Query 008873
Match_columns 550
No_of_seqs 369 out of 3837
Neff 10.5
Searched_HMMs 46136
Date Thu Mar 28 17:39:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008873.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008873hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2281 Dipeptidyl aminopeptid 100.0 1.6E-69 3.5E-74 515.6 42.1 538 1-548 264-866 (867)
2 KOG2100 Dipeptidyl aminopeptid 100.0 1.6E-56 3.4E-61 467.5 54.1 530 2-550 207-748 (755)
3 COG1506 DAP2 Dipeptidyl aminop 100.0 1E-48 2.2E-53 407.3 46.2 496 5-550 104-617 (620)
4 PRK10115 protease 2; Provision 100.0 3.9E-46 8.4E-51 389.6 50.3 481 5-549 130-675 (686)
5 PF00930 DPPIV_N: Dipeptidyl p 100.0 1.5E-35 3.2E-40 289.9 27.1 251 1-264 100-353 (353)
6 PF00326 Peptidase_S9: Prolyl 100.0 8.6E-35 1.9E-39 265.2 14.4 199 352-550 4-210 (213)
7 COG1770 PtrB Protease II [Amin 100.0 1.2E-29 2.6E-34 247.3 40.8 460 4-529 131-657 (682)
8 KOG2237 Predicted serine prote 100.0 3.1E-26 6.8E-31 221.5 34.5 293 249-549 392-705 (712)
9 COG1505 Serine proteases of th 100.0 7.1E-28 1.5E-32 231.8 21.1 292 245-550 346-647 (648)
10 PRK13604 luxD acyl transferase 99.9 3.7E-24 8E-29 197.5 19.9 214 298-531 9-247 (307)
11 PRK10566 esterase; Provisional 99.9 1.2E-23 2.6E-28 197.1 22.2 225 311-550 12-249 (249)
12 PLN02298 hydrolase, alpha/beta 99.9 2.3E-22 5E-27 196.4 24.2 242 295-550 29-318 (330)
13 PRK05077 frsA fermentation/res 99.9 1.8E-22 3.9E-27 200.1 23.3 229 297-550 167-413 (414)
14 PLN02442 S-formylglutathione h 99.9 1.7E-22 3.6E-27 191.2 21.4 245 296-549 16-280 (283)
15 TIGR02821 fghA_ester_D S-formy 99.9 2.4E-21 5.2E-26 183.1 23.1 242 297-550 12-275 (275)
16 PHA02857 monoglyceride lipase; 99.9 1.5E-21 3.4E-26 185.9 21.9 226 304-549 6-273 (276)
17 PRK04043 tolB translocation pr 99.9 7E-21 1.5E-25 188.7 25.7 209 6-281 192-408 (419)
18 PLN02385 hydrolase; alpha/beta 99.9 2.5E-21 5.3E-26 190.3 21.4 236 299-550 62-346 (349)
19 KOG1455 Lysophospholipase [Lip 99.9 1.4E-21 3E-26 174.6 17.4 239 297-549 26-312 (313)
20 PRK10749 lysophospholipase L2; 99.9 3.4E-21 7.3E-26 187.5 20.8 240 295-549 27-329 (330)
21 PF01738 DLH: Dienelactone hyd 99.9 9.8E-22 2.1E-26 179.6 15.9 204 311-550 1-218 (218)
22 PRK05137 tolB translocation pr 99.9 1.8E-20 3.9E-25 189.4 24.5 212 5-281 205-420 (435)
23 PRK03629 tolB translocation pr 99.9 1.1E-19 2.4E-24 182.4 24.6 212 5-282 202-415 (429)
24 COG1647 Esterase/lipase [Gener 99.9 1.4E-20 2.9E-25 159.6 14.8 202 329-548 16-243 (243)
25 PLN02652 hydrolase; alpha/beta 99.9 5.3E-20 1.2E-24 181.0 21.2 234 298-550 110-388 (395)
26 COG0412 Dienelactone hydrolase 99.9 1.1E-19 2.3E-24 165.6 21.3 214 299-550 3-234 (236)
27 PRK04792 tolB translocation pr 99.9 1.5E-19 3.3E-24 182.1 24.4 210 5-281 221-433 (448)
28 PRK10162 acetyl esterase; Prov 99.9 1.9E-19 4E-24 173.4 23.7 228 298-550 57-316 (318)
29 PF05448 AXE1: Acetyl xylan es 99.8 1.1E-20 2.4E-25 179.4 13.4 234 297-549 55-320 (320)
30 PRK02889 tolB translocation pr 99.8 4.5E-19 9.7E-24 178.3 24.7 211 5-281 199-411 (427)
31 PRK00178 tolB translocation pr 99.8 3.9E-19 8.5E-24 180.0 24.2 211 5-281 202-414 (430)
32 PRK05371 x-prolyl-dipeptidyl a 99.8 4.5E-19 9.7E-24 187.2 25.2 191 354-550 271-520 (767)
33 PRK01029 tolB translocation pr 99.8 1.2E-18 2.6E-23 174.2 24.9 192 59-282 211-412 (428)
34 PRK04922 tolB translocation pr 99.8 8.4E-19 1.8E-23 177.0 23.4 211 5-281 207-419 (433)
35 KOG1552 Predicted alpha/beta h 99.8 3E-19 6.5E-24 156.6 17.2 216 297-547 34-250 (258)
36 COG2267 PldB Lysophospholipase 99.8 5.5E-19 1.2E-23 167.1 19.5 232 298-550 9-295 (298)
37 TIGR01840 esterase_phb esteras 99.8 2.2E-19 4.7E-24 163.1 14.5 191 313-513 1-197 (212)
38 KOG4391 Predicted alpha/beta h 99.8 2E-19 4.3E-24 151.0 11.5 225 297-549 53-282 (300)
39 PRK11460 putative hydrolase; P 99.8 3.9E-18 8.5E-23 156.3 19.5 185 326-550 14-209 (232)
40 PRK01029 tolB translocation pr 99.8 2.9E-17 6.3E-22 164.2 26.6 194 59-283 165-369 (428)
41 PRK04043 tolB translocation pr 99.8 5.1E-17 1.1E-21 161.2 27.9 192 58-283 168-367 (419)
42 PRK03629 tolB translocation pr 99.8 1.4E-16 2.9E-21 160.1 28.4 192 58-282 178-372 (429)
43 COG3458 Acetyl esterase (deace 99.8 3E-18 6.5E-23 149.5 12.9 217 298-529 56-301 (321)
44 PRK10985 putative hydrolase; P 99.8 2.1E-17 4.5E-22 160.4 20.0 235 297-549 30-320 (324)
45 TIGR00976 /NonD putative hydro 99.8 2.6E-17 5.6E-22 170.8 21.6 230 304-550 2-304 (550)
46 COG0823 TolB Periplasmic compo 99.8 1.7E-17 3.7E-22 163.1 18.1 207 6-276 197-405 (425)
47 PF02129 Peptidase_S15: X-Pro 99.8 6E-18 1.3E-22 159.8 14.3 212 307-528 1-271 (272)
48 PRK00870 haloalkane dehalogena 99.8 5.9E-17 1.3E-21 156.3 21.3 233 290-549 14-301 (302)
49 PRK05137 tolB translocation pr 99.8 1.6E-16 3.5E-21 160.6 25.3 192 58-282 181-375 (435)
50 TIGR03343 biphenyl_bphD 2-hydr 99.8 2.9E-17 6.4E-22 157.1 17.9 201 329-547 31-281 (282)
51 PRK01742 tolB translocation pr 99.8 1.7E-16 3.6E-21 159.9 23.9 205 4-281 206-412 (429)
52 PLN02511 hydrolase 99.8 4.2E-17 9.2E-22 161.4 19.2 237 297-548 70-364 (388)
53 PF12695 Abhydrolase_5: Alpha/ 99.8 1.7E-17 3.7E-22 141.5 14.2 145 330-528 1-145 (145)
54 TIGR01607 PST-A Plasmodium sub 99.7 7.9E-17 1.7E-21 156.2 19.7 236 303-547 2-331 (332)
55 TIGR03100 hydr1_PEP hydrolase, 99.7 1.9E-16 4.2E-21 149.6 21.3 231 299-548 3-274 (274)
56 PRK04792 tolB translocation pr 99.7 1E-15 2.2E-20 154.4 27.7 191 59-282 198-391 (448)
57 TIGR03611 RutD pyrimidine util 99.7 5E-17 1.1E-21 153.0 17.2 199 327-547 12-256 (257)
58 PRK02889 tolB translocation pr 99.7 8.6E-16 1.9E-20 154.6 26.8 191 59-282 176-369 (427)
59 COG0657 Aes Esterase/lipase [L 99.7 1.6E-16 3.4E-21 153.7 20.1 223 305-548 58-309 (312)
60 PF06500 DUF1100: Alpha/beta h 99.7 3E-17 6.5E-22 156.4 14.6 230 294-550 161-410 (411)
61 TIGR02800 propeller_TolB tol-p 99.7 3.5E-16 7.6E-21 158.4 23.3 211 5-281 193-405 (417)
62 PRK03592 haloalkane dehalogena 99.7 2.1E-16 4.5E-21 152.0 20.0 212 307-549 15-289 (295)
63 PLN02824 hydrolase, alpha/beta 99.7 2.1E-16 4.5E-21 151.9 19.4 205 329-549 30-294 (294)
64 TIGR03056 bchO_mg_che_rel puta 99.7 3E-16 6.6E-21 149.7 20.1 217 302-547 9-278 (278)
65 TIGR02427 protocat_pcaD 3-oxoa 99.7 2.9E-17 6.3E-22 153.9 12.8 197 327-546 12-250 (251)
66 PRK00178 tolB translocation pr 99.7 3.3E-15 7.2E-20 151.4 28.0 191 59-282 179-372 (430)
67 PRK04922 tolB translocation pr 99.7 2.5E-15 5.4E-20 151.8 26.8 193 58-283 183-378 (433)
68 TIGR02240 PHA_depoly_arom poly 99.7 2.7E-16 5.9E-21 149.6 18.8 213 307-549 10-266 (276)
69 PLN02965 Probable pheophorbida 99.7 2.2E-16 4.9E-21 148.2 17.8 198 330-548 5-252 (255)
70 PRK10673 acyl-CoA esterase; Pr 99.7 2.2E-16 4.8E-21 148.6 16.1 200 326-549 14-255 (255)
71 PLN02872 triacylglycerol lipas 99.7 1.9E-16 4.2E-21 155.0 15.6 246 294-549 40-389 (395)
72 COG2945 Predicted hydrolase of 99.7 6.9E-16 1.5E-20 128.2 16.1 201 299-547 5-205 (210)
73 TIGR01250 pro_imino_pep_2 prol 99.7 5.9E-16 1.3E-20 148.3 18.5 201 328-547 25-288 (288)
74 PF02230 Abhydrolase_2: Phosph 99.7 3E-16 6.5E-21 142.8 15.3 116 407-550 100-216 (216)
75 PF10503 Esterase_phd: Esteras 99.7 4.4E-16 9.5E-21 138.4 15.6 194 311-513 1-198 (220)
76 PLN02679 hydrolase, alpha/beta 99.7 1.1E-15 2.5E-20 150.3 20.3 218 310-548 73-356 (360)
77 PRK01742 tolB translocation pr 99.7 8.4E-15 1.8E-19 147.7 26.9 184 59-281 184-369 (429)
78 COG0429 Predicted hydrolase of 99.7 7.8E-16 1.7E-20 139.9 17.0 235 297-550 48-341 (345)
79 PLN03087 BODYGUARD 1 domain co 99.7 1.9E-15 4.1E-20 150.7 21.2 224 302-548 179-478 (481)
80 TIGR01249 pro_imino_pep_1 prol 99.7 1.3E-15 2.9E-20 146.8 18.5 219 301-550 7-306 (306)
81 KOG1515 Arylacetamide deacetyl 99.7 5.4E-15 1.2E-19 139.5 21.2 225 307-549 70-335 (336)
82 PF12715 Abhydrolase_7: Abhydr 99.7 8.5E-17 1.8E-21 150.3 8.6 220 297-524 87-343 (390)
83 TIGR03695 menH_SHCHC 2-succiny 99.7 2E-15 4.3E-20 141.2 17.3 197 329-547 2-251 (251)
84 PLN02894 hydrolase, alpha/beta 99.7 5.6E-15 1.2E-19 146.9 21.1 204 327-550 104-386 (402)
85 PLN00021 chlorophyllase 99.7 6.5E-15 1.4E-19 139.9 20.6 181 309-528 37-240 (313)
86 TIGR01738 bioH putative pimelo 99.7 1.7E-15 3.7E-20 141.3 16.2 190 329-546 5-245 (245)
87 PRK14875 acetoin dehydrogenase 99.7 3.9E-15 8.4E-20 148.4 19.6 196 328-549 131-371 (371)
88 PRK10349 carboxylesterase BioH 99.7 2.1E-15 4.5E-20 141.9 16.4 191 329-547 14-254 (256)
89 PRK06489 hypothetical protein; 99.7 4.8E-15 1E-19 146.2 19.5 207 328-549 69-357 (360)
90 COG4099 Predicted peptidase [G 99.7 1.1E-15 2.4E-20 135.0 12.6 187 300-523 162-354 (387)
91 PLN02578 hydrolase 99.6 5.3E-15 1.2E-19 145.4 18.0 195 329-547 87-353 (354)
92 PRK03204 haloalkane dehalogena 99.6 1.6E-14 3.4E-19 137.8 20.5 196 329-546 35-285 (286)
93 TIGR01836 PHA_synth_III_C poly 99.6 1.4E-14 3.1E-19 142.3 20.4 223 311-549 48-350 (350)
94 PRK11071 esterase YqiA; Provis 99.6 2.1E-15 4.6E-20 133.4 13.2 174 329-547 2-189 (190)
95 PF07859 Abhydrolase_3: alpha/ 99.6 5.3E-16 1.2E-20 141.3 9.3 178 331-529 1-209 (211)
96 PRK07581 hypothetical protein; 99.6 4E-15 8.6E-20 145.9 16.1 229 307-550 24-337 (339)
97 TIGR01392 homoserO_Ac_trn homo 99.6 8E-15 1.7E-19 144.2 18.2 234 307-547 14-351 (351)
98 KOG1838 Alpha/beta hydrolase [ 99.6 2E-14 4.4E-19 136.0 19.9 241 293-548 88-387 (409)
99 COG0823 TolB Periplasmic compo 99.6 1.3E-14 2.9E-19 142.7 18.7 194 59-283 173-369 (425)
100 KOG4178 Soluble epoxide hydrol 99.6 2.4E-14 5.2E-19 130.8 18.7 205 327-549 43-320 (322)
101 PF12697 Abhydrolase_6: Alpha/ 99.6 9.5E-16 2.1E-20 141.1 9.2 179 331-529 1-217 (228)
102 COG0400 Predicted esterase [Ge 99.6 1.5E-14 3.2E-19 127.2 15.9 127 393-550 80-206 (207)
103 PF08840 BAAT_C: BAAT / Acyl-C 99.6 7E-15 1.5E-19 132.3 14.3 157 393-550 3-211 (213)
104 TIGR03101 hydr2_PEP hydrolase, 99.6 3E-14 6.4E-19 131.6 18.5 211 300-525 2-243 (266)
105 PRK11126 2-succinyl-6-hydroxy- 99.6 1.1E-14 2.4E-19 135.8 15.8 189 329-548 3-241 (242)
106 PRK08775 homoserine O-acetyltr 99.6 9.6E-15 2.1E-19 143.1 14.5 176 357-548 94-338 (343)
107 PRK00175 metX homoserine O-ace 99.6 5.3E-14 1.2E-18 139.4 19.0 236 307-549 31-374 (379)
108 PLN03084 alpha/beta hydrolase 99.6 5.8E-14 1.3E-18 137.4 17.3 215 306-547 112-382 (383)
109 PLN02211 methyl indole-3-aceta 99.6 3.2E-13 6.8E-18 127.5 20.7 199 327-546 17-267 (273)
110 TIGR02800 propeller_TolB tol-p 99.6 2E-12 4.4E-17 130.9 27.5 191 58-281 169-362 (417)
111 COG2936 Predicted acyl esteras 99.6 1.2E-13 2.6E-18 136.4 17.2 216 297-528 18-291 (563)
112 KOG4409 Predicted hydrolase/ac 99.6 1.8E-13 3.9E-18 125.3 16.8 205 327-549 89-364 (365)
113 KOG3043 Predicted hydrolase re 99.6 1.6E-13 3.4E-18 117.2 15.1 169 352-550 57-241 (242)
114 PRK10439 enterobactin/ferric e 99.5 3E-12 6.5E-17 126.4 21.2 206 295-529 177-392 (411)
115 PRK06765 homoserine O-acetyltr 99.5 1.4E-12 3E-17 128.1 18.3 234 309-549 41-388 (389)
116 COG3509 LpqC Poly(3-hydroxybut 99.5 1.7E-12 3.7E-17 116.2 15.9 231 299-549 36-307 (312)
117 KOG1454 Predicted hydrolase/ac 99.5 1.3E-12 2.9E-17 125.0 15.8 203 327-549 57-324 (326)
118 PLN02980 2-oxoglutarate decarb 99.5 2.6E-12 5.6E-17 147.7 20.1 210 327-548 1370-1638(1655)
119 PF00756 Esterase: Putative es 99.4 2.4E-13 5.2E-18 127.4 7.5 219 308-546 5-251 (251)
120 TIGR01838 PHA_synth_I poly(R)- 99.4 1.7E-11 3.7E-16 123.8 19.6 210 300-529 166-456 (532)
121 KOG3101 Esterase D [General fu 99.4 8.1E-13 1.8E-17 111.1 8.4 215 308-530 25-263 (283)
122 KOG4667 Predicted esterase [Li 99.4 9.1E-12 2E-16 105.4 14.0 212 297-534 9-245 (269)
123 PRK05855 short chain dehydroge 99.4 5.2E-12 1.1E-16 134.0 16.1 214 305-548 9-291 (582)
124 PF12740 Chlorophyllase2: Chlo 99.4 1.7E-11 3.7E-16 110.4 16.5 178 312-528 5-205 (259)
125 KOG2564 Predicted acetyltransf 99.3 1.4E-11 3E-16 108.7 12.4 127 297-443 49-178 (343)
126 PF03583 LIP: Secretory lipase 99.3 8.3E-12 1.8E-16 117.8 11.7 186 355-550 19-282 (290)
127 KOG2984 Predicted hydrolase [G 99.3 1.8E-12 3.9E-17 108.3 6.1 217 307-549 29-276 (277)
128 PF03403 PAF-AH_p_II: Platelet 99.3 2.4E-11 5.3E-16 118.6 15.0 189 326-550 98-359 (379)
129 COG4757 Predicted alpha/beta h 99.3 1.9E-11 4.2E-16 104.8 12.3 229 301-546 8-280 (281)
130 COG4946 Uncharacterized protei 99.3 1.1E-10 2.4E-15 109.6 18.1 183 60-275 60-298 (668)
131 KOG4627 Kynurenine formamidase 99.3 1.7E-11 3.8E-16 102.8 10.3 211 289-528 36-247 (270)
132 PF00930 DPPIV_N: Dipeptidyl p 99.2 8.7E-10 1.9E-14 108.3 20.2 228 4-283 45-326 (353)
133 PF08538 DUF1749: Protein of u 99.2 6.8E-11 1.5E-15 108.5 11.4 207 329-547 34-303 (303)
134 PF00561 Abhydrolase_1: alpha/ 99.2 2.8E-11 6.1E-16 111.7 7.7 157 363-529 1-216 (230)
135 PRK07868 acyl-CoA synthetase; 99.2 5.1E-10 1.1E-14 124.6 18.9 230 298-549 39-361 (994)
136 PF14583 Pectate_lyase22: Olig 99.2 1.1E-08 2.5E-13 96.9 23.4 150 112-276 167-332 (386)
137 COG4188 Predicted dienelactone 99.2 2.1E-10 4.6E-15 107.1 11.1 129 299-434 39-181 (365)
138 TIGR01839 PHA_synth_II poly(R) 99.1 2E-09 4.4E-14 107.5 17.8 209 299-528 192-481 (560)
139 COG0627 Predicted esterase [Ge 99.1 7.2E-10 1.6E-14 104.4 13.7 212 326-550 52-312 (316)
140 cd00312 Esterase_lipase Estera 99.1 1E-10 2.2E-15 120.9 8.4 128 311-448 79-214 (493)
141 PF05728 UPF0227: Uncharacteri 99.1 2.4E-09 5.1E-14 93.3 15.5 173 331-546 2-186 (187)
142 PF02273 Acyl_transf_2: Acyl t 99.1 5.8E-09 1.2E-13 90.7 16.5 210 301-530 5-239 (294)
143 COG3571 Predicted hydrolase of 99.1 9.8E-09 2.1E-13 82.9 16.1 185 329-548 15-210 (213)
144 COG2382 Fes Enterochelin ester 99.1 6E-09 1.3E-13 94.6 16.3 205 299-530 70-282 (299)
145 KOG2382 Predicted alpha/beta h 99.1 1.9E-09 4.1E-14 99.2 12.3 205 326-549 50-313 (315)
146 PF06342 DUF1057: Alpha/beta h 99.1 1.7E-08 3.7E-13 90.6 17.7 103 327-446 34-136 (297)
147 KOG2624 Triglyceride lipase-ch 99.1 6.6E-09 1.4E-13 100.6 16.3 241 294-549 44-398 (403)
148 COG2819 Predicted hydrolase of 99.0 2.5E-08 5.4E-13 89.4 18.5 125 403-547 128-259 (264)
149 KOG3847 Phospholipase A2 (plat 99.0 7.6E-09 1.6E-13 93.0 13.7 189 326-550 116-372 (399)
150 COG2272 PnbA Carboxylesterase 99.0 7.6E-10 1.6E-14 106.9 7.8 130 311-448 80-218 (491)
151 PF02897 Peptidase_S9_N: Proly 99.0 1.3E-07 2.7E-12 95.7 24.2 221 6-276 174-408 (414)
152 KOG2112 Lysophospholipase [Lip 99.0 1.7E-08 3.6E-13 86.5 14.7 116 407-548 88-203 (206)
153 PF06821 Ser_hydrolase: Serine 99.0 8.9E-09 1.9E-13 88.8 12.7 152 331-529 1-154 (171)
154 COG2021 MET2 Homoserine acetyl 99.0 3.7E-08 8E-13 92.1 17.5 218 326-548 49-367 (368)
155 PF07224 Chlorophyllase: Chlor 98.9 2.3E-08 5.1E-13 88.0 13.3 180 310-528 32-230 (307)
156 cd00707 Pancreat_lipase_like P 98.9 7.4E-09 1.6E-13 97.3 10.7 112 327-447 35-147 (275)
157 PF02897 Peptidase_S9_N: Proly 98.9 6E-07 1.3E-11 90.7 24.3 215 5-275 127-360 (414)
158 KOG1553 Predicted alpha/beta h 98.9 4.8E-09 1E-13 95.4 7.2 184 298-499 214-398 (517)
159 PF09752 DUF2048: Uncharacteri 98.9 4.1E-08 9E-13 91.7 12.9 222 311-547 77-347 (348)
160 COG0596 MhpC Predicted hydrola 98.8 1.4E-07 3.1E-12 88.5 17.2 99 329-446 22-122 (282)
161 PF00135 COesterase: Carboxyle 98.8 6E-09 1.3E-13 109.4 8.3 127 311-446 109-244 (535)
162 COG4946 Uncharacterized protei 98.8 1.7E-07 3.6E-12 88.7 15.3 125 59-208 382-509 (668)
163 COG3208 GrsT Predicted thioest 98.8 2.3E-07 4.9E-12 81.9 14.4 194 329-547 9-234 (244)
164 TIGR02658 TTQ_MADH_Hv methylam 98.8 9.3E-06 2E-10 77.9 26.3 116 155-280 206-338 (352)
165 TIGR03230 lipo_lipase lipoprot 98.7 5.3E-08 1.1E-12 95.8 10.7 113 327-447 40-154 (442)
166 PF03959 FSH1: Serine hydrolas 98.7 4.6E-08 1E-12 88.4 9.6 175 327-529 3-202 (212)
167 COG1073 Hydrolases of the alph 98.7 8.9E-08 1.9E-12 92.1 11.0 78 471-550 218-298 (299)
168 TIGR01849 PHB_depoly_PhaZ poly 98.7 5.2E-07 1.1E-11 87.9 15.1 71 479-549 332-406 (406)
169 PF08662 eIF2A: Eukaryotic tra 98.6 3.4E-06 7.5E-11 74.8 18.1 151 5-207 9-163 (194)
170 PF06057 VirJ: Bacterial virul 98.6 1.6E-06 3.5E-11 74.0 14.6 183 330-548 4-191 (192)
171 PF10340 DUF2424: Protein of u 98.6 1.8E-06 4E-11 82.3 15.9 200 312-528 107-349 (374)
172 KOG2551 Phospholipase/carboxyh 98.6 1.1E-06 2.4E-11 76.0 12.4 186 327-549 4-220 (230)
173 PRK13616 lipoprotein LpqB; Pro 98.6 3.8E-06 8.3E-11 86.9 18.2 157 5-226 353-529 (591)
174 PRK04940 hypothetical protein; 98.5 2.6E-06 5.6E-11 72.6 13.7 116 412-548 60-179 (180)
175 TIGR03866 PQQ_ABC_repeats PQQ- 98.5 5.7E-05 1.2E-09 72.5 24.9 182 60-280 54-245 (300)
176 PF10230 DUF2305: Uncharacteri 98.5 2.6E-06 5.6E-11 79.6 14.3 192 328-529 2-265 (266)
177 PF12146 Hydrolase_4: Putative 98.5 6.5E-07 1.4E-11 66.0 7.8 59 308-378 1-59 (79)
178 TIGR03502 lipase_Pla1_cef extr 98.5 5.9E-07 1.3E-11 94.2 10.4 99 327-432 448-575 (792)
179 PF14583 Pectate_lyase22: Olig 98.5 2.9E-06 6.3E-11 80.8 14.0 159 41-221 197-382 (386)
180 PF11339 DUF3141: Protein of u 98.5 6.7E-06 1.4E-10 80.1 16.6 191 317-528 58-348 (581)
181 PF11144 DUF2920: Protein of u 98.5 1.3E-05 2.7E-10 76.8 18.2 134 392-525 162-334 (403)
182 PF06028 DUF915: Alpha/beta hy 98.5 1.5E-06 3.3E-11 79.6 11.5 206 327-547 11-253 (255)
183 KOG0293 WD40 repeat-containing 98.5 2.2E-05 4.8E-10 73.4 18.7 153 87-274 269-427 (519)
184 TIGR03866 PQQ_ABC_repeats PQQ- 98.5 0.0001 2.2E-09 70.8 24.3 182 60-281 96-288 (300)
185 PF05677 DUF818: Chlamydia CHL 98.4 3.1E-06 6.6E-11 78.4 11.6 181 293-494 107-300 (365)
186 COG3545 Predicted esterase of 98.4 2.9E-05 6.2E-10 64.8 16.1 135 391-547 41-177 (181)
187 COG3243 PhaC Poly(3-hydroxyalk 98.4 3.6E-06 7.8E-11 80.1 12.2 126 311-449 93-219 (445)
188 KOG3253 Predicted alpha/beta h 98.4 6.9E-06 1.5E-10 80.8 13.6 167 327-530 175-347 (784)
189 PF08662 eIF2A: Eukaryotic tra 98.3 5.8E-05 1.2E-09 67.0 17.5 144 91-259 9-164 (194)
190 PRK13616 lipoprotein LpqB; Pro 98.2 9.7E-05 2.1E-09 76.7 18.6 162 88-276 350-530 (591)
191 PF10142 PhoPQ_related: PhoPQ- 98.2 0.00018 3.8E-09 69.4 18.4 134 407-548 167-319 (367)
192 cd00200 WD40 WD40 domain, foun 98.2 0.0024 5.2E-08 60.1 26.2 201 4-280 12-215 (289)
193 PF12048 DUF3530: Protein of u 98.2 0.00035 7.5E-09 66.7 20.0 221 293-549 57-309 (310)
194 PF08450 SGL: SMP-30/Gluconola 98.1 0.0069 1.5E-07 56.3 28.1 208 60-313 23-242 (246)
195 KOG1516 Carboxylesterase and r 98.1 8.5E-06 1.9E-10 85.5 8.3 129 311-446 97-231 (545)
196 KOG0266 WD40 repeat-containing 98.1 0.0027 5.8E-08 64.8 25.5 184 60-282 226-419 (456)
197 PF10282 Lactonase: Lactonase, 98.0 0.0032 6.9E-08 61.8 24.8 169 90-275 146-327 (345)
198 COG4947 Uncharacterized protei 98.0 1.9E-05 4.1E-10 64.9 6.8 117 399-529 90-216 (227)
199 KOG0271 Notchless-like WD40 re 98.0 0.0011 2.4E-08 61.8 18.4 71 241-318 370-440 (480)
200 KOG1407 WD40 repeat protein [F 98.0 0.0035 7.5E-08 55.7 20.6 178 60-281 88-270 (313)
201 cd00200 WD40 WD40 domain, foun 98.0 0.005 1.1E-07 57.8 24.3 180 60-280 74-257 (289)
202 KOG0279 G protein beta subunit 98.0 0.0089 1.9E-07 53.7 23.0 182 59-277 85-267 (315)
203 PF07519 Tannase: Tannase and 97.9 0.00069 1.5E-08 68.7 18.5 130 309-448 15-151 (474)
204 PF03096 Ndr: Ndr family; Int 97.9 0.0003 6.5E-09 64.6 13.9 226 302-547 3-277 (283)
205 KOG1273 WD40 repeat protein [G 97.9 0.0029 6.2E-08 57.7 19.5 108 190-308 200-314 (405)
206 KOG0273 Beta-transducin family 97.9 0.0027 5.9E-08 60.9 20.0 174 5-251 239-414 (524)
207 PTZ00472 serine carboxypeptida 97.9 7.8E-05 1.7E-09 75.4 10.7 145 299-449 50-218 (462)
208 KOG0291 WD40-repeat-containing 97.9 0.0068 1.5E-07 61.7 23.4 176 61-275 374-553 (893)
209 PF02239 Cytochrom_D1: Cytochr 97.9 0.0063 1.4E-07 59.9 23.3 128 60-207 59-191 (369)
210 COG4814 Uncharacterized protei 97.8 0.00015 3.3E-09 64.0 10.1 209 327-548 45-286 (288)
211 PF07819 PGAP1: PGAP1-like pro 97.8 0.00012 2.6E-09 66.5 9.6 76 361-445 38-121 (225)
212 KOG0315 G-protein beta subunit 97.8 0.0061 1.3E-07 53.8 18.6 177 60-273 62-246 (311)
213 KOG0293 WD40 repeat-containing 97.8 0.00083 1.8E-08 63.2 13.9 213 61-319 293-513 (519)
214 COG3150 Predicted esterase [Ge 97.8 0.00053 1.1E-08 56.6 11.1 135 394-547 43-187 (191)
215 PF01674 Lipase_2: Lipase (cla 97.7 9.5E-05 2.1E-09 66.1 7.3 90 329-432 3-95 (219)
216 PRK11028 6-phosphogluconolacto 97.7 0.0081 1.7E-07 58.7 21.6 76 194-275 234-309 (330)
217 PF05705 DUF829: Eukaryotic pr 97.7 0.0019 4.2E-08 59.7 16.2 64 483-546 177-240 (240)
218 KOG2139 WD40 repeat protein [G 97.7 0.0013 2.7E-08 61.1 14.1 153 86-260 194-367 (445)
219 KOG0266 WD40 repeat-containing 97.7 0.021 4.6E-07 58.2 24.5 166 85-280 201-372 (456)
220 PF00151 Lipase: Lipase; Inte 97.7 7.9E-05 1.7E-09 71.6 6.1 114 326-447 69-187 (331)
221 PF05577 Peptidase_S28: Serine 97.6 9.4E-05 2E-09 75.1 6.3 116 328-448 29-149 (434)
222 KOG1446 Histone H3 (Lys4) meth 97.6 0.054 1.2E-06 49.7 26.5 180 60-282 81-272 (311)
223 KOG2055 WD40 repeat protein [G 97.6 0.0036 7.8E-08 60.0 15.9 179 61-272 282-467 (514)
224 KOG0271 Notchless-like WD40 re 97.6 0.0018 3.9E-08 60.4 13.6 116 87-220 157-276 (480)
225 KOG0272 U4/U6 small nuclear ri 97.6 0.001 2.2E-08 62.9 12.1 184 1-255 261-447 (459)
226 COG2706 3-carboxymuconate cycl 97.6 0.0073 1.6E-07 56.4 17.1 118 57-184 213-332 (346)
227 PRK10115 protease 2; Provision 97.6 0.032 7E-07 59.8 24.7 114 88-218 127-253 (686)
228 PF02239 Cytochrom_D1: Cytochr 97.6 0.032 6.9E-07 55.0 22.8 182 60-279 17-209 (369)
229 KOG2931 Differentiation-relate 97.6 0.0077 1.7E-07 54.9 16.6 229 298-546 22-303 (326)
230 PTZ00421 coronin; Provisional 97.5 0.064 1.4E-06 55.0 25.6 164 87-276 125-294 (493)
231 KOG2314 Translation initiation 97.5 0.02 4.3E-07 56.4 20.1 163 89-272 348-525 (698)
232 PF00450 Peptidase_S10: Serine 97.5 0.0011 2.4E-08 67.1 12.7 144 301-449 16-183 (415)
233 KOG2139 WD40 repeat protein [G 97.5 0.0074 1.6E-07 56.1 16.1 177 61-271 122-310 (445)
234 KOG4840 Predicted hydrolases o 97.5 0.0024 5.3E-08 55.3 11.7 89 352-450 56-147 (299)
235 KOG0645 WD40 repeat protein [G 97.5 0.055 1.2E-06 48.6 20.3 152 5-218 65-223 (312)
236 PLN02733 phosphatidylcholine-s 97.4 0.00037 8.1E-09 69.5 7.7 88 350-446 109-200 (440)
237 PF10282 Lactonase: Lactonase, 97.4 0.06 1.3E-06 52.8 23.3 190 59-272 15-222 (345)
238 KOG2055 WD40 repeat protein [G 97.4 0.0037 8.1E-08 59.9 13.7 167 60-256 326-500 (514)
239 PF00975 Thioesterase: Thioest 97.4 0.00041 8.9E-09 63.8 7.2 97 330-445 2-102 (229)
240 COG3386 Gluconolactonase [Carb 97.4 0.061 1.3E-06 51.2 21.7 50 167-221 143-192 (307)
241 PRK11028 6-phosphogluconolacto 97.4 0.08 1.7E-06 51.7 23.5 185 60-272 13-205 (330)
242 COG2706 3-carboxymuconate cycl 97.4 0.087 1.9E-06 49.4 21.6 176 89-282 41-232 (346)
243 COG3386 Gluconolactonase [Carb 97.4 0.0088 1.9E-07 56.8 15.7 147 57-221 141-297 (307)
244 PF07676 PD40: WD40-like Beta 97.4 0.00044 9.6E-09 43.1 4.7 31 87-117 8-39 (39)
245 PF10647 Gmad1: Lipoprotein Lp 97.4 0.057 1.2E-06 50.2 20.8 166 88-271 24-196 (253)
246 PF05990 DUF900: Alpha/beta hy 97.3 0.00088 1.9E-08 61.2 8.4 140 327-498 17-167 (233)
