Query 008872
Match_columns 550
No_of_seqs 294 out of 2695
Neff 8.3
Searched_HMMs 46136
Date Thu Mar 28 17:38:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008872.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008872hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF01453 B_lectin: D-mannose b 100.0 2.6E-29 5.5E-34 217.2 4.1 111 73-185 1-114 (114)
2 cd00028 B_lectin Bulb-type man 99.9 1.1E-24 2.4E-29 189.6 15.0 114 31-153 2-116 (116)
3 PF00954 S_locus_glycop: S-loc 99.9 3.9E-25 8.4E-30 190.4 11.2 108 212-321 1-110 (110)
4 smart00108 B_lectin Bulb-type 99.9 1.5E-23 3.3E-28 181.8 14.5 113 31-152 2-114 (114)
5 KOG1187 Serine/threonine prote 99.3 7.2E-12 1.6E-16 130.2 7.5 69 481-549 61-129 (361)
6 PF08276 PAN_2: PAN-like domai 99.1 5E-11 1.1E-15 92.4 4.7 58 338-395 3-66 (66)
7 cd00129 PAN_APPLE PAN/APPLE-li 98.9 1.5E-09 3.3E-14 87.0 5.4 67 339-408 8-79 (80)
8 cd01098 PAN_AP_plant Plant PAN 98.8 4.6E-09 1E-13 85.5 5.5 72 339-410 11-84 (84)
9 smart00108 B_lectin Bulb-type 98.7 4.4E-08 9.5E-13 84.8 8.8 88 92-214 23-111 (114)
10 cd00028 B_lectin Bulb-type man 98.7 9.1E-08 2E-12 83.1 8.6 89 93-216 24-114 (116)
11 PF01453 B_lectin: D-mannose b 98.5 2.5E-06 5.5E-11 73.7 12.1 99 37-153 12-113 (114)
12 KOG1025 Epidermal growth facto 98.4 4.1E-07 8.9E-12 99.2 6.4 50 500-549 701-756 (1177)
13 KOG0196 Tyrosine kinase, EPH ( 97.9 5.8E-06 1.2E-10 90.1 3.0 66 484-549 609-688 (996)
14 KOG3653 Transforming growth fa 97.8 3E-05 6.5E-10 80.3 5.4 41 501-545 216-256 (534)
15 PLN00113 leucine-rich repeat r 97.8 9.1E-05 2E-09 87.7 10.3 57 485-548 683-740 (968)
16 KOG1026 Nerve growth factor re 97.7 2.8E-05 6E-10 85.9 3.7 49 501-549 492-547 (774)
17 smart00473 PAN_AP divergent su 97.7 0.0001 2.3E-09 58.4 6.1 68 340-407 4-76 (78)
18 KOG0193 Serine/threonine prote 97.5 6.3E-05 1.4E-09 80.2 4.0 54 485-547 389-444 (678)
19 cd06624 STKc_ASK Catalytic dom 97.4 0.00012 2.6E-09 72.5 4.5 61 489-549 2-63 (268)
20 PLN03224 probable serine/threo 97.3 0.0002 4.4E-09 77.8 4.9 49 493-541 143-208 (507)
21 KOG1094 Discoidin domain recep 97.3 0.00069 1.5E-08 72.2 8.1 49 501-549 544-593 (807)
22 KOG0595 Serine/threonine-prote 97.1 0.00036 7.8E-09 71.4 3.8 50 500-549 15-67 (429)
23 KOG0194 Protein tyrosine kinas 96.9 0.00086 1.9E-08 71.5 4.4 49 501-549 163-219 (474)
24 KOG0192 Tyrosine kinase specif 96.9 0.0011 2.3E-08 69.1 5.0 49 501-549 47-97 (362)
25 KOG1095 Protein tyrosine kinas 96.8 0.0011 2.3E-08 76.3 4.4 50 500-549 697-753 (1025)
26 cd05067 PTKc_Lck_Blk Catalytic 96.8 0.0019 4.1E-08 63.6 5.8 50 499-549 10-59 (260)
27 PRK09188 serine/threonine prot 96.8 0.0015 3.2E-08 68.2 5.1 56 494-549 17-79 (365)
28 PHA02988 hypothetical protein; 96.8 0.0019 4.1E-08 65.0 5.7 63 481-549 11-76 (283)
29 cd05068 PTKc_Frk_like Catalyti 96.7 0.0023 5E-08 63.1 5.3 54 495-549 6-59 (261)
30 cd07879 STKc_p38delta_MAPK13 C 96.6 0.0041 8.8E-08 64.3 6.3 64 486-549 2-72 (342)
31 KOG4236 Serine/threonine prote 96.5 0.0023 5.1E-08 67.4 4.3 52 497-549 567-621 (888)
32 KOG2052 Activin A type IB rece 96.5 0.002 4.4E-08 66.7 3.6 45 497-545 213-257 (513)
33 cd05034 PTKc_Src_like Catalyti 96.5 0.0047 1E-07 60.7 5.9 53 496-549 7-59 (261)
34 cd05072 PTKc_Lyn Catalytic dom 96.5 0.0041 9E-08 61.2 5.5 52 497-549 8-59 (261)
35 PTZ00284 protein kinase; Provi 96.4 0.0024 5.1E-08 69.2 3.9 60 488-548 122-182 (467)
36 cd05064 PTKc_EphR_A10 Catalyti 96.4 0.0036 7.7E-08 62.1 4.8 53 497-549 7-64 (266)
37 cd05148 PTKc_Srm_Brk Catalytic 96.4 0.0025 5.4E-08 62.7 3.6 54 496-549 7-60 (261)
38 cd05108 PTKc_EGFR Catalytic do 96.4 0.0035 7.5E-08 63.9 4.7 53 497-549 9-67 (316)
39 cd06637 STKc_TNIK Catalytic do 96.4 0.0032 7E-08 62.3 4.2 56 492-548 3-59 (272)
40 cd05102 PTKc_VEGFR3 Catalytic 96.3 0.0026 5.6E-08 65.5 3.3 52 497-548 9-67 (338)
41 cd05096 PTKc_DDR1 Catalytic do 96.3 0.0049 1.1E-07 62.4 4.8 51 499-549 9-77 (304)
42 cd05070 PTKc_Fyn_Yrk Catalytic 96.2 0.0074 1.6E-07 59.4 5.8 48 501-549 12-59 (260)
43 cd05049 PTKc_Trk Catalytic dom 96.2 0.0044 9.5E-08 61.6 4.2 53 497-549 7-66 (280)
44 KOG0600 Cdc2-related protein k 96.2 0.0043 9.3E-08 65.3 4.0 53 497-549 119-174 (560)
45 cd05107 PTKc_PDGFR_beta Cataly 96.2 0.0057 1.2E-07 64.9 5.1 53 497-549 39-98 (401)
46 cd05071 PTKc_Src Catalytic dom 96.2 0.008 1.7E-07 59.4 5.8 52 497-549 8-59 (262)
47 cd05063 PTKc_EphR_A2 Catalytic 96.2 0.0063 1.4E-07 60.1 5.0 55 495-549 5-64 (268)
48 cd05104 PTKc_Kit Catalytic dom 96.2 0.0058 1.3E-07 64.2 4.8 52 497-548 37-95 (375)
49 cd05043 PTK_Ryk Pseudokinase d 96.1 0.0047 1E-07 61.5 3.9 55 495-549 6-66 (280)
50 cd05103 PTKc_VEGFR2 Catalytic 96.1 0.0053 1.1E-07 63.6 4.3 52 497-548 9-67 (343)
51 cd05073 PTKc_Hck Catalytic dom 96.1 0.0073 1.6E-07 59.4 5.0 52 497-549 8-59 (260)
52 cd07877 STKc_p38alpha_MAPK14 C 96.1 0.0081 1.8E-07 62.2 5.4 64 486-549 8-74 (345)
53 PLN00034 mitogen-activated pro 96.1 0.0065 1.4E-07 63.1 4.6 49 501-549 80-130 (353)
54 cd05105 PTKc_PDGFR_alpha Catal 96.0 0.008 1.7E-07 63.8 5.2 53 497-549 39-98 (400)
55 cd06639 STKc_myosinIIIB Cataly 96.0 0.0061 1.3E-07 61.1 4.2 63 485-548 12-75 (291)
56 cd05050 PTKc_Musk Catalytic do 96.0 0.0066 1.4E-07 60.8 4.3 55 495-549 5-66 (288)
57 cd06638 STKc_myosinIIIA Cataly 96.0 0.0064 1.4E-07 60.7 4.2 63 485-548 8-71 (286)
58 KOG0199 ACK and related non-re 96.0 0.0087 1.9E-07 65.4 5.2 59 484-549 106-169 (1039)
59 cd05090 PTKc_Ror1 Catalytic do 96.0 0.0076 1.7E-07 60.1 4.7 50 500-549 10-65 (283)
60 cd06646 STKc_MAP4K5 Catalytic 96.0 0.011 2.4E-07 58.4 5.7 49 500-548 14-63 (267)
61 KOG0197 Tyrosine kinases [Sign 96.0 0.0087 1.9E-07 63.3 5.0 58 484-549 202-259 (468)
62 PTZ00283 serine/threonine prot 95.9 0.0071 1.5E-07 66.1 4.3 57 492-548 29-88 (496)
63 KOG0658 Glycogen synthase kina 95.9 0.0088 1.9E-07 60.6 4.4 48 497-548 26-74 (364)
64 cd07864 STKc_CDK12 Catalytic d 95.9 0.014 3.1E-07 58.6 6.0 57 493-549 5-64 (302)
65 cd05106 PTKc_CSF-1R Catalytic 95.9 0.0088 1.9E-07 62.8 4.6 53 496-548 39-98 (374)
66 cd07871 STKc_PCTAIRE3 Catalyti 95.9 0.014 3E-07 58.7 5.8 53 497-549 7-61 (288)
67 cd05036 PTKc_ALK_LTK Catalytic 95.8 0.01 2.2E-07 59.1 4.6 57 493-549 4-67 (277)
68 cd07872 STKc_PCTAIRE2 Catalyti 95.8 0.014 3E-07 59.3 5.6 53 497-549 8-62 (309)
69 cd07870 STKc_PFTAIRE2 Catalyti 95.8 0.014 3.1E-07 58.4 5.6 57 493-549 3-61 (291)
70 cd07869 STKc_PFTAIRE1 Catalyti 95.8 0.015 3.3E-07 58.8 5.7 55 495-549 5-61 (303)
71 cd05062 PTKc_IGF-1R Catalytic 95.7 0.011 2.4E-07 58.7 4.5 56 493-548 4-66 (277)
72 cd05093 PTKc_TrkB Catalytic do 95.7 0.011 2.4E-07 59.3 4.3 54 496-549 6-65 (288)
73 cd05109 PTKc_HER2 Catalytic do 95.6 0.013 2.9E-07 58.2 4.7 52 497-548 9-66 (279)
74 cd05069 PTKc_Yes Catalytic dom 95.6 0.02 4.3E-07 56.3 5.9 50 499-549 10-59 (260)
75 cd06656 STKc_PAK3 Catalytic do 95.6 0.019 4.1E-07 58.0 5.6 52 497-548 21-73 (297)
76 KOG1035 eIF-2alpha kinase GCN2 95.6 0.0054 1.2E-07 70.7 1.7 56 494-549 478-535 (1351)
77 cd07854 STKc_MAPK4_6 Catalytic 95.6 0.02 4.4E-07 59.1 5.9 54 496-549 6-60 (342)
78 cd07856 STKc_Sty1_Hog1 Catalyt 95.6 0.015 3.3E-07 59.8 4.8 61 489-549 4-67 (328)
79 cd05596 STKc_ROCK Catalytic do 95.5 0.011 2.4E-07 62.0 3.8 57 493-549 41-101 (370)
80 cd05046 PTK_CCK4 Pseudokinase 95.5 0.016 3.5E-07 57.4 4.8 54 496-549 6-66 (275)
81 cd07878 STKc_p38beta_MAPK11 Ca 95.5 0.02 4.2E-07 59.1 5.5 55 495-549 15-72 (343)
82 cd05092 PTKc_TrkA Catalytic do 95.5 0.016 3.4E-07 57.9 4.6 50 500-549 10-65 (280)
83 PTZ00263 protein kinase A cata 95.5 0.017 3.6E-07 59.4 4.8 53 497-549 20-76 (329)
84 cd05061 PTKc_InsR Catalytic do 95.4 0.016 3.4E-07 58.2 4.3 56 494-549 5-67 (288)
85 KOG0591 NIMA (never in mitosis 95.4 0.0053 1.2E-07 60.2 0.7 49 501-549 25-76 (375)
86 cd06657 STKc_PAK4 Catalytic do 95.4 0.021 4.6E-07 57.5 5.1 49 501-549 26-75 (292)
87 cd07849 STKc_ERK1_2_like Catal 95.4 0.025 5.3E-07 58.2 5.6 55 495-549 5-61 (336)
88 cd05144 RIO2_C RIO kinase fami 95.3 0.029 6.3E-07 53.1 5.7 32 497-528 17-48 (198)
89 cd05052 PTKc_Abl Catalytic dom 95.3 0.022 4.7E-07 56.2 5.0 51 497-548 8-59 (263)
90 cd06636 STKc_MAP4K4_6 Catalyti 95.3 0.021 4.6E-07 56.9 4.9 62 486-548 7-69 (282)
91 cd05056 PTKc_FAK Catalytic dom 95.3 0.018 3.9E-07 57.0 4.2 53 497-549 8-65 (270)
92 KOG0201 Serine/threonine prote 95.3 0.022 4.7E-07 59.1 4.8 52 497-548 15-68 (467)
93 cd01100 APPLE_Factor_XI_like S 95.3 0.018 3.9E-07 45.3 3.3 31 360-390 26-57 (73)
94 cd06655 STKc_PAK2 Catalytic do 95.3 0.028 6.1E-07 56.7 5.6 53 497-549 21-74 (296)
95 cd06620 PKc_MAPKK_Byr1_like Ca 95.3 0.02 4.3E-07 57.2 4.5 48 501-548 11-60 (284)
96 cd07844 STKc_PCTAIRE_like Cata 95.2 0.028 6E-07 56.3 5.4 53 497-549 7-61 (291)
97 cd06614 STKc_PAK Catalytic dom 95.2 0.026 5.6E-07 56.4 5.1 56 493-549 17-73 (286)
98 cd07880 STKc_p38gamma_MAPK12 C 95.2 0.03 6.4E-07 57.9 5.7 57 493-549 13-72 (343)
99 cd06650 PKc_MEK1 Catalytic dom 95.2 0.023 5.1E-07 58.5 4.8 54 496-549 6-61 (333)
100 cd06659 STKc_PAK6 Catalytic do 95.2 0.027 5.8E-07 56.9 5.1 49 501-549 27-76 (297)
101 cd06649 PKc_MEK2 Catalytic dom 95.2 0.023 5E-07 58.4 4.7 54 496-549 6-61 (331)
102 KOG1006 Mitogen-activated prot 95.2 0.012 2.7E-07 57.3 2.4 57 484-547 60-118 (361)
103 cd05091 PTKc_Ror2 Catalytic do 95.1 0.023 5E-07 56.6 4.4 49 501-549 11-66 (283)
104 cd05621 STKc_ROCK2 Catalytic d 95.1 0.023 5E-07 59.6 4.5 58 491-548 39-100 (370)
105 cd06644 STKc_STK10_LOK Catalyt 95.1 0.025 5.4E-07 56.8 4.6 49 501-549 18-67 (292)
106 cd06611 STKc_SLK_like Catalyti 95.1 0.019 4E-07 57.2 3.6 53 497-549 7-60 (280)
107 KOG0574 STE20-like serine/thre 95.1 0.0056 1.2E-07 60.4 -0.3 49 497-547 35-84 (502)
108 PTZ00036 glycogen synthase kin 95.1 0.027 5.8E-07 60.6 4.9 52 494-549 65-117 (440)
109 cd06647 STKc_PAK_I Catalytic d 95.0 0.036 7.8E-07 55.8 5.5 52 497-548 21-73 (293)
110 cd06635 STKc_TAO1 Catalytic do 95.0 0.03 6.5E-07 57.1 5.0 53 497-549 27-83 (317)
111 cd05088 PTKc_Tie2 Catalytic do 95.0 0.029 6.3E-07 56.8 4.8 52 497-548 9-64 (303)
112 cd07845 STKc_CDK10 Catalytic d 95.0 0.035 7.6E-07 56.2 5.3 55 495-549 7-64 (309)
113 cd06654 STKc_PAK1 Catalytic do 94.9 0.042 9E-07 55.4 5.7 52 497-548 22-74 (296)
114 cd05051 PTKc_DDR Catalytic dom 94.9 0.031 6.8E-07 56.0 4.7 53 497-549 7-77 (296)
115 cd05622 STKc_ROCK1 Catalytic d 94.9 0.026 5.6E-07 59.2 4.1 62 487-548 35-100 (371)
116 cd06643 STKc_SLK Catalytic dom 94.9 0.03 6.5E-07 55.8 4.4 49 501-549 11-60 (282)
117 PTZ00426 cAMP-dependent protei 94.9 0.031 6.6E-07 57.9 4.6 53 497-549 32-89 (340)
118 cd05054 PTKc_VEGFR Catalytic d 94.9 0.022 4.9E-07 58.8 3.6 52 497-548 9-67 (337)
119 cd05053 PTKc_FGFR Catalytic do 94.8 0.027 5.9E-07 56.4 4.1 54 495-548 12-72 (293)
120 cd05048 PTKc_Ror Catalytic Dom 94.8 0.032 6.9E-07 55.5 4.5 50 500-549 10-66 (283)
121 cd06645 STKc_MAP4K3 Catalytic 94.8 0.029 6.2E-07 55.3 4.1 53 497-549 11-64 (267)
122 cd05055 PTKc_PDGFR Catalytic d 94.8 0.031 6.8E-07 56.6 4.4 54 495-548 35-95 (302)
123 cd07876 STKc_JNK2 Catalytic do 94.8 0.04 8.6E-07 57.3 5.3 55 495-549 21-78 (359)
124 cd06607 STKc_TAO Catalytic dom 94.8 0.05 1.1E-06 55.1 5.9 53 497-549 17-73 (307)
125 cd05057 PTKc_EGFR_like Catalyt 94.7 0.035 7.6E-07 55.2 4.5 51 499-549 11-67 (279)
126 cd05094 PTKc_TrkC Catalytic do 94.7 0.033 7.2E-07 55.9 4.4 53 497-549 7-65 (291)
127 TIGR01982 UbiB 2-polyprenylphe 94.7 0.041 8.8E-07 59.1 5.2 47 497-547 120-166 (437)
128 cd07873 STKc_PCTAIRE1 Catalyti 94.7 0.054 1.2E-06 54.6 5.9 53 497-549 8-62 (301)
129 KOG0198 MEKK and related serin 94.7 0.042 9.2E-07 55.9 4.9 50 500-549 22-72 (313)
130 cd06608 STKc_myosinIII_like Ca 94.7 0.037 8.1E-07 54.5 4.5 56 492-548 3-59 (275)
131 cd06648 STKc_PAK_II Catalytic 94.7 0.047 1E-06 54.7 5.2 50 500-549 24-74 (285)
132 KOG0577 Serine/threonine prote 94.6 0.032 7E-07 60.0 4.0 53 497-549 28-84 (948)
133 cd07865 STKc_CDK9 Catalytic do 94.6 0.055 1.2E-06 54.5 5.7 54 496-549 13-69 (310)
134 KOG0594 Protein kinase PCTAIRE 94.6 0.038 8.2E-07 55.9 4.3 48 501-548 17-67 (323)
135 cd05032 PTKc_InsR_like Catalyt 94.6 0.04 8.6E-07 54.6 4.5 53 497-549 8-67 (277)
136 cd07852 STKc_MAPK15 Catalytic 94.6 0.036 7.8E-07 57.0 4.4 53 496-548 8-63 (337)
137 cd05111 PTK_HER3 Pseudokinase 94.6 0.049 1.1E-06 54.3 5.1 52 498-549 10-67 (279)
138 cd07843 STKc_CDC2L1 Catalytic 94.5 0.048 1.1E-06 54.6 5.0 53 497-549 7-62 (293)
139 cd05110 PTKc_HER4 Catalytic do 94.5 0.043 9.3E-07 55.5 4.7 53 497-549 9-67 (303)
140 cd06658 STKc_PAK5 Catalytic do 94.5 0.04 8.7E-07 55.5 4.4 48 501-548 28-76 (292)
141 PLN03225 Serine/threonine-prot 94.5 0.046 1E-06 60.7 5.0 37 493-529 130-171 (566)
142 cd05097 PTKc_DDR_like Catalyti 94.4 0.035 7.6E-07 55.8 3.8 50 500-549 10-75 (295)
143 cd07858 STKc_TEY_MAPK_plant Ca 94.4 0.057 1.2E-06 55.6 5.4 53 496-548 6-61 (337)
144 cd07866 STKc_BUR1 Catalytic do 94.4 0.061 1.3E-06 54.2 5.4 55 495-549 8-65 (311)
145 cd06618 PKc_MKK7 Catalytic dom 94.4 0.06 1.3E-06 54.1 5.4 50 499-548 19-70 (296)
146 KOG0032 Ca2+/calmodulin-depend 94.4 0.048 1E-06 57.4 4.7 49 501-549 41-93 (382)
147 KOG0580 Serine/threonine prote 94.4 0.022 4.8E-07 54.7 1.9 55 495-549 22-80 (281)
148 cd07855 STKc_ERK5 Catalytic do 94.4 0.068 1.5E-06 54.9 5.8 55 495-549 5-62 (334)
149 cd05095 PTKc_DDR2 Catalytic do 94.3 0.043 9.2E-07 55.2 4.1 53 497-549 7-77 (296)
150 cd07875 STKc_JNK1 Catalytic do 94.3 0.068 1.5E-06 55.7 5.7 55 495-549 24-81 (364)
151 smart00090 RIO RIO-like kinase 94.3 0.055 1.2E-06 53.1 4.6 33 497-529 30-64 (237)
152 KOG1989 ARK protein kinase fam 94.2 0.044 9.6E-07 61.3 4.2 51 499-549 41-92 (738)
153 PTZ00024 cyclin-dependent prot 94.2 0.067 1.4E-06 54.9 5.2 49 501-549 15-78 (335)
154 PF03109 ABC1: ABC1 family; I 94.1 0.022 4.8E-07 49.5 1.3 47 497-547 14-60 (119)
155 KOG0663 Protein kinase PITSLRE 94.0 0.049 1.1E-06 54.8 3.7 52 497-548 78-132 (419)
156 cd07850 STKc_JNK Catalytic dom 94.0 0.078 1.7E-06 54.9 5.4 54 495-548 16-72 (353)
157 cd06633 STKc_TAO3 Catalytic do 94.0 0.072 1.6E-06 54.2 5.1 50 500-549 26-79 (313)
158 KOG4257 Focal adhesion tyrosin 93.9 0.058 1.2E-06 58.5 4.2 50 500-549 394-449 (974)
159 cd07851 STKc_p38 Catalytic dom 93.9 0.062 1.3E-06 55.5 4.3 56 494-549 14-72 (343)
160 cd07874 STKc_JNK3 Catalytic do 93.8 0.086 1.9E-06 54.6 5.3 54 495-548 17-73 (355)
161 cd05101 PTKc_FGFR2 Catalytic d 93.8 0.072 1.6E-06 53.8 4.6 52 497-548 17-77 (304)
162 KOG0575 Polo-like serine/threo 93.7 0.091 2E-06 56.7 5.2 53 497-549 20-76 (592)
163 KOG4250 TANK binding protein k 93.7 0.037 8E-07 60.7 2.2 49 501-549 19-69 (732)
164 KOG4278 Protein tyrosine kinas 93.7 0.046 9.9E-07 59.1 2.8 50 498-548 270-320 (1157)
165 KOG0661 MAPK related serine/th 93.5 0.039 8.5E-07 57.9 2.0 48 501-549 16-66 (538)
166 PHA03212 serine/threonine kina 93.5 0.092 2E-06 55.5 4.9 49 495-549 92-141 (391)
167 cd05099 PTKc_FGFR4 Catalytic d 93.5 0.09 2E-06 53.4 4.6 52 497-548 14-74 (314)
168 cd06634 STKc_TAO2 Catalytic do 93.4 0.082 1.8E-06 53.6 4.1 53 497-549 17-73 (308)
169 cd05098 PTKc_FGFR1 Catalytic d 93.3 0.099 2.1E-06 52.9 4.7 52 497-548 20-80 (307)
170 KOG0581 Mitogen-activated prot 93.1 0.14 3.1E-06 52.2 5.2 58 484-548 75-134 (364)
171 KOG0694 Serine/threonine prote 93.0 0.16 3.5E-06 55.7 5.8 52 495-546 368-423 (694)
172 PHA03211 serine/threonine kina 93.0 0.12 2.6E-06 55.9 5.0 49 495-549 169-218 (461)
173 KOG0605 NDR and related serine 92.6 0.12 2.5E-06 55.2 3.9 54 494-547 140-197 (550)
174 PHA03209 serine/threonine kina 92.3 0.2 4.2E-06 52.2 5.2 51 493-549 64-115 (357)
175 PRK09605 bifunctional UGMP fam 92.3 0.14 3E-06 56.6 4.2 56 494-549 332-394 (535)
176 KOG0667 Dual-specificity tyros 92.0 0.19 4.1E-06 54.7 4.7 48 501-549 192-240 (586)
177 PTZ00266 NIMA-related protein 91.9 0.14 3.1E-06 59.7 3.9 55 495-549 13-70 (1021)
178 PRK04750 ubiB putative ubiquin 91.7 0.27 5.8E-06 54.0 5.6 32 496-528 121-153 (537)
179 cd05100 PTKc_FGFR3 Catalytic d 91.4 0.25 5.5E-06 50.6 4.8 49 500-548 17-74 (334)
180 KOG1167 Serine/threonine prote 91.3 0.12 2.6E-06 53.5 2.2 53 494-548 35-91 (418)
181 KOG0598 Ribosomal protein S6 k 90.9 0.21 4.6E-06 50.9 3.5 54 495-548 25-82 (357)
182 PTZ00267 NIMA-related protein 90.8 0.29 6.2E-06 53.3 4.7 53 497-549 69-123 (478)
183 PHA02882 putative serine/threo 90.7 0.32 6.9E-06 48.9 4.6 31 497-527 14-48 (294)
184 KOG0582 Ste20-like serine/thre 90.4 0.36 7.8E-06 50.6 4.6 48 501-548 32-81 (516)
185 KOG0615 Serine/threonine prote 90.4 0.35 7.6E-06 50.2 4.5 50 500-549 177-234 (475)
186 PHA03207 serine/threonine kina 90.2 0.35 7.6E-06 51.0 4.7 49 496-549 93-144 (392)
187 KOG0578 p21-activated serine/t 89.9 0.4 8.6E-06 51.6 4.6 47 500-547 278-326 (550)
188 PRK10359 lipopolysaccharide co 89.7 0.49 1.1E-05 46.1 4.7 54 494-548 30-92 (232)
189 KOG0200 Fibroblast/platelet-de 89.4 0.44 9.6E-06 53.5 4.9 48 501-548 302-358 (609)
190 KOG0596 Dual specificity; seri 89.2 0.18 3.9E-06 54.1 1.4 49 501-549 367-417 (677)
191 KOG0660 Mitogen-activated prot 88.6 0.39 8.4E-06 48.9 3.3 49 500-548 27-78 (359)
192 cd05039 PTKc_Csk_like Catalyti 88.1 0.51 1.1E-05 46.0 3.8 35 497-532 8-42 (256)
193 PHA03210 serine/threonine kina 87.5 0.24 5.3E-06 54.2 1.2 55 494-549 147-221 (501)
194 KOG0583 Serine/threonine prote 87.1 0.85 1.8E-05 47.8 4.9 53 497-549 19-77 (370)
195 KOG1164 Casein kinase (serine/ 87.0 0.67 1.5E-05 47.5 4.1 53 496-548 19-73 (322)
196 KOG1219 Uncharacterized conser 86.0 1.3 2.9E-05 54.6 6.1 27 295-321 3870-3898(4289)
197 KOG0984 Mitogen-activated prot 85.9 0.46 1E-05 45.0 1.9 48 500-547 51-100 (282)
198 KOG0611 Predicted serine/threo 85.8 0.48 1E-05 49.0 2.2 49 501-549 59-111 (668)
199 KOG0579 Ste20-like serine/thre 85.8 0.17 3.8E-06 55.0 -1.0 47 501-547 38-85 (1187)
200 cd00053 EGF Epidermal growth f 85.3 0.65 1.4E-05 30.0 2.0 30 291-320 2-32 (36)
201 COG0661 AarF Predicted unusual 84.8 1.2 2.5E-05 48.8 4.7 47 496-546 127-173 (517)
202 KOG1163 Casein kinase (serine/ 84.8 1.2 2.6E-05 43.3 4.1 41 487-528 8-49 (341)
203 PF07645 EGF_CA: Calcium-bindi 84.4 0.25 5.3E-06 34.3 -0.5 32 289-320 3-36 (42)
204 KOG4721 Serine/threonine prote 84.1 0.65 1.4E-05 50.2 2.3 38 484-529 120-157 (904)
205 KOG0986 G protein-coupled rece 84.0 0.3 6.5E-06 51.3 -0.2 55 495-549 185-243 (591)
206 KOG1027 Serine/threonine prote 83.6 0.48 1E-05 53.2 1.1 48 495-546 509-557 (903)
207 KOG0607 MAP kinase-interacting 83.1 0.99 2.1E-05 45.5 3.0 56 486-546 74-130 (463)
208 KOG0592 3-phosphoinositide-dep 82.1 0.74 1.6E-05 49.4 1.8 54 495-548 73-130 (604)
209 KOG1166 Mitotic checkpoint ser 82.1 0.78 1.7E-05 53.4 2.1 37 491-527 694-730 (974)
210 KOG2345 Serine/threonine prote 82.0 1.1 2.4E-05 43.7 2.7 50 499-548 25-75 (302)
211 KOG1024 Receptor-like protein 81.8 0.75 1.6E-05 47.5 1.6 60 488-547 277-343 (563)
212 cd05083 PTKc_Chk Catalytic dom 81.2 1.1 2.3E-05 43.7 2.5 31 498-529 9-39 (254)
213 cd05082 PTKc_Csk Catalytic dom 80.9 1.5 3.3E-05 42.7 3.4 33 497-530 8-40 (256)
214 PRK11138 outer membrane biogen 80.4 25 0.00054 37.0 12.8 77 72-149 87-186 (394)
215 PF12661 hEGF: Human growth fa 79.7 0.39 8.4E-06 24.5 -0.6 11 310-320 1-11 (13)
216 smart00179 EGF_CA Calcium-bind 79.4 1.4 3.1E-05 29.2 1.9 30 289-318 3-33 (39)
217 KOG4279 Serine/threonine prote 78.8 2.1 4.6E-05 47.5 3.8 50 500-549 580-630 (1226)
218 KOG0585 Ca2+/calmodulin-depend 78.7 2.9 6.4E-05 44.4 4.8 55 495-549 97-166 (576)
219 PF08693 SKG6: Transmembrane a 78.5 2.4 5.1E-05 29.0 2.6 13 424-436 16-28 (40)
220 KOG0610 Putative serine/threon 76.9 2.3 4.9E-05 44.4 3.3 49 501-549 83-135 (459)
221 PHA03390 pk1 serine/threonine- 75.3 5.7 0.00012 39.1 5.8 35 495-529 14-51 (267)
222 PF12662 cEGF: Complement Clr- 74.8 1.4 2.9E-05 26.6 0.6 12 309-320 2-13 (24)
223 cd00054 EGF_CA Calcium-binding 74.4 2.5 5.4E-05 27.6 2.0 31 289-319 3-34 (38)
224 KOG1165 Casein kinase (serine/ 74.1 3.4 7.4E-05 42.1 3.6 45 496-540 29-76 (449)
225 PF07974 EGF_2: EGF-like domai 73.7 2.9 6.2E-05 27.1 2.0 25 295-320 6-30 (32)
226 PF01683 EB: EB module; Inter 73.6 2.5 5.5E-05 30.6 2.0 34 285-321 16-49 (52)
227 KOG0668 Casein kinase II, alph 73.1 2.2 4.8E-05 41.2 1.9 46 501-549 44-90 (338)
228 PF04478 Mid2: Mid2 like cell 72.6 2.5 5.3E-05 37.9 2.0 13 419-431 48-60 (154)
229 KOG0586 Serine/threonine prote 70.8 6.4 0.00014 43.0 5.0 56 494-549 55-113 (596)
230 PF12947 EGF_3: EGF domain; I 69.5 1 2.3E-05 30.1 -0.8 27 294-320 5-32 (36)
231 PF09064 Tme5_EGF_like: Thromb 68.5 3 6.4E-05 27.3 1.2 19 302-320 11-29 (34)
232 KOG4649 PQQ (pyrrolo-quinoline 67.9 24 0.00053 34.7 7.7 47 72-118 167-218 (354)
233 KOG0669 Cyclin T-dependent kin 67.1 0.58 1.3E-05 45.6 -3.3 47 501-547 23-72 (376)
234 PRK01723 3-deoxy-D-manno-octul 67.0 10 0.00022 37.1 5.3 47 501-548 37-97 (239)
235 KOG0983 Mitogen-activated prot 66.8 10 0.00022 37.7 5.0 54 486-546 90-145 (391)
236 KOG0612 Rho-associated, coiled 66.5 2.4 5.3E-05 49.5 0.8 59 489-547 69-131 (1317)
237 PF02439 Adeno_E3_CR2: Adenovi 66.4 2 4.3E-05 28.9 0.1 18 423-440 8-25 (38)
238 COG2112 Predicted Ser/Thr prot 66.0 9.3 0.0002 35.7 4.4 44 501-547 28-71 (201)
239 KOG0616 cAMP-dependent protein 65.7 4.8 0.0001 40.3 2.6 50 500-549 49-102 (355)
240 PF00008 EGF: EGF-like domain 65.6 1.3 2.9E-05 28.6 -0.9 25 296-320 5-31 (32)
241 PF00024 PAN_1: PAN domain Thi 64.7 4.4 9.5E-05 31.5 1.8 32 360-391 24-57 (79)
242 PF13360 PQQ_2: PQQ-like domai 63.9 51 0.0011 31.3 9.6 78 72-149 54-148 (238)
243 PF01102 Glycophorin_A: Glycop 63.3 2.3 5E-05 36.9 -0.1 12 423-434 69-80 (122)
244 smart00223 APPLE APPLE domain. 63.2 8 0.00017 30.9 3.0 30 360-389 23-56 (79)
245 KOG1214 Nidogen and related ba 62.7 4.8 0.0001 45.3 2.2 64 260-323 749-823 (1289)
246 KOG0666 Cyclin C-dependent kin 62.2 4.8 0.0001 40.7 1.9 47 501-547 30-83 (438)
247 KOG0587 Traf2- and Nck-interac 60.4 9.9 0.00021 43.5 4.1 59 488-547 12-71 (953)
248 KOG0696 Serine/threonine prote 59.9 3.9 8.5E-05 42.7 0.9 41 488-529 343-384 (683)
249 smart00181 EGF Epidermal growt 59.9 6.7 0.00014 25.3 1.7 24 295-319 6-30 (35)
250 KOG0670 U4/U6-associated splic 59.4 8.4 0.00018 41.6 3.2 47 502-549 439-486 (752)
251 PF15102 TMEM154: TMEM154 prot 59.2 3.8 8.3E-05 36.5 0.6 8 485-492 125-132 (146)
252 PF14531 Kinase-like: Kinase-l 59.0 14 0.0003 37.3 4.6 49 499-547 16-68 (288)
253 PRK11138 outer membrane biogen 59.0 25 0.00054 37.0 6.8 61 91-152 70-148 (394)
254 cd05120 APH_ChoK_like Aminogly 57.4 21 0.00046 30.6 5.2 29 501-530 4-32 (155)
255 KOG1219 Uncharacterized conser 56.9 12 0.00027 47.0 4.3 26 295-320 3909-3935(4289)
256 PF13360 PQQ_2: PQQ-like domai 56.8 46 0.001 31.6 7.9 78 72-149 11-102 (238)
257 PF13095 FTA2: Kinetochore Sim 56.3 18 0.0004 34.5 4.7 64 480-549 27-112 (207)
258 PF14575 EphA2_TM: Ephrin type 53.9 3.2 7E-05 32.8 -0.7 15 484-498 56-70 (75)
259 KOG1235 Predicted unusual prot 53.3 23 0.00049 39.0 5.4 32 496-528 163-194 (538)
260 TIGR03300 assembly_YfgL outer 53.2 44 0.00096 34.7 7.6 57 92-148 67-130 (377)
261 KOG1290 Serine/threonine prote 51.6 18 0.00038 38.9 4.0 50 499-549 82-132 (590)
262 KOG1152 Signal transduction se 50.7 13 0.00028 40.7 2.9 53 497-549 563-624 (772)
263 KOG4258 Insulin/growth factor 50.0 6.7 0.00014 44.5 0.7 31 486-517 986-1016(1025)
264 KOG1151 Tousled-like protein k 49.9 3.5 7.5E-05 43.4 -1.4 27 501-527 469-496 (775)
265 KOG0584 Serine/threonine prote 49.7 5.8 0.00013 43.5 0.2 48 501-548 46-98 (632)
266 PF14295 PAN_4: PAN domain; PD 49.7 10 0.00023 26.6 1.5 22 360-381 17-38 (51)
267 TIGR03300 assembly_YfgL outer 49.7 59 0.0013 33.7 7.8 52 97-148 249-304 (377)
268 PF01034 Syndecan: Syndecan do 49.5 5.4 0.00012 30.2 -0.1 11 423-433 14-24 (64)
269 KOG0664 Nemo-like MAPK-related 48.3 9.1 0.0002 37.9 1.2 46 501-546 59-107 (449)
270 PF08277 PAN_3: PAN-like domai 48.3 33 0.00071 26.2 4.3 29 360-389 21-49 (71)
271 cd05845 Ig2_L1-CAM_like Second 47.6 32 0.00069 28.5 4.2 32 72-104 32-63 (95)
272 smart00605 CW CW domain. 46.8 40 0.00086 27.6 4.8 39 360-398 23-62 (94)
273 PF01436 NHL: NHL repeat; Int 45.1 32 0.0007 21.2 3.0 21 92-112 6-26 (28)
274 KOG1345 Serine/threonine kinas 44.8 16 0.00034 36.5 2.2 45 497-542 26-71 (378)
275 PF15345 TMEM51: Transmembrane 44.1 51 0.0011 31.8 5.5 18 521-539 193-210 (233)
276 KOG1226 Integrin beta subunit 41.6 50 0.0011 37.3 5.8 22 296-320 556-577 (783)
277 KOG0671 LAMMER dual specificit 41.4 12 0.00026 38.8 0.9 48 500-548 94-142 (415)
278 KOG0033 Ca2+/calmodulin-depend 37.6 1.7 3.7E-05 42.3 -5.4 47 501-547 17-66 (355)
279 PF06697 DUF1191: Protein of u 35.7 40 0.00086 33.6 3.5 20 418-437 210-229 (278)
280 COG0478 RIO-like serine/threon 35.0 38 0.00082 34.0 3.2 26 501-526 97-122 (304)
281 cd01099 PAN_AP_HGF Subfamily o 33.8 39 0.00084 26.8 2.6 31 359-389 25-58 (80)
282 PF02009 Rifin_STEVOR: Rifin/s 33.8 22 0.00047 36.0 1.4 9 440-448 277-285 (299)
283 PF13908 Shisa: Wnt and FGF in 33.4 32 0.00069 32.0 2.4 14 421-434 78-91 (179)
284 cd00216 PQQ_DH Dehydrogenases 33.4 1.1E+02 0.0025 33.2 7.1 77 72-149 37-136 (488)
285 cd05081 PTKc_Jak2_Jak3_rpt2 Ca 33.2 39 0.00084 33.2 3.2 33 517-549 31-63 (284)
286 KOG4717 Serine/threonine prote 31.8 30 0.00065 37.5 2.1 46 501-546 24-72 (864)
287 PF14670 FXa_inhibition: Coagu 30.9 13 0.00028 24.9 -0.5 14 307-320 17-30 (36)
288 PF12276 DUF3617: Protein of u 30.8 39 0.00085 30.6 2.5 33 1-33 1-33 (162)
289 KOG4645 MAPKKK (MAP kinase kin 30.8 27 0.00059 41.9 1.7 55 494-548 1234-1291(1509)
290 PF12946 EGF_MSP1_1: MSP1 EGF 30.6 10 0.00023 25.4 -0.9 26 295-320 5-32 (37)
291 PTZ00382 Variant-specific surf 29.5 38 0.00082 28.1 1.9 8 313-320 9-16 (96)
292 TIGR02513 type_III_yscB type I 29.3 1E+02 0.0022 27.2 4.5 51 90-140 21-95 (139)
293 KOG1033 eIF-2alpha kinase PEK/ 29.2 11 0.00025 40.5 -1.5 54 494-547 48-103 (516)
294 cd00216 PQQ_DH Dehydrogenases 29.0 2.1E+02 0.0046 31.1 8.3 53 98-151 365-433 (488)
295 TIGR01478 STEVOR variant surfa 28.6 26 0.00055 34.9 0.9 11 438-448 277-287 (295)
296 KOG0599 Phosphorylase kinase g 28.5 35 0.00076 34.0 1.8 53 497-549 19-80 (411)
297 PTZ00370 STEVOR; Provisional 27.7 27 0.00059 34.8 0.9 11 438-448 273-283 (296)
298 PHA02887 EGF-like protein; Pro 27.6 47 0.001 28.4 2.1 33 287-320 82-119 (126)
299 PF08114 PMP1_2: ATPase proteo 26.4 89 0.0019 21.4 2.9 12 435-446 23-34 (43)
300 PF07172 GRP: Glycine rich pro 26.2 35 0.00075 28.3 1.1 9 1-9 1-9 (95)
301 KOG0690 Serine/threonine prote 25.4 34 0.00073 35.0 1.1 36 495-530 168-204 (516)
302 PF12877 DUF3827: Domain of un 25.4 68 0.0015 35.7 3.4 11 420-430 268-278 (684)
303 KOG4289 Cadherin EGF LAG seven 24.5 39 0.00085 40.9 1.5 27 294-320 1244-1271(2531)
304 PF07204 Orthoreo_P10: Orthore 24.4 43 0.00094 27.4 1.3 20 430-449 50-69 (98)
305 PTZ00046 rifin; Provisional 24.0 21 0.00045 36.9 -0.7 17 434-450 329-345 (358)
306 PF01011 PQQ: PQQ enzyme repea 23.3 80 0.0017 20.9 2.3 20 130-149 7-26 (38)
307 PF05935 Arylsulfotrans: Aryls 22.9 1.2E+02 0.0026 33.0 4.9 53 98-154 127-186 (477)
308 TIGR01477 RIFIN variant surfac 22.8 23 0.00049 36.5 -0.7 16 435-450 325-340 (353)
309 cd05038 PTKc_Jak_rpt2 Catalyti 22.5 86 0.0019 30.4 3.5 32 518-549 32-64 (284)
310 COG1520 FOG: WD40-like repeat 22.2 3.3E+02 0.0072 28.2 8.0 78 72-149 86-179 (370)
311 PF01102 Glycophorin_A: Glycop 21.8 31 0.00066 30.0 0.0 16 434-449 77-92 (122)
312 PF14610 DUF4448: Protein of u 21.7 65 0.0014 30.2 2.2 9 422-430 159-167 (189)
313 PF14269 Arylsulfotran_2: Aryl 21.5 8.5E+02 0.018 24.6 11.7 11 72-82 173-183 (299)
314 PF12458 DUF3686: ATPase invol 21.3 1.7E+02 0.0037 31.1 5.2 58 36-107 310-368 (448)
315 PF11403 Yeast_MT: Yeast metal 20.1 1E+02 0.0022 20.0 2.1 21 295-319 12-32 (40)
No 1
>PF01453 B_lectin: D-mannose binding lectin; InterPro: IPR001480 A bulb lectin super-family (Amaryllidaceae, Orchidaceae and Aliaceae) contains a ~115-residue-long domain whose overall three dimensional fold is very similar to that of [, ]: Dictyostelium discoideum comitin, an actin binding protein Curculigo latifolia curculin, a sweet tasting and taste-modifying protein This domain generally binds mannose, but in at least one protein, curculin, it is apparently devoid of mannose-binding activity. Each bulb-type lectin domain consists of three sequential beta-sheet subdomains (I, II, III) that are inter-related by pseudo three-fold symmetry. The three subdomains are flat four-stranded, antiparrallel beta-sheets. Together they form a 12-stranded beta-barrel in which the barrel axis coincides with the pseudo 3-fold axis.; GO: 0005529 sugar binding; PDB: 3M7H_A 3M7J_B 3MEZ_D 1DLP_A 1BWU_D 1KJ1_A 1B2P_A 1XD6_A 2DPF_C 2D04_B ....
Probab=99.95 E-value=2.6e-29 Score=217.17 Aligned_cols=111 Identities=46% Similarity=0.682 Sum_probs=80.9
Q ss_pred CceEEEEeCCCCCCCCC--CceEEEeeCCcEEEEcCCccEEEee-ccccCcCCCCceEEEecCCCeEEEeCCCCceeeee
Q 008872 73 NKTVVWVANRNKPLIDS--SGIFTISEDGNLVVLNGKKQVHWSS-NVSSLANNSNTRAQLLDSGNLVLHDNISQVSIWDS 149 (550)
Q Consensus 73 ~~~~vW~anr~~p~~~~--~~~l~l~~~G~L~l~~~~~~~~W~s-~~~~~~~~~~~~~~l~d~GNlvl~~~~~~~~~WqS 149 (550)
++||||+|||+.|+... ..+|.|+.||+|+|+|..+.++|++ ++.+... .+..|.|+|+|||||++.. +.+||||
T Consensus 1 ~~tvvW~an~~~p~~~~s~~~~L~l~~dGnLvl~~~~~~~iWss~~t~~~~~-~~~~~~L~~~GNlvl~d~~-~~~lW~S 78 (114)
T PF01453_consen 1 PRTVVWVANRNSPLTSSSGNYTLILQSDGNLVLYDSNGSVIWSSNNTSGRGN-SGCYLVLQDDGNLVLYDSS-GNVLWQS 78 (114)
T ss_dssp ---------TTEEEEECETTEEEEEETTSEEEEEETTTEEEEE--S-TTSS--SSEEEEEETTSEEEEEETT-SEEEEES
T ss_pred CcccccccccccccccccccccceECCCCeEEEEcCCCCEEEEecccCCccc-cCeEEEEeCCCCEEEEeec-ceEEEee
Confidence 36899999999999542 4789999999999999999999999 5444321 3789999999999999975 8899999
Q ss_pred cCCCCccccCCCeeccccCCCcceEEeeccCCCCCC
Q 008872 150 FQEPTDTFYSEMKVSTDLRTGKKVQLTSWRSLSNPS 185 (550)
Q Consensus 150 Fd~PTDtlLpgq~l~~~~~tg~~~~L~S~~s~~~~s 185 (550)
|||||||+||+|+|+.+..+|.+..++||++.+|||
T Consensus 79 f~~ptdt~L~~q~l~~~~~~~~~~~~~sw~s~~dps 114 (114)
T PF01453_consen 79 FDYPTDTLLPGQKLGDGNVTGKNDSLTSWSSNTDPS 114 (114)
T ss_dssp TTSSS-EEEEEET--TSEEEEESTSSEEEESS----
T ss_pred cCCCccEEEeccCcccCCCccccceEEeECCCCCCC
Confidence 999999999999999987777666799999999996
No 2
>cd00028 B_lectin Bulb-type mannose-specific lectin. The domain contains a three-fold internal repeat (beta-prism architecture). The consensus sequence motif QXDXNXVXY is involved in alpha-D-mannose recognition. Lectins are carbohydrate-binding proteins which specifically recognize diverse carbohydrates and mediate a wide variety of biological processes, such as cell-cell and host-pathogen interactions, serum glycoprotein turnover, and innate immune responses.
Probab=99.92 E-value=1.1e-24 Score=189.58 Aligned_cols=114 Identities=43% Similarity=0.697 Sum_probs=100.1
Q ss_pred CcccCCCeEEeCCCeEEEeeecCCCCCCc-cEEEEEeecCCCCCceEEEEeCCCCCCCCCCceEEEeeCCcEEEEcCCcc
Q 008872 31 QFIRDPESIISSGSKFKLGFFSPDGNFTN-RYIGIWYNKGGSANKTVVWVANRNKPLIDSSGIFTISEDGNLVVLNGKKQ 109 (550)
Q Consensus 31 ~~l~~~~~l~S~~g~F~~gf~~~~~~~~~-~~l~i~~~~~~~~~~~~vW~anr~~p~~~~~~~l~l~~~G~L~l~~~~~~ 109 (550)
+.|..+++|+|+++.|++|||... ... .+++|||... + +++||.||++.|. ...+.|.|+.||+|+|+|.+|.
T Consensus 2 ~~l~~~~~l~s~~~~f~~G~~~~~--~q~~dgnlv~~~~~--~-~~~vW~snt~~~~-~~~~~l~l~~dGnLvl~~~~g~ 75 (116)
T cd00028 2 NPLSSGQTLVSSGSLFELGFFKLI--MQSRDYNLILYKGS--S-RTVVWVANRDNPS-GSSCTLTLQSDGNLVIYDGSGT 75 (116)
T ss_pred cCcCCCCEEEeCCCcEEEecccCC--CCCCeEEEEEEeCC--C-CeEEEECCCCCCC-CCCEEEEEecCCCeEEEcCCCc
Confidence 467889999999999999999987 344 7899999876 4 7899999999884 4568899999999999999999
Q ss_pred EEEeeccccCcCCCCceEEEecCCCeEEEeCCCCceeeeecCCC
Q 008872 110 VHWSSNVSSLANNSNTRAQLLDSGNLVLHDNISQVSIWDSFQEP 153 (550)
Q Consensus 110 ~~W~s~~~~~~~~~~~~~~l~d~GNlvl~~~~~~~~~WqSFd~P 153 (550)
++|++++.+.. ...+|+|+|+|||||++.+ +.+||||||||
T Consensus 76 ~vW~S~~~~~~--~~~~~~L~ddGnlvl~~~~-~~~~W~Sf~~P 116 (116)
T cd00028 76 VVWSSNTTRVN--GNYVLVLLDDGNLVLYDSD-GNFLWQSFDYP 116 (116)
T ss_pred EEEEecccCCC--CceEEEEeCCCCEEEECCC-CCEEEcCCCCC
Confidence 99999987522 5789999999999999987 78999999999
No 3
>PF00954 S_locus_glycop: S-locus glycoprotein family; InterPro: IPR000858 In Brassicaceae, self-incompatible plants have a self/non-self recognition system, which involves the inability of flowering plants to achieve self-fertilisation. This is sporophytically controlled by multiple alleles at a single locus (S). There are a total of 50 different S alleles in Brassica oleracea. S-locus glycoproteins, as well as S-receptor kinases, are in linkage with the S-alleles []. Most of the proteins within this family contain apple-like domain (IPR003609 from INTERPRO), which is predicted to possess protein- and/or carbohydrate-binding functions.; GO: 0048544 recognition of pollen
Probab=99.92 E-value=3.9e-25 Score=190.44 Aligned_cols=108 Identities=42% Similarity=0.940 Sum_probs=100.4
Q ss_pred eecCCCCCceeeceeccceeeeceeEeeeeCcCCeEEEEEEEcCCceE--EEEecCCCeEEEEEeCCCCceEEEEeecCC
Q 008872 212 WRSGPWNGRYFIGIPDMNSVYLDGFNLGEDHQKGTRYLTFAFADNDVF--FALTPQGNLEERAWVDGKAHLKIYFFYPTN 289 (550)
Q Consensus 212 w~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~~~G~l~~y~~~~~~~~W~~~~~~p~~ 289 (550)
||+|+|+|..|+++|+|.....+.+.|+. +.++.+++|...+.+.+ ++||++|++++|.|.+..+.|.+.|.+|.+
T Consensus 1 wrsG~WnG~~f~g~p~~~~~~~~~~~fv~--~~~e~~~t~~~~~~s~~~r~~ld~~G~l~~~~w~~~~~~W~~~~~~p~d 78 (110)
T PF00954_consen 1 WRSGPWNGQRFSGIPEMSSNSLYNYSFVS--NNEEVYYTYSLSNSSVLSRLVLDSDGQLQRYIWNESTQSWSVFWSAPKD 78 (110)
T ss_pred CCccccCCeEECCcccccccceeEEEEEE--CCCeEEEEEecCCCceEEEEEEeeeeEEEEEEEecCCCcEEEEEEeccc
Confidence 89999999999999999877778888998 99999999998777654 999999999999999999999999999999
Q ss_pred CCccccccCCCcccCCCCCCcCCCCCCCCcCC
Q 008872 290 DCDVYGKCGAFGSCNSQKIPICSCLLGFEPKN 321 (550)
Q Consensus 290 ~C~~~~~CG~~g~C~~~~~~~C~C~~gf~~~~ 321 (550)
+|++|+.||+||+|+.+..+.|+|++||+|++
T Consensus 79 ~Cd~y~~CG~~g~C~~~~~~~C~Cl~GF~P~n 110 (110)
T PF00954_consen 79 QCDVYGFCGPNGICNSNNSPKCSCLPGFEPKN 110 (110)
T ss_pred CCCCccccCCccEeCCCCCCceECCCCcCCCc
Confidence 99999999999999887788899999999873
No 4
>smart00108 B_lectin Bulb-type mannose-specific lectin.
Probab=99.91 E-value=1.5e-23 Score=181.85 Aligned_cols=113 Identities=41% Similarity=0.682 Sum_probs=98.8
Q ss_pred CcccCCCeEEeCCCeEEEeeecCCCCCCccEEEEEeecCCCCCceEEEEeCCCCCCCCCCceEEEeeCCcEEEEcCCccE
Q 008872 31 QFIRDPESIISSGSKFKLGFFSPDGNFTNRYIGIWYNKGGSANKTVVWVANRNKPLIDSSGIFTISEDGNLVVLNGKKQV 110 (550)
Q Consensus 31 ~~l~~~~~l~S~~g~F~~gf~~~~~~~~~~~l~i~~~~~~~~~~~~vW~anr~~p~~~~~~~l~l~~~G~L~l~~~~~~~ 110 (550)
+.|..++.|+|+++.|++|||... ....+++|||... + +++||+|||+.|+.. .+.|.|+.||+|+|+|.++.+
T Consensus 2 ~~l~~~~~l~s~~~~f~~G~~~~~--~q~dgnlV~~~~~--~-~~~vW~snt~~~~~~-~~~l~l~~dGnLvl~~~~g~~ 75 (114)
T smart00108 2 NTLSSGQTLVSGNSLFELGFFTLI--MQNDYNLILYKSS--S-RTVVWVANRDNPVSD-SCTLTLQSDGNLVLYDGDGRV 75 (114)
T ss_pred cccCCCCEEecCCCcEeeeccccC--CCCCEEEEEEECC--C-CcEEEECCCCCCCCC-CEEEEEeCCCCEEEEeCCCCE
Confidence 467789999999999999999987 3467899999886 4 789999999999764 488999999999999999999
Q ss_pred EEeeccccCcCCCCceEEEecCCCeEEEeCCCCceeeeecCC
Q 008872 111 HWSSNVSSLANNSNTRAQLLDSGNLVLHDNISQVSIWDSFQE 152 (550)
Q Consensus 111 ~W~s~~~~~~~~~~~~~~l~d~GNlvl~~~~~~~~~WqSFd~ 152 (550)
+|++++.... +..+++|+|+|||||++.. +.++||||||
T Consensus 76 vW~S~t~~~~--~~~~~~L~ddGnlvl~~~~-~~~~W~Sf~~ 114 (114)
T smart00108 76 VWSSNTTGAN--GNYVLVLLDDGNLVIYDSD-GNFLWQSFDY 114 (114)
T ss_pred EEEecccCCC--CceEEEEeCCCCEEEECCC-CCEEeCCCCC
Confidence 9999986222 4789999999999999986 7799999997
No 5
>KOG1187 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=99.26 E-value=7.2e-12 Score=130.25 Aligned_cols=69 Identities=55% Similarity=0.856 Sum_probs=61.5
Q ss_pred CcccccHHHHHHhhccccccceeccCCCccEEEEEeCCCCEEEEEEccccCCcCHHHHHHHHHHhhccc
Q 008872 481 DLLVFNFEELANATNNFQLANKLGQGGFGPVYKGKLQDGQEIAVKRLSKASGQGQEEFMNEVMIHKDKV 549 (550)
Q Consensus 481 ~~~~fs~~eL~~AT~~Fs~~~~LG~G~fG~VYKG~L~~g~~VAVKrL~~~s~~~~~eF~~Ev~~i~~l~ 549 (550)
..+.|+|+||++||++|+++++||+|+||.||||.|++|+.||||++...+.+..+||.+||.+|+++.
T Consensus 61 ~~~~fs~~el~~AT~~Fs~~~~ig~Ggfg~VYkG~l~~~~~vAVK~~~~~~~~~~~eF~~Ei~~ls~l~ 129 (361)
T KOG1187|consen 61 PLRSFSYDELRKATNNFSESNLIGEGGFGTVYKGVLSDGTVVAVKRLSSNSGQGEREFLNEVEILSRLR 129 (361)
T ss_pred CcceeeHHHHHHHHhCCchhcceecCCCeEEEEEEECCCCEEEEEEecCCCCcchhHHHHHHHHHhcCC
Confidence 456799999999999999999999999999999999999999999997554332778999999999974
No 6
>PF08276 PAN_2: PAN-like domain; InterPro: IPR013227 PAN domains have significant functional versatility fulfilling diverse biological functions by mediating protein-protein or protein-carbohydrate interactions []. These domains contain a hair-pin loop like structure, similar to knottins, but the pattern of disulphide bonds differs
Probab=99.13 E-value=5e-11 Score=92.40 Aligned_cols=58 Identities=47% Similarity=1.028 Sum_probs=48.1
Q ss_pred CCCCeEEeecCCCCCcccc---cccchhhHHhhccCCCceEeEeccC---Ccceeeeecccccc
Q 008872 338 KQDGFFKLETMKVPYFAER---SSANEDKCKDQCSNNCSCKAYAYEI---GVGCMIWTHNLIDI 395 (550)
Q Consensus 338 ~~~~f~~~~~~~~p~~~~~---~~~~~~~C~~~Cl~nCsC~a~~~~~---g~~C~~~~~~l~~~ 395 (550)
.+++|++++++++|++... ...++++|+.+|++||+|.||+|.+ +.+|++|+++|+|+
T Consensus 3 ~~d~F~~l~~~~~p~~~~~~~~~~~s~~~C~~~Cl~nCsC~Ayay~~~~~~~~C~lW~~~L~d~ 66 (66)
T PF08276_consen 3 SGDGFLKLPNMKLPDFDNAIVDSSVSLEECEKACLSNCSCTAYAYSNLSGGGGCLLWYGDLVDL 66 (66)
T ss_pred CCCEEEEECCeeCCCCcceeeecCCCHHHHHhhcCCCCCEeeEEeeccCCCCEEEEEcCEeecC
Confidence 4689999999999994222 2248999999999999999999984 57799999998764
No 7
>cd00129 PAN_APPLE PAN/APPLE-like domain; present in N-terminal (N) domains of plasminogen/ hepatocyte growth factor proteins, plasma prekallikrein/coagulation factor XI and microneme antigen proteins, plant receptor-like protein kinases, and various nematode and leech anti-platelet proteins. Common structural features include two disulfide bonds that link the alpha-helix to the central region of the protein. PAN domains have significant functional versatility, fulfilling diverse biological functions by mediating protein-protein or protein-carbohydrate interactions.
