533 (550)
Q Consensus 454 ~~~i~~~~~~~~~pfv~~~~~~~~~~~~~~~~~~~GfciDll~~la~~l~f~~~~~~~~~~g~w~Gmi~el~~~~ad~a~ 533 (550)
+|+|++ ...|+||.+..... ++..+.||.+||+++|++.+|++ +++++. .|++++..|..|++|+++
T Consensus 13 ~L~Vg~--~~~~pP~~~~~~~d-------~~g~~~G~~vdl~~~ia~~lg~~--~~~~~~--~~~~~~~~l~~g~~d~~~ 79 (243)
T 4h5g_A 13 KLVVAT--SPDYAPFEFQSLVD-------GKNQVVGADIDMAQAIADELGVK--LEILSM--SFDNVLTSLQTGKADLAV 79 (243)
T ss_dssp EEEEEE--CCCBTTTBEEEEET-------TEEEEESHHHHHHHHHHHHHTSE--EEEEEC--CGGGHHHHHHTTSCSEEC
T ss_pred EEEEEE--CCCCCCcEeeeccC-------CCCcEEEeHHHHHHHHHHHhCCc--eEEecc--cHHHHHHHHHcCCCCccc
Confidence 456765 34678998764321 23479999999999999999999 777775 599999999999999999
Q ss_pred eceeeeeeeeeEEEe
Q 008863 534 HDKLLFKKKKRLCLV 548 (550)
Q Consensus 534 ~~~ti~~~r~~~~~~ 548 (550)
+++++|.||++.+..
T Consensus 80 ~~~~~t~eR~~~~~f 94 (243)
T 4h5g_A 80 AGISATDERKEVFDF 94 (243)
T ss_dssp SSCBCCHHHHTTEEE
T ss_pred ccccCChhHccEEEc
Confidence 999999999987653
No 48
>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}
Probab=98.48 E-value=1.7e-05 Score=73.99 Aligned_cols=209 Identities=11% Similarity=0.040 Sum_probs=138.1
Q ss_pred EEEEEEEecC-CccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCC-eEEEEcC-CChHHHH
Q 008863 35 TKIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEK-VKVIAGM-ETWEETA 111 (550)
Q Consensus 35 i~IG~i~~~~-~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~-v~aiiG~-~~s~~~~ 111 (550)
++||+++|.. .........+++.+.++. |+.+.+...++..++....+....++.+ + +.+||-. ..+....
T Consensus 1 ~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~-----g~~~~~~~~~~~~~~~~~~~~i~~l~~~-~~vdgii~~~~~~~~~~ 74 (276)
T 3ksm_A 1 PKLLLVLKGDSNAYWRQVYLGAQKAADEA-----GVTLLHRSTKDDGDIAGQIQILSYHLSQ-APPDALILAPNSAEDLT 74 (276)
T ss_dssp CEEEEECSCSSSTHHHHHHHHHHHHHHHH-----TCEEEECCCSSTTCHHHHHHHHHHHHHH-SCCSEEEECCSSTTTTH
T ss_pred CeEEEEeCCCCChHHHHHHHHHHHHHHHc-----CCEEEEECCCCCCCHHHHHHHHHHHHHh-CCCCEEEEeCCCHHHHH
Confidence 5899999865 344456667787777775 6677665545677888777888888875 6 8877753 3333444
Q ss_pred HHHHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHHc----CCeEEEEEEEcCCCCCcchhHH
Q 008863 112 VVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKY----NWRRVAAIYEDNVYGGDSGKLA 187 (550)
Q Consensus 112 ~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~~----~w~~v~ii~~~~~~g~~~~~~~ 187 (550)
.....+...++|+|..... .+.. +....+.++....+..++++|... |.++++++.............+
T Consensus 75 ~~~~~~~~~~ipvV~~~~~--~~~~-----~~~~~V~~d~~~~g~~~~~~l~~~~~~~G~~~i~~i~~~~~~~~~~~R~~ 147 (276)
T 3ksm_A 75 PSVAQYRARNIPVLVVDSD--LAGD-----AHQGLVATDNYAAGQLAARALLATLDLSKERNIALLRLRAGNASTDQREQ 147 (276)
T ss_dssp HHHHHHHHTTCCEEEESSC--CSSS-----CSSEEEECCHHHHHHHHHHHHHHHSCTTSCEEEEECBCCTTCHHHHHHHH
T ss_pred HHHHHHHHCCCcEEEEecC--CCCC-----CcceEEccCHHHHHHHHHHHHHHhcCcCCCceEEEEEcCCCchhHHHHHH
Confidence 4555667789999998765 2211 122346788888999999999777 8999999986533111155678
Q ss_pred HHHHHHhcC-CCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcC--CCeEEEEEcCCHHHHHHHHHHHHHcCCCCCCEEE
Q 008863 188 LLAEALQNV-SSSEIQSRLVLPPISSISDPKEAVRGELKKVQDK--QSRVFIVLQASLDMTIHLFTEANRMGLVGKDSVW 264 (550)
Q Consensus 188 ~l~~~l~~~-g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~--~~~~ii~~~~~~~~~~~il~~a~~~g~~~~~~~~ 264 (550)
.+.+.+++. | +.+.... .... ........++++.+. .++.|+ +.+...+..+++++++.|+ +.+...
T Consensus 148 gf~~~l~~~~~-~~~~~~~--~~~~----~~~~~~~~~~~~l~~~~~~~ai~--~~~d~~a~g~~~al~~~g~-p~di~v 217 (276)
T 3ksm_A 148 GFLDVLRKHDK-IRIIAAP--YAGD----DRGAARSEMLRLLKETPTIDGLF--TPNESTTIGALVAIRQSGM-SKQFGF 217 (276)
T ss_dssp HHHHHHTTCTT-EEEEECC--BCCS----SHHHHHHHHHHHHHHCSCCCEEE--CCSHHHHHHHHHHHHHTTC-TTSSEE
T ss_pred HHHHHHHhCCC-cEEEEEe--cCCC----cHHHHHHHHHHHHHhCCCceEEE--ECCchhhhHHHHHHHHcCC-CCCeEE
Confidence 888999888 7 7765322 1111 334444555555443 455554 4677778889999999998 444334
Q ss_pred EE
Q 008863 265 IV 266 (550)
Q Consensus 265 i~ 266 (550)
++
T Consensus 218 ig 219 (276)
T 3ksm_A 218 IG 219 (276)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 49
>3kbr_A Cyclohexadienyl dehydratase; pseudomonas aeruginos structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Pseudomonas aeruginosa}
Probab=98.44 E-value=1.1e-07 Score=86.94 Aligned_cols=79 Identities=14% Similarity=0.283 Sum_probs=66.5
Q ss_pred CCeEecccCcccccccEEEecCCCCCCCCCCCcccccchHHHHHHHHHhCCCCCCeEEEecCCChHHHHHhhhcccccEE
Q 008863 453 EPMRIGVPTRTFFEKFVVIKDDPLNGNSNDKNLRYDGFSIELFRLVVDHLNYDLPYEFVPHDGVYDDLINGVYDKVNYFN 532 (550)
Q Consensus 453 ~~~~i~~~~~~~~~pfv~~~~~~~~~~~~~~~~~~~GfciDll~~la~~l~f~~~~~~~~~~g~w~Gmi~el~~~~ad~a 532 (550)
++++|+.. ..++||.+..++. .+.||++||++++++.+|++ +++++. .|+.++..|.+|++|++
T Consensus 15 ~~l~v~~~--~~~~P~~~~~~~g----------~~~G~~~dl~~~i~~~~g~~--~~~~~~--~~~~~~~~l~~g~~D~~ 78 (239)
T 3kbr_A 15 GVLRVATT--GDYKPFSYRTEEG----------GYAGFDVDMAQRLAESLGAK--LVVVPT--SWPNLMRDFADDRFDIA 78 (239)
T ss_dssp TEEEEEEC--SEETTTEEECTTS----------CEESHHHHHHHHHHHHTTCE--EEEEEC--CTTTHHHHHHTTCCSEE
T ss_pred CeEEEEEC--CCCCCeeEECCCC----------CEEeehHHHHHHHHHHHCCc--eEEEEe--CHHHHHHHHHCCCcCEE
Confidence 45677763 3578998875432 68999999999999999998 777775 79999999999999999
Q ss_pred eeceeeeeeeeeEEE
Q 008863 533 YHDKLLFKKKKRLCL 547 (550)
Q Consensus 533 ~~~~ti~~~r~~~~~ 547 (550)
++++++|.+|++.+.
T Consensus 79 ~~~~~~t~~r~~~~~ 93 (239)
T 3kbr_A 79 MSGISINLERQRQAY 93 (239)
T ss_dssp CSSCBCCHHHHTTCE
T ss_pred EeCCcCCHHHcCccc
Confidence 999999999987654
No 50
>3k4u_A Binding component of ABC transporter; structural genomics, protein structure INI NEW YORK structural genomix research consortium, nysgxrc; HET: LYS; 2.62A {Wolinella succinogenes} SCOP: c.94.1.0
Probab=98.43 E-value=1.1e-07 Score=87.28 Aligned_cols=79 Identities=16% Similarity=0.274 Sum_probs=66.4
Q ss_pred CCeEecccCcccccccEEEecCCCCCCCCCCCcccccchHHHHHHHHHhCCCCCCeEEEecCCChHHHHHhhhcccccEE
Q 008863 453 EPMRIGVPTRTFFEKFVVIKDDPLNGNSNDKNLRYDGFSIELFRLVVDHLNYDLPYEFVPHDGVYDDLINGVYDKVNYFN 532 (550)
Q Consensus 453 ~~~~i~~~~~~~~~pfv~~~~~~~~~~~~~~~~~~~GfciDll~~la~~l~f~~~~~~~~~~g~w~Gmi~el~~~~ad~a 532 (550)
++++|... ..++||.+..++. .+.||++||++++++.+|++ +++++. .|..++..|.+|++|++
T Consensus 5 ~~l~v~~~--~~~~P~~~~~~~g----------~~~G~~~dl~~~i~~~~g~~--~~~~~~--~~~~~~~~l~~g~~D~~ 68 (245)
T 3k4u_A 5 GELRVGLE--PGYLPFEMKDKKG----------NVIGFDVDLAREMAKAMGVK--LKLVPT--SWDGLIPGLVTEKFDII 68 (245)
T ss_dssp SEEEEEEC--TTSTTTCEEETTT----------EEESHHHHHHHHHHHHHTCE--EEEEEC--CGGGHHHHHHTTSCSEE
T ss_pred CeEEEEEC--CCcCCeeEECCCC----------CCccchHHHHHHHHHHhCCe--EEEEEc--cHHHHHHHHhCCCcCEE
Confidence 45677764 4678998875433 69999999999999999999 777775 59999999999999999
Q ss_pred eeceeeeeeeeeEEE
Q 008863 533 YHDKLLFKKKKRLCL 547 (550)
Q Consensus 533 ~~~~ti~~~r~~~~~ 547 (550)
+++++.|.+|++.+.
T Consensus 69 ~~~~~~t~~r~~~~~ 83 (245)
T 3k4u_A 69 ISGMTISQERNLRVN 83 (245)
T ss_dssp CSSCBCCHHHHTTSE
T ss_pred EecCcCCHHHHhhcC
Confidence 999999999987554
No 51
>3kzg_A Arginine 3RD transport system periplasmic binding protein; arginine transport system, protein structure initiative II(PSI II); 2.06A {Legionella pneumophila subsp} SCOP: c.94.1.0
Probab=98.41 E-value=1.7e-07 Score=85.67 Aligned_cols=79 Identities=19% Similarity=0.362 Sum_probs=65.7
Q ss_pred CCeEecccCcccccccEEE-ecCCCCCCCCCCCcccccchHHHHHHHHHhCCCCCCeEEEecCCChHHHHHhhhcccccE
Q 008863 453 EPMRIGVPTRTFFEKFVVI-KDDPLNGNSNDKNLRYDGFSIELFRLVVDHLNYDLPYEFVPHDGVYDDLINGVYDKVNYF 531 (550)
Q Consensus 453 ~~~~i~~~~~~~~~pfv~~-~~~~~~~~~~~~~~~~~GfciDll~~la~~l~f~~~~~~~~~~g~w~Gmi~el~~~~ad~ 531 (550)
++++|+.. ..++||.+. .++. .+.||++||++++++.+|++ +++++. .|+.++..|.+|++|+
T Consensus 3 ~~l~v~~~--~~~~P~~~~~~~~g----------~~~G~~~dl~~~i~~~~g~~--~~~~~~--~~~~~~~~l~~g~~D~ 66 (237)
T 3kzg_A 3 LNLTIGTS--KFNPPFEVWSGNNS----------SLYGFDIDLMQEICRRLHAT--CTFEAY--IFDDLFPALKNREVDL 66 (237)
T ss_dssp CEEEEEEE--SEETTTEECCCTTS----------CCBSHHHHHHHHHHHHTTCE--EEEEEE--CGGGHHHHHHTTSSSE
T ss_pred ceEEEEEC--CCCCCeEEEeCCCC----------CEeeehHHHHHHHHHHhCCc--eEEEEc--CHHHHHHHHhCCCCCE
Confidence 45677764 347899876 3222 68999999999999999998 777775 5999999999999999
Q ss_pred EeeceeeeeeeeeEEE
Q 008863 532 NYHDKLLFKKKKRLCL 547 (550)
Q Consensus 532 a~~~~ti~~~r~~~~~ 547 (550)
+++++++|.+|++.+.
T Consensus 67 ~~~~~~~~~~r~~~~~ 82 (237)
T 3kzg_A 67 VIASMIITDERKKHFI 82 (237)
T ss_dssp ECSSCBCCTTGGGTCE
T ss_pred EEEccccChhHhccce
Confidence 9999999999987654
No 52
>3tql_A Arginine-binding protein; transport and binding proteins, transport protein; HET: MSE ARG; 1.59A {Coxiella burnetii} SCOP: c.94.1.0
Probab=98.39 E-value=3e-07 Score=83.13 Aligned_cols=80 Identities=9% Similarity=0.175 Sum_probs=65.8
Q ss_pred CCeEecccCcccccccEEEecCCCCCCCCCCCcccccchHHHHHHHHHhCCCCCCeEEEecCCChHHHHHhhhcccccEE
Q 008863 453 EPMRIGVPTRTFFEKFVVIKDDPLNGNSNDKNLRYDGFSIELFRLVVDHLNYDLPYEFVPHDGVYDDLINGVYDKVNYFN 532 (550)
Q Consensus 453 ~~~~i~~~~~~~~~pfv~~~~~~~~~~~~~~~~~~~GfciDll~~la~~l~f~~~~~~~~~~g~w~Gmi~el~~~~ad~a 532 (550)
+++||+.. ..++||.+..++. .+.||++||++++++.+|++ +++++. .|..++..|.+|++|++
T Consensus 2 ~~l~v~~~--~~~~P~~~~~~~g----------~~~G~~~dl~~~i~~~~g~~--~~~~~~--~~~~~~~~l~~g~~D~~ 65 (227)
T 3tql_A 2 DTIKFATE--ATYPPYVYMGPSG----------QVEGFGADIVKAVCKQMQAV--CTISNQ--PWDSLIPSLKLGKFDAL 65 (227)
T ss_dssp CEEEEEEC--SCBTTTBEEC--C----------CEESHHHHHHHHHHHHTTCE--EEEEEC--CHHHHHHHHHHTSCSEE
T ss_pred ceEEEEEc--CCCCCeeEECCCC----------CcccchHHHHHHHHHHhCCe--EEEEeC--CHHHHHHHHhCCCCCEE
Confidence 45677764 2478999874432 68999999999999999999 777774 69999999999999999
Q ss_pred eeceeeeeeeeeEEEe
Q 008863 533 YHDKLLFKKKKRLCLV 548 (550)
Q Consensus 533 ~~~~ti~~~r~~~~~~ 548 (550)
+++++.+.+|++.+..
T Consensus 66 ~~~~~~~~~r~~~~~~ 81 (227)
T 3tql_A 66 FGGMNITTARQKEVDF 81 (227)
T ss_dssp CSSCBCCTTGGGTEEE
T ss_pred EecCcCCHhHHhheec
Confidence 9999999999886653
No 53
>3del_B Arginine binding protein; alpha and beta protein (A/B), periplasmic protein, arginine protein binding, transport protein; 1.92A {Chlamydia trachomatis} SCOP: c.94.1.0
Probab=98.38 E-value=1.9e-07 Score=85.57 Aligned_cols=79 Identities=16% Similarity=0.222 Sum_probs=66.0
Q ss_pred CCeEecccCcccccccEEEecCCCCCCCCCCCcccccchHHHHHHHHHhCCCCCCeEEEecCCChHHHHHhhhcccccEE
Q 008863 453 EPMRIGVPTRTFFEKFVVIKDDPLNGNSNDKNLRYDGFSIELFRLVVDHLNYDLPYEFVPHDGVYDDLINGVYDKVNYFN 532 (550)
Q Consensus 453 ~~~~i~~~~~~~~~pfv~~~~~~~~~~~~~~~~~~~GfciDll~~la~~l~f~~~~~~~~~~g~w~Gmi~el~~~~ad~a 532 (550)
++++|+. ...++||.+..++. .+.||++||+++|++.+|++ +++++. .|+.++..|.+|++|++
T Consensus 11 ~~l~v~~--~~~~~P~~~~~~~g----------~~~G~~~dl~~~i~~~~g~~--~~~~~~--~~~~~~~~l~~g~~D~~ 74 (242)
T 3del_B 11 EKFIVGT--NATYPPFEFVDKRG----------EVVGFDIDLAREISNKLGKT--LDVREF--SFDALILNLKQHRIDAV 74 (242)
T ss_dssp CEEEEEE--CSCBTTTBEECTTS----------CEESHHHHHHHHHHHHHTCE--EEEEEC--CGGGHHHHHHTTSSSEE
T ss_pred CcEEEEe--CCCCCCeeEECCCC----------CEEEeeHHHHHHHHHHcCCc--eEEEEc--CHHHHHHHHhCCCcCEE
Confidence 4567776 33578998764432 68999999999999999988 788776 69999999999999999
Q ss_pred eeceeeeeeeeeEEE
Q 008863 533 YHDKLLFKKKKRLCL 547 (550)
Q Consensus 533 ~~~~ti~~~r~~~~~ 547 (550)
++++++|.+|++.+.
T Consensus 75 ~~~~~~~~~r~~~~~ 89 (242)
T 3del_B 75 ITGMSITPSRLKEIL 89 (242)
T ss_dssp CSSBBCCHHHHTTEE
T ss_pred EecCcCCHHHHhccc
Confidence 999999999987553
No 54
>1lst_A Lysine, arginine, ornithine-binding protein; amino-acid binding protein; HET: LYS; 1.80A {Salmonella typhimurium} SCOP: c.94.1.1 PDB: 2lao_A 1lag_E* 1lah_E 1laf_E 1hsl_A* 1hpb_P*
Probab=98.37 E-value=2.1e-07 Score=85.01 Aligned_cols=79 Identities=19% Similarity=0.258 Sum_probs=65.4
Q ss_pred CCeEecccCcccccccEEEecCCCCCCCCCCCcccccchHHHHHHHHHhCCCCCCeEEEecCCChHHHHHhhhcccccEE
Q 008863 453 EPMRIGVPTRTFFEKFVVIKDDPLNGNSNDKNLRYDGFSIELFRLVVDHLNYDLPYEFVPHDGVYDDLINGVYDKVNYFN 532 (550)
Q Consensus 453 ~~~~i~~~~~~~~~pfv~~~~~~~~~~~~~~~~~~~GfciDll~~la~~l~f~~~~~~~~~~g~w~Gmi~el~~~~ad~a 532 (550)
++++|++ ...++||.+..++. .+.||++||++++++.+|++ +++++. .|+.++..|.+|++|++
T Consensus 4 ~~l~v~~--~~~~~P~~~~~~~g----------~~~G~~~dl~~~i~~~~g~~--~~~~~~--~~~~~~~~l~~g~~D~~ 67 (239)
T 1lst_A 4 QTVRIGT--DTTYAPFSSKDAKG----------EFIGFDIDLGNEMCKRMQVK--CTWVAS--DFDALIPSLKAKKIDAI 67 (239)
T ss_dssp SEEEEEE--CSCBTTTBEECTTC----------CEESHHHHHHHHHHHHHTCE--EEEEEC--CGGGHHHHHHTTSCSEE
T ss_pred ceEEEEE--CCCcCCeeEECCCC----------CEeeEHHHHHHHHHHHHCCe--EEEEeC--CHHHHHHHHhCCCCCEE
Confidence 4567776 23578998764432 68999999999999999998 777764 79999999999999999
Q ss_pred eeceeeeeeeeeEEE
Q 008863 533 YHDKLLFKKKKRLCL 547 (550)
Q Consensus 533 ~~~~ti~~~r~~~~~ 547 (550)
++++++|.+|++.+.
T Consensus 68 ~~~~~~t~~r~~~~~ 82 (239)
T 1lst_A 68 ISSLSITDKRQQEIA 82 (239)
T ss_dssp CSSCBCCHHHHHHCE
T ss_pred EECcCcCHHHhhcee
Confidence 999999999987544
No 55
>3hv1_A Polar amino acid ABC uptake transporter substrate binding protein; protein structure initiative II(PSI II), nysgxrc; 1.90A {Streptococcus thermophilus lmg 18311}
Probab=98.36 E-value=2.3e-07 Score=86.50 Aligned_cols=79 Identities=18% Similarity=0.209 Sum_probs=66.4
Q ss_pred CCeEecccCcccccccEEEecCCCCCCCCCCCcccccchHHHHHHHHHhCCCCCCeEEEecCCChHHHHHhhhcccccEE
Q 008863 453 EPMRIGVPTRTFFEKFVVIKDDPLNGNSNDKNLRYDGFSIELFRLVVDHLNYDLPYEFVPHDGVYDDLINGVYDKVNYFN 532 (550)
Q Consensus 453 ~~~~i~~~~~~~~~pfv~~~~~~~~~~~~~~~~~~~GfciDll~~la~~l~f~~~~~~~~~~g~w~Gmi~el~~~~ad~a 532 (550)
+++||+.. ..++||.+..++. .+.||++||++++++.+|++ +++++. .|..++..|.+|++|++
T Consensus 21 ~~l~v~~~--~~~~P~~~~~~~g----------~~~G~~~dl~~~i~~~~g~~--~~~~~~--~~~~~~~~l~~g~~D~~ 84 (268)
T 3hv1_A 21 KKIKIGFD--ATFVPMGYEEKDG----------SYIGFDIDLANAVFKLYGID--VEWQAI--DWDMKETELKNGTIDLI 84 (268)
T ss_dssp TEEEEEEC--TEETTTEEECTTS----------CEECHHHHHHHHHHHTTTCE--EEEEEC--CGGGHHHHHHHTSCSEE
T ss_pred CcEEEEEC--CCCCCceEECCCC----------CEEEehHHHHHHHHHHhCCc--EEEEEC--CHHHHHHHHHCCCCCEE
Confidence 45677764 3578999875432 68999999999999999998 777776 49999999999999999
Q ss_pred eeceeeeeeeeeEEE
Q 008863 533 YHDKLLFKKKKRLCL 547 (550)
Q Consensus 533 ~~~~ti~~~r~~~~~ 547 (550)
++++++|.+|++.+.
T Consensus 85 ~~~~~~t~~r~~~~~ 99 (268)
T 3hv1_A 85 WNGYSVTDERKQSAD 99 (268)
T ss_dssp CSSCBCCHHHHTTCE
T ss_pred EecCccCHHHHhcCc
Confidence 999999999987654
No 56
>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, struct genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli}
Probab=98.35 E-value=9.6e-06 Score=76.60 Aligned_cols=201 Identities=10% Similarity=0.062 Sum_probs=129.8
Q ss_pred CcEEEEEEEec---CCccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEcCCChHH
Q 008863 33 EVTKIGAIVDA---NSQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEE 109 (550)
Q Consensus 33 ~~i~IG~i~~~---~~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~~ 109 (550)
.+.+||+++|. +.........+++.++++. |+.+ .+.+...++....+....++. .++.+||.......
T Consensus 18 ~~~~Ig~i~~~~~~~~~~~~~~~~gi~~~~~~~-----g~~~--~~~~~~~~~~~~~~~~~~l~~-~~vdgii~~~~~~~ 89 (296)
T 3brq_A 18 STQTLGLVVTNTLYHGIYFSELLFHAARMAEEK-----GRQL--LLADGKHSAEEERQAIQYLLD-LRCDAIMIYPRFLS 89 (296)
T ss_dssp -CCEEEEEECGGGCC--CHHHHHHHHHHHHHHT-----TCEE--EEECCTTSHHHHHHHHHHHHH-TTCSEEEEECSSSC
T ss_pred CCceEEEEeCCcccCCchHHHHHHHHHHHHHHC-----CCEE--EEEeCCCCHHHHHHHHHHHHh-cCCCEEEEecCCCC
Confidence 57899999986 3445566777877777663 5554 445667777766677777775 58888876332222
Q ss_pred HHHHHHhhcc-CCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHHcCCeEEEEEEEcCC--CCCcchhH
Q 008863 110 TAVVAEIASR-VQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNV--YGGDSGKL 186 (550)
Q Consensus 110 ~~~v~~~~~~-~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~~~w~~v~ii~~~~~--~g~~~~~~ 186 (550)
...+. .+.. .++|+|..... .+. +.+..+..+....+..++++|...|.+++++|..+.. .. ....
T Consensus 90 ~~~~~-~l~~~~~iPvV~~~~~--~~~------~~~~~V~~d~~~~~~~a~~~l~~~G~~~I~~i~~~~~~~~~--~~R~ 158 (296)
T 3brq_A 90 VDEID-DIIDAHSQPIMVLNRR--LRK------NSSHSVWCDHKQTSFNAVAELINAGHQEIAFLTGSMDSPTS--IERL 158 (296)
T ss_dssp HHHHH-HHHHTCSSCEEEESCC--CSS------SGGGEECCCHHHHHHHHHHHHHHTTCCSEEEECCCTTCHHH--HHHH
T ss_pred hHHHH-HHHhcCCCCEEEEccc--cCC------CCCCEEEEchHHHHHHHHHHHHHCCCceEEEEcCCCCCccH--HHHH
Confidence 22233 3445 79999998754 221 1223466777778888899998889999999987643 23 4556
Q ss_pred HHHHHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcC--CCeEEEEEcCCHHHHHHHHHHHHHcCCCC
Q 008863 187 ALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDK--QSRVFIVLQASLDMTIHLFTEANRMGLVG 259 (550)
Q Consensus 187 ~~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~--~~~~ii~~~~~~~~~~~il~~a~~~g~~~ 259 (550)
+.+.+.+++.| +.+.....+.... +..+....++++.+. +++.|+. .+...+..+++++++.|+.-
T Consensus 159 ~gf~~~l~~~g-~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~ai~~--~~d~~a~g~~~al~~~g~~v 226 (296)
T 3brq_A 159 AGYKDALAQHG-IALNEKLIANGKW----TPASGAEGVEMLLERGAKFSALVA--SNDDMAIGAMKALHERGVAV 226 (296)
T ss_dssp HHHHHHHHTTT-CCCCGGGEECCCS----SHHHHHHHHHHHHTC--CCSEEEE--SSHHHHHHHHHHHHHHTCCT
T ss_pred HHHHHHHHHcC-CCCChhhEEeCCC----ChhHHHHHHHHHHhCCCCCCEEEE--CChHHHHHHHHHHHHcCCCC
Confidence 77888999888 7654322222111 223444556666543 5677765 56677888999999999863
No 57
>4dz1_A DALS D-alanine transporter; D-alanine binding, periplasmic, transport protein; 1.90A {Salmonella enterica} PDB: 3r39_A 4f3s_A
Probab=98.34 E-value=3.9e-07 Score=84.55 Aligned_cols=81 Identities=12% Similarity=0.226 Sum_probs=67.4
Q ss_pred CCCeEecccCcccccccEEEecCCCCCCCCCCCcccccchHHHHHHHHHhCCCCCCeEEEecCCChHHHHHhhhcccccE
Q 008863 452 QEPMRIGVPTRTFFEKFVVIKDDPLNGNSNDKNLRYDGFSIELFRLVVDHLNYDLPYEFVPHDGVYDDLINGVYDKVNYF 531 (550)
Q Consensus 452 ~~~~~i~~~~~~~~~pfv~~~~~~~~~~~~~~~~~~~GfciDll~~la~~l~f~~~~~~~~~~g~w~Gmi~el~~~~ad~ 531 (550)
.++++|... ..++||.+..++. .+.||++||++++++.+|++ +++++. .|+.++..|.+|++|+
T Consensus 28 ~~~l~v~~~--~~~~P~~~~~~~g----------~~~G~~~dl~~~i~~~~g~~--~~~~~~--~~~~~~~~l~~g~~D~ 91 (259)
T 4dz1_A 28 GRTLNVAVS--PASPPMLFKSADG----------KLQGIDLELFSSYCQSRHCK--LNITEY--AWDGMLGAVASGQADV 91 (259)
T ss_dssp TCEEEEEEC--CCBTTTBEECTTC----------CEESHHHHHHHHHHHHHTCE--EEEEEC--CHHHHHHHHHHTSSSE
T ss_pred CCeEEEEEC--CCCCCeEEECCCC----------CEEEeHHHHHHHHHHHhCCe--EEEEEc--CHHHHHHHHhCCCCCE
Confidence 355677663 3568998765332 68999999999999999999 777776 7999999999999999
Q ss_pred EeeceeeeeeeeeEEEe
Q 008863 532 NYHDKLLFKKKKRLCLV 548 (550)
Q Consensus 532 a~~~~ti~~~r~~~~~~ 548 (550)
+++++++|.+|++.+..
T Consensus 92 ~~~~~~~t~~r~~~~~f 108 (259)
T 4dz1_A 92 AFSGISITDKRKKVIDF 108 (259)
T ss_dssp EEEEEECCHHHHTTEEE
T ss_pred EEECCcCCHHHhhcccc
Confidence 99999999999986653
No 58
>4f3p_A Glutamine-binding periplasmic protein; ssgcid, structural genomics, GLUT seattle structural genomics center for infectious disease; 2.40A {Burkholderia pseudomallei}
Probab=98.34 E-value=4e-07 Score=83.84 Aligned_cols=81 Identities=15% Similarity=0.296 Sum_probs=66.8
Q ss_pred CCCCeEecccCcccccccEEEecCCCCCCCCCCCcccccchHHHHHHHHHhCCCCCCeEEEecCCChHHHHHhhhccccc
Q 008863 451 NQEPMRIGVPTRTFFEKFVVIKDDPLNGNSNDKNLRYDGFSIELFRLVVDHLNYDLPYEFVPHDGVYDDLINGVYDKVNY 530 (550)
Q Consensus 451 ~~~~~~i~~~~~~~~~pfv~~~~~~~~~~~~~~~~~~~GfciDll~~la~~l~f~~~~~~~~~~g~w~Gmi~el~~~~ad 530 (550)
..++++|... ..++||.+. ++. .+.||++||++++++.+|++ +++++. .|..++..|.+|++|
T Consensus 22 ~~~~l~v~~~--~~~~P~~~~-~~g----------~~~G~~~dl~~~i~~~~g~~--~~~~~~--~~~~~~~~l~~g~~D 84 (249)
T 4f3p_A 22 MAKELVVGTD--TSFMPFEFK-QGD----------KYVGFDLDLWAEIAKGAGWT--YKIQPM--DFAGLIPALQTQNID 84 (249)
T ss_dssp --CCEEEEEE--SCBTTTBEE-ETT----------EEESHHHHHHHHHHHHHTCC--EEEEEE--CGGGHHHHHHTTSCS
T ss_pred cCceEEEEeC--CCCCCeEEe-cCC----------eEEEEhHHHHHHHHHHcCCc--eEEEec--CHHHHHHHHHCCCCC
Confidence 4566788764 357899886 332 68899999999999999999 777765 699999999999999
Q ss_pred EEeeceeeeeeeeeEEEe
Q 008863 531 FNYHDKLLFKKKKRLCLV 548 (550)
Q Consensus 531 ~a~~~~ti~~~r~~~~~~ 548 (550)
+++++++.|.+|++.+..
T Consensus 85 ~~~~~~~~~~~r~~~~~~ 102 (249)
T 4f3p_A 85 VALSGMTIKEERRKAIDF 102 (249)
T ss_dssp EEEEEEECCHHHHTTEEE
T ss_pred EEEeccccCHHHHcCcce
Confidence 999999999999886653
No 59
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=98.33 E-value=8.1e-05 Score=72.17 Aligned_cols=209 Identities=14% Similarity=0.134 Sum_probs=135.3
Q ss_pred cEEEEEEEecCC--ccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhc-CCeEEEEcCCChHHH
Q 008863 34 VTKIGAIVDANS--QMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINK-EKVKVIAGMETWEET 110 (550)
Q Consensus 34 ~i~IG~i~~~~~--~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~-~~v~aiiG~~~s~~~ 110 (550)
..+||+++|... .+-.....+++.+.++. |+.+.+ .+...++....+.+.+++.. .++.+||-.......
T Consensus 3 ~~~Ig~i~p~~~~~~f~~~~~~g~~~~a~~~-----g~~~~~--~~~~~~~~~~~~~i~~~i~~~~~vDgiIi~~~~~~~ 75 (350)
T 3h75_A 3 LTSVVFLNPGNSTETFWVSYSQFMQAAARDL-----GLDLRI--LYAERDPQNTLQQARELFQGRDKPDYLMLVNEQYVA 75 (350)
T ss_dssp CCEEEEEECSCTTCHHHHHHHHHHHHHHHHH-----TCEEEE--EECTTCHHHHHHHHHHHHHSSSCCSEEEEECCSSHH
T ss_pred CCEEEEECCCCCCChHHHHHHHHHHHHHHHc-----CCeEEE--EECCCCHHHHHHHHHHHHhcCCCCCEEEEeCchhhH
Confidence 468999999763 34456667777777775 555554 46777888778888888874 477776643333344
Q ss_pred HHHHHhhccCCccEEeccCCCCCCcccC-------CCC-CeEEEEecCcHHhHHHHHHHHHHcC------C-eEEEEEEE
Q 008863 111 AVVAEIASRVQVPILSFAAPAVTPLSMS-------RRW-PYLIRMASNDSEQMKCIADLARKYN------W-RRVAAIYE 175 (550)
Q Consensus 111 ~~v~~~~~~~~iP~is~~~~~~~~~~~~-------~~~-~~~~~~~p~~~~~~~al~~~l~~~~------w-~~v~ii~~ 175 (550)
..+...+...+||+|..... .+.... ..+ .++..+.++....+..++++|...+ - +++++|..
T Consensus 76 ~~~~~~~~~~giPvV~~~~~--~~~~~~~~~~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~g~~~~~g~~~~i~~i~g 153 (350)
T 3h75_A 76 PQILRLSQGSGIKLFIVNSP--LTLDQRELIGQSRQNYSDWIGSMVGDDEEAGYRMLKELLHKLGPVPAGHGIELLAFSG 153 (350)
T ss_dssp HHHHHHHTTSCCEEEEEESC--CCTTTC------------CEEEEECCHHHHHHHHHHHHHHHHCCCCSSCCEEEEEEES
T ss_pred HHHHHHHHhCCCcEEEEcCC--CChHHHhhhcCCchhccceeeeecCChHHHHHHHHHHHHHHhhhhcCCCCceEEEEeC
Confidence 55566778889999998765 332211 111 1366778888888999999987665 4 89999986
Q ss_pred cCCCCCcchhHHHHHHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcC--CCeEEEEEcCCHHHHHHHHHHHH
Q 008863 176 DNVYGGDSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDK--QSRVFIVLQASLDMTIHLFTEAN 253 (550)
Q Consensus 176 ~~~~g~~~~~~~~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~--~~~~ii~~~~~~~~~~~il~~a~ 253 (550)
...........+.+.+.+++.+ . +.....+.... +.+.....++++.+. +++.|+ +++...+..++++++
T Consensus 154 ~~~~~~~~~R~~Gf~~~l~~~~-~-~~~~~~~~~~~----~~~~~~~~~~~~L~~~~~~~aI~--~~~d~~a~g~~~al~ 225 (350)
T 3h75_A 154 LKVTPAAQLRERGLRRALAEHP-Q-VHLRQLVYGEW----NRERAYRQAQQLLKRYPKTQLVW--SANDEMALGAMQAAR 225 (350)
T ss_dssp CTTSHHHHHHHHHHHHHHHHCT-T-EEEEEEEECTT----CHHHHHHHHHHHHHHCTTEEEEE--ESSHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHCC-C-eEEEEEeeCCC----cHHHHHHHHHHHHHhCCCcCEEE--ECChHHHHHHHHHHH
Confidence 5432111455678888998888 5 22222222211 233444555555443 345544 567788889999999
Q ss_pred HcCCCC
Q 008863 254 RMGLVG 259 (550)
Q Consensus 254 ~~g~~~ 259 (550)
+.|+.-
T Consensus 226 ~~G~~v 231 (350)
T 3h75_A 226 ELGRKP 231 (350)
T ss_dssp HTTCCB
T ss_pred HcCCCC
Confidence 999863
No 60
>2h3h_A Sugar ABC transporter, periplasmic sugar-binding protein; glucose binding protein, periplasmic binding protein, GBP; HET: BGC; 1.70A {Thermotoga maritima} PDB: 2qvc_A* 3c6q_B*
Probab=98.33 E-value=5.6e-05 Score=71.98 Aligned_cols=199 Identities=12% Similarity=0.045 Sum_probs=130.1
Q ss_pred EEEEEEEecCCccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEc-CCChHHHHHH
Q 008863 35 TKIGAIVDANSQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAG-METWEETAVV 113 (550)
Q Consensus 35 i~IG~i~~~~~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG-~~~s~~~~~v 113 (550)
++||++.|...........+++.++++. |+++.+.. .+..++....+...+++. .++.+||. |..+......
T Consensus 2 ~~Ig~i~~~~~~~~~~~~~gi~~~~~~~-----g~~~~~~~-~~~~~~~~~~~~i~~l~~-~~vdgiIi~~~~~~~~~~~ 74 (313)
T 2h3h_A 2 LTIGVIGKSVHPYWSQVEQGVKAAGKAL-----GVDTKFFV-PQKEDINAQLQMLESFIA-EGVNGIAIAPSDPTAVIPT 74 (313)
T ss_dssp CEEEEECSCSSHHHHHHHHHHHHHHHHH-----TCEEEEEC-CSSSCHHHHHHHHHHHHH-TTCSEEEECCSSTTTTHHH
T ss_pred eEEEEEeCCCcHHHHHHHHHHHHHHHHc-----CCEEEEEC-CCCCCHHHHHHHHHHHHH-cCCCEEEEeCCChHHHHHH
Confidence 6899999875334445667777777765 56655432 245677777777778876 58887774 4444333333
Q ss_pred HHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHHc--CCeEEEEEEEcCC--CCCcchhHHHH
Q 008863 114 AEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKY--NWRRVAAIYEDNV--YGGDSGKLALL 189 (550)
Q Consensus 114 ~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~~--~w~~v~ii~~~~~--~g~~~~~~~~l 189 (550)
...+...++|+|..... .+.. +.+..+.+++...+..++++|... |.+++++|..... .. ....+.+
T Consensus 75 ~~~~~~~~iPvV~~~~~--~~~~-----~~~~~V~~d~~~~g~~a~~~L~~~~~G~~~I~~i~~~~~~~~~--~~R~~gf 145 (313)
T 2h3h_A 75 IKKALEMGIPVVTLDTD--SPDS-----GRYVYIGTDNYQAGYTAGLIMKELLGGKGKVVIGTGSLTAMNS--LQRIQGF 145 (313)
T ss_dssp HHHHHHTTCCEEEESSC--CTTS-----CCSCEEECCHHHHHHHHHHHHHHHHTSCSEEEEEESCSSCHHH--HHHHHHH
T ss_pred HHHHHHCCCeEEEeCCC--CCCc-----ceeEEECcCHHHHHHHHHHHHHHHcCCCCEEEEEECCCCCccH--HHHHHHH
Confidence 44556689999998765 2211 123346688888888899998776 9999999987532 23 4566788
Q ss_pred HHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcC--CCeEEEEEcCCHHHHHHHHHHHHHcCCC
Q 008863 190 AEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDK--QSRVFIVLQASLDMTIHLFTEANRMGLV 258 (550)
Q Consensus 190 ~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~--~~~~ii~~~~~~~~~~~il~~a~~~g~~ 258 (550)
++.+++.| +++........ +..+....++++.+. .++.|+. .+...+..+++++++.|+.
T Consensus 146 ~~~l~~~g-~~~~~~~~~~~------~~~~~~~~~~~~l~~~~~~~ai~~--~~d~~a~g~~~al~~~G~p 207 (313)
T 2h3h_A 146 KDAIKDSE-IEIVDILNDEE------DGARAVSLAEAALNAHPDLDAFFG--VYAYNGPAQALVVKNAGKV 207 (313)
T ss_dssp HHHHTTSS-CEEEEEEECSS------CHHHHHHHHHHHHHHCTTCCEEEE--CSTTHHHHHHHHHHHTTCT
T ss_pred HHHhcCCC-CEEEEeecCCC------CHHHHHHHHHHHHHHCcCceEEEE--cCCCccHHHHHHHHHcCCC
Confidence 89999988 87754322111 234445556665543 4577765 4455777899999999953
No 61
>1ii5_A SLR1257 protein; membrane protein; HET: GLU; 1.60A {Synechocystis SP} SCOP: c.94.1.1 PDB: 1iit_A 1iiw_A
Probab=98.33 E-value=5.6e-07 Score=81.72 Aligned_cols=78 Identities=17% Similarity=0.249 Sum_probs=62.7
Q ss_pred CCCeEecccCcccccccEEEecCCCCCCCCCCCcccccchHHHHHHHHHhCCCCCCeEEEecCCChHHHHHhhhcccccE
Q 008863 452 QEPMRIGVPTRTFFEKFVVIKDDPLNGNSNDKNLRYDGFSIELFRLVVDHLNYDLPYEFVPHDGVYDDLINGVYDKVNYF 531 (550)
Q Consensus 452 ~~~~~i~~~~~~~~~pfv~~~~~~~~~~~~~~~~~~~GfciDll~~la~~l~f~~~~~~~~~~g~w~Gmi~el~~~~ad~ 531 (550)
.++++|.+. +++||.+..++. +..+.||++||++++++.+|++ ++++.. +.|+.++..|.+|++|+
T Consensus 3 ~~~l~v~~~---~~~P~~~~~~~~--------~g~~~G~~~dl~~~i~~~~g~~--~~~~~~-~~~~~~~~~l~~g~~D~ 68 (233)
T 1ii5_A 3 AMALKVGVV---GNPPFVFYGEGK--------NAAFTGISLDVWRAVAESQKWN--SEYVRQ-NSISAGITAVAEGELDI 68 (233)
T ss_dssp SCCEEEEEC---CCTTTCEEC-------------CEESHHHHHHHHHHHHHTCC--EEEEEC-SCHHHHHHHHHTTSCSE
T ss_pred CceEEEEec---CCCCeEEEecCC--------CCCEEEEeHHHHHHHHHHcCCc--EEEEEe-CCHHHHHHHHHCCCcCE
Confidence 356788775 368998862111 1268999999999999999998 777764 26999999999999999
Q ss_pred Eeeceeeeeeee
Q 008863 532 NYHDKLLFKKKK 543 (550)
Q Consensus 532 a~~~~ti~~~r~ 543 (550)
++++++++.+|+
T Consensus 69 ~~~~~~~~~~r~ 80 (233)
T 1ii5_A 69 LIGPISVTPERA 80 (233)
T ss_dssp EEEEEECCHHHH
T ss_pred EEeeeecCcccc
Confidence 999999999997
No 62
>1dbq_A Purine repressor; transcription regulation, DNA-binding regulatory protein; 2.20A {Escherichia coli} SCOP: c.93.1.1 PDB: 1jhz_A
Probab=98.33 E-value=3.6e-05 Score=72.36 Aligned_cols=202 Identities=12% Similarity=0.096 Sum_probs=128.0
Q ss_pred CcEEEEEEEecC-CccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEcCCChHHHH
Q 008863 33 EVTKIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEETA 111 (550)
Q Consensus 33 ~~i~IG~i~~~~-~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~~~~ 111 (550)
.+.+||+++|.. .........+++.+.++. |+.+.+ .++..++....+....+++ .++.+||........
T Consensus 6 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~-----g~~~~~--~~~~~~~~~~~~~~~~l~~-~~vdgii~~~~~~~~- 76 (289)
T 1dbq_A 6 HTKSIGLLATSSEAAYFAEIIEAVEKNCFQK-----GYTLIL--GNAWNNLEKQRAYLSMMAQ-KRVDGLLVMCSEYPE- 76 (289)
T ss_dssp --CEEEEEESCTTSHHHHHHHHHHHHHHHHH-----TCEEEE--EECTTCHHHHHHHHHHHHH-TTCSEEEEECSCCCH-
T ss_pred CCCEEEEEeCCCCChHHHHHHHHHHHHHHHc-----CCeEEE--EcCCCChHHHHHHHHHHHh-CCCCEEEEEeccCCH-
Confidence 467899999864 334455667777777764 565554 5666777766666777775 688877752222111
Q ss_pred HHHHhhcc-CCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHHcCCeEEEEEEEcC--CCCCcchhHHH
Q 008863 112 VVAEIASR-VQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDN--VYGGDSGKLAL 188 (550)
Q Consensus 112 ~v~~~~~~-~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~~~w~~v~ii~~~~--~~g~~~~~~~~ 188 (550)
.+...+.. .++|+|..... .+. . ++...+.++....+..++++|...|.+++++|..+. ... ....+.
T Consensus 77 ~~~~~l~~~~~iPvV~~~~~--~~~---~--~~~~~V~~d~~~~~~~~~~~L~~~G~~~i~~i~~~~~~~~~--~~R~~g 147 (289)
T 1dbq_A 77 PLLAMLEEYRHIPMVVMDWG--EAK---A--DFTDAVIDNAFEGGYMAGRYLIERGHREIGVIPGPLERNTG--AGRLAG 147 (289)
T ss_dssp HHHHHHHHTTTSCEEEEECS--SCC---S--SSCEEEEECHHHHHHHHHHHHHHTTCCSEEEECCC--------CHHHHH
T ss_pred HHHHHHHhccCCCEEEEccC--CCc---c--CcCCEEEeCcHHHHHHHHHHHHHCCCCeEEEEecCCccccH--HHHHHH
Confidence 22233333 79999988754 221 1 223356778888889999999888999999998653 234 667788
Q ss_pred HHHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcC--CCeEEEEEcCCHHHHHHHHHHHHHcCCCC
Q 008863 189 LAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDK--QSRVFIVLQASLDMTIHLFTEANRMGLVG 259 (550)
Q Consensus 189 l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~--~~~~ii~~~~~~~~~~~il~~a~~~g~~~ 259 (550)
+.+.+++.| +.+.....+.... +..+....++++.+. .++.|+. .+...+..+++++++.|+.-
T Consensus 148 ~~~~l~~~g-~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~ai~~--~~d~~a~g~~~al~~~G~~v 213 (289)
T 1dbq_A 148 FMKAMEEAM-IKVPESWIVQGDF----EPESGYRAMQQILSQPHRPTAVFC--GGDIMAMGALCAADEMGLRV 213 (289)
T ss_dssp HHHHHHHTT-CCCCGGGBCCCCS----SHHHHHHHHHHHHTSSSCCSEEEE--SCHHHHHHHHHHHHHTTCCT
T ss_pred HHHHHHHCC-CCCChHHeEeCCC----CHHHHHHHHHHHHhCCCCCCEEEE--CCcHHHHHHHHHHHHcCCCC
Confidence 999999988 6543221121111 223444556665543 5677665 56677888999999999863
No 63
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=98.33 E-value=5.4e-05 Score=71.18 Aligned_cols=203 Identities=12% Similarity=0.034 Sum_probs=133.3
Q ss_pred CcEEEEEEEecC-CccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEE-cCCChHHH
Q 008863 33 EVTKIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIA-GMETWEET 110 (550)
Q Consensus 33 ~~i~IG~i~~~~-~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aii-G~~~s~~~ 110 (550)
++.+||+++|.. ..+......+++.+.++. |+.+. +.+...++....+....++. .++.+|| .|..+...
T Consensus 4 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~-----g~~~~--~~~~~~~~~~~~~~~~~l~~-~~vdgiIi~~~~~~~~ 75 (291)
T 3l49_A 4 EGKTIGITAIGTDHDWDLKAYQAQIAEIERL-----GGTAI--ALDAGRNDQTQVSQIQTLIA-QKPDAIIEQLGNLDVL 75 (291)
T ss_dssp TTCEEEEEESCCSSHHHHHHHHHHHHHHHHT-----TCEEE--EEECTTCHHHHHHHHHHHHH-HCCSEEEEESSCHHHH
T ss_pred CCcEEEEEeCCCCChHHHHHHHHHHHHHHHc-----CCEEE--EEcCCCCHHHHHHHHHHHHH-cCCCEEEEeCCChhhh
Confidence 467999999965 233345566666666664 55554 45666777777777777776 4787777 45554555
Q ss_pred HHHHHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHH--cCCeEEEEEEEcCCCCCcchhHHH
Q 008863 111 AVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARK--YNWRRVAAIYEDNVYGGDSGKLAL 188 (550)
Q Consensus 111 ~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~--~~w~~v~ii~~~~~~g~~~~~~~~ 188 (550)
......+...++|+|..... .+ +.+..+..+....+..++++|.. .|.++++++.............+.
T Consensus 76 ~~~~~~~~~~~iPvV~~~~~--~~-------~~~~~V~~D~~~~g~~~~~~l~~~~~g~~~i~~i~~~~~~~~~~~R~~g 146 (291)
T 3l49_A 76 NPWLQKINDAGIPLFTVDTA--TP-------HAINNTTSNNYSIGAELALQMVADLGGKGNVLVFNGFYSVPVCKIRYDQ 146 (291)
T ss_dssp HHHHHHHHHTTCCEEEESCC--CT-------TCSEEEEECHHHHHHHHHHHHHHHHTTCEEEEEECSCTTSHHHHHHHHH
T ss_pred HHHHHHHHHCCCcEEEecCC--CC-------CcCceEecChHHHHHHHHHHHHHHcCCCceEEEEeCCCCCchHHHHHHH
Confidence 55666677789999998765 21 12335678888889999999977 899999999754332111345677
Q ss_pred HHHHHhcC-CCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcC-----CCeEEEEEcCCHHHHHHHHHHHHHcCCC
Q 008863 189 LAEALQNV-SSSEIQSRLVLPPISSISDPKEAVRGELKKVQDK-----QSRVFIVLQASLDMTIHLFTEANRMGLV 258 (550)
Q Consensus 189 l~~~l~~~-g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~-----~~~~ii~~~~~~~~~~~il~~a~~~g~~ 258 (550)
+.+.+++. | +++.....+.... .........++++.+. +++.|+ +.+...+..+++++++.|+.
T Consensus 147 f~~~l~~~~~-~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~ai~--~~~d~~a~g~~~al~~~g~~ 216 (291)
T 3l49_A 147 MKYVLEAFPD-VKIIEPELRDVIP---NTIQSAYSNVTDMLTKYPNEGDVGAIW--ACWDVPMIGATQALQAAGRT 216 (291)
T ss_dssp HHHHHHTCTT-EEECSSCBCCCSS---SHHHHHHHHHHHHHHHCCSTTSCCEEE--ESSHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHCCC-CEEEeeeccCCCC---CCHHHHHHHHHHHHHhCCCcCCcCEEE--ECCCchHHHHHHHHHHcCCC
Confidence 88888888 6 6643322222211 0123334455555443 456665 46778888999999999987
No 64
>2rjo_A Twin-arginine translocation pathway signal protei; PSI-2, NYSGXRC, twin arginine translocation pathway signal P structural genomics; HET: GAL; 2.05A {Burkholderia phytofirmans}
Probab=98.31 E-value=0.00019 Score=68.90 Aligned_cols=205 Identities=10% Similarity=-0.013 Sum_probs=132.9
Q ss_pred CcEEEEEEEecC-CccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCC--eEEEEcC-CChH
Q 008863 33 EVTKIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEK--VKVIAGM-ETWE 108 (550)
Q Consensus 33 ~~i~IG~i~~~~-~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~--v~aiiG~-~~s~ 108 (550)
++.+||+++|.. .........+++.+.++. |+.+. +.++..++....+....+++ .+ +.+||.. ....
T Consensus 4 ~s~~Igvi~~~~~~~~~~~~~~gi~~~a~~~-----g~~l~--~~~~~~~~~~~~~~i~~l~~-~~~~vdgiIi~~~~~~ 75 (332)
T 2rjo_A 4 GQTTLACSFRSLTNPYYTAFNKGAQSFAKSV-----GLPYV--PLTTEGSSEKGIADIRALLQ-KTGGNLVLNVDPNDSA 75 (332)
T ss_dssp CCCEEEEEESCTTSHHHHHHHHHHHHHHHHH-----TCCEE--EEECTTCHHHHHHHHHHHHH-HTTTCEEEEECCSSHH
T ss_pred CccEEEEEecCCCcHHHHHHHHHHHHHHHHc-----CCEEE--EecCCCCHHHHHHHHHHHHH-CCCCCCEEEEeCCCHH
Confidence 567899999854 333345566776666664 55554 45666777766677777776 46 8888764 3333
Q ss_pred HHHHHHHhhccCCccEEeccCCCCCCcccCCC-C-CeEEEEecCcHHhHHHHHHHHHH--cCCeEEEEEEEcCC--CCCc
Q 008863 109 ETAVVAEIASRVQVPILSFAAPAVTPLSMSRR-W-PYLIRMASNDSEQMKCIADLARK--YNWRRVAAIYEDNV--YGGD 182 (550)
Q Consensus 109 ~~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~-~-~~~~~~~p~~~~~~~al~~~l~~--~~w~~v~ii~~~~~--~g~~ 182 (550)
........+...++|+|..... .+...... . +.+..+..+....+..++++|.. .|.+++++|..... ..
T Consensus 76 ~~~~~~~~~~~~~iPvV~~~~~--~~~~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~~~G~~~I~~i~g~~~~~~~-- 151 (332)
T 2rjo_A 76 DARVIVEACSKAGAYVTTIWNK--PKDLHPWDYNPNYVAHLSYDGVAYGEETATQLFKSMGGKGGVVALGGIFSNVPA-- 151 (332)
T ss_dssp HHHHHHHHHHHHTCEEEEESCC--CTTCCGGGGTTTEEEEEECCHHHHHHHHHHHHHHHTTTCEEEEEEECCTTCHHH--
T ss_pred HHHHHHHHHHHCCCeEEEECCC--CCcccchhcccceeEEEccChHHHHHHHHHHHHHHcCCCCeEEEEECCCCCccH--
Confidence 3323444555679999988754 22211011 1 35667888888889999999877 69999999986533 22
Q ss_pred chhHHHHHHHHhcC-CCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcC---CCeEEEEEcCCHHHHHHHHHHHHHcCCC
Q 008863 183 SGKLALLAEALQNV-SSSEIQSRLVLPPISSISDPKEAVRGELKKVQDK---QSRVFIVLQASLDMTIHLFTEANRMGLV 258 (550)
Q Consensus 183 ~~~~~~l~~~l~~~-g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~---~~~~ii~~~~~~~~~~~il~~a~~~g~~ 258 (550)
....+.|.+.+++. | +.+..... ... ...+....++++.+. .++.|+. .+...+..+++++++.|+.
T Consensus 152 ~~R~~Gf~~al~~~pg-i~~~~~~~-~~~-----~~~~~~~~~~~ll~~~~~~~~aI~~--~nd~~A~g~~~al~~~G~~ 222 (332)
T 2rjo_A 152 IERKAGLDAALKKFPG-IQLLDFQV-ADW-----NSQKAFPIMQAWMTRFNSKIKGVWA--ANDDMALGAIEALRAEGLA 222 (332)
T ss_dssp HHHHHHHHHHHHTCTT-EEEEEEEE-CTT-----CHHHHHHHHHHHHHHHGGGEEEEEE--SSHHHHHHHHHHHHHTTCB
T ss_pred HHHHHHHHHHHHhCCC-cEEEeecc-CCC-----CHHHHHHHHHHHHHhcCCCeeEEEE--CCCchHHHHHHHHHHcCCC
Confidence 45667788999998 8 87654321 111 223444455555443 4566554 5667788899999999986
No 65
>2qh8_A Uncharacterized protein; conserved domain protein, structural genomics, PSI-2, MCSG, BIG_563.1, protein structure initiative; HET: HIS; 2.20A {Vibrio cholerae o1 biovar eltor str} PDB: 3lkv_A*
Probab=98.30 E-value=3.7e-05 Score=72.84 Aligned_cols=186 Identities=12% Similarity=0.208 Sum_probs=119.1
Q ss_pred CcEEEEEEEecCCccchhHHHHHHHHHHHHhcCC--CCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEcCCChHHH
Q 008863 33 EVTKIGAIVDANSQMGKQAITAMKIAVQNFNSDS--RNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEET 110 (550)
Q Consensus 33 ~~i~IG~i~~~~~~~g~~~~~a~~~Av~~iN~~~--~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~~~ 110 (550)
++.+||++.+.+...-....+|++.++++ .| .|..+.+.+.|+..++....+.+..+++ .++.+||.... ...
T Consensus 7 ~t~~IGvi~~~~~p~~~~~~~gi~~~l~~---~Gy~~g~~v~l~~~~~~~~~~~~~~~~~~l~~-~~vDgII~~~~-~~~ 81 (302)
T 2qh8_A 7 KTAKVAVSQIVEHPALDATRQGLLDGLKA---KGYEEGKNLEFDYKTAQGNPAIAVQIARQFVG-ENPDVLVGIAT-PTA 81 (302)
T ss_dssp CCEEEEEEESSCCHHHHHHHHHHHHHHHH---TTCCBTTTEEEEEEECTTCHHHHHHHHHHHHH-TCCSEEEEESH-HHH
T ss_pred CCcEEEEEEeccChhHHHHHHHHHHHHHH---cCCCCCCceEEEEecCCCCHHHHHHHHHHHHh-CCCCEEEECCh-HHH
Confidence 57999998544443334555566544444 43 2458888889999999888888888875 68888886432 222
Q ss_pred HHHHHhhccCCccEEeccCCCCCCcc----c--CCCCCeEEEEecCcHHhHHHHHHHHHHc--CCeEEEEEEEcCC-CCC
Q 008863 111 AVVAEIASRVQVPILSFAAPAVTPLS----M--SRRWPYLIRMASNDSEQMKCIADLARKY--NWRRVAAIYEDNV-YGG 181 (550)
Q Consensus 111 ~~v~~~~~~~~iP~is~~~~~~~~~~----~--~~~~~~~~~~~p~~~~~~~al~~~l~~~--~w~~v~ii~~~~~-~g~ 181 (550)
..+.. ...++|+|..+.. ++.. . ....+++.... +.......++++... |.+++++|+.... .+
T Consensus 82 ~~~~~--~~~~iPvV~~~~~--~~~~~~~v~~~~~~~~~~~gv~--~~~~~~~~~~~l~~~~Pg~~~I~~i~~~~~~~~- 154 (302)
T 2qh8_A 82 QALVS--ATKTIPIVFTAVT--DPVGAKLVKQLEQPGKNVTGLS--DLSPVEQHVELIKEILPNVKSIGVVYNPGEANA- 154 (302)
T ss_dssp HHHHH--HCSSSCEEEEEES--CTTTTTSCSCSSSCCSSEEEEE--CCCCHHHHHHHHHHHSTTCCEEEEEECTTCHHH-
T ss_pred HHHHh--cCCCcCEEEEecC--CHhhcCccccccCCCCCEEEEE--CCcCHHHHHHHHHHhCCCCcEEEEEecCCCcch-
Confidence 33333 2679999987654 3321 0 11123344443 222355667788776 9999999997653 24
Q ss_pred cchhHHHHHHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcCCCeEEEEEcCCH
Q 008863 182 DSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASL 242 (550)
Q Consensus 182 ~~~~~~~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~~ii~~~~~~ 242 (550)
....+.+++.+++.| +.+...... ...+....++++.. ++++|+. ..+.
T Consensus 155 -~~r~~g~~~al~~~g-i~~~~~~~~--------~~~~~~~~~~~l~~-~~dai~~-~~D~ 203 (302)
T 2qh8_A 155 -VSLMELLKLSAAKHG-IKLVEATAL--------KSADVQSATQAIAE-KSDVIYA-LIDN 203 (302)
T ss_dssp -HHHHHHHHHHHHHTT-CEEEEEECS--------SGGGHHHHHHHHGG-GCSEEEE-CSCH
T ss_pred -HHHHHHHHHHHHHcC-CEEEEEecC--------ChHHHHHHHHHHhc-cCCEEEE-CCcH
Confidence 556788999999999 887654321 22466677777764 7888887 5544
No 66
>4eq9_A ABC transporter substrate-binding protein-amino A transport; structural genomics, niaid; HET: GSH; 1.40A {Streptococcus pneumoniae}
Probab=98.29 E-value=3.2e-07 Score=84.15 Aligned_cols=79 Identities=14% Similarity=0.265 Sum_probs=65.6
Q ss_pred CCeEecccCcccccccEEEecCCCCCCCCCCCcccccchHHHHHHHHHhCC-CCCCeEEEecCCChHHHHHhhhcccccE
Q 008863 453 EPMRIGVPTRTFFEKFVVIKDDPLNGNSNDKNLRYDGFSIELFRLVVDHLN-YDLPYEFVPHDGVYDDLINGVYDKVNYF 531 (550)
Q Consensus 453 ~~~~i~~~~~~~~~pfv~~~~~~~~~~~~~~~~~~~GfciDll~~la~~l~-f~~~~~~~~~~g~w~Gmi~el~~~~ad~ 531 (550)
++++|+.. ..++||.+. ++. ...||++||++++++.+| ++ +++++. .|..++..|.+|++|+
T Consensus 8 ~~l~v~~~--~~~~P~~~~-~~g----------~~~G~~~dl~~~i~~~~g~~~--~~~~~~--~~~~~~~~l~~g~~D~ 70 (246)
T 4eq9_A 8 KEIIVATN--GSPRPFIYE-ENG----------ELTGYEIEVVRAIFKDSDKYD--VKFEKT--EWSGVFAGLDADRYNM 70 (246)
T ss_dssp EEEEEEEC--CCSTTTSEE-ETT----------EEESHHHHHHHHHHTTCSSEE--EEEEEC--CHHHHHHHHHTTSCSE
T ss_pred CEEEEEeC--CCcCCeEEc-CCC----------CCcccHHHHHHHHHHHcCCce--EEEEeC--CHHHHHHHHhCCCcCE
Confidence 45667654 256889873 332 689999999999999999 88 778776 7999999999999999
Q ss_pred EeeceeeeeeeeeEEEe
Q 008863 532 NYHDKLLFKKKKRLCLV 548 (550)
Q Consensus 532 a~~~~ti~~~r~~~~~~ 548 (550)
+++++++|.+|++.+..
T Consensus 71 ~~~~~~~~~~r~~~~~~ 87 (246)
T 4eq9_A 71 AVNNLSYTKERAEKYLY 87 (246)
T ss_dssp ECSSCCCCHHHHHHEEE
T ss_pred EecccccChhhhhceee
Confidence 99999999999876543
No 67
>2iee_A ORF2, probable ABC transporter extracellular-binding protein YCKB; SR574, NESG, X-RAY, structural genomics, PSI-2; 2.20A {Bacillus subtilis}
Probab=98.28 E-value=4.5e-07 Score=84.76 Aligned_cols=82 Identities=13% Similarity=0.130 Sum_probs=66.9
Q ss_pred CCeEecccCcccccccEEEecCCCCCCCCCCCcccccchHHHHHHHHHhCCCCCCeEEEecCCChHHHHHhhhcccccEE
Q 008863 453 EPMRIGVPTRTFFEKFVVIKDDPLNGNSNDKNLRYDGFSIELFRLVVDHLNYDLPYEFVPHDGVYDDLINGVYDKVNYFN 532 (550)
Q Consensus 453 ~~~~i~~~~~~~~~pfv~~~~~~~~~~~~~~~~~~~GfciDll~~la~~l~f~~~~~~~~~~g~w~Gmi~el~~~~ad~a 532 (550)
++|+|.+. ..++||.+..++. |...+.||++||++++++.+|++ +++++. .|+.++..|.+|++|++
T Consensus 21 ~~l~v~~~--~~~pP~~~~~~~~-------~~g~~~G~~~dl~~~i~~~~g~~--v~~~~~--~~~~~~~~l~~G~~D~~ 87 (271)
T 2iee_A 21 GKIVVATS--GTLYPTSYHDTDS-------GSDKLTGYEVEVVREAAKRLGLK--VEFKEM--GIDGMLTAVNSGQVDAA 87 (271)
T ss_dssp TEEEEEEC--SCBTTTBEEETTT-------TCCEEECHHHHHHHHHHHHTTCE--EEEEEC--CSTTHHHHHHHTSSSEE
T ss_pred CeEEEEEC--CCCCCeeEeCCCC-------CCCCceeeHHHHHHHHHHHcCCe--EEEEEC--CHHHHHHHHHCCCcCEE
Confidence 45677753 3578998875431 11278999999999999999998 777775 69999999999999999
Q ss_pred eeceeeeeeeeeEEE
Q 008863 533 YHDKLLFKKKKRLCL 547 (550)
Q Consensus 533 ~~~~ti~~~r~~~~~ 547 (550)
++.+++|.+|++.+.
T Consensus 88 ~~~~~~t~~r~~~~~ 102 (271)
T 2iee_A 88 ANDIDVTKDREEKFA 102 (271)
T ss_dssp CSSCBCCHHHHTTEE
T ss_pred EeCCcCChhhccceE
Confidence 999999999987654
No 68
>2fvy_A D-galactose-binding periplasmic protein; periplasmic binding protien, hinge, chemotaxis, transport,; HET: BGC; 0.92A {Escherichia coli} SCOP: c.93.1.1 PDB: 1glg_A* 2fw0_A* 2gbp_A* 2qw1_A* 2hph_A* 2ipn_A* 2ipm_A* 2ipl_A* 1gca_A* 1gcg_A 3ga5_A* 3gbp_A*
Probab=98.26 E-value=0.00019 Score=68.07 Aligned_cols=205 Identities=12% Similarity=0.099 Sum_probs=128.3
Q ss_pred cEEEEEEEecC-CccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEcC-CChHHHH
Q 008863 34 VTKIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGM-ETWEETA 111 (550)
Q Consensus 34 ~i~IG~i~~~~-~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG~-~~s~~~~ 111 (550)
+-+||+++|.. .........+++.+.++. |+ +++.+.++..++....+....+++ .++.+||-. .......
T Consensus 2 s~~Igvi~~~~~~~~~~~~~~gi~~~a~~~-----g~-~~~~~~~~~~~~~~~~~~~~~~~~-~~vdgiii~~~~~~~~~ 74 (309)
T 2fvy_A 2 DTRIGVTIYKYDDNFMSVVRKAIEQDAKAA-----PD-VQLLMNDSQNDQSKQNDQIDVLLA-KGVKALAINLVDPAAAG 74 (309)
T ss_dssp CEEEEEEESCTTSHHHHHHHHHHHHHHHTC-----TT-EEEEEEECTTCHHHHHHHHHHHHH-TTCSEEEECCSSGGGHH
T ss_pred CcEEEEEeccCCcHHHHHHHHHHHHHHHhc-----CC-eEEEEecCCCCHHHHHHHHHHHHH-cCCCEEEEeCCCcchhH
Confidence 35799999864 223334455555555443 44 344556777777766667777776 588877753 3333333
Q ss_pred HHHHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHH------------cCCeEEEEEEEcCC-
Q 008863 112 VVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARK------------YNWRRVAAIYEDNV- 178 (550)
Q Consensus 112 ~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~------------~~w~~v~ii~~~~~- 178 (550)
.....+...++|+|..... .+......++.+..+..+....+..++++|.. .|.+++++|.....
T Consensus 75 ~~~~~~~~~~iPvV~~~~~--~~~~~~~~~~~~~~V~~d~~~~g~~~~~~L~~~~~~~~~~~~~g~g~~~i~~i~~~~~~ 152 (309)
T 2fvy_A 75 TVIEKARGQNVPVVFFNKE--PSRKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGH 152 (309)
T ss_dssp HHHHHHHTTTCCEEEESSC--CCHHHHHTCTTEEEEECCHHHHHHHHHHHHHHHHHHCGGGCTTCSSSEEEEEEECSTTC
T ss_pred HHHHHHHHCCCcEEEecCC--CCcccccccCccEEEecCHHHHHHHHHHHHHHHHhhcccccccCCCceEEEEEEcCCCC
Confidence 4445566789999998754 22211111234566788888888888998866 68889999986533
Q ss_pred -CCCcchhHHHHHHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcC----CCeEEEEEcCCHHHHHHHHHHHH
Q 008863 179 -YGGDSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDK----QSRVFIVLQASLDMTIHLFTEAN 253 (550)
Q Consensus 179 -~g~~~~~~~~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~----~~~~ii~~~~~~~~~~~il~~a~ 253 (550)
.. ....+.+.+.+++.| +.+.....+.... +..+....++++.+. .++.|+. .+...+..++++++
T Consensus 153 ~~~--~~R~~gf~~~l~~~g-~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~ai~~--~~d~~a~g~~~al~ 223 (309)
T 2fvy_A 153 PDA--EARTTYVIKELNDKG-IKTEQLQLDTAMW----DTAQAKDKMDAWLSGPNANKIEVVIA--NNDAMAMGAVEALK 223 (309)
T ss_dssp HHH--HHHHHHHHHHHHHTT-CCEEEEEEEECTT----CHHHHHHHHHHHHTSTTGGGCCEEEE--SSHHHHHHHHHHHH
T ss_pred ccH--HHHHHHHHHHHHhcC-CceEEEEEecCCC----CHHHHHHHHHHHHHhCCCCCccEEEE--CCchhHHHHHHHHH
Confidence 22 455677888999888 7654332222111 223344555665543 4666665 56677888999999
Q ss_pred HcC
Q 008863 254 RMG 256 (550)
Q Consensus 254 ~~g 256 (550)
+.|
T Consensus 224 ~~g 226 (309)
T 2fvy_A 224 AHN 226 (309)
T ss_dssp HTT
T ss_pred HcC
Confidence 988
No 69
>3brs_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; 2.00A {Clostridium phytofermentans}
Probab=98.24 E-value=0.00014 Score=68.16 Aligned_cols=202 Identities=13% Similarity=0.073 Sum_probs=129.6
Q ss_pred CcEEEEEEEecC---CccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEcC-CChH
Q 008863 33 EVTKIGAIVDAN---SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGM-ETWE 108 (550)
Q Consensus 33 ~~i~IG~i~~~~---~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG~-~~s~ 108 (550)
++.+||+++|.. .........+++.++++. |+.+.+...++..++....+....++. .++.+||.. ....
T Consensus 4 ~~~~Ig~v~~~~~~~~~~~~~~~~gi~~~a~~~-----g~~~~~~~~~~~~~~~~~~~~~~~l~~-~~vdgii~~~~~~~ 77 (289)
T 3brs_A 4 KQYYMICIPKVLDDSSDFWSVLVEGAQMAAKEY-----EIKLEFMAPEKEEDYLVQNELIEEAIK-RKPDVILLAAADYE 77 (289)
T ss_dssp -CCEEEEECSCCCSSSHHHHHHHHHHHHHHHHH-----TCEEEECCCSSTTCHHHHHHHHHHHHH-TCCSEEEECCSCTT
T ss_pred CCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHc-----CCEEEEecCCCCCCHHHHHHHHHHHHH-hCCCEEEEeCCChH
Confidence 457899999854 234445667777777765 566655443436777766677777776 588887753 3332
Q ss_pred HHHHHHHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHHc-C-CeEEEEEEEcCC--CCCcch
Q 008863 109 ETAVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKY-N-WRRVAAIYEDNV--YGGDSG 184 (550)
Q Consensus 109 ~~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~~-~-w~~v~ii~~~~~--~g~~~~ 184 (550)
........+...++|+|..... .+.. +.+..+.++....+..++++|... | .+++++|..... .. ..
T Consensus 78 ~~~~~~~~~~~~~iPvV~~~~~--~~~~-----~~~~~V~~D~~~~g~~~~~~L~~~~G~~~~i~~i~~~~~~~~~--~~ 148 (289)
T 3brs_A 78 KTYDAAKEIKDAGIKLIVIDSG--MKQD-----IADITVATDNIQAGIRIGAVTKNLVRKSGKIGVISFVKNSKTA--MD 148 (289)
T ss_dssp TTHHHHTTTGGGTCEEEEESSC--CSSC-----CCSEEEECCHHHHHHHHHHHHHHHTSSSCEEEEEESCTTSHHH--HH
T ss_pred HhHHHHHHHHHCCCcEEEECCC--CCCC-----cceEEEeeChHHHHHHHHHHHHHHcCCCceEEEEECCCCCccH--HH
Confidence 2223344556679999987754 2211 224457788888889899998764 6 999999986533 22 45
Q ss_pred hHHHHHHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcC--CCeEEEEEcCCHHHHHHHHHHHHHcCCC
Q 008863 185 KLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDK--QSRVFIVLQASLDMTIHLFTEANRMGLV 258 (550)
Q Consensus 185 ~~~~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~--~~~~ii~~~~~~~~~~~il~~a~~~g~~ 258 (550)
..+.+.+.+++.| ..+.... .... ...+....++++.+. .++.|+. .+...+..+++++++.|+.
T Consensus 149 R~~gf~~~l~~~g-~~~~~~~-~~~~-----~~~~~~~~~~~~l~~~~~~~ai~~--~~d~~a~g~~~al~~~G~~ 215 (289)
T 3brs_A 149 REEGLKIGLSDDS-NKIEAIY-YCDS-----NYDKAYDGTVELLTKYPDISVMVG--LNQYSATGAARAIKDMSLE 215 (289)
T ss_dssp HHHHHHHHHGGGG-GGEEEEE-ECTT-----CHHHHHHHHHHHHHHCTTEEEEEE--SSHHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHhCC-CcEEeee-cCCC-----CHHHHHHHHHHHHHhCCCceEEEE--CCCcchHHHHHHHHhcCCC
Confidence 5677888888888 6543222 1111 233444555555443 4566554 5667788899999999987
No 70
>3o1i_D Periplasmic protein TORT; ligand free, two component sensor, periplasmic binding prote signaling protein; HET: PE4; 2.80A {Vibrio parahaemolyticus} PDB: 3o1h_B* 3o1j_C
Probab=98.22 E-value=5e-05 Score=71.95 Aligned_cols=207 Identities=12% Similarity=-0.038 Sum_probs=131.9
Q ss_pred CcEEEEEEEecC-CccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEE-cCCChHHH
Q 008863 33 EVTKIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIA-GMETWEET 110 (550)
Q Consensus 33 ~~i~IG~i~~~~-~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aii-G~~~s~~~ 110 (550)
++.+||+++|.. ...-.....+++.+.++. |+.+.+...+...++....+....++. .++.+|| .|......
T Consensus 4 ~~~~Igvi~~~~~~~~~~~~~~g~~~~a~~~-----g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~vdgiii~~~~~~~~ 77 (304)
T 3o1i_D 4 SDEKICAIYPHLKDSYWLSVNYGMVSEAEKQ-----GVNLRVLEAGGYPNKSRQEQQLALCTQ-WGANAIILGTVDPHAY 77 (304)
T ss_dssp -CCEEEEEESCSCSHHHHHHHHHHHHHHHHH-----TCEEEEEECSSTTCHHHHHHHHHHHHH-HTCSEEEECCSSTTSS
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHHHHc-----CCeEEEEcCCCCCCHHHHHHHHHHHHH-cCCCEEEEeCCChhHH
Confidence 578999999865 333345556776666665 566555443333387777777788877 4777766 44443322
Q ss_pred HHHHHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHHcC-----CeEEEEEEEcCCCCCcchh
Q 008863 111 AVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYN-----WRRVAAIYEDNVYGGDSGK 185 (550)
Q Consensus 111 ~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~~~-----w~~v~ii~~~~~~g~~~~~ 185 (550)
......+. .++|+|..... .+.......+.+..+.++....+..++++|...+ -++++++............
T Consensus 78 ~~~~~~~~-~~iPvV~~~~~--~~~~~~~~~~~~~~V~~D~~~~g~~a~~~l~~~g~~~~~~~~i~~i~~~~~~~~~~~R 154 (304)
T 3o1i_D 78 EHNLKSWV-GNTPVFATVNQ--LDLDEEQSTLLKGEVGVDWYWMGYEAGKYLAERHPKGSGKTNIALLLGPRTRGGTKPV 154 (304)
T ss_dssp TTTHHHHT-TTSCEEECSSC--CCCCTTTGGGEEEECCCCHHHHHHHHHHHHHTTSBTTTCCEEEEEECCCC-----CHH
T ss_pred HHHHHHHc-CCCCEEEecCC--CcccccCCCceEEEEecCHHHHHHHHHHHHHHhcccCCCCCEEEEEECCCCcchHHHH
Confidence 22334455 89999998654 2211112234566788888889999999998888 8999999765421111566
Q ss_pred HHHHHHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhh-cCCCeEEEEEcCCHHHHHHHHHHHHHcCCC
Q 008863 186 LALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQ-DKQSRVFIVLQASLDMTIHLFTEANRMGLV 258 (550)
Q Consensus 186 ~~~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~-~~~~~~ii~~~~~~~~~~~il~~a~~~g~~ 258 (550)
.+.+.+.+++.| +.+.... .... +.......++++. ...++. |. ++...+..+++++++.|+.
T Consensus 155 ~~gf~~~l~~~~-~~~~~~~--~~~~----~~~~~~~~~~~~l~~~~~~a-i~--~~d~~a~g~~~al~~~g~~ 218 (304)
T 3o1i_D 155 TTGFYEAIKNSD-IHIVDSF--WADN----DKELQRNLVQRVIDMGNIDY-IV--GSAVAIEAAISELRSADKT 218 (304)
T ss_dssp HHHHHHTTTTBT-EEEEECC--CCCS----CHHHHHHHHHHHHHHSCCSE-EE--ECHHHHHHHHHHHTTTTCG
T ss_pred HHHHHHHHhcCC-CEEEEee--cCCC----cHHHHHHHHHHHHcCCCCCE-EE--ecCcchHHHHHHHHhcCCC
Confidence 788999999988 8776533 1111 2233334444443 236677 44 4677888999999999986
No 71
>2y7i_A STM4351; arginine-binding protein; HET: ARG; 1.90A {Salmonella enterica subsp}
Probab=98.22 E-value=8.7e-07 Score=80.24 Aligned_cols=79 Identities=15% Similarity=0.257 Sum_probs=65.1
Q ss_pred CCeEecccCcccccccEEEecCCCCCCCCCCCcccccchHHHHHHHHHhCCCCCCeEEEecCCChHHHHHhhhcccccEE
Q 008863 453 EPMRIGVPTRTFFEKFVVIKDDPLNGNSNDKNLRYDGFSIELFRLVVDHLNYDLPYEFVPHDGVYDDLINGVYDKVNYFN 532 (550)
Q Consensus 453 ~~~~i~~~~~~~~~pfv~~~~~~~~~~~~~~~~~~~GfciDll~~la~~l~f~~~~~~~~~~g~w~Gmi~el~~~~ad~a 532 (550)
++++|... ..++||.+...+. ++.||++||++++++.+|++ +++++. .|+.++..|.+|++|++
T Consensus 6 ~~l~v~~~--~~~~P~~~~~~~g----------~~~G~~~dl~~~i~~~~g~~--~~~~~~--~~~~~~~~l~~g~~D~~ 69 (229)
T 2y7i_A 6 RTLHFGTS--ATYAPYEFVDADN----------KIVGFDIDVANAVCKEMQAE--CSFTNQ--SFDSLIPSLRFKKFDAV 69 (229)
T ss_dssp CEEEEEEC--CCBTTTBEECTTS----------CEESHHHHHHHHHHHHTTCE--EEEEEC--CGGGHHHHHHTTSCSEE
T ss_pred CcEEEEeC--CCcCCceEECCCC----------CCcceeHHHHHHHHHHhCCe--EEEEEc--CHHHHHHHHhCCCceEE
Confidence 45677763 3578998764432 68999999999999999999 777774 79999999999999999
Q ss_pred eeceeeeeeeeeEEE
Q 008863 533 YHDKLLFKKKKRLCL 547 (550)
Q Consensus 533 ~~~~ti~~~r~~~~~ 547 (550)
+++++.+.+|++.+.
T Consensus 70 ~~~~~~~~~r~~~~~ 84 (229)
T 2y7i_A 70 IAGMDMTPKREQQVS 84 (229)
T ss_dssp CSSCBCCHHHHTTSE
T ss_pred EecCccCHHHhccee
Confidence 999999999986543
No 72
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=98.20 E-value=6.3e-05 Score=71.04 Aligned_cols=205 Identities=11% Similarity=0.044 Sum_probs=136.1
Q ss_pred cEEEEEEEecC-CccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEE-cCCChHHHH
Q 008863 34 VTKIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIA-GMETWEETA 111 (550)
Q Consensus 34 ~i~IG~i~~~~-~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aii-G~~~s~~~~ 111 (550)
.++||++.|.. .........+++.+.++. |+.+.+...++..++....+...+++. .++.+|| .|.......
T Consensus 3 ~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~-----g~~~~~~~~~~~~~~~~~~~~i~~l~~-~~vdgiii~~~~~~~~~ 76 (297)
T 3rot_A 3 RDKYYLITHGSQDPYWTSLFQGAKKAAEEL-----KVDLQILAPPGANDVPKQVQFIESALA-TYPSGIATTIPSDTAFS 76 (297)
T ss_dssp CCEEEEECSCCCSHHHHHHHHHHHHHHHHH-----TCEEEEECCSSSCCHHHHHHHHHHHHH-TCCSEEEECCCCSSTTH
T ss_pred eEEEEEEecCCCCchHHHHHHHHHHHHHHh-----CcEEEEECCCCcCCHHHHHHHHHHHHH-cCCCEEEEeCCCHHHHH
Confidence 47999999876 444556677888777775 555554332222578777777888887 5788776 455544444
Q ss_pred HHHHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHHcC--CeEEEEEEEcCCCCCcchhHHHH
Q 008863 112 VVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYN--WRRVAAIYEDNVYGGDSGKLALL 189 (550)
Q Consensus 112 ~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~~~--w~~v~ii~~~~~~g~~~~~~~~l 189 (550)
.....+...+||+|..... .+... ..+.+..+..+....+..++++|...+ -++++++..+..........+.+
T Consensus 77 ~~~~~~~~~giPvV~~~~~--~~~~~--~~~~~~~V~~D~~~~g~~a~~~l~~~g~~~~~i~~i~g~~~~~~~~~R~~Gf 152 (297)
T 3rot_A 77 KSLQRANKLNIPVIAVDTR--PKDKT--KNPYLVFLGSDNLLAGKKLGEKALELTPSAKRALVLNPQPGHIGLEKRAYGI 152 (297)
T ss_dssp HHHHHHHHHTCCEEEESCC--CSCTT--TSCCSCEEECCHHHHHHHHHHHHHHHCTTCCEEEEEESCTTCHHHHHHHHHH
T ss_pred HHHHHHHHCCCCEEEEcCC--Ccccc--ccCcceEEccChHHHHHHHHHHHHHhcCCCceEEEEeCCCCcHHHHHHHHHH
Confidence 4555667789999998765 22211 112344567888889999999998877 89999998654321114566888
Q ss_pred HHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcC--CCeEEEEEcCCHHHHHHHHHHHHHcCCC
Q 008863 190 AEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDK--QSRVFIVLQASLDMTIHLFTEANRMGLV 258 (550)
Q Consensus 190 ~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~--~~~~ii~~~~~~~~~~~il~~a~~~g~~ 258 (550)
++.+++.| +++.... .. . ........++++.+. .++.|+. .+...+..+++++++.|+.
T Consensus 153 ~~~l~~~g-~~~~~~~--~~-~----~~~~~~~~~~~~l~~~~~~~ai~~--~~d~~A~g~~~al~~~g~~ 213 (297)
T 3rot_A 153 KTILQDKG-IFFEELD--VG-T----DPNQVQSRVKSYFKIHPETNIIFC--LTSQALDPLGQMLLHPDRY 213 (297)
T ss_dssp HHHHHHTT-CEEEEEE--CC-S----CHHHHHHHHHHHHHHCTTCCEEEE--SSHHHHHHHHHHHHSHHHH
T ss_pred HHHHHhcC-CeEEEee--cC-C----ChHHHHHHHHHHHHhCCCCCEEEE--cCCcchHHHHHHHHhcCCc
Confidence 99999999 8876543 11 1 234445556654433 4566554 6677788899999998874
No 73
>2x7x_A Sensor protein; transferase, sensor histidine kinase; HET: FRU; 2.64A {Bacteroides thetaiotaomicron}
Probab=98.19 E-value=0.00014 Score=69.63 Aligned_cols=208 Identities=9% Similarity=0.079 Sum_probs=126.9
Q ss_pred CcEEEEEEEecCCccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEcCCChH-HHH
Q 008863 33 EVTKIGAIVDANSQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWE-ETA 111 (550)
Q Consensus 33 ~~i~IG~i~~~~~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~-~~~ 111 (550)
++.+||+++|.+..+......+++.+.++ . .|+.+. +.++..++....+....++. .++.+||...... ...
T Consensus 5 ~~~~Igvi~~~~~~~~~~~~~gi~~~a~~---~-~g~~l~--i~~~~~~~~~~~~~i~~l~~-~~vdgiIi~~~~~~~~~ 77 (325)
T 2x7x_A 5 PHFRIGVAQCSDDSWRHKMNDEILREAMF---Y-NGVSVE--IRSAGDDNSKQAEDVHYFMD-EGVDLLIISANEAAPMT 77 (325)
T ss_dssp -CCEEEEEESCCSHHHHHHHHHHHHHHTT---S-SSCEEE--EEECTTCHHHHHHHHHHHHH-TTCSEEEECCSSHHHHH
T ss_pred CCeEEEEEecCCCHHHHHHHHHHHHHHHH---c-CCcEEE--EeCCCCCHHHHHHHHHHHHH-cCCCEEEEeCCCHHHHH
Confidence 56899999987322222333444444332 1 255554 45666777777777777776 6888887643332 222
Q ss_pred HHHHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHHc--CCeEEEEEEEcCC--CCCcchhHH
Q 008863 112 VVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKY--NWRRVAAIYEDNV--YGGDSGKLA 187 (550)
Q Consensus 112 ~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~~--~w~~v~ii~~~~~--~g~~~~~~~ 187 (550)
.....+...++|+|..... .+.. +.+..+.+++...+..++++|... |.+++++|..... .. ....+
T Consensus 78 ~~~~~~~~~~iPvV~~~~~--~~~~-----~~~~~V~~D~~~~g~~a~~~L~~~~~G~~~I~~i~~~~~~~~~--~~R~~ 148 (325)
T 2x7x_A 78 PIVEEAYQKGIPVILVDRK--ILSD-----KYTAYIGADNYEIGRSVGNYIASSLKGKGNIVELTGLSGSTPA--MERHQ 148 (325)
T ss_dssp HHHHHHHHTTCCEEEESSC--CSSS-----CSSEEEEECHHHHHHHHHHHHHHHTTTEEEEEEEESCTTSHHH--HHHHH
T ss_pred HHHHHHHHCCCeEEEeCCC--CCCc-----ceeEEEecCHHHHHHHHHHHHHHHcCCCceEEEEECCCCCccH--HHHHH
Confidence 3344556679999988754 2211 123356678888888889988664 9999999986533 22 44567
Q ss_pred HHHHHHhcC-CCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcC--CCeEEEEEcCCHHHHHHHHHHHHHcCCCCCCEEE
Q 008863 188 LLAEALQNV-SSSEIQSRLVLPPISSISDPKEAVRGELKKVQDK--QSRVFIVLQASLDMTIHLFTEANRMGLVGKDSVW 264 (550)
Q Consensus 188 ~l~~~l~~~-g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~--~~~~ii~~~~~~~~~~~il~~a~~~g~~~~~~~~ 264 (550)
.+.+.+++. | +.+.... .... ...+....++++.+. .++.|+. .+...+..+++++++.|+ +.+...
T Consensus 149 Gf~~al~~~pg-~~~~~~~-~~~~-----~~~~~~~~~~~ll~~~~~~~aI~~--~nd~~A~g~~~al~~~Gi-p~dv~v 218 (325)
T 2x7x_A 149 GFMAAISKFPD-IKLIDKA-DAAW-----ERGPAEIEMDSMLRRHPKIDAVYA--HNDRIAPGAYQAAKMAGR-EKEMIF 218 (325)
T ss_dssp HHHHHHHTCTE-EEEEEEE-ECTT-----SHHHHHHHHHHHHHHCSCCCEEEE--SSTTHHHHHHHHHHHTTC-TTSSEE
T ss_pred HHHHHHHhCCC-CEEEeee-cCCC-----CHHHHHHHHHHHHHhCCCCCEEEE--CCCchHHHHHHHHHHcCC-CCCeEE
Confidence 788888888 7 7765322 1111 223334445555432 5677765 555677888999999997 333333
Q ss_pred EE
Q 008863 265 IV 266 (550)
Q Consensus 265 i~ 266 (550)
++
T Consensus 219 ig 220 (325)
T 2x7x_A 219 VG 220 (325)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 74
>3d02_A Putative LACI-type transcriptional regulator; periplasmic sugar-binding protein, structura genomics; HET: MSE GOL; 1.30A {Klebsiella pneumoniae subsp}
Probab=98.19 E-value=0.00027 Score=66.83 Aligned_cols=205 Identities=11% Similarity=0.007 Sum_probs=127.1
Q ss_pred CcEEEEEEEecC-CccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEE-cCCChHHH
Q 008863 33 EVTKIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIA-GMETWEET 110 (550)
Q Consensus 33 ~~i~IG~i~~~~-~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aii-G~~~s~~~ 110 (550)
++.+||++.|.. .........+++.+.++. |+.+.+ ..++..++....+...+++. .++.+|| .+..+...
T Consensus 3 ~~~~Ig~i~~~~~~~~~~~~~~g~~~~~~~~-----g~~~~~-~~~~~~~~~~~~~~~~~l~~-~~vdgiii~~~~~~~~ 75 (303)
T 3d02_A 3 AEKTVVNISKVDGMPWFNRMGEGVVQAGKEF-----NLNASQ-VGPSSTDAPQQVKIIEDLIA-RKVDAITIVPNDANVL 75 (303)
T ss_dssp -CEEEEEECSCSSCHHHHHHHHHHHHHHHHT-----TEEEEE-ECCSSSCHHHHHHHHHHHHH-TTCSEEEECCSCHHHH
T ss_pred CceEEEEEeccCCChHHHHHHHHHHHHHHHc-----CCEEEE-ECCCCCCHHHHHHHHHHHHH-cCCCEEEEecCChHHH
Confidence 468999999865 344456667777777765 444432 23466787777777777776 5888766 45544444
Q ss_pred HHHHHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHH-cCCe-EEEEEEEcCCCCCcchhHHH
Q 008863 111 AVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARK-YNWR-RVAAIYEDNVYGGDSGKLAL 188 (550)
Q Consensus 111 ~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~-~~w~-~v~ii~~~~~~g~~~~~~~~ 188 (550)
......+...++|+|..... .. . .+.+..+..+....+..++++|.. .|.+ +++++.............+.
T Consensus 76 ~~~~~~~~~~~ipvV~~~~~--~~-~----~~~~~~v~~d~~~~g~~a~~~l~~~~g~~~~i~~i~g~~~~~~~~~R~~g 148 (303)
T 3d02_A 76 EPVFKKARDAGIVVLTNESP--GQ-P----SANWDVEIIDNEKFAAEYVEHMAKRMGGKGGYVIYVGSLTVPQHNLWADL 148 (303)
T ss_dssp HHHHHHHHHTTCEEEEESCT--TC-T----TCSEEEESSCHHHHHHHHHHHHHHHTTTCEEEEEECSCSSCHHHHHHHHH
T ss_pred HHHHHHHHHCCCeEEEEecC--CC-C----CCceEEEecCHHHHHHHHHHHHHHHhCcCceEEEEecCCCCccHHHHHHH
Confidence 44445566789999987643 11 1 123445678888888889999876 8887 99988754321101345677
Q ss_pred HHHHHhcCC-CeEEEEEeecCCCCCCCCChHHHHHHHHHhhcC--CCeEEEEEcCCHHHHHHHHHHHHHcCCC
Q 008863 189 LAEALQNVS-SSEIQSRLVLPPISSISDPKEAVRGELKKVQDK--QSRVFIVLQASLDMTIHLFTEANRMGLV 258 (550)
Q Consensus 189 l~~~l~~~g-~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~--~~~~ii~~~~~~~~~~~il~~a~~~g~~ 258 (550)
+++.+++.+ .+++.... +.... ...+....++++.+. .++.|+. .+...+..+++++++.|+.
T Consensus 149 f~~~l~~~~~~~~~~~~~-~~~~~----~~~~~~~~~~~~l~~~~~~~ai~~--~~d~~a~g~~~al~~~g~~ 214 (303)
T 3d02_A 149 LVKYQKEHYPDMHEVTRR-MPVAE----SVDDSRRTTLDLMKTYPDLKAVVS--FGSNGPIGAGRAVKEKRAK 214 (303)
T ss_dssp HHHHHHHHCTTEEESSSC-BSCTT----CHHHHHHHHHHHHHHCTTEEEEEE--SSTTHHHHHHHHHHHTTCT
T ss_pred HHHHHHhhCCCCEEEEee-cCCCC----CHHHHHHHHHHHHHhCCCCCEEEE--eCCcchhHHHHHHHhcCCC
Confidence 788887643 04432211 11111 234445566665544 3455554 4556778899999999987
No 75
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=98.19 E-value=0.00045 Score=65.33 Aligned_cols=211 Identities=14% Similarity=0.009 Sum_probs=133.9
Q ss_pred cEEEEEEEecC-CccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEc-CCChHHHH
Q 008863 34 VTKIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAG-METWEETA 111 (550)
Q Consensus 34 ~i~IG~i~~~~-~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG-~~~s~~~~ 111 (550)
.-+||++.+.. ...-.....+++.+.++. |+.+.+. .++..++....+....++. .++.+||- |.......
T Consensus 4 ~~~I~~i~~~~~~~~~~~~~~gi~~~a~~~-----g~~~~~~-~~~~~~~~~~~~~i~~l~~-~~vdgiIi~~~~~~~~~ 76 (305)
T 3g1w_A 4 NETYMMITFQSGMDYWKRCLKGFEDAAQAL-----NVTVEYR-GAAQYDIQEQITVLEQAIA-KNPAGIAISAIDPVELT 76 (305)
T ss_dssp -CEEEEEESSTTSTHHHHHHHHHHHHHHHH-----TCEEEEE-ECSSSCHHHHHHHHHHHHH-HCCSEEEECCSSTTTTH
T ss_pred CceEEEEEccCCChHHHHHHHHHHHHHHHc-----CCEEEEe-CCCcCCHHHHHHHHHHHHH-hCCCEEEEcCCCHHHHH
Confidence 46899999876 333446667777777775 5666542 4677788777777777776 47877764 43433333
Q ss_pred HHHHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHHc--CCeEEEEEEEcCCCCCcchhHHHH
Q 008863 112 VVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKY--NWRRVAAIYEDNVYGGDSGKLALL 189 (550)
Q Consensus 112 ~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~~--~w~~v~ii~~~~~~g~~~~~~~~l 189 (550)
.....+...++|+|..... .+.. +.+..+.++....+..++++|... |.++++++...... ......+.+
T Consensus 77 ~~~~~~~~~~iPvV~~~~~--~~~~-----~~~~~V~~d~~~~g~~~~~~l~~~~~g~~~i~~i~~~~~~-~~~~R~~gf 148 (305)
T 3g1w_A 77 DTINKAVDAGIPIVLFDSG--APDS-----HAHSFLGTNNYNAGMNAAYKMAELLDGEGEVAVITLPNQL-NHQERTTGF 148 (305)
T ss_dssp HHHHHHHHTTCCEEEESSC--CTTS-----CCSCEEECCHHHHHHHHHHHHHHHTTTCEEEEEEECTTCH-HHHHHHHHH
T ss_pred HHHHHHHHCCCcEEEECCC--CCCC-----ceeEEECcCHHHHHHHHHHHHHHHhCCCcEEEEEeCCCcc-cHHHHHHHH
Confidence 3445566789999998765 2221 112346788888999999999877 99999999865431 114556778
Q ss_pred HHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcC--CCeEEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEEe
Q 008863 190 AEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDK--QSRVFIVLQASLDMTIHLFTEANRMGLVGKDSVWIVT 267 (550)
Q Consensus 190 ~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~--~~~~ii~~~~~~~~~~~il~~a~~~g~~~~~~~~i~~ 267 (550)
++.+++.+ ..+.......... +.......++++.+. ++++|+ +.+...+..+++++++.|+. .+...+..
T Consensus 149 ~~~l~~~~-~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~ai~--~~~d~~a~g~~~al~~~g~~-~di~vig~ 220 (305)
T 3g1w_A 149 KETLEAEF-PAIEVIAVEDGRG----DSLHSRRVAHQLLEDYPNLAGIF--ATEANGGVGVGDAVRLESRA-GEIQIISF 220 (305)
T ss_dssp HHHHHHHC-TTEEEEEEEECTT----CHHHHHHHHHHHHHHCTTEEEEE--ESSHHHHHHHHHHHHHTTCT-TTSEEEEE
T ss_pred HHHHHhhC-CCCEEEEEecCCC----CHHHHHHHHHHHHHhCCCceEEE--ECCCcchhhHHHHHHhcCCC-CCeEEEEe
Confidence 88888766 4443322222111 233444555555443 455554 46777888999999999987 44344443
No 76
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=98.18 E-value=6.6e-05 Score=69.78 Aligned_cols=210 Identities=10% Similarity=0.059 Sum_probs=132.7
Q ss_pred cEEEEEEEecC-CccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEcCCChHHHHH
Q 008863 34 VTKIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEETAV 112 (550)
Q Consensus 34 ~i~IG~i~~~~-~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~~~~~ 112 (550)
+-+||+++|.. ...-.....+++.+.++. |+.+.+ .++..++....+....+++ .++.+||-.........
T Consensus 2 s~~Igvi~~~~~~~~~~~~~~gi~~~a~~~-----g~~~~~--~~~~~~~~~~~~~~~~l~~-~~vdgiIi~~~~~~~~~ 73 (272)
T 3o74_A 2 TRTLGFILPDLENPSYARIAKQLEQGARAR-----GYQLLI--ASSDDQPDSERQLQQLFRA-RRCDALFVASCLPPEDD 73 (272)
T ss_dssp CCEEEEEESCTTCHHHHHHHHHHHHHHHHT-----TCEEEE--EECTTCHHHHHHHHHHHHH-TTCSEEEECCCCCSSCC
T ss_pred ceEEEEEeCCCcChhHHHHHHHHHHHHHHC-----CCEEEE--EeCCCCHHHHHHHHHHHHH-cCCCEEEEecCccccHH
Confidence 35799999875 233345556666666553 566554 4566677666666667765 57877774322211123
Q ss_pred HHHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHHcCCeEEEEEEEcCCCCCcchhHHHHHHH
Q 008863 113 VAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLAEA 192 (550)
Q Consensus 113 v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~~~w~~v~ii~~~~~~g~~~~~~~~l~~~ 192 (550)
....+...++|+|..... .+. .. +..+..+....+..++++|...|.++++++.............+.+.+.
T Consensus 74 ~~~~~~~~~iPvV~~~~~--~~~---~~---~~~V~~d~~~~~~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~gf~~~ 145 (272)
T 3o74_A 74 SYRELQDKGLPVIAIDRR--LDP---AH---FCSVISDDRDASRQLAASLLSSAPRSIALIGARPELSVSQARAGGFDEA 145 (272)
T ss_dssp HHHHHHHTTCCEEEESSC--CCT---TT---CEEEEECHHHHHHHHHHHHHTTCCSEEEEEEECTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCEEEEccC--CCc---cc---cCEEEEchHHHHHHHHHHHHHCCCcEEEEEecCCCCccHHHHHHHHHHH
Confidence 334556679999987765 221 11 2346678888889999999989999999998765321114567788899
Q ss_pred HhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcC---CCeEEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEEec
Q 008863 193 LQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDK---QSRVFIVLQASLDMTIHLFTEANRMGLVGKDSVWIVTN 268 (550)
Q Consensus 193 l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~---~~~~ii~~~~~~~~~~~il~~a~~~g~~~~~~~~i~~~ 268 (550)
+++.| +.+........ +..+....++++.+. .++.|+. .+...+..+++++++.|+.+.+...++.+
T Consensus 146 l~~~~-~~~~~~~~~~~------~~~~~~~~~~~~l~~~~~~~~ai~~--~~d~~a~g~~~al~~~g~vp~di~vvg~d 215 (272)
T 3o74_A 146 LQGYT-GEVRRYQGEAF------SRECGQRLMQQLIDDLGGLPDALVT--TSYVLLQGVFDTLQARPVDSRQLQLGTFG 215 (272)
T ss_dssp TTTCC-SEEEEEEESSS------SHHHHHHHHHHHHHHHTSCCSEEEE--SSHHHHHHHHHHHHTSCGGGCCCEEEEES
T ss_pred HHHcC-CChheeecCCC------CHHHHHHHHHHHHhcCCCCCcEEEE--eCchHHHHHHHHHHHcCCCccceEEEEeC
Confidence 99999 87654332111 223444445554433 3677665 66778889999999999844444444433
No 77
>2qu7_A Putative transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus saprophyticus subsp}
Probab=98.18 E-value=3.2e-05 Score=72.74 Aligned_cols=202 Identities=9% Similarity=0.081 Sum_probs=124.7
Q ss_pred CcEEEEEEEecCCccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEcCCChHHHHH
Q 008863 33 EVTKIGAIVDANSQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEETAV 112 (550)
Q Consensus 33 ~~i~IG~i~~~~~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~~~~~ 112 (550)
++.+||+++|.+.........+++.++++. |+.+.+ .++..++....+....++. .++.+||..........
T Consensus 7 ~~~~Igvi~~~~~~~~~~~~~gi~~~~~~~-----g~~~~~--~~~~~~~~~~~~~~~~l~~-~~vdgiI~~~~~~~~~~ 78 (288)
T 2qu7_A 7 RSNIIAFIVPDQNPFFTEVLTEISHECQKH-----HLHVAV--ASSEENEDKQQDLIETFVS-QNVSAIILVPVKSKFQM 78 (288)
T ss_dssp CEEEEEEEESSCCHHHHHHHHHHHHHHGGG-----TCEEEE--EECTTCHHHHHHHHHHHHH-TTEEEEEECCSSSCCCC
T ss_pred CCCEEEEEECCCCchHHHHHHHHHHHHHHC-----CCEEEE--EeCCCCHHHHHHHHHHHHH-cCccEEEEecCCCChHH
Confidence 578999999873223334455555555442 566544 5666777666666777775 68998886433221122
Q ss_pred HHHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHHcCCeEEEEEEEcCC--CCCcchhHHHHH
Q 008863 113 VAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNV--YGGDSGKLALLA 190 (550)
Q Consensus 113 v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~~~w~~v~ii~~~~~--~g~~~~~~~~l~ 190 (550)
+..+ .++|+|..... .+. +.+..+..++...+..++++|...|.+++++|..... .. ....+.|.
