Query 008870
Match_columns 550
No_of_seqs 258 out of 724
Neff 4.9
Searched_HMMs 29240
Date Mon Mar 25 13:39:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008870.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008870hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2fq3_A Transcription regulator 100.0 4.1E-41 1.4E-45 295.0 9.5 96 179-275 9-104 (104)
2 2dce_A KIAA1915 protein; swirm 100.0 2.3E-40 8E-45 293.7 9.2 96 179-276 11-108 (111)
3 2yus_A SWI/SNF-related matrix- 99.6 1.2E-15 4.2E-20 127.6 9.6 56 402-457 17-72 (79)
4 2elk_A SPCC24B10.08C protein; 99.4 5.1E-13 1.7E-17 105.2 6.9 49 402-450 8-58 (58)
5 1x41_A Transcriptional adaptor 99.3 4.3E-12 1.5E-16 100.3 7.2 51 401-451 6-57 (60)
6 1guu_A C-MYB, MYB proto-oncoge 99.1 1.7E-10 5.7E-15 88.3 5.5 45 403-447 3-48 (52)
7 1gvd_A MYB proto-oncogene prot 99.0 2.3E-10 7.8E-15 87.6 5.9 45 403-447 3-48 (52)
8 2cqr_A RSGI RUH-043, DNAJ homo 99.0 2.1E-10 7.1E-15 94.7 5.2 61 387-452 6-70 (73)
9 2d9a_A B-MYB, MYB-related prot 99.0 5.8E-10 2E-14 87.8 7.2 47 401-447 6-53 (60)
10 2yum_A ZZZ3 protein, zinc fing 99.0 3E-10 1E-14 93.2 5.2 48 401-448 6-59 (75)
11 1w0t_A Telomeric repeat bindin 99.0 5.3E-10 1.8E-14 86.1 6.0 44 404-447 3-49 (53)
12 2cu7_A KIAA1915 protein; nucle 99.0 7.6E-10 2.6E-14 90.4 6.5 47 401-447 7-53 (72)
13 2dim_A Cell division cycle 5-l 98.9 1.3E-09 4.4E-14 88.4 7.3 46 402-447 8-54 (70)
14 1wgx_A KIAA1903 protein; MYB D 98.9 1.3E-09 4.5E-14 90.0 6.7 48 402-449 7-58 (73)
15 3sjm_A Telomeric repeat-bindin 98.9 1.6E-09 5.6E-14 87.0 6.0 45 403-447 11-58 (64)
16 1ity_A TRF1; helix-turn-helix, 98.9 2.3E-09 7.8E-14 86.8 6.0 46 402-447 9-57 (69)
17 2din_A Cell division cycle 5-l 98.8 5.5E-09 1.9E-13 83.7 6.3 45 402-447 8-52 (66)
18 2eqr_A N-COR1, N-COR, nuclear 98.7 1.6E-08 5.5E-13 80.2 6.2 44 403-446 12-55 (61)
19 2llk_A Cyclin-D-binding MYB-li 98.7 2.4E-08 8.4E-13 82.4 7.0 46 401-447 21-66 (73)
20 2cjj_A Radialis; plant develop 98.7 1.2E-08 4.2E-13 87.8 5.3 45 403-447 8-56 (93)
21 2ltp_A Nuclear receptor corepr 98.1 1.9E-09 6.4E-14 91.8 0.0 47 401-447 14-60 (89)
22 2k9n_A MYB24; R2R3 domain, DNA 98.7 2.4E-08 8.4E-13 87.0 5.9 44 404-447 2-46 (107)
23 1gv2_A C-MYB, MYB proto-oncoge 98.6 2.8E-08 9.6E-13 85.9 6.1 46 402-447 3-49 (105)
24 2k9n_A MYB24; R2R3 domain, DNA 98.6 6.7E-08 2.3E-12 84.2 6.5 46 402-447 52-97 (107)
25 1h8a_C AMV V-MYB, MYB transfor 98.6 8.6E-08 2.9E-12 85.8 7.2 46 402-447 26-72 (128)
26 3osg_A MYB21; transcription-DN 98.6 5.9E-08 2E-12 87.0 6.0 46 402-447 10-55 (126)
27 2ckx_A NGTRF1, telomere bindin 98.6 7.2E-08 2.4E-12 81.4 5.8 44 404-447 1-49 (83)
28 1gv2_A C-MYB, MYB proto-oncoge 98.5 6.3E-08 2.1E-12 83.7 5.5 46 402-447 55-100 (105)
29 3osg_A MYB21; transcription-DN 98.5 7.1E-08 2.4E-12 86.4 5.4 46 402-447 61-106 (126)
30 2iw5_B Protein corest, REST co 98.5 1.1E-07 3.7E-12 93.4 6.5 46 402-447 132-177 (235)
31 3zqc_A MYB3; transcription-DNA 98.5 4.7E-08 1.6E-12 88.0 2.9 44 404-447 3-47 (131)
32 1h8a_C AMV V-MYB, MYB transfor 98.5 1.7E-07 6E-12 83.8 6.2 46 402-447 78-123 (128)
33 3zqc_A MYB3; transcription-DNA 98.4 1.8E-07 6.2E-12 84.2 5.9 46 402-447 53-98 (131)
34 2z3y_A Lysine-specific histone 98.4 1.3E-07 4.5E-12 104.8 5.3 87 186-275 8-98 (662)
35 4gut_A Lysine-specific histone 98.4 3.3E-07 1.1E-11 104.1 8.0 91 178-274 214-322 (776)
36 2yqk_A Arginine-glutamic acid 98.4 8.4E-07 2.9E-11 70.9 7.0 45 401-445 7-52 (63)
37 2cqq_A RSGI RUH-037, DNAJ homo 98.3 6E-07 2E-11 73.8 5.9 49 402-452 7-59 (72)
38 2roh_A RTBP1, telomere binding 98.3 7.9E-07 2.7E-11 80.1 6.0 46 402-447 30-80 (122)
39 1h89_C C-MYB, MYB proto-oncoge 98.3 1E-06 3.4E-11 81.6 6.7 46 402-447 57-103 (159)
40 2xag_B REST corepressor 1; ami 98.2 9.6E-07 3.3E-11 95.2 6.7 46 402-447 379-424 (482)
41 1h89_C C-MYB, MYB proto-oncoge 98.2 1.1E-06 3.7E-11 81.3 6.2 46 402-447 109-154 (159)
42 2aje_A Telomere repeat-binding 98.2 7.5E-07 2.6E-11 78.3 4.5 46 402-447 12-62 (105)
43 2juh_A Telomere binding protei 98.2 1.9E-06 6.5E-11 77.5 5.9 46 402-447 16-66 (121)
44 2e5r_A Dystrobrevin alpha; ZZ 98.1 2E-06 6.9E-11 68.9 4.8 48 346-393 12-61 (63)
45 2crg_A Metastasis associated p 98.1 3.8E-06 1.3E-10 68.5 5.8 44 403-446 8-52 (70)
46 4a69_C Nuclear receptor corepr 98.0 7E-06 2.4E-10 70.6 5.8 42 404-445 44-85 (94)
47 4eef_G F-HB80.4, designed hema 97.9 8.1E-07 2.8E-11 73.3 -0.9 43 403-445 20-66 (74)
48 1x58_A Hypothetical protein 49 97.9 1E-05 3.4E-10 64.8 4.9 46 402-447 7-55 (62)
49 2dip_A Zinc finger SWIM domain 97.8 4.3E-06 1.5E-10 72.6 1.8 46 345-394 31-77 (98)
50 2fc7_A ZZZ3 protein; structure 97.8 1.6E-05 5.5E-10 66.8 4.9 52 345-396 21-77 (82)
51 2xag_A Lysine-specific histone 97.6 6.8E-05 2.3E-09 86.1 6.6 87 186-275 179-269 (852)
52 1ign_A Protein (RAP1); RAP1,ye 97.5 4.5E-05 1.5E-09 75.6 4.2 46 402-447 7-58 (246)
53 1tot_A CREB-binding protein; z 97.2 9.1E-05 3.1E-09 57.2 1.2 44 345-394 6-49 (52)
54 3hm5_A DNA methyltransferase 1 96.5 0.0035 1.2E-07 54.0 5.7 44 404-447 31-79 (93)
55 2ebi_A DNA binding protein GT- 96.3 0.002 7E-08 53.7 3.2 46 403-448 4-63 (86)
56 1ug2_A 2610100B20RIK gene prod 96.1 0.007 2.4E-07 51.8 5.5 43 405-447 35-80 (95)
57 1fex_A TRF2-interacting telome 95.9 0.0058 2E-07 48.2 3.8 43 404-446 3-55 (59)
58 2aqe_A Transcriptional adaptor 95.6 0.019 6.6E-07 48.8 6.1 70 191-269 19-88 (90)
59 2cuj_A Transcriptional adaptor 95.5 0.023 7.9E-07 50.0 6.3 70 191-269 37-106 (108)
60 2elj_A Transcriptional adapter 95.1 0.032 1.1E-06 47.2 5.9 70 191-268 19-88 (88)
61 1ofc_X ISWI protein; nuclear p 95.1 0.016 5.6E-07 59.3 4.7 40 404-443 111-151 (304)
62 2xag_B REST corepressor 1; ami 94.8 0.0052 1.8E-07 66.5 0.0 44 404-447 190-233 (482)
63 2lr8_A CAsp8-associated protei 93.4 0.0073 2.5E-07 49.1 0.0 43 404-447 15-60 (70)
64 4iej_A DNA methyltransferase 1 94.1 0.075 2.6E-06 45.7 5.8 45 403-447 30-79 (93)
65 2xb0_X Chromo domain-containin 93.4 0.073 2.5E-06 53.7 5.1 31 401-431 166-197 (270)
66 4b4c_A Chromodomain-helicase-D 92.8 0.086 2.9E-06 50.2 4.4 29 403-431 134-163 (211)
67 1irz_A ARR10-B; helix-turn-hel 88.8 0.7 2.4E-05 37.1 5.5 44 403-446 7-55 (64)
68 4b4c_A Chromodomain-helicase-D 88.7 0.45 1.5E-05 45.1 5.2 39 404-442 8-51 (211)
69 1ofc_X ISWI protein; nuclear p 85.1 0.7 2.4E-05 47.3 4.5 47 402-448 211-273 (304)
70 2y9y_A Imitation switch protei 82.6 1.1 3.7E-05 47.2 4.7 43 404-447 124-168 (374)
71 2y9y_A Imitation switch protei 63.4 7.4 0.00025 40.9 5.2 45 403-447 228-288 (374)
72 3ny3_A E3 ubiquitin-protein li 60.5 4.8 0.00016 33.0 2.6 39 351-393 7-50 (75)
73 2d8v_A Zinc finger FYVE domain 59.7 11 0.00037 30.5 4.4 46 346-394 9-54 (67)
74 3nis_A E3 ubiquitin-protein li 56.9 6.4 0.00022 32.9 2.7 40 350-393 10-54 (82)
75 2heo_A Z-DNA binding protein 1 54.8 11 0.00037 29.5 3.6 54 215-270 4-57 (67)
76 2fu4_A Ferric uptake regulatio 49.7 8.5 0.00029 30.5 2.3 50 222-271 18-71 (83)
77 1v5n_A PDI-like hypothetical p 48.6 11 0.00037 31.6 2.9 32 345-377 47-78 (89)
78 1mzb_A Ferric uptake regulatio 48.6 15 0.00053 32.1 4.1 50 222-271 19-72 (136)
79 3e7l_A Transcriptional regulat 46.2 18 0.00061 27.7 3.6 27 408-434 18-44 (63)
80 1ign_A Protein (RAP1); RAP1,ye 45.5 29 0.00099 34.5 5.8 24 424-447 173-196 (246)
81 2o03_A Probable zinc uptake re 44.6 34 0.0012 29.7 5.6 53 218-271 8-64 (131)
82 2w57_A Ferric uptake regulatio 43.9 16 0.00054 32.8 3.5 50 222-271 18-71 (150)
83 2xig_A Ferric uptake regulatio 40.5 26 0.00088 31.4 4.3 50 221-271 27-80 (150)
84 2htj_A P fimbrial regulatory p 38.4 24 0.00084 27.8 3.4 46 223-271 2-47 (81)
85 1weo_A Cellulose synthase, cat 36.9 20 0.0007 30.5 2.8 31 345-376 16-51 (93)
86 3mwm_A ZUR, putative metal upt 34.3 55 0.0019 28.8 5.4 53 218-271 11-67 (139)
87 2fe3_A Peroxide operon regulat 34.1 36 0.0012 30.1 4.2 49 222-271 23-75 (145)
88 2xb0_X Chromo domain-containin 31.7 56 0.0019 32.8 5.5 36 404-439 4-44 (270)
89 4ham_A LMO2241 protein; struct 31.4 63 0.0021 28.0 5.2 57 213-271 11-71 (134)
90 3tqn_A Transcriptional regulat 29.6 53 0.0018 27.7 4.3 55 215-271 11-66 (113)
91 3eyy_A Putative iron uptake re 29.3 29 0.001 30.8 2.7 48 222-271 20-71 (145)
92 2olm_A Nucleoporin-like protei 27.9 77 0.0026 28.7 5.2 57 345-415 25-81 (140)
93 3by6_A Predicted transcription 27.5 50 0.0017 28.6 3.8 55 215-271 13-68 (126)
94 1umq_A Photosynthetic apparatu 26.6 54 0.0019 26.9 3.7 30 405-434 37-66 (81)
95 2ek5_A Predicted transcription 26.4 53 0.0018 28.7 3.8 55 215-271 6-61 (129)
96 2p57_A GTPase-activating prote 23.8 52 0.0018 30.1 3.3 60 343-414 35-94 (144)
97 1wfh_A Zinc finger (AN1-like) 23.7 90 0.0031 24.9 4.2 44 345-394 15-59 (64)
98 4ets_A Ferric uptake regulatio 22.4 83 0.0028 28.5 4.4 49 222-271 34-88 (162)
99 3c7j_A Transcriptional regulat 22.3 34 0.0012 32.6 1.9 57 213-271 26-82 (237)
100 1ntc_A Protein (nitrogen regul 21.9 55 0.0019 26.8 2.8 27 407-433 49-75 (91)
101 3r0a_A Putative transcriptiona 21.6 1.2E+02 0.0039 25.9 5.0 49 224-273 29-77 (123)
102 1wg2_A Zinc finger (AN1-like) 21.5 96 0.0033 24.8 4.0 44 345-394 15-59 (64)
103 2d1h_A ST1889, 109AA long hypo 21.4 1.2E+02 0.0039 24.0 4.7 38 236-274 35-72 (109)
104 1qgp_A Protein (double strande 21.3 1E+02 0.0035 24.6 4.3 50 221-271 14-64 (77)
105 3dpt_A ROCO, RAB family protei 20.8 69 0.0024 32.7 3.9 61 213-275 12-75 (332)
106 2x4h_A Hypothetical protein SS 20.6 1.3E+02 0.0043 25.4 5.0 54 214-271 11-64 (139)
No 1
>2fq3_A Transcription regulatory protein SWI3; four-helix bundle; 1.40A {Saccharomyces cerevisiae} SCOP: a.4.1.18
Probab=100.00 E-value=4.1e-41 Score=295.00 Aligned_cols=96 Identities=34% Similarity=0.685 Sum_probs=84.5
Q ss_pred ceeeCCCCCCCCCCCCCCHHHHhhcCcccCCCCCCCChHHHHHHHHHHHHHHHhCCCceEeHHHHhccCCCCCHHHHHHH
Q 008870 179 RVHVLPMHSDWFSPDTVHRLERQVVPHFFSGKSPDHTPEKYMECRNHIVAKYMDNPEKRLIVSDCQGLVDGVSPEDLTRI 258 (550)
Q Consensus 179 ~~ivIPSys~WF~~~~Ih~iEk~~lPEfF~g~~~~ktpe~Y~~~RN~iI~~yr~np~~yLT~t~~r~~l~g~Dv~~i~RI 258 (550)
|+=.-|+|+.||+|++||+|||++|||||+|++++|||++||+|||+||++||+||.+|||+|+||++|+| |+++|+||
T Consensus 9 ~~~~~p~~s~wF~~~~Ih~iEk~~lPEfF~g~~~~ktpe~Yl~iRN~iI~~yr~nP~~yLT~t~~r~~l~g-Dv~~i~RV 87 (104)
T 2fq3_A 9 HHGMASSYSKWFNLEKIHSIEVQSLPEFFTNRIPSKTPEVYMRYRNFMVNSYRLNPNEYFSVTTARRNVSG-DAAALFRL 87 (104)
T ss_dssp --------CTTCCTTCCCHHHHHHCGGGCCSSCTTSCHHHHHHHHHHHHHHHHHCTTSCCCHHHHHHHSCS-CHHHHHHH
T ss_pred cCCCCCCcccccCcccCCHHHHHHChHHhcCCCCCCCHHHHHHHHHHHHHHHHhCCceeeeHHHHHHHccc-cHHHHHHH
Confidence 34468999999999999999999999999999999999999999999999999999999999999999998 99999999
Q ss_pred HHHhhhccccccccCCC
Q 008870 259 FRFLNHWGIINYCAAVQ 275 (550)
Q Consensus 259 h~FLe~wGlINy~~~p~ 275 (550)
|+|||+|||||||++|+
T Consensus 88 h~FLe~wGLIN~~v~~~ 104 (104)
T 2fq3_A 88 HKFLTKWGLINYQVDSK 104 (104)
T ss_dssp HHHHHHTTSSSSCC---
T ss_pred HHHHHHcCeeccCCCCC
Confidence 99999999999999973
No 2
>2dce_A KIAA1915 protein; swirm domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=100.00 E-value=2.3e-40 Score=293.67 Aligned_cols=96 Identities=24% Similarity=0.383 Sum_probs=92.6
Q ss_pred ceeeCCCCCCCCCCCCCCHHHHhhcCcccCCCCCCCChHHHHHHHHHHHHHHHhCCCceEeHHHHhccCC--CCCHHHHH
Q 008870 179 RVHVLPMHSDWFSPDTVHRLERQVVPHFFSGKSPDHTPEKYMECRNHIVAKYMDNPEKRLIVSDCQGLVD--GVSPEDLT 256 (550)
Q Consensus 179 ~~ivIPSys~WF~~~~Ih~iEk~~lPEfF~g~~~~ktpe~Y~~~RN~iI~~yr~np~~yLT~t~~r~~l~--g~Dv~~i~ 256 (550)
.+++||+|+.||++++||+|||++|||||+|+ ++|||++||+|||+||++||+||.+|||+|+||++|. | |+++|+
T Consensus 11 ~~~~iP~~~~wf~~~~ih~iEk~~lPefF~g~-~~ktpe~Yl~iRN~iI~~yr~np~~yLT~t~~rr~L~~~g-Dv~~i~ 88 (111)
T 2dce_A 11 EELKPPEQEIEIDRNIIQEEEKQAIPEFFEGR-QAKTPERYLKIRNYILDQWEICKPKYLNKTSVRPGLKNCG-DVNCIG 88 (111)
T ss_dssp CSCCCCSSCCCCCSSCCCHHHHTTSGGGGSCC-SSCCHHHHHHHHHHHHHHHHHHTTSCCCGGGTTTTTSSSS-CHHHHH
T ss_pred cCCcCCCcccccCcccCCHHHHHhChHHhcCC-cccCHHHHHHHHHHHHHHHHhCCcceeeHHHHHHhccccc-CHHHHH
Confidence 57999999999999999999999999999998 8999999999999999999999999999999999994 6 999999
Q ss_pred HHHHHhhhccccccccCCCC
Q 008870 257 RIFRFLNHWGIINYCAAVQS 276 (550)
Q Consensus 257 RIh~FLe~wGlINy~~~p~~ 276 (550)
|||+|||+|||||||+++.+
T Consensus 89 RVh~FLe~wGLIN~~~~~~~ 108 (111)
T 2dce_A 89 RIHTYLELIGAINFGCEQAV 108 (111)
T ss_dssp HHHHHHHHHSSSSCSCTTSS
T ss_pred HHHHHHHHcCeeecCCChhh
Confidence 99999999999999999865
No 3
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=99.62 E-value=1.2e-15 Score=127.63 Aligned_cols=56 Identities=55% Similarity=1.147 Sum_probs=53.5
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCCHHHHHHHhCCCCHHHHHHHHhhCCCCCCccccC
Q 008870 402 DGETWSDQETFLLLEGIEMYNDNWNEIAEHVSTKSKAQCILHFVRLPMEDGILENV 457 (550)
Q Consensus 402 ~~~~WT~eEel~LLEaIe~yg~nW~~IA~~VgtKT~eECi~hFlqLPIED~fLe~~ 457 (550)
....||.+|+.+||++|++||++|.+||++||+||..||+.||+++||+|+|+.+.
