Query 008865
Match_columns 550
No_of_seqs 93 out of 104
Neff 5.0
Searched_HMMs 46136
Date Thu Mar 28 17:33:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008865.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008865hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05918 API5: Apoptosis inhib 100.0 3E-163 7E-168 1320.2 37.5 535 10-550 1-556 (556)
2 KOG2213 Apoptosis inhibitor 5/ 100.0 6E-118 1E-122 917.2 37.4 398 9-477 2-400 (460)
3 KOG2213 Apoptosis inhibitor 5/ 98.9 7.2E-10 1.6E-14 116.8 4.2 299 93-472 123-435 (460)
4 PF05918 API5: Apoptosis inhib 98.8 4E-06 8.7E-11 93.4 29.0 375 30-465 57-463 (556)
5 PF01602 Adaptin_N: Adaptin N 97.9 0.0012 2.6E-08 71.8 21.2 281 41-363 89-375 (526)
6 PF10508 Proteasom_PSMB: Prote 97.8 0.012 2.7E-07 65.3 27.4 319 31-368 75-430 (503)
7 PF12717 Cnd1: non-SMC mitotic 97.7 0.0011 2.4E-08 63.4 14.9 162 46-215 3-176 (178)
8 PTZ00429 beta-adaptin; Provisi 97.6 0.036 7.9E-07 64.6 27.1 103 34-138 70-173 (746)
9 PF01602 Adaptin_N: Adaptin N 96.6 0.12 2.6E-06 56.3 18.3 251 32-309 42-297 (526)
10 PF13646 HEAT_2: HEAT repeats; 96.5 0.01 2.2E-07 49.0 7.2 75 43-129 12-87 (88)
11 PTZ00429 beta-adaptin; Provisi 96.5 1 2.2E-05 52.9 25.5 284 54-365 21-334 (746)
12 KOG3973 Uncharacterized conser 96.4 0.67 1.5E-05 49.5 21.1 26 524-549 356-384 (465)
13 KOG1020 Sister chromatid cohes 96.3 0.29 6.3E-06 60.2 20.3 116 30-146 853-978 (1692)
14 PF10363 DUF2435: Protein of u 96.2 0.018 4E-07 50.3 7.4 83 67-149 2-87 (92)
15 cd00020 ARM Armadillo/beta-cat 96.2 0.017 3.6E-07 49.4 6.9 98 67-169 6-116 (120)
16 PRK09687 putative lyase; Provi 96.1 0.089 1.9E-06 54.4 13.2 129 30-167 52-182 (280)
17 PF12717 Cnd1: non-SMC mitotic 96.0 0.072 1.6E-06 51.1 10.9 89 81-174 1-93 (178)
18 PF13646 HEAT_2: HEAT repeats; 95.9 0.031 6.8E-07 46.1 7.1 84 70-166 1-85 (88)
19 PRK09687 putative lyase; Provi 95.8 0.11 2.3E-06 53.8 12.1 126 32-169 90-217 (280)
20 KOG1058 Vesicle coat complex C 95.6 0.63 1.4E-05 54.0 17.8 250 62-365 128-396 (948)
21 KOG1061 Vesicle coat complex A 95.2 1.9 4.1E-05 50.2 20.2 115 34-150 51-170 (734)
22 cd00020 ARM Armadillo/beta-cat 95.0 0.14 3.1E-06 43.5 8.3 90 43-132 19-118 (120)
23 PF14500 MMS19_N: Dos2-interac 94.9 1.5 3.3E-05 45.1 16.8 226 78-329 9-258 (262)
24 PLN03200 cellulose synthase-in 94.5 1.3 2.8E-05 57.0 18.0 116 34-149 448-574 (2102)
25 KOG3973 Uncharacterized conser 94.5 0.52 1.1E-05 50.3 12.5 18 389-406 212-229 (465)
26 KOG0921 Dosage compensation co 94.5 0.045 9.7E-07 64.1 4.9 25 60-84 676-700 (1282)
27 KOG2171 Karyopherin (importin) 93.4 3 6.5E-05 50.4 17.3 141 29-170 115-275 (1075)
28 PRK13800 putative oxidoreducta 92.5 2.2 4.7E-05 51.0 14.8 78 43-131 633-710 (897)
29 PF12348 CLASP_N: CLASP N term 92.0 0.82 1.8E-05 44.6 8.8 162 29-204 23-192 (228)
30 PF10508 Proteasom_PSMB: Prote 92.0 25 0.00053 39.5 23.2 122 43-170 50-186 (503)
31 PRK13800 putative oxidoreducta 91.8 0.6 1.3E-05 55.7 9.0 90 66-169 619-709 (897)
32 PLN03200 cellulose synthase-in 91.6 2.7 5.8E-05 54.3 14.6 130 33-167 610-758 (2102)
33 KOG1061 Vesicle coat complex A 91.5 4 8.7E-05 47.6 14.6 313 33-368 69-426 (734)
34 KOG2274 Predicted importin 9 [ 91.4 39 0.00085 40.7 23.4 91 50-140 469-565 (1005)
35 KOG0921 Dosage compensation co 91.1 0.27 5.8E-06 58.0 5.0 10 404-413 1096-1105(1282)
36 KOG1059 Vesicle coat complex A 90.9 4.7 0.0001 47.0 14.4 236 63-331 139-381 (877)
37 PF01603 B56: Protein phosphat 90.5 6.2 0.00013 43.1 14.5 187 101-352 128-321 (409)
38 PF02985 HEAT: HEAT repeat; I 90.1 0.15 3.3E-06 35.4 1.1 28 70-97 2-29 (31)
39 KOG0212 Uncharacterized conser 89.6 7.6 0.00017 44.3 14.3 143 31-180 124-286 (675)
40 KOG2259 Uncharacterized conser 88.6 23 0.0005 41.3 17.3 169 72-259 377-550 (823)
41 PF13513 HEAT_EZ: HEAT-like re 88.3 0.73 1.6E-05 35.3 4.0 49 83-131 2-54 (55)
42 COG5096 Vesicle coat complex, 88.2 33 0.00072 40.7 18.8 96 43-140 67-162 (757)
43 PF13001 Ecm29: Proteasome sta 88.1 3 6.4E-05 46.7 10.1 131 5-135 268-444 (501)
44 KOG1059 Vesicle coat complex A 87.3 24 0.00051 41.6 16.5 75 75-149 306-381 (877)
45 cd06561 AlkD_like A new struct 87.1 3.3 7.1E-05 39.5 8.6 115 29-149 71-185 (197)
46 KOG2259 Uncharacterized conser 87.1 20 0.00043 41.8 15.7 49 50-98 180-228 (823)
47 PF12755 Vac14_Fab1_bd: Vacuol 86.3 1.3 2.9E-05 39.0 4.9 67 67-134 26-96 (97)
48 COG5096 Vesicle coat complex, 85.8 24 0.00052 41.8 16.0 102 34-138 76-196 (757)
49 KOG2945 Predicted RNA-binding 84.5 0.56 1.2E-05 50.5 2.0 31 515-547 307-341 (365)
50 PF05804 KAP: Kinesin-associat 84.2 28 0.00061 41.0 15.6 135 207-361 468-611 (708)
51 PF08713 DNA_alkylation: DNA a 84.1 3.2 7E-05 40.0 7.0 80 67-148 119-198 (213)
52 KOG1062 Vesicle coat complex A 83.6 52 0.0011 39.2 17.1 70 80-149 246-318 (866)
53 smart00543 MIF4G Middle domain 82.4 36 0.00077 31.9 13.2 138 229-400 35-175 (200)
54 KOG3428 Small nuclear ribonucl 81.8 0.8 1.7E-05 41.4 1.6 16 532-548 94-109 (109)
55 KOG2956 CLIP-associating prote 80.4 45 0.00096 37.6 14.5 94 101-194 283-380 (516)
56 smart00638 LPD_N Lipoprotein N 80.3 19 0.00042 40.4 12.3 136 7-142 324-483 (574)
57 KOG2256 Predicted protein invo 80.2 73 0.0016 37.2 16.5 92 55-148 269-370 (661)
58 PF05823 Gp-FAR-1: Nematode fa 80.0 5 0.00011 38.3 6.5 132 185-322 5-152 (154)
59 PF10165 Ric8: Guanine nucleot 79.7 1.1E+02 0.0023 34.1 18.6 182 75-268 39-259 (446)
60 PF04826 Arm_2: Armadillo-like 78.8 11 0.00023 38.8 8.9 130 31-169 11-159 (254)
61 PF02854 MIF4G: MIF4G domain; 77.9 18 0.00038 33.8 9.5 170 194-401 4-185 (209)
62 PF12719 Cnd3: Nuclear condens 77.3 31 0.00068 35.7 11.9 63 76-138 35-97 (298)
63 PF14500 MMS19_N: Dos2-interac 77.2 32 0.00069 35.6 11.8 192 155-366 10-217 (262)
64 PF12348 CLASP_N: CLASP N term 76.9 25 0.00054 34.2 10.6 92 45-137 67-163 (228)
65 KOG0116 RasGAP SH3 binding pro 76.0 4.3 9.3E-05 44.8 5.3 10 455-465 346-355 (419)
66 PF13513 HEAT_EZ: HEAT-like re 75.4 2.5 5.4E-05 32.3 2.4 49 47-95 3-55 (55)
67 KOG3172 Small nuclear ribonucl 75.0 1.7 3.7E-05 39.2 1.6 12 454-465 74-85 (119)
68 PF08506 Cse1: Cse1; InterPro 74.9 34 0.00073 37.2 11.7 55 274-332 300-357 (370)
69 KOG2171 Karyopherin (importin) 74.9 30 0.00065 42.4 12.1 139 67-209 388-536 (1075)
70 TIGR02270 conserved hypothetic 74.7 15 0.00033 40.4 9.1 86 69-169 87-172 (410)
71 PF11698 V-ATPase_H_C: V-ATPas 73.8 5.1 0.00011 36.9 4.4 52 44-95 57-113 (119)
72 cd07064 AlkD_like_1 A new stru 73.0 42 0.0009 33.3 11.0 108 34-147 85-192 (208)
73 KOG0116 RasGAP SH3 binding pro 71.9 4.7 0.0001 44.5 4.4 9 530-538 396-404 (419)
74 KOG2160 Armadillo/beta-catenin 71.4 1.2E+02 0.0025 33.0 14.5 104 13-117 106-221 (342)
75 KOG1943 Beta-tubulin folding c 71.0 32 0.00068 42.1 11.0 65 52-118 527-592 (1133)
76 KOG2973 Uncharacterized conser 69.5 60 0.0013 34.9 11.6 67 303-372 221-290 (353)
77 PRK11634 ATP-dependent RNA hel 69.3 5.3 0.00012 46.1 4.3 55 47-110 83-140 (629)
78 PF01347 Vitellogenin_N: Lipop 68.8 28 0.0006 39.4 9.9 75 68-147 521-600 (618)
79 KOG3262 H/ACA small nucleolar 67.7 15 0.00032 36.5 6.3 6 543-548 208-213 (215)
80 KOG1077 Vesicle coat complex A 67.6 1.7E+02 0.0038 34.8 15.5 32 36-67 153-184 (938)
81 KOG2137 Protein kinase [Signal 67.5 23 0.00049 41.5 8.7 209 117-361 285-500 (700)
82 KOG0212 Uncharacterized conser 64.9 54 0.0012 37.8 10.8 186 43-238 220-427 (675)
83 KOG2567 Uncharacterized conser 64.8 4.5 9.7E-05 39.3 2.1 24 452-477 70-93 (179)
84 TIGR00207 fliG flagellar motor 63.3 1.6E+02 0.0034 31.6 13.7 157 9-167 55-241 (338)
85 KOG1077 Vesicle coat complex A 62.8 3.3E+02 0.0072 32.6 17.7 98 61-165 322-425 (938)
86 smart00582 RPR domain present 62.4 21 0.00046 31.7 5.9 82 84-169 11-103 (121)
87 KOG1058 Vesicle coat complex C 62.4 3.2E+02 0.0069 32.9 16.4 67 50-117 225-291 (948)
88 PF07539 DRIM: Down-regulated 61.3 50 0.0011 31.1 8.5 120 66-214 15-138 (141)
89 KOG0166 Karyopherin (importin) 60.3 1.9E+02 0.0042 33.0 14.1 291 34-361 68-398 (514)
90 PF10521 DUF2454: Protein of u 60.3 59 0.0013 33.6 9.6 66 70-135 121-204 (282)
91 COG1413 FOG: HEAT repeat [Ener 60.2 25 0.00055 36.3 6.9 76 67-149 179-254 (335)
92 PF14225 MOR2-PAG1_C: Cell mor 60.1 64 0.0014 33.4 9.8 119 12-131 130-254 (262)
93 PF04286 DUF445: Protein of un 59.7 2.2E+02 0.0048 29.5 14.2 140 29-174 139-305 (367)
94 PRK11634 ATP-dependent RNA hel 59.3 11 0.00024 43.6 4.4 28 448-475 503-532 (629)
95 PF08064 UME: UME (NUC010) dom 58.3 34 0.00073 30.5 6.4 79 71-149 18-98 (107)
96 PF01465 GRIP: GRIP domain; I 57.9 14 0.00031 28.3 3.4 32 108-139 10-41 (46)
97 PRK10590 ATP-dependent RNA hel 57.7 7.6 0.00017 42.5 2.7 14 291-304 279-292 (456)
98 PF12243 CTK3: CTD kinase subu 57.7 17 0.00036 34.4 4.6 71 29-118 5-75 (139)
99 PF01347 Vitellogenin_N: Lipop 57.5 2.1E+02 0.0045 32.4 14.2 118 29-149 392-531 (618)
100 PF12719 Cnd3: Nuclear condens 57.1 2.4E+02 0.0052 29.2 14.4 138 32-170 26-182 (298)
101 KOG3293 Small nuclear ribonucl 56.9 6.9 0.00015 36.2 1.8 16 456-471 53-68 (134)
102 PF14631 FancD2: Fanconi anaem 56.7 29 0.00064 44.0 7.7 68 47-119 174-241 (1426)
103 KOG3080 Nucleolar protein-like 56.5 61 0.0013 34.5 8.8 13 343-355 146-158 (328)
104 PF05327 RRN3: RNA polymerase 56.0 1.8E+02 0.0039 33.3 13.3 192 119-329 10-213 (563)
105 KOG0953 Mitochondrial RNA heli 55.5 21 0.00046 41.0 5.6 115 207-330 502-626 (700)
106 PF00514 Arm: Armadillo/beta-c 55.3 8.1 0.00018 28.0 1.7 30 68-97 12-41 (41)
107 KOG0213 Splicing factor 3b, su 55.3 2.3E+02 0.0049 34.2 13.7 244 69-348 800-1102(1172)
108 PRK10590 ATP-dependent RNA hel 55.1 17 0.00036 39.9 4.8 17 58-74 20-36 (456)
109 KOG3172 Small nuclear ribonucl 54.3 12 0.00027 33.8 3.0 10 535-544 103-112 (119)
110 KOG0213 Splicing factor 3b, su 53.9 4.8E+02 0.01 31.7 16.0 115 35-149 802-970 (1172)
111 PF12235 FXR1P_C: Fragile X-re 53.8 5.5 0.00012 38.3 0.7 12 535-546 112-123 (155)
112 KOG3428 Small nuclear ribonucl 53.5 7 0.00015 35.4 1.3 16 528-544 94-109 (109)
113 PF12830 Nipped-B_C: Sister ch 53.1 1.9E+02 0.0042 28.0 11.3 143 35-177 11-170 (187)
114 KOG2956 CLIP-associating prote 51.9 1E+02 0.0022 34.8 10.0 82 68-149 329-416 (516)
115 KOG1824 TATA-binding protein-i 51.3 1.5E+02 0.0033 36.3 11.8 126 74-207 1013-1168(1233)
116 KOG4413 26S proteasome regulat 51.2 3.7E+02 0.0081 29.6 14.2 239 14-276 63-340 (524)
117 TIGR02270 conserved hypothetic 51.0 56 0.0012 36.0 8.0 89 29-130 114-203 (410)
118 PTZ00034 40S ribosomal protein 50.1 11 0.00023 35.2 1.9 25 446-475 38-64 (124)
119 KOG4653 Uncharacterized conser 49.9 2.2E+02 0.0047 34.7 12.7 88 29-116 724-836 (982)
120 PF10363 DUF2435: Protein of u 49.3 57 0.0012 28.5 6.3 82 32-116 3-88 (92)
121 COG5181 HSH155 U2 snRNP splice 48.5 3.2E+02 0.0068 32.4 13.3 258 68-349 604-908 (975)
122 KOG4501 Transcription coactiva 48.2 15 0.00034 41.6 3.1 19 530-548 671-689 (707)
123 COG1413 FOG: HEAT repeat [Ener 48.1 2.7E+02 0.0058 28.7 12.2 103 32-149 43-147 (335)
124 COG5240 SEC21 Vesicle coat com 47.9 1.5E+02 0.0033 34.6 10.7 118 49-169 282-408 (898)
125 PF02985 HEAT: HEAT repeat; I 47.8 39 0.00085 23.2 4.1 28 107-134 2-29 (31)
126 KOG2025 Chromosome condensatio 47.5 99 0.0021 36.7 9.3 111 33-147 86-201 (892)
127 PF12530 DUF3730: Protein of u 47.3 2.6E+02 0.0057 28.1 11.6 64 76-139 9-72 (234)
128 KOG0166 Karyopherin (importin) 47.0 66 0.0014 36.6 7.8 100 36-135 157-267 (514)
129 KOG1949 Uncharacterized conser 46.7 1.8E+02 0.0038 34.8 11.1 48 43-93 186-245 (1005)
130 PF03715 Noc2: Noc2p family; 46.1 99 0.0021 32.6 8.6 157 83-282 129-297 (299)
131 PRK05686 fliG flagellar motor 45.9 2.4E+02 0.0053 30.0 11.7 156 10-167 59-244 (339)
132 PF11698 V-ATPase_H_C: V-ATPas 45.9 1.3E+02 0.0029 27.8 8.4 70 105-197 43-113 (119)
133 KOG1991 Nuclear transport rece 45.0 5.9E+02 0.013 31.5 15.4 117 229-356 588-710 (1010)
134 KOG0211 Protein phosphatase 2A 44.2 5.2E+02 0.011 31.1 14.8 266 31-328 357-645 (759)
135 PF13764 E3_UbLigase_R4: E3 ub 43.8 3.8E+02 0.0083 32.4 13.8 180 141-330 119-328 (802)
136 PF12755 Vac14_Fab1_bd: Vacuol 42.3 77 0.0017 27.9 6.1 53 85-137 3-59 (97)
137 PF07794 DUF1633: Protein of u 41.9 18 0.00039 40.8 2.4 14 524-537 456-469 (790)
138 PF12530 DUF3730: Protein of u 41.8 3.1E+02 0.0068 27.5 11.2 142 6-149 13-169 (234)
139 PF15320 RAM: mRNA cap methyla 41.2 40 0.00086 29.2 3.9 6 468-473 30-35 (81)
140 PTZ00034 40S ribosomal protein 39.7 19 0.00042 33.5 1.9 12 451-462 75-86 (124)
141 KOG2025 Chromosome condensatio 38.3 2.3E+02 0.005 33.9 10.4 47 190-236 22-70 (892)
142 PF10193 Telomere_reg-2: Telom 38.2 65 0.0014 29.2 5.1 74 76-149 12-94 (114)
143 KOG2479 Translation initiation 38.1 25 0.00054 39.1 2.8 12 530-541 141-152 (549)
144 smart00185 ARM Armadillo/beta- 37.7 20 0.00043 25.0 1.3 28 69-96 13-40 (41)
145 KOG2202 U2 snRNP splicing fact 37.3 52 0.0011 34.2 4.8 18 533-550 242-259 (260)
146 PF04826 Arm_2: Armadillo-like 37.0 1.4E+02 0.0031 30.7 8.0 48 81-130 108-159 (254)
147 KOG1993 Nuclear transport rece 37.0 4.7E+02 0.01 31.8 12.7 130 63-198 521-665 (978)
148 KOG1248 Uncharacterized conser 36.7 6.6E+02 0.014 31.6 14.3 108 5-113 646-764 (1176)
149 KOG3758 Uncharacterized conser 36.7 4.4E+02 0.0096 30.9 12.2 168 157-355 398-582 (655)
150 PF03914 CBF: CBF/Mak21 family 36.6 2.3E+02 0.0049 26.7 8.8 73 254-328 21-96 (164)
151 KOG2023 Nuclear transport rece 36.5 1.6E+02 0.0036 34.8 8.9 70 53-137 174-247 (885)
152 PF03378 CAS_CSE1: CAS/CSE pro 36.1 1.7E+02 0.0037 32.5 8.9 162 138-408 25-189 (435)
153 KOG2137 Protein kinase [Signal 35.4 1.7E+02 0.0038 34.5 9.0 89 84-173 306-399 (700)
154 COG1747 Uncharacterized N-term 35.4 7.8E+02 0.017 28.7 14.1 119 183-316 564-688 (711)
155 COG5181 HSH155 U2 snRNP splice 34.4 5.1E+02 0.011 30.8 12.2 182 83-286 703-929 (975)
156 cd07920 Pumilio Pumilio-family 33.7 5.3E+02 0.012 26.3 14.6 96 66-175 57-159 (322)
157 PF10395 Utp8: Utp8 family; I 33.5 1.8E+02 0.0039 34.3 8.8 68 185-262 535-614 (670)
158 KOG2235 Uncharacterized conser 33.3 4.6E+02 0.01 30.9 11.6 119 226-358 605-735 (776)
159 KOG1248 Uncharacterized conser 33.0 9.7E+02 0.021 30.3 14.9 131 40-170 620-767 (1176)
160 KOG0211 Protein phosphatase 2A 32.9 1.9E+02 0.0042 34.6 9.0 105 61-166 225-338 (759)
161 PLN03134 glycine-rich RNA-bind 32.6 38 0.00083 31.7 2.8 9 467-475 104-112 (144)
162 PF11838 ERAP1_C: ERAP1-like C 31.6 5.6E+02 0.012 25.9 11.8 122 92-238 136-263 (324)
163 PF08360 TetR_C_5: QacR-like p 31.5 1.3E+02 0.0029 27.8 6.1 103 9-133 18-125 (131)
164 KOG0105 Alternative splicing f 31.5 33 0.00072 34.3 2.2 7 453-459 23-29 (241)
165 PF11935 DUF3453: Domain of un 31.4 2.3E+02 0.005 28.7 8.3 114 247-365 4-153 (239)
166 KOG1243 Protein kinase [Genera 31.2 3E+02 0.0065 32.6 10.0 156 198-401 245-416 (690)
167 COG5240 SEC21 Vesicle coat com 30.5 3.3E+02 0.0071 32.0 9.8 131 30-170 409-555 (898)
168 KOG2072 Translation initiation 30.0 5.4E+02 0.012 31.3 11.7 32 383-414 769-804 (988)
169 cd00159 RhoGAP RhoGAP: GTPase- 29.6 74 0.0016 29.1 4.1 44 50-93 54-99 (169)
170 KOG1991 Nuclear transport rece 29.5 1.2E+03 0.026 29.0 18.9 183 50-237 481-689 (1010)
171 smart00638 LPD_N Lipoprotein N 28.8 8.8E+02 0.019 27.3 19.5 201 122-365 309-517 (574)
172 PF03130 HEAT_PBS: PBS lyase H 28.7 73 0.0016 21.4 2.9 26 84-115 1-26 (27)
173 PF05084 GRA6: Granule antigen 27.8 55 0.0012 32.1 2.9 7 495-501 183-189 (215)
174 PF02020 W2: eIF4-gamma/eIF5/e 27.8 1.2E+02 0.0026 25.7 4.7 41 85-125 4-44 (84)
175 COG1498 SIK1 Protein implicate 27.6 1.3E+02 0.0029 33.2 6.1 18 185-202 228-245 (395)
176 PF14675 FANCI_S1: FANCI solen 27.6 6.7E+02 0.015 25.5 11.7 142 30-214 5-158 (223)
177 cd03562 CID CID (CTD-Interacti 27.3 1.4E+02 0.003 26.2 5.3 80 85-168 17-103 (114)
178 KOG2945 Predicted RNA-binding 27.1 65 0.0014 35.2 3.6 10 541-550 161-170 (365)
179 PHA02713 hypothetical protein; 26.4 2.3E+02 0.005 32.3 8.1 104 31-137 93-202 (557)
180 TIGR01648 hnRNP-R-Q heterogene 26.3 88 0.0019 36.1 4.8 11 467-477 297-307 (578)
181 PRK14507 putative bifunctional 26.1 1.7E+03 0.036 29.6 16.8 167 200-410 1205-1383(1693)
182 KOG2081 Nuclear transport regu 25.9 1.6E+02 0.0034 34.0 6.4 82 343-462 29-113 (559)
183 COG3280 TreY Maltooligosyl tre 25.4 1.3E+03 0.028 28.1 14.5 155 207-411 432-597 (889)
184 PRK04537 ATP-dependent RNA hel 25.1 46 0.001 38.0 2.3 17 289-305 289-305 (572)
185 smart00755 Grip golgin-97, Ran 24.5 1E+02 0.0023 23.8 3.4 31 108-139 9-39 (46)
186 PF12460 MMS19_C: RNAPII trans 24.4 9.4E+02 0.02 26.1 15.2 83 274-363 318-400 (415)
187 PF04388 Hamartin: Hamartin pr 24.2 4.7E+02 0.01 30.8 10.2 41 106-147 6-47 (668)
188 KOG1060 Vesicle coat complex A 23.8 1.1E+03 0.023 28.9 12.7 70 76-145 400-469 (968)
189 PF14664 RICTOR_N: Rapamycin-i 23.8 9.7E+02 0.021 26.1 16.5 103 33-135 68-177 (371)
190 cd03561 VHS VHS domain family; 23.7 3.5E+02 0.0075 24.7 7.4 69 258-327 63-132 (133)
191 cd00864 PI3Ka Phosphoinositide 23.5 1.8E+02 0.0039 27.6 5.6 73 32-116 39-113 (152)
192 smart00549 TAFH TAF homology. 23.5 1.5E+02 0.0032 26.5 4.5 50 162-214 3-54 (92)
193 smart00567 EZ_HEAT E-Z type HE 23.1 72 0.0016 21.4 2.1 28 83-116 2-29 (30)
194 PF04380 BMFP: Membrane fusoge 22.8 1.7E+02 0.0036 24.9 4.7 35 182-216 25-62 (79)
195 PF08678 Rsbr_N: Rsbr N termin 22.7 2E+02 0.0043 27.0 5.5 34 382-415 54-94 (129)
196 KOG0132 RNA polymerase II C-te 22.6 78 0.0017 37.7 3.4 12 208-219 277-288 (894)
197 PF12335 SBF2: Myotubularin pr 22.6 4.2E+02 0.0091 27.1 8.3 87 118-214 20-110 (225)
198 KOG1062 Vesicle coat complex A 22.5 1.5E+03 0.032 27.7 14.7 109 43-151 154-282 (866)
199 PF12830 Nipped-B_C: Sister ch 22.5 2.7E+02 0.0059 27.0 6.8 68 71-138 11-78 (187)
200 smart00324 RhoGAP GTPase-activ 22.3 1.2E+02 0.0025 28.4 4.1 44 50-93 58-103 (174)
201 KOG1824 TATA-binding protein-i 22.2 1.6E+03 0.035 28.1 18.0 252 62-335 41-312 (1233)
202 PF11935 DUF3453: Domain of un 22.2 1.3E+02 0.0029 30.4 4.7 42 317-358 149-195 (239)
203 TIGR01648 hnRNP-R-Q heterogene 22.1 57 0.0012 37.7 2.2 8 250-257 109-116 (578)
204 PRK12678 transcription termina 21.9 69 0.0015 37.4 2.8 11 528-538 259-269 (672)
205 PF06757 Ins_allergen_rp: Inse 21.8 2.2E+02 0.0048 27.4 6.0 154 32-237 6-167 (179)
206 PRK14511 maltooligosyl trehalo 21.7 1.6E+03 0.034 27.7 17.1 167 200-410 421-598 (879)
207 cd07920 Pumilio Pumilio-family 21.3 8.8E+02 0.019 24.7 14.2 19 158-176 214-232 (322)
208 COG4912 Predicted DNA alkylati 21.2 6.8E+02 0.015 25.7 9.3 102 30-138 86-187 (222)
209 PF08542 Rep_fac_C: Replicatio 21.1 3.8E+02 0.0081 22.2 6.5 37 268-306 32-68 (89)
210 KOG0412 Golgi transport comple 20.8 4.3E+02 0.0094 31.5 8.8 26 34-66 197-223 (773)
211 PF10136 SpecificRecomb: Site- 20.8 7.1E+02 0.015 29.4 10.6 99 205-314 6-115 (643)
212 PF06685 DUF1186: Protein of u 20.7 2.2E+02 0.0047 29.5 5.9 51 66-116 109-161 (249)
213 KOG4661 Hsp27-ERE-TATA-binding 20.4 1.9E+02 0.004 33.7 5.6 79 458-549 796-903 (940)
214 KOG1241 Karyopherin (importin) 20.2 1.5E+03 0.033 27.5 13.0 116 30-146 404-542 (859)
215 KOG1943 Beta-tubulin folding c 20.1 1.8E+03 0.039 27.9 20.4 231 17-286 658-900 (1133)
216 PF06861 BALF1: BALF1 protein; 20.1 5E+02 0.011 25.8 7.8 89 187-288 55-152 (182)
No 1
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=100.00 E-value=3.2e-163 Score=1320.21 Aligned_cols=535 Identities=56% Similarity=0.880 Sum_probs=353.5
Q ss_pred HHHHHHHHhhhhhhccccccChhhHHHHHHHhcCCHHHHHHHhhhhhHHhccCCCcchHHHHHhhhhhcccchhHHHHHh
Q 008865 10 QIEKLYEFGERLNEAKDKSQNVKDYEGIIEAAKTSLKAKQLAAQLIPRFFKFFPDLSSRAVDAHLDLIEEEELGVRVQAI 89 (550)
Q Consensus 10 ~ie~LY~~~~~L~~akd~~~~~~~y~~Il~~~Kgs~k~K~LAaQfI~kffk~FP~L~e~Ai~a~lDLcEDed~~IR~qai 89 (550)
+||+||++||||++|+|+++|+++|++||+++||++++|+|||||||||||+||+|+++||||++|||||||++||+|||
T Consensus 1 ~ie~lY~~~~~L~~a~d~~~~~~~y~~il~~~kg~~k~K~Laaq~I~kffk~FP~l~~~Ai~a~~DLcEDed~~iR~~ai 80 (556)
T PF05918_consen 1 NIEKLYENYEILADAKDKSQHEEDYKEILDGVKGSPKEKRLAAQFIPKFFKHFPDLQEEAINAQLDLCEDEDVQIRKQAI 80 (556)
T ss_dssp -HHHHHHHHHHHHHTGGGGGGHHHHHHHHHGGGS-HHHHHHHHHHHHHHHCC-GGGHHHHHHHHHHHHT-SSHHHHHHHH
T ss_pred CHHHHHHHHhHhhcCCCcccCHHHHHHHHHHccCCHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcccHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccccccccCcchhhhHHHHHHHHHhhchhHHHHHHHHHHHHHHhhchHHHHHHHHHhhccCCCCCChHHHHHHHHHHHh
Q 008865 90 RGLPLFCKDTPEYLSKIVDILVQLLAAEEIVERDAVHKALMSLLRQDVKASLTALFKHIGSVDEPSTDEFIREKVLSFIR 169 (550)
Q Consensus 90 k~Lp~lck~~~e~~~riaDVL~QLLqsdd~~E~~~v~~aL~sllk~D~k~tLt~lf~qI~~~~e~~~eE~vREr~lkFl~ 169 (550)
|+||.|||+||||++||||||+|||||||++|+++|++||++||++||++||++||+||.++ +++||.+||++|+||+
T Consensus 81 k~lp~~ck~~~~~v~kvaDvL~QlL~tdd~~E~~~v~~sL~~ll~~d~k~tL~~lf~~i~~~--~~~de~~Re~~lkFl~ 158 (556)
T PF05918_consen 81 KGLPQLCKDNPEHVSKVADVLVQLLQTDDPVELDAVKNSLMSLLKQDPKGTLTGLFSQIESS--KSGDEQVRERALKFLR 158 (556)
T ss_dssp HHGGGG--T--T-HHHHHHHHHHHTT---HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH-----HS-HHHHHHHHHHHH
T ss_pred HhHHHHHHhHHHHHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc--ccCchHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999853 4678999999999999
Q ss_pred hhcccchhhhcCChHHHHHHHHHHHHhhhcccchHHHHHHHHHHhhccccCCCCchhHHHHHHHHHHHhhcccccCCCCC
Q 008865 170 DKVFPLKAELLKPQEEMERHITDLIKKSLEDVTGAEFRMFMDFLKSLSLFGEKAPTERMKELIGIIEGQADLDAQFNVSD 249 (550)
Q Consensus 170 ~kl~~l~~e~l~~~eE~Ee~i~~~ikKvL~dVt~~EF~l~m~lL~sL~~~~~~~~~gr~qeLv~~i~eqa~Ld~~f~~sD 249 (550)
+||++++.++++|++|+|++|+++|+|+|+|||++||++||+||++|++|+...+..++|+||++|.+||+|+++|+++|
T Consensus 159 ~kl~~l~~~~~~p~~E~e~~i~~~ikkvL~DVTaeEF~l~m~lL~~lk~~~~~~t~~g~qeLv~ii~eQa~Ld~~f~~sD 238 (556)
T PF05918_consen 159 EKLKPLKPELLTPQKEMEEFIVDEIKKVLQDVTAEEFELFMSLLKSLKIYGGKQTIEGRQELVDIIEEQADLDQPFDPSD 238 (556)
T ss_dssp HHGGGS-TTTS---HHHHHHHHHHHHHHCTT--HHHHHHHHHHHHTSGG---GSSHHHHHHHHHHHHHHHTTTS---SSS
T ss_pred HHHhhCcHHHhhchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhCccccccCChHHHHHHHHHHHHHhccCCCCCCcC
Confidence 99999999999999999999999999999999999999999999999998644434344999999999999999999999
Q ss_pred hhhHHHHHHHHHHhhhhhccCCCchhHHHHHHhhhcccCCCCChhhhhhHHHHHHHhCCCCCchhhhhhhHHHHHHHHhh
Q 008865 250 ADHIDRLISCLYMALPFFLRGASGSKFLNYLNKHIIPVFDKLPEERKLDLLKALAEISPYTTPQDSRQILPSVAVLLKKY 329 (550)
Q Consensus 250 ~d~idRli~cl~~Alp~fs~~v~st~f~~y~~~~IlP~l~~L~~~~kl~lLK~lAE~s~~~~~~~a~~~l~~i~~~L~~~ 329 (550)
+++|||+|+|+++|+||||++++|++||+|||++|||+|++||++.|+++||+|||+||||+++++++++|+||++|++|
T Consensus 239 ~e~Idrli~C~~~Alp~fs~~v~Sskfv~y~~~kvlP~l~~l~e~~kl~lLk~lAE~s~~~~~~d~~~~L~~i~~~L~~y 318 (556)
T PF05918_consen 239 PESIDRLISCLRQALPFFSRGVSSSKFVNYMCEKVLPKLSDLPEDRKLDLLKLLAELSPFCGAQDARQLLPSIFQLLKKY 318 (556)
T ss_dssp HHHHHHHHHHHHHHGGG-BTTB--HHHHHHHHHHTCCCTT-----HHHHHHHHHHHHHTT----THHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhhHHhcCCCChHHHHHHHHHHhcCChhhCChHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCccchHHHHHHHHHHHHhhhcCchhhhhccCcccccCCCCCccCcChhhhHHHHHHHHHHHHHHHHHHHHHH
Q 008865 330 MPLRKTGGEEMNFTYVECLLYTFHHLAHKAPNATNSLCGYKIVTGQPSDRLGEDFSDCYKDFTERLTTVEDLTRATMKKL 409 (550)
Q Consensus 330 mP~~~~~~~~l~fS~vEcLL~afh~L~~k~p~~l~~~cg~k~~Tgqpsd~lgeD~~~~~kdFr~RLqyl~~~~q~yikkl 409 (550)
||.+.+ +|++||||||||||+||+||+|+|++++++||||+||||||||+|+|++++++||+.||+||++++|+|||+|
T Consensus 319 mP~~~~-~~~l~fs~vEcLL~afh~La~k~p~~~~~lCgyk~vtgQpsd~~~~~~~~~~kdf~~RL~yl~~~~q~yikkl 397 (556)
T PF05918_consen 319 MPSKKT-EPKLQFSYVECLLYAFHQLARKSPNSLNFLCGYKIVTGQPSDRYGEDDAEKLKDFRERLQYLARGTQAYIKKL 397 (556)
T ss_dssp S-----------HHHHHHHHHHHHHHHTT-THHHH---------------------TTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCC-CCcccchHhhHHHHHHHHHhhhCcchhhhHhhhcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 998764 8999999999999999999999999999999999999999999999889999999999999999999999999
Q ss_pred HHHHhhhhhhHhhcCChHHHHHHHhhhccchhhhhhhccHHHHhhhhhcCCCCccCCCcccccccccCCCCCCC------
Q 008865 410 TQGLADHNKEMAAAKTDEAKEKIKTQKQNTTTGLRTCNNILAMSKPLHSKTPSFIGDKSVNLSWKEATKPSVPS------ 483 (550)
Q Consensus 410 ~~~l~~~~K~~~~~k~de~k~k~~~~~q~~~~aL~~~~NI~~li~~l~~~pPsf~~~~~i~lSW~~~~k~~~~~------ 483 (550)
+++|.+|+|+++++|+|+++.++++++|++++|||||+||++||++|||+||+|+++.+||+||++++++..++
T Consensus 398 ~~~l~~~~k~~~~~k~~k~~~~lk~~~q~~~~aLkt~~NI~~lik~L~~~pPsf~~~~~itlSWk~~~~~~~~k~~~~~~ 477 (556)
T PF05918_consen 398 KQALSEHNKAMSAAKTDKTKAELKTEEQIKVTALKTTNNILALIKDLFHNPPSFKSTKNITLSWKEAKKPKLGKKHQPIT 477 (556)
T ss_dssp HHHH-----------TT--CCHHCSHHHHHHHHHHHHHHHHHHHCC----------------TTS---------------
T ss_pred HHHhhhhcccccccCCccchHHHHHHHHHHHHHHHHHhhHHHHHHHHhhCCcccccccccceeeeeccchhhccccCCcc
Confidence 99999999999999999999999999999999999999999999999999999999556999999988743222
Q ss_pred ------CCCcCCCCCCCCCCCCC-CcccccCCCCCCcchhhhhhhhcCCCCCC-----CCCCCCcccC-CCC--CCCCCC
Q 008865 484 ------TTTASGGKRPASINGSG-NTASKKGRGSGGLQNQLVNRALEGISRGG-----RGGIRGRGRG-WGA--RGRGRG 548 (550)
Q Consensus 484 ------~~~~~~~~r~~~~~g~~-~~~~~~gr~~~~~~~~~~~~~~~g~~~~~-----~~g~rgrgr~-~g~--~gr~~~ 548 (550)
+....+|||++ ||.+ |...++||+++ +||+.++++..|.+++| +||+|||||| ||| ||||||
T Consensus 478 ~~~~~~~~~~~~~k~~~--~g~~~~~~~k~~~~~~-~~~~y~~p~~k~ss~~~~~~~~~g~gr~rg~~~ggg~grg~~r~ 554 (556)
T PF05918_consen 478 FRNNASQQANTGGKRPA--NGKSNNSPAKKGRQQN-MQQQYVPPSGKYSSNGGNSGRGRGGGRGRGRRSGGGRGRGRGRG 554 (556)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccCCCc--CCCCCCcccccccchh-hccccCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCCCCccccc
Confidence 23455688886 4433 44678899887 89999999999987444 4566666665 333 556679
Q ss_pred CC
Q 008865 549 YR 550 (550)
Q Consensus 549 ~~ 550 (550)
||
T Consensus 555 ~~ 556 (556)
T PF05918_consen 555 FW 556 (556)
T ss_dssp --
T ss_pred CC
Confidence 99
No 2
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]
Probab=100.00 E-value=6.2e-118 Score=917.16 Aligned_cols=398 Identities=58% Similarity=0.863 Sum_probs=362.8
Q ss_pred HHHHHHHHHhhhhhhccccccChhhHHHHHHHhcCCHHHHHHHhhhhhHHhccCCCcchHHHHHhhhhhcccchhHHHHH
Q 008865 9 KQIEKLYEFGERLNEAKDKSQNVKDYEGIIEAAKTSLKAKQLAAQLIPRFFKFFPDLSSRAVDAHLDLIEEEELGVRVQA 88 (550)
Q Consensus 9 ~~ie~LY~~~~~L~~akd~~~~~~~y~~Il~~~Kgs~k~K~LAaQfI~kffk~FP~L~e~Ai~a~lDLcEDed~~IR~qa 88 (550)
++||+||++||||++|+|++||+++|++||++|||+.|+||||||||||||||||+|+++|||||+|||||+|++||+||
T Consensus 2 ~~ie~ly~~~e~l~~a~dk~q~v~~y~~il~~~k~~~k~k~lasq~ip~~fk~fp~la~~a~da~~d~~ed~d~~ir~qa 81 (460)
T KOG2213|consen 2 DNIEKLYEFYEILSEATDKSQHVDDYEGILKAVKGTSKEKRLASQFIPRFFKHFPSLADEAIDAQLDLCEDDDVGIRRQA 81 (460)
T ss_pred chHHHHHHHHHHHHhhchhhhhHHHHHHHHHHhhcchHHHHHHHHHHHHHHhhCchhhhHHHHhhhccccccchhhHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccccccccCcchhhhHHHHHHHHHhhchhHHHHHHHHHHHHHHhhchHHHHHHHHHhhccCCCCCChHHHHHHHHHHH
Q 008865 89 IRGLPLFCKDTPEYLSKIVDILVQLLAAEEIVERDAVHKALMSLLRQDVKASLTALFKHIGSVDEPSTDEFIREKVLSFI 168 (550)
Q Consensus 89 ik~Lp~lck~~~e~~~riaDVL~QLLqsdd~~E~~~v~~aL~sllk~D~k~tLt~lf~qI~~~~e~~~eE~vREr~lkFl 168 (550)
||+||.||++ +.++||+|||+|||+ +++|++||.||. .+||++|||+++||
T Consensus 82 ik~lp~fc~~--d~~~rv~d~l~qLLn----------------------k~sl~~Lf~~~~-----~~D~~irek~l~fi 132 (460)
T KOG2213|consen 82 IKGLPLFCKG--DALSRVNDVLVQLLN----------------------KASLTGLFGQIE-----VGDEQIREKVLKFI 132 (460)
T ss_pred HhccchhccC--chhhhhHHHHHHHHH----------------------HHHHHHHHhhhh-----hhhHHHHHHHHHHH
Confidence 9999999999 899999999999999 899999999998 57999999999999
Q ss_pred hhhcccchhhhcCChHHHHHHHHHHHHhhhcccchHHHHHHHHHHhhccccCCCCchhHHHHHHHHHHHhhcccccCCCC
Q 008865 169 RDKVFPLKAELLKPQEEMERHITDLIKKSLEDVTGAEFRMFMDFLKSLSLFGEKAPTERMKELIGIIEGQADLDAQFNVS 248 (550)
Q Consensus 169 ~~kl~~l~~e~l~~~eE~Ee~i~~~ikKvL~dVt~~EF~l~m~lL~sL~~~~~~~~~gr~qeLv~~i~eqa~Ld~~f~~s 248 (550)
++|+++++.|++ ++|+|++|+++|||+|+|||++||.+||++|++|+++|+++|+.|+|+|+++++++|+||. |+++
T Consensus 133 ~tKl~~l~~e~L--~kevE~~iv~eikkal~dVtgeef~lfm~~L~~lk~~~~k~~~a~lqeLa~~~e~~a~lda-f~~s 209 (460)
T KOG2213|consen 133 RTKLITLKGEVL--TKEVERHIVDEIKKALEDVTGEEFTLFMDILASLKSLQTKAGEARLQELAEEQEGLADLDA-FNVS 209 (460)
T ss_pred HHHhhcccHHHh--hhHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhcccCCCCHHHHHHHHHHHhhhhccCc-ccCC
Confidence 999999999999 5899999999999999999999999999999999999999999999999999999999999 9999
Q ss_pred ChhhHHHHHHHHHHhhhhhccCCCchhHHHHHHhhhccc-CCCCChhhhhhHHHHHHHhCCCCCchhhhhhhHHHHHHHH
Q 008865 249 DADHIDRLISCLYMALPFFLRGASGSKFLNYLNKHIIPV-FDKLPEERKLDLLKALAEISPYTTPQDSRQILPSVAVLLK 327 (550)
Q Consensus 249 D~d~idRli~cl~~Alp~fs~~v~st~f~~y~~~~IlP~-l~~L~~~~kl~lLK~lAE~s~~~~~~~a~~~l~~i~~~L~ 327 (550)
|+|+|||||+|+.+|+|||++|++||+||.|+|++|+|+ |+.+++++||++||+|||||+||+.+.|+++||+||++|+
T Consensus 210 D~d~VdRfisCl~~AvPfFargapSskf~~y~n~~~ip~~fdkl~e~rkL~lLK~lAEMss~ttaq~a~q~Lpsi~elLk 289 (460)
T KOG2213|consen 210 DADYVDRFISCLLMAVPFFARGAPSSKFVEYLNKHIIPHHFDKLTEERKLDLLKALAEMSSYTTAQAARQMLPSIVELLK 289 (460)
T ss_pred ChHHHHHHHHHHHHhhhhhhcCCchhHHHHHHHhhhcccccccchHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999997 9999999999999999999999999999999999999999
Q ss_pred hhCCCCCCCCCccchHHHHHHHHHHHHhhhcCchhhhhccCcccccCCCCCccCcChhhhHHHHHHHHHHHHHHHHHHHH
Q 008865 328 KYMPLRKTGGEEMNFTYVECLLYTFHHLAHKAPNATNSLCGYKIVTGQPSDRLGEDFSDCYKDFTERLTTVEDLTRATMK 407 (550)
Q Consensus 328 ~~mP~~~~~~~~l~fS~vEcLL~afh~L~~k~p~~l~~~cg~k~~Tgqpsd~lgeD~~~~~kdFr~RLqyl~~~~q~yik 407 (550)
+|||.|++ .|+++|||||||||+||+||||.|+|++..||||+++|| |++|++|+.|.|||
T Consensus 290 ~yMpa~kt-~ee~~fsyvEClly~~h~Lg~k~pn~t~ak~d~K~L~~~------------------~ad~l~r~fq~y~K 350 (460)
T KOG2213|consen 290 EYMPAPKT-GEEMQFSYVECLLYALHHLGHKKPNFTNAKCDAKKLKDF------------------RADYLARGFQEYIK 350 (460)
T ss_pred HhcccCCc-cHHHHHHHHHHHHHHHHHHhhcCcchhhhhcchhhhccc------------------hHHHHhhhhHHHHH
Confidence 99999987 899999999999999999999999999999998888865 45556666666665
Q ss_pred HHHHHHhhhhhhHhhcCChHHHHHHHhhhccchhhhhhhccHHHHhhhhhcCCCCccCCCcccccccccC
Q 008865 408 KLTQGLADHNKEMAAAKTDEAKEKIKTQKQNTTTGLRTCNNILAMSKPLHSKTPSFIGDKSVNLSWKEAT 477 (550)
Q Consensus 408 kl~~~l~~~~K~~~~~k~de~k~k~~~~~q~~~~aL~~~~NI~~li~~l~~~pPsf~~~~~i~lSW~~~~ 477 (550)
|..++++++|+++|. ++++.++||+.+++++++.||.|+. .+++||..+.
T Consensus 351 ----------~t~E~L~t~edqiKa--------t~~klT~~is~l~Kal~~~k~~~e~--~~~Li~~l~Q 400 (460)
T KOG2213|consen 351 ----------KTGEALKTEEDQIKA--------TALKLTQNISELIKALFHAKPDPEE--EKQLIWTLVQ 400 (460)
T ss_pred ----------HHHHHHHHHHHHHHH--------hhhhhhccHHHHHhhHhcCCCchhH--HHHHHHHHHH
Confidence 233334455555443 5556666666666666666666664 5566665543
No 3
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]
Probab=98.91 E-value=7.2e-10 Score=116.81 Aligned_cols=299 Identities=24% Similarity=0.280 Sum_probs=181.1
Q ss_pred ccccccCcchhhhHHHHHHHHHhhchhHHHHHHHHHHHHHHhhchHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhhhc
Q 008865 93 PLFCKDTPEYLSKIVDILVQLLAAEEIVERDAVHKALMSLLRQDVKASLTALFKHIGSVDEPSTDEFIREKVLSFIRDKV 172 (550)
Q Consensus 93 p~lck~~~e~~~riaDVL~QLLqsdd~~E~~~v~~aL~sllk~D~k~tLt~lf~qI~~~~e~~~eE~vREr~lkFl~~kl 172 (550)
-..||.-|...+|+.+++..+|. .++|..+|...-++|-+.+-. .++.+++++.+...-++
T Consensus 123 ~irek~l~fi~tKl~~l~~e~L~--kevE~~iv~eikkal~dVtge-ef~lfm~~L~~lk~~~~---------------- 183 (460)
T KOG2213|consen 123 QIREKVLKFIRTKLITLKGEVLT--KEVERHIVDEIKKALEDVTGE-EFTLFMDILASLKSLQT---------------- 183 (460)
T ss_pred HHHHHHHHHHHHHhhcccHHHhh--hHHHHHHHHHHHHHHHhccHH-HHHHHHHHHHhhhcccC----------------
Confidence 34466667778999999999999 889999999988888888755 77777777653211110
Q ss_pred ccchhhhcCChHHHHHHHHHHHHhhhccc-----chHHH-HHHHHH-HhhccccCCCCchhHHHHHHHHHHHhhcccccC
Q 008865 173 FPLKAELLKPQEEMERHITDLIKKSLEDV-----TGAEF-RMFMDF-LKSLSLFGEKAPTERMKELIGIIEGQADLDAQF 245 (550)
Q Consensus 173 ~~l~~e~l~~~eE~Ee~i~~~ikKvL~dV-----t~~EF-~l~m~l-L~sL~~~~~~~~~gr~qeLv~~i~eqa~Ld~~f 245 (550)
..+.+++++.+... .-+.+. +-.+- +-|++. +...|.|....|+-| .++++-++.=.. .|
T Consensus 184 -------k~~~a~lqeLa~~~--e~~a~ldaf~~sD~d~VdRfisCl~~AvPfFargapSsk---f~~y~n~~~ip~-~f 250 (460)
T KOG2213|consen 184 -------KAGEARLQELAEEQ--EGLADLDAFNVSDADYVDRFISCLLMAVPFFARGAPSSK---FVEYLNKHIIPH-HF 250 (460)
T ss_pred -------CCCHHHHHHHHHHH--hhhhccCcccCCChHHHHHHHHHHHHhhhhhhcCCchhH---HHHHHHhhhccc-cc
Confidence 01112222222111 111111 11111 122222 223455554445433 455555442211 22
Q ss_pred CCCChhhHHHHHHHHHHhhhhhccCCCchhHHHHHHhhhcccCCCCChhhhhhHHHHHHHhCCCCCchh--hhhhhHHHH
Q 008865 246 NVSDADHIDRLISCLYMALPFFLRGASGSKFLNYLNKHIIPVFDKLPEERKLDLLKALAEISPYTTPQD--SRQILPSVA 323 (550)
Q Consensus 246 ~~sD~d~idRli~cl~~Alp~fs~~v~st~f~~y~~~~IlP~l~~L~~~~kl~lLK~lAE~s~~~~~~~--a~~~l~~i~ 323 (550)
+. ..-+|=+..++- +.=+|+.-.. =...+.||. -.++||..+.+.-+|..+. .-+|+-+++
T Consensus 251 dk---l~e~rkL~lLK~-lAEMss~tta-----q~a~q~Lps--------i~elLk~yMpa~kt~ee~~fsyvEClly~~ 313 (460)
T KOG2213|consen 251 DK---LTEERKLDLLKA-LAEMSSYTTA-----QAARQMLPS--------IVELLKEYMPAPKTGEEMQFSYVECLLYAL 313 (460)
T ss_pred cc---chHHHHHHHHHH-HHHhCccchH-----HHHHHHHHH--------HHHHHHHhcccCCccHHHHHHHHHHHHHHH
Confidence 22 222332222211 1111111100 011233342 2367777777777776554 567889999
Q ss_pred HHHHhhCCCCCCCCCccchHHHHHHHHHHHHhh-hcCchhhhhccCcccccCCCCCccCcChhhhHHHHHHHHHHHHHHH
Q 008865 324 VLLKKYMPLRKTGGEEMNFTYVECLLYTFHHLA-HKAPNATNSLCGYKIVTGQPSDRLGEDFSDCYKDFTERLTTVEDLT 402 (550)
Q Consensus 324 ~~L~~~mP~~~~~~~~l~fS~vEcLL~afh~L~-~k~p~~l~~~cg~k~~Tgqpsd~lgeD~~~~~kdFr~RLqyl~~~~ 402 (550)
..|....|.-.. .... ++-.+|=.. .++++|....|+|..+|.-.+..+
T Consensus 314 h~Lg~k~pn~t~-----------------ak~d~K~L~~~~ad-------------~l~r~fq~y~K~t~E~L~t~edqi 363 (460)
T KOG2213|consen 314 HHLGHKKPNFTN-----------------AKCDAKKLKDFRAD-------------YLARGFQEYIKKTGEALKTEEDQI 363 (460)
T ss_pred HHHhhcCcchhh-----------------hhcchhhhccchHH-------------HHhhhhHHHHHHHHHHHHHHHHHH
Confidence 999988875221 1112 223332112 244678899999999999999999
Q ss_pred HHHHHHHHHHHhhhhhhHhhcCCh--HHHHHHHhhhccchhhhhhhccHHHHhhh--hhcCCCCccCCCccccc
Q 008865 403 RATMKKLTQGLADHNKEMAAAKTD--EAKEKIKTQKQNTTTGLRTCNNILAMSKP--LHSKTPSFIGDKSVNLS 472 (550)
Q Consensus 403 q~yikkl~~~l~~~~K~~~~~k~d--e~k~k~~~~~q~~~~aL~~~~NI~~li~~--l~~~pPsf~~~~~i~lS 472 (550)
+++..++++.|+.|.|.+...|++ +.+.-+....|.+++++++|+|+..++.. +++..|+|++ .-+.|
T Consensus 364 Kat~~klT~~is~l~Kal~~~k~~~e~~~~Li~~l~Q~~aiG~r~a~~~La~t~~~~~~~~s~~~~~--~a~~s 435 (460)
T KOG2213|consen 364 KATALKLTQNISELIKALFHAKPDPEEEKQLIWTLVQNTTIGLRTANNILAMTKGFCFHHKSRSPMG--HARRS 435 (460)
T ss_pred HHhhhhhhccHHHHHhhHhcCCCchhHHHHHHHHHHHhhhccchhhHHHHHHHhcccCCCCChhhhh--ccCcc
Confidence 999999999999999999999999 55555567789999999999999999976 8999999997 44444
No 4
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=98.81 E-value=4e-06 Score=93.37 Aligned_cols=375 Identities=15% Similarity=0.212 Sum_probs=171.9
Q ss_pred ChhhHHHHHHHhc-CCHHHHHHHhhhhhHHhccCCCcchHHHHHhhhhhcccchhHHHHHhhccccccccCcchhhhHHH
Q 008865 30 NVKDYEGIIEAAK-TSLKAKQLAAQLIPRFFKFFPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVD 108 (550)
Q Consensus 30 ~~~~y~~Il~~~K-gs~k~K~LAaQfI~kffk~FP~L~e~Ai~a~lDLcEDed~~IR~qaik~Lp~lck~~~e~~~riaD 108 (550)
.++++-.++|... -+..+.+=|=.-||.+.|+=|++-..-.|.+.-|.--||+.-+..+=+.|..+-+-+|. .-+..
T Consensus 57 ~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~kvaDvL~QlL~tdd~~E~~~v~~sL~~ll~~d~k--~tL~~ 134 (556)
T PF05918_consen 57 QEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSKVADVLVQLLQTDDPVELDAVKNSLMSLLKQDPK--GTLTG 134 (556)
T ss_dssp HHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHHHHHHHHHHTT---HHHHHHHHHHHHHHHHH-HH--HHHHH
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcCcH--HHHHH
Confidence 4567889999999 78889999999999999999999999999999999999988888888888888887752 33788
Q ss_pred HHHHHHh--hchhHHHHHHHHHHHHHHhh----------chHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhh-hcc--
Q 008865 109 ILVQLLA--AEEIVERDAVHKALMSLLRQ----------DVKASLTALFKHIGSVDEPSTDEFIREKVLSFIRD-KVF-- 173 (550)
Q Consensus 109 VL~QLLq--sdd~~E~~~v~~aL~sllk~----------D~k~tLt~lf~qI~~~~e~~~eE~vREr~lkFl~~-kl~-- 173 (550)
++.|++. +.|..-++-+=+-|..-+.. +...-+...+..+..+ -.++|- +.+|.||+. +++
T Consensus 135 lf~~i~~~~~~de~~Re~~lkFl~~kl~~l~~~~~~p~~E~e~~i~~~ikkvL~D--VTaeEF--~l~m~lL~~lk~~~~ 210 (556)
T PF05918_consen 135 LFSQIESSKSGDEQVRERALKFLREKLKPLKPELLTPQKEMEEFIVDEIKKVLQD--VTAEEF--ELFMSLLKSLKIYGG 210 (556)
T ss_dssp HHHHHH---HS-HHHHHHHHHHHHHHGGGS-TTTS---HHHHHHHHHHHHHHCTT----HHHH--HHHHHHHHTSGG---
T ss_pred HHHHHHhcccCchHHHHHHHHHHHHHHhhCcHHHhhchHHHHHHHHHHHHHHHHh--ccHHHH--HHHHHHHHhCccccc
Confidence 8899983 22223333333333333332 2333333334443310 011111 233444443 331
Q ss_pred -cchhhhcCChHHHHHHHHHHHHhhhc---ccc-hHHHHHHHHHHh-hccccCCCCchhHHHHHHHHHHHhhcccccCCC
Q 008865 174 -PLKAELLKPQEEMERHITDLIKKSLE---DVT-GAEFRMFMDFLK-SLSLFGEKAPTERMKELIGIIEGQADLDAQFNV 247 (550)
Q Consensus 174 -~l~~e~l~~~eE~Ee~i~~~ikKvL~---dVt-~~EF~l~m~lL~-sL~~~~~~~~~gr~qeLv~~i~eqa~Ld~~f~~ 247 (550)
..... ..++-+.|.+.. .|. +++ .+=++.|+..+. .+|.|.. .+ +-.+++.++.++.- . .|+.
T Consensus 211 ~~t~~g----~qeLv~ii~eQa--~Ld~~f~~sD~e~Idrli~C~~~Alp~fs~-~v--~Sskfv~y~~~kvl-P-~l~~ 279 (556)
T PF05918_consen 211 KQTIEG----RQELVDIIEEQA--DLDQPFDPSDPESIDRLISCLRQALPFFSR-GV--SSSKFVNYMCEKVL-P-KLSD 279 (556)
T ss_dssp GSSHHH----HHHHHHHHHHHH--TTTS---SSSHHHHHHHHHHHHHHGGG-BT-TB----HHHHHHHHHHTC-C-CTT-
T ss_pred cCChHH----HHHHHHHHHHHh--ccCCCCCCcCHHHHHHHHHHHHHhhHHhcC-CC--ChHHHHHHHHHHhc-C-Chhh
Confidence 11110 123334444332 111 222 233344544443 4677753 22 22679999988622 1 2222
Q ss_pred CChhhHHHHHHHHHHhhhhhccCCCchhHHHHHHhhh---cccCCCCChhhhhhHHHHHHHhCCCCCchhhhhhhHHHHH
Q 008865 248 SDADHIDRLISCLYMALPFFLRGASGSKFLNYLNKHI---IPVFDKLPEERKLDLLKALAEISPYTTPQDSRQILPSVAV 324 (550)
Q Consensus 248 sD~d~idRli~cl~~Alp~fs~~v~st~f~~y~~~~I---lP~l~~L~~~~kl~lLK~lAE~s~~~~~~~a~~~l~~i~~ 324 (550)
-+.+.==+++..+-.+.||..... +..++..+-+.+ +|.=. -.++.++. --+++-..|.
T Consensus 280 l~e~~kl~lLk~lAE~s~~~~~~d-~~~~L~~i~~~L~~ymP~~~-~~~~l~fs----------------~vEcLL~afh 341 (556)
T PF05918_consen 280 LPEDRKLDLLKLLAELSPFCGAQD-ARQLLPSIFQLLKKYMPSKK-TEPKLQFS----------------YVECLLYAFH 341 (556)
T ss_dssp ----HHHHHHHHHHHHHTT----T-HHHHHHHHHHHHHTTS-----------HH----------------HHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHcCCCCccc-HHHHHHHHHHHHHHhCCCCC-CCCcccch----------------HhhHHHHHHH
Confidence 222222256777777788876544 677766665544 45111 00111111 1234444555
Q ss_pred HHHhhCCCCCCCCCccchHHHHHHHHHHHHhhhcCchhhhhccCcccccCCCCCccCcChhhhHHHHHHHHHHHHHHHHH
Q 008865 325 LLKKYMPLRKTGGEEMNFTYVECLLYTFHHLAHKAPNATNSLCGYKIVTGQPSDRLGEDFSDCYKDFTERLTTVEDLTRA 404 (550)
Q Consensus 325 ~L~~~mP~~~~~~~~l~fS~vEcLL~afh~L~~k~p~~l~~~cg~k~~Tgqpsd~lgeD~~~~~kdFr~RLqyl~~~~q~ 404 (550)
.|...-|. ++.-.|.....|- -|..... -.-++.+. ||-.||.=|-..+|---.....
T Consensus 342 ~La~k~p~---------~~~~lCgyk~vtg----Qpsd~~~--------~~~~~~~k-df~~RL~yl~~~~q~yikkl~~ 399 (556)
T PF05918_consen 342 QLARKSPN---------SLNFLCGYKIVTG----QPSDRYG--------EDDAEKLK-DFRERLQYLARGTQAYIKKLKQ 399 (556)
T ss_dssp HHHTT-TH---------HHH---------------------------------TTTH-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhCcc---------hhhhHhhhccccc----ccccccc--------cccHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 66555542 2222232222211 2222211 01123344 8899999999999877777777
Q ss_pred HH----HHHHHHHhhhhhhHhhcCChHHHHHHHhhhccchhhhhhhccHHHHhhhhhcC---CCCccC
Q 008865 405 TM----KKLTQGLADHNKEMAAAKTDEAKEKIKTQKQNTTTGLRTCNNILAMSKPLHSK---TPSFIG 465 (550)
Q Consensus 405 yi----kkl~~~l~~~~K~~~~~k~de~k~k~~~~~q~~~~aL~~~~NI~~li~~l~~~---pPsf~~ 465 (550)
.+ |++..+.++ |..+.+|+++ |+++..- ..+.+-+.++.++-+=--.|..+ .||++.
T Consensus 400 ~l~~~~k~~~~~k~~--k~~~~lk~~~-q~~~~aL-kt~~NI~~lik~L~~~pPsf~~~~~itlSWk~ 463 (556)
T PF05918_consen 400 ALSEHNKAMSAAKTD--KTKAELKTEE-QIKVTAL-KTTNNILALIKDLFHNPPSFKSTKNITLSWKE 463 (556)
T ss_dssp HH-----------TT----CCHHCSHH-HHHHHHH-HHHHHHHHHHCC----------------TTS-
T ss_pred HhhhhcccccccCCc--cchHHHHHHH-HHHHHHH-HHHhhHHHHHHHHhhCCcccccccccceeeee
Confidence 77 666666677 7788889988 7664322 12234455554444433333332 355554
No 5
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=97.92 E-value=0.0012 Score=71.80 Aligned_cols=281 Identities=14% Similarity=0.158 Sum_probs=158.1
Q ss_pred hcCCHHHHHHHhhhhhHHhccCCCcchHHHHHhhhhhcccchhHHHHHhhccccccccCcchhhh-HHHHHHHHHhhchh
Q 008865 41 AKTSLKAKQLAAQLIPRFFKFFPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSK-IVDILVQLLAAEEI 119 (550)
Q Consensus 41 ~Kgs~k~K~LAaQfI~kffk~FP~L~e~Ai~a~lDLcEDed~~IR~qaik~Lp~lck~~~e~~~r-iaDVL~QLLqsdd~ 119 (550)
...++-.+-+|=.+++..- -|++.+.-+..+..+..|.++-||+.|+-.+..+++..|+.+.. +.+.|.++|.+.++
T Consensus 89 ~~~n~~~~~lAL~~l~~i~--~~~~~~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~~~~~~~~~l~~lL~d~~~ 166 (526)
T PF01602_consen 89 NSPNPYIRGLALRTLSNIR--TPEMAEPLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDLVEDELIPKLKQLLSDKDP 166 (526)
T ss_dssp CSSSHHHHHHHHHHHHHH---SHHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCCHHGGHHHHHHHHTTHSSH
T ss_pred cCCCHHHHHHHHhhhhhhc--ccchhhHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhhccCCcc
Confidence 3466778888888888865 78888999999999999999999999999999999999999888 79999999988888
Q ss_pred HHHHHHHHHHHHHHhhchHH---HHHHHHHhhccCCCCCChHHHHHHHHHHHhhhcccchhhhcCChHHHH--HHHHHHH
Q 008865 120 VERDAVHKALMSLLRQDVKA---SLTALFKHIGSVDEPSTDEFIREKVLSFIRDKVFPLKAELLKPQEEME--RHITDLI 194 (550)
Q Consensus 120 ~E~~~v~~aL~sllk~D~k~---tLt~lf~qI~~~~e~~~eE~vREr~lkFl~~kl~~l~~e~l~~~eE~E--e~i~~~i 194 (550)
..+..+-.+|..+ +.++.. .+..++..+... -+..++-++..+++++..-...-+ +.. ..++..+
T Consensus 167 ~V~~~a~~~l~~i-~~~~~~~~~~~~~~~~~L~~~-l~~~~~~~q~~il~~l~~~~~~~~--------~~~~~~~~i~~l 236 (526)
T PF01602_consen 167 SVVSAALSLLSEI-KCNDDSYKSLIPKLIRILCQL-LSDPDPWLQIKILRLLRRYAPMEP--------EDADKNRIIEPL 236 (526)
T ss_dssp HHHHHHHHHHHHH-HCTHHHHTTHHHHHHHHHHHH-HTCCSHHHHHHHHHHHTTSTSSSH--------HHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHH-ccCcchhhhhHHHHHHHhhhc-ccccchHHHHHHHHHHHhcccCCh--------hhhhHHHHHHHH
Confidence 7777777777777 555554 455555554310 014567788888888874332211 111 3444444
Q ss_pred HhhhcccchHHHHHHHHHHhhccccCCCCchhHHHHHHHHHHHhhcccccCCCCChhhHHHHHHHHHHhhhhhccCCCch
Q 008865 195 KKSLEDVTGAEFRMFMDFLKSLSLFGEKAPTERMKELIGIIEGQADLDAQFNVSDADHIDRLISCLYMALPFFLRGASGS 274 (550)
Q Consensus 195 kKvL~dVt~~EF~l~m~lL~sL~~~~~~~~~gr~qeLv~~i~eqa~Ld~~f~~sD~d~idRli~cl~~Alp~fs~~v~st 274 (550)
...|+.... ..+++..+.+-.+.. .+. -.+.++..+.. .+..+|+..-=-.+.++.+..... .
