BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008870
(550 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9XI07|SWI3C_ARATH SWI/SNF complex subunit SWI3C OS=Arabidopsis thaliana GN=SWI3C PE=1
SV=1
Length = 807
Score = 616 bits (1588), Expect = e-175, Method: Compositional matrix adjust.
Identities = 311/487 (63%), Positives = 368/487 (75%), Gaps = 13/487 (2%)
Query: 59 DNGDDFQH--ATAPDPASNETEVLIDGGTRICEFPTAVQRVVNRPHVSVMDIVAIEAAYL 116
+N D+ Q PDP EV+ D G+RI +FP V+RVV RPH SVM +VA E A L
Sbjct: 51 ENADELQQNGGATPDPGLGIGEVVEDSGSRISDFPAVVKRVVIRPHASVMAVVAAERAGL 110
Query: 117 AGDASGRSSAVALENISFGQLQALSVVPADSAALDPERSDTSC---VITPPQIMEGKGVV 173
G+ G+ S ALENISFGQLQALS VPADS LD ERSD S VI+PP IM+G+GVV
Sbjct: 111 IGETRGQGSLPALENISFGQLQALSTVPADS--LDLERSDGSSSAYVISPPPIMDGEGVV 168
Query: 174 KRFGSRVHVLPMHSDWFSPDTVHRLERQVVPHFFSGKSPDHTPEKYMECRNHIVAKYMDN 233
KRFG VHVLPMHSDWF+P+TV RLERQVVP FFSGKSP+HTPE YME RN IV+KY++N
Sbjct: 169 KRFGDLVHVLPMHSDWFAPNTVDRLERQVVPQFFSGKSPNHTPESYMEFRNAIVSKYVEN 228
Query: 234 PEKRLIVSDCQGLVDGVSPEDLTRIFRFLNHWGIINYCAAVQS-PEPWNRGSYLREDSNG 292
PEK L +SDCQGLVDGV ED R+FRFL+HWGIINYCA QS P P S +RED+NG
Sbjct: 229 PEKTLTISDCQGLVDGVDIEDFARVFRFLDHWGIINYCATAQSHPGPLRDVSDVREDTNG 288
Query: 293 EVSVPSDALKSIDSLIKFDKPKCSLKVADVYSS--SCGGADFFDLDNTIRERLSENHCNY 350
EV+VPS AL SIDSLIKFDKP C K +VYSS S G D DLD IRE L ++HCN+
Sbjct: 289 EVNVPSAALTSIDSLIKFDKPNCRHKGGEVYSSLPSLDG-DSPDLDIRIREHLCDSHCNH 347
Query: 351 CSQPIPAVYYQSQKEVDVLLCPECFHEGRFVTGHSSLDYIRVDPAREYGDIDGETWSDQE 410
CS+P+P VY+QSQK+ D+LLC +CFH GRFV GHS LD++RVDP + YGD DG+ W+DQE
Sbjct: 348 CSRPLPTVYFQSQKKGDILLCCDCFHHGRFVVGHSCLDFVRVDPMKFYGDQDGDNWTDQE 407
Query: 411 TFLLLEGIEMYNDNWNEIAEHVSTKSKAQCILHFVRLPMEDGILENVEVPNTSRTSNSSS 470
T LLLE +E+YN+NW +IA+HV +KSKAQCILHF+RLP+EDG+L+NVEV + T N ++
Sbjct: 408 TLLLLEAVELYNENWVQIADHVGSKSKAQCILHFLRLPVEDGLLDNVEVSGVTNTENPTN 467
Query: 471 RDDRGGLHSTVNGDLPGAGLQEADMENRLPFSNSGNPVMALVAFLASAVGPRVAAACAHA 530
D G S NGDLPG Q +D E +LPF S NPVMALVAFLASAVGPRVAA+CAH
Sbjct: 468 GYDHKGTDS--NGDLPGYSEQGSDTEIKLPFVKSPNPVMALVAFLASAVGPRVAASCAHE 525
Query: 531 SLAALSK 537
SL+ LS+
Sbjct: 526 SLSVLSE 532
>sp|Q8VY05|SWI3D_ARATH SWI/SNF complex subunit SWI3D OS=Arabidopsis thaliana GN=SWI3D PE=1
SV=3
Length = 985
Score = 152 bits (385), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 108/300 (36%), Positives = 161/300 (53%), Gaps = 29/300 (9%)
Query: 172 VVKRFGSRVHVLPMHSDWFSPDTVHRLERQVVPHFFSGKSPDHTPEKYMECRNHIVAKYM 231
++ S VHV+P H WFS + +H LE + +P FF+GK T E Y E RN I+ K+
Sbjct: 136 AIRSRDSNVHVVPNHCGWFSWEKIHPLEERSLPSFFNGKLEGRTSEVYREIRNWIMGKFH 195
Query: 232 DNPEKRLIVSDCQGLVDGVSPEDLTRIFRFLNHWGIINYCAAVQSPEPWNRGSYLRE-DS 290
NP ++ + D L G S E + FL++WG+IN+ P + GS + D
Sbjct: 196 SNPNIQIELKDLTELEVGDS-EAKQEVMEFLDYWGLINF----HPFPPTDTGSTASDHDD 250
Query: 291 NGEVSVPSDALKSIDSLIKFD----------KPKCSLKVADVYSSSCGGADFFDLDNTIR 340
G D ++SL +F KP+ + + + S D D ++
Sbjct: 251 LG------DKESLLNSLYRFQVDEACPPLVHKPRFTAQA----TPSGLFPDPMAADELLK 300
Query: 341 ER--LSENHCNYCSQPIPAVYYQSQKEVDVLLCPECFHEGRFVTGHSSLDYIRVDPAREY 398
+ E HCN CS Y K+ D LC ECF+ G+F + SS D+I ++PA
Sbjct: 301 QEGPAVEYHCNSCSADCSRKRYHCPKQADFDLCTECFNSGKFSSDMSSSDFILMEPAEAP 360
Query: 399 GDIDGETWSDQETFLLLEGIEMYNDNWNEIAEHVSTKSKAQCILHFVRLPMEDGILENVE 458
G G+ W+DQET LLLE +E++ +NWNEIAEHV+TK+KAQC+LHF+++P+ED L+ ++
Sbjct: 361 GVGSGK-WTDQETLLLLEALEIFKENWNEIAEHVATKTKAQCMLHFLQMPIEDAFLDQID 419
Score = 38.9 bits (89), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 23/40 (57%)
Query: 496 ENRLPFSNSGNPVMALVAFLASAVGPRVAAACAHASLAAL 535
E F++ GNPVM L AFL G VA A A AS+ +L
Sbjct: 535 EASFSFADLGNPVMGLAAFLVRLAGSDVATASARASIKSL 574
>sp|O14470|SSR2_SCHPO SWI/SNF and RSC complexes subunit ssr2 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=ssr2 PE=1 SV=3
Length = 503
Score = 132 bits (333), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 101/363 (27%), Positives = 166/363 (45%), Gaps = 73/363 (20%)
Query: 182 VLPMHSDWFSPDTVHRLERQVVPHFFSGKSPDHTPEKYMECRNHIVAKYMDNPEKRLIVS 241
