Query 008865
Match_columns 550
No_of_seqs 93 out of 104
Neff 5.0
Searched_HMMs 29240
Date Mon Mar 25 13:32:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008865.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008865hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3u0r_A Apoptosis inhibitor 5; 100.0 3E-144 1E-148 1151.6 42.8 445 8-500 4-466 (507)
2 2vgl_B AP-2 complex subunit be 98.2 0.00041 1.4E-08 75.6 26.3 134 31-170 48-186 (591)
3 4fdd_A Transportin-1; heat rep 98.0 0.00019 6.4E-09 80.7 18.1 283 37-333 95-412 (852)
4 4fdd_A Transportin-1; heat rep 97.9 0.0013 4.4E-08 73.9 22.6 137 29-170 125-282 (852)
5 1w63_A Adapter-related protein 97.8 0.00096 3.3E-08 73.3 20.2 133 34-170 72-205 (618)
6 2vgl_A Adaptor protein complex 97.8 0.0018 6.3E-08 71.5 21.4 284 43-361 123-437 (621)
7 2jdq_A Importin alpha-1 subuni 97.7 0.0027 9.4E-08 64.4 20.0 300 32-362 64-395 (450)
8 1qgr_A Protein (importin beta 97.7 0.004 1.4E-07 68.8 22.6 128 37-170 95-243 (876)
9 1ibr_B P95, importin beta-1 su 97.7 0.0061 2.1E-07 61.7 22.3 128 37-170 95-243 (462)
10 2bpt_A Importin beta-1 subunit 97.7 0.026 8.8E-07 62.2 28.8 283 36-333 99-423 (861)
11 1b3u_A Protein (protein phosph 97.6 0.0015 5.1E-08 68.5 17.8 131 34-169 12-151 (588)
12 2bpt_A Importin beta-1 subunit 97.6 0.0046 1.6E-07 68.1 21.9 296 44-361 194-533 (861)
13 4hxt_A De novo protein OR329; 97.6 0.0071 2.4E-07 56.1 19.6 131 35-170 5-154 (252)
14 1b3u_A Protein (protein phosph 97.6 0.0029 9.9E-08 66.3 18.8 155 36-201 285-453 (588)
15 2jdq_A Importin alpha-1 subuni 97.6 0.0098 3.3E-07 60.3 22.1 296 34-363 22-354 (450)
16 1wa5_B Importin alpha subunit; 97.5 0.01 3.4E-07 62.8 22.6 134 31-169 86-240 (530)
17 4db6_A Armadillo repeat protei 97.5 0.0028 9.7E-08 58.0 16.0 136 30-170 10-164 (210)
18 2vgl_B AP-2 complex subunit be 97.5 0.0093 3.2E-07 64.9 22.6 120 43-169 98-227 (591)
19 1ibr_B P95, importin beta-1 su 97.5 0.0068 2.3E-07 61.4 20.2 288 43-358 49-396 (462)
20 1wa5_B Importin alpha subunit; 97.5 0.00096 3.3E-08 70.7 14.3 298 33-361 131-461 (530)
21 4b8j_A Importin subunit alpha- 97.5 0.0063 2.1E-07 64.1 20.4 300 30-365 72-409 (528)
22 4b8j_A Importin subunit alpha- 97.5 0.00081 2.8E-08 71.0 13.2 298 34-361 119-447 (528)
23 4hxt_A De novo protein OR329; 97.5 0.0029 9.8E-08 58.8 15.6 133 33-170 45-196 (252)
24 4db8_A Armadillo-repeat protei 97.5 0.0057 1.9E-07 57.5 17.4 138 28-170 8-164 (252)
25 1qgr_A Protein (importin beta 97.4 0.01 3.5E-07 65.5 21.5 295 44-354 187-538 (876)
26 4db6_A Armadillo repeat protei 97.4 0.0013 4.6E-08 60.2 11.6 132 33-169 55-205 (210)
27 2qk2_A LP04448P; mini spindles 97.3 0.02 6.7E-07 54.5 19.5 153 43-203 27-190 (242)
28 1xqr_A HSPBP1 protein; armadil 97.2 0.0039 1.3E-07 63.0 14.2 132 34-170 83-235 (296)
29 3ltj_A Alpharep-4; protein eng 97.0 0.023 7.9E-07 51.9 15.8 121 29-169 11-132 (201)
30 4db8_A Armadillo-repeat protei 97.0 0.011 3.7E-07 55.6 13.7 132 34-170 56-206 (252)
31 3ltm_A Alpha-REP4; protein eng 97.0 0.026 8.8E-07 52.0 15.9 121 29-169 16-137 (211)
32 1oyz_A Hypothetical protein YI 96.9 0.014 4.8E-07 56.2 14.4 115 43-169 103-217 (280)
33 3ltm_A Alpha-REP4; protein eng 96.8 0.0092 3.1E-07 55.0 11.6 119 31-169 49-168 (211)
34 3ltj_A Alpharep-4; protein eng 96.8 0.011 3.7E-07 54.1 11.9 120 31-170 44-164 (201)
35 1u6g_C TIP120 protein, CAND1; 96.8 0.17 5.7E-06 59.2 24.1 297 43-356 345-682 (1230)
36 1oyz_A Hypothetical protein YI 96.7 0.25 8.6E-06 47.3 21.6 123 35-169 26-153 (280)
37 3gs3_A Symplekin, LD45768P; he 96.7 0.012 4.2E-07 58.8 11.8 80 63-150 48-127 (257)
38 1u6g_C TIP120 protein, CAND1; 96.6 0.036 1.2E-06 64.8 17.4 136 33-172 7-162 (1230)
39 3o2t_A Symplekin; heat repeat, 96.6 0.0049 1.7E-07 65.1 8.6 75 61-135 56-130 (386)
40 1w63_A Adapter-related protein 96.5 0.065 2.2E-06 58.8 17.1 116 48-169 294-410 (618)
41 2z6g_A B-catenin; FULL-length, 96.3 0.098 3.3E-06 59.0 17.5 127 36-169 119-259 (780)
42 3ul1_B Importin subunit alpha- 96.2 0.44 1.5E-05 50.6 21.5 117 33-149 58-195 (510)
43 1te4_A Conserved protein MTH18 96.2 0.026 8.8E-07 48.9 9.5 112 36-168 16-128 (131)
44 2vgl_A Adaptor protein complex 95.9 0.67 2.3E-05 51.1 21.4 130 34-170 76-213 (621)
45 3ul1_B Importin subunit alpha- 95.8 0.44 1.5E-05 50.6 19.2 119 43-166 113-254 (510)
46 3tpo_A Importin subunit alpha- 95.8 0.41 1.4E-05 50.9 18.6 118 32-149 76-214 (529)
47 1te4_A Conserved protein MTH18 95.6 0.019 6.3E-07 49.8 6.2 85 34-130 44-129 (131)
48 3gs3_A Symplekin, LD45768P; he 95.4 0.039 1.3E-06 55.1 8.5 139 7-169 29-169 (257)
49 2z6h_A Catenin beta-1, beta-ca 95.3 3.3 0.00011 44.9 24.3 172 34-216 100-290 (644)
50 1xqr_A HSPBP1 protein; armadil 95.3 0.037 1.3E-06 55.8 8.0 121 43-169 52-192 (296)
51 1jdh_A Beta-catenin; beta-cate 95.3 0.57 1.9E-05 48.5 17.1 102 63-169 12-126 (529)
52 2qk2_A LP04448P; mini spindles 95.2 0.16 5.4E-06 48.2 11.7 99 35-135 101-206 (242)
53 1jdh_A Beta-catenin; beta-cate 95.2 0.79 2.7E-05 47.4 17.9 170 35-216 104-293 (529)
54 2z6h_A Catenin beta-1, beta-ca 95.1 0.71 2.4E-05 50.2 18.1 103 62-169 8-123 (644)
55 2z6g_A B-catenin; FULL-length, 95.0 1.5 5.1E-05 49.4 20.9 129 35-169 153-301 (780)
56 3tpo_A Importin subunit alpha- 94.5 1.7 5.7E-05 46.2 18.7 119 46-169 224-360 (529)
57 3l9t_A Putative uncharacterize 94.4 0.1 3.5E-06 51.8 8.4 104 43-149 116-222 (240)
58 2qk1_A Protein STU2; STU2P, XM 94.4 0.81 2.8E-05 44.5 14.8 137 32-175 19-177 (249)
59 1wa5_C Importin alpha RE-expor 94.1 1.8 6E-05 49.6 19.0 150 44-199 471-651 (960)
60 2qk1_A Protein STU2; STU2P, XM 94.1 0.43 1.5E-05 46.4 12.0 136 31-170 55-217 (249)
61 2db0_A 253AA long hypothetical 92.7 7.9 0.00027 37.8 17.7 90 67-161 31-124 (253)
62 2x1g_F Cadmus; transport prote 92.5 6.2 0.00021 44.8 20.0 89 44-135 519-616 (971)
63 3m1i_C Exportin-1; heat repeat 91.4 6.3 0.00022 45.5 18.7 81 57-137 529-621 (1049)
64 2x19_B Importin-13; nuclear tr 91.2 16 0.00054 41.2 21.3 138 248-395 785-930 (963)
65 3o2t_A Symplekin; heat repeat, 90.9 1.5 5.3E-05 46.1 11.8 140 7-170 39-180 (386)
66 3tjz_B Coatomer subunit gamma; 90.5 0.94 3.2E-05 47.1 9.6 94 43-139 80-173 (355)
67 3ibv_A Exportin-T; karyopherin 90.4 28 0.00096 40.5 22.9 267 42-337 506-800 (980)
68 3ibv_A Exportin-T; karyopherin 89.9 12 0.00041 43.5 19.3 280 14-303 619-956 (980)
69 1xm9_A Plakophilin 1; armadill 89.9 0.71 2.4E-05 48.4 8.3 106 43-148 14-136 (457)
70 3b2a_A TON_1937, putative unch 89.6 3.9 0.00013 40.9 12.6 162 11-179 51-225 (265)
71 3opb_A SWI5-dependent HO expre 89.5 1.2 4.2E-05 50.8 10.3 96 68-170 606-725 (778)
72 2x19_B Importin-13; nuclear tr 88.3 37 0.0013 38.1 24.4 91 43-135 501-600 (963)
73 3now_A UNC-45 protein, SD10334 86.6 8.3 0.00029 44.2 14.8 162 11-198 8-178 (810)
74 1wa5_C Importin alpha RE-expor 86.3 42 0.0014 38.2 20.5 57 43-99 97-154 (960)
75 3now_A UNC-45 protein, SD10334 84.5 17 0.00059 41.6 16.1 131 34-169 538-690 (810)
76 1lsh_A Lipovitellin (LV-1N, LV 84.4 70 0.0024 37.5 22.2 137 8-148 325-480 (1056)
77 2npp_B PP2A, B subunit, serine 84.3 40 0.0014 36.2 17.8 62 284-352 289-350 (449)
78 2x1g_F Cadmus; transport prote 83.8 13 0.00045 42.1 14.8 24 248-271 797-820 (971)
79 3jxy_A Alkylpurine DNA glycosy 81.3 2.4 8.2E-05 41.0 6.4 98 45-147 111-208 (232)
80 2b6c_A Hypothetical protein EF 81.1 5.2 0.00018 38.2 8.7 87 53-144 112-198 (220)
81 3nmw_A APC variant protein; AR 80.0 1.6 5.6E-05 44.8 5.0 69 69-137 264-337 (354)
82 2jak_A Serine/threonine-protei 79.9 54 0.0018 34.6 16.5 61 285-352 302-362 (392)
83 1lsh_A Lipovitellin (LV-1N, LV 79.2 34 0.0012 40.1 16.3 222 104-365 288-515 (1056)
84 3tt9_A Plakophilin-2; cell adh 78.2 6.5 0.00022 38.3 8.4 97 35-131 11-121 (233)
85 3u0r_A Apoptosis inhibitor 5; 77.5 78 0.0027 34.5 17.1 102 68-170 29-130 (507)
86 3grl_A General vesicular trans 77.4 98 0.0034 34.7 20.8 60 106-170 123-192 (651)
87 4ffb_C Protein STU2; tubulin f 76.7 15 0.00053 35.3 10.7 131 43-175 67-214 (278)
88 3opb_A SWI5-dependent HO expre 75.8 57 0.002 37.3 16.3 137 47-215 94-238 (778)
89 3l6x_A Catenin delta-1; cateni 74.9 8.1 0.00028 42.7 9.0 105 30-134 46-163 (584)
90 3nmz_A APC variant protein; pr 74.3 2.5 8.7E-05 45.1 4.7 69 69-137 380-453 (458)
91 4hat_C Exportin-1; heat repeat 73.2 27 0.00092 40.9 13.2 291 68-402 495-835 (1023)
92 1xm9_A Plakophilin 1; armadill 72.7 8.7 0.0003 40.1 8.2 96 70-169 4-112 (457)
93 3fga_B Serine/threonine-protei 72.1 1E+02 0.0035 32.5 17.7 59 287-352 259-317 (403)
94 3l9t_A Putative uncharacterize 72.1 14 0.00048 36.6 9.0 92 66-170 69-165 (240)
95 3nmw_A APC variant protein; AR 72.1 10 0.00035 38.8 8.4 67 68-134 73-156 (354)
96 1hu3_A EIF4GII; heat repeat, t 71.5 21 0.00073 34.9 10.3 152 187-358 8-196 (260)
97 3nmz_A APC variant protein; pr 70.2 11 0.00036 40.3 8.3 66 69-134 190-272 (458)
98 4ady_A RPN2, 26S proteasome re 69.6 11 0.00039 44.0 8.9 94 67-167 576-670 (963)
99 1lrv_A LRV, leucine-rich repea 69.5 1.8 6E-05 42.6 1.9 56 53-128 42-97 (244)
100 3tjz_B Coatomer subunit gamma; 69.4 18 0.00062 37.4 9.6 113 60-178 59-172 (355)
101 3tt9_A Plakophilin-2; cell adh 67.8 15 0.0005 35.8 8.0 66 70-135 10-82 (233)
102 3dad_A FH1/FH2 domain-containi 65.5 1.1E+02 0.0039 31.5 14.5 96 33-135 119-229 (339)
103 3gjx_A Exportin-1; transport, 62.7 1.3E+02 0.0043 35.7 16.0 289 69-401 522-860 (1073)
104 3l6x_A Catenin delta-1; cateni 62.2 12 0.0004 41.4 6.9 97 65-165 45-155 (584)
105 4ffb_C Protein STU2; tubulin f 61.6 1.1E+02 0.0039 29.1 13.6 63 250-312 153-216 (278)
106 3s4w_B Protein FACD2, fanconi 61.2 27 0.00093 42.2 10.1 52 66-119 155-206 (1323)
107 3grl_A General vesicular trans 60.4 13 0.00045 41.7 6.8 115 49-169 108-237 (651)
108 4hat_C Exportin-1; heat repeat 59.9 2.6E+02 0.0088 32.7 19.3 73 249-326 208-284 (1023)
109 2db0_A 253AA long hypothetical 59.2 60 0.002 31.7 10.2 96 43-138 119-214 (253)
110 4ady_A RPN2, 26S proteasome re 58.4 8.1 0.00028 45.2 4.9 101 29-136 574-678 (963)
111 3b2a_A TON_1937, putative unch 55.7 87 0.003 31.3 11.0 105 29-135 108-219 (265)
112 3m1i_C Exportin-1; heat repeat 52.3 2.4E+02 0.0083 32.3 15.9 248 68-330 344-645 (1049)
113 4fu3_A Regulation of nuclear P 50.4 14 0.00047 32.3 4.0 50 66-120 5-54 (135)
114 3hjl_A Flagellar motor switch 48.1 2.2E+02 0.0075 29.1 13.2 143 23-167 69-240 (329)
115 1wj7_A Hypothetical protein (R 45.0 26 0.0009 30.5 4.8 34 440-480 58-92 (104)
116 3gjx_A Exportin-1; transport, 44.4 4.6E+02 0.016 30.9 21.6 102 30-136 26-143 (1073)
117 1t06_A Hypothetical protein; s 43.7 83 0.0028 30.2 8.8 82 54-139 98-185 (235)
118 3qml_C Protein SLS1, nucleotid 43.6 2.8E+02 0.0095 28.4 12.9 173 80-263 82-298 (315)
119 3k62_A FEM-3 mRNA-binding fact 38.0 1.1E+02 0.0037 32.0 9.2 208 91-330 30-262 (412)
120 1lrv_A LRV, leucine-rich repea 36.1 11 0.00037 36.9 1.1 85 39-165 153-238 (244)
121 3a6p_A Exportin-5; exportin-5, 35.9 2.2E+02 0.0075 33.7 12.4 54 63-116 524-583 (1204)
122 2w9y_A CE-FAR-7, fatty acid/re 35.7 7.8 0.00027 35.5 -0.0 112 185-305 11-137 (140)
123 2vso_E Eukaryotic initiation f 35.6 1.2E+02 0.0043 29.7 8.8 72 187-265 33-108 (284)
124 2of3_A ZYG-9; multifunctional 34.1 29 0.00098 34.6 3.8 29 108-136 210-238 (266)
125 3a6p_A Exportin-5; exportin-5, 33.8 1.5E+02 0.005 35.2 10.4 99 34-132 531-655 (1204)
126 3oc3_A Helicase MOT1, MOT1; re 33.3 50 0.0017 37.2 5.8 90 42-135 273-362 (800)
127 1ho8_A Vacuolar ATP synthase s 32.8 34 0.0012 37.0 4.4 53 43-95 417-474 (480)
128 3lay_A Zinc resistance-associa 31.6 14 0.00046 34.9 0.9 14 419-432 104-117 (175)
129 4flb_A Regulation of nuclear P 31.5 1.1E+02 0.0039 26.3 6.9 49 67-120 7-55 (132)
130 3u5c_h Suppressor protein STM1 31.2 10 0.00035 38.2 0.0 31 518-548 213-249 (273)
131 2of3_A ZYG-9; multifunctional 28.7 2.5E+02 0.0085 27.8 9.6 121 43-170 99-233 (266)
132 3gvo_A Pumilio 2, pumilio homo 28.6 1.3E+02 0.0046 30.1 7.8 71 92-175 28-103 (351)
133 2knz_A Ubiquilin-4; cytoplasm, 28.3 24 0.00083 26.5 1.7 22 441-462 31-53 (53)
134 3fh3_A Putative ECF-type sigma 28.3 1.4E+02 0.0048 27.7 7.0 102 190-306 25-150 (158)
135 3ghg_A Fibrinogen alpha chain; 26.7 5.9E+02 0.02 27.9 12.5 154 76-256 35-205 (562)
136 3d9j_A RNA-binding protein 16; 25.1 2E+02 0.007 25.5 7.6 51 69-119 6-56 (145)
137 1sz9_A PCF11 protein; RNA poly 24.4 1.7E+02 0.0058 26.2 6.9 82 85-170 23-111 (144)
138 4gqb_C Histone H4 peptide; TIM 23.5 29 0.001 22.4 1.1 6 537-542 10-15 (26)
139 2pk2_A Cyclin-T1, protein TAT; 23.4 17 0.00059 37.4 0.0 11 160-170 37-47 (358)
140 2ozb_B U4/U6 small nuclear rib 23.3 3E+02 0.01 27.2 9.0 39 29-67 12-54 (260)
141 3fx7_A Putative uncharacterize 23.1 1.1E+02 0.0036 26.2 4.8 33 383-415 49-81 (94)
142 3clj_A Protein NRD1; CTD-inter 22.4 2.5E+02 0.0085 25.8 7.6 107 67-181 7-139 (157)
143 1d9c_A Interferon-gamma; helic 22.0 45 0.0015 29.8 2.4 55 9-65 6-60 (121)
144 2yu0_A Interferon-activable pr 21.5 1.5E+02 0.0052 25.1 5.5 24 194-218 10-33 (94)
145 3rk6_A Polyadenylate-binding p 20.6 2.7E+02 0.0093 26.7 8.0 157 186-361 15-193 (234)
146 2rig_A Interferon-gamma; cytok 20.4 57 0.0019 29.9 2.8 55 9-65 6-60 (144)
No 1
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=100.00 E-value=3.3e-144 Score=1151.60 Aligned_cols=445 Identities=36% Similarity=0.593 Sum_probs=407.8
Q ss_pred hHHHHHHHHHhhhhhhcccc-ccChhhHHHHHHHhcCCHHHHHHHhhhhhHHhccCCCcchHHHHHhhhhhcccchhHHH
Q 008865 8 AKQIEKLYEFGERLNEAKDK-SQNVKDYEGIIEAAKTSLKAKQLAAQLIPRFFKFFPDLSSRAVDAHLDLIEEEELGVRV 86 (550)
Q Consensus 8 ~~~ie~LY~~~~~L~~akd~-~~~~~~y~~Il~~~Kgs~k~K~LAaQfI~kffk~FP~L~e~Ai~a~lDLcEDed~~IR~ 86 (550)
.++||+||++||||+||+|+ ++|+++|++||+|+||++++|+|||||||||||+||+|+++|||||+|||||+|++||+
T Consensus 4 ~~~ie~LY~~~~~L~da~dk~~~~~~~y~~Il~~~kg~~k~K~LaaQ~I~kffk~FP~l~~~Ai~a~lDLcEDed~~IR~ 83 (507)
T 3u0r_A 4 MPTVEELYRNYGILADATEQVGQHKDAYQVILDGVKGGTKEKRLAAQFIPKFFKHFPELADSAINAQLDLCEDEDVSIRR 83 (507)
T ss_dssp -CCHHHHHHHHHHHHHTGGGGGGGHHHHHHHHHGGGSCHHHHHHHHHHHHHHGGGCGGGHHHHHHHHHHHHTCSSHHHHH
T ss_pred cchHHHHHHHhhHhhhccccccccHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcccHHHHH
Confidence 34699999999999999999 69999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhccccccccCcchhhhHHHHHHHHHhhchhHHHHHHHHHHHHHHhhchHHHHHHHHHhhccCCCCCChHHHHHHHHH
Q 008865 87 QAIRGLPLFCKDTPEYLSKIVDILVQLLAAEEIVERDAVHKALMSLLRQDVKASLTALFKHIGSVDEPSTDEFIREKVLS 166 (550)
Q Consensus 87 qaik~Lp~lck~~~e~~~riaDVL~QLLqsdd~~E~~~v~~aL~sllk~D~k~tLt~lf~qI~~~~e~~~eE~vREr~lk 166 (550)
||||+||.|||+ +|++||||||+||||+||++|+++|+|||++||++||++||++||+||. .+||.+|||+|+
T Consensus 84 qaik~Lp~~ck~--~~i~kiaDvL~QlLqtdd~~E~~~V~~sL~sllk~Dpk~tl~~lf~~i~-----~~~e~~Rer~lk 156 (507)
T 3u0r_A 84 QAIKELPQFATG--ENLPRVADILTQLLQTDDSAEFNLVNNALLSIFKMDAKGTLGGLFSQIL-----QGEDIVRERAIK 156 (507)
T ss_dssp HHHHHGGGGCCT--TCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH-----HSCHHHHHHHHH
T ss_pred HHHHhhHHHhhh--hhhhhHHHHHHHHHhccchHHHHHHHHHHHHHHhcChHHHHHHHHHHHc-----ccchHHHHHHHH
Confidence 999999999999 9999999999999999999999999999999999999999999999999 678999999999
Q ss_pred HHhhhcccchhhhcCChHHHHHHHHHHHHhhhcccchHHHHHHHHHHhhccccCCCCchhHHHHHHHHHHHhhcccccCC
Q 008865 167 FIRDKVFPLKAELLKPQEEMERHITDLIKKSLEDVTGAEFRMFMDFLKSLSLFGEKAPTERMKELIGIIEGQADLDAQFN 246 (550)
Q Consensus 167 Fl~~kl~~l~~e~l~~~eE~Ee~i~~~ikKvL~dVt~~EF~l~m~lL~sL~~~~~~~~~gr~qeLv~~i~eqa~Ld~~f~ 246 (550)
||++||++++.+++ ++|+|++|+++|+|+|+|||++||++||+||+++++|++ +.|| |+||+++.+||+|+.+|+
T Consensus 157 Fi~~kl~~l~~~~l--~~E~E~~i~~~ikK~L~DVT~~EF~L~m~lL~~lkl~~t--~~g~-qeLv~ii~eQa~L~~~f~ 231 (507)
T 3u0r_A 157 FLSTKLKTLPDEVL--TKEVEELILTESKKVLEDVTGEEFVLFMKILSGLKSLQT--VSGR-QQLVELVAEQADLEQTFN 231 (507)
T ss_dssp HHHHHGGGSCTTTS--CHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHTSGGGSS--HHHH-HHHHHHHHHHHTTTSCCC
T ss_pred HHHHHHhhcchhhc--cHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhcccccC--chHH-HHHHHHHHHHHhccCCCC
Confidence 99999999999999 799999999999999999999999999999999999984 6677 999999999999999999
Q ss_pred CCChhhHHHHHHHHHHhhhhhccCCCchhHHHHHHhhhcccCCCCChh-----hhhhHHHHHHHhCCCCC-chhhhhhhH
Q 008865 247 VSDADHIDRLISCLYMALPFFLRGASGSKFLNYLNKHIIPVFDKLPEE-----RKLDLLKALAEISPYTT-PQDSRQILP 320 (550)
Q Consensus 247 ~sD~d~idRli~cl~~Alp~fs~~v~st~f~~y~~~~IlP~l~~L~~~-----~kl~lLK~lAE~s~~~~-~~~a~~~l~ 320 (550)
++|+|+|||+|+|+++|+||||++++|++||+|||++|||+|++|++. .|+++||+||||||||+ .++++++++
T Consensus 232 ~sD~e~vdRlI~C~~~ALP~FS~~v~StkFv~y~~~kIlP~l~~L~e~~~~~~~kL~LLK~lAE~s~~~~~~e~a~~~l~ 311 (507)
T 3u0r_A 232 PSDPDCVDRLLQCTRQAVPLFSKNVHSTRFVTYFCEQVLPNLGTLTTPVEGLDIQLEVLKLLAEMSSFCGDMEKLETNLR 311 (507)
T ss_dssp SSCHHHHHHHHHHHHHHGGGCBTTBCCHHHHHHHHHHTGGGTTCCCCC--CCCHHHHHHHHHHHHHTTCCCCTTHHHHHH
T ss_pred CcCHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHhhccchhhccccccchHHHHHHHHHHHHHccCCCccchHHHHHH
Confidence 999999999999999999999999999999999999999999999763 89999999999999999 677999999
Q ss_pred HHHHHHHhhCCCCCC----------CCCccchHHHHHHHHHHHHhhhcCchhhhhccCcccccCCCCCccCcChhhhHHH
Q 008865 321 SVAVLLKKYMPLRKT----------GGEEMNFTYVECLLYTFHHLAHKAPNATNSLCGYKIVTGQPSDRLGEDFSDCYKD 390 (550)
Q Consensus 321 ~i~~~L~~~mP~~~~----------~~~~l~fS~vEcLL~afh~L~~k~p~~l~~~cg~k~~Tgqpsd~lgeD~~~~~kd 390 (550)
+||++|++|||.||+ ++|+|||||||||||+||+||+|+|+|+.+ +|++++|||
T Consensus 312 ~iy~~L~~ymP~~p~~~~~~~~~~~~~p~l~fS~vECLLy~fH~L~~k~P~~l~e----------------~~~~~~lkd 375 (507)
T 3u0r_A 312 KLFDKLLEYMPLPPEEAENGENAGNEEPKLQFSYVECLLYSFHQLGRKLPDFLTA----------------KLNAEKLKD 375 (507)
T ss_dssp HHHHHHHTTSCCCC--------------CCCHHHHHHHHHHHHHHHTTCTHHHHC----------------C--CCTTHH
T ss_pred HHHHHHHHHCCCCcccccccccccccCcccchhHHHHHHHHHHHHhhhChhhhcc----------------cccHHHHHH
Confidence 999999999999996 458999999999999999999999999843 256899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhHhhcCChHHHHHHHhhhccchhhhhhhccHHHHhhhhhcCCCCccCCCccc
Q 008865 391 FTERLTTVEDLTRATMKKLTQGLADHNKEMAAAKTDEAKEKIKTQKQNTTTGLRTCNNILAMSKPLHSKTPSFIGDKSVN 470 (550)
Q Consensus 391 Fr~RLqyl~~~~q~yikkl~~~l~~~~K~~~~~k~de~k~k~~~~~q~~~~aL~~~~NI~~li~~l~~~pPsf~~~~~i~ 470 (550)
||.|||||+|++|+|||+|+++|++ |+++++|+||||+|+ +|||||+||++||++|||+||+|++ +||
T Consensus 376 fr~RLqy~ar~~q~yikkL~~~~~~--K~~~~~kteenk~kv--------~alkt~~NI~~likdlfh~pPsFk~--~v~ 443 (507)
T 3u0r_A 376 FKIRLQYFARGLQVYIRQLRLALQG--KTGEALKTEENKIKV--------VALKITNNINVLIKDLFHIPPSYKS--TVT 443 (507)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTT--CCTTGGGSHHHHHHH--------HHHHHHHHHHHHHHHCC--CCCCCC--CCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc--cchhhhcchHHHHHH--------HHHHHHhhHHHHHHHHhcCCCCcee--eee
Confidence 9999999999999999999999987 999999999999998 7999999999999999999999998 999
Q ss_pred ccccccCCCCCCCCCCcCCCCCCC-CCCCCC
Q 008865 471 LSWKEATKPSVPSTTTASGGKRPA-SINGSG 500 (550)
Q Consensus 471 lSW~~~~k~~~~~~~~~~~~~r~~-~~~g~~ 500 (550)
+||+++++ ..+|||++ ..+|++
T Consensus 444 lSWk~~~~--------~~~~kr~~~~~~~~~ 466 (507)
T 3u0r_A 444 LSWKPVQK--------VEIGQKRASEDTTSG 466 (507)
T ss_dssp CTTSCC-------------------------
T ss_pred eeeecccc--------cccCCCCCCccCCCC
Confidence 99998764 34688887 444444
No 2
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=98.20 E-value=0.00041 Score=75.58 Aligned_cols=134 Identities=13% Similarity=0.203 Sum_probs=110.2
Q ss_pred hhhHHHHHHHhc-CCHHHHHHHhhhhhHHhccCCCcchHHHHHhhhhhcccchhHHHHHhhccccccccCcchhhhHHHH
Q 008865 31 VKDYEGIIEAAK-TSLKAKQLAAQLIPRFFKFFPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDI 109 (550)
Q Consensus 31 ~~~y~~Il~~~K-gs~k~K~LAaQfI~kffk~FP~L~e~Ai~a~lDLcEDed~~IR~qaik~Lp~lck~~~e~~~riaDV 109 (550)
...|-.++.... .+...|+++...+..|++.-|++.--++|++...+.|.++.||..|++.|..++ +++...-+...
T Consensus 48 ~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~e~~~l~~n~l~kdL~~~n~~ir~~AL~~L~~i~--~~~~~~~l~~~ 125 (591)
T 2vgl_B 48 SSLFPDVVNCMQTDNLELKKLVYLYLMNYAKSQPDMAIMAVNSFVKDCEDPNPLIRALAVRTMGCIR--VDKITEYLCEP 125 (591)
T ss_dssp GGGHHHHHHTTSSSCHHHHHHHHHHHHHHHHHSHHHHHTTHHHHGGGSSSSSHHHHHHHHHHHHTCC--SGGGHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHcccCchHHHHHHHHHHHHcCCCCHHHHHHHHHHHHcCC--hHHHHHHHHHH
Confidence 445777777776 778999999999999999999999999999999999999999999999999997 67888889999
Q ss_pred HHHHHhhchhHHHHHHHHHHHHHHhhchHHH----HHHHHHhhccCCCCCChHHHHHHHHHHHhh
Q 008865 110 LVQLLAAEEIVERDAVHKALMSLLRQDVKAS----LTALFKHIGSVDEPSTDEFIREKVLSFIRD 170 (550)
Q Consensus 110 L~QLLqsdd~~E~~~v~~aL~sllk~D~k~t----Lt~lf~qI~~~~e~~~eE~vREr~lkFl~~ 170 (550)
|.++|.+.++..+..+=.+|..+++.+|... +-..+.++.. +.+..||.-++.-|..
T Consensus 126 l~~~L~d~~~~VRk~A~~al~~i~~~~p~~~~~~~~~~~l~~lL~----d~d~~V~~~A~~aL~~ 186 (591)
T 2vgl_B 126 LRKCLKDEDPYVRKTAAVCVAKLHDINAQMVEDQGFLDSLRDLIA----DSNPMVVANAVAALSE 186 (591)
T ss_dssp HHHHSSCSCHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHTTS----CSCHHHHHHHHHHHHH
T ss_pred HHHHcCCCChHHHHHHHHHHHHHHhhChhhcccccHHHHHHHHhC----CCChhHHHHHHHHHHH
Confidence 9999999999999999999999998876532 2233444442 3455788888877665
No 3
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=97.95 E-value=0.00019 Score=80.67 Aligned_cols=283 Identities=14% Similarity=0.136 Sum_probs=163.9
Q ss_pred HHHHhc-CCHHHHHHHhhhhhHHhcc-CCCcchHHHHHhhhhhcccchhHHHHHhhccccccccCcch---------hhh
Q 008865 37 IIEAAK-TSLKAKQLAAQLIPRFFKF-FPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEY---------LSK 105 (550)
Q Consensus 37 Il~~~K-gs~k~K~LAaQfI~kffk~-FP~L~e~Ai~a~lDLcEDed~~IR~qaik~Lp~lck~~~e~---------~~r 105 (550)
++.+.. .++..+.-+|+.|...+++ ||+--.+.+..++.++.+.+..+|..|+..|-.+|++.++. +..
T Consensus 95 ll~~l~~~~~~vr~~~a~~i~~ia~~~~~~~wp~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~ 174 (852)
T 4fdd_A 95 CLNNIGDSSPLIRATVGILITTIASKGELQNWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNI 174 (852)
T ss_dssp HHTTTTCSSHHHHHHHHHHHHHHHHHTTTTTCTTHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHH
Confidence 344444 6788999999999998876 67777788999999999999999999999999999988766 344
Q ss_pred HHHHHHHHHhhchhHHHHHHHHHHHHHHhhchH-------HHHHHHHHhhccCCCCCChHHHHHHHHHHHhhhcccchhh
Q 008865 106 IVDILVQLLAAEEIVERDAVHKALMSLLRQDVK-------ASLTALFKHIGSVDEPSTDEFIREKVLSFIRDKVFPLKAE 178 (550)
Q Consensus 106 iaDVL~QLLqsdd~~E~~~v~~aL~sllk~D~k-------~tLt~lf~qI~~~~e~~~eE~vREr~lkFl~~kl~~l~~e 178 (550)
+...|.++|+++++..+..+-++|..+++..+. ..+..++..+. ++++.+|..++.-|..=+. ...+
T Consensus 175 il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~~~~~~~~~~l~~l~~~~~-----d~~~~vr~~a~~~L~~l~~-~~~~ 248 (852)
T 4fdd_A 175 MIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFIENLFALAG-----DEEPEVRKNVCRALVMLLE-VRMD 248 (852)
T ss_dssp HHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCHHHHTSHHHHHHHHHHHHT-----CCCHHHHHHHHHHHHHHHH-HCHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcC-----CCCHHHHHHHHHHHHHHHH-hCHH
Confidence 667778888888888888888899887765443 45666776654 5667888877776553222 2222
Q ss_pred hcCChHHHHHHHHHHHHhhhcccchHHH-HHHHHHHhhccc---cCC-CCchhHHHHHHHHHHHhhcc--------cccC
Q 008865 179 LLKPQEEMERHITDLIKKSLEDVTGAEF-RMFMDFLKSLSL---FGE-KAPTERMKELIGIIEGQADL--------DAQF 245 (550)
Q Consensus 179 ~l~~~eE~Ee~i~~~ikKvL~dVt~~EF-~l~m~lL~sL~~---~~~-~~~~gr~qeLv~~i~eqa~L--------d~~f 245 (550)
.+.+ -++ .++..+.+.+.|.. ++. ..-++++..+-- ... ..| ....|+..+...... +++.
T Consensus 249 ~~~~--~l~-~l~~~l~~~~~~~~-~~vr~~a~e~l~~l~~~~~~~~~~~~--~~~~l~p~ll~~l~~~e~d~~~~~~d~ 322 (852)
T 4fdd_A 249 RLLP--HMH-NIVEYMLQRTQDQD-ENVALEACEFWLTLAEQPICKDVLVR--HLPKLIPVLVNGMKYSDIDIILLKGDV 322 (852)
T ss_dssp HHGG--GHH-HHHHHHHHHHTCSS-HHHHHHHHHHHHHHTTSTTHHHHHTT--THHHHHHHHHHHTSCCHHHHHHHHC--
T ss_pred HHHH--HHH-HHHHHHHHHccCCc-HHHHHHHHHHHHHHhcchhHHHHHHH--HHHHHHHHHHHHcCCcHhHHHHhcCCc
Confidence 2222 222 25555666666643 222 122333333211 000 001 124566555443210 0110
Q ss_pred --CCCChhh--HHHHHHHHHHhhhhhccCCCchhHHHHHHhhhcccCCCCChhhhhhHHHHHHHhCCCCCchhhhhhhHH
Q 008865 246 --NVSDADH--IDRLISCLYMALPFFLRGASGSKFLNYLNKHIIPVFDKLPEERKLDLLKALAEISPYTTPQDSRQILPS 321 (550)
Q Consensus 246 --~~sD~d~--idRli~cl~~Alp~fs~~v~st~f~~y~~~~IlP~l~~L~~~~kl~lLK~lAE~s~~~~~~~a~~~l~~ 321 (550)
+..|.|. --.+-.+.-.++..++...+ ...+..+...+...+.+-....|...+..|..++..|+. .....++.
T Consensus 323 ~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~-~~~~~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~-~~~~~l~~ 400 (852)
T 4fdd_A 323 EGGSGGDDTISDWNLRKCSAAALDVLANVYR-DELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQ-GMIPYLPE 400 (852)
T ss_dssp ----------CCCCHHHHHHHHHHHHHHHHG-GGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHH-HHGGGHHH
T ss_pred ccccccccccccchHHHHHHHHHHHHHHhcc-HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchH-HHHHHHHH
Confidence 1111000 00111222222222222111 122333333333333332345677888899999988864 33357788
Q ss_pred HHHHHHhhCCCC
Q 008865 322 VAVLLKKYMPLR 333 (550)
Q Consensus 322 i~~~L~~~mP~~ 333 (550)
+...|...+-++
T Consensus 401 ~l~~l~~~l~d~ 412 (852)
T 4fdd_A 401 LIPHLIQCLSDK 412 (852)
T ss_dssp HHHHHHHHTTCS
T ss_pred HHHHHHHHcCCC
Confidence 888888888654
No 4
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=97.85 E-value=0.0013 Score=73.91 Aligned_cols=137 Identities=13% Similarity=0.145 Sum_probs=107.7
Q ss_pred cChhhHHHHHHHhc-CCHHHHHHHhhhhhHHhccCCCc---------chHHHHHhhhhhcccchhHHHHHhhcccccccc
Q 008865 29 QNVKDYEGIIEAAK-TSLKAKQLAAQLIPRFFKFFPDL---------SSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKD 98 (550)
Q Consensus 29 ~~~~~y~~Il~~~K-gs~k~K~LAaQfI~kffk~FP~L---------~e~Ai~a~lDLcEDed~~IR~qaik~Lp~lck~ 98 (550)
+-.+....++.... ++...+..|...+.+.++.+|+. -+..+..++.+..|.+..||..|++.|-.++..
T Consensus 125 ~wp~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~ 204 (852)
T 4fdd_A 125 NWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIIS 204 (852)
T ss_dssp TCTTHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTT
T ss_pred ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhc
Confidence 34455666777766 67889999999999999999976 345778888999999999999999999999876
Q ss_pred Ccc----hhhhHHHHHHHHHhhchhHHHHHHHHHHHHHHhhchH-------HHHHHHHHhhccCCCCCChHHHHHHHHHH
Q 008865 99 TPE----YLSKIVDILVQLLAAEEIVERDAVHKALMSLLRQDVK-------ASLTALFKHIGSVDEPSTDEFIREKVLSF 167 (550)
Q Consensus 99 ~~e----~~~riaDVL~QLLqsdd~~E~~~v~~aL~sllk~D~k-------~tLt~lf~qI~~~~e~~~eE~vREr~lkF 167 (550)
.++ ++..+...|.++++++++..+..+-.+|..+.+..|+ ..+..++..+. +.++.+|..++.|
T Consensus 205 ~~~~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l~~l~~~l~~~~~-----~~~~~vr~~a~e~ 279 (852)
T 4fdd_A 205 RTQALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQ-----DQDENVALEACEF 279 (852)
T ss_dssp TCHHHHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHT-----CSSHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHcc-----CCcHHHHHHHHHH
Confidence 653 3456777888888889999999999999999987664 33444444443 4567899999999
Q ss_pred Hhh
Q 008865 168 IRD 170 (550)
Q Consensus 168 l~~ 170 (550)
+..
T Consensus 280 l~~ 282 (852)
T 4fdd_A 280 WLT 282 (852)
T ss_dssp HHH
T ss_pred HHH
Confidence 875
No 5
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=97.81 E-value=0.00096 Score=73.31 Aligned_cols=133 Identities=8% Similarity=0.032 Sum_probs=103.1
Q ss_pred HHHHHHHhc-CCHHHHHHHhhhhhHHhccCCCcchHHHHHhhhhhcccchhHHHHHhhccccccccCcchhhhHHHHHHH
Q 008865 34 YEGIIEAAK-TSLKAKQLAAQLIPRFFKFFPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQ 112 (550)
Q Consensus 34 y~~Il~~~K-gs~k~K~LAaQfI~kffk~FP~L~e~Ai~a~lDLcEDed~~IR~qaik~Lp~lck~~~e~~~riaDVL~Q 112 (550)
|-.++.... .+-..|+|+--.+..|++.=|++.--++|++..-+.|.++.||-.|++.|..++ +++.+.-+...+.+
T Consensus 72 ~~~vik~~~s~~~~~Krl~Yl~~~~~~~~~~e~~~l~in~l~kDL~~~n~~vr~lAL~~L~~i~--~~~~~~~l~~~l~~ 149 (618)
T 1w63_A 72 QLECLKLIASQKFTDKRIGYLGAMLLLDERQDVHLLMTNCIKNDLNHSTQFVQGLALCTLGCMG--SSEMCRDLAGEVEK 149 (618)
T ss_dssp HHHHHHHHHSSSHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHSCSSSHHHHHHHHHHHHHC--CHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCchHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCCCHhHHHHHHHHHHhcC--CHHHHHHHHHHHHH
Confidence 334444343 567899999999999999999999999999998889999999999999999998 46888888999999
Q ss_pred HHhhchhHHHHHHHHHHHHHHhhchHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhh
Q 008865 113 LLAAEEIVERDAVHKALMSLLRQDVKASLTALFKHIGSVDEPSTDEFIREKVLSFIRD 170 (550)
Q Consensus 113 LLqsdd~~E~~~v~~aL~sllk~D~k~tLt~lf~qI~~~~e~~~eE~vREr~lkFl~~ 170 (550)
+|.+.++..+..+-.+|..+++.+|. .+..++..+..- -.+.+..|+.-++..|..
T Consensus 150 ~L~~~~~~VRk~A~~al~~l~~~~p~-~v~~~~~~l~~l-L~D~d~~V~~~Al~~L~~ 205 (618)
T 1w63_A 150 LLKTSNSYLRKKAALCAVHVIRKVPE-LMEMFLPATKNL-LNEKNHGVLHTSVVLLTE 205 (618)
T ss_dssp HHHSCCHHHHHHHHHHHHHHHHHCGG-GGGGGGGGTTTS-TTCCCHHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHChH-HHHHHHHHHHHH-hCCCCHhHHHHHHHHHHH
Confidence 99999999999999999999998885 233444333311 012334567666655543
No 6
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=97.75 E-value=0.0018 Score=71.48 Aligned_cols=284 Identities=11% Similarity=0.131 Sum_probs=161.7
Q ss_pred CCHHHHHHHhhhhhHHhccCCCcchHHHHHhhhhh--cccchhHHHHHhhccccccccCcchhh--hHHHHHHHHHhhch
Q 008865 43 TSLKAKQLAAQLIPRFFKFFPDLSSRAVDAHLDLI--EEEELGVRVQAIRGLPLFCKDTPEYLS--KIVDILVQLLAAEE 118 (550)
Q Consensus 43 gs~k~K~LAaQfI~kffk~FP~L~e~Ai~a~lDLc--EDed~~IR~qaik~Lp~lck~~~e~~~--riaDVL~QLLqsdd 118 (550)
+++-..-||-.++..+- =|++.+.-+..+..++ .|.++-||+.|+=.+..+++-+|+.++ ...+.|.++|.+.+
T Consensus 123 ~n~~ir~lALr~L~~i~--~~e~~~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~~~~~~~~~~l~~lL~d~d 200 (621)
T 2vgl_A 123 RNPTFMGLALHCIANVG--SREMAEAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDLVPMGDWTSRVVHLLNDQH 200 (621)
T ss_dssp CCHHHHHHHHHHHHHHC--CHHHHHHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGGCCCCSCHHHHHHHTTCSC
T ss_pred CCHHHHHHHHHHhhccC--CHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhhcCchhHHHHHHHHhCCCC
Confidence 44555566666666663 2666666677777777 899999999999999999999999998 89999999998888
Q ss_pred hHHHHHHHHHHHHHHhhchHH---H---HHHHHHhhccC-CCC-CC-------hHHHHHHHHHHHhhhcccchhhhcCCh
Q 008865 119 IVERDAVHKALMSLLRQDVKA---S---LTALFKHIGSV-DEP-ST-------DEFIREKVLSFIRDKVFPLKAELLKPQ 183 (550)
Q Consensus 119 ~~E~~~v~~aL~sllk~D~k~---t---Lt~lf~qI~~~-~e~-~~-------eE~vREr~lkFl~~kl~~l~~e~l~~~ 183 (550)
+..+..+-.+|.++...+|.. . +-.++.++... +-+ .+ ++-++-++|++|..-. +. ..
T Consensus 201 ~~V~~~a~~~l~~i~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~-~~------~d 273 (621)
T 2vgl_A 201 LGVVTAATSLITTLAQKNPEEFKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYP-PP------ED 273 (621)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHTTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSS-SC------SS
T ss_pred ccHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhC-CC------CC
Confidence 888888888888888777653 1 22233344321 111 11 4678888888877422 11 12
Q ss_pred HHHHHHHHHHHHhhhccc---c--------hHHHHHHHHHHhhccccCCCCchhHHHHHHHHHHHhhcccccCCCCChhh
Q 008865 184 EEMERHITDLIKKSLEDV---T--------GAEFRMFMDFLKSLSLFGEKAPTERMKELIGIIEGQADLDAQFNVSDADH 252 (550)
Q Consensus 184 eE~Ee~i~~~ikKvL~dV---t--------~~EF~l~m~lL~sL~~~~~~~~~gr~qeLv~~i~eqa~Ld~~f~~sD~d~ 252 (550)
.+..+.+.+.+..+++.. + ...-..+++..+.+-.+. ..+.-+ +..+..+. ..+..+|++.
T Consensus 274 ~~~~~~l~~~L~~il~~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~-~~~~~~-~~~~~~L~------~~L~~~~~ni 345 (621)
T 2vgl_A 274 PAVRGRLTECLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHD-SEPNLL-VRACNQLG------QFLQHRETNL 345 (621)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHC-CCHHHH-HHHHHHHH------HHSSCSCHHH
T ss_pred HHHHHHHHHHHHHHHHhhccCcccccccccchHHHHHHHHHHHHHhcC-CcHHHH-HHHHHHHH------HHhcCCCcch
Confidence 345555555555544321 1 001112222222221221 121111 22233222 2222334421
Q ss_pred HHHHHHHHHHhhhhhccCCCchhHHHHHHhhhcccCC-CCChhhhhhHHHHHHHhCCCCCchhhhhhhHHHHHHHHhhCC
Q 008865 253 IDRLISCLYMALPFFLRGASGSKFLNYLNKHIIPVFD-KLPEERKLDLLKALAEISPYTTPQDSRQILPSVAVLLKKYMP 331 (550)
Q Consensus 253 idRli~cl~~Alp~fs~~v~st~f~~y~~~~IlP~l~-~L~~~~kl~lLK~lAE~s~~~~~~~a~~~l~~i~~~L~~~mP 331 (550)
|++. +. ++-.+....++..++.-+...|+..+. +=+...|...|.+|..++. +. .+..|...|++|+.
T Consensus 346 --ry~a-L~-~l~~l~~~~~~~~~~~~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~---~~----Nv~~Iv~eL~~yl~ 414 (621)
T 2vgl_A 346 --RYLA-LE-SMCTLASSEFSHEAVKTHIETVINALKTERDVSVRQRAVDLLYAMCD---RS----NAQQIVAEMLSYLE 414 (621)
T ss_dssp --HHHH-HH-HHHHHTTCTTTHHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHCC---HH----HHHHHHHHHHHHHH
T ss_pred --HHHH-HH-HHHHHHhccCcHHHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHHcC---hh----hHHHHHHHHHHHHH
Confidence 2221 11 111111111223445444556666665 5555677777777777743 33 45667777788875
Q ss_pred CCCCCCCccchHHHHHHHHHHHHhhhcCch
Q 008865 332 LRKTGGEEMNFTYVECLLYTFHHLAHKAPN 361 (550)
Q Consensus 332 ~~~~~~~~l~fS~vEcLL~afh~L~~k~p~ 361 (550)
. .+..+.+-+.-+.+.+|.|+|.
T Consensus 415 ~-------~d~~~~~~~v~~I~~la~k~~~ 437 (621)
T 2vgl_A 415 T-------ADYSIREEIVLKVAILAEKYAV 437 (621)
T ss_dssp H-------CCHHHHHHHHHHHHHHHHHHCS
T ss_pred h-------cCHHHHHHHHHHHHHHHHhcCC
Confidence 3 3456777788888888887654
No 7
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=97.68 E-value=0.0027 Score=64.40 Aligned_cols=300 Identities=11% Similarity=0.042 Sum_probs=170.9
Q ss_pred hhHHHHHHHhc-C-CHHHHHHHhhhhhHHhccCCCcc-----hHHHHHhhhhhcccchhHHHHHhhccccccccCcchhh
Q 008865 32 KDYEGIIEAAK-T-SLKAKQLAAQLIPRFFKFFPDLS-----SRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLS 104 (550)
Q Consensus 32 ~~y~~Il~~~K-g-s~k~K~LAaQfI~kffk~FP~L~-----e~Ai~a~lDLcEDed~~IR~qaik~Lp~lck~~~e~~~ 104 (550)
.....++...+ + ++..+.-|+..+......-|+.. ..++..++.++.++++.||.+|+..|..+|.+++++..
T Consensus 64 ~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~ 143 (450)
T 2jdq_A 64 GVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRD 143 (450)
T ss_dssp THHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred CcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHH
Confidence 34566666666 5 68999999999999887655433 45899999999999999999999999999998876543
Q ss_pred -----hHHHHHHHHHhh-chhHHHHHHHHHHHHHHhhc-h-------HHHHHHHHHhhccCCCCCChHHHHHHHHHHHhh
Q 008865 105 -----KIVDILVQLLAA-EEIVERDAVHKALMSLLRQD-V-------KASLTALFKHIGSVDEPSTDEFIREKVLSFIRD 170 (550)
Q Consensus 105 -----riaDVL~QLLqs-dd~~E~~~v~~aL~sllk~D-~-------k~tLt~lf~qI~~~~e~~~eE~vREr~lkFl~~ 170 (550)
.+...|+++|.+ .+...+..+-.+|..+...+ | .+.+..|+..+. ++++.+|+.+...|..