247 KOG3975 Uncharacterized conser 97.3 0.0096 2.1E-07 52.8 14.2 116 308-432 10-130 (301)
248 COG1506 DAP2 Dipeptidyl aminop 97.3 0.011 2.3E-07 62.9 17.5 208 3-259 14-236 (620)
249 PF07082 DUF1350: Protein of u 97.3 0.005 1.1E-07 55.2 12.3 185 313-528 8-204 (250)
250 PTZ00420 coronin; Provisional 97.3 0.032 7E-07 57.7 19.9 54 60-126 149-202 (568)
251 PTZ00420 coronin; Provisional 97.3 0.24 5.2E-06 51.4 26.0 117 87-221 125-247 (568)
252 PF06433 Me-amine-dh_H: Methyl 97.2 0.14 3.1E-06 48.5 21.6 116 155-281 196-329 (342)
253 PF07433 DUF1513: Protein of u 97.2 0.18 4E-06 47.2 22.2 213 2-277 5-252 (305)
254 KOG0318 WD40 repeat stress pro 97.2 0.17 3.7E-06 49.8 22.3 40 85-128 188-227 (603)
255 PF08450 SGL: SMP-30/Gluconola 97.2 0.014 3E-07 54.3 14.8 150 92-272 4-164 (246)
256 KOG0973 Histone transcription 97.1 0.015 3.3E-07 61.7 15.7 104 87-207 129-239 (942)
257 KOG2314 Translation initiation 97.1 0.052 1.1E-06 53.6 18.2 198 4-260 349-559 (698)
258 KOG0772 Uncharacterized conser 97.1 0.027 6E-07 54.9 15.9 119 189-320 367-489 (641)
259 KOG0275 Conserved WD40 repeat- 97.1 0.016 3.5E-07 53.0 13.5 50 167-221 415-466 (508)
260 KOG0291 WD40-repeat-containing 97.1 0.17 3.8E-06 52.0 21.9 42 60-109 36-77 (893)
261 PF07676 PD40: WD40-like Beta 97.1 0.00092 2E-08 41.7 4.0 38 180-218 2-39 (39)
262 KOG0263 Transcription initiati 97.0 0.023 5E-07 58.3 14.7 165 85-281 449-616 (707)
263 KOG2096 WD40 repeat protein [G 97.0 0.092 2E-06 48.3 16.9 85 167-257 209-297 (420)
264 KOG4389 Acetylcholinesterase/B 96.9 0.0011 2.5E-08 64.3 4.9 125 311-447 121-255 (601)
265 PF10647 Gmad1: Lipoprotein Lp 96.9 0.15 3.2E-06 47.4 18.9 173 4-186 26-208 (253)
266 KOG1407 WD40 repeat protein [F 96.9 0.099 2.1E-06 46.8 15.9 73 179-262 224-296 (313)
267 TIGR02658 TTQ_MADH_Hv methylam 96.8 0.13 2.8E-06 49.9 18.0 115 91-221 197-329 (352)
268 PF11187 DUF2974: Protein of u 96.8 0.0035 7.6E-08 56.6 6.8 76 370-446 43-122 (224)
269 KOG2096 WD40 repeat protein [G 96.8 0.18 3.8E-06 46.5 17.3 223 2-256 133-391 (420)
270 PF06433 Me-amine-dh_H: Methyl 96.8 0.52 1.1E-05 44.9 21.1 197 60-281 68-286 (342)
271 KOG2183 Prolylcarboxypeptidase 96.8 0.0044 9.5E-08 59.1 7.3 91 354-446 103-202 (492)
272 PTZ00421 coronin; Provisional 96.8 0.18 3.9E-06 51.7 19.5 54 60-125 149-202 (493)
273 PLN03016 sinapoylglucose-malat 96.7 0.0061 1.3E-07 61.1 8.7 62 485-548 348-430 (433)
274 COG3319 Thioesterase domains o 96.7 0.0029 6.3E-08 58.1 5.8 100 329-448 1-104 (257)
275 PF08386 Abhydrolase_4: TAP-li 96.7 0.0049 1.1E-07 48.2 6.3 59 484-547 34-92 (103)
276 COG3946 VirJ Type IV secretory 96.7 0.0072 1.6E-07 57.6 8.4 163 353-546 278-446 (456)
277 KOG2565 Predicted hydrolases o 96.7 0.0066 1.4E-07 57.0 7.8 119 307-442 132-259 (469)
278 KOG2182 Hydrolytic enzymes of 96.7 0.0083 1.8E-07 58.9 8.5 117 327-447 85-207 (514)
279 KOG1282 Serine carboxypeptidas 96.7 0.02 4.3E-07 57.1 11.3 145 299-448 47-214 (454)
280 KOG1274 WD40 repeat protein [G 96.6 0.5 1.1E-05 49.9 21.4 152 89-272 98-262 (933)
281 KOG2394 WD40 protein DMR-N9 [G 96.6 0.0017 3.8E-08 63.3 3.6 68 5-118 294-361 (636)
282 KOG3967 Uncharacterized conser 96.6 0.025 5.4E-07 48.9 10.0 102 326-435 99-213 (297)
283 PLN02919 haloacid dehalogenase 96.6 0.93 2E-05 51.3 25.2 84 92-180 687-775 (1057)
284 KOG0973 Histone transcription 96.5 0.069 1.5E-06 56.9 14.6 161 85-271 67-252 (942)
285 KOG2919 Guanine nucleotide-bin 96.4 0.45 9.9E-06 44.1 17.3 19 5-23 53-71 (406)
286 KOG4497 Uncharacterized conser 96.4 0.099 2.2E-06 48.3 13.1 36 87-123 91-126 (447)
287 TIGR02171 Fb_sc_TIGR02171 Fibr 96.4 0.021 4.5E-07 60.6 10.0 57 60-124 330-388 (912)
288 PLN02209 serine carboxypeptida 96.4 0.019 4.2E-07 57.6 9.4 146 299-449 42-214 (437)
289 KOG0318 WD40 repeat stress pro 96.3 1.3 2.9E-05 43.8 24.2 184 60-283 40-231 (603)
290 COG5354 Uncharacterized protei 96.2 1.4 3E-05 43.6 20.5 227 60-320 109-349 (561)
291 PF05057 DUF676: Putative seri 96.2 0.0084 1.8E-07 54.3 5.5 21 411-431 77-97 (217)
292 PF04762 IKI3: IKI3 family; I 96.2 0.82 1.8E-05 50.8 21.4 107 88-207 210-324 (928)
293 TIGR02171 Fb_sc_TIGR02171 Fibr 96.1 0.066 1.4E-06 57.0 11.7 113 156-275 320-443 (912)
294 KOG1445 Tumor-specific antigen 96.1 0.022 4.9E-07 56.9 7.8 106 6-124 632-753 (1012)
295 KOG0282 mRNA splicing factor [ 96.0 0.076 1.7E-06 51.5 10.9 180 60-275 281-465 (503)
296 PF07433 DUF1513: Protein of u 96.0 1.1 2.4E-05 42.0 18.1 166 156-339 18-200 (305)
297 KOG0645 WD40 repeat protein [G 96.0 1.2 2.6E-05 40.3 21.2 147 87-256 61-213 (312)
298 KOG0305 Anaphase promoting com 95.9 1.2 2.6E-05 44.9 19.2 184 59-280 197-384 (484)
299 KOG0315 G-protein beta subunit 95.9 1.2 2.6E-05 39.9 18.4 107 157-279 181-295 (311)
300 COG4782 Uncharacterized protei 95.9 0.052 1.1E-06 51.4 9.0 108 328-449 116-236 (377)
301 KOG0641 WD40 repeat protein [G 95.8 1.2 2.6E-05 39.0 26.9 199 87-314 89-300 (350)
302 PLN02919 haloacid dehalogenase 95.8 4.8 0.0001 45.8 26.0 122 91-221 627-769 (1057)
303 KOG0273 Beta-transducin family 95.8 2.2 4.7E-05 41.8 19.8 181 55-271 335-522 (524)
304 PRK10252 entF enterobactin syn 95.7 0.029 6.4E-07 65.8 8.2 98 329-445 1069-1169(1296)
305 KOG1551 Uncharacterized conser 95.6 0.03 6.5E-07 50.1 6.1 129 411-548 194-365 (371)
306 KOG4388 Hormone-sensitive lipa 95.5 0.033 7.1E-07 55.5 6.5 89 328-431 396-488 (880)
307 COG1075 LipA Predicted acetylt 95.4 0.049 1.1E-06 52.9 7.5 100 327-446 59-163 (336)
308 KOG0263 Transcription initiati 95.4 1.2 2.5E-05 46.3 17.1 172 61-272 475-649 (707)
309 KOG3724 Negative regulator of 95.4 0.015 3.3E-07 60.0 3.9 47 393-440 156-209 (973)
310 KOG0272 U4/U6 small nuclear ri 95.4 0.31 6.7E-06 46.7 12.0 116 62-207 328-450 (459)
311 KOG0284 Polyadenylation factor 95.3 0.22 4.8E-06 47.5 11.0 99 157-275 195-297 (464)
312 KOG1274 WD40 repeat protein [G 95.3 0.52 1.1E-05 49.8 14.4 63 60-126 161-223 (933)
313 KOG1445 Tumor-specific antigen 95.1 0.12 2.6E-06 52.0 9.0 17 6-22 725-741 (1012)
314 PLN00181 protein SPA1-RELATED; 95.1 5.3 0.00011 44.3 23.1 52 60-124 599-651 (793)
315 KOG0771 Prolactin regulatory e 95.0 1.2 2.6E-05 42.8 14.7 148 88-258 187-344 (398)
316 KOG1446 Histone H3 (Lys4) meth 95.0 3.1 6.7E-05 38.6 22.2 218 60-316 37-261 (311)
317 COG5354 Uncharacterized protei 94.9 1.6 3.5E-05 43.1 15.8 181 59-272 152-348 (561)
318 KOG1539 WD repeat protein [Gen 94.7 0.16 3.5E-06 52.8 9.0 59 2-105 577-635 (910)
319 PF02450 LCAT: Lecithin:choles 94.7 0.1 2.2E-06 52.0 7.6 81 351-446 67-159 (389)
320 KOG0772 Uncharacterized conser 94.7 3.2 7E-05 41.2 17.1 195 60-275 190-397 (641)
321 PF11288 DUF3089: Protein of u 94.7 0.043 9.3E-07 48.4 4.3 85 362-447 45-137 (207)
322 TIGR03712 acc_sec_asp2 accesso 94.7 2.8 6.1E-05 41.8 16.9 114 307-449 274-392 (511)
323 cd00741 Lipase Lipase. Lipase 94.5 0.091 2E-06 44.6 5.8 38 395-434 13-50 (153)
324 KOG2521 Uncharacterized conser 94.5 1 2.2E-05 43.4 13.2 66 484-549 225-290 (350)
325 PF04762 IKI3: IKI3 family; I 94.4 5.7 0.00012 44.4 20.7 102 151-259 216-325 (928)
326 PF06850 PHB_depo_C: PHB de-po 94.4 0.067 1.5E-06 46.0 4.6 70 480-549 129-202 (202)
327 KOG2048 WD40 repeat protein [G 94.4 3.4 7.4E-05 42.4 16.9 114 90-221 431-547 (691)
328 PF04083 Abhydro_lipase: Parti 94.3 0.16 3.6E-06 35.2 5.5 44 297-340 11-55 (63)
329 COG2939 Carboxypeptidase C (ca 94.2 0.17 3.8E-06 50.2 7.6 115 311-431 87-217 (498)
330 KOG0305 Anaphase promoting com 94.2 6.6 0.00014 39.7 18.6 152 152-318 309-462 (484)
331 KOG4497 Uncharacterized conser 94.0 0.26 5.7E-06 45.6 7.9 62 4-109 94-155 (447)
332 KOG2315 Predicted translation 94.0 4.8 0.0001 40.5 16.9 96 166-275 250-347 (566)
333 PF01764 Lipase_3: Lipase (cla 94.0 0.12 2.5E-06 43.1 5.4 53 393-447 47-106 (140)
334 KOG2315 Predicted translation 93.8 7.3 0.00016 39.2 17.7 138 91-257 221-373 (566)
335 KOG2106 Uncharacterized conser 93.4 2.5 5.4E-05 41.8 13.6 40 58-105 470-509 (626)
336 KOG0643 Translation initiation 93.4 6.1 0.00013 36.0 19.9 196 87-306 10-209 (327)
337 COG4287 PqaA PhoPQ-activated p 93.3 0.15 3.2E-06 48.2 5.1 131 396-529 217-371 (507)
338 KOG4328 WD40 protein [Function 93.3 9 0.0002 37.6 19.4 160 87-271 234-398 (498)
339 PLN00181 protein SPA1-RELATED; 93.2 16 0.00035 40.5 25.5 180 60-274 556-740 (793)
340 KOG1524 WD40 repeat-containing 93.2 3.8 8.2E-05 41.0 14.5 34 84-122 142-175 (737)
341 KOG0771 Prolactin regulatory e 93.2 2.3 5.1E-05 40.9 12.9 52 5-99 190-241 (398)
342 KOG0265 U5 snRNP-specific prot 93.1 7.3 0.00016 36.1 17.9 165 59-257 69-235 (338)
343 PF02333 Phytase: Phytase; In 93.1 9.6 0.00021 37.4 18.0 151 59-224 78-239 (381)
344 COG3490 Uncharacterized protei 93.0 7.3 0.00016 35.9 15.8 160 157-336 82-260 (366)
345 KOG0286 G-protein beta subunit 92.9 7.6 0.00017 35.8 24.5 236 4-314 58-300 (343)
346 KOG1007 WD repeat protein TSSC 92.9 5.8 0.00012 36.5 14.2 67 3-108 125-193 (370)
347 KOG0296 Angio-associated migra 92.8 9 0.0002 36.5 18.9 119 61-207 88-210 (399)
348 KOG2048 WD40 repeat protein [G 92.8 11 0.00023 39.0 17.3 161 85-272 380-548 (691)
349 COG3204 Uncharacterized protei 92.3 9.4 0.0002 35.5 15.9 108 4-119 88-210 (316)
350 PF06977 SdiA-regulated: SdiA- 92.3 9.2 0.0002 35.2 20.4 70 4-120 24-93 (248)
351 KOG0639 Transducin-like enhanc 92.2 3.1 6.7E-05 41.2 12.5 90 166-268 613-702 (705)
352 cd00519 Lipase_3 Lipase (class 92.2 0.27 5.8E-06 45.1 5.4 52 394-447 112-168 (229)
353 PF02089 Palm_thioest: Palmito 92.1 1.3 2.8E-05 41.2 9.4 107 326-445 4-114 (279)
354 KOG0279 G protein beta subunit 92.0 9.8 0.00021 34.9 23.0 168 85-282 61-232 (315)
355 PLN02454 triacylglycerol lipas 91.8 0.29 6.2E-06 48.1 5.2 40 393-432 209-248 (414)
356 KOG2110 Uncharacterized conser 91.7 8.9 0.00019 36.6 14.4 138 60-221 107-249 (391)
357 KOG2394 WD40 protein DMR-N9 [G 91.6 3 6.6E-05 41.6 11.8 56 189-256 293-350 (636)
358 KOG2110 Uncharacterized conser 91.6 4 8.8E-05 38.8 12.0 95 59-174 153-249 (391)
359 COG4247 Phy 3-phytase (myo-ino 91.5 11 0.00023 34.3 16.6 64 59-131 77-144 (364)
360 KOG0303 Actin-binding protein 91.5 8.7 0.00019 37.0 14.1 54 60-126 155-208 (472)
361 PF03283 PAE: Pectinacetyleste 91.2 0.34 7.4E-06 47.4 5.1 103 393-495 137-259 (361)
362 TIGR02604 Piru_Ver_Nterm putat 91.0 17 0.00038 35.9 17.1 40 167-208 164-203 (367)
363 COG3391 Uncharacterized conser 90.8 19 0.0004 35.9 23.2 161 90-277 118-288 (381)
364 PLN02408 phospholipase A1 90.5 0.43 9.3E-06 46.2 5.0 39 394-432 182-220 (365)
365 PLN02571 triacylglycerol lipas 90.4 0.43 9.4E-06 46.9 4.9 39 394-432 208-246 (413)
366 PRK13614 lipoprotein LpqB; Pro 90.2 26 0.00057 36.7 19.3 161 89-274 344-520 (573)
367 KOG0295 WD40 repeat-containing 90.0 18 0.00039 34.5 15.6 162 86-281 192-373 (406)
368 PF09910 DUF2139: Uncharacteri 89.9 7.9 0.00017 36.0 12.1 109 56-179 75-185 (339)
369 PF05787 DUF839: Bacterial pro 89.4 16 0.00034 38.0 15.5 41 164-206 478-520 (524)
370 PF01083 Cutinase: Cutinase; 89.3 1.3 2.8E-05 38.7 6.6 75 362-444 39-119 (179)
371 PF07995 GSDH: Glucose / Sorbo 89.2 22 0.00048 34.6 15.9 127 85-220 46-212 (331)
372 PLN02517 phosphatidylcholine-s 89.2 1.2 2.6E-05 45.8 7.0 73 352-431 159-232 (642)
373 PLN02606 palmitoyl-protein thi 88.9 2.9 6.3E-05 39.3 8.9 33 412-444 95-129 (306)
374 PLN02324 triacylglycerol lipas 88.8 0.67 1.5E-05 45.5 4.9 38 394-431 197-234 (415)
375 PF06259 Abhydrolase_8: Alpha/ 88.8 1.3 2.9E-05 38.2 6.2 51 394-445 92-143 (177)
376 KOG0283 WD40 repeat-containing 88.8 15 0.00032 38.8 14.6 36 61-105 434-469 (712)
377 PF06977 SdiA-regulated: SdiA- 88.7 15 0.00032 33.9 13.3 195 88-308 22-233 (248)
378 KOG0288 WD40 repeat protein Ti 88.7 7.8 0.00017 37.5 11.5 106 87-206 341-450 (459)
379 PLN00413 triacylglycerol lipas 88.4 0.78 1.7E-05 45.7 5.1 35 395-431 269-303 (479)
380 KOG1920 IkappaB kinase complex 88.3 41 0.00089 37.7 17.8 40 61-109 92-131 (1265)
381 PLN02802 triacylglycerol lipas 88.2 0.75 1.6E-05 46.2 4.9 39 394-432 312-350 (509)
382 PF15492 Nbas_N: Neuroblastoma 88.2 21 0.00046 33.0 23.0 37 88-128 44-80 (282)
383 KOG2041 WD40 repeat protein [G 88.2 17 0.00036 38.1 14.1 44 162-208 236-279 (1189)
384 KOG1523 Actin-related protein 88.2 23 0.0005 33.3 17.7 76 5-124 14-89 (361)
385 PLN02633 palmitoyl protein thi 88.0 3.2 6.9E-05 39.1 8.5 34 412-445 94-129 (314)
386 smart00824 PKS_TE Thioesterase 87.6 2.7 5.8E-05 37.3 8.0 77 355-444 19-99 (212)
387 KOG0278 Serine/threonine kinas 87.1 18 0.00038 32.8 12.0 128 61-221 167-298 (334)
388 KOG0283 WD40 repeat-containing 87.1 12 0.00027 39.4 12.9 92 151-255 376-468 (712)
389 PLN02162 triacylglycerol lipas 86.6 1.1 2.5E-05 44.5 5.0 36 394-431 262-297 (475)
390 PLN02753 triacylglycerol lipas 86.2 1.1 2.4E-05 45.2 4.9 39 393-431 290-331 (531)
391 KOG2106 Uncharacterized conser 86.2 13 0.00029 37.1 11.7 91 59-171 428-518 (626)
392 KOG2369 Lecithin:cholesterol a 86.0 2 4.4E-05 42.6 6.4 74 351-435 126-205 (473)
393 PLN02761 lipase class 3 family 86.0 1.2 2.6E-05 45.0 4.9 39 393-431 271-313 (527)
394 KOG0288 WD40 repeat protein Ti 85.7 8.5 0.00018 37.3 10.0 64 60-131 364-427 (459)
395 PLN02934 triacylglycerol lipas 85.7 1.2 2.6E-05 44.8 4.8 36 394-431 305-340 (515)
396 KOG0290 Conserved WD40 repeat- 84.8 33 0.00072 31.8 14.6 142 57-211 73-220 (364)
397 KOG0643 Translation initiation 84.7 32 0.0007 31.5 20.2 163 60-256 75-249 (327)
398 KOG0310 Conserved WD40 repeat- 84.6 28 0.00061 34.6 13.1 178 59-275 48-228 (487)
399 KOG1063 RNA polymerase II elon 84.5 11 0.00024 39.1 10.8 49 59-118 552-601 (764)
400 PRK13613 lipoprotein LpqB; Pro 83.7 64 0.0014 34.2 18.7 167 89-275 364-541 (599)
401 PLN02310 triacylglycerol lipas 83.5 1.4 3.1E-05 43.3 4.1 37 395-431 190-228 (405)
402 COG4257 Vgb Streptogramin lyas 83.5 38 0.00082 31.4 13.9 97 93-208 67-167 (353)
403 PRK02888 nitrous-oxide reducta 83.4 43 0.00093 35.2 14.6 38 235-275 317-354 (635)
404 KOG0268 Sof1-like rRNA process 83.1 20 0.00044 34.2 11.1 150 89-270 189-345 (433)
405 PLN03037 lipase class 3 family 83.0 1.5 3.2E-05 44.4 4.0 37 395-431 299-337 (525)
406 PLN02719 triacylglycerol lipas 82.6 2 4.4E-05 43.3 4.8 38 394-431 277-317 (518)
407 PF15525 DUF4652: Domain of un 82.5 31 0.00068 29.8 11.1 68 58-130 87-157 (200)
408 KOG1063 RNA polymerase II elon 82.1 9.7 0.00021 39.5 9.3 18 5-22 576-593 (764)
409 KOG0286 G-protein beta subunit 82.1 44 0.00095 31.1 20.4 232 3-281 67-312 (343)
410 KOG0650 WD40 repeat nucleolar 82.0 66 0.0014 33.2 17.5 50 60-123 423-474 (733)
411 KOG0647 mRNA export protein (c 81.1 10 0.00023 35.2 8.3 44 87-134 72-115 (347)
412 KOG2541 Palmitoyl protein thio 81.1 19 0.00042 33.1 9.9 88 328-432 24-112 (296)
413 PRK13613 lipoprotein LpqB; Pro 81.0 80 0.0017 33.5 17.2 121 89-226 410-541 (599)
414 COG3204 Uncharacterized protei 80.9 49 0.0011 31.0 12.6 115 89-221 87-211 (316)
415 KOG4378 Nuclear protein COP1 [ 80.7 66 0.0014 32.3 14.5 191 48-274 92-282 (673)
416 KOG1230 Protein containing rep 80.5 62 0.0013 31.9 15.6 185 59-256 98-314 (521)
417 PF03088 Str_synth: Strictosid 80.5 8.1 0.00018 29.0 6.3 53 57-121 35-87 (89)
418 PLN02213 sinapoylglucose-malat 80.4 2.6 5.7E-05 40.7 4.8 62 485-548 234-316 (319)
419 PF09994 DUF2235: Uncharacteri 80.1 9.2 0.0002 36.1 8.2 45 387-432 68-112 (277)
420 KOG0307 Vesicle coat complex C 80.0 11 0.00024 41.3 9.4 99 165-274 137-242 (1049)
421 KOG1283 Serine carboxypeptidas 79.0 5.9 0.00013 37.2 6.1 133 306-446 11-165 (414)
422 COG3391 Uncharacterized conser 78.5 74 0.0016 31.6 18.1 138 60-221 141-282 (381)
423 PF04053 Coatomer_WDAD: Coatom 78.2 37 0.0008 34.5 12.2 38 60-108 127-165 (443)
424 KOG0319 WD40-repeat-containing 78.1 98 0.0021 32.8 18.5 240 5-317 196-442 (775)
425 KOG1539 WD repeat protein [Gen 76.8 10 0.00022 40.3 7.7 61 189-260 579-639 (910)
426 KOG2919 Guanine nucleotide-bin 76.3 64 0.0014 30.6 11.9 33 88-122 50-82 (406)
427 PF13449 Phytase-like: Esteras 75.7 80 0.0017 30.6 17.5 106 167-274 112-253 (326)
428 PRK13614 lipoprotein LpqB; Pro 75.4 1.1E+02 0.0025 32.1 17.6 65 154-221 445-517 (573)
429 TIGR02604 Piru_Ver_Nterm putat 75.2 71 0.0015 31.6 13.3 53 194-253 130-198 (367)
430 KOG1408 WD40 repeat protein [F 75.2 1.2E+02 0.0026 32.3 14.5 218 4-260 462-705 (1080)
431 KOG0282 mRNA splicing factor [ 75.2 28 0.0006 34.6 9.7 141 87-256 258-403 (503)
432 PF12566 DUF3748: Protein of u 75.0 2.8 6E-05 32.5 2.5 17 6-22 72-88 (122)
433 PLN02847 triacylglycerol lipas 74.6 8.1 0.00018 39.9 6.3 21 412-432 251-271 (633)
434 PF11768 DUF3312: Protein of u 74.5 25 0.00054 36.0 9.6 51 60-124 282-332 (545)
435 KOG4569 Predicted lipase [Lipi 74.0 4.9 0.00011 39.1 4.6 54 394-449 155-215 (336)
436 KOG0289 mRNA splicing factor [ 73.4 1E+02 0.0022 30.6 18.2 68 194-275 354-422 (506)
437 PF08237 PE-PPE: PE-PPE domain 73.3 15 0.00033 33.3 7.3 36 410-445 46-88 (225)
438 PF05096 Glu_cyclase_2: Glutam 72.5 82 0.0018 29.2 20.0 176 57-271 66-260 (264)
439 PF13360 PQQ_2: PQQ-like domai 72.5 75 0.0016 28.7 12.9 141 60-221 87-229 (238)
440 PF13449 Phytase-like: Esteras 72.3 48 0.001 32.2 11.1 65 59-123 184-253 (326)
441 COG3673 Uncharacterized conser 71.5 23 0.00049 33.5 7.8 70 361-431 63-141 (423)
442 PRK02888 nitrous-oxide reducta 71.4 1.4E+02 0.0031 31.5 21.6 123 57-209 213-342 (635)
443 KOG0640 mRNA cleavage stimulat 71.0 94 0.002 29.3 15.0 70 195-281 269-344 (430)
444 KOG4499 Ca2+-binding protein R 70.9 82 0.0018 28.5 13.6 79 91-178 161-244 (310)
445 KOG1273 WD40 repeat protein [G 69.4 37 0.0008 31.9 8.7 18 5-22 69-86 (405)
446 KOG0639 Transducin-like enhanc 69.3 47 0.001 33.4 9.8 161 84-275 462-625 (705)
447 KOG0306 WD40-repeat-containing 69.1 1.7E+02 0.0036 31.4 21.8 174 60-271 395-581 (888)
448 PF09910 DUF2139: Uncharacteri 69.0 1E+02 0.0022 29.0 12.5 103 163-276 74-185 (339)
449 KOG0277 Peroxisomal targeting 68.8 95 0.0021 28.5 18.3 241 92-371 13-265 (311)
450 PF13360 PQQ_2: PQQ-like domai 67.0 98 0.0021 27.9 15.5 131 60-221 4-139 (238)
451 KOG1520 Predicted alkaloid syn 67.0 1.2E+02 0.0026 29.6 12.0 86 167-260 199-286 (376)
452 PF15492 Nbas_N: Neuroblastoma 66.9 9.2 0.0002 35.3 4.4 31 238-272 229-259 (282)
453 KOG0277 Peroxisomal targeting 66.6 1.1E+02 0.0023 28.2 16.1 179 59-272 38-221 (311)
454 KOG1009 Chromatin assembly com 66.3 1.4E+02 0.003 29.3 14.3 115 84-208 62-186 (434)
455 KOG0278 Serine/threonine kinas 66.0 1.1E+02 0.0023 28.0 14.6 136 85-253 141-282 (334)
456 KOG0290 Conserved WD40 repeat- 65.9 1.2E+02 0.0026 28.5 16.0 42 87-128 44-90 (364)
457 COG4553 DepA Poly-beta-hydroxy 65.2 7.8 0.00017 35.9 3.6 65 485-549 340-407 (415)
458 KOG1009 Chromatin assembly com 64.9 5.9 0.00013 38.2 2.9 55 7-105 129-183 (434)
459 PF03022 MRJP: Major royal jel 64.9 1.3E+02 0.0028 28.6 14.4 67 59-130 34-105 (287)
460 KOG0284 Polyadenylation factor 64.6 41 0.0009 32.8 8.3 153 88-276 97-256 (464)
461 PLN02213 sinapoylglucose-malat 64.6 16 0.00035 35.3 6.0 84 364-449 3-98 (319)
462 KOG0646 WD40 repeat protein [G 64.1 1.5E+02 0.0032 29.7 12.0 217 5-281 85-316 (476)
463 KOG1538 Uncharacterized conser 63.1 21 0.00046 37.0 6.5 37 60-104 34-70 (1081)
464 COG1770 PtrB Protease II [Amin 62.2 2.2E+02 0.0047 30.3 25.4 146 89-256 130-286 (682)
465 KOG1520 Predicted alkaloid syn 61.8 1.4E+02 0.0031 29.2 11.4 103 165-268 134-248 (376)
466 PF11768 DUF3312: Protein of u 61.8 2E+02 0.0044 29.7 16.1 68 50-126 227-294 (545)
467 KOG0306 WD40-repeat-containing 61.8 2.3E+02 0.005 30.4 17.2 147 89-259 375-529 (888)
468 KOG4640 Anaphase-promoting com 61.5 30 0.00065 35.8 7.2 30 91-124 66-95 (665)
469 KOG0289 mRNA splicing factor [ 61.4 1.8E+02 0.0038 29.0 19.8 103 152-271 355-461 (506)
470 KOG4283 Transcription-coupled 60.9 1.5E+02 0.0032 27.9 15.9 58 60-129 125-184 (397)
471 KOG2395 Protein involved in va 60.4 57 0.0012 33.2 8.7 131 59-207 356-491 (644)
472 PTZ00472 serine carboxypeptida 59.6 17 0.00038 37.1 5.4 62 485-547 365-457 (462)
473 PF10605 3HBOH: 3HB-oligomer h 59.5 8.1 0.00018 39.7 2.9 48 481-528 551-603 (690)
474 KOG0264 Nucleosome remodeling 58.1 1.7E+02 0.0036 29.0 11.2 57 60-124 296-352 (422)
475 PF08553 VID27: VID27 cytoplas 58.0 1.2E+02 0.0026 33.2 11.4 125 59-207 504-638 (794)
476 COG3490 Uncharacterized protei 57.2 48 0.001 30.9 7.0 56 60-121 92-148 (366)
477 PRK13615 lipoprotein LpqB; Pro 56.8 1.2E+02 0.0026 31.8 10.8 35 89-124 471-505 (557)
478 KOG0275 Conserved WD40 repeat- 56.6 1.5E+02 0.0032 28.1 10.1 111 5-126 352-472 (508)
479 TIGR03300 assembly_YfgL outer 56.5 2.1E+02 0.0045 28.2 18.6 105 156-280 242-346 (377)
480 KOG4540 Putative lipase essent 56.3 17 0.00037 33.5 4.1 22 412-433 276-297 (425)
481 COG5153 CVT17 Putative lipase 56.3 17 0.00037 33.5 4.1 22 412-433 276-297 (425)
482 PF12894 Apc4_WD40: Anaphase-p 55.8 39 0.00085 21.8 4.7 28 89-120 13-40 (47)
483 PLN03016 sinapoylglucose-malat 55.6 30 0.00064 35.1 6.3 144 300-449 41-212 (433)
484 PLN02209 serine carboxypeptida 55.4 32 0.00069 34.9 6.4 62 485-548 352-434 (437)
485 PF04301 DUF452: Protein of un 55.2 22 0.00048 31.8 4.7 32 412-445 57-88 (213)
486 PF10584 Proteasome_A_N: Prote 55.2 4.7 0.0001 21.5 0.3 8 8-15 7-14 (23)
487 PF05694 SBP56: 56kDa selenium 54.9 2.4E+02 0.0052 28.4 13.5 19 59-77 222-241 (461)
488 COG4257 Vgb Streptogramin lyas 53.7 1.9E+02 0.0042 27.0 15.6 134 58-221 82-217 (353)
489 KOG2111 Uncharacterized conser 52.5 1.3E+02 0.0029 28.5 9.1 75 5-124 185-259 (346)
490 PF03088 Str_synth: Strictosid 52.5 53 0.0011 24.7 5.6 51 166-221 36-86 (89)
491 KOG0268 Sof1-like rRNA process 51.0 22 0.00047 34.0 4.0 53 60-121 295-347 (433)
492 PF01731 Arylesterase: Arylest 49.6 64 0.0014 24.1 5.6 49 166-219 35-83 (86)
493 KOG0296 Angio-associated migra 49.6 2.6E+02 0.0055 27.2 19.6 162 88-281 65-229 (399)
494 TIGR03606 non_repeat_PQQ dehyd 48.8 3.1E+02 0.0068 28.0 17.2 33 92-128 34-66 (454)
495 PRK13615 lipoprotein LpqB; Pro 48.4 3.5E+02 0.0076 28.5 18.8 159 90-272 336-502 (557)
496 PF02333 Phytase: Phytase; In 47.3 3E+02 0.0065 27.3 16.1 64 156-221 69-136 (381)
497 KOG1963 WD40 repeat protein [G 47.2 87 0.0019 33.7 8.1 51 59-122 273-323 (792)
498 KOG0264 Nucleosome remodeling 46.7 3.1E+02 0.0067 27.3 18.3 148 188-349 229-383 (422)
499 PF05787 DUF839: Bacterial pro 46.6 1.2E+02 0.0025 31.7 9.0 39 61-106 482-520 (524)
500 PF06441 EHN: Epoxide hydrolas 45.7 49 0.0011 26.2 4.8 39 296-340 66-104 (112)
No 1
>KOG2281 consensus Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.6e-69 Score=515.60 Aligned_cols=538 Identities=41% Similarity=0.652 Sum_probs=450.1
Q ss_pred CCccceEEEcCCC----CeEEEEEEeCCCCCeEEEeecCCCCCCCCCcccccCCCCCCCCCeEEEEEEECCC---CceEE
Q 008873 1 MDRKTGYWWSLDS----KFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAG---GPVSW 73 (550)
Q Consensus 1 ~~~~~~~~wSPdg----~~lay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~---~~~~~ 73 (550)
|+|+.++||||-+ .+|+|.-.|++.++.+..+... ...++...++||++|+.|+++.|.++.+.+ |+...