T Consensus 79 ~~~l---~~iPvV~~~~~--~~~------~~~~~V~~d~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~--~~R~~gf~ 145 (288)
T 2qu7_A 79 KREW---LKIPIMTLDRE--LES------TSLPSITVDNEEAAYIATKRVLESTCKEVGLLLANPNISTT--IGRKNGYN 145 (288)
T ss_dssp CGGG---GGSCEEEESCC--CSS------CCCCEEEECHHHHHHHHHHHHHTSSCCCEEEEECCTTSHHH--HHHHHHHH
T ss_pred HHHh---cCCCEEEEecc--cCC------CCCCEEEECcHHHHHHHHHHHHHcCCCcEEEEecCCCCCCH--HHHHHHHH
Confidence 2222 68999987754 221 1233567788888899999998889999999986533 23 45567788
Q ss_pred HHHhcCCCeEEEEEeec--CCCCCCC-CChHHHHHHHHHhhcCCCeEEEEEcCCHHHHHHHHHHHHHcCCCC
Q 008863 191 EALQNVSSSEIQSRLVL--PPISSIS-DPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGLVG 259 (550)
Q Consensus 191 ~~l~~~g~~~v~~~~~~--~~~~~~~-~~~~d~~~~l~~i~~~~~~~ii~~~~~~~~~~~il~~a~~~g~~~ 259 (550)
+.+++.| +.+.....+ .. .... ....+-...++++.+.+++.|+. .+...+..+++++++.|+.-
T Consensus 146 ~~l~~~g-~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~ai~~--~~d~~a~g~~~al~~~g~~v 213 (288)
T 2qu7_A 146 KAISEFD-LNVNPSLIHYSDQ-QLGTNAQIYSGYEATKTLLSKGIKGIVA--TNHLLLLGALQAIKESEKEI 213 (288)
T ss_dssp HHHHHTT-CCCCGGGEEECCS-SCSHHHHHHHHHHHHHHHHHTTCCEEEE--CSHHHHHHHHHHHHHSSCCB
T ss_pred HHHHHcC-CCCCcceEEeccC-CccccCCHHHHHHHHHHHHhcCCCEEEE--CCcHHHHHHHHHHHHhCCCC
Confidence 8898888 765321111 11 1000 01122233444444337787765 45667788999999999853
No 78
>3lft_A Uncharacterized protein; ABC, ATPase, cassette, L-Trp, PSI, MCSG, structural genomics center for structural genomics; HET: MSE TRP; 1.35A {Streptococcus pneumoniae}
Probab=98.18 E-value=0.00021 Score=67.27 Aligned_cols=200 Identities=11% Similarity=0.179 Sum_probs=125.9
Q ss_pred cEEEEEEEecCCccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEcCCChHHHHHH
Q 008863 34 VTKIGAIVDANSQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEETAVV 113 (550)
Q Consensus 34 ~i~IG~i~~~~~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~~~~~v 113 (550)
+.+||++-+.+...-....+|++-++++.+- .|..+.+.+.|+..++....+.+..+.+ .++.+||.... .....+
T Consensus 2 ~~~Igvi~~~~~p~~~~i~~gi~~~l~~~gy--~g~~v~l~~~~~~~~~~~~~~~~~~l~~-~~vDgII~~~~-~~~~~~ 77 (295)
T 3lft_A 2 NAKIGVLQFVSHPSLDLIYKGIQDGLAEEGY--KDDQVKIDFMNSEGDQSKVATMSKQLVA-NGNDLVVGIAT-PAAQGL 77 (295)
T ss_dssp CEEEEEEECSCCHHHHHHHHHHHHHHHHTTC--CGGGEEEEEEECTTCHHHHHHHHHHHTT-SSCSEEEEESH-HHHHHH
T ss_pred ceEEEEEEccCChhHHHHHHHHHHHHHHcCC--CCCceEEEEecCCCCHHHHHHHHHHHHh-cCCCEEEECCc-HHHHHH
Confidence 4689988333333334555666655555321 2348888888999999887777777775 68888886432 222233
Q ss_pred HHhhccCCccEEeccCCCCCCccc------CCCCCeEEEEecCcHHhHHHHHHHHHHc--CCeEEEEEEEcCC-CCCcch
Q 008863 114 AEIASRVQVPILSFAAPAVTPLSM------SRRWPYLIRMASNDSEQMKCIADLARKY--NWRRVAAIYEDNV-YGGDSG 184 (550)
Q Consensus 114 ~~~~~~~~iP~is~~~~~~~~~~~------~~~~~~~~~~~p~~~~~~~al~~~l~~~--~w~~v~ii~~~~~-~g~~~~ 184 (550)
.. ...++|+|..+.. ++... ......+..+. +...+...+++|... |.+++++|+.+.. .+ ..
T Consensus 78 ~~--~~~~iPvV~~~~~--~~~~~~~v~~~~~~~~~~~gv~--~~~~~~~~~~~l~~~~pg~~~I~~i~~~~~~~~--~~ 149 (295)
T 3lft_A 78 AS--ATKDLPVIMAAIT--DPIGANLVKDLKKPGGNVTGVS--DHNPAQQQVELIKALTPNVKTIGALYSSSEDNS--KT 149 (295)
T ss_dssp HH--HCSSSCEEEESCS--CTTTTTSCSCSSCCCSSEEEEE--ECCCHHHHHHHHHHHCTTCCEEEEEEETTCHHH--HH
T ss_pred HH--cCCCCCEEEEecc--ChhhcCccccccCCCCcEEEEE--CCccHHHHHHHHHHhCCCCcEEEEEeCCCCcch--HH
Confidence 32 2478999987654 33211 01112333333 233456667888776 8999999998754 23 45
Q ss_pred hHHHHHHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcCCCeEEEEEcCCHHHHHHHHHHHHHcCC
Q 008863 185 KLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGL 257 (550)
Q Consensus 185 ~~~~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~~ii~~~~~~~~~~~il~~a~~~g~ 257 (550)
..+.+++.+++.| +.+...... ...+....++++.. ++++|+. ..+ ..+...++++.+.+.
T Consensus 150 r~~g~~~al~~~g-i~~~~~~~~--------~~~~~~~~~~~l~~-~~dai~~-~~D-~~a~g~~~~l~~~~~ 210 (295)
T 3lft_A 150 QVEEFKAYAEKAG-LTVETFAVP--------STNEIASTVTVMTS-KVDAIWV-PID-NTIASGFPTVVSSNQ 210 (295)
T ss_dssp HHHHHHHHHHHTT-CEEEEEEES--------SGGGHHHHHHHHTT-TCSEEEE-CSC-HHHHHTHHHHHHHTT
T ss_pred HHHHHHHHHHHcC-CEEEEEecC--------CHHHHHHHHHHHHh-cCCEEEE-CCc-hhHHHHHHHHHHHHH
Confidence 6788999999999 887654322 12466677777764 7888887 554 445556677777764
No 79
>3mpk_A Virulence sensor protein BVGS; venus flytrap, sensor domain, signaling protein; 2.04A {Bordetella pertussis} PDB: 3mpl_A
Probab=98.16 E-value=1.6e-06 Score=80.74 Aligned_cols=81 Identities=14% Similarity=0.295 Sum_probs=65.3
Q ss_pred CCCeEecccCcccccccEEEecCCCCCCCCCCCcccccchHHHHHHHHHhCCCCCCeEEEecCCChHHHHHhhhcccccE
Q 008863 452 QEPMRIGVPTRTFFEKFVVIKDDPLNGNSNDKNLRYDGFSIELFRLVVDHLNYDLPYEFVPHDGVYDDLINGVYDKVNYF 531 (550)
Q Consensus 452 ~~~~~i~~~~~~~~~pfv~~~~~~~~~~~~~~~~~~~GfciDll~~la~~l~f~~~~~~~~~~g~w~Gmi~el~~~~ad~ 531 (550)
.++++|+.. ..++||.+..++. .+.||++||+++|++.+|++ +++++. ..|+.++..|.+|++|+
T Consensus 31 ~~~l~v~~~--~~~~P~~~~~~~g----------~~~G~~~dl~~~i~~~lg~~--~~~~~~-~~~~~~~~~l~~G~~D~ 95 (267)
T 3mpk_A 31 HPVVKVAVL--NLFAPFTLFRTDE----------QFGGISAAVLQLLQLRTGLD--FEIIGV-DTVEELIAKLRSGEADM 95 (267)
T ss_dssp CSEEEEEEE--TEETTTEECCTTC----------CCBSHHHHHHHHHHHHHCCE--EEEEEE-SSHHHHHHHHHHTSCSE
T ss_pred CCcEEEEeC--CCCCCeEEECCCC----------cEeeeHHHHHHHHHHHHCCe--EEEEec-CCHHHHHHHHHCCCccE
Confidence 355677763 3478998864332 68999999999999999999 777754 36999999999999999
Q ss_pred EeeceeeeeeeeeEEEe
Q 008863 532 NYHDKLLFKKKKRLCLV 548 (550)
Q Consensus 532 a~~~~ti~~~r~~~~~~ 548 (550)
+. +++.|.+|++.+..
T Consensus 96 ~~-~~~~t~~r~~~~~f 111 (267)
T 3mpk_A 96 AG-ALFVNSARESFLSF 111 (267)
T ss_dssp EE-EEECCGGGTTTEEE
T ss_pred Ee-cccCChhhhcceEe
Confidence 64 99999999986653
No 80
>2vk2_A YTFQ, ABC transporter periplasmic-binding protein YTFQ; transport protein, galactofuranose; HET: GZL; 1.20A {Escherichia coli}
Probab=98.16 E-value=0.00021 Score=67.73 Aligned_cols=205 Identities=14% Similarity=0.083 Sum_probs=125.6
Q ss_pred cEEEEEEEecC-CccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEcCC-ChHHHH
Q 008863 34 VTKIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGME-TWEETA 111 (550)
Q Consensus 34 ~i~IG~i~~~~-~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG~~-~s~~~~ 111 (550)
+++||++.|.. ..+......+++.+.++. |+.+. +.++..++....+....++. .++.+||... ......
T Consensus 2 ~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~-----g~~l~--~~~~~~~~~~~~~~i~~l~~-~~vdgiIi~~~~~~~~~ 73 (306)
T 2vk2_A 2 PLTVGFSQVGSESGWRAAETNVAKSEAEKR-----GITLK--IADGQQKQENQIKAVRSFVA-QGVDAIFIAPVVATGWE 73 (306)
T ss_dssp CCEEEEEECCCCSHHHHHHHHHHHHHHHHH-----TCEEE--EEECTTCHHHHHHHHHHHHH-HTCSEEEECCSSSSSCH
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHHHc-----CCEEE--EeCCCCCHHHHHHHHHHHHH-cCCCEEEEeCCChhhHH
Confidence 57999999975 334445566777666664 55554 45666777666666777776 4788777533 222112
Q ss_pred HHHHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHHcC---CeEEEEEEEcCCCCCcchhHHH
Q 008863 112 VVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYN---WRRVAAIYEDNVYGGDSGKLAL 188 (550)
Q Consensus 112 ~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~~~---w~~v~ii~~~~~~g~~~~~~~~ 188 (550)
.....+...++|+|..... .+.... .+++..+..+....+..++++|...+ .+++++|.............+.
T Consensus 74 ~~~~~~~~~~iPvV~~~~~--~~~~~~--~~~~~~V~~D~~~~g~~a~~~L~~~g~g~~~~I~~i~~~~~~~~~~~R~~G 149 (306)
T 2vk2_A 74 PVLKEAKDAEIPVFLLDRS--IDVKDK--SLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKG 149 (306)
T ss_dssp HHHHHHHHTTCCEEEESSC--CCCSCG--GGSSEEEECCHHHHHHHHHHHHHHHHTTSCEEEEEEECSTTCHHHHHHHHH
T ss_pred HHHHHHHHCCCCEEEecCC--CCCCCc--cceEEEEecCHHHHHHHHHHHHHHhcCCCCCeEEEEEcCCCChhHHHHHHH
Confidence 2334455679999987754 221110 01234567888888888888887765 7999999875331101445677
Q ss_pred HHHHHhcCCCe-EEEEEeecCCCCCCCCChHHHHHHHHHhhc-----CCCeEEEEEcCCHHHHHHHHHHHHHcCCCC
Q 008863 189 LAEALQNVSSS-EIQSRLVLPPISSISDPKEAVRGELKKVQD-----KQSRVFIVLQASLDMTIHLFTEANRMGLVG 259 (550)
Q Consensus 189 l~~~l~~~g~~-~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~-----~~~~~ii~~~~~~~~~~~il~~a~~~g~~~ 259 (550)
+++.+++.| . .+.... .... ...+....++++.+ ..++.|+. .+...+..+++++++.|+.-
T Consensus 150 f~~al~~~g-~~~~~~~~-~~~~-----~~~~~~~~~~~ll~~~~~~~~~~ai~~--~nd~~A~g~~~al~~~G~~v 217 (306)
T 2vk2_A 150 FAEAIKNAP-NIKIIRSQ-SGDF-----TRSKGKEVMESFIKAENNGKNICMVYA--HNDDMVIGAIQAIKEAGLKP 217 (306)
T ss_dssp HHHHTTTCT-TEEEEEEE-ECTT-----CHHHHHHHHHHHHHHTTTTTTCCEEEE--SSHHHHHHHHHHHHHTTCCB
T ss_pred HHHHHhhCC-CeEEEEec-cCCC-----cHHHHHHHHHHHHHhCCCCCCeeEEEE--CCchHHHHHHHHHHHcCCCC
Confidence 888888888 5 222211 1111 22333344444433 35677665 56677888999999999863
No 81
>1wdn_A GLNBP, glutamine binding protein; closed form, complex, peptide, complex (binding protein/peptide); 1.94A {Escherichia coli} SCOP: c.94.1.1 PDB: 1ggg_A
Probab=98.15 E-value=1.6e-06 Score=78.24 Aligned_cols=78 Identities=19% Similarity=0.345 Sum_probs=63.7
Q ss_pred CCeEecccCcccccccEEEecCCCCCCCCCCCcccccchHHHHHHHHHhCCCCCCeEEEecCCChHHHHHhhhcccccEE
Q 008863 453 EPMRIGVPTRTFFEKFVVIKDDPLNGNSNDKNLRYDGFSIELFRLVVDHLNYDLPYEFVPHDGVYDDLINGVYDKVNYFN 532 (550)
Q Consensus 453 ~~~~i~~~~~~~~~pfv~~~~~~~~~~~~~~~~~~~GfciDll~~la~~l~f~~~~~~~~~~g~w~Gmi~el~~~~ad~a 532 (550)
.+++|+.. ..++||.+... . .+.||++||++++++.+|++ +++++. .|+.++..|.+|++|++
T Consensus 3 ~~l~v~~~--~~~~P~~~~~~-g----------~~~G~~~dl~~~~~~~~g~~--~~~~~~--~~~~~~~~l~~g~~D~~ 65 (226)
T 1wdn_A 3 KKLVVATD--TAFVPFEFKQG-D----------LYVGFDVDLWAAIAKELKLD--YELKPM--DFSGIIPALQTKNVDLA 65 (226)
T ss_dssp -CEEEEEE--SSBTTTBEEET-T----------EEESHHHHHHHHHHHHHTCC--EEEEEE--CGGGHHHHHHTTSSSEE
T ss_pred ceEEEEEC--CCCCCeeEecC-C----------cEEEeeHHHHHHHHHHhCCE--EEEEEC--CHHHHHHHHhCCCCCEE
Confidence 45677653 35688987642 2 68999999999999999998 777764 69999999999999999
Q ss_pred eeceeeeeeeeeEEE
Q 008863 533 YHDKLLFKKKKRLCL 547 (550)
Q Consensus 533 ~~~~ti~~~r~~~~~ 547 (550)
+++++++.+|++.+.
T Consensus 66 ~~~~~~~~~r~~~~~ 80 (226)
T 1wdn_A 66 LAGITITDERKKAID 80 (226)
T ss_dssp EEEEECCHHHHTTSE
T ss_pred EEcCcCCHHHhCccc
Confidence 999999999986543
No 82
>2fn9_A Ribose ABC transporter, periplasmic ribose-bindin; RBP, ribose binding protein, periplasmic binding protein, thermophilic proteins; 1.40A {Thermotoga maritima} PDB: 2fn8_A*
Probab=98.14 E-value=0.00015 Score=68.19 Aligned_cols=198 Identities=7% Similarity=0.030 Sum_probs=124.8
Q ss_pred EEEEEEEecC-CccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEcC-CChHHHHH
Q 008863 35 TKIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGM-ETWEETAV 112 (550)
Q Consensus 35 i~IG~i~~~~-~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG~-~~s~~~~~ 112 (550)
.+||+++|.. .........+++.++++. |+.+. +.++..++....+....++. .++.+||.. ........
T Consensus 3 ~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~-----g~~~~--~~~~~~~~~~~~~~~~~l~~-~~vdgiI~~~~~~~~~~~ 74 (290)
T 2fn9_A 3 GKMAIVISTLNNPWFVVLAETAKQRAEQL-----GYEAT--IFDSQNDTAKESAHFDAIIA-AGYDAIIFNPTDADGSIA 74 (290)
T ss_dssp CEEEEEESCSSSHHHHHHHHHHHHHHHHT-----TCEEE--EEECTTCHHHHHHHHHHHHH-TTCSEEEECCSCTTTTHH
T ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHHHc-----CCEEE--EeCCCCCHHHHHHHHHHHHH-cCCCEEEEecCChHHHHH
Confidence 5799999864 334445667777766653 55554 45667787777777777776 588887753 33222223
Q ss_pred HHHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHHc------CCeE--EEEEEEcCC--CCCc
Q 008863 113 VAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKY------NWRR--VAAIYEDNV--YGGD 182 (550)
Q Consensus 113 v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~~------~w~~--v~ii~~~~~--~g~~ 182 (550)
....+...++|+|..... .+.. ...++ .+..++...+..++++|... |.++ ++++..... ..
T Consensus 75 ~~~~~~~~~iPvV~~~~~--~~~~--~~~~~--~V~~D~~~~~~~~~~~L~~~~g~~~~G~r~i~i~~l~g~~~~~~~-- 146 (290)
T 2fn9_A 75 NVKRAKEAGIPVFCVDRG--INAR--GLAVA--QIYSDNYYGGVLAGEYFVKFLKEKYPDAKEIPYAELLGILSAQPT-- 146 (290)
T ss_dssp HHHHHHHTTCCEEEESSC--CSCS--SSSSE--EEEECHHHHHHHHHHHHHHHHHHHCSSCSCEEEEEEECCTTCHHH--
T ss_pred HHHHHHHCCCeEEEEecC--CCCC--CceEE--EEeCCHHHHHHHHHHHHHHHhcccCCcccceeEEEEEcCCCCchH--
Confidence 334455689999988754 2211 11122 26678888888889988776 7888 666765432 22
Q ss_pred chhHHHHHHHHhcC-CCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcC--CCeEEEEEcCCHHHHHHHHHHHHHcCC
Q 008863 183 SGKLALLAEALQNV-SSSEIQSRLVLPPISSISDPKEAVRGELKKVQDK--QSRVFIVLQASLDMTIHLFTEANRMGL 257 (550)
Q Consensus 183 ~~~~~~l~~~l~~~-g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~--~~~~ii~~~~~~~~~~~il~~a~~~g~ 257 (550)
....+.+.+.+++. | +.+.... .... +..+....++++.+. .++.|+. .+...+..+++++++.|+
T Consensus 147 ~~R~~gf~~~l~~~~g-~~~~~~~-~~~~-----~~~~~~~~~~~ll~~~~~~~ai~~--~~d~~a~g~~~al~~~g~ 215 (290)
T 2fn9_A 147 WDRSNGFHSVVDQYPE-FKMVAQQ-SAEF-----DRDTAYKVTEQILQAHPEIKAIWC--GNDAMALGAMKACEAAGR 215 (290)
T ss_dssp HHHHHHHHHHHTTSTT-EEEEEEE-ECTT-----CHHHHHHHHHHHHHHCTTCCEEEE--SSHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhCCC-CEEEEec-cCCC-----CHHHHHHHHHHHHHhCCCCcEEEE--CCchHHHHHHHHHHHCCC
Confidence 45667788899988 8 7764322 1111 223334455555432 5677665 566677889999999998
No 83
>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G*
Probab=98.14 E-value=8.5e-05 Score=69.84 Aligned_cols=202 Identities=15% Similarity=0.114 Sum_probs=127.5
Q ss_pred CCcEEEEEEEecC-CccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEcCCChHHH
Q 008863 32 EEVTKIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEET 110 (550)
Q Consensus 32 ~~~i~IG~i~~~~-~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~~~ 110 (550)
+.+.+||+++|.. .........+++.+.++. |+.+.+ .++..++....+....++. .++.+||-.......
T Consensus 14 ~~s~~Igvi~~~~~~~~~~~~~~gi~~~a~~~-----g~~~~~--~~~~~~~~~~~~~~~~l~~-~~vdgiIi~~~~~~~ 85 (289)
T 2fep_A 14 KKTTTVGVIIPDISSIFYSELARGIEDIATMY-----KYNIIL--SNSDQNMEKELHLLNTMLG-KQVDGIVFMGGNITD 85 (289)
T ss_dssp --CCEEEEEESCTTSHHHHHHHHHHHHHHHHT-----TCEEEE--EECTTCHHHHHHHHHHHHH-TTCSEEEECCSCCCH
T ss_pred CCCCeEEEEeCCCCCchHHHHHHHHHHHHHHc-----CCEEEE--EeCCCCHHHHHHHHHHHHh-CCCCEEEEecCCCCH
Confidence 3578999999864 333345556666665553 666544 4566677666666666765 688877753221122
Q ss_pred HHHHHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHHcCCeEEEEEEEcC-C--CCCcchhHH
Q 008863 111 AVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDN-V--YGGDSGKLA 187 (550)
Q Consensus 111 ~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~~~w~~v~ii~~~~-~--~g~~~~~~~ 187 (550)
..+. .+...++|+|..... .+. .. +..+..++...+..++++|...|.+++++|.... . .. ....+
T Consensus 86 ~~~~-~l~~~~iPvV~~~~~--~~~---~~---~~~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~--~~R~~ 154 (289)
T 2fep_A 86 EHVA-EFKRSPVPIVLAASV--EEQ---EE---TPSVAIDYEQAIYDAVKLLVDKGHTDIAFVSGPMAEPINR--SKKLQ 154 (289)
T ss_dssp HHHH-HHHHSSSCEEEESCC--CTT---CC---SCEEECCHHHHHHHHHHHHHHTTCSSEEEEESCTTSHHHH--TTHHH
T ss_pred HHHH-HHHhcCCCEEEEccc--cCC---CC---CCEEEECcHHHHHHHHHHHHHCCCCeEEEEeCCccccccH--HHHHH
Confidence 2233 344679999998754 221 12 2246788888889999999888999999998754 2 22 45678
Q ss_pred HHHHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcC--CCeEEEEEcCCHHHHHHHHHHHHHcCCCC
Q 008863 188 LLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDK--QSRVFIVLQASLDMTIHLFTEANRMGLVG 259 (550)
Q Consensus 188 ~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~--~~~~ii~~~~~~~~~~~il~~a~~~g~~~ 259 (550)
.+.+.+++.| +.+.....+.... +..+-...++++.+. .++.|+. .+...+..+++++++.|+.-
T Consensus 155 Gf~~al~~~g-~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~ai~~--~~d~~A~g~~~al~~~G~~v 221 (289)
T 2fep_A 155 GYKRALEEAN-LPFNEQFVAEGDY----TYDSGLEALQHLMSLDKKPTAILS--ATDEMALGIIHAAQDQGLSI 221 (289)
T ss_dssp HHHHHHHHTT-CCCCGGGEEECCS----CHHHHHHHHHHHTTSSSCCSEEEE--SSHHHHHHHHHHHHHTTCCT
T ss_pred HHHHHHHHcC-CCCChheEeeCCC----CHHHHHHHHHHHHcCCCCCCEEEE--CCHHHHHHHHHHHHHcCCCC
Confidence 8899999888 7543211111111 223444556666543 5666665 56677888999999999853
No 84
>2q88_A EHUB, putative ABC transporter amino acid-binding prote; substrate-binding protein, compatible solues, ABC-transporte osmoprotection; HET: 4CS; 1.90A {Sinorhizobium meliloti} PDB: 2q89_A*
Probab=98.14 E-value=1.4e-06 Score=80.48 Aligned_cols=79 Identities=13% Similarity=0.087 Sum_probs=63.7
Q ss_pred CCeEecccCcccccccEEEecCCCCCCCCCCCcccccchHHHHHHHHHhCCCCCCeEEEecCCChHHHHHhhhcccccEE
Q 008863 453 EPMRIGVPTRTFFEKFVVIKDDPLNGNSNDKNLRYDGFSIELFRLVVDHLNYDLPYEFVPHDGVYDDLINGVYDKVNYFN 532 (550)
Q Consensus 453 ~~~~i~~~~~~~~~pfv~~~~~~~~~~~~~~~~~~~GfciDll~~la~~l~f~~~~~~~~~~g~w~Gmi~el~~~~ad~a 532 (550)
++++|... .++||.+..++. .+.||++||++++++.+|++ .+++++. .|+.++..|.+|++|++
T Consensus 13 ~~l~v~~~---~~~P~~~~~~~g----------~~~G~~~dl~~~i~~~~g~~-~~~~~~~--~~~~~~~~l~~g~~D~~ 76 (257)
T 2q88_A 13 GFARIAIA---NEPPFTAVGADG----------KVSGAAPDVAREIFKRLGVA-DVVASIS--EYGAMIPGLQAGRHDAI 76 (257)
T ss_dssp TEEEEEEC---CCTTTCEECTTC----------CEESHHHHHHHHHHHHTTCC-EEEEEEC--CGGGHHHHHHTTSCSEE
T ss_pred CeEEEEcC---CCCCeeEECCCC----------CcccccHHHHHHHHHHcCCC-eeeEEeC--CHHHHHHHHHCCCcCEE
Confidence 45677764 578998764332 68999999999999999986 2555554 49999999999999999
Q ss_pred eeceeeeeeeeeEEE
Q 008863 533 YHDKLLFKKKKRLCL 547 (550)
Q Consensus 533 ~~~~ti~~~r~~~~~ 547 (550)
+++++.|.+|++.+.
T Consensus 77 ~~~~~~t~~r~~~~~ 91 (257)
T 2q88_A 77 TAGLFMKPERCAAVA 91 (257)
T ss_dssp CSCCBCCHHHHTTSE
T ss_pred EecccCCHHHHhccc
Confidence 999999999987543
No 85
>3lkv_A Uncharacterized conserved domain protein; ATPase binding cassette, PSI, MCSG, structural genomics, Pro structure initiative; HET: PHE; 2.20A {Vibrio cholerae}
Probab=98.13 E-value=0.00013 Score=68.95 Aligned_cols=189 Identities=11% Similarity=0.186 Sum_probs=122.7
Q ss_pred CCcEEEEEEEecCCccchhHHHHHHHHHHHHhcCC--CCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEcCCChHH
Q 008863 32 EEVTKIGAIVDANSQMGKQAITAMKIAVQNFNSDS--RNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEE 109 (550)
Q Consensus 32 ~~~i~IG~i~~~~~~~g~~~~~a~~~Av~~iN~~~--~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~~ 109 (550)
.+++|||++.-.....-....+||+-+ +++.| .|..+++.+.|.++|+....+.+.++++ +++.+|++. .+..
T Consensus 6 ~~~~~igi~q~~~hp~ld~~~~G~~~~---L~~~G~~~g~nv~~~~~~a~gd~~~~~~~~~~l~~-~~~DlIiai-~t~a 80 (302)
T 3lkv_A 6 AKTAKVAVSQIVEHPALDATRQGLLDG---LKAKGYEEGKNLEFDYKTAQGNPAIAVQIARQFVG-ENPDVLVGI-ATPT 80 (302)
T ss_dssp -CCEEEEEEESCCCHHHHHHHHHHHHH---HHHTTCCBTTTEEEEEEECTTCHHHHHHHHHHHHT-TCCSEEEEE-SHHH
T ss_pred cCCceEEEEEeecChhHHHHHHHHHHH---HHhhCcccCCcEEEEEEeCCCCHHHHHHHHHHHHh-cCCcEEEEc-CCHH
Confidence 368999998655543334556677544 45554 4678999999999999999999999997 689888863 3344
Q ss_pred HHHHHHhhccCCccEEeccCCCCCCccc------CCCCCeEEEEecCcHHhHHHHHHHHHH-c-CCeEEEEEEEcCCCCC
Q 008863 110 TAVVAEIASRVQVPILSFAAPAVTPLSM------SRRWPYLIRMASNDSEQMKCIADLARK-Y-NWRRVAAIYEDNVYGG 181 (550)
Q Consensus 110 ~~~v~~~~~~~~iP~is~~~~~~~~~~~------~~~~~~~~~~~p~~~~~~~al~~~l~~-~-~w~~v~ii~~~~~~g~ 181 (550)
+.+++. ...++|+|..+.+ +|... ....+++..+. +........+++++ + +.+++++||+...-+
T Consensus 81 a~a~~~--~~~~iPVVf~~v~--dp~~~~l~~~~~~~g~nvtGv~--~~~~~~~~l~l~~~l~P~~k~vgvi~~~~~~~- 153 (302)
T 3lkv_A 81 AQALVS--ATKTIPIVFTAVT--DPVGAKLVKQLEQPGKNVTGLS--DLSPVEQHVELIKEILPNVKSIGVVYNPGEAN- 153 (302)
T ss_dssp HHHHHH--HCSSSCEEEEEES--CTTTTTSCSCSSSCCSSEEEEE--CCCCHHHHHHHHHHHSTTCCEEEEEECTTCHH-
T ss_pred HHHHHh--hcCCCCeEEEecC--CcchhhhcccccCCCCcEEEEE--CCcCHHHHHHHHHHhCCCCCEEEEEeCCCccc-
Confidence 444443 3457999877766 55421 11223443332 22223445566655 3 789999999876421
Q ss_pred cchhHHHHHHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcCCCeEEEEEcCCHH
Q 008863 182 DSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLD 243 (550)
Q Consensus 182 ~~~~~~~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~~ii~~~~~~~ 243 (550)
.....+.+++.+++.| +++..... . ...+....++.+.. +.+++++ ..+..
T Consensus 154 s~~~~~~~~~~~~~~g-~~~v~~~~-~-------~~~~~~~~~~~l~~-~~d~i~~-~~d~~ 204 (302)
T 3lkv_A 154 AVSLMELLKLSAAKHG-IKLVEATA-L-------KSADVQSATQAIAE-KSDVIYA-LIDNT 204 (302)
T ss_dssp HHHHHHHHHHHHHHTT-CEEEEEEC-S-------SGGGHHHHHHHHHT-TCSEEEE-CSCHH
T ss_pred HHHHHHHHHHHHHHcC-CEEEEEec-C-------ChHHHHHHHHhccC-CeeEEEE-eCCcc
Confidence 1455677888999999 88765432 2 23566666766654 6788888 66554
No 86
>1tjy_A Sugar transport protein; protein-ligand complex, signaling protein; HET: PAV; 1.30A {Salmonella typhimurium} SCOP: c.93.1.1 PDB: 1tm2_A 3t95_A* 3ejw_A*
Probab=98.11 E-value=0.00035 Score=66.53 Aligned_cols=197 Identities=9% Similarity=-0.005 Sum_probs=124.4
Q ss_pred EEEEEEecC-CccchhHHHHHHHHHHHHhcCCCCcEEEEEEe-cCCCCHHHHHHHHHHhhhcCCeEEEE-cCCChHHHHH
Q 008863 36 KIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIR-DHNRDPFQAATAAQELINKEKVKVIA-GMETWEETAV 112 (550)
Q Consensus 36 ~IG~i~~~~-~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~-d~~~~~~~a~~~~~~li~~~~v~aii-G~~~s~~~~~ 112 (550)
+||+++|.. ..+......+++.++++. |+++ .+. ++..++....+....++. .++.+|| .|..+.....
T Consensus 5 ~Igvi~~~~~~~~~~~~~~g~~~~~~~~-----g~~~--~~~~~~~~d~~~q~~~i~~li~-~~vdgiii~~~~~~~~~~ 76 (316)
T 1tjy_A 5 RIAFIPKLVGVGFFTSGGNGAQEAGKAL-----GIDV--TYDGPTEPSVSGQVQLVNNFVN-QGYDAIIVSAVSPDGLCP 76 (316)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHHHHHH-----TCEE--EECCCSSCCHHHHHHHHHHHHH-TTCSEEEECCSSSSTTHH
T ss_pred EEEEEeCCCCChHHHHHHHHHHHHHHHh-----CCEE--EEECCCCCCHHHHHHHHHHHHH-cCCCEEEEeCCCHHHHHH
Confidence 799999865 334445667777777765 4444 444 467788777788888887 5888755 5555544344
Q ss_pred HHHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHH---cCCeEEEEEEEcCC--CCCcchhHH
Q 008863 113 VAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARK---YNWRRVAAIYEDNV--YGGDSGKLA 187 (550)
Q Consensus 113 v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~---~~w~~v~ii~~~~~--~g~~~~~~~ 187 (550)
+...+...+||+|.+... .+.. . ...+....+....+...+++|.. .|.+++++|..... .. ....+
T Consensus 77 ~~~~a~~~gipvV~~d~~--~~~~--~--~~~~v~~~D~~~~g~~~~~~L~~~~~~g~~~i~~i~g~~~~~~~--~~r~~ 148 (316)
T 1tjy_A 77 ALKRAMQRGVKILTWDSD--TKPE--C--RSYYINQGTPKQLGSMLVEMAAHQVDKEKAKVAFFYSSPTVTDQ--NQWVK 148 (316)
T ss_dssp HHHHHHHTTCEEEEESSC--CCGG--G--CSEEEESCCHHHHHHHHHHHHHHHHCSSSEEEEEEESCSSCHHH--HHHHH
T ss_pred HHHHHHHCcCEEEEecCC--CCCC--C--ceEEEecCCHHHHHHHHHHHHHHHcCCCCCEEEEEEcCCCChhH--HHHHH
Confidence 455667789999998754 2211 1 12222256777788888888866 57899999985432 22 44566
Q ss_pred HHHHHHhcC--CCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcC--CCeEEEEEcCCHHHHHHHHHHHHHcCCC
Q 008863 188 LLAEALQNV--SSSEIQSRLVLPPISSISDPKEAVRGELKKVQDK--QSRVFIVLQASLDMTIHLFTEANRMGLV 258 (550)
Q Consensus 188 ~l~~~l~~~--g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~--~~~~ii~~~~~~~~~~~il~~a~~~g~~ 258 (550)
.+.+.+++. + +++..... ... ...+....++++.+. +++.|+. .+...+..+++++++.| .
T Consensus 149 g~~~~l~~~~~~-~~~~~~~~-~~~-----~~~~~~~~~~~ll~~~~~~~aI~~--~nD~~A~g~~~al~~~G-~ 213 (316)
T 1tjy_A 149 EAKAKISQEHPG-WEIVTTQF-GYN-----DATKSLQTAEGIIKAYPDLDAIIA--PDANALPAAAQAAENLK-R 213 (316)
T ss_dssp HHHHHHHHHCTT-EEEEEEEE-CTT-----CHHHHHHHHHHHHHHCSSCCEEEE--CSTTHHHHHHHHHHHTT-C
T ss_pred HHHHHHHhhCCC-cEEEEecc-CCC-----CHHHHHHHHHHHHHhCCCCCEEEE--CCCccHHHHHHHHHHcC-C
Confidence 777777654 5 66554321 111 223444555555443 4566554 55667788999999999 5
No 87
>3c3k_A Alanine racemase; structural genomics, protein structure initiative, NEW YORK research center for structural genomics, nysgxrc; 1.99A {Actinobacillus succinogenes}
Probab=98.11 E-value=0.00019 Score=67.21 Aligned_cols=199 Identities=13% Similarity=0.134 Sum_probs=124.6
Q ss_pred CcEEEEEEEecC-CccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEcCCChHHHH
Q 008863 33 EVTKIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEETA 111 (550)
Q Consensus 33 ~~i~IG~i~~~~-~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~~~~ 111 (550)
++.+||+++|.. ..+......+++.+.++. |+.+.+ .+...++....+....++. .++.+||.........
T Consensus 7 ~~~~Igvi~~~~~~~~~~~~~~gi~~~~~~~-----g~~~~~--~~~~~~~~~~~~~~~~l~~-~~vdgiI~~~~~~~~~ 78 (285)
T 3c3k_A 7 KTGMLLVMVSNIANPFCAAVVKGIEKTAEKN-----GYRILL--CNTESDLARSRSCLTLLSG-KMVDGVITMDALSELP 78 (285)
T ss_dssp CCCEEEEEESCTTSHHHHHHHHHHHHHHHHT-----TCEEEE--EECTTCHHHHHHHTHHHHT-TCCSEEEECCCGGGHH
T ss_pred CCCEEEEEeCCCCCchHHHHHHHHHHHHHHc-----CCEEEE--EeCCCCHHHHHHHHHHHHh-CCCCEEEEeCCCCChH
Confidence 567899999854 333345556666665553 666654 4555676655566666665 6888887643322223
Q ss_pred HHHHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHHcCCeEEEEEEEcCCCCCcchhHHHHHH
Q 008863 112 VVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLAE 191 (550)
Q Consensus 112 ~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~~~w~~v~ii~~~~~~g~~~~~~~~l~~ 191 (550)
.+.. +. .++|+|..... .+. .. +..+..++...+..++++|...|.+++++|.............+.+.+
T Consensus 79 ~~~~-l~-~~iPvV~~~~~--~~~---~~---~~~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~gf~~ 148 (285)
T 3c3k_A 79 ELQN-II-GAFPWVQCAEY--DPL---ST---VSSVSIDDVAASEYVVDQLVKSGKKRIALINHDLAYQYAQHRESGYLN 148 (285)
T ss_dssp HHHH-HH-TTSSEEEESSC--CTT---SS---SCEEECCHHHHHHHHHHHHHHTTCCCEEEEECCTTSHHHHHHHHHHHH
T ss_pred HHHH-Hh-cCCCEEEEccc--cCC---CC---CCEEEEChHHHHHHHHHHHHHcCCCeEEEEeCCCccccHHHHHHHHHH
Confidence 3333 34 89999998754 221 11 234667888888889999988899999999876432101445677888
Q ss_pred HHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHH--hhcC--CCeEEEEEcCCHHHHHHHHHHHHHcCCCC
Q 008863 192 ALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKK--VQDK--QSRVFIVLQASLDMTIHLFTEANRMGLVG 259 (550)
Q Consensus 192 ~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~--i~~~--~~~~ii~~~~~~~~~~~il~~a~~~g~~~ 259 (550)
.+++.| +.+. ...-.. +..+....+++ +.+. .++.|+. .+...+..+++++++.|+.-
T Consensus 149 ~l~~~g-~~~~-~~~~~~------~~~~~~~~~~~~~~l~~~~~~~ai~~--~~d~~A~g~~~al~~~g~~v 210 (285)
T 3c3k_A 149 RLKFHG-LDYS-RISYAE------NLDYMAGKLATFSLLKSAVKPDAIFA--ISDVLAAGAIQALTESGLSI 210 (285)
T ss_dssp HHHHHT-CCCC-EEEECS------SSSHHHHHHHHHHHHSSSSCCSEEEE--SSHHHHHHHHHHHHHTTCCT
T ss_pred HHHHcC-CCce-EeecCC------ChHHHHHHHHHHHHHcCCCCCeEEEE--CCHHHHHHHHHHHHHcCCCC
Confidence 888888 7654 111111 11233445555 5443 5677665 56677888999999999863
No 88
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=98.11 E-value=6.3e-05 Score=72.55 Aligned_cols=205 Identities=10% Similarity=0.075 Sum_probs=132.1
Q ss_pred CcEEEEEEEec--C-CccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEcCCChHH
Q 008863 33 EVTKIGAIVDA--N-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEE 109 (550)
Q Consensus 33 ~~i~IG~i~~~--~-~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~~ 109 (550)
.+-+||+++|. . ..+-.....+++.+.++. |+.+. +.++..++....+....++. .++.+||-......
T Consensus 60 ~~~~Igvi~~~~~~~~~~~~~~~~gi~~~a~~~-----g~~~~--~~~~~~~~~~~~~~~~~l~~-~~vdgiIi~~~~~~ 131 (338)
T 3dbi_A 60 STQTLGLVVTNTLYHGIYFSELLFHAARMAEEK-----GRQLL--LADGKHSAEEERQAIQYLLD-LRCDAIMIYPRFLS 131 (338)
T ss_dssp CCSEEEEEECTTTTSTTHHHHHHHHHHHHHHHT-----TCEEE--EEECTTSHHHHHHHHHHHHH-TTCSEEEECCSSSC
T ss_pred CCCEEEEEecCCcccChhHHHHHHHHHHHHHHC-----CCEEE--EEeCCCChHHHHHHHHHHHh-CCCCEEEEeCCCCC
Confidence 56789999997 2 333345556666655553 56554 45566777666666666665 58888775333223
Q ss_pred HHHHHHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHHcCCeEEEEEEEcCCCCCcchhHHHH
Q 008863 110 TAVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALL 189 (550)
Q Consensus 110 ~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~~~w~~v~ii~~~~~~g~~~~~~~~l 189 (550)
...+...+...++|+|..... .+. ...+ .+..++...+...+++|...|.+++++|.............+.|
T Consensus 132 ~~~~~~~~~~~~iPvV~~~~~--~~~---~~~~---~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf 203 (338)
T 3dbi_A 132 VDEIDDIIDAHSQPIMVLNRR--LRK---NSSH---SVWCDHKQTSFNAVAELINAGHQEIAFLTGSMDSPTSIERLAGY 203 (338)
T ss_dssp HHHHHHHHHHCSSCEEEESSC--CSS---SGGG---EECBCHHHHHHHHHHHHHHTTCCSEEEECCCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHcCCCCEEEEcCC--CCC---CCCC---EEEEChHHHHHHHHHHHHHCCCCEEEEEeCCCCCccHHHHHHHH
Confidence 345667778889999987765 222 1112 36778888888899999889999999998753321114556778
Q ss_pred HHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcC--CCeEEEEEcCCHHHHHHHHHHHHHcCCCCC
Q 008863 190 AEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDK--QSRVFIVLQASLDMTIHLFTEANRMGLVGK 260 (550)
Q Consensus 190 ~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~--~~~~ii~~~~~~~~~~~il~~a~~~g~~~~ 260 (550)
.+.+++.| +.+.....+.... ...+-...++++.+. .++.|+. .+...+..+++++++.|+.-+
T Consensus 204 ~~al~~~g-~~~~~~~~~~~~~----~~~~~~~~~~~ll~~~~~~~ai~~--~nd~~A~g~~~al~~~G~~vP 269 (338)
T 3dbi_A 204 KDALAQHG-IALNEKLIANGKW----TPASGAEGVEMLLERGAKFSALVA--SNDDMAIGAMKALHERGVAVP 269 (338)
T ss_dssp HHHHHHTT-CCCCGGGEECCCS----SHHHHHHHHHHHHHTTCCCSEEEE--SSHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHHHCC-CCCCcceEEeCCC----CHHHHHHHHHHHHcCCCCCeEEEE--CChHHHHHHHHHHHHcCCCCC
Confidence 89999988 6553222222211 233444455555433 5666665 667778889999999998643
No 89
>3h7m_A Sensor protein; histidine kinase sensor domain, kinase, phosphoprotein, transferase; 2.40A {Geobacter sulfurreducens} SCOP: c.94.1.0
Probab=98.10 E-value=2.5e-06 Score=77.35 Aligned_cols=79 Identities=13% Similarity=0.232 Sum_probs=64.5
Q ss_pred CCCeEecccCcccccccEEEecCCCCCCCCCCCcccccchHHHHHHHHHhCCCCCCeEEEecCCChHHHHHhhhcccccE
Q 008863 452 QEPMRIGVPTRTFFEKFVVIKDDPLNGNSNDKNLRYDGFSIELFRLVVDHLNYDLPYEFVPHDGVYDDLINGVYDKVNYF 531 (550)
Q Consensus 452 ~~~~~i~~~~~~~~~pfv~~~~~~~~~~~~~~~~~~~GfciDll~~la~~l~f~~~~~~~~~~g~w~Gmi~el~~~~ad~ 531 (550)
.++++|+. ...++||.+..++. .+.||++||++++++.+|++ +++++. .|..++..|.+|++|+
T Consensus 10 ~~~l~v~~--~~~~~P~~~~~~~g----------~~~G~~~dl~~~i~~~~g~~--~~~~~~--~~~~~~~~l~~g~~D~ 73 (234)
T 3h7m_A 10 HRTIVVGG--DRDYPPYEFIDQNG----------KPAGYNVELTRAIAEVMGMT--VEFRLG--AWSEMFSALKSGRVDV 73 (234)
T ss_dssp SSCEEEEE--ETEETTTEEECTTS----------CEESHHHHHHHHHHHHHTCC--EEEEEE--CGGGHHHHHHTTSSSE
T ss_pred CCEEEEEe--cCCCCCeEEECCCC----------CEeeeEHHHHHHHHHHcCCc--eEEEeC--CHHHHHHHHhCCCeeE
Confidence 45667776 23578999874432 68999999999999999999 777654 6999999999999999
Q ss_pred EeeceeeeeeeeeEEE
Q 008863 532 NYHDKLLFKKKKRLCL 547 (550)
Q Consensus 532 a~~~~ti~~~r~~~~~ 547 (550)
+++++.+.+|++.+.
T Consensus 74 -~~~~~~~~~r~~~~~ 88 (234)
T 3h7m_A 74 -LQGISWSEKRARQID 88 (234)
T ss_dssp -EEEEECCHHHHTTEE
T ss_pred -EEeccCCHhHHhhcC
Confidence 588999999987554
No 90
>1jx6_A LUXP protein; protein-ligand complex, signaling protein; HET: AI2; 1.50A {Vibrio harveyi} SCOP: c.93.1.1 PDB: 1zhh_A* 2hj9_A*
Probab=98.10 E-value=0.00015 Score=70.04 Aligned_cols=209 Identities=11% Similarity=0.059 Sum_probs=127.5
Q ss_pred CCCcEEEEEEEec--CCccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCC--CCHHHHHHHHHHhhhcCCeEEEEcCCC
Q 008863 31 IEEVTKIGAIVDA--NSQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHN--RDPFQAATAAQELINKEKVKVIAGMET 106 (550)
Q Consensus 31 ~~~~i~IG~i~~~--~~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~--~~~~~a~~~~~~li~~~~v~aiiG~~~ 106 (550)
...+.+||+++|. +...-.....+++.+.++. |+.+.+...++. .++....+....++. .++.+||-+..
T Consensus 40 ~~~~~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~-----g~~~~~~~~~~~~~~~~~~~~~~i~~l~~-~~vdgiIi~~~ 113 (342)
T 1jx6_A 40 TQRPIKISVVYPGQQVSDYWVRNIASFEKRLYKL-----NINYQLNQVFTRPNADIKQQSLSLMEALK-SKSDYLIFTLD 113 (342)
T ss_dssp CSSCEEEEEEECCCSSCCHHHHHHHHHHHHHHHT-----TCCEEEEEEECCTTCCHHHHHHHHHHHHH-TTCSEEEECCS
T ss_pred cCCceEEEEEecCCcccHHHHHHHHHHHHHHHHc-----CCeEEEEecCCCCccCHHHHHHHHHHHHh-cCCCEEEEeCC
Confidence 4467899999986 3333345556666666553 677777655555 577666666677776 58888776544
Q ss_pred hHHHHHHHHhhccCCccEEec-cCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHH-cC-CeEEEEEEEcCC-CCCc
Q 008863 107 WEETAVVAEIASRVQVPILSF-AAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARK-YN-WRRVAAIYEDNV-YGGD 182 (550)
Q Consensus 107 s~~~~~v~~~~~~~~iP~is~-~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~-~~-w~~v~ii~~~~~-~g~~ 182 (550)
..........+...++|+|.. ... .+.......+.+..+..+....+..++++|.. .| .+++++|..... ..
T Consensus 114 ~~~~~~~~~~~~~~~ip~V~~~~~~--~~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~~Gg~~~I~~i~~~~~~~~-- 189 (342)
T 1jx6_A 114 TTRHRKFVEHVLDSTNTKLILQNIT--TPVREWDKHQPFLYVGFDHAEGSRELATEFGKFFPKHTYYSVLYFSEGYIS-- 189 (342)
T ss_dssp SSTTHHHHHHHHHHCSCEEEEETCC--SCBGGGTTSCCSEEEECCHHHHHHHHHHHHHHHSCTTCEEEEECCSTTHHH--
T ss_pred hHhHHHHHHHHHHcCCCEEEEecCC--CcccccccCCCceEEecCcHHHHHHHHHHHHHHcCCCceEEEEEcCCcchh--
Confidence 332222333445568998876 332 12111001122345778888888989999876 47 999999986543 22
Q ss_pred chhHHHHHHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcC--CCeEEEEEcCCHHHHHHHHHHHHHcCC
Q 008863 183 SGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDK--QSRVFIVLQASLDMTIHLFTEANRMGL 257 (550)
Q Consensus 183 ~~~~~~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~--~~~~ii~~~~~~~~~~~il~~a~~~g~ 257 (550)
....+.+.+.+++.| . +.....+.... ...+-...++++.+. .++.|+. .+...+..+++++++.|+
T Consensus 190 ~~R~~Gf~~~l~~~~-~-~~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~ai~~--~nd~~A~g~~~al~~~g~ 258 (342)
T 1jx6_A 190 DVRGDTFIHQVNRDN-N-FELQSAYYTKA----TKQSGYDAAKASLAKHPDVDFIYA--CSTDVALGAVDALAELGR 258 (342)
T ss_dssp HHHHHHHHHHHHHHH-C-CEEEEEECCCS----SHHHHHHHHHHHHHHCCCCSEEEE--SSHHHHHHHHHHHHHHTC
T ss_pred hHHHHHHHHHHHhCC-C-cEEEEEecCCC----CHHHHHHHHHHHHHhCCCccEEEE--CCChhHHHHHHHHHHcCC
Confidence 455677888888877 5 22211122111 223334445554432 4666665 566778889999999998
No 91
>2pyy_A Ionotropic glutamate receptor bacterial homologue; GLUR0 ligand binding domain, transport protein; HET: GLU; 2.10A {Nostoc punctiforme}
Probab=98.09 E-value=1.5e-06 Score=78.50 Aligned_cols=77 Identities=16% Similarity=0.345 Sum_probs=61.5
Q ss_pred CCeEecccCcccccccEEEecCCCCCCCCCCCcccccchHHHHHHHHHhCCCCCCeEEEecCCChHHHHHhhhcccccEE
Q 008863 453 EPMRIGVPTRTFFEKFVVIKDDPLNGNSNDKNLRYDGFSIELFRLVVDHLNYDLPYEFVPHDGVYDDLINGVYDKVNYFN 532 (550)
Q Consensus 453 ~~~~i~~~~~~~~~pfv~~~~~~~~~~~~~~~~~~~GfciDll~~la~~l~f~~~~~~~~~~g~w~Gmi~el~~~~ad~a 532 (550)
++++|... +++||.+. ++. ++.||++||++++++.+|++ ++++.. ..|..++..|.+|++|++
T Consensus 3 ~~l~v~~~---~~~P~~~~-~~g----------~~~G~~~dl~~~~~~~~g~~--~~~~~~-~~~~~~~~~l~~g~~D~~ 65 (228)
T 2pyy_A 3 QPLLVATR---VIPPFVLS-NKG----------ELSGFSIDLWRSIATQIGIE--SKLIEY-SSVPELISAIKDNKVNLG 65 (228)
T ss_dssp -CEEEEEC---CBTTTBBC-C-------------CBSHHHHHHHHHHHHHTCC--EEEEEC-SSHHHHHHHHHTTSCSEE
T ss_pred ceEEEEec---CCCCeEEe-cCC----------ceEEEeHHHHHHHHHHhCCc--EEEEEc-CCHHHHHHHHHCCCcCEE
Confidence 45778765 46888875 322 68999999999999999998 777664 259999999999999999
Q ss_pred eeceeeeeeeeeEE
Q 008863 533 YHDKLLFKKKKRLC 546 (550)
Q Consensus 533 ~~~~ti~~~r~~~~ 546 (550)
+++++.+.+|++.+
T Consensus 66 ~~~~~~~~~r~~~~ 79 (228)
T 2pyy_A 66 IAAISITAEREQNF 79 (228)
T ss_dssp CSSCBCCHHHHHHS
T ss_pred EeccccCHHHHccc
Confidence 99999999987644
No 92
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=98.09 E-value=0.00034 Score=65.71 Aligned_cols=202 Identities=10% Similarity=0.088 Sum_probs=130.4
Q ss_pred CcEEEEEEEecC-CccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEc-CCChHHH
Q 008863 33 EVTKIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAG-METWEET 110 (550)
Q Consensus 33 ~~i~IG~i~~~~-~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG-~~~s~~~ 110 (550)
++.+||+++|.. ...-.....+++.+.++. |+.+. +.++..++....+....++. .++.+||- +......
T Consensus 7 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~-----g~~~~--~~~~~~~~~~~~~~~~~l~~-~~vdgiI~~~~~~~~~ 78 (293)
T 3l6u_A 7 KRNIVGFTIVNDKHEFAQRLINAFKAEAKAN-----KYEAL--VATSQNSRISEREQILEFVH-LKVDAIFITTLDDVYI 78 (293)
T ss_dssp --CEEEEEESCSCSHHHHHHHHHHHHHHHHT-----TCEEE--EEECSSCHHHHHHHHHHHHH-TTCSEEEEECSCTTTT
T ss_pred CCcEEEEEEecCCcHHHHHHHHHHHHHHHHc-----CCEEE--EECCCCCHHHHHHHHHHHHH-cCCCEEEEecCChHHH
Confidence 568999999865 333345556666666554 55554 45666777777777777776 57777664 3333333
Q ss_pred HHHHHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHH-c-CCe-----EEEEEEEcCCCCCcc
Q 008863 111 AVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARK-Y-NWR-----RVAAIYEDNVYGGDS 183 (550)
Q Consensus 111 ~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~-~-~w~-----~v~ii~~~~~~g~~~ 183 (550)
......+...++|+|..... .+.. +.+..+..+....+..++++|.. . |-+ ++++|..........
T Consensus 79 ~~~~~~~~~~~iPvV~~~~~--~~~~-----~~~~~V~~D~~~~g~~~~~~l~~~~~g~~~~~~~~i~~i~g~~~~~~~~ 151 (293)
T 3l6u_A 79 GSAIEEAKKAGIPVFAIDRM--IRSD-----AVVSSITSNNQMIGEQLASYIKNELIKQTGRSTGRIVEITGTANVYTTN 151 (293)
T ss_dssp HHHHHHHHHTTCCEEEESSC--CCCT-----TCSEEEEECHHHHHHHHHHHHHHHHHHHHSCSCEEEEEEECSTTCHHHH
T ss_pred HHHHHHHHHcCCCEEEecCC--CCCC-----cceeEEecCHHHHHHHHHHHHHHHhccCCCCCCceEEEEECCCCCchHH
Confidence 34445566779999998765 2211 12345678888888989998866 5 666 999998654321114
Q ss_pred hhHHHHHHHHhcC-CCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcC--CCeEEEEEcCCHHHHHHHHHHHHHcCCC
Q 008863 184 GKLALLAEALQNV-SSSEIQSRLVLPPISSISDPKEAVRGELKKVQDK--QSRVFIVLQASLDMTIHLFTEANRMGLV 258 (550)
Q Consensus 184 ~~~~~l~~~l~~~-g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~--~~~~ii~~~~~~~~~~~il~~a~~~g~~ 258 (550)
...+.+.+.+++. | +.+.....-.. ...+....++++.+. .+++|+ +.+...+..+++++++.|+.
T Consensus 152 ~R~~gf~~~l~~~~g-~~~~~~~~~~~------~~~~~~~~~~~~l~~~~~~~ai~--~~~d~~a~g~~~al~~~g~~ 220 (293)
T 3l6u_A 152 ERHRGFLKGIENEPT-LSIVDSVSGNY------DPVTSERVMRQVIDSGIPFDAVY--CHNDDIAMGVLEALKKAKIS 220 (293)
T ss_dssp HHHHHHHHHHTTCTT-EEEEEEEECTT------CHHHHHHHHHHHHHTTCCCSEEE--ESSHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHhCCC-cEEeeeccCCC------CHHHHHHHHHHHHHhCCCCCEEE--ECCchHHHHHHHHHHhCCCC
Confidence 5677888999998 8 87765432111 234444555555543 456665 46777788999999999986
No 93
>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix, transcrip; 1.90A {Lactococcus lactis}
Probab=98.08 E-value=0.00015 Score=69.58 Aligned_cols=203 Identities=11% Similarity=0.103 Sum_probs=125.7
Q ss_pred CcEEEEEEEecC-CccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEcCCChHHHH
Q 008863 33 EVTKIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEETA 111 (550)
Q Consensus 33 ~~i~IG~i~~~~-~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~~~~ 111 (550)
.+.+||+++|.. .........+++.+.++. |+.+.+ .++..++....+....++. .++.+||.........
T Consensus 62 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~-----g~~~~~--~~~~~~~~~~~~~~~~l~~-~~vdgiI~~~~~~~~~ 133 (332)
T 2o20_A 62 RTTTVGVILPTITSTYFAAITRGVDDIASMY-----KYNMIL--ANSDNDVEKEEKVLETFLS-KQVDGIVYMGSSLDEK 133 (332)
T ss_dssp CCCEEEEEESCTTCHHHHHHHHHHHHHHHHT-----TCEEEE--EECTTCHHHHHHHHHHHHH-TTCSEEEECSSCCCHH
T ss_pred CCCEEEEEeCCCCCcHHHHHHHHHHHHHHHc-----CCEEEE--EECCCChHHHHHHHHHHHh-CCCCEEEEeCCCCCHH
Confidence 567899999854 333345556666665553 666554 4566677665566666665 6888877532211122
Q ss_pred HHHHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHHcCCeEEEEEEEcCCCCCcchhHHHHHH
Q 008863 112 VVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLAE 191 (550)
Q Consensus 112 ~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~~~w~~v~ii~~~~~~g~~~~~~~~l~~ 191 (550)
.+. .+...++|+|..... .+. ...+ .+..++...+..++++|...|.+++++|..+..........+.|.+
T Consensus 134 ~~~-~l~~~~iPvV~~~~~--~~~---~~~~---~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~~ 204 (332)
T 2o20_A 134 IRT-SLKNSRTPVVLVGTI--DGD---KEIP---SVNIDYHLAAYQSTKKLIDSGNKKIAYIMGSLKDVENTERMVGYQE 204 (332)
T ss_dssp HHH-HHHHHCCCEEEESCC--CTT---SCSC---EEECCHHHHHHHHHHHHHHTTCSSEEEECSCTTSHHHHHHHHHHHH
T ss_pred HHH-HHHhCCCCEEEEccc--cCC---CCCC---EEEeChHHHHHHHHHHHHHCCCCeEEEEeCCcccccHHHHHHHHHH
Confidence 233 334579999987754 221 1222 4667888888889999988899999999875431101455677888
Q ss_pred HHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcCCCeEEEEEcCCHHHHHHHHHHHHHcCCCC
Q 008863 192 ALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGLVG 259 (550)
Q Consensus 192 ~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~~ii~~~~~~~~~~~il~~a~~~g~~~ 259 (550)
.+++.| +.+.....+.... +..+-...++++.+..++.|+. .+...+..+++++++.|+.-
T Consensus 205 al~~~g-~~~~~~~~~~~~~----~~~~~~~~~~~ll~~~~~ai~~--~~d~~A~g~~~al~~~G~~v 265 (332)
T 2o20_A 205 ALLEAN-IEFDENLVFEGNY----SYEQGKALAERLLERGATSAVV--SHDTVAVGLLSAMMDKGVKV 265 (332)
T ss_dssp HHHHTT-CCCCGGGEECSCC----SHHHHHHHHHHHHHTTCCEEEE--SCHHHHHHHHHHHHHTTCCT
T ss_pred HHHHcC-CCCChhhEEeCCC----CHHHHHHHHHHHhccCCCEEEE--CChHHHHHHHHHHHHcCCCC
Confidence 899888 7553221122111 2233334444444337777775 56677888999999999863
No 94
>2iks_A DNA-binding transcriptional dual regulator; escherichia coli structural genomics, PSI-2, protein structure initiative; 1.85A {Escherichia coli}
Probab=98.08 E-value=0.00019 Score=67.45 Aligned_cols=202 Identities=10% Similarity=0.058 Sum_probs=126.9
Q ss_pred CcEEEEEEEecC-CccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEcCCChHHHH
Q 008863 33 EVTKIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEETA 111 (550)
Q Consensus 33 ~~i~IG~i~~~~-~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~~~~ 111 (550)
.+.+||+++|.. .........+++.+.++. |+.+.+ .++..++....+....++. .++.+||-........
T Consensus 19 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~-----g~~~~~--~~~~~~~~~~~~~~~~l~~-~~vdgii~~~~~~~~~ 90 (293)
T 2iks_A 19 RTRSIGLVIPDLENTSYTRIANYLERQARQR-----GYQLLI--ACSEDQPDNEMRCIEHLLQ-RQVDAIIVSTSLPPEH 90 (293)
T ss_dssp CCCEEEEEESCSCSHHHHHHHHHHHHHHHHT-----TCEEEE--EECTTCHHHHHHHHHHHHH-TTCSEEEECCSSCTTC
T ss_pred CCcEEEEEeCCCcCcHHHHHHHHHHHHHHHC-----CCEEEE--EcCCCCHHHHHHHHHHHHH-cCCCEEEEeCCCCCcH
Confidence 567899999853 333344556666555543 566554 4566677666666666765 5888877532221112
Q ss_pred HHHHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHHcCCeEEEEEEEcCCCCCcchhHHHHHH
Q 008863 112 VVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLAE 191 (550)
Q Consensus 112 ~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~~~w~~v~ii~~~~~~g~~~~~~~~l~~ 191 (550)
.+...+...++|+|..... .+. +.+..+..++...+..++++|...|.+++++|.............+.+.+
T Consensus 91 ~~~~~~~~~~iPvV~~~~~--~~~------~~~~~V~~d~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~~ 162 (293)
T 2iks_A 91 PFYQRWANDPFPIVALDRA--LDR------EHFTSVVGADQDDAEMLAEELRKFPAETVLYLGALPELSVSFLREQGFRT 162 (293)
T ss_dssp HHHHTTTTSSSCEEEEESC--CCT------TTCEEEEECHHHHHHHHHHHHHTSCCSSEEEEEECTTSHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCEEEECCc--cCc------CCCCEEEecCHHHHHHHHHHHHHCCCCEEEEEecCcccccHHHHHHHHHH
Confidence 2334556689999988754 221 11334667888888889999988899999999876432111456677888
Q ss_pred HHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcC--CCeEEEEEcCCHHHHHHHHHHHHHcCCCC
Q 008863 192 ALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDK--QSRVFIVLQASLDMTIHLFTEANRMGLVG 259 (550)
Q Consensus 192 ~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~--~~~~ii~~~~~~~~~~~il~~a~~~g~~~ 259 (550)
.+++.| +...... .... ...+-...++++.+. .++.|+. .+...+..+++++++.|+.-
T Consensus 163 ~l~~~g-~~~~~~~--~~~~----~~~~~~~~~~~~l~~~~~~~ai~~--~~d~~a~g~~~al~~~g~~v 223 (293)
T 2iks_A 163 AWKDDP-REVHFLY--ANSY----EREAAAQLFEKWLETHPMPQALFT--TSFALLQGVMDVTLRRDGKL 223 (293)
T ss_dssp HHTTCC-CCEEEEE--ESSS----CHHHHHHHHHHHTTTSCCCSEEEE--SSHHHHHHHHHHHHHHHSSC
T ss_pred HHHHcC-CCccEEE--cCCC----ChhhHHHHHHHHHhcCCCCCEEEE--CChHHHHHHHHHHHHcCCCC
Confidence 999988 6433221 1111 223344556666544 4666665 56677888999999999863
No 95
>2ioy_A Periplasmic sugar-binding protein; ribose binding protein, thermophilic proteins; HET: RIP; 1.90A {Thermoanaerobacter tengcongensis}
Probab=98.07 E-value=0.00063 Score=63.55 Aligned_cols=199 Identities=11% Similarity=0.120 Sum_probs=123.3
Q ss_pred EEEEEEEecC-CccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEc-CCChHHHHH
Q 008863 35 TKIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAG-METWEETAV 112 (550)
Q Consensus 35 i~IG~i~~~~-~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG-~~~s~~~~~ 112 (550)
.+||+++|.. ..+......+++.+.++. |+.+. +.++..++....+....+++ .++.+||- |........
T Consensus 2 ~~Igvi~~~~~~~f~~~~~~gi~~~~~~~-----g~~~~--~~~~~~~~~~~~~~i~~l~~-~~vdgiIi~~~~~~~~~~ 73 (283)
T 2ioy_A 2 KTIGLVISTLNNPFFVTLKNGAEEKAKEL-----GYKII--VEDSQNDSSKELSNVEDLIQ-QKVDVLLINPVDSDAVVT 73 (283)
T ss_dssp CEEEEEESCSSSHHHHHHHHHHHHHHHHH-----TCEEE--EEECTTCHHHHHHHHHHHHH-TTCSEEEECCSSTTTTHH
T ss_pred eEEEEEecCCCCHHHHHHHHHHHHHHHhc-----CcEEE--EecCCCCHHHHHHHHHHHHH-cCCCEEEEeCCchhhhHH
Confidence 3799999864 333445666777666664 55543 45666777766667777775 58887664 433332222
Q ss_pred HHHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHHc-C-CeEEEEEEEcCCCCCcchhHHHHH
Q 008863 113 VAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKY-N-WRRVAAIYEDNVYGGDSGKLALLA 190 (550)
Q Consensus 113 v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~~-~-w~~v~ii~~~~~~g~~~~~~~~l~ 190 (550)
....+...++|+|..... .+. . +....+..++...+..++++|... | -+++++|.............+.++
T Consensus 74 ~~~~~~~~~iPvV~~~~~--~~~---~--~~~~~V~~D~~~~g~~a~~~L~~~~gg~~~I~~i~g~~~~~~~~~R~~Gf~ 146 (283)
T 2ioy_A 74 AIKEANSKNIPVITIDRS--ANG---G--DVVCHIASDNVKGGEMAAEFIAKALKGKGNVVELEGIPGASAARDRGKGFD 146 (283)
T ss_dssp HHHHHHHTTCCEEEESSC--CSS---S--CCSEEEEECHHHHHHHHHHHHHHHTTTCEEEEEEECCTTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCeEEEecCC--CCC---c--ceeEEEecChHHHHHHHHHHHHHHcCCCceEEEEECCCCCccHHHHHHHHH
Confidence 334456779999987654 111 1 112245677777888888988665 5 899999986543210134567788
Q ss_pred HHHhcC-CCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcC--CCeEEEEEcCCHHHHHHHHHHHHHcCC
Q 008863 191 EALQNV-SSSEIQSRLVLPPISSISDPKEAVRGELKKVQDK--QSRVFIVLQASLDMTIHLFTEANRMGL 257 (550)
Q Consensus 191 ~~l~~~-g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~--~~~~ii~~~~~~~~~~~il~~a~~~g~ 257 (550)
+.+++. | +.+..... ... ...+-...++++.+. .++.|+ +.+...+..+++++++.|+
T Consensus 147 ~al~~~~~-~~~~~~~~-~~~-----~~~~~~~~~~~ll~~~~~~~ai~--~~nD~~A~g~~~al~~~G~ 207 (283)
T 2ioy_A 147 EAIAKYPD-IKIVAKQA-ADF-----DRSKGLSVMENILQAQPKIDAVF--AQNDEMALGAIKAIEAANR 207 (283)
T ss_dssp HHHTTCTT-EEEEEEEE-CTT-----CHHHHHHHHHHHHHHCSCCCEEE--ESSHHHHHHHHHHHHHTTC
T ss_pred HHHHhCCC-CEEEeecc-CCC-----CHHHHHHHHHHHHHhCCCccEEE--ECCchHHHHHHHHHHHCCC
Confidence 889887 8 77643221 111 223334445555432 456655 4677788899999999998
No 96
>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structur genomics, protein structure initiative; 2.20A {Bacteroides fragilis}
Probab=98.06 E-value=0.00019 Score=67.85 Aligned_cols=213 Identities=10% Similarity=0.004 Sum_probs=130.6
Q ss_pred CCcEEEEEEEecC--CccchhHHHHHHHHHHHHhcCCCCcEEEEEEe-cCCCCHHHHHHHHHHhhhcCCeEEEEc-CCCh
Q 008863 32 EEVTKIGAIVDAN--SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIR-DHNRDPFQAATAAQELINKEKVKVIAG-METW 107 (550)
Q Consensus 32 ~~~i~IG~i~~~~--~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~-d~~~~~~~a~~~~~~li~~~~v~aiiG-~~~s 107 (550)
+++.+||+++|.. ...-.....+++.+.++. +|+.+.+... +...++..-.+....++. .++.+||- +...
T Consensus 6 ~~~~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~----~g~~~~~~~~~~~~~~~~~~~~~i~~l~~-~~vdgiii~~~~~ 80 (304)
T 3gbv_A 6 NKKYTFACLLPKHLEGEYWTDVQKGIREAVTTY----SDFNISANITHYDPYDYNSFVATSQAVIE-EQPDGVMFAPTVP 80 (304)
T ss_dssp -CCEEEEEEEECCCTTSHHHHHHHHHHHHHHHT----GGGCEEEEEEEECSSCHHHHHHHHHHHHT-TCCSEEEECCSSG
T ss_pred CCcceEEEEecCCCCchHHHHHHHHHHHHHHHH----HhCCeEEEEEcCCCCCHHHHHHHHHHHHh-cCCCEEEECCCCh
Confidence 3678999999974 334445666776666664 2566776655 455677666666667766 68887774 4444
Q ss_pred HHHHHHHHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHHcCC--eEEEEEEEcC------CC
Q 008863 108 EETAVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNW--RRVAAIYEDN------VY 179 (550)
Q Consensus 108 ~~~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~~~w--~~v~ii~~~~------~~ 179 (550)
.........+...++|+|..... .+.. +.+-.+.++....+..++++|...+. +++++|.... ..
T Consensus 81 ~~~~~~~~~~~~~~iPvV~~~~~--~~~~-----~~~~~V~~D~~~~g~~a~~~l~~~g~~~~~i~~i~~~~~g~~~~~~ 153 (304)
T 3gbv_A 81 QYTKGFTDALNELGIPYIYIDSQ--IKDA-----PPLAFFGQNSHQSGYFAARMLMLLAVNDREIVIFRKIHEGVIGSNQ 153 (304)
T ss_dssp GGTHHHHHHHHHHTCCEEEESSC--CTTS-----CCSEEEECCHHHHHHHHHHHHHHHSTTCSEEEEEEEEBTTBCCCHH
T ss_pred HHHHHHHHHHHHCCCeEEEEeCC--CCCC-----CceEEEecChHHHHHHHHHHHHHHhCCCCeEEEEEecccCCccchh
Confidence 33344455566679999998765 2211 11335678888889999999988877 9999998431 12
Q ss_pred CCcchhHHHHHHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhc-C-CCeEEEEEcCCHHHHHHHHHHHHHcCC
Q 008863 180 GGDSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQD-K-QSRVFIVLQASLDMTIHLFTEANRMGL 257 (550)
Q Consensus 180 g~~~~~~~~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~-~-~~~~ii~~~~~~~~~~~il~~a~~~g~ 257 (550)
. ....+.+.+.+++.| ..+.......... ........++++.+ . .++.|+. ..+. +..+++++++.|+
T Consensus 154 ~--~~R~~gf~~~l~~~g-~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~ai~~-~~d~--a~g~~~al~~~g~ 223 (304)
T 3gbv_A 154 Q--ESREIGFRQYMQEHH-PACNILELNLHAD----LNIEDSRMLDDFFREHPDVKHGIT-FNSK--VYIIGEYLQQRRK 223 (304)
T ss_dssp H--HHHHHHHHHHHHHHC-TTSEEEEEEEESS----CSSCHHHHHHHHHHHCTTCCEEEE-SSSC--THHHHHHHHHTTC
T ss_pred H--HHHHHHHHHHHHhhC-CCcEEEEeeecCC----CHHHHHHHHHHHHHhCCCeEEEEE-cCcc--hHHHHHHHHHcCC
Confidence 2 455677888888876 4332221111110 11122333343332 2 6778777 5544 7789999999998
Q ss_pred CCCCEEEEEec
Q 008863 258 VGKDSVWIVTN 268 (550)
Q Consensus 258 ~~~~~~~i~~~ 268 (550)
.+...++.+
T Consensus 224 --~di~vig~d 232 (304)
T 3gbv_A 224 --SDFSLIGYD 232 (304)
T ss_dssp --CSCEEEEES
T ss_pred --CCcEEEEeC
Confidence 333344433
No 97
>3bbl_A Regulatory protein of LACI family; protein structure initiative II, PSI-II, NYSGXRC, transcript regulator, periplasmic binding protein; 2.35A {Chloroflexus aggregans}
Probab=98.05 E-value=8.6e-05 Score=69.71 Aligned_cols=203 Identities=14% Similarity=0.070 Sum_probs=123.9
Q ss_pred CcEEEEEEEec-----CCccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEcCCCh
Q 008863 33 EVTKIGAIVDA-----NSQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETW 107 (550)
Q Consensus 33 ~~i~IG~i~~~-----~~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG~~~s 107 (550)
++.+||+++|. +.........+++.+.++. |+.+.+ .++..++....+....+++ .++.+||-....
T Consensus 3 ~s~~Ig~i~~~~~~~~~~~~~~~~~~gi~~~a~~~-----g~~~~~--~~~~~~~~~~~~~~~~l~~-~~vdgiIi~~~~ 74 (287)
T 3bbl_A 3 LSFMIGYSWTQTEPGQVNHILDQFLSSMVREAGAV-----NYFVLP--FPFSEDRSQIDIYRDLIRS-GNVDGFVLSSIN 74 (287)
T ss_dssp CCCEEEECCCCCCTTCSCCTHHHHHHHHHHHHHHT-----TCEEEE--CCCCSSTTCCHHHHHHHHT-TCCSEEEECSCC
T ss_pred ceeEEEEEecccccccCChhHHHHHHHHHHHHHHc-----CCEEEE--EeCCCchHHHHHHHHHHHc-CCCCEEEEeecC
Confidence 35689999986 3344456667777766653 566544 4444444333444555554 688877753221
Q ss_pred HHHHHHHHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHHcCCeEEEEEEEcCCCCCcchhHH
Q 008863 108 EETAVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLA 187 (550)
Q Consensus 108 ~~~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~~~w~~v~ii~~~~~~g~~~~~~~ 187 (550)
.... ....+...++|+|..... .+. .. +..+..++...+..++++|...|.+++++|.............+
T Consensus 75 ~~~~-~~~~l~~~~iPvV~~~~~--~~~---~~---~~~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~ 145 (287)
T 3bbl_A 75 YNDP-RVQFLLKQKFPFVAFGRS--NPD---WD---FAWVDIDGTAGTRQAVEYLIGRGHRRIAILAWPEDSRVGNDRLQ 145 (287)
T ss_dssp TTCH-HHHHHHHTTCCEEEESCC--STT---CC---CCEEEECHHHHHHHHHHHHHHHTCCCEEEEECCTTCHHHHHHHH
T ss_pred CCcH-HHHHHHhcCCCEEEECCc--CCC---CC---CCEEEeccHHHHHHHHHHHHHCCCCeEEEEeCCcccccHHHHHH
Confidence 1112 233445679999998754 221 12 22456788888888999987789999999986543110145567
Q ss_pred HHHHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhc-C---CCeEEEEEcCCHHHHHHHHHHHHHcCCCC
Q 008863 188 LLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQD-K---QSRVFIVLQASLDMTIHLFTEANRMGLVG 259 (550)
Q Consensus 188 ~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~-~---~~~~ii~~~~~~~~~~~il~~a~~~g~~~ 259 (550)
.+.+.+++.| +.+.....+.... +..+-...++++.+ . .++.|+. .+...+..+++++++.|+.-
T Consensus 146 Gf~~~l~~~g-~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~ai~~--~~d~~a~g~~~al~~~G~~v 214 (287)
T 3bbl_A 146 GYLEAMQTAQ-LPIETGYILRGEG----TFEVGRAMTLHLLDLSPERRPTAIMT--LNDTMAIGAMAAARERGLTI 214 (287)
T ss_dssp HHHHHHHHTT-CCCCGGGEEECCS----SHHHHHHHHHHHHTSCTTTSCSEEEE--SSHHHHHHHHHHHHHTTCCB
T ss_pred HHHHHHHHcC-CCCChhhEEeCCC----CHHHHHHHHHHHHhhCCCCCCcEEEE--CCcHHHHHHHHHHHHcCCCC
Confidence 7888898888 7543211111111 22344455666654 3 4666665 56677888999999999863
No 98
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=98.05 E-value=4.9e-05 Score=71.56 Aligned_cols=203 Identities=11% Similarity=0.087 Sum_probs=127.7
Q ss_pred CcEEEEEEEecC-CccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEcCCChHHHH
Q 008863 33 EVTKIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEETA 111 (550)
Q Consensus 33 ~~i~IG~i~~~~-~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~~~~ 111 (550)
++.+||+++|.. ..+-.....+++.+.++. |+.+. +.++..++....+....++. .++.+||-..... ..
T Consensus 7 ~~~~Igvv~~~~~~~~~~~~~~gi~~~a~~~-----g~~~~--~~~~~~~~~~~~~~~~~l~~-~~vdgiIi~~~~~-~~ 77 (291)
T 3egc_A 7 RSNVVGLIVSDIENVFFAEVASGVESEARHK-----GYSVL--LANTAEDIVREREAVGQFFE-RRVDGLILAPSEG-EH 77 (291)
T ss_dssp CCCEEEEEESCTTSHHHHHHHHHHHHHHHHT-----TCEEE--EEECTTCHHHHHHHHHHHHH-TTCSEEEECCCSS-CC
T ss_pred CCcEEEEEECCCcchHHHHHHHHHHHHHHHC-----CCEEE--EEeCCCCHHHHHHHHHHHHH-CCCCEEEEeCCCC-Ch
Confidence 568999999865 223345556666666553 55554 45566677666666666665 6888777433222 23
Q ss_pred HHHHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHHcCCeEEEEEEEcCCCCCcchhHHHHHH
Q 008863 112 VVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLAE 191 (550)
Q Consensus 112 ~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~~~w~~v~ii~~~~~~g~~~~~~~~l~~ 191 (550)
.....+...++|+|..... .+. +.+..+..+....+..++++|...|.++++++.............+.+.+
T Consensus 78 ~~~~~~~~~~iPvV~~~~~--~~~------~~~~~V~~D~~~~g~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~gf~~ 149 (291)
T 3egc_A 78 DYLRTELPKTFPIVAVNRE--LRI------PGCGAVLSENVRGARTAVEYLIARGHTRIGAIVGSAGLMTSRERLKGFRA 149 (291)
T ss_dssp HHHHHSSCTTSCEEEESSC--CCC------TTCEEEEECHHHHHHHHHHHHHHTTCCSEEEECSCTTSHHHHHHHHHHHH
T ss_pred HHHHHhhccCCCEEEEecc--cCC------CCCCEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCCCCcCHHHHHHHHHH
Confidence 3445667789999988765 221 12345678888889999999988899999999876431111456677888
Q ss_pred HHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhc--CCCeEEEEEcCCHHHHHHHHHHHHHcCCCC
Q 008863 192 ALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQD--KQSRVFIVLQASLDMTIHLFTEANRMGLVG 259 (550)
Q Consensus 192 ~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~--~~~~~ii~~~~~~~~~~~il~~a~~~g~~~ 259 (550)
.+++.| +.+.......... ...+....++++.+ ..++.|+. .+...+..+++++++.|+.-
T Consensus 150 ~l~~~g-~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~ai~~--~~d~~a~g~~~al~~~g~~v 212 (291)
T 3egc_A 150 AMSAAG-LPVRQEWIAAGGV----RADNGRDGAIKVLTGADRPTALLT--SSHRITEGAMQALNVLGLRY 212 (291)
T ss_dssp HHHHTT-CCCCGGGEEC----------CCHHHHHHHHTC-CCCSEEEE--SSHHHHHHHHHHHHHHTCCB
T ss_pred HHHHcC-CCCCHHHeEeCCC----ChhHHHHHHHHHHhCCCCCcEEEE--CCcHHHHHHHHHHHHcCCCC
Confidence 898888 6543221111111 11122233444443 25666664 67778888999999999863
No 99
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=98.04 E-value=0.0002 Score=67.32 Aligned_cols=204 Identities=9% Similarity=0.094 Sum_probs=127.7
Q ss_pred CcEEEEEEEec-----C-CccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEcCCC
Q 008863 33 EVTKIGAIVDA-----N-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMET 106 (550)
Q Consensus 33 ~~i~IG~i~~~-----~-~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG~~~ 106 (550)
++-+||+++|. . ...-.....+++.+.++. |+.+. +.+...++....+....+++ .++.+||-...
T Consensus 7 ~~~~Igvi~~~~~~~~~~~~~~~~~~~gi~~~a~~~-----g~~~~--~~~~~~~~~~~~~~~~~~~~-~~vdgiIi~~~ 78 (292)
T 3k4h_A 7 TTKTLGLVMPSSASKAFQNPFFPEVIRGISSFAHVE-----GYALY--MSTGETEEEIFNGVVKMVQG-RQIGGIILLYS 78 (292)
T ss_dssp CCCEEEEECSSCHHHHTTSTHHHHHHHHHHHHHHHT-----TCEEE--ECCCCSHHHHHHHHHHHHHT-TCCCEEEESCC
T ss_pred CCCEEEEEecCCccccccCHHHHHHHHHHHHHHHHc-----CCEEE--EEeCCCCHHHHHHHHHHHHc-CCCCEEEEeCC
Confidence 56889999997 3 333445556666666553 55554 45555555444444444444 68888774322
Q ss_pred hHHHHHHHHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHHcCCeEEEEEEEcCCCCCcchhH
Q 008863 107 WEETAVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKL 186 (550)
Q Consensus 107 s~~~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~~~w~~v~ii~~~~~~g~~~~~~ 186 (550)
.... .....+...++|+|..... .+.. .. +..+..+....+..++++|...|.++++++.............
T Consensus 79 ~~~~-~~~~~l~~~~iPvV~~~~~--~~~~--~~---~~~V~~D~~~~g~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~ 150 (292)
T 3k4h_A 79 REND-RIIQYLHEQNFPFVLIGKP--YDRK--DE---ITYVDNDNYTAAREVAEYLISLGHKQIAFIGGGSDLLVTRDRL 150 (292)
T ss_dssp BTTC-HHHHHHHHTTCCEEEESCC--SSCT--TT---SCEEECCHHHHHHHHHHHHHHTTCCCEEEEESCTTBHHHHHHH
T ss_pred CCCh-HHHHHHHHCCCCEEEECCC--CCCC--CC---CCEEEECcHHHHHHHHHHHHHCCCceEEEEeCcccchhHHHHH
Confidence 2222 3445566779999998765 2211 11 2346788888899999999889999999998764321114556
Q ss_pred HHHHHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcC--CCeEEEEEcCCHHHHHHHHHHHHHcCCCC
Q 008863 187 ALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDK--QSRVFIVLQASLDMTIHLFTEANRMGLVG 259 (550)
Q Consensus 187 ~~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~--~~~~ii~~~~~~~~~~~il~~a~~~g~~~ 259 (550)
+.+.+.+++.| +.+.....+.... ...+....++++.+. .++.|+. .+...+..+++++++.|+.-
T Consensus 151 ~gf~~~l~~~g-~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~ai~~--~~d~~a~g~~~al~~~g~~v 218 (292)
T 3k4h_A 151 AGMSDALKLAD-IVLPKEYILHFDF----SRESGQQAVEELMGLQQPPTAIMA--TDDLIGLGVLSALSKKGFVV 218 (292)
T ss_dssp HHHHHHHHHTT-CCCCGGGEEECCS----SHHHHHHHHHHHHTSSSCCSEEEE--SSHHHHHHHHHHHHHTTCCT
T ss_pred HHHHHHHHHcC-CCCChheEEecCC----CHHHHHHHHHHHHcCCCCCcEEEE--cChHHHHHHHHHHHHhCCCC
Confidence 77888999888 6543222111111 234445566666554 5666665 66778889999999999863
No 100
>3d8u_A PURR transcriptional regulator; APC91343.1, vibrio parahaem RIMD 2210633, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.88A {Vibrio parahaemolyticus}
Probab=98.04 E-value=0.00017 Score=67.11 Aligned_cols=201 Identities=11% Similarity=0.047 Sum_probs=123.9
Q ss_pred cEEEEEEEecC-CccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEc-CCChHHHH
Q 008863 34 VTKIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAG-METWEETA 111 (550)
Q Consensus 34 ~i~IG~i~~~~-~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG-~~~s~~~~ 111 (550)
+-+||+++|.. ...-.....+++.+.++. |+.+.+ .+...++....+....++. .++.+||- +.... .
T Consensus 3 s~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~-----g~~~~~--~~~~~~~~~~~~~~~~l~~-~~vdgii~~~~~~~-~- 72 (275)
T 3d8u_A 3 AYSIALIIPSLFEKACAHFLPSFQQALNKA-----GYQLLL--GYSDYSIEQEEKLLSTFLE-SRPAGVVLFGSEHS-Q- 72 (275)
T ss_dssp -CEEEEEESCSSCHHHHHHHHHHHHHHHHT-----SCEECC--EECTTCHHHHHHHHHHHHT-SCCCCEEEESSCCC-H-
T ss_pred ceEEEEEeCCCccccHHHHHHHHHHHHHHC-----CCEEEE--EcCCCCHHHHHHHHHHHHh-cCCCEEEEeCCCCC-H-
Confidence 46899999854 223334556666655543 565544 4555677666666666665 57776553 22221 1
Q ss_pred HHHHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHHcCCeEEEEEEEcCCCCCcchhHHHHHH
Q 008863 112 VVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLAE 191 (550)
Q Consensus 112 ~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~~~w~~v~ii~~~~~~g~~~~~~~~l~~ 191 (550)
.....+...++|+|..... .+. +.+..+..+....+..++++|...|.+++++|.............+.+.+
T Consensus 73 ~~~~~l~~~~iPvV~~~~~--~~~------~~~~~V~~d~~~~~~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~gf~~ 144 (275)
T 3d8u_A 73 RTHQLLEASNTPVLEIAEL--SSK------ASYLNIGVDHFEVGKACTRHLIEQGFKNVGFIGARGNHSTLQRQLHGWQS 144 (275)
T ss_dssp HHHHHHHHHTCCEEEESSS--CSS------SSSEEECBCHHHHHHHHHHHHHTTTCCCEEEEECSCSSHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCEEEEeec--cCC------CCCCEEEEChHHHHHHHHHHHHHCCCCeEEEEcCCCCCchHHHHHHHHHH
Confidence 2233445579999987654 221 12345778888888889999988899999999876432101455677888
Q ss_pred HHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcC--CCeEEEEEcCCHHHHHHHHHHHHHcCCCC
Q 008863 192 ALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDK--QSRVFIVLQASLDMTIHLFTEANRMGLVG 259 (550)
Q Consensus 192 ~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~--~~~~ii~~~~~~~~~~~il~~a~~~g~~~ 259 (550)
.+++.| +.+.....+.... +..+....++++.+. .++.|+. .+...+..+++++++.|+.-
T Consensus 145 ~l~~~g-~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~ai~~--~~d~~a~g~~~al~~~g~~v 207 (275)
T 3d8u_A 145 AMIENY-LTPDHFLTTHEAP----SSQLGAEGLAKLLLRDSSLNALVC--SHEEIAIGALFECHRRVLKV 207 (275)
T ss_dssp HHHHTT-CCCCCEEECSSCC----CHHHHHHHHHHHHTTCTTCCEEEE--SSHHHHHHHHHHHHHTTCCT
T ss_pred HHHHcC-CCCCccEEEeCCC----ChhHHHHHHHHHHhCCCCCCEEEE--cCcHHHHHHHHHHHHcCCCC
Confidence 898888 6543322221111 233444555655543 4677665 56677888999999999863
No 101
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=98.03 E-value=0.00066 Score=64.44 Aligned_cols=202 Identities=10% Similarity=-0.003 Sum_probs=129.7
Q ss_pred cEEEEEEEecC-CccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEc-CCChHHHH
Q 008863 34 VTKIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAG-METWEETA 111 (550)
Q Consensus 34 ~i~IG~i~~~~-~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG-~~~s~~~~ 111 (550)
..+||+++|.. ...-.....+++.+.++. |+.+. +.++..++....+....++. .++.+||- +.......
T Consensus 2 ~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~-----g~~~~--~~~~~~~~~~~~~~i~~l~~-~~vdgiIi~~~~~~~~~ 73 (313)
T 3m9w_A 2 EVKIGMAIDDLRLERWQKDRDIFVKKAESL-----GAKVF--VQSANGNEETQMSQIENMIN-RGVDVLVIIPYNGQVLS 73 (313)
T ss_dssp -CEEEEEESCCSSSTTHHHHHHHHHHHHHT-----SCEEE--EEECTTCHHHHHHHHHHHHH-TTCSEEEEECSSTTSCH
T ss_pred CcEEEEEeCCCCChHHHHHHHHHHHHHHHc-----CCEEE--EECCCCCHHHHHHHHHHHHH-cCCCEEEEeCCChhhhH
Confidence 45899999864 445556778887777774 55554 45667777777777777776 57877764 43333333
Q ss_pred HHHHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHH-HcCCeEEEEEEEcCCCCCcchhHHHHH
Q 008863 112 VVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLAR-KYNWRRVAAIYEDNVYGGDSGKLALLA 190 (550)
Q Consensus 112 ~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~-~~~w~~v~ii~~~~~~g~~~~~~~~l~ 190 (550)
.....+...++|+|..... .+. ... ...+..+....+..++++|. ..|-+++++|.............+.++
T Consensus 74 ~~~~~~~~~~iPvV~~~~~--~~~---~~~--~~~V~~D~~~~g~~a~~~L~~~~G~~~i~~i~g~~~~~~~~~R~~Gf~ 146 (313)
T 3m9w_A 74 NVVKEAKQEGIKVLAYDRM--IND---ADI--DFYISFDNEKVGELQAKALVDIVPQGNYFLMGGSPVDNNAKLFRAGQM 146 (313)
T ss_dssp HHHHHHHTTTCEEEEESSC--CTT---SCC--SEEEEECHHHHHHHHHHHHHHHCSSEEEEEEESCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCeEEEECCc--CCC---CCc--eEEEecCHHHHHHHHHHHHHHhCCCCcEEEEECCCCCccHHHHHHHHH
Confidence 4455667789999998765 222 111 13456788888999999987 899999999986543211134556777
Q ss_pred HHHhcC----CCeEEEEEeecCCCCCCCCChHHHHHHHHHhhc---CCCeEEEEEcCCHHHHHHHHHHHHHcCCC
Q 008863 191 EALQNV----SSSEIQSRLVLPPISSISDPKEAVRGELKKVQD---KQSRVFIVLQASLDMTIHLFTEANRMGLV 258 (550)
Q Consensus 191 ~~l~~~----g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~---~~~~~ii~~~~~~~~~~~il~~a~~~g~~ 258 (550)
+.+++. + +.+......... ........++++.+ ..++.|+. .+...+..+++++++.|+.
T Consensus 147 ~~l~~~~~~~~-~~~~~~~~~~~~-----~~~~~~~~~~~~l~~~~~~~~ai~~--~~d~~a~g~~~al~~~G~~ 213 (313)
T 3m9w_A 147 KVLKPYVDSGK-IKVVGDQWVDGW-----LPENALKIMENALTANNNKIDAVVA--SNDATAGGAIQALSAQGLS 213 (313)
T ss_dssp HHHHHHHHTTS-EEEEEEEECGGG-----CHHHHHHHHHHHHHHTTTCCCEEEE--SSHHHHHHHHHHHHTTTCT
T ss_pred HHHHhhccCCC-EEEEeeccCCCc-----CHHHHHHHHHHHHHhCCCCeeEEEE--CCCchHHHHHHHHHHcCCC
Confidence 777765 6 666543321111 22333444444443 35666654 5677888999999999986
No 102
>3clk_A Transcription regulator; 11017J, PSI-II, NYSGXRC, dimer, structural genomics, protein structure initiative; 2.08A {Lactobacillus plantarum WCFS1}
Probab=98.02 E-value=8.1e-05 Score=70.01 Aligned_cols=201 Identities=16% Similarity=0.113 Sum_probs=115.5
Q ss_pred CcEEEEEEEecC-CccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEcCCChHHHH
Q 008863 33 EVTKIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEETA 111 (550)
Q Consensus 33 ~~i~IG~i~~~~-~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~~~~ 111 (550)
.+.+||+++|.. .........+++.+.++. |+.+.+. +++..++....+....++. .++.+||........
T Consensus 7 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~-----g~~~~~~-~~~~~~~~~~~~~~~~l~~-~~vdgiI~~~~~~~~- 78 (290)
T 3clk_A 7 SSNVIAAVVSSVRTNFAQQILDGIQEEAHKN-----GYNLIIV-YSGSADPEEQKHALLTAIE-RPVMGILLLSIALTD- 78 (290)
T ss_dssp -CCEEEEECCCCSSSHHHHHHHHHHHHHHTT-----TCEEEEE-C----------CHHHHHHS-SCCSEEEEESCC----
T ss_pred cCCEEEEEeCCCCChHHHHHHHHHHHHHHHc-----CCeEEEE-eCCCCCHHHHHHHHHHHHh-cCCCEEEEecccCCH-
Confidence 467899999854 333344555555555442 5666543 1555555444455556665 578877753222222
Q ss_pred HHHHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHHcCCeEEEEEEEcCC--CCCcchhHHHH
Q 008863 112 VVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNV--YGGDSGKLALL 189 (550)
Q Consensus 112 ~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~~~w~~v~ii~~~~~--~g~~~~~~~~l 189 (550)
.....+...++|+|..... .+. + +..+..++...+..++++|...|.+++++|..... .. ....+.+
T Consensus 79 ~~~~~l~~~~iPvV~~~~~--~~~------~-~~~V~~D~~~~g~~a~~~L~~~G~~~i~~i~~~~~~~~~--~~R~~gf 147 (290)
T 3clk_A 79 DNLQLLQSSDVPYCFLSMG--FDD------D-RPFISSDDEDIGYQATNLLINEGHRQIGIAGIDQYPYTG--RKRLAGY 147 (290)
T ss_dssp -CHHHHHCC--CEEEESCC----C------C-SCEEECCHHHHHHHHHHHHHTTTCCSEEEESCCCCTTTH--HHHHHHH
T ss_pred HHHHHHHhCCCCEEEEcCC--CCC------C-CCEEEeChHHHHHHHHHHHHHcCCCEEEEEeCCCCCcch--HHHHHHH
Confidence 2233455689999997754 221 1 23467888888899999998889999999986532 33 5667888
Q ss_pred HHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhc-CCCeEEEEEcCCHHHHHHHHHHHHHcCCCC
Q 008863 190 AEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQD-KQSRVFIVLQASLDMTIHLFTEANRMGLVG 259 (550)
Q Consensus 190 ~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~-~~~~~ii~~~~~~~~~~~il~~a~~~g~~~ 259 (550)
.+.+++.| +.+.....+.... ...+-...++++.+ ..++.|+. .+...+..+++++++.|+.-
T Consensus 148 ~~~l~~~g-~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~ai~~--~~d~~a~g~~~al~~~g~~v 211 (290)
T 3clk_A 148 KKALKEAN-IAINQEWIKPGDY----SYTSGEQAMKAFGKNTDLTGIIA--ASDMTAIGILNQASSFGIEV 211 (290)
T ss_dssp HHHHHHTT-CCCCGGGEECCCS----SHHHHHHHHHHHCTTCCCSEEEE--SSHHHHHHHHHHHHHTTCCT
T ss_pred HHHHHHcC-CCCCcceEEcCCC----ChhhHHHHHHHHhccCCCcEEEE--CCcHHHHHHHHHHHHcCCCC
Confidence 89999888 7653211121111 22334445555553 45677665 56667888999999999863
No 103
>2pvu_A ARTJ; basic amino acid binding protein, ABC transport system, THER bacterium, transport protein; HET: LYS; 1.79A {Geobacillus stearothermophilus} PDB: 2q2a_A* 2q2c_A*
Probab=98.01 E-value=5.1e-06 Score=77.52 Aligned_cols=79 Identities=18% Similarity=0.312 Sum_probs=65.3
Q ss_pred CCCeEecccCcccccccEEEecCCCCCCCCCCCcccccchHHHHHHHHHhCCCCCCeEEEecCCChHHHHHhhhcccccE
Q 008863 452 QEPMRIGVPTRTFFEKFVVIKDDPLNGNSNDKNLRYDGFSIELFRLVVDHLNYDLPYEFVPHDGVYDDLINGVYDKVNYF 531 (550)
Q Consensus 452 ~~~~~i~~~~~~~~~pfv~~~~~~~~~~~~~~~~~~~GfciDll~~la~~l~f~~~~~~~~~~g~w~Gmi~el~~~~ad~ 531 (550)
..+++|... ..++||.+. ++. .+.||.+||++++++.+|++ +++++.+ |..++..|.+|++|+
T Consensus 41 ~~~l~v~~~--~~~~P~~~~-~~g----------~~~G~~~dl~~~i~~~~g~~--v~~~~~~--~~~~~~~l~~G~~D~ 103 (272)
T 2pvu_A 41 KKKVVVGTD--AAFAPFEYM-QKG----------KIVGFDVDLLDAVMKAAGLD--YELKNIG--WDPLFASLQSKEVDM 103 (272)
T ss_dssp CCCEEEEEC--CCBTTTBEE-ETT----------EEESHHHHHHHHHHHHHTCC--EEEEECC--HHHHHHHHHHTSSSE
T ss_pred CCeEEEEEC--CCCCCeEEe-cCC----------eEEEEHHHHHHHHHHHhCCc--eEEEECC--HHHHHHHHhCCCCCE
Confidence 456788764 357899876 322 68999999999999999998 7777754 999999999999999
Q ss_pred EeeceeeeeeeeeEEE
Q 008863 532 NYHDKLLFKKKKRLCL 547 (550)
Q Consensus 532 a~~~~ti~~~r~~~~~ 547 (550)
++++++++.+|++.+.
T Consensus 104 ~~~~~~~~~~r~~~~~ 119 (272)
T 2pvu_A 104 GISGITITDERKQSYD 119 (272)
T ss_dssp ECSSCBCCHHHHTTEE
T ss_pred EEeCCcCCHHHHhcCc
Confidence 9999999999976544
No 104
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii}
Probab=97.97 E-value=0.00064 Score=63.72 Aligned_cols=200 Identities=13% Similarity=0.120 Sum_probs=125.4
Q ss_pred CcEEEEEEEecCCccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEcCCChHHHHH
Q 008863 33 EVTKIGAIVDANSQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEETAV 112 (550)
Q Consensus 33 ~~i~IG~i~~~~~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~~~~~ 112 (550)
++-+||++++.+...-.....+++.+.++. |+.+.+...+...+ -.+....++. .++.+||-.........
T Consensus 11 ~~~~Igvi~~~~~~~~~~~~~gi~~~a~~~-----g~~~~~~~~~~~~~---~~~~~~~l~~-~~vdgiIi~~~~~~~~~ 81 (289)
T 3k9c_A 11 SSRLLGVVFELQQPFHGDLVEQIYAAATRR-----GYDVMLSAVAPSRA---EKVAVQALMR-ERCEAAILLGTRFDTDE 81 (289)
T ss_dssp --CEEEEEEETTCHHHHHHHHHHHHHHHHT-----TCEEEEEEEBTTBC---HHHHHHHHTT-TTEEEEEEETCCCCHHH
T ss_pred CCCEEEEEEecCCchHHHHHHHHHHHHHHC-----CCEEEEEeCCCCHH---HHHHHHHHHh-CCCCEEEEECCCCCHHH
Confidence 567899999444444445556666666553 67776655543332 3344455555 68888774322222233
Q ss_pred HHHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHHcCCeEEEEEEEcCCCCCcchhHHHHHHH
Q 008863 113 VAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLAEA 192 (550)
Q Consensus 113 v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~~~w~~v~ii~~~~~~g~~~~~~~~l~~~ 192 (550)
+. .+.. ++|+|..... .+. .. +-.+..+....+...+++|...|.++++++...... ......+.+.+.
T Consensus 82 ~~-~~~~-~iPvV~i~~~--~~~---~~---~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~-~~~~R~~Gf~~a 150 (289)
T 3k9c_A 82 LG-ALAD-RVPALVVARA--SGL---PG---VGAVRGDDVAGITLAVDHLTELGHRNIAHIDGADAP-GGADRRAGFLAA 150 (289)
T ss_dssp HH-HHHT-TSCEEEESSC--CSS---TT---SEEEEECHHHHHHHHHHHHHHTTCCSEEEECCTTST-THHHHHHHHHHH
T ss_pred HH-HHHc-CCCEEEEcCC--CCC---CC---CCEEEeChHHHHHHHHHHHHHCCCCcEEEEeCCCCc-cHHHHHHHHHHH
Confidence 33 3445 9999988765 221 12 234677888888999999988999999999876543 225667889999
Q ss_pred HhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcC--CCeEEEEEcCCHHHHHHHHHHHHHcCCCCC
Q 008863 193 LQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDK--QSRVFIVLQASLDMTIHLFTEANRMGLVGK 260 (550)
Q Consensus 193 l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~--~~~~ii~~~~~~~~~~~il~~a~~~g~~~~ 260 (550)
+++.| +.+.... +.... +..+....++++.+. .++.|+. .+...+..+++++++.|+.-+
T Consensus 151 l~~~g-~~~~~~~-~~~~~----~~~~~~~~~~~~l~~~~~~~ai~~--~~d~~A~g~~~al~~~g~~vP 212 (289)
T 3k9c_A 151 MDRHG-LSASATV-VTGGT----TETEGAEGMHTLLEMPTPPTAVVA--FNDRCATGVLDLLVRSGRDVP 212 (289)
T ss_dssp HHHTT-CGGGEEE-ECCCS----SHHHHHHHHHHHHTSSSCCSEEEE--SSHHHHHHHHHHHHHTTCCTT
T ss_pred HHHCC-CCCCccE-EECCC----CHHHHHHHHHHHHcCCCCCCEEEE--CChHHHHHHHHHHHHcCCCCC
Confidence 99988 7533222 22211 334444556666543 5666654 677788899999999998643
No 105
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A 3oqo_A* 3oqm_A* 3oqn_A*
Probab=97.95 E-value=0.00024 Score=68.24 Aligned_cols=200 Identities=11% Similarity=0.116 Sum_probs=125.2
Q ss_pred CcEEEEEEEecC-CccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEcCCChHHHH
Q 008863 33 EVTKIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEETA 111 (550)
Q Consensus 33 ~~i~IG~i~~~~-~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~~~~ 111 (550)
.+.+||+++|.. ..+......+++.+.++. |+.+.+ .++..++....+....++. .++.+||.........
T Consensus 59 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~-----g~~~~~--~~~~~~~~~~~~~~~~l~~-~~vdgiI~~~~~~~~~ 130 (332)
T 2hsg_A 59 KTTTVGVIIPDISNIFYAELARGIEDIATMY-----KYNIIL--SNSDQNQDKELHLLNNMLG-KQVDGIIFMSGNVTEE 130 (332)
T ss_dssp -CCEEEEEEC--CCSHHHHHHHHHHHHHHHH-----TCEEEE--EECCSHHHHHHHHHHHTSC-CSSCCEEECCSSCCHH
T ss_pred CCCEEEEEeCCCCCcHHHHHHHHHHHHHHHc-----CCEEEE--EeCCCChHHHHHHHHHHHh-CCCcEEEEecCCCCHH
Confidence 568999999853 344456667777777664 566554 4555555555555556654 6888777532222222
Q ss_pred HHHHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHHcCCeEEEEEEEcC-C--CCCcchhHHH
Q 008863 112 VVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDN-V--YGGDSGKLAL 188 (550)
Q Consensus 112 ~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~~~w~~v~ii~~~~-~--~g~~~~~~~~ 188 (550)
....+...++|+|..... .+. ...+ .+..++...+..++++|...|.+++++|.... . .. ....+.
T Consensus 131 -~~~~l~~~~iPvV~~~~~--~~~---~~~~---~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~--~~R~~G 199 (332)
T 2hsg_A 131 -HVEELKKSPVPVVLAASI--EST---NQIP---SVTIDYEQAAFDAVQSLIDSGHKNIAFVSGTLEEPINH--AKKVKG 199 (332)
T ss_dssp -HHHHHTTSSSCEEEESCC--CSC---TTSC---EEEECHHHHHHHHHHHHHTTTCSCEEEEESCTTSHHHH--TTHHHH
T ss_pred -HHHHHHhCCCCEEEEccc--cCC---CCCC---EEEEChHHHHHHHHHHHHHCCCCEEEEEeCCcccCccH--HHHHHH
Confidence 333455679999987754 221 1222 45677788888889999888999999998764 2 22 456788
Q ss_pred HHHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcC--CCeEEEEEcCCHHHHHHHHHHHHHcCCC
Q 008863 189 LAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDK--QSRVFIVLQASLDMTIHLFTEANRMGLV 258 (550)
Q Consensus 189 l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~--~~~~ii~~~~~~~~~~~il~~a~~~g~~ 258 (550)
+.+.+++.| +.+.....+.... ...+-...++++.+. .++.|+. .+...+..+++++++.|+.