T Consensus 237 ~~~l~s~~~---~V~~e~~~~i~~l~~-~~~-~~~~~~~~L~~------lL~s~~~nvr~~~L~~L~~l~~~~------~ 299 (526)
T PF01602_consen 237 LNLLQSSSP---SVVYEAIRLIIKLSP-SPE-LLQKAINPLIK------LLSSSDPNVRYIALDSLSQLAQSN------P 299 (526)
T ss_dssp HHHHHHHHH---HHHHHHHHHHHHHSS-SHH-HHHHHHHHHHH------HHTSSSHHHHHHHHHHHHHHCCHC------H
T ss_pred HHHhhcccc---HHHHHHHHHHHHhhc-chH-HHHhhHHHHHH------HhhcccchhehhHHHHHHHhhccc------c
Confidence 444441111 112222222222211 111 01222222222 222333321111222222222111 1
Q ss_pred hHHHHHHhhhcccCCCCChhhhhhHHHHHHHhCCCCCchhhhhhhHHHHHHHHhhCCCCCCCCCccchHHHHHHHHHHHH
Q 008865 275 KFLNYLNKHIIPVFDKLPEERKLDLLKALAEISPYTTPQDSRQILPSVAVLLKKYMPLRKTGGEEMNFTYVECLLYTFHH 354 (550)
Q Consensus 275 ~f~~y~~~~IlP~l~~L~~~~kl~lLK~lAE~s~~~~~~~a~~~l~~i~~~L~~~mP~~~~~~~~l~fS~vEcLL~afh~ 354 (550)
+++.+.--.++-...+=|...|...|.+|..++. +.. +..|.+.|..|+... -+.++.+.+..+...
T Consensus 300 ~~v~~~~~~~~~l~~~~d~~Ir~~~l~lL~~l~~---~~n----~~~Il~eL~~~l~~~------~d~~~~~~~i~~I~~ 366 (526)
T PF01602_consen 300 PAVFNQSLILFFLLYDDDPSIRKKALDLLYKLAN---ESN----VKEILDELLKYLSEL------SDPDFRRELIKAIGD 366 (526)
T ss_dssp HHHGTHHHHHHHHHCSSSHHHHHHHHHHHHHH-----HHH----HHHHHHHHHHHHHHC--------HHHHHHHHHHHHH
T ss_pred hhhhhhhhhhheecCCCChhHHHHHHHHHhhccc---ccc----hhhHHHHHHHHHHhc------cchhhhhhHHHHHHH
Confidence 1111000011101112244567777777766643 333 344666677777221 134599999999999
Q ss_pred hhhcCchhh
Q 008865 355 LAHKAPNAT 363 (550)
Q Consensus 355 L~~k~p~~l 363 (550)
++.++|...
T Consensus 367 la~~~~~~~ 375 (526)
T PF01602_consen 367 LAEKFPPDA 375 (526)
T ss_dssp HHHHHGSSH
T ss_pred HHhccCchH
Confidence 999988643
No 6
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=97.82 E-value=0.012 Score=65.33 Aligned_cols=319 Identities=18% Similarity=0.227 Sum_probs=185.5
Q ss_pred hhhHHHHHH-Hhc-CCHHHHHHHhhhhhHHhccCCC-----cchHHHHHhhhhhcccchhHHHHHhhccccccccCcchh
Q 008865 31 VKDYEGIIE-AAK-TSLKAKQLAAQLIPRFFKFFPD-----LSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYL 103 (550)
Q Consensus 31 ~~~y~~Il~-~~K-gs~k~K~LAaQfI~kffk~FP~-----L~e~Ai~a~lDLcEDed~~IR~qaik~Lp~lck~~~e~~ 103 (550)
...|...|. +.+ .++.+|+||..-|.+...+-.. ...+.+..++++..|+|..|-..|++.|-.+|+.. ..+
T Consensus 75 ~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~-~~~ 153 (503)
T PF10508_consen 75 LPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDLSVAKAAIKALKKLASHP-EGL 153 (503)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCc-hhH
Confidence 445555444 444 8899999999999999887765 44667788899999999999999999999999864 555
Q ss_pred hhH-----HHHHHHHHhhchhHHHHHHHHHHHHHHhhchHH--HH--HHHHHhhccCCCCC-ChHHHHHHHHHHHhhhcc
Q 008865 104 SKI-----VDILVQLLAAEEIVERDAVHKALMSLLRQDVKA--SL--TALFKHIGSVDEPS-TDEFIREKVLSFIRDKVF 173 (550)
Q Consensus 104 ~ri-----aDVL~QLLqsdd~~E~~~v~~aL~sllk~D~k~--tL--t~lf~qI~~~~e~~-~eE~vREr~lkFl~~kl~ 173 (550)
..+ ...|.+++...+...+--|...++.+.+..+.. .. +|+|+.+.. +-. +|-.++.-++..|..=..
T Consensus 154 ~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~--eL~~dDiLvqlnalell~~La~ 231 (503)
T PF10508_consen 154 EQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLK--ELDSDDILVQLNALELLSELAE 231 (503)
T ss_pred HHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHH--HhcCccHHHHHHHHHHHHHHHc
Confidence 555 778899999977788888999999998875432 11 235666552 223 344579999987775222
Q ss_pred -cchhhhcCChHHHHHHHHHHHHhhhcccchHH-HH-----HHHHHHhhccccCCCCchhHHHHHHHHHHHhhcccccCC
Q 008865 174 -PLKAELLKPQEEMERHITDLIKKSLEDVTGAE-FR-----MFMDFLKSLSLFGEKAPTERMKELIGIIEGQADLDAQFN 246 (550)
Q Consensus 174 -~l~~e~l~~~eE~Ee~i~~~ikKvL~dVt~~E-F~-----l~m~lL~sL~~~~~~~~~gr~qeLv~~i~eqa~Ld~~f~ 246 (550)
+-...++ .+.-|++.|-..|.+...+. +. -+|.+...+-.+++....++...+++.+. ..++
T Consensus 232 ~~~g~~yL-----~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~~~~~v~~~~p~~~~~l~------~~~~ 300 (503)
T PF10508_consen 232 TPHGLQYL-----EQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARVSPQEVLELYPAFLERLF------SMLE 300 (503)
T ss_pred ChhHHHHH-----HhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhcChHHHHHHHHHHHHHHH------HHhC
Confidence 1122222 23345555666666555544 32 23455555544421111111122333333 2344
Q ss_pred CCChhhHHHHHHHHHHhhhhhccCCCchhHHHH--------HHhhhcccCCCCChhhhhhHHHHHHHhCCCCCchhhhhh
Q 008865 247 VSDADHIDRLISCLYMALPFFLRGASGSKFLNY--------LNKHIIPVFDKLPEERKLDLLKALAEISPYTTPQDSRQI 318 (550)
Q Consensus 247 ~sD~d~idRli~cl~~Alp~fs~~v~st~f~~y--------~~~~IlP~l~~L~~~~kl~lLK~lAE~s~~~~~~~a~~~ 318 (550)
+.|+....- +--++-.+...+.+-.++.+ +.+.+.-.....+.+.|++.|..|+.+-...+.....++
T Consensus 301 s~d~~~~~~----A~dtlg~igst~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il~~~~~~~~~~i 376 (503)
T PF10508_consen 301 SQDPTIREV----AFDTLGQIGSTVEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASILTSGTDRQDNDI 376 (503)
T ss_pred CCChhHHHH----HHHHHHHHhCCHHHHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcCCCCchHHH
Confidence 555544433 33355566666666555511 222333334444568999999999999544343222222
Q ss_pred hHHHHHHHHhhCCCCCCC-----CCccchHHHHHHHHHHHHhhhcCchhhhhccC
Q 008865 319 LPSVAVLLKKYMPLRKTG-----GEEMNFTYVECLLYTFHHLAHKAPNATNSLCG 368 (550)
Q Consensus 319 l~~i~~~L~~~mP~~~~~-----~~~l~fS~vEcLL~afh~L~~k~p~~l~~~cg 368 (550)
+ .+-+...+.+...|.. --+=.|..+-|--|.|=+---.+|-....+|.
T Consensus 377 ~-~~~~~w~~~~~~~~~~~~l~~~~~qPF~elr~a~~~~l~~l~~~~Wg~~~i~~ 430 (503)
T PF10508_consen 377 L-SITESWYESLSGSPLSNLLMSLLKQPFPELRCAAYRLLQALAAQPWGQREICS 430 (503)
T ss_pred H-HHHHHHHHHhcCCchHHHHHHHhcCCchHHHHHHHHHHHHHhcCHHHHHHHHh
Confidence 2 3333333344333321 12235667777666654444444444444443
No 7
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=97.71 E-value=0.0011 Score=63.45 Aligned_cols=162 Identities=17% Similarity=0.207 Sum_probs=110.5
Q ss_pred HHHHHHhhhhhHHhccCCCcchHHHHHhhhhhcccchhHHHHHhhccccccccCcchhhh-HHHHHHHHHhhchhHHHHH
Q 008865 46 KAKQLAAQLIPRFFKFFPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSK-IVDILVQLLAAEEIVERDA 124 (550)
Q Consensus 46 k~K~LAaQfI~kffk~FP~L~e~Ai~a~lDLcEDed~~IR~qaik~Lp~lck~~~e~~~r-iaDVL~QLLqsdd~~E~~~ 124 (550)
..+.-|--.+.-.-..||++-|.-+..+++...|+++.||++|+.-|-.+-..+.--+.- +-.-++.+|..+++..+..
T Consensus 3 ~vR~n~i~~l~DL~~r~~~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k~~l~~~~l~~l~D~~~~Ir~~ 82 (178)
T PF12717_consen 3 SVRNNAIIALGDLCIRYPNLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKVKGQLFSRILKLLVDENPEIRSL 82 (178)
T ss_pred HHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceeehhhhhHHHHHHHcCCCHHHHHH
Confidence 344445555666778899999999999999999999999999999999988764322222 3234446888899999999
Q ss_pred HHHHHHHHHhh-chHHHH---HHHHHhhccCCC-C---CChHHHHHHHHHHHhhhcccchhhhcCChHHHHHHHHHHHHh
Q 008865 125 VHKALMSLLRQ-DVKASL---TALFKHIGSVDE-P---STDEFIREKVLSFIRDKVFPLKAELLKPQEEMERHITDLIKK 196 (550)
Q Consensus 125 v~~aL~sllk~-D~k~tL---t~lf~qI~~~~e-~---~~eE~vREr~lkFl~~kl~~l~~e~l~~~eE~Ee~i~~~ikK 196 (550)
++..|.++.+. +|.... -.++.++....+ + ..++.-|.++++|+-..+.. .+..+..+...+.+
T Consensus 83 A~~~~~e~~~~~~~~~i~~~~~e~i~~l~~~~~~~~~~~~~~~~~~~I~~fll~~i~~--------d~~~~~l~~kl~~~ 154 (178)
T PF12717_consen 83 ARSFFSELLKKRNPNIIYNNFPELISSLNNCYEHPVYGPLSREKRKKIYKFLLDFIDK--------DKQKESLVEKLCQR 154 (178)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHHhCccccccccccCHHHHHHHHHHHHHHcCc--------HHHHHHHHHHHHHH
Confidence 99999999998 665433 333344432222 1 24556789999999877743 23455666666666
Q ss_pred hhccc---chHHHHHHHHHHhh
Q 008865 197 SLEDV---TGAEFRMFMDFLKS 215 (550)
Q Consensus 197 vL~dV---t~~EF~l~m~lL~s 215 (550)
++..+ ++....-+..+|++
T Consensus 155 ~~~~~~~~~~~~~~d~~~~l~~ 176 (178)
T PF12717_consen 155 FLNAVVDEDERVLRDILYCLSC 176 (178)
T ss_pred HHHHcccccHHHHHHHHHHHHC
Confidence 66555 44444434444443
No 8
>PTZ00429 beta-adaptin; Provisional
Probab=97.57 E-value=0.036 Score=64.58 Aligned_cols=103 Identities=19% Similarity=0.223 Sum_probs=89.0
Q ss_pred HHHHHHHhc-CCHHHHHHHhhhhhHHhccCCCcchHHHHHhhhhhcccchhHHHHHhhccccccccCcchhhhHHHHHHH
Q 008865 34 YEGIIEAAK-TSLKAKQLAAQLIPRFFKFFPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQ 112 (550)
Q Consensus 34 y~~Il~~~K-gs~k~K~LAaQfI~kffk~FP~L~e~Ai~a~lDLcEDed~~IR~qaik~Lp~lck~~~e~~~riaDVL~Q 112 (550)
|-.++..+. .+...|+|.--++-.|.+.-|+++--|+|++..=|.|.++.||--|||-|..|.- |+.+.-+..-+.+
T Consensus 70 F~dVvk~~~S~d~elKKLvYLYL~~ya~~~pelalLaINtl~KDl~d~Np~IRaLALRtLs~Ir~--~~i~e~l~~~lkk 147 (746)
T PTZ00429 70 FVDVVKLAPSTDLELKKLVYLYVLSTARLQPEKALLAVNTFLQDTTNSSPVVRALAVRTMMCIRV--SSVLEYTLEPLRR 147 (746)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHcccChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHcCCc--HHHHHHHHHHHHH
Confidence 444444444 6788999999999999999999999999999988999999999999999988775 4777778888899
Q ss_pred HHhhchhHHHHHHHHHHHHHHhhchH
Q 008865 113 LLAAEEIVERDAVHKALMSLLRQDVK 138 (550)
Q Consensus 113 LLqsdd~~E~~~v~~aL~sllk~D~k 138 (550)
+|...+|-.+..+=-++..+++.+|.
T Consensus 148 ~L~D~~pYVRKtAalai~Kly~~~pe 173 (746)
T PTZ00429 148 AVADPDPYVRKTAAMGLGKLFHDDMQ 173 (746)
T ss_pred HhcCCCHHHHHHHHHHHHHHHhhCcc
Confidence 99999999998888888888888874
No 9
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=96.60 E-value=0.12 Score=56.33 Aligned_cols=251 Identities=15% Similarity=0.202 Sum_probs=156.7
Q ss_pred hhHHHHHHHhc-CCHHHHHHHhhhhhHHhccCCCcchHHHHHhhhhhcccchhHHHHHhhccccccccCcchhhhHHHHH
Q 008865 32 KDYEGIIEAAK-TSLKAKQLAAQLIPRFFKFFPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDIL 110 (550)
Q Consensus 32 ~~y~~Il~~~K-gs~k~K~LAaQfI~kffk~FP~L~e~Ai~a~lDLcEDed~~IR~qaik~Lp~lck~~~e~~~riaDVL 110 (550)
..|-.++.... .+...|||+==++..|+..=|++.--++|++..=+.+.++.||--|++.|..+| +|+.+.-+.+.+
T Consensus 42 ~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~~~~~l~~n~l~kdl~~~n~~~~~lAL~~l~~i~--~~~~~~~l~~~v 119 (526)
T PF01602_consen 42 FLFMEVIKLISSKDLELKRLGYLYLSLYLHEDPELLILIINSLQKDLNSPNPYIRGLALRTLSNIR--TPEMAEPLIPDV 119 (526)
T ss_dssp STHHHHHCTCSSSSHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHH---SHHHHHHHHHHH
T ss_pred hHHHHHHHHhCCCCHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhhcCCCHHHHHHHHhhhhhhc--ccchhhHHHHHH
Confidence 45666676655 778999999999999999999999999999999899999999999999999999 789999999999
Q ss_pred HHHHhhchhHHHHHHHHHHHHHHhhchHHH---HHHHHHhhccCCCCCChHHHHHHHHHHHhhhcccchhhhcCChHHHH
Q 008865 111 VQLLAAEEIVERDAVHKALMSLLRQDVKAS---LTALFKHIGSVDEPSTDEFIREKVLSFIRDKVFPLKAELLKPQEEME 187 (550)
Q Consensus 111 ~QLLqsdd~~E~~~v~~aL~sllk~D~k~t---Lt~lf~qI~~~~e~~~eE~vREr~lkFl~~kl~~l~~e~l~~~eE~E 187 (550)
.++|.+.++..+..+=-++..+++.+|... +...+.++.. +.+..|+.-++..+..= ..-+.... ..-
T Consensus 120 ~~ll~~~~~~VRk~A~~~l~~i~~~~p~~~~~~~~~~l~~lL~----d~~~~V~~~a~~~l~~i-~~~~~~~~----~~~ 190 (526)
T PF01602_consen 120 IKLLSDPSPYVRKKAALALLKIYRKDPDLVEDELIPKLKQLLS----DKDPSVVSAALSLLSEI-KCNDDSYK----SLI 190 (526)
T ss_dssp HHHHHSSSHHHHHHHHHHHHHHHHHCHCCHHGGHHHHHHHHTT----HSSHHHHHHHHHHHHHH-HCTHHHHT----THH
T ss_pred HHHhcCCchHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhhcc----CCcchhHHHHHHHHHHH-ccCcchhh----hhH
Confidence 999999999888888889999998877642 2333334431 33345777777666532 11111110 222
Q ss_pred HHHHHHHHhhhcccchHHHHHHHHHHhhccccCCCCchhHH-HHHHHHHHHhhcccccCCCCChhhHHHHHHHHHHhhhh
Q 008865 188 RHITDLIKKSLEDVTGAEFRMFMDFLKSLSLFGEKAPTERM-KELIGIIEGQADLDAQFNVSDADHIDRLISCLYMALPF 266 (550)
Q Consensus 188 e~i~~~ikKvL~dVt~~EF~l~m~lL~sL~~~~~~~~~gr~-qeLv~~i~eqa~Ld~~f~~sD~d~idRli~cl~~Alp~ 266 (550)
..+...+.+.+.+ ..+|.. +.+++.+..+....+.... ..+++.+..... ..++ .| +++|++...-+
T Consensus 191 ~~~~~~L~~~l~~--~~~~~q-~~il~~l~~~~~~~~~~~~~~~~i~~l~~~l~------s~~~-~V--~~e~~~~i~~l 258 (526)
T PF01602_consen 191 PKLIRILCQLLSD--PDPWLQ-IKILRLLRRYAPMEPEDADKNRIIEPLLNLLQ------SSSP-SV--VYEAIRLIIKL 258 (526)
T ss_dssp HHHHHHHHHHHTC--CSHHHH-HHHHHHHTTSTSSSHHHHHHHHHHHHHHHHHH------HHHH-HH--HHHHHHHHHHH
T ss_pred HHHHHHhhhcccc--cchHHH-HHHHHHHHhcccCChhhhhHHHHHHHHHHHhh------cccc-HH--HHHHHHHHHHh
Confidence 2233333333333 344532 2233333344333332210 235666655432 1111 11 23444333322
Q ss_pred hccCCCchhHHHHHHhhhcccCCCCChhhhhhHHHHHHHhCCC
Q 008865 267 FLRGASGSKFLNYLNKHIIPVFDKLPEERKLDLLKALAEISPY 309 (550)
Q Consensus 267 fs~~v~st~f~~y~~~~IlP~l~~L~~~~kl~lLK~lAE~s~~ 309 (550)
. ++..++..++..+...+..=++..|.-.|..+..++..
T Consensus 259 ~----~~~~~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~ 297 (526)
T PF01602_consen 259 S----PSPELLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQS 297 (526)
T ss_dssp S----SSHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCH
T ss_pred h----cchHHHHhhHHHHHHHhhcccchhehhHHHHHHHhhcc
Confidence 1 22234555555555555533456788888888888774
No 10
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=96.51 E-value=0.01 Score=48.99 Aligned_cols=75 Identities=24% Similarity=0.301 Sum_probs=54.0
Q ss_pred CCHHHHHHHhhhhhHHhccCCCcchHHHHHhhhhhcccchhHHHHHhhccccccccCcchhhhHHHHHHHHHhhchhHH-
Q 008865 43 TSLKAKQLAAQLIPRFFKFFPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQLLAAEEIVE- 121 (550)
Q Consensus 43 gs~k~K~LAaQfI~kffk~FP~L~e~Ai~a~lDLcEDed~~IR~qaik~Lp~lck~~~e~~~riaDVL~QLLqsdd~~E- 121 (550)
+++.++.-|+..+.++- ..+++..++.++.|+|+.||.+|+..|-.+- -++..+.|.++|++++...
T Consensus 12 ~~~~vr~~a~~~L~~~~------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~------~~~~~~~L~~~l~~~~~~~v 79 (88)
T PF13646_consen 12 PDPQVRAEAARALGELG------DPEAIPALIELLKDEDPMVRRAAARALGRIG------DPEAIPALIKLLQDDDDEVV 79 (88)
T ss_dssp SSHHHHHHHHHHHHCCT------HHHHHHHHHHHHTSSSHHHHHHHHHHHHCCH------HHHTHHHHHHHHTC-SSHHH
T ss_pred CCHHHHHHHHHHHHHcC------CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhC------CHHHHHHHHHHHcCCCcHHH
Confidence 67778888888877442 3478888888888988889999998888884 2468888888888865432
Q ss_pred HHHHHHHH
Q 008865 122 RDAVHKAL 129 (550)
Q Consensus 122 ~~~v~~aL 129 (550)
+..+-.||
T Consensus 80 r~~a~~aL 87 (88)
T PF13646_consen 80 REAAAEAL 87 (88)
T ss_dssp HHHHHHHH
T ss_pred HHHHHhhc
Confidence 44444443
No 11
>PTZ00429 beta-adaptin; Provisional
Probab=96.46 E-value=1 Score=52.91 Aligned_cols=284 Identities=11% Similarity=0.101 Sum_probs=160.2
Q ss_pred hhhHHhccCCCcchHHHHHhhhhhcccchhHHHHHhhccccccccCcchhhhHHHHHHHHHhhchhHHHHHHHHHHHHHH
Q 008865 54 LIPRFFKFFPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQLLAAEEIVERDAVHKALMSLL 133 (550)
Q Consensus 54 fI~kffk~FP~L~e~Ai~a~lDLcEDed~~IR~qaik~Lp~lck~~~e~~~riaDVL~QLLqsdd~~E~~~v~~aL~sll 133 (550)
...+||..-..=.-..|-..| +..+..-|+.|+|-+-....-+.+.-.=..||+- +++|++.....+|.-.|+.+.
T Consensus 21 ~~~~~f~~~~kge~~ELr~~L---~s~~~~~kk~alKkvIa~mt~G~DvS~LF~dVvk-~~~S~d~elKKLvYLYL~~ya 96 (746)
T PTZ00429 21 TGSKYFAQTRRGEGAELQNDL---NGTDSYRKKAAVKRIIANMTMGRDVSYLFVDVVK-LAPSTDLELKKLVYLYVLSTA 96 (746)
T ss_pred CccccccccccchHHHHHHHH---HCCCHHHHHHHHHHHHHHHHCCCCchHHHHHHHH-HhCCCCHHHHHHHHHHHHHHc
Confidence 345677543222223444444 4556778899999888777666565555788876 999999999999999999999
Q ss_pred hhchHH---HHHHHHHhhccCCCCCChHHHHHHHHHHHhhhcccchhhhcCChHHHHHHHHHHHHhhhcccchHHH-HHH
Q 008865 134 RQDVKA---SLTALFKHIGSVDEPSTDEFIREKVLSFIRDKVFPLKAELLKPQEEMERHITDLIKKSLEDVTGAEF-RMF 209 (550)
Q Consensus 134 k~D~k~---tLt~lf~qI~~~~e~~~eE~vREr~lkFl~~kl~~l~~e~l~~~eE~Ee~i~~~ikKvL~dVt~~EF-~l~ 209 (550)
+.+|.- +++.|.+.+. +.++.+|-.+|.+|+.-. ..++-++++..|++.|.|-++-=- .-.
T Consensus 97 ~~~pelalLaINtl~KDl~-----d~Np~IRaLALRtLs~Ir----------~~~i~e~l~~~lkk~L~D~~pYVRKtAa 161 (746)
T PTZ00429 97 RLQPEKALLAVNTFLQDTT-----NSSPVVRALAVRTMMCIR----------VSSVLEYTLEPLRRAVADPDPYVRKTAA 161 (746)
T ss_pred ccChHHHHHHHHHHHHHcC-----CCCHHHHHHHHHHHHcCC----------cHHHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 998884 4566666665 567889999999887411 346777888889999887653111 123
Q ss_pred HHHHhhccccCCCCchhH-HHHHHHHHHHhhc---------ccccCCCCC-------hhhHHHHHHHHHH--------hh
Q 008865 210 MDFLKSLSLFGEKAPTER-MKELIGIIEGQAD---------LDAQFNVSD-------ADHIDRLISCLYM--------AL 264 (550)
Q Consensus 210 m~lL~sL~~~~~~~~~gr-~qeLv~~i~eqa~---------Ld~~f~~sD-------~d~idRli~cl~~--------Al 264 (550)
|-+++-.....+.-+... ..+|.+++.++.- |. .+...+ ..++.+++..+.. .+
T Consensus 162 lai~Kly~~~pelv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~-eI~~~~~~~l~l~~~~~~~Ll~~L~e~~EW~Qi~IL 240 (746)
T PTZ00429 162 MGLGKLFHDDMQLFYQQDFKKDLVELLNDNNPVVASNAAAIVC-EVNDYGSEKIESSNEWVNRLVYHLPECNEWGQLYIL 240 (746)
T ss_pred HHHHHHHhhCcccccccchHHHHHHHhcCCCccHHHHHHHHHH-HHHHhCchhhHHHHHHHHHHHHHhhcCChHHHHHHH
Confidence 444443322211101100 1223333221100 00 000111 1222333332211 11
Q ss_pred hhhccCCC-chhHHHHHHhhhcccCCCCChhhhhhHHHHHHHhCCCCCchhhhhhhHHHHHHHHhhCCCCCCCCCccchH
Q 008865 265 PFFLRGAS-GSKFLNYLNKHIIPVFDKLPEERKLDLLKALAEISPYTTPQDSRQILPSVAVLLKKYMPLRKTGGEEMNFT 343 (550)
Q Consensus 265 p~fs~~v~-st~f~~y~~~~IlP~l~~L~~~~kl~lLK~lAE~s~~~~~~~a~~~l~~i~~~L~~~mP~~~~~~~~l~fS 343 (550)
-++.+..+ ......-+++.++|.|..-....-+...|++..+++++.+.-..+++..+-..|+... ...++.+|.
T Consensus 241 ~lL~~y~P~~~~e~~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~~~~~~~~~~~rl~~pLv~L~----ss~~eiqyv 316 (746)
T PTZ00429 241 ELLAAQRPSDKESAETLLTRVLPRMSHQNPAVVMGAIKVVANLASRCSQELIERCTVRVNTALLTLS----RRDAETQYI 316 (746)
T ss_pred HHHHhcCCCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHHHHHhh----CCCccHHHH
Confidence 11223322 2333445666677766666556778888888888777643322333222222222222 124678888
Q ss_pred HHHHHHHHHHHhhhcCchhhhh
Q 008865 344 YVECLLYTFHHLAHKAPNATNS 365 (550)
Q Consensus 344 ~vEcLL~afh~L~~k~p~~l~~ 365 (550)
.+..+ +.+..++|..|..
T Consensus 317 aLr~I----~~i~~~~P~lf~~ 334 (746)
T PTZ00429 317 VCKNI----HALLVIFPNLLRT 334 (746)
T ss_pred HHHHH----HHHHHHCHHHHHH
Confidence 77664 6667788988865
No 12
>KOG3973 consensus Uncharacterized conserved glycine-rich protein [Function unknown]
Probab=96.39 E-value=0.67 Score=49.50 Aligned_cols=26 Identities=69% Similarity=1.182 Sum_probs=16.8
Q ss_pred CCCCCCCC---CCCCcccCCCCCCCCCCC
Q 008865 524 GISRGGRG---GIRGRGRGWGARGRGRGY 549 (550)
Q Consensus 524 g~~~~~~~---g~rgrgr~~g~~gr~~~~ 549 (550)
|-+|||++ |+||+|||.||||.|+||
T Consensus 356 gg~Rgg~Gg~~gGrGgGRGggG~GGGggy 384 (465)
T KOG3973|consen 356 GGSRGGSGGNWGGRGGGRGGGGRGGGGGY 384 (465)
T ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Confidence 44565544 466666666677777786
No 13
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.33 E-value=0.29 Score=60.15 Aligned_cols=116 Identities=25% Similarity=0.334 Sum_probs=91.2
Q ss_pred ChhhHHHHHHHhc-CCHHHHHHHhhhhhHHhccCCCcchHHHHHhhhhhcccchhHHHHHhhccccccccCcchhhhHHH
Q 008865 30 NVKDYEGIIEAAK-TSLKAKQLAAQLIPRFFKFFPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVD 108 (550)
Q Consensus 30 ~~~~y~~Il~~~K-gs~k~K~LAaQfI~kffk~FP~L~e~Ai~a~lDLcEDed~~IR~qaik~Lp~lck~~~e~~~riaD 108 (550)
|.+--.++..-.- .+..++.=|=-++.||.-..|++..+=.+.+..=.-|..+.||+-|||=|-++|-++|+ .+++.|
T Consensus 853 ~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~~~e~~~qyY~~i~erIlDtgvsVRKRvIKIlrdic~e~pd-f~~i~~ 931 (1692)
T KOG1020|consen 853 RPDVQEAVHGRLNDSSASVREAALDLVGRFVLSIPELIFQYYDQIIERILDTGVSVRKRVIKILRDICEETPD-FSKIVD 931 (1692)
T ss_pred CHHHHHHHHHhhccchhHHHHHHHHHHhhhhhccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCC-hhhHHH
Confidence 3333344444333 67888989999999999999999999999999999999999999999999999999987 678999
Q ss_pred HHHHHHhh---chhHHHHHHHHHHHHHHhh------chHHHHHHHHH
Q 008865 109 ILVQLLAA---EEIVERDAVHKALMSLLRQ------DVKASLTALFK 146 (550)
Q Consensus 109 VL~QLLqs---dd~~E~~~v~~aL~sllk~------D~k~tLt~lf~ 146 (550)
+.+.+|-- ||..--..|...+..++=. |.++..+.++.
T Consensus 932 ~cakmlrRv~DEEg~I~kLv~etf~klWF~p~~~~~d~~~~~~kI~~ 978 (1692)
T KOG1020|consen 932 MCAKMLRRVNDEEGNIKKLVRETFLKLWFTPVPEVNDQPAKARKISL 978 (1692)
T ss_pred HHHHHHHHhccchhHHHHHHHHHHHHHhccCCCcccccHHHHHhhHH
Confidence 99999864 4444778888888887743 44444444444
No 14
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=96.23 E-value=0.018 Score=50.28 Aligned_cols=83 Identities=17% Similarity=0.187 Sum_probs=75.1
Q ss_pred hHHHHHhhhhhcccchhHHHHHhhccccccccCc---chhhhHHHHHHHHHhhchhHHHHHHHHHHHHHHhhchHHHHHH
Q 008865 67 SRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTP---EYLSKIVDILVQLLAAEEIVERDAVHKALMSLLRQDVKASLTA 143 (550)
Q Consensus 67 e~Ai~a~lDLcEDed~~IR~qaik~Lp~lck~~~---e~~~riaDVL~QLLqsdd~~E~~~v~~aL~sllk~D~k~tLt~ 143 (550)
.++++..+....|..+.||..|+..|-.+.+... ..++++.+++.+.|..+|+=..-.+=++|.+|...+|..++..
T Consensus 2 ~~~~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~~vl~~ 81 (92)
T PF10363_consen 2 RETLQEALSDLNDPLPPVRAHGLVLLRKLIESKSEPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPDEVLPI 81 (92)
T ss_pred hHHHHHHHHHccCCCcchHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChHHHHHH
Confidence 4567777888889999999999999999998876 6788999999999999999999899999999999999999999
Q ss_pred HHHhhc
Q 008865 144 LFKHIG 149 (550)
Q Consensus 144 lf~qI~ 149 (550)
|+..-.
T Consensus 82 L~~~y~ 87 (92)
T PF10363_consen 82 LLDEYA 87 (92)
T ss_pred HHHHHh
Confidence 988765
No 15
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=96.18 E-value=0.017 Score=49.36 Aligned_cols=98 Identities=19% Similarity=0.203 Sum_probs=70.2
Q ss_pred hHHHHHhhhhhcccchhHHHHHhhccccccccCcchhhh-----HHHHHHHHHhhchhHHHHHHHHHHHHHHhhchH---
Q 008865 67 SRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSK-----IVDILVQLLAAEEIVERDAVHKALMSLLRQDVK--- 138 (550)
Q Consensus 67 e~Ai~a~lDLcEDed~~IR~qaik~Lp~lck~~~e~~~r-----iaDVL~QLLqsdd~~E~~~v~~aL~sllk~D~k--- 138 (550)
...+..+++++.|.+..+|..|+..|-.+|..+|++... +.+.|.++|.++++.-+..+-.+|..|....+.
T Consensus 6 ~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~ 85 (120)
T cd00020 6 AGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKL 85 (120)
T ss_pred cCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHH
Confidence 346788889999999999999999999999987666443 567899999998887777777787777765432
Q ss_pred -----HHHHHHHHhhccCCCCCChHHHHHHHHHHHh
Q 008865 139 -----ASLTALFKHIGSVDEPSTDEFIREKVLSFIR 169 (550)
Q Consensus 139 -----~tLt~lf~qI~~~~e~~~eE~vREr~lkFl~ 169 (550)
+.+..+...+. .++..+|+.++.+|.
T Consensus 86 ~~~~~g~l~~l~~~l~-----~~~~~~~~~a~~~l~ 116 (120)
T cd00020 86 IVLEAGGVPKLVNLLD-----SSNEDIQKNATGALS 116 (120)
T ss_pred HHHHCCChHHHHHHHh-----cCCHHHHHHHHHHHH
Confidence 23444455444 334556666665544
No 16
>PRK09687 putative lyase; Provisional
Probab=96.13 E-value=0.089 Score=54.39 Aligned_cols=129 Identities=19% Similarity=0.184 Sum_probs=92.0
Q ss_pred ChhhHHHHHHHhc-CCHHHHHHHhhhhhHHhccCCCcchHHHHHhhhh-hcccchhHHHHHhhccccccccCcchhhhHH
Q 008865 30 NVKDYEGIIEAAK-TSLKAKQLAAQLIPRFFKFFPDLSSRAVDAHLDL-IEEEELGVRVQAIRGLPLFCKDTPEYLSKIV 107 (550)
Q Consensus 30 ~~~~y~~Il~~~K-gs~k~K~LAaQfI~kffk~FP~L~e~Ai~a~lDL-cEDed~~IR~qaik~Lp~lck~~~e~~~ria 107 (550)
..+.+..+..+.+ .++.+.+.|+.-+..+ ++=+.-+.+++..+..+ .+|.|..||..|+..|-.+|...+.+.++..
T Consensus 52 ~~~~~~~l~~ll~~~d~~vR~~A~~aLg~l-g~~~~~~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~~~~a~ 130 (280)
T PRK09687 52 GQDVFRLAIELCSSKNPIERDIGADILSQL-GMAKRCQDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLYSPKIV 130 (280)
T ss_pred cchHHHHHHHHHhCCCHHHHHHHHHHHHhc-CCCccchHHHHHHHHHHHhcCCCHHHHHHHHHHHhcccccccccchHHH
Confidence 3455666666666 6777888888777764 33222256788888887 7899999999999999999988887888888
Q ss_pred HHHHHHHhhchhHHHHHHHHHHHHHHhhchHHHHHHHHHhhccCCCCCChHHHHHHHHHH
Q 008865 108 DILVQLLAAEEIVERDAVHKALMSLLRQDVKASLTALFKHIGSVDEPSTDEFIREKVLSF 167 (550)
Q Consensus 108 DVL~QLLqsdd~~E~~~v~~aL~sllk~D~k~tLt~lf~qI~~~~e~~~eE~vREr~lkF 167 (550)
..|..++.++++..+-.+=.||-. +....++..|+.-+. ..+..||..++.-
T Consensus 131 ~~l~~~~~D~~~~VR~~a~~aLg~---~~~~~ai~~L~~~L~-----d~~~~VR~~A~~a 182 (280)
T PRK09687 131 EQSQITAFDKSTNVRFAVAFALSV---INDEAAIPLLINLLK-----DPNGDVRNWAAFA 182 (280)
T ss_pred HHHHHHhhCCCHHHHHHHHHHHhc---cCCHHHHHHHHHHhc-----CCCHHHHHHHHHH
Confidence 888888888888877777777643 333445666666664 3444577766653
No 17
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=95.96 E-value=0.072 Score=51.06 Aligned_cols=89 Identities=24% Similarity=0.299 Sum_probs=75.0
Q ss_pred chhHHHHHhhccccccccCcchhhhHHHHHHHHHhhchhHHHHHHHHHHHHHHhhch---HHHH-HHHHHhhccCCCCCC
Q 008865 81 ELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQLLAAEEIVERDAVHKALMSLLRQDV---KASL-TALFKHIGSVDEPST 156 (550)
Q Consensus 81 d~~IR~qaik~Lp~lck~~~e~~~riaDVL~QLLqsdd~~E~~~v~~aL~sllk~D~---k~tL-t~lf~qI~~~~e~~~ 156 (550)
|+.||..++-.+.++|.-.|..+....+-|..+|.++++..+..+=..|..|+..|. ++.+ ..++.-+. .+
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k~~l~~~~l~~l~-----D~ 75 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKVKGQLFSRILKLLV-----DE 75 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceeehhhhhHHHHHHHc-----CC
Confidence 578999999999999999999999999999999999999999999999999888864 5555 55565554 55
Q ss_pred hHHHHHHHHHHHhhhccc
Q 008865 157 DEFIREKVLSFIRDKVFP 174 (550)
Q Consensus 157 eE~vREr~lkFl~~kl~~ 174 (550)
++.+|.-+..|+.+-...
T Consensus 76 ~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 76 NPEIRSLARSFFSELLKK 93 (178)
T ss_pred CHHHHHHHHHHHHHHHHh
Confidence 678999999998875544
No 18
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=95.90 E-value=0.031 Score=46.06 Aligned_cols=84 Identities=29% Similarity=0.402 Sum_probs=62.4
Q ss_pred HHHhhhhh-cccchhHHHHHhhccccccccCcchhhhHHHHHHHHHhhchhHHHHHHHHHHHHHHhhchHHHHHHHHHhh
Q 008865 70 VDAHLDLI-EEEELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQLLAAEEIVERDAVHKALMSLLRQDVKASLTALFKHI 148 (550)
Q Consensus 70 i~a~lDLc-EDed~~IR~qaik~Lp~lck~~~e~~~riaDVL~QLLqsdd~~E~~~v~~aL~sllk~D~k~tLt~lf~qI 148 (550)
|+.+++++ +|+++.||..|++.|-.+.. +++.+.|.++|+++++..+..+-.+|- ++.....+..|...+
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~~------~~~~~~L~~~l~d~~~~vr~~a~~aL~---~i~~~~~~~~L~~~l 71 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELGD------PEAIPALIELLKDEDPMVRRAAARALG---RIGDPEAIPALIKLL 71 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCTH------HHHHHHHHHHHTSSSHHHHHHHHHHHH---CCHHHHTHHHHHHHH
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcCC------HhHHHHHHHHHcCCCHHHHHHHHHHHH---HhCCHHHHHHHHHHH
Confidence 56788988 99999999999999997753 378999999998888876666655555 455566777777766
Q ss_pred ccCCCCCChHHHHHHHHH
Q 008865 149 GSVDEPSTDEFIREKVLS 166 (550)
Q Consensus 149 ~~~~e~~~eE~vREr~lk 166 (550)
.+ +.+..+|+-++.
T Consensus 72 ~~----~~~~~vr~~a~~ 85 (88)
T PF13646_consen 72 QD----DDDEVVREAAAE 85 (88)
T ss_dssp TC-----SSHHHHHHHHH
T ss_pred cC----CCcHHHHHHHHh
Confidence 52 234567877664
No 19
>PRK09687 putative lyase; Provisional
Probab=95.82 E-value=0.11 Score=53.84 Aligned_cols=126 Identities=17% Similarity=0.082 Sum_probs=99.7
Q ss_pred hhHHHHHHH-hc-CCHHHHHHHhhhhhHHhccCCCcchHHHHHhhhhhcccchhHHHHHhhccccccccCcchhhhHHHH
Q 008865 32 KDYEGIIEA-AK-TSLKAKQLAAQLIPRFFKFFPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDI 109 (550)
Q Consensus 32 ~~y~~Il~~-~K-gs~k~K~LAaQfI~kffk~FP~L~e~Ai~a~lDLcEDed~~IR~qaik~Lp~lck~~~e~~~riaDV 109 (550)
+.+..+... .+ .++.+..-|+.-+..+-..-+....+|++.+.-+..|++..||..|+..|..+.. ....+.
T Consensus 90 ~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~------~~ai~~ 163 (280)
T PRK09687 90 NVFNILNNLALEDKSACVRASAINATGHRCKKNPLYSPKIVEQSQITAFDKSTNVRFAVAFALSVIND------EAAIPL 163 (280)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHhcccccccccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCC------HHHHHH
Confidence 445555544 34 7788898999999888777777778899988888999999999999999987752 368899
Q ss_pred HHHHHhhchhHHHHHHHHHHHHHHhhchHHHHHHHHHhhccCCCCCChHHHHHHHHHHHh
Q 008865 110 LVQLLAAEEIVERDAVHKALMSLLRQDVKASLTALFKHIGSVDEPSTDEFIREKVLSFIR 169 (550)
Q Consensus 110 L~QLLqsdd~~E~~~v~~aL~sllk~D~k~tLt~lf~qI~~~~e~~~eE~vREr~lkFl~ 169 (550)
|.++|..+++..+..+-.+|-.+ ..+...+...|..-+. ..++.||..++.-|.
T Consensus 164 L~~~L~d~~~~VR~~A~~aLg~~-~~~~~~~~~~L~~~L~-----D~~~~VR~~A~~aLg 217 (280)
T PRK09687 164 LINLLKDPNGDVRNWAAFALNSN-KYDNPDIREAFVAMLQ-----DKNEEIRIEAIIGLA 217 (280)
T ss_pred HHHHhcCCCHHHHHHHHHHHhcC-CCCCHHHHHHHHHHhc-----CCChHHHHHHHHHHH
Confidence 99999999998777777777776 4456677777777775 667789999887664
No 20
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.59 E-value=0.63 Score=54.05 Aligned_cols=250 Identities=20% Similarity=0.194 Sum_probs=150.4
Q ss_pred CCCcchHHHHHhhhhhcccchhHHHHHhhccccccccCcchhhhHHHHHHHHHhhchhHHHHHHHHHHHHHHhhchHHHH
Q 008865 62 FPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQLLAAEEIVERDAVHKALMSLLRQDVKASL 141 (550)
Q Consensus 62 FP~L~e~Ai~a~lDLcEDed~~IR~qaik~Lp~lck~~~e~~~riaDVL~QLLqsdd~~E~~~v~~aL~sllk~D~k~tL 141 (550)
=|+|-+.=+-++.+-.|-.-+=||+.||-++..|-|.....++...+++.-.|.+|. +-.--+||++.|+..||.-+|
T Consensus 128 E~ELlepl~p~IracleHrhsYVRrNAilaifsIyk~~~~L~pDapeLi~~fL~~e~--DpsCkRNAFi~L~~~D~ErAl 205 (948)
T KOG1058|consen 128 EPELLEPLMPSIRACLEHRHSYVRRNAILAIFSIYKNFEHLIPDAPELIESFLLTEQ--DPSCKRNAFLMLFTTDPERAL 205 (948)
T ss_pred cHHHhhhhHHHHHHHHhCcchhhhhhhheeehhHHhhhhhhcCChHHHHHHHHHhcc--CchhHHHHHHHHHhcCHHHHH
Confidence 488999999999999999999999999999999999876778889999998888874 456779999999999987776
Q ss_pred HHHHHhhccCCCCCChHHHHHHHHHHHhhhcccchhhhcCChHHHHHHHHHHHHhhhcccchHH----HHHHHHHHhhcc
Q 008865 142 TALFKHIGSVDEPSTDEFIREKVLSFIRDKVFPLKAELLKPQEEMERHITDLIKKSLEDVTGAE----FRMFMDFLKSLS 217 (550)
Q Consensus 142 t~lf~qI~~~~e~~~eE~vREr~lkFl~~kl~~l~~e~l~~~eE~Ee~i~~~ikKvL~dVt~~E----F~l~m~lL~sL~ 217 (550)
.-+.+-|. +++ .++...+-.|++.|+|+-.. +.+| |..+|.+|.+..
T Consensus 206 ~Yl~~~id------------------------qi~----~~~~~LqlViVE~Irkv~~~-~p~~~~~~i~~i~~lL~sts 256 (948)
T KOG1058|consen 206 NYLLSNID------------------------QIP----SFNDSLQLVIVELIRKVCLA-NPAEKARYIRCIYNLLSSTS 256 (948)
T ss_pred HHHHhhHh------------------------hcc----CccHHHHHHHHHHHHHHHhc-CHHHhhHHHHHHHHHHhcCC
Confidence 66555543 222 34567777778888776542 2333 345566666552
Q ss_pred ccCCCCchhHHHHHHHHHHHhhc-ccccCCCCChhhHHHHHHHHHHhhhhhccC--------------CCchhHHHHHHh
Q 008865 218 LFGEKAPTERMKELIGIIEGQAD-LDAQFNVSDADHIDRLISCLYMALPFFLRG--------------ASGSKFLNYLNK 282 (550)
Q Consensus 218 ~~~~~~~~gr~qeLv~~i~eqa~-Ld~~f~~sD~d~idRli~cl~~Alp~fs~~--------------v~st~f~~y~~~ 282 (550)
.. -+ . |-|+ |-.. +.||..|.+..+|.-..+---|.+ ...-+.++=+.-
T Consensus 257 sa------V~-f-------Eaa~tlv~l--S~~p~alk~Aa~~~i~l~~kesdnnvklIvldrl~~l~~~~~~il~~l~m 320 (948)
T KOG1058|consen 257 SA------VI-F-------EAAGTLVTL--SNDPTALKAAASTYIDLLVKESDNNVKLIVLDRLSELKALHEKILQGLIM 320 (948)
T ss_pred ch------hh-h-------hhcceEEEc--cCCHHHHHHHHHHHHHHHHhccCcchhhhhHHHHHHHhhhhHHHHHHHHH
Confidence 21 00 1 1111 1111 344555543333322211111111 111222333333
Q ss_pred hhcccCCCCChhhhhhHHHHHHHhCCCCCchhhhhhhHHHHHHHHhhCCCCCCCCCccchHHHHHHHHHHHHhhhcCchh
Q 008865 283 HIIPVFDKLPEERKLDLLKALAEISPYTTPQDSRQILPSVAVLLKKYMPLRKTGGEEMNFTYVECLLYTFHHLAHKAPNA 362 (550)
Q Consensus 283 ~IlP~l~~L~~~~kl~lLK~lAE~s~~~~~~~a~~~l~~i~~~L~~~mP~~~~~~~~l~fS~vEcLL~afh~L~~k~p~~ 362 (550)
.||++|+.=+-+.+-..|-.--.++ ..-.++.+.+.|++-+-....++-+=+-.|=-.|+=++|..+-++|+.
T Consensus 321 DvLrvLss~dldvr~Ktldi~ldLv-------ssrNvediv~~Lkke~~kT~~~e~d~~~~yRqlLiktih~cav~Fp~~ 393 (948)
T KOG1058|consen 321 DVLRVLSSPDLDVRSKTLDIALDLV-------SSRNVEDIVQFLKKEVMKTHNEESDDNGKYRQLLIKTIHACAVKFPEV 393 (948)
T ss_pred HHHHHcCcccccHHHHHHHHHHhhh-------hhccHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHhhcChHH
Confidence 5555555321122212222222221 222456677777765543333355667788888999999999999986
Q ss_pred hhh
Q 008865 363 TNS 365 (550)
Q Consensus 363 l~~ 365 (550)
...
T Consensus 394 aat 396 (948)
T KOG1058|consen 394 AAT 396 (948)
T ss_pred HHH
Confidence 543
No 21
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.22 E-value=1.9 Score=50.21 Aligned_cols=115 Identities=21% Similarity=0.266 Sum_probs=94.7
Q ss_pred HHHHHHHhc-CCHHHHHHHhhhhhHHhccCCCcchHHHHHhhhhhcccchhHHHHHhhccccccccCcchhhhHHHHHHH
Q 008865 34 YEGIIEAAK-TSLKAKQLAAQLIPRFFKFFPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQ 112 (550)
Q Consensus 34 y~~Il~~~K-gs~k~K~LAaQfI~kffk~FP~L~e~Ai~a~lDLcEDed~~IR~qaik~Lp~lck~~~e~~~riaDVL~Q 112 (550)
|-..+.... .+-..|+|.=.-+-.|-+--|+++.-|+|.+++=|+|+++.||.-|||.+-.+-.+ ..+..+.|=|.-
T Consensus 51 F~dvvk~~~T~dlelKKlvyLYl~nYa~~~P~~a~~avnt~~kD~~d~np~iR~lAlrtm~~l~v~--~i~ey~~~Pl~~ 128 (734)
T KOG1061|consen 51 FPDVVKCMQTRDLELKKLVYLYLMNYAKGKPDLAILAVNTFLKDCEDPNPLIRALALRTMGCLRVD--KITEYLCDPLLK 128 (734)
T ss_pred hHHHHhhcccCCchHHHHHHHHHHHhhccCchHHHhhhhhhhccCCCCCHHHHHHHhhceeeEeeh--HHHHHHHHHHHH
Confidence 333344344 55789999999999999999999999999999999999999999999999887765 456668888888
Q ss_pred HHhhchhHHHHHHHHHHHHHHhhchHH----HHHHHHHhhcc
Q 008865 113 LLAAEEIVERDAVHKALMSLLRQDVKA----SLTALFKHIGS 150 (550)
Q Consensus 113 LLqsdd~~E~~~v~~aL~sllk~D~k~----tLt~lf~qI~~ 150 (550)
+|.+++|-++..|.-+...+++.|+.- .|-..++++.+
T Consensus 129 ~l~d~~~yvRktaa~~vakl~~~~~~~~~~~gl~~~L~~ll~ 170 (734)
T KOG1061|consen 129 CLKDDDPYVRKTAAVCVAKLFDIDPDLVEDSGLVDALKDLLS 170 (734)
T ss_pred hccCCChhHHHHHHHHHHHhhcCChhhccccchhHHHHHHhc
Confidence 999999999999999999999997752 34444555553
No 22
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=94.95 E-value=0.14 Score=43.52 Aligned_cols=90 Identities=19% Similarity=0.097 Sum_probs=70.2
Q ss_pred CCHHHHHHHhhhhhHHhccCCCcch-----HHHHHhhhhhcccchhHHHHHhhccccccccCcchhhh-----HHHHHHH
Q 008865 43 TSLKAKQLAAQLIPRFFKFFPDLSS-----RAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSK-----IVDILVQ 112 (550)
Q Consensus 43 gs~k~K~LAaQfI~kffk~FP~L~e-----~Ai~a~lDLcEDed~~IR~qaik~Lp~lck~~~e~~~r-----iaDVL~Q 112 (550)
++...+.-|..-+..+.+..|+... .++..++++..|+++.||..|+..|-.+|.+.++.... +..+|.+
T Consensus 19 ~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~l~~ 98 (120)
T cd00020 19 SDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKLIVLEAGGVPKLVN 98 (120)
T ss_pred CCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHHHHHHCCChHHHHH
Confidence 5677777777777777777665544 56678899999999999999999999999988664332 5778899
Q ss_pred HHhhchhHHHHHHHHHHHHH
Q 008865 113 LLAAEEIVERDAVHKALMSL 132 (550)
Q Consensus 113 LLqsdd~~E~~~v~~aL~sl 132 (550)
+|++++...+..+-.+|.+|
T Consensus 99 ~l~~~~~~~~~~a~~~l~~l 118 (120)
T cd00020 99 LLDSSNEDIQKNATGALSNL 118 (120)
T ss_pred HHhcCCHHHHHHHHHHHHHh
Confidence 99988877777776666655
No 23
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=94.86 E-value=1.5 Score=45.10 Aligned_cols=226 Identities=18% Similarity=0.264 Sum_probs=120.4
Q ss_pred cccchhHHHHHhhccccccccCc-chhhh-HHHHHHHHHhh--chhHHHHHHHHHHHHHHhh------chHHHHHHHHHh
Q 008865 78 EEEELGVRVQAIRGLPLFCKDTP-EYLSK-IVDILVQLLAA--EEIVERDAVHKALMSLLRQ------DVKASLTALFKH 147 (550)
Q Consensus 78 EDed~~IR~qaik~Lp~lck~~~-e~~~r-iaDVL~QLLqs--dd~~E~~~v~~aL~sllk~------D~k~tLt~lf~q 147 (550)
-++|..+|..|+.-|..+...-| +.+++ =+-+|++.+.+ +|..-+..+=++|.+|+++ .....+..+|++
T Consensus 9 tsed~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~~~~~~~~~~~~~i~~~l~~~ 88 (262)
T PF14500_consen 9 TSEDPIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRLDDHACVQPALKGLLALVKMKNFSPESAVKILRSLFQN 88 (262)
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhCcCCChhhHHHHHHHHHHh
Confidence 46888999999988887766555 33444 55677776666 6666666668888888877 334566667765
Q ss_pred hccCCCCCChHHHHHHHHHHHhhhcccchhhhcCChHHHHHHHHHHHHhhhcccchHH--------HHHHHHHHhhcccc
Q 008865 148 IGSVDEPSTDEFIREKVLSFIRDKVFPLKAELLKPQEEMERHITDLIKKSLEDVTGAE--------FRMFMDFLKSLSLF 219 (550)
Q Consensus 148 I~~~~e~~~eE~vREr~lkFl~~kl~~l~~e~l~~~eE~Ee~i~~~ikKvL~dVt~~E--------F~l~m~lL~sL~~~ 219 (550)
+.. ++=-...|-.+.+.+..=+..-..++. .-..++|...| +-+.+|- |.++.-++...++
T Consensus 89 ~~~---q~~~q~~R~~~~~ll~~l~~~~~~~l~---~~~~~fv~~~i----~~~~gEkDPRnLl~~F~l~~~i~~~~~~- 157 (262)
T PF14500_consen 89 VDV---QSLPQSTRYAVYQLLDSLLENHREALQ---SMGDDFVYGFI----QLIDGEKDPRNLLLSFKLLKVILQEFDI- 157 (262)
T ss_pred CCh---hhhhHHHHHHHHHHHHHHHHHhHHHHH---hchhHHHHHHH----HHhccCCCHHHHHHHHHHHHHHHHhccc-
Confidence 542 111223576666655543322222221 01122222222 2122221 3333333343332
Q ss_pred CCCCchhHHHHHHHHHHHhhcccccCCCCCh------hhHHHHHHHHHHhhhhhccCCCchhHHHHHHhhhcccCCCCCh
Q 008865 220 GEKAPTERMKELIGIIEGQADLDAQFNVSDA------DHIDRLISCLYMALPFFLRGASGSKFLNYLNKHIIPVFDKLPE 293 (550)
Q Consensus 220 ~~~~~~gr~qeLv~~i~eqa~Ld~~f~~sD~------d~idRli~cl~~Alp~fs~~v~st~f~~y~~~~IlP~l~~L~~ 293 (550)
. .-..+|-+.+.-===++=.-++.|| |-...+..|+. |-|.| -.|..-.++-+|+.=..
T Consensus 158 ~-----~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~-s~~~f---------a~~~~p~LleKL~s~~~ 222 (262)
T PF14500_consen 158 S-----EFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLS-STPLF---------APFAFPLLLEKLDSTSP 222 (262)
T ss_pred c-----hhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhc-CcHhh---------HHHHHHHHHHHHcCCCc
Confidence 1 1123444444321001101123455 33356667762 23333 33444444444444444
Q ss_pred hhhhhHHHHHHHhCCCCCchhhhhhhHHHHHHHHhh
Q 008865 294 ERKLDLLKALAEISPYTTPQDSRQILPSVAVLLKKY 329 (550)
Q Consensus 294 ~~kl~lLK~lAE~s~~~~~~~a~~~l~~i~~~L~~~ 329 (550)
..|++.|+.|....+-=++......+..|++.|+..
T Consensus 223 ~~K~D~L~tL~~c~~~y~~~~~~~~~~~iw~~lk~E 258 (262)
T PF14500_consen 223 SVKLDSLQTLKACIENYGADSLSPHWSTIWNALKFE 258 (262)
T ss_pred HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
Confidence 689999999999876446666777888888888754
No 24
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=94.54 E-value=1.3 Score=57.01 Aligned_cols=116 Identities=16% Similarity=0.163 Sum_probs=84.1
Q ss_pred HHHHHHHhc-CCHHHHHHHhhhhhHHhccCCCcc-----hHHHHHhhhhhcccchhHHHHHhhccccccccCcchhhhH-
Q 008865 34 YEGIIEAAK-TSLKAKQLAAQLIPRFFKFFPDLS-----SRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKI- 106 (550)
Q Consensus 34 y~~Il~~~K-gs~k~K~LAaQfI~kffk~FP~L~-----e~Ai~a~lDLcEDed~~IR~qaik~Lp~lck~~~e~~~ri- 106 (550)
...++...+ ++...++.|+..|....+.=++.. .-||..+..|....+..||.+|+-.|..+|.+.++.-..|
T Consensus 448 Ip~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~iV~ 527 (2102)
T PLN03200 448 VQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRACVE 527 (2102)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHHHHH
Confidence 444555455 778889999988888877555544 3678899999999999999999999999999764433324
Q ss_pred ----HHHHHHHHhhchhHHHHHHHHHHHHHHhhchHHHHHHHHHhhc
Q 008865 107 ----VDILVQLLAAEEIVERDAVHKALMSLLRQDVKASLTALFKHIG 149 (550)
Q Consensus 107 ----aDVL~QLLqsdd~~E~~~v~~aL~sllk~D~k~tLt~lf~qI~ 149 (550)
..-|+++|.+.++.-...+-++|.+|.+..-..++.-++.-+.
T Consensus 528 ~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~~~I~~Lv~LLl 574 (2102)
T PLN03200 528 SAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADAATISQLTALLL 574 (2102)
T ss_pred HCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccchhHHHHHHHHhc
Confidence 3367899999887666677777777766554555555554443
No 25
>KOG3973 consensus Uncharacterized conserved glycine-rich protein [Function unknown]
Probab=94.53 E-value=0.52 Score=50.30 Aligned_cols=18 Identities=11% Similarity=0.298 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 008865 389 KDFTERLTTVEDLTRATM 406 (550)
Q Consensus 389 kdFr~RLqyl~~~~q~yi 406 (550)
.||-.|++.|.....+++
T Consensus 212 ~ey~~Rr~ll~sRL~vTV 229 (465)
T KOG3973|consen 212 REYYNRRLLLNSRLKVTV 229 (465)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 466666666665555543
No 26
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=94.46 E-value=0.045 Score=64.14 Aligned_cols=25 Identities=20% Similarity=0.226 Sum_probs=13.8
Q ss_pred ccCCCcchHHHHHhhhhhcccchhH
Q 008865 60 KFFPDLSSRAVDAHLDLIEEEELGV 84 (550)
Q Consensus 60 k~FP~L~e~Ai~a~lDLcEDed~~I 84 (550)
.+||..+-..+..|=.+.|.+-..|
T Consensus 676 ~ilp~Hsq~~~~eqrkvf~~~p~gv 700 (1282)
T KOG0921|consen 676 EILPLHSQLTSQEQRKVFEPVPEGV 700 (1282)
T ss_pred ccccchhhcccHhhhhccCcccccc
Confidence 4566666566666555555554443
No 27
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.42 E-value=3 Score=50.41 Aligned_cols=141 Identities=17% Similarity=0.237 Sum_probs=94.0
Q ss_pred cChhhHHHHHHHhc-CCHHHHHHHhhhhhHHhccCCCcchHHHH---Hhhhh-hcccchhHHHHHhhccccccccC---c
Q 008865 29 QNVKDYEGIIEAAK-TSLKAKQLAAQLIPRFFKFFPDLSSRAVD---AHLDL-IEEEELGVRVQAIRGLPLFCKDT---P 100 (550)
Q Consensus 29 ~~~~~y~~Il~~~K-gs~k~K~LAaQfI~kffk~FP~L~e~Ai~---a~lDL-cEDed~~IR~qaik~Lp~lck~~---~ 100 (550)
+-.+-.+.++..++ ++++....|=-.+..+=..|++-.-.=|+ .+|-= .-|.+..||+.|+|++-.+...+ +
T Consensus 115 ~WPell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~~~~~~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~ 194 (1075)
T KOG2171|consen 115 KWPELLQFLFQSTKSPNPSLRESALLILSSLPETFGNTLQPHLDDLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNK 194 (1075)
T ss_pred chHHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhccccchhHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccch
Confidence 45566777778888 78888888877777777777766654333 33332 35666679999999999888766 3
Q ss_pred ch-------hhhHHHHHHHHHhhchhHHHHHHHHHHHHHHhhchHHHHHHHHHhhccC-----CCCCChHHHHHHHHHHH
Q 008865 101 EY-------LSKIVDILVQLLAAEEIVERDAVHKALMSLLRQDVKASLTALFKHIGSV-----DEPSTDEFIREKVLSFI 168 (550)
Q Consensus 101 e~-------~~riaDVL~QLLqsdd~~E~~~v~~aL~sllk~D~k~tLt~lf~qI~~~-----~e~~~eE~vREr~lkFl 168 (550)
.- +|++..||.-+++.+|..-..-+=++|.+|+-..|| .|+-.|++|... ..-+=|+.+|-.+|+||
T Consensus 195 ~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk-~l~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~i 273 (1075)
T KOG2171|consen 195 SEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPK-LLRPHLSQIIQFSLEIAKNKELENSIRHLALEFL 273 (1075)
T ss_pred HHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchH-HHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHH
Confidence 33 444555555556667766678888999999999988 445555554311 11122455777777776
Q ss_pred hh
Q 008865 169 RD 170 (550)
Q Consensus 169 ~~ 170 (550)
..
T Consensus 274 vs 275 (1075)
T KOG2171|consen 274 VS 275 (1075)
T ss_pred HH
Confidence 64
No 28
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=92.52 E-value=2.2 Score=51.03 Aligned_cols=78 Identities=18% Similarity=0.151 Sum_probs=38.1
Q ss_pred CCHHHHHHHhhhhhHHhccCCCcchHHHHHhhhhhcccchhHHHHHhhccccccccCcchhhhHHHHHHHHHhhchhHHH
Q 008865 43 TSLKAKQLAAQLIPRFFKFFPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQLLAAEEIVER 122 (550)
Q Consensus 43 gs~k~K~LAaQfI~kffk~FP~L~e~Ai~a~lDLcEDed~~IR~qaik~Lp~lck~~~e~~~riaDVL~QLLqsdd~~E~ 122 (550)
.++.+.+.|++.+.++. .++++..+.-+.+|+|..||..|+..|-.+...-+ -.++|.++|+++++..+
T Consensus 633 ~d~~VR~~Av~~L~~~~------~~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~-----~~~~L~~~L~~~d~~VR 701 (897)
T PRK13800 633 PDPGVRRTAVAVLTETT------PPGFGPALVAALGDGAAAVRRAAAEGLRELVEVLP-----PAPALRDHLGSPDPVVR 701 (897)
T ss_pred CCHHHHHHHHHHHhhhc------chhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccC-----chHHHHHHhcCCCHHHH
Confidence 55555555555555543 13345555555555555555555555544422111 12455555555555444
Q ss_pred HHHHHHHHH
Q 008865 123 DAVHKALMS 131 (550)
Q Consensus 123 ~~v~~aL~s 131 (550)
..+=.+|..
T Consensus 702 ~~A~~aL~~ 710 (897)
T PRK13800 702 AAALDVLRA 710 (897)
T ss_pred HHHHHHHHh
Confidence 444444433
No 29
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=91.98 E-value=0.82 Score=44.64 Aligned_cols=162 Identities=15% Similarity=0.197 Sum_probs=94.1
Q ss_pred cChhhHHHHHHHhcCCHHHHHHHhhhhhHHhccCCCcchHHHHHhhhhhcccchhHHHHHhhccccccccCcchhhhHHH
Q 008865 29 QNVKDYEGIIEAAKTSLKAKQLAAQLIPRFFKFFPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVD 108 (550)
Q Consensus 29 ~~~~~y~~Il~~~Kgs~k~K~LAaQfI~kffk~FP~L~e~Ai~a~lDLcEDed~~IR~qaik~Lp~lck~~~e~~~riaD 108 (550)
.+.+....+-..++|+. ...+.+.|+..+. +.+..+.....|.-+.|-+.|+.-|-.++..-..++...+|
T Consensus 23 ~r~~al~~L~~l~~~~~-----~~~~~~~~~~~l~----~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~ 93 (228)
T PF12348_consen 23 ERVEALQKLRSLIKGNA-----PEDFPPDFVECLR----QLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYAD 93 (228)
T ss_dssp HHHHHHHHHHHHHHH-B----------HHHHHHHH-------HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHH
T ss_pred HHHHHHHHHHHHHHcCC-----ccccHHHHHHHHH----HhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHH
Confidence 45666666666666551 1334444544444 45567777788888899999988888887776666666666
Q ss_pred HHHHHH----hhchhHHHHHHHHHHHHHHhhch--HHHHHHHHHhhccCCCCCChHHHHHHHHHHHhhhcccch--hhhc
Q 008865 109 ILVQLL----AAEEIVERDAVHKALMSLLRQDV--KASLTALFKHIGSVDEPSTDEFIREKVLSFIRDKVFPLK--AELL 180 (550)
Q Consensus 109 VL~QLL----qsdd~~E~~~v~~aL~sllk~D~--k~tLt~lf~qI~~~~e~~~eE~vREr~lkFl~~kl~~l~--~e~l 180 (550)
.++..| .+....-++.+.++|.+++..-+ ..++..++.+... +-...+|..++.||..-+...+ ...+
T Consensus 94 ~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~~~~~l~~~~~----~Kn~~vR~~~~~~l~~~l~~~~~~~~~l 169 (228)
T PF12348_consen 94 ILLPPLLKKLGDSKKFIREAANNALDAIIESCSYSPKILLEILSQGLK----SKNPQVREECAEWLAIILEKWGSDSSVL 169 (228)
T ss_dssp HHHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H--HHHHHHHHHHTT-----S-HHHHHHHHHHHHHHHTT-----GGG
T ss_pred HHHHHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHh----CCCHHHHHHHHHHHHHHHHHccchHhhh
Confidence 655544 44556888999999999999977 4443566665543 4456799999999998777766 3343
Q ss_pred CChHHHHHHHHHHHHhhhcccchH
Q 008865 181 KPQEEMERHITDLIKKSLEDVTGA 204 (550)
Q Consensus 181 ~~~eE~Ee~i~~~ikKvL~dVt~~ 204 (550)
... ..-..++..|.+.|.|-.++
T Consensus 170 ~~~-~~~~~l~~~l~~~l~D~~~~ 192 (228)
T PF12348_consen 170 QKS-AFLKQLVKALVKLLSDADPE 192 (228)
T ss_dssp --H-HHHHHHHHHHHHHHTSS-HH
T ss_pred ccc-chHHHHHHHHHHHCCCCCHH
Confidence 221 12256777788888877653
No 30
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=91.96 E-value=25 Score=39.46 Aligned_cols=122 Identities=16% Similarity=0.228 Sum_probs=88.9
Q ss_pred CCHHHHHHHhhhhhHHhccCC--CcchHHHHHhhhhhcccchhHHHHHhhccccccccCcchh-----hhHHHHHHHHHh
Q 008865 43 TSLKAKQLAAQLIPRFFKFFP--DLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYL-----SKIVDILVQLLA 115 (550)
Q Consensus 43 gs~k~K~LAaQfI~kffk~FP--~L~e~Ai~a~lDLcEDed~~IR~qaik~Lp~lck~~~e~~-----~riaDVL~QLLq 115 (550)
.+...-.++...|.+.|+.++ ++..+....+.......++.||.-|++.|-.+..++...+ ..+...++++|.