T Consensus 264 fdR~~GyWW~p~s~~~~~rIlYeeVdesev~V~h~~s~~---~~~~~~d~~rYPrtGt~Nak~~Lkmv~~~~~~~gk~~~ 340 (867)
T KOG2281|consen 264 FDRFEGYWWSPPSGLKILRILYEEVDESEVEVIHVPSPV---LGDRRVDSYRYPRTGTKNAKSTLKMVEFENDAEGKIYD 340 (867)
T ss_pred HHhhcceeecCCCCCceEEEEeeecChhheEEEeccCcc---cCCCccccccCCcCCCCCceeeEEEEEEeeccccceec
Confidence 7899999999743 4788888888777555554432 234788899999999999999999988887 55443
Q ss_pred EEc---ccCCCCCCCCCceeEEEEECCCCe-EEEEEEecCCCceEEEEEECCCCce---------------------EEE
Q 008873 74 MDL---QCGGTDQNYDEEYLARVNWMHGNI-LTAQVLNRSQTKLKVLKFDIKTGQR---------------------KVI 128 (550)
Q Consensus 74 l~~---~~~~~~~~~~~~~~~~~~wspDg~-~i~~~~~r~~~~~~l~~~~~~~g~~---------------------~~l 128 (550)
+.+ ..+..-+..+-.|+..+-|.|||+ .++.+++|.|.+.+|.+++.+.... ..+
T Consensus 341 v~~kdlv~~~~~~f~~~EYI~Ragwtpdgkyvwvq~LdR~Q~~l~iilip~~~f~~~~dn~~~~~~~~~~v~~~~~~~vi 420 (867)
T KOG2281|consen 341 VPLKDLVQPFHCLFEDVEYIARAGWTPDGKYVWVQVLDRSQQRLQIILIPPTLFIPKEDNLQLRTDLNMGVPDDVSPEVI 420 (867)
T ss_pred cchhhcccccccccccceeeeeccccCCCcEEEEEEecCCcceeEEEEECHHHcCCccccHhhhhhhhhcCCcCCCcceE
Confidence 332 111112344447999999999999 6778899999999999999886544 566
Q ss_pred EEeecCceeeccCccccCCCCCccCCCcEEEEEccCCccEEEEEeCCC----------------------ceeecccccC
Q 008873 129 LVEELDSWVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDING----------------------TCLGPITEGD 186 (550)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~~----------------------~~~~~lT~~~ 186 (550)
.++..+.|++.+..|.+.+-......-.|++.++..||.|||.+.... ++...||+|+
T Consensus 421 yee~sd~winiHd~f~~~~~~~~e~~~~fi~asE~~~Frhly~its~lk~ng~~~s~~~~p~~~d~~c~i~ee~altSge 500 (867)
T KOG2281|consen 421 YEEPSDGWINIHDIFHPLPQSTHEASYPFIWASEETGFRHLYLITSLLKPNGYCLSLGSAPLDQDFKCRIKEEIALTSGE 500 (867)
T ss_pred EecCCCceEEhhhcccccccCCccceeeEEEecccccceEEEEEEeecccCCCcccccCCcccccccCcchhheeecccc
Confidence 777788999999999888644322222389999999999999987422 2356789999
Q ss_pred eEEEEEE--eEeecCCEEEEEEcCCCCceeEEEEEEeCCCCCCCCCCCeeeCCCCceEEEEECCCCCEEEEeecCCCCCC
Q 008873 187 WMVEQIV--GVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTNGKGKHVAVLDHNMRNFVDFHDSLDSPP 264 (550)
Q Consensus 187 ~~~~~~~--~~s~dg~~l~f~~~~~~~~~~~l~~v~~~~~g~~~~~~~~~lt~~~~~~~~~~s~dg~~l~~~~s~~~~p~ 264 (550)
|+|.... +++.-.+.+||.++.++|.+.+||++...+.| +..+||...-.+.+.++-+++.++..+++...||
T Consensus 501 weVl~r~Gi~VdE~~~LVYf~gt~d~PlE~hLyvvsye~~g-----~~~rlt~~g~sh~~~l~~~~d~fv~~~~sv~sP~ 575 (867)
T KOG2281|consen 501 WEVLARHGIWVDEVRKLVYFVGTKDTPLEHHLYVVSYENPG-----EIARLTEPGYSHSCELDQQCDHFVSYYSSVGSPP 575 (867)
T ss_pred eeehhhcCeeecccceEEEEEccCCCCceeeEEEEEEecCC-----ceeeccCCCcccchhhhhhhhhHhhhhhcCCCCc
Confidence 9986543 36777889999999999999999999985344 6789998766788889999999888889999999
Q ss_pred EEEEEEcCCCceeEeccCCCCChhhhh-----cCCCCCCeEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCC
Q 008873 265 RILLCSLQDGSLVLPLYEQPLTVPRIK-----RLQLEPPDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPC 339 (550)
Q Consensus 265 ~l~~~~~~~g~~~~~l~~~~~~~~~~~-----~~~~~~~~~~~~~~~~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~ 339 (550)
.+.++.+..++..... ........+. ...+..+|-+.|.+..|..+.+.+|+|.+.+++ +|||++++++|||+
T Consensus 576 cv~~y~ls~~~~~~l~-~q~~~~~~l~~~~~~~Pdy~p~eif~fqs~tg~~lYgmiyKPhn~~pg-kkYptvl~VYGGP~ 653 (867)
T KOG2281|consen 576 CVSLYSLSWPENDPLP-KQVSFWAILVSGAPPPPDYVPPEIFSFQSKTGLTLYGMIYKPHNFQPG-KKYPTVLNVYGGPG 653 (867)
T ss_pred eEEEEeccCCccCccc-chhhHHHHHHhcCCCCCccCChhheeeecCCCcEEEEEEEccccCCCC-CCCceEEEEcCCCc
Confidence 9999988776642221 2111222222 233444577888998899999999999998665 68999999999999
Q ss_pred ceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCchhhHHHHhhccCCCchHHHHHHHHHHHHc-CCCCCCceEEEE
Q 008873 340 VQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQ-GLAKVGHIGLYG 418 (550)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~-~~~d~~~i~i~G 418 (550)
.|.+.+.|...-......|+++||.|+.+|.||+-..|..|+..+...+|+.+++|+++++++|+++ +++|.+||+|.|
T Consensus 654 VQlVnnsfkgi~ylR~~~LaslGy~Vv~IDnRGS~hRGlkFE~~ik~kmGqVE~eDQVeglq~Laeq~gfidmdrV~vhG 733 (867)
T KOG2281|consen 654 VQLVNNSFKGIQYLRFCRLASLGYVVVFIDNRGSAHRGLKFESHIKKKMGQVEVEDQVEGLQMLAEQTGFIDMDRVGVHG 733 (867)
T ss_pred eEEeeccccceehhhhhhhhhcceEEEEEcCCCccccchhhHHHHhhccCeeeehhhHHHHHHHHHhcCcccchheeEec
Confidence 9999999976555567889999999999999999999999999999999999999999999999998 589999999999
Q ss_pred echhHHHHHHHHhhCCCeeEEEEEcCCcCCcccccchhhhhccCCCCCCccccccCChhhhhhcCC---CcEEEEecCCC
Q 008873 419 WSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTFYTEKYMGLPSEDPVGYEYSSVMHHVHKMK---GKLLLVHGMID 495 (550)
Q Consensus 419 ~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~---~P~lii~G~~D 495 (550)
||||||+++++++++|++|+++|+++|+++|..|++.|+|+|||.|..+...|.+.|...++.++. ..+|++||.-|
T Consensus 734 WSYGGYLSlm~L~~~P~IfrvAIAGapVT~W~~YDTgYTERYMg~P~~nE~gY~agSV~~~VeklpdepnRLlLvHGliD 813 (867)
T KOG2281|consen 734 WSYGGYLSLMGLAQYPNIFRVAIAGAPVTDWRLYDTGYTERYMGYPDNNEHGYGAGSVAGHVEKLPDEPNRLLLVHGLID 813 (867)
T ss_pred cccccHHHHHHhhcCcceeeEEeccCcceeeeeecccchhhhcCCCccchhcccchhHHHHHhhCCCCCceEEEEecccc
Confidence 999999999999999999999999999999999999999999999999999999999999999985 46999999999
Q ss_pred CCCChHHHHHHHHHHHHcCCCeEEEEcCCCCCcCCCCCcHHHHHHHHHHHHHH
Q 008873 496 ENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIER 548 (550)
Q Consensus 496 ~~v~~~~~~~~~~~l~~~~~~~~~~~~p~~~H~~~~~~~~~~~~~~~~~fl~~ 548 (550)
++|++.+...+..+|.++|++.++++||++.|++..++..+.+..+++.|+++
T Consensus 814 ENVHF~Hts~Lvs~lvkagKpyeL~IfP~ERHsiR~~es~~~yE~rll~FlQ~ 866 (867)
T KOG2281|consen 814 ENVHFAHTSRLVSALVKAGKPYELQIFPNERHSIRNPESGIYYEARLLHFLQE 866 (867)
T ss_pred cchhhhhHHHHHHHHHhCCCceEEEEccccccccCCCccchhHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999986
No 2
>KOG2100 consensus Dipeptidyl aminopeptidase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.6e-56 Score=467.54 Aligned_cols=530 Identities=28% Similarity=0.455 Sum_probs=438.1
Q ss_pred CccceEEEcCCCCeEEEEEEeCCCCCeEEEeecCCCCCCCCCcccccCCCCCCCCCeEEEEEEECCCCceEEEEcccCCC
Q 008873 2 DRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQCGGT 81 (550)
Q Consensus 2 ~~~~~~~wSPdg~~lay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~ 81 (550)
....++||||||.++||...++++++.+.++.+.+.. ..+....++||++|.+||.+.|+++|+.......+.. +.
T Consensus 207 ~~~~a~wwsp~g~~la~~~~~dt~V~~~~~~~~~~~~-~yp~~~~~~ypk~g~~np~v~l~v~~~~~~~~~~~~~---~~ 282 (755)
T KOG2100|consen 207 SSDSAIWWSPDGDRLAYASFNDTKVETINLPGYTDDD-QYPKSTNFHYPKAGAPNPAVSLFVVDLHDPPRLGIPP---PT 282 (755)
T ss_pred ccCccceeCCCCceeEEEEecccccceEEeccccccc-cCcccceeecCCCCCCCCeEEEEEEeCCCceeeccCC---cc
Confidence 3567899999999999999999999999999987762 2256678899999999999999999966543322100 11
Q ss_pred CCCCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecC-ceeeccCccccCCCCCccCCCc-EEE
Q 008873 82 DQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELD-SWVNLHDCFTPLDKGVTKYSGG-FIW 159 (550)
Q Consensus 82 ~~~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~ 159 (550)
.....+.++....|.-+.++++.+.+|.++...+-+|+.. +.++.......+ +|+..... .+.. .++... +.+
T Consensus 283 ~~~~~~~~~~~~~W~~~~~~~~~~~~r~~~~~~~~~cd~~-~~~~~~~~~~~~~~W~~~~~~-~~~~---~~d~~~~~~~ 357 (755)
T KOG2100|consen 283 NQRSGEYYVTNVKWDTTEKVLVVWTNREQNISVETLCDTP-GICRVVYEESSDGGWVEHQNV-EPVF---SSDGSSYLKV 357 (755)
T ss_pred ccccCceEEEEEEEecCccEEEEEEccCCCeeeeEEecCc-ccceeeEeccccccccccccc-cceE---eecCCceeEE
Confidence 2244577899999999999999999999988888899888 777666665555 48865431 1110 122222 444
Q ss_pred EEccCC-ccEEEEEeCCCc-eeecccccCeEEEEEEeEeecCCEEEEEEcCCCCceeEEEEEEeCCCCCCCCCCCeeeCC
Q 008873 160 ASEKTG-FRHLYLHDINGT-CLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTN 237 (550)
Q Consensus 160 ~s~~~g-~~~l~~~~~~~~-~~~~lT~~~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~~v~~~~~g~~~~~~~~~lt~ 237 (550)
.+...+ +.|+..+...++ ..+.||.|+|.+..+..++.+.+.++|.+...++..++||++++ ... ....+++
T Consensus 358 ~~~~~~~~~hi~~~~~~~~~~~~~lt~g~w~v~~i~~~~~~~~~i~f~~~~~~~~~~~ly~i~~--~~~----~~~~lt~ 431 (755)
T KOG2100|consen 358 DSVSDGGYNHIAYLKLSNGSEPRMLTSGNWEVTSILGYDKDSNRIYFDAYEEDPSERHLYSISL--GSG----TVESLTC 431 (755)
T ss_pred EeeccCCEEEEEEEEcCCCCccccccccceEEEEeccccCCCceEEEEecCCCCCceEEEEEEc--ccc----ccccccc
Confidence 555555 899988887666 78899999999988888888999999999998888999999998 322 2334555
Q ss_pred CC-----ceEEEEECCCCCEEEEeecCCCCCC-EEEEEEcCCCceeEeccCCCCChhhhhcCCCCCCeEEEEEcCCCcEE
Q 008873 238 GK-----GKHVAVLDHNMRNFVDFHDSLDSPP-RILLCSLQDGSLVLPLYEQPLTVPRIKRLQLEPPDIVQIQANDGTVL 311 (550)
Q Consensus 238 ~~-----~~~~~~~s~dg~~l~~~~s~~~~p~-~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l 311 (550)
.. ...++++++..++++..++.+..|. .+-+.....-+....|+.+......+....++..+...+.. +|...
T Consensus 432 ~~~~~~~~~~~~~~~~~~~~~v~~~~gP~~p~~~~~~~~~~~~~~~~~Le~n~~~~~~~~~~~~p~~~~~~i~~-~~~~~ 510 (755)
T KOG2100|consen 432 SLITGPCTYLSVSFSKSAKYYVLSCSGPKVPDGQLTRHSSKNSKTIVVLETNEELKKTIENVALPIVEFGKIEI-DGITA 510 (755)
T ss_pred cCCCCcceEEEEecCCcccEEEEEccCCCCCcceeeccccccceEEEEeccChhhHHHhhcccCCcceeEEEEe-ccEEE
Confidence 42 2456678888899998888876663 33333333333356788877777777778888888777777 88999
Q ss_pred EEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCchhhHHHHhhccCCC
Q 008873 312 YGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRI 391 (550)
Q Consensus 312 ~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~~~~~~~~~~~~~~ 391 (550)
.+.++.|++.... +|+|+||.+||||+++.+...|...|. ...+...|++|+.+|+||+|++|.++..++.+++|..
T Consensus 511 ~~~~~lP~~~~~~-~kyPllv~~yGGP~sq~v~~~~~~~~~--~~~~s~~g~~v~~vd~RGs~~~G~~~~~~~~~~lG~~ 587 (755)
T KOG2100|consen 511 NAILILPPNFDPS-KKYPLLVVVYGGPGSQSVTSKFSVDWN--EVVVSSRGFAVLQVDGRGSGGYGWDFRSALPRNLGDV 587 (755)
T ss_pred EEEEecCCCCCCC-CCCCEEEEecCCCCcceeeeeEEecHH--HHhhccCCeEEEEEcCCCcCCcchhHHHHhhhhcCCc
Confidence 9999999987544 699999999999999988888877664 3456789999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhCC-CeeEEEEEcCCcCCcccccchhhhhccCCCCCCccc
Q 008873 392 DAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFP-DVFQCAVSGAPVTSWDGYDTFYTEKYMGLPSEDPVG 470 (550)
Q Consensus 392 ~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 470 (550)
+++|++.+++++.+.+++|.+||+|+|||+|||++++++...+ +.|+|+++++|++||..++..++++++|.|.++...
T Consensus 588 ev~D~~~~~~~~~~~~~iD~~ri~i~GwSyGGy~t~~~l~~~~~~~fkcgvavaPVtd~~~yds~~terymg~p~~~~~~ 667 (755)
T KOG2100|consen 588 EVKDQIEAVKKVLKLPFIDRSRVAIWGWSYGGYLTLKLLESDPGDVFKCGVAVAPVTDWLYYDSTYTERYMGLPSENDKG 667 (755)
T ss_pred chHHHHHHHHHHHhcccccHHHeEEeccChHHHHHHHHhhhCcCceEEEEEEecceeeeeeecccccHhhcCCCccccch
Confidence 9999999999999999999999999999999999999999887 899999999999999999999999999999999888
Q ss_pred cccCChhhhhhcCCCcE-EEEecCCCCCCChHHHHHHHHHHHHcCCCeEEEEcCCCCCcCCCCCcHHHHHHHHHHHHHHh
Q 008873 471 YEYSSVMHHVHKMKGKL-LLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIERT 549 (550)
Q Consensus 471 ~~~~~~~~~~~~i~~P~-lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p~~~H~~~~~~~~~~~~~~~~~fl~~~ 549 (550)
|.+.++..++..++.|. |++||+.|++||++++.+++++|+.+|+++++++||+++|++...+...+++..+..||..+
T Consensus 668 y~e~~~~~~~~~~~~~~~LliHGt~DdnVh~q~s~~~~~aL~~~gv~~~~~vypde~H~is~~~~~~~~~~~~~~~~~~~ 747 (755)
T KOG2100|consen 668 YEESSVSSPANNIKTPKLLLIHGTEDDNVHFQQSAILIKALQNAGVPFRLLVYPDENHGISYVEVISHLYEKLDRFLRDC 747 (755)
T ss_pred hhhccccchhhhhccCCEEEEEcCCcCCcCHHHHHHHHHHHHHCCCceEEEEeCCCCcccccccchHHHHHHHHHHHHHH
Confidence 99999999999999777 99999999999999999999999999999999999999999998888899999999999865
Q ss_pred C
Q 008873 550 L 550 (550)
Q Consensus 550 l 550 (550)
+
T Consensus 748 ~ 748 (755)
T KOG2100|consen 748 F 748 (755)
T ss_pred c
Confidence 3
No 3
>COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]
Probab=100.00 E-value=1e-48 Score=407.32 Aligned_cols=496 Identities=24% Similarity=0.299 Sum_probs=344.7
Q ss_pred ceEEEcCCCCeEEEEEEeCCCCCeEEEeecCCCCCCCCCcccccCCCCCCCCCeEEEEEEECCCCceEEEEcccCCCCCC
Q 008873 5 TGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQN 84 (550)
Q Consensus 5 ~~~~wSPdg~~lay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~ 84 (550)
....|||+|+++++.........+ +.+ ......+.+-..+.......++++|.++ +...+ .
T Consensus 104 ~~~~~~~~g~~~~~~~~~~~~~~~------~~~---~~~~~~~~~~~~~~g~~~~~l~~~d~~~-~~~~~---------~ 164 (620)
T COG1506 104 SDARWSPDGDRIAFLTAEGASKRD------GGD---HLFVDRLPVWFDGRGGERSDLYVVDIES-KLIKL---------G 164 (620)
T ss_pred ccceeCCCCCeEEEEecccccccC------Cce---eeeecccceeecCCCCcccceEEEccCc-ccccc---------c
Confidence 456799999999994322211000 000 0111122222223223457789999987 33222 2
Q ss_pred CCCceeEEEEECCCCeEEEEEEecCC--C-ceEEEEEECCCCceEEEEEeecCceeeccCccccCCCCCccCCCcEEEEE
Q 008873 85 YDEEYLARVNWMHGNILTAQVLNRSQ--T-KLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYSGGFIWAS 161 (550)
Q Consensus 85 ~~~~~~~~~~wspDg~~i~~~~~r~~--~-~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 161 (550)
.....+..+.|.+|++.++....... . ....+.....+++...++..... . . .+.+. .++..+.+..
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~--~~~~~-----~~gk~~~~~~ 234 (620)
T COG1506 165 LGNLDVVSFATDGDGRLVASIRLDDDADPWVTNLYVLIEGNGELESLTPGEGS--I-S--KLAFD-----ADGKSIALLG 234 (620)
T ss_pred CCCCceeeeeeCCCCceeEEeeeccccCCceEeeEEEecCCCceEEEcCCCce--e-e--eeeeC-----CCCCeeEEec
Confidence 22344556677777776665544332 1 22333333356666665543211 1 0 01110 1222244443
Q ss_pred ccC--Cc---cEEEEEeCCCceeec-ccccC--eEEEEEEeEeecCCEEEEEEcCCCCceeEEEEEEeCCCCCCCCCCCe
Q 008873 162 EKT--GF---RHLYLHDINGTCLGP-ITEGD--WMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPV 233 (550)
Q Consensus 162 ~~~--g~---~~l~~~~~~~~~~~~-lT~~~--~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~~v~~~~~g~~~~~~~~ 233 (550)
... |+ ..+++++.+.++... +..++ +..... ...-++..++|.+.... ....++.+.. .+. . .
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-g~~~l~~~~~--~~~----~-~ 305 (620)
T COG1506 235 TESDRGLAEGDFILLLDGELGEVDGDLSSGDDTRGAWAV-EGGLDGDGLLFIATDGG-GSSPLFRVDD--LGG----G-V 305 (620)
T ss_pred cCCccCccccceEEEEeccccccceeeccCCcccCcHHh-ccccCCCcEEEEEecCC-CceEEEEEec--cCC----c-e
Confidence 321 32 355555522222221 12212 111111 12246677888888742 2467777665 221 1 2
Q ss_pred eeCCCCceEEEEECCCCCEEEEeecCCCCCCEEEEEEcCCCceeEeccCCCCChhhhhcCCCCCCeEEEEEcCCCcEEEE
Q 008873 234 KLTNGKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLYEQPLTVPRIKRLQLEPPDIVQIQANDGTVLYG 313 (550)
Q Consensus 234 ~lt~~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~ 313 (550)
.+...+......|+.+++.+++.++++..|+++++++. ++..+.+.. ....+.+..+.++|.+++++.||.+|++
T Consensus 306 ~~~~~~~~~v~~f~~~~~~~~~~~s~~~~p~~i~~~~~--~~~~~~~~~---~~~~~~~~~~~~~e~~~~~~~dG~~i~~ 380 (620)
T COG1506 306 EGLSGDDGGVPGFDVDGRKLALAYSSPTEPPEIYLYDR--GEEAKLTSS---NNSGLKKVKLAEPEPVTYKSNDGETIHG 380 (620)
T ss_pred eeecCCCceEEEEeeCCCEEEEEecCCCCccceEEEcC--CCceEEeec---ccccccccccCCceEEEEEcCCCCEEEE
Confidence 22222223333455599999999999999999999986 332232222 3356667889999999999999999999
Q ss_pred EEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCchhhHHHHhhccCCCch
Q 008873 314 ALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDA 393 (550)
Q Consensus 314 ~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~~~~~~~~~~~~~~~~ 393 (550)
++++|.+.... +++|+||++||||..+.. ..+....+.|+++||+|+.+|+||++|+|.+|......++|..++
T Consensus 381 ~l~~P~~~~~~-k~yP~i~~~hGGP~~~~~-----~~~~~~~q~~~~~G~~V~~~n~RGS~GyG~~F~~~~~~~~g~~~~ 454 (620)
T COG1506 381 WLYKPPGFDPR-KKYPLIVYIHGGPSAQVG-----YSFNPEIQVLASAGYAVLAPNYRGSTGYGREFADAIRGDWGGVDL 454 (620)
T ss_pred EEecCCCCCCC-CCCCEEEEeCCCCccccc-----cccchhhHHHhcCCeEEEEeCCCCCCccHHHHHHhhhhccCCccH
Confidence 99999987433 569999999999976642 245557899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCcccccchhhhhccCCC-------CC
Q 008873 394 EDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTFYTEKYMGLP-------SE 466 (550)
Q Consensus 394 ~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~~-------~~ 466 (550)
+|++++++++.+++.+|++||+|+|+||||||+++++++.+ +|+|+++.++.++|..+...+.+.+...+ +.
T Consensus 455 ~D~~~~~~~l~~~~~~d~~ri~i~G~SyGGymtl~~~~~~~-~f~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 (620)
T COG1506 455 EDLIAAVDALVKLPLVDPERIGITGGSYGGYMTLLAATKTP-RFKAAVAVAGGVDWLLYFGESTEGLRFDPEENGGGPPE 533 (620)
T ss_pred HHHHHHHHHHHhCCCcChHHeEEeccChHHHHHHHHHhcCc-hhheEEeccCcchhhhhccccchhhcCCHHHhCCCccc
Confidence 99999999999999999999999999999999999999866 89999999998888766554444433222 11
Q ss_pred CccccccCChhhhhhcCCCcEEEEecCCCCCCChHHHHHHHHHHHHcCCCeEEEEcCCCCCcCCCCCcHHHHHHHHHHHH
Q 008873 467 DPVGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFI 546 (550)
Q Consensus 467 ~~~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p~~~H~~~~~~~~~~~~~~~~~fl 546 (550)
+.+.|...||+.+++++++|+|||||+.|.+||++|+++|+++|+++|+++++++||+++|++..+++....++.+++||
T Consensus 534 ~~~~~~~~sp~~~~~~i~~P~LliHG~~D~~v~~~q~~~~~~aL~~~g~~~~~~~~p~e~H~~~~~~~~~~~~~~~~~~~ 613 (620)
T COG1506 534 DREKYEDRSPIFYADNIKTPLLLIHGEEDDRVPIEQAEQLVDALKRKGKPVELVVFPDEGHGFSRPENRVKVLKEILDWF 613 (620)
T ss_pred ChHHHHhcChhhhhcccCCCEEEEeecCCccCChHHHHHHHHHHHHcCceEEEEEeCCCCcCCCCchhHHHHHHHHHHHH
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhC
Q 008873 547 ERTL 550 (550)
Q Consensus 547 ~~~l 550 (550)
++||
T Consensus 614 ~~~~ 617 (620)
T COG1506 614 KRHL 617 (620)
T ss_pred HHHh
Confidence 9986
No 4
>PRK10115 protease 2; Provisional
Probab=100.00 E-value=3.9e-46 Score=389.56 Aligned_cols=481 Identities=15% Similarity=0.149 Sum_probs=334.2
Q ss_pred ceEEEcCCCCeEEEEEEeCCCCCeEEEeecCCCCCCCCCcccccCCCCCCCCCeEEEEEEECCCCceEEEEcccCCCCCC
Q 008873 5 TGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQN 84 (550)
Q Consensus 5 ~~~~wSPdg~~lay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~ 84 (550)
.++.|||||++|||... ....+ ..+|++.|+++|+...-.+ .
T Consensus 130 ~~~~~Spdg~~la~~~d-~~G~E------------------------------~~~l~v~d~~tg~~l~~~i-------~ 171 (686)
T PRK10115 130 GGMAITPDNTIMALAED-FLSRR------------------------------QYGIRFRNLETGNWYPELL-------D 171 (686)
T ss_pred eEEEECCCCCEEEEEec-CCCcE------------------------------EEEEEEEECCCCCCCCccc-------c
Confidence 56789999999999843 32222 3578999999986321111 1
Q ss_pred CCCceeEEEEECCCCeEEEEEEecC--CCceEEEEEECCCC--ceEEEEEeecCc-ee----eccCccccCC--------
Q 008873 85 YDEEYLARVNWMHGNILTAQVLNRS--QTKLKVLKFDIKTG--QRKVILVEELDS-WV----NLHDCFTPLD-------- 147 (550)
Q Consensus 85 ~~~~~~~~~~wspDg~~i~~~~~r~--~~~~~l~~~~~~~g--~~~~l~~~~~~~-~~----~~~~~~~~~~-------- 147 (550)
. .. ..+.|++||+.+++...+. ....+||+.++.++ +.+.|.++.+.. |. .....+....
T Consensus 172 ~-~~--~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~ 248 (686)
T PRK10115 172 N-VE--PSFVWANDSWTFYYVRKHPVTLLPYQVWRHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSE 248 (686)
T ss_pred C-cc--eEEEEeeCCCEEEEEEecCCCCCCCEEEEEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCcccc
Confidence 1 11 4589999999777765543 24478999999998 566676643221 11 0000000000
Q ss_pred ----------CCC--------------ccCCCcEEEEEccC-CccEEEEEeCC-Cceeeccccc--CeEEEEEEeEeecC
Q 008873 148 ----------KGV--------------TKYSGGFIWASEKT-GFRHLYLHDIN-GTCLGPITEG--DWMVEQIVGVNEAS 199 (550)
Q Consensus 148 ----------~~~--------------~~~~~~~~~~s~~~-g~~~l~~~~~~-~~~~~~lT~~--~~~~~~~~~~s~dg 199 (550)
..+ ....+.+++.++.+ ....|+.+++. .++.+.|... ++.+.++. + .+
T Consensus 249 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~-~--~~ 325 (686)
T PRK10115 249 VLLLDAELADAEPFVFLPRRKDHEYSLDHYQHRFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFT-L--FT 325 (686)
T ss_pred EEEEECcCCCCCceEEEECCCCCEEEEEeCCCEEEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEE-E--EC
Confidence 000 00001133333332 24456666654 2344444443 34454433 3 36
Q ss_pred CEEEEEEcCCCCceeEEEEEEeCCCCCCCCCCCeeeC-CCCceE-EEEEC--CCCCEEEEeecCCCCCCEEEEEEcCCCc
Q 008873 200 GQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLT-NGKGKH-VAVLD--HNMRNFVDFHDSLDSPPRILLCSLQDGS 275 (550)
Q Consensus 200 ~~l~f~~~~~~~~~~~l~~v~~~~~g~~~~~~~~~lt-~~~~~~-~~~~s--~dg~~l~~~~s~~~~p~~l~~~~~~~g~ 275 (550)
+.|++..+.++. ..|+.++. .+. .+..|+ ...... ....+ ++++.+++.++++..|+++|.++..+++
T Consensus 326 ~~l~~~~~~~g~--~~l~~~~~--~~~----~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~ 397 (686)
T PRK10115 326 DWLVVEERQRGL--TSLRQINR--KTR----EVIGIAFDDPAYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGE 397 (686)
T ss_pred CEEEEEEEeCCE--EEEEEEcC--CCC----ceEEecCCCCceEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCCc
Confidence 789998887764 67888886 333 445555 222222 22334 6677899999999999999999997765
Q ss_pred eeEeccCCCCChhhhhcCCCCCCeEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHh
Q 008873 276 LVLPLYEQPLTVPRIKRLQLEPPDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRA 355 (550)
Q Consensus 276 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~ 355 (550)
.+.++... .+.++...+ .++.+++++.||.+|+++++.++... ..++.|+||++|||++... .+.|....
T Consensus 398 -~~~l~~~~--~~~~~~~~~-~~e~v~~~s~DG~~Ip~~l~~~~~~~-~~~~~P~ll~~hGg~~~~~-----~p~f~~~~ 467 (686)
T PRK10115 398 -RRVLKQTE--VPGFDAANY-RSEHLWITARDGVEVPVSLVYHRKHF-RKGHNPLLVYGYGSYGASI-----DADFSFSR 467 (686)
T ss_pred -EEEEEecC--CCCcCcccc-EEEEEEEECCCCCEEEEEEEEECCCC-CCCCCCEEEEEECCCCCCC-----CCCccHHH
Confidence 45555432 123443344 88999999999999999665544321 2256799999999998764 23455567
Q ss_pred HHHHhCCcEEEEECCCCCCCCchhhHHHHhhccCCCchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhCCC
Q 008873 356 QYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPD 435 (550)
Q Consensus 356 ~~l~~~G~~vv~~d~rG~g~~~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~ 435 (550)
+.|+++||+|+.+|+||+|++|+.|........+..+++|+++++++|++++++|++|++|+|.|+||+++.+++.++|+
T Consensus 468 ~~l~~rG~~v~~~n~RGs~g~G~~w~~~g~~~~k~~~~~D~~a~~~~Lv~~g~~d~~rl~i~G~S~GG~l~~~~~~~~Pd 547 (686)
T PRK10115 468 LSLLDRGFVYAIVHVRGGGELGQQWYEDGKFLKKKNTFNDYLDACDALLKLGYGSPSLCYGMGGSAGGMLMGVAINQRPE 547 (686)
T ss_pred HHHHHCCcEEEEEEcCCCCccCHHHHHhhhhhcCCCcHHHHHHHHHHHHHcCCCChHHeEEEEECHHHHHHHHHHhcChh
Confidence 88999999999999999999999999988888888999999999999999999999999999999999999999999999
Q ss_pred eeEEEEEcCCcCCccccc---c---hhhh-hccCCCCCC--ccccccCChhhhhhcCCCc-EEEEecCCCCCCChHHHHH
Q 008873 436 VFQCAVSGAPVTSWDGYD---T---FYTE-KYMGLPSED--PVGYEYSSVMHHVHKMKGK-LLLVHGMIDENVHFRHTAR 505 (550)
Q Consensus 436 ~~~~~v~~~~~~~~~~~~---~---~~~~-~~~g~~~~~--~~~~~~~~~~~~~~~i~~P-~lii~G~~D~~v~~~~~~~ 505 (550)
+|+|+|+..|+.|+..+. . ...+ ...|.|++. .+.+.+.||+.++++++.| +||+||.+|.+||+.++.+
T Consensus 548 lf~A~v~~vp~~D~~~~~~~~~~p~~~~~~~e~G~p~~~~~~~~l~~~SP~~~v~~~~~P~lLi~~g~~D~RV~~~~~~k 627 (686)
T PRK10115 548 LFHGVIAQVPFVDVVTTMLDESIPLTTGEFEEWGNPQDPQYYEYMKSYSPYDNVTAQAYPHLLVTTGLHDSQVQYWEPAK 627 (686)
T ss_pred heeEEEecCCchhHhhhcccCCCCCChhHHHHhCCCCCHHHHHHHHHcCchhccCccCCCceeEEecCCCCCcCchHHHH
Confidence 999999999999986431 1 1111 223777643 2345679999999999999 6777999999999999999
Q ss_pred HHHHHHHcCCCeEEEEc---CCCCCcCCCCCcHHHH---HHHHHHHHHHh
Q 008873 506 LINALVAARKPYEILIF---PDERHMPRRHRDRIYM---EERIWEFIERT 549 (550)
Q Consensus 506 ~~~~l~~~~~~~~~~~~---p~~~H~~~~~~~~~~~---~~~~~~fl~~~ 549 (550)
++++|++++.+.+++++ +++||+. ..++... ....+.||...
T Consensus 628 ~~a~Lr~~~~~~~~vl~~~~~~~GHg~--~~~r~~~~~~~A~~~aFl~~~ 675 (686)
T PRK10115 628 WVAKLRELKTDDHLLLLCTDMDSGHGG--KSGRFKSYEGVAMEYAFLIAL 675 (686)
T ss_pred HHHHHHhcCCCCceEEEEecCCCCCCC--CcCHHHHHHHHHHHHHHHHHH
Confidence 99999999999888888 9999984 2333333 33446666543
No 5
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=100.00 E-value=1.5e-35 Score=289.92 Aligned_cols=251 Identities=37% Similarity=0.614 Sum_probs=205.4
Q ss_pred CCccceEEEcCCCCeEEEEEEeCCCCCeEEEeecCCCCCCCCCcccccCCCCCCCCCeEEEEEEECCCCceEEEEcccCC
Q 008873 1 MDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQCGG 80 (550)
Q Consensus 1 ~~~~~~~~wSPdg~~lay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~ 80 (550)
|++..++||||||++|||.+.|+++++.+.++.+.......+....++||++|++|+.++|+++|+++++..++....
T Consensus 100 ~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~-- 177 (353)
T PF00930_consen 100 FDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPN-- 177 (353)
T ss_dssp SSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---H--
T ss_pred cccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeecc--
Confidence 578899999999999999999999999999999976532136788999999999999999999999999887665420
Q ss_pred CCCCCCCceeEEEEECCCCe-EEEEEEecCCCceEEEEEECCCCceEEEEEeecCceeeccCccccCCCCCccCCCcEEE
Q 008873 81 TDQNYDEEYLARVNWMHGNI-LTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYSGGFIW 159 (550)
Q Consensus 81 ~~~~~~~~~~~~~~wspDg~-~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (550)
.+...+.++..+.|++|++ +++.+++|.++...|+.||+.+|+++.+..+..++|++....+.+. ..++++|++
T Consensus 178 -~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~----~~~~~~~l~ 252 (353)
T PF00930_consen 178 -SLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFL----GPDGNEFLW 252 (353)
T ss_dssp -HHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-----TTTSSEEEE
T ss_pred -ccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccc----cCCCCEEEE
Confidence 0124578999999999999 8888999999999999999999999999988888998654433332 014556999
Q ss_pred EEccCCccEEEEEeCCCceeecccccCeEEEEEEeEeecCCEEEEEEcCCCCceeEEEEEEeCCC-CCCCCCCCeeeCCC
Q 008873 160 ASEKTGFRHLYLHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPD-WNHTLEAPVKLTNG 238 (550)
Q Consensus 160 ~s~~~g~~~l~~~~~~~~~~~~lT~~~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~~v~~~~~-g~~~~~~~~~lt~~ 238 (550)
.++++|+.|||+++.+++..++||.|+|+|..+..|+++++.|||+++.+++.+++||++++ + ++ .+++||+.
