BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008873
(550 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2ECF|A Chain A, Crystal Structure Of Dipeptidyl Aminopeptidase Iv From
Stenotrophomonas Maltophilia
Length = 741
Score = 296 bits (759), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 183/538 (34%), Positives = 276/538 (51%), Gaps = 39/538 (7%)
Query: 1 MDRKTGYWWSLDSKFIAFTQVDSSEIP---RFRIMHQGKSSVGSEAQEDHAYPFAGASNV 57
MDR TGYWW+ D IA+ ++D S +P R+ + + + YP AG +NV
Sbjct: 208 MDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVI------EQRYPAAGDANV 261
Query: 58 KVRLGVVS-AAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVL 116
+V+LGV+S A W+DL G +Q+ YLARVNW L+ Q +R Q KL ++
Sbjct: 262 QVKLGVISPAEQAQTQWIDL---GKEQDI---YLARVNWRDPQHLSFQRQSRDQKKLDLV 315
Query: 117 KFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDING 176
+ + + Q++V+ E +WV LH+ LD G +W+SE+TGF+HLY D G
Sbjct: 316 EVTLASNQQRVLAHETSPTWVPLHNSLRFLD------DGSILWSSERTGFQHLYRIDSKG 369
Query: 177 TCLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLT 236
+T G+W V++++ V+E +G YF ++ ES +Y L P +L+
Sbjct: 370 KAAA-LTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPLQGG------QPQRLS 422
Query: 237 NGKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLYEQPLTVPRIK----R 292
G H A N +VD + +PP+I L +G + L E L P+ R
Sbjct: 423 KAPGMHSASFARNASVYVDSWSNNSTPPQIELFR-ANGEKIATLVENDLADPKHPYARYR 481
Query: 293 LQLEPPDIVQIQANDG-TVLYGALYKPDESRYGPPP-YKTLISVYGGPCVQLVCDSWINT 350
P + + A DG T L ++ KP + + P Y + VYGGP Q V DSW
Sbjct: 482 EAQRPVEFGTLTAADGKTPLNYSVIKP--AGFDPAKRYPVAVYVYGGPASQTVTDSWPGR 539
Query: 351 VD-MRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLA 409
D + QYL +G +V+ LDNRGT RRG F ++ G ++ DQL G WL +Q
Sbjct: 540 GDHLFNQYLAQQGYVVFSLDNRGTPRRGRDFGGALYGKQGTVEVADQLRGVAWLKQQPWV 599
Query: 410 KVGHIXXXXXXXXXXXXAITLARFPDVFQCAVSGAPVTSWDGYDTFYTEKYMGLPSEDPV 469
I + LA+ D + C V+GAPVT W YD+ YTE+YM LP+ +
Sbjct: 600 DPARIGVQGWSNGGYMTLMLLAKASDSYACGVAGAPVTDWGLYDSHYTERYMDLPARNDA 659
Query: 470 GYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERH 527
GY + V+ H+ ++ LLL+HGM D+NV F ++ L++AL +P+E++ +P +H
Sbjct: 660 GYREARVLTHIEGLRSPLLLIHGMADDNVLFTNSTSLMSALQKRGQPFELMTYPGAKH 717
>pdb|2DCM|A Chain A, The Crystal Structure Of S603a Mutated Prolyl Tripeptidyl
Aminopeptidase Complexed With Substrate
Length = 706
Score = 208 bits (529), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 157/548 (28%), Positives = 247/548 (45%), Gaps = 37/548 (6%)
Query: 6 GYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVS 65
G +WS +AF ++D S + I+ S+ YP AG + V +G+
Sbjct: 185 GTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPL---YYPMAGTPSHHVTVGIYH 241
Query: 66 AAGGPVSWMDLQCGGTDQNYDEEYLARVNWM-HGNILTAQVLNRSQTKLKVLKFDIKTGQ 124
A G + LQ G E++L ++W NIL +NR+Q + KV +D +TG+
Sbjct: 242 LATGKTVY--LQTG----EPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGR 295
Query: 125 R-KVILVEELDSWVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTCLGPIT 183
+ + VE +V T L + FIW S + G+ HLYL+D G + +T
Sbjct: 296 FVRTLFVETDKHYVEPLHPLTFLPGSNNQ----FIWQSRRDGWNHLYLYDTTGRLIRQVT 351
Query: 184 EGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTNGKGKHV 243
+G+W V G + ++YF T PLE H YC + LT G H
Sbjct: 352 KGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGKTK------DLTPESGMHR 405
Query: 244 AVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLYEQPLT---VPRIKRLQLEPPDI 300
L + +D S P ++ + ++ GS L + P T +P I+
Sbjct: 406 TQLSPDGSAIIDIFQSPTVPRKVTVTNIGKGSHTLLEAKNPDTGYAMPEIR--------T 457
Query: 301 VQIQANDG-TVLYGALYKPDESRYGPPP-YKTLISVYGGPCVQLVCDSWINTVDMRAQYL 358
I A DG T LY L P + P Y ++ VYGGP QLV +W ++V Y+
Sbjct: 458 GTIMAADGQTPLYYKLTMP--LHFDPAKKYPVIVYVYGGPHAQLVTKTWRSSVGGWDIYM 515
Query: 359 RSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIXXXX 418
KG V+ +D+RG+A RG FE I G+ + DQ+ G ++L Q I
Sbjct: 516 AQKGYAVFTVDSRGSANRGAAFEQVIHRRLGQTEMADQMCGVDFLKSQSWVDADRIGVHG 575
Query: 419 XXXXXXXXAITLARFPDVFQCAVSGAPVTSWDGYDTFYTEKYMGLPSEDPVGYEYSSVMH 478
+ DVF+ V+G PV W+ Y+ Y E+Y P E+P GY+ ++++
Sbjct: 576 WAYGGFMTTNLMLTHGDVFKVGVAGGPVIDWNRYEIMYGERYFDAPQENPEGYDAANLLK 635
Query: 479 HVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYM 538
+KG+L+L+HG ID V ++H+ ++A V AR + ++P H DR+++
Sbjct: 636 RAGDLKGRLMLIHGAIDPVVVWQHSLLFLDACVKARTYPDYYVYPSHEHN-VMGPDRVHL 694
Query: 539 EERIWEFI 546
E I +
Sbjct: 695 YETITRYF 702
>pdb|2D5L|A Chain A, Crystal Structure Of Prolyl Tripeptidyl Aminopeptidase
From Porphyromonas Gingivalis
pdb|2EEP|A Chain A, Prolyl Tripeptidyl Aminopeptidase Complexed With An
Inhibitor
Length = 706
Score = 208 bits (529), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 157/548 (28%), Positives = 247/548 (45%), Gaps = 37/548 (6%)
Query: 6 GYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVS 65
G +WS +AF ++D S + I+ S+ YP AG + V +G+
Sbjct: 185 GTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPL---YYPMAGTPSHHVTVGIYH 241
Query: 66 AAGGPVSWMDLQCGGTDQNYDEEYLARVNWM-HGNILTAQVLNRSQTKLKVLKFDIKTGQ 124
A G + LQ G E++L ++W NIL +NR+Q + KV +D +TG+
Sbjct: 242 LATGKTVY--LQTG----EPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGR 295
Query: 125 R-KVILVEELDSWVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTCLGPIT 183
+ + VE +V T L + FIW S + G+ HLYL+D G + +T
Sbjct: 296 FVRTLFVETDKHYVEPLHPLTFLPGSNNQ----FIWQSRRDGWNHLYLYDTTGRLIRQVT 351
Query: 184 EGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTNGKGKHV 243
+G+W V G + ++YF T PLE H YC + LT G H
Sbjct: 352 KGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGKTK------DLTPESGMHR 405
Query: 244 AVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLYEQPLT---VPRIKRLQLEPPDI 300
L + +D S P ++ + ++ GS L + P T +P I+
Sbjct: 406 TQLSPDGSAIIDIFQSPTVPRKVTVTNIGKGSHTLLEAKNPDTGYAMPEIR--------T 457
Query: 301 VQIQANDG-TVLYGALYKPDESRYGPPP-YKTLISVYGGPCVQLVCDSWINTVDMRAQYL 358
I A DG T LY L P + P Y ++ VYGGP QLV +W ++V Y+
Sbjct: 458 GTIMAADGQTPLYYKLTMP--LHFDPAKKYPVIVYVYGGPHAQLVTKTWRSSVGGWDIYM 515
Query: 359 RSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIXXXX 418
KG V+ +D+RG+A RG FE I G+ + DQ+ G ++L Q I
Sbjct: 516 AQKGYAVFTVDSRGSANRGAAFEQVIHRRLGQTEMADQMCGVDFLKSQSWVDADRIGVHG 575
Query: 419 XXXXXXXXAITLARFPDVFQCAVSGAPVTSWDGYDTFYTEKYMGLPSEDPVGYEYSSVMH 478
+ DVF+ V+G PV W+ Y+ Y E+Y P E+P GY+ ++++
Sbjct: 576 WSYGGFMTTNLMLTHGDVFKVGVAGGPVIDWNRYEIMYGERYFDAPQENPEGYDAANLLK 635
Query: 479 HVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYM 538
+KG+L+L+HG ID V ++H+ ++A V AR + ++P H DR+++
Sbjct: 636 RAGDLKGRLMLIHGAIDPVVVWQHSLLFLDACVKARTYPDYYVYPSHEHN-VMGPDRVHL 694
Query: 539 EERIWEFI 546
E I +
Sbjct: 695 YETITRYF 702
>pdb|2Z3W|A Chain A, Prolyl Tripeptidyl Aminopeptidase Mutant E636a
pdb|2Z3Z|A Chain A, Prolyl Tripeptidyl Aminopeptidase Mutant E636a Complexd
With An Inhibitor
Length = 706
Score = 206 bits (525), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 157/548 (28%), Positives = 246/548 (44%), Gaps = 37/548 (6%)
Query: 6 GYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVS 65
G +WS +AF ++D S + I+ S+ YP AG + V +G+
Sbjct: 185 GTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPL---YYPMAGTPSHHVTVGIYH 241
Query: 66 AAGGPVSWMDLQCGGTDQNYDEEYLARVNWM-HGNILTAQVLNRSQTKLKVLKFDIKTGQ 124
A G + LQ G E++L ++W NIL +NR+Q + KV +D +TG+
Sbjct: 242 LATGKTVY--LQTG----EPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGR 295
Query: 125 R-KVILVEELDSWVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTCLGPIT 183
+ + VE +V T L + FIW S + G+ HLYL+D G + +T
Sbjct: 296 FVRTLFVETDKHYVEPLHPLTFLPGSNNQ----FIWQSRRDGWNHLYLYDTTGRLIRQVT 351
Query: 184 EGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTNGKGKHV 243
+G+W V G + ++YF T PLE H YC + LT G H
Sbjct: 352 KGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGKTK------DLTPESGMHR 405
Query: 244 AVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLYEQPLT---VPRIKRLQLEPPDI 300
L + +D S P ++ + ++ GS L + P T +P I+
Sbjct: 406 TQLSPDGSAIIDIFQSPTVPRKVTVTNIGKGSHTLLEAKNPDTGYAMPEIR--------T 457
Query: 301 VQIQANDG-TVLYGALYKPDESRYGPPP-YKTLISVYGGPCVQLVCDSWINTVDMRAQYL 358
I A DG T LY L P + P Y ++ VYGGP QLV +W ++V Y+
Sbjct: 458 GTIMAADGQTPLYYKLTMP--LHFDPAKKYPVIVYVYGGPHAQLVTKTWRSSVGGWDIYM 515
Query: 359 RSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIXXXX 418
KG V+ +D+RG+A RG FE I G+ + DQ+ G ++L Q I
Sbjct: 516 AQKGYAVFTVDSRGSANRGAAFEQVIHRRLGQTEMADQMCGVDFLKSQSWVDADRIGVHG 575
Query: 419 XXXXXXXXAITLARFPDVFQCAVSGAPVTSWDGYDTFYTEKYMGLPSEDPVGYEYSSVMH 478
+ DVF+ V+G PV W+ Y Y E+Y P E+P GY+ ++++
Sbjct: 576 WSYGGFMTTNLMLTHGDVFKVGVAGGPVIDWNRYAIMYGERYFDAPQENPEGYDAANLLK 635
Query: 479 HVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYM 538
+KG+L+L+HG ID V ++H+ ++A V AR + ++P H DR+++
Sbjct: 636 RAGDLKGRLMLIHGAIDPVVVWQHSLLFLDACVKARTYPDYYVYPSHEHN-VMGPDRVHL 694
Query: 539 EERIWEFI 546
E I +
Sbjct: 695 YETITRYF 702
>pdb|1Z68|A Chain A, Crystal Structure Of Human Fibroblast Activation Protein
Alpha
pdb|1Z68|B Chain B, Crystal Structure Of Human Fibroblast Activation Protein
Alpha
Length = 719
Score = 147 bits (371), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 140/560 (25%), Positives = 244/560 (43%), Gaps = 70/560 (12%)
Query: 4 KTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGV 63
K WWS + KF+A+ + + ++IP + G + YP AGA N VR+ +
Sbjct: 171 KYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTI--NIPYPKAGAKNPVVRIFI 228
Query: 64 VS----AAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFD 119
+ A GP + + +Y Y + + W+ + Q L R Q + D
Sbjct: 229 IDTTYPAYVGPQE-VPVPAMIASSDY---YFSWLTWVTDERVCLQWLKRVQNVSVLSICD 284
Query: 120 IKTGQRKVILVEELDSWVNLHDCFTP---LDKGVTKYSGGFIWA---------------S 161
+ E+ +W DC +++ T ++GGF + S
Sbjct: 285 FR---------EDWQTW----DCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFS 331
Query: 162 EKTGFRHL-YLHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAK 220
+K G++H+ Y+ D + IT G W I V + S + P ++Y
Sbjct: 332 DKDGYKHIHYIKDTVENAI-QITSGKWEAINIFRVTQDSLFYSSNEFEEYPGRRNIYRIS 390
Query: 221 L--YPDWNHTLEAPVKLTNGKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSL-- 276
+ YP + ++ + + ++ ++ + P I + +L DG
Sbjct: 391 IGSYPPSKKCVTCHLR-----KERCQYYTASFSDYAKYYALVCYGPGIPISTLHDGRTDQ 445
Query: 277 -VLPLYEQPLTVPRIKRLQLEPPDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVY 335
+ L E +K +QL +I +++ ++ T+ Y + P R Y LI VY
Sbjct: 446 EIKILEENKELENALKNIQLPKEEIKKLEVDEITLWYKMILPPQFDR--SKKYPLLIQVY 503
Query: 336 GGPCVQLV----CDSWINTVDMRAQYLRSK-GILVWKLDNRGTARRGLKFEASIKHNCGR 390
GGPC Q V +WI+ YL SK G+++ +D RGTA +G K ++ G
Sbjct: 504 GGPCSQSVRSVFAVNWIS-------YLASKEGMVIALVDGRGTAFQGDKLLYAVYRKLGV 556
Query: 391 IDAEDQLTGAEWLIKQGLAKVGHIXXXXXXXXXXXXAITLARFPDVFQCAVSGAPVTSWD 450
+ EDQ+T I+ G I ++ LA +F+C ++ APV+SW+
Sbjct: 557 YEVEDQITAVRKFIEMGFIDEKRIAIWGWSYGGYVSSLALASGTGLFKCGIAVAPVSSWE 616
Query: 451 GYDTFYTEKYMGLPSEDP--VGYEYSSVMHHVHKMKG-KLLLVHGMIDENVHFRHTARLI 507
Y + YTE++MGLP++D Y+ S+VM + LL+HG D+NVHF+++A++
Sbjct: 617 YYASVYTERFMGLPTKDDNLEHYKNSTVMARAEYFRNVDYLLIHGTADDNVHFQNSAQIA 676
Query: 508 NALVAARKPYEILIFPDERH 527
ALV A+ ++ + + D+ H
Sbjct: 677 KALVNAQVDFQAMWYSDQNH 696
>pdb|1N1M|A Chain A, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH AN
INHIBITOR
pdb|1N1M|B Chain B, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH AN
INHIBITOR
pdb|1NU6|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv
(Dpp-Iv)
pdb|1NU6|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv
(Dpp-Iv)
pdb|1NU8|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv
(Dpp-Iv) In Complex With Diprotin A (Ili)
pdb|1NU8|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv
(Dpp-Iv) In Complex With Diprotin A (Ili)
pdb|1TK3|A Chain A, Crystal Structure Of Human Apo Dipeptidyl Peptidase IvCD26
pdb|1TK3|B Chain B, Crystal Structure Of Human Apo Dipeptidyl Peptidase IvCD26
pdb|1TKR|A Chain A, Human Dipeptidyl Peptidase IvCD26 INHIBITED WITH
DIISOPROPYL Fluorophosphate
pdb|1TKR|B Chain B, Human Dipeptidyl Peptidase IvCD26 INHIBITED WITH