T Consensus 50 ~~~e~v~~~~~iL~~~l~~~~~~~l~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~ 129 (503)
T PF10508_consen 50 SNREQVELICDILKRLLSALSPDSLLPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLR 129 (503)
T ss_pred cChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHc
Confidence 345555688899999998764 3456777788888889999999999999877776654421 236677889999
Q ss_pred hchhHHHHHHHHHHHHHHhhchHHHHHHH--------HHhhccCCCCCChHHHHHHHHHHHhh
Q 008865 116 AEEIVERDAVHKALMSLLRQDVKASLTAL--------FKHIGSVDEPSTDEFIREKVLSFIRD 170 (550)
Q Consensus 116 sdd~~E~~~v~~aL~sllk~D~k~tLt~l--------f~qI~~~~e~~~eE~vREr~lkFl~~ 170 (550)
.+|......+-++|..+.+..+.- ..+ +.++.. ..++.+|-|++..+..
T Consensus 130 ~~d~~Va~~A~~~L~~l~~~~~~~--~~l~~~~~~~~L~~l~~----~~~~~vR~Rv~el~v~ 186 (503)
T PF10508_consen 130 DPDLSVAKAAIKALKKLASHPEGL--EQLFDSNLLSKLKSLMS----QSSDIVRCRVYELLVE 186 (503)
T ss_pred CCcHHHHHHHHHHHHHHhCCchhH--HHHhCcchHHHHHHHHh----ccCHHHHHHHHHHHHH
Confidence 999999999999999998875432 223 333331 3367889999987664
No 31
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=91.81 E-value=0.6 Score=55.66 Aligned_cols=90 Identities=24% Similarity=0.293 Sum_probs=69.0
Q ss_pred chHHHHHhhhhhcccchhHHHHHhhccccccccCcchhhhHHHHHHHHHhhchhHHHHHHHHHHHHHHhh-chHHHHHHH
Q 008865 66 SSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQLLAAEEIVERDAVHKALMSLLRQ-DVKASLTAL 144 (550)
Q Consensus 66 ~e~Ai~a~lDLcEDed~~IR~qaik~Lp~lck~~~e~~~riaDVL~QLLqsdd~~E~~~v~~aL~sllk~-D~k~tLt~l 144 (550)
.+.+++.++..++|+|+.||..|++.|..+.. +.....|.++|.++++..+..+=.+|..+... .+.. .+
T Consensus 619 ~~~~~~~L~~~L~D~d~~VR~~Av~~L~~~~~------~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~~~---~L 689 (897)
T PRK13800 619 DAPSVAELAPYLADPDPGVRRTAVAVLTETTP------PGFGPALVAALGDGAAAVRRAAAEGLRELVEVLPPAP---AL 689 (897)
T ss_pred cchhHHHHHHHhcCCCHHHHHHHHHHHhhhcc------hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCchH---HH
Confidence 44577889999999999999999999999864 35788999999999999999988888877543 2222 33
Q ss_pred HHhhccCCCCCChHHHHHHHHHHHh
Q 008865 145 FKHIGSVDEPSTDEFIREKVLSFIR 169 (550)
Q Consensus 145 f~qI~~~~e~~~eE~vREr~lkFl~ 169 (550)
...+. ++++.||.-++..|.
T Consensus 690 ~~~L~-----~~d~~VR~~A~~aL~ 709 (897)
T PRK13800 690 RDHLG-----SPDPVVRAAALDVLR 709 (897)
T ss_pred HHHhc-----CCCHHHHHHHHHHHH
Confidence 33333 356688988887665
No 32
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=91.63 E-value=2.7 Score=54.28 Aligned_cols=130 Identities=16% Similarity=0.221 Sum_probs=97.3
Q ss_pred hHHHHHHHhc-CCHHHHHHHhhhhhHHhccCCCc-----chHHHHHhhhhhcccchhHHHHHhhccccccccCcch----
Q 008865 33 DYEGIIEAAK-TSLKAKQLAAQLIPRFFKFFPDL-----SSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEY---- 102 (550)
Q Consensus 33 ~y~~Il~~~K-gs~k~K~LAaQfI~kffk~FP~L-----~e~Ai~a~lDLcEDed~~IR~qaik~Lp~lck~~~e~---- 102 (550)
.-..|.+..+ |++..|+.|+..|..||..=|+. ...+|--++.|....+..||++|-..|-.+.....+.
T Consensus 610 gL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~~q~~~ 689 (2102)
T PLN03200 610 ALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSIKENRKVS 689 (2102)
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 4455666666 89999999999999999977775 3457788999999999999999999999888644322
Q ss_pred -hhh-HHHHHHHHHhhchhHHHHHHHHHHHHHHhhc-h------HHHHHHHHHhhccCCCCCChHHHHHHHHHH
Q 008865 103 -LSK-IVDILVQLLAAEEIVERDAVHKALMSLLRQD-V------KASLTALFKHIGSVDEPSTDEFIREKVLSF 167 (550)
Q Consensus 103 -~~r-iaDVL~QLLqsdd~~E~~~v~~aL~sllk~D-~------k~tLt~lf~qI~~~~e~~~eE~vREr~lkF 167 (550)
+.. ++-.|++||.+.+....+.+-.+|..+++.. . .+.+..|...+. +|.+..|+.+-.=
T Consensus 690 ~v~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~~~e~~~ei~~~~~I~~Lv~lLr-----~G~~~~k~~Aa~A 758 (2102)
T PLN03200 690 YAAEDAIKPLIKLAKSSSIEVAEQAVCALANLLSDPEVAAEALAEDIILPLTRVLR-----EGTLEGKRNAARA 758 (2102)
T ss_pred HHHcCCHHHHHHHHhCCChHHHHHHHHHHHHHHcCchHHHHHHhcCcHHHHHHHHH-----hCChHHHHHHHHH
Confidence 222 5678999999999988888888888888763 1 123445555555 5666666655543
No 33
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.48 E-value=4 Score=47.61 Aligned_cols=313 Identities=18% Similarity=0.204 Sum_probs=172.2
Q ss_pred hHHHHHHHhcCCHHHHHHHhhhhhHHhc-----------------cCCCcchHHHHHhhhhhcccchhHHHHHhhccccc
Q 008865 33 DYEGIIEAAKTSLKAKQLAAQLIPRFFK-----------------FFPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLF 95 (550)
Q Consensus 33 ~y~~Il~~~Kgs~k~K~LAaQfI~kffk-----------------~FP~L~e~Ai~a~lDLcEDed~~IR~qaik~Lp~l 95 (550)
-|.=++.-+++.+..-.+|--+|-+=|+ .++...+-+++.+.-.-.|+++-||+.|.=..-.+
T Consensus 69 vyLYl~nYa~~~P~~a~~avnt~~kD~~d~np~iR~lAlrtm~~l~v~~i~ey~~~Pl~~~l~d~~~yvRktaa~~vakl 148 (734)
T KOG1061|consen 69 VYLYLMNYAKGKPDLAILAVNTFLKDCEDPNPLIRALALRTMGCLRVDKITEYLCDPLLKCLKDDDPYVRKTAAVCVAKL 148 (734)
T ss_pred HHHHHHHhhccCchHHHhhhhhhhccCCCCCHHHHHHHhhceeeEeehHHHHHHHHHHHHhccCCChhHHHHHHHHHHHh
Confidence 4666677777777666666555544333 25667788899999999999999999998777777
Q ss_pred cccCcchhhh--HHHHHHHHHhhchhHHHHHHHHHHHHHHhhchHHHHHHHHHhhccC-CC--CCChHHHHHHHHHHHhh
Q 008865 96 CKDTPEYLSK--IVDILVQLLAAEEIVERDAVHKALMSLLRQDVKASLTALFKHIGSV-DE--PSTDEFIREKVLSFIRD 170 (550)
Q Consensus 96 ck~~~e~~~r--iaDVL~QLLqsdd~~E~~~v~~aL~sllk~D~k~tLt~lf~qI~~~-~e--~~~eE~vREr~lkFl~~ 170 (550)
-..+++++-. +.|.|.+|+-+++|..+..+-.||..+..++|-..+..+-.++... -+ ..-+|=-+--++.++..
T Consensus 149 ~~~~~~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~~~~l~~~~~~~lL~al~ec~EW~qi~IL~~l~~ 228 (734)
T KOG1061|consen 149 FDIDPDLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESHPSVNLLELNPQLINKLLEALNECTEWGQIFILDCLAE 228 (734)
T ss_pred hcCChhhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHHHHhhhhhHHHHHHHHHh
Confidence 7777777544 9999999999999999999999999999998742222222222100 00 01111123334444333
Q ss_pred hcccchhhhcCChHHHHHHHHHH---HHhhhcccchHHHHHHHHHHhhccccCCCCchhHHHHHHHHHHHhhcccccCCC
Q 008865 171 KVFPLKAELLKPQEEMERHITDL---IKKSLEDVTGAEFRMFMDFLKSLSLFGEKAPTERMKELIGIIEGQADLDAQFNV 247 (550)
Q Consensus 171 kl~~l~~e~l~~~eE~Ee~i~~~---ikKvL~dVt~~EF~l~m~lL~sL~~~~~~~~~gr~qeLv~~i~eqa~Ld~~f~~ 247 (550)
.+-+ +..|++..+..+ +..+=..|--..-..+|.++..++.+. ..+.+-+..+ |-...+.
T Consensus 229 y~p~-------d~~ea~~i~~r~~p~Lqh~n~avvlsavKv~l~~~~~~~~~~--------~~~~~K~~~p--l~tlls~ 291 (734)
T KOG1061|consen 229 YVPK-------DSREAEDICERLTPRLQHANSAVVLSAVKVILQLVKYLKQVN--------ELLFKKVAPP--LVTLLSS 291 (734)
T ss_pred cCCC-------CchhHHHHHHHhhhhhccCCcceEeehHHHHHHHHHHHHHHH--------HHHHHHhccc--ceeeecc
Confidence 2211 112333333222 222222222233345666666554431 3333333332 1111111
Q ss_pred -CChhhHH-HHHHHHHHhhhhhccCCCchhHHHHHHhhhccc---CCCCC----hhhhhhHHHHHHHhCCCCCchh---h
Q 008865 248 -SDADHID-RLISCLYMALPFFLRGASGSKFLNYLNKHIIPV---FDKLP----EERKLDLLKALAEISPYTTPQD---S 315 (550)
Q Consensus 248 -sD~d~id-Rli~cl~~Alp~fs~~v~st~f~~y~~~~IlP~---l~~L~----~~~kl~lLK~lAE~s~~~~~~~---a 315 (550)
+...++- |=|..+-+..|.+- ..+.-.|+|+.-=|. +.+|. ...+-.+-.+++|+..||+..| +
T Consensus 292 ~~e~qyvaLrNi~lil~~~p~~~----~~~~~~Ff~kynDPiYvK~eKleil~~la~~~nl~qvl~El~eYatevD~~fv 367 (734)
T KOG1061|consen 292 ESEIQYVALRNINLILQKRPEIL----KVEIKVFFCKYNDPIYVKLEKLEILIELANDANLAQVLAELKEYATEVDVDFV 367 (734)
T ss_pred cchhhHHHHhhHHHHHHhChHHH----HhHhHeeeeecCCchhhHHHHHHHHHHHhhHhHHHHHHHHHHHhhhhhCHHHH
Confidence 1112221 33334444555432 245556677655553 22221 1234455678899999998766 4
Q ss_pred hhhhHHHHHHHHhhCCCCCC--------CCCccchHHHHHHHHHHHHhhhcCchhhhhccC
Q 008865 316 RQILPSVAVLLKKYMPLRKT--------GGEEMNFTYVECLLYTFHHLAHKAPNATNSLCG 368 (550)
Q Consensus 316 ~~~l~~i~~~L~~~mP~~~~--------~~~~l~fS~vEcLL~afh~L~~k~p~~l~~~cg 368 (550)
++-+..|++.-.++=.. .. -+.+-++-.-||..+ +..+.||+|+-..+.|-
T Consensus 368 rkaIraig~~aik~e~~-~~cv~~lLell~~~~~yvvqE~~vv-i~dilRkyP~~~~~vv~ 426 (734)
T KOG1061|consen 368 RKAVRAIGRLAIKAEQS-NDCVSILLELLETKVDYVVQEAIVV-IRDILRKYPNKYESVVA 426 (734)
T ss_pred HHHHHHhhhhhhhhhhh-hhhHHHHHHHHhhcccceeeehhHH-HHhhhhcCCCchhhhhh
Confidence 55555555544443332 10 134455556677664 66789999997655543
No 34
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=91.42 E-value=39 Score=40.69 Aligned_cols=91 Identities=22% Similarity=0.194 Sum_probs=70.2
Q ss_pred HHhhhhhHHhccCCC---cchHHHHHhhh-hhcccchhHHHHHhhccccccccCc--chhhhHHHHHHHHHhhchhHHHH
Q 008865 50 LAAQLIPRFFKFFPD---LSSRAVDAHLD-LIEEEELGVRVQAIRGLPLFCKDTP--EYLSKIVDILVQLLAAEEIVERD 123 (550)
Q Consensus 50 LAaQfI~kffk~FP~---L~e~Ai~a~lD-LcEDed~~IR~qaik~Lp~lck~~~--e~~~riaDVL~QLLqsdd~~E~~ 123 (550)
=|-=||++|-+.||. +-..-+|+.+- |-.|+-+.||+.|++.+--+|+-.+ ...+.|-|+|.||...-....+.
T Consensus 469 Ra~~~i~~fs~~~~~~~~~~~~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~~~vl~~~~p~ild~L~qlas~~s~evl~ 548 (1005)
T KOG2274|consen 469 RAFLTISKFSSSTVINPQLLQHFLNATVNALTMDVPPPVKISAVRAFCGYCKVKVLLSLQPMILDGLLQLASKSSDEVLV 548 (1005)
T ss_pred HHHHHHHHHHhhhccchhHHHHHHHHHHHhhccCCCCchhHHHHHHHHhccCceeccccchHHHHHHHHHcccccHHHHH
Confidence 355678888888764 33444454443 4566777799999999999996432 23788999999999988888899
Q ss_pred HHHHHHHHHHhhchHHH
Q 008865 124 AVHKALMSLLRQDVKAS 140 (550)
Q Consensus 124 ~v~~aL~sllk~D~k~t 140 (550)
.+-.+|.+..+.||+-+
T Consensus 549 llmE~Ls~vv~~dpef~ 565 (1005)
T KOG2274|consen 549 LLMEALSSVVKLDPEFA 565 (1005)
T ss_pred HHHHHHHHHhccChhhh
Confidence 99999999999999854
No 35
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=91.13 E-value=0.27 Score=58.03 Aligned_cols=10 Identities=20% Similarity=0.345 Sum_probs=6.1
Q ss_pred HHHHHHHHHH
Q 008865 404 ATMKKLTQGL 413 (550)
Q Consensus 404 ~yikkl~~~l 413 (550)
+.|..|+-+|
T Consensus 1096 AcItgLr~Am 1105 (1282)
T KOG0921|consen 1096 ACITGLRPAM 1105 (1282)
T ss_pred HHHhhhHHHH
Confidence 4666666555
No 36
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.94 E-value=4.7 Score=47.01 Aligned_cols=236 Identities=21% Similarity=0.259 Sum_probs=145.3
Q ss_pred CCcchHHHHHhhhhhcccchhHHHHHhhccccccccCcchhhhHHHHHHHHHhhchhHHHHHHHHHHHHHHhhchHHHH-
Q 008865 63 PDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQLLAAEEIVERDAVHKALMSLLRQDVKASL- 141 (550)
Q Consensus 63 P~L~e~Ai~a~lDLcEDed~~IR~qaik~Lp~lck~~~e~~~riaDVL~QLLqsdd~~E~~~v~~aL~sllk~D~k~tL- 141 (550)
|+|+.+--+-++-|..---+=||+.||=-|..+|--.||-+.-.-+=|.-=|-+.||....++=+.+.+|-+-+|+.-|
T Consensus 139 pdLARDLa~Dv~tLL~sskpYvRKkAIl~lykvFLkYPeAlr~~FprL~EkLeDpDp~V~SAAV~VICELArKnPknyL~ 218 (877)
T KOG1059|consen 139 PDLARDLADDVFTLLNSSKPYVRKKAILLLYKVFLKYPEALRPCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNYLQ 218 (877)
T ss_pred chhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhhHhHhhhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCccccc
Confidence 8999999999999999999999999999999999999999988999999999999999999999999999999999854
Q ss_pred -HHHHHhhccCCCCCChHHHHHHHHHHHhhhcccchhhhcCChHHHHHHHHHHHHhhhcccchHHHHHHHHHHh-----h
Q 008865 142 -TALFKHIGSVDEPSTDEFIREKVLSFIRDKVFPLKAELLKPQEEMERHITDLIKKSLEDVTGAEFRMFMDFLK-----S 215 (550)
Q Consensus 142 -t~lf~qI~~~~e~~~eE~vREr~lkFl~~kl~~l~~e~l~~~eE~Ee~i~~~ikKvL~dVt~~EF~l~m~lL~-----s 215 (550)
.-+|-++.+ .+..-=+--|+||.. ..|-++++-+- +-.=+-|+++|... ++ --++.+..+ +
T Consensus 219 LAP~ffkllt---tSsNNWmLIKiiKLF-~aLtplEPRLg---KKLieplt~li~sT----~A--mSLlYECvNTVVa~s 285 (877)
T KOG1059|consen 219 LAPLFYKLLV---TSSNNWVLIKLLKLF-AALTPLEPRLG---KKLIEPITELMEST----VA--MSLLYECVNTVVAVS 285 (877)
T ss_pred ccHHHHHHHh---ccCCCeehHHHHHHH-hhccccCchhh---hhhhhHHHHHHHhh----HH--HHHHHHHHHHheeeh
Confidence 455655552 122223455666632 24445433322 11222233333221 00 001111111 1
Q ss_pred ccccCCCCchhHHHHHHHHHHHhhcccccCCCCChhhHHHHHHHHHHhhhhhccCCCchhHHHHHHhhhcccCCCCChhh
Q 008865 216 LSLFGEKAPTERMKELIGIIEGQADLDAQFNVSDADHIDRLISCLYMALPFFLRGASGSKFLNYLNKHIIPVFDKLPEER 295 (550)
Q Consensus 216 L~~~~~~~~~gr~qeLv~~i~eqa~Ld~~f~~sD~d~idRli~cl~~Alp~fs~~v~st~f~~y~~~~IlP~l~~L~~~~ 295 (550)
+.... +.+ ...+++.+.. |...+..+|+- =+.|.|+ |+..+.+ -..++|+-.-+-|+-.|++-++-.
T Consensus 286 ~s~g~----~d~-~asiqLCvqK--Lr~fiedsDqN--LKYlgLl--am~KI~k--tHp~~Vqa~kdlIlrcL~DkD~SI 352 (877)
T KOG1059|consen 286 MSSGM----SDH-SASIQLCVQK--LRIFIEDSDQN--LKYLGLL--AMSKILK--THPKAVQAHKDLILRCLDDKDESI 352 (877)
T ss_pred hccCC----CCc-HHHHHHHHHH--HhhhhhcCCcc--HHHHHHH--HHHHHhh--hCHHHHHHhHHHHHHHhccCCchh
Confidence 11111 011 3444554442 22333333331 1444444 3333321 124566666667777888888888
Q ss_pred hhhHHHHHHHhCCCCCchhhhhhhHHHHHHHHhhCC
Q 008865 296 KLDLLKALAEISPYTTPQDSRQILPSVAVLLKKYMP 331 (550)
Q Consensus 296 kl~lLK~lAE~s~~~~~~~a~~~l~~i~~~L~~~mP 331 (550)
|++-|-+|=.|.. .+.+-.|...|+.+|-
T Consensus 353 RlrALdLl~gmVs-------kkNl~eIVk~LM~~~~ 381 (877)
T KOG1059|consen 353 RLRALDLLYGMVS-------KKNLMEIVKTLMKHVE 381 (877)
T ss_pred HHHHHHHHHHHhh-------hhhHHHHHHHHHHHHH
Confidence 9999998887754 5556666667777664
No 37
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=90.50 E-value=6.2 Score=43.11 Aligned_cols=187 Identities=18% Similarity=0.276 Sum_probs=99.6
Q ss_pred chhh-hHHHHHHHHHhhchhHHHHHHHHHHHHHHhh--chHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhhhcccchh
Q 008865 101 EYLS-KIVDILVQLLAAEEIVERDAVHKALMSLLRQ--DVKASLTALFKHIGSVDEPSTDEFIREKVLSFIRDKVFPLKA 177 (550)
Q Consensus 101 e~~~-riaDVL~QLLqsdd~~E~~~v~~aL~sllk~--D~k~tLt~lf~qI~~~~e~~~eE~vREr~lkFl~~kl~~l~~ 177 (550)
.|+. +.+==|+.++.|+|+.|++.++.-|..++.. +-+..+..- +-...+.|+.+--..-
T Consensus 128 ~~i~~~fi~~Ll~l~~S~D~rER~~lk~~l~~iy~k~~~~r~~Ir~~---------------i~~~~~~fi~e~~~~~-- 190 (409)
T PF01603_consen 128 KYIDQKFIKKLLELFDSPDPRERDYLKTILHRIYGKFPNLRSFIRKS---------------INNIFYRFIYETERHN-- 190 (409)
T ss_dssp TTS-HHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHH-TTTHHHHHHH---------------HHHHHHHHHHTTS--S--
T ss_pred HHcCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhHHHHHHH---------------HHHHHHHHhcCccccc--
Confidence 4555 3666688899999999999999988888864 222222111 1223344544322111
Q ss_pred hhcCChHHHHHHHHHHHHhhhcccc---hHHHH-HHHHHHhhccccCCCCchhHHHHHHHHHHHhhcccccCCCCChhhH
Q 008865 178 ELLKPQEEMERHITDLIKKSLEDVT---GAEFR-MFMDFLKSLSLFGEKAPTERMKELIGIIEGQADLDAQFNVSDADHI 253 (550)
Q Consensus 178 e~l~~~eE~Ee~i~~~ikKvL~dVt---~~EF~-l~m~lL~sL~~~~~~~~~gr~qeLv~~i~eqa~Ld~~f~~sD~d~i 253 (550)
-+ .| +++.+..++...+ .+|.. .|+.+|--|...+ .- ..+-
T Consensus 191 -gI---~e----lLeil~sii~gf~~plk~eh~~fl~~vllPLh~~~--~~-------------------------~~y~ 235 (409)
T PF01603_consen 191 -GI---AE----LLEILGSIINGFAVPLKEEHKQFLRKVLLPLHKSP--HL-------------------------SSYH 235 (409)
T ss_dssp -TH---HH----HHHHHHHHHTT--SS--HHHHHHHHHTTGGGGGST--GG-------------------------GGTH
T ss_pred -CH---HH----HHHHHHHHHhccCCCCcHHHHHHHHHHHHHHhcCC--cH-------------------------HHHH
Confidence 00 01 1222222222211 23443 3345555444332 11 1122
Q ss_pred HHHHHHHHHhhhhhccCCCchhHHHHHHhhhcccCCCCChhhhhhHHHHHHHhCCCCCchhhhhhhHHHHHHHHhhCCCC
Q 008865 254 DRLISCLYMALPFFLRGASGSKFLNYLNKHIIPVFDKLPEERKLDLLKALAEISPYTTPQDSRQILPSVAVLLKKYMPLR 333 (550)
Q Consensus 254 dRli~cl~~Alp~fs~~v~st~f~~y~~~~IlP~l~~L~~~~kl~lLK~lAE~s~~~~~~~a~~~l~~i~~~L~~~mP~~ 333 (550)
..+..|+.+-+ ..... +...+.+.++-+|=......+.-+|..+.++...+.+.+-..+...+|..|...+-+
T Consensus 236 ~~L~~~~~~f~---~kdp~---l~~~~i~~llk~WP~t~s~Kev~FL~el~~il~~~~~~~f~~i~~~lf~~la~ci~S- 308 (409)
T PF01603_consen 236 QQLSYCVVQFL---EKDPS---LAEPVIKGLLKHWPKTNSQKEVLFLNELEEILEVLPPEEFQKIMVPLFKRLAKCISS- 308 (409)
T ss_dssp HHHHHHHHHHH---HH-GG---GHHHHHHHHHHHS-SS-HHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHTS-
T ss_pred HHHHHHHHHHH---HhCch---hHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCC-
Confidence 44445554422 22222 222233333334443445788999999999999999888889999999999999954
Q ss_pred CCCCCccchHHHHHHHHHH
Q 008865 334 KTGGEEMNFTYVECLLYTF 352 (550)
Q Consensus 334 ~~~~~~l~fS~vEcLL~af 352 (550)
.+|..+|-.|+.+
T Consensus 309 ------~h~qVAErAl~~w 321 (409)
T PF01603_consen 309 ------PHFQVAERALYFW 321 (409)
T ss_dssp ------SSHHHHHHHHGGG
T ss_pred ------CCHHHHHHHHHHH
Confidence 6777777777654
No 38
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=90.06 E-value=0.15 Score=35.36 Aligned_cols=28 Identities=21% Similarity=0.247 Sum_probs=23.7
Q ss_pred HHHhhhhhcccchhHHHHHhhccccccc
Q 008865 70 VDAHLDLIEEEELGVRVQAIRGLPLFCK 97 (550)
Q Consensus 70 i~a~lDLcEDed~~IR~qaik~Lp~lck 97 (550)
+..++.+++|+++.||.+|+..|..||+
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 4678899999999999999999988875
No 39
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.63 E-value=7.6 Score=44.29 Aligned_cols=143 Identities=19% Similarity=0.175 Sum_probs=96.3
Q ss_pred hhhHHHHHHHhcCCHHHHHHHhhhhhHHhccCCCcchHH--HHHhhhhh----cccchhHHHHHhhccc------ccccc
Q 008865 31 VKDYEGIIEAAKTSLKAKQLAAQLIPRFFKFFPDLSSRA--VDAHLDLI----EEEELGVRVQAIRGLP------LFCKD 98 (550)
Q Consensus 31 ~~~y~~Il~~~Kgs~k~K~LAaQfI~kffk~FP~L~e~A--i~a~lDLc----EDed~~IR~qaik~Lp------~lck~ 98 (550)
.+-|...-..+..+...=+=+|....|-+|+-+.-+..+ +...+-|. -+-++..|+.-++=|. .+---
T Consensus 124 n~iFdvL~klsaDsd~~V~~~aeLLdRLikdIVte~~~tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~~~m~ 203 (675)
T KOG0212|consen 124 NEIFDVLCKLSADSDQNVRGGAELLDRLIKDIVTESASTFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSVPDLEMI 203 (675)
T ss_pred HHHHHHHHHHhcCCccccccHHHHHHHHHHHhccccccccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCcHHHH
Confidence 344555555666666666667777788887766544422 22222221 2236667777665443 32222
Q ss_pred CcchhhhHHHHHHHHHhhchhHHHHHHHHHHHHHHhh---ch-----HHHHHHHHHhhccCCCCCChHHHHHHHHHHHhh
Q 008865 99 TPEYLSKIVDILVQLLAAEEIVERDAVHKALMSLLRQ---DV-----KASLTALFKHIGSVDEPSTDEFIREKVLSFIRD 170 (550)
Q Consensus 99 ~~e~~~riaDVL~QLLqsdd~~E~~~v~~aL~sllk~---D~-----k~tLt~lf~qI~~~~e~~~eE~vREr~lkFl~~ 170 (550)
.|++-+-|.|.++|.......+++...+|.++++- +| ..+++.+-.|.. +.++.++.++|++|.+
T Consensus 204 --~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~P~s~d~~~~i~vlv~~l~-----ss~~~iq~~al~Wi~e 276 (675)
T KOG0212|consen 204 --SYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSSPSSMDYDDMINVLVPHLQ-----SSEPEIQLKALTWIQE 276 (675)
T ss_pred --hcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCccccCcccchhhcccccc-----CCcHHHHHHHHHHHHH
Confidence 47899999999999988888888999988888764 33 446777777777 7788899999999999
Q ss_pred hcccchhhhc
Q 008865 171 KVFPLKAELL 180 (550)
Q Consensus 171 kl~~l~~e~l 180 (550)
=+..-+.+++
T Consensus 277 fV~i~g~~~l 286 (675)
T KOG0212|consen 277 FVKIPGRDLL 286 (675)
T ss_pred HhcCCCcchh
Confidence 7766555554
No 40
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.58 E-value=23 Score=41.32 Aligned_cols=169 Identities=18% Similarity=0.192 Sum_probs=97.9
Q ss_pred HhhhhhcccchhHHHHHhhccccccccCcchhhhHHHHHHHHHhhchhHHHHHHHHHHHHHHhh--chHHHHHHHHHhhc
Q 008865 72 AHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQLLAAEEIVERDAVHKALMSLLRQ--DVKASLTALFKHIG 149 (550)
Q Consensus 72 a~lDLcEDed~~IR~qaik~Lp~lck~~~e~~~riaDVL~QLLqsdd~~E~~~v~~aL~sllk~--D~k~tLt~lf~qI~ 149 (550)
|++-=.|||=-.||++|+-.+-.+....|.+-.+--|.|+-+++.|..+.+.-+-++|.-+-.. =-..-|..++.-+.
T Consensus 377 A~VhGlEDEf~EVR~AAV~Sl~~La~ssP~FA~~aldfLvDMfNDE~~~VRL~ai~aL~~Is~~l~i~eeql~~il~~L~ 456 (823)
T KOG2259|consen 377 ALVHGLEDEFYEVRRAAVASLCSLATSSPGFAVRALDFLVDMFNDEIEVVRLKAIFALTMISVHLAIREEQLRQILESLE 456 (823)
T ss_pred eeeeechHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHheecHHHHHHHHHHHH
Confidence 4444568888889999999999999999999999999999999999988888887777655443 01223444444443
Q ss_pred cCCCCCChHHHHHHHHHHHhh-hcccchhhhcCChHHHHHHHHHHHHhhhcccchHHHHHHHHHHhhccccCCCCchhHH
Q 008865 150 SVDEPSTDEFIREKVLSFIRD-KVFPLKAELLKPQEEMERHITDLIKKSLEDVTGAEFRMFMDFLKSLSLFGEKAPTERM 228 (550)
Q Consensus 150 ~~~e~~~eE~vREr~lkFl~~-kl~~l~~e~l~~~eE~Ee~i~~~ikKvL~dVt~~EF~l~m~lL~sL~~~~~~~~~gr~ 228 (550)
.....+|+-+...|+. ++- +.+.-+..+..+.|+|..-+.++= ++++++-.++.+++. -+
T Consensus 457 -----D~s~dvRe~l~elL~~~~~~---------d~~~i~m~v~~lL~~L~kyPqDrd----~i~~cm~~iGqnH~~-lv 517 (823)
T KOG2259|consen 457 -----DRSVDVREALRELLKNARVS---------DLECIDMCVAHLLKNLGKYPQDRD----EILRCMGRIGQNHRR-LV 517 (823)
T ss_pred -----hcCHHHHHHHHHHHHhcCCC---------cHHHHHHHHHHHHHHhhhCCCCcH----HHHHHHHHHhccChh-hH
Confidence 2334567766665553 332 223333334444444433222221 345555555555532 12
Q ss_pred HHHHHHHHHhhccccc--CCCCChhhHHHHHHH
Q 008865 229 KELIGIIEGQADLDAQ--FNVSDADHIDRLISC 259 (550)
Q Consensus 229 qeLv~~i~eqa~Ld~~--f~~sD~d~idRli~c 259 (550)
+..+.-+.+....=.. -...|+.++-.+|=-
T Consensus 518 ~s~m~rfl~kh~~f~t~e~s~ed~~y~akLilv 550 (823)
T KOG2259|consen 518 LSNMGRFLEKHTSFATIEPSLEDGFYIAKLILV 550 (823)
T ss_pred HHHHHHHHHhcccccccCccccChhhhhhhhhh
Confidence 2233334332111111 113567777777643
No 41
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=88.34 E-value=0.73 Score=35.32 Aligned_cols=49 Identities=29% Similarity=0.330 Sum_probs=36.9
Q ss_pred hHHHHHhhccccccccCcch----hhhHHHHHHHHHhhchhHHHHHHHHHHHH
Q 008865 83 GVRVQAIRGLPLFCKDTPEY----LSKIVDILVQLLAAEEIVERDAVHKALMS 131 (550)
Q Consensus 83 ~IR~qaik~Lp~lck~~~e~----~~riaDVL~QLLqsdd~~E~~~v~~aL~s 131 (550)
.||.+|+..|-.++...++. ++.+...|..+|+++++..+..+-.||-+
T Consensus 2 ~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~ 54 (55)
T PF13513_consen 2 RVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGN 54 (55)
T ss_dssp HHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhc
Confidence 58889999998887666554 56788888889988887777776666543
No 42
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=88.20 E-value=33 Score=40.67 Aligned_cols=96 Identities=25% Similarity=0.313 Sum_probs=61.2
Q ss_pred CCHHHHHHHhhhhhHHhccCCCcchHHHHHhhhhhcccchhHHHHHhhccccccccCcchhhhHHHHHHHHHhhchhHHH
Q 008865 43 TSLKAKQLAAQLIPRFFKFFPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQLLAAEEIVER 122 (550)
Q Consensus 43 gs~k~K~LAaQfI~kffk~FP~L~e~Ai~a~lDLcEDed~~IR~qaik~Lp~lck~~~e~~~riaDVL~QLLqsdd~~E~ 122 (550)
-+.+.|||.==-+-+|-|.-|+++=.|+|++.+=.+|.++-||-.|||.+..+=. ++.+.-+.|-+-|+|....+-++
T Consensus 67 rd~ElKrL~ylYl~~yak~~P~~~lLavNti~kDl~d~N~~iR~~AlR~ls~l~~--~el~~~~~~~ik~~l~d~~ayVR 144 (757)
T COG5096 67 RDVELKRLLYLYLERYAKLKPELALLAVNTIQKDLQDPNEEIRGFALRTLSLLRV--KELLGNIIDPIKKLLTDPHAYVR 144 (757)
T ss_pred cCHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHhcCh--HHHHHHHHHHHHHHccCCcHHHH
Confidence 4566677766666666666677777777777766677777777777776665543 25566666666666666666666
Q ss_pred HHHHHHHHHHHhhchHHH
Q 008865 123 DAVHKALMSLLRQDVKAS 140 (550)
Q Consensus 123 ~~v~~aL~sllk~D~k~t 140 (550)
..|--|+..+++.|+.-.
T Consensus 145 k~Aalav~kly~ld~~l~ 162 (757)
T COG5096 145 KTAALAVAKLYRLDKDLY 162 (757)
T ss_pred HHHHHHHHHHHhcCHhhh
Confidence 666666666665554433
No 43
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=88.09 E-value=3 Score=46.73 Aligned_cols=131 Identities=21% Similarity=0.282 Sum_probs=89.7
Q ss_pred ccchHHHHHHHHHhh--hhhhcc--ccc--------------------cChhhHHHHHHHhcCC---HHHHHHHhhhh--
Q 008865 5 SDEAKQIEKLYEFGE--RLNEAK--DKS--------------------QNVKDYEGIIEAAKTS---LKAKQLAAQLI-- 55 (550)
Q Consensus 5 ~~~~~~ie~LY~~~~--~L~~ak--d~~--------------------~~~~~y~~Il~~~Kgs---~k~K~LAaQfI-- 55 (550)
=||..-|++||..|- .+.... ... ....--+.+.++..|+ .+.|.++-|||
T Consensus 268 ~ed~~~V~~L~~Ly~G~~~~~~~~~~pa~~~lq~kIL~~L~kS~~Aa~~~~~~~~i~~~~l~~~~~~~klk~~~l~F~~~ 347 (501)
T PF13001_consen 268 LEDPDLVDRLFDLYLGKGIPPENGRPPASPRLQEKILSLLSKSVIAATSFPNILQIVFDGLYSDNTNSKLKSLALQFIRG 347 (501)
T ss_pred CCCHHHHHHHHHHHHhcCCchhcCCCCCCHHHHHHHHHHHHHhHHHHhCCccHHHHHhccccCCccccccchhcchhhhc
Confidence 477788999999997 211110 000 1122234444555544 79999999999
Q ss_pred -hHHhccCCCcchHH-----HHHhhhhhc--------ccchhHHHHHhhccccccccCcchhhhHHHHHHHH---Hhhch
Q 008865 56 -PRFFKFFPDLSSRA-----VDAHLDLIE--------EEELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQL---LAAEE 118 (550)
Q Consensus 56 -~kffk~FP~L~e~A-----i~a~lDLcE--------Ded~~IR~qaik~Lp~lck~~~e~~~riaDVL~QL---Lqsdd 118 (550)
..=+++++.-.=+. ++....+.+ -++...|-.||..|-.|++..|..+.+-.+++..| |..|+
T Consensus 348 ~~~~~~~~~~~~l~~l~~~i~~~g~p~~~~~~~~~~~~~~~~lR~~aYe~lG~L~~~~p~l~~~d~~li~~LF~sL~~~~ 427 (501)
T PF13001_consen 348 SSWIFKHISPQILKLLRPVILSQGWPLIQDSSSQSNSSEDIELRSLAYETLGLLAKRAPSLFSKDLSLIEFLFDSLEDES 427 (501)
T ss_pred chHHhhhcCHHHHHHHHHHHHhcCccccccccccCCCcccHHHHHHHHHHHHHHHccCcccccccHHHHHHHHHHhhCcc
Confidence 88888888744333 344445563 24567899999999999999999986655555544 44577
Q ss_pred hHHHHHHHHHHHHHHhh
Q 008865 119 IVERDAVHKALMSLLRQ 135 (550)
Q Consensus 119 ~~E~~~v~~aL~sllk~ 135 (550)
+.-+..+..||.++...
T Consensus 428 ~evr~sIqeALssl~~a 444 (501)
T PF13001_consen 428 PEVRVSIQEALSSLAPA 444 (501)
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 78888999999888766
No 44
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.33 E-value=24 Score=41.57 Aligned_cols=75 Identities=15% Similarity=0.279 Sum_probs=56.6
Q ss_pred hhhcccchhHHHHHhhccccccccCcchhhhHHHHHHHHHhhchhHHHHHHHHHHHHHHhh-chHHHHHHHHHhhc
Q 008865 75 DLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQLLAAEEIVERDAVHKALMSLLRQ-DVKASLTALFKHIG 149 (550)
Q Consensus 75 DLcEDed~~IR~qaik~Lp~lck~~~e~~~riaDVL~QLLqsdd~~E~~~v~~aL~sllk~-D~k~tLt~lf~qI~ 149 (550)
-||||.|++.+--|.=++..|.|.+|..++.-=||.+++|...|++-+.-+-.=|..++.- +-......|+.|..
T Consensus 306 ~fiedsDqNLKYlgLlam~KI~ktHp~~Vqa~kdlIlrcL~DkD~SIRlrALdLl~gmVskkNl~eIVk~LM~~~~ 381 (877)
T KOG1059|consen 306 IFIEDSDQNLKYLGLLAMSKILKTHPKAVQAHKDLILRCLDDKDESIRLRALDLLYGMVSKKNLMEIVKTLMKHVE 381 (877)
T ss_pred hhhhcCCccHHHHHHHHHHHHhhhCHHHHHHhHHHHHHHhccCCchhHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence 4689999999999999999999999999999999999999998886665444444444433 33344455677765
No 45
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=87.13 E-value=3.3 Score=39.49 Aligned_cols=115 Identities=24% Similarity=0.212 Sum_probs=95.6
Q ss_pred cChhhHHHHHHHhcCCHHHHHHHhhhhhHHhccCCCcchHHHHHhhhhhcccchhHHHHHhhccccccccCcchhhhHHH
Q 008865 29 QNVKDYEGIIEAAKTSLKAKQLAAQLIPRFFKFFPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVD 108 (550)
Q Consensus 29 ~~~~~y~~Il~~~Kgs~k~K~LAaQfI~kffk~FP~L~e~Ai~a~lDLcEDed~~IR~qaik~Lp~lck~~~e~~~riaD 108 (550)
.+.+.|...|..+..-.-+=.+|+.++..+....|.+ ..+.....+++.-+|..|+=.+-.+.+. ..++..+-+
T Consensus 71 ~~~~~~~~~i~~~~~W~~~D~~~~~~~~~~~~~~~~~-----~~~~~w~~s~~~~~rR~~~~~~~~~~~~-~~~~~~~l~ 144 (197)
T cd06561 71 EDLERFEPWIEYIDNWDLVDSLCANLLGKLLYAEPEL-----DLLEEWAKSENEWVRRAAIVLLLRLIKK-ETDFDLLLE 144 (197)
T ss_pred HHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhcCcch-----HHHHHHHhCCcHHHHHHHHHHHHHHHHh-cccHHHHHH
Confidence 5667778788755555667788899888888888877 7788899999999999998888777776 356888999
Q ss_pred HHHHHHhhchhHHHHHHHHHHHHHHhhchHHHHHHHHHhhc
Q 008865 109 ILVQLLAAEEIVERDAVHKALMSLLRQDVKASLTALFKHIG 149 (550)
Q Consensus 109 VL~QLLqsdd~~E~~~v~~aL~sllk~D~k~tLt~lf~qI~ 149 (550)
++..++.+++.-...+|-++|.++.+.+|..++.-+-.+..
T Consensus 145 ~~~~~~~d~~~~Vqkav~w~L~~~~~~~~~~v~~~l~~~~~ 185 (197)
T cd06561 145 IIERLLHDEEYFVQKAVGWALREYGKKDPERVIAFLEKNGL 185 (197)
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999988877665543
No 46
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.07 E-value=20 Score=41.80 Aligned_cols=49 Identities=14% Similarity=0.116 Sum_probs=42.2
Q ss_pred HHhhhhhHHhccCCCcchHHHHHhhhhhcccchhHHHHHhhcccccccc
Q 008865 50 LAAQLIPRFFKFFPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKD 98 (550)
Q Consensus 50 LAaQfI~kffk~FP~L~e~Ai~a~lDLcEDed~~IR~qaik~Lp~lck~ 98 (550)
..--++..+-+..|.=.+-|+.++.+||.|.|..||.+|+++|-.+.-.
T Consensus 180 ~~~~~lg~~~ss~~~d~~~~~~~l~~~~~~~D~~Vrt~A~eglL~L~eg 228 (823)
T KOG2259|consen 180 CFHLPLGVSPSSLTHDREHAARGLIYLEHDQDFRVRTHAVEGLLALSEG 228 (823)
T ss_pred HHhhhcccCCCcccccHHHHHHHHHHHhcCCCcchHHHHHHHHHhhccc
Confidence 3444667777888888999999999999999999999999999988863
No 47
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=86.34 E-value=1.3 Score=39.00 Aligned_cols=67 Identities=24% Similarity=0.247 Sum_probs=51.5
Q ss_pred hHHHHHhhhhhcccchhHHHHHhhccccccccCcch----hhhHHHHHHHHHhhchhHHHHHHHHHHHHHHh
Q 008865 67 SRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEY----LSKIVDILVQLLAAEEIVERDAVHKALMSLLR 134 (550)
Q Consensus 67 e~Ai~a~lDLcEDed~~IR~qaik~Lp~lck~~~e~----~~riaDVL~QLLqsdd~~E~~~v~~aL~sllk 134 (550)
++-|.-++....|+|..||-.|...|.+++|..++- ...|=|+|..++..-|+..+..+ ..|..++|
T Consensus 26 ~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d~~Vr~~a-~~Ld~llk 96 (97)
T PF12755_consen 26 DEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPDENVRSAA-ELLDRLLK 96 (97)
T ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHH-HHHHHHhc
Confidence 456888999999999999999999999999875543 46688888888887777666655 44444443
No 48
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=85.81 E-value=24 Score=41.79 Aligned_cols=102 Identities=22% Similarity=0.246 Sum_probs=78.1
Q ss_pred HHHHHHHhcCCHHHHHHHhhhhhHHhcc-----------------CCCcchHHHHHhhhhhcccchhHHHHHhhcccccc
Q 008865 34 YEGIIEAAKTSLKAKQLAAQLIPRFFKF-----------------FPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFC 96 (550)
Q Consensus 34 y~~Il~~~Kgs~k~K~LAaQfI~kffk~-----------------FP~L~e~Ai~a~lDLcEDed~~IR~qaik~Lp~lc 96 (550)
|.=++--+|+.+.+-.||.-.|-+=|.| =|++.+.+++++.++.+|...-||+.|+=++-.+-
T Consensus 76 ylYl~~yak~~P~~~lLavNti~kDl~d~N~~iR~~AlR~ls~l~~~el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly 155 (757)
T COG5096 76 YLYLERYAKLKPELALLAVNTIQKDLQDPNEEIRGFALRTLSLLRVKELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLY 155 (757)
T ss_pred HHHHHHHhccCHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHH
Confidence 3334445566666666776666554443 37889999999999999999999999999999999
Q ss_pred ccCcchhhhH--HHHHHHHHhhchhHHHHHHHHHHHHHHhhchH
Q 008865 97 KDTPEYLSKI--VDILVQLLAAEEIVERDAVHKALMSLLRQDVK 138 (550)
Q Consensus 97 k~~~e~~~ri--aDVL~QLLqsdd~~E~~~v~~aL~sllk~D~k 138 (550)
+-+++++.-. .|+|.-|+.+.||. ++.+||.++..+||.
T Consensus 156 ~ld~~l~~~~g~~~~l~~l~~D~dP~---Vi~nAl~sl~~i~~e 196 (757)
T COG5096 156 RLDKDLYHELGLIDILKELVADSDPI---VIANALASLAEIDPE 196 (757)
T ss_pred hcCHhhhhcccHHHHHHHHhhCCCch---HHHHHHHHHHHhchh
Confidence 8888888875 66666666666664 567888888888877
No 49
>KOG2945 consensus Predicted RNA-binding protein [General function prediction only]
Probab=84.54 E-value=0.56 Score=50.51 Aligned_cols=31 Identities=42% Similarity=0.700 Sum_probs=16.4
Q ss_pred hhhhhhhhcCCC--CCCC--CCCCCcccCCCCCCCCC
Q 008865 515 NQLVNRALEGIS--RGGR--GGIRGRGRGWGARGRGR 547 (550)
Q Consensus 515 ~~~~~~~~~g~~--~~~~--~g~rgrgr~~g~~gr~~ 547 (550)
.++|....|+++ +++. +|.||||| ||||+|.
T Consensus 307 ~~vf~k~~n~~~~~~~~~~~~~~RgrGr--GgRg~gg 341 (365)
T KOG2945|consen 307 INVFDKPANFNSDRLEGNGGGGPRGRGR--GGRGEGG 341 (365)
T ss_pred hheeeccccccccccccCCCCCCccCCC--CCCCCCC
Confidence 556677777774 2222 34444444 6666554
No 50
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=84.16 E-value=28 Score=41.01 Aligned_cols=135 Identities=16% Similarity=0.273 Sum_probs=71.6
Q ss_pred HHHHHHHhhccccCCCCchhHHHHHHHHHHHhhcccccCCCCChhhHHHHHHHHHHh--hhhh----ccCCCchhHHHHH
Q 008865 207 RMFMDFLKSLSLFGEKAPTERMKELIGIIEGQADLDAQFNVSDADHIDRLISCLYMA--LPFF----LRGASGSKFLNYL 280 (550)
Q Consensus 207 ~l~m~lL~sL~~~~~~~~~gr~qeLv~~i~eqa~Ld~~f~~sD~d~idRli~cl~~A--lp~f----s~~v~st~f~~y~ 280 (550)
.++|.+++.+....... + .-+++++..-+++=. ..| .-|-.++|+-.. ++.. ..-.....|+.|+
T Consensus 468 ~lLlKlIRNiS~h~~~~---k-~~f~~~i~~L~~~v~---~~~--~ee~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L 538 (708)
T PF05804_consen 468 PLLLKLIRNISQHDGPL---K-ELFVDFIGDLAKIVS---SGD--SEEFVVECLGILANLTIPDLDWAQLLQEYNLLPWL 538 (708)
T ss_pred HHHHHHHHHHHhcCchH---H-HHHHHHHHHHHHHhh---cCC--cHHHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHH
Confidence 45677777777776533 1 224455554333211 111 124555555433 2211 1111234566666
Q ss_pred HhhhcccCCCCChhhhhhHHHHHHHhCCC--CCchh-hhhhhHHHHHHHHhhCCCCCCCCCccchHHHHHHHHHHHHhhh
Q 008865 281 NKHIIPVFDKLPEERKLDLLKALAEISPY--TTPQD-SRQILPSVAVLLKKYMPLRKTGGEEMNFTYVECLLYTFHHLAH 357 (550)
Q Consensus 281 ~~~IlP~l~~L~~~~kl~lLK~lAE~s~~--~~~~~-a~~~l~~i~~~L~~~mP~~~~~~~~l~fS~vEcLL~afh~L~~ 357 (550)
.+.+.|... .+|..|++.-.+.-+|.. |...- ...+++.++++|..+.- +=-+|==++|+|++|.+
T Consensus 539 ~~~L~~g~~--~dDl~LE~Vi~~gtla~d~~~A~lL~~sgli~~Li~LL~~kqe---------DdE~VlQil~~f~~ll~ 607 (708)
T PF05804_consen 539 KDLLKPGAS--EDDLLLEVVILLGTLASDPECAPLLAKSGLIPTLIELLNAKQE---------DDEIVLQILYVFYQLLF 607 (708)
T ss_pred HHHhCCCCC--ChHHHHHHHHHHHHHHCCHHHHHHHHhCChHHHHHHHHHhhCc---------hHHHHHHHHHHHHHHHc
Confidence 666666433 347788888888877642 21111 23346777777776652 22334457899999988
Q ss_pred cCch
Q 008865 358 KAPN 361 (550)
Q Consensus 358 k~p~ 361 (550)
+.+.
T Consensus 608 h~~t 611 (708)
T PF05804_consen 608 HEET 611 (708)
T ss_pred ChHH
Confidence 7443
No 51
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=84.08 E-value=3.2 Score=40.01 Aligned_cols=80 Identities=24% Similarity=0.243 Sum_probs=67.2
Q ss_pred hHHHHHhhhhhcccchhHHHHHhhccccccccCcchhhhHHHHHHHHHhhchhHHHHHHHHHHHHHHhhchHHHHHHHHH
Q 008865 67 SRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQLLAAEEIVERDAVHKALMSLLRQDVKASLTALFK 146 (550)
Q Consensus 67 e~Ai~a~lDLcEDed~~IR~qaik~Lp~lck~~~e~~~riaDVL~QLLqsdd~~E~~~v~~aL~sllk~D~k~tLt~lf~ 146 (550)
+.+..-+...++++++-+|..|+-.+-.+.+. ++...+-+++..++.+++.-...+|-.+|.++.+.||.-++.-|=.
T Consensus 119 ~~~~~~~~~W~~s~~~w~rR~~~v~~~~~~~~--~~~~~~l~~~~~~~~d~~~~vq~ai~w~L~~~~~~~~~~v~~~l~~ 196 (213)
T PF08713_consen 119 PEALELLEKWAKSDNEWVRRAAIVMLLRYIRK--EDFDELLEIIEALLKDEEYYVQKAIGWALREIGKKDPDEVLEFLQK 196 (213)
T ss_dssp GGHHHHHHHHHHCSSHHHHHHHHHCTTTHGGG--CHHHHHHHHHHHCTTGS-HHHHHHHHHHHHHHCTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHh--cCHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhCHHHHHHHHHH
Confidence 45677788899999999999999998888887 7788999999999999999999999999999999999887776665
Q ss_pred hh
Q 008865 147 HI 148 (550)
Q Consensus 147 qI 148 (550)
+.
T Consensus 197 ~~ 198 (213)
T PF08713_consen 197 NS 198 (213)
T ss_dssp S-
T ss_pred Cc
Confidence 44
No 52
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.56 E-value=52 Score=39.17 Aligned_cols=70 Identities=13% Similarity=0.193 Sum_probs=56.5
Q ss_pred cchhHHHHHhhccccccccCcchhhhHHHHHHHHHhh-chh--HHHHHHHHHHHHHHhhchHHHHHHHHHhhc
Q 008865 80 EELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQLLAA-EEI--VERDAVHKALMSLLRQDVKASLTALFKHIG 149 (550)
Q Consensus 80 ed~~IR~qaik~Lp~lck~~~e~~~riaDVL~QLLqs-dd~--~E~~~v~~aL~sllk~D~k~tLt~lf~qI~ 149 (550)
.|+=+.++.+|=|-.+.++++++-....|||+|+.-- |.. +=-.+...+..+++.++|.+-|..+=-.|.
T Consensus 246 ~dPFLQi~iLrlLriLGq~d~daSd~M~DiLaqvatntdsskN~GnAILYE~V~TI~~I~~~~~LrvlainiL 318 (866)
T KOG1062|consen 246 SDPFLQIRILRLLRILGQNDADASDLMNDILAQVATNTDSSKNAGNAILYECVRTIMDIRSNSGLRVLAINIL 318 (866)
T ss_pred CchHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHhccCCchHHHHHHHHH
Confidence 3455899999999999999999888899999999864 322 445667788889999999988888766665
No 53
>smart00543 MIF4G Middle domain of eukaryotic initiation factor 4G (eIF4G). Also occurs in NMD2p and CBP80. The domain is rich in alpha-helices and may contain multiple alpha-helical repeats. In eIF4G, this domain binds eIF4A, eIF3, RNA and DNA. Ponting (TiBS) "Novel eIF4G domain homologues (in press)
Probab=82.41 E-value=36 Score=31.95 Aligned_cols=138 Identities=22% Similarity=0.237 Sum_probs=73.3
Q ss_pred HHHHHHHHHhhcccccCCCCChhhHHHHHHHHHHhhhhhccCCCchhHHHHHHhhhcccCCCCC---hhhhhhHHHHHHH
Q 008865 229 KELIGIIEGQADLDAQFNVSDADHIDRLISCLYMALPFFLRGASGSKFLNYLNKHIIPVFDKLP---EERKLDLLKALAE 305 (550)
Q Consensus 229 qeLv~~i~eqa~Ld~~f~~sD~d~idRli~cl~~Alp~fs~~v~st~f~~y~~~~IlP~l~~L~---~~~kl~lLK~lAE 305 (550)
..++..+.+.+--.. .....+-+++.-+....|- -...+++++.+.+-..++... -.+...+++.++|
T Consensus 35 ~~l~~~i~~~~~~~~----~~~~~ya~L~~~l~~~~~~-----f~~~ll~~~~~~f~~~~e~~~~~~~~~~~~~i~fl~e 105 (200)
T smart00543 35 KYILELIFEKAVEEP----NFIPAYARLCALLNAKNPD-----FGSLLLERLQEEFEKGLESEEESDKQRRLGLVRFLGE 105 (200)
T ss_pred HHHHHHHHHHHHcCc----chHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHhhhhHHhHHHHHHH
Confidence 667777776644221 2233445555555444332 224455555544433222211 1356688999999
Q ss_pred hCCCCCchhhhhhhHHHHHHHHhhCCCCCCCCCccchHHHHHHHHHHHHhhhcCchhhhhccCcccccCCCCCccCcChh
Q 008865 306 ISPYTTPQDSRQILPSVAVLLKKYMPLRKTGGEEMNFTYVECLLYTFHHLAHKAPNATNSLCGYKIVTGQPSDRLGEDFS 385 (550)
Q Consensus 306 ~s~~~~~~~a~~~l~~i~~~L~~~mP~~~~~~~~l~fS~vEcLL~afh~L~~k~p~~l~~~cg~k~~Tgqpsd~lgeD~~ 385 (550)
+..+ +..... .+++.+...+.......+.-+...|||++..+.. ||+.+..+ ++ +
T Consensus 106 L~~~-~~i~~~----~i~~~l~~ll~~~~~~~~~~~~~~ve~l~~lL~~------------~G~~l~~~-------~~-~ 160 (200)
T smart00543 106 LYNF-QVLTSK----IILELLKELLNDLTKLDPPRSDFSVECLLSLLPT------------CGKDLERE-------KS-P 160 (200)
T ss_pred HHHc-ccCcHH----HHHHHHHHHHhccCCCCCCCcHHHHHHHHHHHHH------------hhHHHcCc-------cc-H
Confidence 9664 222222 2444444444432222233567899999999988 44444420 12 5
Q ss_pred hhHHHHHHHHHHHHH
Q 008865 386 DCYKDFTERLTTVED 400 (550)
Q Consensus 386 ~~~kdFr~RLqyl~~ 400 (550)
+.+++|..+++....
T Consensus 161 ~~~~~~l~~l~~~~~ 175 (200)
T smart00543 161 KLLDEILERLQDYLL 175 (200)
T ss_pred HHHHHHHHHHHHHHh
Confidence 667888777776543
No 54
>KOG3428 consensus Small nuclear ribonucleoprotein SMD1 and related snRNPs [RNA processing and modification]
Probab=81.79 E-value=0.8 Score=41.37 Aligned_cols=16 Identities=75% Similarity=1.238 Sum_probs=6.9
Q ss_pred CCCCcccCCCCCCCCCC
Q 008865 532 GIRGRGRGWGARGRGRG 548 (550)
Q Consensus 532 g~rgrgr~~g~~gr~~~ 548 (550)
.+|||||| +|||||+|
T Consensus 94 ~~rgrgrg-~Grg~~~g 109 (109)
T KOG3428|consen 94 VGRGRGRG-RGRGRGRG 109 (109)
T ss_pred cccccccc-cccCCCCC
Confidence 44444444 33334443
No 55
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=80.42 E-value=45 Score=37.59 Aligned_cols=94 Identities=19% Similarity=0.236 Sum_probs=54.9
Q ss_pred chhhhHHHHHHHHHhhchhHHHHHHHHHHHHHHhhchHHHHHHHHHhhccC--CC--CCChHHHHHHHHHHHhhhcccch
Q 008865 101 EYLSKIVDILVQLLAAEEIVERDAVHKALMSLLRQDVKASLTALFKHIGSV--DE--PSTDEFIREKVLSFIRDKVFPLK 176 (550)
Q Consensus 101 e~~~riaDVL~QLLqsdd~~E~~~v~~aL~sllk~D~k~tLt~lf~qI~~~--~e--~~~eE~vREr~lkFl~~kl~~l~ 176 (550)
++.+-|+|-|-++=.+|..+|..-+...|..++.-+.-++.+.-|.+|... +. .+.++..|+.++.-|..-+..=|
T Consensus 283 ~~~~~v~~~l~~~~g~e~a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~ 362 (516)
T KOG2956|consen 283 DQSALVADLLKEISGSERASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQP 362 (516)
T ss_pred chhHHHHHHHHhccCccchhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhch
Confidence 444556676666666667788877777777777666444444444442211 11 13566778888887776665555
Q ss_pred hhhcCChHHHHHHHHHHH
Q 008865 177 AELLKPQEEMERHITDLI 194 (550)
Q Consensus 177 ~e~l~~~eE~Ee~i~~~i 194 (550)
.-+..++|.+-.-+++.-
T Consensus 363 ~~l~DstE~ai~K~Leaa 380 (516)
T KOG2956|consen 363 ARLFDSTEIAICKVLEAA 380 (516)
T ss_pred HhhhchHHHHHHHHHHHH
Confidence 555555555444444433
No 56
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=80.29 E-value=19 Score=40.45 Aligned_cols=136 Identities=21% Similarity=0.158 Sum_probs=85.9
Q ss_pred chHHHHHHHHHhhh--------hhhccccccChhhHHHHHHHhcCCHHHHHHHhhhhhHHhccCCCcchHHHHHhhhhhc
Q 008865 7 EAKQIEKLYEFGER--------LNEAKDKSQNVKDYEGIIEAAKTSLKAKQLAAQLIPRFFKFFPDLSSRAVDAHLDLIE 78 (550)
Q Consensus 7 ~~~~ie~LY~~~~~--------L~~akd~~~~~~~y~~Il~~~Kgs~k~K~LAaQfI~kffk~FP~L~e~Ai~a~lDLcE 78 (550)
+.+.|+.+|+.... +=||--.+.+.++++.|.+..+...-.-.-|++++..-+..=|.-..+.++++++||+
T Consensus 324 ~~e~l~~l~~~~~~~~~~~r~~~~Dal~~~GT~~a~~~i~~~i~~~~~~~~ea~~~~~~~~~~~~~Pt~~~l~~l~~l~~ 403 (574)
T smart00638 324 SEEQLEQLWRQLYEKKKKARRIFLDAVAQAGTPPALKFIKQWIKNKKITPLEAAQLLAVLPHTARYPTEEILKALFELAE 403 (574)
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhhcCCHHHHHHHHHHhc
Confidence 44567777776532 3344444456677777777666544333457888887777667778999999999999
Q ss_pred ccc----hhHHHHHhhcccc----ccccCc--------chhhhHHHHHHHHHhhchhHHHHHHHHHHHHHHhhchHHHHH
Q 008865 79 EEE----LGVRVQAIRGLPL----FCKDTP--------EYLSKIVDILVQLLAAEEIVERDAVHKALMSLLRQDVKASLT 142 (550)
Q Consensus 79 Ded----~~IR~qaik~Lp~----lck~~~--------e~~~riaDVL~QLLqsdd~~E~~~v~~aL~sllk~D~k~tLt 142 (550)
++. ..+|..|+=++-. .|.+++ +|++.+.+-|.+..+..+..|..+.-+||=.+=....-.+|.
T Consensus 404 ~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~~~~i~~l~ 483 (574)
T smart00638 404 SPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNAGHPSSIKVLE 483 (574)
T ss_pred CccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhccCChhHHHHHH
Confidence 863 3467776665543 676664 344445555555555566677777777776555544443333
No 57
>KOG2256 consensus Predicted protein involved in nuclear export of pre-ribosomes [Translation, ribosomal structure and biogenesis]
Probab=80.20 E-value=73 Score=37.18 Aligned_cols=92 Identities=22% Similarity=0.305 Sum_probs=67.8
Q ss_pred hhHHhccCCCcchHHHHHhhhhhcccchhHHHHHhhccccccccCcchhhhHHHHHHHHHhh----------chhHHHHH
Q 008865 55 IPRFFKFFPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQLLAA----------EEIVERDA 124 (550)
Q Consensus 55 I~kffk~FP~L~e~Ai~a~lDLcEDed~~IR~qaik~Lp~lck~~~e~~~riaDVL~QLLqs----------dd~~E~~~ 124 (550)
..=||-.||.+...-|.++.-+---.|..+|+.|.==|-.+|+... -.=+-+||-++..+ +.-.=.+-
T Consensus 269 l~~~~~~f~k~lk~liK~~V~vWstge~~~rv~Afl~l~~l~~~~~--~~~l~~vlk~mY~afv~nsk~~~~~tl~~i~F 346 (661)
T KOG2256|consen 269 LVPFLATFPKLLKKLIKAVVHVWSTGEESLRVLAFLCLIDLCRKFK--STCLDPVLKTMYLAFVRNSKFVTVNTLPLINF 346 (661)
T ss_pred HHHHHhhHHHHHHHHHHHHheeeccCCcchhhHHHHHHHHHHHHhh--hHHHHHHHHHHHHHHHHhCCCCCCcccchhHH
Confidence 3458888999999999999988888888999999998888998642 23355666555543 22234556
Q ss_pred HHHHHHHHHhhchHHHHHHHHHhh
Q 008865 125 VHKALMSLLRQDVKASLTALFKHI 148 (550)
Q Consensus 125 v~~aL~sllk~D~k~tLt~lf~qI 148 (550)
.+++|++|+.+|+...-.--|--|
T Consensus 347 l~~slvEL~~ld~~~~Yq~aF~yI 370 (661)
T KOG2256|consen 347 LQNSLVELLGLDLQVSYQHAFVYI 370 (661)
T ss_pred HHHHHHHHhccCHHHHHHHHHHHH
Confidence 788888888888876665555544
No 58
>PF05823 Gp-FAR-1: Nematode fatty acid retinoid binding protein (Gp-FAR-1); InterPro: IPR008632 Parasitic nematodes produce at least two structurally novel classes of small helix-rich retinol- and fatty-acid-binding proteins that have no counterparts in their plant or animal hosts and thus represent potential targets for new nematicides. Gp-FAR-1 is a member of the nematode-specific fatty-acid- and retinol-binding (FAR) family of proteins but localises to the surface of the organism, placing it in a strategic position for interaction with the host. Gp-FAR-1 functions as a broad-spectrum retinol- and fatty-acid-binding protein, and it is thought that it is involved in the evasion of primary host plant defence systems [].; GO: 0008289 lipid binding; PDB: 2W9Y_A.
