Query 008864
Match_columns 550
No_of_seqs 213 out of 828
Neff 8.9
Searched_HMMs 46136
Date Thu Mar 28 17:32:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008864.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008864hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2001 Gamma-tubulin complex, 100.0 5.6E-87 1.2E-91 678.3 47.4 515 1-528 193-715 (734)
2 KOG2065 Gamma-tubulin ring com 100.0 6.2E-66 1.3E-70 502.2 33.8 498 4-550 111-665 (679)
3 PF04130 Spc97_Spc98: Spc97 / 100.0 3E-58 6.5E-63 501.6 34.9 422 2-433 91-542 (542)
4 KOG2000 Gamma-tubulin complex, 100.0 2.5E-45 5.4E-50 395.2 30.4 414 14-459 321-761 (879)
5 KOG4344 Uncharacterized conser 100.0 2.2E-26 4.8E-31 232.5 24.4 474 47-547 460-1114(1121)
6 PF13060 DUF3921: Protein of u 26.6 1.1E+02 0.0023 21.2 3.3 44 391-434 7-51 (58)
7 PF08673 RsbU_N: Phosphoserine 26.4 2.3E+02 0.0049 22.0 5.6 50 402-454 24-74 (77)
8 KOG2000 Gamma-tubulin complex, 21.9 1.3E+02 0.0029 34.7 5.0 121 306-435 589-711 (879)
9 PLN00032 DNA-directed RNA poly 19.5 1.1E+02 0.0025 23.2 2.6 47 392-439 9-55 (71)
10 PHA02698 hypothetical protein; 17.3 3.1E+02 0.0067 21.0 4.4 36 412-447 41-82 (89)
No 1
>KOG2001 consensus Gamma-tubulin complex, DGRIP84/SPC97 component [Cytoskeleton]
Probab=100.00 E-value=5.6e-87 Score=678.31 Aligned_cols=515 Identities=45% Similarity=0.750 Sum_probs=445.3
Q ss_pred ChhccchhhhcCCCcHHHHHHHhhchHHHHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHH
Q 008864 1 MVAQLEHQFRLGRLSIQGLWFYCQPMLGSMQAVSAVIHKASANNFTGSAVLNLLQSQAKAMAGDNTVRSLLEKMTQCASN 80 (550)
Q Consensus 1 ~i~~le~~~~~~~lsL~~L~~~l~p~~~~l~~L~~i~~~~~~~~~~g~~lL~~L~~~~~~~~g~~~~~~~l~~ll~~~~~ 80 (550)
+|+|+|+|++.+.+||++||++++|+...++.++..++.+..+.++||.+|+.|++++..+.||+..+.++.++++.+++
T Consensus 193 li~qlE~e~R~~~lslq~L~~y~qP~m~~m~~l~~~~~~~~~~~~~gg~vls~l~~~~~~~~Gd~~a~~ll~~l~r~as~ 272 (734)
T KOG2001|consen 193 LISQLEQELRTNRLSLQDLWFYMQPMMRSMRRLAVAATTTVKKVCKGGAVLSLLQSSIKENLGDRSARMLLKKLLRNASQ 272 (734)
T ss_pred HHHHHHHHHHhccccHHHHHHHHhhhHHHHHHHHHHHhhhhccccCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcc
Confidence 58999999999999999999999999999999999998888889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcceecCCCCcceEeeCCcccccccccccchhhhcccccc-ccCCCcchHHHHHHHHHhHHHHHHHHHhc
Q 008864 81 AYLGILERWVYEGVIDDPYGEFFIAEDKSLLKESLTQDYDAKYWRQRYSL-KDGIPSFLANIAGKILTTGKYLNVMRECG 159 (550)
Q Consensus 81 p~~~~l~~Wi~~G~l~D~~~EFFI~~~~~~~~~~~~~~~~~~~W~~~y~l-~~~vP~fl~~~a~~Il~~GK~l~~Lr~~~ 159 (550)
||++|+++|+..|.++|||+||||.++ ..+++.+++|++++||+++|+| +|.+|+|+...|+|||.||||+|++|+|+
T Consensus 273 ~Y~~mLe~Wi~~Gii~Dpy~EFmi~d~-~~~k~~l~ed~~d~YW~~RY~ir~dqiP~fL~~~adkIL~tGKYLNVvReC~ 351 (734)
T KOG2001|consen 273 PYCTMLEEWIYQGIINDPYQEFMIYDN-LITKEDLPEDYTDKYWDQRYTIRKDQIPGFLLSEADKILRTGKYLNVVRECG 351 (734)
T ss_pred hHHHHHHHHHhcccccCchHhHhhhhc-chhhhcCchhhhHHHHHHhheechhhcchHHHHHHHHHHHhhhHHHHHHHhC
Confidence 999999999999999999999999999 6777778889999999999999 89999999999999999999999999999
Q ss_pred CCCCCCCccccccc-cCCCchhHHHHHHHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHhccCCchHHHHHHHHHHHHhc
Q 008864 160 HSAQVPTSENSKLL-SFGSNHHYLECVKVAYEFASGELLNLIKERYDLMGKLRSIKRYLLLDQGDFLVHFMDIAREELMK 238 (550)
Q Consensus 160 ~~~~~p~~e~~~l~-~f~~~~~~~~~I~~~~~~~s~~l~~ll~~~~~L~~hL~~l~~~fLL~~Gdf~~~f~~~~~~~l~~ 238 (550)
+.++.|...+.... ....+..+.+.|.++|..|+..++++++++++|..||+.+|+||||..|||+..|++.+.++|.|
T Consensus 352 ~~v~~p~~~n~~~~~~~~~e~~~~e~I~~ay~~A~~~lL~ll~~e~dL~~hLrslK~YfLldQgdF~~~Fld~~~eEL~K 431 (734)
T KOG2001|consen 352 KIVTIPQSSNEINDPADLMESNHEEYIKKAYEFANEILLKLLFEEYDLVGHLRSLKHYFLLDQGDFFVTFLDKAEEELTK 431 (734)
T ss_pred ccCCCCcchhhhccccccchhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhcccchHHHHHHHHHHHHhc
Confidence 99887765432111 12224789999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccHHHHHHHHHHHHH-hhhccCCCCCCcccceeccccHHHHHhhhhccccccCCCCCCCCCC---CCCcceeEEEe
Q 008864 239 QLDEITVEKLQSLLDIALR-STAAAADPCHEDLTCSVERSSLLKRMATLKGVEIKTSSDSVDLEQP---VSITGLETFSL 314 (550)
Q Consensus 239 ~~~~~~~~~L~~~l~~al~-~s~~~~d~~~~~l~~~~~~~~l~~~l~~~~~l~~~~~~~~~~~~~~---~~~~~~d~l~L 314 (550)
+...+++.+|+++|+.|+| .+.+..||++++++|.+.+.++..+++.+..+....-+ +....+| ..+.|++.+.+
T Consensus 432 ~v~~i~p~kLqsLL~laLr~~s~a~~Dp~k~~L~i~~~~~~L~~ql~~~l~ie~~e~~-ans~~dP~~~l~lsGlE~faf 510 (734)
T KOG2001|consen 432 NVENISPEKLQSLLDLALREQSEAANDPMKEDLKICVDPTDLITQLSHILAIEPEEES-ANSQADPLEHLDLSGLEAFAF 510 (734)