DIISOPROPYL Fluorophosphate
pdb|1W1I|A Chain A, Crystal Structure Of Dipeptidyl Peptidase Iv (Dppiv Or
Cd26) In Complex With Adenosine Deaminase
pdb|1W1I|B Chain B, Crystal Structure Of Dipeptidyl Peptidase Iv (Dppiv Or
Cd26) In Complex With Adenosine Deaminase
pdb|1W1I|C Chain C, Crystal Structure Of Dipeptidyl Peptidase Iv (Dppiv Or
Cd26) In Complex With Adenosine Deaminase
pdb|1W1I|D Chain D, Crystal Structure Of Dipeptidyl Peptidase Iv (Dppiv Or
Cd26) In Complex With Adenosine Deaminase
pdb|1RWQ|A Chain A, Human Dipeptidyl Peptidase Iv In Complex With
5-Aminomethyl-6-(2,4-
Dichloro-Phenyl)-2-(3,
5-Dimethoxy-Phenyl)-Pyrimidin-4-Ylamine
pdb|1RWQ|B Chain B, Human Dipeptidyl Peptidase Iv In Complex With
5-Aminomethyl-6-(2,4-
Dichloro-Phenyl)-2-(3,
5-Dimethoxy-Phenyl)-Pyrimidin-4-Ylamine
pdb|2BGN|A Chain A, Hiv-1 Tat Protein Derived N-Terminal Nonapeptide Trp2-Tat
(1-9) Bound To The Active Site Of Dipeptidyl Peptidase
Iv (Cd26)
pdb|2BGN|B Chain B, Hiv-1 Tat Protein Derived N-Terminal Nonapeptide Trp2-Tat
(1-9) Bound To The Active Site Of Dipeptidyl Peptidase
Iv (Cd26)
pdb|2BGN|C Chain C, Hiv-1 Tat Protein Derived N-Terminal Nonapeptide Trp2-Tat
(1-9) Bound To The Active Site Of Dipeptidyl Peptidase
Iv (Cd26)
pdb|2BGN|D Chain D, Hiv-1 Tat Protein Derived N-Terminal Nonapeptide Trp2-Tat
(1-9) Bound To The Active Site Of Dipeptidyl Peptidase
Iv (Cd26)
pdb|2AJL|I Chain I, X-Ray Structure Of Novel Biaryl-Based Dipeptidyl Peptidase
Iv Inhibitor
pdb|2AJL|J Chain J, X-Ray Structure Of Novel Biaryl-Based Dipeptidyl Peptidase
Iv Inhibitor
pdb|2BUB|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Cd26)
In Complex With A Reversed Amide Inhibitor
pdb|2BUB|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Cd26)
In Complex With A Reversed Amide Inhibitor
pdb|2OGZ|A Chain A, Crystal Structure Of Dpp-Iv Complexed With Lilly Aryl
Ketone Inhibitor
pdb|2OGZ|B Chain B, Crystal Structure Of Dpp-Iv Complexed With Lilly Aryl
Ketone Inhibitor
pdb|2OQI|A Chain A, Human Dipeptidyl Peptidase Iv (Dpp4) With Piperidinone-
Constrained Phenethylamine
pdb|2OQI|B Chain B, Human Dipeptidyl Peptidase Iv (Dpp4) With Piperidinone-
Constrained Phenethylamine
pdb|2OQI|C Chain C, Human Dipeptidyl Peptidase Iv (Dpp4) With Piperidinone-
Constrained Phenethylamine
pdb|2OQI|D Chain D, Human Dipeptidyl Peptidase Iv (Dpp4) With Piperidinone-
Constrained Phenethylamine
pdb|2OLE|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
Complex With Cyclic Hydrazine Derivatives
pdb|2OLE|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
Complex With Cyclic Hydrazine Derivatives
pdb|3BJM|A Chain A, Crystal Structure Of Human Dpp-Iv In Complex With (1s,3s,
5s)-2-[(2s)-
2-Amino-2-(3-Hydroxytricyclo[3.3.1.13,7]dec-1-
Yl)acetyl]-2- Azabicyclo[3.1.0]hexane-3-Carbonitrile
(Cas), (1s,3s,5s)-2-((2s)-2-
Amino-2-(3-Hydroxyadamantan-1-
Yl)acetyl)-2-Azabicyclo[3.1.0]hexane- 3-Carbonitrile
(Iupac), Or Bms-477118
pdb|3BJM|B Chain B, Crystal Structure Of Human Dpp-Iv In Complex With (1s,3s,
5s)-2-[(2s)-
2-Amino-2-(3-Hydroxytricyclo[3.3.1.13,7]dec-1-
Yl)acetyl]-2- Azabicyclo[3.1.0]hexane-3-Carbonitrile
(Cas), (1s,3s,5s)-2-((2s)-2-
Amino-2-(3-Hydroxyadamantan-1-
Yl)acetyl)-2-Azabicyclo[3.1.0]hexane- 3-Carbonitrile
(Iupac), Or Bms-477118
pdb|3EIO|A Chain A, Crystal Structure Analysis Of Dppiv Inhibitor
pdb|3EIO|B Chain B, Crystal Structure Analysis Of Dppiv Inhibitor
pdb|3H0C|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Cd26)
In Complex With A Reversed Amide Inhibitor
pdb|3H0C|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Cd26)
In Complex With A Reversed Amide Inhibitor
pdb|3KWF|A Chain A, Human Dpp-Iv With Carmegliptin
(S)-1-((2s,3s,11bs)-2-Amino-
9,10-Dimethoxy-1,3,4,6,7,11b-Hexahydro-2h-Pyrido[2,1-
A]isoquinolin-3-Yl)-4-Fluoromethyl-Pyrrolidin-2-One
pdb|3KWF|B Chain B, Human Dpp-Iv With Carmegliptin
(S)-1-((2s,3s,11bs)-2-Amino-
9,10-Dimethoxy-1,3,4,6,7,11b-Hexahydro-2h-Pyrido[2,1-
A]isoquinolin-3-Yl)-4-Fluoromethyl-Pyrrolidin-2-One
pdb|3OC0|A Chain A, Structure Of Human Dpp-Iv With Hts Hit
(2s,3s,11bs)-3-Butyl-9,10-
Dimethoxy-1,3,4,6,7,11b-Hexahydro-2h-Pyrido[2,
1-A]isoquinolin-2- Ylamine
pdb|3OC0|B Chain B, Structure Of Human Dpp-Iv With Hts Hit
(2s,3s,11bs)-3-Butyl-9,10-
Dimethoxy-1,3,4,6,7,11b-Hexahydro-2h-Pyrido[2,
1-A]isoquinolin-2- Ylamine
pdb|3KWJ|A Chain A, Strucutre Of Human Dpp-Iv With
(2s,3s,11bs)-3-(3-Fluoromethyl-Phenyl)-
9,10-Dimethoxy-1,3,4,6,7,11b-Hexahydro-2h-Pyrido[2,
1-A]isoquinolin-2- Ylamine
pdb|3KWJ|B Chain B, Strucutre Of Human Dpp-Iv With
(2s,3s,11bs)-3-(3-Fluoromethyl-Phenyl)-
9,10-Dimethoxy-1,3,4,6,7,11b-Hexahydro-2h-Pyrido[2,
1-A]isoquinolin-2- Ylamine
pdb|4DSA|A Chain A, Crystal Structure Of Dpp-iv With Compound C1
pdb|4DSA|B Chain B, Crystal Structure Of Dpp-iv With Compound C1
pdb|4DSZ|A Chain A, Crystal Structure Of Dpp-iv With Compound C2
pdb|4DSZ|B Chain B, Crystal Structure Of Dpp-iv With Compound C2
pdb|4DTC|A Chain A, Crystal Structure Of Dpp-iv With Compound C5
pdb|4DTC|B Chain B, Crystal Structure Of Dpp-iv With Compound C5
Length = 728
Score = 139 bits (351), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 137/542 (25%), Positives = 226/542 (41%), Gaps = 38/542 (7%)
Query: 8 WWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVS-- 65
WWS + F+A+ Q + +E+P S+ YP AGA N V+ VV+
Sbjct: 177 WWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTD 236
Query: 66 AAGGPVSWMDLQCGG-TDQNYDEEYLARVNWMHGNILTAQVLNRSQ--TKLKVLKFDIKT 122
+ + +Q + YL V W ++ Q L R Q + + + +D +
Sbjct: 237 SLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESS 296
Query: 123 GQRKVILVEE-----LDSWVNLHDCFTPLDKGVTKYSGGFI-WASEKTGFRHLYLHDING 176
G+ ++ + WV F P + T F S + G+RH+ I+
Sbjct: 297 GRWNCLVARQHIEMSTTGWVGR---FRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDK 353
Query: 177 TCLGPITEGDWMVEQIVGVNEASGQV--YFTGTLDG-PLESHLYCAKLYPDWNHTLEAPV 233
IT+G W +++G+ + Y + G P +LY +L D+
Sbjct: 354 KDCTFITKGTW---EVIGIEALTSDYLYYISNEYKGMPGGRNLYKIQL-SDYTKVTCLSC 409
Query: 234 KLTNGKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLYEQPLTVPRIKRL 293
+L + ++ +V + S P L S + + L + ++ +
Sbjct: 410 ELNPERCQYYSVSFSKEAKYYQLRCSGPGLPLYTLHSSVNDKGLRVLEDNSALDKMLQNV 469
Query: 294 QLEPPDIVQIQANDGTVLYGALYKP--DESRYGPPPYKTLISVYGGPCVQLVCDSWINTV 351
Q+ + I N+ Y + P D+S+ Y L+ VY GPC Q +TV
Sbjct: 470 QMPSKKLDFIILNETKFWYQMILPPHFDKSK----KYPLLLDVYAGPCSQKA-----DTV 520
Query: 352 DMR--AQYLRS-KGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGL 408
A YL S + I+V D RG+ +G K +I G + EDQ+ A K G
Sbjct: 521 FRLNWATYLASTENIIVASFDGRGSGYQGDKIMHAINRRLGTFEVEDQIEAARQFSKMGF 580
Query: 409 AKVGHIXXXXXXXXXXXXAITLARFPDVFQCAVSGAPVTSWDGYDTFYTEKYMGLPS-ED 467
I ++ L VF+C ++ APV+ W+ YD+ YTE+YMGLP+ ED
Sbjct: 581 VDNKRIAIWGWSYGGYVTSMVLGSGSGVFKCGIAVAPVSRWEYYDSVYTERYMGLPTPED 640
Query: 468 PVG-YEYSSVMHHVHKMKG-KLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDE 525
+ Y S+VM K + LL+HG D+NVHF+ +A++ ALV ++ + + DE
Sbjct: 641 NLDHYRNSTVMSRAENFKQVEYLLIHGTADDNVHFQQSAQISKALVDVGVDFQAMWYTDE 700
Query: 526 RH 527
H
Sbjct: 701 DH 702
>pdb|2RGU|A Chain A, Crystal Structure Of Complex Of Human Dpp4 And Inhibitor
pdb|2RGU|B Chain B, Crystal Structure Of Complex Of Human Dpp4 And Inhibitor
Length = 734
Score = 139 bits (351), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 137/542 (25%), Positives = 226/542 (41%), Gaps = 38/542 (7%)
Query: 8 WWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVS-- 65
WWS + F+A+ Q + +E+P S+ YP AGA N V+ VV+
Sbjct: 177 WWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTD 236
Query: 66 AAGGPVSWMDLQCGG-TDQNYDEEYLARVNWMHGNILTAQVLNRSQ--TKLKVLKFDIKT 122
+ + +Q + YL V W ++ Q L R Q + + + +D +
Sbjct: 237 SLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESS 296
Query: 123 GQRKVILVEE-----LDSWVNLHDCFTPLDKGVTKYSGGFI-WASEKTGFRHLYLHDING 176
G+ ++ + WV F P + T F S + G+RH+ I+
Sbjct: 297 GRWNCLVARQHIEMSTTGWVGR---FRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDK 353
Query: 177 TCLGPITEGDWMVEQIVGVNEASGQV--YFTGTLDG-PLESHLYCAKLYPDWNHTLEAPV 233
IT+G W +++G+ + Y + G P +LY +L D+
Sbjct: 354 KDCTFITKGTW---EVIGIEALTSDYLYYISNEYKGMPGGRNLYKIQL-SDYTKVTCLSC 409
Query: 234 KLTNGKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLYEQPLTVPRIKRL 293
+L + ++ +V + S P L S + + L + ++ +
Sbjct: 410 ELNPERCQYYSVSFSKEAKYYQLRCSGPGLPLYTLHSSVNDKGLRVLEDNSALDKMLQNV 469
Query: 294 QLEPPDIVQIQANDGTVLYGALYKP--DESRYGPPPYKTLISVYGGPCVQLVCDSWINTV 351
Q+ + I N+ Y + P D+S+ Y L+ VY GPC Q +TV
Sbjct: 470 QMPSKKLDFIILNETKFWYQMILPPHFDKSK----KYPLLLDVYAGPCSQKA-----DTV 520
Query: 352 DMR--AQYLRS-KGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGL 408
A YL S + I+V D RG+ +G K +I G + EDQ+ A K G
Sbjct: 521 FRLNWATYLASTENIIVASFDGRGSGYQGDKIMHAINRRLGTFEVEDQIEAARQFSKMGF 580
Query: 409 AKVGHIXXXXXXXXXXXXAITLARFPDVFQCAVSGAPVTSWDGYDTFYTEKYMGLPS-ED 467
I ++ L VF+C ++ APV+ W+ YD+ YTE+YMGLP+ ED
Sbjct: 581 VDNKRIAIWGWSYGGYVTSMVLGSGSGVFKCGIAVAPVSRWEYYDSVYTERYMGLPTPED 640
Query: 468 PVG-YEYSSVMHHVHKMKG-KLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDE 525
+ Y S+VM K + LL+HG D+NVHF+ +A++ ALV ++ + + DE
Sbjct: 641 NLDHYRNSTVMSRAENFKQVEYLLIHGTADDNVHFQQSAQISKALVDVGVDFQAMWYTDE 700
Query: 526 RH 527
H
Sbjct: 701 DH 702
>pdb|2JID|A Chain A, Human Dipeptidyl Peptidase Iv In Complex With 1-(3,4-
Dimethoxy-Phenyl)-3-M-Tolyl-Piperidine-4-Ylamine
pdb|2JID|B Chain B, Human Dipeptidyl Peptidase Iv In Complex With 1-(3,4-
Dimethoxy-Phenyl)-3-M-Tolyl-Piperidine-4-Ylamine
Length = 736
Score = 139 bits (351), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 138/543 (25%), Positives = 227/543 (41%), Gaps = 40/543 (7%)
Query: 8 WWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVS-- 65
WWS + F+A+ Q + +E+P S+ YP AGA N V+ VV+
Sbjct: 185 WWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTD 244
Query: 66 AAGGPVSWMDLQCGG-TDQNYDEEYLARVNWMHGNILTAQVLNRSQ--TKLKVLKFDIKT 122
+ + +Q + YL V W ++ Q L R Q + + + +D +
Sbjct: 245 SLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESS 304
Query: 123 GQRKVILVEE-----LDSWVNLHDCFTPLDKGVTKYSGGFI-WASEKTGFRHLYLHDING 176
G+ ++ + WV F P + T F S + G+RH+ I+
Sbjct: 305 GRWNCLVARQHIEMSTTGWVGR---FRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDK 361
Query: 177 TCLGPITEGDWMVEQIVGVNEASGQV--YFTGTLDG-PLESHLYCAKLYPDWNHTLEAPV 233
IT+G W +++G+ + Y + G P +LY +L D+
Sbjct: 362 KDCTFITKGTW---EVIGIEALTSDYLYYISNEYKGMPGGRNLYKIQL-SDYTKVTCLSC 417
Query: 234 KLTNGKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLYEQPLTVPRIKRL 293
+L + ++ +V + S P L S + + L + ++ +
Sbjct: 418 ELNPERCQYYSVSFSKEAKYYQLRCSGPGLPLYTLHSSVNDKGLRVLEDNSALDKMLQNV 477
Query: 294 QLEPPDIVQIQANDGTVLYGALYKP--DESRYGPPPYKTLISVYGGPCVQLVCDSWINTV 351
Q+ + I N+ Y + P D+S+ Y L+ VY GPC Q +TV
Sbjct: 478 QMPSKKLDFIILNETKFWYQMILPPHFDKSK----KYPLLLDVYAGPCSQKA-----DTV 528
Query: 352 DMR---AQYLRS-KGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQG 407
R A YL S + I+V D RG+ +G K +I G + EDQ+ A K G
Sbjct: 529 -FRLNWATYLASTENIIVASFDGRGSGYQGDKIMHAINRRLGTFEVEDQIEAARQFSKMG 587
Query: 408 LAKVGHIXXXXXXXXXXXXAITLARFPDVFQCAVSGAPVTSWDGYDTFYTEKYMGLPS-E 466
I ++ L VF+C ++ APV+ W+ YD+ YTE+YMGLP+ E
Sbjct: 588 FVDNKRIAIWGWSYGGYVTSMVLGSGSGVFKCGIAVAPVSRWEYYDSVYTERYMGLPTPE 647
Query: 467 DPVG-YEYSSVMHHVHKMKG-KLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPD 524
D + Y S+VM K + LL+HG D+NVHF+ +A++ ALV ++ + + D
Sbjct: 648 DNLDHYRNSTVMSRAENFKQVEYLLIHGTADDNVHFQQSAQISKALVDVGVDFQAMWYTD 707
Query: 525 ERH 527
E H
Sbjct: 708 EDH 710
>pdb|2RIP|A Chain A, Structure Of Dppiv In Complex With An Inhibitor
Length = 729
Score = 139 bits (351), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 138/546 (25%), Positives = 228/546 (41%), Gaps = 40/546 (7%)
Query: 5 TGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVV 64
+ WWS + F+A+ Q + +E+P S+ YP AGA N V+ VV
Sbjct: 175 SALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVV 234
Query: 65 S--AAGGPVSWMDLQCGG-TDQNYDEEYLARVNWMHGNILTAQVLNRSQ--TKLKVLKFD 119
