BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008864
(550 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RIP|A Chain A, Crystal Structure Of Human Gamma-Tubulin Complex Protein 4
(Gcp4)
Length = 677
Score = 85.9 bits (211), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 111/496 (22%), Positives = 198/496 (39%), Gaps = 63/496 (12%)
Query: 5 LEHQFRLG--RLSIQGLWFYCQPMLGSMQAVSAVIHKASANNFTGSAVLNLLQSQAKAMA 62
LE +F LG LSI + ++ +V V+ + + G +L + +
Sbjct: 107 LEQEF-LGDPHLSISHVNYFLDQFQLLFPSVMVVVEQIKSQKIHGCQILETVYKHS--CG 163
Query: 63 GDNTVRSLLEKMTQCASNAYLGILERWVYEGVIDDPYGEFFIAEDKSLLKESLTQDYD-- 120
G VRS LEK+ L W+ G++ D + EFFI + S S + D
Sbjct: 164 GLPPVRSALEKILAVCHGVMYKQLSAWMLHGLLLDQHEEFFIKQGPSSGNVSAQPEEDEE 223
Query: 121 --------AKYWRQ------------------RYSLK-DGIPSFL-ANIAGKILTTGKYL 152
K R+ ++SL+ + +PS++ +A KIL G+ +
Sbjct: 224 DLGIGGLTGKQLRELQDLRLIEEENMLAPSLKQFSLRVEILPSYIPVRVAEKILFVGESV 283
Query: 153 NVMRECGHSAQVPTSENSKLL-----SFGSNHHYL------------ECVKVAYEFASGE 195
+ + V + +L +F + H L + V +
Sbjct: 284 QMFE----NQNVNLTRKGSILKNQEDTFAAELHRLKQQPLFSLVDFEQVVDRIRSTVAEH 339
Query: 196 LLNLIKERYDLMGKLRSIKRYLLLDQGDFLVHFMDIAREELMKQLDEITVEKLQSLLDIA 255
L L+ E DL+G+L+ IK + LL +G+ F+D A+ L +T + +
Sbjct: 340 LWKLMVEESDLLGQLKIIKDFYLLGRGELFQAFIDTAQHMLKTPPTAVTEHDVNVAFQQS 399
Query: 256 LRSTAAAADPCHEDLTCSVERSSLLKRMATLKGVEIKTSSDSVDLEQPVSITGLETFSLS 315
D L ++E + AT S ++ E P S G LS
Sbjct: 400 AHKVLLDDDNLLPLLHLTIEYHGKEHKDAT--QAREGPSRETSPREAPAS--GWAALGLS 455
Query: 316 YKVQWPLSIVISRKALTKYQMVFRLLFHCKHVERQLCGAWQVHQGARAFNASGTAISRSS 375
YKVQWPL I+ + L KY +VF+ L + V+ +L W + + ++ T +
Sbjct: 456 YKVQWPLHILFTPAVLEKYNVVFKYLLSVRRVQAELQHCWALQMQRKHLKSNQTDAIKWR 515
Query: 376 LLCRSMLKF-INSLLHYLTFEVLEPNWHVMHNRLQTAKSIDEVIQHHDFFLDKCLRECLL 434
L R+ + F +++L +YL +VLE + + +++ + + + + HD FL L + +
Sbjct: 516 L--RNHMAFLVDNLQYYLQVDVLESQFSQLLHQINSTRDFESIRLAHDHFLSNLLAQSFI 573
Query: 435 HLPDLLKKVERLKSLC 450
L + + + LC
Sbjct: 574 LLKPVFHCLNEILDLC 589
>pdb|3DW8|A Chain A, Structure Of A Protein Phosphatase 2a Holoenzyme With B55
Subunit
pdb|3DW8|D Chain D, Structure Of A Protein Phosphatase 2a Holoenzyme With B55
Subunit
Length = 582
Score = 33.5 bits (75), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 55/244 (22%), Positives = 93/244 (38%), Gaps = 36/244 (14%)
Query: 12 GRLSIQGLWFYCQPMLGSMQAVSAVIHKASAN------NFTGSAVLNLLQSQAKAMAGDN 65
R S GL+ C P + S AV A + + N A + L AK + DN
