Query 008864
Match_columns 550
No_of_seqs 213 out of 828
Neff 8.9
Searched_HMMs 29240
Date Mon Mar 25 13:30:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008864.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008864hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rip_A Gamma-tubulin complex c 100.0 1E-79 3.4E-84 681.2 40.7 505 1-549 103-651 (677)
2 1w53_A Phosphoserine phosphata 17.5 2.6E+02 0.0089 21.0 5.4 48 403-454 32-81 (84)
3 2j6y_A Phosphoserine phosphata 16.0 4.2E+02 0.014 21.0 7.0 47 408-458 38-85 (111)
4 2wx3_A MRNA-decapping enzyme 1 10.1 2.6E+02 0.0087 18.8 3.0 18 413-430 27-44 (51)
5 4a64_A Cullin-4B, CUL4B, CUL-4 10.0 1.1E+03 0.036 22.5 9.2 73 370-448 269-346 (354)
6 2rpa_A Katanin P60 ATPase-cont 9.7 3.1E+02 0.011 20.2 3.8 36 204-239 10-45 (78)
7 2r28_C Serine/threonine-protei 7.9 3.1E+02 0.011 15.7 2.4 15 141-155 8-22 (26)
8 2jxf_A NS4B(40-69), genome pol 7.8 2.9E+02 0.01 16.1 2.2 14 378-391 12-25 (30)
9 3f4m_A Tumor necrosis factor, 7.5 5.8E+02 0.02 21.7 5.1 36 46-81 11-47 (161)
10 1ef4_A Subunit N, DNA-directed 7.1 2.6E+02 0.0088 19.2 2.2 27 394-420 10-36 (55)
No 1
>3rip_A Gamma-tubulin complex component 4; helix bundles, gamma-tubulin ring complex, gamma-TURC, struc protein; 2.30A {Homo sapiens}
Probab=100.00 E-value=1e-79 Score=681.19 Aligned_cols=505 Identities=22% Similarity=0.352 Sum_probs=406.7
Q ss_pred Chhccchhhhc-CCCcHHHHHHHhhchHHHHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHH
Q 008864 1 MVAQLEHQFRL-GRLSIQGLWFYCQPMLGSMQAVSAVIHKASANNFTGSAVLNLLQSQAKAMAGDNTVRSLLEKMTQCAS 79 (550)
Q Consensus 1 ~i~~le~~~~~-~~lsL~~L~~~l~p~~~~l~~L~~i~~~~~~~~~~g~~lL~~L~~~~~~~~g~~~~~~~l~~ll~~~~ 79 (550)
+|+++|+++.. +.+||.+|+.+++|+..+|+.|+.|+.++..+.++||+||+.||+.+ .+|+|.+++++.+|+..|+
T Consensus 103 ~i~~lE~~~l~~~~~sL~~l~~~l~~~~~~l~~L~~l~~~~~~~~~~G~~lL~~L~~~~--~~Gd~~~~~~~~~Ll~~~~ 180 (677)
T 3rip_A 103 ALLDLEQEFLGDPHLSISHVNYFLDQFQLLFPSVMVVVEQIKSQKIHGCQILETVYKHS--CGGLPPVRSALEKILAVCH 180 (677)
T ss_dssp HHHHHHHHHHHCTTCCHHHHHHHTHHHHHHHHHHHHHHHHHHHHTCCTHHHHHHHHHHH--HSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH--hcCCHHHHHHHHHHHHHHH
Confidence 37899999964 58999999999999999999999999998766899999999999997 5999999999999999999
Q ss_pred HHHHHHHHHHHhcceecCCCCcceEeeCCcccccccc----------------------------cccchhhhcccccc-
Q 008864 80 NAYLGILERWVYEGVIDDPYGEFFIAEDKSLLKESLT----------------------------QDYDAKYWRQRYSL- 130 (550)
Q Consensus 80 ~p~~~~l~~Wi~~G~l~D~~~EFFI~~~~~~~~~~~~----------------------------~~~~~~~W~~~y~l- 130 (550)
+||+++|..||.+|+|.|||+||||++++..++.... ++....+|+.+|+|
T Consensus 181 ~~~~~~L~~Wl~~G~L~Dp~~EFFI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~w~~~y~l~ 260 (677)
T 3rip_A 181 GVMYKQLSAWMLHGLLLDQHEEFFIKQGPSSGNVSAQPEEDEEDLGIGGLTGKQLRELQDLRLIEEENMLAPSLKQFSLR 260 (677)
T ss_dssp HHHHHHHHHHHHHCCCCCTTSCSSEEEC--------------------------------------------CCCCEEEC
T ss_pred HHHHHHHHHHHhCCeeCCCcchheeEeccccccccccccccccccccccccccccchhhhhhcccccccccchhcceeec
Confidence 9999999999999999999999999998654321000 00012479999999
Q ss_pred ccCCCcchHH-HHHHHHHhHHHHHHHHHhcCCCC-----CCCccc------cccccCC--CchhHHHHHHHHHHHHHHHH
