Query 008864
Match_columns 550
No_of_seqs 213 out of 828
Neff 8.9
Searched_HMMs 13730
Date Mon Mar 25 13:31:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008864.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/008864hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1rkta2 a.121.1.1 (A:83-205) H 40.1 68 0.005 24.0 9.0 68 26-96 3-70 (123)
2 d2hyja2 a.121.1.1 (A:83-200) P 36.5 73 0.0053 23.2 8.3 67 27-96 4-72 (118)
3 d2i10a2 a.121.1.1 (A:79-194) P 20.2 25 0.0018 26.1 2.4 64 31-97 9-73 (116)
4 d1pb6a2 a.121.1.1 (A:86-211) H 19.0 65 0.0047 24.0 4.8 36 61-96 34-69 (126)
5 d1kxpd3 a.126.1.1 (D:405-473) 16.9 55 0.004 21.6 3.1 41 397-440 7-57 (69)
6 d2id3a2 a.121.1.1 (A:81-203) P 16.8 1.9E+02 0.014 21.1 7.5 61 31-96 12-72 (123)
7 d2g7sa2 a.121.1.1 (A:77-192) P 15.9 1.8E+02 0.013 20.6 8.0 51 43-96 21-71 (116)
8 d1w53a_ a.186.1.2 (A:) Phospho 14.5 1.9E+02 0.014 20.0 5.7 44 407-454 37-81 (84)
9 d2hyec2 a.118.17.1 (C:55-401) 14.4 3.5E+02 0.026 23.4 9.8 64 381-450 279-343 (347)
10 d1ldja2 a.118.17.1 (A:17-410) 10.9 2.7E+02 0.02 24.8 7.7 76 370-451 302-387 (394)
No 1
>d1rkta2 a.121.1.1 (A:83-205) Hypothetical transcriptional regulator YfiR {Bacillus subtilis [TaxId: 1423]}
Probab=40.15 E-value=68 Score=23.96 Aligned_cols=68 Identities=9% Similarity=0.057 Sum_probs=47.7
Q ss_pred hHHHHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcceec
Q 008864 26 MLGSMQAVSAVIHKASANNFTGSAVLNLLQSQAKAMAGDNTVRSLLEKMTQCASNAYLGILERWVYEGVID 96 (550)
Q Consensus 26 ~~~~l~~L~~i~~~~~~~~~~g~~lL~~L~~~~~~~~g~~~~~~~l~~ll~~~~~p~~~~l~~Wi~~G~l~ 96 (550)
|..++.++..+++.+.. .+-.+--..++....-.-||.++..+...+.....-+...|.+++..|.+.
T Consensus 3 w~~~~~~~d~~~~~l~~---~~~~~~~~~~E~~~~a~Rdpeir~~~~~~~~~~~~~l~~~i~~g~~~Ge~~ 70 (123)
T d1rkta2 3 WASISSYLDELTEGLRD---VADTLAPVQFEYLVTAWRNEERRQYLEKRYDLFVERFSRLLQKGIDQGEFQ 70 (123)
T ss_dssp HHHHHHHHHHHHHHTTT---GGGSSHHHHHHHHHGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHHHHh---cCcchHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcC
Confidence 44566777777777752 222233444454433356999999999999998888888888888888763
No 2
>d2hyja2 a.121.1.1 (A:83-200) Putative transcriptional regulator SCO4940 {Streptomyces coelicolor [TaxId: 1902]}
Probab=36.53 E-value=73 Score=23.24 Aligned_cols=67 Identities=16% Similarity=0.069 Sum_probs=47.8
Q ss_pred HHHHHHHHHHH-HHhhcCCC-chhhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcceec
Q 008864 27 LGSMQAVSAVI-HKASANNF-TGSAVLNLLQSQAKAMAGDNTVRSLLEKMTQCASNAYLGILERWVYEGVID 96 (550)
Q Consensus 27 ~~~l~~L~~i~-~~~~~~~~-~g~~lL~~L~~~~~~~~g~~~~~~~l~~ll~~~~~p~~~~l~~Wi~~G~l~ 96 (550)
...|..+.+.. ..+..+.. .||.+.+..-+. ...++.+++.+...+.....-+.+.|..-...|.+.