+ + + +Q + YL V W ++ Q L R Q + + + +D
Sbjct: 235 NTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYD 294
Query: 120 IKTGQRKVILVEE-----LDSWVNLHDCFTPLDKGVTKYSGGFI-WASEKTGFRHLYLHD 173
+G+ ++ + WV F P + T F S + G+RH+
Sbjct: 295 ESSGRWNCLVARQHIEMSTTGWVGR---FRPSEPHFTLDGNSFYKIISNEEGYRHICYFQ 351
Query: 174 INGTCLGPITEGDWMVEQIVGVNEASGQV--YFTGTLDG-PLESHLYCAKLYPDWNHTLE 230
I+ IT+G W +++G+ + Y + G P +LY +L D+
Sbjct: 352 IDKKDCTFITKGTW---EVIGIEALTSDYLYYISNEYKGMPGGRNLYKIQL-SDYTKVTC 407
Query: 231 APVKLTNGKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLYEQPLTVPRI 290
+L + ++ +V + S P L S + + L + +
Sbjct: 408 LSCELNPERCQYYSVSFSKEAKYYQLRCSGPGLPLYTLHSSVNDKGLRVLEDNSALDKML 467
Query: 291 KRLQLEPPDIVQIQANDGTVLYGALYKP--DESRYGPPPYKTLISVYGGPCVQLVCDSWI 348
+ +Q+ + I N+ Y + P D+S+ Y L+ VY GPC Q
Sbjct: 468 QNVQMPSKKLDFIILNETKFWYQMILPPHFDKSK----KYPLLLDVYAGPCSQKA----- 518
Query: 349 NTVDMR---AQYLRS-KGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLI 404
+TV R A YL S + I+V D RG+ +G K +I G + EDQ+ A
Sbjct: 519 DTV-FRLNWATYLASTENIIVASFDGRGSGYQGDKIMHAINRRLGTFEVEDQIEAARQFS 577
Query: 405 KQGLAKVGHIXXXXXXXXXXXXAITLARFPDVFQCAVSGAPVTSWDGYDTFYTEKYMGLP 464
K G I ++ L VF+C ++ APV+ W+ YD+ YTE+YMGLP
Sbjct: 578 KMGFVDNKRIAIWGWSYGGYVTSMVLGSGSGVFKCGIAVAPVSRWEYYDSVYTERYMGLP 637
Query: 465 S-EDPVG-YEYSSVMHHVHKMKG-KLLLVHGMIDENVHFRHTARLINALVAARKPYEILI 521
+ ED + Y S+VM K + LL+HG D+NVHF+ +A++ ALV ++ +
Sbjct: 638 TPEDNLDHYRNSTVMSRAENFKQVEYLLIHGTADDNVHFQQSAQISKALVDVGVDFQAMW 697
Query: 522 FPDERH 527
+ DE H
Sbjct: 698 YTDEDH 703
>pdb|1X70|A Chain A, Human Dipeptidyl Peptidase Iv In Complex With A Beta Amino
Acid Inhibitor
pdb|1X70|B Chain B, Human Dipeptidyl Peptidase Iv In Complex With A Beta Amino
Acid Inhibitor
pdb|2FJP|A Chain A, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH AN
INHIBITOR
pdb|2FJP|B Chain B, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH AN
INHIBITOR
pdb|2HHA|A Chain A, The Structure Of Dpp4 In Complex With An Oxadiazole
Inhibitor
pdb|2HHA|B Chain B, The Structure Of Dpp4 In Complex With An Oxadiazole
Inhibitor
pdb|2IIT|A Chain A, Human Dipeptidyl Peptidase 4 In Complex With A
Diazepan-2-one Inhibitor
pdb|2IIT|B Chain B, Human Dipeptidyl Peptidase 4 In Complex With A
Diazepan-2-one Inhibitor
pdb|2IIV|A Chain A, Human Dipeptidyl Peptidase 4 In Complex With A
Diazepan-2-One Inhibitor
pdb|2IIV|B Chain B, Human Dipeptidyl Peptidase 4 In Complex With A
Diazepan-2-One Inhibitor
pdb|2OPH|A Chain A, Human Dipeptidyl Peptidase Iv In Complex With An Alpha
Amino Acid Inhibitor
pdb|2OPH|B Chain B, Human Dipeptidyl Peptidase Iv In Complex With An Alpha
Amino Acid Inhibitor
pdb|2P8S|A Chain A, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH A
CYCLOHEXALAMINE Inhibitor
pdb|2P8S|B Chain B, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH A
CYCLOHEXALAMINE Inhibitor
pdb|2QOE|A Chain A, Human Dipeptidyl Peptidase Iv In Complex With A
Triazolopiperazine- Based Beta Amino Acid Inhibitor
pdb|2QOE|B Chain B, Human Dipeptidyl Peptidase Iv In Complex With A
Triazolopiperazine- Based Beta Amino Acid Inhibitor
pdb|3C43|A Chain A, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH A
FLOUROOLEFIN Inhibitor
pdb|3C43|B Chain B, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH A
FLOUROOLEFIN Inhibitor
pdb|3C45|A Chain A, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH A
FLUOROOLEFIN Inhibitor
pdb|3C45|B Chain B, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH A
FLUOROOLEFIN Inhibitor
pdb|3D4L|A Chain A, Human Dipeptidyl Peptidase Iv/cd26 In Complex With A Novel
Inhibitor
pdb|3D4L|B Chain B, Human Dipeptidyl Peptidase Iv/cd26 In Complex With A Novel
Inhibitor
pdb|2QKY|A Chain A, Complex Structure Of Dipeptidyl Peptidase Iv And A
Oxadiazolyl Ketone
pdb|2QKY|B Chain B, Complex Structure Of Dipeptidyl Peptidase Iv And A
Oxadiazolyl Ketone
pdb|2QKY|C Chain C, Complex Structure Of Dipeptidyl Peptidase Iv And A
Oxadiazolyl Ketone
pdb|2QKY|D Chain D, Complex Structure Of Dipeptidyl Peptidase Iv And A
Oxadiazolyl Ketone
pdb|3HAB|A Chain A, The Structure Of Dpp4 In Complex With Piperidine Fused
Benzimidazole 25
pdb|3HAB|B Chain B, The Structure Of Dpp4 In Complex With Piperidine Fused
Benzimidazole 25
pdb|3HAC|A Chain A, The Structure Of Dpp-4 In Complex With Piperidine Fused
Imidazopyridine 34
pdb|3HAC|B Chain B, The Structure Of Dpp-4 In Complex With Piperidine Fused
Imidazopyridine 34
Length = 728
Score = 139 bits (351), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 137/542 (25%), Positives = 226/542 (41%), Gaps = 38/542 (7%)
Query: 8 WWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVS-- 65
WWS + F+A+ Q + +E+P S+ YP AGA N V+ VV+
Sbjct: 177 WWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTD 236
Query: 66 AAGGPVSWMDLQCGG-TDQNYDEEYLARVNWMHGNILTAQVLNRSQ--TKLKVLKFDIKT 122
+ + +Q + YL V W ++ Q L R Q + + + +D +
Sbjct: 237 SLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESS 296
Query: 123 GQRKVILVEE-----LDSWVNLHDCFTPLDKGVTKYSGGFI-WASEKTGFRHLYLHDING 176
G+ ++ + WV F P + T F S + G+RH+ I+
Sbjct: 297 GRWNCLVARQHIEMSTTGWVGR---FRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDK 353
Query: 177 TCLGPITEGDWMVEQIVGVNEASGQV--YFTGTLDG-PLESHLYCAKLYPDWNHTLEAPV 233
IT+G W +++G+ + Y + G P +LY +L D+
Sbjct: 354 KDCTFITKGTW---EVIGIEALTSDYLYYISNEYKGMPGGRNLYKIQL-SDYTKVTCLSC 409
Query: 234 KLTNGKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLYEQPLTVPRIKRL 293
+L + ++ +V + S P L S + + L + ++ +
Sbjct: 410 ELNPERCQYYSVSFSKEAKYYQLRCSGPGLPLYTLHSSVNDKGLRVLEDNSALDKMLQNV 469
Query: 294 QLEPPDIVQIQANDGTVLYGALYKP--DESRYGPPPYKTLISVYGGPCVQLVCDSWINTV 351
Q+ + I N+ Y + P D+S+ Y L+ VY GPC Q +TV
Sbjct: 470 QMPSKKLDFIILNETKFWYQMILPPHFDKSK----KYPLLLDVYAGPCSQKA-----DTV 520
Query: 352 DMR--AQYLRS-KGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGL 408
A YL S + I+V D RG+ +G K +I G + EDQ+ A K G
Sbjct: 521 FRLNWATYLASTENIIVASFDGRGSGYQGDKIMHAINRRLGTFEVEDQIEAARQFSKMGF 580
Query: 409 AKVGHIXXXXXXXXXXXXAITLARFPDVFQCAVSGAPVTSWDGYDTFYTEKYMGLPS-ED 467
I ++ L VF+C ++ APV+ W+ YD+ YTE+YMGLP+ ED
Sbjct: 581 VDNKRIAIWGWSYGGYVTSMVLGSGSGVFKCGIAVAPVSRWEYYDSVYTERYMGLPTPED 640
Query: 468 PVG-YEYSSVMHHVHKMKG-KLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDE 525
+ Y S+VM K + LL+HG D+NVHF+ +A++ ALV ++ + + DE
Sbjct: 641 NLDHYRNSTVMSRAENFKQVEYLLIHGTADDNVHFQQSAQISKALVDVGVDFQAMWYTDE 700
Query: 526 RH 527
H
Sbjct: 701 DH 702
>pdb|1R9N|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv In
Complex With A Decapeptide (Tnpy) At 2.3 Ang. Resolution
pdb|1R9N|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv In
Complex With A Decapeptide (Tnpy) At 2.3 Ang. Resolution
pdb|1R9N|C Chain C, Crystal Structure Of Human Dipeptidyl Peptidase Iv In
Complex With A Decapeptide (Tnpy) At 2.3 Ang. Resolution
pdb|1R9N|D Chain D, Crystal Structure Of Human Dipeptidyl Peptidase Iv In
Complex With A Decapeptide (Tnpy) At 2.3 Ang. Resolution
Length = 739
Score = 139 bits (351), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 138/546 (25%), Positives = 228/546 (41%), Gaps = 40/546 (7%)
Query: 5 TGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVV 64
+ WWS + F+A+ Q + +E+P S+ YP AGA N V+ VV
Sbjct: 185 SALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVV 244
Query: 65 S--AAGGPVSWMDLQCGG-TDQNYDEEYLARVNWMHGNILTAQVLNRSQ--TKLKVLKFD 119
+ + + +Q + YL V W ++ Q L R Q + + + +D
Sbjct: 245 NTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYD 304
Query: 120 IKTGQRKVILVEE-----LDSWVNLHDCFTPLDKGVTKYSGGFI-WASEKTGFRHLYLHD 173
+G+ ++ + WV F P + T F S + G+RH+
Sbjct: 305 ESSGRWNCLVARQHIEMSTTGWVGR---FRPSEPHFTLDGNSFYKIISNEEGYRHICYFQ 361
Query: 174 INGTCLGPITEGDWMVEQIVGVNEASGQV--YFTGTLDG-PLESHLYCAKLYPDWNHTLE 230
I+ IT+G W +++G+ + Y + G P +LY +L D+
Sbjct: 362 IDKKDCTFITKGTW---EVIGIEALTSDYLYYISNEYKGMPGGRNLYKIQL-SDYTKVTC 417
Query: 231 APVKLTNGKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLYEQPLTVPRI 290
+L + ++ +V + S P L S + + L + +
Sbjct: 418 LSCELNPERCQYYSVSFSKEAKYYQLRCSGPGLPLYTLHSSVNDKGLRVLEDNSALDKML 477
Query: 291 KRLQLEPPDIVQIQANDGTVLYGALYKP--DESRYGPPPYKTLISVYGGPCVQLVCDSWI 348
+ +Q+ + I N+ Y + P D+S+ Y L+ VY GPC Q
Sbjct: 478 QNVQMPSKKLDFIILNETKFWYQMILPPHFDKSK----KYPLLLDVYAGPCSQKA----- 528
Query: 349 NTVDMR---AQYLRS-KGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLI 404
+TV R A YL S + I+V D RG+ +G K +I G + EDQ+ A
Sbjct: 529 DTV-FRLNWATYLASTENIIVASFDGRGSGYQGDKIMHAINRRLGTFEVEDQIEAARQFS 587
Query: 405 KQGLAKVGHIXXXXXXXXXXXXAITLARFPDVFQCAVSGAPVTSWDGYDTFYTEKYMGLP 464
K G I ++ L VF+C ++ APV+ W+ YD+ YTE+YMGLP
Sbjct: 588 KMGFVDNKRIAIWGWSYGGYVTSMVLGSGSGVFKCGIAVAPVSRWEYYDSVYTERYMGLP 647
Query: 465 S-EDPVG-YEYSSVMHHVHKMKG-KLLLVHGMIDENVHFRHTARLINALVAARKPYEILI 521
+ ED + Y S+VM K + LL+HG D+NVHF+ +A++ ALV ++ +
Sbjct: 648 TPEDNLDHYRNSTVMSRAENFKQVEYLLIHGTADDNVHFQQSAQISKALVDVGVDFQAMW 707
Query: 522 FPDERH 527
+ DE H
Sbjct: 708 YTDEDH 713
>pdb|2BGR|A Chain A, Crystal Structure Of Hiv-1 Tat Derived Nonapeptides
Tat(1-9) Bound To The Active Site Of Dipeptidyl
Peptidase Iv (Cd26)
pdb|2BGR|B Chain B, Crystal Structure Of Hiv-1 Tat Derived Nonapeptides
Tat(1-9) Bound To The Active Site Of Dipeptidyl
Peptidase Iv (Cd26)
Length = 738
Score = 139 bits (351), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 138/543 (25%), Positives = 227/543 (41%), Gaps = 40/543 (7%)
Query: 8 WWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVS-- 65
WWS + F+A+ Q + +E+P S+ YP AGA N V+ VV+
Sbjct: 187 WWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTD 246
Query: 66 AAGGPVSWMDLQCGG-TDQNYDEEYLARVNWMHGNILTAQVLNRSQ--TKLKVLKFDIKT 122
+ + +Q + YL V W ++ Q L R Q + + + +D +
Sbjct: 247 SLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESS 306
Query: 123 GQRKVILVEE-----LDSWVNLHDCFTPLDKGVTKYSGGFI-WASEKTGFRHLYLHDING 176
G+ ++ + WV F P + T F S + G+RH+ I+
Sbjct: 307 GRWNCLVARQHIEMSTTGWVGR---FRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDK 363
Query: 177 TCLGPITEGDWMVEQIVGVNEASGQV--YFTGTLDG-PLESHLYCAKLYPDWNHTLEAPV 233
IT+G W +++G+ + Y + G P +LY +L D+
Sbjct: 364 KDCTFITKGTW---EVIGIEALTSDYLYYISNEYKGMPGGRNLYKIQL-SDYTKVTCLSC 419
Query: 234 KLTNGKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLYEQPLTVPRIKRL 293
+L + ++ +V + S P L S + + L + ++ +
Sbjct: 420 ELNPERCQYYSVSFSKEAKYYQLRCSGPGLPLYTLHSSVNDKGLRVLEDNSALDKMLQNV 479
Query: 294 QLEPPDIVQIQANDGTVLYGALYKP--DESRYGPPPYKTLISVYGGPCVQLVCDSWINTV 351
Q+ + I N+ Y + P D+S+ Y L+ VY GPC Q +TV
Sbjct: 480 QMPSKKLDFIILNETKFWYQMILPPHFDKSK----KYPLLLDVYAGPCSQKA-----DTV 530
Query: 352 DMR---AQYLRS-KGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQG 407
R A YL S + I+V D RG+ +G K +I G + EDQ+ A K G
Sbjct: 531 -FRLNWATYLASTENIIVASFDGRGSGYQGDKIMHAINRRLGTFEVEDQIEAARQFSKMG 589
Query: 408 LAKVGHIXXXXXXXXXXXXAITLARFPDVFQCAVSGAPVTSWDGYDTFYTEKYMGLPS-E 466
I ++ L VF+C ++ APV+ W+ YD+ YTE+YMGLP+ E
Sbjct: 590 FVDNKRIAIWGWSYGGYVTSMVLGSGSGVFKCGIAVAPVSRWEYYDSVYTERYMGLPTPE 649
Query: 467 DPVG-YEYSSVMHHVHKMKG-KLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPD 524
D + Y S+VM K + LL+HG D+NVHF+ +A++ ALV ++ + + D
Sbjct: 650 DNLDHYRNSTVMSRAENFKQVEYLLIHGTADDNVHFQQSAQISKALVDVGVDFQAMWYTD 709
Query: 525 ERH 527
E H
Sbjct: 710 EDH 712
>pdb|2ONC|A Chain A, Crystal Structure Of Human Dpp-4
pdb|2ONC|B Chain B, Crystal Structure Of Human Dpp-4
pdb|2ONC|C Chain C, Crystal Structure Of Human Dpp-4
pdb|2ONC|D Chain D, Crystal Structure Of Human Dpp-4
Length = 731
Score = 139 bits (351), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 137/545 (25%), Positives = 227/545 (41%), Gaps = 38/545 (6%)
Query: 5 TGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVV 64
+ WWS + F+A+ Q + +E+P S+ YP AGA N V+ VV
Sbjct: 177 SALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVV 236
Query: 65 S--AAGGPVSWMDLQCGG-TDQNYDEEYLARVNWMHGNILTAQVLNRSQ--TKLKVLKFD 119
+ + + +Q + YL V W ++ Q L R Q + + + +D
Sbjct: 237 NTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYD 296