Probab=98.92 E-value=1.5e-09 Score=86.97 Aligned_cols=67 Identities=24% Similarity=0.463 Sum_probs=56.9
Q ss_pred CCCeEEeecCCCCCcccccccchhhHHhhccC---CCceEeEeccC-Ccceeeeeccc-ccccccCCCcceeeEe
Q 008872 339 QDGFFKLETMKVPYFAERSSANEDKCKDQCSN---NCSCKAYAYEI-GVGCMIWTHNL-IDIRKLPSGGTNLYIR 408 (550)
Q Consensus 339 ~~~f~~~~~~~~p~~~~~~~~~~~~C~~~Cl~---nCsC~a~~~~~-g~~C~~~~~~l-~~~~~~~~~~~~~y~r 408 (550)
...|+.+.++++|+ ... .++++|++.|++ ||+|.||+|.+ +.+|++|.+.+ .+++.....+.++|+|
T Consensus 8 ~g~fl~~~~~klpd-~~~--~s~~eC~~~Cl~~~~nCsC~Aya~~~~~~gC~~W~~~l~~d~~~~~~~g~~Ly~r 79 (80)
T cd00129 8 AGTTLIKIALKIKT-TKA--NTADECANRCEKNGLPFSCKAFVFAKARKQCLWFPFNSMSGVRKEFSHGFDLYEN 79 (80)
T ss_pred CCeEEEeecccCCc-ccc--cCHHHHHHHHhcCCCCCCceeeeccCCCCCeEEecCcchhhHHhccCCCceeEeE
Confidence 45788888999998 332 478999999999 99999999974 56899999999 9998887677889987
No 8
>cd01098 PAN_AP_plant Plant PAN/APPLE-like domain; present in plant S-receptor protein kinases and secreted glycoproteins. PAN/APPLE domains fulfill diverse biological functions by mediating protein-protein or protein-carbohydrate interactions. S-receptor protein kinases and S-locus glycoproteins are involved in sporophytic self-incompatibility response in Brassica, one of probably many molecular mechanisms, by which hermaphrodite flowering plants avoid self-fertilization.
Probab=98.83 E-value=4.6e-09 Score=85.45 Aligned_cols=72 Identities=43% Similarity=0.928 Sum_probs=56.2
Q ss_pred CCCeEEeecCCCCCcccc-cccchhhHHhhccCCCceEeEeccC-CcceeeeecccccccccCCCcceeeEeec
Q 008872 339 QDGFFKLETMKVPYFAER-SSANEDKCKDQCSNNCSCKAYAYEI-GVGCMIWTHNLIDIRKLPSGGTNLYIRVA 410 (550)
Q Consensus 339 ~~~f~~~~~~~~p~~~~~-~~~~~~~C~~~Cl~nCsC~a~~~~~-g~~C~~~~~~l~~~~~~~~~~~~~y~r~~ 410 (550)
.++|..+.++++|++... ...++++|+++|++||+|.|+.|.+ +.+|.+|...+.+.......+..+|+|++
T Consensus 11 ~~~f~~~~~~~~~~~~~~~~~~s~~~C~~~Cl~nCsC~a~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~yiKv~ 84 (84)
T cd01098 11 TDGFLKLPDVKLPDNASAITAISLEECREACLSNCSCTAYAYNNGSGGCLLWNGLLNNLRSLSSGGGTLYLRLA 84 (84)
T ss_pred CCEEEEeCCeeCCCchhhhccCCHHHHHHHHhcCCCcceeeecCCCCeEEEEeceecceEeecCCCcEEEEEeC
Confidence 357899999999983222 3348899999999999999999986 45699999888887665444578899874
No 9
>smart00108 B_lectin Bulb-type mannose-specific lectin.
Probab=98.74 E-value=4.4e-08 Score=84.83 Aligned_cols=88 Identities=23% Similarity=0.360 Sum_probs=64.6
Q ss_pred eEEEeeCCcEEEEcCC-ccEEEeeccccCcCCCCceEEEecCCCeEEEeCCCCceeeeecCCCCccccCCCeeccccCCC
Q 008872 92 IFTISEDGNLVVLNGK-KQVHWSSNVSSLANNSNTRAQLLDSGNLVLHDNISQVSIWDSFQEPTDTFYSEMKVSTDLRTG 170 (550)
Q Consensus 92 ~l~l~~~G~L~l~~~~-~~~~W~s~~~~~~~~~~~~~~l~d~GNlvl~~~~~~~~~WqSFd~PTDtlLpgq~l~~~~~tg 170 (550)
++.++.||+||+++.. +.++|++++..+.. ....+.|+++|||||++.+ +.++|+| +|
T Consensus 23 ~~~~q~dgnlV~~~~~~~~~vW~snt~~~~~-~~~~l~l~~dGnLvl~~~~-g~~vW~S-----~t-------------- 81 (114)
T smart00108 23 TLIMQNDYNLILYKSSSRTVVWVANRDNPVS-DSCTLTLQSDGNLVLYDGD-GRVVWSS-----NT-------------- 81 (114)
T ss_pred ccCCCCCEEEEEEECCCCcEEEECCCCCCCC-CCEEEEEeCCCCEEEEeCC-CCEEEEe-----cc--------------
Confidence 4556789999999875 57999999865432 2478999999999999987 6789998 11
Q ss_pred cceEEeeccCCCCCCCceeEEeeccCCCCeEEEEEcCCcceeec
Q 008872 171 KKVQLTSWRSLSNPSIGSFSAGLDSFTIPEVFIWINGTRPYWRS 214 (550)
Q Consensus 171 ~~~~L~S~~s~~~~s~G~y~l~~~~~~~~~~~~~~~~~~~yw~~ 214 (550)
....|.|.+.|+++|+.+++- ....+.|.+
T Consensus 82 ------------~~~~~~~~~~L~ddGnlvl~~--~~~~~~W~S 111 (114)
T smart00108 82 ------------TGANGNYVLVLLDDGNLVIYD--SDGNFLWQS 111 (114)
T ss_pred ------------cCCCCceEEEEeCCCCEEEEC--CCCCEEeCC
Confidence 012456788999999865542 334678875
No 10
>cd00028 B_lectin Bulb-type mannose-specific lectin. The domain contains a three-fold internal repeat (beta-prism architecture). The consensus sequence motif QXDXNXVXY is involved in alpha-D-mannose recognition. Lectins are carbohydrate-binding proteins which specifically recognize diverse carbohydrates and mediate a wide variety of biological processes, such as cell-cell and host-pathogen interactions, serum glycoprotein turnover, and innate immune responses.
Probab=98.67 E-value=9.1e-08 Score=83.11 Aligned_cols=89 Identities=22% Similarity=0.334 Sum_probs=64.8
Q ss_pred EEEee-CCcEEEEcCC-ccEEEeeccccCcCCCCceEEEecCCCeEEEeCCCCceeeeecCCCCccccCCCeeccccCCC
Q 008872 93 FTISE-DGNLVVLNGK-KQVHWSSNVSSLANNSNTRAQLLDSGNLVLHDNISQVSIWDSFQEPTDTFYSEMKVSTDLRTG 170 (550)
Q Consensus 93 l~l~~-~G~L~l~~~~-~~~~W~s~~~~~~~~~~~~~~l~d~GNlvl~~~~~~~~~WqSFd~PTDtlLpgq~l~~~~~tg 170 (550)
+.++. ||+||+++.. +.++|++++..+. .....+.|+++|||||++.+ +.++|+|=-.
T Consensus 24 ~~~q~~dgnlv~~~~~~~~~vW~snt~~~~-~~~~~l~l~~dGnLvl~~~~-g~~vW~S~~~------------------ 83 (116)
T cd00028 24 LIMQSRDYNLILYKGSSRTVVWVANRDNPS-GSSCTLTLQSDGNLVIYDGS-GTVVWSSNTT------------------ 83 (116)
T ss_pred CCCCCCeEEEEEEeCCCCeEEEECCCCCCC-CCCEEEEEecCCCeEEEcCC-CcEEEEeccc------------------
Confidence 44565 9999999875 5799999986542 14678999999999999986 6789987210
Q ss_pred cceEEeeccCCCCCCCceeEEeeccCCCCeEEEEEcCCcceeecCC
Q 008872 171 KKVQLTSWRSLSNPSIGSFSAGLDSFTIPEVFIWINGTRPYWRSGP 216 (550)
Q Consensus 171 ~~~~L~S~~s~~~~s~G~y~l~~~~~~~~~~~~~~~~~~~yw~~g~ 216 (550)
...+.+.+.|+++|+.+++- ....+.|.+..
T Consensus 84 -------------~~~~~~~~~L~ddGnlvl~~--~~~~~~W~Sf~ 114 (116)
T cd00028 84 -------------RVNGNYVLVLLDDGNLVLYD--SDGNFLWQSFD 114 (116)
T ss_pred -------------CCCCceEEEEeCCCCEEEEC--CCCCEEEcCCC
Confidence 02456888999999855542 23567887653
No 11
>PF01453 B_lectin: D-mannose binding lectin; InterPro: IPR001480 A bulb lectin super-family (Amaryllidaceae, Orchidaceae and Aliaceae) contains a ~115-residue-long domain whose overall three dimensional fold is very similar to that of [, ]: Dictyostelium discoideum comitin, an actin binding protein Curculigo latifolia curculin, a sweet tasting and taste-modifying protein This domain generally binds mannose, but in at least one protein, curculin, it is apparently devoid of mannose-binding activity. Each bulb-type lectin domain consists of three sequential beta-sheet subdomains (I, II, III) that are inter-related by pseudo three-fold symmetry. The three subdomains are flat four-stranded, antiparrallel beta-sheets. Together they form a 12-stranded beta-barrel in which the barrel axis coincides with the pseudo 3-fold axis.; GO: 0005529 sugar binding; PDB: 3M7H_A 3M7J_B 3MEZ_D 1DLP_A 1BWU_D 1KJ1_A 1B2P_A 1XD6_A 2DPF_C 2D04_B ....
Probab=98.47 E-value=2.5e-06 Score=73.70 Aligned_cols=99 Identities=26% Similarity=0.435 Sum_probs=68.9
Q ss_pred CeEEeCCCeEEEeeecCCCCCCccEEEEEeecCCCCCceEEEEe-CCCCCCCCCCceEEEeeCCcEEEEcCCccEEEeec
Q 008872 37 ESIISSGSKFKLGFFSPDGNFTNRYIGIWYNKGGSANKTVVWVA-NRNKPLIDSSGIFTISEDGNLVVLNGKKQVHWSSN 115 (550)
Q Consensus 37 ~~l~S~~g~F~~gf~~~~~~~~~~~l~i~~~~~~~~~~~~vW~a-nr~~p~~~~~~~l~l~~~G~L~l~~~~~~~~W~s~ 115 (550)
+.+.+.+|.+.|-|+.+| + |.| |. ...+++|.. +...... ..+.+.|+.||||||+|..+.++|++.
T Consensus 12 ~p~~~~s~~~~L~l~~dG-n-----Lvl-~~----~~~~~iWss~~t~~~~~-~~~~~~L~~~GNlvl~d~~~~~lW~Sf 79 (114)
T PF01453_consen 12 SPLTSSSGNYTLILQSDG-N-----LVL-YD----SNGSVIWSSNNTSGRGN-SGCYLVLQDDGNLVLYDSSGNVLWQSF 79 (114)
T ss_dssp EEEEECETTEEEEEETTS-E-----EEE-EE----TTTEEEEE--S-TTSS--SSEEEEEETTSEEEEEETTSEEEEEST
T ss_pred cccccccccccceECCCC-e-----EEE-Ec----CCCCEEEEecccCCccc-cCeEEEEeCCCCEEEEeecceEEEeec
Confidence 456665699999999988 2 333 22 235679999 4444432 458999999999999999999999984
Q ss_pred cccCcCCCCceEEEec--CCCeEEEeCCCCceeeeecCCC
Q 008872 116 VSSLANNSNTRAQLLD--SGNLVLHDNISQVSIWDSFQEP 153 (550)
Q Consensus 116 ~~~~~~~~~~~~~l~d--~GNlvl~~~~~~~~~WqSFd~P 153 (550)
. .+ ..+.+..++ .||++ +... ..+.|.|=+.|
T Consensus 80 ~-~p---tdt~L~~q~l~~~~~~-~~~~-~~~sw~s~~dp 113 (114)
T PF01453_consen 80 D-YP---TDTLLPGQKLGDGNVT-GKND-SLTSWSSNTDP 113 (114)
T ss_dssp T-SS---S-EEEEEET--TSEEE-EEST-SSEEEESS---
T ss_pred C-CC---ccEEEeccCcccCCCc-cccc-eEEeECCCCCC
Confidence 3 22 267788888 89999 6543 56899987766
No 12
>KOG1025 consensus Epidermal growth factor receptor EGFR and related tyrosine kinases [Signal transduction mechanisms]
Probab=98.39 E-value=4.1e-07 Score=99.17 Aligned_cols=50 Identities=32% Similarity=0.543 Sum_probs=42.0
Q ss_pred cceeccCCCccEEEEEe-CCCC----EEEEEEccc-cCCcCHHHHHHHHHHhhccc
Q 008872 500 ANKLGQGGFGPVYKGKL-QDGQ----EIAVKRLSK-ASGQGQEEFMNEVMIHKDKV 549 (550)
Q Consensus 500 ~~~LG~G~fG~VYKG~L-~~g~----~VAVKrL~~-~s~~~~~eF~~Ev~~i~~l~ 549 (550)
..+||+|+||+||||.+ |.|+ +||||.+.. .+.+..+||+.|+-+|++|+
T Consensus 701 ~kvLGsgAfGtV~kGiw~Pege~vKipVaiKvl~~~t~~~~s~e~LdeAl~masld 756 (1177)
T KOG1025|consen 701 DKVLGSGAFGTVYKGIWIPEGENVKIPVAIKVLIEFTSPKASIELLDEALRMASLD 756 (1177)
T ss_pred hceeccccceeEEeeeEecCCceecceeEEEEeeccCCchhhHHHHHHHHHHhcCC
Confidence 38999999999999987 6654 799999954 45566789999999999985
No 13
>KOG0196 consensus Tyrosine kinase, EPH (ephrin) receptor family [Signal transduction mechanisms]
Probab=97.91 E-value=5.8e-06 Score=90.09 Aligned_cols=66 Identities=24% Similarity=0.461 Sum_probs=49.8
Q ss_pred cccHHHHHHhhcccc---------ccceeccCCCccEEEEEeC--C--CCEEEEEEccccC-CcCHHHHHHHHHHhhccc
Q 008872 484 VFNFEELANATNNFQ---------LANKLGQGGFGPVYKGKLQ--D--GQEIAVKRLSKAS-GQGQEEFMNEVMIHKDKV 549 (550)
Q Consensus 484 ~fs~~eL~~AT~~Fs---------~~~~LG~G~fG~VYKG~L~--~--g~~VAVKrL~~~s-~~~~~eF~~Ev~~i~~l~ 549 (550)
.++|||--.|...|. .+++||.|-||.||+|.|. + ...||||.|+... +...++|+.|+.||++..
T Consensus 609 P~TYEDPnqAvreFakEId~s~i~Ie~VIGaGEFGEVc~GrLk~pgkre~~VAIKTLK~GytekqrrdFL~EAsIMGQFd 688 (996)
T KOG0196|consen 609 PHTYEDPNQAVREFAKEIDPSCVKIEKVIGAGEFGEVCSGRLKLPGKREITVAIKTLKAGYTEKQRRDFLSEASIMGQFD 688 (996)
T ss_pred CccccCccHHHHHhhhhcChhheEEEEEEecccccceecccccCCCCcceeEEEeeeccCccHHHHhhhhhhhhhcccCC
Confidence 466666655554443 3689999999999999983 3 3479999997643 345679999999999854
No 14
>KOG3653 consensus Transforming growth factor beta/activin receptor subfamily of serine/threonine kinases [Signal transduction mechanisms]
Probab=97.77 E-value=3e-05 Score=80.33 Aligned_cols=41 Identities=37% Similarity=0.573 Sum_probs=33.9
Q ss_pred ceeccCCCccEEEEEeCCCCEEEEEEccccCCcCHHHHHHHHHHh
Q 008872 501 NKLGQGGFGPVYKGKLQDGQEIAVKRLSKASGQGQEEFMNEVMIH 545 (550)
Q Consensus 501 ~~LG~G~fG~VYKG~L~~g~~VAVKrL~~~s~~~~~eF~~Ev~~i 545 (550)
++||+|+||.||||.|. ++.||||.+. .+....|.+|=.|-
T Consensus 216 eli~~Grfg~V~KaqL~-~~~VAVKifp---~~~kqs~~~Ek~Iy 256 (534)
T KOG3653|consen 216 ELIGRGRFGCVWKAQLD-NRLVAVKIFP---EQEKQSFQNEKNIY 256 (534)
T ss_pred HHhhcCccceeehhhcc-CceeEEEecC---HHHHHHHHhHHHHH
Confidence 68999999999999995 4999999984 45567788886554
No 15
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=97.77 E-value=9.1e-05 Score=87.66 Aligned_cols=57 Identities=19% Similarity=0.368 Sum_probs=41.5
Q ss_pred ccHHHHHHhhccccccceeccCCCccEEEEEe-CCCCEEEEEEccccCCcCHHHHHHHHHHhhcc
Q 008872 485 FNFEELANATNNFQLANKLGQGGFGPVYKGKL-QDGQEIAVKRLSKASGQGQEEFMNEVMIHKDK 548 (550)
Q Consensus 485 fs~~eL~~AT~~Fs~~~~LG~G~fG~VYKG~L-~~g~~VAVKrL~~~s~~~~~eF~~Ev~~i~~l 548 (550)
++++++.. .|.+.++||+|+||.||||+. .+|..||||+++...... ..|+++|.++
T Consensus 683 ~~~~~~~~---~~~~~~~ig~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~----~~~~~~l~~l 740 (968)
T PLN00113 683 ITINDILS---SLKEENVISRGKKGASYKGKSIKNGMQFVVKEINDVNSIP----SSEIADMGKL 740 (968)
T ss_pred hhHHHHHh---hCCcccEEccCCCeeEEEEEECCCCcEEEEEEccCCcccc----HHHHHHHhhC
Confidence 55666554 467779999999999999987 578999999996443222 2346666654
No 16
>KOG1026 consensus Nerve growth factor receptor TRKA and related tyrosine kinases [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.67 E-value=2.8e-05 Score=85.90 Aligned_cols=49 Identities=29% Similarity=0.491 Sum_probs=41.2
Q ss_pred ceeccCCCccEEEEEeCC------CCEEEEEEccccC-CcCHHHHHHHHHHhhccc
Q 008872 501 NKLGQGGFGPVYKGKLQD------GQEIAVKRLSKAS-GQGQEEFMNEVMIHKDKV 549 (550)
Q Consensus 501 ~~LG~G~fG~VYKG~L~~------g~~VAVKrL~~~s-~~~~~eF~~Ev~~i~~l~ 549 (550)
.+||+|.||.||+|+..+ .+.||||.|+... .|..++|+.|+++|+++.
T Consensus 492 ~eLGegaFGkVf~a~~~~l~p~~~~~lVAVK~LKd~a~~~~~~dF~REaeLla~l~ 547 (774)
T KOG1026|consen 492 EELGEGAFGKVFLAEAYGLLPGQDEQLVAVKALKDKAENQARQDFRREAELLAELQ 547 (774)
T ss_pred hhhcCchhhhhhhhhccCCCCCccceehhHhhhcccccHHHHHHHHHHHHHHHhcc
Confidence 789999999999998843 4589999996544 447889999999999874
No 17
>smart00473 PAN_AP divergent subfamily of APPLE domains. Apple-like domains present in Plasminogen, C. elegans hypothetical ORFs and the extracellular portion of plant receptor-like protein kinases. Predicted to possess protein- and/or carbohydrate-binding functions.
Probab=97.67 E-value=0.0001 Score=58.43 Aligned_cols=68 Identities=41% Similarity=0.914 Sum_probs=47.5
Q ss_pred CCeEEeecCCCCCcccc--cccchhhHHhhccC-CCceEeEeccC-Ccceeeee-cccccccccCCCcceeeE
Q 008872 340 DGFFKLETMKVPYFAER--SSANEDKCKDQCSN-NCSCKAYAYEI-GVGCMIWT-HNLIDIRKLPSGGTNLYI 407 (550)
Q Consensus 340 ~~f~~~~~~~~p~~~~~--~~~~~~~C~~~Cl~-nCsC~a~~~~~-g~~C~~~~-~~l~~~~~~~~~~~~~y~ 407 (550)
..|..+.++.++++... ...++++|++.|++ +|.|.++.|.. +..|.+|. ..+.+....+..+...|.
T Consensus 4 ~~f~~~~~~~l~~~~~~~~~~~s~~~C~~~C~~~~~~C~s~~y~~~~~~C~l~~~~~~~~~~~~~~~~~~~y~ 76 (78)
T smart00473 4 DCFVRLPNTKLPGFSRIVISVASLEECASKCLNSNCSCRSFTYNNGTKGCLLWSESSLGDARLFPSGGVDLYE 76 (78)
T ss_pred ceeEEecCccCCCCcceeEcCCCHHHHHHHhCCCCCceEEEEEcCCCCEEEEeeCCccccceecccCCceeEE
Confidence 45778888888752221 23389999999999 99999999975 45699998 666666533333444444
No 18
>KOG0193 consensus Serine/threonine protein kinase RAF [Signal transduction mechanisms]
Probab=97.55 E-value=6.3e-05 Score=80.17 Aligned_cols=54 Identities=33% Similarity=0.594 Sum_probs=42.1
Q ss_pred ccHHHHHHhhccccccceeccCCCccEEEEEeCCCCEEEEEEcccc--CCcCHHHHHHHHHHhhc
Q 008872 485 FNFEELANATNNFQLANKLGQGGFGPVYKGKLQDGQEIAVKRLSKA--SGQGQEEFMNEVMIHKD 547 (550)
Q Consensus 485 fs~~eL~~AT~~Fs~~~~LG~G~fG~VYKG~L~~g~~VAVKrL~~~--s~~~~~eF~~Ev~~i~~ 547 (550)
+.++|++.+ ..||+|.||+||||.+-+ .||||.|+.. +....++|++||.++-+
T Consensus 389 Ip~~ev~l~-------~rIGsGsFGtV~Rg~whG--dVAVK~Lnv~~pt~~qlqaFKnEVa~lkk 444 (678)
T KOG0193|consen 389 IPPEEVLLG-------ERIGSGSFGTVYRGRWHG--DVAVKLLNVDDPTPEQLQAFKNEVAVLKK 444 (678)
T ss_pred cCHHHhhcc-------ceeccccccceeeccccc--ceEEEEEecCCCCHHHHHHHHHHHHHHhh
Confidence 455555544 789999999999999954 5999999543 34456899999998866
No 19
>cd06624 STKc_ASK Catalytic domain of the Protein Serine/Threonine Kinase, Apoptosis signal-regulating kinase. Serine/threonine kinases (STKs), Apoptosis signal-regulating kinase (ASK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ASK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Subfamily members are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) and include ASK1, ASK2, and MAPKKK15. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. ASK1 (also called MAPKKK5) functions in the c-Jun N-terminal kina
Probab=97.45 E-value=0.00012 Score=72.54 Aligned_cols=61 Identities=20% Similarity=0.274 Sum_probs=50.9
Q ss_pred HHHHhhccccccceeccCCCccEEEEEeC-CCCEEEEEEccccCCcCHHHHHHHHHHhhccc
Q 008872 489 ELANATNNFQLANKLGQGGFGPVYKGKLQ-DGQEIAVKRLSKASGQGQEEFMNEVMIHKDKV 549 (550)
Q Consensus 489 eL~~AT~~Fs~~~~LG~G~fG~VYKG~L~-~g~~VAVKrL~~~s~~~~~eF~~Ev~~i~~l~ 549 (550)
|++.+++++....+||+|+||.||+|... +++.||||.+.....+..++|.+|+.++.++.
T Consensus 2 ~~~~~~~~~~~~~~lg~g~~g~v~~~~~~~~~~~v~~k~~~~~~~~~~~~~~~e~~~l~~l~ 63 (268)
T cd06624 2 EYEYEYDENGERVVLGKGTYGIVYAARDLSTQVRIAIKEIPERDSRYVQPLHEEIALHSYLK 63 (268)
T ss_pred CcccccccCCceEEEecCCceEEEEeEecCCCcEEEEEEecCCCHHHHHHHHHHHHHHHhcC
Confidence 45678888988899999999999999864 57789999986655556778999999998764
No 20
>PLN03224 probable serine/threonine protein kinase; Provisional
Probab=97.34 E-value=0.0002 Score=77.77 Aligned_cols=49 Identities=29% Similarity=0.616 Sum_probs=36.6
Q ss_pred hhccccccceeccCCCccEEEEEe-----------------CCCCEEEEEEccccCCcCHHHHHHH
Q 008872 493 ATNNFQLANKLGQGGFGPVYKGKL-----------------QDGQEIAVKRLSKASGQGQEEFMNE 541 (550)
Q Consensus 493 AT~~Fs~~~~LG~G~fG~VYKG~L-----------------~~g~~VAVKrL~~~s~~~~~eF~~E 541 (550)
.+++|...++||+|+||+||||.+ .+++.||||++........++|.+|
T Consensus 143 ~~d~F~i~~~LG~GgFG~VYkG~~~~~~~~~v~~~~~~~~~~~~r~VAVK~l~~~~~~~~~~fl~e 208 (507)
T PLN03224 143 SSDDFQLRDKLGGGNFGITFEGLRLQADDQGVTQRSKLTAEQKKRRVVLKRVNMDRQGVRQDFLKT 208 (507)
T ss_pred cccCceEeeEeecCCCeEEEEEEecccccchhhhhccccccccCceEEEEEecccchhhHHHHHhh
Confidence 356788889999999999999975 2356899999965433334556554
No 21
>KOG1094 consensus Discoidin domain receptor DDR1 [Signal transduction mechanisms]
Probab=97.30 E-value=0.00069 Score=72.16 Aligned_cols=49 Identities=27% Similarity=0.460 Sum_probs=43.0
Q ss_pred ceeccCCCccEEEEEeCCCCEEEEEEccccCCcC-HHHHHHHHHHhhccc
Q 008872 501 NKLGQGGFGPVYKGKLQDGQEIAVKRLSKASGQG-QEEFMNEVMIHKDKV 549 (550)
Q Consensus 501 ~~LG~G~fG~VYKG~L~~g~~VAVKrL~~~s~~~-~~eF~~Ev~~i~~l~ 549 (550)
++||+|-||.|-..++.++..||||+|+.....+ .++|..|+++|++|.
T Consensus 544 ekiGeGqFGEVhLCeveg~lkVAVK~Lr~~a~~~~r~~F~kEIkiLsqLk 593 (807)
T KOG1094|consen 544 EKIGEGQFGEVHLCEVEGPLKVAVKILRPDATKNARNDFLKEIKILSRLK 593 (807)
T ss_pred hhhcCcccceeEEEEecCceEEEEeecCcccchhHHHHHHHHHHHHhccC
Confidence 7999999999999999888999999997654444 589999999999974
No 22
>KOG0595 consensus Serine/threonine-protein kinase involved in autophagy [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=97.14 E-value=0.00036 Score=71.36 Aligned_cols=50 Identities=32% Similarity=0.578 Sum_probs=39.8
Q ss_pred cceeccCCCccEEEEEeC-CCCEEEEEEcccc--CCcCHHHHHHHHHHhhccc
Q 008872 500 ANKLGQGGFGPVYKGKLQ-DGQEIAVKRLSKA--SGQGQEEFMNEVMIHKDKV 549 (550)
Q Consensus 500 ~~~LG~G~fG~VYKG~L~-~g~~VAVKrL~~~--s~~~~~eF~~Ev~~i~~l~ 549 (550)
...||+|+|++||||... .+++||||++... .....+-...|+++|.+|.
T Consensus 15 ~~~iG~GsfavVykg~h~~~~~~VAIK~i~~~~l~~k~~e~L~~Ei~iLkel~ 67 (429)
T KOG0595|consen 15 SREIGSGSFAVVYKGRHKKSGTEVAIKCIAKKKLNKKLVELLLSEIKILKELK 67 (429)
T ss_pred hhhccCcceEEEEEeEeccCCceEEeeeehhhccCHHHHHHHHHHHHHHHhcC
Confidence 366999999999999984 4789999999654 3344556889999998764
No 23
>KOG0194 consensus Protein tyrosine kinase [Signal transduction mechanisms]
Probab=96.91 E-value=0.00086 Score=71.49 Aligned_cols=49 Identities=39% Similarity=0.615 Sum_probs=38.9
Q ss_pred ceeccCCCccEEEEEeCC--C--CE-EEEEEccc---cCCcCHHHHHHHHHHhhccc
Q 008872 501 NKLGQGGFGPVYKGKLQD--G--QE-IAVKRLSK---ASGQGQEEFMNEVMIHKDKV 549 (550)
Q Consensus 501 ~~LG~G~fG~VYKG~L~~--g--~~-VAVKrL~~---~s~~~~~eF~~Ev~~i~~l~ 549 (550)
++||+|+||.||+|+|.- + .. ||||.... ......+||++|+++|.++.
T Consensus 163 kkLGeGaFGeV~~G~l~~~~~~~~~~VAvK~~k~~~~~~~~~~~e~m~EArvMr~l~ 219 (474)
T KOG0194|consen 163 KKLGEGAFGEVFKGKLKLKNGFKVVPVAVKTTKGSSELTKEQIKEFMKEARVMRQLN 219 (474)
T ss_pred ceeecccccEEEEEEEEecCCceeeeeEEEeecccccccHHHHHHHHHHHHHHHhCC
Confidence 799999999999999943 3 23 89999863 23445789999999998764
No 24
>KOG0192 consensus Tyrosine kinase specific for activated (GTP-bound) p21cdc42Hs [Signal transduction mechanisms]
Probab=96.90 E-value=0.0011 Score=69.10 Aligned_cols=49 Identities=33% Similarity=0.495 Sum_probs=38.8
Q ss_pred ceeccCCCccEEEEEeCCCCEEEEEEccccCCcC--HHHHHHHHHHhhccc
Q 008872 501 NKLGQGGFGPVYKGKLQDGQEIAVKRLSKASGQG--QEEFMNEVMIHKDKV 549 (550)
Q Consensus 501 ~~LG~G~fG~VYKG~L~~g~~VAVKrL~~~s~~~--~~eF~~Ev~~i~~l~ 549 (550)
+.||+|+||+||||.+.+-..||||++....... .++|..|+.+|.+|.
T Consensus 47 ~~iG~G~~g~V~~~~~~g~~~vavK~~~~~~~~~~~~~~f~~E~~il~~l~ 97 (362)
T KOG0192|consen 47 EVLGSGSFGTVYKGKWRGTDVVAVKIISDPDFDDESRKAFRREASLLSRLR 97 (362)
T ss_pred hhcccCCceeEEEEEeCCceeEEEEEecchhcChHHHHHHHHHHHHHHhCC
Confidence 5699999999999999554449999995432221 569999999999875
No 25
>KOG1095 consensus Protein tyrosine kinase [Signal transduction mechanisms]
Probab=96.81 E-value=0.0011 Score=76.29 Aligned_cols=50 Identities=36% Similarity=0.650 Sum_probs=41.4
Q ss_pred cceeccCCCccEEEEEeCC--CC----EEEEEEcccc-CCcCHHHHHHHHHHhhccc
Q 008872 500 ANKLGQGGFGPVYKGKLQD--GQ----EIAVKRLSKA-SGQGQEEFMNEVMIHKDKV 549 (550)
Q Consensus 500 ~~~LG~G~fG~VYKG~L~~--g~----~VAVKrL~~~-s~~~~~eF~~Ev~~i~~l~ 549 (550)
...||+|+||.||+|.+.+ |. .||||.|.+. +.+...+|+.|..+|++++
T Consensus 697 ~~~lG~G~FG~VY~g~~~~~~~~~~~~~vaiK~l~~~~~~~~~~~Fl~Ea~~m~~f~ 753 (1025)
T KOG1095|consen 697 LRVLGKGAFGEVYEGTYSDVPGSVSPIQVAVKSLKRLSSEQEVSDFLKEALLMSKFD 753 (1025)
T ss_pred eeeeccccccceEEEEEecCCCCccceEEEEEeccccCCHHHHHHHHHHHHHHhcCC
Confidence 3899999999999999954 33 4999999664 4566789999999999864
No 26
>cd05067 PTKc_Lck_Blk Catalytic domain of the Protein Tyrosine Kinases, Lymphocyte-specific kinase and Blk. Protein Tyrosine Kinase (PTK) family; Lck and Blk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lck (lymphocyte-specific kinase) and Blk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Sr
Probab=96.81 E-value=0.0019 Score=63.60 Aligned_cols=50 Identities=32% Similarity=0.549 Sum_probs=42.2
Q ss_pred ccceeccCCCccEEEEEeCCCCEEEEEEccccCCcCHHHHHHHHHHhhccc
Q 008872 499 LANKLGQGGFGPVYKGKLQDGQEIAVKRLSKASGQGQEEFMNEVMIHKDKV 549 (550)
Q Consensus 499 ~~~~LG~G~fG~VYKG~L~~g~~VAVKrL~~~s~~~~~eF~~Ev~~i~~l~ 549 (550)
-.++||+|+||.||++...+++.||||++... ....++|.+|+.++.++.
T Consensus 10 ~~~~ig~G~~g~v~~~~~~~~~~~a~K~~~~~-~~~~~~~~~E~~~l~~l~ 59 (260)
T cd05067 10 LVKKLGAGQFGEVWMGYYNGHTKVAIKSLKQG-SMSPEAFLAEANLMKQLQ 59 (260)
T ss_pred eeeeeccCccceEEeeecCCCceEEEEEecCC-CCcHHHHHHHHHHHHhcC
Confidence 34799999999999999999999999999643 345678999999998763
No 27
>PRK09188 serine/threonine protein kinase; Provisional
Probab=96.80 E-value=0.0015 Score=68.15 Aligned_cols=56 Identities=20% Similarity=0.176 Sum_probs=42.3
Q ss_pred hccccccceeccCCCccEEEEEeC--CCCEEEEEEccccC-----CcCHHHHHHHHHHhhccc
Q 008872 494 TNNFQLANKLGQGGFGPVYKGKLQ--DGQEIAVKRLSKAS-----GQGQEEFMNEVMIHKDKV 549 (550)
Q Consensus 494 T~~Fs~~~~LG~G~fG~VYKG~L~--~g~~VAVKrL~~~s-----~~~~~eF~~Ev~~i~~l~ 549 (550)
.+.|...++||+|+||+||+|... +++.||||++.... ....+.|.+|++++.+|.
T Consensus 17 ~~~Y~~~~~IG~G~fg~Vy~a~~~~~~~~~vAiK~~~~~~~~~~~~~~~~~~~~E~~iL~~L~ 79 (365)
T PRK09188 17 SARFVETAVLKRDVFSTVERGYFAGDPGTARAVRRRVSEVPWWSKPLARHLAAREIRALKTVR 79 (365)
T ss_pred cCCceEccEEeecCcEEEEEEEEcCCCCeEEEEEEecccccccccHHHHHHHHHHHHHHHhcc
Confidence 345666789999999999999874 57888999974221 112456999999998763
No 28
>PHA02988 hypothetical protein; Provisional
Probab=96.79 E-value=0.0019 Score=64.98 Aligned_cols=63 Identities=13% Similarity=0.212 Sum_probs=48.0
Q ss_pred CcccccHHHHHHhhccccccceeccCCCccEEEEEeCCCCEEEEEEccccCCcC---HHHHHHHHHHhhccc
Q 008872 481 DLLVFNFEELANATNNFQLANKLGQGGFGPVYKGKLQDGQEIAVKRLSKASGQG---QEEFMNEVMIHKDKV 549 (550)
Q Consensus 481 ~~~~fs~~eL~~AT~~Fs~~~~LG~G~fG~VYKG~L~~g~~VAVKrL~~~s~~~---~~eF~~Ev~~i~~l~ 549 (550)
..+.++.++|... +...||+|++|.||||.+ +|+.||||++....... .+.|.+|+.+|.++.
T Consensus 11 ~~~~i~~~~i~~~-----~~~~i~~g~~~~v~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~ 76 (283)
T PHA02988 11 DIKCIESDDIDKY-----TSVLIKENDQNSIYKGIF-NNKEVIIRTFKKFHKGHKVLIDITENEIKNLRRID 76 (283)
T ss_pred cceecCHHHcCCC-----CCeEEeeCCceEEEEEEE-CCEEEEEEeccccccccHHHHHHHHHHHHHHHhcC
Confidence 3445677777533 237899999999999998 78999999996543333 367889999998874
No 29
>cd05068 PTKc_Frk_like Catalytic domain of Fyn-related kinase-like Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family; Human Fyn-related kinase (Frk) and similar proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Frk and Srk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins a
Probab=96.68 E-value=0.0023 Score=63.06 Aligned_cols=54 Identities=33% Similarity=0.534 Sum_probs=44.0
Q ss_pred ccccccceeccCCCccEEEEEeCCCCEEEEEEccccCCcCHHHHHHHHHHhhccc
Q 008872 495 NNFQLANKLGQGGFGPVYKGKLQDGQEIAVKRLSKASGQGQEEFMNEVMIHKDKV 549 (550)
Q Consensus 495 ~~Fs~~~~LG~G~fG~VYKG~L~~g~~VAVKrL~~~s~~~~~eF~~Ev~~i~~l~ 549 (550)
+.|...++||+|++|.||+|...+++.||||.+... ....++|.+|+.++.++.
T Consensus 6 ~~~~~~~~lg~g~~~~v~~~~~~~~~~v~iK~~~~~-~~~~~~~~~e~~~l~~l~ 59 (261)
T cd05068 6 TSIQLLRKLGAGQFGEVWEGLWNNTTPVAVKTLKPG-TMDPKDFLAEAQIMKKLR 59 (261)
T ss_pred hheeeEEEecccCCccEEEEEecCCeEEEEEeeCCC-cccHHHHHHHHHHHHHCC
Confidence 345556899999999999999888889999998643 345788999999998763
No 30
>cd07879 STKc_p38delta_MAPK13 Catalytic domain of the Serine/Threonine Kinase, p38delta Mitogen-Activated Protein Kinase. Serine/Threonine Kinases (STKs), p38delta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38delta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38delta, also called MAPK13
Probab=96.55 E-value=0.0041 Score=64.32 Aligned_cols=64 Identities=22% Similarity=0.369 Sum_probs=47.2
Q ss_pred cHHHHHHhh----ccccccceeccCCCccEEEEEe-CCCCEEEEEEcccc--CCcCHHHHHHHHHHhhccc
Q 008872 486 NFEELANAT----NNFQLANKLGQGGFGPVYKGKL-QDGQEIAVKRLSKA--SGQGQEEFMNEVMIHKDKV 549 (550)
Q Consensus 486 s~~eL~~AT----~~Fs~~~~LG~G~fG~VYKG~L-~~g~~VAVKrL~~~--s~~~~~eF~~Ev~~i~~l~ 549 (550)
+.+|+.+++ +.|...+.||+|+||.||+|+. .+|+.||||++... .....+.+..|+.++.++.
T Consensus 2 ~~~~~~~~~~~~~~~y~~~~~ig~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~ 72 (342)
T cd07879 2 YREEVNKTVWELPERYTSLKQVGSGAYGSVCSAIDKRTGEKVAIKKLSRPFQSEIFAKRAYRELTLLKHMQ 72 (342)
T ss_pred chhhhhhhhhccccceEEEEEeeecCCeEEEEEEeCCCCcEEEEEEecCccccccchhHHHHHHHHHHhcC
Confidence 344555553 5677778999999999999986 46899999998542 2223456889999988763
No 31
>KOG4236 consensus Serine/threonine protein kinase PKC mu/PKD and related proteins [Signal transduction mechanisms]
Probab=96.54 E-value=0.0023 Score=67.39 Aligned_cols=52 Identities=37% Similarity=0.599 Sum_probs=43.4
Q ss_pred ccccceeccCCCccEEEEEe-CCCCEEEEEEcccc--CCcCHHHHHHHHHHhhccc
Q 008872 497 FQLANKLGQGGFGPVYKGKL-QDGQEIAVKRLSKA--SGQGQEEFMNEVMIHKDKV 549 (550)
Q Consensus 497 Fs~~~~LG~G~fG~VYKG~L-~~g~~VAVKrL~~~--s~~~~~eF~~Ev~~i~~l~ 549 (550)
|.+ ++||.|-||+||-|+- ..|+.||||.+++. ...++.+.++||.|+.++.
T Consensus 567 f~d-evLGSGQFG~VYgg~hRktGrdVAvKvIdKlrFp~kqesqlR~EVaILq~l~ 621 (888)
T KOG4236|consen 567 FAD-EVLGSGQFGTVYGGKHRKTGRDVAVKVIDKLRFPTKQESQLRNEVAILQNLH 621 (888)
T ss_pred hhH-hhccCCcceeeecceecccCceeeeeeeecccCCCchHHHHHHHHHHHHhcC
Confidence 554 7999999999999988 46999999999653 4566788999999998763
No 32
>KOG2052 consensus Activin A type IB receptor, serine/threonine protein kinase [Signal transduction mechanisms]
Probab=96.51 E-value=0.002 Score=66.67 Aligned_cols=45 Identities=31% Similarity=0.652 Sum_probs=34.6
Q ss_pred ccccceeccCCCccEEEEEeCCCCEEEEEEccccCCcCHHHHHHHHHHh
Q 008872 497 FQLANKLGQGGFGPVYKGKLQDGQEIAVKRLSKASGQGQEEFMNEVMIH 545 (550)
Q Consensus 497 Fs~~~~LG~G~fG~VYKG~L~~g~~VAVKrL~~~s~~~~~eF~~Ev~~i 545 (550)
..-.+.||+|.||.|++|.+ .|+.||||.+.. ..++.+.+|.++-
T Consensus 213 I~L~e~IGkGRyGEVwrG~w-rGe~VAVKiF~s---rdE~SWfrEtEIY 257 (513)
T KOG2052|consen 213 IVLQEIIGKGRFGEVWRGRW-RGEDVAVKIFSS---RDERSWFRETEIY 257 (513)
T ss_pred eEEEEEecCccccceeeccc-cCCceEEEEecc---cchhhhhhHHHHH
Confidence 33447899999999999999 578899999843 3466677776653
No 33
>cd05034 PTKc_Src_like Catalytic domain of Src kinase-like Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family; Src kinase subfamily; catalytic (c) domain. Src subfamily members include Src, Lck, Hck, Blk, Lyn, Fgr, Fyn, Yrk, and Yes. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) proteins are cytoplasmic (or non-receptor) tyr kinases which are anchored to the plasma membrane. They contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-t
Probab=96.47 E-value=0.0047 Score=60.71 Aligned_cols=53 Identities=34% Similarity=0.548 Sum_probs=43.5
Q ss_pred cccccceeccCCCccEEEEEeCCCCEEEEEEccccCCcCHHHHHHHHHHhhccc
Q 008872 496 NFQLANKLGQGGFGPVYKGKLQDGQEIAVKRLSKASGQGQEEFMNEVMIHKDKV 549 (550)
Q Consensus 496 ~Fs~~~~LG~G~fG~VYKG~L~~g~~VAVKrL~~~s~~~~~eF~~Ev~~i~~l~ 549 (550)
+|...++||+|+||.||++...+++.||||.+... ....++|.+|+.++.++.
T Consensus 7 ~~~i~~~ig~g~~~~v~~~~~~~~~~~~vK~~~~~-~~~~~~~~~e~~~l~~l~ 59 (261)
T cd05034 7 SLKLERKLGAGQFGEVWMGTWNGTTKVAVKTLKPG-TMSPEAFLQEAQIMKKLR 59 (261)
T ss_pred heeeeeeeccCcceEEEEEEEcCCceEEEEEecCC-ccCHHHHHHHHHHHhhCC
Confidence 35555899999999999999988889999999643 345678999999988764
No 34
>cd05072 PTKc_Lyn Catalytic domain of the Protein Tyrosine Kinase, Lyn. Protein Tyrosine Kinase (PTK) family; Lyn kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lyn is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth fa
Probab=96.46 E-value=0.0041 Score=61.16 Aligned_cols=52 Identities=31% Similarity=0.530 Sum_probs=42.6
Q ss_pred ccccceeccCCCccEEEEEeCCCCEEEEEEccccCCcCHHHHHHHHHHhhccc
Q 008872 497 FQLANKLGQGGFGPVYKGKLQDGQEIAVKRLSKASGQGQEEFMNEVMIHKDKV 549 (550)
Q Consensus 497 Fs~~~~LG~G~fG~VYKG~L~~g~~VAVKrL~~~s~~~~~eF~~Ev~~i~~l~ 549 (550)
|.-.++||+|+||.||+|...+++.||||++... ....+.|.+|+.++.++.
T Consensus 8 ~~~~~~lg~g~~g~v~~~~~~~~~~v~iK~~~~~-~~~~~~~~~e~~~l~~l~ 59 (261)
T cd05072 8 IKLVKKLGAGQFGEVWMGYYNNSTKVAVKTLKPG-TMSVQAFLEEANLMKTLQ 59 (261)
T ss_pred eEEeeecCCcCCceEEEEEecCCceEEEEEccCC-chhHHHHHHHHHHHHhCC
Confidence 4444899999999999999988899999998543 334678999999998763
No 35
>PTZ00284 protein kinase; Provisional
Probab=96.45 E-value=0.0024 Score=69.25 Aligned_cols=60 Identities=22% Similarity=0.293 Sum_probs=44.5
Q ss_pred HHHHHhhccccccceeccCCCccEEEEEeC-CCCEEEEEEccccCCcCHHHHHHHHHHhhcc
Q 008872 488 EELANATNNFQLANKLGQGGFGPVYKGKLQ-DGQEIAVKRLSKASGQGQEEFMNEVMIHKDK 548 (550)
Q Consensus 488 ~eL~~AT~~Fs~~~~LG~G~fG~VYKG~L~-~g~~VAVKrL~~~s~~~~~eF~~Ev~~i~~l 548 (550)
+++...++.|...++||+|+||+||++... .++.||||+++.. ....+++..|+.++.++
T Consensus 122 ~~~~~~~~~y~i~~~lG~G~fg~V~~a~~~~~~~~vAvK~i~~~-~~~~~~~~~e~~~l~~l 182 (467)
T PTZ00284 122 EDIDVSTQRFKILSLLGEGTFGKVVEAWDRKRKEYCAVKIVRNV-PKYTRDAKIEIQFMEKV 182 (467)
T ss_pred CccccCCCcEEEEEEEEeccCEEEEEEEEcCCCeEEEEEEEecc-hhhHHHHHHHHHHHHHH
Confidence 455556777888899999999999999874 4788999999543 23345666777766554
No 36
>cd05064 PTKc_EphR_A10 Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A10. Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA10 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchor
Probab=96.43 E-value=0.0036 Score=62.05 Aligned_cols=53 Identities=21% Similarity=0.408 Sum_probs=40.3
Q ss_pred ccccceeccCCCccEEEEEeC----CCCEEEEEEccccC-CcCHHHHHHHHHHhhccc
Q 008872 497 FQLANKLGQGGFGPVYKGKLQ----DGQEIAVKRLSKAS-GQGQEEFMNEVMIHKDKV 549 (550)
Q Consensus 497 Fs~~~~LG~G~fG~VYKG~L~----~g~~VAVKrL~~~s-~~~~~eF~~Ev~~i~~l~ 549 (550)
|.-.++||+|+||.||+|.+. .+..||+|.++... ....++|++|+.++.++.
T Consensus 7 ~~~~~~ig~G~fg~V~~~~~~~~~~~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~ 64 (266)
T cd05064 7 IKIERILGTGRFGELCRGCLKLPSKRELPVAIHTLRAGCSDKQRRGFLAEALTLGQFD 64 (266)
T ss_pred eEEeeeecccCCCeEEEEEEecCCCceeeEEEEecCCCCCHHHHHHHHHHHHHHhcCC
Confidence 444589999999999999873 35689999996432 223467999999998763
No 37
>cd05148 PTKc_Srm_Brk Catalytic domain of the Protein Tyrosine Kinases, Srm and Brk. Protein Tyrosine Kinase (PTK) family; Src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites (Srm) and breast tumor kinase (Brk, also called protein tyrosine kinase 6); catalytic (c) domains. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Srm and Brk are a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases in general contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr; they are activated by autophosphorylation at the tyr kinase dom
Probab=96.42 E-value=0.0025 Score=62.70 Aligned_cols=54 Identities=33% Similarity=0.487 Sum_probs=44.6
Q ss_pred cccccceeccCCCccEEEEEeCCCCEEEEEEccccCCcCHHHHHHHHHHhhccc
Q 008872 496 NFQLANKLGQGGFGPVYKGKLQDGQEIAVKRLSKASGQGQEEFMNEVMIHKDKV 549 (550)
Q Consensus 496 ~Fs~~~~LG~G~fG~VYKG~L~~g~~VAVKrL~~~s~~~~~eF~~Ev~~i~~l~ 549 (550)
+|.-.++||+|+||.||+|...++..+|+|.+........+++..|+.++.++.
T Consensus 7 ~y~~~~~ig~g~~~~vy~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~l~ 60 (261)
T cd05148 7 EFTLERKLGSGYFGEVWEGLWKNRVRVAIKILKSDDLLKQQDFQKEVQALKRLR 60 (261)
T ss_pred HHHHhhhhccCCCccEEEeEecCCCcEEEEeccccchhhHHHHHHHHHHHhcCC
Confidence 344458999999999999999889999999997655545678999999988764
No 38
>cd05108 PTKc_EGFR Catalytic domain of the Protein Tyrosine Kinase, Epidermal Growth Factor Receptor. Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EGFR (HER1, ErbB1) is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphor
Probab=96.42 E-value=0.0035 Score=63.95 Aligned_cols=53 Identities=34% Similarity=0.614 Sum_probs=40.8
Q ss_pred ccccceeccCCCccEEEEEeC-CCC----EEEEEEcccc-CCcCHHHHHHHHHHhhccc
Q 008872 497 FQLANKLGQGGFGPVYKGKLQ-DGQ----EIAVKRLSKA-SGQGQEEFMNEVMIHKDKV 549 (550)
Q Consensus 497 Fs~~~~LG~G~fG~VYKG~L~-~g~----~VAVKrL~~~-s~~~~~eF~~Ev~~i~~l~ 549 (550)
|...++||+|+||.||||+.. +|. .||||++... .....++|.+|+.++.++.
T Consensus 9 f~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~ 67 (316)
T cd05108 9 FKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVD 67 (316)
T ss_pred ceeeeeeecCCCceEEEEEEecCCCccceeEEEEeccccCCHHHHHHHHHHHHHHHhCC
Confidence 666789999999999999863 344 3899998643 2334578999999988763
No 39
>cd06637 STKc_TNIK Catalytic domain of the Protein Serine/Threonine Kinase, Traf2- and Nck-interacting kinase. Serine/threonine kinases (STKs), Traf2- and Nck-interacting kinase (TNIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TNIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to mitogen-activated protein kinase (MAPK), kinase kinase kinase 4 (MAP4K4), and MAP4K6. MAP4Ks participate in some MAPK signaling pathways by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). TNIK is an effector of Rap2, a small GTP-binding protein from the Ras family. TNIK specifically activ
Probab=96.39 E-value=0.0032 Score=62.28 Aligned_cols=56 Identities=32% Similarity=0.572 Sum_probs=44.4
Q ss_pred HhhccccccceeccCCCccEEEEEeC-CCCEEEEEEccccCCcCHHHHHHHHHHhhcc
Q 008872 492 NATNNFQLANKLGQGGFGPVYKGKLQ-DGQEIAVKRLSKASGQGQEEFMNEVMIHKDK 548 (550)
Q Consensus 492 ~AT~~Fs~~~~LG~G~fG~VYKG~L~-~g~~VAVKrL~~~s~~~~~eF~~Ev~~i~~l 548 (550)
.|++.|...++||+|+||.||+|... .++.||||++... .....++..|+.++.++
T Consensus 3 ~~~~~y~~~~~lg~g~~g~vy~~~~~~~~~~~aik~~~~~-~~~~~~~~~e~~~l~~~ 59 (272)
T cd06637 3 DPAGIFELVELVGNGTYGQVYKGRHVKTGQLAAIKVMDVT-GDEEEEIKQEINMLKKY 59 (272)
T ss_pred ChhhhhhHHHheeecCCeEEEEEEEcCCCcEEEEEEEEcC-CccHHHHHHHHHHHHHh
Confidence 45566666789999999999999875 4789999998643 34567899999888765
No 40
>cd05102 PTKc_VEGFR3 Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 3. Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 3 (VEGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR3 (or Flt4) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. V
Probab=96.35 E-value=0.0026 Score=65.51 Aligned_cols=52 Identities=27% Similarity=0.441 Sum_probs=39.0
Q ss_pred ccccceeccCCCccEEEEEe------CCCCEEEEEEccccCC-cCHHHHHHHHHHhhcc
Q 008872 497 FQLANKLGQGGFGPVYKGKL------QDGQEIAVKRLSKASG-QGQEEFMNEVMIHKDK 548 (550)
Q Consensus 497 Fs~~~~LG~G~fG~VYKG~L------~~g~~VAVKrL~~~s~-~~~~eF~~Ev~~i~~l 548 (550)
|.-.++||+|+||.||+|.. ..+..||||++..... ...+.|.+|+.++.++
T Consensus 9 ~~~~~~lG~G~fg~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l 67 (338)
T cd05102 9 LRLGKVLGHGAFGKVVEASAFGIDKKSSCNTVAVKMLKEGATASEHKALMSELKILIHI 67 (338)
T ss_pred ceeeeEeccCCcceEEEEEEeccCCcccchhhheeccccccchHHHHHHHHHHHHHHHh
Confidence 44448999999999999974 2356899999964322 2346799999998876
No 41
>cd05096 PTKc_DDR1 Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 1. Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 1 (DDR1) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR1 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR1 binds to all collagens tested to date (types I-IV). It is widely expressed in many tissues. It is abundant in the brain and is also found in k
Probab=96.27 E-value=0.0049 Score=62.39 Aligned_cols=51 Identities=29% Similarity=0.424 Sum_probs=38.4
Q ss_pred ccceeccCCCccEEEEEeCC-----------------CCEEEEEEccccC-CcCHHHHHHHHHHhhccc
Q 008872 499 LANKLGQGGFGPVYKGKLQD-----------------GQEIAVKRLSKAS-GQGQEEFMNEVMIHKDKV 549 (550)
Q Consensus 499 ~~~~LG~G~fG~VYKG~L~~-----------------g~~VAVKrL~~~s-~~~~~eF~~Ev~~i~~l~ 549 (550)
..++||+|+||.||++...+ +..||||.+.... ....++|.+|+.++.++.
T Consensus 9 ~~~~lg~G~fg~V~~~~~~~~~~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~ 77 (304)
T cd05096 9 FKEKLGEGQFGEVHLCEVVNPQDLPTLQFPFNVRKGRPLLVAVKILRPDANKNARNDFLKEVKILSRLK 77 (304)
T ss_pred eeeEecccCCeEEEEEEeccCcccccccccccccCCcceEEEEEEecCCCCHHHHHHHHHHHHHHhhcC
Confidence 34789999999999998643 3369999985432 223568999999998764
No 42
>cd05070 PTKc_Fyn_Yrk Catalytic domain of the Protein Tyrosine Kinases, Fyn and Yrk. Protein Tyrosine Kinase (PTK) family; Fyn and Yrk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fyn and Yrk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that r
Probab=96.24 E-value=0.0074 Score=59.39 Aligned_cols=48 Identities=35% Similarity=0.570 Sum_probs=40.9
Q ss_pred ceeccCCCccEEEEEeCCCCEEEEEEccccCCcCHHHHHHHHHHhhccc
Q 008872 501 NKLGQGGFGPVYKGKLQDGQEIAVKRLSKASGQGQEEFMNEVMIHKDKV 549 (550)
Q Consensus 501 ~~LG~G~fG~VYKG~L~~g~~VAVKrL~~~s~~~~~eF~~Ev~~i~~l~ 549 (550)
++||+|+||.||++..+++..||+|.+... ....++|.+|+.++.++.
T Consensus 12 ~~ig~g~~~~v~~~~~~~~~~~~~k~~~~~-~~~~~~~~~E~~~l~~l~ 59 (260)
T cd05070 12 KKLGNGQFGEVWMGTWNGNTKVAVKTLKPG-TMSPESFLEEAQIMKKLR 59 (260)
T ss_pred heeccccCceEEEEEecCCceeEEEEecCC-CCCHHHHHHHHHHHHhcC
Confidence 789999999999999988889999999643 335678999999998864
No 43
>cd05049 PTKc_Trk Catalytic domain of the Protein Tyrosine Kinases, Tropomyosin Related Kinases. Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase (Trk) subfamily; catalytic (c) domain. The Trk subfamily consists of TrkA, TrkB, TrkC, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Trk subfamily members are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, the nerve growth factor (NGF) family of neutrotrophins, leads to Trk receptor oligomerization and activation of the catalyt
Probab=96.23 E-value=0.0044 Score=61.62 Aligned_cols=53 Identities=26% Similarity=0.488 Sum_probs=40.9
Q ss_pred ccccceeccCCCccEEEEEeCC------CCEEEEEEccccCCc-CHHHHHHHHHHhhccc
Q 008872 497 FQLANKLGQGGFGPVYKGKLQD------GQEIAVKRLSKASGQ-GQEEFMNEVMIHKDKV 549 (550)
Q Consensus 497 Fs~~~~LG~G~fG~VYKG~L~~------g~~VAVKrL~~~s~~-~~~eF~~Ev~~i~~l~ 549 (550)
|...++||+|+||.||+|...+ +..||||.+...... ..++|.+|++++.++.
T Consensus 7 ~~~~~~lg~g~~~~v~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~ 66 (280)
T cd05049 7 IVLKRELGEGAFGKVFLGECYHLEPENDKELVAVKTLKETASNDARKDFEREAELLTNFQ 66 (280)
T ss_pred hhHHhhccccCCceEeeeeeccccCcCCcceEEEEeecccCCHHHHHHHHHHHHHHHhcC
Confidence 3334789999999999998743 478999999654333 4578999999988763
No 44
>KOG0600 consensus Cdc2-related protein kinase [Cell cycle control, cell division, chromosome partitioning]
Probab=96.22 E-value=0.0043 Score=65.28 Aligned_cols=53 Identities=26% Similarity=0.467 Sum_probs=40.2
Q ss_pred ccccceeccCCCccEEEEE-eCCCCEEEEEEccccC--CcCHHHHHHHHHHhhccc
Q 008872 497 FQLANKLGQGGFGPVYKGK-LQDGQEIAVKRLSKAS--GQGQEEFMNEVMIHKDKV 549 (550)
Q Consensus 497 Fs~~~~LG~G~fG~VYKG~-L~~g~~VAVKrL~~~s--~~~~~eF~~Ev~~i~~l~ 549 (550)
|....+||+|.||.|||+. +..|..||+||+.... .....-...||.||-+|.