T Consensus 4 ~~rL~a~~~~~~~~~~~~~~~~GC~~~~~~~E~---~~~~~~ir~~l~~~~~~~~~~l~~~l~~a~~~G~i~ 72 (118)
T d2hyja2 4 LRRLRAVCANSVGYLEEPLLPGGCLLTAALSEY---DGRPGRVRDAVAEVWSRWREQLRADLTAAVDKGELP 72 (118)
T ss_dssp HHHHHHHHHHHHHHHHSCSSTTSCHHHHHHHHH---TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHHHHHHcCCCCCCCChhHhHHHHc---CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 34444444443 33333333 488888887775 367889999999999999999999999999999773
No 3
>d2i10a2 a.121.1.1 (A:79-194) Putative transcriptional regulator RHA1_ro09068 {Rhodococcus sp. [TaxId: 1831]}
Probab=20.21 E-value=25 Score=26.07 Aligned_cols=64 Identities=9% Similarity=0.090 Sum_probs=46.6
Q ss_pred HHHHHHHHHhh-cCCCchhhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcceecC
Q 008864 31 QAVSAVIHKAS-ANNFTGSAVLNLLQSQAKAMAGDNTVRSLLEKMTQCASNAYLGILERWVYEGVIDD 97 (550)
Q Consensus 31 ~~L~~i~~~~~-~~~~~g~~lL~~L~~~~~~~~g~~~~~~~l~~ll~~~~~p~~~~l~~Wi~~G~l~D 97 (550)
..|...++... +...+||-+.+...+. ...++.+++.+...+......+...+..-...|.+.+
T Consensus 9 ~~l~~~i~~~~~~~~p~GCl~~~~~~E~---~~~d~~i~~~l~~~~~~~~~~l~~~l~~a~~~Gel~~ 73 (116)
T d2i10a2 9 DFLTGRVEVFTAPGQPFGCMTVQAGLAS---GEPHHEIVDLLTAAREQMRQTVLDRFEKALADGDLPA 73 (116)
T ss_dssp HHHHHHHHHHC------CCCCSSCBTTT---BCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCT
T ss_pred HHHHHHHHHHcCCCCCCCCHHHHhHhhc---ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 44555555443 2355789888777663 2578999999999999999999999999999999854
No 4
>d1pb6a2 a.121.1.1 (A:86-211) Hypothetical transcriptional regulator YcdC {Escherichia coli [TaxId: 562]}
Probab=18.97 E-value=65 Score=23.99 Aligned_cols=36 Identities=17% Similarity=0.287 Sum_probs=29.0
Q ss_pred hcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcceec
Q 008864 61 MAGDNTVRSLLEKMTQCASNAYLGILERWVYEGVID 96 (550)
Q Consensus 61 ~~g~~~~~~~l~~ll~~~~~p~~~~l~~Wi~~G~l~ 96 (550)
.+|.+.++..+...+..........|..|+..|.+.
T Consensus 34 ~~~~~~l~~~~~~~~~~~~~~~~~il~~g~~~G~~r 69 (126)
T d1pb6a2 34 LAGAPLLMDELTGDLKALIDEKSALIAGWVKSGKLA 69 (126)
T ss_dssp HTTCTTTHHHHHTHHHHHHHHHHHHHHHHHHTTSSC
T ss_pred hcCCchhHHHHHHHHHHHHHHHHHHHHHHHHCCCcc
Confidence 356666777778888888888889999999999874
No 5
>d1kxpd3 a.126.1.1 (D:405-473) Vitamin D binding protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=16.89 E-value=55 Score=21.63 Aligned_cols=41 Identities=20% Similarity=0.498 Sum_probs=28.3
Q ss_pred ccccHHHHHHHhcc----------CCCHHHHHHHHHHHHHHHHHHhcCCChHHH
Q 008864 397 LEPNWHVMHNRLQT----------AKSIDEVIQHHDFFLDKCLRECLLHLPDLL 440 (550)
Q Consensus 397 I~~~~~~~~~~l~~----------~~~~d~l~~~H~~fL~~i~~~cfL~~~~l~ 440 (550)
-+..|.+|.++|.+ ...+.++++.|.+|-..| |-+++|+++
T Consensus 7 se~tFte~kkkL~e~lr~k~P~as~~~l~~mVekrsdfASkC---CsiNsPPlY 57 (69)
