Query 008869
Match_columns 550
No_of_seqs 185 out of 293
Neff 5.3
Searched_HMMs 29240
Date Mon Mar 25 13:37:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008869.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008869hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1fs1_A SKP2 F-BOX, cyclin A/CD 97.1 0.00023 7.8E-09 53.6 2.6 33 23-55 12-44 (53)
2 2e31_A FBS1, F-box only protei 95.3 0.006 2.1E-07 62.3 2.2 34 22-55 53-87 (297)
3 1p22_A F-BOX/WD-repeat protein 91.5 0.065 2.2E-06 54.6 2.0 30 26-55 21-50 (435)
4 3v7d_B Cell division control p 90.7 0.083 2.8E-06 53.7 1.9 33 24-56 19-51 (464)
5 2ovr_B FBW7, F-BOX/WD repeat p 86.5 0.23 7.9E-06 50.4 1.8 32 24-55 23-54 (445)
6 3l2o_B F-box only protein 4; s 83.7 0.36 1.2E-05 49.5 1.7 33 24-56 9-41 (312)
7 2ast_B S-phase kinase-associat 82.0 0.48 1.7E-05 46.4 1.8 33 23-55 12-44 (336)
8 3ogk_B Coronatine-insensitive 79.6 0.53 1.8E-05 50.0 1.2 42 14-55 7-49 (592)
9 2p1m_B Transport inhibitor res 77.5 0.88 3E-05 48.2 2.1 33 24-56 10-43 (594)
10 4g9p_A 4-hydroxy-3-methylbut-2 11.4 2.3E+02 0.0077 30.0 4.9 52 76-128 277-347 (406)
No 1
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E
Probab=97.09 E-value=0.00023 Score=53.65 Aligned_cols=33 Identities=21% Similarity=0.268 Sum_probs=31.0
Q ss_pred ccHHHHHHHHhhcCccccchhhhhcchhHHHhh
Q 008869 23 DCEDVLHNILSRLPAKSFASAACVNKSWNCVCN 55 (550)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 (550)
-.+|++.+||++||....+.++||||.|+.+++
T Consensus 12 LP~eil~~I~~~L~~~dl~~~~~Vck~w~~~~~ 44 (53)
T 1fs1_A 12 LPDELLLGIFSCLCLPELLKVSGVCKRWYRLAS 44 (53)
T ss_dssp SCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHT
T ss_pred CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC
Confidence 468999999999999999999999999999886
No 2
>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A
Probab=95.27 E-value=0.006 Score=62.31 Aligned_cols=34 Identities=24% Similarity=0.391 Sum_probs=31.2
Q ss_pred cccHHHHHHHHhhcCccccc-hhhhhcchhHHHhh
Q 008869 22 ADCEDVLHNILSRLPAKSFA-SAACVNKSWNCVCN 55 (550)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 55 (550)
...+|||..||+|||+.+.+ .++||||.|+.+.+
T Consensus 53 ~LP~ell~~Il~~Lp~~~L~~r~~~VCk~Wr~l~~ 87 (297)
T 2e31_A 53 ELPEPLLLRVLAELPATELVQACRLVCLRWKELVD 87 (297)
T ss_dssp SSCHHHHHHHHHTSCHHHHHHTGGGTCHHHHHHHT
T ss_pred hCCHHHHHHHHHcCCHHHHHHHHHHHhHHHHHHhc
Confidence 34789999999999999999 99999999998875
No 3
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=91.50 E-value=0.065 Score=54.56 Aligned_cols=30 Identities=43% Similarity=0.555 Sum_probs=28.2
Q ss_pred HHHHHHHhhcCccccchhhhhcchhHHHhh
Q 008869 26 DVLHNILSRLPAKSFASAACVNKSWNCVCN 55 (550)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 (550)
+|+..||+.|++.+++.++||||.|+.+++
T Consensus 21 ~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~ 50 (435)
T 1p22_A 21 HIAENILSYLDAKSLCAAELVCKEWYRVTS 50 (435)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHCHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHhc
Confidence 499999999999999999999999998775
No 4
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=90.69 E-value=0.083 Score=53.68 Aligned_cols=33 Identities=15% Similarity=0.276 Sum_probs=31.0
Q ss_pred cHHHHHHHHhhcCccccchhhhhcchhHHHhhh
Q 008869 24 CEDVLHNILSRLPAKSFASAACVNKSWNCVCNS 56 (550)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 (550)
.++|+..||+.||+.++..+++|||.||++++.
T Consensus 19 p~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~ 51 (464)
T 3v7d_B 19 PFEISLKIFNYLQFEDIINSLGVSQNWNKIIRK 51 (464)
T ss_dssp CHHHHHHHHTTSCHHHHHHHHTTCHHHHHHHTT
T ss_pred CHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcC
Confidence 578999999999999999999999999998875
No 5
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=86.54 E-value=0.23 Score=50.41 Aligned_cols=32 Identities=22% Similarity=0.321 Sum_probs=30.1
Q ss_pred cHHHHHHHHhhcCccccchhhhhcchhHHHhh
Q 008869 24 CEDVLHNILSRLPAKSFASAACVNKSWNCVCN 55 (550)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 (550)
.++++..||+.|++.+.+.++||||.|+.+|+
T Consensus 23 p~e~~~~i~~~l~~~~l~~~~~v~~~~~~~~~ 54 (445)
T 2ovr_B 23 PKELALYVLSFLEPKDLLQAAQTCRYWRILAE 54 (445)
T ss_dssp CHHHHHHHHTTSCHHHHHHHTTSCHHHHHHHT
T ss_pred CHHHHHHHHHhCCHHHHHHHHHHhHHHHhhcC
Confidence 58999999999999999999999999999876
No 6
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=83.71 E-value=0.36 Score=49.46 Aligned_cols=33 Identities=27% Similarity=0.311 Sum_probs=30.8
Q ss_pred cHHHHHHHHhhcCccccchhhhhcchhHHHhhh
Q 008869 24 CEDVLHNILSRLPAKSFASAACVNKSWNCVCNS 56 (550)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 (550)
..|++++||+-|++...+.++||||.|+.+++.