T Consensus 119 feki~kIGeGTyg~VYkAr~~~tgkivALKKvr~d~~~~~~~~t~~REI~ILr~l~ 174 (560)
T KOG0600|consen 119 FEKIEKIGEGTYGQVYKARDLETGKIVALKKVRFDNEKEGFPITAIREIKILRRLD 174 (560)
T ss_pred HHHHHHhcCcchhheeEeeecccCcEEEEEEeecccCCCcchHHHHHHHHHHHhcC
Confidence 4444789999999999996 4668999999985432 333455678999998874
No 45
>cd05107 PTKc_PDGFR_beta Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor beta. Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) beta; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR beta is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR beta forms homodimers or heterodimers with PDGFR alpha, depending on the nature of the PDGF ligand. PDGF-BB and PDGF-D
Probab=96.21 E-value=0.0057 Score=64.94 Aligned_cols=53 Identities=26% Similarity=0.417 Sum_probs=40.0
Q ss_pred ccccceeccCCCccEEEEEeCC------CCEEEEEEccccCC-cCHHHHHHHHHHhhccc
Q 008872 497 FQLANKLGQGGFGPVYKGKLQD------GQEIAVKRLSKASG-QGQEEFMNEVMIHKDKV 549 (550)
Q Consensus 497 Fs~~~~LG~G~fG~VYKG~L~~------g~~VAVKrL~~~s~-~~~~eF~~Ev~~i~~l~ 549 (550)
+...++||+|+||.||+|...+ +..||||++..... ...+.|+.|+++|.++.
T Consensus 39 ~~~~~~lG~G~fG~Vy~~~~~~~~~~~~~~~vavK~l~~~~~~~~~~~~~~E~~~l~~l~ 98 (401)
T cd05107 39 LVLGRTLGSGAFGRVVEATAHGLSHSQSTMKVAVKMLKSTARSSEKQALMSELKIMSHLG 98 (401)
T ss_pred eehhhhccCCCceeEEEEEEcCCCCCCCceEEEEEecCCCCChhHHHHHHHHHHHHHhcC
Confidence 3344899999999999998642 45899999964322 22457999999998864
No 46
>cd05071 PTKc_Src Catalytic domain of the Protein Tyrosine Kinase, Src. Protein Tyrosine Kinase (PTK) family; Src kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) is a cytoplasmic (or non-receptor) tyr kinase, containing an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region with a conserved tyr. It is activated by autophosphorylation at the tyr kinase domain, and is negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). c-Src is the vertebrate homolog of the oncogenic protein (v-Src) from Rous sarcoma virus. Together with other Src subfamily proteins, it is invo
Probab=96.19 E-value=0.008 Score=59.38 Aligned_cols=52 Identities=33% Similarity=0.537 Sum_probs=41.5
Q ss_pred ccccceeccCCCccEEEEEeCCCCEEEEEEccccCCcCHHHHHHHHHHhhccc
Q 008872 497 FQLANKLGQGGFGPVYKGKLQDGQEIAVKRLSKASGQGQEEFMNEVMIHKDKV 549 (550)
Q Consensus 497 Fs~~~~LG~G~fG~VYKG~L~~g~~VAVKrL~~~s~~~~~eF~~Ev~~i~~l~ 549 (550)
|.-..+||+|+||.||+|...+...||||++... ....++|..|+.++.++.
T Consensus 8 ~~~~~~lg~g~~~~v~~~~~~~~~~valK~~~~~-~~~~~~~~~E~~~l~~l~ 59 (262)
T cd05071 8 LRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPG-TMSPEAFLQEAQVMKKLR 59 (262)
T ss_pred eeEeeecCCCCCCcEEEEEecCCceEEEEecccC-ccCHHHHHHHHHHHHhCC
Confidence 3334789999999999999877778999999642 345678999999887753
No 47
>cd05063 PTKc_EphR_A2 Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A2. Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA2 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored
Probab=96.18 E-value=0.0063 Score=60.11 Aligned_cols=55 Identities=25% Similarity=0.517 Sum_probs=42.0
Q ss_pred ccccccceeccCCCccEEEEEeCC-C---CEEEEEEcccc-CCcCHHHHHHHHHHhhccc
Q 008872 495 NNFQLANKLGQGGFGPVYKGKLQD-G---QEIAVKRLSKA-SGQGQEEFMNEVMIHKDKV 549 (550)
Q Consensus 495 ~~Fs~~~~LG~G~fG~VYKG~L~~-g---~~VAVKrL~~~-s~~~~~eF~~Ev~~i~~l~ 549 (550)
++|...++||+|+||.||+|++.. + ..+|||++... .....++|.+|++++.++.
T Consensus 5 ~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~l~ 64 (268)
T cd05063 5 SHITKQKVIGAGEFGEVFRGILKMPGRKEVAVAIKTLKPGYTEKQRQDFLSEASIMGQFS 64 (268)
T ss_pred HHceEeeEecCCCCccEEEEEEecCCCCceEEEEEeccccCCHHHHHHHHHHHHHHhcCC
Confidence 456677999999999999999853 3 37999998643 2233567999999988763
No 48
>cd05104 PTKc_Kit Catalytic domain of the Protein Tyrosine Kinase, Kit. Protein Tyrosine Kinase (PTK) family; Kit (or c-Kit); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Kit is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of Kit to its ligand, the stem-cell factor (SCF), leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. Kit is important in the development of melanocytes, germ cells, mast cells, hematopoietic stem ce
Probab=96.15 E-value=0.0058 Score=64.18 Aligned_cols=52 Identities=25% Similarity=0.402 Sum_probs=39.0
Q ss_pred ccccceeccCCCccEEEEEe------CCCCEEEEEEccccC-CcCHHHHHHHHHHhhcc
Q 008872 497 FQLANKLGQGGFGPVYKGKL------QDGQEIAVKRLSKAS-GQGQEEFMNEVMIHKDK 548 (550)
Q Consensus 497 Fs~~~~LG~G~fG~VYKG~L------~~g~~VAVKrL~~~s-~~~~~eF~~Ev~~i~~l 548 (550)
|...++||+|+||.||+++. ..+..||||+++... ....+.|.+|+.++.++
T Consensus 37 ~~~~~~LG~G~fG~V~~~~~~~~~~~~~~~~vavK~l~~~~~~~~~~~~~~Ei~il~~l 95 (375)
T cd05104 37 LSFGKTLGAGAFGKVVEATAYGLFKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYL 95 (375)
T ss_pred eehhheecCCccceEEEEEEeccccCccceeEEEEeccCCcCcHHHHHHHHHHHHHHHh
Confidence 44458999999999999974 235689999996432 23346799999998765
No 49
>cd05043 PTK_Ryk Pseudokinase domain of Ryk (Receptor related to tyrosine kinase). Protein Tyrosine Kinase (PTK) family; Receptor related to tyrosine kinase (Ryk); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ryk is a receptor tyr kinase (RTK) containing an extracellular region with two leucine-rich motifs, a transmembrane segment, and an intracellular inactive pseudokinase domain. The extracellular region of Ryk shows homology to the N-terminal domain of Wnt inhibitory factor-1 (WIF) and serves as the ligand (Wnt) binding domain of Ryk. Ryk is expressed in many different tissues both during development and in adults, suggesting a widespread function. It
Probab=96.14 E-value=0.0047 Score=61.54 Aligned_cols=55 Identities=24% Similarity=0.356 Sum_probs=42.4
Q ss_pred ccccccceeccCCCccEEEEEeCC-----CCEEEEEEcccc-CCcCHHHHHHHHHHhhccc
Q 008872 495 NNFQLANKLGQGGFGPVYKGKLQD-----GQEIAVKRLSKA-SGQGQEEFMNEVMIHKDKV 549 (550)
Q Consensus 495 ~~Fs~~~~LG~G~fG~VYKG~L~~-----g~~VAVKrL~~~-s~~~~~eF~~Ev~~i~~l~ 549 (550)
++|...++||+|+||.||+|...+ +..||+|++... .....+.|.+|+.++.++.
T Consensus 6 ~~~~~~~~i~~g~~g~V~~~~~~~~~~~~~~~v~~k~~~~~~~~~~~~~~~~e~~~l~~l~ 66 (280)
T cd05043 6 DRVTLSDLLQEGTFGRIFYGILIDEKPGKEEEVFVKTVKDHASEIQVTLLLQESCLLYGLS 66 (280)
T ss_pred hheEEeeeecccCCceEEEEEEecCCCCceeEEEEEEccCCCCHHHHHHHHHHHHHHHhCC
Confidence 345556899999999999999865 688999998543 2233567999999988763
No 50
>cd05103 PTKc_VEGFR2 Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 2. Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 2 (VEGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR2 (or Flk1) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. The carboxyl terminus of VEGFR2 plays an important role in its autophosp
Probab=96.14 E-value=0.0053 Score=63.56 Aligned_cols=52 Identities=27% Similarity=0.450 Sum_probs=39.3
Q ss_pred ccccceeccCCCccEEEEE------eCCCCEEEEEEccccC-CcCHHHHHHHHHHhhcc
Q 008872 497 FQLANKLGQGGFGPVYKGK------LQDGQEIAVKRLSKAS-GQGQEEFMNEVMIHKDK 548 (550)
Q Consensus 497 Fs~~~~LG~G~fG~VYKG~------L~~g~~VAVKrL~~~s-~~~~~eF~~Ev~~i~~l 548 (550)
|.-.++||+|+||.||+|. ...++.||||+++... ....+.+..|+.++.++
T Consensus 9 ~~~~~~lG~G~fg~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l 67 (343)
T cd05103 9 LKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHI 67 (343)
T ss_pred hcccccccCCccceEEEEeeccCCccccceeEEEEEeccCCChHHHHHHHHHHHHHHhc
Confidence 4444899999999999996 2457899999996432 22345788999998876
No 51
>cd05073 PTKc_Hck Catalytic domain of the Protein Tyrosine Kinase, Hematopoietic cell kinase. Protein Tyrosine Kinase (PTK) family; Hematopoietic cell kinase (Hck); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Hck is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pa
Probab=96.10 E-value=0.0073 Score=59.45 Aligned_cols=52 Identities=29% Similarity=0.496 Sum_probs=41.8
Q ss_pred ccccceeccCCCccEEEEEeCCCCEEEEEEccccCCcCHHHHHHHHHHhhccc
Q 008872 497 FQLANKLGQGGFGPVYKGKLQDGQEIAVKRLSKASGQGQEEFMNEVMIHKDKV 549 (550)
Q Consensus 497 Fs~~~~LG~G~fG~VYKG~L~~g~~VAVKrL~~~s~~~~~eF~~Ev~~i~~l~ 549 (550)
+...++||+|+||.||++...++..+|||.+... ....+.|.+|+.++.++.
T Consensus 8 ~~~~~~lg~g~~~~vy~~~~~~~~~~~iK~~~~~-~~~~~~~~~e~~~l~~l~ 59 (260)
T cd05073 8 LKLEKKLGAGQFGEVWMATYNKHTKVAVKTMKPG-SMSVEAFLAEANVMKTLQ 59 (260)
T ss_pred eeEEeEecCccceEEEEEEecCCccEEEEecCCC-hhHHHHHHHHHHHHHhcC
Confidence 4445899999999999999888888999988543 334567999999988763
No 52
>cd07877 STKc_p38alpha_MAPK14 Catalytic domain of the Serine/Threonine Kinase, p38alpha Mitogen-Activated Protein Kinase. Serine/Threonine Kinases (STKs), p38alpha subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38alpha subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38alpha, also called MAPK14
Probab=96.08 E-value=0.0081 Score=62.22 Aligned_cols=64 Identities=22% Similarity=0.281 Sum_probs=50.1
Q ss_pred cHHHHHHhhccccccceeccCCCccEEEEEe-CCCCEEEEEEcccc--CCcCHHHHHHHHHHhhccc
Q 008872 486 NFEELANATNNFQLANKLGQGGFGPVYKGKL-QDGQEIAVKRLSKA--SGQGQEEFMNEVMIHKDKV 549 (550)
Q Consensus 486 s~~eL~~AT~~Fs~~~~LG~G~fG~VYKG~L-~~g~~VAVKrL~~~--s~~~~~eF~~Ev~~i~~l~ 549 (550)
...++..+++.|.....||+|+||.||++.. .+++.||||++... +....+.+.+|+.++.++.
T Consensus 8 ~~~~~~~~~~~y~~~~~lg~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~Ei~~l~~l~ 74 (345)
T cd07877 8 LNKTIWEVPERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMK 74 (345)
T ss_pred HHHHHhhccCceEEEEEeeecCCeEEEEEEEcCCCeEEEEEEecCcchhhHHHHHHHHHHHHHHHcC
Confidence 3456777888898888999999999999975 56889999999643 2223567889999888763
No 53
>PLN00034 mitogen-activated protein kinase kinase; Provisional
Probab=96.06 E-value=0.0065 Score=63.12 Aligned_cols=49 Identities=27% Similarity=0.367 Sum_probs=39.1
Q ss_pred ceeccCCCccEEEEEeC-CCCEEEEEEccccC-CcCHHHHHHHHHHhhccc
Q 008872 501 NKLGQGGFGPVYKGKLQ-DGQEIAVKRLSKAS-GQGQEEFMNEVMIHKDKV 549 (550)
Q Consensus 501 ~~LG~G~fG~VYKG~L~-~g~~VAVKrL~~~s-~~~~~eF~~Ev~~i~~l~ 549 (550)
++||+|+||.||+++.. +|+.||||.+.... ....++|.+|++++.++.
T Consensus 80 ~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~ 130 (353)
T PLN00034 80 NRIGSGAGGTVYKVIHRPTGRLYALKVIYGNHEDTVRRQICREIEILRDVN 130 (353)
T ss_pred hhccCCCCeEEEEEEECCCCCEEEEEEEecCCcHHHHHHHHHHHHHHHhCC
Confidence 78999999999999874 68999999985332 223467999999998764
No 54
>cd05105 PTKc_PDGFR_alpha Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor alpha. Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) alpha; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR alpha is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR alpha forms homodimers or heterodimers with PDGFR beta, depending on the nature of the PDGF ligand. PDGF-AA, PDGF-
Probab=96.04 E-value=0.008 Score=63.82 Aligned_cols=53 Identities=28% Similarity=0.416 Sum_probs=39.4
Q ss_pred ccccceeccCCCccEEEEEeCC------CCEEEEEEccccC-CcCHHHHHHHHHHhhccc
Q 008872 497 FQLANKLGQGGFGPVYKGKLQD------GQEIAVKRLSKAS-GQGQEEFMNEVMIHKDKV 549 (550)
Q Consensus 497 Fs~~~~LG~G~fG~VYKG~L~~------g~~VAVKrL~~~s-~~~~~eF~~Ev~~i~~l~ 549 (550)
|...++||+|+||.||+|+... +..||||++.... ....+.|++|+.++.++.
T Consensus 39 ~~~~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vavK~l~~~~~~~~~~~~~~Ei~~l~~l~ 98 (400)
T cd05105 39 LVLGRILGSGAFGKVVEGTAYGLSRSQPVMKVAVKMLKPTARSSEKQALMSELKIMTHLG 98 (400)
T ss_pred eehhheecCCCCceEEEEEEcccCCCCCceEEEEEecCCCCChHHHHHHHHHHHHHHhcC
Confidence 4444899999999999998521 3469999996432 223467999999998873
No 55
>cd06639 STKc_myosinIIIB Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIB myosin. Serine/threonine kinases (STKs), class IIIB myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. They may also function as cargo carriers during light-dependent translocation, in photoreceptor cells, of proteins such as transducin and arrestin. Class IIIB myosin is expressed highly in retina. It is also pre
Probab=96.04 E-value=0.0061 Score=61.12 Aligned_cols=63 Identities=30% Similarity=0.480 Sum_probs=50.9
Q ss_pred ccHHHHHHhhccccccceeccCCCccEEEEEe-CCCCEEEEEEccccCCcCHHHHHHHHHHhhcc
Q 008872 485 FNFEELANATNNFQLANKLGQGGFGPVYKGKL-QDGQEIAVKRLSKASGQGQEEFMNEVMIHKDK 548 (550)
Q Consensus 485 fs~~eL~~AT~~Fs~~~~LG~G~fG~VYKG~L-~~g~~VAVKrL~~~s~~~~~eF~~Ev~~i~~l 548 (550)
++++++..++++|...++||+|+||.||++.. .+++.+|+|.+... ....+++.+|+.++.++
T Consensus 12 ~~~~~~~~~~~~y~~~~~l~~g~~~~vy~~~~~~~~~~~aik~~~~~-~~~~~~~~~e~~~l~~l 75 (291)
T cd06639 12 LGLESLGDPTDTWEIIETIGKGTYGKVYKVTNKKDGSLAAVKILDPI-SDVDEEIEAEYNILQSL 75 (291)
T ss_pred hhcccCCCCCCCeEEEEEeecCCCeEEEEEEECCCCCEEEEEEeccc-ccHHHHHHHHHHHHHHh
Confidence 56678888899999889999999999999987 45889999998543 22356788888888765
No 56
>cd05050 PTKc_Musk Catalytic domain of the Protein Tyrosine Kinase, Muscle-specific kinase. Protein Tyrosine Kinase (PTK) family; Muscle-specific kinase (Musk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Musk is a receptor tyr kinase (RTK) containing an extracellular region with four immunoglobulin-like domains and a cysteine-rich cluster, a transmembrane segment, and an intracellular catalytic domain. Musk is expressed and concentrated in the postsynaptic membrane in skeletal muscle. It is essential for the establishment of the neuromuscular junction (NMJ), a peripheral synapse that conveys signals from motor neurons to muscle cells. Agrin, a large proteoglycan released from motor neurons, stimulates M
Probab=96.03 E-value=0.0066 Score=60.79 Aligned_cols=55 Identities=29% Similarity=0.456 Sum_probs=42.6
Q ss_pred ccccccceeccCCCccEEEEEeC------CCCEEEEEEcccc-CCcCHHHHHHHHHHhhccc
Q 008872 495 NNFQLANKLGQGGFGPVYKGKLQ------DGQEIAVKRLSKA-SGQGQEEFMNEVMIHKDKV 549 (550)
Q Consensus 495 ~~Fs~~~~LG~G~fG~VYKG~L~------~g~~VAVKrL~~~-s~~~~~eF~~Ev~~i~~l~ 549 (550)
++|.....||+|+||.||++..+ ++..||||.+... ..+..++|.+|+.+++++.
T Consensus 5 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~ei~~l~~l~ 66 (288)
T cd05050 5 NNIEYVRDIGQGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAALMAEFD 66 (288)
T ss_pred HhceecccccccccccEEEEEEcccCCCCcceeEEEEecCCCcCHHHHHHHHHHHHHHHhcC
Confidence 45666689999999999999864 3578999998643 2234578999999998864
No 57
>cd06638 STKc_myosinIIIA Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIA myosin. Serine/threonine kinases (STKs), class IIIA myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. In photoreceptor cells, they may also function as cargo carriers during light-dependent translocation of proteins such as transducin and arrestin. Class IIIA myosin is highly expressed in retina and in inner ear
Probab=96.02 E-value=0.0064 Score=60.71 Aligned_cols=63 Identities=25% Similarity=0.434 Sum_probs=49.4
Q ss_pred ccHHHHHHhhccccccceeccCCCccEEEEEeC-CCCEEEEEEccccCCcCHHHHHHHHHHhhcc
Q 008872 485 FNFEELANATNNFQLANKLGQGGFGPVYKGKLQ-DGQEIAVKRLSKASGQGQEEFMNEVMIHKDK 548 (550)
Q Consensus 485 fs~~eL~~AT~~Fs~~~~LG~G~fG~VYKG~L~-~g~~VAVKrL~~~s~~~~~eF~~Ev~~i~~l 548 (550)
+.++.+..++++|.....||+|+||.||++... .++.+|+|.++.. ....+++.+|+.++.++
T Consensus 8 ~~~~~~~~~~~~~~~~~~lg~g~~~~vy~~~~~~~~~~~~ik~~~~~-~~~~~~~~~e~~~l~~l 71 (286)
T cd06638 8 IIFDSFPDPSDTWEIIETIGKGTYGKVFKVLNKKNGSKAAVKILDPI-HDIDEEIEAEYNILKAL 71 (286)
T ss_pred EEeecCCCcccceeeeeeeccCCCcEEEEEEECCCCceeEEEeeccc-cchHHHHHHHHHHHHHH
Confidence 445667778888888899999999999999874 5789999998643 22356788999888765
No 58
>KOG0199 consensus ACK and related non-receptor tyrosine kinases [Signal transduction mechanisms]
Probab=96.02 E-value=0.0087 Score=65.35 Aligned_cols=59 Identities=27% Similarity=0.372 Sum_probs=45.3
Q ss_pred cccHHHHHHhhccccccceeccCCCccEEEEEe--CCCC--EEEEEEccccCCc-CHHHHHHHHHHhhccc
Q 008872 484 VFNFEELANATNNFQLANKLGQGGFGPVYKGKL--QDGQ--EIAVKRLSKASGQ-GQEEFMNEVMIHKDKV 549 (550)
Q Consensus 484 ~fs~~eL~~AT~~Fs~~~~LG~G~fG~VYKG~L--~~g~--~VAVKrL~~~s~~-~~~eF~~Ev~~i~~l~ 549 (550)
.+..++|... ++||+|.||.|.+|.+ ++|. .||||.|...... ...+|+.|+.+|-+|.
T Consensus 106 lIpee~i~l~-------e~LG~GsFgvV~rg~Wt~psgk~V~VAVKclr~d~l~~~mddflrEas~M~~L~ 169 (1039)
T KOG0199|consen 106 LIPEEQIKLY-------ELLGEGSFGVVKRGTWTQPSGKHVNVAVKCLRDDSLNAIMDDFLREASHMLKLQ 169 (1039)
T ss_pred eccHHHHHHH-------HHhcCcceeeEeeccccCCCCcEEeEEEEeccCCccchhHHHHHHHHHHHHhcc
Confidence 3555666544 7999999999999988 4565 5899999654333 5688999999998864
No 59
>cd05090 PTKc_Ror1 Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 1. Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 1 (Ror1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase cataly
Probab=96.01 E-value=0.0076 Score=60.15 Aligned_cols=50 Identities=32% Similarity=0.517 Sum_probs=39.1
Q ss_pred cceeccCCCccEEEEEe-----CCCCEEEEEEcccc-CCcCHHHHHHHHHHhhccc
Q 008872 500 ANKLGQGGFGPVYKGKL-----QDGQEIAVKRLSKA-SGQGQEEFMNEVMIHKDKV 549 (550)
Q Consensus 500 ~~~LG~G~fG~VYKG~L-----~~g~~VAVKrL~~~-s~~~~~eF~~Ev~~i~~l~ 549 (550)
.++||+|+||.||+|.. ..+..||||++... ..+..++|.+|+.++.++.
T Consensus 10 ~~~lg~g~~g~vy~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~E~~~l~~l~ 65 (283)
T cd05090 10 MEELGECAFGKIYKGHLYLPGMDHAQLVAIKTLKDINNPQQWGEFQQEASLMAELH 65 (283)
T ss_pred eeeccccCCcceEEEEEecCCCCCcceEEEEeccCCCCHHHHHHHHHHHHHHhhCC
Confidence 37899999999999985 34578999999643 2334468999999998863
No 60
>cd06646 STKc_MAP4K5 Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 5. Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 5 (MAPKKKK5 or MAP4K5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated
Probab=95.99 E-value=0.011 Score=58.35 Aligned_cols=49 Identities=27% Similarity=0.484 Sum_probs=39.6
Q ss_pred cceeccCCCccEEEEEe-CCCCEEEEEEccccCCcCHHHHHHHHHHhhcc
Q 008872 500 ANKLGQGGFGPVYKGKL-QDGQEIAVKRLSKASGQGQEEFMNEVMIHKDK 548 (550)
Q Consensus 500 ~~~LG~G~fG~VYKG~L-~~g~~VAVKrL~~~s~~~~~eF~~Ev~~i~~l 548 (550)
..+||+|+||.||+|+. .+++.||||++........+.+.+|+.++.++
T Consensus 14 ~~~lg~g~~g~vy~~~~~~~~~~~aik~~~~~~~~~~~~~~~e~~~l~~~ 63 (267)
T cd06646 14 IQRVGSGTYGDVYKARNLHTGELAAVKIIKLEPGDDFSLIQQEIFMVKEC 63 (267)
T ss_pred hheeecCCCeEEEEEEECCCCeEEEEEEEecCccchHHHHHHHHHHHHhc
Confidence 37899999999999986 56889999998644444456788999988765
No 61
>KOG0197 consensus Tyrosine kinases [Signal transduction mechanisms]
Probab=95.98 E-value=0.0087 Score=63.31 Aligned_cols=58 Identities=33% Similarity=0.488 Sum_probs=47.4
Q ss_pred cccHHHHHHhhccccccceeccCCCccEEEEEeCCCCEEEEEEccccCCcCHHHHHHHHHHhhccc
Q 008872 484 VFNFEELANATNNFQLANKLGQGGFGPVYKGKLQDGQEIAVKRLSKASGQGQEEFMNEVMIHKDKV 549 (550)
Q Consensus 484 ~fs~~eL~~AT~~Fs~~~~LG~G~fG~VYKG~L~~g~~VAVKrL~~~s~~~~~eF~~Ev~~i~~l~ 549 (550)
.+..++|... +.||+|-||.|+.|.+.+...||||.+... ....++|.+|+.+|-+|.
T Consensus 202 ei~r~~l~l~-------~~LG~G~FG~V~~g~~~~~~~vavk~ik~~-~m~~~~f~~Ea~iMk~L~ 259 (468)
T KOG0197|consen 202 EIPREELKLI-------RELGSGQFGEVWLGKWNGSTKVAVKTIKEG-SMSPEAFLREAQIMKKLR 259 (468)
T ss_pred eecHHHHHHH-------HHhcCCccceEEEEEEcCCCcccceEEecc-ccChhHHHHHHHHHHhCc
Confidence 3555665543 789999999999999977779999999654 456788999999998874
No 62
>PTZ00283 serine/threonine protein kinase; Provisional
Probab=95.91 E-value=0.0071 Score=66.11 Aligned_cols=57 Identities=25% Similarity=0.322 Sum_probs=43.2
Q ss_pred HhhccccccceeccCCCccEEEEEe-CCCCEEEEEEcccc--CCcCHHHHHHHHHHhhcc
Q 008872 492 NATNNFQLANKLGQGGFGPVYKGKL-QDGQEIAVKRLSKA--SGQGQEEFMNEVMIHKDK 548 (550)
Q Consensus 492 ~AT~~Fs~~~~LG~G~fG~VYKG~L-~~g~~VAVKrL~~~--s~~~~~eF~~Ev~~i~~l 548 (550)
...+.|...++||+|+||+||++.. .+|+.||||++... +.+....+.+|+.++.++
T Consensus 29 ~~~~rY~i~~~LG~G~fG~Vy~a~~~~~g~~vAvK~i~~~~~~~~~~~~~~~Ei~~l~~~ 88 (496)
T PTZ00283 29 EQAKKYWISRVLGSGATGTVLCAKRVSDGEPFAVKVVDMEGMSEADKNRAQAEVCCLLNC 88 (496)
T ss_pred ccCCCEEEEEEEecCCCEEEEEEEEcCCCCEEEEEEEecccCCHHHHHHHHHHHHHHhcC
Confidence 3345566668999999999999975 56899999998533 233456788999888664
No 63
>KOG0658 consensus Glycogen synthase kinase-3 [Carbohydrate transport and metabolism]
Probab=95.90 E-value=0.0088 Score=60.63 Aligned_cols=48 Identities=27% Similarity=0.552 Sum_probs=33.4
Q ss_pred ccccceeccCCCccEEEEEeCC-CCEEEEEEccccCCcCHHHHHHHHHHhhcc
Q 008872 497 FQLANKLGQGGFGPVYKGKLQD-GQEIAVKRLSKASGQGQEEFMNEVMIHKDK 548 (550)
Q Consensus 497 Fs~~~~LG~G~fG~VYKG~L~~-g~~VAVKrL~~~s~~~~~eF~~Ev~~i~~l 548 (550)
+.+.+++|.|+||.||+|++.. ++.|||||.....+.. -.|+.+|.++
T Consensus 26 ~~~~~liG~GsFg~Vyq~~~~e~~~~vAIKKv~~d~r~k----nrEl~im~~l 74 (364)
T KOG0658|consen 26 YEAVRLIGSGSFGVVYQAKLRETEEEVAIKKVLQDKRYK----NRELQIMRKL 74 (364)
T ss_pred EEeeEEEeecccceEEEEEEcCCCceeEEEEecCCCCcC----cHHHHHHHhc
Confidence 3445899999999999999954 6899999984332222 1355555543
No 64
>cd07864 STKc_CDK12 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 12. Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 12 (CDK12) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK12 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK12 is also called Cdc2-related protein kinase 7 (CRK7) or Cdc2-related kinase arginine/serine-rich (CrkRS). It is a unique CDK that contains an arginine/serine-rich (RS) domain, which is predominantly found in splicing factors. CDK12 is widely
Probab=95.87 E-value=0.014 Score=58.63 Aligned_cols=57 Identities=21% Similarity=0.437 Sum_probs=43.9
Q ss_pred hhccccccceeccCCCccEEEEEeC-CCCEEEEEEccccC--CcCHHHHHHHHHHhhccc
Q 008872 493 ATNNFQLANKLGQGGFGPVYKGKLQ-DGQEIAVKRLSKAS--GQGQEEFMNEVMIHKDKV 549 (550)
Q Consensus 493 AT~~Fs~~~~LG~G~fG~VYKG~L~-~g~~VAVKrL~~~s--~~~~~eF~~Ev~~i~~l~ 549 (550)
+.++|...++||+|+||.||+|+.. +|+.||||+++... ......+.+|+.++.++.
T Consensus 5 ~~~~~~~~~~lg~g~~g~v~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~~e~~~~~~l~ 64 (302)
T cd07864 5 CVDKFDIIGQIGEGTYGQVYKARDKDTGELVALKKVRLDNEKEGFPITAIREIKILRQLN 64 (302)
T ss_pred hhhhhheeeeecccCCEEEEEEEECCCCcEEEEEEEeecccccCchHHHHHHHHHHHhCC
Confidence 4456666789999999999999985 58899999995432 233467888999888763
No 65
>cd05106 PTKc_CSF-1R Catalytic domain of the Protein Tyrosine Kinase, Colony-Stimulating Factor-1 Receptor. Protein Tyrosine Kinase (PTK) family; Colony-Stimulating Factor-1 Receptor (CSF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CSF-1R, also called c-Fms, is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of CSF-1R to its ligand, CSF-1, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. CSF-1R signaling is criti
Probab=95.86 E-value=0.0088 Score=62.81 Aligned_cols=53 Identities=30% Similarity=0.479 Sum_probs=39.1
Q ss_pred cccccceeccCCCccEEEEEe------CCCCEEEEEEccccC-CcCHHHHHHHHHHhhcc
Q 008872 496 NFQLANKLGQGGFGPVYKGKL------QDGQEIAVKRLSKAS-GQGQEEFMNEVMIHKDK 548 (550)
Q Consensus 496 ~Fs~~~~LG~G~fG~VYKG~L------~~g~~VAVKrL~~~s-~~~~~eF~~Ev~~i~~l 548 (550)
+|...++||+|+||.||+++. .++..||||++.... ....+.|.+|+.++.++
T Consensus 39 ~~~~~~~LG~G~fg~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~il~~l 98 (374)
T cd05106 39 NLQFGKTLGAGAFGKVVEATAFGLGKEDNVLRVAVKMLKASAHTDEREALMSELKILSHL 98 (374)
T ss_pred HceehheecCCCcccEEEEEEecCCcccccceeEEEeccCCCCHHHHHHHHHHHHHHHhh
Confidence 355558999999999999873 234589999996432 22245689999999876
No 66
>cd07871 STKc_PCTAIRE3 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-3 kinase. Serine/Threonine Kinases (STKs), PCTAIRE-3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-3 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-3 shows a restricted pattern of expression and is present in brain, kidney, and intestine. It is elevated in Alzheimer's disease (AD) and has been shown to associate with paired helical filament
Probab=95.86 E-value=0.014 Score=58.66 Aligned_cols=53 Identities=23% Similarity=0.391 Sum_probs=40.9
Q ss_pred ccccceeccCCCccEEEEEeC-CCCEEEEEEccccC-CcCHHHHHHHHHHhhccc
Q 008872 497 FQLANKLGQGGFGPVYKGKLQ-DGQEIAVKRLSKAS-GQGQEEFMNEVMIHKDKV 549 (550)
Q Consensus 497 Fs~~~~LG~G~fG~VYKG~L~-~g~~VAVKrL~~~s-~~~~~eF~~Ev~~i~~l~ 549 (550)
|...++||+|+||.||+|... +++.||||++.... ......+.+|+.++.++.
T Consensus 7 y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~ 61 (288)
T cd07871 7 YVKLDKLGEGTYATVFKGRSKLTENLVALKEIRLEHEEGAPCTAIREVSLLKNLK 61 (288)
T ss_pred ceEeeEEecCCCEEEEEEEECCCCCEEEEEEecccccCCcchhHHHHHHHHHhCC
Confidence 444579999999999999874 57899999985432 334567889999998764
No 67
>cd05036 PTKc_ALK_LTK Catalytic domain of the Protein Tyrosine Kinases, Anaplastic Lymphoma Kinase and Leukocyte Tyrosine Kinase. Protein Tyrosine Kinase (PTK) family; Anaplastic Lymphoma Kinase (ALK) and Leukocyte Tyrosine (tyr) Kinase (LTK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyr residues in protein substrates. ALK and LTK are orphan receptor tyr kinases (RTKs) whose ligands are not yet well-defined. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. They are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. ALK appears to play an important role in mammalian neural development as well
Probab=95.81 E-value=0.01 Score=59.06 Aligned_cols=57 Identities=32% Similarity=0.562 Sum_probs=43.4
Q ss_pred hhccccccceeccCCCccEEEEEeCC------CCEEEEEEcccc-CCcCHHHHHHHHHHhhccc
Q 008872 493 ATNNFQLANKLGQGGFGPVYKGKLQD------GQEIAVKRLSKA-SGQGQEEFMNEVMIHKDKV 549 (550)
Q Consensus 493 AT~~Fs~~~~LG~G~fG~VYKG~L~~------g~~VAVKrL~~~-s~~~~~eF~~Ev~~i~~l~ 549 (550)
++++|...++||+|++|.||+|...+ +..||+|.+... ......+|..|+.++.++.
T Consensus 4 ~~~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~e~~~l~~l~ 67 (277)
T cd05036 4 PRDSITLLRALGHGAFGEVYEGLYRGRDGDAVELQVAVKTLPESCSEQDESDFLMEALIMSKFN 67 (277)
T ss_pred CHHHcEeeeECCCCCCCcEEEEEEecCCCCCCceeEEEEEcCCCCCHHHHHHHHHHHHHHHhCC
Confidence 34567767899999999999999854 467899988533 2333567999999998764
No 68
>cd07872 STKc_PCTAIRE2 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-2 kinase. Serine/Threonine Kinases (STKs), PCTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-2 is specifically expressed in neurons in the central nervous system, mainly in terminally differentiated neurons. It associates with Trap (Tudor repeat associator with PCTAIRE-2) and could play
Probab=95.80 E-value=0.014 Score=59.27 Aligned_cols=53 Identities=25% Similarity=0.396 Sum_probs=40.6
Q ss_pred ccccceeccCCCccEEEEEeC-CCCEEEEEEccccC-CcCHHHHHHHHHHhhccc
Q 008872 497 FQLANKLGQGGFGPVYKGKLQ-DGQEIAVKRLSKAS-GQGQEEFMNEVMIHKDKV 549 (550)
Q Consensus 497 Fs~~~~LG~G~fG~VYKG~L~-~g~~VAVKrL~~~s-~~~~~eF~~Ev~~i~~l~ 549 (550)
|...++||+|+||.||+|... .++.||||+++... ......+.+|+.++.++.
T Consensus 8 y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~ 62 (309)
T cd07872 8 YIKLEKLGEGTYATVFKGRSKLTENLVALKEIRLEHEEGAPCTAIREVSLLKDLK 62 (309)
T ss_pred eEEEEEecccCCEEEEEEEecCCCCeEEEEEeeccccCCcchhHHHHHHHHHhCC
Confidence 444578999999999999874 57889999985432 233457889999998763
No 69
>cd07870 STKc_PFTAIRE2 Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-2 kinase. Serine/Threonine Kinases (STKs), PFTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-2 is also referred to as ALS2CR7 (amyotrophic lateral sclerosis 2 (juvenile) chromosome region candidate 7). It may be associated with amyotrophic lateral sclerosis 2 (ALS2), an autosomal recess
Probab=95.78 E-value=0.014 Score=58.42 Aligned_cols=57 Identities=28% Similarity=0.392 Sum_probs=43.6
Q ss_pred hhccccccceeccCCCccEEEEEeC-CCCEEEEEEccccC-CcCHHHHHHHHHHhhccc
Q 008872 493 ATNNFQLANKLGQGGFGPVYKGKLQ-DGQEIAVKRLSKAS-GQGQEEFMNEVMIHKDKV 549 (550)
Q Consensus 493 AT~~Fs~~~~LG~G~fG~VYKG~L~-~g~~VAVKrL~~~s-~~~~~eF~~Ev~~i~~l~ 549 (550)
|+++|...++||+|+||.||+|... +|..||||++.... ......+.+|+.++.++.
T Consensus 3 ~~~~y~~~~~ig~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~l~~l~ 61 (291)
T cd07870 3 AATSYLNLEKLGEGSYATVYKGISRINGQLVALKVISMKTEEGVPFTAIREASLLKGLK 61 (291)
T ss_pred ccceeEEEEEEEecCCEEEEEEEEcCCCcEEEEEEecccCcCCCcHHHHHHHHHHHhcC
Confidence 4556777789999999999999874 58899999985432 233457889998887763
No 70
>cd07869 STKc_PFTAIRE1 Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-1 kinase. Serine/Threonine Kinases (STKs), PFTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-1 is widely expressed except in the spleen and thymus. It is highly expressed in the brain, heart, pancreas, testis, and ovary, and is localized in the cytoplasm. It is regulated by cyclin D3 an
Probab=95.78 E-value=0.015 Score=58.79 Aligned_cols=55 Identities=25% Similarity=0.437 Sum_probs=41.9
Q ss_pred ccccccceeccCCCccEEEEEeC-CCCEEEEEEccccC-CcCHHHHHHHHHHhhccc
Q 008872 495 NNFQLANKLGQGGFGPVYKGKLQ-DGQEIAVKRLSKAS-GQGQEEFMNEVMIHKDKV 549 (550)
Q Consensus 495 ~~Fs~~~~LG~G~fG~VYKG~L~-~g~~VAVKrL~~~s-~~~~~eF~~Ev~~i~~l~ 549 (550)
++|...++||+|+||.||+|.-. +++.||||.+.... ......+.+|+.++.++.
T Consensus 5 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~ 61 (303)
T cd07869 5 DSYEKLEKLGEGSYATVYKGKSKVNGKLVALKVIRLQEEEGTPFTAIREASLLKGLK 61 (303)
T ss_pred ccceEeeeEEecCCEEEEEEEECCCCCEEEEEEeccccccccchhHHHHHHHHhhCC
Confidence 34555589999999999999875 68899999986432 233456889999988763
No 71
>cd05062 PTKc_IGF-1R Catalytic domain of the Protein Tyrosine Kinase, Insulin-like Growth Factor-1 Receptor. Protein Tyrosine Kinase (PTK) family; Insulin-like Growth Factor-1 Receptor (IGF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. IGF-1R is a receptor tyr kinases (RTK) that is composed of two alphabeta heterodimers. Binding of the ligand (IGF-1 or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, which stimulates downstream kinase activities and biological function. IGF-1R signaling is important in the differentiation, growth, and survival of normal cells. In cancer cells, wh
Probab=95.71 E-value=0.011 Score=58.71 Aligned_cols=56 Identities=32% Similarity=0.577 Sum_probs=42.2
Q ss_pred hhccccccceeccCCCccEEEEEeC------CCCEEEEEEccccC-CcCHHHHHHHHHHhhcc
Q 008872 493 ATNNFQLANKLGQGGFGPVYKGKLQ------DGQEIAVKRLSKAS-GQGQEEFMNEVMIHKDK 548 (550)
Q Consensus 493 AT~~Fs~~~~LG~G~fG~VYKG~L~------~g~~VAVKrL~~~s-~~~~~eF~~Ev~~i~~l 548 (550)
++++|...++||+|+||.||+|... .+..||||++.... .....+|.+|+.++.++
T Consensus 4 ~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~~~~~~~aik~~~~~~~~~~~~~~~~e~~~l~~l 66 (277)
T cd05062 4 AREKITMSRELGQGSFGMVYEGIAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKEF 66 (277)
T ss_pred cHHHceeeeeeccccCCeEEEEEeccCCCCCceeEEEEEeccccCCHHHHHHHHHHHHHHHhC
Confidence 4556777799999999999998753 24679999985332 23356799999988765
No 72
>cd05093 PTKc_TrkB Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase B. Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase B (TrkB); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkB is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkB to its ligands, brain-derived neurotrophic factor (BDNF) or neurotrophin 4 (NT4), results in receptor oligomerization and activation of the catalytic domain. TrkB is broadly
Probab=95.69 E-value=0.011 Score=59.31 Aligned_cols=54 Identities=31% Similarity=0.493 Sum_probs=41.8
Q ss_pred cccccceeccCCCccEEEEEeC------CCCEEEEEEccccCCcCHHHHHHHHHHhhccc
Q 008872 496 NFQLANKLGQGGFGPVYKGKLQ------DGQEIAVKRLSKASGQGQEEFMNEVMIHKDKV 549 (550)
Q Consensus 496 ~Fs~~~~LG~G~fG~VYKG~L~------~g~~VAVKrL~~~s~~~~~eF~~Ev~~i~~l~ 549 (550)
+|...+.||+|+||.||++... ++..+|||.+........++|.+|+.++.++.
T Consensus 6 ~~~~~~~lg~G~~~~v~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~e~~~l~~l~ 65 (288)
T cd05093 6 NIVLKRELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDASDNARKDFHREAELLTNLQ 65 (288)
T ss_pred HeeeccccCCcCCeeEEeeEeccCCCCCcceEEEEEecCCcCHHHHHHHHHHHHHHHhCC
Confidence 3455589999999999999852 24568999997555455678999999998764
No 73
>cd05109 PTKc_HER2 Catalytic domain of the Protein Tyrosine Kinase, HER2. Protein Tyrosine Kinase (PTK) family; HER2 (ErbB2, HER2/neu); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER2 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve
Probab=95.64 E-value=0.013 Score=58.23 Aligned_cols=52 Identities=33% Similarity=0.607 Sum_probs=38.8
Q ss_pred ccccceeccCCCccEEEEEe-CCCC----EEEEEEcccc-CCcCHHHHHHHHHHhhcc
Q 008872 497 FQLANKLGQGGFGPVYKGKL-QDGQ----EIAVKRLSKA-SGQGQEEFMNEVMIHKDK 548 (550)
Q Consensus 497 Fs~~~~LG~G~fG~VYKG~L-~~g~----~VAVKrL~~~-s~~~~~eF~~Ev~~i~~l 548 (550)
|...++||+|+||+||||.. ++|. .||||.+... .....++|.+|+.++.++
T Consensus 9 ~~~~~~lg~G~~g~vy~~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~e~~~l~~~ 66 (279)
T cd05109 9 LKKVKVLGSGAFGTVYKGIWIPDGENVKIPVAIKVLRENTSPKANKEILDEAYVMAGV 66 (279)
T ss_pred eeeeeecCCCCCceEEEEEEecCCCccceEEEEEEecCCCCHHHHHHHHHHHHHHHhc
Confidence 44458999999999999985 4555 4899998543 233356899999888765
No 74
>cd05069 PTKc_Yes Catalytic domain of the Protein Tyrosine Kinase, Yes. Protein Tyrosine Kinase (PTK) family; Yes kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Yes (or c-Yes) is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine an
Probab=95.64 E-value=0.02 Score=56.34 Aligned_cols=50 Identities=36% Similarity=0.518 Sum_probs=40.6
Q ss_pred ccceeccCCCccEEEEEeCCCCEEEEEEccccCCcCHHHHHHHHHHhhccc
Q 008872 499 LANKLGQGGFGPVYKGKLQDGQEIAVKRLSKASGQGQEEFMNEVMIHKDKV 549 (550)
Q Consensus 499 ~~~~LG~G~fG~VYKG~L~~g~~VAVKrL~~~s~~~~~eF~~Ev~~i~~l~ 549 (550)
-..+||+|++|.||++...++..||+|++... ....+.|.+|+.++.++.
T Consensus 10 ~~~~ig~g~~~~v~~~~~~~~~~~~lK~~~~~-~~~~~~~~~E~~~l~~l~ 59 (260)
T cd05069 10 LDVKLGQGCFGEVWMGTWNGTTKVAIKTLKPG-TMMPEAFLQEAQIMKKLR 59 (260)
T ss_pred eeeeecCcCCCeEEEEEEcCCceEEEEEcccC-CccHHHHHHHHHHHHhCC
Confidence 33789999999999999888778999998543 344678999999998763
No 75
>cd06656 STKc_PAK3 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 3. Serine/threonine kinases (STKs), p21-activated kinase (PAK) 3, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK3 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding
Probab=95.59 E-value=0.019 Score=57.96 Aligned_cols=52 Identities=29% Similarity=0.551 Sum_probs=41.9
Q ss_pred ccccceeccCCCccEEEEEe-CCCCEEEEEEccccCCcCHHHHHHHHHHhhcc
Q 008872 497 FQLANKLGQGGFGPVYKGKL-QDGQEIAVKRLSKASGQGQEEFMNEVMIHKDK 548 (550)
Q Consensus 497 Fs~~~~LG~G~fG~VYKG~L-~~g~~VAVKrL~~~s~~~~~eF~~Ev~~i~~l 548 (550)
|...++||+|+||.||++.- .+++.||||.+........+.|.+|+.++.++
T Consensus 21 y~~~~~lg~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~~ 73 (297)
T cd06656 21 YTRFEKIGQGASGTVYTAIDIATGQEVAIKQMNLQQQPKKELIINEILVMREN 73 (297)
T ss_pred ceeeeeeccCCCeEEEEEEECCCCCEEEEEEEecCccchHHHHHHHHHHHHhC
Confidence 44557899999999999985 57899999999654444567789999988765
No 76
>KOG1035 consensus eIF-2alpha kinase GCN2 [Translation, ribosomal structure and biogenesis]
Probab=95.58 E-value=0.0054 Score=70.69 Aligned_cols=56 Identities=30% Similarity=0.472 Sum_probs=42.4
Q ss_pred hccccccceeccCCCccEEEEEe-CCCCEEEEEEccccC-CcCHHHHHHHHHHhhccc
Q 008872 494 TNNFQLANKLGQGGFGPVYKGKL-QDGQEIAVKRLSKAS-GQGQEEFMNEVMIHKDKV 549 (550)
Q Consensus 494 T~~Fs~~~~LG~G~fG~VYKG~L-~~g~~VAVKrL~~~s-~~~~~eF~~Ev~~i~~l~ 549 (550)
-+.|-+-.+||+||||.|||..= -||+..||||+.... ...-.....||+++|||.
T Consensus 478 ~~DFEEL~lLGkGGFG~VvkVRNKlDGr~YAIKKIpl~~s~~~~skI~rEVk~LArLn 535 (1351)
T KOG1035|consen 478 LNDFEELELLGKGGFGSVVKVRNKLDGREYAIKKIPLKASDKLYSKILREVKLLARLN 535 (1351)
T ss_pred hhhhHHHHHhcCCCCceEEEEeecccchhhhhhhccCchHHHHHHHHHHHHHHHhhcC
Confidence 34566667999999999999853 389999999995432 222345778999999974
No 77
>cd07854 STKc_MAPK4_6 Catalytic domain of the Serine/Threonine Kinases, Mitogen-Activated Protein Kinases 4 and 6. Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 4 (MAPK4) and MAPK6 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK4/6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. MAPK4 is also called ERK4 or p63MAPK, while MAPK6 is also called ERK3 or p97MAPK. MAPK4 and MAPK6 are atypical MAPKs that are not regulated by MAP2Ks. MAPK6 is expressed ubiquitously with highest amounts in brain and skeletal muscle. It may be involved in the control of cell differentiation by negatively regulating cell cycle progressi
Probab=95.57 E-value=0.02 Score=59.10 Aligned_cols=54 Identities=20% Similarity=0.254 Sum_probs=43.5
Q ss_pred cccccceeccCCCccEEEEEe-CCCCEEEEEEccccCCcCHHHHHHHHHHhhccc
Q 008872 496 NFQLANKLGQGGFGPVYKGKL-QDGQEIAVKRLSKASGQGQEEFMNEVMIHKDKV 549 (550)
Q Consensus 496 ~Fs~~~~LG~G~fG~VYKG~L-~~g~~VAVKrL~~~s~~~~~eF~~Ev~~i~~l~ 549 (550)
.|...+.||+|+||.||+|.- ..|..||||++........+.+.+|++++.++.
T Consensus 6 ~y~~~~~Lg~g~~g~vy~~~~~~~~~~v~iK~i~~~~~~~~~~~~~Ei~~l~~l~ 60 (342)
T cd07854 6 RYMDLRPLGCGSNGLVFSAVDSDCDKRVAVKKIVLTDPQSVKHALREIKIIRRLD 60 (342)
T ss_pred ceEEEEEecCCCCEEEEEEEECCCCcEEEEEEEecCCCchHHHHHHHHHHHHhcC
Confidence 355558999999999999987 458899999986555556678999999988764
No 78
>cd07856 STKc_Sty1_Hog1 Catalytic domain of the Serine/Threonine Kinases, Fungal Mitogen-Activated Protein Kinases Sty1 and Hog1. Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) Sty1/Hog1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sty1/Hog1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs Sty1 from Schizosaccharomyces pombe, Hog1 from Saccharomyces cerevisiae, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. Sty1 and Hog1 are stress-activated MAPKs that partipate in transcriptional regulation in response to stress. Sty1 is activated in response to oxidative stress, osmotic stress, and U
Probab=95.56 E-value=0.015 Score=59.76 Aligned_cols=61 Identities=23% Similarity=0.320 Sum_probs=47.2
Q ss_pred HHHHhhccccccceeccCCCccEEEEEe-CCCCEEEEEEcccc--CCcCHHHHHHHHHHhhccc
Q 008872 489 ELANATNNFQLANKLGQGGFGPVYKGKL-QDGQEIAVKRLSKA--SGQGQEEFMNEVMIHKDKV 549 (550)
Q Consensus 489 eL~~AT~~Fs~~~~LG~G~fG~VYKG~L-~~g~~VAVKrL~~~--s~~~~~eF~~Ev~~i~~l~ 549 (550)
++...+++|...++||+|+||.||++.- .++..||||++... .....+.+..|+.++.++.
T Consensus 4 ~~~~~~~~y~~~~~ig~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~ 67 (328)
T cd07856 4 TVFEITNRYVDLQPVGMGAFGLVCSARDQLTGQNVAIKKIMKPFSTPVLAKRTYRELKLLKHLR 67 (328)
T ss_pred ceeccccceEEEEeecccCCeEEEEEEECCCCCEEEEEEecccccccchhHHHHHHHHHHHhcC
Confidence 3445677788889999999999999975 46889999998532 2334567889999988764
No 79
>cd05596 STKc_ROCK Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase. Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK is also referred to as Rho-associated kinase or simply as Rho kinase. It contains an N-terminal extension, a catalytic kinase domain, and a long C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain. It is activated via in
Probab=95.55 E-value=0.011 Score=61.97 Aligned_cols=57 Identities=26% Similarity=0.317 Sum_probs=43.3
Q ss_pred hhccccccceeccCCCccEEEEEeC-CCCEEEEEEcccc---CCcCHHHHHHHHHHhhccc
Q 008872 493 ATNNFQLANKLGQGGFGPVYKGKLQ-DGQEIAVKRLSKA---SGQGQEEFMNEVMIHKDKV 549 (550)
Q Consensus 493 AT~~Fs~~~~LG~G~fG~VYKG~L~-~g~~VAVKrL~~~---s~~~~~eF~~Ev~~i~~l~ 549 (550)
..++|...++||+|+||.||++... .++.+|||++... .....+.|.+|+.++.++.
T Consensus 41 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~il~~~~ 101 (370)
T cd05596 41 KAEDFDVIKVIGRGAFGEVQLVRHKSSKQVYAMKLLSKFEMIKRSDSAFFWEERDIMAHAN 101 (370)
T ss_pred CHHHcEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhhHHHHHHHHHHHHhCC
Confidence 3456777789999999999999874 5789999998532 2233456889999988763
No 80
>cd05046 PTK_CCK4 Pseudokinase domain of the Protein Tyrosine Kinase, Colon Carcinoma Kinase 4. Protein Tyrosine Kinase (PTK) family; Colon Carcinoma Kinase 4 (CCK4); pseudokinase domain. The PTKc (catalytic domain) family, to which this subfamily belongs, includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CCK4, also called protein tyrosine kinase 7 (PTK7), is an orphan receptor tyr kinase (RTK) containing an extracellular region with seven immunoglobulin domains, a transmembrane segment, and an intracellular inactive pseudokinase domain. Studies in mice reveal that CCK4 is essential for neural development. Mouse embryos containing a truncated CCK4 die perinatally and display craniorachischisis, a severe form of neural tube defect. The mechanism of action of the CCK4 pseudokinase is s
Probab=95.54 E-value=0.016 Score=57.43 Aligned_cols=54 Identities=31% Similarity=0.457 Sum_probs=41.3
Q ss_pred cccccceeccCCCccEEEEEeC------CCCEEEEEEccccCCc-CHHHHHHHHHHhhccc
Q 008872 496 NFQLANKLGQGGFGPVYKGKLQ------DGQEIAVKRLSKASGQ-GQEEFMNEVMIHKDKV 549 (550)
Q Consensus 496 ~Fs~~~~LG~G~fG~VYKG~L~------~g~~VAVKrL~~~s~~-~~~eF~~Ev~~i~~l~ 549 (550)
+|.....||+|+||.||++... +...||+|.+...... ..++|.+|+.++.++.
T Consensus 6 ~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~E~~~l~~l~ 66 (275)
T cd05046 6 NLQEITTLGRGEFGEVFLAKAKGIEEEGGETLVLVKALQKTKDENLQSEFRRELDMFRKLS 66 (275)
T ss_pred hceeeeeecccceeEEEEEEeccCCcCCCcceEEEEccCCccchHHHHHHHHHHHHHHhcC
Confidence 3555578999999999999863 2457999998654333 3578999999998874
No 81
>cd07878 STKc_p38beta_MAPK11 Catalytic domain of the Serine/Threonine Kinase, p38beta Mitogen-Activated Protein Kinase. Serine/Threonine Kinases (STKs), p38beta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38beta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38beta, also called MAPK11, is
Probab=95.51 E-value=0.02 Score=59.13 Aligned_cols=55 Identities=25% Similarity=0.319 Sum_probs=41.6
Q ss_pred ccccccceeccCCCccEEEEEe-CCCCEEEEEEcccc--CCcCHHHHHHHHHHhhccc
Q 008872 495 NNFQLANKLGQGGFGPVYKGKL-QDGQEIAVKRLSKA--SGQGQEEFMNEVMIHKDKV 549 (550)
Q Consensus 495 ~~Fs~~~~LG~G~fG~VYKG~L-~~g~~VAVKrL~~~--s~~~~~eF~~Ev~~i~~l~ 549 (550)
+.|.....||+|+||.||++.. ..+..||||++... .....+++.+|+.++.++.
T Consensus 15 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~ 72 (343)
T cd07878 15 ERYQNLTPVGSGAYGSVCSAYDTRLRQKVAVKKLSRPFQSLIHARRTYRELRLLKHMK 72 (343)
T ss_pred hhhhhheecccCCCeEEEEEEECCCCCEEEEEEeCchhhhhHHHHHHHHHHHHHHhcC
Confidence 4455557899999999999986 45789999998542 2233467889999988763
No 82
>cd05092 PTKc_TrkA Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase A. Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase A (TrkA); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkA is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkA to its ligand, nerve growth factor (NGF), results in receptor oligomerization and activation of the catalytic domain. TrkA is expressed mainly in neural-crest-derived sensory
Probab=95.51 E-value=0.016 Score=57.87 Aligned_cols=50 Identities=30% Similarity=0.447 Sum_probs=40.2
Q ss_pred cceeccCCCccEEEEEeC------CCCEEEEEEccccCCcCHHHHHHHHHHhhccc
Q 008872 500 ANKLGQGGFGPVYKGKLQ------DGQEIAVKRLSKASGQGQEEFMNEVMIHKDKV 549 (550)
Q Consensus 500 ~~~LG~G~fG~VYKG~L~------~g~~VAVKrL~~~s~~~~~eF~~Ev~~i~~l~ 549 (550)
..+||+|+||.||++..+ ++..+|+|.+........++|.+|+.++.++.
T Consensus 10 ~~~lg~g~~g~v~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~l~ 65 (280)
T cd05092 10 KWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLTVLQ 65 (280)
T ss_pred ccccCCccCCeEEEeEEecCCCCCCceEEEEEecCcCCHHHHHHHHHHHHHHhcCC
Confidence 379999999999999742 35689999987655555678999999998764
No 83
>PTZ00263 protein kinase A catalytic subunit; Provisional
Probab=95.47 E-value=0.017 Score=59.40 Aligned_cols=53 Identities=28% Similarity=0.396 Sum_probs=41.3
Q ss_pred ccccceeccCCCccEEEEEeC-CCCEEEEEEcccc---CCcCHHHHHHHHHHhhccc
Q 008872 497 FQLANKLGQGGFGPVYKGKLQ-DGQEIAVKRLSKA---SGQGQEEFMNEVMIHKDKV 549 (550)
Q Consensus 497 Fs~~~~LG~G~fG~VYKG~L~-~g~~VAVKrL~~~---s~~~~~eF~~Ev~~i~~l~ 549 (550)
|...+.||+|+||.||++... +++.||||.+... .....+++.+|+.++.++.