Probab=80.03 E-value=5 Score=38.28 Aligned_cols=132 Identities=17% Similarity=0.249 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHhhhcccchHHHHHHHHHHhhccccCCC----------Cch--hHHHHHHHHHHHhhcccccCCCCChhh
Q 008865 185 EMERHITDLIKKSLEDVTGAEFRMFMDFLKSLSLFGEK----------APT--ERMKELIGIIEGQADLDAQFNVSDADH 252 (550)
Q Consensus 185 E~Ee~i~~~ikKvL~dVt~~EF~l~m~lL~sL~~~~~~----------~~~--gr~qeLv~~i~eqa~Ld~~f~~sD~d~ 252 (550)
+..++|=.++...+.+.|++|=..+.++++.-..|.+. +|. +++..|.+. +...|+..+|++
T Consensus 5 ~~k~~iP~ev~~~~~~Lt~eeK~~lkev~~~~~~~~~~de~i~~LK~ksP~L~~k~~~l~~~------~k~ki~~L~pea 78 (154)
T PF05823_consen 5 EYKELIPSEVVEFYKNLTPEEKAELKEVAKNYAKFKNEDEMIAALKEKSPSLYEKAEKLRDK------LKKKIDKLSPEA 78 (154)
T ss_dssp HHHTT--HHHHHHHHH--TTTHHHHHHHHTT-------TTHHHHHHHH-HHHHHHHHHHHHH------HHHTTTT--HHH
T ss_pred HHHHhCcHHHHHHHHcCCHHHHHHHHHHHHHccccCCHHHHHHHHHHhCHHHHHHHHHHHHH------HHHHHHcCCHHH
Confidence 34444555666667777888877777777776666431 111 222223333 335577777876
Q ss_pred HHHHHHHHHHhhhhh---ccCCC-chhHHHHHHhhhcccCCCCChhhhhhHHHHHHHhCCCCCchhhhhhhHHH
Q 008865 253 IDRLISCLYMALPFF---LRGAS-GSKFLNYLNKHIIPVFDKLPEERKLDLLKALAEISPYTTPQDSRQILPSV 322 (550)
Q Consensus 253 idRli~cl~~Alp~f---s~~v~-st~f~~y~~~~IlP~l~~L~~~~kl~lLK~lAE~s~~~~~~~a~~~l~~i 322 (550)
-.-+-..+..++..+ +.|.. ....+..+...++-.+..||++.|-+|-+.|-+++.|.+....+.++..+
T Consensus 79 k~Fv~~li~~~~~l~~~~~~G~~~~~~~lk~~~k~~~~~ykaLs~~ak~dL~k~FP~i~~~~~~~k~~~~~~~~ 152 (154)
T PF05823_consen 79 KAFVKELIAKARSLYAQYSAGEKPDLEELKQLAKKVIDSYKALSPEAKDDLKKNFPIIASFLQNDKFQALIKKL 152 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT----THHHHHHH----HHHHTS-HHHHHHHHHH-TT-----------------
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHhhhHHHHHcCCHHHHHHHHHHCccchhhhhhhhhhhccccc
Confidence 654444444443333 23332 34456677788889999999999999999999999998777666555443
No 59
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=79.68 E-value=1.1e+02 Score=34.08 Aligned_cols=182 Identities=17% Similarity=0.141 Sum_probs=92.1
Q ss_pred hhhcccchhHHHHHhhccccccccCcchhh-----hHHHHHHHHHhhc----hhHHHHHHHHHHHHHHhhchHHHHHHHH
Q 008865 75 DLIEEEELGVRVQAIRGLPLFCKDTPEYLS-----KIVDILVQLLAAE----EIVERDAVHKALMSLLRQDVKASLTALF 145 (550)
Q Consensus 75 DLcEDed~~IR~qaik~Lp~lck~~~e~~~-----riaDVL~QLLqsd----d~~E~~~v~~aL~sllk~D~k~tLt~lf 145 (550)
+..++.|..|++.|+|-|-++.=.+|.--. ..++-|+..|... .+.|....--=|.=|+.-........++
T Consensus 39 ~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~ 118 (446)
T PF10165_consen 39 DEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLCERLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLI 118 (446)
T ss_pred ccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHH
Confidence 344777888999999988887766554311 2445566677665 2555555544455455544444444444
Q ss_pred HhhccCCCCCChHHHHHHHHHHHhhhcccchhhhc---CChHHHHHHHHHHHHhhhcccc-------hHHH----HHHHH
Q 008865 146 KHIGSVDEPSTDEFIREKVLSFIRDKVFPLKAELL---KPQEEMERHITDLIKKSLEDVT-------GAEF----RMFMD 211 (550)
Q Consensus 146 ~qI~~~~e~~~eE~vREr~lkFl~~kl~~l~~e~l---~~~eE~Ee~i~~~ikKvL~dVt-------~~EF----~l~m~ 211 (550)
.+.. .-+-++..|...+......-- .+ ..++..++.++.|+|=.|| .++| ..++.
T Consensus 119 ~e~~----------~~~~l~~~L~~~l~~~~~~~~~~~~~-~~~~~~~l~EiLKllFNit~~~~~~~~~~~~~~~~~l~~ 187 (446)
T PF10165_consen 119 EEHH----------GVELLTEALERHLKVKSKSSQEPTAP-SPMDEEALSEILKLLFNITLHYPKSVPEEFSPSIPHLVS 187 (446)
T ss_pred HHhh----------hHHHHHHHHHHHHhcccccccccCCC-CcchHHHHHHHHHHHHHhhhccCcccchhhhHHHHHHHH
Confidence 4321 233344444444433211111 11 2456666777777664331 1233 45566
Q ss_pred HHhhc--cccCCCCch-hHHHHHHHHHHHh-----hc-cccc-------CCCCChhhHHHHHHHHHHhhhhhc
Q 008865 212 FLKSL--SLFGEKAPT-ERMKELIGIIEGQ-----AD-LDAQ-------FNVSDADHIDRLISCLYMALPFFL 268 (550)
Q Consensus 212 lL~sL--~~~~~~~~~-gr~qeLv~~i~eq-----a~-Ld~~-------f~~sD~d~idRli~cl~~Alp~fs 268 (550)
++..+ +.-.+ .|- .=...+|..+..- .. +... ....+...|++++..+.+++..+.
T Consensus 188 il~~~l~~~~~~-~~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~~~~~v~~Ll~~Ld~~l~~~~ 259 (446)
T PF10165_consen 188 ILRRLLPPPPSS-PPLDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGDNMDVVERLLDFLDKRLDKYE 259 (446)
T ss_pred HHHHHhccCCCC-CcchhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCCChHHHHHHHHHHHHHHHhcC
Confidence 66655 22211 111 0012233333321 00 0111 123456788999999988887774
No 60
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=78.80 E-value=11 Score=38.85 Aligned_cols=130 Identities=17% Similarity=0.150 Sum_probs=81.0
Q ss_pred hhhHHHHHHHhc----CCHHHHHHHhhhhhHHhccCCCcchH-----HHHHhhhhhcccchhHHHHHhhccccccccCcc
Q 008865 31 VKDYEGIIEAAK----TSLKAKQLAAQLIPRFFKFFPDLSSR-----AVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPE 101 (550)
Q Consensus 31 ~~~y~~Il~~~K----gs~k~K~LAaQfI~kffk~FP~L~e~-----Ai~a~lDLcEDed~~IR~qaik~Lp~lck~~~e 101 (550)
..+++.++..-+ ...+++-+.+.-. ...||.-++- ++.-+.++..+.++.||.+|+..|-.++-+. |
T Consensus 11 ~~~l~~Ll~lL~~t~dp~i~e~al~al~n---~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~-e 86 (254)
T PF04826_consen 11 AQELQKLLCLLESTEDPFIQEKALIALGN---SAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVND-E 86 (254)
T ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHh---hccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCCh-h
Confidence 445555555444 3355555555544 3556655443 4567889999999999999999999887764 5
Q ss_pred hhhhHHHHHHHHHhh---c-hhHHHH-HHHHHHHHHHhhc-----hHHHHHHHHHhhccCCCCCChHHHHHHHHHHHh
Q 008865 102 YLSKIVDILVQLLAA---E-EIVERD-AVHKALMSLLRQD-----VKASLTALFKHIGSVDEPSTDEFIREKVLSFIR 169 (550)
Q Consensus 102 ~~~riaDVL~QLLqs---d-d~~E~~-~v~~aL~sllk~D-----~k~tLt~lf~qI~~~~e~~~eE~vREr~lkFl~ 169 (550)
...+|-..+.|++.. . -.++++ +.-+.|.++--.+ -...+..+|.-+. +|++.+|..+++.|.
T Consensus 87 n~~~Ik~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~~~i~~ll~LL~-----~G~~~~k~~vLk~L~ 159 (254)
T PF04826_consen 87 NQEQIKMYIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLANYIPDLLSLLS-----SGSEKTKVQVLKVLV 159 (254)
T ss_pred hHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHHhhHHHHHHHHH-----cCChHHHHHHHHHHH
Confidence 566666666666552 2 123333 3334444432112 2446777777666 778888998888765
No 61
>PF02854 MIF4G: MIF4G domain; InterPro: IPR003890 This entry represents an MIF4G-like domain. MIF4G domains share a common structure but can differ in sequence. This entry is designated "type 3", and is found in nuclear cap-binding proteins, eIF4G, and UPF2. The MIF4G domain is a structural motif with an ARM (Armadillo) repeat-type fold, consisting of a 2-layer alpha/alpha right-handed superhelix. Proteins usually contain two or more structurally similar MIF4G domains connected by unstructured linkers. MIF4G domains are found in several proteins involved in RNA metabolism, including eIF4G (eukaryotic initiation factor 4-gamma), eIF-2b (translation initiation factor), UPF2 (regulator of nonsense transcripts 2), and nuclear cap-binding proteins (CBP80, CBC1, NCBP1), although the sequence identity between them may be low []. The nuclear cap-binding complex (CBC) is a heterodimer. Human CBC consists of a large CBP80 subunit and a small CBP20 subunit, the latter being critical for cap binding. CBP80 contains three MIF4G domains connected with long linkers, while CBP20 has an RNP (ribonucleoprotein)-type domain that associates with domains 2 and 3 of CBP80 []. The complex binds to 5'-cap of eukaryotic RNA polymerase II transcripts, such as mRNA and U snRNA. The binding is important for several mRNA nuclear maturation steps and for nonsense-mediated decay. It is also essential for nuclear export of U snRNAs in metazoans []. Eukaryotic translation initiation factor 4 gamma (eIF4G) plays a critical role in protein expression, and is at the centre of a complex regulatory network. Together with the cap-binding protein eIF4E, it recruits the small ribosomal subunit to the 5'-end of mRNA and promotes the assembly of a functional translation initiation complex, which scans along the mRNA to the translation start codon. The activity of eIF4G in translation initiation could be regulated through intra- and inter-protein interactions involving the ARM repeats []. In eIF4G, the MIF4G domain binds eIF4A, eIF3, RNA and DNA. Nonsense-mediated mRNA decay (NMD) in eukaryotes involves UPF1, UPF2 and UPF3 to accelerate the decay rate of two unique classes of transcripts: (1) nonsense mRNAs that arise through errors in gene expression, and (2) naturally occurring transcripts that lack coding errors but have built-in features that target them for accelerated decay (error-free mRNAs). NMD can trigger decay during any round of translation and can target CBC-bound or eIF-4E-bound transcripts []. UPF2 contains MIF4G domains, while UPF3 contains an RNP domain []. ; GO: 0005515 protein binding, 0016070 RNA metabolic process; PDB: 3FEY_A 3FEX_A 1H6K_C 1H2V_C 1H2U_A 1H2T_C 1N54_A 1N52_A 1HU3_A 3RK6_A ....
Probab=77.88 E-value=18 Score=33.84 Aligned_cols=170 Identities=21% Similarity=0.279 Sum_probs=92.7
Q ss_pred HHhhhcccchHHHHHHHHHHhhccccCCCCchhHHHHHHHHHHHhhcccccCCCCChhhHHHHHHHHHHhhhhhccCCCc
Q 008865 194 IKKSLEDVTGAEFRMFMDFLKSLSLFGEKAPTERMKELIGIIEGQADLDAQFNVSDADHIDRLISCLYMALPFFLRGASG 273 (550)
Q Consensus 194 ikKvL~dVt~~EF~l~m~lL~sL~~~~~~~~~gr~qeLv~~i~eqa~Ld~~f~~sD~d~idRli~cl~~Alp~fs~~v~s 273 (550)
++..|..+|...|..+++-+..+..-. .+. ....+++.|.+.+-... .....+-+++.-+....|
T Consensus 4 v~~~lnklt~~n~~~~~~~l~~~~~~~--~~~-~~~~i~~~i~~~a~~~~----~~~~~~a~l~~~l~~~~~-------- 68 (209)
T PF02854_consen 4 VRGILNKLTPSNFESIIDELIKLNWSD--DPE-TLKEIVKLIFEKAVEEP----NFSPLYARLCAALNSRFP-------- 68 (209)
T ss_dssp HHHHHHHCSSTTHHHHHHHHHHHHHHS--CHH-HHHHHHHHHHHHHHHSG----GGHHHHHHHHHHHHHHCH--------
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHhhc--cHH-HHHHHHHHHhhhhhcCc----hHHHHHHHHHHHHhccch--------
Confidence 344555666666665554444443322 222 23678888877655443 223345566655555555
Q ss_pred hhHHHHHHhhhcccCCC------C------ChhhhhhHHHHHHHhCCCCCchhhhhhhHHHHHHHHhhCCCCCCCCCccc
Q 008865 274 SKFLNYLNKHIIPVFDK------L------PEERKLDLLKALAEISPYTTPQDSRQILPSVAVLLKKYMPLRKTGGEEMN 341 (550)
Q Consensus 274 t~f~~y~~~~IlP~l~~------L------~~~~kl~lLK~lAE~s~~~~~~~a~~~l~~i~~~L~~~mP~~~~~~~~l~ 341 (550)
+.|...+.+.+.-.|.. + ...+....++.+||+-.+ +......++..++.++....+... +.-+
T Consensus 69 ~~f~~~ll~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~fl~eL~~~-~vv~~~~i~~~l~~ll~~~~~~~~---~~~~ 144 (209)
T PF02854_consen 69 SEFRSLLLNRCQEEFEERYSNEELEENRQSSKQRRRGNIRFLAELFNF-GVVSEKIIFDILRELLSDGTDECQ---PPPD 144 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHHHHHHHHHHHHT-TSSCHHHHHHHHHHHHHHTSHHCC---HHTC
T ss_pred hhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhHHHhhHhh-ccccchhHHHHHHHHHhccccccc---CCCc
Confidence 34444444433333332 1 113577899999999553 323333344444433333332111 4567
Q ss_pred hHHHHHHHHHHHHhhhcCchhhhhccCcccccCCCCCccCcChhhhHHHHHHHHHHHHHH
Q 008865 342 FTYVECLLYTFHHLAHKAPNATNSLCGYKIVTGQPSDRLGEDFSDCYKDFTERLTTVEDL 401 (550)
Q Consensus 342 fS~vEcLL~afh~L~~k~p~~l~~~cg~k~~Tgqpsd~lgeD~~~~~kdFr~RLqyl~~~ 401 (550)
...|||++-.+...|++--.. + +.+..+++|..+++.....
T Consensus 145 ~~~ie~~~~lL~~~G~~l~~~------------------~-~~~~~l~~~~~~~~~~~~~ 185 (209)
T PF02854_consen 145 EENIECLCTLLKTCGKKLENS------------------E-ESPKALDEIFERLQKYANS 185 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC------------------H-HHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHhcC------------------C-CchhHHHHHHHHHHHHHHh
Confidence 899999999999977664410 0 2256677887777766554
No 62
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=77.29 E-value=31 Score=35.67 Aligned_cols=63 Identities=22% Similarity=0.261 Sum_probs=53.2
Q ss_pred hhcccchhHHHHHhhccccccccCcchhhhHHHHHHHHHhhchhHHHHHHHHHHHHHHhhchH
Q 008865 76 LIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQLLAAEEIVERDAVHKALMSLLRQDVK 138 (550)
Q Consensus 76 LcEDed~~IR~qaik~Lp~lck~~~e~~~riaDVL~QLLqsdd~~E~~~v~~aL~sllk~D~k 138 (550)
-..-.|+.||..|++-|-.+|-=++++......++.+.++.++......+=+++..++-....
T Consensus 35 ~v~~~~~~vR~~al~cLGl~~Lld~~~a~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~ 97 (298)
T PF12719_consen 35 AVQSSDPAVRELALKCLGLCCLLDKELAKEHLPLFLQALQKDDEEVKITALKALFDLLLTHGI 97 (298)
T ss_pred HhcCCCHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCc
Confidence 345677899999999999999999999999999999999888777777777777777776543
No 63
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=77.19 E-value=32 Score=35.56 Aligned_cols=192 Identities=17% Similarity=0.247 Sum_probs=94.2
Q ss_pred CChHHHHHHHHHHHhhhcccchhhhcCChHHHHHHHHHHHHhhhcccchHHHH--HHHHHHhhccccCCCCchhHHHHHH
Q 008865 155 STDEFIREKVLSFIRDKVFPLKAELLKPQEEMERHITDLIKKSLEDVTGAEFR--MFMDFLKSLSLFGEKAPTERMKELI 232 (550)
Q Consensus 155 ~~eE~vREr~lkFl~~kl~~l~~e~l~~~eE~Ee~i~~~ikKvL~dVt~~EF~--l~m~lL~sL~~~~~~~~~gr~qeLv 232 (550)
++|+.+|+|.+.+|..=+..++++.+. ++--..+++-...-|.|.....-. -+-.++ .++.+. .+....++
T Consensus 10 sed~~~R~ka~~~Ls~vL~~lp~~~L~--~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~-~~~~~~----~~~~~~i~ 82 (262)
T PF14500_consen 10 SEDPIIRAKALELLSEVLERLPPDFLS--RQEVQVLLDFFCSRLDDHACVQPALKGLLALV-KMKNFS----PESAVKIL 82 (262)
T ss_pred CCCHHHHHHHHHHHHHHHHhCCHhhcc--HHHHHHHHHHHHHHhccHhhHHHHHHHHHHHH-hCcCCC----hhhHHHHH
Confidence 567788999999999888888888773 333455555555555554433222 222222 344442 23346666
Q ss_pred HHHHHhhcccccCCCCChhhHHHHHHHHHHhhhhhcc--CCCchhHHHHHHhhhcccCCCCChh--hhhhHHHHHHHhCC
Q 008865 233 GIIEGQADLDAQFNVSDADHIDRLISCLYMALPFFLR--GASGSKFLNYLNKHIIPVFDKLPEE--RKLDLLKALAEISP 308 (550)
Q Consensus 233 ~~i~eqa~Ld~~f~~sD~d~idRli~cl~~Alp~fs~--~v~st~f~~y~~~~IlP~l~~L~~~--~kl~lLK~lAE~s~ 308 (550)
+.+....+... +..++--.+=+++.++ +.-+.. ..-+..|+.-++.-+=. ++=|.. .=.++++++...-+
T Consensus 83 ~~l~~~~~~q~-~~q~~R~~~~~ll~~l---~~~~~~~l~~~~~~fv~~~i~~~~g--EkDPRnLl~~F~l~~~i~~~~~ 156 (262)
T PF14500_consen 83 RSLFQNVDVQS-LPQSTRYAVYQLLDSL---LENHREALQSMGDDFVYGFIQLIDG--EKDPRNLLLSFKLLKVILQEFD 156 (262)
T ss_pred HHHHHhCChhh-hhHHHHHHHHHHHHHH---HHHhHHHHHhchhHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHHHhcc
Confidence 66665433311 1111111111112111 111111 11134555544432221 000111 12244454444322
Q ss_pred CCCchhhhhhhHHHHHHHHhhCCC---CCCCCC------ccchHHHHHHHHHHHHhhhc-Cchhhhhc
Q 008865 309 YTTPQDSRQILPSVAVLLKKYMPL---RKTGGE------EMNFTYVECLLYTFHHLAHK-APNATNSL 366 (550)
Q Consensus 309 ~~~~~~a~~~l~~i~~~L~~~mP~---~~~~~~------~l~fS~vEcLL~afh~L~~k-~p~~l~~~ 366 (550)
..+..+.+|+.+.-|.|- ||.++| +|.-+.-+|+- |=+.+|.. .|..+.++
T Consensus 157 ------~~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~-s~~~fa~~~~p~LleKL 217 (262)
T PF14500_consen 157 ------ISEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLS-STPLFAPFAFPLLLEKL 217 (262)
T ss_pred ------cchhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhc-CcHhhHHHHHHHHHHHH
Confidence 366788999999999998 555444 56766677764 33333322 44444443
No 64
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=76.92 E-value=25 Score=34.21 Aligned_cols=92 Identities=21% Similarity=0.220 Sum_probs=68.0
Q ss_pred HHHHHHHhhhhhHHhc----cCCCcchHHHHHhhhhhcccchhHHHHHhhccccccccCcchhhhH-HHHHHHHHhhchh
Q 008865 45 LKAKQLAAQLIPRFFK----FFPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKI-VDILVQLLAAEEI 119 (550)
Q Consensus 45 ~k~K~LAaQfI~kffk----~FP~L~e~Ai~a~lDLcEDed~~IR~qaik~Lp~lck~~~e~~~ri-aDVL~QLLqsdd~ 119 (550)
.++=+.|.++|...|. +|....+.-+..+++.|-|.-..||..|...|-.+|...+ +.+++ ..+|.+.+.+-.+
T Consensus 67 s~v~~~A~~~l~~l~~~l~~~~~~~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~-~~~~~~~~~l~~~~~~Kn~ 145 (228)
T PF12348_consen 67 SKVSKTACQLLSDLARQLGSHFEPYADILLPPLLKKLGDSKKFIREAANNALDAIIESCS-YSPKILLEILSQGLKSKNP 145 (228)
T ss_dssp --HHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS--H--HHHHHHHHHHTT-S-H
T ss_pred HHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCC-cHHHHHHHHHHHHHhCCCH
Confidence 3344567777766664 4666778889999999999999999999999999999875 67887 9999999999999
Q ss_pred HHHHHHHHHHHHHHhhch
Q 008865 120 VERDAVHKALMSLLRQDV 137 (550)
Q Consensus 120 ~E~~~v~~aL~sllk~D~ 137 (550)
.-+..+-+.|..++..-+
T Consensus 146 ~vR~~~~~~l~~~l~~~~ 163 (228)
T PF12348_consen 146 QVREECAEWLAIILEKWG 163 (228)
T ss_dssp HHHHHHHHHHHHHHTT--
T ss_pred HHHHHHHHHHHHHHHHcc
Confidence 999999888888888766
No 65
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=75.97 E-value=4.3 Score=44.76 Aligned_cols=10 Identities=30% Similarity=0.564 Sum_probs=5.4
Q ss_pred hhhcCCCCccC
Q 008865 455 PLHSKTPSFIG 465 (550)
Q Consensus 455 ~l~~~pPsf~~ 465 (550)
.+.++ |.+++
T Consensus 346 ~i~As-p~~ig 355 (419)
T KOG0116|consen 346 AIEAS-PLEIG 355 (419)
T ss_pred hhhcC-ccccC
Confidence 33344 67776
No 66
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=75.35 E-value=2.5 Score=32.35 Aligned_cols=49 Identities=18% Similarity=0.260 Sum_probs=34.2
Q ss_pred HHHHHhhhhhHHh----ccCCCcchHHHHHhhhhhcccchhHHHHHhhccccc
Q 008865 47 AKQLAAQLIPRFF----KFFPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLF 95 (550)
Q Consensus 47 ~K~LAaQfI~kff----k~FP~L~e~Ai~a~lDLcEDed~~IR~qaik~Lp~l 95 (550)
++.-|+..|...- .....+..+.+..++++.+|++..||.+|...|-+|
T Consensus 3 vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 3 VRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 4445555554322 223335668899999999999999999999887543
No 67
>KOG3172 consensus Small nuclear ribonucleoprotein Sm D3 [RNA processing and modification]
Probab=74.98 E-value=1.7 Score=39.24 Aligned_cols=12 Identities=17% Similarity=0.310 Sum_probs=8.2
Q ss_pred hhhhcCCCCccC
Q 008865 454 KPLHSKTPSFIG 465 (550)
Q Consensus 454 ~~l~~~pPsf~~ 465 (550)
-|+++|.|.|+.
T Consensus 74 PdmLKnAPmFkk 85 (119)
T KOG3172|consen 74 PDMLKNAPMFKK 85 (119)
T ss_pred chHhhcCccccc
Confidence 666777777773
No 68
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=74.93 E-value=34 Score=37.16 Aligned_cols=55 Identities=16% Similarity=0.286 Sum_probs=35.8
Q ss_pred hhHHHHHHhhhcccCC-CCCh--hhhhhHHHHHHHhCCCCCchhhhhhhHHHHHHHHhhCCC
Q 008865 274 SKFLNYLNKHIIPVFD-KLPE--ERKLDLLKALAEISPYTTPQDSRQILPSVAVLLKKYMPL 332 (550)
Q Consensus 274 t~f~~y~~~~IlP~l~-~L~~--~~kl~lLK~lAE~s~~~~~~~a~~~l~~i~~~L~~~mP~ 332 (550)
..+..|+.++|+|-|. +... =.|.+.+|.++-+...-+ .+.+..+++.|...+..
T Consensus 300 v~v~~Ff~~~v~peL~~~~~~~piLka~aik~~~~Fr~~l~----~~~l~~~~~~l~~~L~~ 357 (370)
T PF08506_consen 300 VDVVDFFSQHVLPELQPDVNSHPILKADAIKFLYTFRNQLP----KEQLLQIFPLLVNHLQS 357 (370)
T ss_dssp S-HHHHHHHHTCHHHH-SS-S-HHHHHHHHHHHHHHGGGS-----HHHHHHHHHHHHHHTTS
T ss_pred ccHHHHHHHHhHHHhcccCCCCcchHHHHHHHHHHHHhhCC----HHHHHHHHHHHHHHhCC
Confidence 3789999999999777 2211 257777777777755433 34556677777777754
No 69
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=74.87 E-value=30 Score=42.36 Aligned_cols=139 Identities=14% Similarity=0.194 Sum_probs=92.4
Q ss_pred hHHHHHhhhhhcccchhHHHHHhhccccccccCcch-----hhhHHHHHHHHHhhch-hHHHHHHHHHHHHHHhhchHHH
Q 008865 67 SRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEY-----LSKIVDILVQLLAAEE-IVERDAVHKALMSLLRQDVKAS 140 (550)
Q Consensus 67 e~Ai~a~lDLcEDed~~IR~qaik~Lp~lck~~~e~-----~~riaDVL~QLLqsdd-~~E~~~v~~aL~sllk~D~k~t 140 (550)
++-++.++-...|.++-||-.|..+|+++..|=.-. ..++-+-|...|-+.+ +.+-.++-.||+.++--.++..
T Consensus 388 ~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~ 467 (1075)
T KOG2171|consen 388 PKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSI 467 (1075)
T ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHH
Confidence 356788999999999999999999999999985443 4556677777776644 4777888899999999999999
Q ss_pred HHHHHHhhccC----CCCCChHHHHHHHHHHHhhhcccchhhhcCChHHHHHHHHHHHHhhhcccchHHHHHH
Q 008865 141 LTALFKHIGSV----DEPSTDEFIREKVLSFIRDKVFPLKAELLKPQEEMERHITDLIKKSLEDVTGAEFRMF 209 (550)
Q Consensus 141 Lt~lf~qI~~~----~e~~~eE~vREr~lkFl~~kl~~l~~e~l~~~eE~Ee~i~~~ikKvL~dVt~~EF~l~ 209 (550)
|...+++|... =..++.-.+||.+++=|..--....... ..-=+.+...++++|+..+.+|+..+
T Consensus 468 l~pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~~F----~pY~d~~Mp~L~~~L~n~~~~d~r~L 536 (1075)
T KOG2171|consen 468 LEPYLDGLMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQEKF----IPYFDRLMPLLKNFLQNADDKDLREL 536 (1075)
T ss_pred HHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhh----HhHHHHHHHHHHHHHhCCCchhhHHH
Confidence 99988888720 0112233455555542221110000000 01124456777788887777777543
No 70
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=74.68 E-value=15 Score=40.37 Aligned_cols=86 Identities=22% Similarity=0.211 Sum_probs=64.6
Q ss_pred HHHHhhhhhcccchhHHHHHhhccccccccCcchhhhHHHHHHHHHhhchhHHHHHHHHHHHHHHhhchHHHHHHHHHhh
Q 008865 69 AVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQLLAAEEIVERDAVHKALMSLLRQDVKASLTALFKHI 148 (550)
Q Consensus 69 Ai~a~lDLcEDed~~IR~qaik~Lp~lck~~~e~~~riaDVL~QLLqsdd~~E~~~v~~aL~sllk~D~k~tLt~lf~qI 148 (550)
+++++++..+|.++.||..+++.|-.+-. +...+.|..+|.++++..+-.+=.+| .....||-..|..+++
T Consensus 87 ~~~~L~~~L~d~~~~vr~aaa~ALg~i~~------~~a~~~L~~~L~~~~p~vR~aal~al-~~r~~~~~~~L~~~L~-- 157 (410)
T TIGR02270 87 DLRSVLAVLQAGPEGLCAGIQAALGWLGG------RQAEPWLEPLLAASEPPGRAIGLAAL-GAHRHDPGPALEAALT-- 157 (410)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHhcCCc------hHHHHHHHHHhcCCChHHHHHHHHHH-HhhccChHHHHHHHhc--
Confidence 59999999999999999999999976543 47889999999999998776665444 3444566655555543
Q ss_pred ccCCCCCChHHHHHHHHHHHh
Q 008865 149 GSVDEPSTDEFIREKVLSFIR 169 (550)
Q Consensus 149 ~~~~e~~~eE~vREr~lkFl~ 169 (550)
.++-.||...+.-|.
T Consensus 158 ------d~d~~Vra~A~raLG 172 (410)
T TIGR02270 158 ------HEDALVRAAALRALG 172 (410)
T ss_pred ------CCCHHHHHHHHHHHH
Confidence 455678887776553
No 71
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=73.83 E-value=5.1 Score=36.95 Aligned_cols=52 Identities=19% Similarity=0.327 Sum_probs=40.1
Q ss_pred CHHHHHHHhhhhhHHhccCCCcchH-----HHHHhhhhhcccchhHHHHHhhccccc
Q 008865 44 SLKAKQLAAQLIPRFFKFFPDLSSR-----AVDAHLDLIEEEELGVRVQAIRGLPLF 95 (550)
Q Consensus 44 s~k~K~LAaQfI~kffk~FP~L~e~-----Ai~a~lDLcEDed~~IR~qaik~Lp~l 95 (550)
++.+--.|+.=|..|.+++|+-..- |-..++.|+..+|+.||.+|++.+-.+
T Consensus 57 d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQkl 113 (119)
T PF11698_consen 57 DPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKL 113 (119)
T ss_dssp HHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHH
T ss_pred CcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 6778888999999999999985432 456789999999999999999876443
No 72
>cd07064 AlkD_like_1 A new structural DNA glycosylase containing HEAT-like repeats. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity. The known structures for members of this fa
Probab=72.99 E-value=42 Score=33.28 Aligned_cols=108 Identities=17% Similarity=0.148 Sum_probs=75.2
Q ss_pred HHHHHHHhcCCHHHHHHHhhhhhHHhccCCCcchHHHHHhhhhhcccchhHHHHHhhccccccccCcchhhhHHHHHHHH
Q 008865 34 YEGIIEAAKTSLKAKQLAAQLIPRFFKFFPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQL 113 (550)
Q Consensus 34 y~~Il~~~Kgs~k~K~LAaQfI~kffk~FP~L~e~Ai~a~lDLcEDed~~IR~qaik~Lp~lck~~~e~~~riaDVL~QL 113 (550)
|..++.-...=.-+=.+|..++..|+.+.|.+ ...+..++.|++.=+|..||=..-.+.+.+ + ...+-+|...+
T Consensus 85 ~~~~l~~~~~Wd~vD~~~~~i~g~~~~~~~~~----~~~l~~W~~s~~~W~rR~ai~~~l~~~~~~-~-~~~l~~~~~~~ 158 (208)
T cd07064 85 LEELITTKSWWDTVDSLAKVVGGILLADYPEF----EPVMDEWSTDENFWLRRTAILHQLKYKEKT-D-TDLLFEIILAN 158 (208)
T ss_pred HHHHHcCCchHHHHHHHHHHHhHHHHhCChhH----HHHHHHHHcCCcHHHHHHHHHHHHHHHHcc-C-HHHHHHHHHHh
Confidence 44444433222445567777778888776654 677888999999988888886655555543 2 34556666677
Q ss_pred HhhchhHHHHHHHHHHHHHHhhchHHHHHHHHHh
Q 008865 114 LAAEEIVERDAVHKALMSLLRQDVKASLTALFKH 147 (550)
Q Consensus 114 Lqsdd~~E~~~v~~aL~sllk~D~k~tLt~lf~q 147 (550)
+.+++.=...+|-.+|.++-+.||..++.=|-.+
T Consensus 159 ~~d~e~fI~KAiGW~LRe~~k~d~~~V~~fl~~~ 192 (208)
T cd07064 159 LGSKEFFIRKAIGWALREYSKTNPDWVRDFVAAH 192 (208)
T ss_pred CCChHHHHHHHHHHHHHHHhccCHHHHHHHHHHh
Confidence 7788878888888889999999988766655444
No 73
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=71.94 E-value=4.7 Score=44.48 Aligned_cols=9 Identities=67% Similarity=1.110 Sum_probs=3.7
Q ss_pred CCCCCCccc
Q 008865 530 RGGIRGRGR 538 (550)
Q Consensus 530 ~~g~rgrgr 538 (550)
++|+||.||
T Consensus 396 ~gg~~~~g~ 404 (419)
T KOG0116|consen 396 RGGGRGDGG 404 (419)
T ss_pred CCCCcCCCC
Confidence 444444333
No 74
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=71.36 E-value=1.2e+02 Score=32.98 Aligned_cols=104 Identities=16% Similarity=0.211 Sum_probs=71.4
Q ss_pred HHHHHhhhhhhccccccChhhHHHHHHHhc-CCHHHHHHHhhhhhHHhccCCCcchHHHHH-----hhh-hhcccchhHH
Q 008865 13 KLYEFGERLNEAKDKSQNVKDYEGIIEAAK-TSLKAKQLAAQLIPRFFKFFPDLSSRAVDA-----HLD-LIEEEELGVR 85 (550)
Q Consensus 13 ~LY~~~~~L~~akd~~~~~~~y~~Il~~~K-gs~k~K~LAaQfI~kffk~FP~L~e~Ai~a-----~lD-LcEDed~~IR 85 (550)
.|=.+.+-+++|-|-..+. -..-.+...+ +++..+.+||+.|..-+..=|..|+.+|+. ++- |--|.+..+|
T Consensus 106 ~Le~lve~iDnAndl~~~g-gl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~ls~~~~~~~r 184 (342)
T KOG2160|consen 106 NLEELVEDIDNANDLISLG-GLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKILSSDDPNTVR 184 (342)
T ss_pred HHHHHHHhhhhHHhHhhcc-CHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHHHccCCCchHH
Confidence 3334444444444433221 2334445666 789999999999999999999999998874 222 2356667789
Q ss_pred HHHhhccccccccCcchhhh-----HHHHHHHHHhhc
Q 008865 86 VQAIRGLPLFCKDTPEYLSK-----IVDILVQLLAAE 117 (550)
Q Consensus 86 ~qaik~Lp~lck~~~e~~~r-----iaDVL~QLLqsd 117 (550)
.+|+-++..+-+.++-=+.+ ...+|.-+|++.
T Consensus 185 ~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~ 221 (342)
T KOG2160|consen 185 TKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSN 221 (342)
T ss_pred HHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcC
Confidence 99999999999988643322 467777777773
No 75
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=70.98 E-value=32 Score=42.07 Aligned_cols=65 Identities=17% Similarity=0.125 Sum_probs=51.6
Q ss_pred hhhhhHHhccCCCcchHHHHHhhhh-hcccchhHHHHHhhccccccccCcchhhhHHHHHHHHHhhch
Q 008865 52 AQLIPRFFKFFPDLSSRAVDAHLDL-IEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQLLAAEE 118 (550)
Q Consensus 52 aQfI~kffk~FP~L~e~Ai~a~lDL-cEDed~~IR~qaik~Lp~lck~~~e~~~riaDVL~QLLqsdd 118 (550)
---|+.+++.||.+.+.-||-++-= .=-=|+.||-+|=.+|-.+..-.|+|.+ .++|.++|-+=+
T Consensus 527 y~~l~~~ia~~~~y~~~~f~~L~t~Kv~HWd~~irelaa~aL~~Ls~~~pk~~a--~~~L~~lld~~l 592 (1133)
T KOG1943|consen 527 YLDLCVSIAEFSGYREPVFNHLLTKKVCHWDVKIRELAAYALHKLSLTEPKYLA--DYVLPPLLDSTL 592 (1133)
T ss_pred HHHHhHHHHhhhhHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhhHHhhc--ccchhhhhhhhc
Confidence 3568899999999999999988754 3345678999999999999988887654 367888887633
No 76
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=69.49 E-value=60 Score=34.91 Aligned_cols=67 Identities=22% Similarity=0.326 Sum_probs=41.9
Q ss_pred HHHhCCCCCchh-hhhhhHHHHHHHHhhCCCCCC--CCCccchHHHHHHHHHHHHhhhcCchhhhhccCcccc
Q 008865 303 LAEISPYTTPQD-SRQILPSVAVLLKKYMPLRKT--GGEEMNFTYVECLLYTFHHLAHKAPNATNSLCGYKIV 372 (550)
Q Consensus 303 lAE~s~~~~~~~-a~~~l~~i~~~L~~~mP~~~~--~~~~l~fS~vEcLL~afh~L~~k~p~~l~~~cg~k~~ 372 (550)
-+-+.|.|++++ +++=...+..-| .|.|..+. .+|.+-=..|||++..... +.--+.+.+.-+|-|+
T Consensus 221 p~iLlPlagpee~sEEdm~~LP~eL-QyLp~dKeRepdpdIrk~llEai~lLcaT--~~GRe~lR~kgvYpil 290 (353)
T KOG2973|consen 221 PAILLPLAGPEELSEEDMAKLPVEL-QYLPEDKEREPDPDIRKMLLEALLLLCAT--RAGREVLRSKGVYPIL 290 (353)
T ss_pred HHHHhhcCCccccCHHHHhcCCHhh-hcCCccccCCCChHHHHHHHHHHHHHHhh--hHhHHHHHhcCchHHH
Confidence 355678888877 555555555555 89997654 4677888999998765543 1122344444444444
No 77
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=69.31 E-value=5.3 Score=46.06 Aligned_cols=55 Identities=25% Similarity=0.448 Sum_probs=34.8
Q ss_pred HHHHHhhh---hhHHhccCCCcchHHHHHhhhhhcccchhHHHHHhhccccccccCcchhhhHHHHH
Q 008865 47 AKQLAAQL---IPRFFKFFPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDIL 110 (550)
Q Consensus 47 ~K~LAaQf---I~kffk~FP~L~e~Ai~a~lDLcEDed~~IR~qaik~Lp~lck~~~e~~~riaDVL 110 (550)
++.||-|. +.+|++++|.+. +..+.-..+...+..+++.-|.+...+|. ++.|.|
T Consensus 83 TreLa~Qv~~~l~~~~~~~~~i~------v~~~~gG~~~~~q~~~l~~~~~IVVgTPg---rl~d~l 140 (629)
T PRK11634 83 TRELAVQVAEAMTDFSKHMRGVN------VVALYGGQRYDVQLRALRQGPQIVVGTPG---RLLDHL 140 (629)
T ss_pred cHHHHHHHHHHHHHHHhhcCCce------EEEEECCcCHHHHHHHhcCCCCEEEECHH---HHHHHH
Confidence 45566665 556666666532 23334455566777788888999999985 555544
No 78
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=68.79 E-value=28 Score=39.37 Aligned_cols=75 Identities=27% Similarity=0.353 Sum_probs=46.8
Q ss_pred HHHHHhhhhhccc---chhHHHHHhhccccccccCcchhhhHHHHHHHHHhh-chhHHHHHHHHHHHHHHhhchHHH-HH
Q 008865 68 RAVDAHLDLIEEE---ELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQLLAA-EEIVERDAVHKALMSLLRQDVKAS-LT 142 (550)
Q Consensus 68 ~Ai~a~lDLcEDe---d~~IR~qaik~Lp~lck~~~e~~~riaDVL~QLLqs-dd~~E~~~v~~aL~sllk~D~k~t-Lt 142 (550)
.+++.+.-+++++ +..||.+||.+|..+....| .++-++|.+++.. .++.|+-++ |+..|++.+|-.. |.
T Consensus 521 ~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~---~~v~~~l~~I~~n~~e~~EvRia--A~~~lm~~~P~~~~l~ 595 (618)
T PF01347_consen 521 ESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHCP---EKVREILLPIFMNTTEDPEVRIA--AYLILMRCNPSPSVLQ 595 (618)
T ss_dssp GGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-H---HHHHHHHHHHHH-TTS-HHHHHH--HHHHHHHT---HHHHH
T ss_pred hhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcCc---HHHHHHHHHHhcCCCCChhHHHH--HHHHHHhcCCCHHHHH
Confidence 5777888888887 56689999999988865443 4788888888765 444554444 5677777765543 34
Q ss_pred HHHHh
Q 008865 143 ALFKH 147 (550)
Q Consensus 143 ~lf~q 147 (550)
.|...
T Consensus 596 ~i~~~ 600 (618)
T PF01347_consen 596 RIAQS 600 (618)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44333
No 79
>KOG3262 consensus H/ACA small nucleolar RNP component GAR1 [Translation, ribosomal structure and biogenesis]
Probab=67.74 E-value=15 Score=36.52 Aligned_cols=6 Identities=100% Similarity=1.880 Sum_probs=3.1
Q ss_pred CCCCCC
Q 008865 543 RGRGRG 548 (550)
Q Consensus 543 ~gr~~~ 548 (550)
|||+|+
T Consensus 208 rgrgR~ 213 (215)
T KOG3262|consen 208 RGRGRG 213 (215)
T ss_pred CCCCCC
Confidence 555554
No 80
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=67.57 E-value=1.7e+02 Score=34.80 Aligned_cols=32 Identities=28% Similarity=0.323 Sum_probs=26.0
Q ss_pred HHHHHhcCCHHHHHHHhhhhhHHhccCCCcch
Q 008865 36 GIIEAAKTSLKAKQLAAQLIPRFFKFFPDLSS 67 (550)
Q Consensus 36 ~Il~~~Kgs~k~K~LAaQfI~kffk~FP~L~e 67 (550)
.||-+....+-+|+=||=-+-+.|+.+||+..
T Consensus 153 KlLvS~~~~~~vkqkaALclL~L~r~spDl~~ 184 (938)
T KOG1077|consen 153 KLLVSGSSMDYVKQKAALCLLRLFRKSPDLVN 184 (938)
T ss_pred HHHhCCcchHHHHHHHHHHHHHHHhcCccccC
Confidence 55666666778999999999999999998865
No 81
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=67.53 E-value=23 Score=41.47 Aligned_cols=209 Identities=19% Similarity=0.265 Sum_probs=110.4
Q ss_pred chhHHHHHHHHHHHHHHhhchHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhhhcccchhhhcCChHHHHHHHHHHHHh
Q 008865 117 EEIVERDAVHKALMSLLRQDVKASLTALFKHIGSVDEPSTDEFIREKVLSFIRDKVFPLKAELLKPQEEMERHITDLIKK 196 (550)
Q Consensus 117 dd~~E~~~v~~aL~sllk~D~k~tLt~lf~qI~~~~e~~~eE~vREr~lkFl~~kl~~l~~e~l~~~eE~Ee~i~~~ikK 196 (550)
-|+.+-..--++|..++..=|..+ +|..|.+ .--+|.+=+.++-++.--+..+.. ..+..|-+..++-.|+.
T Consensus 285 kdn~qKs~Flk~Ls~~ip~fp~rv---~~~kiLP---~L~~el~n~~~vp~~LP~v~~i~~--~~s~~~~~~~~~p~l~p 356 (700)
T KOG2137|consen 285 KDNSQKSSFLKGLSKLIPTFPARV---LFQKILP---TLVAELVNTKMVPIVLPLVLLIAE--GLSQNEFGPKMLPALKP 356 (700)
T ss_pred cCcHHHHHHHHHHHHhhccCCHHH---HHHhhhh---HHHHHhccccccccccchhhhhhh--ccchhhhhhhhhHHHHH
Confidence 355666666677777777755543 3344431 000111112333322222222222 22466778888888888
Q ss_pred hhcccchHHHHHHHHHHhhccccCCCCchhHHHH-HHHHHHHhhcccccCCCCChhhHHHHHHHHHHhhhhhccCCCchh
Q 008865 197 SLEDVTGAEFRMFMDFLKSLSLFGEKAPTERMKE-LIGIIEGQADLDAQFNVSDADHIDRLISCLYMALPFFLRGASGSK 275 (550)
Q Consensus 197 vL~dVt~~EF~l~m~lL~sL~~~~~~~~~gr~qe-Lv~~i~eqa~Ld~~f~~sD~d~idRli~cl~~Alp~fs~~v~st~ 275 (550)
++...-..+.-+| |+..+.+...|++++++.+ .+.++-. -|+..|.-.=+++++ .+|-+.... .
T Consensus 357 i~~~~~~~~~~l~--i~e~mdlL~~Kt~~e~~~~~IlplL~~------S~~~~~~~iQ~~~L~----~lptv~e~i---D 421 (700)
T KOG2137|consen 357 IYSASDPKQALLF--ILENMDLLKEKTPPEEVKEKILPLLYR------SLEDSDVQIQELALQ----ILPTVAESI---D 421 (700)
T ss_pred HhccCCcccchhh--HHhhHHHHHhhCChHHHHHHHHHHHHH------HhcCcchhhHHHHHH----hhhHHHHhc---c
Confidence 8875433443322 2223323334566666444 4455543 222222222233332 334333333 3
Q ss_pred HHHHHHhhhcccCCCCC-----hhhhhhHHHHHHHhCCCCCchhhhhhhHHHHHHHHhh-CCCCCCCCCccchHHHHHHH
Q 008865 276 FLNYLNKHIIPVFDKLP-----EERKLDLLKALAEISPYTTPQDSRQILPSVAVLLKKY-MPLRKTGGEEMNFTYVECLL 349 (550)
Q Consensus 276 f~~y~~~~IlP~l~~L~-----~~~kl~lLK~lAE~s~~~~~~~a~~~l~~i~~~L~~~-mP~~~~~~~~l~fS~vEcLL 349 (550)
+.++-+.|+|.+..+. ...|.++|-.+|.++ ...|.-.+++.+.-+++.+ .++|. .+=.++
T Consensus 422 -~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~---q~lD~~~v~d~~lpi~~~~~~~dp~---------iv~~~~ 488 (700)
T KOG2137|consen 422 -VPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLI---QRLDKAAVLDELLPILKCIKTRDPA---------IVMGFL 488 (700)
T ss_pred -HHHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHH---HHHHHHHhHHHHHHHHHHhcCCCcH---------HHHHHH
Confidence 6788889999888872 268999999999998 4456666777777777777 44432 233344
Q ss_pred HHHHHhhhcCch
Q 008865 350 YTFHHLAHKAPN 361 (550)
Q Consensus 350 ~afh~L~~k~p~ 361 (550)
-++|.|+-..|+
T Consensus 489 ~i~~~l~~~~~~ 500 (700)
T KOG2137|consen 489 RIYEALALIIYS 500 (700)
T ss_pred HHHHHHHhhccc
Confidence 455555555444
No 82
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=64.94 E-value=54 Score=37.76 Aligned_cols=186 Identities=19% Similarity=0.251 Sum_probs=118.1
Q ss_pred CCHHHHHHHhhhhhHHhc---cCCCc--chHHHHHhhhhhcccchhHHHHHhhccccccccCc-chhhhHHHHHHHHHhh
Q 008865 43 TSLKAKQLAAQLIPRFFK---FFPDL--SSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTP-EYLSKIVDILVQLLAA 116 (550)
Q Consensus 43 gs~k~K~LAaQfI~kffk---~FP~L--~e~Ai~a~lDLcEDed~~IR~qaik~Lp~lck~~~-e~~~riaDVL~QLLqs 116 (550)
.++.+.+++.-.+..|-+ .=|+- -++-|+.+.+=.-..++-|+..||+=|-.|.+-.+ +.+.-.++||+-+|-.
T Consensus 220 ~s~eVr~~~~t~l~~fL~eI~s~P~s~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc 299 (675)
T KOG0212|consen 220 SSDEVRTLTDTLLSEFLAEIRSSPSSMDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPC 299 (675)
T ss_pred CcHHHHHHHHHHHHHHHHHHhcCccccCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccC
Confidence 556666676666655543 22322 23456666666667777899888888877776544 4466688888777654
Q ss_pred ---chh---HHHHHHHH-HHHHHHhh-------chHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhhhcccchhhhcCC
Q 008865 117 ---EEI---VERDAVHK-ALMSLLRQ-------DVKASLTALFKHIGSVDEPSTDEFIREKVLSFIRDKVFPLKAELLKP 182 (550)
Q Consensus 117 ---dd~---~E~~~v~~-aL~sllk~-------D~k~tLt~lf~qI~~~~e~~~eE~vREr~lkFl~~kl~~l~~e~l~~ 182 (550)
.++ .|..+..| .|+.++.. |...++.++-.++. .+-+..|-.++++|..=....|.+++.
T Consensus 300 ~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~id~~~ii~vl~~~l~-----~~~~~tri~~L~Wi~~l~~~~p~ql~~- 373 (675)
T KOG0212|consen 300 LSDTEEMSIKEYAQMVNGLLLKLVSSERLKEEIDYGSIIEVLTKYLS-----DDREETRIAVLNWIILLYHKAPGQLLV- 373 (675)
T ss_pred CCCCccccHHHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHhh-----cchHHHHHHHHHHHHHHHhhCcchhhh-
Confidence 222 34444444 67777765 55568888888887 777889999999999876667777663
Q ss_pred hHHHHHHHHHHHHhhhcccchHHHHHHHHHHhhccccCCCCchhH--HHHHHHHHHHh
Q 008865 183 QEEMERHITDLIKKSLEDVTGAEFRMFMDFLKSLSLFGEKAPTER--MKELIGIIEGQ 238 (550)
Q Consensus 183 ~eE~Ee~i~~~ikKvL~dVt~~EF~l~m~lL~sL~~~~~~~~~gr--~qeLv~~i~eq 238 (550)
.-.-|..-+.|.|.|-+.+=..+-.+++.++-.-+ .+|-.| .+.|++++.|+
T Consensus 374 ---h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s~-~~~~~~~fl~sLL~~f~e~ 427 (675)
T KOG0212|consen 374 ---HNDSIFLTLLKTLSDRSDEVVLLALSLLASICSSS-NSPNLRKFLLSLLEMFKED 427 (675)
T ss_pred ---hccHHHHHHHHhhcCchhHHHHHHHHHHHHHhcCc-ccccHHHHHHHHHHHHhhh
Confidence 23345566668888876444334466666554332 232223 45577777775
No 83
>KOG2567 consensus Uncharacterized conserved protein [Function unknown]
Probab=64.76 E-value=4.5 Score=39.29 Aligned_cols=24 Identities=25% Similarity=0.253 Sum_probs=13.5
Q ss_pred HhhhhhcCCCCccCCCcccccccccC
Q 008865 452 MSKPLHSKTPSFIGDKSVNLSWKEAT 477 (550)
Q Consensus 452 li~~l~~~pPsf~~~~~i~lSW~~~~ 477 (550)
=|-.|+... -++-+.|+.+|+...
T Consensus 70 RipgLhQ~t--~l~~~sv~d~W~p~~ 93 (179)
T KOG2567|consen 70 RIPGLHQVT--RLRYTSVEDVWEPTE 93 (179)
T ss_pred hCcchhhhc--eeeeeehhhcccccc
Confidence 344555542 222248999998754
No 84
>TIGR00207 fliG flagellar motor switch protein FliG. The fliG protein along with fliM and fliN interact to form the switch complex of the bacterial flagellar motor located at the base of the basal body. This complex interacts with chemotaxis proteins (eg CHEY). In addition the complex interacts with other components of the motor that determine the direction of flagellar rotation. The model contains putative members of the fliG family at scores of less than 100 from Agrobacterium radiobacter and Sinorhizobium meliloti as well as fliG-like genes from treponema pallidum and Borrelia burgdorferi. That is why the suggested cutoff is set at 20 but was set at 100 to construct the family.
Probab=63.28 E-value=1.6e+02 Score=31.61 Aligned_cols=157 Identities=17% Similarity=0.226 Sum_probs=92.8
Q ss_pred HHHHHH-HHHhhhhhhccccccChhhH-HHHHHHhcCCHHHHHHHhhhhhH-Hhc-cCCCcchHHHHHhhhhhcccchh-
Q 008865 9 KQIEKL-YEFGERLNEAKDKSQNVKDY-EGIIEAAKTSLKAKQLAAQLIPR-FFK-FFPDLSSRAVDAHLDLIEEEELG- 83 (550)
Q Consensus 9 ~~ie~L-Y~~~~~L~~akd~~~~~~~y-~~Il~~~Kgs~k~K~LAaQfI~k-ffk-~FP~L~e~Ai~a~lDLcEDed~~- 83 (550)
+.++.+ .+++..+...+.-...-.+| +.+|..+-|..+++.+-..+-+. -.+ .|..|+.---..+.+++.+|-++
T Consensus 55 ~~~~~vl~eF~~~~~~~~~~~~g~~~~~~~~L~~alg~~~a~~il~~i~~~~~~~~~~~~L~~~~~~~la~~l~~EhPQ~ 134 (338)
T TIGR00207 55 QQKDDVLEEFEQIAEAQAYINIGGLDYAREVLEKALGEEKAASILNDLTSSLQTAPGFEFLRKAEPQQIADFIQQEHPQT 134 (338)
T ss_pred HHHHHHHHHHHHHHHhcCCccCChHHHHHHHHHHhcCHHHHHHHHHHHhcccccCchhHHHHCCCHHHHHHHHHccCHHH
Confidence 334444 46666664443333566677 88999999988888775555443 244 37777777778888999999887
Q ss_pred -----------------------HHHHHhhccccccccCcchhhhHHHHHHHHHhhc--hhHHHHHHHHHHHHHHhhchH
Q 008865 84 -----------------------VRVQAIRGLPLFCKDTPEYLSKIVDILVQLLAAE--EIVERDAVHKALMSLLRQDVK 138 (550)
Q Consensus 84 -----------------------IR~qaik~Lp~lck~~~e~~~riaDVL~QLLqsd--d~~E~~~v~~aL~sllk~D~k 138 (550)
.|..-++.+-.+-.=+|+-+..|.++|-+.+..- ......- .+.+..+|..=++
T Consensus 135 iAliLs~L~p~~AA~VL~~Lp~~~~~ei~~ria~l~~vs~~~i~~ie~~L~~~~~~~~~~~~~~gG-~~~~a~ILN~~~~ 213 (338)
T TIGR00207 135 IALILSHLDPAQAADILSLFPEEVQAEVARRIATMGRTSPEVVAEVERVLEGKLDSLNSDYTKMGG-VRAVAEIINLMDR 213 (338)
T ss_pred HHHHHHcCCHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhccccccCCh-HHHHHHHHHhCCc
Confidence 3444444555555555666666666766555432 1111111 1334566666666
Q ss_pred HHHHHHHHhhccCCCCCChHHHHHHHHHH
Q 008865 139 ASLTALFKHIGSVDEPSTDEFIREKVLSF 167 (550)
Q Consensus 139 ~tLt~lf~qI~~~~e~~~eE~vREr~lkF 167 (550)
.+-..++..|.. ..|.--+.+|++++.|
T Consensus 214 ~~~~~il~~L~~-~dp~la~~Ir~~mF~F 241 (338)
T TIGR00207 214 KTEKTIITSLEE-FDPELAEEIKKEMFVF 241 (338)
T ss_pred hHHHHHHHHHHH-hCHHHHHHHHHHccCH
Confidence 666777777752 1122223467777766
No 85
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=62.79 E-value=3.3e+02 Score=32.60 Aligned_cols=98 Identities=21% Similarity=0.291 Sum_probs=77.6
Q ss_pred cCCCcchHHHHHhhhhhcccchhHHHHHhhccccccccCcch--hhhHHHHHHHHHhhchhHHHHHHHHHHHHHHhh---
Q 008865 61 FFPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEY--LSKIVDILVQLLAAEEIVERDAVHKALMSLLRQ--- 135 (550)
Q Consensus 61 ~FP~L~e~Ai~a~lDLcEDed~~IR~qaik~Lp~lck~~~e~--~~riaDVL~QLLqsdd~~E~~~v~~aL~sllk~--- 135 (550)
.=|+|=..|.|.+=++.-+.+++||-=|+..+-.+|-..+-+ +++--|...-.|.+|- .+.+.++|+.=|+-|
T Consensus 322 ~e~~ll~~~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~~s~davK~h~d~Ii~sLkter--DvSirrravDLLY~mcD~ 399 (938)
T KOG1077|consen 322 SEPELLSRAVNQLGQFLSHRETNIRYLALESMCKLASSEFSIDAVKKHQDTIINSLKTER--DVSIRRRAVDLLYAMCDV 399 (938)
T ss_pred CcHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHhccchHHHHHHHHHHHHHHhcccc--chHHHHHHHHHHHHHhch
Confidence 347778899999999999999999999999999888775544 7777888888888763 467788888888877
Q ss_pred -chHHHHHHHHHhhccCCCCCChHHHHHHHH
Q 008865 136 -DVKASLTALFKHIGSVDEPSTDEFIREKVL 165 (550)
Q Consensus 136 -D~k~tLt~lf~qI~~~~e~~~eE~vREr~l 165 (550)
+.|-.+..|+.-|. .-|-.+||.+.
T Consensus 400 ~Nak~IV~elLqYL~-----tAd~sireeiv 425 (938)
T KOG1077|consen 400 SNAKQIVAELLQYLE-----TADYSIREEIV 425 (938)
T ss_pred hhHHHHHHHHHHHHh-----hcchHHHHHHH
Confidence 78888888888887 34455676543
No 86
>smart00582 RPR domain present in proteins, which are involved in regulation of nuclear pre-mRNA.
Probab=62.42 E-value=21 Score=31.67 Aligned_cols=82 Identities=7% Similarity=0.181 Sum_probs=52.6
Q ss_pred HHHHHhhccccccccCcchhhhHHHHHHHHHhhchhHHH--------HHHHHHHHH---HHhhchHHHHHHHHHhhccCC
Q 008865 84 VRVQAIRGLPLFCKDTPEYLSKIVDILVQLLAAEEIVER--------DAVHKALMS---LLRQDVKASLTALFKHIGSVD 152 (550)
Q Consensus 84 IR~qaik~Lp~lck~~~e~~~riaDVL~QLLqsdd~~E~--------~~v~~aL~s---llk~D~k~tLt~lf~qI~~~~ 152 (550)
.-...|+.+..+|.++.++-+.|++++.+-+....+... ++++++... .+.......+...|.++..
T Consensus 11 ~s~~~I~~lt~~~~~~~~~a~~Iv~~i~~~~~~~~~~~kL~~LYlindIl~n~~~~~~~~f~~~~~~~~~~~~~~~~~-- 88 (121)
T smart00582 11 NSQESIQTLTKWAIEHASHAKEIVELWEKYIKKAPPPRKLPLLYLLDSIVQNSKRKYGSEFGDELGPVFQDALRDVLG-- 88 (121)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccceehhHHhHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHH--
Confidence 456789999999999999999999999999888666321 344544432 3333444455555555542
Q ss_pred CCCChHHHHHHHHHHHh
Q 008865 153 EPSTDEFIREKVLSFIR 169 (550)
Q Consensus 153 e~~~eE~vREr~lkFl~ 169 (550)
...+.+|.++.+.+.
T Consensus 89 --~~~~~~~~ki~kll~ 103 (121)
T smart00582 89 --AANDETKKKIRRLLN 103 (121)
T ss_pred --hCCHHHHHHHHHHHH
Confidence 222456666665444
No 87
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=62.38 E-value=3.2e+02 Score=32.94 Aligned_cols=67 Identities=21% Similarity=0.280 Sum_probs=44.7
Q ss_pred HHhhhhhHHhccCCCcchHHHHHhhhhhcccchhHHHHHhhccccccccCcchhhhHHHHHHHHHhhc
Q 008865 50 LAAQLIPRFFKFFPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQLLAAE 117 (550)
Q Consensus 50 LAaQfI~kffk~FP~L~e~Ai~a~lDLcEDed~~IR~qaik~Lp~lck~~~e~~~riaDVL~QLLqsd 117 (550)
..-+||.+--..=|....+=|.+++.|.-..++.|+-.|--.|..++-+ |.-++.-|+-+.+|+..+
T Consensus 225 ViVE~Irkv~~~~p~~~~~~i~~i~~lL~stssaV~fEaa~tlv~lS~~-p~alk~Aa~~~i~l~~ke 291 (948)
T KOG1058|consen 225 VIVELIRKVCLANPAEKARYIRCIYNLLSSTSSAVIFEAAGTLVTLSND-PTALKAAASTYIDLLVKE 291 (948)
T ss_pred HHHHHHHHHHhcCHHHhhHHHHHHHHHHhcCCchhhhhhcceEEEccCC-HHHHHHHHHHHHHHHHhc
Confidence 3445666666666666666677777777777777777777777776653 566777777777777653
No 88
>PF07539 DRIM: Down-regulated in metastasis; InterPro: IPR011430 These eukaryotic proteins include DRIM (Down-Regulated In Metastasis) (O75691 from SWISSPROT), which is differentially expressed in metastatic and non-metastatic human breast carcinoma cells []. It is believed to be involved in processing of non-coding RNA [].
Probab=61.29 E-value=50 Score=31.09 Aligned_cols=120 Identities=22% Similarity=0.280 Sum_probs=72.0
Q ss_pred chHHHHHhhhhhcccchhHHHHHhhccccccccCcchhhhHHHHHHHHHhhchhHHHHHHHHHHHHHHhhchHHHHHHHH
Q 008865 66 SSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQLLAAEEIVERDAVHKALMSLLRQDVKASLTALF 145 (550)
Q Consensus 66 ~e~Ai~a~lDLcEDed~~IR~qaik~Lp~lck~~~e~~~riaDVL~QLLqsdd~~E~~~v~~aL~sllk~D~k~tLt~lf 145 (550)
+++--+.+++|+-+.|+.|++.|++.|-..-. .|+.+-.|-|..||... ..+..|.++...+..++
T Consensus 15 ~~~l~~~~~~LL~~~d~~vQklAL~cll~~k~---~~l~pY~d~L~~Lldd~------~frdeL~~f~~~~~~~~----- 80 (141)
T PF07539_consen 15 SDELYDALLRLLSSRDPEVQKLALDCLLTWKD---PYLTPYKDNLENLLDDK------TFRDELTTFNLSDESSV----- 80 (141)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc---HHHHhHHHHHHHHcCcc------hHHHHHHhhcccCCcCC-----
Confidence 57778899999999999999999999988643 47888889999888643 22222222222211111
Q ss_pred HhhccCCCCCChHHHHHHHHH----HHhhhcccchhhhcCChHHHHHHHHHHHHhhhcccchHHHHHHHHHHh
Q 008865 146 KHIGSVDEPSTDEFIREKVLS----FIRDKVFPLKAELLKPQEEMERHITDLIKKSLEDVTGAEFRMFMDFLK 214 (550)
Q Consensus 146 ~qI~~~~e~~~eE~vREr~lk----Fl~~kl~~l~~e~l~~~eE~Ee~i~~~ikKvL~dVt~~EF~l~m~lL~ 214 (550)
| ++.=|+.++- -|-.||..-+..-. +.... -..|...|...+.+|+..|++++-
T Consensus 81 --I--------~~ehR~~l~pvvlRILygk~~~~~~~~~--~~~~r---R~aIL~~L~~l~~~El~~Fl~l~~ 138 (141)
T PF07539_consen 81 --I--------EEEHRPELMPVVLRILYGKMQSRKGSGS--KKASR---RAAILRFLAGLSEEELGLFLDLML 138 (141)
T ss_pred --C--------CHHHHhHHHHHHHHHHHHHHhhcCCCCC--cchHH---HHHHHHHHhCCCHHHHHHHHHHHh
Confidence 1 1233444443 44445544322221 11121 233445677788888888887753
No 89
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=60.31 E-value=1.9e+02 Score=33.04 Aligned_cols=291 Identities=18% Similarity=0.198 Sum_probs=155.5
Q ss_pred HHHHHHHhc-CCHHHHHHHhhhhhHHhccCCC--cc----hHHHHHhhh-hhcccchhHHHHHhhccccccccCcchhhh
Q 008865 34 YEGIIEAAK-TSLKAKQLAAQLIPRFFKFFPD--LS----SRAVDAHLD-LIEEEELGVRVQAIRGLPLFCKDTPEYLSK 105 (550)
Q Consensus 34 y~~Il~~~K-gs~k~K~LAaQfI~kffk~FP~--L~----e~Ai~a~lD-LcEDed~~IR~qaik~Lp~lck~~~e~~~r 105 (550)
...++.++. .+.....-|.+.+.|.+...+. .. .-++..+.. |+.++.+.+|..|--.|..||-.+.++...
T Consensus 68 ~~~~~~~~~S~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~ 147 (514)
T KOG0166|consen 68 LELMLAALYSDDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKV 147 (514)
T ss_pred hHHHHHHHhCCCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccc
Confidence 444555555 4555555566677766665443 11 123333444 446888999999999999999999888665
Q ss_pred H-----HHHHHHHHhhchhHHHHHHHHHHHHHHhhch--------HHHHHHHHHhhccCCCCCChHHHHHH--HHHHHhh
Q 008865 106 I-----VDILVQLLAAEEIVERDAVHKALMSLLRQDV--------KASLTALFKHIGSVDEPSTDEFIREK--VLSFIRD 170 (550)
Q Consensus 106 i-----aDVL~QLLqsdd~~E~~~v~~aL~sllk~D~--------k~tLt~lf~qI~~~~e~~~eE~vREr--~lkFl~~ 170 (550)
+ +.+|.|||++-+....+.+-+||-.+..--| -+.+..|+..|..+.. .-.+|.- +|.=||.
T Consensus 148 vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~---~~~lRn~tW~LsNlcr 224 (514)
T KOG0166|consen 148 VVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDK---LSMLRNATWTLSNLCR 224 (514)
T ss_pred cccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccc---hHHHHHHHHHHHHHHc
Confidence 4 5689999999999999999888877655432 3566777777763211 1123322 1221221
Q ss_pred hcccchhhhcCChHHHHHHHHHHHHhhhcccchHHHHHHHHHHhhccccCCCCchhHHHHHHHHHHHhhcccccCCCCCh
Q 008865 171 KVFPLKAELLKPQEEMERHITDLIKKSLEDVTGAEFRMFMDFLKSLSLFGEKAPTERMKELIGIIEGQADLDAQFNVSDA 250 (550)
Q Consensus 171 kl~~l~~e~l~~~eE~Ee~i~~~ikKvL~dVt~~EF~l~m~lL~sL~~~~~~~~~gr~qeLv~~i~eqa~Ld~~f~~sD~ 250 (550)
.-.| .|.-+....++..+.+.|.....+=..----.+++|.- .+ .+.++++.+ .
T Consensus 225 gk~P------~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsd----g~----ne~iq~vi~------------~ 278 (514)
T KOG0166|consen 225 GKNP------SPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTD----GS----NEKIQMVID------------A 278 (514)
T ss_pred CCCC------CCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhc----CC----hHHHHHHHH------------c
Confidence 1112 23446667777777777665433222111123333322 22 444555553 2
Q ss_pred hhHHHHHHHHHHhhhhh--------ccCCCchhHHH--HHHhhhcccCCCC----Chh-hhhhHHHHHHHhCCCCCchhh
Q 008865 251 DHIDRLISCLYMALPFF--------LRGASGSKFLN--YLNKHIIPVFDKL----PEE-RKLDLLKALAEISPYTTPQDS 315 (550)
Q Consensus 251 d~idRli~cl~~Alp~f--------s~~v~st~f~~--y~~~~IlP~l~~L----~~~-~kl~lLK~lAE~s~~~~~~~a 315 (550)
..+.|++.++.+.-+-+ ..=|-++.... .+....||+|..| |.+ .|=+..-.+.-++.. +.+..