T ss_pred chhhcCHHHHHHHHHHHHHhhhcccCCchhhheeeeecHhhHHHHHHHHHhcCccccc-cccccCcchhccccchhhhee
Confidence 9999999999999999999 77778999999999999999999998876544421111 1112233 67899999999
Q ss_pred eeecCCcceeeeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCch-hhHHHHHHHHHHHHHHHHHHHHHHh
Q 008864 315 SYKVQWPLSIVISRKALTKYQMVFRLLFHCKHVERQLCGAWQVHQGARAFNASG-TAISRSSLLCRSMLKFINSLLHYLT 393 (550)
Q Consensus 315 ~y~v~wPL~lilt~~~l~~Y~~iFr~Ll~lk~~~~~L~~~w~~~~~~~~~~~~~-~~~~~~~~lr~~m~~fv~~l~~Y~~ 393 (550)
+|+|||||++||++++|.|||.|||+++.|||++++|+.+|..++..|..+..+ +..+.++.+|++|++||+++.+|++
T Consensus 511 ~Y~vkwPLSlIIsrkal~kYQmLfR~lf~lkhVerqL~~~W~~~~~~r~~~~~~~q~~r~s~~LR~RMl~fiqsi~~Y~~ 590 (734)
T KOG2001|consen 511 DYEVKWPLSLIISRKALIKYQMLFRYLFYLKHVERQLCETWQSHSKARSSNTKGAQIVRASFLLRQRMLNFIQSIEYYMT 590 (734)
T ss_pred eeccCCceeeeEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999998877666544 3467788999999999999999999
Q ss_pred hhcccccHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCC
Q 008864 394 FEVLEPNWHVMHNRLQTAKSIDEVIQHHDFFLDKCLRECLLHLP-DLLKKVERLKSLCLQYAAATQWLISSSIDLPKLEE 472 (550)
Q Consensus 394 ~~VI~~~~~~~~~~l~~~~~~d~l~~~H~~fL~~i~~~cfL~~~-~l~~~l~~il~~~l~F~~~~~~~~~~~l~~~~~~~ 472 (550)
.+||||+|..|+..+++++++|+|+..|+.|||.|++.|+|+.+ .+.+.+.++..+|+.||..++.+++.. .-++.
T Consensus 591 ~eViEp~W~~l~~~l~~a~~vD~Vl~~he~fld~CLk~ClL~~~~~llk~~~kL~~vCl~f~~~~q~~~~~~---~~~~~ 667 (734)
T KOG2001|consen 591 QEVIEPNWHSLEKCLKNARNVDEVLNEHEGFLDTCLKRCLLTLSPLLLKSFSKLYKVCLMFCSFTQKLTQSD---PTDEE 667 (734)
T ss_pred HHhhcchHHHHHHHhhchhhHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHHHHHhccc---chhhh
Confidence 99999999999999999999999999999999999999999986 789999999999999999999987421 00111
Q ss_pred CCCCCCChhHHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhHHHHhcc
Q 008864 473 PSDGFSGSEKFKRLKLRSLSQVQKVMIRDATVTESILKFEREFNNELQSLGPILSS 528 (550)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~F~~~~~~l~~~L~~ 528 (550)
.+..+ .+.+ . ..+-+.+.+ .-+.+.+-+.+.+..|++|+..|+..|++
T Consensus 668 ~~~~~-~~~~-d--~~~k~~~t~----li~~leei~~~~~~~f~~~l~~L~~rlsk 715 (734)
T KOG2001|consen 668 KNSVG-HPQF-D--EGRKEDDTL----LISKLEEIISNADKNFRDCLKNLLQRLSK 715 (734)
T ss_pred hcccc-ccch-h--hhhhhhhHH----HHHHHHHHHHHhHHHHHHHHHHHHHHccc
Confidence 11111 0111 1 111111111 02234556777999999999999999994
No 2
>KOG2065 consensus Gamma-tubulin ring complex protein [Cytoskeleton]
Probab=100.00 E-value=6.2e-66 Score=502.15 Aligned_cols=498 Identities=21% Similarity=0.341 Sum_probs=393.1
Q ss_pred ccchhhhc-CCCcHHHHHHHhhchHHHHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHH
Q 008864 4 QLEHQFRL-GRLSIQGLWFYCQPMLGSMQAVSAVIHKASANNFTGSAVLNLLQSQAKAMAGDNTVRSLLEKMTQCASNAY 82 (550)
Q Consensus 4 ~le~~~~~-~~lsL~~L~~~l~p~~~~l~~L~~i~~~~~~~~~~g~~lL~~L~~~~~~~~g~~~~~~~l~~ll~~~~~p~ 82 (550)
-||..+.. ...||......+......+..+..+|.++...+.+||+||+.||++ +||.|.+|..+..++..|..++
T Consensus 111 ~lEq~~Lg~~~~sls~V~~~L~~ff~Lfp~~~~vi~eI~~~~irGcqlL~~l~k~---HCg~p~ir~~l~~~l~~~h~vm 187 (679)
T KOG2065|consen 111 RLEQYCLGNERNSLSYVYNALYAFFPLFPFMRNVITEIHVLNIRGCQLLHNLHKQ---HCGHPDIRLELAIKLKPVHNVM 187 (679)
T ss_pred HHHHHHhCCCCchHHHHHHHHHHhhhhhHHHHHHHHHHHhcccchhHHHHHHHHh---ccCCCcHHHHHHHHHhhhHHHH
Confidence 35666665 4889999999999999999999999999998899999999999997 5899999999999999999999
Q ss_pred HHHHHHHHhcceecCCCCcceEeeCCcc--cccccccccchhhh-----------cccccc-----ccCCCcchHH-HHH
Q 008864 83 LGILERWVYEGVIDDPYGEFFIAEDKSL--LKESLTQDYDAKYW-----------RQRYSL-----KDGIPSFLAN-IAG 143 (550)
Q Consensus 83 ~~~l~~Wi~~G~l~D~~~EFFI~~~~~~--~~~~~~~~~~~~~W-----------~~~y~l-----~~~vP~fl~~-~a~ 143 (550)
++++..||.+|.+.|+++||||+..+.. +..+..++.+++.- -.+|.+ -...|.|.+- .+.
T Consensus 188 y~qLaaWml~Gvl~D~H~EFFIK~q~~~~~d~ss~~ee~~e~L~vhsLTgi~l~~l~D~rl~~E~nm~a~~~~~sl~~~s 267 (679)
T KOG2065|consen 188 YSQLAAWMLFGVLDDVHSEFFIKFQPTDAVDGSSFSEEATESLLVHSLTGIALKNLEDYRLQYEVNMSALPGFFSLVLAS 267 (679)
T ss_pred HHHHHHHHHHHhhcccchheEEeccCCCCCCcccCchhhhhhhhhcccchhhhhchhhhhHHHHHhhhccccceeeeccc
Confidence 9999999999999999999999965432 11111111001000 012333 1246777777 889
Q ss_pred HHHHhHHHHHHHHHhcCC-------CCCCCccc---ccccc-----------------CC-----CchhHHHHHHHHHHH
Q 008864 144 KILTTGKYLNVMRECGHS-------AQVPTSEN---SKLLS-----------------FG-----SNHHYLECVKVAYEF 191 (550)
Q Consensus 144 ~Il~~GK~l~~Lr~~~~~-------~~~p~~e~---~~l~~-----------------f~-----~~~~~~~~I~~~~~~ 191 (550)
++|.+|+...+.+..... .+.|..|+ ..+.. .. ....|+..|+..++.