Sbjct: 136 SRTSACGLFSVCYPRVSS--AVKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDN 193
Query: 66 TVRSLLEKMTQCASNAYLGILERWVYEGVIDDPYGEFFIAED-KSLLKESLTQDYDAKYW 124
++ + AS+ + E ++ + ED ++L+ +L Q + K W
Sbjct: 194 VKSEIIPMFSNLASDEQDSV-RLLAVEACVN--IAQLLPQEDLEALVMPTLRQAAEDKSW 250
Query: 125 RQRYSLKDGIPSFLANIAGKILTTG---KYLNVMRECGHSAQVPTSENSKLLSFGSN--- 178
R RY + D + +I T + N+M++C A+V + + K+ F N
Sbjct: 251 RVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDC--EAEVRAAASHKVKEFCENLSA 308
Query: 179 --------HHYLECVKV----AYEFASGELLNLIKERYDLMGKLRSIKRYLLLDQGDFLV 226
L C+K A + L ++I ++GK +I+ L L FL
Sbjct: 309 DCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPL----FLA 364
Query: 227 HFMD 230
D
Sbjct: 365 QLKD 368
>pdb|2PKG|A Chain A, Structure Of A Complex Between The A Subunit Of Protein
Phosphatase 2a And The Small T Antigen Of Sv40
pdb|2PKG|B Chain B, Structure Of A Complex Between The A Subunit Of Protein
Phosphatase 2a And The Small T Antigen Of Sv40
Length = 580
Score = 33.5 bits (75), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 55/244 (22%), Positives = 93/244 (38%), Gaps = 36/244 (14%)
Query: 12 GRLSIQGLWFYCQPMLGSMQAVSAVIHKASAN------NFTGSAVLNLLQSQAKAMAGDN 65
R S GL+ C P + S AV A + + N A + L AK + DN
Sbjct: 134 SRTSACGLFSVCYPRVSS--AVKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDN 191
Query: 66 TVRSLLEKMTQCASNAYLGILERWVYEGVIDDPYGEFFIAED-KSLLKESLTQDYDAKYW 124
++ + AS+ + E ++ + ED ++L+ +L Q + K W
Sbjct: 192 VKSEIIPMFSNLASDEQDSV-RLLAVEACVN--IAQLLPQEDLEALVMPTLRQAAEDKSW 248
Query: 125 RQRYSLKDGIPSFLANIAGKILTTG---KYLNVMRECGHSAQVPTSENSKLLSFGSN--- 178
R RY + D + +I T + N+M++C A+V + + K+ F N
Sbjct: 249 RVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDC--EAEVRAAASHKVKEFCENLSA 306
Query: 179 --------HHYLECVKV----AYEFASGELLNLIKERYDLMGKLRSIKRYLLLDQGDFLV 226
L C+K A + L ++I ++GK +I+ L L FL
Sbjct: 307 DCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPL----FLA 362
Query: 227 HFMD 230
D
Sbjct: 363 QLKD 366
>pdb|2IE3|A Chain A, Structure Of The Protein Phosphatase 2a Core Enzyme Bound
To Tumor- Inducing Toxins
pdb|2IE4|A Chain A, Structure Of The Protein Phosphatase 2a Core Enzyme Bound
To Okadaic Acid
pdb|2NPP|A Chain A, Structure Of The Protein Phosphatase 2a Holoenzyme
pdb|2NPP|D Chain D, Structure Of The Protein Phosphatase 2a Holoenzyme
pdb|3K7V|A Chain A, Protein Phosphatase 2a Core Complex Bound To
Dinophysistoxin-1