T Consensus 17 ~~~~WT~eEd~~Ll~~v~~~G~~W~~IA~~v~~RT~~qcr~r~~~~~i~d~~~~~~ 72 (79)
T 2yus_A 17 AGREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRLPIEDPYLENS 72 (79)
T ss_dssp CSCCCCHHHHHHHHHHHHHSSSCHHHHHHHHSSCCHHHHHHHHTTSCCCCSSCCCC
T ss_pred cCCCcCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHhcccccccccC
Confidence 46789999999999999999999999999999999999999999999999999864
No 4
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=99.39 E-value=5.1e-13 Score=105.19 Aligned_cols=49 Identities=31% Similarity=0.681 Sum_probs=46.2
Q ss_pred CCCCCCHHHHHHHHHHHHHcC-CCHHHHHHHhC-CCCHHHHHHHHhhCCCC
Q 008870 402 DGETWSDQETFLLLEGIEMYN-DNWNEIAEHVS-TKSKAQCILHFVRLPME 450 (550)
Q Consensus 402 ~~~~WT~eEel~LLEaIe~yg-~nW~~IA~~Vg-tKT~eECi~hFlqLPIE 450 (550)
....||.+|+.+||++|++|| ++|.+||++|+ +||..||+.||.+++|.
T Consensus 8 ~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~~~ 58 (58)
T 2elk_A 8 FDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTYIE 58 (58)
T ss_dssp CCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHTTC
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHccC
Confidence 457899999999999999999 99999999999 99999999999999874
No 5
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.29 E-value=4.3e-12 Score=100.35 Aligned_cols=51 Identities=27% Similarity=0.588 Sum_probs=47.3
Q ss_pred CCCCCCCHHHHHHHHHHHHHcC-CCHHHHHHHhCCCCHHHHHHHHhhCCCCC
Q 008870 401 IDGETWSDQETFLLLEGIEMYN-DNWNEIAEHVSTKSKAQCILHFVRLPMED 451 (550)
Q Consensus 401 ~~~~~WT~eEel~LLEaIe~yg-~nW~~IA~~VgtKT~eECi~hFlqLPIED 451 (550)
.....||.+|+.+||++|++|| ++|.+||++|++||..||+.||.++.+..
T Consensus 6 ~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~r~~~~l~~~ 57 (60)
T 1x41_A 6 SGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKYFSGP 57 (60)
T ss_dssp CCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHHTTCS
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhCCCCHHHHHHHHHHHccCC
Confidence 3567899999999999999999 99999999999999999999999988754
No 6
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.05 E-value=1.7e-10 Score=88.26 Aligned_cols=45 Identities=22% Similarity=0.496 Sum_probs=42.1
Q ss_pred CCCCCHHHHHHHHHHHHHcC-CCHHHHHHHhCCCCHHHHHHHHhhC
Q 008870 403 GETWSDQETFLLLEGIEMYN-DNWNEIAEHVSTKSKAQCILHFVRL 447 (550)
Q Consensus 403 ~~~WT~eEel~LLEaIe~yg-~nW~~IA~~VgtKT~eECi~hFlqL 447 (550)
...||.+|+.+|+++|++|| ++|..||++|++||..||..||..+
T Consensus 3 ~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~ 48 (52)
T 1guu_A 3 KTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKV 48 (52)
T ss_dssp CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCCCCHHHHHHHHHHH
Confidence 46899999999999999999 5999999999999999999999864
No 7
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=99.04 E-value=2.3e-10 Score=87.62 Aligned_cols=45 Identities=22% Similarity=0.501 Sum_probs=42.3
Q ss_pred CCCCCHHHHHHHHHHHHHcC-CCHHHHHHHhCCCCHHHHHHHHhhC
Q 008870 403 GETWSDQETFLLLEGIEMYN-DNWNEIAEHVSTKSKAQCILHFVRL 447 (550)
Q Consensus 403 ~~~WT~eEel~LLEaIe~yg-~nW~~IA~~VgtKT~eECi~hFlqL 447 (550)
...||.+|+.+|+++|++|| ++|..||++|++||..||+.||..+
T Consensus 3 k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~ 48 (52)
T 1gvd_A 3 KGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNH 48 (52)
T ss_dssp CCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHHCcChHHHHHHHcCCCCHHHHHHHHHHH
Confidence 46899999999999999999 6899999999999999999999864
No 8
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.02 E-value=2.1e-10 Score=94.73 Aligned_cols=61 Identities=30% Similarity=0.530 Sum_probs=50.3
Q ss_pred CCceecCCCCCCCCCCCCCCCHHHHHHHHHHHHHcC----CCHHHHHHHhCCCCHHHHHHHHhhCCCCCC
Q 008870 387 LDYIRVDPAREYGDIDGETWSDQETFLLLEGIEMYN----DNWNEIAEHVSTKSKAQCILHFVRLPMEDG 452 (550)
Q Consensus 387 ~DF~kvd~~~~~~~~~~~~WT~eEel~LLEaIe~yg----~nW~~IA~~VgtKT~eECi~hFlqLPIED~ 452 (550)
.++.+.+.. ......||.+|+.+|+++|.+|| ++|.+||++|++||..||+.||..| ++|+
T Consensus 6 ~~~~~~~~~----~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpGRT~~qcr~Ry~~L-~~d~ 70 (73)
T 2cqr_A 6 SGSLRKERA----RSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLL-VSGP 70 (73)
T ss_dssp SSCCCCCTT----TCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHH-HSSC
T ss_pred ccccccccc----ccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHH-HHcc
Confidence 455555433 23567899999999999999999 6899999999999999999999986 5543
No 9
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=99.01 E-value=5.8e-10 Score=87.77 Aligned_cols=47 Identities=19% Similarity=0.516 Sum_probs=43.8
Q ss_pred CCCCCCCHHHHHHHHHHHHHcC-CCHHHHHHHhCCCCHHHHHHHHhhC
Q 008870 401 IDGETWSDQETFLLLEGIEMYN-DNWNEIAEHVSTKSKAQCILHFVRL 447 (550)
Q Consensus 401 ~~~~~WT~eEel~LLEaIe~yg-~nW~~IA~~VgtKT~eECi~hFlqL 447 (550)
.....||.+|+.+|+++|++|| ++|..||++|++||..||+.||..+
T Consensus 6 ~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~ 53 (60)
T 2d9a_A 6 SGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRWLRV 53 (60)
T ss_dssp CCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCSSSCHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHccCCCHHHHHHHHHHH
Confidence 3467899999999999999999 7999999999999999999999874
No 10
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.99 E-value=3e-10 Score=93.22 Aligned_cols=48 Identities=17% Similarity=0.322 Sum_probs=43.8
Q ss_pred CCCCCCCHHHHHHHHHHHHHcC------CCHHHHHHHhCCCCHHHHHHHHhhCC
Q 008870 401 IDGETWSDQETFLLLEGIEMYN------DNWNEIAEHVSTKSKAQCILHFVRLP 448 (550)
Q Consensus 401 ~~~~~WT~eEel~LLEaIe~yg------~nW~~IA~~VgtKT~eECi~hFlqLP 448 (550)
.....||.+|+.+|+++|++|| ++|.+||++|++||..||+.||.++-
T Consensus 6 ~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~Rt~~qcr~r~~~~l 59 (75)
T 2yum_A 6 SGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASQVQKYF 59 (75)
T ss_dssp CCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSSSCHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 3457899999999999999999 79999999999999999999997653
No 11
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=98.99 E-value=5.3e-10 Score=86.09 Aligned_cols=44 Identities=20% Similarity=0.406 Sum_probs=41.8
Q ss_pred CCCCHHHHHHHHHHHHHcC-CCHHHHHHHhC--CCCHHHHHHHHhhC
Q 008870 404 ETWSDQETFLLLEGIEMYN-DNWNEIAEHVS--TKSKAQCILHFVRL 447 (550)
Q Consensus 404 ~~WT~eEel~LLEaIe~yg-~nW~~IA~~Vg--tKT~eECi~hFlqL 447 (550)
..||.+|+.+|+++|++|| ++|..||++++ +||..||..||..+
T Consensus 3 ~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~ 49 (53)
T 1w0t_A 3 QAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTM 49 (53)
T ss_dssp CCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 5799999999999999999 89999999999 99999999999864
No 12
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.97 E-value=7.6e-10 Score=90.37 Aligned_cols=47 Identities=15% Similarity=0.308 Sum_probs=44.1
Q ss_pred CCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHhCCCCHHHHHHHHhhC
Q 008870 401 IDGETWSDQETFLLLEGIEMYNDNWNEIAEHVSTKSKAQCILHFVRL 447 (550)
Q Consensus 401 ~~~~~WT~eEel~LLEaIe~yg~nW~~IA~~VgtKT~eECi~hFlqL 447 (550)
.....||.+|+.+||+++++||.+|..||++|++||..||..||..+
T Consensus 7 ~~~~~WT~eEd~~l~~~~~~~G~~W~~Ia~~~~~Rt~~q~k~r~~~~ 53 (72)
T 2cu7_A 7 GYSVKWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQY 53 (72)
T ss_dssp SCCCCCCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHH
Confidence 35678999999999999999999999999999999999999999875
No 13
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.95 E-value=1.3e-09 Score=88.38 Aligned_cols=46 Identities=26% Similarity=0.567 Sum_probs=43.6
Q ss_pred CCCCCCHHHHHHHHHHHHHcC-CCHHHHHHHhCCCCHHHHHHHHhhC
Q 008870 402 DGETWSDQETFLLLEGIEMYN-DNWNEIAEHVSTKSKAQCILHFVRL 447 (550)
Q Consensus 402 ~~~~WT~eEel~LLEaIe~yg-~nW~~IA~~VgtKT~eECi~hFlqL 447 (550)
....||.+|+.+|+++|++|| ++|..||++|++||..||+.||.++
T Consensus 8 k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~~Rt~~qcr~Rw~~~ 54 (70)
T 2dim_A 8 KGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEW 54 (70)
T ss_dssp TTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHSTTCCHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhcCCCHHHHHHHHHHH
Confidence 457899999999999999999 9999999999999999999999885
No 14
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.93 E-value=1.3e-09 Score=89.97 Aligned_cols=48 Identities=21% Similarity=0.461 Sum_probs=43.9
Q ss_pred CCCCCCHHHHHHHHHHHHHcC----CCHHHHHHHhCCCCHHHHHHHHhhCCC
Q 008870 402 DGETWSDQETFLLLEGIEMYN----DNWNEIAEHVSTKSKAQCILHFVRLPM 449 (550)
Q Consensus 402 ~~~~WT~eEel~LLEaIe~yg----~nW~~IA~~VgtKT~eECi~hFlqLPI 449 (550)
....||.+|+.+|.+||..|+ ++|++||.+||+||.+||+.||..|+-
T Consensus 7 ~~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~gKT~eE~~~hY~~l~~ 58 (73)
T 1wgx_A 7 GDKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMENPR 58 (73)
T ss_dssp SSSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHSSS
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcCCCCHHHHHHHHHHHHh
Confidence 356899999999999999997 579999999999999999999999843
No 15
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=98.90 E-value=1.6e-09 Score=87.01 Aligned_cols=45 Identities=16% Similarity=0.440 Sum_probs=41.7
Q ss_pred CCCCCHHHHHHHHHHHHHcC-CCHHHHHHHhC--CCCHHHHHHHHhhC
Q 008870 403 GETWSDQETFLLLEGIEMYN-DNWNEIAEHVS--TKSKAQCILHFVRL 447 (550)
Q Consensus 403 ~~~WT~eEel~LLEaIe~yg-~nW~~IA~~Vg--tKT~eECi~hFlqL 447 (550)
...||.+|+.+|+++|++|| ++|..||++++ +||..||..+|..|
T Consensus 11 k~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl 58 (64)
T 3sjm_A 11 KQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTM 58 (64)
T ss_dssp CCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHH
Confidence 56899999999999999999 89999999977 89999999999764
No 16
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=98.87 E-value=2.3e-09 Score=86.78 Aligned_cols=46 Identities=20% Similarity=0.385 Sum_probs=43.3
Q ss_pred CCCCCCHHHHHHHHHHHHHcC-CCHHHHHHHhC--CCCHHHHHHHHhhC
Q 008870 402 DGETWSDQETFLLLEGIEMYN-DNWNEIAEHVS--TKSKAQCILHFVRL 447 (550)
Q Consensus 402 ~~~~WT~eEel~LLEaIe~yg-~nW~~IA~~Vg--tKT~eECi~hFlqL 447 (550)
....||.+|+.+|+++|++|| ++|..||++++ +||..||..||..+
T Consensus 9 ~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~ 57 (69)
T 1ity_A 9 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTM 57 (69)
T ss_dssp SCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHH
Confidence 357899999999999999999 89999999999 99999999999875
No 17
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.81 E-value=5.5e-09 Score=83.74 Aligned_cols=45 Identities=29% Similarity=0.544 Sum_probs=41.5
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCCHHHHHHHhCCCCHHHHHHHHhhC
Q 008870 402 DGETWSDQETFLLLEGIEMYNDNWNEIAEHVSTKSKAQCILHFVRL 447 (550)
Q Consensus 402 ~~~~WT~eEel~LLEaIe~yg~nW~~IA~~VgtKT~eECi~hFlqL 447 (550)
....||.+|+.+|+++++.||.+|.+||+.+| ||..||+.||..+
T Consensus 8 ~k~~WT~eED~~L~~~~~~~g~~W~~Ia~~~g-Rt~~qcr~Rw~~~ 52 (66)
T 2din_A 8 KKTEWSREEEEKLLHLAKLMPTQWRTIAPIIG-RTAAQCLEHYEFL 52 (66)
T ss_dssp SCCCCCHHHHHHHHHHHHHCTTCHHHHHHHHS-SCHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCHHHHhcccC-cCHHHHHHHHHHH
Confidence 45789999999999999999999999999665 9999999999975
No 18
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.72 E-value=1.6e-08 Score=80.24 Aligned_cols=44 Identities=23% Similarity=0.396 Sum_probs=41.6
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCHHHHHHHhCCCCHHHHHHHHhh
Q 008870 403 GETWSDQETFLLLEGIEMYNDNWNEIAEHVSTKSKAQCILHFVR 446 (550)
Q Consensus 403 ~~~WT~eEel~LLEaIe~yg~nW~~IA~~VgtKT~eECi~hFlq 446 (550)
...||.+|..+|++++.+||.+|..||.+|++||..||+.+|..