Query: 120 IKTGQRKVILVEE-----LDSWVNLHDCFTPLDKGVTKYSGGFI-WASEKTGFRHLYLHD 173
+G+ ++ + WV F P + T F S + G+RH+
Sbjct: 297 ESSGRWNCLVARQHIEMSTTGWVGR---FRPSEPHFTLDGNSFYKIISNEEGYRHICYFQ 353
Query: 174 INGTCLGPITEGDWMVEQIVGVNEASGQV--YFTGTLDG-PLESHLYCAKLYPDWNHTLE 230
I+ IT+G W +++G+ + Y + G P +LY +L D+
Sbjct: 354 IDKKDCTFITKGTW---EVIGIEALTSDYLYYISNEYKGMPGGRNLYKIQL-SDYTKVTC 409
Query: 231 APVKLTNGKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLYEQPLTVPRI 290
+L + ++ +V + S P L S + + L + +
Sbjct: 410 LSCELNPERCQYYSVSFSKEAKYYQLRCSGPGLPLYTLHSSVNDKGLRVLEDNSALDKML 469
Query: 291 KRLQLEPPDIVQIQANDGTVLYGALYKP--DESRYGPPPYKTLISVYGGPCVQLVCDSWI 348
+ +Q+ + I N+ Y + P D+S+ Y L+ VY GPC Q
Sbjct: 470 QNVQMPSKKLDFIILNETKFWYQMILPPHFDKSK----KYPLLLDVYAGPCSQKA----- 520
Query: 349 NTVDMR--AQYLRS-KGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIK 405
+TV A YL S + I+V D RG+ +G K +I G + EDQ+ A K
Sbjct: 521 DTVFRLNWATYLASTENIIVASFDGRGSGYQGDKIMHAINRRLGTFEVEDQIEAARQFSK 580
Query: 406 QGLAKVGHIXXXXXXXXXXXXAITLARFPDVFQCAVSGAPVTSWDGYDTFYTEKYMGLPS 465
G I ++ L VF+C ++ APV+ W+ YD+ YTE+YMGLP+
Sbjct: 581 MGFVDNKRIAIWGWSYGGYVTSMVLGSGSGVFKCGIAVAPVSRWEYYDSVYTERYMGLPT 640
Query: 466 -EDPVG-YEYSSVMHHVHKMKG-KLLLVHGMIDENVHFRHTARLINALVAARKPYEILIF 522
ED + Y S+VM K + LL+HG D+NVHF+ +A++ ALV ++ + +
Sbjct: 641 PEDNLDHYRNSTVMSRAENFKQVEYLLIHGTADDNVHFQQSAQISKALVDVGVDFQAMWY 700
Query: 523 PDERH 527
DE H
Sbjct: 701 TDEDH 705
>pdb|3Q8W|A Chain A, A B-Aminoacyl Containing Thiazolidine Derivative And Dppiv
Complex
pdb|3Q8W|B Chain B, A B-Aminoacyl Containing Thiazolidine Derivative And Dppiv
Complex
Length = 732
Score = 139 bits (351), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 137/542 (25%), Positives = 226/542 (41%), Gaps = 38/542 (7%)
Query: 8 WWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVS-- 65
WWS + F+A+ Q + +E+P S+ YP AGA N V+ VV+
Sbjct: 177 WWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTD 236
Query: 66 AAGGPVSWMDLQCGG-TDQNYDEEYLARVNWMHGNILTAQVLNRSQ--TKLKVLKFDIKT 122
+ + +Q + YL V W ++ Q L R Q + + + +D +
Sbjct: 237 SLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESS 296
Query: 123 GQRKVILVEE-----LDSWVNLHDCFTPLDKGVTKYSGGFI-WASEKTGFRHLYLHDING 176
G+ ++ + WV F P + T F S + G+RH+ I+
Sbjct: 297 GRWNCLVARQHIEMSTTGWVGR---FRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDK 353
Query: 177 TCLGPITEGDWMVEQIVGVNEASGQV--YFTGTLDG-PLESHLYCAKLYPDWNHTLEAPV 233
IT+G W +++G+ + Y + G P +LY +L D+
Sbjct: 354 KDCTFITKGTW---EVIGIEALTSDYLYYISNEYKGMPGGRNLYKIQL-SDYTKVTCLSC 409
Query: 234 KLTNGKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLYEQPLTVPRIKRL 293
+L + ++ +V + S P L S + + L + ++ +
Sbjct: 410 ELNPERCQYYSVSFSKEAKYYQLRCSGPGLPLYTLHSSVNDKGLRVLEDNSALDKMLQNV 469
Query: 294 QLEPPDIVQIQANDGTVLYGALYKP--DESRYGPPPYKTLISVYGGPCVQLVCDSWINTV 351
Q+ + I N+ Y + P D+S+ Y L+ VY GPC Q +TV
Sbjct: 470 QMPSKKLDFIILNETKFWYQMILPPHFDKSK----KYPLLLDVYAGPCSQKA-----DTV 520
Query: 352 DMR--AQYLRS-KGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGL 408
A YL S + I+V D RG+ +G K +I G + EDQ+ A K G
Sbjct: 521 FRLNWATYLASTENIIVASFDGRGSGYQGDKIMHAINRRLGTFEVEDQIEAARQFSKMGF 580
Query: 409 AKVGHIXXXXXXXXXXXXAITLARFPDVFQCAVSGAPVTSWDGYDTFYTEKYMGLPS-ED 467
I ++ L VF+C ++ APV+ W+ YD+ YTE+YMGLP+ ED
Sbjct: 581 VDNKRIAIWGWSYGGYVTSMVLGSGSGVFKCGIAVAPVSRWEYYDSVYTERYMGLPTPED 640
Query: 468 PVG-YEYSSVMHHVHKMKG-KLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDE 525
+ Y S+VM K + LL+HG D+NVHF+ +A++ ALV ++ + + DE
Sbjct: 641 NLDHYRNSTVMSRAENFKQVEYLLIHGTADDNVHFQQSAQISKALVDVGVDFQAMWYTDE 700
Query: 526 RH 527
H
Sbjct: 701 DH 702
>pdb|2G5P|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
Complexed With Cyanopyrrolidine (C5-Pro-Pro) Inhibitor
21ac
pdb|2G5P|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
Complexed With Cyanopyrrolidine (C5-Pro-Pro) Inhibitor
21ac
pdb|2G5T|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
Complexed With Cyanopyrrolidine (C5-Pro-Pro) Inhibitor
21ag
pdb|2G5T|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
Complexed With Cyanopyrrolidine (C5-Pro-Pro) Inhibitor
21ag
pdb|2G63|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
Complexed With Cyanopyrrolidine (C5-Pro-Pro) Inhibitor
24b
pdb|2G63|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
Complexed With Cyanopyrrolidine (C5-Pro-Pro) Inhibitor
24b
pdb|2G63|C Chain C, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
Complexed With Cyanopyrrolidine (C5-Pro-Pro) Inhibitor
24b
pdb|2G63|D Chain D, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
Complexed With Cyanopyrrolidine (C5-Pro-Pro) Inhibitor
24b
pdb|2I03|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase 4 (Dpp Iv)
With Potent Alkynyl Cyanopyrrolidine (Abt-279)
pdb|2I03|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase 4 (Dpp Iv)
With Potent Alkynyl Cyanopyrrolidine (Abt-279)
pdb|2I03|C Chain C, Crystal Structure Of Human Dipeptidyl Peptidase 4 (Dpp Iv)
With Potent Alkynyl Cyanopyrrolidine (Abt-279)
pdb|2I03|D Chain D, Crystal Structure Of Human Dipeptidyl Peptidase 4 (Dpp Iv)
With Potent Alkynyl Cyanopyrrolidine (Abt-279)
pdb|2OQV|A Chain A, Human Dipeptidyl Peptidase Iv (Dpp4) With Piperidine-
Constrained Phenethylamine
pdb|2OQV|B Chain B, Human Dipeptidyl Peptidase Iv (Dpp4) With Piperidine-
Constrained Phenethylamine
pdb|2I78|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dpp
Iv) Complexed With Abt-341, A Cyclohexene-Constrained
Phenethylamine Inhibitor
pdb|2I78|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dpp
Iv) Complexed With Abt-341, A Cyclohexene-Constrained
Phenethylamine Inhibitor
pdb|2I78|C Chain C, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dpp
Iv) Complexed With Abt-341, A Cyclohexene-Constrained
Phenethylamine Inhibitor
pdb|2I78|D Chain D, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dpp
Iv) Complexed With Abt-341, A Cyclohexene-Constrained
Phenethylamine Inhibitor
pdb|2OAG|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
With Pyrrolidine-Constrained Phenethylamine 29g
pdb|2OAG|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
With Pyrrolidine-Constrained Phenethylamine 29g
pdb|2OAG|C Chain C, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
With Pyrrolidine-Constrained Phenethylamine 29g
pdb|2OAG|D Chain D, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
With Pyrrolidine-Constrained Phenethylamine 29g
Length = 726
Score = 139 bits (351), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 137/542 (25%), Positives = 226/542 (41%), Gaps = 38/542 (7%)
Query: 8 WWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVS-- 65
WWS + F+A+ Q + +E+P S+ YP AGA N V+ VV+
Sbjct: 177 WWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTD 236
Query: 66 AAGGPVSWMDLQCGG-TDQNYDEEYLARVNWMHGNILTAQVLNRSQ--TKLKVLKFDIKT 122
+ + +Q + YL V W ++ Q L R Q + + + +D +
Sbjct: 237 SLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESS 296
Query: 123 GQRKVILVEE-----LDSWVNLHDCFTPLDKGVTKYSGGFI-WASEKTGFRHLYLHDING 176
G+ ++ + WV F P + T F S + G+RH+ I+
Sbjct: 297 GRWNCLVARQHIEMSTTGWVGR---FRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDK 353
Query: 177 TCLGPITEGDWMVEQIVGVNEASGQV--YFTGTLDG-PLESHLYCAKLYPDWNHTLEAPV 233
IT+G W +++G+ + Y + G P +LY +L D+
Sbjct: 354 KDCTFITKGTW---EVIGIEALTSDYLYYISNEYKGMPGGRNLYKIQL-SDYTKVTCLSC 409
Query: 234 KLTNGKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLYEQPLTVPRIKRL 293
+L + ++ +V + S P L S + + L + ++ +
Sbjct: 410 ELNPERCQYYSVSFSKEAKYYQLRCSGPGLPLYTLHSSVNDKGLRVLEDNSALDKMLQNV 469
Query: 294 QLEPPDIVQIQANDGTVLYGALYKP--DESRYGPPPYKTLISVYGGPCVQLVCDSWINTV 351
Q+ + I N+ Y + P D+S+ Y L+ VY GPC Q +TV
Sbjct: 470 QMPSKKLDFIILNETKFWYQMILPPHFDKSK----KYPLLLDVYAGPCSQKA-----DTV 520
Query: 352 DMR--AQYLRS-KGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGL 408
A YL S + I+V D RG+ +G K +I G + EDQ+ A K G
Sbjct: 521 FRLNWATYLASTENIIVASFDGRGSGYQGDKIMHAINRRLGTFEVEDQIEAARQFSKMGF 580
Query: 409 AKVGHIXXXXXXXXXXXXAITLARFPDVFQCAVSGAPVTSWDGYDTFYTEKYMGLPS-ED 467
I ++ L VF+C ++ APV+ W+ YD+ YTE+YMGLP+ ED
Sbjct: 581 VDNKRIAIWGWSYGGYVTSMVLGSGSGVFKCGIAVAPVSRWEYYDSVYTERYMGLPTPED 640
Query: 468 PVG-YEYSSVMHHVHKMKG-KLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDE 525
+ Y S+VM K + LL+HG D+NVHF+ +A++ ALV ++ + + DE
Sbjct: 641 NLDHYRNSTVMSRAENFKQVEYLLIHGTADDNVHFQQSAQISKALVDVGVDFQAMWYTDE 700
Query: 526 RH 527
H
Sbjct: 701 DH 702
>pdb|3NOX|A Chain A, Crystal Structure Of Human Dpp-Iv In Complex With
Sa-(+)-(6-
(Aminomethyl)-5-(2,4-Dichlorophenyl)-7-Methylimidazo[1,
2-A]pyrimidin- 2-Yl)(Morpholino)methanone
pdb|3NOX|B Chain B, Crystal Structure Of Human Dpp-Iv In Complex With
Sa-(+)-(6-
(Aminomethyl)-5-(2,4-Dichlorophenyl)-7-Methylimidazo[1,
2-A]pyrimidin- 2-Yl)(Morpholino)methanone
pdb|3SWW|A Chain A, Crystal Structure Of Human Dpp-Iv In Complex With
Sa-(+)-3-
(Aminomethyl)-4-(2,
4-Dichlorophenyl)-6-(2-Methoxyphenyl)- 2-Methyl-
5h-Pyrrolo[3,4-B]pyridin-7(6h)-One
pdb|3SWW|B Chain B, Crystal Structure Of Human Dpp-Iv In Complex With
Sa-(+)-3-
(Aminomethyl)-4-(2,
4-Dichlorophenyl)-6-(2-Methoxyphenyl)- 2-Methyl-
5h-Pyrrolo[3,4-B]pyridin-7(6h)-One
pdb|3SX4|A Chain A, Crystal Structure Of Human Dpp-Iv In Complex With
Sa-(+)-3-
(Aminomethyl)-4-(2,
4-Dichlorophenyl)-6-(2-Methoxyphenyl)- 2-Methyl-
5h-Pyrrolo[3,4-B]pyridin-7(6h)-One
pdb|3SX4|B Chain B, Crystal Structure Of Human Dpp-Iv In Complex With
Sa-(+)-3-
(Aminomethyl)-4-(2,
4-Dichlorophenyl)-6-(2-Methoxyphenyl)- 2-Methyl-
5h-Pyrrolo[3,4-B]pyridin-7(6h)-One
pdb|3Q0T|A Chain A, Crystal Structure Of Human Dpp-iv In Complex Withsa-(+)-
Methyl2-(3-
(aminomethyl)-4-(2,4-dichlorophenyl)-2-methyl-
7-oxo-5h-pyrrolo[3,4- B]pyridin-6(7h)-yl)acetate
pdb|3Q0T|B Chain B, Crystal Structure Of Human Dpp-iv In Complex Withsa-(+)-
Methyl2-(3-
(aminomethyl)-4-(2,4-dichlorophenyl)-2-methyl-
7-oxo-5h-pyrrolo[3,4- B]pyridin-6(7h)-yl)acetate
Length = 753
Score = 139 bits (351), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 138/546 (25%), Positives = 228/546 (41%), Gaps = 40/546 (7%)
Query: 5 TGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVV 64
+ WWS + F+A+ Q + +E+P S+ YP AGA N V+ VV
Sbjct: 176 SALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVV 235
Query: 65 S--AAGGPVSWMDLQCGG-TDQNYDEEYLARVNWMHGNILTAQVLNRSQ--TKLKVLKFD 119
+ + + +Q + YL V W ++ Q L R Q + + + +D
Sbjct: 236 NTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYD 295
Query: 120 IKTGQRKVILVEE-----LDSWVNLHDCFTPLDKGVTKYSGGFI-WASEKTGFRHLYLHD 173
+G+ ++ + WV F P + T F S + G+RH+
Sbjct: 296 ESSGRWNCLVARQHIEMSTTGWVGR---FRPSEPHFTLDGNSFYKIISNEEGYRHICYFQ 352
Query: 174 INGTCLGPITEGDWMVEQIVGVNEASGQV--YFTGTLDG-PLESHLYCAKLYPDWNHTLE 230
I+ IT+G W +++G+ + Y + G P +LY +L D+
Sbjct: 353 IDKKDCTFITKGTW---EVIGIEALTSDYLYYISNEYKGMPGGRNLYKIQL-SDYTKVTC 408
Query: 231 APVKLTNGKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLYEQPLTVPRI 290
+L + ++ +V + S P L S + + L + +
Sbjct: 409 LSCELNPERCQYYSVSFSKEAKYYQLRCSGPGLPLYTLHSSVNDKGLRVLEDNSALDKML 468
Query: 291 KRLQLEPPDIVQIQANDGTVLYGALYKP--DESRYGPPPYKTLISVYGGPCVQLVCDSWI 348
+ +Q+ + I N+ Y + P D+S+ Y L+ VY GPC Q
Sbjct: 469 QNVQMPSKKLDFIILNETKFWYQMILPPHFDKSK----KYPLLLDVYAGPCSQKA----- 519
Query: 349 NTVDMR---AQYLRS-KGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLI 404
+TV R A YL S + I+V D RG+ +G K +I G + EDQ+ A
Sbjct: 520 DTV-FRLNWATYLASTENIIVASFDGRGSGYQGDKIMHAINRRLGTFEVEDQIEAARQFS 578
Query: 405 KQGLAKVGHIXXXXXXXXXXXXAITLARFPDVFQCAVSGAPVTSWDGYDTFYTEKYMGLP 464
K G I ++ L VF+C ++ APV+ W+ YD+ YTE+YMGLP
Sbjct: 579 KMGFVDNKRIAIWGWSYGGYVTSMVLGSGSGVFKCGIAVAPVSRWEYYDSVYTERYMGLP 638
Query: 465 S-EDPVG-YEYSSVMHHVHKMKG-KLLLVHGMIDENVHFRHTARLINALVAARKPYEILI 521
+ ED + Y S+VM K + LL+HG D+NVHF+ +A++ ALV ++ +
Sbjct: 639 TPEDNLDHYRNSTVMSRAENFKQVEYLLIHGTADDNVHFQQSAQISKALVDVGVDFQAMW 698
Query: 522 FPDERH 527
+ DE H
Sbjct: 699 YTDEDH 704
>pdb|1R9M|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv At 2.1
Ang. Resolution.