T Consensus 144 ~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~-----~~~~~v~~~a~~~L~~ 218 (450)
T 2jdq_A 144 YVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLF-----VSDTDVLADACWALSY 218 (450)
T ss_dssp HHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGGTGGGHHHHHHHTT-----CCCHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHc-----cCCHHHHHHHHHHHHH
Confidence 367889999996 56778888888888888654 3 467777777775 5567788776655543
Q ss_pred hcccchhhhcCChHHHHHHHHHHHHhhhcccchHHHHHHHHHHhhccccCCCCchhHHHH-----HHHHHHHhhcccccC
Q 008865 171 KVFPLKAELLKPQEEMERHITDLIKKSLEDVTGAEFRMFMDFLKSLSLFGEKAPTERMKE-----LIGIIEGQADLDAQF 245 (550)
Q Consensus 171 kl~~l~~e~l~~~eE~Ee~i~~~ikKvL~dVt~~EF~l~m~lL~sL~~~~~~~~~gr~qe-----Lv~~i~eqa~Ld~~f 245 (550)
=....+ +.. ..-.+.-++..+-+.|.+-..+--......|..+-.. .+ ...+. ++..+... +
T Consensus 219 l~~~~~-~~~--~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~---~~-~~~~~~~~~~~l~~L~~l------l 285 (450)
T 2jdq_A 219 LSDGPN-DKI--QAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTG---DD-IQTQVILNCSALQSLLHL------L 285 (450)
T ss_dssp HTSSSH-HHH--HHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTS---CH-HHHHHHHTTTHHHHHHHH------T
T ss_pred HHCCCc-HHH--HHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhC---Ch-HHHHHHHHCccHHHHHHH------H
Confidence 111100 100 0011122334444455433221112223333333221 11 11121 22222221 2
Q ss_pred CCCChhhHHHHHHHHHHhhhhhccCCCchhHHHH-HHhhhcccCCCC----ChhhhhhHHHHHHHhCCCCCchhhhhhhH
Q 008865 246 NVSDADHIDRLISCLYMALPFFLRGASGSKFLNY-LNKHIIPVFDKL----PEERKLDLLKALAEISPYTTPQDSRQILP 320 (550)
Q Consensus 246 ~~sD~d~idRli~cl~~Alp~fs~~v~st~f~~y-~~~~IlP~l~~L----~~~~kl~lLK~lAE~s~~~~~~~a~~~l~ 320 (550)
...++......+.+ +--++.+. ...... +...++|.|-.+ +.+.|...+.+|..++...++.....++.
T Consensus 286 ~~~~~~vr~~a~~~----L~~l~~~~--~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~l~~ 359 (450)
T 2jdq_A 286 SSPKESIKKEACWT----ISNITAGN--RAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVE 359 (450)
T ss_dssp TCSSHHHHHHHHHH----HHHHTTSC--HHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred cCCCHHHHHHHHHH----HHHHHcCC--HHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 22233333333332 33333322 222222 223566644332 33566666677777765444444444443
Q ss_pred H-HHHHHHhhCCCCCCCCCccchHHHHHHHHHHHHhhhcCchh
Q 008865 321 S-VAVLLKKYMPLRKTGGEEMNFTYVECLLYTFHHLAHKAPNA 362 (550)
Q Consensus 321 ~-i~~~L~~~mP~~~~~~~~l~fS~vEcLL~afh~L~~k~p~~ 362 (550)
. +...|...+..+ +....+..+.++.+|+...+.+
T Consensus 360 ~~~i~~L~~ll~~~-------~~~v~~~a~~aL~~l~~~~~~~ 395 (450)
T 2jdq_A 360 LGCIKPLCDLLTVM-------DSKIVQVALNGLENILRLGEQE 395 (450)
T ss_dssp HTCHHHHHHGGGSS-------CHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHhcCC-------CHHHHHHHHHHHHHHHHhchhh
Confidence 2 555666666432 3456788888888888766653
No 8
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=97.68 E-value=0.004 Score=68.83 Aligned_cols=128 Identities=12% Similarity=0.169 Sum_probs=92.1
Q ss_pred HHHHhc-CCHHHHHHHhhhhhHHhcc-CC-CcchHHHHHhhhhhccc--chhHHHHHhhccccccccC-----cchhhhH
Q 008865 37 IIEAAK-TSLKAKQLAAQLIPRFFKF-FP-DLSSRAVDAHLDLIEEE--ELGVRVQAIRGLPLFCKDT-----PEYLSKI 106 (550)
Q Consensus 37 Il~~~K-gs~k~K~LAaQfI~kffk~-FP-~L~e~Ai~a~lDLcEDe--d~~IR~qaik~Lp~lck~~-----~e~~~ri 106 (550)
++.+.. .++.. .-+++.|...++. || +--.+.+..++.++.++ +..+|..|++.|..+|..- ..|++.+
T Consensus 95 ll~~l~~~~~~~-~~~~~~l~~i~~~~~~~~~w~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~l 173 (876)
T 1qgr_A 95 VLHTLGTETYRP-SSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEI 173 (876)
T ss_dssp HHHHTTTCCSSS-CHHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHHHHGGGHHHH
T ss_pred HHHHhCCCcHHH-HHHHHHHHHHHHhhCcccccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCHhhHHhHHHHH
Confidence 555554 45566 7788888877664 34 44566788999999999 9999999999999999863 3567788
Q ss_pred HHHHHHHHhhc--hhHHHHHHHHHHHHHHhhch---------HHHHHHHHHhhccCCCCCChHHHHHHHHHHHhh
Q 008865 107 VDILVQLLAAE--EIVERDAVHKALMSLLRQDV---------KASLTALFKHIGSVDEPSTDEFIREKVLSFIRD 170 (550)
Q Consensus 107 aDVL~QLLqsd--d~~E~~~v~~aL~sllk~D~---------k~tLt~lf~qI~~~~e~~~eE~vREr~lkFl~~ 170 (550)
...|.++|..+ ++..+..+=++|..++..-. ...+..++..+. .+++.+|..++++|..
T Consensus 174 l~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~-----~~~~~vr~~a~~~l~~ 243 (876)
T 1qgr_A 174 LTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQ-----CPDTRVRVAALQNLVK 243 (876)
T ss_dssp HHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTT-----CSSHHHHHHHHHHHHH
T ss_pred HHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcC-----CCCHHHHHHHHHHHHH
Confidence 88899999887 46677888888887764311 123555555443 4567789888887765
No 9
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=97.67 E-value=0.0061 Score=61.74 Aligned_cols=128 Identities=13% Similarity=0.177 Sum_probs=89.3
Q ss_pred HHHHhc-CCHHHHHHHhhhhhHHhcc-CCC-cchHHHHHhhhhhccc--chhHHHHHhhccccccccC-----cchhhhH
Q 008865 37 IIEAAK-TSLKAKQLAAQLIPRFFKF-FPD-LSSRAVDAHLDLIEEE--ELGVRVQAIRGLPLFCKDT-----PEYLSKI 106 (550)
Q Consensus 37 Il~~~K-gs~k~K~LAaQfI~kffk~-FP~-L~e~Ai~a~lDLcEDe--d~~IR~qaik~Lp~lck~~-----~e~~~ri 106 (550)
++.+.. .++.. .-+++.|...+++ ||+ .-.+.+..++..+.++ |..+|..|+..|-.+|++. ..|+..+
T Consensus 95 ll~~l~~~~~~v-~~~~~~i~~ia~~~~~~~~w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~l 173 (462)
T 1ibr_B 95 VLQTLGTETYRP-SSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEI 173 (462)
T ss_dssp HHHHTTCCCSSS-CSHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGHHHH
T ss_pred HHHHhCCCCchh-hHHHHHHHHHHHHhccccccHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHHHHH
Confidence 445444 45556 6688888888776 674 5567899999999998 9999999999999999865 3456778
Q ss_pred HHHHHHHHhhc--hhHHHHHHHHHHHHHHhh-----chH---H-HHHHHHHhhccCCCCCChHHHHHHHHHHHhh
Q 008865 107 VDILVQLLAAE--EIVERDAVHKALMSLLRQ-----DVK---A-SLTALFKHIGSVDEPSTDEFIREKVLSFIRD 170 (550)
Q Consensus 107 aDVL~QLLqsd--d~~E~~~v~~aL~sllk~-----D~k---~-tLt~lf~qI~~~~e~~~eE~vREr~lkFl~~ 170 (550)
...|.++|+.+ ++..+..+-++|.+++.. +.. . .+..++..+. ++++.+|..++..|..
T Consensus 174 l~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-----~~~~~vr~~~~~~l~~ 243 (462)
T 1ibr_B 174 LTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQ-----CPDTRVRVAALQNLVK 243 (462)
T ss_dssp HHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTT-----CSSHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcC-----CCCHHHHHHHHHHHHH
Confidence 88889999887 567777777788775432 111 1 2333333332 4567788877766554
No 10
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=97.66 E-value=0.026 Score=62.21 Aligned_cols=283 Identities=13% Similarity=0.104 Sum_probs=156.3
Q ss_pred HHHHHhc-CCHHHHHHHhhhhhHHhcc-CCC-cchHHHHHhhhhhccc-chhHHHHHhhccccccccC-------cchhh
Q 008865 36 GIIEAAK-TSLKAKQLAAQLIPRFFKF-FPD-LSSRAVDAHLDLIEEE-ELGVRVQAIRGLPLFCKDT-------PEYLS 104 (550)
Q Consensus 36 ~Il~~~K-gs~k~K~LAaQfI~kffk~-FP~-L~e~Ai~a~lDLcEDe-d~~IR~qaik~Lp~lck~~-------~e~~~ 104 (550)
.++.+.. .++..+.-+++.|...+++ ||. --.+.+..+++++.++ |+.+|..|++-|-.+|++- ..++.
T Consensus 99 ~ll~~l~~~~~~vr~~~~~~l~~i~~~~~p~~~w~~ll~~L~~~l~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~ 178 (861)
T 2bpt_A 99 NALTALVSIEPRIANAAAQLIAAIADIELPHGAWPELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALVSSSN 178 (861)
T ss_dssp HHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGTCCHHHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSSTTGGGHH
T ss_pred HHHHHHCCCchHHHHHHHHHHHHHHHhhCcccccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCChhhhHHHHHHH
Confidence 4555555 6788888999999998886 784 5578999999999999 9999999999999999853 24677
Q ss_pred hHHHHHHHHHhhc--hhHHHHHHHHHHHHHHhh---ch------HHHHHHHHHhhccCCCCCChHHHHHHHHHHHhhhcc
Q 008865 105 KIVDILVQLLAAE--EIVERDAVHKALMSLLRQ---DV------KASLTALFKHIGSVDEPSTDEFIREKVLSFIRDKVF 173 (550)
Q Consensus 105 riaDVL~QLLqsd--d~~E~~~v~~aL~sllk~---D~------k~tLt~lf~qI~~~~e~~~eE~vREr~lkFl~~kl~ 173 (550)
.+...|.+.|.++ ++..+..+-++|..++.. +. ...+..++..+. +++..+|+.++.-|..=+.
T Consensus 179 ~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~-----~~~~~~r~~a~~~l~~l~~ 253 (861)
T 2bpt_A 179 NILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQ-----AEDIEVQAAAFGCLCKIMS 253 (861)
T ss_dssp HHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHT-----CSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHccChhHHHHHHHHHHHHhc-----CCCHHHHHHHHHHHHHHHH
Confidence 7888888888887 667778888888776432 11 124555554443 5567788877776654222
Q ss_pred cchhhhcCChHHHHHHHHHHHHhhhcccchHHHHHHHHHHhhcccc-----------------CCCCchhHHHHHHHHHH
Q 008865 174 PLKAELLKPQEEMERHITDLIKKSLEDVTGAEFRMFMDFLKSLSLF-----------------GEKAPTERMKELIGIIE 236 (550)
Q Consensus 174 ~l~~e~l~~~eE~Ee~i~~~ikKvL~dVt~~EF~l~m~lL~sL~~~-----------------~~~~~~gr~qeLv~~i~ 236 (550)
..+ ..+ ..-+...|+..+...+.|....=....++++..+-.. .......-...++..+.
T Consensus 254 ~~~-~~~--~~~l~~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ll 330 (861)
T 2bpt_A 254 KYY-TFM--KPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLL 330 (861)
T ss_dssp HHG-GGC--HHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHHHHHHHHHH
T ss_pred HHH-HHH--HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhhHHHHHHHHHHHHHHHH
Confidence 222 222 1222223445555555554321112223333222110 00000011133444443
Q ss_pred HhhcccccCC-CCChh-hHH-HHHHHHHHhhhhhccCCCchhHHHHHHhhhcccCCCCChhhhhhHHHHHHHhCCCCCch
Q 008865 237 GQADLDAQFN-VSDAD-HID-RLISCLYMALPFFLRGASGSKFLNYLNKHIIPVFDKLPEERKLDLLKALAEISPYTTPQ 313 (550)
Q Consensus 237 eqa~Ld~~f~-~sD~d-~id-Rli~cl~~Alp~fs~~v~st~f~~y~~~~IlP~l~~L~~~~kl~lLK~lAE~s~~~~~~ 313 (550)
.. |...-. ..|.+ .+. ....|+......+. ...+..+...+...+++-....|--.+..|..++..|++.
T Consensus 331 ~~--l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~-----~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~ 403 (861)
T 2bpt_A 331 NL--LTRQNEDPEDDDWNVSMSAGACLQLFAQNCG-----NHILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKV 403 (861)
T ss_dssp HH--TTCCCCC-CCCCCHHHHHHHHHHHHHHHHHG-----GGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHH
T ss_pred HH--HHhcccccccccCcHHHHHHHHHHHHHHHcc-----HhHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHH
Confidence 32 211100 00111 121 12223322222221 1223333333333344322345666788888898888755
Q ss_pred hhhhhhHHHHHHHHhhCCCC
Q 008865 314 DSRQILPSVAVLLKKYMPLR 333 (550)
Q Consensus 314 ~a~~~l~~i~~~L~~~mP~~ 333 (550)
.....++.+...|...+.++
T Consensus 404 ~~~~~l~~il~~l~~~l~d~ 423 (861)
T 2bpt_A 404 QRTYYVHQALPSILNLMNDQ 423 (861)
T ss_dssp HHHHHHHHHHHHHHHGGGCS
T ss_pred HHHHHHHHHHHHHHHHcCCC
Confidence 55667788888888887553
No 11
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=97.64 E-value=0.0015 Score=68.48 Aligned_cols=131 Identities=17% Similarity=0.160 Sum_probs=95.3
Q ss_pred HHHHHHHhc-CCHHHHHHHhhhhhHHhccCCCc--chHHHHHhhhhhcccchhHHHHHhhcccccccc--CcchhhhHHH
Q 008865 34 YEGIIEAAK-TSLKAKQLAAQLIPRFFKFFPDL--SSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKD--TPEYLSKIVD 108 (550)
Q Consensus 34 y~~Il~~~K-gs~k~K~LAaQfI~kffk~FP~L--~e~Ai~a~lDLcEDed~~IR~qaik~Lp~lck~--~~e~~~riaD 108 (550)
...++...+ ++.....-|++-+......++.- .++.+..+.+.+ |++..||..+.+.|..++.. .++|...+..
T Consensus 12 i~~l~~~l~s~~~~~R~~A~~~l~~i~~~~~~~~~~~~l~~~L~~~~-d~~~~vr~~~~~~L~~~~~~~~~~~~~~~ll~ 90 (588)
T 1b3u_A 12 IAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTI-YDEDEVLLALAEQLGTFTTLVGGPEYVHCLLP 90 (588)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHTHHHHHHHSCHHHHHHTHHHHHHHTC-CCCHHHHHHHHHHHTTCSGGGTSGGGGGGGHH
T ss_pred HHHHHHHhhcccHHHHHHHHHhHHHHHHHhCHHHHHHHHHHHHHHhc-CCcHHHHHHHHHHHHHHHhccCcHHHHHHHHH
Confidence 456667666 77788888888888877766432 234556666666 67789999999999999864 5678889999
Q ss_pred HHHHHHhhchhHHHHHHHHHHHHHHhhchHHH----HHHHHHhhccCCCCCChHHHHHHHHHHHh
Q 008865 109 ILVQLLAAEEIVERDAVHKALMSLLRQDVKAS----LTALFKHIGSVDEPSTDEFIREKVLSFIR 169 (550)
Q Consensus 109 VL~QLLqsdd~~E~~~v~~aL~sllk~D~k~t----Lt~lf~qI~~~~e~~~eE~vREr~lkFl~ 169 (550)
+|.+++.++++..+..+-.+|..+....+... +-.++..+.. +++..+|+-++..+.
T Consensus 91 ~L~~l~~~~~~~vR~~a~~~L~~l~~~~~~~~~~~~l~~~l~~l~~----~~~~~~R~~a~~~l~ 151 (588)
T 1b3u_A 91 PLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAG----GDWFTSRTSACGLFS 151 (588)
T ss_dssp HHHHHTTSSCHHHHHHHHHHHHHHHTTSCHHHHHHTHHHHHHHHHT----CSSHHHHHHHGGGHH
T ss_pred HHHHHHhCchHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhc----CCCcHHHHHHHHHHH
Confidence 99999999999999999999999998766543 3334444432 334566776665444
No 12
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=97.61 E-value=0.0046 Score=68.14 Aligned_cols=296 Identities=6% Similarity=0.025 Sum_probs=157.6
Q ss_pred CHHHHHHHhhhhhHHhccCCCc------chHHHHHhhhhhcccchhHHHHHhhccccccccCcch----hh-hHHHHHHH
Q 008865 44 SLKAKQLAAQLIPRFFKFFPDL------SSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEY----LS-KIVDILVQ 112 (550)
Q Consensus 44 s~k~K~LAaQfI~kffk~FP~L------~e~Ai~a~lDLcEDed~~IR~qaik~Lp~lck~~~e~----~~-riaDVL~Q 112 (550)
++.++..|.+-+..+...|.+- .+..+..+..++.+++..+|..|++.|-.++...+++ +. .+..++..
T Consensus 194 ~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~~~~ 273 (861)
T 2bpt_A 194 SKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIA 273 (861)
T ss_dssp CHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHGGGCHHHHHHTHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHccChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6888989998888865544421 1346788888999999999999999999999877765 44 56666677
Q ss_pred HHhhchhHHHHHHHHHHHHHHhhch------------------------HHHHHHHHHhhccCCCCCChH--HHHHHHHH
Q 008865 113 LLAAEEIVERDAVHKALMSLLRQDV------------------------KASLTALFKHIGSVDEPSTDE--FIREKVLS 166 (550)
Q Consensus 113 LLqsdd~~E~~~v~~aL~sllk~D~------------------------k~tLt~lf~qI~~~~e~~~eE--~vREr~lk 166 (550)
.+.++++..+..+-..|.++...-+ ...+..++..+...++..+|+ .+|..+..
T Consensus 274 ~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~d~~d~~~~~r~~a~~ 353 (861)
T 2bpt_A 274 TMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGA 353 (861)
T ss_dssp HTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHHHHHHHHHHHHTTCCCCC-CCCCCHHHHHHHH
T ss_pred HHcCCcHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHhcccccccccCcHHHHHHH
Confidence 7777777667666666666655421 234455555555332221122 57776666
Q ss_pred HHhhhcccchhhhcCChHHHHHHHHHHHHhhhcccchHHHHHHHHHHhhccccCCCCchhH----HHHHHHHHHHhhccc
Q 008865 167 FIRDKVFPLKAELLKPQEEMERHITDLIKKSLEDVTGAEFRMFMDFLKSLSLFGEKAPTER----MKELIGIIEGQADLD 242 (550)
Q Consensus 167 Fl~~kl~~l~~e~l~~~eE~Ee~i~~~ikKvL~dVt~~EF~l~m~lL~sL~~~~~~~~~gr----~qeLv~~i~eqa~Ld 242 (550)
.|..=...++ +++-..++..+...|++-....-..-+..+.++-.. ..+.. +.+++..+... |.
T Consensus 354 ~L~~l~~~~~-------~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~---~~~~~~~~~l~~il~~l~~~--l~ 421 (861)
T 2bpt_A 354 CLQLFAQNCG-------NHILEPVLEFVEQNITADNWRNREAAVMAFGSIMDG---PDKVQRTYYVHQALPSILNL--MN 421 (861)
T ss_dssp HHHHHHHHHG-------GGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSS---SCHHHHHHHHHHHHHHHHHG--GG
T ss_pred HHHHHHHHcc-------HhHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHHHHH--cC
Confidence 5543211222 223345566666666554433333333344443211 11111 12233333322 21
Q ss_pred ccCCCCChhhHHHHHHHHHHhhhhhccCCCchhHHHHHHhhhcccCCCCChhhhhhHHHHHHHhCCCCC---chhhhhhh
Q 008865 243 AQFNVSDADHIDRLISCLYMALPFFLRGASGSKFLNYLNKHIIPVFDKLPEERKLDLLKALAEISPYTT---PQDSRQIL 319 (550)
Q Consensus 243 ~~f~~sD~d~idRli~cl~~Alp~fs~~v~st~f~~y~~~~IlP~l~~L~~~~kl~lLK~lAE~s~~~~---~~~a~~~l 319 (550)
..++..-...+.++.+...++.......+++.-+...++..+++= ...+......|..++..|+ .......+
T Consensus 422 ----d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~ 496 (861)
T 2bpt_A 422 ----DQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFY 496 (861)
T ss_dssp ----CSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGH
T ss_pred ----CCcHHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHHH
Confidence 122322234444454444444433223444444444444444432 3445545555555544443 24455677
Q ss_pred HHHHHHHHhhCCCCCCCCCccchHHHHHHHHHHHHhhhcCch
Q 008865 320 PSVAVLLKKYMPLRKTGGEEMNFTYVECLLYTFHHLAHKAPN 361 (550)
Q Consensus 320 ~~i~~~L~~~mP~~~~~~~~l~fS~vEcLL~afh~L~~k~p~ 361 (550)
+.|+..|...+-.+.. ++ ..-++.+-++..++...+.
T Consensus 497 ~~il~~L~~~l~~~d~-~~----~vr~~a~~al~~l~~~~~~ 533 (861)
T 2bpt_A 497 PALVDGLIGAANRIDN-EF----NARASAFSALTTMVEYATD 533 (861)
T ss_dssp HHHHHHHHHHHTCSCC-GG----GHHHHHHHHHHHHHHHCCG
T ss_pred HHHHHHHHHHHhCcCc-ch----HHHHHHHHHHHHHHHHcch
Confidence 8888888887754221 12 3334444455555544443
No 13
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=97.57 E-value=0.0071 Score=56.12 Aligned_cols=131 Identities=18% Similarity=0.222 Sum_probs=103.4
Q ss_pred HHHHHHhc-CCHHHHHHHhhhhhHHhccCCCcch-----HHHHHhhhhhcccchhHHHHHhhccccccccCcchhhh---
Q 008865 35 EGIIEAAK-TSLKAKQLAAQLIPRFFKFFPDLSS-----RAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSK--- 105 (550)
Q Consensus 35 ~~Il~~~K-gs~k~K~LAaQfI~kffk~FP~L~e-----~Ai~a~lDLcEDed~~IR~qaik~Lp~lck~~~e~~~r--- 105 (550)
..++...+ +++..+.-|+..|..+....|+... .++..++.+..+++..||.+|+..|-.+|.+++++...
T Consensus 5 ~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~ 84 (252)
T 4hxt_A 5 EKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVD 84 (252)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 34555555 6678888888888888887774433 47899999999999999999999999999988776543
Q ss_pred --HHHHHHHHHhhchhHHHHHHHHHHHHHHhhchH--------HHHHHHHHhhccCCCCCChHHHHHHHHHHHhh
Q 008865 106 --IVDILVQLLAAEEIVERDAVHKALMSLLRQDVK--------ASLTALFKHIGSVDEPSTDEFIREKVLSFIRD 170 (550)
Q Consensus 106 --iaDVL~QLLqsdd~~E~~~v~~aL~sllk~D~k--------~tLt~lf~qI~~~~e~~~eE~vREr~lkFl~~ 170 (550)
+.+.|+++|.++++..+..+-.+|..+...++. +.+..|+..+. ++++.+|+.++..|..
T Consensus 85 ~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~-----~~~~~~~~~a~~~L~~ 154 (252)
T 4hxt_A 85 AGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLT-----STDSEVQKEAARALAN 154 (252)
T ss_dssp TTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTT-----CSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHc-----CCCHHHHHHHHHHHHH
Confidence 688999999999988888888898888865544 46777777765 5567788888877664
No 14
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=97.57 E-value=0.0029 Score=66.29 Aligned_cols=155 Identities=12% Similarity=0.089 Sum_probs=95.7
Q ss_pred HHHHHhc-CCHHHHHHHhhhhhHHhccCCCc------chHHHHHhhhhhcccchhHHHHHhhccccccccCc--chhhhH
Q 008865 36 GIIEAAK-TSLKAKQLAAQLIPRFFKFFPDL------SSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTP--EYLSKI 106 (550)
Q Consensus 36 ~Il~~~K-gs~k~K~LAaQfI~kffk~FP~L------~e~Ai~a~lDLcEDed~~IR~qaik~Lp~lck~~~--e~~~ri 106 (550)
.++...+ .++.+++-|++.+.++.+.++.- .+..+..+..++.|.+..||..|...|..+|..-. ...+.+
T Consensus 285 ~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l 364 (588)
T 1b3u_A 285 AFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHL 364 (588)
T ss_dssp HHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCHHHHHHHT
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhHhHHHHHH
Confidence 3444445 56778888888888888877642 45567777788888888888888888888875221 224567
Q ss_pred HHHHHHHHhhchhHHHHHHHHHHHHHHhhch-----HHHHHHHHHhhccCCCCCChHHHHHHHHHHHhhhcccchhhhcC
Q 008865 107 VDILVQLLAAEEIVERDAVHKALMSLLRQDV-----KASLTALFKHIGSVDEPSTDEFIREKVLSFIRDKVFPLKAELLK 181 (550)
Q Consensus 107 aDVL~QLLqsdd~~E~~~v~~aL~sllk~D~-----k~tLt~lf~qI~~~~e~~~eE~vREr~lkFl~~kl~~l~~e~l~ 181 (550)
..+|.++|.++++..+..+-.+|..+...-. ...+..|...+. +.+..+|..++..|..=...++.+.+
T Consensus 365 ~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~lp~l~~~~~-----d~~~~vr~~~~~~l~~l~~~~~~~~~- 438 (588)
T 1b3u_A 365 LPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAE-----DAKWRVRLAIIEYMPLLAGQLGVEFF- 438 (588)
T ss_dssp HHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCHHHHHHHHHHHHHHHHT-----CSSHHHHHHHHHHHHHHHHHHCGGGC-
T ss_pred HHHHHHHhCCCchHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhc-----CCCchHHHHHHHHHHHHHHHcCHHHH-
Confidence 7788888887777777777777777766422 223334443332 33445777666655432222222222
Q ss_pred ChHHHHHHHHHHHHhhhccc
Q 008865 182 PQEEMERHITDLIKKSLEDV 201 (550)
Q Consensus 182 ~~eE~Ee~i~~~ikKvL~dV 201 (550)
...++..+.+.|.|-
T Consensus 439 -----~~~l~~~l~~~l~d~ 453 (588)
T 1b3u_A 439 -----DEKLNSLCMAWLVDH 453 (588)
T ss_dssp -----CHHHHHHHHHGGGCS
T ss_pred -----HHHHHHHHHHHhcCC
Confidence 134555666666554
No 15
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=97.57 E-value=0.0098 Score=60.31 Aligned_cols=296 Identities=11% Similarity=0.066 Sum_probs=167.7
Q ss_pred HHHHHHHhc-CCHHHHHHHhhhhhHHhc--cCCCcch-----HHHHHhhhhhccc-chhHHHHHhhccccccccCcchhh
Q 008865 34 YEGIIEAAK-TSLKAKQLAAQLIPRFFK--FFPDLSS-----RAVDAHLDLIEEE-ELGVRVQAIRGLPLFCKDTPEYLS 104 (550)
Q Consensus 34 y~~Il~~~K-gs~k~K~LAaQfI~kffk--~FP~L~e-----~Ai~a~lDLcEDe-d~~IR~qaik~Lp~lck~~~e~~~ 104 (550)
...++...+ +++..+..|++.+.+... .-|..+. .++..++.++.++ ++.||..|...|-.+|..++++..
T Consensus 22 l~~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~ 101 (450)
T 2jdq_A 22 TSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTR 101 (450)
T ss_dssp CHHHHHHHHSSCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence 455666555 778899999999999865 3344332 6789999999988 899999999999999998777653
Q ss_pred -----hHHHHHHHHHhhchhHHHHHHHHHHHHHHhhchH--------HHHHHHHHhhccCCCCCChHHHHHHHHHHHhhh
Q 008865 105 -----KIVDILVQLLAAEEIVERDAVHKALMSLLRQDVK--------ASLTALFKHIGSVDEPSTDEFIREKVLSFIRDK 171 (550)
Q Consensus 105 -----riaDVL~QLLqsdd~~E~~~v~~aL~sllk~D~k--------~tLt~lf~qI~~~~e~~~eE~vREr~lkFl~~k 171 (550)
.+...|+++|.++++..+..+-.+|..+...++. +.+..|...+.. +.+..+|+.++..|..=
T Consensus 102 ~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~----~~~~~v~~~a~~~L~~l 177 (450)
T 2jdq_A 102 IVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSK----QNRLTMTRNAVWALSNL 177 (450)
T ss_dssp HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTS----CCCHHHHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcC----CCCHHHHHHHHHHHHHH
Confidence 3778999999999998889898999888876542 445566665541 24567888887766642
Q ss_pred cccchhhhcCChHHHHHHHHHHHHhhhcccchHHHHHHHHHHhhccccCCCCchhHHHH-----HHHHHHHhhcccccCC
Q 008865 172 VFPLKAELLKPQEEMERHITDLIKKSLEDVTGAEFRMFMDFLKSLSLFGEKAPTERMKE-----LIGIIEGQADLDAQFN 246 (550)
Q Consensus 172 l~~l~~e~l~~~eE~Ee~i~~~ikKvL~dVt~~EF~l~m~lL~sL~~~~~~~~~gr~qe-----Lv~~i~eqa~Ld~~f~ 246 (550)
.....+.. ......-++..+.+.|.+-..+-.......|..+-.. .+ ...+. ++..+... +.
T Consensus 178 ~~~~~~~~---~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~---~~-~~~~~~~~~~~i~~L~~l------l~ 244 (450)
T 2jdq_A 178 CRGKSPPP---EFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDG---PN-DKIQAVIDAGVCRRLVEL------LM 244 (450)
T ss_dssp HCCSSSCC---CGGGTGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSS---SH-HHHHHHHHTTTHHHHHHH------TT
T ss_pred hCCCCCCC---CHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCC---Cc-HHHHHHHHcCcHHHHHHH------HC
Confidence 21110000 0011122334444555433222222233444444322 11 11111 12222211 12
Q ss_pred CCChhhHHHHHHHHHHhhhhhccCCCchhHHHHHH-hhhccc----CCCCChhhhhhHHHHHHHhCCCCCchh----hhh
Q 008865 247 VSDADHIDRLISCLYMALPFFLRGASGSKFLNYLN-KHIIPV----FDKLPEERKLDLLKALAEISPYTTPQD----SRQ 317 (550)
Q Consensus 247 ~sD~d~idRli~cl~~Alp~fs~~v~st~f~~y~~-~~IlP~----l~~L~~~~kl~lLK~lAE~s~~~~~~~----a~~ 317 (550)
..|++.....+. ++-.++.+.. .....+. ..++|. +..=....+...+.+|..++..+.... ...
T Consensus 245 ~~~~~v~~~a~~----~L~~l~~~~~--~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~ 318 (450)
T 2jdq_A 245 HNDYKVVSPALR----AVGNIVTGDD--IQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDAN 318 (450)
T ss_dssp CSCHHHHHHHHH----HHHHHTTSCH--HHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTT
T ss_pred CCchhHHHHHHH----HHHHHhhCCh--HHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCC
Confidence 233333333333 3333333322 1112111 234443 333234567788889988887543211 124
Q ss_pred hhHHHHHHHHhhCCCCCCCCCccchHHHHHHHHHHHHhhhc-Cchhh
Q 008865 318 ILPSVAVLLKKYMPLRKTGGEEMNFTYVECLLYTFHHLAHK-APNAT 363 (550)
Q Consensus 318 ~l~~i~~~L~~~mP~~~~~~~~l~fS~vEcLL~afh~L~~k-~p~~l 363 (550)
.++.+.+.|.. + +....+...+++.+|+.. .|+..
T Consensus 319 ~l~~L~~~l~~----~-------~~~v~~~a~~~L~~l~~~~~~~~~ 354 (450)
T 2jdq_A 319 IFPALISILQT----A-------EFRTRKEAAWAITNATSGGSAEQI 354 (450)
T ss_dssp HHHHHHHHHHH----S-------CHHHHHHHHHHHHHHHHHCCHHHH
T ss_pred CHHHHHHHHhc----C-------CHHHHHHHHHHHHHHHcCCCHHHH
Confidence 55666555552 1 235667788888888876 55543
No 16
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=97.54 E-value=0.01 Score=62.83 Aligned_cols=134 Identities=10% Similarity=0.141 Sum_probs=101.0
Q ss_pred hhhHHHHHHHhc-CCHHHHHHHhhhhhHHhccC--CCc----chHHHHHhhhhhccc-chhHHHHHhhccccccccCcch
Q 008865 31 VKDYEGIIEAAK-TSLKAKQLAAQLIPRFFKFF--PDL----SSRAVDAHLDLIEEE-ELGVRVQAIRGLPLFCKDTPEY 102 (550)
Q Consensus 31 ~~~y~~Il~~~K-gs~k~K~LAaQfI~kffk~F--P~L----~e~Ai~a~lDLcEDe-d~~IR~qaik~Lp~lck~~~e~ 102 (550)
......++...+ +++..+..|++.+.++.... |.. ...++..++.+..++ ++.||..|+..|-.+|.+++++
T Consensus 86 ~~~i~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~ 165 (530)
T 1wa5_B 86 QQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQ 165 (530)
T ss_dssp -CCHHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHH
Confidence 345777777777 77889999999999998764 322 245788999999997 8999999999999999988776
Q ss_pred hhh-----HHHHHHHHHhhchhHHHHHHHHHHHHHHhhchH--------HHHHHHHHhhccCCCCCChHHHHHHHHHHHh
Q 008865 103 LSK-----IVDILVQLLAAEEIVERDAVHKALMSLLRQDVK--------ASLTALFKHIGSVDEPSTDEFIREKVLSFIR 169 (550)
Q Consensus 103 ~~r-----iaDVL~QLLqsdd~~E~~~v~~aL~sllk~D~k--------~tLt~lf~qI~~~~e~~~eE~vREr~lkFl~ 169 (550)
... +...|+++|.+.++..+..+-.+|..+...++. +.+..|+..+. ..+..+|..++..|.
T Consensus 166 ~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~-----~~~~~v~~~a~~~L~ 240 (530)
T 1wa5_B 166 TKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFN-----SNKPSLIRTATWTLS 240 (530)
T ss_dssp HHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGG-----SCCHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhc-----cCCHHHHHHHHHHHH
Confidence 543 578999999999998888888888888765432 34555666554 244556666555444
No 17
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=97.54 E-value=0.0028 Score=58.04 Aligned_cols=136 Identities=16% Similarity=0.144 Sum_probs=103.2
Q ss_pred ChhhHHHHHHHhc-CCHHHHHHHhhhhhHHhccCCCcch-----HHHHHhhhhhcccchhHHHHHhhccccccccCcchh
Q 008865 30 NVKDYEGIIEAAK-TSLKAKQLAAQLIPRFFKFFPDLSS-----RAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYL 103 (550)
Q Consensus 30 ~~~~y~~Il~~~K-gs~k~K~LAaQfI~kffk~FP~L~e-----~Ai~a~lDLcEDed~~IR~qaik~Lp~lck~~~e~~ 103 (550)
....|..+....+ .++..+.-|+..|......-|+... .++..++.+..++++.||.+|+..|-.+|.+++++.
T Consensus 10 ~~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~ 89 (210)
T 4db6_A 10 HGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQI 89 (210)
T ss_dssp ---CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred ccchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHH
Confidence 3445666677666 7788888899988888877666543 478899999999999999999999999999887765
Q ss_pred hh-----HHHHHHHHHhhchhHHHHHHHHHHHHHHhhchH--------HHHHHHHHhhccCCCCCChHHHHHHHHHHHhh
Q 008865 104 SK-----IVDILVQLLAAEEIVERDAVHKALMSLLRQDVK--------ASLTALFKHIGSVDEPSTDEFIREKVLSFIRD 170 (550)
Q Consensus 104 ~r-----iaDVL~QLLqsdd~~E~~~v~~aL~sllk~D~k--------~tLt~lf~qI~~~~e~~~eE~vREr~lkFl~~ 170 (550)
.. +...|+++|.+.++..+..+-.+|..+...++. +.+..|..-+. +++..+|+.++..|..
T Consensus 90 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~-----~~~~~v~~~a~~aL~~ 164 (210)
T 4db6_A 90 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLS-----SPNEQILQEALWALSN 164 (210)
T ss_dssp HHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTT-----CSCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHc-----CCCHHHHHHHHHHHHH
Confidence 54 457999999999988888888888888765443 34566666665 4566788877776653
No 18
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=97.53 E-value=0.0093 Score=64.88 Aligned_cols=120 Identities=13% Similarity=0.132 Sum_probs=100.4
Q ss_pred CCHHHHHHHhhhhhHHhccCCCcchHHHHHhhhhhcccchhHHHHHhhccccccccCcchhh--hHHHHHHHHHhhchhH
Q 008865 43 TSLKAKQLAAQLIPRFFKFFPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLS--KIVDILVQLLAAEEIV 120 (550)
Q Consensus 43 gs~k~K~LAaQfI~kffk~FP~L~e~Ai~a~lDLcEDed~~IR~qaik~Lp~lck~~~e~~~--riaDVL~QLLqsdd~~ 120 (550)
.++-.+.+|-..+...- -|++.+.-+..+..+..|.++.||+.|+..|..+|+.+|+.+. .+.+.|.++|.+.++.
T Consensus 98 ~n~~ir~~AL~~L~~i~--~~~~~~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~~~~~~~~~~l~~lL~d~d~~ 175 (591)
T 2vgl_B 98 PNPLIRALAVRTMGCIR--VDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMVEDQGFLDSLRDLIADSNPM 175 (591)
T ss_dssp SSHHHHHHHHHHHHTCC--SGGGHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHTTSCSCHH
T ss_pred CCHHHHHHHHHHHHcCC--hHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhhChhhcccccHHHHHHHHhCCCChh
Confidence 67888889988888874 7888888899999999999999999999999999999999887 4889999999998988
Q ss_pred HHHHHHHHHHHHHhhch--------HHHHHHHHHhhccCCCCCChHHHHHHHHHHHh
Q 008865 121 ERDAVHKALMSLLRQDV--------KASLTALFKHIGSVDEPSTDEFIREKVLSFIR 169 (550)
Q Consensus 121 E~~~v~~aL~sllk~D~--------k~tLt~lf~qI~~~~e~~~eE~vREr~lkFl~ 169 (550)
.+..+=.+|..+...+| ...+..|+..+. ..++-++-+++..+.
T Consensus 176 V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l~-----~~~~~~q~~il~~l~ 227 (591)
T 2vgl_B 176 VVANAVAALSEISESHPNSNLLDLNPQNINKLLTALN-----ECTEWGQIFILDCLS 227 (591)
T ss_dssp HHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHHH-----HCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcCC-----CCCchHHHHHHHHHH
Confidence 88888888888877776 346788888876 345666777777664
No 19
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=97.52 E-value=0.0068 Score=61.43 Aligned_cols=288 Identities=12% Similarity=0.076 Sum_probs=156.8
Q ss_pred CCHHHHHHHhhhhhHHhcc------------CCCcchHH----HHHhhhhhcccchhHHHHHhhccccccccC-cc-hhh
Q 008865 43 TSLKAKQLAAQLIPRFFKF------------FPDLSSRA----VDAHLDLIEEEELGVRVQAIRGLPLFCKDT-PE-YLS 104 (550)
Q Consensus 43 gs~k~K~LAaQfI~kffk~------------FP~L~e~A----i~a~lDLcEDed~~IR~qaik~Lp~lck~~-~e-~~~ 104 (550)
.+..++++|+..+.++.+. |+.+.++. -+.++.++.+++..| .++...|..|++.. |+ ..+
T Consensus 49 ~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~~~~l~~~~~~~ik~~ll~~l~~~~~~v-~~~~~~i~~ia~~~~~~~~w~ 127 (462)
T 1ibr_B 49 NSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLQTLGTETYRP-SSASQCVAGIACAEIPVNQWP 127 (462)
T ss_dssp SCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTCCCSSS-CSHHHHHHHHHHHHGGGTCCT
T ss_pred CChHHHHHHHHHHHHhccccchHHHHHHHhhhhcCCHHHHHHHHHHHHHHhCCCCchh-hHHHHHHHHHHHHhccccccH
Confidence 3689999999999998754 24444433 345778888888888 88888888877753 42 457
Q ss_pred hHHHHHHHHHhhc--hhHHHHHHHHHHHHHHhhc-h-------HHHHHHHHHhhccCCCCCChHHHHHHHHHHHhhhccc
Q 008865 105 KIVDILVQLLAAE--EIVERDAVHKALMSLLRQD-V-------KASLTALFKHIGSVDEPSTDEFIREKVLSFIRDKVFP 174 (550)
Q Consensus 105 riaDVL~QLLqsd--d~~E~~~v~~aL~sllk~D-~-------k~tLt~lf~qI~~~~e~~~eE~vREr~lkFl~~kl~~ 174 (550)
.+...|.++++++ ++..+..+=.+|..+.+.- + ...+..+..-+. +.+ .+..+|..+++-+..=+.-
T Consensus 128 ~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~-~~~--~~~~vr~~a~~~l~~~~~~ 204 (462)
T 1ibr_B 128 ELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMR-KEE--PSNNVKLAATNALLNSLEF 204 (462)
T ss_dssp THHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHS-TTC--CCHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHHHHHHHHHHHHhC-CCC--CCHHHHHHHHHHHHHHHHH
Confidence 8999999999998 8888888888888777531 1 234444444443 211 1467898888766543222
Q ss_pred chhhhcCChHHHHHHHHHHHHhhhcccchHHHH----HHHHHHhhccc-cCCCCchhHHH-HHHHHHHHhhcccccCCCC
Q 008865 175 LKAELLKPQEEMERHITDLIKKSLEDVTGAEFR----MFMDFLKSLSL-FGEKAPTERMK-ELIGIIEGQADLDAQFNVS 248 (550)
Q Consensus 175 l~~e~l~~~eE~Ee~i~~~ikKvL~dVt~~EF~----l~m~lL~sL~~-~~~~~~~gr~q-eLv~~i~eqa~Ld~~f~~s 248 (550)
++...- ......+++..+...+.+...+-.. .|..+....+. +.. .+. .++.++..... ..
T Consensus 205 ~~~~~~--~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~-----~~~~~l~~~~~~~~~------~~ 271 (462)
T 1ibr_B 205 TKANFD--KESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMET-----YMGPALFAITIEAMK------SD 271 (462)
T ss_dssp THHHHT--SHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTT-----TTTTTHHHHHHHHHH------CS
T ss_pred HHHhhh--hhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHc------CC
Confidence 221111 1123455666666665554433222 23333332221 111 112 45555543211 12
Q ss_pred ChhhHHHHHHHHHHhhhh------hccC---------CCchhHHHHHHhhhccc----CCCCCh-------hhhhhHHHH
Q 008865 249 DADHIDRLISCLYMALPF------FLRG---------ASGSKFLNYLNKHIIPV----FDKLPE-------ERKLDLLKA 302 (550)
Q Consensus 249 D~d~idRli~cl~~Alp~------fs~~---------v~st~f~~y~~~~IlP~----l~~L~~-------~~kl~lLK~ 302 (550)
+++.....+.++...... +... .....++..+...++|. +.+.++ ..+......
T Consensus 272 ~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~ 351 (462)
T 1ibr_B 272 IDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVC 351 (462)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHH
Confidence 333222222222211111 1110 12223444344555553 332211 123334444
Q ss_pred HHHhCCCCCchhhhhhhHHHHHHHHhhCCCCCCCCCccchHHHHHHHHHHHHhhhc
Q 008865 303 LAEISPYTTPQDSRQILPSVAVLLKKYMPLRKTGGEEMNFTYVECLLYTFHHLAHK 358 (550)
Q Consensus 303 lAE~s~~~~~~~a~~~l~~i~~~L~~~mP~~~~~~~~l~fS~vEcLL~afh~L~~k 358 (550)
|..++..++ ..+++.+...+..++-+ -++..-++.++++..++..
T Consensus 352 L~~l~~~~~----~~~~~~~~~~l~~~l~~-------~~~~~r~aal~~l~~l~~~ 396 (462)
T 1ibr_B 352 LMLLATCCE----DDIVPHVLPFIKEHIKN-------PDWRYRDAAVMAFGCILEG 396 (462)
T ss_dssp HHHHHHHTT----TTHHHHHHHHHHHHTTC-------SSHHHHHHHHHHHHHTSSS
T ss_pred HHHHHHhcc----HHHHHHHHHHHHHHhcC-------CChHHHHHHHHHHHHHhcC
Confidence 444444444 25677788888877743 3688999999999999864
No 20
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=97.51 E-value=0.00096 Score=70.70 Aligned_cols=298 Identities=13% Similarity=0.081 Sum_probs=166.5
Q ss_pred hHHHHHHHhc-C-CHHHHHHHhhhhhHHhccCCCcc-----hHHHHHhhhhhcccchhHHHHHhhccccccccCcchhh-
Q 008865 33 DYEGIIEAAK-T-SLKAKQLAAQLIPRFFKFFPDLS-----SRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLS- 104 (550)
Q Consensus 33 ~y~~Il~~~K-g-s~k~K~LAaQfI~kffk~FP~L~-----e~Ai~a~lDLcEDed~~IR~qaik~Lp~lck~~~e~~~- 104 (550)
....++...+ + ++..+..|+..+.......|+.. ..++..++.+..+.++.||.+|+..|..+|.+++++..
T Consensus 131 ~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~ 210 (530)
T 1wa5_B 131 VVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDY 210 (530)
T ss_dssp CHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHH
Confidence 3455555555 3 67888888888888887666544 34678899999999999999999999999998776533
Q ss_pred ----hHHHHHHHHHhhchhHHHHHHHHHHHHHHhhc-h-------HHHHHHHHHhhccCCCCCChHHHHHHHHHHHhhhc
Q 008865 105 ----KIVDILVQLLAAEEIVERDAVHKALMSLLRQD-V-------KASLTALFKHIGSVDEPSTDEFIREKVLSFIRDKV 172 (550)
Q Consensus 105 ----riaDVL~QLLqsdd~~E~~~v~~aL~sllk~D-~-------k~tLt~lf~qI~~~~e~~~eE~vREr~lkFl~~kl 172 (550)
.+...|+++|.+.++..+..+-.+|..|...+ | .+.+..|+..+. ++++.+|..++..|..=.
T Consensus 211 ~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~-----~~d~~v~~~a~~~L~~L~ 285 (530)
T 1wa5_B 211 VLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIY-----SMDTETLVDACWAISYLS 285 (530)
T ss_dssp HHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTT-----CCCHHHHHHHHHHHHHHH
T ss_pred HHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHHc-----CCCHHHHHHHHHHHHHHh
Confidence 36788999999988888888888888888654 2 356677777665 456778877776554311
Q ss_pred ccchhhhcCChHHHHHHHHHHHHhhhcccchHHHHHHHHHHhhccccCCCCchhHHHHH-----HHHHHHhhcccccCCC
Q 008865 173 FPLKAELLKPQEEMERHITDLIKKSLEDVTGAEFRMFMDFLKSLSLFGEKAPTERMKEL-----IGIIEGQADLDAQFNV 247 (550)
Q Consensus 173 ~~l~~e~l~~~eE~Ee~i~~~ikKvL~dVt~~EF~l~m~lL~sL~~~~~~~~~gr~qeL-----v~~i~eqa~Ld~~f~~ 247 (550)
.. ..+.. ..-.+.-++..+...|.+-...--......|..+-.. .+... +.+ +..+.. -+..
T Consensus 286 ~~-~~~~~--~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~---~~~~~-~~~~~~~~l~~L~~------lL~~ 352 (530)
T 1wa5_B 286 DG-PQEAI--QAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTG---NDLQT-QVVINAGVLPALRL------LLSS 352 (530)
T ss_dssp SS-CHHHH--HHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTS---CHHHH-HHHHHTTHHHHHHH------HTTC
T ss_pred CC-CHHHH--HHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHcC---CHHHH-HHHHHcchHHHHHH------HHcC
Confidence 11 11111 0011112334444555543322122223344433221 11111 211 122221 1122
Q ss_pred CChhhHHHHHHHHHHhhhhhccCCCchhHHHHHH-hhhcccCCCC----ChhhhhhHHHHHHHhCCCCCc--hhhhhhhH
Q 008865 248 SDADHIDRLISCLYMALPFFLRGASGSKFLNYLN-KHIIPVFDKL----PEERKLDLLKALAEISPYTTP--QDSRQILP 320 (550)
Q Consensus 248 sD~d~idRli~cl~~Alp~fs~~v~st~f~~y~~-~~IlP~l~~L----~~~~kl~lLK~lAE~s~~~~~--~~a~~~l~ 320 (550)
.++..... +-.++.-++.+ +.....++. ..++|.|-.+ +.+.+...+.+|..++..+++ .....++.
T Consensus 353 ~~~~vr~~----A~~aL~~l~~~--~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~ 426 (530)
T 1wa5_B 353 PKENIKKE----ACWTISNITAG--NTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVS 426 (530)
T ss_dssp SCHHHHHH----HHHHHHHHTTS--CHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHH
T ss_pred CCHHHHHH----HHHHHHHHHcC--CHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence 23322222 22233334332 223333333 4566644333 335677777777777665444 33333322
Q ss_pred H-HHHHHHhhCCCCCCCCCccchHHHHHHHHHHHHhhhcCch
Q 008865 321 S-VAVLLKKYMPLRKTGGEEMNFTYVECLLYTFHHLAHKAPN 361 (550)
Q Consensus 321 ~-i~~~L~~~mP~~~~~~~~l~fS~vEcLL~afh~L~~k~p~ 361 (550)
. +...|...+-.+ +-...+..+.++.+|....+.