T Consensus 20 y~~~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~ 76 (329)
T PTZ00263 20 FEMGETLGTGSFGRVRIAKHKGTGEYYAIKCLKKREILKMKQVQHVAQEKSILMELS 76 (329)
T ss_pred eEEEEEEEecCCeEEEEEEECCCCCEEEEEEEEHHHHhhhhhHHHHHHHHHHHHhCC
Confidence 444589999999999999885 5889999998532 2234567999999988764
No 84
>cd05061 PTKc_InsR Catalytic domain of the Protein Tyrosine Kinase, Insulin Receptor. Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR is a receptor tyr kinase (RTK) that is composed of two alphabeta heterodimers. Binding of the insulin ligand to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological function. InsR signaling plays an important role in many cellular processes including glucose homeostasis, glycogen synthesis, lipid and protein meta
Probab=95.43 E-value=0.016 Score=58.15 Aligned_cols=56 Identities=34% Similarity=0.579 Sum_probs=40.3
Q ss_pred hccccccceeccCCCccEEEEEeCC------CCEEEEEEccccC-CcCHHHHHHHHHHhhccc
Q 008872 494 TNNFQLANKLGQGGFGPVYKGKLQD------GQEIAVKRLSKAS-GQGQEEFMNEVMIHKDKV 549 (550)
Q Consensus 494 T~~Fs~~~~LG~G~fG~VYKG~L~~------g~~VAVKrL~~~s-~~~~~eF~~Ev~~i~~l~ 549 (550)
++.|....+||+|+||.||+|...+ +..||||.+.... .....+|.+|+.++.++.
T Consensus 5 ~~~~~i~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~e~~~l~~l~ 67 (288)
T cd05061 5 REKITLLRELGQGSFGMVYEGNARDIIKGEAETRVAVKTVNESASLRERIEFLNEASVMKGFT 67 (288)
T ss_pred HHHceeeeeecCCCCcEEEEEEEeccCCCCcceEEEEEECCCcCCHHHHHHHHHHHHHHHhCC
Confidence 3445556899999999999997532 4589999985332 223457899999887763
No 85
>KOG0591 consensus NIMA (never in mitosis)-related G2-specific serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]
Probab=95.39 E-value=0.0053 Score=60.21 Aligned_cols=49 Identities=31% Similarity=0.604 Sum_probs=39.8
Q ss_pred ceeccCCCccEEEEE-eCCCCEEEEEEccc--cCCcCHHHHHHHHHHhhccc
Q 008872 501 NKLGQGGFGPVYKGK-LQDGQEIAVKRLSK--ASGQGQEEFMNEVMIHKDKV 549 (550)
Q Consensus 501 ~~LG~G~fG~VYKG~-L~~g~~VAVKrL~~--~s~~~~~eF~~Ev~~i~~l~ 549 (550)
.+||+|.||+|||+. +.+|..||.|++.- ...+.......|+.++.+|.
T Consensus 25 ~~IG~GsFg~vykv~~~~~g~l~a~K~i~f~~md~k~rq~~v~Ei~lLkQL~ 76 (375)
T KOG0591|consen 25 KKIGRGSFGEVYKVQCLLDGKLVALKKIQFGMMDAKARQDCVKEISLLKQLN 76 (375)
T ss_pred HHHcCCcchheEEeeeccCcchhhhhhcchhhccHHHHHHHHHHHHHHHhcC
Confidence 789999999999984 58999999999853 23444567899999998764
No 86
>cd06657 STKc_PAK4 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 4. Serine/threonine kinases (STKs), p21-activated kinase (PAK) 4, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK4 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK4 regulates cell mo
Probab=95.37 E-value=0.021 Score=57.53 Aligned_cols=49 Identities=33% Similarity=0.481 Sum_probs=40.0
Q ss_pred ceeccCCCccEEEEEe-CCCCEEEEEEccccCCcCHHHHHHHHHHhhccc
Q 008872 501 NKLGQGGFGPVYKGKL-QDGQEIAVKRLSKASGQGQEEFMNEVMIHKDKV 549 (550)
Q Consensus 501 ~~LG~G~fG~VYKG~L-~~g~~VAVKrL~~~s~~~~~eF~~Ev~~i~~l~ 549 (550)
.+||+|+||.||++.. .++..||||++........+.|.+|+.++.++.
T Consensus 26 ~~lg~g~~g~v~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~e~~~l~~l~ 75 (292)
T cd06657 26 IKIGEGSTGIVCIATVKSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQ 75 (292)
T ss_pred HHcCCCCCeEEEEEEEcCCCeEEEEEEecccchhHHHHHHHHHHHHHhcC
Confidence 4799999999999988 468899999986544445667999999887753
No 87
>cd07849 STKc_ERK1_2_like Catalytic domain of Extracellular signal-Regulated Kinase 1 and 2-like Serine/Threonine Kinases. Serine/Threonine Kinases (STKs), Extracellular signal-regulated kinases 1 and 2 (ERK1/2) and Fus3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This ERK1/2-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the mitogen-activated protein kinases (MAPKs) ERK1, ERK2, baker's yeast Fus3, and similar proteins. MAPK pathways are important mediators of cellular responses to extracellular signals. ERK1/2 activation is preferentially by mitogenic factors, differentiation stimuli, and cytokines, through a kinase cascade involving the MAPK kinases MEK1/2 and a MAPK kinase
Probab=95.36 E-value=0.025 Score=58.24 Aligned_cols=55 Identities=20% Similarity=0.323 Sum_probs=42.5
Q ss_pred ccccccceeccCCCccEEEEEe-CCCCEEEEEEccccC-CcCHHHHHHHHHHhhccc
Q 008872 495 NNFQLANKLGQGGFGPVYKGKL-QDGQEIAVKRLSKAS-GQGQEEFMNEVMIHKDKV 549 (550)
Q Consensus 495 ~~Fs~~~~LG~G~fG~VYKG~L-~~g~~VAVKrL~~~s-~~~~~eF~~Ev~~i~~l~ 549 (550)
++|...++||+|+||.||+|+- .+|+.||||++.... ....+.+..|+.++.++.
T Consensus 5 ~~y~i~~~lg~G~~g~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~ 61 (336)
T cd07849 5 PRYQNLSYIGEGAYGMVCSATHKPTGVKVAIKKISPFEHQTFCQRTLREIKILRRFK 61 (336)
T ss_pred cceEEEEEEEecCCeEEEEEEEcCCCCeEEEEEecccccchhHHHHHHHHHHHHhCC
Confidence 4566668999999999999975 568999999985322 233567889999888763
No 88
>cd05144 RIO2_C RIO kinase family; RIO2, C-terminal catalytic domain. The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO2 is present in archaea and eukaryotes. It contains an N-terminal winged helix (wHTH) domain and a C-terminal RIO kinase catalytic domain. The wHTH domain is primarily seen in DNA-binding proteins, although some wHTH dom
Probab=95.35 E-value=0.029 Score=53.15 Aligned_cols=32 Identities=31% Similarity=0.369 Sum_probs=27.8
Q ss_pred ccccceeccCCCccEEEEEeCCCCEEEEEEcc
Q 008872 497 FQLANKLGQGGFGPVYKGKLQDGQEIAVKRLS 528 (550)
Q Consensus 497 Fs~~~~LG~G~fG~VYKG~L~~g~~VAVKrL~ 528 (550)
+...+.||+|+||.||++..++|+.||||+..
T Consensus 17 ~~~~~~i~~G~~g~Vy~~~~~~g~~vavK~~~ 48 (198)
T cd05144 17 ESLGNQIGVGKESDVYLALDPDGNPVALKFHR 48 (198)
T ss_pred hhcCCccccCcceEEEEEEcCCCCEEEEEEEe
Confidence 33448899999999999999899999999864
No 89
>cd05052 PTKc_Abl Catalytic domain of the Protein Tyrosine Kinase, Abelson kinase. Protein Tyrosine Kinase (PTK) family; Abelson (Abl) kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Abl (or c-Abl) is a ubiquitously-expressed cytoplasmic (or nonreceptor) tyr kinase that contains SH3, SH2, and tyr kinase domains in its N-terminal region, as well as nuclear localization motifs, a putative DNA-binding domain, and F- and G-actin binding domains in its C-terminal tail. It also contains a short autoinhibitory cap region in its N-terminus. Abl is normally inactive and requires phosphorylation and myristoylation for activation. Abl function depends on its subcellular localization. In the cytoplasm, Abl plays
Probab=95.34 E-value=0.022 Score=56.15 Aligned_cols=51 Identities=33% Similarity=0.591 Sum_probs=41.1
Q ss_pred ccccceeccCCCccEEEEEeCC-CCEEEEEEccccCCcCHHHHHHHHHHhhcc
Q 008872 497 FQLANKLGQGGFGPVYKGKLQD-GQEIAVKRLSKASGQGQEEFMNEVMIHKDK 548 (550)
Q Consensus 497 Fs~~~~LG~G~fG~VYKG~L~~-g~~VAVKrL~~~s~~~~~eF~~Ev~~i~~l 548 (550)
|...++||+|++|.||+|...+ ++.||+|++... ....++|.+|+.++.++
T Consensus 8 ~~~~~~ig~g~~~~v~~~~~~~~~~~~~~K~~~~~-~~~~~~~~~e~~~l~~l 59 (263)
T cd05052 8 ITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKED-TMEVEEFLKEAAVMKEI 59 (263)
T ss_pred eEEeeecCCcccceEEEEEEecCCceEEEEEecCC-chHHHHHHHHHHHHHhC
Confidence 4555899999999999998754 789999998643 34467899999998775
No 90
>cd06636 STKc_MAP4K4_6 Catalytic domain of the Protein Serine/Threonine Kinases, Mitogen-Activated Protein Kinase Kinase Kinase Kinase 4 and 6. Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 4 (MAPKKKK4 or MAP4K4) and MAPKKKK6 (or MAP4K6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K4/MAP4K6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain. MAP4Ks (or MAPKKKKs) are involved in MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Ea
Probab=95.33 E-value=0.021 Score=56.87 Aligned_cols=62 Identities=29% Similarity=0.517 Sum_probs=47.0
Q ss_pred cHHHHHHhhccccccceeccCCCccEEEEEe-CCCCEEEEEEccccCCcCHHHHHHHHHHhhcc
Q 008872 486 NFEELANATNNFQLANKLGQGGFGPVYKGKL-QDGQEIAVKRLSKASGQGQEEFMNEVMIHKDK 548 (550)
Q Consensus 486 s~~eL~~AT~~Fs~~~~LG~G~fG~VYKG~L-~~g~~VAVKrL~~~s~~~~~eF~~Ev~~i~~l 548 (550)
++.++..+.+.|....+||+|+||.||+|.. .+++.+|+|.+... .....++..|+.++.++
T Consensus 7 ~~~~~~~~~~~~~~~~~lg~g~~~~v~~~~~~~~~~~~a~K~~~~~-~~~~~~~~~e~~~l~~~ 69 (282)
T cd06636 7 DLSALRDPAGIFELVEVVGNGTYGQVYKGRHVKTGQLAAIKVMDVT-EDEEEEIKLEINMLKKY 69 (282)
T ss_pred hhhhhcChhhhhhhheeeccCCCeEEEEEEEcCCCcEEEEEEEecC-hHHHHHHHHHHHHHHHh
Confidence 4455556666677678999999999999988 45789999998543 23456788998888765
No 91
>cd05056 PTKc_FAK Catalytic domain of the Protein Tyrosine Kinase, Focal Adhesion Kinase. Protein Tyrosine Kinase (PTK) family; Focal Adhesion Kinase (FAK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FAK is a cytoplasmic (or nonreceptor) tyr kinase that contains an autophosphorylation site and a FERM domain at the N-terminus, a central tyr kinase domain, proline-rich regions, and a C-terminal FAT (focal adhesion targeting) domain. FAK activity is dependent on integrin-mediated cell adhesion, which facilitates N-terminal autophosphorylation. Full activation is achieved by the phosphorylation of its two adjacent A-loop tyrosines. FAK is important in mediating signaling initiated at sites of cell adhesions
Probab=95.29 E-value=0.018 Score=56.96 Aligned_cols=53 Identities=28% Similarity=0.474 Sum_probs=39.8
Q ss_pred ccccceeccCCCccEEEEEeCCC----CEEEEEEccccC-CcCHHHHHHHHHHhhccc
Q 008872 497 FQLANKLGQGGFGPVYKGKLQDG----QEIAVKRLSKAS-GQGQEEFMNEVMIHKDKV 549 (550)
Q Consensus 497 Fs~~~~LG~G~fG~VYKG~L~~g----~~VAVKrL~~~s-~~~~~eF~~Ev~~i~~l~ 549 (550)
+...++||+|+||.||+|...+. ..||||+..... .+..++|.+|+.++.++.
T Consensus 8 ~~~~~~lg~g~~g~v~~~~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~e~~~l~~~~ 65 (270)
T cd05056 8 ITLGRCIGEGQFGDVYQGVYMSPENEKIAVAVKTCKNCTSPSVREKFLQEAYIMRQFD 65 (270)
T ss_pred ceeeeeeCCccceeEEEEEEecCCCCCcceEEEecCCcCCHHHHHHHHHHHHHHHhCC
Confidence 33448999999999999987442 468999885433 334568999999988763
No 92
>KOG0201 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=95.29 E-value=0.022 Score=59.13 Aligned_cols=52 Identities=21% Similarity=0.392 Sum_probs=38.5
Q ss_pred ccccceeccCCCccEEEEEeCC-CCEEEEEEcccc-CCcCHHHHHHHHHHhhcc
Q 008872 497 FQLANKLGQGGFGPVYKGKLQD-GQEIAVKRLSKA-SGQGQEEFMNEVMIHKDK 548 (550)
Q Consensus 497 Fs~~~~LG~G~fG~VYKG~L~~-g~~VAVKrL~~~-s~~~~~eF~~Ev~~i~~l 548 (550)
|..-.+||+|+||.||||.-.. ++.||+|.++.. .....++...|+.+++..
T Consensus 15 ~~~~~~IgrGsfG~Vyk~~d~~t~k~vAiKii~Le~~~deIediqqei~~Ls~~ 68 (467)
T KOG0201|consen 15 YTKLELIGRGSFGEVYKAIDNKTKKVVAIKIIDLEEAEDEIEDIQQEISVLSQC 68 (467)
T ss_pred cccchhccccccceeeeeeeccccceEEEEEechhhcchhhHHHHHHHHHHHhc
Confidence 3334689999999999998633 678999998643 233346678888888765
No 93
>cd01100 APPLE_Factor_XI_like Subfamily of PAN/APPLE-like domains; present in plasma prekallikrein/coagulation factor XI, microneme antigen proteins, and a few prokaryotic proteins. PAN/APPLE domains fulfill diverse biological functions by mediating protein-protein or protein-carbohydrate interactions.
Probab=95.28 E-value=0.018 Score=45.33 Aligned_cols=31 Identities=19% Similarity=0.701 Sum_probs=25.8
Q ss_pred chhhHHhhccCCCceEeEeccCC-cceeeeec
Q 008872 360 NEDKCKDQCSNNCSCKAYAYEIG-VGCMIWTH 390 (550)
Q Consensus 360 ~~~~C~~~Cl~nCsC~a~~~~~g-~~C~~~~~ 390 (550)
+.++|++.|+.+|.|.+|.|..+ ..|+++..
T Consensus 26 s~~~Cq~~C~~~~~C~afT~~~~~~~C~lk~~ 57 (73)
T cd01100 26 SAEQCQAACTADPGCLAFTYNTKSKKCFLKSS 57 (73)
T ss_pred CHHHHHHHcCCCCCceEEEEECCCCeEEcccC
Confidence 78999999999999999999754 34987544
No 94
>cd06655 STKc_PAK2 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 2. Serine/threonine kinases (STKs), p21-activated kinase (PAK) 2, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK2 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding
Probab=95.27 E-value=0.028 Score=56.71 Aligned_cols=53 Identities=28% Similarity=0.498 Sum_probs=42.9
Q ss_pred ccccceeccCCCccEEEEEe-CCCCEEEEEEccccCCcCHHHHHHHHHHhhccc
Q 008872 497 FQLANKLGQGGFGPVYKGKL-QDGQEIAVKRLSKASGQGQEEFMNEVMIHKDKV 549 (550)
Q Consensus 497 Fs~~~~LG~G~fG~VYKG~L-~~g~~VAVKrL~~~s~~~~~eF~~Ev~~i~~l~ 549 (550)
|....+||+|++|.||+|+- .+++.||||.+........+.+.+|+.++.++.
T Consensus 21 y~~~~~lg~g~~g~vy~~~~~~~~~~v~iK~~~~~~~~~~~~~~~e~~~l~~l~ 74 (296)
T cd06655 21 YTRYEKIGQGASGTVFTAIDVATGQEVAIKQINLQKQPKKELIINEILVMKELK 74 (296)
T ss_pred EEEEEEEecCCCeEEEEEEEcCCCcEEEEEEEecccCchHHHHHHHHHHHHhcC
Confidence 55557899999999999975 568999999996554455678999999988763
No 95
>cd06620 PKc_MAPKK_Byr1_like Catalytic domain of fungal Byr1-like dual-specificity MAP kinase kinases. Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal Byr1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include
Probab=95.27 E-value=0.02 Score=57.20 Aligned_cols=48 Identities=25% Similarity=0.307 Sum_probs=38.6
Q ss_pred ceeccCCCccEEEEEeC-CCCEEEEEEcccc-CCcCHHHHHHHHHHhhcc
Q 008872 501 NKLGQGGFGPVYKGKLQ-DGQEIAVKRLSKA-SGQGQEEFMNEVMIHKDK 548 (550)
Q Consensus 501 ~~LG~G~fG~VYKG~L~-~g~~VAVKrL~~~-s~~~~~eF~~Ev~~i~~l 548 (550)
++||+|+||+||++... +|+.||+|.+... .....++|.+|++++.++
T Consensus 11 ~~ig~g~~g~v~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~E~~~l~~l 60 (284)
T cd06620 11 SDLGAGNGGSVSKVKHIPTGTVMAKKVVHIGAKSSVRKQILRELQIMHEC 60 (284)
T ss_pred HHcCCCCCeEEEEEEEcCCCcEEEEEEEEecCcchHHHHHHHHHHHHHHc
Confidence 78999999999999864 5889999987533 233467899999998765
No 96
>cd07844 STKc_PCTAIRE_like Catalytic domain of PCTAIRE-like Serine/Threonine Kinases. Serine/Threonine Kinases (STKs), PCTAIRE-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily share sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. The association of PCTAIRE-like proteins with cyclins has not been widely studied, although PFTAIRE-1 has been shown to function as a CDK which is regulated by cyclin D3 as well as the
Probab=95.24 E-value=0.028 Score=56.28 Aligned_cols=53 Identities=28% Similarity=0.484 Sum_probs=40.6
Q ss_pred ccccceeccCCCccEEEEEeC-CCCEEEEEEccccC-CcCHHHHHHHHHHhhccc
Q 008872 497 FQLANKLGQGGFGPVYKGKLQ-DGQEIAVKRLSKAS-GQGQEEFMNEVMIHKDKV 549 (550)
Q Consensus 497 Fs~~~~LG~G~fG~VYKG~L~-~g~~VAVKrL~~~s-~~~~~eF~~Ev~~i~~l~ 549 (550)
|...++||+|++|.||+|... +++.||||.+.... ......+.+|+.++.++.
T Consensus 7 y~~~~~lg~g~~~~vy~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~E~~~l~~l~ 61 (291)
T cd07844 7 YKKLDKLGEGSYATVYKGRSKLTGQLVALKEIRLEHEEGAPFTAIREASLLKDLK 61 (291)
T ss_pred eeEEEEEeecCCeEEEEEEEcCCCcEEEEEEEecccccCCchhHHHHHHHHhhCC
Confidence 444579999999999999875 57899999985432 223456888999988763
No 97
>cd06614 STKc_PAK Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase. Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAK deregulation is associated with tumor development. PAKs from higher eukaryotes are classified into two grou
Probab=95.21 E-value=0.026 Score=56.42 Aligned_cols=56 Identities=30% Similarity=0.532 Sum_probs=44.7
Q ss_pred hhccccccceeccCCCccEEEEEeC-CCCEEEEEEccccCCcCHHHHHHHHHHhhccc
Q 008872 493 ATNNFQLANKLGQGGFGPVYKGKLQ-DGQEIAVKRLSKASGQGQEEFMNEVMIHKDKV 549 (550)
Q Consensus 493 AT~~Fs~~~~LG~G~fG~VYKG~L~-~g~~VAVKrL~~~s~~~~~eF~~Ev~~i~~l~ 549 (550)
++++|...+.||+|++|.||+|... +++.||+|++..... ..++|.+|++++.++.
T Consensus 17 ~~~~~~~~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~-~~~~~~~e~~~l~~l~ 73 (286)
T cd06614 17 PRELYKNLEKIGEGASGEVYKATDRATGKEVAIKKMRLRKQ-NKELIINEILIMKDCK 73 (286)
T ss_pred ccccchHhHhccCCCCeEEEEEEEccCCcEEEEEEEecCch-hHHHHHHHHHHHHHCC
Confidence 4455666689999999999999986 588999999964433 5678999999888763
No 98
>cd07880 STKc_p38gamma_MAPK12 Catalytic domain of the Serine/Threonine Kinase, p38gamma Mitogen-Activated Protein Kinase. Serine/Threonine Kinases (STKs), p38gamma subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38gamma subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38gamma, also called MAPK12
Probab=95.20 E-value=0.03 Score=57.92 Aligned_cols=57 Identities=19% Similarity=0.346 Sum_probs=43.1
Q ss_pred hhccccccceeccCCCccEEEEEe-CCCCEEEEEEcccc--CCcCHHHHHHHHHHhhccc
Q 008872 493 ATNNFQLANKLGQGGFGPVYKGKL-QDGQEIAVKRLSKA--SGQGQEEFMNEVMIHKDKV 549 (550)
Q Consensus 493 AT~~Fs~~~~LG~G~fG~VYKG~L-~~g~~VAVKrL~~~--s~~~~~eF~~Ev~~i~~l~ 549 (550)
..+.|...+.||+|+||.||++.. .+|..||||++... .....+.+.+|+.+|.++.
T Consensus 13 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~ 72 (343)
T cd07880 13 VPDRYRDLKQVGSGAYGTVCSALDRRTGAKVAIKKLYRPFQSELFAKRAYRELRLLKHMK 72 (343)
T ss_pred cccceEEEEEeeecCCeEEEEEEECCCCcEEEEEEecccccchHHHHHHHHHHHHHHhcC
Confidence 345566668999999999999985 46899999998532 2223456889999988763
No 99
>cd06650 PKc_MEK1 Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 1. Protein kinases (PKs), MAP/ERK kinase (MEK) 1 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 is a dual-specificity PK that phosphorylates and activates the downst
Probab=95.19 E-value=0.023 Score=58.47 Aligned_cols=54 Identities=20% Similarity=0.298 Sum_probs=41.2
Q ss_pred cccccceeccCCCccEEEEEeC-CCCEEEEEEcccc-CCcCHHHHHHHHHHhhccc
Q 008872 496 NFQLANKLGQGGFGPVYKGKLQ-DGQEIAVKRLSKA-SGQGQEEFMNEVMIHKDKV 549 (550)
Q Consensus 496 ~Fs~~~~LG~G~fG~VYKG~L~-~g~~VAVKrL~~~-s~~~~~eF~~Ev~~i~~l~ 549 (550)
+|...++||+|+||.||++... ++..+|+|.+... .....++|.+|++++.++.
T Consensus 6 ~y~~~~~lg~g~~g~V~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~E~~~l~~l~ 61 (333)
T cd06650 6 DFEKISELGAGNGGVVFKVSHKPSGLIMARKLIHLEIKPAIRNQIIRELQVLHECN 61 (333)
T ss_pred hhheeccccCCCCEEEEEEEECCCCcEEEEEEeecccCHHHHHHHHHHHHHHHHCC
Confidence 4555589999999999999885 5788999988543 2223467999999998763
No 100
>cd06659 STKc_PAK6 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 6. Serine/threonine kinases (STKs), p21-activated kinase (PAK) 6, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK6 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK6 may play a role i
Probab=95.18 E-value=0.027 Score=56.91 Aligned_cols=49 Identities=33% Similarity=0.476 Sum_probs=40.1
Q ss_pred ceeccCCCccEEEEEeC-CCCEEEEEEccccCCcCHHHHHHHHHHhhccc
Q 008872 501 NKLGQGGFGPVYKGKLQ-DGQEIAVKRLSKASGQGQEEFMNEVMIHKDKV 549 (550)
Q Consensus 501 ~~LG~G~fG~VYKG~L~-~g~~VAVKrL~~~s~~~~~eF~~Ev~~i~~l~ 549 (550)
.+||+|+||.||++... +++.||||.+........+.+.+|+.++.++.
T Consensus 27 ~~ig~g~~g~v~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~e~~~l~~l~ 76 (297)
T cd06659 27 IKIGEGSTGIVCIAREKHSGRQVAVKMMDLRKQQRRELLFNEVVIMRDYQ 76 (297)
T ss_pred hhcCCCCceeEEEEEEcCCCCEEEEEEEEecccchHHHHHHHHHHHHhCC
Confidence 57999999999999874 68999999996554555677999999887754
No 101
>cd06649 PKc_MEK2 Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 2. Protein kinases (PKs), MAP/ERK Kinase (MEK) 2 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK2 is a dual-specificity PK that phosphorylates and activates the downst
Probab=95.18 E-value=0.023 Score=58.40 Aligned_cols=54 Identities=20% Similarity=0.263 Sum_probs=41.4
Q ss_pred cccccceeccCCCccEEEEEeC-CCCEEEEEEcccc-CCcCHHHHHHHHHHhhccc
Q 008872 496 NFQLANKLGQGGFGPVYKGKLQ-DGQEIAVKRLSKA-SGQGQEEFMNEVMIHKDKV 549 (550)
Q Consensus 496 ~Fs~~~~LG~G~fG~VYKG~L~-~g~~VAVKrL~~~-s~~~~~eF~~Ev~~i~~l~ 549 (550)
+|...++||+|+||.||++... .|..+|+|.+... .....++|.+|+++|.++.
T Consensus 6 ~y~~~~~lg~G~~g~V~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~E~~~l~~l~ 61 (331)
T cd06649 6 DFERISELGAGNGGVVTKVQHKPSGLIMARKLIHLEIKPAIRNQIIRELQVLHECN 61 (331)
T ss_pred cceEEEeecCCCCEEEEEEEECCCCcEEEEEEeecccCHHHHHHHHHHHHHHHHCC
Confidence 4555578999999999999875 5788999998543 2223467999999998763
No 102
>KOG1006 consensus Mitogen-activated protein kinase (MAPK) kinase MKK4 [Signal transduction mechanisms]
Probab=95.16 E-value=0.012 Score=57.27 Aligned_cols=57 Identities=26% Similarity=0.391 Sum_probs=42.5
Q ss_pred cccHHHHHHhhccccccceeccCCCccEEEEEe-CCCCEEEEEEccccCC-cCHHHHHHHHHHhhc
Q 008872 484 VFNFEELANATNNFQLANKLGQGGFGPVYKGKL-QDGQEIAVKRLSKASG-QGQEEFMNEVMIHKD 547 (550)
Q Consensus 484 ~fs~~eL~~AT~~Fs~~~~LG~G~fG~VYKG~L-~~g~~VAVKrL~~~s~-~~~~eF~~Ev~~i~~ 547 (550)
.|+.++|+.- ..||.|+||+|+|-.. +.|+..||||++.... ...+.|+.|+.++-+
T Consensus 60 ~F~~~~Lqdl-------g~iG~G~fG~V~KM~hk~sg~~mAVKrIr~~n~~keq~rll~e~d~~mk 118 (361)
T KOG1006|consen 60 TFTSDNLQDL-------GEIGNGAFGTVNKMLHKPSGKLMAVKRIRSNNIEKEQKRLLMEHDTVMK 118 (361)
T ss_pred ccccchHHHH-------HHhcCCcchhhhhhhcCccCcEEEEEEeeeccchHHHHHHHHHHHHHHh
Confidence 4666666644 6899999999999876 6799999999965433 334578888877644
No 103
>cd05091 PTKc_Ror2 Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 2. Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 2 (Ror2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase cataly
Probab=95.11 E-value=0.023 Score=56.60 Aligned_cols=49 Identities=37% Similarity=0.577 Sum_probs=37.7
Q ss_pred ceeccCCCccEEEEEeCC------CCEEEEEEccccCCc-CHHHHHHHHHHhhccc
Q 008872 501 NKLGQGGFGPVYKGKLQD------GQEIAVKRLSKASGQ-GQEEFMNEVMIHKDKV 549 (550)
Q Consensus 501 ~~LG~G~fG~VYKG~L~~------g~~VAVKrL~~~s~~-~~~eF~~Ev~~i~~l~ 549 (550)
++||+|+||.||+|...+ +..||||++...... ..++|..|+.++.++.
T Consensus 11 ~~lg~G~~g~V~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~~~~l~ 66 (283)
T cd05091 11 EELGEDRFGKVYKGHLFGTAPGEQTQAVAIKTLKDKAEGPLREEFKHEAMMRSRLQ 66 (283)
T ss_pred HHhCCCCCCeEEEEEEecCCCCCceeEEEEEEccCCCCHHHHHHHHHHHHHHhcCC
Confidence 789999999999998743 468999999643322 2467999999888763
No 104
>cd05621 STKc_ROCK2 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 2. Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK2 (or ROK-alpha) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK2 was the first identified target of activated RhoA, and was found
Probab=95.11 E-value=0.023 Score=59.59 Aligned_cols=58 Identities=22% Similarity=0.270 Sum_probs=43.3
Q ss_pred HHhhccccccceeccCCCccEEEEEeC-CCCEEEEEEcccc---CCcCHHHHHHHHHHhhcc
Q 008872 491 ANATNNFQLANKLGQGGFGPVYKGKLQ-DGQEIAVKRLSKA---SGQGQEEFMNEVMIHKDK 548 (550)
Q Consensus 491 ~~AT~~Fs~~~~LG~G~fG~VYKG~L~-~g~~VAVKrL~~~---s~~~~~eF~~Ev~~i~~l 548 (550)
....++|...++||+|+||.||++... +++.+|+|.+... .....+.|.+|+.++.++
T Consensus 39 ~~~~~~y~~~~~lG~G~fg~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~i~~~~ 100 (370)
T cd05621 39 QMKAEDYDVVKVIGRGAFGEVQLVRHKSSQKVYAMKLLSKFEMIKRSDSAFFWEERDIMAFA 100 (370)
T ss_pred CCCHHHCeEEEEEEecCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhhHHHHHHHHHHHHhC
Confidence 334456777789999999999999875 4789999998532 223345688999888765
No 105
>cd06644 STKc_STK10_LOK Catalytic domain of the Protein Serine/Threonine Kinase, STK10 or Lymphocyte-oriented kinase. Serine/threonine kinases (STKs), STK10 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Other names for STK10 include lymphocyte-oriented kinase (LOK) and Xenopus polo-like kinase kinase 1 (xPlkk1). STK10 is highly expressed in lymphocytes and is responsible in regulating leukocyte function associated antigen (LFA-1)-mediated lymphocyte adhesion. It plays a role in regulating the CD28 responsive element in T cells, and may also function as a regulator of polo-like kinase 1 (Plk1), a protein which is overexpressed in multiple tumor types.
Probab=95.11 E-value=0.025 Score=56.76 Aligned_cols=49 Identities=35% Similarity=0.527 Sum_probs=40.5
Q ss_pred ceeccCCCccEEEEEeCC-CCEEEEEEccccCCcCHHHHHHHHHHhhccc
Q 008872 501 NKLGQGGFGPVYKGKLQD-GQEIAVKRLSKASGQGQEEFMNEVMIHKDKV 549 (550)
Q Consensus 501 ~~LG~G~fG~VYKG~L~~-g~~VAVKrL~~~s~~~~~eF~~Ev~~i~~l~ 549 (550)
++||+|+||.||+|.... +..+|+|.+........++|..|+.++.++.
T Consensus 18 ~~lg~g~~g~vy~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~l~ 67 (292)
T cd06644 18 GELGDGAFGKVYKAKNKETGALAAAKVIETKSEEELEDYMVEIEILATCN 67 (292)
T ss_pred heecCCCCeEEEEEEECCCCceEEEEEeccCCHHHHHHHHHHHHHHHhCC
Confidence 689999999999998854 7899999996555455678999999888763
No 106
>cd06611 STKc_SLK_like Catalytic domain of Ste20-like kinase-like Protein Serine/Threonine Kinases. Serine/threonine kinases (STKs), Ste20-like kinase (SLK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of the subfamily include SLK, STK10 (also called LOK for lymphocyte-oriented kinase), SmSLK (Schistosoma mansoni SLK), and related proteins. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It also plays a role in mediating actin reorganization. STK10 is responsible in regulating the CD28 responsive element in T cells, as well as leukocyte function associated anti
Probab=95.09 E-value=0.019 Score=57.18 Aligned_cols=53 Identities=32% Similarity=0.512 Sum_probs=41.8
Q ss_pred ccccceeccCCCccEEEEEeC-CCCEEEEEEccccCCcCHHHHHHHHHHhhccc
Q 008872 497 FQLANKLGQGGFGPVYKGKLQ-DGQEIAVKRLSKASGQGQEEFMNEVMIHKDKV 549 (550)
Q Consensus 497 Fs~~~~LG~G~fG~VYKG~L~-~g~~VAVKrL~~~s~~~~~eF~~Ev~~i~~l~ 549 (550)
|.-..+||+|++|.||++... ++..+|+|..........+.|..|++++.++.
T Consensus 7 ~~i~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~e~~~l~~l~ 60 (280)
T cd06611 7 WEIIGELGDGAFGKVYKAQHKETGLFAAAKIIQIESEEELEDFMVEIDILSECK 60 (280)
T ss_pred HHHHHHhcCCCCceEEEEEEcCCCcEEEEEEEeeCCHHHHHHHHHHHHHHHhCC
Confidence 333368999999999999885 57899999986544444568999999998864
No 107
>KOG0574 consensus STE20-like serine/threonine kinase MST [Signal transduction mechanisms]
Probab=95.06 E-value=0.0056 Score=60.37 Aligned_cols=49 Identities=29% Similarity=0.598 Sum_probs=39.9
Q ss_pred ccccceeccCCCccEEEEEeC-CCCEEEEEEccccCCcCHHHHHHHHHHhhc
Q 008872 497 FQLANKLGQGGFGPVYKGKLQ-DGQEIAVKRLSKASGQGQEEFMNEVMIHKD 547 (550)
Q Consensus 497 Fs~~~~LG~G~fG~VYKG~L~-~g~~VAVKrL~~~s~~~~~eF~~Ev~~i~~ 547 (550)
|+--.+||+|++|+|||++-. .|++||||++-. .....|...|+.+|.+
T Consensus 35 FDi~~KLGEGSYGSV~KAIH~EsG~v~AIK~VPV--~sDLQEIIKEISIMQQ 84 (502)
T KOG0574|consen 35 FDIVGKLGEGSYGSVHKAIHRESGHVLAIKKVPV--DTDLQEIIKEISIMQQ 84 (502)
T ss_pred HHHHHHhcCCcchHHHHHHHhccCcEEEEEecCc--cchHHHHHHHHHHHHH
Confidence 443478999999999999874 599999999843 3457899999999875
No 108
>PTZ00036 glycogen synthase kinase; Provisional
Probab=95.05 E-value=0.027 Score=60.61 Aligned_cols=52 Identities=25% Similarity=0.485 Sum_probs=39.4
Q ss_pred hccccccceeccCCCccEEEEEeC-CCCEEEEEEccccCCcCHHHHHHHHHHhhccc
Q 008872 494 TNNFQLANKLGQGGFGPVYKGKLQ-DGQEIAVKRLSKASGQGQEEFMNEVMIHKDKV 549 (550)
Q Consensus 494 T~~Fs~~~~LG~G~fG~VYKG~L~-~g~~VAVKrL~~~s~~~~~eF~~Ev~~i~~l~ 549 (550)
+..|...++||+|+||.||+|... .++.||||++... ......|+.+|.++.
T Consensus 65 ~~~y~~~~~LG~G~fg~Vy~~~~~~~~~~vAiK~i~~~----~~~~~~Ei~il~~l~ 117 (440)
T PTZ00036 65 NKSYKLGNIIGNGSFGVVYEAICIDTSEKVAIKKVLQD----PQYKNRELLIMKNLN 117 (440)
T ss_pred CCeEEEeEEEEeCCCEEEEEEEECCCCCEEEEEEEecC----cchHHHHHHHHHhcC
Confidence 445777789999999999999874 5789999998432 223456888887763
No 109
>cd06647 STKc_PAK_I Catalytic domain of the Protein Serine/Threonine Kinase, Group I p21-activated kinase. Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group I, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAKs from higher eukaryotes are classified into two groups (I and II), according to their bi
Probab=95.02 E-value=0.036 Score=55.79 Aligned_cols=52 Identities=29% Similarity=0.551 Sum_probs=40.8
Q ss_pred ccccceeccCCCccEEEEEe-CCCCEEEEEEccccCCcCHHHHHHHHHHhhcc
Q 008872 497 FQLANKLGQGGFGPVYKGKL-QDGQEIAVKRLSKASGQGQEEFMNEVMIHKDK 548 (550)
Q Consensus 497 Fs~~~~LG~G~fG~VYKG~L-~~g~~VAVKrL~~~s~~~~~eF~~Ev~~i~~l 548 (550)
|...+.||+|+||.||++.- .++..||+|.+........+.|.+|+.++.++
T Consensus 21 ~~~~~~lg~g~~g~v~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~e~~~l~~l 73 (293)
T cd06647 21 YTRFEKIGQGASGTVYTAIDVATGQEVAIKQMNLQQQPKKELIINEILVMREN 73 (293)
T ss_pred ceeeeEecCCCCeEEEEEEEcCCCCEEEEEEeccccchHHHHHHHHHHHHhhc
Confidence 44447899999999999975 46789999998644444467799999988775
No 110
>cd06635 STKc_TAO1 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 1. Serine/threonine kinases (STKs), thousand-and-one amino acids 1 (TAO1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO1 is sometimes referred to as prostate-derived sterile 20-like kinase 2 (PSK2). TAO1 activates the p38 MAPK through direct interaction with and activation of MEK3. TAO1 is highly expressed in the brain and may play a role in neuron
Probab=95.01 E-value=0.03 Score=57.08 Aligned_cols=53 Identities=25% Similarity=0.429 Sum_probs=40.9
Q ss_pred ccccceeccCCCccEEEEEeC-CCCEEEEEEccccCCc---CHHHHHHHHHHhhccc
Q 008872 497 FQLANKLGQGGFGPVYKGKLQ-DGQEIAVKRLSKASGQ---GQEEFMNEVMIHKDKV 549 (550)
Q Consensus 497 Fs~~~~LG~G~fG~VYKG~L~-~g~~VAVKrL~~~s~~---~~~eF~~Ev~~i~~l~ 549 (550)
|...++||+|+||.||++... ++..||||++...... ..++|.+|++++.++.
T Consensus 27 f~~~~~lg~G~~~~v~~~~~~~~~~~valK~~~~~~~~~~~~~~~~~~e~~~l~~l~ 83 (317)
T cd06635 27 FTDLREIGHGSFGAVYFARDVRTNEVVAIKKMSYSGKQSNEKWQDIIKEVKFLQRIK 83 (317)
T ss_pred hhhhheeccCCCeEEEEEEEcCCCcEEEEEEEecCCCCchHHHHHHHHHHHHHHhCC
Confidence 555589999999999999874 5789999998543222 2357999999988763
No 111
>cd05088 PTKc_Tie2 Catalytic domain of the Protein Tyrosine Kinase, Tie2. Protein Tyrosine Kinase (PTK) family; Tie2; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie2 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie2 is expressed mainly in endothelial cells and hematopoietic stem cells. It is also found in a subset of tumor-associated monocytes and eosinophils. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2. The binding of A
Probab=95.01 E-value=0.029 Score=56.77 Aligned_cols=52 Identities=27% Similarity=0.581 Sum_probs=38.9
Q ss_pred ccccceeccCCCccEEEEEeC-CCC--EEEEEEcccc-CCcCHHHHHHHHHHhhcc
Q 008872 497 FQLANKLGQGGFGPVYKGKLQ-DGQ--EIAVKRLSKA-SGQGQEEFMNEVMIHKDK 548 (550)
Q Consensus 497 Fs~~~~LG~G~fG~VYKG~L~-~g~--~VAVKrL~~~-s~~~~~eF~~Ev~~i~~l 548 (550)
|.-.++||+|+||.||++... ++. .+|+|++... .....++|..|+.++.++
T Consensus 9 ~~~~~~lg~G~~g~V~~a~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~Ei~~l~~l 64 (303)
T cd05088 9 IKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKL 64 (303)
T ss_pred ceeeeeecCCCCceEEEEEEccCCceeeEEEEEecccCCHHHHHHHHHHHHHHHHh
Confidence 444489999999999999874 454 4688887543 233456899999998876
No 112
>cd07845 STKc_CDK10 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 10. Serine/Threonine Kinases (STKs), Cyclin-dependent protein Kinase 10 (CDK10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK10, also called PISSLRE, is essential for cell growth and proliferation, and acts through the G2/M phase of the cell cycle. CDK10 has also been identified as an important factor in endocrine therapy resistance in breast cancer. CDK10 silencing
Probab=94.98 E-value=0.035 Score=56.24 Aligned_cols=55 Identities=20% Similarity=0.410 Sum_probs=41.1
Q ss_pred ccccccceeccCCCccEEEEEeC-CCCEEEEEEccccC--CcCHHHHHHHHHHhhccc
Q 008872 495 NNFQLANKLGQGGFGPVYKGKLQ-DGQEIAVKRLSKAS--GQGQEEFMNEVMIHKDKV 549 (550)
Q Consensus 495 ~~Fs~~~~LG~G~fG~VYKG~L~-~g~~VAVKrL~~~s--~~~~~eF~~Ev~~i~~l~ 549 (550)
++|...++||+|+||.||+|... +|+.||+|++.... ......+.+|+.++.++.
T Consensus 7 ~~y~~~~~ig~g~~~~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~ 64 (309)
T cd07845 7 TEFEKLNRIGEGTYGIVYRARDTTSGEIVALKKVRMDNERDGIPISSLREITLLLNLR 64 (309)
T ss_pred cceeEeeeeeecCCEEEEEEEECCCCcEEEEEEEEeccCCCCCcchhhHHHHHHHhCC
Confidence 34666689999999999999884 58999999985322 222345778998887764
No 113
>cd06654 STKc_PAK1 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 1. Serine/threonine kinases (STKs), p21-activated kinase (PAK) 1, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK1 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding
Probab=94.92 E-value=0.042 Score=55.42 Aligned_cols=52 Identities=27% Similarity=0.553 Sum_probs=41.2
Q ss_pred ccccceeccCCCccEEEEEe-CCCCEEEEEEccccCCcCHHHHHHHHHHhhcc
Q 008872 497 FQLANKLGQGGFGPVYKGKL-QDGQEIAVKRLSKASGQGQEEFMNEVMIHKDK 548 (550)
Q Consensus 497 Fs~~~~LG~G~fG~VYKG~L-~~g~~VAVKrL~~~s~~~~~eF~~Ev~~i~~l 548 (550)
|...++||+|+||.||+|.- .+++.||||.+........+.|..|+.++.++
T Consensus 22 y~~~~~lg~g~~~~v~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~e~~~l~~~ 74 (296)
T cd06654 22 YTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMREN 74 (296)
T ss_pred eeeEEEecCCCCeEEEEEEECCCCcEEEEEEEecCCcchHHHHHHHHHHHHhC
Confidence 33447899999999999985 46889999999655445567899999988765
No 114
>cd05051 PTKc_DDR Catalytic domain of the Protein Tyrosine Kinases, Discoidin Domain Receptors. Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR) subfamily; catalytic (c) domain. The DDR subfamily consists of homologs of mammalian DDR1, DDR2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR subfamily members are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linke
Probab=94.90 E-value=0.031 Score=55.99 Aligned_cols=53 Identities=30% Similarity=0.443 Sum_probs=39.6
Q ss_pred ccccceeccCCCccEEEEEeCC-----------------CCEEEEEEccccC-CcCHHHHHHHHHHhhccc
Q 008872 497 FQLANKLGQGGFGPVYKGKLQD-----------------GQEIAVKRLSKAS-GQGQEEFMNEVMIHKDKV 549 (550)
Q Consensus 497 Fs~~~~LG~G~fG~VYKG~L~~-----------------g~~VAVKrL~~~s-~~~~~eF~~Ev~~i~~l~ 549 (550)
|.-.++||+|+||.||++...+ +..||+|++.... ....++|.+|+.++.++.
T Consensus 7 ~~~~~~lg~G~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~e~~~l~~l~ 77 (296)
T cd05051 7 LNFVEKLGEGQFGEVHLCEADGLQDFSEKAFAENDNADAPVLVAVKVLRPDASDNAREDFLKEVKILSRLS 77 (296)
T ss_pred CcccccccCCCCccEEEEEeccCCcccccccccccccCCceeEEEEEecCccCHHHHHHHHHHHHHHHhcC
Confidence 3334799999999999988753 2468999985432 234678999999998864
No 115
>cd05622 STKc_ROCK1 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 1. Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK1 (or ROK-beta) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK1 is preferentially expressed in the liver, lung, spleen, testes, an
Probab=94.88 E-value=0.026 Score=59.22 Aligned_cols=62 Identities=23% Similarity=0.296 Sum_probs=46.1
Q ss_pred HHHHHHhhccccccceeccCCCccEEEEEeC-CCCEEEEEEcccc---CCcCHHHHHHHHHHhhcc
Q 008872 487 FEELANATNNFQLANKLGQGGFGPVYKGKLQ-DGQEIAVKRLSKA---SGQGQEEFMNEVMIHKDK 548 (550)
Q Consensus 487 ~~eL~~AT~~Fs~~~~LG~G~fG~VYKG~L~-~g~~VAVKrL~~~---s~~~~~eF~~Ev~~i~~l 548 (550)
+.++....++|...++||+|+||.||++... .++.+|+|.+... .....+.|.+|+.++..+
T Consensus 35 ~~~~~~~~~~y~i~~~lG~G~fg~Vy~~~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~e~~i~~~~ 100 (371)
T cd05622 35 IRDLRMKAEDYEVVKVIGRGAFGEVQLVRHKSTRKVYAMKLLSKFEMIKRSDSAFFWEERDIMAFA 100 (371)
T ss_pred HhhcCcchhhcEEEEEEeecCCeEEEEEEECCCCcEEEEEEEEHHHhhhhHHHHHHHHHHHHHHhC
Confidence 3445555677888899999999999999875 4789999998532 222345688898888765
No 116
>cd06643 STKc_SLK Catalytic domain of the Protein Serine/Threonine Kinase, Ste20-like kinase. Serine/threonine kinases (STKs), Ste20-like kinase (SLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It acts as a MAPK kinase kinase (MAPKKK) by phosphorylating ASK1, resulting in the phosphorylation of p38. SLK also plays a role in mediating actin reorganization. It is part of a microtubule-associated complex that is targeted at adhesion sites, and is required in focal adhesion turnover and in regulating cell migration.
Probab=94.88 E-value=0.03 Score=55.81 Aligned_cols=49 Identities=33% Similarity=0.500 Sum_probs=39.8
Q ss_pred ceeccCCCccEEEEEeCC-CCEEEEEEccccCCcCHHHHHHHHHHhhccc
Q 008872 501 NKLGQGGFGPVYKGKLQD-GQEIAVKRLSKASGQGQEEFMNEVMIHKDKV 549 (550)
Q Consensus 501 ~~LG~G~fG~VYKG~L~~-g~~VAVKrL~~~s~~~~~eF~~Ev~~i~~l~ 549 (550)
.+||+|+||.||+|.... +..+|+|++........++|.+|++++.++.
T Consensus 11 ~~lg~g~~g~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~l~ 60 (282)
T cd06643 11 GELGDGAFGKVYKAQNKETGVLAAAKVIDTKSEEELEDYMVEIDILASCD 60 (282)
T ss_pred hhcccCCCeEEEEEEECCCCeEEEEEEeCCCCHHHHHHHHHHHHHHHHCC
Confidence 689999999999998854 6788999986554445678999999988763
No 117
>PTZ00426 cAMP-dependent protein kinase catalytic subunit; Provisional
Probab=94.87 E-value=0.031 Score=57.90 Aligned_cols=53 Identities=25% Similarity=0.387 Sum_probs=40.0
Q ss_pred ccccceeccCCCccEEEEEeCC--CCEEEEEEcccc---CCcCHHHHHHHHHHhhccc
Q 008872 497 FQLANKLGQGGFGPVYKGKLQD--GQEIAVKRLSKA---SGQGQEEFMNEVMIHKDKV 549 (550)
Q Consensus 497 Fs~~~~LG~G~fG~VYKG~L~~--g~~VAVKrL~~~---s~~~~~eF~~Ev~~i~~l~ 549 (550)
|...++||+|+||.||+|...+ +..||||++... .....++|.+|+.++.++.
T Consensus 32 y~~~~~ig~G~~g~Vy~a~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~ 89 (340)
T PTZ00426 32 FNFIRTLGTGSFGRVILATYKNEDFPPVAIKRFEKSKIIKQKQVDHVFSERKILNYIN 89 (340)
T ss_pred cEEEEEEeecCCeEEEEEEEECCCCeEEEEEEEEHHHhhhhhhHHHHHHHHHHHHhCC
Confidence 5455899999999999998644 368999998532 2233567899999998764
No 118
>cd05054 PTKc_VEGFR Catalytic domain of the Protein Tyrosine Kinases, Vascular Endothelial Growth Factor Receptors. Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor (VEGFR) subfamily; catalytic (c) domain. The VEGFR subfamily consists of VEGFR1 (Flt1), VEGFR2 (Flk1), VEGFR3 (Flt4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to recepto
Probab=94.86 E-value=0.022 Score=58.78 Aligned_cols=52 Identities=27% Similarity=0.421 Sum_probs=37.7
Q ss_pred ccccceeccCCCccEEEEEeC------CCCEEEEEEccccCC-cCHHHHHHHHHHhhcc
Q 008872 497 FQLANKLGQGGFGPVYKGKLQ------DGQEIAVKRLSKASG-QGQEEFMNEVMIHKDK 548 (550)
Q Consensus 497 Fs~~~~LG~G~fG~VYKG~L~------~g~~VAVKrL~~~s~-~~~~eF~~Ev~~i~~l 548 (550)
|.-.++||+|+||.||+|... .++.||||++..... ...+.+..|+.++.++
T Consensus 9 ~~i~~~lG~G~fg~Vy~a~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~E~~~~~~l 67 (337)
T cd05054 9 LKLGKPLGRGAFGKVIQASAFGIEKSASCRTVAVKMLKEGATASEYKALMTELKILIHI 67 (337)
T ss_pred hhhhcccccCcCceEEeccccccccccccceeeeeeccCCCCHHHHHHHHHHHHHHHhh
Confidence 333489999999999999752 246899999964322 2235688899988776
No 119
>cd05053 PTKc_FGFR Catalytic domain of the Protein Tyrosine Kinases, Fibroblast Growth Factor Receptors. Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor (FGFR) subfamily; catalytic (c) domain. The FGFR subfamily consists of FGFR1, FGFR2, FGFR3, FGFR4, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K).PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, and to heparin/heparan sulfate (HS) results in the formation of a ternary complex, which leads to receptor dimerization and activation,
Probab=94.84 E-value=0.027 Score=56.39 Aligned_cols=54 Identities=26% Similarity=0.439 Sum_probs=39.9
Q ss_pred ccccccceeccCCCccEEEEEeCC------CCEEEEEEcccc-CCcCHHHHHHHHHHhhcc
Q 008872 495 NNFQLANKLGQGGFGPVYKGKLQD------GQEIAVKRLSKA-SGQGQEEFMNEVMIHKDK 548 (550)
Q Consensus 495 ~~Fs~~~~LG~G~fG~VYKG~L~~------g~~VAVKrL~~~-s~~~~~eF~~Ev~~i~~l 548 (550)
+.|...++||+|+||.||++...+ ...+|||++... ..+...+|.+|+.++.++
T Consensus 12 ~~~~~~~~ig~g~~g~v~~~~~~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~E~~~l~~l 72 (293)
T cd05053 12 DRLTLGKPLGEGAFGQVVKAEAVGLDNPNETSTVAVKMLKDDATEKDLSDLVSEMEMMKMI 72 (293)
T ss_pred hHeEEeeEecccccccEEEEEEecCCCCCCceeEEEEEccCCCCHHHHHHHHHHHHHHHhh
Confidence 345555899999999999998742 357999998642 223346799999988765
No 120
>cd05048 PTKc_Ror Catalytic Domain of the Protein Tyrosine Kinases, Receptor tyrosine kinase-like Orphan Receptors. Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor (Ror) subfamily; catalytic (c) domain. The Ror subfamily consists of Ror1, Ror2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimer
Probab=94.84 E-value=0.032 Score=55.50 Aligned_cols=50 Identities=36% Similarity=0.607 Sum_probs=37.9
Q ss_pred cceeccCCCccEEEEEeCCC------CEEEEEEccccC-CcCHHHHHHHHHHhhccc
Q 008872 500 ANKLGQGGFGPVYKGKLQDG------QEIAVKRLSKAS-GQGQEEFMNEVMIHKDKV 549 (550)
Q Consensus 500 ~~~LG~G~fG~VYKG~L~~g------~~VAVKrL~~~s-~~~~~eF~~Ev~~i~~l~ 549 (550)
.+.||+|+||.||+|..... ..||+|.+.... ....++|.+|+.++.++.
T Consensus 10 ~~~lg~G~~g~Vy~~~~~~~~~~~~~~~v~~K~~~~~~~~~~~~~~~~ei~~l~~l~ 66 (283)
T cd05048 10 LEELGEGAFGKVYKGELTGPNERLSATSVAIKTLKENAEPKVQQEFRQEAELMSDLQ 66 (283)
T ss_pred hhcccCccCCcEEEEEEecCCCCcceeeEEEEecccCCCHHHHHHHHHHHHHHHhcC
Confidence 37899999999999987432 479999985332 233467999999988753
No 121
>cd06645 STKc_MAP4K3 Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 3. Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated
Probab=94.82 E-value=0.029 Score=55.32 Aligned_cols=53 Identities=28% Similarity=0.547 Sum_probs=39.9
Q ss_pred ccccceeccCCCccEEEEEe-CCCCEEEEEEccccCCcCHHHHHHHHHHhhccc
Q 008872 497 FQLANKLGQGGFGPVYKGKL-QDGQEIAVKRLSKASGQGQEEFMNEVMIHKDKV 549 (550)
Q Consensus 497 Fs~~~~LG~G~fG~VYKG~L-~~g~~VAVKrL~~~s~~~~~eF~~Ev~~i~~l~ 549 (550)
|...++||+|+||.||++.. .+++.||+|.+........+.+.+|+.++.++.
T Consensus 11 ~~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~e~~~~~~l~ 64 (267)
T cd06645 11 FELIQRIGSGTYGDVYKARNVNTGELAAIKVIKLEPGEDFAVVQQEIIMMKDCK 64 (267)
T ss_pred HHHHHHhCCCCCeEEEEEEEcCCCcEEEEEEEecCchhHHHHHHHHHHHHHhCC
Confidence 33337899999999999986 458899999986443344456888998887653
No 122
>cd05055 PTKc_PDGFR Catalytic domain of the Protein Tyrosine Kinases, Platelet Derived Growth Factor Receptors. Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) subfamily; catalytic (c) domain. The PDGFR subfamily consists of PDGFR alpha, PDGFR beta, KIT, CSF-1R, the mammalian FLT3, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. PDGFR kinase domains are autoinhibited by their juxtamembrane regions containing tyr residues. The binding to their ligands leads to recept
Probab=94.80 E-value=0.031 Score=56.56 Aligned_cols=54 Identities=30% Similarity=0.476 Sum_probs=40.8
Q ss_pred ccccccceeccCCCccEEEEEe------CCCCEEEEEEccccC-CcCHHHHHHHHHHhhcc
Q 008872 495 NNFQLANKLGQGGFGPVYKGKL------QDGQEIAVKRLSKAS-GQGQEEFMNEVMIHKDK 548 (550)
Q Consensus 495 ~~Fs~~~~LG~G~fG~VYKG~L------~~g~~VAVKrL~~~s-~~~~~eF~~Ev~~i~~l 548 (550)
++|...++||+|+||.||++.. ..+..||||+++... ....+.|.+|+.++.++
T Consensus 35 ~~~~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l 95 (302)
T cd05055 35 NNLSFGKTLGAGAFGKVVEATAYGLSKSDAVMKVAVKMLKPTAHSSEREALMSELKIMSHL 95 (302)
T ss_pred HHeEEcceeeccCCeeEEEEEEecCCCCCceeEEEEEecCccCChHHHHHHHHHHHHHHhc
Confidence 4577779999999999999974 124579999986432 22345799999999887
No 123
>cd07876 STKc_JNK2 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 2. Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 2 (JNK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn
Probab=94.80 E-value=0.04 Score=57.29 Aligned_cols=55 Identities=24% Similarity=0.280 Sum_probs=42.3
Q ss_pred ccccccceeccCCCccEEEEEe-CCCCEEEEEEcccc--CCcCHHHHHHHHHHhhccc
Q 008872 495 NNFQLANKLGQGGFGPVYKGKL-QDGQEIAVKRLSKA--SGQGQEEFMNEVMIHKDKV 549 (550)
Q Consensus 495 ~~Fs~~~~LG~G~fG~VYKG~L-~~g~~VAVKrL~~~--s~~~~~eF~~Ev~~i~~l~ 549 (550)
+.|...++||+|+||.||++.- ..|..||||++... .....+++.+|+.++.++.
T Consensus 21 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~ 78 (359)
T cd07876 21 KRYQQLKPIGSGAQGIVCAAFDTVLGINVAVKKLSRPFQNQTHAKRAYRELVLLKCVN 78 (359)
T ss_pred hceEEEEEeecCCCEEEEEEEEcCCCceeEEEEecccccchhHHHHHHHHHHHHHhCC
Confidence 4466668999999999999976 45889999999542 2334567889999987653
No 124
>cd06607 STKc_TAO Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids proteins. Serine/threonine kinases (STKs), thousand-and-one amino acids (TAO) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. They activate the MAPKs, p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activating the respective MAP/ERK kinases (MEKs, also known as MKKs or MAPKKs), MEK3/MEK6 and MKK4/MKK7. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Vertebrates contain three TAO subfamily
Probab=94.78 E-value=0.05 Score=55.08 Aligned_cols=53 Identities=25% Similarity=0.433 Sum_probs=40.7
Q ss_pred ccccceeccCCCccEEEEEeC-CCCEEEEEEccccCCc---CHHHHHHHHHHhhccc
Q 008872 497 FQLANKLGQGGFGPVYKGKLQ-DGQEIAVKRLSKASGQ---GQEEFMNEVMIHKDKV 549 (550)
Q Consensus 497 Fs~~~~LG~G~fG~VYKG~L~-~g~~VAVKrL~~~s~~---~~~eF~~Ev~~i~~l~ 549 (550)
|...++||+|+||+||+|... +++.||+|++...... ..++|.+|++++.++.