Q 008864 131 KDGIPSFLAN-IAGKILTTGKYLNVMRECGHSAQ-----VPTSEN------SKLLSFG--SNHHYLECVKVAYEFASGEL 196 (550)
Q Consensus 131 ~~~vP~fl~~-~a~~Il~~GK~l~~Lr~~~~~~~-----~p~~e~------~~l~~f~--~~~~~~~~I~~~~~~~s~~l 196 (550)
.+++|+|+++ +|+|||.|||++++||+++.... ++..+. ..+...+ +...|...|+++|..+|+.+
T Consensus 261 ~~~lP~Fl~~~~A~kIl~~GKsln~lr~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~~~~~e~~I~~~~~~as~~L 340 (677)
T 3rip_A 261 VEILPSYIPVRVAEKILFVGESVQMFENQNVNLTRKGSILKNQEDTFAAELHRLKQQPLFSLVDFEQVVDRIRSTVAEHL 340 (677)
T ss_dssp GGGSCTTSCHHHHHHHHHHHHHHHTCCC-CCSCC---CTTCSHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHH
T ss_pred HhhCcCccCHHHHHHHHHhhHHHHHHHccCCCCCcccccccchHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHH
Confidence 7899999997 99999999999999999765421 000000 0011110 12468889999999999999
Q ss_pred HHHHHhhhcHHHHHHHHHHHHhccCCchHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhhccCCCCCCcccceecc
Q 008864 197 LNLIKERYDLMGKLRSIKRYLLLDQGDFLVHFMDIAREELMKQLDEITVEKLQSLLDIALRSTAAAADPCHEDLTCSVER 276 (550)
Q Consensus 197 ~~ll~~~~~L~~hL~~l~~~fLL~~Gdf~~~f~~~~~~~l~~~~~~~~~~~L~~~l~~al~~s~~~~d~~~~~l~~~~~~ 276 (550)
+++++++++|.+||+++|+||||++|||+..|++.++++|.+++.+++..+|+..|+.|++.+....+++.+.+.+.+..
T Consensus 341 l~lL~~~~~L~~hL~~Lk~yfLL~~Gdf~~~f~~~~~~~L~~~~~~~~~~~L~~~L~~a~~~~~~~~~~~~~~L~~~i~~ 420 (677)
T 3rip_A 341 WKLMVEESDLLGQLKIIKDFYLLGRGELFQAFIDTAQHMLKTPPTAVTEHDVNVAFQQSAHKVLLDDDNLLPLLHLTIEY 420 (677)
T ss_dssp HHHHHHHSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCCCTTHHHHHHHHHHHHHHHTTCCCTTTGGGEEEEECC
T ss_pred HHHHhhhhHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHHccCCchhhHhcceEEeec
Confidence 99999999999999999999999999999999999999999999999999999999999998766556666666665543
Q ss_pred ccHHHHHhhhhccccccCCCCCCCCCCCCCcceeEEEeeeecCCcceeeeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008864 277 SSLLKRMATLKGVEIKTSSDSVDLEQPVSITGLETFSLSYKVQWPLSIVISRKALTKYQMVFRLLFHCKHVERQLCGAWQ 356 (550)
Q Consensus 277 ~~l~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~d~l~L~y~v~wPL~lilt~~~l~~Y~~iFr~Ll~lk~~~~~L~~~w~ 356 (550)
...... ..-. +....+ ......+.+..|||+|.|+|+|||||++|||+++|.+|++||+|||++||+++.|+++|+
T Consensus 421 ~~~~~~-~~~~--~~~~~~-~~~~~~~~~~~~~d~l~L~Y~v~~PL~liit~~~l~~Y~~iF~~Ll~lkr~~~~L~~~w~ 496 (677)
T 3rip_A 421 HGKEHK-DATQ--AREGPS-RETSPREAPASGWAALGLSYKVQWPLHILFTPAVLEKYNVVFKYLLSVRRVQAELQHCWA 496 (677)
T ss_dssp CC---------------------------CCTTTTEEEEECCCTTGGGTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccc-cccc--cccccc-cccccccCCccchheEEEEEeCCChHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 321100 0000 000000 001122356789999999999999999999999999999999999999999999999999
Q ss_pred HhhhccccCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhcccccHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhcCCC
Q 008864 357 VHQGARAFNASGTAISRSSLLCRSMLKFINSLLHYLTFEVLEPNWHVMHNRLQTAKSIDEVIQHHDFFLDKCLRECLLHL 436 (550)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~lr~~m~~fv~~l~~Y~~~~VI~~~~~~~~~~l~~~~~~d~l~~~H~~fL~~i~~~cfL~~ 436 (550)
.++..+..........+ +.+|++|+|||+++++|++.+||+++|.+|+++++++.|+|+|+++|++||++|+.+|||+.