T Consensus 279 gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG-~~~qi 357 (514)
T KOG0166|consen 279 GVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAG-NQEQI 357 (514)
T ss_pred cchHHHHHHHcCCCcccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcC-CHHHH
Confidence 23456666665543221 11111222221 2333667765554 333 445555566666652 22235
Q ss_pred hhhhHH-HHHHHHhhCCCCCCCCCccch-HHHHHHHHHHHHhhhcCch
Q 008865 316 RQILPS-VAVLLKKYMPLRKTGGEEMNF-TYVECLLYTFHHLAHKAPN 361 (550)
Q Consensus 316 ~~~l~~-i~~~L~~~mP~~~~~~~~l~f-S~vEcLL~afh~L~~k~p~ 361 (550)
...+.. ++..|+..|-. -.| +--||..-.-+-.....|+
T Consensus 358 qaVida~l~p~Li~~l~~-------~ef~~rKEAawaIsN~ts~g~~~ 398 (514)
T KOG0166|consen 358 QAVIDANLIPVLINLLQT-------AEFDIRKEAAWAISNLTSSGTPE 398 (514)
T ss_pred HHHHHcccHHHHHHHHhc-------cchHHHHHHHHHHHhhcccCCHH
Confidence 555555 66666666632 113 4556654444433333444
No 90
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=60.31 E-value=59 Score=33.63 Aligned_cols=66 Identities=24% Similarity=0.289 Sum_probs=49.1
Q ss_pred HHHhhhhhcccchhHHHHHhhccccccccCcchh----------hhHHHHHHHHHh--------hchhHHHHHHHHHHHH
Q 008865 70 VDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYL----------SKIVDILVQLLA--------AEEIVERDAVHKALMS 131 (550)
Q Consensus 70 i~a~lDLcEDed~~IR~qaik~Lp~lck~~~e~~----------~riaDVL~QLLq--------sdd~~E~~~v~~aL~s 131 (550)
+=++|-|.+|.++.+|.+|++-|-.|...-+.-. +=+-|.|..+|- .+...=+.++.-+|.+
T Consensus 121 iP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~L~~ 200 (282)
T PF10521_consen 121 IPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPALLS 200 (282)
T ss_pred HhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHHHH
Confidence 4467889999999999999999999987554332 225566777777 4555666777888888
Q ss_pred HHhh
Q 008865 132 LLRQ 135 (550)
Q Consensus 132 llk~ 135 (550)
|++.
T Consensus 201 L~~~ 204 (282)
T PF10521_consen 201 LLKT 204 (282)
T ss_pred HHHh
Confidence 8775
No 91
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=60.18 E-value=25 Score=36.32 Aligned_cols=76 Identities=26% Similarity=0.370 Sum_probs=54.6
Q ss_pred hHHHHHhhhhhcccchhHHHHHhhccccccccCcchhhhHHHHHHHHHhhchhHHHHHHHHHHHHHHhhchHHHHHHHHH
Q 008865 67 SRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQLLAAEEIVERDAVHKALMSLLRQDVKASLTALFK 146 (550)
Q Consensus 67 e~Ai~a~lDLcEDed~~IR~qaik~Lp~lck~~~e~~~riaDVL~QLLqsdd~~E~~~v~~aL~sllk~D~k~tLt~lf~ 146 (550)
..++..+..+++|.+..||..|+.+|..++-++ .-+++.+.+.++.++...+..+ +..+-.++.......+..
T Consensus 179 ~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~----~~~~~~l~~~~~~~~~~vr~~~---~~~l~~~~~~~~~~~l~~ 251 (335)
T COG1413 179 PEAIPLLIELLEDEDADVRRAAASALGQLGSEN----VEAADLLVKALSDESLEVRKAA---LLALGEIGDEEAVDALAK 251 (335)
T ss_pred hhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch----hhHHHHHHHHhcCCCHHHHHHH---HHHhcccCcchhHHHHHH
Confidence 456777888888888888999999988888775 3577888888888876666554 344445555555566666
Q ss_pred hhc
Q 008865 147 HIG 149 (550)
Q Consensus 147 qI~ 149 (550)
.+.
T Consensus 252 ~l~ 254 (335)
T COG1413 252 ALE 254 (335)
T ss_pred HHh
Confidence 665
No 92
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=60.14 E-value=64 Score=33.44 Aligned_cols=119 Identities=17% Similarity=0.220 Sum_probs=85.8
Q ss_pred HHHHHHhhhhhhccccccChhhHHHHHH-Hhc-CCHHHHHHHhhhhhHHhccC-CCcchHHHHHhhhhhcccchhHHHHH
Q 008865 12 EKLYEFGERLNEAKDKSQNVKDYEGIIE-AAK-TSLKAKQLAAQLIPRFFKFF-PDLSSRAVDAHLDLIEEEELGVRVQA 88 (550)
Q Consensus 12 e~LY~~~~~L~~akd~~~~~~~y~~Il~-~~K-gs~k~K~LAaQfI~kffk~F-P~L~e~Ai~a~lDLcEDed~~IR~qa 88 (550)
.+..+.++.|+..-+..+.. .-..||. -+| .-...+...+|.++-+-.+| |++.-+++.-++-|-+..-..+|.+.
T Consensus 130 ~~~~~~A~~La~~a~~~~~~-~La~il~~ya~~~fr~~~dfl~~v~~~l~~~f~P~~~~~~l~~Ll~lL~n~~~w~~~~~ 208 (262)
T PF14225_consen 130 QECIEIAEALAQVAEAQGLP-NLARILSSYAKGRFRDKDDFLSQVVSYLREAFFPDHEFQILTFLLGLLENGPPWLRRKT 208 (262)
T ss_pred HHHHHHHHHHHHHHHhCCCc-cHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCcHHHHHHH
Confidence 56677888887776543333 4555555 444 33667888889888777765 99999999999999999999999988
Q ss_pred hhcccccccc---CcchhhhHHHHHHHHHhhchhHHHHHHHHHHHH
Q 008865 89 IRGLPLFCKD---TPEYLSKIVDILVQLLAAEEIVERDAVHKALMS 131 (550)
Q Consensus 89 ik~Lp~lck~---~~e~~~riaDVL~QLLqsdd~~E~~~v~~aL~s 131 (550)
++=|-.+-.. ..-+.+.+.-+|.++||||--.|..-|-+..++
T Consensus 209 L~iL~~ll~~~d~~~~~~~dlispllrlL~t~~~~eAL~VLd~~v~ 254 (262)
T PF14225_consen 209 LQILKVLLPHVDMRSPHGADLISPLLRLLQTDLWMEALEVLDEIVT 254 (262)
T ss_pred HHHHHHHhccccCCCCcchHHHHHHHHHhCCccHHHHHHHHHHHHh
Confidence 7655433322 222566677778999999998887776555544
No 93
>PF04286 DUF445: Protein of unknown function (DUF445); InterPro: IPR007383 This entry contains proteins of unknown function. They are predicted to be transmembrane proteins with 2 or 3 TM domains.
Probab=59.70 E-value=2.2e+02 Score=29.50 Aligned_cols=140 Identities=21% Similarity=0.306 Sum_probs=68.0
Q ss_pred cChhhHHHHHHHhc---CCH----HHHHHHhhhhhHHhcc--CCCcchHHHHH---hhh-hhcccchhHHHHHhhc---c
Q 008865 29 QNVKDYEGIIEAAK---TSL----KAKQLAAQLIPRFFKF--FPDLSSRAVDA---HLD-LIEEEELGVRVQAIRG---L 92 (550)
Q Consensus 29 ~~~~~y~~Il~~~K---gs~----k~K~LAaQfI~kffk~--FP~L~e~Ai~a---~lD-LcEDed~~IR~qaik~---L 92 (550)
.+..-+..|++... -++ ..+++...++.+|.+. ...+++...+. +++ +.+|.+..+|....+. +
T Consensus 139 ~~~~l~~~il~~i~~~l~~~e~~~~I~~~i~~~~~~~~~~~~~~~l~~~i~~~l~~~l~~l~~~~~~~lr~~~~~~l~~~ 218 (367)
T PF04286_consen 139 QHQKLLDRILEKIKEYLKSEETRERIRDLIEEFLEEYLGKSFLDKLAEKIQDELDSLLEKLQEDPDHPLRQEIDQKLREL 218 (367)
T ss_pred chHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHhCcccHhHHHHHHHHHHH
Confidence 34444555554333 223 3556666666666555 34444444444 233 3336677777655544 2
Q ss_pred ccccccCcchhhhHHHHHHHHHhhchhHHH-HHHHHHHHHHHhhch------HHHHHH----HHHhhccCCCCCChHHHH
Q 008865 93 PLFCKDTPEYLSKIVDILVQLLAAEEIVER-DAVHKALMSLLRQDV------KASLTA----LFKHIGSVDEPSTDEFIR 161 (550)
Q Consensus 93 p~lck~~~e~~~riaDVL~QLLqsdd~~E~-~~v~~aL~sllk~D~------k~tLt~----lf~qI~~~~e~~~eE~vR 161 (550)
..--..+|++..++..+.-++|......+. ..+...+...+..+. ...+.. +.+.+. +++.++
T Consensus 219 i~~L~~d~~~~~~i~~~~~~~l~~~~~~~~~~~l~~~l~~~i~~~l~~~~~i~~~i~~~l~~~~~~l~------~~~~l~ 292 (367)
T PF04286_consen 219 IERLLTDPELREKIEELKDKLLSELILEEFLEELWDSLREWIKEDLSREEFIEQIISELLEELIDKLK------EDPELR 292 (367)
T ss_pred HHHHhcCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHh------cCHHHH
Confidence 222334556667777777666654332221 112223333332222 112222 333432 336778
Q ss_pred HHHHHHHhhhccc
Q 008865 162 EKVLSFIRDKVFP 174 (550)
Q Consensus 162 Er~lkFl~~kl~~ 174 (550)
+++..|+...+..
T Consensus 293 ~~i~~~i~~~l~~ 305 (367)
T PF04286_consen 293 EKINRFIENLLER 305 (367)
T ss_pred HHHHHHHHHHHHH
Confidence 8888877766543
No 94
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=59.34 E-value=11 Score=43.56 Aligned_cols=28 Identities=18% Similarity=0.144 Sum_probs=17.0
Q ss_pred cHHHHhhhhhcCCCCccCCC--cccccccc
Q 008865 448 NILAMSKPLHSKTPSFIGDK--SVNLSWKE 475 (550)
Q Consensus 448 NI~~li~~l~~~pPsf~~~~--~i~lSW~~ 475 (550)
||.-+|..-..-|..++|.. --++|+-.
T Consensus 503 ~~~~~i~~~~~~~~~~ig~i~i~~~~s~v~ 532 (629)
T PRK11634 503 HIVGAIANEGDISSRYIGNIKLFASHSTIE 532 (629)
T ss_pred HHHHHHHhhcCCChhhCCcEEEeCCceEEE
Confidence 66666666666777788754 23445544
No 95
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=58.26 E-value=34 Score=30.51 Aligned_cols=79 Identities=16% Similarity=0.131 Sum_probs=58.9
Q ss_pred HHhhhhhcccchhHHHHHhhccccccccCcchhhhHHHHHHHHHhh--chhHHHHHHHHHHHHHHhhchHHHHHHHHHhh
Q 008865 71 DAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQLLAA--EEIVERDAVHKALMSLLRQDVKASLTALFKHI 148 (550)
Q Consensus 71 ~a~lDLcEDed~~IR~qaik~Lp~lck~~~e~~~riaDVL~QLLqs--dd~~E~~~v~~aL~sllk~D~k~tLt~lf~qI 148 (550)
+.+.|+....+..-|+++|++|-.+.|-...|++..+-=++-+||+ +.+.=...+=++...+++.=....|+.+++|+
T Consensus 18 ~~l~d~~~~~~~~ek~~~l~si~~lI~~~~~~i~~~~pQI~a~L~sal~~~~l~~~al~~W~~fi~~L~~~~l~~ll~~~ 97 (107)
T PF08064_consen 18 DVLNDLRGKKPIPEKKRALRSIEELIKLGGSHISSARPQIMACLQSALEIPELREEALSCWNCFIKTLDEEDLGPLLDQI 97 (107)
T ss_pred HHHhccccCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHHCCHHHHHHHHHHH
Confidence 4566777788888999999999999998888888877666777776 45544445556666666664457788888877
Q ss_pred c
Q 008865 149 G 149 (550)
Q Consensus 149 ~ 149 (550)
.
T Consensus 98 ~ 98 (107)
T PF08064_consen 98 F 98 (107)
T ss_pred H
Confidence 5
No 96
>PF01465 GRIP: GRIP domain; InterPro: IPR000237 The GRIP (golgin-97, RanBP2alpha,Imh1p and p230/golgin-245) domain [, , ] is found in many large coiled-coil proteins. It has been shown to be sufficient for targeting to the Golgi []. The GRIP domain contains a completely conserved tyrosine residue.; GO: 0005515 protein binding, 0000042 protein targeting to Golgi; PDB: 1R4A_H 1UPT_B.
Probab=57.88 E-value=14 Score=28.35 Aligned_cols=32 Identities=25% Similarity=0.450 Sum_probs=23.8
Q ss_pred HHHHHHHhhchhHHHHHHHHHHHHHHhhchHH
Q 008865 108 DILVQLLAAEEIVERDAVHKALMSLLRQDVKA 139 (550)
Q Consensus 108 DVL~QLLqsdd~~E~~~v~~aL~sllk~D~k~ 139 (550)
-|+.|.|.++++.++...-.+|.++|+.+|..
T Consensus 10 Nvl~~fl~~~~~~~~~~llpvi~tlL~fs~~e 41 (46)
T PF01465_consen 10 NVLLQFLESREPSEREQLLPVIATLLKFSPEE 41 (46)
T ss_dssp HHHHHHHTTSS---HHHHHHHHHHHTT--HHH
T ss_pred HHHHHHhcCCchhhHHHHHHHHHHHHCCCHHH
Confidence 37899999999999998889999999998864
No 97
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=57.75 E-value=7.6 Score=42.54 Aligned_cols=14 Identities=7% Similarity=0.083 Sum_probs=6.3
Q ss_pred CChhhhhhHHHHHH
Q 008865 291 LPEERKLDLLKALA 304 (550)
Q Consensus 291 L~~~~kl~lLK~lA 304 (550)
++...+..++..|.
T Consensus 279 ~~~~~R~~~l~~F~ 292 (456)
T PRK10590 279 KSQGARTRALADFK 292 (456)
T ss_pred CCHHHHHHHHHHHH
Confidence 33344444444443
No 98
>PF12243 CTK3: CTD kinase subunit gamma CTK3
Probab=57.71 E-value=17 Score=34.41 Aligned_cols=71 Identities=18% Similarity=0.253 Sum_probs=53.3
Q ss_pred cChhhHHHHHHHhcCCHHHHHHHhhhhhHHhccCCCcchHHHHHhhhhhcccchhHHHHHhhccccccccCcchhhhHHH
Q 008865 29 QNVKDYEGIIEAAKTSLKAKQLAAQLIPRFFKFFPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVD 108 (550)
Q Consensus 29 ~~~~~y~~Il~~~Kgs~k~K~LAaQfI~kffk~FP~L~e~Ai~a~lDLcEDed~~IR~qaik~Lp~lck~~~e~~~riaD 108 (550)
+-.-.|..+|.....|.+.=+=||+|.-|| .++.|+-++|+++-||+++.+.|+.=. -..|
T Consensus 5 E~r~~F~~~L~~L~aS~qSi~kaa~fAlk~----~~~~edL~~cIle~le~~~lN~R~nI~---------------~fID 65 (139)
T PF12243_consen 5 EVRMQFTQLLRRLNASQQSIQKAAQFALKN----RDMEEDLWSCILEQLEKENLNTRINIF---------------YFID 65 (139)
T ss_pred HHHHHHHHHHHHcchhHHHHHHHHHHHHHc----cccHHHHHHHHHHHHhccchhhHHHHH---------------HHHH
Confidence 344567777776666666566688998887 799999999999999999998886533 4556
Q ss_pred HHHHHHhhch
Q 008865 109 ILVQLLAAEE 118 (550)
Q Consensus 109 VL~QLLqsdd 118 (550)
.|++.-+...
T Consensus 66 ~l~e~~~~~~ 75 (139)
T PF12243_consen 66 SLCESSQKSK 75 (139)
T ss_pred HHHHHHHhcc
Confidence 6666555554
No 99
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=57.46 E-value=2.1e+02 Score=32.41 Aligned_cols=118 Identities=20% Similarity=0.157 Sum_probs=65.5
Q ss_pred cChhhHHHHHHHhcCCHHHHHHHhhhhhHHhccCCCcchHHHHHhhhhhcccc----hhHHHHHhhccc----ccccc--
Q 008865 29 QNVKDYEGIIEAAKTSLKAKQLAAQLIPRFFKFFPDLSSRAVDAHLDLIEEEE----LGVRVQAIRGLP----LFCKD-- 98 (550)
Q Consensus 29 ~~~~~y~~Il~~~Kgs~k~K~LAaQfI~kffk~FP~L~e~Ai~a~lDLcEDed----~~IR~qaik~Lp----~lck~-- 98 (550)
...+..+.|++..+...-.-..|++.|......=+.-..+.++.+++||+... ..+|..|+=.+- ..|..
T Consensus 392 GT~~av~~i~~~I~~~~~~~~ea~~~l~~l~~~~~~Pt~e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~ 471 (618)
T PF01347_consen 392 GTNPAVKFIKDLIKSKKLTDDEAAQLLASLPFHVRRPTEELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSD 471 (618)
T ss_dssp -SHHHHHHHHHHHHTT-S-HHHHHHHHHHHHHT-----HHHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT--
T ss_pred CCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeeccc
Confidence 34455555666555433344457777776655444777999999999999653 457777776544 34665
Q ss_pred --------CcchhhhHHHHHHHHHh----hchhHHHHHHHHHHHHHHhhchHHHHHHHHHhhc
Q 008865 99 --------TPEYLSKIVDILVQLLA----AEEIVERDAVHKALMSLLRQDVKASLTALFKHIG 149 (550)
Q Consensus 99 --------~~e~~~riaDVL~QLLq----sdd~~E~~~v~~aL~sllk~D~k~tLt~lf~qI~ 149 (550)
...-..++++.|.+.|. ..|..+..++=+||-.+=.- .++..|...|.
T Consensus 472 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~~---~~i~~l~~~i~ 531 (618)
T PF01347_consen 472 SAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGHP---ESIPVLLPYIE 531 (618)
T ss_dssp ---------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-G---GGHHHHHTTST
T ss_pred ccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCCc---hhhHHHHhHhh
Confidence 23334455555655555 45557777777787766433 35555555554
No 100
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=57.06 E-value=2.4e+02 Score=29.15 Aligned_cols=138 Identities=14% Similarity=0.164 Sum_probs=91.0
Q ss_pred hhHHHHH-HHhc-CCHHHHHHHhhhhhHHhccCCCcchHHHHHhhhhhcccchhHHHHHhhccccccccCc---------
Q 008865 32 KDYEGII-EAAK-TSLKAKQLAAQLIPRFFKFFPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTP--------- 100 (550)
Q Consensus 32 ~~y~~Il-~~~K-gs~k~K~LAaQfI~kffk~FP~L~e~Ai~a~lDLcEDed~~IR~qaik~Lp~lck~~~--------- 100 (550)
.-+..|| -+++ .++..+.+|=.-+.-|==.-++++.+.+.-++...+.++..||+.|++.|-++..-..
T Consensus 26 ~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~~~~~ 105 (298)
T PF12719_consen 26 SLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELAKEHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFDSESD 105 (298)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhccchhc
Confidence 3455555 4666 6677777777777766666667777777766666666688899999988876654221
Q ss_pred ----chhhhHHHHHHHHHhhchhHHHHHHHHHHHHHHhh---ch-HHHHHHHHHhhccCCCCCChHHHHHHHHHHHhh
Q 008865 101 ----EYLSKIVDILVQLLAAEEIVERDAVHKALMSLLRQ---DV-KASLTALFKHIGSVDEPSTDEFIREKVLSFIRD 170 (550)
Q Consensus 101 ----e~~~riaDVL~QLLqsdd~~E~~~v~~aL~sllk~---D~-k~tLt~lf~qI~~~~e~~~eE~vREr~lkFl~~ 170 (550)
.....+.|+|...|.++++.-..++=.+|.-|+-. ++ ...|..|+-.--++.. .++..+|.-+=-|+..
T Consensus 106 ~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~~~~vL~~Lll~yF~p~t-~~~~~LrQ~L~~Ffp~ 182 (298)
T PF12719_consen 106 NDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISDPPKVLSRLLLLYFNPST-EDNQRLRQCLSVFFPV 182 (298)
T ss_pred cCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCccc-CCcHHHHHHHHHHHHH
Confidence 12346889999999999888788888888777755 33 5666666544432222 2234566666556554
No 101
>KOG3293 consensus Small nuclear ribonucleoprotein (snRNP) [RNA processing and modification]
Probab=56.89 E-value=6.9 Score=36.23 Aligned_cols=16 Identities=6% Similarity=0.287 Sum_probs=8.5
Q ss_pred hhcCCCCccCCCcccc
Q 008865 456 LHSKTPSFIGDKSVNL 471 (550)
Q Consensus 456 l~~~pPsf~~~~~i~l 471 (550)
||..|--|+-.++|.+
T Consensus 53 f~r~pEcYirGttIky 68 (134)
T KOG3293|consen 53 FFRMPECYIRGTTIKY 68 (134)
T ss_pred eeecceeEEecceeEE
Confidence 5556666665444443
No 102
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B.
Probab=56.72 E-value=29 Score=43.96 Aligned_cols=68 Identities=19% Similarity=0.242 Sum_probs=50.4
Q ss_pred HHHHHhhhhhHHhccCCCcchHHHHHhhhhhcccchhHHHHHhhccccccccCcchhhhHHHHHHHHHhhchh
Q 008865 47 AKQLAAQLIPRFFKFFPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQLLAAEEI 119 (550)
Q Consensus 47 ~K~LAaQfI~kffk~FP~L~e~Ai~a~lDLcEDed~~IR~qaik~Lp~lck~~~e~~~riaDVL~QLLqsdd~ 119 (550)
.+.+-+|| || =++.-=.++-.+.++|+.+--...+....|-.||+|+-|. -...+++.|.+||+.+..
T Consensus 174 ~~Lil~Ql--rw-Ld~i~d~~~l~~kl~~~l~~ap~~lq~eiI~~LPeIl~ds--~h~~v~~~L~~ll~~~~~ 241 (1426)
T PF14631_consen 174 PRLILNQL--RW-LDRIVDSEELTDKLFEVLSIAPVELQKEIISSLPEILDDS--QHDEVVEELLELLQENPE 241 (1426)
T ss_dssp HHHHHGGG--TT--S--SSHHHHHHHHHHHHHHS-TTTHHHHHHTHHHHS-GG--GHHHHHHHHHHHHHH-ST
T ss_pred HHHHHHHh--hc-cccccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcch--hHHHHHHHHHHHHhcCCc
Confidence 35556666 33 3355567888999999999888899999999999999874 368899999999998743
No 103
>KOG3080 consensus Nucleolar protein-like/EBNA1-binding protein [RNA processing and modification]
Probab=56.45 E-value=61 Score=34.48 Aligned_cols=13 Identities=23% Similarity=0.373 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHh
Q 008865 343 TYVECLLYTFHHL 355 (550)
Q Consensus 343 S~vEcLL~afh~L 355 (550)
.-+++.|-||-.|
T Consensus 146 Qa~~aVl~A~~rL 158 (328)
T KOG3080|consen 146 QALSAVLEAFPRL 158 (328)
T ss_pred HHHHHHHHHHHHH
Confidence 3456666666554
No 104
>PF05327 RRN3: RNA polymerase I specific transcription initiation factor RRN3; InterPro: IPR007991 This family consists of several eukaryotic proteins which are homologous to the Saccharomyces cerevisiae RRN3 protein. RRN3 is one of the RRN genes specifically required for the transcription of rDNA by RNA polymerase I (Pol I) in the S. cerevisiae [] RNA polymerase I complex within the nucleolus. In mammalian cells, the phosphorylation state of Rrn3 regulates rDNA transcription by determining the steady-state concentration of the Rrn3 [].; PDB: 3TJ1_B.
Probab=56.02 E-value=1.8e+02 Score=33.31 Aligned_cols=192 Identities=15% Similarity=0.176 Sum_probs=91.0
Q ss_pred hHHHHHHHHHHHHHHhhchHHHHHHHHHhhccCCCCCCh---HHHHHHHHHHHhhhcccchhhhcCChHHHHHHHHHHHH
Q 008865 119 IVERDAVHKALMSLLRQDVKASLTALFKHIGSVDEPSTD---EFIREKVLSFIRDKVFPLKAELLKPQEEMERHITDLIK 195 (550)
Q Consensus 119 ~~E~~~v~~aL~sllk~D~k~tLt~lf~qI~~~~e~~~e---E~vREr~lkFl~~kl~~l~~e~l~~~eE~Ee~i~~~ik 195 (550)
......|++||.++.+-|+. ....|..++..+.+..+. ..++ ..|+=|..-+-.|.. ..+..|-..++
T Consensus 10 ~~~~~~V~~AL~~~~~Gd~~-~Y~~L~~~l~~~~~~~d~~~~~~l~-~~L~~L~~~Vs~Ld~-------~~~~LV~ail~ 80 (563)
T PF05327_consen 10 EMYKSFVRSALESHEKGDSS-QYDELVEQLSDPSESKDAISVSQLI-RWLKALSSCVSLLDS-------SCKQLVEAILS 80 (563)
T ss_dssp HHHHHHHHHHHHHHHTT--H-HHHHHHHHHHS-TT-TTS--HHHHH-HHHHHHHHGGGGG-S-------CCHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhcCCHH-HHHHHHHHHcccccCcccccHHHHH-HHHHHHHHHHHHhhh-------HHHHHHHHHHc
Confidence 35567899999999877654 566777777322222222 1233 333323333333321 23333333322
Q ss_pred hhhcccchHHHHHHHHHHhhccccCCCCchhHHHHHHHHHHHhhc----ccccCC----CCChhhHHHHHHHHHHhhhhh
Q 008865 196 KSLEDVTGAEFRMFMDFLKSLSLFGEKAPTERMKELIGIIEGQAD----LDAQFN----VSDADHIDRLISCLYMALPFF 267 (550)
Q Consensus 196 KvL~dVt~~EF~l~m~lL~sL~~~~~~~~~gr~qeLv~~i~eqa~----Ld~~f~----~sD~d~idRli~cl~~Alp~f 267 (550)
=.--....+-...+++++..|=+.++ ......+.++++.-- .....+ ....+..+|+.. ++-.+
T Consensus 81 ~~W~~~~~~~v~~y~~Fl~~Lvsa~~----~yl~~vl~~LV~~f~p~~~~~~~~~~~~~~~~~~~~~~vH~----~L~~I 152 (563)
T PF05327_consen 81 LNWLGRDEDFVEAYIQFLINLVSAQP----KYLSPVLSMLVKNFIPPPSSIAEWPGCPPEKRREIYERVHD----ALQKI 152 (563)
T ss_dssp -TGGGS-HHHHHHHHHHHHHHHHH-G----GGHHHHHHHHHHGGGS-HHHHHH---------------HHH----HHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHhhH----HHHHHHHHHHHHhccCCCccccccchhhhhhhhhhHHHHHH----HHHHH
Confidence 11123333223456666666655432 223555666655311 111111 111123344444 44444
Q ss_pred ccCCCc-hhHHHHHHhhhcccCCCCChhhhhhHHHHHHHhCCCCCchhhhhhhHHHHHHHHhh
Q 008865 268 LRGASG-SKFLNYLNKHIIPVFDKLPEERKLDLLKALAEISPYTTPQDSRQILPSVAVLLKKY 329 (550)
Q Consensus 268 s~~v~s-t~f~~y~~~~IlP~l~~L~~~~kl~lLK~lAE~s~~~~~~~a~~~l~~i~~~L~~~ 329 (550)
.+-++. ..++.=+..+-+|+.. -+......-++.+-.++.|| +.-...++..|.+.|.+.
T Consensus 153 l~lvP~s~~~L~~~l~~~FP~~~-~~~~~~~~Yv~NlL~l~~Y~-P~L~~~Il~lIi~rLi~i 213 (563)
T PF05327_consen 153 LRLVPTSPSFLIPILVQNFPHKR-KSKDEHVNYVRNLLRLTEYC-PELRSDILSLIIERLIKI 213 (563)
T ss_dssp HHH-GGGHHHHHHHHHHTS--TT-S-HHHHHHHHHHHHHHHCC--GGGHHHHHHHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHHHcCcCCC-CChHHHHHHHHHHHHHHcch-HHHHHHHHHHHHHHHHHH
Confidence 444443 5555566668888774 45567888999999999999 555667888887777653
No 105
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=55.53 E-value=21 Score=40.99 Aligned_cols=115 Identities=18% Similarity=0.188 Sum_probs=62.9
Q ss_pred HHHHHHHhhccccCCCCchhHHHHHHHHHHHhhcccccCCCCChhhHHHHHHHHHHh-hhhhccCCCchh----HHHHHH
Q 008865 207 RMFMDFLKSLSLFGEKAPTERMKELIGIIEGQADLDAQFNVSDADHIDRLISCLYMA-LPFFLRGASGSK----FLNYLN 281 (550)
Q Consensus 207 ~l~m~lL~sL~~~~~~~~~gr~qeLv~~i~eqa~Ld~~f~~sD~d~idRli~cl~~A-lp~fs~~v~st~----f~~y~~ 281 (550)
++|..++..+|-. +| +.|++++...+..|..|-..+-++...++.-++|. ||+.-+.+-.+. =.-|.|
T Consensus 502 eqie~fa~~~Pd~---t~----snLld~f~~~~~~~~~fflc~~~~~k~va~liehi~L~l~dr~~fc~aPvnk~~p~v~ 574 (700)
T KOG0953|consen 502 EQIELFAYHLPDA---TP----SNLLDIFVKLCEVDGLFFLCNLDDFKFVAELIEHIELPLKDRYKFCTAPVNKKMPRVC 574 (700)
T ss_pred HHHHHHHHhCCCc---cH----HHHHHHHHHHHccCCceEEecchhHHHHHHHHHhCCcchhhhheeecCcccccCchHH
Confidence 3444444555543 54 44999999999999888888888887777777665 777644332211 111222
Q ss_pred hhhcc---cCCCCChhhhhhHHHHHHHhCCCCCchh--hhhhhHHHHHHHHhhC
Q 008865 282 KHIIP---VFDKLPEERKLDLLKALAEISPYTTPQD--SRQILPSVAVLLKKYM 330 (550)
Q Consensus 282 ~~IlP---~l~~L~~~~kl~lLK~lAE~s~~~~~~~--a~~~l~~i~~~L~~~m 330 (550)
..++- .+++ .+...+.-|| .+..-|.|.+.. .-+.|+++|+.|..||
T Consensus 575 ~~f~kfa~~~s~-~~~l~~~~l~-~~~~~p~~~p~t~~~L~~LEs~h~il~lYm 626 (700)
T KOG0953|consen 575 SAFLKFARQYSQ-NEPLTFLWLK-FNLGWPNKIPKTIYELEDLESLHDILDLYM 626 (700)
T ss_pred HHHHHHHHHHhc-CCcccHHHHH-HhhcCCCCCCccHHHHHHHHHHHHHHHHHH
Confidence 22111 1111 0123333444 555556654433 3344677777777766
No 106
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=55.30 E-value=8.1 Score=27.98 Aligned_cols=30 Identities=13% Similarity=0.191 Sum_probs=25.2
Q ss_pred HHHHHhhhhhcccchhHHHHHhhccccccc
Q 008865 68 RAVDAHLDLIEEEELGVRVQAIRGLPLFCK 97 (550)
Q Consensus 68 ~Ai~a~lDLcEDed~~IR~qaik~Lp~lck 97 (550)
-+|..+++|..+.|..||.+|.-.|-.+|+
T Consensus 12 g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 12 GGIPPLVQLLKSPDPEVQEEAAWALGNLAA 41 (41)
T ss_dssp THHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred ccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 467888999999999999999988877763
No 107
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=55.28 E-value=2.3e+02 Score=34.19 Aligned_cols=244 Identities=18% Similarity=0.263 Sum_probs=130.0
Q ss_pred HHHHhhhhhcccchhHHHHHhhccccc------cccCcchhhhHHHHHHHHHhhchhHHHHHHHHHHHHHHhhc------
Q 008865 69 AVDAHLDLIEEEELGVRVQAIRGLPLF------CKDTPEYLSKIVDILVQLLAAEEIVERDAVHKALMSLLRQD------ 136 (550)
Q Consensus 69 Ai~a~lDLcEDed~~IR~qaik~Lp~l------ck~~~e~~~riaDVL~QLLqsdd~~E~~~v~~aL~sllk~D------ 136 (550)
-+-..|-+...-.+.||.||.+-+..+ |-+. +.+....=||+..|..|+|..+-.|-+|+.+++..-
T Consensus 800 i~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee-~~m~~lGvvLyEylgeeypEvLgsILgAikaI~nvigm~km~ 878 (1172)
T KOG0213|consen 800 ICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEE-KLMGHLGVVLYEYLGEEYPEVLGSILGAIKAIVNVIGMTKMT 878 (1172)
T ss_pred HHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHH-HHHHHhhHHHHHhcCcccHHHHHHHHHHHHHHHHhccccccC
Confidence 344556666677777888887665544 3221 345667778888888999999999988888887653
Q ss_pred -h----HHHHHHHHHhhccCCCCCChHHHHHHHHHHHhhhcccchhhhcCChHHHHHHH---HHH---HHhhhcccchHH
Q 008865 137 -V----KASLTALFKHIGSVDEPSTDEFIREKVLSFIRDKVFPLKAELLKPQEEMERHI---TDL---IKKSLEDVTGAE 205 (550)
Q Consensus 137 -~----k~tLt~lf~qI~~~~e~~~eE~vREr~lkFl~~kl~~l~~e~l~~~eE~Ee~i---~~~---ikKvL~dVt~~E 205 (550)
| -.+|+-++. +-.|.|.+.+|.|+-. +....+++... .|-.+.- +++ -+|.+.--+-.-
T Consensus 879 pPi~dllPrltPILk--------nrheKVqen~IdLvg~-IadrgpE~v~a-REWMRIcfeLlelLkahkK~iRRaa~nT 948 (1172)
T KOG0213|consen 879 PPIKDLLPRLTPILK--------NRHEKVQENCIDLVGT-IADRGPEYVSA-REWMRICFELLELLKAHKKEIRRAAVNT 948 (1172)
T ss_pred CChhhhcccchHhhh--------hhHHHHHHHHHHHHHH-HHhcCcccCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 1 223444444 3346788888887653 33333444322 2221111 111 123333222233
Q ss_pred H----------HHHHHHHhhccccCCCCchhHHHHHH-----HHHHHhhcccccCCCC-----ChhhHHHHH-HHHHHhh
Q 008865 206 F----------RMFMDFLKSLSLFGEKAPTERMKELI-----GIIEGQADLDAQFNVS-----DADHIDRLI-SCLYMAL 264 (550)
Q Consensus 206 F----------~l~m~lL~sL~~~~~~~~~gr~qeLv-----~~i~eqa~Ld~~f~~s-----D~d~idRli-~cl~~Al 264 (550)
| +.+-.+|+.|+. ++|++... .++.|- ..+|.+. |-..=+-.. +=+-.|+
T Consensus 949 fG~IakaIGPqdVLatLlnnLkv------qeRq~RvcTtvaIaIVaE~---c~pFtVLPalmneYrtPe~nVQnGVLkal 1019 (1172)
T KOG0213|consen 949 FGYIAKAIGPQDVLATLLNNLKV------QERQNRVCTTVAIAIVAET---CGPFTVLPALMNEYRTPEANVQNGVLKAL 1019 (1172)
T ss_pred hhHHHHhcCHHHHHHHHHhcchH------HHHHhchhhhhhhhhhhhh---cCchhhhHHHHhhccCchhHHHHhHHHHH
Confidence 3 346666777754 35644432 344443 3344331 000001111 1111233
Q ss_pred hhhccCCCchhHHHHHHh-------hhcccCCCC--Ch---hh--hhhHHHHHHHhCCCCCchhh-hhhhHHHHHHHHhh
Q 008865 265 PFFLRGASGSKFLNYLNK-------HIIPVFDKL--PE---ER--KLDLLKALAEISPYTTPQDS-RQILPSVAVLLKKY 329 (550)
Q Consensus 265 p~fs~~v~st~f~~y~~~-------~IlP~l~~L--~~---~~--kl~lLK~lAE~s~~~~~~~a-~~~l~~i~~~L~~~ 329 (550)
.| ||+|+-+ .|+|.|.+. +. .+ -..+.|.+|.-++-.+-+|+ --+++.|+..+++.
T Consensus 1020 sf---------~FeyigemskdYiyav~PlleDAlmDrD~vhRqta~~~I~Hl~Lg~~g~g~eda~iHLLN~iWpNIle~ 1090 (1172)
T KOG0213|consen 1020 SF---------MFEYIGEMSKDYIYAVTPLLEDALMDRDLVHRQTAMNVIKHLALGVPGTGCEDALIHLLNLIWPNILET 1090 (1172)
T ss_pred HH---------HHHHHHHHhhhHHHHhhHHHHHhhccccHHHHHHHHHHHHHHhcCCCCcCcHHHHHHHHHHhhhhhcCC
Confidence 33 2333222 577877765 22 23 45899999999777777774 44455565555544
Q ss_pred CCCCCCCCCccchHHHHHH
Q 008865 330 MPLRKTGGEEMNFTYVECL 348 (550)
Q Consensus 330 mP~~~~~~~~l~fS~vEcL 348 (550)
. |-..-+..||+
T Consensus 1091 s-------Phviqa~~e~~ 1102 (1172)
T KOG0213|consen 1091 S-------PHVIQAFDEAM 1102 (1172)
T ss_pred C-------hHHHHHHHHHH
Confidence 4 34666777775
No 108
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=55.09 E-value=17 Score=39.95 Aligned_cols=17 Identities=18% Similarity=0.163 Sum_probs=9.3
Q ss_pred HhccCCCcchHHHHHhh
Q 008865 58 FFKFFPDLSSRAVDAHL 74 (550)
Q Consensus 58 ffk~FP~L~e~Ai~a~l 74 (550)
-|+.+-..|.+||.+++
T Consensus 20 g~~~pt~iQ~~ai~~il 36 (456)
T PRK10590 20 GYREPTPIQQQAIPAVL 36 (456)
T ss_pred CCCCCCHHHHHHHHHHh
Confidence 34555555666665554
No 109
>KOG3172 consensus Small nuclear ribonucleoprotein Sm D3 [RNA processing and modification]
Probab=54.31 E-value=12 Score=33.84 Aligned_cols=10 Identities=70% Similarity=1.328 Sum_probs=3.8
Q ss_pred CcccCCCCCC
Q 008865 535 GRGRGWGARG 544 (550)
Q Consensus 535 grgr~~g~~g 544 (550)
+||||.|+||
T Consensus 103 ~~grg~g~rg 112 (119)
T KOG3172|consen 103 ARGRGRGGRG 112 (119)
T ss_pred ccCCCCCCCC
Confidence 3333334433
No 110
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=53.94 E-value=4.8e+02 Score=31.67 Aligned_cols=115 Identities=23% Similarity=0.280 Sum_probs=82.3
Q ss_pred HHHHHHhc-CCHHHHHHHhhhhhHHhccCCCcchHHHHHh-----hhhhcccchh-------------------------
Q 008865 35 EGIIEAAK-TSLKAKQLAAQLIPRFFKFFPDLSSRAVDAH-----LDLIEEEELG------------------------- 83 (550)
Q Consensus 35 ~~Il~~~K-gs~k~K~LAaQfI~kffk~FP~L~e~Ai~a~-----lDLcEDed~~------------------------- 83 (550)
.+||-..+ .++++.+=||..|.+-.+---.++|+.+-+. +.-...+++.
T Consensus 802 stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGvvLyEylgeeypEvLgsILgAikaI~nvigm~km~pPi 881 (1172)
T KOG0213|consen 802 STILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGVVLYEYLGEEYPEVLGSILGAIKAIVNVIGMTKMTPPI 881 (1172)
T ss_pred HHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhHHHHHhcCcccHHHHHHHHHHHHHHHHhccccccCCCh
Confidence 34555555 8899999999999988876666666654332 2222233322
Q ss_pred -----------------HHHHHhhccccccccCcchhh-----hHHHHHHHHHhhchhHHHHHHHHHHHHHHhh-chHHH
Q 008865 84 -----------------VRVQAIRGLPLFCKDTPEYLS-----KIVDILVQLLAAEEIVERDAVHKALMSLLRQ-DVKAS 140 (550)
Q Consensus 84 -----------------IR~qaik~Lp~lck~~~e~~~-----riaDVL~QLLqsdd~~E~~~v~~aL~sllk~-D~k~t 140 (550)
|....|.=+-.||...|||++ ||+==|+-+|.+-...=+-++.|++==+-+. -|..+
T Consensus 882 ~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlelLkahkK~iRRaa~nTfG~IakaIGPqdV 961 (1172)
T KOG0213|consen 882 KDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRICFELLELLKAHKKEIRRAAVNTFGYIAKAIGPQDV 961 (1172)
T ss_pred hhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhcCHHHH
Confidence 566667777788888999876 6888888888888877777777777666665 78888
Q ss_pred HHHHHHhhc
Q 008865 141 LTALFKHIG 149 (550)
Q Consensus 141 Lt~lf~qI~ 149 (550)
|..|++.+.
T Consensus 962 LatLlnnLk 970 (1172)
T KOG0213|consen 962 LATLLNNLK 970 (1172)
T ss_pred HHHHHhcch
Confidence 888888776
No 111
>PF12235 FXR1P_C: Fragile X-related 1 protein C terminal; InterPro: IPR022034 Fragile X mental retardation 1 protein (FMR1P) , fragile X-related 1 protein (FXR1P) and fragile X-related 2 protein (FXR2P) are members of a small family of RNA-binding proteins that are thought to transport mRNA and to control their translation []. The proteins contain two KH domains and a RGG box that are characteristic motifs in RNA-binding proteins as well as nuclear localization and export signals. ; GO: 0003723 RNA binding; PDB: 2LA5_B.
Probab=53.82 E-value=5.5 Score=38.27 Aligned_cols=12 Identities=83% Similarity=1.589 Sum_probs=2.2
Q ss_pred CcccCCCCCCCC
Q 008865 535 GRGRGWGARGRG 546 (550)
Q Consensus 535 grgr~~g~~gr~ 546 (550)
|||||.++||||
T Consensus 112 grgRg~~~rgR~ 123 (155)
T PF12235_consen 112 GRGRGRGGRGRG 123 (155)
T ss_dssp SSSTT-------
T ss_pred CCCCCCCCCCCC
Confidence 444444666663
No 112
>KOG3428 consensus Small nuclear ribonucleoprotein SMD1 and related snRNPs [RNA processing and modification]
Probab=53.49 E-value=7 Score=35.45 Aligned_cols=16 Identities=69% Similarity=1.120 Sum_probs=9.6
Q ss_pred CCCCCCCCcccCCCCCC
Q 008865 528 GGRGGIRGRGRGWGARG 544 (550)
Q Consensus 528 ~~~~g~rgrgr~~g~~g 544 (550)
.||+.+|||||| ++||
T Consensus 94 ~~rgrgrg~Grg-~~~g 109 (109)
T KOG3428|consen 94 VGRGRGRGRGRG-RGRG 109 (109)
T ss_pred cccccccccccC-CCCC
Confidence 456666667776 5554
No 113
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=53.09 E-value=1.9e+02 Score=28.01 Aligned_cols=143 Identities=17% Similarity=0.141 Sum_probs=81.9
Q ss_pred HHHHHHhc-CCHHHHHHHhhhhhHHhccCCCcchHHHHHhhhhhcccchhHHHHHhhccccccccCcchhhh-HHHHH--
Q 008865 35 EGIIEAAK-TSLKAKQLAAQLIPRFFKFFPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSK-IVDIL-- 110 (550)
Q Consensus 35 ~~Il~~~K-gs~k~K~LAaQfI~kffk~FP~L~e~Ai~a~lDLcEDed~~IR~qaik~Lp~lck~~~e~~~r-iaDVL-- 110 (550)
+.||+..- .+.+.-.+|-++|.--.+.==--=-+++-+++.|.-|.++.||..|++-+-.++...+.++.. ..+-.
T Consensus 11 ~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s~v~~~~~~gi~~ 90 (187)
T PF12830_consen 11 KNILELCLSSDDSVRLAALQVLELILRQGLVNPKQCVPTLIALETSPNPSIRSRAYQLLKELHEKHESLVESRYSEGIRL 90 (187)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCChHHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 45666555 667777777777766655433333467788888888888889999999888888887777544 44433
Q ss_pred ---HHH-Hhhchh-HH---HHHHHHHHHHHHhh---chHHHHHHHHHhhccCCCC--CChHHHHHHHHHHHhhhcccchh
Q 008865 111 ---VQL-LAAEEI-VE---RDAVHKALMSLLRQ---DVKASLTALFKHIGSVDEP--STDEFIREKVLSFIRDKVFPLKA 177 (550)
Q Consensus 111 ---~QL-Lqsdd~-~E---~~~v~~aL~sllk~---D~k~tLt~lf~qI~~~~e~--~~eE~vREr~lkFl~~kl~~l~~ 177 (550)
.|. +..+.. .. ....-..|-++++. .-+.-+.+|++........ .++..-.-..+.|+++-|..+|-
T Consensus 91 af~~~~~l~~~~~~~~~~~~~~~l~~ly~ll~~~r~~R~~Fl~~l~k~f~~~~~~~~~~~~~~~l~~~~Fla~nLA~l~y 170 (187)
T PF12830_consen 91 AFDYQRRLSSDSRGARRGPPSAFLSRLYSLLRSNRKSRRKFLKSLLKQFDFDLTKLSSESSPSDLDFLLFLAENLATLPY 170 (187)
T ss_pred HHHHHHHhcCCccccccccchHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHhcCCC
Confidence 122 222222 11 45555556666652 2233444444444321100 11122334556677777777654
No 114
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=51.89 E-value=1e+02 Score=34.84 Aligned_cols=82 Identities=18% Similarity=0.205 Sum_probs=60.0
Q ss_pred HHHHHhhhhhcc-cchhHHHHHhhccccccccCcchhhhHHHH-HHHHHh----hchhHHHHHHHHHHHHHHhhchHHHH
Q 008865 68 RAVDAHLDLIEE-EELGVRVQAIRGLPLFCKDTPEYLSKIVDI-LVQLLA----AEEIVERDAVHKALMSLLRQDVKASL 141 (550)
Q Consensus 68 ~Ai~a~lDLcED-ed~~IR~qaik~Lp~lck~~~e~~~riaDV-L~QLLq----sdd~~E~~~v~~aL~sllk~D~k~tL 141 (550)
+-+..+++.-.| +|..+|+-|+|-|-.+|+.+|.-+-.=+.+ .+.+|. +.+.+-..++..++..+-.++|-.-+
T Consensus 329 ~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~~~I 408 (516)
T KOG2956|consen 329 EILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPLQCI 408 (516)
T ss_pred HHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCchhHH
Confidence 556677787888 899999999999999999998533322222 233443 36667777777888888888888877
Q ss_pred HHHHHhhc
Q 008865 142 TALFKHIG 149 (550)
Q Consensus 142 t~lf~qI~ 149 (550)
..+.--|.
T Consensus 409 ~~i~~~Il 416 (516)
T KOG2956|consen 409 VNISPLIL 416 (516)
T ss_pred HHHhhHHh
Confidence 77777776
No 115
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=51.28 E-value=1.5e+02 Score=36.34 Aligned_cols=126 Identities=21% Similarity=0.368 Sum_probs=75.5
Q ss_pred hhhhcccchhHHHHHhhccccccccCcchhhhHHHHHHHHHhhchhHHHH----------------------HHHHHHHH
Q 008865 74 LDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQLLAAEEIVERD----------------------AVHKALMS 131 (550)
Q Consensus 74 lDLcEDed~~IR~qaik~Lp~lck~~~e~~~riaDVL~QLLqsdd~~E~~----------------------~v~~aL~s 131 (550)
|-+..|+|..||..|+-.|-...++-|-.+..+-+-|.++|-++-..-.+ ++=.++-+
T Consensus 1013 l~~~~dpDl~VrrvaLvv~nSaahNKpslIrDllpeLLp~Ly~eTkvrkelIreVeMGPFKH~VDdgLd~RKaaFEcmyt 1092 (1233)
T KOG1824|consen 1013 LKLLRDPDLEVRRVALVVLNSAAHNKPSLIRDLLPELLPLLYSETKVRKELIREVEMGPFKHTVDDGLDLRKAAFECMYT 1092 (1233)
T ss_pred HHHHhCCchhHHHHHHHHHHHHHccCHhHHHHHHHHHHHHHHHhhhhhHhhhhhhcccCccccccchHHHHHHHHHHHHH
Confidence 44779999999999999999999998876666666677777776543333 33333444
Q ss_pred HHhh-chHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhh-hcccc-hhhhcCChHHHHHHHHHHHHhhhc-----ccch
Q 008865 132 LLRQ-DVKASLTALFKHIGSVDEPSTDEFIREKVLSFIRD-KVFPL-KAELLKPQEEMERHITDLIKKSLE-----DVTG 203 (550)
Q Consensus 132 llk~-D~k~tLt~lf~qI~~~~e~~~eE~vREr~lkFl~~-kl~~l-~~e~l~~~eE~Ee~i~~~ikKvL~-----dVt~ 203 (550)
|+.+ --+.-++.++++... .=+|.-=-|++.|+-. |+..+ |+.++ +--..+++-+++... +.-.
T Consensus 1093 LLdscld~~dit~Fl~~~~~----GL~DhydiKmlt~l~l~rLa~lcPs~Vl----qrlD~l~EpLr~t~~~k~k~~svK 1164 (1233)
T KOG1824|consen 1093 LLDSCLDRLDITEFLNHVED----GLEDHYDIKMLTFLMLARLADLCPSAVL----QRLDRLVEPLRKTCTLKVKANSVK 1164 (1233)
T ss_pred HHHhhhhhccHHHHHHHHHh----hcchhhHHHHHHHHHHHHHHhhCcHHHH----HHHHHHHHHHHHHhhcccccchHh
Confidence 4443 122333444444431 1122234567777666 77776 66665 445556666666543 3445
Q ss_pred HHHH
Q 008865 204 AEFR 207 (550)
Q Consensus 204 ~EF~ 207 (550)
+||+
T Consensus 1165 qE~e 1168 (1233)
T KOG1824|consen 1165 QEFE 1168 (1233)
T ss_pred HhHH
Confidence 5664
No 116
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=51.24 E-value=3.7e+02 Score=29.58 Aligned_cols=239 Identities=17% Similarity=0.209 Sum_probs=140.2
Q ss_pred HHHHhhhhhhccccccChhhHHHHHH-Hhc-CCHHHHHHHhhhhhHHhccCCC--cc-------hHHHHHhhhhhcccch
Q 008865 14 LYEFGERLNEAKDKSQNVKDYEGIIE-AAK-TSLKAKQLAAQLIPRFFKFFPD--LS-------SRAVDAHLDLIEEEEL 82 (550)
Q Consensus 14 LY~~~~~L~~akd~~~~~~~y~~Il~-~~K-gs~k~K~LAaQfI~kffk~FP~--L~-------e~Ai~a~lDLcEDed~ 82 (550)
+-.+-++|=.|++..--...|.--|. |.+ .+..+|.||..-|.+...+--. .. .+-+.-++|.+-.+|-
T Consensus 63 cVscLERLfkakegahlapnlmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIggedd 142 (524)
T KOG4413|consen 63 CVSCLERLFKAKEGAHLAPNLMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGEDD 142 (524)
T ss_pred HHHHHHHHHhhccchhhchhhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCcH
Confidence 56667777777776544444554443 555 7899999999999988765441 11 1223346788888888
Q ss_pred hHHHHHhhccccccccCcchhhhHHHHHHHHHhhch--------------hHHHHHHHHHHHHHHhhchHH----HHHHH
Q 008865 83 GVRVQAIRGLPLFCKDTPEYLSKIVDILVQLLAAEE--------------IVERDAVHKALMSLLRQDVKA----SLTAL 144 (550)
Q Consensus 83 ~IR~qaik~Lp~lck~~~e~~~riaDVL~QLLqsdd--------------~~E~~~v~~aL~sllk~D~k~----tLt~l 144 (550)
.|-+.||+.|..+..- -|-|.-+.-|+- ...+--|-.-++.++++.|.. +-+||
T Consensus 143 eVAkAAiesikrialf--------paaleaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGL 214 (524)
T KOG4413|consen 143 EVAKAAIESIKRIALF--------PAALEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGL 214 (524)
T ss_pred HHHHHHHHHHHHHHhc--------HHHHHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhH
Confidence 9999999998877652 233333333321 123334445566777776543 45788
Q ss_pred HHhhccCCCCCChHHHHHHHHHHHhhhcccc-hhhhcCChHHHHHHHHHHHHhhhcccchHHHHHH------HHHHhhcc
Q 008865 145 FKHIGSVDEPSTDEFIREKVLSFIRDKVFPL-KAELLKPQEEMERHITDLIKKSLEDVTGAEFRMF------MDFLKSLS 217 (550)
Q Consensus 145 f~qI~~~~e~~~eE~vREr~lkFl~~kl~~l-~~e~l~~~eE~Ee~i~~~ikKvL~dVt~~EF~l~------m~lL~sL~ 217 (550)
++++.....+.+|-.||-.||....+=+..- ..+++ .++-++++|-.+..-.+..-|..| -.+++...
T Consensus 215 ldlLeaElkGteDtLVianciElvteLaeteHgrefl-----aQeglIdlicnIIsGadsdPfekfralmgfgkffgkea 289 (524)
T KOG4413|consen 215 LDLLEAELKGTEDTLVIANCIELVTELAETEHGREFL-----AQEGLIDLICNIISGADSDPFEKFRALMGFGKFFGKEA 289 (524)
T ss_pred HHHHHHHhcCCcceeehhhHHHHHHHHHHHhhhhhhc-----chhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhcchH
Confidence 8888743333344457999998766533221 23333 356778888887765555556544 34455555
Q ss_pred ccCCCCchhHHHHHHHHHHHhhcccccCC---CCChhhHHHHHHHHHHhhhhhccCCCchhH
Q 008865 218 LFGEKAPTERMKELIGIIEGQADLDAQFN---VSDADHIDRLISCLYMALPFFLRGASGSKF 276 (550)
Q Consensus 218 ~~~~~~~~gr~qeLv~~i~eqa~Ld~~f~---~sD~d~idRli~cl~~Alp~fs~~v~st~f 276 (550)
+|+ +++ ++.++.+.- -.|..|. ..||+.+.-.|. |+-.+.+++.+..+
T Consensus 290 imd-vse----eaicealii--aidgsfEmiEmnDpdaieaAiD----alGilGSnteGadl 340 (524)
T KOG4413|consen 290 IMD-VSE----EAICEALII--AIDGSFEMIEMNDPDAIEAAID----ALGILGSNTEGADL 340 (524)
T ss_pred Hhh-cCH----HHHHHHHHH--HHHhhHHhhhcCCchHHHHHHH----HHHhccCCcchhHH
Confidence 553 233 223322211 1223332 467877776666 66666666665544
No 117
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=51.00 E-value=56 Score=35.99 Aligned_cols=89 Identities=15% Similarity=0.019 Sum_probs=64.8
Q ss_pred cChhhHHHHHHHhc-CCHHHHHHHhhhhhHHhccCCCcchHHHHHhhhhhcccchhHHHHHhhccccccccCcchhhhHH
Q 008865 29 QNVKDYEGIIEAAK-TSLKAKQLAAQLIPRFFKFFPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIV 107 (550)
Q Consensus 29 ~~~~~y~~Il~~~K-gs~k~K~LAaQfI~kffk~FP~L~e~Ai~a~lDLcEDed~~IR~qaik~Lp~lck~~~e~~~ria 107 (550)
+.......++.+.+ .++.....+..-... + ..++...++.+.+|+|..||.+|++.|-.++.. +.++.
T Consensus 114 ~~~~a~~~L~~~L~~~~p~vR~aal~al~~--r-----~~~~~~~L~~~L~d~d~~Vra~A~raLG~l~~~--~a~~~-- 182 (410)
T TIGR02270 114 GGRQAEPWLEPLLAASEPPGRAIGLAALGA--H-----RHDPGPALEAALTHEDALVRAAALRALGELPRR--LSEST-- 182 (410)
T ss_pred CchHHHHHHHHHhcCCChHHHHHHHHHHHh--h-----ccChHHHHHHHhcCCCHHHHHHHHHHHHhhccc--cchHH--
Confidence 45556677788777 667777777655554 1 123455666667799999999999999998864 44444
Q ss_pred HHHHHHHhhchhHHHHHHHHHHH
Q 008865 108 DILVQLLAAEEIVERDAVHKALM 130 (550)
Q Consensus 108 DVL~QLLqsdd~~E~~~v~~aL~ 130 (550)
|..++++++++++..+-.+|.
T Consensus 183 --L~~al~d~~~~VR~aA~~al~ 203 (410)
T TIGR02270 183 --LRLYLRDSDPEVRFAALEAGL 203 (410)
T ss_pred --HHHHHcCCCHHHHHHHHHHHH
Confidence 567799999999988877773
No 118
>PTZ00034 40S ribosomal protein S10; Provisional
Probab=50.15 E-value=11 Score=35.15 Aligned_cols=25 Identities=20% Similarity=0.574 Sum_probs=15.8
Q ss_pred hccHHHH--hhhhhcCCCCccCCCcccccccc
Q 008865 446 CNNILAM--SKPLHSKTPSFIGDKSVNLSWKE 475 (550)
Q Consensus 446 ~~NI~~l--i~~l~~~pPsf~~~~~i~lSW~~ 475 (550)
+.|+.++ ++.|.+. -|. .-++||..
T Consensus 38 vpNL~Vik~mqSL~Sr--g~V---ke~f~Wrh 64 (124)
T PTZ00034 38 VPNLHVMMLMRSLKSR--GLV---KEQFAWQH 64 (124)
T ss_pred CccHHHHHHHHccccC--Cce---EEEEeeEE
Confidence 4555444 4666665 444 77899987
No 119
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=49.92 E-value=2.2e+02 Score=34.66 Aligned_cols=88 Identities=17% Similarity=0.298 Sum_probs=68.1
Q ss_pred cChhhHHHHHHHhc-CCHHHHHHHhhhhhHHhc-cCC---CcchHHHHHhhhhhcccchhHHHHHhhccccccccC----
Q 008865 29 QNVKDYEGIIEAAK-TSLKAKQLAAQLIPRFFK-FFP---DLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDT---- 99 (550)
Q Consensus 29 ~~~~~y~~Il~~~K-gs~k~K~LAaQfI~kffk-~FP---~L~e~Ai~a~lDLcEDed~~IR~qaik~Lp~lck~~---- 99 (550)
.+.+-|++-|.... .-...|--|=+.+.+.|+ +.| ..++..+...+|..+|+|+=|=..||+++..+|--.
T Consensus 724 ~~~e~~qeai~sl~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~e~i 803 (982)
T KOG4653|consen 724 VDIEPLQEAISSLHDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYPEDI 803 (982)
T ss_pred ccHHHHHHHHHHhcCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcchhh
Confidence 56777999898888 557788888888888886 222 346788999999999999999999999999998533
Q ss_pred ----------------cchhhhHHHHHHHHHhh
Q 008865 100 ----------------PEYLSKIVDILVQLLAA 116 (550)
Q Consensus 100 ----------------~e~~~riaDVL~QLLqs 116 (550)
++++=||..+++++++.
T Consensus 804 l~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa 836 (982)
T KOG4653|consen 804 LPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQA 836 (982)
T ss_pred HHHHHHHHHhcccCCCccceehHHHHHHHHHHH
Confidence 34555666666666665
No 120
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=49.26 E-value=57 Score=28.55 Aligned_cols=82 Identities=16% Similarity=0.247 Sum_probs=53.1
Q ss_pred hhHHHHHHHhc-CCHHHHHHHhhhhhHHhcc---CCCcchHHHHHhhhhhcccchhHHHHHhhccccccccCcchhhhHH
Q 008865 32 KDYEGIIEAAK-TSLKAKQLAAQLIPRFFKF---FPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIV 107 (550)
Q Consensus 32 ~~y~~Il~~~K-gs~k~K~LAaQfI~kffk~---FP~L~e~Ai~a~lDLcEDed~~IR~qaik~Lp~lck~~~e~~~ria 107 (550)
+.|+.++.-.. +-+.++--+=..+.+.++. -....+..++-++...+|+|+=|=..||++|..+|.-.|+ ++.
T Consensus 3 ~~~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~---~vl 79 (92)
T PF10363_consen 3 ETLQEALSDLNDPLPPVRAHGLVLLRKLIESKSEPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPD---EVL 79 (92)
T ss_pred HHHHHHHHHccCCCcchHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChH---HHH
Confidence 34555555444 3333443333333333332 2244556778888999999999999999999999986653 577
Q ss_pred HHHHHHHhh
Q 008865 108 DILVQLLAA 116 (550)
Q Consensus 108 DVL~QLLqs 116 (550)
+.|++-...
T Consensus 80 ~~L~~~y~~ 88 (92)
T PF10363_consen 80 PILLDEYAD 88 (92)
T ss_pred HHHHHHHhC
Confidence 777765544
No 121
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=48.46 E-value=3.2e+02 Score=32.41 Aligned_cols=258 Identities=16% Similarity=0.209 Sum_probs=134.2
Q ss_pred HHHHHhhhhhcccchhHHHHHhhccccc------cccCcchhhhHHHHHHHHHhhchhHHHHHHHHHHHHHHhhchHHHH
Q 008865 68 RAVDAHLDLIEEEELGVRVQAIRGLPLF------CKDTPEYLSKIVDILVQLLAAEEIVERDAVHKALMSLLRQDVKASL 141 (550)
Q Consensus 68 ~Ai~a~lDLcEDed~~IR~qaik~Lp~l------ck~~~e~~~riaDVL~QLLqsdd~~E~~~v~~aL~sllk~D~k~tL 141 (550)
.-+...|-+...-.++||++|.+-...+ |-+. +.+.+..-||+.-|..|+|..+-.+-+|+-++++..--..+
T Consensus 604 ~ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~-~~l~klg~iLyE~lge~ypEvLgsil~Ai~~I~sv~~~~~m 682 (975)
T COG5181 604 MIVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGET-KELAKLGNILYENLGEDYPEVLGSILKAICSIYSVHRFRSM 682 (975)
T ss_pred HHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchH-HHHHHHhHHHHHhcCcccHHHHHHHHHHHHHHhhhhccccc
Confidence 3456677777777788999887644333 4444 45888999999999999999999999999988876221111
Q ss_pred HHHHHhhccCCCC---CChHHHHHHHHHHHhhhcccchhhhcC-----------------ChHHHHHHHHHHHHhhhccc
Q 008865 142 TALFKHIGSVDEP---STDEFIREKVLSFIRDKVFPLKAELLK-----------------PQEEMERHITDLIKKSLEDV 201 (550)
Q Consensus 142 t~lf~qI~~~~e~---~~eE~vREr~lkFl~~kl~~l~~e~l~-----------------~~eE~Ee~i~~~ikKvL~dV 201 (550)
.-=.++|.+.=.| +-.+.+-+..|+|+-. +....+++.. |++|+.+...+-.--+-..|
T Consensus 683 qpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~-I~~~~peyi~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is~ai 761 (975)
T COG5181 683 QPPISGILPSLTPILRNKHQKVVANTIALVGT-ICMNSPEYIGVREWMRICFELVDSLKSWNKEIRRNATETFGCISRAI 761 (975)
T ss_pred CCchhhccccccHhhhhhhHHHhhhHHHHHHH-HHhcCcccCCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHHhhc
Confidence 1112222211000 1223344555666543 2222333332 33333333222211111112
Q ss_pred chHHHHHHHHHHhhccccCCCCchhHHHHHH-----HHHHHhhcccccCCC-----CChhhHHHHHH-HHHHhhhhh-cc
Q 008865 202 TGAEFRMFMDFLKSLSLFGEKAPTERMKELI-----GIIEGQADLDAQFNV-----SDADHIDRLIS-CLYMALPFF-LR 269 (550)
Q Consensus 202 t~~EF~l~m~lL~sL~~~~~~~~~gr~qeLv-----~~i~eqa~Ld~~f~~-----sD~d~idRli~-cl~~Alp~f-s~ 269 (550)
-+.| .+--+|+.|+. ++|+|... .++.|- ..+|++ +|-++=+-..+ =+-.|+-|| ..
T Consensus 762 GPqd--vL~~LlnnLkv------qeRq~RvctsvaI~iVae~---cgpfsVlP~lm~dY~TPe~nVQnGvLkam~fmFey 830 (975)
T COG5181 762 GPQD--VLDILLNNLKV------QERQQRVCTSVAISIVAEY---CGPFSVLPTLMSDYETPEANVQNGVLKAMCFMFEY 830 (975)
T ss_pred CHHH--HHHHHHhcchH------HHHHhhhhhhhhhhhhHhh---cCchhhHHHHHhcccCchhHHHHhHHHHHHHHHHH
Confidence 2222 35556666644 35655433 334443 344442 22222222222 222233333 11
Q ss_pred CCC-chhHHHHHHhhhcccCCCC--Ch---h--hhhhHHHHHHHhCCCCCchhhh-hhhHHHHHHHHhhCCCCCCCCCcc
Q 008865 270 GAS-GSKFLNYLNKHIIPVFDKL--PE---E--RKLDLLKALAEISPYTTPQDSR-QILPSVAVLLKKYMPLRKTGGEEM 340 (550)
Q Consensus 270 ~v~-st~f~~y~~~~IlP~l~~L--~~---~--~kl~lLK~lAE~s~~~~~~~a~-~~l~~i~~~L~~~mP~~~~~~~~l 340 (550)
-.. |-+|+. .|+|.+.+. +. . .-+.+.+.|+.-|+-++.+|+- -+++.++..+++-. |-.
T Consensus 831 ig~~s~dYvy----~itPlleDAltDrD~vhRqta~nvI~Hl~Lnc~gtg~eda~IHLlNllwpNIle~s-------Phv 899 (975)
T COG5181 831 IGQASLDYVY----SITPLLEDALTDRDPVHRQTAMNVIRHLVLNCPGTGDEDAAIHLLNLLWPNILEPS-------PHV 899 (975)
T ss_pred HHHHHHHHHH----HhhHHHHhhhcccchHHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHhhhhccCCC-------cHH
Confidence 111 222221 477877765 22 2 3569999999999988888843 34455555444433 446
Q ss_pred chHHHHHHH
Q 008865 341 NFTYVECLL 349 (550)
Q Consensus 341 ~fS~vEcLL 349 (550)
.-+..||+=
T Consensus 900 i~~~~Eg~e 908 (975)
T COG5181 900 IQSFDEGME 908 (975)
T ss_pred HHHHHHHHH
Confidence 778888863
No 122
>KOG4501 consensus Transcription coactivator complex, P100 component [Transcription]
Probab=48.23 E-value=15 Score=41.64 Aligned_cols=19 Identities=37% Similarity=0.564 Sum_probs=11.7
Q ss_pred CCCCCCcccCCCCCCCCCC
Q 008865 530 RGGIRGRGRGWGARGRGRG 548 (550)
Q Consensus 530 ~~g~rgrgr~~g~~gr~~~ 548 (550)
++++|||||+..|.|-++.
