BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 008869
         (550 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3DDM|A Chain A, Crystal Structure Of Mandelate RacemaseMUCONATE
           Lactonizing Enzyme From Bordetella Bronchiseptica Rb50
 pdb|3DDM|B Chain B, Crystal Structure Of Mandelate RacemaseMUCONATE
           Lactonizing Enzyme From Bordetella Bronchiseptica Rb50
 pdb|3DDM|C Chain C, Crystal Structure Of Mandelate RacemaseMUCONATE
           Lactonizing Enzyme From Bordetella Bronchiseptica Rb50
 pdb|3DDM|D Chain D, Crystal Structure Of Mandelate RacemaseMUCONATE
           Lactonizing Enzyme From Bordetella Bronchiseptica Rb50
          Length = 392

 Score = 34.7 bits (78), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 4/71 (5%)

Query: 397 RGGDQEYLYVDGVGIKTGDYFQFYQPDHNAALAACRNASENIRNLKLNSSGKGFLGRRDV 456
           R G   + ++ G G + G Y     P++   + A R A+E  R  KL     GF   RDV
Sbjct: 131 RAGQPLWAWLGGSGDRIGVYASGINPENPEDVVA-RKAAEGYRAFKLKV---GFDDARDV 186

Query: 457 ANSIDRKEVLG 467
            N++  +E+LG
Sbjct: 187 RNALHVRELLG 197


>pdb|2YH2|A Chain A, Pyrobaculum Calidifontis Esterase Monoclinic Form
 pdb|2YH2|B Chain B, Pyrobaculum Calidifontis Esterase Monoclinic Form
 pdb|2YH2|C Chain C, Pyrobaculum Calidifontis Esterase Monoclinic Form
 pdb|2YH2|D Chain D, Pyrobaculum Calidifontis Esterase Monoclinic Form
 pdb|3ZWQ|A Chain A, Hyperthermophilic Esterase From The Archeon Pyrobaculum
           Calidifontis
 pdb|3ZWQ|B Chain B, Hyperthermophilic Esterase From The Archeon Pyrobaculum
           Calidifontis
          Length = 313

 Score = 29.3 bits (64), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 20/101 (19%), Positives = 43/101 (42%), Gaps = 6/101 (5%)

Query: 229 IIMFGKEDMDQKPIIEKLDYAMSMNTVFVGDERSRFA---YRSGDDLRNVCGNPAFISDA 285
           ++++   ++   P + +++Y+     +   D  + F    +    D  +   +P F   +
Sbjct: 182 VLIYPAVNLTGSPTVSRVEYSGPEYVILTADLMAWFGRQYFSKPQDALSPYASPIFADLS 241

Query: 286 ---VALVFASDKDKPHGTGEIQFHLAMSEGVSAIGPRHKAV 323
               ALV  ++ D     GE+  HL  + GV A+  R+  V
Sbjct: 242 NLPPALVITAEYDPLRDEGELYAHLLKTRGVRAVAVRYNGV 282


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.322    0.138    0.416 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,006,404
Number of Sequences: 62578
Number of extensions: 685675
Number of successful extensions: 1567
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1565
Number of HSP's gapped (non-prelim): 4
length of query: 550
length of database: 14,973,337
effective HSP length: 104
effective length of query: 446
effective length of database: 8,465,225
effective search space: 3775490350
effective search space used: 3775490350
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)