T Consensus 9 P~ei~l~IlsfL~p~DL~~l~~vcr~Wr~la~D 41 (312)
T 3l2o_B 9 PIDVQLYILSFLSPHDLCQLGSTNHYWNETVRD 41 (312)
T ss_dssp CHHHHHHHHHTSCHHHHHHHHTTCHHHHHHHTC
T ss_pred CHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcc
Confidence 479999999999999999999999999999874
No 7
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=82.04 E-value=0.48 Score=46.44 Aligned_cols=33 Identities=21% Similarity=0.268 Sum_probs=30.8
Q ss_pred ccHHHHHHHHhhcCccccchhhhhcchhHHHhh
Q 008869 23 DCEDVLHNILSRLPAKSFASAACVNKSWNCVCN 55 (550)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 (550)
-.+|++..|++.||......++.|||.|+.+|.
T Consensus 12 LP~eil~~If~~L~~~d~~~~~~vc~~W~~~~~ 44 (336)
T 2ast_B 12 LPDELLLGIFSCLCLPELLKVSGVCKRWYRLAS 44 (336)
T ss_dssp SCHHHHHHHHTTSCHHHHHHTTSSCHHHHHHHT
T ss_pred CCHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhc
Confidence 478999999999999999999999999999983
No 8
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=79.61 E-value=0.53 Score=49.99 Aligned_cols=42 Identities=24% Similarity=0.419 Sum_probs=33.2
Q ss_pred ceEEeecccccHHHHHHHHhhc-CccccchhhhhcchhHHHhh
Q 008869 14 KTIEISSLADCEDVLHNILSRL-PAKSFASAACVNKSWNCVCN 55 (550)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 55 (550)
|.+..++..-.+|++..||+.| |....+.++.|||+|+.+..
T Consensus 7 ~r~~~~~~~LPdeil~~I~~~L~~~~d~~~~s~vck~W~~~~~ 49 (592)
T 3ogk_B 7 KRCKLSCVATVDDVIEQVMTYITDPKDRDSASLVCRRWFKIDS 49 (592)
T ss_dssp -----CCCCCGGGTHHHHHTTCCCHHHHHHHTTSCHHHHHHHH
T ss_pred hhHhhccCCCCHHHHHHHHHhcCCHHHHHHHHHHhHHHHHhhh
Confidence 4456666677899999999999 89999999999999999953
No 9
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=77.45 E-value=0.88 Score=48.19 Aligned_cols=33 Identities=30% Similarity=0.351 Sum_probs=29.6
Q ss_pred cHHHHHHHHhhcC-ccccchhhhhcchhHHHhhh
Q 008869 24 CEDVLHNILSRLP-AKSFASAACVNKSWNCVCNS 56 (550)
Q Consensus 24 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 56 (550)
.+|+++.||++|| ....+.++.|||+|+.++..
T Consensus 10 PdevL~~If~~L~~~~d~~~~s~vck~W~~~~~~ 43 (594)
T 2p1m_B 10 PEEVLEHVFSFIQLDKDRNSVSLVCKSWYEIERW 43 (594)
T ss_dssp CHHHHHHHHHTCCCHHHHHHHHTSCHHHHHHHHH
T ss_pred CHHHHHHHHhhcCCchhHHHHHHHHHHHHHhhhh
Confidence 5899999999999 78889999999999999544
No 10
>4g9p_A 4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth; oxidoreductase, isoprenoid biosynthesis, non mevalonate PATH iron-sulphur-cluster; HET: CDI MES; 1.55A {Thermus thermophilus} PDB: 2y0f_A*
Probab=11.41 E-value=2.3e+02 Score=30.01 Aligned_cols=52 Identities=23% Similarity=0.333 Sum_probs=28.3
Q ss_pred HHHHHHHHHhcCCCCCCeEEeecccC---cch------------HHHHHHHHHhcC----CCCceEEeeecc
Q 008869 76 ALQEVLDKVLLEPIRPHFAIANVGRG---FNM------------RRTLDFLVKHLG----LRTPIILSVVHG 128 (550)
Q Consensus 76 A~~ev~~q~l~~~~~P~~aia~~~~g---fd~------------~~~l~~i~~~~~----~~~p~I~~~~~G 128 (550)
+..|.|+.+--....|.+ |+|=++| ||+ +..+.-|+..|+ -.+-+.||+.+|
T Consensus 277 va~~ILqslglR~~~~~i-iSCPtCGRt~~d~~~~la~~v~~~l~~~~~~~~~~~~~~~~l~VAVMGCvVNG 347 (406)
T 4g9p_A 277 VAQEILQALGLRAFAPEV-TSCPGCGRTTSTFFQELAEEVSRRLKERLPEWRARYPGVEELKVAVMGCVVNG 347 (406)
T ss_dssp HHHHHHHHTTSCCCSCEE-EECCCCTTSCHHHHHHHHHHHHHHHHHHHHHHHHHSTTGGGCEEEEESSTTTH
T ss_pred HHHHHHHHhCCcccCCCc-ccCCCCCcCcchHHHHHHHHHHHHHhhhhhhhhhccCCCCCCEEEEECCcccC
Confidence 445555544444456664 6677777 672 222233344444 346677787777
Done!