T Consensus 200 f~~al~~~g-~~~~~~~~~~~~~----~~~~~~~~~~~ll~~~~~~~ai~~--~nd~~A~g~~~al~~~G~~ 264 (332)
T 2hsg_A 200 YKRALTESG-LPVRDSYIVEGDY----TYDSGIEAVEKLLEEDEKPTAIFV--GTDEMALGVIHGAQDRGLN 264 (332)
T ss_dssp HHHHHHTTT-CCCCGGGEEECCS----SHHHHHHHHHHHHHSSSCCSEEEE--SSHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHcC-CCCChheEEeCCC----CHHHHHHHHHHHHcCCCCCeEEEE--CChHHHHHHHHHHHHcCCC
Confidence 999999988 7543211111111 223334455555543 5677665 5677788899999999985
No 106
>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, SUG binding protein, structural genomics, PSI-2; 2.05A {Burkholderia phymatum}
Probab=97.95 E-value=9.7e-05 Score=69.46 Aligned_cols=203 Identities=9% Similarity=0.038 Sum_probs=122.1
Q ss_pred CcEEEEEEEecC-CccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHH---HHHHhhhcCCeEEEEcCCChH
Q 008863 33 EVTKIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAAT---AAQELINKEKVKVIAGMETWE 108 (550)
Q Consensus 33 ~~i~IG~i~~~~-~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~---~~~~li~~~~v~aiiG~~~s~ 108 (550)
++.+||+++|.. .........+++.+.++. |+.+.+ .++..++....+ ....++. .++.+||-.....
T Consensus 7 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~-----g~~~~~--~~~~~~~~~~~~~~~~~~~l~~-~~vdgiIi~~~~~ 78 (290)
T 2rgy_A 7 QLGIIGLFVPTFFGSYYGTILKQTDLELRAV-----HRHVVV--ATGCGESTPREQALEAVRFLIG-RDCDGVVVISHDL 78 (290)
T ss_dssp -CCEEEEECSCSCSHHHHHHHHHHHHHHHHT-----TCEEEE--ECCCSSSCHHHHHHHHHHHHHH-TTCSEEEECCSSS
T ss_pred CCCeEEEEeCCCCCchHHHHHHHHHHHHHHC-----CCEEEE--EeCCCchhhhhhHHHHHHHHHh-cCccEEEEecCCC
Confidence 467899999864 333345556666665553 666554 444445444444 4555655 5888777532222
Q ss_pred HHHHHHHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHHcCCeEEEEEEEcCCCCCcchhHHH
Q 008863 109 ETAVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLAL 188 (550)
Q Consensus 109 ~~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~~~w~~v~ii~~~~~~g~~~~~~~~ 188 (550)
....+ ..+...++|+|..... .+. . .+..+..+....+..++++|...|.+++++|.............+.
T Consensus 79 ~~~~~-~~l~~~~iPvV~~~~~--~~~---~---~~~~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~G 149 (290)
T 2rgy_A 79 HDEDL-DELHRMHPKMVFLNRA--FDA---L---PDASFCPDHRRGGELAAATLIEHGHRKLAVISGPFTASDNVERLDG 149 (290)
T ss_dssp CHHHH-HHHHHHCSSEEEESSC--CTT---S---GGGEECCCHHHHHHHHHHHHHHTTCCSEEEEESCTTCHHHHHHHHH
T ss_pred CHHHH-HHHhhcCCCEEEEccc--cCC---C---CCCEEEeCcHHHHHHHHHHHHHCCCceEEEEeCCCCCccHHHHHHH
Confidence 22223 3344579999998754 221 1 1224667888888889999988899999999876431101455677
Q ss_pred HHHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhc--CCCeEEEEEcCCHHHHHHHHHHHHHcCCCC
Q 008863 189 LAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQD--KQSRVFIVLQASLDMTIHLFTEANRMGLVG 259 (550)
Q Consensus 189 l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~--~~~~~ii~~~~~~~~~~~il~~a~~~g~~~ 259 (550)
+.+.+++.| +.+.....+.... +..+-...++++.+ ..++.|+. .+...+..+++++++.|+.-
T Consensus 150 f~~al~~~g-~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~ai~~--~~d~~A~g~~~al~~~G~~v 215 (290)
T 2rgy_A 150 FFDELARHG-IARDSVPLIESDF----SPEGGYAATCQLLESKAPFTGLFC--ANDTMAVSALARFQQLGISV 215 (290)
T ss_dssp HHHHHHTTT-CCGGGSCEEECCS----SHHHHHHHHHHHHHHTCCCSEEEE--SSHHHHHHHHHHHHHTTCCT
T ss_pred HHHHHHHcC-CCCCcccEEecCC----ChhHHHHHHHHHHhCCCCCcEEEE--CCcHHHHHHHHHHHHcCCCC
Confidence 888899888 6543211111111 22333344454443 35677765 56677888999999999863
No 107
>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A* 1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A* 1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A* 2pud_A* 1jfs_A* 1jh9_A* ...
Probab=97.95 E-value=0.0004 Score=66.87 Aligned_cols=205 Identities=12% Similarity=0.094 Sum_probs=124.8
Q ss_pred CcEEEEEEEecC-CccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEcCCChHHHH
Q 008863 33 EVTKIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEETA 111 (550)
Q Consensus 33 ~~i~IG~i~~~~-~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~~~~ 111 (550)
.+.+||+++|.. .........+++.+.++. |+.+.+ .++..++....+....++. .++.+||-........
T Consensus 57 ~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~-----g~~~~~--~~~~~~~~~~~~~~~~l~~-~~vdgiI~~~~~~~~~ 128 (340)
T 1qpz_A 57 HTKSIGLLATSSEAAYFAEIIEAVEKNCFQK-----GYTLIL--GNAWNNLEKQRAYLSMMAQ-KRVDGLLVMCSEYPEP 128 (340)
T ss_dssp CCSEEEEEESCSCSHHHHHHHHHHHHHHHHT-----TCEEEE--EECTTCHHHHHHHHHHHHH-TTCSEEEECCSCCCHH
T ss_pred CCCEEEEEeCCCCChHHHHHHHHHHHHHHHc-----CCEEEE--EeCCCCHHHHHHHHHHHHc-CCCCEEEEeCCCCChH
Confidence 467899999864 333345556666665553 666654 5666677666566666665 6888877422211111
Q ss_pred HHHHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHHcCCeEEEEEEEcCCCCCcchhHHHHHH
Q 008863 112 VVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLAE 191 (550)
Q Consensus 112 ~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~~~w~~v~ii~~~~~~g~~~~~~~~l~~ 191 (550)
.+..+....++|+|..... .+.. ++...+..++...+..++++|...|.+++++|.............+.+.+
T Consensus 129 ~~~~l~~~~~iPvV~~~~~--~~~~-----~~~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~g~~~~~~~~~R~~Gf~~ 201 (340)
T 1qpz_A 129 LLAMLEEYRHIPMVVMDWG--EAKA-----DFTDAVIDNAFEGGYMAGRYLIERGHREIGVIPGPLERNTGAGRLAGFMK 201 (340)
T ss_dssp HHHHHHTTTTSCEEEEEES--SCCC-----SSSEEEECCHHHHHHHHHHHHHHHTCCCEEEECCCTTSHHHHHHHHHHHH
T ss_pred HHHHHHhhCCCCEEEEecc--cCCC-----CCCCEEEECHHHHHHHHHHHHHHCCCCEEEEEeCCCccccHHHHHHHHHH
Confidence 1222223368999987754 2211 11234677888888888999888899999999865331101455677888
Q ss_pred HHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcC--CCeEEEEEcCCHHHHHHHHHHHHHcCCCC
Q 008863 192 ALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDK--QSRVFIVLQASLDMTIHLFTEANRMGLVG 259 (550)
Q Consensus 192 ~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~--~~~~ii~~~~~~~~~~~il~~a~~~g~~~ 259 (550)
.+++.| +.+.....+.... ...+-...++++.+. .++.|+. .+...+..+++++++.|+.-
T Consensus 202 al~~~g-~~~~~~~~~~~~~----~~~~~~~~~~~ll~~~~~~~ai~~--~nd~~A~g~~~al~~~G~~v 264 (340)
T 1qpz_A 202 AMEEAM-IKVPESWIVQGDF----EPESGYRAMQQILSQPHRPTAVFC--GGDIMAMGALCAADEMGLRV 264 (340)
T ss_dssp HHHHTT-CCCCGGGBCCCCS----SHHHHHHHHHHHHTSSSCCSEEEE--SSHHHHHHHHHHHHHTTCCT
T ss_pred HHHHCC-CCCChhheEeCCC----CHHHHHHHHHHHHcCCCCCcEEEE--CCHHHHHHHHHHHHHcCCCC
Confidence 999888 6543221121111 223334455565543 5677665 56677888999999999863
No 108
>2h0a_A TTHA0807, transcriptional regulator; repressor, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Thermus thermophilus}
Probab=97.94 E-value=8.7e-05 Score=69.16 Aligned_cols=199 Identities=10% Similarity=0.034 Sum_probs=113.6
Q ss_pred EEEEEEecC-CccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEcCCChHHHHHHH
Q 008863 36 KIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEETAVVA 114 (550)
Q Consensus 36 ~IG~i~~~~-~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~~~~~v~ 114 (550)
+||+++|.. ...-.....+++.+.++. |+.+. +.++..++....+....++. .++.+||........ ...
T Consensus 1 ~Igvi~~~~~~~~~~~~~~gi~~~~~~~-----g~~~~--~~~~~~~~~~~~~~~~~l~~-~~vdgiI~~~~~~~~-~~~ 71 (276)
T 2h0a_A 1 TVSVLLPFVATEFYRRLVEGIEGVLLEQ-----RYDLA--LFPILSLARLKRYLENTTLA-YLTDGLILASYDLTE-RFE 71 (276)
T ss_dssp CEEEEECCSCCHHHHHHHHHHHHHHGGG-----TCEEE--ECCCCSCCCCC----------CCCSEEEEESCCCC-----
T ss_pred CEEEEECCCCCHHHHHHHHHHHHHHHHC-----CCEEE--EEeCCCchhhHHHHHHHHHh-CCCCEEEEecCCCCH-HHH
Confidence 489999853 223334445555554443 55554 34554444333444455554 578777653222122 233
Q ss_pred HhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHHcCCeEEEEEEEcC-C---CCCcc-hhHHHH
Q 008863 115 EIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDN-V---YGGDS-GKLALL 189 (550)
Q Consensus 115 ~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~~~w~~v~ii~~~~-~---~g~~~-~~~~~l 189 (550)
..+...++|+|..... .+ + +..+..+....+..++++|...|.+++++|.... . ..... ...+.+
T Consensus 72 ~~~~~~~iPvV~~~~~--~~-------~-~~~V~~d~~~~~~~a~~~L~~~G~~~i~~i~~~~~~~~~~~~~~~~R~~gf 141 (276)
T 2h0a_A 72 EGRLPTERPVVLVDAQ--NP-------R-YDSVYLDNRLGGRLAGAYLARFPGPIFAIAVEEEPDRAFRRTVFAERMAGF 141 (276)
T ss_dssp --CCSCSSCEEEESSC--CT-------T-SEEEEECSHHHHHHHHHHHTTSSSCEEEEEECCSCCC---CCHHHHHHHHH
T ss_pred HHHhhcCCCEEEEecc--CC-------C-CCEEEEccHHHHHHHHHHHHHcCCCeEEEEecCcccccccchhHHHHHHHH
Confidence 4556689999998754 21 1 3456778888889999999888999999998764 3 21114 567788
Q ss_pred HHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcC--CCeEEEEEcCCHHHHHHHHHHHHHcCCCCC
Q 008863 190 AEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDK--QSRVFIVLQASLDMTIHLFTEANRMGLVGK 260 (550)
Q Consensus 190 ~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~--~~~~ii~~~~~~~~~~~il~~a~~~g~~~~ 260 (550)
.+.+++.| +.+.....+.... +..+....++++.+. .++.|+ +.+...+..+++++++.|+.-+
T Consensus 142 ~~~l~~~g-~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~ai~--~~~d~~a~g~~~al~~~g~~vP 207 (276)
T 2h0a_A 142 QEALKEAG-RPFSPDRLYITRH----SQEGGRLALRHFLEKASPPLNVF--AGADQVALGVLEEAVRLGLTPG 207 (276)
T ss_dssp HHHHHHTT-CCCCGGGEEEECS----SHHHHHHHHHHHHTTCCSSEEEE--CSSHHHHHHHHHHHHTTSCTTT
T ss_pred HHHHHHcC-CCCChHHeeecCC----ChHHHHHHHHHHHhCCCCCCEEE--ECCcHHHHHHHHHHHHcCCCCC
Confidence 89999988 6543211111111 223444556666554 356655 5677788899999999998643
No 109
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=97.92 E-value=0.00017 Score=67.96 Aligned_cols=202 Identities=9% Similarity=0.053 Sum_probs=122.8
Q ss_pred CcEEEEEEEecC-----CccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEc-CCC
Q 008863 33 EVTKIGAIVDAN-----SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAG-MET 106 (550)
Q Consensus 33 ~~i~IG~i~~~~-----~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG-~~~ 106 (550)
++-+||+++|.. ...-.....+++.+.++. |+.+.+...+..... ....+++...++.+||- +..
T Consensus 5 ~s~~Igvi~~~~~~~~~~~~~~~~~~gi~~~a~~~-----g~~~~~~~~~~~~~~----~~~~~~l~~~~vdGiIi~~~~ 75 (294)
T 3qk7_A 5 RTDAIALAYPSRPRVLNNSTFLEMISWIGIELGKR-----GLDLLLIPDEPGEKY----QSLIHLVETRRVDALIVAHTQ 75 (294)
T ss_dssp CCCEEEEEEESCSGGGSCHHHHHHHHHHHHHHHHT-----TCEEEEEEECTTCCC----HHHHHHHHHTCCSEEEECSCC
T ss_pred ccceEEEEecCCCccccChhHHHHHHHHHHHHHHC-----CCEEEEEeCCChhhH----HHHHHHHHcCCCCEEEEeCCC
Confidence 567899999832 223334555555555543 677777655432222 22333443357777664 322
Q ss_pred hHHHHHHHHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHHcCCeEEEEEEEcCCCCCcchhH
Q 008863 107 WEETAVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKL 186 (550)
Q Consensus 107 s~~~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~~~w~~v~ii~~~~~~g~~~~~~ 186 (550)
... .....+...++|+|..... .+. .. +-.+..+....+...+++|...|.+++++|.............
T Consensus 76 ~~~--~~~~~l~~~~iPvV~~~~~--~~~---~~---~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~ 145 (294)
T 3qk7_A 76 PED--FRLQYLQKQNFPFLALGRS--HLP---KP---YAWFDFDNHAGASLAVKRLLELGHQRIAFVSTDARISYVDQRL 145 (294)
T ss_dssp SSC--HHHHHHHHTTCCEEEESCC--CCS---SC---CEEEEECHHHHHHHHHHHHHHTTCCCEEEEEESSCCHHHHHHH
T ss_pred CCh--HHHHHHHhCCCCEEEECCC--CCC---CC---CCEEEcChHHHHHHHHHHHHHCCCceEEEEeCCcccchHHHHH
Confidence 222 3344566779999987754 111 12 3346778888889999999889999999998765421114567
Q ss_pred HHHHHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcC--CCeEEEEEcCCHHHHHHHHHHHHHcCCCCC
Q 008863 187 ALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDK--QSRVFIVLQASLDMTIHLFTEANRMGLVGK 260 (550)
Q Consensus 187 ~~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~--~~~~ii~~~~~~~~~~~il~~a~~~g~~~~ 260 (550)
+.+.+.+++.| +.+.......... +..+....++++.+. .++.|+. ++...+..+++++++.|+.-+
T Consensus 146 ~Gf~~al~~~g-~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~ai~~--~nd~~A~g~~~al~~~G~~vP 214 (294)
T 3qk7_A 146 QGYVQTMSEAG-LMPLAGYLQKADP----TRPGGYLAASRLLALEVPPTAIIT--DCNMLGDGVASALDKAGLLGG 214 (294)
T ss_dssp HHHHHHHHTTT-CCCCTTCEEEECS----SHHHHHHHHHHHHHSSSCCSEEEE--SSHHHHHHHHHHHHHTTCSST
T ss_pred HHHHHHHHHCC-CCCChhHeecCCC----CHHHHHHHHHHHHcCCCCCcEEEE--CCHHHHHHHHHHHHHcCCCCC
Confidence 78889999988 6542211111111 223444455555543 5666664 677788899999999998643
No 110
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=97.91 E-value=0.00023 Score=66.82 Aligned_cols=203 Identities=8% Similarity=0.028 Sum_probs=122.1
Q ss_pred CcEEEEEEEecCC---ccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEc-CCChH
Q 008863 33 EVTKIGAIVDANS---QMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAG-METWE 108 (550)
Q Consensus 33 ~~i~IG~i~~~~~---~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG-~~~s~ 108 (550)
++-+||+++|... ..-.....+++.+.++ .|+.+.+. +...+.... ....+++...++.+||- +....
T Consensus 7 ~s~~Igvv~~~~~~~~~~~~~~~~gi~~~a~~-----~g~~~~~~--~~~~~~~~~-~~~~~~l~~~~vdgiIi~~~~~~ 78 (288)
T 3gv0_A 7 KTNVIALVLSVDEELMGFTSQMVFGITEVLST-----TQYHLVVT--PHIHAKDSM-VPIRYILETGSADGVIISKIEPN 78 (288)
T ss_dssp CCCEEEEECBCCCCSSCHHHHHHHHHHHHHTT-----SSCEEEEC--CBSSGGGTT-HHHHHHHHHTCCSEEEEESCCTT
T ss_pred CCCEEEEEecCCccccHHHHHHHHHHHHHHHH-----cCCEEEEe--cCCcchhHH-HHHHHHHHcCCccEEEEecCCCC
Confidence 5688999999653 2223344444443333 26666554 333333222 23333343356766653 22211
Q ss_pred HHHHHHHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHHcCCeEEEEEEEcCCCCCcchhHHH
Q 008863 109 ETAVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLAL 188 (550)
Q Consensus 109 ~~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~~~w~~v~ii~~~~~~g~~~~~~~~ 188 (550)
. .....+...++|+|..... .+. .. +-.+..+....+..++++|...|.+++++|.............+.
T Consensus 79 -~-~~~~~l~~~~iPvV~i~~~--~~~---~~---~~~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~g 148 (288)
T 3gv0_A 79 -D-PRVRFMTERNMPFVTHGRS--DMG---IE---HAFHDFDNEAYAYEAVERLAQCGRKRIAVIVPPSRFSFHDHARKG 148 (288)
T ss_dssp -C-HHHHHHHHTTCCEEEESCC--CSS---CC---CEEEEECHHHHHHHHHHHHHHTTCCEEEEECCCTTSHHHHHHHHH
T ss_pred -c-HHHHHHhhCCCCEEEECCc--CCC---CC---CcEEEeCcHHHHHHHHHHHHHCCCCeEEEEcCCcccchHHHHHHH
Confidence 1 2334556689999987754 221 12 234677888889999999988999999999876432111456678
Q ss_pred HHHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcC--CCeEEEEEcCCHHHHHHHHHHHHHcCCCCC
Q 008863 189 LAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDK--QSRVFIVLQASLDMTIHLFTEANRMGLVGK 260 (550)
Q Consensus 189 l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~--~~~~ii~~~~~~~~~~~il~~a~~~g~~~~ 260 (550)
+.+.+++.| +.+.....+.... ...+....++++.+. .++.|+. .+...+..+++++++.|+.-+
T Consensus 149 f~~~l~~~g-~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~ai~~--~~d~~A~g~~~al~~~g~~vP 215 (288)
T 3gv0_A 149 FNRGIRDFG-LTEFPIDAVTIET----PLEKIRDFGQRLMQSSDRPDGIVS--ISGSSTIALVAGFEAAGVKIG 215 (288)
T ss_dssp HHHHHHHTT-CEECCCCSCCTTS----CHHHHHHHHHHHTTSSSCCSEEEE--SCHHHHHHHHHHHHTTTCCTT
T ss_pred HHHHHHHcC-CCcchhheecccc----chHHHHHHHHHHHhCCCCCcEEEE--cCcHHHHHHHHHHHHcCCCCC
Confidence 889999998 7664332222211 334455666666654 4666654 667778889999999998643
No 111
>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}
Probab=97.90 E-value=0.00022 Score=67.53 Aligned_cols=201 Identities=15% Similarity=0.151 Sum_probs=125.6
Q ss_pred CcEEEEEEEecC-CccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEcCCChHHHH
Q 008863 33 EVTKIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEETA 111 (550)
Q Consensus 33 ~~i~IG~i~~~~-~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~~~~ 111 (550)
.+-+||+++|.. ...-.....+++.+.++. |+.+.+ .++..++....+....++. .++.+||-........
T Consensus 14 ~s~~Igvi~~~~~~~~~~~~~~gi~~~a~~~-----g~~~~~--~~~~~~~~~~~~~~~~l~~-~~vdgiI~~~~~~~~~ 85 (303)
T 3kke_A 14 RSGTIGLIVPDVNNAVFADMFSGVQMAASGH-----STDVLL--GQIDAPPRGTQQLSRLVSE-GRVDGVLLQRREDFDD 85 (303)
T ss_dssp ---CEEEEESCTTSTTHHHHHHHHHHHHHHT-----TCCEEE--EECCSTTHHHHHHHHHHHS-CSSSEEEECCCTTCCH
T ss_pred CCCEEEEEeCCCcChHHHHHHHHHHHHHHHC-----CCEEEE--EeCCCChHHHHHHHHHHHh-CCCcEEEEecCCCCcH
Confidence 567899999865 334456667777666664 566554 4555566555555556655 6888777532222222
Q ss_pred -HHHHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHHcCCeEEEEEEEcCCCCCcchhHHHHH
Q 008863 112 -VVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLA 190 (550)
Q Consensus 112 -~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~~~w~~v~ii~~~~~~g~~~~~~~~l~ 190 (550)
.+..+. . ++|+|..... .+. ..+ .+..+....+...+++|...|.+++++|.............+.+.
T Consensus 86 ~~~~~l~-~-~iPvV~i~~~--~~~----~~~---~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~ 154 (303)
T 3kke_A 86 DMLAAVL-E-GVPAVTINSR--VPG----RVG---SVILDDQKGGGIATEHLITLGHSRIAFISGTAIHDTAQRRKEGYL 154 (303)
T ss_dssp HHHHHHH-T-TSCEEEESCC--CTT----CCC---EEEECHHHHHHHHHHHHHHTTCCSEEEEESCSSCHHHHHHHHHHH
T ss_pred HHHHHHh-C-CCCEEEECCc--CCC----CCC---EEEECcHHHHHHHHHHHHHCCCCeEEEEeCCCcCccHHHHHHHHH
Confidence 344444 4 9999998765 221 223 356788888888999998899999999986543211145677788
Q ss_pred HHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHh-----hcC--CCeEEEEEcCCHHHHHHHHHHHHHcCCCC
Q 008863 191 EALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKV-----QDK--QSRVFIVLQASLDMTIHLFTEANRMGLVG 259 (550)
Q Consensus 191 ~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i-----~~~--~~~~ii~~~~~~~~~~~il~~a~~~g~~~ 259 (550)
+.+++.| +.+.......... +..+-...++++ .+. .++.|+. .+...+..+++++++.|+.-
T Consensus 155 ~al~~~g-~~~~~~~~~~~~~----~~~~~~~~~~~l~~~~~l~~~~~~~ai~~--~nd~~A~g~~~al~~~G~~v 223 (303)
T 3kke_A 155 ETLASAG-LRSEAAWVVDAGW----EADAGSAALNTLYRGANLGKPDGPTAVVV--ASVNAAVGALSTALRLGLRV 223 (303)
T ss_dssp HHHHHTT-CCCCGGGEEECCS----SHHHHHHHHHHHHHHHCTTSTTSCSEEEE--SSHHHHHHHHHHHHHTTCCT
T ss_pred HHHHHcC-CCCCcceEEecCC----ChHHHHHHHHHhcchhhhcCCCCCcEEEE--CCHHHHHHHHHHHHHcCCCC
Confidence 8999988 6543211111111 233444556666 443 5666665 66778888999999999864
No 112
>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} SCOP: c.93.1.1 PDB: 7abp_A* 6abp_A* 1abe_A* 1abf_A* 5abp_A* 1bap_A* 1apb_A* 9abp_A* 2wrz_A
Probab=97.88 E-value=0.0011 Score=62.69 Aligned_cols=207 Identities=9% Similarity=-0.025 Sum_probs=127.3
Q ss_pred cEEEEEEEecC-CccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEc-CCChHHHH
Q 008863 34 VTKIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAG-METWEETA 111 (550)
Q Consensus 34 ~i~IG~i~~~~-~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG-~~~s~~~~ 111 (550)
+++||+++|.. ..+-.....+++.+.++. |+.+ .+.++ .++....+....++. .++.+||- |.......
T Consensus 2 ~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~-----g~~~--~~~~~-~~~~~~~~~i~~l~~-~~vdgiii~~~~~~~~~ 72 (306)
T 8abp_A 2 NLKLGFLVKQPEEPWFQTEWKFADKAGKDL-----GFEV--IKIAV-PDGEKTLNAIDSLAA-SGAKGFVICTPDPKLGS 72 (306)
T ss_dssp CEEEEEEESCTTSHHHHHHHHHHHHHHHHH-----TEEE--EEEEC-CSHHHHHHHHHHHHH-TTCCEEEEECSCGGGHH
T ss_pred CeEEEEEeCCCCchHHHHHHHHHHHHHHHc-----CCEE--EEeCC-CCHHHHHHHHHHHHH-cCCCEEEEeCCCchhhH
Confidence 68999999865 334456667777777765 5555 44555 477777777788887 57887764 44444445
Q ss_pred HHHHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHH-HcCCe-----EEEEEE-EcCCCCCcch
Q 008863 112 VVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLAR-KYNWR-----RVAAIY-EDNVYGGDSG 184 (550)
Q Consensus 112 ~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~-~~~w~-----~v~ii~-~~~~~g~~~~ 184 (550)
.....+...++|+|..... .+.......+.+..+..+....+...+++|. +.+-+ +++++. ..........
T Consensus 73 ~~~~~~~~~~iPvV~~~~~--~~~~~~~~~~~~~~V~~D~~~~g~~a~~~l~~~~g~~~~~~~~i~~~~~~~~~~~~~~~ 150 (306)
T 8abp_A 73 AIVAKARGYDMKVIAVDDQ--FVNAKGKPMDTVPLVMLAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARR 150 (306)
T ss_dssp HHHHHHHHTTCEEEEESSC--CBCTTSCBCTTSCEEEECHHHHHHHHHHHHHHHHHHHTCCGGGEEEEEEECTTSHHHHH
T ss_pred HHHHHHHHCCCcEEEeCCC--CCCccccccccccEEecChhHHHHHHHHHHHHHHHhcCCCccceEEEEecCCCChHHHH
Confidence 5555677789999998754 2222111001223456777777777777764 33433 888886 3332111145
Q ss_pred hHHHHHHHHhcCCCeE---EEEEeecCCCCCCCCChHHHHHHHHHhhcC--CCeE-EEEEcCCHHHHHHHHHHHHHcCCC
Q 008863 185 KLALLAEALQNVSSSE---IQSRLVLPPISSISDPKEAVRGELKKVQDK--QSRV-FIVLQASLDMTIHLFTEANRMGLV 258 (550)
Q Consensus 185 ~~~~l~~~l~~~g~~~---v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~--~~~~-ii~~~~~~~~~~~il~~a~~~g~~ 258 (550)
..+.+.+.+++.| .. +.... .... +.......++++.+. +.+. +|+ +.+...+..+++++++.|+.
T Consensus 151 R~~Gf~~~l~~~g-~~~~~~~~~~-~~~~-----~~~~~~~~~~~~l~~~~~~~a~~i~-~~nD~~A~g~~~al~~~g~~ 222 (306)
T 8abp_A 151 RTTGSMDALKAAG-FPEKQIYQVP-TKSN-----DIPGAFDAANSMLVQHPEVKHWLIV-GMNDSTVLGGVRATEGQGFK 222 (306)
T ss_dssp HHHHHHHHHHHHT-CCGGGEEEEE-CSSS-----SHHHHHHHHHHHHTTCTTCSEEEEE-CSSHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHhcC-CCCcEEEeec-cCCC-----ChHHHHHHHHHHHHhCCCCceEEEE-eCCcHHHHHHHHHHHHcCCC
Confidence 5677888888866 42 32221 1111 234445556666554 4555 455 77888889999999999986
Q ss_pred C
Q 008863 259 G 259 (550)
Q Consensus 259 ~ 259 (550)
.
T Consensus 223 v 223 (306)
T 8abp_A 223 A 223 (306)
T ss_dssp G
T ss_pred C
Confidence 3
No 113
>3qax_A Probable ABC transporter arginine-binding protein; periplasmic, transport PR; HET: ARG; 2.00A {Chlamydophila pneumoniae} PDB: 3g41_A* 3n26_A*
Probab=97.87 E-value=6.7e-06 Score=76.30 Aligned_cols=78 Identities=14% Similarity=0.191 Sum_probs=63.7
Q ss_pred CCeEecccCcccccccEEEecCCCCCCCCCCCcccccchHHHHHHHHHhCCCCCCeEEEecCCChHHHHHhhhcccccEE
Q 008863 453 EPMRIGVPTRTFFEKFVVIKDDPLNGNSNDKNLRYDGFSIELFRLVVDHLNYDLPYEFVPHDGVYDDLINGVYDKVNYFN 532 (550)
Q Consensus 453 ~~~~i~~~~~~~~~pfv~~~~~~~~~~~~~~~~~~~GfciDll~~la~~l~f~~~~~~~~~~g~w~Gmi~el~~~~ad~a 532 (550)
+.+++... ..++||.....+. .+.||++|+++++++.+|++ +++++. .|+.++..|.+|++|++
T Consensus 31 ~~l~v~~~--~~~~P~~~~~~~g----------~~~G~~~dl~~~i~~~~g~~--~~~~~~--~~~~~~~~l~~g~~D~~ 94 (268)
T 3qax_A 31 RIWIVGTN--ATYPPFEYVDAQG----------EVVGFDIDLAKAISEKLGKQ--LEVREF--AFDALILNLKKHRIDAI 94 (268)
T ss_dssp CEEEEEEC--SCBTTTBEECTTS----------CEESHHHHHHHHHHHHHTCE--EEEEEC--CGGGHHHHHHHTSSSEE
T ss_pred CeEEEEEC--CCCCCceEECCCC----------CEEEEEHHHHHHHHHHhCCe--EEEEec--CHHHHHHHHhCCCccEE
Confidence 34566653 3467888764432 68999999999999999988 777775 79999999999999999
Q ss_pred eeceeeeeeeeeEE
Q 008863 533 YHDKLLFKKKKRLC 546 (550)
Q Consensus 533 ~~~~ti~~~r~~~~ 546 (550)
+++++.+.+|++.+
T Consensus 95 ~~~~~~~~~r~~~~ 108 (268)
T 3qax_A 95 LAGMSITPSRQKEI 108 (268)
T ss_dssp CSCCBCCHHHHTTS
T ss_pred eecCccCHhHhcce
Confidence 99999999997644
No 114
>3gyb_A Transcriptional regulators (LACI-family transcriptional regulatory protein); protein structure initiative II(PSI II), nysgxrc; 1.60A {Corynebacterium glutamicum}
Probab=97.87 E-value=5.9e-05 Score=70.50 Aligned_cols=196 Identities=10% Similarity=0.025 Sum_probs=121.9
Q ss_pred CcEEEEEEEecC-CccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEcCCChHHHH
Q 008863 33 EVTKIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEETA 111 (550)
Q Consensus 33 ~~i~IG~i~~~~-~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~~~~ 111 (550)
++-+||+++|.. .........+++.+.++. |+.+.+...+ ++....+....+++ .++.+|| ........
T Consensus 4 ~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~-----g~~~~~~~~~---~~~~~~~~~~~l~~-~~vdgiI-~~~~~~~~ 73 (280)
T 3gyb_A 4 RTQLIAVLIDDYSNPWFIDLIQSLSDVLTPK-----GYRLSVIDSL---TSQAGTDPITSALS-MRPDGII-IAQDIPDF 73 (280)
T ss_dssp CCCEEEEEESCTTSGGGHHHHHHHHHHHGGG-----TCEEEEECSS---SSCSSSCHHHHHHT-TCCSEEE-EESCC---
T ss_pred ccCEEEEEeCCCCChHHHHHHHHHHHHHHHC-----CCEEEEEeCC---CchHHHHHHHHHHh-CCCCEEE-ecCCCChh
Confidence 567899999865 334456667776666554 5666554333 33333334445554 5888888 32222222
Q ss_pred HHHHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHHcCCeEEEEEEEcCCCCCcchhHHHHHH
Q 008863 112 VVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLAE 191 (550)
Q Consensus 112 ~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~~~w~~v~ii~~~~~~g~~~~~~~~l~~ 191 (550)
.+.. .++|+|..... .+. ....+ .+..+....+..++++|...|.++++++....... ....+.+.+
T Consensus 74 ~~~~----~~iPvV~~~~~--~~~--~~~~~---~V~~D~~~~g~~a~~~L~~~G~~~i~~i~~~~~~~--~~R~~gf~~ 140 (280)
T 3gyb_A 74 TVPD----SLPPFVIAGTR--ITQ--ASTHD---SVANDDFRGAEIATKHLIDLGHTHIAHLRVGSGAG--LRRFESFEA 140 (280)
T ss_dssp ---------CCCEEEESCC--CSS--SCSTT---EEEECHHHHHHHHHHHHHHTTCCSEEEECCSSHHH--HHHHHHHHH
T ss_pred hHhh----cCCCEEEECCC--CCC--CCCCC---EEEechHHHHHHHHHHHHHCCCCeEEEEeCCCchH--HHHHHHHHH
Confidence 2222 89999998765 211 12223 35678888899999999888999999999765434 667788999
Q ss_pred HHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcC--CCeEEEEEcCCHHHHHHHHHHHHHcCCCC
Q 008863 192 ALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDK--QSRVFIVLQASLDMTIHLFTEANRMGLVG 259 (550)
Q Consensus 192 ~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~--~~~~ii~~~~~~~~~~~il~~a~~~g~~~ 259 (550)
.+++.| ..+.... ..... +..+....++++.+. .++.|+. .+...+..+++++++.|+.-
T Consensus 141 ~l~~~~-~~~~~~~-~~~~~----~~~~~~~~~~~~l~~~~~~~ai~~--~~d~~a~g~~~al~~~g~~v 202 (280)
T 3gyb_A 141 TMRAHG-LEPLSND-YLGPA----VEHAGYTETLALLKEHPEVTAIFS--SNDITAIGALGAARELGLRV 202 (280)
T ss_dssp HHHHTT-CCCEECC-CCSCC----CHHHHHHHHHHHHHHCTTCCEEEE--SSHHHHHHHHHHHHHHTCCT
T ss_pred HHHHcC-cCCCccc-ccCCC----CHHHHHHHHHHHHhCCCCCCEEEE--CChHHHHHHHHHHHHcCCCC
Confidence 999988 7654332 22111 233444455555433 4666665 66778889999999999863
No 115
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=97.86 E-value=0.00081 Score=62.51 Aligned_cols=205 Identities=14% Similarity=0.126 Sum_probs=123.7
Q ss_pred CcEEEEEEEecC-CccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEcCCChHHHH
Q 008863 33 EVTKIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEETA 111 (550)
Q Consensus 33 ~~i~IG~i~~~~-~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~~~~ 111 (550)
++-+||+++|.. ...-.....+++.+.++. |+.+.+ .+...++..-.+....+++ .++.+||-..... .
T Consensus 6 ~s~~Igvi~~~~~~~~~~~~~~gi~~~~~~~-----g~~~~~--~~~~~~~~~~~~~~~~l~~-~~vdgiIi~~~~~--~ 75 (276)
T 3jy6_A 6 SSKLIAVIVANIDDYFSTELFKGISSILESR-----GYIGVL--FDANADIEREKTLLRAIGS-RGFDGLILQSFSN--P 75 (276)
T ss_dssp CCCEEEEEESCTTSHHHHHHHHHHHHHHHTT-----TCEEEE--EECTTCHHHHHHHHHHHHT-TTCSEEEEESSCC--H
T ss_pred CCcEEEEEeCCCCchHHHHHHHHHHHHHHHC-----CCEEEE--EeCCCCHHHHHHHHHHHHh-CCCCEEEEecCCc--H
Confidence 578999999865 222334445555444442 565554 5566676665566666665 5888777432222 3
Q ss_pred HHHHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHHcCCeEEEEEEEcCC-CCCcchhHHHHH
Q 008863 112 VVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNV-YGGDSGKLALLA 190 (550)
Q Consensus 112 ~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~~~w~~v~ii~~~~~-~g~~~~~~~~l~ 190 (550)
.....+...++|+|..... .+. ...+ .+..+....+..++++|...|.++++++..... ........+.+.
T Consensus 76 ~~~~~l~~~~iPvV~i~~~--~~~---~~~~---~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~~R~~gf~ 147 (276)
T 3jy6_A 76 QTVQEILHQQMPVVSVDRE--MDA---CPWP---QVVTDNFEAAKAATTAFRQQGYQHVVVLTSELELSRTRQERYRGIL 147 (276)
T ss_dssp HHHHHHHTTSSCEEEESCC--CTT---CSSC---EEECCHHHHHHHHHHHHHTTTCCEEEEEEECSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCEEEEecc--cCC---CCCC---EEEEChHHHHHHHHHHHHHcCCCeEEEEecCCCCCchHHHHHHHHH
Confidence 4445566789999998765 221 1123 466788888999999999999999999998654 210023445555
Q ss_pred HHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcC-CCeEEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEE
Q 008863 191 EALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDK-QSRVFIVLQASLDMTIHLFTEANRMGLVGKDSVWI 265 (550)
Q Consensus 191 ~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~-~~~~ii~~~~~~~~~~~il~~a~~~g~~~~~~~~i 265 (550)
+.+++.+ . + .+..... .....+....+.++.. .++.|+. .+...+..+++++++.|+.-+.-+-+
T Consensus 148 ~~l~~~~-~-~----~~~~~~~--~~~~~~~~~~~~l~~~~~~~ai~~--~~d~~a~g~~~al~~~g~~vP~di~v 213 (276)
T 3jy6_A 148 AAAQDVD-V-L----EVSESSY--NHSEVHQRLTQLITQNDQKTVAFA--LKERWLLEFFPNLIISGLIDNQTVTA 213 (276)
T ss_dssp TTCSEEE-E-E----EECSSSC--CHHHHHHHHHHHHHSSSSCEEEEE--SSHHHHHHHSHHHHHSSSCCSSSEEE
T ss_pred HHHHhCC-c-E----EEecccc--CCcHHHHHHHHHHhcCCCCcEEEE--eCcHHHHHHHHHHHHcCCCCCCcEEE
Confidence 5565554 3 1 1221100 0223444444555443 5666654 67788889999999999864333433
No 116
>2yln_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-BIND protein; HET: CYS GOL; 1.12A {Neisseria gonorrhoeae} PDB: 3zsf_A
Probab=97.85 E-value=9.3e-06 Score=76.26 Aligned_cols=79 Identities=16% Similarity=0.273 Sum_probs=65.3
Q ss_pred CCeEecccCcccccccEEEecCCCCCCCCCCCcccccchHHHHHHHHHhCCCCCCeEEEecCCChHHHHHhhhcccccEE
Q 008863 453 EPMRIGVPTRTFFEKFVVIKDDPLNGNSNDKNLRYDGFSIELFRLVVDHLNYDLPYEFVPHDGVYDDLINGVYDKVNYFN 532 (550)
Q Consensus 453 ~~~~i~~~~~~~~~pfv~~~~~~~~~~~~~~~~~~~GfciDll~~la~~l~f~~~~~~~~~~g~w~Gmi~el~~~~ad~a 532 (550)
++++|... ..++||.+..++. .+.||.+||++++++.+|++ +++++.+ |+.++..|.+|++|++
T Consensus 57 ~~l~v~~~--~~~~P~~~~~~~g----------~~~G~~~dl~~~i~~~~G~~--v~~~~~~--~~~~~~~l~~G~~D~~ 120 (283)
T 2yln_A 57 GTVTVGTE--GTYAPFTYHDKDG----------KLTGYDVEVTRAVAEKLGVK--VEFKETQ--WDSMMAGLKAGRFDVV 120 (283)
T ss_dssp CEEEEEEC--SEETTTEEECTTS----------CEESHHHHHHHHHHHHHTCE--EEEEECC--GGGHHHHHHHTSCSEE
T ss_pred CeEEEEEC--CCCCCeeEECCCC----------CEeeehHHHHHHHHHHcCCc--eEEEECC--HHHHHHHHHCCCcCEE
Confidence 45677763 2478998875332 68999999999999999998 8887764 9999999999999999
Q ss_pred eeceee-eeeeeeEEE
Q 008863 533 YHDKLL-FKKKKRLCL 547 (550)
Q Consensus 533 ~~~~ti-~~~r~~~~~ 547 (550)
++.+++ |.+|++.+.
T Consensus 121 ~~~~~~~t~~r~~~~~ 136 (283)
T 2yln_A 121 ANQVGLTSPERQATFD 136 (283)
T ss_dssp CSSCCCCSHHHHHHEE
T ss_pred EecCccCChhhhcceE
Confidence 999998 999987554
No 117
>2vha_A Periplasmic binding transport protein; periplasmic binding protein, ligand binding, ultrahigh resolution; HET: GLU; 1.00A {Shigella flexneri} PDB: 2ia4_A*
Probab=97.85 E-value=9.2e-06 Score=76.40 Aligned_cols=78 Identities=13% Similarity=0.169 Sum_probs=62.1
Q ss_pred CCeEecccCcccccccEEEecCCCCCCCCCCCcccccchHHHHHHHHHh----CC---CCCCeEEEecCCChHHHHHhhh
Q 008863 453 EPMRIGVPTRTFFEKFVVIKDDPLNGNSNDKNLRYDGFSIELFRLVVDH----LN---YDLPYEFVPHDGVYDDLINGVY 525 (550)
Q Consensus 453 ~~~~i~~~~~~~~~pfv~~~~~~~~~~~~~~~~~~~GfciDll~~la~~----l~---f~~~~~~~~~~g~w~Gmi~el~ 525 (550)
++++|... ..++||.+...+. .+.||++||+++|++. +| ++ +++++. .|+.++..|.
T Consensus 17 ~~l~v~~~--~~~~P~~~~~~~g----------~~~G~~~dl~~~ia~~l~~~~G~~~~~--v~~~~~--~~~~~~~~l~ 80 (287)
T 2vha_A 17 GVIVVGHR--ESSVPFSYYDNQQ----------KVVGYSQDYSNAIVEAVKKKLNKPDLQ--VKLIPI--TSQNRIPLLQ 80 (287)
T ss_dssp TEEEEEEC--SEETTTEEECSSS----------CEESHHHHHHHHHHHHHHHHTTCTTCE--EEEEEC--CTTTHHHHHH
T ss_pred CeEEEEEc--CCCCCceEECCCC----------CcccccHHHHHHHHHHHHHhcCCCCce--EEEEEC--CHHHHHHHHH
Confidence 44677653 3578998874432 6899999999999976 56 55 777775 6999999999
Q ss_pred cccccEEeeceeeeeeeeeEE
Q 008863 526 DKVNYFNYHDKLLFKKKKRLC 546 (550)
Q Consensus 526 ~~~ad~a~~~~ti~~~r~~~~ 546 (550)
+|++|++++++++|.+|++.+
T Consensus 81 ~g~~D~~~~~~~~t~~r~~~~ 101 (287)
T 2vha_A 81 NGTFDFECGSTTNNVERQKQA 101 (287)
T ss_dssp TTSCSEECSSCBCCHHHHTTC
T ss_pred CCCeeEEeccccCCcchhhcc
Confidence 999999999999999997644
No 118
>3ctp_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; HET: XLF; 1.41A {Alkaliphilus metalliredigens}
Probab=97.84 E-value=0.00018 Score=69.07 Aligned_cols=196 Identities=12% Similarity=0.090 Sum_probs=123.1
Q ss_pred CcEEEEEEEecC-CccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEcCCChHHHH
Q 008863 33 EVTKIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEETA 111 (550)
Q Consensus 33 ~~i~IG~i~~~~-~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~~~~ 111 (550)
.+.+||+++|.. ..+......+++.+.++. |+.+.+ .++..++....+....++. .++.+|| .......
T Consensus 59 ~~~~Igvi~~~~~~~~~~~~~~gi~~~~~~~-----g~~~~~--~~~~~~~~~~~~~~~~l~~-~~vdgiI-~~~~~~~- 128 (330)
T 3ctp_A 59 NSKTIGLMVPNISNPFFNQMASVIEEYAKNK-----GYTLFL--CNTDDDKEKEKTYLEVLQS-HRVAGII-ASRSQCE- 128 (330)
T ss_dssp -CCEEEEEESCTTSHHHHHHHHHHHHHHHHT-----TCEEEE--EECTTCHHHHHHHHHHHHH-TTCSEEE-EETCCCS-
T ss_pred CCCEEEEEeCCCCCcHHHHHHHHHHHHHHHC-----CCEEEE--EeCCCChHHHHHHHHHHHh-CCCCEEE-ECCCCCH-
Confidence 567899999864 333345556666665543 666654 4566677666666666765 6888888 4222111
Q ss_pred HHHHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHHcCCeEEEEEEEcCC--CCCcchhHHHH
Q 008863 112 VVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNV--YGGDSGKLALL 189 (550)
Q Consensus 112 ~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~~~w~~v~ii~~~~~--~g~~~~~~~~l 189 (550)
..+...++|+|..... .+. ..+ .+..++...+..++++|...|.+++++|..... .. ....+.|
T Consensus 129 ---~~l~~~~iPvV~~~~~--~~~----~~~---~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~--~~R~~Gf 194 (330)
T 3ctp_A 129 ---DEYANIDIPVVAFENH--ILD----NII---TISSDNYNGGRMAFDHLYEKGCRKILHIKGPEVFEAT--ELRYKGF 194 (330)
T ss_dssp ---GGGTTCCSCEEEESSC--CCT----TSC---EEEECHHHHHHHHHHHHHHTTCCSEEEEECCTTCHHH--HHHHHHH
T ss_pred ---HHHHhcCCCEEEEecc--CCC----CCC---EEEeCHHHHHHHHHHHHHHCCCCeEEEEeCCccCccH--HHHHHHH
Confidence 2345679999997754 221 223 356777788888899998889999999987643 22 4566778
Q ss_pred HHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhc-CCCeEEEEEcCCHHHHHHHHHHHHHcCCCCC
Q 008863 190 AEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQD-KQSRVFIVLQASLDMTIHLFTEANRMGLVGK 260 (550)
Q Consensus 190 ~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~-~~~~~ii~~~~~~~~~~~il~~a~~~g~~~~ 260 (550)
.+.+++.| +.+. ...+.... ...+-...++++.+ ..++.|+. .+...+..+++++++.|+.-+
T Consensus 195 ~~al~~~g-~~~~-~~~~~~~~----~~~~~~~~~~~ll~~~~~~ai~~--~~d~~A~g~~~al~~~G~~vP 258 (330)
T 3ctp_A 195 LDGARAKD-LEID-FIEFQHDF----QVKMLEEDINSMKDIVNYDGIFV--FNDIAAATVMRALKKRGVSIP 258 (330)
T ss_dssp HHHHHHTT-CCCE-EEECSSSC----CGGGGGCCCTTGGGGGGSSEEEE--SSHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHHHcC-CCcc-eeEEcCCC----CHHHHHHHHHHHhcCCCCcEEEE--CCHHHHHHHHHHHHHcCCCCC
Confidence 88999998 7654 22222111 11111222333333 25677765 556677889999999998643
No 119
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=97.83 E-value=0.00041 Score=65.25 Aligned_cols=205 Identities=9% Similarity=0.079 Sum_probs=127.9
Q ss_pred cEEEEEEEecC-CccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEc-CCChH---
Q 008863 34 VTKIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAG-METWE--- 108 (550)
Q Consensus 34 ~i~IG~i~~~~-~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG-~~~s~--- 108 (550)
.-+||+++|.. ...-.....+++.+.++. |+.+.+ .++..++....+....+++ .++.+||- |..+.
T Consensus 15 ~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~-----g~~~~~--~~~~~~~~~~~~~~~~l~~-~~vdgiIi~~~~~~~~~ 86 (298)
T 3tb6_A 15 NKTIGVLTTYISDYIFPSIIRGIESYLSEQ-----GYSMLL--TSTNNNPDNERRGLENLLS-QHIDGLIVEPTKSALQT 86 (298)
T ss_dssp CCEEEEEESCSSSTTHHHHHHHHHHHHHHT-----TCEEEE--EECTTCHHHHHHHHHHHHH-TCCSEEEECCSSTTSCC
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHHHHC-----CCEEEE--EeCCCChHHHHHHHHHHHH-CCCCEEEEecccccccC
Confidence 37899999875 334455667777666663 565554 5566677776677777776 58887774 33221
Q ss_pred HHHHHHHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHHcCCeEEEEEEEcCCCCCcchhHHH
Q 008863 109 ETAVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLAL 188 (550)
Q Consensus 109 ~~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~~~w~~v~ii~~~~~~g~~~~~~~~ 188 (550)
........+...++|+|..... .+.. ..+ .+..+....+..++++|...|.++++++...... ......+.
T Consensus 87 ~~~~~~~~~~~~~iPvV~~~~~--~~~~---~~~---~V~~d~~~~~~~a~~~L~~~G~~~i~~i~~~~~~-~~~~R~~g 157 (298)
T 3tb6_A 87 PNIGYYLNLEKNGIPFAMINAS--YAEL---AAP---SFTLDDVKGGMMAAEHLLSLGHTHMMGIFKADDT-QGVKRMNG 157 (298)
T ss_dssp TTHHHHHHHHHTTCCEEEESSC--CTTC---SSC---EEEECHHHHHHHHHHHHHHTTCCSEEEEEESSSH-HHHHHHHH
T ss_pred CcHHHHHHHHhcCCCEEEEecC--cCCC---CCC---EEEeCcHHHHHHHHHHHHHCCCCcEEEEcCCCCc-cHHHHHHH
Confidence 2333444566789999998765 2221 223 3567888889999999988999999999875542 11456777
Q ss_pred HHHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcC--C--CeEEEEEcCCHHHHHHHHHHHHHcCCCCC
Q 008863 189 LAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDK--Q--SRVFIVLQASLDMTIHLFTEANRMGLVGK 260 (550)
Q Consensus 189 l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~--~--~~~ii~~~~~~~~~~~il~~a~~~g~~~~ 260 (550)
+.+.+++.| +.+.......... ..........++++.+. . ++.|+ +.+...+..+++++++.|+.-+
T Consensus 158 f~~~l~~~g-~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~ai~--~~~d~~a~g~~~al~~~g~~vP 228 (298)
T 3tb6_A 158 FIQAHRERE-LFPSPDMIVTFTT--EEKESKLLEKVKATLEKNSKHMPTAIL--CYNDEIALKVIDMLREMDLKVP 228 (298)
T ss_dssp HHHHHHHTT-CCCCGGGEEEECH--HHHTTHHHHHHHHHHHHTTTSCCSEEE--CSSHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHHHHcC-CCCCcceEEEecc--cchhhhHHHHHHHHHhcCCCCCCeEEE--EeCcHHHHHHHHHHHHcCCCCC
Confidence 888999888 6543211111100 00000113334444332 3 56665 4677788899999999998643
No 120
>3e61_A Putative transcriptional repressor of ribose OPER; structural genomics, DNA-binding, transcripti regulation, PSI-2; 2.00A {Staphylococcus saprophyticus subsp}
Probab=97.82 E-value=0.00071 Score=62.89 Aligned_cols=195 Identities=9% Similarity=0.056 Sum_probs=115.7
Q ss_pred CcEEEEEEEecC-CccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEcCCChHHHH
Q 008863 33 EVTKIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEETA 111 (550)
Q Consensus 33 ~~i~IG~i~~~~-~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~~~~ 111 (550)
++.+||+++|.. ...-.....+++.+.++. |+.+. +.++..++....+....++. .++.+||-.... ..
T Consensus 7 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~-----g~~~~--~~~~~~~~~~~~~~~~~l~~-~~~dgiIi~~~~--~~ 76 (277)
T 3e61_A 7 KSKLIGLLLPDMSNPFFTLIARGVEDVALAH-----GYQVL--IGNSDNDIKKAQGYLATFVS-HNCTGMISTAFN--EN 76 (277)
T ss_dssp ---CEEEEESCTTSHHHHHHHHHHHHHHHHT-----TCCEE--EEECTTCHHHHHHHHHHHHH-TTCSEEEECGGG--HH
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHHHHHC-----CCEEE--EEeCCCCHHHHHHHHHHHHh-CCCCEEEEecCC--hH
Confidence 567899999864 333345556666555553 55554 45666677666666666665 588877753322 22
Q ss_pred HHHH-hhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHHcCCeEEEEEEEcCCCCCcchhHHHHH
Q 008863 112 VVAE-IASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLA 190 (550)
Q Consensus 112 ~v~~-~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~~~w~~v~ii~~~~~~g~~~~~~~~l~ 190 (550)
... .+...++|+|..... .+.. . .+..+....+..++++|...|.++++++.............+.+.
T Consensus 77 -~~~~~l~~~~iPvV~~~~~--~~~~-----~---~V~~D~~~~g~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~gf~ 145 (277)
T 3e61_A 77 -IIENTLTDHHIPFVFIDRI--NNEH-----N---GISTNHFKGGQLQAEVVRKGKGKNVLIVHENLLIDAFHQRVQGIK 145 (277)
T ss_dssp -HHHHHHHHC-CCEEEGGGC--C-----------------HHHHHHHHHHHHHHTTCCSEEEEESCTTSHHHHHHHHHHH
T ss_pred -HHHHHHHcCCCCEEEEecc--CCCC-----C---eEEechHHHHHHHHHHHHHCCCCeEEEEeCCCCCccHHHHHHHHH
Confidence 233 556779999998865 2211 1 567888888999999998889999999986543211145667788
Q ss_pred HHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhc-CCCeEEEEEcCCHHHHHHHHHHHHHcCCCCC
Q 008863 191 EALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQD-KQSRVFIVLQASLDMTIHLFTEANRMGLVGK 260 (550)
Q Consensus 191 ~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~-~~~~~ii~~~~~~~~~~~il~~a~~~g~~~~ 260 (550)
+.+++.| +.+.. ....... ....+.. ++. ..++.|+. .+...+..+++++++.|+.-+
T Consensus 146 ~~l~~~~-~~~~~-~~~~~~~----~~~~~~~----l~~~~~~~ai~~--~~d~~a~g~~~al~~~g~~vP 204 (277)
T 3e61_A 146 YILDQQR-IDYKM-LEATLLD----NDKKFID----LIKELSIDSIIC--SNDLLAINVLGIVQRYHFKVP 204 (277)
T ss_dssp HHHHC----CEEE-EEGGGGG----SHHHHHH----HHHHHTCCEEEE--SSHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHHcC-CCccc-eecCCCC----HHHHHHH----hhcCCCCCEEEE--CCcHHHHHHHHHHHHcCCCCC
Confidence 9999988 76654 2221111 1122222 333 36777765 567788889999999998643
No 121
>1xt8_A Putative amino-acid transporter periplasmic solut protein; ABC transport, cysteine uptake; 2.00A {Campylobacter jejuni} SCOP: c.94.1.1
Probab=97.81 E-value=1.7e-05 Score=74.71 Aligned_cols=79 Identities=14% Similarity=0.098 Sum_probs=64.3
Q ss_pred CCeEecccCcccccccEEEecCCCCCCCCCCCcccccchHHHHHHHHHhC---CCCCCeEEEecCCChHHHHHhhhcccc
Q 008863 453 EPMRIGVPTRTFFEKFVVIKDDPLNGNSNDKNLRYDGFSIELFRLVVDHL---NYDLPYEFVPHDGVYDDLINGVYDKVN 529 (550)
Q Consensus 453 ~~~~i~~~~~~~~~pfv~~~~~~~~~~~~~~~~~~~GfciDll~~la~~l---~f~~~~~~~~~~g~w~Gmi~el~~~~a 529 (550)
++++|... ..++||.+...+. .+.||++||++++++.+ |++ +++++. .|+.++..|..|++
T Consensus 44 ~~l~v~~~--~~~~P~~~~~~~g----------~~~G~~~dl~~~i~~~~~~~g~~--~~~~~~--~~~~~~~~l~~G~~ 107 (292)
T 1xt8_A 44 GVVRIGVF--GDKPPFGYVDEKG----------NNQGYDIALAKRIAKELFGDENK--VQFVLV--EAANRVEFLKSNKV 107 (292)
T ss_dssp SSEEEEEC--SEETTTEEECTTS----------CEESHHHHHHHHHHHHHHSCTTC--EEEEEC--CGGGHHHHHHTTSC
T ss_pred CeEEEEEC--CCCCCeeEECCCC----------CEeeEhHHHHHHHHHHhccCCce--EEEEEc--CHHHHHHHHhCCCe
Confidence 35677763 2468998764322 68999999999999999 999 777765 39999999999999
Q ss_pred cEEeeceeeeeeeeeEEE
Q 008863 530 YFNYHDKLLFKKKKRLCL 547 (550)
Q Consensus 530 d~a~~~~ti~~~r~~~~~ 547 (550)
|+++++++++.+|++.+.
T Consensus 108 D~~~~~~~~~~~r~~~~~ 125 (292)
T 1xt8_A 108 DIILANFTQTPQRAEQVD 125 (292)
T ss_dssp SEECSSCBCCHHHHTTEE
T ss_pred eEEeecCCCCcchhccee
Confidence 999999999999986543
No 122
>3g85_A Transcriptional regulator (LACI family); transcription regulator, PSI-II, structural genomics structure initiative; 1.84A {Clostridium acetobutylicum atcc 824}
Probab=97.80 E-value=0.0003 Score=65.99 Aligned_cols=202 Identities=9% Similarity=0.056 Sum_probs=124.0
Q ss_pred CcEEEEEEEec--CCccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEcCCChHHH
Q 008863 33 EVTKIGAIVDA--NSQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEET 110 (550)
Q Consensus 33 ~~i~IG~i~~~--~~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~~~ 110 (550)
++.+||+++|. +...-.....+++-+.++. |+.+.+...+...+. ..+....++ ..++.+||-.......
T Consensus 10 ~~~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~-----g~~~~~~~~~~~~~~--~~~~~~~l~-~~~vdgiIi~~~~~~~ 81 (289)
T 3g85_A 10 SKPTIALYWSSDISVNIISRFLRGLQSKLAKQ-----NYNYNVVICPYKTDC--LHLEKGISK-ENSFDAAIIANISNYD 81 (289)
T ss_dssp -CCEEEEEEETTSCGGGHHHHHHHHHHHHHHT-----TTCSEEEEEEECTTC--GGGCGGGST-TTCCSEEEESSCCHHH
T ss_pred CCceEEEEeccccchHHHHHHHHHHHHHHHHc-----CCeEEEEecCCCchh--HHHHHHHHh-ccCCCEEEEecCCccc
Confidence 57899999993 2334455667777666654 555555443222211 112223333 4688877754333333
Q ss_pred HHHHHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHHcCCeEEEEEEEcCCCCCcchhHHHHH
Q 008863 111 AVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLA 190 (550)
Q Consensus 111 ~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~~~w~~v~ii~~~~~~g~~~~~~~~l~ 190 (550)
..+... ...++|+|..... .+ . +-.+..+....+..++++|...|.++++++.............+.+.
T Consensus 82 ~~~~~~-~~~~iPvV~~~~~--~~-----~---~~~V~~D~~~~~~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~gf~ 150 (289)
T 3g85_A 82 LEYLNK-ASLTLPIILFNRL--SN-----K---YSSVNVDNYKMGEKASLLFAKKRYKSAAAILTESLNDAMDNRNKGFI 150 (289)
T ss_dssp HHHHHH-CCCSSCEEEESCC--CS-----S---SEEEEECHHHHHHHHHHHHHHTTCCBCEEEECCCSSHHHHHHHHHHH
T ss_pred HHHHHh-ccCCCCEEEECCC--CC-----C---CCEEEeCHHHHHHHHHHHHHHcCCCEEEEEeCCcccccHHHHHHHHH
Confidence 333333 4679999998754 22 1 23467888888999999998899999999997643211145677888
Q ss_pred HHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcC--CCeEEEEEcCCHHHHHHHHHHHHHcCCCCC
Q 008863 191 EALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDK--QSRVFIVLQASLDMTIHLFTEANRMGLVGK 260 (550)
Q Consensus 191 ~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~--~~~~ii~~~~~~~~~~~il~~a~~~g~~~~ 260 (550)
+.+++.| +.+.....+.... ...+....++++.+. .++.|+. .+...+..+++++++.|+.-+
T Consensus 151 ~~l~~~~-~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~ai~~--~~d~~a~g~~~al~~~g~~vP 215 (289)
T 3g85_A 151 ETCHKNG-IKISENHIIAAEN----SIHGGVDAAKKLMKLKNTPKALFC--NSDSIALGVISVLNKRQISIP 215 (289)
T ss_dssp HHHHHTT-CBCCGGGEEECCS----SHHHHHHHHHHHTTSSSCCSEEEE--SSHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHHcC-CCCChhheeccCC----CHHHHHHHHHHHHcCCCCCcEEEE--cCCHHHHHHHHHHHHcCCCCC
Confidence 8999988 6543221111111 234445556666554 4666654 677788889999999998643
No 123
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=97.80 E-value=0.0013 Score=61.84 Aligned_cols=203 Identities=7% Similarity=0.079 Sum_probs=121.9
Q ss_pred CcEEEEEEEecC------CccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEcCCC
Q 008863 33 EVTKIGAIVDAN------SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMET 106 (550)
Q Consensus 33 ~~i~IG~i~~~~------~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG~~~ 106 (550)
++-+||+++|.. ...-.....+++.+.++. |+.+. +.++..++....+....+++ .++.+||-...
T Consensus 6 ~s~~Igvi~~~~~~~~~~~~f~~~~~~gi~~~a~~~-----g~~~~--~~~~~~~~~~~~~~~~~l~~-~~vdGiI~~~~ 77 (295)
T 3hcw_A 6 QTYKIGLVLKGSEEPIRLNPFYINVLLGISETCNQH-----GYGTQ--TTVSNNMNDLMDEVYKMIKQ-RMVDAFILLYS 77 (295)
T ss_dssp CSCEEEEECSCCCHHHHSCHHHHHHHHHHHHHHHTT-----TCEEE--ECCCCSHHHHHHHHHHHHHT-TCCSEEEESCC
T ss_pred CCcEEEEEeecCCcccccChHHHHHHHHHHHHHHHC-----CCEEE--EEcCCCChHHHHHHHHHHHh-CCcCEEEEcCc
Confidence 567999999642 222233444444444432 56554 45555555444444445554 68887774322
Q ss_pred hHHHHHHHHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHHcCCeEEEEEEEcCCCCCcchhH
Q 008863 107 WEETAVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKL 186 (550)
Q Consensus 107 s~~~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~~~w~~v~ii~~~~~~g~~~~~~ 186 (550)
... ......+...++|+|..... .+... ...+ .+..+....+...+++|...|.+++++|.............
T Consensus 78 ~~~-~~~~~~l~~~~iPvV~i~~~--~~~~~-~~~~---~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~ 150 (295)
T 3hcw_A 78 KEN-DPIKQMLIDESMPFIVIGKP--TSDID-HQFT---HIDNDNILASENLTRHVIEQGVDELIFITEKGNFEVSKDRI 150 (295)
T ss_dssp CTT-CHHHHHHHHTTCCEEEESCC--CSSGG-GGSC---EEEECHHHHHHHHHHHHHHHCCSEEEEEEESSCCHHHHHHH
T ss_pred ccC-hHHHHHHHhCCCCEEEECCC--Ccccc-CCce---EEecCcHHHHHHHHHHHHHcCCccEEEEcCCccchhHHHHH
Confidence 211 13344556789999988755 22211 0122 35677788888899999888999999999765421114567
Q ss_pred HHHHHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcC-----CCeEEEEEcCCHHHHHHHHHHHHHcCCCCC
Q 008863 187 ALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDK-----QSRVFIVLQASLDMTIHLFTEANRMGLVGK 260 (550)
Q Consensus 187 ~~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~-----~~~~ii~~~~~~~~~~~il~~a~~~g~~~~ 260 (550)
+.+.+.+++.| +.+.... ... ...+....++++.+. .++.|+ +.+...+..+++++++.|+.-+
T Consensus 151 ~Gf~~al~~~g-~~~~~~~-~~~------~~~~~~~~~~~~l~~~~~~~~~~ai~--~~~d~~A~g~~~al~~~g~~vP 219 (295)
T 3hcw_A 151 QGFETVASQFN-LDYQIIE-TSN------EREVILNYMQNLHTRLKDPNIKQAII--SLDAMLHLAILSVLYELNIEIP 219 (295)
T ss_dssp HHHHHHHHHTT-CEEEEEE-ECS------CHHHHHHHHHHHHHHHTCTTSCEEEE--ESSHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHHHHHHcC-CCeeEEe-ccC------CHHHHHHHHHHHHhhcccCCCCcEEE--ECChHHHHHHHHHHHHcCCCCC
Confidence 88899999999 8765221 111 223333344444321 566665 4677778899999999998643
No 124
>2yjp_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-binding protein; 2.26A {Neisseria gonorrhoeae}
Probab=97.79 E-value=1.5e-05 Score=75.10 Aligned_cols=79 Identities=16% Similarity=0.138 Sum_probs=65.1
Q ss_pred CCeEecccCcccccccEEEecCCCCCCCCCCCcccccchHHHHHHHHHhC---CCCCCeEEEecCCChHHHHHhhhcccc
Q 008863 453 EPMRIGVPTRTFFEKFVVIKDDPLNGNSNDKNLRYDGFSIELFRLVVDHL---NYDLPYEFVPHDGVYDDLINGVYDKVN 529 (550)
Q Consensus 453 ~~~~i~~~~~~~~~pfv~~~~~~~~~~~~~~~~~~~GfciDll~~la~~l---~f~~~~~~~~~~g~w~Gmi~el~~~~a 529 (550)
+++||... ..++||.+..++. .+.||.+||++++++.+ |++ +++++.+ |+.++..|.+|++
T Consensus 55 ~~l~vg~~--~~~~P~~~~~~~g----------~~~G~~~dl~~~i~~~~~~~g~~--v~~~~~~--~~~~~~~l~~G~~ 118 (291)
T 2yjp_A 55 GVIRIGVF--GDKPPFGYVDANG----------KNQGFDVEIAKDLAKDLLGSPDK--VEFVLTE--AANRVEYVRSGKV 118 (291)
T ss_dssp TCEEEEEC--SEETTTEEECTTS----------CEESHHHHHHHHHHHHHHSCGGG--EEEEECC--GGGHHHHHHTTSC
T ss_pred CeEEEEEc--CCCCCceEECCCC----------CEeehHHHHHHHHHHHhccCCce--EEEEEcc--HHHHHHHHhCCCe
Confidence 45678763 3478998765332 68999999999999999 988 7777764 9999999999999
Q ss_pred cEEeeceeeeeeeeeEEE
Q 008863 530 YFNYHDKLLFKKKKRLCL 547 (550)
Q Consensus 530 d~a~~~~ti~~~r~~~~~ 547 (550)
|++++.++++.+|++.+.
T Consensus 119 D~~~~~~~~~~~r~~~~~ 136 (291)
T 2yjp_A 119 DLILANFTQTPERAEAVD 136 (291)
T ss_dssp SEECSSCBCCHHHHTTEE
T ss_pred eEEEeCCCCChHHHccce
Confidence 999999999999986554
No 125
>4i62_A Amino acid ABC transporter, periplasmic amino ACI protein, putative; center for structural genomics of infectious diseases (csgid national institute of allergy and infectious diseases (NIAI niaid; HET: ARG; 1.05A {Streptococcus pneumoniae}
Probab=97.77 E-value=1.2e-05 Score=74.53 Aligned_cols=82 Identities=15% Similarity=0.184 Sum_probs=65.2
Q ss_pred CeEecccCcccccccEEEecCCCCCCCCCCCcccccchHHHHHHHHHhCCCCCCeEEEecCCChHHHHHhhhcccccEEe
Q 008863 454 PMRIGVPTRTFFEKFVVIKDDPLNGNSNDKNLRYDGFSIELFRLVVDHLNYDLPYEFVPHDGVYDDLINGVYDKVNYFNY 533 (550)
Q Consensus 454 ~~~i~~~~~~~~~pfv~~~~~~~~~~~~~~~~~~~GfciDll~~la~~l~f~~~~~~~~~~g~w~Gmi~el~~~~ad~a~ 533 (550)
+++|... ..++||....... ++..+.||++||++++++.+|++ +++++. .|..++..|.+|++|+++
T Consensus 40 ~l~v~~~--~~~~P~~~~~~~~-------~~g~~~G~~~dl~~~~~~~~g~~--~~~~~~--~~~~~~~~l~~g~~D~~~ 106 (269)
T 4i62_A 40 KLVVALN--PDFAPFEYQKVVD-------GKNQIVGSDIELAKAIATELGVE--LELSPM--SFDNVLASVQSGKADLAI 106 (269)
T ss_dssp EEEEEEC--SCBTTTBEEEEET-------TEEEEESHHHHHHHHHHHHHTCE--EEEEEC--CHHHHHHHHHTTSCSEEC
T ss_pred eEEEEec--CCCCCceeecccC-------CCCcEeeecHHHHHHHHHHHCCc--eEEEEc--CHHHHHHHHhCCCccEEe
Confidence 4567653 3568888732111 13378999999999999999998 777775 799999999999999999
Q ss_pred eceeeeeeeeeEEEe
Q 008863 534 HDKLLFKKKKRLCLV 548 (550)
Q Consensus 534 ~~~ti~~~r~~~~~~ 548 (550)
++++.+.+|++.+..
T Consensus 107 ~~~~~~~~r~~~~~~ 121 (269)
T 4i62_A 107 SGVSKTDERSKVFDF 121 (269)
T ss_dssp SSCBCCHHHHTTEEE
T ss_pred cCCcCCHhHhhceec
Confidence 999999999876543
No 126
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=97.74 E-value=0.00054 Score=66.11 Aligned_cols=203 Identities=9% Similarity=0.051 Sum_probs=126.2
Q ss_pred CCcEEEEEEEecC-CccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEcCCChHHH
Q 008863 32 EEVTKIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEET 110 (550)
Q Consensus 32 ~~~i~IG~i~~~~-~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~~~ 110 (550)
..+-+||+++|.. ..+-.....+++.+.++. |+.+. +.++..++..-.+....++. .++.+||-.......
T Consensus 66 ~~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~-----g~~~~--~~~~~~~~~~~~~~i~~l~~-~~vdGiIi~~~~~~~ 137 (344)
T 3kjx_A 66 NRVNLVAVIIPSLSNMVFPEVLTGINQVLEDT-----ELQPV--VGVTDYLPEKEEKVLYEMLS-WRPSGVIIAGLEHSE 137 (344)
T ss_dssp SCCSEEEEEESCSSSSSHHHHHHHHHHHHTSS-----SSEEE--EEECTTCHHHHHHHHHHHHT-TCCSEEEEECSCCCH
T ss_pred CCCCEEEEEeCCCCcHHHHHHHHHHHHHHHHC-----CCEEE--EEeCCCCHHHHHHHHHHHHh-CCCCEEEEECCCCCH
Confidence 3567899999865 223334445555444332 66664 45666677766666667765 577766642211111
Q ss_pred HHHHHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHHcCCeEEEEEEEcC--C-CCCcchhHH
Q 008863 111 AVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDN--V-YGGDSGKLA 187 (550)
Q Consensus 111 ~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~~~w~~v~ii~~~~--~-~g~~~~~~~ 187 (550)
.....+...++|+|..+.. +.. +....+..++...+..++++|...|.+++++|.... . .. ....+
T Consensus 138 -~~~~~l~~~~iPvV~i~~~---~~~-----~~~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~--~~R~~ 206 (344)
T 3kjx_A 138 -AARAMLDAAGIPVVEIMDS---DGK-----PVDAMVGISHRRAGREMAQAILKAGYRRIGFMGTKMPLDYRA--RKRFE 206 (344)
T ss_dssp -HHHHHHHHCSSCEEEEEEC---SSC-----CSSEEEEECHHHHHHHHHHHHHHHTCCSCCEEESSTTTCHHH--HHHHH
T ss_pred -HHHHHHHhCCCCEEEEeCC---CCC-----CCCCEEEECcHHHHHHHHHHHHHCCCCeEEEEecCcccCccH--HHHHH
Confidence 3344566789999987433 111 122346778888888999999888999999998764 2 22 45567
Q ss_pred HHHHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcC--CCeEEEEEcCCHHHHHHHHHHHHHcCCCCC
Q 008863 188 LLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDK--QSRVFIVLQASLDMTIHLFTEANRMGLVGK 260 (550)
Q Consensus 188 ~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~--~~~~ii~~~~~~~~~~~il~~a~~~g~~~~ 260 (550)
.|.+.+++.| +.+.....+.... ....-...++++.+. .++.|+. ++...+..+++++++.|+.-+
T Consensus 207 Gf~~al~~~g-~~~~~~~~~~~~~----~~~~~~~~~~~ll~~~~~~~ai~~--~nd~~A~g~~~al~~~g~~vP 274 (344)
T 3kjx_A 207 GFTEVLGKNG-VEIEDREFYSGGS----ALAKGREMTQAMLERSPDLDFLYY--SNDMIAAGGLLYLLEQGIDIP 274 (344)
T ss_dssp HHHHHHHHTT-CCCSCEEECSSCC----CHHHHHHHHHHHHHHSTTCCEEEE--SSHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHHHHHcC-CCCChheEEeCCC----CHHHHHHHHHHHHhcCCCCCEEEE--CCHHHHHHHHHHHHHcCCCCC
Confidence 8889999988 7654333222211 223333444444332 5676664 667788899999999998643
No 127
>3bil_A Probable LACI-family transcriptional regulator; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum atcc 13032}
Probab=97.71 E-value=0.0018 Score=62.54 Aligned_cols=201 Identities=15% Similarity=0.089 Sum_probs=119.1
Q ss_pred CcEEEEEEEecC-CccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEcCCChHHHH
Q 008863 33 EVTKIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEETA 111 (550)
Q Consensus 33 ~~i~IG~i~~~~-~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~~~~ 111 (550)
.+.+||+++|.. ..+......+++.+.++. |+.+.+ .++..++....+....++. .++.+||-.......
T Consensus 65 ~s~~Igvi~~~~~~~~~~~~~~gi~~~a~~~-----g~~~~~--~~~~~~~~~~~~~~~~l~~-~~vdgiI~~~~~~~~- 135 (348)
T 3bil_A 65 RSNTIGVIVPSLINHYFAAMVTEIQSTASKA-----GLATII--TNSNEDATTMSGSLEFLTS-HGVDGIICVPNEECA- 135 (348)
T ss_dssp ---CEEEEESCSSSHHHHHHHHHHHHHHHHT-----TCCEEE--EECTTCHHHHHHHHHHHHH-TTCSCEEECCCGGGH-
T ss_pred CCCEEEEEeCCCCCcHHHHHHHHHHHHHHHc-----CCEEEE--EeCCCCHHHHHHHHHHHHh-CCCCEEEEeCCCCCh-
Confidence 467899999864 233334556666555543 566554 4555666655555666665 578877653332222
Q ss_pred HHHHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHHcCCeEEEEEEEcCCCCCcchhHHHHHH
Q 008863 112 VVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLAE 191 (550)
Q Consensus 112 ~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~~~w~~v~ii~~~~~~g~~~~~~~~l~~ 191 (550)
.....+...++|+|..... .+. ....+ .+..++...+..++++|...|.+++++|.............+.|.+
T Consensus 136 ~~~~~l~~~~iPvV~i~~~--~~~--~~~~~---~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~~ 208 (348)
T 3bil_A 136 NQLEDLQKQGMPVVLVDRE--LPG--DSTIP---TATSNPQPGIAAAVELLAHNNALPIGYLSGPMDTSTGRERLEDFKA 208 (348)
T ss_dssp HHHHHHHHC-CCEEEESSC--CSC--C-CCC---EEEEECHHHHHHHHHHHHHTTCCSEEEECCCTTSHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCEEEEccc--CCC--CCCCC---EEEeChHHHHHHHHHHHHHCCCCeEEEEeCCCCCccHHHHHHHHHH
Confidence 2333445679999987754 221 01223 3567777888889999988899999999865331101455677888
Q ss_pred HHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcCC-CeEEEEEcCCHHHHHHHHHHHHHcCCCC
Q 008863 192 ALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQ-SRVFIVLQASLDMTIHLFTEANRMGLVG 259 (550)
Q Consensus 192 ~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~~-~~~ii~~~~~~~~~~~il~~a~~~g~~~ 259 (550)
.+++.| +..... +.... ...+-...++++.+.. + .|+ +.+...+..+++++++.|+.-
T Consensus 209 al~~~g-~~~~~v--~~~~~----~~~~~~~~~~~ll~~~~~--ai~-~~nD~~A~g~~~al~~~G~~v 267 (348)
T 3bil_A 209 ACANSK-IGEQLV--FLGGY----EQSVGFEGATKLLDQGAK--TLF-AGDSMMTIGVIEACHKAGLVI 267 (348)
T ss_dssp HHHHTT-CCCCEE--ECCCS----SHHHHHHHHHHHHHTTCS--EEE-ESSHHHHHHHHHHHHHTTCCB
T ss_pred HHHHcC-cCccEE--EcCCC----CHHHHHHHHHHHHcCCCC--EEE-EcChHHHHHHHHHHHHcCCCC
Confidence 898888 622111 11111 2233344555555443 4 444 567778889999999999863
No 128
>3cs3_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative; 2.40A {Enterococcus faecalis}
Probab=97.71 E-value=0.0017 Score=60.27 Aligned_cols=192 Identities=10% Similarity=0.045 Sum_probs=115.2
Q ss_pred CcEEEEEEEecC-CccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEc-CCChHHH
Q 008863 33 EVTKIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAG-METWEET 110 (550)
Q Consensus 33 ~~i~IG~i~~~~-~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG-~~~s~~~ 110 (550)
++.+||+++|.. ...-.....+++.+.++. |+.+.+.. ...++.... ++ ++.+||- +.... .
T Consensus 7 ~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~-----g~~~~~~~--~~~~~~~~~----~~----~vdgiI~~~~~~~-~ 70 (277)
T 3cs3_A 7 QTNIIGVYLADYGGSFYGELLEGIKKGLALF-----DYEMIVCS--GKKSHLFIP----EK----MVDGAIILDWTFP-T 70 (277)
T ss_dssp CCCEEEEEECSSCTTTHHHHHHHHHHHHHTT-----TCEEEEEE--STTTTTCCC----TT----TCSEEEEECTTSC-H
T ss_pred CCcEEEEEecCCCChhHHHHHHHHHHHHHHC-----CCeEEEEe--CCCCHHHHh----hc----cccEEEEecCCCC-H
Confidence 567899999864 333344555665555442 66665543 332321100 11 4555443 22211 2
Q ss_pred HHHHHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHHcCCeEEEEEEEcCCCCCcchhHHHHH
Q 008863 111 AVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLA 190 (550)
Q Consensus 111 ~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~~~w~~v~ii~~~~~~g~~~~~~~~l~ 190 (550)
..+ ..+...++|+|..... .+. +.+..+..++...+..++++|...|.+++++|..+..........+.+.
T Consensus 71 ~~~-~~l~~~~iPvV~~~~~--~~~------~~~~~V~~D~~~~~~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~gf~ 141 (277)
T 3cs3_A 71 KEI-EKFAERGHSIVVLDRT--TEH------RNIRQVLLDNRGGATQAIEQFVNVGSKKVLLLSGPEKGYDSQERLAVST 141 (277)
T ss_dssp HHH-HHHHHTTCEEEESSSC--CCS------TTEEEEEECHHHHHHHHHHHHHHTTCSCEEEEECCTTSHHHHHHHHHHH
T ss_pred HHH-HHHHhcCCCEEEEecC--CCC------CCCCEEEeCcHHHHHHHHHHHHHcCCceEEEEeCCccCccHHHHHHHHH
Confidence 223 3345579999997754 221 1244577888888888999998889999999987643111145567788
Q ss_pred HHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcC---CCeEEEEEcCCHHHHHHHHHHHHHcCCCC
Q 008863 191 EALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDK---QSRVFIVLQASLDMTIHLFTEANRMGLVG 259 (550)
Q Consensus 191 ~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~---~~~~ii~~~~~~~~~~~il~~a~~~g~~~ 259 (550)
+.+++.| +.+. .. .... +..+....++++.+. .++.|+. .+...+..+++++++.|+.-
T Consensus 142 ~~l~~~g-~~~~-~~-~~~~-----~~~~~~~~~~~~l~~~~~~~~ai~~--~~d~~a~g~~~al~~~g~~v 203 (277)
T 3cs3_A 142 RELTRFG-IPYE-II-QGDF-----TEPSGYAAAKKILSQPQTEPVDVFA--FNDEMAIGVYKYVAETNYQM 203 (277)
T ss_dssp HHHHHTT-CCEE-EE-ECCS-----SHHHHHHHHHHHTTSCCCSSEEEEE--SSHHHHHHHHHHHTTSSCCB
T ss_pred HHHHHcC-CCee-EE-eCCC-----ChhHHHHHHHHHHhcCCCCCcEEEE--cChHHHHHHHHHHHHcCCCC
Confidence 8899888 7765 21 1111 223444556666544 5666654 66777888999999999863
No 129
>2dri_A D-ribose-binding protein; sugar transport; HET: RIP; 1.60A {Escherichia coli} SCOP: c.93.1.1 PDB: 1urp_A* 1ba2_A 1dbp_A* 1drj_A* 1drk_A* 2gx6_A*
Probab=97.71 E-value=0.0072 Score=55.78 Aligned_cols=198 Identities=10% Similarity=0.096 Sum_probs=119.3
Q ss_pred EEEEEEecC-CccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEc-CCChHHHHHH
Q 008863 36 KIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAG-METWEETAVV 113 (550)
Q Consensus 36 ~IG~i~~~~-~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG-~~~s~~~~~v 113 (550)
+||+++|.. ..+-.....+++.+.++. |+.+.+ .++..++..-.+....++. .++.+||- +.........
T Consensus 3 ~Igvi~~~~~~~f~~~~~~gi~~~~~~~-----g~~~~~--~~~~~~~~~~~~~i~~l~~-~~vdgiIi~~~~~~~~~~~ 74 (271)
T 2dri_A 3 TIALVVSTLNNPFFVSLKDGAQKEADKL-----GYNLVV--LDSQNNPAKELANVQDLTV-RGTKILLINPTDSDAVGNA 74 (271)
T ss_dssp EEEEEESCSSSHHHHHHHHHHHHHHHHH-----TCEEEE--EECTTCHHHHHHHHHHHTT-TTEEEEEECCSSTTTTHHH
T ss_pred EEEEEecCCCCHHHHHHHHHHHHHHHHc-----CcEEEE--eCCCCCHHHHHHHHHHHHH-cCCCEEEEeCCChHHHHHH
Confidence 689998754 333334556666666654 555544 4566676655555666665 68888774 3333322223
Q ss_pred HHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHHc--CCeEEEEEEEcCCCCCcchhHHHHHH
Q 008863 114 AEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKY--NWRRVAAIYEDNVYGGDSGKLALLAE 191 (550)
Q Consensus 114 ~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~~--~w~~v~ii~~~~~~g~~~~~~~~l~~ 191 (550)
...+...++|+|..... .+. .. ..-.+..++...+...+++|... +.+++++|.............+.+++
T Consensus 75 ~~~~~~~~iPvV~i~~~--~~~---~~--~~~~V~~D~~~~g~~a~~~L~~~g~g~~~I~~i~g~~~~~~~~~R~~Gf~~ 147 (271)
T 2dri_A 75 VKMANQANIPVITLDRQ--ATK---GE--VVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQ 147 (271)
T ss_dssp HHHHHHTTCCEEEESSC--CSS---SC--CSEEEEECHHHHHHHHHHHHHHHHCTTCEEEEEECCTTCHHHHHHHHHHHH
T ss_pred HHHHHHCCCcEEEecCC--CCC---Cc--eeEEEecChHHHHHHHHHHHHHHcCCCCeEEEEECCCCCccHhHHHHHHHH
Confidence 34455679999987754 221 11 11235677778888888888665 56899999865332111345677888
Q ss_pred HHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhc--CCCeEEEEEcCCHHHHHHHHHHHHHcCC
Q 008863 192 ALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQD--KQSRVFIVLQASLDMTIHLFTEANRMGL 257 (550)
Q Consensus 192 ~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~--~~~~~ii~~~~~~~~~~~il~~a~~~g~ 257 (550)
.+++.| +.+.... .... +...-...++++.+ ..++.|+. .+...+..+++++++.|+
T Consensus 148 al~~~g-~~~~~~~-~~~~-----~~~~~~~~~~~ll~~~~~~~ai~~--~nD~~A~g~~~al~~~g~ 206 (271)
T 2dri_A 148 AVAAHK-FNVLASQ-PADF-----DRIKGLNVMQNLLTAHPDVQAVFA--QNDEMALGALRALQTAGK 206 (271)
T ss_dssp HHHHHT-CEEEEEE-ECTT-----CHHHHHHHHHHHHHHCTTCCEEEE--SSHHHHHHHHHHHHHHTC
T ss_pred HHhcCC-CEEEEec-CCCC-----CHHHHHHHHHHHHHhCCCccEEEE--CCCcHHHHHHHHHHHcCC
Confidence 888888 8764322 1111 22333344444433 24666554 677788899999999998
No 130
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=97.68 E-value=0.003 Score=61.05 Aligned_cols=205 Identities=9% Similarity=0.074 Sum_probs=124.8
Q ss_pred CcEEEEEEEecCC-ccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEcCCChHHHH
Q 008863 33 EVTKIGAIVDANS-QMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEETA 111 (550)
Q Consensus 33 ~~i~IG~i~~~~~-~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~~~~ 111 (550)
.+-+||+++|... ..-.....+++.+.++. |+.+.+ .++..++....+....++. .++.+||-.......
T Consensus 69 ~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~-----g~~~~~--~~~~~~~~~~~~~~~~l~~-~~vdGiI~~~~~~~~- 139 (355)
T 3e3m_A 69 RSGFVGLLLPSLNNLHFAQTAQSLTDVLEQG-----GLQLLL--GYTAYSPEREEQLVETMLR-RRPEAMVLSYDGHTE- 139 (355)
T ss_dssp --CEEEEEESCSBCHHHHHHHHHHHHHHHHT-----TCEEEE--EECTTCHHHHHHHHHHHHH-TCCSEEEEECSCCCH-
T ss_pred CCCEEEEEeCCCCchHHHHHHHHHHHHHHHC-----CCEEEE--EeCCCChHHHHHHHHHHHh-CCCCEEEEeCCCCCH-
Confidence 4668999998652 22234445555555443 666644 4566677666666666665 577766642221122
Q ss_pred HHHHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHHcCCeEEEEEEEcCCCCC-cchhHHHHH
Q 008863 112 VVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGG-DSGKLALLA 190 (550)
Q Consensus 112 ~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~~~w~~v~ii~~~~~~g~-~~~~~~~l~ 190 (550)
.....+...++|+|..... +.. +....+..+....+..++++|...|.+++++|........ .....+.|.
T Consensus 140 ~~~~~l~~~~iPvV~i~~~---~~~-----~~~~~V~~D~~~~~~~a~~~L~~~G~r~I~~i~~~~~~~~~~~~R~~Gf~ 211 (355)
T 3e3m_A 140 QTIRLLQRASIPIVEIWEK---PAH-----PIGHTVGFSNERAAYDMTNALLARGFRKIVFLGEKDDDWTRGAARRAGFK 211 (355)
T ss_dssp HHHHHHHHCCSCEEEESSC---CSS-----CSSEEEECCHHHHHHHHHHHHHHTTCCSEEEEEESSCTTSHHHHHHHHHH
T ss_pred HHHHHHHhCCCCEEEECCc---cCC-----CCCCEEEeChHHHHHHHHHHHHHCCCCeEEEEccCcccChhHHHHHHHHH
Confidence 3344556789999987533 111 1123567888888888999998899999999998654210 145678899
Q ss_pred HHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhc--CCCeEEEEEcCCHHHHHHHHHHHHHcCCCCC
Q 008863 191 EALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQD--KQSRVFIVLQASLDMTIHLFTEANRMGLVGK 260 (550)
Q Consensus 191 ~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~--~~~~~ii~~~~~~~~~~~il~~a~~~g~~~~ 260 (550)
+.+++.| +.+.....+.... ....+-...++++.+ ..++.|+. .+...+..+++++++.|+.-+
T Consensus 212 ~al~~~g-~~~~~~~~~~~~~---~~~~~~~~~~~~ll~~~~~~~ai~~--~nD~~A~g~~~al~~~G~~vP 277 (355)
T 3e3m_A 212 RAMREAG-LNPDQEIRLGAPP---LSIEDGVAAAELILQEYPDTDCIFC--VSDMPAFGLLSRLKSIGVAVP 277 (355)
T ss_dssp HHHHHTT-SCSCCEEEESCSS---CCHHHHHHHHHHHHHHCTTCCEEEE--SSHHHHHHHHHHHHHHTCCTT
T ss_pred HHHHHCC-cCCCccEEEecCC---CCHHHHHHHHHHHHcCCCCCcEEEE--CChHHHHHHHHHHHHcCCCCC
Confidence 9999988 7543212121111 022333344444443 25677664 677788889999999998643
No 131
>2v25_A Major cell-binding factor; antigen, adhesin, aspartate, glutamate, transport, ABC transport, virulence factor, receptor; 1.49A {Campylobacter jejuni}
Probab=97.63 E-value=4.3e-05 Score=70.26 Aligned_cols=80 Identities=10% Similarity=0.124 Sum_probs=63.8
Q ss_pred CCeEecccCcccccccEEEecCCCCCCCCCCCcccccchHHHHHHHHHhC---CCCCCeEEEecCCChHHHHHhhhcccc
Q 008863 453 EPMRIGVPTRTFFEKFVVIKDDPLNGNSNDKNLRYDGFSIELFRLVVDHL---NYDLPYEFVPHDGVYDDLINGVYDKVN 529 (550)
Q Consensus 453 ~~~~i~~~~~~~~~pfv~~~~~~~~~~~~~~~~~~~GfciDll~~la~~l---~f~~~~~~~~~~g~w~Gmi~el~~~~a 529 (550)
++++|+.. ..++||.+...+. ..+.||++|+++++++.+ |++ +++++. .|+.++..|.+|++
T Consensus 38 ~~l~vg~~--~~~~p~~~~~~~~---------g~~~G~~~~l~~~~~~~~~~pg~~--v~~~~~--~~~~~~~~l~~g~~ 102 (259)
T 2v25_A 38 GQLIVGVK--NDVPHYALLDQAT---------GEIKGFEVDVAKLLAKSILGDDKK--IKLVAV--NAKTRGPLLDNGSV 102 (259)
T ss_dssp TCEEEEEC--SEETTTEEEETTT---------TEEESHHHHHHHHHHHHHHSCTTS--EEEEEC--CTTTHHHHHHTTSC
T ss_pred CeEEEEEC--CCCCCeEEEECCC---------CeEEEeeHHHHHHHHHHhcCCCcc--eEEEEc--CHHHHHHHHhCCCC
Confidence 45677753 3468898764221 168999999999999999 888 777775 59999999999999
Q ss_pred cEEeeceeeeeeeeeEEE
Q 008863 530 YFNYHDKLLFKKKKRLCL 547 (550)
Q Consensus 530 d~a~~~~ti~~~r~~~~~ 547 (550)
|+++++++.+.+|++.+.
T Consensus 103 D~~~~~~~~~~~~~~~~~ 120 (259)
T 2v25_A 103 DAVIATFTITPERKRIYN 120 (259)
T ss_dssp SEECSSCBCCHHHHTTEE
T ss_pred CEEEecCccCHHHHhcCc
Confidence 999999989988876443
No 132
>1byk_A Protein (trehalose operon repressor); LACI family, phosphate binding, protein structure, trehalose repressor, gene regulation; HET: T6P; 2.50A {Escherichia coli} SCOP: c.93.1.1
Probab=97.60 E-value=0.0061 Score=55.65 Aligned_cols=189 Identities=11% Similarity=0.038 Sum_probs=120.3
Q ss_pred EEEEEEEecC-CccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEc-CCChHHHHH
Q 008863 35 TKIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAG-METWEETAV 112 (550)
Q Consensus 35 i~IG~i~~~~-~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG-~~~s~~~~~ 112 (550)
-+||+++|.. ...-.....+++.+.++. |+.+.+ .++..++..-.+....++. .++.+||- +......
T Consensus 3 ~~Igvi~~~~~~~~~~~~~~gi~~~~~~~-----g~~~~~--~~~~~~~~~~~~~~~~l~~-~~vdgiI~~~~~~~~~-- 72 (255)
T 1byk_A 3 KVVAIIVTRLDSLSENLAVQTMLPAFYEQ-----GYDPIM--MESQFSPQLVAEHLGVLKR-RNIDGVVLFGFTGITE-- 72 (255)
T ss_dssp CEEEEEESCTTCHHHHHHHHHHHHHHHHH-----TCEEEE--EECTTCHHHHHHHHHHHHT-TTCCEEEEECCTTCCT--
T ss_pred CEEEEEeCCCCCccHHHHHHHHHHHHHHc-----CCEEEE--EeCCCcHHHHHHHHHHHHh-cCCCEEEEecCccccH--
Confidence 4799999854 233345556666666654 565544 4555666555555556655 57877664 2221111
Q ss_pred HHHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHHcCCeEEEEEEEc--C-CCCCcchhHHHH
Q 008863 113 VAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYED--N-VYGGDSGKLALL 189 (550)
Q Consensus 113 v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~~~w~~v~ii~~~--~-~~g~~~~~~~~l 189 (550)
......++|+|..... . .. +..+..++...+..++++|...|.++++++... + ... ....+.+
T Consensus 73 --~~l~~~~~pvV~~~~~--~-----~~---~~~V~~d~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~--~~R~~gf 138 (255)
T 1byk_A 73 --EMLAHWQSSLVLLARD--A-----KG---FASVCYDDEGAIKILMQRLYDQGHRNISYLGVPHSDVTTG--KRRHEAY 138 (255)
T ss_dssp --TTSGGGSSSEEEESSC--C-----SS---CEEEEECHHHHHHHHHHHHHHTTCCCEEEECCCTTSTTTT--HHHHHHH
T ss_pred --HHHHhcCCCEEEEccc--c-----CC---CCEEEEccHHHHHHHHHHHHHcCCCeEEEEecCCCCcccH--HHHHHHH
Confidence 2234568999887643 1 11 235677888888889999988899999999864 2 233 5667889
Q ss_pred HHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcCCCeEEEEEcCCHHHHHHHHHHHHHcCC
Q 008863 190 AEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGL 257 (550)
Q Consensus 190 ~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~~ii~~~~~~~~~~~il~~a~~~g~ 257 (550)
.+.+++.| +.+.. +.... ...+-...++++.+.+++.|+. .+...+..+++++++.|+
T Consensus 139 ~~al~~~g-~~~~~---~~~~~----~~~~~~~~~~~~l~~~~~ai~~--~~d~~A~g~~~al~~~g~ 196 (255)
T 1byk_A 139 LAFCKAHK-LHPVA---ALPGL----AMKQGYENVAKVITPETTALLC--ATDTLALGASKYLQEQRI 196 (255)
T ss_dssp HHHHHHTT-CCCEE---ECCCS----CHHHHHHHSGGGCCTTCCEEEE--SSHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcC-CCcce---eecCC----ccchHHHHHHHHhcCCCCEEEE--eChHHHHHHHHHHHHcCC
Confidence 99999988 75431 11111 2233344555655556777665 567788899999999998
No 133
>1gud_A ALBP, D-allose-binding periplasmic protein; periplasmic binding protein, X-RAY crystallography, hinge bending, conformational change; 1.7A {Escherichia coli} SCOP: c.93.1.1 PDB: 1gub_A 1rpj_A*
Probab=97.60 E-value=0.011 Score=55.00 Aligned_cols=213 Identities=8% Similarity=-0.006 Sum_probs=124.9
Q ss_pred EEEEEEEecC-CccchhHHHHHHHHHHHHhcCCCCcEEEEEEec--CCCCHHHHHHHHHHhhhcCCeEEEEc-CCChHHH
Q 008863 35 TKIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRD--HNRDPFQAATAAQELINKEKVKVIAG-METWEET 110 (550)
Q Consensus 35 i~IG~i~~~~-~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d--~~~~~~~a~~~~~~li~~~~v~aiiG-~~~s~~~ 110 (550)
.+||+++|.. ..+-.....+++.+.++. |+.+.+ .+ +..++..-.+....++. .++.+||- +......
T Consensus 2 ~~Igvi~~~~~~~f~~~~~~gi~~~a~~~-----g~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~vdgiIi~~~~~~~~ 73 (288)
T 1gud_A 2 AEYAVVLKTLSNPFWVDMKKGIEDEAKTL-----GVSVDI--FASPSEGDFQSQLQLFEDLSN-KNYKGIAFAPLSSVNL 73 (288)
T ss_dssp CEEEEEESCSSSHHHHHHHHHHHHHHHHH-----TCCEEE--EECSSTTCHHHHHHHHHHHHT-SSEEEEEECCSSSSTT
T ss_pred cEEEEEeCCCCchHHHHHHHHHHHHHHHc-----CCEEEE--eCCCCCCCHHHHHHHHHHHHH-cCCCEEEEeCCChHHH
Confidence 3689999754 223334556666666654 555544 44 56677665566666765 68888774 3332221
Q ss_pred HHHHHhhccCCccEEeccCCCCCCccc--CCCCCeEEEEecCcHHhHHHHHHHHHHc-C--CeEEEEEEEcCCCCCcchh
Q 008863 111 AVVAEIASRVQVPILSFAAPAVTPLSM--SRRWPYLIRMASNDSEQMKCIADLARKY-N--WRRVAAIYEDNVYGGDSGK 185 (550)
Q Consensus 111 ~~v~~~~~~~~iP~is~~~~~~~~~~~--~~~~~~~~~~~p~~~~~~~al~~~l~~~-~--w~~v~ii~~~~~~g~~~~~ 185 (550)
......+...++|+|..... .+... +...++.-.+..+....+...+++|... | .+++++|............
T Consensus 74 ~~~~~~~~~~~iPvV~~~~~--~~~~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~~G~~~~~I~~i~g~~~~~~~~~R 151 (288)
T 1gud_A 74 VMPVARAWKKGIYLVNLDEK--IDMDNLKKAGGNVEAFVTTDNVAVGAKGASFIIDKLGAEGGEVAIIEGKAGNASGEAR 151 (288)
T ss_dssp HHHHHHHHHTTCEEEEESSC--CCHHHHHHTTCCCSEEEECCHHHHHHHHHHHHHHHHGGGCEEEEEEECSTTCHHHHHH
T ss_pred HHHHHHHHHCCCeEEEECCC--CCcccccccCCceeEEECCChHHHHHHHHHHHHHHhCCCCCEEEEEeCCCCCchHhHH
Confidence 22233445579999987754 22111 0000110246788888888889988766 8 8999999865432111345
Q ss_pred HHHHHHHHhcC-CCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcC--CCeEEEEEcCCHHHHHHHHHHHHHcCCCCCCE
Q 008863 186 LALLAEALQNV-SSSEIQSRLVLPPISSISDPKEAVRGELKKVQDK--QSRVFIVLQASLDMTIHLFTEANRMGLVGKDS 262 (550)
Q Consensus 186 ~~~l~~~l~~~-g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~--~~~~ii~~~~~~~~~~~il~~a~~~g~~~~~~ 262 (550)
.+.+++.+++. | +.+..... ... ...+-...++++.+. .++.|+. .+...+..+++++++.|+. .+.
T Consensus 152 ~~Gf~~al~~~~g-~~~~~~~~-~~~-----~~~~~~~~~~~ll~~~~~~~ai~~--~nD~~A~g~~~al~~~G~~-~dv 221 (288)
T 1gud_A 152 RNGATEAFKKASQ-IKLVASQP-ADW-----DRIKALDVATNVLQRNPNIKAIYC--ANDTMAMGVAQAVANAGKT-GKV 221 (288)
T ss_dssp HHHHHHHHHTCTT-EEEEEEEE-CTT-----CHHHHHHHHHHHHHHCTTCCEEEE--SSHHHHHHHHHHHHHTTCT-TTS
T ss_pred HHHHHHHHHhCCC-cEEEEeec-CCc-----cHHHHHHHHHHHHHhCCCceEEEE--CCCchHHHHHHHHHhcCCC-CCe
Confidence 67788888877 8 76644221 111 223333444544332 4666664 6677888999999999985 343
Q ss_pred EEEEe
Q 008863 263 VWIVT 267 (550)
Q Consensus 263 ~~i~~ 267 (550)
..++-
T Consensus 222 ~vvGf 226 (288)
T 1gud_A 222 LVVGT 226 (288)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 44443
No 134
>3s99_A Basic membrane lipoprotein; ssgcid, structural genomics, SEA structural genomics center for infectious disease, adenine; HET: ADE; 2.05A {Brucella melitensis biovar abortus}
Probab=97.58 E-value=0.0043 Score=59.63 Aligned_cols=201 Identities=12% Similarity=0.041 Sum_probs=119.2
Q ss_pred CCcEEEEEEEecC---CccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEcCCChH
Q 008863 32 EEVTKIGAIVDAN---SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWE 108 (550)
Q Consensus 32 ~~~i~IG~i~~~~---~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~ 108 (550)
+++.+||++++-. ..+.....+|++.+.++.+ -++++.+.++..+.....+...++++ +++..||+.. ..
T Consensus 24 ~~~~kIglv~~g~i~D~~f~~~~~~G~~~~~~~~G-----~~~~~~~~e~~~~~~d~~~~l~~l~~-~g~d~Ii~~g-~~ 96 (356)
T 3s99_A 24 EEKLKVGFIYIGPPGDFGWTYQHDQARKELVEALG-----DKVETTFLENVAEGADAERSIKRIAR-AGNKLIFTTS-FG 96 (356)
T ss_dssp --CEEEEEECSSCGGGSSHHHHHHHHHHHHHHHHT-----TTEEEEEECSCCTTHHHHHHHHHHHH-TTCSEEEECS-GG
T ss_pred CCCCEEEEEEccCCCchhHHHHHHHHHHHHHHHhC-----CceEEEEEecCCCHHHHHHHHHHHHH-CCCCEEEECC-HH
Confidence 3689999999743 2445566777777777763 23666666666555556667777776 6899999864 33
Q ss_pred HHHHHHHhhccC-CccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHH-H-cCCeEEEEEEEcCCCCCcchh
Q 008863 109 ETAVVAEIASRV-QVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLAR-K-YNWRRVAAIYEDNVYGGDSGK 185 (550)
Q Consensus 109 ~~~~v~~~~~~~-~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~-~-~~w~~v~ii~~~~~~g~~~~~ 185 (550)
...++..++.++ ++|++..... .+. +.+..... +..++.-++-++- + -+-++|++|...... ....+
T Consensus 97 ~~~~~~~vA~~~Pdv~fv~id~~--~~~------~Nv~sv~~-~~~eg~ylaG~~A~~~tk~~kIGfVgg~~~p-~v~~~ 166 (356)
T 3s99_A 97 YMDPTVKVAKKFPDVKFEHATGY--KTA------DNMSAYNA-RFYEGRYVQGVIAAKMSKKGIAGYIGSVPVP-EVVQG 166 (356)
T ss_dssp GHHHHHHHHTTCTTSEEEEESCC--CCB------TTEEEEEE-CHHHHHHHHHHHHHHHCSSCEEEEEECCCCH-HHHHH
T ss_pred HHHHHHHHHHHCCCCEEEEEecc--ccC------CcEEEEEe-chhHHHHHHHHHHHHhcCCCEEEEECCCccH-HHHHH
Confidence 445566777665 7888876543 111 22333333 2344444444431 1 235799999865421 11345
Q ss_pred HHHHHHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcCCCeEEEEEcCCHHHHHHHHHHHHHcCC
Q 008863 186 LALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGL 257 (550)
Q Consensus 186 ~~~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~~ii~~~~~~~~~~~il~~a~~~g~ 257 (550)
...|...++..+ ..+.....+...- .+...-.+..+.+.+.++++|+. ..+.. .++++|++.|.
T Consensus 167 ~~GF~~G~k~~n-p~i~v~~~~~g~~---~d~~kg~~~a~~l~~~G~DvIf~-~~d~~---Gv~~aa~e~Gv 230 (356)
T 3s99_A 167 INSFMLGAQSVN-PDFRVKVIWVNSW---FDPGKEADAAKALIDQGVDIITQ-HTDST---AAIQVAHDRGI 230 (356)
T ss_dssp HHHHHHHHHTTC-TTCEEEEEECSSS---CCHHHHHHHHHHHHHTTCSEEEE-SSSSS---HHHHHHHHTTC
T ss_pred HHHHHHHHHHHC-CCCEEEEEECCCC---CChHHHHHHHHHHHhCCCcEEEE-CCCch---HHHHHHHHcCC
Confidence 677788887765 4433333232210 02233345566666779999988 66553 67899999874
No 135
>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, STR genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus}
Probab=97.58 E-value=0.0017 Score=61.35 Aligned_cols=198 Identities=10% Similarity=0.103 Sum_probs=122.8
Q ss_pred CcEEEEEEEecC------CccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEc-CC
Q 008863 33 EVTKIGAIVDAN------SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAG-ME 105 (550)
Q Consensus 33 ~~i~IG~i~~~~------~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG-~~ 105 (550)
.+-+||+++|.. ...-.....+++.+.++. |+.+. +.++..++....+....++. .++.+||- +.
