Query 008869
Match_columns 550
No_of_seqs 185 out of 293
Neff 5.3
Searched_HMMs 46136
Date Thu Mar 28 17:36:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008869.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008869hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG4398 Uncharacterized protei 100.0 7.9E-57 1.7E-61 448.3 27.3 370 62-545 6-388 (389)
2 COG3287 Uncharacterized conser 99.9 3.8E-27 8.2E-32 246.7 18.8 357 67-542 6-379 (379)
3 PF08495 FIST: FIST N domain; 99.8 9.2E-20 2E-24 173.8 14.1 196 90-351 1-198 (198)
4 PF10442 FIST_C: FIST C domain 99.7 2.1E-17 4.5E-22 150.3 9.8 96 388-511 37-135 (136)
5 PF00646 F-box: F-box domain; 96.8 0.00055 1.2E-08 51.3 1.7 36 23-58 6-41 (48)
6 PF12937 F-box-like: F-box-lik 96.7 0.00083 1.8E-08 50.6 1.5 34 23-56 4-37 (47)
7 smart00256 FBOX A Receptor for 96.1 0.003 6.6E-08 45.1 1.6 33 24-56 2-34 (41)
8 PF10442 FIST_C: FIST C domain 83.5 2.5 5.5E-05 38.2 5.6 67 62-132 61-135 (136)
9 PF08495 FIST: FIST N domain; 65.6 11 0.00025 35.6 5.2 58 464-542 1-58 (198)
10 PF12000 Glyco_trans_4_3: Gkyc 36.3 1.2E+02 0.0025 29.6 6.8 67 412-506 31-97 (171)
11 KOG0281 Beta-TrCP (transducin 29.6 32 0.00068 37.4 1.8 29 25-53 84-112 (499)
12 COG3287 Uncharacterized conser 27.2 1.1E+02 0.0024 33.6 5.4 44 463-511 29-72 (379)
13 COG0635 HemN Coproporphyrinoge 23.9 67 0.0015 35.4 3.2 70 42-116 41-118 (416)
14 COG4693 PchG Oxidoreductase (N 23.9 83 0.0018 33.4 3.6 52 47-117 283-338 (361)
15 PLN03215 ascorbic acid mannose 21.2 52 0.0011 35.9 1.6 33 23-55 7-40 (373)
16 PRK02842 light-independent pro 20.3 2.5E+02 0.0055 30.8 6.7 93 38-131 39-142 (427)
No 1
>COG4398 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=100.00 E-value=7.9e-57 Score=448.27 Aligned_cols=370 Identities=21% Similarity=0.278 Sum_probs=303.2
Q ss_pred ceeeeecCCCChHHHHHHHHHHHhcCC-CCCCeEEeeccc-Ccc--hHHHHHHHHHhcCCCCceEEeeeccccccchhhh
Q 008869 62 RIASACSFKASAPIALQEVLDKVLLEP-IRPHFAIANVGR-GFN--MRRTLDFLVKHLGLRTPIILSVVHGVMGRDALTD 137 (550)
Q Consensus 62 k~~~a~S~~p~~~~A~~ev~~q~l~~~-~~P~~aia~~~~-gfd--~~~~l~~i~~~~~~~~p~I~~~~~Giig~~~~~~ 137 (550)
..+-|.|+.|+.+.|+.|++.|+.++. ...+.+++|+++ .|- -..+|-.+.+++. -.-+|+|.+.|||+. ..
T Consensus 6 ~w~nAlstRpsle~A~~ea~~~a~~~l~g~~~l~~v~l~Sra~~~~aa~vlp~v~e~ls-~p~lIGC~~~giia~---~~ 81 (389)
T COG4398 6 GWSNALSTRPSLERAAVEAAAQARDELAGEAPLLAVLLGSRAHTDRAADVLPAVQEMLS-PPALIGCIAQGIVAG---RH 81 (389)
T ss_pred eeecccccchhHHHHHHHHHHHhhhcccCCCCEEEEEecccchhhhHHHHHHHHHHhcC-ccceeeecccceeee---ee
Confidence 345688999999999999999999975 445667778887 443 5566777777665 566788888888831 11
Q ss_pred HHHhhhccccccccccccccccCceEEEEEeeecCCCCeeeeeeccccCCCCCCCccccccCCCCCccccchhhcccccc
Q 008869 138 EFREVKFQDHEDIGVNRGICTCGQQSGIVLTVGYLPGLKVDAIPLLRRKEVPVDDTYVDVYLAPPVPMIDQFVMDIQNYT 217 (550)
Q Consensus 138 e~~e~~~~~~~~g~~~~g~~~~g~e~~l~l~vg~lP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~di~~~~ 217 (550)
|+ ..|.++++|+++ |...++|-+ +.+ -.++-+||+-.- +.