T Consensus 12 ~~~WT~eE~~~F~~~~~~~gk~w~~Ia~~l~~rt~~~~v~~Yy~ 55 (61)
T 2eqr_A 12 MNVWTDHEKEIFKDKFIQHPKNFGLIASYLERKSVPDCVLYYYL 55 (61)
T ss_dssp CCSCCHHHHHHHHHHHHHSTTCHHHHHHHCTTSCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHH
Confidence 46899999999999999999999999999999999999999863
No 19
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=98.70 E-value=2.4e-08 Score=82.36 Aligned_cols=46 Identities=13% Similarity=0.080 Sum_probs=42.8
Q ss_pred CCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHhCCCCHHHHHHHHhhC
Q 008870 401 IDGETWSDQETFLLLEGIEMYNDNWNEIAEHVSTKSKAQCILHFVRL 447 (550)
Q Consensus 401 ~~~~~WT~eEel~LLEaIe~yg~nW~~IA~~VgtKT~eECi~hFlqL 447 (550)
.....||.+|+.+|++++++||..|.+||+++ +||..||..||..|
T Consensus 21 i~k~~wT~EED~~L~~l~~~~G~kW~~IA~~l-gRt~~q~knRw~~L 66 (73)
T 2llk_A 21 NHVGKYTPEEIEKLKELRIKHGNDWATIGAAL-GRSASSVKDRCRLM 66 (73)
T ss_dssp CCCCSSCHHHHHHHHHHHHHHSSCHHHHHHHH-TSCHHHHHHHHHHC
T ss_pred CCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHh-CCCHHHHHHHHHHH
Confidence 34679999999999999999998899999999 99999999999875
No 20
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=98.70 E-value=1.2e-08 Score=87.78 Aligned_cols=45 Identities=24% Similarity=0.579 Sum_probs=42.2
Q ss_pred CCCCCHHHHHHHHHHHHHcC----CCHHHHHHHhCCCCHHHHHHHHhhC
Q 008870 403 GETWSDQETFLLLEGIEMYN----DNWNEIAEHVSTKSKAQCILHFVRL 447 (550)
Q Consensus 403 ~~~WT~eEel~LLEaIe~yg----~nW~~IA~~VgtKT~eECi~hFlqL 447 (550)
...||.+|+.+|+++|.+|+ +.|.+||++|++||.+||+.||..|
T Consensus 8 ~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vpGRT~~q~k~ry~~l 56 (93)
T 2cjj_A 8 GRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEIL 56 (93)
T ss_dssp CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHH
Confidence 46899999999999999996 5799999999999999999999986
No 21
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=98.15 E-value=1.9e-09 Score=91.84 Aligned_cols=47 Identities=23% Similarity=0.432 Sum_probs=43.8
Q ss_pred CCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHhCCCCHHHHHHHHhhC
Q 008870 401 IDGETWSDQETFLLLEGIEMYNDNWNEIAEHVSTKSKAQCILHFVRL 447 (550)
Q Consensus 401 ~~~~~WT~eEel~LLEaIe~yg~nW~~IA~~VgtKT~eECi~hFlqL 447 (550)
.....||.+|+.+||+++++||.+|..||++|++||..||..||..+
T Consensus 14 ~~~~~WT~eEd~~l~~~~~~~G~~W~~IA~~l~gRt~~q~k~r~~~~ 60 (89)
T 2ltp_A 14 LYFQGWTEEEMGTAKKGLLEHGRNWSAIARMVGSKTVSQCKNFYFNY 60 (89)
Confidence 34678999999999999999999999999999999999999999864
No 22
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=98.65 E-value=2.4e-08 Score=86.97 Aligned_cols=44 Identities=18% Similarity=0.410 Sum_probs=41.6
Q ss_pred CCCCHHHHHHHHHHHHHcC-CCHHHHHHHhCCCCHHHHHHHHhhC
Q 008870 404 ETWSDQETFLLLEGIEMYN-DNWNEIAEHVSTKSKAQCILHFVRL 447 (550)
Q Consensus 404 ~~WT~eEel~LLEaIe~yg-~nW~~IA~~VgtKT~eECi~hFlqL 447 (550)
..||.+|+.+|+++|++|| ++|..||++|++||..||..||.++
T Consensus 2 ~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~ 46 (107)
T 2k9n_A 2 VKFTEEEDLKLQQLVMRYGAKDWIRISQLMITRNPRQCRERWNNY 46 (107)
T ss_dssp CSSCHHHHHHHHHHHHHHCSSCHHHHHHHTTTSCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCHHHHhhhcCCCCHHHHHHHHHHH
Confidence 4799999999999999999 6999999999999999999999873
No 23
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=98.65 E-value=2.8e-08 Score=85.91 Aligned_cols=46 Identities=20% Similarity=0.447 Sum_probs=43.0
Q ss_pred CCCCCCHHHHHHHHHHHHHcC-CCHHHHHHHhCCCCHHHHHHHHhhC
Q 008870 402 DGETWSDQETFLLLEGIEMYN-DNWNEIAEHVSTKSKAQCILHFVRL 447 (550)
Q Consensus 402 ~~~~WT~eEel~LLEaIe~yg-~nW~~IA~~VgtKT~eECi~hFlqL 447 (550)
....||.+|+.+|+++|++|| ++|..||++|++||..||..||.++
T Consensus 3 ~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~ 49 (105)
T 1gv2_A 3 IKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNH 49 (105)
T ss_dssp CCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCcHHHHhhhhcCCCHHHHHHHHHhc
Confidence 356899999999999999999 6899999999999999999999985
No 24
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=98.58 E-value=6.7e-08 Score=84.20 Aligned_cols=46 Identities=22% Similarity=0.495 Sum_probs=43.2
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCCHHHHHHHhCCCCHHHHHHHHhhC
Q 008870 402 DGETWSDQETFLLLEGIEMYNDNWNEIAEHVSTKSKAQCILHFVRL 447 (550)
Q Consensus 402 ~~~~WT~eEel~LLEaIe~yg~nW~~IA~~VgtKT~eECi~hFlqL 447 (550)
....||.+|+.+||+++..||.+|..||++|++||..||..||..|
T Consensus 52 ~~~~WT~eEd~~L~~~~~~~G~~W~~Ia~~l~gRt~~~~k~rw~~l 97 (107)
T 2k9n_A 52 RTDPWSPEEDMLLDQKYAEYGPKWNKISKFLKNRSDNNIRNRWMMI 97 (107)
T ss_dssp TTCCCCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHHHH
T ss_pred cccccCHHHHHHHHHHHHHhCcCHHHHHHHCCCCCHHHHHHHHHHH
Confidence 3578999999999999999999999999999999999999999864
No 25
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=98.57 E-value=8.6e-08 Score=85.84 Aligned_cols=46 Identities=22% Similarity=0.562 Sum_probs=43.0
Q ss_pred CCCCCCHHHHHHHHHHHHHcC-CCHHHHHHHhCCCCHHHHHHHHhhC
Q 008870 402 DGETWSDQETFLLLEGIEMYN-DNWNEIAEHVSTKSKAQCILHFVRL 447 (550)
Q Consensus 402 ~~~~WT~eEel~LLEaIe~yg-~nW~~IA~~VgtKT~eECi~hFlqL 447 (550)
....||.+|+.+|+++|++|| ++|.+||++|++||..||..||..+
T Consensus 26 ~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~ 72 (128)
T 1h8a_C 26 NKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERWHNH 72 (128)
T ss_dssp CCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSSSCCHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhcCCcHHHHHHHHHHh
Confidence 457899999999999999999 6899999999999999999999973
No 26
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=98.56 E-value=5.9e-08 Score=86.97 Aligned_cols=46 Identities=15% Similarity=0.356 Sum_probs=43.3
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCCHHHHHHHhCCCCHHHHHHHHhhC
Q 008870 402 DGETWSDQETFLLLEGIEMYNDNWNEIAEHVSTKSKAQCILHFVRL 447 (550)
Q Consensus 402 ~~~~WT~eEel~LLEaIe~yg~nW~~IA~~VgtKT~eECi~hFlqL 447 (550)
....||.+|+.+|+++|++||.+|..||++|++||..||+.||.++
T Consensus 10 kk~~WT~eED~~L~~~v~~~G~~W~~Ia~~~~~Rt~~qcr~Rw~~~ 55 (126)
T 3osg_A 10 KKQKFTPEEDEMLKRAVAQHGSDWKMIAATFPNRNARQCRDRWKNY 55 (126)
T ss_dssp SSCCCCHHHHHHHHHHHHHHTTCHHHHHHTCTTCCHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHhhh
Confidence 4578999999999999999999999999999999999999999973
No 27
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=98.55 E-value=7.2e-08 Score=81.39 Aligned_cols=44 Identities=16% Similarity=0.292 Sum_probs=41.2
Q ss_pred CCCCHHHHHHHHHHHHHcC-CCHHHHHHH----hCCCCHHHHHHHHhhC
Q 008870 404 ETWSDQETFLLLEGIEMYN-DNWNEIAEH----VSTKSKAQCILHFVRL 447 (550)
Q Consensus 404 ~~WT~eEel~LLEaIe~yg-~nW~~IA~~----VgtKT~eECi~hFlqL 447 (550)
..||.+|+..|+++|++|| |+|.+|++. +.+||..+|..||..+
T Consensus 1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~RT~~~lKdrWrnl 49 (83)
T 2ckx_A 1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTL 49 (83)
T ss_dssp CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCCCCHHHHHHHHHHH
Confidence 3699999999999999999 899999997 7899999999999886
No 28
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=98.55 E-value=6.3e-08 Score=83.72 Aligned_cols=46 Identities=15% Similarity=0.418 Sum_probs=43.0
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCCHHHHHHHhCCCCHHHHHHHHhhC
Q 008870 402 DGETWSDQETFLLLEGIEMYNDNWNEIAEHVSTKSKAQCILHFVRL 447 (550)
Q Consensus 402 ~~~~WT~eEel~LLEaIe~yg~nW~~IA~~VgtKT~eECi~hFlqL 447 (550)
....||.+|+.+|++++.+||.+|..||++|++||..||..||..+
T Consensus 55 ~~~~Wt~eEd~~L~~~~~~~G~~W~~Ia~~l~gRt~~~~k~rw~~~ 100 (105)
T 1gv2_A 55 KKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNST 100 (105)
T ss_dssp CCCCCCHHHHHHHHHHHHHHSSCHHHHHTTCTTCCHHHHHHHHHHH
T ss_pred cccCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHH
Confidence 4578999999999999999999999999999999999999999753
No 29
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=98.53 E-value=7.1e-08 Score=86.45 Aligned_cols=46 Identities=22% Similarity=0.489 Sum_probs=43.2
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCCHHHHHHHhCCCCHHHHHHHHhhC
Q 008870 402 DGETWSDQETFLLLEGIEMYNDNWNEIAEHVSTKSKAQCILHFVRL 447 (550)
Q Consensus 402 ~~~~WT~eEel~LLEaIe~yg~nW~~IA~~VgtKT~eECi~hFlqL 447 (550)
....||.+|+.+||+++.+||.+|..||++|++||..+|..||..|
T Consensus 61 ~~~~WT~eEd~~L~~~v~~~G~~W~~Ia~~l~gRt~~~~k~rw~~l 106 (126)
T 3osg_A 61 SHTPWTAEEDALLVQKIQEYGRQWAIIAKFFPGRTDIHIKNRWVTI 106 (126)
T ss_dssp CCSCCCHHHHHHHHHHHHHHCSCHHHHHTTSTTCCHHHHHHHHHHH
T ss_pred ccccCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHH
Confidence 3568999999999999999999999999999999999999999874
No 30
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=98.51 E-value=1.1e-07 Score=93.42 Aligned_cols=46 Identities=24% Similarity=0.479 Sum_probs=43.3
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCCHHHHHHHhCCCCHHHHHHHHhhC
Q 008870 402 DGETWSDQETFLLLEGIEMYNDNWNEIAEHVSTKSKAQCILHFVRL 447 (550)
Q Consensus 402 ~~~~WT~eEel~LLEaIe~yg~nW~~IA~~VgtKT~eECi~hFlqL 447 (550)
....||.+|..++++|+.+||.||..||++||+||..||+.||..+
T Consensus 132 ~s~~WTeEE~~lFleAl~kYGKDW~~IAk~VgTKT~~QcKnfY~~~ 177 (235)
T 2iw5_B 132 CNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNY 177 (235)
T ss_dssp CCSSCCHHHHHHHHHHHHHHSSCHHHHHHHHSSCCHHHHHHHHHHT
T ss_pred cCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHH
Confidence 3568999999999999999999999999999999999999999865
No 31
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=98.47 E-value=4.7e-08 Score=88.04 Aligned_cols=44 Identities=20% Similarity=0.402 Sum_probs=42.0
Q ss_pred CCCCHHHHHHHHHHHHHcC-CCHHHHHHHhCCCCHHHHHHHHhhC
Q 008870 404 ETWSDQETFLLLEGIEMYN-DNWNEIAEHVSTKSKAQCILHFVRL 447 (550)
Q Consensus 404 ~~WT~eEel~LLEaIe~yg-~nW~~IA~~VgtKT~eECi~hFlqL 447 (550)
..||.+|+.+|+++|++|| ++|..||++|++||..||..||.++
T Consensus 3 g~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~ 47 (131)
T 3zqc_A 3 GPFTEAEDDLIREYVKENGPQNWPRITSFLPNRSPKQCRERWFNH 47 (131)
T ss_dssp SSCCHHHHHHHHHHHHHHCSCCGGGGTTSCTTSCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCcCCHHHHHHHHCCCCHHHHHHHHhhc
Confidence 5799999999999999999 8999999999999999999999874
No 32
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=98.46 E-value=1.7e-07 Score=83.83 Aligned_cols=46 Identities=15% Similarity=0.426 Sum_probs=43.3
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCCHHHHHHHhCCCCHHHHHHHHhhC
Q 008870 402 DGETWSDQETFLLLEGIEMYNDNWNEIAEHVSTKSKAQCILHFVRL 447 (550)
Q Consensus 402 ~~~~WT~eEel~LLEaIe~yg~nW~~IA~~VgtKT~eECi~hFlqL 447 (550)
....||.+|+.+||+++.+||.+|..||++|++||..+|..||..+
T Consensus 78 ~~~~WT~eEd~~L~~~~~~~G~~W~~Ia~~l~gRt~~~~k~r~~~~ 123 (128)
T 1h8a_C 78 KKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAVKNHWNST 123 (128)
T ss_dssp CCSCCCHHHHHHHHHHHHHHCSCHHHHGGGSTTCCHHHHHHHHHTT
T ss_pred ccccCCHHHHHHHHHHHHHHCcCHHHHHHHCCCCCHHHHHHHHHHH
Confidence 3578999999999999999999999999999999999999999865
No 33
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=98.45 E-value=1.8e-07 Score=84.22 Aligned_cols=46 Identities=11% Similarity=0.244 Sum_probs=43.4
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCCHHHHHHHhCCCCHHHHHHHHhhC
Q 008870 402 DGETWSDQETFLLLEGIEMYNDNWNEIAEHVSTKSKAQCILHFVRL 447 (550)
Q Consensus 402 ~~~~WT~eEel~LLEaIe~yg~nW~~IA~~VgtKT~eECi~hFlqL 447 (550)
....||.+|+.+||+++..||.+|..||++|++||..+|..||..+
T Consensus 53 ~~~~Wt~eEd~~L~~~~~~~G~~W~~Ia~~l~gRt~~~~k~rw~~~ 98 (131)
T 3zqc_A 53 VKHAWTPEEDETIFRNYLKLGSKWSVIAKLIPGRTDNAIKNRWNSS 98 (131)
T ss_dssp CCSCCCHHHHHHHHHHHHHSCSCHHHHTTTSTTCCHHHHHHHHHHT
T ss_pred cCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHH
Confidence 3568999999999999999999999999999999999999999876
No 34
>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A
Probab=98.42 E-value=1.3e-07 Score=104.85 Aligned_cols=87 Identities=20% Similarity=0.364 Sum_probs=74.4
Q ss_pred CCCCCCCCCCCHHHHhhcCcccCCCCCCCChHHHHHHHHHHHHHHHhCCCceEeHHHHhcc----CCCCCHHHHHHHHHH
Q 008870 186 HSDWFSPDTVHRLERQVVPHFFSGKSPDHTPEKYMECRNHIVAKYMDNPEKRLIVSDCQGL----VDGVSPEDLTRIFRF 261 (550)
Q Consensus 186 ys~WF~~~~Ih~iEk~~lPEfF~g~~~~ktpe~Y~~~RN~iI~~yr~np~~yLT~t~~r~~----l~g~Dv~~i~RIh~F 261 (550)
+++-|+.+.+|+.|+.+|||+..+. ..+...|+.|||.|+.+|+.||..+||+.+|... +.. |...|.+|++|
T Consensus 8 ~~~~l~~~~l~~~E~~~~~~~~~~~--~~~~~~yl~irn~~~~~w~~~~~~~~~~~~~~~~~~r~~~~-~~~~i~~~~~~ 84 (662)
T 2z3y_A 8 FQSRLPHDRMTSQEAACFPDIISGP--QQTQKVFLFIRNRTLQLWLDNPKIQLTFEATLQQLEAPYNS-DTVLVHRVHSY 84 (662)
T ss_dssp HHTTCCTTSCCHHHHHHCHHHHTSC--HHHHHHHHHHHHHHHHHHHTCTTBCCCHHHHHHHSCTTGGG-CHHHHHHHHHH
T ss_pred HHcCCCCCCCCHHHHHHhHHHHcCc--hHHHHHHHHHHHHHHHHHHHCCCcccCHHHHHHhcCCCccC-ChHHHHHHHHH
Confidence 3567899999999999999998652 2356799999999999999999999999998433 333 77899999999
Q ss_pred hhhccccccccCCC
Q 008870 262 LNHWGIINYCAAVQ 275 (550)
Q Consensus 262 Le~wGlINy~~~p~ 275 (550)
|.++|+||+++.+.