pdb|1R9M|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv At 2.1
Ang. Resolution.
pdb|1R9M|C Chain C, Crystal Structure Of Human Dipeptidyl Peptidase Iv At 2.1
Ang. Resolution.
pdb|1R9M|D Chain D, Crystal Structure Of Human Dipeptidyl Peptidase Iv At 2.1
Ang. Resolution
Length = 733
Score = 139 bits (351), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 137/545 (25%), Positives = 227/545 (41%), Gaps = 38/545 (6%)
Query: 5 TGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVV 64
+ WWS + F+A+ Q + +E+P S+ YP AGA N V+ VV
Sbjct: 179 SALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVV 238
Query: 65 S--AAGGPVSWMDLQCGG-TDQNYDEEYLARVNWMHGNILTAQVLNRSQ--TKLKVLKFD 119
+ + + +Q + YL V W ++ Q L R Q + + + +D
Sbjct: 239 NTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYD 298
Query: 120 IKTGQRKVILVEE-----LDSWVNLHDCFTPLDKGVTKYSGGFI-WASEKTGFRHLYLHD 173
+G+ ++ + WV F P + T F S + G+RH+
Sbjct: 299 ESSGRWNCLVARQHIEMSTTGWVGR---FRPSEPHFTLDGNSFYKIISNEEGYRHICYFQ 355
Query: 174 INGTCLGPITEGDWMVEQIVGVNEASGQV--YFTGTLDG-PLESHLYCAKLYPDWNHTLE 230
I+ IT+G W +++G+ + Y + G P +LY +L D+
Sbjct: 356 IDKKDCTFITKGTW---EVIGIEALTSDYLYYISNEYKGMPGGRNLYKIQL-SDYTKVTC 411
Query: 231 APVKLTNGKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLYEQPLTVPRI 290
+L + ++ +V + S P L S + + L + +
Sbjct: 412 LSCELNPERCQYYSVSFSKEAKYYQLRCSGPGLPLYTLHSSVNDKGLRVLEDNSALDKML 471
Query: 291 KRLQLEPPDIVQIQANDGTVLYGALYKP--DESRYGPPPYKTLISVYGGPCVQLVCDSWI 348
+ +Q+ + I N+ Y + P D+S+ Y L+ VY GPC Q
Sbjct: 472 QNVQMPSKKLDFIILNETKFWYQMILPPHFDKSK----KYPLLLDVYAGPCSQKA----- 522
Query: 349 NTVDMR--AQYLRS-KGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIK 405
+TV A YL S + I+V D RG+ +G K +I G + EDQ+ A K
Sbjct: 523 DTVFRLNWATYLASTENIIVASFDGRGSGYQGDKIMHAINRRLGTFEVEDQIEAARQFSK 582
Query: 406 QGLAKVGHIXXXXXXXXXXXXAITLARFPDVFQCAVSGAPVTSWDGYDTFYTEKYMGLPS 465
G I ++ L VF+C ++ APV+ W+ YD+ YTE+YMGLP+
Sbjct: 583 MGFVDNKRIAIWGWSYGGYVTSMVLGSGSGVFKCGIAVAPVSRWEYYDSVYTERYMGLPT 642
Query: 466 -EDPVG-YEYSSVMHHVHKMKG-KLLLVHGMIDENVHFRHTARLINALVAARKPYEILIF 522
ED + Y S+VM K + LL+HG D+NVHF+ +A++ ALV ++ + +
Sbjct: 643 PEDNLDHYRNSTVMSRAENFKQVEYLLIHGTADDNVHFQQSAQISKALVDVGVDFQAMWY 702
Query: 523 PDERH 527
DE H
Sbjct: 703 TDEDH 707
>pdb|1J2E|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv
pdb|1J2E|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv
pdb|1WCY|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv (dppiv)
Complex With Diprotin A
pdb|1WCY|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv (dppiv)
Complex With Diprotin A
pdb|3VJM|A Chain A, Crystal Structure Of Human Depiptidyl Peptidase Iv (Dpp-4)
In Complex With A Prolylthiazolidine Inhibitor #1
pdb|3VJM|B Chain B, Crystal Structure Of Human Depiptidyl Peptidase Iv (Dpp-4)
In Complex With A Prolylthiazolidine Inhibitor #1
pdb|3VJK|A Chain A, Crystal Structure Of Human Depiptidyl Peptidase Iv (Dpp-4)
In Complex With Mp-513
pdb|3VJK|B Chain B, Crystal Structure Of Human Depiptidyl Peptidase Iv (Dpp-4)
In Complex With Mp-513
pdb|3VJL|A Chain A, Crystal Structure Of Human Depiptidyl Peptidase Iv (Dpp-4)
In Complex With A Prolylthiazolidine Inhibitor #2
pdb|3VJL|B Chain B, Crystal Structure Of Human Depiptidyl Peptidase Iv (Dpp-4)
In Complex With A Prolylthiazolidine Inhibitor #2
Length = 740
Score = 139 bits (351), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 138/546 (25%), Positives = 228/546 (41%), Gaps = 40/546 (7%)
Query: 5 TGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVV 64
+ WWS + F+A+ Q + +E+P S+ YP AGA N V+ VV
Sbjct: 180 SALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVV 239
Query: 65 S--AAGGPVSWMDLQCGG-TDQNYDEEYLARVNWMHGNILTAQVLNRSQ--TKLKVLKFD 119
+ + + +Q + YL V W ++ Q L R Q + + + +D
Sbjct: 240 NTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYD 299
Query: 120 IKTGQRKVILVEE-----LDSWVNLHDCFTPLDKGVTKYSGGFI-WASEKTGFRHLYLHD 173
+G+ ++ + WV F P + T F S + G+RH+
Sbjct: 300 ESSGRWNCLVARQHIEMSTTGWVGR---FRPSEPHFTLDGNSFYKIISNEEGYRHICYFQ 356
Query: 174 INGTCLGPITEGDWMVEQIVGVNEASGQV--YFTGTLDG-PLESHLYCAKLYPDWNHTLE 230
I+ IT+G W +++G+ + Y + G P +LY +L D+
Sbjct: 357 IDKKDCTFITKGTW---EVIGIEALTSDYLYYISNEYKGMPGGRNLYKIQL-SDYTKVTC 412
Query: 231 APVKLTNGKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLYEQPLTVPRI 290
+L + ++ +V + S P L S + + L + +
Sbjct: 413 LSCELNPERCQYYSVSFSKEAKYYQLRCSGPGLPLYTLHSSVNDKGLRVLEDNSALDKML 472
Query: 291 KRLQLEPPDIVQIQANDGTVLYGALYKP--DESRYGPPPYKTLISVYGGPCVQLVCDSWI 348
+ +Q+ + I N+ Y + P D+S+ Y L+ VY GPC Q
Sbjct: 473 QNVQMPSKKLDFIILNETKFWYQMILPPHFDKSK----KYPLLLDVYAGPCSQKA----- 523
Query: 349 NTVDMR---AQYLRS-KGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLI 404
+TV R A YL S + I+V D RG+ +G K +I G + EDQ+ A
Sbjct: 524 DTV-FRLNWATYLASTENIIVASFDGRGSGYQGDKIMHAINRRLGTFEVEDQIEAARQFS 582
Query: 405 KQGLAKVGHIXXXXXXXXXXXXAITLARFPDVFQCAVSGAPVTSWDGYDTFYTEKYMGLP 464
K G I ++ L VF+C ++ APV+ W+ YD+ YTE+YMGLP
Sbjct: 583 KMGFVDNKRIAIWGWSYGGYVTSMVLGSGSGVFKCGIAVAPVSRWEYYDSVYTERYMGLP 642
Query: 465 S-EDPVG-YEYSSVMHHVHKMKG-KLLLVHGMIDENVHFRHTARLINALVAARKPYEILI 521
+ ED + Y S+VM K + LL+HG D+NVHF+ +A++ ALV ++ +
Sbjct: 643 TPEDNLDHYRNSTVMSRAENFKQVEYLLIHGTADDNVHFQQSAQISKALVDVGVDFQAMW 702
Query: 522 FPDERH 527
+ DE H
Sbjct: 703 YTDEDH 708
>pdb|1PFQ|A Chain A, Crystal Structure Of Human Apo Dipeptidyl Peptidase Iv /
Cd26
pdb|1PFQ|B Chain B, Crystal Structure Of Human Apo Dipeptidyl Peptidase Iv /
Cd26
Length = 731
Score = 139 bits (350), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 137/545 (25%), Positives = 227/545 (41%), Gaps = 38/545 (6%)
Query: 5 TGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVV 64
+ WWS + F+A+ Q + +E+P S+ YP AGA N V+ VV
Sbjct: 177 SALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVV 236
Query: 65 S--AAGGPVSWMDLQCGG-TDQNYDEEYLARVNWMHGNILTAQVLNRSQ--TKLKVLKFD 119
+ + + +Q + YL V W ++ Q L R Q + + + +D
Sbjct: 237 NTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYD 296
Query: 120 IKTGQRKVILVEE-----LDSWVNLHDCFTPLDKGVTKYSGGFI-WASEKTGFRHLYLHD 173
+G+ ++ + WV F P + T F S + G+RH+
Sbjct: 297 ESSGRWNCLVARQHIEMSTTGWVGR---FRPSEPHFTLDGNSFYKIISNEEGYRHICYFQ 353
Query: 174 INGTCLGPITEGDWMVEQIVGVNEASGQV--YFTGTLDG-PLESHLYCAKLYPDWNHTLE 230
I+ IT+G W +++G+ + Y + G P +LY +L D+
Sbjct: 354 IDKKDCTFITKGTW---EVIGIEALTSDYLYYISNEYKGMPGGRNLYKIQL-SDYTKVTC 409
Query: 231 APVKLTNGKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLYEQPLTVPRI 290
+L + ++ +V + S P L S + + L + +
Sbjct: 410 LSCELNPERCQYYSVSFSKEAKYYQLRCSGPGLPLYTLHSSVNDKGLRVLEDNSALDKML 469
Query: 291 KRLQLEPPDIVQIQANDGTVLYGALYKP--DESRYGPPPYKTLISVYGGPCVQLVCDSWI 348
+ +Q+ + I N+ Y + P D+S+ Y L+ VY GPC Q
Sbjct: 470 QNVQMPSKKLDFIILNETKFWYQMILPPHFDKSK----KYPLLLDVYAGPCSQKA----- 520
Query: 349 NTVDMR--AQYLRS-KGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIK 405
+TV A YL S + I+V D RG+ +G K +I G + EDQ+ A K
Sbjct: 521 DTVFRLNWATYLASTENIIVASFDGRGSGYQGDKIMHAINRRLGTFEVEDQIEAARQFSK 580
Query: 406 QGLAKVGHIXXXXXXXXXXXXAITLARFPDVFQCAVSGAPVTSWDGYDTFYTEKYMGLPS 465
G I ++ L VF+C ++ APV+ W+ YD+ YTE+YMGLP+
Sbjct: 581 MGFVDNKRIAIWGWSYGGYVTSMVLGSGSGVFKCGIAVAPVSRWEYYDSVYTERYMGLPT 640
Query: 466 -EDPVG-YEYSSVMHHVHKMKG-KLLLVHGMIDENVHFRHTARLINALVAARKPYEILIF 522
ED + Y S+VM K + LL+HG D+NVHF+ +A++ ALV ++ + +
Sbjct: 641 PEDNLDHYRNSTVMSRAENFKQVEYLLIHGTADDNVHFQQSAQISKALVDVGVDFQAMWY 700
Query: 523 PDERH 527
DE H
Sbjct: 701 TDEDH 705
>pdb|3CCB|A Chain A, Crystal Structure Of Human Dpp4 In Complex With A
Benzimidazole Derivative
pdb|3CCB|B Chain B, Crystal Structure Of Human Dpp4 In Complex With A
Benzimidazole Derivative
pdb|3CCB|C Chain C, Crystal Structure Of Human Dpp4 In Complex With A
Benzimidazole Derivative
pdb|3CCB|D Chain D, Crystal Structure Of Human Dpp4 In Complex With A
Benzimidazole Derivative
pdb|3CCC|A Chain A, Crystal Structure Of Human Dpp4 In Complex With A
Benzimidazole Derivative
pdb|3CCC|B Chain B, Crystal Structure Of Human Dpp4 In Complex With A
Benzimidazole Derivative
pdb|3CCC|C Chain C, Crystal Structure Of Human Dpp4 In Complex With A
Benzimidazole Derivative
pdb|3CCC|D Chain D, Crystal Structure Of Human Dpp4 In Complex With A
Benzimidazole Derivative
pdb|3G0B|A Chain A, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With Tak-322
pdb|3G0B|B Chain B, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With Tak-322
pdb|3G0B|C Chain C, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With Tak-322
pdb|3G0B|D Chain D, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With Tak-322
pdb|3G0C|A Chain A, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With A Pyrimidinedione Inhibitor 1
pdb|3G0C|B Chain B, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With A Pyrimidinedione Inhibitor 1
pdb|3G0C|C Chain C, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With A Pyrimidinedione Inhibitor 1
pdb|3G0C|D Chain D, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With A Pyrimidinedione Inhibitor 1
pdb|3G0D|A Chain A, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With A Pyrimidinedione Inhibitor 2
pdb|3G0D|B Chain B, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With A Pyrimidinedione Inhibitor 2
pdb|3G0D|C Chain C, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With A Pyrimidinedione Inhibitor 2
pdb|3G0D|D Chain D, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With A Pyrimidinedione Inhibitor 2
pdb|3G0G|A Chain A, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With A Pyrimidinone Inhibitor 3
pdb|3G0G|B Chain B, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With A Pyrimidinone Inhibitor 3
pdb|3G0G|C Chain C, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With A Pyrimidinone Inhibitor 3
pdb|3G0G|D Chain D, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With A Pyrimidinone Inhibitor 3
pdb|3O95|A Chain A, Crystal Structure Of Human Dpp4 Bound To Tak-100
pdb|3O95|B Chain B, Crystal Structure Of Human Dpp4 Bound To Tak-100
pdb|3O95|C Chain C, Crystal Structure Of Human Dpp4 Bound To Tak-100
pdb|3O95|D Chain D, Crystal Structure Of Human Dpp4 Bound To Tak-100
pdb|3O9V|A Chain A, Crystal Structure Of Human Dpp4 Bound To Tak-986
pdb|3O9V|B Chain B, Crystal Structure Of Human Dpp4 Bound To Tak-986
pdb|3O9V|C Chain C, Crystal Structure Of Human Dpp4 Bound To Tak-986
pdb|3O9V|D Chain D, Crystal Structure Of Human Dpp4 Bound To Tak-986
pdb|3OPM|A Chain A, Crystal Structure Of Human Dpp4 Bound To Tak-294
pdb|3OPM|B Chain B, Crystal Structure Of Human Dpp4 Bound To Tak-294
pdb|3OPM|C Chain C, Crystal Structure Of Human Dpp4 Bound To Tak-294
pdb|3OPM|D Chain D, Crystal Structure Of Human Dpp4 Bound To Tak-294
pdb|4G1F|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv In
Complex With A Pyridopyrimidinedione Analogue
pdb|4G1F|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv In
Complex With A Pyridopyrimidinedione Analogue
pdb|4G1F|C Chain C, Crystal Structure Of Human Dipeptidyl Peptidase Iv In
Complex With A Pyridopyrimidinedione Analogue
pdb|4G1F|D Chain D, Crystal Structure Of Human Dipeptidyl Peptidase Iv In
Complex With A Pyridopyrimidinedione Analogue
Length = 740
Score = 139 bits (350), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 138/543 (25%), Positives = 227/543 (41%), Gaps = 40/543 (7%)
Query: 8 WWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVS-- 65
WWS + F+A+ Q + +E+P S+ YP AGA N V+ VV+
Sbjct: 189 WWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTD 248
Query: 66 AAGGPVSWMDLQCGG-TDQNYDEEYLARVNWMHGNILTAQVLNRSQ--TKLKVLKFDIKT 122
+ + +Q + YL V W ++ Q L R Q + + + +D +
Sbjct: 249 SLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESS 308
Query: 123 GQRKVILVEE-----LDSWVNLHDCFTPLDKGVTKYSGGFI-WASEKTGFRHLYLHDING 176
G+ ++ + WV F P + T F S + G+RH+ I+
Sbjct: 309 GRWNCLVARQHIEMSTTGWVGR---FRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDK 365
Query: 177 TCLGPITEGDWMVEQIVGVNEASGQV--YFTGTLDG-PLESHLYCAKLYPDWNHTLEAPV 233
IT+G W +++G+ + Y + G P +LY +L D+
Sbjct: 366 KDCTFITKGTW---EVIGIEALTSDYLYYISNEYKGMPGGRNLYKIQL-SDYTKVTCLSC 421
Query: 234 KLTNGKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLYEQPLTVPRIKRL 293
+L + ++ +V + S P L S + + L + ++ +
Sbjct: 422 ELNPERCQYYSVSFSKEAKYYQLRCSGPGLPLYTLHSSVNDKGLRVLEDNSALDKMLQNV 481
Query: 294 QLEPPDIVQIQANDGTVLYGALYKP--DESRYGPPPYKTLISVYGGPCVQLVCDSWINTV 351
Q+ + I N+ Y + P D+S+ Y L+ VY GPC Q +TV
Sbjct: 482 QMPSKKLDFIILNETKFWYQMILPPHFDKSK----KYPLLLDVYAGPCSQKA-----DTV 532
Query: 352 DMR---AQYLRS-KGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQG 407
R A YL S + I+V D RG+ +G K +I G + EDQ+ A K G