T Consensus 21 ~~~~Igvi~~~~~~~~~~~~~~~~~~~gi~~~a~~~-----g~~~~--~~~~~~~~~~~~~~~~~l~~-~~vdgiIi~~~ 92 (305)
T 3huu_A 21 KTLTIGLIQKSSAPEIRQNPFNSDVLNGINQACNVR-----GYSTR--MTVSENSGDLYHEVKTMIQS-KSVDGFILLYS 92 (305)
T ss_dssp CCCEEEEECSCCSHHHHTSHHHHHHHHHHHHHHHHH-----TCEEE--ECCCSSHHHHHHHHHHHHHT-TCCSEEEESSC
T ss_pred CCCEEEEEeCCCccccccCcHHHHHHHHHHHHHHHC-----CCEEE--EEeCCCChHHHHHHHHHHHh-CCCCEEEEeCC
Confidence 567899999972 233345556666666654 55554 45555555444444444544 68887774 32
Q ss_pred ChHHHHHHHHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHHcCCeEEEEEEEcCCCCCcchh
Q 008863 106 TWEETAVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGK 185 (550)
Q Consensus 106 ~s~~~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~~~w~~v~ii~~~~~~g~~~~~ 185 (550)
.... .....+...++|+|..... . .....+ .+..+....+...+++|...|.+++++|............
T Consensus 93 ~~~~--~~~~~l~~~~iPvV~i~~~--~---~~~~~~---~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R 162 (305)
T 3huu_A 93 LKDD--PIEHLLNEFKVPYLIVGKS--L---NYENII---HIDNDNIDAAYQLTQYLYHLGHRHILFLQESGHYAVTEDR 162 (305)
T ss_dssp BTTC--HHHHHHHHTTCCEEEESCC--C---SSTTCC---EEECCHHHHHHHHHHHHHHTTCCSEEEEEESSCBHHHHHH
T ss_pred cCCc--HHHHHHHHcCCCEEEECCC--C---cccCCc---EEEeCHHHHHHHHHHHHHHCCCCeEEEEcCCcccchhHHH
Confidence 2221 3344556779999998765 2 112223 4678888888999999988899999999876542111456
Q ss_pred HHHHHHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHh-hc--CCCeEEEEEcCCHHHHHHHHHHHHHcCCCC
Q 008863 186 LALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKV-QD--KQSRVFIVLQASLDMTIHLFTEANRMGLVG 259 (550)
Q Consensus 186 ~~~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i-~~--~~~~~ii~~~~~~~~~~~il~~a~~~g~~~ 259 (550)
.+.+.+.+++.| +.+.. . +... ... ....++++ .+ ..++.|+. .+...+..+++++++.|+.-
T Consensus 163 ~~Gf~~~l~~~g-~~~~~-~-~~~~-----~~~-~~~~~~~~~l~~~~~~~ai~~--~nd~~A~g~~~al~~~g~~v 228 (305)
T 3huu_A 163 SVGFKQYCDDVK-ISNDC-V-VIKS-----MND-LRDFIKQYCIDASHMPSVIIT--SDVMLNMQLLNVLYEYQLRI 228 (305)
T ss_dssp HHHHHHHHHHTT-CCCCE-E-EECS-----HHH-HHHHC--------CCCSEEEE--SSHHHHHHHHHHHHHTTCCT
T ss_pred HHHHHHHHHHcC-CCccc-E-EecC-----cHH-HHHHHHHhhhcCCCCCCEEEE--CChHHHHHHHHHHHHcCCCC
Confidence 777888999988 76543 2 1111 112 33444555 33 25666664 67778888999999999863
No 136
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=97.57 E-value=0.0019 Score=61.99 Aligned_cols=200 Identities=10% Similarity=0.068 Sum_probs=126.2
Q ss_pred CcEEEEEEEecC-CccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEc-CCChHHH
Q 008863 33 EVTKIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAG-METWEET 110 (550)
Q Consensus 33 ~~i~IG~i~~~~-~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG-~~~s~~~ 110 (550)
.+-+||+++|.. ...-.....+++.+.++. |+.+. +.++..++..-.+....++. .++.+||- +.....
T Consensus 61 ~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~-----g~~~~--~~~~~~~~~~~~~~~~~l~~-~~vdGiIi~~~~~~~- 131 (339)
T 3h5o_A 61 KSRTVLVLIPSLANTVFLETLTGIETVLDAA-----GYQML--IGNSHYDAGQELQLLRAYLQ-HRPDGVLITGLSHAE- 131 (339)
T ss_dssp --CEEEEEESCSTTCTTHHHHHHHHHHHHHT-----TCEEE--EEECTTCHHHHHHHHHHHHT-TCCSEEEEECSCCCT-
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHHHHC-----CCEEE--EEeCCCChHHHHHHHHHHHc-CCCCEEEEeCCCCCH-
Confidence 467899999865 334456667777776663 56654 45666777666666667765 57777663 222211
Q ss_pred HHHHHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHHcCCeEEEEEEEcCC-CCCcchhHHHH
Q 008863 111 AVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNV-YGGDSGKLALL 189 (550)
Q Consensus 111 ~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~~~w~~v~ii~~~~~-~g~~~~~~~~l 189 (550)
.....+...++|+|..... .+. +.. .+..+....+..++++|...|.+++++|..... .. ....+.+
T Consensus 132 -~~~~~l~~~~iPvV~~~~~--~~~------~~~-~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~--~~R~~Gf 199 (339)
T 3h5o_A 132 -PFERILSQHALPVVYMMDL--ADD------GRC-CVGFSQEDAGAAITRHLLSRGKRRIGFLGAQLDERV--MKRLDGY 199 (339)
T ss_dssp -THHHHHHHTTCCEEEEESC--CSS------SCC-EEECCHHHHHHHHHHHHHHTTCCSEEEEEESCCHHH--HHHHHHH
T ss_pred -HHHHHHhcCCCCEEEEeec--CCC------CCe-EEEECHHHHHHHHHHHHHHCCCCeEEEEeCCCCccH--HHHHHHH
Confidence 3344556789999987543 111 112 567888888899999998889999999987643 22 4456778
Q ss_pred HHHHhcCCCeEEE-EEeecCCCCCCCCChHHHHHHHHHhhcC--CCeEEEEEcCCHHHHHHHHHHHHHcCCCCC
Q 008863 190 AEALQNVSSSEIQ-SRLVLPPISSISDPKEAVRGELKKVQDK--QSRVFIVLQASLDMTIHLFTEANRMGLVGK 260 (550)
Q Consensus 190 ~~~l~~~g~~~v~-~~~~~~~~~~~~~~~~d~~~~l~~i~~~--~~~~ii~~~~~~~~~~~il~~a~~~g~~~~ 260 (550)
.+.+.+.| +... ......... ....-...++++.+. .++.|+. ++...+..+++++++.|+.-+
T Consensus 200 ~~al~~~g-~~~~~~~~~~~~~~----~~~~~~~~~~~ll~~~~~~~ai~~--~nD~~A~g~~~al~~~G~~vP 266 (339)
T 3h5o_A 200 RAALDAAD-CRDAGLEWLDPQPS----SMQMGADMLDRALAERPDCDALFC--CNDDLAIGALARSQQLGIAVP 266 (339)
T ss_dssp HHHHHHTT-CCCGGGEEEECSCC----CHHHHHHHHHHHHHHCTTCCEEEE--SSHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHHHCC-CCCCChheEecCCC----CHHHHHHHHHHHHcCCCCCcEEEE--CChHHHHHHHHHHHHcCCCCC
Confidence 88888888 6211 111111111 223334445554432 5676664 667788899999999998643
No 137
>3jvd_A Transcriptional regulators; structural genomics, PSI-2, sugar binding protein, transcrip regulation, protein structure initiative; 2.30A {Corynebacterium glutamicum}
Probab=97.55 E-value=0.0035 Score=60.04 Aligned_cols=193 Identities=11% Similarity=0.132 Sum_probs=122.1
Q ss_pred CcEEEEEEEecC-CccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEcCCChHHHH
Q 008863 33 EVTKIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEETA 111 (550)
Q Consensus 33 ~~i~IG~i~~~~-~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~~~~ 111 (550)
.+-+||+++|.. ..+-.....+++.+.++. |+.+.+. ++.. +....+....++. .++.+||-...
T Consensus 63 ~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~-----g~~~~~~--~~~~-~~~~~~~~~~l~~-~~vdGiIi~~~----- 128 (333)
T 3jvd_A 63 RSALVGVIVPDLSNEYYSESLQTIQQDLKAA-----GYQMLVA--EANS-VQAQDVVMESLIS-IQAAGIIHVPV----- 128 (333)
T ss_dssp -CCEEEEEESCSSSHHHHHHHHHHHHHHHHH-----TCEEEEE--ECCS-HHHHHHHHHHHHH-HTCSEEEECCC-----
T ss_pred CCCEEEEEeCCCcChHHHHHHHHHHHHHHHC-----CCEEEEE--CCCC-hHHHHHHHHHHHh-CCCCEEEEcch-----
Confidence 567899999864 333445666777666665 5666554 4444 5444455555555 57887775333
Q ss_pred HHHHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHHcCCeEEEEEEEcCCCCCcchhHHHHHH
Q 008863 112 VVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLAE 191 (550)
Q Consensus 112 ~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~~~w~~v~ii~~~~~~g~~~~~~~~l~~ 191 (550)
...+...++|+|..... .+. ...+ .+..++...+..++++|...|.+++++|.............+.+.+
T Consensus 129 --~~~~~~~~iPvV~~~~~--~~~---~~~~---~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~~ 198 (333)
T 3jvd_A 129 --VGSIAPEGIPMVQLTRG--ELG---PGFP---RVLCDDEAGFFQLTESVLGGSGMNIAALVGEESLSTTQERMRGISH 198 (333)
T ss_dssp --TTCCC-CCSCEEEECC---------CCSC---EEEECHHHHHHHHHHHHCCSSSCEEEEEESCTTSHHHHHHHHHHHH
T ss_pred --HHHHhhCCCCEEEECcc--CCC---CCCC---EEEEChHHHHHHHHHHHHHCCCCeEEEEeCCCCCccHHHHHHHHHH
Confidence 33456779999998765 221 2223 3567888888889999988899999999976432111456778899
Q ss_pred HHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcC-CCeEEEEEcCCHHHHHHHHHHHHHcCCCC
Q 008863 192 ALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDK-QSRVFIVLQASLDMTIHLFTEANRMGLVG 259 (550)
Q Consensus 192 ~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~-~~~~ii~~~~~~~~~~~il~~a~~~g~~~ 259 (550)
.+++.| +.. ....... +..+....++++.+. .++.|+. .+...+..+++++++.|+.-
T Consensus 199 al~~~g-~~~--~~~~~~~-----~~~~~~~~~~~ll~~~~~~ai~~--~nd~~A~g~~~al~~~G~~v 257 (333)
T 3jvd_A 199 AASIYG-AEV--TFHFGHY-----SVESGEEMAQVVFNNGLPDALIV--ASPRLMAGVMRAFTRLNVRV 257 (333)
T ss_dssp HHHHTT-CEE--EEEECCS-----SHHHHHHHHHHHHHTCCCSEEEE--CCHHHHHHHHHHHHHTTCCT
T ss_pred HHHHCC-CCE--EEecCCC-----CHHHHHHHHHHHhcCCCCcEEEE--CCHHHHHHHHHHHHHcCCCC
Confidence 999999 761 1111111 234444555555544 3666664 67778889999999999864
No 138
>3uug_A Multiple sugar-binding periplasmic receptor CHVE; periplasmic binding protein, sugar-binding protein, sugar binding protein; HET: BDP; 1.75A {Agrobacterium tumefaciens} PDB: 3urm_A*
Probab=97.52 E-value=0.0071 Score=57.66 Aligned_cols=209 Identities=9% Similarity=-0.004 Sum_probs=127.5
Q ss_pred CcEEEEEEEecC-CccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEc-CCChHHH
Q 008863 33 EVTKIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAG-METWEET 110 (550)
Q Consensus 33 ~~i~IG~i~~~~-~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG-~~~s~~~ 110 (550)
+..+||+++|.. ..+-.....+++.+.++. |+.+.+ .++..++..-.+....++. .++.+||- |..+...
T Consensus 2 ~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~-----g~~~~~--~~~~~~~~~~~~~i~~~~~-~~vdgiIi~~~~~~~~ 73 (330)
T 3uug_A 2 DKGSVGIAMPTKSSARWIDDGNNIVKQLQEA-----GYKTDL--QYADDDIPNQLSQIENMVT-KGVKVLVIASIDGTTL 73 (330)
T ss_dssp CCCEEEEEECCSSSTHHHHHHHHHHHHHHHT-----TCEEEE--EECTTCHHHHHHHHHHHHH-HTCSEEEECCSSGGGG
T ss_pred CCcEEEEEeCCCcchHHHHHHHHHHHHHHHc-----CCEEEE--eeCCCCHHHHHHHHHHHHH-cCCCEEEEEcCCchhH
Confidence 357899999875 333445566676666664 555544 4577788777788888887 47887764 4444444
Q ss_pred HHHHHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHH-------cCCeEEEEEEEcCCCCCcc
Q 008863 111 AVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARK-------YNWRRVAAIYEDNVYGGDS 183 (550)
Q Consensus 111 ~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~-------~~w~~v~ii~~~~~~g~~~ 183 (550)
......+...++|+|..... .+.. . +....+..+....+..++++|.. .|.++++++..........
T Consensus 74 ~~~~~~~~~~giPvV~~~~~--~~~~--~--~~~~~V~~D~~~~g~~a~~~l~~~~~~~~~~G~~~i~~i~g~~~~~~~~ 147 (330)
T 3uug_A 74 SDVLKQAGEQGIKVIAYDRL--IRNS--G--DVSYYATFDNFQVGVLQATSITDKLGLKDGKGPFNIELFGGSPDDNNAF 147 (330)
T ss_dssp HHHHHHHHHTTCEEEEESSC--CCSC--T--TCCEEEEECHHHHHHHHHHHHHHHHTGGGTCCCEEEEECBCCTTCHHHH
T ss_pred HHHHHHHHHCCCCEEEECCC--CCCC--C--ceeEEEEeCHHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCCchHH
Confidence 45556677889999998765 2221 1 12234567888888888888877 6888999997644321113
Q ss_pred hhHHHHHHHHhcC---CCeEEEEEee----cCCCCCCCCChHHHHHHHHHhhc-----CCCeEEEEEcCCHHHHHHHHHH
Q 008863 184 GKLALLAEALQNV---SSSEIQSRLV----LPPISSISDPKEAVRGELKKVQD-----KQSRVFIVLQASLDMTIHLFTE 251 (550)
Q Consensus 184 ~~~~~l~~~l~~~---g~~~v~~~~~----~~~~~~~~~~~~d~~~~l~~i~~-----~~~~~ii~~~~~~~~~~~il~~ 251 (550)
...+.+++.+++. +.+.+..... +.... .....-...++++.+ ..++.|+ +.+...+..++++
T Consensus 148 ~R~~Gf~~al~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~ai~--~~nd~~A~g~~~a 222 (330)
T 3uug_A 148 FFYDGAMSVLKPYIDSGKLVVKSGQMGMDKVGTLR---WDPATAQARMDNLLSAYYTDAKVDAVL--SPYDGLSIGIISS 222 (330)
T ss_dssp HHHHHHHHHHHHHHHHTSEECTTCCCSHHHHBCGG---GCHHHHHHHHHHHHHHHCSSSCCCEEE--CSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccCceEEeecccccccccCCC---CCHHHHHHHHHHHHHhcCCCCCeEEEE--ECCCchHHHHHHH
Confidence 4456677777764 2033321100 00000 011223333444433 4566654 5677888899999
Q ss_pred HHHcCCCCC
Q 008863 252 ANRMGLVGK 260 (550)
Q Consensus 252 a~~~g~~~~ 260 (550)
+++.|+..+
T Consensus 223 l~~~g~~vP 231 (330)
T 3uug_A 223 LKGVGYGTK 231 (330)
T ss_dssp HHHTTCSSS
T ss_pred HHHcCCCCC
Confidence 999998654
No 139
>4fe7_A Xylose operon regulatory protein; HTH_ARAC, helix-turn-helix, PBP, periplasmic binding protein binding transcription regulator, DNA xylose; HET: XYS; 2.90A {Escherichia coli} PDB: 4fe4_A
Probab=97.52 E-value=0.0038 Score=61.80 Aligned_cols=205 Identities=11% Similarity=0.076 Sum_probs=122.5
Q ss_pred CCCcEEEEEEEecCCccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEcCCChHHH
Q 008863 31 IEEVTKIGAIVDANSQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEET 110 (550)
Q Consensus 31 ~~~~i~IG~i~~~~~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~~~ 110 (550)
.+++.+||+++|.+.........+++-+.++. |+.+.+...+... . ....++. .++.+||-... .
T Consensus 22 ~~~s~~Igvv~~~~~~f~~~l~~gi~~~a~~~-----g~~~~i~~~~~~~---~---~i~~l~~-~~vDGiIi~~~---~ 86 (412)
T 4fe7_A 22 FTKRHRITLLFNANKAYDRQVVEGVGEYLQAS-----QSEWDIFIEEDFR---A---RIDKIKD-WLGDGVIADFD---D 86 (412)
T ss_dssp CCCCEEEEEECCTTSHHHHHHHHHHHHHHHHH-----TCCEEEEECC-CC---------------CCCSEEEEETT---C
T ss_pred CCCCceEEEEeCCcchhhHHHHHHHHHHHHhc-----CCCeEEEecCCcc---c---hhhhHhc-CCCCEEEEecC---C
Confidence 34678999999866544556667777776665 5556554433221 1 1233443 57777775222 2
Q ss_pred HHHHHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHHcCCeEEEEEEEcCCCCC--cchhHHH
Q 008863 111 AVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGG--DSGKLAL 188 (550)
Q Consensus 111 ~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~~~w~~v~ii~~~~~~g~--~~~~~~~ 188 (550)
..+...+...++|+|..... .+.... .+.+-.+..++...+..++++|...|.+++++|........ .....+.
T Consensus 87 ~~~~~~l~~~~iPvV~i~~~--~~~~~~--~~~~~~V~~D~~~~g~~a~~~L~~~G~r~I~~i~~~~~~~~~~~~~R~~G 162 (412)
T 4fe7_A 87 KQIEQALADVDVPIVGVGGS--YHLAES--YPPVHYIATDNYALVESAFLHLKEKGVNRFAFYGLPESSGKRWATEREYA 162 (412)
T ss_dssp HHHHHHHTTCCSCEEEEEEC--CSSGGG--SCSSEEEEECHHHHHHHHHHHHHHTTCCEEEEECCCTTSCCHHHHHHHHH
T ss_pred hHHHHHHhhCCCCEEEecCC--cccccc--CCCCCEEEeCHHHHHHHHHHHHHHcCCceEEEecccccccccHHHHHHHH
Confidence 23445667789999988765 222111 12234567888888999999999999999999987654210 1556788
Q ss_pred HHHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhh-c-CCCeEEEEEcCCHHHHHHHHHHHHHcCCCCC
Q 008863 189 LAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQ-D-KQSRVFIVLQASLDMTIHLFTEANRMGLVGK 260 (550)
Q Consensus 189 l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~-~-~~~~~ii~~~~~~~~~~~il~~a~~~g~~~~ 260 (550)
+.+.+.+.| +........... ..+.......+.++. . ..++.|+. .+...+..+++++++.|+.-+
T Consensus 163 f~~al~~~g-~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~aI~~--~nD~~A~g~~~al~~~G~~vP 230 (412)
T 4fe7_A 163 FRQLVAEEK-YRGVVYQGLETA---PENWQHAQNRLADWLQTLPPQTGIIA--VTDARARHILQVCEHLHIPVP 230 (412)
T ss_dssp HHHHHTTSS-SCCEEECCSCSS---CSSHHHHHHHHHHHHHHSCTTEEEEE--SSHHHHHHHHHHHHHHTCCTT
T ss_pred HHHHHHHcC-CCcccccccccc---ccchhhHHHHHHHHHHhCCCCeEEEE--EecHHHHHHHHHHHHcCCCCC
Confidence 899999988 654321111110 012223334444433 2 25676665 677788899999999998543
No 140
>3hs3_A Ribose operon repressor; PSI-II, NYSGXRC, periplasmic binding protein, structural genomics, protein structure initiative; 1.60A {Lactobacillus acidophilus}
Probab=97.51 E-value=0.0021 Score=59.72 Aligned_cols=194 Identities=14% Similarity=0.087 Sum_probs=125.4
Q ss_pred CcEEEEEEEecC-CccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEcCCChHHHH
Q 008863 33 EVTKIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEETA 111 (550)
Q Consensus 33 ~~i~IG~i~~~~-~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~~~~ 111 (550)
++-+||+++|.. ...-.....+++.+.++. |+.+ +.+.++..++..-.+....++. .++.+||-..
T Consensus 9 ~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~-----g~~~-~~~~~~~~~~~~~~~~~~~l~~-~~vdgiIi~~------ 75 (277)
T 3hs3_A 9 KSKMIGIIIPDLNNRFYAQIIDGIQEVIQKE-----GYTA-LISFSTNSDVKKYQNAIINFEN-NNVDGIITSA------ 75 (277)
T ss_dssp CCCEEEEEESCTTSHHHHHHHHHHHHHHHHT-----TCEE-EEEECSSCCHHHHHHHHHHHHH-TTCSEEEEEC------
T ss_pred CCCEEEEEeCCCCChhHHHHHHHHHHHHHHC-----CCCE-EEEEeCCCChHHHHHHHHHHHh-CCCCEEEEcc------
Confidence 568999999865 333345556666555553 5551 3346677777666666666665 5887777432
Q ss_pred HHHHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHHcCCeEEEEEEEcCCCCCcchhHHHHHH
Q 008863 112 VVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLAE 191 (550)
Q Consensus 112 ~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~~~w~~v~ii~~~~~~g~~~~~~~~l~~ 191 (550)
.....+...++|+|..... + . .. +.+ .+..+....+...+++|. .|.++++++.............+.+.+
T Consensus 76 ~~~~~~~~~~iPvV~~~~~--~-~-~~---~~~-~V~~D~~~~g~~a~~~L~-~G~~~I~~i~~~~~~~~~~~R~~Gf~~ 146 (277)
T 3hs3_A 76 FTIPPNFHLNTPLVMYDSA--N-I-ND---DIV-RIVSNNTKGGKESIKLLS-KKIEKVLIQHWPLSLPTIRERIEAMTA 146 (277)
T ss_dssp CCCCTTCCCSSCEEEESCC--C-C-CS---SSE-EEEECHHHHHHHHHHTSC-TTCCEEEEEESCTTSHHHHHHHHHHHH
T ss_pred hHHHHHHhCCCCEEEEccc--c-c-CC---CCE-EEEEChHHHHHHHHHHHH-hCCCEEEEEeCCCcCccHHHHHHHHHH
Confidence 1122356679999987643 1 1 11 224 678888888888999888 999999999876432111456678889
Q ss_pred HHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcC--CCeEEEEEcCCHHHHHHHHHHHHHcCCCCC
Q 008863 192 ALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDK--QSRVFIVLQASLDMTIHLFTEANRMGLVGK 260 (550)
Q Consensus 192 ~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~--~~~~ii~~~~~~~~~~~il~~a~~~g~~~~ 260 (550)
.+++.| +.+... ..... . + ...++++.+. .++.|+ +.+...+..+++++++.|+.-+
T Consensus 147 ~l~~~g-~~~~~~-~~~~~-----~-~--~~~~~~~l~~~~~~~ai~--~~~d~~A~g~~~al~~~g~~vP 205 (277)
T 3hs3_A 147 EASKLK-IDYLLE-ETPEN-----N-P--YISAQSALNKSNQFDAII--TVNDLYAAEIIKEAKRRNLKIP 205 (277)
T ss_dssp HHHHTT-CEEEEE-ECCSS-----C-H--HHHHHHHHHTGGGCSEEE--CSSHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHCC-CCCCCC-CccCC-----c-h--HHHHHHHHcCCCCCCEEE--ECCHHHHHHHHHHHHHcCCCCC
Confidence 999999 877654 33221 1 1 3444444433 566655 5677788899999999998633
No 141
>2fqx_A Membrane lipoprotein TMPC; ABC transport system, ligand-binding protein, guanosine, TP0319, transport protein; HET: GMP; 1.70A {Treponema pallidum} PDB: 2fqw_A* 2fqy_A*
Probab=97.43 E-value=0.012 Score=55.74 Aligned_cols=207 Identities=15% Similarity=0.146 Sum_probs=113.3
Q ss_pred CcEEEEEEEec---CC-ccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEcCCChH
Q 008863 33 EVTKIGAIVDA---NS-QMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWE 108 (550)
Q Consensus 33 ~~i~IG~i~~~---~~-~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~ 108 (550)
++.+||+++|. +. .+......|++.+.++. |+.+.+. ++..+. ...+....+++ .++.+||......
T Consensus 3 ~~~~Ig~v~~~g~~~d~~f~~~~~~Gi~~~~~~~-----g~~~~~~--~~~~~~-~~~~~l~~l~~-~~~dgIi~~~~~~ 73 (318)
T 2fqx_A 3 GDFVVGMVTDSGDIDDKSFNQQVWEGISRFAQEN-----NAKCKYV--TASTDA-EYVPSLSAFAD-ENMGLVVACGSFL 73 (318)
T ss_dssp CCCEEEEEESSSCTTSSSHHHHHHHHHHHHHHHT-----TCEEEEE--ECCSGG-GHHHHHHHHHH-TTCSEEEEESTTT
T ss_pred CCcEEEEEEcCCCCCCccHHHHHHHHHHHHHHHh-----CCeEEEE--eCCCHH-HHHHHHHHHHH-cCCCEEEECChhH
Confidence 45799999972 22 34445556666666554 5665443 332222 23345556665 5788887642221
Q ss_pred HHHHHHHhhcc-CCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHH----HHHHHHcCC-eEEEEEEEcC-CCCC
Q 008863 109 ETAVVAEIASR-VQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCI----ADLARKYNW-RRVAAIYEDN-VYGG 181 (550)
Q Consensus 109 ~~~~v~~~~~~-~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al----~~~l~~~~w-~~v~ii~~~~-~~g~ 181 (550)
...+..++.. .++|++..... .+. . +.+-.+..+. .++..+ +.++...|. +++++|.... ...
T Consensus 74 -~~~~~~~a~~~p~~p~v~id~~--~~~--~---~~~~~v~~d~-~~~~~lag~~a~~l~~~Gh~r~Ig~i~g~~~~~~- 143 (318)
T 2fqx_A 74 -VEAVIETSARFPKQKFLVIDAV--VQD--R---DNVVSAVFGQ-NEGSFLVGVAAALKAKEAGKSAVGFIVGMELGMM- 143 (318)
T ss_dssp -HHHHHHHHHHCTTSCEEEESSC--CCS--C---TTEEEEEECH-HHHHHHHHHHHHHHHHHTTCCEEEEEESCCSTTT-
T ss_pred -HHHHHHHHHHCCCCEEEEEcCc--cCC--C---CCEEEEEech-HHHHHHHHHHHHHHhccCCCcEEEEEeCcccHHH-
Confidence 1224445544 38999887643 110 1 2232333433 333333 466766776 8999998653 222
Q ss_pred cchhHHHHHHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcCCCeEEEEEcCCHHHHHHHHHHHHHcCCCCCC
Q 008863 182 DSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGLVGKD 261 (550)
Q Consensus 182 ~~~~~~~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~~ii~~~~~~~~~~~il~~a~~~g~~~~~ 261 (550)
......+.+.+++.+ ..+.....+.... .+...-....+++.+.++++|+. .....+..+++++++.|+.+.+
T Consensus 144 -~~r~~Gf~~~~~~~~-~~~~~~~~~~~~~---~~~~~g~~~a~~ll~~~~daI~~--~~d~~a~Gv~~a~~e~g~~P~d 216 (318)
T 2fqx_A 144 -PLFEAGFEAGVKAVD-PDIQVVVEVANTF---SDPQKGQALAAKLYDSGVNVIFQ--VAGGTGNGVIKEARDRRLNGQD 216 (318)
T ss_dssp -HHHHHHHHHHHHHHC-TTCEEEEEECSCS---SCHHHHHHHHHHHHHTTCCEEEE--ECGGGHHHHHHHHHHHHHTTCC
T ss_pred -HHHHHHHHHHHHHHC-CCCEEEEEEccCc---cCHHHHHHHHHHHHHCCCcEEEE--CCCCCchHHHHHHHhhhhccCC
Confidence 556778888888776 5433222222110 01123334455555567887765 4455677788999998876333
Q ss_pred EEEEE
Q 008863 262 SVWIV 266 (550)
Q Consensus 262 ~~~i~ 266 (550)
+++.
T Consensus 217 -v~vi 220 (318)
T 2fqx_A 217 -VWVI 220 (318)
T ss_dssp -CEEE
T ss_pred -cEEE
Confidence 4443
No 142
>1jye_A Lactose operon repressor; gene regulation, protein stability, protein DNA-binding, transcription; 1.70A {Escherichia coli} SCOP: c.93.1.1 PDB: 1lbi_A 1lbg_A* 1lbh_A 1jyf_A 3edc_A 1efa_A* 1jwl_A* 2pe5_A* 1tlf_A* 2p9h_A* 2paf_A* 1cjg_A* 1l1m_A 1osl_A 2kei_A* 2kej_A* 2kek_A* 2bjc_A 1lqc_A 1lcc_A* ...
Probab=97.31 E-value=0.0094 Score=57.38 Aligned_cols=200 Identities=12% Similarity=0.043 Sum_probs=115.3
Q ss_pred CcEEEEEEEecC-CccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCC-HHHHHHHHHHhhhcCCeEEEE--cCCChH
Q 008863 33 EVTKIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRD-PFQAATAAQELINKEKVKVIA--GMETWE 108 (550)
Q Consensus 33 ~~i~IG~i~~~~-~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~-~~~a~~~~~~li~~~~v~aii--G~~~s~ 108 (550)
.+.+||+++|.- ...-.....+++.+.++. |+.+.+. +...+ +..-.+....++. .++.+|| ++....
T Consensus 60 ~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~-----g~~~~~~--~~~~~~~~~~~~~l~~l~~-~~vdGiIi~~~~~~~ 131 (349)
T 1jye_A 60 QSLLIGVATSSLALHAPSQIVAAILSRADQL-----GASVVVS--MVERSGVEACKTAVHNLLA-QRVSGLIINYPLDDQ 131 (349)
T ss_dssp --CEEEEEESCTTSHHHHHHHHHHHHHHHHT-----TCEEEEE--ECCSSSHHHHHHHHHHHHT-TTCSCEEEESCCCHH
T ss_pred CCCEEEEEeCCCCcccHHHHHHHHHHHHHHc-----CCEEEEE--eCCCCcHHHHHHHHHHHHH-CCCCEEEEecCCCCh
Confidence 567899999854 222234445555555442 6666553 33333 3333444555554 5776655 344332
Q ss_pred HHHHHHHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHHcCCeEEEEEEEcCCCCCcchhHHH
Q 008863 109 ETAVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLAL 188 (550)
Q Consensus 109 ~~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~~~w~~v~ii~~~~~~g~~~~~~~~ 188 (550)
. .+...+...++|+|..... .. ...+ .+..+....+...+++|...|.+++++|.............+.
T Consensus 132 ~--~~~~~~~~~~iPvV~i~~~--~~----~~~~---~V~~d~~~~~~~a~~~L~~~G~~~I~~i~g~~~~~~~~~R~~G 200 (349)
T 1jye_A 132 D--AIAVEAACTNVPALFLDVS--DQ----TPIN---SIIFSHEDGTRLGVEHLVALGHQQIALLAGPLSSVSARLRLAG 200 (349)
T ss_dssp H--HHHHHHHTTTSCEEESSSC--TT----SSSC---EEEECHHHHHHHHHHHHHHHTCCSEEEEECCTTSHHHHHHHHH
T ss_pred h--HHHHHHhhCCCCEEEEccc--CC----CCCC---EEEEchHHHHHHHHHHHHHCCCCEEEEEeCCCCCccHHHHHHH
Confidence 2 2223344578999987643 11 1223 3556777777888888877899999999865432101445677
Q ss_pred HHHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcC--CCeEEEEEcCCHHHHHHHHHHHHHcCCCCC
Q 008863 189 LAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDK--QSRVFIVLQASLDMTIHLFTEANRMGLVGK 260 (550)
Q Consensus 189 l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~--~~~~ii~~~~~~~~~~~il~~a~~~g~~~~ 260 (550)
|.+.+++.| +.+.... .... ...+-...+.++.+. .++.|+. .+...+..+++++++.|+.-+
T Consensus 201 f~~al~~~g-i~~~~~~-~~~~-----~~~~~~~~~~~ll~~~~~~~ai~~--~nD~~A~g~~~al~~~G~~vP 265 (349)
T 1jye_A 201 WHKYLTRNQ-IQPIAER-EGDW-----SAMSGFQQTMQMLNEGIVPTAMLV--ANDQMALGAMRAITESGLRVG 265 (349)
T ss_dssp HHHHHHHTT-CCCSEEE-ECCS-----SHHHHHHHHHHHHHTTCCCSEEEE--SSHHHHHHHHHHHHHTTCCBT
T ss_pred HHHHHHHcC-CCccccc-cCCC-----ChHHHHHHHHHHHhCCCCCCEEEE--CChHHHHHHHHHHHHcCCCCC
Confidence 888898888 7543221 1111 122223344444333 4677665 566778889999999998643
No 143
>3miz_A Putative transcriptional regulator protein, LACI family; LACL family, protein structure initiative II (PSI II), NYSGXRC, structural genomics; 1.91A {Rhizobium etli}
Probab=97.29 E-value=0.00028 Score=66.64 Aligned_cols=202 Identities=9% Similarity=0.103 Sum_probs=125.1
Q ss_pred CcEEEEEEEecCC-ccch-hHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEc-CCChHH
Q 008863 33 EVTKIGAIVDANS-QMGK-QAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAG-METWEE 109 (550)
Q Consensus 33 ~~i~IG~i~~~~~-~~g~-~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG-~~~s~~ 109 (550)
.+-+||+++|... ..-. ....+++.+.++. |+.+.+ .++..++....+....++. .++.+||- +.....
T Consensus 12 ~s~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~-----g~~~~~--~~~~~~~~~~~~~~~~l~~-~~vdGiIi~~~~~~~ 83 (301)
T 3miz_A 12 RSNTFGIITDYVSTTPYSVDIVRGIQDWANAN-----GKTILI--ANTGGSSEREVEIWKMFQS-HRIDGVLYVTMYRRI 83 (301)
T ss_dssp CCCEEEEEESSTTTCCSCHHHHHHHHHHHHHT-----TCEEEE--EECTTCHHHHHHHHHHHHH-TTCSEEEEEEEEEEE
T ss_pred CCCEEEEEeCCCcCcccHHHHHHHHHHHHHHC-----CCEEEE--EeCCCChHHHHHHHHHHHh-CCCCEEEEecCCccH
Confidence 5678999998752 2333 6778887777764 566654 5566677666666666665 57777663 222222
Q ss_pred HHHHHHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHHcCCeEEEEEEEcCCCCCcchhHHHH
Q 008863 110 TAVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALL 189 (550)
Q Consensus 110 ~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~~~w~~v~ii~~~~~~g~~~~~~~~l 189 (550)
....+...++|+|..... .+.. ...+ .+..+....+..++++|...|.+++++|.............+.+
T Consensus 84 ---~~~~~~~~~iPvV~~~~~--~~~~--~~~~---~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf 153 (301)
T 3miz_A 84 ---VDPESGDVSIPTVMINCR--PQTR--ELLP---SIEPDDYQGARDLTRYLLERGHRRIGYIRLNPILLGAELRLDAF 153 (301)
T ss_dssp ---CCCCCTTCCCCEEEEEEE--CSST--TSSC---EEEECHHHHHHHHHHHHHTTTCCSEEEEECCTTSHHHHHHHHHH
T ss_pred ---HHHHHHhCCCCEEEECCC--CCCC--CCCC---EEeeChHHHHHHHHHHHHHcCCCeEEEEecCccchhHHHHHHHH
Confidence 334456679999987754 2211 0223 45678888889999999989999999999765421114566778
Q ss_pred HHHHhcCCCeEEEEEeecCC---CCCCCCChHHH-HHHHHHhhcC--CCeEEEEEcCCHHHHHHHHHHHHHcCCC
Q 008863 190 AEALQNVSSSEIQSRLVLPP---ISSISDPKEAV-RGELKKVQDK--QSRVFIVLQASLDMTIHLFTEANRMGLV 258 (550)
Q Consensus 190 ~~~l~~~g~~~v~~~~~~~~---~~~~~~~~~d~-~~~l~~i~~~--~~~~ii~~~~~~~~~~~il~~a~~~g~~ 258 (550)
.+.+++.| +.+.....+.. .. .....+ ...++++.+. .++.|+. .+...+..+++++++.|+.
T Consensus 154 ~~al~~~g-~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~ai~~--~~d~~A~g~~~al~~~g~~ 222 (301)
T 3miz_A 154 RRTTSEFG-LTENDLSISLGMDGPV---GAENNYVFAAATEMLKQDDRPTAIMS--GNDEMAIQIYIAAMALGLR 222 (301)
T ss_dssp HHHHHHHT-CCGGGEEEEECEESST---TSCEECHHHHHHHHHTSTTCCSEEEE--SSHHHHHHHHHHHHTTTCC
T ss_pred HHHHHHcC-CCCCcceEEEcCCCCc---CccccHHHHHHHHHHcCCCCCcEEEE--CCHHHHHHHHHHHHHcCCC
Confidence 88888887 64322111111 10 011111 1334444333 5677665 5677788999999999985
No 144
>2hqb_A Transcriptional activator of COMK gene; berkeley structure genomics center target 1957B, structural genomics, PSI; 2.70A {Bacillus halodurans}
Probab=97.26 E-value=0.051 Score=50.82 Aligned_cols=196 Identities=12% Similarity=0.098 Sum_probs=112.3
Q ss_pred CcEEEEEEEec--CC-ccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEcCCChHH
Q 008863 33 EVTKIGAIVDA--NS-QMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEE 109 (550)
Q Consensus 33 ~~i~IG~i~~~--~~-~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~~ 109 (550)
++.+||+++|. +. .+......|++.+.++. |+.+. +.++..++....+....+++ .++.+||......
T Consensus 4 ~~~~Ig~v~~~~~~d~~f~~~~~~gi~~~~~~~-----g~~~~--~~~~~~~~~~~~~~l~~l~~-~~vdgIi~~~~~~- 74 (296)
T 2hqb_A 4 GGGMVGLLVEDTIDDQGWNRKAYEGLLNIHSNL-----DVDVV--LEEGVNSEQKAHRRIKELVD-GGVNLIFGHGHAF- 74 (296)
T ss_dssp --CEEEEECCCC----CCTHHHHHHHHHHHHHS-----CCEEE--EECCCCSHHHHHHHHHHHHH-TTCCEEEECSTHH-
T ss_pred CCcEEEEEECCCCCCCcHHHHHHHHHHHHHHHh-----CCeEE--EEeCCCCHHHHHHHHHHHHH-CCCCEEEEcCHhH-
Confidence 46799999973 22 45556667777766654 55553 44554554444455566665 6899998754332
Q ss_pred HHHHHHhhccC-CccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHH-cCCeEEEEEEEcCCCCCcchhHH
Q 008863 110 TAVVAEIASRV-QVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARK-YNWRRVAAIYEDNVYGGDSGKLA 187 (550)
Q Consensus 110 ~~~v~~~~~~~-~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~-~~w~~v~ii~~~~~~g~~~~~~~ 187 (550)
...+..++..+ ++|++..... .+. +.+-.+..+...-+.....++.+ .+-+++++|..... . . ..+
T Consensus 75 ~~~~~~~~~~~p~~p~v~id~~--~~~------~~~~~v~~d~~~g~~lag~la~~l~~~~~Ig~i~g~~~-~--~-r~~ 142 (296)
T 2hqb_A 75 AEYFSTIHNQYPDVHFVSFNGE--VKG------ENITSLHFEGYAMGYFGGMVAASMSETHKVGVIAAFPW-Q--P-EVE 142 (296)
T ss_dssp HHHHHTTTTSCTTSEEEEESCC--CCS------SSEEEEEECCHHHHHHHHHHHHHTCSSSEEEEEESCTT-C--H-HHH
T ss_pred HHHHHHHHHHCCCCEEEEEecC--cCC------CCEEEEEechHHHHHHHHHHHHhhccCCeEEEEcCcCc-h--h-hHH
Confidence 23345555544 7888886643 111 22333444444444434433444 35689999986533 2 3 678
Q ss_pred HHHHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcCCCeEEEEEcCCHHHHHHHHHHHHHcC
Q 008863 188 LLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMG 256 (550)
Q Consensus 188 ~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~~ii~~~~~~~~~~~il~~a~~~g 256 (550)
.+.+.+++.| .. .....+.... .+...-....+++.+.++++|+. .....+..+++++++.|
T Consensus 143 Gf~~~~~~~~-~~-~~~~~~~~~~---~~~~~g~~~a~~ll~~~~daI~~--~~D~~a~Gv~~a~~e~G 204 (296)
T 2hqb_A 143 GFVDGAKYMN-ES-EAFVRYVGEW---TDADKALELFQELQKEQVDVFYP--AGDGYHVPVVEAIKDQG 204 (296)
T ss_dssp HHHHHHHHTT-CC-EEEEEECSSS---SCHHHHHHHHHHHHTTTCCEEEC--CCTTTHHHHHHHHHHHT
T ss_pred HHHHHHHHhC-CC-eEEEEeeccc---cCHHHHHHHHHHHHHCCCcEEEE--CCCCCCHHHHHHHHHcC
Confidence 8889999888 64 3222222110 01123344555665567887664 55566677889999988
No 145
>3qi7_A Putative transcriptional regulator; periplasmic binding protein-like, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.86A {Clostridium difficile}
Probab=97.23 E-value=0.035 Score=52.77 Aligned_cols=213 Identities=10% Similarity=0.094 Sum_probs=129.5
Q ss_pred CcEEEEEEEecCCccchhHHHHHHHHHHHHhcCC--------CCcEEEEEEecCCCCH-----HHHHHHHHHhhhcCCeE
Q 008863 33 EVTKIGAIVDANSQMGKQAITAMKIAVQNFNSDS--------RNHKLSLQIRDHNRDP-----FQAATAAQELINKEKVK 99 (550)
Q Consensus 33 ~~i~IG~i~~~~~~~g~~~~~a~~~Av~~iN~~~--------~~~~l~~~~~d~~~~~-----~~a~~~~~~li~~~~v~ 99 (550)
.+.+||++.+.- +.+....++++..+++.|..+ ....+.+++..+-.|+ ..+++...++..+.++.
T Consensus 11 ~~~~igi~t~t~-s~se~t~~~a~~~i~~yg~~pn~~~l~~~~s~~iG~I~~~~~pd~F~se~~ttI~~I~~~a~~~gyk 89 (371)
T 3qi7_A 11 DDFKVAVVTQPL-SENKVQYNMVEEMAKEYEEENKIDKDKDGQTKVKQTIKHVVLPENFTSNIDSAINKIVKLADDKEVQ 89 (371)
T ss_dssp CCEEEEEEECCT-TTCHHHHHHHHHHHHHHHHHTTCCC-----CCCCEEEEEEECCTTGGGGHHHHHHHHHGGGGCTTEE
T ss_pred CCeEEEEEcCCc-CCCHHHHHHHHHHHHHhCCCcccchhcccccccceEEEEeccCCCchHHHHHHHHHHHHHhhcCCCe
Confidence 469999998654 345678899999999988742 1123334444333333 34577788888888899
Q ss_pred EEEcCCChHHHHHHHHhhccCCccEEeccCCCC-CCcc-cCCCCCeEEEEecCcHHhHHHHHHHHHHcCCeEEEEEEEcC
Q 008863 100 VIAGMETWEETAVVAEIASRVQVPILSFAAPAV-TPLS-MSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDN 177 (550)
Q Consensus 100 aiiG~~~s~~~~~v~~~~~~~~iP~is~~~~~~-~~~~-~~~~~~~~~~~~p~~~~~~~al~~~l~~~~w~~v~ii~~~~ 177 (550)
+|+..............+.+.+++.|-...... ++.. ... ..+ .+..++..-+...+++|...|.+++++|....
T Consensus 90 ~II~n~~~~~~~~~i~~lkekrvDgIIi~~~~~ed~~~i~~~--~di-~V~~Dn~~Ggy~A~~~Li~~Ghk~Ia~Isgp~ 166 (371)
T 3qi7_A 90 AIVVSTDQAGLLPALQKVKEKRPEIITISAPMGDDKNQLSQF--VDV-NLGVSAEERGKVLAERSKEMGAKAFIHYASTD 166 (371)
T ss_dssp EEEEECSSCCCHHHHHHHHHHCTTSEEEESSCCSCHHHHHHH--SSE-EEECCHHHHHHHHHHHHHHTTCSCEEEEEETT
T ss_pred EEEEECCCcchHHHHHHHHhcCCCEEEEeccccccchhhccc--Cce-EEEeChHHHHHHHHHHHHHCCCCEEEEEeccc
Confidence 888754332223334455655666544333200 1111 111 112 56777777788888999999999999999754
Q ss_pred CCCC--cchhHHHHHHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHh---------hc-CCCeEEEEEcCCHHHH
Q 008863 178 VYGG--DSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKV---------QD-KQSRVFIVLQASLDMT 245 (550)
Q Consensus 178 ~~g~--~~~~~~~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i---------~~-~~~~~ii~~~~~~~~~ 245 (550)
.... .....+.+++++++.| +...... .+... .+..+ ...+++ .+ ...+.|+ +++...+
T Consensus 167 ~~~~~~~~~R~~Gyk~Al~e~G-i~~~~~~-~~d~t----~e~G~-~~a~~lL~~~~~~~~~~~~~~TAIF--atND~mA 237 (371)
T 3qi7_A 167 DLKDVNIAKRLEMIKETCKNIG-LPFVQVN-TPNIN----TEEDK-NKVKQFLNEDIEKQVKKYGKDINVF--GVNEYMD 237 (371)
T ss_dssp GGGSHHHHHHHHHHHHHHHHTT-CCEEEEE-ECCCS----STHHH-HHHHHHHHHHHHHHHHHHCSCCEEE--ESSHHHH
T ss_pred cccchhHHHHHHHHHHHHHHcC-CCceeec-CCCCc----hHHHH-HHHHHHHhccccchhhccCCCcEEE--ECCHHHH
Confidence 3110 0235677999999999 8765543 22111 22222 222221 12 2335555 5888999
Q ss_pred HHHHHHHHHcCCC
Q 008863 246 IHLFTEANRMGLV 258 (550)
Q Consensus 246 ~~il~~a~~~g~~ 258 (550)
..+++++.+.|+.
T Consensus 238 iG~ikal~e~Gi~ 250 (371)
T 3qi7_A 238 EVILTKALELKYI 250 (371)
T ss_dssp HHHHHHHHHHCCB
T ss_pred HHHHHHHHHcCCc
Confidence 9999999999974
No 146
>3h5t_A Transcriptional regulator, LACI family; DNA-dependent, protein structure initiative II(PSI II), NYSGXRC, 11232D), structural genomics; 2.53A {Corynebacterium glutamicum}
Probab=96.68 E-value=0.0063 Score=59.05 Aligned_cols=204 Identities=9% Similarity=0.067 Sum_probs=114.4
Q ss_pred CcEEEEEEEecCCc--cchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEc-CCChHH
Q 008863 33 EVTKIGAIVDANSQ--MGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAG-METWEE 109 (550)
Q Consensus 33 ~~i~IG~i~~~~~~--~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG-~~~s~~ 109 (550)
.+-+||+++|.... ........+..++++.=. |+.+.+...+...+. .-.+....++ ..++.+||- +... .
T Consensus 67 ~s~~Igvi~~~~~~~~~~~~~~~~~~~gi~~~a~---g~~~~~~~~~~~~~~-~~~~~~~~l~-~~~vdGiIi~~~~~-~ 140 (366)
T 3h5t_A 67 RAGAIGVLLTEDLTYAFEDMASVDFLAGVAQAAG---DTQLTLIPASPASSV-DHVSAQQLVN-NAAVDGVVIYSVAK-G 140 (366)
T ss_dssp -CCEEEEEESSCTTHHHHSHHHHHHHHHHHHHSS---SCEEEEEECCCCTTC-CHHHHHHHHH-TCCCSCEEEESCCT-T
T ss_pred CCCEEEEEecCCccccccCHHHHHHHHHHHHHHh---hCCEEEEEcCCCccH-HHHHHHHHHH-hCCCCEEEEecCCC-C
Confidence 56789999987421 112333333333433221 667776655433221 1222333344 356666553 2211 1
Q ss_pred HHHHHHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHHcCCeEEEEEEEc-------------
Q 008863 110 TAVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYED------------- 176 (550)
Q Consensus 110 ~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~~~w~~v~ii~~~------------- 176 (550)
. .....+...++|+|..... .+ ....+ .+..+....+...+++|...|.+++++|...
T Consensus 141 ~-~~~~~l~~~~iPvV~i~~~--~~---~~~~~---~V~~D~~~~~~~a~~~L~~~G~r~I~~i~~~~~~~~~~g~~~~~ 211 (366)
T 3h5t_A 141 D-PHIDAIRARGLPAVIADQP--AR---EEGMP---FIAPNNRKAIAPAAQALIDAGHRKIGILSIRLDRANNDGEVTRE 211 (366)
T ss_dssp C-HHHHHHHHHTCCEEEESSC--CS---CTTCC---EEEECHHHHTHHHHHHHHHTTCCSEEEEEECCSSSCCCEECCHH
T ss_pred h-HHHHHHHHCCCCEEEECCc--cC---CCCCC---EEEeChHHHHHHHHHHHHHCCCCcEEEEecccccccccCccccc
Confidence 1 2233445669999987654 21 12223 3567888888899999999999999999832
Q ss_pred ------CCCCCcchhHHHHHHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhc--CCCeEEEEEcCCHHHHHHH
Q 008863 177 ------NVYGGDSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQD--KQSRVFIVLQASLDMTIHL 248 (550)
Q Consensus 177 ------~~~g~~~~~~~~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~--~~~~~ii~~~~~~~~~~~i 248 (550)
.... ....+.+.+.+++.| +.+.....+.... ....+-...++++.+ ..++.|+. .+...+..+
T Consensus 212 ~~~~~~~~~~--~~R~~Gf~~al~~~g-~~~~~~~~~~~~~---~~~~~~~~~~~~ll~~~~~~~ai~~--~nD~~A~g~ 283 (366)
T 3h5t_A 212 RLENAQYQVQ--RDRVRGAMEVFIEAG-IDPGTVPIMECWI---NNRQHNFEVAKELLETHPDLTAVLC--TVDALAFGV 283 (366)
T ss_dssp HHHTCCCTTH--HHHHHHHHHHHHHHT-CCGGGSCEEEESS---CCHHHHHHHHHHHHHHCTTCCEEEE--SSHHHHHHH
T ss_pred cccccccchH--HHHHHHHHHHHHHCC-CCCCcceEEEcCC---CCHHHHHHHHHHHHcCCCCCcEEEE--CCcHHHHHH
Confidence 1222 456678888898888 6532111111000 022333344444433 25677665 667788889
Q ss_pred HHHHHHcCCCC
Q 008863 249 FTEANRMGLVG 259 (550)
Q Consensus 249 l~~a~~~g~~~ 259 (550)
++++++.|+.-
T Consensus 284 ~~al~~~G~~v 294 (366)
T 3h5t_A 284 LEYLKSVGKSA 294 (366)
T ss_dssp HHHHHHTTCCT
T ss_pred HHHHHHcCCCC
Confidence 99999999864
No 147
>2ozz_A Hypothetical protein YHFZ; alpha-beta structure, structural genomics, PSI-2, protein structure initiative; 2.30A {Shigella flexneri 2A} SCOP: c.94.1.1
Probab=95.88 E-value=0.0033 Score=55.70 Aligned_cols=56 Identities=11% Similarity=0.014 Sum_probs=48.1
Q ss_pred ccccchHHHHHHHHHhCCCCCCeEEEecCCChHHHHHhhhcccccEEeeceeeeee------eeeEEE
Q 008863 486 RYDGFSIELFRLVVDHLNYDLPYEFVPHDGVYDDLINGVYDKVNYFNYHDKLLFKK------KKRLCL 547 (550)
Q Consensus 486 ~~~GfciDll~~la~~l~f~~~~~~~~~~g~w~Gmi~el~~~~ad~a~~~~ti~~~------r~~~~~ 547 (550)
+|||+.--|-+.+. |++ +++... ..|++.|.-|.+|++|+||++++.+.| |++++.
T Consensus 29 ~yeGlatgl~~~f~---gi~--~~i~~m-rg~~~RI~aL~~gk~D~aI~S~~aa~e~~~~~~r~~~vd 90 (231)
T 2ozz_A 29 LYEGLASGLKAQFD---GIP--FYYAHM-RGADIRVECLLNGVYDMAVVSRLAAESYLSQNNLCIALE 90 (231)
T ss_dssp HHHHHHHHHHHTTT---TSC--EEEEEC-SCHHHHHHHHHTTSCSEEEEEHHHHHHHHHHSCEEEEEE
T ss_pred hhhHHHHHHHHHhc---CCc--EEEEEc-cChHHHHHHHHcCCCCEEEEecccchhhhcccCeEEEEE
Confidence 89999988888773 666 556554 259999999999999999999999999 999885
No 148
>3ixl_A Amdase, arylmalonate decarboxylase; enantioselective decarboxylation, lyase; HET: CME PAC; 1.45A {Bordetella bronchiseptica} PDB: 3ixm_A 2vlb_A 3dg9_A 3ip8_A* 3dtv_A* 3eis_A*
Probab=95.34 E-value=0.23 Score=44.54 Aligned_cols=130 Identities=17% Similarity=0.074 Sum_probs=84.4
Q ss_pred HHHhhhcCCeEEEEcCCChHHH--------HHHHHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHH
Q 008863 89 AQELINKEKVKVIAGMETWEET--------AVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIAD 160 (550)
Q Consensus 89 ~~~li~~~~v~aiiG~~~s~~~--------~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~ 160 (550)
+.+|. +.++.+|+-+-++... .....+.+..++|+++ ...++++
T Consensus 59 a~~L~-~ag~d~i~~aCtsas~~~G~~~~~~~~~~l~~~~~iPv~~---------------------------~~~A~~~ 110 (240)
T 3ixl_A 59 ARRLQ-KQGAAVVSLMCTSLSFYRGAAFNAALTVAMREATGLPCTT---------------------------MSTAVLN 110 (240)
T ss_dssp HHHHH-HTTEEEEEECCHHHHHTTCHHHHHHHHHHHHHHHSSCEEE---------------------------HHHHHHH
T ss_pred HHHhc-cCCCCEEEECCcHHHHhcccchHHHHHHHHHhccCCCEEC---------------------------HHHHHHH
Confidence 34444 4689888865333332 2334455566788776 3467778
Q ss_pred HHHHcCCeEEEEEEEcCCCCCcchhHHHHHHHHhcCCCeEEEEEeecCCCC---CCCCChHHHHHHHHH-h-hcCCCeEE
Q 008863 161 LARKYNWRRVAAIYEDNVYGGDSGKLALLAEALQNVSSSEIQSRLVLPPIS---SISDPKEAVRGELKK-V-QDKQSRVF 235 (550)
Q Consensus 161 ~l~~~~w~~v~ii~~~~~~g~~~~~~~~l~~~l~~~g~~~v~~~~~~~~~~---~~~~~~~d~~~~l~~-i-~~~~~~~i 235 (550)
.++..|-++|+++.. |. ....+.+++.+.+.| +++.......... ....+...+.+.+++ + ...+++.|
T Consensus 111 al~~~g~~rvglltp---y~--~~~~~~~~~~l~~~G-iev~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~adai 184 (240)
T 3ixl_A 111 GLRALGVRRVALATA---YI--DDVNERLAAFLAEES-LVPTGCRSLGITGVEAMARVDTATLVDLCVRAFEAAPDSDGI 184 (240)
T ss_dssp HHHHTTCSEEEEEES---SC--HHHHHHHHHHHHHTT-CEEEEEEECCCCCHHHHHTCCHHHHHHHHHHHHHTSTTCSEE
T ss_pred HHHHhCCCEEEEEeC---Ch--HHHHHHHHHHHHHCC-CEEeccccCCCCCcchhhcCCHHHHHHHHHHHhhcCCCCCEE
Confidence 888889999999975 65 666788899999999 9877654332211 001133467777888 7 66799999
Q ss_pred EEEcCCHHHHHHHHHHHH
Q 008863 236 IVLQASLDMTIHLFTEAN 253 (550)
Q Consensus 236 i~~~~~~~~~~~il~~a~ 253 (550)
|+ .|..-....++....
T Consensus 185 vL-~CT~l~~l~~i~~le 201 (240)
T 3ixl_A 185 LL-SSGGLLTLDAIPEVE 201 (240)
T ss_dssp EE-ECTTSCCTTHHHHHH
T ss_pred EE-eCCCCchhhhHHHHH
Confidence 99 776654444444443
No 149
>3s99_A Basic membrane lipoprotein; ssgcid, structural genomics, SEA structural genomics center for infectious disease, adenine; HET: ADE; 2.05A {Brucella melitensis biovar abortus}
Probab=92.16 E-value=2.5 Score=40.21 Aligned_cols=90 Identities=19% Similarity=0.184 Sum_probs=68.2
Q ss_pred cEEEEEEEecCCccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEcCCChHHHHHH
Q 008863 34 VTKIGAIVDANSQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEETAVV 113 (550)
Q Consensus 34 ~i~IG~i~~~~~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~~~~~v 113 (550)
+=+||.+.............||..+++.+| +..++.+.+..+-.|+..+.+.+.+|+. +++.+|+...... .+
T Consensus 149 ~~kIGfVgg~~~p~v~~~~~GF~~G~k~~n---p~i~v~~~~~g~~~d~~kg~~~a~~l~~-~G~DvIf~~~d~~---Gv 221 (356)
T 3s99_A 149 KGIAGYIGSVPVPEVVQGINSFMLGAQSVN---PDFRVKVIWVNSWFDPGKEADAAKALID-QGVDIITQHTDST---AA 221 (356)
T ss_dssp SCEEEEEECCCCHHHHHHHHHHHHHHHTTC---TTCEEEEEECSSSCCHHHHHHHHHHHHH-TTCSEEEESSSSS---HH
T ss_pred CCEEEEECCCccHHHHHHHHHHHHHHHHHC---CCCEEEEEECCCCCChHHHHHHHHHHHh-CCCcEEEECCCch---HH
Confidence 347899887654333456789999999887 5678877776666899999999999997 5999999765543 34
Q ss_pred HHhhccCCccEEeccCC
Q 008863 114 AEIASRVQVPILSFAAP 130 (550)
Q Consensus 114 ~~~~~~~~iP~is~~~~ 130 (550)
...+.+.++..|.+...
T Consensus 222 ~~aa~e~Gv~vIG~D~d 238 (356)
T 3s99_A 222 IQVAHDRGIKAFGQASD 238 (356)
T ss_dssp HHHHHHTTCEEEEEESC
T ss_pred HHHHHHcCCEEEEEcCc
Confidence 55667789988887765
No 150
>2xed_A Putative maleate isomerase; nicotinic acid catabolism, cofactor-independent CIS-trans isomerase; 1.95A {Nocardia farcinica} PDB: 2xec_A
Probab=91.35 E-value=2.9 Score=38.06 Aligned_cols=90 Identities=16% Similarity=0.116 Sum_probs=56.9
Q ss_pred HHHHHHHHHcCCeEEEEEEEcCCCCCcchhHHHHHHHHhcCCCeEEEEEeecCCCCC---CCCChHHHHHHHHHhhcCCC
Q 008863 156 KCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLAEALQNVSSSEIQSRLVLPPISS---ISDPKEAVRGELKKVQDKQS 232 (550)
Q Consensus 156 ~al~~~l~~~~w~~v~ii~~~~~~g~~~~~~~~l~~~l~~~g~~~v~~~~~~~~~~~---~~~~~~d~~~~l~~i~~~~~ 232 (550)
.++++.++..+-++|+++. .|. ....+.+.+.+.+.| +++........... -......+.+.++++...++
T Consensus 135 ~A~~~al~~~g~~rvgvlt---p~~--~~~~~~~~~~l~~~G-i~v~~~~~~~~~~~~~~g~~~~~~l~~~~~~l~~~ga 208 (273)
T 2xed_A 135 GALVEGLRALDAQRVALVT---PYM--RPLAEKVVAYLEAEG-FTISDWRALEVADNTEVGCIPGEQVMAAARSLDLSEV 208 (273)
T ss_dssp HHHHHHHHHTTCCEEEEEE---CSC--HHHHHHHHHHHHHTT-CEEEEEEECCCCBHHHHHTCCHHHHHHHHHHSCCTTC
T ss_pred HHHHHHHHHcCCCeEEEEc---CCh--hhhHHHHHHHHHHCC-CEEeccccCCCccchhhcccCHHHHHHHHHHHhhCCC
Confidence 4555566667889999996 344 445568888899899 88765443322100 00123456777788877799
Q ss_pred eEEEEEc-CCHHHHHHHHHHH
Q 008863 233 RVFIVLQ-ASLDMTIHLFTEA 252 (550)
Q Consensus 233 ~~ii~~~-~~~~~~~~il~~a 252 (550)
+.||+ . |..-....+..+.
T Consensus 209 daIvL-g~CT~l~~~~~~~~l 228 (273)
T 2xed_A 209 DALVI-SCAVQMPSLPLVETA 228 (273)
T ss_dssp SEEEE-ESSSSSCCTTHHHHH
T ss_pred CEEEE-cCCCCcchHHhHHHH
Confidence 99999 7 7655443344443
No 151
>2fqx_A Membrane lipoprotein TMPC; ABC transport system, ligand-binding protein, guanosine, TP0319, transport protein; HET: GMP; 1.70A {Treponema pallidum} PDB: 2fqw_A* 2fqy_A*
Probab=91.19 E-value=6.2 Score=36.78 Aligned_cols=125 Identities=15% Similarity=0.139 Sum_probs=80.6
Q ss_pred EEEEEEecCCccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEcCCChHHHHHHHH
Q 008863 36 KIGAIVDANSQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEETAVVAE 115 (550)
Q Consensus 36 ~IG~i~~~~~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~~~~~v~~ 115 (550)
+||.+..........-..|++.++++.|- ..++.+.+..+-.++..+.+.+.+++. .++.+|+...... +..+..
T Consensus 131 ~Ig~i~g~~~~~~~~r~~Gf~~~~~~~~~---~~~~~~~~~~~~~~~~~g~~~a~~ll~-~~~daI~~~~d~~-a~Gv~~ 205 (318)
T 2fqx_A 131 AVGFIVGMELGMMPLFEAGFEAGVKAVDP---DIQVVVEVANTFSDPQKGQALAAKLYD-SGVNVIFQVAGGT-GNGVIK 205 (318)
T ss_dssp EEEEEESCCSTTTHHHHHHHHHHHHHHCT---TCEEEEEECSCSSCHHHHHHHHHHHHH-TTCCEEEEECGGG-HHHHHH
T ss_pred EEEEEeCcccHHHHHHHHHHHHHHHHHCC---CCEEEEEEccCccCHHHHHHHHHHHHH-CCCcEEEECCCCC-chHHHH
Confidence 78888765433345667999999998863 455555444444577888889999997 5799999754433 333333
Q ss_pred hhcc-----CCccEEeccCCCCCCcccC-C---CCCeEEEEecCcHHhHHHHHHHHHHcCCe
Q 008863 116 IASR-----VQVPILSFAAPAVTPLSMS-R---RWPYLIRMASNDSEQMKCIADLARKYNWR 168 (550)
Q Consensus 116 ~~~~-----~~iP~is~~~~~~~~~~~~-~---~~~~~~~~~p~~~~~~~al~~~l~~~~w~ 168 (550)
.+.+ .++.+|.+... +.... - ..|.+-.+..+....+...++.+..-.|+
T Consensus 206 a~~e~g~~P~dv~viG~D~~---~~~~~~~~~~~~~~LTsv~~~~~~~~~~a~~~~~~g~~~ 264 (318)
T 2fqx_A 206 EARDRRLNGQDVWVIGVDRD---QYMDGVYDGSKSVVLTSMVKRADVAAERISKMAYDGSFP 264 (318)
T ss_dssp HHHHHHHTTCCCEEEEEESC---CGGGGBCSSSCBSEEEEEEECHHHHHHHHHHHHHHTCCC
T ss_pred HHHhhhhccCCcEEEEEecc---hhhhccccCCCCeEEEEEEEEHHHHHHHHHHHHHcCCCC
Confidence 3444 67888887765 22111 0 34667777777777777777777665554
No 152
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=89.47 E-value=5 Score=29.58 Aligned_cols=99 Identities=18% Similarity=0.294 Sum_probs=66.8
Q ss_pred EEEEecCcHHhHHHHHHHHHHcCCeEEEEEEEcCCCCCcchhHHHHHHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHH
Q 008863 144 LIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGE 223 (550)
Q Consensus 144 ~~~~~p~~~~~~~al~~~l~~~~w~~v~ii~~~~~~g~~~~~~~~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~ 223 (550)
+|-+..++.....-++.-+++.| -++.++|++.+ ......-.+.+++.| +.+...+ +..||+..
T Consensus 4 ifvvfssdpeilkeivreikrqg-vrvvllysdqd----ekrrrerleefekqg-vdvrtve----------dkedfren 67 (162)
T 2l82_A 4 IFVVFSSDPEILKEIVREIKRQG-VRVVLLYSDQD----EKRRRERLEEFEKQG-VDVRTVE----------DKEDFREN 67 (162)
T ss_dssp EEEEEESCHHHHHHHHHHHHHTT-CEEEEEECCSC----HHHHHHHHHHHHTTT-CEEEECC----------SHHHHHHH
T ss_pred EEEEecCCHHHHHHHHHHHHhCC-eEEEEEecCch----HHHHHHHHHHHHHcC-Cceeeec----------cHHHHHHH
Confidence 44555667777777888888877 56788888766 333444455678888 7664322 55788888
Q ss_pred HHHhhcC--CCeEEEEE-cCCHHHHHHHHHHHHHcCCC
Q 008863 224 LKKVQDK--QSRVFIVL-QASLDMTIHLFTEANRMGLV 258 (550)
Q Consensus 224 l~~i~~~--~~~~ii~~-~~~~~~~~~il~~a~~~g~~ 258 (550)
+++|-.. .-+++++. ..+.+-...|+..|++.|.-
T Consensus 68 ireiwerypqldvvvivttddkewikdfieeakergve 105 (162)
T 2l82_A 68 IREIWERYPQLDVVVIVTTDDKEWIKDFIEEAKERGVE 105 (162)
T ss_dssp HHHHHHHCTTCCEEEEEECCCHHHHHHHHHHHHHTTCE
T ss_pred HHHHHHhCCCCcEEEEEecCcHHHHHHHHHHHHhcCcE
Confidence 8877543 44444441 44556778899999999873
No 153
>2hqb_A Transcriptional activator of COMK gene; berkeley structure genomics center target 1957B, structural genomics, PSI; 2.70A {Bacillus halodurans}
Probab=87.52 E-value=9.1 Score=35.18 Aligned_cols=122 Identities=14% Similarity=0.037 Sum_probs=76.9
Q ss_pred EEEEEEEecCCccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEcCCChHHHHHHH
Q 008863 35 TKIGAIVDANSQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEETAVVA 114 (550)
Q Consensus 35 i~IG~i~~~~~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~~~~~v~ 114 (550)
=+||.+...... . -..|++.++++.| +. ++.+....+..++..+.+.+.+++. .++.+|+..... .+..+.
T Consensus 127 ~~Ig~i~g~~~~--~-r~~Gf~~~~~~~~---~~-~~~~~~~~~~~~~~~g~~~a~~ll~-~~~daI~~~~D~-~a~Gv~ 197 (296)
T 2hqb_A 127 HKVGVIAAFPWQ--P-EVEGFVDGAKYMN---ES-EAFVRYVGEWTDADKALELFQELQK-EQVDVFYPAGDG-YHVPVV 197 (296)
T ss_dssp SEEEEEESCTTC--H-HHHHHHHHHHHTT---CC-EEEEEECSSSSCHHHHHHHHHHHHT-TTCCEEECCCTT-THHHHH
T ss_pred CeEEEEcCcCch--h-hHHHHHHHHHHhC---CC-eEEEEeeccccCHHHHHHHHHHHHH-CCCcEEEECCCC-CCHHHH
Confidence 378888765422 1 6689999998876 34 5544443344577788888999997 589999976544 333444
Q ss_pred HhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHHcCCeE
Q 008863 115 EIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRR 169 (550)
Q Consensus 115 ~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~~~w~~ 169 (550)
..+.+.++.+|.+... .. .....|.+-.+..+....+...++.+..-.|+.
T Consensus 198 ~a~~e~Gv~viG~D~~---~~-~~~~~~~LTsv~~~~~~~~~~a~~~~~~g~~~~ 248 (296)
T 2hqb_A 198 EAIKDQGDFAIGYVGD---QA-DLGGSTILTSTVQHVDDLYVLVAKRFQEGKLES 248 (296)
T ss_dssp HHHHHHTCEEEEEESC---CS-SSSCSSEEEEEEECHHHHHHHHHHHTTTTCCCC
T ss_pred HHHHHcCCEEEEEecc---hh-hhCCCeEEEEEEEEhHHHHHHHHHHHHcCCCCC
Confidence 5566678888887653 11 111235666666666666666666655545653
No 154
>3p7i_A PHND, subunit of alkylphosphonate ABC transporter; phosphonate binding protein, transport protein; 1.71A {Escherichia coli UTI89} PDB: 3qk6_A 3quj_A* 3s4u_A
Probab=87.44 E-value=0.21 Score=47.09 Aligned_cols=49 Identities=8% Similarity=0.038 Sum_probs=40.4
Q ss_pred HHHHHHHHHhCCCCCCeEEEecCCChHHHHHhhhcccccEEee-ceeeeeeee
Q 008863 492 IELFRLVVDHLNYDLPYEFVPHDGVYDDLINGVYDKVNYFNYH-DKLLFKKKK 543 (550)
Q Consensus 492 iDll~~la~~l~f~~~~~~~~~~g~w~Gmi~el~~~~ad~a~~-~~ti~~~r~ 543 (550)
-+|+++|++.+|.+ +++++. ..|++++..|..|++|++++ +.+++..|+
T Consensus 34 ~~l~~~L~k~lG~~--ve~~~~-~~~~~~i~aL~~G~vDia~~~~~~~~~~~~ 83 (321)
T 3p7i_A 34 TPFLQDMEKKLGVK--VNAFFA-PDYAGIIQGMRFNKVDIAWYGNLSAMEAVD 83 (321)
T ss_dssp HHHHHHHHHHHTSC--EEEECC-SSHHHHHHHHHTTSCSEEECCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCC--EEEEec-CCHHHHHHHHHcCCCcEEEEChHHHHHHHH
Confidence 48999999999988 777653 47999999999999999975 567666543
No 155
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=87.28 E-value=13 Score=31.73 Aligned_cols=160 Identities=16% Similarity=0.196 Sum_probs=101.4
Q ss_pred cEEEEEEEecCCccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEcCCChHHHHHH
Q 008863 34 VTKIGAIVDANSQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEETAVV 113 (550)
Q Consensus 34 ~i~IG~i~~~~~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~~~~~v 113 (550)
..+|.++.|.. ....-++-...+.+ ..+.+ ++ .+-.+++..+.++ . +++.+||.- ..++..+
T Consensus 4 ~~~I~~iapy~-----~l~~~~~~i~~e~~-----~~i~i--~~--~~l~~~v~~a~~~-~-~~~dVIISR--Ggta~~l 65 (196)
T 2q5c_A 4 SLKIALISQNE-----NLLNLFPKLALEKN-----FIPIT--KT--ASLTRASKIAFGL-Q-DEVDAIISR--GATSDYI 65 (196)
T ss_dssp CCEEEEEESCH-----HHHHHHHHHHHHHT-----CEEEE--EE--CCHHHHHHHHHHH-T-TTCSEEEEE--HHHHHHH
T ss_pred CCcEEEEEccH-----HHHHHHHHHHhhhC-----CceEE--EE--CCHHHHHHHHHHh-c-CCCeEEEEC--ChHHHHH
Confidence 36899999875 33344444444443 24443 33 2356788888888 5 799999953 2233333
Q ss_pred HHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHHcCCeEEEEEEEcCCCCCcchhHHHHHHHH
Q 008863 114 AEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLAEAL 193 (550)
Q Consensus 114 ~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~~~w~~v~ii~~~~~~g~~~~~~~~l~~~l 193 (550)
. +..++|+|....+ ..+..+++...-++ + ++++++...+.. ...+.+.+.+
T Consensus 66 r---~~~~iPVV~I~~s--------------------~~Dil~al~~a~~~-~-~kIavvg~~~~~----~~~~~~~~ll 116 (196)
T 2q5c_A 66 K---KSVSIPSISIKVT--------------------RFDTMRAVYNAKRF-G-NELALIAYKHSI----VDKHEIEAML 116 (196)
T ss_dssp H---TTCSSCEEEECCC--------------------HHHHHHHHHHHGGG-C-SEEEEEEESSCS----SCHHHHHHHH
T ss_pred H---HhCCCCEEEEcCC--------------------HhHHHHHHHHHHhh-C-CcEEEEeCcchh----hHHHHHHHHh
Confidence 3 4568999886544 33455666655443 3 489998887652 2356677766
Q ss_pred hcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcCCCeEEEEEcCCHHHHHHHHHHHHHcCCCC
Q 008863 194 QNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGLVG 259 (550)
Q Consensus 194 ~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~~ii~~~~~~~~~~~il~~a~~~g~~~ 259 (550)
. ..+.... +. +.++....++++++.+.++|+- +. ...+.|++.|+.+
T Consensus 117 ~----~~i~~~~-~~-------~~~e~~~~i~~l~~~G~~vvVG-~~------~~~~~A~~~Gl~~ 163 (196)
T 2q5c_A 117 G----VKIKEFL-FS-------SEDEITTLISKVKTENIKIVVS-GK------TVTDEAIKQGLYG 163 (196)
T ss_dssp T----CEEEEEE-EC-------SGGGHHHHHHHHHHTTCCEEEE-CH------HHHHHHHHTTCEE
T ss_pred C----CceEEEE-eC-------CHHHHHHHHHHHHHCCCeEEEC-CH------HHHHHHHHcCCcE
Confidence 5 4554433 22 3468889999999999999887 43 2366788999864
No 156
>2eq5_A 228AA long hypothetical hydantoin racemase; structural genomics, NPPSFA, national project on P structural and functional analyses; 2.20A {Pyrococcus horikoshii}
Probab=86.63 E-value=6.1 Score=34.74 Aligned_cols=176 Identities=16% Similarity=0.178 Sum_probs=86.9
Q ss_pred cEEEEEEEecCCccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCC----CHH-------HHHHHHHHhhhcCCeEEEE
Q 008863 34 VTKIGAIVDANSQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNR----DPF-------QAATAAQELINKEKVKVIA 102 (550)
Q Consensus 34 ~i~IG~i~~~~~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~----~~~-------~a~~~~~~li~~~~v~aii 102 (550)
..+||+|.|.++.. ..+ .++...++....|+..+.+.-..... +.. ...+.+..+ .+.++.+|+
T Consensus 6 ~~~ig~i~p~~~~~--~~e--~~~~~~~~~~~~p~~~i~~~~~p~g~~~~~~~~~~~~~~~~l~~~~~~l-~~~g~d~iv 80 (228)
T 2eq5_A 6 KYTIGLIRVITLED--KEI--LNLHGRIIESAFPELKVVSRCIEDQPKGIYNEETEREAEPKIIRLAKEF-EREGVDAII 80 (228)
T ss_dssp CEEEEEEESSCCCC--HHH--HTHHHHHHHHHCTTEEEEEEECSSCTTCCSSHHHHHHHHHHHHHHHHHH-HHTTCSEEE
T ss_pred ceEEEEEeccCccC--HHH--HHHHHHHHHhhCCCCeEEEEeCCCCchhccccccHHHhHHHHHHHHHHH-HHCCCCEEE
Confidence 57899999987211 111 11222223222356666664332211 111 111223334 346787777
Q ss_pred cCCChHHHHHHHHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHHcCCeEEEEEEEcCCCCCc
Q 008863 103 GMETWEETAVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGD 182 (550)
Q Consensus 103 G~~~s~~~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~~~w~~v~ii~~~~~~g~~ 182 (550)
-+-++. ..+..+.+..++|++.... +.++.+...+ ++|+++......
T Consensus 81 iaCnta--~~~~~l~~~~~iPvi~i~~---------------------------~~~~~a~~~~-~rigVlat~~t~--- 127 (228)
T 2eq5_A 81 ISCAAD--PAVEKVRKLLSIPVIGAGS---------------------------SVSALALAYG-RRVGVLNLTEET--- 127 (228)
T ss_dssp ECSTTC--TTHHHHHHHCSSCEEEHHH---------------------------HHHHHHHTTC-SSEEEECSSSCC---
T ss_pred EeCCch--HHHHHHHHhCCCCEeCccH---------------------------HHHHHHHHhC-CeEEEEecCccc---
Confidence 543333 3344444566888776321 1111122345 789988875432
Q ss_pred chhHHHHHHHH-hcCCCeEEEEEeecCCC-CCCC-CChHHHHHHHHHhhcCCCeEEEEEcCCHHHHHHHHHHHH
Q 008863 183 SGKLALLAEAL-QNVSSSEIQSRLVLPPI-SSIS-DPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEAN 253 (550)
Q Consensus 183 ~~~~~~l~~~l-~~~g~~~v~~~~~~~~~-~~~~-~~~~d~~~~l~~i~~~~~~~ii~~~~~~~~~~~il~~a~ 253 (550)
. ..+++.+ .+.| ..+.... +... .... .....+...++++.+.++|.||+ .|..-....+....+
T Consensus 128 ~---~~~~~~~~~~~g-~~~~~~~-~~~v~~~~~~~~~~~l~~~~~~l~~~~~d~IvL-gCT~~~t~~~~~~i~ 195 (228)
T 2eq5_A 128 P---KVIRSILGNNLI-AEDHPSG-VSNTLDLLTDWGRREVINAAKRLKEKGVEVIAL-GCTGMSTIGIAPVLE 195 (228)
T ss_dssp C---HHHHHHHGGGEE-EEECCTT-CCSGGGGGSHHHHHHHHHHHHHHHHTTCSEEEE-CCTHHHHHTCHHHHH
T ss_pred H---HHHHHHHHHHhC-ccccCCc-eeeHHHhcChHHHHHHHHHHHHHHHcCCCEEEE-CCCCcchHHHHHHHH
Confidence 1 3567777 7777 6532111 1000 0000 01133556677777679999999 887765334444443
No 157
>2pju_A Propionate catabolism operon regulatory protein; structural genomics, PRPR, transcriptional regulation, PSI- 2, protein structure initiative; 2.10A {Escherichia coli} SCOP: c.92.3.1
Probab=83.32 E-value=23 Score=30.99 Aligned_cols=164 Identities=13% Similarity=0.208 Sum_probs=99.6
Q ss_pred cEEEEEEEecCCccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEcCCChHHHHHH
Q 008863 34 VTKIGAIVDANSQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEETAVV 113 (550)
Q Consensus 34 ~i~IG~i~~~~~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~~~~~v 113 (550)
-.+|.+++|.+ ....-++-.+.+.+ ....+.+.+. +-.+++..+.+++..+++.+||.- ..++..+
T Consensus 12 m~~ii~i~~~~-----~L~~~~~~i~~e~~-----~~~~I~vi~~--~le~av~~a~~~~~~~~~dVIISR--Ggta~~L 77 (225)
T 2pju_A 12 DKPVIWTVSVT-----RLFELFRDISLEFD-----HLANITPIQL--GFEKAVTYIRKKLANERCDAIIAA--GSNGAYL 77 (225)
T ss_dssp -CCEEEEECCH-----HHHHHHHHHHTTTT-----TTCEEEEECC--CHHHHHHHHHHHTTTSCCSEEEEE--HHHHHHH
T ss_pred CCCEEEEEchH-----HHHHHHHHHHHhhC-----CCceEEEecC--cHHHHHHHHHHHHhcCCCeEEEeC--ChHHHHH
Confidence 34788888764 33333333333332 2244445443 345788888887765568899853 2233333
Q ss_pred HHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHHcCCeEEEEEEEcCCCCCcchhHHHHHHHH
Q 008863 114 AEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLAEAL 193 (550)
Q Consensus 114 ~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~~~w~~v~ii~~~~~~g~~~~~~~~l~~~l 193 (550)
. +..++|+|....+ ..+..+++...-+ ++ ++++++...+. ....+.+.+.+
T Consensus 78 r---~~~~iPVV~I~vs--------------------~~Dil~aL~~a~~-~~-~kIavVg~~~~----~~~~~~i~~ll 128 (225)
T 2pju_A 78 K---SRLSVPVILIKPS--------------------GYDVLQFLAKAGK-LT-SSIGVVTYQET----IPALVAFQKTF 128 (225)
T ss_dssp H---TTCSSCEEEECCC--------------------HHHHHHHHHHTTC-TT-SCEEEEEESSC----CHHHHHHHHHH
T ss_pred H---hhCCCCEEEecCC--------------------HHHHHHHHHHHHh-hC-CcEEEEeCchh----hhHHHHHHHHh
Confidence 3 4568999886554 2334555554433 33 58999887665 22456677766
Q ss_pred hcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcCCCeEEEEEcCCHHHHHHHHHHHHHcCCCC
Q 008863 194 QNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGLVG 259 (550)
Q Consensus 194 ~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~~ii~~~~~~~~~~~il~~a~~~g~~~ 259 (550)
. +.+.... +. +.++....++++++.+.++||- +. ...+.|++.|+.+
T Consensus 129 ~----~~i~~~~-~~-------~~ee~~~~i~~l~~~G~~vVVG-~~------~~~~~A~~~Gl~~ 175 (225)
T 2pju_A 129 N----LRLDQRS-YI-------TEEDARGQINELKANGTEAVVG-AG------LITDLAEEAGMTG 175 (225)
T ss_dssp T----CCEEEEE-ES-------SHHHHHHHHHHHHHTTCCEEEE-SH------HHHHHHHHTTSEE
T ss_pred C----CceEEEE-eC-------CHHHHHHHHHHHHHCCCCEEEC-CH------HHHHHHHHcCCcE
Confidence 5 4444332 22 4478899999999999999887 43 2366788999864
No 158
>3n5l_A Binding protein component of ABC phosphonate TRAN; structural genomics, joint center for structural genomics; HET: UNL; 1.97A {Pseudomonas aeruginosa}
Probab=83.30 E-value=0.41 Score=44.88 Aligned_cols=47 Identities=11% Similarity=0.112 Sum_probs=38.2
Q ss_pred HHHHHHHHHhCCCCCCeEEEecCCChHHHHHhhhcccccEEeec-eeeeee
Q 008863 492 IELFRLVVDHLNYDLPYEFVPHDGVYDDLINGVYDKVNYFNYHD-KLLFKK 541 (550)
Q Consensus 492 iDll~~la~~l~f~~~~~~~~~~g~w~Gmi~el~~~~ad~a~~~-~ti~~~ 541 (550)
.+|+++|++.+|.+ +++++. ..|++++..|..|++|+++.+ .+.+..
T Consensus 24 ~~l~~~l~k~lG~~--ve~~~~-~~~~~~i~al~~G~vDi~~~~~~~~~~~ 71 (310)
T 3n5l_A 24 EPFLKDMSQQTGYQ--VKAFFA-PDYAGIIQGMRFDKVDIAWYGNKAAMEA 71 (310)
T ss_dssp HHHHHHHHHHHSSE--EEEECC-SSHHHHHHHHHTTSCSEEECCHHHHHHH
T ss_pred HHHHHHHHHHhCCC--EEEEeC-CCHHHHHHHHHcCCCCEEEECcHHHHHH
Confidence 58999999999988 777653 479999999999999999754 554433
No 159
>3bfj_A 1,3-propanediol oxidoreductase; opportunistic pathogens, decamer, structural genomics,struct proteomics in europe, spine; 2.70A {Klebsiella pneumoniae}
Probab=82.78 E-value=5.7 Score=38.30 Aligned_cols=90 Identities=11% Similarity=0.093 Sum_probs=61.6
Q ss_pred HHHHHHHHHcCCeEEEEEEEcCCCCCcc--hhHHHHHHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcCCCe
Q 008863 156 KCIADLARKYNWRRVAAIYEDNVYGGDS--GKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSR 233 (550)
Q Consensus 156 ~al~~~l~~~~w~~v~ii~~~~~~g~~~--~~~~~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~ 233 (550)
..+.++++.++.+++.+|++..... . ...+.+.+.+++.| +++.....+.+.. ..+...+.++.+++.++|
T Consensus 22 ~~l~~~l~~~g~~~~livtd~~~~~--~~~g~~~~v~~~L~~~g-~~~~~~~~~~~~p----~~~~v~~~~~~~~~~~~d 94 (387)
T 3bfj_A 22 SVVGERCQLLGGKKALLVTDKGLRA--IKDGAVDKTLHYLREAG-IEVAIFDGVEPNP----KDTNVRDGLAVFRREQCD 94 (387)
T ss_dssp GGHHHHHHHTTCSEEEEECCTTTC----CCSSHHHHHHHHHHTT-CEEEEECCCCSSC----BHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHcCCCEEEEEECcchhh--ccchHHHHHHHHHHHcC-CeEEEECCccCCC----CHHHHHHHHHHHHhcCCC
Confidence 3466778888889999999876543 3 37899999999988 8764332233332 456788888889989999
Q ss_pred EEEEEc-CCHHHHHHHHHHH
Q 008863 234 VFIVLQ-ASLDMTIHLFTEA 252 (550)
Q Consensus 234 ~ii~~~-~~~~~~~~il~~a 252 (550)
.||-+. ++.-++..++...
T Consensus 95 ~IIavGGGsv~D~aK~iA~~ 114 (387)
T 3bfj_A 95 IIVTVGGGSPHDCGKGIGIA 114 (387)
T ss_dssp EEEEEESHHHHHHHHHHHHH
T ss_pred EEEEeCCcchhhHHHHHHHH
Confidence 998622 2344556665554
No 160
>3ox4_A Alcohol dehydrogenase 2; iron, NAD, oxidoreductase; HET: NAD; 2.00A {Zymomonas mobilis} PDB: 3owo_A*
Probab=82.50 E-value=3.3 Score=39.94 Aligned_cols=92 Identities=13% Similarity=0.055 Sum_probs=63.6
Q ss_pred hHHHHHHHHHHcCCeEEEEEEEcCCCCCcchhHHHHHHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcCCCe
Q 008863 154 QMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSR 233 (550)
Q Consensus 154 ~~~al~~~l~~~~w~~v~ii~~~~~~g~~~~~~~~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~ 233 (550)
....+.++++.++.+++.+|++..-.. ....+.+.+.+++.| +.+.....+.+.. ..+...+.++.+++.++|
T Consensus 18 ~~~~l~~~~~~~g~~~~liVtd~~~~~--~g~~~~v~~~L~~~g-i~~~~~~~v~~~p----~~~~v~~~~~~~~~~~~D 90 (383)
T 3ox4_A 18 SLEKAIKDLNGSGFKNALIVSDAFMNK--SGVVKQVADLLKAQG-INSAVYDGVMPNP----TVTAVLEGLKILKDNNSD 90 (383)
T ss_dssp HHHHHHHTTTTSCCCEEEEEEEHHHHH--TTHHHHHHHHHHTTT-CEEEEEEEECSSC----BHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHcCCCEEEEEECCchhh--CchHHHHHHHHHHcC-CeEEEECCccCCC----CHHHHHHHHHHHHhcCcC
Confidence 345567778888999999999875322 236788999999999 8765443344433 556788888888888999
Q ss_pred EEEEEcCCH--HHHHHHHHHHH
Q 008863 234 VFIVLQASL--DMTIHLFTEAN 253 (550)
Q Consensus 234 ~ii~~~~~~--~~~~~il~~a~ 253 (550)
.||- .+.+ -++..++....
T Consensus 91 ~IIa-vGGGsv~D~aK~ia~~~ 111 (383)
T 3ox4_A 91 FVIS-LGGGSPHDCAKAIALVA 111 (383)
T ss_dssp EEEE-EESHHHHHHHHHHHHHH
T ss_pred EEEE-eCCcHHHHHHHHHHHHH
Confidence 8887 4443 34555555544
No 161
>4gd5_A Phosphate ABC transporter, phosphate-binding PROT; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE; 1.70A {Clostridium perfringens}
Probab=81.15 E-value=1.8 Score=39.70 Aligned_cols=49 Identities=10% Similarity=0.117 Sum_probs=26.9
Q ss_pred CCCcEEEEEEEecCCccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHH
Q 008863 31 IEEVTKIGAIVDANSQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQE 91 (550)
Q Consensus 31 ~~~~i~IG~i~~~~~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~ 91 (550)
..++|+|.+-. .....++...++..+..|+.+|++... .+..+++.+++
T Consensus 35 ~~~~i~i~GSs--------s~~p~~~~~a~~f~~~~p~v~v~~~~~----GSg~g~~~~~~ 83 (279)
T 4gd5_A 35 STNSVSISGST--------SVGPVMEAEAEAFKTKKPDVSIEINQI----GSSAGIKNAME 83 (279)
T ss_dssp --CEEEEEECT--------TTHHHHHHHHHHHHHHSTTCEEEEEEC----CHHHHHHHHHH
T ss_pred CCCeEEEEEeC--------cHHHHHHHHHHHHHHHCCCceEEEeeC----CcHHHHHHHHc
Confidence 34678886532 222445555666666668888887653 33445555443
No 162
>2dgd_A 223AA long hypothetical arylmalonate decarboxylas; octamer, alpha/beta structure, lyase; 2.90A {Sulfolobus tokodaii}
Probab=78.51 E-value=9.3 Score=33.40 Aligned_cols=91 Identities=15% Similarity=0.054 Sum_probs=58.5
Q ss_pred HHHHHHHHHHcCCeEEEEEEEcCCCCCcchhHHHHHHHHhcCCCeEEEEEeecCCCCC---CCCChHHHHHHHHHhhcC-
Q 008863 155 MKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLAEALQNVSSSEIQSRLVLPPISS---ISDPKEAVRGELKKVQDK- 230 (550)
Q Consensus 155 ~~al~~~l~~~~w~~v~ii~~~~~~g~~~~~~~~l~~~l~~~g~~~v~~~~~~~~~~~---~~~~~~d~~~~l~~i~~~- 230 (550)
..++++.++..+-++|+++. .|. ....+.+++.+.+.| +++........... -......+.+.++++.+.
T Consensus 96 ~~a~~~a~~~~g~~rvgvlt---~~~--~~~~~~~~~~l~~~G-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 169 (223)
T 2dgd_A 96 EESVYELLKKLNVRKLWIGT---PYI--KERTLEEVEWWRNKG-FEIVGYDGLGKIRGIDISNTPIFTIYRLVKRHLNEV 169 (223)
T ss_dssp HHHHHHHHHHTTCCEEEEEE---SSC--HHHHHHHHHHHHTTT-CEEEEEEECCCCSHHHHHTCCHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHHcCCCeEEEEe---CCc--hHHHHHHHHHHHhCC-cEEecccCCCCCCcchhhccCHHHHHHHHHHHhccc
Confidence 45666667778889999996 344 555668888999999 88765443322100 001234567777777777
Q ss_pred -CCeEEEEEcCCHHHHHHHHHHH
Q 008863 231 -QSRVFIVLQASLDMTIHLFTEA 252 (550)
Q Consensus 231 -~~~~ii~~~~~~~~~~~il~~a 252 (550)
+++.||+ .|..-....+..+.
T Consensus 170 ~gadaIvL-gCT~l~~~~~~~~l 191 (223)
T 2dgd_A 170 LKADAVYI-ACTALSTYEAVQYL 191 (223)
T ss_dssp TTSSEEEE-CCTTSCCTTHHHHH
T ss_pred CCCCEEEE-eCCcccHHHHHHHH
Confidence 8999999 77665544444443
No 163
>1o2d_A Alcohol dehydrogenase, iron-containing; TM0920, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE NAP TRS; 1.30A {Thermotoga maritima} SCOP: e.22.1.2 PDB: 1vhd_A*
Probab=74.46 E-value=17 Score=34.70 Aligned_cols=100 Identities=7% Similarity=0.015 Sum_probs=64.4
Q ss_pred CeEEEEecCcHHhHHHHHHHHHHcCCeEEEEEEEcCCCCCcchhHHHHHHHHhcCCCeEEEEEeecCCCCCCCCChHHHH
Q 008863 142 PYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVR 221 (550)
Q Consensus 142 ~~~~~~~p~~~~~~~al~~~l~~~~w~~v~ii~~~~~~g~~~~~~~~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~ 221 (550)
|+-+...+. ....+.++++.++ +++.+|++..... .....+.+.+.+++.| +.+.....+.+.. ..+...
T Consensus 19 p~~i~~G~g---~~~~l~~~l~~~g-~~~liVtd~~~~~-~~g~~~~v~~~L~~~g-~~~~~~~~~~~~p----~~~~v~ 88 (371)
T 1o2d_A 19 PTDVFFGEK---ILEKRGNIIDLLG-KRALVVTGKSSSK-KNGSLDDLKKLLDETE-ISYEIFDEVEENP----SFDNVM 88 (371)
T ss_dssp CCEEEESTT---HHHHHGGGGGGTC-SEEEEEEESSGGG-TSSHHHHHHHHHHHTT-CEEEEEEEECSSC----BHHHHH
T ss_pred CceEEECcC---HHHHHHHHHHHcC-CEEEEEECchHHh-hccHHHHHHHHHHHcC-CeEEEeCCccCCC----CHHHHH
Confidence 444444454 2344666777778 8999999875421 1236788999999888 7764433344433 556788
Q ss_pred HHHHHhhcCCCeEEEEEcCC--HHHHHHHHHHH
Q 008863 222 GELKKVQDKQSRVFIVLQAS--LDMTIHLFTEA 252 (550)
Q Consensus 222 ~~l~~i~~~~~~~ii~~~~~--~~~~~~il~~a 252 (550)
+.++.+++.++|.||- .+. .-++..++...
T Consensus 89 ~~~~~~~~~~~d~IIa-vGGGsv~D~AK~iA~~ 120 (371)
T 1o2d_A 89 KAVERYRNDSFDFVVG-LGGGSPMDFAKAVAVL 120 (371)
T ss_dssp HHHHHHTTSCCSEEEE-EESHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCEEEE-eCChHHHHHHHHHHHH
Confidence 8888888889999986 333 34555555444
No 164
>2zsk_A PH1733, 226AA long hypothetical aspartate racemase; alpha/beta fold, unknown function; 2.55A {Pyrococcus horikoshii}
Probab=73.89 E-value=19 Score=31.46 Aligned_cols=74 Identities=16% Similarity=0.242 Sum_probs=40.4
Q ss_pred hcCCeEEEEcCCChHHHHHHHHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHHcCCeEEEEE
Q 008863 94 NKEKVKVIAGMETWEETAVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAI 173 (550)
Q Consensus 94 ~~~~v~aiiG~~~s~~~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~~~w~~v~ii 173 (550)
.+.++.+|+-+-++.... +..+.+..++|++.. ..+.++.+...+-++|+++
T Consensus 70 ~~~g~d~iviaCnTa~~~-~~~l~~~~~iPvi~i---------------------------~~a~~~~~~~~~~~rigvl 121 (226)
T 2zsk_A 70 ERAGAELIAFAANTPHLV-FDDVQREVNVPMVSI---------------------------IDAVAEEILKRGVRKVLLL 121 (226)
T ss_dssp HHHTCSEEEESSSGGGGG-HHHHHHHCSSCBCCH---------------------------HHHHHHHHHHTTCCEEEEE
T ss_pred HHcCCCEEEECCCcHHHH-HHHHHHhCCCCEecc---------------------------HHHHHHHHHHcCCCeEEEE
Confidence 345788777554443322 344445567776652 2333333444456788888
Q ss_pred EEcCCCCCcchhHHHHHHHHhcCCCeEE
Q 008863 174 YEDNVYGGDSGKLALLAEALQNVSSSEI 201 (550)
Q Consensus 174 ~~~~~~g~~~~~~~~l~~~l~~~g~~~v 201 (550)
....... ...+++.+.+.| +++
T Consensus 122 aT~~T~~-----~~~y~~~l~~~g-~~v 143 (226)
T 2zsk_A 122 GTKTTMT-----ADFYIKTLEEKG-LEV 143 (226)
T ss_dssp SSTTTTS-----CHHHHHHHHTTT-CEE
T ss_pred eCHHHHh-----hhHHHHHHHHCC-CEE
Confidence 7543211 235666677777 665
No 165
>1rrm_A Lactaldehyde reductase; structural genomics, dehydrogenase, PSI, protein structure initiative; HET: APR; 1.60A {Escherichia coli} SCOP: e.22.1.2 PDB: 2bi4_A* 2bl4_A*
Probab=73.20 E-value=6.3 Score=38.00 Aligned_cols=91 Identities=11% Similarity=0.139 Sum_probs=61.5
Q ss_pred HHHHHHHHHcCCeEEEEEEEcCCCCCcchhHHHHHHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcCCCeEE
Q 008863 156 KCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVF 235 (550)
Q Consensus 156 ~al~~~l~~~~w~~v~ii~~~~~~g~~~~~~~~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~~i 235 (550)
..+.++++.++.+++.+|++..... ....+.+.+.+++.| +.+.....+.+.. ..+...+.++.+++.++|.|
T Consensus 20 ~~l~~~l~~~g~~~~livtd~~~~~--~g~~~~v~~~L~~~g-~~~~~~~~~~~~p----~~~~v~~~~~~~~~~~~d~I 92 (386)
T 1rrm_A 20 GALTDEVKRRGYQKALIVTDKTLVQ--CGVVAKVTDKMDAAG-LAWAIYDGVVPNP----TITVVKEGLGVFQNSGADYL 92 (386)
T ss_dssp GGHHHHHHHHTCCEEEEECBHHHHH--TTHHHHHHHHHHHTT-CEEEEECBCCSSC----BHHHHHHHHHHHHHHTCSEE
T ss_pred HHHHHHHHHcCCCEEEEEECcchhh--chHHHHHHHHHHHcC-CeEEEECCccCCC----CHHHHHHHHHHHHhcCcCEE
Confidence 3466777778889999999765322 236788999999888 7764333343332 55677888888888899999
Q ss_pred EEEc-CCHHHHHHHHHHHH
Q 008863 236 IVLQ-ASLDMTIHLFTEAN 253 (550)
Q Consensus 236 i~~~-~~~~~~~~il~~a~ 253 (550)
|-+. ++.-++..++....
T Consensus 93 IavGGGsv~D~aK~iA~~~ 111 (386)
T 1rrm_A 93 IAIGGGSPQDTCKAIGIIS 111 (386)
T ss_dssp EEEESHHHHHHHHHHHHHH
T ss_pred EEeCChHHHHHHHHHHHHH
Confidence 8622 24456666666554
No 166
>1jfl_A Aspartate racemase; alpha-beta structure, HOMO-dimer, homologous domains, isomer; 1.90A {Pyrococcus horikoshii} SCOP: c.78.2.1 c.78.2.1 PDB: 2dx7_A* 1iu9_A
Probab=71.47 E-value=17 Score=31.90 Aligned_cols=39 Identities=18% Similarity=0.227 Sum_probs=22.5
Q ss_pred HHHHhhhcCCeEEEEcCCChHHHHHHHHhhccCCccEEec
Q 008863 88 AAQELINKEKVKVIAGMETWEETAVVAEIASRVQVPILSF 127 (550)
Q Consensus 88 ~~~~li~~~~v~aiiG~~~s~~~~~v~~~~~~~~iP~is~ 127 (550)
.+.+.+.+.++.+|+-+-++.. ..+..+-+..++|++..
T Consensus 65 ~~~~~l~~~g~d~iviaCnTa~-~~~~~l~~~~~iPvi~i 103 (228)
T 1jfl_A 65 WTAKRLEECGADFIIMPCNTAH-AFVEDIRKAIKIPIISM 103 (228)
T ss_dssp HHHHHHHHHTCSEEECSCTGGG-GGHHHHHHHCSSCBCCH
T ss_pred HHHHHHHHcCCCEEEEcCccHH-HHHHHHHHhCCCCEech
Confidence 3333344468888886544443 33445556668887763
No 167
>3tpf_A Otcase, ornithine carbamoyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, rossman fold; 2.70A {Campylobacter jejuni subsp}
Probab=71.01 E-value=45 Score=30.68 Aligned_cols=128 Identities=15% Similarity=0.129 Sum_probs=75.1
Q ss_pred EEEEEEEecCCccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCC---C-CHHHHHHHHHHhhhcCCeEEEEcCCChHHH
Q 008863 35 TKIGAIVDANSQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHN---R-DPFQAATAAQELINKEKVKVIAGMETWEET 110 (550)
Q Consensus 35 i~IG~i~~~~~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~---~-~~~~a~~~~~~li~~~~v~aiiG~~~s~~~ 110 (550)
-.|+.+|..++ .+...+|+.|+.++ ++..+.+...++. + .....++....+ . .+.++=.+ ..
T Consensus 37 k~la~lF~e~S---TRTR~SFe~A~~~L----Gg~~i~l~~~~ss~~kgEsl~DTarvls~~-~--D~iviR~~-~~--- 102 (307)
T 3tpf_A 37 KTLAMIFEKNS---TRTRMAFELAITEL----GGKALFLSSNDLQLSRGEPVKDTARVIGAM-V--DFVMMRVN-KH--- 102 (307)
T ss_dssp CEEEEEESSCC---HHHHHHHHHHHHHT----TCEEEEECTTTCCTTTSSCHHHHHHHHHHH-S--SEEEEECS-CH---
T ss_pred CEEEEEecCCC---cchHHhHHHHHHHc----CCeEEEcCcccccCCCCCCHHHHHHHHHHh-C--CEEEEecC-Ch---
Confidence 35888887664 68889999999998 5556655433332 1 122333333333 1 23333333 22
Q ss_pred HHHHHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHH---HHcC-C---eEEEEEEEcCCCCCcc
Q 008863 111 AVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLA---RKYN-W---RRVAAIYEDNVYGGDS 183 (550)
Q Consensus 111 ~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l---~~~~-w---~~v~ii~~~~~~g~~~ 183 (550)
..+..++...++|+|..+.. .. + -.++++|++ +++| + .+++++.+ + .
T Consensus 103 ~~~~~lA~~~~vPVINag~~--------~~-------H-----PtQaLaDl~Ti~e~~g~l~~gl~va~vGD----~--~ 156 (307)
T 3tpf_A 103 ETLLEFARYSKAPVINALSE--------LY-------H-----PTQVLGDLFTIKEWNKMQNGIAKVAFIGD----S--N 156 (307)
T ss_dssp HHHHHHHHHCSSCEEEEECS--------SC-------C-----HHHHHHHHHHHHHTTCCGGGCCEEEEESC----S--S
T ss_pred HHHHHHHHhCCCCEEeCCCC--------Cc-------C-----cHHHHHHHHHHHHHhCCCCCCCEEEEEcC----C--C
Confidence 23445566678999986532 11 1 246777775 3453 3 46777654 2 4
Q ss_pred hhHHHHHHHHhcCCCeEEEE
Q 008863 184 GKLALLAEALQNVSSSEIQS 203 (550)
Q Consensus 184 ~~~~~l~~~l~~~g~~~v~~ 203 (550)
..+..+...+...| .++..