T Consensus 671 ~~t~r~Rg~kea~k~traN 689 (707)
T KOG4501|consen 671 NGTGRGRGRKEAGKGTRAN 689 (707)
T ss_pred cccccccccccccCccccc
Confidence 7777888876544444443
No 123
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=48.07 E-value=2.7e+02 Score=28.73 Aligned_cols=103 Identities=23% Similarity=0.221 Sum_probs=68.8
Q ss_pred hhHHHHHHHhcC-CHHHHHHHhhhhhHHhccCCCcchHHHHHhhhhhcccchhHHHHHhhccccccccCcchhhhHHHHH
Q 008865 32 KDYEGIIEAAKT-SLKAKQLAAQLIPRFFKFFPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDIL 110 (550)
Q Consensus 32 ~~y~~Il~~~Kg-s~k~K~LAaQfI~kffk~FP~L~e~Ai~a~lDLcEDed~~IR~qaik~Lp~lck~~~e~~~riaDVL 110 (550)
+.-..++..... +.-.+.-|+.-+ ..+ -.++|+..+.++|.|++..||.+|+-.|-.+-- +..++.|
T Consensus 43 ~~~~~~~~~l~~~~~~vr~~aa~~l----~~~--~~~~av~~l~~~l~d~~~~vr~~a~~aLg~~~~------~~a~~~l 110 (335)
T COG1413 43 EAADELLKLLEDEDLLVRLSAAVAL----GEL--GSEEAVPLLRELLSDEDPRVRDAAADALGELGD------PEAVPPL 110 (335)
T ss_pred hhHHHHHHHHcCCCHHHHHHHHHHH----hhh--chHHHHHHHHHHhcCCCHHHHHHHHHHHHccCC------hhHHHHH
Confidence 345555555553 445555555442 222 247899999999999999999999997666542 3678899
Q ss_pred HHHHhh-chhHHHHHHHHHHHHHHhhchHHHHHHHHHhhc
Q 008865 111 VQLLAA-EEIVERDAVHKALMSLLRQDVKASLTALFKHIG 149 (550)
Q Consensus 111 ~QLLqs-dd~~E~~~v~~aL~sllk~D~k~tLt~lf~qI~ 149 (550)
+.+|++ ++...+..+-.+| .+......+..++..+.
T Consensus 111 i~~l~~d~~~~vR~~aa~aL---~~~~~~~a~~~l~~~l~ 147 (335)
T COG1413 111 VELLENDENEGVRAAAARAL---GKLGDERALDPLLEALQ 147 (335)
T ss_pred HHHHHcCCcHhHHHHHHHHH---HhcCchhhhHHHHHHhc
Confidence 999995 6666666555554 45545555777777765
No 124
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=47.92 E-value=1.5e+02 Score=34.58 Aligned_cols=118 Identities=19% Similarity=0.232 Sum_probs=76.0
Q ss_pred HHHhhhhhHHhccC--CCcchHHHHHhhhhhcccchhHHHHHhhccccccccCcchhhhHHHHHHHHHhhchhHHHHHHH
Q 008865 49 QLAAQLIPRFFKFF--PDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQLLAAEEIVERDAVH 126 (550)
Q Consensus 49 ~LAaQfI~kffk~F--P~L~e~Ai~a~lDLcEDed~~IR~qaik~Lp~lck~~~e~~~riaDVL~QLLqsdd~~E~~~v~ 126 (550)
.=+|..|-+|--.. |++-.+++.++--+.-.--+..|-.|+|-|-+++...|+-+.- +.-=+.=|.+|+ -++...
T Consensus 282 lE~Ar~v~~~~~~nv~~~~~~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv~v-cN~evEsLIsd~--Nr~Ist 358 (898)
T COG5240 282 LEAARAVCALSEENVGSQFVDQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKVSV-CNKEVESLISDE--NRTIST 358 (898)
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCceeee-cChhHHHHhhcc--cccchH
Confidence 33455555544443 6666677777777777777778999999998888877764331 111122344443 356667
Q ss_pred HHHHHHHhhchHHHHHHHHHhhccCCCCCCh-------HHHHHHHHHHHh
Q 008865 127 KALMSLLRQDVKASLTALFKHIGSVDEPSTD-------EFIREKVLSFIR 169 (550)
Q Consensus 127 ~aL~sllk~D~k~tLt~lf~qI~~~~e~~~e-------E~vREr~lkFl~ 169 (550)
=|+-+|||.....++..|.++|.+.-....| |.+|..++.|=+
T Consensus 359 yAITtLLKTGt~e~idrLv~~I~sfvhD~SD~FKiI~ida~rsLsl~Fp~ 408 (898)
T COG5240 359 YAITTLLKTGTEETIDRLVNLIPSFVHDMSDGFKIIAIDALRSLSLLFPS 408 (898)
T ss_pred HHHHHHHHcCchhhHHHHHHHHHHHHHhhccCceEEeHHHHHHHHhhCcH
Confidence 7889999999999999998888654222333 346777766644
No 125
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=47.84 E-value=39 Score=23.15 Aligned_cols=28 Identities=29% Similarity=0.322 Sum_probs=23.2
Q ss_pred HHHHHHHHhhchhHHHHHHHHHHHHHHh
Q 008865 107 VDILVQLLAAEEIVERDAVHKALMSLLR 134 (550)
Q Consensus 107 aDVL~QLLqsdd~~E~~~v~~aL~sllk 134 (550)
...|.|+|+++++..+.++-.+|..+.+
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 4578899999999999999999888765
No 126
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=47.52 E-value=99 Score=36.72 Aligned_cols=111 Identities=16% Similarity=0.235 Sum_probs=71.4
Q ss_pred hHHHHHHHhc-CCHHHHHHHhhhhhHHhccCCCcchH----HHHHhhhhhcccchhHHHHHhhccccccccCcchhhhHH
Q 008865 33 DYEGIIEAAK-TSLKAKQLAAQLIPRFFKFFPDLSSR----AVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIV 107 (550)
Q Consensus 33 ~y~~Il~~~K-gs~k~K~LAaQfI~kffk~FP~L~e~----Ai~a~lDLcEDed~~IR~qaik~Lp~lck~~~e~~~ria 107 (550)
-|.-+|.+.. .+.++.-=..|.|.+--..--+.-+. -+.+++-=.-|.++.||+||+..|..+=-+..+===+|+
T Consensus 86 ~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~dee~~v~ 165 (892)
T KOG2025|consen 86 TFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKDEECPVV 165 (892)
T ss_pred HHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCCCcccHH
Confidence 3667777777 67777777888888887644333333 444556667799999999999999887644333233567
Q ss_pred HHHHHHHhhchhHHHHHHHHHHHHHHhhchHHHHHHHHHh
Q 008865 108 DILVQLLAAEEIVERDAVHKALMSLLRQDVKASLTALFKH 147 (550)
Q Consensus 108 DVL~QLLqsdd~~E~~~v~~aL~sllk~D~k~tLt~lf~q 147 (550)
-+|.-++|-|-+.|+ +.|.++-+..|+. |+.-+.--
T Consensus 166 n~l~~liqnDpS~EV---RRaaLsnI~vdns-Tlp~IveR 201 (892)
T KOG2025|consen 166 NLLKDLIQNDPSDEV---RRAALSNISVDNS-TLPCIVER 201 (892)
T ss_pred HHHHHHHhcCCcHHH---HHHHHHhhccCcc-cchhHHHH
Confidence 777777777766663 4444555544433 44444333
No 127
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=47.32 E-value=2.6e+02 Score=28.07 Aligned_cols=64 Identities=14% Similarity=0.205 Sum_probs=50.6
Q ss_pred hhcccchhHHHHHhhccccccccCcchhhhHHHHHHHHHhhchhHHHHHHHHHHHHHHhhchHH
Q 008865 76 LIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQLLAAEEIVERDAVHKALMSLLRQDVKA 139 (550)
Q Consensus 76 LcEDed~~IR~qaik~Lp~lck~~~e~~~riaDVL~QLLqsdd~~E~~~v~~aL~sllk~D~k~ 139 (550)
+-++.++.+....++.||.+|+.+.+.++-+..+|..|..+....=..+...-+..+++.+++.
T Consensus 9 l~~~~~~~~~~~~L~~L~~l~~~~~~~~~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~ 72 (234)
T PF12530_consen 9 LGKISDPELQLPLLEALPSLACHKNVCVPPVLQTLVSLVEQGSLELRYVALRLLTLLWKANDRH 72 (234)
T ss_pred hcCCCChHHHHHHHHHHHHHhccCccchhHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchH
Confidence 7788999999999999999999875667779999988877766444456666667777777765
No 128
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=47.03 E-value=66 Score=36.65 Aligned_cols=100 Identities=17% Similarity=0.149 Sum_probs=74.0
Q ss_pred HHHHHhcCCHHHHHHHhhhhhHHhccCCCcchHHHH-----Hhhhhhcccch-hHHHHHhhccccccccCc-----chhh
Q 008865 36 GIIEAAKTSLKAKQLAAQLIPRFFKFFPDLSSRAVD-----AHLDLIEEEEL-GVRVQAIRGLPLFCKDTP-----EYLS 104 (550)
Q Consensus 36 ~Il~~~Kgs~k~K~LAaQfI~kffk~FP~L~e~Ai~-----a~lDLcEDed~-~IR~qaik~Lp~lck~~~-----e~~~ 104 (550)
.|.-...++...+.=|..-+.....+=|.+.+-.++ .++.+....+. .+.+++.-.|..||+.-. +.++
T Consensus 157 fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~ 236 (514)
T KOG0166|consen 157 FIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVA 236 (514)
T ss_pred HHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHH
Confidence 344445577777777777777777777887776554 47777777775 567788888888888763 5677
Q ss_pred hHHHHHHHHHhhchhHHHHHHHHHHHHHHhh
Q 008865 105 KIVDILVQLLAAEEIVERDAVHKALMSLLRQ 135 (550)
Q Consensus 105 riaDVL~QLLqsdd~~E~~~v~~aL~sllk~ 135 (550)
.+-.+|..||.+.|+..+.-+-+||..|-.-
T Consensus 237 ~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg 267 (514)
T KOG0166|consen 237 PILPALLRLLHSTDEEVLTDACWALSYLTDG 267 (514)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHhcC
Confidence 8888888888888888887777877766533
No 129
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=46.66 E-value=1.8e+02 Score=34.79 Aligned_cols=48 Identities=33% Similarity=0.447 Sum_probs=31.4
Q ss_pred CCHHHHHHHhhhhhHHhccCC----CcchHHHHH--------hhhhhcccchhHHHHHhhccc
Q 008865 43 TSLKAKQLAAQLIPRFFKFFP----DLSSRAVDA--------HLDLIEEEELGVRVQAIRGLP 93 (550)
Q Consensus 43 gs~k~K~LAaQfI~kffk~FP----~L~e~Ai~a--------~lDLcEDed~~IR~qaik~Lp 93 (550)
....+..=||.. ||..|| ++-.+++|. ++||.+|+-+.||-.||+++-
T Consensus 186 ~Ns~VrsnAa~l---f~~~fP~~dpd~~~e~mD~i~~kQf~~l~~LL~d~~p~VRS~a~~gv~ 245 (1005)
T KOG1949|consen 186 RNSEVRSNAALL---FVEAFPIRDPDLHAEEMDSIIQKQFEELYSLLEDPYPMVRSTAILGVC 245 (1005)
T ss_pred CchhhhhhHHHH---HHHhccCCCCCccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHH
Confidence 344444445544 555565 555555554 568999999999999988753
No 130
>PF03715 Noc2: Noc2p family; InterPro: IPR005343 This is a small family of mainly hypothetical proteins of unknown function.
Probab=46.13 E-value=99 Score=32.63 Aligned_cols=157 Identities=21% Similarity=0.331 Sum_probs=85.5
Q ss_pred hHHHHHhhccccccccCcchhhhHHHHHHHHHhhchhHHHHHHHHH------HHHHHhhchHHHHHHHHHhhccCCCCCC
Q 008865 83 GVRVQAIRGLPLFCKDTPEYLSKIVDILVQLLAAEEIVERDAVHKA------LMSLLRQDVKASLTALFKHIGSVDEPST 156 (550)
Q Consensus 83 ~IR~qaik~Lp~lck~~~e~~~riaDVL~QLLqsdd~~E~~~v~~a------L~sllk~D~k~tLt~lf~qI~~~~e~~~ 156 (550)
..|..-|+.|-.+|..+.-|+| ++-.|+.+|.+-+..... +.+ +...++..+.-.=+.-|
T Consensus 129 Plrlh~ir~L~~L~~~t~~fIP-l~~~lleiL~~~~~~~~~--k~~~~kp~d~~~~Lk~~k~~l~t~~~----------- 194 (299)
T PF03715_consen 129 PLRLHCIRSLNRLSQSTGTFIP-LAPYLLEILESSEFNKKP--KKSSMKPLDFECLLKVSKSQLRTRQF----------- 194 (299)
T ss_pred chHHHHHHHHHHHHHhcCceEe-cHHHHHHHHhChhhcCCC--CCCCCCCcCHHHHhhccHHHhccHHH-----------
Confidence 4789999999999988887765 344444444443211110 011 12223322221111111
Q ss_pred hHHHHHHHHHHHhhhcccchhhhcCChHHHHHHHHHHHHhhhcccchHHHHHHHHHHhhccccCCCCchhHHHHHHHHHH
Q 008865 157 DEFIREKVLSFIRDKVFPLKAELLKPQEEMERHITDLIKKSLEDVTGAEFRMFMDFLKSLSLFGEKAPTERMKELIGIIE 236 (550)
Q Consensus 157 eE~vREr~lkFl~~kl~~l~~e~l~~~eE~Ee~i~~~ikKvL~dVt~~EF~l~m~lL~sL~~~~~~~~~gr~qeLv~~i~ 236 (550)
-|.+.+.++.-|.+.+......+-=| |.---++..+||.+.......|..- ++.|++-+.
T Consensus 195 ~d~v~e~~~~LL~e~la~~s~sIaFP--El~~pii~~LKr~~K~~k~~~~~~~------------------ik~Li~kie 254 (299)
T PF03715_consen 195 QDGVIEEVYELLLEYLAIYSYSIAFP--ELALPIIVQLKRFLKSCKNAKFKRQ------------------IKQLIDKIE 254 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCcch--hhHHHHHHHHHHHHHHcccHHHHHH------------------HHHHHHHHH
Confidence 12344555555555554443333323 6666677777777666655555322 345555555
Q ss_pred Hhhc------ccccCCCCChhhHHHHHHHHHHhhhhhccCCCchhHHHHHHh
Q 008865 237 GQAD------LDAQFNVSDADHIDRLISCLYMALPFFLRGASGSKFLNYLNK 282 (550)
Q Consensus 237 eqa~------Ld~~f~~sD~d~idRli~cl~~Alp~fs~~v~st~f~~y~~~ 282 (550)
++++ -.-.|.+.|.+.|+.+.+.+ ...+|++-.|+..
T Consensus 255 e~~~~I~~kR~~v~f~p~d~~~V~~fe~~~---------~~~~tPl~~~~~~ 297 (299)
T PF03715_consen 255 ENSKFIESKRSKVDFSPKDQAQVEAFESEL---------KWEGTPLGKYYAS 297 (299)
T ss_pred HHHHHHHHHHccCCCCCCCHHHHHHHHHhc---------ccCCCCHHHHHHh
Confidence 5533 23458899999999888754 2456777777753
No 131
>PRK05686 fliG flagellar motor switch protein G; Validated
Probab=45.91 E-value=2.4e+02 Score=30.04 Aligned_cols=156 Identities=16% Similarity=0.246 Sum_probs=82.8
Q ss_pred HHHHH-HHHhhhhhhccccc-cChhhHHHHHHHhcCCHHHHHHHhhhhhH-HhccCCCcchHHHHHhhhhhcccchhH--
Q 008865 10 QIEKL-YEFGERLNEAKDKS-QNVKDYEGIIEAAKTSLKAKQLAAQLIPR-FFKFFPDLSSRAVDAHLDLIEEEELGV-- 84 (550)
Q Consensus 10 ~ie~L-Y~~~~~L~~akd~~-~~~~~y~~Il~~~Kgs~k~K~LAaQfI~k-ffk~FP~L~e~Ai~a~lDLcEDed~~I-- 84 (550)
.++.+ .++++.+....... ...+.-..||..+-|..+++.+-..+-.. --.-|..|..---..+..+..++++++
T Consensus 59 ~~~~vL~ef~~~~~~~~~~~~gg~~~~~~iL~~~l~~~~a~~il~~i~~~~~~~~fe~L~~ld~~~l~~lL~~EhpqtiA 138 (339)
T PRK05686 59 QVEAVLEEFEDEFEAGAYILMGGIDYARSLLEKALGEEKADSILERILESLGTSGFDFLRKMDPQQLANFIRNEHPQTIA 138 (339)
T ss_pred HHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHcCHHHHHHHHHHHhccccCchHHHHhcCCHHHHHHHHHhcCHHHHH
Confidence 34333 55665665433222 45555677888777777766655443221 002444555444455566777888773
Q ss_pred ----------------------HHHHhhccccccccCcchhhhHHHHHHHHHhh---chhHHHHHHHHHHHHHHhhchHH
Q 008865 85 ----------------------RVQAIRGLPLFCKDTPEYLSKIVDILVQLLAA---EEIVERDAVHKALMSLLRQDVKA 139 (550)
Q Consensus 85 ----------------------R~qaik~Lp~lck~~~e~~~riaDVL~QLLqs---dd~~E~~~v~~aL~sllk~D~k~ 139 (550)
|..-+..+-.+-.=+|+.+..|.++|-+.+.. .......-+ +.+..+|..=++.
T Consensus 139 ~iLs~l~~~~aa~vL~~l~~~~~~~v~~ria~l~~v~~~~~~~i~~~L~~~l~~~~~~~~~~~~g~-~~~a~Iln~~~~~ 217 (339)
T PRK05686 139 LILSYLKPDQAAEILSLLPEELRADVMMRIATLEGVSPEALKEVEEVLEKKLSSMANADRTKMGGV-KTVAEILNNLDRQ 217 (339)
T ss_pred HHHhCCCHHHHHHHHHhCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHhhcccccccccCcH-HHHHHHHhcCCch
Confidence 33333333344444555666666666666643 122222222 2345666666666
Q ss_pred HHHHHHHhhccCCCCCChHHHHHHHHHH
Q 008865 140 SLTALFKHIGSVDEPSTDEFIREKVLSF 167 (550)
Q Consensus 140 tLt~lf~qI~~~~e~~~eE~vREr~lkF 167 (550)
+-..++..|.. ..|.--+.+|++++.|
T Consensus 218 ~~~~il~~L~~-~d~~~a~~Ir~~mF~F 244 (339)
T PRK05686 218 TEKTILESLEE-EDPELAEKIKDLMFVF 244 (339)
T ss_pred HHHHHHHHHHh-hCHHHHHHHHHHhcCH
Confidence 77777777762 1222223467777766
No 132
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=45.88 E-value=1.3e+02 Score=27.77 Aligned_cols=70 Identities=13% Similarity=0.304 Sum_probs=42.5
Q ss_pred hHHHHHHHHH-hhchhHHHHHHHHHHHHHHhhchHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhhhcccchhhhcCCh
Q 008865 105 KIVDILVQLL-AAEEIVERDAVHKALMSLLRQDVKASLTALFKHIGSVDEPSTDEFIREKVLSFIRDKVFPLKAELLKPQ 183 (550)
Q Consensus 105 riaDVL~QLL-qsdd~~E~~~v~~aL~sllk~D~k~tLt~lf~qI~~~~e~~~eE~vREr~lkFl~~kl~~l~~e~l~~~ 183 (550)
++.-+|.++| .++|+..+.++=+=|-.+++..|.| ..+..++. .++++++.+.. +.
T Consensus 43 ~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~g--r~ii~~lg----------~K~~vM~Lm~h-----------~d 99 (119)
T PF11698_consen 43 ELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNG--RNIIEKLG----------AKERVMELMNH-----------ED 99 (119)
T ss_dssp HHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGG--HHHHHHHS----------HHHHHHHHTS------------SS
T ss_pred HHHHHHHHHHccCCCcceeehhhcchHHHHHHChhH--HHHHHhcC----------hHHHHHHHhcC-----------CC
Confidence 3445566666 5578888888888888888887775 44455544 67777765442 34
Q ss_pred HHHHHHHHHHHHhh
Q 008865 184 EEMERHITDLIKKS 197 (550)
Q Consensus 184 eE~Ee~i~~~ikKv 197 (550)
.|+...-+-.+.|.
T Consensus 100 ~eVr~eAL~avQkl 113 (119)
T PF11698_consen 100 PEVRYEALLAVQKL 113 (119)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 55555555444443
No 133
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=44.99 E-value=5.9e+02 Score=31.47 Aligned_cols=117 Identities=15% Similarity=0.144 Sum_probs=67.4
Q ss_pred HHHHHHHHHhhcccccCCCCChhhHHHHHHHHHHhhhhhccCCCchhHHHHHHhhhcccCCCCChhhhhhHHHHHHHhCC
Q 008865 229 KELIGIIEGQADLDAQFNVSDADHIDRLISCLYMALPFFLRGASGSKFLNYLNKHIIPVFDKLPEERKLDLLKALAEISP 308 (550)
Q Consensus 229 qeLv~~i~eqa~Ld~~f~~sD~d~idRli~cl~~Alp~fs~~v~st~f~~y~~~~IlP~l~~L~~~~kl~lLK~lAE~s~ 308 (550)
|.|+..+...+.=+.+.+.+|.|-==..+-|++..-.+..+-......+.++--.++|+.+.+-.....++-.-+-+++.
T Consensus 588 q~La~~F~k~l~~~~~~~~~~ddk~iaA~GiL~Ti~Til~s~e~~p~vl~~le~~~l~vi~~iL~~~i~dfyeE~~ei~~ 667 (1010)
T KOG1991|consen 588 QNLAETFLKVLQTSEDEDESDDDKAIAASGILRTISTILLSLENHPEVLKQLEPIVLPVIGFILKNDITDFYEELLEIVS 667 (1010)
T ss_pred HHHHHHHHHHHhccCCCCccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHh
Confidence 33444444333223344444443222333466655555544444455788888888887766544556677777777776
Q ss_pred CCCchh------hhhhhHHHHHHHHhhCCCCCCCCCccchHHHHHHHHHHHHhh
Q 008865 309 YTTPQD------SRQILPSVAVLLKKYMPLRKTGGEEMNFTYVECLLYTFHHLA 356 (550)
Q Consensus 309 ~~~~~~------a~~~l~~i~~~L~~~mP~~~~~~~~l~fS~vEcLL~afh~L~ 356 (550)
+||-.- .=++++.|++.+.++- +-|.+-.+.+||+--
T Consensus 668 ~~t~~~~~Isp~mW~ll~li~e~~~~~~-----------~dyf~d~~~~l~N~v 710 (1010)
T KOG1991|consen 668 SLTFLSKEISPIMWGLLELILEVFQDDG-----------IDYFTDMMPALHNYV 710 (1010)
T ss_pred hhhhhhcccCHHHHHHHHHHHHHHhhhh-----------HHHHHHHHHHHhhhe
Confidence 665322 2345666666665432 778899999999543
No 134
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=44.22 E-value=5.2e+02 Score=31.14 Aligned_cols=266 Identities=17% Similarity=0.248 Sum_probs=140.6
Q ss_pred hhhHHHHHHHhcCCHHHHHHHhhhhhHHhcc-----CCCcchHH-HHHhhhhhcccchhHHHHHhhc----cccccccCc
Q 008865 31 VKDYEGIIEAAKTSLKAKQLAAQLIPRFFKF-----FPDLSSRA-VDAHLDLIEEEELGVRVQAIRG----LPLFCKDTP 100 (550)
Q Consensus 31 ~~~y~~Il~~~Kgs~k~K~LAaQfI~kffk~-----FP~L~e~A-i~a~lDLcEDed~~IR~qaik~----Lp~lck~~~ 100 (550)
..-|..++.-.... .-..+|+-+.+|=.+ ||+....- +-++-.||.|...-||...--. .|.+-|++.
T Consensus 357 ~~~~~~l~~~~~~e--~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~k~~t 434 (759)
T KOG0211|consen 357 VPPVSNLLKDEEWE--VRYAIAKKVQKLACYLNASCYPNIPDSSILPEVQVLVLDNALHVRSALASVITGLSPILPKERT 434 (759)
T ss_pred hhhHHHHhcchhhh--hhHHhhcchHHHhhhcCcccccccchhhhhHHHHHHHhcccchHHHHHhccccccCccCCcCcC
Confidence 44444444433322 222344444444332 55665544 4899999999999999876543 355556543
Q ss_pred chhhhHHHHHHHHHhhchhHHHHHHHHHHHHHHhh-c---hHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhhhcccch
Q 008865 101 EYLSKIVDILVQLLAAEEIVERDAVHKALMSLLRQ-D---VKASLTALFKHIGSVDEPSTDEFIREKVLSFIRDKVFPLK 176 (550)
Q Consensus 101 e~~~riaDVL~QLLqsdd~~E~~~v~~aL~sllk~-D---~k~tLt~lf~qI~~~~e~~~eE~vREr~lkFl~~kl~~l~ 176 (550)
++-.-.++..+|+.+++..+.-...-|..+... + ......+++..|....+. ...-+|..++.|+-.....+.
T Consensus 435 --i~~llp~~~~~l~de~~~V~lnli~~ls~~~~v~~v~g~~~~s~slLp~i~el~~d-~~wRvr~ail~~ip~la~q~~ 511 (759)
T KOG0211|consen 435 --ISELLPLLIGNLKDEDPIVRLNLIDKLSLLEEVNDVIGISTVSNSLLPAIVELAED-LLWRVRLAILEYIPQLALQLG 511 (759)
T ss_pred --ccccChhhhhhcchhhHHHHHhhHHHHHHHHhccCcccchhhhhhhhhhhhhhccc-hhHHHHHHHHHHHHHHHHhhh
Confidence 666788889999999988877776544333222 1 122233444444421111 124478889998888777766
Q ss_pred hhhcCChHHHHHHHHHHHHhhhcc-cchH--HHHHHHHHHhhccccCCCCchhHHHHHHHHHHHhhcccccCCCCChhhH
Q 008865 177 AELLKPQEEMERHITDLIKKSLED-VTGA--EFRMFMDFLKSLSLFGEKAPTERMKELIGIIEGQADLDAQFNVSDADHI 253 (550)
Q Consensus 177 ~e~l~~~eE~Ee~i~~~ikKvL~d-Vt~~--EF~l~m~lL~sL~~~~~~~~~gr~qeLv~~i~eqa~Ld~~f~~sD~d~i 253 (550)
-+.+.+ . ....+..-|.| |-+. --...+-.| ...|+. . -.+ ++++-.+..+. + ++ -+.
T Consensus 512 ~~~~~~--~----~~~l~~~~l~d~v~~Ir~~aa~~l~~l--~~~~G~-~-w~~-~~~i~k~L~~~-~-q~------~y~ 572 (759)
T KOG0211|consen 512 VEFFDE--K----LAELLRTWLPDHVYSIREAAARNLPAL--VETFGS-E-WAR-LEEIPKLLAMD-L-QD------NYL 572 (759)
T ss_pred hHHhhH--H----HHHHHHhhhhhhHHHHHHHHHHHhHHH--HHHhCc-c-hhH-HHhhHHHHHHh-c-Cc------ccc
Confidence 444422 1 22222222322 1100 000011111 112221 1 112 44443333321 1 11 122
Q ss_pred HHH--HHHHHHhhhhhccCCCchhHHHHHHhhhcccCCCC---C-hhhhhhHHHHHHHhCCCCCchhhhhhhHHHHHHHH
Q 008865 254 DRL--ISCLYMALPFFLRGASGSKFLNYLNKHIIPVFDKL---P-EERKLDLLKALAEISPYTTPQDSRQILPSVAVLLK 327 (550)
Q Consensus 254 dRl--i~cl~~Alp~fs~~v~st~f~~y~~~~IlP~l~~L---~-~~~kl~lLK~lAE~s~~~~~~~a~~~l~~i~~~L~ 327 (550)
-|. +.|+....+.++. .++|++++|.+..+ | +..|+.++|.|-.+-++-.....+..+-++.+.|.
T Consensus 573 ~R~t~l~si~~la~v~g~--------ei~~~~Llp~~~~l~~D~vanVR~nvak~L~~i~~~L~~~~~~~~v~pll~~L~ 644 (759)
T KOG0211|consen 573 VRMTTLFSIHELAEVLGQ--------EITCEDLLPVFLDLVKDPVANVRINVAKHLPKILKLLDESVRDEEVLPLLETLS 644 (759)
T ss_pred hhhHHHHHHHHHHHHhcc--------HHHHHHHhHHHHHhccCCchhhhhhHHHHHHHHHhhcchHHHHHHHHHHHHHhc
Confidence 222 2344444444433 45788999987777 2 36899999999999998777666666555555554
Q ss_pred h
Q 008865 328 K 328 (550)
Q Consensus 328 ~ 328 (550)
.
T Consensus 645 ~ 645 (759)
T KOG0211|consen 645 S 645 (759)
T ss_pred c
Confidence 3
No 135
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=43.83 E-value=3.8e+02 Score=32.37 Aligned_cols=180 Identities=21% Similarity=0.286 Sum_probs=0.0
Q ss_pred HHHHHHhhccCCCCCChHHHHHHHHHHHhh--hcccchhhhcCChHHHHHHHHHHHHhhhcc-------cchHHHHHHHH
Q 008865 141 LTALFKHIGSVDEPSTDEFIREKVLSFIRD--KVFPLKAELLKPQEEMERHITDLIKKSLED-------VTGAEFRMFMD 211 (550)
Q Consensus 141 Lt~lf~qI~~~~e~~~eE~vREr~lkFl~~--kl~~l~~e~l~~~eE~Ee~i~~~ikKvL~d-------Vt~~EF~l~m~ 211 (550)
|..|++-|.+......+..+=..+++.|.- |+..-+..++ .--+=..+++.+++++++ -.+++.-.+|+
T Consensus 119 L~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv~~NR~~Ll--~~~al~~LL~~L~~~l~~~~~~~~~~i~E~LL~IiE 196 (802)
T PF13764_consen 119 LEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKVKVNRRALL--ELNALNRLLSVLNRALQANQNSSQAEIAEQLLEIIE 196 (802)
T ss_pred HHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhhHHHHHHHH--HcCCHHHHHHHHHHHHhCccccccchHHHHHHHHHH
Q ss_pred HHhhccccCCCCchhH----------HHHHHHHHHHhhcccccCCCCChhhHHHHHHHHHHhhhhhccCCCc--hhHHHH
Q 008865 212 FLKSLSLFGEKAPTER----------MKELIGIIEGQADLDAQFNVSDADHIDRLISCLYMALPFFLRGASG--SKFLNY 279 (550)
Q Consensus 212 lL~sL~~~~~~~~~gr----------~qeLv~~i~eqa~Ld~~f~~sD~d~idRli~cl~~Alp~fs~~v~s--t~f~~y 279 (550)
.|-+-..-.+-..... ..+-|+++.++ |++.+.-+++..++-++. .+||+..|-.. ..+++|
T Consensus 197 ~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~--l~s~~~r~~~~i~~~l~R----iLP~Lt~G~~e~m~~Lv~~ 270 (802)
T PF13764_consen 197 SLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLER--LNSPFVRSNPQILQALAR----ILPFLTYGNEEKMDALVEH 270 (802)
T ss_pred HHHHHHhhhhhhhccccccccccccccHHHHHHHHHH--hcCccccCCHHHHHHHHH----HhhHHhcCCHHHHHHHHHH
Q ss_pred HHhhhcccCCCCChh------hhhhHHHHHHHhCC--CCCchhhhhhhHH-HHHHHHhhC
Q 008865 280 LNKHIIPVFDKLPEE------RKLDLLKALAEISP--YTTPQDSRQILPS-VAVLLKKYM 330 (550)
Q Consensus 280 ~~~~IlP~l~~L~~~------~kl~lLK~lAE~s~--~~~~~~a~~~l~~-i~~~L~~~m 330 (550)
|...+ .|+..+.+ .+++.+-.+++..| ++|..=-+.++.. |.+.+..|+
T Consensus 271 F~p~l--~f~~~D~~~~~~~~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL 328 (802)
T PF13764_consen 271 FKPYL--DFDKFDEEHSPDEQFKLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYL 328 (802)
T ss_pred HHHhc--ChhhcccccCchHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHH
No 136
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=42.28 E-value=77 Score=27.89 Aligned_cols=53 Identities=17% Similarity=0.240 Sum_probs=40.2
Q ss_pred HHHHhhcccccccc----CcchhhhHHHHHHHHHhhchhHHHHHHHHHHHHHHhhch
Q 008865 85 RVQAIRGLPLFCKD----TPEYLSKIVDILVQLLAAEEIVERDAVHKALMSLLRQDV 137 (550)
Q Consensus 85 R~qaik~Lp~lck~----~~e~~~riaDVL~QLLqsdd~~E~~~v~~aL~sllk~D~ 137 (550)
|+.|+-+|-.+|.. -.+|++.|...+..++.+.|+..+-.+-.||-.+.+.-.
T Consensus 3 R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~ 59 (97)
T PF12755_consen 3 RKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVAR 59 (97)
T ss_pred hhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHH
Confidence 55555555544433 346778888888899999999999999999999988743
No 137
>PF07794 DUF1633: Protein of unknown function (DUF1633); InterPro: IPR012436 This family contains sequences derived from a group of hypothetical proteins expressed by Arabidopsis thaliana (Mouse-ear cress). These sequences are highly similar and the region concerned is about 100 residues long.
Probab=41.91 E-value=18 Score=40.78 Aligned_cols=14 Identities=57% Similarity=0.959 Sum_probs=7.3
Q ss_pred CCCCCCCCCCCCcc
Q 008865 524 GISRGGRGGIRGRG 537 (550)
Q Consensus 524 g~~~~~~~g~rgrg 537 (550)
|.|.||.||.|||+
T Consensus 456 g~s~~~grgsrg~~ 469 (790)
T PF07794_consen 456 GRSQGGGRGSRGRS 469 (790)
T ss_pred ccccCCCcCCCCCC
Confidence 45555555555544
No 138
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=41.83 E-value=3.1e+02 Score=27.54 Aligned_cols=142 Identities=17% Similarity=0.201 Sum_probs=83.5
Q ss_pred cchHHHHHHHHHhhhhhhccccccChh-hHHHHHHHhcCC-HHHHHHHhhhhhHHhc----cCCCcchHHHHHhhh---h
Q 008865 6 DEAKQIEKLYEFGERLNEAKDKSQNVK-DYEGIIEAAKTS-LKAKQLAAQLIPRFFK----FFPDLSSRAVDAHLD---L 76 (550)
Q Consensus 6 ~~~~~ie~LY~~~~~L~~akd~~~~~~-~y~~Il~~~Kgs-~k~K~LAaQfI~kffk----~FP~L~e~Ai~a~lD---L 76 (550)
.+...+-.+.+.-..|...++ .... --+.|-..+++. ....-++-+...++++ .||.|+.-.....++ .
T Consensus 13 ~~~~~~~~~L~~L~~l~~~~~--~~~~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f~~L~~~L~~~~~r~~~~ 90 (234)
T PF12530_consen 13 SDPELQLPLLEALPSLACHKN--VCVPPVLQTLVSLVEQGSLELRYVALRLLTLLWKANDRHFPFLQPLLLLLILRIPSS 90 (234)
T ss_pred CChHHHHHHHHHHHHHhccCc--cchhHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHhhcccc
Confidence 344455566666666666664 3333 344444456644 4443455555555554 567777665554444 1
Q ss_pred hcccc--hhHHHHHhhccccccccCcchhhhHHHHHHHHH-hhchhHHHHHHHHHHHHHHhh---chHHHHHHHHHhhc
Q 008865 77 IEEEE--LGVRVQAIRGLPLFCKDTPEYLSKIVDILVQLL-AAEEIVERDAVHKALMSLLRQ---DVKASLTALFKHIG 149 (550)
Q Consensus 77 cEDed--~~IR~qaik~Lp~lck~~~e~~~riaDVL~QLL-qsdd~~E~~~v~~aL~sllk~---D~k~tLt~lf~qI~ 149 (550)
+-+++ -.+.+..--.+=.+|+..|++-.-+.-.|.++| +.++++-....=.+|..+... |+..+..++-.++.
T Consensus 91 ~~~~~~~~~~~i~~a~s~~~ic~~~p~~g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc~~~vvd~~s~w~vl~~~l~ 169 (234)
T PF12530_consen 91 FSSKDEFWECLISIAASIRDICCSRPDHGVDLLPLLSGCLNQSCDEVAQALALEALAPLCEAEVVDFYSAWKVLQKKLS 169 (234)
T ss_pred cCCCcchHHHHHHHHHHHHHHHHhChhhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhcC
Confidence 22222 223333222344579989886556666678888 777777777777788888865 77777777777764
No 139
>PF15320 RAM: mRNA cap methylation, RNMT-activating mini protein
Probab=41.25 E-value=40 Score=29.23 Aligned_cols=6 Identities=17% Similarity=0.728 Sum_probs=4.2
Q ss_pred cccccc
Q 008865 468 SVNLSW 473 (550)
Q Consensus 468 ~i~lSW 473 (550)
+|..-|
T Consensus 30 PIV~~W 35 (81)
T PF15320_consen 30 PIVEPW 35 (81)
T ss_pred CEecCc
Confidence 666777
No 140
>PTZ00034 40S ribosomal protein S10; Provisional
Probab=39.75 E-value=19 Score=33.47 Aligned_cols=12 Identities=8% Similarity=0.127 Sum_probs=7.5
Q ss_pred HHhhhhhcCCCC
Q 008865 451 AMSKPLHSKTPS 462 (550)
Q Consensus 451 ~li~~l~~~pPs 462 (550)
.-++..+|=||.
T Consensus 75 eyLR~yL~LP~e 86 (124)
T PTZ00034 75 EYLRTYLHLPPD 86 (124)
T ss_pred HHHHHHhCCCcc
Confidence 445667777755
No 141
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=38.27 E-value=2.3e+02 Score=33.85 Aligned_cols=47 Identities=19% Similarity=0.325 Sum_probs=25.8
Q ss_pred HHHHHHhhhcccchHHHH-HHHHHHh-hccccCCCCchhHHHHHHHHHH
Q 008865 190 ITDLIKKSLEDVTGAEFR-MFMDFLK-SLSLFGEKAPTERMKELIGIIE 236 (550)
Q Consensus 190 i~~~ikKvL~dVt~~EF~-l~m~lL~-sL~~~~~~~~~gr~qeLv~~i~ 236 (550)
+...+.|+++--|+.+|. -|..+++ -++.++-.+.+.|+-+++.-|.
T Consensus 22 ~~kl~~k~~em~t~~~F~eeflr~vn~il~vkKresi~dRIl~fla~fv 70 (892)
T KOG2025|consen 22 YSKLLAKVMEMLTAHEFSEEFLRVVNYILLVKKRESIPDRILSFLARFV 70 (892)
T ss_pred HHHHHHHHHHhhhHhhhHHHHHHHHHHheeeccCCCcHHHHHHHHHHHH
Confidence 445666666656666664 3455555 4555554455566555444443
No 142
>PF10193 Telomere_reg-2: Telomere length regulation protein; InterPro: IPR019337 This entry represents a conserved domain found in a group of proteins called telomere-length regulation, or clock abnormal protein-2, which are conserved from plants to humans. These proteins regulate telomere length and contribute to silencing of sub-telomeric regions []. In vitro the protein binds to telomeric DNA repeats. ; PDB: 3O4Z_B.
Probab=38.22 E-value=65 Score=29.18 Aligned_cols=74 Identities=15% Similarity=0.192 Sum_probs=45.2
Q ss_pred hhccc-chhHHHHHhhccccccccCcch---hhhHHHHHHHHHhh-ch----hHHHHHHHHHHHHHHhhchHHHHHHHHH
Q 008865 76 LIEEE-ELGVRVQAIRGLPLFCKDTPEY---LSKIVDILVQLLAA-EE----IVERDAVHKALMSLLRQDVKASLTALFK 146 (550)
Q Consensus 76 LcEDe-d~~IR~qaik~Lp~lck~~~e~---~~riaDVL~QLLqs-dd----~~E~~~v~~aL~sllk~D~k~tLt~lf~ 146 (550)
|-+|+ |......|++..|.+-+-.+.| +...|.=|++.|.. ++ +.=-..-.+||++++-.+|..+..-|++
T Consensus 12 L~~~~~~~e~~e~aL~~a~~LIR~k~~fg~el~~~a~eL~~~Ll~L~~~f~~~~Fe~~R~~alval~v~~P~~~~~~L~~ 91 (114)
T PF10193_consen 12 LRSDDEDYEKFEAALKSAEKLIRRKPDFGTELSEYAEELLKALLHLQNKFDIENFEELRQNALVALVVAAPEKVAPYLTE 91 (114)
T ss_dssp HT------S-SHHHHHHHHHHHHS-----SSHHHHHHHHHHHHHH---TT--TTTTHHHHHHHHHHHHHSGGGHHH-HHH
T ss_pred HhcCcCCHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHhhccccCCccCHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 33344 6777889999999999988884 55555445444444 22 2223567899999999999988888888
Q ss_pred hhc
Q 008865 147 HIG 149 (550)
Q Consensus 147 qI~ 149 (550)
++-
T Consensus 92 ~f~ 94 (114)
T PF10193_consen 92 EFF 94 (114)
T ss_dssp HHT
T ss_pred HHh
Confidence 887
No 143
>KOG2479 consensus Translation initiation factor 3, subunit d (eIF-3d) [Translation, ribosomal structure and biogenesis]
Probab=38.08 E-value=25 Score=39.07 Aligned_cols=12 Identities=50% Similarity=0.614 Sum_probs=5.4
Q ss_pred CCCCCCcccCCC
Q 008865 530 RGGIRGRGRGWG 541 (550)
Q Consensus 530 ~~g~rgrgr~~g 541 (550)
|+++|+|||.+|
T Consensus 141 r~~~~~~g~rfg 152 (549)
T KOG2479|consen 141 RLYGRNRGRRFG 152 (549)
T ss_pred hhcccccccccc
Confidence 334444444444
No 144
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=37.66 E-value=20 Score=25.01 Aligned_cols=28 Identities=21% Similarity=0.274 Sum_probs=20.3
Q ss_pred HHHHhhhhhcccchhHHHHHhhcccccc
Q 008865 69 AVDAHLDLIEEEELGVRVQAIRGLPLFC 96 (550)
Q Consensus 69 Ai~a~lDLcEDed~~IR~qaik~Lp~lc 96 (550)
+|..++.|+..+|..|+.+|+..|-.+|
T Consensus 13 ~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 13 GLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 5667777777777778777777776655
No 145
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=37.26 E-value=52 Score=34.21 Aligned_cols=18 Identities=44% Similarity=0.560 Sum_probs=8.5
Q ss_pred CCCcccCCCCCCCCCCCC
Q 008865 533 IRGRGRGWGARGRGRGYR 550 (550)
Q Consensus 533 ~rgrgr~~g~~gr~~~~~ 550 (550)
.|..+++.|+++-|++||
T Consensus 242 ~Rr~~~~~~~~~~~~~~r 259 (260)
T KOG2202|consen 242 ERRSGRRGGTGLQGRYYR 259 (260)
T ss_pred cccccccCCccccccccc
Confidence 444444444455555554
No 146
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=37.02 E-value=1.4e+02 Score=30.68 Aligned_cols=48 Identities=27% Similarity=0.376 Sum_probs=25.7
Q ss_pred chhHHHHHhhccccccccCcch---hhh-HHHHHHHHHhhchhHHHHHHHHHHH
Q 008865 81 ELGVRVQAIRGLPLFCKDTPEY---LSK-IVDILVQLLAAEEIVERDAVHKALM 130 (550)
Q Consensus 81 d~~IR~qaik~Lp~lck~~~e~---~~r-iaDVL~QLLqsdd~~E~~~v~~aL~ 130 (550)
|+.++..|+|.|-.++..+ +| +.+ +.| |.+||.+.+..-...|-+.|+
T Consensus 108 ns~~Q~agLrlL~nLtv~~-~~~~~l~~~i~~-ll~LL~~G~~~~k~~vLk~L~ 159 (254)
T PF04826_consen 108 NSEVQLAGLRLLTNLTVTN-DYHHMLANYIPD-LLSLLSSGSEKTKVQVLKVLV 159 (254)
T ss_pred CCHHHHHHHHHHHccCCCc-chhhhHHhhHHH-HHHHHHcCChHHHHHHHHHHH
Confidence 4446666677776666654 22 223 444 456777765544444444443
No 147
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=36.97 E-value=4.7e+02 Score=31.81 Aligned_cols=130 Identities=24% Similarity=0.340 Sum_probs=86.3
Q ss_pred CCcchHHHHHhhhhhccc-chhHHHHHhhccccccccCc-------chhhhHHHHHHHHHhhchhHH-HHHHHHHHHHHH
Q 008865 63 PDLSSRAVDAHLDLIEEE-ELGVRVQAIRGLPLFCKDTP-------EYLSKIVDILVQLLAAEEIVE-RDAVHKALMSLL 133 (550)
Q Consensus 63 P~L~e~Ai~a~lDLcEDe-d~~IR~qaik~Lp~lck~~~-------e~~~riaDVL~QLLqsdd~~E-~~~v~~aL~sll 133 (550)
-|+..-+-.|.+-|..|+ |.-||..+++.+-....|-+ .|++-+=+.|-+||.+-+..+ ...|=+-|..++
T Consensus 521 ~e~k~l~Y~a~lnLL~d~~D~vV~Ltt~~tlkl~vDD~nF~~dsFlp~lenlf~~lfkll~~~~e~Dtk~~VL~~ls~lI 600 (978)
T KOG1993|consen 521 LELKPLLYCAFLNLLQDQNDLVVRLTTARTLKLVVDDWNFSEDSFLPYLENLFVLLFKLLKAVEECDTKTSVLNLLSTLI 600 (978)
T ss_pred HhHHHHHHHHHHHhcCccccceeehHHHHHHHHhhhhccCChhhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 345556667788888888 88899999999877665531 236667788899998855444 334444444443
Q ss_pred hh------chHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhhhcccchhhhcCChHHHHHHHHHHHHhhh
Q 008865 134 RQ------DVKASLTALFKHIGSVDEPSTDEFIREKVLSFIRDKVFPLKAELLKPQEEMERHITDLIKKSL 198 (550)
Q Consensus 134 k~------D~k~tLt~lf~qI~~~~e~~~eE~vREr~lkFl~~kl~~l~~e~l~~~eE~Ee~i~~~ikKvL 198 (550)
-. +=.+++-.++.++= ++.+++..+|-.+|.-++.=+..++. ...++--++...|..+-
T Consensus 601 ~r~~e~I~P~~~~ivq~lp~LW--e~s~~e~lLr~alL~~L~~lV~alg~----qS~~~~~fL~pVIel~~ 665 (978)
T KOG1993|consen 601 ERVSEHIAPYASTIVQYLPLLW--EESEEEPLLRCALLATLRNLVNALGA----QSFEFYPFLYPVIELST 665 (978)
T ss_pred HHHHHhhhHHHHHHHHHHHHHH--hhhccCcHHHHHHHHHHHHHHHHhcc----CCccchHHHHHHHHHhc
Confidence 32 33455556666554 45556667899999888776666643 24577778888887764
No 148
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=36.74 E-value=6.6e+02 Score=31.65 Aligned_cols=108 Identities=19% Similarity=0.223 Sum_probs=56.3
Q ss_pred ccchHHHHHHHHHhhhhhhccccccChhhHHHHHHHhcCCHHHHHHHhhhhhHHhcc----CCCcch-------HHHHHh
Q 008865 5 SDEAKQIEKLYEFGERLNEAKDKSQNVKDYEGIIEAAKTSLKAKQLAAQLIPRFFKF----FPDLSS-------RAVDAH 73 (550)
Q Consensus 5 ~~~~~~ie~LY~~~~~L~~akd~~~~~~~y~~Il~~~Kgs~k~K~LAaQfI~kffk~----FP~L~e-------~Ai~a~ 73 (550)
..+...|.+||....-..+..+...+.+.|+-+=....+ +..+-+..|+|---|.. |-+... ..+..+
T Consensus 646 ~~~e~~vs~l~~v~~~~e~~~~~~vQkK~yrlL~~l~~~-~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L 724 (1176)
T KOG1248|consen 646 VQTESQVSKLFTVDPEFENSSSTKVQKKAYRLLEELSSS-PSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRL 724 (1176)
T ss_pred cccchhHHHHHHhhHHhhccccHHHHHHHHHHHHHHhcC-CchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHH
Confidence 455567788884443333322334677788766555555 66666777776544431 111111 245556
Q ss_pred hhhhcccchhHHHHHhhccccccccCcchhhhHHHHHHHH
Q 008865 74 LDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQL 113 (550)
Q Consensus 74 lDLcEDed~~IR~qaik~Lp~lck~~~e~~~riaDVL~QL 113 (550)
+|+|.-+....=-++|.++-..-|+..++..+.|=-|.+.
T Consensus 725 ~~~~~~e~~~~i~k~I~EvIL~~Ke~n~~aR~~Af~lL~~ 764 (1176)
T KOG1248|consen 725 LKLLSAEHCDLIPKLIPEVILSLKEVNVKARRNAFALLVF 764 (1176)
T ss_pred HHhccHHHHHHHHHHHHHHHHhcccccHHHHhhHHHHHHH
Confidence 6666633333334445554444466556666655444333
No 149
>KOG3758 consensus Uncharacterized conserved protein [Function unknown]
Probab=36.70 E-value=4.4e+02 Score=30.90 Aligned_cols=168 Identities=14% Similarity=0.232 Sum_probs=96.9
Q ss_pred hHHHHHHHHHHHhhhcccc------hh-hhcCChHHHHHHH--HHHHHh------hhcccchHHHHHHHHHHhhccccCC
Q 008865 157 DEFIREKVLSFIRDKVFPL------KA-ELLKPQEEMERHI--TDLIKK------SLEDVTGAEFRMFMDFLKSLSLFGE 221 (550)
Q Consensus 157 eE~vREr~lkFl~~kl~~l------~~-e~l~~~eE~Ee~i--~~~ikK------vL~dVt~~EF~l~m~lL~sL~~~~~ 221 (550)
++..+.+++..|.+++..+ |+ +++ |.+.+.+++ +.+|.+ +.+|+-..+|.++.+.+-
T Consensus 398 ~d~s~q~~~~~l~~~~~~l~~~~l~p~~DLl-Ppp~v~~~l~ll~ei~~~~~a~~~~~d~~~~df~~l~s~vl------- 469 (655)
T KOG3758|consen 398 EDISKQRFIGYLEDHVKKLMRKELSPPSDLL-PPPAVREYLNLLVEIFEIYEASHTAEDGEQLDFKLLLSCVL------- 469 (655)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCccccC-CCHHHHHHHHHHHHHHHHhhhhhccccccccchHHHHHHHH-------
Confidence 4567899999998876442 22 444 445665543 222222 345666677776543222
Q ss_pred CCchhHHHHHHHHHHHhhcccccCCCCChhhHHHHHHHHHHhhhhhccCCCchhHHHHHHhhhcccCCCCChhhhhhHHH
Q 008865 222 KAPTERMKELIGIIEGQADLDAQFNVSDADHIDRLISCLYMALPFFLRGASGSKFLNYLNKHIIPVFDKLPEERKLDLLK 301 (550)
Q Consensus 222 ~~~~gr~qeLv~~i~eqa~Ld~~f~~sD~d~idRli~cl~~Alp~fs~~v~st~f~~y~~~~IlP~l~~L~~~~kl~lLK 301 (550)
++|++++...|... ++.+|...+=-.|.|+.+.....++..--.+.+.++-.++--+++.|. ..+..
T Consensus 470 -------dpilq~c~~sae~~--lp~~d~~~~if~iNcL~~iks~l~~~e~~~~~~e~lq~~ie~~~d~L~-t~q~s--- 536 (655)
T KOG3758|consen 470 -------DPILQMCQKSAEAH--LPTSDKGSLIFMINCLDLIKSRLARYEFLDERVEMLQAKIEAYLDTLV-TLQVS--- 536 (655)
T ss_pred -------HHHHHHHHHHHHhc--CCCcccccceehhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH---
Confidence 56777777665433 666777666667889888777776655555555555544433333221 00000
Q ss_pred HHHHhCCCCCchhhhhhhHHHHHHHHhhCCCCC--CCCCccchHHHHHHHHHHHHh
Q 008865 302 ALAEISPYTTPQDSRQILPSVAVLLKKYMPLRK--TGGEEMNFTYVECLLYTFHHL 355 (550)
Q Consensus 302 ~lAE~s~~~~~~~a~~~l~~i~~~L~~~mP~~~--~~~~~l~fS~vEcLL~afh~L 355 (550)
..-+..=|-.+|+.+-..-|..+ +..|++.-..+-..+-.|...
T Consensus 537 ----------~ll~~~GLs~~~q~~~~~~p~~~~ls~~~~l~s~~~~~~i~~fd~~ 582 (655)
T KOG3758|consen 537 ----------FLLENTGLSDLYQKFNMITPEDSVLSLDPDLESALLDEAIVKFDMF 582 (655)
T ss_pred ----------HHHHHcChHHHHHHHHhcCcchhhhhccccccHHHHHHHHHHHHHH
Confidence 01122235567888888888777 456777777776666666664
No 150
>PF03914 CBF: CBF/Mak21 family; InterPro: IPR005612 This domain is present in the CAATT-binding protein which is essential for growth and necessary for 60S ribosomal subunit biogenesis. Other proteins containing this domain stimulate transcription from the HSP70 promoter.
Probab=36.64 E-value=2.3e+02 Score=26.74 Aligned_cols=73 Identities=32% Similarity=0.439 Sum_probs=49.0
Q ss_pred HHHHHHHHHhh--hhh-ccCCCchhHHHHHHhhhcccCCCCChhhhhhHHHHHHHhCCCCCchhhhhhhHHHHHHHHh
Q 008865 254 DRLISCLYMAL--PFF-LRGASGSKFLNYLNKHIIPVFDKLPEERKLDLLKALAEISPYTTPQDSRQILPSVAVLLKK 328 (550)
Q Consensus 254 dRli~cl~~Al--p~f-s~~v~st~f~~y~~~~IlP~l~~L~~~~kl~lLK~lAE~s~~~~~~~a~~~l~~i~~~L~~ 328 (550)
+||...+...+ |.. +....+.-|++.+..-+ .=+.+|..+-.-++|-|+.+|-++.+..+-.++..|..+|..
T Consensus 21 ~~FY~~LY~~L~~p~~~~~~~~~~~~l~lL~~~l--~~~~~~~~rvaAFiKRLl~~sl~~~~~~~~~~L~~i~~ll~~ 96 (164)
T PF03914_consen 21 DRFYRALYSLLLDPELFSSSDKSALLLNLLDKSL--KSDHLPIQRVAAFIKRLLQLSLHLPPSFALAILALIRKLLKR 96 (164)
T ss_pred HHHHHHHHHHHcchhhccccchHHHHHHHHHHHH--cccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 77777777776 332 22212334888777666 556667788888899999998877776666666666666654
No 151
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=36.52 E-value=1.6e+02 Score=34.81 Aligned_cols=70 Identities=27% Similarity=0.415 Sum_probs=47.2
Q ss_pred hhhhHHhccCCCcchHHHHHhhhhhcccchhHHHHHhhccccccccCcc----hhhhHHHHHHHHHhhchhHHHHHHHHH
Q 008865 53 QLIPRFFKFFPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPE----YLSKIVDILVQLLAAEEIVERDAVHKA 128 (550)
Q Consensus 53 QfI~kffk~FP~L~e~Ai~a~lDLcEDed~~IR~qaik~Lp~lck~~~e----~~~riaDVL~QLLqsdd~~E~~~v~~a 128 (550)
-+||||+.+|- ...+.||.-|++-+-++--.+++ ++.+...+|-+|-+.+++.++..|=.|
T Consensus 174 ~mipkfl~f~~---------------h~spkiRs~A~~cvNq~i~~~~qal~~~iD~Fle~lFalanD~~~eVRk~vC~a 238 (885)
T KOG2023|consen 174 IMIPKFLQFFK---------------HPSPKIRSHAVGCVNQFIIIQTQALYVHIDKFLEILFALANDEDPEVRKNVCRA 238 (885)
T ss_pred HhHHHHHHHHh---------------CCChhHHHHHHhhhhheeecCcHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHH
Confidence 36777777663 33556666666666655555544 366677777777777888888888888
Q ss_pred HHHHHhhch
Q 008865 129 LMSLLRQDV 137 (550)
Q Consensus 129 L~sllk~D~ 137 (550)
|+-|+..-|
T Consensus 239 lv~Llevr~ 247 (885)
T KOG2023|consen 239 LVFLLEVRP 247 (885)
T ss_pred HHHHHHhcH
Confidence 888876644
No 152
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=36.15 E-value=1.7e+02 Score=32.52 Aligned_cols=162 Identities=20% Similarity=0.347 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhccCCCCCChHHHH--HHHHHHHhhhcccchhhhcCChHHHHHHHHHHHHhhhcccchHHHHHHHHHHhh
Q 008865 138 KASLTALFKHIGSVDEPSTDEFIR--EKVLSFIRDKVFPLKAELLKPQEEMERHITDLIKKSLEDVTGAEFRMFMDFLKS 215 (550)
Q Consensus 138 k~tLt~lf~qI~~~~e~~~eE~vR--Er~lkFl~~kl~~l~~e~l~~~eE~Ee~i~~~ikKvL~dVt~~EF~l~m~lL~s 215 (550)
..-|+.||.-|......+.|-.+| =|++.++.+.+.+.-..++
T Consensus 25 ~~ll~~Lf~~i~~~~s~ENeylMk~iMRvl~~~~e~~~p~~~~il----------------------------------- 69 (435)
T PF03378_consen 25 QQLLQNLFALIEKPGSAENEYLMKCIMRVLSVLQEDILPIAVEIL----------------------------------- 69 (435)
T ss_dssp HHHHHHHHHHHHTT-STC-HHHHHHHHHHHHHSTTTTGGGHHHHH-----------------------------------
T ss_pred HHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhHHHHHHHHHHHH-----------------------------------
Q ss_pred ccccCCCCchhHHHHHHHHHHHhhcccccCCCCChhhHHHHHHHHHHhhhhhccCCCchhHHHHHHhhhcccCCCCChhh
Q 008865 216 LSLFGEKAPTERMKELIGIIEGQADLDAQFNVSDADHIDRLISCLYMALPFFLRGASGSKFLNYLNKHIIPVFDKLPEER 295 (550)
Q Consensus 216 L~~~~~~~~~gr~qeLv~~i~eqa~Ld~~f~~sD~d~idRli~cl~~Alp~fs~~v~st~f~~y~~~~IlP~l~~L~~~~ 295 (550)
+.|+.++.+-++ |++||.--.-+-+++--.+.+.+. .....+.-+...++|.|..+
T Consensus 70 -------------~~L~~il~~v~k-----NPsnP~FnHylFEsi~~lir~~~~--~~~~~v~~~E~~L~P~f~~I---- 125 (435)
T PF03378_consen 70 -------------QHLTAILKEVSK-----NPSNPRFNHYLFESIGALIRFVCE--ADPEAVSQFEEALFPPFQEI---- 125 (435)
T ss_dssp -------------HHHHHHHHHHHT-----S---HHHHHHHHHHHHHHHHHS-G--GGHH---HHHHHHHHHHHHH----
T ss_pred -------------HHHHHHHHHHHh-----CCCCcchhhhHHHHHHHHHHhccC--CChhHHHHHHHHHHHHHHHH----
Q ss_pred hhhHHHHHHHhCCCCCchhhhhhhHHHHHHHHhhCCCCC-CCCCccchHHHHHHHHHHHHhhhcCchhhhhccCcccccC
Q 008865 296 KLDLLKALAEISPYTTPQDSRQILPSVAVLLKKYMPLRK-TGGEEMNFTYVECLLYTFHHLAHKAPNATNSLCGYKIVTG 374 (550)
Q Consensus 296 kl~lLK~lAE~s~~~~~~~a~~~l~~i~~~L~~~mP~~~-~~~~~l~fS~vEcLL~afh~L~~k~p~~l~~~cg~k~~Tg 374 (550)
=.+|..+.+|.+|+.|--.+-..+ ..-|+.....+.+|| +|...
T Consensus 126 ---------------Lq~dV~EF~PYvfQIla~Lle~~~~~~~p~~y~~L~~~Ll---------~p~lW----------- 170 (435)
T PF03378_consen 126 ---------------LQQDVQEFIPYVFQILAQLLELRPSSPLPDAYKQLFPPLL---------SPALW----------- 170 (435)
T ss_dssp ---------------HHTT-TTTHHHHHHHHHHHHHHSS--S--TTTGGGHHHHT---------SGGGG-----------
T ss_pred ---------------HHHHHHHHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHc---------Ccchh-----------
Q ss_pred CCCCccCcChhhhHHHHHHHHHHHHHHHHHHHHH
Q 008865 375 QPSDRLGEDFSDCYKDFTERLTTVEDLTRATMKK 408 (550)
Q Consensus 375 qpsd~lgeD~~~~~kdFr~RLqyl~~~~q~yikk 408 (550)
+++.-.--+.|+.++||++
T Consensus 171 ---------------e~~gniPalvrLL~a~i~k 189 (435)
T PF03378_consen 171 ---------------ERRGNIPALVRLLQAYIKK 189 (435)
T ss_dssp ---------------GSTTTHHHHHHHHHHHHHH
T ss_pred ---------------ccCCCcCcHHHHHHHHHHh
No 153
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=35.45 E-value=1.7e+02 Score=34.53 Aligned_cols=89 Identities=20% Similarity=0.244 Sum_probs=47.2
Q ss_pred HHHHHhhccccccccCcchhhhHHHHH--HHHHhhchhHH--HHHHHHHHHHHHh-hchHHHHHHHHHhhccCCCCCChH
Q 008865 84 VRVQAIRGLPLFCKDTPEYLSKIVDIL--VQLLAAEEIVE--RDAVHKALMSLLR-QDVKASLTALFKHIGSVDEPSTDE 158 (550)
Q Consensus 84 IR~qaik~Lp~lck~~~e~~~riaDVL--~QLLqsdd~~E--~~~v~~aL~sllk-~D~k~tLt~lf~qI~~~~e~~~eE 158 (550)
=|++-.|=||.+|.+= ....=+++|| ++++....+.. -..+.-+|..+++ .|++-++-=||.....--+--..|
T Consensus 306 ~rv~~~kiLP~L~~el-~n~~~vp~~LP~v~~i~~~~s~~~~~~~~~p~l~pi~~~~~~~~~~l~i~e~mdlL~~Kt~~e 384 (700)
T KOG2137|consen 306 ARVLFQKILPTLVAEL-VNTKMVPIVLPLVLLIAEGLSQNEFGPKMLPALKPIYSASDPKQALLFILENMDLLKEKTPPE 384 (700)
T ss_pred HHHHHHhhhhHHHHHh-ccccccccccchhhhhhhccchhhhhhhhhHHHHHHhccCCcccchhhHHhhHHHHHhhCChH
Confidence 3888888899999742 1112255555 44444433333 3455666777777 577766666665541111112234
Q ss_pred HHHHHHHHHHhhhcc
Q 008865 159 FIREKVLSFIRDKVF 173 (550)
Q Consensus 159 ~vREr~lkFl~~kl~ 173 (550)
.+.+.++.+|..-+.
T Consensus 385 ~~~~~IlplL~~S~~ 399 (700)
T KOG2137|consen 385 EVKEKILPLLYRSLE 399 (700)
T ss_pred HHHHHHHHHHHHHhc
Confidence 455555555544443
No 154
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=35.43 E-value=7.8e+02 Score=28.74 Aligned_cols=119 Identities=15% Similarity=0.117 Sum_probs=71.0
Q ss_pred hHHHHHHHHHHHHhhhcccchHHHHHHHHHHhhccccCCCCchhHHHHHHHHHHHhhc--ccccCCCCChhhHHHHHHHH
Q 008865 183 QEEMERHITDLIKKSLEDVTGAEFRMFMDFLKSLSLFGEKAPTERMKELIGIIEGQAD--LDAQFNVSDADHIDRLISCL 260 (550)
Q Consensus 183 ~eE~Ee~i~~~ikKvL~dVt~~EF~l~m~lL~sL~~~~~~~~~gr~qeLv~~i~eqa~--Ld~~f~~sD~d~idRli~cl 260 (550)
+.++.+.+..++++-...|. .+|-.++.+-|+| .++.=++...+. =+.-|++.|.+.+..++...
T Consensus 564 s~~l~e~lyk~~~~dpr~vE----~lfkyv~dnqpi~---------~eafIWlfkk~~~~Edglfd~ddke~vR~~l~Sa 630 (711)
T COG1747 564 SLELREALYKEGEKDPRVVE----ALFKYVADNQPIY---------PEAFIWLFKKAYSIEDGLFDSDDKETVRMSLGSA 630 (711)
T ss_pred cHHHHHHHHHHhhcCHHHHH----HHHHHHHhcCcch---------HHHHHHHHHHhccccccccChhhHHHHHHHHHHH
Confidence 45677777776655533332 2556666666666 334444443322 23568888888887777766
Q ss_pred HHhhhhhccCCCc---hhHHHHHHhhhcccCCCC-ChhhhhhHHHHHHHhCCCCCchhhh
Q 008865 261 YMALPFFLRGASG---SKFLNYLNKHIIPVFDKL-PEERKLDLLKALAEISPYTTPQDSR 316 (550)
Q Consensus 261 ~~Alp~fs~~v~s---t~f~~y~~~~IlP~l~~L-~~~~kl~lLK~lAE~s~~~~~~~a~ 316 (550)
-.++|--+...+. ..+.+|+..+-+-.-..+ .++ .+++|-|--+|.+|..--+.
T Consensus 631 l~~m~qnas~ssk~lgk~l~~lLVgq~yl~~~~~i~~~--~e~akef~ll~~kcpqF~~~ 688 (711)
T COG1747 631 LCAMPQNASTSSKRLGKKLWTLLVGQRYLGVRQLITEA--EETAKEFGLLSEKCPQFPPK 688 (711)
T ss_pred HHhhhcccCcchHHHHHHHHHHHhcccceeeehhhhhh--HHHHHHHHHHHHhcCCCChh
Confidence 6666666555444 556666665443322222 223 78999999999999644333
No 155
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=34.44 E-value=5.1e+02 Score=30.81 Aligned_cols=182 Identities=16% Similarity=0.218 Sum_probs=104.6
Q ss_pred hHHHHHhhccccccccCcchhh-----hHHHHHHHHHhhchhHHHHHHHHHHHHHHhh-chHHHHHHHHHhhccCCCCCC
Q 008865 83 GVRVQAIRGLPLFCKDTPEYLS-----KIVDILVQLLAAEEIVERDAVHKALMSLLRQ-DVKASLTALFKHIGSVDEPST 156 (550)
Q Consensus 83 ~IR~qaik~Lp~lck~~~e~~~-----riaDVL~QLLqsdd~~E~~~v~~aL~sllk~-D~k~tLt~lf~qI~~~~e~~~ 156 (550)
.|-...|+=+-.||+..|||++ ||+==|+-+|.+-..+=+-.+.+++=-+-+. -|..+|-.|++.+. ..