T Consensus 82 El--------------------E~E~A~s~~lA~--Gv~~~~F~l-----~~~--------~t~~~a~i~~~~-----~d 121 (389)
T COG4398 82 EL--------------------EDEPAVSVWLAS--GVAAETFHL-----DFV--------RTGSGALITGYR-----FD 121 (389)
T ss_pred ee--------------------cCCceEEEEecc--Ccccceeec-----ccc--------cCCCcceEEeee-----cC
Confidence 21 123599999999 655566641 111 123335554210 00
Q ss_pred cccCCCCCCeEEEEecC-CCCChhHHHHHHHhhcCCCceEEccccccccccCCCccccccCCCccccCeEEEEEecCCCC
Q 008869 218 TSVSGCASPVGIIMFGK-EDMDQKPIIEKLDYAMSMNTVFVGDERSRFAYRSGDDLRNVCGNPAFISDAVALVFASDKDK 296 (550)
Q Consensus 218 ~~~s~~~~p~~~lv~~D-~~~d~~~ll~~L~~al~~~~~I~GGla~~~~~~~gd~sr~~~~~~v~~~g~vgv~fa~d~~~ 296 (550)
. ++--.-|+++| .++..+.|+++|+.++|. ..++||+++. .+.+.+.+-|++.+++.+|.|||.+
T Consensus 122 ~-----t~~~~~ilL~dp~t~~~n~li~~l~~~~Pg-ttvvGG~~Sg--g~~~G~~~Lf~~~~~~~~G~vGv~L------ 187 (389)
T COG4398 122 R-----TARDLHLLLPDPYTFPSNLLIEHLNTDLPG-TTVVGGVVSG--GRRRGDTRLFRDHDVLTSGVVGVRL------ 187 (389)
T ss_pred C-----CCCCceEEccCCcccchHHHhhccCcCCCC-ceEEccEeec--CccCCceEEeecCCcccCceeEEee------
Confidence 0 11134488899 999999999999999976 8999999983 3555567778888889999999999
Q ss_pred CCCCCCEEEEEEeccCCeecCCCeEEEeeccccccCcceeccccccccccccCchHhHHhhHH-------hccCCCcceE
Q 008869 297 PHGTGEIQFHLAMSEGVSAIGPRHKAVSVRANHAEGSTWLTAKREGHHVILDGEQILRHIDQL-------ENRFPQVELY 369 (550)
Q Consensus 297 ~~~~g~i~~~~~vsqGc~PiGp~~~VT~v~~~~se~Nv~l~~~~~g~l~eLDG~pALd~L~e~-------~~~l~~~~l~ 369 (550)
.| +++.+.|+|||||||.++.|| ++++|+ +.||+|+|-|..|+++ +++|.+++|+
T Consensus 188 ---~G-i~l~~vVsQGCRPIGeP~iVt-----~a~~ni---------ItEl~gr~PL~~Lr~ii~~lsp~er~L~~~~L~ 249 (389)
T COG4398 188 ---PG-IRLVPVVSQGCRPIGEPYIVT-----GADGNI---------ITELGGRPPLQRLREIVEGLSPDERALVSHGLQ 249 (389)
T ss_pred ---cc-ceecchhccCcccCCCceEee-----ccCcee---------EeecCCCChHHHHHHHhhccChhhHHHHhcCce
Confidence 77 999999999999999999999 999999 9999999999977754 6889999999
Q ss_pred EEEeeccccccCCCCCceeeeeeeccccccCccc-ceeeccCCCCCCEEEEEccCHHHHHHHHHHHHHHHHHhhhccCCC
Q 008869 370 VGVTKRRKCSIGSEKSRLITTLAFHGIRGGDQEY-LYVDGVGIKTGDYFQFYQPDHNAALAACRNASENIRNLKLNSSGK 448 (550)
Q Consensus 370 iGl~~~~~~~~~~~~~~lvR~l~v~~ilG~D~~~-~i~~~~~I~~G~~vqf~~RD~~aA~~dl~~~~~~lr~l~~~~~~~ 448 (550)
||+++++......+++|++|.+ +|+||.. .|++++-|++|+++||+.||++++.+||+-..+.. .+++
T Consensus 250 iGi~~DE~~~~~~qGDFlIR~l-----LG~DPs~GaIaIgd~Vr~G~~lQF~~RD~~as~~dL~~l~er~---~~e~--- 318 (389)
T COG4398 250 IGIVVDEHLAAPGQGDFLIRGL-----LGADPSTGAIAIGEVVRVGATLQFQVRDAAAADKDLRLLVERA---AAEL--- 318 (389)
T ss_pred EEEEehhhhcCCCCCceEeeec-----cccCCCCCceeecceeccCcEEEEEEcccccchhHHHHHHHHH---HhhC---
Confidence 9999999988788999999999 9999999 79999999999999999999999999998766544 3333
Q ss_pred CcccccccccccCCCceeEEEEEeeCCCCcCCCCCCccchHhHHhhCCCCceeeeccccccCCCCCccCCCCCCCCCCcc
Q 008869 449 GFLGRRDVANSIDRKEVLGGFIFSCCGRGNSFFGGLNVDSFPFFENFPSAPLAGIFCGGEIGRGKLSMTGQESQEESPAE 528 (550)
Q Consensus 449 ~~~~~~~~~~~~~~~~p~gaL~fSC~GRG~~lfg~~~~E~~~vre~Lg~vPLaGFfa~GEIgp~~~~~~~g~~~~~~~~~ 528 (550)
..++.|||||||+|||..|||.+|+|+++|.+.||++|++||||+|||+| +++
T Consensus 319 -------------~~~avGaLmFsC~GRG~~m~G~p~~Ds~~~~~~~~gipl~GFF~~GEIGp-----V~g--------- 371 (389)
T COG4398 319 -------------PGRAVGALLFTCNGRGRRMFGVPDHDASTIEELLGGIPLAGFFAAGEIGP-----VAG--------- 371 (389)
T ss_pred -------------CCccceeEEEEecCccccccCCCCccHHHHHHHhCCCcccceeecCcccc-----ccc---------
Confidence 35689999999999999999999999999999999999999999999999 999
Q ss_pred cccccccceeeeeeccC
Q 008869 529 RRYLHVYSTAYLVISYS 545 (550)
Q Consensus 529 ~~~LH~yT~vl~lfse~ 545 (550)
+|+|||||.++++|.+.