T Consensus 268 ~~l~v~~~~s~~~~~R~~~~i~F~~~~~~~~e~eld~dlt~G~ll~~~Ed~f~aml~dLk~~~~f~~~~fE~vVd~ir~~ 347 (679)
T KOG2065|consen 268 KVLFVGQTVSVFKMGRNVKVINFKTDPLAAKEAELDSDLTYGQLLSGREDEFFAMLVDLKNEDTFNVFRFEKVVDDIRNY 347 (679)
T ss_pred cceeeccchHHHhhccceeeeeccCCchhhHHhhccccchhhhhcCCChHHHHHHHHhhhcCCceeeeeHHHHHHHHHHH
Confidence 999999988887743211 01111111 00000 00 013567889999999
Q ss_pred HHHHHHHHHHhhhcHHHHHHHHHHHHhccCCchHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhhccCCCCCCccc
Q 008864 192 ASGELLNLIKERYDLMGKLRSIKRYLLLDQGDFLVHFMDIAREELMKQLDEITVEKLQSLLDIALRSTAAAADPCHEDLT 271 (550)
Q Consensus 192 ~s~~l~~ll~~~~~L~~hL~~l~~~fLL~~Gdf~~~f~~~~~~~l~~~~~~~~~~~L~~~l~~al~~s~~~~d~~~~~l~ 271 (550)
|+.+||++.+++.+|.+||+++|+|||||+|||++.|++.....|+.|++..+.++++..++.|...+....|.|-+.++
T Consensus 348 va~hLw~l~V~e~DL~gqlk~iKDffLLgrGeffq~F~~~~~~~m~tpp~~~tE~dv~v~FqlaAtkt~~~dDkyl~~~s 427 (679)
T KOG2065|consen 348 VAAHLWELAVNEVDLEGQLKLIKDFFLLGRGEFFQEFCSQMVGTMETPPEERTEKDVTVSFQLAATKTGITDDKYLDKFS 427 (679)
T ss_pred HHHHHHHHHHhHHhHHhHHHHHHHHHHhcccHHHHHHHHHHHHHhhCCchhhcccccchhhhhhhhhccccccccccceE
Confidence 99999999999999999999999999999999999999999999999998888888999999988776666777766666
Q ss_pred ceeccccHHHHHhhhhcccccc-CCCCCCCCCCCCCcceeEEEeeeecCCcceeeeCHHHHHHHHHHHHHHHHHHHHHHH
Q 008864 272 CSVERSSLLKRMATLKGVEIKT-SSDSVDLEQPVSITGLETFSLSYKVQWPLSIVISRKALTKYQMVFRLLFHCKHVERQ 350 (550)
Q Consensus 272 ~~~~~~~l~~~l~~~~~l~~~~-~~~~~~~~~~~~~~~~d~l~L~y~v~wPL~lilt~~~l~~Y~~iFr~Ll~lk~~~~~ 350 (550)
..+.+.+=..+ .|... .++.+......+..|||++.|.|+|.|||+++|||.++++||.||++|+++||+++.
T Consensus 428 L~~~~~grs~~------aD~~~~~tGka~ltsdtsvdGWdAl~L~Y~v~WPl~llFtp~~~e~yn~VF~yLl~irr~Q~E 501 (679)
T KOG2065|consen 428 LICQRSGRSEP------ADTSDFNTGKAFLTSDTSVDGWDALSLKYEVEWPLNLLFTPTTIERYNNVFRYLLIIRRYQYE 501 (679)
T ss_pred EEecccCCCCc------cchhhhccCcccccCCCCccchhhhceeeEeccchheeechhHHHHHHHHHHHHHHHHHHHHH
Confidence 65554320000 01000 011112233567899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhcccc--C--CchhhHHHHHHHHHHHHHHHHHHHHHHhhhcccccHHHHHHHhccCCCHHHHHHHHHHHHH
Q 008864 351 LCGAWQVHQGARAF--N--ASGTAISRSSLLCRSMLKFINSLLHYLTFEVLEPNWHVMHNRLQTAKSIDEVIQHHDFFLD 426 (550)
Q Consensus 351 L~~~w~~~~~~~~~--~--~~~~~~~~~~~lr~~m~~fv~~l~~Y~~~~VI~~~~~~~~~~l~~~~~~d~l~~~H~~fL~ 426 (550)
|+++|...+..+.. + +-+..+ .|++|+.|.+|++|+|+|++.||||++|..++..|+...||+.|+.+|..||.
T Consensus 502 lq~~WA~qm~r~h~~s~q~~d~~~I--~WRlRnhmaFl~~NlQyYiQVDVlESQf~~L~~~I~s~~DFe~i~~aH~~fLs 579 (679)
T KOG2065|consen 502 LQRVWAKQMWRAHSASDQPPDNKII--TWRLRNHMAFLLNNLQYYIQVDVLESQFGILMNVIKSRSDFEVIQRAHTVFLS 579 (679)
T ss_pred HHHHHHHHHHHHHhhccCCCCCccc--hHHHHHHHHHHHhhhheeeeehhHHHHHHHHHHHhcchhhHHHHHHHHHHHHH
Confidence 99999865531111 1 111122 38999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCChhHHHHHHhhhhhhhhhhhhhhhhHHH
Q 008864 427 KCLRECLLHLPDLLKKVERLKSLCLQYAAATQWLISSSIDLPKLEEPSDGFSGSEKFKRLKLRSLSQVQKVMIRDATVTE 506 (550)
Q Consensus 427 ~i~~~cfL~~~~l~~~l~~il~~~l~F~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 506 (550)
+++.+|||...++..++.+|+.+|.+||.++..-. ++ .+...+
T Consensus 580 nllsqsFll~~pV~~~L~~i~~lC~~Fcn~~~Q~~-------~P------------------------------~d~~~~ 622 (679)
T KOG2065|consen 580 NLLSQSFLLNEPVYGTLLKIFGLCEKFCNHMTQTK-------DP------------------------------SDDLED 622 (679)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhccC-------CC------------------------------cccchH
Confidence 99999999999999999999999999998764311 11 111246
Q ss_pred HHHHHHHHHHHHHHhHHHHhcccccccchHHHHHHHHhccCCCC
Q 008864 507 SILKFEREFNNELQSLGPILSSSSQAEPYLTHLAQLVLGVGFDK 550 (550)
Q Consensus 507 ~i~~~~~~F~~~~~~l~~~L~~~~~~~~~~~~l~~ll~rld~n~ 550 (550)
+++.+.+.|.++...|+++|++. ++..+.+.|+|||+|||||+
T Consensus 623 el~~l~e~F~~qs~sL~~iL~sv-k~~q~~~~L~qlLLRLdfN~ 665 (679)
T KOG2065|consen 623 ELDQLNESFGVQSASLIQILVSV-KSAQCLGPLSQLLLRLDFNC 665 (679)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHc-cccccccHHHHHHHHhchhH
Confidence 89999999999999999999996 67889999999999999996
No 3
>PF04130 Spc97_Spc98: Spc97 / Spc98 family; InterPro: IPR007259 Members of this family are spindle pole body (SBP) components such as Spc97, Spc98 and gamma-tubulin. The SPB functions as the microtubule-organising centre in yeast, with the microtubule cytoskeleton playing an essential role in chromosome segregation, cellular organisation and vesicle trafficking in eukaryotic cells. In most cells, the centrosome is the primary microtubule-organising centre that nucleates and organises microtubules. Gamma-tubulin localises to centrosomes and is required for microtubule nucleation. In Saccharomyces cerevisiae, gamma-tubulin forms a stable complex with Spc97 and Spc98 [].; GO: 0000226 microtubule cytoskeleton organization, 0000922 spindle pole, 0005815 microtubule organizing center; PDB: 3RIP_A.