T Consensus 157 ~va~Sl~~~~~~~G-~~v~~ 175 (307)
T 3tpf_A 157 NMCNSWLITAAILG-FEISI 175 (307)
T ss_dssp HHHHHHHHHHHHHT-CEEEE
T ss_pred ccHHHHHHHHHHcC-CEEEE
Confidence 57788888888888 77654
No 168
>1vlj_A NADH-dependent butanol dehydrogenase; TM0820, structural G JCSG, protein structure initiative, PSI, joint center for S genomics; HET: NAP; 1.78A {Thermotoga maritima} SCOP: e.22.1.2
Probab=69.96 E-value=12 Score=36.18 Aligned_cols=90 Identities=11% Similarity=0.114 Sum_probs=58.9
Q ss_pred HHHHHHHHHcCCeEEEEEEEcCCCCCcchhHHHHHHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcCCCeEE
Q 008863 156 KCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVF 235 (550)
Q Consensus 156 ~al~~~l~~~~w~~v~ii~~~~~~g~~~~~~~~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~~i 235 (550)
..+.++++.++.+++.+|+++.... .....+.+.+.+++.| +.+.....+.+.. ..+...+.++.+++.++|.|
T Consensus 32 ~~l~~~l~~~g~~r~liVtd~~~~~-~~g~~~~v~~~L~~~g-~~~~~f~~v~~~p----~~~~v~~~~~~~~~~~~D~I 105 (407)
T 1vlj_A 32 PKIGEEIKNAGIRKVLFLYGGGSIK-KNGVYDQVVDSLKKHG-IEWVEVSGVKPNP----VLSKVHEAVEVAKKEKVEAV 105 (407)
T ss_dssp GGHHHHHHHTTCCEEEEEECSSHHH-HSSHHHHHHHHHHHTT-CEEEEECCCCSSC----BHHHHHHHHHHHHHTTCSEE
T ss_pred HHHHHHHHHcCCCeEEEEECchHHh-hccHHHHHHHHHHHcC-CeEEEecCccCCC----CHHHHHHHHHHHHhcCCCEE
Confidence 3466778888889999999744221 0126788889998888 7764322222222 45677888888888999999
Q ss_pred EEEcC--CHHHHHHHHHHH
Q 008863 236 IVLQA--SLDMTIHLFTEA 252 (550)
Q Consensus 236 i~~~~--~~~~~~~il~~a 252 (550)
|- .+ +.-++..++...
T Consensus 106 Ia-vGGGsviD~AK~iA~~ 123 (407)
T 1vlj_A 106 LG-VGGGSVVDSAKAVAAG 123 (407)
T ss_dssp EE-EESHHHHHHHHHHHHH
T ss_pred EE-eCChhHHHHHHHHHHH
Confidence 96 33 334555555544
No 169
>3uhj_A Probable glycerol dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.34A {Sinorhizobium meliloti}
Probab=69.79 E-value=7.2 Score=37.52 Aligned_cols=76 Identities=8% Similarity=0.059 Sum_probs=48.6
Q ss_pred HHHHHHHHHcCCeEEEEEEEcCCCCCcchhHHHHHHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcCCCeEE
Q 008863 156 KCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVF 235 (550)
Q Consensus 156 ~al~~~l~~~~w~~v~ii~~~~~~g~~~~~~~~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~~i 235 (550)
..+.++++.++ +++.+|++...+ ....+.+.+.+++ | +.+.+ ..+.... ..+...+.++.+++.++|.|
T Consensus 42 ~~l~~~l~~~g-~r~liVtd~~~~---~~~~~~v~~~L~~-g-~~~~~-~~~~~~p----~~~~v~~~~~~~~~~~~d~I 110 (387)
T 3uhj_A 42 DKLAAYLAPLG-KRALVLIDRVLF---DALSERIGKSCGD-S-LDIRF-ERFGGEC----CTSEIERVRKVAIEHGSDIL 110 (387)
T ss_dssp TTTHHHHGGGC-SEEEEEECTTTH---HHHHHHC-------C-CEEEE-EECCSSC----SHHHHHHHHHHHHHHTCSEE
T ss_pred HHHHHHHHHcC-CEEEEEECchHH---HHHHHHHHHHHHc-C-CCeEE-EEcCCCC----CHHHHHHHHHHHhhcCCCEE
Confidence 34667788888 999999977654 3366778888888 8 88733 3344433 45677788888888899998
Q ss_pred EEEcCCHH
Q 008863 236 IVLQASLD 243 (550)
Q Consensus 236 i~~~~~~~ 243 (550)
|- .+.+.
T Consensus 111 Ia-vGGGs 117 (387)
T 3uhj_A 111 VG-VGGGK 117 (387)
T ss_dssp EE-ESSHH
T ss_pred EE-eCCcH
Confidence 87 55443
No 170
>3r7f_A Aspartate carbamoyltransferase; aspartate transcarbamoylase, carbamoyl phosphate, transferas catalytic cycle; 2.10A {Bacillus subtilis} PDB: 3r7d_A 3r7l_A* 2at2_A
Probab=69.21 E-value=12 Score=34.29 Aligned_cols=135 Identities=16% Similarity=0.100 Sum_probs=79.2
Q ss_pred EEEEEEEecCCccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEE--cCCChHHHHH
Q 008863 35 TKIGAIVDANSQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIA--GMETWEETAV 112 (550)
Q Consensus 35 i~IG~i~~~~~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aii--G~~~s~~~~~ 112 (550)
-.|+.+|..++ .+...+|+.|+.++ ++..+.+...++.-.-.+.+....+.++.-++.+|+ .+. .....
T Consensus 37 k~la~lF~e~S---TRTR~SFE~A~~~L----Gg~~i~l~~~~ss~~kgEsl~DTarvLs~~~~D~iviR~~~-~~~~~- 107 (304)
T 3r7f_A 37 KFAANLFFEPS---TRTRFSFEVAEKKL----GMNVLNLDGTSTSVQKGETLYDTIRTLESIGVDVCVIRHSE-DEYYE- 107 (304)
T ss_dssp CEEEEEESSCC---SHHHHHHHHHHHHT----TCEEEEEETTSTTSCSSSCHHHHHHHHHHHTCCEEEEECSS-TTCHH-
T ss_pred CEEEEEecCCC---hhHHHhHHHHHHHC----CCeEEEECcccccCCCCCCHHHHHHHHHHhcCCEEEEecCC-hhHHH-
Confidence 45888887663 58889999999998 566776644343322223334344444433333443 332 23333
Q ss_pred HHHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHH---HHc---CCeEEEEEEEcCCCCCcchhH
Q 008863 113 VAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLA---RKY---NWRRVAAIYEDNVYGGDSGKL 186 (550)
Q Consensus 113 v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l---~~~---~w~~v~ii~~~~~~g~~~~~~ 186 (550)
.+++...+|+|..+.+ + .. + -.++++|++ +++ ...+|+++.+-. + ...+
T Consensus 108 --~la~~~~vPVINagdg--~-----~~-------H-----PtQaLaDl~Ti~e~~g~l~glkva~vGD~~-~---~rva 162 (304)
T 3r7f_A 108 --ELVSQVNIPILNAGDG--C-----GQ-------H-----PTQSLLDLMTIYEEFNTFKGLTVSIHGDIK-H---SRVA 162 (304)
T ss_dssp --HHHHHCSSCEEESCCT--T-----SC-------C-----HHHHHHHHHHHHHHHSCCTTCEEEEESCCT-T---CHHH
T ss_pred --HHHHhCCCCEEeCCCC--C-----Cc-------C-----cHHHHHHHHHHHHHhCCCCCCEEEEEcCCC-C---cchH
Confidence 3445678999996533 1 11 1 246777765 344 345777776421 1 3467
Q ss_pred HHHHHHHhcCCCeEEEEE
Q 008863 187 ALLAEALQNVSSSEIQSR 204 (550)
Q Consensus 187 ~~l~~~l~~~g~~~v~~~ 204 (550)
..+...+...| +++...
T Consensus 163 ~Sl~~~~~~~G-~~v~~~ 179 (304)
T 3r7f_A 163 RSNAEVLTRLG-ARVLFS 179 (304)
T ss_dssp HHHHHHHHHTT-CEEEEE
T ss_pred HHHHHHHHHcC-CEEEEE
Confidence 88888888888 776543
No 171
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=66.09 E-value=38 Score=30.74 Aligned_cols=123 Identities=12% Similarity=0.035 Sum_probs=72.8
Q ss_pred cEEEEEEEecCCccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhc-CCeEEEEcCCChHHHHH
Q 008863 34 VTKIGAIVDANSQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINK-EKVKVIAGMETWEETAV 112 (550)
Q Consensus 34 ~i~IG~i~~~~~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~-~~v~aiiG~~~s~~~~~ 112 (550)
.=+|+++..........-..|++.++++.+ ++.++.. +.....+...+.+.+.+++.. .++.+|++.... .+..
T Consensus 127 ~~~i~~i~~~~~~~~~~R~~gf~~~l~~~~---~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~-~a~g 201 (305)
T 3g1w_A 127 EGEVAVITLPNQLNHQERTTGFKETLEAEF---PAIEVIA-VEDGRGDSLHSRRVAHQLLEDYPNLAGIFATEAN-GGVG 201 (305)
T ss_dssp CEEEEEEECTTCHHHHHHHHHHHHHHHHHC---TTEEEEE-EEECTTCHHHHHHHHHHHHHHCTTEEEEEESSHH-HHHH
T ss_pred CcEEEEEeCCCcccHHHHHHHHHHHHHhhC---CCCEEEE-EecCCCCHHHHHHHHHHHHHhCCCceEEEECCCc-chhh
Confidence 357888875543334456688888888753 2344433 234556788888888888864 479999985443 3333
Q ss_pred HHHhhccCC----ccEEeccCCCCCCcccCCCCCe-EEEEecCcHHhHHHHHHHHH
Q 008863 113 VAEIASRVQ----VPILSFAAPAVTPLSMSRRWPY-LIRMASNDSEQMKCIADLAR 163 (550)
Q Consensus 113 v~~~~~~~~----iP~is~~~~~~~~~~~~~~~~~-~~~~~p~~~~~~~al~~~l~ 163 (550)
+...+...+ +.++++... ......-..|. +-.+..+...++...+++|.
T Consensus 202 ~~~al~~~g~~~di~vig~d~~--~~~~~~~~~~~l~ttv~~~~~~~g~~av~~l~ 255 (305)
T 3g1w_A 202 VGDAVRLESRAGEIQIISFDTD--KGTLDLVDEGIISATLAQGTWNMGYWSLTYLF 255 (305)
T ss_dssp HHHHHHHTTCTTTSEEEEESCC--HHHHHHHHTTSSCEEEEECHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCCeEEEEeCCC--HHHHHHHHcCceEEEEecChHHHHHHHHHHHH
Confidence 444444444 577777654 11111111133 24556666777777777663
No 172
>3s81_A Putative aspartate racemase; structural genomics, center for structural genomics of infec diseases, csgid, alpha beta fold, cytosol; 1.80A {Salmonella enterica subsp} PDB: 3s7z_A
Probab=65.07 E-value=6.7 Score=35.48 Aligned_cols=40 Identities=5% Similarity=0.032 Sum_probs=25.6
Q ss_pred HHHHHhhhcCCeEEEEcCCChHHHHHHHHhhccCCccEEec
Q 008863 87 TAAQELINKEKVKVIAGMETWEETAVVAEIASRVQVPILSF 127 (550)
Q Consensus 87 ~~~~~li~~~~v~aiiG~~~s~~~~~v~~~~~~~~iP~is~ 127 (550)
..+.+.+.+.++.+|+-+-++... .+..+-+..++|+|..
T Consensus 89 ~~~~~~L~~~Gad~IVIaCNTah~-~l~~lr~~~~iPvigi 128 (268)
T 3s81_A 89 ERYLHMLEDAGAECIVIPCNTAHY-WFDDLQNVAKARMISI 128 (268)
T ss_dssp HHHHHHHHHTTCSEEECSCSGGGG-GHHHHHHHCSSEEECH
T ss_pred HHHHHHHHHcCCCEEEEeCCCHHH-HHHHHHHHCCCCEEcc
Confidence 444444445799988876554333 4455666779999974
No 173
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=64.72 E-value=22 Score=32.60 Aligned_cols=80 Identities=8% Similarity=0.174 Sum_probs=56.6
Q ss_pred eEEEEEEEc--CCCCCcchhHHHHHHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcCCCeEEEEEcCCHHHH
Q 008863 168 RRVAAIYED--NVYGGDSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMT 245 (550)
Q Consensus 168 ~~v~ii~~~--~~~g~~~~~~~~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~~ii~~~~~~~~~ 245 (550)
++|+++..+ +.|. ....+.+++.+++.| ..+..... .. +.......++.+...+.+.||+........
T Consensus 3 ~~Igvi~~~~~~~~~--~~~~~gi~~~a~~~g-~~~~~~~~-~~------~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~ 72 (313)
T 3m9w_A 3 VKIGMAIDDLRLERW--QKDRDIFVKKAESLG-AKVFVQSA-NG------NEETQMSQIENMINRGVDVLVIIPYNGQVL 72 (313)
T ss_dssp CEEEEEESCCSSSTT--HHHHHHHHHHHHHTS-CEEEEEEC-TT------CHHHHHHHHHHHHHTTCSEEEEECSSTTSC
T ss_pred cEEEEEeCCCCChHH--HHHHHHHHHHHHHcC-CEEEEECC-CC------CHHHHHHHHHHHHHcCCCEEEEeCCChhhh
Confidence 468888875 4576 888899999999999 87765432 11 234456677888888999988834444444
Q ss_pred HHHHHHHHHcCC
Q 008863 246 IHLFTEANRMGL 257 (550)
Q Consensus 246 ~~il~~a~~~g~ 257 (550)
...++.+.+.|+
T Consensus 73 ~~~~~~~~~~~i 84 (313)
T 3m9w_A 73 SNVVKEAKQEGI 84 (313)
T ss_dssp HHHHHHHHTTTC
T ss_pred HHHHHHHHHCCC
Confidence 667888887775
No 174
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii}
Probab=63.94 E-value=67 Score=28.81 Aligned_cols=118 Identities=10% Similarity=0.137 Sum_probs=71.0
Q ss_pred EEEEEEecCCccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhc-CCeEEEEcCCChHHHHHHH
Q 008863 36 KIGAIVDANSQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINK-EKVKVIAGMETWEETAVVA 114 (550)
Q Consensus 36 ~IG~i~~~~~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~-~~v~aiiG~~~s~~~~~v~ 114 (550)
+||.+..........-..|++.|+++.+- .... .+.....+...+.+.+.+++.. ..+.||+..... .+..+.
T Consensus 128 ~I~~i~~~~~~~~~~R~~Gf~~al~~~g~---~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~-~A~g~~ 201 (289)
T 3k9c_A 128 NIAHIDGADAPGGADRRAGFLAAMDRHGL---SASA--TVVTGGTTETEGAEGMHTLLEMPTPPTAVVAFNDR-CATGVL 201 (289)
T ss_dssp SEEEECCTTSTTHHHHHHHHHHHHHHTTC---GGGE--EEECCCSSHHHHHHHHHHHHTSSSCCSEEEESSHH-HHHHHH
T ss_pred cEEEEeCCCCccHHHHHHHHHHHHHHCCC---CCCc--cEEECCCCHHHHHHHHHHHHcCCCCCCEEEECChH-HHHHHH
Confidence 67877765533445566888888877532 1222 2334556777888888888863 468899975443 333344
Q ss_pred HhhccCC------ccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHH
Q 008863 115 EIASRVQ------VPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLAR 163 (550)
Q Consensus 115 ~~~~~~~------iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~ 163 (550)
..+.+.+ +.++++... +.. ....|-+-.+..+...++...+++|.
T Consensus 202 ~al~~~g~~vP~di~vig~D~~---~~~-~~~~p~lttv~~~~~~~g~~a~~~l~ 252 (289)
T 3k9c_A 202 DLLVRSGRDVPADISVVGYDDS---RLA-RIPHVQMTTISQDATHMAEAAVDGAL 252 (289)
T ss_dssp HHHHHTTCCTTTTCEEEEEECC---TTT-TCTTTCCEEEECCHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCCCceEEEEECCH---HHH-hcCCCCcceEecCHHHHHHHHHHHHH
Confidence 4444443 337776654 222 22234455677777888887777764
No 175
>2fvy_A D-galactose-binding periplasmic protein; periplasmic binding protien, hinge, chemotaxis, transport,; HET: BGC; 0.92A {Escherichia coli} SCOP: c.93.1.1 PDB: 1glg_A* 2fw0_A* 2gbp_A* 2qw1_A* 2hph_A* 2ipn_A* 2ipm_A* 2ipl_A* 1gca_A* 1gcg_A 3ga5_A* 3gbp_A*
Probab=63.30 E-value=44 Score=30.29 Aligned_cols=122 Identities=13% Similarity=0.100 Sum_probs=72.0
Q ss_pred CcEEEEEEEecC-CccchhHHHHHHHHHHHHhcCCCCcEEEEE-EecCCCCHHHHHHHHHHhhhcC---CeEEEEcCCCh
Q 008863 33 EVTKIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQ-IRDHNRDPFQAATAAQELINKE---KVKVIAGMETW 107 (550)
Q Consensus 33 ~~i~IG~i~~~~-~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~-~~d~~~~~~~a~~~~~~li~~~---~v~aiiG~~~s 107 (550)
+..+|+++.... ......-..|++-++++. |.++... +.....+...+.+.+.+++... ++.+|++....
T Consensus 139 g~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~-----g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ai~~~~d~ 213 (309)
T 2fvy_A 139 GQIQFVLLKGEPGHPDAEARTTYVIKELNDK-----GIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDA 213 (309)
T ss_dssp SSEEEEEEECSTTCHHHHHHHHHHHHHHHHT-----TCCEEEEEEEECTTCHHHHHHHHHHHHTSTTGGGCCEEEESSHH
T ss_pred CceEEEEEEcCCCCccHHHHHHHHHHHHHhc-----CCceEEEEEecCCCCHHHHHHHHHHHHHhCCCCCccEEEECCch
Confidence 568999987653 223345668888888774 3333322 2234457777888888888752 68999986444
Q ss_pred HHHHHHHHhhcc--C-CccEEeccCCCCCCccc--CCCCCeEEEEecCcHHhHHHHHHHHH
Q 008863 108 EETAVVAEIASR--V-QVPILSFAAPAVTPLSM--SRRWPYLIRMASNDSEQMKCIADLAR 163 (550)
Q Consensus 108 ~~~~~v~~~~~~--~-~iP~is~~~~~~~~~~~--~~~~~~~~~~~p~~~~~~~al~~~l~ 163 (550)
... .+...+.+ . +++++++... +... ....|.+..+..+...++...+++|.
T Consensus 214 ~a~-g~~~al~~~g~~di~vig~d~~---~~~~~~~~~g~~lttv~~~~~~~g~~a~~~l~ 270 (309)
T 2fvy_A 214 MAM-GAVEALKAHNKSSIPVFGVDAL---PEALALVKSGALAGTVLNDANNQAKATFDLAK 270 (309)
T ss_dssp HHH-HHHHHHHHTTCTTSCEECSBCC---HHHHHHHHHTSSCBEEECCHHHHHHHHHHHHH
T ss_pred hHH-HHHHHHHHcCCCCceEEecCCC---HHHHHHHHcCCceEEEecCHHHHHHHHHHHHH
Confidence 333 33333333 3 6888887655 2211 10113344556666777777777663
No 176
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=63.19 E-value=38 Score=24.13 Aligned_cols=51 Identities=12% Similarity=0.242 Sum_probs=32.5
Q ss_pred EEecCcHHhHHHHHHHHHHcCCeEEEEEEEcCCCCCcchhHHHHHHHHhcCCCeEEE
Q 008863 146 RMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLAEALQNVSSSEIQ 202 (550)
Q Consensus 146 ~~~p~~~~~~~al~~~l~~~~w~~v~ii~~~~~~g~~~~~~~~l~~~l~~~g~~~v~ 202 (550)
-+.-++...++....+++..|.+-..+||+.+ +..++.|.....+.| +++.
T Consensus 55 vvvvddkewaekairfvkslgaqvliiiydqd-----qnrleefsrevrrrg-fevr 105 (134)
T 2l69_A 55 VVVVDDKEWAEKAIRFVKSLGAQVLIIIYDQD-----QNRLEEFSREVRRRG-FEVR 105 (134)
T ss_dssp EEECSSHHHHHHHHHHHHHHCCCCEEEEECSC-----HHHHHHHHHHHHHTT-CCEE
T ss_pred EEEEccHHHHHHHHHHHHhcCCeEEEEEEeCc-----hhHHHHHHHHHHhcC-ceEE
Confidence 34445556666667777777777777777644 345666777777777 6654
No 177
>1pvv_A Otcase, ornithine carbamoyltransferase; dodecamer; 1.87A {Pyrococcus furiosus} SCOP: c.78.1.1 c.78.1.1 PDB: 1a1s_A
Probab=63.02 E-value=51 Score=30.43 Aligned_cols=132 Identities=14% Similarity=0.199 Sum_probs=80.5
Q ss_pred EEEEEEEecCCccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEc-CCChHHHHHH
Q 008863 35 TKIGAIVDANSQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAG-METWEETAVV 113 (550)
Q Consensus 35 i~IG~i~~~~~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG-~~~s~~~~~v 113 (550)
-.|+.+|-..+ .+...+|+.|+.++ +|..+.+...++.-.-.+.+....+.++.- +.+|+- ...... +
T Consensus 47 k~la~lF~e~S---TRTR~SFe~A~~~L----Gg~~i~l~~~~ss~~kgEsl~DTarvls~~-~D~iviR~~~~~~---~ 115 (315)
T 1pvv_A 47 KTLAMIFQKPS---TRTRVSFEVAMAHL----GGHALYLNAQDLQLRRGETIADTARVLSRY-VDAIMARVYDHKD---V 115 (315)
T ss_dssp CEEEEEESSCC---SHHHHHHHHHHHHT----TSEEEEEEGGGSTTTTTCCHHHHHHHHTTT-CSEEEEECSSHHH---H
T ss_pred CEEEEEecCCC---cchHHHHHHHHHHc----CCeEEEECCccccCCCCcCHHHHHHHHHHh-CcEEEEecCchHH---H
Confidence 46788886653 58889999999999 566777765554433334444455555532 344442 222233 4
Q ss_pred HHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHH---HHcC---CeEEEEEEEcCCCCCcchhHH
Q 008863 114 AEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLA---RKYN---WRRVAAIYEDNVYGGDSGKLA 187 (550)
Q Consensus 114 ~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l---~~~~---w~~v~ii~~~~~~g~~~~~~~ 187 (550)
..++....+|+|..+.. .. + -.++++|++ +++| -.+++++.+. ...+.
T Consensus 116 ~~lA~~~~vPVINa~~~--------~~-------H-----PtQaLaDl~Ti~e~~g~l~gl~va~vGD~------~rva~ 169 (315)
T 1pvv_A 116 EDLAKYATVPVINGLSD--------FS-------H-----PCQALADYMTIWEKKGTIKGVKVVYVGDG------NNVAH 169 (315)
T ss_dssp HHHHHHCSSCEEEEECS--------SC-------C-----HHHHHHHHHHHHHHHSCCTTCEEEEESCC------CHHHH
T ss_pred HHHHHhCCCCEEcCCCC--------CC-------C-----cHHHHHHHHHHHHHhCCcCCcEEEEECCC------cchHH
Confidence 44556668999994422 11 1 246777775 3444 3567776542 34678
Q ss_pred HHHHHHhcCCCeEEEEE
Q 008863 188 LLAEALQNVSSSEIQSR 204 (550)
Q Consensus 188 ~l~~~l~~~g~~~v~~~ 204 (550)
.+...+...| .++...
T Consensus 170 Sl~~~~~~~g-~~v~~~ 185 (315)
T 1pvv_A 170 SLMIAGTKLG-ADVVVA 185 (315)
T ss_dssp HHHHHHHHTT-CEEEEE
T ss_pred HHHHHHHHCC-CEEEEE
Confidence 8888888888 876653
No 178
>3ce9_A Glycerol dehydrogenase; NP_348253.1, 3-dehydroquinate syntha structural genomics, joint center for structural genomics; HET: MSE; 2.37A {Clostridium acetobutylicum atcc 824}
Probab=62.87 E-value=26 Score=33.11 Aligned_cols=109 Identities=12% Similarity=0.149 Sum_probs=67.4
Q ss_pred CeEEEEecCcHHhHHHHHHHHHHcCCeEEEEEEEcCCCCCcchhHHHHHHHHhcCCCeEEEEEeecCCCCCCCCChHHHH
Q 008863 142 PYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVR 221 (550)
Q Consensus 142 ~~~~~~~p~~~~~~~al~~~l~~~~w~~v~ii~~~~~~g~~~~~~~~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~ 221 (550)
|+-+...+... ..+.++++.++.+++.+|++...+ ....+.+.+.+++.| +++......+. . ..+...
T Consensus 12 p~~i~~G~g~~---~~l~~~l~~~g~~~~livtd~~~~---~~~~~~v~~~L~~~g-~~~~~~~~~~~-~----~~~~v~ 79 (354)
T 3ce9_A 12 PLILEVGNNKI---YNIGQIIKKGNFKRVSLYFGEGIY---ELFGETIEKSIKSSN-IEIEAVETVKN-I----DFDEIG 79 (354)
T ss_dssp CSEEEEESSCG---GGHHHHHGGGTCSEEEEEEETTHH---HHHHHHHHHHHHTTT-CEEEEEEEECC-C----BHHHHH
T ss_pred CcEEEECCCHH---HHHHHHHHhcCCCeEEEEECccHH---HHHHHHHHHHHHHcC-CeEEEEecCCC-C----CHHHHH
Confidence 55555555532 346677877888899999986543 345688888898888 77654332222 1 445666
Q ss_pred HHHHHhhcCCCeEEEEEcCC--HHHHHHHHHHHHHcCCCCCCEEEEEecc
Q 008863 222 GELKKVQDKQSRVFIVLQAS--LDMTIHLFTEANRMGLVGKDSVWIVTNT 269 (550)
Q Consensus 222 ~~l~~i~~~~~~~ii~~~~~--~~~~~~il~~a~~~g~~~~~~~~i~~~~ 269 (550)
.. +.+++.+.|.||- .+. .-++..++...+ + -.++-|.|..
T Consensus 80 ~~-~~~~~~~~d~IIa-vGGGsv~D~aK~vA~~~--~---~p~i~IPTT~ 122 (354)
T 3ce9_A 80 TN-AFKIPAEVDALIG-IGGGKAIDAVKYMAFLR--K---LPFISVPTST 122 (354)
T ss_dssp HH-HTTSCTTCCEEEE-EESHHHHHHHHHHHHHH--T---CCEEEEESCC
T ss_pred HH-HHhhhcCCCEEEE-ECChHHHHHHHHHHhhc--C---CCEEEecCcc
Confidence 77 7777788999986 433 345555555332 2 2355555554
No 179
>4a8p_A Putrescine carbamoyltransferase; ornithine agmatine deiminase route; HET: PAO; 2.00A {Enterococcus faecalis} PDB: 4a8h_A* 3txx_A
Probab=61.71 E-value=1.1e+02 Score=28.79 Aligned_cols=132 Identities=11% Similarity=0.175 Sum_probs=79.0
Q ss_pred EEEEEEEecCCccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEc-CCChHHHHHH
Q 008863 35 TKIGAIVDANSQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAG-METWEETAVV 113 (550)
Q Consensus 35 i~IG~i~~~~~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG-~~~s~~~~~v 113 (550)
-.|+.+|...+ .+...+|+.|+.++ ++..+.+...++.-.-.+.+....+.++. -+.+|+- .... ..+
T Consensus 42 K~la~lF~epS---TRTR~SFE~A~~~L----Gg~vi~l~~~~ssl~kgEsl~DTarvLs~-y~D~IviR~~~~---~~~ 110 (355)
T 4a8p_A 42 KSLGMIFQQSS---TRTRVSFETAMEQL----GGHGEYLAPGQIQLGGHETIEDTSRVLSR-LVDILMARVERH---HSI 110 (355)
T ss_dssp CEEEEEESSCC---SHHHHHHHHHHHHT----TCEEEEECBTTBCBTTTBCHHHHHHHHTT-TCSEEEEECSSH---HHH
T ss_pred CEEEEEecCCC---hhhHhhHHHHHHHc----CCeEEEeCcccccCCCCcCHHHHHHHHHH-hCCEEEEecCcH---HHH
Confidence 46788887664 58889999999998 56666554333332223344444445543 2444442 2222 334
Q ss_pred HHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHH---HHc--C--C--eEEEEEEEcCCCCCcch
Q 008863 114 AEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLA---RKY--N--W--RRVAAIYEDNVYGGDSG 184 (550)
Q Consensus 114 ~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l---~~~--~--w--~~v~ii~~~~~~g~~~~ 184 (550)
..++...++|+|..+.. .. . -.++++|++ +++ | + .+|+++.+- ..
T Consensus 111 ~~lA~~~~vPVINag~~--------~~-------H-----PtQaLaDl~TI~E~~~~G~~l~glkva~vGD~------~r 164 (355)
T 4a8p_A 111 VDLANCATIPVINGMSD--------YN-------H-----PTQELGDLCTMVEHLPEGKKLEDCKVVFVGDA------TQ 164 (355)
T ss_dssp HHHHHHCSSCEEECCCS--------SC-------C-----HHHHHHHHHHHHHTCCTTCCGGGCEEEEESCC------CH
T ss_pred HHHHHhCCCCEEeCCCC--------CC-------C-----cHHHHHHHHHHHHHhhcCCCCCCCEEEEECCC------ch
Confidence 44556678999985422 11 1 246777765 456 5 2 467766542 34
Q ss_pred hHHHHHHHHhcCCCeEEEEE
Q 008863 185 KLALLAEALQNVSSSEIQSR 204 (550)
Q Consensus 185 ~~~~l~~~l~~~g~~~v~~~ 204 (550)
.+..+...+...| .++...
T Consensus 165 va~Sl~~~~~~~G-~~v~~~ 183 (355)
T 4a8p_A 165 VCFSLGLITTKMG-MNFVHF 183 (355)
T ss_dssp HHHHHHHHHHHTT-CEEEEE
T ss_pred hHHHHHHHHHHcC-CEEEEE
Confidence 6788888888888 776543
No 180
>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structur genomics, protein structure initiative; 2.20A {Bacteroides fragilis}
Probab=61.70 E-value=25 Score=31.90 Aligned_cols=86 Identities=12% Similarity=0.070 Sum_probs=55.6
Q ss_pred cCCeEEEEEEEcC---CCCCcchhHHHHHHHHhcC-CCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcCCCeEEEEEcC
Q 008863 165 YNWRRVAAIYEDN---VYGGDSGKLALLAEALQNV-SSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQA 240 (550)
Q Consensus 165 ~~w~~v~ii~~~~---~~g~~~~~~~~l~~~l~~~-g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~~ii~~~~ 240 (550)
-+-.+|+++..+. .|. ....+.+++.+.+. | ..+.......... +.......++.+...+.|.||+...
T Consensus 6 ~~~~~Igvi~~~~~~~~~~--~~~~~gi~~~a~~~~g-~~~~~~~~~~~~~----~~~~~~~~i~~l~~~~vdgiii~~~ 78 (304)
T 3gbv_A 6 NKKYTFACLLPKHLEGEYW--TDVQKGIREAVTTYSD-FNISANITHYDPY----DYNSFVATSQAVIEEQPDGVMFAPT 78 (304)
T ss_dssp -CCEEEEEEEECCCTTSHH--HHHHHHHHHHHHHTGG-GCEEEEEEEECSS----CHHHHHHHHHHHHTTCCSEEEECCS
T ss_pred CCcceEEEEecCCCCchHH--HHHHHHHHHHHHHHHh-CCeEEEEEcCCCC----CHHHHHHHHHHHHhcCCCEEEECCC
Confidence 3456788888763 355 67778888888887 6 6555443322111 3345567788888889999998334
Q ss_pred CHHHHHHHHHHHHHcCC
Q 008863 241 SLDMTIHLFTEANRMGL 257 (550)
Q Consensus 241 ~~~~~~~il~~a~~~g~ 257 (550)
..+.....++.+.+.|+
T Consensus 79 ~~~~~~~~~~~~~~~~i 95 (304)
T 3gbv_A 79 VPQYTKGFTDALNELGI 95 (304)
T ss_dssp SGGGTHHHHHHHHHHTC
T ss_pred ChHHHHHHHHHHHHCCC
Confidence 44445667788887775
No 181
>1jq5_A Glycerol dehydrogenase; oxidoreductase, NAD, glycerol metabolism; HET: NAD; 1.70A {Geobacillus stearothermophilus} SCOP: e.22.1.2 PDB: 1jpu_A* 1jqa_A*
Probab=60.46 E-value=24 Score=33.54 Aligned_cols=95 Identities=12% Similarity=0.088 Sum_probs=61.9
Q ss_pred CeEEEEecCcHHhHHHHHHHHHHcCCeEEEEEEEcCCCCCcchhHHHHHHHHhcCCCeEEEEEeecCCCCCCCCChHHHH
Q 008863 142 PYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVR 221 (550)
Q Consensus 142 ~~~~~~~p~~~~~~~al~~~l~~~~w~~v~ii~~~~~~g~~~~~~~~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~ 221 (550)
|+-+...+.. ...+.++++.++ +++.+|++...+ ....+.+.+.+++.| +.+.. ..+.... ..+...
T Consensus 10 p~~i~~G~g~---~~~l~~~l~~~g-~~~livtd~~~~---~~~~~~v~~~L~~~g-~~~~~-~~~~ge~----~~~~v~ 76 (370)
T 1jq5_A 10 PAKYVQGKNV---ITKIANYLEGIG-NKTVVIADEIVW---KIAGHTIVNELKKGN-IAAEE-VVFSGEA----SRNEVE 76 (370)
T ss_dssp CSEEEEETTG---GGGHHHHHTTTC-SEEEEEECHHHH---HHTHHHHHHHHHTTT-CEEEE-EECCSSC----BHHHHH
T ss_pred CCeEEECcCH---HHHHHHHHHHcC-CeEEEEEChHHH---HHHHHHHHHHHHHcC-CeEEE-EeeCCCC----CHHHHH
Confidence 4545555553 234667777778 899999976543 335788888898888 87743 2233322 445677
Q ss_pred HHHHHhhcCCCeEEEEEcC--CHHHHHHHHH
Q 008863 222 GELKKVQDKQSRVFIVLQA--SLDMTIHLFT 250 (550)
Q Consensus 222 ~~l~~i~~~~~~~ii~~~~--~~~~~~~il~ 250 (550)
..++.+++.++|.||- .+ +.-++..++.
T Consensus 77 ~~~~~~~~~~~d~IIa-vGGGsv~D~aK~iA 106 (370)
T 1jq5_A 77 RIANIARKAEAAIVIG-VGGGKTLDTAKAVA 106 (370)
T ss_dssp HHHHHHHHTTCSEEEE-EESHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCEEEE-eCChHHHHHHHHHH
Confidence 7888888889999986 33 3345555555
No 182
>4h31_A Otcase, ornithine carbamoyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PE5; 1.70A {Vibrio vulnificus} PDB: 3upd_A*
Probab=59.02 E-value=70 Score=30.13 Aligned_cols=160 Identities=12% Similarity=0.122 Sum_probs=85.4
Q ss_pred EEEEEEecCCccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhc-CCeEEEEcCCChHHHHHHH
Q 008863 36 KIGAIVDANSQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINK-EKVKVIAGMETWEETAVVA 114 (550)
Q Consensus 36 ~IG~i~~~~~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~-~~v~aiiG~~~s~~~~~v~ 114 (550)
.|+.+|...+ .+....|+.|+.++ ++..+.+...++.-.-.+.+....+.++. -.+.++=.+ . ...+.
T Consensus 72 ~la~lF~epS---TRTR~SFE~A~~~L----Gg~vi~l~~~~ss~~kgEsl~DTarvLs~~~D~IviR~~-~---~~~~~ 140 (358)
T 4h31_A 72 NIALIFEKAS---TRTRCAFEVAAFDQ----GAQVTYIGPSGSQIGDKESMKDTARVLGRMYDGIQYRGF-G---QAIVE 140 (358)
T ss_dssp EEEEEESSCC---SHHHHHHHHHHHHT----TCEEEEECSSSSCBTTTBCHHHHHHHHHHHCSEEEEECS-C---HHHHH
T ss_pred EEEEEeCCCC---hhhHHHHHHHHHHc----CCeEEECCcccccccCccchhHHHHHhhccCceeEeccc-c---hhHHH
Confidence 5788886653 58889999999998 45555443333321111222222233322 123333333 2 23345
Q ss_pred HhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHH---HcCC-----eEEEEEEEcCCCCCcchhH
Q 008863 115 EIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLAR---KYNW-----RRVAAIYEDNVYGGDSGKL 186 (550)
Q Consensus 115 ~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~---~~~w-----~~v~ii~~~~~~g~~~~~~ 186 (550)
.++....+|+|. +-+ + .. . -.++++|++. ++++ .+|+++.+- . ...+
T Consensus 141 ~la~~s~vPVIN-G~g--~-----~~-------H-----PtQaL~Dl~Ti~e~~~~~~l~gl~ia~vGD~--~---~~va 195 (358)
T 4h31_A 141 ELGAFAGVPVWN-GLT--D-----EF-------H-----PTQILADFLTMLEHSQGKALADIQFAYLGDA--R---NNVG 195 (358)
T ss_dssp HHHHHSSSCEEE-SCC--S-----SC-------C-----HHHHHHHHHHHHHTTTTCCGGGCEEEEESCT--T---SHHH
T ss_pred HhhhhccCceEC-CCC--c-----CC-------C-----chHHHHHHHHHHHHhcCCCcCceEEEecCCC--C---cccc
Confidence 566778899998 333 1 11 2 2478888763 4553 366666542 1 2467
Q ss_pred HHHHHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhh-cCCCeEEEE
Q 008863 187 ALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQ-DKQSRVFIV 237 (550)
Q Consensus 187 ~~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~-~~~~~~ii~ 237 (550)
..+...+...| ..+.... |..- ....++...++++. +.+.++.+.
T Consensus 196 ~S~~~~~~~~g-~~v~~~~--P~~~---~p~~~~~~~~~~~~~~~g~~v~~~ 241 (358)
T 4h31_A 196 NSLMVGAAKMG-MDIRLVG--PQAY---WPDEELVAACQAIAKQTGGKITLT 241 (358)
T ss_dssp HHHHHHHHHHT-CEEEEES--CGGG---SCCHHHHHHHHHHHHHHTCEEEEE
T ss_pred hHHHHHHHhcC-ceEEEeC--Cccc---CCCHHHHHHHHHHHHHcCCcceec
Confidence 78888888888 7765432 2111 12245555555443 335555554
No 183
>4ep1_A Otcase, ornithine carbamoyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; 3.25A {Bacillus anthracis}
Probab=58.90 E-value=69 Score=29.87 Aligned_cols=132 Identities=15% Similarity=0.192 Sum_probs=73.5
Q ss_pred EEEEEEEecCCccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhc-CCeEEEEcCCChHHHHHH
Q 008863 35 TKIGAIVDANSQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINK-EKVKVIAGMETWEETAVV 113 (550)
Q Consensus 35 i~IG~i~~~~~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~-~~v~aiiG~~~s~~~~~v 113 (550)
-.|+.+|...+ .+...+|+.|+.++ ++..+.+...++.-.-.+.+....+.++. -.+.++=.+ .. ..+
T Consensus 71 K~la~lF~epS---TRTR~SFE~A~~~L----Gg~vi~l~~~~ss~~kgEsl~DTarvLs~y~D~IviR~~-~~---~~~ 139 (340)
T 4ep1_A 71 KILGLIFDKHS---TRTRVSFEAGMVQL----GGHGMFLNGKEMQMGRGETVSDTAKVLSHYIDGIMIRTF-SH---ADV 139 (340)
T ss_dssp CEEEEEESSCC---HHHHHHHHHHHHHT----TCEEEEEESCC------CCTTHHHHHHHHHCSEEEEECS-CH---HHH
T ss_pred ceEEEEecCCC---ccHHHHHHHHHHHc----CCeEEEcCcccccCCCCCCHHHHHHHHHHhCCEEEEecC-Ch---hHH
Confidence 36888887663 68889999999998 45565554333221111222222222221 123333333 22 334
Q ss_pred HHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHH---HHcC---CeEEEEEEEcCCCCCcchhHH
Q 008863 114 AEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLA---RKYN---WRRVAAIYEDNVYGGDSGKLA 187 (550)
Q Consensus 114 ~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l---~~~~---w~~v~ii~~~~~~g~~~~~~~ 187 (550)
..++...++|+|..+.. .. . -.++++|++ +++| ..+|+++.+- ...+.
T Consensus 140 ~~lA~~~~vPVINag~~--------~~-------H-----PtQaLaDl~TI~E~~G~l~glkva~vGD~------~nva~ 193 (340)
T 4ep1_A 140 EELAKESSIPVINGLTD--------DH-------H-----PCQALADLMTIYEETNTFKGIKLAYVGDG------NNVCH 193 (340)
T ss_dssp HHHHHHCSSCEEEEECS--------SC-------C-----HHHHHHHHHHHHHHHSCCTTCEEEEESCC------CHHHH
T ss_pred HHHHHhCCCCEEeCCCC--------CC-------C-----cHHHHHHHHHHHHHhCCCCCCEEEEECCC------chhHH
Confidence 45566678999985532 11 1 246777765 3443 4678777542 34677
Q ss_pred HHHHHHhcCCCeEEEEE
Q 008863 188 LLAEALQNVSSSEIQSR 204 (550)
Q Consensus 188 ~l~~~l~~~g~~~v~~~ 204 (550)
.+...+...| .++...
T Consensus 194 Sl~~~~~~~G-~~v~~~ 209 (340)
T 4ep1_A 194 SLLLASAKVG-MHMTVA 209 (340)
T ss_dssp HHHHHHHHHT-CEEEEE
T ss_pred HHHHHHHHcC-CEEEEE
Confidence 8888888888 776543
No 184
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=58.88 E-value=40 Score=30.29 Aligned_cols=80 Identities=6% Similarity=0.083 Sum_probs=56.0
Q ss_pred eEEEEEEEcC--CCCCcchhHHHHHHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcCCCeEEEEEcCCHHHH
Q 008863 168 RRVAAIYEDN--VYGGDSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMT 245 (550)
Q Consensus 168 ~~v~ii~~~~--~~g~~~~~~~~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~~ii~~~~~~~~~ 245 (550)
++|+++..+. .|. ....+.+.+.+++.| ..+..... .. +.......++.+...+.|.||+........
T Consensus 6 ~~Ig~i~~~~~~~~~--~~~~~gi~~~a~~~g-~~~~~~~~-~~------~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~ 75 (291)
T 3l49_A 6 KTIGITAIGTDHDWD--LKAYQAQIAEIERLG-GTAIALDA-GR------NDQTQVSQIQTLIAQKPDAIIEQLGNLDVL 75 (291)
T ss_dssp CEEEEEESCCSSHHH--HHHHHHHHHHHHHTT-CEEEEEEC-TT------CHHHHHHHHHHHHHHCCSEEEEESSCHHHH
T ss_pred cEEEEEeCCCCChHH--HHHHHHHHHHHHHcC-CEEEEEcC-CC------CHHHHHHHHHHHHHcCCCEEEEeCCChhhh
Confidence 5788888753 344 667788899999999 87765431 11 234456677777777899988834555667
Q ss_pred HHHHHHHHHcCC
Q 008863 246 IHLFTEANRMGL 257 (550)
Q Consensus 246 ~~il~~a~~~g~ 257 (550)
...++.+.+.|+
T Consensus 76 ~~~~~~~~~~~i 87 (291)
T 3l49_A 76 NPWLQKINDAGI 87 (291)
T ss_dssp HHHHHHHHHTTC
T ss_pred HHHHHHHHHCCC
Confidence 778888888876
No 185
>4a8t_A Putrescine carbamoyltransferase; trabnsferase PALO, delta-N-(phosphonoacetyl)-L- ornithine, agmatine deiminase route, agmatine catabolism; HET: PAO PGE; 1.59A {Enterococcus faecalis}
Probab=58.35 E-value=40 Score=31.49 Aligned_cols=129 Identities=10% Similarity=0.107 Sum_probs=75.4
Q ss_pred EEEEEEEecCCccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCC----CHHHHHHHHHHhhhcCCeEEEEcCCChHHH
Q 008863 35 TKIGAIVDANSQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNR----DPFQAATAAQELINKEKVKVIAGMETWEET 110 (550)
Q Consensus 35 i~IG~i~~~~~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~----~~~~a~~~~~~li~~~~v~aiiG~~~s~~~ 110 (550)
-.|+.+|...+ .+...+|+.|+.++ ++..+.+...++.- .....++....+ . .+.++=.+ ..
T Consensus 64 k~la~lF~e~S---TRTR~SFE~A~~~L----Gg~~i~l~~~~ssl~kgEsl~DTarvLs~~-~--D~IviR~~-~~--- 129 (339)
T 4a8t_A 64 KSLGMIFQQSS---TRTRVSFETAMEQL----GGHGEYLAPGQIQLGGHETIEDTSRVLSRL-V--DILMARVE-RH--- 129 (339)
T ss_dssp CEEEEEESSCC---SHHHHHHHHHHHHT----TCEEEEECCC-CCSSSSSCHHHHHHHHHHH-C--SEEEEECS-SH---
T ss_pred ceEEEEecCCC---chHHHHHHHHHHHc----CCeEEEeCcccccCCCCcCHHHHHHHHHHh-C--CEEEEecC-cH---
Confidence 46788887663 58889999999998 56566554333322 223333333333 1 23333333 22
Q ss_pred HHHHHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHH---HHc--C--C--eEEEEEEEcCCCCC
Q 008863 111 AVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLA---RKY--N--W--RRVAAIYEDNVYGG 181 (550)
Q Consensus 111 ~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l---~~~--~--w--~~v~ii~~~~~~g~ 181 (550)
..+..++...++|+|..+.. .. . -.++++|++ +++ | + .+|+++.+-
T Consensus 130 ~~~~~lA~~~~vPVINag~~--------~~-------H-----PtQaLaDl~Ti~e~~~~G~~l~glkva~vGD~----- 184 (339)
T 4a8t_A 130 HSIVDLANCATIPVINGMSD--------YN-------H-----PTQELGDLCTMVEHLPEGKKLEDCKVVFVGDA----- 184 (339)
T ss_dssp HHHHHHHHHCSSCEEECCCS--------SC-------C-----HHHHHHHHHHHHHTCCTTCCGGGCEEEEESSC-----
T ss_pred HHHHHHHHhCCCCEEECCCC--------Cc-------C-----cHHHHHHHHHHHHHhhcCCCCCCCEEEEECCC-----
Confidence 23444556678999985422 11 1 246777765 456 5 2 467766542
Q ss_pred cchhHHHHHHHHhcCCCeEEEEE
Q 008863 182 DSGKLALLAEALQNVSSSEIQSR 204 (550)
Q Consensus 182 ~~~~~~~l~~~l~~~g~~~v~~~ 204 (550)
...+..+...+...| .++...
T Consensus 185 -~rva~Sl~~~~~~~G-~~v~~~ 205 (339)
T 4a8t_A 185 -TQVCFSLGLITTKMG-MNFVHF 205 (339)
T ss_dssp -CHHHHHHHHHHHHTT-CEEEEE
T ss_pred -chhHHHHHHHHHHcC-CEEEEE
Confidence 346788888888888 776543
No 186
>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}
Probab=56.96 E-value=40 Score=29.93 Aligned_cols=123 Identities=8% Similarity=-0.029 Sum_probs=71.3
Q ss_pred CcEEEEEEEecC-CccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhc-CCeEEEEcCCChHHH
Q 008863 33 EVTKIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINK-EKVKVIAGMETWEET 110 (550)
Q Consensus 33 ~~i~IG~i~~~~-~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~-~~v~aiiG~~~s~~~ 110 (550)
+.-+||.+.... ......-..|++.++++. +|.++.. +.....+...+.+.+.+++.. .++.+|++... ..+
T Consensus 126 G~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~----~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d-~~a 199 (276)
T 3ksm_A 126 KERNIALLRLRAGNASTDQREQGFLDVLRKH----DKIRIIA-APYAGDDRGAARSEMLRLLKETPTIDGLFTPNE-STT 199 (276)
T ss_dssp SCEEEEECBCCTTCHHHHHHHHHHHHHHTTC----TTEEEEE-CCBCCSSHHHHHHHHHHHHHHCSCCCEEECCSH-HHH
T ss_pred CCceEEEEEcCCCchhHHHHHHHHHHHHHhC----CCcEEEE-EecCCCcHHHHHHHHHHHHHhCCCceEEEECCc-hhh
Confidence 356888887543 233445567887777543 4666653 334556777888888888865 36899997644 344
Q ss_pred HHHHHhhccCCcc----EEeccCCCCCCcccCCCCCeE-EEEecCcHHhHHHHHHHHH
Q 008863 111 AVVAEIASRVQVP----ILSFAAPAVTPLSMSRRWPYL-IRMASNDSEQMKCIADLAR 163 (550)
Q Consensus 111 ~~v~~~~~~~~iP----~is~~~~~~~~~~~~~~~~~~-~~~~p~~~~~~~al~~~l~ 163 (550)
..+...+.+.++| ++++... ......-..|.+ -.+..+...++...++++.
T Consensus 200 ~g~~~al~~~g~p~di~vig~d~~--~~~~~~~~~~~l~ttv~~~~~~~g~~a~~~l~ 255 (276)
T 3ksm_A 200 IGALVAIRQSGMSKQFGFIGFDQT--EELEAAMYAGEISNLVVQNPEYMGYLAVQRAL 255 (276)
T ss_dssp HHHHHHHHHTTCTTSSEEEEESCC--HHHHHHHHTTSSSEEEECCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHcCCCCCeEEEEeCCC--HHHHHHHHcCCceEEEEeCHHHhHHHHHHHHH
Confidence 4455555666654 6666544 111111111222 3455566667777666653
No 187
>3gd5_A Otcase, ornithine carbamoyltransferase; structural genomics, NYSGXRC, target 9454P, operon, amino-acid biosynthesis, ARGI biosynthesis; 2.10A {Gloeobacter violaceus}
Probab=56.41 E-value=1.2e+02 Score=27.91 Aligned_cols=132 Identities=12% Similarity=0.141 Sum_probs=75.1
Q ss_pred EEEEEEEecCCccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEc-CCChHHHHHH
Q 008863 35 TKIGAIVDANSQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAG-METWEETAVV 113 (550)
Q Consensus 35 i~IG~i~~~~~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG-~~~s~~~~~v 113 (550)
-.|+.+|...+ .+...+|+.|+.++ ++..+.+...++.-.-.+.+....+.++. -+.+|+- ..... .+
T Consensus 49 k~la~lF~e~S---TRTR~SFE~A~~~L----Gg~~i~l~~~~ss~~kgEsl~DTarvLs~-~~D~iviR~~~~~---~~ 117 (323)
T 3gd5_A 49 KVLGLVFLKAS---TRTRVSFTVAMYQL----GGQVIDLSPSNTQVGRGEPVRDTARVLGR-YVDGLAIRTFAQT---EL 117 (323)
T ss_dssp CEEEEEESSCC---HHHHHHHHHHHHHT----TCEEEEC----------CCHHHHHHHHTT-TCSEEEEECSSHH---HH
T ss_pred CEEEEEecCCC---cchHhhHHHHHHHc----CCeEEEeCcccccCCCCCCHHHHHHHHHH-hCCEEEEecCChh---HH
Confidence 46888887764 68889999999998 45566654444332223444444555553 2445542 22222 33
Q ss_pred HHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHH---HHc---CCeEEEEEEEcCCCCCcchhHH
Q 008863 114 AEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLA---RKY---NWRRVAAIYEDNVYGGDSGKLA 187 (550)
Q Consensus 114 ~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l---~~~---~w~~v~ii~~~~~~g~~~~~~~ 187 (550)
..++....+|+|..+.. .. . -.++++|++ +++ ...+|+++.+- ...+.
T Consensus 118 ~~lA~~~~vPVINag~~--------~~-------H-----PtQaLaDl~Ti~e~~g~l~glkva~vGD~------~rva~ 171 (323)
T 3gd5_A 118 EEYAHYAGIPVINALTD--------HE-------H-----PCQVVADLLTIRENFGRLAGLKLAYVGDG------NNVAH 171 (323)
T ss_dssp HHHHHHHCSCEEEEECS--------SC-------C-----HHHHHHHHHHHHHHHSCCTTCEEEEESCC------CHHHH
T ss_pred HHHHHhCCCCEEeCCCC--------CC-------C-----cHHHHHHHHHHHHHhCCCCCCEEEEECCC------CcHHH
Confidence 44556668999986532 11 1 246777765 344 34678777643 24567
Q ss_pred HHHHHHhcCCCeEEEEE
Q 008863 188 LLAEALQNVSSSEIQSR 204 (550)
Q Consensus 188 ~l~~~l~~~g~~~v~~~ 204 (550)
.+...+...| +++...
T Consensus 172 Sl~~~~~~~G-~~v~~~ 187 (323)
T 3gd5_A 172 SLLLGCAKVG-MSIAVA 187 (323)
T ss_dssp HHHHHHHHHT-CEEEEE
T ss_pred HHHHHHHHcC-CEEEEE
Confidence 7777778788 776543
No 188
>2qh8_A Uncharacterized protein; conserved domain protein, structural genomics, PSI-2, MCSG, BIG_563.1, protein structure initiative; HET: HIS; 2.20A {Vibrio cholerae o1 biovar eltor str} PDB: 3lkv_A*
Probab=56.06 E-value=53 Score=29.82 Aligned_cols=113 Identities=14% Similarity=0.114 Sum_probs=67.0
Q ss_pred EEEEEEEecCCccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEcCCChHHH---H
Q 008863 35 TKIGAIVDANSQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEET---A 111 (550)
Q Consensus 35 i~IG~i~~~~~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~~~---~ 111 (550)
=+||++...+...+.....+++.|+++. |.++......+ .....+.+.+++ +++.||+.+...... .
T Consensus 141 ~~I~~i~~~~~~~~~~r~~g~~~al~~~-----gi~~~~~~~~~---~~~~~~~~~~l~--~~~dai~~~~D~~a~g~~~ 210 (302)
T 2qh8_A 141 KSIGVVYNPGEANAVSLMELLKLSAAKH-----GIKLVEATALK---SADVQSATQAIA--EKSDVIYALIDNTVASAIE 210 (302)
T ss_dssp CEEEEEECTTCHHHHHHHHHHHHHHHHT-----TCEEEEEECSS---GGGHHHHHHHHG--GGCSEEEECSCHHHHTTHH
T ss_pred cEEEEEecCCCcchHHHHHHHHHHHHHc-----CCEEEEEecCC---hHHHHHHHHHHh--ccCCEEEECCcHhHHHHHH
Confidence 4788887654323445567787777764 55655443332 233445556665 367888876554332 2
Q ss_pred HHHHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHH
Q 008863 112 VVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARK 164 (550)
Q Consensus 112 ~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~ 164 (550)
++...+...++|++++... + ... |-+..+..+...+++..++++.+
T Consensus 211 ~l~~~~~~~~i~vig~d~~---~-~~~---~~Lttv~~~~~~~G~~Aa~~l~~ 256 (302)
T 2qh8_A 211 GMIVAANQAKTPVFGAATS---Y-VER---GAIASLGFDYYQIGVQTADYVAA 256 (302)
T ss_dssp HHHHHHHHTTCCEEESSHH---H-HHT---TCSEEEECCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCEEECCHH---H-HhC---CcEEEEeCCHHHHHHHHHHHHHH
Confidence 3444555689999986532 1 111 44556677888888887777643
No 189
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=56.02 E-value=37 Score=30.54 Aligned_cols=82 Identities=7% Similarity=0.038 Sum_probs=55.0
Q ss_pred CCeEEEEEEEcC--CCCCcchhHHHHHHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcCCCeEEEEEcCCHH
Q 008863 166 NWRRVAAIYEDN--VYGGDSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLD 243 (550)
Q Consensus 166 ~w~~v~ii~~~~--~~g~~~~~~~~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~~ii~~~~~~~ 243 (550)
+-++|+++..+. .|. ....+.+.+.+.+.| ..+..... .. +.......++.+.+.+.+.||+......
T Consensus 7 ~~~~Ig~i~~~~~~~~~--~~~~~gi~~~a~~~g-~~~~~~~~-~~------~~~~~~~~~~~l~~~~vdgiI~~~~~~~ 76 (293)
T 3l6u_A 7 KRNIVGFTIVNDKHEFA--QRLINAFKAEAKANK-YEALVATS-QN------SRISEREQILEFVHLKVDAIFITTLDDV 76 (293)
T ss_dssp --CEEEEEESCSCSHHH--HHHHHHHHHHHHHTT-CEEEEEEC-SS------CHHHHHHHHHHHHHTTCSEEEEECSCTT
T ss_pred CCcEEEEEEecCCcHHH--HHHHHHHHHHHHHcC-CEEEEECC-CC------CHHHHHHHHHHHHHcCCCEEEEecCChH
Confidence 346788888753 354 667788888999999 87765431 11 2344556777888888998888445555
Q ss_pred HHHHHHHHHHHcCC
Q 008863 244 MTIHLFTEANRMGL 257 (550)
Q Consensus 244 ~~~~il~~a~~~g~ 257 (550)
.....++.+.+.|+
T Consensus 77 ~~~~~~~~~~~~~i 90 (293)
T 3l6u_A 77 YIGSAIEEAKKAGI 90 (293)
T ss_dssp TTHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHcCC
Confidence 55577888887775
No 190
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=55.80 E-value=4.4 Score=35.36 Aligned_cols=40 Identities=15% Similarity=0.161 Sum_probs=31.5
Q ss_pred HHHhhhcCCeEEEEcCCChHHHHHHHHhhccCCccEEecc
Q 008863 89 AQELINKEKVKVIAGMETWEETAVVAEIASRVQVPILSFA 128 (550)
Q Consensus 89 ~~~li~~~~v~aiiG~~~s~~~~~v~~~~~~~~iP~is~~ 128 (550)
+.+-+.+.++..|+||..|+=......+++.+++|+|+.+
T Consensus 22 ~~~~~~k~kiI~llGpPGsGKgTqa~~L~~~~g~~hIstG 61 (217)
T 3umf_A 22 TDQKLAKAKVIFVLGGPGSGKGTQCEKLVQKFHFNHLSSG 61 (217)
T ss_dssp --CCTTSCEEEEEECCTTCCHHHHHHHHHHHHCCEEECHH
T ss_pred cchhccCCcEEEEECCCCCCHHHHHHHHHHHHCCceEcHH
Confidence 3344455789999999988887778889999999999864
No 191
>3grf_A Ornithine carbamoyltransferase; ornithine transcarbamoylase, arginine degradation pathway, giardia lamblia, drug target; 2.00A {Giardia intestinalis}
Probab=55.62 E-value=59 Score=30.18 Aligned_cols=131 Identities=14% Similarity=0.171 Sum_probs=75.0
Q ss_pred EEEEEEEecCCccchhHHHHHHHHHHHHhcCCCCcEEE--EEEecCCCCHHHHHHHHHHhhhcCCeEEEEc-CCChHHHH
Q 008863 35 TKIGAIVDANSQMGKQAITAMKIAVQNFNSDSRNHKLS--LQIRDHNRDPFQAATAAQELINKEKVKVIAG-METWEETA 111 (550)
Q Consensus 35 i~IG~i~~~~~~~g~~~~~a~~~Av~~iN~~~~~~~l~--~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG-~~~s~~~~ 111 (550)
-.|+.+|...+ .+...+|+.|+.++ ++..+. +.. ++.-.-.+.+....+.++. -+.+|+- .... .
T Consensus 45 k~la~lF~e~S---TRTR~SFE~A~~~L----Gg~~i~~~l~~-~ss~~kgEsl~DTarvls~-~~D~iviR~~~~---~ 112 (328)
T 3grf_A 45 KTLLAFFAKPS---LRTRVSLETAMTRL----GGHAIYYELGA-NSNVGGKETVQDTAEVFSR-MVDICTARLATK---E 112 (328)
T ss_dssp CEEEEEESSCC---HHHHHHHHHHHHHH----TCEEEEEEC-----------CHHHHHHHHTT-TCSEEEEECSSH---H
T ss_pred CEEEEEecCCC---chHHHHHHHHHHHC----CCeEEccccCc-cccCCCCCCHHHHHHHHHh-hCCEEEEecCCh---h
Confidence 46888887663 68889999999999 565665 544 4433334455555555553 2444442 2222 3
Q ss_pred HHHHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHH---HHcC----------CeEEEEEEEcCC
Q 008863 112 VVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLA---RKYN----------WRRVAAIYEDNV 178 (550)
Q Consensus 112 ~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l---~~~~----------w~~v~ii~~~~~ 178 (550)
.+..++...++|+|..+.. .. +| .++++|++ +++| ..+++++.+-
T Consensus 113 ~~~~lA~~~~vPVINag~~--------~~-------HP-----tQaLaDl~Ti~e~~g~~~~~~~~l~gl~va~vGD~-- 170 (328)
T 3grf_A 113 MMREMAQHASVPCINALDD--------FG-------HP-----LQMVCDFMTIKEKFTAAGEFSNGFKGIKFAYCGDS-- 170 (328)
T ss_dssp HHHHHHHHCSSCEEESSCS--------SC-------CH-----HHHHHHHHHHHHHHHHTTCCTTTGGGCCEEEESCC--
T ss_pred HHHHHHHhCCCCEEeCCCC--------CC-------Cc-----HHHHHHHHHHHHHhCCccccccccCCcEEEEeCCC--
Confidence 3445566678999985532 11 12 46777764 4455 2467776542
Q ss_pred CCCcchhHHHHHHHHhcCCCeEEEE
Q 008863 179 YGGDSGKLALLAEALQNVSSSEIQS 203 (550)
Q Consensus 179 ~g~~~~~~~~l~~~l~~~g~~~v~~ 203 (550)
. ...+..+...+...| .++..
T Consensus 171 ~---~~va~Sl~~~~~~~G-~~v~~ 191 (328)
T 3grf_A 171 M---NNVTYDLMRGCALLG-MECHV 191 (328)
T ss_dssp S---SHHHHHHHHHHHHHT-CEEEE
T ss_pred C---cchHHHHHHHHHHcC-CEEEE
Confidence 1 236777888888888 76654
No 192
>3hl0_A Maleylacetate reductase; structur genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE NAD EPE; 1.60A {Agrobacterium tumefaciens str}
Probab=54.96 E-value=19 Score=34.09 Aligned_cols=84 Identities=11% Similarity=0.096 Sum_probs=55.3
Q ss_pred HHHHHHHHHHcCCeEEEEEEEcCCCCCcchhHHHHHHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcCCCeE
Q 008863 155 MKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRV 234 (550)
Q Consensus 155 ~~al~~~l~~~~w~~v~ii~~~~~~g~~~~~~~~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~~ 234 (550)
...+.++++.++.+++.+|++... ....+.+.+.+++.+ +.+ +. .+.+.. ..+...+.++.+++.++|.
T Consensus 22 ~~~l~~~l~~~g~~r~liVtd~~~----~~~~~~v~~~L~~~~-~~v-~~-~v~~~p----~~~~v~~~~~~~~~~~~D~ 90 (353)
T 3hl0_A 22 SADVAEEIRRLGLSRALVLSTPQQ----KGDAEALASRLGRLA-AGV-FS-EAAMHT----PVEVTKTAVEAYRAAGADC 90 (353)
T ss_dssp GGGHHHHHHHTTCCCEEEECCGGG----HHHHHHHHHHHGGGE-EEE-EC-CCCTTC----BHHHHHHHHHHHHHTTCSE
T ss_pred HHHHHHHHHHhCCCEEEEEecCch----hhHHHHHHHHHhhCC-cEE-ec-CcCCCC----cHHHHHHHHHHHhccCCCE
Confidence 345778888899999999997654 335788888888766 543 21 122221 4456778888888889999
Q ss_pred EEEEcCCHH--HHHHHHH
Q 008863 235 FIVLQASLD--MTIHLFT 250 (550)
Q Consensus 235 ii~~~~~~~--~~~~il~ 250 (550)
||- .+.+. ++..++.
T Consensus 91 IIa-vGGGs~iD~aK~iA 107 (353)
T 3hl0_A 91 VVS-LGGGSTTGLGKAIA 107 (353)
T ss_dssp EEE-EESHHHHHHHHHHH
T ss_pred EEE-eCCcHHHHHHHHHH
Confidence 887 44443 3344443
No 193
>2i6u_A Otcase, ornithine carbamoyltransferase; X-RAY crystallography, ornithine carbamyoltransferase, carbamoyl phosphate, L- norvaline; 2.20A {Mycobacterium tuberculosis} PDB: 2p2g_A
Probab=54.96 E-value=64 Score=29.65 Aligned_cols=133 Identities=13% Similarity=0.141 Sum_probs=77.4
Q ss_pred EEEEEEEecCCccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEc-CCChHHHHHH
Q 008863 35 TKIGAIVDANSQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAG-METWEETAVV 113 (550)
Q Consensus 35 i~IG~i~~~~~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG-~~~s~~~~~v 113 (550)
-.|+.+|-..+ .+....|+.|..++ +|..+.+...++.-.-.+.+....+.++.- +.+|+- ...... +
T Consensus 40 k~l~~lF~e~S---TRTR~SFe~A~~~L----Gg~~i~l~~~~ss~~kgEsl~DTarvls~~-~D~iviR~~~~~~---~ 108 (307)
T 2i6u_A 40 RGVAVIFDKNS---TRTRFSFELGIAQL----GGHAVVVDSGSTQLGRDETLQDTAKVLSRY-VDAIVWRTFGQER---L 108 (307)
T ss_dssp CEEEEEESSCC---SHHHHHHHHHHHHT----TCEEEEEEGGGSGGGGTCCHHHHHHHHHHH-EEEEEEECSSHHH---H
T ss_pred CEEEEEecCCC---cchHHHHHHHHHHc----CCeEEEECCccccCCCCCCHHHHHHHHHHh-CCEEEEecCChhH---H
Confidence 46788886653 58889999999999 566666654443322222333333333321 333332 222333 4
Q ss_pred HHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHH---HHcC---CeEEEEEEEcCCCCCcchhHH
Q 008863 114 AEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLA---RKYN---WRRVAAIYEDNVYGGDSGKLA 187 (550)
Q Consensus 114 ~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l---~~~~---w~~v~ii~~~~~~g~~~~~~~ 187 (550)
..++...++|+|..+.. .. + -.++++|++ +++| -.+++++.+. . ...+.
T Consensus 109 ~~lA~~~~vPVINa~~~--------~~-------H-----PtQaLaDl~Ti~e~~g~l~gl~va~vGD~--~---~rva~ 163 (307)
T 2i6u_A 109 DAMASVATVPVINALSD--------EF-------H-----PCQVLADLQTIAERKGALRGLRLSYFGDG--A---NNMAH 163 (307)
T ss_dssp HHHHHHCSSCEEESCCS--------SC-------C-----HHHHHHHHHHHHHHHSCCTTCEEEEESCT--T---SHHHH
T ss_pred HHHHhhCCCCEEcCCCC--------Cc-------C-----ccHHHHHHHHHHHHhCCcCCeEEEEECCC--C---cCcHH
Confidence 44556668999994421 11 1 246777775 3444 3477777653 2 35678
Q ss_pred HHHHHHhcCCCeEEEEE
Q 008863 188 LLAEALQNVSSSEIQSR 204 (550)
Q Consensus 188 ~l~~~l~~~g~~~v~~~ 204 (550)
.+...+...| .++...
T Consensus 164 Sl~~~~~~~g-~~v~~~ 179 (307)
T 2i6u_A 164 SLLLGGVTAG-IHVTVA 179 (307)
T ss_dssp HHHHHHHHTT-CEEEEE
T ss_pred HHHHHHHHCC-CEEEEE
Confidence 8888888889 877653
No 194
>4dz1_A DALS D-alanine transporter; D-alanine binding, periplasmic, transport protein; 1.90A {Salmonella enterica} PDB: 3r39_A 4f3s_A
Probab=54.64 E-value=24 Score=31.19 Aligned_cols=19 Identities=0% Similarity=0.144 Sum_probs=15.4
Q ss_pred HHHHHHHHhhcCCCeEEEE
Q 008863 219 AVRGELKKVQDKQSRVFIV 237 (550)
Q Consensus 219 d~~~~l~~i~~~~~~~ii~ 237 (550)
+....++.+.+.+.|+++.
T Consensus 172 ~~~~~~~~l~~G~vDa~~~ 190 (259)
T 4dz1_A 172 TYNETMADLKNGNLDLAFI 190 (259)
T ss_dssp SHHHHHHHHHHTSCSEEEE
T ss_pred CHHHHHHHHHcCCCCEEEe
Confidence 4456788888889999998
No 195
>4edp_A ABC transporter, substrate-binding protein; clostridium PERF ATCC 13124, center for structural genomics of infectious DI csgid; 1.85A {Clostridium perfringens}
Probab=54.20 E-value=5.9 Score=37.23 Aligned_cols=35 Identities=9% Similarity=0.122 Sum_probs=20.4
Q ss_pred CcEEEEEEEecCCccchhHHHHHHHHHHHHhcCCCCcEEEEEE
Q 008863 33 EVTKIGAIVDANSQMGKQAITAMKIAVQNFNSDSRNHKLSLQI 75 (550)
Q Consensus 33 ~~i~IG~i~~~~~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~ 75 (550)
++|+|..- . ......++-.++++++.. |++|++..
T Consensus 35 ~~l~v~~~---~----~~~~~~~~~~~~~f~~~~-gi~V~~~~ 69 (351)
T 4edp_A 35 KKLVVSTW---G----LNEDVLKETVFEPFAKEH-GVEIVLDI 69 (351)
T ss_dssp -CEEEEEC---C----TTHHHHHHHTHHHHHHHH-TCCEEEEE
T ss_pred CeEEEEEc---c----CcHHHHHHHHHHHHHHHH-CCEEEEEe
Confidence 57777432 1 123344555667777664 88888865
No 196
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=54.02 E-value=1.2e+02 Score=27.10 Aligned_cols=118 Identities=11% Similarity=0.091 Sum_probs=69.3
Q ss_pred EEEEEEEecC-CccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcC----CeEEEEcCCChHH
Q 008863 35 TKIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKE----KVKVIAGMETWEE 109 (550)
Q Consensus 35 i~IG~i~~~~-~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~----~v~aiiG~~~s~~ 109 (550)
=+||.+.... ......-..|++.|+++. |.++. +.....+...+.+.+.+++... .+.||+... ...
T Consensus 132 ~~I~~i~~~~~~~~~~~R~~Gf~~al~~~-----g~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ai~~~~-d~~ 203 (295)
T 3hcw_A 132 DELIFITEKGNFEVSKDRIQGFETVASQF-----NLDYQ--IIETSNEREVILNYMQNLHTRLKDPNIKQAIISLD-AML 203 (295)
T ss_dssp SEEEEEEESSCCHHHHHHHHHHHHHHHHT-----TCEEE--EEEECSCHHHHHHHHHHHHHHHTCTTSCEEEEESS-HHH
T ss_pred ccEEEEcCCccchhHHHHHHHHHHHHHHc-----CCCee--EEeccCCHHHHHHHHHHHHhhcccCCCCcEEEECC-hHH
Confidence 3688887554 223345568888888774 44555 2333456667777777777642 689999743 333
Q ss_pred HHHHHHhhccCC--cc----EEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHH
Q 008863 110 TAVVAEIASRVQ--VP----ILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARK 164 (550)
Q Consensus 110 ~~~v~~~~~~~~--iP----~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~ 164 (550)
+..+...+.+.+ || ++++... +. .....|-+-.+..+...+++..+++|..
T Consensus 204 A~g~~~al~~~g~~vP~di~vig~D~~---~~-~~~~~p~lttv~~~~~~~g~~a~~~l~~ 260 (295)
T 3hcw_A 204 HLAILSVLYELNIEIPKDVMTATFNDS---YL-TEIASPPQTCIDIKPRMLGQQAGSAILN 260 (295)
T ss_dssp HHHHHHHHHHTTCCTTTTEEEEEECCS---HH-HHTSSSCCEEEECCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCCceEEEEeCCh---hH-HhhCCCCeeEEEECHHHHHHHHHHHHHH
Confidence 444445555544 34 5665433 22 2222344556777777888887777643
No 197
>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} SCOP: c.93.1.1 PDB: 7abp_A* 6abp_A* 1abe_A* 1abf_A* 5abp_A* 1bap_A* 1apb_A* 9abp_A* 2wrz_A
Probab=53.59 E-value=38 Score=30.73 Aligned_cols=79 Identities=9% Similarity=0.161 Sum_probs=55.1
Q ss_pred eEEEEEEEcC--CCCCcchhHHHHHHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcCCCeEEEEEcCCHHHH
Q 008863 168 RRVAAIYEDN--VYGGDSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMT 245 (550)
Q Consensus 168 ~~v~ii~~~~--~~g~~~~~~~~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~~ii~~~~~~~~~ 245 (550)
.+++++..+. .|. ....+.+.+.+++.| ..+..... . +.......++.+.+.+.|.||+...+....
T Consensus 3 ~~Ig~i~~~~~~~~~--~~~~~gi~~~a~~~g-~~~~~~~~--~------~~~~~~~~i~~l~~~~vdgiii~~~~~~~~ 71 (306)
T 8abp_A 3 LKLGFLVKQPEEPWF--QTEWKFADKAGKDLG-FEVIKIAV--P------DGEKTLNAIDSLAASGAKGFVICTPDPKLG 71 (306)
T ss_dssp EEEEEEESCTTSHHH--HHHHHHHHHHHHHHT-EEEEEEEC--C------SHHHHHHHHHHHHHTTCCEEEEECSCGGGH
T ss_pred eEEEEEeCCCCchHH--HHHHHHHHHHHHHcC-CEEEEeCC--C------CHHHHHHHHHHHHHcCCCEEEEeCCCchhh
Confidence 3678887654 355 677788888899999 87754322 1 234556678888878899988844555566
Q ss_pred HHHHHHHHHcCC
Q 008863 246 IHLFTEANRMGL 257 (550)
Q Consensus 246 ~~il~~a~~~g~ 257 (550)
...++.+.+.|+
T Consensus 72 ~~~~~~~~~~~i 83 (306)
T 8abp_A 72 SAIVAKARGYDM 83 (306)
T ss_dssp HHHHHHHHHTTC
T ss_pred HHHHHHHHHCCC
Confidence 677888888776
No 198
>3jzd_A Iron-containing alcohol dehydrogenase; YP_298327.1, putative alcohol dehedrogenase, structural GENO joint center for structural genomics; HET: MSE NAD PG4 P6G PGE; 2.10A {Ralstonia eutropha}
Probab=53.56 E-value=21 Score=33.85 Aligned_cols=97 Identities=13% Similarity=0.064 Sum_probs=60.2
Q ss_pred HHHHHHHHHcCCeEEEEEEEcCCCCCcchhHHHHHHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcCCCeEE
Q 008863 156 KCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVF 235 (550)
Q Consensus 156 ~al~~~l~~~~w~~v~ii~~~~~~g~~~~~~~~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~~i 235 (550)
..+.++++.++.+++.+|++.... ...+.+.+.+++.+ +.+ +.. +.+.. ..+...+.++.+++.++|.|
T Consensus 25 ~~l~~~l~~~g~~r~liVtd~~~~----~~~~~v~~~L~~~~-~~~-f~~-v~~~p----~~~~v~~~~~~~~~~~~D~I 93 (358)
T 3jzd_A 25 SQVAAEVERLGAKRALVLCTPNQQ----AEAERIADLLGPLS-AGV-YAG-AVMHV----PIESARDATARAREAGADCA 93 (358)
T ss_dssp GGHHHHHHHTTCSCEEEECCGGGH----HHHHHHHHHHGGGE-EEE-ECC-CCTTC----BHHHHHHHHHHHHHHTCSEE
T ss_pred HHHHHHHHHhCCCeEEEEeCCcHH----HHHHHHHHHhccCC-EEE-ecC-CcCCC----CHHHHHHHHHHhhccCCCEE
Confidence 456778888999999999976543 35678888888766 433 211 22221 44567777888888899988
Q ss_pred EEEcCCHH--HHHHHHHHHHHcCCCCCCEEEEEecc
Q 008863 236 IVLQASLD--MTIHLFTEANRMGLVGKDSVWIVTNT 269 (550)
Q Consensus 236 i~~~~~~~--~~~~il~~a~~~g~~~~~~~~i~~~~ 269 (550)
|- .+.+. ++..++... .+ ..++-|.|..
T Consensus 94 Ia-vGGGsviD~aK~iA~~--~~---~p~i~IPTT~ 123 (358)
T 3jzd_A 94 VA-VGGGSTTGLGKAIALE--TG---MPIVAIPTTY 123 (358)
T ss_dssp EE-EESHHHHHHHHHHHHH--HC---CCEEEEECSS
T ss_pred EE-eCCcHHHHHHHHHHhc--cC---CCEEEEeCCc
Confidence 87 44443 344444332 22 2345555553
No 199
>3gyb_A Transcriptional regulators (LACI-family transcriptional regulatory protein); protein structure initiative II(PSI II), nysgxrc; 1.60A {Corynebacterium glutamicum}
Probab=53.49 E-value=43 Score=29.87 Aligned_cols=118 Identities=14% Similarity=0.093 Sum_probs=70.3
Q ss_pred EEEEEEEecCCccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhc-CCeEEEEcCCChHHHHHH
Q 008863 35 TKIGAIVDANSQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINK-EKVKVIAGMETWEETAVV 113 (550)
Q Consensus 35 i~IG~i~~~~~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~-~~v~aiiG~~~s~~~~~v 113 (550)
-+|+++...... ...-..|++.++++.+ .++...+.....+...+.+.+.+++.. ..+.+|+..... .+..+
T Consensus 119 ~~i~~i~~~~~~-~~~R~~gf~~~l~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~-~a~g~ 191 (280)
T 3gyb_A 119 THIAHLRVGSGA-GLRRFESFEATMRAHG-----LEPLSNDYLGPAVEHAGYTETLALLKEHPEVTAIFSSNDI-TAIGA 191 (280)
T ss_dssp CSEEEECCSSHH-HHHHHHHHHHHHHHTT-----CCCEECCCCSCCCHHHHHHHHHHHHHHCTTCCEEEESSHH-HHHHH
T ss_pred CeEEEEeCCCch-HHHHHHHHHHHHHHcC-----cCCCcccccCCCCHHHHHHHHHHHHhCCCCCCEEEECChH-HHHHH
Confidence 367888766544 5566688888887753 233322345566777888888888864 468899976443 33333
Q ss_pred HHhhccC------CccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHH
Q 008863 114 AEIASRV------QVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLAR 163 (550)
Q Consensus 114 ~~~~~~~------~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~ 163 (550)
...+.+. ++.++++... +.. ....|-+-.+..+...++...+++|.
T Consensus 192 ~~al~~~g~~vP~di~vvg~d~~---~~~-~~~~p~lttv~~~~~~~g~~av~~l~ 243 (280)
T 3gyb_A 192 LGAARELGLRVPEDLSIIGYDNT---PLA-QTRLINLTTIDDNSIGVGYNAALLLL 243 (280)
T ss_dssp HHHHHHHTCCTTTTCEEEEESCC---HHH-HSTTTCCCEEECCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCCCeeEEEEECCc---hHh-hccCCCceEEecCHHHHHHHHHHHHH
Confidence 3444333 3447776654 221 12224445566677777777777664
No 200
>1p99_A Hypothetical protein PG110; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.70A {Staphylococcus aureus subsp} SCOP: c.94.1.1
Probab=53.45 E-value=16 Score=33.49 Aligned_cols=45 Identities=13% Similarity=0.180 Sum_probs=27.5
Q ss_pred CCcEEEEEEEecCCccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHH
Q 008863 32 EEVTKIGAIVDANSQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAA 86 (550)
Q Consensus 32 ~~~i~IG~i~~~~~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~ 86 (550)
.++|+||.. ...+ .....+ .+.+-+. |++|+++.+++...+..|+
T Consensus 38 ~~~i~IG~~-~~~~----~~~~~~---~~~~~~~--G~~Ve~~~f~~~~~~~~AL 82 (295)
T 1p99_A 38 DKKVTIGVA-SNDT----KAWEKV---KELAKKD--DIDVEIKHFSDYNLPNKAL 82 (295)
T ss_dssp --CEEEEES-SSCC----HHHHHH---HHHHGGG--TCCEEEEECSSTTSHHHHH
T ss_pred CCeEEEEEe-CCcH----HHHHHH---HHHHHHc--CCeEEEEEeCChHHHHHHH
Confidence 357999998 4331 222222 2344343 8999999998877777655
No 201
>3cs3_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative; 2.40A {Enterococcus faecalis}
Probab=52.21 E-value=1.1e+02 Score=27.09 Aligned_cols=116 Identities=12% Similarity=0.102 Sum_probs=66.2
Q ss_pred EEEEEEecC-CccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhc--CCeEEEEcCCChHHHHH
Q 008863 36 KIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINK--EKVKVIAGMETWEETAV 112 (550)
Q Consensus 36 ~IG~i~~~~-~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~--~~v~aiiG~~~s~~~~~ 112 (550)
+|+++.... ......-..|++.++++. |.++. +.....+...+.+.+.+++.. .++.+|+.... ..+..
T Consensus 120 ~i~~i~~~~~~~~~~~R~~gf~~~l~~~-----g~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~ai~~~~d-~~a~g 191 (277)
T 3cs3_A 120 KVLLLSGPEKGYDSQERLAVSTRELTRF-----GIPYE--IIQGDFTEPSGYAAAKKILSQPQTEPVDVFAFND-EMAIG 191 (277)
T ss_dssp CEEEEECCTTSHHHHHHHHHHHHHHHHT-----TCCEE--EEECCSSHHHHHHHHHHHTTSCCCSSEEEEESSH-HHHHH
T ss_pred eEEEEeCCccCccHHHHHHHHHHHHHHc-----CCCee--EEeCCCChhHHHHHHHHHHhcCCCCCcEEEEcCh-HHHHH
Confidence 577776543 222345567888888774 34444 334445677777888888864 47899997543 33444
Q ss_pred HHHhhccCC--cc----EEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHH
Q 008863 113 VAEIASRVQ--VP----ILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLAR 163 (550)
Q Consensus 113 v~~~~~~~~--iP----~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~ 163 (550)
+...+.+.+ +| ++++... +.... ..|.+-.+..+...++...+++|.
T Consensus 192 ~~~al~~~g~~vP~di~vvg~d~~---~~~~~-~~p~lttv~~~~~~~g~~a~~~l~ 244 (277)
T 3cs3_A 192 VYKYVAETNYQMGKDIRIIGFDNS---ELGAF-VQPRLATIAYSKHRWGMVAAEKII 244 (277)
T ss_dssp HHHHHTTSSCCBTTTEEEECSSCC---HHHHH-SSSCCBEEECCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCCcEEEEEeCCc---HHHhc-cCCceeEEecCHHHHHHHHHHHHH
Confidence 455555544 34 5554433 22111 123344556666677777666653
No 202
>3lft_A Uncharacterized protein; ABC, ATPase, cassette, L-Trp, PSI, MCSG, structural genomics center for structural genomics; HET: MSE TRP; 1.35A {Streptococcus pneumoniae}
Probab=51.51 E-value=97 Score=27.87 Aligned_cols=113 Identities=12% Similarity=0.062 Sum_probs=65.8
Q ss_pred EEEEEEEecCCccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEcCCChHHHH---
Q 008863 35 TKIGAIVDANSQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEETA--- 111 (550)
Q Consensus 35 i~IG~i~~~~~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~~~~--- 111 (550)
=+||++...+...+.....+++-|+++. |.++......+ .....+.+.+++ +++.||+.+.......
T Consensus 134 ~~I~~i~~~~~~~~~~r~~g~~~al~~~-----gi~~~~~~~~~---~~~~~~~~~~l~--~~~dai~~~~D~~a~g~~~ 203 (295)
T 3lft_A 134 KTIGALYSSSEDNSKTQVEEFKAYAEKA-----GLTVETFAVPS---TNEIASTVTVMT--SKVDAIWVPIDNTIASGFP 203 (295)
T ss_dssp CEEEEEEETTCHHHHHHHHHHHHHHHHT-----TCEEEEEEESS---GGGHHHHHHHHT--TTCSEEEECSCHHHHHTHH
T ss_pred cEEEEEeCCCCcchHHHHHHHHHHHHHc-----CCEEEEEecCC---HHHHHHHHHHHH--hcCCEEEECCchhHHHHHH
Confidence 4788887665322344557777777664 55555443322 223445555565 3788888765544332
Q ss_pred HHHHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHH
Q 008863 112 VVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARK 164 (550)
Q Consensus 112 ~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~ 164 (550)
++...+...++|++++... . ... +-+..+..+...+++..++++.+
T Consensus 204 ~l~~~~~~~~i~vig~d~~---~-~~~---~~Lttv~~~~~~~G~~Aa~~l~~ 249 (295)
T 3lft_A 204 TVVSSNQSSKKPIYPSATA---M-VEV---GGLASVVIDQHDLGVATGKMIVQ 249 (295)
T ss_dssp HHHHHTTTTCCCEEESSHH---H-HTT---TCCEEEECCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCEEeCCHH---H-Hhc---CcEEEEecCHHHHHHHHHHHHHH
Confidence 3444555678999986532 1 111 23456677778888887777643
No 203
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=51.33 E-value=1.3e+02 Score=26.44 Aligned_cols=118 Identities=12% Similarity=0.015 Sum_probs=69.6
Q ss_pred EEEEEEEecC-CccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcC--CeEEEEcCCChHHHH
Q 008863 35 TKIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKE--KVKVIAGMETWEETA 111 (550)
Q Consensus 35 i~IG~i~~~~-~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~--~v~aiiG~~~s~~~~ 111 (550)
=+|+.+.... ......-..|++.++++. |.++... .....+...+.+.+.+++... .+.+|+.... ..+.
T Consensus 121 ~~i~~i~~~~~~~~~~~R~~gf~~~l~~~-----~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~ai~~~~d-~~a~ 193 (272)
T 3o74_A 121 RSIALIGARPELSVSQARAGGFDEALQGY-----TGEVRRY-QGEAFSRECGQRLMQQLIDDLGGLPDALVTTSY-VLLQ 193 (272)
T ss_dssp SEEEEEEECTTSHHHHHHHHHHHHHTTTC-----CSEEEEE-EESSSSHHHHHHHHHHHHHHHTSCCSEEEESSH-HHHH
T ss_pred cEEEEEecCCCCccHHHHHHHHHHHHHHc-----CCChhee-ecCCCCHHHHHHHHHHHHhcCCCCCcEEEEeCc-hHHH
Confidence 4677776543 222334456776666543 4455443 344567777888888888653 4899997543 3444
Q ss_pred HHHHhhccCC-cc----EEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHH
Q 008863 112 VVAEIASRVQ-VP----ILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLAR 163 (550)
Q Consensus 112 ~v~~~~~~~~-iP----~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~ 163 (550)
.+...+.+.+ +| ++++... +. .....|-+-.+..+...+++..+++|.
T Consensus 194 g~~~al~~~g~vp~di~vvg~d~~---~~-~~~~~p~lttv~~~~~~~g~~a~~~l~ 246 (272)
T 3o74_A 194 GVFDTLQARPVDSRQLQLGTFGDN---QL-LDFLPLPVNAMAQQHGQIAATALELAL 246 (272)
T ss_dssp HHHHHHHTSCGGGCCCEEEEESCC---GG-GGTSSSCEEEEECCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCccceEEEEeCCh---HH-HHhcCCCceEEEeCHHHHHHHHHHHHH
Confidence 4555556655 34 5665543 22 222335566777777788887777664
No 204
>3d02_A Putative LACI-type transcriptional regulator; periplasmic sugar-binding protein, structura genomics; HET: MSE GOL; 1.30A {Klebsiella pneumoniae subsp}
Probab=51.20 E-value=61 Score=29.22 Aligned_cols=81 Identities=9% Similarity=0.092 Sum_probs=51.0
Q ss_pred eEEEEEEEcC--CCCCcchhHHHHHHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcCCCeEEEEEcCCHHHH
Q 008863 168 RRVAAIYEDN--VYGGDSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMT 245 (550)
Q Consensus 168 ~~v~ii~~~~--~~g~~~~~~~~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~~ii~~~~~~~~~ 245 (550)
.+++++..+. .|. ....+.+++.+++.| +.+.... .... +.......++.+...+.+.||+........
T Consensus 5 ~~Ig~i~~~~~~~~~--~~~~~g~~~~~~~~g-~~~~~~~--~~~~----~~~~~~~~~~~l~~~~vdgiii~~~~~~~~ 75 (303)
T 3d02_A 5 KTVVNISKVDGMPWF--NRMGEGVVQAGKEFN-LNASQVG--PSST----DAPQQVKIIEDLIARKVDAITIVPNDANVL 75 (303)
T ss_dssp EEEEEECSCSSCHHH--HHHHHHHHHHHHHTT-EEEEEEC--CSSS----CHHHHHHHHHHHHHTTCSEEEECCSCHHHH
T ss_pred eEEEEEeccCCChHH--HHHHHHHHHHHHHcC-CEEEEEC--CCCC----CHHHHHHHHHHHHHcCCCEEEEecCChHHH
Confidence 4677777543 355 667788888899999 7765321 1111 223445667777777899888823344444
Q ss_pred HHHHHHHHHcCC
Q 008863 246 IHLFTEANRMGL 257 (550)
Q Consensus 246 ~~il~~a~~~g~ 257 (550)
...++.+.+.++
T Consensus 76 ~~~~~~~~~~~i 87 (303)
T 3d02_A 76 EPVFKKARDAGI 87 (303)
T ss_dssp HHHHHHHHHTTC
T ss_pred HHHHHHHHHCCC
Confidence 566777777665
No 205
>4f2g_A Otcase 1, ornithine carbamoyltransferase 1; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis}
Probab=51.08 E-value=44 Score=30.77 Aligned_cols=129 Identities=14% Similarity=0.196 Sum_probs=76.2
Q ss_pred EEEEEEEecCCccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCC---C-CHHHHHHHHHHhhhcCCeEEEEcCCChHHH
Q 008863 35 TKIGAIVDANSQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHN---R-DPFQAATAAQELINKEKVKVIAGMETWEET 110 (550)
Q Consensus 35 i~IG~i~~~~~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~---~-~~~~a~~~~~~li~~~~v~aiiG~~~s~~~ 110 (550)
-.|+.+|...+ .+...+|+.|..++ ++..+.+...++. + .....++....+ . .+.++=.+. .
T Consensus 46 k~la~lF~e~S---TRTR~SFE~A~~~L----Gg~~i~l~~~~ss~~kgEsl~DTarvls~~-~--D~iviR~~~-~--- 111 (309)
T 4f2g_A 46 RTLAMIFEKSS---TRTRLSFEAGIFQL----GGHAVFMSTRDTQLGRGEPVEDSAQVISRM-V--DIIMIRTFE-Q--- 111 (309)
T ss_dssp CEEEEEESSCC---HHHHHHHHHHHHHT----TCEEEEECCSSCEETBEECHHHHHHHHHHH-C--SEEEEECSC-H---
T ss_pred ceEEEEecCCC---hhhHhhHHHHHHHc----CCeEEEcCcccccCCCCCCHHHHHHHHHHh-C--CEEEEecCC-H---
Confidence 45888887764 68889999999998 4555554432222 1 223333333333 1 233333432 2
Q ss_pred HHHHHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHH---HHc---CCeEEEEEEEcCCCCCcch
Q 008863 111 AVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLA---RKY---NWRRVAAIYEDNVYGGDSG 184 (550)
Q Consensus 111 ~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l---~~~---~w~~v~ii~~~~~~g~~~~ 184 (550)
..+..++...++|+|..+.. .. + -.++++|++ +++ ...+|+++.+. ..
T Consensus 112 ~~~~~lA~~~~vPVINag~~--------~~-------H-----PtQaLaDl~Ti~e~~g~l~glkva~vGD~------~~ 165 (309)
T 4f2g_A 112 DIIQRFAENSRVPVINGLTN--------EY-------H-----PCQVLADIFTYYEHRGPIRGKTVAWVGDA------NN 165 (309)
T ss_dssp HHHHHHHHTCSSCEEEEECS--------SC-------C-----HHHHHHHHHHHHHHHSCCTTCEEEEESCC------CH
T ss_pred HHHHHHHHhCCCCEEECCCC--------cc-------C-----cHHHHHHHHHHHHHhCCCCCCEEEEECCC------cc
Confidence 33445666778999997632 11 1 246777765 344 34678877652 34
Q ss_pred hHHHHHHHHhcCCCeEEEEE
Q 008863 185 KLALLAEALQNVSSSEIQSR 204 (550)
Q Consensus 185 ~~~~l~~~l~~~g~~~v~~~ 204 (550)
.+..+...+...| .++...
T Consensus 166 va~Sl~~~~~~~G-~~v~~~ 184 (309)
T 4f2g_A 166 MLYTWIQAARILD-FKLQLS 184 (309)
T ss_dssp HHHHHHHHHHHHT-CEEEEE
T ss_pred hHHHHHHHHHHcC-CEEEEE
Confidence 6788888888888 776543
No 206
>3ojc_A Putative aspartate/glutamate racemase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha beta; 1.75A {Yersinia pestis}
Probab=50.80 E-value=14 Score=32.50 Aligned_cols=32 Identities=19% Similarity=0.269 Sum_probs=16.8
Q ss_pred hcCCeEEEEcCCChHHHHHHHHhhccCCccEEe
Q 008863 94 NKEKVKVIAGMETWEETAVVAEIASRVQVPILS 126 (550)
Q Consensus 94 ~~~~v~aiiG~~~s~~~~~v~~~~~~~~iP~is 126 (550)
.+.++.+|+-+-++... .+..+-+..++|++.
T Consensus 73 ~~~g~~~iviaCNTa~~-~~~~l~~~~~iPvi~ 104 (231)
T 3ojc_A 73 KHAGAEVIVVCTNTMHK-VADDIEAACGLPLLH 104 (231)
T ss_dssp HHHTCCEEEECSSGGGG-GHHHHHHHHCSCBCC
T ss_pred HhcCCCEEEEeCCchHH-HHHHHHHhCCCCEec
Confidence 34577777754443222 223344455777665
No 207
>3uif_A Sulfonate ABC transporter, periplasmic sulfonate- protein SSUA; structural genomics; 2.60A {Methylobacillus flagellatus}
Probab=49.54 E-value=9.4 Score=35.99 Aligned_cols=43 Identities=14% Similarity=0.021 Sum_probs=32.2
Q ss_pred HHHHHHHhCCCCCCeEEE--ecCCChHHHHHhhhcccccEEeeceeee
Q 008863 494 LFRLVVDHLNYDLPYEFV--PHDGVYDDLINGVYDKVNYFNYHDKLLF 539 (550)
Q Consensus 494 ll~~la~~l~f~~~~~~~--~~~g~w~Gmi~el~~~~ad~a~~~~ti~ 539 (550)
|.+++++. |++ ++++ ...|.+..++..|..|++|+++++.+..
T Consensus 35 l~~~~~~~-G~~--v~~~~~~~~g~~~~~~~al~~G~~D~~~~~~~~~ 79 (348)
T 3uif_A 35 FPEELRKQ-GIK--VEWVPAAMASVGPVINEGFASGKIDFGIYGDLPP 79 (348)
T ss_dssp HHHHHHHT-TEE--EEEEEECTTCHHHHHHHHHHTTCCCEEEEESHHH
T ss_pred HHHHHHhc-CCe--EEEEecccCCCcHHHHHHHHcCCCCEEecCcHHH
Confidence 44556655 777 8884 4467788899999999999999766543
No 208
>3uug_A Multiple sugar-binding periplasmic receptor CHVE; periplasmic binding protein, sugar-binding protein, sugar binding protein; HET: BDP; 1.75A {Agrobacterium tumefaciens} PDB: 3urm_A*
Probab=48.75 E-value=45 Score=30.66 Aligned_cols=80 Identities=9% Similarity=0.072 Sum_probs=55.0
Q ss_pred eEEEEEEEcC--CCCCcchhHHHHHHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcCCCeEEEEEcCCHHHH
Q 008863 168 RRVAAIYEDN--VYGGDSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMT 245 (550)
Q Consensus 168 ~~v~ii~~~~--~~g~~~~~~~~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~~ii~~~~~~~~~ 245 (550)
++|+++..+. .|. ....+.+.+.+++.| ..+.... ... +.......++.+...+.+.||+........
T Consensus 4 ~~Igvi~~~~~~~~~--~~~~~gi~~~a~~~g-~~~~~~~--~~~-----~~~~~~~~i~~~~~~~vdgiIi~~~~~~~~ 73 (330)
T 3uug_A 4 GSVGIAMPTKSSARW--IDDGNNIVKQLQEAG-YKTDLQY--ADD-----DIPNQLSQIENMVTKGVKVLVIASIDGTTL 73 (330)
T ss_dssp CEEEEEECCSSSTHH--HHHHHHHHHHHHHTT-CEEEEEE--CTT-----CHHHHHHHHHHHHHHTCSEEEECCSSGGGG
T ss_pred cEEEEEeCCCcchHH--HHHHHHHHHHHHHcC-CEEEEee--CCC-----CHHHHHHHHHHHHHcCCCEEEEEcCCchhH
Confidence 5788888764 455 677888899999999 8776543 111 233445667777777899998833444455
Q ss_pred HHHHHHHHHcCC
Q 008863 246 IHLFTEANRMGL 257 (550)
Q Consensus 246 ~~il~~a~~~g~ 257 (550)
...++++.+.|+
T Consensus 74 ~~~~~~~~~~gi 85 (330)
T 3uug_A 74 SDVLKQAGEQGI 85 (330)
T ss_dssp HHHHHHHHHTTC
T ss_pred HHHHHHHHHCCC
Confidence 677888888775
No 209
>4dik_A Flavoprotein; TM0755, electron transport, DI-iron protein; 1.75A {Thermotoga maritima} PDB: 4dil_A 1vme_A*
Probab=48.55 E-value=80 Score=30.42 Aligned_cols=94 Identities=16% Similarity=0.120 Sum_probs=59.7
Q ss_pred eEEEEEEEcCCCCCcchhHHHHHHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcCCCeEEEEEcCCH-----
Q 008863 168 RRVAAIYEDNVYGGDSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASL----- 242 (550)
Q Consensus 168 ~~v~ii~~~~~~g~~~~~~~~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~~ii~~~~~~----- 242 (550)
++|+|+|.. .||.-+..++.+.+.+.+.| +++........ ...+....+..+. +++.|++ .+..
T Consensus 266 ~~v~I~Y~S-~yGnTe~mA~~ia~gl~~~G-v~~~~~~~~d~------~~~~~s~i~~~i~--~~~~ivl-GspT~~~~~ 334 (410)
T 4dik_A 266 GKVTVIYDS-MYGFVENVMKKAIDSLKEKG-FTPVVYKFSDE------ERPAISEILKDIP--DSEALIF-GVSTYEAEI 334 (410)
T ss_dssp TEEEEEEEC-SSSHHHHHHHHHHHHHHHTT-CEEEEEEECSS------CCCCHHHHHHHST--TCSEEEE-EECCTTSSS
T ss_pred cceeeEEec-ccChHHHHHHHHHHHHHhcC-CceEEEEeccC------CCCCHHHHHHHHH--hCCeEEE-EeCCcCCcC
Confidence 478888864 45433556788888999999 87654433332 2245556666665 4566666 4432
Q ss_pred -HHHHHHHHHHHHcCCCCCCEEEEEeccchh
Q 008863 243 -DMTIHLFTEANRMGLVGKDSVWIVTNTVAN 272 (550)
Q Consensus 243 -~~~~~il~~a~~~g~~~~~~~~i~~~~~~~ 272 (550)
.....++.........++.-..+++-+|..
T Consensus 335 ~p~~~~~l~~l~~~~~~~K~~~~FGSyGWsg 365 (410)
T 4dik_A 335 HPLMRFTLLEIIDKANYEKPVLVFGVHGWAP 365 (410)
T ss_dssp CHHHHHHHHHHHHHCCCCCEEEEEEECCCCC
T ss_pred CHHHHHHHHHHHhcccCCCEEEEEECCCCCc
Confidence 355667777777777766555667777764
No 210
>2gzm_A Glutamate racemase; enzyme, isomerase; HET: DGL; 1.99A {Bacillus anthracis}
Probab=46.24 E-value=39 Score=30.34 Aligned_cols=33 Identities=12% Similarity=0.264 Sum_probs=22.6
Q ss_pred hcCCeEEEEcCCChHHHHHHHHhhccCCccEEe
Q 008863 94 NKEKVKVIAGMETWEETAVVAEIASRVQVPILS 126 (550)
Q Consensus 94 ~~~~v~aiiG~~~s~~~~~v~~~~~~~~iP~is 126 (550)
.+.++.+|+-+-++..+..+..+-+..++|+|.
T Consensus 62 ~~~g~d~iviaCNTas~~~l~~lr~~~~iPvig 94 (267)
T 2gzm_A 62 LDLNIKMLVIACNTATAVVLEEMQKQLPIPVVG 94 (267)
T ss_dssp HTTTCSEEEECCHHHHHHHHHHHHHHCSSCEEE
T ss_pred HHCCCCEEEEeCchhhHHHHHHHHHhCCCCEEe
Confidence 347898888654444433566666778999988
No 211
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=46.12 E-value=11 Score=32.62 Aligned_cols=31 Identities=13% Similarity=0.046 Sum_probs=26.5
Q ss_pred eEEEEcCCChHHHHHHHHhhccCCccEEecc
Q 008863 98 VKVIAGMETWEETAVVAEIASRVQVPILSFA 128 (550)
Q Consensus 98 v~aiiG~~~s~~~~~v~~~~~~~~iP~is~~ 128 (550)
+.+++||..|+=......+++.+++|+|+.+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g~~~istG 32 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKGFVHISTG 32 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCEEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCeEEcHH
Confidence 4678999888877778889999999999965
No 212
>1js1_X Transcarbamylase; alpha/beta topology, two domains, transferase; 2.00A {Bacteroides fragilis} SCOP: c.78.1.1 c.78.1.1 PDB: 2fg6_X* 2fg7_X* 2g7m_X*
Probab=45.92 E-value=1.4e+02 Score=27.63 Aligned_cols=139 Identities=13% Similarity=0.107 Sum_probs=75.7
Q ss_pred EEEEEEEecCCccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCC------------HHHHHHHHHHhhhcC-CeEEE
Q 008863 35 TKIGAIVDANSQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRD------------PFQAATAAQELINKE-KVKVI 101 (550)
Q Consensus 35 i~IG~i~~~~~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~------------~~~a~~~~~~li~~~-~v~ai 101 (550)
-.|+.+|-..+ .+...+|+.|+.++ ++..+.+...++.-. -.+.+..+.+.++.- .+.++
T Consensus 37 k~l~~lF~epS---TRTR~SFe~A~~~L----Gg~~i~l~~~~ss~~~e~~~g~~m~~~kgEsl~DTarvLs~y~D~Ivi 109 (324)
T 1js1_X 37 KTLLMIFFNSS---LRTRLSTQKAALNL----GMNVIVLDINQGAWKLETERGVIMDGDKPEHLLEAIPVMGCYCDIIGV 109 (324)
T ss_dssp CEEEEEESSCC---SHHHHHHHHHHHHT----TCEEEEEECCGGGCCEECCSSCCCCSSCCEEHHHHHHHHHHTCSEEEE
T ss_pred CEEEEEecCCC---cchHHHHHHHHHHc----CCEEEEECCCCCceeeccccccccccCCCCCHHHHHHHHHHhCcEEEE
Confidence 46788886653 58889999999998 455555544332222 112233333333321 23333
Q ss_pred EcCCCh------HHHHHHHHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHH---HHcC---CeE
Q 008863 102 AGMETW------EETAVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLA---RKYN---WRR 169 (550)
Q Consensus 102 iG~~~s------~~~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l---~~~~---w~~ 169 (550)
=.+.+- .....+..+++...+|+|..+.. .. . -.++++|++ +++| .+
T Consensus 110 R~~~~~~~~~~~~~~~~~~~lA~~~~vPVINa~~~--------~~-------H-----PtQaLaDl~Ti~e~~g~~~l~- 168 (324)
T 1js1_X 110 RSFARFENREYDYNEVIINQFIQHSGRPVFSMEAA--------TR-------H-----PLQSFADLITIEEYKKTARPK- 168 (324)
T ss_dssp ECCCCSSCHHHHHHTHHHHHHHHHSSSCEEESSCS--------SC-------C-----HHHHHHHHHHHHHHCSSSSCE-
T ss_pred ecccccccccccccchHHHHHHhhCCCCEEECCCC--------CC-------C-----cHHHHHHHHHHHHHcCCCCee-
Confidence 333100 02223455666778999994322 11 1 246777775 4577 34
Q ss_pred EEEEE--EcCCCCCcchhHHHHHHHHhcCCCeEEEEE
Q 008863 170 VAAIY--EDNVYGGDSGKLALLAEALQNVSSSEIQSR 204 (550)
Q Consensus 170 v~ii~--~~~~~g~~~~~~~~l~~~l~~~g~~~v~~~ 204 (550)
+.+.+ ... . |+...+..+...+...| ..+...
