BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008870
(550 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2FQ3|A Chain A, Structure And Function Of The Swirm Domain, A Conserved
Protein Module Found In Chromatin Regulatory Complexes
Length = 104
Score = 71.2 bits (173), Expect = 1e-12, Method: Composition-based stats.
Identities = 33/85 (38%), Positives = 48/85 (56%), Gaps = 1/85 (1%)
Query: 186 HSDWFSPDTVHRLERQVVPHFFSGKSPDHTPEKYMECRNHIVAKYMDNPEKRLIVSDCQG 245
+S WF+ + +H +E Q +P FF+ + P TPE YM RN +V Y NP + V+ +
Sbjct: 16 YSKWFNLEKIHSIEVQSLPEFFTNRIPSKTPEVYMRYRNFMVNSYRLNPNEYFSVTTARR 75
Query: 246 LVDGVSPEDLTRIFRFLNHWGIINY 270
V G L R+ +FL WG+INY
Sbjct: 76 NVSG-DAAALFRLHKFLTKWGLINY 99
>pdb|2YUS|A Chain A, Solution Structure Of The Sant Domain Of Human SwiSNF-
Related Matrix-Associated Actin-Dependent Regulator Of
Chromatin Subfamily C Member 1
Length = 79
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/64 (51%), Positives = 49/64 (76%)
Query: 395 AREYGDIDGETWSDQETFLLLEGIEMYNDNWNEIAEHVSTKSKAQCILHFVRLPMEDGIL 454
A+ G G W++QET LLLE +EMY D+WN+++EHV ++++ +CILHF+RLP+ED L
Sbjct: 10 AKSKGASAGREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRLPIEDPYL 69
Query: 455 ENVE 458
EN +
Sbjct: 70 ENSD 73
>pdb|2DCE|A Chain A, Solution Structure Of The Swirm Domain Of Human Kiaa1915
Protein
Length = 111
Score = 38.1 bits (87), Expect = 0.013, Method: Composition-based stats.
Identities = 25/85 (29%), Positives = 43/85 (50%), Gaps = 14/85 (16%)
Query: 193 DTVHRLERQVVPHFFSGKSPDHTPEKYMECRNHIV-------AKYMDNPEKRLIVSDCQG 245
+ + E+Q +P FF G+ TPE+Y++ RN+I+ KY++ R + +C G
Sbjct: 25 NIIQEEEKQAIPEFFEGRQAK-TPERYLKIRNYILDQWEICKPKYLNKTSVRPGLKNC-G 82
Query: 246 LVDGVSPEDLTRIFRFLNHWGIINY 270
V+ + RI +L G IN+
Sbjct: 83 DVNCIG-----RIHTYLELIGAINF 102
>pdb|1X41|A Chain A, Solution Structure Of The Myb-Like Dna Binding Domain Of
Human Transcriptional Adaptor 2-Like, Isoform B
Length = 60
Score = 33.9 bits (76), Expect = 0.22, Method: Composition-based stats.
Identities = 14/43 (32%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Query: 405 TWSDQETFLLLEGI-EMYNDNWNEIAEHVSTKSKAQCILHFVR 446
+W+ QE LLE + + NW ++A + TK+K +C H+++
Sbjct: 10 SWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMK 52
>pdb|1XC5|A Chain A, Solution Structure Of The Smrt Deacetylase Activation
Domain
Length = 71
Score = 32.3 bits (72), Expect = 0.61, Method: Composition-based stats.
Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Query: 386 SLDYIRVDPAREYGDID-GETWSDQETFLLLEGIEMYNDNWNEIAEHVSTKSKAQCILHF 444
S++ + DP + Y D WS+QE E + N+ IA + K+ A+C+L++
Sbjct: 2 SMNGLMADPMKVYKDRQVMNMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYY 61
>pdb|4A69|C Chain C, Structure Of Hdac3 Bound To Corepressor And Inositol
Tetraphosphate
pdb|4A69|D Chain D, Structure Of Hdac3 Bound To Corepressor And Inositol
Tetraphosphate
Length = 94
Score = 31.2 bits (69), Expect = 1.6, Method: Composition-based stats.
Identities = 16/60 (26%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Query: 386 SLDYIRVDPAREYGDID-GETWSDQETFLLLEGIEMYNDNWNEIAEHVSTKSKAQCILHF 444
+++ + DP + Y D WS+QE E + N+ IA + K+ A+C+L++
Sbjct: 25 NMNGLMADPMKVYKDRQVMNMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYY 84
>pdb|2V7Y|A Chain A, Crystal Structure Of The Molecular Chaperone Dnak From
Geobacillus Kaustophilus Hta426 In Post-Atp Hydrolysis
State
pdb|4ANI|C Chain C, Structural Basis For The Intermolecular Communication
Between Dnak And Grpe In The Dnak Chaperone System From
Geobacillus Kaustophilus Hta426
pdb|4ANI|D Chain D, Structural Basis For The Intermolecular Communication
Between Dnak And Grpe In The Dnak Chaperone System From
Geobacillus Kaustophilus Hta426
pdb|4ANI|G Chain G, Structural Basis For The Intermolecular Communication
Between Dnak And Grpe In The Dnak Chaperone System From
Geobacillus Kaustophilus Hta426
pdb|4ANI|H Chain H, Structural Basis For The Intermolecular Communication
Between Dnak And Grpe In The Dnak Chaperone System From
Geobacillus Kaustophilus Hta426
Length = 509
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 3/65 (4%)
Query: 72 PASNETEVLIDGGTRICEFPTAVQRVVNR-PHVSVM--DIVAIEAAYLAGDASGRSSAVA 128
PA + +L+ G TRI A++R + + PH V ++VAI AA G +G V
Sbjct: 300 PADIDKVILVGGSTRIPAVQEAIKRELGKEPHKGVNPDEVVAIGAAIQGGVIAGEVKDVV 359
Query: 129 LENIS 133
L +++
Sbjct: 360 LLDVT 364
>pdb|2LTP|A Chain A, Solution Structure Of The Sant2 Domain Of The Human
Nuclear Receptor Corepressor 2 (Ncor2), Northeast
Structural Genomics Consortium (Nesg) Target Id Hr4636e
Length = 89
Score = 29.6 bits (65), Expect = 4.1, Method: Composition-based stats.