Probab=100.00 E-value=3e-58 Score=501.56 Aligned_cols=422 Identities=30% Similarity=0.581 Sum_probs=288.2
Q ss_pred hhccchhhhc-CCCcHHHHHHHhhchHHHHHHHHHHHHHh----hcCCCchhhHHHHHHHHH-HhhcCCHHHHHHHHHHH
Q 008864 2 VAQLEHQFRL-GRLSIQGLWFYCQPMLGSMQAVSAVIHKA----SANNFTGSAVLNLLQSQA-KAMAGDNTVRSLLEKMT 75 (550)
Q Consensus 2 i~~le~~~~~-~~lsL~~L~~~l~p~~~~l~~L~~i~~~~----~~~~~~g~~lL~~L~~~~-~~~~g~~~~~~~l~~ll 75 (550)
|+++|.++.. +.+||.++...++|+..+++.|++|+..+ ..+..+|+.||+.||+.+ ...+|++..++++..|+
T Consensus 91 l~~le~~~~~~~~~sL~~l~~~l~~~~~~l~~L~~l~~~~~~~~~~~~~~g~~lL~~L~~~~~~~~~g~~~~~~~l~~ll 170 (542)
T PF04130_consen 91 LSELEESILSNGSLSLLQLLAQLRPWFRRLEALADLIQEIIQLSLSQNLRGGQLLSILYERIYHQQSGDPELRKILQRLL 170 (542)
T ss_dssp HHHHHHHHHH-TT--HHHHHHHTHHHHHHHHHHHHHHHHH----HHHT--THHHHHHHHHHH---HS--HHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCcHHHHHHHHHHHHhhcccCCHHHHHHHHHHH
Confidence 5778888866 79999999999999999999999999987 334889999999999987 33589999999999999
Q ss_pred HHHHHHHHHHHHHHHhcceecCCCCcceEeeCCcccccccccccchhhhcccccc-ccCCCcchHH-HHHHHHHhHHHHH
Q 008864 76 QCASNAYLGILERWVYEGVIDDPYGEFFIAEDKSLLKESLTQDYDAKYWRQRYSL-KDGIPSFLAN-IAGKILTTGKYLN 153 (550)
Q Consensus 76 ~~~~~p~~~~l~~Wi~~G~l~D~~~EFFI~~~~~~~~~~~~~~~~~~~W~~~y~l-~~~vP~fl~~-~a~~Il~~GK~l~ 153 (550)
..+++||++++..||.+|.+.||++||||+++++. .....+++|+++|.+ .+.+|.|++. +|++|+.+||+++
T Consensus 171 ~~~~~p~l~~l~~Wl~~G~l~D~~~EFfI~~~~~~-----~~~~~~~~w~~~f~l~~~~~P~fl~~~~a~~Il~~Gk~~~ 245 (542)
T PF04130_consen 171 NRCLQPYLRMLDSWLYRGELDDPYDEFFIQRNKES-----NSESSEDFWDDRFVLRESRVPSFLSKDLAEKILEIGKSLR 245 (542)
T ss_dssp HHHHHHHHHHHHHHHHH-----TTS-SSEEE---------------------EEE-GGGS-TTS-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCccCCCccceeEeecccc-----cCcccchhhccCEEECcccCChhcCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998321 123357899999999 7899999955 9999999999999
Q ss_pred HHHHhcCCCCCCCcccc-----------------ccccCCCchhHHHHHHHHHHHHHHHHHHHHHhhhcHHHHHHHHHHH
Q 008864 154 VMRECGHSAQVPTSENS-----------------KLLSFGSNHHYLECVKVAYEFASGELLNLIKERYDLMGKLRSIKRY 216 (550)
Q Consensus 154 ~Lr~~~~~~~~p~~e~~-----------------~l~~f~~~~~~~~~I~~~~~~~s~~l~~ll~~~~~L~~hL~~l~~~ 216 (550)
+|+.|++.......... ....-.....+.+.|++++..+++.++++++++++|.+||+++|+|
T Consensus 246 lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~l~~~l~~~~~l~~~l~~l~~~ 325 (542)
T PF04130_consen 246 LLRSCNPEHEWCSDQELSSDLCLSDKESSESSSLQPFEPLDQDKLESKIESQYKLVNKSLLDLLFEDYNLLEHLKALRDF 325 (542)
T ss_dssp T------S------TT-SHHH----HHHHHHHHHHT-SS--HHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHH
T ss_pred HHHHhccccccchhccchhhhhhhhhhhhhHHHhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 99999876432111000 0001112256778999999999999999999999999999999999
Q ss_pred HhccCCchHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhhccCCCCCCcccceeccccHHHHHhhhhccccccCCC
Q 008864 217 LLLDQGDFLVHFMDIAREELMKQLDEITVEKLQSLLDIALRSTAAAADPCHEDLTCSVERSSLLKRMATLKGVEIKTSSD 296 (550)
Q Consensus 217 fLL~~Gdf~~~f~~~~~~~l~~~~~~~~~~~L~~~l~~al~~s~~~~d~~~~~l~~~~~~~~l~~~l~~~~~l~~~~~~~ 296 (550)
|||++|||+..|++.+++.+.++..+.+...++..++.+++.......+...... . ........... ..... ...
T Consensus 326 ~Ll~~gdf~~~f~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~--~~~~~-~~~ 400 (542)
T PF04130_consen 326 FLLGDGDFADSFLESLFEKLESPSSRSSDSNLNSILQEALRASSADWSDESSNLR-S-GEISSSTSLSS--NLSSN-DSS 400 (542)
T ss_dssp TT---HHHHHHHHHHHHHHHSS---TTHHHHHHHHHHHHHHHTT---TTSGGGEE-E-----------------------
T ss_pred HHhcCcHHHHHHHHHHHHHhcCCccccchhhHHHHHHHHHHhCccccccchhhhh-h-ccccccccchh--hhhhh-hhh
Confidence 9999999999999999999999888888888888888888765433221100000 0 00000000000 00000 000
Q ss_pred CCCCCCCCCCcceeEEEeeeecCCcceeeeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-cc----CCchhhH
Q 008864 297 SVDLEQPVSITGLETFSLSYKVQWPLSIVISRKALTKYQMVFRLLFHCKHVERQLCGAWQVHQGAR-AF----NASGTAI 371 (550)
Q Consensus 297 ~~~~~~~~~~~~~d~l~L~y~v~wPL~lilt~~~l~~Y~~iFr~Ll~lk~~~~~L~~~w~~~~~~~-~~----~~~~~~~ 371 (550)
......+.+..+|+.+.|+|++||||++|||+++|.+|++||+|||++|++++.|+++|...+..+ .. .......