++P ++ WF +H +ER+ P FF+GKSP TP Y + R+ ++ Y P + L V+
Sbjct: 19 IVPSYAGWFDMSKIHDIERRSNPEFFNGKSPLKTPSIYKDYRDFMINSYRLEPNEYLTVT 78
Query: 242 DCQ-GLVDGVSPEDLTRIFRFLNHWGIINYCAAVQSPEPWNRGSYLREDSNGEVSVPSDA 300
C+ LV V + R+ FL WG+INY +P R ++ +G V S+
Sbjct: 79 ACRRNLVGDVCA--IIRVHAFLEQWGLINY-----QIDPETRPAFRLPPISGHVQAISNT 131
Query: 301 LKSIDSLIKFDKPKCSLKVADVYSSSCGGA---DFFDLDN-------TIRERLSENHCNY 350
++ P S+ GG+ +F L+ E+ S +
Sbjct: 132 PIVTQEMLAQHPP----------PSTVGGSSSQEFVKLEEKHYSPSLNAMEQTSPKEEDE 181
Query: 351 CSQPIPAV--------------YYQSQKEVDVLLCPECFHEGRFVTGHSSLDYIRVDPAR 396
S +P V +Y + K +CP C+ +GRF + +S D++ +D A
Sbjct: 182 KSDKVPRVDKVCFTCGVNCSQTWYHNLKNKKYDICPNCYKQGRFSSSFNSSDFLCMD-AI 240
Query: 397 EYGDIDGETWSDQETFLLLEGIEMYNDNWNEIAEHVSTKSKAQCILHFVRLPMEDGILEN 456
++ + + WS+QET LLLE IE Y D+WN+IA HV +++K QC++HF+++P+ED
Sbjct: 241 DFNHDEEKPWSNQETLLLLEAIETYGDDWNQIALHVGSRTKEQCLIHFLQIPIED----- 295
Query: 457 VEVPNTSRTSNSSSRDDRGGLHSTVNGDLPGAGLQEADMENRLPFSNSGNPVMALVAFLA 516
P + S +G LPF + NPV++ + +LA
Sbjct: 296 ---PYRQKLQGDFSPFKKGF----------------------LPFDENENPVLSTLTYLA 330
Query: 517 SAV 519
S V
Sbjct: 331 SIV 333
>sp|O13788|SSR1_SCHPO SWI/SNF and RSC complexes subunit ssr1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=ssr1 PE=1 SV=1
Length = 527
Score = 127 bits (319), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 101/363 (27%), Positives = 154/363 (42%), Gaps = 65/363 (17%)
Query: 183 LPMHSDWFSPDTVHRLERQVVPHFFSGKSPDHTPEKYMECRNHIVAKYMDNPEKRLIVSD 242
+P + WF VH +E++ P FF GK+ TPE Y E R+ +++ + N + L +
Sbjct: 54 VPEWAQWFDFSKVHEIEKKQNPEFFDGKNTSKTPEVYKEYRDFMISTFRLNSKVYLTFTA 113
Query: 243 CQGLVDGVSPEDLTRIFRFLNHWGIINYCAAVQSPEPWNRGSYLREDSNGEVSVPSDA-L 301
C+ + G L R+ RFL WG+INY P R S + S + +D
Sbjct: 114 CRRNLAGDVCAVL-RVHRFLEQWGLINYNV-----NPDTRPSKIGPPSTSHFQILADTPR 167
Query: 302 KSIDSLIKFDKPKCSLKVADVYSSSCGGADFFD--LDNTIRER------------LSEN- 346
+ L K + S + +D LD+ ++ + L EN
Sbjct: 168 GLVPLLPPPSSSIPRSKAVTIEDPSIVRTNIYDPSLDDVLKGKGSTPNQKPSLSNLHENN 227
Query: 347 --------HCNYCSQPIPAVYYQSQKEVDVLLCPECFHEGRFVTGHSSLDYIRVDPAREY 398
HC C YYQSQ +C C+ + RF + + DY V +
Sbjct: 228 IDQSDSPQHCYCCGNKFNESYYQSQTAQKYNVCISCYQQNRFPSPTTIADYKEVAIQNKI 287
Query: 399 GDIDGETWSDQETFLLLEGIEMYNDNWNEIAEHVSTKSKAQCILHFVRLPMEDGILENVE 458
D D TW+ QE LL EG+EMY+D+W ++A HV+TKS +CIL F+ LP D L ++
Sbjct: 288 EDDD--TWTAQELVLLSEGVEMYSDDWAKVASHVNTKSVEECILKFLNLPSSDKALFKMD 345
Query: 459 VPNTSRTSNSSSRDDRGGLHSTVNGDLPGAGLQEADMENRLPFSNSGNPVMALVAFLASA 518
+T+ +S L G NP++++V+FLA
Sbjct: 346 KVHTNPVVDS----------------LQG-----------------KNPILSVVSFLAKM 372
Query: 519 VGP 521
V P
Sbjct: 373 VPP 375
>sp|P43609|RSC8_YEAST Chromatin structure-remodeling complex protein RSC8
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=RSC8 PE=1 SV=1
Length = 557
Score = 125 bits (315), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 89/315 (28%), Positives = 135/315 (42%), Gaps = 33/315 (10%)
Query: 182 VLPMHSDWFSPDTVHRLERQVVPHFFSGKSPDHTPEKYMECRNHIVAKYMDNPEKRLIVS 241
++P + WF +H +E++ P FF+ S TP+ Y + RN I+ Y +P + L ++
Sbjct: 81 IIPSFASWFDISKIHEIEKRSNPDFFNDSSRFKTPKAYKDTRNFIINTYRLSPYEYLTIT 140
Query: 242 DCQGLVDGVSPEDLTRIFRFLNHWGIINYCAAVQSPEPWNRGSYLREDSNGEVSVPSDAL 301
+ V + + +I FL WG+INY +P + S + G V D
Sbjct: 141 AVRRNV-AMDVASIVKIHAFLEKWGLINY-----QIDPRTKPSLIGPSFTGHFQVVLDTP 194
Query: 302 KSIDSLIKFDKPKCSLKVAD-------------------VYSSSCGGADFFDLDNTIRER 342
+ + + + K ++ D VY S+ D R+
Sbjct: 195 QGLKPFLPENVIKQEVEGGDGAEPQVKKEFPVNLTIKKNVYDSAQDFNALQDESRNSRQI 254
Query: 343 LSENHCNYCSQPIPAVYYQSQKEVDVLLCPECFHEGRFVTGHSSLDYIRVDPAREYGDID 402
C+ C V Y + + D LC CF EG F S D+IR++ G+
Sbjct: 255 HKVYICHTCGNESINVRYHNLRARDTNLCSRCFQEGHFGANFQSSDFIRLE---NNGNSV 311
Query: 403 GETWSDQETFLLLEGIEMYNDNWNEIAEHVSTKSKAQ-CILHFVRLPMEDGILENVEVPN 461
+ WSDQE LLLEGIEMY D W +IA+HV + + CI F+ LP+ED + V
Sbjct: 312 KKNWSDQEMLLLLEGIEMYEDQWEKIADHVGGHKRVEDCIEKFLSLPIEDNYIREV---- 367
Query: 462 TSRTSNSSSRDDRGG 476
T N D R G