pdb|3K7W|A Chain A, Protein Phosphatase 2a Core Complex Bound To
Dinophysistoxin-2
Length = 589
Score = 33.5 bits (75), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 55/244 (22%), Positives = 93/244 (38%), Gaps = 36/244 (14%)
Query: 12 GRLSIQGLWFYCQPMLGSMQAVSAVIHKASAN------NFTGSAVLNLLQSQAKAMAGDN 65
R S GL+ C P + S AV A + + N A + L AK + DN
Sbjct: 143 SRTSACGLFSVCYPRVSS--AVKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDN 200
Query: 66 TVRSLLEKMTQCASNAYLGILERWVYEGVIDDPYGEFFIAED-KSLLKESLTQDYDAKYW 124
++ + AS+ + E ++ + ED ++L+ +L Q + K W
Sbjct: 201 VKSEIIPMFSNLASDEQDSV-RLLAVEACVN--IAQLLPQEDLEALVMPTLRQAAEDKSW 257
Query: 125 RQRYSLKDGIPSFLANIAGKILTTG---KYLNVMRECGHSAQVPTSENSKLLSFGSN--- 178
R RY + D + +I T + N+M++C A+V + + K+ F N
Sbjct: 258 RVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDC--EAEVRAAASHKVKEFCENLSA 315
Query: 179 --------HHYLECVKV----AYEFASGELLNLIKERYDLMGKLRSIKRYLLLDQGDFLV 226
L C+K A + L ++I ++GK +I+ L L FL
Sbjct: 316 DCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPL----FLA 371
Query: 227 HFMD 230
D
Sbjct: 372 QLKD 375
>pdb|1B3U|A Chain A, Crystal Structure Of Constant Regulatory Domain Of Human
Pp2a, Pr65alpha
pdb|1B3U|B Chain B, Crystal Structure Of Constant Regulatory Domain Of Human
Pp2a, Pr65alpha
Length = 588
Score = 33.1 bits (74), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 55/244 (22%), Positives = 93/244 (38%), Gaps = 36/244 (14%)
Query: 12 GRLSIQGLWFYCQPMLGSMQAVSAVIHKASAN------NFTGSAVLNLLQSQAKAMAGDN 65
R S GL+ C P + S AV A + + N A + L AK + DN
Sbjct: 142 SRTSACGLFSVCYPRVSS--AVKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDN 199
Query: 66 TVRSLLEKMTQCASNAYLGILERWVYEGVIDDPYGEFFIAED-KSLLKESLTQDYDAKYW 124
++ + AS+ + E ++ + ED ++L+ +L Q + K W
Sbjct: 200 VKSEIIPMFSNLASDEQDSV-RLLAVEACVN--IAQLLPQEDLEALVMPTLRQAAEDKSW 256
Query: 125 RQRYSLKDGIPSFLANIAGKILTTG---KYLNVMRECGHSAQVPTSENSKLLSFGSN--- 178
R RY + D + +I T + N+M++C A+V + + K+ F N
Sbjct: 257 RVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDC--EAEVRAAASHKVKEFCENLSA 314
Query: 179 --------HHYLECVKV----AYEFASGELLNLIKERYDLMGKLRSIKRYLLLDQGDFLV 226
L C+K A + L ++I ++GK +I+ L L FL
Sbjct: 315 DCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPL----FLA 370
Query: 227 HFMD 230
D
Sbjct: 371 QLKD 374
>pdb|2IAE|A Chain A, Crystal Structure Of A Protein Phosphatase 2a (Pp2a)
Holoenzyme.
pdb|2IAE|D Chain D, Crystal Structure Of A Protein Phosphatase 2a (Pp2a)
Holoenzyme.