T Consensus 427 ~~~l~~L~~ll~~~-------~~~v~~~al~aL~~l~~~~~~ 461 (530)
T 1wa5_B 427 QGCIKPLCDLLEIA-------DNRIIEVTLDALENILKMGEA 461 (530)
T ss_dssp TTCHHHHHHHTTTC-------CHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhCC-------CHHHHHHHHHHHHHHHHhhhh
Confidence 1 444445555331 335677888888888776665
No 21
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=97.51 E-value=0.0063 Score=64.14 Aligned_cols=300 Identities=12% Similarity=0.114 Sum_probs=172.7
Q ss_pred ChhhHHHHHHHhc-CCHHHHHHHhhhhhHHhccCC-Cc-----chHHHHHhhhhhcccc-hhHHHHHhhccccccccCcc
Q 008865 30 NVKDYEGIIEAAK-TSLKAKQLAAQLIPRFFKFFP-DL-----SSRAVDAHLDLIEEEE-LGVRVQAIRGLPLFCKDTPE 101 (550)
Q Consensus 30 ~~~~y~~Il~~~K-gs~k~K~LAaQfI~kffk~FP-~L-----~e~Ai~a~lDLcEDed-~~IR~qaik~Lp~lck~~~e 101 (550)
..+....++...+ +++..+..|++.+.+.....+ .. ...++..++.+..+++ +.||.+|...|-.+|.++++
T Consensus 72 ~~~~l~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~ 151 (528)
T 4b8j_A 72 KLESLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSE 151 (528)
T ss_dssp ---CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHH
T ss_pred hHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHH
Confidence 3455777888776 778899999999999987665 22 2357888999999887 99999999999999999888
Q ss_pred hhhh-----HHHHHHHHHhhchhHHHHHHHHHHHHHHhhchH--------HHHHHHHHhhccCCCCCChHHHHHHHHHHH
Q 008865 102 YLSK-----IVDILVQLLAAEEIVERDAVHKALMSLLRQDVK--------ASLTALFKHIGSVDEPSTDEFIREKVLSFI 168 (550)
Q Consensus 102 ~~~r-----iaDVL~QLLqsdd~~E~~~v~~aL~sllk~D~k--------~tLt~lf~qI~~~~e~~~eE~vREr~lkFl 168 (550)
+... +...|+++|.++++..+..+-.+|..|...++. +.+..|+..+.. ..+..++..++..|
T Consensus 152 ~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~----~~~~~v~~~a~~~L 227 (528)
T 4b8j_A 152 NTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNE----HTKLSMLRNATWTL 227 (528)
T ss_dssp HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCT----TCCHHHHHHHHHHH
T ss_pred HHHHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhc----CCCHHHHHHHHHHH
Confidence 7554 677899999999888888888888888765443 356677777632 34566777666655
Q ss_pred hhhcccchhhhcCChHHHHHHHHHHHHhhhcccchHHHHHHHHHHhhccccCCCCchhHHHHHH-----HHHHHhhcccc
Q 008865 169 RDKVFPLKAELLKPQEEMERHITDLIKKSLEDVTGAEFRMFMDFLKSLSLFGEKAPTERMKELI-----GIIEGQADLDA 243 (550)
Q Consensus 169 ~~kl~~l~~e~l~~~eE~Ee~i~~~ikKvL~dVt~~EF~l~m~lL~sL~~~~~~~~~gr~qeLv-----~~i~eqa~Ld~ 243 (550)
..=...-+ .+......-++..+.+.|.+-..+-.......|..+-.. +..+.+.++ ..+..
T Consensus 228 ~~L~~~~~----~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~----~~~~~~~~~~~g~v~~Lv~------ 293 (528)
T 4b8j_A 228 SNFCRGKP----QPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDG----TNDKIQAVIEAGVCPRLVE------ 293 (528)
T ss_dssp HHHHCSSS----CCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSS----CHHHHHHHHHTTCHHHHHH------
T ss_pred HHHHcCCC----CCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcC----CHHHHHHHHHcCHHHHHHH------
Confidence 43111111 112233344555555666544332222334444444322 122222222 12221
Q ss_pred cCCCCChhhHHHHHHHHHHhhhhhccCCCchhHHH-HHHhhhcccCCCC-----ChhhhhhHHHHHHHhCCCCCchhhh-
Q 008865 244 QFNVSDADHIDRLISCLYMALPFFLRGASGSKFLN-YLNKHIIPVFDKL-----PEERKLDLLKALAEISPYTTPQDSR- 316 (550)
Q Consensus 244 ~f~~sD~d~idRli~cl~~Alp~fs~~v~st~f~~-y~~~~IlP~l~~L-----~~~~kl~lLK~lAE~s~~~~~~~a~- 316 (550)
-+...+++.....+. ++--++.+.. .... ++...++|.|-.+ ....+...+.+|..++.. ++....
T Consensus 294 lL~~~~~~v~~~a~~----~L~nl~~~~~--~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~-~~~~~~~ 366 (528)
T 4b8j_A 294 LLLHPSPSVLIPALR----TVGNIVTGDD--AQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAG-NKDQIQA 366 (528)
T ss_dssp HTTCSCHHHHHHHHH----HHHHHTTSCH--HHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTS-CHHHHHH
T ss_pred HHcCCChhHHHHHHH----HHHHHHcCCH--HHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCC-CHHHHHH
Confidence 122223332232222 2222322221 1111 2223445533322 335566677777777653 222222
Q ss_pred ----hhhHHHHHHHHhhCCCCCCCCCccchHHHHHHHHHHHHhhhc-Cchhhhh
Q 008865 317 ----QILPSVAVLLKKYMPLRKTGGEEMNFTYVECLLYTFHHLAHK-APNATNS 365 (550)
Q Consensus 317 ----~~l~~i~~~L~~~mP~~~~~~~~l~fS~vEcLL~afh~L~~k-~p~~l~~ 365 (550)
..+|.+..+|.. -+....+..++++.+|+.. .|+....
T Consensus 367 ~~~~~~i~~L~~lL~~-----------~~~~v~~~a~~aL~nl~~~~~~~~~~~ 409 (528)
T 4b8j_A 367 VINAGIIGPLVNLLQT-----------AEFDIKKEAAWAISNATSGGSHDQIKY 409 (528)
T ss_dssp HHHTTCHHHHHHHHHH-----------SCHHHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred HHHCCCHHHHHHHHhc-----------CCHHHHHHHHHHHHHHHcCCCHHHHHH
Confidence 345555555542 1456788889999999988 5665444
No 22
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=97.49 E-value=0.00081 Score=70.97 Aligned_cols=298 Identities=12% Similarity=0.059 Sum_probs=165.4
Q ss_pred HHHHHHHhc-CC-HHHHHHHhhhhhHHhccCCCcch-----HHHHHhhhhhcccchhHHHHHhhccccccccCcchhhh-
Q 008865 34 YEGIIEAAK-TS-LKAKQLAAQLIPRFFKFFPDLSS-----RAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSK- 105 (550)
Q Consensus 34 y~~Il~~~K-gs-~k~K~LAaQfI~kffk~FP~L~e-----~Ai~a~lDLcEDed~~IR~qaik~Lp~lck~~~e~~~r- 105 (550)
...++...+ ++ +..+.-|+..+......-|+... .++..++.|..+++..||.+|+..|..+|.+++++...
T Consensus 119 v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i 198 (528)
T 4b8j_A 119 VPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLV 198 (528)
T ss_dssp HHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHH
Confidence 445555555 44 78888899999888876665544 38889999999999999999999999999988776444
Q ss_pred ----HHHHHHHHH-hhchhHHHHHHHHHHHHHHhhch-------HHHHHHHHHhhccCCCCCChHHHHHHHHHHHhhhcc
Q 008865 106 ----IVDILVQLL-AAEEIVERDAVHKALMSLLRQDV-------KASLTALFKHIGSVDEPSTDEFIREKVLSFIRDKVF 173 (550)
Q Consensus 106 ----iaDVL~QLL-qsdd~~E~~~v~~aL~sllk~D~-------k~tLt~lf~qI~~~~e~~~eE~vREr~lkFl~~kl~ 173 (550)
+...|+++| .+.++..+..+-.+|..|....| .+.+..|...+. +++..+++.++.-|..=..
T Consensus 199 ~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~-----~~~~~v~~~a~~aL~~l~~ 273 (528)
T 4b8j_A 199 LANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQTRPALPALARLIH-----SNDEEVLTDACWALSYLSD 273 (528)
T ss_dssp HHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCCCHHHHTTHHHHHHHHTT-----CCCHHHHHHHHHHHHHHTS
T ss_pred HHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHC-----CCCHHHHHHHHHHHHHHHc
Confidence 456788888 56677778888888888877643 346666666665 5567788877765553111
Q ss_pred cchhhhcCChHHHHHHHHHHHHhhhcccchHHHHHHHHHHhhccccCCCCchhHHHHH-----HHHHHHhhcccccCCCC
Q 008865 174 PLKAELLKPQEEMERHITDLIKKSLEDVTGAEFRMFMDFLKSLSLFGEKAPTERMKEL-----IGIIEGQADLDAQFNVS 248 (550)
Q Consensus 174 ~l~~e~l~~~eE~Ee~i~~~ikKvL~dVt~~EF~l~m~lL~sL~~~~~~~~~gr~qeL-----v~~i~eqa~Ld~~f~~s 248 (550)
. ..+.. ..-.+.-++..+.+.|.+-+..--......|..+-.. .+..+ +.+ +..+... |.. ..
T Consensus 274 ~-~~~~~--~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~---~~~~~-~~~~~~~~l~~L~~l--L~~---~~ 341 (528)
T 4b8j_A 274 G-TNDKI--QAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTG---DDAQT-QCIIDHQALPCLLSL--LTQ---NL 341 (528)
T ss_dssp S-CHHHH--HHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTS---CHHHH-HHHHTTTHHHHHHHH--HHS---CC
T ss_pred C-CHHHH--HHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcC---CHHHH-HHHHHhhhHHHHHHH--HcC---CC
Confidence 1 11100 0001112334444555544322222233444444321 11111 111 1112111 111 11
Q ss_pred ChhhHHHHHHHHHHhhhhhccCCCchhHHHHH-HhhhcccCCCC----ChhhhhhHHHHHHHhCCCCCchhhhhhhHH-H
Q 008865 249 DADHIDRLISCLYMALPFFLRGASGSKFLNYL-NKHIIPVFDKL----PEERKLDLLKALAEISPYTTPQDSRQILPS-V 322 (550)
Q Consensus 249 D~d~idRli~cl~~Alp~fs~~v~st~f~~y~-~~~IlP~l~~L----~~~~kl~lLK~lAE~s~~~~~~~a~~~l~~-i 322 (550)
++........ ++--++.+ +...+.++ ...++|.|-.+ +.+.+...+.+|+-++...++.....++.. +
T Consensus 342 ~~~v~~~A~~----~L~nl~~~--~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~ 415 (528)
T 4b8j_A 342 KKSIKKEACW----TISNITAG--NKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGC 415 (528)
T ss_dssp CHHHHHHHHH----HHHHHHTS--CHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTC
T ss_pred cHHHHHHHHH----HHHHHHCC--CHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCC
Confidence 2222222222 22223322 22333333 33666654433 345677777777777665444444333222 4
Q ss_pred HHHHHhhCCCCCCCCCccchHHHHHHHHHHHHhhhcCch
Q 008865 323 AVLLKKYMPLRKTGGEEMNFTYVECLLYTFHHLAHKAPN 361 (550)
Q Consensus 323 ~~~L~~~mP~~~~~~~~l~fS~vEcLL~afh~L~~k~p~ 361 (550)
...|...+-.+ +-..++..+.++++|.+..+.
T Consensus 416 i~~L~~lL~~~-------d~~v~~~al~~L~~l~~~~~~ 447 (528)
T 4b8j_A 416 IKPLCDLLICP-------DIRIVTVCLEGLENILKVGET 447 (528)
T ss_dssp HHHHHHGGGCS-------CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCC-------CHHHHHHHHHHHHHHHHHHHH
Confidence 44455555331 235678888888888877665
No 23
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=97.49 E-value=0.0029 Score=58.83 Aligned_cols=133 Identities=18% Similarity=0.224 Sum_probs=105.8
Q ss_pred hHHHHHHHhc-CCHHHHHHHhhhhhHHhccCCCcch-----HHHHHhhhhhcccchhHHHHHhhccccccccCcchhhh-
Q 008865 33 DYEGIIEAAK-TSLKAKQLAAQLIPRFFKFFPDLSS-----RAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSK- 105 (550)
Q Consensus 33 ~y~~Il~~~K-gs~k~K~LAaQfI~kffk~FP~L~e-----~Ai~a~lDLcEDed~~IR~qaik~Lp~lck~~~e~~~r- 105 (550)
....++...+ +++..+.-|+..+.....+-|+... .++..++.+..++++.||..|...|-.+|..++++...
T Consensus 45 ~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 124 (252)
T 4hxt_A 45 GVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAI 124 (252)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred CHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 3555666666 7789999999999998887677655 47899999999999999999999999999888777553
Q ss_pred ----HHHHHHHHHhhchhHHHHHHHHHHHHHHhhchHH--------HHHHHHHhhccCCCCCChHHHHHHHHHHHhh
Q 008865 106 ----IVDILVQLLAAEEIVERDAVHKALMSLLRQDVKA--------SLTALFKHIGSVDEPSTDEFIREKVLSFIRD 170 (550)
Q Consensus 106 ----iaDVL~QLLqsdd~~E~~~v~~aL~sllk~D~k~--------tLt~lf~qI~~~~e~~~eE~vREr~lkFl~~ 170 (550)
+...|+++|.++++..+..+-.+|..+...++.. .+..|...+. ++++.+|+.++..|..
T Consensus 125 ~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~-----~~~~~v~~~a~~~L~~ 196 (252)
T 4hxt_A 125 VDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLT-----STDSEVQKEAARALAN 196 (252)
T ss_dssp HHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTT-----CSCHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCcCHHHHHHHHC-----CCCHHHHHHHHHHHHH
Confidence 6788999999999888888888888877655433 5666666665 5567888888877664
No 24
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=97.46 E-value=0.0057 Score=57.50 Aligned_cols=138 Identities=15% Similarity=0.164 Sum_probs=107.3
Q ss_pred ccChhhHHHHHHHhc-CCHHHHHHHhhhhhHHhccCCCc-----chHHHHHhhhhhcccchhHHHHHhhccccccccCcc
Q 008865 28 SQNVKDYEGIIEAAK-TSLKAKQLAAQLIPRFFKFFPDL-----SSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPE 101 (550)
Q Consensus 28 ~~~~~~y~~Il~~~K-gs~k~K~LAaQfI~kffk~FP~L-----~e~Ai~a~lDLcEDed~~IR~qaik~Lp~lck~~~e 101 (550)
+.....|..+....+ +++..+.-|++.+.++....++- ...+|..++.+..++++.||..|+..|-.+|.++++
T Consensus 8 ~~~~~~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~ 87 (252)
T 4db8_A 8 HHHGSELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE 87 (252)
T ss_dssp CCTTCSHHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHH
T ss_pred ccccchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHH
Confidence 356677888888777 77889999999998877753322 234778999999999999999999999999998877
Q ss_pred hhhh-----HHHHHHHHHhhchhHHHHHHHHHHHHHHhhchH--------HHHHHHHHhhccCCCCCChHHHHHHHHHHH
Q 008865 102 YLSK-----IVDILVQLLAAEEIVERDAVHKALMSLLRQDVK--------ASLTALFKHIGSVDEPSTDEFIREKVLSFI 168 (550)
Q Consensus 102 ~~~r-----iaDVL~QLLqsdd~~E~~~v~~aL~sllk~D~k--------~tLt~lf~qI~~~~e~~~eE~vREr~lkFl 168 (550)
+... +...|+++|.++++..+..+-.+|..+...++. +.+..|...+. +++..+|+.++..|
T Consensus 88 ~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~-----~~~~~v~~~a~~~L 162 (252)
T 4db8_A 88 QIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLS-----SPNEQILQEALWAL 162 (252)
T ss_dssp HHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGG-----CSCHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHh-----CCCHHHHHHHHHHH
Confidence 7544 677899999999888888888888877665443 36667777765 45677888877766
Q ss_pred hh
Q 008865 169 RD 170 (550)
Q Consensus 169 ~~ 170 (550)
..
T Consensus 163 ~~ 164 (252)
T 4db8_A 163 SN 164 (252)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 25
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=97.42 E-value=0.01 Score=65.48 Aligned_cols=295 Identities=9% Similarity=0.009 Sum_probs=151.8
Q ss_pred CHHHHHHHhhhhhHHhccCCCc-c-----hHHHHHhhhhhcccchhHHHHHhhccccccccCcch----hh-hHHHHHHH
Q 008865 44 SLKAKQLAAQLIPRFFKFFPDL-S-----SRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEY----LS-KIVDILVQ 112 (550)
Q Consensus 44 s~k~K~LAaQfI~kffk~FP~L-~-----e~Ai~a~lDLcEDed~~IR~qaik~Lp~lck~~~e~----~~-riaDVL~Q 112 (550)
+..++..|.+-+..+..++++- . +..+..+..++.|+|..||.+|++.|..++...+++ +. .+.+++.+
T Consensus 187 ~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~ 266 (876)
T 1qgr_A 187 SNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIE 266 (876)
T ss_dssp CHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 5788888988888877665532 1 235777888889999999999999999999877654 44 67777777
Q ss_pred HHhhchhHHHHHHHHHHHHHHhhch----------------------------HHHHHHHHHhhccCCCC--CChHHHHH
Q 008865 113 LLAAEEIVERDAVHKALMSLLRQDV----------------------------KASLTALFKHIGSVDEP--STDEFIRE 162 (550)
Q Consensus 113 LLqsdd~~E~~~v~~aL~sllk~D~----------------------------k~tLt~lf~qI~~~~e~--~~eE~vRE 162 (550)
.+.++++..+..+-+.+.++.+..+ ...+..++..+...++. +++..+|.
T Consensus 267 ~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~ 346 (876)
T 1qgr_A 267 AMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCK 346 (876)
T ss_dssp HHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHH
T ss_pred HhcCCchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhhcccccccccccHHHH
Confidence 7777666655555555555544310 23344455555432221 11224676
Q ss_pred HHHHHHhhhcccchhhhcCChHHHHHHHHHHHHhhhcccchHHHHHHHHHHhhccccCCCCch---hHHHHHHHHHHHhh
Q 008865 163 KVLSFIRDKVFPLKAELLKPQEEMERHITDLIKKSLEDVTGAEFRMFMDFLKSLSLFGEKAPT---ERMKELIGIIEGQA 239 (550)
Q Consensus 163 r~lkFl~~kl~~l~~e~l~~~eE~Ee~i~~~ikKvL~dVt~~EF~l~m~lL~sL~~~~~~~~~---gr~qeLv~~i~eqa 239 (550)
-+...|..=...++ +++-..++..+...|.|-....-...+..+..+-..- .|. ....+++..+...
T Consensus 347 ~a~~~l~~l~~~~~-------~~~~~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~--~~~~~~~~~~~~l~~l~~~- 416 (876)
T 1qgr_A 347 AAGVCLMLLATCCE-------DDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGP--EPSQLKPLVIQAMPTLIEL- 416 (876)
T ss_dssp HHHHHHHHHHHHHG-------GGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSS--CHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHCc-------HhhHHHHHHHHHHHccCCChHHHHHHHHHHHHHHcCC--CHHHHHHHHHHHHHHHHHH-
Confidence 65555443111112 1223345566666665543333233333333332110 111 1123344444432
Q ss_pred cccccCCCCChhhHHHHHHHHHHhhhhhccCCCchhHHHHHHhhhcccCCCCChhhhhhHHHHHHHhCCCCC--------
Q 008865 240 DLDAQFNVSDADHIDRLISCLYMALPFFLRGASGSKFLNYLNKHIIPVFDKLPEERKLDLLKALAEISPYTT-------- 311 (550)
Q Consensus 240 ~Ld~~f~~sD~d~idRli~cl~~Alp~fs~~v~st~f~~y~~~~IlP~l~~L~~~~kl~lLK~lAE~s~~~~-------- 311 (550)
|. ..++..-...+.++.+....+.......+++.-+...++..+++ +...+...++.|..++..|+
T Consensus 417 -l~----d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~-~~~v~~~a~~al~~l~~~~~~~~~~~~~ 490 (876)
T 1qgr_A 417 -MK----DPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSA-EPRVASNVCWAFSSLAEAAYEAADVADD 490 (876)
T ss_dssp -HT----CSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTTS-CHHHHHHHHHHHHHHHHHHHHTTSCTTS
T ss_pred -hC----CCCHHHHHHHHHHHHHHHHhCchhcccHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHhhhccccccc
Confidence 11 12222223333444333333332222335555555555555555 33445555555555543322
Q ss_pred -----chhhhhhhHHHHHHHHhhCCCCCCCCCccchHHHHHHHHHHHH
Q 008865 312 -----PQDSRQILPSVAVLLKKYMPLRKTGGEEMNFTYVECLLYTFHH 354 (550)
Q Consensus 312 -----~~~a~~~l~~i~~~L~~~mP~~~~~~~~l~fS~vEcLL~afh~ 354 (550)
.......++.|...|...+-.+......+.-..+||+-.....
T Consensus 491 ~~~~~~~~l~~~~~~il~~L~~~l~~~~~~~~~~r~~~~~~l~~l~~~ 538 (876)
T 1qgr_A 491 QEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKN 538 (876)
T ss_dssp CCCCCCCSSTTTHHHHHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHHT
T ss_pred cccccchhhhHhHHHHHHHHHHHHhCcCcchhhHHHHHHHHHHHHHHH
Confidence 1223346777888888877654322234444455555444333
No 26
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=97.37 E-value=0.0013 Score=60.24 Aligned_cols=132 Identities=14% Similarity=0.091 Sum_probs=101.6
Q ss_pred hHHHHHHHhc-CCHHHHHHHhhhhhHHhccCCCcchH-----HHHHhhhhhcccchhHHHHHhhccccccccCcchhhh-
Q 008865 33 DYEGIIEAAK-TSLKAKQLAAQLIPRFFKFFPDLSSR-----AVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSK- 105 (550)
Q Consensus 33 ~y~~Il~~~K-gs~k~K~LAaQfI~kffk~FP~L~e~-----Ai~a~lDLcEDed~~IR~qaik~Lp~lck~~~e~~~r- 105 (550)
....++...+ +++..+.-|+..+.......|+.... ++..++.+..+.|..||..|...|-.+|.+++++...
T Consensus 55 ~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 134 (210)
T 4db6_A 55 ALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAV 134 (210)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 3456666666 77889999999999887766665433 6789999999999999999999999999988877533
Q ss_pred ----HHHHHHHHHhhchhHHHHHHHHHHHHHHhhchH--------HHHHHHHHhhccCCCCCChHHHHHHHHHHHh
Q 008865 106 ----IVDILVQLLAAEEIVERDAVHKALMSLLRQDVK--------ASLTALFKHIGSVDEPSTDEFIREKVLSFIR 169 (550)
Q Consensus 106 ----iaDVL~QLLqsdd~~E~~~v~~aL~sllk~D~k--------~tLt~lf~qI~~~~e~~~eE~vREr~lkFl~ 169 (550)
+...|+++|.++++..+..+-.+|..+...++. +.+..|..-+. ++++.+|+.+...|.
T Consensus 135 ~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~ll~-----~~~~~v~~~a~~aL~ 205 (210)
T 4db6_A 135 IDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQS-----HENEKIQKEAQEALE 205 (210)
T ss_dssp HHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHGGG-----CSCHHHHHHHHHHHH
T ss_pred HHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHh-----CCCHHHHHHHHHHHH
Confidence 678999999999888888888888888876433 34455555444 456677777776654
No 27
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=97.32 E-value=0.02 Score=54.49 Aligned_cols=153 Identities=14% Similarity=0.225 Sum_probs=110.9
Q ss_pred CCHHHHHHHhhhhhHHhccCCCc----chHHHHHhhhhhc-ccchhHHHHHhhccccccccCc----chhhhHHHHHHHH
Q 008865 43 TSLKAKQLAAQLIPRFFKFFPDL----SSRAVDAHLDLIE-EEELGVRVQAIRGLPLFCKDTP----EYLSKIVDILVQL 113 (550)
Q Consensus 43 gs~k~K~LAaQfI~kffk~FP~L----~e~Ai~a~lDLcE-Ded~~IR~qaik~Lp~lck~~~----e~~~riaDVL~QL 113 (550)
.+-++++-|+.-|....+.-|++ -.+.++++..+.. |.+..||..|.+.|..+|+.-. .|+..+...|...
T Consensus 27 ~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~~~ilp~ll~~ 106 (242)
T 2qk2_A 27 KKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYASACVPSLLEK 106 (242)
T ss_dssp SSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHG
T ss_pred CCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 56777777777777777654432 2577889999996 9999999999999999997432 4677888888998
Q ss_pred HhhchhHHHHHHHHHHHHHHhh-chHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhhhcccchhh-hcCChHHHHHHHH
Q 008865 114 LAAEEIVERDAVHKALMSLLRQ-DVKASLTALFKHIGSVDEPSTDEFIREKVLSFIRDKVFPLKAE-LLKPQEEMERHIT 191 (550)
Q Consensus 114 Lqsdd~~E~~~v~~aL~sllk~-D~k~tLt~lf~qI~~~~e~~~eE~vREr~lkFl~~kl~~l~~e-~l~~~eE~Ee~i~ 191 (550)
|.+..+..+.++..+|..++.. .....+..|+..+. .....+|+.++.||..-+....++ .. .... ..++
T Consensus 107 l~d~~~~vr~~a~~aL~~~~~~~~~~~ll~~l~~~l~-----~~~~~vr~~~l~~l~~~l~~~~~~~~~--~~~l-~~l~ 178 (242)
T 2qk2_A 107 FKEKKPNVVTALREAIDAIYASTSLEAQQESIVESLS-----NKNPSVKSETALFIARALTRTQPTALN--KKLL-KLLT 178 (242)
T ss_dssp GGCCCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHTT-----CSCHHHHHHHHHHHHHHHTTCCGGGCC--HHHH-HHHH
T ss_pred HcCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-----CCChHHHHHHHHHHHHHHHHcCCCCcc--HHHH-HHHH
Confidence 8888889999999999999986 44555666666654 345679999999998766554322 22 2222 3455
Q ss_pred HHHHhhhcccch
Q 008865 192 DLIKKSLEDVTG 203 (550)
Q Consensus 192 ~~ikKvL~dVt~ 203 (550)
..+.+.|.|-..
T Consensus 179 p~l~~~l~D~~~ 190 (242)
T 2qk2_A 179 TSLVKTLNEPDP 190 (242)
T ss_dssp HHHHHHHTSSCH
T ss_pred HHHHHHhcCCCh
Confidence 666666665443
No 28
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=97.23 E-value=0.0039 Score=63.03 Aligned_cols=132 Identities=16% Similarity=0.134 Sum_probs=104.1
Q ss_pred HHHHHH-Hhc-CCHHHHHHHhhhhhHHhccCCCcchH-----HHHHhhhhhcc-cchhHHHHHhhccccccccCcchhhh
Q 008865 34 YEGIIE-AAK-TSLKAKQLAAQLIPRFFKFFPDLSSR-----AVDAHLDLIEE-EELGVRVQAIRGLPLFCKDTPEYLSK 105 (550)
Q Consensus 34 y~~Il~-~~K-gs~k~K~LAaQfI~kffk~FP~L~e~-----Ai~a~lDLcED-ed~~IR~qaik~Lp~lck~~~e~~~r 105 (550)
...++. ..+ +++..+.-|+..|..-....|+.+.. |+..++.|... .+..||..|+..|..+|++++.....
T Consensus 83 l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~ 162 (296)
T 1xqr_A 83 MHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQ 162 (296)
T ss_dssp HHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcHHHHH
Confidence 455666 555 88999999999999999999988764 67789999985 48899999999999999998765433
Q ss_pred -----HHHHHHHHHhhchhHHHHHHHHHHHHHHhhch--------HHHHHHHHHhhccCCCCCChHHHHHHHHHHHhh
Q 008865 106 -----IVDILVQLLAAEEIVERDAVHKALMSLLRQDV--------KASLTALFKHIGSVDEPSTDEFIREKVLSFIRD 170 (550)
Q Consensus 106 -----iaDVL~QLLqsdd~~E~~~v~~aL~sllk~D~--------k~tLt~lf~qI~~~~e~~~eE~vREr~lkFl~~ 170 (550)
+..+|+++|++.++.-...+-.+|..+...++ .+.+..|+..+. +.+..+|+.++.-|..
T Consensus 163 ~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~Lv~LL~-----~~d~~v~~~al~aL~~ 235 (296)
T 1xqr_A 163 FLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVR-----TEHSPFHEHVLGALCS 235 (296)
T ss_dssp HHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHT-----SCCSTHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHHHHHHHHc-----CCChhHHHHHHHHHHH
Confidence 55599999999888888888888888876544 356677777776 4456788888877664
No 29
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=97.00 E-value=0.023 Score=51.87 Aligned_cols=121 Identities=21% Similarity=0.224 Sum_probs=94.3
Q ss_pred cChhhHHHHHHHhc-CCHHHHHHHhhhhhHHhccCCCcchHHHHHhhhhhcccchhHHHHHhhccccccccCcchhhhHH
Q 008865 29 QNVKDYEGIIEAAK-TSLKAKQLAAQLIPRFFKFFPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIV 107 (550)
Q Consensus 29 ~~~~~y~~Il~~~K-gs~k~K~LAaQfI~kffk~FP~L~e~Ai~a~lDLcEDed~~IR~qaik~Lp~lck~~~e~~~ria 107 (550)
-+...+..+|...+ +++.++.-|+..+.++-. ..++..++.+..|+|..||..|++.|..++. +...
T Consensus 11 ~~~~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~------~~~~ 78 (201)
T 3ltj_A 11 TDPEKVEMYIKNLQDDSYYVRRAAAYALGKIGD------ERAVEPLIKALKDEDAWVRRAAADALGQIGD------ERAV 78 (201)
T ss_dssp CCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHCC------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC------GGGH
T ss_pred cCCcchHHHHHHhcCCCHHHHHHHHHHHHhcCC------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC------HHHH
Confidence 46778889999888 889999999999887643 4789999999999999999999999998874 2577
Q ss_pred HHHHHHHhhchhHHHHHHHHHHHHHHhhchHHHHHHHHHhhccCCCCCChHHHHHHHHHHHh
Q 008865 108 DILVQLLAAEEIVERDAVHKALMSLLRQDVKASLTALFKHIGSVDEPSTDEFIREKVLSFIR 169 (550)
Q Consensus 108 DVL~QLLqsdd~~E~~~v~~aL~sllk~D~k~tLt~lf~qI~~~~e~~~eE~vREr~lkFl~ 169 (550)
+.|..+|.++++..+..+-.+|..+-. ...+..|...+. +.+..+|..++.-|.
T Consensus 79 ~~L~~~l~d~~~~vr~~a~~aL~~~~~---~~~~~~L~~~l~-----d~~~~vr~~a~~aL~ 132 (201)
T 3ltj_A 79 EPLIKALKDEDGWVRQSAAVALGQIGD---ERAVEPLIKALK-----DEDWFVRIAAAFALG 132 (201)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHHCC---GGGHHHHHHHTT-----CSSHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhCc---HHHHHHHHHHHc-----CCCHHHHHHHHHHHH
Confidence 889999999888877777777766543 334455555554 556778888877654
No 30
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=96.99 E-value=0.011 Score=55.60 Aligned_cols=132 Identities=17% Similarity=0.129 Sum_probs=102.4
Q ss_pred HHHHHHHhc-CCHHHHHHHhhhhhHHhccCCCcchH-----HHHHhhhhhcccchhHHHHHhhccccccccCcchhh---
Q 008865 34 YEGIIEAAK-TSLKAKQLAAQLIPRFFKFFPDLSSR-----AVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLS--- 104 (550)
Q Consensus 34 y~~Il~~~K-gs~k~K~LAaQfI~kffk~FP~L~e~-----Ai~a~lDLcEDed~~IR~qaik~Lp~lck~~~e~~~--- 104 (550)
...++...+ +++..+.-|+..+.......|+.... ++..++.+..++++.||..|+..|-.+|.+.+....
T Consensus 56 i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 135 (252)
T 4db8_A 56 LPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVI 135 (252)
T ss_dssp HHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHH
Confidence 445666666 67889999999999998877776654 788999999999999999999999999998754312
Q ss_pred --hHHHHHHHHHhhchhHHHHHHHHHHHHHHhhchH--------HHHHHHHHhhccCCCCCChHHHHHHHHHHHhh
Q 008865 105 --KIVDILVQLLAAEEIVERDAVHKALMSLLRQDVK--------ASLTALFKHIGSVDEPSTDEFIREKVLSFIRD 170 (550)
Q Consensus 105 --riaDVL~QLLqsdd~~E~~~v~~aL~sllk~D~k--------~tLt~lf~qI~~~~e~~~eE~vREr~lkFl~~ 170 (550)
.+.+.|+++|.++++..+..+-.+|..+...++. +.+..|+.-+. ++++.+|+.++..|..
T Consensus 136 ~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~-----~~~~~v~~~a~~~L~~ 206 (252)
T 4db8_A 136 DAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLS-----SPNEQILQEALWALSN 206 (252)
T ss_dssp HTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHGGG-----CSSHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHC-----CCCHHHHHHHHHHHHH
Confidence 2778999999999888888888888888765432 33555666555 4567788888876664
No 31
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=96.96 E-value=0.026 Score=51.96 Aligned_cols=121 Identities=21% Similarity=0.223 Sum_probs=94.0
Q ss_pred cChhhHHHHHHHhc-CCHHHHHHHhhhhhHHhccCCCcchHHHHHhhhhhcccchhHHHHHhhccccccccCcchhhhHH
Q 008865 29 QNVKDYEGIIEAAK-TSLKAKQLAAQLIPRFFKFFPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIV 107 (550)
Q Consensus 29 ~~~~~y~~Il~~~K-gs~k~K~LAaQfI~kffk~FP~L~e~Ai~a~lDLcEDed~~IR~qaik~Lp~lck~~~e~~~ria 107 (550)
.+.+....++...+ +++.++..|+..+.++-. ..++..++.+..|+|..||..|++.|-.++. +...
T Consensus 16 ~~~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~------~~~~ 83 (211)
T 3ltm_A 16 ADPEKVEMYIKNLQDDSYYVRRAAAYALGKIGD------ERAVEPLIKALKDEDAWVRRAAADALGQIGD------ERAV 83 (211)
T ss_dssp CCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC------GGGH
T ss_pred cCHhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC------HHHH
Confidence 56777888888877 788899899888887643 5899999999999999999999999999874 3567
Q ss_pred HHHHHHHhhchhHHHHHHHHHHHHHHhhchHHHHHHHHHhhccCCCCCChHHHHHHHHHHHh
Q 008865 108 DILVQLLAAEEIVERDAVHKALMSLLRQDVKASLTALFKHIGSVDEPSTDEFIREKVLSFIR 169 (550)
Q Consensus 108 DVL~QLLqsdd~~E~~~v~~aL~sllk~D~k~tLt~lf~qI~~~~e~~~eE~vREr~lkFl~ 169 (550)
+.|.++|.++++..+..+-.+|..+-. ...+..|...+. +++..+|..++.-|.
T Consensus 84 ~~L~~~l~~~~~~vr~~a~~aL~~~~~---~~~~~~L~~~l~-----d~~~~vr~~a~~aL~ 137 (211)
T 3ltm_A 84 EPLIKALKDEDGWVRQSAAVALGQIGD---ERAVEPLIKALK-----DEDWFVRIAAAFALG 137 (211)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHHCC---GGGHHHHHHHTT-----CSSHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhCc---HHHHHHHHHHHh-----CCCHHHHHHHHHHHH
Confidence 889999999888877777776665533 334555555554 556778988877654
No 32
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=96.94 E-value=0.014 Score=56.21 Aligned_cols=115 Identities=14% Similarity=0.082 Sum_probs=69.6
Q ss_pred CCHHHHHHHhhhhhHHhccCCCcchHHHHHhhhhhcccchhHHHHHhhccccccccCcchhhhHHHHHHHHHhhchhHHH
Q 008865 43 TSLKAKQLAAQLIPRFFKFFPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQLLAAEEIVER 122 (550)
Q Consensus 43 gs~k~K~LAaQfI~kffk~FP~L~e~Ai~a~lDLcEDed~~IR~qaik~Lp~lck~~~e~~~riaDVL~QLLqsdd~~E~ 122 (550)
.++.++.-|+.-+.++-...|.....++..++.+..|+|+.||..|+..|..+... ...+.|.++|.++++..+
T Consensus 103 ~~~~vr~~a~~aL~~l~~~~~~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~~------~~~~~L~~~l~d~~~~vr 176 (280)
T 1oyz_A 103 KSACVRATAIESTAQRCKKNPIYSPKIVEQSQITAFDKSTNVRRATAFAISVINDK------ATIPLLINLLKDPNGDVR 176 (280)
T ss_dssp SCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC---------CCHHHHHHHHTCSSHHHH
T ss_pred CCHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCCH------HHHHHHHHHHcCCCHHHH
Confidence 55666666777676666666666666777777777777777777777777666531 355666667766666666
Q ss_pred HHHHHHHHHHHhhchHHHHHHHHHhhccCCCCCChHHHHHHHHHHHh
Q 008865 123 DAVHKALMSLLRQDVKASLTALFKHIGSVDEPSTDEFIREKVLSFIR 169 (550)
Q Consensus 123 ~~v~~aL~sllk~D~k~tLt~lf~qI~~~~e~~~eE~vREr~lkFl~ 169 (550)
..+-.+|..+ ..+....+..|...+. +++..+|..++.-|.
T Consensus 177 ~~a~~aL~~~-~~~~~~~~~~L~~~l~-----d~~~~vR~~A~~aL~ 217 (280)
T 1oyz_A 177 NWAAFAININ-KYDNSDIRDCFVEMLQ-----DKNEEVRIEAIIGLS 217 (280)
T ss_dssp HHHHHHHHHH-TCCCHHHHHHHHHHTT-----CSCHHHHHHHHHHHH
T ss_pred HHHHHHHHhh-ccCcHHHHHHHHHHhc-----CCCHHHHHHHHHHHH
Confidence 6666666443 2334455555555554 344566666665443
No 33
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=96.82 E-value=0.0092 Score=55.02 Aligned_cols=119 Identities=22% Similarity=0.255 Sum_probs=83.3
Q ss_pred hhhHHHHHHHhc-CCHHHHHHHhhhhhHHhccCCCcchHHHHHhhhhhcccchhHHHHHhhccccccccCcchhhhHHHH
Q 008865 31 VKDYEGIIEAAK-TSLKAKQLAAQLIPRFFKFFPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDI 109 (550)
Q Consensus 31 ~~~y~~Il~~~K-gs~k~K~LAaQfI~kffk~FP~L~e~Ai~a~lDLcEDed~~IR~qaik~Lp~lck~~~e~~~riaDV 109 (550)
.+....++...+ +++.++..|+..+.++- ..+++..++.+..|+|+.||..|+..|-.++. +...+.
T Consensus 49 ~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~------~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~------~~~~~~ 116 (211)
T 3ltm_A 49 ERAVEPLIKALKDEDAWVRRAAADALGQIG------DERAVEPLIKALKDEDGWVRQSAAVALGQIGD------ERAVEP 116 (211)
T ss_dssp GGGHHHHHHHTTCSCHHHHHHHHHHHHHHC------CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC------GGGHHH
T ss_pred ccHHHHHHHHHcCCCHHHHHHHHHHHHhhC------CHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc------HHHHHH
Confidence 355666777666 77888888888887764 24678888888888888899999998888864 246678
Q ss_pred HHHHHhhchhHHHHHHHHHHHHHHhhchHHHHHHHHHhhccCCCCCChHHHHHHHHHHHh
Q 008865 110 LVQLLAAEEIVERDAVHKALMSLLRQDVKASLTALFKHIGSVDEPSTDEFIREKVLSFIR 169 (550)
Q Consensus 110 L~QLLqsdd~~E~~~v~~aL~sllk~D~k~tLt~lf~qI~~~~e~~~eE~vREr~lkFl~ 169 (550)
|.++|.++++..+..+-.+|-.+-. ...+..|...+. +.+..||..++.-|.
T Consensus 117 L~~~l~d~~~~vr~~a~~aL~~~~~---~~~~~~L~~~l~-----d~~~~vr~~a~~aL~ 168 (211)
T 3ltm_A 117 LIKALKDEDWFVRIAAAFALGEIGD---ERAVEPLIKALK-----DEDGWVRQSAADALG 168 (211)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHCC---GGGHHHHHHHTT-----CSSHHHHHHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHc-----CCCHHHHHHHHHHHH
Confidence 8888888888777777777666533 334444444443 445677776665544
No 34
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=96.81 E-value=0.011 Score=54.12 Aligned_cols=120 Identities=22% Similarity=0.261 Sum_probs=87.4
Q ss_pred hhhHHHHHHHhc-CCHHHHHHHhhhhhHHhccCCCcchHHHHHhhhhhcccchhHHHHHhhccccccccCcchhhhHHHH
Q 008865 31 VKDYEGIIEAAK-TSLKAKQLAAQLIPRFFKFFPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDI 109 (550)
Q Consensus 31 ~~~y~~Il~~~K-gs~k~K~LAaQfI~kffk~FP~L~e~Ai~a~lDLcEDed~~IR~qaik~Lp~lck~~~e~~~riaDV 109 (550)
.+....++...+ +++.++.-|+..+.++- ..+++..++.+..|+|+.||..|++.|-.++. +...+.
T Consensus 44 ~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~------~~~~~~ 111 (201)
T 3ltj_A 44 ERAVEPLIKALKDEDAWVRRAAADALGQIG------DERAVEPLIKALKDEDGWVRQSAAVALGQIGD------ERAVEP 111 (201)
T ss_dssp GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC------CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC------GGGHHH
T ss_pred hhHHHHHHHHHcCCCHHHHHHHHHHHHhhC------CHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc------HHHHHH
Confidence 355667777766 77888888888888763 24788899999999999999999999988864 257788
Q ss_pred HHHHHhhchhHHHHHHHHHHHHHHhhchHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhh
Q 008865 110 LVQLLAAEEIVERDAVHKALMSLLRQDVKASLTALFKHIGSVDEPSTDEFIREKVLSFIRD 170 (550)
Q Consensus 110 L~QLLqsdd~~E~~~v~~aL~sllk~D~k~tLt~lf~qI~~~~e~~~eE~vREr~lkFl~~ 170 (550)
|.++|.++++..+..+-.+|-.+-. ...+..|...+. +++..+|..++.-|..
T Consensus 112 L~~~l~d~~~~vr~~a~~aL~~~~~---~~~~~~L~~~l~-----d~~~~vr~~A~~aL~~ 164 (201)
T 3ltj_A 112 LIKALKDEDWFVRIAAAFALGEIGD---ERAVEPLIKALK-----DEDGWVRQSAADALGE 164 (201)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHTC---GGGHHHHHHHTT-----CSSHHHHHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHhCC---HHHHHHHHHHHc-----CCCHHHHHHHHHHHHH
Confidence 8889988888777777777766533 344455555544 4456788776665543
No 35
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=96.75 E-value=0.17 Score=59.15 Aligned_cols=297 Identities=14% Similarity=0.154 Sum_probs=172.4
Q ss_pred CCHHHHHHHhhhhhHHhccCCCcc----hHHHHHhhhhhcccchhHHHHHhhccccccccC-------------------
Q 008865 43 TSLKAKQLAAQLIPRFFKFFPDLS----SRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDT------------------- 99 (550)
Q Consensus 43 gs~k~K~LAaQfI~kffk~FP~L~----e~Ai~a~lDLcEDed~~IR~qaik~Lp~lck~~------------------- 99 (550)
.+.++++-|++.+..+...+|+.- ++.+..+++...|.+..||..|+..|..+|+..
T Consensus 345 ~~~~vR~~A~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ 424 (1230)
T 1u6g_C 345 MSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETP 424 (1230)
T ss_dssp CTTHHHHHHHHHHHHHHTTCCTTHHHHHTTTHHHHHSTTSCSSSHHHHHHHHHHHHHHHHHCCC------------CCCH
T ss_pred cCHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhccccccccCccccccccch
Confidence 456789999999999998888632 233566777778999999999999999888732
Q ss_pred ----cchhhhHHHHHHHHHhhchhHHHHHHHHHHHHHHhhch-------HHHHHHHHHhhccCCCCCChHHHHHHHHHHH
Q 008865 100 ----PEYLSKIVDILVQLLAAEEIVERDAVHKALMSLLRQDV-------KASLTALFKHIGSVDEPSTDEFIREKVLSFI 168 (550)
Q Consensus 100 ----~e~~~riaDVL~QLLqsdd~~E~~~v~~aL~sllk~D~-------k~tLt~lf~qI~~~~e~~~eE~vREr~lkFl 168 (550)
..+++.+...|.++|+++++.++..+-.+|..++...+ ...+..++..+.+ +.....+|+.++.++
T Consensus 425 ~~~~~~~l~~ll~~l~~~l~~~~~~vr~~~~~~L~~l~~~~~~~l~~~l~~ll~~l~~~L~d---~~~~~~v~~~a~~~l 501 (1230)
T 1u6g_C 425 LTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIFSLND---KSSSSNLKIDALSCL 501 (1230)
T ss_dssp HHHHHHHTTHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHTTC---SSSCHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHchhhhHHHHHHHHHHHHHHHcC---CCCcchHHHHHHHHH
Confidence 24788899999999999998888888888888877533 3445555555542 112346888888877
Q ss_pred hhhcccchhhhcCChHHHHHHHHHHHHhhhcccch---H-HHHHHHHHHhhccccCCC---CchhHHHHHHHHHHHhhcc
Q 008865 169 RDKVFPLKAELLKPQEEMERHITDLIKKSLEDVTG---A-EFRMFMDFLKSLSLFGEK---APTERMKELIGIIEGQADL 241 (550)
Q Consensus 169 ~~kl~~l~~e~l~~~eE~Ee~i~~~ikKvL~dVt~---~-EF~l~m~lL~sL~~~~~~---~~~gr~qeLv~~i~eqa~L 241 (550)
..-+...+.+.+. ..-..++..+.+.++|-.. . =...+-++...+...... .-......++..+... |
T Consensus 502 ~~~~~~~~~~~~~---~~l~~llp~L~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~ll~~ll~~--l 576 (1230)
T 1u6g_C 502 YVILCNHSPQVFH---PHVQALVPPVVACVGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTIKR--L 576 (1230)
T ss_dssp HHHHHSSCGGGGH---HHHTTTHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCCSSSCCCCCCHHHHHHHHHHHHHH--H
T ss_pred HHHHHhCCHHHHH---hHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHhcCcccccccchHHHHHHHHHHHHHH--H
Confidence 7654444333210 0111233444444554322 0 111233333333220000 0001124455555432 2
Q ss_pred cccCCCCChhhHHHHHHHHHHhhhhhccCCCchhHHHHHHhhhcccCCCCChhhhhhHHHHHHHhCCCCCchhhhhhhHH
Q 008865 242 DAQFNVSDADHIDRLISCLYMALPFFLRGASGSKFLNYLNKHIIPVFDKLPEERKLDLLKALAEISPYTTPQDSRQILPS 321 (550)
Q Consensus 242 d~~f~~sD~d~idRli~cl~~Alp~fs~~v~st~f~~y~~~~IlP~l~~L~~~~kl~lLK~lAE~s~~~~~~~a~~~l~~ 321 (550)
.. ...|++.-...+.|+......+.... .+++.-+...+.+.+. .+..+...++.+.+++......+....++.
T Consensus 577 ~~--~d~~~~vr~~a~~~lg~L~~~~g~~~--~~~~~~~l~~L~~~l~--~e~~r~~~~~al~~i~~~~~~~~~~~~~~~ 650 (1230)
T 1u6g_C 577 KA--ADIDQEVKERAISCMGQIICNLGDNL--GSDLPNTLQIFLERLK--NEITRLTTVKALTLIAGSPLKIDLRPVLGE 650 (1230)
T ss_dssp SC--SSSCHHHHHHHHHHHHHHHHHTGGGC--CTHHHHHHHHHHHHTT--SSSHHHHHHHHHHHHTTCSSCCCCHHHHHH
T ss_pred hc--cCCCHHHHHHHHHHHHHHHHHhCchh--hhhHHHHHHHHHHHhc--cchhHHHHHHHHHHHHhCccccchHHHHHH
Confidence 11 12344444566677776666554332 2333333333333222 234677889999998876555555667788
Q ss_pred HHHHHHhhCCCCCCCCCccchHHHHHHHHHHHHhh
Q 008865 322 VAVLLKKYMPLRKTGGEEMNFTYVECLLYTFHHLA 356 (550)
Q Consensus 322 i~~~L~~~mP~~~~~~~~l~fS~vEcLL~afh~L~ 356 (550)
|...|...+-.. +..+.+..++||--.+...+
T Consensus 651 i~~~L~~~l~~~---~~~~r~~a~~al~~l~~~~~ 682 (1230)
T 1u6g_C 651 GVPILASFLRKN---QRALKLGTLSALDILIKNYS 682 (1230)
T ss_dssp HHHHHHHHTTSC---CHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHhC---CHHHHHHHHHHHHHHHhccc
Confidence 888888777432 24455566666655554443
No 36
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=96.74 E-value=0.25 Score=47.30 Aligned_cols=123 Identities=9% Similarity=-0.003 Sum_probs=91.0
Q ss_pred HHHHHHhc-CCHHHHHHHhhhhhHHhccCCCcchHHHHHhhhhhcccchhHHHHHhhccccccccCcchhhhHHHHHHH-
Q 008865 35 EGIIEAAK-TSLKAKQLAAQLIPRFFKFFPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQ- 112 (550)
Q Consensus 35 ~~Il~~~K-gs~k~K~LAaQfI~kffk~FP~L~e~Ai~a~lDLcEDed~~IR~qaik~Lp~lck~~~e~~~riaDVL~Q- 112 (550)
..++...+ +++.++..|+.-+.+.- ...++..++.++.|+|..||..|+..|..++... +.+..+..+|.+
T Consensus 26 ~~L~~~L~~~~~~vr~~A~~~L~~~~------~~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~-~~~~~l~~~L~~~ 98 (280)
T 1oyz_A 26 DELFRLLDDHNSLKRISSARVLQLRG------GQDAVRLAIEFCSDKNYIRRDIGAFILGQIKICK-KCEDNVFNILNNM 98 (280)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHHC------CHHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCT-TTHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHccC------CchHHHHHHHHHcCCCHHHHHHHHHHHHHhcccc-ccchHHHHHHHHH
Confidence 44555555 67888888888888764 4689999999999999999999999999987543 446666677764
Q ss_pred HHhhchhHHHHHHHHHHHHHHhhc---hHHHHHHHHHhhccCCCCCChHHHHHHHHHHHh
Q 008865 113 LLAAEEIVERDAVHKALMSLLRQD---VKASLTALFKHIGSVDEPSTDEFIREKVLSFIR 169 (550)
Q Consensus 113 LLqsdd~~E~~~v~~aL~sllk~D---~k~tLt~lf~qI~~~~e~~~eE~vREr~lkFl~ 169 (550)
++.++++..+..+-.+|..+-..+ ....+..|...+. +.+..+|..++.-|.
T Consensus 99 ~~~d~~~~vr~~a~~aL~~l~~~~~~~~~~~~~~L~~~l~-----d~~~~vR~~a~~aL~ 153 (280)
T 1oyz_A 99 ALNDKSACVRATAIESTAQRCKKNPIYSPKIVEQSQITAF-----DKSTNVRRATAFAIS 153 (280)
T ss_dssp HHHCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHTT-----CSCHHHHHHHHHHHH
T ss_pred HhcCCCHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHhh-----CCCHHHHHHHHHHHH
Confidence 567777888888888888876543 3445555555554 556778988887665
No 37
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=96.65 E-value=0.012 Score=58.80 Aligned_cols=80 Identities=20% Similarity=0.294 Sum_probs=51.4
Q ss_pred CCcchHHHHHhhhhhcccchhHHHHHhhccccccccCcchhhhHHHHHHHHHhhchhHHHHHHHHHHHHHHhhchHHHHH
Q 008865 63 PDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQLLAAEEIVERDAVHKALMSLLRQDVKASLT 142 (550)
Q Consensus 63 P~L~e~Ai~a~lDLcEDed~~IR~qaik~Lp~lck~~~e~~~riaDVL~QLLqsdd~~E~~~v~~aL~sllk~D~k~tLt 142 (550)
|+|-++-++.++.++-|.+..||++.+.=|-+.|+..+++++++.+.|.-||..+++..+..+=.+..++|+.