T Consensus 253 ~s~~~G~~hly~~~~~~~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~--~~~~----~~~~LT~~ 326 (353)
T PF00930_consen 253 ISERDGYRHLYLYDLDGGKPRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSL--DSGG----EPKCLTCE 326 (353)
T ss_dssp EEETTSSEEEEEEETTSSEEEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEET--TETT----EEEESSTT
T ss_pred EEEcCCCcEEEEEcccccceeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEe--CCCC----CeEeccCC
Confidence 99999999999999999999999999999988888999999999999998888999999999 5 44 78999998
Q ss_pred CceE-EEEECCCCCEEEEeecCCCCCC
Q 008873 239 KGKH-VAVLDHNMRNFVDFHDSLDSPP 264 (550)
Q Consensus 239 ~~~~-~~~~s~dg~~l~~~~s~~~~p~ 264 (550)
.+.+ ++.|||||++++..+++++.||
T Consensus 327 ~~~~~~~~~Spdg~y~v~~~s~~~~P~ 353 (353)
T PF00930_consen 327 DGDHYSASFSPDGKYYVDTYSGPDTPP 353 (353)
T ss_dssp SSTTEEEEE-TTSSEEEEEEESSSSCE
T ss_pred CCCceEEEECCCCCEEEEEEcCCCCCC
Confidence 8777 8899999999999999999885
No 6
>PF00326 Peptidase_S9: Prolyl oligopeptidase family This family belongs to family S9 of the peptidase classification.; InterPro: IPR001375 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain covers the active site serine of the serine peptidases belonging to MEROPS peptidase family S9 (prolyl oligopeptidase family, clan SC). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Examples of protein families containing this domain are: Prolyl endopeptidase (3.4.21.26 from EC) (PE) (also called post-proline cleaving enzyme). PE is an enzyme that cleaves peptide bonds on the C-terminal side of prolyl residues. The sequence of PE has been obtained from a mammalian species (pig) and from bacteria (Flavobacterium meningosepticum and Aeromonas hydrophila); there is a high degree of sequence conservation between these sequences. Escherichia coli protease II (3.4.21.83 from EC) (oligopeptidase B) (gene prtB) which cleaves peptide bonds on the C-terminal side of lysyl and argininyl residues. Dipeptidyl peptidase IV (3.4.14.5 from EC) (DPP IV). DPP IV is an enzyme that removes N-terminal dipeptides sequentially from polypeptides having unsubstituted N-termini provided that the penultimate residue is proline. Saccharomyces cerevisiae (Baker's yeast) vacuolar dipeptidyl aminopeptidases A and B (DPAP A and DPAP B), encoded by the STE13 and DAP2 genes respectively. DPAP A is responsible for the proteolytic maturation of the alpha-factor precursor. Acylamino-acid-releasing enzyme (3.4.19.1 from EC) (acyl-peptide hydrolase). This enzyme catalyses the hydrolysis of the amino-terminal peptide bond of an N-acetylated protein to generate a N-acetylated amino acid and a protein with a free amino-terminus. These proteins belong to MEROPS peptidase families S9A, S9B and S9C.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 2AJ8_D 1ORV_D 2AJB_C 2BUC_D 1ORW_D 2AJC_D 2AJD_C 2BUA_A 2HU8_B 3O4J_B ....
Probab=100.00 E-value=8.6e-35 Score=265.21 Aligned_cols=199 Identities=36% Similarity=0.542 Sum_probs=178.0
Q ss_pred hhHhHHHHhCCcEEEEECCCCCCCCchhhHHHHhhccCCCchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHh
Q 008873 352 DMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLA 431 (550)
Q Consensus 352 ~~~~~~l~~~G~~vv~~d~rG~g~~~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~ 431 (550)
+...++|+++||+|+.+|+||++++|.+|......+++..+++|++++++++.+++.+|++||+|+|+|+||+++++++.
T Consensus 4 ~~~~~~la~~Gy~v~~~~~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~iD~~ri~i~G~S~GG~~a~~~~~ 83 (213)
T PF00326_consen 4 NWNAQLLASQGYAVLVPNYRGSGGYGKDFHEAGRGDWGQADVDDVVAAIEYLIKQYYIDPDRIGIMGHSYGGYLALLAAT 83 (213)
T ss_dssp SHHHHHHHTTT-EEEEEE-TTSSSSHHHHHHTTTTGTTHHHHHHHHHHHHHHHHTTSEEEEEEEEEEETHHHHHHHHHHH
T ss_pred eHHHHHHHhCCEEEEEEcCCCCCccchhHHHhhhccccccchhhHHHHHHHHhccccccceeEEEEcccccccccchhhc
Confidence 44688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCeeEEEEEcCCcCCcccccch---hhh-hcc--CCCCCCccccccCChhhhhhc--CCCcEEEEecCCCCCCChHHH
Q 008873 432 RFPDVFQCAVSGAPVTSWDGYDTF---YTE-KYM--GLPSEDPVGYEYSSVMHHVHK--MKGKLLLVHGMIDENVHFRHT 503 (550)
Q Consensus 432 ~~~~~~~~~v~~~~~~~~~~~~~~---~~~-~~~--g~~~~~~~~~~~~~~~~~~~~--i~~P~lii~G~~D~~v~~~~~ 503 (550)
++|++|+|+++.+|+.|+..+... +.. ++. +.++.+.+.|...++...+.+ +++|+||+||++|.+||+.++
T Consensus 84 ~~~~~f~a~v~~~g~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~P~li~hG~~D~~Vp~~~s 163 (213)
T PF00326_consen 84 QHPDRFKAAVAGAGVSDLFSYYGTTDIYTKAEYLEYGDPWDNPEFYRELSPISPADNVQIKPPVLIIHGENDPRVPPSQS 163 (213)
T ss_dssp HTCCGSSEEEEESE-SSTTCSBHHTCCHHHGHHHHHSSTTTSHHHHHHHHHGGGGGGCGGGSEEEEEEETTBSSSTTHHH
T ss_pred ccceeeeeeeccceecchhcccccccccccccccccCccchhhhhhhhhccccccccccCCCCEEEEccCCCCccCHHHH
Confidence 999999999999999998765433 333 222 566667888988999999999 889999999999999999999
Q ss_pred HHHHHHHHHcCCCeEEEEcCCCCCcCCCCCcHHHHHHHHHHHHHHhC
Q 008873 504 ARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIERTL 550 (550)
Q Consensus 504 ~~~~~~l~~~~~~~~~~~~p~~~H~~~~~~~~~~~~~~~~~fl~~~l 550 (550)
.+++++|++.|+++++++||+++|.+...++...+.+++++||+++|
T Consensus 164 ~~~~~~L~~~g~~~~~~~~p~~gH~~~~~~~~~~~~~~~~~f~~~~l 210 (213)
T PF00326_consen 164 LRLYNALRKAGKPVELLIFPGEGHGFGNPENRRDWYERILDFFDKYL 210 (213)
T ss_dssp HHHHHHHHHTTSSEEEEEETT-SSSTTSHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCCEEEEEcCcCCCCCCCchhHHHHHHHHHHHHHHHc
Confidence 99999999999999999999999999888888899999999999986
No 7
>COG1770 PtrB Protease II [Amino acid transport and metabolism]
Probab=100.00 E-value=1.2e-29 Score=247.27 Aligned_cols=460 Identities=17% Similarity=0.132 Sum_probs=319.6
Q ss_pred cceEEEcCCCCeEEEEEEeCCCCCeEEEeecCCCCCCCCCcccccCCCCCCCCCeEEEEEEECCCCceEEEEcccCCCCC
Q 008873 4 KTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQ 83 (550)
Q Consensus 4 ~~~~~wSPdg~~lay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~ 83 (550)
..++..|||++.+||.. |....++ -.|.+.||++|+...-.+
T Consensus 131 Lg~~~~s~D~~~la~s~-D~~G~e~------------------------------y~lr~kdL~tg~~~~d~i------- 172 (682)
T COG1770 131 LGAASISPDHNLLAYSV-DVLGDEQ------------------------------YTLRFKDLATGEELPDEI------- 172 (682)
T ss_pred eeeeeeCCCCceEEEEE-ecccccE------------------------------EEEEEEecccccccchhh-------
Confidence 46788999999999974 4333333 356889999997653322
Q ss_pred CCCCceeEEEEECCCCeEEEEEEecCC-CceEEEEEECCC--CceEEEEEeecCceeeccCccccCCCCCccCCCcEEEE
Q 008873 84 NYDEEYLARVNWMHGNILTAQVLNRSQ-TKLKVLKFDIKT--GQRKVILVEELDSWVNLHDCFTPLDKGVTKYSGGFIWA 160 (550)
Q Consensus 84 ~~~~~~~~~~~wspDg~~i~~~~~r~~-~~~~l~~~~~~~--g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (550)
..-...++|.+|++.+++...+.. ....||...+.+ .+.+.|.++.++.|.- .+. ..+.+.++++
T Consensus 173 ---~~~~~~~~Wa~d~~~lfYt~~d~~~rp~kv~~h~~gt~~~~d~lvyeE~d~~f~~------~v~---~s~s~~yi~i 240 (682)
T COG1770 173 ---TNTSGSFAWAADGKTLFYTRLDENHRPDKVWRHRLGTPGSSDELVYEEKDDRFFL------SVG---RSRSEAYIVI 240 (682)
T ss_pred ---cccccceEEecCCCeEEEEEEcCCCCcceEEEEecCCCCCcceEEEEcCCCcEEE------Eee---eccCCceEEE
Confidence 112455799999998777765554 456899988888 6778888887776531 111 1133447766
Q ss_pred EccC-CccEEEEEeCCC--ceeecccccCeEEEEEEeEeecCCEEEEEEcCCCCceeEEEEEEeCCCCC-----------
Q 008873 161 SEKT-GFRHLYLHDING--TCLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWN----------- 226 (550)
Q Consensus 161 s~~~-g~~~l~~~~~~~--~~~~~lT~~~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~~v~~~~~g~----------- 226 (550)
+-.+ .-.++++++.+. .+++.+..-.-.+ .......|+.+|+.+|.++ .++.|++.+.. ...
T Consensus 241 ~~~~~~tsE~~ll~a~~p~~~p~vv~pr~~g~--eY~~eh~~d~f~i~sN~~g-knf~l~~ap~~-~~~~~w~~~I~h~~ 316 (682)
T COG1770 241 SLGSHITSEVRLLDADDPEAEPKVVLPRENGV--EYSVEHGGDRFYILSNADG-KNFKLVRAPVS-ADKSNWRELIPHRE 316 (682)
T ss_pred EcCCCcceeEEEEecCCCCCceEEEEEcCCCc--EEeeeecCcEEEEEecCCC-cceEEEEccCC-CChhcCeeeeccCC
Confidence 5432 246788887654 3334333211111 1124556788999988877 56788877651 111
Q ss_pred --------------------CCCCCCeeeCCCC-ceEEEE-----------EC--CCCCEEEEeecCCCCCCEEEEEEcC
Q 008873 227 --------------------HTLEAPVKLTNGK-GKHVAV-----------LD--HNMRNFVDFHDSLDSPPRILLCSLQ 272 (550)
Q Consensus 227 --------------------~~~~~~~~lt~~~-~~~~~~-----------~s--~dg~~l~~~~s~~~~p~~l~~~~~~ 272 (550)
.....++...... +.+.++ .+ ++...|.+.+++.++|.+++-+|+.
T Consensus 317 ~~~l~~~~~f~~~lVl~eR~~glp~v~v~~~~~~~~~~i~f~~~ay~~~l~~~~e~~s~~lR~~ysS~ttP~~~~~~dm~ 396 (682)
T COG1770 317 DVRLEGVDLFADHLVLLERQEGLPRVVVRDRKTGEERGIAFDDEAYSAGLSGNPEFDSDRLRYSYSSMTTPATLFDYDMA 396 (682)
T ss_pred CceeeeeeeeccEEEEEecccCCceEEEEecCCCceeeEEecchhhhccccCCCCCCCccEEEEeecccccceeEEeecc
Confidence 0001111111111 111111 11 3556789999999999999999999
Q ss_pred CCceeEeccCCCCChhhhhcCCCCCCeEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccch
Q 008873 273 DGSLVLPLYEQPLTVPRIKRLQLEPPDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVD 352 (550)
Q Consensus 273 ~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~ 352 (550)
+++. +.|...+ ....++... -..+.+..+..||.+|+..+..-++.+ ..++.|++++.+|.-+... .. .|.
T Consensus 397 t~er-~~Lkqqe-V~~g~dp~~-Y~s~riwa~a~dgv~VPVSLvyrkd~~-~~g~~p~lLygYGaYG~s~-~p----~Fs 467 (682)
T COG1770 397 TGER-TLLKQQE-VPGGFDPED-YVSRRIWATADDGVQVPVSLVYRKDTK-LDGSAPLLLYGYGAYGISM-DP----SFS 467 (682)
T ss_pred CCcE-EEEEecc-CCCCCChhH-eEEEEEEEEcCCCcEeeEEEEEecccC-CCCCCcEEEEEeccccccC-Cc----Ccc
Confidence 9983 4444332 212233222 256888899899999999988776532 2367899999999765543 22 333
Q ss_pred hHhHHHHhCCcEEEEECCCCCCCCchhhHHHHhhccCCCchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhh
Q 008873 353 MRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLAR 432 (550)
Q Consensus 353 ~~~~~l~~~G~~vv~~d~rG~g~~~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~ 432 (550)
...-.|..+|++......||.|.-|..|.+............|+++++++|.++++.++++|+++|.|+||+++..++.+
T Consensus 468 ~~~lSLlDRGfiyAIAHVRGGgelG~~WYe~GK~l~K~NTf~DFIa~a~~Lv~~g~~~~~~i~a~GGSAGGmLmGav~N~ 547 (682)
T COG1770 468 IARLSLLDRGFVYAIAHVRGGGELGRAWYEDGKLLNKKNTFTDFIAAARHLVKEGYTSPDRIVAIGGSAGGMLMGAVANM 547 (682)
T ss_pred cceeeeecCceEEEEEEeecccccChHHHHhhhhhhccccHHHHHHHHHHHHHcCcCCccceEEeccCchhHHHHHHHhh
Confidence 33456789999999999999999999999988777778889999999999999999999999999999999999999999
Q ss_pred CCCeeEEEEEcCCcCCcccc---------cchhhhhccCCCCCCccc---cccCChhhhhhcCC-CcEEEEecCCCCCCC
Q 008873 433 FPDVFQCAVSGAPVTSWDGY---------DTFYTEKYMGLPSEDPVG---YEYSSVMHHVHKMK-GKLLLVHGMIDENVH 499 (550)
Q Consensus 433 ~~~~~~~~v~~~~~~~~~~~---------~~~~~~~~~g~~~~~~~~---~~~~~~~~~~~~i~-~P~lii~G~~D~~v~ 499 (550)
.|++|+++|+..|+.|.... ...|.|+ |.|. +++. +...||..++..-. +|+|++.|..|.+|.
T Consensus 548 ~P~lf~~iiA~VPFVDvltTMlD~slPLT~~E~~EW--GNP~-d~e~y~yikSYSPYdNV~a~~YP~ilv~~Gl~D~rV~ 624 (682)
T COG1770 548 APDLFAGIIAQVPFVDVLTTMLDPSLPLTVTEWDEW--GNPL-DPEYYDYIKSYSPYDNVEAQPYPAILVTTGLNDPRVQ 624 (682)
T ss_pred ChhhhhheeecCCccchhhhhcCCCCCCCccchhhh--CCcC-CHHHHHHHhhcCchhccccCCCCceEEEccccCCccc
Confidence 99999999999999885321 1123332 6666 4443 45678888777744 689999999999999
Q ss_pred hHHHHHHHHHHHHcCC---CeEEEEcCCCCCcC
Q 008873 500 FRHTARLINALVAARK---PYEILIFPDERHMP 529 (550)
Q Consensus 500 ~~~~~~~~~~l~~~~~---~~~~~~~p~~~H~~ 529 (550)
..+..+..++|++.+. ++-+.+--++||+-
T Consensus 625 YwEpAKWvAkLR~~~td~~plLlkt~M~aGHgG 657 (682)
T COG1770 625 YWEPAKWVAKLRELKTDGNPLLLKTNMDAGHGG 657 (682)
T ss_pred cchHHHHHHHHhhcccCCCcEEEEecccccCCC
Confidence 9999999999988764 45555557899974
No 8
>KOG2237 consensus Predicted serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=3.1e-26 Score=221.45 Aligned_cols=293 Identities=17% Similarity=0.197 Sum_probs=220.3
Q ss_pred CCCEEEEeecCCCCCCEEEEEEcCCCce-eEeccCCCCChhhhhcCCCCCCeEEEEEcCCCcEEEEEEEcCCCCCCCCCC
Q 008873 249 NMRNFVDFHDSLDSPPRILLCSLQDGSL-VLPLYEQPLTVPRIKRLQLEPPDIVQIQANDGTVLYGALYKPDESRYGPPP 327 (550)
Q Consensus 249 dg~~l~~~~s~~~~p~~l~~~~~~~g~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~P~~~~~~~~~ 327 (550)
+.+.+-|..+++-+|+.+|.+|+.++.. ...+.+.....+.+..- .-.++++.+++.||..|+..++.-... ...++
T Consensus 392 ~~~~~~f~~sS~l~P~~iy~yDl~~~~~e~~vf~e~~~~lpg~~~s-~y~~~r~~~~SkDGt~VPM~Iv~kk~~-k~dg~ 469 (712)
T KOG2237|consen 392 KSSTIRFQFSSFLTPGSIYDYDLANGKPEPSVFREITVVLPGFDAS-DYVVERIEVSSKDGTKVPMFIVYKKDI-KLDGS 469 (712)
T ss_pred CCceEEEEEeccCCCCeEEEeeccCCCCCCcceeeeccccCccccc-ceEEEEEEEecCCCCccceEEEEechh-hhcCC
Confidence 4567889999999999999999988832 11222221222333322 336799999999999999998884332 23357
Q ss_pred ceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCchhhHHHHhhccCCCchHHHHHHHHHHHHcC
Q 008873 328 YKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQG 407 (550)
Q Consensus 328 ~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~ 407 (550)
.|++++.||+.+.. +...|+.. ...|..+|++....|.||.|++|.+|+........+..++|++++++||.+++
T Consensus 470 ~P~LLygYGay~is-l~p~f~~s----rl~lld~G~Vla~a~VRGGGe~G~~WHk~G~lakKqN~f~Dfia~AeyLve~g 544 (712)
T KOG2237|consen 470 KPLLLYGYGAYGIS-LDPSFRAS----RLSLLDRGWVLAYANVRGGGEYGEQWHKDGRLAKKQNSFDDFIACAEYLVENG 544 (712)
T ss_pred CceEEEEeccccee-eccccccc----eeEEEecceEEEEEeeccCcccccchhhccchhhhcccHHHHHHHHHHHHHcC
Confidence 89999999986654 44555432 33455699999999999999999999998877777888999999999999999
Q ss_pred CCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCccccc-----chhhhhc--cCCCCCCccccccCChhhhh
Q 008873 408 LAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYD-----TFYTEKY--MGLPSEDPVGYEYSSVMHHV 480 (550)
Q Consensus 408 ~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~~~~-----~~~~~~~--~g~~~~~~~~~~~~~~~~~~ 480 (550)
++.++++++.|.|.||.++..++-++|++|+|+++..|+.|+..+. ..+.+.+ .|.|. +.+.+...+++..+
T Consensus 545 yt~~~kL~i~G~SaGGlLvga~iN~rPdLF~avia~VpfmDvL~t~~~tilplt~sd~ee~g~p~-~~~~~~~i~~y~pv 623 (712)
T KOG2237|consen 545 YTQPSKLAIEGGSAGGLLVGACINQRPDLFGAVIAKVPFMDVLNTHKDTILPLTTSDYEEWGNPE-DFEDLIKISPYSPV 623 (712)
T ss_pred CCCccceeEecccCccchhHHHhccCchHhhhhhhcCcceehhhhhccCccccchhhhcccCChh-hhhhhheecccCcc
Confidence 9999999999999999999999999999999999999999875431 1222322 24444 33445555666666
Q ss_pred hcCC-----CcEEEEecCCCCCCChHHHHHHHHHHHHcC-------CCeEEEEcCCCCCcCCCC-CcHHHHHHHHHHHHH
Q 008873 481 HKMK-----GKLLLVHGMIDENVHFRHTARLINALVAAR-------KPYEILIFPDERHMPRRH-RDRIYMEERIWEFIE 547 (550)
Q Consensus 481 ~~i~-----~P~lii~G~~D~~v~~~~~~~~~~~l~~~~-------~~~~~~~~p~~~H~~~~~-~~~~~~~~~~~~fl~ 547 (550)
++++ .-+|+..+.+|++|++.++.++.++|+..- .++-+.+.+++||+...+ ..+.+-.....+||.
T Consensus 624 ~~i~~q~~YPS~lvtta~hD~RV~~~~~~K~vAklre~~~~~~~q~~pvll~i~~~agH~~~~~~~k~~~E~a~~yaFl~ 703 (712)
T KOG2237|consen 624 DNIKKQVQYPSMLVTTADHDDRVGPLESLKWVAKLREATCDSLKQTNPVLLRIETKAGHGAEKPRFKQIEEAAFRYAFLA 703 (712)
T ss_pred CCCchhccCcceEEeeccCCCcccccchHHHHHHHHHHhhcchhcCCCEEEEEecCCccccCCchHHHHHHHHHHHHHHH
Confidence 6665 357899999999999999999999997742 468888999999987432 333444555667776
Q ss_pred Hh
Q 008873 548 RT 549 (550)
Q Consensus 548 ~~ 549 (550)
+.
T Consensus 704 K~ 705 (712)
T KOG2237|consen 704 KM 705 (712)
T ss_pred HH
Confidence 54
No 9
>COG1505 Serine proteases of the peptidase family S9A [Amino acid transport and metabolism]
Probab=99.96 E-value=7.1e-28 Score=231.78 Aligned_cols=292 Identities=20% Similarity=0.225 Sum_probs=237.6
Q ss_pred EECCCCCEEEEeecCCCCCCEEEEEEcCCCceeEeccCCCCChhhhhcCCCCCCeEEEEEcCCCcEEEEEEEcCCCCCCC
Q 008873 245 VLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLYEQPLTVPRIKRLQLEPPDIVQIQANDGTVLYGALYKPDESRYG 324 (550)
Q Consensus 245 ~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~P~~~~~~ 324 (550)
.-+-+|+.+.+..++...|+.+++.+..+++ ++.+... ...++.- -..++++..++.||++|++++.. ++.+.
T Consensus 346 ~~~~~g~ev~l~~t~F~tP~~~~r~~~~~~e-Le~ik~~---p~~FDa~-~~~veQ~~atSkDGT~IPYFiv~-K~~~~- 418 (648)
T COG1505 346 SADKDGDEVFLAFTSFTTPSTLYRLDLFGGE-LEVIREQ---PVQFDAD-NYEVEQFFATSKDGTRIPYFIVR-KGAKK- 418 (648)
T ss_pred cCCCCCcEEEEEeecccCCCceEEEecCCce-ehhhhhc---cCCcCcc-CceEEEEEEEcCCCccccEEEEe-cCCcC-
Confidence 3345788899999999999999999985443 5555442 2233322 34678999999999999999998 55432
Q ss_pred CCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCchhhHHHHhhccCCCchHHHHHHHHHHH
Q 008873 325 PPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLI 404 (550)
Q Consensus 325 ~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~~~~~~~~~~~~~~~~~D~~~~~~~l~ 404 (550)
.+.|++|+-|||.+... . +.+......+.++|.+.|..|.||.|.+|.+|+++......+..++|++++++.|+
T Consensus 419 -d~~pTll~aYGGF~vsl-t----P~fs~~~~~WLerGg~~v~ANIRGGGEfGp~WH~Aa~k~nrq~vfdDf~AVaedLi 492 (648)
T COG1505 419 -DENPTLLYAYGGFNISL-T----PRFSGSRKLWLERGGVFVLANIRGGGEFGPEWHQAGMKENKQNVFDDFIAVAEDLI 492 (648)
T ss_pred -CCCceEEEecccccccc-C----CccchhhHHHHhcCCeEEEEecccCCccCHHHHHHHhhhcchhhhHHHHHHHHHHH
Confidence 26799999999866543 2 34444457788999999999999999999999999988888899999999999999
Q ss_pred HcCCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCcccccc-----hhhhhccCCCCC--CccccccCChh
Q 008873 405 KQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDT-----FYTEKYMGLPSE--DPVGYEYSSVM 477 (550)
Q Consensus 405 ~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~~~~~-----~~~~~~~g~~~~--~~~~~~~~~~~ 477 (550)
++++..+++++|.|.|-||.++..+++++|++|.|+++..|+.|+..|.. .|...| |.|.. +.....++||+
T Consensus 493 ~rgitspe~lgi~GgSNGGLLvg~alTQrPelfgA~v~evPllDMlRYh~l~aG~sW~~EY-G~Pd~P~d~~~l~~YSPy 571 (648)
T COG1505 493 KRGITSPEKLGIQGGSNGGLLVGAALTQRPELFGAAVCEVPLLDMLRYHLLTAGSSWIAEY-GNPDDPEDRAFLLAYSPY 571 (648)
T ss_pred HhCCCCHHHhhhccCCCCceEEEeeeccChhhhCceeeccchhhhhhhcccccchhhHhhc-CCCCCHHHHHHHHhcCch
Confidence 99999999999999999999999999999999999999999999987653 244444 55543 23456788998
Q ss_pred hhhhcCC--CcEEEEecCCCCCCChHHHHHHHHHHHHcCCCeEEEEcCCCCCcCCCCCcH-HHHHHHHHHHHHHhC
Q 008873 478 HHVHKMK--GKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDR-IYMEERIWEFIERTL 550 (550)
Q Consensus 478 ~~~~~i~--~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p~~~H~~~~~~~~-~~~~~~~~~fl~~~l 550 (550)
++++.-+ .|+||..+..|++|+|.++++|+.+|++.+.++-+.+-.++||+-..+... ......++.||.+.|
T Consensus 572 ~nl~~g~kYP~~LITTs~~DDRVHPaHarKfaa~L~e~~~pv~~~e~t~gGH~g~~~~~~~A~~~a~~~afl~r~L 647 (648)
T COG1505 572 HNLKPGQKYPPTLITTSLHDDRVHPAHARKFAAKLQEVGAPVLLREETKGGHGGAAPTAEIARELADLLAFLLRTL 647 (648)
T ss_pred hcCCccccCCCeEEEcccccccccchHHHHHHHHHHhcCCceEEEeecCCcccCCCChHHHHHHHHHHHHHHHHhh
Confidence 8887743 699999999999999999999999999999999999999999987554443 445566788888775
No 10
>PRK13604 luxD acyl transferase; Provisional
Probab=99.92 E-value=3.7e-24 Score=197.46 Aligned_cols=214 Identities=13% Similarity=0.088 Sum_probs=154.6
Q ss_pred CeEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCC-CCC
Q 008873 298 PDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGT-ARR 376 (550)
Q Consensus 298 ~~~~~~~~~~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~-g~~ 376 (550)
+....+.+.+|..|.||+..|.+.. .++.|+||++||-..... .+..++++|+++||+|+.+|.||+ |.|
T Consensus 9 ~~~~~~~~~dG~~L~Gwl~~P~~~~--~~~~~~vIi~HGf~~~~~-------~~~~~A~~La~~G~~vLrfD~rg~~GeS 79 (307)
T PRK13604 9 TIDHVICLENGQSIRVWETLPKENS--PKKNNTILIASGFARRMD-------HFAGLAEYLSSNGFHVIRYDSLHHVGLS 79 (307)
T ss_pred chhheEEcCCCCEEEEEEEcCcccC--CCCCCEEEEeCCCCCChH-------HHHHHHHHHHHCCCEEEEecCCCCCCCC
Confidence 3445677889999999999997431 256789999999554321 245568999999999999999887 777
Q ss_pred chhhHHHHhhccCCCchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCcccccchh
Q 008873 377 GLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTFY 456 (550)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 456 (550)
+.++....... ...|+.++++|+.++ +.++|+|+||||||.++..+|.. + .++++|+.+|+.++..+....
T Consensus 80 ~G~~~~~t~s~----g~~Dl~aaid~lk~~---~~~~I~LiG~SmGgava~~~A~~-~-~v~~lI~~sp~~~l~d~l~~~ 150 (307)
T PRK13604 80 SGTIDEFTMSI----GKNSLLTVVDWLNTR---GINNLGLIAASLSARIAYEVINE-I-DLSFLITAVGVVNLRDTLERA 150 (307)
T ss_pred CCccccCcccc----cHHHHHHHHHHHHhc---CCCceEEEEECHHHHHHHHHhcC-C-CCCEEEEcCCcccHHHHHHHh
Confidence 76664332211 278999999999876 34689999999999998777664 3 389999999998854211100
Q ss_pred hhh---------------ccCCCCCCc---------cccccCChhhhhhcCCCcEEEEecCCCCCCChHHHHHHHHHHHH
Q 008873 457 TEK---------------YMGLPSEDP---------VGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVA 512 (550)
Q Consensus 457 ~~~---------------~~g~~~~~~---------~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~ 512 (550)
... +.|...... ......++...+++++.|+|+|||+.|+.||++.+.++++++..
T Consensus 151 ~~~~~~~~p~~~lp~~~d~~g~~l~~~~f~~~~~~~~~~~~~s~i~~~~~l~~PvLiIHG~~D~lVp~~~s~~l~e~~~s 230 (307)
T PRK13604 151 LGYDYLSLPIDELPEDLDFEGHNLGSEVFVTDCFKHGWDTLDSTINKMKGLDIPFIAFTANNDSWVKQSEVIDLLDSIRS 230 (307)
T ss_pred hhcccccCcccccccccccccccccHHHHHHHHHhcCccccccHHHHHhhcCCCEEEEEcCCCCccCHHHHHHHHHHhcc
Confidence 000 000000000 01123455677888999999999999999999999999998632
Q ss_pred cCCCeEEEEcCCCCCcCCC
Q 008873 513 ARKPYEILIFPDERHMPRR 531 (550)
Q Consensus 513 ~~~~~~~~~~p~~~H~~~~ 531 (550)
.+.++.++|++.|.+..
T Consensus 231 --~~kkl~~i~Ga~H~l~~ 247 (307)
T PRK13604 231 --EQCKLYSLIGSSHDLGE 247 (307)
T ss_pred --CCcEEEEeCCCccccCc
Confidence 57899999999999843
No 11
>PRK10566 esterase; Provisional
Probab=99.92 E-value=1.2e-23 Score=197.12 Aligned_cols=225 Identities=19% Similarity=0.115 Sum_probs=149.6
Q ss_pred EEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCchh-hHHHHhh--c
Q 008873 311 LYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLK-FEASIKH--N 387 (550)
Q Consensus 311 l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~~-~~~~~~~--~ 387 (550)
+....+.|.+. .+++.|+||++||.++... .+..+++.|+++||.|+++|+||+|.+... ....... .
T Consensus 12 ~~~~~~~p~~~--~~~~~p~vv~~HG~~~~~~-------~~~~~~~~l~~~G~~v~~~d~~g~G~~~~~~~~~~~~~~~~ 82 (249)
T PRK10566 12 IEVLHAFPAGQ--RDTPLPTVFFYHGFTSSKL-------VYSYFAVALAQAGFRVIMPDAPMHGARFSGDEARRLNHFWQ 82 (249)
T ss_pred cceEEEcCCCC--CCCCCCEEEEeCCCCcccc-------hHHHHHHHHHhCCCEEEEecCCcccccCCCccccchhhHHH
Confidence 44566777642 1246799999999766542 234468889999999999999998753111 0000000 0
Q ss_pred cCCCchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCccccc-chhhhhccCCCCC
Q 008873 388 CGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYD-TFYTEKYMGLPSE 466 (550)
Q Consensus 388 ~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~~~~g~~~~ 466 (550)
......+|+.++++++.+++.+|.++|+++|||+||++++.++.++|+..++++. .+........ ..+.......+..
T Consensus 83 ~~~~~~~~~~~~~~~l~~~~~~~~~~i~v~G~S~Gg~~al~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 161 (249)
T PRK10566 83 ILLQNMQEFPTLRAAIREEGWLLDDRLAVGGASMGGMTALGIMARHPWVKCVASL-MGSGYFTSLARTLFPPLIPETAAQ 161 (249)
T ss_pred HHHHHHHHHHHHHHHHHhcCCcCccceeEEeecccHHHHHHHHHhCCCeeEEEEe-eCcHHHHHHHHHhccccccccccc
Confidence 0012357788889999888888999999999999999999999988875444332 2211110000 0000000000000
Q ss_pred Cc------cccccCChhhhhhcC-CCcEEEEecCCCCCCChHHHHHHHHHHHHcCC--CeEEEEcCCCCCcCCCCCcHHH
Q 008873 467 DP------VGYEYSSVMHHVHKM-KGKLLLVHGMIDENVHFRHTARLINALVAARK--PYEILIFPDERHMPRRHRDRIY 537 (550)
Q Consensus 467 ~~------~~~~~~~~~~~~~~i-~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~--~~~~~~~p~~~H~~~~~~~~~~ 537 (550)
.. ..+...++...+.++ ++|+|++||++|..+|+.++.+++++++.++. +++++.+++++|.+. ..
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~i~~~P~Lii~G~~D~~v~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~H~~~-----~~ 236 (249)
T PRK10566 162 QAEFNNIVAPLAEWEVTHQLEQLADRPLLLWHGLADDVVPAAESLRLQQALRERGLDKNLTCLWEPGVRHRIT-----PE 236 (249)
T ss_pred HHHHHHHHHHHhhcChhhhhhhcCCCCEEEEEcCCCCcCCHHHHHHHHHHHHhcCCCcceEEEecCCCCCccC-----HH
Confidence 00 011223344456666 68999999999999999999999999998886 478999999999974 24
Q ss_pred HHHHHHHHHHHhC
Q 008873 538 MEERIWEFIERTL 550 (550)
Q Consensus 538 ~~~~~~~fl~~~l 550 (550)
..+.+++||+++|
T Consensus 237 ~~~~~~~fl~~~~ 249 (249)
T PRK10566 237 ALDAGVAFFRQHL 249 (249)
T ss_pred HHHHHHHHHHhhC
Confidence 6789999999986
No 12
>PLN02298 hydrolase, alpha/beta fold family protein
Probab=99.91 E-value=2.3e-22 Score=196.41 Aligned_cols=242 Identities=19% Similarity=0.208 Sum_probs=165.0
Q ss_pred CCCCeEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCC
Q 008873 295 LEPPDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTA 374 (550)
Q Consensus 295 ~~~~~~~~~~~~~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g 374 (550)
..+.+...|+..||.+|++..+.|.+.. .+.|+||++||.+... .| .+...+..|+++||.|+++|+||+|
T Consensus 29 ~~~~~~~~~~~~dg~~l~~~~~~~~~~~---~~~~~VvllHG~~~~~----~~--~~~~~~~~L~~~Gy~V~~~D~rGhG 99 (330)
T PLN02298 29 GIKGSKSFFTSPRGLSLFTRSWLPSSSS---PPRALIFMVHGYGNDI----SW--TFQSTAIFLAQMGFACFALDLEGHG 99 (330)
T ss_pred CCccccceEEcCCCCEEEEEEEecCCCC---CCceEEEEEcCCCCCc----ce--ehhHHHHHHHhCCCEEEEecCCCCC
Confidence 3456777888889999999998886421 3468999999975432 12 2233467788999999999999999
Q ss_pred CCchhhHHHHhhccCCCchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCccccc-
Q 008873 375 RRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYD- 453 (550)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~~~~- 453 (550)
.+...... ... -....+|+.++++++......+..+++|+||||||.+++.++.++|++++++|+.+|........