pdb|2PF4|A Chain A, Crystal Structure Of The Full-Length Simian Virus 40 Small
T Antigen Complexed With The Protein Phosphatase 2a
Aalpha Subunit
pdb|2PF4|B Chain B, Crystal Structure Of The Full-Length Simian Virus 40 Small
T Antigen Complexed With The Protein Phosphatase 2a
Aalpha Subunit
pdb|2PF4|C Chain C, Crystal Structure Of The Full-Length Simian Virus 40 Small
T Antigen Complexed With The Protein Phosphatase 2a
Aalpha Subunit
pdb|2PF4|D Chain D, Crystal Structure Of The Full-Length Simian Virus 40 Small
T Antigen Complexed With The Protein Phosphatase 2a
Aalpha Subunit
Length = 589
Score = 33.1 bits (74), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 55/244 (22%), Positives = 93/244 (38%), Gaps = 36/244 (14%)
Query: 12 GRLSIQGLWFYCQPMLGSMQAVSAVIHKASAN------NFTGSAVLNLLQSQAKAMAGDN 65
R S GL+ C P + S AV A + + N A + L AK + DN
Sbjct: 143 SRTSACGLFSVCYPRVSS--AVKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDN 200
Query: 66 TVRSLLEKMTQCASNAYLGILERWVYEGVIDDPYGEFFIAED-KSLLKESLTQDYDAKYW 124
++ + AS+ + E ++ + ED ++L+ +L Q + K W
Sbjct: 201 VKSEIIPMFSNLASDEQDSV-RLLAVEACVN--IAQLLPQEDLEALVMPTLRQAAEDKSW 257
Query: 125 RQRYSLKDGIPSFLANIAGKILTTG---KYLNVMRECGHSAQVPTSENSKLLSFGSN--- 178
R RY + D + +I T + N+M++C A+V + + K+ F N
Sbjct: 258 RVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDC--EAEVRAAASHKVKEFCENLSA 315
Query: 179 --------HHYLECVKV----AYEFASGELLNLIKERYDLMGKLRSIKRYLLLDQGDFLV 226
L C+K A + L ++I ++GK +I+ L L FL
Sbjct: 316 DCRENVIMTQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPL----FLA 371
Query: 227 HFMD 230
D
Sbjct: 372 QLKD 375
>pdb|3FGA|A Chain A, Structural Basis Of Pp2a And Sgo Interaction
Length = 588
Score = 33.1 bits (74), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 55/244 (22%), Positives = 93/244 (38%), Gaps = 36/244 (14%)
Query: 12 GRLSIQGLWFYCQPMLGSMQAVSAVIHKASAN------NFTGSAVLNLLQSQAKAMAGDN 65
R S GL+ C P + S AV A + + N A + L AK + DN
Sbjct: 142 SRTSACGLFSVCYPRVSS--AVKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDN 199
Query: 66 TVRSLLEKMTQCASNAYLGILERWVYEGVIDDPYGEFFIAED-KSLLKESLTQDYDAKYW 124
++ + AS+ + E ++ + ED ++L+ +L Q + K W
Sbjct: 200 VKSEIIPMFSNLASDEQDSV-RLLAVEACVN--IAQLLPQEDLEALVMPTLRQAAEDKSW 256
Query: 125 RQRYSLKDGIPSFLANIAGKILTTG---KYLNVMRECGHSAQVPTSENSKLLSFGSN--- 178
R RY + D + +I T + N+M++C A+V + + K+ F N
Sbjct: 257 RVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDC--EAEVRAAASHKVKEFCENLSA 314
Query: 179 --------HHYLECVKV----AYEFASGELLNLIKERYDLMGKLRSIKRYLLLDQGDFLV 226
L C+K A + L ++I ++GK +I+ L L FL
Sbjct: 315 DCRENVIMTQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPL----FLA 370
Query: 227 HFMD 230