T Consensus 703 Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is~aiGPqdvL~~LlnnLk-----vq 777 (975)
T COG5181 703 KVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKSWNKEIRRNATETFGCISRAIGPQDVLDILLNNLK-----VQ 777 (975)
T ss_pred HHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHHhhcCHHHHHHHHHhcch-----HH
Confidence 3778889999999999999965 6777788888887766666666665544443 66666666666664 22
Q ss_pred hHHHH--------------------------------------HHHHHHHhhhcccchhhhcCChHHHHHHHHHHHHhhh
Q 008865 157 DEFIR--------------------------------------EKVLSFIRDKVFPLKAELLKPQEEMERHITDLIKKSL 198 (550)
Q Consensus 157 eE~vR--------------------------------------Er~lkFl~~kl~~l~~e~l~~~eE~Ee~i~~~ikKvL 198 (550)
|-+.| -|+++|+-+.+.....++ --.|+-++.-.|
T Consensus 778 eRq~RvctsvaI~iVae~cgpfsVlP~lm~dY~TPe~nVQnGvLkam~fmFeyig~~s~dY-------vy~itPlleDAl 850 (975)
T COG5181 778 ERQQRVCTSVAISIVAEYCGPFSVLPTLMSDYETPEANVQNGVLKAMCFMFEYIGQASLDY-------VYSITPLLEDAL 850 (975)
T ss_pred HHHhhhhhhhhhhhhHhhcCchhhHHHHHhcccCchhHHHHhHHHHHHHHHHHHHHHHHHH-------HHHhhHHHHhhh
Confidence 22222 123333333332222111 233556666666
Q ss_pred cccchHHHHHHHHHHhhccccCCCCchhH-HHHHHHHHHHhhcccccCCCCChhhHHHHHHHHHHhhhhhccCCCchhHH
Q 008865 199 EDVTGAEFRMFMDFLKSLSLFGEKAPTER-MKELIGIIEGQADLDAQFNVSDADHIDRLISCLYMALPFFLRGASGSKFL 277 (550)
Q Consensus 199 ~dVt~~EF~l~m~lL~sL~~~~~~~~~gr-~qeLv~~i~eqa~Ld~~f~~sD~d~idRli~cl~~Alp~fs~~v~st~f~ 277 (550)
.|-...--..-|.+.+.|.+.-..++-+- +--|+.++-- .-|++ .|..|.++.+|+.- |+.--++..|+
T Consensus 851 tDrD~vhRqta~nvI~Hl~Lnc~gtg~eda~IHLlNllwp-----NIle~-sPhvi~~~~Eg~e~----~~~~lg~g~~m 920 (975)
T COG5181 851 TDRDPVHRQTAMNVIRHLVLNCPGTGDEDAAIHLLNLLWP-----NILEP-SPHVIQSFDEGMES----FATVLGSGAMM 920 (975)
T ss_pred cccchHHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHhhh-----hccCC-CcHHHHHHHHHHHH----HHHHhccHHHH
Confidence 66666666677777777766532222110 1112232221 11222 24556666666654 44444568899
Q ss_pred HHHHhhhcc
Q 008865 278 NYLNKHIIP 286 (550)
Q Consensus 278 ~y~~~~IlP 286 (550)
+|+..-+|.
T Consensus 921 ~Yv~qGLFH 929 (975)
T COG5181 921 KYVQQGLFH 929 (975)
T ss_pred HHHHHhccC
Confidence 999988776
No 156
>cd07920 Pumilio Pumilio-family RNA binding domain. Puf repeats (also labelled PUM-HD or Pumilio homology domain) mediate sequence specific RNA binding in fly Pumilio, worm FBF-1 and FBF-2, and many other proteins such as vertebrate Pumilio. These proteins function as translational repressors in early embryonic development by binding to sequences in the 3' UTR of target mRNAs, such as the nanos response element (NRE) in fly Hunchback mRNA, or the point mutation element (PME) in worm fem-3 mRNA. Other proteins that contain Puf domains are also plausible RNA binding proteins. Yeast PUF1 (JSN1), for instance, appears to contain a single RNA-recognition motif (RRM) domain. Puf repeat proteins have been observed to function asymmetrically and may be responsible for creating protein gradients involved in the specification of cell fate and differentiation. Puf domains usually occur as a tandem repeat of 8 domains. This model encompasses all 8 tandem repeats. Some proteins may have fewer (canon
Probab=33.72 E-value=5.3e+02 Score=26.31 Aligned_cols=96 Identities=10% Similarity=0.120 Sum_probs=44.4
Q ss_pred chHHHHHhhhhhcccchhH-HHHHhhccccccccCcchhhhHHHHHHHHHhhchhHHHHHHHHHHH----HHHhhchHH-
Q 008865 66 SSRAVDAHLDLIEEEELGV-RVQAIRGLPLFCKDTPEYLSKIVDILVQLLAAEEIVERDAVHKALM----SLLRQDVKA- 139 (550)
Q Consensus 66 ~e~Ai~a~lDLcEDed~~I-R~qaik~Lp~lck~~~e~~~riaDVL~QLLqsdd~~E~~~v~~aL~----sllk~D~k~- 139 (550)
+...+.++++.|.++.-.. =......+..+|.+ .|-+++..-+.+.. .+.++..+-+.|. .|.+ |+.|
T Consensus 57 g~~vvq~~l~~~~~~~~~~i~~~~~~~~~~l~~~--~~g~~vlqkll~~~---~~~~~~~i~~~l~~~~~~L~~-d~~gn 130 (322)
T cd07920 57 GNYVIQKLFEHGTEEQRLQLLEKILGHVVRLSLD--MYGCRVIQKLLESI---SEEQISLLVKELRGHVVELVK-DQNGN 130 (322)
T ss_pred ccHHHHHHHHhCCHHHHHHHHHHHHHHHHHHccc--chhHHHHHHHHHhc---CHHHHHHHHHHHHHCHHHHhh-ccccc
Confidence 3344556666665443221 11222567778876 34444444444333 3555555555443 2222 3333
Q ss_pred -HHHHHHHhhccCCCCCChHHHHHHHHHHHhhhcccc
Q 008865 140 -SLTALFKHIGSVDEPSTDEFIREKVLSFIRDKVFPL 175 (550)
Q Consensus 140 -tLt~lf~qI~~~~e~~~eE~vREr~lkFl~~kl~~l 175 (550)
++..+|... .+..++.++..+..++..+
T Consensus 131 ~Vvq~~l~~~--------~~~~~~~i~~~l~~~~~~l 159 (322)
T cd07920 131 HVIQKCIEKF--------PPEDLQFIIDAFKGNCVAL 159 (322)
T ss_pred HHHHHHHHhC--------CHHHHHHHHHHHHHHHHHH
Confidence 344455443 2334555665555544443
No 157
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=33.51 E-value=1.8e+02 Score=34.32 Aligned_cols=68 Identities=22% Similarity=0.383 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHhhhcccchHHH------------HHHHHHHhhccccCCCCchhHHHHHHHHHHHhhcccccCCCCChhh
Q 008865 185 EMERHITDLIKKSLEDVTGAEF------------RMFMDFLKSLSLFGEKAPTERMKELIGIIEGQADLDAQFNVSDADH 252 (550)
Q Consensus 185 E~Ee~i~~~ikKvL~dVt~~EF------------~l~m~lL~sL~~~~~~~~~gr~qeLv~~i~eqa~Ld~~f~~sD~d~ 252 (550)
+-.|...+.+-++|+|.|.+|. +-|++.+-.++-.. +.-+|+.++.+-.+| |+ -+.+.
T Consensus 535 ~n~El~~Di~~Ril~dfs~~~It~~~k~l~~~dl~~~I~~li~~~~~~------q~~~Ll~~vID~~GL---fn-~~~~~ 604 (670)
T PF10395_consen 535 ENDELFLDISLRILQDFSKDEITQEIKKLNKVDLNNFINFLIKLNNNE------QLWQLLSLVIDSNGL---FN-WDMET 604 (670)
T ss_pred cchHHHHHHHHHHHHHhhHHHHHHHHHhhccccHHHHHHHHhccCCcc------chHHHHHHHhhcccc---cc-CCHHH
Confidence 3344555666666666655555 44666666554441 236788888877666 65 36678
Q ss_pred HHHHHHHHHH
Q 008865 253 IDRLISCLYM 262 (550)
Q Consensus 253 idRli~cl~~ 262 (550)
|+|+.+.+..
T Consensus 605 l~~L~~~Id~ 614 (670)
T PF10395_consen 605 LEKLSEIIDS 614 (670)
T ss_pred HHHHHHHHHH
Confidence 8888875544
No 158
>KOG2235 consensus Uncharacterized conserved protein [Function unknown]
Probab=33.26 E-value=4.6e+02 Score=30.92 Aligned_cols=119 Identities=16% Similarity=0.214 Sum_probs=63.7
Q ss_pred hHHHHHHHHHHHh--hcccccCCCCChhhHHHHHHHHHHhhhhhc---cCCC----chhHHHHHHhhhcccCCCC-Chh-
Q 008865 226 ERMKELIGIIEGQ--ADLDAQFNVSDADHIDRLISCLYMALPFFL---RGAS----GSKFLNYLNKHIIPVFDKL-PEE- 294 (550)
Q Consensus 226 gr~qeLv~~i~eq--a~Ld~~f~~sD~d~idRli~cl~~Alp~fs---~~v~----st~f~~y~~~~IlP~l~~L-~~~- 294 (550)
+| .+|++-+.++ ..|-..|.+.+..+||.|+.|++.|..=++ +.+. -.=+..| -..+.-.+..- ++.
T Consensus 605 qR-~kla~nl~~~lr~all~l~~aLn~ksiDdF~~a~~saaea~sl~lKKvDKK~er~ll~~~-rk~L~eQl~~~~ePal 682 (776)
T KOG2235|consen 605 QR-EKLAENLPEMLRDALLSLFAALNSKSIDDFHDAVYSAAEACSLALKKVDKKGERELLAKH-RKELHEQLCSQTEPAL 682 (776)
T ss_pred HH-HHHHHhhhHHHHHHHHHHHHHhcccchHHHHHHHHHHHHhhhHHHHHhhhHHHHHHHHHH-HHHHHHHHhcccchHH
Confidence 45 7777777766 335566778888999999999986654331 1111 0111111 01111111100 111
Q ss_pred -hhhhHHHHHHHhCCCCCchhhhhhhHHHHHHHHhhCCCCCCCCCccchHHHHHHHHHHHHhhhc
Q 008865 295 -RKLDLLKALAEISPYTTPQDSRQILPSVAVLLKKYMPLRKTGGEEMNFTYVECLLYTFHHLAHK 358 (550)
Q Consensus 295 -~kl~lLK~lAE~s~~~~~~~a~~~l~~i~~~L~~~mP~~~~~~~~l~fS~vEcLL~afh~L~~k 358 (550)
.-+-+|=+|+-+.. .-...+..+++.|..+|+..+|... =+||-++|.|.=+
T Consensus 683 lL~l~vllLf~ki~~-s~lhA~Gk~Vsaiiahik~kl~Edq-----------~alL~~yq~~vvt 735 (776)
T KOG2235|consen 683 LLHLSVLLLFAKITN-SPLHASGKFVSAIIAHIKDKLPEDQ-----------FALLQAYQKLVVT 735 (776)
T ss_pred HHHHHHHHHHHHHcC-CcccCccchHHHHHHHHHhhCChhH-----------HHHHHHHHhhhhh
Confidence 11222223333321 1223377788999999999988632 3788888888766
No 159
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=33.04 E-value=9.7e+02 Score=30.29 Aligned_cols=131 Identities=15% Similarity=0.061 Sum_probs=75.9
Q ss_pred HhcCC--HHHHHHHhhhhhHHhccCCCcchHHHHHhhhhhccc----chhHHHHHhhcccccccc--CcchhhhHHHHHH
Q 008865 40 AAKTS--LKAKQLAAQLIPRFFKFFPDLSSRAVDAHLDLIEEE----ELGVRVQAIRGLPLFCKD--TPEYLSKIVDILV 111 (550)
Q Consensus 40 ~~Kgs--~k~K~LAaQfI~kffk~FP~L~e~Ai~a~lDLcEDe----d~~IR~qaik~Lp~lck~--~~e~~~riaDVL~ 111 (550)
.+.+. ...+...++++-.+-.-=|-+-+..+.+++.+.+.. +..||+.|++=|-.+|.- ..-++..-.|.+.
T Consensus 620 ~as~~~~s~~~~~~~slLdl~~~~a~~~~e~~vs~l~~v~~~~e~~~~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~ 699 (1176)
T KOG1248|consen 620 LASDLDESVASFKTLSLLDLLIALAPVQTESQVSKLFTVDPEFENSSSTKVQKKAYRLLEELSSSPSGEGLVEQRIDDIF 699 (1176)
T ss_pred HhccchhhhhhHHHHHHHHHHHhhhccccchhHHHHHHhhHHhhccccHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHH
Confidence 44444 566777888888888888888888888877443322 456999999999999987 2224444444443
Q ss_pred H----HHhhchhHHHHHHHHHHHHHHhhchHHHHHHHHHhhc---c--CCCCCChHHHHHHHHHHHhh
Q 008865 112 Q----LLAAEEIVERDAVHKALMSLLRQDVKASLTALFKHIG---S--VDEPSTDEFIREKVLSFIRD 170 (550)
Q Consensus 112 Q----LLqsdd~~E~~~v~~aL~sllk~D~k~tLt~lf~qI~---~--~~e~~~eE~vREr~lkFl~~ 170 (550)
+ -+|+=...-..---++|..|++.-++....-++.-|. - .+....-...+..+|.||..
T Consensus 700 n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~k~I~EvIL~~Ke~n~~aR~~Af~lL~~i~~ 767 (1176)
T KOG1248|consen 700 NSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIPKLIPEVILSLKEVNVKARRNAFALLVFIGA 767 (1176)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcccccHHHHhhHHHHHHHHHH
Confidence 3 3344344444445566777777665333332222221 0 01111122356677777774
No 160
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=32.92 E-value=1.9e+02 Score=34.61 Aligned_cols=105 Identities=21% Similarity=0.201 Sum_probs=67.8
Q ss_pred cCCCcchHHHHH-----hhhhhcccchhHHHHHhhccccccccCcchhhh--HHHHHHHHHhhchhHHHHHHHHHHHHHH
Q 008865 61 FFPDLSSRAVDA-----HLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSK--IVDILVQLLAAEEIVERDAVHKALMSLL 133 (550)
Q Consensus 61 ~FP~L~e~Ai~a-----~lDLcEDed~~IR~qaik~Lp~lck~~~e~~~r--iaDVL~QLLqsdd~~E~~~v~~aL~sll 133 (550)
.+|.+.+.++.+ .--||.|+.+.||..+=+.+..+.+--+...-+ +-=.+.+|+..|....+.++-+++.+++
T Consensus 225 ~~~~~~~~~vk~elr~~~~~lc~d~~~~Vr~~~a~~l~~~a~~~~~~~~~s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~ 304 (759)
T KOG0211|consen 225 LYVSLPDDAVKRELRPIVQSLCQDDTPMVRRAVASNLGNIAKVLESEIVKSEVLPTLIQLLRDDQDSVREAAVESLVSLL 304 (759)
T ss_pred hccCCChHHHHHHHHHHHHhhccccchhhHHHHHhhhHHHHHHHHHHHHHhhccHHHhhhhhcchhhHHHHHHHHHHHHH
Confidence 344444455544 347999999999999999999998865543222 3334578888899999999999999998
Q ss_pred hh-chH-HHHHHHHHhhccCCCCCChHHHHHHHHH
Q 008865 134 RQ-DVK-ASLTALFKHIGSVDEPSTDEFIREKVLS 166 (550)
Q Consensus 134 k~-D~k-~tLt~lf~qI~~~~e~~~eE~vREr~lk 166 (550)
.. +.. .+-..++.-+. .....+...+|..+.+
T Consensus 305 ~l~~~~~d~~~~~~~~l~-~~~~d~~~~v~~~~~~ 338 (759)
T KOG0211|consen 305 DLLDDDDDVVKSLTESLV-QAVEDGSWRVSYMVAD 338 (759)
T ss_pred HhcCCchhhhhhhhHHHH-HHhcChhHHHHHHHhh
Confidence 87 222 22222222222 1112444556666555
No 161
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=32.55 E-value=38 Score=31.66 Aligned_cols=9 Identities=0% Similarity=0.154 Sum_probs=6.3
Q ss_pred Ccccccccc
Q 008865 467 KSVNLSWKE 475 (550)
Q Consensus 467 ~~i~lSW~~ 475 (550)
..+.++|..
T Consensus 104 r~l~V~~a~ 112 (144)
T PLN03134 104 RHIRVNPAN 112 (144)
T ss_pred EEEEEEeCC
Confidence 578888843
No 162
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=31.56 E-value=5.6e+02 Score=25.93 Aligned_cols=122 Identities=19% Similarity=0.282 Sum_probs=64.3
Q ss_pred cccccccCcchhhhHHHHHHHHHhhch----hHHHHHHHHHHHHHHhhchHHHHHHHHHhhccCCCCCChHHHHHHHHHH
Q 008865 92 LPLFCKDTPEYLSKIVDILVQLLAAEE----IVERDAVHKALMSLLRQDVKASLTALFKHIGSVDEPSTDEFIREKVLSF 167 (550)
Q Consensus 92 Lp~lck~~~e~~~riaDVL~QLLqsdd----~~E~~~v~~aL~sllk~D~k~tLt~lf~qI~~~~e~~~eE~vREr~lkF 167 (550)
+...| ++++-+....+.+-+++...+ +..-+.-...+...++........-++..... ..+...|.++|.=
T Consensus 136 ~~~a~-~~~~~~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~----~~~~~~k~~~l~a 210 (324)
T PF11838_consen 136 LSLAC-GDPECVAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKN----STSPEEKRRLLSA 210 (324)
T ss_dssp HHHHH-T-HHHHHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHT----TSTHHHHHHHHHH
T ss_pred HHHhc-cchhHHHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhc----cCCHHHHHHHHHh
Confidence 45567 777777777788888887533 23444555566677777666667777776663 2234456666642
Q ss_pred HhhhcccchhhhcCChHHHHHHHHHHHHhhhcc--cchHHHHHHHHHHhhccccCCCCchhHHHHHHHHHHHh
Q 008865 168 IRDKVFPLKAELLKPQEEMERHITDLIKKSLED--VTGAEFRMFMDFLKSLSLFGEKAPTERMKELIGIIEGQ 238 (550)
Q Consensus 168 l~~kl~~l~~e~l~~~eE~Ee~i~~~ikKvL~d--Vt~~EF~l~m~lL~sL~~~~~~~~~gr~qeLv~~i~eq 238 (550)
|. . .++++.-. ..+..+|.+ |...+...+|.-+.+ .+|.+| ..+.+++.+.
T Consensus 211 La----~------~~d~~~~~---~~l~~~l~~~~v~~~d~~~~~~~~~~------~~~~~~-~~~~~~~~~n 263 (324)
T PF11838_consen 211 LA----C------SPDPELLK---RLLDLLLSNDKVRSQDIRYVLAGLAS------SNPVGR-DLAWEFFKEN 263 (324)
T ss_dssp HT----T-------S-HHHHH---HHHHHHHCTSTS-TTTHHHHHHHHH-------CSTTCH-HHHHHHHHHC
T ss_pred hh----c------cCCHHHHH---HHHHHHcCCcccccHHHHHHHHHHhc------CChhhH-HHHHHHHHHH
Confidence 22 1 11333333 333444544 777776655543321 133455 5566777664
No 163
>PF08360 TetR_C_5: QacR-like protein, C-terminal region; InterPro: IPR013571 This entry represents the C-terminal domain found in the multidrug-binding transcription regulator QacR (P23217 from SWISSPROT) from Staphylococcus aureus, which is a member of the TetR (tetracycline-resistance) transcriptional regulator family of proteins. QacR is able to bind various environmental agents, which include a number of cationic lipophilic compounds, and thus regulate the transcription of QacA (P23215 from SWISSPROT), a multidrug efflux pump []. The C-terminal region of QacR contains a multifaceted, expansive drug-binding pocket, which is composed of several separate, but linked, binding sites []. The C-terminal domains of QacR and TetR share a multi-helical, interlocking structure.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0045892 negative regulation of transcription, DNA-dependent; PDB: 2G0E_E 1JUM_A 1RPW_D 1QVT_B 2HQ5_D 1JT0_B 2DTZ_E 1JUP_D 1JT6_D 1JUS_E ....
Probab=31.52 E-value=1.3e+02 Score=27.80 Aligned_cols=103 Identities=21% Similarity=0.280 Sum_probs=52.4
Q ss_pred HHHHHHHHHhhhhhhccccccChhhHHH-HHHHhcCCHHHHHHHhhhhhHHhccCCCcchHHHHHhhhhhcccchhHHHH
Q 008865 9 KQIEKLYEFGERLNEAKDKSQNVKDYEG-IIEAAKTSLKAKQLAAQLIPRFFKFFPDLSSRAVDAHLDLIEEEELGVRVQ 87 (550)
Q Consensus 9 ~~ie~LY~~~~~L~~akd~~~~~~~y~~-Il~~~Kgs~k~K~LAaQfI~kffk~FP~L~e~Ai~a~lDLcEDed~~IR~q 87 (550)
...||||..++-+.+.-+.+ -..+-.+ .....+...-.+++-+ +.-+|...|-++=++
T Consensus 18 t~~eKLy~~a~~~~~~i~~p-l~~a~~EF~~~~~~~~ev~~~l~~-i~~~~~~~~~~ilee------------------- 76 (131)
T PF08360_consen 18 TATEKLYGMAEHMLDDIQTP-LSKAGEEFYSNQSKNPEVLEKLNE-IRRKYLEFFQKILEE------------------- 76 (131)
T ss_dssp SHHHHHHHHHHHHHHSSSGG-GHHHHHHHHHHCSSSHHHHHHHHH-HHHHHHHHHHHHHHH-------------------
T ss_pred CHHHHHHHHHHHHHHHhccH-HHHHHHHHHHcccCCHHHHHHHHH-HHHHHHHHHHHHHHH-------------------
Confidence 35899999998776443322 1112222 2233444445555554 333443333222222
Q ss_pred HhhccccccccCcchhhhH----HHHHHHHHhhchhHHHHHHHHHHHHHH
Q 008865 88 AIRGLPLFCKDTPEYLSKI----VDILVQLLAAEEIVERDAVHKALMSLL 133 (550)
Q Consensus 88 aik~Lp~lck~~~e~~~ri----aDVL~QLLqsdd~~E~~~v~~aL~sll 133 (550)
+|+ --.|+.+|++-++.+ -|-|.|+.-..+..|+..+.+..+++|
T Consensus 77 GI~-~GEF~~~dv~~~a~il~s~l~GL~~~~~~~~~~e~~~l~~~ai~if 125 (131)
T PF08360_consen 77 GID-SGEFSIDDVEELAYILMSLLDGLSQWYYEKDKEELEALYRKAIDIF 125 (131)
T ss_dssp HHT-TTSS--STHHHHHHHHHHHHHHHHHTTTSS-HHHHHHHHHHHHHHH
T ss_pred HHH-cCcccCCCHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 221 246777777766553 344566666667777777777776665
No 164
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=31.52 E-value=33 Score=34.34 Aligned_cols=7 Identities=29% Similarity=0.187 Sum_probs=3.8
Q ss_pred hhhhhcC
Q 008865 453 SKPLHSK 459 (550)
Q Consensus 453 i~~l~~~ 459 (550)
|.+||++
T Consensus 23 ieDlFyK 29 (241)
T KOG0105|consen 23 IEDLFYK 29 (241)
T ss_pred HHHHHhh
Confidence 4556654
No 165
>PF11935 DUF3453: Domain of unknown function (DUF3453); InterPro: IPR021850 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 239 to 261 amino acids in length. ; PDB: 3ODS_A 3ODR_A 3O2Q_A 3O2T_A 3O2S_A 3GS3_A.
Probab=31.36 E-value=2.3e+02 Score=28.72 Aligned_cols=114 Identities=17% Similarity=0.244 Sum_probs=69.3
Q ss_pred CCChhhHHHHHHHHHHhhhhhccCCCch-------hHHHHHHhhhcccCCCCChhhhhhHHHHHHHhCCCC---------
Q 008865 247 VSDADHIDRLISCLYMALPFFLRGASGS-------KFLNYLNKHIIPVFDKLPEERKLDLLKALAEISPYT--------- 310 (550)
Q Consensus 247 ~sD~d~idRli~cl~~Alp~fs~~v~st-------~f~~y~~~~IlP~l~~L~~~~kl~lLK~lAE~s~~~--------- 310 (550)
..|+..+.+.|+|.-..-|..=+.+..+ ..++-+-+.|+..|+.-.+..|+..+|-+-.+.-..
T Consensus 4 d~d~~v~K~~I~~~~~iy~~~~~~i~~~~~~~~~W~~~~~lK~~Il~~~~~~~~gvk~~~iKFle~vIl~qs~~~~~~~~ 83 (239)
T PF11935_consen 4 DEDPAVVKRAIQCSTSIYPLVFRWICVNPSDEQLWESMNELKDRILSLWDSENPGVKLAAIKFLERVILVQSPGSSDSPP 83 (239)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHHHHHHGGGSSSHHHHHHHHHHHHHHHHHTS---TTS--
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCCCCcc
Confidence 4577788888888887777643332221 223344457777777666667887777554431110
Q ss_pred --------------------CchhhhhhhHHHHHHHHhhCCCCCCCCCccchHHHHHHHHHHHHhhhcCchhhhh
Q 008865 311 --------------------TPQDSRQILPSVAVLLKKYMPLRKTGGEEMNFTYVECLLYTFHHLAHKAPNATNS 365 (550)
Q Consensus 311 --------------------~~~~a~~~l~~i~~~L~~~mP~~~~~~~~l~fS~vEcLL~afh~L~~k~p~~l~~ 365 (550)
....-++--..+++.|+.++-.+ .+.-+.+-+++-++..|+++.|.++..
T Consensus 84 ~~~~~~d~SL~~vp~~Hp~l~~~~Le~Ea~~lL~~Ll~~l~~~-----~i~~~~~~a~insL~~Iak~RP~~~~~ 153 (239)
T PF11935_consen 84 RRGSPNDFSLSSVPPNHPLLNPQQLEAEANGLLDRLLDVLQSP-----HISSPLLTAIINSLSNIAKQRPQFMSR 153 (239)
T ss_dssp -GGGTTS--GGGS-TT-SSS-HHHHHHHHHHHHHHHHHHHC-T-----T--HHHHHHHHHHHHHHHHHSGGGHHH
T ss_pred ccccccCCCHHHcCCCCCcCCHHHHHHHHHHHHHHHHHHHhhc-----ccchHHHHHHHHHHHHHHHHhhHHHHH
Confidence 01111111234777888877543 388899999999999999999999754
No 166
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=31.23 E-value=3e+02 Score=32.57 Aligned_cols=156 Identities=21% Similarity=0.224 Sum_probs=0.0
Q ss_pred hcccchHHHHHHHHHHhhccccCCCCchhHHHHHHHHHHHhhc-ccccCCCCChhhHHHHHHHHHHhhhhhc--------
Q 008865 198 LEDVTGAEFRMFMDFLKSLSLFGEKAPTERMKELIGIIEGQAD-LDAQFNVSDADHIDRLISCLYMALPFFL-------- 268 (550)
Q Consensus 198 L~dVt~~EF~l~m~lL~sL~~~~~~~~~gr~qeLv~~i~eqa~-Ld~~f~~sD~d~idRli~cl~~Alp~fs-------- 268 (550)
+...-..+|..+|.+|..+.+. +..+| +.+..-+.+..+ +...+ +--|++.-+-.+++|-.
T Consensus 245 ~~gff~n~fvd~~~fLeel~lk---s~~eK-~~Ff~~L~~~l~~~pe~i------~~~kvlp~Ll~~~~~g~a~~~~ltp 314 (690)
T KOG1243|consen 245 LGGFFRNDFVDTLLFLEELRLK---SVEEK-QKFFSGLIDRLDNFPEEI------IASKVLPILLAALEFGDAASDFLTP 314 (690)
T ss_pred ccccccchHHHHHHHHHhcccC---cHHHH-HHHHHHHHHHHhhhhHHH------HHHHHHHHHHHHhhccccchhhhhH
Q ss_pred -----cCCCchhHHHHHHhhhcccCCCCChhhhhhHHHHHHHhCCCCCchh-hhhhhHHHHHHHHhhCCCCCCCCCccch
Q 008865 269 -----RGASGSKFLNYLNKHIIPVFDKLPEERKLDLLKALAEISPYTTPQD-SRQILPSVAVLLKKYMPLRKTGGEEMNF 342 (550)
Q Consensus 269 -----~~v~st~f~~y~~~~IlP~l~~L~~~~kl~lLK~lAE~s~~~~~~~-a~~~l~~i~~~L~~~mP~~~~~~~~l~f 342 (550)
+-...-+|-.++...|++.|..-+...|+.||.-+=+...+-+.+. -++++|.+-.-+...=|
T Consensus 315 l~k~~k~ld~~eyq~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~Lt~~~~~d~I~phv~~G~~DTn~----------- 383 (690)
T KOG1243|consen 315 LFKLGKDLDEEEYQVRIIPVLLKLFKSPDRQIRLLLLQYIEKYIDHLTKQILNDQIFPHVALGFLDTNA----------- 383 (690)
T ss_pred HHHhhhhccccccccchhhhHHHHhcCcchHHHHHHHHhHHHHhhhcCHHhhcchhHHHHHhhcccCCH-----------
Q ss_pred HHHHHHHHHHHHhhhc-CchhhhhccCcccccCCCCCccCcChhhhHHHHHHHHHHHHHH
Q 008865 343 TYVECLLYTFHHLAHK-APNATNSLCGYKIVTGQPSDRLGEDFSDCYKDFTERLTTVEDL 401 (550)
Q Consensus 343 S~vEcLL~afh~L~~k-~p~~l~~~cg~k~~Tgqpsd~lgeD~~~~~kdFr~RLqyl~~~ 401 (550)
+.+|=.|-++-.|+-| .++-++. +||.||+++
T Consensus 384 ~Lre~Tlksm~~La~kL~~~~Ln~---------------------------Ellr~~ar~ 416 (690)
T KOG1243|consen 384 TLREQTLKSMAVLAPKLSKRNLNG---------------------------ELLRYLARL 416 (690)
T ss_pred HHHHHHHHHHHHHHhhhchhhhcH---------------------------HHHHHHHhh
No 167
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=30.45 E-value=3.3e+02 Score=32.05 Aligned_cols=131 Identities=24% Similarity=0.318 Sum_probs=84.2
Q ss_pred ChhhHHHHHHHh---cCCHHHHHHHhhhhhHHhccCCCcchHHHHHhhhhhcccc---hhHHHHHhhccccccccCcch-
Q 008865 30 NVKDYEGIIEAA---KTSLKAKQLAAQLIPRFFKFFPDLSSRAVDAHLDLIEEEE---LGVRVQAIRGLPLFCKDTPEY- 102 (550)
Q Consensus 30 ~~~~y~~Il~~~---Kgs~k~K~LAaQfI~kffk~FP~L~e~Ai~a~lDLcEDed---~~IR~qaik~Lp~lck~~~e~- 102 (550)
....|..+|..+ +|.-+-|+-+-.-|..-.++-|+..|.|+..+-+.+||-+ ..||+=+| +.++.|.-
T Consensus 409 k~~s~l~FL~~~L~~eGg~eFK~~~Vdaisd~~~~~p~skEraLe~LC~fIEDcey~~I~vrIL~i-----LG~EgP~a~ 483 (898)
T COG5240 409 KKLSYLDFLGSSLLQEGGLEFKKYMVDAISDAMENDPDSKERALEVLCTFIEDCEYHQITVRILGI-----LGREGPRAK 483 (898)
T ss_pred HHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHhhcchhHHHHHHHHH-----hcccCCCCC
Confidence 444566665533 5999999999999999999999999999999999999875 34566555 45555432
Q ss_pred -hhh-HHHHHHHHHhhchhHHHHHHHHHHHHH-H-hhc--hHHHHHHHHHhhccCCCCCChHHHHHHH---HHHHhh
Q 008865 103 -LSK-IVDILVQLLAAEEIVERDAVHKALMSL-L-RQD--VKASLTALFKHIGSVDEPSTDEFIREKV---LSFIRD 170 (550)
Q Consensus 103 -~~r-iaDVL~QLLqsdd~~E~~~v~~aL~sl-l-k~D--~k~tLt~lf~qI~~~~e~~~eE~vREr~---lkFl~~ 170 (550)
=.| |--|+-- +.-|....+.++-.||.-+ | ..| .--++..+++.+.. .-||.+|+|+ ++|+..
T Consensus 484 ~P~~yvrhIyNR-~iLEN~ivRsaAv~aLskf~ln~~d~~~~~sv~~~lkRcln----D~DdeVRdrAsf~l~~~~~ 555 (898)
T COG5240 484 TPGKYVRHIYNR-LILENNIVRSAAVQALSKFALNISDVVSPQSVENALKRCLN----DQDDEVRDRASFLLRNMRL 555 (898)
T ss_pred CcchHHHHHHHH-HHHhhhHHHHHHHHHHHHhccCccccccHHHHHHHHHHHhh----cccHHHHHHHHHHHHhhhh
Confidence 123 4444433 3345666666666665322 1 112 23456667777763 3456788775 555554
No 168
>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis]
Probab=30.00 E-value=5.4e+02 Score=31.34 Aligned_cols=32 Identities=22% Similarity=0.430 Sum_probs=23.0
Q ss_pred ChhhhHHHHHHHHHH----HHHHHHHHHHHHHHHHh
Q 008865 383 DFSDCYKDFTERLTT----VEDLTRATMKKLTQGLA 414 (550)
Q Consensus 383 D~~~~~kdFr~RLqy----l~~~~q~yikkl~~~l~ 414 (550)
.+.+++++|-+||.- |++..+.-+.+-+++..
T Consensus 769 ~~~e~~~~~ea~leaer~rl~erk~~R~eerk~~~~ 804 (988)
T KOG2072|consen 769 EYEEKLKQFEARLEAERNRLAERKRARIEERKQAYY 804 (988)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 346889999999874 66777777777766443
No 169
>cd00159 RhoGAP RhoGAP: GTPase-activator protein (GAP) for Rho-like GTPases; GAPs towards Rho/Rac/Cdc42-like small GTPases. Small GTPases (G proteins) cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when bound to GDP. The Rho family of small G proteins, which includes Cdc42Hs, activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. G proteins generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. The RhoGAPs are one of the major classes of regulators of Rho G proteins.
Probab=29.61 E-value=74 Score=29.12 Aligned_cols=44 Identities=20% Similarity=0.382 Sum_probs=36.4
Q ss_pred HHhhhhhHHhccCCC--cchHHHHHhhhhhcccchhHHHHHhhccc
Q 008865 50 LAAQLIPRFFKFFPD--LSSRAVDAHLDLIEEEELGVRVQAIRGLP 93 (550)
Q Consensus 50 LAaQfI~kffk~FP~--L~e~Ai~a~lDLcEDed~~IR~qaik~Lp 93 (550)
-.|..+-+||++.|+ +..+..+.+++.+.+.+...|+.+++.+-
T Consensus 54 ~va~~lK~~l~~Lp~pli~~~~~~~~~~~~~~~~~~~~~~~~~~~i 99 (169)
T cd00159 54 DVASLLKLYLRELPEPLIPFELYDEFIELAKIEDEEERIEALKELL 99 (169)
T ss_pred HHHHHHHHHHHcCCCccCCHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 567899999999987 67788999999998888888887776553
No 170
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=29.53 E-value=1.2e+03 Score=29.05 Aligned_cols=183 Identities=24% Similarity=0.346 Sum_probs=100.2
Q ss_pred HHhhhhhHHh-ccCCCcc--hHHHHHhhh-hhcccchhHHHHHhhccccccccCc---chhhhHHHHHHH-HHhhchhHH
Q 008865 50 LAAQLIPRFF-KFFPDLS--SRAVDAHLD-LIEEEELGVRVQAIRGLPLFCKDTP---EYLSKIVDILVQ-LLAAEEIVE 121 (550)
Q Consensus 50 LAaQfI~kff-k~FP~L~--e~Ai~a~lD-LcEDed~~IR~qaik~Lp~lck~~~---e~~~riaDVL~Q-LLqsdd~~E 121 (550)
=|+-++.+|- =+|++-+ .+|++..+. ||+|.+..||++|.=+|-.|-.+++ +|++-.+=..+| ||---...|
T Consensus 481 rac~vl~~~~~~df~d~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~ne~E 560 (1010)
T KOG1991|consen 481 RACWVLSQFSSIDFKDPNNLSEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLSNEVE 560 (1010)
T ss_pred HHHHHHHHHHhccCCChHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHHhcc
Confidence 3555666666 5676644 567776665 4559999999998777766655444 544442222222 222223344
Q ss_pred HHHHHHHHHHHHhh----------chHHHHHHHHHhhccC---CCCCChHH-H-HHHHHHHHhhhcccc--hhhhcCChH
Q 008865 122 RDAVHKALMSLLRQ----------DVKASLTALFKHIGSV---DEPSTDEF-I-REKVLSFIRDKVFPL--KAELLKPQE 184 (550)
Q Consensus 122 ~~~v~~aL~sllk~----------D~k~tLt~lf~qI~~~---~e~~~eE~-v-REr~lkFl~~kl~~l--~~e~l~~~e 184 (550)
.+.+++.|-+++-. +=...|...|.++.-. +++.+||. + --=+|.=|.+-+..+ -+++ .+
T Consensus 561 nd~Lt~vme~iV~~fseElsPfA~eL~q~La~~F~k~l~~~~~~~~~~ddk~iaA~GiL~Ti~Til~s~e~~p~v---l~ 637 (1010)
T KOG1991|consen 561 NDDLTNVMEKIVCKFSEELSPFAVELCQNLAETFLKVLQTSEDEDESDDDKAIAASGILRTISTILLSLENHPEV---LK 637 (1010)
T ss_pred hhHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHhccCCCCccchHHHHHHHHHHHHHHHHHHHHhccHHH---HH
Confidence 45555544444332 2234566666666542 22223332 1 111111112222222 1233 35
Q ss_pred HHHHHHHHHHHhhhc-ccchHHHHHHHHHHhhccccCCCCchhHHHHHHHHHHH
Q 008865 185 EMERHITDLIKKSLE-DVTGAEFRMFMDFLKSLSLFGEKAPTERMKELIGIIEG 237 (550)
Q Consensus 185 E~Ee~i~~~ikKvL~-dVt~~EF~l~m~lL~sL~~~~~~~~~gr~qeLv~~i~e 237 (550)
+.|-.++..|.++|+ +++ +=++.+.+|+.++..+. +..+.-+=+|.+++.+
T Consensus 638 ~le~~~l~vi~~iL~~~i~-dfyeE~~ei~~~~t~~~-~~Isp~mW~ll~li~e 689 (1010)
T KOG1991|consen 638 QLEPIVLPVIGFILKNDIT-DFYEELLEIVSSLTFLS-KEISPIMWGLLELILE 689 (1010)
T ss_pred HHHHHHHHHHHHHHHHhhH-HHHHHHHHHHhhhhhhh-cccCHHHHHHHHHHHH
Confidence 778888899999986 554 33467888999888774 2334445778888876
No 171
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=28.81 E-value=8.8e+02 Score=27.32 Aligned_cols=201 Identities=20% Similarity=0.253 Sum_probs=102.0
Q ss_pred HHHHHHHHHHHHhhchHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhhhcccchhhhcCChHHHHHHHHHHHHhhhccc
Q 008865 122 RDAVHKALMSLLRQDVKASLTALFKHIGSVDEPSTDEFIREKVLSFIRDKVFPLKAELLKPQEEMERHITDLIKKSLEDV 201 (550)
Q Consensus 122 ~~~v~~aL~sllk~D~k~tLt~lf~qI~~~~e~~~eE~vREr~lkFl~~kl~~l~~e~l~~~eE~Ee~i~~~ikKvL~dV 201 (550)
...-=.-|+.+++.=+...|..++.++.. .. ...|.-.+ +-|...+ +.++-.+|.+.|+. .++
T Consensus 309 ~~~~f~~lv~~lR~~~~e~l~~l~~~~~~-~~----~~~r~~~~----Dal~~~G------T~~a~~~i~~~i~~--~~~ 371 (574)
T smart00638 309 AAAKFLRLVRLLRTLSEEQLEQLWRQLYE-KK----KKARRIFL----DAVAQAG------TPPALKFIKQWIKN--KKI 371 (574)
T ss_pred hHHHHHHHHHHHHhCCHHHHHHHHHHHHh-CC----HHHHHHHH----HHHHhcC------CHHHHHHHHHHHHc--CCC
Confidence 33344557788888888888888888862 11 23333333 2222222 66777788888766 356
Q ss_pred chHHHH-HHHHHHhhccccCCCCchhHHHHHHHHHHHhhcccccCCCCChhhHHH--HHHHHHHhhhhhccCCCc-----
Q 008865 202 TGAEFR-MFMDFLKSLSLFGEKAPTERMKELIGIIEGQADLDAQFNVSDADHIDR--LISCLYMALPFFLRGASG----- 273 (550)
Q Consensus 202 t~~EF~-l~m~lL~sL~~~~~~~~~gr~qeLv~~i~eqa~Ld~~f~~sD~d~idR--li~cl~~Alp~fs~~v~s----- 273 (550)
++.|.. +++.++..++. |. .++++.+.+.+..+... ..+ .+.. ++....++-.++......
T Consensus 372 ~~~ea~~~~~~~~~~~~~-----Pt---~~~l~~l~~l~~~~~~~--~~~-~l~~sa~l~~~~lv~~~c~~~~~~~~~~~ 440 (574)
T smart00638 372 TPLEAAQLLAVLPHTARY-----PT---EEILKALFELAESPEVQ--KQP-YLRESALLAYGSLVRRYCVNTPSCPDFVL 440 (574)
T ss_pred CHHHHHHHHHHHHHhhhc-----CC---HHHHHHHHHHhcCcccc--ccH-HHHHHHHHHHHHHHHHHhcCCCCCChhhH
Confidence 766653 45555554433 22 66777777655443221 111 1211 122222222223222111
Q ss_pred hhHHHHHHhhhcccCCCCChhhhhhHHHHHHHhCCCCCchhhhhhhHHHHHHHHhhCCCCCCCCCccchHHHHHHHHHHH
Q 008865 274 SKFLNYLNKHIIPVFDKLPEERKLDLLKALAEISPYTTPQDSRQILPSVAVLLKKYMPLRKTGGEEMNFTYVECLLYTFH 353 (550)
Q Consensus 274 t~f~~y~~~~IlP~l~~L~~~~kl~lLK~lAE~s~~~~~~~a~~~l~~i~~~L~~~mP~~~~~~~~l~fS~vEcLL~afh 353 (550)
..|+.|+.+.+--..++=+++.++=.||.|.-+. .+.+...|..|++... +.-.+-.+ +.++||-
T Consensus 441 ~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g-----------~~~~i~~l~~~l~~~~---~~~~~iR~-~Av~Alr 505 (574)
T smart00638 441 EELLKYLHELLQQAVSKGDEEEIQLYLKALGNAG-----------HPSSIKVLEPYLEGAE---PLSTFIRL-AAILALR 505 (574)
T ss_pred HHHHHHHHHHHHHHHhcCCchheeeHHHhhhccC-----------ChhHHHHHHHhcCCCC---CCCHHHHH-HHHHHHH
Confidence 3455555554433333334455666777776442 2455566777776211 11223333 3356666
Q ss_pred HhhhcCchhhhh
Q 008865 354 HLAHKAPNATNS 365 (550)
Q Consensus 354 ~L~~k~p~~l~~ 365 (550)
.++.+.|....+
T Consensus 506 ~~a~~~p~~v~~ 517 (574)
T smart00638 506 NLAKRDPRKVQE 517 (574)
T ss_pred HHHHhCchHHHH
Confidence 777777776543
No 172
>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT. Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A.
Probab=28.66 E-value=73 Score=21.39 Aligned_cols=26 Identities=27% Similarity=0.367 Sum_probs=20.6
Q ss_pred HHHHHhhccccccccCcchhhhHHHHHHHHHh
Q 008865 84 VRVQAIRGLPLFCKDTPEYLSKIVDILVQLLA 115 (550)
Q Consensus 84 IR~qaik~Lp~lck~~~e~~~riaDVL~QLLq 115 (550)
||..|++.|-.++- ++..+.|.++|+
T Consensus 1 VR~~Aa~aLg~igd------~~ai~~L~~~L~ 26 (27)
T PF03130_consen 1 VRRAAARALGQIGD------PRAIPALIEALE 26 (27)
T ss_dssp HHHHHHHHHGGG-S------HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCC------HHHHHHHHHHhc
Confidence 78899999999886 578888888775
No 173
>PF05084 GRA6: Granule antigen protein (GRA6); InterPro: IPR008119 Toxoplasma gondii is an obligate intracellular apicomplexan protozoan parasite, with a complex lifestyle involving varied hosts []. It has two phases of growth: an intestinal phase in feline hosts, and an extra-intestinal phase in other mammals. Oocysts from infected cats develop into tachyzoites, and eventually, bradyzoites and zoitocysts in the extraintestinal host []. Transmission of the parasite occurs through contact with infected cats or raw/undercooked meat; in immunocompromised individuals, it can cause severe and often lethal toxoplasmosis. Acute infection in healthy humans can sometimes also cause tissue damage []. The protozoan utilises a variety of secretory and antigenic proteins to invade a host and gain access to the intracellular environment []. These originate from distinct organelles in the T. gondii cell termed micronemes, rhoptries, and dense granules. They are released at specific times during invasion to ensure the proteins are allocated to their correct target destinations []. Dense granule antigens (GRAs) are released from the T. gondii tachyzoite while still encapsulated in a host vacuole. Gra6, one of these moieties, is associated with the parasitophorous vacuole []. It possesses a hydrophobic central region flanked by two hydrophilic domains, and is present as a single copy gene in the Toxoplasma gondii genome []. Gra6 shares a similar function with Gra2, in that it is rapidly targeted to a network of membranous tubules that connect with the vacuolar membrane []. Indeed, these two proteins, together with Gra4, form a multimeric complex that stabilises the parasite within the vacuole.
Probab=27.82 E-value=55 Score=32.07 Aligned_cols=7 Identities=57% Similarity=0.824 Sum_probs=3.8
Q ss_pred CCCCCCC
Q 008865 495 SINGSGN 501 (550)
Q Consensus 495 ~~~g~~~ 501 (550)
++.|+.|
T Consensus 183 sgdgG~~ 189 (215)
T PF05084_consen 183 SGDGGGN 189 (215)
T ss_pred CCCCCCC
Confidence 4555555
No 174
>PF02020 W2: eIF4-gamma/eIF5/eIF2-epsilon; InterPro: IPR003307 This entry represents the W2 domain (two invariant tryptophans) and is a region of ~165 amino acids which is found in the C terminus of the following eIFs [, , , ]: Eukaryotic translation initiation factor 2B epsilon (eIF-2B-epsilon) Eukaryotic translation initiation factor 4 gamma (eIF-4-gamma) Eukaryotic translation initiation factor 5 (eIF-5), a GTPase-activating protein (GAP) specific for eIF2 Translation initiation is a sophisticated, well regulated and highly coordinated cellular process in eukaryotes, in which at least 11 eukayrotic initiation factors (eIFs) are included []. The W2 domain has a globular fold and is exclusively composed out of alpha-helices [, , ]. The structure can be divided into a structural C-terminal core onto which the two N-terminal helices are attached. The core contains two aromatic/acidic residue-rich regions (AA boxes), which are important for mediating protein-protein interactions. For example, the W2 domain of H. sapiens eIF5 binds eIF2-beta, eIF3 and eIF1 [], and therefore plays an important role in multifactor complex assembly. The entry covers the entire W2 domain.; GO: 0005488 binding; PDB: 3D3M_A 3L6A_A 1PAQ_A 2FUL_D 2IU1_A 1UG3_B 3JUI_A.
Probab=27.76 E-value=1.2e+02 Score=25.67 Aligned_cols=41 Identities=24% Similarity=0.472 Sum_probs=29.7
Q ss_pred HHHHhhccccccccCcchhhhHHHHHHHHHhhchhHHHHHH
Q 008865 85 RVQAIRGLPLFCKDTPEYLSKIVDILVQLLAAEEIVERDAV 125 (550)
Q Consensus 85 R~qaik~Lp~lck~~~e~~~riaDVL~QLLqsdd~~E~~~v 125 (550)
.+..+.+|-.+|.+++...+.+.=||.+|...|=-.|-...
T Consensus 4 Q~~~L~ale~~~~~~~~~~~~~~~il~~LYd~Dil~Eeail 44 (84)
T PF02020_consen 4 QVDLLNALEEFCAENPNLMPLFPKILQQLYDEDILEEEAIL 44 (84)
T ss_dssp HHHHHHHHHHHHHHTCGHGGHHHHHHHHHHHTTSS-HHHHH
T ss_pred HHHHHHHHHHHHHhCccHHHHHHHHHHHHhhhhhccHHHHH
Confidence 35677788888888888888888888888877665554443
No 175
>COG1498 SIK1 Protein implicated in ribosomal biogenesis, Nop56p homolog [Translation, ribosomal structure and biogenesis]
Probab=27.61 E-value=1.3e+02 Score=33.18 Aligned_cols=18 Identities=17% Similarity=0.287 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHhhhcccc
Q 008865 185 EMERHITDLIKKSLEDVT 202 (550)
Q Consensus 185 E~Ee~i~~~ikKvL~dVt 202 (550)
++++||-+.+..+-..+|
T Consensus 228 ~l~~Yi~~~M~~vAPNlt 245 (395)
T COG1498 228 QLEEYIESKMSEIAPNLT 245 (395)
T ss_pred HHHHHHHHHHHHhCccHH
Confidence 444444444444444444
No 176
>PF14675 FANCI_S1: FANCI solenoid 1; PDB: 3S51_A 3S4Z_A 3S4W_A.
Probab=27.55 E-value=6.7e+02 Score=25.53 Aligned_cols=142 Identities=18% Similarity=0.254 Sum_probs=76.3
Q ss_pred ChhhHHHHHHHhcCCHHHHHHHhhhhhHHhccCCCcchHHHHHhhhhhcccchhHHHHHhhccccccccCcchhhhHHHH
Q 008865 30 NVKDYEGIIEAAKTSLKAKQLAAQLIPRFFKFFPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDI 109 (550)
Q Consensus 30 ~~~~y~~Il~~~Kgs~k~K~LAaQfI~kffk~FP~L~e~Ai~a~lDLcEDed~~IR~qaik~Lp~lck~~~e~~~riaDV 109 (550)
+.+-|+-+|.......=....|++.|.+..-++|.+....+-++.++|=| +|+.=-.-|. .|..=+-.+
T Consensus 5 r~~v~~~~l~~l~~~~l~~k~~~dii~~L~~El~~lp~~~Lv~l~~~~v~--------~i~~g~~~~~---~~ldLlP~~ 73 (223)
T PF14675_consen 5 RFKVYKCCLKLLESGDLSEKQASDIIGRLMLELHSLPGEHLVELAELCVD--------SIRSGDNKNG---KWLDLLPKC 73 (223)
T ss_dssp HHHHHHHHHHHHHHS---HHHHHHHHHHHHHHGGG--HHHHHHHHHHHHH--------HHHS---S-S---TTTTHHHHH
T ss_pred HHHHHHHHHHHcccCCcCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH--------HHHcCCcccc---hHHHHHHHH
Confidence 45668888998884444446999999999999999999988888888753 3332222222 233334445
Q ss_pred HHHHHhhchh-------HHHHHHHHHHHHHHhh----chHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhhhcccchhh
Q 008865 110 LVQLLAAEEI-------VERDAVHKALMSLLRQ----DVKASLTALFKHIGSVDEPSTDEFIREKVLSFIRDKVFPLKAE 178 (550)
Q Consensus 110 L~QLLqsdd~-------~E~~~v~~aL~sllk~----D~k~tLt~lf~qI~~~~e~~~eE~vREr~lkFl~~kl~~l~~e 178 (550)
|.+|-..+.- +-.+..++.+.++.++ .--..+++||..+. +
T Consensus 74 Ls~L~~~~~i~~~~~~~sG~eyK~~iI~~lc~~~W~~~~l~~l~~mfrd~~-------------------------L--- 125 (223)
T PF14675_consen 74 LSALSASESINYNGGELSGEEYKKQIINSLCSSRWPPQILIQLASMFRDVP-------------------------L--- 125 (223)
T ss_dssp HHHHHT-S--SSSS----HHHHHHHHHHHHHHS---TTTHHHHHHHGGGS------------------------------
T ss_pred HHHHhcCcccccccccccchHHHHHHHHHHHhCcCcHHHHHHHHHHHhcCC-------------------------C---
Confidence 5554333221 2234556666666665 22333444444442 1
Q ss_pred hcCChHHHHHHHHHHHHhhhcccchHHHHHH-HHHHh
Q 008865 179 LLKPQEEMERHITDLIKKSLEDVTGAEFRMF-MDFLK 214 (550)
Q Consensus 179 ~l~~~eE~Ee~i~~~ikKvL~dVt~~EF~l~-m~lL~ 214 (550)
+.+|.+ .+++-+.+.|.++..+|..-| -++|.
T Consensus 126 ---s~~e~~-~vv~Kv~~~l~~l~l~elPpLvyQLL~ 158 (223)
T PF14675_consen 126 ---SKEELE-FVVEKVLSMLKKLDLQELPPLVYQLLL 158 (223)
T ss_dssp ----HHHHH-HHHHHHHHHHTTS-GGGHHHHHHHHHH
T ss_pred ---CHHHHH-HHHHHHHHHHhcCChhhccHHHHHHHH
Confidence 123333 555555677777888888643 44443
No 177
>cd03562 CID CID (CTD-Interacting Domain) domain family; CID is present in several RNA-processing factors such as Pcf11 and Nrd1. Pcf11 is a conserved and essential subunit of the yeast cleavage factor IA, which is required for polyadenylation-dependent 3'-RNA processing and transcription termination. Nrd1 is implicated in polyadenylation-independent 3'-RNA processing. CID binds tightly to the carboxy-terminal domain (CTD) of RNA polymerase (Pol) II. During transcription, Pol II synthesizes eukaryotic messenger RNA. Transcription is coupled to RNA processing through the CTD, which consists of up to 52 repeats of the sequence Tyr 1-Ser 2-Pro 3-Thr 4-Ser 5-Pro 6-Ser 7. CID contains eight alpha-helices in a right-handed superhelical arrangement, which closely resembles that of the VHS domains and ARM (Armadillo) repeat proteins, except for its two amino-terminal helices.
Probab=27.26 E-value=1.4e+02 Score=26.24 Aligned_cols=80 Identities=18% Similarity=0.184 Sum_probs=47.4
Q ss_pred HHHHhhccccccccCcchhhhHHHHHHHHHhhchhHHHHHHHHHHHHHHhh-------chHHHHHHHHHhhccCCCCCCh
Q 008865 85 RVQAIRGLPLFCKDTPEYLSKIVDILVQLLAAEEIVERDAVHKALMSLLRQ-------DVKASLTALFKHIGSVDEPSTD 157 (550)
Q Consensus 85 R~qaik~Lp~lck~~~e~~~riaDVL~QLLqsdd~~E~~~v~~aL~sllk~-------D~k~tLt~lf~qI~~~~e~~~e 157 (550)
=...|..|..+|.++..+-+.|++++.+.+..-.+.-.-.+==-+.++++. .....+..+|.+... ..+
T Consensus 17 S~~~I~~lt~~a~~~~~~a~~iv~~i~~~i~~~~~~~KL~~LYL~dsIvkn~~~~~~~~~~~~~~~~f~~~~~----~~~ 92 (114)
T cd03562 17 SQPSIQTLTKLAIENRKHAKEIVEIIEKHIKKCPPEQKLPLLYLLDSIVKNVGRKYKEFFSEFLVPLFLDAYE----KVD 92 (114)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHH----hCC
Confidence 346788888999999899999999998888876664333222222233322 222233444444432 445
Q ss_pred HHHHHHHHHHH
Q 008865 158 EFIREKVLSFI 168 (550)
Q Consensus 158 E~vREr~lkFl 168 (550)
+.+|+++.+-+
T Consensus 93 ~~~r~kl~rl~ 103 (114)
T cd03562 93 EKTRKKLERLL 103 (114)
T ss_pred HHHHHHHHHHH
Confidence 66676666543
No 178
>KOG2945 consensus Predicted RNA-binding protein [General function prediction only]
Probab=27.06 E-value=65 Score=35.17 Aligned_cols=10 Identities=50% Similarity=0.933 Sum_probs=6.5
Q ss_pred CCCCCCCCCC
Q 008865 541 GARGRGRGYR 550 (550)
Q Consensus 541 g~~gr~~~~~ 550 (550)
|++|+|||+|
T Consensus 161 ~r~G~Grg~~ 170 (365)
T KOG2945|consen 161 GRQGGGRGNW 170 (365)
T ss_pred CCCCccCCCC
Confidence 3467777776
No 179
>PHA02713 hypothetical protein; Provisional
Probab=26.39 E-value=2.3e+02 Score=32.26 Aligned_cols=104 Identities=9% Similarity=0.064 Sum_probs=62.4
Q ss_pred hhhHHHHHHHhc--CCHHHHHHHhhhhhHHhccCCCcchHHHHHhhhhhcccchhHHHHHhhccccccccCcchhhhHHH
Q 008865 31 VKDYEGIIEAAK--TSLKAKQLAAQLIPRFFKFFPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVD 108 (550)
Q Consensus 31 ~~~y~~Il~~~K--gs~k~K~LAaQfI~kffk~FP~L~e~Ai~a~lDLcEDed~~IR~qaik~Lp~lck~~~e~~~riaD 108 (550)
.+.-+.+|.++. .=+..|.++++|+.+.+.--==+.=-++=+.+. |.+-...++.-..+.++.+++. +|++.=..+
T Consensus 93 ~~nv~~ll~aA~~lqi~~l~~~C~~~l~~~l~~~NCl~i~~~~~~~~-~~~L~~~a~~~i~~~f~~v~~~-~ef~~L~~~ 170 (557)
T PHA02713 93 SMNVIDVLKCADYLLIDDLVTDCESYIKDYTNHDTCIYMYHRLYEMS-HIPIVKYIKRMLMSNIPTLITT-DAFKKTVFE 170 (557)
T ss_pred HHHHHHHHHHHHHHCHHHHHHHHHHHHHhhCCccchHHHHHHHHhcc-chHHHHHHHHHHHHHHHHHhCC-hhhhhCCHH
Confidence 344566777766 778899999999987765211111111111111 1122234566677888888874 588877888
Q ss_pred HHHHHHhhchh----HHHHHHHHHHHHHHhhch
Q 008865 109 ILVQLLAAEEI----VERDAVHKALMSLLRQDV 137 (550)
Q Consensus 109 VL~QLLqsdd~----~E~~~v~~aL~sllk~D~ 137 (550)
-|.++|.+|+. .|-++. +|++.-++.|+
T Consensus 171 ~l~~lL~~d~~l~v~~Ee~v~-eav~~W~~~d~ 202 (557)
T PHA02713 171 ILFDIISTNDNVYLYREGYKV-TILLKWLEYNY 202 (557)
T ss_pred HHHHHhccccccCCCcHHHHH-HHHHHHHhcCH
Confidence 88889988762 354444 44555555543
No 180
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=26.31 E-value=88 Score=36.14 Aligned_cols=11 Identities=0% Similarity=0.244 Sum_probs=8.7
Q ss_pred CcccccccccC
Q 008865 467 KSVNLSWKEAT 477 (550)
Q Consensus 467 ~~i~lSW~~~~ 477 (550)
..|.++|..+.
T Consensus 297 r~I~V~~Akp~ 307 (578)
T TIGR01648 297 SEIEVTLAKPV 307 (578)
T ss_pred EEEEEEEccCC
Confidence 69999998653
No 181
>PRK14507 putative bifunctional 4-alpha-glucanotransferase/malto-oligosyltrehalose synthase; Provisional
Probab=26.08 E-value=1.7e+03 Score=29.63 Aligned_cols=167 Identities=14% Similarity=0.180 Sum_probs=94.2
Q ss_pred ccchHHH-HHHHHHHhhccccCCCCchhHHHHHHHHHHHhhcccccCCCCChhhHHHHHHHHHHhhhhhccCCCchhHHH
Q 008865 200 DVTGAEF-RMFMDFLKSLSLFGEKAPTERMKELIGIIEGQADLDAQFNVSDADHIDRLISCLYMALPFFLRGASGSKFLN 278 (550)
Q Consensus 200 dVt~~EF-~l~m~lL~sL~~~~~~~~~gr~qeLv~~i~eqa~Ld~~f~~sD~d~idRli~cl~~Alp~fs~~v~st~f~~ 278 (550)
|+|.... ..+.+++.++|.|.|..+. ......|..+|+..+.-.+...| ......+.
T Consensus 1205 D~t~~~lr~al~e~la~fPVYRtY~~~-----------------~~~~~~d~~~i~~a~~~Ar~~~~-----~~~~~~~~ 1262 (1693)
T PRK14507 1205 DFTRNALRRALAEIVARFPVYRTYLPP-----------------TEVSAEDVRYIEGAVRKAKRRSR-----LPDRSVHD 1262 (1693)
T ss_pred cCCHHHHHHHHHHHHHcCCccccCCCC-----------------CCCCHHHHHHHHHHHHHHHhhCC-----ccchHHHH
Confidence 5665555 3588999999999877632 12223444555655544433211 11235667
Q ss_pred HHHhhhcccCC--CCChhhhhhHHHHHHHhCCCCCchhhhhh---hHHHHHHHHh--hCCCCCCCCCccchHHHHHHHHH
Q 008865 279 YLNKHIIPVFD--KLPEERKLDLLKALAEISPYTTPQDSRQI---LPSVAVLLKK--YMPLRKTGGEEMNFTYVECLLYT 351 (550)
Q Consensus 279 y~~~~IlP~l~--~L~~~~kl~lLK~lAE~s~~~~~~~a~~~---l~~i~~~L~~--~mP~~~~~~~~l~fS~vEcLL~a 351 (550)
|+-.-++.... .++++.+-..+....-+-++|++..|+-+ .=..|.-|+. -+...|. .+-.| .=+
T Consensus 1263 ~i~~~L~~~~~~~~~~~~~~~~~~~f~~rfQQ~tgpvmAKgvEDTaFYry~rL~slNEVGg~P~---~fg~~-----~~~ 1334 (1693)
T PRK14507 1263 FVRDVLLGRIDLGGAGHPLRQLVLRFRRRFQQFTAPVMAKSLEDTLFYRYVRLVSLNEVGGDPG---EFGLD-----AEH 1334 (1693)
T ss_pred HHHHHHcCCcccccccchhhHHHHHHHHHHHHhhHHHHHHHhhhhhhhhhhhhhhhccCCCCcc---ccCCC-----HHH
Confidence 77665554332 24443333334444445556777665433 3446666654 3333221 01111 235
Q ss_pred HHHhhhc----CchhhhhccCcccccCCCCCccCcChhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 008865 352 FHHLAHK----APNATNSLCGYKIVTGQPSDRLGEDFSDCYKDFTERLTTVEDLTRATMKKLT 410 (550)
Q Consensus 352 fh~L~~k----~p~~l~~~cg~k~~Tgqpsd~lgeD~~~~~kdFr~RLqyl~~~~q~yikkl~ 410 (550)
||+.... .|..|+.. =|. | .+|-+|-|+||..|++.-......|+
T Consensus 1335 FH~~~~~R~~~~P~~m~at-----sTH--------D-tKRgEDvRARl~vLSE~p~eW~~~v~ 1383 (1693)
T PRK14507 1335 FHALNAARARDWPHAMLAT-----STH--------D-TKRSEDVRARILVLSEMPEEWRLALD 1383 (1693)
T ss_pred HHHHHHHHHHhCCccccch-----hhc--------c-ccccHHHHHHHHHHhcCHHHHHHHHH
Confidence 7776544 68888652 132 5 68899999999999999888766655
No 182
>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.91 E-value=1.6e+02 Score=33.98 Aligned_cols=82 Identities=22% Similarity=0.300 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHhhhcCchhhhhccCcccccCCCCCccCcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHhh
Q 008865 343 TYVECLLYTFHHLAHKAPNATNSLCGYKIVTGQPSDRLGEDFSDCYKDFTERLTTVEDLTRATMKKLTQGLADHNKEMAA 422 (550)
Q Consensus 343 S~vEcLL~afh~L~~k~p~~l~~~cg~k~~Tgqpsd~lgeD~~~~~kdFr~RLqyl~~~~q~yikkl~~~l~~~~K~~~~ 422 (550)
.-+|+++|++++|+.|-...|.++ +| + .++.+-.....=++++....+..+.+|--+|..
T Consensus 29 ~~~~~~~FaaqTlr~Ki~~~F~~L--------p~-~----~~~slrdsl~thl~~l~~~~~~i~tQL~vavA~------- 88 (559)
T KOG2081|consen 29 CDVEALLFAAQTLRNKIQYDFSEL--------PP-L----THASLRDSLITHLKELHDHPDVIRTQLAVAVAA------- 88 (559)
T ss_pred chHHHHHHHHHHHHHHHHhhHHhc--------Cc-c----hhHHHHHHHHHHHHHHHhCCchHHHHHHHHHHH-------
Confidence 557999999999999988888764 22 1 222222223345666666666666666666644
Q ss_pred cCChHHHHHHHhhhccchhhhhhh--cc-HHHHhhhhhcCCCC
Q 008865 423 AKTDEAKEKIKTQKQNTTTGLRTC--NN-ILAMSKPLHSKTPS 462 (550)
Q Consensus 423 ~k~de~k~k~~~~~q~~~~aL~~~--~N-I~~li~~l~~~pPs 462 (550)
-|++.. +| |..+++.+.++||+
T Consensus 89 ------------------Lal~~~~W~n~I~e~v~~~~~~~~~ 113 (559)
T KOG2081|consen 89 ------------------LALHMPEWVNPIFELVRALSNKHPA 113 (559)
T ss_pred ------------------HHHHhHhhcchHHHHHHHhhcCCcc
Confidence 245554 58 99999999999988
No 183
>COG3280 TreY Maltooligosyl trehalose synthase [Carbohydrate transport and metabolism]
Probab=25.43 E-value=1.3e+03 Score=28.14 Aligned_cols=155 Identities=14% Similarity=0.155 Sum_probs=83.9
Q ss_pred HHHHHHHhhccccCCCCchhHHHHHHHHHHHhhcccccCCCCChhhHHHHHHHHHHhhhhhccCCCchhHHHHHHhhhcc
Q 008865 207 RMFMDFLKSLSLFGEKAPTERMKELIGIIEGQADLDAQFNVSDADHIDRLISCLYMALPFFLRGASGSKFLNYLNKHIIP 286 (550)
Q Consensus 207 ~l~m~lL~sL~~~~~~~~~gr~qeLv~~i~eqa~Ld~~f~~sD~d~idRli~cl~~Alp~fs~~v~st~f~~y~~~~IlP 286 (550)
..+.++|.++|.|.|..+. ...+.+|+..|.+.+.-.+.-.| ++. ..-+.| ..++++
T Consensus 432 ~Ai~ella~~pvYRTY~~~-----------------~G~~~~d~~~i~~~~~~ak~~~~----~~~-~~~~~~-l~~~l~ 488 (889)
T COG3280 432 RALAELLAAFPVYRTYADY-----------------EGIGASDPCILREAVEEAKALAP----GLD-LIAAAF-LSRVLG 488 (889)
T ss_pred HHHHHHHHhCcchhcccCc-----------------cCCCcccHHHHHHHHHHHhhcCC----ccC-hHHHHH-HHHhcC
Confidence 5678888888888876543 12345677677766654333222 111 111222 223443
Q ss_pred cCCCCChhhhhhH--HHHHHHhCCCCCchhh---hhhhHHHHHHHHh--hCCCCCCCCCccchHHHHHHHHHHHHhhhc-
Q 008865 287 VFDKLPEERKLDL--LKALAEISPYTTPQDS---RQILPSVAVLLKK--YMPLRKTGGEEMNFTYVECLLYTFHHLAHK- 358 (550)
Q Consensus 287 ~l~~L~~~~kl~l--LK~lAE~s~~~~~~~a---~~~l~~i~~~L~~--~mP~~~~~~~~l~fS~vEcLL~afh~L~~k- 358 (550)
.+.+.+++++. +--|.++ |++..| ++..=..|.-|+. .+...|. -+-+|. =-||+.+..