T Consensus 372 r~~LHG~Ts~~ai~~~~ 388 (389)
T COG4398 372 RNALHGFTASMALFVDD 388 (389)
T ss_pred hhhhhccceeeEEEeec
Confidence 89999999999999765
No 2
>COG3287 Uncharacterized conserved protein [Function unknown]
Probab=99.95 E-value=3.8e-27 Score=246.66 Aligned_cols=357 Identities=15% Similarity=0.103 Sum_probs=233.9
Q ss_pred ecCCCChHHHHHHHHHHHhcCC-CCCCeEEe-ecccCcchHHHHHHHHHhcCCCCceEEeeeccccccchhhhHHHhhhc
Q 008869 67 CSFKASAPIALQEVLDKVLLEP-IRPHFAIA-NVGRGFNMRRTLDFLVKHLGLRTPIILSVVHGVMGRDALTDEFREVKF 144 (550)
Q Consensus 67 ~S~~p~~~~A~~ev~~q~l~~~-~~P~~aia-~~~~gfd~~~~l~~i~~~~~~~~p~I~~~~~Giig~~~~~~e~~e~~~ 144 (550)
+..-++..+|-+++.+..+.-. .++.|++. |.-..++|.++...|+.+++ ++++|||++.|.|..++..+
T Consensus 6 ~~~v~~~~d~~~v~~e~~~~~~~~~~~~~~ifF~~~~~~~~~l~~~l~~~~p-g~~liGCSTaGeitp~g~~~------- 77 (379)
T COG3287 6 KRGVSDGKDAESVIEEMARQLGSDRSDFVLIFFSPERDEHVQLASALKQAFP-GICLIGCSTAGEITPDGFKN------- 77 (379)
T ss_pred eccCcCcCCHHHHHHHHHHhhCcCCCCeEEEEeccccccHHHHHHHHHhhCC-CCeEeccccCceEccccccC-------
Confidence 3344444444444443333322 68899986 66666778899999999888 89999999999998443222
Q ss_pred cccccccccccccccCceEEEEEeeecCCCC---eeeeeeccccCCCCCCCccccccCCCCCccccchhhcccccccccC
Q 008869 145 QDHEDIGVNRGICTCGQQSGIVLTVGYLPGL---KVDAIPLLRRKEVPVDDTYVDVYLAPPVPMIDQFVMDIQNYTTSVS 221 (550)
Q Consensus 145 ~~~~~g~~~~g~~~~g~e~~l~l~vg~lP~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~di~~~~~~~s 221 (550)
|+|. +|+-..+.. +...+....|.. .| +-.+++++...|-.. ..+
T Consensus 78 -----~~V~-------------il~~~~~~~a~~s~~~~~~~s~~~-------~~----~i~~~~E~l~~~~~~---~~~ 125 (379)
T COG3287 78 -----GSVL-------------LLAFDSSEFAALSTALVDRESPVS-------RD----PIAEAIERLIRDKRD---RLS 125 (379)
T ss_pred -----CeEE-------------EEEechHHHHHhhhhhccccCccc-------ch----hHHHHHHHHHhcccc---ccc
Confidence 2222 222221111 101111111100 00 111223332222211 011
Q ss_pred CCCCCeEEEEecC-CCCChhHHHHHHHhhcCCCceEEccccccccccCCCcccc-----ccCCCccccC-eEEEEEecCC
Q 008869 222 GCASPVGIIMFGK-EDMDQKPIIEKLDYAMSMNTVFVGDERSRFAYRSGDDLRN-----VCGNPAFISD-AVALVFASDK 294 (550)
Q Consensus 222 ~~~~p~~~lv~~D-~~~d~~~ll~~L~~al~~~~~I~GGla~~~~~~~gd~sr~-----~~~~~v~~~g-~vgv~fa~d~ 294 (550)
-..+..+|+|.| ++.-...+++++.......+||+||.|+| +.+. ++..+ +.++ ++-++|
T Consensus 126 -~~r~~~~l~f~dgl~~~ee~l~~~~~~~~~~~iPi~GGsAaD-------~~~~e~t~v~~~g~-v~~~aavi~l~---- 192 (379)
T COG3287 126 -PTRPVLALTFIDGLSTSEEVLLDGAVLAALETIPIFGGSAAD-------DLEFERTYVFDEGE-VHEDAAVILLF---- 192 (379)
T ss_pred -ccCceEEEEEeccCCcchhhhhhhhhcccccceeeeccccCC-------CCccceEEEEEccc-cccCceEEEEe----
Confidence 133589999999 77777777774444444679999999994 3322 22556 6666 776777
Q ss_pred CCCCCCCCEEEEEEeccCCeecCCCeEEEeeccccccCcceeccccccccccccCchHhHHhhHHh---ccCCCcceE-E
Q 008869 295 DKPHGTGEIQFHLAMSEGVSAIGPRHKAVSVRANHAEGSTWLTAKREGHHVILDGEQILRHIDQLE---NRFPQVELY-V 370 (550)
Q Consensus 295 ~~~~~~g~i~~~~~vsqGc~PiGp~~~VT~v~~~~se~Nv~l~~~~~g~l~eLDG~pALd~L~e~~---~~l~~~~l~-i 370 (550)
++.+.|+++.++||.|++.+++|| ++++|+ ++||||+||.+.+.++- ++++....+ .