T Consensus 100 ~S~~~~~~--~~~-~~~~~~D~~~~i~~l~~~~~~~~~~i~l~GhSmGG~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~ 176 (330)
T PLN02298 100 RSEGLRAY--VPN-VDLVVEDCLSFFNSVKQREEFQGLPRFLYGESMGGAICLLIHLANPEGFDGAVLVAPMCKISDKIR 176 (330)
T ss_pred CCCCcccc--CCC-HHHHHHHHHHHHHHHHhcccCCCCCEEEEEecchhHHHHHHHhcCcccceeEEEecccccCCcccC
Confidence 87531110 000 01126789999999987644455689999999999999999999999999999998865432100
Q ss_pred -ch-------hhhhccC----CCCC------------------CccccccCC--------------hhhhhhcCCCcEEE
Q 008873 454 -TF-------YTEKYMG----LPSE------------------DPVGYEYSS--------------VMHHVHKMKGKLLL 489 (550)
Q Consensus 454 -~~-------~~~~~~g----~~~~------------------~~~~~~~~~--------------~~~~~~~i~~P~li 489 (550)
.. +..++.. .+.. ++..|.... ....+.++++|+||
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~PvLi 256 (330)
T PLN02298 177 PPWPIPQILTFVARFLPTLAIVPTADLLEKSVKVPAKKIIAKRNPMRYNGKPRLGTVVELLRVTDYLGKKLKDVSIPFIV 256 (330)
T ss_pred CchHHHHHHHHHHHHCCCCccccCCCcccccccCHHHHHHHHhCccccCCCccHHHHHHHHHHHHHHHHhhhhcCCCEEE
Confidence 00 0011100 0000 000111000 12235678899999
Q ss_pred EecCCCCCCChHHHHHHHHHHHHcCCCeEEEEcCCCCCcCCC--C-CcHHHHHHHHHHHHHHhC
Q 008873 490 VHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRR--H-RDRIYMEERIWEFIERTL 550 (550)
Q Consensus 490 i~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p~~~H~~~~--~-~~~~~~~~~~~~fl~~~l 550 (550)
+||+.|..+|++.+.++++++.. ...+++++++++|.+.. + .....+.+.+.+||++++
T Consensus 257 i~G~~D~ivp~~~~~~l~~~i~~--~~~~l~~~~~a~H~~~~e~pd~~~~~~~~~i~~fl~~~~ 318 (330)
T PLN02298 257 LHGSADVVTDPDVSRALYEEAKS--EDKTIKIYDGMMHSLLFGEPDENIEIVRRDILSWLNERC 318 (330)
T ss_pred EecCCCCCCCHHHHHHHHHHhcc--CCceEEEcCCcEeeeecCCCHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999887742 35689999999999743 2 234668889999998764
No 13
>PRK05077 frsA fermentation/respiration switch protein; Reviewed
Probab=99.91 E-value=1.8e-22 Score=200.14 Aligned_cols=229 Identities=14% Similarity=0.094 Sum_probs=159.5
Q ss_pred CCeEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCC
Q 008873 297 PPDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARR 376 (550)
Q Consensus 297 ~~~~~~~~~~~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~ 376 (550)
..+.+.|+..+|..|+++++.|... ++.|+||++||....+. + .+...++.|+++||+|+++|+||+|.+
T Consensus 167 ~~e~v~i~~~~g~~l~g~l~~P~~~----~~~P~Vli~gG~~~~~~--~----~~~~~~~~La~~Gy~vl~~D~pG~G~s 236 (414)
T PRK05077 167 ELKELEFPIPGGGPITGFLHLPKGD----GPFPTVLVCGGLDSLQT--D----YYRLFRDYLAPRGIAMLTIDMPSVGFS 236 (414)
T ss_pred ceEEEEEEcCCCcEEEEEEEECCCC----CCccEEEEeCCcccchh--h----hHHHHHHHHHhCCCEEEEECCCCCCCC
Confidence 5789999998888999999999742 57799886655332211 1 233457789999999999999999876
Q ss_pred chhhHHHHhhccCCCchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCccc-c---
Q 008873 377 GLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDG-Y--- 452 (550)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~~-~--- 452 (550)
..... .........++++++...+.+|.+||+++|+|+||++++.++..+|++++++|+.+|+.+... .
T Consensus 237 ~~~~~-------~~d~~~~~~avld~l~~~~~vd~~ri~l~G~S~GG~~Al~~A~~~p~ri~a~V~~~~~~~~~~~~~~~ 309 (414)
T PRK05077 237 SKWKL-------TQDSSLLHQAVLNALPNVPWVDHTRVAAFGFRFGANVAVRLAYLEPPRLKAVACLGPVVHTLLTDPKR 309 (414)
T ss_pred CCCCc-------cccHHHHHHHHHHHHHhCcccCcccEEEEEEChHHHHHHHHHHhCCcCceEEEEECCccchhhcchhh
Confidence 43100 001112235788999999899999999999999999999999988999999999988764210 0
Q ss_pred ----cchhh---hhccCCCCCCccccc----cCCh--hh-hhhcCCCcEEEEecCCCCCCChHHHHHHHHHHHHcCCCeE
Q 008873 453 ----DTFYT---EKYMGLPSEDPVGYE----YSSV--MH-HVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYE 518 (550)
Q Consensus 453 ----~~~~~---~~~~g~~~~~~~~~~----~~~~--~~-~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~ 518 (550)
...+. ...++.+..+.+.+. ..+. .. ...++++|+|++||++|.++|++++..+.+. ..+.+
T Consensus 310 ~~~~p~~~~~~la~~lg~~~~~~~~l~~~l~~~sl~~~~~l~~~i~~PvLiI~G~~D~ivP~~~a~~l~~~----~~~~~ 385 (414)
T PRK05077 310 QQQVPEMYLDVLASRLGMHDASDEALRVELNRYSLKVQGLLGRRCPTPMLSGYWKNDPFSPEEDSRLIASS----SADGK 385 (414)
T ss_pred hhhchHHHHHHHHHHhCCCCCChHHHHHHhhhccchhhhhhccCCCCcEEEEecCCCCCCCHHHHHHHHHh----CCCCe
Confidence 00010 011233322221111 1111 01 1256889999999999999999999866543 34678
Q ss_pred EEEcCCCCCcCCCCCcHHHHHHHHHHHHHHhC
Q 008873 519 ILIFPDERHMPRRHRDRIYMEERIWEFIERTL 550 (550)
Q Consensus 519 ~~~~p~~~H~~~~~~~~~~~~~~~~~fl~~~l 550 (550)
++++|++ |.+ +........+.+||+++|
T Consensus 386 l~~i~~~-~~~---e~~~~~~~~i~~wL~~~l 413 (414)
T PRK05077 386 LLEIPFK-PVY---RNFDKALQEISDWLEDRL 413 (414)
T ss_pred EEEccCC-Ccc---CCHHHHHHHHHHHHHHHh
Confidence 8999986 433 467888999999999876
No 14
>PLN02442 S-formylglutathione hydrolase
Probab=99.90 E-value=1.7e-22 Score=191.15 Aligned_cols=245 Identities=14% Similarity=0.140 Sum_probs=161.8
Q ss_pred CCCeEEEEEcC-CCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCC
Q 008873 296 EPPDIVQIQAN-DGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTA 374 (550)
Q Consensus 296 ~~~~~~~~~~~-~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g 374 (550)
...+.+++.+. -|..+.+.+|.|+.. ..+++|+|+++||.++... .|.. .....+.++..|++|++||..++|
T Consensus 16 ~~~~~~~~~s~~l~~~~~~~vy~P~~~--~~~~~Pvv~~lHG~~~~~~---~~~~-~~~~~~~~~~~g~~Vv~pd~~~~g 89 (283)
T PLN02442 16 GFNRRYKHFSSTLGCSMTFSVYFPPAS--DSGKVPVLYWLSGLTCTDE---NFIQ-KSGAQRAAAARGIALVAPDTSPRG 89 (283)
T ss_pred CEEEEEEEeccccCCceEEEEEcCCcc--cCCCCCEEEEecCCCcChH---HHHH-hhhHHHHHhhcCeEEEecCCCCCC
Confidence 44566677663 567899999999842 2368999999999766532 2321 111346667889999999976544
Q ss_pred C--C----------chh-hHHHHhhccCCCchHH-HH-HHHHHHHHc-CCCCCCceEEEEechhHHHHHHHHhhCCCeeE
Q 008873 375 R--R----------GLK-FEASIKHNCGRIDAED-QL-TGAEWLIKQ-GLAKVGHIGLYGWSYGGYLSAITLARFPDVFQ 438 (550)
Q Consensus 375 ~--~----------~~~-~~~~~~~~~~~~~~~D-~~-~~~~~l~~~-~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~ 438 (550)
. . +.. +.......++.....+ +. +..+++.+. ..+|.++++|+|+||||++++.++.++|++|+
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~i~G~S~GG~~a~~~a~~~p~~~~ 169 (283)
T PLN02442 90 LNVEGEADSWDFGVGAGFYLNATQEKWKNWRMYDYVVKELPKLLSDNFDQLDTSRASIFGHSMGGHGALTIYLKNPDKYK 169 (283)
T ss_pred CCCCCCccccccCCCcceeeccccCCCcccchhhhHHHHHHHHHHHHHHhcCCCceEEEEEChhHHHHHHHHHhCchhEE
Confidence 1 1 111 1111111111111111 22 222233332 33688999999999999999999999999999
Q ss_pred EEEEcCCcCCcccc--cchhhhhccCCCCCCccccccCChhhhhhcCCCcEEEEecCCCCCCChH-HHHHHHHHHHHcCC
Q 008873 439 CAVSGAPVTSWDGY--DTFYTEKYMGLPSEDPVGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFR-HTARLINALVAARK 515 (550)
Q Consensus 439 ~~v~~~~~~~~~~~--~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~-~~~~~~~~l~~~~~ 515 (550)
++++.+|+.++... .......+++.+....+.+...+++..+.+.++|+|++||+.|+.++.. ++..+++++++.+.
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~~~~~~~~~~~pvli~~G~~D~~v~~~~~s~~~~~~l~~~g~ 249 (283)
T PLN02442 170 SVSAFAPIANPINCPWGQKAFTNYLGSDKADWEEYDATELVSKFNDVSATILIDQGEADKFLKEQLLPENFEEACKEAGA 249 (283)
T ss_pred EEEEECCccCcccCchhhHHHHHHcCCChhhHHHcChhhhhhhccccCCCEEEEECCCCccccccccHHHHHHHHHHcCC
Confidence 99999998875422 1112234455544444445555555666667899999999999999974 68899999999999
Q ss_pred CeEEEEcCCCCCcCCCCCcHHHHHHHHHHHHHHh
Q 008873 516 PYEILIFPDERHMPRRHRDRIYMEERIWEFIERT 549 (550)
Q Consensus 516 ~~~~~~~p~~~H~~~~~~~~~~~~~~~~~fl~~~ 549 (550)
++++.++|+++|.+. ....+.+..+.|..++
T Consensus 250 ~~~~~~~pg~~H~~~---~~~~~i~~~~~~~~~~ 280 (283)
T PLN02442 250 PVTLRLQPGYDHSYF---FIATFIDDHINHHAQA 280 (283)
T ss_pred CeEEEEeCCCCccHH---HHHHHHHHHHHHHHHH
Confidence 999999999999874 3344445555555544
No 15
>TIGR02821 fghA_ester_D S-formylglutathione hydrolase. This model describes a protein family from bacteria, yeast, and human, with a conserved critical role in formaldehyde detoxification as S-formylglutathione hydrolase (EC 3.1.2.12). Members in eukaryotes such as the human protein are better known as esterase D (EC 3.1.1.1), an enzyme with broad specificity, although S-formylglutathione hydrolase has now been demonstrated as well.
Probab=99.89 E-value=2.4e-21 Score=183.10 Aligned_cols=242 Identities=14% Similarity=0.132 Sum_probs=162.4
Q ss_pred CCeEEEEEcC-CCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECC--CCC
Q 008873 297 PPDIVQIQAN-DGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDN--RGT 373 (550)
Q Consensus 297 ~~~~~~~~~~-~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~--rG~ 373 (550)
+.+.+.+.+. .+..+.+.+|.|++.. .+++|+|+++||.+.... .|... .....++++.|+.||+||. ||+
T Consensus 12 ~~~~~~~~s~~~~~~~~~~v~~P~~~~--~~~~P~vvllHG~~~~~~---~~~~~-~~~~~la~~~g~~Vv~Pd~~~~g~ 85 (275)
T TIGR02821 12 TQGFYRHKSETCGVPMTFGVFLPPQAA--AGPVPVLWYLSGLTCTHE---NFMIK-AGAQRFAAEHGLALVAPDTSPRGT 85 (275)
T ss_pred EEEEEEEeccccCCceEEEEEcCCCcc--CCCCCEEEEccCCCCCcc---HHHhh-hHHHHHHhhcCcEEEEeCCCCCcC
Confidence 3355555554 4577889999998642 256899999999876532 23111 1123444567999999997 665
Q ss_pred CCCchh--hH---------HHHhhccC-C-CchHHHHHHHHHHHHc-CCCCCCceEEEEechhHHHHHHHHhhCCCeeEE
Q 008873 374 ARRGLK--FE---------ASIKHNCG-R-IDAEDQLTGAEWLIKQ-GLAKVGHIGLYGWSYGGYLSAITLARFPDVFQC 439 (550)
Q Consensus 374 g~~~~~--~~---------~~~~~~~~-~-~~~~D~~~~~~~l~~~-~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~ 439 (550)
+.++.. |. ......+. . .....+.+.+..++++ ..+|.++++|+|+||||++++.++.++|++|++
T Consensus 86 ~~~~~~~~w~~g~~~~~~~d~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~G~S~GG~~a~~~a~~~p~~~~~ 165 (275)
T TIGR02821 86 GIAGEDDAWDFGKGAGFYVDATEEPWSQHYRMYSYIVQELPALVAAQFPLDGERQGITGHSMGGHGALVIALKNPDRFKS 165 (275)
T ss_pred CCCCCcccccccCCccccccCCcCcccccchHHHHHHHHHHHHHHhhCCCCCCceEEEEEChhHHHHHHHHHhCcccceE
Confidence 533311 10 00000000 0 1122333444444443 457889999999999999999999999999999
Q ss_pred EEEcCCcCCccccc--chhhhhccCCCCCCccccccCChhhhhhc--CCCcEEEEecCCCCCCCh-HHHHHHHHHHHHcC
Q 008873 440 AVSGAPVTSWDGYD--TFYTEKYMGLPSEDPVGYEYSSVMHHVHK--MKGKLLLVHGMIDENVHF-RHTARLINALVAAR 514 (550)
Q Consensus 440 ~v~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~~~~~--i~~P~lii~G~~D~~v~~-~~~~~~~~~l~~~~ 514 (550)
+++.+|+.+..... ......+++.+.. .+...++...+.+ ...|+++.||+.|..++. .++..+.++|++++
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~~~~~~~~~~~~~~~plli~~G~~D~~v~~~~~~~~~~~~l~~~g 242 (275)
T TIGR02821 166 VSAFAPIVAPSRCPWGQKAFSAYLGADEA---AWRSYDASLLVADGGRHSTILIDQGTADQFLDEQLRPDAFEQACRAAG 242 (275)
T ss_pred EEEECCccCcccCcchHHHHHHHhccccc---chhhcchHHHHhhcccCCCeeEeecCCCcccCccccHHHHHHHHHHcC
Confidence 99999987754321 1122344444322 2334455554443 457999999999999999 68899999999999
Q ss_pred CCeEEEEcCCCCCcCCCCCcHHHHHHHHHHHHHHhC
Q 008873 515 KPYEILIFPDERHMPRRHRDRIYMEERIWEFIERTL 550 (550)
Q Consensus 515 ~~~~~~~~p~~~H~~~~~~~~~~~~~~~~~fl~~~l 550 (550)
+++++.++|+++|++.. ....+...++|+.+++
T Consensus 243 ~~v~~~~~~g~~H~f~~---~~~~~~~~~~~~~~~~ 275 (275)
T TIGR02821 243 QALTLRRQAGYDHSYYF---IASFIADHLRHHAERL 275 (275)
T ss_pred CCeEEEEeCCCCccchh---HHHhHHHHHHHHHhhC
Confidence 99999999999999844 4556788889988765
No 16
>PHA02857 monoglyceride lipase; Provisional
Probab=99.89 E-value=1.5e-21 Score=185.86 Aligned_cols=226 Identities=17% Similarity=0.177 Sum_probs=155.8
Q ss_pred EcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCchhhHHH
Q 008873 304 QANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEAS 383 (550)
Q Consensus 304 ~~~~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~~~~~~ 383 (550)
...||..+.+.+|.|.. .+.|+|+++||.+.+.. .|...++.|+++||.|+++|+||+|.+......
T Consensus 6 ~~~~g~~l~~~~~~~~~-----~~~~~v~llHG~~~~~~-------~~~~~~~~l~~~g~~via~D~~G~G~S~~~~~~- 72 (276)
T PHA02857 6 FNLDNDYIYCKYWKPIT-----YPKALVFISHGAGEHSG-------RYEELAENISSLGILVFSHDHIGHGRSNGEKMM- 72 (276)
T ss_pred ecCCCCEEEEEeccCCC-----CCCEEEEEeCCCccccc-------hHHHHHHHHHhCCCEEEEccCCCCCCCCCccCC-
Confidence 34599999999998853 34589999999765533 445568889999999999999999977532110
Q ss_pred HhhccCCCchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCccccc--c----hhh
Q 008873 384 IKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYD--T----FYT 457 (550)
Q Consensus 384 ~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~~~~--~----~~~ 457 (550)
...+ ...++|+...++++.+.. ...+++++|||+||.+++.++.++|++++++|+.+|........ . ...
T Consensus 73 -~~~~-~~~~~d~~~~l~~~~~~~--~~~~~~lvG~S~GG~ia~~~a~~~p~~i~~lil~~p~~~~~~~~~~~~~~~~~~ 148 (276)
T PHA02857 73 -IDDF-GVYVRDVVQHVVTIKSTY--PGVPVFLLGHSMGATISILAAYKNPNLFTAMILMSPLVNAEAVPRLNLLAAKLM 148 (276)
T ss_pred -cCCH-HHHHHHHHHHHHHHHhhC--CCCCEEEEEcCchHHHHHHHHHhCccccceEEEeccccccccccHHHHHHHHHH
Confidence 0011 012567777777765542 34679999999999999999999999999999999875432100 0 000
Q ss_pred hhcc------------------------CCCCCCc----ccc-c-----cCChhhhhhcCCCcEEEEecCCCCCCChHHH
Q 008873 458 EKYM------------------------GLPSEDP----VGY-E-----YSSVMHHVHKMKGKLLLVHGMIDENVHFRHT 503 (550)
Q Consensus 458 ~~~~------------------------g~~~~~~----~~~-~-----~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~ 503 (550)
..+. ..+.... ..+ . .......+.++++|+|+++|++|..+|+..+
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~Pvliv~G~~D~i~~~~~~ 228 (276)
T PHA02857 149 GIFYPNKIVGKLCPESVSRDMDEVYKYQYDPLVNHEKIKAGFASQVLKATNKVRKIIPKIKTPILILQGTNNEISDVSGA 228 (276)
T ss_pred HHhCCCCccCCCCHhhccCCHHHHHHHhcCCCccCCCccHHHHHHHHHHHHHHHHhcccCCCCEEEEecCCCCcCChHHH
Confidence 0000 0000000 000 0 0001224567889999999999999999999
Q ss_pred HHHHHHHHHcCCCeEEEEcCCCCCcCCCC--CcHHHHHHHHHHHHHHh
Q 008873 504 ARLINALVAARKPYEILIFPDERHMPRRH--RDRIYMEERIWEFIERT 549 (550)
Q Consensus 504 ~~~~~~l~~~~~~~~~~~~p~~~H~~~~~--~~~~~~~~~~~~fl~~~ 549 (550)
.++.+.+. .++++.++++++|.+... +.++++++.+++||+++
T Consensus 229 ~~l~~~~~---~~~~~~~~~~~gH~~~~e~~~~~~~~~~~~~~~l~~~ 273 (276)
T PHA02857 229 YYFMQHAN---CNREIKIYEGAKHHLHKETDEVKKSVMKEIETWIFNR 273 (276)
T ss_pred HHHHHHcc---CCceEEEeCCCcccccCCchhHHHHHHHHHHHHHHHh
Confidence 99988762 257899999999998644 44788999999999875
No 17
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.88 E-value=7e-21 Score=188.67 Aligned_cols=209 Identities=8% Similarity=0.067 Sum_probs=155.5
Q ss_pred eEEEcCCCCe-EEEEEEeCCCCCeEEEeecCCCCCCCCCcccccCCCCCCCCCeEEEEEEECCCCceEEEEcccCCCCCC
Q 008873 6 GYWWSLDSKF-IAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQN 84 (550)
Q Consensus 6 ~~~wSPdg~~-lay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~ 84 (550)
...|||||++ ++|++..... .+||++|+++|+.++++.
T Consensus 192 ~p~wSpDG~~~i~y~s~~~~~---------------------------------~~Iyv~dl~tg~~~~lt~-------- 230 (419)
T PRK04043 192 FPKWANKEQTAFYYTSYGERK---------------------------------PTLYKYNLYTGKKEKIAS-------- 230 (419)
T ss_pred eEEECCCCCcEEEEEEccCCC---------------------------------CEEEEEECCCCcEEEEec--------
Confidence 5779999997 6666554221 368999999999998853
Q ss_pred CCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCceeeccCccccCCCCCccCCCc--EEEEEc
Q 008873 85 YDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYSGG--FIWASE 162 (550)
Q Consensus 85 ~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~s~ 162 (550)
.......+.|||||+.+++...+. ...+||++++++|+.++||.... .+..+ .|++|+ ++|.++
T Consensus 231 -~~g~~~~~~~SPDG~~la~~~~~~-g~~~Iy~~dl~~g~~~~LT~~~~---~d~~p---------~~SPDG~~I~F~Sd 296 (419)
T PRK04043 231 -SQGMLVVSDVSKDGSKLLLTMAPK-GQPDIYLYDTNTKTLTQITNYPG---IDVNG---------NFVEDDKRIVFVSD 296 (419)
T ss_pred -CCCcEEeeEECCCCCEEEEEEccC-CCcEEEEEECCCCcEEEcccCCC---ccCcc---------EECCCCCEEEEEEC
Confidence 244556789999999888887664 45789999999999999986432 11111 345544 999999
Q ss_pred cCCccEEEEEeCCCceeeccccc-CeEEEEEEeEeecCCEEEEEEcCCCC----ceeEEEEEEeCCCCCCCCCCCeeeCC
Q 008873 163 KTGFRHLYLHDINGTCLGPITEG-DWMVEQIVGVNEASGQVYFTGTLDGP----LESHLYCAKLYPDWNHTLEAPVKLTN 237 (550)
Q Consensus 163 ~~g~~~l~~~~~~~~~~~~lT~~-~~~~~~~~~~s~dg~~l~f~~~~~~~----~~~~l~~v~~~~~g~~~~~~~~~lt~ 237 (550)
+.|..+||++++++++.++||.. .+. . .|||||+.|+|++...+. ...+||.+++ +++ ..++||.
T Consensus 297 r~g~~~Iy~~dl~~g~~~rlt~~g~~~---~-~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~--~~g----~~~~LT~ 366 (419)
T PRK04043 297 RLGYPNIFMKKLNSGSVEQVVFHGKNN---S-SVSTYKNYIVYSSRETNNEFGKNTFNLYLIST--NSD----YIRRLTA 366 (419)
T ss_pred CCCCceEEEEECCCCCeEeCccCCCcC---c-eECCCCCEEEEEEcCCCcccCCCCcEEEEEEC--CCC----CeEECCC
Confidence 99999999999999999888863 332 2 599999999999875421 2368999998 444 5788887
Q ss_pred CCceEEEEECCCCCEEEEeecCCCCCCEEEEEEcCCCceeEecc
Q 008873 238 GKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLY 281 (550)
Q Consensus 238 ~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~~~~~l~ 281 (550)
......++|||||+.++|+... ..-..|+++++ +|...+++.
T Consensus 367 ~~~~~~p~~SPDG~~I~f~~~~-~~~~~L~~~~l-~g~~~~~l~ 408 (419)
T PRK04043 367 NGVNQFPRFSSDGGSIMFIKYL-GNQSALGIIRL-NYNKSFLFP 408 (419)
T ss_pred CCCcCCeEECCCCCEEEEEEcc-CCcEEEEEEec-CCCeeEEee
Confidence 6444557999999999998665 44457999998 555444453
No 18
>PLN02385 hydrolase; alpha/beta fold family protein
Probab=99.88 E-value=2.5e-21 Score=190.28 Aligned_cols=236 Identities=14% Similarity=0.112 Sum_probs=157.8
Q ss_pred eEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCch
Q 008873 299 DIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGL 378 (550)
Q Consensus 299 ~~~~~~~~~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~ 378 (550)
++..+...+|.++.+..+.|.+. ++.|+||++||.+.... . .|...+..|+++||.|+++|+||+|.+..
T Consensus 62 ~~~~~~~~~g~~l~~~~~~p~~~----~~~~~iv~lHG~~~~~~---~---~~~~~~~~l~~~g~~v~~~D~~G~G~S~~ 131 (349)
T PLN02385 62 EESYEVNSRGVEIFSKSWLPENS----RPKAAVCFCHGYGDTCT---F---FFEGIARKIASSGYGVFAMDYPGFGLSEG 131 (349)
T ss_pred eeeeEEcCCCCEEEEEEEecCCC----CCCeEEEEECCCCCccc---h---HHHHHHHHHHhCCCEEEEecCCCCCCCCC
Confidence 34455567899999999988642 34589999999655421 1 12345678888999999999999997753
Q ss_pred hhHH-HHhhccCCCchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCcccc--cc-
Q 008873 379 KFEA-SIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGY--DT- 454 (550)
Q Consensus 379 ~~~~-~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~~~--~~- 454 (550)
.... ....+ ..+|+.+.++.+..+...+..+++|+||||||.+++.++.++|++++++|+.+|....... ..
T Consensus 132 ~~~~~~~~~~----~~~dv~~~l~~l~~~~~~~~~~~~LvGhSmGG~val~~a~~~p~~v~glVLi~p~~~~~~~~~~~~ 207 (349)
T PLN02385 132 LHGYIPSFDD----LVDDVIEHYSKIKGNPEFRGLPSFLFGQSMGGAVALKVHLKQPNAWDGAILVAPMCKIADDVVPPP 207 (349)
T ss_pred CCCCcCCHHH----HHHHHHHHHHHHHhccccCCCCEEEEEeccchHHHHHHHHhCcchhhheeEecccccccccccCch
Confidence 2100 00111 1567777777776554445568999999999999999999999999999999886432100 00
Q ss_pred h-----------------h-----hhhccCCCC------CCcccccc--------------CChhhhhhcCCCcEEEEec
Q 008873 455 F-----------------Y-----TEKYMGLPS------EDPVGYEY--------------SSVMHHVHKMKGKLLLVHG 492 (550)
Q Consensus 455 ~-----------------~-----~~~~~g~~~------~~~~~~~~--------------~~~~~~~~~i~~P~lii~G 492 (550)
. + ...+...+. .+...+.. ......+.++++|+|++||
T Consensus 208 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~i~~P~Lii~G 287 (349)
T PLN02385 208 LVLQILILLANLLPKAKLVPQKDLAELAFRDLKKRKMAEYNVIAYKDKPRLRTAVELLRTTQEIEMQLEEVSLPLLILHG 287 (349)
T ss_pred HHHHHHHHHHHHCCCceecCCCccccccccCHHHHHHhhcCcceeCCCcchHHHHHHHHHHHHHHHhcccCCCCEEEEEe
Confidence 0 0 000000000 00000000 0112235678899999999
Q ss_pred CCCCCCChHHHHHHHHHHHHcCCCeEEEEcCCCCCcCCCC--Cc-HHHHHHHHHHHHHHhC
Q 008873 493 MIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRH--RD-RIYMEERIWEFIERTL 550 (550)
Q Consensus 493 ~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p~~~H~~~~~--~~-~~~~~~~~~~fl~~~l 550 (550)
++|..+|+..+..+++++.. .+.++.++|+++|.+... +. ...+++.+++||++++
T Consensus 288 ~~D~vv~~~~~~~l~~~~~~--~~~~l~~i~~~gH~l~~e~p~~~~~~v~~~i~~wL~~~~ 346 (349)
T PLN02385 288 EADKVTDPSVSKFLYEKASS--SDKKLKLYEDAYHSILEGEPDEMIFQVLDDIISWLDSHS 346 (349)
T ss_pred CCCCccChHHHHHHHHHcCC--CCceEEEeCCCeeecccCCChhhHHHHHHHHHHHHHHhc
Confidence 99999999999999887632 356889999999997432 22 4458899999999874
No 19
>KOG1455 consensus Lysophospholipase [Lipid transport and metabolism]
Probab=99.88 E-value=1.4e-21 Score=174.57 Aligned_cols=239 Identities=15% Similarity=0.172 Sum_probs=171.0
Q ss_pred CCeEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCC
Q 008873 297 PPDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARR 376 (550)
Q Consensus 297 ~~~~~~~~~~~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~ 376 (550)
....-.++..+|..+....+.|.... ++..+|+++||...... ..+...+..|++.||.|+++|++|+|.+
T Consensus 26 ~~~~~~~~n~rG~~lft~~W~p~~~~---~pr~lv~~~HG~g~~~s------~~~~~~a~~l~~~g~~v~a~D~~GhG~S 96 (313)
T KOG1455|consen 26 TYSESFFTNPRGAKLFTQSWLPLSGT---EPRGLVFLCHGYGEHSS------WRYQSTAKRLAKSGFAVYAIDYEGHGRS 96 (313)
T ss_pred ceeeeeEEcCCCCEeEEEecccCCCC---CCceEEEEEcCCcccch------hhHHHHHHHHHhCCCeEEEeeccCCCcC
Confidence 34555677889999999999996632 56679999999655421 1445568899999999999999999987
Q ss_pred chhhHHHHhhccCCCchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCccccc---
Q 008873 377 GLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYD--- 453 (550)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~~~~--- 453 (550)
.... ....++ ..-++|+...++.+..+..-..-..+++|+||||.+++.++.++|+.+.++|..+|..-...-.
T Consensus 97 dGl~--~yi~~~-d~~v~D~~~~~~~i~~~~e~~~lp~FL~GeSMGGAV~Ll~~~k~p~~w~G~ilvaPmc~i~~~~kp~ 173 (313)
T KOG1455|consen 97 DGLH--AYVPSF-DLVVDDVISFFDSIKEREENKGLPRFLFGESMGGAVALLIALKDPNFWDGAILVAPMCKISEDTKPH 173 (313)
T ss_pred CCCc--ccCCcH-HHHHHHHHHHHHHHhhccccCCCCeeeeecCcchHHHHHHHhhCCcccccceeeecccccCCccCCC
Confidence 5321 111111 1236788888888777754445678999999999999999999999999999999975432100
Q ss_pred ----------chhhhhccCCC------------------CCCcccccc--------------CChhhhhhcCCCcEEEEe
Q 008873 454 ----------TFYTEKYMGLP------------------SEDPVGYEY--------------SSVMHHVHKMKGKLLLVH 491 (550)
Q Consensus 454 ----------~~~~~~~~g~~------------------~~~~~~~~~--------------~~~~~~~~~i~~P~lii~ 491 (550)
.....++.-.| ..|+..|.. ......+.++..|+||+|
T Consensus 174 p~v~~~l~~l~~liP~wk~vp~~d~~~~~~kdp~~r~~~~~npl~y~g~pRl~T~~ElLr~~~~le~~l~~vtvPflilH 253 (313)
T KOG1455|consen 174 PPVISILTLLSKLIPTWKIVPTKDIIDVAFKDPEKRKILRSDPLCYTGKPRLKTAYELLRVTADLEKNLNEVTVPFLILH 253 (313)
T ss_pred cHHHHHHHHHHHhCCceeecCCccccccccCCHHHHHHhhcCCceecCCccHHHHHHHHHHHHHHHHhcccccccEEEEe
Confidence 00000110001 011111111 112335677889999999
Q ss_pred cCCCCCCChHHHHHHHHHHHHcCCCeEEEEcCCCCCcCC---CCCcHHHHHHHHHHHHHHh
Q 008873 492 GMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPR---RHRDRIYMEERIWEFIERT 549 (550)
Q Consensus 492 G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p~~~H~~~---~~~~~~~~~~~~~~fl~~~ 549 (550)
|+.|.++.+..+.++++.... .+.++.+|||.-|.+. ..++...++..|++||+++
T Consensus 254 G~dD~VTDp~~Sk~Lye~A~S--~DKTlKlYpGm~H~Ll~gE~~en~e~Vf~DI~~Wl~~r 312 (313)
T KOG1455|consen 254 GTDDKVTDPKVSKELYEKASS--SDKTLKLYPGMWHSLLSGEPDENVEIVFGDIISWLDER 312 (313)
T ss_pred cCCCcccCcHHHHHHHHhccC--CCCceeccccHHHHhhcCCCchhHHHHHHHHHHHHHhc
Confidence 999999999999999997643 4678999999999975 5788899999999999876
No 20
>PRK10749 lysophospholipase L2; Provisional
Probab=99.88 E-value=3.4e-21 Score=187.50 Aligned_cols=240 Identities=18% Similarity=0.159 Sum_probs=159.8
Q ss_pred CCCCeEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCC
Q 008873 295 LEPPDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTA 374 (550)
Q Consensus 295 ~~~~~~~~~~~~~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g 374 (550)
+...+...+...+|..+++..+.|.. +.|+||++||...+.. .|...+..++++||.|+++|+||+|
T Consensus 27 ~~~~~~~~~~~~~g~~l~~~~~~~~~------~~~~vll~HG~~~~~~-------~y~~~~~~l~~~g~~v~~~D~~G~G 93 (330)
T PRK10749 27 WRQREEAEFTGVDDIPIRFVRFRAPH------HDRVVVICPGRIESYV-------KYAELAYDLFHLGYDVLIIDHRGQG 93 (330)
T ss_pred HhhccceEEEcCCCCEEEEEEccCCC------CCcEEEEECCccchHH-------HHHHHHHHHHHCCCeEEEEcCCCCC
Confidence 35567778888899999999887642 2368899999654321 2344566788999999999999999
Q ss_pred CCchhhHHHHhhccC--CCchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCcccc
Q 008873 375 RRGLKFEASIKHNCG--RIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGY 452 (550)
Q Consensus 375 ~~~~~~~~~~~~~~~--~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~~~ 452 (550)
.+............. ..-.+|+.++++.+.+. .+..++.++||||||.+++.++.++|+.++++|+.+|.......