T Consensus 401 ~~~~~~~~~~~~~~~l~L~y~~~~PL~lilt~~~~~~Y~~IF~~Ll~lk~~~~~L~~~w~~~~~~~~~~~~~~~~~~~~~ 480 (542)
T PF04130_consen 401 SRNSNNSSSLEGWDALTLSYKVPWPLNLILTPSVMEKYNRIFRFLLQLKRAEWALQSVWRQLRRLSRKFGKPDRQSRPQL 480 (542)
T ss_dssp -----------TTTTEEEEE---TTGGGTS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSGGG--------S-SHH
T ss_pred cccccccccccccceeEEEecCCccHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhhhhHHH
Confidence 112244677899999999999999999999999999999999999999999999999999876421 11 1123457
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcccccHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhc
Q 008864 372 SRSSLLCRSMLKFINSLLHYLTFEVLEPNWHVMHNRLQTAKSIDEVIQHHDFFLDKCLRECL 433 (550)
Q Consensus 372 ~~~~~lr~~m~~fv~~l~~Y~~~~VI~~~~~~~~~~l~~~~~~d~l~~~H~~fL~~i~~~cf 433 (550)
++++.+|++|+|||+++++|++.+||++.|.+|.++|+++.|+|+|+++|++||++|+++||
T Consensus 481 ~~~~~lr~~m~~fv~~l~~y~~~~vI~~~~~~f~~~l~~~~~~d~l~~~H~~yL~~i~~~~f 542 (542)
T PF04130_consen 481 RRLQILRHRMQHFVNSLQSYLQFDVIEPSWSEFMEKLEKAKSLDELIEAHDDYLDRILRRCF 542 (542)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHT---HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhhC
Confidence 88899999999999999999999999999999999999999999999999999999999998
No 4
>KOG2000 consensus Gamma-tubulin complex, DGRIP91/SPC98 component [Cytoskeleton]
Probab=100.00 E-value=2.5e-45 Score=395.22 Aligned_cols=414 Identities=28% Similarity=0.460 Sum_probs=355.1
Q ss_pred CcHHHHHHHhhchHHHHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 008864 14 LSIQGLWFYCQPMLGSMQAVSAVIHKASANNFTGSAVLNLLQSQAKAMAGDNTVRSLLEKMTQCASNAYLGILERWVYEG 93 (550)
Q Consensus 14 lsL~~L~~~l~p~~~~l~~L~~i~~~~~~~~~~g~~lL~~L~~~~~~~~g~~~~~~~l~~ll~~~~~p~~~~l~~Wi~~G 93 (550)
++|..++.++......|++++.+++.+. ..+|+.++..++... .+|++.++.++..++...+.||.+++..|+..|
T Consensus 321 ~~l~r~la~~~~~~~rl~i~~~l~e~~~--~~~g~~l~~~~~~f~--~~g~~~i~~i~~~lL~~~~~p~~~~i~~wi~~G 396 (879)
T KOG2000|consen 321 VTLLRLLAWIYEPGIRLQILCKLVEHCQ--VPKGGKLLSAVHEFL--THGDLYVHPIVFSLLHSSCSPYYRMLRNWLLEG 396 (879)
T ss_pred hhHHHHHHHHhhcchhhhHHHHHHHHhc--ccCCCcchHHHHHHH--HhCCCcccHHHHHHhhhcchHHHHHHHHHHHcC
Confidence 6899999999999999999999999997 788999999999986 599999999999999999999999999999999
Q ss_pred eecCCCCcceEeeCCcccccccccccchhhhcccccc-ccCCCcchHH-HHHHHHHhHHHHHHHHHhcCCCCCCCccc--
Q 008864 94 VIDDPYGEFFIAEDKSLLKESLTQDYDAKYWRQRYSL-KDGIPSFLAN-IAGKILTTGKYLNVMRECGHSAQVPTSEN-- 169 (550)
Q Consensus 94 ~l~D~~~EFFI~~~~~~~~~~~~~~~~~~~W~~~y~l-~~~vP~fl~~-~a~~Il~~GK~l~~Lr~~~~~~~~p~~e~-- 169 (550)
.+.|+|+||||.+++.... -..+.+|++.|.+ .+++|+|++. +|.+||.|||++++|+.|+++..|...-.
T Consensus 397 ~l~D~y~EFfV~~~~~~~~-----~~~d~lw~~~~~l~~~~lP~Fi~~~~a~kI~l~GKsinfL~~~c~e~~w~~e~~~~ 471 (879)
T KOG2000|consen 397 ELRDTYGEFFVAENPDPGS-----VKDDRLWHDGYKLRYEMLPSFIPMELAQKILLIGKSINFLRDCCNEQTWSDEIDAK 471 (879)
T ss_pred cccccccceEEeccCCCCc-----cccccccccccccchhhcccccCHHHHHHHHHhhhHHHHHHHhccccccccchhHH
Confidence 9999999999999986421 1246799999999 6999999999 99999999999999999988765422110
Q ss_pred ------c-ccccCCCchhHHHHHHHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHhccCCchHHHHHHHHHHHHhccccc
Q 008864 170 ------S-KLLSFGSNHHYLECVKVAYEFASGELLNLIKERYDLMGKLRSIKRYLLLDQGDFLVHFMDIAREELMKQLDE 242 (550)
Q Consensus 170 ------~-~l~~f~~~~~~~~~I~~~~~~~s~~l~~ll~~~~~L~~hL~~l~~~fLL~~Gdf~~~f~~~~~~~l~~~~~~ 242 (550)
. .-..++....+...|+++|....+++.+++.+.+++.+|+.++|+|.|+|.|||+..+++.+.+.+..|...