T Consensus 497 ~~~~~~~~~~~~~~~~~-~~lr~~m~~Fv~~l~~Y~~~~Vie~~w~~~~~~l~~~~~~d~l~~~H~~~L~~i~~~c~L~~ 575 (677)
T 3rip_A 497 LQMQRKHLKSNQTDAIK-WRLRNHMAFLVDNLQYYLQVDVLESQFSQLLHQINSTRDFESIRLAHDHFLSNLLAQSFILL 575 (677)
T ss_dssp HHTSGGGCCSSHHHHHH-HHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHTH
T ss_pred HHHhccccCCCchhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHccCc
Confidence 87754433222223444 78999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCChhHHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHH
Q 008864 437 PDLLKKVERLKSLCLQYAAATQWLISSSIDLPKLEEPSDGFSGSEKFKRLKLRSLSQVQKVMIRDATVTESILKFEREFN 516 (550)
Q Consensus 437 ~~l~~~l~~il~~~l~F~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~F~ 516 (550)
+++.++|.+|+++|++||..+++.. . .. ++...+++++++++|+
T Consensus 576 ~~v~~~l~~il~~~~~F~~~~~~~~------~--~~----------------------------~~~~~~~~~~l~~~F~ 619 (677)
T 3rip_A 576 KPVFHCLNEILDLCHSFCSLVSQNL------G--PL----------------------------DERGAAQLSILVKGFS 619 (677)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCC----------C----------------------------CHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhc------c--cc----------------------------cchhHHHHHHHHHHHH
Confidence 9999999999999999999986410 0 00 1112468999999999
Q ss_pred HHHHhHHHHhcccccccchHHHHHHHHhccCCC
Q 008864 517 NELQSLGPILSSSSQAEPYLTHLAQLVLGVGFD 549 (550)
Q Consensus 517 ~~~~~l~~~L~~~~~~~~~~~~l~~ll~rld~n 549 (550)
+++..|+++|++++ +.++.++|++||+|||||
T Consensus 620 ~~~~~L~~~l~~l~-~~~~~~~l~~Ll~rLd~N 651 (677)
T 3rip_A 620 RQSSLLFKILSSVR-NHQINSDLAQLLLRLDYN 651 (677)
T ss_dssp HHHHHHHHHHHHHH-HTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh-ccCCchHHHHHHHHhCch
Confidence 99999999999974 356779999999999998
No 2
>1w53_A Phosphoserine phosphatase RSBU; stress, kinase, hydrolase; 1.6A {Bacillus subtilis} SCOP: a.186.1.2
Probab=17.51 E-value=2.6e+02 Score=21.03 Aligned_cols=48 Identities=15% Similarity=0.271 Sum_probs=33.0
Q ss_pred HHHHH-hccCCCHHHHHHHHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHHHHH
Q 008864 403 VMHNR-LQTAKSIDEVIQHHDFFLDKCLRECLLH-LPDLLKKVERLKSLCLQYA 454 (550)
Q Consensus 403 ~~~~~-l~~~~~~d~l~~~H~~fL~~i~~~cfL~-~~~l~~~l~~il~~~l~F~ 454 (550)
.|-+. +++.-.+++++..|..++..+- ++ ...+...++=++.+..-|.