T Consensus 193 -----~t~l~f~~~~~~g~~Pt~~~~~VT-----ka~~~v---------V~EiDgePA~e~Y~e~vg~~e~l~~~~~~~~ 253 (379)
T COG3287 193 -----GTQLKFGHGFAHGFVPTDKTGVVT-----KADGDV---------VYEIDGEPAAEEYAEVVGAVEELDPEMFIPN 253 (379)
T ss_pred -----cceEEeecccccceEEccceEEEE-----eecCcE---------EEEeCCCcHHHHHHHHhCchhhcChhHhccc
Confidence 899999999999999999999999 888999 99999999999666542 233221111 2
Q ss_pred EEeeccccccCCCCCceeeeeeeccccccCcccceeecc-CCCCCCEEEEEccCHHHHHHHHHHHHHHHHHhhhccCCCC
Q 008869 371 GVTKRRKCSIGSEKSRLITTLAFHGIRGGDQEYLYVDGV-GIKTGDYFQFYQPDHNAALAACRNASENIRNLKLNSSGKG 449 (550)
Q Consensus 371 Gl~~~~~~~~~~~~~~lvR~l~v~~ilG~D~~~~i~~~~-~I~~G~~vqf~~RD~~aA~~dl~~~~~~lr~l~~~~~~~~ 449 (550)
+|...+. ...+++|.+ ...|++.++.+.- .|+.|..++++.-.. ....++++.. ...+++
T Consensus 254 pl~~~~~-----~~~y~vr~p-----~~~~e~~~~~f~~~~i~~~v~lr~~~~~~--~~~~~e~~~~---~a~~~~---- 314 (379)
T COG3287 254 PLGVRDL-----GPLYYVRAP-----QFVDEEGGLIFLSAAIPLGVVLRLGETGG--IERVTERALR---RAFEDL---- 314 (379)
T ss_pred ceEEEeC-----CCcEEEeCc-----ceeccccceEEeeccCCCccEEEeecCCc--ccHHHHHHHH---HHHhhc----
Confidence 3322221 344666665 9999998766665 999999999997655 3444444332 223333
Q ss_pred cccccccccccCCCceeEEEEEeeCCCCcCCCCCCccchHhHHhhCCCCceeeeccccccCCCCCccCCCCCCCCCCccc
Q 008869 450 FLGRRDVANSIDRKEVLGGFIFSCCGRGNSFFGGLNVDSFPFFENFPSAPLAGIFCGGEIGRGKLSMTGQESQEESPAER 529 (550)
Q Consensus 450 ~~~~~~~~~~~~~~~p~gaL~fSC~GRG~~lfg~~~~E~~~vre~Lg~vPLaGFfa~GEIgp~~~~~~~g~~~~~~~~~~ 529 (550)
++++.+.|.|+|.+| .+|-+.+.+.+.+++.+++=|.+|||||||+++ ..+ .
T Consensus 315 ------------~~~~~~vl~f~C~~R--~l~~~~~~~~~~~~e~l~~~~~vGf~tyGE~~~-----~~g---------~ 366 (379)
T COG3287 315 ------------PKAPALVLVFDCALR--RLFLDTDKERQPLKEQLPEDPCVGFNTYGEQGP-----ITG---------E 366 (379)
T ss_pred ------------cCCCceEEEEehhhh--hhhhhhhhhhhHHHHhcccCceecccccccccc-----ccc---------c
Confidence 234899999999999 678899999999999999559999999999999 335 5
Q ss_pred ccccccceeeeee
Q 008869 530 RYLHVYSTAYLVI 542 (550)
Q Consensus 530 ~~LH~yT~vl~lf 542 (550)
+..||+|.+-.+|
T Consensus 367 ~~h~Nqtf~~v~f 379 (379)
T COG3287 367 NVHHNQTFVGVAF 379 (379)
T ss_pred ceeeeeEEEEEeC
Confidence 8999999876554
No 3
>PF08495 FIST: FIST N domain; InterPro: IPR013702 The FIST N domain is a novel sensory domain, which is present in signal transduction proteins from Bacteria, Archaea and Eukarya. Chromosomal proximity of FIST-encoding genes to those coding for proteins involved in amino acid metabolism and transport suggest that FIST domains bind small ligands, such as amino acids [].
Probab=99.82 E-value=9.2e-20 Score=173.79 Aligned_cols=196 Identities=18% Similarity=0.246 Sum_probs=139.6
Q ss_pred CCCeEEeecccCcchHH-HHHHHHHhcCCCCceEEeeeccccccchhhhHHHhhhccccccccccccccccCceEEEEEe
Q 008869 90 RPHFAIANVGRGFNMRR-TLDFLVKHLGLRTPIILSVVHGVMGRDALTDEFREVKFQDHEDIGVNRGICTCGQQSGIVLT 168 (550)
Q Consensus 90 ~P~~aia~~~~gfd~~~-~l~~i~~~~~~~~p~I~~~~~Giig~~~~~~e~~e~~~~~~~~g~~~~g~~~~g~e~~l~l~ 168 (550)
||+++|.|.+..||.+. ++..|++.++ .+++|||++.|+|.... . +. .+.+++++
T Consensus 1 ~p~lvi~f~s~~~~~~~~i~~~l~~~~p-~~~iiG~st~g~i~~~~--~-----------------~~----~~~~v~~~ 56 (198)
T PF08495_consen 1 RPDLVILFCSPEYDEEAKILEALRERLP-DAPIIGCSTAGEICGGN--E-----------------GY----SDDGVSLL 56 (198)
T ss_pred CCEEEEEEecchhhhhHHHHHHHHHHCC-CCcEEEEccCchhCCCc--C-----------------CC----CCccEEEE
Confidence 79999999999999999 9999999999 99999999999887400 0 00 00133333
Q ss_pred eecCCCCeeeeeeccccCCCCCCCccccccCCCCCccccchhhcccccccccCCCCCCeEEEEecC-CCCChhHHHHHHH
Q 008869 169 VGYLPGLKVDAIPLLRRKEVPVDDTYVDVYLAPPVPMIDQFVMDIQNYTTSVSGCASPVGIIMFGK-EDMDQKPIIEKLD 247 (550)
Q Consensus 169 vg~lP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~di~~~~~~~s~~~~p~~~lv~~D-~~~d~~~ll~~L~ 247 (550)
.|+...++++-....... .|++. ...+++.++..++. ......+|+|.| .+.+.++++++|.