Sbjct: 533 -FRLNWATYLASTENIIVASFDGRGSGYQGDKIMHAINRRLGTFEVEDQIEAARQFSKMG 591
Query: 408 LAKVGHIXXXXXXXXXXXXAITLARFPDVFQCAVSGAPVTSWDGYDTFYTEKYMGLPS-E 466
I ++ L VF+C ++ APV+ W+ YD+ YTE+YMGLP+ E
Sbjct: 592 FVDNKRIAIWGWSYGGYVTSMVLGSGSGVFKCGIAVAPVSRWEYYDSVYTERYMGLPTPE 651
Query: 467 DPVG-YEYSSVMHHVHKMKG-KLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPD 524
D + Y S+VM K + LL+HG D+NVHF+ +A++ ALV ++ + + D
Sbjct: 652 DNLDHYRNSTVMSRAENFKQVEYLLIHGTADDNVHFQQSAQISKALVDVGVDFQAMWYTD 711
Query: 525 ERH 527
E H
Sbjct: 712 EDH 714
>pdb|2QJR|A Chain A, Dipepdyl Peptidase Iv In Complex With Inhibitor Pzf
pdb|2QJR|B Chain B, Dipepdyl Peptidase Iv In Complex With Inhibitor Pzf
pdb|3F8S|A Chain A, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With Inhibitor
pdb|3F8S|B Chain B, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With Inhibitor
Length = 748
Score = 139 bits (350), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 138/543 (25%), Positives = 227/543 (41%), Gaps = 40/543 (7%)
Query: 8 WWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVS-- 65
WWS + F+A+ Q + +E+P S+ YP AGA N V+ VV+
Sbjct: 185 WWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTD 244
Query: 66 AAGGPVSWMDLQCGG-TDQNYDEEYLARVNWMHGNILTAQVLNRSQ--TKLKVLKFDIKT 122
+ + +Q + YL V W ++ Q L R Q + + + +D +
Sbjct: 245 SLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESS 304
Query: 123 GQRKVILVEE-----LDSWVNLHDCFTPLDKGVTKYSGGFI-WASEKTGFRHLYLHDING 176
G+ ++ + WV F P + T F S + G+RH+ I+
Sbjct: 305 GRWNCLVARQHIEMSTTGWVGR---FRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDK 361
Query: 177 TCLGPITEGDWMVEQIVGVNEASGQV--YFTGTLDG-PLESHLYCAKLYPDWNHTLEAPV 233
IT+G W +++G+ + Y + G P +LY +L D+
Sbjct: 362 KDCTFITKGTW---EVIGIEALTSDYLYYISNEYKGMPGGRNLYKIQL-SDYTKVTCLSC 417
Query: 234 KLTNGKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLYEQPLTVPRIKRL 293
+L + ++ +V + S P L S + + L + ++ +
Sbjct: 418 ELNPERCQYYSVSFSKEAKYYQLRCSGPGLPLYTLHSSVNDKGLRVLEDNSALDKMLQNV 477
Query: 294 QLEPPDIVQIQANDGTVLYGALYKP--DESRYGPPPYKTLISVYGGPCVQLVCDSWINTV 351
Q+ + I N+ Y + P D+S+ Y L+ VY GPC Q +TV
Sbjct: 478 QMPSKKLDFIILNETKFWYQMILPPHFDKSK----KYPLLLDVYAGPCSQKA-----DTV 528
Query: 352 DMR---AQYLRS-KGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQG 407
R A YL S + I+V D RG+ +G K +I G + EDQ+ A K G
Sbjct: 529 -FRLNWATYLASTENIIVASFDGRGSGYQGDKIMHAINRRLGTFEVEDQIEAARQFSKMG 587
Query: 408 LAKVGHIXXXXXXXXXXXXAITLARFPDVFQCAVSGAPVTSWDGYDTFYTEKYMGLPS-E 466
I ++ L VF+C ++ APV+ W+ YD+ YTE+YMGLP+ E
Sbjct: 588 FVDNKRIAIWGWSYGGYVTSMVLGSGSGVFKCGIAVAPVSRWEYYDSVYTERYMGLPTPE 647
Query: 467 DPVG-YEYSSVMHHVHKMKG-KLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPD 524
D + Y S+VM K + LL+HG D+NVHF+ +A++ ALV ++ + + D
Sbjct: 648 DNLDHYRNSTVMSRAENFKQVEYLLIHGTADDNVHFQQSAQISKALVDVGVDFQAMWYTD 707
Query: 525 ERH 527
E H
Sbjct: 708 EDH 710
>pdb|2QT9|A Chain A, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH A 4-Aryl
Cyclohexylalanine Inhibitor
pdb|2QT9|B Chain B, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH A 4-Aryl
Cyclohexylalanine Inhibitor
pdb|2QTB|A Chain A, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH A 4-Aryl
Cyclohexylalanine Inhibitor
pdb|2QTB|B Chain B, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH A 4-Aryl
Cyclohexylalanine Inhibitor
Length = 766
Score = 139 bits (350), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 137/545 (25%), Positives = 227/545 (41%), Gaps = 38/545 (6%)
Query: 5 TGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVV 64
+ WWS + F+A+ Q + +E+P S+ YP AGA N V+ VV
Sbjct: 212 SALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVV 271
Query: 65 S--AAGGPVSWMDLQCGG-TDQNYDEEYLARVNWMHGNILTAQVLNRSQ--TKLKVLKFD 119
+ + + +Q + YL V W ++ Q L R Q + + + +D
Sbjct: 272 NTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYD 331
Query: 120 IKTGQRKVILVEE-----LDSWVNLHDCFTPLDKGVTKYSGGFI-WASEKTGFRHLYLHD 173
+G+ ++ + WV F P + T F S + G+RH+
Sbjct: 332 ESSGRWNCLVARQHIEMSTTGWVGR---FRPSEPHFTLDGNSFYKIISNEEGYRHICYFQ 388
Query: 174 INGTCLGPITEGDWMVEQIVGVNEASGQV--YFTGTLDG-PLESHLYCAKLYPDWNHTLE 230
I+ IT+G W +++G+ + Y + G P +LY +L D+
Sbjct: 389 IDKKDCTFITKGTW---EVIGIEALTSDYLYYISNEYKGMPGGRNLYKIQL-SDYTKVTC 444
Query: 231 APVKLTNGKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLYEQPLTVPRI 290
+L + ++ +V + S P L S + + L + +
Sbjct: 445 LSCELNPERCQYYSVSFSKEAKYYQLRCSGPGLPLYTLHSSVNDKGLRVLEDNSALDKML 504
Query: 291 KRLQLEPPDIVQIQANDGTVLYGALYKP--DESRYGPPPYKTLISVYGGPCVQLVCDSWI 348
+ +Q+ + I N+ Y + P D+S+ Y L+ VY GPC Q
Sbjct: 505 QNVQMPSKKLDFIILNETKFWYQMILPPHFDKSK----KYPLLLDVYAGPCSQKA----- 555
Query: 349 NTVDMR--AQYLRS-KGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIK 405
+TV A YL S + I+V D RG+ +G K +I G + EDQ+ A K
Sbjct: 556 DTVFRLNWATYLASTENIIVASFDGRGSGYQGDKIMHAINRRLGTFEVEDQIEAARQFSK 615
Query: 406 QGLAKVGHIXXXXXXXXXXXXAITLARFPDVFQCAVSGAPVTSWDGYDTFYTEKYMGLPS 465
G I ++ L VF+C ++ APV+ W+ YD+ YTE+YMGLP+
Sbjct: 616 MGFVDNKRIAIWGWSYGGYVTSMVLGSGSGVFKCGIAVAPVSRWEYYDSVYTERYMGLPT 675
Query: 466 -EDPVG-YEYSSVMHHVHKMKG-KLLLVHGMIDENVHFRHTARLINALVAARKPYEILIF 522
ED + Y S+VM K + LL+HG D+NVHF+ +A++ ALV ++ + +
Sbjct: 676 PEDNLDHYRNSTVMSRAENFKQVEYLLIHGTADDNVHFQQSAQISKALVDVGVDFQAMWY 735
Query: 523 PDERH 527
DE H
Sbjct: 736 TDEDH 740
>pdb|4A5S|A Chain A, Crystal Structure Of Human Dpp4 In Complex With A Noval
Heterocyclic Dpp4 Inhibitor
pdb|4A5S|B Chain B, Crystal Structure Of Human Dpp4 In Complex With A Noval
Heterocyclic Dpp4 Inhibitor
Length = 740
Score = 138 bits (348), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 137/545 (25%), Positives = 227/545 (41%), Gaps = 38/545 (6%)
Query: 5 TGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVV 64
+ WWS + F+A+ Q + +E+P S+ YP AGA N V+ VV
Sbjct: 174 SALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVV 233
Query: 65 S--AAGGPVSWMDLQCGG-TDQNYDEEYLARVNWMHGNILTAQVLNRSQ--TKLKVLKFD 119
+ + + +Q + YL V W ++ Q L R Q + + + +D
Sbjct: 234 NTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYD 293
Query: 120 IKTGQRKVILVEE-----LDSWVNLHDCFTPLDKGVTKYSGGFI-WASEKTGFRHLYLHD 173
+G+ ++ + WV F P + T F S + G+RH+
Sbjct: 294 ESSGRWNCLVARQHIEMSTTGWVGR---FRPSEPHFTLDGNSFYKIISNEEGYRHICYFQ 350
Query: 174 INGTCLGPITEGDWMVEQIVGVNEASGQV--YFTGTLDG-PLESHLYCAKLYPDWNHTLE 230
I+ IT+G W +++G+ + Y + G P +LY +L D+
Sbjct: 351 IDKKDCTFITKGTW---EVIGIEALTSDYLYYISNEYKGMPGGRNLYKIQLI-DYTKVTC 406
Query: 231 APVKLTNGKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLYEQPLTVPRI 290
+L + ++ +V + S P L S + + L + +
Sbjct: 407 LSCELNPERCQYYSVSFSKEAKYYQLRCSGPGLPLYTLHSSVNDKGLRVLEDNSALDKML 466
Query: 291 KRLQLEPPDIVQIQANDGTVLYGALYKP--DESRYGPPPYKTLISVYGGPCVQLVCDSWI 348
+ +Q+ + I N+ Y + P D+S+ Y L+ VY GPC Q
Sbjct: 467 QNVQMPSKKLDFIILNETKFWYQMILPPHFDKSK----KYPLLLDVYAGPCSQKA----- 517
Query: 349 NTVDMR--AQYLRS-KGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIK 405
+TV A YL S + I+V D RG+ +G K +I G + EDQ+ A K
Sbjct: 518 DTVFRLNWATYLASTENIIVASFDGRGSGYQGDKIMHAINRRLGTFEVEDQIEAARQFSK 577
Query: 406 QGLAKVGHIXXXXXXXXXXXXAITLARFPDVFQCAVSGAPVTSWDGYDTFYTEKYMGLPS 465
G I ++ L VF+C ++ APV+ W+ YD+ YTE+YMGLP+
Sbjct: 578 MGFVDNKRIAIWGWSYGGYVTSMVLGSGSGVFKCGIAVAPVSRWEYYDSVYTERYMGLPT 637
Query: 466 -EDPVG-YEYSSVMHHVHKMKG-KLLLVHGMIDENVHFRHTARLINALVAARKPYEILIF 522
ED + Y S+VM K + LL+HG D+NVHF+ +A++ ALV ++ + +
Sbjct: 638 PEDNLDHYRNSTVMSRAENFKQVEYLLIHGTADDNVHFQQSAQISKALVDVGVDFQAMWY 697
Query: 523 PDERH 527
DE H
Sbjct: 698 TDEDH 702
>pdb|1U8E|A Chain A, Human Dipeptidyl Peptidase IvCD26 MUTANT Y547F
pdb|1U8E|B Chain B, Human Dipeptidyl Peptidase IvCD26 MUTANT Y547F
Length = 728
Score = 138 bits (348), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 136/545 (24%), Positives = 227/545 (41%), Gaps = 38/545 (6%)
Query: 5 TGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVV 64
+ WWS + F+A+ Q + +E+P S+ YP AGA N V+ VV
Sbjct: 174 SALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVV 233
Query: 65 S--AAGGPVSWMDLQCGG-TDQNYDEEYLARVNWMHGNILTAQVLNRSQ--TKLKVLKFD 119
+ + + +Q + YL V W ++ Q L R Q + + + +D
Sbjct: 234 NTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYD 293
Query: 120 IKTGQRKVILVEE-----LDSWVNLHDCFTPLDKGVTKYSGGFI-WASEKTGFRHLYLHD 173
+G+ ++ + WV F P + T F S + G+RH+
Sbjct: 294 ESSGRWNCLVARQHIEMSTTGWVGR---FRPSEPHFTLDGNSFYKIISNEEGYRHICYFQ 350
Query: 174 INGTCLGPITEGDWMVEQIVGVNEASGQV--YFTGTLDG-PLESHLYCAKLYPDWNHTLE 230
I+ IT+G W +++G+ + Y + G P +LY +L D+
Sbjct: 351 IDKKDCTFITKGTW---EVIGIEALTSDYLYYISNEYKGMPGGRNLYKIQL-SDYTKVTC 406
Query: 231 APVKLTNGKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLYEQPLTVPRI 290
+L + ++ +V + S P L S + + L + +
Sbjct: 407 LSCELNPERCQYYSVSFSKEAKYYQLRCSGPGLPLYTLHSSVNDKGLRVLEDNSALDKML 466
Query: 291 KRLQLEPPDIVQIQANDGTVLYGALYKP--DESRYGPPPYKTLISVYGGPCVQLVCDSWI 348
+ +Q+ + I N+ Y + P D+S+ Y L+ V+ GPC Q
Sbjct: 467 QNVQMPSKKLDFIILNETKFWYQMILPPHFDKSK----KYPLLLDVFAGPCSQKA----- 517
Query: 349 NTVDMR--AQYLRS-KGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIK 405
+TV A YL S + I+V D RG+ +G K +I G + EDQ+ A K
Sbjct: 518 DTVFRLNWATYLASTENIIVASFDGRGSGYQGDKIMHAINRRLGTFEVEDQIEAARQFSK 577
Query: 406 QGLAKVGHIXXXXXXXXXXXXAITLARFPDVFQCAVSGAPVTSWDGYDTFYTEKYMGLPS 465
G I ++ L VF+C ++ APV+ W+ YD+ YTE+YMGLP+
Sbjct: 578 MGFVDNKRIAIWGWSYGGYVTSMVLGSGSGVFKCGIAVAPVSRWEYYDSVYTERYMGLPT 637
Query: 466 -EDPVG-YEYSSVMHHVHKMKG-KLLLVHGMIDENVHFRHTARLINALVAARKPYEILIF 522
ED + Y S+VM K + LL+HG D+NVHF+ +A++ ALV ++ + +
Sbjct: 638 PEDNLDHYRNSTVMSRAENFKQVEYLLIHGTADDNVHFQQSAQISKALVDVGVDFQAMWY 697
Query: 523 PDERH 527
DE H
Sbjct: 698 TDEDH 702
>pdb|3QBJ|A Chain A, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With Inhibitor
pdb|3QBJ|B Chain B, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With Inhibitor
Length = 748
Score = 136 bits (343), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 137/543 (25%), Positives = 226/543 (41%), Gaps = 40/543 (7%)
Query: 8 WWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVS-- 65
WWS + F+A+ Q + +E+P S+ YP AGA N V+ VV+
Sbjct: 185 WWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTD 244
Query: 66 AAGGPVSWMDLQCGG-TDQNYDEEYLARVNWMHGNILTAQVLNRSQ--TKLKVLKFDIKT 122
+ + +Q + YL V W ++ Q L R Q + + + +D +
Sbjct: 245 SLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESS 304
Query: 123 GQRKVILVEE-----LDSWVNLHDCFTPLDKGVTKYSGGFI-WASEKTGFRHLYLHDING 176
G+ ++ + WV F P + T F S + G+RH+ I+
Sbjct: 305 GRWNCLVARQHIEMSTTGWVGR---FRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDK 361
Query: 177 TCLGPITEGDWMVEQIVGVNEASGQ--VYFTGTLDG-PLESHLYCAKLYPDWNHTLEAPV 233
IT+G W +++G+ + Y + G P +LY +L D+
Sbjct: 362 KDCTFITKGTW---EVIGIEALTSDYLYYISNEYKGMPGGRNLYKIQL-SDYTKVTCLSC 417
Query: 234 KLTNGKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLYEQPLTVPRIKRL 293
+L + ++ +V + S P L S + + L + ++ +
Sbjct: 418 ELNPERCQYYSVSFSKEAKYYQLRCSGPGLPLYTLHSSVNDKGLRVLEDNSALDKMLQNV 477
Query: 294 QLEPPDIVQIQANDGTVLYGALYKP--DESRYGPPPYKTLISVYGGPCVQLVCDSWINTV 351
Q+ + I + Y + P D+S+ Y L+ VY GPC Q +TV
Sbjct: 478 QMPSKKLDFIILAETKFWYQMILPPHFDKSK----KYPLLLDVYAGPCSQKA-----DTV 528
Query: 352 DMR---AQYLRS-KGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQG 407
R A YL S + I+V D RG+ +G K +I G + EDQ+ A K G
Sbjct: 529 -FRLNWATYLASTENIIVASFDGRGSGYQGDKIMHAINRRLGTFEVEDQIEAARQFSKMG 587
Query: 408 LAKVGHIXXXXXXXXXXXXAITLARFPDVFQCAVSGAPVTSWDGYDTFYTEKYMGLPS-E 466
I ++ L VF+C ++ APV+ W+ YD+ YTE+YMGLP+ E
Sbjct: 588 FVDNKRIAIWGWSYGGYVTSMVLGSGSGVFKCGIAVAPVSRWEYYDSVYTERYMGLPTPE 647
Query: 467 DPVG-YEYSSVMHHVHKMKG-KLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPD 524
D + Y S+VM K + LL+HG D+NVHF+ +A++ ALV ++ + + D
Sbjct: 648 DNLDHYRNSTVMSRAENFKQVEYLLIHGTADDNVHFQQSAQISKALVDVGVDFQAMWYTD 707
Query: 525 ERH 527
E H
Sbjct: 708 EDH 710
>pdb|1ORV|A Chain A, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26)
pdb|1ORV|B Chain B, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26)
pdb|1ORV|C Chain C, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26)
pdb|1ORV|D Chain D, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26)
pdb|1ORW|A Chain A, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26) In Complex With A Peptidomimetic Inhibitor
pdb|1ORW|B Chain B, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26) In Complex With A Peptidomimetic Inhibitor
pdb|1ORW|C Chain C, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26) In Complex With A Peptidomimetic Inhibitor
pdb|1ORW|D Chain D, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26) In Complex With A Peptidomimetic Inhibitor
pdb|2BUA|A Chain A, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26) In Complex With A Low Molecular Weight Inhibitor.