D
Sbjct: 371 QLKD 374
>pdb|2NYL|A Chain A, Crystal Structure Of Protein Phosphatase 2a (Pp2a)
Holoenzyme With The Catalytic Subunit Carboxyl Terminus
Truncated
pdb|2NYL|D Chain D, Crystal Structure Of Protein Phosphatase 2a (Pp2a)
Holoenzyme With The Catalytic Subunit Carboxyl Terminus
Truncated
pdb|2NYM|A Chain A, Crystal Structure Of Protein Phosphatase 2a (Pp2a) With
C-Terminus Truncated Catalytic Subunit
pdb|2NYM|D Chain D, Crystal Structure Of Protein Phosphatase 2a (Pp2a) With
C-Terminus Truncated Catalytic Subunit
Length = 582
Score = 32.0 bits (71), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 54/244 (22%), Positives = 93/244 (38%), Gaps = 36/244 (14%)
Query: 12 GRLSIQGLWFYCQPMLGSMQAVSAVIHKASANNFTGS------AVLNLLQSQAKAMAGDN 65
R S GL+ C P + S AV A + + N + A + L AK + DN
Sbjct: 136 SRTSACGLFSVCYPRVSS--AVKAELRQYFRNLCSDDTPXVRRAAASKLGEFAKVLELDN 193
Query: 66 TVRSLLEKMTQCASNAYLGILERWVYEGVIDDPYGEFFIAED-KSLLKESLTQDYDAKYW 124
++ + AS+ + E ++ + ED ++L+ +L Q + K W
Sbjct: 194 VKSEIIPXFSNLASDEQDSV-RLLAVEACVN--IAQLLPQEDLEALVXPTLRQAAEDKSW 250
Query: 125 RQRYSLKDGIPSFLANIAGKILTTG---KYLNVMRECGHSAQVPTSENSKLLSFGSN--- 178
R RY + D + +I T + N+ ++C A+V + + K+ F N
Sbjct: 251 RVRYXVADKFTELQKAVGPEITKTDLVPAFQNLXKDC--EAEVRAAASHKVKEFCENLSA 308
Query: 179 --------HHYLECVKV----AYEFASGELLNLIKERYDLMGKLRSIKRYLLLDQGDFLV 226
L C+K A + L ++I ++GK +I+ L L FL
Sbjct: 309 DCRENVIXSQILPCIKELVSDANQHVKSALASVIXGLSPILGKDNTIEHLLPL----FLA 364
Query: 227 HFMD 230
D
Sbjct: 365 QLKD 368
>pdb|4H6U|A Chain A, Tubulin Acetyltransferase Mutant
pdb|4H6U|B Chain B, Tubulin Acetyltransferase Mutant
Length = 200
Score = 32.0 bits (71), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 13/51 (25%), Positives = 28/51 (54%)
Query: 169 NSKLLSFGSNHHYLECVKVAYEFASGELLNLIKERYDLMGKLRSIKRYLLL 219
S+L F H +E ++AY+ S + L+ +++RYDL + + +++
Sbjct: 134 GSELFDFMLKHKQVEPAQMAYDRPSPKFLSFLEKRYDLRNSVPQVNNFVVF 184
>pdb|1WY7|A Chain A, Crystal Structure Of A Putative Rna Methyltransferase
Ph1948 From Pyrococcus Horikoshii
pdb|1WY7|B Chain B, Crystal Structure Of A Putative Rna Methyltransferase
Ph1948 From Pyrococcus Horikoshii
pdb|1WY7|C Chain C, Crystal Structure Of A Putative Rna Methyltransferase
Ph1948 From Pyrococcus Horikoshii
pdb|1WY7|D Chain D, Crystal Structure Of A Putative Rna Methyltransferase
Ph1948 From Pyrococcus Horikoshii
Length = 207
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 41/105 (39%), Gaps = 18/105 (17%)
Query: 245 VEKLQSLLDIALRSTAAAADPCHEDLTCSVERSSLLKRMATLKGVEIKTSSDSVDLEQPV 304
V + S +DI + + + H D R LK EI S+ L +P
Sbjct: 106 VSEFNSRVDIVIXNPPFGSQRKHAD------------RPFLLKAFEISDVVYSIHLAKPE 153