T Consensus 472 ~~~~~s~~~~l~~~~~~~l~~~v~~ay~e~inhl~~ll~~~~~l~dh~~a~k~ylllGqgDfid~lme~~~n~l~~p~~t 551 (879)
T KOG2000|consen 472 ASVEESSTRDLEYASDVGLLGSVSEAYSEIVNHLNDILEEVISLLDHNQALKRYLLLGQSDFIDVLMEEKKNILARPRDT 551 (879)
T ss_pred HHHhhhhhhhhccCCChhHHHHHhhhhccchHHHHHHHHHHhhHHHHHHHHHHHHHhccchHHHHHHHhhcchhcCcchh
Confidence 0 112344557788999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHHHhh-hccCCCCCCcccceeccccHHHHHhhhhccccccCCCCCCCCCCCCCcceeEEEeeeecCCc
Q 008864 243 ITVEKLQSLLDIALRST-AAAADPCHEDLTCSVERSSLLKRMATLKGVEIKTSSDSVDLEQPVSITGLETFSLSYKVQWP 321 (550)
Q Consensus 243 ~~~~~L~~~l~~al~~s-~~~~d~~~~~l~~~~~~~~l~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~d~l~L~y~v~wP 321 (550)
+..+.|+..++.|+|.+ +++.||- + ...+ +|++.. .-..+..|||.+.++|.+.-|
T Consensus 552 l~~~~lt~~ldsaiR~s~na~yd~~--~---------vL~R------ld~~~~------~~~~gd~gwdvfsl~y~v~~p 608 (879)
T KOG2000|consen 552 LPEHKLTGVLDSAVRSSLNAQYDDR--D---------VLNR------LDVRVL------KLSHGDDGWDVFSLDYAVDGP 608 (879)
T ss_pred hhHhHHHHHHHHHHhhhhccccCCh--h---------hhhh------hhhHhh------hccCCcccceeeeecceeccc
Confidence 99999999999999998 7766542 1 1111 222221 124567899999999999999
Q ss_pred ceeeeCHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhhh-cc--cc--C----CchhhHHHHHHHHHHHHHHHHHHHHH
Q 008864 322 LSIVISRKALTKYQMVFRLLFHCKHVERQL-CGAWQVHQG-AR--AF--N----ASGTAISRSSLLCRSMLKFINSLLHY 391 (550)
Q Consensus 322 L~lilt~~~l~~Y~~iFr~Ll~lk~~~~~L-~~~w~~~~~-~~--~~--~----~~~~~~~~~~~lr~~m~~fv~~l~~Y 391 (550)
+++++|++++.+|-+||+|||++||+++.| ..+|+..+. .+ .. . .....+.++..+..+|.||+.++++|
T Consensus 609 ~s~v~t~~~~~~ylrif~flwrlkR~e~~L~~~i~k~~m~~~~~~~~~~~~~i~~~~~~~~r~h~~~~E~~~f~sq~q~y 688 (879)
T KOG2000|consen 609 LSLVLTRELMLKYLRVFNFLWKLKRVEFLLELHIWKMLMKDCNVAKRDRLLKIPEISCALHRCHILTNEMNHFISQMQYY 688 (879)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccchhcchHHHHhhhhhhhhHHHHHHHHHHhhhhc
Confidence 999999999999999999999999999999 789998873 11 10 0 11234567788899999999999999
Q ss_pred HhhhcccccHHHHHHHhccCCC-HHHHHHHHHHHHHHHHHHhcCCC-h---HHHHHHHHHHHHHHHHHHHHHH
Q 008864 392 LTFEVLEPNWHVMHNRLQTAKS-IDEVIQHHDFFLDKCLRECLLHL-P---DLLKKVERLKSLCLQYAAATQW 459 (550)
Q Consensus 392 ~~~~VI~~~~~~~~~~l~~~~~-~d~l~~~H~~fL~~i~~~cfL~~-~---~l~~~l~~il~~~l~F~~~~~~ 459 (550)
+..+|||.+|.+|..+++.+.+ .|..+++|+-|++.|.-.|++.+ + .+...+..++..++.+......
T Consensus 689 ~~f~vie~~wk~l~~~~~~a~~~ld~~~eah~~~~~ti~i~~~l~~~~~~~s~~~~l~~l~e~Il~~~~~~~~ 761 (879)
T KOG2000|consen 689 ILFEVIECSWKELSKKMEPARNPLDFQLEAHRPFLDTISIRGILQEKASVESIEHSLSALLELILNLAELQSS 761 (879)
T ss_pred cccchhhcChHHHHHHHhhccCchHHHHhhccccccceeecccccCcccchhhHHhHHHHHHHHhhhhccccc
Confidence 9999999999999999999998 99999999999999999999997 3 3778888888888888876544
No 5
>KOG4344 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.95 E-value=2.2e-26 Score=232.52 Aligned_cols=474 Identities=20% Similarity=0.211 Sum_probs=314.5
Q ss_pred hhhHHHHHHHHHHhh--cCC--HHH-HHHHHHHHHHHHHHHHHHHHHHHhcceecCCCCcceEeeCCccccc--------
Q 008864 47 GSAVLNLLQSQAKAM--AGD--NTV-RSLLEKMTQCASNAYLGILERWVYEGVIDDPYGEFFIAEDKSLLKE-------- 113 (550)
Q Consensus 47 g~~lL~~L~~~~~~~--~g~--~~~-~~~l~~ll~~~~~p~~~~l~~Wi~~G~l~D~~~EFFI~~~~~~~~~-------- 113 (550)
...|++-+++.+..+ .|. +.- ..++..|.-....|+++.+.+|+..|.+.|+..||.|.+..+.-..
T Consensus 460 ardLlnpickaiiaYddrgeadeakntlilFsiefeehfpqLqlldElaedghLddGaaefiiarlknrlvkHrdfqyap 539 (1121)
T KOG4344|consen 460 ARDLLNPICKAIIAYDDRGEADEAKNTLILFSIEFEEHFPQLQLLDELAEDGHLDDGAAEFIIARLKNRLVKHRDFQYAP 539 (1121)
T ss_pred HHHHHHHHHHHHHHhccccccCcccceEEEEEEehhhhhHHHHHHHHHHHhccccccHHHHHHHHHhccccccchhhhcc
Confidence 346899999976543 343 221 2344556778889999999999999999999999999887653100
Q ss_pred -----------ccc--cccchhhhcccccc----ccCCCcchHHHHHHHHHhHHHHHHHHH--hcCCC----------C-
Q 008864 114 -----------SLT--QDYDAKYWRQRYSL----KDGIPSFLANIAGKILTTGKYLNVMRE--CGHSA----------Q- 163 (550)
Q Consensus 114 -----------~~~--~~~~~~~W~~~y~l----~~~vP~fl~~~a~~Il~~GK~l~~Lr~--~~~~~----------~- 163 (550)
+.. .+..+.+|. +-.. ++.+-+|..+.-..|..+||..+.+.+ |..+. +
T Consensus 540 hqklataekfeneekmcdiadassg-raagedhlqefiVeFckeedaniimagkrkqllgnlqcaEddKOGaeafdaeqs 618 (1121)
T KOG4344|consen 540 HQKLATAEKFENEEKMCDIADASSG-RAAGEDHLQEFIVEFCKEEDANIIMAGKRKQLLGNLQCAEDDLCLAEAFDAEQS 618 (1121)
T ss_pred HHHHHHHHHhhhHHHHhhhhccccc-cccChHHHHHHHHHHHHHHHHHHHHhhhHHHhhccccccchhhHHHHhhhhhhc
Confidence 000 000111221 1111 122445666655577889999999884 32211 0
Q ss_pred CC----------------------C---------ccc--ccc--------------------ccCCC----c--------
Q 008864 164 VP----------------------T---------SEN--SKL--------------------LSFGS----N-------- 178 (550)
Q Consensus 164 ~p----------------------~---------~e~--~~l--------------------~~f~~----~-------- 178 (550)
.| . .|. .++ ..|.+ +
T Consensus 619 cpLYqLfLEhalergehgddlcspntLsEmlqankEiqLmklhdeaeshffalddVhcgadaidfadepeedkDfedkfa 698 (1121)
T KOG4344|consen 619 CPLYQLFLEHALERGEHGDDLCSPNTLSEMLQANKEIQLMKLHDEAESHFFALDDVHCGADAIDFADEPEEDKDFEDKFA 698 (1121)
T ss_pred CcHHHHHHHHHHHhccccccccCHHHHHHHHhhccccchhhHHHHHHHhHHHHhhccCcccccchhhCCCccccHHHhhc
Confidence 00 0 000 000 00100 0
Q ss_pred -----------------------hhHHHHHHHH--HHHHHHHHHHHHHhhhcHHHHHHHHHHHHhccCCchHHHHHHHHH
Q 008864 179 -----------------------HHYLECVKVA--YEFASGELLNLIKERYDLMGKLRSIKRYLLLDQGDFLVHFMDIAR 233 (550)
Q Consensus 179 -----------------------~~~~~~I~~~--~~~~s~~l~~ll~~~~~L~~hL~~l~~~fLL~~Gdf~~~f~~~~~ 233 (550)
.-+.+.|+++ +-..+..+|.-+.+++.+.+.|++.+.||++.+||.+..|....+
T Consensus 699 cgdvcvdrsqeirncelFaiflqpclephidkQrerLdccgnLManikKdlelsecLQakreffeaegedlmrdfwlaie 778 (1121)
T KOG4344|consen 699 CGDVCVDRSQEIRNCELFAIFLQPCLEPHIDKQRERLDCCGNLMANIKKDLELSECLQAKREFFEAEGEDLMRDFWLAIE 778 (1121)
T ss_pred cccccccccccceehhhHHHHhhhhhhHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHH
Confidence 1123568888 666789999999999999999999999999999999999999999
Q ss_pred HHHhcccccccHHHHHHHHHHHHHhhhccCC--CCCCcccceeccccHHH-HHhhh-----hc------------ccccc
Q 008864 234 EELMKQLDEITVEKLQSLLDIALRSTAAAAD--PCHEDLTCSVERSSLLK-RMATL-----KG------------VEIKT 293 (550)
Q Consensus 234 ~~l~~~~~~~~~~~L~~~l~~al~~s~~~~d--~~~~~l~~~~~~~~l~~-~l~~~-----~~------------l~~~~ 293 (550)
..+.....+.+...++..|+.|.--. ..+. |+...+.++++..+-.+ .+.++ .. +.+..