T Consensus 17 y~~~~~lg~g~~g~vy~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~~~Ei~~l~~l~ 73 (307)
T cd06607 17 FTDLREIGHGSFGAVYFARDVRTNEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQQLR 73 (307)
T ss_pred hhhheeecCCCCeEEEEEEEcCCCcEEEEEEEeccccCcHHHHHHHHHHHHHHHhCC
Confidence 455578999999999999874 5889999998533222 2357999999988764
No 125
>cd05057 PTKc_EGFR_like Catalytic domain of Epidermal Growth Factor Receptor-like Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR) subfamily; catalytic (c) domain. EGFR (HER, ErbB) subfamily members include EGFR (HER1, ErbB1), HER2 (ErbB2), HER3 (ErbB3), HER4 (ErbB4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The EGFR proteins are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instea
Probab=94.74 E-value=0.035 Score=55.19 Aligned_cols=51 Identities=29% Similarity=0.528 Sum_probs=39.0
Q ss_pred ccceeccCCCccEEEEEeCC-CC----EEEEEEccccC-CcCHHHHHHHHHHhhccc
Q 008872 499 LANKLGQGGFGPVYKGKLQD-GQ----EIAVKRLSKAS-GQGQEEFMNEVMIHKDKV 549 (550)
Q Consensus 499 ~~~~LG~G~fG~VYKG~L~~-g~----~VAVKrL~~~s-~~~~~eF~~Ev~~i~~l~ 549 (550)
..++||+|+||.||+|+..+ |. .+|+|++.... ....++|.+|+.++.++.
T Consensus 11 ~~~~ig~g~~g~v~~~~~~~~~~~~~~~~aik~~~~~~~~~~~~~~~~e~~~l~~l~ 67 (279)
T cd05057 11 KIKVLGSGAFGTVYKGVWIPEGEKVKIPVAIKVLREETSPKANKEILDEAYVMASVD 67 (279)
T ss_pred EcceecCCCCccEEEEEEecCCCCcceEEEEEeccCCCCHHHHHHHHHHHHHHHhCC
Confidence 33799999999999998743 33 68999986443 234568999999998864
No 126
>cd05094 PTKc_TrkC Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase C. Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase C (TrkC); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkC is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkC to its ligand, neurotrophin 3 (NT3), results in receptor oligomerization and activation of the catalytic domain. TrkC is broadly expressed in the nervous system and in some n
Probab=94.74 E-value=0.033 Score=55.86 Aligned_cols=53 Identities=26% Similarity=0.432 Sum_probs=40.9
Q ss_pred ccccceeccCCCccEEEEEeC------CCCEEEEEEccccCCcCHHHHHHHHHHhhccc
Q 008872 497 FQLANKLGQGGFGPVYKGKLQ------DGQEIAVKRLSKASGQGQEEFMNEVMIHKDKV 549 (550)
Q Consensus 497 Fs~~~~LG~G~fG~VYKG~L~------~g~~VAVKrL~~~s~~~~~eF~~Ev~~i~~l~ 549 (550)
|.-.+.||+|+||.||+++.. ++..+|+|++........+.|.+|+.++.++.
T Consensus 7 ~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~l~ 65 (291)
T cd05094 7 IVLKRELGEGAFGKVFLAECYNLSPTKDKMLVAVKALKDPTLAARKDFQREAELLTNLQ 65 (291)
T ss_pred eEEeeeecccCCCeEEEeEeeccCCCCcceeeEEEecCCccHHHHHHHHHHHHHHhcCC
Confidence 334479999999999999752 34579999986554445678999999998864
No 127
>TIGR01982 UbiB 2-polyprenylphenol 6-hydroxylase. This model represents the enzyme (UbiB) which catalyzes the first hydroxylation step in the ubiquinone biosynthetic pathway in bacteria. It is believed that the reaction is 2-polyprenylphenol - 6-hydroxy-2-polyprenylphenol. This model finds hits primarily in the proteobacteria. The gene is also known as AarF in certain species.
Probab=94.73 E-value=0.041 Score=59.09 Aligned_cols=47 Identities=23% Similarity=0.396 Sum_probs=36.8
Q ss_pred ccccceeccCCCccEEEEEeCCCCEEEEEEccccCCcCHHHHHHHHHHhhc
Q 008872 497 FQLANKLGQGGFGPVYKGKLQDGQEIAVKRLSKASGQGQEEFMNEVMIHKD 547 (550)
Q Consensus 497 Fs~~~~LG~G~fG~VYKG~L~~g~~VAVKrL~~~s~~~~~eF~~Ev~~i~~ 547 (550)
|. .+-||.|++|.||+|++.+|+.||||.... .-.+.+..++.+|..
T Consensus 120 fd-~~plasaSigQVh~A~l~~G~~VaVKv~rp---~i~~~i~~Dl~~l~~ 166 (437)
T TIGR01982 120 FE-EKPLAAASIAQVHRARLVDGKEVAVKVLRP---GIEKTIAADIALLYR 166 (437)
T ss_pred CC-CcceeeeehhheEEEEecCCCEEEEEeeCC---CcHHHHHHHHHHHHH
Confidence 44 367999999999999999999999999842 335567777766553
No 128
>cd07873 STKc_PCTAIRE1 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-1 kinase. Serine/Threonine Kinases (STKs), PCTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-1 is expressed ubiquitously and is localized in the cytoplasm. Its kinase activity is cell cycle dependent and peaks at the S and G2 phases. PCTAIRE-1 is highly expressed in the brain and may pl
Probab=94.71 E-value=0.054 Score=54.62 Aligned_cols=53 Identities=26% Similarity=0.429 Sum_probs=40.3
Q ss_pred ccccceeccCCCccEEEEEeC-CCCEEEEEEcccc-CCcCHHHHHHHHHHhhccc
Q 008872 497 FQLANKLGQGGFGPVYKGKLQ-DGQEIAVKRLSKA-SGQGQEEFMNEVMIHKDKV 549 (550)
Q Consensus 497 Fs~~~~LG~G~fG~VYKG~L~-~g~~VAVKrL~~~-s~~~~~eF~~Ev~~i~~l~ 549 (550)
|....+||+|+||.||+|... +++.||+|.+... .......+.+|+.++.++.
T Consensus 8 y~~~~~lg~g~~g~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~ 62 (301)
T cd07873 8 YIKLDKLGEGTYATVYKGRSKLTDNLVALKEIRLEHEEGAPCTAIREVSLLKDLK 62 (301)
T ss_pred eEEeeEeccCcCEEEEEEEEcCCCcEEEEEEEecccccCchhHHHHHHHHHHhcC
Confidence 444478999999999999875 4789999998533 2333557889999988764
No 129
>KOG0198 consensus MEKK and related serine/threonine protein kinases [Signal transduction mechanisms]
Probab=94.67 E-value=0.042 Score=55.90 Aligned_cols=50 Identities=28% Similarity=0.429 Sum_probs=41.1
Q ss_pred cceeccCCCccEEEEEeCC-CCEEEEEEccccCCcCHHHHHHHHHHhhccc
Q 008872 500 ANKLGQGGFGPVYKGKLQD-GQEIAVKRLSKASGQGQEEFMNEVMIHKDKV 549 (550)
Q Consensus 500 ~~~LG~G~fG~VYKG~L~~-g~~VAVKrL~~~s~~~~~eF~~Ev~~i~~l~ 549 (550)
.+.||+|+||+||.+...+ |...|||..+..+....+....|++++.+|.
T Consensus 22 ~~~lG~Gs~G~V~l~~~~~~g~~~AvK~v~~~~~~~~~~l~~Ei~iL~~l~ 72 (313)
T KOG0198|consen 22 GKLLGRGSFGSVYLATNKKTGELMAVKSVELEDSPTSESLEREIRILSRLN 72 (313)
T ss_pred hccccCccceEEEEEEecCCCcceeeeeeecccchhHHHHHHHHHHHHhCC
Confidence 3899999999999999855 8999999986543333667999999999875
No 130
>cd06608 STKc_myosinIII_like Catalytic domain of Class III myosin-like Protein Serine/Threonine Kinases. Serine/threonine kinases (STKs), Class III myosin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins with an N-terminal kinase catalytic domain and a C-terminal actin-binding motor domain. Class III myosins are present in the photoreceptors of invertebrates and vertebrates and in the auditory hair cells of mammals. The kinase domain of myosin III can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, and can autophosphorylate the C-terminal motor domain. Myosin I
Probab=94.67 E-value=0.037 Score=54.45 Aligned_cols=56 Identities=30% Similarity=0.525 Sum_probs=44.6
Q ss_pred HhhccccccceeccCCCccEEEEEeC-CCCEEEEEEccccCCcCHHHHHHHHHHhhcc
Q 008872 492 NATNNFQLANKLGQGGFGPVYKGKLQ-DGQEIAVKRLSKASGQGQEEFMNEVMIHKDK 548 (550)
Q Consensus 492 ~AT~~Fs~~~~LG~G~fG~VYKG~L~-~g~~VAVKrL~~~s~~~~~eF~~Ev~~i~~l 548 (550)
.+++.|...+.||+|++|.||+|... +++.+|+|.+... ....++|.+|+.++.++
T Consensus 3 ~~~~~y~~~~~l~~g~~~~v~~~~~~~~~~~~~~k~~~~~-~~~~~~~~~e~~~l~~~ 59 (275)
T cd06608 3 DPTGIFELVEVIGEGTYGKVYKARHKKTGQLVAIKIMDII-EDEEEEIKEEYNILRKY 59 (275)
T ss_pred CchhheeheeeecCCCCeEEEEEEECCCCcEEEEEEEecC-chhHHHHHHHHHHHHHh
Confidence 35566777789999999999999985 5788999998643 33457899999998876
No 131
>cd06648 STKc_PAK_II Catalytic domain of the Protein Serine/Threonine Kinase, Group II p21-activated kinase. Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group II, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group II PAKs, also called non-conventional PAKs, include PAK4, PAK5, and PAK6. Group II PAKs contain PBD (p21-binding domain) and catalytic domains, but lack other motifs foun
Probab=94.66 E-value=0.047 Score=54.67 Aligned_cols=50 Identities=32% Similarity=0.448 Sum_probs=40.1
Q ss_pred cceeccCCCccEEEEEe-CCCCEEEEEEccccCCcCHHHHHHHHHHhhccc
Q 008872 500 ANKLGQGGFGPVYKGKL-QDGQEIAVKRLSKASGQGQEEFMNEVMIHKDKV 549 (550)
Q Consensus 500 ~~~LG~G~fG~VYKG~L-~~g~~VAVKrL~~~s~~~~~eF~~Ev~~i~~l~ 549 (550)
-++||+|++|.||++.. .+++.+|+|++........+.+.+|+.++.++.
T Consensus 24 ~~~lg~g~~g~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~e~~~l~~~~ 74 (285)
T cd06648 24 FVKIGEGSTGIVCIATDKSTGRQVAVKKMDLRKQQRRELLFNEVVIMRDYQ 74 (285)
T ss_pred ceEeccCCCeEEEEEEECCCCCEEEEEEEeccchhHHHHHHHHHHHHHHcC
Confidence 37999999999999986 468899999986544445667999998887653
No 132
>KOG0577 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=94.63 E-value=0.032 Score=59.95 Aligned_cols=53 Identities=25% Similarity=0.486 Sum_probs=41.4
Q ss_pred ccccceeccCCCccEEEEEe-CCCCEEEEEEccccCCcC---HHHHHHHHHHhhccc
Q 008872 497 FQLANKLGQGGFGPVYKGKL-QDGQEIAVKRLSKASGQG---QEEFMNEVMIHKDKV 549 (550)
Q Consensus 497 Fs~~~~LG~G~fG~VYKG~L-~~g~~VAVKrL~~~s~~~---~~eF~~Ev~~i~~l~ 549 (550)
|.+-..||.|+||.||-+.- .+.++||||++.-...|. ..+.+.||+.+.+|+
T Consensus 28 f~dLrEIGHGSFGAVYfArd~~n~evVAIKKMsySGKQs~EKWqDIlKEVrFL~~l~ 84 (948)
T KOG0577|consen 28 FSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDILKEVRFLRQLR 84 (948)
T ss_pred HHHHHHhcCCccceeEEeeccCccceeeeeeccccccccHHHHHHHHHHHHHHHhcc
Confidence 55557899999999998864 456799999997655554 357889999988775
No 133
>cd07865 STKc_CDK9 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 9. Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK9 together with a cyclin partner (cyclin T1, T2a, T2b, or K) is the main component of distinct positive transcription elongation factors (P-TEFb), which function as Ser2 C-terminal domain kinases of RNA polymerase II. P-TEFb participates in multipl
Probab=94.63 E-value=0.055 Score=54.45 Aligned_cols=54 Identities=24% Similarity=0.340 Sum_probs=40.6
Q ss_pred cccccceeccCCCccEEEEEeC-CCCEEEEEEcccc--CCcCHHHHHHHHHHhhccc
Q 008872 496 NFQLANKLGQGGFGPVYKGKLQ-DGQEIAVKRLSKA--SGQGQEEFMNEVMIHKDKV 549 (550)
Q Consensus 496 ~Fs~~~~LG~G~fG~VYKG~L~-~g~~VAVKrL~~~--s~~~~~eF~~Ev~~i~~l~ 549 (550)
+|....+||+|+||.||++... +++.||||++... .......+.+|+.++.++.
T Consensus 13 ~y~~~~~lg~g~~~~v~~~~~~~~~~~~aik~~~~~~~~~~~~~~~~~e~~~l~~l~ 69 (310)
T cd07865 13 KYEKLAKIGQGTFGEVFKARHKKTKQIVALKKVLMENEKEGFPITALREIKILQLLK 69 (310)
T ss_pred heEEEEEeecCCCEEEEEEEECCCCcEEEEEEEeccCCcCCchhHHHHHHHHHHhCC
Confidence 3555689999999999999874 5889999998432 2223445778999888764
No 134
>KOG0594 consensus Protein kinase PCTAIRE and related kinases [General function prediction only]
Probab=94.61 E-value=0.038 Score=55.88 Aligned_cols=48 Identities=27% Similarity=0.461 Sum_probs=34.7
Q ss_pred ceeccCCCccEEEEEe-CCCCEEEEEEccccCC--cCHHHHHHHHHHhhcc
Q 008872 501 NKLGQGGFGPVYKGKL-QDGQEIAVKRLSKASG--QGQEEFMNEVMIHKDK 548 (550)
Q Consensus 501 ~~LG~G~fG~VYKG~L-~~g~~VAVKrL~~~s~--~~~~eF~~Ev~~i~~l 548 (550)
++||+|.||+||||+- ..|+.||+|++..... .-...-..|+.++-+|
T Consensus 17 eklGeGtyg~Vykar~~~~g~~VALKkirl~~~~EG~P~taiREisllk~L 67 (323)
T KOG0594|consen 17 EKLGEGTYGVVYKARSKRTGKFVALKKIRLEFEEEGVPSTAIREISLLKRL 67 (323)
T ss_pred HHhCCCCceEEEEEEEecCCCEEEEEEEeccccccCCCchhhHHHHHHHHh
Confidence 5799999999999987 5689999999854322 1223346677776655
No 135
>cd05032 PTKc_InsR_like Catalytic domain of Insulin Receptor-like Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The InsR subfamily is composed of InsR, Insulin-like Growth Factor-1 Receptor (IGF-1R), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR and IGF-1R are receptor tyr kinases (RTKs) composed of two alphabeta heterodimers. Binding of the ligand (insulin, IGF-1, or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological
Probab=94.61 E-value=0.04 Score=54.57 Aligned_cols=53 Identities=32% Similarity=0.555 Sum_probs=39.8
Q ss_pred ccccceeccCCCccEEEEEeCC------CCEEEEEEccccC-CcCHHHHHHHHHHhhccc
Q 008872 497 FQLANKLGQGGFGPVYKGKLQD------GQEIAVKRLSKAS-GQGQEEFMNEVMIHKDKV 549 (550)
Q Consensus 497 Fs~~~~LG~G~fG~VYKG~L~~------g~~VAVKrL~~~s-~~~~~eF~~Ev~~i~~l~ 549 (550)
|...++||+|+||.||+|...+ +..||||.+.... .....+|.+|+.++.++.
T Consensus 8 ~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~~aik~~~~~~~~~~~~~~~~e~~~l~~~~ 67 (277)
T cd05032 8 ITLIRELGQGSFGMVYEGLAKGVVKGEPETRVAIKTVNENASMRERIEFLNEASVMKEFN 67 (277)
T ss_pred eeEEeEecCCCCceEEEEEEeccCCCCcceeEEEEecCCccCHHHHHHHHHHHHHHHhCC
Confidence 4445899999999999998743 3589999985432 233567999999987753
No 136
>cd07852 STKc_MAPK15 Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase 15. Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 15 (MAPK15) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK15 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. Human MAPK15 is also called Extracellular signal Regulated Kinase 8 (ERK8) while the rat protein is called ERK7. ERK7 and ERK8 display both similar and different biochemical properties. They autophosphorylate and activate themselves and do not require upstream activating kinases. ERK7 is constitutively active and is not affected by extracellular stimul
Probab=94.60 E-value=0.036 Score=56.98 Aligned_cols=53 Identities=23% Similarity=0.492 Sum_probs=40.6
Q ss_pred cccccceeccCCCccEEEEEeC-CCCEEEEEEcccc--CCcCHHHHHHHHHHhhcc
Q 008872 496 NFQLANKLGQGGFGPVYKGKLQ-DGQEIAVKRLSKA--SGQGQEEFMNEVMIHKDK 548 (550)
Q Consensus 496 ~Fs~~~~LG~G~fG~VYKG~L~-~g~~VAVKrL~~~--s~~~~~eF~~Ev~~i~~l 548 (550)
.|...++||+|+||.||+|... +++.+|||++... .....+.+..|+.++.++
T Consensus 8 ~y~~~~~lg~g~~~~v~~~~~~~~~~~~~vK~~~~~~~~~~~~~~~~~E~~~l~~l 63 (337)
T cd07852 8 KYEILQKLGKGAYGIVWKAIDRRTKEVVALKKIFDAFRNATDAQRTFREIMFLQEL 63 (337)
T ss_pred HHHHhHhhcCCCCeeEEEEEEcCCCeEEEEEeeccccCcchhhhhhhHHHHHHHHh
Confidence 3445588999999999999875 5789999998432 233445688899998876
No 137
>cd05111 PTK_HER3 Pseudokinase domain of the Protein Tyrosine Kinase, HER3. Protein Tyrosine Kinase (PTK) family; HER3 (ErbB3); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER3 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr r
Probab=94.59 E-value=0.049 Score=54.32 Aligned_cols=52 Identities=29% Similarity=0.448 Sum_probs=37.2
Q ss_pred cccceeccCCCccEEEEEe-CCCC----EEEEEEccccCC-cCHHHHHHHHHHhhccc
Q 008872 498 QLANKLGQGGFGPVYKGKL-QDGQ----EIAVKRLSKASG-QGQEEFMNEVMIHKDKV 549 (550)
Q Consensus 498 s~~~~LG~G~fG~VYKG~L-~~g~----~VAVKrL~~~s~-~~~~eF~~Ev~~i~~l~ 549 (550)
...+.||+|+||.||+|+. ++++ .+|+|++..... ...++|..|+.+++++.
T Consensus 10 ~~~~~lg~G~~~~vy~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~l~~l~ 67 (279)
T cd05111 10 RKLKLLGSGVFGTVHKGIWIPEGDSIKIPVAIKTIQDRSGRQTFQEITDHMLAMGSLD 67 (279)
T ss_pred eeccccCccCCcceEEEEEcCCCCceeeEEEEeecccccchHHHHHHHHHHHHHhcCC
Confidence 3347899999999999987 3454 478888854322 23467888888887753
No 138
>cd07843 STKc_CDC2L1 Catalytic domain of the Serine/Threonine Kinase, Cell Division Cycle 2-like 1. Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 1 (CDC2L1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L1, also called PITSLRE, exists in different isoforms which are named using the alias CDK11(p). The CDC2L1 gene produces two protein products, CDK11(p110) and CDK11(p58). CDC2L1 is also represented by the caspase-processed CDK11(p46). CDK11(p110), the
Probab=94.54 E-value=0.048 Score=54.61 Aligned_cols=53 Identities=21% Similarity=0.360 Sum_probs=40.0
Q ss_pred ccccceeccCCCccEEEEEeC-CCCEEEEEEccccC--CcCHHHHHHHHHHhhccc
Q 008872 497 FQLANKLGQGGFGPVYKGKLQ-DGQEIAVKRLSKAS--GQGQEEFMNEVMIHKDKV 549 (550)
Q Consensus 497 Fs~~~~LG~G~fG~VYKG~L~-~g~~VAVKrL~~~s--~~~~~eF~~Ev~~i~~l~ 549 (550)
|...+.||+|+||.||+|... +++.+|||+++... ......+.+|+.++.++.
T Consensus 7 y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~ 62 (293)
T cd07843 7 YEKLNRIEEGTYGVVYRARDKKTGEIVALKKLKMEKEKEGFPITSLREINILLKLQ 62 (293)
T ss_pred hhhhhhhcCCCCeEEEEEEECCCCcEEEEEEEeeccccccchhhHHHHHHHHHhcC
Confidence 444589999999999999986 48899999995332 222346788999888764
No 139
>cd05110 PTKc_HER4 Catalytic domain of the Protein Tyrosine Kinase, HER4. Protein Tyrosine Kinase (PTK) family; HER4 (ErbB4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER4 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as bindin
Probab=94.54 E-value=0.043 Score=55.51 Aligned_cols=53 Identities=34% Similarity=0.618 Sum_probs=38.4
Q ss_pred ccccceeccCCCccEEEEEeC-CCC----EEEEEEccccC-CcCHHHHHHHHHHhhccc
Q 008872 497 FQLANKLGQGGFGPVYKGKLQ-DGQ----EIAVKRLSKAS-GQGQEEFMNEVMIHKDKV 549 (550)
Q Consensus 497 Fs~~~~LG~G~fG~VYKG~L~-~g~----~VAVKrL~~~s-~~~~~eF~~Ev~~i~~l~ 549 (550)
|...++||+|+||.||+|... +|. .||+|.+.... .....+|.+|+.++.++.
T Consensus 9 ~~~~~~lg~G~~g~vy~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~~~~l~ 67 (303)
T cd05110 9 LKRVKVLGSGAFGTVYKGIWVPEGETVKIPVAIKILNETTGPKANVEFMDEALIMASMD 67 (303)
T ss_pred ceeccccccCCCccEEEEEEecCCCcceeeEEEEeccccCCHHHHHHHHHHHHHHHhCC
Confidence 444478999999999999863 444 47999885432 222457999999988753
No 140
>cd06658 STKc_PAK5 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 5. Serine/threonine kinases (STKs), p21-activated kinase (PAK) 5, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK5 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK5 is mainly express
Probab=94.54 E-value=0.04 Score=55.48 Aligned_cols=48 Identities=33% Similarity=0.506 Sum_probs=39.1
Q ss_pred ceeccCCCccEEEEEeC-CCCEEEEEEccccCCcCHHHHHHHHHHhhcc
Q 008872 501 NKLGQGGFGPVYKGKLQ-DGQEIAVKRLSKASGQGQEEFMNEVMIHKDK 548 (550)
Q Consensus 501 ~~LG~G~fG~VYKG~L~-~g~~VAVKrL~~~s~~~~~eF~~Ev~~i~~l 548 (550)
.+||+|+||.||++... ++..||||++........+.|.+|+.++.++
T Consensus 28 ~~lg~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l 76 (292)
T cd06658 28 IKIGEGSTGIVCIATEKHTGKQVAVKKMDLRKQQRRELLFNEVVIMRDY 76 (292)
T ss_pred hcccCCCCeEEEEEEECCCCCEEEEEEEecchHHHHHHHHHHHHHHHhC
Confidence 57999999999999874 5789999998654445566799999988765
No 141
>PLN03225 Serine/threonine-protein kinase SNT7; Provisional
Probab=94.46 E-value=0.046 Score=60.72 Aligned_cols=37 Identities=35% Similarity=0.694 Sum_probs=31.4
Q ss_pred hhccccccceeccCCCccEEEEEeCC-----CCEEEEEEccc
Q 008872 493 ATNNFQLANKLGQGGFGPVYKGKLQD-----GQEIAVKRLSK 529 (550)
Q Consensus 493 AT~~Fs~~~~LG~G~fG~VYKG~L~~-----g~~VAVKrL~~ 529 (550)
..++|...++||+|+||.||+|++.+ +..||||++..
T Consensus 130 ~~~~y~l~~~LG~G~FG~VYka~~~~~~~~~~~~vAvK~~~~ 171 (566)
T PLN03225 130 KKDDFVLGKKLGEGAFGVVYKASLVNKQSKKEGKYVLKKATE 171 (566)
T ss_pred ccCCeEEeEEEeeCCCeEEEEEEEcCCccccCcEEEEEEecc
Confidence 45678888999999999999999854 68999999853
No 142
>cd05097 PTKc_DDR_like Catalytic domain of Discoidin Domain Receptor-like Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR)-like proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR-like proteins are members of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linked to a variety of human cancers including
Probab=94.45 E-value=0.035 Score=55.79 Aligned_cols=50 Identities=30% Similarity=0.468 Sum_probs=37.1
Q ss_pred cceeccCCCccEEEEEeCC-------------C--CEEEEEEcccc-CCcCHHHHHHHHHHhhccc
Q 008872 500 ANKLGQGGFGPVYKGKLQD-------------G--QEIAVKRLSKA-SGQGQEEFMNEVMIHKDKV 549 (550)
Q Consensus 500 ~~~LG~G~fG~VYKG~L~~-------------g--~~VAVKrL~~~-s~~~~~eF~~Ev~~i~~l~ 549 (550)
.++||+|+||.||++...+ + ..||||++... .....+.|.+|++++.++.
T Consensus 10 ~~~lg~G~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~ei~~l~~l~ 75 (295)
T cd05097 10 KEKLGEGQFGEVHLCEAEGLAEFLGEGAPEFDGQPVLVAVKMLRADVTKTARNDFLKEIKIMSRLK 75 (295)
T ss_pred hhccCCCCCceEEecccccchhhccccCcccCCCceEEEEEecCCCCCHHHHHHHHHHHHHHHhCC
Confidence 3789999999999987642 2 25899998543 2223457999999998874
No 143
>cd07858 STKc_TEY_MAPK_plant Catalytic domain of the Serine/Threonine Kinases, TEY Mitogen-Activated Protein Kinases from Plants. Serine/Threonine Kinases (STKs), Plant TEY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TEY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. There are two subtypes of plant MAPKs based on the conserved phosphorylation motif present in the activati
Probab=94.44 E-value=0.057 Score=55.56 Aligned_cols=53 Identities=17% Similarity=0.419 Sum_probs=40.7
Q ss_pred cccccceeccCCCccEEEEEe-CCCCEEEEEEcccc--CCcCHHHHHHHHHHhhcc
Q 008872 496 NFQLANKLGQGGFGPVYKGKL-QDGQEIAVKRLSKA--SGQGQEEFMNEVMIHKDK 548 (550)
Q Consensus 496 ~Fs~~~~LG~G~fG~VYKG~L-~~g~~VAVKrL~~~--s~~~~~eF~~Ev~~i~~l 548 (550)
.|....+||+|+||+||++.- ..+..||||++... .....+++..|+.++.++
T Consensus 6 ~y~~~~~lg~G~~~~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l 61 (337)
T cd07858 6 KYVPIKPIGRGAYGIVCSAKNSETNEKVAIKKIANAFDNRIDAKRTLREIKLLRHL 61 (337)
T ss_pred ceeEEEEeccCCCeEEEEEEecCCCCeEEEEEecccccccchhHHHHHHHHHHHhc
Confidence 455568999999999999986 45889999998542 233456788899888765
No 144
>cd07866 STKc_BUR1 Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Bypass UAS Requirement 1 and similar proteins. Serine/Threonine Kinases (STKs), Bypass UAS Requirement 1 (BUR1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The BUR1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. BUR1, also called SGV1, is a yeast Cyclin-Dependent protein Kinase (CDK) that is functionally equivalent to mammalian CDK9. It associates with the cyclin BUR2. BUR genes were orginally identified in a genetic
Probab=94.42 E-value=0.061 Score=54.19 Aligned_cols=55 Identities=27% Similarity=0.469 Sum_probs=41.4
Q ss_pred ccccccceeccCCCccEEEEEeC-CCCEEEEEEccccC--CcCHHHHHHHHHHhhccc
Q 008872 495 NNFQLANKLGQGGFGPVYKGKLQ-DGQEIAVKRLSKAS--GQGQEEFMNEVMIHKDKV 549 (550)
Q Consensus 495 ~~Fs~~~~LG~G~fG~VYKG~L~-~g~~VAVKrL~~~s--~~~~~eF~~Ev~~i~~l~ 549 (550)
++|...++||+|+||.||+++.. +++.+|||++.... ......+.+|++++.++.
T Consensus 8 ~~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~ 65 (311)
T cd07866 8 RDYEILGKLGEGTFGEVYKARQIKTGRVVALKKILMHNEKDGFPITALREIKILKKLK 65 (311)
T ss_pred ccEEEEEEeccCCCEEEEEEEECCCCcEEEEEEEEeccCCCCcchhHHHHHHHHHhcC
Confidence 45666689999999999999874 58899999984322 223456788998887764
No 145
>cd06618 PKc_MKK7 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 7. Protein kinases (PKs), MAP kinase kinase 7 (MKK7) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK7 is a dual-specificity PK that phosphorylates and activates it
Probab=94.40 E-value=0.06 Score=54.10 Aligned_cols=50 Identities=20% Similarity=0.439 Sum_probs=38.3
Q ss_pred ccceeccCCCccEEEEEeCC-CCEEEEEEccccC-CcCHHHHHHHHHHhhcc
Q 008872 499 LANKLGQGGFGPVYKGKLQD-GQEIAVKRLSKAS-GQGQEEFMNEVMIHKDK 548 (550)
Q Consensus 499 ~~~~LG~G~fG~VYKG~L~~-g~~VAVKrL~~~s-~~~~~eF~~Ev~~i~~l 548 (550)
..++||+|+||.||+|...+ ++.||||++.... .....++..|+.++.++
T Consensus 19 ~~~~lg~g~~~~v~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~e~~~~~~~ 70 (296)
T cd06618 19 NLGEIGSGTCGQVYKMRFKKTGHVMAVKQMRRTGNKEENKRILMDLDVVLKS 70 (296)
T ss_pred eeeEeeccCCeEEEEEEECCCCeEEEEEEEeccCChHHHHHHHHHHHHHHhc
Confidence 34899999999999999865 8899999996432 23345678888777654
No 146
>KOG0032 consensus Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=94.38 E-value=0.048 Score=57.36 Aligned_cols=49 Identities=33% Similarity=0.516 Sum_probs=40.8
Q ss_pred ceeccCCCccEEEEEeCC-CCEEEEEEccccCCc---CHHHHHHHHHHhhccc
Q 008872 501 NKLGQGGFGPVYKGKLQD-GQEIAVKRLSKASGQ---GQEEFMNEVMIHKDKV 549 (550)
Q Consensus 501 ~~LG~G~fG~VYKG~L~~-g~~VAVKrL~~~s~~---~~~eF~~Ev~~i~~l~ 549 (550)
++||+|.||.||+++-+. |+.+|+|.+.+.... ..+...+|+.+|.+|.
T Consensus 41 ~~lG~G~Fg~v~~~~~~~tg~~~A~K~i~k~~~~~~~~~~~v~~Ev~il~~l~ 93 (382)
T KOG0032|consen 41 RELGRGQFGVVYLCREKSTGKEVACKVIPKRKLRGKEDREDVRREVAILQQLS 93 (382)
T ss_pred hhhCCCCceEEEEEEecCCCceeEEEEeehhhccccccHHHHHHHHHHHHhcc
Confidence 799999999999999876 999999999654332 3468999999998874
No 147
>KOG0580 consensus Serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]
Probab=94.38 E-value=0.022 Score=54.74 Aligned_cols=55 Identities=27% Similarity=0.433 Sum_probs=42.3
Q ss_pred ccccccceeccCCCccEEEEEeC-CCCEEEEEEcccc---CCcCHHHHHHHHHHhhccc
Q 008872 495 NNFQLANKLGQGGFGPVYKGKLQ-DGQEIAVKRLSKA---SGQGQEEFMNEVMIHKDKV 549 (550)
Q Consensus 495 ~~Fs~~~~LG~G~fG~VYKG~L~-~g~~VAVKrL~~~---s~~~~~eF~~Ev~~i~~l~ 549 (550)
++|.-.+.||+|.||.||.|.-. ++-.||+|.|.+. ..+-+.++..|+++-+.|+
T Consensus 22 ~dfeigr~LgkgkFG~vYlarekks~~IvalKVlfKsqi~~~~v~~qlrREiEIqs~L~ 80 (281)
T KOG0580|consen 22 DDFEIGRPLGKGKFGNVYLAREKKSLFIVALKVLFKSQILKTQVEHQLRREIEIQSHLR 80 (281)
T ss_pred hhccccccccCCccccEeEeeeccCCcEEEEeeeeHHHHHHhcchhhhhheeEeecccC
Confidence 34666689999999999999874 4679999999543 2344678999998877764
No 148
>cd07855 STKc_ERK5 Catalytic domain of the Serine/Threonine Kinase, Extracellular signal-Regulated Kinase 5. Serine/Threonine Kinases (STKs), Extracellular signal-Regulated Kinase 5 (ERK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ERK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. ERK5, also called Big MAPK1 (BMK1) or MAPK7, has a unique C-terminal extension, making it approximately twice as big as other MAPKs. This extension contains transcriptional activation capability which is inhibited by the N-terminal half. ERK5 is activated in response to growth factors and stress by a cascade that leads to its phosphorylation by the
Probab=94.38 E-value=0.068 Score=54.88 Aligned_cols=55 Identities=18% Similarity=0.367 Sum_probs=42.3
Q ss_pred ccccccceeccCCCccEEEEEeC-CCCEEEEEEcccc--CCcCHHHHHHHHHHhhccc
Q 008872 495 NNFQLANKLGQGGFGPVYKGKLQ-DGQEIAVKRLSKA--SGQGQEEFMNEVMIHKDKV 549 (550)
Q Consensus 495 ~~Fs~~~~LG~G~fG~VYKG~L~-~g~~VAVKrL~~~--s~~~~~eF~~Ev~~i~~l~ 549 (550)
.+|...++||+|++|.||++... +|..||||++... .....+.+.+|+.++.++.
T Consensus 5 ~~y~~~~~lg~g~~g~v~~~~~~~~~~~valK~~~~~~~~~~~~~~~~~e~~~l~~l~ 62 (334)
T cd07855 5 SRYKPIENIGSGAYGVVCSAIDTRSGKKVAIKKIPHAFDVPTLAKRTLRELKILRHFK 62 (334)
T ss_pred hceeeeeeeecCCCeEEEEEEEcCCCCEEEEEEeccccccccchHHHHHHHHHHHhcC
Confidence 45666689999999999999874 5899999999543 2234567888999887763
No 149
>cd05095 PTKc_DDR2 Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 2. Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 2 (DDR2) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR2 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR2 binds mostly to fibrillar collagens. More recently, it has been reported to also bind collagen X. DDR2 is widely expressed in many tissues wit
Probab=94.35 E-value=0.043 Score=55.22 Aligned_cols=53 Identities=26% Similarity=0.431 Sum_probs=38.6
Q ss_pred ccccceeccCCCccEEEEEeC-----------------CCCEEEEEEcccc-CCcCHHHHHHHHHHhhccc
Q 008872 497 FQLANKLGQGGFGPVYKGKLQ-----------------DGQEIAVKRLSKA-SGQGQEEFMNEVMIHKDKV 549 (550)
Q Consensus 497 Fs~~~~LG~G~fG~VYKG~L~-----------------~g~~VAVKrL~~~-s~~~~~eF~~Ev~~i~~l~ 549 (550)
|.-.++||+|+||.||++... +...||||++... .....++|..|+.+|.++.
T Consensus 7 ~~~~~~lg~G~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~E~~~l~~l~ 77 (296)
T cd05095 7 LTFKEKLGEGQFGEVHLCEAEGMEKFMDKDFSLDVSGNQPVLVAVKMLREDANKNARNDFLKEIKIMSRLK 77 (296)
T ss_pred ceeeeeccCCCCCeEEecccccccccccccccccCCCCceeEEEEEeccccCCHHHHHHHHHHHHHHHhCC
Confidence 444478999999999987532 2347999999643 2334568999999988763
No 150
>cd07875 STKc_JNK1 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 1. Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 1 (JNK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn
Probab=94.30 E-value=0.068 Score=55.66 Aligned_cols=55 Identities=20% Similarity=0.264 Sum_probs=41.6
Q ss_pred ccccccceeccCCCccEEEEEeC-CCCEEEEEEcccc--CCcCHHHHHHHHHHhhccc
Q 008872 495 NNFQLANKLGQGGFGPVYKGKLQ-DGQEIAVKRLSKA--SGQGQEEFMNEVMIHKDKV 549 (550)
Q Consensus 495 ~~Fs~~~~LG~G~fG~VYKG~L~-~g~~VAVKrL~~~--s~~~~~eF~~Ev~~i~~l~ 549 (550)
+.|...++||+|+||.||++.-. .++.||||++... .....+++.+|+.++.++.
T Consensus 24 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~ 81 (364)
T cd07875 24 KRYQNLKPIGSGAQGIVCAAYDAILERNVAIKKLSRPFQNQTHAKRAYRELVLMKCVN 81 (364)
T ss_pred cceeEEEEeecCCCeEEEEEEECCCCcEEEEEEeCccccCchhHHHHHHHHHHHHhcC
Confidence 45666689999999999999753 5789999999642 2233567889998887653
No 151
>smart00090 RIO RIO-like kinase.
Probab=94.29 E-value=0.055 Score=53.05 Aligned_cols=33 Identities=24% Similarity=0.242 Sum_probs=28.4
Q ss_pred ccccceeccCCCccEEEEE--eCCCCEEEEEEccc
Q 008872 497 FQLANKLGQGGFGPVYKGK--LQDGQEIAVKRLSK 529 (550)
Q Consensus 497 Fs~~~~LG~G~fG~VYKG~--L~~g~~VAVKrL~~ 529 (550)
+.-...||+|++|.||+|+ ..+|+.||||.+..
T Consensus 30 ~~i~~~Lg~G~~g~Vy~a~~~~~~g~~vaiK~~~~ 64 (237)
T smart00090 30 SAIGGCISTGKEANVYHALDFDGSGKERAVKIYRT 64 (237)
T ss_pred HHhCCeeccCcceeEEEEEecCCCCcEEEEEEEEc
Confidence 4455899999999999998 67899999998853
No 152
>KOG1989 consensus ARK protein kinase family [Signal transduction mechanisms]
Probab=94.25 E-value=0.044 Score=61.30 Aligned_cols=51 Identities=25% Similarity=0.367 Sum_probs=44.3
Q ss_pred ccceeccCCCccEEEEEeCCC-CEEEEEEccccCCcCHHHHHHHHHHhhccc
Q 008872 499 LANKLGQGGFGPVYKGKLQDG-QEIAVKRLSKASGQGQEEFMNEVMIHKDKV 549 (550)
Q Consensus 499 ~~~~LG~G~fG~VYKG~L~~g-~~VAVKrL~~~s~~~~~eF~~Ev~~i~~l~ 549 (550)
-+++|-||||+.||-+....+ ..+|+||+-...+++.+...+||.+|-+|.
T Consensus 41 V~~vLAEGGFa~VYla~~~~~~~~~AlKrm~~~de~~L~~v~~EI~~MK~L~ 92 (738)
T KOG1989|consen 41 VEKVLAEGGFAQVYLAQDVKGGKKYALKRMYVNDEEALNAVKREIDIMKLLS 92 (738)
T ss_pred EEEEEccCCcEEEEEEEecCCCceeeeeeeecCCHHHHHHHHHHHHHHHHhc
Confidence 348999999999999999776 999999996556778889999999998874
No 153
>PTZ00024 cyclin-dependent protein kinase; Provisional
Probab=94.15 E-value=0.067 Score=54.90 Aligned_cols=49 Identities=22% Similarity=0.322 Sum_probs=36.9
Q ss_pred ceeccCCCccEEEEEeC-CCCEEEEEEccccCCcC--------------HHHHHHHHHHhhccc
Q 008872 501 NKLGQGGFGPVYKGKLQ-DGQEIAVKRLSKASGQG--------------QEEFMNEVMIHKDKV 549 (550)
Q Consensus 501 ~~LG~G~fG~VYKG~L~-~g~~VAVKrL~~~s~~~--------------~~eF~~Ev~~i~~l~ 549 (550)
++||+|+||+||++... +++.||||++....... ...+.+|++++.++.
T Consensus 15 ~~ig~G~~g~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~ 78 (335)
T PTZ00024 15 AHLGEGTYGKVEKAYDTLTGKIVAIKKVKIIEISNDVTKDRQLVGMCGIHFTTLRELKIMNEIK 78 (335)
T ss_pred hcccCCCceeEEEEEECCCCCeEEEEEeeccccccccccchhhhcccccchhHHHHHHHHHhCC
Confidence 68999999999999864 58899999885322111 235788999888764
No 154
>PF03109 ABC1: ABC1 family; InterPro: IPR004147 This entry includes ABC1 from yeast [] and AarF from Escherichia coli []. These proteins have a nuclear or mitochondrial subcellular location in eukaryotes. The exact molecular functions of these proteins is not clear, however yeast ABC1 suppresses a cytochrome b mRNA translation defect and is essential for the electron transfer in the bc 1 complex [] and E. coli AarF is required for ubiquinone production []. It has been suggested that members of the ABC1 family are novel chaperonins []. These proteins are unrelated to the ABC transporter proteins.
Probab=94.12 E-value=0.022 Score=49.49 Aligned_cols=47 Identities=26% Similarity=0.407 Sum_probs=36.3
Q ss_pred ccccceeccCCCccEEEEEeCCCCEEEEEEccccCCcCHHHHHHHHHHhhc
Q 008872 497 FQLANKLGQGGFGPVYKGKLQDGQEIAVKRLSKASGQGQEEFMNEVMIHKD 547 (550)
Q Consensus 497 Fs~~~~LG~G~fG~VYKG~L~~g~~VAVKrL~~~s~~~~~eF~~Ev~~i~~ 547 (550)
|++ +-|+.|+.|.||+|+|.+|+.||||.... .-.+.+..++.+|..
T Consensus 14 fd~-~PlasASiaQVh~a~l~~g~~VaVKV~rP---~i~~~i~~Dl~~l~~ 60 (119)
T PF03109_consen 14 FDP-EPLASASIAQVHRARLKDGEEVAVKVQRP---GIEEQIEADLRILRR 60 (119)
T ss_pred CCc-chhhheehhhheeeeecccchhhhhhcch---HHHHHHHHHHHHHHH
Confidence 543 67999999999999999999999999742 334556666666644
No 155
>KOG0663 consensus Protein kinase PITSLRE and related kinases [General function prediction only]
Probab=94.05 E-value=0.049 Score=54.85 Aligned_cols=52 Identities=27% Similarity=0.464 Sum_probs=36.1
Q ss_pred ccccceeccCCCccEEEEEe-CCCCEEEEEEccccC-CcC-HHHHHHHHHHhhcc
Q 008872 497 FQLANKLGQGGFGPVYKGKL-QDGQEIAVKRLSKAS-GQG-QEEFMNEVMIHKDK 548 (550)
Q Consensus 497 Fs~~~~LG~G~fG~VYKG~L-~~g~~VAVKrL~~~s-~~~-~~eF~~Ev~~i~~l 548 (550)
|..-|.|++|.||.||+|.= ..+++||.||++-.. ..+ .---+.||.+|-+.
T Consensus 78 fe~lnrI~EGtyGiVYRakdk~t~eIVALKr~kmekek~GFPItsLREIniLl~~ 132 (419)
T KOG0663|consen 78 FEKLNRIEEGTYGVVYRAKDKKTDEIVALKRLKMEKEKEGFPITSLREINILLKA 132 (419)
T ss_pred HHHHhhcccCcceeEEEeccCCcceeEEeeecccccccCCCcchhHHHHHHHHhc
Confidence 33448999999999999975 346799999995321 111 12357888887654
No 156
>cd07850 STKc_JNK Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase. Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase (JNK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. They are also essential regulators of physiological and pathological processes and are involved in the pathogenesis of several diseases such as diabetes, atherosclerosis, stroke, Parkinson's and Alzheimer's. Vetebrates harbor three different JNK
Probab=94.03 E-value=0.078 Score=54.94 Aligned_cols=54 Identities=24% Similarity=0.333 Sum_probs=42.0
Q ss_pred ccccccceeccCCCccEEEEEe-CCCCEEEEEEcccc--CCcCHHHHHHHHHHhhcc
Q 008872 495 NNFQLANKLGQGGFGPVYKGKL-QDGQEIAVKRLSKA--SGQGQEEFMNEVMIHKDK 548 (550)
Q Consensus 495 ~~Fs~~~~LG~G~fG~VYKG~L-~~g~~VAVKrL~~~--s~~~~~eF~~Ev~~i~~l 548 (550)
+.|.....||+|+||.||++.- .+|+.||||++... .....+++..|+.++.++
T Consensus 16 ~~y~~~~~lg~g~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l 72 (353)
T cd07850 16 KRYQNLKPIGSGAQGIVCAAYDTVTGQNVAIKKLSRPFQNVTHAKRAYRELVLMKLV 72 (353)
T ss_pred cceEEEEEeccCCCEEEEEEEECCCCCEEEEEecCccccChhHHHHHHHHHHHHHhc
Confidence 4566668999999999999986 46889999998532 233446788899988875
No 157
>cd06633 STKc_TAO3 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 3. Serine/threonine kinases (STKs), thousand-and-one amino acids 3 (TAO3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO3 is also known as JIK (JNK inhibitory kinase) or KFC (kinase from chicken). It specifically activates c-Jun N-terminal kinase (JNK), presumably by phosphorylating and activating MKK4/MKK7. In Saccharomyces cerevisiae, TAO3 is a co
Probab=94.02 E-value=0.072 Score=54.19 Aligned_cols=50 Identities=26% Similarity=0.452 Sum_probs=38.6
Q ss_pred cceeccCCCccEEEEEeC-CCCEEEEEEccccCCc---CHHHHHHHHHHhhccc
Q 008872 500 ANKLGQGGFGPVYKGKLQ-DGQEIAVKRLSKASGQ---GQEEFMNEVMIHKDKV 549 (550)
Q Consensus 500 ~~~LG~G~fG~VYKG~L~-~g~~VAVKrL~~~s~~---~~~eF~~Ev~~i~~l~ 549 (550)
.++||+|+||+||+|... +++.||||++...... ..+++.+|+.++.++.
T Consensus 26 ~~~lg~g~~g~v~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~~~E~~~l~~l~ 79 (313)
T cd06633 26 LHEIGHGSFGAVYFATNSHTNEVVAVKKMSYSGKQTNEKWQDIIKEVKFLQQLK 79 (313)
T ss_pred ceeeccCCCeEEEEEEECCCCcEEEEEEEeccccCchHHHHHHHHHHHHHHhCC
Confidence 368999999999999874 5789999998543222 2356889999988764
No 158
>KOG4257 consensus Focal adhesion tyrosine kinase FAK, contains FERM domain [Signal transduction mechanisms]
Probab=93.95 E-value=0.058 Score=58.47 Aligned_cols=50 Identities=34% Similarity=0.605 Sum_probs=39.0
Q ss_pred cceeccCCCccEEEEEeCC---CC--EEEEEEccc-cCCcCHHHHHHHHHHhhccc
Q 008872 500 ANKLGQGGFGPVYKGKLQD---GQ--EIAVKRLSK-ASGQGQEEFMNEVMIHKDKV 549 (550)
Q Consensus 500 ~~~LG~G~fG~VYKG~L~~---g~--~VAVKrL~~-~s~~~~~eF~~Ev~~i~~l~ 549 (550)
..+||+|-||.||+|+..+ |. .||||..+. ......+.|+.|+.+|-+++
T Consensus 394 ~r~iG~GqFGdVy~gvYt~~~kge~iaVAvKtCK~d~t~d~tekflqEa~iMrnfd 449 (974)
T KOG4257|consen 394 KRLIGEGQFGDVYKGVYTDPEKGERIAVAVKTCKTDCTPDDTEKFLQEASIMRNFD 449 (974)
T ss_pred HHhhcCCcccceeeeEecccccCcceeeeeehhccCCChhhHHHHHHHHHHHHhCC
Confidence 4899999999999999843 32 589998865 33445678999999998754
No 159
>cd07851 STKc_p38 Catalytic domain of the Serine/Threonine Kinase, p38 Mitogen-Activated Protein Kinase. Serine/Threonine Kinases (STKs), p38 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They function in the regulation of the cell cycle, cell development, cell differentiation, senescence, tumorigenesis, apoptosis, pain development and pain progression, and immune responses. p38 kinases are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK
Probab=93.90 E-value=0.062 Score=55.52 Aligned_cols=56 Identities=23% Similarity=0.391 Sum_probs=42.5
Q ss_pred hccccccceeccCCCccEEEEEeC-CCCEEEEEEcccc--CCcCHHHHHHHHHHhhccc
Q 008872 494 TNNFQLANKLGQGGFGPVYKGKLQ-DGQEIAVKRLSKA--SGQGQEEFMNEVMIHKDKV 549 (550)
Q Consensus 494 T~~Fs~~~~LG~G~fG~VYKG~L~-~g~~VAVKrL~~~--s~~~~~eF~~Ev~~i~~l~ 549 (550)
.++|.....||+|++|.||+|... +++.||||++... +....+++..|+.++.++.
T Consensus 14 ~~~y~~~~~ig~g~~g~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~ 72 (343)
T cd07851 14 PDRYQNLSPVGSGAYGQVCSAFDTKTGRKVAIKKLSRPFQSAIHAKRTYRELRLLKHMD 72 (343)
T ss_pred cCceEEEEEeccCCceEEEEEEECCCCcEEEEEecccccchhhHHHHHHHHHHHHHhcc
Confidence 455666689999999999999885 5789999998542 2223466888998887763
No 160
>cd07874 STKc_JNK3 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 3. Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 3 (JNK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK3 is expressed primarily in the brain, and to a lesser extent in the heart and testis. Mice deficient in Jnk3 are protected against kainic acid-induced seizures, strok
Probab=93.84 E-value=0.086 Score=54.64 Aligned_cols=54 Identities=20% Similarity=0.288 Sum_probs=40.7
Q ss_pred ccccccceeccCCCccEEEEEeC-CCCEEEEEEcccc--CCcCHHHHHHHHHHhhcc
Q 008872 495 NNFQLANKLGQGGFGPVYKGKLQ-DGQEIAVKRLSKA--SGQGQEEFMNEVMIHKDK 548 (550)
Q Consensus 495 ~~Fs~~~~LG~G~fG~VYKG~L~-~g~~VAVKrL~~~--s~~~~~eF~~Ev~~i~~l 548 (550)
+.|...+.||+|+||.||++.-. .++.||||++... .....+.+.+|+.++.++
T Consensus 17 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l 73 (355)
T cd07874 17 KRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYRELVLMKCV 73 (355)
T ss_pred hceeEEEEeeecCCEEEEEEEecCCCceEEEEEeCCcccChHHHHHHHHHHHHHHHh
Confidence 45666689999999999999753 4789999999643 222346788899888765
No 161
>cd05101 PTKc_FGFR2 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 2. Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 2 (FGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR2 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to
Probab=93.82 E-value=0.072 Score=53.78 Aligned_cols=52 Identities=25% Similarity=0.429 Sum_probs=38.6
Q ss_pred ccccceeccCCCccEEEEEe--------CCCCEEEEEEcccc-CCcCHHHHHHHHHHhhcc
Q 008872 497 FQLANKLGQGGFGPVYKGKL--------QDGQEIAVKRLSKA-SGQGQEEFMNEVMIHKDK 548 (550)
Q Consensus 497 Fs~~~~LG~G~fG~VYKG~L--------~~g~~VAVKrL~~~-s~~~~~eF~~Ev~~i~~l 548 (550)
|.....||+|+||.||++.. .++..||+|.+... .....+++.+|+.++.++
T Consensus 17 ~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~E~~~l~~l 77 (304)
T cd05101 17 LTLGKPLGEGCFGQVVMAEALGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMI 77 (304)
T ss_pred eeecceeeccCCceEEEEEEeccCCCCCCcceeEEeeecccccchHHHHHHHHHHHHHHhh
Confidence 44458999999999999974 12457999998543 233456799999988765
No 162
>KOG0575 consensus Polo-like serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]
Probab=93.70 E-value=0.091 Score=56.74 Aligned_cols=53 Identities=30% Similarity=0.570 Sum_probs=41.7
Q ss_pred ccccceeccCCCccEEEEEe-CCCCEEEEEEcccc---CCcCHHHHHHHHHHhhccc
Q 008872 497 FQLANKLGQGGFGPVYKGKL-QDGQEIAVKRLSKA---SGQGQEEFMNEVMIHKDKV 549 (550)
Q Consensus 497 Fs~~~~LG~G~fG~VYKG~L-~~g~~VAVKrL~~~---s~~~~~eF~~Ev~~i~~l~ 549 (550)
+...+.||+|||..||+++- ..|++||||.+.+. .....+...+||++..+|.
T Consensus 20 Y~~g~~LGkGgFA~cYe~~~~~tge~~A~KvVpk~~l~k~~~reKv~~EIeIHr~L~ 76 (592)
T KOG0575|consen 20 YKRGRFLGKGGFARCYEARDLDTGEVVAVKVVPKKLLKKPKQREKVLNEIEIHRSLK 76 (592)
T ss_pred eeeeeeeccCcceEEEEEEEcCCCcEEEEEEeehHHhcCcchHHHHHHHHHHHHhcC
Confidence 44458999999999999987 77999999999653 2333566899999988763
No 163
>KOG4250 consensus TANK binding protein kinase TBK1 [Signal transduction mechanisms]
Probab=93.67 E-value=0.037 Score=60.71 Aligned_cols=49 Identities=37% Similarity=0.640 Sum_probs=39.6
Q ss_pred ceeccCCCccEEEEE-eCCCCEEEEEEccccC-CcCHHHHHHHHHHhhccc
Q 008872 501 NKLGQGGFGPVYKGK-LQDGQEIAVKRLSKAS-GQGQEEFMNEVMIHKDKV 549 (550)
Q Consensus 501 ~~LG~G~fG~VYKG~-L~~g~~VAVKrL~~~s-~~~~~eF~~Ev~~i~~l~ 549 (550)
..||+||||.||+|. -..|+.||||.....+ ....+.-..|+++|-||.
T Consensus 19 e~LG~Ga~g~V~rgrnketG~~vAvK~~~~~~~~r~~e~~~~EieilkKLn 69 (732)
T KOG4250|consen 19 ERLGKGAFGNVYRGRNKETGRLVAVKTFNKESSLRPRERWCREIEILKKLN 69 (732)
T ss_pred hhhcCCccceeeeecccccccchhHHhhhhhcccchHHHHHHHHHHHHHcC
Confidence 689999999999998 4569999999986543 333456888999998875
No 164
>KOG4278 consensus Protein tyrosine kinase [Signal transduction mechanisms]
Probab=93.67 E-value=0.046 Score=59.12 Aligned_cols=50 Identities=34% Similarity=0.597 Sum_probs=41.0
Q ss_pred cccceeccCCCccEEEEEeCC-CCEEEEEEccccCCcCHHHHHHHHHHhhcc
Q 008872 498 QLANKLGQGGFGPVYKGKLQD-GQEIAVKRLSKASGQGQEEFMNEVMIHKDK 548 (550)
Q Consensus 498 s~~~~LG~G~fG~VYKG~L~~-g~~VAVKrL~~~s~~~~~eF~~Ev~~i~~l 548 (550)
...++||-|-||.||.|++.. .-.||||.|+.. ....+||+.|+.+|-.|
T Consensus 270 tMkhKLGGGQYGeVYeGvWKkyslTvAVKtLKED-tMeveEFLkEAAvMKei 320 (1157)
T KOG4278|consen 270 TMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKED-TMEVEEFLKEAAVMKEI 320 (1157)
T ss_pred eeeeccCCCcccceeeeeeeccceeeehhhhhhc-chhHHHHHHHHHHHHhh
Confidence 344899999999999999954 468999999654 44578999999998764
No 165
>KOG0661 consensus MAPK related serine/threonine protein kinase [Signal transduction mechanisms]
Probab=93.52 E-value=0.039 Score=57.91 Aligned_cols=48 Identities=35% Similarity=0.513 Sum_probs=37.2
Q ss_pred ceeccCCCccEEEEEe-CCCCEEEEEEccccCCcCHHHH--HHHHHHhhccc
Q 008872 501 NKLGQGGFGPVYKGKL-QDGQEIAVKRLSKASGQGQEEF--MNEVMIHKDKV 549 (550)
Q Consensus 501 ~~LG~G~fG~VYKG~L-~~g~~VAVKrL~~~s~~~~~eF--~~Ev~~i~~l~ 549 (550)
++||.|.||.||+|+- ..|..||||++++. -...+|. ++||+.|-||.
T Consensus 16 ~klGDGTfGsV~la~~~~~~~~VAIK~MK~K-f~s~ee~~nLREvksL~kln 66 (538)
T KOG0661|consen 16 RKLGDGTFGSVYLAKSKETGELVAIKKMKKK-FYSWEECMNLREVKSLRKLN 66 (538)
T ss_pred HHhcCCcceeEEEeeecCCCceeeHHHHHhh-hccHHHHHHHHHHHHHHhcC
Confidence 6899999999999976 45889999999643 2335554 56888888764
No 166
>PHA03212 serine/threonine kinase US3; Provisional
Probab=93.51 E-value=0.092 Score=55.53 Aligned_cols=49 Identities=12% Similarity=0.136 Sum_probs=38.9
Q ss_pred ccccccceeccCCCccEEEEEe-CCCCEEEEEEccccCCcCHHHHHHHHHHhhccc
Q 008872 495 NNFQLANKLGQGGFGPVYKGKL-QDGQEIAVKRLSKASGQGQEEFMNEVMIHKDKV 549 (550)
Q Consensus 495 ~~Fs~~~~LG~G~fG~VYKG~L-~~g~~VAVKrL~~~s~~~~~eF~~Ev~~i~~l~ 549 (550)
+.|...++||+|+||.||++.- ..++.||||+.. .+.+.+|+.++.+|.