Query: 305 SITGLETFSLSYKVQWPLSIVISRKALTKYQMVFRLLFHCKHVER 349
+E FS W V++ + TK ++ + FH K +ER
Sbjct: 154 VRRFIEKFS------WEHGFVVTHRLTTKIEIPLQFFFHRKKLER 192
>pdb|4H6Z|A Chain A, Tubulin Acetyltransferase
pdb|4H6Z|B Chain B, Tubulin Acetyltransferase
Length = 190
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/51 (25%), Positives = 27/51 (52%)
Query: 169 NSKLLSFGSNHHYLECVKVAYEFASGELLNLIKERYDLMGKLRSIKRYLLL 219
S+L F H +E + AY+ S + L+ +++RYDL + + +++
Sbjct: 134 GSELFDFXLKHKQVEPAQXAYDRPSPKFLSFLEKRYDLRNSVPQVNNFVVF 184
>pdb|4HKF|A Chain A, Crystal Structure Of Danio Rerio Mec-17 Catalytic Domain
In Complex With Acetyl-Coa
Length = 191
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/51 (25%), Positives = 27/51 (52%)
Query: 169 NSKLLSFGSNHHYLECVKVAYEFASGELLNLIKERYDLMGKLRSIKRYLLL 219
S+L F H +E + AY+ S + L+ +++RYDL + + +++
Sbjct: 132 GSELFDFXLKHKQVEPAQXAYDRPSPKFLSFLEKRYDLRNSVPQVNNFVVF 182
>pdb|3FY3|A Chain A, Crystal Structure Of Truncated Hemolysin A From P.
Mirabilis
Length = 236
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 39/98 (39%), Gaps = 11/98 (11%)
Query: 153 NVMRECGHSAQVPTSENSKLLSFGSNHHYLECVKVAYEFASGELLNLIKERYDLMGKLRS 212
N + E G T N+ LLS G N + LL+LI R D GK+ +
Sbjct: 132 NPLFENGQLKGYSTLNNTNLLSLGKNG-----------LNTTGLLDLIAPRIDSRGKITA 180
Query: 213 IKRYLLLDQGDFLVHFMDIAREELMKQLDEITVEKLQS 250
+ Q F HF ++ ++ + LD +QS
Sbjct: 181 AEISAFTGQNTFSQHFDILSSQKPVSALDSYFFGSMQS 218
>pdb|3AL0|A Chain A, Crystal Structure Of The Glutamine Transamidosome From
Thermotoga Maritima In The Glutamylation State
Length = 475
Score = 28.9 bits (63), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 56/118 (47%), Gaps = 10/118 (8%)
Query: 413 SIDEVIQHHDF--FLDKCLRECLLHLPDLLKKVERLKSLCLQYAAATQWLIS---SSIDL 467
++ E I HD + + E L L L KVER+K ++Y+ AT ++I+ +S +L
Sbjct: 248 AVPEEIYEHDIEEGVSERFEEALKLLERLGAKVERVKIPHIKYSVATYYVIAPAEASSNL 307
Query: 468 PKLEEPSDGFSGSEKFKR---LKLRSLSQVQKV--MIRDATVTESILKFEREFNNELQ 520
+ + G EK R +K R++ ++V I T T S +E FN ++
Sbjct: 308 ARFDGVKYGLRIKEKGLREMYMKTRNVGFGEEVRRRIMIGTFTLSAAYYEAYFNKAMK 365
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.134 0.389
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,822,557
Number of Sequences: 62578
Number of extensions: 569525
Number of successful extensions: 1525
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 1514
Number of HSP's gapped (non-prelim): 21
length of query: 550
length of database: 14,973,337
effective HSP length: 104
effective length of query: 446
effective length of database: 8,465,225
effective search space: 3775490350
effective search space used: 3775490350
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)