Sbjct: 368 VGSTLNGKGGDSRDG 382
>sp|Q84JG2|SWI3B_ARATH SWI/SNF complex subunit SWI3B OS=Arabidopsis thaliana GN=SWI3B PE=1
SV=1
Length = 469
Score = 118 bits (296), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 88/348 (25%), Positives = 155/348 (44%), Gaps = 65/348 (18%)
Query: 180 VHVLPMHSDWFSPDTVHRLERQVVPHFFSGKSPDHTPEKYMECRNHIVAKYMDNPEKRLI 239
+HV P +S WFS ++ E + +P FF +S P+ Y+ RN I+ +Y D+ +++
Sbjct: 48 IHV-PSYSSWFSWTDINDCEVRSLPEFFDSRSSSKNPKFYLYLRNSIIKQYRDDHPRKIS 106
Query: 240 VSDCQ-GLVDGVSPEDLTRIFRFLNHWGIINYCAAVQSPEPWNRGSYLREDSNGEVSVPS 298
+D + LV V + R+F FL+ WG+INY ++ S +P
Sbjct: 107 FTDVRRTLVSDVVS--IRRVFDFLDSWGLINYNSSA-SAKP------------------- 144
Query: 299 DALKSIDSLIKFDKPKCSLKVADVYSSSCGGADFFDLDNTIRERLSENHCNYCSQPIPAV 358
+K+++ + D S T++E N CN C + I ++
Sbjct: 145 ---------LKWEEKEAGKSAGDAASEPA---------TTVKETAKRN-CNGC-KAICSI 184
Query: 359 YYQSQKEVDVLLCPECFHEGRFVTGHSSLDYIRVDPAREYGDIDGETWSDQETFLLLEGI 418
+ + D+ LC C+ + G +S ++ RV+ + E WSD+E LLLE +
Sbjct: 185 ACFACDKYDLTLCARCYVRSNYRVGINSSEFKRVEISEE----SKPEWSDKEILLLLEAV 240
Query: 419 EMYNDNWNEIAEHVSTKSKAQCILHFVRLPMEDGILENVEVPNTSRTSNSSSRDDRGGLH 478
Y D+W ++A HV +++ C+ FV+LP + ++ S S D
Sbjct: 241 MHYGDDWKKVASHVIGRTEKDCVSQFVKLPFGEQFVK-----------ESDSEDGLEMFD 289
Query: 479 STVNGDLP---GAGLQEADMENRL---PFSNSGNPVMALVAFLASAVG 520
+ D+P G + R+ P +++ NP+MA AFL++ G
Sbjct: 290 QIKDSDIPESEGIDKDGSSPNKRIKLTPLADASNPIMAQAAFLSALAG 337
>sp|Q8W475|SWI3A_ARATH SWI/SNF complex subunit SWI3A OS=Arabidopsis thaliana GN=SWI3A PE=1
SV=1
Length = 512
Score = 97.8 bits (242), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 91/371 (24%), Positives = 167/371 (45%), Gaps = 55/371 (14%)
Query: 180 VHVLPMHSDWFSPDTVHRLERQVVPHFFSGKSPDHTPEKYMECRNHIVAKYMDNPEKRLI 239
++ +P S WF D +H +ER+ FF+ S TP+ Y E R+ I+ K+ ++ +RL
Sbjct: 12 LYTIPAQSSWFLWDDIHEIERREFAEFFTESSITRTPKVYKEYRDFIINKFREDTCRRLT 71
Query: 240 VSDCQGLVDGVSPEDLTRIFRFLNHWGIINYCAAVQSPEPWNRGSYLREDSNGE------ 293
+ + + G L ++F FL WG+IN+ ++++ + +L N +
Sbjct: 72 FTSVRKFLVG-DVNLLQKVFLFLEKWGLINFSSSLK------KNDHLLSVDNAKIEQGTP 124
Query: 294 ----VSVPSDALKSIDS--LIKFDKPKCSLKVADVYSSSCGGADFFDLDNTIRERLSENH 347
V+ ++L+ I + L++ ++ + +KV + S S +D D+ +
Sbjct: 125 AGIRVTATPNSLRPITAPPLVE-ERVETGIKVPPLTSYSDVFSDLKKPDHVL-------V 176
Query: 348 CNYCSQPIPAVYYQSQKEVDVLLCPECFHEGRFVTGHSSLDYIRVDPAREYGDIDGETWS 407
C +C + + +YQ K + V +C +CF G + +++ D+ + G+ W+
Sbjct: 177 CAHCGERCDSPFYQHNKGI-VNICEKCFKNGNYGENNTADDF------KLIGNSAAAVWT 229
Query: 408 DQETFLLLEGIEMYNDNWNEIAEHVSTKSKAQCILHFVRLPMEDGIL------------- 454
++E LLLE + + D+W I++ VSTKS+ CI + LP + ++
Sbjct: 230 EEEILLLLESVLKHGDDWELISQSVSTKSRLDCISKLIELPFGEFLMGSASGRLNPSILT 289
Query: 455 --ENVEVPNTSRTSNSSSRDDRGGLHSTVNGDLPGAGLQEADMENRLPFSNSGNPVMALV 512
EN E T + R VN D P A + + S + +M V
Sbjct: 290 EDENTEQVQTD-GQEHEETETREEKEDRVNEDEPPAKRKRVAL-----ISEGDSSLMKQV 343
Query: 513 AFLASAVGPRV 523
A +AS VGP V
Sbjct: 344 AAMASKVGPSV 354
>sp|Q54J55|MYBX_DICDI Myb-like protein X OS=Dictyostelium discoideum GN=mybX PE=3 SV=1
Length = 1620
Score = 93.2 bits (230), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 70/239 (29%), Positives = 105/239 (43%), Gaps = 58/239 (24%)
Query: 305 DSLIKFDKP--KCSLKVADVYSSSCGGADFFDLDNTIRERLSENHCNYCSQPIPAVYYQS 362
D LIK KP +C AD C +R +L N +P +Y
Sbjct: 851 DQLIKKKKPLFECKKCKAD-----CSN---------VRYQLVNNSTALDGNILPEYFYP- 895
Query: 363 QKEVDVLLCPECFHEGRF--VTGHSSLDYIRVDPAREYGDIDGETWSDQETFLLLEGIEM 420
+++C CF G + SS I E+G W+D ET LLLEGIE+
Sbjct: 896 -----MIICVNCFSSGNYENFIQSSSFQRIEQHQPEEFG------WTDIETLLLLEGIEI 944
Query: 421 YNDNWNEIAEHV-STKSKAQCILHFVRLPMEDGILENVEVPNTSRTSNSSSRDDRGGLHS 479
+ DNW EI++++ +K+ QC+ HF+RLP+ED LE R +S
Sbjct: 945 FRDNWQEISDYIGGSKTPEQCLTHFIRLPIEDEFLE--------RKISS----------- 985
Query: 480 TVNGDLPGAGLQEADMENRLPFSNS---GNPVMALVAFLASAVGPRVAAACAHASLAAL 535
P L + ++++ PFS + NP+M+LVAF +S P + + A+ L
Sbjct: 986 -----FPVGSLSKKEIDSNNPFSITYGVNNPIMSLVAFFSSYSQPPLGLLASKAAKVIL 1039