T Consensus 32 ~fs~~~iek~i~PEeiV~iHk~~i~el~----~~l~e~v~~Sfd~L~Evm~gyG 81 (84)
T 1w53_A 32 KFSRKTIEHQIPPEEIISIHRKVLKELY----PSLPEDVFHSLDFLIEVMIGYG 81 (84)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHHC----TTSCHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHcCCCHHHHHHHHHHHHHHhc----CCChHHHHHHHHHHHHHHHHhC
Confidence 44443 3556799999999998877654 44 5677777777766665553
No 3
>2j6y_A Phosphoserine phosphatase RSBU; hydrolase, partner switching, protein phosphatase, RSBT, stress; 1.85A {Bacillus subtilis} PDB: 2j70_A 2j6z_A
Probab=16.00 E-value=4.2e+02 Score=21.04 Aligned_cols=47 Identities=19% Similarity=0.275 Sum_probs=37.1
Q ss_pred hccCCCHHHHHHHHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHHHHHHHHH
Q 008864 408 LQTAKSIDEVIQHHDFFLDKCLRECLLH-LPDLLKKVERLKSLCLQYAAATQ 458 (550)
Q Consensus 408 l~~~~~~d~l~~~H~~fL~~i~~~cfL~-~~~l~~~l~~il~~~l~F~~~~~ 458 (550)
+++.-.+++++..|..++..+ +.+ ...+...++=++.+..-|.-..+
T Consensus 38 iek~I~PEeiV~iHk~~i~~l----~~~l~e~v~~s~d~L~Evm~gyGlayr 85 (111)
T 2j6y_A 38 IEHQIPPEEIISIHRKVLKEL----YPSLPEDVFHSLDFLIEVMIGYGMAYQ 85 (111)
T ss_dssp HHTTCCHHHHHHHHHHHHHHH----CTTSCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHcCCCHHHHHHHHHHHHHHh----CCCChHHHHHHHHHHHHHHHHHhHhHH
Confidence 556679999999999999887 666 56788888888888888876543
No 4
>2wx3_A MRNA-decapping enzyme 1A; structural protein, trimerization module, P-BODY component, asymmetric assembly; 2.31A {Homo sapiens}
Probab=10.11 E-value=2.6e+02 Score=18.84 Aligned_cols=18 Identities=11% Similarity=0.194 Sum_probs=12.3
Q ss_pred CHHHHHHHHHHHHHHHHH
Q 008864 413 SIDEVIQHHDFFLDKCLR 430 (550)
Q Consensus 413 ~~d~l~~~H~~fL~~i~~ 430 (550)
|-+-+...|++||..+.+
T Consensus 27 D~~Fl~~IHeAYl~sl~~ 44 (51)
T 2wx3_A 27 DSSFLSTLHEVYLQVLTK 44 (51)
T ss_dssp CHHHHHHHHHHHHHTTC-
T ss_pred CHHHHHHHHHHHHHHHHH
Confidence 556677788888876653
No 5
>4a64_A Cullin-4B, CUL4B, CUL-4B; cell cycle; 2.57A {Homo sapiens}
Probab=9.97 E-value=1.1e+03 Score=22.53 Aligned_cols=73 Identities=11% Similarity=0.104 Sum_probs=47.1
Q ss_pred hHHHHHHHHH----HHHHHHHHHHHHHhhhcccccHHHHHHHh-ccCCCHHHHHHHHHHHHHHHHHHhcCCChHHHHHHH
Q 008864 370 AISRSSLLCR----SMLKFINSLLHYLTFEVLEPNWHVMHNRL-QTAKSIDEVIQHHDFFLDKCLRECLLHLPDLLKKVE 444 (550)
Q Consensus 370 ~~~~~~~lr~----~m~~fv~~l~~Y~~~~VI~~~~~~~~~~l-~~~~~~d~l~~~H~~fL~~i~~~cfL~~~~l~~~l~ 444 (550)
.+.+++.|-. .+..+...+..|+...+.+. .... +...=+++|++.|+.| +.+...||-.++.+..++.
T Consensus 269 dL~~mY~L~~rv~~gl~~l~~~~~~~I~~~G~~i-----v~~~~~~~~~V~~LL~l~~k~-~~iv~~~F~~d~~f~~al~ 342 (354)
T 4a64_A 269 DLSLLYQLFSRVRGGVQVLLQQWIEYIKAFGSTI-----VINPEKDKTMRQELDDFKDKV-DHIIDICFLKNEKFINAMK 342 (354)
T ss_dssp HHHHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHH-----HHSCCSSSCHHHHHHHHHHHH-HHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHccccccHHHHHHHHHHHHHHHHHHH-----HcCccchHHHHHHHHHHHHHH-HHHHHHHcCCCHHHHHHHH
Confidence 3455554442 34567777777776654321 1111 2234689999999865 6677789999998888888
Q ss_pred HHHH
Q 008864 445 RLKS 448 (550)
Q Consensus 445 ~il~ 448 (550)
+-+.