pdb|2BUA|B Chain B, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26) In Complex With A Low Molecular Weight Inhibitor.
pdb|2BUA|C Chain C, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26) In Complex With A Low Molecular Weight Inhibitor.
pdb|2BUA|D Chain D, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26) In Complex With A Low Molecular Weight Inhibitor.
pdb|2BUC|A Chain A, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26) In Complex With A Tetrahydroisoquinoline
Inhibitor
pdb|2BUC|B Chain B, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26) In Complex With A Tetrahydroisoquinoline
Inhibitor
pdb|2BUC|C Chain C, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26) In Complex With A Tetrahydroisoquinoline
Inhibitor
pdb|2BUC|D Chain D, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26) In Complex With A Tetrahydroisoquinoline
Inhibitor
pdb|2AJ8|A Chain A, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With
7-Benzyl-1,3-
Dimethyl-8-Piperazin-1-Yl-3,7-Dihydro-Purine-2,6-Dione
(Bdpx)
pdb|2AJ8|B Chain B, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With
7-Benzyl-1,3-
Dimethyl-8-Piperazin-1-Yl-3,7-Dihydro-Purine-2,6-Dione
(Bdpx)
pdb|2AJ8|C Chain C, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With
7-Benzyl-1,3-
Dimethyl-8-Piperazin-1-Yl-3,7-Dihydro-Purine-2,6-Dione
(Bdpx)
pdb|2AJ8|D Chain D, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With
7-Benzyl-1,3-
Dimethyl-8-Piperazin-1-Yl-3,7-Dihydro-Purine-2,6-Dione
(Bdpx)
pdb|2AJB|A Chain A, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With The
Tripeptide Tert-Butyl-Gly-L-Pro-L-Ile (Tbu-Gpi)
pdb|2AJB|B Chain B, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With The
Tripeptide Tert-Butyl-Gly-L-Pro-L-Ile (Tbu-Gpi)
pdb|2AJB|C Chain C, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With The
Tripeptide Tert-Butyl-Gly-L-Pro-L-Ile (Tbu-Gpi)
pdb|2AJB|D Chain D, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With The
Tripeptide Tert-Butyl-Gly-L-Pro-L-Ile (Tbu-Gpi)
pdb|2AJC|A Chain A, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With
4-(2- Aminoethyl)-Benzene Sulphonyl Fluoride (Aebsf)
pdb|2AJC|B Chain B, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With
4-(2- Aminoethyl)-Benzene Sulphonyl Fluoride (Aebsf)
pdb|2AJC|C Chain C, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With
4-(2- Aminoethyl)-Benzene Sulphonyl Fluoride (Aebsf)
pdb|2AJC|D Chain D, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With
4-(2- Aminoethyl)-Benzene Sulphonyl Fluoride (Aebsf)
pdb|2AJD|A Chain A, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With
L-Pro-Boro-L- Pro (Boropro)
pdb|2AJD|B Chain B, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With
L-Pro-Boro-L- Pro (Boropro)
pdb|2AJD|C Chain C, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With
L-Pro-Boro-L- Pro (Boropro)
pdb|2AJD|D Chain D, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With
L-Pro-Boro-L- Pro (Boropro)
Length = 728
Score = 135 bits (340), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 139/552 (25%), Positives = 225/552 (40%), Gaps = 58/552 (10%)
Query: 8 WWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAA 67
WWS + F+A+ Q + +E+P S+ YP AGA N V+ VV
Sbjct: 177 WWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRIPYPKAGAENPTVKFFVVDT- 235
Query: 68 GGPVSWMDLQCGGTDQNYD----------EEYLARVNWMHGNILTAQVLNRSQ--TKLKV 115
L + +Y + YL V W+ ++ Q + R+Q + + +
Sbjct: 236 ------RTLSPNASVTSYQIVPPASVLIGDHYLCGVTWVTEERISLQWIRRAQNYSIIDI 289
Query: 116 LKFDIKTGQ------RKVILVEELDSWVNLHDCFTPLDKGVTKYSGGFI-WASEKTGFRH 168
+D TG+ R+ I + WV F P + T F S + G++H
Sbjct: 290 CDYDESTGRWISSVARQHIEISTT-GWVGR---FRPAEPHFTSDGNSFYKIISNEEGYKH 345
Query: 169 LYLHDINGTCLGPITEGDWMVEQIVGVNEASGQV--YFTGTLDG-PLESHLYCAKLYPDW 225
+ + + IT+G W +++G+ + Y + G P +LY +L D+
Sbjct: 346 ICHFQTDKSNCTFITKGAW---EVIGIEALTSDYLYYISNEHKGMPGGRNLYRIQL-NDY 401
Query: 226 NHTLEAPVKLTNGKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLYEQPL 285
+L + ++ + N + P L S + L +
Sbjct: 402 TKVTCLSCELNPERCQYYSASFSNKAKYYQLRCFGPGLPLYTLHSSSSDKELRVLEDNSA 461
Query: 286 TVPRIKRLQLEPPDIVQIQANDGTVLYGALYKP--DESRYGPPPYKTLISVYGGPCVQLV 343
++ +Q+ + I + Y + P D+S+ Y LI VY GPC Q V
Sbjct: 462 LDKMLQDVQMPSKKLDVINLHGTKFWYQMILPPHFDKSK----KYPLLIEVYAGPCSQKV 517
Query: 344 CD----SWINTVDMRAQYLRS-KGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLT 398
SW A YL S + I+V D RG+ +G K +I G + EDQ+
Sbjct: 518 DTVFRLSW-------ATYLASTENIIVASFDGRGSGYQGDKIMHAINRRLGTFEVEDQIE 570
Query: 399 GAEWLIKQGLAKVGHIXXXXXXXXXXXXAITLARFPDVFQCAVSGAPVTSWDGYDTFYTE 458
K G I ++ L VF+C ++ APV+ W+ YD+ YTE
Sbjct: 571 ATRQFSKMGFVDDKRIAIWGWSYGGYVTSMVLGAGSGVFKCGIAVAPVSKWEYYDSVYTE 630
Query: 459 KYMGLPS-EDPVG-YEYSSVMHHVHKMKG-KLLLVHGMIDENVHFRHTARLINALVAARK 515
+YMGLP+ ED + Y S+VM K + LL+HG D+NVHF+ +A+L ALV A
Sbjct: 631 RYMGLPTPEDNLDYYRNSTVMSRAENFKQVEYLLIHGTADDNVHFQQSAQLSKALVDAGV 690
Query: 516 PYEILIFPDERH 527
++ + + DE H
Sbjct: 691 DFQTMWYTDEDH 702
>pdb|1XFD|A Chain A, Structure Of A Human A-Type Potassium Channel Accelerating
Factor Dppx, A Member Of The Dipeptidyl Aminopeptidase
Family
pdb|1XFD|B Chain B, Structure Of A Human A-Type Potassium Channel Accelerating
Factor Dppx, A Member Of The Dipeptidyl Aminopeptidase
Family
pdb|1XFD|C Chain C, Structure Of A Human A-Type Potassium Channel Accelerating
Factor Dppx, A Member Of The Dipeptidyl Aminopeptidase
Family
pdb|1XFD|D Chain D, Structure Of A Human A-Type Potassium Channel Accelerating
Factor Dppx, A Member Of The Dipeptidyl Aminopeptidase
Family
Length = 723
Score = 134 bits (336), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 128/538 (23%), Positives = 221/538 (41%), Gaps = 32/538 (5%)
Query: 6 GYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGS--EAQEDHAYPFAGASNVKVRLGV 63
+WWS D +A+ ++ S +P + + GS + + YP AG+ N + L V
Sbjct: 177 AHWWSPDGTRLAYAAINDSRVPIMEL----PTYTGSIYPTVKPYHYPKAGSENPSISLHV 232
Query: 64 VSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTG 123
+ GP +++ D E Y+ V W + LNR+Q + D TG
Sbjct: 233 I-GLNGPTHDLEMMPPD-DPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTG 290
Query: 124 QRKVILVEELDSWVNLHDCFTPLDKGVTKYSGGFIWASEKTG---FRHLYLH----DING 176
+E ++W++ + K K+ FI A + G F H+ + + +
Sbjct: 291 VCTKKHEDESEAWLHRQNEEPVFSKDGRKFF--FIRAIPQGGRGKFYHITVSSSQPNSSN 348
Query: 177 TCLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLT 236
+ IT GDW V +I+ +E ++YF T D P LY A ++N + L
Sbjct: 349 DNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLS-CDLV 407
Query: 237 NGKGKHVAVLDHNMRNFVDFHDSLDSP--PRILLCSLQDGSLVLPLYEQPLTVPRIKRLQ 294
A H+M F+ + P P + + + D + L I Q
Sbjct: 408 ENCTYFSASFSHSMDFFLL---KCEGPGVPMVTVHNTTDKKKMFDLETNEHVKKAINDRQ 464
Query: 295 LEPPDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMR 354
+ + I+ +D + L KP + Y L+ V G P Q V + + V
Sbjct: 465 MPKVEYRDIEIDDYNLPMQIL-KP-ATFTDTTHYPLLLVVDGTPGSQSVAEKF--EVSWE 520
Query: 355 AQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHI 414
+ S G +V K D RG+ +G K ++ G ++ +DQ+ ++K+ +
Sbjct: 521 TVMVSSHGAVVVKCDGRGSGFQGTKLLHEVRRRLGLLEEKDQMEAVRTMLKEQYIDRTRV 580
Query: 415 XXXXXXXXXXXXAITLARFPD----VFQCAVSGAPVTSWDGYDTFYTEKYMGLPSEDPVG 470
L + F C + +P+T + Y + ++E+Y+GL D
Sbjct: 581 AVFGKDYGGYLSTYILPAKGENQGQTFTCGSALSPITDFKLYASAFSERYLGLHGLDNRA 640
Query: 471 YEYSSVMHHVHKMK-GKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERH 527
YE + V H V ++ + L++H DE +HF+HTA LI L+ + Y + I+PDE H
Sbjct: 641 YEMTKVAHRVSALEEQQFLIIHPTADEKIHFQHTAELITQLIRGKANYSLQIYPDESH 698
>pdb|2GBC|A Chain A, Native Dpp-Iv (Cd26) From Rat
pdb|2GBC|B Chain B, Native Dpp-Iv (Cd26) From Rat
pdb|2GBF|A Chain A, Rat Dpp-Iv With Alkynyl Cyanopyrrolidine #1
pdb|2GBF|B Chain B, Rat Dpp-Iv With Alkynyl Cyanopyrrolidine #1
pdb|2GBG|A Chain A, Rat Dpp-Iv With Alkynyl Cyanopyrrolidine #2
pdb|2GBG|B Chain B, Rat Dpp-Iv With Alkynyl Cyanopyrrolidine #2
pdb|2GBI|A Chain A, Rat Dpp-Iv With Xanthine Inhibitor 4
pdb|2GBI|B Chain B, Rat Dpp-Iv With Xanthine Inhibitor 4
pdb|2I3Z|A Chain A, Rat Dpp-iv With Xanthine Mimetic Inhibitor #7
pdb|2I3Z|B Chain B, Rat Dpp-iv With Xanthine Mimetic Inhibitor #7
pdb|2OAE|A Chain A, Crystal Structure Of Rat Dipeptidyl Peptidase (Dppiv) With
Thiazole-Based Peptide Mimetic #31
pdb|2OAE|B Chain B, Crystal Structure Of Rat Dipeptidyl Peptidase (Dppiv) With
Thiazole-Based Peptide Mimetic #31
pdb|4FFV|A Chain A, Crystal Structure Of Dipeptidyl Peptidase Iv (Dpp4,
Dpp-Iv, Cd26) In Complex With 11a19 Fab
pdb|4FFV|B Chain B, Crystal Structure Of Dipeptidyl Peptidase Iv (Dpp4,
Dpp-Iv, Cd26) In Complex With 11a19 Fab
pdb|4FFW|A Chain A, Crystal Structure Of Dipeptidyl Peptidase Iv (Dpp4,
Dpp-Iv, Cd26) In Complex With Fab + Sitagliptin
pdb|4FFW|B Chain B, Crystal Structure Of Dipeptidyl Peptidase Iv (Dpp4,
Dpp-Iv, Cd26) In Complex With Fab + Sitagliptin
Length = 730
Score = 124 bits (311), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 139/558 (24%), Positives = 227/558 (40%), Gaps = 61/558 (10%)
Query: 5 TGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVV 64
+ WWS + F+A+ Q + + +P S+ YP AGA N V+ +V
Sbjct: 173 SALWWSPNGTFLAYAQFNDTGVPLIEYSFYSDESLQYPKTVWIPYPKAGAVNPTVKFFIV 232
Query: 65 SAAGGPVSWMDLQCGGT---DQNYDEEYLARVNWMHGNILTAQVLNRSQ--TKLKVLKFD 119
+ + + T + YL V W+ + ++ Q L R Q + + + +D
Sbjct: 233 NTDSLSSTTTTIPMQITAPASVTTGDHYLCDVAWVSEDRISLQWLRRIQNYSVMAICDYD 292
Query: 120 IKTGQRKVILVEELDSWVNLHDC--FTPLDKGVTKYSGGFI-WASEKTGFRHLYLHDIN- 175
T +E C F P + T F S+K G++H+ +
Sbjct: 293 KTTLVWNCPTTQEHIETSATGWCGRFRPAEPHFTSDGSSFYKIVSDKDGYKHICQFQKDR 352
Query: 176 --GTCLGPITEGDWMVEQIVGVNEASGQVYFTGT--LDGPLESHLYCAKLYPDWNHTLEA 231
IT+G W V I + S +Y+ + P +LY
Sbjct: 353 KPEQVCTFITKGAWEVISIEAL--TSDYLYYISNEYKEMPGGRNLY-------------- 396
Query: 232 PVKLTNGKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLY-------EQP 284
++LT+ K D N + SL + + L PLY ++
Sbjct: 397 KIQLTDHTNKKCLSCDLNPERCQYYSVSLSKEAKYYQLGCRGPGL--PLYTLHRSTDQKE 454
Query: 285 LTV--------PRIKRLQLEPPDIVQIQANDGTVLYGALYKP--DESRYGPPPYKTLISV 334
L V ++ +Q+ + I N+ Y + P D+S+ Y LI V
Sbjct: 455 LRVLEDNSALDKMLQDVQMPSKKLDFIVLNETRFWYQMILPPHFDKSK----KYPLLIDV 510
Query: 335 YGGPCVQLVCDSW-INTVDMRAQYLRS-KGILVWKLDNRGTARRGLKFEASIKHNCGRID 392
Y GPC Q ++ +N A YL S + I+V D RG+ +G K +I G ++
Sbjct: 511 YAGPCSQKADAAFRLN----WATYLASTENIIVASFDGRGSGYQGDKIMHAINKRLGTLE 566
Query: 393 AEDQLTGAEWLIKQGLAKVGHIXXXXXXXXXXXXAITLARFPDVFQCAVSGAPVTSWDGY 452
EDQ+ A +K G + ++ L VF+C ++ APV+ W+ Y
Sbjct: 567 VEDQIEAARQFLKMGFVDSKRVAIWGWSYGGYVTSMVLGSGSGVFKCGIAVAPVSRWEYY 626
Query: 453 DTFYTEKYMGLPS-EDPVG-YEYSSVMHHVHKMKG-KLLLVHGMIDENVHFRHTARLINA 509
D+ YTE+YMGLP+ ED + Y S+VM K + LL+HG D+NVHF+ +A++ A
Sbjct: 627 DSVYTERYMGLPTPEDNLDHYRNSTVMSRAENFKQVEYLLIHGTADDNVHFQQSAQISKA 686
Query: 510 LVAARKPYEILIFPDERH 527
LV A ++ + + DE H
Sbjct: 687 LVDAGVDFQAMWYTDEDH 704
>pdb|2QZP|A Chain A, Crystal Structure Of Mutation Of An Acylptide
HydrolaseESTERASE FROM AEROPYRUM PERNIX K1
pdb|2QZP|B Chain B, Crystal Structure Of Mutation Of An Acylptide
HydrolaseESTERASE FROM AEROPYRUM PERNIX K1
Length = 562
Score = 75.9 bits (185), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 83/295 (28%), Positives = 124/295 (42%), Gaps = 29/295 (9%)
Query: 252 NFVDFHDSLDSPPRILLCSLQDGSLVLPLYEQPLTVPRIKRLQLEPPDIVQIQANDGTVL 311
V H SL +PPRI+ SL G PL E L P R + +V +++ DG+ +
Sbjct: 274 KLVTSHTSLSTPPRIV--SLPSGE---PLLEGGL--PEDLRRSIAGSRLVWVESFDGSRV 326
Query: 312 YGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNR 371
+ ES P P T++ V+GGP + DSW D A L + G V + R