T d1kxpd3 7 SENTFTEYKKKLAERLKAKLPDATPKELAKLVNKRSDFASNC---CSINSPPLY 57 (69)
T ss_dssp TTSCHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHH---SSTTCCHHH
T ss_pred hhccHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHhHHHHHh---hcCCCCchh
Confidence 34455666666542 347888999999987765 778877764
No 6
>d2id3a2 a.121.1.1 (A:81-203) Putative transcriptional regulator SCO5951 {Streptomyces coelicolor [TaxId: 1902]}
Probab=16.79 E-value=1.9e+02 Score=21.13 Aligned_cols=61 Identities=10% Similarity=0.164 Sum_probs=43.5
Q ss_pred HHHHHHHHHhhcCCCchhhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcceec
Q 008864 31 QAVSAVIHKASANNFTGSAVLNLLQSQAKAMAGDNTVRSLLEKMTQCASNAYLGILERWVYEGVID 96 (550)
Q Consensus 31 ~~L~~i~~~~~~~~~~g~~lL~~L~~~~~~~~g~~~~~~~l~~ll~~~~~p~~~~l~~Wi~~G~l~ 96 (550)
..+..+...+. ...|+.++-.+...+ ..+|.....+..++...-.-+-..+...+..|++.
T Consensus 12 ~~l~~~~~~l~--~p~~~~~~~~l~ae~---~~~p~l~~~~~~~~~~r~~~~~~il~rA~~RGEl~ 72 (123)
T d2id3a2 12 ANARLVVRTLD--DPRQGRLFRALIAAS---LCNEQAAEALHRFYAVRVDEWAGCVRDAVARGEVP 72 (123)
T ss_dssp HHHHHHHHHHH--SHHHHHHHHHHHHHH---HHCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHh--CcchHHHHHHHHHHh---cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 34444455444 445666766655543 45778888888888888888888999999999984
No 7
>d2g7sa2 a.121.1.1 (A:77-192) Putative transcriptional regulator Atu0279 {Agrobacterium tumefaciens [TaxId: 358]}
Probab=15.87 E-value=1.8e+02 Score=20.59 Aligned_cols=51 Identities=16% Similarity=0.033 Sum_probs=36.9
Q ss_pred CCCchhhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcceec
Q 008864 43 NNFTGSAVLNLLQSQAKAMAGDNTVRSLLEKMTQCASNAYLGILERWVYEGVID 96 (550)
Q Consensus 43 ~~~~g~~lL~~L~~~~~~~~g~~~~~~~l~~ll~~~~~p~~~~l~~Wi~~G~l~ 96 (550)
...+||.+-+.-.+.. .-++.+++.+...+.....-+-+.+..-...|.+.
T Consensus 21 ~~~~gCl~~~~a~E~~---~~~~~v~~~~~~~~~~~~~~l~~~l~~a~~~g~~~ 71 (116)
T d2g7sa2 21 ATHPFCVCALLASEIP---VLPETVVLEVRAHFRSLSDWLTAVLERGIAQGRLV 71 (116)
T ss_dssp CSSCSCHHHHHHTTGG---GSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCBC
T ss_pred CCCCCCHHHHHHHhhc---cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 3556887777666642 56788888888887777777777777777777664
No 8
>d1w53a_ a.186.1.2 (A:) Phosphoserine phosphatase RsbU, N-terminal domain {Bacillus subtilis [TaxId: 1423]}
Probab=14.46 E-value=1.9e+02 Score=20.03 Aligned_cols=44 Identities=16% Similarity=0.273 Sum_probs=32.3
Q ss_pred HhccCCCHHHHHHHHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHHHHH
Q 008864 407 RLQTAKSIDEVIQHHDFFLDKCLRECLLH-LPDLLKKVERLKSLCLQYA 454 (550)
Q Consensus 407 ~l~~~~~~d~l~~~H~~fL~~i~~~cfL~-~~~l~~~l~~il~~~l~F~ 454 (550)
.|++--++++|++.|..++..+ ..+ ...+...++=++.+..-|.