T Consensus 489 --ge~~~~~~~~~~f~~RfQQl---sgpv~AK~VEDT~fYr~~rLlSlNEVG~dP~---~F~~s~-----~~FH~~~~~R 555 (889)
T COG3280 489 --GEPAGDRELRAEFAVRFQQL---SGPVMAKAVEDTTFYRYARLLSLNEVGGDPR---RFGVSA-----AEFHHAMATR 555 (889)
T ss_pred --CCCchhhHHHHHHHHHHHHh---ccHHHhhhhhhhhhhHHhhhhhHhhccCCch---hcCCCH-----HHHHHHHHHH
Confidence 22223444443 5555554 555443 3333445555543 3333231 133333 248887765
Q ss_pred ---CchhhhhccCcccccCCCCCccCcChhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 008865 359 ---APNATNSLCGYKIVTGQPSDRLGEDFSDCYKDFTERLTTVEDLTRATMKKLTQ 411 (550)
Q Consensus 359 ---~p~~l~~~cg~k~~Tgqpsd~lgeD~~~~~kdFr~RLqyl~~~~q~yikkl~~ 411 (550)
-|..|+.. -|. | .++=+|-|+||..|.+.=+.+-..+..
T Consensus 556 a~~wP~am~at-----sTH--------D-TKRGED~RARl~vLSEiP~~W~e~v~~ 597 (889)
T COG3280 556 ARLWPHAMLAT-----STH--------D-TKRGEDVRARLNVLSEIPQEWAEFVNR 597 (889)
T ss_pred HhcCchhhhcc-----ccc--------c-cccchhHHHHHHHhhcChHHHHHHHHH
Confidence 48887652 121 4 477789999999999998887766653
No 184
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=25.12 E-value=46 Score=37.96 Aligned_cols=17 Identities=18% Similarity=0.534 Sum_probs=9.7
Q ss_pred CCCChhhhhhHHHHHHH
Q 008865 289 DKLPEERKLDLLKALAE 305 (550)
Q Consensus 289 ~~L~~~~kl~lLK~lAE 305 (550)
.+++...+.+++..|..
T Consensus 289 g~l~~~eR~~il~~Fr~ 305 (572)
T PRK04537 289 GDVPQKKRESLLNRFQK 305 (572)
T ss_pred CCCCHHHHHHHHHHHHc
Confidence 34455566666666654
No 185
>smart00755 Grip golgin-97, RanBP2alpha,Imh1p and p230/golgin-245.
Probab=24.53 E-value=1e+02 Score=23.81 Aligned_cols=31 Identities=23% Similarity=0.423 Sum_probs=24.9
Q ss_pred HHHHHHHhhchhHHHHHHHHHHHHHHhhchHH
Q 008865 108 DILVQLLAAEEIVERDAVHKALMSLLRQDVKA 139 (550)
Q Consensus 108 DVL~QLLqsdd~~E~~~v~~aL~sllk~D~k~ 139 (550)
-||.|.|.+.|.. +...-.++.++|+.+|..
T Consensus 9 NVll~fl~~~e~~-r~~ll~vi~tlL~fs~~e 39 (46)
T smart00755 9 NVLLQFLTLRESE-RETLLKVISTVLQLSPEE 39 (46)
T ss_pred HHHHHHhccCcch-HHHHHHHHHHHhCCCHHH
Confidence 3789999998865 777778888998888764
No 186
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=24.40 E-value=9.4e+02 Score=26.14 Aligned_cols=83 Identities=19% Similarity=0.275 Sum_probs=59.4
Q ss_pred hhHHHHHHhhhcccCCCCChhhhhhHHHHHHHhCCCCCchhhhhhhHHHHHHHHhhCCCCCCCCCccchHHHHHHHHHHH
Q 008865 274 SKFLNYLNKHIIPVFDKLPEERKLDLLKALAEISPYTTPQDSRQILPSVAVLLKKYMPLRKTGGEEMNFTYVECLLYTFH 353 (550)
Q Consensus 274 t~f~~y~~~~IlP~l~~L~~~~kl~lLK~lAE~s~~~~~~~a~~~l~~i~~~L~~~mP~~~~~~~~l~fS~vEcLL~afh 353 (550)
.+||+++.-+++-.+..-+.+.|...|..|+-+..++....-..-++.|..+|+.-+..+. +++..+.+++|.-.
T Consensus 318 QR~F~~~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~---~~v~~s~L~tL~~~-- 392 (415)
T PF12460_consen 318 QRFFTQVLPKLLEGFKEADDEIKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPD---ADVLLSSLETLKMI-- 392 (415)
T ss_pred HHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHH--
Confidence 5777777777777777766668999999999999988877766677777777777775544 34666666665544
Q ss_pred HhhhcCchhh
Q 008865 354 HLAHKAPNAT 363 (550)
Q Consensus 354 ~L~~k~p~~l 363 (550)
....|+.+
T Consensus 393 --l~~~~~~i 400 (415)
T PF12460_consen 393 --LEEAPELI 400 (415)
T ss_pred --HHcCHHHH
Confidence 34456654
No 187
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=24.25 E-value=4.7e+02 Score=30.80 Aligned_cols=41 Identities=20% Similarity=0.341 Sum_probs=29.0
Q ss_pred HHHHHHHHHhhchhHHHHHHHHHHHHHHhhchH-HHHHHHHHh
Q 008865 106 IVDILVQLLAAEEIVERDAVHKALMSLLRQDVK-ASLTALFKH 147 (550)
Q Consensus 106 iaDVL~QLLqsdd~~E~~~v~~aL~sllk~D~k-~tLt~lf~q 147 (550)
|+|+ .++|.|-|..+++.|+..+..++..+-. --+.+|++-
T Consensus 6 ~~~l-~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~y 47 (668)
T PF04388_consen 6 ITEL-LSLLESNDLSVLEEIKALLQELLNSDREPWLVNGLVDY 47 (668)
T ss_pred HHHH-HHHhcCCchhhHHHHHHHHHHHhhccchHHHHHHHHHH
Confidence 4554 4588888888999999988888888633 234555554
No 188
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.82 E-value=1.1e+03 Score=28.94 Aligned_cols=70 Identities=19% Similarity=0.245 Sum_probs=45.0
Q ss_pred hhcccchhHHHHHhhccccccccCcchhhhHHHHHHHHHhhchhHHHHHHHHHHHHHHhhchHHHHHHHH
Q 008865 76 LIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQLLAAEEIVERDAVHKALMSLLRQDVKASLTALF 145 (550)
Q Consensus 76 LcEDed~~IR~qaik~Lp~lck~~~e~~~riaDVL~QLLqsdd~~E~~~v~~aL~sllk~D~k~tLt~lf 145 (550)
.+.+.|-.+=..||++|-...+....+.+-.-+-|+|||.+.|...+...=.++..|++.||+--+.-|+
T Consensus 400 YI~s~d~~faa~aV~AiGrCA~~~~sv~~tCL~gLv~Llsshde~Vv~eaV~vIk~Llq~~p~~h~~ii~ 469 (968)
T KOG1060|consen 400 YIKSSDRSFAAAAVKAIGRCASRIGSVTDTCLNGLVQLLSSHDELVVAEAVVVIKRLLQKDPAEHLEILF 469 (968)
T ss_pred HHhcCchhHHHHHHHHHHHHHHhhCchhhHHHHHHHHHHhcccchhHHHHHHHHHHHHhhChHHHHHHHH
Confidence 3444444455666666666666666666666677777777776666666666777777777776644433
No 189
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=23.80 E-value=9.7e+02 Score=26.09 Aligned_cols=103 Identities=19% Similarity=0.250 Sum_probs=75.5
Q ss_pred hHHHHHHHhc--CCHHHHHHHhhhhhHHhcc--CC-CcchHHHHHhhhhhcccchhHHHHHhhccccccccCcchhhh--
Q 008865 33 DYEGIIEAAK--TSLKAKQLAAQLIPRFFKF--FP-DLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSK-- 105 (550)
Q Consensus 33 ~y~~Il~~~K--gs~k~K~LAaQfI~kffk~--FP-~L~e~Ai~a~lDLcEDed~~IR~qaik~Lp~lck~~~e~~~r-- 105 (550)
+|-.++...+ ...-|+.=|=.||.+|-.. .| ++..--+.|+..+.|++|-..|..++.-|-++|--+|+.+.+
T Consensus 68 d~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~~~~~~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P~lv~~~g 147 (371)
T PF14664_consen 68 DIFIIRSLDRDNKNDVEREQALKLIRAFLEIKKGPKEIPRGVVRALVAIAEHEDDRLRRICLETLCELALLNPELVAECG 147 (371)
T ss_pred chhhHhhhcccCCChHHHHHHHHHHHHHHHhcCCcccCCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCHHHHHHcC
Confidence 4555555666 4456777777888887766 55 456677889999999999999999999999999999998766
Q ss_pred HHHHHHHHHhhchhHHHHHHHHHHHHHHhh
Q 008865 106 IVDILVQLLAAEEIVERDAVHKALMSLLRQ 135 (550)
Q Consensus 106 iaDVL~QLLqsdd~~E~~~v~~aL~sllk~ 135 (550)
..-+|.+.+...-....+.+-.++..++..
T Consensus 148 G~~~L~~~l~d~~~~~~~~l~~~lL~lLd~ 177 (371)
T PF14664_consen 148 GIRVLLRALIDGSFSISESLLDTLLYLLDS 177 (371)
T ss_pred CHHHHHHHHHhccHhHHHHHHHHHHHHhCC
Confidence 778888888873334444455555555544
No 190
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=23.72 E-value=3.5e+02 Score=24.73 Aligned_cols=69 Identities=16% Similarity=0.037 Sum_probs=42.4
Q ss_pred HHHHHhhhhhccCCCchhHHHHHHhhhcccCCCCChhhhhhHHHHHHHhCC-CCCchhhhhhhHHHHHHHH
Q 008865 258 SCLYMALPFFLRGASGSKFLNYLNKHIIPVFDKLPEERKLDLLKALAEISP-YTTPQDSRQILPSVAVLLK 327 (550)
Q Consensus 258 ~cl~~Alp~fs~~v~st~f~~y~~~~IlP~l~~L~~~~kl~lLK~lAE~s~-~~~~~~a~~~l~~i~~~L~ 327 (550)
.|++..-+-|...+.+.+|++-+.+-+.+. ...+...|-.+|.++...+. |.+....-..+..+|+.|+
T Consensus 63 ~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~-~~~~~~Vk~kil~ll~~W~~~f~~~~~~~~~~~~~y~~lk 132 (133)
T cd03561 63 LLVKNCGKPFHLQVADKEFLLELVKIAKNS-PKYDPKVREKALELILAWSESFGGHSEDLPGIEDAYKLLK 132 (133)
T ss_pred HHHHhCChHHHHHHhhHHHHHHHHHHhCCC-CCCCHHHHHHHHHHHHHHHHHhcCCCccchHHHHHHHHHh
Confidence 466666666666777778888866655554 34455666666666666644 3333233445677777765
No 191
>cd00864 PI3Ka Phosphoinositide 3-kinase family, accessory domain (PIK domain); PIK domain is conserved in PI3 and PI4-kinases. Its role is unclear, but it has been suggested to be involved in substrate presentation. Phosphoinositide 3-kinases play an important role in a variety of fundamental cellular processes and can be divided into three main classes, defined by their substrate specificity and domain architecture.
Probab=23.52 E-value=1.8e+02 Score=27.62 Aligned_cols=73 Identities=21% Similarity=0.186 Sum_probs=39.7
Q ss_pred hhHHHHHHHhc-CCHHHHHHHhhhhhHHhccCCCc-chHHHHHhhhhhcccchhHHHHHhhccccccccCcchhhhHHHH
Q 008865 32 KDYEGIIEAAK-TSLKAKQLAAQLIPRFFKFFPDL-SSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDI 109 (550)
Q Consensus 32 ~~y~~Il~~~K-gs~k~K~LAaQfI~kffk~FP~L-~e~Ai~a~lDLcEDed~~IR~qaik~Lp~lck~~~e~~~riaDV 109 (550)
...-.+|..+. .++.+..-+-+++... |.+ -.+|+.=+-.-+ .|+.||.-|++-|-.+..+ .+...
T Consensus 39 ~~lp~~L~sv~w~~~~~~~e~~~lL~~W----~~~~~~~aL~LL~~~~--~~~~vr~yAv~~L~~~~~~------~l~~y 106 (152)
T cd00864 39 KALPKLLKSVNWNDDEEVSELYQLLKWW----APLSPEDALELLSPKY--PDPVVRQYAVRVLESASDD------ELLLY 106 (152)
T ss_pred HHHHHHHHHccCCCHHHHHHHHHHHhcC----CCCCHHHHHHHcCCcC--CCHHHHHHHHHHHHhCCHH------HHHHH
Confidence 44445555555 4444444444444443 222 223333332223 3488999999988775442 57777
Q ss_pred HHHHHhh
Q 008865 110 LVQLLAA 116 (550)
Q Consensus 110 L~QLLqs 116 (550)
|-||.|+
T Consensus 107 lpQLVQa 113 (152)
T cd00864 107 LPQLVQA 113 (152)
T ss_pred HHHHHHH
Confidence 7777665
No 192
>smart00549 TAFH TAF homology. Domain in Drosophila nervy, CBFA2T1, human TAF105, human TAF130, and Drosophila TAF110. Also known as nervy homology region 1 (NHR1).
Probab=23.46 E-value=1.5e+02 Score=26.49 Aligned_cols=50 Identities=18% Similarity=0.375 Sum_probs=32.4
Q ss_pred HHHHHHHhhhcccchhhhcCChHHHHHHHHHHHHhhhc-ccchHHHH-HHHHHHh
Q 008865 162 EKVLSFIRDKVFPLKAELLKPQEEMERHITDLIKKSLE-DVTGAEFR-MFMDFLK 214 (550)
Q Consensus 162 Er~lkFl~~kl~~l~~e~l~~~eE~Ee~i~~~ikKvL~-dVt~~EF~-l~m~lL~ 214 (550)
.||-+|+.. |..+..+.-+ .|+.+.|-++|...+. .++.|||. .+-+.++
T Consensus 3 ~K~k~FL~t-Li~ls~~~~q--pe~~~~Vr~LV~~L~~~~i~~EeF~~~Lq~~ln 54 (92)
T smart00549 3 SKCKRFLTT-LIQLSNDISQ--PEVAERVRTLVLGLVNGTITAEEFTSRLQEALN 54 (92)
T ss_pred HHHHHHHHH-HHHHhcCCCc--chHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHc
Confidence 456667664 2233444432 5899999999988774 89999995 3444443
No 193
>smart00567 EZ_HEAT E-Z type HEAT repeats. Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.
Probab=23.06 E-value=72 Score=21.42 Aligned_cols=28 Identities=25% Similarity=0.207 Sum_probs=21.9
Q ss_pred hHHHHHhhccccccccCcchhhhHHHHHHHHHhh
Q 008865 83 GVRVQAIRGLPLFCKDTPEYLSKIVDILVQLLAA 116 (550)
Q Consensus 83 ~IR~qaik~Lp~lck~~~e~~~riaDVL~QLLqs 116 (550)
.||..|+..|-.+.- ++..+.|.++|++
T Consensus 2 ~vR~~aa~aLg~~~~------~~a~~~L~~~l~d 29 (30)
T smart00567 2 LVRHEAAFALGQLGD------EEAVPALIKALED 29 (30)
T ss_pred HHHHHHHHHHHHcCC------HhHHHHHHHHhcC
Confidence 589999999998843 4677888888865
No 194
>PF04380 BMFP: Membrane fusogenic activity; InterPro: IPR007475 BMFP consists of two structural domains, a coiled-coil C-terminal domain via which the protein self-associates as a trimer, and an N-terminal domain disordered at neutral pH but adopting an amphipathic alpha-helical structure in the presence of phospholipid vesicles, high ionic strength, acidic pH or SDS. BMFP interacts with phospholipid vesicles though the predicted amphipathic alpha-helix induced in the N-terminal half of the protein and promotes aggregation and fusion of vesicles in vitro.
Probab=22.76 E-value=1.7e+02 Score=24.94 Aligned_cols=35 Identities=31% Similarity=0.436 Sum_probs=27.5
Q ss_pred ChHHHHHHHHHHHHhhhc---ccchHHHHHHHHHHhhc
Q 008865 182 PQEEMERHITDLIKKSLE---DVTGAEFRMFMDFLKSL 216 (550)
Q Consensus 182 ~~eE~Ee~i~~~ikKvL~---dVt~~EF~l~m~lL~sL 216 (550)
+.+|++..|-..+.+.|. =||.+||+....+|..+
T Consensus 25 ~~~e~e~~~r~~l~~~l~kldlVtREEFd~q~~~L~~~ 62 (79)
T PF04380_consen 25 PREEIEKNIRARLQSALSKLDLVTREEFDAQKAVLART 62 (79)
T ss_pred hHHHHHHHHHHHHHHHHHHCCCCcHHHHHHHHHHHHHH
Confidence 467888887777777664 69999999998888754
No 195
>PF08678 Rsbr_N: Rsbr N terminal; InterPro: IPR014792 Rsbr is a regulator of the RNA polymerase sigma factor subunit sigma(B). The structure of the N-terminal domain belongs to the globin fold superfamily []. ; PDB: 2BNL_A.
Probab=22.67 E-value=2e+02 Score=27.05 Aligned_cols=34 Identities=21% Similarity=0.357 Sum_probs=30.1
Q ss_pred cChhhhHHHHHHH-------HHHHHHHHHHHHHHHHHHHhh
Q 008865 382 EDFSDCYKDFTER-------LTTVEDLTRATMKKLTQGLAD 415 (550)
Q Consensus 382 eD~~~~~kdFr~R-------Lqyl~~~~q~yikkl~~~l~~ 415 (550)
+.+.+++.||..| |.||.+|.|.+=+-+-+.|.+
T Consensus 54 ~~~~e~L~eFaer~VqlGwpL~flT~GL~~F~kvvy~~m~~ 94 (129)
T PF08678_consen 54 EEFEERLDEFAERVVQLGWPLKFLTKGLQEFRKVVYETMNE 94 (129)
T ss_dssp STTHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHh
Confidence 3568999999999 789999999999888888876
No 196
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=22.60 E-value=78 Score=37.69 Aligned_cols=12 Identities=25% Similarity=0.276 Sum_probs=6.7
Q ss_pred HHHHHHhhcccc
Q 008865 208 MFMDFLKSLSLF 219 (550)
Q Consensus 208 l~m~lL~sL~~~ 219 (550)
.||.+..+++.+
T Consensus 277 ~~~n~~qs~p~~ 288 (894)
T KOG0132|consen 277 QFMNVPQSIPSG 288 (894)
T ss_pred ccccccccCCCC
Confidence 356655555554
No 197
>PF12335 SBF2: Myotubularin protein ; InterPro: IPR022096 This domain family is found in eukaryotes, and is approximately 220 amino acids in length. The family is found in association with PF02141 from PFAM, PF03456 from PFAM, PF03455 from PFAM. This family is the middle region of SBF2, a member of the myotubularin family. Myotubularin-related proteins have been suggested to work in phosphoinositide-mediated signalling events that may also convey control of myelination. Mutations of SBF2 are implicated in Charcot-Marie-Tooth disease.
Probab=22.56 E-value=4.2e+02 Score=27.08 Aligned_cols=87 Identities=15% Similarity=0.264 Sum_probs=63.5
Q ss_pred hhHHHHHHHHHHHHHHhh---chHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhhhcccchhhhcCChHHHHHHHHHHH
Q 008865 118 EIVERDAVHKALMSLLRQ---DVKASLTALFKHIGSVDEPSTDEFIREKVLSFIRDKVFPLKAELLKPQEEMERHITDLI 194 (550)
Q Consensus 118 d~~E~~~v~~aL~sllk~---D~k~tLt~lf~qI~~~~e~~~eE~vREr~lkFl~~kl~~l~~e~l~~~eE~Ee~i~~~i 194 (550)
...=++++++.+.-||.. +.+.++.++..-+. .+..|..+..+|...+..-+. ++ +.+.=++|+..|
T Consensus 20 s~rrlevlr~ci~~if~~k~~e~~k~~~av~~~lk-------~~~aR~~~~~~L~~~~~~~k~-~L--~~~qF~~lv~li 89 (225)
T PF12335_consen 20 SARRLEVLRNCISFIFDNKILEARKSLPAVLRALK-------SRSARQAFCRELSKHVKSNKA-VL--DDQQFDYLVRLI 89 (225)
T ss_pred HHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHc-------cchHHHHHHHHHHHHHhcCCc-cC--CHHHHHHHHHHH
Confidence 345578899999999987 66667777777776 256788888888888776433 66 567778999999
Q ss_pred HhhhcccchH-HHHHHHHHHh
Q 008865 195 KKSLEDVTGA-EFRMFMDFLK 214 (550)
Q Consensus 195 kKvL~dVt~~-EF~l~m~lL~ 214 (550)
..+|+|.+.. |+-.-..||.
T Consensus 90 n~aLq~~s~~dd~~~Aa~LL~ 110 (225)
T PF12335_consen 90 NCALQDCSESDDYGIAAALLP 110 (225)
T ss_pred HHHHHHHHhccchHHHHHHHH
Confidence 9999876654 6754444443
No 198
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.55 E-value=1.5e+03 Score=27.74 Aligned_cols=109 Identities=26% Similarity=0.345 Sum_probs=79.6
Q ss_pred CCHHHHHHHhhhhhHHhccCCCcchHHHHHhhhhhcccchhHHHHHhhccccccccCcchh-------hhHHHHHHHHHh
Q 008865 43 TSLKAKQLAAQLIPRFFKFFPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYL-------SKIVDILVQLLA 115 (550)
Q Consensus 43 gs~k~K~LAaQfI~kffk~FP~L~e~Ai~a~lDLcEDed~~IR~qaik~Lp~lck~~~e~~-------~riaDVL~QLLq 115 (550)
.++-..+=|+.--.||...=|+|.+-=+.+--.|.-|-+.+|=..+++=+-.+|+.+|+.+ +..+-||-|+-.
T Consensus 154 ~~~~irKKA~Lca~r~irK~P~l~e~f~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~l~~~lV~iLk~l~~ 233 (866)
T KOG1062|consen 154 RDPYIRKKAALCAVRFIRKVPDLVEHFVIAFRKLLCEKHHGVLIAGLHLITELCKISPDALSYFRDLVPSLVKILKQLTN 233 (866)
T ss_pred CCHHHHHHHHHHHHHHHHcCchHHHHhhHHHHHHHhhcCCceeeeHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4455666688888899999999999999888888888889999999999999999987764 345556777777
Q ss_pred hchhHHHHHH-------HHHHHHHHhh------chHHHHHHHHHhhccC
Q 008865 116 AEEIVERDAV-------HKALMSLLRQ------DVKASLTALFKHIGSV 151 (550)
Q Consensus 116 sdd~~E~~~v-------~~aL~sllk~------D~k~tLt~lf~qI~~~ 151 (550)
+--+.|.++- +-=+..+|++ |.....+-++.|+.+.
T Consensus 234 ~~yspeydv~gi~dPFLQi~iLrlLriLGq~d~daSd~M~DiLaqvatn 282 (866)
T KOG1062|consen 234 SGYSPEYDVHGISDPFLQIRILRLLRILGQNDADASDLMNDILAQVATN 282 (866)
T ss_pred CCCCCccCccCCCchHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhc
Confidence 7777666542 1122233332 5666677777777764
No 199
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=22.47 E-value=2.7e+02 Score=26.98 Aligned_cols=68 Identities=19% Similarity=0.167 Sum_probs=54.1
Q ss_pred HHhhhhhcccchhHHHHHhhccccccccCcchhhhHHHHHHHHHhhchhHHHHHHHHHHHHHHhhchH
Q 008865 71 DAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQLLAAEEIVERDAVHKALMSLLRQDVK 138 (550)
Q Consensus 71 ~a~lDLcEDed~~IR~qaik~Lp~lck~~~e~~~riaDVL~QLLqsdd~~E~~~v~~aL~sllk~D~k 138 (550)
+.++++|-+.+..||..|++=|-.+-+-+=-|=...+-.|.-|..+.++.-+..+...|..+..-.+-
T Consensus 11 ~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s 78 (187)
T PF12830_consen 11 KNILELCLSSDDSVRLAALQVLELILRQGLVNPKQCVPTLIALETSPNPSIRSRAYQLLKELHEKHES 78 (187)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCChHHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHH
Confidence 46899999999999999999888887765444456788888887777888888888877777776654
No 200
>smart00324 RhoGAP GTPase-activator protein for Rho-like GTPases. GTPase activator proteins towards Rho/Rac/Cdc42-like small GTPases. etter domain limits and outliers.
Probab=22.33 E-value=1.2e+02 Score=28.37 Aligned_cols=44 Identities=20% Similarity=0.345 Sum_probs=35.0
Q ss_pred HHhhhhhHHhccCCC--cchHHHHHhhhhhcccchhHHHHHhhccc
Q 008865 50 LAAQLIPRFFKFFPD--LSSRAVDAHLDLIEEEELGVRVQAIRGLP 93 (550)
Q Consensus 50 LAaQfI~kffk~FP~--L~e~Ai~a~lDLcEDed~~IR~qaik~Lp 93 (550)
.+|..+-+||+..|+ +-.+.++.++++|...+..-|+.+++.+.
T Consensus 58 ~va~~lK~~Lr~Lp~pli~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (174)
T smart00324 58 DVAGLLKLFLRELPEPLIPYELYEEFIEAAKVEDETERLRALRELI 103 (174)
T ss_pred HHHHHHHHHHHhCCCccCCHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 578889999999998 56778999999998777777766666543
No 201
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=22.21 E-value=1.6e+03 Score=28.15 Aligned_cols=252 Identities=18% Similarity=0.147 Sum_probs=137.6
Q ss_pred CCCcchHHHHHhhhhhcccchhHHHHHhhccccccccCcch-hhhHHHHHHHHHhhchhHHHHHHHHHHHHHHhhch---
Q 008865 62 FPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEY-LSKIVDILVQLLAAEEIVERDAVHKALMSLLRQDV--- 137 (550)
Q Consensus 62 FP~L~e~Ai~a~lDLcEDed~~IR~qaik~Lp~lck~~~e~-~~riaDVL~QLLqsdd~~E~~~v~~aL~sllk~D~--- 137 (550)
=-|..-+.+..++.|-||-...|.--|+|=|-.+...-|++ +.-++|-|+-=+.+...+=++.-.-+|......=|
T Consensus 41 d~dSe~kvv~~lLklL~D~ngEVQnlAVKClg~lvsKvke~~le~~ve~L~~~~~s~keq~rdissi~Lktvi~nl~P~~ 120 (1233)
T KOG1824|consen 41 DDDSERKVVKMLLKLLEDKNGEVQNLAVKCLGPLVSKVKEDQLETIVENLCSNMLSGKEQLRDISSIGLKTVIANLPPSS 120 (1233)
T ss_pred cccchhHHHHHHHHHHhccCcHHHHHHHHHHHHHHhhchHHHHHHHHHHHhhhhccchhhhccHHHHHHHHHHhcCCCcc
Confidence 34556677888999999999999999999888777766666 55588888777777666666666666665544422
Q ss_pred --------HHHHHHHHHhhccCCCCCChH-HHHHHHHHHHhhhcccchhhhcCChHHHHHHHHHHHHhhhcccchHHH--
Q 008865 138 --------KASLTALFKHIGSVDEPSTDE-FIREKVLSFIRDKVFPLKAELLKPQEEMERHITDLIKKSLEDVTGAEF-- 206 (550)
Q Consensus 138 --------k~tLt~lf~qI~~~~e~~~eE-~vREr~lkFl~~kl~~l~~e~l~~~eE~Ee~i~~~ikKvL~dVt~~EF-- 206 (550)
-.++++.|.+-.. .+++. .++=.++.-+.+-+-..+.-+- +.+.-|+...+--|+. ..+.
T Consensus 121 ~~~la~tV~~~~t~~l~~~i~---~qe~~sai~~e~lDil~d~lsr~g~ll~----~fh~~il~~l~~ql~s--~R~aVr 191 (1233)
T KOG1824|consen 121 SSFLAATVCKRITPKLKQAIS---KQEDVSAIKCEVLDILADVLSRFGTLLP----NFHLSILKCLLPQLQS--PRLAVR 191 (1233)
T ss_pred ccccccHHHHHHHHHHHHHhh---hcccchhhHHHHHHHHHHHHHhhcccCc----chHHHHHHHHhhcccC--hHHHHH
Confidence 2234444444431 12222 3565555555553322221111 1222222222111111 1111
Q ss_pred HHHHHHHhhccccCCCCchhHHHHHHHHHHHhhcccccCCCCChhhHHHHHHHHHHhh----hhh-ccCCCchhHHHHHH
Q 008865 207 RMFMDFLKSLSLFGEKAPTERMKELIGIIEGQADLDAQFNVSDADHIDRLISCLYMAL----PFF-LRGASGSKFLNYLN 281 (550)
Q Consensus 207 ~l~m~lL~sL~~~~~~~~~gr~qeLv~~i~eqa~Ld~~f~~sD~d~idRli~cl~~Al----p~f-s~~v~st~f~~y~~ 281 (550)
..-...|+.|-++. +. .-.++++..- |+..-++..+..+.-.|+|+-... .=| ++.....+++.=||
T Consensus 192 Kkai~~l~~la~~~---~~---~ly~~li~~L--l~~L~~~~q~~~~rt~Iq~l~~i~r~ag~r~~~h~~~ivp~v~~y~ 263 (1233)
T KOG1824|consen 192 KKAITALGHLASSC---NR---DLYVELIEHL--LKGLSNRTQMSATRTYIQCLAAICRQAGHRFGSHLDKIVPLVADYC 263 (1233)
T ss_pred HHHHHHHHHHHHhc---CH---HHHHHHHHHH--HhccCCCCchHHHHHHHHHHHHHHHHhcchhhcccchhhHHHHHHh
Confidence 11122344443432 11 2233333322 122223456677888888875432 222 33333577777788
Q ss_pred hhhcccCCCCChhhhhhHHHHHHHhCCCCCchhhhhhhHHHHHHHHhhCCCCCC
Q 008865 282 KHIIPVFDKLPEERKLDLLKALAEISPYTTPQDSRQILPSVAVLLKKYMPLRKT 335 (550)
Q Consensus 282 ~~IlP~l~~L~~~~kl~lLK~lAE~s~~~~~~~a~~~l~~i~~~L~~~mP~~~~ 335 (550)
+++ +.-|++.+--.|.+|--+-.+|. .+.-.+.|.|.+++.+|+--.|.
T Consensus 264 ~~~----e~~dDELrE~~lQale~fl~rcp-~ei~p~~pei~~l~l~yisYDPN 312 (1233)
T KOG1824|consen 264 NKI----EEDDDELREYCLQALESFLRRCP-KEILPHVPEIINLCLSYISYDPN 312 (1233)
T ss_pred ccc----ccCcHHHHHHHHHHHHHHHHhCh-hhhcccchHHHHHHHHHhccCCC
Confidence 777 44455555555666655555554 34445789999999999977664
No 202
>PF11935 DUF3453: Domain of unknown function (DUF3453); InterPro: IPR021850 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 239 to 261 amino acids in length. ; PDB: 3ODS_A 3ODR_A 3O2Q_A 3O2T_A 3O2S_A 3GS3_A.
Probab=22.20 E-value=1.3e+02 Score=30.38 Aligned_cols=42 Identities=19% Similarity=0.206 Sum_probs=27.0
Q ss_pred hhhHHHHHHHHhhCCCC----CCCCCccchHHHH-HHHHHHHHhhhc
Q 008865 317 QILPSVAVLLKKYMPLR----KTGGEEMNFTYVE-CLLYTFHHLAHK 358 (550)
Q Consensus 317 ~~l~~i~~~L~~~mP~~----~~~~~~l~fS~vE-cLL~afh~L~~k 358 (550)
++.+.|...|..+=|.. |.....++-..|| +|=..|-++-+.
T Consensus 149 ~~~~~Il~~ll~~~~~~~~~~~~~~~~~~v~sv~k~lk~~l~~llk~ 195 (239)
T PF11935_consen 149 QFMSRILPALLSFNPNLSPMQPPTLSKLQVKSVEKTLKIFLLHLLKH 195 (239)
T ss_dssp GGHHHHHHHHHHHHHS------TTCSHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHhcCccccccCCccchHHHHHHHHHHHHHHHHHHHCC
Confidence 45666777777777755 4445678888888 666666665553
No 203
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=22.07 E-value=57 Score=37.67 Aligned_cols=8 Identities=0% Similarity=0.198 Sum_probs=3.1
Q ss_pred hhhHHHHH
Q 008865 250 ADHIDRLI 257 (550)
Q Consensus 250 ~d~idRli 257 (550)
.+..++.|
T Consensus 109 ~e~A~~Ai 116 (578)
T TIGR01648 109 KEEAKEAV 116 (578)
T ss_pred HHHHHHHH
Confidence 33334333
No 204
>PRK12678 transcription termination factor Rho; Provisional
Probab=21.95 E-value=69 Score=37.36 Aligned_cols=11 Identities=64% Similarity=0.912 Sum_probs=5.3
Q ss_pred CCCCCCCCccc
Q 008865 528 GGRGGIRGRGR 538 (550)
Q Consensus 528 ~~~~g~rgrgr 538 (550)
+||+|+|+|.|
T Consensus 259 ~~~~~~~~~~~ 269 (672)
T PRK12678 259 GGRRGRRFRDR 269 (672)
T ss_pred cccccccchhh
Confidence 44555554444
No 205
>PF06757 Ins_allergen_rp: Insect allergen related repeat, nitrile-specifier detoxification; InterPro: IPR010629 This entry represents several insect specific allergen repeats. These repeats are commonly found in various proteins from cockroaches, fruit flies and mosquitos. It has been suggested that the repeat sequences have evolved by duplication of an ancestral amino acid domain, which may have arisen from the mitochondrial energy transfer proteins []. This family exemplifies a case of novel gene evolution. The case in point is the arms-race between plants and their infective insective herbivores in the area of the glucosinolate-myrosinase system. Brassicas have developed the glucosinolate-myrosinase system as chemical defence mechanism against the insects, and consequently the insects have adapted to produce a detoxifying molecule, nitrile-specifier protein (NSP). NSP is present in the Pieris rapae (Cabbage white butterfly). NSP is structurally different from and has no amino acid homology to any known detoxifying enzymes, and it appears to have arisen by a process of domain and gene duplication of a sequence of unknown function that is widespread in insect species and referred to as insect-allergen-repeat protein. Thus this family is found either as a single domain or as a multiple repeat-domain [].
Probab=21.77 E-value=2.2e+02 Score=27.43 Aligned_cols=154 Identities=12% Similarity=0.219 Sum_probs=0.0
Q ss_pred hhHHHHHHHhcCCHHHHHHHhhhhhHHhccCCC-------cchHHHHHhhhhhcccchhHHHHHhhccccccccCcchhh
Q 008865 32 KDYEGIIEAAKTSLKAKQLAAQLIPRFFKFFPD-------LSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLS 104 (550)
Q Consensus 32 ~~y~~Il~~~Kgs~k~K~LAaQfI~kffk~FP~-------L~e~Ai~a~lDLcEDed~~IR~qaik~Lp~lck~~~e~~~ 104 (550)
++++.+++.+.-.. --+.+.+|+.++|+ +....+..++.-+++- -.++++-.+...+-=.+.
T Consensus 6 ~d~~dfl~lIp~~~-----i~~i~~~Y~~~D~efq~~~~yl~s~~f~~l~~~l~~~------pE~~~l~~yL~~~gldv~ 74 (179)
T PF06757_consen 6 EDFQDFLDLIPMEE-----IQDIVQRYYLEDAEFQAAVRYLNSSEFKQLWQQLEAL------PEVKALLDYLESAGLDVY 74 (179)
T ss_pred HHHHHHHHhcCHHH-----HHHHHHHHHHcCHHHHHHHHHHcChHHHHHHHHHHcC------HHHHHHHHHHHHCCCCHH
Q ss_pred hHHHHHHHHHhhchhHHHHHHHHHHHHHHhhchHHHHHHHHHhhccCCCCCChHHH-HHHHHHHHhhhcccchhhhcCCh
Q 008865 105 KIVDILVQLLAAEEIVERDAVHKALMSLLRQDVKASLTALFKHIGSVDEPSTDEFI-REKVLSFIRDKVFPLKAELLKPQ 183 (550)
Q Consensus 105 riaDVL~QLLqsdd~~E~~~v~~aL~sllk~D~k~tLt~lf~qI~~~~e~~~eE~v-REr~lkFl~~kl~~l~~e~l~~~ 183 (550)
...|.+..+|.-....-....+.+ ..+.++|+++.+. ..+ ++++.+...+|+.+-
T Consensus 75 ~~i~~i~~~l~~~~~~p~~~~~~~--------~~~g~~g~~~di~--------~~lP~~~l~aL~~~K~~~s-------- 130 (179)
T PF06757_consen 75 YYINQINDLLGLPPLNPTPSLSCS--------RGGGLNGFVDDIL--------ALLPRDKLRALYEEKLATS-------- 130 (179)
T ss_pred HHHHHHHHHHcCCcCCCCcccccc--------cCCCHHHHHHHHH--------HHCCHHHHHHHHHHHHHCC--------
Q ss_pred HHHHHHHHHHHHhhhcccchHHHHHHHHHHhhccccCCCCchhHHHHHHHHHHH
Q 008865 184 EEMERHITDLIKKSLEDVTGAEFRMFMDFLKSLSLFGEKAPTERMKELIGIIEG 237 (550)
Q Consensus 184 eE~Ee~i~~~ikKvL~dVt~~EF~l~m~lL~sL~~~~~~~~~gr~qeLv~~i~e 237 (550)
.+.+...+.+++.||..+++-+...+-+ +.++.-+.+
T Consensus 131 --------~~F~~f~~~l~S~ef~~~~~~~~~~~~~---------~~~~~~L~~ 167 (179)
T PF06757_consen 131 --------PEFAEFVEALRSPEFQQLYNALWASPEF---------QRLLNELRE 167 (179)
T ss_pred --------HHHHHHHHHHcCHHHHHHHHHHHcCHHH---------HHHHHHHHH
No 206
>PRK14511 maltooligosyl trehalose synthase; Provisional
Probab=21.73 E-value=1.6e+03 Score=27.74 Aligned_cols=167 Identities=16% Similarity=0.196 Sum_probs=91.6
Q ss_pred ccchHHH-HHHHHHHhhccccCCCCchhHHHHHHHHHHHhhcccccCCCCChhhHHHHHHHHHHhhhhhccCCCchhHHH
Q 008865 200 DVTGAEF-RMFMDFLKSLSLFGEKAPTERMKELIGIIEGQADLDAQFNVSDADHIDRLISCLYMALPFFLRGASGSKFLN 278 (550)
Q Consensus 200 dVt~~EF-~l~m~lL~sL~~~~~~~~~gr~qeLv~~i~eqa~Ld~~f~~sD~d~idRli~cl~~Alp~fs~~v~st~f~~ 278 (550)
|+|.... ..+.+++.++|.|.|..+. ......|...|+..+.-++...|- .....+.
T Consensus 421 D~t~~~l~~al~e~la~fpVYRtY~~~-----------------~~~~~~d~~~i~~a~~~ar~~~~~-----~~~~~~~ 478 (879)
T PRK14511 421 DFTLGALRRALVELIAAFPVYRTYLPA-----------------CGRSARDRQVIEQAAARARRRLPE-----ADWPVLD 478 (879)
T ss_pred cCCHHHHHHHHHHHHHcCCccCcCCCC-----------------CCCCHHHHHHHHHHHHHHHHhCCc-----cchHHHH
Confidence 5665555 4689999999999877631 122233344444444333322111 1235556
Q ss_pred HHHhhhcccC-CCCChhhhhhHHHHHHHhCCCCCchhhhhh---hHHHHHHHHh--hCCCCCCCCCccchHHHHHHHHHH
Q 008865 279 YLNKHIIPVF-DKLPEERKLDLLKALAEISPYTTPQDSRQI---LPSVAVLLKK--YMPLRKTGGEEMNFTYVECLLYTF 352 (550)
Q Consensus 279 y~~~~IlP~l-~~L~~~~kl~lLK~lAE~s~~~~~~~a~~~---l~~i~~~L~~--~mP~~~~~~~~l~fS~vEcLL~af 352 (550)
|+-.-++... ..++++.+-..+....-+-++|++..|+-. .=..|.-|+. -+...|. .+-.| + =+|
T Consensus 479 ~l~~~L~~~~~~~~~~~~~~~~~~f~~rfQQ~tgpvmAKgvEDTaFYry~rL~slNEVGg~P~---~f~~s-~----~~F 550 (879)
T PRK14511 479 FLEDVLLGRAARELPRGRRKLRLEFAVRFQQLTGPVMAKGVEDTAFYRYNRLLSLNEVGGDPE---RFSAS-V----EDF 550 (879)
T ss_pred HHHHHhcCCccccCchhhhHHHHHHHHHHHHHhHHHHHHHhhhhhhhhhhhhhhhccCCCCcc---ccCCC-H----HHH
Confidence 6665555433 224443333334444445566777665433 3345555553 3333231 01111 2 357
Q ss_pred HHhhh----cCchhhhhccCcccccCCCCCccCcChhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 008865 353 HHLAH----KAPNATNSLCGYKIVTGQPSDRLGEDFSDCYKDFTERLTTVEDLTRATMKKLT 410 (550)
Q Consensus 353 h~L~~----k~p~~l~~~cg~k~~Tgqpsd~lgeD~~~~~kdFr~RLqyl~~~~q~yikkl~ 410 (550)
|.... ..|..|+.. =|. | .+|-+|-|+||..|++.-...-..+.
T Consensus 551 H~~~~~R~~~~P~~m~at-----sTH--------D-TKRgEDvRARi~vLSE~p~~W~~~v~ 598 (879)
T PRK14511 551 HAANAERLRRFPHSMLTT-----STH--------D-TKRGEDVRARISVLSELPDEWAAAVE 598 (879)
T ss_pred HHHHHHHHHhCCccccch-----hhc--------c-ccccHHHHHHHHHHhcCHHHHHHHHH
Confidence 77654 468888652 132 5 68899999999999999888766655
No 207
>cd07920 Pumilio Pumilio-family RNA binding domain. Puf repeats (also labelled PUM-HD or Pumilio homology domain) mediate sequence specific RNA binding in fly Pumilio, worm FBF-1 and FBF-2, and many other proteins such as vertebrate Pumilio. These proteins function as translational repressors in early embryonic development by binding to sequences in the 3' UTR of target mRNAs, such as the nanos response element (NRE) in fly Hunchback mRNA, or the point mutation element (PME) in worm fem-3 mRNA. Other proteins that contain Puf domains are also plausible RNA binding proteins. Yeast PUF1 (JSN1), for instance, appears to contain a single RNA-recognition motif (RRM) domain. Puf repeat proteins have been observed to function asymmetrically and may be responsible for creating protein gradients involved in the specification of cell fate and differentiation. Puf domains usually occur as a tandem repeat of 8 domains. This model encompasses all 8 tandem repeats. Some proteins may have fewer (canon
Probab=21.27 E-value=8.8e+02 Score=24.70 Aligned_cols=19 Identities=5% Similarity=0.095 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHhhhcccch
Q 008865 158 EFIREKVLSFIRDKVFPLK 176 (550)
Q Consensus 158 E~vREr~lkFl~~kl~~l~ 176 (550)
+..|+.+++.+...+..+.
T Consensus 214 ~~~~~~i~~~l~~~~~~l~ 232 (322)
T cd07920 214 PDDTSRIIEKLLGNIVQLS 232 (322)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4556666666655554443
No 208
>COG4912 Predicted DNA alkylation repair enzyme [DNA replication, recombination, and repair]
Probab=21.17 E-value=6.8e+02 Score=25.73 Aligned_cols=102 Identities=23% Similarity=0.285 Sum_probs=75.4
Q ss_pred ChhhHHHHHHHhcCCHHHHHHHhhhhhHHhccCCCcchHHHHHhhhhhcccchhHHHHHhhccccccccCcchhhhHHHH
Q 008865 30 NVKDYEGIIEAAKTSLKAKQLAAQLIPRFFKFFPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDI 109 (550)
Q Consensus 30 ~~~~y~~Il~~~Kgs~k~K~LAaQfI~kffk~FP~L~e~Ai~a~lDLcEDed~~IR~qaik~Lp~lck~~~e~~~riaDV 109 (550)
..+.|...+.-+..=..+=-||..|+. ++++|+|-+. ..-.-+++..=+|..+|=-+-..|++++. .+-+.+|
T Consensus 86 ~~~~~~~~i~~~nnW~vvD~la~~~V~--~~~~~~li~~----~~a~~~~~~~w~rraaiv~~l~~~k~~~~-~~~if~i 158 (222)
T COG4912 86 TYEEYDQWINTVNNWAVVDTLANHFVG--IPLWPDLIEE----WAADAEEDNRWERRAAIVHQLVYKKKTLD-LLEIFEI 158 (222)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHhhc--cccCHHHHHH----HHhccccchHHHHHHHHHHHHHHhcCccc-hhHHHHH
Confidence 336666666655555667788888887 8888887543 33344444456789999999999999854 4478888
Q ss_pred HHHHHhhchhHHHHHHHHHHHHHHhhchH
Q 008865 110 LVQLLAAEEIVERDAVHKALMSLLRQDVK 138 (550)
Q Consensus 110 L~QLLqsdd~~E~~~v~~aL~sllk~D~k 138 (550)
-=++|.+.+.=..-++..+|.++-+..+.
T Consensus 159 ~E~~l~d~e~fV~KAigWaLrq~~k~~~e 187 (222)
T COG4912 159 IELLLGDKEFFVQKAIGWALRQIGKHSNE 187 (222)
T ss_pred HHHHccChHHHHHHHHHHHHHHHHhhchH
Confidence 88999998888888888888888884443
No 209
>PF08542 Rep_fac_C: Replication factor C C-terminal domain; InterPro: IPR013748 Replication factor C (RFC) is a multimeric AAA+ protein complex that loads the DNA polymerase processivity clamp PCNA (Proliferating Cell Nuclear Antigen) onto DNA using ATP to drive the reaction []. PCNA functions at multiple levels in directing DNA metabolic pathways []. When bound to DNA, PCNA organises various proteins involved in DNA replication, DNA repair, DNA modification, and chromatin modelling. Replication factor C consists of five subunits in a spiral arrangement: Rfc1, Rfc2, Rfc3, Rfc4, and Rfc5 subunits. Rfc1 and Rfc2 load the PCNA sliding clamp onto DNA, while Rfc3 binds ATP and also acts as a checkpoint sensor. The RFC complex contains four ATP sites (sites A, B, C, and D) located at subunit interfaces. In each ATP site, an arginine residue from one subunit is located near the gamma-phosphate of ATP bound in the adjacent subunit. These arginine residues act as "arginine fingers" that can potentially perform two functions: sensing that ATP is bound and catalyzing ATP hydrolysis []. This entry represents the core domain found in Rfc1-5.; GO: 0003689 DNA clamp loader activity, 0005524 ATP binding, 0006260 DNA replication, 0005663 DNA replication factor C complex; PDB: 1SXJ_B 2CHG_B 2CHV_F 2CHQ_C 1IQP_A.
Probab=21.06 E-value=3.8e+02 Score=22.21 Aligned_cols=37 Identities=35% Similarity=0.614 Sum_probs=29.4
Q ss_pred ccCCCchhHHHHHHhhhcccCCCCChhhhhhHHHHHHHh
Q 008865 268 LRGASGSKFLNYLNKHIIPVFDKLPEERKLDLLKALAEI 306 (550)
Q Consensus 268 s~~v~st~f~~y~~~~IlP~l~~L~~~~kl~lLK~lAE~ 306 (550)
..|.+...+++-+.+.++-. ++|+..|.++++.+|+.
T Consensus 32 ~~G~s~~~Il~~l~~~l~~~--~~~~~~k~~i~~~la~~ 68 (89)
T PF08542_consen 32 VEGYSASDILKQLHEVLVES--DIPDSQKAEILKILAEI 68 (89)
T ss_dssp HTT--HHHHHHHHHHHHHTS--TSSHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHHHHHHHh--hccHHHHHHHHHHHHHH
Confidence 35777888888888888776 78889999999999997
No 210
>KOG0412 consensus Golgi transport complex COD1 protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.82 E-value=4.3e+02 Score=31.51 Aligned_cols=26 Identities=46% Similarity=0.754 Sum_probs=18.4
Q ss_pred HHHHHHHhc-CCHHHHHHHhhhhhHHhccCCCcc
Q 008865 34 YEGIIEAAK-TSLKAKQLAAQLIPRFFKFFPDLS 66 (550)
Q Consensus 34 y~~Il~~~K-gs~k~K~LAaQfI~kffk~FP~L~ 66 (550)
-+.++.|++ ++-++ |.||||-||=+.
T Consensus 197 ~~~f~eA~r~~D~~e-------i~RffKmFPliG 223 (773)
T KOG0412|consen 197 KERFTEAVRKQDLKE-------ITRFFKMFPLIG 223 (773)
T ss_pred HHHHHHHHhcccHHH-------HHHHHHHccccC
Confidence 455667777 55544 789999999554
No 211
>PF10136 SpecificRecomb: Site-specific recombinase; InterPro: IPR011385 This group represents a site-specific recombinase Gcr. Please see the following relevant reference: [].
Probab=20.75 E-value=7.1e+02 Score=29.40 Aligned_cols=99 Identities=17% Similarity=0.243 Sum_probs=48.4
Q ss_pred HHHHHHHHHhhccccCCCC------chhHHHHHHHHHHHhhcccccCCCCChhhHHHHHHHHHHhhhhhccCCC-----c
Q 008865 205 EFRMFMDFLKSLSLFGEKA------PTERMKELIGIIEGQADLDAQFNVSDADHIDRLISCLYMALPFFLRGAS-----G 273 (550)
Q Consensus 205 EF~l~m~lL~sL~~~~~~~------~~gr~qeLv~~i~eqa~Ld~~f~~sD~d~idRli~cl~~Alp~fs~~v~-----s 273 (550)
.+..+.+++.++.--.... ...|++.|++.+....++-..| ...+-+++.-.++.--|...|.. -
T Consensus 6 ~~~~L~~Lv~wlR~~~~~~~~~~~~a~~rl~~Ll~~L~~~p~~~~~l----~~~l~~~l~~~~~~~L~~d~Gi~~~~gF~ 81 (643)
T PF10136_consen 6 RHDWLIDLVDWLRPADPDDDDSVAAAHARLRALLDVLERNPELRAAL----RRYLRRLLRERRQYPLLTDSGILSRSGFF 81 (643)
T ss_pred HHHHHHHHHHHhCccCCCCccccchHHHHHHHHHHHHHhCHHHHHHH----HHHHHHHHhcCCcchHHHhcCCCCCccHH
Confidence 3455666666666333221 3467777888887653333222 12333333322222222233333 3
Q ss_pred hhHHHHHHhhhcccCCCCChhhhhhHHHHHHHhCCCCCchh
Q 008865 274 SKFLNYLNKHIIPVFDKLPEERKLDLLKALAEISPYTTPQD 314 (550)
Q Consensus 274 t~f~~y~~~~IlP~l~~L~~~~kl~lLK~lAE~s~~~~~~~ 314 (550)
+++..=+-++++|..- +.-++--+|..+ |+.+.|
T Consensus 82 ~El~~Rl~~r~lP~~~-----d~~~l~~lf~~l--F~~~~D 115 (643)
T PF10136_consen 82 SELSRRLYERLLPAPP-----DPNDLSDLFNLL--FPRPSD 115 (643)
T ss_pred HHHHHHHHhhcCCCCC-----ChhHHHHHHHHH--CCCCCc
Confidence 4444455557777322 334555666666 556655
No 212
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=20.69 E-value=2.2e+02 Score=29.53 Aligned_cols=51 Identities=22% Similarity=0.408 Sum_probs=41.4
Q ss_pred chHHHHHhhhhhcccchh--HHHHHhhccccccccCcchhhhHHHHHHHHHhh
Q 008865 66 SSRAVDAHLDLIEEEELG--VRVQAIRGLPLFCKDTPEYLSKIVDILVQLLAA 116 (550)
Q Consensus 66 ~e~Ai~a~lDLcEDed~~--IR~qaik~Lp~lck~~~e~~~riaDVL~QLLqs 116 (550)
.+-.++.+.++++|.+.. ||..|+++|..+...+|..-..++..+.+++..
T Consensus 109 ~~G~~~~L~~li~~~~~~~yvR~aa~~aL~~l~~~~~~~Re~vi~~f~~ll~~ 161 (249)
T PF06685_consen 109 GDGDIEPLKELIEDPDADEYVRMAAISALAFLVHEGPISREEVIQYFRELLNY 161 (249)
T ss_pred hCCCHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 344566778889988876 799999999999999987666688888888865
No 213
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=20.41 E-value=1.9e+02 Score=33.66 Aligned_cols=79 Identities=29% Similarity=0.433 Sum_probs=0.0
Q ss_pred cCCCCccCCCcccccccccCCCCCCCCCCcCCCCCCC---CCCCCCCccccc----------------------CCCCCC
Q 008865 458 SKTPSFIGDKSVNLSWKEATKPSVPSTTTASGGKRPA---SINGSGNTASKK----------------------GRGSGG 512 (550)
Q Consensus 458 ~~pPsf~~~~~i~lSW~~~~k~~~~~~~~~~~~~r~~---~~~g~~~~~~~~----------------------gr~~~~ 512 (550)
|.-|++-+...----|--...-. .+.+-.|-+|. |-+|+.+ +| -||+||
T Consensus 796 hGGp~erHgrdsrdGwgGygsdK---r~seGrGlppppr~Rdwg~h~---rR~d~hs~r~wqgs~dgG~a~r~h~rWqGG 869 (940)
T KOG4661|consen 796 HGGPSERHGRDSRDGWGGYGSDK---RNSEGRGLPPPPRDRDWGSHY---RRDDSHSLRRWQGSSDGGGAYRSHSRWQGG 869 (940)
T ss_pred CCCchhhccCccCCCcccccccc---cccCCCCCCCCCccccccccc---cccchhhhhhhccCCCCcccccccccccCC
Q ss_pred cchhhhhhhhcCCCCCC----CCCCCCcccCCCCCCCCCCC
Q 008865 513 LQNQLVNRALEGISRGG----RGGIRGRGRGWGARGRGRGY 549 (550)
Q Consensus 513 ~~~~~~~~~~~g~~~~~----~~g~rgrgr~~g~~gr~~~~ 549 (550)
.+... |-++|| ++|..|||| +---|-.|||
T Consensus 870 ers~s------G~sGpGHm~nrgg~sgrg~-fapgg~srGh 903 (940)
T KOG4661|consen 870 ERSHS------GSSGPGHMTNRGGKSGRGR-FAPGGFSRGH 903 (940)
T ss_pred ccccc------CCCCCccccccccccCCcc-ccCCccccCC
No 214
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=20.22 E-value=1.5e+03 Score=27.47 Aligned_cols=116 Identities=20% Similarity=0.177 Sum_probs=69.8
Q ss_pred ChhhHHHHHHHhc-CCHHHHHHHhhhhhHHhccCCCcchHHHHH------hhhhhcccchhHHHHHhhcccccc------
Q 008865 30 NVKDYEGIIEAAK-TSLKAKQLAAQLIPRFFKFFPDLSSRAVDA------HLDLIEEEELGVRVQAIRGLPLFC------ 96 (550)
Q Consensus 30 ~~~~y~~Il~~~K-gs~k~K~LAaQfI~kffk~FP~L~e~Ai~a------~lDLcEDed~~IR~qaik~Lp~lc------ 96 (550)
-..+-..|+.+.. .+--+|.=+|+-+.|-+++-|+...-.... ++-=.-| .+-|=.++=.+++.|.
T Consensus 404 V~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~D-ePrva~N~CWAf~~Laea~~eA 482 (859)
T KOG1241|consen 404 VIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLND-EPRVASNVCWAFISLAEAAYEA 482 (859)
T ss_pred HhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhhh-CchHHHHHHHHHHHHHHHHHHh
Confidence 4455677777777 666788999999999999988443332221 1111122 2223222222222222
Q ss_pred -ccC---cchhhhHHHHHHHHHhh------chhHHHHHHHHHHHHHHhhchHHHHHHHHH
Q 008865 97 -KDT---PEYLSKIVDILVQLLAA------EEIVERDAVHKALMSLLRQDVKASLTALFK 146 (550)
Q Consensus 97 -k~~---~e~~~riaDVL~QLLqs------dd~~E~~~v~~aL~sllk~D~k~tLt~lf~ 146 (550)
..+ +.+.+--=+|+.+||.. .+..=|.++..||+++++.-|+.+...+..
T Consensus 483 ~~s~~qt~~~t~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~~vy~~v~~ 542 (859)
T KOG1241|consen 483 AVSNGQTDPATPFYEAIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNSTDDVYPMVQK 542 (859)
T ss_pred ccCCCCCCccchhHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 222 12234566788888876 234568899999999999988877665433
No 215
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=20.12 E-value=1.8e+03 Score=27.88 Aligned_cols=231 Identities=19% Similarity=0.226 Sum_probs=120.1
Q ss_pred Hhhhhhhccccc---cChhhHHHHHHHhcCCHH-----HHHHHhhhhhHHhccCCCcchHHHHHhhhhhccc-chhHHHH
Q 008865 17 FGERLNEAKDKS---QNVKDYEGIIEAAKTSLK-----AKQLAAQLIPRFFKFFPDLSSRAVDAHLDLIEEE-ELGVRVQ 87 (550)
Q Consensus 17 ~~~~L~~akd~~---~~~~~y~~Il~~~Kgs~k-----~K~LAaQfI~kffk~FP~L~e~Ai~a~lDLcEDe-d~~IR~q 87 (550)
+-+.++++++.. -..+.|+.||...=.++. .+.=.+++-..|.+.=+..+..-|...++=|-+. ++.||.-
T Consensus 658 ~Ie~~s~s~~~~~~~~v~e~~~~ll~~~l~~~n~i~~~av~av~~l~s~y~~~d~~~~~~li~~~ls~~~~~~~~~~r~g 737 (1133)
T KOG1943|consen 658 FIEQLSLSKDRLFQDFVIENWQMLLAQNLTLPNQIRDAAVSAVSDLVSTYVKADEGEEAPLITRYLSRLTKCSEERIRRG 737 (1133)
T ss_pred HHHHhhhccchhHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhcCchhhhHHHHHHHHHhcCchHHHHHHH
Confidence 345667777653 355668888876553333 4555678888899888888777778899888877 8888887
Q ss_pred HhhccccccccCcchhhh-HHHHHHHHHhhchhHHHHHHHHHHHHHHhhchHHHHHHHHHhhccCCCCCChHHHHHHHHH
Q 008865 88 AIRGLPLFCKDTPEYLSK-IVDILVQLLAAEEIVERDAVHKALMSLLRQDVKASLTALFKHIGSVDEPSTDEFIREKVLS 166 (550)
Q Consensus 88 aik~Lp~lck~~~e~~~r-iaDVL~QLLqsdd~~E~~~v~~aL~sllk~D~k~tLt~lf~qI~~~~e~~~eE~vREr~lk 166 (550)
-+=++-.+|.. .+.. .=|+|.++.-+-.|.-+ -+.-++++-..++.++.-+.+...+..-++.||-+++
T Consensus 738 ~~lal~~lp~~---~i~~~~q~~lc~~~l~~~p~d~-------~a~aR~~~V~al~~v~~~~~~~~~~~~~~k~~e~LL~ 807 (1133)
T KOG1943|consen 738 LILALGVLPSE---LIHRHLQEKLCKLVLELLPSDA-------WAEARQQNVKALAHVCKTVTSLLFSESIEKFRETLLN 807 (1133)
T ss_pred HHHHHccCcHH---hhchHHHHHHHHHHhccCcccc-------cHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHH
Confidence 77777777742 2222 45666665554333220 0111111222222222222211111223567777777
Q ss_pred HHhhhcccchhhhcCChHHHHHHHHHHHHhhhcccchHHHHHHHHHHhhccccCCCCchhHHHHHHHHHHHhhcccccCC
Q 008865 167 FIRDKVFPLKAELLKPQEEMERHITDLIKKSLEDVTGAEFRMFMDFLKSLSLFGEKAPTERMKELIGIIEGQADLDAQFN 246 (550)
Q Consensus 167 Fl~~kl~~l~~e~l~~~eE~Ee~i~~~ikKvL~dVt~~EF~l~m~lL~sL~~~~~~~~~gr~qeLv~~i~eqa~Ld~~f~ 246 (550)
-+.+.--+-..++-.| |-+.--+.|.+. ...+.+=+.+.. .-...++-.+..|+
T Consensus 808 ~lddYttd~rGDVGsw-------VReaAm~al~~~--------~~~l~~p~~ld~----~~i~~~~~~~vqQ~------- 861 (1133)
T KOG1943|consen 808 ALDDYTTDSRGDVGSW-------VREAAMKALSSL--------LDTLSSPKLLDE----DSINRIIRYFVQQA------- 861 (1133)
T ss_pred HHhhcccccCccHHHH-------HHHHHHHHHHhh--------hhhhcCcccccH----HHHHHHHHHHHHHh-------
Confidence 7666655555555433 222222221111 112222222221 12244455444431
Q ss_pred CCChhhHHHHHHHHHHhhhhhccCCCchhHHHHHHh--hhcc
Q 008865 247 VSDADHIDRLISCLYMALPFFLRGASGSKFLNYLNK--HIIP 286 (550)
Q Consensus 247 ~sD~d~idRli~cl~~Alp~fs~~v~st~f~~y~~~--~IlP 286 (550)
.|.|||+-+|+-.++-=+-...++-+.|.|.-. +|+|
T Consensus 862 ---veKIdrlre~a~~~~~qi~~~~~~i~~~~~~~~L~ei~~ 900 (1133)
T KOG1943|consen 862 ---VEKIDRLRELAASALNQIVVHSPSIPHFRHIEKLEEIFP 900 (1133)
T ss_pred ---HHHHHHHHHHHHHHHhceeecCCCCCcchHHHHHHhhcC
Confidence 356788887776665444333444555555443 6666
No 216
>PF06861 BALF1: BALF1 protein; InterPro: IPR010677 Epstein-Barr virus (strain GD1) (HHV-4), a human tumour DNA virus and a prominent member of gamma-herpesviruses, encodes homologues of cellular antiapoptotic viral Bcl-2 proteins BALF1 and BHRF1. They protect the virus from apoptosis in its host cell during virus synthesis [, ]. The virus infects B lymphocytes to establish a latent infection and yield proliferating, growth-transformed B cells in vitro. Bcl-2 genes are essential for the initial evasion of apoptosis which allows it to establish a latent infection or cause cellular transformation, or both []. Bcl-2 family proteins can inhibit or induce programmed cell death in part by counteracting the activity of other BCL-2 family members. BALF1, inhibits the antiapoptotic activity of EBV BHRF1 and of KSBcl-2 in several transfected cell lines. BALF1 fails, however, to inhibit the cellular BCL-2 family member, BCL-x(L). Thus, BALF1 acts as a negative regulator of the survival function of BHRF1, similar to the counterbalance observed between cellular BCL-2 family members [].
Probab=20.12 E-value=5e+02 Score=25.80 Aligned_cols=89 Identities=18% Similarity=0.216 Sum_probs=56.9
Q ss_pred HHHHHHHHHhhhcccchHHHHHHHHHHhhccccCCCCchhHHHHHHHHHHHhhcccccCCCCChhhHHHHHHHHHHhhhh
Q 008865 187 ERHITDLIKKSLEDVTGAEFRMFMDFLKSLSLFGEKAPTERMKELIGIIEGQADLDAQFNVSDADHIDRLISCLYMALPF 266 (550)
Q Consensus 187 Ee~i~~~ikKvL~dVt~~EF~l~m~lL~sL~~~~~~~~~gr~qeLv~~i~eqa~Ld~~f~~sD~d~idRli~cl~~Alp~ 266 (550)
|..++.+||+++ .++|.+|.++..+.+.-.+++ +++|-|++++..--+ ..-|++.|+.--+-.|.-|
T Consensus 55 E~lL~~LVk~~i----Kk~~~~~~elv~~~~~~~~~h--~~iq~l~~iir~~Y~-------D~~D~~~rL~~tLa~a~~y 121 (182)
T PF06861_consen 55 EALLCWLVKQSI----KKNFKQLAELVCQPSHNADKH--AHIQWLMSIIRAVYR-------DHYDSWSRLCATLAYASMY 121 (182)
T ss_pred HHHHHHHHHHHH----HHHHHHHHHHHhccCCCCchh--HHHHHHHHHHHHHHh-------chhhHHHHHHHHHHHHHHH
Confidence 566777887774 578999999877776655443 677878888875322 2346788888777667666
Q ss_pred hccCCC---------chhHHHHHHhhhcccC
Q 008865 267 FLRGAS---------GSKFLNYLNKHIIPVF 288 (550)
Q Consensus 267 fs~~v~---------st~f~~y~~~~IlP~l 288 (550)
.-+.-. ++.+-+|++.+=.+.|
T Consensus 122 ~~~~l~~d~e~~s~v~~~lA~Fy~~~r~~Wl 152 (182)
T PF06861_consen 122 AMRNLLNDHENASLVSHALAHFYLRYRRAWL 152 (182)
T ss_pred HHHHhcCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 533322 3444555555544433
Done!