>sp|Q6PDG5|SMRC2_MOUSE SWI/SNF complex subunit SMARCC2 OS=Mus musculus GN=Smarcc2 PE=1
SV=2
Length = 1213
Score = 89.7 bits (221), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 49/121 (40%), Positives = 66/121 (54%), Gaps = 30/121 (24%)
Query: 420 MYNDNWNEIAEHVSTKSKAQCILHFVRLPMEDGILENVEVPNTSRTSNSSSRDDRGGLHS 479
MY D+WN+++EHV ++++ +CILHF+RLP+ED LE+ E G L
Sbjct: 615 MYKDDWNKVSEHVGSRTQDECILHFLRLPIEDPYLEDSEA-------------SLGPL-- 659
Query: 480 TVNGDLPGAGLQEADMENRLPFSNSGNPVMALVAFLASAVGPRVAAACAHASLAALSKQM 539
+PFS SGNPVM+ VAFLAS V PRVA+A A ++L SK
Sbjct: 660 ---------------AYQPIPFSQSGNPVMSTVAFLASVVDPRVASAAAKSALEEFSKMK 704
Query: 540 E 540
E
Sbjct: 705 E 705
Score = 74.3 bits (181), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 57/98 (58%), Gaps = 7/98 (7%)
Query: 182 VLPMHSDWFSPDTVHRLERQVVPHFFSGKSPDHTPEKYMECRNHIVAKYMDNPEKRLIVS 241
++P ++ WF ++VH +ER+ +P FF+GK+ TPE Y+ RN ++ Y NP++ L +
Sbjct: 425 IIPSYAAWFDYNSVHAIERRALPEFFNGKNKSKTPEIYLAYRNFMIDTYRLNPQEYLTST 484
Query: 242 DCQGLVDGVSPEDLTRIFR---FLNHWGIINYCAAVQS 276
C+ + G D+ I R FL WG+INY +S
Sbjct: 485 ACRRNLAG----DVCAIMRVHAFLEQWGLINYQVDAES 518
>sp|Q8TAQ2|SMRC2_HUMAN SWI/SNF complex subunit SMARCC2 OS=Homo sapiens GN=SMARCC2 PE=1
SV=1
Length = 1214
Score = 89.4 bits (220), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 49/121 (40%), Positives = 66/121 (54%), Gaps = 30/121 (24%)
Query: 420 MYNDNWNEIAEHVSTKSKAQCILHFVRLPMEDGILENVEVPNTSRTSNSSSRDDRGGLHS 479
MY D+WN+++EHV ++++ +CILHF+RLP+ED LE+ E G L
Sbjct: 615 MYKDDWNKVSEHVGSRTQDECILHFLRLPIEDPYLEDSEA-------------SLGPL-- 659
Query: 480 TVNGDLPGAGLQEADMENRLPFSNSGNPVMALVAFLASAVGPRVAAACAHASLAALSKQM 539
+PFS SGNPVM+ VAFLAS V PRVA+A A ++L SK
Sbjct: 660 ---------------AYQPIPFSQSGNPVMSTVAFLASVVDPRVASAAAKSALEEFSKMK 704
Query: 540 E 540
E
Sbjct: 705 E 705
Score = 74.7 bits (182), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 57/98 (58%), Gaps = 7/98 (7%)
Query: 182 VLPMHSDWFSPDTVHRLERQVVPHFFSGKSPDHTPEKYMECRNHIVAKYMDNPEKRLIVS 241
++P ++ WF ++VH +ER+ +P FF+GK+ TPE Y+ RN ++ Y NP++ L +
Sbjct: 425 IIPSYAAWFDYNSVHAIERRALPEFFNGKNKSKTPEIYLAYRNFMIDTYRLNPQEYLTST 484
Query: 242 DCQGLVDGVSPEDLTRIFR---FLNHWGIINYCAAVQS 276
C+ + G D+ I R FL WG+INY +S
Sbjct: 485 ACRRNLAG----DVCAIMRVHAFLEQWGLINYQVDAES 518
>sp|P97496|SMRC1_MOUSE SWI/SNF complex subunit SMARCC1 OS=Mus musculus GN=Smarcc1 PE=1
SV=2
Length = 1104
Score = 82.4 bits (202), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 62/152 (40%), Positives = 84/152 (55%), Gaps = 30/152 (19%)
Query: 389 YIRVDPAREYGDIDGETWSDQETFLLLEGIEMYNDNWNEIAEHVSTKSKAQCILHFVRLP 448
Y + A+ G G W++QET LLLE +EMY D+WN+++EHV ++++ +CILHF+RLP
Sbjct: 605 YSKKTLAKSKGASAGREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRLP 664
Query: 449 MEDGILENVEVPNTSRTSNSSSRDDRGGLHSTVNGDLPGAGLQEADMENRLPFSNSGNPV 508
+ED LEN + L Q +PFS SGNPV
Sbjct: 665 IEDPYLEN------------------------SDASLGPLAYQP------VPFSQSGNPV 694
Query: 509 MALVAFLASAVGPRVAAACAHASLAALSKQME 540
M+ VAFLAS V PRVA+A A A+L S+ E
Sbjct: 695 MSTVAFLASVVDPRVASAAAKAALEEFSRVRE 726
Score = 71.2 bits (173), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 66/123 (53%), Gaps = 13/123 (10%)
Query: 151 DPERSDTSCVITPPQIMEGKGVVKRFGSRVHVLPMHSDWFSPDTVHRLERQVVPHFFSGK 210
DP + D S + P G+ V + + ++P ++ WF + +H +ER+ +P FF+GK
Sbjct: 424 DPSKGDPSRSVDP-----GEDNVTEQTNHI-IIPSYASWFDYNCIHVIERRALPEFFNGK 477
Query: 211 SPDHTPEKYMECRNHIVAKYMDNPEKRLIVSDCQGLVDGVSPEDLTRIFR---FLNHWGI 267
+ TPE Y+ RN ++ Y NP++ L + C+ + G D+ + R FL WG+
Sbjct: 478 NKSKTPEIYLAYRNFMIDTYRLNPQEYLTSTACRRNLTG----DVCAVMRVHAFLEQWGL 533
Query: 268 INY 270
+NY
Sbjct: 534 VNY 536
>sp|Q92922|SMRC1_HUMAN SWI/SNF complex subunit SMARCC1 OS=Homo sapiens GN=SMARCC1 PE=1
SV=3
Length = 1105
Score = 82.4 bits (202), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 62/152 (40%), Positives = 84/152 (55%), Gaps = 30/152 (19%)
Query: 389 YIRVDPAREYGDIDGETWSDQETFLLLEGIEMYNDNWNEIAEHVSTKSKAQCILHFVRLP 448
Y + A+ G G W++QET LLLE +EMY D+WN+++EHV ++++ +CILHF+RLP