T Consensus 169 l~ia~a~~~~-v-GD~rva~Sl~~~~~~~G-~~v~~~ 202 (324)
T 1js1_X 169 VVMTWAPHPR-P-LPQAVPNSFAEWMNATD-YEFVIT 202 (324)
T ss_dssp EEEECCCCSS-C-CCSHHHHHHHHHHHTSS-SEEEEE
T ss_pred EEEEEEcccc-c-CCcchHHHHHHHHHHCC-CEEEEe
Confidence 44444 111 1 11357788888898889 877653
No 213
>3sds_A Ornithine carbamoyltransferase, mitochondrial; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.80A {Coccidioides immitis}
Probab=45.86 E-value=1.7e+02 Score=27.32 Aligned_cols=132 Identities=15% Similarity=0.146 Sum_probs=75.2
Q ss_pred EEEEEEEecCCccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcC-CeEEEEcCCChHHHHHH
Q 008863 35 TKIGAIVDANSQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKE-KVKVIAGMETWEETAVV 113 (550)
Q Consensus 35 i~IG~i~~~~~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~-~v~aiiG~~~s~~~~~v 113 (550)
-.|+.+|...+ .+....|+.|+.++ ++..+.+...++.-.-.+.+....+.++.- .+.++=.+ ... .+
T Consensus 67 k~va~lF~e~S---TRTR~SFE~A~~~L----Gg~~i~l~~~~s~l~kgEsl~DTarvLs~~~D~IviR~~-~~~---~~ 135 (353)
T 3sds_A 67 KTVAMMFSKRS---TRTRVSTEGAVVKM----GGHPMFLGKDDIQLGVNESLYDTSVVISSMVSCIVARVG-PHS---DI 135 (353)
T ss_dssp CEEEEEESSCC---HHHHHHHHHHHHHT----TCEEEEECTTTC--CCSSCHHHHHHHHHTSCSEEEEECS-SHH---HH
T ss_pred CEEEEEecCCc---hhHHHHHHHHHHHc----CCeEEecCCccccccCCccHHHHHHHHHHhcCEEEEEeC-ChH---HH
Confidence 47888887764 68889999999998 455554422222211112333333333321 22223233 222 24
Q ss_pred HHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHH---HHcCC----------------eEEEEEE
Q 008863 114 AEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLA---RKYNW----------------RRVAAIY 174 (550)
Q Consensus 114 ~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l---~~~~w----------------~~v~ii~ 174 (550)
..++....+|+|..+.. .. +| .++++|++ +++|. .+|+++.
T Consensus 136 ~~lA~~s~vPVINag~d--------~~-------HP-----tQaLaDl~TI~E~~G~~~~~~~~~~~~~~l~glkva~vG 195 (353)
T 3sds_A 136 ANLAKHSSVPVINALCD--------TF-------HP-----LQAIADFLTIHESFASQSATHGTHPSSLGLEGLKIAWVG 195 (353)
T ss_dssp HHHHHHCSSCEEEEECS--------SC-------CH-----HHHHHHHHHHHHHTC--------CTTCCSCTTCEEEEES
T ss_pred HHHHhhCCCCEEECCCC--------CC-------Cc-----HHHHHHHHHHHHHhCCCcccccccccccccCCCEEEEEC
Confidence 55666778999986532 11 22 46777765 45653 3666665
Q ss_pred EcCCCCCcchhHHHHHHHHhcCCCeEEEEE
Q 008863 175 EDNVYGGDSGKLALLAEALQNVSSSEIQSR 204 (550)
Q Consensus 175 ~~~~~g~~~~~~~~l~~~l~~~g~~~v~~~ 204 (550)
+- ...+..+...+...| +++...
T Consensus 196 D~------~nva~Sl~~~l~~lG-~~v~~~ 218 (353)
T 3sds_A 196 DA------NNVLFDLAIAATKMG-VNVAVA 218 (353)
T ss_dssp CC------CHHHHHHHHHHHHTT-CEEEEE
T ss_pred CC------chHHHHHHHHHHHcC-CEEEEE
Confidence 42 346788888888888 776543
No 214
>3jvd_A Transcriptional regulators; structural genomics, PSI-2, sugar binding protein, transcrip regulation, protein structure initiative; 2.30A {Corynebacterium glutamicum}
Probab=45.42 E-value=1.8e+02 Score=26.60 Aligned_cols=117 Identities=15% Similarity=0.104 Sum_probs=70.9
Q ss_pred EEEEEEEecC-CccchhHHHHHHHHHHHHhcCCCCcEEEEEEec-CCCCHHHHHHHHHHhhhcCCeEEEEcCCChHHHHH
Q 008863 35 TKIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRD-HNRDPFQAATAAQELINKEKVKVIAGMETWEETAV 112 (550)
Q Consensus 35 i~IG~i~~~~-~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d-~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~~~~~ 112 (550)
=+||++.... ......-..|++.|+++. |.+ . +.. ...+...+.+.+.+++....+.||+.... ..+..
T Consensus 175 ~~I~~i~~~~~~~~~~~R~~Gf~~al~~~-----g~~--~-~~~~~~~~~~~~~~~~~~ll~~~~~~ai~~~nd-~~A~g 245 (333)
T 3jvd_A 175 MNIAALVGEESLSTTQERMRGISHAASIY-----GAE--V-TFHFGHYSVESGEEMAQVVFNNGLPDALIVASP-RLMAG 245 (333)
T ss_dssp CEEEEEESCTTSHHHHHHHHHHHHHHHHT-----TCE--E-EEEECCSSHHHHHHHHHHHHHTCCCSEEEECCH-HHHHH
T ss_pred CeEEEEeCCCCCccHHHHHHHHHHHHHHC-----CCC--E-EEecCCCCHHHHHHHHHHHhcCCCCcEEEECCH-HHHHH
Confidence 4688887654 223345567888888775 334 2 333 55677788888888887544889997543 33333
Q ss_pred HHHhhccCCc--c----EEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHH
Q 008863 113 VAEIASRVQV--P----ILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARK 164 (550)
Q Consensus 113 v~~~~~~~~i--P----~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~ 164 (550)
+...+.+.++ | ++++... +.. ....|-+-.+..+...+++..+++|..
T Consensus 246 ~~~al~~~G~~vP~disvig~D~~---~~~-~~~~p~lttv~~~~~~~g~~Av~~L~~ 299 (333)
T 3jvd_A 246 VMRAFTRLNVRVPHDVVIGGYDDP---EWY-SFVGAGITTFVPPHEEMGKEAVRLLVD 299 (333)
T ss_dssp HHHHHHHTTCCTTTTCEEEEESCC---GGG-GGSTTSCEEEECCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCCceEEEEECCh---HHH-HhcCCCceEEecCHHHHHHHHHHHHHH
Confidence 4444444443 3 6666544 222 222344556777778888888777643
No 215
>2oho_A Glutamate racemase; isomerase; 2.25A {Streptococcus pyogenes m1 gas} PDB: 2ohg_A 2ohv_A*
Probab=45.29 E-value=62 Score=29.10 Aligned_cols=36 Identities=17% Similarity=0.293 Sum_probs=23.4
Q ss_pred HhhhcCCeEEEEcCCChHHHHHHHHhhccCCccEEe
Q 008863 91 ELINKEKVKVIAGMETWEETAVVAEIASRVQVPILS 126 (550)
Q Consensus 91 ~li~~~~v~aiiG~~~s~~~~~v~~~~~~~~iP~is 126 (550)
+.+.+.++.+|+-+-++..+..+..+-+..++|+|.
T Consensus 68 ~~L~~~g~d~iviaCNTas~~~l~~lr~~~~iPvig 103 (273)
T 2oho_A 68 NFLLTQNVKMIVFACNTATAVAWEEVKAALDIPVLG 103 (273)
T ss_dssp HHHHTTTCSEEEECCHHHHHHHHHHHHHHCSSCEEE
T ss_pred HHHHHCCCCEEEEeCchHhHHHHHHHHHhCCCCEEe
Confidence 333457898888654444434455666778899887
No 216
>1b73_A Glutamate racemase; isomerase; 2.30A {Aquifex pyrophilus} SCOP: c.78.2.1 c.78.2.1 PDB: 1b74_A*
Probab=45.09 E-value=95 Score=27.47 Aligned_cols=121 Identities=14% Similarity=0.203 Sum_probs=62.0
Q ss_pred HHHHhhhcCCeEEEEcCCChHHHHHHHHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHHcCC
Q 008863 88 AAQELINKEKVKVIAGMETWEETAVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNW 167 (550)
Q Consensus 88 ~~~~li~~~~v~aiiG~~~s~~~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~~~w 167 (550)
.+..+. +.++.+|+-+-++..+..+..+-+..++|++...-. ++...++..+-
T Consensus 54 ~~~~L~-~~g~d~iviaCnTa~~~~~~~lr~~~~iPvigi~e~--------------------------~~~~A~~~~~~ 106 (254)
T 1b73_A 54 CAGFLK-DKGVDIIVVACNTASAYALERLKKEINVPVFGVIEP--------------------------GVKEALKKSRN 106 (254)
T ss_dssp HHHHHH-TTTCSEEEECCHHHHTTSHHHHHHHSSSCEEESHHH--------------------------HHHHHHHHCSS
T ss_pred HHHHHH-HCCCCEEEEeCchhhHHHHHHHHHhCCCCEEeeeHH--------------------------HHHHHHHccCC
Confidence 333443 468988886544433223555556678898873211 11111233466
Q ss_pred eEEEEEEEcCCCCCcchhHHHHHHHHhcCCCeEEEEEeecCCCC-CCCCC-------hHHHHHHHHHhhcCCCeEEEEEc
Q 008863 168 RRVAAIYEDNVYGGDSGKLALLAEALQNVSSSEIQSRLVLPPIS-SISDP-------KEAVRGELKKVQDKQSRVFIVLQ 239 (550)
Q Consensus 168 ~~v~ii~~~~~~g~~~~~~~~l~~~l~~~g~~~v~~~~~~~~~~-~~~~~-------~~d~~~~l~~i~~~~~~~ii~~~ 239 (550)
++|+++...... ....+++.++..| +++.... .+... ..+.. ...+...++++.+. +|.||+ .
T Consensus 107 ~rigVlaT~~T~-----~~~~y~~~l~~~g-~~v~~~~-~~~~v~~ie~g~~~~~~~~~~l~~~~~~l~~~-~d~IIL-G 177 (254)
T 1b73_A 107 KKIGVIGTPATV-----KSGAYQRKLEEGG-ADVFAKA-CPLFAPLAEEGLLEGEITRKVVEHYLKEFKGK-IDTLIL-G 177 (254)
T ss_dssp CEEEEEECHHHH-----HHCHHHHHHHTTS-CEEEEEE-CCCCTTTSCGGGGSGGGHHHHHHHHSTTTTTT-CSEEEE-C
T ss_pred CEEEEEEChHHh-----hhHHHHHHHHcCC-CEEEecC-CHHHHHHHHCCCCCCHHHHHHHHHHHHHHHhc-CCEEEE-C
Confidence 899999865321 1223455566677 7664221 12111 01101 12344455556555 999999 7
Q ss_pred CCHHH
Q 008863 240 ASLDM 244 (550)
Q Consensus 240 ~~~~~ 244 (550)
|..-.
T Consensus 178 CT~~p 182 (254)
T 1b73_A 178 CTHYP 182 (254)
T ss_dssp CCCTT
T ss_pred ccChH
Confidence 65543
No 217
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=44.35 E-value=73 Score=28.24 Aligned_cols=79 Identities=10% Similarity=0.015 Sum_probs=53.9
Q ss_pred CCeEEEEEEEcC--CCCCcchhHHHHHHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcCCCeEEEEEcCCHH
Q 008863 166 NWRRVAAIYEDN--VYGGDSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLD 243 (550)
Q Consensus 166 ~w~~v~ii~~~~--~~g~~~~~~~~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~~ii~~~~~~~ 243 (550)
+-+.|+++..+. .|. ..+.+.+.+.+.+.| ..+..... .. +.......++.+.+.+.|.||+ .....
T Consensus 6 ~s~~Igvi~~~~~~~~~--~~~~~gi~~~~~~~g-~~~~~~~~-~~------~~~~~~~~~~~l~~~~vdgiIi-~~~~~ 74 (276)
T 3jy6_A 6 SSKLIAVIVANIDDYFS--TELFKGISSILESRG-YIGVLFDA-NA------DIEREKTLLRAIGSRGFDGLIL-QSFSN 74 (276)
T ss_dssp CCCEEEEEESCTTSHHH--HHHHHHHHHHHHTTT-CEEEEEEC-TT------CHHHHHHHHHHHHTTTCSEEEE-ESSCC
T ss_pred CCcEEEEEeCCCCchHH--HHHHHHHHHHHHHCC-CEEEEEeC-CC------CHHHHHHHHHHHHhCCCCEEEE-ecCCc
Confidence 346788888754 355 677888889999999 87765331 11 2334456778888889999998 54433
Q ss_pred HHHHHHHHHHHcCC
Q 008863 244 MTIHLFTEANRMGL 257 (550)
Q Consensus 244 ~~~~il~~a~~~g~ 257 (550)
...+..+.+.|+
T Consensus 75 --~~~~~~l~~~~i 86 (276)
T 3jy6_A 75 --PQTVQEILHQQM 86 (276)
T ss_dssp --HHHHHHHHTTSS
T ss_pred --HHHHHHHHHCCC
Confidence 567777777765
No 218
>2fn9_A Ribose ABC transporter, periplasmic ribose-bindin; RBP, ribose binding protein, periplasmic binding protein, thermophilic proteins; 1.40A {Thermotoga maritima} PDB: 2fn8_A*
Probab=43.38 E-value=55 Score=29.33 Aligned_cols=80 Identities=10% Similarity=0.040 Sum_probs=49.5
Q ss_pred eEEEEEEEc--CCCCCcchhHHHHHHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcCCCeEEEEEcCCHHHH
Q 008863 168 RRVAAIYED--NVYGGDSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMT 245 (550)
Q Consensus 168 ~~v~ii~~~--~~~g~~~~~~~~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~~ii~~~~~~~~~ 245 (550)
++++++..+ +.|. ....+.+++.+++.| ..+..... . . +.......++.+.+.+.+.||+........
T Consensus 3 ~~Ig~i~~~~~~~~~--~~~~~gi~~~~~~~g-~~~~~~~~--~-~----~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~ 72 (290)
T 2fn9_A 3 GKMAIVISTLNNPWF--VVLAETAKQRAEQLG-YEATIFDS--Q-N----DTAKESAHFDAIIAAGYDAIIFNPTDADGS 72 (290)
T ss_dssp CEEEEEESCSSSHHH--HHHHHHHHHHHHHTT-CEEEEEEC--T-T----CHHHHHHHHHHHHHTTCSEEEECCSCTTTT
T ss_pred eEEEEEeCCCCChHH--HHHHHHHHHHHHHcC-CEEEEeCC--C-C----CHHHHHHHHHHHHHcCCCEEEEecCChHHH
Confidence 367788765 3455 667788888888888 87654321 1 1 223345567777777889888823333333
Q ss_pred HHHHHHHHHcCC
Q 008863 246 IHLFTEANRMGL 257 (550)
Q Consensus 246 ~~il~~a~~~g~ 257 (550)
...++.+.+.++
T Consensus 73 ~~~~~~~~~~~i 84 (290)
T 2fn9_A 73 IANVKRAKEAGI 84 (290)
T ss_dssp HHHHHHHHHTTC
T ss_pred HHHHHHHHHCCC
Confidence 456677776665
No 219
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=43.13 E-value=86 Score=28.02 Aligned_cols=79 Identities=9% Similarity=0.090 Sum_probs=55.2
Q ss_pred eEEEEEEEcC--CCCCcchhHHHHHHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcCCCeEEEEEcCCHH--
Q 008863 168 RRVAAIYEDN--VYGGDSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLD-- 243 (550)
Q Consensus 168 ~~v~ii~~~~--~~g~~~~~~~~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~~ii~~~~~~~-- 243 (550)
++|+++..+. .|. ....+.+.+.+.+.| ..+..... .. +.......++.+...+.+.||+ .....
T Consensus 16 ~~Igvi~~~~~~~~~--~~~~~gi~~~a~~~g-~~~~~~~~-~~------~~~~~~~~~~~l~~~~vdgiIi-~~~~~~~ 84 (298)
T 3tb6_A 16 KTIGVLTTYISDYIF--PSIIRGIESYLSEQG-YSMLLTST-NN------NPDNERRGLENLLSQHIDGLIV-EPTKSAL 84 (298)
T ss_dssp CEEEEEESCSSSTTH--HHHHHHHHHHHHHTT-CEEEEEEC-TT------CHHHHHHHHHHHHHTCCSEEEE-CCSSTTS
T ss_pred ceEEEEeCCCCchHH--HHHHHHHHHHHHHCC-CEEEEEeC-CC------ChHHHHHHHHHHHHCCCCEEEE-ecccccc
Confidence 7899998764 455 778889999999999 87765431 11 2344566778888889999998 54321
Q ss_pred --HHHHHHHHHHHcCC
Q 008863 244 --MTIHLFTEANRMGL 257 (550)
Q Consensus 244 --~~~~il~~a~~~g~ 257 (550)
.....++.+.+.|+
T Consensus 85 ~~~~~~~~~~~~~~~i 100 (298)
T 3tb6_A 85 QTPNIGYYLNLEKNGI 100 (298)
T ss_dssp CCTTHHHHHHHHHTTC
T ss_pred cCCcHHHHHHHHhcCC
Confidence 34467777877776
No 220
>1mkz_A Molybdenum cofactor biosynthesis protein B; MAD, WEAK anomalous signal, molybdopterin synthesis, structural genomics, PSI; HET: MSE; 1.60A {Escherichia coli} SCOP: c.57.1.1 PDB: 1r2k_B
Probab=42.76 E-value=1.4e+02 Score=24.59 Aligned_cols=65 Identities=14% Similarity=0.252 Sum_probs=44.8
Q ss_pred eEEEEEEEcCCCCCc-chhHHHHHHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcC-CCeEEEEEcC
Q 008863 168 RRVAAIYEDNVYGGD-SGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDK-QSRVFIVLQA 240 (550)
Q Consensus 168 ~~v~ii~~~~~~g~~-~~~~~~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~-~~~~ii~~~~ 240 (550)
-++++|...++.|.. ......+.+.+.+.| .++.....++. +.+.+...+++..+. ++|+||. .+
T Consensus 11 ~~v~Ii~tGdE~g~i~D~n~~~l~~~L~~~G-~~v~~~~iv~D------d~~~i~~~l~~a~~~~~~DlVit-tG 77 (172)
T 1mkz_A 11 TRIAILTVSNRRGEEDDTSGHYLRDSAQEAG-HHVVDKAIVKE------NRYAIRAQVSAWIASDDVQVVLI-TG 77 (172)
T ss_dssp CEEEEEEECSSCCGGGCHHHHHHHHHHHHTT-CEEEEEEEECS------CHHHHHHHHHHHHHSSSCCEEEE-ES
T ss_pred CEEEEEEEeCCCCcccCccHHHHHHHHHHCC-CeEeEEEEeCC------CHHHHHHHHHHHHhcCCCCEEEe-CC
Confidence 478888876654310 223467888899999 88877666654 446777788877665 6899988 44
No 221
>3d8u_A PURR transcriptional regulator; APC91343.1, vibrio parahaem RIMD 2210633, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.88A {Vibrio parahaemolyticus}
Probab=42.63 E-value=1.7e+02 Score=25.55 Aligned_cols=120 Identities=11% Similarity=0.052 Sum_probs=68.1
Q ss_pred EEEEEEEecC-CccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhc-CCeEEEEcCCChHHHHH
Q 008863 35 TKIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINK-EKVKVIAGMETWEETAV 112 (550)
Q Consensus 35 i~IG~i~~~~-~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~-~~v~aiiG~~~s~~~~~ 112 (550)
=+||.+.... ......-..|++.++++.+-. ....+ +.....+...+.+.+.+++.. .++.+|++.... .+..
T Consensus 121 ~~i~~i~~~~~~~~~~~R~~gf~~~l~~~g~~---~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~-~a~g 195 (275)
T 3d8u_A 121 KNVGFIGARGNHSTLQRQLHGWQSAMIENYLT---PDHFL-TTHEAPSSQLGAEGLAKLLLRDSSLNALVCSHEE-IAIG 195 (275)
T ss_dssp CCEEEEECSCSSHHHHHHHHHHHHHHHHTTCC---CCCEE-ECSSCCCHHHHHHHHHHHHTTCTTCCEEEESSHH-HHHH
T ss_pred CeEEEEcCCCCCchHHHHHHHHHHHHHHcCCC---CCccE-EEeCCCChhHHHHHHHHHHhCCCCCCEEEEcCcH-HHHH
Confidence 3677777543 223345567888888775321 11122 234455777778888888864 358899975433 3434
Q ss_pred HHHhhccCC--cc----EEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHH
Q 008863 113 VAEIASRVQ--VP----ILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLAR 163 (550)
Q Consensus 113 v~~~~~~~~--iP----~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~ 163 (550)
+...+.+.+ +| ++++... +... ...|.+-.+..+...++...+++|.
T Consensus 196 ~~~al~~~g~~vP~di~vvg~d~~---~~~~-~~~p~lttv~~~~~~~g~~a~~~l~ 248 (275)
T 3d8u_A 196 ALFECHRRVLKVPTDIAIICLEGS---SMGE-HAYPSLTSAEFDYERMGTKAAEKLL 248 (275)
T ss_dssp HHHHHHHTTCCTTTTCEEEESSCC---HHHH-TSSSCCEEEECCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCCceEEEecCCc---hHhh-hcCCCcceecCCHHHHHHHHHHHHH
Confidence 444444443 44 6665543 2211 1224455566777777777777664
No 222
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=41.96 E-value=34 Score=31.04 Aligned_cols=82 Identities=10% Similarity=0.022 Sum_probs=54.0
Q ss_pred eEEEEEEEcC--CCCCcchhHHHHHHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcCCCeEEEEEcCCHHHH
Q 008863 168 RRVAAIYEDN--VYGGDSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMT 245 (550)
Q Consensus 168 ~~v~ii~~~~--~~g~~~~~~~~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~~ii~~~~~~~~~ 245 (550)
.+++++..+. .|. ....+.+.+.+++.| ..+..... .... +.......++.+...+.|.||+........
T Consensus 4 ~~Igvi~~~~~~~~~--~~~~~gi~~~a~~~g-~~~~~~~~-~~~~----~~~~~~~~i~~l~~~~vdgiii~~~~~~~~ 75 (297)
T 3rot_A 4 DKYYLITHGSQDPYW--TSLFQGAKKAAEELK-VDLQILAP-PGAN----DVPKQVQFIESALATYPSGIATTIPSDTAF 75 (297)
T ss_dssp CEEEEECSCCCSHHH--HHHHHHHHHHHHHHT-CEEEEECC-SSSC----CHHHHHHHHHHHHHTCCSEEEECCCCSSTT
T ss_pred EEEEEEecCCCCchH--HHHHHHHHHHHHHhC-cEEEEECC-CCcC----CHHHHHHHHHHHHHcCCCEEEEeCCCHHHH
Confidence 3677777653 455 677788888899999 87765331 1001 234455677888888899888834444545
Q ss_pred HHHHHHHHHcCC
Q 008863 246 IHLFTEANRMGL 257 (550)
Q Consensus 246 ~~il~~a~~~g~ 257 (550)
...++++.+.|+
T Consensus 76 ~~~~~~~~~~gi 87 (297)
T 3rot_A 76 SKSLQRANKLNI 87 (297)
T ss_dssp HHHHHHHHHHTC
T ss_pred HHHHHHHHHCCC
Confidence 667888888776
No 223
>2ef0_A Ornithine carbamoyltransferase; TTHA1199, thermus thermophil structural genomics, NPPSFA; 2.00A {Thermus thermophilus}
Probab=41.39 E-value=2.1e+02 Score=26.11 Aligned_cols=132 Identities=17% Similarity=0.228 Sum_probs=79.7
Q ss_pred EEEEEEEecCCccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEc-CCChHHHHHH
Q 008863 35 TKIGAIVDANSQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAG-METWEETAVV 113 (550)
Q Consensus 35 i~IG~i~~~~~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG-~~~s~~~~~v 113 (550)
-.|+.+|-..+ .+...+|+.|..++ ++..+.+...++.-.-.+.+....+.++.- +.+|+- ...... +
T Consensus 46 k~~~~lF~e~S---TRTR~SFe~A~~~L----Gg~~i~l~~~~ss~~kgEsl~DTarvls~~-~D~iviR~~~~~~---~ 114 (301)
T 2ef0_A 46 KVLALLFEKPS---LRTRTTLEVAMVHL----GGHAVYLDQKQVGIGEREPVRDVAKNLERF-VEGIAARVFRHET---V 114 (301)
T ss_dssp CEEEEEESSCC---HHHHHHHHHHHHHT----TCEEEEEEGGGSCTTTCCCHHHHHHHHTTT-CSEEEEECSSHHH---H
T ss_pred CEEEEEeccCC---cchHHHHHHHHHHc----CCeEEEECCcccccCCCCchHHHHHHHHHh-CCEEEEecCChHH---H
Confidence 46788886653 68889999999998 566777655444333233444445555432 334432 223333 3
Q ss_pred HHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHH---HHcC---CeEEEEEEEcCCCCCcchhHH
Q 008863 114 AEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLA---RKYN---WRRVAAIYEDNVYGGDSGKLA 187 (550)
Q Consensus 114 ~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l---~~~~---w~~v~ii~~~~~~g~~~~~~~ 187 (550)
..++...++|+|..+.. .. +-.++++|++ +++| -.+++++.+. ...+.
T Consensus 115 ~~la~~~~vPVINa~~~--------~~------------HPtQaLaDl~Ti~e~~g~l~gl~ia~vGD~------~rva~ 168 (301)
T 2ef0_A 115 EALARHAKVPVVNALSD--------RA------------HPLQALADLLTLKEVFGGLAGLEVAWVGDG------NNVLN 168 (301)
T ss_dssp HHHHHHCSSCEEEEECS--------SC------------CHHHHHHHHHHHHHHHSCCTTCEEEEESCC------CHHHH
T ss_pred HHHHHHCCCCEEeCCCC--------cc------------CchHHHHHHHHHHHHhCCcCCcEEEEECCC------chhHH
Confidence 44556668999995422 11 1246777775 3444 3567776652 34678
Q ss_pred HHHHHHhcCCCeEEEEE
Q 008863 188 LLAEALQNVSSSEIQSR 204 (550)
Q Consensus 188 ~l~~~l~~~g~~~v~~~ 204 (550)
.+...+...| .++...
T Consensus 169 Sl~~~~~~~g-~~v~~~ 184 (301)
T 2ef0_A 169 SLLEVAPLAG-LKVRVA 184 (301)
T ss_dssp HHHHHHHHHT-CEEEEE
T ss_pred HHHHHHHHcC-CEEEEE
Confidence 8888888888 776553
No 224
>3c3k_A Alanine racemase; structural genomics, protein structure initiative, NEW YORK research center for structural genomics, nysgxrc; 1.99A {Actinobacillus succinogenes}
Probab=41.28 E-value=1.3e+02 Score=26.71 Aligned_cols=117 Identities=14% Similarity=0.070 Sum_probs=63.6
Q ss_pred EEEEEEEecC-CccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHH--hhhc-CCeEEEEcCCChHHH
Q 008863 35 TKIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQE--LINK-EKVKVIAGMETWEET 110 (550)
Q Consensus 35 i~IG~i~~~~-~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~--li~~-~~v~aiiG~~~s~~~ 110 (550)
=+||++.... ......-..|++.++++.+ .++.+ . ....+...+.+.+.+ ++.. .++.||+..... .+
T Consensus 125 ~~I~~i~~~~~~~~~~~R~~gf~~~l~~~g-----~~~~~-~-~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~-~A 196 (285)
T 3c3k_A 125 KRIALINHDLAYQYAQHRESGYLNRLKFHG-----LDYSR-I-SYAENLDYMAGKLATFSLLKSAVKPDAIFAISDV-LA 196 (285)
T ss_dssp CCEEEEECCTTSHHHHHHHHHHHHHHHHHT-----CCCCE-E-EECSSSSHHHHHHHHHHHHSSSSCCSEEEESSHH-HH
T ss_pred CeEEEEeCCCccccHHHHHHHHHHHHHHcC-----CCceE-e-ecCCChHHHHHHHHHHHHHcCCCCCeEEEECCHH-HH
Confidence 3577777543 2233455688888888763 22221 2 222334456666777 7764 368899975443 33
Q ss_pred HHHHHhhccCC--cc----EEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHH
Q 008863 111 AVVAEIASRVQ--VP----ILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLAR 163 (550)
Q Consensus 111 ~~v~~~~~~~~--iP----~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~ 163 (550)
..+...+.+.+ +| ++++... +... ...|.+-.+..+...++...+++|.
T Consensus 197 ~g~~~al~~~g~~vP~di~vvg~d~~---~~~~-~~~p~lttv~~~~~~~g~~a~~~l~ 251 (285)
T 3c3k_A 197 AGAIQALTESGLSIPQDVAVVGFDGV---DISQ-ITVPALTTVQQPSEQIGMKAVSLLL 251 (285)
T ss_dssp HHHHHHHHHTTCCTTTTCEEECSBCC---GGGG-TSSSCCBEEECCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCceEEEEeCCh---HHHh-hcCCCceEEeCCHHHHHHHHHHHHH
Confidence 33444444433 34 6666554 2221 1224344566666777777777663
No 225
>3bbl_A Regulatory protein of LACI family; protein structure initiative II, PSI-II, NYSGXRC, transcript regulator, periplasmic binding protein; 2.35A {Chloroflexus aggregans}
Probab=41.17 E-value=1.6e+02 Score=26.19 Aligned_cols=118 Identities=14% Similarity=0.136 Sum_probs=66.1
Q ss_pred EEEEEEecC-CccchhHHHHHHHHHHHHhcCCCCcEEEE-EEecCCCCHHHHHHHHHHhhh-c-C-CeEEEEcCCChHHH
Q 008863 36 KIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSL-QIRDHNRDPFQAATAAQELIN-K-E-KVKVIAGMETWEET 110 (550)
Q Consensus 36 ~IG~i~~~~-~~~g~~~~~a~~~Av~~iN~~~~~~~l~~-~~~d~~~~~~~a~~~~~~li~-~-~-~v~aiiG~~~s~~~ 110 (550)
+||++.... ......-..|++.++++.+ .++.. .+.....+...+.+.+.+++. . . ++.+|+..... .+
T Consensus 127 ~I~~i~~~~~~~~~~~R~~Gf~~~l~~~g-----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ai~~~~d~-~a 200 (287)
T 3bbl_A 127 RIAILAWPEDSRVGNDRLQGYLEAMQTAQ-----LPIETGYILRGEGTFEVGRAMTLHLLDLSPERRPTAIMTLNDT-MA 200 (287)
T ss_dssp CEEEEECCTTCHHHHHHHHHHHHHHHHTT-----CCCCGGGEEECCSSHHHHHHHHHHHHTSCTTTSCSEEEESSHH-HH
T ss_pred eEEEEeCCcccccHHHHHHHHHHHHHHcC-----CCCChhhEEeCCCCHHHHHHHHHHHHhhCCCCCCcEEEECCcH-HH
Confidence 577776543 2223455678888887753 22210 012234566777788888886 4 3 68999975443 33
Q ss_pred HHHHHhhccCC--cc----EEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHH
Q 008863 111 AVVAEIASRVQ--VP----ILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLAR 163 (550)
Q Consensus 111 ~~v~~~~~~~~--iP----~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~ 163 (550)
..+...+.+.+ +| ++++... +... ...|.+-.+..+...++...+++|.
T Consensus 201 ~g~~~al~~~G~~vP~di~vig~d~~---~~~~-~~~p~lttv~~~~~~~g~~a~~~l~ 255 (287)
T 3bbl_A 201 IGAMAAARERGLTIGTDLAIIGFDDA---PMVQ-YLFPPLSSVRQPIAEAGRKCIELLV 255 (287)
T ss_dssp HHHHHHHHHTTCCBTTTBEEEEESCC---TTGG-GSSSCCEEEECCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCCEEEEEECCc---hHhh-ccCCCCceEcCCHHHHHHHHHHHHH
Confidence 33444444433 33 7776655 2221 1224455666677777777777663
No 226
>2rjo_A Twin-arginine translocation pathway signal protei; PSI-2, NYSGXRC, twin arginine translocation pathway signal P structural genomics; HET: GAL; 2.05A {Burkholderia phytofirmans}
Probab=40.95 E-value=1.8e+02 Score=26.51 Aligned_cols=121 Identities=9% Similarity=-0.009 Sum_probs=69.5
Q ss_pred cEEEEEEEecC-CccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhc--CCeEEEEcCCChHHH
Q 008863 34 VTKIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINK--EKVKVIAGMETWEET 110 (550)
Q Consensus 34 ~i~IG~i~~~~-~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~--~~v~aiiG~~~s~~~ 110 (550)
.=+||++.... ......-..|++.++++. ||.++... .....+...+.+.+.+++.. .++.+|+..... .+
T Consensus 136 ~~~I~~i~g~~~~~~~~~R~~Gf~~al~~~----pgi~~~~~-~~~~~~~~~~~~~~~~ll~~~~~~~~aI~~~nd~-~A 209 (332)
T 2rjo_A 136 KGGVVALGGIFSNVPAIERKAGLDAALKKF----PGIQLLDF-QVADWNSQKAFPIMQAWMTRFNSKIKGVWAANDD-MA 209 (332)
T ss_dssp CEEEEEEECCTTCHHHHHHHHHHHHHHHTC----TTEEEEEE-EECTTCHHHHHHHHHHHHHHHGGGEEEEEESSHH-HH
T ss_pred CCeEEEEECCCCCccHHHHHHHHHHHHHhC----CCcEEEee-ccCCCCHHHHHHHHHHHHHhcCCCeeEEEECCCc-hH
Confidence 35788887553 223345567888888753 46665433 33445666777778888763 478999975443 33
Q ss_pred HHHHHhhccC----CccEEeccCCCCCCccc--CCCCCeEEEEecCcHHhHHHHHHHHH
Q 008863 111 AVVAEIASRV----QVPILSFAAPAVTPLSM--SRRWPYLIRMASNDSEQMKCIADLAR 163 (550)
Q Consensus 111 ~~v~~~~~~~----~iP~is~~~~~~~~~~~--~~~~~~~~~~~p~~~~~~~al~~~l~ 163 (550)
..+...+.+. ++.++++... +... -...|.+-.+..+...++...+++|.
T Consensus 210 ~g~~~al~~~G~~~di~vvg~D~~---~~~~~~~~~~~~lttv~~~~~~~g~~av~~l~ 265 (332)
T 2rjo_A 210 LGAIEALRAEGLAGQIPVTGMDGT---QPGLVAIKSGELVASVDWDPFWLGGIGLSMGL 265 (332)
T ss_dssp HHHHHHHHHTTCBTTBCEECSBCC---HHHHHHHHTTSCCBEEECCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCEEEeecCC---HHHHHHHHcCCcEEEEecCHHHHHHHHHHHHH
Confidence 3344444444 4677776654 2211 01113344555666677776666653
No 227
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=40.80 E-value=50 Score=30.76 Aligned_cols=80 Identities=5% Similarity=0.107 Sum_probs=52.9
Q ss_pred CeEEEEEEEcC---CCCCcchhHHHHHHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhc--CCCeEEEEEcCC
Q 008863 167 WRRVAAIYEDN---VYGGDSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQD--KQSRVFIVLQAS 241 (550)
Q Consensus 167 w~~v~ii~~~~---~~g~~~~~~~~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~--~~~~~ii~~~~~ 241 (550)
-.+|+++..+. .|. ....+.+++.+++.| ..+.... ... +.......++.+.. .++|.||+ ...
T Consensus 3 ~~~Ig~i~p~~~~~~f~--~~~~~g~~~~a~~~g-~~~~~~~-~~~------~~~~~~~~i~~~i~~~~~vDgiIi-~~~ 71 (350)
T 3h75_A 3 LTSVVFLNPGNSTETFW--VSYSQFMQAAARDLG-LDLRILY-AER------DPQNTLQQARELFQGRDKPDYLML-VNE 71 (350)
T ss_dssp CCEEEEEECSCTTCHHH--HHHHHHHHHHHHHHT-CEEEEEE-CTT------CHHHHHHHHHHHHHSSSCCSEEEE-ECC
T ss_pred CCEEEEECCCCCCChHH--HHHHHHHHHHHHHcC-CeEEEEE-CCC------CHHHHHHHHHHHHhcCCCCCEEEE-eCc
Confidence 35788888753 355 677788888888888 7776542 111 22334456666666 48898888 555
Q ss_pred HHHHHHHHHHHHHcCC
Q 008863 242 LDMTIHLFTEANRMGL 257 (550)
Q Consensus 242 ~~~~~~il~~a~~~g~ 257 (550)
......+++.+.+.|+
T Consensus 72 ~~~~~~~~~~~~~~gi 87 (350)
T 3h75_A 72 QYVAPQILRLSQGSGI 87 (350)
T ss_dssp SSHHHHHHHHHTTSCC
T ss_pred hhhHHHHHHHHHhCCC
Confidence 5566677888887775
No 228
>1dxh_A Ornithine carbamoyltransferase; transcarbamylase; 2.50A {Pseudomonas aeruginosa} SCOP: c.78.1.1 c.78.1.1 PDB: 1ort_A
Probab=40.61 E-value=2.3e+02 Score=26.33 Aligned_cols=130 Identities=13% Similarity=0.089 Sum_probs=76.0
Q ss_pred EEEEEEEecCCccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCC----CHHHHHHHHHHhhhcCCeEEEEcCCChHHH
Q 008863 35 TKIGAIVDANSQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNR----DPFQAATAAQELINKEKVKVIAGMETWEET 110 (550)
Q Consensus 35 i~IG~i~~~~~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~----~~~~a~~~~~~li~~~~v~aiiG~~~s~~~ 110 (550)
-.|+.+|..++ .+...+|+.|..++ ++..+.+...++.- .....++....+ . .+.++=++ ....
T Consensus 46 k~la~lF~e~S---TRTR~SFE~A~~~L----Gg~~i~l~~~~ss~~kgEsl~DTarvLs~~-~--D~IviR~~-~~~~- 113 (335)
T 1dxh_A 46 KNIALIFEKTS---TRTRCAFEVAAYDQ----GANVTYIDPNSSQIGHKESMKDTARVLGRM-Y--DAIEYRGF-KQEI- 113 (335)
T ss_dssp CEEEEEESSCC---HHHHHHHHHHHHHT----TCEEEEECTTTCCBTTTBCHHHHHHHHHHH-C--SEEEEECS-CHHH-
T ss_pred CEEEEEecCCC---cchHHHHHHHHHHc----CCeEEEECCccccCcCCCcHHHHHHHHHhh-C--CEEEEecC-ChhH-
Confidence 46888887663 68889999999998 45555553333221 223333333333 1 33333343 2233
Q ss_pred HHHHHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHH---HHcC--C--eEEEEEEEcCCCCCcc
Q 008863 111 AVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLA---RKYN--W--RRVAAIYEDNVYGGDS 183 (550)
Q Consensus 111 ~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l---~~~~--w--~~v~ii~~~~~~g~~~ 183 (550)
+..++...++|+|..... .. + -.++++|++ +++| . .+++++.+. . .
T Consensus 114 --~~~lA~~s~vPVINa~~~--------~~-------H-----PtQ~LaDl~Ti~e~~g~~l~gl~va~vGD~--~---~ 166 (335)
T 1dxh_A 114 --VEELAKFAGVPVFNGLTD--------EY-------H-----PTQMLADVLTMREHSDKPLHDISYAYLGDA--R---N 166 (335)
T ss_dssp --HHHHHHHSSSCEEEEECS--------SC-------C-----HHHHHHHHHHHHHTCSSCGGGCEEEEESCC--S---S
T ss_pred --HHHHHHhCCCCEEcCCCC--------CC-------C-----cHHHHHHHHHHHHHcCCCcCCeEEEEecCC--c---c
Confidence 444556668999994422 11 1 247788875 4566 2 356666542 2 3
Q ss_pred hhHHHHHHHHhcCCCeEEEEE
Q 008863 184 GKLALLAEALQNVSSSEIQSR 204 (550)
Q Consensus 184 ~~~~~l~~~l~~~g~~~v~~~ 204 (550)
..+..+...+...| +.+...
T Consensus 167 ~va~Sl~~~~~~~G-~~v~~~ 186 (335)
T 1dxh_A 167 NMGNSLLLIGAKLG-MDVRIA 186 (335)
T ss_dssp HHHHHHHHHHHHTT-CEEEEE
T ss_pred chHHHHHHHHHHcC-CEEEEE
Confidence 57788888888888 876553
No 229
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=40.54 E-value=84 Score=28.98 Aligned_cols=88 Identities=9% Similarity=-0.003 Sum_probs=53.5
Q ss_pred HHHHHHcCCeEEEEEEEc--C--CCCCcchhHHHHHHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcCCCeE
Q 008863 159 ADLARKYNWRRVAAIYED--N--VYGGDSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRV 234 (550)
Q Consensus 159 ~~~l~~~~w~~v~ii~~~--~--~~g~~~~~~~~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~~ 234 (550)
+.-++..+-+.++++..+ . .|. ....+.+.+.+.+.| ..+..... .. +.......++.+.+.+.|.
T Consensus 53 a~~l~~~~~~~Igvi~~~~~~~~~~~--~~~~~gi~~~a~~~g-~~~~~~~~-~~------~~~~~~~~~~~l~~~~vdg 122 (338)
T 3dbi_A 53 ARNLSAKSTQTLGLVVTNTLYHGIYF--SELLFHAARMAEEKG-RQLLLADG-KH------SAEEERQAIQYLLDLRCDA 122 (338)
T ss_dssp -------CCSEEEEEECTTTTSTTHH--HHHHHHHHHHHHHTT-CEEEEEEC-TT------SHHHHHHHHHHHHHTTCSE
T ss_pred HHHhhhCCCCEEEEEecCCcccChhH--HHHHHHHHHHHHHCC-CEEEEEeC-CC------ChHHHHHHHHHHHhCCCCE
Confidence 333444455789999876 2 354 677888889999999 87765431 11 2234455778888889999
Q ss_pred EEEEcCCHHHHHHHHHHHHHcCC
Q 008863 235 FIVLQASLDMTIHLFTEANRMGL 257 (550)
Q Consensus 235 ii~~~~~~~~~~~il~~a~~~g~ 257 (550)
||+ .........+...+.+.++
T Consensus 123 iIi-~~~~~~~~~~~~~~~~~~i 144 (338)
T 3dbi_A 123 IMI-YPRFLSVDEIDDIIDAHSQ 144 (338)
T ss_dssp EEE-CCSSSCHHHHHHHHHHCSS
T ss_pred EEE-eCCCCChHHHHHHHHcCCC
Confidence 998 5443333445666666664
No 230
>3p6l_A Sugar phosphate isomerase/epimerase; TIM barrel, structural genomics, joint center for structural genomics, JCSG; HET: CIT; 1.85A {Parabacteroides distasonis}
Probab=40.46 E-value=1.5e+02 Score=25.90 Aligned_cols=94 Identities=6% Similarity=-0.050 Sum_probs=66.1
Q ss_pred HHHHHHHHHHcCCeEEEEEEEc------------CCCCCcchhHHHHHHHHhcCCCeEEEEEeecCCCCCCCCChHHHHH
Q 008863 155 MKCIADLARKYNWRRVAAIYED------------NVYGGDSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRG 222 (550)
Q Consensus 155 ~~al~~~l~~~~w~~v~ii~~~------------~~~g~~~~~~~~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~ 222 (550)
....++.+...|.+.|=+.... .... ....+.+++.+++.| +++......... ....+..
T Consensus 24 ~~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~g-l~i~~~~~~~~~-----~~~~~~~ 95 (262)
T 3p6l_A 24 LTEALDKTQELGLKYIEIYPGHKLGGKWGDKVFDFNLD--AQTQKEIKELAASKG-IKIVGTGVYVAE-----KSSDWEK 95 (262)
T ss_dssp HHHHHHHHHHTTCCEEEECTTEECCGGGTTCEESTTCC--HHHHHHHHHHHHHTT-CEEEEEEEECCS-----STTHHHH
T ss_pred HHHHHHHHHHcCCCEEeecCCcccccccccccccccCC--HHHHHHHHHHHHHcC-CeEEEEeccCCc-----cHHHHHH
Confidence 4556777788898888776432 1122 345788999999999 988765543221 3356788
Q ss_pred HHHHhhcCCCeEEEEEcCCHHHHHHHHHHHHHcCC
Q 008863 223 ELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGL 257 (550)
Q Consensus 223 ~l~~i~~~~~~~ii~~~~~~~~~~~il~~a~~~g~ 257 (550)
.++..+..+++.|++ ....+....+...|.+.|+
T Consensus 96 ~i~~A~~lGa~~v~~-~~~~~~~~~l~~~a~~~gv 129 (262)
T 3p6l_A 96 MFKFAKAMDLEFITC-EPALSDWDLVEKLSKQYNI 129 (262)
T ss_dssp HHHHHHHTTCSEEEE-CCCGGGHHHHHHHHHHHTC
T ss_pred HHHHHHHcCCCEEEe-cCCHHHHHHHHHHHHHhCC
Confidence 888888889999998 7666666777777777765
No 231
>1ml4_A Aspartate transcarbamoylase; beta pleated sheet, protein inhibitor complex, transferase; HET: PAL; 1.80A {Pyrococcus abyssi} SCOP: c.78.1.1 c.78.1.1
Probab=40.35 E-value=1.5e+02 Score=27.25 Aligned_cols=134 Identities=12% Similarity=0.136 Sum_probs=77.6
Q ss_pred EEEEEEEecCCccchhHHHHHHHHHHHHhcCCCCcEEEEEEec-CCCCHHHHHHHHHHhhhcCCeEEEE--cCCChHHHH
Q 008863 35 TKIGAIVDANSQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRD-HNRDPFQAATAAQELINKEKVKVIA--GMETWEETA 111 (550)
Q Consensus 35 i~IG~i~~~~~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d-~~~~~~~a~~~~~~li~~~~v~aii--G~~~s~~~~ 111 (550)
-.|+.+|-..+ .+....|+.|+.++ ++..+.+...+ +.-.-.+.+....+.++.- +.+|+ .+. ...
T Consensus 45 k~l~~lF~e~S---TRTR~SFe~A~~~L----Gg~~i~l~~~~~s~~~kgEsl~DTarvls~~-~D~iviR~~~-~~~-- 113 (308)
T 1ml4_A 45 KILATLFFEPS---TRTRLSFESAMHRL----GGAVIGFAEASTSSVKKGESLRDTIKTVEQY-CDVIVIRHPK-EGA-- 113 (308)
T ss_dssp CEEEEEESSCC---SHHHHHHHHHHHHT----TCEEEEESCGGGSGGGGTCCHHHHHHHHTTT-CSEEEEEESS-TTH--
T ss_pred CEEEEEecCCC---chHHHHHHHHHHHh----CCeEEEeCCCccccccCCCCHHHHHHHHHHh-CcEEEEecCC-hhH--
Confidence 35788887663 68889999999998 45566554433 2211123333344444432 33333 332 223
Q ss_pred HHHHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHH---HHcCC---eEEEEEEEcCCCCCcchh
Q 008863 112 VVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLA---RKYNW---RRVAAIYEDNVYGGDSGK 185 (550)
Q Consensus 112 ~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l---~~~~w---~~v~ii~~~~~~g~~~~~ 185 (550)
+..+++...+|+|..+.. + .. +-.++++|++ +++|- .+|+++.+- .+ ...
T Consensus 114 -~~~la~~~~vPVINag~g--~-----~~------------HPtQ~LaDl~Ti~e~~g~l~gl~va~vGD~-~~---~rv 169 (308)
T 1ml4_A 114 -ARLAAEVAEVPVINAGDG--S-----NQ------------HPTQTLLDLYTIKKEFGRIDGLKIGLLGDL-KY---GRT 169 (308)
T ss_dssp -HHHHHHTCSSCEEEEEET--T-----SC------------CHHHHHHHHHHHHHHSSCSSSEEEEEESCT-TT---CHH
T ss_pred -HHHHHHhCCCCEEeCccC--C-----cc------------CcHHHHHHHHHHHHHhCCCCCeEEEEeCCC-Cc---Cch
Confidence 344556678999986653 1 11 1247778875 45542 466666532 22 257
Q ss_pred HHHHHHHHhcCCCeEEEEE
Q 008863 186 LALLAEALQNVSSSEIQSR 204 (550)
Q Consensus 186 ~~~l~~~l~~~g~~~v~~~ 204 (550)
+..+...+...| .++...
T Consensus 170 a~Sl~~~~~~~G-~~v~~~ 187 (308)
T 1ml4_A 170 VHSLAEALTFYD-VELYLI 187 (308)
T ss_dssp HHHHHHHGGGSC-EEEEEE
T ss_pred HHHHHHHHHHCC-CEEEEE
Confidence 888888899989 877653
No 232
>1oth_A Protein (ornithine transcarbamoylase); transferase; HET: PAO; 1.85A {Homo sapiens} SCOP: c.78.1.1 c.78.1.1 PDB: 1ep9_A 1fvo_A 1c9y_A* 1fb5_A
Probab=40.12 E-value=1.8e+02 Score=26.76 Aligned_cols=131 Identities=13% Similarity=0.176 Sum_probs=75.2
Q ss_pred EEEEEEEecCCccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcC-CeEEEEcCCChHHHHHH
Q 008863 35 TKIGAIVDANSQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKE-KVKVIAGMETWEETAVV 113 (550)
Q Consensus 35 i~IG~i~~~~~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~-~v~aiiG~~~s~~~~~v 113 (550)
-.|+.+|-..+ .+...+|+.|..++ ++..+.+...++.-.-.+.+....+.++.- .+.++=.+ .... +
T Consensus 47 k~l~~lF~e~S---TRTR~SFe~A~~~L----Gg~~i~l~~~~ss~~kgEsl~DTarvls~~~D~iviR~~-~~~~---~ 115 (321)
T 1oth_A 47 KSLGMIFEKRS---TRTRLSTETGFALL----GGHPCFLTTQDIHLGVNESLTDTARVLSSMADAVLARVY-KQSD---L 115 (321)
T ss_dssp CEEEEEESSCC---SHHHHHHHHHHHHT----TCEEEEEETTTSCBTTTBCHHHHHHHHHHHCSEEEEECS-CHHH---H
T ss_pred CEEEEEecCCC---cchHHHHHHHHHHc----CCeEEEECCCcCcCCCCCCHHHHHHHHHHhCCEEEEeCC-ChhH---H
Confidence 46788886653 58889999999998 566666644333221112222222333221 23333333 3333 3
Q ss_pred HHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHH---HHcC---CeEEEEEEEcCCCCCcchhHH
Q 008863 114 AEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLA---RKYN---WRRVAAIYEDNVYGGDSGKLA 187 (550)
Q Consensus 114 ~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l---~~~~---w~~v~ii~~~~~~g~~~~~~~ 187 (550)
..++....+|+|..+.. .. + -.++++|++ +++| -.+|+++.+ + ...+.
T Consensus 116 ~~lA~~~~vPVINa~~~--------~~-------H-----PtQaLaDl~Ti~e~~g~l~gl~va~vGD----~--~~va~ 169 (321)
T 1oth_A 116 DTLAKEASIPIINGLSD--------LY-------H-----PIQILADYLTLQEHYSSLKGLTLSWIGD----G--NNILH 169 (321)
T ss_dssp HHHHHHCSSCEEESCCS--------SC-------C-----HHHHHHHHHHHHHHHSCCTTCEEEEESC----S--SHHHH
T ss_pred HHHHHhCCCCEEcCCCC--------CC-------C-----cHHHHHHHHHHHHHhCCcCCcEEEEECC----c--hhhHH
Confidence 44556678999994421 11 1 246777775 3444 347777665 2 34678
Q ss_pred HHHHHHhcCCCeEEEE
Q 008863 188 LLAEALQNVSSSEIQS 203 (550)
Q Consensus 188 ~l~~~l~~~g~~~v~~ 203 (550)
.+...+...| .++..
T Consensus 170 Sl~~~~~~~G-~~v~~ 184 (321)
T 1oth_A 170 SIMMSAAKFG-MHLQA 184 (321)
T ss_dssp HHHTTTGGGT-CEEEE
T ss_pred HHHHHHHHcC-CeEEE
Confidence 8888888888 77754
No 233
>1tjy_A Sugar transport protein; protein-ligand complex, signaling protein; HET: PAV; 1.30A {Salmonella typhimurium} SCOP: c.93.1.1 PDB: 1tm2_A 3t95_A* 3ejw_A*
Probab=39.01 E-value=44 Score=30.69 Aligned_cols=81 Identities=15% Similarity=0.032 Sum_probs=50.8
Q ss_pred eEEEEEEEcC--CCCCcchhHHHHHHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcCCCeEEEEEcCCHHHH
Q 008863 168 RRVAAIYEDN--VYGGDSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMT 245 (550)
Q Consensus 168 ~~v~ii~~~~--~~g~~~~~~~~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~~ii~~~~~~~~~ 245 (550)
++|+++..+. .|. ....+.+++.+++.| .++.... +... +.......++.+...+.+.||+.......+
T Consensus 4 ~~Igvi~~~~~~~~~--~~~~~g~~~~~~~~g-~~~~~~~--~~~~----d~~~q~~~i~~li~~~vdgiii~~~~~~~~ 74 (316)
T 1tjy_A 4 ERIAFIPKLVGVGFF--TSGGNGAQEAGKALG-IDVTYDG--PTEP----SVSGQVQLVNNFVNQGYDAIIVSAVSPDGL 74 (316)
T ss_dssp CEEEEECSSSSSHHH--HHHHHHHHHHHHHHT-CEEEECC--CSSC----CHHHHHHHHHHHHHTTCSEEEECCSSSSTT
T ss_pred CEEEEEeCCCCChHH--HHHHHHHHHHHHHhC-CEEEEEC--CCCC----CHHHHHHHHHHHHHcCCCEEEEeCCCHHHH
Confidence 4677877543 355 666777888888888 7765321 1111 223445667777777899988823344444
Q ss_pred HHHHHHHHHcCC
Q 008863 246 IHLFTEANRMGL 257 (550)
Q Consensus 246 ~~il~~a~~~g~ 257 (550)
...++.+.+.|+
T Consensus 75 ~~~~~~a~~~gi 86 (316)
T 1tjy_A 75 CPALKRAMQRGV 86 (316)
T ss_dssp HHHHHHHHHTTC
T ss_pred HHHHHHHHHCcC
Confidence 567788888775
No 234
>2h0a_A TTHA0807, transcriptional regulator; repressor, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Thermus thermophilus}
Probab=38.79 E-value=1.8e+02 Score=25.38 Aligned_cols=116 Identities=13% Similarity=0.065 Sum_probs=63.3
Q ss_pred EEEEEEecC-----Cccch-hHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhc-CCeEEEEcCCChH
Q 008863 36 KIGAIVDAN-----SQMGK-QAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINK-EKVKVIAGMETWE 108 (550)
Q Consensus 36 ~IG~i~~~~-----~~~g~-~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~-~~v~aiiG~~~s~ 108 (550)
+||++.... ..... .-..|++.++++.+-.... .. +.....+...+.+.+.+++.. ..+.+|+.... .
T Consensus 116 ~i~~i~~~~~~~~~~~~~~~~R~~gf~~~l~~~g~~~~~---~~-~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d-~ 190 (276)
T 2h0a_A 116 IFAIAVEEEPDRAFRRTVFAERMAGFQEALKEAGRPFSP---DR-LYITRHSQEGGRLALRHFLEKASPPLNVFAGAD-Q 190 (276)
T ss_dssp EEEEEECCSCCC---CCHHHHHHHHHHHHHHHTTCCCCG---GG-EEEECSSHHHHHHHHHHHHTTCCSSEEEECSSH-H
T ss_pred eEEEEecCcccccccchhHHHHHHHHHHHHHHcCCCCCh---HH-eeecCCChHHHHHHHHHHHhCCCCCCEEEECCc-H
Confidence 788887654 23345 5678898888875322111 11 112234566677778888864 35899996533 3
Q ss_pred HHHHHHHhhccCC--cc----EEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHH
Q 008863 109 ETAVVAEIASRVQ--VP----ILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLA 162 (550)
Q Consensus 109 ~~~~v~~~~~~~~--iP----~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l 162 (550)
.+..+...+.+.+ +| ++++... +..... . +-.+..+...++...++++
T Consensus 191 ~a~g~~~al~~~g~~vP~di~vvg~d~~---~~~~~~--~-lttv~~~~~~~g~~a~~~l 244 (276)
T 2h0a_A 191 VALGVLEEAVRLGLTPGRDVRVLGFDGH---PFAEEA--G-LSTIAQPVEAMGARAAQLL 244 (276)
T ss_dssp HHHHHHHHHHTTSCTTTTSEEEEEESCC---THHHHH--T-CEEEECCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCeEEEEeCCC---chhhhc--c-eeEecCCHHHHHHHHHHHH
Confidence 3444444555444 44 6665544 221111 1 3445556666666666655
No 235
>2vvt_A Glutamate racemase; isomerase, peptidoglycan synthesis, cell WALL biogenesis/degradation, cell shape, benzyl purine, MURI inhibitor; HET: I24 DGL; 1.65A {Enterococcus faecalis} PDB: 2jfp_A* 2jfo_A* 2jfu_A 2jfv_A* 2jfw_A*
Probab=38.68 E-value=96 Score=28.17 Aligned_cols=35 Identities=14% Similarity=0.329 Sum_probs=23.2
Q ss_pred hhcCCeEEEEcCCChHHHHHHHHhhccCCccEEec
Q 008863 93 INKEKVKVIAGMETWEETAVVAEIASRVQVPILSF 127 (550)
Q Consensus 93 i~~~~v~aiiG~~~s~~~~~v~~~~~~~~iP~is~ 127 (550)
+.+.++.+|+-+-++..+..+..+-+..++|+|..
T Consensus 82 L~~~g~d~IVIACNTas~~~l~~lr~~~~iPVigi 116 (290)
T 2vvt_A 82 LLKKRIKMLVIACNTATAVALEEIKAALPIPVVGV 116 (290)
T ss_dssp HHTTTCSEEEECCHHHHHHHHHHHHHHCSSCEEES
T ss_pred HHHCCCCEEEEeCcchhHHHHHHHHHhCCCCEEcc
Confidence 33468988886544444345666667789999873
No 236
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=38.63 E-value=1.9e+02 Score=25.82 Aligned_cols=121 Identities=12% Similarity=-0.001 Sum_probs=68.2
Q ss_pred EEEEEEEecC-CccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhc-CCeEEEEcCCChHHHHH
Q 008863 35 TKIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINK-EKVKVIAGMETWEETAV 112 (550)
Q Consensus 35 i~IG~i~~~~-~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~-~~v~aiiG~~~s~~~~~ 112 (550)
=+||++.... ......-..|++.|+++.+-.. .... +.....+...+.+.+.+++.. .++.||+..... .+..
T Consensus 127 ~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~---~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~nd~-~A~g 201 (294)
T 3qk7_A 127 QRIAFVSTDARISYVDQRLQGYVQTMSEAGLMP---LAGY-LQKADPTRPGGYLAASRLLALEVPPTAIITDCNM-LGDG 201 (294)
T ss_dssp CCEEEEEESSCCHHHHHHHHHHHHHHHTTTCCC---CTTC-EEEECSSHHHHHHHHHHHHHSSSCCSEEEESSHH-HHHH
T ss_pred ceEEEEeCCcccchHHHHHHHHHHHHHHCCCCC---ChhH-eecCCCCHHHHHHHHHHHHcCCCCCcEEEECCHH-HHHH
Confidence 3677776554 2223345678887777653221 1111 122345667777888888864 578899975443 3333
Q ss_pred HHHhhccCC--cc----EEeccCCCCCCcccCCCCCeEEEEecCc-HHhHHHHHHHHHH
Q 008863 113 VAEIASRVQ--VP----ILSFAAPAVTPLSMSRRWPYLIRMASND-SEQMKCIADLARK 164 (550)
Q Consensus 113 v~~~~~~~~--iP----~is~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~~al~~~l~~ 164 (550)
+...+.+.+ +| ++++... +. .....|-+-.+..+. ..+++..+++|..
T Consensus 202 ~~~al~~~G~~vP~di~vig~D~~---~~-~~~~~p~lttv~~~~~~~~g~~av~~L~~ 256 (294)
T 3qk7_A 202 VASALDKAGLLGGEGISLIAYDGL---PD-DSLLDIAVTPIVQNTRTSVGKQIASMICD 256 (294)
T ss_dssp HHHHHHHTTCSSTTSCEEEEETCS---CT-TCSCCSCCEEEECCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCCceEEEeecCc---cH-HhhcCCCceeEecCcHHHHHHHHHHHHHH
Confidence 444444443 33 6666644 22 222234455677777 6788877777643
No 237
>1dbq_A Purine repressor; transcription regulation, DNA-binding regulatory protein; 2.20A {Escherichia coli} SCOP: c.93.1.1 PDB: 1jhz_A
Probab=38.62 E-value=1.2e+02 Score=26.86 Aligned_cols=118 Identities=13% Similarity=0.114 Sum_probs=61.8
Q ss_pred EEEEEEecC-CccchhHHHHHHHHHHHHhcCCCCcEEEEE-EecCCCCHHHHHHHHHHhhhc-CCeEEEEcCCChHHHHH
Q 008863 36 KIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQ-IRDHNRDPFQAATAAQELINK-EKVKVIAGMETWEETAV 112 (550)
Q Consensus 36 ~IG~i~~~~-~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~-~~d~~~~~~~a~~~~~~li~~-~~v~aiiG~~~s~~~~~ 112 (550)
+|+++.... ......-..|++.++++.+- ++... +.....+...+.+.+.+++.. .++.+|+..... .+..
T Consensus 128 ~i~~i~~~~~~~~~~~R~~g~~~~l~~~g~-----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~-~a~g 201 (289)
T 1dbq_A 128 EIGVIPGPLERNTGAGRLAGFMKAMEEAMI-----KVPESWIVQGDFEPESGYRAMQQILSQPHRPTAVFCGGDI-MAMG 201 (289)
T ss_dssp SEEEECCC------CHHHHHHHHHHHHTTC-----CCCGGGBCCCCSSHHHHHHHHHHHHTSSSCCSEEEESCHH-HHHH
T ss_pred eEEEEecCCccccHHHHHHHHHHHHHHCCC-----CCChHHeEeCCCCHHHHHHHHHHHHhCCCCCCEEEECCcH-HHHH
Confidence 466665432 22234456777777776431 21110 122334566677778888864 468899975443 3333
Q ss_pred HHHhhccCC--cc----EEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHH
Q 008863 113 VAEIASRVQ--VP----ILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLAR 163 (550)
Q Consensus 113 v~~~~~~~~--iP----~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~ 163 (550)
+...+.+.+ +| ++++... +.... ..|.+-.+..+...++...++.+.
T Consensus 202 ~~~al~~~G~~vP~di~vvg~d~~---~~~~~-~~p~lttv~~~~~~~g~~a~~~l~ 254 (289)
T 1dbq_A 202 ALCAADEMGLRVPQDVSLIGYDNV---RNARY-FTPALTTIHQPKDSLGETAFNMLL 254 (289)
T ss_dssp HHHHHHHTTCCTTTTCEEEEEECC---TTGGG-SSSCCEEEECCSHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCCceEEEeeCCc---hHhcc-CCCccccccCCHHHHHHHHHHHHH
Confidence 444444443 34 7777765 22211 123345566666777777666653
No 238
>1ta9_A Glycerol dehydrogenase; oxidoredu; 1.90A {Schizosaccharomyces pombe}
Probab=38.56 E-value=68 Score=31.41 Aligned_cols=97 Identities=12% Similarity=0.096 Sum_probs=60.4
Q ss_pred HHHHHHHHHcCCeEEEEEEEcCCCCCcchhHHHHHHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcCCCeEE
Q 008863 156 KCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVF 235 (550)
Q Consensus 156 ~al~~~l~~~~w~~v~ii~~~~~~g~~~~~~~~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~~i 235 (550)
..+.++++.++.+++.+|++.... ....+.+.+.+++.| +.+... .+.... ..+......+.+++ ++|.|
T Consensus 80 ~~l~~~l~~~g~~rvlIVtd~~~~---~~~~~~v~~~L~~~g-i~~~~~-~~~ge~----~~~~v~~~~~~~~~-~~D~I 149 (450)
T 1ta9_A 80 TRSYMYVKKWATKSAVVLADQNVW---NICANKIVDSLSQNG-MTVTKL-VFGGEA----SLVELDKLRKQCPD-DTQVI 149 (450)
T ss_dssp GGHHHHHTTTCSSEEEEEEEHHHH---HHTHHHHHHHHHHTT-CEEEEE-EECSCC----CHHHHHHHHTTSCT-TCCEE
T ss_pred HHHHHHHHhcCCCEEEEEECccHH---HHHHHHHHHHHHHCC-CeEEEE-eeCCCC----CHHHHHHHHHHHhh-CCCEE
Confidence 346677777786699999986543 335788888898888 877432 233322 34566777777777 89999
Q ss_pred EEEcCC--HHHHHHHHHHHHHcCCCCCCEEEEEec
Q 008863 236 IVLQAS--LDMTIHLFTEANRMGLVGKDSVWIVTN 268 (550)
Q Consensus 236 i~~~~~--~~~~~~il~~a~~~g~~~~~~~~i~~~ 268 (550)
|- .+. .-++..++... .+ ..++-|.|.
T Consensus 150 IA-vGGGSviD~AK~iA~~--~g---iP~I~IPTT 178 (450)
T 1ta9_A 150 IG-VGGGKTMDSAKYIAHS--MN---LPSIICPTT 178 (450)
T ss_dssp EE-EESHHHHHHHHHHHHH--TT---CCEEEEESS
T ss_pred EE-eCCcHHHHHHHHHHHh--cC---CCEEEEeCC
Confidence 86 333 34555555422 22 335555554
No 239
>2qip_A Protein of unknown function VPA0982; APC85975, vibrio parahaemolyticus RIMD 2210633, STR genomics, PSI-2, protein structure initiative; 1.48A {Vibrio parahaemolyticus}
Probab=38.27 E-value=1.4e+02 Score=24.24 Aligned_cols=97 Identities=11% Similarity=-0.021 Sum_probs=52.6
Q ss_pred HHHHHHHHHcCCeEEEEEEEcCCCCCcchhHHHHHHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhh-cCCCeE
Q 008863 156 KCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQ-DKQSRV 234 (550)
Q Consensus 156 ~al~~~l~~~~w~~v~ii~~~~~~g~~~~~~~~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~-~~~~~~ 234 (550)
..+.+.+...+--..+..|.+ ..+ ....+.+.+.+...| +++.................|..-.+.-+. ....+.
T Consensus 36 ~~l~~~~~~~g~l~~~~~Y~~-~~~--~~~~~~~~~~L~~~g-~~v~~~p~~~~~~~~~k~~~Dv~laiD~~~~a~~~d~ 111 (165)
T 2qip_A 36 NQFWYVATQEKEVVSAKAYAI-ASN--DPKQRQFHHILRGVG-FEVMLKPYIQRRDGSAKGDWDVGITLDAIEIAPDVDR 111 (165)
T ss_dssp HHHHHHHTTTEEEEEEEEEEC-CCC--CHHHHHHHHHHHHHT-CEEEECCCCCCSSCCCSCCCHHHHHHHHHHHGGGCSE
T ss_pred HHHHHHHhcCCEEEEEEEEEc-cCC--chhHHHHHHHHHHCC-cEEEEEeeeeccCCccCCCccHHHHHHHHHhhccCCE
Confidence 355555555554445556633 222 345677888899999 887643211100000112234332222221 135677
Q ss_pred EEEEcCCHHHHHHHHHHHHHc-CC
Q 008863 235 FIVLQASLDMTIHLFTEANRM-GL 257 (550)
Q Consensus 235 ii~~~~~~~~~~~il~~a~~~-g~ 257 (550)
+++ .+...+...+++.+++. |.
T Consensus 112 ~vL-vSgD~DF~plv~~lr~~~G~ 134 (165)
T 2qip_A 112 VIL-VSGDGDFSLLVERIQQRYNK 134 (165)
T ss_dssp EEE-ECCCGGGHHHHHHHHHHHCC
T ss_pred EEE-EECChhHHHHHHHHHHHcCc
Confidence 777 55566888889999994 86
No 240
>2dwu_A Glutamate racemase; isomerase; HET: DGL; 1.60A {Bacillus anthracis}
Probab=37.70 E-value=2.2e+02 Score=25.42 Aligned_cols=36 Identities=14% Similarity=0.303 Sum_probs=23.4
Q ss_pred HhhhcCCeEEEEcCCChHHHHHHHHhhccCCccEEe
Q 008863 91 ELINKEKVKVIAGMETWEETAVVAEIASRVQVPILS 126 (550)
Q Consensus 91 ~li~~~~v~aiiG~~~s~~~~~v~~~~~~~~iP~is 126 (550)
+.+.+.++.+|+-+-++.++..+..+-+..++|+|.
T Consensus 63 ~~L~~~g~d~IViACNTas~~~l~~lr~~~~iPVig 98 (276)
T 2dwu_A 63 EFLKQFPLKALVVACNTAAAATLAALQEALSIPVIG 98 (276)
T ss_dssp HHHTTSCEEEEEECCHHHHHHHHHHHHHHCSSCEEE
T ss_pred HHHHHCCCCEEEEeCCcHHHHHHHHHHHHCCCCEEe
Confidence 333447899988654444434566666777899886
No 241
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=37.66 E-value=1.1e+02 Score=21.80 Aligned_cols=100 Identities=16% Similarity=0.196 Sum_probs=52.8
Q ss_pred CeEEEEecCcHHhHHHHHHHHHHcCCeEEEEEEEcCCCCCcchhHHHHHHHHhcCCCeEEEEEeecCCCCCCCCChHHHH
Q 008863 142 PYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVR 221 (550)
Q Consensus 142 ~~~~~~~p~~~~~~~al~~~l~~~~w~~v~ii~~~~~~g~~~~~~~~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~ 221 (550)
.+-.|+.-+...+-..+-+++++|+.+-+.++.+|.+| ++......+..| -++.... +.. +...+.
T Consensus 26 gfkvrtvrspqelkdsieelvkkynativvvvvddkew------aekairfvkslg-aqvliii-ydq------dqnrle 91 (134)
T 2l69_A 26 GFKVRTVRSPQELKDSIEELVKKYNATIVVVVVDDKEW------AEKAIRFVKSLG-AQVLIII-YDQ------DQNRLE 91 (134)
T ss_dssp TCEEEEECSHHHHHHHHHHHTTCCCCEEEEEECSSHHH------HHHHHHHHHHHC-CCCEEEE-ECS------CHHHHH
T ss_pred CceEEEecCHHHHHHHHHHHHHHhCCeEEEEEEccHHH------HHHHHHHHHhcC-CeEEEEE-EeC------chhHHH
Confidence 45667777777777777778888887777777765444 222223333333 3322222 222 223344
Q ss_pred HHHHHhhcCCCeEEEEEcCCHHHHHH-HHHHHHHcCC
Q 008863 222 GELKKVQDKQSRVFIVLQASLDMTIH-LFTEANRMGL 257 (550)
Q Consensus 222 ~~l~~i~~~~~~~ii~~~~~~~~~~~-il~~a~~~g~ 257 (550)
+.-+++++.+-.+--+ .++++... +-+-.++.|-
T Consensus 92 efsrevrrrgfevrtv--tspddfkkslerlirevgs 126 (134)
T 2l69_A 92 EFSREVRRRGFEVRTV--TSPDDFKKSLERLIREVGS 126 (134)
T ss_dssp HHHHHHHHTTCCEEEE--SSHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHhcCceEEEe--cChHHHHHHHHHHHHHhcc
Confidence 4555666666665555 34444433 3333444553
No 242
>2h3h_A Sugar ABC transporter, periplasmic sugar-binding protein; glucose binding protein, periplasmic binding protein, GBP; HET: BGC; 1.70A {Thermotoga maritima} PDB: 2qvc_A* 3c6q_B*
Probab=37.22 E-value=63 Score=29.44 Aligned_cols=80 Identities=14% Similarity=0.064 Sum_probs=46.3
Q ss_pred EEEEEEEcCC-CCCcchhHHHHHHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcCCCeEEEEEcCCHHHHHH
Q 008863 169 RVAAIYEDNV-YGGDSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIH 247 (550)
Q Consensus 169 ~v~ii~~~~~-~g~~~~~~~~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~~ii~~~~~~~~~~~ 247 (550)
+++++..+.. |. ....+.+++.+++.| ..+.... .... +.......++.+...+.+.||+..........
T Consensus 3 ~Ig~i~~~~~~~~--~~~~~gi~~~~~~~g-~~~~~~~--~~~~----~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~ 73 (313)
T 2h3h_A 3 TIGVIGKSVHPYW--SQVEQGVKAAGKALG-VDTKFFV--PQKE----DINAQLQMLESFIAEGVNGIAIAPSDPTAVIP 73 (313)
T ss_dssp EEEEECSCSSHHH--HHHHHHHHHHHHHHT-CEEEEEC--CSSS----CHHHHHHHHHHHHHTTCSEEEECCSSTTTTHH
T ss_pred EEEEEeCCCcHHH--HHHHHHHHHHHHHcC-CEEEEEC--CCCC----CHHHHHHHHHHHHHcCCCEEEEeCCChHHHHH
Confidence 4666654322 55 666777777888888 7765432 1111 22344556677766788888872333333345
Q ss_pred HHHHHHHcCC
Q 008863 248 LFTEANRMGL 257 (550)
Q Consensus 248 il~~a~~~g~ 257 (550)
.++.+.+.|+
T Consensus 74 ~~~~~~~~~i 83 (313)
T 2h3h_A 74 TIKKALEMGI 83 (313)
T ss_dssp HHHHHHHTTC
T ss_pred HHHHHHHCCC
Confidence 6677777665
No 243
>2pjk_A 178AA long hypothetical molybdenum cofactor biosynthesis protein B; 3D-structure, structural genomics, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii} PDB: 3iwt_A*
Probab=36.27 E-value=1.8e+02 Score=24.02 Aligned_cols=66 Identities=11% Similarity=-0.007 Sum_probs=43.0
Q ss_pred cCCeEEEEEEEcCC------C-C-CcchhHHHHHHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcC-CCeEE
Q 008863 165 YNWRRVAAIYEDNV------Y-G-GDSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDK-QSRVF 235 (550)
Q Consensus 165 ~~w~~v~ii~~~~~------~-g-~~~~~~~~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~-~~~~i 235 (550)
+.--++++|...|+ . | -.......+.+.+++.| .++.....++. +.+.+...+++..+. ++|+|
T Consensus 13 ~~~~rv~IittGde~~~~~~~~G~i~Dsn~~~L~~~l~~~G-~~v~~~~iv~D------d~~~I~~al~~a~~~~~~DlV 85 (178)
T 2pjk_A 13 PKSLNFYVITISTSRYEKLLKKEPIVDESGDIIKQLLIENG-HKIIGYSLVPD------DKIKILKAFTDALSIDEVDVI 85 (178)
T ss_dssp CCCCEEEEEEECHHHHHHHHTTCCCCCHHHHHHHHHHHHTT-CEEEEEEEECS------CHHHHHHHHHHHHTCTTCCEE
T ss_pred CCCCEEEEEEeCcccccccccCCeEeehHHHHHHHHHHHCC-CEEEEEEEeCC------CHHHHHHHHHHHHhcCCCCEE
Confidence 34457787776641 0 1 01344567888888899 88877665654 346677777776654 58999
Q ss_pred EE
Q 008863 236 IV 237 (550)
Q Consensus 236 i~ 237 (550)
|.
T Consensus 86 it 87 (178)
T 2pjk_A 86 IS 87 (178)
T ss_dssp EE
T ss_pred EE
Confidence 88
No 244
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=36.23 E-value=1.5e+02 Score=27.27 Aligned_cols=119 Identities=9% Similarity=0.050 Sum_probs=65.9
Q ss_pred EEEEEEecC--CccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhc-CCeEEEEcCCChHHHHH
Q 008863 36 KIGAIVDAN--SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINK-EKVKVIAGMETWEETAV 112 (550)
Q Consensus 36 ~IG~i~~~~--~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~-~~v~aiiG~~~s~~~~~ 112 (550)
+||++.... ......-..|++.|+++.+-. .. ...+.....+...+.+.+.+++.. .++.||+..... .+..
T Consensus 187 ~I~~i~~~~~~~~~~~~R~~Gf~~al~~~g~~---~~-~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ai~~~nd~-~A~g 261 (344)
T 3kjx_A 187 RIGFMGTKMPLDYRARKRFEGFTEVLGKNGVE---IE-DREFYSGGSALAKGREMTQAMLERSPDLDFLYYSNDM-IAAG 261 (344)
T ss_dssp SCCEEESSTTTCHHHHHHHHHHHHHHHHTTCC---CS-CEEECSSCCCHHHHHHHHHHHHHHSTTCCEEEESSHH-HHHH
T ss_pred eEEEEecCcccCccHHHHHHHHHHHHHHcCCC---CC-hheEEeCCCCHHHHHHHHHHHHhcCCCCCEEEECCHH-HHHH
Confidence 456665442 222334557888777775322 11 122334556677778888888864 478999975443 3333
Q ss_pred HHHhhccCC--cc----EEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHH
Q 008863 113 VAEIASRVQ--VP----ILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLAR 163 (550)
Q Consensus 113 v~~~~~~~~--iP----~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~ 163 (550)
+...+.+.+ +| ++++... +. .....|.+-.+..+...+++..+++|.
T Consensus 262 ~~~al~~~g~~vP~disvvg~D~~---~~-~~~~~p~lttv~~~~~~~g~~av~~l~ 314 (344)
T 3kjx_A 262 GLLYLLEQGIDIPGQIGLAGFNNV---EL-LQGLPRKLATMDACRLEIGRKAAEIIA 314 (344)
T ss_dssp HHHHHHHTTCCTTTTCEEECSBCC---GG-GGGSSSCCBEEBCCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCCceEEEEECCh---HH-HhccCCCccEEeCCHHHHHHHHHHHHH
Confidence 444444443 34 6665543 22 222234455667777778877777664
No 245
>1vlv_A Otcase, ornithine carbamoyltransferase; TM1097, structural genomics, protein structure initiative, PSI, joint center for structu genomics; 2.25A {Thermotoga maritima} SCOP: c.78.1.1 c.78.1.1
Probab=35.99 E-value=2.6e+02 Score=25.75 Aligned_cols=133 Identities=14% Similarity=0.123 Sum_probs=77.1
Q ss_pred EEEEEEEecCCccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEc-CCChHHHHHH
Q 008863 35 TKIGAIVDANSQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAG-METWEETAVV 113 (550)
Q Consensus 35 i~IG~i~~~~~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG-~~~s~~~~~v 113 (550)
-.|+.+|-..+ .+...+|+.|..++ ++..+.+...++.-.-.+.+....+.++.- +.+|+- .......
T Consensus 59 k~la~lF~epS---TRTR~SFE~A~~~L----Gg~~i~l~~~~ss~~kgEsl~DTarvLs~~-~D~iviR~~~~~~~--- 127 (325)
T 1vlv_A 59 MTLAMIFEKRS---TRTRLAFETAFAEE----GGHPIFLSPNDIHLGAKESLEDTARVLGRM-VDAIMFRGYKQETV--- 127 (325)
T ss_dssp CEEEEEESSCC---HHHHHHHHHHHHHT----TCEEEEECTTTCCTTTSSCHHHHHHHHHTT-CSEEEEESSCHHHH---
T ss_pred CEEEEEeccCC---cchHHHHHHHHHHc----CCeEEEECCccccCCCCcCHHHHHHHHHHh-CCEEEEECCChHHH---
Confidence 46788887663 68889999999998 455665543333322223344444444432 333332 2233333
Q ss_pred HHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHH---HHcC---CeEEEEEEEcCCCCCcchhHH
Q 008863 114 AEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLA---RKYN---WRRVAAIYEDNVYGGDSGKLA 187 (550)
Q Consensus 114 ~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l---~~~~---w~~v~ii~~~~~~g~~~~~~~ 187 (550)
..++...++|+|..+.. .. . -.++++|++ +++| -.+++++.+ .. ...+.
T Consensus 128 ~~lA~~~~vPVINa~~~--------~~-------H-----PtQaLaDl~Ti~e~~g~l~gl~va~vGD--~~---~rva~ 182 (325)
T 1vlv_A 128 EKLAEYSGVPVYNGLTD--------EF-------H-----PTQALADLMTIEENFGRLKGVKVVFMGD--TR---NNVAT 182 (325)
T ss_dssp HHHHHHHCSCEEESCCS--------SC-------C-----HHHHHHHHHHHHHHHSCSTTCEEEEESC--TT---SHHHH
T ss_pred HHHHHhCCCCEEeCCCC--------CC-------C-----cHHHHHHHHHHHHHhCCcCCcEEEEECC--CC---cCcHH
Confidence 33445557999993321 11 1 246777775 3444 357777765 22 34778
Q ss_pred HHHHHHhcCCCeEEEEE
Q 008863 188 LLAEALQNVSSSEIQSR 204 (550)
Q Consensus 188 ~l~~~l~~~g~~~v~~~ 204 (550)
.+...+...| .++...
T Consensus 183 Sl~~~~~~~G-~~v~~~ 198 (325)
T 1vlv_A 183 SLMIACAKMG-MNFVAC 198 (325)
T ss_dssp HHHHHHHHTT-CEEEEE
T ss_pred HHHHHHHHCC-CEEEEE
Confidence 8888888888 876553
No 246
>3g85_A Transcriptional regulator (LACI family); transcription regulator, PSI-II, structural genomics structure initiative; 1.84A {Clostridium acetobutylicum atcc 824}
Probab=35.90 E-value=2.3e+02 Score=25.00 Aligned_cols=122 Identities=12% Similarity=0.051 Sum_probs=68.1
Q ss_pred EEEEEEecC-CccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhc-CCeEEEEcCCChHHHHHH
Q 008863 36 KIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINK-EKVKVIAGMETWEETAVV 113 (550)
Q Consensus 36 ~IG~i~~~~-~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~-~~v~aiiG~~~s~~~~~v 113 (550)
+||++.... ......-..|++.++++.+-.. .... +.....+...+.+.+.+++.. +++.+|+.... ..+..+
T Consensus 129 ~i~~i~~~~~~~~~~~R~~gf~~~l~~~~~~~---~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d-~~a~g~ 203 (289)
T 3g85_A 129 SAAAILTESLNDAMDNRNKGFIETCHKNGIKI---SENH-IIAAENSIHGGVDAAKKLMKLKNTPKALFCNSD-SIALGV 203 (289)
T ss_dssp BCEEEECCCSSHHHHHHHHHHHHHHHHTTCBC---CGGG-EEECCSSHHHHHHHHHHHTTSSSCCSEEEESSH-HHHHHH
T ss_pred EEEEEeCCcccccHHHHHHHHHHHHHHcCCCC---Chhh-eeccCCCHHHHHHHHHHHHcCCCCCcEEEEcCC-HHHHHH
Confidence 577776543 2223445678888887753211 1111 123455677788888888864 46889997543 333344
Q ss_pred HHhhccCC--cc----EEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHH
Q 008863 114 AEIASRVQ--VP----ILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARK 164 (550)
Q Consensus 114 ~~~~~~~~--iP----~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~ 164 (550)
...+...+ +| ++++... +........|-+-.+..+...+++..+++|..
T Consensus 204 ~~al~~~g~~vP~di~vig~d~~--~~~~~~~~~p~lttv~~~~~~~g~~a~~~l~~ 258 (289)
T 3g85_A 204 ISVLNKRQISIPDDIEIVAIGMN--DREYTEFSTPPVTIVDIPIEEMAGTCISLVEK 258 (289)
T ss_dssp HHHHHHTTCCTTTTCEEEEEECS--CHHHHHSSSSCCEEEECCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCCCceEEEEeCCC--CcchhhccCCCCeEEcCCHHHHHHHHHHHHHH
Confidence 44444443 34 7776622 11122222244556677777888877777643
No 247
>2eqf_A Tumor necrosis factor, alpha-induced protein 3; ZF-A20 domain, putative DNA-binding protein A20, zinc finger protein A20, structural genomics; NMR {Homo sapiens}
Probab=35.80 E-value=10 Score=22.37 Aligned_cols=13 Identities=31% Similarity=0.616 Sum_probs=10.5
Q ss_pred CCcccccchHHHH
Q 008863 483 KNLRYDGFSIELF 495 (550)
Q Consensus 483 ~~~~~~GfciDll 495 (550)
||+++.|||-+-.
T Consensus 21 gN~kc~GyCNeC~ 33 (46)
T 2eqf_A 21 GNAKCNGYCNECF 33 (46)
T ss_dssp CBGGGTBSCHHHH
T ss_pred cchhhhhhhHHHH
Confidence 6999999997543
No 248
>4amu_A Ornithine carbamoyltransferase, catabolic; ornithine transcarbamoylase, hydrolase; 2.50A {Mycoplasma penetrans} PDB: 4anf_A
Probab=35.66 E-value=2.1e+02 Score=26.89 Aligned_cols=129 Identities=12% Similarity=0.099 Sum_probs=75.4
Q ss_pred EEEEEEEecCCccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCC---C-CHHHHHHHHHHhhhcCCeEEEEcCCChHHH
Q 008863 35 TKIGAIVDANSQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHN---R-DPFQAATAAQELINKEKVKVIAGMETWEET 110 (550)
Q Consensus 35 i~IG~i~~~~~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~---~-~~~~a~~~~~~li~~~~v~aiiG~~~s~~~ 110 (550)
-.|+.+|..++ .+...+|+.|+.++ ++..+.+...++. + .....++....+ . .+.++=++ ....
T Consensus 72 K~va~lF~e~S---TRTR~SFE~A~~~L----Gg~vi~l~~~~ss~~kgEsl~DTarvLs~~-~--D~IviR~~-~~~~- 139 (365)
T 4amu_A 72 KNIAILFQKDS---TRTRCAFEVAASDL----GAGVTYIGPSGSNMGKKESIEDTAKVLGRF-Y--DGIEFRGF-AQSD- 139 (365)
T ss_dssp CEEEEEESSCC---HHHHHHHHHHHHHH----TCEEEEECHHHHCCSSSSCHHHHHHHHHHH-C--SEEEEECS-CHHH-
T ss_pred ceEEEEecCCC---chHHHHHHHHHHhC----CCEEEEcCCccccCCCCcCHHHHHHHHHhh-C--cEEEEecC-ChhH-
Confidence 56888887764 68889999999999 4556654322322 2 223344443443 1 23333343 2233
Q ss_pred HHHHHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHH---HHcC---CeEEEEEEEcCCCCCcch
Q 008863 111 AVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLA---RKYN---WRRVAAIYEDNVYGGDSG 184 (550)
Q Consensus 111 ~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l---~~~~---w~~v~ii~~~~~~g~~~~ 184 (550)
+..++...++|+|..+.. .. . -.++++|++ +++| ..+|+++.+- . ..
T Consensus 140 --~~~lA~~s~vPVINa~~~--------~~-------H-----PtQaLaDl~Ti~E~~G~l~glkva~vGD~-~----nn 192 (365)
T 4amu_A 140 --VDALVKYSGVPVWNGLTD--------DE-------H-----PTQIIADFMTMKEKFGNLKNKKIVFIGDY-K----NN 192 (365)
T ss_dssp --HHHHHHHHCSCEEEEECS--------SC-------C-----HHHHHHHHHHHHHHHSSCTTCEEEEESST-T----SH
T ss_pred --HHHHHHhCCCCEEeCCCC--------CC-------C-----cHHHHHHHHHHHHHhCCCCCCEEEEECCC-C----cc
Confidence 344455568999986522 11 1 246777765 3454 4577766532 1 23
Q ss_pred hHHHHHHHHhcCCCeEEEE
Q 008863 185 KLALLAEALQNVSSSEIQS 203 (550)
Q Consensus 185 ~~~~l~~~l~~~g~~~v~~ 203 (550)
.+..+...+...| +.+..
T Consensus 193 va~Sl~~~~~~lG-~~v~~ 210 (365)
T 4amu_A 193 VGVSTMIGAAFNG-MHVVM 210 (365)
T ss_dssp HHHHHHHHHHHTT-CEEEE
T ss_pred hHHHHHHHHHHcC-CEEEE
Confidence 6788888888888 77654
No 249
>4ab5_A Transcriptional regulator, LYSR family; transcription factors; 2.51A {Neisseria meningitidis serogroup B} PDB: 4ab6_A
Probab=35.40 E-value=50 Score=27.74 Aligned_cols=47 Identities=6% Similarity=-0.038 Sum_probs=34.6
Q ss_pred cchHHHHHHHHHhCCCCCCeEEEecCCChHHHHHhhhcccccEEeeceee
Q 008863 489 GFSIELFRLVVDHLNYDLPYEFVPHDGVYDDLINGVYDKVNYFNYHDKLL 538 (550)
Q Consensus 489 GfciDll~~la~~l~f~~~~~~~~~~g~w~Gmi~el~~~~ad~a~~~~ti 538 (550)
.+-.+++.++.+... + +++....+..+.++..|.+|++|+|+.....
T Consensus 21 ~~l~~~l~~f~~~~P-~--i~i~i~~~~~~~~~~~l~~g~~Di~i~~~~~ 67 (222)
T 4ab5_A 21 DWLMPAMGEFRPMWP-Q--VELDIVSGFQADPVGLLLQHRADLAIVSEAE 67 (222)
T ss_dssp HHHHHHHHHHHHHST-T--EEEEEECCCCSCTHHHHHTTSCSEEEESCCC
T ss_pred HHHHHHHHHHHHHCC-C--cEEEEecCCHHHHHHHHHcCCcCEEEecCCC
Confidence 455677777776653 2 4455556778889999999999999986543
No 250
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=35.27 E-value=1.4e+02 Score=23.32 Aligned_cols=85 Identities=14% Similarity=0.073 Sum_probs=53.7
Q ss_pred EEEEEEEcCCCCCcchhHHHHHHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcCCCeEEEEEcCCH----HH
Q 008863 169 RVAAIYEDNVYGGDSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASL----DM 244 (550)
Q Consensus 169 ~v~ii~~~~~~g~~~~~~~~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~~ii~~~~~~----~~ 244 (550)
++.+-.-..+ .|.-....+...++..| +++..--.. ......++.+++.++++|.+ ++.. ..
T Consensus 5 ~vvla~~~~d--~HdiG~~~v~~~l~~~G-~~Vi~lG~~----------~p~e~~v~~a~~~~~d~v~l-S~~~~~~~~~ 70 (137)
T 1ccw_A 5 TIVLGVIGSD--CHAVGNKILDHAFTNAG-FNVVNIGVL----------SPQELFIKAAIETKADAILV-SSLYGQGEID 70 (137)
T ss_dssp EEEEEEETTC--CCCHHHHHHHHHHHHTT-CEEEEEEEE----------ECHHHHHHHHHHHTCSEEEE-EECSSTHHHH
T ss_pred EEEEEeCCCc--hhHHHHHHHHHHHHHCC-CEEEECCCC----------CCHHHHHHHHHhcCCCEEEE-EecCcCcHHH
Confidence 4555554444 34667788889999999 988754321 12344566666779999999 5432 23
Q ss_pred HHHHHHHHHHcCCCCCCEEEEEec
Q 008863 245 TIHLFTEANRMGLVGKDSVWIVTN 268 (550)
Q Consensus 245 ~~~il~~a~~~g~~~~~~~~i~~~ 268 (550)
...+++++++.|... -.+|++..
T Consensus 71 ~~~~i~~l~~~g~~~-i~v~vGG~ 93 (137)
T 1ccw_A 71 CKGLRQKCDEAGLEG-ILLYVGGN 93 (137)
T ss_dssp HTTHHHHHHHTTCTT-CEEEEEES
T ss_pred HHHHHHHHHhcCCCC-CEEEEECC
Confidence 456777888887642 33566543
No 251
>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix, transcrip; 1.90A {Lactococcus lactis}
Probab=34.96 E-value=1.8e+02 Score=26.60 Aligned_cols=117 Identities=15% Similarity=0.119 Sum_probs=66.6
Q ss_pred EEEEEEecC-CccchhHHHHHHHHHHHHhcCCCCcEEEE-EEecCCCCHHHHHHHHHHhhhcCCeEEEEcCCChHHHHHH
Q 008863 36 KIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSL-QIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEETAVV 113 (550)
Q Consensus 36 ~IG~i~~~~-~~~g~~~~~a~~~Av~~iN~~~~~~~l~~-~~~d~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~~~~~v 113 (550)
+||++.... ......-..|++.|+++.+- ++.. .+.....+...+.+.+.+++.. ++.||+.... ..+..+
T Consensus 182 ~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~-----~~~~~~~~~~~~~~~~~~~~~~~ll~~-~~~ai~~~~d-~~A~g~ 254 (332)
T 2o20_A 182 KIAYIMGSLKDVENTERMVGYQEALLEANI-----EFDENLVFEGNYSYEQGKALAERLLER-GATSAVVSHD-TVAVGL 254 (332)
T ss_dssp SEEEECSCTTSHHHHHHHHHHHHHHHHTTC-----CCCGGGEECSCCSHHHHHHHHHHHHHT-TCCEEEESCH-HHHHHH
T ss_pred eEEEEeCCcccccHHHHHHHHHHHHHHcCC-----CCChhhEEeCCCCHHHHHHHHHHHhcc-CCCEEEECCh-HHHHHH
Confidence 577776543 22234455788888877532 2211 1223345666777888888876 8899997543 334444
Q ss_pred HHhhccCC--cc----EEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHH
Q 008863 114 AEIASRVQ--VP----ILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLAR 163 (550)
Q Consensus 114 ~~~~~~~~--iP----~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~ 163 (550)
...+.+.+ +| ++++... +... ...|.+-.+..+...++...+++|.
T Consensus 255 ~~al~~~G~~vP~disvig~D~~---~~~~-~~~p~lttv~~~~~~~g~~a~~~l~ 306 (332)
T 2o20_A 255 LSAMMDKGVKVPEDFEIISGANS---PITQ-YTYPTLTSVNQPLYDLGAVAMRLLT 306 (332)
T ss_dssp HHHHHHTTCCTTTTCEEEESSCC---GGGG-SBSSCCEEEECCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCccCEEEEEeCCh---HHHh-hCCCceEEEeeCHHHHHHHHHHHHH
Confidence 44555444 34 6666544 2221 2224455666777777777777663
No 252
>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, struct genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli}
Probab=34.86 E-value=1.6e+02 Score=26.17 Aligned_cols=84 Identities=10% Similarity=0.058 Sum_probs=49.6
Q ss_pred HHHcCCeEEEEEEEc----CCCCCcchhHHHHHHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcCCCeEEEE
Q 008863 162 ARKYNWRRVAAIYED----NVYGGDSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIV 237 (550)
Q Consensus 162 l~~~~w~~v~ii~~~----~~~g~~~~~~~~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~~ii~ 237 (550)
|+.-+-.+++++..+ +.|. ....+.+.+.+++.| ..+.... ... +.......++.+.+.+.+.||+
T Consensus 14 L~~~~~~~Ig~i~~~~~~~~~~~--~~~~~gi~~~~~~~g-~~~~~~~---~~~----~~~~~~~~~~~l~~~~vdgii~ 83 (296)
T 3brq_A 14 LSAKSTQTLGLVVTNTLYHGIYF--SELLFHAARMAEEKG-RQLLLAD---GKH----SAEEERQAIQYLLDLRCDAIMI 83 (296)
T ss_dssp -----CCEEEEEECGGGCC--CH--HHHHHHHHHHHHHTT-CEEEEEC---CTT----SHHHHHHHHHHHHHTTCSEEEE
T ss_pred hhcCCCceEEEEeCCcccCCchH--HHHHHHHHHHHHHCC-CEEEEEe---CCC----CHHHHHHHHHHHHhcCCCEEEE
Confidence 433344689998875 2465 778888899999999 8765432 111 2234456677777778998888
Q ss_pred EcCCHHHHHHHHHHHHH-cCC
Q 008863 238 LQASLDMTIHLFTEANR-MGL 257 (550)
Q Consensus 238 ~~~~~~~~~~il~~a~~-~g~ 257 (550)
....... ..+..+.+ .++
T Consensus 84 ~~~~~~~--~~~~~l~~~~~i 102 (296)
T 3brq_A 84 YPRFLSV--DEIDDIIDAHSQ 102 (296)
T ss_dssp ECSSSCH--HHHHHHHHTCSS
T ss_pred ecCCCCh--HHHHHHHhcCCC
Confidence 2332222 34556666 554
No 253
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=34.60 E-value=1.8e+02 Score=23.47 Aligned_cols=87 Identities=14% Similarity=0.054 Sum_probs=56.5
Q ss_pred eEEEEEEEcCCCCCcchhHHHHHHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcCCCeEEEEEcCC----HH
Q 008863 168 RRVAAIYEDNVYGGDSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQAS----LD 243 (550)
Q Consensus 168 ~~v~ii~~~~~~g~~~~~~~~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~~ii~~~~~----~~ 243 (550)
.+|.+..-..+ .|.-....+...++..| +++..-- .. ......++.+++.++++|.+ ++. ..
T Consensus 19 ~~vlla~~~gd--~HdiG~~~va~~l~~~G-~eVi~lG---~~-------~p~e~lv~aa~~~~~diV~l-S~~~~~~~~ 84 (161)
T 2yxb_A 19 YKVLVAKMGLD--GHDRGAKVVARALRDAG-FEVVYTG---LR-------QTPEQVAMAAVQEDVDVIGV-SILNGAHLH 84 (161)
T ss_dssp CEEEEEEESSS--SCCHHHHHHHHHHHHTT-CEEECCC---SB-------CCHHHHHHHHHHTTCSEEEE-EESSSCHHH
T ss_pred CEEEEEeCCCC--ccHHHHHHHHHHHHHCC-CEEEECC---CC-------CCHHHHHHHHHhcCCCEEEE-EeechhhHH
Confidence 45555555554 34667888889999999 8875422 11 23345677777889999999 543 24
Q ss_pred HHHHHHHHHHHcCCCCCCEEEEEecc
Q 008863 244 MTIHLFTEANRMGLVGKDSVWIVTNT 269 (550)
Q Consensus 244 ~~~~il~~a~~~g~~~~~~~~i~~~~ 269 (550)
.+..+++++++.|... -.+|++...
T Consensus 85 ~~~~~i~~L~~~g~~~-i~v~vGG~~ 109 (161)
T 2yxb_A 85 LMKRLMAKLRELGADD-IPVVLGGTI 109 (161)
T ss_dssp HHHHHHHHHHHTTCTT-SCEEEEECC
T ss_pred HHHHHHHHHHhcCCCC-CEEEEeCCC
Confidence 5677788888887632 236666543
No 254
>2jfq_A Glutamate racemase; cell WALL, isomerase, cell shape, peptidoglycan synthesis, peptidoglycan biosynthesis; HET: DGL; 2.15A {Staphylococcus aureus}
Probab=34.50 E-value=95 Score=28.13 Aligned_cols=35 Identities=3% Similarity=0.118 Sum_probs=22.7
Q ss_pred hhcCCeEEEEcCCChHHHHHHHHhhccCCccEEec
Q 008863 93 INKEKVKVIAGMETWEETAVVAEIASRVQVPILSF 127 (550)
Q Consensus 93 i~~~~v~aiiG~~~s~~~~~v~~~~~~~~iP~is~ 127 (550)
+.+.++.+|+-+-++..+..+..+-+..++|+|..
T Consensus 80 L~~~g~d~IVIaCNTas~~~l~~lr~~~~iPVigi 114 (286)
T 2jfq_A 80 LMEFDIKMLVIACNTATAVALEYLQKTLSISVIGV 114 (286)
T ss_dssp HTTSCCSEEEECCHHHHHHHHHHHHHHCSSEEEES
T ss_pred HHHCCCCEEEEeCCchhHHHHHHHHHhCCCCEEec
Confidence 33468888886544444334556666778999883
No 255
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=34.50 E-value=1.6e+02 Score=26.16 Aligned_cols=120 Identities=12% Similarity=0.040 Sum_probs=68.6
Q ss_pred EEEEEEEecC-CccchhHHHHHHHHHHHHhcCCCCcEEEEE-EecCCCCHHHHHHHHHHhhhc-CCeEEEEcCCChHHHH
Q 008863 35 TKIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQ-IRDHNRDPFQAATAAQELINK-EKVKVIAGMETWEETA 111 (550)
Q Consensus 35 i~IG~i~~~~-~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~-~~d~~~~~~~a~~~~~~li~~-~~v~aiiG~~~s~~~~ 111 (550)
-+||++.... ......-..|++.++++. |.++... +.....+...+.+.+.+++.. ..+.||+..... .+.
T Consensus 128 ~~I~~i~~~~~~~~~~~R~~gf~~~l~~~-----g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~-~A~ 201 (288)
T 3gv0_A 128 KRIAVIVPPSRFSFHDHARKGFNRGIRDF-----GLTEFPIDAVTIETPLEKIRDFGQRLMQSSDRPDGIVSISGS-STI 201 (288)
T ss_dssp CEEEEECCCTTSHHHHHHHHHHHHHHHHT-----TCEECCCCSCCTTSCHHHHHHHHHHHTTSSSCCSEEEESCHH-HHH
T ss_pred CeEEEEcCCcccchHHHHHHHHHHHHHHc-----CCCcchhheeccccchHHHHHHHHHHHhCCCCCcEEEEcCcH-HHH
Confidence 4677776543 222344557787777764 3333322 234456677777888888864 468899975443 344
Q ss_pred HHHHhhccCC------ccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHH
Q 008863 112 VVAEIASRVQ------VPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARK 164 (550)
Q Consensus 112 ~v~~~~~~~~------iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~ 164 (550)
.+...+...+ +.++++... +... ...|.+-.+..+...+++..+++|..
T Consensus 202 g~~~al~~~g~~vP~di~vig~d~~---~~~~-~~~p~lttv~~~~~~~g~~a~~~l~~ 256 (288)
T 3gv0_A 202 ALVAGFEAAGVKIGEDVDIVSKQSA---EFLN-WIKPQIHTVNEDIKLAGRELAKALLA 256 (288)
T ss_dssp HHHHHHHTTTCCTTTSCEEEEEESS---TTHH-HHCTTSEEEECCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCceEEEEecCh---HHHh-ccCCCceEEecCHHHHHHHHHHHHHH
Confidence 4445555544 336666654 2211 11233445667777777777777643
No 256
>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, SUG binding protein, structural genomics, PSI-2; 2.05A {Burkholderia phymatum}
Probab=34.41 E-value=1.6e+02 Score=26.27 Aligned_cols=119 Identities=8% Similarity=0.037 Sum_probs=65.7
Q ss_pred EEEEEEecC-CccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhc-CCeEEEEcCCChHHHHHH
Q 008863 36 KIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINK-EKVKVIAGMETWEETAVV 113 (550)
Q Consensus 36 ~IG~i~~~~-~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~-~~v~aiiG~~~s~~~~~v 113 (550)
+||++.... ......-..|++.|+++.+-. ..... +.....+...+.+.+.+++.. ..+.+|+..... .+..+
T Consensus 130 ~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~---~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~-~A~g~ 204 (290)
T 2rgy_A 130 KLAVISGPFTASDNVERLDGFFDELARHGIA---RDSVP-LIESDFSPEGGYAATCQLLESKAPFTGLFCANDT-MAVSA 204 (290)
T ss_dssp SEEEEESCTTCHHHHHHHHHHHHHHHTTTCC---GGGSC-EEECCSSHHHHHHHHHHHHHHTCCCSEEEESSHH-HHHHH
T ss_pred eEEEEeCCCCCccHHHHHHHHHHHHHHcCCC---CCccc-EEecCCChhHHHHHHHHHHhCCCCCcEEEECCcH-HHHHH
Confidence 677777543 222344567888787764311 11111 122345666777778888764 468899975443 33334
Q ss_pred HHhhccCC--cc----EEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHH
Q 008863 114 AEIASRVQ--VP----ILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLAR 163 (550)
Q Consensus 114 ~~~~~~~~--iP----~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~ 163 (550)
...+.+.+ +| ++++... +... ...|.+..+..+...++...+++|.