T Consensus 48 p~ll~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~k~~l~~~~l~~L~~Ll~d~d~~V~K~~I~~~~~iY~~------- 120 (257)
T 3gs3_A 48 AELAEEFLESVLSLAHDSNMEVRKQVVAFVEQVCKVKVELLPHVINVVSMLLRDNSAQVIKRVIQACGSIYKN------- 120 (257)
T ss_dssp GGGHHHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHH-------
T ss_pred HhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH-------
Confidence 5555555666677777777777777777777777777777777777777777766655444444444444443
Q ss_pred HHHHhhcc
Q 008865 143 ALFKHIGS 150 (550)
Q Consensus 143 ~lf~qI~~ 150 (550)
+|.|+..
T Consensus 121 -~l~~i~~ 127 (257)
T 3gs3_A 121 -GLQYLCS 127 (257)
T ss_dssp -HHHHHTT
T ss_pred -HHHHHhc
Confidence 4666654
No 38
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=96.64 E-value=0.036 Score=64.81 Aligned_cols=136 Identities=17% Similarity=0.176 Sum_probs=97.2
Q ss_pred hHHHHHHHhc-CCHHHHHHHhhhhhHHhcc-C----CCcchHHHHHhhhhhcccchhHHHHHhhccccccccCc-chhhh
Q 008865 33 DYEGIIEAAK-TSLKAKQLAAQLIPRFFKF-F----PDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTP-EYLSK 105 (550)
Q Consensus 33 ~y~~Il~~~K-gs~k~K~LAaQfI~kffk~-F----P~L~e~Ai~a~lDLcEDed~~IR~qaik~Lp~lck~~~-e~~~r 105 (550)
.+..+|.... .++..++.|...+-++++. + |+..+..+..+++...|.+..||..|++.|..++..-+ +++..
T Consensus 7 ~l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~~~~~~ 86 (1230)
T 1u6g_C 7 HISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEYQVET 86 (1230)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred HHHHHHHhcCCCCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 3455666665 6667777776767666542 1 23456888999999999999999999999998886543 46788
Q ss_pred HHHHHHHHHhhchhHHHHHHHHHHHHHHhhch-------------HHHHHHHHHhhccCCCCCChHHHHHHHHHHHhhhc
Q 008865 106 IVDILVQLLAAEEIVERDAVHKALMSLLRQDV-------------KASLTALFKHIGSVDEPSTDEFIREKVLSFIRDKV 172 (550)
Q Consensus 106 iaDVL~QLLqsdd~~E~~~v~~aL~sllk~D~-------------k~tLt~lf~qI~~~~e~~~eE~vREr~lkFl~~kl 172 (550)
+.+.|.+.|.++++..+..+-.+|.++...-+ ...+..|+..+.+ +++..+|+-++..+..-+
T Consensus 87 i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~----~~~~~~~~~al~~l~~~~ 162 (1230)
T 1u6g_C 87 IVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAK----QEDVSVQLEALDIMADML 162 (1230)
T ss_dssp HHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSC----CSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcC----CCchHHHHHHHHHHHHHH
Confidence 99999999988888888888889888876532 2334445554431 244567888887776543
No 39
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=96.56 E-value=0.0049 Score=65.07 Aligned_cols=75 Identities=21% Similarity=0.219 Sum_probs=63.7
Q ss_pred cCCCcchHHHHHhhhhhcccchhHHHHHhhccccccccCcchhhhHHHHHHHHHhhchhHHHHHHHHHHHHHHhh
Q 008865 61 FFPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQLLAAEEIVERDAVHKALMSLLRQ 135 (550)
Q Consensus 61 ~FP~L~e~Ai~a~lDLcEDed~~IR~qaik~Lp~lck~~~e~~~riaDVL~QLLqsdd~~E~~~v~~aL~sllk~ 135 (550)
.=|+|-++-++-++.++-|.+..||++.+-=|-+.|+..+|++.++.|+|.-||.++++..+..|=.+..++|+.
T Consensus 56 ~dpsLl~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~~~el~~~~l~~L~~LL~d~d~~V~K~~I~~~tslYpl 130 (386)
T 3o2t_A 56 KDPTLLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKRDIELLLKLIANLNMLLRDENVNVVKKAILTMTQLYKV 130 (386)
T ss_dssp TCGGGGGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 367888888889999999999999999999999999999999999999999999988887666666666666644
No 40
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=96.46 E-value=0.065 Score=58.77 Aligned_cols=116 Identities=12% Similarity=0.105 Sum_probs=84.8
Q ss_pred HHHHhhhhhHHhccCCCcchHHHHHhhhhhcccchhHHHHHhhccccccccCcchhhhHHHHHHHHHhhchhHHHHHHHH
Q 008865 48 KQLAAQLIPRFFKFFPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQLLAAEEIVERDAVHK 127 (550)
Q Consensus 48 K~LAaQfI~kffk~FP~L~e~Ai~a~lDLcEDed~~IR~qaik~Lp~lck~~~e~~~riaDVL~QLLqsdd~~E~~~v~~ 127 (550)
..=|++.|-.. ..-|++...|++.+..++++.|+.||-.|+..|-.++..+|+.+.+.-+.+..+|..+|..-+..+=.
T Consensus 294 ~~ea~~~i~~l-~~~~~l~~~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p~~~~~~~~~i~~~l~d~d~~Ir~~ale 372 (618)
T 1w63_A 294 LYETVLTIMDI-KSESGLRVLAINILGRFLLNNDKNIRYVALTSLLKTVQTDHNAVQRHRSTIVDCLKDLDVSIKRRAME 372 (618)
T ss_dssp HHHHHHHHHHS-CCCHHHHHHHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHHHHHHGGGHHHHHHGGGSSCHHHHHHHHH
T ss_pred HHHHHHHHHhc-CCCHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHhhCHHHHHHHHHHHHHHccCCChhHHHHHHH
Confidence 33344444432 22355566799999999999999999999999999999999988888888888998888766665555
Q ss_pred HHHHHHhh-chHHHHHHHHHhhccCCCCCChHHHHHHHHHHHh
Q 008865 128 ALMSLLRQ-DVKASLTALFKHIGSVDEPSTDEFIREKVLSFIR 169 (550)
Q Consensus 128 aL~sllk~-D~k~tLt~lf~qI~~~~e~~~eE~vREr~lkFl~ 169 (550)
.|..+... +....+..|...+. +.++.+|..++..|.
T Consensus 373 lL~~l~~~~nv~~iv~eL~~~l~-----~~d~e~r~~~v~~I~ 410 (618)
T 1w63_A 373 LSFALVNGNNIRGMMKELLYFLD-----SCEPEFKADCASGIF 410 (618)
T ss_dssp HHHHHCCSSSTHHHHHHHHHHHH-----HCCHHHHHHHHHHHH
T ss_pred HHHHHcccccHHHHHHHHHHHHH-----hCCHHHHHHHHHHHH
Confidence 55555554 34567777888776 455677777766554
No 41
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=96.27 E-value=0.098 Score=59.03 Aligned_cols=127 Identities=16% Similarity=0.177 Sum_probs=86.0
Q ss_pred HHHHHhc-CCHHHHHHHhhhhhHHhccCCCcchHHHHHhhhhhcccchhHHHHHhhccccccccCcch-----hhhHHHH
Q 008865 36 GIIEAAK-TSLKAKQLAAQLIPRFFKFFPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEY-----LSKIVDI 109 (550)
Q Consensus 36 ~Il~~~K-gs~k~K~LAaQfI~kffk~FP~L~e~Ai~a~lDLcEDed~~IR~qaik~Lp~lck~~~e~-----~~riaDV 109 (550)
.++...+ ++...++-++++|.+- .-+.+...+|..++.|..++|+.||..|+..|-.||++...- ...+...
T Consensus 119 ~lv~~L~~~~~~~r~~a~~~l~~~--~~~~i~~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~~~~~~~i~~~~~~i~~ 196 (780)
T 2z6g_A 119 TNVQRLAEPSQMLKHAVVNLINYQ--DDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSA 196 (780)
T ss_dssp -------CCSCHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTSHHHHHHHTTCHHHHHH
T ss_pred HHHHHhcCccHHHHHHHHHHHHhh--hHHHHHhCCHHHHHHHHCCCCHHHHHHHHHHHHHHhCCChhHHHHHhccChHHH
Confidence 3444333 6677777888887632 235677889999999999999999999999999999865211 1246778
Q ss_pred HHHHHhhc-hhHHHHHHHHHHHHHHhhc-------hHHHHHHHHHhhccCCCCCChHHHHHHHHHHHh
Q 008865 110 LVQLLAAE-EIVERDAVHKALMSLLRQD-------VKASLTALFKHIGSVDEPSTDEFIREKVLSFIR 169 (550)
Q Consensus 110 L~QLLqsd-d~~E~~~v~~aL~sllk~D-------~k~tLt~lf~qI~~~~e~~~eE~vREr~lkFl~ 169 (550)
|+++|.++ ++..+..+-.+|..|-..+ -.+.+..|+..+. ++++.+|..++..|.
T Consensus 197 Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~~~~i~~~g~I~~Lv~lL~-----~~~~~v~~~A~~aL~ 259 (780)
T 2z6g_A 197 IVRTMQNTNDVETARCTSGTLHNLSHHREGLLAIFKSGGIPALVNMLG-----SPVDSVLFHAITTLH 259 (780)
T ss_dssp HHHHHHHCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHTT-----CSCHHHHHHHHHHHH
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHHhCCchhHHHHHHcCCHHHHHHHHc-----CCCHHHHHHHHHHHH
Confidence 88899875 6666777777777643321 1245666666665 456777877776555
No 42
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=96.23 E-value=0.44 Score=50.58 Aligned_cols=117 Identities=13% Similarity=0.216 Sum_probs=86.5
Q ss_pred hHHHHHHHhc-CCHHHHHHHhhhhhHHhcc--CCCcc----hHHHHHhhhhhc-ccchhHHHHHhhccccccccCcchhh
Q 008865 33 DYEGIIEAAK-TSLKAKQLAAQLIPRFFKF--FPDLS----SRAVDAHLDLIE-EEELGVRVQAIRGLPLFCKDTPEYLS 104 (550)
Q Consensus 33 ~y~~Il~~~K-gs~k~K~LAaQfI~kffk~--FP~L~----e~Ai~a~lDLcE-Ded~~IR~qaik~Lp~lck~~~e~~~ 104 (550)
....|+.+.+ ++...+.-|.+-+.|.-.. -|-.+ .-+|-.++.|.. ++++.|+..|...|-.||.+++++..
T Consensus 58 ~i~~~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~ 137 (510)
T 3ul1_B 58 SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTK 137 (510)
T ss_dssp CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence 4788999999 6666676777888777532 23221 124667888775 55588999999999999999999876
Q ss_pred hH-----HHHHHHHHhhchhHHHHHHHHHHHHHHhhchH--------HHHHHHHHhhc
Q 008865 105 KI-----VDILVQLLAAEEIVERDAVHKALMSLLRQDVK--------ASLTALFKHIG 149 (550)
Q Consensus 105 ri-----aDVL~QLLqsdd~~E~~~v~~aL~sllk~D~k--------~tLt~lf~qI~ 149 (550)
.| +..|+++|.+.++..+..+-.+|..|-.-.+. |.+..|...+.
T Consensus 138 ~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~ 195 (510)
T 3ul1_B 138 AVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLA 195 (510)
T ss_dssp HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTC
T ss_pred HHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHH
Confidence 65 45899999999998888888888888765443 34555666665
No 43
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=96.16 E-value=0.026 Score=48.91 Aligned_cols=112 Identities=15% Similarity=0.181 Sum_probs=75.7
Q ss_pred HHHHHhc-CCHHHHHHHhhhhhHHhccCCCcchHHHHHhhhhhcccchhHHHHHhhccccccccCcchhhhHHHHHHHHH
Q 008865 36 GIIEAAK-TSLKAKQLAAQLIPRFFKFFPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQLL 114 (550)
Q Consensus 36 ~Il~~~K-gs~k~K~LAaQfI~kffk~FP~L~e~Ai~a~lDLcEDed~~IR~qaik~Lp~lck~~~e~~~riaDVL~QLL 114 (550)
.++...+ .++..+..|+.-+.++ .+.++..++.+..|+|+.||..|++.|-.++. +...+.|..+|
T Consensus 16 ~l~~~L~~~~~~vR~~A~~~L~~~-------~~~~~~~L~~~L~d~~~~vR~~A~~aL~~~~~------~~a~~~L~~~L 82 (131)
T 1te4_A 16 PRGSHMADENKWVRRDVSTALSRM-------GDEAFEPLLESLSNEDWRIRGAAAWIIGNFQD------ERAVEPLIKLL 82 (131)
T ss_dssp -----CCSSCCCSSSSCCSSTTSC-------SSTTHHHHHHGGGCSCHHHHHHHHHHHGGGCS------HHHHHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHh-------CchHHHHHHHHHcCCCHHHHHHHHHHHHhcCC------HHHHHHHHHHH
Confidence 3444444 4555666666655543 22357889999999999999999999999874 35788888999
Q ss_pred hhchhHHHHHHHHHHHHHHhhchHHHHHHHHHhhccCCCCCChHHHHHHHHHHH
Q 008865 115 AAEEIVERDAVHKALMSLLRQDVKASLTALFKHIGSVDEPSTDEFIREKVLSFI 168 (550)
Q Consensus 115 qsdd~~E~~~v~~aL~sllk~D~k~tLt~lf~qI~~~~e~~~eE~vREr~lkFl 168 (550)
.++++..+..+-.+|..+- ...++..|...+. +++..||..++.-|
T Consensus 83 ~d~~~~VR~~A~~aL~~~~---~~~a~~~L~~~l~-----d~~~~vr~~A~~aL 128 (131)
T 1te4_A 83 EDDSGFVRSGAARSLEQIG---GERVRAAMEKLAE-----TGTGFARKVAVNYL 128 (131)
T ss_dssp HHCCTHHHHHHHHHHHHHC---SHHHHHHHHHHTT-----SCCTHHHHHHHHHG
T ss_pred cCCCHHHHHHHHHHHHHhC---cHHHHHHHHHHHh-----CCCHHHHHHHHHHH
Confidence 8888888888777776654 3445566665554 34567887776544
No 44
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=95.87 E-value=0.67 Score=51.06 Aligned_cols=130 Identities=10% Similarity=0.043 Sum_probs=101.5
Q ss_pred HHHHHHHhc-CCHHHHHHHhhhhhHHhccCCCcchHHHHHhhhhhcccchhHHHHHhhccccccccCcchhhhHHHHHHH
Q 008865 34 YEGIIEAAK-TSLKAKQLAAQLIPRFFKFFPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQ 112 (550)
Q Consensus 34 y~~Il~~~K-gs~k~K~LAaQfI~kffk~FP~L~e~Ai~a~lDLcEDed~~IR~qaik~Lp~lck~~~e~~~riaDVL~Q 112 (550)
|-.++.... .+...||++--.+..|++.-|++.--++|++..=+.|.++.||--|++.|..++ +|+++.-+..-+.+
T Consensus 76 ~~~vvkl~~s~~~~~Krl~YL~l~~~~~~~~e~~~L~iN~l~kDl~~~n~~ir~lALr~L~~i~--~~e~~~~l~~~v~~ 153 (621)
T 2vgl_A 76 HMEAVNLLSSNRYTEKQIGYLFISVLVNSNSELIRLINNAIKNDLASRNPTFMGLALHCIANVG--SREMAEAFAGEIPK 153 (621)
T ss_dssp HHHHHHGGGCSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHC--CHHHHHHHTTHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHhhccC--CHHHHHHHHHHHHH
Confidence 556666555 778999999999999999999999999999987777999999999999999996 47899989999999
Q ss_pred HH--hhchhHHHHHHHHHHHHHHhhchHH-----HHHHHHHhhccCCCCCChHHHHHHHHHHHhh
Q 008865 113 LL--AAEEIVERDAVHKALMSLLRQDVKA-----SLTALFKHIGSVDEPSTDEFIREKVLSFIRD 170 (550)
Q Consensus 113 LL--qsdd~~E~~~v~~aL~sllk~D~k~-----tLt~lf~qI~~~~e~~~eE~vREr~lkFl~~ 170 (550)
+| .+.++-.+..+=-|+..+++.+|.. .+..+..-+. +.+-.|+.-++..+.+
T Consensus 154 ~l~~~d~~~~VRK~A~~al~kl~~~~p~~~~~~~~~~~l~~lL~-----d~d~~V~~~a~~~l~~ 213 (621)
T 2vgl_A 154 ILVAGDTMDSVKQSAALCLLRLYRTSPDLVPMGDWTSRVVHLLN-----DQHLGVVTAATSLITT 213 (621)
T ss_dssp HHHCSSSCHHHHHHHHHHHHHHHHHCGGGCCCCSCHHHHHHHTT-----CSCHHHHHHHHHHHHH
T ss_pred HHhCCCCCHHHHHHHHHHHHHHHHhChhhcCchhHHHHHHHHhC-----CCCccHHHHHHHHHHH
Confidence 99 7788888888888888888887643 2223333222 2334567777665554
No 45
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=95.83 E-value=0.44 Score=50.58 Aligned_cols=119 Identities=17% Similarity=0.167 Sum_probs=81.0
Q ss_pred CCHHHHHHHhhhhhHHhccCCCcch-----HHHHHhhhhhcccchhHHHHHhhccccccccCcchhhh-----HHHHHHH
Q 008865 43 TSLKAKQLAAQLIPRFFKFFPDLSS-----RAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSK-----IVDILVQ 112 (550)
Q Consensus 43 gs~k~K~LAaQfI~kffk~FP~L~e-----~Ai~a~lDLcEDed~~IR~qaik~Lp~lck~~~e~~~r-----iaDVL~Q 112 (550)
.++..+.-||.-+...-..-|+... -||..++.|..+.+..||.+|+..|-.||.+++++-.. +.+.|++
T Consensus 113 ~~~~lq~~Aa~aL~nias~~~e~~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~ 192 (510)
T 3ul1_B 113 DCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLA 192 (510)
T ss_dssp TCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHH
Confidence 3466777777777776666555433 36778899999999999999999999999998876443 4678999
Q ss_pred HHhhchhHH-----HHHHHHHHHHHHhhc--------hHHHHHHHHHhhccCCCCCChHHHHHHHHH
Q 008865 113 LLAAEEIVE-----RDAVHKALMSLLRQD--------VKASLTALFKHIGSVDEPSTDEFIREKVLS 166 (550)
Q Consensus 113 LLqsdd~~E-----~~~v~~aL~sllk~D--------~k~tLt~lf~qI~~~~e~~~eE~vREr~lk 166 (550)
+|.+.+..+ +..+..+|..+.+.. ..+.+..|...+. ++++.++..+..
T Consensus 193 lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~-----~~~~~v~~~A~~ 254 (510)
T 3ul1_B 193 LLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLH-----HNDPEVLADSCW 254 (510)
T ss_dssp HTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTT-----CSCHHHHHHHHH
T ss_pred HHHhccchhhhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHHh-----cCCHHHHHHHHH
Confidence 998865432 334455555555432 1445555555555 556667665544
No 46
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=95.76 E-value=0.41 Score=50.94 Aligned_cols=118 Identities=12% Similarity=0.177 Sum_probs=88.4
Q ss_pred hhHHHHHHHhc-CCHHHHHHHhhhhhHHhccCCC--c----chHHHHHhhhhhc-ccchhHHHHHhhccccccccCcchh
Q 008865 32 KDYEGIIEAAK-TSLKAKQLAAQLIPRFFKFFPD--L----SSRAVDAHLDLIE-EEELGVRVQAIRGLPLFCKDTPEYL 103 (550)
Q Consensus 32 ~~y~~Il~~~K-gs~k~K~LAaQfI~kffk~FP~--L----~e~Ai~a~lDLcE-Ded~~IR~qaik~Lp~lck~~~e~~ 103 (550)
..+..|+.+.+ ++...+.-|.+.+.|+...=++ . ..-+|..++.+.. ++++.|+..|...|-.||.+++++.
T Consensus 76 ~~l~~lv~~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~ 155 (529)
T 3tpo_A 76 WSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQT 155 (529)
T ss_dssp CCHHHHHHHHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHH
Confidence 35788999999 6667777778888887643322 2 2335667888885 5668899999999999999998876
Q ss_pred hhH-----HHHHHHHHhhchhHHHHHHHHHHHHHHhhchH--------HHHHHHHHhhc
Q 008865 104 SKI-----VDILVQLLAAEEIVERDAVHKALMSLLRQDVK--------ASLTALFKHIG 149 (550)
Q Consensus 104 ~ri-----aDVL~QLLqsdd~~E~~~v~~aL~sllk~D~k--------~tLt~lf~qI~ 149 (550)
..+ ...|++||.+.++.....+-.+|-.|...++. |.+..|...+.
T Consensus 156 ~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~ 214 (529)
T 3tpo_A 156 KAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLA 214 (529)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTC
T ss_pred HHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHh
Confidence 554 56899999999998888888888888765543 34555666665
No 47
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=95.61 E-value=0.019 Score=49.84 Aligned_cols=85 Identities=22% Similarity=0.286 Sum_probs=71.0
Q ss_pred HHHHHHHhc-CCHHHHHHHhhhhhHHhccCCCcchHHHHHhhhhhcccchhHHHHHhhccccccccCcchhhhHHHHHHH
Q 008865 34 YEGIIEAAK-TSLKAKQLAAQLIPRFFKFFPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQ 112 (550)
Q Consensus 34 y~~Il~~~K-gs~k~K~LAaQfI~kffk~FP~L~e~Ai~a~lDLcEDed~~IR~qaik~Lp~lck~~~e~~~riaDVL~Q 112 (550)
...++...+ .++.++..|+.-+.++- ...|+..++.+.+|+|+.||..|+..|-.++. +...+.|.+
T Consensus 44 ~~~L~~~L~d~~~~vR~~A~~aL~~~~------~~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~------~~a~~~L~~ 111 (131)
T 1te4_A 44 FEPLLESLSNEDWRIRGAAAWIIGNFQ------DERAVEPLIKLLEDDSGFVRSGAARSLEQIGG------ERVRAAMEK 111 (131)
T ss_dssp HHHHHHGGGCSCHHHHHHHHHHHGGGC------SHHHHHHHHHHHHHCCTHHHHHHHHHHHHHCS------HHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHhcC------CHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc------HHHHHHHHH
Confidence 567777776 78889999998888764 26899999999999999999999999999973 467889999
Q ss_pred HHhhchhHHHHHHHHHHH
Q 008865 113 LLAAEEIVERDAVHKALM 130 (550)
Q Consensus 113 LLqsdd~~E~~~v~~aL~ 130 (550)
+|.++++..+..+-.+|.
T Consensus 112 ~l~d~~~~vr~~A~~aL~ 129 (131)
T 1te4_A 112 LAETGTGFARKVAVNYLE 129 (131)
T ss_dssp HTTSCCTHHHHHHHHHGG
T ss_pred HHhCCCHHHHHHHHHHHH
Confidence 999888887777776654
No 48
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=95.41 E-value=0.039 Score=55.12 Aligned_cols=139 Identities=14% Similarity=0.209 Sum_probs=99.5
Q ss_pred chHHHHHHHHHhhhhhhccccccChhhHHHHHHHhc-CCHHHHHHHhhhhhHHhccCCCcchHHHHHhhhhhcccchhHH
Q 008865 7 EAKQIEKLYEFGERLNEAKDKSQNVKDYEGIIEAAK-TSLKAKQLAAQLIPRFFKFFPDLSSRAVDAHLDLIEEEELGVR 85 (550)
Q Consensus 7 ~~~~ie~LY~~~~~L~~akd~~~~~~~y~~Il~~~K-gs~k~K~LAaQfI~kffk~FP~L~e~Ai~a~lDLcEDed~~IR 85 (550)
+++-++.|.+..+.+-+ +|.+--.+=|.+|+.... .+...++..++||..=|+.-|++...+++++..|++|+|+.|-
T Consensus 29 ~~~kl~~L~qa~el~~~-~dp~ll~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~k~~l~~~~l~~L~~Ll~d~d~~V~ 107 (257)
T 3gs3_A 29 PSTKCELLAKVQETVLG-SCAELAEEFLESVLSLAHDSNMEVRKQVVAFVEQVCKVKVELLPHVINVVSMLLRDNSAQVI 107 (257)
T ss_dssp HHHHHHHHHHHHHHHTT-TTGGGHHHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHTTCSCHHHH
T ss_pred cHHHHHHHHHHHHHHHc-cCHhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHH
Confidence 36779999998883322 343344566777777554 7788999999999999999999999999999999999999999
Q ss_pred HHHhhccccccccCcchhhhHHHHHHHHHhh-chhHHHHHHHHHHHHHHhhchHHHHHHHHHhhccCCCCCChHHHHHHH
Q 008865 86 VQAIRGLPLFCKDTPEYLSKIVDILVQLLAA-EEIVERDAVHKALMSLLRQDVKASLTALFKHIGSVDEPSTDEFIREKV 164 (550)
Q Consensus 86 ~qaik~Lp~lck~~~e~~~riaDVL~QLLqs-dd~~E~~~v~~aL~sllk~D~k~tLt~lf~qI~~~~e~~~eE~vREr~ 164 (550)
+.||-..-.+.+- ..|.+.. ....+...-.+..++-+|. .+++.+. ++.+.+|-.+
T Consensus 108 K~~I~~~~~iY~~-----------~l~~i~~~~~~~~~~~~~W~~m~~lK~-------~Il~~~~-----s~n~gvkl~~ 164 (257)
T 3gs3_A 108 KRVIQACGSIYKN-----------GLQYLCSLMEPGDSAEQAWNILSLIKA-------QILDMID-----NENDGIRTNA 164 (257)
T ss_dssp HHHHHHHHHHHHH-----------HHHHHTTSSSCCHHHHHHHHHHHHHHH-------HHHHGGG-----SSCHHHHHHH
T ss_pred HHHHHHHHHHHHH-----------HHHHHhcCCCCcchHHHHHHHHHHHHH-------HHHHHHc-----cCCcchHHHH
Confidence 9999877666653 2333333 2223333444555555554 3455544 5668899999
Q ss_pred HHHHh
Q 008865 165 LSFIR 169 (550)
Q Consensus 165 lkFl~ 169 (550)
+||+.
T Consensus 165 iKF~e 169 (257)
T 3gs3_A 165 IKFLE 169 (257)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99865
No 49
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=95.33 E-value=3.3 Score=44.90 Aligned_cols=172 Identities=10% Similarity=0.031 Sum_probs=101.9
Q ss_pred HHHHHHHhc-CCHHHHHHHhhhhhHHhccCCCcc-----hHHHHHhhhhhcccchhHHHHHhhccccccccCcchhhh--
Q 008865 34 YEGIIEAAK-TSLKAKQLAAQLIPRFFKFFPDLS-----SRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSK-- 105 (550)
Q Consensus 34 y~~Il~~~K-gs~k~K~LAaQfI~kffk~FP~L~-----e~Ai~a~lDLcEDed~~IR~qaik~Lp~lck~~~e~~~r-- 105 (550)
...++...+ +++..+..|+..+.....+.++.. ..++..++++..+.++.++..|...|..+|..++++...
T Consensus 100 i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~~i~ 179 (644)
T 2z6h_A 100 IPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIIL 179 (644)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 445555555 678889999998888887765543 467888999999988888888888999999877665433
Q ss_pred ---HHHHHHHHHhhchhHHH-HHHHHHHHHHHhh-c------hHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhhhccc
Q 008865 106 ---IVDILVQLLAAEEIVER-DAVHKALMSLLRQ-D------VKASLTALFKHIGSVDEPSTDEFIREKVLSFIRDKVFP 174 (550)
Q Consensus 106 ---iaDVL~QLLqsdd~~E~-~~v~~aL~sllk~-D------~k~tLt~lf~qI~~~~e~~~eE~vREr~lkFl~~kl~~ 174 (550)
.+..|+++|.+.+...+ ..+-.+|..+-.. + -.+.+..|...+. .++..+|+.++..|..=...
T Consensus 180 ~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~~~~l~~~g~l~~L~~ll~-----~~~~~~~~~a~~~L~nL~~~ 254 (644)
T 2z6h_A 180 ASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLT-----DPSQRLVQNCLWTLRNLSDA 254 (644)
T ss_dssp HTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCTTHHHHHHHTTHHHHHHTTTT-----CSCHHHHHHHHHHHHHHGGG
T ss_pred HcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHh-----cCCHHHHHHHHHHHHHHhhc
Confidence 56789999988654322 2233333332211 0 0245566666665 34566777666655431111
Q ss_pred chhhhcCChHHHHHHHHHHHHhhhcccchHHHHHHHHHHhhc
Q 008865 175 LKAELLKPQEEMERHITDLIKKSLEDVTGAEFRMFMDFLKSL 216 (550)
Q Consensus 175 l~~e~l~~~eE~Ee~i~~~ikKvL~dVt~~EF~l~m~lL~sL 216 (550)
-+ ..+...-++..+-+.|.+-..+-......+|..|
T Consensus 255 ~~------~~~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L 290 (644)
T 2z6h_A 255 AT------KQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNL 290 (644)
T ss_dssp CT------TCCSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred ch------hhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 11 1122234455555566544433333344555555
No 50
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=95.27 E-value=0.037 Score=55.82 Aligned_cols=121 Identities=12% Similarity=0.177 Sum_probs=86.6
Q ss_pred CCHHHHHHHhhhhhHHhccCCCcch-----HHHHHhhh-hhcccchhHHHHHhhccccccccCcchhhh-----HHHHHH
Q 008865 43 TSLKAKQLAAQLIPRFFKFFPDLSS-----RAVDAHLD-LIEEEELGVRVQAIRGLPLFCKDTPEYLSK-----IVDILV 111 (550)
Q Consensus 43 gs~k~K~LAaQfI~kffk~FP~L~e-----~Ai~a~lD-LcEDed~~IR~qaik~Lp~lck~~~e~~~r-----iaDVL~ 111 (550)
++...|..|...+..+-...+ .+. -++..++. |....++.||.+|...|-.++.++|+.-.. +...|+
T Consensus 52 ~~~e~k~~Al~~L~~lv~~~d-na~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll 130 (296)
T 1xqr_A 52 ADQQEREGALELLADLCENMD-NAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLL 130 (296)
T ss_dssp HHHHHHHHHHHHHHHHHTSHH-HHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhChh-hHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHH
Confidence 345677788888877776433 232 36778889 999999999999999999999999876433 557899
Q ss_pred HHHhhc-hhHHHHHHHHHHHHHHhhchH--------HHHHHHHHhhccCCCCCChHHHHHHHHHHHh
Q 008865 112 QLLAAE-EIVERDAVHKALMSLLRQDVK--------ASLTALFKHIGSVDEPSTDEFIREKVLSFIR 169 (550)
Q Consensus 112 QLLqsd-d~~E~~~v~~aL~sllk~D~k--------~tLt~lf~qI~~~~e~~~eE~vREr~lkFl~ 169 (550)
+||.++ ++..+..+-.||..+.+.++. +.+..|...+. +++..++.++...|+
T Consensus 131 ~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~-----~~d~~v~~~A~~aLs 192 (296)
T 1xqr_A 131 RLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQ-----QQVQKLKVKSAFLLQ 192 (296)
T ss_dssp HHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHH-----SSCHHHHHHHHHHHH
T ss_pred HHHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHc-----CCCHHHHHHHHHHHH
Confidence 999976 667778888899998875443 33444555554 455666666554443
No 51
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=95.27 E-value=0.57 Score=48.45 Aligned_cols=102 Identities=17% Similarity=0.235 Sum_probs=60.5
Q ss_pred CCcchHHHHHhhhhhcccchhHHHHHhhccccccccCcch-----hhhHHHHHHHHHhhc-hhHHHHHHHHHHHHHHhhc
Q 008865 63 PDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEY-----LSKIVDILVQLLAAE-EIVERDAVHKALMSLLRQD 136 (550)
Q Consensus 63 P~L~e~Ai~a~lDLcEDed~~IR~qaik~Lp~lck~~~e~-----~~riaDVL~QLLqsd-d~~E~~~v~~aL~sllk~D 136 (550)
|++...++..+..|..++|+.||..|+..|-.+|.+.+.- ...+...|+++|.+. ++..+..+-.+|..+-..+
T Consensus 12 ~~~~~~~i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~~ 91 (529)
T 1jdh_A 12 AELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHR 91 (529)
T ss_dssp -----CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSH
T ss_pred hhhhHhhHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCccHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCc
Confidence 5666677888888888888888888888888888765321 123567778888754 5555555555565543221
Q ss_pred -------hHHHHHHHHHhhccCCCCCChHHHHHHHHHHHh
Q 008865 137 -------VKASLTALFKHIGSVDEPSTDEFIREKVLSFIR 169 (550)
Q Consensus 137 -------~k~tLt~lf~qI~~~~e~~~eE~vREr~lkFl~ 169 (550)
-.+.+..|...+. ++++.++..++..|.
T Consensus 92 ~~~~~i~~~g~i~~L~~lL~-----~~~~~v~~~a~~~L~ 126 (529)
T 1jdh_A 92 EGLLAIFKSGGIPALVKMLG-----SPVDSVLFYAITTLH 126 (529)
T ss_dssp HHHHHHHHTTHHHHHHHHTT-----CSCHHHHHHHHHHHH
T ss_pred hhHHHHHHcCCHHHHHHHHc-----CCCHHHHHHHHHHHH
Confidence 1234555555554 345566666665544
No 52
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=95.19 E-value=0.16 Score=48.17 Aligned_cols=99 Identities=14% Similarity=0.187 Sum_probs=48.8
Q ss_pred HHHHHHhc-CCHHHHHHHhhhhhHHhccCCCcchHHHHHhhhhhcccchhHHHHHhhccccc-cccCc-----chhhhHH
Q 008865 35 EGIIEAAK-TSLKAKQLAAQLIPRFFKFFPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLF-CKDTP-----EYLSKIV 107 (550)
Q Consensus 35 ~~Il~~~K-gs~k~K~LAaQfI~kffk~FP~L~e~Ai~a~lDLcEDed~~IR~qaik~Lp~l-ck~~~-----e~~~ria 107 (550)
..|++..+ .+..++.-|+..+..++...+ -+.-+..++....+.++.||.+++.-|+.+ +..+| .|++.+.
T Consensus 101 p~ll~~l~d~~~~vr~~a~~aL~~~~~~~~--~~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~~~~~l~~l~ 178 (242)
T 2qk2_A 101 PSLLEKFKEKKPNVVTALREAIDAIYASTS--LEAQQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKLLKLLT 178 (242)
T ss_dssp HHHHHGGGCCCHHHHHHHHHHHHHHHTTSC--HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGCCHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCccHHHHHHHH
Confidence 34444444 344455555555555555443 134445555555555555555555555553 22111 2445555
Q ss_pred HHHHHHHhhchhHHHHHHHHHHHHHHhh
Q 008865 108 DILVQLLAAEEIVERDAVHKALMSLLRQ 135 (550)
Q Consensus 108 DVL~QLLqsdd~~E~~~v~~aL~sllk~ 135 (550)
..|+++|...++..+.++..+|..+.+.
T Consensus 179 p~l~~~l~D~~~~VR~~A~~~l~~l~~~ 206 (242)
T 2qk2_A 179 TSLVKTLNEPDPTVRDSSAEALGTLIKL 206 (242)
T ss_dssp HHHHHHHTSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCChHHHHHHHHHHHHHHHH
Confidence 5555555555555555555555555444
No 53
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=95.18 E-value=0.79 Score=47.35 Aligned_cols=170 Identities=10% Similarity=0.024 Sum_probs=104.1
Q ss_pred HHHHHHhc-CCHHHHHHHhhhhhHHhccCCCcc-----hHHHHHhhhhhcccchhHHHHHhhccccccccCcchhhh---
Q 008865 35 EGIIEAAK-TSLKAKQLAAQLIPRFFKFFPDLS-----SRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSK--- 105 (550)
Q Consensus 35 ~~Il~~~K-gs~k~K~LAaQfI~kffk~FP~L~-----e~Ai~a~lDLcEDed~~IR~qaik~Lp~lck~~~e~~~r--- 105 (550)
..++...+ +++..+..|+..+.....+.++.. ..++..++++..+++..+|..+...|-.+|.+++++...
T Consensus 104 ~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~~~~~~i~~ 183 (529)
T 1jdh_A 104 PALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILA 183 (529)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 34455555 678889999999988888776643 467888999999999999999999999999887776443
Q ss_pred --HHHHHHHHHhhchhHHHHH-HHHHHHHHHhhch--------HHHHHHHHHhhccCCCCCChHHHHHHHHHHHhhhccc
Q 008865 106 --IVDILVQLLAAEEIVERDA-VHKALMSLLRQDV--------KASLTALFKHIGSVDEPSTDEFIREKVLSFIRDKVFP 174 (550)
Q Consensus 106 --iaDVL~QLLqsdd~~E~~~-v~~aL~sllk~D~--------k~tLt~lf~qI~~~~e~~~eE~vREr~lkFl~~kl~~ 174 (550)
..+.|+++|.+.++..+.. +-.+|..+- .++ .+.+..|...+. .++..+++.++..|..=...
T Consensus 184 ~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~-~~~~~~~~~~~~g~~~~L~~ll~-----~~~~~~~~~a~~~L~~l~~~ 257 (529)
T 1jdh_A 184 SGGPQALVNIMRTYTYEKLLWTTSRVLKVLS-VCSSNKPAIVEAGGMQALGLHLT-----DPSQRLVQNCLWTLRNLSDA 257 (529)
T ss_dssp TTHHHHHHHHHHHCCCHHHHHHHHHHHHHHT-TSTTHHHHHHHTTHHHHHHTTTT-----SSCHHHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHhCChHHHHHHHHHHHHHHh-cCcccHHHHHHCCCHHHHHHHHh-----CCChHHHHHHHHHHHHHhcC
Confidence 4568999998876544332 233333332 121 245566666554 33566777666655431111
Q ss_pred chhhhcCChHHHHHHHHHHHHhhhcccchHHHHHHHHHHhhc
Q 008865 175 LKAELLKPQEEMERHITDLIKKSLEDVTGAEFRMFMDFLKSL 216 (550)
Q Consensus 175 l~~e~l~~~eE~Ee~i~~~ikKvL~dVt~~EF~l~m~lL~sL 216 (550)
.+. .+....++..+.+.|.+-..+-.......|..|
T Consensus 258 ~~~------~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L 293 (529)
T 1jdh_A 258 ATK------QEGMEGLLGTLVQLLGSDDINVVTCAAGILSNL 293 (529)
T ss_dssp CTT------CSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred Chh------hHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 111 112234455555666554443333445555555
No 54
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=95.10 E-value=0.71 Score=50.20 Aligned_cols=103 Identities=17% Similarity=0.218 Sum_probs=53.4
Q ss_pred CCCcchHHHHHhhhhhcccchhHHHHHhhccccccccCcch-----hhhHHHHHHHHHhhc-hhHHHHHHHHHHHHHHhh
Q 008865 62 FPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEY-----LSKIVDILVQLLAAE-EIVERDAVHKALMSLLRQ 135 (550)
Q Consensus 62 FP~L~e~Ai~a~lDLcEDed~~IR~qaik~Lp~lck~~~e~-----~~riaDVL~QLLqsd-d~~E~~~v~~aL~sllk~ 135 (550)
-+.+...+|..++.|..++|+.||..|.+.|-.+|.+++.- ...+...|+++|.+. ++..+..+-.+|..|-..
T Consensus 8 ~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~ 87 (644)
T 2z6h_A 8 DAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHH 87 (644)
T ss_dssp ----CTTTHHHHHHHHTCSCHHHHHHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTS
T ss_pred hhhhhhchHHHHHHHHcCCCHHHHHHHHHHHHHHHCCChhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcC
Confidence 34455566677777777777777777777777777665321 123456666666653 444444444455543322
Q ss_pred c-------hHHHHHHHHHhhccCCCCCChHHHHHHHHHHHh
Q 008865 136 D-------VKASLTALFKHIGSVDEPSTDEFIREKVLSFIR 169 (550)
Q Consensus 136 D-------~k~tLt~lf~qI~~~~e~~~eE~vREr~lkFl~ 169 (550)
+ -.+.+..|...+. ++++.+|+.++.-|.
T Consensus 88 ~~~~~~i~~~g~i~~Lv~lL~-----~~~~~v~~~A~~aL~ 123 (644)
T 2z6h_A 88 REGLLAIFKSGGIPALVKMLG-----SPVDSVLFYAITTLH 123 (644)
T ss_dssp HHHHHHHHTTTHHHHHHHHTT-----CSSHHHHHHHHHHHH
T ss_pred hhhHHHHHHcCCHHHHHHHHh-----CCCHHHHHHHHHHHH
Confidence 1 1134444444444 334555655554443
No 55
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=95.01 E-value=1.5 Score=49.38 Aligned_cols=129 Identities=13% Similarity=0.062 Sum_probs=91.8
Q ss_pred HHHHHHhc-CCHHHHHHHhhhhhHHhccCCCc-----chHHHHHhhhhhcc-cchhHHHHHhhccccccccCcchhhh--
Q 008865 35 EGIIEAAK-TSLKAKQLAAQLIPRFFKFFPDL-----SSRAVDAHLDLIEE-EELGVRVQAIRGLPLFCKDTPEYLSK-- 105 (550)
Q Consensus 35 ~~Il~~~K-gs~k~K~LAaQfI~kffk~FP~L-----~e~Ai~a~lDLcED-ed~~IR~qaik~Lp~lck~~~e~~~r-- 105 (550)
..++...+ .++.+++-|+..|....++.+.. ...+|..++.+..+ +|+.+|..|.+.|-.++.+. ++...
T Consensus 153 p~Lv~lL~~~d~~vr~~A~~~L~~L~~~~~~~~~i~~~~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~-~~~~~i~ 231 (780)
T 2z6g_A 153 PELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHR-EGLLAIF 231 (780)
T ss_dssp HHHHHHHHCSCHHHHHHHHHHHHHHHTSHHHHHHHTTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSH-HHHHHHH
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHhCCChhHHHHHhccChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCc-hhHHHHH
Confidence 33444333 78899999999999887765432 34688998888764 48999999999999998863 44322
Q ss_pred ---HHHHHHHHHhhchhHHHHHHHHHHHHHHhhch--------HHHHHHHHHhhccCCCCCChHHHHHHHHHHHh
Q 008865 106 ---IVDILVQLLAAEEIVERDAVHKALMSLLRQDV--------KASLTALFKHIGSVDEPSTDEFIREKVLSFIR 169 (550)
Q Consensus 106 ---iaDVL~QLLqsdd~~E~~~v~~aL~sllk~D~--------k~tLt~lf~qI~~~~e~~~eE~vREr~lkFl~ 169 (550)
+..+|+++|+++++..+..+-.+|..|...++ .+.+..|...+. +++..+++.++..|.
T Consensus 232 ~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~~Lv~lL~-----~~~~~v~~~a~~aL~ 301 (780)
T 2z6g_A 232 KSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLN-----KTNVKFLAITTDCLQ 301 (780)
T ss_dssp HTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGG-----CCCHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHcCCHHHHHHHHh-----cCCHHHHHHHHHHHH
Confidence 56789999999988888888888888776532 355666777665 345567766554443
No 56
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=94.50 E-value=1.7 Score=46.20 Aligned_cols=119 Identities=11% Similarity=0.114 Sum_probs=85.1
Q ss_pred HHHHHHhhhhhHHhccCCCc-----chHHHHHhhhhhcccchhHHHHHhhccccccccCcchhhh-----HHHHHHHHHh
Q 008865 46 KAKQLAAQLIPRFFKFFPDL-----SSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSK-----IVDILVQLLA 115 (550)
Q Consensus 46 k~K~LAaQfI~kffk~FP~L-----~e~Ai~a~lDLcEDed~~IR~qaik~Lp~lck~~~e~~~r-----iaDVL~QLLq 115 (550)
...+-|+..+..+...-+.. ...++..+..|+.++|+.|+..|...|..+|...++...- +...|+++|.
T Consensus 224 ~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~ 303 (529)
T 3tpo_A 224 GYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLG 303 (529)
T ss_dssp HHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhc
Confidence 45667777777776644322 2568899999999999999999999999999988766443 5678999999
Q ss_pred hchhHHHHHHHHHHHHHHhhchHHH--------HHHHHHhhccCCCCCChHHHHHHHHHHHh
Q 008865 116 AEEIVERDAVHKALMSLLRQDVKAS--------LTALFKHIGSVDEPSTDEFIREKVLSFIR 169 (550)
Q Consensus 116 sdd~~E~~~v~~aL~sllk~D~k~t--------Lt~lf~qI~~~~e~~~eE~vREr~lkFl~ 169 (550)
+.++.....+-.+|..+...++..+ +..|..-+. +.++.+|+.+.-.|.
T Consensus 304 ~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~-----~~~~~i~~~a~~aL~ 360 (529)
T 3tpo_A 304 ATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLT-----NPKTNIQKEATWTMS 360 (529)
T ss_dssp CSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTT-----CSSHHHHHHHHHHHH
T ss_pred CCChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHc-----CCCHHHHHHHHHHHH
Confidence 9998888888888888876654432 233333333 455667766655444
No 57
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=94.43 E-value=0.1 Score=51.78 Aligned_cols=104 Identities=15% Similarity=0.128 Sum_probs=84.9
Q ss_pred CCHHHHHHHhhhhhHHhc-cCCCcchHHHHHhhhhhcccchhHHHHHhhcccccccc--CcchhhhHHHHHHHHHhhchh
Q 008865 43 TSLKAKQLAAQLIPRFFK-FFPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKD--TPEYLSKIVDILVQLLAAEEI 119 (550)
Q Consensus 43 gs~k~K~LAaQfI~kffk-~FP~L~e~Ai~a~lDLcEDed~~IR~qaik~Lp~lck~--~~e~~~riaDVL~QLLqsdd~ 119 (550)
.+=.+--.+|..+..+.+ ..|+. ++..+..++.|++..||..|+-.+...|+- -+....++..+|..|+.+++.
T Consensus 116 ~~WrVre~lA~a~~~~~~~~~pe~---~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~~~~k~dp~~ll~iL~~L~~D~s~ 192 (240)
T 3l9t_A 116 NNWRVQEVLAKAFDEFCKKIEYKK---ALPIIDEWLKSSNLHTRRAATEGLRIWTNRPYFKENPNEAIRRIADLKEDVSE 192 (240)
T ss_dssp SCHHHHHHHHHHHHHHHHHHCTTT---THHHHHHHHHCSSHHHHHHHHHHTCSGGGSTTTTTCHHHHHHHHHTTTTCSCH
T ss_pred CCccHHHHHHHHHHHHHHhcCHHH---HHHHHHHHhcCCCHHHHHHHHHhhHHHhccchhhcCHHHHHHHHHHhcCChHH
Confidence 555677888999999996 89984 777889999999999999999998777753 112345678888888888888
Q ss_pred HHHHHHHHHHHHHHhhchHHHHHHHHHhhc
Q 008865 120 VERDAVHKALMSLLRQDVKASLTALFKHIG 149 (550)
Q Consensus 120 ~E~~~v~~aL~sllk~D~k~tLt~lf~qI~ 149 (550)
-.+.+|=|+|..+-|.||.-+..-+=.|..
T Consensus 193 yVrKSVan~LrD~SK~~Pd~V~~~~~~w~~ 222 (240)
T 3l9t_A 193 YVRKSVGNALRDISKKFPDLVKIELKNWKL 222 (240)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHHhhhCHHHHHHHHHHhhc
Confidence 999999999999999999988777666643
No 58
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=94.43 E-value=0.81 Score=44.46 Aligned_cols=137 Identities=16% Similarity=0.213 Sum_probs=93.3
Q ss_pred hhHHHHHHHhcCCHHHHHHHhhhhhH-HhccCCCcc------hHHHHHhhhhh-cccchhHHHHHhhccccccccCc--c
Q 008865 32 KDYEGIIEAAKTSLKAKQLAAQLIPR-FFKFFPDLS------SRAVDAHLDLI-EEEELGVRVQAIRGLPLFCKDTP--E 101 (550)
Q Consensus 32 ~~y~~Il~~~Kgs~k~K~LAaQfI~k-ffk~FP~L~------e~Ai~a~lDLc-EDed~~IR~qaik~Lp~lck~~~--e 101 (550)
++|..-|. ...-++++=|..-|.. +...-|++. .+.++++.... .|.++.||..|++.|-.||++-. .
T Consensus 19 ~~f~~~l~--s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~ 96 (249)
T 2qk1_A 19 KDFQERIT--SSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPG 96 (249)
T ss_dssp TTHHHHHT--CSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTT
T ss_pred hhHHHHhh--cCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhccccc
Confidence 35555552 2455666666666777 664444443 46788888888 79999999999999999997553 2
Q ss_pred ----hhhhHHHHHHHHHhhchhHHHHHHHHHHHHHHhhc--------hHHHHHHHHHhhccCCCCCChHHHHHHHHHHHh
Q 008865 102 ----YLSKIVDILVQLLAAEEIVERDAVHKALMSLLRQD--------VKASLTALFKHIGSVDEPSTDEFIREKVLSFIR 169 (550)
Q Consensus 102 ----~~~riaDVL~QLLqsdd~~E~~~v~~aL~sllk~D--------~k~tLt~lf~qI~~~~e~~~eE~vREr~lkFl~ 169 (550)
|+..+.-.|...|..-.+..++++..+|..++..- ....+..|+..+. +..-.+|+.++.||.
T Consensus 97 f~~~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~-----~k~~~vk~~al~~l~ 171 (249)
T 2qk1_A 97 FSKDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMK-----HKTPQIRMECTQLFN 171 (249)
T ss_dssp SCHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTT-----CSSHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHc-----CCChHHHHHHHHHHH
Confidence 33333333444444444678899999999999853 3456677777665 445689999999998
Q ss_pred hhcccc
Q 008865 170 DKVFPL 175 (550)
Q Consensus 170 ~kl~~l 175 (550)
.-+...
T Consensus 172 ~~~~~~ 177 (249)
T 2qk1_A 172 ASMKEE 177 (249)
T ss_dssp HHHHHC
T ss_pred HHHHHc
Confidence 766443
No 59
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=94.12 E-value=1.8 Score=49.57 Aligned_cols=150 Identities=8% Similarity=0.069 Sum_probs=94.4
Q ss_pred CHHHHHHHhhhhhHHhccCC-CcchHHHHHhhhhhcccchhHHHHHhhcccccccc-----------Cc----chhhhHH
Q 008865 44 SLKAKQLAAQLIPRFFKFFP-DLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKD-----------TP----EYLSKIV 107 (550)
Q Consensus 44 s~k~K~LAaQfI~kffk~FP-~L~e~Ai~a~lDLcEDed~~IR~qaik~Lp~lck~-----------~~----e~~~ria 107 (550)
++..+.=|+-+|.+|-..|+ +.-...+.+++....|++..||..|..+|-.||.. .+ .|+..+.