T Consensus 85 ~~~~~~~~~~~~~~ 98 (662)
T 2z3y_A 85 LERHGLINFGIYKR 98 (662)
T ss_dssp HHHTTSSSCSSCBC
T ss_pred HHHHHHHhcCCccc
Confidence 99999999887764
No 35
>4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A*
Probab=98.40 E-value=3.3e-07 Score=104.12 Aligned_cols=91 Identities=23% Similarity=0.284 Sum_probs=75.7
Q ss_pred CceeeCCCCCCCCCC------------CCCCHHHHhhcCcccCCCCCCCChHHHHHHHHHHHHHHHhCCCceEeHHHHhc
Q 008870 178 SRVHVLPMHSDWFSP------------DTVHRLERQVVPHFFSGKSPDHTPEKYMECRNHIVAKYMDNPEKRLIVSDCQG 245 (550)
Q Consensus 178 t~~ivIPSys~WF~~------------~~Ih~iEk~~lPEfF~g~~~~ktpe~Y~~~RN~iI~~yr~np~~yLT~t~~r~ 245 (550)
.+...+..|-.||-. +.++..|+..||||..+ +..|+.|||.|+.+|+.||...||...|++
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~a~~~~p~~~~~~e~~~fp~~~~~------~~~yl~irn~il~~w~~np~~~l~~~~~~~ 287 (776)
T 4gut_A 214 VHVPGMNRYFQPFYQPNECGKALCVRPDVMELDELYEFPEYSRD------PTMYLALRNLILALWYTNCKEALTPQKCIP 287 (776)
T ss_dssp ----CCCTTCCCBCCTTCCCCSSCBCTTSCCHHHHHHCGGGSSC------CHHHHHHHHHHHHHHHHCTTSCCCHHHHGG
T ss_pred ccccccccccccccCCCccccchhcCCCcCChHHHHhChHHHhc------CceeeeehHHHHHHHHHCCceeeeHHHhhh
Confidence 445677889999976 99999999999999854 569999999999999999999999999987
Q ss_pred cCCC---C---CHHHHHHHHHHhhhccccccccCC
Q 008870 246 LVDG---V---SPEDLTRIFRFLNHWGIINYCAAV 274 (550)
Q Consensus 246 ~l~g---~---Dv~~i~RIh~FLe~wGlINy~~~p 274 (550)
.+.- . .+..+.+|++||.++|+||+++..
T Consensus 288 ~~~~r~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (776)
T 4gut_A 288 HIIVRGLVRIRCVQEVERILYFMTRKGLINTGVLS 322 (776)
T ss_dssp GCCCSSTHHHHHHHHHHHHHHHHHHHTSSSCTTCC
T ss_pred hcccccccccccHHHHHHHHHHHHHhhhhhccccc
Confidence 6632 1 346689999999999999998753
No 36
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.35 E-value=8.4e-07 Score=70.91 Aligned_cols=45 Identities=18% Similarity=0.406 Sum_probs=41.6
Q ss_pred CCCCCCCHHHHHHHHHHHHHcCCCHHHHHHH-hCCCCHHHHHHHHh
Q 008870 401 IDGETWSDQETFLLLEGIEMYNDNWNEIAEH-VSTKSKAQCILHFV 445 (550)
Q Consensus 401 ~~~~~WT~eEel~LLEaIe~yg~nW~~IA~~-VgtKT~eECi~hFl 445 (550)
.....||++|..++++|+.+||-||..|+++ |++||..||+.+|.
T Consensus 7 ~~~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY 52 (63)
T 2yqk_A 7 GIEKCWTEDEVKRFVKGLRQYGKNFFRIRKELLPNKETGELITFYY 52 (63)
T ss_dssp CCCCSCCHHHHHHHHHHHHHTCSCHHHHHHHSCTTSCHHHHHHHHH
T ss_pred cCCCCcCHHHHHHHHHHHHHhCccHHHHHHHHcCCCcHHHHHHHHh
Confidence 3457899999999999999999999999996 99999999999985
No 37
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.33 E-value=6e-07 Score=73.83 Aligned_cols=49 Identities=14% Similarity=0.365 Sum_probs=43.5
Q ss_pred CCCCCCHHHHHHHHHHHHHcC----CCHHHHHHHhCCCCHHHHHHHHhhCCCCCC
Q 008870 402 DGETWSDQETFLLLEGIEMYN----DNWNEIAEHVSTKSKAQCILHFVRLPMEDG 452 (550)
Q Consensus 402 ~~~~WT~eEel~LLEaIe~yg----~nW~~IA~~VgtKT~eECi~hFlqLPIED~ 452 (550)
....||.+|+.+|..++.+|+ +.|++||++|| ||.+||+.||..| .+|.
T Consensus 7 ~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~lg-Rt~~eV~~~y~~L-~~d~ 59 (72)
T 2cqq_A 7 GAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHELG-RSVTDVTTKAKQL-KDSV 59 (72)
T ss_dssp CCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHHT-SCHHHHHHHHHHH-HHSC
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHhC-CCHHHHHHHHHHH-HHhc
Confidence 356899999999999999997 56999999995 9999999999988 5564
No 38
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=98.28 E-value=7.9e-07 Score=80.06 Aligned_cols=46 Identities=15% Similarity=0.259 Sum_probs=42.5
Q ss_pred CCCCCCHHHHHHHHHHHHHcC-CCHHHHHHHh----CCCCHHHHHHHHhhC
Q 008870 402 DGETWSDQETFLLLEGIEMYN-DNWNEIAEHV----STKSKAQCILHFVRL 447 (550)
Q Consensus 402 ~~~~WT~eEel~LLEaIe~yg-~nW~~IA~~V----gtKT~eECi~hFlqL 447 (550)
....||.+|+..|+++|++|| |+|.+|+++. .+||..+|..+|..+
T Consensus 30 ~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnl 80 (122)
T 2roh_A 30 IRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTL 80 (122)
T ss_dssp CCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHH
Confidence 357899999999999999999 8999999986 689999999999886
No 39
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=98.27 E-value=1e-06 Score=81.59 Aligned_cols=46 Identities=20% Similarity=0.447 Sum_probs=42.9
Q ss_pred CCCCCCHHHHHHHHHHHHHcC-CCHHHHHHHhCCCCHHHHHHHHhhC
Q 008870 402 DGETWSDQETFLLLEGIEMYN-DNWNEIAEHVSTKSKAQCILHFVRL 447 (550)
Q Consensus 402 ~~~~WT~eEel~LLEaIe~yg-~nW~~IA~~VgtKT~eECi~hFlqL 447 (550)
....||.+|+.+|+++++.|| ++|..||++|++||..||..||..+
T Consensus 57 ~~~~Wt~eEd~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~ 103 (159)
T 1h89_C 57 IKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNH 103 (159)
T ss_dssp CCSCCCHHHHHHHHHHHHHHCSCCHHHHHHTSTTCCHHHHHHHHHHT
T ss_pred CCCCCChHHHHHHHHHHHHhCcccHHHHHHHcCCCCHHHHHHHHHHH
Confidence 457899999999999999999 6899999999999999999999874
No 40
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=98.24 E-value=9.6e-07 Score=95.20 Aligned_cols=46 Identities=24% Similarity=0.479 Sum_probs=43.3
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCCHHHHHHHhCCCCHHHHHHHHhhC
Q 008870 402 DGETWSDQETFLLLEGIEMYNDNWNEIAEHVSTKSKAQCILHFVRL 447 (550)
Q Consensus 402 ~~~~WT~eEel~LLEaIe~yg~nW~~IA~~VgtKT~eECi~hFlqL 447 (550)
....||.+|.+++|+||.+||.||..||++|||||..||+.||..+
T Consensus 379 ~~~~WT~eE~~~f~~al~~yGkdw~~IA~~VgTKT~~Qvk~fy~~~ 424 (482)
T 2xag_B 379 CNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNY 424 (482)
T ss_dssp CCSCCCHHHHHHHHHHHHHHTTCHHHHHHHHSSCCHHHHHHHHHHT
T ss_pred cCCCCCHHHHHHHHHHHHHHCcCHHHHHHHhCCCCHHHHHHHHHHH
Confidence 3578999999999999999999999999999999999999999864
No 41
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=98.24 E-value=1.1e-06 Score=81.32 Aligned_cols=46 Identities=15% Similarity=0.418 Sum_probs=43.4
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCCHHHHHHHhCCCCHHHHHHHHhhC
Q 008870 402 DGETWSDQETFLLLEGIEMYNDNWNEIAEHVSTKSKAQCILHFVRL 447 (550)
Q Consensus 402 ~~~~WT~eEel~LLEaIe~yg~nW~~IA~~VgtKT~eECi~hFlqL 447 (550)
....||.+|+.+||+++.+||..|..||++|++||..+|..||..+
T Consensus 109 ~~~~WT~eEd~~L~~~~~~~g~~W~~Ia~~l~gRt~~~~knr~~~~ 154 (159)
T 1h89_C 109 KKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNST 154 (159)
T ss_dssp CCSCCCHHHHHHHHHHHHHHCSCHHHHHTTSTTCCHHHHHHHHHTT
T ss_pred cccCCChHHHHHHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHHHHH
Confidence 3578999999999999999999999999999999999999999875
No 42
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=98.23 E-value=7.5e-07 Score=78.29 Aligned_cols=46 Identities=13% Similarity=0.211 Sum_probs=42.3
Q ss_pred CCCCCCHHHHHHHHHHHHHcC-CCHHHHHHHh----CCCCHHHHHHHHhhC
Q 008870 402 DGETWSDQETFLLLEGIEMYN-DNWNEIAEHV----STKSKAQCILHFVRL 447 (550)
Q Consensus 402 ~~~~WT~eEel~LLEaIe~yg-~nW~~IA~~V----gtKT~eECi~hFlqL 447 (550)
....||.+|+..|+++|++|| |+|.+|++.. .+||..+|..+|..|
T Consensus 12 ~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnl 62 (105)
T 2aje_A 12 IRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTL 62 (105)
T ss_dssp CCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHH
Confidence 457899999999999999999 8999999976 689999999999875
No 43
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=98.17 E-value=1.9e-06 Score=77.50 Aligned_cols=46 Identities=15% Similarity=0.245 Sum_probs=42.4
Q ss_pred CCCCCCHHHHHHHHHHHHHcC-CCHHHHHHHh----CCCCHHHHHHHHhhC
Q 008870 402 DGETWSDQETFLLLEGIEMYN-DNWNEIAEHV----STKSKAQCILHFVRL 447 (550)
Q Consensus 402 ~~~~WT~eEel~LLEaIe~yg-~nW~~IA~~V----gtKT~eECi~hFlqL 447 (550)
....||.+|+..|+++|++|| |+|.+|+++. .+||..+|..||..+
T Consensus 16 ~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnl 66 (121)
T 2juh_A 16 IRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTL 66 (121)
T ss_dssp SSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHH
Confidence 457899999999999999999 7999999996 689999999999875
No 44
>2e5r_A Dystrobrevin alpha; ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.13 E-value=2e-06 Score=68.91 Aligned_cols=48 Identities=25% Similarity=0.541 Sum_probs=43.7
Q ss_pred ccCCCCCCC-CCcceeeccCCcCcccChhhhhcCCCCCCCC-CCCceecC
Q 008870 346 NHCNYCSQP-IPAVYYQSQKEVDVLLCPECFHEGRFVTGHS-SLDYIRVD 393 (550)
Q Consensus 346 ~~C~~C~~~-~~~~~y~c~k~~d~~LC~~CF~~G~~~~~hs-s~DF~kvd 393 (550)
..|+.|+.. +...+|+|.+|.+++||..||..|++...|+ .|.|+++.
T Consensus 12 ~~Cd~C~~~pi~G~RykC~~C~d~DLC~~C~~~g~~~~~H~~~H~~~~~~ 61 (63)
T 2e5r_A 12 VECSYCHSESMMGFRYRCQQCHNYQLCQDCFWRGHAGGSHSNQHQMKEYT 61 (63)
T ss_dssp SCCSSSCCCSSCSCEEEESSCSSCEECHHHHHHCCCCSSSCTTCCEEEEC
T ss_pred CCCcCCCCcceecceEEecCCCCchhHHHHHhCCCcCCCCCCCCCEEEEe
Confidence 579999975 8899999999999999999999999999997 68888875
No 45
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=98.09 E-value=3.8e-06 Score=68.52 Aligned_cols=44 Identities=30% Similarity=0.467 Sum_probs=41.0
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCHHHHHHH-hCCCCHHHHHHHHhh
Q 008870 403 GETWSDQETFLLLEGIEMYNDNWNEIAEH-VSTKSKAQCILHFVR 446 (550)
Q Consensus 403 ~~~WT~eEel~LLEaIe~yg~nW~~IA~~-VgtKT~eECi~hFlq 446 (550)
...||++|..++++|+.+||-||..|+++ |++||..||+.+|..
T Consensus 8 ~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY~ 52 (70)
T 2crg_A 8 MEEWSASEACLFEEALEKYGKDFNDIRQDFLPWKSLTSIIEYYYM 52 (70)
T ss_dssp SCCCCHHHHHHHHHHHHHTCSCHHHHHHTTCSSSCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCccHHHHHHHHcCCCCHHHHHHHHHh
Confidence 36899999999999999999999999995 999999999999964
No 46
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=97.99 E-value=7e-06 Score=70.60 Aligned_cols=42 Identities=29% Similarity=0.470 Sum_probs=40.5
Q ss_pred CCCCHHHHHHHHHHHHHcCCCHHHHHHHhCCCCHHHHHHHHh
Q 008870 404 ETWSDQETFLLLEGIEMYNDNWNEIAEHVSTKSKAQCILHFV 445 (550)
Q Consensus 404 ~~WT~eEel~LLEaIe~yg~nW~~IA~~VgtKT~eECi~hFl 445 (550)
..||++|..++.+++..||.+|..|+++|++||..||+.+|.
T Consensus 44 ~~WT~eE~~~F~~~~~~~gK~F~~Ia~~l~~Kt~~~cV~~YY 85 (94)
T 4a69_C 44 NMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYYY 85 (94)
T ss_dssp CCCCHHHHHHHHHHHHHSTTCHHHHHHTCTTCCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHHHHHh
Confidence 579999999999999999999999999999999999999985
No 47
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=97.95 E-value=8.1e-07 Score=73.27 Aligned_cols=43 Identities=21% Similarity=0.492 Sum_probs=38.6
Q ss_pred CCCCCHHHHHHHHHHHHHcC----CCHHHHHHHhCCCCHHHHHHHHh
Q 008870 403 GETWSDQETFLLLEGIEMYN----DNWNEIAEHVSTKSKAQCILHFV 445 (550)
Q Consensus 403 ~~~WT~eEel~LLEaIe~yg----~nW~~IA~~VgtKT~eECi~hFl 445 (550)
...||.+|..+|..||.+|. +.|++||+.||+||++||+.||-
T Consensus 20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~VpGKT~eEVk~hY~ 66 (74)
T 4eef_G 20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKGRTPEEVKKHYE 66 (74)
T ss_dssp --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSCSSCHHHHHGGGC
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcCCCCHHHHHHHHH
Confidence 46899999999999999997 47999999999999999999983
No 48
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=97.91 E-value=1e-05 Score=64.83 Aligned_cols=46 Identities=17% Similarity=0.391 Sum_probs=41.2
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCCHHHHHH---HhCCCCHHHHHHHHhhC
Q 008870 402 DGETWSDQETFLLLEGIEMYNDNWNEIAE---HVSTKSKAQCILHFVRL 447 (550)
Q Consensus 402 ~~~~WT~eEel~LLEaIe~yg~nW~~IA~---~VgtKT~eECi~hFlqL 447 (550)
....||.+|+..||++|++||.+|.+|+. ++..||.-....+|-.|
T Consensus 7 ~r~~WT~EE~~~L~~gV~k~G~~W~~I~~~y~f~~~RT~VdLKdk~r~L 55 (62)
T 1x58_A 7 GRKDFTKEEVNYLFHGVKTMGNHWNSILWSFPFQKGRRAVDLAHKYHRL 55 (62)
T ss_dssp CSSSCCHHHHHHHHHHHHHHCSCHHHHHHHSCCCTTCCHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHhHhHHHHHHhCCCccCcccchHHHHHHHH
Confidence 46789999999999999999999999995 66689999999998765
No 49
>2dip_A Zinc finger SWIM domain-containing protein 2; ZZ domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.44.1.6
Probab=97.84 E-value=4.3e-06 Score=72.57 Aligned_cols=46 Identities=30% Similarity=0.585 Sum_probs=40.7
Q ss_pred CccCCCCCC-CCCcceeeccCCcCcccChhhhhcCCCCCCCCCCCceecCC
Q 008870 345 ENHCNYCSQ-PIPAVYYQSQKEVDVLLCPECFHEGRFVTGHSSLDYIRVDP 394 (550)
Q Consensus 345 ~~~C~~C~~-~~~~~~y~c~k~~d~~LC~~CF~~G~~~~~hss~DF~kvd~ 394 (550)
...|+.|+. ++...+|+|..|.+++||..||..|. |..|.|+++..
T Consensus 31 gv~Cd~C~~~pI~G~RykC~~C~d~DLC~~C~~~~~----H~~H~f~~i~~ 77 (98)
T 2dip_A 31 GIPCNNCKQFPIEGKCYKCTECIEYHLCQECFDSYC----HLSHTFTFREK 77 (98)
T ss_dssp CCCCSSSCCSSCCSCEEEESSSSSCEEEHHHHHTTS----GGGSCEEECCS
T ss_pred CCCCcCCCCCCcccCeEECCCCCCccHHHHHHccCC----CCCCCeeEecC
Confidence 368999996 68889999999999999999999984 67899998865
No 50
>2fc7_A ZZZ3 protein; structure genomics, ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.6
Probab=97.82 E-value=1.6e-05 Score=66.84 Aligned_cols=52 Identities=17% Similarity=0.275 Sum_probs=45.9
Q ss_pred CccCCCCCC-CCCcceeeccCCcC---cccChhhhhcCCCCCCCC-CCCceecCCCC
Q 008870 345 ENHCNYCSQ-PIPAVYYQSQKEVD---VLLCPECFHEGRFVTGHS-SLDYIRVDPAR 396 (550)
Q Consensus 345 ~~~C~~C~~-~~~~~~y~c~k~~d---~~LC~~CF~~G~~~~~hs-s~DF~kvd~~~ 396 (550)
.+.|+.|++ ++...+|+|..|.+ ++||..||..|++...|. .|.|+++....