T Consensus 92 ~~y~~~~~lg~G~~g~V~~~~d~~~~~~vaiK~~~------~~~~~~E~~il~~l~ 141 (391)
T PHA03212 92 AGFSILETFTPGAEGFAFACIDNKTCEHVVIKAGQ------RGGTATEAHILRAIN 141 (391)
T ss_pred CCcEEEEEEcCCCCeEEEEEEECCCCCEEEEechh------hhhhHHHHHHHHhCC
Confidence 3466668999999999999976 357899999763 234789999998864
No 167
>cd05099 PTKc_FGFR4 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 4. Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 4 (FGFR4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR4 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to
Probab=93.48 E-value=0.09 Score=53.43 Aligned_cols=52 Identities=25% Similarity=0.410 Sum_probs=38.2
Q ss_pred ccccceeccCCCccEEEEEeC--------CCCEEEEEEcccc-CCcCHHHHHHHHHHhhcc
Q 008872 497 FQLANKLGQGGFGPVYKGKLQ--------DGQEIAVKRLSKA-SGQGQEEFMNEVMIHKDK 548 (550)
Q Consensus 497 Fs~~~~LG~G~fG~VYKG~L~--------~g~~VAVKrL~~~-s~~~~~eF~~Ev~~i~~l 548 (550)
|...++||+|+||.||++.-. ....+|+|++... .....++|.+|+.++.++
T Consensus 14 ~~~~~~lg~G~~g~vy~~~~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l 74 (314)
T cd05099 14 LVLGKPLGEGCFGQVVRAEAYGIDKSRPDQTVTVAVKMLKDNATDKDLADLISEMELMKLI 74 (314)
T ss_pred eeeeeeecCCCcccEEEeeecccCCccCCcceEEEEEecCCCCChHHHHHHHHHHHHHHhc
Confidence 444589999999999998642 2457999998643 223356799999988765
No 168
>cd06634 STKc_TAO2 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 2. Serine/threonine kinases (STKs), thousand-and-one amino acids 2 (TAO2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Human TAO2 is also known as prostate-derived Ste20-like kinase (PSK) and was identified in a screen for overexpressed RNAs in prostate cancer. TAO2 activates both p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activatin
Probab=93.36 E-value=0.082 Score=53.60 Aligned_cols=53 Identities=25% Similarity=0.460 Sum_probs=39.6
Q ss_pred ccccceeccCCCccEEEEEeC-CCCEEEEEEcccc---CCcCHHHHHHHHHHhhccc
Q 008872 497 FQLANKLGQGGFGPVYKGKLQ-DGQEIAVKRLSKA---SGQGQEEFMNEVMIHKDKV 549 (550)
Q Consensus 497 Fs~~~~LG~G~fG~VYKG~L~-~g~~VAVKrL~~~---s~~~~~eF~~Ev~~i~~l~ 549 (550)
|...++||+|+||.||+|... ++..+|||++... .....++|.+|++++.++.
T Consensus 17 ~~~~~~lg~g~~g~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~e~~~l~~l~ 73 (308)
T cd06634 17 FSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLR 73 (308)
T ss_pred HHHHHheeeCCCEEEEEEEEcCCCcEEEEEEEecccccChHHHHHHHHHHHHHHhCC
Confidence 444478999999999999874 5788999998532 1223457889999888763
No 169
>cd05098 PTKc_FGFR1 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 1. Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 1 (FGFR1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR1 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to
Probab=93.34 E-value=0.099 Score=52.88 Aligned_cols=52 Identities=25% Similarity=0.376 Sum_probs=38.3
Q ss_pred ccccceeccCCCccEEEEEeC--------CCCEEEEEEcccc-CCcCHHHHHHHHHHhhcc
Q 008872 497 FQLANKLGQGGFGPVYKGKLQ--------DGQEIAVKRLSKA-SGQGQEEFMNEVMIHKDK 548 (550)
Q Consensus 497 Fs~~~~LG~G~fG~VYKG~L~--------~g~~VAVKrL~~~-s~~~~~eF~~Ev~~i~~l 548 (550)
|.-.+.||+|+||.||++... ....+|+|.+... ......++..|+.++.++
T Consensus 20 ~~i~~~lg~G~~g~V~~~~~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~e~~~l~~l 80 (307)
T cd05098 20 LVLGKPLGEGCFGQVVMAEAIGLDKEKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMI 80 (307)
T ss_pred eEEeeeeccCCCeeEEEeEEeccCCcccCccceEEEEeccCCCChHHHHHHHHHHHHHHHh
Confidence 444589999999999998752 2357999999643 223346788999988765
No 170
>KOG0581 consensus Mitogen-activated protein kinase kinase (MAP2K) [Signal transduction mechanisms]
Probab=93.14 E-value=0.14 Score=52.17 Aligned_cols=58 Identities=24% Similarity=0.315 Sum_probs=44.6
Q ss_pred cccHHHHHHhhccccccceeccCCCccEEEEEe-CCCCEEEEEEcccc-CCcCHHHHHHHHHHhhcc
Q 008872 484 VFNFEELANATNNFQLANKLGQGGFGPVYKGKL-QDGQEIAVKRLSKA-SGQGQEEFMNEVMIHKDK 548 (550)
Q Consensus 484 ~fs~~eL~~AT~~Fs~~~~LG~G~fG~VYKG~L-~~g~~VAVKrL~~~-s~~~~~eF~~Ev~~i~~l 548 (550)
.++..||++- ++||+|..|+|||... +.++..|.|.+... ...-.++...|++++-+.
T Consensus 75 ~i~~~dle~~-------~~lG~G~gG~V~kv~Hk~t~~i~AlK~I~~~~~~~~~~Qi~rEl~il~~~ 134 (364)
T KOG0581|consen 75 GISLSDLERL-------GVLGSGNGGTVYKVRHKPTGKIYALKVILLNIDPALQKQILRELEILRSC 134 (364)
T ss_pred ccCHHHhhhh-------hhcccCCCcEEEEEEEcCCCeEEEEEeecccCCHHHHHHHHHHHHHHhhC
Confidence 3667787765 7999999999999988 56788999998322 233357889999988653
No 171
>KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=93.04 E-value=0.16 Score=55.71 Aligned_cols=52 Identities=33% Similarity=0.507 Sum_probs=40.5
Q ss_pred ccccccceeccCCCccEEEEEeC-CCCEEEEEEcccc---CCcCHHHHHHHHHHhh
Q 008872 495 NNFQLANKLGQGGFGPVYKGKLQ-DGQEIAVKRLSKA---SGQGQEEFMNEVMIHK 546 (550)
Q Consensus 495 ~~Fs~~~~LG~G~fG~VYKG~L~-~g~~VAVKrL~~~---s~~~~~eF~~Ev~~i~ 546 (550)
++|.-..+||+|+||.|+.+.+. .++..|||.|++. .....+.-+.|.+|+.
T Consensus 368 ~~F~~l~vLGkGsFGkV~lae~k~~~e~yAIK~LKK~~Il~~d~Ve~~~~EkrI~~ 423 (694)
T KOG0694|consen 368 DDFRLLAVLGRGSFGKVLLAELKGTNEYYAIKVLKKGDILQRDEVESLMCEKRIFE 423 (694)
T ss_pred cceEEEEEeccCcCceEEEEEEcCCCcEEEEEEeeccceeccccHHHHHHHHHHHH
Confidence 45777789999999999999995 4778999999654 3344566788877764
No 172
>PHA03211 serine/threonine kinase US3; Provisional
Probab=93.03 E-value=0.12 Score=55.90 Aligned_cols=49 Identities=20% Similarity=0.219 Sum_probs=38.7
Q ss_pred ccccccceeccCCCccEEEEEeCC-CCEEEEEEccccCCcCHHHHHHHHHHhhccc
Q 008872 495 NNFQLANKLGQGGFGPVYKGKLQD-GQEIAVKRLSKASGQGQEEFMNEVMIHKDKV 549 (550)
Q Consensus 495 ~~Fs~~~~LG~G~fG~VYKG~L~~-g~~VAVKrL~~~s~~~~~eF~~Ev~~i~~l~ 549 (550)
.+|....+||+|+||.||++..++ ++.||||+.. ...+.+|+.+|.+|.
T Consensus 169 ~gy~i~~~Lg~G~~G~Vy~a~~~~~~~~vavK~~~------~~~~~~E~~iL~~L~ 218 (461)
T PHA03211 169 LGFAIHRALTPGSEGCVFESSHPDYPQRVVVKAGW------YASSVHEARLLRRLS 218 (461)
T ss_pred CCeEEEEEEccCCCeEEEEEEECCCCCEEEEeccc------ccCHHHHHHHHHHCC
Confidence 356666899999999999999865 7889999643 234778999998864
No 173
>KOG0605 consensus NDR and related serine/threonine kinases [General function prediction only]
Probab=92.62 E-value=0.12 Score=55.22 Aligned_cols=54 Identities=30% Similarity=0.417 Sum_probs=40.2
Q ss_pred hccccccceeccCCCccEEEEEeCC-CCEEEEEEccccCCcC---HHHHHHHHHHhhc
Q 008872 494 TNNFQLANKLGQGGFGPVYKGKLQD-GQEIAVKRLSKASGQG---QEEFMNEVMIHKD 547 (550)
Q Consensus 494 T~~Fs~~~~LG~G~fG~VYKG~L~~-g~~VAVKrL~~~s~~~---~~eF~~Ev~~i~~ 547 (550)
.+.|..-.+||+|+||.||-+.-.+ |..+|+|+|.+..... .+-.++|=.+|+.
T Consensus 140 ~~DFe~Lk~IgkGAfGeVrLarKk~Tg~iyAmK~LkKS~M~~~~Qv~hV~aERdiL~~ 197 (550)
T KOG0605|consen 140 LDDFELLKVIGKGAFGEVRLARKKDTGEIYAMKILKKSEMLKKNQVEHVRAERDILAE 197 (550)
T ss_pred cccchhheeeccccceeEEEEEEccCCcEEeeecccHHHHHhhhhHHHHHHHHHHhhh
Confidence 3556666899999999999987755 8899999997654332 3446777777664
No 174
>PHA03209 serine/threonine kinase US3; Provisional
Probab=92.28 E-value=0.2 Score=52.18 Aligned_cols=51 Identities=18% Similarity=0.234 Sum_probs=38.0
Q ss_pred hhccccccceeccCCCccEEEEEeCC-CCEEEEEEccccCCcCHHHHHHHHHHhhccc
Q 008872 493 ATNNFQLANKLGQGGFGPVYKGKLQD-GQEIAVKRLSKASGQGQEEFMNEVMIHKDKV 549 (550)
Q Consensus 493 AT~~Fs~~~~LG~G~fG~VYKG~L~~-g~~VAVKrL~~~s~~~~~eF~~Ev~~i~~l~ 549 (550)
...+|...++||+|+||.||+|...+ +..||+|..... .+..|+.++.++.
T Consensus 64 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~valK~~~~~------~~~~E~~~l~~l~ 115 (357)
T PHA03209 64 ASLGYTVIKTLTPGSEGRVFVATKPGQPDPVVLKIGQKG------TTLIEAMLLQNVN 115 (357)
T ss_pred hhcCcEEEEEecCCCCeEEEEEEECCCCceEEEEeCCcc------ccHHHHHHHHhCC
Confidence 34568888999999999999998854 678999975322 2356787777653
No 175
>PRK09605 bifunctional UGMP family protein/serine/threonine protein kinase; Validated
Probab=92.25 E-value=0.14 Score=56.64 Aligned_cols=56 Identities=14% Similarity=0.159 Sum_probs=36.2
Q ss_pred hccccccceeccCCCccEEEEEeCCCCEEEEEEccccCC-------cCHHHHHHHHHHhhccc
Q 008872 494 TNNFQLANKLGQGGFGPVYKGKLQDGQEIAVKRLSKASG-------QGQEEFMNEVMIHKDKV 549 (550)
Q Consensus 494 T~~Fs~~~~LG~G~fG~VYKG~L~~g~~VAVKrL~~~s~-------~~~~eF~~Ev~~i~~l~ 549 (550)
...+...++||+|+||.||+|.+.+...++.+++.+... ...+.|..|++++.++.
T Consensus 332 ~~~~~~~~~iG~G~~g~Vy~~~~~~~~~v~k~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~ 394 (535)
T PRK09605 332 KRRKIPDHLIGKGAEADIKKGEYLGRDAVIKERVPKGYRHPELDERLRTERTRAEARLLSEAR 394 (535)
T ss_pred ccccCccceeccCCcEEEEEEeecCccceeEEEecccccchhHHHHHHHHHHHHHHHHHHhhc
Confidence 334455689999999999999986654433333322111 11356899999988763
No 176
>KOG0667 consensus Dual-specificity tyrosine-phosphorylation regulated kinase [General function prediction only]
Probab=92.01 E-value=0.19 Score=54.75 Aligned_cols=48 Identities=25% Similarity=0.284 Sum_probs=37.0
Q ss_pred ceeccCCCccEEEEEeC-CCCEEEEEEccccCCcCHHHHHHHHHHhhccc
Q 008872 501 NKLGQGGFGPVYKGKLQ-DGQEIAVKRLSKASGQGQEEFMNEVMIHKDKV 549 (550)
Q Consensus 501 ~~LG~G~fG~VYKG~L~-~g~~VAVKrL~~~s~~~~~eF~~Ev~~i~~l~ 549 (550)
++||+|.||.|-|+.=. .++.||||.+++. ..-.++=..||++|.+|+
T Consensus 192 e~LGkGtFGQVvk~~d~~T~e~VAIKIiKN~-k~f~~Q~~~Ei~iL~~ln 240 (586)
T KOG0667|consen 192 EVLGKGSFGQVVKAYDHKTGEIVAIKIIKNK-KRFLRQAQIEIRILELLN 240 (586)
T ss_pred EEecccccceeEEEEecCCCcEEEEEeeccC-hHHHHHHHHHHHHHHHHh
Confidence 79999999999999653 4889999999643 222345577888888775
No 177
>PTZ00266 NIMA-related protein kinase; Provisional
Probab=91.86 E-value=0.14 Score=59.72 Aligned_cols=55 Identities=22% Similarity=0.390 Sum_probs=41.3
Q ss_pred ccccccceeccCCCccEEEEEeC-CCCEEEEEEcccc--CCcCHHHHHHHHHHhhccc
Q 008872 495 NNFQLANKLGQGGFGPVYKGKLQ-DGQEIAVKRLSKA--SGQGQEEFMNEVMIHKDKV 549 (550)
Q Consensus 495 ~~Fs~~~~LG~G~fG~VYKG~L~-~g~~VAVKrL~~~--s~~~~~eF~~Ev~~i~~l~ 549 (550)
+.|....+||+|+||+||++... .+..||+|.+... .......|..|+.++.+|.
T Consensus 13 ~~YeIl~kLG~GgFGtVYLAkdk~tg~~vAlKvIk~~~l~e~~~~~~~~EI~IL~~L~ 70 (1021)
T PTZ00266 13 NEYEVIKKIGNGRFGEVFLVKHKRTQEFFCWKAISYRGLKEREKSQLVIEVNVMRELK 70 (1021)
T ss_pred CCEEEEEEEecCCCeEEEEEEECCCCeEEEEEEEeccccCHHHHHHHHHHHHHHHHcC
Confidence 34555589999999999999874 4678999988532 2223467999999998864
No 178
>PRK04750 ubiB putative ubiquinone biosynthesis protein UbiB; Reviewed
Probab=91.72 E-value=0.27 Score=54.01 Aligned_cols=32 Identities=31% Similarity=0.569 Sum_probs=28.6
Q ss_pred cccccceeccCCCccEEEEEeCC-CCEEEEEEcc
Q 008872 496 NFQLANKLGQGGFGPVYKGKLQD-GQEIAVKRLS 528 (550)
Q Consensus 496 ~Fs~~~~LG~G~fG~VYKG~L~~-g~~VAVKrL~ 528 (550)
.|++ +-||+|++|.||++++.+ |+.||||.+.
T Consensus 121 ~fd~-~PlasaSiaQVh~A~l~~~G~~VAVKV~r 153 (537)
T PRK04750 121 DFDI-KPLASASIAQVHFARLKDNGREVVVKVLR 153 (537)
T ss_pred hcCh-hhhcCCCccEEEEEEECCCCCEEEEEEeC
Confidence 4665 679999999999999988 9999999985
No 179
>cd05100 PTKc_FGFR3 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 3. Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 3 (FGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR3 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to
Probab=91.40 E-value=0.25 Score=50.63 Aligned_cols=49 Identities=24% Similarity=0.369 Sum_probs=36.4
Q ss_pred cceeccCCCccEEEEEeC--------CCCEEEEEEcccc-CCcCHHHHHHHHHHhhcc
Q 008872 500 ANKLGQGGFGPVYKGKLQ--------DGQEIAVKRLSKA-SGQGQEEFMNEVMIHKDK 548 (550)
Q Consensus 500 ~~~LG~G~fG~VYKG~L~--------~g~~VAVKrL~~~-s~~~~~eF~~Ev~~i~~l 548 (550)
.++||+|+||.||++.-. .+..||+|.+... .....++|..|+.++.++
T Consensus 17 ~~~ig~G~~g~v~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l 74 (334)
T cd05100 17 GKPLGEGCFGQVVMAEAIGIDKDKPNKPVTVAVKMLKDDATDKDLSDLVSEMEMMKMI 74 (334)
T ss_pred cceeccccCCcEEEEEEeccCCccCCcceeEEEEEcccccCHHHHHHHHHHHHHHHhh
Confidence 379999999999998642 1236899988642 223356899999998876
No 180
>KOG1167 consensus Serine/threonine protein kinase of the CDC7 subfamily involved in DNA synthesis, repair and recombination [Replication, recombination and repair]
Probab=91.33 E-value=0.12 Score=53.48 Aligned_cols=53 Identities=25% Similarity=0.493 Sum_probs=41.1
Q ss_pred hccccccceeccCCCccEEEEEeCC----CCEEEEEEccccCCcCHHHHHHHHHHhhcc
Q 008872 494 TNNFQLANKLGQGGFGPVYKGKLQD----GQEIAVKRLSKASGQGQEEFMNEVMIHKDK 548 (550)
Q Consensus 494 T~~Fs~~~~LG~G~fG~VYKG~L~~----g~~VAVKrL~~~s~~~~~eF~~Ev~~i~~l 548 (550)
.+.|...++||+|.|++|||+++.. ...||+|.+... .......+|++.|.++
T Consensus 35 ~~~~~~v~kigeGsFssv~~a~~~~~~~~~~~valk~i~~t--s~p~ri~~El~~L~~~ 91 (418)
T KOG1167|consen 35 SNAYKVVNKIGEGSFSSVYKATDIEQDTKRRYVALKAIYRT--SSPSRILNELEMLYRL 91 (418)
T ss_pred hhhhhhhccccccchhhhhhhhHhhhccccceEeeeecccc--cCchHHHHHHHHHHHh
Confidence 3557777999999999999999854 468999999643 3455578888877764
No 181
>KOG0598 consensus Ribosomal protein S6 kinase and related proteins [General function prediction only; Signal transduction mechanisms]
Probab=90.90 E-value=0.21 Score=50.91 Aligned_cols=54 Identities=26% Similarity=0.434 Sum_probs=40.8
Q ss_pred ccccccceeccCCCccEEEEEeCC-CCEEEEEEccccC---CcCHHHHHHHHHHhhcc
Q 008872 495 NNFQLANKLGQGGFGPVYKGKLQD-GQEIAVKRLSKAS---GQGQEEFMNEVMIHKDK 548 (550)
Q Consensus 495 ~~Fs~~~~LG~G~fG~VYKG~L~~-g~~VAVKrL~~~s---~~~~~eF~~Ev~~i~~l 548 (550)
+.|..-++||+|+||.||...-.+ ++..|.|.|++.. ....+.-.+|..++.++
T Consensus 25 ~dF~~lkviGkG~fGkV~~Vrk~dt~kiYAmKvl~K~~iv~~~e~~~~~~Er~IL~~v 82 (357)
T KOG0598|consen 25 DDFEILKVIGKGSFGKVFQVRKKDTGKIYAMKVLKKKKIVEKKEVRHTKAERNILSKI 82 (357)
T ss_pred hheeeeeeeeccCCceEEEEEEcccCceeehhhhhhhHhhhhhhHHHHHHHHHHHHhC
Confidence 346666999999999999886644 7899999996532 22345678899888875
No 182
>PTZ00267 NIMA-related protein kinase; Provisional
Probab=90.79 E-value=0.29 Score=53.28 Aligned_cols=53 Identities=9% Similarity=0.065 Sum_probs=39.2
Q ss_pred ccccceeccCCCccEEEEEeC-C-CCEEEEEEccccCCcCHHHHHHHHHHhhccc
Q 008872 497 FQLANKLGQGGFGPVYKGKLQ-D-GQEIAVKRLSKASGQGQEEFMNEVMIHKDKV 549 (550)
Q Consensus 497 Fs~~~~LG~G~fG~VYKG~L~-~-g~~VAVKrL~~~s~~~~~eF~~Ev~~i~~l~ 549 (550)
|...++||+|+||.||++.-. + ++.||+|++..........+..|+.+++++.
T Consensus 69 y~~~~~lg~G~~g~vy~a~~~~~~~~~vv~K~~~~~~~~~~~~~~~E~~~l~~l~ 123 (478)
T PTZ00267 69 YVLTTLVGRNPTTAAFVATRGSDPKEKVVAKFVMLNDERQAAYARSELHCLAACD 123 (478)
T ss_pred EEEEEEEEeCCCcEEEEEEEcCCCCeEEEEEEcccCCHHHHHHHHHHHHHHHhCC
Confidence 344489999999999999753 3 5678888875443344567889999998764
No 183
>PHA02882 putative serine/threonine kinase; Provisional
Probab=90.67 E-value=0.32 Score=48.94 Aligned_cols=31 Identities=26% Similarity=0.522 Sum_probs=22.9
Q ss_pred ccccceeccCCCccEEEEEeCCC----CEEEEEEc
Q 008872 497 FQLANKLGQGGFGPVYKGKLQDG----QEIAVKRL 527 (550)
Q Consensus 497 Fs~~~~LG~G~fG~VYKG~L~~g----~~VAVKrL 527 (550)
|.-.++||+|+||.||+|...+. ..+|+|..
T Consensus 14 y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~~k~~ 48 (294)
T PHA02882 14 WKIDKLIGCGGFGCVYETQCASDHCINNQAVAKIE 48 (294)
T ss_pred eEEeeEEecCCCceEEEEEEcCCcccccceEEEec
Confidence 44458999999999999998654 34555543
No 184
>KOG0582 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]
Probab=90.37 E-value=0.36 Score=50.60 Aligned_cols=48 Identities=17% Similarity=0.220 Sum_probs=39.1
Q ss_pred ceeccCCCccEEEEEe-CCCCEEEEEEccccCCcC-HHHHHHHHHHhhcc
Q 008872 501 NKLGQGGFGPVYKGKL-QDGQEIAVKRLSKASGQG-QEEFMNEVMIHKDK 548 (550)
Q Consensus 501 ~~LG~G~fG~VYKG~L-~~g~~VAVKrL~~~s~~~-~~eF~~Ev~~i~~l 548 (550)
.+||.|..++||+|.- |-++.||||+++....+. .++...|+.+|.-+
T Consensus 32 e~IG~G~sa~V~~A~c~p~~e~VAIK~inLEkc~~~ld~l~kE~~~msl~ 81 (516)
T KOG0582|consen 32 EVIGVGASAVVYLARCIPTNEVVAIKIINLEKCNNDLDALRKEVQTMSLI 81 (516)
T ss_pred EEEeccceeEeeeeeecccCCEEEEEEeehhhhhhhHHHHHHHHHHhhhc
Confidence 7999999999999965 778999999996443333 48889999998754
No 185
>KOG0615 consensus Serine/threonine protein kinase Chk2 and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=90.37 E-value=0.35 Score=50.17 Aligned_cols=50 Identities=30% Similarity=0.470 Sum_probs=36.9
Q ss_pred cceeccCCCccEEEEEe-CCCCEEEEEEcccc--CCcC---HHH--HHHHHHHhhccc
Q 008872 500 ANKLGQGGFGPVYKGKL-QDGQEIAVKRLSKA--SGQG---QEE--FMNEVMIHKDKV 549 (550)
Q Consensus 500 ~~~LG~G~fG~VYKG~L-~~g~~VAVKrL~~~--s~~~---~~e--F~~Ev~~i~~l~ 549 (550)
.+.||+|+||.|-+|.= ..|+.||||.+.+. ..+. .++ ..+|+++|-+|.
T Consensus 177 ~~~LGsGafg~Vkla~e~~tgk~vAiKIi~krk~~~~s~~~~~~~~v~~EieILkkL~ 234 (475)
T KOG0615|consen 177 SKTLGSGAFGLVKLAYEKKTGKQVAIKIINKRKSTGCSRAIAKTRDVQNEIEILKKLS 234 (475)
T ss_pred eeeecCCceeEEEEEEEcccCcEEEeeeeehhhcccccccccchhhhHHHHHHHHhcC
Confidence 47899999999999864 56899999999532 1111 122 369999998874
No 186
>PHA03207 serine/threonine kinase US3; Provisional
Probab=90.23 E-value=0.35 Score=51.01 Aligned_cols=49 Identities=18% Similarity=0.259 Sum_probs=36.8
Q ss_pred cccccceeccCCCccEEEEEeCC---CCEEEEEEccccCCcCHHHHHHHHHHhhccc
Q 008872 496 NFQLANKLGQGGFGPVYKGKLQD---GQEIAVKRLSKASGQGQEEFMNEVMIHKDKV 549 (550)
Q Consensus 496 ~Fs~~~~LG~G~fG~VYKG~L~~---g~~VAVKrL~~~s~~~~~eF~~Ev~~i~~l~ 549 (550)
.|....+||+|+||.||++...+ +..||||.+... +.+.+|+.++.++.
T Consensus 93 ~y~i~~~Lg~G~~g~Vy~~~~~~~~~~~~v~vK~~~~~-----~~~~~E~~il~~l~ 144 (392)
T PHA03207 93 QYNILSSLTPGSEGEVFVCTKHGDEQRKKVIVKAVTGG-----KTPGREIDILKTIS 144 (392)
T ss_pred ceEEEEeecCCCCeEEEEEEEcCCccceeEEEEecccc-----ccHHHHHHHHHhcC
Confidence 35555899999999999997633 568999998532 24668898888763
No 187
>KOG0578 consensus p21-activated serine/threonine protein kinase [Signal transduction mechanisms]
Probab=89.88 E-value=0.4 Score=51.56 Aligned_cols=47 Identities=36% Similarity=0.676 Sum_probs=37.2
Q ss_pred cceeccCCCccEEEEE-eCCCCEEEEEEccccCCcCHHH-HHHHHHHhhc
Q 008872 500 ANKLGQGGFGPVYKGK-LQDGQEIAVKRLSKASGQGQEE-FMNEVMIHKD 547 (550)
Q Consensus 500 ~~~LG~G~fG~VYKG~-L~~g~~VAVKrL~~~s~~~~~e-F~~Ev~~i~~ 547 (550)
-.+||+|+.|.||-+. ...+++||||+++.. .|..+| ..+|+.+|..
T Consensus 278 ~~kigqgaSG~vy~A~~~~~~~~VaiK~m~l~-~Q~~keLilnEi~Vm~~ 326 (550)
T KOG0578|consen 278 FKKIGQGATGGVYVARKISTKQEVAIKRMDLR-KQPKKELLLNEILVMRD 326 (550)
T ss_pred hhhhccccccceeeeeeccCCceEEEEEEEec-cCCchhhhHHHHHHHHh
Confidence 3689999999999874 456889999999754 555555 6889998864
No 188
>PRK10359 lipopolysaccharide core biosynthesis protein; Provisional
Probab=89.65 E-value=0.49 Score=46.11 Aligned_cols=54 Identities=9% Similarity=-0.023 Sum_probs=40.0
Q ss_pred hccccccceeccCCCccEEEEEeCCCCEEEEEEccccCCcCHH---------HHHHHHHHhhcc
Q 008872 494 TNNFQLANKLGQGGFGPVYKGKLQDGQEIAVKRLSKASGQGQE---------EFMNEVMIHKDK 548 (550)
Q Consensus 494 T~~Fs~~~~LG~G~fG~VYKG~L~~g~~VAVKrL~~~s~~~~~---------eF~~Ev~~i~~l 548 (550)
.+.+...++||.|+||.||.... ++..+|||.+...-...++ +|.+|+..++++
T Consensus 30 ~~~y~~~~~l~~~~f~~v~l~~~-~~~~~iiKvf~~~~~~~~~~~~~f~~g~~~e~Ea~~l~rL 92 (232)
T PRK10359 30 SYNIKTIKVFRNIDDTKVSLIDT-DYGKYILKVFAPKVKRTERFLKSFVKGDYYENLIVQTDRV 92 (232)
T ss_pred hCceEEEEEecCCCceEEEEEec-CCCcEEEEEechhcCchHHHHHhhhhhHHHHHHHHHHHHH
Confidence 45677889999999999998655 5678999999533222222 268998888876
No 189
>KOG0200 consensus Fibroblast/platelet-derived growth factor receptor and related receptor tyrosine kinases [Signal transduction mechanisms]
Probab=89.42 E-value=0.44 Score=53.49 Aligned_cols=48 Identities=31% Similarity=0.476 Sum_probs=37.5
Q ss_pred ceeccCCCccEEEEEeCC--------CCEEEEEEccccC-CcCHHHHHHHHHHhhcc
Q 008872 501 NKLGQGGFGPVYKGKLQD--------GQEIAVKRLSKAS-GQGQEEFMNEVMIHKDK 548 (550)
Q Consensus 501 ~~LG~G~fG~VYKG~L~~--------g~~VAVKrL~~~s-~~~~~eF~~Ev~~i~~l 548 (550)
+.||+|.||.|+||.+.. ...||||.+.... ....+.|..|+++|..+
T Consensus 302 ~~lg~g~fG~v~~~~~~~~~~~~~~~~~~VaVK~~k~~~~~~~~~~~~~El~~m~~~ 358 (609)
T KOG0200|consen 302 KYLGEGAFGQVVKALLFGLSKALLSIYVTVAVKMLKENASSSEKKDLMSELNVLKEL 358 (609)
T ss_pred ceeecccccceEeEEEeecccccccceEEEEEEecccccCcHHHHHHHHHHHHHHHh
Confidence 599999999999998731 3579999996433 33467899999998764
No 190
>KOG0596 consensus Dual specificity; serine/threonine and tyrosine kinase [Cell cycle control, cell division, chromosome partitioning]
Probab=89.15 E-value=0.18 Score=54.12 Aligned_cols=49 Identities=27% Similarity=0.392 Sum_probs=41.4
Q ss_pred ceeccCCCccEEEEEeCCCCEEEEEEcc--ccCCcCHHHHHHHHHHhhccc
Q 008872 501 NKLGQGGFGPVYKGKLQDGQEIAVKRLS--KASGQGQEEFMNEVMIHKDKV 549 (550)
Q Consensus 501 ~~LG~G~fG~VYKG~L~~g~~VAVKrL~--~~s~~~~~eF~~Ev~~i~~l~ 549 (550)
.+||+||...|||..-.+.+.+|+|+.. ....+....|++|+.+|.||-
T Consensus 367 k~iG~GGSSkV~kV~~s~~~iyalkkv~~~~~D~qtl~gy~nEI~lL~KLk 417 (677)
T KOG0596|consen 367 KQIGSGGSSKVFKVLNSDKQIYALKKVVLLEADNQTLDGYRNEIALLNKLK 417 (677)
T ss_pred HhhcCCCcceeeeeecCCCcchhhhHHHHhhcCHHHHHHHHHHHHHHHHhc
Confidence 6899999999999998888999999873 344556778999999999873
No 191
>KOG0660 consensus Mitogen-activated protein kinase [Signal transduction mechanisms]
Probab=88.60 E-value=0.39 Score=48.92 Aligned_cols=49 Identities=18% Similarity=0.432 Sum_probs=37.5
Q ss_pred cceeccCCCccEEEEEe-CCCCEEEEEEccc--cCCcCHHHHHHHHHHhhcc
Q 008872 500 ANKLGQGGFGPVYKGKL-QDGQEIAVKRLSK--ASGQGQEEFMNEVMIHKDK 548 (550)
Q Consensus 500 ~~~LG~G~fG~VYKG~L-~~g~~VAVKrL~~--~s~~~~~eF~~Ev~~i~~l 548 (550)
.+.||+|++|.|.+++- .+|+.|||||+.. ...-..+.=..|++++-++
T Consensus 27 ~~~iG~GAyGvVcsA~~~~t~~~VAIKKi~~~F~~~~~akRtlRElklLr~~ 78 (359)
T KOG0660|consen 27 IEPIGRGAYGVVCSAKDKRTGEKVAIKKILNPFENQIDAKRTLRELKLLRHL 78 (359)
T ss_pred cccccCcceeeEEEEEEcCCCCEeehhhhhhhhhchHHHHHHHHHHHHHHHh
Confidence 36899999999999976 4689999999952 2333456677888888665
No 192
>cd05039 PTKc_Csk_like Catalytic domain of C-terminal Src kinase-like Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk) subfamily; catalytic (c) domain. The Csk subfamily is composed of Csk, Chk, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk and Chk are translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk
Probab=88.05 E-value=0.51 Score=45.98 Aligned_cols=35 Identities=40% Similarity=0.694 Sum_probs=28.3
Q ss_pred ccccceeccCCCccEEEEEeCCCCEEEEEEccccCC
Q 008872 497 FQLANKLGQGGFGPVYKGKLQDGQEIAVKRLSKASG 532 (550)
Q Consensus 497 Fs~~~~LG~G~fG~VYKG~L~~g~~VAVKrL~~~s~ 532 (550)
|...++||+|+||.||++... |+.||||++.....
T Consensus 8 ~~~~~~ig~g~~g~v~~~~~~-~~~v~iK~~~~~~~ 42 (256)
T cd05039 8 LKLGATIGKGEFGDVMLGDYR-GQKVAVKCLKDDST 42 (256)
T ss_pred ccceeeeecCCCceEEEEEec-CcEEEEEEeccchh
Confidence 334489999999999999874 78999999965443
No 193
>PHA03210 serine/threonine kinase US3; Provisional
Probab=87.50 E-value=0.24 Score=54.20 Aligned_cols=55 Identities=20% Similarity=0.364 Sum_probs=35.1
Q ss_pred hccccccceeccCCCccEEEEEeCC--CCEEEEE------------------EccccCCcCHHHHHHHHHHhhccc
Q 008872 494 TNNFQLANKLGQGGFGPVYKGKLQD--GQEIAVK------------------RLSKASGQGQEEFMNEVMIHKDKV 549 (550)
Q Consensus 494 T~~Fs~~~~LG~G~fG~VYKG~L~~--g~~VAVK------------------rL~~~s~~~~~eF~~Ev~~i~~l~ 549 (550)
.+.|...++||+|+||.||++.+.. +...++| ++. ......+.|.+|+.+|.++.
T Consensus 147 ~~~Y~ii~~LG~G~fG~Vyl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~-~~~~~~~~~~~Ei~il~~l~ 221 (501)
T PHA03210 147 LAHFRVIDDLPAGAFGKIFICALRASTEEAEARRGVNSTNQGKPKCERLIAKRVK-AGSRAAIQLENEILALGRLN 221 (501)
T ss_pred hhccEEEeEecCCCCcceEEEEEeccchhhhhhhccccccccchhhhhhHhHHhh-cchHHHHHHHHHHHHHHhCC
Confidence 3457767899999999999987633 2222222 111 11223456899999998864
No 194
>KOG0583 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=87.10 E-value=0.85 Score=47.85 Aligned_cols=53 Identities=26% Similarity=0.449 Sum_probs=37.7
Q ss_pred ccccceeccCCCccEEEEEe-CCCCEEEEEEcccc----CC-cCHHHHHHHHHHhhccc
Q 008872 497 FQLANKLGQGGFGPVYKGKL-QDGQEIAVKRLSKA----SG-QGQEEFMNEVMIHKDKV 549 (550)
Q Consensus 497 Fs~~~~LG~G~fG~VYKG~L-~~g~~VAVKrL~~~----s~-~~~~eF~~Ev~~i~~l~ 549 (550)
+.-...||+|.||.||.|.- ..|..||||.+++. .. ...+....|+.+|.++.
T Consensus 19 y~~~~~lG~GsfgkV~~a~~~~t~~~vAiKii~~~~~~~~~~~~~~~i~rEi~~~~~~~ 77 (370)
T KOG0583|consen 19 YELGRTLGSGSFGKVKLAKHRLTGEKVAIKIIDRKKVSSKSQKLDELIKREISILRRLR 77 (370)
T ss_pred eeeeeeecCCCCeeEEEeeeccCCCeEEEEEechhcccccccccchhhHHHHHHHHHhc
Confidence 33347899999999999965 46799999976542 11 22344556998888764
No 195
>KOG1164 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]
Probab=86.98 E-value=0.67 Score=47.52 Aligned_cols=53 Identities=30% Similarity=0.449 Sum_probs=35.9
Q ss_pred cccccceeccCCCccEEEEEeCCC--CEEEEEEccccCCcCHHHHHHHHHHhhcc
Q 008872 496 NFQLANKLGQGGFGPVYKGKLQDG--QEIAVKRLSKASGQGQEEFMNEVMIHKDK 548 (550)
Q Consensus 496 ~Fs~~~~LG~G~fG~VYKG~L~~g--~~VAVKrL~~~s~~~~~eF~~Ev~~i~~l 548 (550)
.|.-..+||+|+||.||++.-... ..+|+|.-..........+..|+.++..+
T Consensus 19 ~~~i~~~iG~G~fG~V~~v~~~~~~~~~~a~K~e~~~~~~~~~~l~~E~~vl~~l 73 (322)
T KOG1164|consen 19 RYKLGKKIGEGGFGAVYLVSDKSEKNKEYAKKLEKKELGSKPSVLKIEIQVLKKL 73 (322)
T ss_pred ceEEeeeccccCCceEEEEEecCCCCeeEEEEEEEecccCCCccchhHHHHHHHH
Confidence 466668999999999999986443 36777765433222222677777777654
No 196
>KOG1219 consensus Uncharacterized conserved protein, contains laminin, cadherin and EGF domains [Signal transduction mechanisms]
Probab=86.03 E-value=1.3 Score=54.61 Aligned_cols=27 Identities=26% Similarity=0.477 Sum_probs=21.5
Q ss_pred cccCCCcccCCC--CCCcCCCCCCCCcCC
Q 008872 295 GKCGAFGSCNSQ--KIPICSCLLGFEPKN 321 (550)
Q Consensus 295 ~~CG~~g~C~~~--~~~~C~C~~gf~~~~ 321 (550)
..|..-|.|+.. +.+.|.||+-|.++.
T Consensus 3870 npCqhgG~C~~~~~ggy~CkCpsqysG~~ 3898 (4289)
T KOG1219|consen 3870 NPCQHGGTCISQPKGGYKCKCPSQYSGNH 3898 (4289)
T ss_pred CcccCCCEecCCCCCceEEeCcccccCcc
Confidence 468888999854 467899999998764
No 197
>KOG0984 consensus Mitogen-activated protein kinase (MAPK) kinase MKK3/MKK6 [Signal transduction mechanisms]
Probab=85.85 E-value=0.46 Score=45.04 Aligned_cols=48 Identities=31% Similarity=0.479 Sum_probs=37.4
Q ss_pred cceeccCCCccEEEEEe-CCCCEEEEEEccc-cCCcCHHHHHHHHHHhhc
Q 008872 500 ANKLGQGGFGPVYKGKL-QDGQEIAVKRLSK-ASGQGQEEFMNEVMIHKD 547 (550)
Q Consensus 500 ~~~LG~G~fG~VYKG~L-~~g~~VAVKrL~~-~s~~~~~eF~~Ev~~i~~ 547 (550)
-..||+|++|.|=|-.+ ++|+..|||++.. .+.|..+..+.|+.++-+
T Consensus 51 i~elGrGayG~vekmrh~~sg~imAvKri~~tvn~q~q~r~L~dldi~~r 100 (282)
T KOG0984|consen 51 IEELGRGAYGVVEKMRHIQSGTIMAVKRIRATVNSQEQKRLLMDLDIIMR 100 (282)
T ss_pred hhhhcCCccchhhheeeccCCeEEEEeeehhhcChHHHHHHHHhhhhhcc
Confidence 36899999999877655 6899999999953 345556678888888765
No 198
>KOG0611 consensus Predicted serine/threonine protein kinase [General function prediction only]
Probab=85.82 E-value=0.48 Score=49.02 Aligned_cols=49 Identities=27% Similarity=0.396 Sum_probs=39.6
Q ss_pred ceeccCCCccEEEEEe-CCCCEEEEEEcccc---CCcCHHHHHHHHHHhhccc
Q 008872 501 NKLGQGGFGPVYKGKL-QDGQEIAVKRLSKA---SGQGQEEFMNEVMIHKDKV 549 (550)
Q Consensus 501 ~~LG~G~fG~VYKG~L-~~g~~VAVKrL~~~---s~~~~~eF~~Ev~~i~~l~ 549 (550)
+.||+|.||.|-++.= ..|++||||.+.+. +.|..--...|++||+.|.
T Consensus 59 etLGkGTYGKVk~A~e~~sgR~VAiKsIrKdkIkdeqDlvhIRREIeIMSsLN 111 (668)
T KOG0611|consen 59 ETLGKGTYGKVKLAYEHKSGREVAIKSIRKDKIKDEQDLVHIRREIEIMSSLN 111 (668)
T ss_pred HHhcCCcccceeehhhccCCcEeehhhhhhhhcccHHHHHHHHHHHHHHhhcC
Confidence 6799999999999865 56999999998543 3455556889999999874
No 199
>KOG0579 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]
Probab=85.76 E-value=0.17 Score=54.96 Aligned_cols=47 Identities=30% Similarity=0.516 Sum_probs=37.6
Q ss_pred ceeccCCCccEEEEEeCCCC-EEEEEEccccCCcCHHHHHHHHHHhhc
Q 008872 501 NKLGQGGFGPVYKGKLQDGQ-EIAVKRLSKASGQGQEEFMNEVMIHKD 547 (550)
Q Consensus 501 ~~LG~G~fG~VYKG~L~~g~-~VAVKrL~~~s~~~~~eF~~Ev~~i~~ 547 (550)
-.||-|+||.|||++-.+-. ..|.|.++..+....++|+-|+.|++.
T Consensus 38 GELGDGAFGKVyKA~nket~~lAAaKvIetkseEELEDylVEIeILa~ 85 (1187)
T KOG0579|consen 38 GELGDGAFGKVYKAVNKETKLLAAAKVIETKSEEELEDYLVEIEILAE 85 (1187)
T ss_pred hhhcCccchhhhhhhcccchhhhhhhhhcccchhHHhhhhhhhhhhhc
Confidence 46899999999999875533 456788876667777889999999985
No 200
>cd00053 EGF Epidermal growth factor domain, found in epidermal growth factor (EGF) presents in a large number of proteins, mostly animal; the list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied; the functional significance of EGF-like domains in what appear to be unrelated proteins is not yet clear; a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase); the domain includes six cysteine residues which have been shown to be involved in disulfide bonds; the main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet; Subdomains between the conserved cysteines vary in length; the region between the 5th and 6th cysteine contains two conserved glycines of which at least one is present in most EGF-like domains; a subset of these bind calcium.
Probab=85.27 E-value=0.65 Score=29.97 Aligned_cols=30 Identities=23% Similarity=0.594 Sum_probs=22.4
Q ss_pred CccccccCCCcccCCC-CCCcCCCCCCCCcC
Q 008872 291 CDVYGKCGAFGSCNSQ-KIPICSCLLGFEPK 320 (550)
Q Consensus 291 C~~~~~CG~~g~C~~~-~~~~C~C~~gf~~~ 320 (550)
|.....|..++.|... +...|.|++||...
T Consensus 2 C~~~~~C~~~~~C~~~~~~~~C~C~~g~~g~ 32 (36)
T cd00053 2 CAASNPCSNGGTCVNTPGSYRCVCPPGYTGD 32 (36)
T ss_pred CCCCCCCCCCCEEecCCCCeEeECCCCCccc
Confidence 4435678888999754 46789999999654
No 201
>COG0661 AarF Predicted unusual protein kinase [General function prediction only]
Probab=84.84 E-value=1.2 Score=48.75 Aligned_cols=47 Identities=19% Similarity=0.335 Sum_probs=34.6
Q ss_pred cccccceeccCCCccEEEEEeCCCCEEEEEEccccCCcCHHHHHHHHHHhh
Q 008872 496 NFQLANKLGQGGFGPVYKGKLQDGQEIAVKRLSKASGQGQEEFMNEVMIHK 546 (550)
Q Consensus 496 ~Fs~~~~LG~G~fG~VYKG~L~~g~~VAVKrL~~~s~~~~~eF~~Ev~~i~ 546 (550)
.|++ +=|+.++-|.||+|+|.+|+.||||...- .-++.+...+.+|.
T Consensus 127 eF~~-~PiAsASIaQVH~A~L~sG~~VAVKVqrP---gi~~~i~~DL~il~ 173 (517)
T COG0661 127 EFEP-EPIASASIAQVHRAVLKSGEEVAVKVQRP---GIRERIEADLKLLR 173 (517)
T ss_pred HcCC-CchhhhhHhhheeEEecCCCEEEEEecCC---ChHHHHHHHHHHHH
Confidence 4543 56899999999999999999999999852 22344555555544
No 202
>KOG1163 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]
Probab=84.81 E-value=1.2 Score=43.32 Aligned_cols=41 Identities=39% Similarity=0.705 Sum_probs=30.5
Q ss_pred HHHHHHhhccccccceeccCCCccEEEEEe-CCCCEEEEEEcc
Q 008872 487 FEELANATNNFQLANKLGQGGFGPVYKGKL-QDGQEIAVKRLS 528 (550)
Q Consensus 487 ~~eL~~AT~~Fs~~~~LG~G~fG~VYKG~L-~~g~~VAVKrL~ 528 (550)
.+++..+.+ +.--.+||.|+||.+|.|.- .+|.+||||.=+
T Consensus 8 ~~~~iv~gk-y~lvrkiGsGSFGdIy~~~~i~~ge~VAiK~Es 49 (341)
T KOG1163|consen 8 LEELIVGGK-YKLVRKIGSGSFGDIYLGISITSGEEVAIKLES 49 (341)
T ss_pred hhhheeccc-eEEEEeecCCchhheeeeeeccCCceEEEEeec
Confidence 344444432 44458999999999999964 789999999854
No 203
>PF07645 EGF_CA: Calcium-binding EGF domain; InterPro: IPR001881 A sequence of about forty amino-acid residues found in epidermal growth factor (EGF) has been shown [, , , , , ] to be present in a large number of membrane-bound and extracellular, mostly animal, proteins. Many of these proteins require calcium for their biological function and a calcium-binding site has been found at the N terminus of some EGF-like domains []. Calcium-binding may be crucial for numerous protein-protein interactions. For human coagulation factor IX it has been shown [] that the calcium-ligands form a pentagonal bipyramid. The first, third and fourth conserved negatively charged or polar residues are side chain ligands. The latter is possibly hydroxylated (see aspartic acid and asparagine hydroxylation site) []. A conserved aromatic residue, as well as the second conserved negative residue, are thought to be involved in stabilising the calcium-binding site. As in non-calcium binding EGF-like domains, there are six conserved cysteines and the structure of both types is very similar as calcium-binding induces only strictly local structural changes []. +------------------+ +---------+ | | | | nxnnC-x(3,14)-C-x(3,7)-CxxbxxxxaxC-x(1,6)-C-x(8,13)-Cx | | +------------------+ 'n': negatively charged or polar residue [DEQN] 'b': possibly beta-hydroxylated residue [DN] 'a': aromatic amino acid 'C': cysteine, involved in disulphide bond 'x': any amino acid. ; GO: 0005509 calcium ion binding; PDB: 2VJ3_A 1TOZ_A 1LMJ_A 1UZQ_A 1UZK_A 1UZJ_B 1UZP_A 1EMO_A 1EMN_A 2RR0_A ....
Probab=84.35 E-value=0.25 Score=34.25 Aligned_cols=32 Identities=28% Similarity=0.657 Sum_probs=25.1
Q ss_pred CCCccc-cccCCCcccCC-CCCCcCCCCCCCCcC
Q 008872 289 NDCDVY-GKCGAFGSCNS-QKIPICSCLLGFEPK 320 (550)
Q Consensus 289 ~~C~~~-~~CG~~g~C~~-~~~~~C~C~~gf~~~ 320 (550)
+.|... ..|..++.|.. .++..|.|++||+..
T Consensus 3 dEC~~~~~~C~~~~~C~N~~Gsy~C~C~~Gy~~~ 36 (42)
T PF07645_consen 3 DECAEGPHNCPENGTCVNTEGSYSCSCPPGYELN 36 (42)
T ss_dssp STTTTTSSSSSTTSEEEEETTEEEEEESTTEEEC
T ss_pred cccCCCCCcCCCCCEEEcCCCCEEeeCCCCcEEC
Confidence 568774 48999999974 357889999999843
No 204
>KOG4721 consensus Serine/threonine protein kinase, contains leucine zipper domain [Signal transduction mechanisms]
Probab=84.06 E-value=0.65 Score=50.15 Aligned_cols=38 Identities=34% Similarity=0.668 Sum_probs=31.2
Q ss_pred cccHHHHHHhhccccccceeccCCCccEEEEEeCCCCEEEEEEccc
Q 008872 484 VFNFEELANATNNFQLANKLGQGGFGPVYKGKLQDGQEIAVKRLSK 529 (550)
Q Consensus 484 ~fs~~eL~~AT~~Fs~~~~LG~G~fG~VYKG~L~~g~~VAVKrL~~ 529 (550)
.+.|++|.+- +-||.|+-|.||.|.|. ++.|||||++.
T Consensus 120 eiPFe~IsEL-------eWlGSGaQGAVF~Grl~-netVAVKKV~e 157 (904)
T KOG4721|consen 120 EIPFEEISEL-------EWLGSGAQGAVFLGRLH-NETVAVKKVRE 157 (904)
T ss_pred cCCHHHhhhh-------hhhccCcccceeeeecc-CceehhHHHhh
Confidence 4677777654 78999999999999995 57899999853
No 205
>KOG0986 consensus G protein-coupled receptor kinase [Signal transduction mechanisms]
Probab=83.95 E-value=0.3 Score=51.25 Aligned_cols=55 Identities=33% Similarity=0.537 Sum_probs=42.3
Q ss_pred ccccccceeccCCCccEEEEEeCC-CCEEEEEEcccc---CCcCHHHHHHHHHHhhccc
Q 008872 495 NNFQLANKLGQGGFGPVYKGKLQD-GQEIAVKRLSKA---SGQGQEEFMNEVMIHKDKV 549 (550)
Q Consensus 495 ~~Fs~~~~LG~G~fG~VYKG~L~~-g~~VAVKrL~~~---s~~~~~eF~~Ev~~i~~l~ 549 (550)
+.|..-.+||+||||.||-....+ |...|-|+|++. ..+++.--++|-.++.++.
T Consensus 185 n~F~~~RvlGkGGFGEV~acqvraTGKMYAcKkL~KKRiKkr~ge~maLnEk~iL~kV~ 243 (591)
T KOG0986|consen 185 NTFRVYRVLGKGGFGEVCACQVRATGKMYACKKLDKKRIKKRKGETMALNEKQILEKVS 243 (591)
T ss_pred cceeeeEEEecccccceeEEEEecchhhHHHHHHHHHHHHHhhhhHHhhHHHHHHHHhc
Confidence 458888999999999999888755 888999999543 3455555677877777753
No 206
>KOG1027 consensus Serine/threonine protein kinase and endoribonuclease ERN1/IRE1, sensor of the unfolded protein response pathway [Signal transduction mechanisms]
Probab=83.56 E-value=0.48 Score=53.24 Aligned_cols=48 Identities=31% Similarity=0.440 Sum_probs=33.7
Q ss_pred ccccccceeccCCCcc-EEEEEeCCCCEEEEEEccccCCcCHHHHHHHHHHhh
Q 008872 495 NNFQLANKLGQGGFGP-VYKGKLQDGQEIAVKRLSKASGQGQEEFMNEVMIHK 546 (550)
Q Consensus 495 ~~Fs~~~~LG~G~fG~-VYKG~L~~g~~VAVKrL~~~s~~~~~eF~~Ev~~i~ 546 (550)
.-|+.++++|.|.-|+ ||+|.. +|++||||||-.. ..+--.+||..+.
T Consensus 509 ~~~~~~eilG~Gs~Gt~Vf~G~y-e~R~VAVKrll~e---~~~~A~rEi~lL~ 557 (903)
T KOG1027|consen 509 LFFSPKEILGYGSNGTVVFRGVY-EGREVAVKRLLEE---FFDFAQREIQLLQ 557 (903)
T ss_pred eeeccHHHcccCCCCcEEEEEee-CCceehHHHHhhH---hHHHHHHHHHHHH
Confidence 3477778999999985 699999 7899999999321 1111245666553
No 207
>KOG0607 consensus MAP kinase-interacting kinase and related serine/threonine protein kinases [Signal transduction mechanisms]
Probab=83.13 E-value=0.99 Score=45.51 Aligned_cols=56 Identities=30% Similarity=0.503 Sum_probs=44.0
Q ss_pred cHHHHHHhhccccccceeccCCCccEEEEE-eCCCCEEEEEEccccCCcCHHHHHHHHHHhh
Q 008872 486 NFEELANATNNFQLANKLGQGGFGPVYKGK-LQDGQEIAVKRLSKASGQGQEEFMNEVMIHK 546 (550)
Q Consensus 486 s~~eL~~AT~~Fs~~~~LG~G~fG~VYKG~-L~~g~~VAVKrL~~~s~~~~~eF~~Ev~~i~ 546 (550)
+|+|+-+-|. ++||+|+++.|--.+ +..|.+.|||.+++..+........||+++-
T Consensus 74 ~F~d~YkLt~-----e~LGeGAyasVqtcv~i~t~~EYAVKiidKq~gHsR~RvfREVe~f~ 130 (463)
T KOG0607|consen 74 KFEDMYKLTS-----ELLGEGAYASVQTCVSIQTGKEYAVKIIDKQPGHSRSRVFREVETFY 130 (463)
T ss_pred hHHHHHHhHH-----HHhcCccceeeeeeeeeccchhhhhhhhhcCCchHHHHHHHHHHHHH
Confidence 4667777765 799999999998654 5678999999998776666667778888764
No 208
>KOG0592 consensus 3-phosphoinositide-dependent protein kinase (PDK1) [Signal transduction mechanisms]
Probab=82.09 E-value=0.74 Score=49.43 Aligned_cols=54 Identities=24% Similarity=0.362 Sum_probs=36.6
Q ss_pred ccccccceeccCCCccEEEEEe-CCCCEEEEEEcccc---CCcCHHHHHHHHHHhhcc
Q 008872 495 NNFQLANKLGQGGFGPVYKGKL-QDGQEIAVKRLSKA---SGQGQEEFMNEVMIHKDK 548 (550)
Q Consensus 495 ~~Fs~~~~LG~G~fG~VYKG~L-~~g~~VAVKrL~~~---s~~~~~eF~~Ev~~i~~l 548 (550)
++|.-.++||+|+|.+||+++= ..+.++|||.|++. ..+..+-...|=.+|.+|
T Consensus 73 ~DF~Fg~~lGeGSYStV~~A~~~~t~keYAiKVl~K~~Iike~KvkYV~~Ek~~l~~L 130 (604)
T KOG0592|consen 73 NDFKFGKILGEGSYSTVVLAREKATGKEYAIKVLDKRYIIKEKKVKYVTREKEALTQL 130 (604)
T ss_pred hhcchhheeccccceeEEEeeecCCCceeeHhhhhHHHHHhhcccchhhHHHHHHHHh
Confidence 3455558999999999999975 34789999999642 222233344555555554
No 209
>KOG1166 consensus Mitotic checkpoint serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]
Probab=82.09 E-value=0.78 Score=53.38 Aligned_cols=37 Identities=24% Similarity=0.552 Sum_probs=31.0
Q ss_pred HHhhccccccceeccCCCccEEEEEeCCCCEEEEEEc
Q 008872 491 ANATNNFQLANKLGQGGFGPVYKGKLQDGQEIAVKRL 527 (550)
Q Consensus 491 ~~AT~~Fs~~~~LG~G~fG~VYKG~L~~g~~VAVKrL 527 (550)
+.....|.-...||+|++|+||+|+-.+|+.||+|.=
T Consensus 694 ~~~~~~~~I~~e~G~g~y~~vy~a~~~~~~~~alK~e 730 (974)
T KOG1166|consen 694 EVGGEKFCISKEIGEGSYGSVYVATHSNGKLVALKVE 730 (974)
T ss_pred eecceeEEEEeeeccccceEEEEeecCCCcEEEEEee
Confidence 3344556677999999999999999999999999974
No 210
>KOG2345 consensus Serine/threonine protein kinase/TGF-beta stimulated factor [Transcription; Lipid transport and metabolism; Signal transduction mechanisms]
Probab=81.98 E-value=1.1 Score=43.70 Aligned_cols=50 Identities=32% Similarity=0.401 Sum_probs=39.4
Q ss_pred ccceeccCCCccEEEEE-eCCCCEEEEEEccccCCcCHHHHHHHHHHhhcc
Q 008872 499 LANKLGQGGFGPVYKGK-LQDGQEIAVKRLSKASGQGQEEFMNEVMIHKDK 548 (550)
Q Consensus 499 ~~~~LG~G~fG~VYKG~-L~~g~~VAVKrL~~~s~~~~~eF~~Ev~~i~~l 548 (550)
-.++||+|||.-||-++ +.++...|+||+...+.++.++-+.|++.-.++
T Consensus 25 i~~~LgeGGfsfv~LV~~~s~~~~YAlKkI~c~~~~~~e~~~rEid~~rkf 75 (302)
T KOG2345|consen 25 IQRLLGEGGFSFVDLVKGLSTGHLYALKKILCHSQEDIEEALREIDNHRKF 75 (302)
T ss_pred EeeeecCCCceeeeeecccCcccchhhheeeccchHHHHHHHHHHHHHHhh
Confidence 34899999999999776 567889999999666556677788888765543
No 211
>KOG1024 consensus Receptor-like protein tyrosine kinase RYK/derailed [Signal transduction mechanisms]
Probab=81.83 E-value=0.75 Score=47.54 Aligned_cols=60 Identities=28% Similarity=0.433 Sum_probs=41.5
Q ss_pred HHHHHhhccccccceeccCCCccEEEEEeCC------CCEEEEEEccc-cCCcCHHHHHHHHHHhhc
Q 008872 488 EELANATNNFQLANKLGQGGFGPVYKGKLQD------GQEIAVKRLSK-ASGQGQEEFMNEVMIHKD 547 (550)
Q Consensus 488 ~eL~~AT~~Fs~~~~LG~G~fG~VYKG~L~~------g~~VAVKrL~~-~s~~~~~eF~~Ev~~i~~ 547 (550)
.+|......|.-..++-+|.||.||+|++.+ .+.|-||.++. .+.-...-|+.|..++-.
T Consensus 277 ~~l~v~r~Rv~l~~llqEGtFGri~~gI~~eEdt~n~~q~v~vKTvk~~AS~iQv~~~L~es~lly~ 343 (563)
T KOG1024|consen 277 QELTVQRCRVRLSCLLQEGTFGRIYRGIWREEDTYNDCQEVLVKTVKQHASQIQVNLLLQESMLLYG 343 (563)
T ss_pred HhhhhhhhheechhhhhcCchhheeeeeecccCCcchHHHHHHHHHHhcccHHHHHHHHHHHHHHhc
Confidence 4444444556666889999999999997743 35678888843 444455678888776643
No 212
>cd05083 PTKc_Chk Catalytic domain of the Protein Tyrosine Kinase, Csk homologous kinase. Protein Tyrosine Kinase (PTK) family; Csk homologous kinase (Chk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. Chk is also referred to as megakaryocyte-associated tyrosine kinase (Matk). To inhibit Src kinases, Chk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Chk inhibit Src ki
Probab=81.19 E-value=1.1 Score=43.66 Aligned_cols=31 Identities=39% Similarity=0.751 Sum_probs=25.9
Q ss_pred cccceeccCCCccEEEEEeCCCCEEEEEEccc
Q 008872 498 QLANKLGQGGFGPVYKGKLQDGQEIAVKRLSK 529 (550)
Q Consensus 498 s~~~~LG~G~fG~VYKG~L~~g~~VAVKrL~~ 529 (550)
...++||+|+||.||+|.. .+..||+|.+..