Sbjct: 606 YSKKTLAKSKGASAGREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRLP 665
Query: 449 MEDGILENVEVPNTSRTSNSSSRDDRGGLHSTVNGDLPGAGLQEADMENRLPFSNSGNPV 508
+ED LEN + L Q +PFS SGNPV
Sbjct: 666 IEDPYLEN------------------------SDASLGPLAYQP------VPFSQSGNPV 695
Query: 509 MALVAFLASAVGPRVAAACAHASLAALSKQME 540
M+ VAFLAS V PRVA+A A A+L S+ E
Sbjct: 696 MSTVAFLASVVDPRVASAAAKAALEEFSRVRE 727
Score = 70.9 bits (172), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 54/92 (58%), Gaps = 7/92 (7%)
Query: 182 VLPMHSDWFSPDTVHRLERQVVPHFFSGKSPDHTPEKYMECRNHIVAKYMDNPEKRLIVS 241
++P ++ WF + +H +ER+ +P FF+GK+ TPE Y+ RN ++ Y NP++ L +
Sbjct: 450 IIPSYASWFDYNCIHVIERRALPEFFNGKNKSKTPEIYLAYRNFMIDTYRLNPQEYLTST 509
Query: 242 DCQGLVDGVSPEDLTRIFR---FLNHWGIINY 270
C+ + G D+ + R FL WG++NY
Sbjct: 510 ACRRNLTG----DVCAVMRVHAFLEQWGLVNY 537
>sp|Q75LL6|TADA2_ORYSJ Transcriptional adapter ADA2 OS=Oryza sativa subsp. japonica
GN=ADA2 PE=2 SV=2
Length = 567
Score = 78.6 bits (192), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 48/105 (45%), Positives = 58/105 (55%), Gaps = 3/105 (2%)
Query: 347 HCNYCSQPIPA-VYYQSQKEVDVLLCPECFHEGRFVTGHSSLDYIRVDPAREYGDIDGET 405
HCNYC++ I + + K D LC ECF G VT H S RV + I +
Sbjct: 52 HCNYCNKDISGKIRIKCSKCPDFDLCVECFSVGAEVTPHRSNHPYRVMDNLSFPLICPD- 110
Query: 406 WSDQETFLLLEGIEMYN-DNWNEIAEHVSTKSKAQCILHFVRLPM 449
W+ E LLLEGIEMY NW E+AEHV TK+KAQCI H+ M
Sbjct: 111 WNADEEILLLEGIEMYGLGNWAEVAEHVGTKTKAQCIDHYTTAYM 155
>sp|P32591|SWI3_YEAST SWI/SNF complex subunit SWI3 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=SWI3 PE=1 SV=1
Length = 825
Score = 77.8 bits (190), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 35/89 (39%), Positives = 52/89 (58%), Gaps = 1/89 (1%)
Query: 182 VLPMHSDWFSPDTVHRLERQVVPHFFSGKSPDHTPEKYMECRNHIVAKYMDNPEKRLIVS 241
V+P +S WF+ + +H +E Q +P FF+ + P TPE YM RN +V Y NP + V+
Sbjct: 306 VIPSYSKWFNLEKIHSIEVQSLPEFFTNRIPSKTPEVYMRYRNFMVNSYRLNPNEYFSVT 365
Query: 242 DCQGLVDGVSPEDLTRIFRFLNHWGIINY 270
+ V G + L R+ +FL WG+INY
Sbjct: 366 TARRNVSGDAAA-LFRLHKFLTKWGLINY 393
Score = 69.3 bits (168), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 41/131 (31%), Positives = 64/131 (48%), Gaps = 22/131 (16%)
Query: 404 ETWSDQETFLLLEGIEMYNDNWNEIAEHVSTKSKAQCILHFVRLPMEDGILENVEVPNTS 463
E WS ++ LL+GI+ + +W ++A++V KS QCIL F++LP+ED L
Sbjct: 525 ENWSKEDLQKLLKGIQEFGADWYKVAKNVGNKSPEQCILRFLQLPIEDKFL--------- 575
Query: 464 RTSNSSSRDDRGGLHSTVNGDLPGAGLQEADMENRLPFSNSGNPVMALVAFLASAVGPRV 523
+ D+ GL G L A LPFS S NPV++ +AFL V P+
Sbjct: 576 YGDGNGKGDNDNGL-----GPLKYAP--------HLPFSKSENPVLSTIAFLVGLVNPKT 622
Query: 524 AAACAHASLAA 534
+ ++ +
Sbjct: 623 VQSMTQRAIQS 633
>sp|Q9ATB4|TAD2B_ARATH Transcriptional adapter ADA2b OS=Arabidopsis thaliana GN=ADA2B PE=1
SV=1
Length = 487
Score = 61.6 bits (148), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/162 (30%), Positives = 74/162 (45%), Gaps = 19/162 (11%)
Query: 347 HCNYCSQPIPA-VYYQSQKEVDVLLCPECFHEGRFVTGHSSLDYIRVDPAREYGDIDGET 405
+C+YC + I + + D LC EC G +T H D+ P R G++
Sbjct: 46 NCDYCQKDITGKIRIKCAVCPDFDLCIECMSVGAEITPHKC-DH----PYRVMGNLTFPL 100
Query: 406 ----WSDQETFLLLEGIEMYN-DNWNEIAEHVSTKSKAQCILHFVRLPMEDGILENVEVP 460
WS + LLLEG+E+Y NW E+AEHV TKSK QC+ H+ + + +P
Sbjct: 101 ICPDWSADDEMLLLEGLEIYGLGNWAEVAEHVGTKSKEQCLEHYRNIYLNSPFF---PLP 157
Query: 461 NTSRTSNSSSRDDRGGLHSTVNGDLPGAGLQEADMENRLPFS 502
+ S + +R L + G + E +M+ PFS
Sbjct: 158 DMSHVAGK----NRKELQAMAKGRIDDKK-AEQNMKEEYPFS 194
>sp|Q9SFD5|TAD2A_ARATH Transcriptional adapter ADA2a OS=Arabidopsis thaliana GN=ADA2A PE=1
SV=1
Length = 548
Score = 59.7 bits (143), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 50/99 (50%), Gaps = 3/99 (3%)
Query: 348 CNYCSQPIPA-VYYQSQKEVDVLLCPECFHEGRFVTGHSSLDYIRVDPAREYGDIDGETW 406
CNYC + + V ++ +D LC ECF G + H + RV + + + W
Sbjct: 53 CNYCDKDLSGLVRFKCAVCMDFDLCVECFSVGVELNRHKNSHPYRVMDNLSFSLVTSD-W 111
Query: 407 SDQETFLLLEGIEMYN-DNWNEIAEHVSTKSKAQCILHF 444
+ E LLLE I Y NW E+A+HV +K+ +CI HF