T Consensus 779 daIRakckeqnVaekmrfLqeamgle-krYlfvedsnaLfirfEnvdnakkaLgsvltsklcavllphypqlahylhvkl 857 (1121)
T KOG4344|consen 779 DAIRAKCKEQNVAEKMRFLQEAMGLE-KRYLFVEDSNALFIRFENVDNAKKALGSVLTSKLCAVLLPHYPQLAHYLHVKL 857 (1121)
T ss_pred HHHHHHhhHHhHHHHHHHHHHHhhhh-hcccccccccceeEEeecccchhhhcchhhhhhhhhhhcccchhhhhHHHHHH
Confidence 88877777777777777788775311 0111 33444555544211000 00000 00 00000
Q ss_pred CCCCCCCCCCCCCcceeEEEeeee--cCCcceeeeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hh----cc-c
Q 008864 294 SSDSVDLEQPVSITGLETFSLSYK--VQWPLSIVISRKALTKYQMVFRLLFHCKHVERQLCGAWQVH---QG----AR-A 363 (550)
Q Consensus 294 ~~~~~~~~~~~~~~~~d~l~L~y~--v~wPL~lilt~~~l~~Y~~iFr~Ll~lk~~~~~L~~~w~~~---~~----~~-~ 363 (550)
.+.- ....-...+++|++.|+|+ +|||..+|+|+.+|..||.+|+.|+++|++.|.|.++-... +. .| +
T Consensus 858 isqi-nsnsikvveaLdaieLdferpmamhqdiiislacmkdYNqVflLlLkiKWAkwkLdnllfgelvsmaekpRakeg 936 (1121)
T KOG4344|consen 858 ISQI-NSNSIKVVEALDAIELDFERPMAMHQDIIISLACMKDYNQVFLLLLKIKWAKWKLDNLLFGELVSMAEKPRAKEG 936 (1121)
T ss_pred Hhhh-cccchhhhhhhhheeecccCCcccchheEecHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhhcc
Confidence 0000 0011233689999999999 89999999999999999999999999999999999854321 11 11 0
Q ss_pred --------------cCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhcccccHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Q 008864 364 --------------FNASGTAISRSSLLCRSMLKFINSLLHYLTFEVLEPNWHVMHNRLQTAKSIDEVIQHHDFFLDKCL 429 (550)
Q Consensus 364 --------------~~~~~~~~~~~~~lr~~m~~fv~~l~~Y~~~~VI~~~~~~~~~~l~~~~~~d~l~~~H~~fL~~i~ 429 (550)
....+..++|+..+|.+++|||++|+.|++..|+++...+|+.++.+|+|+|+++..|.+||..|.
T Consensus 937 liheqdtvaqfcapkdliglqIhRleilRfkLiffiNnLHahIMeailhStgleFehqieEaKdldeLiiiHdehLatih 1016 (1121)
T KOG4344|consen 937 LIHEQDTVAQFCAPKDLIGLQIHRLEILRFKLIFFINNLHAHIMEAILHSTGLEFEHQIEEAKDLDELIIIHDEHLATIH 1016 (1121)
T ss_pred ccccccccccCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHhhhcCHHHHHHHHHHHHHHHH
Confidence 112356789999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCC--hHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCChhHHHHHHhhhhhhhhhhhhhhhhHHHH
Q 008864 430 RECLLHL--PDLLKKVERLKSLCLQYAAATQWLISSSIDLPKLEEPSDGFSGSEKFKRLKLRSLSQVQKVMIRDATVTES 507 (550)
Q Consensus 430 ~~cfL~~--~~l~~~l~~il~~~l~F~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 507 (550)
..|+|++ +.+..+|.+|+.+++.|+.-|+...+-+ ++..+ -|..+...++ -.+.
T Consensus 1017 dhClLrdefkafkeAidkifhLalmfadeWqtcascm---hagda----------------KOGdesIedd-----eiDd 1072 (1121)
T KOG4344|consen 1017 DHCLLRDEFKAFKEAIDKIFHLALMFADEWQTCASCM---HAGDA----------------LCLDESIEDD-----EIDD 1072 (1121)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHhcccchhhhhh---ccccc----------------hhhhhhhhcc-----cccc
Confidence 9999997 5788899999999999999998765321 21110 0000000000 0011
Q ss_pred HHHHHHHHHHHHHhHHHHhccc--ccccchHHHHHHHHhccC
Q 008864 508 ILKFEREFNNELQSLGPILSSS--SQAEPYLTHLAQLVLGVG 547 (550)
Q Consensus 508 i~~~~~~F~~~~~~l~~~L~~~--~~~~~~~~~l~~ll~rld 547 (550)
-+.-...|.++..+++..++.. ....++...|+-++..=|
T Consensus 1073 setqrrsfencalflVaeiekavcRchfmhadiLalllhagd 1114 (1121)
T KOG4344|consen 1073 SETQRRSFENCALFLVAEIEKAVCRCHFMHADILALLLHAGD 1114 (1121)
T ss_pred hHHHHhHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHhcCc
Confidence 1223355888888888887763 245677777877776543
No 6
>PF13060 DUF3921: Protein of unknown function (DUF3921)
Probab=26.64 E-value=1.1e+02 Score=21.20 Aligned_cols=44 Identities=11% Similarity=0.243 Sum_probs=31.7
Q ss_pred HHhhhcccccHHHHHHHhcc-CCCHHHHHHHHHHHHHHHHHHhcC
Q 008864 391 YLTFEVLEPNWHVMHNRLQT-AKSIDEVIQHHDFFLDKCLRECLL 434 (550)
Q Consensus 391 Y~~~~VI~~~~~~~~~~l~~-~~~~d~l~~~H~~fL~~i~~~cfL 434 (550)
-+-...|+..+.++-+.++- -.-.|++.++.++||..+....++
T Consensus 7 smiqkaih~tydelgkei~~~g~~~d~i~kaqeeylsals~et~i 51 (58)
T PF13060_consen 7 SMIQKAIHRTYDELGKEIDLQGVIADEIQKAQEEYLSALSHETLI 51 (58)
T ss_pred HHHHHHHHHhHHHHhHHhhhcchHHHHHHHHHHHHHHHhhHHHHH
Confidence 34455677778888777763 346899999999999887655443
No 7
>PF08673 RsbU_N: Phosphoserine phosphatase RsbU, N-terminal domain; InterPro: IPR014787 The phosphoserine phosphatase RsbU acts as a positive regulator of the general stress-response factor of Gram-positive organisms, sigma-B. RsbU dephosphorylates rsbV in response to environmental stress conveyed from the rsbXST module. The phosphatase activity of RsbU is stimulated during the stress response by associating with the RsbT kinase. This association leads to the induction of sigmaB activity. The N-terminal domain forms a helix-swapped dimer that is otherwise similar to the KaiA domain dimer. Deletions in the N-terminal domain are deleterious to the activity of RsbU. The C-terminal domain of RsbU is similar to the catalytic domains of PP2C-type phosphatases [].; PDB: 2J6Y_D 2J6Z_A 2J70_A 1W53_A.