T Consensus 471 ~p~vr~~a~~~lg~~~~~~~~~~l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll 550 (960)
T 1wa5_C 471 HIILRVDAIKYIYTFRNQLTKAQLIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILL 550 (960)
T ss_dssp CHHHHHHHHHHHHHTGGGSCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHH
T ss_pred CceehHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHHH
Confidence 78999999999999998876 45667788888888898899999999999999873 12 3455666
Q ss_pred HHHHHHHhhc-----hhHHHHHHHHHHHHHHhhch---H-------HHHHHHHHhhccCCCCCChHHHHHHHHHHHhhhc
Q 008865 108 DILVQLLAAE-----EIVERDAVHKALMSLLRQDV---K-------ASLTALFKHIGSVDEPSTDEFIREKVLSFIRDKV 172 (550)
Q Consensus 108 DVL~QLLqsd-----d~~E~~~v~~aL~sllk~D~---k-------~tLt~lf~qI~~~~e~~~eE~vREr~lkFl~~kl 172 (550)
..|.++|+.. ...|.+.+-.+|.+++..-. . ..|..++..+.. + .++...+..++.-|..=+
T Consensus 551 ~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p~~~~l~~~L~~~l~~~~~--~-~~~~~~~~~~~e~l~~l~ 627 (960)
T 1wa5_C 551 KNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFPQLLAQFIEIVTIMAK--N-PSNPRFTHYTFESIGAIL 627 (960)
T ss_dssp HHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHHHHHHHHHHHHHHHTT--S-CCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHh--C-CCCcHHHHHHHHHHHHHH
Confidence 6667777764 12255677777777665321 1 122333343321 1 223345555555444322
Q ss_pred ccchhhhcCChHHHHHHHHHHHHhhhc
Q 008865 173 FPLKAELLKPQEEMERHITDLIKKSLE 199 (550)
Q Consensus 173 ~~l~~e~l~~~eE~Ee~i~~~ikKvL~ 199 (550)
....++. ....+..+...+..+|+
T Consensus 628 ~~~~~~~---~~~~~~~~~p~~~~iL~ 651 (960)
T 1wa5_C 628 NYTQRQN---LPLLVDSMMPTFLTVFS 651 (960)
T ss_dssp HTSCGGG---HHHHHHHHHHHHHHHHH
T ss_pred hcCCcch---HHHHHHHHHHHHHHHHH
Confidence 2222222 23567777777777775
No 60
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=94.09 E-value=0.43 Score=46.41 Aligned_cols=136 Identities=15% Similarity=0.170 Sum_probs=97.9
Q ss_pred hhhHHHHHHH----h--cCCHHHHHHHhhhhhHHhccC-----C-CcchHHHHHhhhhhcccchhHHHHHhhcccccccc
Q 008865 31 VKDYEGIIEA----A--KTSLKAKQLAAQLIPRFFKFF-----P-DLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKD 98 (550)
Q Consensus 31 ~~~y~~Il~~----~--Kgs~k~K~LAaQfI~kffk~F-----P-~L~e~Ai~a~lDLcEDed~~IR~qaik~Lp~lck~ 98 (550)
..+|..++++ . +.+..+-..|++.|..+.+.+ . .....-+-++++...|-...||-.|...|-.||..
T Consensus 55 ~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~ 134 (249)
T 2qk1_A 55 SQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKY 134 (249)
T ss_dssp TCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 4455566554 3 367778888988888877655 3 44567788999999999999999999999999986
Q ss_pred Cc-----chhhhHHHHHHHHHhhchhHHHHHHHHHHHHHHhhchH--HHHHHHH--------HhhccCCCCCChHHHHHH
Q 008865 99 TP-----EYLSKIVDILVQLLAAEEIVERDAVHKALMSLLRQDVK--ASLTALF--------KHIGSVDEPSTDEFIREK 163 (550)
Q Consensus 99 ~~-----e~~~riaDVL~QLLqsdd~~E~~~v~~aL~sllk~D~k--~tLt~lf--------~qI~~~~e~~~eE~vREr 163 (550)
.+ -|+..+.+.|...|++..+..+..+-+.|..++...+. ..+...+ .+... ..+..||+.
T Consensus 135 ~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~----D~~~~VR~a 210 (249)
T 2qk1_A 135 YDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVN----DTQPAIRTI 210 (249)
T ss_dssp SCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCSCSHHHHHHHTTTHHHHHHHHHT----CSSHHHHHH
T ss_pred ccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHhc----CCCHHHHHH
Confidence 52 24778999999999999999999999999999977553 2222222 22221 335567777
Q ss_pred HHHHHhh
Q 008865 164 VLSFIRD 170 (550)
Q Consensus 164 ~lkFl~~ 170 (550)
+++.|..
T Consensus 211 A~~~l~~ 217 (249)
T 2qk1_A 211 GFESFAI 217 (249)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7665543
No 61
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=92.68 E-value=7.9 Score=37.77 Aligned_cols=90 Identities=18% Similarity=0.285 Sum_probs=73.6
Q ss_pred hHHHHHhhhhhcccchhHHHHHhhccccccccCcchhhhHHHHHHHHHhhchhHHH-HHHHHHHHHHHhhch---HHHHH
Q 008865 67 SRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQLLAAEEIVER-DAVHKALMSLLRQDV---KASLT 142 (550)
Q Consensus 67 e~Ai~a~lDLcEDed~~IR~qaik~Lp~lck~~~e~~~riaDVL~QLLqsdd~~E~-~~v~~aL~sllk~D~---k~tLt 142 (550)
++-+++++-+.+|+==.||++||.-|..+.+.-|+.+.-..+=|.-||..++..-+ +.+-++|=++-+..| ++++-
T Consensus 31 ~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~epl~~kL~vm~~ksEaIpltqeIa~a~G~la~i~Pe~v~~vVp 110 (253)
T 2db0_A 31 ESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPELVKSMIP 110 (253)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcccCchHHHHHHHHhHHHHhCHHHHHhhHH
Confidence 45688999999999878999999999999999999999999999989888888777 778888888888876 45566
Q ss_pred HHHHhhccCCCCCChHHHH
Q 008865 143 ALFKHIGSVDEPSTDEFIR 161 (550)
Q Consensus 143 ~lf~qI~~~~e~~~eE~vR 161 (550)
.+|-... -|++.+|
T Consensus 111 ~lfanyr-----igd~kik 124 (253)
T 2db0_A 111 VLFANYR-----IGDEKTK 124 (253)
T ss_dssp HHHHHSC-----CCSHHHH
T ss_pred HHHHHHh-----cCCccce
Confidence 6666665 4555544
No 62
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=92.51 E-value=6.2 Score=44.79 Aligned_cols=89 Identities=15% Similarity=0.205 Sum_probs=56.1
Q ss_pred CHHHHHHHhhhhhHHhccC---CCcchHHHHHhhhhhcccchhHHHHHhhccccccccCcchh----hhHHHHHHHHHhh
Q 008865 44 SLKAKQLAAQLIPRFFKFF---PDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYL----SKIVDILVQLLAA 116 (550)
Q Consensus 44 s~k~K~LAaQfI~kffk~F---P~L~e~Ai~a~lDLcEDed~~IR~qaik~Lp~lck~~~e~~----~riaDVL~QLLqs 116 (550)
++.++.=|...|.+|...| |+.-...++.++... | +.|+..|...|-.||++-.+.+ +.+.+.|.++++.
T Consensus 519 ~~~vr~~a~~~l~~~~~~l~~~~~~l~~vl~~l~~~l-~--~~v~~~A~~al~~l~~~~~~~l~p~~~~ll~~l~~~l~~ 595 (971)
T 2x1g_F 519 NVKLLGTALETMGSYCNWLMENPAYIPPAINLLVRGL-N--SSMSAQATLGLKELCRDCQLQLKPYADPLLNACHASLNT 595 (971)
T ss_dssp CHHHHHHHHHHHHHTHHHHC----CHHHHHHHHHHHH-H--SSCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh-C--hHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHcC
Confidence 6777777777777765543 556667777777766 3 6678888888888887654433 3344444555555
Q ss_pred --chhHHHHHHHHHHHHHHhh
Q 008865 117 --EEIVERDAVHKALMSLLRQ 135 (550)
Q Consensus 117 --dd~~E~~~v~~aL~sllk~ 135 (550)
-+..+...+-.++..++..
T Consensus 596 ~~~~~~~~~~~~~ai~~i~~~ 616 (971)
T 2x1g_F 596 GRMKNSDSVRLMFSIGKLMSL 616 (971)
T ss_dssp TTSCHHHHHHHHHHHHHHHHT
T ss_pred CCCChHHHHHHHHHHHHHHHh
Confidence 2356677777777776653
No 63
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=91.41 E-value=6.3 Score=45.51 Aligned_cols=81 Identities=14% Similarity=0.121 Sum_probs=62.5
Q ss_pred HHhccCCCcchHHHHHhhhhhcccchhHHHHHhhccccccccCcch------------hhhHHHHHHHHHhhchhHHHHH
Q 008865 57 RFFKFFPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEY------------LSKIVDILVQLLAAEEIVERDA 124 (550)
Q Consensus 57 kffk~FP~L~e~Ai~a~lDLcEDed~~IR~qaik~Lp~lck~~~e~------------~~riaDVL~QLLqsdd~~E~~~ 124 (550)
+||+.-|+.-..+++.+++...|.++.||..|...|-.||++.+.+ +..+.+.|.+++..-+..+...
T Consensus 529 ~~~~~~~~~l~~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~~~~l~~~~~~~~~p~~~~il~~l~~~~~~~~~~~~~~ 608 (1049)
T 3m1i_C 529 RFLKAHWNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHT 608 (1049)
T ss_dssp HHHHHCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHhCCHHHHHH
Confidence 4566667888889999999999989999999999999999875533 4455555566677666677778
Q ss_pred HHHHHHHHHhhch
Q 008865 125 VHKALMSLLRQDV 137 (550)
Q Consensus 125 v~~aL~sllk~D~ 137 (550)
+-.|+..++..-+
T Consensus 609 ~~eai~~ii~~~~ 621 (1049)
T 3m1i_C 609 FYKACGIIISEER 621 (1049)
T ss_dssp HHHHHHHHHHTCC
T ss_pred HHHHHHHHHHcCC
Confidence 8888888876644
No 64
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=91.16 E-value=16 Score=41.19 Aligned_cols=138 Identities=11% Similarity=0.077 Sum_probs=68.3
Q ss_pred CChhhHHHHHHHHHHhhhhhccCCCchhH-HHHHHhhhcccCCCCChhhhhhHHHHHHHhCCCCC-chhh----hhhhHH
Q 008865 248 SDADHIDRLISCLYMALPFFLRGASGSKF-LNYLNKHIIPVFDKLPEERKLDLLKALAEISPYTT-PQDS----RQILPS 321 (550)
Q Consensus 248 sD~d~idRli~cl~~Alp~fs~~v~st~f-~~y~~~~IlP~l~~L~~~~kl~lLK~lAE~s~~~~-~~~a----~~~l~~ 321 (550)
.+||...-+..++...+..+...+-+++. +..+...++-.+..-..+..--.++.+.++..++. .... ...++.
T Consensus 785 ~~pd~~~~~f~ll~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~ 864 (963)
T 2x19_B 785 DHPDIVDSFMQLLAQALKRKPDLFLCERLDVKAVFQCAVLALKFPEAPTVKASCGFFTELLPRCGEVESVGKVVQEDGRM 864 (963)
T ss_dssp TCHHHHHHHHHHHHHHHHHCGGGGGCTTSCHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHGGGTTSSCHHHHHTTTSHHH
T ss_pred cCchHHHHHHHHHHHHHHhCcHHHcCCcccHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHH
Confidence 35777777777777766555443333343 55555555555542222333334455555544443 2112 234555
Q ss_pred HHHHHHhhCCCCCCCCCccchHHHHHHHHHHHHhhhcCchhhhhccCcccc--cCCCCCccCcChhhhHHHHHHHH
Q 008865 322 VAVLLKKYMPLRKTGGEEMNFTYVECLLYTFHHLAHKAPNATNSLCGYKIV--TGQPSDRLGEDFSDCYKDFTERL 395 (550)
Q Consensus 322 i~~~L~~~mP~~~~~~~~l~fS~vEcLL~afh~L~~k~p~~l~~~cg~k~~--Tgqpsd~lgeD~~~~~kdFr~RL 395 (550)
+...++..+-. +.+...|..+=-+|+ .|..++|+++...+. ..+ .+-|+..+. ++-...|...|
T Consensus 865 l~~~l~~~l~~---~~~~~~~~~~~~il~---~l~~~~~~~~~~~l~-~~l~~~~~p~~~~~---~~~~~~f~~~l 930 (963)
T 2x19_B 865 LLIAVLEAIGG---QASRSLMDCFADILF---ALNKHCFSLLSMWIK-EALQPPGFPSARLS---PEQKDTFSQQI 930 (963)
T ss_dssp HHHHHHHHHTT---TSCGGGHHHHHHHHH---HHHHHSHHHHHHHHH-HHTCSTTSSCTTCC---HHHHHHHHHHH
T ss_pred HHHHHHHHhcc---cCChhHHHHHHHHHH---HHHHHChHHHHHHHH-HHhcccCCCCCcCC---HHHHHHHHHHH
Confidence 55555544421 235566754333333 566778876654332 122 255554444 34445555554
No 65
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=90.94 E-value=1.5 Score=46.12 Aligned_cols=140 Identities=17% Similarity=0.211 Sum_probs=102.1
Q ss_pred chHHHHHHHHHhhhhhhccccccChhhHHHHHHHhc-CCHHHHHHHhhhhhHHhccCCCcchHHHHHhhhhhcccchhHH
Q 008865 7 EAKQIEKLYEFGERLNEAKDKSQNVKDYEGIIEAAK-TSLKAKQLAAQLIPRFFKFFPDLSSRAVDAHLDLIEEEELGVR 85 (550)
Q Consensus 7 ~~~~ie~LY~~~~~L~~akd~~~~~~~y~~Il~~~K-gs~k~K~LAaQfI~kffk~FP~L~e~Ai~a~lDLcEDed~~IR 85 (550)
+++-|+.|.+..+.+-. +|.+--.+-|..||.... .+...++..+.||..=|+.-+++...+++++..|++|+|+.|-
T Consensus 39 ~~~Kl~~L~q~~EL~l~-~dpsLl~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~~~el~~~~l~~L~~LL~d~d~~V~ 117 (386)
T 3o2t_A 39 NDSKITVLKQVQELIIN-KDPTLLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKRDIELLLKLIANLNMLLRDENVNVV 117 (386)
T ss_dssp STHHHHHHHHHHHHHHT-TCGGGGGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTCSSHHHH
T ss_pred hHHHHHHHHHHHHHHhc-cCHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHH
Confidence 35678888888885433 455566778899998666 7899999999999999999999999999999999999999999
Q ss_pred HHHhhccccccccCcchhhhHHHHHHHHHhhchh-HHHHHHHHHHHHHHhhchHHHHHHHHHhhccCCCCCChHHHHHHH
Q 008865 86 VQAIRGLPLFCKDTPEYLSKIVDILVQLLAAEEI-VERDAVHKALMSLLRQDVKASLTALFKHIGSVDEPSTDEFIREKV 164 (550)
Q Consensus 86 ~qaik~Lp~lck~~~e~~~riaDVL~QLLqsdd~-~E~~~v~~aL~sllk~D~k~tLt~lf~qI~~~~e~~~eE~vREr~ 164 (550)
+.+|-..-.+.+ +..|.+..... .+..--.+..++-+|. .+++.+. ++.+.+|-.+
T Consensus 118 K~~I~~~tslYp-----------l~f~~i~~~~~~~~~~e~~W~~m~~lK~-------~Il~~~d-----s~n~GVrl~a 174 (386)
T 3o2t_A 118 KKAILTMTQLYK-----------VALQWMVKSRVISELQEACWDMVSAMAG-------DIILLLD-----SDNDGIRTHA 174 (386)
T ss_dssp HHHHHHHHHHHH-----------HHHHHHHHC-CCCHHHHHHHHHHHHHHH-------HHHHGGG-----CSSHHHHHHH
T ss_pred HHHHHHHHHHHH-----------HHHHHHhcCCCcchhHHHHHHHHHHHHH-------HHHHHhc-----cCCcchHHHH
Confidence 999887766543 23333333322 2222333444555554 3455444 5678899999
Q ss_pred HHHHhh
Q 008865 165 LSFIRD 170 (550)
Q Consensus 165 lkFl~~ 170 (550)
+||+..
T Consensus 175 iKFle~ 180 (386)
T 3o2t_A 175 IKFVEG 180 (386)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999873
No 66
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=90.48 E-value=0.94 Score=47.12 Aligned_cols=94 Identities=12% Similarity=0.061 Sum_probs=75.6
Q ss_pred CCHHHHHHHhhhhhHHhccCCCcchHHHHHhhhhhcccchhHHHHHhhccccccccCcchhhhHHHHHHHHHhhchhHHH
Q 008865 43 TSLKAKQLAAQLIPRFFKFFPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQLLAAEEIVER 122 (550)
Q Consensus 43 gs~k~K~LAaQfI~kffk~FP~L~e~Ai~a~lDLcEDed~~IR~qaik~Lp~lck~~~e~~~riaDVL~QLLqsdd~~E~ 122 (550)
.+...|||.=-.|--|.+. |+..=-|+|++..=|.|.++-||--|||.|..|+-. +.+.-+..-+-|.|++.+|-.+
T Consensus 80 ~d~~lKrLvYLyl~~~~~~-~~e~iLv~Nsl~kDl~~~N~~iR~lALRtL~~I~~~--~m~~~l~~~lk~~L~d~~pyVR 156 (355)
T 3tjz_B 80 NDPTLRRMCYLTIKEMSCI-AEDVIIVTSSLTKDMTGKEDSYRGPAVRALCQITDS--TMLQAIERYMKQAIVDKVPSVS 156 (355)
T ss_dssp CCHHHHHHHHHHHHHHTTT-SSCGGGGHHHHHHHHHSSCHHHHHHHHHHHHHHCCT--TTHHHHHHHHHHHHTCSSHHHH
T ss_pred CCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHhhcCCCcHhHHHHHHHHHhcCCCH--HHHHHHHHHHHHHcCCCCHHHH
Confidence 6777899888888777776 777778889988888888888999999999988764 7788888889999999888877
Q ss_pred HHHHHHHHHHHhhchHH
Q 008865 123 DAVHKALMSLLRQDVKA 139 (550)
Q Consensus 123 ~~v~~aL~sllk~D~k~ 139 (550)
..+==+..-|+..+|..
T Consensus 157 k~A~l~~~kL~~~~pe~ 173 (355)
T 3tjz_B 157 SSALVSSLHLLKCSFDV 173 (355)
T ss_dssp HHHHHHHHHHTTTCHHH
T ss_pred HHHHHHHHHHhccCHHH
Confidence 76666666666666653
No 67
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=90.43 E-value=28 Score=40.48 Aligned_cols=267 Identities=13% Similarity=0.113 Sum_probs=135.0
Q ss_pred cCCHHHHHHHhhhhhHHhccC---CCcchHHHHHhhh--hhcccchhHHHHHhhccccccccCcchhhhHHHHHHHH---
Q 008865 42 KTSLKAKQLAAQLIPRFFKFF---PDLSSRAVDAHLD--LIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQL--- 113 (550)
Q Consensus 42 Kgs~k~K~LAaQfI~kffk~F---P~L~e~Ai~a~lD--LcEDed~~IR~qaik~Lp~lck~~~e~~~riaDVL~QL--- 113 (550)
-.++.+...+...|.||.+.| |++-..+++.+++ -..+.+..||..|-..+-.||++.+.++.--++-+.|-
T Consensus 506 ~~hp~V~~~~~~~l~rys~~~~~~~~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~~~L~~~~~~il~~l~~ 585 (980)
T 3ibv_A 506 HPHPLVQLLYMEILVRYASFFDYESAAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIKKQVVNYTESSLAMLGD 585 (980)
T ss_dssp CCCHHHHHHHHHHHHHTGGGGGTCCTTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTTTTCSSSHHHHHHHTTG
T ss_pred CCCHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHHhhHHhhhHHHHHHHHHHH
Confidence 477999999999999977766 7888899999999 88889899999999999999999887765433333333
Q ss_pred -Hhh--c--hhHH------HHHHHHH-HH-HHHhhchHHHHHHHHHhhccCCCCCChHH--HHHHHHHHHhhhcccchhh
Q 008865 114 -LAA--E--EIVE------RDAVHKA-LM-SLLRQDVKASLTALFKHIGSVDEPSTDEF--IREKVLSFIRDKVFPLKAE 178 (550)
Q Consensus 114 -Lqs--d--d~~E------~~~v~~a-L~-sllk~D~k~tLt~lf~qI~~~~e~~~eE~--vREr~lkFl~~kl~~l~~e 178 (550)
|+. + +..| -+++.++ .. +++=.+.-|+|-+ ... .| .++. .=+.++..+..++..+-..
T Consensus 586 lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~ql~L~eaig~li~---~~~---~~-~e~~~~~l~~ll~pl~~~l~~~l~~ 658 (980)
T 3ibv_A 586 LLNISVSPVTDMDAPVPTLNSSIRNSDFNSQLYLFETVGVLIS---SGN---LT-PEEQALYCDSLINALIGKANAALSS 658 (980)
T ss_dssp GGCCCCCCCCC--CSSCCHHHHHHTTTHHHHHHHHHHHHHHHH---HSC---CC-HHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hhcCcCCCCCcccccccchhhhcccCCchHHHHHHHHHHHHHh---CCC---CC-HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 341 1 1011 1222221 11 1222233333332 221 01 1121 1234444444444322111
Q ss_pred hcCChHHHHHHHHHHHHhhhcccchHHHHHHHHHHhhccccCCCCch--hHHHHHHHHHHHhhcccccCCCCChhhHHHH
Q 008865 179 LLKPQEEMERHITDLIKKSLEDVTGAEFRMFMDFLKSLSLFGEKAPT--ERMKELIGIIEGQADLDAQFNVSDADHIDRL 256 (550)
Q Consensus 179 ~l~~~eE~Ee~i~~~ikKvL~dVt~~EF~l~m~lL~sL~~~~~~~~~--gr~qeLv~~i~eqa~Ld~~f~~sD~d~idRl 256 (550)
.. .+.+ +.+ .+-..+ -.+-.+.+.++....+.++ .-.++.++.+..- |+ .| .++....++.
T Consensus 659 ~~-~~~~--~~~--~i~~~i--------~al~~lakgf~~~~~~~~p~~~~f~~~~~~il~~--l~-~~-~~~~~irea~ 721 (980)
T 3ibv_A 659 DL-SALE--NII--SVYCSL--------MAIGNFAKGFPARGSEEVAWLASFNKASDEIFLI--LD-RM-GFNEDIRGAV 721 (980)
T ss_dssp SC-C--C--HHH--HHHHHH--------HHHHHHHHTSCSCC-CCCSHHHHHHHHHHHHHHH--HH-HS-CCSHHHHHHH
T ss_pred cc-cCcc--HHH--HHHHHH--------HHHHHHhccCCcccCCCCcHHHHHHHHHHHHHHH--HH-hc-CCcHHHHHHH
Confidence 00 0100 000 110100 0112233333333222111 1122333333211 11 13 2566777999
Q ss_pred HHHHHHhhhhhccCCCchhHHHHHHhhhcccCCCCChhhhhhHHHHHHHhCC-CCCc--hhhhhhhHHHHHHHHhhCCCC
Q 008865 257 ISCLYMALPFFLRGASGSKFLNYLNKHIIPVFDKLPEERKLDLLKALAEISP-YTTP--QDSRQILPSVAVLLKKYMPLR 333 (550)
Q Consensus 257 i~cl~~Alp~fs~~v~st~f~~y~~~~IlP~l~~L~~~~kl~lLK~lAE~s~-~~~~--~~a~~~l~~i~~~L~~~mP~~ 333 (550)
..|++++++.+... ..+++.=+++.++..++ ...-.++|..+.++.. |-+. .--.++++++.+.+...+..+
T Consensus 722 ~~~~~r~i~~lg~~--~~p~lp~~i~~ll~~~~---~~e~~~fL~l~~qli~~f~~~~~~~l~~ll~~l~~~if~~l~~~ 796 (980)
T 3ibv_A 722 RFTSGRIINVVGPD--MLPKVPQLISILLNSID---MNELVDVLSFISQLIHIYKDNMMEITNRMLPTLLMRIFSSLSAA 796 (980)
T ss_dssp HHHHHHHTTTTHHH--HTTTHHHHHHHHHHHCC---TTTHHHHHHHHHHHHHHTTTTSHHHHHHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHccHh--HHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 99999999988443 56777777777775444 2223344555544433 2221 124567788888888888876
Q ss_pred CCCC
Q 008865 334 KTGG 337 (550)
Q Consensus 334 ~~~~ 337 (550)
+++.
T Consensus 797 ~~~t 800 (980)
T 3ibv_A 797 PQGT 800 (980)
T ss_dssp ---C
T ss_pred CCCc
Confidence 6533
No 68
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=89.94 E-value=12 Score=43.51 Aligned_cols=280 Identities=16% Similarity=0.201 Sum_probs=130.1
Q ss_pred HHHHhhhhhhcccc-ccChhhH------------HHHHHHhc-C-CHHHHHHHhhhh---hHHhccCCCcch--------
Q 008865 14 LYEFGERLNEAKDK-SQNVKDY------------EGIIEAAK-T-SLKAKQLAAQLI---PRFFKFFPDLSS-------- 67 (550)
Q Consensus 14 LY~~~~~L~~akd~-~~~~~~y------------~~Il~~~K-g-s~k~K~LAaQfI---~kffk~FP~L~e-------- 67 (550)
||+.-|.|-.+-.. .+....| ...+...+ + .... .+.+.| ..+.|-|++...
T Consensus 619 L~eaig~li~~~~~~~e~~~~~l~~ll~pl~~~l~~~l~~~~~~~~~~~--~i~~~i~al~~lakgf~~~~~~~~p~~~~ 696 (980)
T 3ibv_A 619 LFETVGVLISSGNLTPEEQALYCDSLINALIGKANAALSSDLSALENII--SVYCSLMAIGNFAKGFPARGSEEVAWLAS 696 (980)
T ss_dssp HHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHTTSCC--CHHH--HHHHHHHHHHHHHHTSCSCC-CCCSHHHH
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccCccHHH--HHHHHHHHHHHHhccCCcccCCCCcHHHH
Confidence 89999999877543 2222222 22222223 2 2222 222333 666667766432
Q ss_pred --HHHHHhhhhhc--ccchhHHHHHhhc----cccccccCcchhhhHHHHHHHHHhhchhHHHHHHHHHHHHHHhhchHH
Q 008865 68 --RAVDAHLDLIE--EEELGVRVQAIRG----LPLFCKDTPEYLSKIVDILVQLLAAEEIVERDAVHKALMSLLRQDVKA 139 (550)
Q Consensus 68 --~Ai~a~lDLcE--Ded~~IR~qaik~----Lp~lck~~~e~~~riaDVL~QLLqsdd~~E~~~v~~aL~sllk~D~k~ 139 (550)
+++.+++..++ -.+..||=.+.+. ++.+-.+---+++++++.|++-+...+-.+.-..-+-|+.-|+.+-..
T Consensus 697 f~~~~~~il~~l~~~~~~~~irea~~~~~~r~i~~lg~~~~p~lp~~i~~ll~~~~~~e~~~fL~l~~qli~~f~~~~~~ 776 (980)
T 3ibv_A 697 FNKASDEIFLILDRMGFNEDIRGAVRFTSGRIINVVGPDMLPKVPQLISILLNSIDMNELVDVLSFISQLIHIYKDNMME 776 (980)
T ss_dssp HHHHHHHHHHHHHHSCCSHHHHHHHHHHHHHHTTTTHHHHTTTHHHHHHHHHHHCCTTTHHHHHHHHHHHHHHTTTTSHH
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67777777777 5666777655443 344444444567888888777666777788888888888888888766
Q ss_pred HHHHHHHhhccC------CCCCChHHH------HHHHHHHHhhhccc-chhhhcCChHHHHHHHHHHHHhhh------cc
Q 008865 140 SLTALFKHIGSV------DEPSTDEFI------REKVLSFIRDKVFP-LKAELLKPQEEMERHITDLIKKSL------ED 200 (550)
Q Consensus 140 tLt~lf~qI~~~------~e~~~eE~v------REr~lkFl~~kl~~-l~~e~l~~~eE~Ee~i~~~ikKvL------~d 200 (550)
.|..+|.-+... .++.++|.. |+--+.||..-+.. +.+-++ ++....++-..+..++ .|
T Consensus 777 ~l~~ll~~l~~~if~~l~~~~~~td~~r~~~~l~r~~~~fl~~i~~~~~~~v~~--s~~n~~~l~~~l~~l~~~a~~~~d 854 (980)
T 3ibv_A 777 ITNRMLPTLLMRIFSSLSAAPQGTDDAVKQNDLRKSYISFILQLLNKGFGSILF--TEENQVYFDPLINSILHFANLVGE 854 (980)
T ss_dssp HHHHHHHHHHHHHHHHTTC----CCHHHHHHHHHHHHHHHHHHHHHTTCTGGGG--SHHHHTTHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCchhhhc--CCcchHHHHHHHHHHHHHhccCCC
Confidence 666555543321 222333333 44445677765542 333333 2222222222222222 22
Q ss_pred cchHHHHHHHHHHhh-ccccCCCC-chhHHHHHHHHHHHh---hcccccCCCCChhhHHHHHHHHHHhhhhhccCCCchh
Q 008865 201 VTGAEFRMFMDFLKS-LSLFGEKA-PTERMKELIGIIEGQ---ADLDAQFNVSDADHIDRLISCLYMALPFFLRGASGSK 275 (550)
Q Consensus 201 Vt~~EF~l~m~lL~s-L~~~~~~~-~~gr~qeLv~~i~eq---a~Ld~~f~~sD~d~idRli~cl~~Alp~fs~~v~st~ 275 (550)
.+..- +-+.+|.. .+.++... .+|=.+=+++ +.-- +=++..||.+|..+.==+-++...-.-++.+. +..
T Consensus 855 ~~~~K--~a~~~l~~~v~~~~~~~~~~gf~~f~~~-~~~~~f~~p~~~~f~~~Daq~~~~~~e~~~~~k~~~~~~--g~~ 929 (980)
T 3ibv_A 855 PATQK--SSIALVSKMVSLWGGKDGIAGFENFTLS-LTPLCFEMPVNPNFNTRDGQSLVVLGELAGLQKIILEKL--GDI 929 (980)
T ss_dssp CHHHH--HHHHHHHHHHHC-------CCHHHHHHH-HHHHHHHGGGC----------CHHHHHHHHHHHHHHHHH--HHH
T ss_pred hHHHH--HHHHHHHHHHHHHCCCCcchHHHHHHHH-HHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHHHHHHhc--CHH
Confidence 22211 11222222 12222111 2221122445 3322 22778899999875522222222222222222 468
Q ss_pred HHHHHHhhhcccCCCCChhhhhhHHHHH
Q 008865 276 FLNYLNKHIIPVFDKLPEERKLDLLKAL 303 (550)
Q Consensus 276 f~~y~~~~IlP~l~~L~~~~kl~lLK~l 303 (550)
|++|+-+..+|.++ +|++.-.++.+.|
T Consensus 930 ~~~~l~~~~lp~~~-~~~~~~~~~~~~l 956 (980)
T 3ibv_A 930 YKSYLVTVYFPTVN-FPDVMASEYLQAL 956 (980)
T ss_dssp HHHHHHHTTTTC-----CCHHHHHHHC-
T ss_pred HHHHHHHhcCCcCC-CCHHHHHHHHHHH
Confidence 99999999999876 6666555666555
No 69
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=89.89 E-value=0.71 Score=48.43 Aligned_cols=106 Identities=16% Similarity=0.108 Sum_probs=82.5
Q ss_pred CCHHHHHHHhhhhhHHhccCCCcc-----hHHHHHhhhhhcccchhHHHHHhhccccccccCcchhhhH-----HHHHHH
Q 008865 43 TSLKAKQLAAQLIPRFFKFFPDLS-----SRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKI-----VDILVQ 112 (550)
Q Consensus 43 gs~k~K~LAaQfI~kffk~FP~L~-----e~Ai~a~lDLcEDed~~IR~qaik~Lp~lck~~~e~~~ri-----aDVL~Q 112 (550)
+++..+.-|+..|.+.-.+-|... .-+|..++.|...+++.++..|...|-.++.+++++...| ...|++
T Consensus 14 ~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i~~~G~i~~Lv~ 93 (457)
T 1xm9_A 14 QDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETRRQNGIREAVS 93 (457)
T ss_dssp SCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHH
Confidence 778899999999999877667655 4567889999999999999999999999999888886666 568999
Q ss_pred HHh-hchhHHHHHHHHHHHHHHhhc-hH-----HHHHHHHHhh
Q 008865 113 LLA-AEEIVERDAVHKALMSLLRQD-VK-----ASLTALFKHI 148 (550)
Q Consensus 113 LLq-sdd~~E~~~v~~aL~sllk~D-~k-----~tLt~lf~qI 148 (550)
||. +.++.....+-.+|-.|-..+ .+ +.+..|...+
T Consensus 94 lL~~~~~~~~~~~a~~aL~nLa~~~~~~~~i~~g~i~~Lv~ll 136 (457)
T 1xm9_A 94 LLRRTGNAEIQKQLTGLLWNLSSTDELKEELIADALPVLADRV 136 (457)
T ss_dssp HHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHHHHHHHHHHHT
T ss_pred HHhhCCCHHHHHHHHHHHHHHhcCHHhHHHHHhccHHHHHHHH
Confidence 999 777777777777776665431 11 4555555555
No 70
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=89.59 E-value=3.9 Score=40.90 Aligned_cols=162 Identities=18% Similarity=0.234 Sum_probs=118.0
Q ss_pred HHHHHHHhhhhhhccccc---cChhhHHHHHHHhc-CCHHHHHHHhhhhhHHhccCC---CcchHHHHHhhhhhcccchh
Q 008865 11 IEKLYEFGERLNEAKDKS---QNVKDYEGIIEAAK-TSLKAKQLAAQLIPRFFKFFP---DLSSRAVDAHLDLIEEEELG 83 (550)
Q Consensus 11 ie~LY~~~~~L~~akd~~---~~~~~y~~Il~~~K-gs~k~K~LAaQfI~kffk~FP---~L~e~Ai~a~lDLcEDed~~ 83 (550)
+..||=..+.|..+.+.- .-++-+-.|+...| .+.++..=|...|..--..=| +.=...++|+.|+..+.+.-
T Consensus 51 ~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~~y~Kl~~aL~dlik~~~~i 130 (265)
T 3b2a_A 51 LRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSKTFLKAAKTLVSLLESPDDM 130 (265)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHHHHTTSCCHH
T ss_pred HHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhcCCCch
Confidence 667787888887765431 45556677777888 778888888888887777665 33356889999999999999
Q ss_pred HHHHHhhccccccccCcchhhhHHHHHHHHHhhchhHHHHHHHHHHHHHHhhc-----hHHHHHHHHHhhccCCCCCChH
Q 008865 84 VRVQAIRGLPLFCKDTPEYLSKIVDILVQLLAAEEIVERDAVHKALMSLLRQD-----VKASLTALFKHIGSVDEPSTDE 158 (550)
Q Consensus 84 IR~qaik~Lp~lck~~~e~~~riaDVL~QLLqsdd~~E~~~v~~aL~sllk~D-----~k~tLt~lf~qI~~~~e~~~eE 158 (550)
+|..|.-.|-.+-.- ...++|.|+|.-|+.|.+..+-.+.=.+|.++-..- .+..+.++=.-+. ++|+
T Consensus 131 l~~eaae~Lgklkv~--~~~~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~D~~i~~~I~~eI~elL~-----~eD~ 203 (265)
T 3b2a_A 131 MRIETIDVLSKLQPL--EDSKLVRTYINELVVSPDLYTKVAGFCLFLNMLNSSADSGHLTLILDEIPSLLQ-----NDNE 203 (265)
T ss_dssp HHHHHHHHHHHCCBS--CCCHHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCSSCCCGGGTTTTHHHHHT-----CSCH
T ss_pred HHHHHHHHhCcCCcc--cchHHHHHHHHHHHhCCChhHHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHc-----CCCH
Confidence 999999998888322 347889999999999999988888888887777642 3444444444443 5678
Q ss_pred HHHHHHHHHHhhhc-ccchhhh
Q 008865 159 FIREKVLSFIRDKV-FPLKAEL 179 (550)
Q Consensus 159 ~vREr~lkFl~~kl-~~l~~e~ 179 (550)
.++|++|.-+-.-+ .+++.++
T Consensus 204 ~l~e~aLd~Le~ils~pi~~~~ 225 (265)
T 3b2a_A 204 FIVELALDVLEKALSFPLLENV 225 (265)
T ss_dssp HHHHHHHHHHHHHTTSCCCSCC
T ss_pred HHHHHHHHHHHHHHcCcccHhH
Confidence 89999997655433 3444433
No 71
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=89.51 E-value=1.2 Score=50.82 Aligned_cols=96 Identities=15% Similarity=0.188 Sum_probs=72.1
Q ss_pred HHHHHhhhhhcccchhHHHHHhhccccccccCcchh---------hh---HHHHHHHHHhhchhHHHHHHHHHHHHHHhh
Q 008865 68 RAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYL---------SK---IVDILVQLLAAEEIVERDAVHKALMSLLRQ 135 (550)
Q Consensus 68 ~Ai~a~lDLcEDed~~IR~qaik~Lp~lck~~~e~~---------~r---iaDVL~QLLqsdd~~E~~~v~~aL~sllk~ 135 (550)
.|+.++.+|+.++...||+.|..-|-.++. +|+-+ ++ ..++|++|+.++|...+.++-.+|..+-..
T Consensus 606 ga~~~L~~LL~s~n~~VrrAA~elI~NL~~-~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~ 684 (778)
T 3opb_A 606 VYWSTIENLMLDENVPLQRSTLELISNMMS-HPLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATT 684 (778)
T ss_dssp HHHHHHHHGGGCSSHHHHHHHHHHHHHHHT-SGGGTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCHHHHHHHHHHHHHHhC-CcHHHHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCC
Confidence 578889999999999999999888888886 44432 12 256999999999999999999999998766
Q ss_pred chHH------------HHHHHHHhhccCCCCCChHHHHHHHHHHHhh
Q 008865 136 DVKA------------SLTALFKHIGSVDEPSTDEFIREKVLSFIRD 170 (550)
Q Consensus 136 D~k~------------tLt~lf~qI~~~~e~~~eE~vREr~lkFl~~ 170 (550)
+|.. .|-++|..+ .+++.+|.|.+.++..
T Consensus 685 ~~~ia~~ll~~~~gi~~Ll~lL~~~------~~~~~l~~R~~~~l~N 725 (778)
T 3opb_A 685 IPLIAKELLTKKELIENAIQVFADQ------IDDIELRQRLLMLFFG 725 (778)
T ss_dssp CHHHHHHHTTCHHHHHHHHHHHHHT------TTCHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHccccHHHHHHHHhcc------CCCHHHHHHHHHHHHH
Confidence 6542 333344432 3577788888877765
No 72
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=88.33 E-value=37 Score=38.15 Aligned_cols=91 Identities=14% Similarity=0.192 Sum_probs=57.8
Q ss_pred CCHHHHHHHhhhhhHHhccC---CCcchHHHHHhhhhhcccchhHHHHHhhccccccccCcch----hhhHHHHHHHHHh
Q 008865 43 TSLKAKQLAAQLIPRFFKFF---PDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEY----LSKIVDILVQLLA 115 (550)
Q Consensus 43 gs~k~K~LAaQfI~kffk~F---P~L~e~Ai~a~lDLcEDed~~IR~qaik~Lp~lck~~~e~----~~riaDVL~QLLq 115 (550)
+++..+.=+..+|.+|...+ |+.-...++.++....| +.||..|...|-.||++-++. ++.+.+.|.++++
T Consensus 501 ~~~~vr~~~~~~l~~~~~~l~~~~~~l~~vl~~l~~~l~~--~~V~~~A~~al~~l~~~~~~~l~p~~~~il~~l~~~l~ 578 (963)
T 2x19_B 501 SNVQLADTVMFTIGALSEWLADHPVMINSVLPLVLHALGN--PELSVSSVSTLKKICRECKYDLPPYAANIVAVSQDVLM 578 (963)
T ss_dssp CSHHHHHHHHHHHHHTHHHHHHCHHHHTTTHHHHHHHTTC--GGGHHHHHHHHHHHHHHTGGGCTTTHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHhCC--chHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhc
Confidence 56777777777777765543 34455566666666544 678888888888888765543 4445555556666
Q ss_pred hc--hhHHHHHHHHHHHHHHhh
Q 008865 116 AE--EIVERDAVHKALMSLLRQ 135 (550)
Q Consensus 116 sd--d~~E~~~v~~aL~sllk~ 135 (550)
.. +..+...+-.|+..++..
T Consensus 579 ~~~~~~~~~~~~~eai~~i~~~ 600 (963)
T 2x19_B 579 KQIHKTSQCMWLMQALGFLLSA 600 (963)
T ss_dssp TTCSCHHHHHHHHHHHHHHHTT
T ss_pred cCCCChHHHHHHHHHHHHHHhc
Confidence 42 346677777777777654
No 73
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=86.56 E-value=8.3 Score=44.24 Aligned_cols=162 Identities=12% Similarity=0.258 Sum_probs=97.2
Q ss_pred HHHHHHHhhhhhhccccccChhhHHHHHHHhcCCHHHHHHHhhhhhHHhccCCCcchHHHHHhhhhhcc-cchhHHHHHh
Q 008865 11 IEKLYEFGERLNEAKDKSQNVKDYEGIIEAAKTSLKAKQLAAQLIPRFFKFFPDLSSRAVDAHLDLIEE-EELGVRVQAI 89 (550)
Q Consensus 11 ie~LY~~~~~L~~akd~~~~~~~y~~Il~~~Kgs~k~K~LAaQfI~kffk~FP~L~e~Ai~a~lDLcED-ed~~IR~qai 89 (550)
|+++++.. ++.++++-+.+++-.-++..++-.+ .|+.| |+ +.++..++-|++. .++.|...||
T Consensus 8 v~~m~~i~--~~~~~~~~~~~~a~~nl~vl~re~a-----ga~~i---~~------~~~~~~~~~l~~~~~~~~~~~~~~ 71 (810)
T 3now_A 8 VKQMMDLT--FDLATPIDKRRAAANNLVVLAKEQT-----GAELL---YK------DHCIAKVASLTKVEKDQDIYVNMV 71 (810)
T ss_dssp HHHHHHHH--HSSCCSSHHHHHHHHHHHHHSSCHH-----HHHHH---HH------TTHHHHHHHHHHHCCCHHHHHHHH
T ss_pred HHHHHHHH--cccccCHHHHHHHHhhceeeecccc-----chHHH---Hh------CchHHHHHHHHhccCchhHHHHHH
Confidence 55565554 2245555588889999999988644 33333 32 4455566666666 7799999999
Q ss_pred hccccccccCcchhhhHHHH-----HHHHHhhchhHHHHHHHHHHHHHHhhchHHHHHHHHHhhccCCCCCChHHH---H
Q 008865 90 RGLPLFCKDTPEYLSKIVDI-----LVQLLAAEEIVERDAVHKALMSLLRQDVKASLTALFKHIGSVDEPSTDEFI---R 161 (550)
Q Consensus 90 k~Lp~lck~~~e~~~riaDV-----L~QLLqsdd~~E~~~v~~aL~sllk~D~k~tLt~lf~qI~~~~e~~~eE~v---R 161 (550)
|-|..+|+.++++..-+... ++++|.++++.-..++..-|-.+|. +|+++-++.. ...+++.+ .
T Consensus 72 r~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~---~~~~~~~~~~~~ 143 (810)
T 3now_A 72 HLVAALCENSVERTKGVLTELGVPWFMRVLDQKHENCVSTAQFCLQTILN-----ALSGLKNKPD---SKPDKELCTRNN 143 (810)
T ss_dssp HHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHCCSTTHHHHHHHHHHHHHH-----HHHTCCSSTT---CCCCHHHHHHTH
T ss_pred HHHHHHHhccHHHHHHHHHHcCHHHHHHHHcCCCHHHHHHHHHHHHHHHH-----HHhccccccc---cCCcHHHHhhhh
Confidence 99999999988776554433 5889999888777777665555443 3444433332 11233332 1
Q ss_pred HHHHHHHhhhcccchhhhcCChHHHHHHHHHHHHhhh
Q 008865 162 EKVLSFIRDKVFPLKAELLKPQEEMERHITDLIKKSL 198 (550)
Q Consensus 162 Er~lkFl~~kl~~l~~e~l~~~eE~Ee~i~~~ikKvL 198 (550)
..+-.++..=+..+..... +...+..+++++-|.+
T Consensus 144 ~~~~~~~~~l~~~~~~~~~--~~~~r~~~~~~~~~~~ 178 (810)
T 3now_A 144 REIDTLLTCLVYSITDRTI--SGAARDGVIELITRNV 178 (810)
T ss_dssp HHHHHHHHHHHHHHTCTTS--CHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHhhcccc--ChhhHHHHHHHHHHhC
Confidence 1122222222222333333 4566777888877765
No 74
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=86.34 E-value=42 Score=38.23 Aligned_cols=57 Identities=9% Similarity=0.037 Sum_probs=49.1
Q ss_pred CCHHHHHHHhhhhhHHhcc-CCCcchHHHHHhhhhhcccchhHHHHHhhccccccccC
Q 008865 43 TSLKAKQLAAQLIPRFFKF-FPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDT 99 (550)
Q Consensus 43 gs~k~K~LAaQfI~kffk~-FP~L~e~Ai~a~lDLcEDed~~IR~qaik~Lp~lck~~ 99 (550)
.+...+.-+|+.|...+++ ||+-=.+.+..++.++...|...+..|+.-|..+|+..
T Consensus 97 ~~~~ir~~l~~~ia~ia~~d~p~~Wp~ll~~L~~~l~s~~~~~~~~aL~~l~~i~~~~ 154 (960)
T 1wa5_C 97 LPNNLQVQIGEAISSIADSDFPDRWPTLLSDLASRLSNDDMVTNKGVLTVAHSIFKRW 154 (960)
T ss_dssp SCHHHHHHHHHHHHHHHHHHSTTTCTTHHHHHHTTCCSSCTTHHHHHHHHHHHHHGGG
T ss_pred CCHHHHHHHHHHHHHHHHhhCccchhHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Confidence 4578888899999998875 88666788999999999999999999999999999854
No 75
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=84.51 E-value=17 Score=41.64 Aligned_cols=131 Identities=15% Similarity=0.125 Sum_probs=88.4
Q ss_pred HHHHHHHhc-CCHHHHHHHhhhhhHHhcc------CCC-cchHHHHHhhhhhccc-chhHHHHHhhccccccccCcchhh
Q 008865 34 YEGIIEAAK-TSLKAKQLAAQLIPRFFKF------FPD-LSSRAVDAHLDLIEEE-ELGVRVQAIRGLPLFCKDTPEYLS 104 (550)
Q Consensus 34 y~~Il~~~K-gs~k~K~LAaQfI~kffk~------FP~-L~e~Ai~a~lDLcEDe-d~~IR~qaik~Lp~lck~~~e~~~ 104 (550)
..-++...+ |++..|+.||+-|.+.-.. |+. ....|+-.+++|+..+ +...+..|..+|-.++..+++...
T Consensus 538 ip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~ 617 (810)
T 3now_A 538 VKALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQ 617 (810)
T ss_dssp HHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred HHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHH
Confidence 444555444 8899999999999886543 332 1245889999999855 334467899999999998777655
Q ss_pred h-----HHHHHHHHHhhchhHHHHHHHHHHHHHHhhch--------HHHHHHHHHhhccCCCCCChHHHHHHHHHHHh
Q 008865 105 K-----IVDILVQLLAAEEIVERDAVHKALMSLLRQDV--------KASLTALFKHIGSVDEPSTDEFIREKVLSFIR 169 (550)
Q Consensus 105 r-----iaDVL~QLLqsdd~~E~~~v~~aL~sllk~D~--------k~tLt~lf~qI~~~~e~~~eE~vREr~lkFl~ 169 (550)
+ ..+.|.+||.++++.....+-.+|..|...+. .+.+..|..-+. ++++.+|+.+...|+
T Consensus 618 ~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~~~~~~~v~~~g~l~~Lv~LL~-----s~d~~vq~~Aa~ALa 690 (810)
T 3now_A 618 RIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIKMFEGNNDRVKFLALLCE-----DEDEETATACAGALA 690 (810)
T ss_dssp HHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSHHHHHHHHSSSSHHHHHHHGGG-----CSSHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCChHHHHHHHhccCcHHHHHHHhc-----CCCHHHHHHHHHHHH
Confidence 4 45689999999888877777777777665321 233444434343 455667765554443
No 76
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=84.42 E-value=70 Score=37.49 Aligned_cols=137 Identities=14% Similarity=0.110 Sum_probs=86.7
Q ss_pred hHHHHHHHHHhh-------hhhhccccccChhhHHHHHHHhcCCHHHHHHHhhhhhHHhccCCCcchHHHHHhhhhhccc
Q 008865 8 AKQIEKLYEFGE-------RLNEAKDKSQNVKDYEGIIEAAKTSLKAKQLAAQLIPRFFKFFPDLSSRAVDAHLDLIEEE 80 (550)
Q Consensus 8 ~~~ie~LY~~~~-------~L~~akd~~~~~~~y~~Il~~~Kgs~k~K~LAaQfI~kffk~FP~L~e~Ai~a~lDLcEDe 80 (550)
.+.|+++|+.+. .+-||=-.+...+.++.|++..+...-...-|+|.+.- .-+.+.-..+.++.+.+||+.+
T Consensus 325 ~e~L~~l~~~~~~~~~~r~~~lDal~~aGT~~a~~~i~~~i~~~~l~~~ea~~~l~~-~~~~~~Pt~e~l~~~~~l~~~~ 403 (1056)
T 1lsh_A 325 AGVLQSIWHKLHQQKDYRRWILDAVPAMATSEALLFLKRTLASEQLTSAEATQIVAS-TLSNQQATRESLSYARELLNTS 403 (1056)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCSCHHHHHHHHHH-HHHTCCCCHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHhHhcCCHHHHHHHHHHHHcCCCCHHHHHHHHHH-hhccCCCCHHHHHHHHHHHhCc
Confidence 355677776642 23333333345556666666555221111226677663 3355666789999999999986
Q ss_pred c----hhHHHHHhhcccc----cccc----CcchhhhHHHHHHHHHhhchhHHHHHHHHHHHHHHhhchHHHHHHHHHhh
Q 008865 81 E----LGVRVQAIRGLPL----FCKD----TPEYLSKIVDILVQLLAAEEIVERDAVHKALMSLLRQDVKASLTALFKHI 148 (550)
Q Consensus 81 d----~~IR~qaik~Lp~----lck~----~~e~~~riaDVL~QLLqsdd~~E~~~v~~aL~sllk~D~k~tLt~lf~qI 148 (550)
. +.+|..|+=++-. .|.+ .++++..+++.|.+.+...+..|..+.=+||-.+=+-. ++..|...|
T Consensus 404 ~~~~~~~l~~ta~La~gslV~k~c~~~~~c~~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~p~---~l~~l~~~l 480 (1056)
T 1lsh_A 404 FIRNRPILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQPN---SIKKIQRFL 480 (1056)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCGG---GHHHHHTTS
T ss_pred ccccCHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhccCChh---HHHHHHHhh
Confidence 5 4467766655532 3444 34779999999999999988888888888887776643 445444433
No 77
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20
Probab=84.26 E-value=40 Score=36.16 Aligned_cols=62 Identities=21% Similarity=0.315 Sum_probs=48.2
Q ss_pred hcccCCCCChhhhhhHHHHHHHhCCCCCchhhhhhhHHHHHHHHhhCCCCCCCCCccchHHHHHHHHHH
Q 008865 284 IIPVFDKLPEERKLDLLKALAEISPYTTPQDSRQILPSVAVLLKKYMPLRKTGGEEMNFTYVECLLYTF 352 (550)
Q Consensus 284 IlP~l~~L~~~~kl~lLK~lAE~s~~~~~~~a~~~l~~i~~~L~~~mP~~~~~~~~l~fS~vEcLL~af 352 (550)
++-+|=......++-+|..+.++...+.+.+-..+..++|..|...+-+ .+|...|..||-+
T Consensus 289 LLk~WP~tns~KevlFL~eleeile~~~~~ef~~i~~~lF~~la~ci~S-------~hfqVAErAL~~w 350 (449)
T 2npp_B 289 LLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIMEPLFRQLAKCVSS-------PHFQVAERALYYW 350 (449)
T ss_dssp HHHTCCSSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHTC-------SCHHHHHHHHGGG
T ss_pred HHHhCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHcC-------CCHHHHHHHHHHH
Confidence 3333433335677889999999999999999888999999999999954 6778888777654
No 78
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=83.79 E-value=13 Score=42.06 Aligned_cols=24 Identities=13% Similarity=0.243 Sum_probs=15.7
Q ss_pred CChhhHHHHHHHHHHhhhhhccCC
Q 008865 248 SDADHIDRLISCLYMALPFFLRGA 271 (550)
Q Consensus 248 sD~d~idRli~cl~~Alp~fs~~v 271 (550)
.+||.++-++.++...+.+.....