Sbjct: 112 NADEEILLLEAIATYGFGNWKEVADHVGSKTTTECIKHF 150
>sp|Q5RBN9|TAD2B_PONAB Transcriptional adapter 2-beta OS=Pongo abelii GN=TADA2B PE=2 SV=1
Length = 420
Score = 53.5 bits (127), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 60/125 (48%), Gaps = 6/125 (4%)
Query: 343 LSENHCNYCSQPIPAVYYQSQKEVDVLLCPECFHEGRFVTGHSSL-DYIRVDPAR--EYG 399
L + +C YC + + ++ + D+ LCPECF G + H Y VD R +G
Sbjct: 4 LGKKYCVYCLAEVSPLRFRCTECQDIELCPECFSAGAEIGHHRRYHGYQLVDGGRFTLWG 63
Query: 400 DIDGETWSDQETFLLLEGIEMYN-DNWNEIAEHVSTKSKAQCIL-HFVRLPMEDGILENV 457
W+ +E LLL+ IE + NW ++A HV Q ++ H+V + + G L
Sbjct: 64 PEAEGGWTSREEQLLLDAIEQFGFGNWEDMAAHVGASRTPQEVMEHYVSMYIH-GNLGKA 122
Query: 458 EVPNT 462
+P+T
Sbjct: 123 CIPDT 127
>sp|Q86TJ2|TAD2B_HUMAN Transcriptional adapter 2-beta OS=Homo sapiens GN=TADA2B PE=1 SV=2
Length = 420
Score = 53.5 bits (127), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 60/125 (48%), Gaps = 6/125 (4%)
Query: 343 LSENHCNYCSQPIPAVYYQSQKEVDVLLCPECFHEGRFVTGHSSL-DYIRVDPAR--EYG 399
L + +C YC + + ++ + D+ LCPECF G + H Y VD R +G
Sbjct: 4 LGKKYCVYCLAEVSPLRFRCTECQDIELCPECFSAGAEIGHHRRYHGYQLVDGGRFTLWG 63
Query: 400 DIDGETWSDQETFLLLEGIEMYN-DNWNEIAEHVSTKSKAQCIL-HFVRLPMEDGILENV 457
W+ +E LLL+ IE + NW ++A HV Q ++ H+V + + G L
Sbjct: 64 PEAEGGWTSREEQLLLDAIEQFGFGNWEDMAAHVGASRTPQEVMEHYVSMYIH-GNLGKA 122
Query: 458 EVPNT 462
+P+T
Sbjct: 123 CIPDT 127
>sp|Q9P7J7|ADA2_SCHPO Transcriptional adapter 2 OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=ada2 PE=1 SV=1
Length = 437
Score = 50.1 bits (118), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 59/119 (49%), Gaps = 6/119 (5%)
Query: 347 HCNYCSQPIP-AVYYQSQKEVDVLLCPECFHEGRFVTGHSSLDYIRVDPAREYGDIDGET 405
HCN C+Q I +++ + + VD LC CF G + H R+ Y D E
Sbjct: 7 HCNVCAQDITRSIHIRCVECVDFDLCIPCFTSGASLGTHHPSHPYRIIETNSYPIFD-EN 65
Query: 406 WSDQETFLLLEGIEMYN-DNWNEIAEHV-STKSKAQCILHFVRLPMEDGI--LENVEVP 460
W E LL++ E NW +IA++V + ++K +C H+++ +E L +VE+P
Sbjct: 66 WGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTYIESDCYPLASVELP 124
>sp|Q6NRB5|TAD2B_XENLA Transcriptional adapter 2-beta OS=Xenopus laevis GN=tada2b PE=2
SV=1
Length = 420
Score = 49.3 bits (116), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 75/161 (46%), Gaps = 7/161 (4%)
Query: 343 LSENHCNYCSQPIPAVYYQSQKEVDVLLCPECFHEGRFVTGHSSL-DYIRVDPAR--EYG 399
LS+ +C YC + ++ + + D+ LC +CF G + H Y VD R +G
Sbjct: 4 LSKKYCVYCLADVTSLRLRCTECQDIELCTDCFSAGAEIGNHRRWHGYQLVDGGRFTLWG 63
Query: 400 DIDGETWSDQETFLLLEGIEMYN-DNWNEIAEHV-STKSKAQCILHFVRLPMEDGILENV 457
W+ +E LLL+ IE + NW ++A HV ++++ + + H+V + + G L
Sbjct: 64 PEAEGGWTSREEQLLLDAIEQFGFGNWEDMAAHVGASRTPTEVMEHYVTMYIH-GNLGKA 122
Query: 458 EVPNTSRTSNSSSRDDRGG-LHSTVNGDLPGAGLQEADMEN 497
+P++ + GG L ++ LP L AD +
Sbjct: 123 CIPDSIPNRVTDHTCPTGGPLSPSLTTPLPTLDLTVADQQQ 163
>sp|Q503N9|TAD2B_DANRE Transcriptional adapter 2-beta OS=Danio rerio GN=tada2b PE=2 SV=1
Length = 486
Score = 47.4 bits (111), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 51/110 (46%), Gaps = 5/110 (4%)
Query: 343 LSENHCNYCSQPIPAVYYQSQKEVDVLLCPECFHEGRFVTGHSSL-DYIRVDPAR--EYG 399
L + +C C + + + + D+ LCPECF G + H Y +VD R +G
Sbjct: 4 LGKKYCVNCLADVTNLRIRCAECQDIELCPECFSAGAEIGNHRRWHGYQQVDGGRFSLWG 63
Query: 400 DIDGETWSDQETFLLLEGIEMYN-DNWNEIAEHVSTKSKAQCIL-HFVRL 447
W+ +E LL+ IE Y NW ++A HV Q ++ H+V +
Sbjct: 64 PEAEGGWTSREEQSLLDAIEQYGFGNWEDMAAHVGASRTPQEVMDHYVSM 113
>sp|Q6AYE3|TAD2A_RAT Transcriptional adapter 2-alpha OS=Rattus norvegicus GN=Tada2a PE=2
SV=1
Length = 443
Score = 46.6 bits (109), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 65/139 (46%), Gaps = 13/139 (9%)
Query: 368 VLLCPECFHEGRFVTGHSSLDYIRVDPAREYGDIDGETWSDQETFLLLEGI-EMYNDNWN 426
LC +CF G H S D+ ++ +D +W+ QE LLE + + NW
Sbjct: 39 FFLCLQCFTRGFEYKKHQS-DHTYEIMTSDFPVLDP-SWTAQEEMALLEAVMDCGFGNWQ 96
Query: 427 EIAEHVSTKSKAQC----ILHFVRLPMEDGILENVEVPNTSRTSNSS----SRDD--RGG 476
++A + TK+K +C + HF+ P+ L N++ ++T++++ S DD R
Sbjct: 97 DVANQMCTKTKEECEKHYMKHFINNPLFASTLLNLKQAEAAKTADTAIPFHSADDPPRPA 156