T Consensus 57 --~~~~~~~~~~~~~~~~~~------~~~~~-~~~~~~~~~~~~~~--------~~~~~~~l~~~d~~~~~~~~~l~~l~ 119 (198)
T PF08495_consen 57 --GFSSSEVRVFASLIDPFS------EDPIE-AAREALRDLVKSLD--------SDPSPFLLLFADGLSSSEEELLEGLY 119 (198)
T ss_pred --EecCCcEEEEEEEccccC------CCcHH-HHHHHHHHHHhhcc--------ccCCcEEEEEeCCCCcCHHHHHHHHH
Confidence 345666655543221110 00000 11222222221111 111478999999 9999999999996
Q ss_pred hhcCCCceEEccccccccccCCCccccccCCCccccCeEEEEEecCCCCCCCCCCEEEEEEeccCCeecCCCeEEEeecc
Q 008869 248 YAMSMNTVFVGDERSRFAYRSGDDLRNVCGNPAFISDAVALVFASDKDKPHGTGEIQFHLAMSEGVSAIGPRHKAVSVRA 327 (550)
Q Consensus 248 ~al~~~~~I~GGla~~~~~~~gd~sr~~~~~~v~~~g~vgv~fa~d~~~~~~~g~i~~~~~vsqGc~PiGp~~~VT~v~~ 327 (550)
.....+++|+||.+++...... ...+.+++++.+|+++++| .+++++.+.+.|||+|+|++++||
T Consensus 120 ~~~~~~~~i~GG~a~~~~~~~~--~~v~~~~~~~~~g~v~~~~---------~~~l~~~~~~~~g~~p~g~~~~VT---- 184 (198)
T PF08495_consen 120 SSVGPDIPIFGGSAGDNLDFER--TYVFANGQVYSDGAVVVAF---------SGSLKIDSFVSHGWEPIGKPMTVT---- 184 (198)
T ss_pred HhcCCCceEEEEECCCCCcCCc--eEEEEeeeeccCcEEEEEE---------cCCceEEEEEecCeEeCCCCEEEE----
Confidence 6666789999999996432111 2233378877888999999 789999999999999999999999
Q ss_pred ccccCcceeccccccccccccCch
Q 008869 328 NHAEGSTWLTAKREGHHVILDGEQ 351 (550)
Q Consensus 328 ~~se~Nv~l~~~~~g~l~eLDG~p 351 (550)
++++|+ |+||||+|
T Consensus 185 -~a~~~~---------I~eld~~P 198 (198)
T PF08495_consen 185 -KAEGNI---------IYELDGRP 198 (198)
T ss_pred -EecCCE---------EEEECCcC
Confidence 999999 99999998
No 4
>PF10442 FIST_C: FIST C domain; InterPro: IPR019494 This entry represents a novel sensory domain, designated FIST C (short for F-box and intracellular signal transduction, C-terminal), which is present in signal transduction proteins from bacteria, archaea and eukaryotes. The chromosomal proximity of FIST-encoding genes to those coding for proteins involved in amino acid metabolism and transport suggest that FIST domains bind small ligands, such as amino acids [].
Probab=99.72 E-value=2.1e-17 Score=150.29 Aligned_cols=96 Identities=26% Similarity=0.380 Sum_probs=83.7
Q ss_pred eeeeeeccccccCc-ccceeeccCCCCCCEEEEEccCHHHHHHHHHHHHHHHHHhhhccCCCCcccccccccccCCCcee
Q 008869 388 ITTLAFHGIRGGDQ-EYLYVDGVGIKTGDYFQFYQPDHNAALAACRNASENIRNLKLNSSGKGFLGRRDVANSIDRKEVL 466 (550)
Q Consensus 388 vR~l~v~~ilG~D~-~~~i~~~~~I~~G~~vqf~~RD~~aA~~dl~~~~~~lr~l~~~~~~~~~~~~~~~~~~~~~~~p~ 466 (550)
+|.+ +++|+ +.+|+++.+|++|+.|+||.+|.+...++++++++++ . ..+|.
T Consensus 37 ir~~-----~~~~~~~gsl~~~~~v~eG~~v~l~~~~~~~~~~~~~~~~~~~-------~---------------~~~p~ 89 (136)
T PF10442_consen 37 IRSP-----LAIDPEDGSLTFAGDVPEGSEVQLMEGDPEDIIESAEEALEKA-------P---------------GPPPE 89 (136)
T ss_pred Eeee-----eEEcCCCCEEEEeeecCCCCEEEEEcCCHHHHHHHHHHHHHhh-------c---------------CCCce
Confidence 6655 99999 5599999999999999999999999998888766554 1 35799
Q ss_pred EEEEEeeCCCCcCCCC-CCccchHhHHhhCCC-CceeeeccccccCC
Q 008869 467 GGFIFSCCGRGNSFFG-GLNVDSFPFFENFPS-APLAGIFCGGEIGR 511 (550)
Q Consensus 467 gaL~fSC~GRG~~lfg-~~~~E~~~vre~Lg~-vPLaGFfa~GEIgp 511 (550)
++|+|+|.||. .+++ ..+.|++.+++.+|+ +|++||||||||+|
T Consensus 90 ~~l~f~C~~R~-~~l~~~~~~e~~~~~~~~~~~~p~~Gf~t~GEi~~ 135 (136)
T PF10442_consen 90 GALIFSCIGRR-LFLGERFDEELEAFQEILGGDAPFIGFYTYGEIGP 135 (136)
T ss_pred EEEEEECCCCH-HHhCcchHHHHHHHHHHhCCCCCEEEEcccccccc
Confidence 99999999994 5555 788999999999994 99999999999998
No 5
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=96.84 E-value=0.00055 Score=51.30 Aligned_cols=36 Identities=28% Similarity=0.422 Sum_probs=30.5
Q ss_pred ccHHHHHHHHhhcCccccchhhhhcchhHHHhhhhh
Q 008869 23 DCEDVLHNILSRLPAKSFASAACVNKSWNCVCNSIL 58 (550)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 58 (550)
-++|++++|+++||..+....++|||+|++.|.+.-
T Consensus 6 LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~~~~ 41 (48)
T PF00646_consen 6 LPDEILQEILSYLDPKDLLRLSLVSKRWRSLVDSPR 41 (48)
T ss_dssp S-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTTHH
T ss_pred CCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHcCCC
Confidence 468999999999999999999999999999998754
No 6
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=96.66 E-value=0.00083 Score=50.57 Aligned_cols=34 Identities=21% Similarity=0.402 Sum_probs=29.8
Q ss_pred ccHHHHHHHHhhcCccccchhhhhcchhHHHhhh
Q 008869 23 DCEDVLHNILSRLPAKSFASAACVNKSWNCVCNS 56 (550)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 (550)
..+|++.+|++.||....+.+++|||.|+++|+.