T Consensus 797 ~~pd~~~~~f~ll~~~l~~~p~~~ 820 (971)
T 2x1g_F 797 NISDTMETFFGCLTQIIKKIPQVL 820 (971)
T ss_dssp HTHHHHHHHHHHHHHHHHSSGGGG
T ss_pred cCchHHHHHHHHHHHHHHhCcHHH
Confidence 367888888777777765544333
No 79
>3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA glycosylase, DNA alkylation, L complex, hydrolase-DNA complex; HET: DNA; 1.50A {Bacillus cereus} SCOP: a.118.1.0 PDB: 3jx7_A* 3bvs_A 3jy1_A* 3jxz_A*
Probab=81.25 E-value=2.4 Score=40.95 Aligned_cols=98 Identities=12% Similarity=0.079 Sum_probs=75.5
Q ss_pred HHHHHHHhhhhhHHhccCCCcchHHHHHhhhhhcccchhHHHHHhhccccccccCcchhhhHHHHHHHHHhhchhHHHHH
Q 008865 45 LKAKQLAAQLIPRFFKFFPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQLLAAEEIVERDA 124 (550)
Q Consensus 45 ~k~K~LAaQfI~kffk~FP~L~e~Ai~a~lDLcEDed~~IR~qaik~Lp~lck~~~e~~~riaDVL~QLLqsdd~~E~~~ 124 (550)
.-+=.+|..++.+|++..|+. +..-+.....|+++-+|..||-.+-..-++ ........++..++.+++.=...+
T Consensus 111 d~~D~~a~~~~g~~~~~~p~~---~~~~l~~W~~s~~~w~rR~ai~~~l~~~~~--~d~~~~~~~i~~~~~d~~~yV~kA 185 (232)
T 3jxy_A 111 DSVDSIVPTFLGDIFLKHPEL---ISAYIPKWIASDNIWLQRAAILFQLKYKQK--MDEELLFWIIGQLHSSKEFFIQKA 185 (232)
T ss_dssp HHHHHHTTTHHHHHHHHCGGG---GGGTHHHHHHSSCHHHHHHHHHTTTTCGGG--CCHHHHHHHHHHHTTCCCHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHCHHH---HHHHHHHHhcCCchHHHHHHHHHHHHHHhC--CCHHHHHHHHHHhcCCHHHHHHHH
Confidence 345567788889999998872 334577899999999999998776544332 223356667788888999999999
Q ss_pred HHHHHHHHHhhchHHHHHHHHHh
Q 008865 125 VHKALMSLLRQDVKASLTALFKH 147 (550)
Q Consensus 125 v~~aL~sllk~D~k~tLt~lf~q 147 (550)
|-++|.++.+.+|..++.-|=.+
T Consensus 186 vgW~Lr~~~k~~p~~v~~fl~~~ 208 (232)
T 3jxy_A 186 IGWVLREYAKTNPDVVWEYVQNN 208 (232)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHS
T ss_pred HHHHHHHHHhhCHHHHHHHHHHC
Confidence 99999999999999887765554
No 80
>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17
Probab=81.05 E-value=5.2 Score=38.23 Aligned_cols=87 Identities=8% Similarity=0.004 Sum_probs=70.5
Q ss_pred hhhhHHhccCCCcchHHHHHhhhhhcccchhHHHHHhhccccccccCcchhhhHHHHHHHHHhhchhHHHHHHHHHHHHH
Q 008865 53 QLIPRFFKFFPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQLLAAEEIVERDAVHKALMSL 132 (550)
Q Consensus 53 QfI~kffk~FP~L~e~Ai~a~lDLcEDed~~IR~qaik~Lp~lck~~~e~~~riaDVL~QLLqsdd~~E~~~v~~aL~sl 132 (550)
..+.+|++..|+. ...-+...+.|++.-+|..||-.+-...+. .+...+-.++..++.+++-=..-+|-++|.++
T Consensus 112 ~~~~~~~~~~~~~---~~~~i~~W~~s~~~w~rR~ai~~~l~~~~~--~~~~~~~~i~~~~~~d~~~yV~kavgW~Lr~~ 186 (220)
T 2b6c_A 112 KFFGSWVALHLTE---LPTIFALFYGAENFWNRRVALNLQLMLKEK--TNQDLLKKAIIYDRTTEEFFIQKAIGWSLRQY 186 (220)
T ss_dssp HHHHHHHHHSGGG---HHHHHHHHTTCSSHHHHHHHHHTTTTCGGG--CCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHChHH---HHHHHHHHHcCCCHHHHHHHHHHHHHHHHC--CCHHHHHHHHHHhCCChHHHHHHHHHHHHHHH
Confidence 4578888887764 344578899999999999999888666332 45667777888888889989999999999999
Q ss_pred HhhchHHHHHHH
Q 008865 133 LRQDVKASLTAL 144 (550)
Q Consensus 133 lk~D~k~tLt~l 144 (550)
.+.||..++.=|
T Consensus 187 ~k~~~~~v~~fl 198 (220)
T 2b6c_A 187 SKTNPQWVEELM 198 (220)
T ss_dssp TTTCHHHHHHHH
T ss_pred HhhCHHHHHHHH
Confidence 999999888777
No 81
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=80.03 E-value=1.6 Score=44.80 Aligned_cols=69 Identities=16% Similarity=0.183 Sum_probs=45.1
Q ss_pred HHHHhhhhhcccchhHHHHHhhccccccccCcchhhhH-----HHHHHHHHhhchhHHHHHHHHHHHHHHhhch
Q 008865 69 AVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKI-----VDILVQLLAAEEIVERDAVHKALMSLLRQDV 137 (550)
Q Consensus 69 Ai~a~lDLcEDed~~IR~qaik~Lp~lck~~~e~~~ri-----aDVL~QLLqsdd~~E~~~v~~aL~sllk~D~ 137 (550)
+|..++.|..+.+..|+..|...|..+|..+++....+ ...|++||.+.++.-...+-.+|..|...+|
T Consensus 264 ~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~~ 337 (354)
T 3nmw_A 264 CLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRP 337 (354)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCC
T ss_pred CHHHHHHHHcCCChHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCH
Confidence 45566666667777777777777777776666654433 4667777777666666666666666665543
No 82
>2jak_A Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; B56G, PP2A, PPP2R5C, phosphorylation; 2.60A {Homo sapiens} SCOP: a.118.1.20
Probab=79.90 E-value=54 Score=34.56 Aligned_cols=61 Identities=21% Similarity=0.305 Sum_probs=48.0
Q ss_pred cccCCCCChhhhhhHHHHHHHhCCCCCchhhhhhhHHHHHHHHhhCCCCCCCCCccchHHHHHHHHHH
Q 008865 285 IPVFDKLPEERKLDLLKALAEISPYTTPQDSRQILPSVAVLLKKYMPLRKTGGEEMNFTYVECLLYTF 352 (550)
Q Consensus 285 lP~l~~L~~~~kl~lLK~lAE~s~~~~~~~a~~~l~~i~~~L~~~mP~~~~~~~~l~fS~vEcLL~af 352 (550)
+-.|=......++-+|..+.++...+.+.+-.++..++|..|...+-+ -+|...|..||.+
T Consensus 302 Lk~WP~tns~KevlFL~eleeiLe~~~~~~f~~i~~~lF~~la~ci~S-------~hfqVAErAL~~w 362 (392)
T 2jak_A 302 LKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIMEPLFRQLAKCVSS-------PHFQVAERALYYW 362 (392)
T ss_dssp HHSSCSSCCTTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHTC-------SSHHHHHHHHGGG
T ss_pred HHhCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHcC-------CcHHHHHHHHHHh
Confidence 333333334677888999999999899999888999999999999954 6788888888765
No 83
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=79.17 E-value=34 Score=40.12 Aligned_cols=222 Identities=16% Similarity=0.216 Sum_probs=117.3
Q ss_pred hhHHHHHHHHHhhchh---HHHHHHHHHHHHHHhhchHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhhhcccchhhhc
Q 008865 104 SKIVDILVQLLAAEEI---VERDAVHKALMSLLRQDVKASLTALFKHIGSVDEPSTDEFIREKVLSFIRDKVFPLKAELL 180 (550)
Q Consensus 104 ~riaDVL~QLLqsdd~---~E~~~v~~aL~sllk~D~k~tLt~lf~qI~~~~e~~~eE~vREr~lkFl~~kl~~l~~e~l 180 (550)
..+.++|-+|...... .+....-.-|+.+++.-+...|..++.++. . .+..|. ++.+-|....
T Consensus 288 ~~~~e~lk~L~~~~~~~v~~~~~~~f~~Lv~~lR~~~~e~L~~l~~~~~-----~-~~~~r~----~~lDal~~aG---- 353 (1056)
T 1lsh_A 288 SEIHTVLKHLVENNQLSVHEDAPAKFLRLTAFLRNVDAGVLQSIWHKLH-----Q-QKDYRR----WILDAVPAMA---- 353 (1056)
T ss_dssp HHHHHHHHHHHHHCSSSCCTTHHHHHHHHHHHHTTSCHHHHHHHHHHHT-----T-SHHHHH----HHHHHHHHHC----
T ss_pred HHHHHHHHHHHhccccccCcchHHHHHHHHHHHhcCCHHHHHHHHHHHh-----c-cHHHHH----HHHHHhHhcC----
Confidence 3455555555443211 222222334778888888889999999986 2 233333 3444443332
Q ss_pred CChHHHHHHHHHHHHhhhcccchHHHHHHHHHHhhccccCCCCchhHHHHHHHHHHHhhcccccCCCCChhhHHH--HHH
Q 008865 181 KPQEEMERHITDLIKKSLEDVTGAEFRMFMDFLKSLSLFGEKAPTERMKELIGIIEGQADLDAQFNVSDADHIDR--LIS 258 (550)
Q Consensus 181 ~~~eE~Ee~i~~~ikKvL~dVt~~EF~l~m~lL~sL~~~~~~~~~gr~qeLv~~i~eqa~Ld~~f~~sD~d~idR--li~ 258 (550)
|.++-.+|.+.|+. .+++..|+..++..+..+. .|. .++++.+.+.+..... .+++ .+.. ++.
T Consensus 354 --T~~a~~~i~~~i~~--~~l~~~ea~~~l~~~~~~~-----~Pt---~e~l~~~~~l~~~~~~--~~~~-~l~~ta~La 418 (1056)
T 1lsh_A 354 --TSEALLFLKRTLAS--EQLTSAEATQIVASTLSNQ-----QAT---RESLSYARELLNTSFI--RNRP-ILRKTAVLG 418 (1056)
T ss_dssp --SHHHHHHHHHHHHT--TCSCHHHHHHHHHHHHHTC-----CCC---HHHHHHHHHHHTCHHH--HTCH-HHHHHHHHH
T ss_pred --CHHHHHHHHHHHHc--CCCCHHHHHHHHHHhhccC-----CCC---HHHHHHHHHHHhCccc--ccCH-HHHHHHHHH
Confidence 66788888888866 7899999854443333332 233 5677666655332210 1111 1211 222
Q ss_pred HHHHhhhhhccC-CCchhHHHHHHhhhcccCCCCChhhhhhHHHHHHHhCCCCCchhhhhhhHHHHHHHHhhCCCCCCCC
Q 008865 259 CLYMALPFFLRG-ASGSKFLNYLNKHIIPVFDKLPEERKLDLLKALAEISPYTTPQDSRQILPSVAVLLKKYMPLRKTGG 337 (550)
Q Consensus 259 cl~~Alp~fs~~-v~st~f~~y~~~~IlP~l~~L~~~~kl~lLK~lAE~s~~~~~~~a~~~l~~i~~~L~~~mP~~~~~~ 337 (550)
...++-.++... .-+.+.+.++.+.+...++.=+++.++=.||+|.-+-. |.....|..|+|......
T Consensus 419 ~gslV~k~c~~~~~c~~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~-----------p~~l~~l~~~l~~~~~~~ 487 (1056)
T 1lsh_A 419 YGSLVFRYCANTVSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQ-----------PNSIKKIQRFLPGQGKSL 487 (1056)
T ss_dssp HHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC-----------GGGHHHHHTTSTTSSSCC
T ss_pred HHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhccCC-----------hhHHHHHHHhhcCccccc
Confidence 223333333221 11234444444444433343345667777888776633 334567888988532212
Q ss_pred CccchHHHHHHHHHHHHhhhcCchhhhh
Q 008865 338 EEMNFTYVECLLYTFHHLAHKAPNATNS 365 (550)
Q Consensus 338 ~~l~fS~vEcLL~afh~L~~k~p~~l~~ 365 (550)
.+.....-=+-+.||..++.+.|....+
T Consensus 488 ~~~~~rvr~aAi~ALr~~~~~~p~~v~~ 515 (1056)
T 1lsh_A 488 DEYSTRVQAEAIMALRNIAKRDPRKVQE 515 (1056)
T ss_dssp CCSCHHHHHHHHHTTTTGGGTCHHHHHH
T ss_pred cccchHHHHHHHHHHHHhhhhchHHHHH
Confidence 2232222224477899999888865433
No 84
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=78.21 E-value=6.5 Score=38.27 Aligned_cols=97 Identities=14% Similarity=0.119 Sum_probs=63.4
Q ss_pred HHHHHHhc-CCH--HHHHHHhhhhhHHhccCCCcc-----hHHHHHhhhhhcccchhHHHHHhhccccccccCcchhhh-
Q 008865 35 EGIIEAAK-TSL--KAKQLAAQLIPRFFKFFPDLS-----SRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSK- 105 (550)
Q Consensus 35 ~~Il~~~K-gs~--k~K~LAaQfI~kffk~FP~L~-----e~Ai~a~lDLcEDed~~IR~qaik~Lp~lck~~~e~~~r- 105 (550)
..++.... +++ ..+.-|+..|..--...|+-. .-+|-.+++|...++..||.+|...|-.|+.+++++-..
T Consensus 11 ~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk~~I 90 (233)
T 3tt9_A 11 ERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNKLEV 90 (233)
T ss_dssp HHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 34444444 444 566666666665444444333 246788899999999999999999999999887766443
Q ss_pred ----HHHHHHHHHhh-chhHHHHHHHHHHHH
Q 008865 106 ----IVDILVQLLAA-EEIVERDAVHKALMS 131 (550)
Q Consensus 106 ----iaDVL~QLLqs-dd~~E~~~v~~aL~s 131 (550)
....|++||.+ .+......+--+|-.
T Consensus 91 ~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~n 121 (233)
T 3tt9_A 91 AELNGVPRLLQVLKQTRDLETKKQITGLLWN 121 (233)
T ss_dssp HHTTHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHccCCCHHHHHHHHHHHHH
Confidence 46679999974 455444444333333
No 85
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=77.50 E-value=78 Score=34.47 Aligned_cols=102 Identities=17% Similarity=0.235 Sum_probs=81.5
Q ss_pred HHHHHhhhhhcccchhHHHHHhhccccccccCcchhhhHHHHHHHHHhhchhHHHHHHHHHHHHHHhhchHHHHHHHHHh
Q 008865 68 RAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQLLAAEEIVERDAVHKALMSLLRQDVKASLTALFKH 147 (550)
Q Consensus 68 ~Ai~a~lDLcEDed~~IR~qaik~Lp~lck~~~e~~~riaDVL~QLLqsdd~~E~~~v~~aL~sllk~D~k~tLt~lf~q 147 (550)
++...+++...- +....+=|=--||.+.|.-|++-.+-.|.+.-|.-.||...+..+-+.|..+-+-+--.-+..++.|
T Consensus 29 ~~y~~Il~~~kg-~~k~K~LaaQ~I~kffk~FP~l~~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~~~i~kiaDvL~Q 107 (507)
T 3u0r_A 29 DAYQVILDGVKG-GTKEKRLAAQFIPKFFKHFPELADSAINAQLDLCEDEDVSIRRQAIKELPQFATGENLPRVADILTQ 107 (507)
T ss_dssp HHHHHHHHGGGS-CHHHHHHHHHHHHHHGGGCGGGHHHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCTTCHHHHHHHHHH
T ss_pred HHHHHHHHhcCC-CHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcccHHHHHHHHHhhHHHhhhhhhhhHHHHHHH
Confidence 446667776665 3566666778899999999999999999999999999999999998999888887777888899999
Q ss_pred hccCCCCCChHHHHHHHHHHHhh
Q 008865 148 IGSVDEPSTDEFIREKVLSFIRD 170 (550)
Q Consensus 148 I~~~~e~~~eE~vREr~lkFl~~ 170 (550)
+...+++.+=+.|+.-++.+++.
T Consensus 108 lLqtdd~~E~~~V~~sL~sllk~ 130 (507)
T 3u0r_A 108 LLQTDDSAEFNLVNNALLSIFKM 130 (507)
T ss_dssp HTTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHhccchHHHHHHHHHHHHHHhc
Confidence 99655554444577777777664
No 86
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=77.44 E-value=98 Score=34.73 Aligned_cols=60 Identities=25% Similarity=0.272 Sum_probs=45.3
Q ss_pred HHHHHHHHHhhchhHHHHHHHHHHHHHHhhchH----------HHHHHHHHhhccCCCCCChHHHHHHHHHHHhh
Q 008865 106 IVDILVQLLAAEEIVERDAVHKALMSLLRQDVK----------ASLTALFKHIGSVDEPSTDEFIREKVLSFIRD 170 (550)
Q Consensus 106 iaDVL~QLLqsdd~~E~~~v~~aL~sllk~D~k----------~tLt~lf~qI~~~~e~~~eE~vREr~lkFl~~ 170 (550)
..-+|+.||+++|.-.+-.+=+.|..|+...|. +.+..|.+-+. +.-|.+|...+-+|..
T Consensus 123 ~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~-----d~rE~iRneallLL~~ 192 (651)
T 3grl_A 123 NVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLA-----DSREVIRNDGVLLLQA 192 (651)
T ss_dssp HHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGG-----CSSHHHHHHHHHHHHH
T ss_pred cHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHh-----CchHHHHHHHHHHHHH
Confidence 455668899999998888888999999988877 34455555554 4458899988887764
No 87
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=76.73 E-value=15 Score=35.28 Aligned_cols=131 Identities=14% Similarity=0.220 Sum_probs=83.7
Q ss_pred CCHHHHHHHhhhhhHHhccCCC----------cchHHHHHhhhh-hcccchhHHHHHhhccccccccCcchhhhHHHHHH
Q 008865 43 TSLKAKQLAAQLIPRFFKFFPD----------LSSRAVDAHLDL-IEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDILV 111 (550)
Q Consensus 43 gs~k~K~LAaQfI~kffk~FP~----------L~e~Ai~a~lDL-cEDed~~IR~qaik~Lp~lck~~~e~~~riaDVL~ 111 (550)
....+-..|.+.+..|.+.+.. .....+..+++= +-|....+|..|+..|-.+|... -....+.+.|.
T Consensus 67 sN~~v~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~-~~~~~~~e~l~ 145 (278)
T 4ffb_C 67 SNVVAQEQAIVALNSLIDAFASSSLKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLD-TSITQSVELVI 145 (278)
T ss_dssp SSHHHHHHHHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTS-SSSHHHHHHHG
T ss_pred chHHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhc-CcHHHHHHHHH
Confidence 4566667777777777765432 234445556653 46777888988888887776432 23456778888
Q ss_pred HHHhhchhHHHHHHHHHHHHHHhh------chHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhhhcccc
Q 008865 112 QLLAAEEIVERDAVHKALMSLLRQ------DVKASLTALFKHIGSVDEPSTDEFIREKVLSFIRDKVFPL 175 (550)
Q Consensus 112 QLLqsdd~~E~~~v~~aL~sllk~------D~k~tLt~lf~qI~~~~e~~~eE~vREr~lkFl~~kl~~l 175 (550)
..|..-.|.-+..+-..|..++.. +++..+..++..+..- -.+.+..||+-+++++.+=.+-+
T Consensus 146 ~~l~~Knpkv~~~~l~~l~~~l~~fg~~~~~~k~~l~~i~~~l~k~-l~d~~~~VR~aA~~l~~~ly~~~ 214 (278)
T 4ffb_C 146 PFFEKKLPKLIAAAANCVYELMAAFGLTNVNVQTFLPELLKHVPQL-AGHGDRNVRSQTMNLIVEIYKVT 214 (278)
T ss_dssp GGGGCSCHHHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHGGGHHHH-HTCSSHHHHHHHHHHHHHHHTC-
T ss_pred HHHhccCHHHHHHHHHHHHHHHHHhCCCcCCchhHHHHHHHHHHHH-HhCCcHHHHHHHHHHHHHHHHHh
Confidence 888888887777777777776654 5666666554443100 01556789999999887643333
No 88
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=75.75 E-value=57 Score=37.32 Aligned_cols=137 Identities=16% Similarity=0.290 Sum_probs=80.9
Q ss_pred HHHHHhhhhhHHhccCCCcchHHHHHhhhhhcccchhHHHHHhhcc---ccccccCcchhhhHHHHHHHHHhhchhHHHH
Q 008865 47 AKQLAAQLIPRFFKFFPDLSSRAVDAHLDLIEEEELGVRVQAIRGL---PLFCKDTPEYLSKIVDILVQLLAAEEIVERD 123 (550)
Q Consensus 47 ~K~LAaQfI~kffk~FP~L~e~Ai~a~lDLcEDed~~IR~qaik~L---p~lck~~~e~~~riaDVL~QLLqsdd~~E~~ 123 (550)
..+|.-+-++||-.-|-.+++++++.+.+-.++.+.. +.-++.| -...++. |++=.--|..|
T Consensus 94 l~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~--~~ll~~~~~~~~~~~~~--~~~~~l~~~~~----------- 158 (778)
T 3opb_A 94 LSKLIQNDIPFALNLFEILSRSSIHVFVGCFSNKDAT--IALLNELQIRIHYGEDT--HVTYLLSIILQ----------- 158 (778)
T ss_dssp HHHHHHHTHHHHHHHHHTSCGGGHHHHHTTCCSGGGG--HHHHHHHHHHHHHTCSS--CHHHHHHHHHH-----------
T ss_pred HHHHHHhChHHHHHHHHhccCCceEeecccCCCHHHH--HHHHHHHHHHhhcCCCc--chhHHHHHHHH-----------
Confidence 3567788899999999999999999999999888733 2333333 2222221 23333333333
Q ss_pred HHHHHHHHHHhhchHHHHHHHHHhhccCCCCCChHHHHHHHH-HHHhhhcccchhhhcCChHHHHHHHHHHHHhhh----
Q 008865 124 AVHKALMSLLRQDVKASLTALFKHIGSVDEPSTDEFIREKVL-SFIRDKVFPLKAELLKPQEEMERHITDLIKKSL---- 198 (550)
Q Consensus 124 ~v~~aL~sllk~D~k~tLt~lf~qI~~~~e~~~eE~vREr~l-kFl~~kl~~l~~e~l~~~eE~Ee~i~~~ikKvL---- 198 (550)
|++.|..++.. |.-|...|-. -++++.+|--++ -|++. ... ..++..+.+.+-|.-.+
T Consensus 159 -----l~~~~~~~~~~-~~~l~~~~~~---~~~~~~~~~~~l~i~~~~--~~~------~~~~~~~~~~~~~~~l~~e~~ 221 (778)
T 3opb_A 159 -----LLNKFKYNFKE-VRFLVKELIL---RISEDEVKSMMLIIFAEL--QSS------FQKDFDKAVVDFMSSLIVEAE 221 (778)
T ss_dssp -----HHHHSCCCSTT-TTHHHHHHHT---TTTCHHHHHHHHHHHHHH--HHH------HHHHHHHHHHHHHHHHHHHHH
T ss_pred -----HHHHcCccccc-hhhHHHHhcc---ccChhhhHHHHHHHHHHH--HHh------CchHHHHHHHHHHHHHHHhhc
Confidence 44666666665 6666666652 244455664443 23221 111 13456666666666333
Q ss_pred cccchHHHHHHHHHHhh
Q 008865 199 EDVTGAEFRMFMDFLKS 215 (550)
Q Consensus 199 ~dVt~~EF~l~m~lL~s 215 (550)
.+++.++|..++++|..
T Consensus 222 ~~~~~~~~~~~~~~l~~ 238 (778)
T 3opb_A 222 IDVGNDPLSIIVKTLSE 238 (778)
T ss_dssp HTCSSCHHHHHHHHHHH
T ss_pred cCCCCccHHHHHHHHHH
Confidence 46677888877777764
No 89
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=74.95 E-value=8.1 Score=42.67 Aligned_cols=105 Identities=14% Similarity=0.125 Sum_probs=78.6
Q ss_pred ChhhHHHHHHHhc-CCHHHHHHHhhhhhHHhccCCCcch-----HHHHHhhhhhcccchhHHHHHhhcccccccc-Ccch
Q 008865 30 NVKDYEGIIEAAK-TSLKAKQLAAQLIPRFFKFFPDLSS-----RAVDAHLDLIEEEELGVRVQAIRGLPLFCKD-TPEY 102 (550)
Q Consensus 30 ~~~~y~~Il~~~K-gs~k~K~LAaQfI~kffk~FP~L~e-----~Ai~a~lDLcEDed~~IR~qaik~Lp~lck~-~~e~ 102 (550)
+...-..++.... +++..+.-||..|...-...++... -+|-.++.|....+..|+.+|...|-.||.. ++++
T Consensus 46 ~~~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~n 125 (584)
T 3l6x_A 46 RQPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDN 125 (584)
T ss_dssp CCCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHH
T ss_pred ccccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHH
Confidence 3345666666666 8899999999999888766665433 4788899999999999999999999999984 5555
Q ss_pred hhh-----HHHHHHHHHhhc-hhHHHHHHHHHHHHHHh
Q 008865 103 LSK-----IVDILVQLLAAE-EIVERDAVHKALMSLLR 134 (550)
Q Consensus 103 ~~r-----iaDVL~QLLqsd-d~~E~~~v~~aL~sllk 134 (550)
-.. .+..|++||.+. +......+..+|..|-.
T Consensus 126 k~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~ 163 (584)
T 3l6x_A 126 KIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSS 163 (584)
T ss_dssp HHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhC
Confidence 333 567899999984 44445666666666644
No 90
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=74.33 E-value=2.5 Score=45.10 Aligned_cols=69 Identities=16% Similarity=0.183 Sum_probs=52.9
Q ss_pred HHHHhhhhhcccchhHHHHHhhccccccccCcchhhhH-----HHHHHHHHhhchhHHHHHHHHHHHHHHhhch
Q 008865 69 AVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKI-----VDILVQLLAAEEIVERDAVHKALMSLLRQDV 137 (550)
Q Consensus 69 Ai~a~lDLcEDed~~IR~qaik~Lp~lck~~~e~~~ri-----aDVL~QLLqsdd~~E~~~v~~aL~sllk~D~ 137 (550)
+|..++.|..+.+..|+++|...|..+|..+++....+ ...|++||.+.++.....+-.+|..|+..+|
T Consensus 380 ~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~p 453 (458)
T 3nmz_A 380 CLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRP 453 (458)
T ss_dssp HHHHHHHHSSCSCHHHHHHHHHHHHHHHSSCHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTCCS
T ss_pred cHHHHHHHHcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCH
Confidence 45567788888888888888888888887777765544 5678888888877777888888887776654
No 91
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=73.16 E-value=27 Score=40.92 Aligned_cols=291 Identities=14% Similarity=0.195 Sum_probs=148.3
Q ss_pred HHHHHhhhhhcc-----cchhHHH---HHhhccccccccCcchhhhHHHHHHHHHhhchhHHHHHHHHHHHHHHhhchHH
Q 008865 68 RAVDAHLDLIEE-----EELGVRV---QAIRGLPLFCKDTPEYLSKIVDILVQLLAAEEIVERDAVHKALMSLLRQDVKA 139 (550)
Q Consensus 68 ~Ai~a~lDLcED-----ed~~IR~---qaik~Lp~lck~~~e~~~riaDVL~QLLqsdd~~E~~~v~~aL~sllk~D~k~ 139 (550)
++|..++.||++ .-+.||- ..|-..+.+...+|+|++.+...|.+-|..+.+....++-.||..|-..- +.
T Consensus 495 ~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~~L~~vl~~L~~~l~~~~~~v~~~A~~al~~l~~~c-~~ 573 (1023)
T 4hat_C 495 TVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKC-KY 573 (1023)
T ss_dssp HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHH-TH
T ss_pred HHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHH-HH
Confidence 345567888883 4444552 45677788888899999999999999998777778888888888877642 21
Q ss_pred HHHHHHHhhccCCCCCChHHHHHHHHHHHhhhcccchhhhcCChHHHHHHHHHHHHhhhcccchHH-HHHHHHHHhhccc
Q 008865 140 SLTALFKHIGSVDEPSTDEFIREKVLSFIRDKVFPLKAELLKPQEEMERHITDLIKKSLEDVTGAE-FRMFMDFLKSLSL 218 (550)
Q Consensus 140 tLt~lf~qI~~~~e~~~eE~vREr~lkFl~~kl~~l~~e~l~~~eE~Ee~i~~~ikKvL~dVt~~E-F~l~m~lL~sL~~ 218 (550)
.|.. . ++++.+.-=+.++.++..-.. .+ ..+....+.+.|-.+++.++.++ -..+++.|-....
T Consensus 574 ~l~~----~----~~~e~~p~~~~il~~l~~~~~-----~l--~~~~~~~lyeai~~vi~~~~~~~~~~~~l~~L~~~~~ 638 (1023)
T 4hat_C 574 HFVI----Q----QPRESEPFIQTIIRDIQKTTA-----DL--QPQQVHTFYKACGIIISEERSVAERNRLLSDLMQLPN 638 (1023)
T ss_dssp HHHS----C----CTTCSSCHHHHHHHTHHHHHT-----TS--CHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHTHHHH
T ss_pred Hhhc----c----CCCCCchhHHHHHHHHHHHHH-----hC--CHHHHHHHHHHHHHHHHhCCCHhhHHHHHHHHHHhHH
Confidence 1211 0 011111111112222221111 12 33555677777878877777555 3334433332211
Q ss_pred cCCCCchhHHHHHHHHHHHhhcccccCC-CCChhhHHHHHHHHHHhhhhhccCCCchhHHHHHHhhhcccCCCC------
Q 008865 219 FGEKAPTERMKELIGIIEGQADLDAQFN-VSDADHIDRLISCLYMALPFFLRGASGSKFLNYLNKHIIPVFDKL------ 291 (550)
Q Consensus 219 ~~~~~~~gr~qeLv~~i~eqa~Ld~~f~-~sD~d~idRli~cl~~Alp~fs~~v~st~f~~y~~~~IlP~l~~L------ 291 (550)
.+.+++++ ++ .++.. -.|+|.+++++..++.--...+. -+..|+.|+. .|+|.+-++
T Consensus 639 -------~~~~~l~~----~~--~~~~~~~~d~~~~~~l~~il~~~~~v~~~--lg~~f~~~~~-~i~~~~l~~y~~~s~ 702 (1023)
T 4hat_C 639 -------MAWDTIVE----QS--TANPTLLLDSETVKIIANIIKTNVAVCTS--MGADFYPQLG-HIYYNMLQLYRAVSS 702 (1023)
T ss_dssp -------HHHHHHHH----HH--HHCTTGGGCHHHHHHHHHHHHHHHHHHHH--HGGGGHHHHH-HHHHHHHHHHHHHHH
T ss_pred -------HHHHHHHH----HH--hcCchhhcCHHHHHHHHHHHHHHHHHHHH--hcHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 22233333 22 12222 24677788888766632222211 2245554432 344421111
Q ss_pred ----------------Ch-----hhhhhHHHHHHHhCCCC-Cchh-hhhhhHHHHHHHHh-hCCCCCCCCCccchHHHHH
Q 008865 292 ----------------PE-----ERKLDLLKALAEISPYT-TPQD-SRQILPSVAVLLKK-YMPLRKTGGEEMNFTYVEC 347 (550)
Q Consensus 292 ----------------~~-----~~kl~lLK~lAE~s~~~-~~~~-a~~~l~~i~~~L~~-~mP~~~~~~~~l~fS~vEc 347 (550)
|. ..|-++||++--...-| +.+. +..++|++++.++. |....|..-. =|
T Consensus 703 ~i~~~~~~~g~~~~~~~~~r~~r~ik~~il~l~~~~i~~~~~~~~~~~~~~~~l~~~vl~dY~~~~~~~r~-------~~ 775 (1023)
T 4hat_C 703 MISAQVAAEGLIATKTPKVRGLRTIKKEILKLVETYISKARNLDDVVKVLVEPLLNAVLEDYMNNVPDARD-------AE 775 (1023)
T ss_dssp HHHHHHHHHCGGGGGSHHHHHHHHHHHHHHHHHHHHHHHCSCHHHHHHHTHHHHHHHHHHHHHHSCGGGCC-------HH
T ss_pred HHHHHHHhCCchhhccHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHhHHHHHHHHHHHHHhCChhhcc-------HH
Confidence 11 12234455554443333 3333 77788888776654 6655442100 25
Q ss_pred HHHHHHHhhhcCchh--------hhhc--cCcccccCCCCCccCcChhhhHHHHHHHHHHHHHHH
Q 008865 348 LLYTFHHLAHKAPNA--------TNSL--CGYKIVTGQPSDRLGEDFSDCYKDFTERLTTVEDLT 402 (550)
Q Consensus 348 LL~afh~L~~k~p~~--------l~~~--cg~k~~Tgqpsd~lgeD~~~~~kdFr~RLqyl~~~~ 402 (550)
.||.+..+..|..+. +..+ |-+..++. +-+|+++.-.+|-.=|+.+...|
T Consensus 776 vL~l~s~iv~~~~~~~~~~~~~il~~vf~~Tl~mi~~-----~~~~~Pe~r~~ff~ll~~~~~~~ 835 (1023)
T 4hat_C 776 VLNCMTTVVEKVGHMIPQGVILILQSVFECTLDMINK-----DFTEYPEHRVEFYKLLKVINEKS 835 (1023)
T ss_dssp HHHHHHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHSS-----CSSSSHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhc-----ccccChHHHHHHHHHHHHHHHHC
Confidence 677777776665443 2221 22222321 11467777777766665554444
No 92
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=72.66 E-value=8.7 Score=40.08 Aligned_cols=96 Identities=11% Similarity=0.117 Sum_probs=64.6
Q ss_pred HHHhhhhhcccchhHHHHHhhccccccccCcchh-----hhHHHHHHHHHhhchhHHHHHHHHHHHHHHhhch--H----
Q 008865 70 VDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYL-----SKIVDILVQLLAAEEIVERDAVHKALMSLLRQDV--K---- 138 (550)
Q Consensus 70 i~a~lDLcEDed~~IR~qaik~Lp~lck~~~e~~-----~riaDVL~QLLqsdd~~E~~~v~~aL~sllk~D~--k---- 138 (550)
|..++.+...+|+.+|..|...|-.+|.++++.- ..+...|+++|.++++.....+-.+|..|...++ +
T Consensus 4 l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i~ 83 (457)
T 1xm9_A 4 IPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETR 83 (457)
T ss_dssp HHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 5566777777888888899988888888775532 1256789999999888888888888888876422 2
Q ss_pred --HHHHHHHHhhccCCCCCChHHHHHHHHHHHh
Q 008865 139 --ASLTALFKHIGSVDEPSTDEFIREKVLSFIR 169 (550)
Q Consensus 139 --~tLt~lf~qI~~~~e~~~eE~vREr~lkFl~ 169 (550)
|.+..|...+.. +++..+++.+..-|.
T Consensus 84 ~~G~i~~Lv~lL~~----~~~~~~~~~a~~aL~ 112 (457)
T 1xm9_A 84 RQNGIREAVSLLRR----TGNAEIQKQLTGLLW 112 (457)
T ss_dssp HTTCHHHHHHHHTT----CCCHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHhh----CCCHHHHHHHHHHHH
Confidence 223344444431 345567776655443
No 93
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*
Probab=72.15 E-value=1e+02 Score=32.51 Aligned_cols=59 Identities=22% Similarity=0.303 Sum_probs=47.5
Q ss_pred cCCCCChhhhhhHHHHHHHhCCCCCchhhhhhhHHHHHHHHhhCCCCCCCCCccchHHHHHHHHHH
Q 008865 287 VFDKLPEERKLDLLKALAEISPYTTPQDSRQILPSVAVLLKKYMPLRKTGGEEMNFTYVECLLYTF 352 (550)
Q Consensus 287 ~l~~L~~~~kl~lLK~lAE~s~~~~~~~a~~~l~~i~~~L~~~mP~~~~~~~~l~fS~vEcLL~af 352 (550)
+|-......++-+|..+.++...+.+.+-..+..++|..|...+-+ -+|...|.-||.+
T Consensus 259 ~WP~tns~KevlFL~Ele~iLe~~~~~~f~~i~~~lf~~la~ci~S-------~hfqVAErAL~~w 317 (403)
T 3fga_B 259 YWPKTHSPKEVMFLNELEEILDVIEPSEFVKIMEPLFRQLAKCVSS-------PHFQVAERALYYW 317 (403)
T ss_dssp TCCSSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHTC-------SCHHHHHHHHGGG
T ss_pred hCCCCCcHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHCC-------CCHHHHHHHHHHh
Confidence 3333335678889999999999999999888999999999999954 5788888877655
No 94
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=72.13 E-value=14 Score=36.56 Aligned_cols=92 Identities=14% Similarity=0.123 Sum_probs=70.0
Q ss_pred chHHHHHhhhhhcccchhHHHHHhhccccccccCcchhhhHHHHHHHHH---hhchh-HHHHHHHHHHHHHHh-hchHHH
Q 008865 66 SSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQLL---AAEEI-VERDAVHKALMSLLR-QDVKAS 140 (550)
Q Consensus 66 ~e~Ai~a~lDLcEDed~~IR~qaik~Lp~lck~~~e~~~riaDVL~QLL---qsdd~-~E~~~v~~aL~sllk-~D~k~t 140 (550)
.++-+....+|..|+.=.||..|+.-|-.+ . -..|+|..+. .+|+. ..++++-.++..++. .+|..+
T Consensus 69 ~~~~~~la~~L~~~~~deVR~~Av~lLg~~-~-------~~~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe~~ 140 (240)
T 3l9t_A 69 GEYIKKLAFLAYQSDVYQVRMYAVFLFGYL-S-------KDKEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYKKA 140 (240)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHT-T-------TSHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTTTT
T ss_pred HHHHHHHHHHHHhCcchHHHHHHHHHHHhc-c-------CcHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHHHH
Confidence 355566667788888778999999966665 2 2255555443 33333 888899999999997 899988
Q ss_pred HHHHHHhhccCCCCCChHHHHHHHHHHHhh
Q 008865 141 LTALFKHIGSVDEPSTDEFIREKVLSFIRD 170 (550)
Q Consensus 141 Lt~lf~qI~~~~e~~~eE~vREr~lkFl~~ 170 (550)
+..|..|.. +++.-||.-++.+++-
T Consensus 141 l~~~~~W~~-----d~n~~VRR~Ase~~rp 165 (240)
T 3l9t_A 141 LPIIDEWLK-----SSNLHTRRAATEGLRI 165 (240)
T ss_dssp HHHHHHHHH-----CSSHHHHHHHHHHTCS
T ss_pred HHHHHHHhc-----CCCHHHHHHHHHhhHH
Confidence 999999998 7788899999988753
No 95
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=72.05 E-value=10 Score=38.79 Aligned_cols=67 Identities=16% Similarity=0.104 Sum_probs=48.9
Q ss_pred HHHHHhhhhhc-----------ccchhHHHHHhhccccccccCcchhhh------HHHHHHHHHhhchhHHHHHHHHHHH
Q 008865 68 RAVDAHLDLIE-----------EEELGVRVQAIRGLPLFCKDTPEYLSK------IVDILVQLLAAEEIVERDAVHKALM 130 (550)
Q Consensus 68 ~Ai~a~lDLcE-----------Ded~~IR~qaik~Lp~lck~~~e~~~r------iaDVL~QLLqsdd~~E~~~v~~aL~ 130 (550)
-++.+++.|.. ..++.+|..|...|-.+|.++++.-.. ....|++||.++++.....+-.+|.
T Consensus 73 G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~ 152 (354)
T 3nmw_A 73 GGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLR 152 (354)
T ss_dssp THHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCcHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 35666666653 234678999999999999887544222 2678999999988877777777777
Q ss_pred HHHh
Q 008865 131 SLLR 134 (550)
Q Consensus 131 sllk 134 (550)
.|-.
T Consensus 153 nLs~ 156 (354)
T 3nmw_A 153 NLSW 156 (354)
T ss_dssp HHHT
T ss_pred HHhc
Confidence 7754
No 96
>1hu3_A EIF4GII; heat repeat, translation; 2.37A {Homo sapiens} SCOP: a.118.1.14
Probab=71.54 E-value=21 Score=34.90 Aligned_cols=152 Identities=19% Similarity=0.299 Sum_probs=82.5
Q ss_pred HHHHHHHHHhhhcccchHHHHHHHHHHhhccccCCCCchhHHHHHHHHHHHhhcccccCCCCChhhHHHHHHHHHHh-hh
Q 008865 187 ERHITDLIKKSLEDVTGAEFRMFMDFLKSLSLFGEKAPTERMKELIGIIEGQADLDAQFNVSDADHIDRLISCLYMA-LP 265 (550)
Q Consensus 187 Ee~i~~~ikKvL~dVt~~EF~l~m~lL~sL~~~~~~~~~gr~qeLv~~i~eqa~Ld~~f~~sD~d~idRli~cl~~A-lp 265 (550)
-+.+...++-+|..+|.+-|..+..=+..+.+- + ..+++.++++|.++|-....| .....++..++... +|
T Consensus 8 ~~~l~r~v~giLNKLT~~nf~~i~~ql~~~~i~---~-~~~l~~vi~~if~kA~~ep~f----~~~YA~Lc~~L~~~~~p 79 (260)
T 1hu3_A 8 TQELFRKVRSILNKLTPQMFNQLMKQVSGLTVD---T-EERLKGVIDLVFEKAIDEPSF----SVAYANMCRCLVTLKVP 79 (260)
T ss_dssp HHHHHHHHHHHHTCSSCCCHHHHHHHHTTCCCC---S-HHHHHHHHHHHHHHHHHCGGG----HHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCC---C-HHHHHHHHHHHHHHHHcCchH----HHHHHHHHHHHHHhhCC
Confidence 355667777788889999998776655555442 3 256788999999887655544 23456676666542 45
Q ss_pred hhccCCCchhHHHHHHhhhcccCCC--------------C-----Ch-----------------hhhhhHHHHHHHhCCC
Q 008865 266 FFLRGASGSKFLNYLNKHIIPVFDK--------------L-----PE-----------------ERKLDLLKALAEISPY 309 (550)
Q Consensus 266 ~fs~~v~st~f~~y~~~~IlP~l~~--------------L-----~~-----------------~~kl~lLK~lAE~s~~ 309 (550)
.+.....+..|-.++.+..--.|+. + |+ .+-+-..+.++|+-.+
T Consensus 80 ~~~~~~~~~~Fr~~LL~rcq~eFe~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~e~ee~~~~~k~r~lg~i~FIgeLy~~ 159 (260)
T 1hu3_A 80 MADKPGNTVNFRKLLLNRCQKEFEKDKADDDVFEKKQKELEAASAPEERTRLHDELEEAKDKARRRSIGNIKFIGELFKL 159 (260)
T ss_dssp ---------CHHHHHHHHHHHHHHHHTC------------------------------CCSSHHHHHHHHHHHHHHHHTT
T ss_pred cccCCccchHHHHHHHHHHHHHHhcccchhhhHHHHhhhhcccCCHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHHhc
Confidence 4432223344655554433211110 1 11 0235778888888544
Q ss_pred CCchhhhhhhHHHHHHHHhhCCCCCCCCCccchHHHHHHHHHHHHhhhc
Q 008865 310 TTPQDSRQILPSVAVLLKKYMPLRKTGGEEMNFTYVECLLYTFHHLAHK 358 (550)
Q Consensus 310 ~~~~~a~~~l~~i~~~L~~~mP~~~~~~~~l~fS~vEcLL~afh~L~~k 358 (550)
..-...+ +|+.|...+..|.. ..|||+.-.+...|+.
T Consensus 160 --~~l~~~i---~~~~l~~Ll~~~~e-------~~iE~l~~lL~tvG~~ 196 (260)
T 1hu3_A 160 --KMLTEAI---MHDCVVKLLKNHDE-------ESLECLCRLLTTIGKD 196 (260)
T ss_dssp --TCSCHHH---HHHHHHHHHHSCSH-------HHHHHHHHHHHHHHHH
T ss_pred --CCCCHHH---HHHHHHHHhCCCCH-------HHHHHHHHHHHHHHHH
Confidence 1112222 33333333333221 2799999999987765
No 97
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=70.21 E-value=11 Score=40.30 Aligned_cols=66 Identities=18% Similarity=0.126 Sum_probs=47.2
Q ss_pred HHHHhhhhhc-----------ccchhHHHHHhhccccccccCcchhh-----h-HHHHHHHHHhhchhHHHHHHHHHHHH
Q 008865 69 AVDAHLDLIE-----------EEELGVRVQAIRGLPLFCKDTPEYLS-----K-IVDILVQLLAAEEIVERDAVHKALMS 131 (550)
Q Consensus 69 Ai~a~lDLcE-----------Ded~~IR~qaik~Lp~lck~~~e~~~-----r-iaDVL~QLLqsdd~~E~~~v~~aL~s 131 (550)
++..++.|.. ..++.++..|...|-.+|.+++++-. . ....|++||.++++.....+-.+|..
T Consensus 190 ~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~n 269 (458)
T 3nmz_A 190 GLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRN 269 (458)
T ss_dssp HHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCcHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 5666666653 23466899999999999988754422 2 36789999999888777777777766
Q ss_pred HHh
Q 008865 132 LLR 134 (550)
Q Consensus 132 llk 134 (550)
|-.
T Consensus 270 Ls~ 272 (458)
T 3nmz_A 270 LSW 272 (458)
T ss_dssp HTS
T ss_pred Hhc
Confidence 644
No 98
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=69.62 E-value=11 Score=44.03 Aligned_cols=94 Identities=17% Similarity=0.137 Sum_probs=58.8
Q ss_pred hHHHHHhhhhhc-ccchhHHHHHhhccccccccCcchhhhHHHHHHHHHhhchhHHHHHHHHHHHHHHhhchHHHHHHHH
Q 008865 67 SRAVDAHLDLIE-EEELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQLLAAEEIVERDAVHKALMSLLRQDVKASLTALF 145 (550)
Q Consensus 67 e~Ai~a~lDLcE-Ded~~IR~qaik~Lp~lck~~~e~~~riaDVL~QLLqsdd~~E~~~v~~aL~sllk~D~k~tLt~lf 145 (550)
..||..+|..|- |.+..||..|+-+|-.++-.+++.++|+.+. |+++.++..+-.+--||=-+---.|....-.++
T Consensus 576 ~~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~e~v~rlv~~---L~~~~d~~VR~gAalALGli~aGn~~~~aid~L 652 (963)
T 4ady_A 576 NSAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDYTTVPRIVQL---LSKSHNAHVRCGTAFALGIACAGKGLQSAIDVL 652 (963)
T ss_dssp HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSCSSHHHHTTT---GGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHH
T ss_pred HHHHHHHHHHhccCCcHHHHHHHHHHHHhhccCCHHHHHHHHHH---HHhcCCHHHHHHHHHHHHHhccCCCcHHHHHHH
Confidence 456777777764 4556788888888888877777766665554 445777877777777765544334432222344
Q ss_pred HhhccCCCCCChHHHHHHHHHH
Q 008865 146 KHIGSVDEPSTDEFIREKVLSF 167 (550)
Q Consensus 146 ~qI~~~~e~~~eE~vREr~lkF 167 (550)
+.+.. ..++.||.-++-=
T Consensus 653 ~~L~~----D~d~~Vrq~Ai~A 670 (963)
T 4ady_A 653 DPLTK----DPVDFVRQAAMIA 670 (963)
T ss_dssp HHHHT----CSSHHHHHHHHHH
T ss_pred HHHcc----CCCHHHHHHHHHH
Confidence 44442 4456777766643
No 99
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=69.52 E-value=1.8 Score=42.62 Aligned_cols=56 Identities=30% Similarity=0.405 Sum_probs=42.7
Q ss_pred hhhhHHhccCCCcchHHHHHhhhhhcccchhHHHHHhhccccccccCcchhhhHHHHHHHHHhhchhHHHHHHHHH
Q 008865 53 QLIPRFFKFFPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQLLAAEEIVERDAVHKA 128 (550)
Q Consensus 53 QfI~kffk~FP~L~e~Ai~a~lDLcEDed~~IR~qaik~Lp~lck~~~e~~~riaDVL~QLLqsdd~~E~~~v~~a 128 (550)
.=|-+||..-|++ +-.|+.|+|+.||.+|.+.|| .++|.+|++.+++..+..+=.+
T Consensus 42 ~ri~~~~~~~p~l-------~~~ll~d~~~~VR~~AA~~l~-------------~~~l~~L~~D~~~~VR~~aA~~ 97 (244)
T 1lrv_A 42 RQIDRFFRNNPHL-------AVQYLADPFWERRAIAVRYSP-------------VEALTPLIRDSDEVVRRAVAYR 97 (244)
T ss_dssp HHHHHHHHHCGGG-------GGGGTTCSSHHHHHHHHTTSC-------------GGGGGGGTTCSSHHHHHHHHTT
T ss_pred HHHHHHHcCCHHH-------HHHHhcCCCHHHHHHHHHhCC-------------HHHHHHHccCcCHHHHHHHHHH
Confidence 4477888888877 335678999999999999875 2347778888888887777655
No 100
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=69.38 E-value=18 Score=37.39 Aligned_cols=113 Identities=10% Similarity=0.062 Sum_probs=67.6
Q ss_pred ccCCCcch-HHHHHhhhhhcccchhHHHHHhhccccccccCcchhhhHHHHHHHHHhhchhHHHHHHHHHHHHHHhhchH
Q 008865 60 KFFPDLSS-RAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQLLAAEEIVERDAVHKALMSLLRQDVK 138 (550)
Q Consensus 60 k~FP~L~e-~Ai~a~lDLcEDed~~IR~qaik~Lp~lck~~~e~~~riaDVL~QLLqsdd~~E~~~v~~aL~sllk~D~k 138 (550)
.+||++.- ..+-.++.|+-..|..+|+=.|=.+-.+++...|-+ =++--|.+=|++.++-.+-.+=.+|..+..-+-.