Query: 477 LHSTVNGDLPGAGLQEADM 495
S ++ D+ G AD
Sbjct: 157 FDSLLSRDMAGYMPARADF 175
>sp|O75478|TAD2A_HUMAN Transcriptional adapter 2-alpha OS=Homo sapiens GN=TADA2A PE=1 SV=3
Length = 443
Score = 45.4 bits (106), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 65/139 (46%), Gaps = 13/139 (9%)
Query: 368 VLLCPECFHEGRFVTGHSSLDYIRVDPAREYGDIDGETWSDQETFLLLEGI-EMYNDNWN 426
LC +CF G H S D+ ++ +D +W+ QE LLE + + NW
Sbjct: 39 FFLCLQCFTRGFEYKKHQS-DHTYEIMTSDFPVLDP-SWTAQEEMALLEAVMDCGFGNWQ 96
Query: 427 EIAEHVSTKSKAQC----ILHFVRLPMEDGILENVEVPNTSRTSNSS----SRDD--RGG 476
++A + TK+K +C + HF+ P+ L N++ ++T++++ S DD R
Sbjct: 97 DVANQMCTKTKEECEKHYMKHFINNPLFASTLLNLKQAEEAKTADTAIPFHSTDDPPRPT 156
Query: 477 LHSTVNGDLPGAGLQEADM 495
S ++ D+ G AD
Sbjct: 157 FDSLLSRDMAGYMPARADF 175
>sp|Q3SZP8|TAD2A_BOVIN Transcriptional adapter 2-alpha OS=Bos taurus GN=TADA2A PE=2 SV=1
Length = 443
Score = 45.4 bits (106), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 65/139 (46%), Gaps = 13/139 (9%)
Query: 368 VLLCPECFHEGRFVTGHSSLDYIRVDPAREYGDIDGETWSDQETFLLLEGI-EMYNDNWN 426
LC +CF G H S D+ ++ +D +W+ QE LLE + + NW
Sbjct: 39 FFLCLQCFTRGFEYKKHQS-DHTYEIMTSDFPVLDP-SWTAQEEMALLEAVMDCGFGNWQ 96
Query: 427 EIAEHVSTKSKAQC----ILHFVRLPMEDGILENVEVPNTSRTSNSS----SRDD--RGG 476
++A + TK+K +C + HF+ P+ L N++ ++T++++ S DD R
Sbjct: 97 DVANQMCTKTKEECEKHYMKHFINNPLFASTLLNLKQAEEAKTADTAIPFHSADDPPRPT 156
Query: 477 LHSTVNGDLPGAGLQEADM 495
S ++ D+ G AD
Sbjct: 157 FDSLLSRDMAGYMPARADF 175
>sp|Q8I8V0|TAD2B_DROME Transcriptional adapter 2B OS=Drosophila melanogaster GN=Ada2b PE=1
SV=1
Length = 555
Score = 44.3 bits (103), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 44/184 (23%), Positives = 71/184 (38%), Gaps = 13/184 (7%)
Query: 338 TIRERLSENHCNYCSQPIPAVYYQSQKEVDVLLCPECFHEGRFVTGH-SSLDYIRVDPAR 396
TI + ++ +C C I + + + LC +CF G + H ++ Y +D
Sbjct: 3 TIADLFTKYNCTNCQDDIQGIRVHCAECENFDLCLQCFAAGAEIGAHQNNHSYQFMDTGT 62
Query: 397 EYGDI--DGETWSDQETFLLLEGIEMYN-DNWNEIAEHVSTKSKAQCILHFVRLPMEDGI 453
+ W+ +E LL+ IE Y NW +I++H+ TKS +V + I
Sbjct: 63 SILSVFRGKGAWTAREEIRLLDAIEQYGFGNWEDISKHIETKSAEDAKEEYVNKFVNGTI 122
Query: 454 LENVEVPNTS---RTSNSSSRDDRGGLHSTVNGDLP------GAGLQEADMENRLPFSNS 504
P S R + + DD G L + LP +Q M NR F
Sbjct: 123 GRATWTPAQSQRPRLIDHTGDDDAGPLGTNALSTLPPLEINSDEAMQLGYMPNRDSFERE 182
Query: 505 GNPV 508
+P
Sbjct: 183 YDPT 186
>sp|Q02336|ADA2_YEAST Transcriptional adapter 2 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=ADA2 PE=1 SV=1
Length = 434
Score = 42.7 bits (99), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 53/128 (41%), Gaps = 19/128 (14%)
Query: 347 HCNYCSQPIPAVYYQSQKEVDVLLCPE------CFHEGRFVTGHSSLDYIRVDPAREYGD 400
HC+ CS ++ V +CPE CF +G + H R+ Y
Sbjct: 6 HCDVCSADC-----TNRVRVSCAICPEYDLCVPCFSQGSYTGKHRPYHDYRIIETNSYP- 59
Query: 401 IDGETWSDQETFLLLEGIEMYN-DNWNEIAEHVSTKSKAQCILHFVRLPMEDG------I 453
I W E L++G + NW +IA+H+ ++ K + H+++ +E I
Sbjct: 60 ILCPDWGADEELQLIKGAQTLGLGNWQDIADHIGSRGKEEVKEHYLKYYLESKYYPIPDI 119
Query: 454 LENVEVPN 461
+N+ VP
Sbjct: 120 TQNIHVPQ 127
>sp|Q5RGA4|MYSM1_DANRE Histone H2A deubiquitinase MYSM1 OS=Danio rerio GN=mysm1 PE=2 SV=2
Length = 822
Score = 42.4 bits (98), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 43/79 (54%), Gaps = 2/79 (2%)
Query: 193 DTVHRLERQVVPHFFSGKSPDHTPEKYMECRNHIVAKYMDNPEKRLIVSDCQ-GLVDGVS 251
+T+ E+Q + FF G+ P TPE+Y++ RN+I+ ++ + K L + + GL +
Sbjct: 325 NTITEEEKQAISEFFEGR-PSKTPERYLKIRNYILDQWRRSKPKYLNKTSVRPGLKNCGD 383
Query: 252 PEDLTRIFRFLNHWGIINY 270
+ RI +L G IN+
Sbjct: 384 VNCIGRIHTYLELIGAINF 402
>sp|Q69Z66|MYSM1_MOUSE Histone H2A deubiquitinase MYSM1 OS=Mus musculus GN=Mysm1 PE=2 SV=2
Length = 819
Score = 42.0 bits (97), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 50/100 (50%), Gaps = 17/100 (17%)
Query: 193 DTVHRLERQVVPHFFSGKSPDHTPEKYMECRNHIV-------AKYMDNPEKRLIVSDCQG 245
+ + E+Q +P FF G+ TPE+Y++ RN+I+ KY++ R + +C G
Sbjct: 375 NVIQEEEKQAIPEFFEGRQ-TKTPERYLKIRNYILDQWEICKPKYLNKTSVRPGLKNC-G 432
Query: 246 LVDGVSPEDLTRIFRFLNHWGIINY-C--AAVQSPEPWNR 282