T Consensus 205 ~~al~~~G~~vP~di~vvg~D~~---~~~~-~~~p~lttv~~~~~~~g~~a~~~l~ 256 (290)
T 2rgy_A 205 LARFQQLGISVPGDVSVIGYDDD---YSAA-YAAPALTSVHIPTAELTQNAVRWLI 256 (290)
T ss_dssp HHHHHHTTCCTTTTCEEEEEECC---TTST-TSSSCCEEEECCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCCCceEEEEeCCc---hHhc-ccCCCceEEeCCHHHHHHHHHHHHH
Confidence 44444433 33 7777655 2221 1224455666777777777777663
No 257
>1byk_A Protein (trehalose operon repressor); LACI family, phosphate binding, protein structure, trehalose repressor, gene regulation; HET: T6P; 2.50A {Escherichia coli} SCOP: c.93.1.1
Probab=34.16 E-value=1.4e+02 Score=25.86 Aligned_cols=115 Identities=10% Similarity=-0.001 Sum_probs=65.6
Q ss_pred EEEEEEec--CCccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEcCCChHHHHHH
Q 008863 36 KIGAIVDA--NSQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEETAVV 113 (550)
Q Consensus 36 ~IG~i~~~--~~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~~~~~v 113 (550)
+||.+... .......-..|++.|+++.+ .++.. .....+...+.+.+.+++. .++.||+..... .+..+
T Consensus 117 ~I~~i~~~~~~~~~~~~R~~gf~~al~~~g-----~~~~~--~~~~~~~~~~~~~~~~~l~-~~~~ai~~~~d~-~A~g~ 187 (255)
T 1byk_A 117 NISYLGVPHSDVTTGKRRHEAYLAFCKAHK-----LHPVA--ALPGLAMKQGYENVAKVIT-PETTALLCATDT-LALGA 187 (255)
T ss_dssp CEEEECCCTTSTTTTHHHHHHHHHHHHHTT-----CCCEE--ECCCSCHHHHHHHSGGGCC-TTCCEEEESSHH-HHHHH
T ss_pred eEEEEecCCCCcccHHHHHHHHHHHHHHcC-----CCcce--eecCCccchHHHHHHHHhc-CCCCEEEEeChH-HHHHH
Confidence 57777643 22334456688888887742 22222 2334566667777788886 578999975443 33334
Q ss_pred HHhhccC---CccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHH
Q 008863 114 AEIASRV---QVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLAR 163 (550)
Q Consensus 114 ~~~~~~~---~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~ 163 (550)
...+.+. ++.++++... +.... ..|.+-.+..+...++...+++|.
T Consensus 188 ~~al~~~g~~di~vig~d~~---~~~~~-~~p~lttv~~~~~~~g~~a~~~l~ 236 (255)
T 1byk_A 188 SKYLQEQRIDTLQLASVGNT---PLMKF-LHPEIVTVDPGYAEAGRQAACQLI 236 (255)
T ss_dssp HHHHHHTTCCSCEEEEECCC---HHHHH-HCTTSEEEBCCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCcEEEEEeCCc---hhhhc-cCCCcceEecCHHHHHHHHHHHHH
Confidence 4444443 5677777654 22111 123344566666777777777653
No 258
>2x7x_A Sensor protein; transferase, sensor histidine kinase; HET: FRU; 2.64A {Bacteroides thetaiotaomicron}
Probab=34.08 E-value=1.5e+02 Score=26.93 Aligned_cols=81 Identities=9% Similarity=0.053 Sum_probs=49.7
Q ss_pred CeEEEEEEEcC-CCCCcchhHHHHHHHHhcC-CCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcCCCeEEEEEcCCHHH
Q 008863 167 WRRVAAIYEDN-VYGGDSGKLALLAEALQNV-SSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDM 244 (550)
Q Consensus 167 w~~v~ii~~~~-~~g~~~~~~~~l~~~l~~~-g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~~ii~~~~~~~~ 244 (550)
-.+|+++..+. .|. ....+.+.+.+.+. | ..+..... .. +.......++.+.+.+.+.||+.......
T Consensus 6 ~~~Igvi~~~~~~~~--~~~~~gi~~~a~~~~g-~~l~i~~~--~~-----~~~~~~~~i~~l~~~~vdgiIi~~~~~~~ 75 (325)
T 2x7x_A 6 HFRIGVAQCSDDSWR--HKMNDEILREAMFYNG-VSVEIRSA--GD-----DNSKQAEDVHYFMDEGVDLLIISANEAAP 75 (325)
T ss_dssp CCEEEEEESCCSHHH--HHHHHHHHHHHTTSSS-CEEEEEEC--TT-----CHHHHHHHHHHHHHTTCSEEEECCSSHHH
T ss_pred CeEEEEEecCCCHHH--HHHHHHHHHHHHHcCC-cEEEEeCC--CC-----CHHHHHHHHHHHHHcCCCEEEEeCCCHHH
Confidence 35788887652 233 45667778888888 8 77654321 11 22344566777777789988882333333
Q ss_pred HHHHHHHHHHcCC
Q 008863 245 TIHLFTEANRMGL 257 (550)
Q Consensus 245 ~~~il~~a~~~g~ 257 (550)
....++.+.+.|+
T Consensus 76 ~~~~~~~~~~~~i 88 (325)
T 2x7x_A 76 MTPIVEEAYQKGI 88 (325)
T ss_dssp HHHHHHHHHHTTC
T ss_pred HHHHHHHHHHCCC
Confidence 4456777777665
No 259
>1jx6_A LUXP protein; protein-ligand complex, signaling protein; HET: AI2; 1.50A {Vibrio harveyi} SCOP: c.93.1.1 PDB: 1zhh_A* 2hj9_A*
Probab=34.07 E-value=1e+02 Score=28.38 Aligned_cols=83 Identities=11% Similarity=0.079 Sum_probs=48.8
Q ss_pred eEEEEEEEc---CCCCCcchhHHHHHHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcCCCeEEEEEcCCHHH
Q 008863 168 RRVAAIYED---NVYGGDSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDM 244 (550)
Q Consensus 168 ~~v~ii~~~---~~~g~~~~~~~~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~~ii~~~~~~~~ 244 (550)
.+++++..+ +.|. ....+.+.+.+.+.| ..+.......... .+.......++.+.+.+.+.||+ ......
T Consensus 44 ~~Igvi~~~~~~~~~~--~~~~~gi~~~a~~~g-~~~~~~~~~~~~~---~~~~~~~~~i~~l~~~~vdgiIi-~~~~~~ 116 (342)
T 1jx6_A 44 IKISVVYPGQQVSDYW--VRNIASFEKRLYKLN-INYQLNQVFTRPN---ADIKQQSLSLMEALKSKSDYLIF-TLDTTR 116 (342)
T ss_dssp EEEEEEECCCSSCCHH--HHHHHHHHHHHHHTT-CCEEEEEEECCTT---CCHHHHHHHHHHHHHTTCSEEEE-CCSSST
T ss_pred eEEEEEecCCcccHHH--HHHHHHHHHHHHHcC-CeEEEEecCCCCc---cCHHHHHHHHHHHHhcCCCEEEE-eCChHh
Confidence 467787765 3454 667778888888888 7655432111100 02233445677777778888888 655443
Q ss_pred HHHHHHHHHHcCC
Q 008863 245 TIHLFTEANRMGL 257 (550)
Q Consensus 245 ~~~il~~a~~~g~ 257 (550)
....++.+.+.|+
T Consensus 117 ~~~~~~~~~~~~i 129 (342)
T 1jx6_A 117 HRKFVEHVLDSTN 129 (342)
T ss_dssp THHHHHHHHHHCS
T ss_pred HHHHHHHHHHcCC
Confidence 3345566666554
No 260
>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G*
Probab=33.99 E-value=1.6e+02 Score=26.16 Aligned_cols=118 Identities=14% Similarity=0.090 Sum_probs=66.0
Q ss_pred EEEEEEecC-C-ccchhHHHHHHHHHHHHhcCCCCcEEEE-EEecCCCCHHHHHHHHHHhhhc-CCeEEEEcCCChHHHH
Q 008863 36 KIGAIVDAN-S-QMGKQAITAMKIAVQNFNSDSRNHKLSL-QIRDHNRDPFQAATAAQELINK-EKVKVIAGMETWEETA 111 (550)
Q Consensus 36 ~IG~i~~~~-~-~~g~~~~~a~~~Av~~iN~~~~~~~l~~-~~~d~~~~~~~a~~~~~~li~~-~~v~aiiG~~~s~~~~ 111 (550)
+||++.... . .....-..|++.++++.+- ++.. .+.....+...+.+.+.+++.. ..+.+|+..... .+.
T Consensus 135 ~I~~i~~~~~~~~~~~~R~~Gf~~al~~~g~-----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~-~A~ 208 (289)
T 2fep_A 135 DIAFVSGPMAEPINRSKKLQGYKRALEEANL-----PFNEQFVAEGDYTYDSGLEALQHLMSLDKKPTAILSATDE-MAL 208 (289)
T ss_dssp SEEEEESCTTSHHHHTTHHHHHHHHHHHTTC-----CCCGGGEEECCSCHHHHHHHHHHHTTSSSCCSEEEESSHH-HHH
T ss_pred eEEEEeCCccccccHHHHHHHHHHHHHHcCC-----CCChheEeeCCCCHHHHHHHHHHHHcCCCCCCEEEECCHH-HHH
Confidence 577776543 1 2233456788888877532 2110 0123345667777888888864 468899975443 333
Q ss_pred HHHHhhccCC------ccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHH
Q 008863 112 VVAEIASRVQ------VPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLAR 163 (550)
Q Consensus 112 ~v~~~~~~~~------iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~ 163 (550)
.+...+.+.+ +.++++... +... ...|.+..+..+...++...+++|.
T Consensus 209 g~~~al~~~G~~vP~di~vvg~D~~---~~~~-~~~p~lttv~~~~~~~g~~a~~~l~ 262 (289)
T 2fep_A 209 GIIHAAQDQGLSIPEDLDIIGFDNT---RLSL-MVRPQLSTVVQPTYDIGAVAMRLLT 262 (289)
T ss_dssp HHHHHHHHTTCCTTTTCEEEEEECC---GGGT-SSSSCCEEEECCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCCeEEEEECCh---HHHh-hcCCceeEEeCCHHHHHHHHHHHHH
Confidence 4444444443 346776654 2221 2234455666777777777777663
No 261
>1zuw_A Glutamate racemase 1; (R)-glutamate, peptidoglycan biosynthesi isomerase; HET: DGL; 1.75A {Bacillus subtilis}
Probab=33.98 E-value=1.3e+02 Score=26.98 Aligned_cols=32 Identities=13% Similarity=0.278 Sum_probs=21.5
Q ss_pred CCeEEEEcCCChHHHHHHHHhhccCCccEEec
Q 008863 96 EKVKVIAGMETWEETAVVAEIASRVQVPILSF 127 (550)
Q Consensus 96 ~~v~aiiG~~~s~~~~~v~~~~~~~~iP~is~ 127 (550)
.++.+|+-+-++.++..+..+-+..++|+|..
T Consensus 65 ~g~d~iViACNTas~~~l~~lr~~~~iPVigi 96 (272)
T 1zuw_A 65 HHIKMLVIACNTATAIALDDIQRSVGIPVVGV 96 (272)
T ss_dssp SCCSEEEECCHHHHHHHHHHHHHHCSSCEEES
T ss_pred cCCCEEEEeCchhhHHHHHHHHHHCCCCEEcc
Confidence 68888886544444335666667788999873
No 262
>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}
Probab=33.96 E-value=80 Score=28.55 Aligned_cols=87 Identities=13% Similarity=0.109 Sum_probs=50.7
Q ss_pred HHHHHHcCCeEEEEEEEcC--CCCCcchhHHHHHHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcCCCeEEE
Q 008863 159 ADLARKYNWRRVAAIYEDN--VYGGDSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFI 236 (550)
Q Consensus 159 ~~~l~~~~w~~v~ii~~~~--~~g~~~~~~~~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~~ii 236 (550)
+.-|+..+-+.|+++..+. .|. ..+.+.+.+.+.+.| ..+..... .. +.......++.+.+.+.|.||
T Consensus 7 Ar~L~~~~s~~Igvi~~~~~~~~~--~~~~~gi~~~a~~~g-~~~~~~~~-~~------~~~~~~~~~~~l~~~~vdgiI 76 (303)
T 3kke_A 7 ARALRHSRSGTIGLIVPDVNNAVF--ADMFSGVQMAASGHS-TDVLLGQI-DA------PPRGTQQLSRLVSEGRVDGVL 76 (303)
T ss_dssp ----------CEEEEESCTTSTTH--HHHHHHHHHHHHHTT-CCEEEEEC-CS------TTHHHHHHHHHHHSCSSSEEE
T ss_pred HHHHhhCCCCEEEEEeCCCcChHH--HHHHHHHHHHHHHCC-CEEEEEeC-CC------ChHHHHHHHHHHHhCCCcEEE
Confidence 3344444456788888754 455 778888999999999 87764331 11 224456678888888999999
Q ss_pred EEcCCHHHHHHHHHHHHHcCC
Q 008863 237 VLQASLDMTIHLFTEANRMGL 257 (550)
Q Consensus 237 ~~~~~~~~~~~il~~a~~~g~ 257 (550)
+ ..........+..+.+ |+
T Consensus 77 ~-~~~~~~~~~~~~~l~~-~i 95 (303)
T 3kke_A 77 L-QRREDFDDDMLAAVLE-GV 95 (303)
T ss_dssp E-CCCTTCCHHHHHHHHT-TS
T ss_pred E-ecCCCCcHHHHHHHhC-CC
Confidence 8 5433222115666666 65
No 263
>2lnd_A De novo designed protein, PFK fold; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=33.92 E-value=1.2e+02 Score=20.98 Aligned_cols=42 Identities=24% Similarity=0.327 Sum_probs=31.1
Q ss_pred ChHHHHHHHHHhhcC-CCeEEEEEcCCHHHHHHHHHHHHHcCC
Q 008863 216 PKEAVRGELKKVQDK-QSRVFIVLQASLDMTIHLFTEANRMGL 257 (550)
Q Consensus 216 ~~~d~~~~l~~i~~~-~~~~ii~~~~~~~~~~~il~~a~~~g~ 257 (550)
...|++.+++.+++. .+-++++...+..+...|-.+|+..|.
T Consensus 36 ssqdirdiiksmkdngkplvvfvngasqndvnefqneakkegv 78 (112)
T 2lnd_A 36 SSQDIRDIIKSMKDNGKPLVVFVNGASQNDVNEFQNEAKKEGV 78 (112)
T ss_dssp SHHHHHHHHHHHTTCCSCEEEEECSCCHHHHHHHHHHHHHHTC
T ss_pred chhhHHHHHHHHHhcCCeEEEEecCcccccHHHHHHHHHhcCc
Confidence 457899999999987 555666644566677788888888775
No 264
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=33.73 E-value=69 Score=28.63 Aligned_cols=80 Identities=11% Similarity=0.065 Sum_probs=52.1
Q ss_pred CCeEEEEEEEc-------CCCCCcchhHHHHHHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcCCCeEEEEE
Q 008863 166 NWRRVAAIYED-------NVYGGDSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVL 238 (550)
Q Consensus 166 ~w~~v~ii~~~-------~~~g~~~~~~~~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~~ii~~ 238 (550)
+-++|+++..+ +.|. ..+.+.+.+.+.+.| ..+... .... +.......++.+.+.+.+.||+
T Consensus 7 ~~~~Igvi~~~~~~~~~~~~~~--~~~~~gi~~~a~~~g-~~~~~~---~~~~----~~~~~~~~~~~~~~~~vdgiIi- 75 (292)
T 3k4h_A 7 TTKTLGLVMPSSASKAFQNPFF--PEVIRGISSFAHVEG-YALYMS---TGET----EEEIFNGVVKMVQGRQIGGIIL- 75 (292)
T ss_dssp CCCEEEEECSSCHHHHTTSTHH--HHHHHHHHHHHHHTT-CEEEEC---CCCS----HHHHHHHHHHHHHTTCCCEEEE-
T ss_pred CCCEEEEEecCCccccccCHHH--HHHHHHHHHHHHHcC-CEEEEE---eCCC----CHHHHHHHHHHHHcCCCCEEEE-
Confidence 44678888876 3455 677888889999999 776542 2111 2233456677787889999998
Q ss_pred cCCHHHHHHHHHHHHHcCC
Q 008863 239 QASLDMTIHLFTEANRMGL 257 (550)
Q Consensus 239 ~~~~~~~~~il~~a~~~g~ 257 (550)
...... ...++.+.+.|+
T Consensus 76 ~~~~~~-~~~~~~l~~~~i 93 (292)
T 3k4h_A 76 LYSREN-DRIIQYLHEQNF 93 (292)
T ss_dssp SCCBTT-CHHHHHHHHTTC
T ss_pred eCCCCC-hHHHHHHHHCCC
Confidence 543322 256677777775
No 265
>3lkv_A Uncharacterized conserved domain protein; ATPase binding cassette, PSI, MCSG, structural genomics, Pro structure initiative; HET: PHE; 2.20A {Vibrio cholerae}
Probab=33.55 E-value=1.6e+02 Score=26.66 Aligned_cols=114 Identities=16% Similarity=0.149 Sum_probs=61.3
Q ss_pred cEEEEEEEecCCccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEcCCChHHH---
Q 008863 34 VTKIGAIVDANSQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEET--- 110 (550)
Q Consensus 34 ~i~IG~i~~~~~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~~~--- 110 (550)
.-+||++...+..........++.+.+. .|+++......+..+. .+.+..+ . .++.+++.+......
T Consensus 140 ~k~vgvi~~~~~~~s~~~~~~~~~~~~~-----~g~~~v~~~~~~~~~~---~~~~~~l-~-~~~d~i~~~~d~~~~~~~ 209 (302)
T 3lkv_A 140 VKSIGVVYNPGEANAVSLMELLKLSAAK-----HGIKLVEATALKSADV---QSATQAI-A-EKSDVIYALIDNTVASAI 209 (302)
T ss_dssp CCEEEEEECTTCHHHHHHHHHHHHHHHH-----TTCEEEEEECSSGGGH---HHHHHHH-H-TTCSEEEECSCHHHHHTH
T ss_pred CCEEEEEeCCCcccHHHHHHHHHHHHHH-----cCCEEEEEecCChHHH---HHHHHhc-c-CCeeEEEEeCCcchhhHH
Confidence 3468888766532222333344444333 2555544333332322 2333333 3 477888877665433
Q ss_pred HHHHHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHH
Q 008863 111 AVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARK 164 (550)
Q Consensus 111 ~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~ 164 (550)
..+...+...++|+++.... ..... -+.....+...+++..++++.+
T Consensus 210 ~~i~~~~~~~~iPv~~~~~~----~v~~G---~l~~~~~~~~~~G~~aa~~a~~ 256 (302)
T 3lkv_A 210 EGMIVAANQAKTPVFGAATS----YVERG---AIASLGFDYYQIGVQTADYVAA 256 (302)
T ss_dssp HHHHHHHHHTTCCEEESSHH----HHHTT---CSEEEECCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCCceeecccc----cccCC---ceEEEecCHHHHHHHHHHHHHH
Confidence 34566788899999985432 12221 2445566777777777666533
No 266
>2is8_A Molybdopterin biosynthesis enzyme, MOAB; globular alpha/beta fold, structu genomics, NPPSFA; 1.64A {Thermus thermophilus} PDB: 3mch_A
Probab=33.51 E-value=1.5e+02 Score=23.99 Aligned_cols=49 Identities=12% Similarity=0.177 Sum_probs=36.3
Q ss_pred hhHHHHHHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcC-CCeEEEEEcC
Q 008863 184 GKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDK-QSRVFIVLQA 240 (550)
Q Consensus 184 ~~~~~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~-~~~~ii~~~~ 240 (550)
.....+.+.+.+.| ..+.....++. +.+.+...+++..+. ++|+||. .+
T Consensus 21 ~n~~~l~~~l~~~G-~~v~~~~iv~D------d~~~i~~~l~~~~~~~~~DlVit-tG 70 (164)
T 2is8_A 21 TTHLAIREVLAGGP-FEVAAYELVPD------EPPMIKKVLRLWADREGLDLILT-NG 70 (164)
T ss_dssp CHHHHHHHHHTTSS-EEEEEEEEECS------CHHHHHHHHHHHHHTSCCSEEEE-ES
T ss_pred chHHHHHHHHHHCC-CeEeEEEEcCC------CHHHHHHHHHHHHhcCCCCEEEE-cC
Confidence 34577888999999 88877766654 346777888877664 7899998 43
No 267
>1gud_A ALBP, D-allose-binding periplasmic protein; periplasmic binding protein, X-RAY crystallography, hinge bending, conformational change; 1.7A {Escherichia coli} SCOP: c.93.1.1 PDB: 1gub_A 1rpj_A*
Probab=33.49 E-value=2e+02 Score=25.53 Aligned_cols=120 Identities=13% Similarity=0.098 Sum_probs=67.4
Q ss_pred cEEEEEEEecCC-ccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhc-CCeEEEEcCCChHHHH
Q 008863 34 VTKIGAIVDANS-QMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINK-EKVKVIAGMETWEETA 111 (550)
Q Consensus 34 ~i~IG~i~~~~~-~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~-~~v~aiiG~~~s~~~~ 111 (550)
.-+|+++..... .....-..|++-|+++. +|.++... .....+...+.+.+.+++.. ..+.||+.... ..+.
T Consensus 133 ~~~I~~i~g~~~~~~~~~R~~Gf~~al~~~----~g~~~~~~-~~~~~~~~~~~~~~~~ll~~~~~~~ai~~~nD-~~A~ 206 (288)
T 1gud_A 133 GGEVAIIEGKAGNASGEARRNGATEAFKKA----SQIKLVAS-QPADWDRIKALDVATNVLQRNPNIKAIYCAND-TMAM 206 (288)
T ss_dssp CEEEEEEECSTTCHHHHHHHHHHHHHHHTC----TTEEEEEE-EECTTCHHHHHHHHHHHHHHCTTCCEEEESSH-HHHH
T ss_pred CCEEEEEeCCCCCchHhHHHHHHHHHHHhC----CCcEEEEe-ecCCccHHHHHHHHHHHHHhCCCceEEEECCC-chHH
Confidence 357888875432 22234457888888752 35555432 33445667777888888864 46889997544 3444
Q ss_pred HHHHhhccCCcc----EEeccCCCCCCcc-cC-CCCCeEEEEecCcHHhHHHHHHHH
Q 008863 112 VVAEIASRVQVP----ILSFAAPAVTPLS-MS-RRWPYLIRMASNDSEQMKCIADLA 162 (550)
Q Consensus 112 ~v~~~~~~~~iP----~is~~~~~~~~~~-~~-~~~~~~~~~~p~~~~~~~al~~~l 162 (550)
.+...+.+.++| ++++... +.. .. ...+.+..+..+...+++..++++
T Consensus 207 g~~~al~~~G~~~dv~vvGfD~~---~~~~~~~~~p~~lttv~q~~~~~g~~a~~~l 260 (288)
T 1gud_A 207 GVAQAVANAGKTGKVLVVGTDGI---PEARKMVEAGQMTATVAQNPADIGATGLKLM 260 (288)
T ss_dssp HHHHHHHHTTCTTTSEEEEESCC---HHHHHHHHHTSSCEEEECCHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCeEEEEeCCC---HHHHHHHHcCccEEEEEcCHHHHHHHHHHHH
Confidence 445555555554 6665544 211 11 111223455566666776666655
No 268
>3clk_A Transcription regulator; 11017J, PSI-II, NYSGXRC, dimer, structural genomics, protein structure initiative; 2.08A {Lactobacillus plantarum WCFS1}
Probab=33.45 E-value=1.5e+02 Score=26.38 Aligned_cols=119 Identities=14% Similarity=0.125 Sum_probs=66.7
Q ss_pred EEEEEEecC-CccchhHHHHHHHHHHHHhcCCCCcEEEE-EEecCCCCHHHHHHHHHHhhhcCCeEEEEcCCChHHHHHH
Q 008863 36 KIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSL-QIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEETAVV 113 (550)
Q Consensus 36 ~IG~i~~~~-~~~g~~~~~a~~~Av~~iN~~~~~~~l~~-~~~d~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~~~~~v 113 (550)
+|+++.... ......-..|++.++++.+ .++.. .+.....+...+.+.+.+++...++.+|+..... .+..+
T Consensus 127 ~i~~i~~~~~~~~~~~R~~gf~~~l~~~g-----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ai~~~~d~-~a~g~ 200 (290)
T 3clk_A 127 QIGIAGIDQYPYTGRKRLAGYKKALKEAN-----IAINQEWIKPGDYSYTSGEQAMKAFGKNTDLTGIIAASDM-TAIGI 200 (290)
T ss_dssp SEEEESCCCCTTTHHHHHHHHHHHHHHTT-----CCCCGGGEECCCSSHHHHHHHHHHHCTTCCCSEEEESSHH-HHHHH
T ss_pred EEEEEeCCCCCcchHHHHHHHHHHHHHcC-----CCCCcceEEcCCCChhhHHHHHHHHhccCCCcEEEECCcH-HHHHH
Confidence 577776543 2334455688888887753 22210 1223344666677777888753578899975443 33334
Q ss_pred HHhhccCC--cc----EEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHH
Q 008863 114 AEIASRVQ--VP----ILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARK 164 (550)
Q Consensus 114 ~~~~~~~~--iP----~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~ 164 (550)
...+.+.+ +| ++++... +.... ..|.+-.+..+...++...+++|..
T Consensus 201 ~~al~~~g~~vP~di~vvg~d~~---~~~~~-~~p~lttv~~~~~~~g~~av~~l~~ 253 (290)
T 3clk_A 201 LNQASSFGIEVPKDLSIVSIDGT---EMCKI-TRPQLTSISQDFFQMGVTGVQQIHQ 253 (290)
T ss_dssp HHHHHHTTCCTTTTCEEEEEECC---THHHH-SSSCCEEEECCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCCCceEEEEeCCh---HHHhh-cCCCceEEecCHHHHHHHHHHHHHH
Confidence 44444433 34 7777655 22111 1244456667777788777777643
No 269
>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica}
Probab=33.35 E-value=2.2e+02 Score=24.11 Aligned_cols=88 Identities=10% Similarity=-0.081 Sum_probs=56.0
Q ss_pred eEEEEEEEcCCCCCcchhHHHHHHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcCCCeEEEEEcCC----HH
Q 008863 168 RRVAAIYEDNVYGGDSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQAS----LD 243 (550)
Q Consensus 168 ~~v~ii~~~~~~g~~~~~~~~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~~ii~~~~~----~~ 243 (550)
.+|.+.....+ .|.-....+...++..| +++..- ... ......+..+++.++++|.+ .+. ..
T Consensus 89 ~~vll~~~~gd--~H~iG~~~va~~l~~~G-~~v~~L---G~~-------vp~~~l~~~~~~~~~d~v~l-S~~~~~~~~ 154 (210)
T 1y80_A 89 GKIVLGTVKGD--LHDIGKNLVAMMLESGG-FTVYNL---GVD-------IEPGKFVEAVKKYQPDIVGM-SALLTTTMM 154 (210)
T ss_dssp CEEEEEEBTTC--CCCHHHHHHHHHHHHTT-CEEEEC---CSS-------BCHHHHHHHHHHHCCSEEEE-ECCSGGGTH
T ss_pred CEEEEEeCCCc--ccHHHHHHHHHHHHHCC-CEEEEC---CCC-------CCHHHHHHHHHHcCCCEEEE-eccccccHH
Confidence 36666665555 33666788889999999 887642 221 12344556666669999999 543 23
Q ss_pred HHHHHHHHHHHcCCCCCCEEEEEecc
Q 008863 244 MTIHLFTEANRMGLVGKDSVWIVTNT 269 (550)
Q Consensus 244 ~~~~il~~a~~~g~~~~~~~~i~~~~ 269 (550)
....+++.+++.|....-.++++...
T Consensus 155 ~~~~~i~~l~~~~~~~~~~v~vGG~~ 180 (210)
T 1y80_A 155 NMKSTIDALIAAGLRDRVKVIVGGAP 180 (210)
T ss_dssp HHHHHHHHHHHTTCGGGCEEEEESTT
T ss_pred HHHHHHHHHHhcCCCCCCeEEEECCC
Confidence 56778888888876433345555443
No 270
>3dnf_A ISPH, LYTB, 4-hydroxy-3-methylbut-2-ENYL diphosphate reductas; trilobal strucure, open alpha/beta, iron, iron-sulfur, isopr biosynthesis; 1.65A {Aquifex aeolicus}
Probab=33.30 E-value=1.5e+02 Score=27.00 Aligned_cols=54 Identities=11% Similarity=0.108 Sum_probs=40.6
Q ss_pred EEEecCCCCHHHH-HHHHHHhhhcCCeEEEEcCCChHHHHHHHHhhccCCccEEe
Q 008863 73 LQIRDHNRDPFQA-ATAAQELINKEKVKVIAGMETWEETAVVAEIASRVQVPILS 126 (550)
Q Consensus 73 ~~~~d~~~~~~~a-~~~~~~li~~~~v~aiiG~~~s~~~~~v~~~~~~~~iP~is 126 (550)
+...|+-|+.-.- ..++.+|..+-.+..|+|...|+.+.-+..+|...+.|..-
T Consensus 186 ~~~~~tIC~AT~~RQ~av~~la~~~D~miVVGg~nSSNT~rL~eia~~~~~~ty~ 240 (297)
T 3dnf_A 186 VKVINTICNATSLRQESVKKLAPEVDVMIIIGGKNSGNTRRLYYISKELNPNTYH 240 (297)
T ss_dssp EEEECCCCSHHHHHHHHHHHHGGGSSEEEEESCTTCHHHHHHHHHHHHHCSSEEE
T ss_pred CCCCCCccHHHHHHHHHHHHHHhhCCEEEEECCCCCchhHHHHHHHHhcCCCEEE
Confidence 3467777766544 44556666667788999999999999999999998887543
No 271
>3ix1_A N-formyl-4-amino-5-aminomethyl-2-methylpyrimidine protein; periplasmic N-formyl-4-amino-5-aminomethyl-2-methylpyrimidin protein; HET: NFM; 2.40A {Bacillus halodurans c-125}
Probab=33.28 E-value=25 Score=32.03 Aligned_cols=47 Identities=9% Similarity=-0.149 Sum_probs=40.0
Q ss_pred ccccchHHHHHHHHHhCCCCCCeEEEecCCChHHHHHhhhcccccEEeec
Q 008863 486 RYDGFSIELFRLVVDHLNYDLPYEFVPHDGVYDDLINGVYDKVNYFNYHD 535 (550)
Q Consensus 486 ~~~GfciDll~~la~~l~f~~~~~~~~~~g~w~Gmi~el~~~~ad~a~~~ 535 (550)
.+.||-+.+-+.+.+..|++ .++++.. .+..++..|..|++|+++++
T Consensus 16 ~~~~~~va~~~g~~~~~Gl~--v~~~~~~-~~~~~~~~l~~G~~D~~~~~ 62 (302)
T 3ix1_A 16 VHTFLYVAIENGYFAEEGLD--VDIVFPT-NPTDPIQLTASGAIPLALSY 62 (302)
T ss_dssp GGHHHHHHHHTTHHHHTTEE--EEEECCS-STTHHHHHHHHTSCSEEEEC
T ss_pred ccHHHHHHHHcChHHHcCCc--EEEecCC-CCchHHHHHHCCCCCEEecC
Confidence 68899999999999999988 7777543 44589999999999999988
No 272
>3d6n_B Aspartate carbamoyltransferase; reactor, chamber, pores, internal cavity, hydrolase, metal-B pyrimidine biosynthesis, hydrolase-transferase; HET: FLC; 2.30A {Aquifex aeolicus}
Probab=33.14 E-value=72 Score=29.03 Aligned_cols=134 Identities=8% Similarity=-0.017 Sum_probs=76.2
Q ss_pred EEEEEEecCCccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEE--cCCChHHHHHH
Q 008863 36 KIGAIVDANSQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIA--GMETWEETAVV 113 (550)
Q Consensus 36 ~IG~i~~~~~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aii--G~~~s~~~~~v 113 (550)
.| .+|...+ .+...+|+.|..++ ++..+.+...++.-.-.+.+....+.++.-++.+|+ .+.. .....+
T Consensus 37 ~~-~lF~e~S---TRTR~SFe~A~~~L----Gg~~i~l~~~~ss~~kgEsl~DTarvls~~~~D~iviR~~~~-~~~~~~ 107 (291)
T 3d6n_B 37 AV-LFFSEPS---TRTRLSFEKAAREL----GIETYLVSGSESSTVKGESFFDTLKTFEGLGFDYVVFRVPFV-FFPYKE 107 (291)
T ss_dssp EE-EEESSCC---HHHHHHHHHHHHHT----TCEEEEEETTTTSCCTTCCHHHHHHHHHHTTCSEEEEEESSC-CCSCHH
T ss_pred EE-EEecCCC---ccHHHHHHHHHHHh----CCeEEEECCccCcccCCCcHHHHHHHHHHhcCCEEEEEcCCh-HHHHHH
Confidence 45 7776553 68889999999998 566666654443333233444444455443333333 3322 222220
Q ss_pred HHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHH---HHcC---CeEEEEEEEcCCCCCcchhHH
Q 008863 114 AEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLA---RKYN---WRRVAAIYEDNVYGGDSGKLA 187 (550)
Q Consensus 114 ~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l---~~~~---w~~v~ii~~~~~~g~~~~~~~ 187 (550)
++...++|+|..+-+ +. .+-.++++|++ +++| -.+++++.+ -.+ ...+.
T Consensus 108 --la~~~~vPVINAG~g--~~-----------------~HPtQaLaDl~Ti~e~~g~l~gl~va~vGD--l~~--~rva~ 162 (291)
T 3d6n_B 108 --IVKSLNLRLVNAGDG--TH-----------------QHPSQGLIDFFTIKEHFGEVKDLRVLYVGD--IKH--SRVFR 162 (291)
T ss_dssp --HHHTCSSEEEEEEET--TT-----------------BCHHHHHHHHHHHHHHHSCCTTCEEEEESC--CTT--CHHHH
T ss_pred --HHHhCCCCEEeCccC--CC-----------------cCcHHHHHHHHHHHHHhCCcCCcEEEEECC--CCC--CchHH
Confidence 445568999985543 11 11246777775 3444 246666553 212 45778
Q ss_pred HHHHHHhcCCCeEEEEE
Q 008863 188 LLAEALQNVSSSEIQSR 204 (550)
Q Consensus 188 ~l~~~l~~~g~~~v~~~ 204 (550)
.+...+...| .++...
T Consensus 163 Sl~~~~~~~g-~~v~~~ 178 (291)
T 3d6n_B 163 SGAPLLNMFG-AKIGVC 178 (291)
T ss_dssp HHHHHHHHTT-CEEEEE
T ss_pred HHHHHHHHCC-CEEEEE
Confidence 8888888888 776543
No 273
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=32.80 E-value=2.9e+02 Score=25.20 Aligned_cols=121 Identities=11% Similarity=0.053 Sum_probs=68.0
Q ss_pred EEEEEEecCCccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhc-CCeEEEEcCCChHHHHHHH
Q 008863 36 KIGAIVDANSQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINK-EKVKVIAGMETWEETAVVA 114 (550)
Q Consensus 36 ~IG~i~~~~~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~-~~v~aiiG~~~s~~~~~v~ 114 (550)
+||++.+........-..|++.|+++.+-.. ....+ +.....+...+.+.+.+++.. .++.||+..... .+..+.
T Consensus 180 ~I~~i~~~~~~~~~~R~~Gf~~al~~~g~~~--~~~~~-~~~~~~~~~~~~~~~~~ll~~~~~~~ai~~~nD~-~A~g~~ 255 (339)
T 3h5o_A 180 RIGFLGAQLDERVMKRLDGYRAALDAADCRD--AGLEW-LDPQPSSMQMGADMLDRALAERPDCDALFCCNDD-LAIGAL 255 (339)
T ss_dssp SEEEEEESCCHHHHHHHHHHHHHHHHTTCCC--GGGEE-EECSCCCHHHHHHHHHHHHHHCTTCCEEEESSHH-HHHHHH
T ss_pred eEEEEeCCCCccHHHHHHHHHHHHHHCCCCC--CChhe-EecCCCCHHHHHHHHHHHHcCCCCCcEEEECChH-HHHHHH
Confidence 5677765543223445678888887754311 12222 224455667777788888864 478899975443 333344
Q ss_pred HhhccCC--cc----EEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHH
Q 008863 115 EIASRVQ--VP----ILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARK 164 (550)
Q Consensus 115 ~~~~~~~--iP----~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~ 164 (550)
..+.+.+ +| ++++... +. .....|-+-.+..+...++...+++|..
T Consensus 256 ~al~~~G~~vP~disvvgfD~~---~~-~~~~~p~lttv~~~~~~~g~~Av~~L~~ 307 (339)
T 3h5o_A 256 ARSQQLGIAVPERLAIAGFNDL---QP-AAWCTPPLTTVATPRRDIGVHAAKALLQ 307 (339)
T ss_dssp HHHHHTTCCTTTTCEEECSBCC---GG-GTTSSSCCBEEECCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCCCCEEEEEECCH---HH-HhccCCCceEEEeCHHHHHHHHHHHHHH
Confidence 4444443 33 5655433 22 2222344556677777788877777643
No 274
>3omb_A Extracellular solute-binding protein, family 1; PSI-2, midwest center for structural genomics, protein struc initiative, MCSG; 2.10A {Bifidobacterium longum subsp}
Probab=32.63 E-value=29 Score=34.92 Aligned_cols=18 Identities=17% Similarity=0.274 Sum_probs=11.9
Q ss_pred HHHHhcCCCCcEEEEEEec
Q 008863 59 VQNFNSDSRNHKLSLQIRD 77 (550)
Q Consensus 59 v~~iN~~~~~~~l~~~~~d 77 (550)
++++++. +|++|++....
T Consensus 61 ~~~fe~~-~gi~V~~~~~~ 78 (535)
T 3omb_A 61 AKDLEAD-CDCKIEWQEVT 78 (535)
T ss_dssp HHHHHHH-HTSEEEEEEEE
T ss_pred HHHHHHH-HCCeEEEEecC
Confidence 4445544 48899988765
No 275
>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A* 1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A* 1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A* 2pud_A* 1jfs_A* 1jh9_A* ...
Probab=32.60 E-value=1.7e+02 Score=26.87 Aligned_cols=118 Identities=13% Similarity=0.115 Sum_probs=63.8
Q ss_pred EEEEEEecC-CccchhHHHHHHHHHHHHhcCCCCcEEEEE-EecCCCCHHHHHHHHHHhhhc-CCeEEEEcCCChHHHHH
Q 008863 36 KIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQ-IRDHNRDPFQAATAAQELINK-EKVKVIAGMETWEETAV 112 (550)
Q Consensus 36 ~IG~i~~~~-~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~-~~d~~~~~~~a~~~~~~li~~-~~v~aiiG~~~s~~~~~ 112 (550)
+||++.... ......-..|++.|+++.+- ++... +.....+...+.+.+.+++.. .++.||+..... .+..
T Consensus 179 ~I~~i~g~~~~~~~~~R~~Gf~~al~~~g~-----~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ai~~~nd~-~A~g 252 (340)
T 1qpz_A 179 EIGVIPGPLERNTGAGRLAGFMKAMEEAMI-----KVPESWIVQGDFEPESGYRAMQQILSQPHRPTAVFCGGDI-MAMG 252 (340)
T ss_dssp CEEEECCCTTSHHHHHHHHHHHHHHHHTTC-----CCCGGGBCCCCSSHHHHHHHHHHHHTSSSCCSEEEESSHH-HHHH
T ss_pred EEEEEeCCCccccHHHHHHHHHHHHHHCCC-----CCChhheEeCCCCHHHHHHHHHHHHcCCCCCcEEEECCHH-HHHH
Confidence 566665432 22234455778777776431 21110 122334666777778888864 468899975433 3333
Q ss_pred HHHhhccCC--cc----EEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHH
Q 008863 113 VAEIASRVQ--VP----ILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLAR 163 (550)
Q Consensus 113 v~~~~~~~~--iP----~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~ 163 (550)
+...+.+.+ +| ++++... +... ...|-+-.+..+...++...+++|.
T Consensus 253 ~~~al~~~G~~vP~disvig~D~~---~~~~-~~~p~lttv~~~~~~~g~~a~~~l~ 305 (340)
T 1qpz_A 253 ALCAADEMGLRVPQDVSLIGYDNV---RNAR-YFTPALTTIHQPKDSLGETAFNMLL 305 (340)
T ss_dssp HHHHHHHTTCCTTTTCEEEEEECC---TTGG-GSSSCCEEEECCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCCCeEEEeECCc---hHhh-ccCCceeEEecCHHHHHHHHHHHHH
Confidence 444444443 34 7776654 2221 1224445566667777777666653
No 276
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=32.46 E-value=1.4e+02 Score=22.63 Aligned_cols=59 Identities=12% Similarity=0.117 Sum_probs=37.2
Q ss_pred chhHHHHHHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcCCCeEEEEEcCCH--HHHHHHHHHHHHcC
Q 008863 183 SGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASL--DMTIHLFTEANRMG 256 (550)
Q Consensus 183 ~~~~~~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~~ii~~~~~~--~~~~~il~~a~~~g 256 (550)
......+...+.+.| ..+.. . .+....++.+.+..+++|++ +... .+...+++.+++..
T Consensus 14 ~~~~~~l~~~L~~~g-~~v~~---~----------~~~~~al~~~~~~~~dlvl~-D~~lp~~~g~~~~~~lr~~~ 74 (136)
T 3t6k_A 14 DTVAEMLELVLRGAG-YEVRR---A----------ASGEEALQQIYKNLPDALIC-DVLLPGIDGYTLCKRVRQHP 74 (136)
T ss_dssp HHHHHHHHHHHHHTT-CEEEE---E----------SSHHHHHHHHHHSCCSEEEE-ESCCSSSCHHHHHHHHHHSG
T ss_pred HHHHHHHHHHHHHCC-CEEEE---e----------CCHHHHHHHHHhCCCCEEEE-eCCCCCCCHHHHHHHHHcCC
Confidence 345677888888888 76542 1 12344556666678899998 6432 34566777777643
No 277
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=32.44 E-value=1.3e+02 Score=27.82 Aligned_cols=121 Identities=11% Similarity=0.089 Sum_probs=68.5
Q ss_pred EEEEEEecCC-cc-chhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhc-CCeEEEEcCCChHHHHH
Q 008863 36 KIGAIVDANS-QM-GKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINK-EKVKVIAGMETWEETAV 112 (550)
Q Consensus 36 ~IG~i~~~~~-~~-g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~-~~v~aiiG~~~s~~~~~ 112 (550)
+||++..... .. ...-..|++.|+++.+-. ..-.+.+.....+...+.+.+.+++.. ..+.||+..... .+..
T Consensus 189 ~I~~i~~~~~~~~~~~~R~~Gf~~al~~~g~~---~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ai~~~nD~-~A~g 264 (355)
T 3e3m_A 189 KIVFLGEKDDDWTRGAARRAGFKRAMREAGLN---PDQEIRLGAPPLSIEDGVAAAELILQEYPDTDCIFCVSDM-PAFG 264 (355)
T ss_dssp SEEEEEESSCTTSHHHHHHHHHHHHHHHTTSC---SCCEEEESCSSCCHHHHHHHHHHHHHHCTTCCEEEESSHH-HHHH
T ss_pred eEEEEccCcccChhHHHHHHHHHHHHHHCCcC---CCccEEEecCCCCHHHHHHHHHHHHcCCCCCcEEEECChH-HHHH
Confidence 5777776442 22 345568888888876332 111233344555667777888888864 578999975443 3333
Q ss_pred HHHhhccCC--cc----EEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHH
Q 008863 113 VAEIASRVQ--VP----ILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARK 164 (550)
Q Consensus 113 v~~~~~~~~--iP----~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~ 164 (550)
+...+.+.+ || ++++... +. .....|-+-.+..+...+++..+++|..
T Consensus 265 ~~~al~~~G~~vP~disvigfD~~---~~-~~~~~p~lttv~~~~~~~g~~A~~~l~~ 318 (355)
T 3e3m_A 265 LLSRLKSIGVAVPEQVSVVGFGNF---EV-SRFASPEISTVRVDPIAIGRETGSLILR 318 (355)
T ss_dssp HHHHHHHHTCCTTTTCEEECSSCC---HH-HHHSSSCCBEEECCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCCceEEEEECCh---HH-HhccCCCceEEecCHHHHHHHHHHHHHH
Confidence 333443333 34 5655433 22 1112244556677777888888887743
No 278
>3rfq_A Pterin-4-alpha-carbinolamine dehydratase MOAB2; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: B3P; 2.25A {Mycobacterium marinum} PDB: 3tcr_A
Probab=32.25 E-value=1.3e+02 Score=25.05 Aligned_cols=63 Identities=13% Similarity=0.172 Sum_probs=43.1
Q ss_pred eEEEEEEEcCC--CCCcchhHHHHHHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcCCCeEEEE
Q 008863 168 RRVAAIYEDNV--YGGDSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIV 237 (550)
Q Consensus 168 ~~v~ii~~~~~--~g~~~~~~~~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~~ii~ 237 (550)
-++++|...|+ .|........+.+.+++.| .++.....++. +.+.+...+++..+.++|+||.
T Consensus 31 ~rvaIistGdEl~~G~~Dsn~~~L~~~L~~~G-~~v~~~~iv~D------d~~~I~~al~~a~~~~~DlVIt 95 (185)
T 3rfq_A 31 GRALVVVVDDRTAHGDEDHSGPLVTELLTEAG-FVVDGVVAVEA------DEVDIRNALNTAVIGGVDLVVS 95 (185)
T ss_dssp EEEEEEEECHHHHTTCCCSHHHHHHHHHHHTT-EEEEEEEEECS------CHHHHHHHHHHHHHTTCSEEEE
T ss_pred CEEEEEEECcccCCCCcCcHHHHHHHHHHHCC-CEEEEEEEeCC------CHHHHHHHHHHHHhCCCCEEEE
Confidence 46777776542 1111445677888999999 88887766654 3466777777765457899998
No 279
>1zq6_A Otcase, ornithine carbamoyltransferase; alpha/beta two-domain; HET: AOR; 1.80A {Xanthomonas campestris} PDB: 1yh0_A* 1zq2_A 1yh1_A* 1zq8_A* 3kzc_A* 3kzk_A* 3kzm_A* 3kzn_A* 3kzo_A* 3m4j_A* 3m5d_A* 3m5c_A* 2g6a_A* 3l05_A* 2g65_A* 3l02_A* 3m4n_A* 2g6c_A* 3l06_A* 2g68_A* ...
Probab=32.19 E-value=2.2e+02 Score=26.65 Aligned_cols=136 Identities=11% Similarity=0.161 Sum_probs=76.6
Q ss_pred EEEEEEEecCCccchhHHHHHHHHHHHHhcCCCCcEEEEEEe------c---------CCCC-HHHHHHHHHHhhhcCCe
Q 008863 35 TKIGAIVDANSQMGKQAITAMKIAVQNFNSDSRNHKLSLQIR------D---------HNRD-PFQAATAAQELINKEKV 98 (550)
Q Consensus 35 i~IG~i~~~~~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~------d---------~~~~-~~~a~~~~~~li~~~~v 98 (550)
-.|+.+|...+ .+....|+.|+.++ ++..+.+... + .++. ...+++....+ . .+
T Consensus 59 k~la~lF~epS---TRTR~SFE~A~~~L----Gg~~i~l~~~~~ss~~~s~~~~vm~~~kgEsl~DTarvLs~y-~--D~ 128 (359)
T 1zq6_A 59 KSIALVFFNPS---MRTRTSFELGAFQL----GGHAVVLQPGKDAWPIEFNLGTVMDGDTEEHIAEVARVLGRY-V--DL 128 (359)
T ss_dssp CEEEEEESSCC---HHHHHHHHHHHHHT----TCEEEEECHHHHSCCEECSSSCCCCSSCCEEHHHHHHHHHHH-C--SE
T ss_pred CEEEEEeCCCC---cchhhhHHHHHHHc----CCeEEEeCCCcccccccccccccccCCCCCcHHHHHHHHHHh-C--cE
Confidence 56788887664 68889999999998 4555555433 2 2222 22333333333 1 23
Q ss_pred EEEEcCCC---hH---HHHHHHHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHH---HHcCC--
Q 008863 99 KVIAGMET---WE---ETAVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLA---RKYNW-- 167 (550)
Q Consensus 99 ~aiiG~~~---s~---~~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l---~~~~w-- 167 (550)
.++=.+.. .. ....+..++....+|+|..+.. . .| .++++|++ +++|.
T Consensus 129 IviR~~~~~~~~~~~~~~~~~~~lA~~~~vPVINag~g--~--------------HP-----tQaLaDl~TI~E~~g~~~ 187 (359)
T 1zq6_A 129 IGVRAFPKFVDWSKDREDQVLKSFAKYSPVPVINMETI--T--------------HP-----CQELAHALALQEHFGTPD 187 (359)
T ss_dssp EEEECCCCSSCHHHHTTCHHHHHHHHHCSSCEEESSSS--C--------------CH-----HHHHHHHHHHHHHHTSSC
T ss_pred EEEeccccccccccccchHHHHHHHHhCCCCEEeCCCC--C--------------Cc-----HHHHHHHHHHHHHhCCCc
Confidence 33334411 00 1223445566678999996644 0 23 46777764 45554
Q ss_pred ---eEEEEEEEcCC-C-CCcchhHHHHHHHHhcCCCeEEEEE
Q 008863 168 ---RRVAAIYEDNV-Y-GGDSGKLALLAEALQNVSSSEIQSR 204 (550)
Q Consensus 168 ---~~v~ii~~~~~-~-g~~~~~~~~l~~~l~~~g~~~v~~~ 204 (550)
.+|++.+-.|- + | ...+..+...+...| .++...
T Consensus 188 l~glkvvva~vGDl~~~~--nrva~Sl~~~~~~~G-~~v~~~ 226 (359)
T 1zq6_A 188 LRGKKYVLTWTYHPKPLN--TAVANSALTIATRMG-MDVTLL 226 (359)
T ss_dssp CTTCEEEEEECCCSSCCC--SHHHHHHHHHHHHTT-CEEEEE
T ss_pred ccCCeeEEEEEecccccc--cchHHHHHHHHHHcC-CEEEEE
Confidence 46334333331 1 2 467888888888888 776543
No 280
>3iwt_A 178AA long hypothetical molybdenum cofactor biosy protein B; biosynthesis, structural genomics, UNKN function, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii}
Probab=32.16 E-value=1.3e+02 Score=24.68 Aligned_cols=48 Identities=13% Similarity=0.155 Sum_probs=34.0
Q ss_pred hHHHHHHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhc-CCCeEEEEEcC
Q 008863 185 KLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQD-KQSRVFIVLQA 240 (550)
Q Consensus 185 ~~~~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~-~~~~~ii~~~~ 240 (550)
....+.+.+.+.| +++.....++. +.+.+...+.+... .++|+||. .+
T Consensus 41 ng~~L~~~L~~~G-~~v~~~~iV~D------d~~~i~~al~~~~a~~~~DlVit-tG 89 (178)
T 3iwt_A 41 SGDIIKQLLIENG-HKIIGYSLVPD------DKIKILKAFTDALSIDEVDVIIS-TG 89 (178)
T ss_dssp HHHHHHHHHHHTT-CEEEEEEEECS------CHHHHHHHHHHHHTCTTCCEEEE-ES
T ss_pred hHHHHHHHHHHCC-CEEEEEEEeCC------CHHHHHHHHHHHHhcCCCCEEEe-cC
Confidence 3467888999999 99887776664 33556666666543 47899998 44
No 281
>2ioy_A Periplasmic sugar-binding protein; ribose binding protein, thermophilic proteins; HET: RIP; 1.90A {Thermoanaerobacter tengcongensis}
Probab=32.06 E-value=1.1e+02 Score=27.21 Aligned_cols=78 Identities=9% Similarity=0.086 Sum_probs=47.0
Q ss_pred EEEEEEEcC--CCCCcchhHHHHHHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcCCCeEEEEEcC-CHHHH
Q 008863 169 RVAAIYEDN--VYGGDSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQA-SLDMT 245 (550)
Q Consensus 169 ~v~ii~~~~--~~g~~~~~~~~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~~ii~~~~-~~~~~ 245 (550)
.++++..+. .|. ....+.+.+.+++.| ..+.... ... +...-...++.+.+.+.|.||+ .. ..+..
T Consensus 3 ~Igvi~~~~~~~f~--~~~~~gi~~~~~~~g-~~~~~~~--~~~-----~~~~~~~~i~~l~~~~vdgiIi-~~~~~~~~ 71 (283)
T 2ioy_A 3 TIGLVISTLNNPFF--VTLKNGAEEKAKELG-YKIIVED--SQN-----DSSKELSNVEDLIQQKVDVLLI-NPVDSDAV 71 (283)
T ss_dssp EEEEEESCSSSHHH--HHHHHHHHHHHHHHT-CEEEEEE--CTT-----CHHHHHHHHHHHHHTTCSEEEE-CCSSTTTT
T ss_pred EEEEEecCCCCHHH--HHHHHHHHHHHHhcC-cEEEEec--CCC-----CHHHHHHHHHHHHHcCCCEEEE-eCCchhhh
Confidence 577777643 344 567777888888888 7765432 111 2233345667777778888887 43 33333
Q ss_pred HHHHHHHHHcCC
Q 008863 246 IHLFTEANRMGL 257 (550)
Q Consensus 246 ~~il~~a~~~g~ 257 (550)
...++.+.+.|+
T Consensus 72 ~~~~~~~~~~~i 83 (283)
T 2ioy_A 72 VTAIKEANSKNI 83 (283)
T ss_dssp HHHHHHHHHTTC
T ss_pred HHHHHHHHHCCC
Confidence 345667777665
No 282
>4es6_A Uroporphyrinogen-III synthase; heme-biosynthesis, cytoplasmi; 2.22A {Pseudomonas aeruginosa}
Probab=31.93 E-value=32 Score=30.52 Aligned_cols=90 Identities=14% Similarity=0.144 Sum_probs=52.7
Q ss_pred cHHhHHHHHHHHH-----HcCCeEEEEEEEcCCCCCcchhHHHHHHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHH
Q 008863 151 DSEQMKCIADLAR-----KYNWRRVAAIYEDNVYGGDSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELK 225 (550)
Q Consensus 151 ~~~~~~al~~~l~-----~~~w~~v~ii~~~~~~g~~~~~~~~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~ 225 (550)
....++.+++.+. ...-++|.++..+.. ...+.+.|.+.| ..+.....+...... ..... ..+
T Consensus 112 ~~~~~e~L~~~l~~~~~~~~~~~~vL~~rg~~~-------r~~L~~~L~~~G-~~v~~~~vY~~~~~~-~~~~~---~~~ 179 (254)
T 4es6_A 112 QGDDSEALLALPAFQDSLRVHDPKVLIMRGEGG-------REFLAERLRGQG-VQVDYLPLYRRRAPD-YPAGE---LLA 179 (254)
T ss_dssp SCCSHHHHHTCHHHHHHTCSSSCEEEEEECSSC-------CCHHHHHHHHTT-CEEEEEECEEEECCC-CCTTH---HHH
T ss_pred CCCCHHHHHHhHhhcccccCCCCEEEEEcCCcc-------HHHHHHHHHHCC-CEEEEEeEEEeeCCC-CCHHH---HHH
Confidence 3345678888775 345578877775432 345667777888 776655444322100 01122 233
Q ss_pred HhhcCCCeEEEEEcCCHHHHHHHHHHHHH
Q 008863 226 KVQDKQSRVFIVLQASLDMTIHLFTEANR 254 (550)
Q Consensus 226 ~i~~~~~~~ii~~~~~~~~~~~il~~a~~ 254 (550)
.+.....++|++ .++..+..++..+.+
T Consensus 180 ~l~~~~~d~v~f--tS~s~v~~~~~~~~~ 206 (254)
T 4es6_A 180 RVRAERLNGLVV--SSGQGLQNLYQLAAA 206 (254)
T ss_dssp HHHHTTCCEEEC--CSHHHHHHHHHHHGG
T ss_pred HHHhCCCCEEEE--cCHHHHHHHHHHhhH
Confidence 444556777665 778888888877654
No 283
>3uor_A ABC transporter sugar binding protein; ALFA/beta protein, periplasmic-binding protein, maltose, SUG binding protein; 2.20A {Xanthomonas axonopodis PV}
Probab=31.78 E-value=62 Score=31.59 Aligned_cols=27 Identities=11% Similarity=0.133 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHhcCCCCcEEEEEEec
Q 008863 51 AITAMKIAVQNFNSDSRNHKLSLQIRD 77 (550)
Q Consensus 51 ~~~a~~~Av~~iN~~~~~~~l~~~~~d 77 (550)
....++-.++++++..||++|++....
T Consensus 40 ~~~~~~~~~~~F~~~~pgi~V~~~~~~ 66 (458)
T 3uor_A 40 EAEVVAELVADFEKQNPTIHVDVQNIP 66 (458)
T ss_dssp HHHHHHHHHHHHHTTCTTEEEEEEECC
T ss_pred cHHHHHHHHHHHHHHCCCcEEEEEEcC
Confidence 446788889999999889999988763
No 284
>4ekn_B Aspartate carbamoyltransferase; atcase, aspartate transcarbamoylase, pyrimidine biosynthesis thermostability, substrate channeling; 2.50A {Methanocaldococcus jannaschii} PDB: 3e2p_A 2rgw_A
Probab=31.77 E-value=3e+02 Score=25.11 Aligned_cols=132 Identities=12% Similarity=0.141 Sum_probs=77.3
Q ss_pred EEEEEEEecCCccchhHHHHHHHHHHHHhcCCCCcEEEEEE-ecCC---C-CHHHHHHHHHHhhhcCCeEEEEcCCChHH
Q 008863 35 TKIGAIVDANSQMGKQAITAMKIAVQNFNSDSRNHKLSLQI-RDHN---R-DPFQAATAAQELINKEKVKVIAGMETWEE 109 (550)
Q Consensus 35 i~IG~i~~~~~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~-~d~~---~-~~~~a~~~~~~li~~~~v~aiiG~~~s~~ 109 (550)
-.|+.+|...+ .+...+|+.|+.++ ++..+.+.. .++. + .....++....+. .+.++=.+.. ..
T Consensus 41 k~la~lF~e~S---TRTR~SFe~A~~~L----Gg~~i~l~~~~~ss~~kgEsl~DTarvls~~~---D~iviR~~~~-~~ 109 (306)
T 4ekn_B 41 KILATVFYEPS---TRTRLSFETAMKRL----GGEVITMTDLKSSSVAKGESLIDTIRVISGYA---DIIVLRHPSE-GA 109 (306)
T ss_dssp CEEEEEESSCC---HHHHHHHHHHHHHT----TCEEEEECCCTTTTSSSSCCHHHHHHHHHHHC---SEEEEECSST-TH
T ss_pred ceEEEEEcCCC---hhHHhhHHHHHHHc----CCEEEEcCCcccccCCCCCCHHHHHHHHHHhC---cEEEEEcCCh-HH
Confidence 46888987764 68889999999998 566666543 2322 2 2233344333332 3333334432 23
Q ss_pred HHHHHHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHH---HHc---CCeEEEEEEEcCCCCCcc
Q 008863 110 TAVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLA---RKY---NWRRVAAIYEDNVYGGDS 183 (550)
Q Consensus 110 ~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l---~~~---~w~~v~ii~~~~~~g~~~ 183 (550)
. ..++....+|+|..+.+ + .. + -.++++|++ +++ ...+|+++.+- .+ .
T Consensus 110 ~---~~lA~~~~vPVINag~g--~-----~~-------H-----PtQ~LaDl~Ti~e~~g~l~glkva~vGD~-~~---~ 163 (306)
T 4ekn_B 110 A---RLASEYSQVPIINAGDG--S-----NQ-------H-----PTQTLLDLYTIMREIGRIDGIKIAFVGDL-KY---G 163 (306)
T ss_dssp H---HHHHHHCSSCEEESCSS--S-----SC-------C-----HHHHHHHHHHHHHHHSCSTTCEEEEESCT-TT---C
T ss_pred H---HHHHHhCCCCEEeCCCC--C-----Cc-------C-----cHHHHHHHHHHHHHhCCcCCCEEEEEcCC-CC---C
Confidence 2 34455678999996543 1 11 1 246777765 344 34577777632 22 2
Q ss_pred hhHHHHHHHHhcC-CCeEEEEE
Q 008863 184 GKLALLAEALQNV-SSSEIQSR 204 (550)
Q Consensus 184 ~~~~~l~~~l~~~-g~~~v~~~ 204 (550)
..+..+...+... | +++...
T Consensus 164 rva~Sl~~~~~~~~G-~~v~~~ 184 (306)
T 4ekn_B 164 RTVHSLVYALSLFEN-VEMYFV 184 (306)
T ss_dssp HHHHHHHHHHHTSSS-CEEEEE
T ss_pred cHHHHHHHHHHhcCC-CEEEEE
Confidence 4678888888888 8 776543
No 285
>2yfk_A Aspartate/ornithine carbamoyltransferase; transcarbamylase; 2.55A {Enterococcus faecalis}
Probab=31.45 E-value=3.6e+02 Score=25.90 Aligned_cols=137 Identities=10% Similarity=0.071 Sum_probs=76.5
Q ss_pred EEEEEecCCccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEc--CCC---hH-HH
Q 008863 37 IGAIVDANSQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAG--MET---WE-ET 110 (550)
Q Consensus 37 IG~i~~~~~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG--~~~---s~-~~ 110 (550)
++.+|-..+ .+....|+.|+.++ ++..+.+...++.-.-.+.+....+.++. -+.+|+- +.. .. ..
T Consensus 63 ~~~lF~epS---TRTR~SFE~A~~~L----Gg~vi~l~~~~ss~~kGEsl~DTarvLs~-y~D~IviRh~~~~g~~~~~~ 134 (418)
T 2yfk_A 63 GISLFRDNS---TRTRFSFASACNLL----GLEVQDLDEGKSQISHGETVRETANMISF-MADIIGIRDDMYIGKGNAYM 134 (418)
T ss_dssp EEEEEC------CHHHHHHHHHHHHH----TCEEEEECC--------CHHHHHHHHTTT-TEEEEEEEECSSTTHHHHHH
T ss_pred EEEEecCCC---ccHHHHHHHHHHHC----CCeEEecCCCcccCCCCcCHHHHHHHHHH-hCcEEEEecccccCcchHHH
Confidence 456775553 58889999999999 45566554444333334456666666664 3566553 321 11 11
Q ss_pred HHHHHhhc---cC-----CccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHH---HHcC------CeEEEEE
Q 008863 111 AVVAEIAS---RV-----QVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLA---RKYN------WRRVAAI 173 (550)
Q Consensus 111 ~~v~~~~~---~~-----~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l---~~~~------w~~v~ii 173 (550)
..++..+. .. .+|+|..+.. ..+-.++++|++ +++| -.+|+++
T Consensus 135 ~~lA~~~~~~~~~~~~~~~~PVINa~~~--------------------~~HPtQaLaDl~TI~E~~G~l~~l~Glkva~v 194 (418)
T 2yfk_A 135 HEVSESVQEGYKDGVLEQRPTLVNLQCD--------------------IDHPTQAMADALHLIHEFGGIENLKGKKVAMT 194 (418)
T ss_dssp HHHHHHHHHHHHTTSCSSCCEEEEEEES--------------------SCCHHHHHHHHHHHHHHTTSSGGGTTCEEEEE
T ss_pred HHHHHHHHhhhcccccCCCCeEEeCCCC--------------------ccChHHHHHHHHHHHHHhCCccccCCCEEEEE
Confidence 22333321 22 4568885422 112347788875 4566 2488888
Q ss_pred EEcC-CCCCcc--hhHHHHHHHHhcCCCeEEEEE
Q 008863 174 YEDN-VYGGDS--GKLALLAEALQNVSSSEIQSR 204 (550)
Q Consensus 174 ~~~~-~~g~~~--~~~~~l~~~l~~~g~~~v~~~ 204 (550)
++-+ .+| + ..+..+...+...| +.+...
T Consensus 195 gd~~~s~G--d~nnVa~Sli~~l~~lG-~~v~l~ 225 (418)
T 2yfk_A 195 WAYSPSYG--KPLSVPQGIVGLMTRLG-MDVVLA 225 (418)
T ss_dssp CCCCSSSC--CCSHHHHHHHHHHGGGT-CEEEEE
T ss_pred eccccccC--ccchHHHHHHHHHHHcC-CEEEEE
Confidence 8533 345 4 67889999999999 877653
No 286
>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, STR genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus}
Probab=31.44 E-value=51 Score=29.94 Aligned_cols=87 Identities=15% Similarity=0.038 Sum_probs=52.3
Q ss_pred HHHHHHcCCeEEEEEEEc-------CCCCCcchhHHHHHHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcCC
Q 008863 159 ADLARKYNWRRVAAIYED-------NVYGGDSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQ 231 (550)
Q Consensus 159 ~~~l~~~~w~~v~ii~~~-------~~~g~~~~~~~~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~~ 231 (550)
+.-|+..+-+.|+++..+ +.|. ..+.+.+.+.+.+.| ..+... .... +.......++.+...+
T Consensus 14 Ar~L~~~~~~~Igvi~~~~~~~~~~~~~~--~~~~~gi~~~a~~~g-~~~~~~---~~~~----~~~~~~~~~~~l~~~~ 83 (305)
T 3huu_A 14 ARTLITNKTLTIGLIQKSSAPEIRQNPFN--SDVLNGINQACNVRG-YSTRMT---VSEN----SGDLYHEVKTMIQSKS 83 (305)
T ss_dssp -------CCCEEEEECSCCSHHHHTSHHH--HHHHHHHHHHHHHHT-CEEEEC---CCSS----HHHHHHHHHHHHHTTC
T ss_pred HHHhhhCCCCEEEEEeCCCccccccCcHH--HHHHHHHHHHHHHCC-CEEEEE---eCCC----ChHHHHHHHHHHHhCC
Confidence 334444556789998876 2355 677788888899999 776542 1111 2233456677788889
Q ss_pred CeEEEEEcCCHHHHHHHHHHHHHcCC
Q 008863 232 SRVFIVLQASLDMTIHLFTEANRMGL 257 (550)
Q Consensus 232 ~~~ii~~~~~~~~~~~il~~a~~~g~ 257 (550)
.|.||+ ...... ...+..+.+.|+
T Consensus 84 vdgiIi-~~~~~~-~~~~~~l~~~~i 107 (305)
T 3huu_A 84 VDGFIL-LYSLKD-DPIEHLLNEFKV 107 (305)
T ss_dssp CSEEEE-SSCBTT-CHHHHHHHHTTC
T ss_pred CCEEEE-eCCcCC-cHHHHHHHHcCC
Confidence 999998 543322 256677777775
No 287
>2xmo_A LMO2642 protein; phosphodiesterase, hydrolase; 1.70A {Listeria monocytogenes}
Probab=30.99 E-value=1.1e+02 Score=29.75 Aligned_cols=14 Identities=7% Similarity=0.057 Sum_probs=11.6
Q ss_pred CCCcEEEEEEEecC
Q 008863 31 IEEVTKIGAIVDAN 44 (550)
Q Consensus 31 ~~~~i~IG~i~~~~ 44 (550)
.+++++|..+.+.+
T Consensus 36 ~~~~~~i~~iSD~H 49 (443)
T 2xmo_A 36 KDRNLSMVVTTDVH 49 (443)
T ss_dssp SCCCEEEEEECCCC
T ss_pred CCCCeEEEEEeCCC
Confidence 34679999999988
No 288
>3r8n_P 30S ribosomal protein S16; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 1p6g_P 1p87_P* 1vs7_P* 2avy_P 2aw7_P 1vs5_P 2i2u_P 2i2p_P* 2qan_P* 2qb9_P* 2qbb_P* 2qbd_P 2qbf_P 2qbh_P* 2qbj_P* 2qou_P* 2qow_P* 2qoy_P* 2qp0_P* 2vho_P ...
Probab=30.67 E-value=1.1e+02 Score=21.55 Aligned_cols=34 Identities=15% Similarity=0.218 Sum_probs=26.1
Q ss_pred eEEEeCCCCCCCCceEEEEeeC-----Ce-eeEEEEEeCC
Q 008863 371 KIRFKDGELLNADTLRIVNVVG-----KK-YKELDFWLPN 404 (550)
Q Consensus 371 ~i~f~~~g~~~~~~~~i~~~~~-----~~-~~~vG~w~~~ 404 (550)
.|++...|....+.|.|+-.+. +. .+.||+|+|.
T Consensus 3 kIRL~R~G~kk~PfYrIVvadsr~~RdGr~IE~lG~YnP~ 42 (82)
T 3r8n_P 3 TIRLARHGAKKRPFYQVVVADSRNARNGRFIERVGFFNPI 42 (82)
T ss_dssp EEEEEECSCTTSCCEEEEEEETTSCTTSCEEEEEEEECTT
T ss_pred EEhhhcCCCCCCCEEEEEEeecCCCCCCCceeeeeEEcCC
Confidence 3677778888789999998863 33 5779999984
No 289
>2qu7_A Putative transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus saprophyticus subsp}
Probab=30.55 E-value=1.4e+02 Score=26.55 Aligned_cols=117 Identities=14% Similarity=0.155 Sum_probs=63.9
Q ss_pred EEEEEEecC-CccchhHHHHHHHHHHHHhcCCCCcEEEE-EEe--cCCC----CHHHHHHHHHHhhhcCCeEEEEcCCCh
Q 008863 36 KIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSL-QIR--DHNR----DPFQAATAAQELINKEKVKVIAGMETW 107 (550)
Q Consensus 36 ~IG~i~~~~-~~~g~~~~~a~~~Av~~iN~~~~~~~l~~-~~~--d~~~----~~~~a~~~~~~li~~~~v~aiiG~~~s 107 (550)
+||++.... ......-..|++.++++.+ .++.. .+. .... +...+.+.+.+++.. ++.+|+.....
T Consensus 124 ~I~~i~~~~~~~~~~~R~~gf~~~l~~~g-----~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~ai~~~~d~ 197 (288)
T 2qu7_A 124 EVGLLLANPNISTTIGRKNGYNKAISEFD-----LNVNPSLIHYSDQQLGTNAQIYSGYEATKTLLSK-GIKGIVATNHL 197 (288)
T ss_dssp CEEEEECCTTSHHHHHHHHHHHHHHHHTT-----CCCCGGGEEECCSSCSHHHHHHHHHHHHHHHHHT-TCCEEEECSHH
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHHHHcC-----CCCCcceEEeccCCccccCCHHHHHHHHHHHHhc-CCCEEEECCcH
Confidence 577776543 2233455678888877753 22211 022 3333 455677778888876 88999975433
Q ss_pred HHHHHHHHhhccCC--cc----EEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHH
Q 008863 108 EETAVVAEIASRVQ--VP----ILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLAR 163 (550)
Q Consensus 108 ~~~~~v~~~~~~~~--iP----~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~ 163 (550)
.+..+...+.+.+ +| ++++... +.... ..|.+-.+..+...++...+++|.
T Consensus 198 -~a~g~~~al~~~g~~vP~di~vvg~d~~---~~~~~-~~p~lttv~~~~~~~g~~a~~~l~ 254 (288)
T 2qu7_A 198 -LLLGALQAIKESEKEIKKDVIIVGFDDS---YWNEI-YTPKLTVISQPVKEMGQVAAKMIY 254 (288)
T ss_dssp -HHHHHHHHHHHSSCCBTTTBEEEEESCC---THHHH-SSSCCCEEECCHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHhCCCCCCceEEEEeCCh---HHHhh-cCCCccEEecCHHHHHHHHHHHHH
Confidence 3333444444443 34 7776654 22111 123344556666677777777653
No 290
>3lmz_A Putative sugar isomerase; structural genomics, joint center structural genomics, JCSG, protein structure initiative, PS isomerase; HET: MSE CIT PGE; 1.44A {Parabacteroides distasonis}
Probab=30.29 E-value=1.7e+02 Score=25.59 Aligned_cols=94 Identities=1% Similarity=-0.060 Sum_probs=64.4
Q ss_pred HHHHHHHHHHcCCeEEEEEEEc--CCCCCcchhHHHHHHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcCCC
Q 008863 155 MKCIADLARKYNWRRVAAIYED--NVYGGDSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQS 232 (550)
Q Consensus 155 ~~al~~~l~~~~w~~v~ii~~~--~~~g~~~~~~~~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~~~ 232 (550)
....++.++..|.+.|-+.... .+.. ....+.+++.+++.| +.+........ . ....+...++..+..++
T Consensus 32 ~~~~l~~~~~~G~~~vEl~~~~~~~~~~--~~~~~~~~~~l~~~g-l~i~~~~~~~~-~----~~~~~~~~i~~A~~lGa 103 (257)
T 3lmz_A 32 LDTTLKTLERLDIHYLCIKDFHLPLNST--DEQIRAFHDKCAAHK-VTGYAVGPIYM-K----SEEEIDRAFDYAKRVGV 103 (257)
T ss_dssp HHHHHHHHHHTTCCEEEECTTTSCTTCC--HHHHHHHHHHHHHTT-CEEEEEEEEEE-C----SHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhCCCEEEEecccCCCCCC--HHHHHHHHHHHHHcC-CeEEEEecccc-C----CHHHHHHHHHHHHHhCC
Confidence 4566777888898888776542 1222 445688999999999 88765433211 1 34567777777777788
Q ss_pred eEEEEEcCCHHHHHHHHHHHHHcCC
Q 008863 233 RVFIVLQASLDMTIHLFTEANRMGL 257 (550)
Q Consensus 233 ~~ii~~~~~~~~~~~il~~a~~~g~ 257 (550)
+.|++ ....+....+...|.+.|+
T Consensus 104 ~~v~~-~p~~~~l~~l~~~a~~~gv 127 (257)
T 3lmz_A 104 KLIVG-VPNYELLPYVDKKVKEYDF 127 (257)
T ss_dssp SEEEE-EECGGGHHHHHHHHHHHTC
T ss_pred CEEEe-cCCHHHHHHHHHHHHHcCC
Confidence 88888 6666677777777777776
No 291
>3hs3_A Ribose operon repressor; PSI-II, NYSGXRC, periplasmic binding protein, structural genomics, protein structure initiative; 1.60A {Lactobacillus acidophilus}
Probab=30.06 E-value=2.8e+02 Score=24.27 Aligned_cols=116 Identities=16% Similarity=0.093 Sum_probs=65.0
Q ss_pred EEEEEEEecC-CccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhc-CCeEEEEcCCChHHHHH
Q 008863 35 TKIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINK-EKVKVIAGMETWEETAV 112 (550)
Q Consensus 35 i~IG~i~~~~-~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~-~~v~aiiG~~~s~~~~~ 112 (550)
=+||++.... ......-..|++.++++. |.++...+.....+ .+.+.+++.. .++.+|+..... .+..
T Consensus 123 ~~I~~i~~~~~~~~~~~R~~Gf~~~l~~~-----g~~~~~~~~~~~~~----~~~~~~~l~~~~~~~ai~~~~d~-~A~g 192 (277)
T 3hs3_A 123 EKVLIQHWPLSLPTIRERIEAMTAEASKL-----KIDYLLEETPENNP----YISAQSALNKSNQFDAIITVNDL-YAAE 192 (277)
T ss_dssp CEEEEEESCTTSHHHHHHHHHHHHHHHHT-----TCEEEEEECCSSCH----HHHHHHHHHTGGGCSEEECSSHH-HHHH
T ss_pred CEEEEEeCCCcCccHHHHHHHHHHHHHHC-----CCCCCCCCccCCch----HHHHHHHHcCCCCCCEEEECCHH-HHHH
Confidence 3788887654 333345568888888774 44554432222222 4556666653 578899975443 3333
Q ss_pred HHHhhccCC------ccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHH
Q 008863 113 VAEIASRVQ------VPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARK 164 (550)
Q Consensus 113 v~~~~~~~~------iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~ 164 (550)
+...+.+.+ +.++++... +. .....|.+-.+..+...+++..+++|..
T Consensus 193 ~~~al~~~g~~vP~di~vig~d~~---~~-~~~~~p~lttv~~~~~~~g~~av~~l~~ 246 (277)
T 3hs3_A 193 IIKEAKRRNLKIPDDFQLVGYDNN---IL-CGYTSPTISTIDQNPKLIGQTAAHRLLD 246 (277)
T ss_dssp HHHHHHHTTCCTTTTCEEECSBCC---GG-GGTSSSCCBEEECCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCCceEEEeeCCc---HH-HhcCCCCccEEecCHHHHHHHHHHHHHH
Confidence 444444443 336665544 22 2222344556667777788777777643
No 292
>3pzy_A MOG; ssgcid, seattle structural genomics center for infectious DI biosynthetic protein; 1.80A {Mycobacterium avium subsp} PDB: 3oi9_A 2g4r_A
Probab=29.90 E-value=1.1e+02 Score=25.01 Aligned_cols=62 Identities=18% Similarity=0.160 Sum_probs=40.0
Q ss_pred eEEEEEEEcCC--CC-CcchhHHHHHHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcCCCeEEEE
Q 008863 168 RRVAAIYEDNV--YG-GDSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIV 237 (550)
Q Consensus 168 ~~v~ii~~~~~--~g-~~~~~~~~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~~ii~ 237 (550)
-++++|...|+ .| -.......+.+.+++.| .++.....++. + +.+...+++..+.++|+||.
T Consensus 8 ~rv~ii~tGdEl~~G~i~Dsn~~~l~~~l~~~G-~~v~~~~iv~D------d-~~i~~al~~a~~~~~DlVit 72 (164)
T 3pzy_A 8 RSARVIIASTRASSGEYEDRCGPIITEWLAQQG-FSSAQPEVVAD------G-SPVGEALRKAIDDDVDVILT 72 (164)
T ss_dssp CEEEEEEECHHHHC----CCHHHHHHHHHHHTT-CEECCCEEECS------S-HHHHHHHHHHHHTTCSEEEE
T ss_pred CEEEEEEECCCCCCCceeeHHHHHHHHHHHHCC-CEEEEEEEeCC------H-HHHHHHHHHHHhCCCCEEEE
Confidence 36677766542 11 00334567888889999 88776555542 5 66777777766557899998
No 293
>3qsl_A Putative exported protein; unknown, structural genomics, PSI-biology, midwest center FO structural genomics, MCSG, unknown function; HET: MSE CIT; 2.00A {Bordetella bronchiseptica}
Probab=29.67 E-value=37 Score=31.43 Aligned_cols=50 Identities=8% Similarity=-0.117 Sum_probs=34.7
Q ss_pred cccchHHHHHHHHHhCCCCCCeEEEecCCChHHHHHhhhcccccEEeeceeee
Q 008863 487 YDGFSIELFRLVVDHLNYDLPYEFVPHDGVYDDLINGVYDKVNYFNYHDKLLF 539 (550)
Q Consensus 487 ~~GfciDll~~la~~l~f~~~~~~~~~~g~w~Gmi~el~~~~ad~a~~~~ti~ 539 (550)
+.++-+-.-+...+..|++ +++++ .+.|..++..|..|++|+++++.+.+
T Consensus 47 ~~~~~~a~~~g~~~~~g~~--v~~~~-~~~~~~~~~~l~~G~~D~~~~~~~~~ 96 (346)
T 3qsl_A 47 YLPLTIAEVKGFFKDEGLD--VSIAD-FAGGSKALQAVVGGSADVVSGAFEHT 96 (346)
T ss_dssp GHHHHHHHHTTHHHHTTCE--EEEEE-CSSHHHHHHHHHTTSCSEEEEETHHH
T ss_pred hhHHHHHHHCCchHhhCCe--EEEEe-cCChHHHHHHHHCCCCCEEccchHHH
Confidence 3344333333334566877 77764 35799999999999999999887544
No 294
>1oj7_A Hypothetical oxidoreductase YQHD; structural genomics; HET: NZQ; 2.0A {Escherichia coli} SCOP: e.22.1.2
Probab=29.56 E-value=69 Score=30.86 Aligned_cols=84 Identities=15% Similarity=0.209 Sum_probs=50.7
Q ss_pred HHHHHHHcCCeEEEEEEEcCCCCCcchhHHHHHHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcCCCeEEEE
Q 008863 158 IADLARKYNWRRVAAIYEDNVYGGDSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIV 237 (550)
Q Consensus 158 l~~~l~~~~w~~v~ii~~~~~~g~~~~~~~~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~~ii~ 237 (550)
+.++++ ++ +++.+|+++.... .....+.+.+.++ | +++.....+.+.. ..+.....++.+++.++|.||-
T Consensus 43 l~~~l~-~g-~r~liVtd~~~~~-~~g~~~~v~~~L~--g-~~~~~f~~v~~~p----~~~~v~~~~~~~~~~~~D~IIa 112 (408)
T 1oj7_A 43 LREQIP-HD-ARVLITYGGGSVK-KTGVLDQVLDALK--G-MDVLEFGGIEPNP----AYETLMNAVKLVREQKVTFLLA 112 (408)
T ss_dssp HHHHSC-TT-CEEEEEECSSHHH-HHSHHHHHHHHTT--T-SEEEEECCCCSSC----BHHHHHHHHHHHHHHTCCEEEE
T ss_pred HHHHHh-cC-CEEEEEECCchhh-hccHHHHHHHHhC--C-CEEEEeCCcCCCc----CHHHHHHHHHHHHHcCCCEEEE
Confidence 555566 67 8999998654321 0125677777776 7 6653222222222 4566777888888889999986
Q ss_pred EcC--CHHHHHHHHHHH
Q 008863 238 LQA--SLDMTIHLFTEA 252 (550)
Q Consensus 238 ~~~--~~~~~~~il~~a 252 (550)
.+ +.-++..++...
T Consensus 113 -vGGGsviD~AK~iA~~ 128 (408)
T 1oj7_A 113 -VGGGSVLDGTKFIAAA 128 (408)
T ss_dssp -EESHHHHHHHHHHHHH
T ss_pred -eCCchHHHHHHHHHHH
Confidence 33 334555555544
No 295
>1twy_A ABC transporter, periplasmic substrate-binding PR; nysgxrc target, structural genomics, protei structure initiative, PSI; 1.65A {Vibrio cholerae o1 biovar eltor} SCOP: c.94.1.1
Probab=29.22 E-value=64 Score=28.66 Aligned_cols=36 Identities=14% Similarity=0.210 Sum_probs=22.5
Q ss_pred CCcEEEEEEEecCCccchhHHHHHHHHHHHHhcCCCCcEEEEEE
Q 008863 32 EEVTKIGAIVDANSQMGKQAITAMKIAVQNFNSDSRNHKLSLQI 75 (550)
Q Consensus 32 ~~~i~IG~i~~~~~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~ 75 (550)
.++++||+.... . .-+...+..+.+..|+.+|++..
T Consensus 27 ~g~l~Ig~~~~~-------~-~~l~~~l~~f~~~~P~i~v~i~~ 62 (290)
T 1twy_A 27 ASEITISGSTSV-------A-RIMDVLAEKYNQQHPETYVAVQG 62 (290)
T ss_dssp -CEEEEEECHHH-------H-HHHHHHHHHHHHHCTTCEEEEEE
T ss_pred CCCEEEecCcch-------H-HHHHHHHHHHHhhCCCceEEEEe
Confidence 468999975421 1 23455566677666888888754
No 296
>3brs_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; 2.00A {Clostridium phytofermentans}
Probab=29.01 E-value=3e+02 Score=24.18 Aligned_cols=120 Identities=15% Similarity=0.128 Sum_probs=66.4
Q ss_pred EEEEEEEecC-CccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhc-CCeEEEEcCCChHHHHH
Q 008863 35 TKIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINK-EKVKVIAGMETWEETAV 112 (550)
Q Consensus 35 i~IG~i~~~~-~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~-~~v~aiiG~~~s~~~~~ 112 (550)
=+|+++.... ......-..|++.++++. +..+.. ......+...+.+.+.+++.. ..+.+|+..... .+..
T Consensus 132 ~~i~~i~~~~~~~~~~~R~~gf~~~l~~~-----g~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~-~a~g 204 (289)
T 3brs_A 132 GKIGVISFVKNSKTAMDREEGLKIGLSDD-----SNKIEA-IYYCDSNYDKAYDGTVELLTKYPDISVMVGLNQY-SATG 204 (289)
T ss_dssp CEEEEEESCTTSHHHHHHHHHHHHHHGGG-----GGGEEE-EEECTTCHHHHHHHHHHHHHHCTTEEEEEESSHH-HHHH
T ss_pred ceEEEEECCCCCccHHHHHHHHHHHHHhC-----CCcEEe-eecCCCCHHHHHHHHHHHHHhCCCceEEEECCCc-chHH
Confidence 4788887543 223345567888887764 222322 223445667777788888864 468999975443 3333
Q ss_pred HHHhhccCC----ccEEeccCCCCCCcccCCCCCeE-EEEecCcHHhHHHHHHHHH
Q 008863 113 VAEIASRVQ----VPILSFAAPAVTPLSMSRRWPYL-IRMASNDSEQMKCIADLAR 163 (550)
Q Consensus 113 v~~~~~~~~----iP~is~~~~~~~~~~~~~~~~~~-~~~~p~~~~~~~al~~~l~ 163 (550)
+...+.+.+ +.++++... .........|.+ ..+..+...++...+++|.
T Consensus 205 ~~~al~~~G~~~di~vvg~d~~--~~~~~~~~~~~l~ttv~~~~~~~g~~a~~~l~ 258 (289)
T 3brs_A 205 AARAIKDMSLEAKVKLVCIDSS--MEQIQYLEEGIFEAMVVQKPFNIGYLGVEKAL 258 (289)
T ss_dssp HHHHHHHTTCTTTSEEEEEESC--SCC-----CCSCCEEEECCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCCEEEEEECCC--HHHHHHHHCCceEEEEecChHHHHHHHHHHHH
Confidence 444444443 678887765 211221111234 5566666677776666653
No 297
>3zy2_A Putative GDP-fucose protein O-fucosyltransferase; glycosyltransferase, GT-B, catalytic mechanism,; HET: GDP; 1.54A {Caenorhabditis elegans} PDB: 3zy3_A* 3zy4_A* 3zy5_A* 3zy6_A*
Probab=28.87 E-value=1.6e+02 Score=27.50 Aligned_cols=89 Identities=11% Similarity=0.090 Sum_probs=65.1
Q ss_pred ecCcHHhHHHHHHHHHHcCCeEEEEEEEcCCCCCcchhHHHHHHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHh
Q 008863 148 ASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKV 227 (550)
Q Consensus 148 ~p~~~~~~~al~~~l~~~~w~~v~ii~~~~~~g~~~~~~~~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i 227 (550)
.|+....++.+..+++..+-++|.|-+|.+. ..+.|++.+.+.+ +.++. +.+. .+++...
T Consensus 261 lPSle~I~rqIk~~vk~~~lksVFIATDa~~------~~~ELk~~L~~~~-v~vv~---~~pe----------~a~ID~~ 320 (362)
T 3zy2_A 261 SPSKQQILEQIVEKVGSIGAKSVFVASDKDH------MIDEINEALKPYE-IEAHR---QEPD----------DMYTSLA 320 (362)
T ss_dssp SCCHHHHHHHHHHHHHHHTCSEEEEEESSCC------CHHHHHHHHGGGT-CCEEC---CSSC----------CHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhcCCcEEEEecCCHH------HHHHHHHHhhccC-ceEEE---eCCc----------hhHHHHH
Confidence 4888889999999999889888888875433 3688888888777 66532 2221 3455555
Q ss_pred hcCCCeEEEEEcCCHHHHHHHHHHHHHcCC
Q 008863 228 QDKQSRVFIVLQASLDMTIHLFTEANRMGL 257 (550)
Q Consensus 228 ~~~~~~~ii~~~~~~~~~~~il~~a~~~g~ 257 (550)
--+.++.+|- .|.+.-...+.++-.-.|+
T Consensus 321 I~~~A~~FIG-N~~SSFSa~I~rERdi~G~ 349 (362)
T 3zy2_A 321 IMGRADLFVG-NCVSTFSHIVKRERDHAGQ 349 (362)
T ss_dssp HHHHSSEEEE-CTTCHHHHHHHHHHHHSSS
T ss_pred HHHhCCEeec-CccccccHHHHHHHHhcCC
Confidence 5568889998 8888888888777777774
No 298
>3un6_A Hypothetical protein saouhsc_00137; structural genomics, center for structural genomics of infec diseases, csgid; 2.01A {Staphylococcus aureus subsp}
Probab=28.71 E-value=26 Score=32.74 Aligned_cols=77 Identities=17% Similarity=0.185 Sum_probs=0.0
Q ss_pred cchhHHHHHHHHHHHHhccccccccC---CCCCCCcEEEEEEEecCCccchhHHHHHHHHHH---HHhcCCCCcEEEEEE
Q 008863 2 NRFFFLVLIIASELVFVSPGVESAST---NVNIEEVTKIGAIVDANSQMGKQAITAMKIAVQ---NFNSDSRNHKLSLQI 75 (550)
Q Consensus 2 ~r~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~i~IG~i~~~~~~~g~~~~~a~~~Av~---~iN~~~~~~~l~~~~ 75 (550)
+++.+++++++++++++|+.....+. ....+.+|+||..- ......+..|.+ .+... |+++++..
T Consensus 18 ~~~~~~~~~~~~~~lagC~~~~~~~~~~~~~~~~~~l~vg~~~-------~~~~~p~~~a~~l~g~~~~~--G~~Ve~~~ 88 (341)
T 3un6_A 18 MKRLSIIVIIGIFIITGCDWQRTSKERSKNAQNQQVIKIGYLP-------ITHSANLMMTKKLLSQYNHP--KYKLELVK 88 (341)
T ss_dssp ---------------------------------CCEEEEEECS-------SGGGHHHHHHHHHHHTSSSC--SSEEEEEE
T ss_pred HHHHHHHHHHHHHHHhhcCCCccCCCCCCCCCCCceEEEEEEe-------ccccHHHHHHHHhhChHHHc--CCcEEEEE
Q ss_pred ecCCCCHHHHHH
Q 008863 76 RDHNRDPFQAAT 87 (550)
Q Consensus 76 ~d~~~~~~~a~~ 87 (550)
..+..+...++.
T Consensus 89 ~~~~~~~~~al~ 100 (341)
T 3un6_A 89 FNNWPDLMDALN 100 (341)
T ss_dssp CSSHHHHHHHHH
T ss_pred cCCHHHHHHHHH
No 299
>2dri_A D-ribose-binding protein; sugar transport; HET: RIP; 1.60A {Escherichia coli} SCOP: c.93.1.1 PDB: 1urp_A* 1ba2_A 1dbp_A* 1drj_A* 1drk_A* 2gx6_A*
Probab=28.70 E-value=2.9e+02 Score=24.03 Aligned_cols=119 Identities=10% Similarity=0.063 Sum_probs=69.2
Q ss_pred EEEEEEEecC-CccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhc-CCeEEEEcCCChHHHHH
Q 008863 35 TKIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINK-EKVKVIAGMETWEETAV 112 (550)
Q Consensus 35 i~IG~i~~~~-~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~-~~v~aiiG~~~s~~~~~ 112 (550)
-+|+.+.... ......-..|++.|+++. |.++... .....+...+.+.+.+++.. ..+.||+...... +..
T Consensus 124 ~~I~~i~g~~~~~~~~~R~~Gf~~al~~~-----g~~~~~~-~~~~~~~~~~~~~~~~ll~~~~~~~ai~~~nD~~-A~g 196 (271)
T 2dri_A 124 AKVIELQGIAGTSAARERGEGFQQAVAAH-----KFNVLAS-QPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEM-ALG 196 (271)
T ss_dssp CEEEEEECCTTCHHHHHHHHHHHHHHHHH-----TCEEEEE-EECTTCHHHHHHHHHHHHHHCTTCCEEEESSHHH-HHH
T ss_pred CeEEEEECCCCCccHhHHHHHHHHHHhcC-----CCEEEEe-cCCCCCHHHHHHHHHHHHHhCCCccEEEECCCcH-HHH
Confidence 3788887443 222344568898888884 4444332 33445677777888888764 4688999765443 333
Q ss_pred HHHhhcc---CCccEEeccCCCCCCcccC--CCCCeEEEEecCcHHhHHHHHHHHH
Q 008863 113 VAEIASR---VQVPILSFAAPAVTPLSMS--RRWPYLIRMASNDSEQMKCIADLAR 163 (550)
Q Consensus 113 v~~~~~~---~~iP~is~~~~~~~~~~~~--~~~~~~~~~~p~~~~~~~al~~~l~ 163 (550)
+...+.. .++.++++... +.... ...|.+..+..+...+++..++++.
T Consensus 197 ~~~al~~~g~~dv~vvGfD~~---~~~~~~~~~~p~lttv~~~~~~~g~~a~~~l~ 249 (271)
T 2dri_A 197 ALRALQTAGKSDVMVVGFDGT---PDGEKAVNDGKLAATIAQLPDQIGAKGVETAD 249 (271)
T ss_dssp HHHHHHHHTCCSCEEEEEECC---HHHHHHHHTTSSCEEEECCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCcEEEEecCC---HHHHHHHHcCCcEEEEecCHHHHHHHHHHHHH
Confidence 3333333 35778877654 22111 0135555666666777777666653
No 300
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=28.60 E-value=1.9e+02 Score=21.84 Aligned_cols=58 Identities=14% Similarity=0.116 Sum_probs=37.7
Q ss_pred chhHHHHHHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcCCCeEEEEEcCC--HHHHHHHHHHHHHc
Q 008863 183 SGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQAS--LDMTIHLFTEANRM 255 (550)
Q Consensus 183 ~~~~~~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~~ii~~~~~--~~~~~~il~~a~~~ 255 (550)
......+...+.+.| ..+.. . .+....++.+++..+++|++ +.. ......+++++++.
T Consensus 16 ~~~~~~l~~~l~~~g-~~v~~---~----------~~~~~a~~~l~~~~~dlvi~-d~~l~~~~g~~~~~~l~~~ 75 (140)
T 3grc_A 16 PDIARLLNLMLEKGG-FDSDM---V----------HSAAQALEQVARRPYAAMTV-DLNLPDQDGVSLIRALRRD 75 (140)
T ss_dssp HHHHHHHHHHHHHTT-CEEEE---E----------CSHHHHHHHHHHSCCSEEEE-CSCCSSSCHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHCC-CeEEE---E----------CCHHHHHHHHHhCCCCEEEE-eCCCCCCCHHHHHHHHHhC
Confidence 345677888888888 76532 1 13345566667778999998 643 33456777777763
No 301
>2w37_A Ornithine carbamoyltransferase, catabolic; transcarbamylase, metal binding-site, hexamer, cytoplasm, arginine metabolism; 2.10A {Lactobacillus hilgardii}
Probab=28.29 E-value=3.7e+02 Score=25.13 Aligned_cols=130 Identities=12% Similarity=0.092 Sum_probs=74.9
Q ss_pred EEEEEEEecCCccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCC----CHHHHHHHHHHhhhcCCeEEEEcCCChHHH
Q 008863 35 TKIGAIVDANSQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNR----DPFQAATAAQELINKEKVKVIAGMETWEET 110 (550)
Q Consensus 35 i~IG~i~~~~~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~----~~~~a~~~~~~li~~~~v~aiiG~~~s~~~ 110 (550)
-.|+.+|...+ .+...+|+.|..++ ++..+.+...++.- .....++....+ . .+.++=++ ....
T Consensus 68 k~la~lF~e~S---TRTR~SFE~A~~~L----Gg~vi~l~~~~ss~~kgEsl~DTarvLs~~-~--D~IviR~~-~~~~- 135 (359)
T 2w37_A 68 KNIALLFEKSS---TRTRSAFTTASIDL----GAHPEYLGQNDIQLGKKESTSDTAKVLGSM-F--DGIEFRGF-KQSD- 135 (359)
T ss_dssp CEEEEEESSCC---HHHHHHHHHHHHHT----TCEEEEECTTTCCTTTSSCHHHHHHHHHHH-C--SEEEEESS-CHHH-
T ss_pred CEEEEEecCCC---ccHHHHHHHHHHHc----CCeEEEeCCccccCCCCcCHHHHHHHHHHh-c--CEEEEecC-ChHH-
Confidence 46888887663 68889999999998 45555553333222 222333333333 1 33344343 3333
Q ss_pred HHHHHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHH---HHcC---CeEEEEEEEcCCCCCcch
Q 008863 111 AVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLA---RKYN---WRRVAAIYEDNVYGGDSG 184 (550)
Q Consensus 111 ~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l---~~~~---w~~v~ii~~~~~~g~~~~ 184 (550)
+..++...++|+|..... .. . -.++++|++ +++| -.+++++.+. . ..
T Consensus 136 --~~~lA~~s~vPVINa~~~--------~~-------H-----PtQaLaDl~Ti~E~~g~l~gl~va~vGD~--~---~r 188 (359)
T 2w37_A 136 --AEILARDSGVPVWNGLTD--------EW-------H-----PTQMLADFMTVKENFGKLQGLTLTFMGDG--R---NN 188 (359)
T ss_dssp --HHHHHHHSSSCEEEEECS--------SC-------C-----HHHHHHHHHHHHHHHSCCTTCEEEEESCT--T---SH
T ss_pred --HHHHHHhCCCCEEcCCCC--------CC-------C-----ccHHHHHHHHHHHHhCCcCCeEEEEECCC--c---cc
Confidence 444556668999995422 11 1 246777775 3444 2567766542 2 34
Q ss_pred hHHHHHHHHhcCCCeEEEEE
Q 008863 185 KLALLAEALQNVSSSEIQSR 204 (550)
Q Consensus 185 ~~~~l~~~l~~~g~~~v~~~ 204 (550)
.+..+...+...| +.+...
T Consensus 189 va~Sl~~~~~~lG-~~v~~~ 207 (359)
T 2w37_A 189 VANSLLVTGAILG-VNIHIV 207 (359)
T ss_dssp HHHHHHHHHHHHT-CEEEEE
T ss_pred hHHHHHHHHHHcC-CEEEEE
Confidence 6777888888888 776543
No 302
>2bon_A Lipid kinase; DAG kinase, transferase; 1.90A {Escherichia coli} SCOP: e.52.1.2 PDB: 2jgr_A 2p1r_A
Probab=28.11 E-value=1.7e+02 Score=27.02 Aligned_cols=76 Identities=9% Similarity=-0.035 Sum_probs=47.8
Q ss_pred eEEEEEEEcCCCCCcchhHHHHHHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcCCCeEEEEEcCCHHHHHH
Q 008863 168 RRVAAIYEDNVYGGDSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIH 247 (550)
Q Consensus 168 ~~v~ii~~~~~~g~~~~~~~~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~~ii~~~~~~~~~~~ 247 (550)
+++.+|+....-. ....+.+.+.+.+.| +.+....+-.. .+.....++....+.|.||+ .+.......
T Consensus 30 ~~~~vi~Np~sg~--~~~~~~i~~~l~~~g-~~~~~~~t~~~--------~~~~~~~~~~~~~~~d~vvv-~GGDGTl~~ 97 (332)
T 2bon_A 30 PASLLILNGKSTD--NLPLREAIMLLREEG-MTIHVRVTWEK--------GDAARYVEEARKFGVATVIA-GGGDGTINE 97 (332)
T ss_dssp CCEEEEECSSSTT--CHHHHHHHHHHHTTT-CCEEEEECCST--------THHHHHHHHHHHHTCSEEEE-EESHHHHHH
T ss_pred ceEEEEECCCCCC--CchHHHHHHHHHHcC-CcEEEEEecCc--------chHHHHHHHHHhcCCCEEEE-EccchHHHH
Confidence 5788888654422 245567888888888 77654432211 23344445554456788888 777777777
Q ss_pred HHHHHHHc
Q 008863 248 LFTEANRM 255 (550)
Q Consensus 248 il~~a~~~ 255 (550)
++..+.+.
T Consensus 98 v~~~l~~~ 105 (332)
T 2bon_A 98 VSTALIQC 105 (332)
T ss_dssp HHHHHHHC
T ss_pred HHHHHhhc
Confidence 88877753
No 303
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=28.02 E-value=2.2e+02 Score=22.27 Aligned_cols=60 Identities=7% Similarity=0.015 Sum_probs=34.7
Q ss_pred chhHHHHHHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcC--CCeEEEEEcCC--HHHHHHHHHHHHHcC
Q 008863 183 SGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDK--QSRVFIVLQAS--LDMTIHLFTEANRMG 256 (550)
Q Consensus 183 ~~~~~~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~--~~~~ii~~~~~--~~~~~~il~~a~~~g 256 (550)
......+...+.+.| ..+.... .+....+..+++. .+++|++ +.. ......+++++++..
T Consensus 46 ~~~~~~l~~~L~~~g-~~v~~~~------------~~~~~al~~l~~~~~~~dliil-D~~l~~~~g~~~~~~lr~~~ 109 (157)
T 3hzh_A 46 VFTVKQLTQIFTSEG-FNIIDTA------------ADGEEAVIKYKNHYPNIDIVTL-XITMPKMDGITCLSNIMEFD 109 (157)
T ss_dssp HHHHHHHHHHHHHTT-CEEEEEE------------SSHHHHHHHHHHHGGGCCEEEE-CSSCSSSCHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhCC-CeEEEEE------------CCHHHHHHHHHhcCCCCCEEEE-eccCCCccHHHHHHHHHhhC
Confidence 345677777787777 6654221 1223344445544 5788888 543 234556677777655
No 304
>2g2c_A Putative molybdenum cofactor biosynthesis protein; structural genomics, PSI, protein structure initiative; 1.50A {Corynebacterium diphtheriae} SCOP: c.57.1.1
Probab=27.98 E-value=1.8e+02 Score=23.72 Aligned_cols=64 Identities=25% Similarity=0.339 Sum_probs=38.0
Q ss_pred EEEEEEEcCC--CC-CcchhHHHHHHH----HhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcCCCeEEEEEcC
Q 008863 169 RVAAIYEDNV--YG-GDSGKLALLAEA----LQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQA 240 (550)
Q Consensus 169 ~v~ii~~~~~--~g-~~~~~~~~l~~~----l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~~ii~~~~ 240 (550)
++++|...|+ .| -.......+.+. +.+.| .++.....++. +.+.+...+++..+.++|+||. .+
T Consensus 7 ~v~Ii~~GdEl~~G~i~D~n~~~l~~~~~~~l~~~G-~~v~~~~iv~D------d~~~I~~~l~~a~~~~~DlVit-tG 77 (167)
T 2g2c_A 7 KSAIIVVSDRISTGTRENKALPLLQRLMSDELQDYS-YELISEVVVPE------GYDTVVEAIATALKQGARFIIT-AG 77 (167)
T ss_dssp EEEEEEECHHHHHTSSCCCHHHHHHHHHCC----CE-EEEEEEEEECS------SHHHHHHHHHHHHHTTCSEEEE-ES
T ss_pred EEEEEEECCcccCCceeccHHHHHHHhHHhHHHHCC-CEEeEEEEeCC------CHHHHHHHHHHHHhCCCCEEEE-CC
Confidence 5666665432 00 002345667778 88888 88877666654 4467777887776656899988 44
No 305
>3okf_A 3-dehydroquinate synthase; structural genomics, center for structural genomics of infec diseases, csgid, NAD, lyase; HET: NAD; 2.50A {Vibrio cholerae o1 biovar eltor}
Probab=27.96 E-value=2.2e+02 Score=27.04 Aligned_cols=113 Identities=14% Similarity=0.076 Sum_probs=64.8
Q ss_pred CeEEEEecCcHHhHHHHHHHHHHcCCeEEEEEEEcCCCCCcchhHHHHHHHHhcCCCeEEEEEeecCCCCCCCCChHHHH
Q 008863 142 PYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVR 221 (550)
Q Consensus 142 ~~~~~~~p~~~~~~~al~~~l~~~~w~~v~ii~~~~~~g~~~~~~~~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~ 221 (550)
+|-+...+..... +. +++.++.+++.+|++...+ ....+.+.+.+++.| +.+.... ++.... ....+.+.
T Consensus 41 ~y~I~~G~g~l~~---l~-~l~~~~~~rvlIVtd~~v~---~~~~~~v~~~L~~~g-~~~~~~~-~~~gE~-~kt~~~v~ 110 (390)
T 3okf_A 41 SYPISIGAGLFAN---PA-LLSLSAKQKVVIVTNHTVA---PLYAPAIISLLDHIG-CQHALLE-LPDGEQ-YKTLETFN 110 (390)
T ss_dssp CEEEEEETTGGGC---GG-GGCCCTTCEEEEEEETTTH---HHHHHHHHHHHHHHT-CEEEEEE-ECSSGG-GCBHHHHH
T ss_pred CCCEEEeCCHHHh---HH-HHHhcCCCEEEEEECCcHH---HHHHHHHHHHHHHcC-CeEEEEE-ECCCcC-CchHHHHH
Confidence 5656666654332 22 4455577999999987764 346788888999888 7765332 332210 01345677
Q ss_pred HHHHHhhcCCC---eEEEEEcCCH--HHHHHHHHHHHHcCCCCCCEEEEEec
Q 008863 222 GELKKVQDKQS---RVFIVLQASL--DMTIHLFTEANRMGLVGKDSVWIVTN 268 (550)
Q Consensus 222 ~~l~~i~~~~~---~~ii~~~~~~--~~~~~il~~a~~~g~~~~~~~~i~~~ 268 (550)
..++.+++.+. +.||- .+.+ -++..++...... +-.++-|.|.