T Consensus 94 ~S~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~--~~~~~~~l~GhSmGG~ia~~~a~~~p~~v~~lvl~~p~~~~~~~ 171 (330)
T PRK10749 94 RSGRLLDDPHRGHVERFNDYVDDLAAFWQQEIQP--GPYRKRYALAHSMGGAILTLFLQRHPGVFDAIALCAPMFGIVLP 171 (330)
T ss_pred CCCCCCCCCCcCccccHHHHHHHHHHHHHHHHhc--CCCCCeEEEEEcHHHHHHHHHHHhCCCCcceEEEECchhccCCC
Confidence 886432110000000 01145556666555433 24578999999999999999999999999999999886432100
Q ss_pred -cch-------hh--------------hhccCCCC------CCcc-------ccccC---------------------Ch
Q 008873 453 -DTF-------YT--------------EKYMGLPS------EDPV-------GYEYS---------------------SV 476 (550)
Q Consensus 453 -~~~-------~~--------------~~~~g~~~------~~~~-------~~~~~---------------------~~ 476 (550)
... +. ..+...+. ...+ .+... ..
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (330)
T PRK10749 172 LPSWMARRILNWAEGHPRIRDGYAIGTGRWRPLPFAINVLTHSRERYRRNLRFYADDPELRVGGPTYHWVRESILAGEQV 251 (330)
T ss_pred CCcHHHHHHHHHHHHhcCCCCcCCCCCCCCCCCCcCCCCCCCCHHHHHHHHHHHHhCCCcccCCCcHHHHHHHHHHHHHH
Confidence 000 00 00000000 0000 00000 01
Q ss_pred hhhhhcCCCcEEEEecCCCCCCChHHHHHHHHHHHHcC---CCeEEEEcCCCCCcCCCCCc--HHHHHHHHHHHHHHh
Q 008873 477 MHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAAR---KPYEILIFPDERHMPRRHRD--RIYMEERIWEFIERT 549 (550)
Q Consensus 477 ~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~---~~~~~~~~p~~~H~~~~~~~--~~~~~~~~~~fl~~~ 549 (550)
...+.++++|+|++||++|..+++..+..+++++.+.+ .++++++||+++|.+..... +..+++.+++||+++
T Consensus 252 ~~~~~~i~~P~Lii~G~~D~vv~~~~~~~~~~~l~~~~~~~~~~~l~~~~gagH~~~~E~~~~r~~v~~~i~~fl~~~ 329 (330)
T PRK10749 252 LAGAGDITTPLLLLQAEEERVVDNRMHDRFCEARTAAGHPCEGGKPLVIKGAYHEILFEKDAMRSVALNAIVDFFNRH 329 (330)
T ss_pred HhhccCCCCCEEEEEeCCCeeeCHHHHHHHHHHHhhcCCCCCCceEEEeCCCcchhhhCCcHHHHHHHHHHHHHHhhc
Confidence 23356788999999999999999999999999887765 35689999999999754333 788999999999875
No 21
>PF01738 DLH: Dienelactone hydrolase family; InterPro: IPR002925 Dienelactone hydrolases play a crucial role in chlorocatechol degradation via the modified ortho cleavage pathway. Enzymes induced in 4-fluorobenzoate-utilizing bacteria have been classified into three groups on the basis of their specificity towards cis- and trans-dienelactone []. Some proteins contain repeated small fragments of this domain (for example rat kan-1 protein).; GO: 0016787 hydrolase activity; PDB: 1GGV_A 1ZIY_A 1ZI6_A 1ZIC_A 1ZJ5_A 1ZI8_A 1ZJ4_A 1ZI9_A 1ZIX_A 3F67_A.
Probab=99.88 E-value=9.8e-22 Score=179.63 Aligned_cols=204 Identities=20% Similarity=0.196 Sum_probs=143.6
Q ss_pred EEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCC---CchhhHHHHhhc
Q 008873 311 LYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTAR---RGLKFEASIKHN 387 (550)
Q Consensus 311 l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~---~~~~~~~~~~~~ 387 (550)
+.+++..|.+. ++.|.||++|+..+-. .....+++.|+++||.|++||+.+... ............
T Consensus 1 ~~ay~~~P~~~----~~~~~Vvv~~d~~G~~-------~~~~~~ad~lA~~Gy~v~~pD~f~~~~~~~~~~~~~~~~~~~ 69 (218)
T PF01738_consen 1 IDAYVARPEGG----GPRPAVVVIHDIFGLN-------PNIRDLADRLAEEGYVVLAPDLFGGRGAPPSDPEEAFAAMRE 69 (218)
T ss_dssp EEEEEEEETTS----SSEEEEEEE-BTTBS--------HHHHHHHHHHHHTT-EEEEE-CCCCTS--CCCHHCHHHHHHH
T ss_pred CeEEEEeCCCC----CCCCEEEEEcCCCCCc-------hHHHHHHHHHHhcCCCEEecccccCCCCCccchhhHHHHHHH
Confidence 46788999864 5789999999954432 122345888999999999999765443 111111111110
Q ss_pred c----CCCchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCcccccchhhhhccCC
Q 008873 388 C----GRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTFYTEKYMGL 463 (550)
Q Consensus 388 ~----~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~ 463 (550)
+ ......|+.+++++|.+++.++.+||+++|+|+||.+++.++.+. +.++++++..|...
T Consensus 70 ~~~~~~~~~~~~~~aa~~~l~~~~~~~~~kig~vGfc~GG~~a~~~a~~~-~~~~a~v~~yg~~~--------------- 133 (218)
T PF01738_consen 70 LFAPRPEQVAADLQAAVDYLRAQPEVDPGKIGVVGFCWGGKLALLLAARD-PRVDAAVSFYGGSP--------------- 133 (218)
T ss_dssp CHHHSHHHHHHHHHHHHHHHHCTTTCEEEEEEEEEETHHHHHHHHHHCCT-TTSSEEEEES-SSS---------------
T ss_pred HHhhhHHHHHHHHHHHHHHHHhccccCCCcEEEEEEecchHHhhhhhhhc-cccceEEEEcCCCC---------------
Confidence 0 112357888999999999888999999999999999999999876 67899998877100
Q ss_pred CCCCccccccCChhhhhhcCCCcEEEEecCCCCCCChHHHHHHHHHHHHcCCCeEEEEcCCCCCcCCCC-------CcHH
Q 008873 464 PSEDPVGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRH-------RDRI 536 (550)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p~~~H~~~~~-------~~~~ 536 (550)
...+.....++++|+|+++|++|+.++.+...++.++|++++.++++++||+++|+|... ....
T Consensus 134 ---------~~~~~~~~~~~~~P~l~~~g~~D~~~~~~~~~~~~~~l~~~~~~~~~~~y~ga~HgF~~~~~~~~~~~aa~ 204 (218)
T PF01738_consen 134 ---------PPPPLEDAPKIKAPVLILFGENDPFFPPEEVEALEEALKAAGVDVEVHVYPGAGHGFANPSRPPYDPAAAE 204 (218)
T ss_dssp ---------GGGHHHHGGG--S-EEEEEETT-TTS-HHHHHHHHHHHHCTTTTEEEEEETT--TTTTSTTSTT--HHHHH
T ss_pred ---------CCcchhhhcccCCCEeecCccCCCCCChHHHHHHHHHHHhcCCcEEEEECCCCcccccCCCCcccCHHHHH
Confidence 011345677889999999999999999999999999999999999999999999998542 3457
Q ss_pred HHHHHHHHHHHHhC
Q 008873 537 YMEERIWEFIERTL 550 (550)
Q Consensus 537 ~~~~~~~~fl~~~l 550 (550)
+.++++++||++||
T Consensus 205 ~a~~~~~~ff~~~L 218 (218)
T PF01738_consen 205 DAWQRTLAFFKRHL 218 (218)
T ss_dssp HHHHHHHHHHCC--
T ss_pred HHHHHHHHHHHhcC
Confidence 78999999999987
No 22
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.87 E-value=1.8e-20 Score=189.37 Aligned_cols=212 Identities=14% Similarity=0.122 Sum_probs=156.1
Q ss_pred ceEEEcCCCCeEEEEEEeCCCCCeEEEeecCCCCCCCCCcccccCCCCCCCCCeEEEEEEECCCCceEEEEcccCCCCCC
Q 008873 5 TGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQN 84 (550)
Q Consensus 5 ~~~~wSPdg~~lay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~ 84 (550)
....|||||++|||++...+. ..||++|+++++.++++.
T Consensus 205 ~~p~wSpDG~~lay~s~~~g~---------------------------------~~i~~~dl~~g~~~~l~~-------- 243 (435)
T PRK05137 205 LTPRFSPNRQEITYMSYANGR---------------------------------PRVYLLDLETGQRELVGN-------- 243 (435)
T ss_pred EeeEECCCCCEEEEEEecCCC---------------------------------CEEEEEECCCCcEEEeec--------
Confidence 467899999999998754321 368999999998887743
Q ss_pred CCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCceeeccCccccCCCCCccCCCc--EEEEEc
Q 008873 85 YDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYSGG--FIWASE 162 (550)
Q Consensus 85 ~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~s~ 162 (550)
.......++|||||+.|++...+. +..+||++++++++.++|+..... +..+ .|++|+ ++|.++
T Consensus 244 -~~g~~~~~~~SPDG~~la~~~~~~-g~~~Iy~~d~~~~~~~~Lt~~~~~---~~~~---------~~spDG~~i~f~s~ 309 (435)
T PRK05137 244 -FPGMTFAPRFSPDGRKVVMSLSQG-GNTDIYTMDLRSGTTTRLTDSPAI---DTSP---------SYSPDGSQIVFESD 309 (435)
T ss_pred -CCCcccCcEECCCCCEEEEEEecC-CCceEEEEECCCCceEEccCCCCc---cCce---------eEcCCCCEEEEEEC
Confidence 233456789999999888876554 346899999999999988764321 1111 345554 888898
Q ss_pred cCCccEEEEEeCCCceeecccccCeEEEEEEeEeecCCEEEEEEcCCCCceeEEEEEEeCCCCCCCCCCCeeeCCCCceE
Q 008873 163 KTGFRHLYLHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTNGKGKH 242 (550)
Q Consensus 163 ~~g~~~l~~~~~~~~~~~~lT~~~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~~v~~~~~g~~~~~~~~~lt~~~~~~ 242 (550)
+.|..+||++++++++.++||.+......+ .|||||+.|+|.....+ ..+|+.+++ +++ ..+.++......
T Consensus 310 ~~g~~~Iy~~d~~g~~~~~lt~~~~~~~~~-~~SpdG~~ia~~~~~~~--~~~i~~~d~--~~~----~~~~lt~~~~~~ 380 (435)
T PRK05137 310 RSGSPQLYVMNADGSNPRRISFGGGRYSTP-VWSPRGDLIAFTKQGGG--QFSIGVMKP--DGS----GERILTSGFLVE 380 (435)
T ss_pred CCCCCeEEEEECCCCCeEEeecCCCcccCe-EECCCCCEEEEEEcCCC--ceEEEEEEC--CCC----ceEeccCCCCCC
Confidence 888899999999999899999764334444 49999999999986544 368898887 443 445666544456
Q ss_pred EEEECCCCCEEEEeecCCCCC--CEEEEEEcCCCceeEecc
Q 008873 243 VAVLDHNMRNFVDFHDSLDSP--PRILLCSLQDGSLVLPLY 281 (550)
Q Consensus 243 ~~~~s~dg~~l~~~~s~~~~p--~~l~~~~~~~g~~~~~l~ 281 (550)
.++|||||+.|+|+....... ..||++++.+++ .+.+.
T Consensus 381 ~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~-~~~l~ 420 (435)
T PRK05137 381 GPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRN-EREVP 420 (435)
T ss_pred CCeECCCCCEEEEEEccCCCCCcceEEEEECCCCc-eEEcc
Confidence 679999999999987765443 689999985544 45554
No 23
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.85 E-value=1.1e-19 Score=182.38 Aligned_cols=212 Identities=18% Similarity=0.173 Sum_probs=153.6
Q ss_pred ceEEEcCCCCeEEEEEEeCCCCCeEEEeecCCCCCCCCCcccccCCCCCCCCCeEEEEEEECCCCceEEEEcccCCCCCC
Q 008873 5 TGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQN 84 (550)
Q Consensus 5 ~~~~wSPdg~~lay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~ 84 (550)
....|||||++|||++.... ...|+++|+++|+.++++.
T Consensus 202 ~~p~wSPDG~~la~~s~~~g---------------------------------~~~i~i~dl~~G~~~~l~~-------- 240 (429)
T PRK03629 202 MSPAWSPDGSKLAYVTFESG---------------------------------RSALVIQTLANGAVRQVAS-------- 240 (429)
T ss_pred eeeEEcCCCCEEEEEEecCC---------------------------------CcEEEEEECCCCCeEEccC--------
Confidence 46889999999999875321 1468999999998887742
Q ss_pred CCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCceeeccCccccCCCCCccCCCc--EEEEEc
Q 008873 85 YDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYSGG--FIWASE 162 (550)
Q Consensus 85 ~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~s~ 162 (550)
.......+.|||||+.|++...+. +..+||++++++|+.++|+..... .. .+ .|++|+ ++|.++
T Consensus 241 -~~~~~~~~~~SPDG~~La~~~~~~-g~~~I~~~d~~tg~~~~lt~~~~~---~~----~~-----~wSPDG~~I~f~s~ 306 (429)
T PRK03629 241 -FPRHNGAPAFSPDGSKLAFALSKT-GSLNLYVMDLASGQIRQVTDGRSN---NT----EP-----TWFPDSQNLAYTSD 306 (429)
T ss_pred -CCCCcCCeEECCCCCEEEEEEcCC-CCcEEEEEECCCCCEEEccCCCCC---cC----ce-----EECCCCCEEEEEeC
Confidence 123345689999999998876554 335799999999999888754211 11 11 355554 888999
Q ss_pred cCCccEEEEEeCCCceeecccccCeEEEEEEeEeecCCEEEEEEcCCCCceeEEEEEEeCCCCCCCCCCCeeeCCCCceE
Q 008873 163 KTGFRHLYLHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTNGKGKH 242 (550)
Q Consensus 163 ~~g~~~l~~~~~~~~~~~~lT~~~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~~v~~~~~g~~~~~~~~~lt~~~~~~ 242 (550)
+.|..+||++++++++.++||........+ .|||||+.|+|.+...+. .+||.+++ .++ ..+.|+......
T Consensus 307 ~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~-~~SpDG~~Ia~~~~~~g~--~~I~~~dl--~~g----~~~~Lt~~~~~~ 377 (429)
T PRK03629 307 QAGRPQVYKVNINGGAPQRITWEGSQNQDA-DVSSDGKFMVMVSSNGGQ--QHIAKQDL--ATG----GVQVLTDTFLDE 377 (429)
T ss_pred CCCCceEEEEECCCCCeEEeecCCCCccCE-EECCCCCEEEEEEccCCC--ceEEEEEC--CCC----CeEEeCCCCCCC
Confidence 888899999999998888888643222333 599999999999876553 68999998 333 567777543345
Q ss_pred EEEECCCCCEEEEeecCCCCCCEEEEEEcCCCceeEeccC
Q 008873 243 VAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLYE 282 (550)
Q Consensus 243 ~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~~~~~l~~ 282 (550)
++.|||||+.|++...... ...++++++ +|+..+.|..
T Consensus 378 ~p~~SpDG~~i~~~s~~~~-~~~l~~~~~-~G~~~~~l~~ 415 (429)
T PRK03629 378 TPSIAPNGTMVIYSSSQGM-GSVLNLVST-DGRFKARLPA 415 (429)
T ss_pred CceECCCCCEEEEEEcCCC-ceEEEEEEC-CCCCeEECcc
Confidence 6789999999998876533 357898888 5655566643
No 24
>COG1647 Esterase/lipase [General function prediction only]
Probab=99.85 E-value=1.4e-20 Score=159.59 Aligned_cols=202 Identities=20% Similarity=0.254 Sum_probs=154.4
Q ss_pred eEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCchhhHHHHhhccCCCchHHHHHHHHHHHHcCC
Q 008873 329 KTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGL 408 (550)
Q Consensus 329 P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~ 408 (550)
-.|+++||-.++.. ....+.++|.++||.|.+|.++|+|-....|......+| .+|+.++.++|.++++
T Consensus 16 ~AVLllHGFTGt~~-------Dvr~Lgr~L~e~GyTv~aP~ypGHG~~~e~fl~t~~~DW----~~~v~d~Y~~L~~~gy 84 (243)
T COG1647 16 RAVLLLHGFTGTPR-------DVRMLGRYLNENGYTVYAPRYPGHGTLPEDFLKTTPRDW----WEDVEDGYRDLKEAGY 84 (243)
T ss_pred EEEEEEeccCCCcH-------HHHHHHHHHHHCCceEecCCCCCCCCCHHHHhcCCHHHH----HHHHHHHHHHHHHcCC
Confidence 67888999665532 335578999999999999999999999999999888999 9999999999998875
Q ss_pred CCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCcccccch------hhh---hccCCCCCC-ccccccC----
Q 008873 409 AKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTF------YTE---KYMGLPSED-PVGYEYS---- 474 (550)
Q Consensus 409 ~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~~~~~~------~~~---~~~g~~~~~-~~~~~~~---- 474 (550)
+.|+++|.||||.+++.++.++| .++++..++.......... |.+ .+.+...+. .+.++..
T Consensus 85 ---~eI~v~GlSmGGv~alkla~~~p--~K~iv~m~a~~~~k~~~~iie~~l~y~~~~kk~e~k~~e~~~~e~~~~~~~~ 159 (243)
T COG1647 85 ---DEIAVVGLSMGGVFALKLAYHYP--PKKIVPMCAPVNVKSWRIIIEGLLEYFRNAKKYEGKDQEQIDKEMKSYKDTP 159 (243)
T ss_pred ---CeEEEEeecchhHHHHHHHhhCC--ccceeeecCCcccccchhhhHHHHHHHHHhhhccCCCHHHHHHHHHHhhcch
Confidence 68999999999999999999988 4666666654432211100 001 111111110 0111111
Q ss_pred ------------ChhhhhhcCCCcEEEEecCCCCCCChHHHHHHHHHHHHcCCCeEEEEcCCCCCcCCCCCcHHHHHHHH
Q 008873 475 ------------SVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERI 542 (550)
Q Consensus 475 ------------~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p~~~H~~~~~~~~~~~~~~~ 542 (550)
.....++.|..|+|+++|.+|+.||.+.+.-+++.+.. .+.++.+|.+.||.+.....++++.+.+
T Consensus 160 ~~~~~~~~~~i~~~~~~~~~I~~pt~vvq~~~D~mv~~~sA~~Iy~~v~s--~~KeL~~~e~SgHVIt~D~Erd~v~e~V 237 (243)
T COG1647 160 MTTTAQLKKLIKDARRSLDKIYSPTLVVQGRQDEMVPAESANFIYDHVES--DDKELKWLEGSGHVITLDKERDQVEEDV 237 (243)
T ss_pred HHHHHHHHHHHHHHHhhhhhcccchhheecccCCCCCHHHHHHHHHhccC--CcceeEEEccCCceeecchhHHHHHHHH
Confidence 12345677889999999999999999999999988743 4679999999999999989999999999
Q ss_pred HHHHHH
Q 008873 543 WEFIER 548 (550)
Q Consensus 543 ~~fl~~ 548 (550)
+.||+.
T Consensus 238 ~~FL~~ 243 (243)
T COG1647 238 ITFLEK 243 (243)
T ss_pred HHHhhC
Confidence 999973
No 25
>PLN02652 hydrolase; alpha/beta fold family protein
Probab=99.85 E-value=5.3e-20 Score=180.95 Aligned_cols=234 Identities=17% Similarity=0.166 Sum_probs=159.4
Q ss_pred CeEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCc
Q 008873 298 PDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRG 377 (550)
Q Consensus 298 ~~~~~~~~~~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~ 377 (550)
.....+...++..+.+..|.|... ++.|+||++||.+.... .|..++..|+++||.|+++|+||+|.+.
T Consensus 110 ~~~~~~~~~~~~~l~~~~~~p~~~----~~~~~Vl~lHG~~~~~~-------~~~~~a~~L~~~Gy~V~~~D~rGhG~S~ 178 (395)
T PLN02652 110 WATSLFYGARRNALFCRSWAPAAG----EMRGILIIIHGLNEHSG-------RYLHFAKQLTSCGFGVYAMDWIGHGGSD 178 (395)
T ss_pred EEEEEEECCCCCEEEEEEecCCCC----CCceEEEEECCchHHHH-------HHHHHHHHHHHCCCEEEEeCCCCCCCCC
Confidence 355667778888999999998642 34589999999765432 2445678899999999999999999875
Q ss_pred hhhHHHHhhccCCCchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhCCC---eeEEEEEcCCcCCcccccc
Q 008873 378 LKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPD---VFQCAVSGAPVTSWDGYDT 454 (550)
Q Consensus 378 ~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~---~~~~~v~~~~~~~~~~~~~ 454 (550)
...... .......+|+.++++++..+. +..++.|+||||||.+++.++. +|+ +++++|+.+|.........
T Consensus 179 ~~~~~~---~~~~~~~~Dl~~~l~~l~~~~--~~~~i~lvGhSmGG~ial~~a~-~p~~~~~v~glVL~sP~l~~~~~~~ 252 (395)
T PLN02652 179 GLHGYV---PSLDYVVEDTEAFLEKIRSEN--PGVPCFLFGHSTGGAVVLKAAS-YPSIEDKLEGIVLTSPALRVKPAHP 252 (395)
T ss_pred CCCCCC---cCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEECHHHHHHHHHHh-ccCcccccceEEEECcccccccchH
Confidence 431100 000112578888888887652 2347999999999999987765 554 7899999988754321100
Q ss_pred h-------hh---hhc--cC-----CC-CCCc----------cccccC--------------ChhhhhhcCCCcEEEEec
Q 008873 455 F-------YT---EKY--MG-----LP-SEDP----------VGYEYS--------------SVMHHVHKMKGKLLLVHG 492 (550)
Q Consensus 455 ~-------~~---~~~--~g-----~~-~~~~----------~~~~~~--------------~~~~~~~~i~~P~lii~G 492 (550)
. +. ..+ .. .+ ..++ ..+... .....+.++++|+|++||
T Consensus 253 ~~~~~~~l~~~~~p~~~~~~~~~~~~~~s~~~~~~~~~~~dp~~~~g~i~~~~~~~~~~~~~~l~~~L~~I~vPvLIi~G 332 (395)
T PLN02652 253 IVGAVAPIFSLVAPRFQFKGANKRGIPVSRDPAALLAKYSDPLVYTGPIRVRTGHEILRISSYLTRNFKSVTVPFMVLHG 332 (395)
T ss_pred HHHHHHHHHHHhCCCCcccCcccccCCcCCCHHHHHHHhcCCCcccCCchHHHHHHHHHHHHHHHhhcccCCCCEEEEEe
Confidence 0 00 000 00 00 0000 000000 011234667899999999
Q ss_pred CCCCCCChHHHHHHHHHHHHcCCCeEEEEcCCCCCcCCCCCcHHHHHHHHHHHHHHhC
Q 008873 493 MIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIERTL 550 (550)
Q Consensus 493 ~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p~~~H~~~~~~~~~~~~~~~~~fl~~~l 550 (550)
++|..+|++.+.++++++.. ...++.+||+++|.+......+++++.+.+||+.++
T Consensus 333 ~~D~vvp~~~a~~l~~~~~~--~~k~l~~~~ga~H~l~~e~~~e~v~~~I~~FL~~~~ 388 (395)
T PLN02652 333 TADRVTDPLASQDLYNEAAS--RHKDIKLYDGFLHDLLFEPEREEVGRDIIDWMEKRL 388 (395)
T ss_pred CCCCCCCHHHHHHHHHhcCC--CCceEEEECCCeEEeccCCCHHHHHHHHHHHHHHHh
Confidence 99999999999999987633 346788899999998665678899999999998764
No 26
>COG0412 Dienelactone hydrolase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.85 E-value=1.1e-19 Score=165.56 Aligned_cols=214 Identities=21% Similarity=0.193 Sum_probs=164.2
Q ss_pred eEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCch
Q 008873 299 DIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGL 378 (550)
Q Consensus 299 ~~~~~~~~~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~ 378 (550)
+.+++++.+ ..+.+++.+|... .+.|+||++|+-.+-. +.....++.|++.||.|++||.-+..+...
T Consensus 3 ~~v~~~~~~-~~~~~~~a~P~~~----~~~P~VIv~hei~Gl~-------~~i~~~a~rlA~~Gy~v~~Pdl~~~~~~~~ 70 (236)
T COG0412 3 TDVTIPAPD-GELPAYLARPAGA----GGFPGVIVLHEIFGLN-------PHIRDVARRLAKAGYVVLAPDLYGRQGDPT 70 (236)
T ss_pred cceEeeCCC-ceEeEEEecCCcC----CCCCEEEEEecccCCc-------hHHHHHHHHHHhCCcEEEechhhccCCCCC
Confidence 567788766 7899999999875 3449999999954432 123446889999999999999776322211
Q ss_pred hhH---HHHhh----cc-CCCchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCcc
Q 008873 379 KFE---ASIKH----NC-GRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWD 450 (550)
Q Consensus 379 ~~~---~~~~~----~~-~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~ 450 (550)
... ..... .. ......|+.++++||..++.++.++|+++|+|+||.+++.++...| .++|+++..|..-
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~d~~a~~~~L~~~~~~~~~~ig~~GfC~GG~~a~~~a~~~~-~v~a~v~fyg~~~-- 147 (236)
T COG0412 71 DIEDEPAELETGLVERVDPAEVLADIDAALDYLARQPQVDPKRIGVVGFCMGGGLALLAATRAP-EVKAAVAFYGGLI-- 147 (236)
T ss_pred cccccHHHHhhhhhccCCHHHHHHHHHHHHHHHHhCCCCCCceEEEEEEcccHHHHHHhhcccC-CccEEEEecCCCC--
Confidence 111 01111 01 1345789999999999998899999999999999999999999766 7899999876421
Q ss_pred cccchhhhhccCCCCCCccccccCChhhhhhcCCCcEEEEecCCCCCCChHHHHHHHHHHHHcCCCeEEEEcCCCCCcCC
Q 008873 451 GYDTFYTEKYMGLPSEDPVGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPR 530 (550)
Q Consensus 451 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p~~~H~~~ 530 (550)
.. ......++++|+|+.+|+.|..+|......+.+++...++.+++.+|+++.|+|.
T Consensus 148 --------------~~---------~~~~~~~~~~pvl~~~~~~D~~~p~~~~~~~~~~~~~~~~~~~~~~y~ga~H~F~ 204 (236)
T COG0412 148 --------------AD---------DTADAPKIKVPVLLHLAGEDPYIPAADVDALAAALEDAGVKVDLEIYPGAGHGFA 204 (236)
T ss_pred --------------CC---------cccccccccCcEEEEecccCCCCChhHHHHHHHHHHhcCCCeeEEEeCCCccccc
Confidence 00 0122678899999999999999999999999999999988999999999999996
Q ss_pred CCC----------cHHHHHHHHHHHHHHhC
Q 008873 531 RHR----------DRIYMEERIWEFIERTL 550 (550)
Q Consensus 531 ~~~----------~~~~~~~~~~~fl~~~l 550 (550)
... .....++++++||+++|
T Consensus 205 ~~~~~~~~~y~~~aa~~a~~~~~~ff~~~~ 234 (236)
T COG0412 205 NDRADYHPGYDAAAAEDAWQRVLAFFKRLL 234 (236)
T ss_pred cCCCcccccCCHHHHHHHHHHHHHHHHHhc
Confidence 432 34678999999999875
No 27
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.85 E-value=1.5e-19 Score=182.11 Aligned_cols=210 Identities=14% Similarity=0.099 Sum_probs=152.2
Q ss_pred ceEEEcCCCCeEEEEEEeCCCCCeEEEeecCCCCCCCCCcccccCCCCCCCCCeEEEEEEECCCCceEEEEcccCCCCCC
Q 008873 5 TGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQN 84 (550)
Q Consensus 5 ~~~~wSPdg~~lay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~ 84 (550)
....|||||++|+|++..++ +.+||++|+++++.++++.
T Consensus 221 ~~p~wSPDG~~La~~s~~~g---------------------------------~~~L~~~dl~tg~~~~lt~-------- 259 (448)
T PRK04792 221 MSPAWSPDGRKLAYVSFENR---------------------------------KAEIFVQDIYTQVREKVTS-------- 259 (448)
T ss_pred cCceECCCCCEEEEEEecCC---------------------------------CcEEEEEECCCCCeEEecC--------
Confidence 36789999999999875432 1468999999998877743
Q ss_pred CCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCceeeccCccccCCCCCccCCCc--EEEEEc
Q 008873 85 YDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYSGG--FIWASE 162 (550)
Q Consensus 85 ~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~s~ 162 (550)
.......++|||||+.|++...+. +..+||++++++++.++|+..... +..+ .|++|+ ++|.++
T Consensus 260 -~~g~~~~~~wSPDG~~La~~~~~~-g~~~Iy~~dl~tg~~~~lt~~~~~---~~~p---------~wSpDG~~I~f~s~ 325 (448)
T PRK04792 260 -FPGINGAPRFSPDGKKLALVLSKD-GQPEIYVVDIATKALTRITRHRAI---DTEP---------SWHPDGKSLIFTSE 325 (448)
T ss_pred -CCCCcCCeeECCCCCEEEEEEeCC-CCeEEEEEECCCCCeEECccCCCC---ccce---------EECCCCCEEEEEEC
Confidence 123344689999999888876554 357899999999998888764211 1111 345554 788888
Q ss_pred cCCccEEEEEeCCCceeeccccc-CeEEEEEEeEeecCCEEEEEEcCCCCceeEEEEEEeCCCCCCCCCCCeeeCCCCce
Q 008873 163 KTGFRHLYLHDINGTCLGPITEG-DWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTNGKGK 241 (550)
Q Consensus 163 ~~g~~~l~~~~~~~~~~~~lT~~-~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~~v~~~~~g~~~~~~~~~lt~~~~~ 241 (550)
++|..+||++++++++.++||.. .+. ..+ .|+|||+.|+|.....+ ..+||.+++ +++ +++.++.....
T Consensus 326 ~~g~~~Iy~~dl~~g~~~~Lt~~g~~~-~~~-~~SpDG~~l~~~~~~~g--~~~I~~~dl--~~g----~~~~lt~~~~d 395 (448)
T PRK04792 326 RGGKPQIYRVNLASGKVSRLTFEGEQN-LGG-SITPDGRSMIMVNRTNG--KFNIARQDL--ETG----AMQVLTSTRLD 395 (448)
T ss_pred CCCCceEEEEECCCCCEEEEecCCCCC-cCe-eECCCCCEEEEEEecCC--ceEEEEEEC--CCC----CeEEccCCCCC
Confidence 88889999999998888888843 332 223 59999999999877544 368999998 443 45667754333
Q ss_pred EEEEECCCCCEEEEeecCCCCCCEEEEEEcCCCceeEecc
Q 008873 242 HVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLY 281 (550)
Q Consensus 242 ~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~~~~~l~ 281 (550)
.++.|||||+.|+|..... ....+++++. +|+..+.+.
T Consensus 396 ~~ps~spdG~~I~~~~~~~-g~~~l~~~~~-~G~~~~~l~ 433 (448)
T PRK04792 396 ESPSVAPNGTMVIYSTTYQ-GKQVLAAVSI-DGRFKARLP 433 (448)
T ss_pred CCceECCCCCEEEEEEecC-CceEEEEEEC-CCCceEECc
Confidence 4568999999999887643 3457999997 566555564
No 28
>PRK10162 acetyl esterase; Provisional
Probab=99.85 E-value=1.9e-19 Score=173.43 Aligned_cols=228 Identities=16% Similarity=0.163 Sum_probs=158.9
Q ss_pred CeEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHh-CCcEEEEECCCCCCCC
Q 008873 298 PDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRS-KGILVWKLDNRGTARR 376 (550)
Q Consensus 298 ~~~~~~~~~~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~-~G~~vv~~d~rG~g~~ 376 (550)
.+.+.++..+| .+.+.+|.|.. .+.|+||++|||+......+. +......|+. .|+.|+++|||.....
T Consensus 57 ~~~~~i~~~~g-~i~~~~y~P~~-----~~~p~vv~~HGGg~~~g~~~~----~~~~~~~la~~~g~~Vv~vdYrlape~ 126 (318)
T PRK10162 57 TRAYMVPTPYG-QVETRLYYPQP-----DSQATLFYLHGGGFILGNLDT----HDRIMRLLASYSGCTVIGIDYTLSPEA 126 (318)
T ss_pred EEEEEEecCCC-ceEEEEECCCC-----CCCCEEEEEeCCcccCCCchh----hhHHHHHHHHHcCCEEEEecCCCCCCC
Confidence 57788887777 58999999964 235999999998754321122 2334666765 6999999999987532
Q ss_pred chhhHHHHhhccCCCchHHHHHHHHHHHHc---CCCCCCceEEEEechhHHHHHHHHhhC------CCeeEEEEEcCCcC
Q 008873 377 GLKFEASIKHNCGRIDAEDQLTGAEWLIKQ---GLAKVGHIGLYGWSYGGYLSAITLARF------PDVFQCAVSGAPVT 447 (550)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~---~~~d~~~i~i~G~S~GG~~a~~~~~~~------~~~~~~~v~~~~~~ 447 (550)
. + ...++|+.++++|+.++ ..+|++||+|+|+|+||.+++.++... +..++++++.+|+.