T Consensus 21 ~~~Cd~C~~~pI~G~RykC~~C~d~~~yDLC~~C~~~g~~~~~H~~~H~~~~i~~~~ 77 (82)
T 2fc7_A 21 GFKCDNCGIEPIQGVRWHCQDCPPEMSLDFCDSCSDCLHETDIHKEDHQLEPIYRSS 77 (82)
T ss_dssp SCCCSSSCCSSEESCEEEESSSCSSSCCEEEGGGTTCCCCCSSCCSSSCEEEECSCC
T ss_pred cCCCCCCCCCcceeceEECCcCCCCcceecHHHHHhCccccCCCCCCCCEEEeeCCC
Confidence 468999996 68889999999999 999999999999988896 79999987543
No 51
>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A
Probab=97.56 E-value=6.8e-05 Score=86.15 Aligned_cols=87 Identities=20% Similarity=0.367 Sum_probs=72.9
Q ss_pred CCCCCCCCCCCHHHHhhcCcccCCCCCCCChHHHHHHHHHHHHHHHhCCCceEeHHHHh----ccCCCCCHHHHHHHHHH
Q 008870 186 HSDWFSPDTVHRLERQVVPHFFSGKSPDHTPEKYMECRNHIVAKYMDNPEKRLIVSDCQ----GLVDGVSPEDLTRIFRF 261 (550)
Q Consensus 186 ys~WF~~~~Ih~iEk~~lPEfF~g~~~~ktpe~Y~~~RN~iI~~yr~np~~yLT~t~~r----~~l~g~Dv~~i~RIh~F 261 (550)
|.+.|+.+.+|..|+.+||++-..- -....+|+.+||.|+..|+.||...|+...|. |.+.. |...|.+|++|
T Consensus 179 ~~~r~p~~~~~~~e~~~f~~~~~~~--~~~~~~~~~~rn~i~~~w~~~P~~a~~~~~~~~~~~r~~~~-~p~~i~~~~~~ 255 (852)
T 2xag_A 179 FQSRLPHDRMTSQEAACFPDIISGP--QQTQKVFLFIRNRTLQLWLDNPKIQLTFEATLQQLEAPYNS-DTVLVHRVHSY 255 (852)
T ss_dssp HTTTCCTTSCCHHHHHHCHHHHTSC--HHHHHHHHHHHHHHHHHHHTCTTBCCCHHHHHHHCCTTTTS-CHHHHHHHHHH
T ss_pred HHhcCCCcccChHHHHHHHHHHHhh--hhhcCeeeEeecchhHHHhcCCHHHhhHHHHHHhCCCcccC-CcHHHHHHHHH
Confidence 4678999999999999999986541 12467999999999999999999999987763 44444 88899999999
Q ss_pred hhhccccccccCCC
Q 008870 262 LNHWGIINYCAAVQ 275 (550)
Q Consensus 262 Le~wGlINy~~~p~ 275 (550)
|.+|++||+++...
T Consensus 256 ~~~~~~~~~~~~~~ 269 (852)
T 2xag_A 256 LERHGLINFGIYKR 269 (852)
T ss_dssp HHHTTSSSCSSCBC
T ss_pred HHHHHHHhcCcccc
Confidence 99999999987754
No 52
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=97.54 E-value=4.5e-05 Score=75.61 Aligned_cols=46 Identities=15% Similarity=0.282 Sum_probs=41.8
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCC------HHHHHHHhCCCCHHHHHHHHhhC
Q 008870 402 DGETWSDQETFLLLEGIEMYNDN------WNEIAEHVSTKSKAQCILHFVRL 447 (550)
Q Consensus 402 ~~~~WT~eEel~LLEaIe~yg~n------W~~IA~~VgtKT~eECi~hFlqL 447 (550)
....||.+|+.+||+.+++||.. |.+||++|.+||..+|+.||..+
T Consensus 7 ~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~LpGRT~nsIRnRw~~~ 58 (246)
T 1ign_A 7 NKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVY 58 (246)
T ss_dssp -CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcCCCCHHHHHHHHHHH
Confidence 35689999999999999999843 99999999999999999999874
No 53
>1tot_A CREB-binding protein; zinc binding, CBP, TAZ2, transferase; NMR {Mus musculus} SCOP: g.44.1.6
Probab=97.19 E-value=9.1e-05 Score=57.18 Aligned_cols=44 Identities=18% Similarity=0.437 Sum_probs=37.4
Q ss_pred CccCCCCCCCCCcceeeccCCcCcccChhhhhcCCCCCCCCCCCceecCC
Q 008870 345 ENHCNYCSQPIPAVYYQSQKEVDVLLCPECFHEGRFVTGHSSLDYIRVDP 394 (550)
Q Consensus 345 ~~~C~~C~~~~~~~~y~c~k~~d~~LC~~CF~~G~~~~~hss~DF~kvd~ 394 (550)
.+.|+.|++.+ ..+|+|..|.+++||..||..|. | .|.++++..
T Consensus 6 ~~~Cd~C~~~i-g~R~~C~~C~dyDLC~~C~~~~~----H-~H~m~~~~~ 49 (52)
T 1tot_A 6 VYTCNECKHHV-ETRWHCTVCEDYDLCINCYNTKS----H-THKMVKWGL 49 (52)
T ss_dssp CEEETTTTEEE-SSEEEESSSSSCEECHHHHHHHC----C-CSSEEEECS
T ss_pred EEECCCCCCCC-cceEEcCCCCCchhHHHHHhCCC----C-CCceEEecC
Confidence 36799999986 68999999999999999999975 5 588887753
No 54
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=96.49 E-value=0.0035 Score=53.95 Aligned_cols=44 Identities=14% Similarity=0.264 Sum_probs=41.0
Q ss_pred CCCCHHHHHHHHHHHHHcCCCHHHHHHHh-----CCCCHHHHHHHHhhC
Q 008870 404 ETWSDQETFLLLEGIEMYNDNWNEIAEHV-----STKSKAQCILHFVRL 447 (550)
Q Consensus 404 ~~WT~eEel~LLEaIe~yg~nW~~IA~~V-----gtKT~eECi~hFlqL 447 (550)
.+||.+|+..|++.+++|+-.|-.|+... +.||-++...+|-.+
T Consensus 31 ~~WTkEETd~Lf~L~~~fdlRW~vI~DRy~~~~~~~Rt~EdLK~RyY~v 79 (93)
T 3hm5_A 31 DAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHI 79 (93)
T ss_dssp TTBCHHHHHHHHHHHHHTTTCHHHHHHHSCTTTSCCCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCCCeeeehhhhccCCCCCCCHHHHHHHHHHH
Confidence 68999999999999999999999999999 479999999999764
No 55
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=96.33 E-value=0.002 Score=53.66 Aligned_cols=46 Identities=24% Similarity=0.393 Sum_probs=39.0
Q ss_pred CCCCCHHHHHHHHHHHHHcC----------CCHHHHHHHhC----CCCHHHHHHHHhhCC
Q 008870 403 GETWSDQETFLLLEGIEMYN----------DNWNEIAEHVS----TKSKAQCILHFVRLP 448 (550)
Q Consensus 403 ~~~WT~eEel~LLEaIe~yg----------~nW~~IA~~Vg----tKT~eECi~hFlqLP 448 (550)
...||.+|+++||++..... .-|+.||+.|. .||++||..+|-.|-
T Consensus 4 ~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~ 63 (86)
T 2ebi_A 4 AETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLL 63 (86)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 35799999999999996532 27999999986 699999999998873
No 56
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=96.14 E-value=0.007 Score=51.82 Aligned_cols=43 Identities=14% Similarity=0.322 Sum_probs=40.8
Q ss_pred CCCHHHHHHHHHHHHHcC---CCHHHHHHHhCCCCHHHHHHHHhhC
Q 008870 405 TWSDQETFLLLEGIEMYN---DNWNEIAEHVSTKSKAQCILHFVRL 447 (550)
Q Consensus 405 ~WT~eEel~LLEaIe~yg---~nW~~IA~~VgtKT~eECi~hFlqL 447 (550)
.||.+|+..+|.+-++-| .-|..||+.+|+||++|...||-+|
T Consensus 35 lWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~Nks~nqV~~RFq~L 80 (95)
T 1ug2_A 35 LWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFREL 80 (95)
T ss_dssp SSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHH
T ss_pred EeccccCHHHHHHHHhcCCChhHHHHHHHHHccCCHHHHHHHHHHH
Confidence 699999999999999987 5999999999999999999999886
No 57
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=95.92 E-value=0.0058 Score=48.15 Aligned_cols=43 Identities=9% Similarity=0.261 Sum_probs=39.6
Q ss_pred CCCCHHHHHHHHHHHHHc--------C-CCHHHHHH-HhCCCCHHHHHHHHhh
Q 008870 404 ETWSDQETFLLLEGIEMY--------N-DNWNEIAE-HVSTKSKAQCILHFVR 446 (550)
Q Consensus 404 ~~WT~eEel~LLEaIe~y--------g-~nW~~IA~-~VgtKT~eECi~hFlq 446 (550)
..||.+|+..|++-|..| | .-|+++++ .+..+|-+.|+.||++
T Consensus 3 ~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~HtwqSwRdRy~k 55 (59)
T 1fex_A 3 IAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLK 55 (59)
T ss_dssp CCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCCCCHHHHHHHHHH
Confidence 579999999999999999 4 46999999 8999999999999987
No 58
>2aqe_A Transcriptional adaptor 2, ADA2 alpha; helix-turn-helix; NMR {Mus musculus} SCOP: a.4.1.18 PDB: 2aqf_A
Probab=95.60 E-value=0.019 Score=48.79 Aligned_cols=70 Identities=16% Similarity=0.377 Sum_probs=58.9
Q ss_pred CCCCCCHHHHhhcCcccCCCCCCCChHHHHHHHHHHHHHHHhCCCceEeHHHHhccCCCCCHHHHHHHHHHhhhccccc
Q 008870 191 SPDTVHRLERQVVPHFFSGKSPDHTPEKYMECRNHIVAKYMDNPEKRLIVSDCQGLVDGVSPEDLTRIFRFLNHWGIIN 269 (550)
Q Consensus 191 ~~~~Ih~iEk~~lPEfF~g~~~~ktpe~Y~~~RN~iI~~yr~np~~yLT~t~~r~~l~g~Dv~~i~RIh~FLe~wGlIN 269 (550)
+.+-+|+-|++-+-.. .-.|..|+.+...||.-...+. .++.++||..+. +|++-..||+.||.+.|+|+
T Consensus 19 ~~~lLs~~E~~LC~~l------rL~P~~YL~~K~~li~E~~~~g--~l~k~da~~~~k-iD~~K~~~iydf~~~~Gwi~ 88 (90)
T 2aqe_A 19 GTEKLNEKEKELCQVV------RLVPGAYLEYKSALLNECHKQG--GLRLAQARALIK-IDVNKTRKIYDFLIREGYIT 88 (90)
T ss_dssp STTTSCHHHHHHHHHT------TCCHHHHHHHHHHHHHHHHHHS--CCCHHHHHTTSS-SSSHHHHHHHHHHHHTTSSC
T ss_pred CchhcCHHHHHHHHHh------CCCHHHHHHHHHHHHHHHHHcC--CCcHHHHHHHHc-ccHHHHHHHHHHHHHcCCCC
Confidence 4567899999977554 4579999999999999986543 389999998865 69999999999999999996
No 59
>2cuj_A Transcriptional adaptor 2-like; transcriptional regulation, nuclear protein, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.18
Probab=95.49 E-value=0.023 Score=50.03 Aligned_cols=70 Identities=16% Similarity=0.379 Sum_probs=59.5
Q ss_pred CCCCCCHHHHhhcCcccCCCCCCCChHHHHHHHHHHHHHHHhCCCceEeHHHHhccCCCCCHHHHHHHHHHhhhccccc
Q 008870 191 SPDTVHRLERQVVPHFFSGKSPDHTPEKYMECRNHIVAKYMDNPEKRLIVSDCQGLVDGVSPEDLTRIFRFLNHWGIIN 269 (550)
Q Consensus 191 ~~~~Ih~iEk~~lPEfF~g~~~~ktpe~Y~~~RN~iI~~yr~np~~yLT~t~~r~~l~g~Dv~~i~RIh~FLe~wGlIN 269 (550)
+.+-+|+-|++-+-.. .-.|..||.+...||.-...+ ..|+.++||..+. +|++-..||+.||.+.|+|+
T Consensus 37 g~~LLs~~E~~LCs~l------rL~P~~YL~iK~~Li~E~~k~--g~lkk~dA~~l~k-ID~~K~~rIydff~~~GWi~ 106 (108)
T 2cuj_A 37 GTEKLNEKEKELCQVV------RLVPGAYLEYKSALLNECHKQ--GGLRLAQARALIK-IDVNKTRKIYDFLIREGYIT 106 (108)
T ss_dssp TTTTSCHHHHHHHHHT------TCCHHHHHHHHHHHHHHHHHS--SCCCHHHHHHHHT-SCHHHHHHHHHHHHTTTSSC
T ss_pred CchhcCHHHHHHHHHh------CCCHHHHHHHHHHHHHHHHHc--CCCcHHHHHHHhc-ccHHHHHHHHHHHHHcCCCC
Confidence 4568899999977554 457999999999999998654 3499999998875 69999999999999999995
No 60
>2elj_A Transcriptional adapter 2; YDR448W, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Saccharomyces cerevisiae}
Probab=95.13 E-value=0.032 Score=47.25 Aligned_cols=70 Identities=17% Similarity=0.361 Sum_probs=59.0
Q ss_pred CCCCCCHHHHhhcCcccCCCCCCCChHHHHHHHHHHHHHHHhCCCceEeHHHHhccCCCCCHHHHHHHHHHhhhcccc
Q 008870 191 SPDTVHRLERQVVPHFFSGKSPDHTPEKYMECRNHIVAKYMDNPEKRLIVSDCQGLVDGVSPEDLTRIFRFLNHWGII 268 (550)
Q Consensus 191 ~~~~Ih~iEk~~lPEfF~g~~~~ktpe~Y~~~RN~iI~~yr~np~~yLT~t~~r~~l~g~Dv~~i~RIh~FLe~wGlI 268 (550)
+.+-+|+-|++-+-.. .-.|..|+.+.+.||.-+..+ ...++.++||..+. +|++-..||+.||.+.|+|
T Consensus 19 ~~~lLs~~E~~LC~~l------rL~P~~YL~~K~~Li~E~~k~-g~~lkk~da~~~~k-iD~~K~~~iydf~~~~Gwi 88 (88)
T 2elj_A 19 DYALLSNDEQQLCIQL------KILPKPYLVLKEVMFRELLKT-GGNLSKSACRELLN-IDPIKANRIYDFFQSQNWM 88 (88)
T ss_dssp TCSSSCHHHHHHHHHT------TCCHHHHHHHHHHHHHHHHHH-SSCCCHHHHHHHTT-SCHHHHHHHHHHHHHTTCC
T ss_pred CchhcCHHHHHHHHHh------CCCHHHHHHHHHHHHHHHHHh-CCCccHHHHHHHHc-ccHHHHHHHHHHHHHcCCC
Confidence 4567899999976544 457999999999999988654 45689999998865 6999999999999999987
No 61
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=95.08 E-value=0.016 Score=59.31 Aligned_cols=40 Identities=23% Similarity=0.431 Sum_probs=37.3
Q ss_pred CCCCHHHHHHHHHHHHHcC-CCHHHHHHHhCCCCHHHHHHH
Q 008870 404 ETWSDQETFLLLEGIEMYN-DNWNEIAEHVSTKSKAQCILH 443 (550)
Q Consensus 404 ~~WT~eEel~LLEaIe~yg-~nW~~IA~~VgtKT~eECi~h 443 (550)
..||..+-..++.|.++|| ++|..||..|++||++|...+
T Consensus 111 ~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~~Kt~eEV~~Y 151 (304)
T 1ofc_X 111 TAWTKRDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEVIEY 151 (304)
T ss_dssp TTCCHHHHHHHHHHHHHHCTTCHHHHTTSSTTCCHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHhCHHHHHHHHHHhcCCCHHHHHHH
Confidence 4799999999999999999 999999999999999998554
No 62
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=94.76 E-value=0.0052 Score=66.45 Aligned_cols=44 Identities=14% Similarity=0.360 Sum_probs=0.0
Q ss_pred CCCCHHHHHHHHHHHHHcCCCHHHHHHHhCCCCHHHHHHHHhhC
Q 008870 404 ETWSDQETFLLLEGIEMYNDNWNEIAEHVSTKSKAQCILHFVRL 447 (550)
Q Consensus 404 ~~WT~eEel~LLEaIe~yg~nW~~IA~~VgtKT~eECi~hFlqL 447 (550)
..||.+|..++.+++.+||.||..|+++|++||..+|+.+|...