Sbjct: 327 PTYVL---ESGRAPTPGPTVVLVHGGPFAE-DSDSW----DTFAASLAAAGFHVVMPNYR 378
Query: 372 GTARRGLKFEASIKHN-CGRIDAEDQLTGAEWLIKQGLAKVGHIXXXXXXXXXXXXAITL 430
G+ G ++ I + CG + ED A W + GLA +I A+T+
Sbjct: 379 GSTGYGEEWRLKIIGDPCGG-ELEDVSAAARWARESGLASELYIMGYSYGGYMTLCALTM 437
Query: 431 ARFPDVFQCAVSGAPVTSW-------DGYDTFYTEKYMGLPSEDPVGYEYSSVMHHVHKM 483
P +F+ V+GA V W D + E+ G E S ++HV ++
Sbjct: 438 K--PGLFKAGVAGASVVDWEEMYELSDAAFRNFIEQLTGGSREI---MRSRSPINHVDRI 492
Query: 484 KGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYM 538
K L L+H D + RL+ L+A K +E I PD H D + +
Sbjct: 493 KEPLALIHPQNDSRTPLKPLLRLMGELLARGKTFEAHIIPDAGHAINTMEDAVKI 547
>pdb|1VE6|A Chain A, Crystal Structure Of An Acylpeptide HydrolaseESTERASE FROM
Aeropyrum Pernix K1
pdb|1VE6|B Chain B, Crystal Structure Of An Acylpeptide HydrolaseESTERASE FROM
Aeropyrum Pernix K1
pdb|1VE7|A Chain A, Crystal Structure Of An Acylpeptide HydrolaseESTERASE FROM
AEROPYRUM Pernix K1 In Complex With P-Nitrophenyl
Phosphate
pdb|1VE7|B Chain B, Crystal Structure Of An Acylpeptide HydrolaseESTERASE FROM
AEROPYRUM Pernix K1 In Complex With P-Nitrophenyl
Phosphate
pdb|2HU5|A Chain A, Binding Of Inhibitors By Acylaminoacyl-Peptidase
pdb|2HU5|B Chain B, Binding Of Inhibitors By Acylaminoacyl-Peptidase
pdb|2HU7|A Chain A, Binding Of Inhibitors By Acylaminoacyl Peptidase
pdb|2HU7|B Chain B, Binding Of Inhibitors By Acylaminoacyl Peptidase
pdb|3O4G|A Chain A, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4G|B Chain B, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4G|C Chain C, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4G|D Chain D, Structure And Catalysis Of Acylaminoacyl Peptidase
Length = 582
Score = 75.5 bits (184), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 82/284 (28%), Positives = 121/284 (42%), Gaps = 29/284 (10%)
Query: 252 NFVDFHDSLDSPPRILLCSLQDGSLVLPLYEQPLTVPRIKRLQLEPPDIVQIQANDGTVL 311
V H SL +PPRI+ SL G PL E L P R + +V +++ DG+ +
Sbjct: 294 KLVTSHTSLSTPPRIV--SLPSGE---PLLEGGL--PEDLRRSIAGSRLVWVESFDGSRV 346
Query: 312 YGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNR 371
+ ES P P T++ V+GGP + DSW D A L + G V + R
Sbjct: 347 PTYVL---ESGRAPTPGPTVVLVHGGPFAE-DSDSW----DTFAASLAAAGFHVVMPNYR 398
Query: 372 GTARRGLKFEASIKHN-CGRIDAEDQLTGAEWLIKQGLAKVGHIXXXXXXXXXXXXAITL 430
G+ G ++ I + CG + ED A W + GLA +I A+T+
Sbjct: 399 GSTGYGEEWRLKIIGDPCGG-ELEDVSAAARWARESGLASELYIMGYSYGGYMTLCALTM 457
Query: 431 ARFPDVFQCAVSGAPVTSW-------DGYDTFYTEKYMGLPSEDPVGYEYSSVMHHVHKM 483
P +F+ V+GA V W D + E+ G E S ++HV ++
Sbjct: 458 K--PGLFKAGVAGASVVDWEEMYELSDAAFRNFIEQLTGGSREI---MRSRSPINHVDRI 512
Query: 484 KGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERH 527
K L L+H D + RL+ L+A K +E I PD H
Sbjct: 513 KEPLALIHPQNDSRTPLKPLLRLMGELLARGKTFEAHIIPDAGH 556
>pdb|2HU8|A Chain A, Binding Of Inhibitors By Acylaminoacyl Peptidase
pdb|2HU8|B Chain B, Binding Of Inhibitors By Acylaminoacyl Peptidase
Length = 582
Score = 75.5 bits (184), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 82/284 (28%), Positives = 121/284 (42%), Gaps = 29/284 (10%)
Query: 252 NFVDFHDSLDSPPRILLCSLQDGSLVLPLYEQPLTVPRIKRLQLEPPDIVQIQANDGTVL 311
V H SL +PPRI+ SL G PL E L P R + +V +++ DG+ +
Sbjct: 294 KLVTSHTSLSTPPRIV--SLPSGE---PLLEGGL--PEDLRRSIAGSRLVWVESFDGSRV 346
Query: 312 YGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNR 371
+ ES P P T++ V+GGP + DSW D A L + G V + R
Sbjct: 347 PTYVL---ESGRAPTPGPTVVLVHGGPFAE-DSDSW----DTFAASLAAAGFHVVMPNYR 398
Query: 372 GTARRGLKFEASIKHN-CGRIDAEDQLTGAEWLIKQGLAKVGHIXXXXXXXXXXXXAITL 430
G+ G ++ I + CG + ED A W + GLA +I A+T+
Sbjct: 399 GSTGYGEEWRLKIIGDPCGG-ELEDVSAAARWARESGLASELYIMGYAYGGYMTLCALTM 457
Query: 431 ARFPDVFQCAVSGAPVTSW-------DGYDTFYTEKYMGLPSEDPVGYEYSSVMHHVHKM 483
P +F+ V+GA V W D + E+ G E S ++HV ++
Sbjct: 458 K--PGLFKAGVAGASVVDWEEMYELSDAAFRNFIEQLTGGSREI---MRSRSPINHVDRI 512
Query: 484 KGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERH 527
K L L+H D + RL+ L+A K +E I PD H
Sbjct: 513 KEPLALIHPQNDSRTPLKPLLRLMGELLARGKTFEAHIIPDAGH 556
>pdb|2QR5|A Chain A, Aeropyrum Pernix Acylaminoacyl Peptidase, H367a Mutant
pdb|2QR5|B Chain B, Aeropyrum Pernix Acylaminoacyl Peptidase, H367a Mutant
Length = 582
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 83/293 (28%), Positives = 122/293 (41%), Gaps = 29/293 (9%)
Query: 252 NFVDFHDSLDSPPRILLCSLQDGSLVLPLYEQPLTVPRIKRLQLEPPDIVQIQANDGTVL 311
V H SL +PPRI+ SL G PL E L P R + +V +++ DG+ +
Sbjct: 294 KLVTSHTSLSTPPRIV--SLPSGE---PLLEGGL--PEDLRRSIAGSRLVWVESFDGSRV 346
Query: 312 YGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNR 371
+ ES P P T++ V GGP + DSW D A L + G V + R
Sbjct: 347 PTYVL---ESGRAPTPGPTVVLVAGGPFAE-DSDSW----DTFAASLAAAGFHVVMPNYR 398
Query: 372 GTARRGLKFEASIKHN-CGRIDAEDQLTGAEWLIKQGLAKVGHIXXXXXXXXXXXXAITL 430
G+ G ++ I + CG + ED A W + GLA +I A+T+
Sbjct: 399 GSTGYGEEWRLKIIGDPCGG-ELEDVSAAARWARESGLASELYIMGYSYGGYMTLCALTM 457
Query: 431 ARFPDVFQCAVSGAPVTSW-------DGYDTFYTEKYMGLPSEDPVGYEYSSVMHHVHKM 483
P +F+ V+GA V W D + E+ G E S ++HV ++
Sbjct: 458 K--PGLFKAGVAGASVVDWEEMYELSDAAFRNFIEQLTGGSREI---MRSRSPINHVDRI 512
Query: 484 KGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRI 536
K L L+H D + RL+ L+A K +E I PD H D +
Sbjct: 513 KEPLALIHPQNDSRTPLKPLLRLMGELLARGKTFEAHIIPDAGHAINTMEDAV 565
>pdb|3O4J|A Chain A, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4J|B Chain B, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4J|C Chain C, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4J|D Chain D, Structure And Catalysis Of Acylaminoacyl Peptidase
Length = 582
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 82/293 (27%), Positives = 123/293 (41%), Gaps = 29/293 (9%)
Query: 252 NFVDFHDSLDSPPRILLCSLQDGSLVLPLYEQPLTVPRIKRLQLEPPDIVQIQANDGTVL 311
V H SL +PPRI+ SL G PL E L P R + +V +++ DG+ +
Sbjct: 294 KLVTSHTSLSTPPRIV--SLPSGE---PLLEGGL--PEDLRRSIAGSRLVWVESFDGSRV 346
Query: 312 YGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNR 371
+ ES P P T++ V+GGP + DSW D A L + G V + R
Sbjct: 347 PTYVL---ESGRAPTPGPTVVLVHGGPFAE-DSDSW----DTFAASLAAAGFHVVMPNYR 398
Query: 372 GTARRGLKFEASIKHN-CGRIDAEDQLTGAEWLIKQGLAKVGHIXXXXXXXXXXXXAITL 430
G+ G ++ I + CG + ED A W + GLA +I A+T+
Sbjct: 399 GSTGYGEEWRLKIIGDPCGG-ELEDVSAAARWARESGLASELYIMGYSYGGYMTLCALTM 457
Query: 431 ARFPDVFQCAVSGAPVTSW-------DGYDTFYTEKYMGLPSEDPVGYEYSSVMHHVHKM 483
P +F+ V+GA V W D + E+ G E S ++HV ++
Sbjct: 458 K--PGLFKAGVAGASVVDWEEMYELSDAAFRNFIEQLTGGSREI---MRSRSPINHVDRI 512
Query: 484 KGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRI 536
K L L+H + + RL+ L+A K +E I PD H D +
Sbjct: 513 KEPLALIHPQNNSRTPLKPLLRLMGELLARGKTFEAHIIPDAGHAINTMEDAV 565
>pdb|3O4H|A Chain A, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4H|B Chain B, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4H|C Chain C, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4H|D Chain D, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4I|A Chain A, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4I|B Chain B, Structure And Catalysis Of Acylaminoacyl Peptidase
Length = 582
Score = 72.4 bits (176), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 82/293 (27%), Positives = 122/293 (41%), Gaps = 29/293 (9%)
Query: 252 NFVDFHDSLDSPPRILLCSLQDGSLVLPLYEQPLTVPRIKRLQLEPPDIVQIQANDGTVL 311
V H SL +PPRI+ SL G PL E L P R + +V +++ DG+ +
Sbjct: 294 KLVTSHTSLSTPPRIV--SLPSGE---PLLEGGL--PEDLRRSIAGSRLVWVESFDGSRV 346
Query: 312 YGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNR 371
+ ES P P T++ V+GGP + DSW D A L + G V + R
Sbjct: 347 PTYVL---ESGRAPTPGPTVVLVHGGPFAE-DSDSW----DTFAASLAAAGFHVVMPNYR 398
Query: 372 GTARRGLKFEASIKHN-CGRIDAEDQLTGAEWLIKQGLAKVGHIXXXXXXXXXXXXAITL 430
G+ G ++ I + CG + ED A W + GLA +I A+T+
Sbjct: 399 GSTGYGEEWRLKIIGDPCGG-ELEDVSAAARWARESGLASELYIMGYSYGGYMTLCALTM 457
Query: 431 ARFPDVFQCAVSGAPVTSW-------DGYDTFYTEKYMGLPSEDPVGYEYSSVMHHVHKM 483
P +F+ V+GA V W D + E+ G E S ++HV ++
Sbjct: 458 K--PGLFKAGVAGASVVDWEEMYELSDAAFRNFIEQLTGGSREI---MRSRSPINHVDRI 512
Query: 484 KGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRI 536
K L L+H + RL+ L+A K +E I PD H D +
Sbjct: 513 KEPLALIHPQNASRTPLKPLLRLMGELLARGKTFEAHIIPDAGHAINTMEDAV 565
>pdb|3AZO|A Chain A, Crystal Structure Of Puromycin Hydrolase
pdb|3AZO|B Chain B, Crystal Structure Of Puromycin Hydrolase
Length = 662
Score = 58.5 bits (140), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 60/256 (23%), Positives = 100/256 (39%), Gaps = 21/256 (8%)
Query: 298 PDIVQIQANDGTVLYGALYKPDESRY-GP----PPYKTLISVYGGPCVQLVCDSWINTVD 352
P I A DG ++ +Y P + GP PPY ++ +GGP ++ +D
Sbjct: 391 PQIRTFTAPDGREIHAHIYPPHSPDFTGPADELPPY--VVXAHGGPTSRVPA-----VLD 443
Query: 353 MRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVG 412
+ Y S+GI V ++ G+ G + ++ G +D ED A L ++G A
Sbjct: 444 LDVAYFTSRGIGVADVNYGGSTGYGRAYRERLRGRWGVVDVEDCAAVATALAEEGTADRA 503
Query: 413 HIXXXXXXXXXXXXAITLARFPDVFQCAVSGAPV---TSW-DG----YDTFYTEKYMGLP 464
+ A +L DV+ C PV W DG +++ Y + +G
Sbjct: 504 RLAVRGGSAGGWTAASSLVST-DVYACGTVLYPVLDLLGWADGGTHDFESRYLDFLIGSF 562
Query: 465 SEDPVGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPD 524
E P Y + + +++ LL+ G+ D R + A+ P+ L F
Sbjct: 563 EEFPERYRDRAPLTRADRVRVPFLLLQGLEDPVCPPEQCDRFLEAVAGCGVPHAYLSFEG 622
Query: 525 ERHMPRRHRDRIYMEE 540
E H RR + E
Sbjct: 623 EGHGFRRKETXVRALE 638
>pdb|3AZP|A Chain A, Crystal Structure Of Puromycin Hydrolase S511a Mutant
pdb|3AZP|B Chain B, Crystal Structure Of Puromycin Hydrolase S511a Mutant
pdb|3AZQ|A Chain A, Crystal Structure Of Puromycin Hydrolase S511a Mutant
Complexed With Pgg
pdb|3AZQ|B Chain B, Crystal Structure Of Puromycin Hydrolase S511a Mutant
Complexed With Pgg
Length = 662
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 59/247 (23%), Positives = 98/247 (39%), Gaps = 21/247 (8%)
Query: 298 PDIVQIQANDGTVLYGALYKPDESRY-GP----PPYKTLISVYGGPCVQLVCDSWINTVD 352
P I A DG ++ +Y P + GP PPY ++ +GGP ++ +D
Sbjct: 391 PQIRTFTAPDGREIHAHIYPPHSPDFTGPADELPPY--VVMAHGGPTSRVPA-----VLD 443
Query: 353 MRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVG 412
+ Y S+GI V ++ G+ G + ++ G +D ED A L ++G A
Sbjct: 444 LDVAYFTSRGIGVADVNYGGSTGYGRAYRERLRGRWGVVDVEDCAAVATALAEEGTADRA 503
Query: 413 HIXXXXXXXXXXXXAITLARFPDVFQCAVSGAPV---TSW-DG----YDTFYTEKYMGLP 464
+ A +L DV+ C PV W DG +++ Y + +G
Sbjct: 504 RLAVRGGAAGGWTAASSLVST-DVYACGTVLYPVLDLLGWADGGTHDFESRYLDFLIGSF 562
Query: 465 SEDPVGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPD 524
E P Y + + +++ LL+ G+ D R + A+ P+ L F
Sbjct: 563 EEFPERYRDRAPLTRADRVRVPFLLLQGLEDPVCPPEQCDRFLEAVAGCGVPHAYLSFEG 622
Query: 525 ERHMPRR 531
E H RR
Sbjct: 623 EGHGFRR 629
>pdb|3UEM|A Chain A, Crystal Structure Of Human Pdi Bb'a' Domains
Length = 361
Score = 29.6 bits (65), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
Query: 208 LDGPLESHLYCAKLYPDWNHTLEAPVKLTNGKGKHVAVLDHNMRNFVDFH 257
L+G ++ HL +L DW+ + PVK+ GK D FV+F+
Sbjct: 229 LEGKIKPHLMSQELPEDWD---KQPVKVLVGKNFEDVAFDEKKNVFVEFY 275
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.138 0.437
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,134,155
Number of Sequences: 62578
Number of extensions: 799772
Number of successful extensions: 1836
Number of sequences better than 100.0: 39
Number of HSP's better than 100.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1671
Number of HSP's gapped (non-prelim): 44
length of query: 550
length of database: 14,973,337
effective HSP length: 104
effective length of query: 446
effective length of database: 8,465,225
effective search space: 3775490350
effective search space used: 3775490350
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)