T Consensus 9 ~~~~~lg~g~~g~v~~~~~-~~~~~~iK~~~~ 39 (254)
T cd05083 9 TLGEIIGEGEFGAVLQGEY-TGQKVAVKNIKC 39 (254)
T ss_pred eeeeeeccCCCCceEeccc-CCCceEEEeecC
Confidence 3348999999999999985 678899999854
No 213
>cd05082 PTKc_Csk Catalytic domain of the Protein Tyrosine Kinase, C-terminal Src kinase. Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, re
Probab=80.92 E-value=1.5 Score=42.67 Aligned_cols=33 Identities=33% Similarity=0.689 Sum_probs=26.8
Q ss_pred ccccceeccCCCccEEEEEeCCCCEEEEEEcccc
Q 008872 497 FQLANKLGQGGFGPVYKGKLQDGQEIAVKRLSKA 530 (550)
Q Consensus 497 Fs~~~~LG~G~fG~VYKG~L~~g~~VAVKrL~~~ 530 (550)
|...++||+|+||.||++... |..||+|.++..
T Consensus 8 ~~~~~~lg~g~~~~v~~~~~~-~~~~~~k~~~~~ 40 (256)
T cd05082 8 LKLLQTIGKGEFGDVMLGDYR-GNKVAVKCIKND 40 (256)
T ss_pred CeeeeeecccCCCeEEEEEEc-CCcEEEEEeCCC
Confidence 344489999999999999875 778999988544
No 214
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=80.38 E-value=25 Score=36.98 Aligned_cols=77 Identities=18% Similarity=0.329 Sum_probs=47.7
Q ss_pred CCceEEEEeCCCC----------------CCCCCCceEEEe-eCCcEEEEcC-CccEEEeeccccCcCC-----CCceEE
Q 008872 72 ANKTVVWVANRNK----------------PLIDSSGIFTIS-EDGNLVVLNG-KKQVHWSSNVSSLANN-----SNTRAQ 128 (550)
Q Consensus 72 ~~~~~vW~anr~~----------------p~~~~~~~l~l~-~~G~L~l~~~-~~~~~W~s~~~~~~~~-----~~~~~~ 128 (550)
....++|..+-.. |+. .+..+.+. .+|.|+-.|. +|.++|+.+....... ......
T Consensus 87 ~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v-~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~ssP~v~~~~v~v 165 (394)
T PRK11138 87 DTGKEIWSVDLSEKDGWFSKNKSALLSGGVTV-AGGKVYIGSEKGQVYALNAEDGEVAWQTKVAGEALSRPVVSDGLVLV 165 (394)
T ss_pred CCCcEeeEEcCCCcccccccccccccccccEE-ECCEEEEEcCCCEEEEEECCCCCCcccccCCCceecCCEEECCEEEE
Confidence 4568899876433 111 12345554 4688887886 6899999875432100 122233
Q ss_pred EecCCCeEEEeCCCCceeeee
Q 008872 129 LLDSGNLVLHDNISQVSIWDS 149 (550)
Q Consensus 129 l~d~GNlvl~~~~~~~~~WqS 149 (550)
...+|.|+-+|..+++++|+-
T Consensus 166 ~~~~g~l~ald~~tG~~~W~~ 186 (394)
T PRK11138 166 HTSNGMLQALNESDGAVKWTV 186 (394)
T ss_pred ECCCCEEEEEEccCCCEeeee
Confidence 355788888888778899986
No 215
>PF12661 hEGF: Human growth factor-like EGF; PDB: 2YGQ_A 2E26_A 3A7Q_A 2YGP_A 2YGO_A 1HRE_A 1HAE_A 1HAF_A 1HRF_A.
Probab=79.73 E-value=0.39 Score=24.49 Aligned_cols=11 Identities=27% Similarity=0.785 Sum_probs=8.0
Q ss_pred cCCCCCCCCcC
Q 008872 310 ICSCLLGFEPK 320 (550)
Q Consensus 310 ~C~C~~gf~~~ 320 (550)
.|.|++||+..
T Consensus 1 ~C~C~~G~~G~ 11 (13)
T PF12661_consen 1 TCQCPPGWTGP 11 (13)
T ss_dssp EEEE-TTEETT
T ss_pred CccCcCCCcCC
Confidence 48999999764
No 216
>smart00179 EGF_CA Calcium-binding EGF-like domain.
Probab=79.37 E-value=1.4 Score=29.22 Aligned_cols=30 Identities=23% Similarity=0.623 Sum_probs=22.5
Q ss_pred CCCccccccCCCcccCCC-CCCcCCCCCCCC
Q 008872 289 NDCDVYGKCGAFGSCNSQ-KIPICSCLLGFE 318 (550)
Q Consensus 289 ~~C~~~~~CG~~g~C~~~-~~~~C~C~~gf~ 318 (550)
+.|.....|...+.|... +...|.|++||.
T Consensus 3 ~~C~~~~~C~~~~~C~~~~g~~~C~C~~g~~ 33 (39)
T smart00179 3 DECASGNPCQNGGTCVNTVGSYRCECPPGYT 33 (39)
T ss_pred ccCcCCCCcCCCCEeECCCCCeEeECCCCCc
Confidence 457654568888899754 456899999997
No 217
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=78.80 E-value=2.1 Score=47.54 Aligned_cols=50 Identities=24% Similarity=0.449 Sum_probs=37.3
Q ss_pred cceeccCCCccEEEEEeCCC-CEEEEEEccccCCcCHHHHHHHHHHhhccc
Q 008872 500 ANKLGQGGFGPVYKGKLQDG-QEIAVKRLSKASGQGQEEFMNEVMIHKDKV 549 (550)
Q Consensus 500 ~~~LG~G~fG~VYKG~L~~g-~~VAVKrL~~~s~~~~~eF~~Ev~~i~~l~ 549 (550)
.-+||+|.+|+||-|.-.+. ..+|||-+.....+...-..+|+.+-.+|.
T Consensus 580 rvVLGKGTYG~VYA~RD~~tqvrIaIKEIpekdsr~~QPLhEEIaLH~~Lr 630 (1226)
T KOG4279|consen 580 RVVLGKGTYGTVYAARDMDTQVRIAIKEIPEKDSREVQPLHEEIALHSTLR 630 (1226)
T ss_pred eEEeecCceeEEEeeccccceeEEEeeecccccchhhccHHHHHHHHHHHh
Confidence 35899999999999975443 479999996554555566778888776653
No 218
>KOG0585 consensus Ca2+/calmodulin-dependent protein kinase kinase beta and related serine/threonine protein kinases [Signal transduction mechanisms]
Probab=78.74 E-value=2.9 Score=44.40 Aligned_cols=55 Identities=31% Similarity=0.436 Sum_probs=39.7
Q ss_pred ccccccceeccCCCccEEEEEe-CCCCEEEEEEcccc--CCc------------CHHHHHHHHHHhhccc
Q 008872 495 NNFQLANKLGQGGFGPVYKGKL-QDGQEIAVKRLSKA--SGQ------------GQEEFMNEVMIHKDKV 549 (550)
Q Consensus 495 ~~Fs~~~~LG~G~fG~VYKG~L-~~g~~VAVKrL~~~--s~~------------~~~eF~~Ev~~i~~l~ 549 (550)
|.|.....||+|.||.|-++.= .+++.||||.|.+. ..+ ..+....|+.+|.|+.
T Consensus 97 Nqy~l~~eiG~G~yGkVkLar~~~~~~l~AiKil~K~~~~~~~~~~~~~a~~~~~~ekv~~EIailKkl~ 166 (576)
T KOG0585|consen 97 NQYELIKEIGSGQYGKVKLARDEVDGKLYAIKILPKKELRRQYGFPRQPAMKLMPIEKVRREIAILKKLH 166 (576)
T ss_pred hheehhhhhcCCccceEEEEeecCCCcEEEEEeechhhhhhhcccccccccccCcHHHHHHHHHHHHhcC
Confidence 3444457899999999988854 46899999999532 111 1246889999998874
No 219
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=78.49 E-value=2.4 Score=29.00 Aligned_cols=13 Identities=38% Similarity=0.521 Sum_probs=5.1
Q ss_pred EEeehhhHHHHHH
Q 008872 424 ILSVIVGIIAIAI 436 (550)
Q Consensus 424 ~i~v~~~~lvl~~ 436 (550)
.+++.++++++++
T Consensus 16 ~VvVPV~vI~~vl 28 (40)
T PF08693_consen 16 GVVVPVGVIIIVL 28 (40)
T ss_pred EEEechHHHHHHH
Confidence 3333344443333
No 220
>KOG0610 consensus Putative serine/threonine protein kinase [General function prediction only]
Probab=76.88 E-value=2.3 Score=44.40 Aligned_cols=49 Identities=27% Similarity=0.262 Sum_probs=36.4
Q ss_pred ceeccCCCccEEEEEeCC-CCEEEEEEccccC---CcCHHHHHHHHHHhhccc
Q 008872 501 NKLGQGGFGPVYKGKLQD-GQEIAVKRLSKAS---GQGQEEFMNEVMIHKDKV 549 (550)
Q Consensus 501 ~~LG~G~fG~VYKG~L~~-g~~VAVKrL~~~s---~~~~~eF~~Ev~~i~~l~ 549 (550)
..||.|.-|+||-+.+.+ +...|+|.+++.. ......-..|-+||+.+.
T Consensus 83 k~LG~GdiG~VyL~~l~~t~~~fAmKVmdK~~l~~rkKl~Ra~tE~eIL~~lD 135 (459)
T KOG0610|consen 83 KRLGCGDIGTVYLVELRGTNCLFAMKVMDKESLASRKKLKRAQTEREILSLLD 135 (459)
T ss_pred HHcCCCCceeEEEEEecCCCceEEEEEecHHHHhhhhHHHHHHHHHHHHHhcC
Confidence 689999999999999966 4789999997543 223344566667776653
No 221
>PHA03390 pk1 serine/threonine-protein kinase 1; Provisional
Probab=75.34 E-value=5.7 Score=39.06 Aligned_cols=35 Identities=26% Similarity=0.272 Sum_probs=25.8
Q ss_pred ccccccce--eccCCCccEEEEEe-CCCCEEEEEEccc
Q 008872 495 NNFQLANK--LGQGGFGPVYKGKL-QDGQEIAVKRLSK 529 (550)
Q Consensus 495 ~~Fs~~~~--LG~G~fG~VYKG~L-~~g~~VAVKrL~~ 529 (550)
+++...+. ||+|+||.||++.- .++..+|+|.+..
T Consensus 14 ~~~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~k~~~~ 51 (267)
T PHA03390 14 KNCEIVKKLKLIDGKFGKVSVLKHKPTQKLFVQKIIKA 51 (267)
T ss_pred HhhccccceeecCCCceEEEEEEEcCCCcEEEEEEEeh
Confidence 34333344 59999999999986 4578899998853
No 222
>PF12662 cEGF: Complement Clr-like EGF-like
Probab=74.79 E-value=1.4 Score=26.64 Aligned_cols=12 Identities=33% Similarity=0.780 Sum_probs=10.2
Q ss_pred CcCCCCCCCCcC
Q 008872 309 PICSCLLGFEPK 320 (550)
Q Consensus 309 ~~C~C~~gf~~~ 320 (550)
..|+|++||+..
T Consensus 2 y~C~C~~Gy~l~ 13 (24)
T PF12662_consen 2 YTCSCPPGYQLS 13 (24)
T ss_pred EEeeCCCCCcCC
Confidence 469999999865
No 223
>cd00054 EGF_CA Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements.
Probab=74.45 E-value=2.5 Score=27.55 Aligned_cols=31 Identities=26% Similarity=0.607 Sum_probs=22.3
Q ss_pred CCCccccccCCCcccCCC-CCCcCCCCCCCCc
Q 008872 289 NDCDVYGKCGAFGSCNSQ-KIPICSCLLGFEP 319 (550)
Q Consensus 289 ~~C~~~~~CG~~g~C~~~-~~~~C~C~~gf~~ 319 (550)
+.|.....|...+.|... +...|.|++||..
T Consensus 3 ~~C~~~~~C~~~~~C~~~~~~~~C~C~~g~~g 34 (38)
T cd00054 3 DECASGNPCQNGGTCVNTVGSYRCSCPPGYTG 34 (38)
T ss_pred ccCCCCCCcCCCCEeECCCCCeEeECCCCCcC
Confidence 456553568778889743 4568999999975
No 224
>KOG1165 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]
Probab=74.08 E-value=3.4 Score=42.09 Aligned_cols=45 Identities=27% Similarity=0.597 Sum_probs=32.4
Q ss_pred cccccceeccCCCccEEEEE-eCCCCEEEEEEcc--ccCCcCHHHHHH
Q 008872 496 NFQLANKLGQGGFGPVYKGK-LQDGQEIAVKRLS--KASGQGQEEFMN 540 (550)
Q Consensus 496 ~Fs~~~~LG~G~fG~VYKG~-L~~g~~VAVKrL~--~~s~~~~~eF~~ 540 (550)
+|.-..+||+|.||..+.|+ |-+++.||||-=- ....|-..||+.
T Consensus 29 hyrVGkKIGeGsFG~lf~G~Nl~nne~VAIKfEPrkS~APQLrdEYr~ 76 (449)
T KOG1165|consen 29 HYRVGKKIGEGSFGVLFLGKNLYNNEPVAIKFEPRKSEAPQLRDEYRT 76 (449)
T ss_pred cceeccccccCcceeeecccccccCceEEEEeccccCCcchHHHHHHH
Confidence 35555899999999999985 5678999999652 223455566544
No 225
>PF07974 EGF_2: EGF-like domain; InterPro: IPR013111 A sequence of about thirty to forty amino-acid residues long found in the sequence of epidermal growth factor (EGF) has been shown [, , , , ] to be present, in a more or less conserved form, in a large number of other, mostly animal proteins. The list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied. The functional significance of EGF domains in what appear to be unrelated proteins is not yet clear. However, a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase). The EGF domain includes six cysteine residues which have been shown (in EGF) to be involved in disulphide bonds. The main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet. Subdomains between the conserved cysteines vary in length. This entry contains EGF domains found in a variety of extracellular and membrane proteins
Probab=73.69 E-value=2.9 Score=27.14 Aligned_cols=25 Identities=28% Similarity=0.670 Sum_probs=19.5
Q ss_pred cccCCCcccCCCCCCcCCCCCCCCcC
Q 008872 295 GKCGAFGSCNSQKIPICSCLLGFEPK 320 (550)
Q Consensus 295 ~~CG~~g~C~~~~~~~C~C~~gf~~~ 320 (550)
..|+..|.|... ...|.|.+||...
T Consensus 6 ~~C~~~G~C~~~-~g~C~C~~g~~G~ 30 (32)
T PF07974_consen 6 NICSGHGTCVSP-CGRCVCDSGYTGP 30 (32)
T ss_pred CccCCCCEEeCC-CCEEECCCCCcCC
Confidence 468889999754 4579999999754
No 226
>PF01683 EB: EB module; InterPro: IPR006149 The EB domain has no known function. It is found in several Caenorhabditis sp. and Drosophila sp. proteins. The domain contains 8 conserved cysteines that probably form four disulphide bridges and is found associated with kunitz domains IPR002223 from INTERPRO
Probab=73.61 E-value=2.5 Score=30.55 Aligned_cols=34 Identities=21% Similarity=0.510 Sum_probs=27.5
Q ss_pred eecCCCCccccccCCCcccCCCCCCcCCCCCCCCcCC
Q 008872 285 FYPTNDCDVYGKCGAFGSCNSQKIPICSCLLGFEPKN 321 (550)
Q Consensus 285 ~~p~~~C~~~~~CG~~g~C~~~~~~~C~C~~gf~~~~ 321 (550)
..|.+.|.....|-.+++|.. ..|.|++||...+
T Consensus 16 ~~~g~~C~~~~qC~~~s~C~~---g~C~C~~g~~~~~ 49 (52)
T PF01683_consen 16 VQPGESCESDEQCIGGSVCVN---GRCQCPPGYVEVG 49 (52)
T ss_pred CCCCCCCCCcCCCCCcCEEcC---CEeECCCCCEecC
Confidence 446678999999999999953 4799999997653
No 227
>KOG0668 consensus Casein kinase II, alpha subunit [Signal transduction mechanisms; Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=73.10 E-value=2.2 Score=41.17 Aligned_cols=46 Identities=20% Similarity=0.443 Sum_probs=37.8
Q ss_pred ceeccCCCccEEEEE-eCCCCEEEEEEccccCCcCHHHHHHHHHHhhccc
Q 008872 501 NKLGQGGFGPVYKGK-LQDGQEIAVKRLSKASGQGQEEFMNEVMIHKDKV 549 (550)
Q Consensus 501 ~~LG~G~fG~VYKG~-L~~g~~VAVKrL~~~s~~~~~eF~~Ev~~i~~l~ 549 (550)
+++|+|.+..||.|. +.+.+.+.||.|+. ...+....|++++-.|.
T Consensus 44 rk~GRGKYSEVFeg~~~~~~eK~ViKiLKP---VkkkKIkREikIL~nL~ 90 (338)
T KOG0668|consen 44 RKVGRGKYSEVFEGINITNNEKCVIKILKP---VKKKKIKREIKILQNLR 90 (338)
T ss_pred HHHcCccHhhHhcccccCCCceEEEeeech---HHHHHHHHHHHHHHhcc
Confidence 789999999999996 35677899999963 34677899999987764
No 228
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=72.64 E-value=2.5 Score=37.91 Aligned_cols=13 Identities=38% Similarity=0.266 Sum_probs=6.0
Q ss_pred ceEEEEEeehhhH
Q 008872 419 MKLVIILSVIVGI 431 (550)
Q Consensus 419 ~~~~i~i~v~~~~ 431 (550)
++++|.+++.+++
T Consensus 48 knIVIGvVVGVGg 60 (154)
T PF04478_consen 48 KNIVIGVVVGVGG 60 (154)
T ss_pred ccEEEEEEecccH
Confidence 3455554444443
No 229
>KOG0586 consensus Serine/threonine protein kinase [General function prediction only]
Probab=70.84 E-value=6.4 Score=43.03 Aligned_cols=56 Identities=23% Similarity=0.351 Sum_probs=42.0
Q ss_pred hccccccceeccCCCccEEEEEeC-CCCEEEEEEccccCCc--CHHHHHHHHHHhhccc
Q 008872 494 TNNFQLANKLGQGGFGPVYKGKLQ-DGQEIAVKRLSKASGQ--GQEEFMNEVMIHKDKV 549 (550)
Q Consensus 494 T~~Fs~~~~LG~G~fG~VYKG~L~-~g~~VAVKrL~~~s~~--~~~eF~~Ev~~i~~l~ 549 (550)
+.++.....||+|-|+.|.-+... .|+.||||.+++.... ....+..||.+|-.|.
T Consensus 55 vg~y~i~~tig~g~f~~V~La~~~~t~~~VaiK~idkt~ln~~~~~k~~rev~imk~l~ 113 (596)
T KOG0586|consen 55 VGLYVIIKTIGKGNFAKVKLARHILTGTEVAIKIIDKTQLNPSKRQKLGREVDIMKSLN 113 (596)
T ss_pred ccceeeeeeeccceeEEEEeeEecCCCceEEEEEehhcccChHHHHHHHHHHHHHHhcC
Confidence 445556689999999999998774 4899999998754322 2345889999987653
No 230
>PF12947 EGF_3: EGF domain; InterPro: IPR024731 This entry represents an EGF domain found in the the C terminus of malarial parasite merozoite surface protein 1 [], as well as other proteins.; PDB: 2NPR_A 1N1I_C 1B9W_A 1YO8_A 2RHP_A.
Probab=69.51 E-value=1 Score=30.07 Aligned_cols=27 Identities=26% Similarity=0.667 Sum_probs=19.1
Q ss_pred ccccCCCcccCCC-CCCcCCCCCCCCcC
Q 008872 294 YGKCGAFGSCNSQ-KIPICSCLLGFEPK 320 (550)
Q Consensus 294 ~~~CG~~g~C~~~-~~~~C~C~~gf~~~ 320 (550)
.+-|.++..|... +...|.|.+||+..
T Consensus 5 ~~~C~~nA~C~~~~~~~~C~C~~Gy~Gd 32 (36)
T PF12947_consen 5 NGGCHPNATCTNTGGSYTCTCKPGYEGD 32 (36)
T ss_dssp GGGS-TTCEEEE-TTSEEEEE-CEEECC
T ss_pred CCCCCCCcEeecCCCCEEeECCCCCccC
Confidence 3568899999753 46789999999765
No 231
>PF09064 Tme5_EGF_like: Thrombomodulin like fifth domain, EGF-like; InterPro: IPR015149 This domain adopts a fold similar to other EGF domains, with a flat major and a twisted minor beta sheet. Disulphide pairing, however, is not of the usual 1-3, 2-4, 5-6 type; rather 1-2, 3-4, 5-6 pairing is found. Its extended major sheet (strands beta-2 and beta-3 and the connecting loop) projects into thrombin's active site groove. This domain is required for interaction of thrombomodulin with thrombin, and subsequent activation of protein-C []. ; GO: 0004888 transmembrane signaling receptor activity, 0016021 integral to membrane
Probab=68.50 E-value=3 Score=27.29 Aligned_cols=19 Identities=21% Similarity=0.555 Sum_probs=13.9
Q ss_pred ccCCCCCCcCCCCCCCCcC
Q 008872 302 SCNSQKIPICSCLLGFEPK 320 (550)
Q Consensus 302 ~C~~~~~~~C~C~~gf~~~ 320 (550)
.|+.+....|.||.||-..
T Consensus 11 ~CDpn~~~~C~CPeGyIld 29 (34)
T PF09064_consen 11 DCDPNSPGQCFCPEGYILD 29 (34)
T ss_pred ccCCCCCCceeCCCceEec
Confidence 5665556689999999543
No 232
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=67.89 E-value=24 Score=34.72 Aligned_cols=47 Identities=23% Similarity=0.425 Sum_probs=36.3
Q ss_pred CCceEEEEeCCCCCCCCCC----ceEEE-eeCCcEEEEcCCccEEEeecccc
Q 008872 72 ANKTVVWVANRNKPLIDSS----GIFTI-SEDGNLVVLNGKKQVHWSSNVSS 118 (550)
Q Consensus 72 ~~~~~vW~anr~~p~~~~~----~~l~l-~~~G~L~l~~~~~~~~W~s~~~~ 118 (550)
.+.+..|.|.|..|+-.+. ..+.+ +-||+|.-.|+.|+.||+..+.+
T Consensus 167 ~~~~~~w~~~~~~PiF~splcv~~sv~i~~VdG~l~~f~~sG~qvwr~~t~G 218 (354)
T KOG4649|consen 167 YSSTEFWAATRFGPIFASPLCVGSSVIITTVDGVLTSFDESGRQVWRPATKG 218 (354)
T ss_pred CCcceehhhhcCCccccCceeccceEEEEEeccEEEEEcCCCcEEEeecCCC
Confidence 4568999999999987552 33333 56999999999999999876543
No 233
>KOG0669 consensus Cyclin T-dependent kinase CDK9 [Cell cycle control, cell division, chromosome partitioning]
Probab=67.07 E-value=0.58 Score=45.61 Aligned_cols=47 Identities=28% Similarity=0.506 Sum_probs=31.5
Q ss_pred ceeccCCCccEEEEEeCC-CCEEEEEEc--cccCCcCHHHHHHHHHHhhc
Q 008872 501 NKLGQGGFGPVYKGKLQD-GQEIAVKRL--SKASGQGQEEFMNEVMIHKD 547 (550)
Q Consensus 501 ~~LG~G~fG~VYKG~L~~-g~~VAVKrL--~~~s~~~~~eF~~Ev~~i~~ 547 (550)
++||+|.||.|||+.-.+ |+.||+|+. +.....-...=+.|++++-.
T Consensus 23 ~kigqGtfgeVFkAr~~n~~kkvalkkvlmeneKeGfpitalreikiL~~ 72 (376)
T KOG0669|consen 23 AKIGQGTFGEVFKARSKNTGKKVALKKVLMENEKEGFPITALREIKILQL 72 (376)
T ss_pred HhcCCchHHHHHHHhhcCccchhHHHHHHHhccccCCcHHHHHHHHHHHH
Confidence 689999999999998755 677899876 22111212334567776654
No 234
>PRK01723 3-deoxy-D-manno-octulosonic-acid kinase; Reviewed
Probab=67.03 E-value=10 Score=37.09 Aligned_cols=47 Identities=13% Similarity=0.232 Sum_probs=34.7
Q ss_pred ceec-cCCCccEEEEEeCCCCEEEEEEccccC-------------CcCHHHHHHHHHHhhcc
Q 008872 501 NKLG-QGGFGPVYKGKLQDGQEIAVKRLSKAS-------------GQGQEEFMNEVMIHKDK 548 (550)
Q Consensus 501 ~~LG-~G~fG~VYKG~L~~g~~VAVKrL~~~s-------------~~~~~eF~~Ev~~i~~l 548 (550)
.+|| .||.|+||+.... +..++||+.+... ......+..|+.++.+|
T Consensus 37 ~~lg~~~g~gtv~~v~~~-~~~~vlk~~~r~~~i~kv~~~~~~~~~~~~~r~~rE~~ll~~L 97 (239)
T PRK01723 37 RVVGSAKGRGTTWFVQTP-GVNWVLRHYRRGGLIGKLSKDRYLFTGLERTRAFAEFRLLAQL 97 (239)
T ss_pred ceeecCCCCccEEEEEeC-CceEEEEEeeEcchHHhhhhhcccccchhhhHHHHHHHHHHHH
Confidence 6898 9999999999885 6778998874311 11234578898888776
No 235
>KOG0983 consensus Mitogen-activated protein kinase (MAPK) kinase MKK7/JNKK2 [Signal transduction mechanisms]
Probab=66.84 E-value=10 Score=37.74 Aligned_cols=54 Identities=24% Similarity=0.499 Sum_probs=37.2
Q ss_pred cHHHHHHhhccccccceeccCCCccEEEEEeCC-CCEEEEEEcccc-CCcCHHHHHHHHHHhh
Q 008872 486 NFEELANATNNFQLANKLGQGGFGPVYKGKLQD-GQEIAVKRLSKA-SGQGQEEFMNEVMIHK 546 (550)
Q Consensus 486 s~~eL~~AT~~Fs~~~~LG~G~fG~VYKG~L~~-g~~VAVKrL~~~-s~~~~~eF~~Ev~~i~ 546 (550)
...||+.. ..||.|.-|.|.|..... |..+|||.+.+. +....+..+..+.++.
T Consensus 90 dindl~~l-------~dlGsGtcG~V~k~~~rs~~~iiAVK~M~rt~Nkee~kRILmDldvv~ 145 (391)
T KOG0983|consen 90 DINDLENL-------GDLGSGTCGQVWKMRFRSTGHIIAVKQMRRTGNKEENKRILMDLDVVL 145 (391)
T ss_pred ChHHhhhH-------HhhcCCCccceEEEEEcccceEEEEEeecccCCHHHHHHHHHhhhHHh
Confidence 44566644 579999999999998854 889999999643 2222344555666554
No 236
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=66.46 E-value=2.4 Score=49.53 Aligned_cols=59 Identities=25% Similarity=0.285 Sum_probs=42.0
Q ss_pred HHHHhhccccccceeccCCCccEEEEEeCC-CCEEEEEEcccc---CCcCHHHHHHHHHHhhc
Q 008872 489 ELANATNNFQLANKLGQGGFGPVYKGKLQD-GQEIAVKRLSKA---SGQGQEEFMNEVMIHKD 547 (550)
Q Consensus 489 eL~~AT~~Fs~~~~LG~G~fG~VYKG~L~~-g~~VAVKrL~~~---s~~~~~eF~~Ev~~i~~ 547 (550)
++..-.++|..-.+||+|+||.|.-..+.. +++.|.|+|.+. ......-|+.|=.+|+-
T Consensus 69 ~lrl~~~DfeilKvIGrGaFGEV~lVr~k~t~~VYAMK~lnK~eMlKr~~tA~F~EERDimv~ 131 (1317)
T KOG0612|consen 69 ELRLKAEDFEILKVIGRGAFGEVALVRHKSTEKVYAMKILNKWEMLKRAETACFREERDIMVF 131 (1317)
T ss_pred HHhCCHHhhHHHHHhcccccceeEEEEeeccccchhHHHhhHHHHhhchhHHHHHHHhHHHHc
Confidence 333334456656899999999999888854 678899999652 23334568888877763
No 237
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=66.39 E-value=2 Score=28.86 Aligned_cols=18 Identities=50% Similarity=1.082 Sum_probs=7.4
Q ss_pred EEEeehhhHHHHHHHHHH
Q 008872 423 IILSVIVGIIAIAICTFF 440 (550)
Q Consensus 423 i~i~v~~~~lvl~~~~~~ 440 (550)
++++++++++++++.+++
T Consensus 8 IIv~V~vg~~iiii~~~~ 25 (38)
T PF02439_consen 8 IIVAVVVGMAIIIICMFY 25 (38)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444443333
No 238
>COG2112 Predicted Ser/Thr protein kinase [Signal transduction mechanisms]
Probab=65.96 E-value=9.3 Score=35.71 Aligned_cols=44 Identities=23% Similarity=0.326 Sum_probs=32.5
Q ss_pred ceeccCCCccEEEEEeCCCCEEEEEEccccCCcCHHHHHHHHHHhhc
Q 008872 501 NKLGQGGFGPVYKGKLQDGQEIAVKRLSKASGQGQEEFMNEVMIHKD 547 (550)
Q Consensus 501 ~~LG~G~fG~VYKG~L~~g~~VAVKrL~~~s~~~~~eF~~Ev~~i~~ 547 (550)
..|++|.+|.||.|...+ ..+|+|.=... .-...+..|++++-.
T Consensus 28 ~~L~KG~~s~Vyl~~~~~-~~~a~Kvrr~d--s~r~~l~kEakiLei 71 (201)
T COG2112 28 KELAKGTTSVVYLGEWRG-GEVALKVRRRD--SPRRNLEKEAKILEI 71 (201)
T ss_pred hhhhcccccEEEEeeccC-ceEEEEEecCC--cchhhHHHHHHHHHH
Confidence 789999999999999854 47888875432 235568888776543
No 239
>KOG0616 consensus cAMP-dependent protein kinase catalytic subunit (PKA) [Signal transduction mechanisms]
Probab=65.71 E-value=4.8 Score=40.34 Aligned_cols=50 Identities=30% Similarity=0.299 Sum_probs=36.7
Q ss_pred cceeccCCCccEEEEEe-CCCCEEEEEEccccC---CcCHHHHHHHHHHhhccc
Q 008872 500 ANKLGQGGFGPVYKGKL-QDGQEIAVKRLSKAS---GQGQEEFMNEVMIHKDKV 549 (550)
Q Consensus 500 ~~~LG~G~fG~VYKG~L-~~g~~VAVKrL~~~s---~~~~~eF~~Ev~~i~~l~ 549 (550)
-..||.|+||.|.-... .+|...|.|.|++.. ....+.-.+|-.+|..+.
T Consensus 49 ~~tlGtGSFGrV~LVr~k~~g~yYAmKvL~k~~vVklKQveH~~nEk~vL~~v~ 102 (355)
T KOG0616|consen 49 LKTLGTGSFGRVHLVREKHSGNYYAMKVLDKQKVVKLKQVEHTHNEKRVLKAVS 102 (355)
T ss_pred eeeeccCccceEEEEEEccCCceeehhhcCHHHHHHHHHHHHHhhHHHHHhhcc
Confidence 37899999999998776 458889999996432 122345677888877664
No 240
>PF00008 EGF: EGF-like domain This is a sub-family of the Pfam entry This is a sub-family of the Pfam entry; InterPro: IPR006209 A sequence of about thirty to forty amino-acid residues long found in the sequence of epidermal growth factor (EGF) has been shown [, , , , ] to be present, in a more or less conserved form, in a large number of other, mostly animal proteins. The list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied. The functional significance of EGF domains in what appear to be unrelated proteins is not yet clear. However, a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase). The EGF domain includes six cysteine residues which have been shown (in EGF) to be involved in disulphide bonds. The main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet. Subdomains between the conserved cysteines vary in length.; GO: 0005515 protein binding; PDB: 1WHE_A 1CCF_A 1APO_A 1WHF_A 2VJ3_A 1TOZ_A 4D90_B 3CFW_A 1EDM_B 1IXA_A ....
Probab=65.59 E-value=1.3 Score=28.61 Aligned_cols=25 Identities=28% Similarity=0.587 Sum_probs=18.8
Q ss_pred ccCCCcccCC-C-CCCcCCCCCCCCcC
Q 008872 296 KCGAFGSCNS-Q-KIPICSCLLGFEPK 320 (550)
Q Consensus 296 ~CG~~g~C~~-~-~~~~C~C~~gf~~~ 320 (550)
.|...|.|.. . ..+.|.|++||+..
T Consensus 5 ~C~n~g~C~~~~~~~y~C~C~~G~~G~ 31 (32)
T PF00008_consen 5 PCQNGGTCIDLPGGGYTCECPPGYTGK 31 (32)
T ss_dssp SSTTTEEEEEESTSEEEEEEBTTEEST
T ss_pred cCCCCeEEEeCCCCCEEeECCCCCccC
Confidence 6777788863 2 56789999999753
No 241
>PF00024 PAN_1: PAN domain This Prosite entry concerns apple domains, a subset of PAN domains; InterPro: IPR003014 PAN domains have significant functional versatility fulfilling diverse biological functions by mediating protein-protein or protein-carbohydrate interactions []. These domains contain a hair-pin loop like structure, similar to knottins, but the pattern of disulphide bonds differs It has been shown that, the N-terminal N domains of members of the plasminogen/hepatocyte growth factor family, the apple domains of the plasma prekallikrein/coagulation factor XI family, and domains of various nematode proteins belong to the same module superfamily, the PAN module []. PAN contains a conserved core of three disulphide bridges. In some members of the family there is an additional fourth disulphide bridge that links the N and C termini of the domain.; PDB: 1GP9_C 2QJ2_B 1GMO_H 1NK1_B 3MKP_B 1BHT_B 3HN4_A 1GMN_A 3HMS_A 3HMT_B ....
Probab=64.67 E-value=4.4 Score=31.50 Aligned_cols=32 Identities=22% Similarity=0.670 Sum_probs=26.2
Q ss_pred chhhHHhhccCCCc-eEeEeccCCc-ceeeeecc
Q 008872 360 NEDKCKDQCSNNCS-CKAYAYEIGV-GCMIWTHN 391 (550)
Q Consensus 360 ~~~~C~~~Cl~nCs-C~a~~~~~g~-~C~~~~~~ 391 (550)
++++|...|+.+-. |.++.|.... .|.+....
T Consensus 24 s~~~C~~~C~~~~~~C~s~~y~~~~~~C~L~~~~ 57 (79)
T PF00024_consen 24 SLEECAQLCLNEPRRCKSFNYDPSSKTCYLSSSD 57 (79)
T ss_dssp SHHHHHHHHHHSTT-ESEEEEETTTTEEEEECSS
T ss_pred CHHHHHhhcCcCcccCCeEEEECCCCEEEEcCCC
Confidence 78999999999999 9999997543 49875543
No 242
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=63.91 E-value=51 Score=31.35 Aligned_cols=78 Identities=26% Similarity=0.357 Sum_probs=47.2
Q ss_pred CCceEEEEeCCCCCCCCC----CceE-EEeeCCcEEEEc-CCccEEEee-ccccC-c---CC------CCceEEEecCCC
Q 008872 72 ANKTVVWVANRNKPLIDS----SGIF-TISEDGNLVVLN-GKKQVHWSS-NVSSL-A---NN------SNTRAQLLDSGN 134 (550)
Q Consensus 72 ~~~~~vW~anr~~p~~~~----~~~l-~l~~~G~L~l~~-~~~~~~W~s-~~~~~-~---~~------~~~~~~l~d~GN 134 (550)
...+++|...-+.++... +..+ ..+.+|.|+..| .+|.++|+. ..... . .. +...+....+|.
T Consensus 54 ~tG~~~W~~~~~~~~~~~~~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 133 (238)
T PF13360_consen 54 KTGKVLWRFDLPGPISGAPVVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGK 133 (238)
T ss_dssp TTSEEEEEEECSSCGGSGEEEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSE
T ss_pred CCCCEEEEeeccccccceeeecccccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCc
Confidence 467899998876654322 2344 344567788888 679999994 32210 0 00 011223334888
Q ss_pred eEEEeCCCCceeeee
Q 008872 135 LVLHDNISQVSIWDS 149 (550)
Q Consensus 135 lvl~~~~~~~~~WqS 149 (550)
|+..|..++.++|+-
T Consensus 134 l~~~d~~tG~~~w~~ 148 (238)
T PF13360_consen 134 LVALDPKTGKLLWKY 148 (238)
T ss_dssp EEEEETTTTEEEEEE
T ss_pred EEEEecCCCcEEEEe
Confidence 888887668888875
No 243
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=63.27 E-value=2.3 Score=36.89 Aligned_cols=12 Identities=50% Similarity=0.960 Sum_probs=5.1
Q ss_pred EEEeehhhHHHH
Q 008872 423 IILSVIVGIIAI 434 (550)
Q Consensus 423 i~i~v~~~~lvl 434 (550)
|+++++++++++
T Consensus 69 Ii~gv~aGvIg~ 80 (122)
T PF01102_consen 69 IIFGVMAGVIGI 80 (122)
T ss_dssp HHHHHHHHHHHH
T ss_pred hhHHHHHHHHHH
Confidence 334444444433
No 244
>smart00223 APPLE APPLE domain. Four-fold repeat in plasma kallikrein and coagulation factor XI. Factor XI apple 3 mediates binding to platelets. Factor XI apple 1 binds high-molecular-mass kininogen. Apple 4 in factor XI mediates dimer formation and binds to factor XIIa. Mutations in apple 4 cause factor XI deficiency, an inherited bleeding disorder.
Probab=63.24 E-value=8 Score=30.85 Aligned_cols=30 Identities=13% Similarity=0.604 Sum_probs=24.2
Q ss_pred chhhHHhhccCCCceEeEeccC-Cc---ceeeee
Q 008872 360 NEDKCKDQCSNNCSCKAYAYEI-GV---GCMIWT 389 (550)
Q Consensus 360 ~~~~C~~~Cl~nCsC~a~~~~~-g~---~C~~~~ 389 (550)
+.++|++.|..+=.|.+|.|.. .. .|++..
T Consensus 23 ~~~~Cq~~Ct~~~~C~~FTf~~~~~~~~~C~LK~ 56 (79)
T smart00223 23 SAQVCQKRCTSHPRCLFFTFSTNEPPEEKCLLKD 56 (79)
T ss_pred CHHHHHHhhcCCCCccEEEeeCCCCCCCEeEeCc
Confidence 6899999999999999999964 22 587643
No 245
>KOG1214 consensus Nidogen and related basement membrane protein proteins [Cell wall/membrane/envelope biogenesis; Extracellular structures]
Probab=62.69 E-value=4.8 Score=45.27 Aligned_cols=64 Identities=19% Similarity=0.363 Sum_probs=37.6
Q ss_pred EEEecCCCeEE-----EEEeCCCCceEE-EEeecCCCCccc-cccCCCcccC--C--CCCCcCCCCCCCCcCCcc
Q 008872 260 FALTPQGNLEE-----RAWVDGKAHLKI-YFFYPTNDCDVY-GKCGAFGSCN--S--QKIPICSCLLGFEPKNAE 323 (550)
Q Consensus 260 ~~l~~~G~l~~-----y~~~~~~~~W~~-~~~~p~~~C~~~-~~CG~~g~C~--~--~~~~~C~C~~gf~~~~~~ 323 (550)
.-++.+|+.|. |.+.++...=.. .=.+|.+.|.-- ..|-.+|-|. . .+.+.|+|+|||......
T Consensus 749 ~Cin~pg~~rceC~~gy~F~dd~~tCV~i~~pap~n~Ce~g~h~C~i~g~a~c~~hGgs~y~C~CLPGfsGDG~~ 823 (1289)
T KOG1214|consen 749 VCINLPGSYRCECRSGYEFADDRHTCVLITPPAPANPCEDGSHTCAIAGQARCVHHGGSTYSCACLPGFSGDGHQ 823 (1289)
T ss_pred eeecCCCceeEEEeecceeccCCcceEEecCCCCCCccccCccccCcCCceEEEecCCceEEEeecCCccCCccc
Confidence 44556677653 344443222111 122466778765 5687777763 2 346789999999876543
No 246
>KOG0666 consensus Cyclin C-dependent kinase CDK8 [Transcription]
Probab=62.25 E-value=4.8 Score=40.66 Aligned_cols=47 Identities=26% Similarity=0.533 Sum_probs=30.3
Q ss_pred ceeccCCCccEEEEEeCC---CC--EEEEEEccccCCc-C-HHHHHHHHHHhhc
Q 008872 501 NKLGQGGFGPVYKGKLQD---GQ--EIAVKRLSKASGQ-G-QEEFMNEVMIHKD 547 (550)
Q Consensus 501 ~~LG~G~fG~VYKG~L~~---g~--~VAVKrL~~~s~~-~-~~eF~~Ev~~i~~ 547 (550)
..||+|.+|.|||++-.+ .+ .+|||+++....+ + ...-..|+.++-.
T Consensus 30 g~Ig~GTYG~VykA~~~~~n~kr~k~yAiKkfk~~kd~tGiS~SAcREiaL~RE 83 (438)
T KOG0666|consen 30 GKIGRGTYGKVYKAVRKNTNDKRTKEYAIKKFKGEKDGTGISMSACREIALLRE 83 (438)
T ss_pred ceecccccceeeEeeeccCCcccchhhHHHHHhccCCCCCcCHHHHHHHHHHHH
Confidence 679999999999996533 23 7899999643211 1 2344555555443
No 247
>KOG0587 consensus Traf2- and Nck-interacting kinase and related germinal center kinase (GCK) family protein kinases [Signal transduction mechanisms]
Probab=60.42 E-value=9.9 Score=43.46 Aligned_cols=59 Identities=29% Similarity=0.516 Sum_probs=42.1
Q ss_pred HHHHHhhccccccceeccCCCccEEEEEe-CCCCEEEEEEccccCCcCHHHHHHHHHHhhc
Q 008872 488 EELANATNNFQLANKLGQGGFGPVYKGKL-QDGQEIAVKRLSKASGQGQEEFMNEVMIHKD 547 (550)
Q Consensus 488 ~eL~~AT~~Fs~~~~LG~G~fG~VYKG~L-~~g~~VAVKrL~~~s~~~~~eF~~Ev~~i~~ 547 (550)
+.+...++-|-...+||.|-+|.|||+.= .+|+.+|||.+.-. ....+|-+.|-.++-.
T Consensus 12 ~~lpdp~d~~ei~evig~Gtygkv~k~k~~~~~~~aa~kI~~~~-~d~deEiE~eynil~~ 71 (953)
T KOG0587|consen 12 SSLPDPADIFEIIEVIGNGTYGKVYKGRHVKTGQLAAIKIMDPT-EDEEEEIELEYNMLKK 71 (953)
T ss_pred hhCCCCCCccEEEEEEeeccceeEEEEeeeecCceeeeEeecCC-ccccHHHHHHHHHHHh
Confidence 33334455555568999999999999864 67899999998643 4456677777766643
No 248
>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=59.92 E-value=3.9 Score=42.68 Aligned_cols=41 Identities=32% Similarity=0.481 Sum_probs=29.7
Q ss_pred HHHHHhhccccccceeccCCCccEEEEEeCC-CCEEEEEEccc
Q 008872 488 EELANATNNFQLANKLGQGGFGPVYKGKLQD-GQEIAVKRLSK 529 (550)
Q Consensus 488 ~eL~~AT~~Fs~~~~LG~G~fG~VYKG~L~~-g~~VAVKrL~~ 529 (550)
.+..+||+ |+--.+||+|+||.|..++-.. .+..|||.|++
T Consensus 343 ~d~i~~tD-FnFl~VlGKGSFGKVlLaerkgtdELyAiKiLkK 384 (683)
T KOG0696|consen 343 RDRIKATD-FNFLMVLGKGSFGKVLLAERKGTDELYAIKILKK 384 (683)
T ss_pred ccceeecc-cceEEEeccCccceeeeecccCcchhhhhhhhcc
Confidence 34445554 5545899999999999887644 35689999964
No 249
>smart00181 EGF Epidermal growth factor-like domain.
Probab=59.88 E-value=6.7 Score=25.30 Aligned_cols=24 Identities=29% Similarity=0.660 Sum_probs=17.9
Q ss_pred cccCCCcccCCC-CCCcCCCCCCCCc
Q 008872 295 GKCGAFGSCNSQ-KIPICSCLLGFEP 319 (550)
Q Consensus 295 ~~CG~~g~C~~~-~~~~C~C~~gf~~ 319 (550)
..|... .|... +...|.|++||+.
T Consensus 6 ~~C~~~-~C~~~~~~~~C~C~~g~~g 30 (35)
T smart00181 6 GPCSNG-TCINTPGSYTCSCPPGYTG 30 (35)
T ss_pred CCCCCC-EEECCCCCeEeECCCCCcc
Confidence 456666 78643 5678999999976
No 250
>KOG0670 consensus U4/U6-associated splicing factor PRP4 [RNA processing and modification]
Probab=59.39 E-value=8.4 Score=41.58 Aligned_cols=47 Identities=28% Similarity=0.337 Sum_probs=35.4
Q ss_pred eeccCCCccEEEEEeC-CCCEEEEEEccccCCcCHHHHHHHHHHhhccc
Q 008872 502 KLGQGGFGPVYKGKLQ-DGQEIAVKRLSKASGQGQEEFMNEVMIHKDKV 549 (550)
Q Consensus 502 ~LG~G~fG~VYKG~L~-~g~~VAVKrL~~~s~~~~~eF~~Ev~~i~~l~ 549 (550)
-.|+|-|++|.+|.=. -|++||||.+... ....+.=+.|+++|-+|.
T Consensus 439 ~~GkGvFs~Vvra~D~~r~~~vAiKIIRnN-E~M~KtGl~EleiLkKL~ 486 (752)
T KOG0670|consen 439 YTGKGVFSTVVRARDQARGQEVAIKIIRNN-EVMHKTGLKELEILKKLN 486 (752)
T ss_pred ccccceeeeeeeccccCCCCeeEEEEeecc-hHHhhhhhHHHHHHHHhh
Confidence 4689999999999653 3789999999643 444556678888888764
No 251
>PF15102 TMEM154: TMEM154 protein family
Probab=59.15 E-value=3.8 Score=36.46 Aligned_cols=8 Identities=38% Similarity=0.634 Sum_probs=4.0
Q ss_pred ccHHHHHH
Q 008872 485 FNFEELAN 492 (550)
Q Consensus 485 fs~~eL~~ 492 (550)
+..+||.+
T Consensus 125 iEmeeldk 132 (146)
T PF15102_consen 125 IEMEELDK 132 (146)
T ss_pred hhHHHHHh
Confidence 45555543
No 252
>PF14531 Kinase-like: Kinase-like; PDB: 3DZO_A 2W1Z_A 3BYV_A 3Q5Z_A 3Q60_A.
Probab=59.01 E-value=14 Score=37.30 Aligned_cols=49 Identities=29% Similarity=0.392 Sum_probs=38.0
Q ss_pred ccceeccCCCccEEEEEeCC-CCEEEEEEcc---ccCCcCHHHHHHHHHHhhc
Q 008872 499 LANKLGQGGFGPVYKGKLQD-GQEIAVKRLS---KASGQGQEEFMNEVMIHKD 547 (550)
Q Consensus 499 ~~~~LG~G~fG~VYKG~L~~-g~~VAVKrL~---~~s~~~~~eF~~Ev~~i~~ 547 (550)
....||.|+++.||.++-.+ |+.+|||..- ..+....+++++|.-.+..
T Consensus 16 ~~~~i~~g~~~~v~~v~d~~t~~~~avkvf~~~~~~~~~~~~~~~~e~l~~~~ 68 (288)
T PF14531_consen 16 RGRIIGKGGFSIVFEVTDVETGEEFAVKVFLLPADASANEYEQLKEEQLAITL 68 (288)
T ss_dssp EEEEEEEETTEEEEEEEETTTTEEEEEEEEEESSTTHTTHHHHHHHHHHGGGG
T ss_pred EccccccCCceEEEEEEEccCCceEEEEEEecccccchHHHHHHHHHHHHhhh
Confidence 34799999999999999866 8899999872 2233446789998877655
No 253
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=58.95 E-value=25 Score=37.02 Aligned_cols=61 Identities=11% Similarity=0.152 Sum_probs=36.7
Q ss_pred ceEEE-eeCCcEEEEcC-CccEEEeeccccCc-----------CC-----CCceEEEecCCCeEEEeCCCCceeeeecCC
Q 008872 91 GIFTI-SEDGNLVVLNG-KKQVHWSSNVSSLA-----------NN-----SNTRAQLLDSGNLVLHDNISQVSIWDSFQE 152 (550)
Q Consensus 91 ~~l~l-~~~G~L~l~~~-~~~~~W~s~~~~~~-----------~~-----~~~~~~l~d~GNlvl~~~~~~~~~WqSFd~ 152 (550)
..+.+ +.+|.|+-+|. +|.++|+.+..... .. ......-..+|+|+-.|..+++++|+ ++-
T Consensus 70 ~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~~g~l~ald~~tG~~~W~-~~~ 148 (394)
T PRK11138 70 NKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSEKGQVYALNAEDGEVAWQ-TKV 148 (394)
T ss_pred CEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcCCCEEEEEECCCCCCccc-ccC
Confidence 34444 34577777775 58999997654300 00 01122234678888888777889996 443
No 254
>cd05120 APH_ChoK_like Aminoglycoside 3'-phosphotransferase (APH) and Choline Kinase (ChoK) family. The APH/ChoK family is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). The family is composed of APH, ChoK, ethanolamine kinase (ETNK), macrolide 2'-phosphotransferase (MPH2'), an unusual homoserine kinase, and uncharacterized proteins with similarity to the N-terminal domain of acyl-CoA dehydrogenase 10 (ACAD10). The members of this family catalyze the transfer of the gamma-phosphoryl group from ATP (or CTP) to small molecule substrates such as aminoglycosides, macrolides, choline, ethanolamine, and homoserine. Phosphorylation of the antibiotics, aminoglycosides and macrolides, leads to their inactivation and to bacterial antibiotic resistance. Phosphorylation of choline, ethanolamine, and homoserine serves
Probab=57.40 E-value=21 Score=30.61 Aligned_cols=29 Identities=21% Similarity=0.139 Sum_probs=24.5
Q ss_pred ceeccCCCccEEEEEeCCCCEEEEEEcccc
Q 008872 501 NKLGQGGFGPVYKGKLQDGQEIAVKRLSKA 530 (550)
Q Consensus 501 ~~LG~G~fG~VYKG~L~~g~~VAVKrL~~~ 530 (550)
+.||+|.++.||++...+ ..++||.....
T Consensus 4 ~~i~~g~~~~v~~~~~~~-~~~~iK~~~~~ 32 (155)
T cd05120 4 KLLKGGLTNRVYLLGTKD-EDYVLKINPSR 32 (155)
T ss_pred eecccccccceEEEEecC-CeEEEEecCCC
Confidence 679999999999999855 78999998543
No 255
>KOG1219 consensus Uncharacterized conserved protein, contains laminin, cadherin and EGF domains [Signal transduction mechanisms]
Probab=56.86 E-value=12 Score=46.99 Aligned_cols=26 Identities=27% Similarity=0.576 Sum_probs=16.5
Q ss_pred cccCCCcccCC-CCCCcCCCCCCCCcC
Q 008872 295 GKCGAFGSCNS-QKIPICSCLLGFEPK 320 (550)
Q Consensus 295 ~~CG~~g~C~~-~~~~~C~C~~gf~~~ 320 (550)
..|--.|-|.. .+...|+||.||.++
T Consensus 3909 nPC~~GgtCip~~n~f~CnC~~gyTG~ 3935 (4289)
T KOG1219|consen 3909 NPCLTGGTCIPFYNGFLCNCPNGYTGK 3935 (4289)
T ss_pred CCCCCCCEEEecCCCeeEeCCCCccCc
Confidence 44555566653 345678888888765
No 256
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=56.76 E-value=46 Score=31.61 Aligned_cols=78 Identities=19% Similarity=0.364 Sum_probs=46.6
Q ss_pred CCceEEEEeCC----CCCC---CCCCceEEE-eeCCcEEEEcC-CccEEEeeccccCcC-----CCCceEEEecCCCeEE
Q 008872 72 ANKTVVWVANR----NKPL---IDSSGIFTI-SEDGNLVVLNG-KKQVHWSSNVSSLAN-----NSNTRAQLLDSGNLVL 137 (550)
Q Consensus 72 ~~~~~vW~anr----~~p~---~~~~~~l~l-~~~G~L~l~~~-~~~~~W~s~~~~~~~-----~~~~~~~l~d~GNlvl 137 (550)
.....+|..+- +.++ ...+..+.+ +.+|.|+..|. +|..+|+........ ..........+|.|+.
T Consensus 11 ~tG~~~W~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~v~v~~~~~~l~~ 90 (238)
T PF13360_consen 11 RTGKELWSYDLGPGIGGPVATAVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAPVVDGGRVYVGTSDGSLYA 90 (238)
T ss_dssp TTTEEEEEEECSSSCSSEEETEEEETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGEEEETTEEEEEETTSEEEE
T ss_pred CCCCEEEEEECCCCCCCccceEEEeCCEEEEEcCCCEEEEEECCCCCEEEEeeccccccceeeecccccccccceeeeEe
Confidence 46678888753 2222 001234444 47899999996 799999987533210 0122233334566777
Q ss_pred EeCCCCceeeee
Q 008872 138 HDNISQVSIWDS 149 (550)
Q Consensus 138 ~~~~~~~~~WqS 149 (550)
.|..++.++|+.
T Consensus 91 ~d~~tG~~~W~~ 102 (238)
T PF13360_consen 91 LDAKTGKVLWSI 102 (238)
T ss_dssp EETTTSCEEEEE
T ss_pred cccCCcceeeee
Confidence 785568899995
No 257
>PF13095 FTA2: Kinetochore Sim4 complex subunit FTA2
Probab=56.30 E-value=18 Score=34.47 Aligned_cols=64 Identities=22% Similarity=0.282 Sum_probs=43.0
Q ss_pred CCcccccHHHHHHhhccccccceeccCCC-ccEEEEEeCCCCEEEEEEccc---cC------Cc------------CHHH
Q 008872 480 QDLLVFNFEELANATNNFQLANKLGQGGF-GPVYKGKLQDGQEIAVKRLSK---AS------GQ------------GQEE 537 (550)
Q Consensus 480 ~~~~~fs~~eL~~AT~~Fs~~~~LG~G~f-G~VYKG~L~~g~~VAVKrL~~---~s------~~------------~~~e 537 (550)
+.+..|++.. ..|.--+.||+|.. |.|||..+ +|+..|+|.... .. .. ...-
T Consensus 27 PKL~~F~~h~-----~~I~flefLg~g~~~~~V~kv~I-~g~~YALKlf~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~P 100 (207)
T PF13095_consen 27 PKLEPFTHHG-----DDIEFLEFLGHGSHDGYVFKVEI-DGRIYALKLFRFWDYTEPDYTRERFAGHETSLSTPAHYADP 100 (207)
T ss_pred CCcCCcCCCC-----CcEeeeeecCCCCceeEEEEEEE-CCeEEEEEEeeccccCCCccccccccccccccchhhhhcCh
Confidence 3445566621 34444488999999 99999999 678999998211 00 01 1135
Q ss_pred HHHHHHHhhccc
Q 008872 538 FMNEVMIHKDKV 549 (550)
Q Consensus 538 F~~Ev~~i~~l~ 549 (550)
|..|.+..|||.
T Consensus 101 F~~ECRAfgRLk 112 (207)
T PF13095_consen 101 FNCECRAFGRLK 112 (207)
T ss_pred HHHHHHhhHHHH
Confidence 889999988863
No 258
>PF14575 EphA2_TM: Ephrin type-A receptor 2 transmembrane domain; PDB: 3KUL_A 2XVD_A 2VX1_A 2VWV_A 2VX0_A 2VWY_A 2VWZ_A 2VWW_A 2VWU_A 2VWX_A ....
Probab=53.95 E-value=3.2 Score=32.76 Aligned_cols=15 Identities=20% Similarity=0.412 Sum_probs=13.1
Q ss_pred cccHHHHHHhhcccc
Q 008872 484 VFNFEELANATNNFQ 498 (550)
Q Consensus 484 ~fs~~eL~~AT~~Fs 498 (550)
.++|||-..|-..|.
T Consensus 56 P~TYEDP~qAV~eFA 70 (75)
T PF14575_consen 56 PHTYEDPNQAVREFA 70 (75)
T ss_dssp GGGSSSHHHHHHHCS
T ss_pred cccccCHHHHHHHHH
Confidence 578999999988887
No 259
>KOG1235 consensus Predicted unusual protein kinase [General function prediction only]
Probab=53.33 E-value=23 Score=38.97 Aligned_cols=32 Identities=22% Similarity=0.487 Sum_probs=27.3
Q ss_pred cccccceeccCCCccEEEEEeCCCCEEEEEEcc
Q 008872 496 NFQLANKLGQGGFGPVYKGKLQDGQEIAVKRLS 528 (550)
Q Consensus 496 ~Fs~~~~LG~G~fG~VYKG~L~~g~~VAVKrL~ 528 (550)
.|++ +-|+.-+.|.|||++|++|+.||||.-+
T Consensus 163 ~f~~-~piaaASlaQVhrA~L~~G~~VaVKVQ~ 194 (538)
T KOG1235|consen 163 EFDE-EPIAAASLAQVHRARLKNGEDVAVKVQH 194 (538)
T ss_pred hcCc-chhhhcchhheEEEEecCCCEEEEEecC
Confidence 3543 5688899999999999999999999864
No 260
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=53.20 E-value=44 Score=34.70 Aligned_cols=57 Identities=14% Similarity=0.280 Sum_probs=34.9
Q ss_pred eEEEe-eCCcEEEEc-CCccEEEeeccccCcCC-----CCceEEEecCCCeEEEeCCCCceeee
Q 008872 92 IFTIS-EDGNLVVLN-GKKQVHWSSNVSSLANN-----SNTRAQLLDSGNLVLHDNISQVSIWD 148 (550)
Q Consensus 92 ~l~l~-~~G~L~l~~-~~~~~~W~s~~~~~~~~-----~~~~~~l~d~GNlvl~~~~~~~~~Wq 148 (550)
.+.+. .+|.|+-.| .+|.++|+.+....... ......-..+|+|+..|..++.++|+
T Consensus 67 ~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v~~~~v~v~~~~g~l~ald~~tG~~~W~ 130 (377)
T TIGR03300 67 KVYAADADGTVVALDAETGKRLWRVDLDERLSGGVGADGGLVFVGTEKGEVIALDAEDGKELWR 130 (377)
T ss_pred EEEEECCCCeEEEEEccCCcEeeeecCCCCcccceEEcCCEEEEEcCCCEEEEEECCCCcEeee
Confidence 44443 457888888 47899998765432100 11222334577888888766888997
No 261
>KOG1290 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=51.62 E-value=18 Score=38.88 Aligned_cols=50 Identities=24% Similarity=0.315 Sum_probs=37.4
Q ss_pred ccceeccCCCccEEEEEe-CCCCEEEEEEccccCCcCHHHHHHHHHHhhccc
Q 008872 499 LANKLGQGGFGPVYKGKL-QDGQEIAVKRLSKASGQGQEEFMNEVMIHKDKV 549 (550)
Q Consensus 499 ~~~~LG~G~fG~VYKG~L-~~g~~VAVKrL~~~s~~~~~eF~~Ev~~i~~l~ 549 (550)
-..+||=|.|.||+.+-= .+.+-||+|..+.. .+-.+.=+.|++++.++.