T Consensus 127 ~--~---------p~~~~D~~~a~~~l~~~~~~~~~d~~~i~l~G~SaGG~la~~~a~~~~~~~~~~~~~~~~vl~~p~~ 195 (318)
T PRK10162 127 R--F---------PQAIEEIVAVCCYFHQHAEDYGINMSRIGFAGDSAGAMLALASALWLRDKQIDCGKVAGVLLWYGLY 195 (318)
T ss_pred C--C---------CCcHHHHHHHHHHHHHhHHHhCCChhHEEEEEECHHHHHHHHHHHHHHhcCCCccChhheEEECCcc
Confidence 1 1 12378999999998764 347899999999999999999888642 35688899999987
Q ss_pred Ccccccc-----------------hhhhhccCCCCCCccccccCChh-hhhhcCCCcEEEEecCCCCCCChHHHHHHHHH
Q 008873 448 SWDGYDT-----------------FYTEKYMGLPSEDPVGYEYSSVM-HHVHKMKGKLLLVHGMIDENVHFRHTARLINA 509 (550)
Q Consensus 448 ~~~~~~~-----------------~~~~~~~g~~~~~~~~~~~~~~~-~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~ 509 (550)
+...... ++...|++.+.+... ...+|. ..+..--.|++|++|+.|... .++..+.++
T Consensus 196 ~~~~~~s~~~~~~~~~~l~~~~~~~~~~~y~~~~~~~~~--p~~~p~~~~l~~~lPp~~i~~g~~D~L~--de~~~~~~~ 271 (318)
T PRK10162 196 GLRDSVSRRLLGGVWDGLTQQDLQMYEEAYLSNDADRES--PYYCLFNNDLTRDVPPCFIAGAEFDPLL--DDSRLLYQT 271 (318)
T ss_pred CCCCChhHHHhCCCccccCHHHHHHHHHHhCCCccccCC--cccCcchhhhhcCCCCeEEEecCCCcCc--ChHHHHHHH
Confidence 7532111 011122222111000 011221 112122369999999999986 488999999
Q ss_pred HHHcCCCeEEEEcCCCCCcCCCC----CcHHHHHHHHHHHHHHhC
Q 008873 510 LVAARKPYEILIFPDERHMPRRH----RDRIYMEERIWEFIERTL 550 (550)
Q Consensus 510 l~~~~~~~~~~~~p~~~H~~~~~----~~~~~~~~~~~~fl~~~l 550 (550)
|+++|++++++++++..|+|... ......++.+.+||+++|
T Consensus 272 L~~aGv~v~~~~~~g~~H~f~~~~~~~~~a~~~~~~~~~~l~~~~ 316 (318)
T PRK10162 272 LAAHQQPCEFKLYPGTLHAFLHYSRMMDTADDALRDGAQFFTAQL 316 (318)
T ss_pred HHHcCCCEEEEEECCCceehhhccCchHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999998432 335677888999998865
No 29
>PF05448 AXE1: Acetyl xylan esterase (AXE1); InterPro: IPR008391 This family consists of several bacterial acetyl xylan esterase proteins. Acetyl xylan esterases are enzymes that hydrolyse the ester linkages of the acetyl groups in position 2 and/or 3 of the xylose moieties of natural acetylated xylan from hardwood. These enzymes are one of the accessory enzymes which are part of the xylanolytic system, together with xylanases, beta-xylosidases, alpha-arabinofuranosidases and methylglucuronidases; these are all required for the complete hydrolysis of xylan [].; PDB: 1VLQ_H 3M81_E 3M82_D 3M83_C 3FCY_A 1ODS_F 1ODT_C 1L7A_A 3FYT_A 2XLB_F ....
Probab=99.84 E-value=1.1e-20 Score=179.36 Aligned_cols=234 Identities=20% Similarity=0.269 Sum_probs=152.4
Q ss_pred CCeEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCC
Q 008873 297 PPDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARR 376 (550)
Q Consensus 297 ~~~~~~~~~~~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~ 376 (550)
+...++|.+.+|..|.++++.|.... ++.|+||.+||.++... . +. ....++.+||+|+.+|.||.|+.
T Consensus 55 ~vy~v~f~s~~g~~V~g~l~~P~~~~---~~~Pavv~~hGyg~~~~---~----~~-~~~~~a~~G~~vl~~d~rGqg~~ 123 (320)
T PF05448_consen 55 EVYDVSFESFDGSRVYGWLYRPKNAK---GKLPAVVQFHGYGGRSG---D----PF-DLLPWAAAGYAVLAMDVRGQGGR 123 (320)
T ss_dssp EEEEEEEEEGGGEEEEEEEEEES-SS---SSEEEEEEE--TT--GG---G----HH-HHHHHHHTT-EEEEE--TTTSSS
T ss_pred EEEEEEEEccCCCEEEEEEEecCCCC---CCcCEEEEecCCCCCCC---C----cc-cccccccCCeEEEEecCCCCCCC
Confidence 45679999999999999999998532 78999999999655421 1 11 12347899999999999998843
Q ss_pred chhhHHHH------hhccCC----------CchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhCCCeeEEE
Q 008873 377 GLKFEASI------KHNCGR----------IDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCA 440 (550)
Q Consensus 377 ~~~~~~~~------~~~~~~----------~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~ 440 (550)
..+..... ....|. ..+.|...++++|.+++.+|.+||++.|.|+||.+++.+++..+ +++++
T Consensus 124 ~~d~~~~~~~~~~g~~~~g~~~~~e~~yyr~~~~D~~ravd~l~slpevD~~rI~v~G~SqGG~lal~~aaLd~-rv~~~ 202 (320)
T PF05448_consen 124 SPDYRGSSGGTLKGHITRGIDDNPEDYYYRRVYLDAVRAVDFLRSLPEVDGKRIGVTGGSQGGGLALAAAALDP-RVKAA 202 (320)
T ss_dssp S-B-SSBSSS-SSSSTTTTTTS-TTT-HHHHHHHHHHHHHHHHHTSTTEEEEEEEEEEETHHHHHHHHHHHHSS-T-SEE
T ss_pred CCCccccCCCCCccHHhcCccCchHHHHHHHHHHHHHHHHHHHHhCCCcCcceEEEEeecCchHHHHHHHHhCc-cccEE
Confidence 32211000 000011 13689999999999999999999999999999999999999865 47888
Q ss_pred EEcCCc-CCccccc------chhhh--hcc----CCCCCCc---cccccCChhhhhhcCCCcEEEEecCCCCCCChHHHH
Q 008873 441 VSGAPV-TSWDGYD------TFYTE--KYM----GLPSEDP---VGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTA 504 (550)
Q Consensus 441 v~~~~~-~~~~~~~------~~~~~--~~~----g~~~~~~---~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~ 504 (550)
++..|. +|+.... ..|.+ +|+ ..+.... +.+.-.+..+.+++|++|+|+..|-.|+.||+....
T Consensus 203 ~~~vP~l~d~~~~~~~~~~~~~y~~~~~~~~~~d~~~~~~~~v~~~L~Y~D~~nfA~ri~~pvl~~~gl~D~~cPP~t~f 282 (320)
T PF05448_consen 203 AADVPFLCDFRRALELRADEGPYPEIRRYFRWRDPHHEREPEVFETLSYFDAVNFARRIKCPVLFSVGLQDPVCPPSTQF 282 (320)
T ss_dssp EEESESSSSHHHHHHHT--STTTHHHHHHHHHHSCTHCHHHHHHHHHHTT-HHHHGGG--SEEEEEEETT-SSS-HHHHH
T ss_pred EecCCCccchhhhhhcCCccccHHHHHHHHhccCCCcccHHHHHHHHhhhhHHHHHHHcCCCEEEEEecCCCCCCchhHH
Confidence 887774 3432210 11111 111 1111111 223445677889999999999999999999999999
Q ss_pred HHHHHHHHcCCCeEEEEcCCCCCcCCCCCcHHHHHHHHHHHHHHh
Q 008873 505 RLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIERT 549 (550)
Q Consensus 505 ~~~~~l~~~~~~~~~~~~p~~~H~~~~~~~~~~~~~~~~~fl~~~ 549 (550)
..++++ ..+.++.+||..+|.... ....++.++||.+|
T Consensus 283 A~yN~i---~~~K~l~vyp~~~He~~~----~~~~~~~~~~l~~~ 320 (320)
T PF05448_consen 283 AAYNAI---PGPKELVVYPEYGHEYGP----EFQEDKQLNFLKEH 320 (320)
T ss_dssp HHHCC-----SSEEEEEETT--SSTTH----HHHHHHHHHHHHH-
T ss_pred HHHhcc---CCCeeEEeccCcCCCchh----hHHHHHHHHHHhcC
Confidence 999988 346899999999997622 22257789999876
No 30
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.84 E-value=4.5e-19 Score=178.27 Aligned_cols=211 Identities=14% Similarity=0.122 Sum_probs=152.2
Q ss_pred ceEEEcCCCCeEEEEEEeCCCCCeEEEeecCCCCCCCCCcccccCCCCCCCCCeEEEEEEECCCCceEEEEcccCCCCCC
Q 008873 5 TGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQN 84 (550)
Q Consensus 5 ~~~~wSPdg~~lay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~ 84 (550)
....|||||++|||++...+. .+||++|+++++.++++.
T Consensus 199 ~~p~wSPDG~~la~~s~~~~~---------------------------------~~I~~~dl~~g~~~~l~~-------- 237 (427)
T PRK02889 199 ISPAWSPDGTKLAYVSFESKK---------------------------------PVVYVHDLATGRRRVVAN-------- 237 (427)
T ss_pred ccceEcCCCCEEEEEEccCCC---------------------------------cEEEEEECCCCCEEEeec--------
Confidence 467899999999998754221 368999999998877742
Q ss_pred CCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCceeeccCccccCCCCCccCCCc--EEEEEc
Q 008873 85 YDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYSGG--FIWASE 162 (550)
Q Consensus 85 ~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~s~ 162 (550)
.......++|||||+.|++..++. +..+||.+++++++.++|+..... +..+ .|++|+ ++|.++
T Consensus 238 -~~g~~~~~~~SPDG~~la~~~~~~-g~~~Iy~~d~~~~~~~~lt~~~~~---~~~~---------~wSpDG~~l~f~s~ 303 (427)
T PRK02889 238 -FKGSNSAPAWSPDGRTLAVALSRD-GNSQIYTVNADGSGLRRLTQSSGI---DTEP---------FFSPDGRSIYFTSD 303 (427)
T ss_pred -CCCCccceEECCCCCEEEEEEccC-CCceEEEEECCCCCcEECCCCCCC---CcCe---------EEcCCCCEEEEEec
Confidence 233456789999999888876554 346899999999988888653211 1111 345554 788898
Q ss_pred cCCccEEEEEeCCCceeecccccCeEEEEEEeEeecCCEEEEEEcCCCCceeEEEEEEeCCCCCCCCCCCeeeCCCCceE
Q 008873 163 KTGFRHLYLHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTNGKGKH 242 (550)
Q Consensus 163 ~~g~~~l~~~~~~~~~~~~lT~~~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~~v~~~~~g~~~~~~~~~lt~~~~~~ 242 (550)
+.|..+||.+++++++.+++|...-....+ .|||||++|+|.+...+. .+|+.+++ .++ +.++++......
T Consensus 304 ~~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~-~~SpDG~~Ia~~s~~~g~--~~I~v~d~--~~g----~~~~lt~~~~~~ 374 (427)
T PRK02889 304 RGGAPQIYRMPASGGAAQRVTFTGSYNTSP-RISPDGKLLAYISRVGGA--FKLYVQDL--ATG----QVTALTDTTRDE 374 (427)
T ss_pred CCCCcEEEEEECCCCceEEEecCCCCcCce-EECCCCCEEEEEEccCCc--EEEEEEEC--CCC----CeEEccCCCCcc
Confidence 888899999999888888887432112233 599999999999876543 68999998 333 456777654456
Q ss_pred EEEECCCCCEEEEeecCCCCCCEEEEEEcCCCceeEecc
Q 008873 243 VAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLY 281 (550)
Q Consensus 243 ~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~~~~~l~ 281 (550)
.+.|||||+.|+|....... ..++++++ +|+..+.+.
T Consensus 375 ~p~~spdg~~l~~~~~~~g~-~~l~~~~~-~g~~~~~l~ 411 (427)
T PRK02889 375 SPSFAPNGRYILYATQQGGR-SVLAAVSS-DGRIKQRLS 411 (427)
T ss_pred CceECCCCCEEEEEEecCCC-EEEEEEEC-CCCceEEee
Confidence 67999999999998765443 57999988 565444553
No 31
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.84 E-value=3.9e-19 Score=180.02 Aligned_cols=211 Identities=17% Similarity=0.158 Sum_probs=152.0
Q ss_pred ceEEEcCCCCeEEEEEEeCCCCCeEEEeecCCCCCCCCCcccccCCCCCCCCCeEEEEEEECCCCceEEEEcccCCCCCC
Q 008873 5 TGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQN 84 (550)
Q Consensus 5 ~~~~wSPdg~~lay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~ 84 (550)
....|||||++|||++.+... .+||++|+++++.++++.
T Consensus 202 ~~p~wSpDG~~la~~s~~~~~---------------------------------~~l~~~~l~~g~~~~l~~-------- 240 (430)
T PRK00178 202 LSPRWSPDGKRIAYVSFEQKR---------------------------------PRIFVQNLDTGRREQITN-------- 240 (430)
T ss_pred eeeeECCCCCEEEEEEcCCCC---------------------------------CEEEEEECCCCCEEEccC--------
Confidence 456899999999998754221 368999999998887743
Q ss_pred CCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCceeeccCccccCCCCCccCCC--cEEEEEc
Q 008873 85 YDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYSG--GFIWASE 162 (550)
Q Consensus 85 ~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~s~ 162 (550)
.......++|||||+.|++...+.. ..+||++++++++.++|+..... +..+ .|++| .++|.++
T Consensus 241 -~~g~~~~~~~SpDG~~la~~~~~~g-~~~Iy~~d~~~~~~~~lt~~~~~---~~~~---------~~spDg~~i~f~s~ 306 (430)
T PRK00178 241 -FEGLNGAPAWSPDGSKLAFVLSKDG-NPEIYVMDLASRQLSRVTNHPAI---DTEP---------FWGKDGRTLYFTSD 306 (430)
T ss_pred -CCCCcCCeEECCCCCEEEEEEccCC-CceEEEEECCCCCeEEcccCCCC---cCCe---------EECCCCCEEEEEEC
Confidence 2234456899999999988766543 46899999999998888753211 1111 34444 3888899
Q ss_pred cCCccEEEEEeCCCceeecccccCeEEEEEEeEeecCCEEEEEEcCCCCceeEEEEEEeCCCCCCCCCCCeeeCCCCceE
Q 008873 163 KTGFRHLYLHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTNGKGKH 242 (550)
Q Consensus 163 ~~g~~~l~~~~~~~~~~~~lT~~~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~~v~~~~~g~~~~~~~~~lt~~~~~~ 242 (550)
+.|..+||++++++++.++||....... ...|||||+.|+|.....+ ..+|+.+++ .++ +.++|+......
T Consensus 307 ~~g~~~iy~~d~~~g~~~~lt~~~~~~~-~~~~Spdg~~i~~~~~~~~--~~~l~~~dl--~tg----~~~~lt~~~~~~ 377 (430)
T PRK00178 307 RGGKPQIYKVNVNGGRAERVTFVGNYNA-RPRLSADGKTLVMVHRQDG--NFHVAAQDL--QRG----SVRILTDTSLDE 377 (430)
T ss_pred CCCCceEEEEECCCCCEEEeecCCCCcc-ceEECCCCCEEEEEEccCC--ceEEEEEEC--CCC----CEEEccCCCCCC
Confidence 8899999999998888888885421112 2359999999999987654 368999998 433 567777654444
Q ss_pred EEEECCCCCEEEEeecCCCCCCEEEEEEcCCCceeEecc
Q 008873 243 VAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLY 281 (550)
Q Consensus 243 ~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~~~~~l~ 281 (550)
.+.|||||+.++|+...... ..|+++++ +|...+.+.
T Consensus 378 ~p~~spdg~~i~~~~~~~g~-~~l~~~~~-~g~~~~~l~ 414 (430)
T PRK00178 378 SPSVAPNGTMLIYATRQQGR-GVLMLVSI-NGRVRLPLP 414 (430)
T ss_pred CceECCCCCEEEEEEecCCc-eEEEEEEC-CCCceEECc
Confidence 56899999999988765433 57999998 454444443
No 32
>PRK05371 x-prolyl-dipeptidyl aminopeptidase; Provisional
Probab=99.84 E-value=4.5e-19 Score=187.24 Aligned_cols=191 Identities=18% Similarity=0.275 Sum_probs=146.9
Q ss_pred HhHHHHhCCcEEEEECCCCCCCCchhhHHHHhhccCCCchHHHHHHHHHHHHcC--CCC------------CCceEEEEe
Q 008873 354 RAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQG--LAK------------VGHIGLYGW 419 (550)
Q Consensus 354 ~~~~l~~~G~~vv~~d~rG~g~~~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~--~~d------------~~~i~i~G~ 419 (550)
+.++++++||+||.+|.||+++|+..+. .++..+.+|..++|+||..+. +.| ..+|+++|.
T Consensus 271 ~~~~~~~rGYaVV~~D~RGtg~SeG~~~-----~~~~~E~~D~~~vIeWl~~~~~~~~d~~~~~~~kq~WsnGkVGm~G~ 345 (767)
T PRK05371 271 LNDYFLPRGFAVVYVSGIGTRGSDGCPT-----TGDYQEIESMKAVIDWLNGRATAYTDRTRGKEVKADWSNGKVAMTGK 345 (767)
T ss_pred HHHHHHhCCeEEEEEcCCCCCCCCCcCc-----cCCHHHHHHHHHHHHHHhhCCccccccccccccccCCCCCeeEEEEE
Confidence 4688999999999999999999877543 234557899999999999542 223 479999999
Q ss_pred chhHHHHHHHHhhCCCeeEEEEEcCCcCCccccc-c--------hh--------h----hhcc--CC-------------
Q 008873 420 SYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYD-T--------FY--------T----EKYM--GL------------- 463 (550)
Q Consensus 420 S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~~~~-~--------~~--------~----~~~~--g~------------- 463 (550)
||||++++.+|+..|+.++|+|+.+++.+|..+. . .+ . .+.. +.
T Consensus 346 SY~G~~~~~aAa~~pp~LkAIVp~a~is~~yd~yr~~G~~~~~~g~~ged~d~l~~~~~~r~~~~~~~~~~~~~~~~~~~ 425 (767)
T PRK05371 346 SYLGTLPNAVATTGVEGLETIIPEAAISSWYDYYRENGLVRAPGGYQGEDLDVLAELTYSRNLLAGDYLRHNEACEKLLA 425 (767)
T ss_pred cHHHHHHHHHHhhCCCcceEEEeeCCCCcHHHHhhcCCceeccCCcCCcchhhHHHHhhhcccCcchhhcchHHHHHHHh
Confidence 9999999999998888999999999998764211 0 00 0 0000 00
Q ss_pred ---------CCCCccccccCChhhhhhcCCCcEEEEecCCCCCCChHHHHHHHHHHHHcCCCeEEEEcCCCCCcCCCCCc
Q 008873 464 ---------PSEDPVGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRD 534 (550)
Q Consensus 464 ---------~~~~~~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p~~~H~~~~~~~ 534 (550)
.....+.|...+++.+++++++|+|++||..|.++++.++.+++++|++.+.+.++.+.++ +|.......
T Consensus 426 ~~~~~~~~~~~~y~~fW~~rn~~~~~~kIkvPvLlIhGw~D~~V~~~~s~~ly~aL~~~g~pkkL~l~~g-~H~~~~~~~ 504 (767)
T PRK05371 426 ELTAAQDRKTGDYNDFWDDRNYLKDADKIKASVLVVHGLNDWNVKPKQVYQWWDALPENGVPKKLFLHQG-GHVYPNNWQ 504 (767)
T ss_pred hhhhhhhhcCCCccHHHHhCCHhhHhhCCCCCEEEEeeCCCCCCChHHHHHHHHHHHhcCCCeEEEEeCC-CccCCCchh
Confidence 0011233455677888999999999999999999999999999999999888888877765 686544445
Q ss_pred HHHHHHHHHHHHHHhC
Q 008873 535 RIYMEERIWEFIERTL 550 (550)
Q Consensus 535 ~~~~~~~~~~fl~~~l 550 (550)
..++.+.+.+||.++|
T Consensus 505 ~~d~~e~~~~Wfd~~L 520 (767)
T PRK05371 505 SIDFRDTMNAWFTHKL 520 (767)
T ss_pred HHHHHHHHHHHHHhcc
Confidence 6778899999999886
No 33
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.83 E-value=1.2e-18 Score=174.15 Aligned_cols=192 Identities=14% Similarity=0.133 Sum_probs=135.2
Q ss_pred EEEEEEECCCCceEEEEcccCCCCCCCCCceeEEEEECCCCeEEEEEEecCCCceEEEEE--ECCC---CceEEEEEeec
Q 008873 59 VRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKF--DIKT---GQRKVILVEEL 133 (550)
Q Consensus 59 ~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~--~~~~---g~~~~l~~~~~ 133 (550)
.+||+.++++|+.++++.. ......|+|||||+.|+|+.++.. ..++|.. ++++ |+.++|+....
T Consensus 211 ~~I~~~~l~~g~~~~lt~~---------~g~~~~p~wSPDG~~Laf~s~~~g-~~di~~~~~~~~~g~~g~~~~lt~~~~ 280 (428)
T PRK01029 211 PKIFLGSLENPAGKKILAL---------QGNQLMPTFSPRKKLLAFISDRYG-NPDLFIQSFSLETGAIGKPRRLLNEAF 280 (428)
T ss_pred ceEEEEECCCCCceEeecC---------CCCccceEECCCCCEEEEEECCCC-CcceeEEEeecccCCCCcceEeecCCC
Confidence 4689999999998888542 334456899999999999876543 3356664 5554 56677775321
Q ss_pred CceeeccCccccCCCCCccCCCc--EEEEEccCCccEEEEEeCC--CceeecccccCeEEEEEEeEeecCCEEEEEEcCC
Q 008873 134 DSWVNLHDCFTPLDKGVTKYSGG--FIWASEKTGFRHLYLHDIN--GTCLGPITEGDWMVEQIVGVNEASGQVYFTGTLD 209 (550)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~s~~~g~~~l~~~~~~--~~~~~~lT~~~~~~~~~~~~s~dg~~l~f~~~~~ 209 (550)
. .+.. + .|++|+ ++|.++++|..+||+++++ +++.++||.+...+..+ .|||||++|+|.....
T Consensus 281 ~--~~~~----p-----~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p-~wSPDG~~Laf~~~~~ 348 (428)
T PRK01029 281 G--TQGN----P-----SFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCP-AWSPDGKKIAFCSVIK 348 (428)
T ss_pred C--CcCC----e-----EECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccce-eECCCCCEEEEEEcCC
Confidence 1 0011 1 356655 8888988888999999875 35578888764333444 4999999999998765
Q ss_pred CCceeEEEEEEeCCCCCCCCCCCeeeCCCC-ceEEEEECCCCCEEEEeecCCCCCCEEEEEEcCCCceeEeccC
Q 008873 210 GPLESHLYCAKLYPDWNHTLEAPVKLTNGK-GKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLYE 282 (550)
Q Consensus 210 ~~~~~~l~~v~~~~~g~~~~~~~~~lt~~~-~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~~~~~l~~ 282 (550)
+ ..+|+.+++ .++ +.++|+... ....+.|||||+.|+|+.... ....||++++.+++ .+.++.
T Consensus 349 g--~~~I~v~dl--~~g----~~~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~-g~~~L~~vdl~~g~-~~~Lt~ 412 (428)
T PRK01029 349 G--VRQICVYDL--ATG----RDYQLTTSPENKESPSWAIDSLHLVYSAGNS-NESELYLISLITKK-TRKIVI 412 (428)
T ss_pred C--CcEEEEEEC--CCC----CeEEccCCCCCccceEECCCCCEEEEEECCC-CCceEEEEECCCCC-EEEeec
Confidence 4 368999998 443 567887653 345678999999999887653 34689999997665 455554
No 34
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.83 E-value=8.4e-19 Score=176.96 Aligned_cols=211 Identities=15% Similarity=0.099 Sum_probs=152.1
Q ss_pred ceEEEcCCCCeEEEEEEeCCCCCeEEEeecCCCCCCCCCcccccCCCCCCCCCeEEEEEEECCCCceEEEEcccCCCCCC
Q 008873 5 TGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQN 84 (550)
Q Consensus 5 ~~~~wSPdg~~lay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~ 84 (550)
....|||||++|+|++.... ..+|+++|+++++.++++.
T Consensus 207 ~~p~wSpDg~~la~~s~~~~---------------------------------~~~l~~~dl~~g~~~~l~~-------- 245 (433)
T PRK04922 207 LSPAWSPDGKKLAYVSFERG---------------------------------RSAIYVQDLATGQRELVAS-------- 245 (433)
T ss_pred ccccCCCCCCEEEEEecCCC---------------------------------CcEEEEEECCCCCEEEecc--------
Confidence 45689999999999865422 1468999999998877742
Q ss_pred CCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCceeeccCccccCCCCCccCCCc--EEEEEc
Q 008873 85 YDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYSGG--FIWASE 162 (550)
Q Consensus 85 ~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~s~ 162 (550)
.......++|||||+.|++...+.. ..+||++++++|+.++|+..... +..+ .|++|+ ++|.++
T Consensus 246 -~~g~~~~~~~SpDG~~l~~~~s~~g-~~~Iy~~d~~~g~~~~lt~~~~~---~~~~---------~~spDG~~l~f~sd 311 (433)
T PRK04922 246 -FRGINGAPSFSPDGRRLALTLSRDG-NPEIYVMDLGSRQLTRLTNHFGI---DTEP---------TWAPDGKSIYFTSD 311 (433)
T ss_pred -CCCCccCceECCCCCEEEEEEeCCC-CceEEEEECCCCCeEECccCCCC---ccce---------EECCCCCEEEEEEC
Confidence 1334456899999998888765543 46899999999999888754211 1111 345544 888899
Q ss_pred cCCccEEEEEeCCCceeecccccCeEEEEEEeEeecCCEEEEEEcCCCCceeEEEEEEeCCCCCCCCCCCeeeCCCCceE
Q 008873 163 KTGFRHLYLHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTNGKGKH 242 (550)
Q Consensus 163 ~~g~~~l~~~~~~~~~~~~lT~~~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~~v~~~~~g~~~~~~~~~lt~~~~~~ 242 (550)
+.|..+||++++++++.++||.+...... ..|||||+.|+|.....+ ..+|+.+++ .++ +.++|+.+....
T Consensus 312 ~~g~~~iy~~dl~~g~~~~lt~~g~~~~~-~~~SpDG~~Ia~~~~~~~--~~~I~v~d~--~~g----~~~~Lt~~~~~~ 382 (433)
T PRK04922 312 RGGRPQIYRVAASGGSAERLTFQGNYNAR-ASVSPDGKKIAMVHGSGG--QYRIAVMDL--STG----SVRTLTPGSLDE 382 (433)
T ss_pred CCCCceEEEEECCCCCeEEeecCCCCccC-EEECCCCCEEEEEECCCC--ceeEEEEEC--CCC----CeEECCCCCCCC
Confidence 88889999999988888888854322223 359999999999876543 368999998 443 466787654455
Q ss_pred EEEECCCCCEEEEeecCCCCCCEEEEEEcCCCceeEecc
Q 008873 243 VAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLY 281 (550)
Q Consensus 243 ~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~~~~~l~ 281 (550)
.+.|||||+.++|..... .-..|+++++ +|+..+.+.
T Consensus 383 ~p~~spdG~~i~~~s~~~-g~~~L~~~~~-~g~~~~~l~ 419 (433)
T PRK04922 383 SPSFAPNGSMVLYATREG-GRGVLAAVST-DGRVRQRLV 419 (433)
T ss_pred CceECCCCCEEEEEEecC-CceEEEEEEC-CCCceEEcc
Confidence 678999999999887653 3468999998 455455554
No 35
>KOG1552 consensus Predicted alpha/beta hydrolase [General function prediction only]
Probab=99.83 E-value=3e-19 Score=156.61 Aligned_cols=216 Identities=21% Similarity=0.174 Sum_probs=156.9
Q ss_pred CCeEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHH-hCCcEEEEECCCCCCC
Q 008873 297 PPDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLR-SKGILVWKLDNRGTAR 375 (550)
Q Consensus 297 ~~~~~~~~~~~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~-~~G~~vv~~d~rG~g~ 375 (550)
..+.+..++..|..+....+.|+.. ..++|++.||.... .. +...+...|. ..++.|+.+||+|.|.
T Consensus 34 ~v~v~~~~t~rgn~~~~~y~~~~~~-----~~~~lly~hGNa~D--lg-----q~~~~~~~l~~~ln~nv~~~DYSGyG~ 101 (258)
T KOG1552|consen 34 FVEVFKVKTSRGNEIVCMYVRPPEA-----AHPTLLYSHGNAAD--LG-----QMVELFKELSIFLNCNVVSYDYSGYGR 101 (258)
T ss_pred ccceEEeecCCCCEEEEEEEcCccc-----cceEEEEcCCcccc--hH-----HHHHHHHHHhhcccceEEEEecccccc
Confidence 5677778888888888888888763 45899999996222 11 1111122233 3599999999999998
Q ss_pred CchhhHHHHhhccCCCchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCcccccch
Q 008873 376 RGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTF 455 (550)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 455 (550)
++.+..+. ..++|+.++.+||.+... ..++|+++|+|+|...++.+|++.| .+|+|+.+|+++......-
T Consensus 102 S~G~psE~-------n~y~Di~avye~Lr~~~g-~~~~Iil~G~SiGt~~tv~Lasr~~--~~alVL~SPf~S~~rv~~~ 171 (258)
T KOG1552|consen 102 SSGKPSER-------NLYADIKAVYEWLRNRYG-SPERIILYGQSIGTVPTVDLASRYP--LAAVVLHSPFTSGMRVAFP 171 (258)
T ss_pred cCCCcccc-------cchhhHHHHHHHHHhhcC-CCceEEEEEecCCchhhhhHhhcCC--cceEEEeccchhhhhhhcc
Confidence 87654422 348999999999999865 6789999999999999999999988 7999999998764321100
Q ss_pred hhhhccCCCCCCccccccCChhhhhhcCCCcEEEEecCCCCCCChHHHHHHHHHHHHcCCCeEEEEcCCCCCcCCCCCcH
Q 008873 456 YTEKYMGLPSEDPVGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDR 535 (550)
Q Consensus 456 ~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p~~~H~~~~~~~~ 535 (550)
-... . -.+........+..+++|+|++||+.|+++++.++.+++++++. +++..+..+++|.-. +..
T Consensus 172 ~~~~-------~-~~~d~f~~i~kI~~i~~PVLiiHgtdDevv~~sHg~~Lye~~k~---~~epl~v~g~gH~~~--~~~ 238 (258)
T KOG1552|consen 172 DTKT-------T-YCFDAFPNIEKISKITCPVLIIHGTDDEVVDFSHGKALYERCKE---KVEPLWVKGAGHNDI--ELY 238 (258)
T ss_pred Ccce-------E-EeeccccccCcceeccCCEEEEecccCceecccccHHHHHhccc---cCCCcEEecCCCccc--ccC
Confidence 0000 0 11122233567788889999999999999999999999998743 467788889999752 333
Q ss_pred HHHHHHHHHHHH
Q 008873 536 IYMEERIWEFIE 547 (550)
Q Consensus 536 ~~~~~~~~~fl~ 547 (550)
.++.+.+..|+.
T Consensus 239 ~~yi~~l~~f~~ 250 (258)
T KOG1552|consen 239 PEYIEHLRRFIS 250 (258)
T ss_pred HHHHHHHHHHHH
Confidence 456666666664
No 36
>COG2267 PldB Lysophospholipase [Lipid metabolism]
Probab=99.82 E-value=5.5e-19 Score=167.08 Aligned_cols=232 Identities=22% Similarity=0.223 Sum_probs=159.0
Q ss_pred CeEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCc
Q 008873 298 PDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRG 377 (550)
Q Consensus 298 ~~~~~~~~~~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~ 377 (550)
..+-.+.+.||..+.+..+.+... +..+||++||..+... .+...+..|..+||.|+++|.||+|.+.
T Consensus 9 ~~~~~~~~~d~~~~~~~~~~~~~~-----~~g~Vvl~HG~~Eh~~-------ry~~la~~l~~~G~~V~~~D~RGhG~S~ 76 (298)
T COG2267 9 RTEGYFTGADGTRLRYRTWAAPEP-----PKGVVVLVHGLGEHSG-------RYEELADDLAARGFDVYALDLRGHGRSP 76 (298)
T ss_pred cccceeecCCCceEEEEeecCCCC-----CCcEEEEecCchHHHH-------HHHHHHHHHHhCCCEEEEecCCCCCCCC
Confidence 355667788999999999988753 2279999999766543 4555788999999999999999999985
Q ss_pred h--hhHHHHhhccCCCchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCccc---c
Q 008873 378 L--KFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDG---Y 452 (550)
Q Consensus 378 ~--~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~~---~ 452 (550)
+ ...-....++ ..|+.+.++.+... .-..+++|+||||||.+++.++.+++..++++|+.+|...... .
T Consensus 77 r~~rg~~~~f~~~----~~dl~~~~~~~~~~--~~~~p~~l~gHSmGg~Ia~~~~~~~~~~i~~~vLssP~~~l~~~~~~ 150 (298)
T COG2267 77 RGQRGHVDSFADY----VDDLDAFVETIAEP--DPGLPVFLLGHSMGGLIALLYLARYPPRIDGLVLSSPALGLGGAILR 150 (298)
T ss_pred CCCcCCchhHHHH----HHHHHHHHHHHhcc--CCCCCeEEEEeCcHHHHHHHHHHhCCccccEEEEECccccCChhHHH
Confidence 2 1111111111 34444444444432 1246899999999999999999999999999999999876542 0
Q ss_pred cc-----------hhhhhccCC----------CCCCc---cccccC----------------------ChhhhhhcCCCc
Q 008873 453 DT-----------FYTEKYMGL----------PSEDP---VGYEYS----------------------SVMHHVHKMKGK 486 (550)
Q Consensus 453 ~~-----------~~~~~~~g~----------~~~~~---~~~~~~----------------------~~~~~~~~i~~P 486 (550)
.. ....-.... ...++ +.|.+. .......+++.|
T Consensus 151 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~sr~~~~~~~~~~dP~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~P 230 (298)
T COG2267 151 LILARLALKLLGRIRPKLPVDSNLLEGVLTDDLSRDPAEVAAYEADPLIGVGGPVSRWVDLALLAGRVPALRDAPAIALP 230 (298)
T ss_pred HHHHHHhcccccccccccccCcccccCcCcchhhcCHHHHHHHhcCCccccCCccHHHHHHHHHhhcccchhccccccCC
Confidence 00 000000000 00000 011100 011224456789
Q ss_pred EEEEecCCCCCCC-hHHHHHHHHHHHHcCC-CeEEEEcCCCCCcCCCCCcH--HHHHHHHHHHHHHhC
Q 008873 487 LLLVHGMIDENVH-FRHTARLINALVAARK-PYEILIFPDERHMPRRHRDR--IYMEERIWEFIERTL 550 (550)
Q Consensus 487 ~lii~G~~D~~v~-~~~~~~~~~~l~~~~~-~~~~~~~p~~~H~~~~~~~~--~~~~~~~~~fl~~~l 550 (550)
+||++|+.|.+|+ .....++++++ +. +.++.++|++.|.+....+. ..+++.+.+||.+++
T Consensus 231 vLll~g~~D~vv~~~~~~~~~~~~~---~~~~~~~~~~~g~~He~~~E~~~~r~~~~~~~~~~l~~~~ 295 (298)
T COG2267 231 VLLLQGGDDRVVDNVEGLARFFERA---GSPDKELKVIPGAYHELLNEPDRAREEVLKDILAWLAEAL 295 (298)
T ss_pred EEEEecCCCccccCcHHHHHHHHhc---CCCCceEEecCCcchhhhcCcchHHHHHHHHHHHHHHhhc
Confidence 9999999999999 67777777765 43 47999999999998776676 899999999998763
No 37
>TIGR01840 esterase_phb esterase, PHB depolymerase family. This model describes a subfamily among lipases of the ab-hydrolase family. This subfamily includes bacterial depolymerases for poly(3-hydroxybutyrate) (PHB) and related polyhydroxyalkanoates (PHA), as well as acetyl xylan esterases, feruloyl esterases, and others from fungi.
Probab=99.82 E-value=2.2e-19 Score=163.08 Aligned_cols=191 Identities=13% Similarity=0.084 Sum_probs=125.0
Q ss_pred EEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCchhh--HHHHhhccCC
Q 008873 313 GALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKF--EASIKHNCGR 390 (550)
Q Consensus 313 ~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~~~--~~~~~~~~~~ 390 (550)
+++|.|++.. +++|+||++||+++... .+...+. +.+++.+.||+|++||++|+++.+..| ........+.