T Consensus 4 LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~~~ 37 (47)
T PF12937_consen 4 LPDEILLEIFSYLDPRDLLRLSLVCRRWRRIAND 37 (47)
T ss_dssp S-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHHTC
T ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHCC
Confidence 3589999999999999999999999999999953
No 7
>smart00256 FBOX A Receptor for Ubiquitination Targets.
Probab=96.08 E-value=0.003 Score=45.13 Aligned_cols=33 Identities=30% Similarity=0.624 Sum_probs=30.4
Q ss_pred cHHHHHHHHhhcCccccchhhhhcchhHHHhhh
Q 008869 24 CEDVLHNILSRLPAKSFASAACVNKSWNCVCNS 56 (550)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 (550)
.+|++.+|+++||....+.+++|||+|+.+|..
T Consensus 2 P~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~~ 34 (41)
T smart00256 2 PDEILEEILSKLPPKDLLRLRKVSRRWRSLIDS 34 (41)
T ss_pred CHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Confidence 479999999999999999999999999999854
No 8
>PF10442 FIST_C: FIST C domain; InterPro: IPR019494 This entry represents a novel sensory domain, designated FIST C (short for F-box and intracellular signal transduction, C-terminal), which is present in signal transduction proteins from bacteria, archaea and eukaryotes. The chromosomal proximity of FIST-encoding genes to those coding for proteins involved in amino acid metabolism and transport suggest that FIST domains bind small ligands, such as amino acids [].
Probab=83.47 E-value=2.5 Score=38.19 Aligned_cols=67 Identities=24% Similarity=0.282 Sum_probs=44.5
Q ss_pred ceeeeecCCCChHHHHHHHHHHHhcCCCCCCeEEe--eccc----C--cchHHHHHHHHHhcCCCCceEEeeecccccc
Q 008869 62 RIASACSFKASAPIALQEVLDKVLLEPIRPHFAIA--NVGR----G--FNMRRTLDFLVKHLGLRTPIILSVVHGVMGR 132 (550)
Q Consensus 62 k~~~a~S~~p~~~~A~~ev~~q~l~~~~~P~~aia--~~~~----g--fd~~~~l~~i~~~~~~~~p~I~~~~~Giig~ 132 (550)
++-.....--+..+++++++.++ ...+|.+++. |++. | ++.+ ++.+++.++..+|++|+.+.|+|++
T Consensus 61 ~v~l~~~~~~~~~~~~~~~~~~~--~~~~p~~~l~f~C~~R~~~l~~~~~~e--~~~~~~~~~~~~p~~Gf~t~GEi~~ 135 (136)
T PF10442_consen 61 EVQLMEGDPEDIIESAEEALEKA--PGPPPEGALIFSCIGRRLFLGERFDEE--LEAFQEILGGDAPFIGFYTYGEIGP 135 (136)
T ss_pred EEEEEcCCHHHHHHHHHHHHHhh--cCCCceEEEEEECCCCHHHhCcchHHH--HHHHHHHhCCCCCEEEEcccccccc
Confidence 33333333333345555555555 4477888777 6666 2 2333 8889999997899999999999874
No 9
>PF08495 FIST: FIST N domain; InterPro: IPR013702 The FIST N domain is a novel sensory domain, which is present in signal transduction proteins from Bacteria, Archaea and Eukarya. Chromosomal proximity of FIST-encoding genes to those coding for proteins involved in amino acid metabolism and transport suggest that FIST domains bind small ligands, such as amino acids [].
Probab=65.59 E-value=11 Score=35.61 Aligned_cols=58 Identities=19% Similarity=0.137 Sum_probs=41.1
Q ss_pred ceeEEEEEeeCCCCcCCCCCCccchHhHHhhCCCCceeeeccccccCCCCCccCCCCCCCCCCcccccccccceeeeee
Q 008869 464 EVLGGFIFSCCGRGNSFFGGLNVDSFPFFENFPSAPLAGIFCGGEIGRGKLSMTGQESQEESPAERRYLHVYSTAYLVI 542 (550)
Q Consensus 464 ~p~gaL~fSC~GRG~~lfg~~~~E~~~vre~Lg~vPLaGFfa~GEIgp~~~~~~~g~~~~~~~~~~~~LH~yT~vl~lf 542 (550)
+|.++++|++.. +.....=.+.+++.||+.+++|.-+.|||..+ ...+|+.+.+++.|
T Consensus 1 ~p~lvi~f~s~~-----~~~~~~i~~~l~~~~p~~~iiG~st~g~i~~~----------------~~~~~~~~v~~~~~ 58 (198)
T PF08495_consen 1 RPDLVILFCSPE-----YDEEAKILEALRERLPDAPIIGCSTAGEICGG----------------NEGYSDDGVSLLGF 58 (198)
T ss_pred CCEEEEEEecch-----hhhhHHHHHHHHHHCCCCcEEEEccCchhCCC----------------cCCCCCccEEEEEe
Confidence 367888888743 21111146789999999999999999999881 34566666666666
No 10
>PF12000 Glyco_trans_4_3: Gkycosyl transferase family 4 group; InterPro: IPR022623 This presumed domain is functionally uncharacterised and found in bacteria. This region is about 170 amino acids in length and is found N-terminal to PF00534 from PFAM. There is a single completely conserved residue G that may be functionally important.