T Consensus 190 d~WT~eE~~lFe~al~~yGKdF~~I~~~lp~Ksv~e~V~yYY~W 233 (482)
T 2xag_B 190 DEWTVEDKVLFEQAFSFHGKTFHRIQQMLPDKSIASLVKFYYSW 233 (482)
T ss_dssp --------------------------------------------
T ss_pred cccCHHHHHHHHHHHHHcCccHHHHHHHcCCCCHHHHHHHhccc
Confidence 47999999999999999999999999999999999999997654
No 63
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=93.39 E-value=0.0073 Score=49.13 Aligned_cols=43 Identities=16% Similarity=0.275 Sum_probs=39.6
Q ss_pred CCCCHHHHHHHHHHHHHcCC---CHHHHHHHhCCCCHHHHHHHHhhC
Q 008870 404 ETWSDQETFLLLEGIEMYND---NWNEIAEHVSTKSKAQCILHFVRL 447 (550)
Q Consensus 404 ~~WT~eEel~LLEaIe~yg~---nW~~IA~~VgtKT~eECi~hFlqL 447 (550)
-.||.+|+..+|...++-|- -|..||+.+ +||++|...||.+|
T Consensus 15 vlWTReeDR~IL~~cq~~G~s~~tfa~iA~~L-nks~~QV~~RF~~L 60 (70)
T 2lr8_A 15 ILWTRNDDRVILLECQKRGPSSKTFAYLAAKL-DKNPNQVSERFQQL 60 (70)
Confidence 36999999999999998884 899999999 79999999999986
No 64
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=94.14 E-value=0.075 Score=45.66 Aligned_cols=45 Identities=13% Similarity=0.262 Sum_probs=40.9
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCHHHHHHHhC-----CCCHHHHHHHHhhC
Q 008870 403 GETWSDQETFLLLEGIEMYNDNWNEIAEHVS-----TKSKAQCILHFVRL 447 (550)
Q Consensus 403 ~~~WT~eEel~LLEaIe~yg~nW~~IA~~Vg-----tKT~eECi~hFlqL 447 (550)
...||.+|+..|++.+++|+-.|--|+.... .||.++-..||.++
T Consensus 30 ~~~WT~eETd~LfdLc~~fdlRw~vI~DRy~~~~~~~RtvEdLK~RYY~V 79 (93)
T 4iej_A 30 DDAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHI 79 (93)
T ss_dssp BTTBCHHHHHHHHHHHHHTTTCHHHHHHHCCTTTSCCCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCCeEEEeeccccCCCCCCCHHHHHHHHHHH
Confidence 3689999999999999999999999999874 69999999999764
No 65
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=93.36 E-value=0.073 Score=53.71 Aligned_cols=31 Identities=26% Similarity=0.543 Sum_probs=27.7
Q ss_pred CCCCCCCHHHHHHHHHHHHHcC-CCHHHHHHH
Q 008870 401 IDGETWSDQETFLLLEGIEMYN-DNWNEIAEH 431 (550)
Q Consensus 401 ~~~~~WT~eEel~LLEaIe~yg-~nW~~IA~~ 431 (550)
.....|+.+|+..||-||.+|| |+|+.|-.-
T Consensus 166 ~W~c~W~~~dD~~LLvGIykyGyG~We~Ir~D 197 (270)
T 2xb0_X 166 NWSSNWTKEEDEKLLIGVFKYGYGSWTQIRDD 197 (270)
T ss_dssp TSSSCCCHHHHHHHHHHHHHHCTTCHHHHHHC
T ss_pred CCCCCcChHHHHHHHHHHHHHcCCcHHHHhcC
Confidence 3567899999999999999999 999999764
No 66
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=92.77 E-value=0.086 Score=50.16 Aligned_cols=29 Identities=28% Similarity=0.537 Sum_probs=26.3
Q ss_pred CCCCCHHHHHHHHHHHHHcC-CCHHHHHHH
Q 008870 403 GETWSDQETFLLLEGIEMYN-DNWNEIAEH 431 (550)
Q Consensus 403 ~~~WT~eEel~LLEaIe~yg-~nW~~IA~~ 431 (550)
...||.+|+..||-||.+|| |+|+.|-.-
T Consensus 134 ~~~W~~~~D~~LL~Gi~k~G~g~w~~Ir~D 163 (211)
T 4b4c_A 134 DIDWGKEDDSNLLIGIYEYGYGSWEMIKMD 163 (211)
T ss_dssp SSCCCHHHHHHHHHHHHHHCTTCHHHHHHC
T ss_pred CCCccHHHHHHHHHHHHHHCcCcHHHHHhC
Confidence 46799999999999999999 999988764
No 67
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=88.85 E-value=0.7 Score=37.08 Aligned_cols=44 Identities=9% Similarity=0.206 Sum_probs=38.0
Q ss_pred CCCCCHHHHHHHHHHHHHcCCC---HHHHHHHhC--CCCHHHHHHHHhh
Q 008870 403 GETWSDQETFLLLEGIEMYNDN---WNEIAEHVS--TKSKAQCILHFVR 446 (550)
Q Consensus 403 ~~~WT~eEel~LLEaIe~yg~n---W~~IA~~Vg--tKT~eECi~hFlq 446 (550)
.-.||.+.-..+++||++.|.+ |..|-+.|+ +-|.+++..|.-.
T Consensus 7 r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQK 55 (64)
T 1irz_A 7 RVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQK 55 (64)
T ss_dssp SCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHH
T ss_pred CCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHH
Confidence 4579999999999999999955 899999998 4699999888654
No 68
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=88.68 E-value=0.45 Score=45.13 Aligned_cols=39 Identities=18% Similarity=0.284 Sum_probs=34.5
Q ss_pred CCCCHHHHHHHHHHHHHcC---CCHHHHHHHhC--CCCHHHHHH
Q 008870 404 ETWSDQETFLLLEGIEMYN---DNWNEIAEHVS--TKSKAQCIL 442 (550)
Q Consensus 404 ~~WT~eEel~LLEaIe~yg---~nW~~IA~~Vg--tKT~eECi~ 442 (550)
..||..|...|+.|+.+|| +.|+.|++... .||.++...
T Consensus 8 ~~~t~~E~r~fira~~kfG~~~~r~~~I~~da~L~~Ks~~~v~~ 51 (211)
T 4b4c_A 8 KGFSDAEIRRFIKSYKKFGGPLERLDAIARDAELVDKSETDLRR 51 (211)
T ss_dssp CCSCHHHHHHHHHHHTTCSSGGGCHHHHHHHTTCTTSCHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCchhHHHHHHHHhccCCCCHHHHHH
Confidence 5799999999999999999 78999999854 799887665
No 69
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=85.07 E-value=0.7 Score=47.33 Aligned_cols=47 Identities=11% Similarity=0.229 Sum_probs=39.8
Q ss_pred CCCCCCHHHHHHHHHHHHHcC----CCHHHHHH------------HhCCCCHHHHHHHHhhCC
Q 008870 402 DGETWSDQETFLLLEGIEMYN----DNWNEIAE------------HVSTKSKAQCILHFVRLP 448 (550)
Q Consensus 402 ~~~~WT~eEel~LLEaIe~yg----~nW~~IA~------------~VgtKT~eECi~hFlqLP 448 (550)
.+..||.+|+..||-+|.+|| |+|++|.. ++-+||+.|+..|...|.
T Consensus 211 k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwf~kSRTp~el~rRc~tLi 273 (304)
T 1ofc_X 211 KGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRRCNTLI 273 (304)
T ss_dssp CCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHHHHHHH
T ss_pred CCCccCHHHHHHHHHHHHHhcCCCcchHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHHHHHH
Confidence 356899999999999999998 79999983 556899999888866653
No 70
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=82.59 E-value=1.1 Score=47.19 Aligned_cols=43 Identities=14% Similarity=0.272 Sum_probs=38.2
Q ss_pred CCCCHHHHHHHHHHHHHcC-CCHHHHHHHhC-CCCHHHHHHHHhhC
Q 008870 404 ETWSDQETFLLLEGIEMYN-DNWNEIAEHVS-TKSKAQCILHFVRL 447 (550)
Q Consensus 404 ~~WT~eEel~LLEaIe~yg-~nW~~IA~~Vg-tKT~eECi~hFlqL 447 (550)
..||..+-..++.|.++|| ++-..||..|+ +||++|.. .|.+.
T Consensus 124 ~~WnrrDF~~FI~a~~kyGR~d~~~IA~ev~~~Kt~eEV~-~Y~~v 168 (374)
T 2y9y_A 124 TNWNKLEFRKFITVSGKYGRNSIQAIARELAPGKTLEEVR-AYAKA 168 (374)
T ss_dssp CCSCHHHHHHHHHHHHHHCTTCHHHHHSSCCCSSSHHHHH-HHHHH
T ss_pred cccCHHHHHHHHHHHHHhCHhHHHHHHHHHccCCCHHHHH-HHHHH
Confidence 4799999999999999999 99999999998 99999987 44443
No 71
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=63.37 E-value=7.4 Score=40.87 Aligned_cols=45 Identities=16% Similarity=0.251 Sum_probs=38.6
Q ss_pred CCCCCHHHHHHHHHHHHHcC----CCHHHHHHHh------------CCCCHHHHHHHHhhC
Q 008870 403 GETWSDQETFLLLEGIEMYN----DNWNEIAEHV------------STKSKAQCILHFVRL 447 (550)
Q Consensus 403 ~~~WT~eEel~LLEaIe~yg----~nW~~IA~~V------------gtKT~eECi~hFlqL 447 (550)
+..||.+|+..||-+|.+|| |+|++|-..| .+||+.++..|...|
T Consensus 228 ~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwF~kSRT~~EL~rRc~tL 288 (374)
T 2y9y_A 228 KRTYSEEEDRFILLMLFKYGLDRDDVYELVRDEIRDCPLFELDFYFRSRTPVELARRGNTL 288 (374)
T ss_dssp CCCSCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHCSGGGSCHHHHTCCHHHHHHHHHHH
T ss_pred CCccCHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHHHHH
Confidence 56899999999999999998 7899997764 479999988886665
No 72
>3ny3_A E3 ubiquitin-protein ligase UBR2; zinc finger-like, ubiquitin ligase, protein binding, lygase,; 1.60A {Homo sapiens} PDB: 3ny2_A 3ny1_A
Probab=60.47 E-value=4.8 Score=33.02 Aligned_cols=39 Identities=23% Similarity=0.442 Sum_probs=26.7
Q ss_pred CCCCCC--cceeeccCC---cCcccChhhhhcCCCCCCCCCCCceecC
Q 008870 351 CSQPIP--AVYYQSQKE---VDVLLCPECFHEGRFVTGHSSLDYIRVD 393 (550)
Q Consensus 351 C~~~~~--~~~y~c~k~---~d~~LC~~CF~~G~~~~~hss~DF~kvd 393 (550)
|+.... .+.|+|..| ....||.+||..+ .|..|+|.+..
T Consensus 7 Cg~vf~~ge~~Y~C~~C~~d~tc~lC~~CF~~~----~H~gH~~~~~~ 50 (75)
T 3ny3_A 7 CGRVFKVGEPTYSCRDCAVDPTCVLCMECFLGS----IHRDHRYRMTT 50 (75)
T ss_dssp CCCBCCTTCEEEEETTTBSSTTCCBCHHHHHTS----GGGGSCEEEEE
T ss_pred cCCcccCCCEEEECccCCCCCCeeEChHHCCCC----CcCCceEEEEE
Confidence 444443 356777665 3467999999876 47788888754
No 73
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=59.67 E-value=11 Score=30.46 Aligned_cols=46 Identities=20% Similarity=0.339 Sum_probs=32.8
Q ss_pred ccCCCCCCCCCcceeeccCCcCcccChhhhhcCCCCCCCCCCCceecCC
Q 008870 346 NHCNYCSQPIPAVYYQSQKEVDVLLCPECFHEGRFVTGHSSLDYIRVDP 394 (550)
Q Consensus 346 ~~C~~C~~~~~~~~y~c~k~~d~~LC~~CF~~G~~~~~hss~DF~kvd~ 394 (550)
.-|..|..+. .++|..|.+-.-|..||.+++.--....|..++...
T Consensus 9 pWC~ICneDA---tlrC~gCdgDLYC~rC~rE~H~~~d~r~Hk~v~y~~ 54 (67)
T 2d8v_A 9 PWCCICNEDA---TLRCAGCDGDLYCARCFREGHDNFDLKEHQTSPYHP 54 (67)
T ss_dssp SSCTTTCSCC---CEEETTTTSEEECSSHHHHHTTTSSTTTCCEECCCC
T ss_pred CeeEEeCCCC---eEEecCCCCceehHHHHHHHccchhhhccceeeccC
Confidence 5799998874 489999977789999999988543334455444433
No 74
>3nis_A E3 ubiquitin-protein ligase UBR1; E3 ubiquitin ligase, UBR BOX, zinc-binding protein, N-END RU ligase, metal binding protein; 1.68A {Saccharomyces cerevisiae} PDB: 3nii_A 3nij_A 3nih_A 3nik_A 3nim_A 3nin_A 3nil_A 3nit_A
Probab=56.88 E-value=6.4 Score=32.87 Aligned_cols=40 Identities=18% Similarity=0.372 Sum_probs=27.9
Q ss_pred CCCCCCC--cceeeccCC---cCcccChhhhhcCCCCCCCCCCCceecC
Q 008870 350 YCSQPIP--AVYYQSQKE---VDVLLCPECFHEGRFVTGHSSLDYIRVD 393 (550)
Q Consensus 350 ~C~~~~~--~~~y~c~k~---~d~~LC~~CF~~G~~~~~hss~DF~kvd 393 (550)
.|+.... .+.|+|..| ....||.+||..+ .|..|+|....
T Consensus 10 ~Cg~vf~~ge~~Y~C~~C~~d~tcvlC~~CF~~s----~H~gH~~~~~~ 54 (82)
T 3nis_A 10 NCGRKFKIGEPLYRCHECGCDDTCVLCIHCFNPK----DHVNHHVCTDI 54 (82)
T ss_dssp CCCCBCCTTCEEEEETTTBSSTTCCBCTTTCCGG----GGTTSCEEEEE
T ss_pred CCCCcccCCCEEEEeeccCCCCCceEchhhCCCC----CcCCceEEEEE
Confidence 3555554 357777766 3467999999875 57889998754
No 75
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=54.76 E-value=11 Score=29.45 Aligned_cols=54 Identities=9% Similarity=0.030 Sum_probs=40.5
Q ss_pred ChHHHHHHHHHHHHHHHhCCCceEeHHHHhccCCCCCHHHHHHHHHHhhhcccccc
Q 008870 215 TPEKYMECRNHIVAKYMDNPEKRLIVSDCQGLVDGVSPEDLTRIFRFLNHWGIINY 270 (550)
Q Consensus 215 tpe~Y~~~RN~iI~~yr~np~~yLT~t~~r~~l~g~Dv~~i~RIh~FLe~wGlINy 270 (550)
.|+.-.+.|..|++....+ ..++|.++.-+.+ |+.-..+.|+..=|+..|+|-.
T Consensus 4 ~~~~m~~~~~~IL~~L~~~-~~~~s~~eLA~~l-glsr~tv~~~l~~L~~~G~I~~ 57 (67)
T 2heo_A 4 MLSTGDNLEQKILQVLSDD-GGPVAIFQLVKKC-QVPKKTLNQVLYRLKKEDRVSS 57 (67)
T ss_dssp -----CHHHHHHHHHHHHH-CSCEEHHHHHHHH-CSCHHHHHHHHHHHHHTTSEEE
T ss_pred CcccccHHHHHHHHHHHHc-CCCcCHHHHHHHH-CcCHHHHHHHHHHHHHCCcEec
Confidence 3444445788999988765 3579999977665 6789999999999999999853
No 76
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=49.69 E-value=8.5 Score=30.47 Aligned_cols=50 Identities=12% Similarity=0.191 Sum_probs=37.6
Q ss_pred HHHHHHHHHHhCCCceEeHHHHhccC----CCCCHHHHHHHHHHhhhccccccc
Q 008870 222 CRNHIVAKYMDNPEKRLIVSDCQGLV----DGVSPEDLTRIFRFLNHWGIINYC 271 (550)
Q Consensus 222 ~RN~iI~~yr~np~~yLT~t~~r~~l----~g~Dv~~i~RIh~FLe~wGlINy~ 271 (550)
-|-.|++.....+...+|+.+.-..+ .+++...|.|....|+..|+|.-.
T Consensus 18 ~r~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Glv~~~ 71 (83)
T 2fu4_A 18 PRLKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIVTRH 71 (83)
T ss_dssp HHHHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCeEEE
Confidence 34567776654432679999975555 357899999999999999999754
No 77
>1v5n_A PDI-like hypothetical protein AT1G60420; DC1 domain, zinc binding domain, PDI-like protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.49.1.3
Probab=48.57 E-value=11 Score=31.56 Aligned_cols=32 Identities=19% Similarity=0.341 Sum_probs=27.5
Q ss_pred CccCCCCCCCCCcceeeccCCcCcccChhhhhc
Q 008870 345 ENHCNYCSQPIPAVYYQSQKEVDVLLCPECFHE 377 (550)
Q Consensus 345 ~~~C~~C~~~~~~~~y~c~k~~d~~LC~~CF~~ 377 (550)
.+.|+.|+.......|+|..| +|.|-..|...