T Consensus 59 ~~f~~~e~t~lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~~~e~i-Lv~Nsl~kDl~~~N~~iR~lALRtL~~I~~~~m~ 137 (355)
T 3tjz_B 59 EHLGTTEATEAFFAMTKLFQSNDPTLRRMCYLTIKEMSCIAEDVI-IVTSSLTKDMTGKEDSYRGPAVRALCQITDSTML 137 (355)
T ss_dssp CCCCHHHHHHHHHHHHGGGGCCCHHHHHHHHHHHHHHTTTSSCGG-GGHHHHHHHHHSSCHHHHHHHHHHHHHHCCTTTH
T ss_pred CCCchhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCHHHHH-HHHHHHHhhcCCCcHhHHHHHHHHHhcCCCHHHH
Confidence 46776553 455667778888888888877777777777655544 6777777777777666555555555555444444
Q ss_pred HHHHHHHHhhccCCCCCChHHHHHHHHHHHhhhcccchhh
Q 008865 139 ASLTALFKHIGSVDEPSTDEFIREKVLSFIRDKVFPLKAE 178 (550)
Q Consensus 139 ~tLt~lf~qI~~~~e~~~eE~vREr~lkFl~~kl~~l~~e 178 (550)
..+..-+.+... +.+.-||..++=- ..||.+.-++
T Consensus 138 ~~l~~~lk~~L~----d~~pyVRk~A~l~-~~kL~~~~pe 172 (355)
T 3tjz_B 138 QAIERYMKQAIV----DKVPSVSSSALVS-SLHLLKCSFD 172 (355)
T ss_dssp HHHHHHHHHHHT----CSSHHHHHHHHHH-HHHHTTTCHH
T ss_pred HHHHHHHHHHcC----CCCHHHHHHHHHH-HHHHhccCHH
Confidence 555555555553 3334566554422 2255555333
No 101
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=67.80 E-value=15 Score=35.77 Aligned_cols=66 Identities=20% Similarity=0.195 Sum_probs=49.3
Q ss_pred HHHhhhhhcccch--hHHHHHhhccccccccCcchhhh-----HHHHHHHHHhhchhHHHHHHHHHHHHHHhh
Q 008865 70 VDAHLDLIEEEEL--GVRVQAIRGLPLFCKDTPEYLSK-----IVDILVQLLAAEEIVERDAVHKALMSLLRQ 135 (550)
Q Consensus 70 i~a~lDLcEDed~--~IR~qaik~Lp~lck~~~e~~~r-----iaDVL~QLLqsdd~~E~~~v~~aL~sllk~ 135 (550)
|..++.+...+|+ +++..|...|-.+|..+++.... .+-.|++||.++++.....+-.+|..|-.-
T Consensus 10 i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~ 82 (233)
T 3tt9_A 10 LERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFE 82 (233)
T ss_dssp HHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhC
Confidence 4556666666666 88888889999999887666444 456799999998887777777777777653
No 102
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=65.54 E-value=1.1e+02 Score=31.55 Aligned_cols=96 Identities=18% Similarity=0.140 Sum_probs=68.1
Q ss_pred hHHHHHHHhc-CCHHHHHHHhhhhhHHhccCCCcchH-----HHHHhhhhhcccchhHHHHHhhcccccccc--------
Q 008865 33 DYEGIIEAAK-TSLKAKQLAAQLIPRFFKFFPDLSSR-----AVDAHLDLIEEEELGVRVQAIRGLPLFCKD-------- 98 (550)
Q Consensus 33 ~y~~Il~~~K-gs~k~K~LAaQfI~kffk~FP~L~e~-----Ai~a~lDLcEDed~~IR~qaik~Lp~lck~-------- 98 (550)
.=+.|++... ++.++++-|=.-+.++|..-++++.+ -++++++.+++.+-++..-++++|-++=-.
T Consensus 119 ra~~iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~gvv 198 (339)
T 3dad_A 119 RVNAILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDGMLGVV 198 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHHHH
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhccccccchh
Confidence 4455666555 77888988888888888877887765 567999999999999998888888777432
Q ss_pred -CcchhhhHHHHHHHHHhhchhHHHHHHHHHHHHHHhh
Q 008865 99 -TPEYLSKIVDILVQLLAAEEIVERDAVHKALMSLLRQ 135 (550)
Q Consensus 99 -~~e~~~riaDVL~QLLqsdd~~E~~~v~~aL~sllk~ 135 (550)
+++ .+.-|+.++.+ ..+.+++.||.=|+.+
T Consensus 199 s~~~----fI~~lyslv~s---~~~~V~k~AL~LL~v~ 229 (339)
T 3dad_A 199 AHSD----TIQWLYTLCAS---LSRLVVKTALKLLLVF 229 (339)
T ss_dssp HCHH----HHHHHHHGGGC---SCHHHHHHHHHHHHHH
T ss_pred CCHH----HHHHHHHHHcC---ccHHHHHHHHHHHHHH
Confidence 333 44445566665 4466676666555444
No 103
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=62.66 E-value=1.3e+02 Score=35.65 Aligned_cols=289 Identities=15% Similarity=0.172 Sum_probs=137.2
Q ss_pred HHHHhhhhhccc---chh--HHH---HHhhccccccccCcchhhhHHHHHHHHHhhchhHHHHHHHHHHHHHHhhchHHH
Q 008865 69 AVDAHLDLIEEE---ELG--VRV---QAIRGLPLFCKDTPEYLSKIVDILVQLLAAEEIVERDAVHKALMSLLRQDVKAS 140 (550)
Q Consensus 69 Ai~a~lDLcEDe---d~~--IR~---qaik~Lp~lck~~~e~~~riaDVL~QLLqsdd~~E~~~v~~aL~sllk~D~k~t 140 (550)
-|.-++.|||.. |.. ||. ..+-..|.+-+.+++|+.-+..-|...++...+...+++-.||..+-.-=
T Consensus 522 vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~h~~~L~~vl~~L~~~m~~~~~~vq~aA~~af~~i~~~C---- 597 (1073)
T 3gjx_A 522 VIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAHWKFLKTVVNKLFEFMHETHDGVQDMACDTFIKIAQKC---- 597 (1073)
T ss_dssp HHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHTTCCSTTHHHHHHHHHHHHHHHT----
T ss_pred HHHHHhcccccccccchhHHHHHHHHHHHhhhHHHHHhCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH----
Confidence 355778888754 333 333 24456777777888888888888878777777777777766665544321
Q ss_pred HHHHHHhhccCCCCCChHHHHHHHHHHHhhhcccchhhhcCChHHHHHHHHHHHHhhhcccchHH-HHHHHHHHhhcccc
Q 008865 141 LTALFKHIGSVDEPSTDEFIREKVLSFIRDKVFPLKAELLKPQEEMERHITDLIKKSLEDVTGAE-FRMFMDFLKSLSLF 219 (550)
Q Consensus 141 Lt~lf~qI~~~~e~~~eE~vREr~lkFl~~kl~~l~~e~l~~~eE~Ee~i~~~ikKvL~dVt~~E-F~l~m~lL~sL~~~ 219 (550)
......-.+.+.+.-=+.++.++..-...+ ..+....+.+.|--++..+..++ -..+|+.|-..+.
T Consensus 598 -----~~~lv~~~~~e~~p~i~~il~~~~~~~~~l-------~~~~~~~lyeav~~vi~~~p~~~~~~~~i~~Lm~~~~- 664 (1073)
T 3gjx_A 598 -----RRHFVQVQVGEVMPFIDEILNNINTIICDL-------QPQQVHTFYEAVGYMIGAQTDQTVQEHLIEKYMLLPN- 664 (1073)
T ss_dssp -----GGGGTSCCTTCSSCHHHHHHTSHHHHHTTC-------CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTHHHH-
T ss_pred -----HHHHhhccccccchHHHHHHHHHHHHHHhc-------CHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHH-
Confidence 111000000111112233333333221121 23444555666666666666554 2334443332222
Q ss_pred CCCCchhHHHHHHHHHHHhhcccccCCCCChhhHHHHHHHHHHhhhhhccCCCchhHHHHHHhhhccc-------CC---
Q 008865 220 GEKAPTERMKELIGIIEGQADLDAQFNVSDADHIDRLISCLYMALPFFLRGASGSKFLNYLNKHIIPV-------FD--- 289 (550)
Q Consensus 220 ~~~~~~gr~qeLv~~i~eqa~Ld~~f~~sD~d~idRli~cl~~Alp~fs~~v~st~f~~y~~~~IlP~-------l~--- 289 (550)
.+.+++++-.....+ ...|++.++++...++.-....+ .-+..|+.++.. |+|. ++
T Consensus 665 ------~~w~~l~~~~~~~~~-----~~~d~~~i~~l~~il~~n~~v~~--~~g~~f~~~~~~-i~~~~l~~y~~~s~~i 730 (1073)
T 3gjx_A 665 ------QVWDSIIQQATKNVD-----ILKDPETVKQLGSILKTNVRACK--AVGHPFVIQLGR-IYLDMLNVYKCLSENI 730 (1073)
T ss_dssp ------HHHHHHHHHHHHCGG-----GGGCHHHHHHHHHHHHHHHHHHH--HHCGGGHHHHHH-HHHHHHHHHHHHHHHH
T ss_pred ------HHHHHHHHHhhcCch-----hccChHHHHHHHHHHhhhHHHHh--hcchhHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 122333322211111 12477778887776663211111 112455554432 3331 11
Q ss_pred ------------CCCh-----hhhhhHHHHHHHhCCCC-Cchh-hhhhhHHHHHHHHh-hCCCCCC-CCCccchHHHHHH
Q 008865 290 ------------KLPE-----ERKLDLLKALAEISPYT-TPQD-SRQILPSVAVLLKK-YMPLRKT-GGEEMNFTYVECL 348 (550)
Q Consensus 290 ------------~L~~-----~~kl~lLK~lAE~s~~~-~~~~-a~~~l~~i~~~L~~-~mP~~~~-~~~~l~fS~vEcL 348 (550)
+-|. ..|-++||++--....+ +.+. +..++|++++.++. |.-..|. -++ |.
T Consensus 731 ~~~v~~~g~~~~~~~~~~~~r~ik~eil~l~~~~i~~~~~~~~v~~~~i~pl~~~vl~dY~~~~p~~r~~--------ev 802 (1073)
T 3gjx_A 731 SAAIQANGEMVTKQPLIRSMRTVKRETLKLISGWVSRSNDPQMVAENFVPPLLDAVLIDYQRNVPAAREP--------EV 802 (1073)
T ss_dssp HHHHHHHCGGGGSSHHHHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHTSHHHHHHTHHHHHHSCGGGCCT--------HH
T ss_pred HHHHHhCCchhhccHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHhHHHHHHHHHHHHhcCCcccccH--------HH
Confidence 1111 13556666766654444 3333 78889998877665 5532221 011 44
Q ss_pred HHHHHHhhhcCch--------hhhhc--cCcccccCCCCCccCcChhhhHHHHHHHHHHHHHH
Q 008865 349 LYTFHHLAHKAPN--------ATNSL--CGYKIVTGQPSDRLGEDFSDCYKDFTERLTTVEDL 401 (550)
Q Consensus 349 L~afh~L~~k~p~--------~l~~~--cg~k~~Tgqpsd~lgeD~~~~~kdFr~RLqyl~~~ 401 (550)
|+.+..+..|... .|..+ |-...++. +-+|+++.-.+|-.=|+.+...
T Consensus 803 L~l~s~iv~k~~~~~~~~~~~il~~vf~~Tl~mi~~-----~f~~~Pe~r~~ff~ll~~~~~~ 860 (1073)
T 3gjx_A 803 LSTMAIIVNKLGGHITAEIPQIFDAVFECTLNMINK-----DFEEYPEHRTNFFLLLQAVNSH 860 (1073)
T ss_dssp HHHHHHHHHHHGGGTGGGHHHHHHHHHHHHHHHHSS-----CSSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHhC-----CcccCcHHHHHHHHHHHHHHHH
Confidence 5555555555222 22222 11112221 1246777777776666655444
No 104
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=62.21 E-value=12 Score=41.35 Aligned_cols=97 Identities=16% Similarity=0.163 Sum_probs=70.8
Q ss_pred cchHHHHHhhhhhcccchhHHHHHhhccccccccCcchhhhH-----HHHHHHHHhhchhHHHHHHHHHHHHHHhh---c
Q 008865 65 LSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKI-----VDILVQLLAAEEIVERDAVHKALMSLLRQ---D 136 (550)
Q Consensus 65 L~e~Ai~a~lDLcEDed~~IR~qaik~Lp~lck~~~e~~~ri-----aDVL~QLLqsdd~~E~~~v~~aL~sllk~---D 136 (550)
..+.+|..++.+....|+.++..|...|-.+|..++++...| +-.|++||.++++.....+-.+|..|-.. +
T Consensus 45 ~~~~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~ 124 (584)
T 3l6x_A 45 WRQPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQD 124 (584)
T ss_dssp CCCCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHH
T ss_pred cccccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHH
Confidence 355678888888888899999999999999998877764444 46799999999988888888888888763 2
Q ss_pred hH------HHHHHHHHhhccCCCCCChHHHHHHHH
Q 008865 137 VK------ASLTALFKHIGSVDEPSTDEFIREKVL 165 (550)
Q Consensus 137 ~k------~tLt~lf~qI~~~~e~~~eE~vREr~l 165 (550)
.+ |.+..|...+.+ ..+..+++.+.
T Consensus 125 nk~~I~~~GaIp~LV~LL~s----~~~~~~~e~aa 155 (584)
T 3l6x_A 125 NKIAIKNCDGVPALVRLLRK----ARDMDLTEVIT 155 (584)
T ss_dssp HHHHHHHTTHHHHHHHHHHH----CCSHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHcC----CCCHHHHHHHH
Confidence 32 345556666652 13445555543
No 105
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=61.63 E-value=1.1e+02 Score=29.06 Aligned_cols=63 Identities=19% Similarity=0.228 Sum_probs=40.1
Q ss_pred hhhHHHHHHHHHHhhhhhc-cCCCchhHHHHHHhhhcccCCCCChhhhhhHHHHHHHhCCCCCc
Q 008865 250 ADHIDRLISCLYMALPFFL-RGASGSKFLNYLNKHIIPVFDKLPEERKLDLLKALAEISPYTTP 312 (550)
Q Consensus 250 ~d~idRli~cl~~Alp~fs-~~v~st~f~~y~~~~IlP~l~~L~~~~kl~lLK~lAE~s~~~~~ 312 (550)
|-..--.+.++..++.-|. ..++...++..++..+.+.|++-..+.|-.-.+++.++-.+.|+
T Consensus 153 pkv~~~~l~~l~~~l~~fg~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~~G~ 216 (278)
T 4ffb_C 153 PKLIAAAANCVYELMAAFGLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKVTGN 216 (278)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC---
T ss_pred HHHHHHHHHHHHHHHHHhCCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCc
Confidence 3333334455555555553 33445677788887777788877777888888888888777764
No 106
>3s4w_B Protein FACD2, fanconi anemia group D2 protein homolog; DNA repair, DNA binding protein; 3.41A {Mus musculus}
Probab=61.15 E-value=27 Score=42.22 Aligned_cols=52 Identities=17% Similarity=0.226 Sum_probs=43.4
Q ss_pred chHHHHHhhhhhcccchhHHHHHhhccccccccCcchhhhHHHHHHHHHhhchh
Q 008865 66 SSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQLLAAEEI 119 (550)
Q Consensus 66 ~e~Ai~a~lDLcEDed~~IR~qaik~Lp~lck~~~e~~~riaDVL~QLLqsdd~ 119 (550)
.++..+.++++.+---..++...|-.||+|+-|. + .+.+++.|.+||+.+..
T Consensus 155 ~~~l~~ki~~vl~vap~~lQ~diI~sLPeIl~ds-~-H~~v~~~L~~lL~~~~~ 206 (1323)
T 3s4w_B 155 GKDLTAQMMQLISVAPVNLQHDFITSLPEILGDS-Q-HANVGKELGELLVQNTS 206 (1323)
T ss_dssp HHHHHHHHHHHHHHSCTTTHHHHHHTHHHHSCGG-G-HHHHHHHHHHHHHHCST
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHhHHHhcch-h-hHHHHHHHHHHHhcCcc
Confidence 4777888888887777789999999999999886 3 46899999999998653
No 107
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=60.44 E-value=13 Score=41.70 Aligned_cols=115 Identities=24% Similarity=0.263 Sum_probs=83.5
Q ss_pred HHHhhhhhHHhccCCCcchHHHHHhhhhhcccchhHHHHHhhccccccccCcch-------hhhHHHHHHHHHhhchhHH
Q 008865 49 QLAAQLIPRFFKFFPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEY-------LSKIVDILVQLLAAEEIVE 121 (550)
Q Consensus 49 ~LAaQfI~kffk~FP~L~e~Ai~a~lDLcEDed~~IR~qaik~Lp~lck~~~e~-------~~riaDVL~QLLqsdd~~E 121 (550)
.++.+|.--|-+ ..+.|..+++|.+.+|-.||..|++=|-.+|..+|+- .+-.+-.|+.+|.++-..-
T Consensus 108 ~~~~~~~d~f~~-----~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~i 182 (651)
T 3grl_A 108 DLGSQFTEIFIK-----QQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVI 182 (651)
T ss_dssp CHHHHHHHHHHH-----STHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHH
T ss_pred HHHHHHHHHHHc-----CCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHH
Confidence 455566555554 3688999999999999999999999999999999882 2245667888888776666
Q ss_pred HHHHHHHHHHHHhhchH--------HHHHHHHHhhccCCCCCChHHHHHHHHHHHh
Q 008865 122 RDAVHKALMSLLRQDVK--------ASLTALFKHIGSVDEPSTDEFIREKVLSFIR 169 (550)
Q Consensus 122 ~~~v~~aL~sllk~D~k--------~tLt~lf~qI~~~~e~~~eE~vREr~lkFl~ 169 (550)
++.+---|..|-+.++. +++..||+=|.. +.+.+...+=+.|+..|.
T Consensus 183 RneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~-Eg~~~Ggivv~DCL~ll~ 237 (651)
T 3grl_A 183 RNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITE-EGNSDGGIVVEDCLILLQ 237 (651)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHH-HTGGGSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHh-cCCCccchhHHHHHHHHH
Confidence 77777778888887766 888888888862 111112245566666544
No 108
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=59.93 E-value=2.6e+02 Score=32.67 Aligned_cols=73 Identities=14% Similarity=0.097 Sum_probs=40.2
Q ss_pred ChhhHHHHHHHHHHhhhhhccC-CCchhHHHHHHhhhcccCCCCChhhhhhHHHHHHHhCCC-C-Cch-hhhhhhHHHHH
Q 008865 249 DADHIDRLISCLYMALPFFLRG-ASGSKFLNYLNKHIIPVFDKLPEERKLDLLKALAEISPY-T-TPQ-DSRQILPSVAV 324 (550)
Q Consensus 249 D~d~idRli~cl~~Alp~fs~~-v~st~f~~y~~~~IlP~l~~L~~~~kl~lLK~lAE~s~~-~-~~~-~a~~~l~~i~~ 324 (550)
+++.+...+.|+..-+..+.-+ +.++.++.+++++.++ .++.+.-.+.+|.|+... + ++. ...+.+..+|+
T Consensus 208 ~~~l~~~~L~~l~s~l~WI~i~~i~~~~ll~~l~~~~L~-----~~~~r~~A~ecL~eIv~~~~~~~~~~~~~~l~~lf~ 282 (1023)
T 4hat_C 208 SSSLIVATLESLLRYLHWIPYRYIYETNILELLSTKFMT-----SPDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFFQ 282 (1023)
T ss_dssp SCHHHHHHHHHHHHHTTTSCTHHHHSSSHHHHHHTHHHH-----SHHHHHHHHHHHHHHHTSCCCSSCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhCCHHHhcchhHHHHHHHHHcC-----CHHHHHHHHHHHHHHHccccCCchHHHHHHHHHHHH
Confidence 4455666667776665554322 2235677777755553 235566678888888653 3 221 23344444444
Q ss_pred HH
Q 008865 325 LL 326 (550)
Q Consensus 325 ~L 326 (550)
.+
T Consensus 283 ~~ 284 (1023)
T 4hat_C 283 NT 284 (1023)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 109
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=59.16 E-value=60 Score=31.70 Aligned_cols=96 Identities=16% Similarity=0.207 Sum_probs=54.8
Q ss_pred CCHHHHHHHhhhhhHHhccCCCcchHHHHHhhhhhcccchhHHHHHhhccccccccCcchhhhHHHHHHHHHhhchhHHH
Q 008865 43 TSLKAKQLAAQLIPRFFKFFPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQLLAAEEIVER 122 (550)
Q Consensus 43 gs~k~K~LAaQfI~kffk~FP~L~e~Ai~a~lDLcEDed~~IR~qaik~Lp~lck~~~e~~~riaDVL~QLLqsdd~~E~ 122 (550)
|++|.|.=-+--.-+--+-.|+|....+.-++.+.++-|..=|..|+-=|.-+..++++|+.-.-+=|-.||-.+|...+
T Consensus 119 gd~kikIn~~yaLeeIaranP~l~~~v~rdi~smltskd~~Dkl~aLnFi~alGen~~~yv~PfLprL~aLL~D~deiVR 198 (253)
T 2db0_A 119 GDEKTKINVSYALEEIAKANPMLMASIVRDFMSMLSSKNREDKLTALNFIEAMGENSFKYVNPFLPRIINLLHDGDEIVR 198 (253)
T ss_dssp CSHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTSCSSHHHHHHHHHHHHTCCTTTHHHHGGGHHHHHGGGGCSSHHHH
T ss_pred CCccceecHHHHHHHHHHhChHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccCccccCcchHHHHHHHcCcchhhh
Confidence 55555555555555555555666555555555555555544455555555555555556555555555555555555555
Q ss_pred HHHHHHHHHHHhhchH
Q 008865 123 DAVHKALMSLLRQDVK 138 (550)
Q Consensus 123 ~~v~~aL~sllk~D~k 138 (550)
..+-.+|..+-..+||
T Consensus 199 aSaVEtL~~lA~~npk 214 (253)
T 2db0_A 199 ASAVEALVHLATLNDK 214 (253)
T ss_dssp HHHHHHHHHHHTSCHH
T ss_pred HHHHHHHHHHHHcCHH
Confidence 5555555555555555
No 110
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=58.36 E-value=8.1 Score=45.20 Aligned_cols=101 Identities=18% Similarity=0.147 Sum_probs=71.2
Q ss_pred cChhhHHHHHHHhc--CCHHHHHHHhhhhhHH-hccCCCcchHHHHHhhh-hhcccchhHHHHHhhccccccccCcchhh
Q 008865 29 QNVKDYEGIIEAAK--TSLKAKQLAAQLIPRF-FKFFPDLSSRAVDAHLD-LIEEEELGVRVQAIRGLPLFCKDTPEYLS 104 (550)
Q Consensus 29 ~~~~~y~~Il~~~K--gs~k~K~LAaQfI~kf-fk~FP~L~e~Ai~a~lD-LcEDed~~IR~qaik~Lp~lck~~~e~~~ 104 (550)
.++...+.+|.-.. .+..+++-|.--|..- +.. | +++..+++ |.++.|+.||..|.-+|-.+|-.||. .
T Consensus 574 Gn~~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~-~----e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~--~ 646 (963)
T 4ady_A 574 GNNSAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRD-Y----TTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGL--Q 646 (963)
T ss_dssp CCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSS-C----SSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCC--H
T ss_pred CCHHHHHHHHHHhccCCcHHHHHHHHHHHHhhccCC-H----HHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCc--H
Confidence 34455555554322 4556666666555532 232 3 35666676 67789999999999999999999984 7
Q ss_pred hHHHHHHHHHhhchhHHHHHHHHHHHHHHhhc
Q 008865 105 KIVDILVQLLAAEEIVERDAVHKALMSLLRQD 136 (550)
Q Consensus 105 riaDVL~QLLqsdd~~E~~~v~~aL~sllk~D 136 (550)
+++|+|..|+...|...+..+--||-.+....
T Consensus 647 ~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~gt 678 (963)
T 4ady_A 647 SAIDVLDPLTKDPVDFVRQAAMIALSMILIQQ 678 (963)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHccCCCHHHHHHHHHHHHHHhcCC
Confidence 89999999998888777777766766666553
No 111
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=55.69 E-value=87 Score=31.32 Aligned_cols=105 Identities=11% Similarity=0.038 Sum_probs=82.4
Q ss_pred cChhhHHHHHHHh----c-CCHHHHHHHhhhhhHHhccCCCcchHHHHHhhhhhcccchhHHHHHhhccccccc--cCcc
Q 008865 29 QNVKDYEGIIEAA----K-TSLKAKQLAAQLIPRFFKFFPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCK--DTPE 101 (550)
Q Consensus 29 ~~~~~y~~Il~~~----K-gs~k~K~LAaQfI~kffk~FP~L~e~Ai~a~lDLcEDed~~IR~qaik~Lp~lck--~~~e 101 (550)
-+.+.|..++.+. | +++-.-.-||....+- .=-++...-+|.++.|.+..|..+...|++.|-.+.- ++|+
T Consensus 108 L~~~~y~Kl~~aL~dlik~~~~il~~eaae~Lgkl--kv~~~~~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~D~~ 185 (265)
T 3b2a_A 108 MGSKTFLKAAKTLVSLLESPDDMMRIETIDVLSKL--QPLEDSKLVRTYINELVVSPDLYTKVAGFCLFLNMLNSSADSG 185 (265)
T ss_dssp BCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHC--CBSCCCHHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCSSCC
T ss_pred CCHHHHHHHHHHHHHHhcCCCchHHHHHHHHhCcC--CcccchHHHHHHHHHHHhCCChhHHHHHHHHHHHhhcccCCHH
Confidence 3566676666543 3 5666667788887777 5667789999999999999999999999998877765 5678
Q ss_pred hhhhHHHHHHHHHhhchhHHHHHHHHHHHHHHhh
Q 008865 102 YLSKIVDILVQLLAAEEIVERDAVHKALMSLLRQ 135 (550)
Q Consensus 102 ~~~riaDVL~QLLqsdd~~E~~~v~~aL~sllk~ 135 (550)
++..|.|=+.-||+++|+.-++.+=.+|-.+++.
T Consensus 186 i~~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~ 219 (265)
T 3b2a_A 186 HLTLILDEIPSLLQNDNEFIVELALDVLEKALSF 219 (265)
T ss_dssp CGGGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence 9999999999999999988777766666666554
No 112
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=52.30 E-value=2.4e+02 Score=32.29 Aligned_cols=248 Identities=11% Similarity=0.075 Sum_probs=125.5
Q ss_pred HHHHHhhhhhcccchhHHHHHhhccccccc----------cCcchhhhHHHHHHHHHhhc--------hh----------
Q 008865 68 RAVDAHLDLIEEEELGVRVQAIRGLPLFCK----------DTPEYLSKIVDILVQLLAAE--------EI---------- 119 (550)
Q Consensus 68 ~Ai~a~lDLcEDed~~IR~qaik~Lp~lck----------~~~e~~~riaDVL~QLLqsd--------d~---------- 119 (550)
..++.++.++..+|..|+..++.=+..+|. --..+++++.+++.+.|.-+ |+
T Consensus 344 ~~l~~ll~~~~~~d~~v~~~~lefw~~l~~~l~~~~~~~~~~~~~l~~Lv~~ll~~m~~~ed~~~~~dd~~e~~r~~~~d 423 (1049)
T 3m1i_C 344 NAHQYLIQLSKIEERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKE 423 (1049)
T ss_dssp HHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHSTTCGGGGHHHHHHHHHHHHHTCCCCTTCCEEECTTSCEEECSSCC
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhcCCCcceeeeeCCCCcchHhhhcc
Confidence 356666667777788888888865555544 22356777777777766321 11
Q ss_pred ----HHHHHHHHHHHHHHhhchHHHHHHHHHhhccCCC-CCChHHHHHHHHHHHhhhcccchhhhcCChHHHHHHHHHHH
Q 008865 120 ----VERDAVHKALMSLLRQDVKASLTALFKHIGSVDE-PSTDEFIREKVLSFIRDKVFPLKAELLKPQEEMERHITDLI 194 (550)
Q Consensus 120 ----~E~~~v~~aL~sllk~D~k~tLt~lf~qI~~~~e-~~~eE~vREr~lkFl~~kl~~l~~e~l~~~eE~Ee~i~~~i 194 (550)
..+..+...|..+.+..+..++..++..+...-. +..+=..||-++--+. .+.. .+ .++.+..++..+
T Consensus 424 ~d~~~~~~~~~~~L~~l~~~~~~~~l~~v~~~l~~~l~~~~~~W~~~eaal~alg----sia~-~~--~~~~e~~~l~~v 496 (1049)
T 3m1i_C 424 SDTIQLYKSEREVLVYLTHLNVIDTEEIMISKLARQIDGSEWSWHNINTLSWAIG----SISG-TM--SEDTEKRFVVTV 496 (1049)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHH----HTTT-SS--CHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH----HHhc-cc--CchhhHHHHHHH
Confidence 2245788889999999988888877766542100 1112234565443322 2211 11 123232322222
Q ss_pred Hhhhcccc----h-HH-H--H-HHHHHHhhccccCCCCchhHHHHHHHHHHHhhcccccCCCCCh-------hhHHHHHH
Q 008865 195 KKSLEDVT----G-AE-F--R-MFMDFLKSLSLFGEKAPTERMKELIGIIEGQADLDAQFNVSDA-------DHIDRLIS 258 (550)
Q Consensus 195 kKvL~dVt----~-~E-F--~-l~m~lL~sL~~~~~~~~~gr~qeLv~~i~eqa~Ld~~f~~sD~-------d~idRli~ 258 (550)
...|.... + .. . . .+|.++.....+-...| .....++..+.+- |.. .++ ..+.+|.+
T Consensus 497 ~~~l~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~~-~~l~~vl~~ll~~--l~~----~~~~V~~~A~~al~~l~~ 569 (1049)
T 3m1i_C 497 IKDLLDLTVKKRGKDNKAVVASDIMYVVGQYPRFLKAHW-NFLRTVILKLFEF--MHE----THEGVQDMACDTFIKIVQ 569 (1049)
T ss_dssp HHHHHHHTTSSCSHHHHHHHHHHHHHHHHHCHHHHHHCH-HHHHHHHHHHHHH--TTS----SCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHhHH-HHHHHHHHHHHHH--hcC----CCHHHHHHHHHHHHHHHH
Confidence 22221111 0 11 1 1 24555554443311122 2234455544442 221 122 12333433
Q ss_pred HHHHhhhhhccCCCchhHHHHHHhhhcccCCCCChhhhhhHHHHHHHhCCCCCc-hh----hhhhhHHHHHHHHhhC
Q 008865 259 CLYMALPFFLRGASGSKFLNYLNKHIIPVFDKLPEERKLDLLKALAEISPYTTP-QD----SRQILPSVAVLLKKYM 330 (550)
Q Consensus 259 cl~~Alp~fs~~v~st~f~~y~~~~IlP~l~~L~~~~kl~lLK~lAE~s~~~~~-~~----a~~~l~~i~~~L~~~m 330 (550)
-....+.- .......+|+.-+.+++...+++++.+....+.+.++.++...+. +. ...+++.+.+.+...+
T Consensus 570 ~~~~~l~~-~~~~~~~p~~~~il~~l~~~~~~~~~~~~~~~~eai~~ii~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 645 (1049)
T 3m1i_C 570 KCKYHFVI-QQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEERSVAERNRLLSDLMQLPNMAWDTIV 645 (1049)
T ss_dssp HHTHHHHS-CCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred HHHHHhhc-ccCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 21111100 111112488888888888888888877788888998888765552 22 3444555555555444
No 113
>4fu3_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, domain swapping, transc; HET: MSE; 1.90A {Homo sapiens} PDB: 4fld_A*
Probab=50.38 E-value=14 Score=32.34 Aligned_cols=50 Identities=18% Similarity=0.224 Sum_probs=39.5
Q ss_pred chHHHHHhhhhhcccchhHHHHHhhccccccccCcchhhhHHHHHHHHHhhchhH
Q 008865 66 SSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQLLAAEEIV 120 (550)
Q Consensus 66 ~e~Ai~a~lDLcEDed~~IR~qaik~Lp~lck~~~e~~~riaDVL~QLLqsdd~~ 120 (550)
.++++...|+=+... .+.|..+..+|.++.+|-..|++++.+.+....+.
T Consensus 5 ~~~~l~~~L~~L~~s-----~~sI~~~s~w~l~~~~~a~~iv~~i~~~l~~~~~~ 54 (135)
T 4fu3_A 5 SESALEKKLSELSNS-----QQSVQTLSLWLIHHRKHAGPIVSVWHRELRKAKSN 54 (135)
T ss_dssp CHHHHHHHHHHCCSS-----TTHHHHHHHHHHHTGGGHHHHHHHHHHHHHHSCTT
T ss_pred CHHHHHHHHHHcccc-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 567888888766432 36678889999999999999999999998876653
No 114
>3hjl_A Flagellar motor switch protein FLIG; armadillo repeat motif, superhelix, conformational plasticit repeat, torque generation; 2.40A {Aquifex aeolicus}
Probab=48.12 E-value=2.2e+02 Score=29.08 Aligned_cols=143 Identities=15% Similarity=0.201 Sum_probs=86.9
Q ss_pred hccccc-cChhhH-HHHHHHhcCCHHHHHHHhhhhhHH-hccCCCcchHHHHHhhhhhcccchh----------------
Q 008865 23 EAKDKS-QNVKDY-EGIIEAAKTSLKAKQLAAQLIPRF-FKFFPDLSSRAVDAHLDLIEEEELG---------------- 83 (550)
Q Consensus 23 ~akd~~-~~~~~y-~~Il~~~Kgs~k~K~LAaQfI~kf-fk~FP~L~e~Ai~a~lDLcEDed~~---------------- 83 (550)
.+.... ..- +| +.+|..+=|..+++.|-.++.+.- .+-|..|+.---..+.++..+|-++
T Consensus 69 ~~~~~i~~gg-~~~~~~L~~aLg~~~A~~ll~~i~~~~~~~~~~~L~~~dp~~la~~i~~EhPQtiAlILs~L~p~~AA~ 147 (329)
T 3hjl_A 69 KKAGIKIKKP-EEFIENIKKVIPPTLAEKFRGILELGDAEKILKEIEKVDSRILASLLKNEHPQTIALFLSQLSPKKSAE 147 (329)
T ss_dssp HHTTCCCSCH-HHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHTTSCHHHHHHHHTTSCHHHHHH
T ss_pred HhcCCCCCch-HHHHHHHHHhCCHHHHHHHHHHHhccccCCHHHHHHCCCHHHHHHHHHhCCHHHHHHHHHcCCHHHHHH
Confidence 344332 444 55 789999999999887776655431 2335555555556678888888887
Q ss_pred --------HHHHHhhccccccccCcchhhhHHHHHHHHHhhchhHHHH--HHHHHHHHHHhhchHHHHHHHHHhhccCCC
Q 008865 84 --------VRVQAIRGLPLFCKDTPEYLSKIVDILVQLLAAEEIVERD--AVHKALMSLLRQDVKASLTALFKHIGSVDE 153 (550)
Q Consensus 84 --------IR~qaik~Lp~lck~~~e~~~riaDVL~QLLqsdd~~E~~--~v~~aL~sllk~D~k~tLt~lf~qI~~~~e 153 (550)
+|..-++-+-.+-.=+|+-+..|.++|-..|.+-...... -=.+.+..+|..=.+++-..++..|.. ..
T Consensus 148 vL~~Lp~~~r~ev~~Ria~l~~v~p~~l~~le~~L~~~l~~~~~~~~~~~gG~~~vA~ILN~~d~~~e~~il~~L~~-~d 226 (329)
T 3hjl_A 148 IIQNLPEELKKEVVKRIATLENVNVQYVKELAQILLEEISSLGAKEALKLEGTAVAAELLNTLDKETRELILQSIGQ-ED 226 (329)
T ss_dssp HHHTSCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHHSCHHHHHHHHHHHHH-HC
T ss_pred HHHhCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHhcccccccccccHHHHHHHHhcCChHHHHHHHHHHHH-hC
Confidence 5666666666777777777888888887666553222111 013445577777667777777777762 01
Q ss_pred CCChHHHHHHHHHH
Q 008865 154 PSTDEFIREKVLSF 167 (550)
Q Consensus 154 ~~~eE~vREr~lkF 167 (550)
|.--+.+|+++..|
T Consensus 227 pela~~Ir~~MF~F 240 (329)
T 3hjl_A 227 PLLEERIREKMFTF 240 (329)
T ss_dssp HHHHHHHHHHHSCG
T ss_pred HHHHHHHHHHhcCH
Confidence 11112356666555
No 115
>1wj7_A Hypothetical protein (RSGI RUH-015); UBA domain, ubiquitin associated domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.5.2.1
Probab=45.02 E-value=26 Score=30.45 Aligned_cols=34 Identities=21% Similarity=0.326 Sum_probs=27.9
Q ss_pred hhhhhhhc-cHHHHhhhhhcCCCCccCCCcccccccccCCCC
Q 008865 440 TTGLRTCN-NILAMSKPLHSKTPSFIGDKSVNLSWKEATKPS 480 (550)
Q Consensus 440 ~~aL~~~~-NI~~li~~l~~~pPsf~~~~~i~lSW~~~~k~~ 480 (550)
+.||..|+ ++...|..|+.+. ..+-+|.++.|+.
T Consensus 58 r~AL~~~ngDl~~AI~~Lleg~-------~~~~~W~~~~kKk 92 (104)
T 1wj7_A 58 VIALHDCNGDVNRAINVLLEGN-------PDTHSWEMVGKKK 92 (104)
T ss_dssp HHHHHHHTSCHHHHHHHHHTCS-------SSCSSCSSCCCCC
T ss_pred HHHHHHcCCCHHHHHHHHHhCC-------CcCCceeeecccc
Confidence 36899999 9999999999985 3577999986444
No 116
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=44.38 E-value=4.6e+02 Score=30.94 Aligned_cols=102 Identities=14% Similarity=0.207 Sum_probs=55.2
Q ss_pred ChhhHHHHHHHhc-CCHHHHHHHhhhhhHHhccCCCcchHHHHHhhhhhcc-cchhHHHHHhhccccccccC-----cch
Q 008865 30 NVKDYEGIIEAAK-TSLKAKQLAAQLIPRFFKFFPDLSSRAVDAHLDLIEE-EELGVRVQAIRGLPLFCKDT-----PEY 102 (550)
Q Consensus 30 ~~~~y~~Il~~~K-gs~k~K~LAaQfI~kffk~FP~L~e~Ai~a~lDLcED-ed~~IR~qaik~Lp~lck~~-----~e~ 102 (550)
+.+....++.+.- ++...|+-|-+++-.|-+ =| +|......+... .++.||-.|.--|-...+.. ++-
T Consensus 26 Dv~~Le~lv~~ly~p~~~~r~qA~~~L~q~q~-sp----~aw~~~~~iL~~s~~~~vR~fAa~~L~~~I~~~W~~L~~e~ 100 (1073)
T 3gjx_A 26 DINLLDNVVNCLYHGEGAQQRMAQEVLTHLKE-HP----DAWTRVDTILEFSQNMNTKYYGLQILENVIKTRWKILPRNQ 100 (1073)
T ss_dssp SHHHHHHHHHTTTCSSHHHHHHHHHHHHTSSC-CS----CHHHHHTCC---CCSHHHHHHHHHHHHHHHHHTGGGSCHHH
T ss_pred CHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHc-Cc----hHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhhhCCHHH
Confidence 5667777777654 667777777777766544 34 455555555543 46778877665554444321 111
Q ss_pred hhhHHHHHHHHHhh---------chhHHHHHHHHHHHHHHhhc
Q 008865 103 LSKIVDILVQLLAA---------EEIVERDAVHKALMSLLRQD 136 (550)
Q Consensus 103 ~~riaDVL~QLLqs---------dd~~E~~~v~~aL~sllk~D 136 (550)
...+=+-|++++.. .++.-++.+-.+|..+++.+
T Consensus 101 ~~~LR~~Ll~~l~~~~~~~~~~e~~~~vinKLa~~La~I~k~~ 143 (1073)
T 3gjx_A 101 CEGIKKYVVGLIIKTSSDPTCVEKEKVYIGKLNMILVQILKQE 143 (1073)
T ss_dssp HHHHHHHHHHHHHHHHTCGGGGTSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCccccccchHHHHHHHHHHHHHHHHh
Confidence 22344455555543 12344555556666666664
No 117
>1t06_A Hypothetical protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, unknown function; 1.90A {Bacillus cereus} SCOP: a.118.1.17
Probab=43.66 E-value=83 Score=30.19 Aligned_cols=82 Identities=10% Similarity=-0.030 Sum_probs=62.3
Q ss_pred hhhHHhccCCCcchHHHHHhhhhhcccchhHHHHHhh----cccccc-cc-CcchhhhHHHHHHHHHhhchhHHHHHHHH
Q 008865 54 LIPRFFKFFPDLSSRAVDAHLDLIEEEELGVRVQAIR----GLPLFC-KD-TPEYLSKIVDILVQLLAAEEIVERDAVHK 127 (550)
Q Consensus 54 fI~kffk~FP~L~e~Ai~a~lDLcEDed~~IR~qaik----~Lp~lc-k~-~~e~~~riaDVL~QLLqsdd~~E~~~v~~ 127 (550)
+++..|++.|. +.+-++.+..|++.=+|..||- =|-.+- |. +..++..+-++....+.+++.-..-++-.
T Consensus 98 ~~~~l~~~~~~----~~~~~~~W~~s~~~w~rR~ai~~q~~ll~~~~~k~~~~~~~~~~l~~i~~~l~~~~~~v~kAi~W 173 (235)
T 1t06_A 98 VVAVTLSESNI----AQDVADKWIASGDELKMSAGWSCYCWLLGNRKDNAFSESKISDMLEMVKDTIHHSPERTKSAMNN 173 (235)
T ss_dssp THHHHHTTSSS----HHHHHHHHHHSCCHHHHHHHHHHHHHHHHHSCGGGSCHHHHHHHHHHHHHHGGGSCHHHHHHHHH
T ss_pred HHHHHHhcCch----HHHHHHHHHcCcHHHHHHHHHHHHHHHHhhccccCcChhhHHHHHHHHHHHccCChHHHHHHHHH
Confidence 34455666666 5667888999999999999997 333322 21 34678888888888999999999999999
Q ss_pred HHHHHHhhchHH
Q 008865 128 ALMSLLRQDVKA 139 (550)
Q Consensus 128 aL~sllk~D~k~ 139 (550)
+|.++.+.||.-
T Consensus 174 ~Lr~~gk~~~~~ 185 (235)
T 1t06_A 174 FLNTVAISYVPL 185 (235)
T ss_dssp HHHHHHHHCGGG
T ss_pred HHHHHHhhCHHH
Confidence 999988887763
No 118
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=43.64 E-value=2.8e+02 Score=28.40 Aligned_cols=173 Identities=20% Similarity=0.269 Sum_probs=90.4
Q ss_pred cchhHHHHHhhccccccccCcch-----------hhhHHHHHHHHHhhchhHHHHHHHHHHHHHHhh---ch-------H
Q 008865 80 EELGVRVQAIRGLPLFCKDTPEY-----------LSKIVDILVQLLAAEEIVERDAVHKALMSLLRQ---DV-------K 138 (550)
Q Consensus 80 ed~~IR~qaik~Lp~lck~~~e~-----------~~riaDVL~QLLqsdd~~E~~~v~~aL~sllk~---D~-------k 138 (550)
.++.||-+|.+=|-.=-++||.- +..+.+-|.++..... ....++.+..++++.- +| -
T Consensus 82 ~~~~~rE~aarII~ssLRNNP~Al~~V~~~~p~fv~~lf~~L~~~~~~~~-~~~~~l~KR~LsII~~L~~~~~~F~~~~m 160 (315)
T 3qml_C 82 LPLTLRELSTRVITSCLRNNPPVVEFINESFPNFKSKIMAALSNLNDSNH-RSSNILIKRYLSILNELPVTSEDLPIYST 160 (315)
T ss_dssp SCHHHHHHHHHHHHHHHTTCHHHHHHHHHHCTTHHHHHHHHHHHHHCC---CCCHHHHHHHHHHHHHSCCCSTTC--CCH
T ss_pred CChhHHHHHHHHHHHHHccCHHHHHHHHHhChhHHHHHHHHHHHHhhccc-chhHHHHHHHHHHHHHHhcChHhhhhccH
Confidence 44557777766665555555543 3333333333321100 1123555555555442 22 2
Q ss_pred HHHHHHHHhhccCCCCCChHHHHHHHHHHHhhhcc-cchhh------hcC-----ChHHHHHHHHHHHHhhhcccchHH-
Q 008865 139 ASLTALFKHIGSVDEPSTDEFIREKVLSFIRDKVF-PLKAE------LLK-----PQEEMERHITDLIKKSLEDVTGAE- 205 (550)
Q Consensus 139 ~tLt~lf~qI~~~~e~~~eE~vREr~lkFl~~kl~-~l~~e------~l~-----~~eE~Ee~i~~~ikKvL~dVt~~E- 205 (550)
.+|..+|. +. ..+..++.|++..|..-.. .++.. +-+ |..++++ ...++-+.+++-..+|
T Consensus 161 ~~L~~ly~-~~-----~~d~~~k~Kvl~li~d~f~~~~~~~~~~~~~~~kR~~e~~~~~~q~-w~~~~q~~iq~k~~dE~ 233 (315)
T 3qml_C 161 VVLQNVYE-RN-----NKDKQLQIKVLELISKILKADMYENDDTNLILFKRNAENWSSNLQE-WANEFQEMVQNKSIDEL 233 (315)
T ss_dssp HHHHHHHH-HT-----TTCHHHHHHHHHHHHHHHHHHTTC-------------------CHH-HHHHHHHHHTCTTSCHH
T ss_pred HHHHHHHc-cC-----CCCHHHHHHHHHHHHHHcccccccccccccchhhhcccccCchHHH-HHHHHHHHHhccccCHH
Confidence 57777775 22 3367889999988776332 12111 111 1112222 3455556677544444
Q ss_pred -HHHHHHHHhhccc-c-CCCCchhHHHHHHHHHHHhhc-----ccccCCCCCh--hhHHHHHHHHHHh
Q 008865 206 -FRMFMDFLKSLSL-F-GEKAPTERMKELIGIIEGQAD-----LDAQFNVSDA--DHIDRLISCLYMA 263 (550)
Q Consensus 206 -F~l~m~lL~sL~~-~-~~~~~~gr~qeLv~~i~eqa~-----Ld~~f~~sD~--d~idRli~cl~~A 263 (550)
|..|+.-|..++. + .+..|. ...+++++.+++ ++.....-|. +.+|+.+--.+|.