Probab=36.34 E-value=1.2e+02 Score=29.64 Aligned_cols=67 Identities=25% Similarity=0.302 Sum_probs=47.2
Q ss_pred CCCCEEEEEccCHHHHHHHHHHHHHHHHHhhhccCCCCcccccccccccCCCceeEEEEEeeCCCCcCCCCCCccchHhH
Q 008869 412 KTGDYFQFYQPDHNAALAACRNASENIRNLKLNSSGKGFLGRRDVANSIDRKEVLGGFIFSCCGRGNSFFGGLNVDSFPF 491 (550)
Q Consensus 412 ~~G~~vqf~~RD~~aA~~dl~~~~~~lr~l~~~~~~~~~~~~~~~~~~~~~~~p~gaL~fSC~GRG~~lfg~~~~E~~~v 491 (550)
.+......+.++.+++..--+.+++.+++|+++ +..|- +++.=.|=|+.|| +
T Consensus 31 ~~~~~~~~~~~~~e~~~~rg~av~~a~~~L~~~-----------------Gf~PD--vI~~H~GWGe~Lf---------l 82 (171)
T PF12000_consen 31 GPTPGTHPYVRDFEAAVLRGQAVARAARQLRAQ-----------------GFVPD--VIIAHPGWGETLF---------L 82 (171)
T ss_pred CCCCCCCcccccHHHHHHHHHHHHHHHHHHHHc-----------------CCCCC--EEEEcCCcchhhh---------H
Confidence 445556668889998776666666666666553 33443 5666778887765 8
Q ss_pred HhhCCCCceeeeccc
Q 008869 492 FENFPSAPLAGIFCG 506 (550)
Q Consensus 492 re~Lg~vPLaGFfa~ 506 (550)
++.||++|+++++-+
T Consensus 83 kdv~P~a~li~Y~E~ 97 (171)
T PF12000_consen 83 KDVFPDAPLIGYFEF 97 (171)
T ss_pred HHhCCCCcEEEEEEE
Confidence 899999999998643
No 11
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=29.62 E-value=32 Score=37.37 Aligned_cols=29 Identities=38% Similarity=0.543 Sum_probs=27.0
Q ss_pred HHHHHHHHhhcCccccchhhhhcchhHHH
Q 008869 25 EDVLHNILSRLPAKSFASAACVNKSWNCV 53 (550)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 53 (550)
|.+.+|||+-|-|+|+-++-=|||+|.++
T Consensus 84 ~hi~e~ilsyld~~sLc~celv~k~W~r~ 112 (499)
T KOG0281|consen 84 DHIAENILSYLDALSLCACELVCKEWKRV 112 (499)
T ss_pred HHHHHHHHHhcchhhhhHHHHHHHHHHHH
Confidence 78999999999999999999999999875
No 12
>COG3287 Uncharacterized conserved protein [Function unknown]
Probab=27.22 E-value=1.1e+02 Score=33.60 Aligned_cols=44 Identities=23% Similarity=0.137 Sum_probs=34.8
Q ss_pred CceeEEEEEeeCCCCcCCCCCCccchHhHHhhCCCCceeeeccccccCC
Q 008869 463 KEVLGGFIFSCCGRGNSFFGGLNVDSFPFFENFPSAPLAGIFCGGEIGR 511 (550)
Q Consensus 463 ~~p~gaL~fSC~GRG~~lfg~~~~E~~~vre~Lg~vPLaGFfa~GEIgp 511 (550)
.++-.+++|+|--|=. ...=+++++..+|+++++|.=+.|||.|
T Consensus 29 ~~~~~~~ifF~~~~~~-----~~~l~~~l~~~~pg~~liGCSTaGeitp 72 (379)
T COG3287 29 DRSDFVLIFFSPERDE-----HVQLASALKQAFPGICLIGCSTAGEITP 72 (379)
T ss_pred CCCCeEEEEecccccc-----HHHHHHHHHhhCCCCeEeccccCceEcc
Confidence 4577888888865532 1235688999999999999999999997
No 13
>COG0635 HemN Coproporphyrinogen III oxidase and related Fe-S oxidoreductases [Coenzyme metabolism]
Probab=23.86 E-value=67 Score=35.38 Aligned_cols=70 Identities=21% Similarity=0.182 Sum_probs=44.5
Q ss_pred hhhhhcchhHHHhhhhhcccceeeeecCCCChHHHHHHHHHHHhcCC-CCCCeEEeecccC----cc---hHHHHHHHHH
Q 008869 42 SAACVNKSWNCVCNSILSRPRIASACSFKASAPIALQEVLDKVLLEP-IRPHFAIANVGRG----FN---MRRTLDFLVK 113 (550)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~k~~~a~S~~p~~~~A~~ev~~q~l~~~-~~P~~aia~~~~g----fd---~~~~l~~i~~ 113 (550)
.-=|++|||+|-||.+..+.. ......-+|+.+=+.+..... .+..+--.++|-| ++ ++.++..|++
T Consensus 41 iPFC~~~C~YC~fn~~~~~~~-----~~~~~Y~~aL~~Ei~~~~~~~~~~~~v~ti~~GGGTPslL~~~~l~~ll~~l~~ 115 (416)
T COG0635 41 IPFCVSKCPYCDFNSHVTKRG-----QPVDEYLDALLEEIELVAALLGGQREVKTIYFGGGTPSLLSPEQLERLLKALRE 115 (416)
T ss_pred cccccccCCCCCCeeeccCCC-----ChHHHHHHHHHHHHHHHHhhcCCCCeEEEEEECCCccccCCHHHHHHHHHHHHH
Confidence 445999999999999876644 111123344444444444433 2234666688877 33 7888999999
Q ss_pred hcC
Q 008869 114 HLG 116 (550)
Q Consensus 114 ~~~ 116 (550)
++.