T Consensus 47 ~~~C~~C~~~~~~~~Y~C~~C-~f~lH~~Ca~~ 78 (89)
T 1v5n_A 47 VYTCDKCEEEGTIWSYHCDEC-DFDLHAKCALN 78 (89)
T ss_dssp SCCCTTTSCCCCSCEEECTTT-CCCCCHHHHHC
T ss_pred CeEeCCCCCcCCCcEEEcCCC-CCeEcHHhcCC
Confidence 368999999988889999998 79999999753
No 78
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=48.56 E-value=15 Score=32.14 Aligned_cols=50 Identities=12% Similarity=0.179 Sum_probs=38.8
Q ss_pred HHHHHHHHHHhCCCceEeHHHHhccC----CCCCHHHHHHHHHHhhhccccccc
Q 008870 222 CRNHIVAKYMDNPEKRLIVSDCQGLV----DGVSPEDLTRIFRFLNHWGIINYC 271 (550)
Q Consensus 222 ~RN~iI~~yr~np~~yLT~t~~r~~l----~g~Dv~~i~RIh~FLe~wGlINy~ 271 (550)
-|-.|++....++...+|+.+.-..| .+++...|.|...+|+..|||.--
T Consensus 19 qR~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~~ 72 (136)
T 1mzb_A 19 PRVKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLVVRH 72 (136)
T ss_dssp HHHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcEEEE
Confidence 46678887766543789999975554 348999999999999999999743
No 79
>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus} PDB: 4fth_A
Probab=46.18 E-value=18 Score=27.68 Aligned_cols=27 Identities=19% Similarity=0.361 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHcCCCHHHHHHHhCC
Q 008870 408 DQETFLLLEGIEMYNDNWNEIAEHVST 434 (550)
Q Consensus 408 ~eEel~LLEaIe~yg~nW~~IA~~Vgt 434 (550)
.-|...|.++++.++||+.++|+.+|-
T Consensus 18 ~~E~~~i~~aL~~~~gn~~~aA~~LGi 44 (63)
T 3e7l_A 18 EFEKIFIEEKLREYDYDLKRTAEEIGI 44 (63)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHCc
Confidence 457788999999999999999999994
No 80
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=45.54 E-value=29 Score=34.49 Aligned_cols=24 Identities=13% Similarity=0.203 Sum_probs=22.3
Q ss_pred CHHHHHHHhCCCCHHHHHHHHhhC
Q 008870 424 NWNEIAEHVSTKSKAQCILHFVRL 447 (550)
Q Consensus 424 nW~~IA~~VgtKT~eECi~hFlqL 447 (550)
-|.+||++..++|....+.+|..+
T Consensus 173 ~fk~ia~~~P~HT~~SWRdRyrKf 196 (246)
T 1ign_A 173 FFKHFAEEHAAHTENAWRDRFRKF 196 (246)
T ss_dssp HHHHHHHHTTTSCHHHHHHHHHHT
T ss_pred HHHHHHHHCCCCChhhHHHHHHHH
Confidence 699999999999999999999865
No 81
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=44.58 E-value=34 Score=29.70 Aligned_cols=53 Identities=8% Similarity=0.098 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHHhCCCceEeHHHHhccC----CCCCHHHHHHHHHHhhhccccccc
Q 008870 218 KYMECRNHIVAKYMDNPEKRLIVSDCQGLV----DGVSPEDLTRIFRFLNHWGIINYC 271 (550)
Q Consensus 218 ~Y~~~RN~iI~~yr~np~~yLT~t~~r~~l----~g~Dv~~i~RIh~FLe~wGlINy~ 271 (550)
+.-.-|-.|++..... ...+|+.+.-..| .+++...+.|...+|+..|||.--
T Consensus 8 r~T~qR~~Il~~l~~~-~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv~~~ 64 (131)
T 2o03_A 8 RSTRQRAAISTLLETL-DDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGLVDTL 64 (131)
T ss_dssp HHHHHHHHHHHHHHHC-CSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTSEEEE
T ss_pred CCCHHHHHHHHHHHhC-CCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCEEEE
Confidence 4455688888888764 5789999975554 458999999999999999999754
No 82
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=43.91 E-value=16 Score=32.78 Aligned_cols=50 Identities=10% Similarity=0.155 Sum_probs=38.6
Q ss_pred HHHHHHHHHHhCCCceEeHHHHhccC----CCCCHHHHHHHHHHhhhccccccc
Q 008870 222 CRNHIVAKYMDNPEKRLIVSDCQGLV----DGVSPEDLTRIFRFLNHWGIINYC 271 (550)
Q Consensus 222 ~RN~iI~~yr~np~~yLT~t~~r~~l----~g~Dv~~i~RIh~FLe~wGlINy~ 271 (550)
-|-.|++....++...+|+.+.-..| .+++...|.|...+|+..|||.--
T Consensus 18 qR~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~~ 71 (150)
T 2w57_A 18 PRLKILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIVTRH 71 (150)
T ss_dssp HHHHHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcEEEE
Confidence 46677777765432689999975554 358999999999999999999743
No 83
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=40.55 E-value=26 Score=31.37 Aligned_cols=50 Identities=18% Similarity=0.247 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHhCCCceEeHHHHhccC----CCCCHHHHHHHHHHhhhccccccc
Q 008870 221 ECRNHIVAKYMDNPEKRLIVSDCQGLV----DGVSPEDLTRIFRFLNHWGIINYC 271 (550)
Q Consensus 221 ~~RN~iI~~yr~np~~yLT~t~~r~~l----~g~Dv~~i~RIh~FLe~wGlINy~ 271 (550)
.-|-.|++....+ ...+|+.+.-..| .+++...|.|...+|+..|||.--
T Consensus 27 ~qR~~IL~~l~~~-~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~~ 80 (150)
T 2xig_A 27 KQREEVVSVLYRS-GTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFISVL 80 (150)
T ss_dssp HHHHHHHHHHHHC-SSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHhC-CCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcEEEE
Confidence 3577888888776 4589999975554 358999999999999999999753
No 84
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=38.36 E-value=24 Score=27.82 Aligned_cols=46 Identities=11% Similarity=0.117 Sum_probs=37.3
Q ss_pred HHHHHHHHHhCCCceEeHHHHhccCCCCCHHHHHHHHHHhhhccccccc
Q 008870 223 RNHIVAKYMDNPEKRLIVSDCQGLVDGVSPEDLTRIFRFLNHWGIINYC 271 (550)
Q Consensus 223 RN~iI~~yr~np~~yLT~t~~r~~l~g~Dv~~i~RIh~FLe~wGlINy~ 271 (550)
|..|+.....++ .+|..+.-+.+ |+....+.|....|+..|+|-..
T Consensus 2 r~~Il~~L~~~~--~~s~~eLa~~l-gvs~~tv~r~L~~L~~~GlI~~~ 47 (81)
T 2htj_A 2 KNEILEFLNRHN--GGKTAEIAEAL-AVTDYQARYYLLLLEKAGMVQRS 47 (81)
T ss_dssp HHHHHHHHHHSC--CCCHHHHHHHH-TSCHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHHcC--CCCHHHHHHHH-CcCHHHHHHHHHHHHHCCCEEEe
Confidence 677887776653 48999877665 67889999999999999999754
No 85
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=36.93 E-value=20 Score=30.55 Aligned_cols=31 Identities=16% Similarity=0.588 Sum_probs=24.8
Q ss_pred CccCCCCCCCCC-----cceeeccCCcCcccChhhhh
Q 008870 345 ENHCNYCSQPIP-----AVYYQSQKEVDVLLCPECFH 376 (550)
Q Consensus 345 ~~~C~~C~~~~~-----~~~y~c~k~~d~~LC~~CF~ 376 (550)
...|..|+.++. .+++.|.+| .|-+|..||.
T Consensus 16 ~qiCqiCGD~VG~~~~Ge~FVAC~eC-~FPvCrpCyE 51 (93)
T 1weo_A 16 GQFCEICGDQIGLTVEGDLFVACNEC-GFPACRPCYE 51 (93)
T ss_dssp SCBCSSSCCBCCBCSSSSBCCSCSSS-CCCCCHHHHH
T ss_pred CCccccccCccccCCCCCEEEeeecc-CChhhHHHHH
Confidence 357999998865 378889988 5889999994
No 86
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=34.27 E-value=55 Score=28.82 Aligned_cols=53 Identities=13% Similarity=0.155 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHhCCCceEeHHHHhccC----CCCCHHHHHHHHHHhhhccccccc
Q 008870 218 KYMECRNHIVAKYMDNPEKRLIVSDCQGLV----DGVSPEDLTRIFRFLNHWGIINYC 271 (550)
Q Consensus 218 ~Y~~~RN~iI~~yr~np~~yLT~t~~r~~l----~g~Dv~~i~RIh~FLe~wGlINy~ 271 (550)
+.-.-|-.|++....++ ..+|+.+....| .+++...|.|...+|..-|||.--
T Consensus 11 r~T~qR~~Il~~L~~~~-~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~~ 67 (139)
T 3mwm_A 11 RATRQRAAVSAALQEVE-EFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGEVDVL 67 (139)
T ss_dssp HHHHHHHHHHHHHTTCS-SCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSSEEE
T ss_pred ccCHHHHHHHHHHHhCC-CCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCCEEEE
Confidence 44567888998776654 699999975554 348999999999999999999643
No 87
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=34.13 E-value=36 Score=30.13 Aligned_cols=49 Identities=12% Similarity=0.157 Sum_probs=38.3
Q ss_pred HHHHHHHHHHhCCCceEeHHHHhccC----CCCCHHHHHHHHHHhhhccccccc
Q 008870 222 CRNHIVAKYMDNPEKRLIVSDCQGLV----DGVSPEDLTRIFRFLNHWGIINYC 271 (550)
Q Consensus 222 ~RN~iI~~yr~np~~yLT~t~~r~~l----~g~Dv~~i~RIh~FLe~wGlINy~ 271 (550)
-|-.|++..... ...+|+.+.-..| .+++...|.|...+|...|||.--
T Consensus 23 qR~~Il~~L~~~-~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~~ 75 (145)
T 2fe3_A 23 QRHAILEYLVNS-MAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLVKEL 75 (145)
T ss_dssp HHHHHHHHHHHC-SSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHhC-CCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCEEEE
Confidence 456777777654 5689999975444 358899999999999999999754
No 88
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=31.70 E-value=56 Score=32.76 Aligned_cols=36 Identities=17% Similarity=0.192 Sum_probs=29.9
Q ss_pred CCCCHHHHHHHHHHHHHcC---CCHHHHHHHh--CCCCHHH
Q 008870 404 ETWSDQETFLLLEGIEMYN---DNWNEIAEHV--STKSKAQ 439 (550)
Q Consensus 404 ~~WT~eEel~LLEaIe~yg---~nW~~IA~~V--gtKT~eE 439 (550)
..||+.|...|+.++.+|| +.|+.|+.-- ..|+.+.
T Consensus 4 ~~ltekEiR~l~Ra~~kfG~~~~R~e~I~~dA~L~~ks~~~ 44 (270)
T 2xb0_X 4 GSIGESEVRALYKAILKFGNLKEILDELIADGTLPVKSFEK 44 (270)
T ss_dssp CCCCHHHHHHHHHHHHHHSSCTTCHHHHHHTTSSCCCCHHH
T ss_pred CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCCHHH
Confidence 5799999999999999999 6899998763 2577543
No 89
>4ham_A LMO2241 protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, winged helix-turn-helix, four helix bundle; 1.91A {Listeria monocytogenes}
Probab=31.42 E-value=63 Score=28.01 Aligned_cols=57 Identities=12% Similarity=0.307 Sum_probs=42.3
Q ss_pred CCCh---HHHHHHHHHHHHHHHhCCCceE-eHHHHhccCCCCCHHHHHHHHHHhhhccccccc
Q 008870 213 DHTP---EKYMECRNHIVAKYMDNPEKRL-IVSDCQGLVDGVSPEDLTRIFRFLNHWGIINYC 271 (550)
Q Consensus 213 ~ktp---e~Y~~~RN~iI~~yr~np~~yL-T~t~~r~~l~g~Dv~~i~RIh~FLe~wGlINy~ 271 (550)
+++| ++|-.||+.|++-- ..|...| |..+.-..+ |+-...+.+.+.-|+.-|||-..
T Consensus 11 s~~PlY~QI~~~i~~~I~~G~-l~pG~~LPser~La~~~-gVSr~tVReAl~~L~~eGlv~~~ 71 (134)
T 4ham_A 11 SQLPIYEQIVQKIKEQVVKGV-LQEGEKILSIREFASRI-GVNPNTVSKAYQELERQEVIITV 71 (134)
T ss_dssp SSSCHHHHHHHHHHHHHHHTS-SCTTCEECCHHHHHHHH-TCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCCHHHHHHHHHHHHHHcCC-CCCCCCCccHHHHHHHH-CCCHHHHHHHHHHHHHCCcEEEE
Confidence 4555 55666666666543 5789999 776654444 67889999999999999999875
No 90
>3tqn_A Transcriptional regulator, GNTR family; regulatory functions; 2.80A {Coxiella burnetii}
Probab=29.63 E-value=53 Score=27.71 Aligned_cols=55 Identities=7% Similarity=0.024 Sum_probs=41.7
Q ss_pred ChHHHHHHHHHHHHHHHhCCCceE-eHHHHhccCCCCCHHHHHHHHHHhhhccccccc
Q 008870 215 TPEKYMECRNHIVAKYMDNPEKRL-IVSDCQGLVDGVSPEDLTRIFRFLNHWGIINYC 271 (550)
Q Consensus 215 tpe~Y~~~RN~iI~~yr~np~~yL-T~t~~r~~l~g~Dv~~i~RIh~FLe~wGlINy~ 271 (550)
.-++|-.||..|++-- ..|...| |..+.-..+ |+--..+.+.+.-|+..|+|-..
T Consensus 11 ~~~i~~~i~~~I~~g~-~~~G~~lPs~~~La~~~-~vSr~tvr~al~~L~~~Gli~~~ 66 (113)
T 3tqn_A 11 YQQLRDKIVEAIIDGS-YVEGEMIPSIRKISTEY-QINPLTVSKAYQSLLDDNVIEKR 66 (113)
T ss_dssp HHHHHHHHHHHHHHTS-SCTTCEECCHHHHHHHH-TCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHHHcCC-CCCCCcCcCHHHHHHHH-CcCHHHHHHHHHHHHHCCCEEEe
Confidence 3466777777776633 4688899 787765554 57889999999999999999764
No 91
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=29.35 E-value=29 Score=30.83 Aligned_cols=48 Identities=17% Similarity=0.266 Sum_probs=36.2
Q ss_pred HHHHHHHHHHhCCCceEeHHHHhccC----CCCCHHHHHHHHHHhhhccccccc
Q 008870 222 CRNHIVAKYMDNPEKRLIVSDCQGLV----DGVSPEDLTRIFRFLNHWGIINYC 271 (550)
Q Consensus 222 ~RN~iI~~yr~np~~yLT~t~~r~~l----~g~Dv~~i~RIh~FLe~wGlINy~ 271 (550)
-|..|++....++ .+|+.+.-..| .+++...|.|...+|..-|||.--
T Consensus 20 qR~~Il~~l~~~~--h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv~~i 71 (145)
T 3eyy_A 20 QRQLVLEAVDTLE--HATPDDILGEVRKTASGINISTVYRTLELLEELGLVSHA 71 (145)
T ss_dssp HHHHHHHHHHHHS--SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHHhcC--CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCcEEEE
Confidence 4566777666654 78988864333 348999999999999999999643
No 92
>2olm_A Nucleoporin-like protein RIP; arfgap, GTPase-activating protein, REV-interacting protein, human immunodeficiency virus, AIDS, structural genomics; 1.48A {Homo sapiens} PDB: 2d9l_A
Probab=27.94 E-value=77 Score=28.68 Aligned_cols=57 Identities=21% Similarity=0.328 Sum_probs=33.9
Q ss_pred CccCCCCCCCCCcceeeccCCcCcccChhhhhcCCCCCCCCCCCceecCCCCCCCCCCCCCCCHHHHHHHH
Q 008870 345 ENHCNYCSQPIPAVYYQSQKEVDVLLCPECFHEGRFVTGHSSLDYIRVDPAREYGDIDGETWSDQETFLLL 415 (550)
Q Consensus 345 ~~~C~~C~~~~~~~~y~c~k~~d~~LC~~CF~~G~~~~~hss~DF~kvd~~~~~~~~~~~~WT~eEel~LL 415 (550)
...|.-|+.. ...+-+.. ..+.+|.+|-.--+..+.| .+++-- .-+.||.+|...|.
T Consensus 25 N~~CaDCg~~--~P~WaS~n-~GvfiC~~CsgiHR~LG~~---s~VrSl--------~ld~w~~~~l~~m~ 81 (140)
T 2olm_A 25 NRKCFDCDQR--GPTYVNMT-VGSFVCTSCSGSLRGLNPP---HRVKSI--------SMTTFTQQEIEFLQ 81 (140)
T ss_dssp GGSCTTTCSS--CCCEEETT-TTEEECHHHHHHHTTSSSC---CCEEET--------TTCCCCHHHHHHHH
T ss_pred CCcCCCCCCC--CCCceeec-cCEEEchhccchhccCCCc---ceeeec--------CCCCCCHHHHHHHH
Confidence 4579989864 33344333 4688999998755543333 344421 12469998765554
No 93
>3by6_A Predicted transcriptional regulator; structural genomics, PSI-2, MCSG, structure initiative, midwest center for structural genomic binding; 2.20A {Oenococcus oeni}
Probab=27.47 E-value=50 Score=28.64 Aligned_cols=55 Identities=11% Similarity=0.151 Sum_probs=42.4
Q ss_pred ChHHHHHHHHHHHHHHHhCCCceE-eHHHHhccCCCCCHHHHHHHHHHhhhccccccc
Q 008870 215 TPEKYMECRNHIVAKYMDNPEKRL-IVSDCQGLVDGVSPEDLTRIFRFLNHWGIINYC 271 (550)
Q Consensus 215 tpe~Y~~~RN~iI~~yr~np~~yL-T~t~~r~~l~g~Dv~~i~RIh~FLe~wGlINy~ 271 (550)
.-.+|-.||+.|+.-- ..|...| +..+.-..+ |+--..+.+.+.-|+..|||-..