T Consensus 82 v~rKLGWGHFSTVWLawDtq~~r~VAlKVvKSA-qhYtEaAlDEIklL~~v~ 132 (590)
T KOG1290|consen 82 VQRKLGWGHFSTVWLAWDTQNKRYVALKVVKSA-QHYTEAALDEIKLLQQVR 132 (590)
T ss_pred EEEeccccccceeEEEeeccCCeEEEEEEEehh-hHHHHHHHHHHHHHHHHH
Confidence 347999999999998742 46789999998532 333455788999988764
No 262
>KOG1152 consensus Signal transduction serine/threonine kinase with PAS/PAC sensor domain [Signal transduction mechanisms]
Probab=50.70 E-value=13 Score=40.74 Aligned_cols=53 Identities=19% Similarity=0.266 Sum_probs=36.1
Q ss_pred ccccceeccCCCccEEEEEeCC-CCEEEEEEccccCC--------cCHHHHHHHHHHhhccc
Q 008872 497 FQLANKLGQGGFGPVYKGKLQD-GQEIAVKRLSKASG--------QGQEEFMNEVMIHKDKV 549 (550)
Q Consensus 497 Fs~~~~LG~G~fG~VYKG~L~~-g~~VAVKrL~~~s~--------~~~~eF~~Ev~~i~~l~ 549 (550)
|..-+.+|+|+||.|.-++-.. .-+|.||.+.+..- ...--.-.|+.||+.|.
T Consensus 563 yttlq~lG~GAyGkV~lai~K~n~~eVViK~I~KeRIL~DtWvrDrkLGtVp~EIqIla~l~ 624 (772)
T KOG1152|consen 563 YTTLQPLGEGAYGKVNLAIHKENNYEVVIKMIFKERILVDTWVRDRKLGTVPSEIQILATLN 624 (772)
T ss_pred ceeeeeccccccceEEEeeecccceEEEeeehhhhhhhhhhhhcccccCccchhHHHHHHhh
Confidence 5667899999999999998854 45788898743210 11112456788888763
No 263
>KOG4258 consensus Insulin/growth factor receptor (contains protein kinase domain) [Signal transduction mechanisms]
Probab=50.04 E-value=6.7 Score=44.48 Aligned_cols=31 Identities=35% Similarity=0.613 Sum_probs=23.2
Q ss_pred cHHHHHHhhccccccceeccCCCccEEEEEeC
Q 008872 486 NFEELANATNNFQLANKLGQGGFGPVYKGKLQ 517 (550)
Q Consensus 486 s~~eL~~AT~~Fs~~~~LG~G~fG~VYKG~L~ 517 (550)
--+|.+.+.+ ....+.||+|+||+||.|.-.
T Consensus 986 v~deWe~~r~-it~~relg~gsfg~Vy~g~~n 1016 (1025)
T KOG4258|consen 986 VPDEWEVSRE-ITLGRELGQGSFGMVYEGNAN 1016 (1025)
T ss_pred ChhHHHHHHH-HhhhhhhccCccceEEEecCC
Confidence 3456666555 556689999999999999753
No 264
>KOG1151 consensus Tousled-like protein kinase [Signal transduction mechanisms]
Probab=49.87 E-value=3.5 Score=43.43 Aligned_cols=27 Identities=44% Similarity=0.682 Sum_probs=22.5
Q ss_pred ceeccCCCccEEEEE-eCCCCEEEEEEc
Q 008872 501 NKLGQGGFGPVYKGK-LQDGQEIAVKRL 527 (550)
Q Consensus 501 ~~LG~G~fG~VYKG~-L~~g~~VAVKrL 527 (550)
++||+|||..|||+- |...+-||||.-
T Consensus 469 hLLGrGGFSEVyKAFDl~EqRYvAvKIH 496 (775)
T KOG1151|consen 469 HLLGRGGFSEVYKAFDLTEQRYVAVKIH 496 (775)
T ss_pred HHhccccHHHHHHhcccchhheeeEeee
Confidence 789999999999994 345678999975
No 265
>KOG0584 consensus Serine/threonine protein kinase [General function prediction only]
Probab=49.74 E-value=5.8 Score=43.53 Aligned_cols=48 Identities=31% Similarity=0.463 Sum_probs=32.5
Q ss_pred ceeccCCCccEEEEEeC-CCCEEEE--EEcccc--CCcCHHHHHHHHHHhhcc
Q 008872 501 NKLGQGGFGPVYKGKLQ-DGQEIAV--KRLSKA--SGQGQEEFMNEVMIHKDK 548 (550)
Q Consensus 501 ~~LG~G~fG~VYKG~L~-~g~~VAV--KrL~~~--s~~~~~eF~~Ev~~i~~l 548 (550)
.+||+|+|=+||||.=. .|.+||= ++++.. +....+.|..||.++..|
T Consensus 46 evLGrGafKtVYka~De~~giEVAWnqvk~~d~~q~~~~leR~~~Ev~lLKsL 98 (632)
T KOG0584|consen 46 EVLGRGAFKTVYKAFDEEEGIEVAWNQVKIRDVTQSPEELERLYSEVHLLKSL 98 (632)
T ss_pred hhcccccceeeeeccccccchhhHHHHHhHHHhhcChHHHHHHHHHHHHHccC
Confidence 79999999999999642 2555552 223222 223346799999999765
No 266
>PF14295 PAN_4: PAN domain; PDB: 2YIL_E 2YIP_C 2YIO_A.
Probab=49.69 E-value=10 Score=26.64 Aligned_cols=22 Identities=18% Similarity=0.804 Sum_probs=17.1
Q ss_pred chhhHHhhccCCCceEeEeccC
Q 008872 360 NEDKCKDQCSNNCSCKAYAYEI 381 (550)
Q Consensus 360 ~~~~C~~~Cl~nCsC~a~~~~~ 381 (550)
+.++|.++|..+=.|.++.|..
T Consensus 17 s~~~C~~~C~~~~~C~~~~~~~ 38 (51)
T PF14295_consen 17 SPEECQAACAADPGCQAFTFNP 38 (51)
T ss_dssp -HHHHHHHHHTSTT--EEEEET
T ss_pred CHHHHHHHccCCCCCCEEEEEC
Confidence 7899999999999999988864
No 267
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=49.65 E-value=59 Score=33.75 Aligned_cols=52 Identities=23% Similarity=0.332 Sum_probs=23.5
Q ss_pred eCCcEEEEcC-CccEEEeeccccCc---CCCCceEEEecCCCeEEEeCCCCceeee
Q 008872 97 EDGNLVVLNG-KKQVHWSSNVSSLA---NNSNTRAQLLDSGNLVLHDNISQVSIWD 148 (550)
Q Consensus 97 ~~G~L~l~~~-~~~~~W~s~~~~~~---~~~~~~~~l~d~GNlvl~~~~~~~~~Wq 148 (550)
.+|.|+.+|. .|..+|..+..... -.........++|.|+..|..++..+|+
T Consensus 249 ~~g~l~a~d~~tG~~~W~~~~~~~~~p~~~~~~vyv~~~~G~l~~~d~~tG~~~W~ 304 (377)
T TIGR03300 249 YQGRVAALDLRSGRVLWKRDASSYQGPAVDDNRLYVTDADGVVVALDRRSGSELWK 304 (377)
T ss_pred cCCEEEEEECCCCcEEEeeccCCccCceEeCCEEEEECCCCeEEEEECCCCcEEEc
Confidence 3555555554 34556654421110 0012222334456666666544555664
No 268
>PF01034 Syndecan: Syndecan domain; InterPro: IPR001050 The syndecans are transmembrane proteoglycans which are involved in the organisation of cytoskeleton and/or actin microfilaments, and have important roles as cell surface receptors during cell-cell and/or cell-matrix interactions [, ]. Structurally, these proteins consist of four separate domains: A signal sequence; An extracellular domain (ectodomain) of variable length whose sequence is not evolutionary conserved in the various forms of syndecans. The ectodomain contains the sites of attachment of the heparan sulphate glycosaminoglycan side chains; A transmembrane region; A highly conserved cytoplasmic domain of about 30 to 35 residues, which could interact with cytoskeletal proteins. The proteins known to belong to this family are: Syndecan 1. Syndecan 2 or fibroglycan. Syndecan 3 or neuroglycan or N-syndecan. Syndecan 4 or amphiglycan or ryudocan. Drosophila syndecan. Caenorhabditis elegans probable syndecan (F57C7.3). Syndecan-4, a transmembrane heparan sulphate proteoglycan, is a coreceptor with integrins in cell adhesion. It has been suggested to form a ternary signalling complex with protein kinase Calpha and phosphatidylinositol 4,5-bisphosphate (PIP2). Structural studies have demonstrated that the cytoplasmic domain undergoes a conformational transition and forms a symmetric dimer in the presence of phospholipid activator PIP2, and whose overall structure in solution exhibits a twisted clamp shape having a cavity in the centre of dimeric interface. In addition, it has been observed that the syndecan-4 variable domain interacts, strongly, not only with fatty acyl groups but also the anionic head group of PIP2. These findings indicate that PIP2 promotes oligomerisation of the syndecan-4 cytoplasmic domain for transmembrane signalling and cell-matrix adhesion [, ].; GO: 0008092 cytoskeletal protein binding, 0016020 membrane; PDB: 1EJQ_B 1EJP_B 1YBO_C 1OBY_Q.
Probab=49.50 E-value=5.4 Score=30.21 Aligned_cols=11 Identities=27% Similarity=0.588 Sum_probs=0.0
Q ss_pred EEEeehhhHHH
Q 008872 423 IILSVIVGIIA 433 (550)
Q Consensus 423 i~i~v~~~~lv 433 (550)
+++++++++++
T Consensus 14 vIaG~Vvgll~ 24 (64)
T PF01034_consen 14 VIAGGVVGLLF 24 (64)
T ss_dssp -----------
T ss_pred HHHHHHHHHHH
Confidence 33444444333
No 269
>KOG0664 consensus Nemo-like MAPK-related serine/threonine protein kinase [Signal transduction mechanisms]
Probab=48.30 E-value=9.1 Score=37.92 Aligned_cols=46 Identities=20% Similarity=0.412 Sum_probs=33.2
Q ss_pred ceeccCCCccEEEEEeC-CCCEEEEEEcccc--CCcCHHHHHHHHHHhh
Q 008872 501 NKLGQGGFGPVYKGKLQ-DGQEIAVKRLSKA--SGQGQEEFMNEVMIHK 546 (550)
Q Consensus 501 ~~LG~G~fG~VYKG~L~-~g~~VAVKrL~~~--s~~~~~eF~~Ev~~i~ 546 (550)
+-||-|+||.|+..+-| +|+.||.||+-.. +-...+.|-.|++++.
T Consensus 59 RPIGYGAFGVVWsVTDPRdgrrvalkK~pnvfq~L~s~krvFre~kmLc 107 (449)
T KOG0664|consen 59 RPIGYGAFGVVWSVTDPRSGKRVALKKMPNVFQNLASCKRVFREIKMLS 107 (449)
T ss_pred CcccccceeEEEeccCCCCccchhHhhcchHHHHHHHHHHHHHHHHHHH
Confidence 78999999999987764 6899999998432 1123455667776664
No 270
>PF08277 PAN_3: PAN-like domain; InterPro: IPR006583 PAN domains have significant functional versatility fulfilling diverse biological functions by mediating protein-protein or protein-carbohydrate interactions []. These domains contain a hair-pin loop like structure, similar to knottins, but the pattern of disulphide bonds differs The PAN-3 or CW is a domain associated with a number of Caenorhabditis elegans hypothetical proteins.
Probab=48.27 E-value=33 Score=26.18 Aligned_cols=29 Identities=21% Similarity=0.623 Sum_probs=25.1
Q ss_pred chhhHHhhccCCCceEeEeccCCcceeeee
Q 008872 360 NEDKCKDQCSNNCSCKAYAYEIGVGCMIWT 389 (550)
Q Consensus 360 ~~~~C~~~Cl~nCsC~a~~~~~g~~C~~~~ 389 (550)
+.++|-..|..+-.|..+.+. ...|.++.
T Consensus 21 sw~~Cv~~C~~~~~C~la~~~-~~~C~~y~ 49 (71)
T PF08277_consen 21 SWDDCVQKCYNDENCVLAYFD-SGKCYLYN 49 (71)
T ss_pred CHHHHhHHhCCCCEEEEEEeC-CCCEEEEE
Confidence 678999999999999998887 66798765
No 271
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=47.58 E-value=32 Score=28.49 Aligned_cols=32 Identities=13% Similarity=0.305 Sum_probs=21.5
Q ss_pred CCceEEEEeCCCCCCCCCCceEEEeeCCcEEEE
Q 008872 72 ANKTVVWVANRNKPLIDSSGIFTISEDGNLVVL 104 (550)
Q Consensus 72 ~~~~~vW~anr~~p~~~~~~~l~l~~~G~L~l~ 104 (550)
|..++.|+-+....+. .+..+.+..+|+|.+.
T Consensus 32 P~P~i~W~~~~~~~i~-~~~Ri~~~~~GnL~fs 63 (95)
T cd05845 32 VPLRIYWMNSDLLHIT-QDERVSMGQNGNLYFA 63 (95)
T ss_pred CCCEEEEECCCCcccc-ccccEEECCCceEEEE
Confidence 6678899854433343 3567788778888774
No 272
>smart00605 CW CW domain.
Probab=46.84 E-value=40 Score=27.57 Aligned_cols=39 Identities=18% Similarity=0.512 Sum_probs=27.4
Q ss_pred chhhHHhhccCCCceEeEeccCCcceeeeec-cccccccc
Q 008872 360 NEDKCKDQCSNNCSCKAYAYEIGVGCMIWTH-NLIDIRKL 398 (550)
Q Consensus 360 ~~~~C~~~Cl~nCsC~a~~~~~g~~C~~~~~-~l~~~~~~ 398 (550)
+-++|...|..+..|..+.......|.++.. .+..+.+.
T Consensus 23 sw~~Ci~~C~~~~~Cvlay~~~~~~C~~f~~~~~~~v~~~ 62 (94)
T smart00605 23 SWDECIQKCYEDSNCVLAYGNSSETCYLFSYGTVLTVKKL 62 (94)
T ss_pred CHHHHHHHHhCCCceEEEecCCCCceEEEEcCCeEEEEEc
Confidence 6789999999999999876553356976543 33344443
No 273
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=45.09 E-value=32 Score=21.24 Aligned_cols=21 Identities=19% Similarity=0.253 Sum_probs=15.5
Q ss_pred eEEEeeCCcEEEEcCCccEEE
Q 008872 92 IFTISEDGNLVVLNGKKQVHW 112 (550)
Q Consensus 92 ~l~l~~~G~L~l~~~~~~~~W 112 (550)
-+.+..+|++++.|..+..||
T Consensus 6 gvav~~~g~i~VaD~~n~rV~ 26 (28)
T PF01436_consen 6 GVAVDSDGNIYVADSGNHRVQ 26 (28)
T ss_dssp EEEEETTSEEEEEECCCTEEE
T ss_pred EEEEeCCCCEEEEECCCCEEE
Confidence 467778888888887666555
No 274
>KOG1345 consensus Serine/threonine kinase [Signal transduction mechanisms]
Probab=44.78 E-value=16 Score=36.47 Aligned_cols=45 Identities=22% Similarity=0.538 Sum_probs=33.7
Q ss_pred ccccceeccCCCccEEEEEeC-CCCEEEEEEccccCCcCHHHHHHHH
Q 008872 497 FQLANKLGQGGFGPVYKGKLQ-DGQEIAVKRLSKASGQGQEEFMNEV 542 (550)
Q Consensus 497 Fs~~~~LG~G~fG~VYKG~L~-~g~~VAVKrL~~~s~~~~~eF~~Ev 542 (550)
|..++.||+|.||.+..++-. ..+.+++|-+.+. ....++|..|-
T Consensus 26 y~I~k~lgeG~FgkIlL~eHr~s~t~ivlKavp~p-~tt~~dF~rEf 71 (378)
T KOG1345|consen 26 YTINKQLGEGRFGKILLAEHRQSKTRIVLKAVPRP-QTTQADFVREF 71 (378)
T ss_pred hhHHHHhcccceeeEEeeeccCCceEEEeeccCcc-hhhHHHHHHHh
Confidence 555588999999999888774 4678999988532 33467888884
No 275
>PF15345 TMEM51: Transmembrane protein 51
Probab=44.11 E-value=51 Score=31.82 Aligned_cols=18 Identities=17% Similarity=0.379 Sum_probs=8.6
Q ss_pred EEEEEEccccCCcCHHHHH
Q 008872 521 EIAVKRLSKASGQGQEEFM 539 (550)
Q Consensus 521 ~VAVKrL~~~s~~~~~eF~ 539 (550)
++-|.|++ ....+.++|.
T Consensus 193 PlkvRRIK-SeKLhlKdfr 210 (233)
T PF15345_consen 193 PLKVRRIK-SEKLHLKDFR 210 (233)
T ss_pred CceEEEec-cccccccchh
Confidence 34555553 2234455665
No 276
>KOG1226 consensus Integrin beta subunit (N-terminal portion of extracellular region) [Signal transduction mechanisms; Extracellular structures]
Probab=41.65 E-value=50 Score=37.31 Aligned_cols=22 Identities=32% Similarity=0.839 Sum_probs=14.0
Q ss_pred ccCCCcccCCCCCCcCCCCCCCCcC
Q 008872 296 KCGAFGSCNSQKIPICSCLLGFEPK 320 (550)
Q Consensus 296 ~CG~~g~C~~~~~~~C~C~~gf~~~ 320 (550)
+||-+|-|. -..|.|-+|+.+.
T Consensus 556 lC~g~G~C~---CG~CvC~~GwtG~ 577 (783)
T KOG1226|consen 556 LCGGHGRCE---CGRCVCNPGWTGS 577 (783)
T ss_pred ccCCCCeEe---CCcEEcCCCCccC
Confidence 366666663 2358888888764
No 277
>KOG0671 consensus LAMMER dual specificity kinases [Signal transduction mechanisms]
Probab=41.43 E-value=12 Score=38.82 Aligned_cols=48 Identities=21% Similarity=0.322 Sum_probs=35.1
Q ss_pred cceeccCCCccEEEEEeCC-CCEEEEEEccccCCcCHHHHHHHHHHhhcc
Q 008872 500 ANKLGQGGFGPVYKGKLQD-GQEIAVKRLSKASGQGQEEFMNEVMIHKDK 548 (550)
Q Consensus 500 ~~~LG~G~fG~VYKG~L~~-g~~VAVKrL~~~s~~~~~eF~~Ev~~i~~l 548 (550)
-.++|+|.||.|-+..-.. +..||||.++.... -.+.=+-|+.++.++
T Consensus 94 ~~~lGeGtFGkV~ec~D~~~~~~vAlKIik~V~k-YreAa~iEi~vLqki 142 (415)
T KOG0671|consen 94 VDLLGEGTFGKVVECWDRETKEHVALKIIKNVDK-YREAALIEIEVLQKI 142 (415)
T ss_pred hhhhcCCcccceEEEeecCCCceehHHHHHHHHH-HhhHHHHHHHHHHHH
Confidence 3689999999999875432 68999999865432 234466788887776
No 278
>KOG0033 consensus Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=37.60 E-value=1.7 Score=42.30 Aligned_cols=47 Identities=28% Similarity=0.406 Sum_probs=34.6
Q ss_pred ceeccCCCccEEEEEe-CCCCEEEEEEcc--ccCCcCHHHHHHHHHHhhc
Q 008872 501 NKLGQGGFGPVYKGKL-QDGQEIAVKRLS--KASGQGQEEFMNEVMIHKD 547 (550)
Q Consensus 501 ~~LG~G~fG~VYKG~L-~~g~~VAVKrL~--~~s~~~~~eF~~Ev~~i~~ 547 (550)
++||+|.|..||+..- +.|+..|+|.++ +.+..+.++...|+++--.
T Consensus 17 e~igkG~FSvVrRc~~~~tg~~fa~kiin~~k~~~~~~e~l~rEarIC~~ 66 (355)
T KOG0033|consen 17 EELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARICRK 66 (355)
T ss_pred HHHccCchHHHHHHHhccchHHHHHHHhhhhhhccccHHHHHHHHHHHHh
Confidence 6899999999998644 568888887663 2344467788888876543
No 279
>PF06697 DUF1191: Protein of unknown function (DUF1191); InterPro: IPR010605 This family contains hypothetical plant proteins of unknown function.
Probab=35.67 E-value=40 Score=33.64 Aligned_cols=20 Identities=15% Similarity=0.373 Sum_probs=11.0
Q ss_pred cceEEEEEeehhhHHHHHHH
Q 008872 418 DMKLVIILSVIVGIIAIAIC 437 (550)
Q Consensus 418 ~~~~~i~i~v~~~~lvl~~~ 437 (550)
.+++.+++++++++++++++
T Consensus 210 ~~~W~iv~g~~~G~~~L~ll 229 (278)
T PF06697_consen 210 SWWWKIVVGVVGGVVLLGLL 229 (278)
T ss_pred ceeEEEEEEehHHHHHHHHH
Confidence 44455666666665555444
No 280
>COG0478 RIO-like serine/threonine protein kinase fused to N-terminal HTH domain [Signal transduction mechanisms]
Probab=34.98 E-value=38 Score=33.96 Aligned_cols=26 Identities=35% Similarity=0.454 Sum_probs=24.7
Q ss_pred ceeccCCCccEEEEEeCCCCEEEEEE
Q 008872 501 NKLGQGGFGPVYKGKLQDGQEIAVKR 526 (550)
Q Consensus 501 ~~LG~G~fG~VYKG~L~~g~~VAVKr 526 (550)
++||.|.-+.||.|..++|..+|||-
T Consensus 97 ~~IGvGKEsdVY~~~~~~g~~~~vKf 122 (304)
T COG0478 97 TKIGVGKESDVYVAIDPKGRKVAVKF 122 (304)
T ss_pred cccccCccceEEEEECCCCCEEEEEE
Confidence 89999999999999999999999994
No 281
>cd01099 PAN_AP_HGF Subfamily of PAN/APPLE-like domains; present in N-terminal (N) domains of plasminogen/hepatocyte growth factor proteins, and various proteins found in Bilateria, such as leech anti-platelet proteins. PAN/APPLE domains fulfill diverse biological functions by mediating protein-protein or protein-carbohydrate interactions.
Probab=33.82 E-value=39 Score=26.77 Aligned_cols=31 Identities=19% Similarity=0.714 Sum_probs=23.9
Q ss_pred cchhhHHhhccC--CCceEeEeccC-Ccceeeee
Q 008872 359 ANEDKCKDQCSN--NCSCKAYAYEI-GVGCMIWT 389 (550)
Q Consensus 359 ~~~~~C~~~Cl~--nCsC~a~~~~~-g~~C~~~~ 389 (550)
.++++|...|++ +=.|.++.|.. ...|.+-.
T Consensus 25 ~s~~~C~~~C~~~~~f~CrSf~y~~~~~~C~L~~ 58 (80)
T cd01099 25 ASLEECLRKCLEETEFTCRSFNYNYKSKECILSD 58 (80)
T ss_pred CCHHHHHHHhCCCCCceEeEEEEEcCCCEEEEeC
Confidence 478999999999 77888888753 34597643
No 282
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=33.81 E-value=22 Score=36.03 Aligned_cols=9 Identities=22% Similarity=0.423 Sum_probs=3.8
Q ss_pred HHHhhhhhh
Q 008872 440 FAWRWFAKR 448 (550)
Q Consensus 440 ~~~~~~r~~ 448 (550)
+++|+||++
T Consensus 277 LILRYRRKK 285 (299)
T PF02009_consen 277 LILRYRRKK 285 (299)
T ss_pred HHHHHHHHh
Confidence 344444433
No 283
>PF13908 Shisa: Wnt and FGF inhibitory regulator
Probab=33.41 E-value=32 Score=31.98 Aligned_cols=14 Identities=57% Similarity=0.788 Sum_probs=6.3
Q ss_pred EEEEEeehhhHHHH
Q 008872 421 LVIILSVIVGIIAI 434 (550)
Q Consensus 421 ~~i~i~v~~~~lvl 434 (550)
..|+++++++++++
T Consensus 78 ~~iivgvi~~Vi~I 91 (179)
T PF13908_consen 78 TGIIVGVICGVIAI 91 (179)
T ss_pred eeeeeehhhHHHHH
Confidence 34555554444333
No 284
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=33.35 E-value=1.1e+02 Score=33.19 Aligned_cols=77 Identities=19% Similarity=0.302 Sum_probs=46.4
Q ss_pred CCceEEEEeCCC-------CCCCCCCceEEEe-eCCcEEEEcC-CccEEEeeccccC--------cCC-----C-CceEE
Q 008872 72 ANKTVVWVANRN-------KPLIDSSGIFTIS-EDGNLVVLNG-KKQVHWSSNVSSL--------ANN-----S-NTRAQ 128 (550)
Q Consensus 72 ~~~~~vW~anr~-------~p~~~~~~~l~l~-~~G~L~l~~~-~~~~~W~s~~~~~--------~~~-----~-~~~~~ 128 (550)
...+++|..+-. .|+.. +.++.+. .+|.|+-.|. +|.++|+.+.... ... . .....
T Consensus 37 ~~~~~~W~~~~~~~~~~~~sPvv~-~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v 115 (488)
T cd00216 37 KKLKVAWTFSTGDERGQEGTPLVV-DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVFF 115 (488)
T ss_pred hcceeeEEEECCCCCCcccCCEEE-CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEccCCeEEE
Confidence 345678887654 23332 2455444 4688888886 5889999765321 000 0 11122
Q ss_pred EecCCCeEEEeCCCCceeeee
Q 008872 129 LLDSGNLVLHDNISQVSIWDS 149 (550)
Q Consensus 129 l~d~GNlvl~~~~~~~~~WqS 149 (550)
-..+|.++-+|..+++++|+-
T Consensus 116 ~~~~g~v~AlD~~TG~~~W~~ 136 (488)
T cd00216 116 GTFDGRLVALDAETGKQVWKF 136 (488)
T ss_pred ecCCCeEEEEECCCCCEeeee
Confidence 235788888888778999994
No 285
>cd05081 PTKc_Jak2_Jak3_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3. Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as th
Probab=33.19 E-value=39 Score=33.15 Aligned_cols=33 Identities=27% Similarity=0.444 Sum_probs=25.8
Q ss_pred CCCCEEEEEEccccCCcCHHHHHHHHHHhhccc
Q 008872 517 QDGQEIAVKRLSKASGQGQEEFMNEVMIHKDKV 549 (550)
Q Consensus 517 ~~g~~VAVKrL~~~s~~~~~eF~~Ev~~i~~l~ 549 (550)
.++..||||++........++|.+|++++.++.
T Consensus 31 ~~~~~v~iK~~~~~~~~~~~~~~~e~~~l~~l~ 63 (284)
T cd05081 31 NTGEVVAVKKLQHSTAEHLRDFEREIEILKSLQ 63 (284)
T ss_pred CCCcEEEEEEeccCCHHHHHHHHHHHHHHHhCC
Confidence 457889999996554455678999999998864
No 286
>KOG4717 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=31.81 E-value=30 Score=37.49 Aligned_cols=46 Identities=28% Similarity=0.412 Sum_probs=32.8
Q ss_pred ceeccCCCccEEEEEe-CCCCEEEEEEcccc--CCcCHHHHHHHHHHhh
Q 008872 501 NKLGQGGFGPVYKGKL-QDGQEIAVKRLSKA--SGQGQEEFMNEVMIHK 546 (550)
Q Consensus 501 ~~LG~G~fG~VYKG~L-~~g~~VAVKrL~~~--s~~~~~eF~~Ev~~i~ 546 (550)
+-||+|.|..|-.+.- =.|..||||.+++. ..........||+-|-
T Consensus 24 kTlG~GHFAVVKLArHVFTGekVAVKviDKTKlD~~st~hlfqEVRCMK 72 (864)
T KOG4717|consen 24 KTLGRGHFAVVKLARHVFTGEKVAVKVIDKTKLDTLSTGHLFQEVRCMK 72 (864)
T ss_pred hhhcCCceehhhhhhhhcccceeEEEEecccccchhhhhHHHHHHHHHH
Confidence 6799999998865432 25788999999654 2333456788888774
No 287
>PF14670 FXa_inhibition: Coagulation Factor Xa inhibitory site; PDB: 3Q3K_B 1NFY_B 1LQD_A 1G2L_B 1IQF_L 2UWP_B 2VH6_B 3KQC_L 2P93_L 2BQW_A ....
Probab=30.89 E-value=13 Score=24.85 Aligned_cols=14 Identities=29% Similarity=0.534 Sum_probs=10.0
Q ss_pred CCCcCCCCCCCCcC
Q 008872 307 KIPICSCLLGFEPK 320 (550)
Q Consensus 307 ~~~~C~C~~gf~~~ 320 (550)
.+..|+|++||...
T Consensus 17 g~~~C~C~~Gy~L~ 30 (36)
T PF14670_consen 17 GSYRCSCPPGYKLA 30 (36)
T ss_dssp TSEEEE-STTEEE-
T ss_pred CceEeECCCCCEEC
Confidence 46789999999765
No 288
>PF12276 DUF3617: Protein of unknown function (DUF3617); InterPro: IPR022061 This family of proteins is found in bacteria. Proteins in this family are typically between 155 and 179 amino acids in length. There is a single completely conserved residue C that may be functionally important.
Probab=30.80 E-value=39 Score=30.59 Aligned_cols=33 Identities=15% Similarity=0.098 Sum_probs=20.5
Q ss_pred ChhHHHHHHHHHhhhcccccccccceecCCCcc
Q 008872 1 MISVAIVVLLSSCFYSDFGTATATDTITSSQFI 33 (550)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~l 33 (550)
|.++++++++++++++.++++++...+.||+.=
T Consensus 1 M~~~~~~~~~~~~~~~~~~~~a~~~~~kpGlWe 33 (162)
T PF12276_consen 1 MKRRLLLALALALLALAAAAAAAAPDIKPGLWE 33 (162)
T ss_pred CchHHHHHHHHHHHHhhcccccccCCCCCcccE
Confidence 667666666555444355555566778777764
No 289
>KOG4645 consensus MAPKKK (MAP kinase kinase kinase) SSK2 and related serine/threonine protein kinases [Signal transduction mechanisms]
Probab=30.79 E-value=27 Score=41.95 Aligned_cols=55 Identities=25% Similarity=0.365 Sum_probs=38.3
Q ss_pred hccccccceeccCCCccEEEEEe-CCCCEEEEEEccc--cCCcCHHHHHHHHHHhhcc
Q 008872 494 TNNFQLANKLGQGGFGPVYKGKL-QDGQEIAVKRLSK--ASGQGQEEFMNEVMIHKDK 548 (550)
Q Consensus 494 T~~Fs~~~~LG~G~fG~VYKG~L-~~g~~VAVKrL~~--~s~~~~~eF~~Ev~~i~~l 548 (550)
+-.....+.||.|-||.||-++= ..|...|||-+.. ......+...+|+.++-.+
T Consensus 1234 ~~rWqrg~~Ig~G~fG~VYtavN~~tGellAvKEI~iq~~~~k~~~~i~eEm~vlE~l 1291 (1509)
T KOG4645|consen 1234 TFRWQRGNFIGGGTFGKVYTAVNLDTGELLAVKEIKIQDSDHKTFKLIAEEMKVLEGL 1291 (1509)
T ss_pred eeeeccccccCCcceeeeEEeecCCccchhhhhhhhcCccccccCcchHHHHHHHHhc
Confidence 33344568999999999998764 5588899997632 2233456677788777554
No 290
>PF12946 EGF_MSP1_1: MSP1 EGF domain 1; InterPro: IPR024730 This EGF-like domain is found at the C terminus of the malaria parasite MSP1 protein. MSP1 is the merozoite surface protein 1. This domain is part of the C-terminal fragment that is proteolytically processed from the the rest of the protein and is left attached to the surface of the invading parasite [].; PDB: 1N1I_C 2FLG_A 1CEJ_A 2NPR_A 1B9W_A 1OB1_F.
Probab=30.64 E-value=10 Score=25.41 Aligned_cols=26 Identities=35% Similarity=0.726 Sum_probs=16.9
Q ss_pred cccCCCcccCC--CCCCcCCCCCCCCcC
Q 008872 295 GKCGAFGSCNS--QKIPICSCLLGFEPK 320 (550)
Q Consensus 295 ~~CG~~g~C~~--~~~~~C~C~~gf~~~ 320 (550)
..|-.|+-|.. ++...|.|++||+..
T Consensus 5 ~~cP~NA~C~~~~dG~eecrCllgyk~~ 32 (37)
T PF12946_consen 5 TKCPANAGCFRYDDGSEECRCLLGYKKV 32 (37)
T ss_dssp S---TTEEEEEETTSEEEEEE-TTEEEE
T ss_pred ccCCCCcccEEcCCCCEEEEeeCCcccc
Confidence 56888999963 356789999999764
No 291
>PTZ00382 Variant-specific surface protein (VSP); Provisional
Probab=29.54 E-value=38 Score=28.12 Aligned_cols=8 Identities=25% Similarity=0.492 Sum_probs=5.3
Q ss_pred CCCCCCcC
Q 008872 313 CLLGFEPK 320 (550)
Q Consensus 313 C~~gf~~~ 320 (550)
|.+|+.+.
T Consensus 9 C~~g~~~~ 16 (96)
T PTZ00382 9 CDSDKKPN 16 (96)
T ss_pred CCCCCccC
Confidence 66777655
No 292
>TIGR02513 type_III_yscB type III secretion system chaperone, YscB family. Members of this family include YscB of Yersinia and functionally equivalent (but differently named) proteins from type III secretion systems of other pathogens that affect animal cells. YscB acts, along with SycN (TIGR02503), as a chaperone for YopN, a key part of a complex that regulates type III secretion so it responds to contact with the eukaryotic target cell.
Probab=29.28 E-value=1e+02 Score=27.15 Aligned_cols=51 Identities=12% Similarity=0.265 Sum_probs=31.5
Q ss_pred CceEEEeeCCc-EEEEcCCccEEEeeccccC----c-------------------CCCCceEEEecCCCeEEEeC
Q 008872 90 SGIFTISEDGN-LVVLNGKKQVHWSSNVSSL----A-------------------NNSNTRAQLLDSGNLVLHDN 140 (550)
Q Consensus 90 ~~~l~l~~~G~-L~l~~~~~~~~W~s~~~~~----~-------------------~~~~~~~~l~d~GNlvl~~~ 140 (550)
.++-.|.-||- |.|.-.++..+|+|..... . -....++++.|+|||+|..+
T Consensus 21 qG~Yhl~iD~~~l~l~q~~sellletpL~~~~~~~~d~q~~~lLk~lmQq~l~w~R~~p~aLvld~~~qLiLear 95 (139)
T TIGR02513 21 QGVYHLTIDQHLVMLAQHGSELVLETPLDARMLRPGDNQNVTLLRSLMQQVLAWARRYPQALVLDADGQLILEAR 95 (139)
T ss_pred CCceEEEEcCcEEEeeccCceEEEeccccchhhCccccccHHHHHHHHHHHHHHHhcCCceEEEcCccchhHHHH
Confidence 34445555664 4455555668899875211 0 00256799999999999754
No 293
>KOG1033 consensus eIF-2alpha kinase PEK/EIF2AK3 [Translation, ribosomal structure and biogenesis]
Probab=29.17 E-value=11 Score=40.50 Aligned_cols=54 Identities=28% Similarity=0.525 Sum_probs=36.3
Q ss_pred hccccccceeccCCCccEEEEEeCC-CCEEEEEEccccC-CcCHHHHHHHHHHhhc
Q 008872 494 TNNFQLANKLGQGGFGPVYKGKLQD-GQEIAVKRLSKAS-GQGQEEFMNEVMIHKD 547 (550)
Q Consensus 494 T~~Fs~~~~LG~G~fG~VYKG~L~~-g~~VAVKrL~~~s-~~~~~eF~~Ev~~i~~ 547 (550)
.++|.....+|+|+||+|+.+.... +-..|||+|.... .....+-++|+..+|+
T Consensus 48 a~~~e~~~~~~~~g~~~~~~~~n~~d~~~~avkritlkn~e~s~~rvl~~~~s~a~ 103 (516)
T KOG1033|consen 48 ANDFEPGQCLGRGGFGVVFSAQNKADENKYAVKRITLKNREESRSRVLREVSSLAE 103 (516)
T ss_pred hccccccccccccCccccCCccccccchhhHHHHhcccchhhhhhhhhccccchhh
Confidence 3568778899999999999887654 4478999984322 2223345555555544
No 294
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=29.04 E-value=2.1e+02 Score=31.11 Aligned_cols=53 Identities=19% Similarity=0.325 Sum_probs=33.1
Q ss_pred CCcEEEEcC-CccEEEeeccc---------cCc------CCCCceEEEecCCCeEEEeCCCCceeeeecC
Q 008872 98 DGNLVVLNG-KKQVHWSSNVS---------SLA------NNSNTRAQLLDSGNLVLHDNISQVSIWDSFQ 151 (550)
Q Consensus 98 ~G~L~l~~~-~~~~~W~s~~~---------~~~------~~~~~~~~l~d~GNlvl~~~~~~~~~WqSFd 151 (550)
+|.|.-.|. +|.++|+.+.. ... ..+.....-..+|.|+.+|..+++++|+ ++
T Consensus 365 ~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG~l~ald~~tG~~lW~-~~ 433 (488)
T cd00216 365 KGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAADGYFRAFDATTGKELWK-FR 433 (488)
T ss_pred ceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEecCCeEEEECCCCeEEEEECCCCceeeE-EE
Confidence 578877775 58899998754 100 0011112224678888888777888888 44
No 295
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=28.60 E-value=26 Score=34.87 Aligned_cols=11 Identities=9% Similarity=0.709 Sum_probs=5.1
Q ss_pred HHHHHhhhhhh
Q 008872 438 TFFAWRWFAKR 448 (550)
Q Consensus 438 ~~~~~~~~r~~ 448 (550)
++++|.+|||+
T Consensus 277 iLYiWlyrrRK 287 (295)
T TIGR01478 277 ILYIWLYRRRK 287 (295)
T ss_pred HHHHHHHHhhc
Confidence 34455554444
No 296
>KOG0599 consensus Phosphorylase kinase gamma subunit [Carbohydrate transport and metabolism]
Probab=28.51 E-value=35 Score=34.04 Aligned_cols=53 Identities=25% Similarity=0.338 Sum_probs=37.0
Q ss_pred ccccceeccCCCccEEEEEe-CCCCEEEEEEccccCC--cC--H----HHHHHHHHHhhccc
Q 008872 497 FQLANKLGQGGFGPVYKGKL-QDGQEIAVKRLSKASG--QG--Q----EEFMNEVMIHKDKV 549 (550)
Q Consensus 497 Fs~~~~LG~G~fG~VYKG~L-~~g~~VAVKrL~~~s~--~~--~----~eF~~Ev~~i~~l~ 549 (550)
+.+.++||+|...+|-+.+. +.|.+.|||+++..+. ++ . ++-..|+.++-++.
T Consensus 19 y~pkeilgrgvss~vrRci~k~t~~e~a~kii~~~at~~~~e~~~~~~EaT~~Ev~ILRqv~ 80 (411)
T KOG0599|consen 19 YEPKEILGRGVSSVVRRCIHKETGKEFAVKIIDVTATTESGETPYEMREATRQEISILRQVM 80 (411)
T ss_pred cChHHHhcccchhhhhhhhhcccccceeEEEEEecccccCCccHHHHHHHHHHHHHHHHHhc
Confidence 44558999999999988876 4578999999853321 11 2 34567888887653
No 297
>PTZ00370 STEVOR; Provisional
Probab=27.67 E-value=27 Score=34.77 Aligned_cols=11 Identities=9% Similarity=0.709 Sum_probs=5.1
Q ss_pred HHHHHhhhhhh
Q 008872 438 TFFAWRWFAKR 448 (550)
Q Consensus 438 ~~~~~~~~r~~ 448 (550)
++++|.+|||+
T Consensus 273 ilYiwlyrrRK 283 (296)
T PTZ00370 273 ILYIWLYRRRK 283 (296)
T ss_pred HHHHHHHHhhc
Confidence 34455554444
No 298
>PHA02887 EGF-like protein; Provisional
Probab=27.57 E-value=47 Score=28.42 Aligned_cols=33 Identities=21% Similarity=0.449 Sum_probs=23.9
Q ss_pred cCCCCc--cccccCCCcccCC---CCCCcCCCCCCCCcC
Q 008872 287 PTNDCD--VYGKCGAFGSCNS---QKIPICSCLLGFEPK 320 (550)
Q Consensus 287 p~~~C~--~~~~CG~~g~C~~---~~~~~C~C~~gf~~~ 320 (550)
--++|. ..+.|= +|.|.. -..+.|.|++||.+.
T Consensus 82 hf~pC~~eyk~YCi-HG~C~yI~dL~epsCrC~~GYtG~ 119 (126)
T PHA02887 82 FFEKCKNDFNDFCI-NGECMNIIDLDEKFCICNKGYTGI 119 (126)
T ss_pred CccccChHhhCEee-CCEEEccccCCCceeECCCCcccC
Confidence 345685 457787 789964 246899999999754
No 299
>PF08114 PMP1_2: ATPase proteolipid family; InterPro: IPR012589 This family consists of small proteolipids associated with the plasma membrane H+ ATPase. Two proteolipids (PMP1 and PMP2) are associated with the ATPase and both genes are similarly expressed in the wild-type strain of yeast. No modification of the level of transcription of one PMP gene is detected in a strain deleted of the other. Though both proteolipids show similarity with other small proteolipids associated with other cation -transporting ATPases, their functions remain unclear [].
Probab=26.43 E-value=89 Score=21.43 Aligned_cols=12 Identities=25% Similarity=0.612 Sum_probs=4.8
Q ss_pred HHHHHHHHhhhh
Q 008872 435 AICTFFAWRWFA 446 (550)
Q Consensus 435 ~~~~~~~~~~~r 446 (550)
+++..+++++..
T Consensus 23 ~iva~~iYRKw~ 34 (43)
T PF08114_consen 23 GIVALFIYRKWQ 34 (43)
T ss_pred HHHHHHHHHHHH
Confidence 333334444433
No 300
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=26.16 E-value=35 Score=28.30 Aligned_cols=9 Identities=44% Similarity=0.556 Sum_probs=4.7
Q ss_pred ChhHHHHHH
Q 008872 1 MISVAIVVL 9 (550)
Q Consensus 1 ~~~~~~~~~ 9 (550)
|+|=.||++
T Consensus 1 MaSK~~llL 9 (95)
T PF07172_consen 1 MASKAFLLL 9 (95)
T ss_pred CchhHHHHH
Confidence 666544444
No 301
>KOG0690 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=25.44 E-value=34 Score=34.98 Aligned_cols=36 Identities=33% Similarity=0.538 Sum_probs=27.0
Q ss_pred ccccccceeccCCCccEEEEEe-CCCCEEEEEEcccc
Q 008872 495 NNFQLANKLGQGGFGPVYKGKL-QDGQEIAVKRLSKA 530 (550)
Q Consensus 495 ~~Fs~~~~LG~G~fG~VYKG~L-~~g~~VAVKrL~~~ 530 (550)
++|.--++||+|.||.|-...= ..|...|+|.|++.
T Consensus 168 ~dFdfLKvLGkGTFGKVIL~rEKat~k~YAiKIlkKe 204 (516)
T KOG0690|consen 168 EDFDFLKVLGKGTFGKVILCREKATGKLYAIKILKKE 204 (516)
T ss_pred chhhHHHHhcCCccceEEEEeecccCceeehhhhhhh
Confidence 4455558999999999975543 35788999999654
No 302
>PF12877 DUF3827: Domain of unknown function (DUF3827); InterPro: IPR024606 The function of the proteins in this entry is not currently known, but one of the human proteins (Q9HCM3 from SWISSPROT) has been implicated in pilocytic astrocytomas [, , ]. In the majority of cases of pilocytic astrocytomas a tandem duplication produces an in-frame fusion of the gene encoding this protein and the BRAF oncogene. The resulting fusion protein has constitutive BRAF kinase activity and is capable of transforming cells.
Probab=25.36 E-value=68 Score=35.66 Aligned_cols=11 Identities=45% Similarity=0.528 Sum_probs=5.2
Q ss_pred eEEEEEeehhh
Q 008872 420 KLVIILSVIVG 430 (550)
Q Consensus 420 ~~~i~i~v~~~ 430 (550)
.++|++++++.
T Consensus 268 NlWII~gVlvP 278 (684)
T PF12877_consen 268 NLWIIAGVLVP 278 (684)
T ss_pred CeEEEehHhHH
Confidence 34455555443
No 303
>KOG4289 consensus Cadherin EGF LAG seven-pass G-type receptor [Signal transduction mechanisms]
Probab=24.47 E-value=39 Score=40.87 Aligned_cols=27 Identities=37% Similarity=0.783 Sum_probs=23.2
Q ss_pred ccccCCCcccCC-CCCCcCCCCCCCCcC
Q 008872 294 YGKCGAFGSCNS-QKIPICSCLLGFEPK 320 (550)
Q Consensus 294 ~~~CG~~g~C~~-~~~~~C~C~~gf~~~ 320 (550)
.+.||++|-|.. .+.++|.|-|||...
T Consensus 1244 s~pC~nng~C~srEggYtCeCrpg~tGe 1271 (2531)
T KOG4289|consen 1244 SGPCGNNGRCRSREGGYTCECRPGFTGE 1271 (2531)
T ss_pred cCCCCCCCceEEecCceeEEecCCcccc
Confidence 578999999974 578999999999865
No 304
>PF07204 Orthoreo_P10: Orthoreovirus membrane fusion protein p10; InterPro: IPR009854 This family consists of several Orthoreovirus membrane fusion protein p10 sequences. p10 is thought to be a multifunctional protein that plays a key role in virus-host interaction [].
Probab=24.37 E-value=43 Score=27.41 Aligned_cols=20 Identities=35% Similarity=0.320 Sum_probs=8.0
Q ss_pred hHHHHHHHHHHHHhhhhhhh
Q 008872 430 GIIAIAICTFFAWRWFAKRK 449 (550)
Q Consensus 430 ~~lvl~~~~~~~~~~~r~~~ 449 (550)
+++++++++.+++.++.|+|
T Consensus 50 G~iLilIii~Lv~CC~~K~K 69 (98)
T PF07204_consen 50 GLILILIIIALVCCCRAKHK 69 (98)
T ss_pred hhhhHHHHHHHHHHhhhhhh
Confidence 33333333334444444443
No 305
>PTZ00046 rifin; Provisional
Probab=23.97 E-value=21 Score=36.88 Aligned_cols=17 Identities=6% Similarity=0.313 Sum_probs=6.6
Q ss_pred HHHHHHHHHhhhhhhhh
Q 008872 434 IAICTFFAWRWFAKRKA 450 (550)
Q Consensus 434 l~~~~~~~~~~~r~~~~ 450 (550)
++++++++..|.||+++
T Consensus 329 LIMvIIYLILRYRRKKK 345 (358)
T PTZ00046 329 LIMVIIYLILRYRRKKK 345 (358)
T ss_pred HHHHHHHHHHHhhhcch
Confidence 33333333333344433
No 306
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=23.28 E-value=80 Score=20.87 Aligned_cols=20 Identities=20% Similarity=0.307 Sum_probs=15.9
Q ss_pred ecCCCeEEEeCCCCceeeee
Q 008872 130 LDSGNLVLHDNISQVSIWDS 149 (550)
Q Consensus 130 ~d~GNlvl~~~~~~~~~WqS 149 (550)
..+|.|+-+|..+++++|+=
T Consensus 7 ~~~g~l~AlD~~TG~~~W~~ 26 (38)
T PF01011_consen 7 TPDGYLYALDAKTGKVLWKF 26 (38)
T ss_dssp TTTSEEEEEETTTTSEEEEE
T ss_pred CCCCEEEEEECCCCCEEEee
Confidence 56788888888778888873
No 307
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=22.89 E-value=1.2e+02 Score=32.97 Aligned_cols=53 Identities=19% Similarity=0.405 Sum_probs=31.8
Q ss_pred CCcEEEEcCCccEEEeeccccCcCCCCceEEEecCCCeEEEeCC-------CCceeeeecCCCC
Q 008872 98 DGNLVVLNGKKQVHWSSNVSSLANNSNTRAQLLDSGNLVLHDNI-------SQVSIWDSFQEPT 154 (550)
Q Consensus 98 ~G~L~l~~~~~~~~W~s~~~~~~~~~~~~~~l~d~GNlvl~~~~-------~~~~~WqSFd~PT 154 (550)
.+..+++|.+|.++|.-...... ...+..+++|+|...... -|.++|+ ++.|.
T Consensus 127 ~~~~~~iD~~G~Vrw~~~~~~~~---~~~~~~l~nG~ll~~~~~~~~e~D~~G~v~~~-~~l~~ 186 (477)
T PF05935_consen 127 SSYTYLIDNNGDVRWYLPLDSGS---DNSFKQLPNGNLLIGSGNRLYEIDLLGKVIWE-YDLPG 186 (477)
T ss_dssp EEEEEEEETTS-EEEEE-GGGT-----SSEEE-TTS-EEEEEBTEEEEE-TT--EEEE-EE--T
T ss_pred CceEEEECCCccEEEEEccCccc---cceeeEcCCCCEEEecCCceEEEcCCCCEEEe-eecCC
Confidence 47889999999999987654322 222778999999976542 4778888 77665
No 308
>TIGR01477 RIFIN variant surface antigen, rifin family. This model represents the rifin branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of rifin sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 20 bits.
Probab=22.84 E-value=23 Score=36.51 Aligned_cols=16 Identities=6% Similarity=0.275 Sum_probs=6.0
Q ss_pred HHHHHHHHhhhhhhhh
Q 008872 435 AICTFFAWRWFAKRKA 450 (550)
Q Consensus 435 ~~~~~~~~~~~r~~~~ 450 (550)
+++++++..|.||+++
T Consensus 325 IMvIIYLILRYRRKKK 340 (353)
T TIGR01477 325 IMVIIYLILRYRRKKK 340 (353)
T ss_pred HHHHHHHHHHhhhcch
Confidence 3333333333344333
No 309
>cd05038 PTKc_Jak_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases. Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; catalytic (c) domain (repeat 2). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Most Jaks are expressed in a wide variety of tissues, except for Jak3, which is expressed only in hematopoietic cells. Jaks are crucial for cytokine receptor signaling. They are activated by aut
Probab=22.55 E-value=86 Score=30.45 Aligned_cols=32 Identities=25% Similarity=0.445 Sum_probs=23.7
Q ss_pred CCCEEEEEEccccCCc-CHHHHHHHHHHhhccc
Q 008872 518 DGQEIAVKRLSKASGQ-GQEEFMNEVMIHKDKV 549 (550)
Q Consensus 518 ~g~~VAVKrL~~~s~~-~~~eF~~Ev~~i~~l~ 549 (550)
.+..||||.+...... ..++|.+|++++.++.
T Consensus 32 ~~~~~avK~~~~~~~~~~~~~~~~ei~~l~~l~ 64 (284)
T cd05038 32 TGEQVAVKSLNHSGEEQHRSDFEREIEILRTLD 64 (284)
T ss_pred CceEEEEEEeccccchHHHHHHHHHHHHHHhCC
Confidence 5678999999644322 4678999999988763
No 310
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=22.25 E-value=3.3e+02 Score=28.18 Aligned_cols=78 Identities=23% Similarity=0.382 Sum_probs=47.0
Q ss_pred CCceEEEEeCCC-------CCCCCCCceEEEee-CCcEEEEcC-CccEEEeecccc---CcC---CCCceEEEe-cCCCe
Q 008872 72 ANKTVVWVANRN-------KPLIDSSGIFTISE-DGNLVVLNG-KKQVHWSSNVSS---LAN---NSNTRAQLL-DSGNL 135 (550)
Q Consensus 72 ~~~~~vW~anr~-------~p~~~~~~~l~l~~-~G~L~l~~~-~~~~~W~s~~~~---~~~---~~~~~~~l~-d~GNl 135 (550)
....++|.-.-. .|+....+++.+.. +|.|+-+|. +|..+|+.+... -.. .....+... ++|++
T Consensus 86 ~~g~~~W~~~~~~~~~~~~~~~~~~~G~i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~~~~~v~~~~~v~~~s~~g~~ 165 (370)
T COG1520 86 DTGLVKWSYPLLGAVAQLSGPILGSDGKIYVGSWDGKLYALDASTGTLVWSRNVGGSPYYASPPVVGDGTVYVGTDDGHL 165 (370)
T ss_pred CCCcEEecccCcCcceeccCceEEeCCeEEEecccceEEEEECCCCcEEEEEecCCCeEEecCcEEcCcEEEEecCCCeE
Confidence 445667833322 33333345555554 476777788 799999987655 110 001122223 68999
Q ss_pred EEEeCCCCceeeee
Q 008872 136 VLHDNISQVSIWDS 149 (550)
Q Consensus 136 vl~~~~~~~~~WqS 149 (550)
+-.+.+++..+|+=
T Consensus 166 ~al~~~tG~~~W~~ 179 (370)
T COG1520 166 YALNADTGTLKWTY 179 (370)
T ss_pred EEEEccCCcEEEEE
Confidence 99988878889983
No 311
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=21.78 E-value=31 Score=30.03 Aligned_cols=16 Identities=0% Similarity=-0.064 Sum_probs=6.5
Q ss_pred HHHHHHHHHhhhhhhh
Q 008872 434 IAICTFFAWRWFAKRK 449 (550)
Q Consensus 434 l~~~~~~~~~~~r~~~ 449 (550)
++.++++++++.||++
T Consensus 77 vIg~Illi~y~irR~~ 92 (122)
T PF01102_consen 77 VIGIILLISYCIRRLR 92 (122)
T ss_dssp HHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHh
Confidence 3344444444444333
No 312
>PF14610 DUF4448: Protein of unknown function (DUF4448)
Probab=21.66 E-value=65 Score=30.18 Aligned_cols=9 Identities=11% Similarity=0.198 Sum_probs=3.6
Q ss_pred EEEEeehhh
Q 008872 422 VIILSVIVG 430 (550)
Q Consensus 422 ~i~i~v~~~ 430 (550)
.+++++.++
T Consensus 159 ~laI~lPvv 167 (189)
T PF14610_consen 159 ALAIALPVV 167 (189)
T ss_pred eEEEEccHH
Confidence 344444333
No 313
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=21.48 E-value=8.5e+02 Score=24.58 Aligned_cols=11 Identities=9% Similarity=0.522 Sum_probs=7.3
Q ss_pred CCceEEEEeCC
Q 008872 72 ANKTVVWVANR 82 (550)
Q Consensus 72 ~~~~~vW~anr 82 (550)
....|+|....
T Consensus 173 ~tG~I~W~lgG 183 (299)
T PF14269_consen 173 STGKIIWRLGG 183 (299)
T ss_pred CCCcEEEEeCC
Confidence 55677787753
No 314
>PF12458 DUF3686: ATPase involved in DNA repair ; InterPro: IPR020958 This entry represents an N-terminal domain associated with ATPases and some uncharacterised proteins; it is approximately 450 amino acids in length and contains two conserved sequence motifs: DVF and SPNGED.
Probab=21.32 E-value=1.7e+02 Score=31.06 Aligned_cols=58 Identities=24% Similarity=0.382 Sum_probs=35.5
Q ss_pred CCeEEeCCC-eEEEeeecCCCCCCccEEEEEeecCCCCCceEEEEeCCCCCCCCCCceEEEeeCCcEEEEcCC
Q 008872 36 PESIISSGS-KFKLGFFSPDGNFTNRYIGIWYNKGGSANKTVVWVANRNKPLIDSSGIFTISEDGNLVVLNGK 107 (550)
Q Consensus 36 ~~~l~S~~g-~F~~gf~~~~~~~~~~~l~i~~~~~~~~~~~~vW~anr~~p~~~~~~~l~l~~~G~L~l~~~~ 107 (550)
...+.|||| ++-..|+.+. ...|+=.-|+-| . +. =..|+... -..+..||.|++..+.
T Consensus 310 ~r~vrSPNGEDvLYvF~~~~---~g~~~Ll~YN~I--~-k~------v~tPi~ch--G~alf~DG~l~~fra~ 368 (448)
T PF12458_consen 310 ERKVRSPNGEDVLYVFYARE---EGRYLLLPYNLI--R-KE------VATPIICH--GYALFEDGRLVYFRAE 368 (448)
T ss_pred EEEecCCCCceEEEEEEECC---CCcEEEEechhh--h-hh------hcCCeecc--ceeEecCCEEEEEecC
Confidence 345889999 6777777776 234554556655 1 11 13466532 3567788988887655
No 315
>PF11403 Yeast_MT: Yeast metallothionein; InterPro: IPR022710 Metallothioneins are characterised by an abundance of cysteine residues and a lack of generic secondary structure motifs. This protein functions in primary metal storage, transport and detoxification []. For the first 40 residues in the protein the polypeptide wraps around the metal by forming two large parallel loops separated by a deep cleft containing the metal cluster []. ; PDB: 1AQS_A 1AQR_A 1RJU_V 1FMY_A 1AOO_A 1AQQ_A.
Probab=20.11 E-value=1e+02 Score=20.04 Aligned_cols=21 Identities=33% Similarity=0.778 Sum_probs=10.2
Q ss_pred cccCCCcccCCCCCCcCCCCCCCCc
Q 008872 295 GKCGAFGSCNSQKIPICSCLLGFEP 319 (550)
Q Consensus 295 ~~CG~~g~C~~~~~~~C~C~~gf~~ 319 (550)
|.|-.+.-| ..+|+||.|-..
T Consensus 12 gscknneqc----qkscscptgcns 32 (40)
T PF11403_consen 12 GSCKNNEQC----QKSCSCPTGCNS 32 (40)
T ss_dssp STTTT-TTS----TTS-SS-TTTTS
T ss_pred CCccChHHH----hhcCCCCCCCCC
Confidence 344445444 356999887643
Done!