T Consensus 343 ~af~ 346 (354)
T 4a64_A 343 EAFE 346 (354)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7744
No 6
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=9.74 E-value=3.1e+02 Score=20.24 Aligned_cols=36 Identities=14% Similarity=0.204 Sum_probs=30.9
Q ss_pred hcHHHHHHHHHHHHhccCCchHHHHHHHHHHHHhcc
Q 008864 204 YDLMGKLRSIKRYLLLDQGDFLVHFMDIAREELMKQ 239 (550)
Q Consensus 204 ~~L~~hL~~l~~~fLL~~Gdf~~~f~~~~~~~l~~~ 239 (550)
..+.++++.-|.|-|+|+-|-...|++.+-..+.+-
T Consensus 10 ~~i~e~~k~ARe~Al~GnYdta~~yY~g~~~qI~k~ 45 (78)
T 2rpa_A 10 QMIVENVKLAREYALLGNYDSAMVYYQGVLDQMNKY 45 (78)
T ss_dssp HHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHH
Confidence 457899999999999999999999999887766553
No 7
>2r28_C Serine/threonine-protein phosphatase 2B catalytic subunit alpha isoform; protein-peptide complex, acetylation, calcium, methylation; 1.86A {Homo sapiens} PDB: 2jzi_B
Probab=7.89 E-value=3.1e+02 Score=15.69 Aligned_cols=15 Identities=40% Similarity=0.501 Sum_probs=12.6
Q ss_pred HHHHHHHhHHHHHHH
Q 008864 141 IAGKILTTGKYLNVM 155 (550)
Q Consensus 141 ~a~~Il~~GK~l~~L 155 (550)
+-+||+.+||--++.
T Consensus 8 ir~KI~aigkmsRmf 22 (26)
T 2r28_C 8 IRNKIRAIGKMARVF 22 (26)
T ss_pred HHHHHHHHHHHHHHH
Confidence 678999999988764
No 8
>2jxf_A NS4B(40-69), genome polyprotein; membrane associated segment, acetylation, apoptosis, ATP- binding, capsid protein, cytoplasm, endoplasmic reticulum; NMR {Synthetic}
Probab=7.83 E-value=2.9e+02 Score=16.06 Aligned_cols=14 Identities=21% Similarity=0.446 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHH
Q 008864 378 CRSMLKFINSLLHY 391 (550)
Q Consensus 378 r~~m~~fv~~l~~Y 391 (550)
...|..||+.+||-
T Consensus 12 ~khMwNfvSGIQYL 25 (30)
T 2jxf_A 12 AKHMWNFISGIQYL 25 (30)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 35799999999863
No 9
>3f4m_A Tumor necrosis factor, alpha-induced protein 8- like protein 2; TIPE2, immune homeostasis, tnfaip8, immune system; 1.70A {Homo sapiens}
Probab=7.46 E-value=5.8e+02 Score=21.71 Aligned_cols=36 Identities=19% Similarity=0.264 Sum_probs=25.0
Q ss_pred chhhHHHHHHHHHHhhcCC-HHHHHHHHHHHHHHHHH
Q 008864 46 TGSAVLNLLQSQAKAMAGD-NTVRSLLEKMTQCASNA 81 (550)
Q Consensus 46 ~g~~lL~~L~~~~~~~~g~-~~~~~~l~~ll~~~~~p 81 (550)
.++.||+.||+.+..++|+ ....++...|+..+.+.
T Consensus 11 tsselLD~lyrl~K~~t~nkkeA~kv~KniIKi~vKi 47 (161)
T 3f4m_A 11 TSSEVLDELYRVSKEYTHSRPQAQRVIKDLIKVAIKV 47 (161)
T ss_dssp HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHh
Confidence 5678999999999888886 44555555555554443
No 10
>1ef4_A Subunit N, DNA-directed RNA polymerase; three helix bundle, zinc binding, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus} SCOP: a.4.11.1
Probab=7.14 E-value=2.6e+02 Score=19.22 Aligned_cols=27 Identities=7% Similarity=0.198 Sum_probs=21.5
Q ss_pred hhcccccHHHHHHHhccCCCHHHHHHH
Q 008864 394 FEVLEPNWHVMHNRLQTAKSIDEVIQH 420 (550)
Q Consensus 394 ~~VI~~~~~~~~~~l~~~~~~d~l~~~ 420 (550)
..||...|.++.+.+++-.+..++.+.
T Consensus 10 Gkvi~~~we~y~~~~~~~~~~~~~LD~ 36 (55)
T 1ef4_A 10 GKPVSAYFNEYQRRVADGEDPKDVLDD 36 (55)
T ss_dssp TSCCHHHHHHHHHHHHHTCCHHHHHHH
T ss_pred CCChhHHHHHHHHHHHcCCCHHHHHHH
Confidence 468899999999999887777766543
Done!