T Consensus 234 ~~r~fF~~L~~ik~~~~~~lK~~---~~FLnWLa~E~e~Rk~~~~~~~~~rd~eq~~FD~~li~sRH~ 298 (315)
T 3qml_C 234 HTRTFFDTLYNLKKIFKSDITIN---KGFLNWLAQQCKARQSNLDNGLQERDTEQDSFDKKLIDSRHL 298 (315)
T ss_dssp HHHHHHHHHHHHHHHHGGGSCCC---HHHHHHHHHHHHHHHHHHTSCCSCCCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhcccccCCC---HHHHHHHHHHHHHHHhhhccccccCChHHHHHHHHHHHHHHH
Confidence 5678877777766 4 344555 679999998876 4444444333 5777776555553
No 119
>3k62_A FEM-3 mRNA-binding factor 2; FBF, FEM-3 binding factor, PUF, RNA-binding specificity, base flipping, base stacking; 1.90A {Caenorhabditis elegans} PDB: 3k5y_A 3k5z_A 3k61_A 3k5q_A 3k64_A 3qg9_A 3v6y_A 3v74_A 3qgc_A 3qgb_A
Probab=37.95 E-value=1.1e+02 Score=31.98 Aligned_cols=208 Identities=8% Similarity=0.113 Sum_probs=104.6
Q ss_pred ccccccccCcchhhhHHHHHHHHHhhc-hhHHHHHHHHHHHH------HHhhchHH--HHHHHHHhhccCCCCCChH---
Q 008865 91 GLPLFCKDTPEYLSKIVDILVQLLAAE-EIVERDAVHKALMS------LLRQDVKA--SLTALFKHIGSVDEPSTDE--- 158 (550)
Q Consensus 91 ~Lp~lck~~~e~~~riaDVL~QLLqsd-d~~E~~~v~~aL~s------llk~D~k~--tLt~lf~qI~~~~e~~~eE--- 158 (550)
.+..||+|. +-+| +|=++|... ++.|++.+-+.+.. -|-.|+-| .+..||..-.+ ...+
T Consensus 30 ~i~~la~Dq--~GsR---~lQ~~l~~~~~~e~~~~If~el~~~~~~~~~L~~d~fGNyvvQKlle~~~~----~~~~~~~ 100 (412)
T 3k62_A 30 DLMKFAVDK--TGCQ---FLEKAVKGSLTSYQKFQLFEQVIGRKDDFLKLSTNIFGNYLVQSVIGISLA----TNDDGYT 100 (412)
T ss_dssp CHHHHHTSH--HHHH---HHHHHTTSCCCHHHHHHHHHHHSSSHHHHHHHHTSTTHHHHHHHHHHHHHH----CCSTTHH
T ss_pred CcHHHhcCC--hhHH---HHHHHhccCCCHHHHHHHHHHHHhhhhHHHHHHhCcHHHHHHHHHHHhCCc----ccccccH
Confidence 456777773 3333 566677665 77888887766632 13335543 45666666431 0000
Q ss_pred HHHHHHHHHHhhhcccchhhhcCChHHHHHHHHHHHHhhhcccchHHHHHHHHHH----hhccccCCCCchhHHHHHHHH
Q 008865 159 FIREKVLSFIRDKVFPLKAELLKPQEEMERHITDLIKKSLEDVTGAEFRMFMDFL----KSLSLFGEKAPTERMKELIGI 234 (550)
Q Consensus 159 ~vREr~lkFl~~kl~~l~~e~l~~~eE~Ee~i~~~ikKvL~dVt~~EF~l~m~lL----~sL~~~~~~~~~gr~qeLv~~ 234 (550)
..|..++..+..++..+..+.- =.-.+.|+++-++.++...+++-| .-+.++.+.. | .-.|+-
T Consensus 101 ~q~~~i~~~l~g~v~~L~~~~~---------GsrvvQk~le~~~~~~~~~iv~eL~~~~~i~~L~~D~~--G--NhVIQK 167 (412)
T 3k62_A 101 KRQEKLKNFISSQMTDMCLDKF---------ACRVIQSSLQNMDLSLACKLVQALPRDARLIAICVDQN--A--NHVIQK 167 (412)
T ss_dssp HHHHHHHHHHHHTHHHHHHSTT---------HHHHHHHHHHHSCHHHHHHHHHTSCCSHHHHHHHHCTT--T--HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcChh---------hhHHHHHHHHhCCHHHHHHHHHHHhccccHHHHHhCcc--c--cHHHHH
Confidence 4577788888877766643322 113344555556666665554433 0112222222 1 112222
Q ss_pred HHHhhcccccCCCCChhhHHHHHHHHH---HhhhhhccCCCchhHHHHHHhhhcc-----cCCCCChhhhhhHHH-HHHH
Q 008865 235 IEGQADLDAQFNVSDADHIDRLISCLY---MALPFFLRGASGSKFLNYLNKHIIP-----VFDKLPEERKLDLLK-ALAE 305 (550)
Q Consensus 235 i~eqa~Ld~~f~~sD~d~idRli~cl~---~Alp~fs~~v~st~f~~y~~~~IlP-----~l~~L~~~~kl~lLK-~lAE 305 (550)
+.+. ..++..+.++..+. +... ++.+..++.-++-+.+..-+ .+...+.+.+..+++ ++.+
T Consensus 168 ~Le~---------~~~~~~~~I~~~~~~~~~~~~-la~h~~GcrVvQk~le~~~~~~~~~~~~~~~~~qr~~il~~L~~~ 237 (412)
T 3k62_A 168 VVAV---------IPLKNWEFIVDFVATPEHLRQ-ICSDKYGCRVVQTIIEKLTADSMNVDLTSAAQNLRERALQRLMTS 237 (412)
T ss_dssp HHHH---------SCHHHHHHHHHHHHSHHHHHH-HHTSHHHHHHHHHHHHHTSCSGGGTTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHh---------CCHHHHHHHHHHHhcchhHHH-HhcCcchHHHHHHHHHhcCcccccchhhhhhHHHHHHHHHHHHHH
Confidence 2222 12344455554332 2222 22333344444444433322 111112355666665 4567
Q ss_pred hCCCCCchhhhhhhHHHHHHHHhhC
Q 008865 306 ISPYTTPQDSRQILPSVAVLLKKYM 330 (550)
Q Consensus 306 ~s~~~~~~~a~~~l~~i~~~L~~~m 330 (550)
+.++|....-.+.-+.|.+.+++.-
T Consensus 238 I~~~~~~L~~dq~GNyViQ~iL~~g 262 (412)
T 3k62_A 238 VTNRCQELATNEYANYIIQHIVSND 262 (412)
T ss_dssp HHHTHHHHHHSTTTHHHHHHHHHCG
T ss_pred HHHHHHHHhhCccccHHHHHHHhcC
Confidence 7777776666777788888888773
No 120
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=36.12 E-value=11 Score=36.92 Aligned_cols=85 Identities=18% Similarity=0.184 Sum_probs=61.6
Q ss_pred HHhc-CCHHHHHHHhhhhhHHhccCCCcchHHHHHhhhhhcccchhHHHHHhhccccccccCcchhhhHHHHHHHHHhhc
Q 008865 39 EAAK-TSLKAKQLAAQLIPRFFKFFPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQLLAAE 117 (550)
Q Consensus 39 ~~~K-gs~k~K~LAaQfI~kffk~FP~L~e~Ai~a~lDLcEDed~~IR~qaik~Lp~lck~~~e~~~riaDVL~QLLqsd 117 (550)
...+ .++.+..-++..++. +.+..|.+|+|..||..|+..||. +.|.+|+..+
T Consensus 153 ~l~~D~d~~VR~~aa~~l~~-------------~ll~~ll~D~d~~VR~aaa~~l~~-------------~~L~~Ll~D~ 206 (244)
T 1lrv_A 153 RFMRDEDRQVRKLVAKRLPE-------------ESLGLMTQDPEPEVRRIVASRLRG-------------DDLLELLHDP 206 (244)
T ss_dssp GTTTCSCHHHHHHHHHHSCG-------------GGGGGSTTCSSHHHHHHHHHHCCG-------------GGGGGGGGCS
T ss_pred HHHcCCCHHHHHHHHHcCCH-------------HHHHHHHcCCCHHHHHHHHHhCCH-------------HHHHHHHcCC
Confidence 3444 677788777776431 345578899999999999998742 5788899999
Q ss_pred hhHHHHHHHHHHHHHHhhchHHHHHHHHHhhccCCCCCChHHHHHHHH
Q 008865 118 EIVERDAVHKALMSLLRQDVKASLTALFKHIGSVDEPSTDEFIREKVL 165 (550)
Q Consensus 118 d~~E~~~v~~aL~sllk~D~k~tLt~lf~qI~~~~e~~~eE~vREr~l 165 (550)
+...+..+-.+|- .. .+..+. ..+..||+.+.
T Consensus 207 d~~VR~~aa~~l~-------~~----~L~~L~-----D~~~~VR~aa~ 238 (244)
T 1lrv_A 207 DWTVRLAAVEHAS-------LE----ALRELD-----EPDPEVRLAIA 238 (244)
T ss_dssp SHHHHHHHHHHSC-------HH----HHHHCC-----CCCHHHHHHHH
T ss_pred CHHHHHHHHHcCC-------HH----HHHHcc-----CCCHHHHHHHH
Confidence 9999999988877 12 233342 56678888765
No 121
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=35.86 E-value=2.2e+02 Score=33.66 Aligned_cols=54 Identities=13% Similarity=0.217 Sum_probs=33.6
Q ss_pred CCcchHHHHHhhhhh---cccchhHHHHHhh---ccccccccCcchhhhHHHHHHHHHhh
Q 008865 63 PDLSSRAVDAHLDLI---EEEELGVRVQAIR---GLPLFCKDTPEYLSKIVDILVQLLAA 116 (550)
Q Consensus 63 P~L~e~Ai~a~lDLc---EDed~~IR~qaik---~Lp~lck~~~e~~~riaDVL~QLLqs 116 (550)
|++....+..++.+| +.+|+.||..+|. .+..+...+|+|++.+-.-|...++.
T Consensus 524 ~~l~~~~~~~Ll~~ll~~~~~~p~l~~~~i~~l~~l~~~~~~~p~~L~~vL~~ll~~l~~ 583 (1204)
T 3a6p_A 524 EEIPVNDGIELLQMVLNFDTKDPLILSCVLTNVSALFPFVTYRPEFLPQVFSKLFSSVTF 583 (1204)
T ss_dssp TCCCHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHGGGGGTCGGGHHHHHHHHHHHHHC
T ss_pred ccccHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhhcc
Confidence 455444455566655 4567778777776 34455556777887777766655543
No 122
>2w9y_A CE-FAR-7, fatty acid/retinol binding protein protein 7, isoform A, confirmed by transcript...; lipid transport; HET: CSX; 1.80A {Caenorhabditis elegans}
Probab=35.66 E-value=7.8 Score=35.46 Aligned_cols=112 Identities=13% Similarity=0.117 Sum_probs=67.5
Q ss_pred HHHHHHHHHHHhhhcccchHHHHHHHHHHhhccccCCCCchhHHHHHHHHHHHh------------hcccccCCCCChhh
Q 008865 185 EMERHITDLIKKSLEDVTGAEFRMFMDFLKSLSLFGEKAPTERMKELIGIIEGQ------------ADLDAQFNVSDADH 252 (550)
Q Consensus 185 E~Ee~i~~~ikKvL~dVt~~EF~l~m~lL~sL~~~~~~~~~gr~qeLv~~i~eq------------a~Ld~~f~~sD~d~ 252 (550)
|..++|=.++..-+.+.|.+|=..+.++.+.-..|++. .++++.+-+. ..|..-++...|++
T Consensus 11 e~ke~iP~ev~~f~~~Lt~eeK~~Lkev~kn~~~f~~e------~e~i~alK~KSp~L~~K~~~l~~~lk~Ki~~L~Pea 84 (140)
T 2w9y_A 11 CVKNFFPTEQLEFSSSITADEKPVLHEVFQKHSCFSQC------GEMIDEVSKKHPELGKRLATVLEGNKKRLDGLSPAA 84 (140)
T ss_dssp HHHTTCCHHHHHHHHHCCTTTHHHHHHHHTTCCC----------TTHHHHHHHHCHHHHHHHHHHHHHHHHTTTTCCHHH
T ss_pred HHHHHCcHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCH------HHHHHHHHHhCHHHHHHHHHHHHHHHHHHHcCCHHH
Confidence 44445556666777889999999999999988777532 2333333221 22445677778877
Q ss_pred HHHHHHHHHHhhhhhcc---CCCchhHHHHHHhhhcccCCCCChhhhhhHHHHHHH
Q 008865 253 IDRLISCLYMALPFFLR---GASGSKFLNYLNKHIIPVFDKLPEERKLDLLKALAE 305 (550)
Q Consensus 253 idRli~cl~~Alp~fs~---~v~st~f~~y~~~~IlP~l~~L~~~~kl~lLK~lAE 305 (550)
..-+-.++.....++++ |...+.- ..+.++..+..|+++.|-+|.+.|-.
T Consensus 85 k~Fv~kli~~~r~l~~~~~~G~k~~~~---~lK~~~~~ykaLS~~aK~dL~k~FP~ 137 (140)
T 2w9y_A 85 VEYAKKLIHMVTTTLCSLTVGKPIDDA---DAKRLHQEFQSLSSEDQAALRKNNPD 137 (140)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCCCTH---HHHHHHHHHHTSCHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCHH---HHHHHHHHHHcCCHHHHHHHHHhCcC
Confidence 76666666666666644 2222111 12445577888888888888877643
No 123
>2vso_E Eukaryotic initiation factor 4F subunit P150; acetylation, ATP-binding, phosphoprotein, protein biosynthesis, translation regulation; HET: AMP; 2.6A {Saccharomyces cerevisiae} PDB: 2vsx_E*
Probab=35.56 E-value=1.2e+02 Score=29.74 Aligned_cols=72 Identities=15% Similarity=0.112 Sum_probs=45.6
Q ss_pred HHHHHHHHHhhhcccchHHHHHHHHHHhhccc----cCCCCchhHHHHHHHHHHHhhcccccCCCCChhhHHHHHHHHHH
Q 008865 187 ERHITDLIKKSLEDVTGAEFRMFMDFLKSLSL----FGEKAPTERMKELIGIIEGQADLDAQFNVSDADHIDRLISCLYM 262 (550)
Q Consensus 187 Ee~i~~~ikKvL~dVt~~EF~l~m~lL~sL~~----~~~~~~~gr~qeLv~~i~eqa~Ld~~f~~sD~d~idRli~cl~~ 262 (550)
.+.+...++-+|..+|.+-|..+..=+-.+.+ .. + ..+.+.++++|.++|-.+..| .....++..++..
T Consensus 33 ~e~l~r~vkgiLNKLT~~nf~~i~~ql~~~~~~~~~~~--~-~~~l~~vi~~If~kA~~ep~f----s~~YA~Lc~~l~~ 105 (284)
T 2vso_E 33 KDEVERKMKSLLNKLTLEMFDAISSEILAIANISVWET--N-GETLKAVIEQIFLKACDEPHW----SSMYAQLCGKVVK 105 (284)
T ss_dssp HHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHGGGGCS--B-CHHHHHHHHHHHHHHHHCGGG----HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhccccC--c-HHHHHHHHHHHHHHHHcCcch----HHHHHHHHHHHHH
Confidence 34566677777888888888765443333322 11 1 245677899999887655544 3455677777766
Q ss_pred hhh
Q 008865 263 ALP 265 (550)
Q Consensus 263 Alp 265 (550)
-+|
T Consensus 106 ~l~ 108 (284)
T 2vso_E 106 ELN 108 (284)
T ss_dssp HSC
T ss_pred hcC
Confidence 665
No 124
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=34.05 E-value=29 Score=34.60 Aligned_cols=29 Identities=10% Similarity=0.307 Sum_probs=21.2
Q ss_pred HHHHHHHhhchhHHHHHHHHHHHHHHhhc
Q 008865 108 DILVQLLAAEEIVERDAVHKALMSLLRQD 136 (550)
Q Consensus 108 DVL~QLLqsdd~~E~~~v~~aL~sllk~D 136 (550)
--++++|.+-|+..++++-+++++++++-
T Consensus 210 ~~ia~ll~D~d~~VR~aAl~~lve~y~~~ 238 (266)
T 2of3_A 210 KTVAPFVGDKDVNVRNAAINVLVACFKFE 238 (266)
T ss_dssp HHHGGGGGCSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHh
Confidence 33456777777788888888888888773
No 125
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=33.81 E-value=1.5e+02 Score=35.18 Aligned_cols=99 Identities=17% Similarity=0.228 Sum_probs=70.6
Q ss_pred HHHHHHHh---c-CCHHHHHHHhhhhh---HHhccCCCcchHHHHHhhhhhcc------------cchhHHHHHhhcccc
Q 008865 34 YEGIIEAA---K-TSLKAKQLAAQLIP---RFFKFFPDLSSRAVDAHLDLIEE------------EELGVRVQAIRGLPL 94 (550)
Q Consensus 34 y~~Il~~~---K-gs~k~K~LAaQfI~---kffk~FP~L~e~Ai~a~lDLcED------------ed~~IR~qaik~Lp~ 94 (550)
...+|... . .+++...-+-+.|. .||++.|++-...++.++..+.| ....||..|--.|-.
T Consensus 531 ~~~Ll~~ll~~~~~~p~l~~~~i~~l~~l~~~~~~~p~~L~~vL~~ll~~l~~~~~~~~~~~~~~~~k~vr~~a~~al~~ 610 (1204)
T 3a6p_A 531 GIELLQMVLNFDTKDPLILSCVLTNVSALFPFVTYRPEFLPQVFSKLFSSVTFETVEESKAPRTRAVRNVRRHACSSIIK 610 (1204)
T ss_dssp HHHHHHHHHHCCCSCHHHHHHHHHHHHHHGGGGGTCGGGHHHHHHHHHHHHHCCTTCSTTSCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhhccCCcccccccccHHHHHHHHHHHHHHHH
Confidence 44555542 3 46776666666554 56667799999999999987766 334799999999999
Q ss_pred ccccCcchhhhHHH----HHHHHHhhch---hHHHHHHHHHHHHH
Q 008865 95 FCKDTPEYLSKIVD----ILVQLLAAEE---IVERDAVHKALMSL 132 (550)
Q Consensus 95 lck~~~e~~~riaD----VL~QLLqsdd---~~E~~~v~~aL~sl 132 (550)
||++-++++.-..| .+.+++.+.. ..|......||..+
T Consensus 611 L~~~~~~~L~p~~~~i~~~~~~~l~~~~~l~~~e~~~L~eal~~i 655 (1204)
T 3a6p_A 611 MCRDYPQLVLPNFDMLYNHVKQLLSNELLLTQMEKCALMEALVLI 655 (1204)
T ss_dssp HHHHCHHHHGGGHHHHHHHHHHHHHSTTTSCHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHhCcccccHHHHHHHHHHHHHH
Confidence 99999887644444 3345665444 67888888888666
No 126
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=33.35 E-value=50 Score=37.19 Aligned_cols=90 Identities=13% Similarity=0.142 Sum_probs=69.3
Q ss_pred cCCHHHHHHHhhhhhHHhccCCCcchHHHHHhhhhhcccchhHHHHHhhccccccccCcchhhhHHHHHHHHHhhchhHH
Q 008865 42 KTSLKAKQLAAQLIPRFFKFFPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQLLAAEEIVE 121 (550)
Q Consensus 42 Kgs~k~K~LAaQfI~kffk~FP~L~e~Ai~a~lDLcEDed~~IR~qaik~Lp~lck~~~e~~~riaDVL~QLLqsdd~~E 121 (550)
.+..=+=+-++=+.-||++++=..=+..+++++..-.|.|-+||.-|--.|-.++ .|+.+..+.++|-.+|..-| +
T Consensus 273 ~~~~WEVRHGGLLGLKYL~DLL~~Ld~Vv~aVL~GL~D~DDDVRAVAAetLiPIA--~p~~l~~LL~iLWd~L~~LD--D 348 (800)
T 3oc3_A 273 DSGDWQVQFSGLIALGYLKEFVEDKDGLCRKLVSLLSSPDEDIKLLSAELLCHFP--ITDSLDLVLEKCWKNIESEE--L 348 (800)
T ss_dssp GCSCHHHHHHHHHHHHHTGGGCCCHHHHHHHHHHHTTCSSHHHHHHHHHHHTTSC--CSSTHHHHHHHHHHHHHTCC--S
T ss_pred CCCCeeehhhhHHHHHHHHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHhhhhc--chhhHHHHHHHHHHHhhhhc--c
Confidence 4444455667777888885543333667778888779999999999999999999 67889999999999988743 2
Q ss_pred HHHHHHHHHHHHhh
Q 008865 122 RDAVHKALMSLLRQ 135 (550)
Q Consensus 122 ~~~v~~aL~sllk~ 135 (550)
+.+...++|+||..
T Consensus 349 LSASTgSVMdLLAk 362 (800)
T 3oc3_A 349 ISVSKTSNLSLLTK 362 (800)
T ss_dssp CCTTHHHHHHHHHH
T ss_pred cchhhHHHHHHHHH
Confidence 78888888887754
No 127
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=32.81 E-value=34 Score=37.00 Aligned_cols=53 Identities=13% Similarity=0.211 Sum_probs=44.0
Q ss_pred CCHHHHHHHhhhhhHHhccCCCcchH-----HHHHhhhhhcccchhHHHHHhhccccc
Q 008865 43 TSLKAKQLAAQLIPRFFKFFPDLSSR-----AVDAHLDLIEEEELGVRVQAIRGLPLF 95 (550)
Q Consensus 43 gs~k~K~LAaQfI~kffk~FP~L~e~-----Ai~a~lDLcEDed~~IR~qaik~Lp~l 95 (550)
.++.+--.|+.=|..|.+++|.-..- +=..++.|..++|+.||.+|++.+-.+
T Consensus 417 ~d~~~laVAc~Digefvr~~P~gr~i~~~lg~K~~VM~Lm~h~d~~Vr~~AL~avQkl 474 (480)
T 1ho8_A 417 QEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQAI 474 (480)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHHH
T ss_pred CCcceEEeecccHHHHHHHCcchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 35778889999999999999986543 456779999999999999999876544
No 128
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=31.61 E-value=14 Score=34.90 Aligned_cols=14 Identities=29% Similarity=0.283 Sum_probs=8.4
Q ss_pred hHhhcCChHHHHHH
Q 008865 419 EMAAAKTDEAKEKI 432 (550)
Q Consensus 419 ~~~~~k~de~k~k~ 432 (550)
...+.+.|+++++-
T Consensus 104 L~~a~~~DeakI~a 117 (175)
T 3lay_A 104 LLTASSPDTAKINA 117 (175)
T ss_dssp HHTSSSCCHHHHHH
T ss_pred HHhCCCCCHHHHHH
Confidence 44456677776553
No 129
>4flb_A Regulation of nuclear PRE-mRNA domain-containing; structural genomics consortium, SGC, protein binding; 1.80A {Homo sapiens}
Probab=31.47 E-value=1.1e+02 Score=26.29 Aligned_cols=49 Identities=18% Similarity=0.345 Sum_probs=39.0
Q ss_pred hHHHHHhhhhhcccchhHHHHHhhccccccccCcchhhhHHHHHHHHHhhchhH
Q 008865 67 SRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQLLAAEEIV 120 (550)
Q Consensus 67 e~Ai~a~lDLcEDed~~IR~qaik~Lp~lck~~~e~~~riaDVL~QLLqsdd~~ 120 (550)
+.+++..|+=+.. -.+.|..+...|-++.+|-+.|++++.+-+....+.
T Consensus 7 e~~l~~~L~~L~~-----s~~sI~~~s~w~l~h~~~a~~Iv~~i~~~l~~~~~~ 55 (132)
T 4flb_A 7 ESSLDRKFQSVTN-----TMESIQGLSSWCIENKKHHSTIVYHWMKWLRRSAYP 55 (132)
T ss_dssp HHHHHHHHHHCCS-----SHHHHHHHHHHHHHTGGGHHHHHHHHHHHHHHSCHH
T ss_pred HHHHHHHHHHCcc-----cHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCChh
Confidence 5677777776643 257888999999999999999999999988876553
No 130
>3u5c_h Suppressor protein STM1; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_h
Probab=31.19 E-value=10 Score=38.23 Aligned_cols=31 Identities=16% Similarity=0.152 Sum_probs=0.0
Q ss_pred hhhhhcCCCCCCCCCC----CCcccCCCC--CCCCCC
Q 008865 518 VNRALEGISRGGRGGI----RGRGRGWGA--RGRGRG 548 (550)
Q Consensus 518 ~~~~~~g~~~~~~~g~----rgrgr~~g~--~gr~~~ 548 (550)
|.....+...|+|||. ||.+||.+| ||+++|
T Consensus 213 F~~~~~~r~~~~rgg~~~~~~~~~rgg~g~~~~~~~~ 249 (273)
T 3u5c_h 213 FVESNTRKNFGDRNNNSRNNFNNRRGGRGARKGNNTA 249 (273)
T ss_dssp -------------------------------------
T ss_pred EcCCCCcCCCCCCCCccccccCCCcCCcccccCCCCC
No 131
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=28.73 E-value=2.5e+02 Score=27.75 Aligned_cols=121 Identities=14% Similarity=0.069 Sum_probs=71.8
Q ss_pred CCHHHHHHHhhhhhHHhc----cCCCcch----HHHHHhhhhhcccchhHHHHHhhccccccccCcchhhhHHHHHHHHH
Q 008865 43 TSLKAKQLAAQLIPRFFK----FFPDLSS----RAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQLL 114 (550)
Q Consensus 43 gs~k~K~LAaQfI~kffk----~FP~L~e----~Ai~a~lDLcEDed~~IR~qaik~Lp~lck~~~e~~~riaDVL~QLL 114 (550)
.+.++=.-+-+++.-+|. .-+.+.+ .-+=++++=+-|.-..||-++..-|-.+|.-.| -+++.+.|+.-+
T Consensus 99 ~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~--~~~v~~~l~~g~ 176 (266)
T 2of3_A 99 TNPAALIKVLELCKVIVELIRDTETPMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVG--PLKMTPMLLDAL 176 (266)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHC--HHHHHHHHHHGG
T ss_pred CCHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCC--HHHHHHHHHHHH
Confidence 344444444455555443 2233332 234556777778887888777666666665322 356888888888
Q ss_pred hhchhHHHHHHHHHHHH---HHhhchHHHH---HHHHHhhccCCCCCChHHHHHHHHHHHhh
Q 008865 115 AAEEIVERDAVHKALMS---LLRQDVKASL---TALFKHIGSVDEPSTDEFIREKVLSFIRD 170 (550)
Q Consensus 115 qsdd~~E~~~v~~aL~s---llk~D~k~tL---t~lf~qI~~~~e~~~eE~vREr~lkFl~~ 170 (550)
.+-.+-.+..+=.-|.+ .+-+.|...| -.+..++. +-|..||+-++.-+.+
T Consensus 177 ksKN~R~R~e~l~~l~~li~~~G~~~~~~l~~~~~ia~ll~-----D~d~~VR~aAl~~lve 233 (266)
T 2of3_A 177 KSKNARQRSECLLVIEYYITNAGISPLKSLSVEKTVAPFVG-----DKDVNVRNAAINVLVA 233 (266)
T ss_dssp GCSCHHHHHHHHHHHHHHHHHHCSGGGGGGCHHHHHGGGGG-----CSSHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCCccccccchHHHHHHHc-----CCCHHHHHHHHHHHHH
Confidence 87666444444433333 3344566666 66777776 5566788888876554
No 132
>3gvo_A Pumilio 2, pumilio homolog 2; RNA-binding, PUF domain, RNA binding protein; HET: DTD; 1.60A {Mus musculus} SCOP: a.118.1.8 PDB: 3gvt_A 3q0q_A 3q0r_A 3q0s_A 1ib2_A 1m8w_A 1m8x_A 1m8y_A 1m8z_A 3q0l_A 3q0m_A 3q0n_A 3q0o_A 3q0p_A 2yjy_A 3bsx_A 3bsb_A 3h3d_X
Probab=28.59 E-value=1.3e+02 Score=30.05 Aligned_cols=71 Identities=23% Similarity=0.279 Sum_probs=40.0
Q ss_pred cccccccCcchhhhHHHHHHHHHhhchhHHHHHHHHHHHHHHh---hch--HHHHHHHHHhhccCCCCCChHHHHHHHHH
Q 008865 92 LPLFCKDTPEYLSKIVDILVQLLAAEEIVERDAVHKALMSLLR---QDV--KASLTALFKHIGSVDEPSTDEFIREKVLS 166 (550)
Q Consensus 92 Lp~lck~~~e~~~riaDVL~QLLqsdd~~E~~~v~~aL~sllk---~D~--k~tLt~lf~qI~~~~e~~~eE~vREr~lk 166 (550)
+..+|+| .+-+|+ |=++|....+.|++.+-+.+...+- .|+ .-++..+|... ++..|..+++
T Consensus 28 i~~la~d--q~gsR~---lQ~~l~~~~~~~~~~i~~ei~~~~~~L~~d~~gn~vvQklle~~--------~~~~~~~i~~ 94 (351)
T 3gvo_A 28 IVEFSQD--QHGSRF---IQQKLERATPAERQIVFNEILQAAYQLMTDVFGNYVIQKFFEFG--------SLDQKLALAT 94 (351)
T ss_dssp HHHHHTS--HHHHHH---HHHHHHHCCHHHHHHHHHHHGGGHHHHHTSTTHHHHHHHHHHHC--------CHHHHHHHHH
T ss_pred HHHHhcC--CcchHH---HHHHHhhCCHHHHHHHHHHHHHhHHHHHhChhhhHHHHHHHhhC--------CHHHHHHHHH
Confidence 6777887 455665 3445555667777777666544322 233 33455566542 2455666666
Q ss_pred HHhhhcccc
Q 008865 167 FIRDKVFPL 175 (550)
Q Consensus 167 Fl~~kl~~l 175 (550)
-+..++..+
T Consensus 95 ~i~g~~~~l 103 (351)
T 3gvo_A 95 RIRGHVLPL 103 (351)
T ss_dssp HHTTCHHHH
T ss_pred HHHhhHHHH
Confidence 666665554
No 133
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=28.35 E-value=24 Score=26.54 Aligned_cols=22 Identities=23% Similarity=0.131 Sum_probs=19.3
Q ss_pred hhhhhhc-cHHHHhhhhhcCCCC
Q 008865 441 TGLRTCN-NILAMSKPLHSKTPS 462 (550)
Q Consensus 441 ~aL~~~~-NI~~li~~l~~~pPs 462 (550)
.||+.|+ |+...+.-|+.++||
T Consensus 31 ~AL~~t~gnve~Ave~L~~~~~s 53 (53)
T 2knz_A 31 QALIATGGDINAAIERLLGSQLS 53 (53)
T ss_dssp HHHHHHTSCHHHHHHHHHHCCCC
T ss_pred HHHHHhCCCHHHHHHHHHHcCCC
Confidence 5889888 899999999998875
No 134
>3fh3_A Putative ECF-type sigma factor negative effector; putative anti-sigma W factor, MCSG, PSI, structural genomics; HET: MSE; 2.10A {Bacillus anthracis str} PDB: 3fgg_A
Probab=28.28 E-value=1.4e+02 Score=27.70 Aligned_cols=102 Identities=17% Similarity=0.271 Sum_probs=54.7
Q ss_pred HHHHHHhhhcccchHHHHHHHHHHhhccccCCCCchhHHHHHHHHHHHhhcccccCCC--CChhhHHHHHHHHHHhhhhh
Q 008865 190 ITDLIKKSLEDVTGAEFRMFMDFLKSLSLFGEKAPTERMKELIGIIEGQADLDAQFNV--SDADHIDRLISCLYMALPFF 267 (550)
Q Consensus 190 i~~~ikKvL~dVt~~EF~l~m~lL~sL~~~~~~~~~gr~qeLv~~i~eqa~Ld~~f~~--sD~d~idRli~cl~~Alp~f 267 (550)
+.+.+--+=...|.+||..|+++++-+-..+ + .+. +=|.+++. ..++-=.++-......-|||
T Consensus 25 ~~akL~~Ak~~LtkeEFeqfi~LlKe~~~i~----------k--~~~---D~NG~~~~ErLs~~eqekl~~i~~eL~Pyf 89 (158)
T 3fh3_A 25 FSAKLSEAKDEMGTKEYEVFTKELKKLTNAK----------L--AYG---DSNGNIDYDALSSEKREEMKKVSMGLQPYF 89 (158)
T ss_dssp HHHHHHGGGGTSCHHHHHHHHHHHHHHHHHH----------H--HHB---CTTSCBCGGGSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH----------H--hcc---CcCCCCChHHCCHHHHHHHHHHHHHhccHH
Confidence 3344433444689999999999998664432 1 111 11233332 22233345555666778887
Q ss_pred ---ccCCCc------hhHHHHHH---h--hhc--------ccCCCCChhhhhhHHHHHHHh
Q 008865 268 ---LRGASG------SKFLNYLN---K--HII--------PVFDKLPEERKLDLLKALAEI 306 (550)
Q Consensus 268 ---s~~v~s------t~f~~y~~---~--~Il--------P~l~~L~~~~kl~lLK~lAE~ 306 (550)
..+.+| -.|..|+- + .|. +..+.+|+..|-++.++.+.|
T Consensus 90 DKL~~~~ssk~~lt~~e~~~y~~~l~~~~~~~~~~~~~g~~~ve~~pe~~~e~~~~~~~~~ 150 (158)
T 3fh3_A 90 DKLNGHKSSKEVLTQEEFDRYMEALMTHEIVRVKTKSTGAIKVEEIPEAYKERFIKAEQFM 150 (158)
T ss_dssp HHHTTCCCHHHHSCHHHHHHHHHHHHHHHHHHHHHTCSSCCCGGGSCGGGHHHHHHHHHHH
T ss_pred HHHcCCccHhhhcCHHHHHHHHHHHHHHHHheeecCCCCCccHHhcCHHHHHHHHHHHHHH
Confidence 122221 23333332 1 222 356677888888888877655
No 135
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=26.68 E-value=5.9e+02 Score=27.91 Aligned_cols=154 Identities=12% Similarity=0.248 Sum_probs=0.0
Q ss_pred hhcccchhH------HHHHhhccccccccCcchhhhHHHHHHHHHhhchh-HHHHHHHHHHHHHHhh--chHHHHHHHHH
Q 008865 76 LIEEEELGV------RVQAIRGLPLFCKDTPEYLSKIVDILVQLLAAEEI-VERDAVHKALMSLLRQ--DVKASLTALFK 146 (550)
Q Consensus 76 LcEDed~~I------R~qaik~Lp~lck~~~e~~~riaDVL~QLLqsdd~-~E~~~v~~aL~sllk~--D~k~tLt~lf~ 146 (550)
+|-|+|-.| |+|.. |-|-+.++.++|.|+=-||=+-... .+...+.+.++..|+. ....-....++
T Consensus 35 fCaDeDwGvkCPSGCrLQgl-----LdkqErDltkrINELKnqLEdlsKnsKdseqy~k~~~E~Lr~rq~q~~dNdNtyn 109 (562)
T 3ghg_A 35 FCSDEDWNYKCPSGCRMKGL-----IDEVNQDFTNRINKLKNSLFEYQKNNKDSHSLTTNIMEILRGDFSSANNRDNTYN 109 (562)
T ss_dssp BCCSSSBTTEEECHHHHHHH-----HHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTSSHHHHHHHHHHHHH
T ss_pred cccccccCCCCCcccchhhh-----HHhhcCcHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHhhhccchhHH
Q ss_pred hhccCCCCCChHHHHHHHHHHHhhhcccchhhhcCChHHHHHHHHHHHHhhhcccchHHHHHHHHHHhhccccCCCCch-
Q 008865 147 HIGSVDEPSTDEFIREKVLSFIRDKVFPLKAELLKPQEEMERHITDLIKKSLEDVTGAEFRMFMDFLKSLSLFGEKAPT- 225 (550)
Q Consensus 147 qI~~~~e~~~eE~vREr~lkFl~~kl~~l~~e~l~~~eE~Ee~i~~~ikKvL~dVt~~EF~l~m~lL~sL~~~~~~~~~- 225 (550)
||. ++||.++. +|..+|.. +-..-..|-.-|...+.++-.-|-++-+.+=.|=-.......+
T Consensus 110 E~S--------~ELRRrIq-yLKekVdn--------QlsnIrvLQsnLedq~~kIQRLEvDIdiqirsCKgsCsr~~~~~ 172 (562)
T 3ghg_A 110 RVS--------EDLRSRIE-VLKRKVIE--------KVQHIQLLQKNVRAQLVDMKRLEVDIDIKIRSCRGSCSRALARE 172 (562)
T ss_dssp HTT--------HHHHHHHH-HHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTBSCCCCCC
T ss_pred HHH--------HHHHHHHH-HHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchheee
Q ss_pred -------hHHHHHHHHHHHhhcccccCCCCChhhHHHH
Q 008865 226 -------ERMKELIGIIEGQADLDAQFNVSDADHIDRL 256 (550)
Q Consensus 226 -------gr~qeLv~~i~eqa~Ld~~f~~sD~d~idRl 256 (550)
..+++|.+++.- ..+++.|..++--+
T Consensus 173 vd~~sY~~~QKQLeQv~a~-----dL~p~~~~q~Lp~l 205 (562)
T 3ghg_A 173 VDLKDYEDQQKQLEQVIAK-----DLLPSRDRQHLPLI 205 (562)
T ss_dssp CCHHHHHHHHHHHHHHHTT-----CCCCSCCCC-----
T ss_pred cchHHHHHHHHHHHHHhhc-----ccCCccccccchhc
No 136
>3d9j_A RNA-binding protein 16; SCAF8, RNA polymerase II CTD interacting domain, arm repeats phospho-CTD, phosphoprotein, transcription; 1.60A {Homo sapiens} PDB: 3d9k_A* 3d9l_A* 3d9m_A* 3d9n_A* 3d9p_A* 3d9i_A 3d9o_A* 2diw_A
Probab=25.12 E-value=2e+02 Score=25.55 Aligned_cols=51 Identities=4% Similarity=0.104 Sum_probs=36.0
Q ss_pred HHHHhhhhhcccchhHHHHHhhccccccccCcchhhhHHHHHHHHHhhchh
Q 008865 69 AVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQLLAAEEI 119 (550)
Q Consensus 69 Ai~a~lDLcEDed~~IR~qaik~Lp~lck~~~e~~~riaDVL~QLLqsdd~ 119 (550)
++++.|+=..|--+.+=.+-|..|-.+|.++..|-+.|++++.+-+..-.+
T Consensus 6 ~f~~~L~~L~~~k~~~S~~~I~~LT~~a~~~~~~~~~IV~~~~~~i~k~~~ 56 (145)
T 3d9j_A 6 TFNSELYSLNDYKPPISKAKMTQITKAAIKAIKFYKHVVQSVEKFIQKCKP 56 (145)
T ss_dssp HHHHHHHGGGGSCSSCCHHHHHHHHHHHHHTGGGHHHHHHHHHHHHHHSCG
T ss_pred HHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 444444333332234666788899999999999999999999887777554
No 137
>1sz9_A PCF11 protein; RNA polymerase II CTD interacting domain, arm repeats, transcription; 2.10A {Saccharomyces cerevisiae} SCOP: a.118.9.4 PDB: 1sza_A* 2bf0_X
Probab=24.39 E-value=1.7e+02 Score=26.15 Aligned_cols=82 Identities=16% Similarity=0.123 Sum_probs=49.2
Q ss_pred HHHHhhccccccccCcchhhhHHHHHHHHHhhchhHHHHHHHHHHHHHHhh-------chHHHHHHHHHhhccCCCCCCh
Q 008865 85 RVQAIRGLPLFCKDTPEYLSKIVDILVQLLAAEEIVERDAVHKALMSLLRQ-------DVKASLTALFKHIGSVDEPSTD 157 (550)
Q Consensus 85 R~qaik~Lp~lck~~~e~~~riaDVL~QLLqsdd~~E~~~v~~aL~sllk~-------D~k~tLt~lf~qI~~~~e~~~e 157 (550)
-++-|..|-.+|.+|-+|-+.|++++.+-+..-.|.-.-.+==-+.++++. .+...|-.+|.+.-. ..+
T Consensus 23 Sk~~I~~LT~~a~~~~~~a~~Iv~~i~~~i~k~~p~~KL~~LYL~DsIvkN~g~~y~~~F~~~l~~~f~~~~~----~~d 98 (144)
T 1sz9_A 23 SRPIITTLTKLAEENISCAQYFVDAIESRIEKCMPKQKLYAFYALDSICKNVGSPYTIYFSRNLFNLYKRTYL----LVD 98 (144)
T ss_dssp CHHHHHHHHHHHHHTGGGHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCTTHHHHHHTTHHHHHHHHHH----TSC
T ss_pred cHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHhhHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHH----hCC
Confidence 456677899999999999999999998777654443332222222333332 222233344444432 345
Q ss_pred HHHHHHHHHHHhh
Q 008865 158 EFIREKVLSFIRD 170 (550)
Q Consensus 158 E~vREr~lkFl~~ 170 (550)
+.+|.++.+.+..
T Consensus 99 ~~~r~k~~rL~~~ 111 (144)
T 1sz9_A 99 NTTRTKLINMFKL 111 (144)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 7788888876665
No 138
>4gqb_C Histone H4 peptide; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=23.52 E-value=29 Score=22.44 Aligned_cols=6 Identities=50% Similarity=0.811 Sum_probs=2.2
Q ss_pred ccCCCC
Q 008865 537 GRGWGA 542 (550)
Q Consensus 537 gr~~g~ 542 (550)
|-|.||
T Consensus 10 glgkgg 15 (26)
T 4gqb_C 10 GLGKGG 15 (26)
T ss_pred ccCccc
Confidence 333333
No 139
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=23.37 E-value=17 Score=37.44 Aligned_cols=11 Identities=18% Similarity=0.546 Sum_probs=5.7
Q ss_pred HHHHHHHHHhh
Q 008865 160 IREKVLSFIRD 170 (550)
Q Consensus 160 vREr~lkFl~~ 170 (550)
+|..++.||..
T Consensus 37 ~R~~~v~wI~e 47 (358)
T 2pk2_A 37 YRQQAANLLQD 47 (358)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 45555555544
No 140
>2ozb_B U4/U6 small nuclear ribonucleoprotein PRP31; RNA-protein complex, ribonucleoprotein particle (RNP), PRE-M splicing, U4/U6 DI-snRNA, U4/U6 DI-snRNP; 2.60A {Homo sapiens} SCOP: a.183.1.1 PDB: 3siu_B 3siv_B
Probab=23.29 E-value=3e+02 Score=27.22 Aligned_cols=39 Identities=21% Similarity=0.360 Sum_probs=26.1
Q ss_pred cChhhHHHHHHHhcC-C--HH-HHHHHhhhhhHHhccCCCcch
Q 008865 29 QNVKDYEGIIEAAKT-S--LK-AKQLAAQLIPRFFKFFPDLSS 67 (550)
Q Consensus 29 ~~~~~y~~Il~~~Kg-s--~k-~K~LAaQfI~kffk~FP~L~e 67 (550)
+..++|+.|+.+..= + .+ .-.++-..--.|-.|||+|..
T Consensus 12 e~~~eY~~Ivqa~~lld~idkein~~~~rlre~Y~~~FPEL~~ 54 (260)
T 2ozb_B 12 EAAPEYRVIVDANNLTVEIENELNIIHKFIRDKYSKRFPELES 54 (260)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCTTHHH
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCccHHH
Confidence 566789999998872 2 33 333444444556699999986
No 141
>3fx7_A Putative uncharacterized protein; double helix, unknown function; 1.65A {Helicobacter pylori} SCOP: a.25.5.1 PDB: 2gts_A
Probab=23.12 E-value=1.1e+02 Score=26.20 Aligned_cols=33 Identities=9% Similarity=0.292 Sum_probs=29.7
Q ss_pred ChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008865 383 DFSDCYKDFTERLTTVEDLTRATMKKLTQGLAD 415 (550)
Q Consensus 383 D~~~~~kdFr~RLqyl~~~~q~yikkl~~~l~~ 415 (550)
.|++-++++..+|+-|...++.||.-|++-|+-
T Consensus 49 kFee~fe~l~s~l~~f~e~a~e~vp~L~~~i~v 81 (94)
T 3fx7_A 49 KFSEVLDNLKSTFNEFDEAAQEQIAWLKERIRV 81 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHhHHHHHHHHH
Confidence 578889999999999999999999999988754
No 142
>3clj_A Protein NRD1; CTD-interacting domain, nucleus, phosphoprotein, RNA polymer binding protein, RNA binding protein; 2.10A {Saccharomyces cerevisiae}
Probab=22.42 E-value=2.5e+02 Score=25.83 Aligned_cols=107 Identities=13% Similarity=0.139 Sum_probs=62.0
Q ss_pred hHHHHHhhhhhcccchhHHHHHhhccccccccCcchhhhHHHHHHHHHhhchh--------HHHHHHHHHHHHHHhh---
Q 008865 67 SRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQLLAAEEI--------VERDAVHKALMSLLRQ--- 135 (550)
Q Consensus 67 e~Ai~a~lDLcEDed~~IR~qaik~Lp~lck~~~e~~~riaDVL~QLLqsdd~--------~E~~~v~~aL~sllk~--- 135 (550)
+..+.++.||+ +.|=..=|+.|-.+|.+|-++-+.|+..|....+.=-+ +-=.+|++++.+.=+.
T Consensus 7 ~~~L~sL~~lk----p~iS~skI~~LT~~A~~nv~~~~~iv~~l~~~ikk~p~~hKL~~LYVvDSIvR~~~~~~~k~g~~ 82 (157)
T 3clj_A 7 VATLESFKDLK----SGISGSRIKKLTTYALDHIDIESKIISLIIDYSRLCPDSHKLGSLYIIDSIGRAYLDETRSNSNS 82 (157)
T ss_dssp HHHHHGGGGCS----SSCCHHHHHHHHHHHHHTGGGHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHHHHTCCC-
T ss_pred HHHHHHHHHcC----CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhCCCcceeeeeeehHHHHHHHHHHHHhcCCc
Confidence 34556677777 45545557777888999988888888888777776433 2223444444332111
Q ss_pred --ch-----------HHHHHHHHHhhccCCCCCChHHHHHHHHHHHhh--hcccchhhhcC
Q 008865 136 --DV-----------KASLTALFKHIGSVDEPSTDEFIREKVLSFIRD--KVFPLKAELLK 181 (550)
Q Consensus 136 --D~-----------k~tLt~lf~qI~~~~e~~~eE~vREr~lkFl~~--kl~~l~~e~l~ 181 (550)
.| ...+..+|+.+.. ..++..|+++.+.|.. |-...|.+++.
T Consensus 83 ~~a~~gt~a~~v~~~~e~i~~l~~~~~~----~~~~~~k~Ki~klldiW~k~~~Fp~e~i~ 139 (157)
T 3clj_A 83 SSNKPGTCAHAINTLGEVIQELLSDAIA----KSNQDHKEKIRMLLDIWDRSGLFQKSYLN 139 (157)
T ss_dssp ---STTSHHHHHHHHHHHHHHHHHHHHH----HSCHHHHHHHHHHHHHHHHHTTTTTSCCT
T ss_pred cCCCCccHHHHHHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHccCCCCCHHHHH
Confidence 01 2344556665331 2356677777776655 44444555554
No 143
>1d9c_A Interferon-gamma; helical homodimer, immune system; 2.00A {Bos taurus} SCOP: a.26.1.3 PDB: 1d9g_A 1rfb_A
Probab=21.95 E-value=45 Score=29.75 Aligned_cols=55 Identities=24% Similarity=0.416 Sum_probs=42.9
Q ss_pred HHHHHHHHHhhhhhhccccccChhhHHHHHHHhcCCHHHHHHHhhhhhHHhccCCCc
Q 008865 9 KQIEKLYEFGERLNEAKDKSQNVKDYEGIIEAAKTSLKAKQLAAQLIPRFFKFFPDL 65 (550)
Q Consensus 9 ~~ie~LY~~~~~L~~akd~~~~~~~y~~Il~~~Kgs~k~K~LAaQfI~kffk~FP~L 65 (550)
++||.|-.+|+ ++.+|=+..-.-|..|+.--+.....|.+=||.++=|||-|-.+
T Consensus 6 ~~Ie~Lk~yfN--~s~~dv~dggplFl~ilknw~ee~dkkIi~SqIvs~Y~klF~~m 60 (121)
T 1d9c_A 6 REIENLKEYFN--ASSPDVAKGGPLFSEILKNWKDESDKKIIQSQIVSFYFKLFENL 60 (121)
T ss_dssp HHHHHHHHHHT--CSSTTSSTTCCSSHHHHHHTTTCTTTHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhc--cCcccccCCCCchhHhhhhhccccchhhHHHHHHHHHHHHHHHh
Confidence 67999988885 23334345556799999998888888999999999999976544
No 144
>2yu0_A Interferon-activable protein 205; PAAD_dapin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=21.49 E-value=1.5e+02 Score=25.13 Aligned_cols=24 Identities=25% Similarity=0.456 Sum_probs=20.1
Q ss_pred HHhhhcccchHHHHHHHHHHhhccc
Q 008865 194 IKKSLEDVTGAEFRMFMDFLKSLSL 218 (550)
Q Consensus 194 ikKvL~dVt~~EF~l~m~lL~sL~~ 218 (550)
+.+.|+++|..+|.+|..+|.. .+
T Consensus 10 LL~gLE~l~~~~Fk~fK~lL~~-dL 33 (94)
T 2yu0_A 10 LLRGLECINKHYFSLFKSLLAR-DL 33 (94)
T ss_dssp TTTTTTTSCHHHHHHHHHHHHT-TT
T ss_pred HHHHHhcCCHHHHHHHHHHhcc-cc
Confidence 3478999999999999888887 44
No 145
>3rk6_A Polyadenylate-binding protein-interacting protein; heat fold, PABP, EIF4A, EIF3, translation regulator; 2.00A {Homo sapiens}
Probab=20.58 E-value=2.7e+02 Score=26.74 Aligned_cols=157 Identities=17% Similarity=0.154 Sum_probs=81.6
Q ss_pred HHHHHHHHHHhhhcccc--hHHHHHHH-HHHhhccccCCCCchhHHHHHHHHHHHhhcccccCCCCChhhHHHHHHHHHH
Q 008865 186 MERHITDLIKKSLEDVT--GAEFRMFM-DFLKSLSLFGEKAPTERMKELIGIIEGQADLDAQFNVSDADHIDRLISCLYM 262 (550)
Q Consensus 186 ~Ee~i~~~ikKvL~dVt--~~EF~l~m-~lL~sL~~~~~~~~~gr~qeLv~~i~eqa~Ld~~f~~sD~d~idRli~cl~~ 262 (550)
-...|...++.+|..+| ++.|+.+. +|+..+...- .+ ....+.+|++|.++|=-+..| .....++...+.+
T Consensus 15 ~~~~l~r~v~~iLNkLT~~p~~f~~l~~~i~~~~~~~~-~~-~~~L~~vi~lIfekAi~ep~f----s~~YA~LC~~l~~ 88 (234)
T 3rk6_A 15 RGSTLSEYVQDFLNHLTEQPGSFETEIEQFAETLNGCV-TT-DDALQELVELIYQQATSIPNF----SYMGARLCNYLSH 88 (234)
T ss_dssp ---CHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHC-CS-HHHHHHHHHHHHHHHHSSTTC----HHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHccCChhhHHHHHHHHHHHHhcCC-CC-HHHHHHHHHHHHHHHHhCccc----HHHHHHHHHHHHH
Confidence 34445566666777788 88887654 2333222111 12 234688999999986544434 4455666666655
Q ss_pred hhhhhccCCCchhHHHHHHhhhcccCCCC------Chh---hhhhHHHHHHHhCCC----------CCchhhhhhhHHHH
Q 008865 263 ALPFFLRGASGSKFLNYLNKHIIPVFDKL------PEE---RKLDLLKALAEISPY----------TTPQDSRQILPSVA 323 (550)
Q Consensus 263 Alp~fs~~v~st~f~~y~~~~IlP~l~~L------~~~---~kl~lLK~lAE~s~~----------~~~~~a~~~l~~i~ 323 (550)
-+|.+. .++.|=+++.+..--.|..- ++. +-+-..+-++|+-.. .+....-.++..+.
T Consensus 89 ~l~~~~---~~~~Fr~lLL~rcQ~eFe~~~~~~~~d~~~k~r~lg~i~FIgELf~~l~~~~~~~~~l~e~I~~~ci~~Ll 165 (234)
T 3rk6_A 89 HLTISP---QSGNFRQLLLQRCRTEYEVKDQAAKGDEVTRKRFHAFVLFLGELYLNLEIKGTNGQVTRADILQVGLRELL 165 (234)
T ss_dssp HCCCCC---TTCCHHHHHHHHHHHHHTTHHHHTSSCHHHHHHHHHHHHHHHHHHHHCCEECTTSSEECCHHHHHHHHHHH
T ss_pred hcCCCC---chhHHHHHHHHHHHHHHHhhHHhhhccHHHHHHHHHHHHHHHHHHhhhcccccccchhHHHHHHHHHHHHH
Confidence 454432 23456666655443333332 111 223456777777321 11111222333333
Q ss_pred HHHHhhCCCCCCCCCccchHHHHHHHHHHHHhhhcCch
Q 008865 324 VLLKKYMPLRKTGGEEMNFTYVECLLYTFHHLAHKAPN 361 (550)
Q Consensus 324 ~~L~~~mP~~~~~~~~l~fS~vEcLL~afh~L~~k~p~ 361 (550)
..+.+. | .. ..|||+.-.++..|+.--.
T Consensus 166 ~~l~~~-p--~e-------e~vE~l~~lL~tvG~~Ld~ 193 (234)
T 3rk6_A 166 NALFSN-P--MD-------DNLICAVKLLKLTGSVLED 193 (234)
T ss_dssp HHHHHS-C--CH-------HHHHHHHHHHHHHHHHHHH
T ss_pred HhccCC-C--Ch-------HHHHHHHHHHHHHHHHHhh
Confidence 333322 2 21 4899999999998876443
No 146
>2rig_A Interferon-gamma; cytokine; 2.30A {Oryctolagus cuniculus} SCOP: a.26.1.3
Probab=20.41 E-value=57 Score=29.89 Aligned_cols=55 Identities=20% Similarity=0.355 Sum_probs=42.9
Q ss_pred HHHHHHHHHhhhhhhccccccChhhHHHHHHHhcCCHHHHHHHhhhhhHHhccCCCc
Q 008865 9 KQIEKLYEFGERLNEAKDKSQNVKDYEGIIEAAKTSLKAKQLAAQLIPRFFKFFPDL 65 (550)
Q Consensus 9 ~~ie~LY~~~~~L~~akd~~~~~~~y~~Il~~~Kgs~k~K~LAaQfI~kffk~FP~L 65 (550)
++||.|-.+|+ ++.+|=+..-.-|..|+.--+.....|.+=+|.++=|||-|-.|
T Consensus 6 k~Ie~LK~yfN--~s~~Dv~dggplFl~ilknw~ee~ekkIi~SqIvs~Y~klF~~m 60 (144)
T 2rig_A 6 RETEHLKAYLK--ANTSDVANGGPLFLNILRNWKEESDNKIIQSQIVSFYFKLFDNL 60 (144)
T ss_pred HHHHHHHHHhc--cCcccccCCCCchhHhhhhhhhccchhhHHHHHHHHHHHHHHHh
Confidence 67999988884 23334345566799999988888888999999999999987544
Done!