T Consensus 37 ~iek~IsPEeIV~iHk~~l~el----~~~~~e~v~~Sfd~LlEVm~gyG 81 (84)
T d1w53a_ 37 TIEHQIPPEEIISIHRKVLKEL----YPSLPEDVFHSLDFLIEVMIGYG 81 (84)
T ss_dssp HHHTTCCHHHHHHHHHHHHHHH----CTTSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHHHHHHHH----CCCChHHHHHHHHHHHHHHHHcC
Confidence 4566679999999999888765 444 4677777777777766554
No 9
>d2hyec2 a.118.17.1 (C:55-401) Cullin-4A {Human (Homo sapiens) [TaxId: 9606]}
Probab=14.38 E-value=3.5e+02 Score=23.41 Aligned_cols=64 Identities=6% Similarity=0.108 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHhhhcccccHHHHHHHh-ccCCCHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHH
Q 008864 381 MLKFINSLLHYLTFEVLEPNWHVMHNRL-QTAKSIDEVIQHHDFFLDKCLRECLLHLPDLLKKVERLKSLC 450 (550)
Q Consensus 381 m~~fv~~l~~Y~~~~VI~~~~~~~~~~l-~~~~~~d~l~~~H~~fL~~i~~~cfL~~~~l~~~l~~il~~~ 450 (550)
+..+...+..|+...+-+. .... +...=+++|+..|+. .+.+...||-.++.+.+++.+-+.-+
T Consensus 279 ~~~l~~~f~~~i~~~G~~~-----v~~~~~~~~~V~~ll~l~~k-~~~li~~~F~~d~~f~~~l~~af~~~ 343 (347)
T d2hyec2 279 QQALLQHWSEYIKTFGTAI-----VINPEKDKDMVQDLLDFKDK-VDHVIEVCFQKNERFVNLMKESFETF 343 (347)
T ss_dssp HHHHHHHHHHHHHHHHHHH-----HSCGGGTTTHHHHHHHHHHH-HHHHHHTTTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH-----HhCcccchHHHHHHHHHHHH-HHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 4556666777766554211 0111 112347889999986 56778899999998888888876644
No 10
>d1ldja2 a.118.17.1 (A:17-410) Cullin homolog 1, Cul-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=10.85 E-value=2.7e+02 Score=24.83 Aligned_cols=76 Identities=9% Similarity=0.087 Sum_probs=48.1
Q ss_pred hHHHHHHHHHH----HHHHHHHHHHHHhhhcccccHHHHHHHhccC--C----CHHHHHHHHHHHHHHHHHHhcCCChHH
Q 008864 370 AISRSSLLCRS----MLKFINSLLHYLTFEVLEPNWHVMHNRLQTA--K----SIDEVIQHHDFFLDKCLRECLLHLPDL 439 (550)
Q Consensus 370 ~~~~~~~lr~~----m~~fv~~l~~Y~~~~VI~~~~~~~~~~l~~~--~----~~d~l~~~H~~fL~~i~~~cfL~~~~l 439 (550)
.+.+++.|-.+ +..+...+..|+...+.+ ......+. . =+++|++.|+. .+.+...||-.++.+
T Consensus 302 ~L~~lY~L~~rv~~~~~~l~~~~~~~I~~~G~~-----~i~~~~~~~~~~~~~~V~~ll~l~~~-~~~ii~~~F~~d~~f 375 (394)
T d1ldja2 302 DLGRMYNLVSRIQDGLGELKKLLETHIHNQGLA-----AIEKCGEAALNDPKMYVQTVLDVHKK-YNALVMSAFNNDAGF 375 (394)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHH-----HHHHHTTSGGGCHHHHHHHHHHHHHH-HHHHHHTTTTTCHHH
T ss_pred HHHHHHHHHhhccchHHHHHHHHHHHHHHHHHH-----HHHhhhhcccCChHHHHHHHHHHHHH-HHHHHHHHcCCCHHH
Confidence 45555544433 456667777776665422 22222211 1 16778888875 678889999999988
Q ss_pred HHHHHHHHHHHH
Q 008864 440 LKKVERLKSLCL 451 (550)
Q Consensus 440 ~~~l~~il~~~l 451 (550)
..++.+-+.-++
T Consensus 376 ~~~l~~af~~fi 387 (394)
T d1ldja2 376 VAALDKACGRFI 387 (394)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 888888765443
Done!