T Consensus 111 ~~~~~l~~~~~~R~d~IIA-vGGGsv~D~ak~~Aa~~~r---gip~I~IPTT 158 (390)
T 3okf_A 111 TVMSFLLEHNYSRDVVVIA-LGGGVIGDLVGFAAACYQR---GVDFIQIPTT 158 (390)
T ss_dssp HHHHHHHHTTCCTTCEEEE-EESHHHHHHHHHHHHHBTT---CCEEEEEECS
T ss_pred HHHHHHHhcCCCcCcEEEE-ECCcHHhhHHHHHHHHhcC---CCCEEEeCCC
Confidence 77777777665 56665 3333 3444444433333 3335555554
No 306
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=27.69 E-value=75 Score=28.46 Aligned_cols=80 Identities=9% Similarity=-0.006 Sum_probs=50.3
Q ss_pred CCeEEEEEEEcC--CCCCcchhHHHHHHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcCCCeEEEEEcCCHH
Q 008863 166 NWRRVAAIYEDN--VYGGDSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLD 243 (550)
Q Consensus 166 ~w~~v~ii~~~~--~~g~~~~~~~~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~~ii~~~~~~~ 243 (550)
+-++|+++..+. .|. ..+.+.+++.+.+.| ..+..... .. +.......++.+.+.+.+.||+ .....
T Consensus 7 ~~~~Igvv~~~~~~~~~--~~~~~gi~~~a~~~g-~~~~~~~~-~~------~~~~~~~~~~~l~~~~vdgiIi-~~~~~ 75 (291)
T 3egc_A 7 RSNVVGLIVSDIENVFF--AEVASGVESEARHKG-YSVLLANT-AE------DIVREREAVGQFFERRVDGLIL-APSEG 75 (291)
T ss_dssp CCCEEEEEESCTTSHHH--HHHHHHHHHHHHHTT-CEEEEEEC-TT------CHHHHHHHHHHHHHTTCSEEEE-CCCSS
T ss_pred CCcEEEEEECCCcchHH--HHHHHHHHHHHHHCC-CEEEEEeC-CC------CHHHHHHHHHHHHHCCCCEEEE-eCCCC
Confidence 446788888654 344 667788888888888 77764331 11 2344556777787788898888 54432
Q ss_pred HHHHHHHHHHHcCC
Q 008863 244 MTIHLFTEANRMGL 257 (550)
Q Consensus 244 ~~~~il~~a~~~g~ 257 (550)
....++.+.+.|+
T Consensus 76 -~~~~~~~~~~~~i 88 (291)
T 3egc_A 76 -EHDYLRTELPKTF 88 (291)
T ss_dssp -CCHHHHHSSCTTS
T ss_pred -ChHHHHHhhccCC
Confidence 3345555555554
No 307
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A 3oqo_A* 3oqm_A* 3oqn_A*
Probab=27.19 E-value=2.5e+02 Score=25.48 Aligned_cols=118 Identities=17% Similarity=0.086 Sum_probs=66.0
Q ss_pred EEEEEEecC-C-ccchhHHHHHHHHHHHHhcCCCCcEEEE-EEecCCCCHHHHHHHHHHhhhc-CCeEEEEcCCChHHHH
Q 008863 36 KIGAIVDAN-S-QMGKQAITAMKIAVQNFNSDSRNHKLSL-QIRDHNRDPFQAATAAQELINK-EKVKVIAGMETWEETA 111 (550)
Q Consensus 36 ~IG~i~~~~-~-~~g~~~~~a~~~Av~~iN~~~~~~~l~~-~~~d~~~~~~~a~~~~~~li~~-~~v~aiiG~~~s~~~~ 111 (550)
+||++.... . .....-..|++.|+++.+ .++.. .+.....+...+.+.+.+++.. ..+.+|+.... ..+.
T Consensus 179 ~I~~i~~~~~~~~~~~~R~~Gf~~al~~~g-----~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ai~~~nd-~~A~ 252 (332)
T 2hsg_A 179 NIAFVSGTLEEPINHAKKVKGYKRALTESG-----LPVRDSYIVEGDYTYDSGIEAVEKLLEEDEKPTAIFVGTD-EMAL 252 (332)
T ss_dssp CEEEEESCTTSHHHHTTHHHHHHHHHHTTT-----CCCCGGGEEECCSSHHHHHHHHHHHHHSSSCCSEEEESSH-HHHH
T ss_pred EEEEEeCCcccCccHHHHHHHHHHHHHHcC-----CCCChheEEeCCCCHHHHHHHHHHHHcCCCCCeEEEECCh-HHHH
Confidence 577776543 2 223345678888877643 22110 0122335666777778888864 36889997533 3344
Q ss_pred HHHHhhccCCc--c----EEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHH
Q 008863 112 VVAEIASRVQV--P----ILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLAR 163 (550)
Q Consensus 112 ~v~~~~~~~~i--P----~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~ 163 (550)
.+...+.+.++ | ++++... +... ...|.+-.+..+...++...+++|.
T Consensus 253 g~~~al~~~G~~vP~disvvg~D~~---~~~~-~~~p~lttv~~~~~~~g~~a~~~l~ 306 (332)
T 2hsg_A 253 GVIHGAQDRGLNVPNDLEIIGFDNT---RLST-MVRPQLTSVVQPMYDIGAVAMRLLT 306 (332)
T ss_dssp HHHHHHHHTTCCHHHHCEEEEESCC---GGGG-SSSSCCEEEECCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCCeEEEEECCh---HHHh-ccCCceeEEECCHHHHHHHHHHHHH
Confidence 44455555443 4 6666544 2221 2224455667777778777777664
No 308
>1f2v_A COBH, precorrin-8X methylmutase; alpha-beta WIND, doubly wound sheet, isomerase; 2.10A {Pseudomonas denitrificans} SCOP: c.23.17.1 PDB: 1i1h_A*
Probab=27.05 E-value=63 Score=27.80 Aligned_cols=71 Identities=14% Similarity=0.114 Sum_probs=43.7
Q ss_pred hHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcC--CeEEEEc-CCChHHHHHHHHhhccC--CccE
Q 008863 50 QAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKE--KVKVIAG-METWEETAVVAEIASRV--QVPI 124 (550)
Q Consensus 50 ~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~--~v~aiiG-~~~s~~~~~v~~~~~~~--~iP~ 124 (550)
+...|++.|.+++. + . +... +|..+|+-..++++.+. +..+||| |...-.+......+... ++|+
T Consensus 125 Rsaaa~~~~~~~~~----~-a--IvaI---GNAPTAL~~Lleli~~g~~~PalVIG~PVGFVgaaESKe~L~~~~~~vP~ 194 (219)
T 1f2v_A 125 RSAAALKLWSERLA----G-S--VVAI---GNAPTALFFLLEMLRDGAPKPAAILGMPVGFVGAAESKDALAENSYGVPF 194 (219)
T ss_dssp HHHHGGGGGHHHHT----T-C--EEEE---CSCHHHHHHHHHHHHTTCCCCSEEEECCCSSSSHHHHHHHHHHCCTTCCE
T ss_pred HHHHHHHHHHHHcC----C-c--EEEE---eCcHHHHHHHHHHHHcCCCCCCEEEEeCCCccCHHHHHHHHHhCCCCCCE
Confidence 55677888887764 2 1 2222 56678999999999753 5678888 54333232222333344 7999
Q ss_pred EeccCC
Q 008863 125 LSFAAP 130 (550)
Q Consensus 125 is~~~~ 130 (550)
|..-..
T Consensus 195 I~~~Gr 200 (219)
T 1f2v_A 195 AIVRGR 200 (219)
T ss_dssp EEECTT
T ss_pred EEEeCC
Confidence 986554
No 309
>3to5_A CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, phosphorylation, motor AC signaling protein; 1.65A {Vibrio cholerae}
Probab=26.86 E-value=1.9e+02 Score=22.46 Aligned_cols=59 Identities=7% Similarity=0.003 Sum_probs=34.8
Q ss_pred hhHHHHHHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcCCCeEEEEEcCC--HHHHHHHHHHHHHcC
Q 008863 184 GKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQAS--LDMTIHLFTEANRMG 256 (550)
Q Consensus 184 ~~~~~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~~ii~~~~~--~~~~~~il~~a~~~g 256 (550)
.....++..+++.| ..++... .+-...+..+++..+|+|++ +.. .-+...++++.++..
T Consensus 23 ~~r~~l~~~L~~~G-~~~v~~a------------~~g~~al~~~~~~~~Dlill-D~~MP~mdG~el~~~ir~~~ 83 (134)
T 3to5_A 23 TMRRIVKNLLRDLG-FNNTQEA------------DDGLTALPMLKKGDFDFVVT-DWNMPGMQGIDLLKNIRADE 83 (134)
T ss_dssp HHHHHHHHHHHHTT-CCCEEEE------------SSHHHHHHHHHHHCCSEEEE-ESCCSSSCHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHcC-CcEEEEE------------CCHHHHHHHHHhCCCCEEEE-cCCCCCCCHHHHHHHHHhCC
Confidence 35677788888888 6432211 12234455566668888888 543 334566777776644
No 310
>2dgd_A 223AA long hypothetical arylmalonate decarboxylas; octamer, alpha/beta structure, lyase; 2.90A {Sulfolobus tokodaii}
Probab=26.75 E-value=2.3e+02 Score=24.18 Aligned_cols=70 Identities=17% Similarity=0.165 Sum_probs=41.0
Q ss_pred cCCe-EEEEEEEcCCCCCcchhHHHHHHHHhcCCCeEEEEEeec-CCCCCCCCChHH----HHHHHHHhhcCCCeEEEEE
Q 008863 165 YNWR-RVAAIYEDNVYGGDSGKLALLAEALQNVSSSEIQSRLVL-PPISSISDPKEA----VRGELKKVQDKQSRVFIVL 238 (550)
Q Consensus 165 ~~w~-~v~ii~~~~~~g~~~~~~~~l~~~l~~~g~~~v~~~~~~-~~~~~~~~~~~d----~~~~l~~i~~~~~~~ii~~ 238 (550)
+||+ ++++|..+.+ ......+.+.+.. + +.+... .+ +........-.+ +.+..+++.+. +|+|++
T Consensus 2 ~~~~~~IG~i~p~s~----~~~e~~~~~~~~~-~-v~~~~~-r~~~~~~~~~~~~~~~~~~l~~~a~~L~~~-~d~ivi- 72 (223)
T 2dgd_A 2 PGGRGRIGVILPANN----AGMEYDLWKMAPE-G-VSIHST-RMKPTKGCEPENVEEFEKELKYSYSLLAEV-SDIIIY- 72 (223)
T ss_dssp CCSSEEEEEEEETTC----CSHHHHHHHHCCT-T-EEEEEE-EECCCSSSSCSCHHHHHHHHHHHHHHHTTT-CSEEEE-
T ss_pred CCCCceEEEEECCCc----ccHHHHHHHHccC-C-eEEEEE-eeecCCCCCHHHHHHHHHHHHHHHHHhhcc-CCEEEE-
Confidence 6888 9999998765 3355656666543 5 555333 23 222111112122 34445677777 999999
Q ss_pred cCCHH
Q 008863 239 QASLD 243 (550)
Q Consensus 239 ~~~~~ 243 (550)
.|+..
T Consensus 73 ~Cnt~ 77 (223)
T 2dgd_A 73 GRTYG 77 (223)
T ss_dssp CCCTT
T ss_pred cCCHH
Confidence 88755
No 311
>1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8
Probab=26.70 E-value=62 Score=25.51 Aligned_cols=35 Identities=14% Similarity=0.340 Sum_probs=28.1
Q ss_pred CCeEEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEEecc
Q 008863 231 QSRVFIVLQASLDMTIHLFTEANRMGLVGKDSVWIVTNT 269 (550)
Q Consensus 231 ~~~~ii~~~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~ 269 (550)
.+|++++ +..++....++.++.+.|.. -+|+.+..
T Consensus 69 ~vDlvii-~vp~~~v~~v~~~~~~~g~~---~i~~~~~~ 103 (138)
T 1y81_A 69 DVDVIVF-VVPPKVGLQVAKEAVEAGFK---KLWFQPGA 103 (138)
T ss_dssp TCCEEEE-CSCHHHHHHHHHHHHHTTCC---EEEECTTS
T ss_pred CCCEEEE-EeCHHHHHHHHHHHHHcCCC---EEEEcCcc
Confidence 6899999 88898999999998888763 37886644
No 312
>3bil_A Probable LACI-family transcriptional regulator; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum atcc 13032}
Probab=26.60 E-value=3.7e+02 Score=24.57 Aligned_cols=117 Identities=15% Similarity=0.135 Sum_probs=66.6
Q ss_pred EEEEEEecC-CccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEcCCChHHHHHHH
Q 008863 36 KIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEETAVVA 114 (550)
Q Consensus 36 ~IG~i~~~~-~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~~~~~v~ 114 (550)
+||++.... ......-..|++.|+++.+- ..+++ .....+...+.+.+.+++....+ ||+.... ..+..+.
T Consensus 186 ~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~-----~~~~v-~~~~~~~~~~~~~~~~ll~~~~~-ai~~~nD-~~A~g~~ 257 (348)
T 3bil_A 186 PIGYLSGPMDTSTGRERLEDFKAACANSKI-----GEQLV-FLGGYEQSVGFEGATKLLDQGAK-TLFAGDS-MMTIGVI 257 (348)
T ss_dssp SEEEECCCTTSHHHHHHHHHHHHHHHHTTC-----CCCEE-ECCCSSHHHHHHHHHHHHHTTCS-EEEESSH-HHHHHHH
T ss_pred eEEEEeCCCCCccHHHHHHHHHHHHHHcCc-----CccEE-EcCCCCHHHHHHHHHHHHcCCCC-EEEEcCh-HHHHHHH
Confidence 567776543 22234556788888887532 22222 23345666777888888875347 8887533 3333444
Q ss_pred HhhccCC--cc----EEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHH
Q 008863 115 EIASRVQ--VP----ILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARK 164 (550)
Q Consensus 115 ~~~~~~~--iP----~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~ 164 (550)
..+...+ || ++++... +... ...|.+-.+..+...++...+++|..
T Consensus 258 ~al~~~G~~vP~disvvG~D~~---~~~~-~~~p~lttv~~~~~~~g~~Av~~l~~ 309 (348)
T 3bil_A 258 EACHKAGLVIGKDVSVIGFDTH---PLFA-LQPHPLTVIDQNVEQLAQRAVSILTE 309 (348)
T ss_dssp HHHHHTTCCBTTTBEEEEESCC---GGGG-GSSSCCCEEECCHHHHHHHHHHHHHC
T ss_pred HHHHHcCCCCCCCeEEEEeCCc---HHHH-hcCCCceEEEcCHHHHHHHHHHHHHH
Confidence 4444443 34 6776654 2221 12244556667777888888887754
No 313
>1nrz_A PTS system, sorbose-specific IIB component; beta sheet core, flanking helices, right handed beta-alpha-B crossover, transferase; 1.75A {Klebsiella pneumoniae} SCOP: c.38.1.1
Probab=26.52 E-value=2e+02 Score=23.44 Aligned_cols=80 Identities=10% Similarity=0.032 Sum_probs=54.7
Q ss_pred hHHHHHHHHHHcCCeEEEEEEEcCCCCCcchhHHHHHHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcCCCe
Q 008863 154 QMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSR 233 (550)
Q Consensus 154 ~~~al~~~l~~~~w~~v~ii~~~~~~g~~~~~~~~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~ 233 (550)
.++....|.++++.+++.++-+.-.- ..+.+.+-....-.| +++.... .++....+++-+..+.+
T Consensus 14 HGQV~t~W~k~~~~~~IiVvnD~vA~---D~~~k~~lk~a~P~g-vk~~i~s-----------ve~ai~~~~~~~~~~~~ 78 (164)
T 1nrz_A 14 HGQVTTVWSKVANAQRIIICNDDVFN---DEVRRTLLRQAAPPG-MKVNVVS-----------LEKAVAVYHNPQYQDET 78 (164)
T ss_dssp CHHHHHHHHHHHTCSEEEEECHHHHT---CHHHHHHHHHTCCTT-CEEEEEC-----------HHHHHHHHTCGGGTTCE
T ss_pred chhheeeeccccCCCEEEEeCccccC---CHHHHHHHHhcCCCC-CeEEEEE-----------HHHHHHHHhcccCCCce
Confidence 46777889999999999887765432 456666666666667 7765421 24555555554445778
Q ss_pred EEEEEcCCHHHHHHHH
Q 008863 234 VFIVLQASLDMTIHLF 249 (550)
Q Consensus 234 ~ii~~~~~~~~~~~il 249 (550)
++++ .-++.++..++
T Consensus 79 v~ll-~k~p~d~~~lv 93 (164)
T 1nrz_A 79 VFYL-FTNPHDVLTMV 93 (164)
T ss_dssp EEEE-ESSHHHHHHHH
T ss_pred EEEE-ECCHHHHHHHH
Confidence 8888 88998887764
No 314
>1f3k_A Omega-conotoxin txvii; cystine knot motif, triple-stranded antiparallel beta-sheet, L-type calcium channel blocker; NMR {Synthetic} SCOP: g.3.6.1
Probab=26.43 E-value=14 Score=19.02 Aligned_cols=9 Identities=11% Similarity=0.032 Sum_probs=7.0
Q ss_pred CcccccchH
Q 008863 484 NLRYDGFSI 492 (550)
Q Consensus 484 ~~~~~Gfci 492 (550)
-+|+.|+|+
T Consensus 13 qnCC~G~C~ 21 (26)
T 1f3k_A 13 LDCCTGICL 21 (26)
T ss_dssp CCSTTSCCS
T ss_pred ccccccEEE
Confidence 348999996
No 315
>3tsm_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, ssgcid, seattle structural GE center for infectious disease, lyase; 2.15A {Brucella melitensis} SCOP: c.1.2.0
Probab=26.29 E-value=3.5e+02 Score=24.15 Aligned_cols=87 Identities=13% Similarity=0.116 Sum_probs=58.2
Q ss_pred HHHHHHHHHcCCeEEEEEEEcCCCCCcchhHHHHHHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcCCCeEE
Q 008863 156 KCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVF 235 (550)
Q Consensus 156 ~al~~~l~~~~w~~v~ii~~~~~~g~~~~~~~~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~~i 235 (550)
..++......|-..+.++.+..-|+ +..+.++..-+..+ +.|.....+. +.+ ++.+.+..++|.|
T Consensus 82 ~~~A~~y~~~GA~~IsVltd~~~f~---Gs~~~L~~ir~~v~-lPVl~Kdfi~---------d~~--qi~ea~~~GAD~V 146 (272)
T 3tsm_A 82 PALAKAYEEGGAACLSVLTDTPSFQ---GAPEFLTAARQACS-LPALRKDFLF---------DPY--QVYEARSWGADCI 146 (272)
T ss_dssp HHHHHHHHHTTCSEEEEECCSTTTC---CCHHHHHHHHHTSS-SCEEEESCCC---------STH--HHHHHHHTTCSEE
T ss_pred HHHHHHHHHCCCCEEEEeccccccC---CCHHHHHHHHHhcC-CCEEECCccC---------CHH--HHHHHHHcCCCEE
Confidence 4566677778999999999776664 23455555545555 5554333221 111 4667778899999
Q ss_pred EEEcC---CHHHHHHHHHHHHHcCCC
Q 008863 236 IVLQA---SLDMTIHLFTEANRMGLV 258 (550)
Q Consensus 236 i~~~~---~~~~~~~il~~a~~~g~~ 258 (550)
++ .+ +...+..++..++++||.
T Consensus 147 lL-i~a~L~~~~l~~l~~~a~~lGl~ 171 (272)
T 3tsm_A 147 LI-IMASVDDDLAKELEDTAFALGMD 171 (272)
T ss_dssp EE-ETTTSCHHHHHHHHHHHHHTTCE
T ss_pred EE-cccccCHHHHHHHHHHHHHcCCe
Confidence 88 43 446788999999999984
No 316
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=26.09 E-value=2e+02 Score=21.23 Aligned_cols=59 Identities=7% Similarity=0.058 Sum_probs=40.0
Q ss_pred chhHHHHHHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcCCCeEEEEEcCC--HHHHHHHHHHHHHcC
Q 008863 183 SGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQAS--LDMTIHLFTEANRMG 256 (550)
Q Consensus 183 ~~~~~~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~~ii~~~~~--~~~~~~il~~a~~~g 256 (550)
......+...+.+.| ..+... .+....++.+.+..+++|++ +.. ......+++++++..
T Consensus 13 ~~~~~~l~~~L~~~g-~~v~~~-------------~~~~~a~~~l~~~~~dlii~-D~~l~~~~g~~~~~~l~~~~ 73 (127)
T 3i42_A 13 QAAAETFKELLEMLG-FQADYV-------------MSGTDALHAMSTRGYDAVFI-DLNLPDTSGLALVKQLRALP 73 (127)
T ss_dssp HHHHHHHHHHHHHTT-EEEEEE-------------SSHHHHHHHHHHSCCSEEEE-ESBCSSSBHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHcC-CCEEEE-------------CCHHHHHHHHHhcCCCEEEE-eCCCCCCCHHHHHHHHHhhh
Confidence 345788888899888 755321 13345566666778999999 643 345677888888863
No 317
>1ryo_A Serotransferrin; iron transport, metal transport; 1.20A {Homo sapiens} SCOP: c.94.1.2 PDB: 1bp5_A 1btj_A 1n84_A 1oqg_A 2o84_X 1fqf_A 1fqe_A 1oqh_A 2o7u_B 1jqf_A 1n7x_A 3fgs_A 1a8e_A 1a8f_A 1suv_C 1dtg_A 1d3k_A 1d4n_A 1n7w_A 1b3e_A ...
Probab=26.00 E-value=77 Score=29.42 Aligned_cols=43 Identities=12% Similarity=-0.032 Sum_probs=32.7
Q ss_pred chHHHHHHHHHhC---CCCCCeEEEecCCChHHHHHhhhcccccEEeec
Q 008863 490 FSIELFRLVVDHL---NYDLPYEFVPHDGVYDDLINGVYDKVNYFNYHD 535 (550)
Q Consensus 490 fciDll~~la~~l---~f~~~~~~~~~~g~w~Gmi~el~~~~ad~a~~~ 535 (550)
-|-+|.+.+...+ +-. ++++..+ .++++|..+.+|+||++..+
T Consensus 18 KC~~l~~~~~~~~~~~~~~--vecv~~~-dy~~ci~ai~~g~aD~~~l~ 63 (327)
T 1ryo_A 18 KCQSFRDHMKSVIPSDGPS--VACVKKA-SYLDCIRAIAANEADAVTLD 63 (327)
T ss_dssp HHHHHHHHHHHHSCTTSCE--EEEEEES-SHHHHHHHHHTTSCCBEEEC
T ss_pred HHHHHHHHHhhccccCCCc--eEEEecC-CHHHHHHHHHcCCCcEEEeC
Confidence 3667777775555 445 6676654 79999999999999999864
No 318
>2hzl_A Trap-T family sorbitol/mannitol transporter, periplasmic binding protein, SMOM; trap transporter, periplasmic subunit, ligand binding; 1.40A {Rhodobacter sphaeroides 2} PDB: 2hzk_A
Probab=25.92 E-value=40 Score=31.93 Aligned_cols=84 Identities=11% Similarity=0.096 Sum_probs=0.0
Q ss_pred CcchhHHHHHHHHHHHHhccccccccCCCCC--CCcEEEEEEEecC-CccchhHHHHHHHHHHHHhcCC-CCcEEEEEEe
Q 008863 1 MNRFFFLVLIIASELVFVSPGVESASTNVNI--EEVTKIGAIVDAN-SQMGKQAITAMKIAVQNFNSDS-RNHKLSLQIR 76 (550)
Q Consensus 1 M~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~IG~i~~~~-~~~g~~~~~a~~~Av~~iN~~~-~~~~l~~~~~ 76 (550)
|+||.++...+++++++++..+++.++ . ..++++|...|.+ . ....+++...+.+++.. +.+++++..-
T Consensus 1 m~rr~~~~~~~~~~~~~~~~~~~a~a~---~~~~~~l~~~~~~~~~~~----~~~~~~~~fa~~v~e~s~G~v~i~~~~~ 73 (365)
T 2hzl_A 1 MDRRSFITKAAVGGAAASALAAPALAQ---SAPKVTWRLASSFPKSLD----TIFGGAEVLSKMLSEATDGNFQIQVFSA 73 (365)
T ss_dssp ----------------------------------CEEEEEESSCTTCT----TTTHHHHHHHHHHHHHTTTSSEEEEECT
T ss_pred CcHHHHHHHHHHHHHHHHhhccchhhc---cCCceEEEEeccCCCCCC----chhHHHHHHHHHHHHhcCCeEEEEEecC
Q ss_pred cCCCCHHHHHHHHHH
Q 008863 77 DHNRDPFQAATAAQE 91 (550)
Q Consensus 77 d~~~~~~~a~~~~~~ 91 (550)
..-++....++.+..
T Consensus 74 g~Lg~~~~~~eav~~ 88 (365)
T 2hzl_A 74 GELVPGLQAADAVTE 88 (365)
T ss_dssp TTSSCGGGHHHHHHT
T ss_pred CcccCHHHHHHHHHc
No 319
>3e61_A Putative transcriptional repressor of ribose OPER; structural genomics, DNA-binding, transcripti regulation, PSI-2; 2.00A {Staphylococcus saprophyticus subsp}
Probab=25.57 E-value=1.5e+02 Score=25.96 Aligned_cols=78 Identities=6% Similarity=-0.034 Sum_probs=49.5
Q ss_pred CCeEEEEEEEcC--CCCCcchhHHHHHHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcCCCeEEEEEcCCHH
Q 008863 166 NWRRVAAIYEDN--VYGGDSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLD 243 (550)
Q Consensus 166 ~w~~v~ii~~~~--~~g~~~~~~~~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~~ii~~~~~~~ 243 (550)
+-+.|+++..+. .|. ....+.+.+.+.+.| ..+..... .. +.......++.+...+.+.||+ ....
T Consensus 7 ~~~~Ig~i~~~~~~~~~--~~~~~gi~~~~~~~g-~~~~~~~~-~~------~~~~~~~~~~~l~~~~~dgiIi-~~~~- 74 (277)
T 3e61_A 7 KSKLIGLLLPDMSNPFF--TLIARGVEDVALAHG-YQVLIGNS-DN------DIKKAQGYLATFVSHNCTGMIS-TAFN- 74 (277)
T ss_dssp ---CEEEEESCTTSHHH--HHHHHHHHHHHHHTT-CCEEEEEC-TT------CHHHHHHHHHHHHHTTCSEEEE-CGGG-
T ss_pred CCCEEEEEECCCCCHHH--HHHHHHHHHHHHHCC-CEEEEEeC-CC------CHHHHHHHHHHHHhCCCCEEEE-ecCC-
Confidence 335688888753 355 677888888999999 77664321 11 2344566778888889999998 5532
Q ss_pred HHHHHHH-HHHHcCC
Q 008863 244 MTIHLFT-EANRMGL 257 (550)
Q Consensus 244 ~~~~il~-~a~~~g~ 257 (550)
...+. .+.+.|+
T Consensus 75 --~~~~~~~l~~~~i 87 (277)
T 3e61_A 75 --ENIIENTLTDHHI 87 (277)
T ss_dssp --HHHHHHHHHHC-C
T ss_pred --hHHHHHHHHcCCC
Confidence 23466 6777765
No 320
>1y5e_A Molybdenum cofactor biosynthesis protein B; structural genomics, protein structure initiative, PSI, MCSG, midwest center for structural genomics; 1.90A {Bacillus cereus} SCOP: c.57.1.1
Probab=25.52 E-value=2.7e+02 Score=22.60 Aligned_cols=68 Identities=13% Similarity=0.114 Sum_probs=45.5
Q ss_pred cCCeEEEEEEEcCCCCC-cchhHHHHHHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhc-CCCeEEEEEcC
Q 008863 165 YNWRRVAAIYEDNVYGG-DSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQD-KQSRVFIVLQA 240 (550)
Q Consensus 165 ~~w~~v~ii~~~~~~g~-~~~~~~~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~-~~~~~ii~~~~ 240 (550)
|.--++++|...++-|. .......+.+.+.+.| ..+.....++. +.+.+...+++..+ .++|+||. .+
T Consensus 11 ~~~~rv~Ii~tGdElg~i~Dsn~~~l~~~L~~~G-~~v~~~~iv~D------d~~~i~~~l~~~~~~~~~DlVit-tG 80 (169)
T 1y5e_A 11 PKEVRCKIVTISDTRTEETDKSGQLLHELLKEAG-HKVTSYEIVKD------DKESIQQAVLAGYHKEDVDVVLT-NG 80 (169)
T ss_dssp -CCCEEEEEEECSSCCTTTCHHHHHHHHHHHHHT-CEEEEEEEECS------SHHHHHHHHHHHHTCTTCSEEEE-EC
T ss_pred ccCCEEEEEEEcCccCeeccChHHHHHHHHHHCC-CeEeEEEEeCC------CHHHHHHHHHHHHhcCCCCEEEE-cC
Confidence 33457888887664320 0334567888888889 88877666654 44677778877765 37899998 54
No 321
>2zzv_A ABC transporter, solute-binding protein; periplasmic substrate binding protein, calcium, lactate, trap transporter, transport protein; 1.40A {Thermus thermophilus} PDB: 2zzw_A 2zzx_A
Probab=25.50 E-value=55 Score=30.87 Aligned_cols=41 Identities=12% Similarity=0.040 Sum_probs=23.4
Q ss_pred CcEEEEEEEecCCccchhHHHHHHHHHHHHhcCCCCcEEEEEEecC
Q 008863 33 EVTKIGAIVDANSQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDH 78 (550)
Q Consensus 33 ~~i~IG~i~~~~~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~ 78 (550)
.++++|...|.+. ....+++...+.+++..+| +|++.++.+
T Consensus 34 ~~l~~~~~~~~~~----~~~~~~~~fa~~v~e~t~G-~v~i~v~~~ 74 (361)
T 2zzv_A 34 YRWRIQTAWDAGT----VGYSLFQKFTERVKELTDG-QLEVQPFPA 74 (361)
T ss_dssp EEEEEEESSCTTS----HHHHHHHHHHHHHHHHTTT-SEEEEEECT
T ss_pred eEEEEeccCCCCC----chhHHHHHHHHHHHHhcCC-eEEEEEeCC
Confidence 4788888776652 2334444455666654323 456666644
No 322
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=25.45 E-value=2.4e+02 Score=21.90 Aligned_cols=59 Identities=8% Similarity=0.003 Sum_probs=39.9
Q ss_pred chhHHHHHHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcCCCeEEEEEcCC--HHHHHHHHHHHHHcC
Q 008863 183 SGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQAS--LDMTIHLFTEANRMG 256 (550)
Q Consensus 183 ~~~~~~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~~ii~~~~~--~~~~~~il~~a~~~g 256 (550)
......+...+.+.| ..+.. . .+....+..+++..+++|++ +.. ......+++.+++..
T Consensus 17 ~~~~~~l~~~L~~~g-~~v~~---~----------~~~~~al~~l~~~~~dlii~-D~~l~~~~g~~~~~~lr~~~ 77 (154)
T 3gt7_A 17 PTQAEHLKHILEETG-YQTEH---V----------RNGREAVRFLSLTRPDLIIS-DVLMPEMDGYALCRWLKGQP 77 (154)
T ss_dssp HHHHHHHHHHHHTTT-CEEEE---E----------SSHHHHHHHHTTCCCSEEEE-ESCCSSSCHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHCC-CEEEE---e----------CCHHHHHHHHHhCCCCEEEE-eCCCCCCCHHHHHHHHHhCC
Confidence 446788888898888 76532 1 13345666777778999999 653 334567778887764
No 323
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=25.43 E-value=2e+02 Score=21.14 Aligned_cols=58 Identities=9% Similarity=0.064 Sum_probs=37.6
Q ss_pred hhHHHHHHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcCCCeEEEEEcCC--HHHHHHHHHHHHHcC
Q 008863 184 GKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQAS--LDMTIHLFTEANRMG 256 (550)
Q Consensus 184 ~~~~~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~~ii~~~~~--~~~~~~il~~a~~~g 256 (550)
.....+...+.+.| ..+.. . .+....++.+++..+++|++ +.. ......++++.++..
T Consensus 13 ~~~~~l~~~l~~~g-~~v~~---~----------~~~~~al~~l~~~~~dlvll-D~~~p~~~g~~~~~~l~~~~ 72 (122)
T 3gl9_A 13 VLRKIVSFNLKKEG-YEVIE---A----------ENGQIALEKLSEFTPDLIVL-XIMMPVMDGFTVLKKLQEKE 72 (122)
T ss_dssp HHHHHHHHHHHHTT-CEEEE---E----------SSHHHHHHHHTTBCCSEEEE-CSCCSSSCHHHHHHHHHTST
T ss_pred HHHHHHHHHHHHCC-cEEEE---e----------CCHHHHHHHHHhcCCCEEEE-eccCCCCcHHHHHHHHHhcc
Confidence 35677888888888 76542 1 13344566677778999998 643 334567777777654
No 324
>3uhf_A Glutamate racemase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta sandwich fold, isomerase; HET: DGL; 1.83A {Campylobacter jejuni} PDB: 3uho_A* 3uhp_A
Probab=25.40 E-value=3.7e+02 Score=24.05 Aligned_cols=84 Identities=10% Similarity=0.122 Sum_probs=45.2
Q ss_pred cEEEEEEEecCCccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCC------CCHHHHHHHHH---HhhhcCCeEEEEcC
Q 008863 34 VTKIGAIVDANSQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHN------RDPFQAATAAQ---ELINKEKVKVIAGM 104 (550)
Q Consensus 34 ~i~IG~i~~~~~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~------~~~~~a~~~~~---~li~~~~v~aiiG~ 104 (550)
.-+||++= |+.-|.... +...+.+ |+..+.+ +.|+. .+.....+.+. +.+.+.++.+|+-+
T Consensus 24 ~~~IgvfD--SGvGGLtv~---~~i~~~l----P~e~~iy-~~D~a~~PYG~ks~e~i~~~~~~~~~~L~~~g~d~IVIA 93 (274)
T 3uhf_A 24 AMKIGVFD--SGVGGLSVL---KSLYEAR----LFDEIIY-YGDTARVPYGVKDKDTIIKFCLEALDFFEQFQIDMLIIA 93 (274)
T ss_dssp CCEEEEEE--SSSTTHHHH---HHHHHTT----CCSEEEE-EECTTTCCCTTSCHHHHHHHHHHHHHHHTTSCCSEEEEC
T ss_pred CCeEEEEE--CCCChHHHH---HHHHHHC----CCCCEEE-EecCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEe
Confidence 45677654 322344443 3334444 5556655 33642 23333333332 34445789988865
Q ss_pred CChHHHHHHHHhhccCCccEEec
Q 008863 105 ETWEETAVVAEIASRVQVPILSF 127 (550)
Q Consensus 105 ~~s~~~~~v~~~~~~~~iP~is~ 127 (550)
-++..+.++..+-+.+.+|+|..
T Consensus 94 CNTa~~~al~~lr~~~~iPvigi 116 (274)
T 3uhf_A 94 CNTASAYALDALRAKAHFPVYGV 116 (274)
T ss_dssp CHHHHHHSHHHHHHHCSSCEECS
T ss_pred CCChhHHHHHHHHHhcCCCEEcC
Confidence 44444444566667789999874
No 325
>1h45_A Lactoferrin; metal transport, iron transport, metal binding; 1.95A {Homo sapiens} SCOP: c.94.1.2 PDB: 1eh3_A 2pms_A* 1h43_A 1h44_A 1dsn_A 1lct_A 1hse_A 1vfe_A 1l5t_A 1vfd_A 1lgb_C* 1z6v_A 1z6w_A
Probab=25.02 E-value=95 Score=28.91 Aligned_cols=43 Identities=9% Similarity=-0.089 Sum_probs=34.2
Q ss_pred chHHHHHHHHHhCCCCCCeEEEecCCChHHHHHhhhcccccEEeec
Q 008863 490 FSIELFRLVVDHLNYDLPYEFVPHDGVYDDLINGVYDKVNYFNYHD 535 (550)
Q Consensus 490 fciDll~~la~~l~f~~~~~~~~~~g~w~Gmi~el~~~~ad~a~~~ 535 (550)
-|-+|.+.+.+.++.+ ++++..+ .++..|..+.+|+||++..+
T Consensus 19 KC~~l~~~~~~~~~~~--vecv~~~-~~~~ci~aI~~g~AD~~~ld 61 (334)
T 1h45_A 19 KCFQWQRNMRRVRGPP--VSCIKRD-SPIQCIQAIAENRADAVTLD 61 (334)
T ss_dssp HHHHHHHHHHHTTCCC--EEEEECS-SHHHHHHHHHTTSCCBEEEC
T ss_pred HHHHHHHHHhhcCCCc--eEEEEcC-CHHHHHHHHHcCCCCEEEeC
Confidence 4677777775555666 7777754 79999999999999999874
No 326
>3vp7_A Vacuolar protein sorting-associated protein 30; targeting, PI3-kinase complex I, PRE-autophagosomal structur protein transport; 2.30A {Saccharomyces cerevisiae}
Probab=24.94 E-value=47 Score=28.59 Aligned_cols=25 Identities=32% Similarity=0.502 Sum_probs=22.5
Q ss_pred cchHHHHHHHHHhCCCCC-CeEEEec
Q 008863 489 GFSIELFRLVVDHLNYDL-PYEFVPH 513 (550)
Q Consensus 489 GfciDll~~la~~l~f~~-~~~~~~~ 513 (550)
|.+.=||.-|++.++|++ .|+++|-
T Consensus 42 Gq~~LLL~tla~kl~~~f~~Y~L~Pm 67 (220)
T 3vp7_A 42 GQLILLLATINKNLKINLVDYELQPM 67 (220)
T ss_dssp HHHHHHHHHHHHHTTCCCSSEEEECC
T ss_pred HHHHHHHHHHHHHhCCCcccceEEeC
Confidence 999999999999999998 5888773
No 327
>3fni_A Putative diflavin flavoprotein A 3; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.30A {Nostoc SP} PDB: 2klb_A
Probab=24.75 E-value=2.6e+02 Score=22.34 Aligned_cols=89 Identities=8% Similarity=0.007 Sum_probs=50.1
Q ss_pred eEEEEEEEcCCCCCcchhHHHHHHHHhcCCCeEEEEEeecCCCCCCCCChH-HHHHHHHHhhcCCCeEEEEEcCCH--HH
Q 008863 168 RRVAAIYEDNVYGGDSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKE-AVRGELKKVQDKQSRVFIVLQASL--DM 244 (550)
Q Consensus 168 ~~v~ii~~~~~~g~~~~~~~~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~-d~~~~l~~i~~~~~~~ii~~~~~~--~~ 244 (550)
+++.|+|... +|.-+..++.+.+.+.+.| +.+.... +.. . +....+..+. ..|.||+ .++. ..
T Consensus 5 ~kv~IvY~S~-~GnT~~iA~~ia~~l~~~g-~~v~~~~-~~~--------~~~~~~~~~~~~--~~d~ii~-Gspty~g~ 70 (159)
T 3fni_A 5 TSIGVFYVSE-YGYSDRLAQAIINGITKTG-VGVDVVD-LGA--------AVDLQELRELVG--RCTGLVI-GMSPAASA 70 (159)
T ss_dssp CEEEEEECTT-STTHHHHHHHHHHHHHHTT-CEEEEEE-SSS--------CCCHHHHHHHHH--TEEEEEE-ECCBTTSH
T ss_pred CEEEEEEECC-ChHHHHHHHHHHHHHHHCC-CeEEEEE-CcC--------cCCHHHHHHHHH--hCCEEEE-EcCcCCCC
Confidence 5788888654 4434677788888888888 7654322 222 2 3334444443 4677777 4432 11
Q ss_pred --HHHHHHHHHHcCCCCCCEEEEEeccc
Q 008863 245 --TIHLFTEANRMGLVGKDSVWIVTNTV 270 (550)
Q Consensus 245 --~~~il~~a~~~g~~~~~~~~i~~~~~ 270 (550)
...++..+....+.+.....+.+..|
T Consensus 71 ~p~~~~l~~l~~~~~~~k~va~fgs~g~ 98 (159)
T 3fni_A 71 ASIQGALSTILGSVNEKQAVGIFETGGG 98 (159)
T ss_dssp HHHHHHHHHHHHHCCTTSEEEEECCSSS
T ss_pred ccHHHHHHHHHhhcccCCEEEEEEcCCC
Confidence 24567666666665554444444333
No 328
>1vsq_C Mannose-specific phosphotransferase enzyme IIB component; sugar transport, complex (transferase/phosphocarrier, cytoplasm, membrane; HET: NEP; NMR {Escherichia coli} PDB: 2jzn_C 2jzo_D 2jzh_A
Probab=24.73 E-value=1.9e+02 Score=23.66 Aligned_cols=80 Identities=8% Similarity=0.004 Sum_probs=54.2
Q ss_pred hHHHHHHHHHHcCCeEEEEEEEcCCCCCcchhHHHHHHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcCCCe
Q 008863 154 QMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSR 233 (550)
Q Consensus 154 ~~~al~~~l~~~~w~~v~ii~~~~~~g~~~~~~~~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~ 233 (550)
.++....|.++++.+++.++-+.-.- ..+.+.+-....-.| +++.... .++....+.+-+..+.+
T Consensus 17 HGQV~t~W~~~~~~~~IiVvnD~vA~---D~~~k~~lk~a~P~g-vk~~i~s-----------ve~ai~~~~~~~~~~~~ 81 (165)
T 1vsq_C 17 HGQVATRWTKETNVSRIIVVSDEVAA---DTVRKTLLTQVAPPG-VTAHVVD-----------VAKMIRVYNNPKYAGER 81 (165)
T ss_dssp CTTHHHHHHHHTTCSEEEEECHHHHT---CHHHHHHHHHTCCTT-CEEEEEC-----------HHHHHHHHTCGGGTTCE
T ss_pred chheeeeeccccCCCEEEEeCccccC---CHHHHHHHHhcCCCC-CeEEEEE-----------HHHHHHHHhccccCCcE
Confidence 35667889999999999887765432 456666666666667 7765421 24555555554445778
Q ss_pred EEEEEcCCHHHHHHHH
Q 008863 234 VFIVLQASLDMTIHLF 249 (550)
Q Consensus 234 ~ii~~~~~~~~~~~il 249 (550)
++++ +-++.++..++
T Consensus 82 v~ll-~k~p~d~~~lv 96 (165)
T 1vsq_C 82 VMLL-FTNPTDVERLV 96 (165)
T ss_dssp EEEE-ESSHHHHHHHH
T ss_pred EEEE-ECCHHHHHHHH
Confidence 8888 88998887764
No 329
>3k6q_A Putative ligand binding protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.80A {Syntrophomonas wolfei subsp}
Probab=24.43 E-value=12 Score=29.48 Aligned_cols=35 Identities=23% Similarity=0.331 Sum_probs=25.8
Q ss_pred cccchHHHHHHHHHhCCCCCCeEEEecCCChHHHHHh
Q 008863 487 YDGFSIELFRLVVDHLNYDLPYEFVPHDGVYDDLING 523 (550)
Q Consensus 487 ~~GfciDll~~la~~l~f~~~~~~~~~~g~w~Gmi~e 523 (550)
+--..+++|+++-+...|+ .+++..+|+|++-+.|
T Consensus 36 ~~~is~~lL~~~L~~y~f~--~e~i~EdGs~t~~l~e 70 (139)
T 3k6q_A 36 LLFFSEQIIKDLLQDLKIH--AELSKEDGIIIGTIDG 70 (139)
T ss_dssp EEEEEHHHHHHHTTTCCEE--EEEEEETTEEEEEETT
T ss_pred eeeeeHHHHHHHHhcccCc--eEEEecCCeEEEEecC
Confidence 3337889999999777777 8877668988764444
No 330
>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0
Probab=23.82 E-value=2.3e+02 Score=21.25 Aligned_cols=59 Identities=20% Similarity=0.251 Sum_probs=41.3
Q ss_pred chhHHHHHHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcCCCeEEEEEcCCH----HHHHHHHHHHHHcC
Q 008863 183 SGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASL----DMTIHLFTEANRMG 256 (550)
Q Consensus 183 ~~~~~~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~~ii~~~~~~----~~~~~il~~a~~~g 256 (550)
......+...+.+.| ..+... .+....+..+++..+++|++ +... .....+++.+++.+
T Consensus 16 ~~~~~~l~~~L~~~g-~~v~~~-------------~~~~~a~~~l~~~~~dlvi~-D~~l~~~~~~g~~~~~~l~~~~ 78 (136)
T 3kto_A 16 KDARAALSKLLSPLD-VTIQCF-------------ASAESFMRQQISDDAIGMII-EAHLEDKKDSGIELLETLVKRG 78 (136)
T ss_dssp HHHHHHHHHHHTTSS-SEEEEE-------------SSHHHHTTSCCCTTEEEEEE-ETTGGGBTTHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHCC-cEEEEe-------------CCHHHHHHHHhccCCCEEEE-eCcCCCCCccHHHHHHHHHhCC
Confidence 446788888999888 765421 13345566677778999999 6553 35678888888875
No 331
>3ho7_A OXYR; beta-alpha-barrels, DNA-binding, transcription, transcriptio regulation; 1.58A {Porphyromonas gingivalis}
Probab=23.79 E-value=1.2e+02 Score=25.48 Aligned_cols=49 Identities=6% Similarity=-0.087 Sum_probs=35.9
Q ss_pred ccchHHHHHHHHHhCCCCCCeEEEecCCChHHHHHhhhcccccEEeeceeee
Q 008863 488 DGFSIELFRLVVDHLNYDLPYEFVPHDGVYDDLINGVYDKVNYFNYHDKLLF 539 (550)
Q Consensus 488 ~GfciDll~~la~~l~f~~~~~~~~~~g~w~Gmi~el~~~~ad~a~~~~ti~ 539 (550)
..+..+++.++.+... + +++....+..+.++..|.+|++|+|+......
T Consensus 23 ~~~l~~~l~~~~~~~P-~--v~i~~~~~~~~~~~~~l~~g~~Dl~i~~~~~~ 71 (232)
T 3ho7_A 23 PYLLPRVFPIWKKELA-G--LEIHVSEMQTSRCLASLLSGEIDMAIIASKAE 71 (232)
T ss_dssp HHHHHHHHHHHHHHST-T--EEEEEEECCHHHHHHHHHHTSCSEEEESSCCC
T ss_pred hhhhHHHHHHHHHHCC-C--cEEEEEeCCHHHHHHHHHcCCCCEEEEcCCCC
Confidence 3456677777776653 3 44544557789999999999999999876543
No 332
>1ou0_A Precorrin-8X methylmutase related protein; structural genomics, PSI, protein structure initiative; 2.10A {Thermoplasma acidophilum dsm 1728} SCOP: c.23.17.1
Probab=23.76 E-value=77 Score=26.99 Aligned_cols=72 Identities=18% Similarity=0.176 Sum_probs=47.1
Q ss_pred hhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhc--CCeEEEEc-CCChHHHHHHHHhhccCCccEE
Q 008863 49 KQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINK--EKVKVIAG-METWEETAVVAEIASRVQVPIL 125 (550)
Q Consensus 49 ~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~--~~v~aiiG-~~~s~~~~~v~~~~~~~~iP~i 125 (550)
.+...|++.|.+++ ++ .+... +|..+|+-..++++.+ -+..+||| |...-.+......+...++|+|
T Consensus 114 TRsaaa~~~~~~~l----~~---~I~aI---GNAPTAL~~Lleli~~g~~~PalVIG~PVGFVgaaESK~~L~~~~vP~I 183 (207)
T 1ou0_A 114 TRSAAGIRIAMQDH----RN---SVIVI---GNAPTALLEAMRMIEENGWYDIPIVGIPVGFINASKAKEGLVSSHIEYI 183 (207)
T ss_dssp CHHHHHHHHHHHHC----SS---EEEEE---SSCHHHHHHHHHHHHHHTCTTCCEEECCCCSHHHHHHHHHHHHSSSCEE
T ss_pred CHHHHHHHHHHHHc----CC---cEEEE---eCcHHHHHHHHHHHHcCCCCCcEEEEeCCCccCHHHHHHHHhcCCCCEE
Confidence 35668888888876 23 22222 5667899999999964 35778888 5554444333444455699999
Q ss_pred eccCC
Q 008863 126 SFAAP 130 (550)
Q Consensus 126 s~~~~ 130 (550)
..-..
T Consensus 184 ~~~Gr 188 (207)
T 1ou0_A 184 SVEGH 188 (207)
T ss_dssp EESSS
T ss_pred EEeCC
Confidence 86544
No 333
>1ytl_A Acetyl-COA decarboxylase/synthase complex epsilon 2; structural genomics; 1.80A {Archaeoglobus fulgidus} SCOP: c.31.1.6
Probab=23.55 E-value=1.1e+02 Score=25.29 Aligned_cols=38 Identities=13% Similarity=0.283 Sum_probs=28.0
Q ss_pred HHhhh-cCCeEEEEcCCCh--HHHHHHHHhhccCCccEEeccC
Q 008863 90 QELIN-KEKVKVIAGMETW--EETAVVAEIASRVQVPILSFAA 129 (550)
Q Consensus 90 ~~li~-~~~v~aiiG~~~s--~~~~~v~~~~~~~~iP~is~~~ 129 (550)
.+++. .++.+.++|. .. .....+..+++. ++|+++..-
T Consensus 29 a~lI~~AkRPvIl~Gg-v~~~~A~~eL~~~ae~-~iPVvtT~~ 69 (174)
T 1ytl_A 29 ANMIKKAKRPLLIVGP-DMTDEMFERVKKFVEK-DITVVATGS 69 (174)
T ss_dssp HHHHHHCSSEEEEECS-CCCHHHHHHHHHHHTS-SSEEEEETT
T ss_pred HHHHHcCCCCEEEECC-CCCccHHHHHHHHHHc-CCCEEEccc
Confidence 44443 3789999997 53 556678899999 999998643
No 334
>3keo_A Redox-sensing transcriptional repressor REX; DNA binding protein, winged helix, rossmann fold, NAD+; HET: NAD; 1.50A {Streptococcus agalactiae serogroup iiiorganism_taxid} PDB: 3keq_A* 3ket_A*
Probab=23.42 E-value=1.5e+02 Score=25.38 Aligned_cols=41 Identities=10% Similarity=0.127 Sum_probs=33.2
Q ss_pred HHhhcCCCeEEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEEecc
Q 008863 225 KKVQDKQSRVFIVLQASLDMTIHLFTEANRMGLVGKDSVWIVTNT 269 (550)
Q Consensus 225 ~~i~~~~~~~ii~~~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~ 269 (550)
+-+++.+.+.+++ +.....+..+...+.+.|..+ +|-+++.
T Consensus 142 ~~v~~~~Id~vII-AvPs~~aq~v~d~lv~~GIk~---I~nFap~ 182 (212)
T 3keo_A 142 DHLIDSDIETAIL-TVPSTEAQEVADILVKAGIKG---ILSFSPV 182 (212)
T ss_dssp HHC-CCSCCEEEE-CSCGGGHHHHHHHHHHHTCCE---EEECSSS
T ss_pred HHHHHcCCCEEEE-ecCchhHHHHHHHHHHcCCCE---EEEcCCc
Confidence 3344568999999 988888899999999999987 7877665
No 335
>2lpm_A Two-component response regulator; transcription regulator; NMR {Sinorhizobium meliloti}
Probab=23.24 E-value=49 Score=25.51 Aligned_cols=68 Identities=13% Similarity=0.203 Sum_probs=40.9
Q ss_pred EEEEEcCCCCCcchhHHHHHHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcCCCeEEEEEcCCH--HHHHHH
Q 008863 171 AAIYEDNVYGGDSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASL--DMTIHL 248 (550)
Q Consensus 171 ~ii~~~~~~g~~~~~~~~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~~ii~~~~~~--~~~~~i 248 (550)
.+|.+|+.. ....+...+++.| .++... . .+-.+.++.+++..+|+|++ +... .+...+
T Consensus 11 ILiVdD~~~-----~~~~l~~~L~~~G-~~v~~~-----a-------~~g~eAl~~~~~~~~Dlvll-Di~mP~~~G~el 71 (123)
T 2lpm_A 11 VLVVEDESM-----IAMLIEDTLCELG-HEVAAT-----A-------SRMQEALDIARKGQFDIAII-DVNLDGEPSYPV 71 (123)
T ss_dssp EEEESSSTT-----TSHHHHHHHHHHC-CCCCBC-----S-------CCHHHHHHHHHHCCSSEEEE-CSSSSSCCSHHH
T ss_pred EEEEeCCHH-----HHHHHHHHHHHCC-CEEEEE-----E-------CCHHHHHHHHHhCCCCEEEE-ecCCCCCCHHHH
Confidence 455555543 3567777788888 554211 0 23345566777789999999 5432 334556
Q ss_pred HHHHHHcCC
Q 008863 249 FTEANRMGL 257 (550)
Q Consensus 249 l~~a~~~g~ 257 (550)
+++.++.++
T Consensus 72 ~~~lr~~~i 80 (123)
T 2lpm_A 72 ADILAERNV 80 (123)
T ss_dssp HHHHHHTCC
T ss_pred HHHHHcCCC
Confidence 666666553
No 336
>1gtk_A Porphobilinogen deaminase; lyase, biosynthesis of linear tetrapyrrole, all alpha/beta; HET: DPM; 1.66A {Escherichia coli} SCOP: c.94.1.1 d.50.2.1 PDB: 1ah5_A* 2ypn_A* 1ypn_A* 1pda_A*
Probab=23.00 E-value=1e+02 Score=28.28 Aligned_cols=22 Identities=14% Similarity=0.271 Sum_probs=17.8
Q ss_pred CChH-HHHHhhhcccccEEeece
Q 008863 515 GVYD-DLINGVYDKVNYFNYHDK 536 (550)
Q Consensus 515 g~w~-Gmi~el~~~~ad~a~~~~ 536 (550)
|-|. .+=..|++|++|+||.+|
T Consensus 60 GlFtkELe~aLl~g~iDiAVHSl 82 (313)
T 1gtk_A 60 GLFVKELEVALLENRADIAVHSM 82 (313)
T ss_dssp CTTHHHHHHHHHTTSCSEEEEEG
T ss_pred cchHHHHHHHHHcCCCcEEEecC
Confidence 4566 455788999999999987
No 337
>2x7q_A Ca3427, possible thiamine biosynthesis enzyme; unknown function; 2.00A {Candida albicans} PDB: 2x7p_A
Probab=22.68 E-value=79 Score=29.00 Aligned_cols=49 Identities=12% Similarity=-0.094 Sum_probs=33.9
Q ss_pred cccchHHHHHHHHHhCCCCCCeEEEecCCChHHHHHhhhcccccEEeecee
Q 008863 487 YDGFSIELFRLVVDHLNYDLPYEFVPHDGVYDDLINGVYDKVNYFNYHDKL 537 (550)
Q Consensus 487 ~~GfciDll~~la~~l~f~~~~~~~~~~g~w~Gmi~el~~~~ad~a~~~~t 537 (550)
+.++-+-+-+.+-+..|++ +++++..+.-+.++..|..|++|+++++.+
T Consensus 27 ~~p~~~A~~~G~~~~~Gl~--V~~~~~~~g~~~~~~al~~G~~D~~~~~~~ 75 (321)
T 2x7q_A 27 STPLFFAQQQGYYKAHDLS--IEFVKVPEGSGRLINLLNSNEVDIAIGLTE 75 (321)
T ss_dssp GHHHHHHHHTTHHHHTTCC--EEEEECTTCHHHHHHHHHTTSCSEEEEEHH
T ss_pred chHHHHHHHCCcHHHCCce--EEEEECCCCHHHHHHHHHcCCccEEecCcH
Confidence 3444444444455667888 778775544345899999999999998774
No 338
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=22.43 E-value=3.6e+02 Score=22.94 Aligned_cols=88 Identities=7% Similarity=-0.071 Sum_probs=56.6
Q ss_pred EEEEEEEcCCCCCcchhHHHHHHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcCCCeEEEE--EcCCHHH--
Q 008863 169 RVAAIYEDNVYGGDSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIV--LQASLDM-- 244 (550)
Q Consensus 169 ~v~ii~~~~~~g~~~~~~~~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~~ii~--~~~~~~~-- 244 (550)
++.+-.-..+ .|.-....+...++..| +++..- ... ......++.+++.++++|.+ .......
T Consensus 94 ~vll~~v~gd--~HdiG~~iv~~~l~~~G-~~Vi~L---G~~-------vp~e~iv~~~~~~~~d~v~l~~S~l~~~~~~ 160 (215)
T 3ezx_A 94 LAITFVAEGD--IHDIGHRLVTTMLGANG-FQIVDL---GVD-------VLNENVVEEAAKHKGEKVLLVGSALMTTSML 160 (215)
T ss_dssp EEEEEECTTC--CCCHHHHHHHHHHHHTS-CEEEEC---CSS-------CCHHHHHHHHHHTTTSCEEEEEECSSHHHHT
T ss_pred eEEEEeCCCC--hhHHHHHHHHHHHHHCC-CeEEEc---CCC-------CCHHHHHHHHHHcCCCEEEEEchhcccCcHH
Confidence 5555554444 33666888889999999 887542 221 13345667777889998888 5555543
Q ss_pred -HHHHHHHHHHcCCCCCCEEEEEecc
Q 008863 245 -TIHLFTEANRMGLVGKDSVWIVTNT 269 (550)
Q Consensus 245 -~~~il~~a~~~g~~~~~~~~i~~~~ 269 (550)
...+++.+++.|+...-.+|++...
T Consensus 161 ~~~~~i~~l~~~~~~~~v~v~vGG~~ 186 (215)
T 3ezx_A 161 GQKDLMDRLNEEKLRDSVKCMFGGAP 186 (215)
T ss_dssp HHHHHHHHHHHTTCGGGSEEEEESSS
T ss_pred HHHHHHHHHHHcCCCCCCEEEEECCC
Confidence 4677888888887433335665443
No 339
>1jye_A Lactose operon repressor; gene regulation, protein stability, protein DNA-binding, transcription; 1.70A {Escherichia coli} SCOP: c.93.1.1 PDB: 1lbi_A 1lbg_A* 1lbh_A 1jyf_A 3edc_A 1efa_A* 1jwl_A* 2pe5_A* 1tlf_A* 2p9h_A* 2paf_A* 1cjg_A* 1l1m_A 1osl_A 2kei_A* 2kej_A* 2kek_A* 2bjc_A 1lqc_A 1lcc_A* ...
Probab=22.41 E-value=1.9e+02 Score=26.59 Aligned_cols=67 Identities=9% Similarity=0.035 Sum_probs=40.1
Q ss_pred HHHcCCeEEEEEEEcC--CCCCcchhHHHHHHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcCCCeEEEE
Q 008863 162 ARKYNWRRVAAIYEDN--VYGGDSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIV 237 (550)
Q Consensus 162 l~~~~w~~v~ii~~~~--~~g~~~~~~~~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~~ii~ 237 (550)
|+.-.-..++++..+. .|. ....+.+.+.+.+.| ..+..... ... +.......++.+...+.|.||+
T Consensus 56 l~~~~~~~Igvi~~~~~~~~~--~~~~~gi~~~a~~~g-~~~~~~~~-~~~-----~~~~~~~~l~~l~~~~vdGiIi 124 (349)
T 1jye_A 56 LAGKQSLLIGVATSSLALHAP--SQIVAAILSRADQLG-ASVVVSMV-ERS-----GVEACKTAVHNLLAQRVSGLII 124 (349)
T ss_dssp ------CEEEEEESCTTSHHH--HHHHHHHHHHHHHTT-CEEEEEEC-CSS-----SHHHHHHHHHHHHTTTCSCEEE
T ss_pred hhcCCCCEEEEEeCCCCcccH--HHHHHHHHHHHHHcC-CEEEEEeC-CCC-----cHHHHHHHHHHHHHCCCCEEEE
Confidence 3333446788888653 344 567778888888999 87754321 110 1233455677777778898888
No 340
>3o1i_D Periplasmic protein TORT; ligand free, two component sensor, periplasmic binding prote signaling protein; HET: PE4; 2.80A {Vibrio parahaemolyticus} PDB: 3o1h_B* 3o1j_C
Probab=22.01 E-value=76 Score=28.54 Aligned_cols=81 Identities=10% Similarity=-0.029 Sum_probs=49.8
Q ss_pred eEEEEEEEcC--CCCCcchhHHHHHHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcCCCeEEEEEcCCHHHH
Q 008863 168 RRVAAIYEDN--VYGGDSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMT 245 (550)
Q Consensus 168 ~~v~ii~~~~--~~g~~~~~~~~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~~ii~~~~~~~~~ 245 (550)
.+|+++..+. .|. ....+.+.+.+++.| ..+.....-.. . +.......++.+...+.|.||+........
T Consensus 6 ~~Igvi~~~~~~~~~--~~~~~g~~~~a~~~g-~~~~~~~~~~~-~----~~~~~~~~~~~~~~~~vdgiii~~~~~~~~ 77 (304)
T 3o1i_D 6 EKICAIYPHLKDSYW--LSVNYGMVSEAEKQG-VNLRVLEAGGY-P----NKSRQEQQLALCTQWGANAIILGTVDPHAY 77 (304)
T ss_dssp CEEEEEESCSCSHHH--HHHHHHHHHHHHHHT-CEEEEEECSST-T----CHHHHHHHHHHHHHHTCSEEEECCSSTTSS
T ss_pred cEEEEEeCCCCCcHH--HHHHHHHHHHHHHcC-CeEEEEcCCCC-C----CHHHHHHHHHHHHHcCCCEEEEeCCChhHH
Confidence 4688888654 354 667788888888888 77765432110 0 223445667777777889888823333333
Q ss_pred HHHHHHHHHcCC
Q 008863 246 IHLFTEANRMGL 257 (550)
Q Consensus 246 ~~il~~a~~~g~ 257 (550)
...++.+. .|+
T Consensus 78 ~~~~~~~~-~~i 88 (304)
T 3o1i_D 78 EHNLKSWV-GNT 88 (304)
T ss_dssp TTTHHHHT-TTS
T ss_pred HHHHHHHc-CCC
Confidence 44566666 554
No 341
>3h5t_A Transcriptional regulator, LACI family; DNA-dependent, protein structure initiative II(PSI II), NYSGXRC, 11232D), structural genomics; 2.53A {Corynebacterium glutamicum}
Probab=21.97 E-value=2.9e+02 Score=25.48 Aligned_cols=106 Identities=8% Similarity=-0.001 Sum_probs=60.4
Q ss_pred chhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhc-CCeEEEEcCCChHHHHHHHHhhccCC-----
Q 008863 48 GKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINK-EKVKVIAGMETWEETAVVAEIASRVQ----- 121 (550)
Q Consensus 48 g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~-~~v~aiiG~~~s~~~~~v~~~~~~~~----- 121 (550)
...-..|++.|+++.+-.. .....+.....+...+.+.+.+++.. ..+.|||..... .+..+...+.+.+
T Consensus 221 ~~~R~~Gf~~al~~~g~~~---~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ai~~~nD~-~A~g~~~al~~~G~~vP~ 296 (366)
T 3h5t_A 221 QRDRVRGAMEVFIEAGIDP---GTVPIMECWINNRQHNFEVAKELLETHPDLTAVLCTVDA-LAFGVLEYLKSVGKSAPA 296 (366)
T ss_dssp HHHHHHHHHHHHHHHTCCG---GGSCEEEESSCCHHHHHHHHHHHHHHCTTCCEEEESSHH-HHHHHHHHHHHTTCCTTT
T ss_pred HHHHHHHHHHHHHHCCCCC---CcceEEEcCCCCHHHHHHHHHHHHcCCCCCcEEEECCcH-HHHHHHHHHHHcCCCCCC
Confidence 3456689999998874321 11112233345666777778888763 468999975443 3334444455444
Q ss_pred -ccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHH
Q 008863 122 -VPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLAR 163 (550)
Q Consensus 122 -iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~ 163 (550)
|.++++... +... .|-+-.+..+...+++..+++|.
T Consensus 297 disvigfD~~---~~~~---~~~lttv~q~~~~~G~~Av~~L~ 333 (366)
T 3h5t_A 297 DLSLTGFDGT---HMAL---ARDLTTVIQPNKLKGFKAGETLL 333 (366)
T ss_dssp TCEEEEEECC---HHHH---HTTCCEEECCHHHHHHHHHHHHH
T ss_pred ceEEEEECCC---hhhc---CCCccEEEeCHHHHHHHHHHHHH
Confidence 336666544 2221 12244566667777777777664
No 342
>3e7d_A COBH, precorrin-8X methylmutase; ssgcid, decode, braba00006A, structural genomics, seattle ST genomics center for infectious disease; 1.80A {Brucella abortus} SCOP: c.23.17.1
Probab=21.95 E-value=88 Score=26.75 Aligned_cols=51 Identities=20% Similarity=0.176 Sum_probs=32.4
Q ss_pred CCHHHHHHHHHHhhhcC--CeEEEEc-CCChHHHHHHHH-hhc-cCCccEEeccCC
Q 008863 80 RDPFQAATAAQELINKE--KVKVIAG-METWEETAVVAE-IAS-RVQVPILSFAAP 130 (550)
Q Consensus 80 ~~~~~a~~~~~~li~~~--~v~aiiG-~~~s~~~~~v~~-~~~-~~~iP~is~~~~ 130 (550)
+|..+|+-..++++.+. +..+||| |...-.+..... +.+ ..++|+|..-..
T Consensus 138 GNAPTAL~~Lleli~~g~~~PalVIG~PVGFV~aaESKe~L~~~~~~vP~I~~~Gr 193 (212)
T 3e7d_A 138 GNAPTALFRLFELLDAGAPKPALIIGMPVGFVGAAESKDELAANSRGVPYVIVRGR 193 (212)
T ss_dssp SSCHHHHHHHHHHHHTTCCCCSEEEECCCSSSSHHHHHHHHHHCCTTCCEEEECSS
T ss_pred ECcHHHHHHHHHHHHcCCCCcceEEEeCCCccChHHHHHHHHhcCCCCCEEEEecC
Confidence 56678999999999753 3578888 444332222222 333 268999986544
No 343
>3gxa_A Outer membrane lipoprotein GNA1946; periplasmic, L-methionine bingding, protein binding; 2.25A {Neisseria meningitidis}
Probab=21.87 E-value=1.4e+02 Score=26.70 Aligned_cols=48 Identities=15% Similarity=0.088 Sum_probs=28.8
Q ss_pred CCCcEEEEEEEecCCccchhHHHHHHHHHH-HHhcCCCCcEEEEEEecCCCCHHHHHH
Q 008863 31 IEEVTKIGAIVDANSQMGKQAITAMKIAVQ-NFNSDSRNHKLSLQIRDHNRDPFQAAT 87 (550)
Q Consensus 31 ~~~~i~IG~i~~~~~~~g~~~~~a~~~Av~-~iN~~~~~~~l~~~~~d~~~~~~~a~~ 87 (550)
..++|+||+.-... ...++.+++ .+.+ .|++|+++.+++...|..|+.
T Consensus 21 ~~~tIkVG~~~~p~-------~~il~~~~k~~l~k--~Gi~veiv~F~Dy~~pN~AL~ 69 (275)
T 3gxa_A 21 AKKEIVFGTTVGDF-------GDMVKEQIQPELEK--KGYTVKLVEFTDYVRPNLALA 69 (275)
T ss_dssp --CEEEEEEETTHH-------HHHHHHTHHHHHHT--TTCEEEEEEESSSSHHHHHHH
T ss_pred CCCeEEEEEeCCCh-------HHHHHHHHHHHHHH--cCCeEEEEEeCCcHhHHHHHH
Confidence 44689999985221 122332222 2333 389999999988777776653
No 344
>2fyi_A HTH-type transcriptional regulator CBL; Lys-R family, cofactor-binding DO cysteine biosynthesis; 2.80A {Escherichia coli K12} SCOP: c.94.1.1
Probab=21.80 E-value=1.1e+02 Score=25.93 Aligned_cols=44 Identities=5% Similarity=-0.022 Sum_probs=33.2
Q ss_pred cchHHHHHHHHHhCCCCCCeEEEecCCChHHHHHhhhcccccEEeec
Q 008863 489 GFSIELFRLVVDHLNYDLPYEFVPHDGVYDDLINGVYDKVNYFNYHD 535 (550)
Q Consensus 489 GfciDll~~la~~l~f~~~~~~~~~~g~w~Gmi~el~~~~ad~a~~~ 535 (550)
.+-.++|.++.+... + .++....+..+.++..|.+|++|+|+..
T Consensus 27 ~~l~~~l~~f~~~~P-~--v~l~l~~~~~~~~~~~l~~g~~Dl~i~~ 70 (228)
T 2fyi_A 27 YSLPEVIKAFRELFP-E--VRLELIQGTPQEIATLLQNGEADIGIAS 70 (228)
T ss_dssp HTHHHHHHHHHHHCT-T--EEEEEEECCHHHHHHHHHHTSCSEEEES
T ss_pred HHHHHHHHHHHHHCC-C--cEEEEEeCCHHHHHHHHHcCCccEEEEe
Confidence 455688888877653 3 4444445778999999999999999975
No 345
>2z1a_A 5'-nucleotidase; metal-binding, nucleotide-binding, hydrolase, structural genomics, NPPSFA; HET: THM; 1.75A {Thermus thermophilus} SCOP: d.114.1.1 d.159.1.2
Probab=21.75 E-value=1.8e+02 Score=29.16 Aligned_cols=122 Identities=11% Similarity=0.047 Sum_probs=48.7
Q ss_pred CcchhHHHHHHHHHHHHhccccccccCCCCCCCcEEEEEEEecCCccch------------hHHHHHHHHHHHHhcCCCC
Q 008863 1 MNRFFFLVLIIASELVFVSPGVESASTNVNIEEVTKIGAIVDANSQMGK------------QAITAMKIAVQNFNSDSRN 68 (550)
Q Consensus 1 M~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~IG~i~~~~~~~g~------------~~~~a~~~Av~~iN~~~~~ 68 (550)
|||++++...+++.++++|++..+. ...+++|-.+-+.++.... .-..-+.-.++++++..++
T Consensus 1 ~~~~~~~~~~l~~~~~~~~~~~~~~-----~~~~l~Il~~~D~H~~~~~~~~~~~~~~~~~gg~~~~~~~v~~~r~~~~~ 75 (552)
T 2z1a_A 1 MKRREVLQAGMALGGLAGLGRALAQ-----GGFTLTLVHTNDTHAHLEPVELTLSGEKTPVGGVARRVALFDRVWARAKN 75 (552)
T ss_dssp --------------------------------CEEEEEEECCCTTCCSCEEEECSSSEEEECCHHHHHHHHHHHHHHSSS
T ss_pred CchhHHHHHHHHHHHHhccCCcCCC-----CCeeEEEEEEcccccCcccccccCcccccccCCHHHHHHHHHHHHhhCCC
Confidence 8877554443333334455432222 2357999999988842111 1123344556666655332
Q ss_pred cEEEEEEecC-CCCHHHH---HHHHHHhhhcCCeE-EEEcCCCh-HHHHHHHHhhccCCccEEecc
Q 008863 69 HKLSLQIRDH-NRDPFQA---ATAAQELINKEKVK-VIAGMETW-EETAVVAEIASRVQVPILSFA 128 (550)
Q Consensus 69 ~~l~~~~~d~-~~~~~~a---~~~~~~li~~~~v~-aiiG~~~s-~~~~~v~~~~~~~~iP~is~~ 128 (550)
.|-+..=|. .+.+... .+...+++..-++. +++|...- .....+....+..+.|+++..
T Consensus 76 -~l~l~~GD~~~gs~~~~~~~~~~~~~~ln~lg~d~~~lGNHEfd~g~~~l~~~l~~~~~~~L~aN 140 (552)
T 2z1a_A 76 -PLFLDAGDVFQGTLYFNQYRGLADRYFMHRLRYRAMALGNHEFDLGPGPLADFLKGARFKVVSAN 140 (552)
T ss_dssp -EEEEECSCCSSSSHHHHHHTTHHHHHHHHHTTCCEEECCGGGGTTCHHHHHHHHTTCCSEEECTT
T ss_pred -EEEEeCCCCCCCcHHHHHhCCcHHHHHHHhcCCCccccccccccCCHHHHHHHHhhCCCCEEEEE
Confidence 233333342 2233211 12334455444544 45564222 123456677788899999844
No 346
>3cf4_G Acetyl-COA decarboxylase/synthase epsilon subunit; methanomicrobia, iron-nikel-sulfur, 4Fe-NI-4S, oxidoreductas; 2.00A {Methanosarcina barkeri}
Probab=21.70 E-value=1.2e+02 Score=24.76 Aligned_cols=44 Identities=18% Similarity=0.265 Sum_probs=31.3
Q ss_pred HHHHHHhhh-cCCeEEEEcCCC--hHHHHHHHHhhccCCccEEeccC
Q 008863 86 ATAAQELIN-KEKVKVIAGMET--WEETAVVAEIASRVQVPILSFAA 129 (550)
Q Consensus 86 ~~~~~~li~-~~~v~aiiG~~~--s~~~~~v~~~~~~~~iP~is~~~ 129 (550)
++.+.+++. .++.+.++|... +.....+..+++..++|+++...
T Consensus 24 v~~aa~~L~~AkrPvil~G~g~~~~~a~~~l~~lae~~~iPV~~t~~ 70 (170)
T 3cf4_G 24 PEMAAKIISKAKRPLLMVGTLALDPELLDRVVKISKAANIPIAATGS 70 (170)
T ss_dssp HHHHHHHHHHCSSEEEEECSTTCCHHHHHHHHHHHHHHTCCEEECTT
T ss_pred HHHHHHHHHcCCCCEEEECCCccchhHHHHHHHHHHHhCCCEEECcc
Confidence 344444543 478999998743 45666788999999999987543
No 347
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=21.36 E-value=2.5e+02 Score=20.74 Aligned_cols=60 Identities=7% Similarity=0.026 Sum_probs=39.2
Q ss_pred chhHHHHHHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcCCCeEEEEEcCCH--HHHHHHHHHHHHcCC
Q 008863 183 SGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASL--DMTIHLFTEANRMGL 257 (550)
Q Consensus 183 ~~~~~~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~~ii~~~~~~--~~~~~il~~a~~~g~ 257 (550)
......+...+.+.| ..+... .+....+..+++..+++|++ +... .....+++++++...
T Consensus 16 ~~~~~~l~~~L~~~g-~~v~~~-------------~~~~~a~~~l~~~~~dlii~-d~~l~~~~g~~~~~~l~~~~~ 77 (132)
T 3lte_A 16 QAMAAAIERVLKRDH-WQVEIA-------------HNGFDAGIKLSTFEPAIMTL-DLSMPKLDGLDVIRSLRQNKV 77 (132)
T ss_dssp HHHHHHHHHHHHHTT-CEEEEE-------------SSHHHHHHHHHHTCCSEEEE-ESCBTTBCHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHCC-cEEEEe-------------CCHHHHHHHHHhcCCCEEEE-ecCCCCCCHHHHHHHHHhcCc
Confidence 345677888888888 665421 12344556666778999998 6443 346678888887654
No 348
>2vk2_A YTFQ, ABC transporter periplasmic-binding protein YTFQ; transport protein, galactofuranose; HET: GZL; 1.20A {Escherichia coli}
Probab=21.21 E-value=1.5e+02 Score=26.70 Aligned_cols=79 Identities=5% Similarity=-0.019 Sum_probs=46.8
Q ss_pred eEEEEEEEcC--CCCCcchhHHHHHHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcCCCeEEEEEcCCH-HH
Q 008863 168 RRVAAIYEDN--VYGGDSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASL-DM 244 (550)
Q Consensus 168 ~~v~ii~~~~--~~g~~~~~~~~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~~ii~~~~~~-~~ 244 (550)
.+|+++.... .|. ....+.+++.+.+.| ..+..... .. +.......++.+...+.+.||+ .... ..
T Consensus 3 ~~Ig~i~~~~~~~~~--~~~~~gi~~~a~~~g-~~l~~~~~--~~-----~~~~~~~~i~~l~~~~vdgiIi-~~~~~~~ 71 (306)
T 2vk2_A 3 LTVGFSQVGSESGWR--AAETNVAKSEAEKRG-ITLKIADG--QQ-----KQENQIKAVRSFVAQGVDAIFI-APVVATG 71 (306)
T ss_dssp CEEEEEECCCCSHHH--HHHHHHHHHHHHHHT-CEEEEEEC--TT-----CHHHHHHHHHHHHHHTCSEEEE-CCSSSSS
T ss_pred eEEEEEeCCCCCHHH--HHHHHHHHHHHHHcC-CEEEEeCC--CC-----CHHHHHHHHHHHHHcCCCEEEE-eCCChhh
Confidence 4677777643 344 556677788888888 77654321 11 2233445667777678888888 4432 22
Q ss_pred HHHHHHHHHHcCC
Q 008863 245 TIHLFTEANRMGL 257 (550)
Q Consensus 245 ~~~il~~a~~~g~ 257 (550)
....++.+.+.|+
T Consensus 72 ~~~~~~~~~~~~i 84 (306)
T 2vk2_A 72 WEPVLKEAKDAEI 84 (306)
T ss_dssp CHHHHHHHHHTTC
T ss_pred HHHHHHHHHHCCC
Confidence 2345666666665
No 349
>3ist_A Glutamate racemase; structural genomics, cell WALL biogenesis/degradation, isomerase, peptidoglycan synthesis; HET: MSE; 1.65A {Listeria monocytogenes} PDB: 3hfr_A* 3isv_A*
Probab=21.09 E-value=4.1e+02 Score=23.58 Aligned_cols=131 Identities=9% Similarity=0.079 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhhcCCeEEEEcCCChHHHHHHHHhhccCCccEEe---ccCCCCCCcccCCCCCeEEEEecCcHHhHHHHH
Q 008863 83 FQAATAAQELINKEKVKVIAGMETWEETAVVAEIASRVQVPILS---FAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIA 159 (550)
Q Consensus 83 ~~a~~~~~~li~~~~v~aiiG~~~s~~~~~v~~~~~~~~iP~is---~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~ 159 (550)
..+.+.+..|.. .++.+|+-+-++.++.++..+-+...+|+|. ++.. +........-+-=+.-..+......-
T Consensus 54 ~~~~~~~~~L~~-~g~~~IVIACNTa~~~al~~lr~~~~iPvigii~pa~~---~A~~~~~~~~IGVLaT~~Ti~s~~y~ 129 (269)
T 3ist_A 54 KFTWEMTNFLVD-RGIKMLVIACNTATAAALYDIREKLDIPVIGVIQPGSR---AALKATRNNKIGVLGTLGTVESMAYP 129 (269)
T ss_dssp HHHHHHHHHHHH-TTCSEEEECCHHHHHHHHHHHHHHCSSCEEESHHHHHH---HHHHHCSSSEEEEEECHHHHHHTHHH
T ss_pred HHHHHHHHHHHH-CCCCEEEEeCCCccHHHHHHHHHhcCCCEEeecHHHHH---HHHHHcCCCeEEEEeccchhhHHHHH
Q ss_pred HHHHHcCCeEEEEEEEcCCCCCcchhHHHHHHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcCCCeEEEEEc
Q 008863 160 DLARKYNWRRVAAIYEDNVYGGDSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQ 239 (550)
Q Consensus 160 ~~l~~~~w~~v~ii~~~~~~g~~~~~~~~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~~ii~~~ 239 (550)
+.+..++-.-....... ..+....++.. +.... ....+...++.+++.++|.||+ .
T Consensus 130 ~~i~~~~~~~~v~~~~~----------~~lV~~vE~g~---------~~~~~----~~~~l~~~l~~l~~~g~D~iVL-G 185 (269)
T 3ist_A 130 TALKGLNRRVEVDSLAC----------PKFVSVVESGE---------YKSAI----AKKVVAESLLPLKSTKIDTVIL-G 185 (269)
T ss_dssp HHHHHHCTTCEEEEEEC----------HHHHHHHHTTC---------TTSHH----HHHHHHHHHGGGGGSCCCEEEE-C
T ss_pred HHHHHhCCCCEEeccCC----------HHHHHHHHcCC---------CCCHH----HHHHHHHHHHHHHhCCCCEEEE-C
Q ss_pred CC
Q 008863 240 AS 241 (550)
Q Consensus 240 ~~ 241 (550)
|.
T Consensus 186 CT 187 (269)
T 3ist_A 186 CT 187 (269)
T ss_dssp ST
T ss_pred CC
No 350
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=21.00 E-value=2.7e+02 Score=20.94 Aligned_cols=57 Identities=7% Similarity=0.071 Sum_probs=40.5
Q ss_pred chhHHHHHHHHhc-CCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhc-CCCeEEEEEcCC---HHHHHHHHHHHHH
Q 008863 183 SGKLALLAEALQN-VSSSEIQSRLVLPPISSISDPKEAVRGELKKVQD-KQSRVFIVLQAS---LDMTIHLFTEANR 254 (550)
Q Consensus 183 ~~~~~~l~~~l~~-~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~-~~~~~ii~~~~~---~~~~~~il~~a~~ 254 (550)
......+...+.+ .| ..+.. . .+....++.+++ ..+++|++ +.. ......+++++++
T Consensus 14 ~~~~~~l~~~L~~~~~-~~v~~---~----------~~~~~a~~~l~~~~~~dlvi~-D~~l~~~~~g~~~~~~l~~ 75 (140)
T 3lua_A 14 EYEREKTKIIFDNIGE-YDFIE---V----------ENLKKFYSIFKDLDSITLIIM-DIAFPVEKEGLEVLSAIRN 75 (140)
T ss_dssp HHHHHHHHHHHHHHCC-CEEEE---E----------CSHHHHHTTTTTCCCCSEEEE-CSCSSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccC-ccEEE---E----------CCHHHHHHHHhcCCCCcEEEE-eCCCCCCCcHHHHHHHHHh
Confidence 3456788888888 78 76542 1 234556777777 78999999 755 4467788888888
No 351
>1duv_G Octase-1, ornithine transcarbamoylase; enzyme-inhibitor complex, transferase; HET: PSQ; 1.70A {Escherichia coli} SCOP: c.78.1.1 c.78.1.1 PDB: 1akm_A* 2otc_A*
Probab=20.98 E-value=5e+02 Score=23.99 Aligned_cols=132 Identities=11% Similarity=0.053 Sum_probs=76.1
Q ss_pred EEEEEEEecCCccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEc-CCChHHHHHH
Q 008863 35 TKIGAIVDANSQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAG-METWEETAVV 113 (550)
Q Consensus 35 i~IG~i~~~~~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG-~~~s~~~~~v 113 (550)
-.|+.+|...+ .+...+|+.|+.++ ++..+.+...++.-.-.+.+....+.++.- +.+|+- .......
T Consensus 45 k~la~lF~e~S---TRTR~SFE~A~~~L----Gg~~i~l~~~~ss~~kgEsl~DTarvLs~~-~D~IviR~~~~~~~--- 113 (333)
T 1duv_G 45 KNIALIFEKDS---TRTRCSFEVAAYDQ----GARVTYLGPSGSQIGHKESIKDTARVLGRM-YDGIQYRGYGQEIV--- 113 (333)
T ss_dssp CEEEEEESSCC---SHHHHHHHHHHHHT----TCEEEEECSSSSCBTTTBCHHHHHHHHTTT-CSEEEEECSCHHHH---
T ss_pred CEEEEEecCCC---ccHHHHHHHHHHHc----CCeEEEECCccccCcCCCcHHHHHHHHHHh-CCEEEEEcCCchHH---
Confidence 46888886653 58889999999998 455565543333322223444444445432 333332 2233333
Q ss_pred HHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHH---HH-cC--C--eEEEEEEEcCCCCCcchh
Q 008863 114 AEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLA---RK-YN--W--RRVAAIYEDNVYGGDSGK 185 (550)
Q Consensus 114 ~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l---~~-~~--w--~~v~ii~~~~~~g~~~~~ 185 (550)
..++...++|+|..... .. + -.++++|++ ++ +| . .+++++.+. . ...
T Consensus 114 ~~lA~~~~vPVINa~~~--------~~-------H-----PtQ~LaDl~Ti~e~~~g~~l~gl~ia~vGD~--~---~~v 168 (333)
T 1duv_G 114 ETLAEYASVPVWNGLTN--------EF-------H-----PTQLLADLLTMQEHLPGKAFNEMTLVYAGDA--R---NNM 168 (333)
T ss_dssp HHHHHHHSSCEEESCCS--------SC-------C-----HHHHHHHHHHHHHHSTTCCGGGCEEEEESCT--T---SHH
T ss_pred HHHHHhCCCCeEcCCCC--------CC-------C-----chHHHHHHHHHHHHhcCCCCCCcEEEEECCC--c---cch
Confidence 33445557999994321 11 1 246777775 45 66 2 466666542 2 346
Q ss_pred HHHHHHHHhcCCCeEEEE
Q 008863 186 LALLAEALQNVSSSEIQS 203 (550)
Q Consensus 186 ~~~l~~~l~~~g~~~v~~ 203 (550)
+..+...+...| +.+..
T Consensus 169 a~Sl~~~~~~~G-~~v~~ 185 (333)
T 1duv_G 169 GNSMLEAAALTG-LDLRL 185 (333)
T ss_dssp HHHHHHHHHHHC-CEEEE
T ss_pred HHHHHHHHHHcC-CEEEE
Confidence 777888888888 77654
No 352
>3miz_A Putative transcriptional regulator protein, LACI family; LACL family, protein structure initiative II (PSI II), NYSGXRC, structural genomics; 1.91A {Rhizobium etli}
Probab=20.94 E-value=3.1e+02 Score=24.34 Aligned_cols=69 Identities=13% Similarity=-0.062 Sum_probs=44.7
Q ss_pred HHHHHHcCCeEEEEEEEcC--CCCCcc-hhHHHHHHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcCCCeEE
Q 008863 159 ADLARKYNWRRVAAIYEDN--VYGGDS-GKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVF 235 (550)
Q Consensus 159 ~~~l~~~~w~~v~ii~~~~--~~g~~~-~~~~~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~~i 235 (550)
+.-|+.-+-+.|+++..+. .|. . .+.+.+.+.+.+.| ..+..... .. +.......++.+...+.|.|
T Consensus 5 Ar~L~~~~s~~Igvi~~~~~~~~~--~~~~~~gi~~~a~~~g-~~~~~~~~-~~------~~~~~~~~~~~l~~~~vdGi 74 (301)
T 3miz_A 5 ARLIRSSRSNTFGIITDYVSTTPY--SVDIVRGIQDWANANG-KTILIANT-GG------SSEREVEIWKMFQSHRIDGV 74 (301)
T ss_dssp -------CCCEEEEEESSTTTCCS--CHHHHHHHHHHHHHTT-CEEEEEEC-TT------CHHHHHHHHHHHHHTTCSEE
T ss_pred HHHHhhCCCCEEEEEeCCCcCccc--HHHHHHHHHHHHHHCC-CEEEEEeC-CC------ChHHHHHHHHHHHhCCCCEE
Confidence 3344445557899988764 454 6 88999999999999 87765331 11 23445667788888889988
Q ss_pred EE
Q 008863 236 IV 237 (550)
Q Consensus 236 i~ 237 (550)
|+
T Consensus 75 Ii 76 (301)
T 3miz_A 75 LY 76 (301)
T ss_dssp EE
T ss_pred EE
Confidence 88
No 353
>4dik_A Flavoprotein; TM0755, electron transport, DI-iron protein; 1.75A {Thermotoga maritima} PDB: 4dil_A 1vme_A*
Probab=20.83 E-value=5.5e+02 Score=24.45 Aligned_cols=153 Identities=10% Similarity=0.011 Sum_probs=82.7
Q ss_pred EEEEEEEecCCcc-chhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEc----CCChHH
Q 008863 35 TKIGAIVDANSQM-GKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAG----METWEE 109 (550)
Q Consensus 35 i~IG~i~~~~~~~-g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG----~~~s~~ 109 (550)
+.|-.|.|.++.. -.....-+....+..+.....-++.+....-.++....++...+-+.+.|+.+++= ...+..
T Consensus 231 Ldi~~I~P~HGpi~r~~~~~ii~~Y~~w~~~~~~~~~v~I~Y~S~yGnTe~mA~~ia~gl~~~Gv~~~~~~~~d~~~~~~ 310 (410)
T 4dik_A 231 LKIKALLPGHGLIWKKDPQRLLNHYVSVAKGDPKKGKVTVIYDSMYGFVENVMKKAIDSLKEKGFTPVVYKFSDEERPAI 310 (410)
T ss_dssp SCCSEEEESSSCBBSSCHHHHHHHHHHHHHTCCCTTEEEEEEECSSSHHHHHHHHHHHHHHHTTCEEEEEEECSSCCCCH
T ss_pred CCCCEEecCCcchhhcCHHHHHHHHHHhhcccccccceeeEEecccChHHHHHHHHHHHHHhcCCceEEEEeccCCCCCH
Confidence 4566788888532 23455556666666554432335555444445566666666666666678766541 122334
Q ss_pred HHHHHHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHH-cCCeEEEEEEEcCCCCCcchhHHH
Q 008863 110 TAVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARK-YNWRRVAAIYEDNVYGGDSGKLAL 188 (550)
Q Consensus 110 ~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~-~~w~~v~ii~~~~~~g~~~~~~~~ 188 (550)
+..+..+....++-+=+|. .+... .|+ ....+..+... +.-|.++++. ...++ -...+.
T Consensus 311 s~i~~~i~~~~~ivlGspT-------~~~~~-------~p~---~~~~l~~l~~~~~~~K~~~~FG-SyGWs--g~a~~~ 370 (410)
T 4dik_A 311 SEILKDIPDSEALIFGVST-------YEAEI-------HPL---MRFTLLEIIDKANYEKPVLVFG-VHGWA--PSAERT 370 (410)
T ss_dssp HHHHHHSTTCSEEEEEECC-------TTSSS-------CHH---HHHHHHHHHHHCCCCCEEEEEE-ECCCC--CTTSCC
T ss_pred HHHHHHHHhCCeEEEEeCC-------cCCcC-------CHH---HHHHHHHHHhcccCCCEEEEEE-CCCCC--cHHHHH
Confidence 4445555555444443322 22121 121 23334444333 4446666665 45555 456788
Q ss_pred HHHHHhcCCCeEEEEEeecC
Q 008863 189 LAEALQNVSSSEIQSRLVLP 208 (550)
Q Consensus 189 l~~~l~~~g~~~v~~~~~~~ 208 (550)
+.+.+++.| +++.....+.
T Consensus 371 ~~~~l~~~~-~~~v~~~~~~ 389 (410)
T 4dik_A 371 AGELLKETK-FRILSFTEIK 389 (410)
T ss_dssp HHHHHTTSS-CEEEEEEEEC
T ss_pred HHHHHHHCC-CEEECcEEEE
Confidence 999999999 8887655444
No 354
>4ddd_A Immunogenic protein; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, immune system; 1.90A {Ehrlichia chaffeensis}
Probab=20.81 E-value=66 Score=29.80 Aligned_cols=50 Identities=8% Similarity=-0.075 Sum_probs=38.4
Q ss_pred ccccchHHHHHHHHHh----CCCCCCeEEEecCCChHHHHHhhhcccccEEeeceee
Q 008863 486 RYDGFSIELFRLVVDH----LNYDLPYEFVPHDGVYDDLINGVYDKVNYFNYHDKLL 538 (550)
Q Consensus 486 ~~~GfciDll~~la~~----l~f~~~~~~~~~~g~w~Gmi~el~~~~ad~a~~~~ti 538 (550)
.|..+...|-+.+++. +|.+ ++++. .+...+.+..|..|++|++++..++
T Consensus 44 ~~~~~~~~la~~l~~~~~~~~g~~--v~v~~-~~g~~~~i~~l~~g~~D~~~~~~~~ 97 (327)
T 4ddd_A 44 VYYPIGGSICRFIASDYGKDNKII--CSISS-TTGSVYNLNSIRYSNMDISIVQSDL 97 (327)
T ss_dssp SHHHHHHHHHHHHHHHHGGGTSEE--EEEEC-CCCHHHHHHHHHTTSCSEEEEEHHH
T ss_pred HHHHHHHHHHHHHHhccCCCCCeE--EEEEe-cCcHHHHHHHHHcCCCcEEEECcHH
Confidence 5778888898999887 5665 44443 3557789999999999999987654
No 355
>3kbq_A Protein TA0487; structural genomics, CINA, protein structure initiative, MCS midwest center for structural genomics, unknown function; 2.00A {Thermoplasma acidophilum}
Probab=20.73 E-value=2.7e+02 Score=22.87 Aligned_cols=45 Identities=9% Similarity=0.156 Sum_probs=25.5
Q ss_pred hHHHHHHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcCCCeEEEE
Q 008863 185 KLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIV 237 (550)
Q Consensus 185 ~~~~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~~ii~ 237 (550)
-...+.+.+.+.| +.+.....++. +...+...+++..+ .+|+||.
T Consensus 24 N~~~l~~~L~~~G-~~v~~~~iv~D------d~~~I~~~l~~a~~-~~DlVit 68 (172)
T 3kbq_A 24 NAAFIGNFLTYHG-YQVRRGFVVMD------DLDEIGWAFRVALE-VSDLVVS 68 (172)
T ss_dssp HHHHHHHHHHHTT-CEEEEEEEECS------CHHHHHHHHHHHHH-HCSEEEE
T ss_pred HHHHHHHHHHHCC-CEEEEEEEeCC------CHHHHHHHHHHHHh-cCCEEEE
Confidence 3455666677777 66665555543 23455555555543 3666666
No 356
>2ql3_A Probable transcriptional regulator, LYSR family P; APC7314, rhodococcus RHA1, structural genomics, PSI-2; HET: MSE; 2.05A {Rhodococcus SP}
Probab=20.52 E-value=1.3e+02 Score=24.82 Aligned_cols=45 Identities=2% Similarity=-0.156 Sum_probs=33.2
Q ss_pred cchHHHHHHHHHhCCCCCCeEEEecCCChHHHHHhhhcccccEEeece
Q 008863 489 GFSIELFRLVVDHLNYDLPYEFVPHDGVYDDLINGVYDKVNYFNYHDK 536 (550)
Q Consensus 489 GfciDll~~la~~l~f~~~~~~~~~~g~w~Gmi~el~~~~ad~a~~~~ 536 (550)
.+-.++|.++.+... + .++....+....+...|.+|++|+|+...
T Consensus 18 ~~l~~~l~~f~~~~P-~--i~i~l~~~~~~~l~~~l~~g~~Dl~i~~~ 62 (209)
T 2ql3_A 18 TILPSMLYAFTAEYP-R--ASVEFREDTQNRLRTQLEGGELDVAIVYD 62 (209)
T ss_dssp TTHHHHHHHHHHHCT-T--EEEEEEECCHHHHHHHHHTTSCSEEEEES
T ss_pred hhHHHHHHHHHHHCC-C--ceEEEEECcHHHHHHHHHcCCccEEEEec
Confidence 455688888887653 3 34444456788999999999999999753
No 357
>3iv7_A Alcohol dehydrogenase IV; NP_602249.1, iron-containing alcohol dehydrogenase, structur genomics, joint center for structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum}
Probab=20.44 E-value=75 Score=30.06 Aligned_cols=95 Identities=11% Similarity=0.019 Sum_probs=54.5
Q ss_pred HHHHHHHHHcCCeEEEEEEEcCCCCCcchhHHHHHHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcCCCeEE
Q 008863 156 KCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVF 235 (550)
Q Consensus 156 ~al~~~l~~~~w~~v~ii~~~~~~g~~~~~~~~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~~i 235 (550)
+.+.++++.++.+++.+|++...++ ..+.+.+.++ . . +.+.. +.+.. ..+...+.++.+++.++|.|
T Consensus 26 ~~l~~~l~~~g~~rvliVtd~~~~~----~~~~v~~~L~--~-~-~~f~~-v~~~p----~~~~v~~~~~~~~~~~~D~I 92 (364)
T 3iv7_A 26 AFLKQEVERRGSAKVMVIAGEREMS----IAHKVASEIE--V-A-IWHDE-VVMHV----PIEVAERARAVATDNEIDLL 92 (364)
T ss_dssp HHHHHHHHHHTCSSEEEECCGGGHH----HHHHHTTTSC--C-S-EEECC-CCTTC----BHHHHHHHHHHHHHTTCCEE
T ss_pred HHHHHHHHHcCCCEEEEEECCCHHH----HHHHHHHHcC--C-C-EEEcc-eecCC----CHHHHHHHHHHHHhcCCCEE
Confidence 4577888889999999998765322 3344444443 2 2 22221 22221 45677788888888899988
Q ss_pred EEEcCCHH--HHHHHHHHHHHcCCCCCCEEEEEecc
Q 008863 236 IVLQASLD--MTIHLFTEANRMGLVGKDSVWIVTNT 269 (550)
Q Consensus 236 i~~~~~~~--~~~~il~~a~~~g~~~~~~~~i~~~~ 269 (550)
|- .+.+. ++..++... .+ ..++-|.|..
T Consensus 93 Ia-vGGGs~iD~aK~iA~~--~~---~P~i~IPTTa 122 (364)
T 3iv7_A 93 VC-VGGGSTIGLAKAIAMT--TA---LPIVAIPTTY 122 (364)
T ss_dssp EE-EESHHHHHHHHHHHHH--HC---CCEEEEECSS
T ss_pred EE-eCCcHHHHHHHHHHhc--cC---CCEEEEcCCc
Confidence 87 44443 334444332 22 2345555554
No 358
>2jfn_A Glutamate racemase; cell WALL, isomerase, cell shape, UDP- murnac-Ala, peptidoglycan biosynthesis, peptidoglycan synthesis; HET: GLU UMA; 1.9A {Escherichia coli}
Probab=20.44 E-value=4.6e+02 Score=23.41 Aligned_cols=38 Identities=5% Similarity=0.142 Sum_probs=24.6
Q ss_pred HhhhcCCeEEEEcCCChHHHHHHHHhhccCCccEEecc
Q 008863 91 ELINKEKVKVIAGMETWEETAVVAEIASRVQVPILSFA 128 (550)
Q Consensus 91 ~li~~~~v~aiiG~~~s~~~~~v~~~~~~~~iP~is~~ 128 (550)
.++.+.++.+|+-+-++..+..+..+-+..++|+|...
T Consensus 78 ~ll~~~g~d~IviaCNTas~~~l~~lr~~~~iPVigi~ 115 (285)
T 2jfn_A 78 AVQERYPLALAVVACNTASTVSLPALREKFDFPVVGVV 115 (285)
T ss_dssp HHHHHSCCSEEEECCHHHHHHHHHHHHHHCSSCEECCC
T ss_pred HHHHhCCCCEEEEECccccHHHHHHHHHhCCCCEEehH
Confidence 34444688888865444443455666677899999843
No 359
>3qax_A Probable ABC transporter arginine-binding protein; periplasmic, transport PR; HET: ARG; 2.00A {Chlamydophila pneumoniae} PDB: 3g41_A* 3n26_A*
Probab=20.41 E-value=33 Score=30.17 Aligned_cols=19 Identities=16% Similarity=0.153 Sum_probs=15.0
Q ss_pred HHHHHHHHhhcCCCeEEEE
Q 008863 219 AVRGELKKVQDKQSRVFIV 237 (550)
Q Consensus 219 d~~~~l~~i~~~~~~~ii~ 237 (550)
+....++.+.+.+.|+++.
T Consensus 167 ~~~~~~~~l~~G~vDa~~~ 185 (268)
T 3qax_A 167 STLEVIMEVRYGKSPVAVL 185 (268)
T ss_dssp CHHHHHHHHHTTSSSEEEE
T ss_pred CHHHHHHHHHcCCCCEEEe
Confidence 3456778888889999888
No 360
>2zzv_A ABC transporter, solute-binding protein; periplasmic substrate binding protein, calcium, lactate, trap transporter, transport protein; 1.40A {Thermus thermophilus} PDB: 2zzw_A 2zzx_A
Probab=20.24 E-value=77 Score=29.85 Aligned_cols=49 Identities=14% Similarity=-0.040 Sum_probs=37.0
Q ss_pred HHHHHHHHHhCCCCCCeEEEecC--CChHHHHHhhhcccccEEeeceeeee
Q 008863 492 IELFRLVVDHLNYDLPYEFVPHD--GVYDDLINGVYDKVNYFNYHDKLLFK 540 (550)
Q Consensus 492 iDll~~la~~l~f~~~~~~~~~~--g~w~Gmi~el~~~~ad~a~~~~ti~~ 540 (550)
-.+.+++.+..+=++++++++.. |.+..++..|..|..||++...+...
T Consensus 53 ~~fa~~v~e~t~G~v~i~v~~~g~Lg~~~~~~e~v~~G~id~~~~~~~~~~ 103 (361)
T 2zzv_A 53 QKFTERVKELTDGQLEVQPFPAGAVVGTFDMFDAVKTGVLDGMNPFTLYWA 103 (361)
T ss_dssp HHHHHHHHHHTTTSEEEEEECTTSSSCGGGHHHHHHHTSSSEEECBGGGGT
T ss_pred HHHHHHHHHhcCCeEEEEEeCCCcccCHHHHHHHHHcCceeEEEecccccc
Confidence 35667777777756446666653 68999999999999999988765443
No 361
>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12}
Probab=20.18 E-value=1.9e+02 Score=21.57 Aligned_cols=61 Identities=13% Similarity=0.152 Sum_probs=37.2
Q ss_pred chhHHHHHHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcCCCeEEEEEcCC--HHHHHHHHHHHHHcCC
Q 008863 183 SGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQAS--LDMTIHLFTEANRMGL 257 (550)
Q Consensus 183 ~~~~~~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~~ii~~~~~--~~~~~~il~~a~~~g~ 257 (550)
....+.+...+.+.| ..+.... ... .+ .+..+++..+++|++ +.. ......+++++++..-
T Consensus 11 ~~~~~~l~~~L~~~g-~~v~~~~--~~~-------~~---a~~~~~~~~~dlii~-d~~l~~~~g~~~~~~l~~~~~ 73 (134)
T 3f6c_A 11 PLAIAAIRNLLIKND-IEILAEL--TEG-------GS---AVQRVETLKPDIVII-DVDIPGVNGIQVLETLRKRQY 73 (134)
T ss_dssp HHHHHHHHHHHHHTT-EEEEEEE--SSS-------TT---HHHHHHHHCCSEEEE-ETTCSSSCHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhhCC-cEEEEEc--CCH-------HH---HHHHHHhcCCCEEEE-ecCCCCCChHHHHHHHHhcCC
Confidence 345778888888888 7664222 111 22 334444557899998 643 2345677788877653
No 362
>2qv7_A Diacylglycerol kinase DGKB; alpha-beta domain 1, beta sandwich domain 2, protein-ADP COM transferase; HET: ADP; 2.30A {Staphylococcus aureus} SCOP: e.52.1.2 PDB: 2qvl_A
Probab=20.18 E-value=4.3e+02 Score=24.21 Aligned_cols=77 Identities=12% Similarity=0.027 Sum_probs=48.6
Q ss_pred eEEEEEEEcCCC-CCcchhHHHHHHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcCCCeEEEEEcCCHHHHH
Q 008863 168 RRVAAIYEDNVY-GGDSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTI 246 (550)
Q Consensus 168 ~~v~ii~~~~~~-g~~~~~~~~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~~ii~~~~~~~~~~ 246 (550)
+++.+|+-...- +......+.+.+.+.+.| +.+....+-.. .+.....+++...+.+.||+ .+......
T Consensus 25 ~~i~vI~NP~sg~~~~~~~~~~i~~~L~~~g-~~~~~~~t~~~--------~~a~~~~~~~~~~~~d~vvv-~GGDGTv~ 94 (337)
T 2qv7_A 25 KRARIIYNPTSGKEQFKRELPDALIKLEKAG-YETSAYATEKI--------GDATLEAERAMHENYDVLIA-AGGDGTLN 94 (337)
T ss_dssp EEEEEEECTTSTTSCHHHHHHHHHHHHHHTT-EEEEEEECCST--------THHHHHHHHHTTTTCSEEEE-EECHHHHH
T ss_pred ceEEEEECCCCCCCchHHHHHHHHHHHHHcC-CeEEEEEecCc--------chHHHHHHHHhhcCCCEEEE-EcCchHHH
Confidence 678888865431 100244577888899888 77655432211 24445566666667888888 77777777
Q ss_pred HHHHHHHH
Q 008863 247 HLFTEANR 254 (550)
Q Consensus 247 ~il~~a~~ 254 (550)
.++..+.+
T Consensus 95 ~v~~~l~~ 102 (337)
T 2qv7_A 95 EVVNGIAE 102 (337)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHHh
Confidence 77777744
Done!