Probab=26.38 E-value=2.3e+02 Score=22.04 Aligned_cols=50 Identities=14% Similarity=0.226 Sum_probs=32.0
Q ss_pred HHHHH-HhccCCCHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHH
Q 008864 402 HVMHN-RLQTAKSIDEVIQHHDFFLDKCLRECLLHLPDLLKKVERLKSLCLQYA 454 (550)
Q Consensus 402 ~~~~~-~l~~~~~~d~l~~~H~~fL~~i~~~cfL~~~~l~~~l~~il~~~l~F~ 454 (550)
.+|-+ .|++--++++|++.|..++..+...+ ...+...++=++.+..-|.
T Consensus 24 ~~~~r~~i~~~I~PEeIv~iH~~~v~~l~~~~---~~~v~~sld~LlEvm~~yg 74 (77)
T PF08673_consen 24 QEFGRELIEKDISPEEIVEIHKSAVQELSPSL---PEDVLDSLDFLLEVMIGYG 74 (77)
T ss_dssp HHHHHHHHHTT--HHHHHHHHHHHHHHH-TTS----HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHcccc---HHHHHHHHHHHHHHHHHcC
Confidence 34433 34556689999999999999887666 5566666666666655543
No 8
>KOG2000 consensus Gamma-tubulin complex, DGRIP91/SPC98 component [Cytoskeleton]
Probab=21.92 E-value=1.3e+02 Score=34.65 Aligned_cols=121 Identities=10% Similarity=-0.068 Sum_probs=86.3
Q ss_pred CcceeEEEeeeecCCcceeeeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-h-ccccCCchhhHHHHHHHHHHHHH
Q 008864 306 ITGLETFSLSYKVQWPLSIVISRKALTKYQMVFRLLFHCKHVERQLCGAWQVHQ-G-ARAFNASGTAISRSSLLCRSMLK 383 (550)
Q Consensus 306 ~~~~d~l~L~y~v~wPL~lilt~~~l~~Y~~iFr~Ll~lk~~~~~L~~~w~~~~-~-~~~~~~~~~~~~~~~~lr~~m~~ 383 (550)
..++|.-...|++..|+.-.++.-.- ..+|..+||+.+-.|.+.+.|.... + ++...... .-.-..|..|.|
T Consensus 589 ~~~gd~gwdvfsl~y~v~~p~s~v~t---~~~~~~ylrif~flwrlkR~e~~L~~~i~k~~m~~~---~~~~~~~~~~i~ 662 (879)
T KOG2000|consen 589 LSHGDDGWDVFSLDYAVDGPLSLVLT---RELMLKYLRVFNFLWKLKRVEFLLELHIWKMLMKDC---NVAKRDRLLKIP 662 (879)
T ss_pred ccCCcccceeeeecceecccHHHHhh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh---cccccchhcchH
Confidence 35667778899999999998875433 8999999999999999999999773 2 22111000 002345678899
Q ss_pred HHHHHHHHHhhhcccccHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhcCC
Q 008864 384 FINSLLHYLTFEVLEPNWHVMHNRLQTAKSIDEVIQHHDFFLDKCLRECLLH 435 (550)
Q Consensus 384 fv~~l~~Y~~~~VI~~~~~~~~~~l~~~~~~d~l~~~H~~fL~~i~~~cfL~ 435 (550)
++.+...++...+.|-+| |..+++--..++ +++.|-.++...+..--..
T Consensus 663 ~~~~~~~r~h~~~~E~~~--f~sq~q~y~~f~-vie~~wk~l~~~~~~a~~~ 711 (879)
T KOG2000|consen 663 EISCALHRCHILTNEMNH--FISQMQYYILFE-VIECSWKELSKKMEPARNP 711 (879)
T ss_pred HHHhhhhhhhhHHHHHHH--HHHhhhhccccc-hhhcChHHHHHHHhhccCc
Confidence 999999988887766544 445555444555 8899999998888766653
No 9
>PLN00032 DNA-directed RNA polymerase; Provisional
Probab=19.54 E-value=1.1e+02 Score=23.18 Aligned_cols=47 Identities=21% Similarity=0.338 Sum_probs=33.4
Q ss_pred HhhhcccccHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhcCCChHH
Q 008864 392 LTFEVLEPNWHVMHNRLQTAKSIDEVIQHHDFFLDKCLRECLLHLPDL 439 (550)
Q Consensus 392 ~~~~VI~~~~~~~~~~l~~~~~~d~l~~~H~~fL~~i~~~cfL~~~~l 439 (550)
-...||...|.+|.+.+++-.|..++.+.-. .=.-|.+..||+.-++
T Consensus 9 TCGkvig~~we~y~~~~~~g~~~~~~LD~LG-~~RYCCRRMllsHvdl 55 (71)
T PLN00032 9 TCGKVIGNKWDTYLDLLQADYSEGDALDALG-LVRYCCRRMLMTHVDL 55 (71)
T ss_pred CCCCCcHHHHHHHHHHHhcCCCHHHHHHHhC-chhhhhhhHHHHHHHH
Confidence 3457899999999999988888888766532 2234667777766433
No 10
>PHA02698 hypothetical protein; Provisional
Probab=17.30 E-value=3.1e+02 Score=20.98 Aligned_cols=36 Identities=28% Similarity=0.303 Sum_probs=26.0
Q ss_pred CCHHHHHHHHHHHHHHHH---HHhcCCChH---HHHHHHHHH
Q 008864 412 KSIDEVIQHHDFFLDKCL---RECLLHLPD---LLKKVERLK 447 (550)
Q Consensus 412 ~~~d~l~~~H~~fL~~i~---~~cfL~~~~---l~~~l~~il 447 (550)
.+.+++...-.+||+.|. .-|+|++.. ++.-+..+.
T Consensus 41 CsPEdMs~mLD~FLediq~ksElqLLsqEEMdELl~Eledla 82 (89)
T PHA02698 41 CSPEDMSDMLDNFLEDIQYKSELQLLSQEEMDELLVELEDLA 82 (89)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 489999999999999997 567787644 444444443
Done!