Identities = 11/37 (29%), Positives = 22/37 (59%)
Query: 404 ETWSDQETFLLLEGIEMYNDNWNEIAEHVSTKSKAQC 440
+ W+++E +G+ + NW+ IA V +K+ +QC
Sbjct: 17 QGWTEEEMGTAKKGLLEHGRNWSAIARMVGSKTVSQC 53
>pdb|2CQR|A Chain A, Solution Structure Of Rsgi Ruh-043, A Myb Dna-Binding
Domain In Human Cdna
Length = 73
Score = 29.6 bits (65), Expect = 4.7, Method: Composition-based stats.
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 4/45 (8%)
Query: 404 ETWSDQETFLLLEGIEMY----NDNWNEIAEHVSTKSKAQCILHF 444
E W+ + LL ++ Y +D W++IA V +KSK CI +
Sbjct: 19 EPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARY 63
>pdb|3AY7|A Chain A, Crystal Structure Of Bacillus Megaterium Glucose
Dehydrogenase 4 G259a Mutant
pdb|3AY7|B Chain B, Crystal Structure Of Bacillus Megaterium Glucose
Dehydrogenase 4 G259a Mutant
Length = 269
Score = 28.9 bits (63), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Query: 475 GGLHSTVNGDLPGAGLQEADMENRLPFSNSGNP--VMALVAFLASA 518
G +++ +N + +Q AD+E+ +P G P V A+ AFLAS+
Sbjct: 197 GAMNTPINAEKFADPVQRADVESMIPMGYIGKPEEVAAVAAFLASS 242
>pdb|3AY6|A Chain A, Crystal Structure Of Bacillus Megaterium Glucose
Dehydrogenase 4 A258f Mutant In Complex With Nadh And
D-Glucose
pdb|3AY6|B Chain B, Crystal Structure Of Bacillus Megaterium Glucose
Dehydrogenase 4 A258f Mutant In Complex With Nadh And
D-Glucose
pdb|3AY6|C Chain C, Crystal Structure Of Bacillus Megaterium Glucose
Dehydrogenase 4 A258f Mutant In Complex With Nadh And
D-Glucose
pdb|3AY6|D Chain D, Crystal Structure Of Bacillus Megaterium Glucose
Dehydrogenase 4 A258f Mutant In Complex With Nadh And
D-Glucose
Length = 269
Score = 28.9 bits (63), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Query: 475 GGLHSTVNGDLPGAGLQEADMENRLPFSNSGNP--VMALVAFLASA 518
G +++ +N + +Q AD+E+ +P G P V A+ AFLAS+
Sbjct: 197 GAMNTPINAEKFADPVQRADVESMIPMGYIGKPEEVAAVAAFLASS 242
>pdb|3AUS|A Chain A, Crystal Structure Of Bacillus Megaterium Glucose
Dehydrogenase 4 In Ligand-Free Form
pdb|3AUS|B Chain B, Crystal Structure Of Bacillus Megaterium Glucose
Dehydrogenase 4 In Ligand-Free Form
pdb|3AUT|A Chain A, Crystal Structure Of Bacillus Megaterium Glucose
Dehydrogenase 4 In Complex With Nadh
pdb|3AUT|B Chain B, Crystal Structure Of Bacillus Megaterium Glucose
Dehydrogenase 4 In Complex With Nadh
pdb|3AUU|A Chain A, Crystal Structure Of Bacillus Megaterium Glucose
Dehydrogenase 4 In Complex With D-Glucose
pdb|3AUU|B Chain B, Crystal Structure Of Bacillus Megaterium Glucose
Dehydrogenase 4 In Complex With D-Glucose
Length = 269
Score = 28.9 bits (63), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Query: 475 GGLHSTVNGDLPGAGLQEADMENRLPFSNSGNP--VMALVAFLASA 518
G +++ +N + +Q AD+E+ +P G P V A+ AFLAS+
Sbjct: 197 GAMNTPINAEKFADPVQRADVESMIPMGYIGKPEEVAAVAAFLASS 242
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.134 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,438,638
Number of Sequences: 62578
Number of extensions: 632462
Number of successful extensions: 1350
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 1345
Number of HSP's gapped (non-prelim): 19
length of query: 550
length of database: 14,973,337
effective HSP length: 104
effective length of query: 446
effective length of database: 8,465,225
effective search space: 3775490350
effective search space used: 3775490350
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)