T Consensus 13 ~~~i~~~l~~~I~~g~-~~~G~~lPse~~La~~~-~vSr~tvr~Al~~L~~~Gli~~~ 68 (126)
T 3by6_A 13 YLQLVDRIKNEVATDV-LSANDQLPSVRETALQE-KINPNTVAKAYKELEAQKVIRTI 68 (126)
T ss_dssp HHHHHHHHHHHHHTTS-SCTTCEECCHHHHHHHH-TCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHHHhCC-CCCCCcCcCHHHHHHHH-CcCHHHHHHHHHHHHHCCCEEEe
Confidence 3467777777777643 4688899 888866555 57889999999999999999654
No 94
>1umq_A Photosynthetic apparatus regulatory protein; DNA-binding protein, response regulator, DNA binding domain, helix-turn-helix; NMR {Rhodobacter sphaeroides} SCOP: a.4.1.12
Probab=26.59 E-value=54 Score=26.89 Aligned_cols=30 Identities=17% Similarity=0.047 Sum_probs=25.5
Q ss_pred CCCHHHHHHHHHHHHHcCCCHHHHHHHhCC
Q 008870 405 TWSDQETFLLLEGIEMYNDNWNEIAEHVST 434 (550)
Q Consensus 405 ~WT~eEel~LLEaIe~yg~nW~~IA~~Vgt 434 (550)
.+..-|...|.++++.++||..+.|+.+|-
T Consensus 37 ~l~~~Er~~I~~aL~~~~GN~s~AA~~LGI 66 (81)
T 1umq_A 37 SADRVRWEHIQRIYEMCDRNVSETARRLNM 66 (81)
T ss_dssp CHHHHHHHHHHHHHHHTTSCHHHHHHHHTS
T ss_pred hHHHHHHHHHHHHHHHhCCCHHHHHHHhCC
Confidence 345567788889999999999999999993
No 95
>2ek5_A Predicted transcriptional regulators; helix-turn-helix, interwined alpha helices; 2.20A {Corynebacterium glutamicum atcc 13032} PDB: 2du9_A
Probab=26.38 E-value=53 Score=28.67 Aligned_cols=55 Identities=13% Similarity=0.100 Sum_probs=43.5
Q ss_pred ChHHHHHHHHHHHHHHHhCCCceE-eHHHHhccCCCCCHHHHHHHHHHhhhccccccc
Q 008870 215 TPEKYMECRNHIVAKYMDNPEKRL-IVSDCQGLVDGVSPEDLTRIFRFLNHWGIINYC 271 (550)
Q Consensus 215 tpe~Y~~~RN~iI~~yr~np~~yL-T~t~~r~~l~g~Dv~~i~RIh~FLe~wGlINy~ 271 (550)
.-++|-.||+.|+.-- ..|...| |..+.-..+ |+--..+.+.+.-|+..|||-..
T Consensus 6 ~~~i~~~i~~~I~~g~-l~~G~~LPse~~La~~~-gvSr~tVr~Al~~L~~~Gli~~~ 61 (129)
T 2ek5_A 6 YKQIASLIEDSIVDGT-LSIDQRVPSTNELAAFH-RINPATARNGLTLLVEAGILYKK 61 (129)
T ss_dssp HHHHHHHHHHHHHTTS-SCTTSCBCCHHHHHHHT-TCCHHHHHHHHHHHHTTTSEEEE
T ss_pred HHHHHHHHHHHHHhCC-CCCCCcCcCHHHHHHHH-CcCHHHHHHHHHHHHHCCcEEEe
Confidence 3567888888887643 5688899 887765555 57889999999999999999764
No 96
>2p57_A GTPase-activating protein ZNF289; zinc finger, GAP, structural genomics, structural genomics consortium, SGC, metal binding protein; 1.80A {Homo sapiens}
Probab=23.81 E-value=52 Score=30.13 Aligned_cols=60 Identities=22% Similarity=0.341 Sum_probs=32.4
Q ss_pred ccCccCCCCCCCCCcceeeccCCcCcccChhhhhcCCCCCCCCCCCceecCCCCCCCCCCCCCCCHHHHHHH
Q 008870 343 LSENHCNYCSQPIPAVYYQSQKEVDVLLCPECFHEGRFVTGHSSLDYIRVDPAREYGDIDGETWSDQETFLL 414 (550)
Q Consensus 343 ~~~~~C~~C~~~~~~~~y~c~k~~d~~LC~~CF~~G~~~~~hss~DF~kvd~~~~~~~~~~~~WT~eEel~L 414 (550)
.....|.-|+..- ..+-+.. ..+.+|.+|-.--+..+.| ..|++-- ..+..||.+|...|
T Consensus 35 p~N~~CaDCga~~--P~WaS~n-~GvfiC~~CsgiHR~LG~h--IS~VrSl-------~LD~~W~~~~l~~m 94 (144)
T 2p57_A 35 PTNKACFDCGAKN--PSWASIT-YGVFLCIDCSGVHRSLGVH--LSFIRST-------ELDSNWNWFQLRCM 94 (144)
T ss_dssp GGGGBCTTTCCBS--CCEEEGG-GTEEECHHHHHHHHHHCTT--TCCEEES-------SSCCCCCHHHHHHH
T ss_pred CCCCcCCCCcCCC--CCeEEec-cCEEEhhhchHHHcCCCCC--CCeeeec-------ccCCCCCHHHHHHH
Confidence 3456899898643 3333333 4688999997644432222 1233311 11224998776555
No 97
>1wfh_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=23.74 E-value=90 Score=24.94 Aligned_cols=44 Identities=16% Similarity=0.422 Sum_probs=31.4
Q ss_pred CccCCCCCCCCCcceeeccCCcCcccChhhhhcCCCCCCCC-CCCceecCC
Q 008870 345 ENHCNYCSQPIPAVYYQSQKEVDVLLCPECFHEGRFVTGHS-SLDYIRVDP 394 (550)
Q Consensus 345 ~~~C~~C~~~~~~~~y~c~k~~d~~LC~~CF~~G~~~~~hs-s~DF~kvd~ 394 (550)
...|..|.+.+.-.-|+| .|.. ..|.. -|++..|. +.||.....
T Consensus 15 ~~rC~~C~kkvgl~~f~C-rCg~-~FC~~----HRy~e~H~C~fDyk~~gr 59 (64)
T 1wfh_A 15 PNRCTVCRKRVGLTGFMC-RCGT-TFCGS----HRYPEVHGCTFDFKSAGS 59 (64)
T ss_dssp CCCCTTTCCCCCTTCEEC-SSSC-EECTT----TCSTTTTTCCCCCSCCCC
T ss_pred CCcChhhCCccCccCEEe-ecCC-Eeccc----cCCcccCCCCchhhHHHH
Confidence 468999999887777888 5643 34533 47888887 678876543
No 98
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=22.43 E-value=83 Score=28.49 Aligned_cols=49 Identities=8% Similarity=0.082 Sum_probs=37.8
Q ss_pred HHHHHHHHHHhCCCceEeHHHHhccC------CCCCHHHHHHHHHHhhhccccccc
Q 008870 222 CRNHIVAKYMDNPEKRLIVSDCQGLV------DGVSPEDLTRIFRFLNHWGIINYC 271 (550)
Q Consensus 222 ~RN~iI~~yr~np~~yLT~t~~r~~l------~g~Dv~~i~RIh~FLe~wGlINy~ 271 (550)
-|-.|++....+ ...+|..+.-..| .+++...|.|...+|+.-|||.=-
T Consensus 34 qR~~IL~~L~~~-~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv~~i 88 (162)
T 4ets_A 34 QREVLLKTLYHS-DTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMVTSI 88 (162)
T ss_dssp HHHHHHHHHHSC-CSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSEEEC
T ss_pred HHHHHHHHHHhC-CCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCEEEE
Confidence 366778777665 4899999874333 347899999999999999999643
No 99
>3c7j_A Transcriptional regulator, GNTR family; structural genomics, PSI-2, protein structure initiative, midwest center for STR genomics; HET: MSE; 2.10A {Pseudomonas syringae PV}
Probab=22.30 E-value=34 Score=32.64 Aligned_cols=57 Identities=18% Similarity=0.082 Sum_probs=48.1
Q ss_pred CCChHHHHHHHHHHHHHHHhCCCceEeHHHHhccCCCCCHHHHHHHHHHhhhccccccc
Q 008870 213 DHTPEKYMECRNHIVAKYMDNPEKRLIVSDCQGLVDGVSPEDLTRIFRFLNHWGIINYC 271 (550)
Q Consensus 213 ~ktpe~Y~~~RN~iI~~yr~np~~yLT~t~~r~~l~g~Dv~~i~RIh~FLe~wGlINy~ 271 (550)
+..+.+|-.||+.|+.-. ..|...|+..+.-..+ |+--..|.+-..-|+.-|||-..
T Consensus 26 s~~~~v~~~L~~~I~~g~-l~pG~~L~e~~La~~l-gVSr~~VReAL~~L~~~Glv~~~ 82 (237)
T 3c7j_A 26 LARTVIEEKLRNAIIDGS-LPSGTALRQQELATLF-GVSRMPVREALRQLEAQSLLRVE 82 (237)
T ss_dssp GHHHHHHHHHHHHHHTSS-SCTTCBCCHHHHHHHH-TSCHHHHHHHHHHHHHTTSEEEE
T ss_pred ccHHHHHHHHHHHHHhCC-CCCcCeeCHHHHHHHH-CCCHHHHHHHHHHHHHCCCEEEe
Confidence 456779999999999854 5789999888865555 67888999999999999999875
No 100
>1ntc_A Protein (nitrogen regulation protein (NTRC)); helix-turn-helix, FIS, four-helix bundle, transcription regulation; NMR {Salmonella typhimurium} SCOP: a.4.1.12
Probab=21.92 E-value=55 Score=26.76 Aligned_cols=27 Identities=19% Similarity=0.186 Sum_probs=24.0
Q ss_pred CHHHHHHHHHHHHHcCCCHHHHHHHhC
Q 008870 407 SDQETFLLLEGIEMYNDNWNEIAEHVS 433 (550)
Q Consensus 407 T~eEel~LLEaIe~yg~nW~~IA~~Vg 433 (550)
..-|...|.++++.++||..+.|+.+|
T Consensus 49 ~~~E~~~i~~aL~~~~gn~~~aA~~LG 75 (91)
T 1ntc_A 49 PELERTLLTTALRHTQGHKQEAARLLG 75 (91)
T ss_dssp HHHHHHHHHHHHHHTTTCTTHHHHHTT
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHC
Confidence 345778899999999999999999999
No 101
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=21.59 E-value=1.2e+02 Score=25.93 Aligned_cols=49 Identities=8% Similarity=0.220 Sum_probs=37.4
Q ss_pred HHHHHHHHhCCCceEeHHHHhccCCCCCHHHHHHHHHHhhhccccccccC
Q 008870 224 NHIVAKYMDNPEKRLIVSDCQGLVDGVSPEDLTRIFRFLNHWGIINYCAA 273 (550)
Q Consensus 224 N~iI~~yr~np~~yLT~t~~r~~l~g~Dv~~i~RIh~FLe~wGlINy~~~ 273 (550)
-.|+..-..++..++|+.+.-..+ |++...+.|....|+..|+|--...
T Consensus 29 ~~il~~L~~~~~~~~t~~eLa~~l-~~s~sTV~r~L~~L~~~GlV~r~~~ 77 (123)
T 3r0a_A 29 LNVMKSFLNEPDRWIDTDALSKSL-KLDVSTVQRSVKKLHEKEILQRSQQ 77 (123)
T ss_dssp HHHHHHHHHSTTCCEEHHHHHHHH-TSCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred HHHHHHHHHCCCCCcCHHHHHHHH-CcCHHHHHHHHHHHHHCCCEEeeCC
Confidence 345554445655459999987776 5799999999999999999986543
No 102
>1wg2_A Zinc finger (AN1-like) family protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=21.51 E-value=96 Score=24.76 Aligned_cols=44 Identities=23% Similarity=0.508 Sum_probs=31.1
Q ss_pred CccCCCCCCCCCcceeeccCCcCcccChhhhhcCCCCCCCC-CCCceecCC
Q 008870 345 ENHCNYCSQPIPAVYYQSQKEVDVLLCPECFHEGRFVTGHS-SLDYIRVDP 394 (550)
Q Consensus 345 ~~~C~~C~~~~~~~~y~c~k~~d~~LC~~CF~~G~~~~~hs-s~DF~kvd~ 394 (550)
...|..|.+.+.-.-|+| .|.. ..|. .-|++..|. +.||.....
T Consensus 15 ~~rC~~C~kkvgl~~f~C-rCg~-~FC~----~HR~~e~H~C~fDyk~~gr 59 (64)
T 1wg2_A 15 NNRCFSCNKKVGVMGFKC-KCGS-TFCG----SHRYPEKHECSFDFKEVGS 59 (64)
T ss_dssp SCSCTTTCCCCTTSCEEC-TTSC-EECS----SSCSSTTTTCCCCCSCSCC
T ss_pred CCcChhhCCcccccCeEe-ecCC-Eecc----cCCCccccCCCcchhHHhH
Confidence 468999999877667888 6643 3453 347888887 678876643
No 103
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=21.43 E-value=1.2e+02 Score=24.02 Aligned_cols=38 Identities=11% Similarity=0.166 Sum_probs=31.6
Q ss_pred ceEeHHHHhccCCCCCHHHHHHHHHHhhhccccccccCC
Q 008870 236 KRLIVSDCQGLVDGVSPEDLTRIFRFLNHWGIINYCAAV 274 (550)
Q Consensus 236 ~yLT~t~~r~~l~g~Dv~~i~RIh~FLe~wGlINy~~~p 274 (550)
..+|.++.-+.+ |++...+.|+..-|+..|+|.....+
T Consensus 35 ~~~t~~ela~~l-~is~~tv~~~l~~L~~~g~v~~~~~~ 72 (109)
T 2d1h_A 35 KPITSEELADIF-KLSKTTVENSLKKLIELGLVVRTKTE 72 (109)
T ss_dssp SCEEHHHHHHHH-TCCHHHHHHHHHHHHHTTSEEEEEC-
T ss_pred CCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCCeEeeccc
Confidence 458999987665 67999999999999999999886554
No 104
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=21.31 E-value=1e+02 Score=24.57 Aligned_cols=50 Identities=16% Similarity=0.217 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHhCC-CceEeHHHHhccCCCCCHHHHHHHHHHhhhccccccc
Q 008870 221 ECRNHIVAKYMDNP-EKRLIVSDCQGLVDGVSPEDLTRIFRFLNHWGIINYC 271 (550)
Q Consensus 221 ~~RN~iI~~yr~np-~~yLT~t~~r~~l~g~Dv~~i~RIh~FLe~wGlINy~ 271 (550)
+....|+...+.|+ ..++|+.+.-+.| |++-..|.|...=|++-|+|-..
T Consensus 14 ~~~~~IL~~L~~~~~~~~~t~~eLA~~L-gvs~~tV~~~L~~L~~~G~I~~~ 64 (77)
T 1qgp_A 14 DQEQRILKFLEELGEGKATTAHDLSGKL-GTPKKEINRVLYSLAKKGKLQKE 64 (77)
T ss_dssp HHHHHHHHHHHHHCSSSCEEHHHHHHHH-CCCHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHHHHcCCCCCcCHHHHHHHH-CcCHHHHHHHHHHHHHCCCEEec
Confidence 44577888888887 6789999987776 57889999999999999999664
No 105
>3dpt_A ROCO, RAB family protein; alpha-beta-protein, signaling protein; 2.90A {Chlorobaculum tepidum}
Probab=20.76 E-value=69 Score=32.70 Aligned_cols=61 Identities=16% Similarity=0.434 Sum_probs=42.9
Q ss_pred CCChHHHHHHHHHHHHHHHhCCCceEeHHHHhccC--CC-CCHHHHHHHHHHhhhccccccccCCC
Q 008870 213 DHTPEKYMECRNHIVAKYMDNPEKRLIVSDCQGLV--DG-VSPEDLTRIFRFLNHWGIINYCAAVQ 275 (550)
Q Consensus 213 ~ktpe~Y~~~RN~iI~~yr~np~~yLT~t~~r~~l--~g-~Dv~~i~RIh~FLe~wGlINy~~~p~ 275 (550)
.+-|..|+.+|+.+.+. +. ...|||.+++++.. .| .+-..+.-+..||...|.|-|--+..
T Consensus 12 ~~iP~sW~~l~~~L~~~-~~-~~~~is~~e~~~i~~~~gl~~~~~~~~~l~~LH~lG~il~f~d~~ 75 (332)
T 3dpt_A 12 TPLAPSWIKVKEKLVEA-TT-AQRYLNRTEVEKICNDSGITDPGERKTLLGYLNNLGIVLYFEALD 75 (332)
T ss_dssp -----CHHHHHHHHHHH-HH-HSSEECHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTSSEECTTTC
T ss_pred CccCHHHHHHHHHHHhh-hc-CCCeecHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCEEEEecCCc
Confidence 35799999999999886 33 35899999986432 35 34346889999999999998876543
No 106
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=20.63 E-value=1.3e+02 Score=25.42 Aligned_cols=54 Identities=7% Similarity=0.044 Sum_probs=40.1
Q ss_pred CChHHHHHHHHHHHHHHHhCCCceEeHHHHhccCCCCCHHHHHHHHHHhhhccccccc
Q 008870 214 HTPEKYMECRNHIVAKYMDNPEKRLIVSDCQGLVDGVSPEDLTRIFRFLNHWGIINYC 271 (550)
Q Consensus 214 ktpe~Y~~~RN~iI~~yr~np~~yLT~t~~r~~l~g~Dv~~i~RIh~FLe~wGlINy~ 271 (550)
-|+..|..++ .|+.... ....+|+++.-+.+ |++..++.|+..-|+..|||...
T Consensus 11 lt~~~~~~L~-~l~~l~~--~~~~~s~~ela~~l-~is~~tv~~~l~~Le~~Gli~r~ 64 (139)
T 2x4h_A 11 LSRREFSYLL-TIKRYND--SGEGAKINRIAKDL-KIAPSSVFEEVSHLEEKGLVKKK 64 (139)
T ss_dssp CCHHHHHHHH-HHHHHHT--TTSCBCHHHHHHHH-TCCHHHHHHHHHHHHHTTSEEEE
T ss_pred cCHHHHHHHH-HHHHHHh--cCCCcCHHHHHHHh-CCChHHHHHHHHHHHHCCCEEec
Confidence 3566665555 3444443 34568999987766 57999999999999999999875
Done!