T Consensus 116 ~~~ 118 (416)
T COG0635 116 LFN 118 (416)
T ss_pred hcc
Confidence 984
No 14
>COG4693 PchG Oxidoreductase (NAD-binding), involved in siderophore biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=23.86 E-value=83 Score=33.45 Aligned_cols=52 Identities=19% Similarity=0.374 Sum_probs=41.9
Q ss_pred cchhHHHhhhhhcccceeeeecCCCChHHHHHHHHHHHhcC--C--CCCCeEEeecccCcchHHHHHHHHHhcCC
Q 008869 47 NKSWNCVCNSILSRPRIASACSFKASAPIALQEVLDKVLLE--P--IRPHFAIANVGRGFNMRRTLDFLVKHLGL 117 (550)
Q Consensus 47 ~~~~~~~~~~~~~~~k~~~a~S~~p~~~~A~~ev~~q~l~~--~--~~P~~aia~~~~gfd~~~~l~~i~~~~~~ 117 (550)
.-||...|.- .+++|..|+.++++.+..+ | .++++.++ +..+|+.|.++.|.
T Consensus 283 p~sw~~~cev------------v~~~~psai~haLre~~ag~spv~~q~~~~la-------l~qlWq~imek~Gn 338 (361)
T COG4693 283 PLSWADLCEV------------VQRLWPSAIAHALRELAAGDSPVRAQNQRSLA-------LAQLWQRIMEKLGN 338 (361)
T ss_pred cchHHHHHHH------------hhcccHHHHHHHHHHHhcCCCcccCchHHHHH-------HHHHHHHHHHHcCC
Confidence 3478877763 4789999999999998874 3 55567778 99999999999995
No 15
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=21.17 E-value=52 Score=35.95 Aligned_cols=33 Identities=24% Similarity=0.388 Sum_probs=26.6
Q ss_pred ccHHHHHHHHhhcCcc-ccchhhhhcchhHHHhh
Q 008869 23 DCEDVLHNILSRLPAK-SFASAACVNKSWNCVCN 55 (550)
Q Consensus 23 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 55 (550)
-.+|||..|.+|||.. =..-..+||++|+..-.
T Consensus 7 Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~ 40 (373)
T PLN03215 7 LPEELLHMIAGRLFSNVELKRFRSICRSWRSSVS 40 (373)
T ss_pred CCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhcc
Confidence 3689999999999764 46777899999998533
No 16
>PRK02842 light-independent protochlorophyllide reductase subunit N; Provisional
Probab=20.26 E-value=2.5e+02 Score=30.77 Aligned_cols=93 Identities=13% Similarity=0.145 Sum_probs=64.1
Q ss_pred cccchhhhhcchhHHHhhhhhcccceeeeecCCCC------hHHHHHHHHHHHhcCCCCCCeEEeecc-----cCcchHH
Q 008869 38 KSFASAACVNKSWNCVCNSILSRPRIASACSFKAS------APIALQEVLDKVLLEPIRPHFAIANVG-----RGFNMRR 106 (550)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~k~~~a~S~~p~------~~~A~~ev~~q~l~~~~~P~~aia~~~-----~gfd~~~ 106 (550)
+.-...+|..-.|+....+++.+|.+++..=...| -.+.+++++.+++.+-.+|.+..++.+ +|=|.+.
T Consensus 39 lvhGp~gCa~~~~~~~~~~~~~~~~~~tt~l~E~div~~~Gg~~~L~~ai~ei~~~~~~P~~I~V~tTC~~e~IGDDi~~ 118 (427)
T PRK02842 39 LVVGSRTCAHLLQSAAGVMIFAEPRFGTAILEEGDLAGLADANEELDRVVEELIKRRPNISVLFLVGSCPSEVIKLDLEG 118 (427)
T ss_pred EEecCCcchhhhhhhcccEeecCCccceeccCcchhhhcCCcHHHHHHHHHHHHhccCCCCEEEEECCChHHhhcCCHHH
Confidence 44567899988888766678889998652221222 245667777776666568887665444 4677888
Q ss_pred HHHHHHHhcCCCCceEEeeeccccc
Q 008869 107 TLDFLVKHLGLRTPIILSVVHGVMG 131 (550)
Q Consensus 107 ~l~~i~~~~~~~~p~I~~~~~Giig 131 (550)
+.+-+++++. +.|+|..-+.|.-|
T Consensus 119 v~~e~~~~~~-~~pvv~v~t~Gf~g 142 (427)
T PRK02842 119 LAERLSTEFA-GVPVLNYSGSGLET 142 (427)
T ss_pred HHHHhhcccC-CCeEEEeeCCCccc
Confidence 8888877754 68998888888655
Done!