V+ + RI +L G IN+ C A P+P ++
Sbjct: 433 DVNCIG-----RIHTYLELIGAINFGCEQAVYNRPQPLDK 467
>sp|Q5ZJF3|TAD2A_CHICK Transcriptional adapter 2-alpha OS=Gallus gallus GN=TADA2A PE=2
SV=1
Length = 446
Score = 42.0 bits (97), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 46/96 (47%), Gaps = 7/96 (7%)
Query: 368 VLLCPECFHEGRFVTGHSSLDYIRVDPAREYGDIDGETWSDQETFLLLEGI-EMYNDNWN 426
LLC +CF G H S D+ ++ +D W+ QE LLE + + NW
Sbjct: 39 FLLCLQCFTRGFEYKKHQS-DHTYEIMTSDFPVLDP-NWTAQEEMALLEAVMDCGFGNWQ 96
Query: 427 EIAEHVSTKSKAQC----ILHFVRLPMEDGILENVE 458
++A + TKSK +C + HF+ P+ L N++
Sbjct: 97 DVANQMCTKSKEECEKHYMKHFINNPLFASTLLNLK 132
>sp|Q5F3F2|MYSM1_CHICK Histone H2A deubiquitinase MYSM1 OS=Gallus gallus GN=MYSM1 PE=2
SV=1
Length = 832
Score = 41.2 bits (95), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 48/94 (51%), Gaps = 17/94 (18%)
Query: 199 ERQVVPHFFSGKSPDHTPEKYMECRNHIV-------AKYMDNPEKRLIVSDCQGLVDGVS 251
E+Q +P FF G+ TPE+Y++ RN+I+ KY++ R + +C G V+ +
Sbjct: 392 EKQAIPEFFEGRQA-KTPERYLKIRNYILDQWERCKPKYLNKTSVRPGLKNC-GDVNCIG 449
Query: 252 PEDLTRIFRFLNHWGIINY-C--AAVQSPEPWNR 282
RI +L G IN+ C A P+P ++
Sbjct: 450 -----RIHTYLELIGAINFGCEQAVYNRPQPADK 478
>sp|Q5VVJ2|MYSM1_HUMAN Histone H2A deubiquitinase MYSM1 OS=Homo sapiens GN=MYSM1 PE=1 SV=1
Length = 828
Score = 40.4 bits (93), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 43/85 (50%), Gaps = 14/85 (16%)
Query: 193 DTVHRLERQVVPHFFSGKSPDHTPEKYMECRNHIV-------AKYMDNPEKRLIVSDCQG 245
+ + E+Q +P FF G+ TPE+Y++ RN+I+ KY++ R + +C G
Sbjct: 384 NIIQEEEKQAIPEFFEGRQA-KTPERYLKIRNYILDQWEICKPKYLNKTSVRPGLKNC-G 441
Query: 246 LVDGVSPEDLTRIFRFLNHWGIINY 270
V+ + RI +L G IN+
Sbjct: 442 DVNCIG-----RIHTYLELIGAINF 461
>sp|Q8CHV6|TAD2A_MOUSE Transcriptional adapter 2-alpha OS=Mus musculus GN=Tada2a PE=1 SV=1
Length = 443
Score = 39.7 bits (91), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 46/96 (47%), Gaps = 7/96 (7%)
Query: 368 VLLCPECFHEGRFVTGHSSLDYIRVDPAREYGDIDGETWSDQETFLLLEGI-EMYNDNWN 426
LC +CF G H S D+ ++ +D +W+ QE LLE + + NW
Sbjct: 39 FFLCLQCFTRGFEYKKHQS-DHTYEIMTSDFPVLDP-SWTAQEEMALLEAVMDCGFGNWQ 96
Query: 427 EIAEHVSTKSKAQC----ILHFVRLPMEDGILENVE 458
++A + TK+K +C + HF+ P+ L N++
Sbjct: 97 DVANQMCTKTKEECEKHYMKHFINNPLFASTLLNLK 132
>sp|P92973|CCA1_ARATH Protein CCA1 OS=Arabidopsis thaliana GN=CCA1 PE=1 SV=1
Length = 608
Score = 37.7 bits (86), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 24/44 (54%)
Query: 404 ETWSDQETFLLLEGIEMYNDNWNEIAEHVSTKSKAQCILHFVRL 447
E W+++E +E + +Y W +I EHV+TK+ Q H +
Sbjct: 25 ERWTEEEHNRFIEALRLYGRAWQKIEEHVATKTAVQIRSHAQKF 68
>sp|B0SW62|RUTD_CAUSK Putative aminoacrylate hydrolase RutD OS=Caulobacter sp. (strain
K31) GN=rutD PE=3 SV=1
Length = 268
Score = 34.7 bits (78), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 52/114 (45%), Gaps = 11/114 (9%)
Query: 103 VSVMDIVAIEAAYLAGDASGRSSAVALENISFGQLQALSVVPADSAALDPERSDTSCVIT 162
V +MD + +E A++ G A+G ++ +AL +L L VV S P+ C T
Sbjct: 79 VKLMDALGLERAHVVGHAAGGNAGLALALNHPDRLDKLVVVNGWS---RPDPHIKRCFDT 135
Query: 163 PPQIMEGKGVVKRFGSRVHVLPMH---SDWFSPDTVHRLERQVVPHFFSGKSPD 213
++ G+ + VH P+ +DW S + RLE + V H SPD
Sbjct: 136 RLALLNDTGI----AAYVHAQPLFLYPADWLSANNA-RLEAEEVHHINGFPSPD 184
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.132 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 224,603,003
Number of Sequences: 539616
Number of extensions: 10220282
Number of successful extensions: 93122
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 359
Number of HSP's successfully gapped in prelim test: 203
Number of HSP's that attempted gapping in prelim test: 72558
Number of HSP's gapped (non-prelim): 15999
length of query: 550
length of database: 191,569,459
effective HSP length: 123
effective length of query: 427
effective length of database: 125,196,691
effective search space: 53458987057
effective search space used: 53458987057
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 64 (29.3 bits)