T Consensus 1 ~~ly~P~~~~---~~~P~vv~lHG~~~~~~---~~~~~~~-~~~~a~~~g~~Vv~Pd~~g~~~~~~~~~~~~~~~~~~~~ 73 (212)
T TIGR01840 1 MYVYVPAGLT---GPRALVLALHGCGQTAS---AYVIDWG-WKAAADRYGFVLVAPEQTSYNSSNNCWDWFFTHHRARGT 73 (212)
T ss_pred CEEEcCCCCC---CCCCEEEEeCCCCCCHH---HHhhhcC-hHHHHHhCCeEEEecCCcCccccCCCCCCCCccccCCCC
Confidence 4688898742 57899999999876532 1111111 345566789999999999987544322 1111112233
Q ss_pred CchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCccc--ccchhhhhccCCCCCCc
Q 008873 391 IDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDG--YDTFYTEKYMGLPSEDP 468 (550)
Q Consensus 391 ~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~~--~~~~~~~~~~g~~~~~~ 468 (550)
.+..|+...++++.++..+|++||+|+|+|+||++++.++.++|++|+++++.++...... ....... + .+....
T Consensus 74 ~~~~~~~~~i~~~~~~~~id~~~i~l~G~S~Gg~~a~~~a~~~p~~~~~~~~~~g~~~~~~~~~~~~~~~--~-~~~~~~ 150 (212)
T TIGR01840 74 GEVESLHQLIDAVKANYSIDPNRVYVTGLSAGGGMTAVLGCTYPDVFAGGASNAGLPYGEASSSISATPQ--M-CTAATA 150 (212)
T ss_pred ccHHHHHHHHHHHHHhcCcChhheEEEEECHHHHHHHHHHHhCchhheEEEeecCCcccccccchhhHhh--c-CCCCCH
Confidence 4678889999999988779999999999999999999999999999999998887532111 0000000 0 000111
Q ss_pred cccccCC-h-hhhhhcCCCcEEEEecCCCCCCChHHHHHHHHHHHHc
Q 008873 469 VGYEYSS-V-MHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAA 513 (550)
Q Consensus 469 ~~~~~~~-~-~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~ 513 (550)
..+.+.. . .....+...|++|+||++|.+||++.+.++++++++.
T Consensus 151 ~~~~~~~~~~~~~~~~~~p~~~i~hG~~D~vVp~~~~~~~~~~l~~~ 197 (212)
T TIGR01840 151 ASVCRLVRGMQSEYNGPTPIMSVVHGDADYTVLPGNADEIRDAMLKV 197 (212)
T ss_pred HHHHHHHhccCCcccCCCCeEEEEEcCCCceeCcchHHHHHHHHHHh
Confidence 1110000 0 0011122345789999999999999999999999876
No 38
>KOG4391 consensus Predicted alpha/beta hydrolase BEM46 [General function prediction only]
Probab=99.81 E-value=2e-19 Score=151.01 Aligned_cols=225 Identities=15% Similarity=0.136 Sum_probs=163.8
Q ss_pred CCeEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCC
Q 008873 297 PPDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARR 376 (550)
Q Consensus 297 ~~~~~~~~~~~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~ 376 (550)
+.+.+++++.|..+++++++.-. ...|+++++|+..+... .......-++.+.+.+|+.++|||.|.+
T Consensus 53 pye~i~l~T~D~vtL~a~~~~~E------~S~pTlLyfh~NAGNmG------hr~~i~~~fy~~l~mnv~ivsYRGYG~S 120 (300)
T KOG4391|consen 53 PYERIELRTRDKVTLDAYLMLSE------SSRPTLLYFHANAGNMG------HRLPIARVFYVNLKMNVLIVSYRGYGKS 120 (300)
T ss_pred CceEEEEEcCcceeEeeeeeccc------CCCceEEEEccCCCccc------chhhHHHHHHHHcCceEEEEEeeccccC
Confidence 56899999999999999999832 35699999999655432 1222223456788999999999999987
Q ss_pred chhhHHHHhhccCCCchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCcccccc--
Q 008873 377 GLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDT-- 454 (550)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~~~~~-- 454 (550)
.....+.. -..|..++++||.+++..|..+|.+.|.|.||.++..+++++.+++.|++...-+........
T Consensus 121 ~GspsE~G-------L~lDs~avldyl~t~~~~dktkivlfGrSlGGAvai~lask~~~ri~~~ivENTF~SIp~~~i~~ 193 (300)
T KOG4391|consen 121 EGSPSEEG-------LKLDSEAVLDYLMTRPDLDKTKIVLFGRSLGGAVAIHLASKNSDRISAIIVENTFLSIPHMAIPL 193 (300)
T ss_pred CCCccccc-------eeccHHHHHHHHhcCccCCcceEEEEecccCCeeEEEeeccchhheeeeeeechhccchhhhhhe
Confidence 65433322 156889999999999999999999999999999999999999999999999877665522110
Q ss_pred --hhhhhccCCCCCCccccc-cCChhhhhhcCCCcEEEEecCCCCCCChHHHHHHHHHHHHcCCCeEEEEcCCCCCcCCC
Q 008873 455 --FYTEKYMGLPSEDPVGYE-YSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRR 531 (550)
Q Consensus 455 --~~~~~~~g~~~~~~~~~~-~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p~~~H~~~~ 531 (550)
.+..+++. .--++ .......+.+-+.|+|++.|..|+.|||-+..++++.+-.+ ..++..||++.|.-+.
T Consensus 194 v~p~~~k~i~-----~lc~kn~~~S~~ki~~~~~P~LFiSGlkDelVPP~~Mr~Ly~~c~S~--~Krl~eFP~gtHNDT~ 266 (300)
T KOG4391|consen 194 VFPFPMKYIP-----LLCYKNKWLSYRKIGQCRMPFLFISGLKDELVPPVMMRQLYELCPSR--TKRLAEFPDGTHNDTW 266 (300)
T ss_pred eccchhhHHH-----HHHHHhhhcchhhhccccCceEEeecCccccCCcHHHHHHHHhCchh--hhhheeCCCCccCceE
Confidence 01111110 00000 11122334455689999999999999999999999887443 4578999999997543
Q ss_pred CCcHHHHHHHHHHHHHHh
Q 008873 532 HRDRIYMEERIWEFIERT 549 (550)
Q Consensus 532 ~~~~~~~~~~~~~fl~~~ 549 (550)
. ..-+++.+.+||.+.
T Consensus 267 i--~dGYfq~i~dFlaE~ 282 (300)
T KOG4391|consen 267 I--CDGYFQAIEDFLAEV 282 (300)
T ss_pred E--eccHHHHHHHHHHHh
Confidence 2 235678889998763
No 39
>PRK11460 putative hydrolase; Provisional
Probab=99.80 E-value=3.9e-18 Score=156.33 Aligned_cols=185 Identities=13% Similarity=0.103 Sum_probs=127.6
Q ss_pred CCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCC----CchhhHHHHhhccCCC-------chH
Q 008873 326 PPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTAR----RGLKFEASIKHNCGRI-------DAE 394 (550)
Q Consensus 326 ~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~----~~~~~~~~~~~~~~~~-------~~~ 394 (550)
++.|+||++||.+++.. .+..+.+.|...++.+..+.++|... .+..|... ....... ...
T Consensus 14 ~~~~~vIlLHG~G~~~~-------~~~~l~~~l~~~~~~~~~i~~~g~~~~~~~~g~~W~~~-~~~~~~~~~~~~~~~~~ 85 (232)
T PRK11460 14 PAQQLLLLFHGVGDNPV-------AMGEIGSWFAPAFPDALVVSVGGPEPSGNGAGRQWFSV-QGITEDNRQARVAAIMP 85 (232)
T ss_pred CCCcEEEEEeCCCCChH-------HHHHHHHHHHHHCCCCEEECCCCCCCcCCCCCcccccC-CCCCccchHHHHHHHHH
Confidence 45689999999766543 23445677877765555555555321 12222210 0000001 123
Q ss_pred HHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCcccccchhhhhccCCCCCCccccccC
Q 008873 395 DQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTFYTEKYMGLPSEDPVGYEYS 474 (550)
Q Consensus 395 D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 474 (550)
.+.+.++++.++..++.++|+++|+|+||.+++.++..+|+++.++++.++... ..+.
T Consensus 86 ~l~~~i~~~~~~~~~~~~~i~l~GfS~Gg~~al~~a~~~~~~~~~vv~~sg~~~-------------~~~~--------- 143 (232)
T PRK11460 86 TFIETVRYWQQQSGVGASATALIGFSQGAIMALEAVKAEPGLAGRVIAFSGRYA-------------SLPE--------- 143 (232)
T ss_pred HHHHHHHHHHHhcCCChhhEEEEEECHHHHHHHHHHHhCCCcceEEEEeccccc-------------cccc---------
Confidence 344566666667678889999999999999999999888988888887765311 0000
Q ss_pred ChhhhhhcCCCcEEEEecCCCCCCChHHHHHHHHHHHHcCCCeEEEEcCCCCCcCCCCCcHHHHHHHHHHHHHHhC
Q 008873 475 SVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIERTL 550 (550)
Q Consensus 475 ~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p~~~H~~~~~~~~~~~~~~~~~fl~~~l 550 (550)
....++|+|++||++|++||++.+.++.++|++.+.++++.+||+++|.+.. +..+.+.+||.+.|
T Consensus 144 -----~~~~~~pvli~hG~~D~vvp~~~~~~~~~~L~~~g~~~~~~~~~~~gH~i~~-----~~~~~~~~~l~~~l 209 (232)
T PRK11460 144 -----TAPTATTIHLIHGGEDPVIDVAHAVAAQEALISLGGDVTLDIVEDLGHAIDP-----RLMQFALDRLRYTV 209 (232)
T ss_pred -----cccCCCcEEEEecCCCCccCHHHHHHHHHHHHHCCCCeEEEEECCCCCCCCH-----HHHHHHHHHHHHHc
Confidence 1123689999999999999999999999999999999999999999999843 44566777777654
No 40
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.80 E-value=2.9e-17 Score=164.22 Aligned_cols=194 Identities=14% Similarity=0.146 Sum_probs=140.2
Q ss_pred EEEEEEECCCCceEEEEcccCCCCCCCCCceeEEEEECCCCeE--EEEEEecCCCceEEEEEECCCCceEEEEEeecCce
Q 008873 59 VRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNIL--TAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSW 136 (550)
Q Consensus 59 ~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~wspDg~~--i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~ 136 (550)
.+||++|.+++..++|+.. .....+|+|||||+. ++|++.+. +..+||++++++|+.++|+...+..
T Consensus 165 ~~l~~~d~dG~~~~~lt~~---------~~~~~sP~wSPDG~~~~~~y~S~~~-g~~~I~~~~l~~g~~~~lt~~~g~~- 233 (428)
T PRK01029 165 GELWSVDYDGQNLRPLTQE---------HSLSITPTWMHIGSGFPYLYVSYKL-GVPKIFLGSLENPAGKKILALQGNQ- 233 (428)
T ss_pred ceEEEEcCCCCCceEcccC---------CCCcccceEccCCCceEEEEEEccC-CCceEEEEECCCCCceEeecCCCCc-
Confidence 5799999999999988542 334567999999985 55676665 3578999999999999998754321
Q ss_pred eeccCccccCCCCCccCCCc--EEEEEccCCccEEEEE--eCCC---ceeecccccCeEE-EEEEeEeecCCEEEEEEcC
Q 008873 137 VNLHDCFTPLDKGVTKYSGG--FIWASEKTGFRHLYLH--DING---TCLGPITEGDWMV-EQIVGVNEASGQVYFTGTL 208 (550)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~--~~~~s~~~g~~~l~~~--~~~~---~~~~~lT~~~~~~-~~~~~~s~dg~~l~f~~~~ 208 (550)
+.| .|+||+ ++|.+++.|..+||+. ++++ ++.++||.+.... ..+ .|||||++|+|.+++
T Consensus 234 ------~~p-----~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p-~wSPDG~~Laf~s~~ 301 (428)
T PRK01029 234 ------LMP-----TFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNP-SFSPDGTRLVFVSNK 301 (428)
T ss_pred ------cce-----EECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCe-EECCCCCEEEEEECC
Confidence 111 456665 8888888888888885 4433 4678898764332 334 599999999999886
Q ss_pred CCCceeEEEEEEeCCCCCCCCCCCeeeCCCCc-eEEEEECCCCCEEEEeecCCCCCCEEEEEEcCCCceeEeccCC
Q 008873 209 DGPLESHLYCAKLYPDWNHTLEAPVKLTNGKG-KHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLYEQ 283 (550)
Q Consensus 209 ~~~~~~~l~~v~~~~~g~~~~~~~~~lt~~~~-~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~~~~~l~~~ 283 (550)
++. .+||.+++...+. .+++++...+ ...+.|||||+.|+|+.... ...+|+++++.+++ .+.++..
T Consensus 302 ~g~--~~ly~~~~~~~g~----~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~-g~~~I~v~dl~~g~-~~~Lt~~ 369 (428)
T PRK01029 302 DGR--PRIYIMQIDPEGQ----SPRLLTKKYRNSSCPAWSPDGKKIAFCSVIK-GVRQICVYDLATGR-DYQLTTS 369 (428)
T ss_pred CCC--ceEEEEECccccc----ceEEeccCCCCccceeECCCCCEEEEEEcCC-CCcEEEEEECCCCC-eEEccCC
Confidence 553 6899988721222 4677876543 45678999999999987643 34689999998776 4666643
No 41
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.80 E-value=5.1e-17 Score=161.23 Aligned_cols=192 Identities=13% Similarity=0.078 Sum_probs=142.6
Q ss_pred eEEEEEEECCCCceEEEEcccCCCCCCCCCceeEEEEECCCCeE-EEEEEecCCCceEEEEEECCCCceEEEEEeecCce
Q 008873 58 KVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNIL-TAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSW 136 (550)
Q Consensus 58 ~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~wspDg~~-i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~ 136 (550)
..+|++.|.++...++++.. . ....|+|||||+. +++.+.+. ...+||++|+.+|+.++|+...+..
T Consensus 168 ~~~l~~~d~dg~~~~~~~~~---------~-~~~~p~wSpDG~~~i~y~s~~~-~~~~Iyv~dl~tg~~~~lt~~~g~~- 235 (419)
T PRK04043 168 KSNIVLADYTLTYQKVIVKG---------G-LNIFPKWANKEQTAFYYTSYGE-RKPTLYKYNLYTGKKEKIASSQGML- 235 (419)
T ss_pred cceEEEECCCCCceeEEccC---------C-CeEeEEECCCCCcEEEEEEccC-CCCEEEEEECCCCcEEEEecCCCcE-
Confidence 36899999999887777431 2 5668999999994 77666654 2458999999999999998633211
Q ss_pred eeccCccccCCCCCccCCCc--EEEEEccCCccEEEEEeCCCceeecccccCeEEEEEEeEeecCCEEEEEEcCCCCcee
Q 008873 137 VNLHDCFTPLDKGVTKYSGG--FIWASEKTGFRHLYLHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLES 214 (550)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~--~~~~s~~~g~~~l~~~~~~~~~~~~lT~~~~~~~~~~~~s~dg~~l~f~~~~~~~~~~ 214 (550)
..+ .|++|+ +++...++|..+||++++++++.++||.+......+ .|+|||++|+|++++.+. .
T Consensus 236 --~~~---------~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~~~LT~~~~~d~~p-~~SPDG~~I~F~Sdr~g~--~ 301 (419)
T PRK04043 236 --VVS---------DVSKDGSKLLLTMAPKGQPDIYLYDTNTKTLTQITNYPGIDVNG-NFVEDDKRIVFVSDRLGY--P 301 (419)
T ss_pred --Eee---------EECCCCCEEEEEEccCCCcEEEEEECCCCcEEEcccCCCccCcc-EECCCCCEEEEEECCCCC--c
Confidence 001 245554 778777788899999999999999999876422333 599999999999987653 7
Q ss_pred EEEEEEeCCCCCCCCCCCeeeCCCCceEEEEECCCCCEEEEeecCCC-----CCCEEEEEEcCCCceeEeccCC
Q 008873 215 HLYCAKLYPDWNHTLEAPVKLTNGKGKHVAVLDHNMRNFVDFHDSLD-----SPPRILLCSLQDGSLVLPLYEQ 283 (550)
Q Consensus 215 ~l~~v~~~~~g~~~~~~~~~lt~~~~~~~~~~s~dg~~l~~~~s~~~-----~p~~l~~~~~~~g~~~~~l~~~ 283 (550)
+||.+++ +++ +.++++..... ...|||||++++++..... ...+|+++++.+++ .+.|+..
T Consensus 302 ~Iy~~dl--~~g----~~~rlt~~g~~-~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~-~~~LT~~ 367 (419)
T PRK04043 302 NIFMKKL--NSG----SVEQVVFHGKN-NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDY-IRRLTAN 367 (419)
T ss_pred eEEEEEC--CCC----CeEeCccCCCc-CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCC-eEECCCC
Confidence 9999999 444 56677764323 4589999999999876532 23689999997776 5777763
No 42
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.78 E-value=1.4e-16 Score=160.15 Aligned_cols=192 Identities=17% Similarity=0.144 Sum_probs=143.6
Q ss_pred eEEEEEEECCCCceEEEEcccCCCCCCCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCcee
Q 008873 58 KVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWV 137 (550)
Q Consensus 58 ~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~~ 137 (550)
..+||++|.+++..++++.. ...+..|+|||||+.|+|...+. ...+||++++++|+.+.|+......
T Consensus 178 ~~~l~~~d~dg~~~~~lt~~---------~~~~~~p~wSPDG~~la~~s~~~-g~~~i~i~dl~~G~~~~l~~~~~~~-- 245 (429)
T PRK03629 178 PYELRVSDYDGYNQFVVHRS---------PQPLMSPAWSPDGSKLAYVTFES-GRSALVIQTLANGAVRQVASFPRHN-- 245 (429)
T ss_pred ceeEEEEcCCCCCCEEeecC---------CCceeeeEEcCCCCEEEEEEecC-CCcEEEEEECCCCCeEEccCCCCCc--
Confidence 35899999999888877542 44678899999999998886543 3468999999999998887543221
Q ss_pred eccCccccCCCCCccCCCc--EEEEEccCCccEEEEEeCCCceeecccccCeEEEEEEeEeecCCEEEEEEcCCCCceeE
Q 008873 138 NLHDCFTPLDKGVTKYSGG--FIWASEKTGFRHLYLHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESH 215 (550)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~--~~~~s~~~g~~~l~~~~~~~~~~~~lT~~~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~ 215 (550)
.. +.|++|+ ++|.+.+.|..+||++++++++.++||.+...+..+ .|+|||+.|+|.+++.+. .+
T Consensus 246 -----~~-----~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~lt~~~~~~~~~-~wSPDG~~I~f~s~~~g~--~~ 312 (429)
T PRK03629 246 -----GA-----PAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEP-TWFPDSQNLAYTSDQAGR--PQ 312 (429)
T ss_pred -----CC-----eEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEccCCCCCcCce-EECCCCCEEEEEeCCCCC--ce
Confidence 01 1355655 677777788889999999999999999876544445 499999999999987543 68
Q ss_pred EEEEEeCCCCCCCCCCCeeeCCCCc-eEEEEECCCCCEEEEeecCCCCCCEEEEEEcCCCceeEeccC
Q 008873 216 LYCAKLYPDWNHTLEAPVKLTNGKG-KHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLYE 282 (550)
Q Consensus 216 l~~v~~~~~g~~~~~~~~~lt~~~~-~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~~~~~l~~ 282 (550)
||.+++ +++ ..++++...+ ...+.|||||++|+++.... ...+++++++.+++ .+.|+.
T Consensus 313 Iy~~d~--~~g----~~~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~-g~~~I~~~dl~~g~-~~~Lt~ 372 (429)
T PRK03629 313 VYKVNI--NGG----APQRITWEGSQNQDADVSSDGKFMVMVSSNG-GQQHIAKQDLATGG-VQVLTD 372 (429)
T ss_pred EEEEEC--CCC----CeEEeecCCCCccCEEECCCCCEEEEEEccC-CCceEEEEECCCCC-eEEeCC
Confidence 999998 443 4567765433 34568999999999886543 34689999997776 566664
No 43
>COG3458 Acetyl esterase (deacetylase) [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.78 E-value=3e-18 Score=149.53 Aligned_cols=217 Identities=21% Similarity=0.178 Sum_probs=154.0
Q ss_pred CeEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCc
Q 008873 298 PDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRG 377 (550)
Q Consensus 298 ~~~~~~~~~~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~ 377 (550)
.-.++|++.+|..|.+|+..|...+ ++.|+||..||..+... .|.. .-.++..||+|+.+|.||.|++.
T Consensus 56 ~ydvTf~g~~g~rI~gwlvlP~~~~---~~~P~vV~fhGY~g~~g---~~~~-----~l~wa~~Gyavf~MdvRGQg~~~ 124 (321)
T COG3458 56 VYDVTFTGYGGARIKGWLVLPRHEK---GKLPAVVQFHGYGGRGG---EWHD-----MLHWAVAGYAVFVMDVRGQGSSS 124 (321)
T ss_pred EEEEEEeccCCceEEEEEEeecccC---CccceEEEEeeccCCCC---Cccc-----cccccccceeEEEEecccCCCcc
Confidence 3568889999999999999998753 78999999999655543 2221 23467899999999999988763
Q ss_pred hh----hHH-H-----Hhhcc-------CCCchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhCCCeeEEE
Q 008873 378 LK----FEA-S-----IKHNC-------GRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCA 440 (550)
Q Consensus 378 ~~----~~~-~-----~~~~~-------~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~ 440 (550)
.+ ... . +.+.. -..-+.|...+++.+...+.+|.+||++.|+|.||.+++.+++.. .+++++
T Consensus 125 ~dt~~~p~~~s~pG~mtrGilD~kd~yyyr~v~~D~~~ave~~~sl~~vde~Ri~v~G~SqGGglalaaaal~-~rik~~ 203 (321)
T COG3458 125 QDTADPPGGPSDPGFMTRGILDRKDTYYYRGVFLDAVRAVEILASLDEVDEERIGVTGGSQGGGLALAAAALD-PRIKAV 203 (321)
T ss_pred ccCCCCCCCCcCCceeEeecccCCCceEEeeehHHHHHHHHHHhccCccchhheEEeccccCchhhhhhhhcC-hhhhcc
Confidence 21 000 0 00111 112478999999999999999999999999999999999999864 567999
Q ss_pred EEcCCcCC-ccccc-----chhhh--hcc--CCCCC--CccccccCChhhhhhcCCCcEEEEecCCCCCCChHHHHHHHH
Q 008873 441 VSGAPVTS-WDGYD-----TFYTE--KYM--GLPSE--DPVGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLIN 508 (550)
Q Consensus 441 v~~~~~~~-~~~~~-----~~~~~--~~~--g~~~~--~~~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~ 508 (550)
++..|+.. +...- ..|.+ +|+ ..|.+ ..+.+.-.+..+.+.++|+|+|+..|-.|++|||..-..+++
T Consensus 204 ~~~~Pfl~df~r~i~~~~~~~ydei~~y~k~h~~~e~~v~~TL~yfD~~n~A~RiK~pvL~svgL~D~vcpPstqFA~yN 283 (321)
T COG3458 204 VADYPFLSDFPRAIELATEGPYDEIQTYFKRHDPKEAEVFETLSYFDIVNLAARIKVPVLMSVGLMDPVCPPSTQFAAYN 283 (321)
T ss_pred cccccccccchhheeecccCcHHHHHHHHHhcCchHHHHHHHHhhhhhhhHHHhhccceEEeecccCCCCCChhhHHHhh
Confidence 99888753 22110 01111 121 11111 112223345566788899999999999999999998888888
Q ss_pred HHHHcCCCeEEEEcCCCCCcC
Q 008873 509 ALVAARKPYEILIFPDERHMP 529 (550)
Q Consensus 509 ~l~~~~~~~~~~~~p~~~H~~ 529 (550)
++ -.+.++.+||.-+|.-
T Consensus 284 ~l---~~~K~i~iy~~~aHe~ 301 (321)
T COG3458 284 AL---TTSKTIEIYPYFAHEG 301 (321)
T ss_pred cc---cCCceEEEeecccccc
Confidence 87 3456778888878864
No 44
>PRK10985 putative hydrolase; Provisional
Probab=99.77 E-value=2.1e-17 Score=160.39 Aligned_cols=235 Identities=16% Similarity=0.164 Sum_probs=147.2
Q ss_pred CCeEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCC
Q 008873 297 PPDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARR 376 (550)
Q Consensus 297 ~~~~~~~~~~~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~ 376 (550)
..+...++..||..+.......... ..+.|+||++||.++... .. ....+++.|+++||.|+++|+||+|++
T Consensus 30 ~~~~~~~~~~dg~~~~l~w~~~~~~---~~~~p~vll~HG~~g~~~--~~---~~~~~~~~l~~~G~~v~~~d~rG~g~~ 101 (324)
T PRK10985 30 TPYWQRLELPDGDFVDLAWSEDPAQ---ARHKPRLVLFHGLEGSFN--SP---YAHGLLEAAQKRGWLGVVMHFRGCSGE 101 (324)
T ss_pred CcceeEEECCCCCEEEEecCCCCcc---CCCCCEEEEeCCCCCCCc--CH---HHHHHHHHHHHCCCEEEEEeCCCCCCC
Confidence 3445557778887665443221111 135689999999765432 11 123346788899999999999999866
Q ss_pred chhhHHHHhhccCCCchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhCCC--eeEEEEEcCCcCCccc---
Q 008873 377 GLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPD--VFQCAVSGAPVTSWDG--- 451 (550)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~--~~~~~v~~~~~~~~~~--- 451 (550)
....... ......+|+..+++++.++. ...+++++||||||.+++.+++++++ .+++++++++..+...
T Consensus 102 ~~~~~~~----~~~~~~~D~~~~i~~l~~~~--~~~~~~~vG~S~GG~i~~~~~~~~~~~~~~~~~v~i~~p~~~~~~~~ 175 (324)
T PRK10985 102 PNRLHRI----YHSGETEDARFFLRWLQREF--GHVPTAAVGYSLGGNMLACLLAKEGDDLPLDAAVIVSAPLMLEACSY 175 (324)
T ss_pred ccCCcce----ECCCchHHHHHHHHHHHHhC--CCCCEEEEEecchHHHHHHHHHhhCCCCCccEEEEEcCCCCHHHHHH
Confidence 4321111 11224789999999998763 34679999999999988887776643 3777777777655320
Q ss_pred ---------ccchhh-----------hhccCC-CC--------------------------CCccccccCChhhhhhcCC
Q 008873 452 ---------YDTFYT-----------EKYMGL-PS--------------------------EDPVGYEYSSVMHHVHKMK 484 (550)
Q Consensus 452 ---------~~~~~~-----------~~~~g~-~~--------------------------~~~~~~~~~~~~~~~~~i~ 484 (550)
+...+. ..+.+. +. ...+.|...+....+.+++
T Consensus 176 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd~~~~~~~~g~~~~~~~y~~~~~~~~l~~i~ 255 (324)
T PRK10985 176 RMEQGFSRVYQRYLLNLLKANAARKLAAYPGTLPINLAQLKSVRRLREFDDLITARIHGFADAIDYYRQCSALPLLNQIR 255 (324)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHhcCCcHHHHhhhheeccCCCCCHHHHHHHCChHHHHhCCC
Confidence 100000 000010 00 0012233345556678899
Q ss_pred CcEEEEecCCCCCCChHHHHHHHHHHHHcCCCeEEEEcCCCCCcCCC----CCcHHHHHHHHHHHHHHh
Q 008873 485 GKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRR----HRDRIYMEERIWEFIERT 549 (550)
Q Consensus 485 ~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p~~~H~~~~----~~~~~~~~~~~~~fl~~~ 549 (550)
+|+|+++|++|..++++....+. +...++++.+++++||...- ........+.+.+||...
T Consensus 256 ~P~lii~g~~D~~~~~~~~~~~~----~~~~~~~~~~~~~~GH~~~~~g~~~~~~~w~~~~~~~~~~~~ 320 (324)
T PRK10985 256 KPTLIIHAKDDPFMTHEVIPKPE----SLPPNVEYQLTEHGGHVGFVGGTLLKPQMWLEQRIPDWLTTY 320 (324)
T ss_pred CCEEEEecCCCCCCChhhChHHH----HhCCCeEEEECCCCCceeeCCCCCCCCCccHHHHHHHHHHHh
Confidence 99999999999999877555442 22356888999999996421 112235567788888654
No 45
>TIGR00976 /NonD putative hydrolase, CocE/NonD family. This model represents a protein subfamily that includes the cocaine esterase CocE, several glutaryl-7-ACA acylases, and the putative diester hydrolase NonD of Streptomyces griseus (all hydrolases). This family shows extensive, low-level similarity to a family of xaa-pro dipeptidyl-peptidases, and local similarity by PSI-BLAST to many other hydrolases.
Probab=99.77 E-value=2.6e-17 Score=170.81 Aligned_cols=230 Identities=18% Similarity=0.227 Sum_probs=153.0
Q ss_pred EcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCchhhHHH
Q 008873 304 QANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEAS 383 (550)
Q Consensus 304 ~~~~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~~~~~~ 383 (550)
+..||.+|.+.++.|.+. ++.|+||++||....... .+... ....+.|+++||+|+++|+||+|.++..+..
T Consensus 2 ~~~DG~~L~~~~~~P~~~----~~~P~Il~~~gyg~~~~~--~~~~~-~~~~~~l~~~Gy~vv~~D~RG~g~S~g~~~~- 73 (550)
T TIGR00976 2 PMRDGTRLAIDVYRPAGG----GPVPVILSRTPYGKDAGL--RWGLD-KTEPAWFVAQGYAVVIQDTRGRGASEGEFDL- 73 (550)
T ss_pred cCCCCCEEEEEEEecCCC----CCCCEEEEecCCCCchhh--ccccc-cccHHHHHhCCcEEEEEeccccccCCCceEe-
Confidence 567999999999999753 578999999986543210 01111 1135788999999999999999988765321
Q ss_pred HhhccCCCchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCcccc---c-------
Q 008873 384 IKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGY---D------- 453 (550)
Q Consensus 384 ~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~~~---~------- 453 (550)
++..+.+|+.++++|+.++++.+ .+|+++|+||||++++.++..+|+.++|++..++..+.... .
T Consensus 74 ----~~~~~~~D~~~~i~~l~~q~~~~-~~v~~~G~S~GG~~a~~~a~~~~~~l~aiv~~~~~~d~~~~~~~~g~~~~~~ 148 (550)
T TIGR00976 74 ----LGSDEAADGYDLVDWIAKQPWCD-GNVGMLGVSYLAVTQLLAAVLQPPALRAIAPQEGVWDLYRDIAFPGALRLDV 148 (550)
T ss_pred ----cCcccchHHHHHHHHHHhCCCCC-CcEEEEEeChHHHHHHHHhccCCCceeEEeecCcccchhHhhccCCeeccch
Confidence 22456899999999999998766 69999999999999999999889999999998887663210 0
Q ss_pred --chhh----hhccCCCC-----------------------------------------------CCccccccCChhhhh
Q 008873 454 --TFYT----EKYMGLPS-----------------------------------------------EDPVGYEYSSVMHHV 480 (550)
Q Consensus 454 --~~~~----~~~~g~~~-----------------------------------------------~~~~~~~~~~~~~~~ 480 (550)
.+.. ....+.+. ...+.+...+....+
T Consensus 149 ~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~ 228 (550)
T TIGR00976 149 LLGWWALLATDSMRPRADDRPPRYAAAARLAQSYDDCQTALSHTPRSSVLALDRFIGWWIQVVDDDYDESWVSISLWRDL 228 (550)
T ss_pred hHHHHHhhccccccccccccccchHHHHHHhhhhhhHHHHHhcCCccccccccccchhhhhccCCCCChhhccCchhhHh
Confidence 0000 00000000 000111223344467
Q ss_pred hcCCCcEEEEecCCCCCCChHHHHHHHHHHHHcCCCeEEEEcCCCCCcCCC--------CCcHHHHHH--HHHHHHHHhC
Q 008873 481 HKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRR--------HRDRIYMEE--RIWEFIERTL 550 (550)
Q Consensus 481 ~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p~~~H~~~~--------~~~~~~~~~--~~~~fl~~~l 550 (550)
+++++|+|++.|-.|. ....+.+.++++.+.+ +.++++=|. .|.... ......... ..++||++||
T Consensus 229 ~~i~vP~l~~~gw~D~--~~~g~~~~~~~~~~~~-~~~lilGpw-~H~~~~~~~~~~~~g~~~~~~~~~~~~~~wfD~~L 304 (550)
T TIGR00976 229 GGSDVPTLVTGGWYDN--HSRGSIRLFLAVHRGG-AQRLVVGPW-THSGLGGRVGDGNYGMAALSWVDEAEQLAFFDRHL 304 (550)
T ss_pred cCCCCCEEEeCcccCC--CCchHHHHHHHHhhcC-CceEEEccC-CCCCcccccCCCccCccccccchhhhhHHHHHHHh
Confidence 7899999999999994 5567778888876654 456665454 575110 001111122 4689999886
No 46
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=99.77 E-value=1.7e-17 Score=163.06 Aligned_cols=207 Identities=14% Similarity=0.070 Sum_probs=153.8
Q ss_pred eEEEcCCCCeEEEEEEeCCCCCeEEEeecCCCCCCCCCcccccCCCCCCCCCeEEEEEEECCCCceEEEEcccCCCCCCC
Q 008873 6 GYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQNY 85 (550)
Q Consensus 6 ~~~wSPdg~~lay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~ 85 (550)
...|||||+.|+|+.+..++. .+++++++++++..++. .
T Consensus 197 ~p~ws~~~~~~~y~~f~~~~~--------------------------------~~i~~~~l~~g~~~~i~---------~ 235 (425)
T COG0823 197 TPAWSPDGKKLAYVSFELGGC--------------------------------PRIYYLDLNTGKRPVIL---------N 235 (425)
T ss_pred ccccCcCCCceEEEEEecCCC--------------------------------ceEEEEeccCCccceee---------c
Confidence 357999999999997654331 36899999998776552 2
Q ss_pred CCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCceeeccCccccCCCCCccCCCc--EEEEEcc
Q 008873 86 DEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYSGG--FIWASEK 163 (550)
Q Consensus 86 ~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~s~~ 163 (550)
.......|+|||||+.++|+..|. ...+||++|+.+++.++|+...+.. ..| +|++|+ ++|.|++
T Consensus 236 ~~g~~~~P~fspDG~~l~f~~~rd-g~~~iy~~dl~~~~~~~Lt~~~gi~---~~P---------s~spdG~~ivf~Sdr 302 (425)
T COG0823 236 FNGNNGAPAFSPDGSKLAFSSSRD-GSPDIYLMDLDGKNLPRLTNGFGIN---TSP---------SWSPDGSKIVFTSDR 302 (425)
T ss_pred cCCccCCccCCCCCCEEEEEECCC-CCccEEEEcCCCCcceecccCCccc---cCc---------cCCCCCCEEEEEeCC
Confidence 345566789999999999999888 5678999999999988877654321 122 455555 9999999
Q ss_pred CCccEEEEEeCCCceeecccccCeEEEEEEeEeecCCEEEEEEcCCCCceeEEEEEEeCCCCCCCCCCCeeeCCCCceEE
Q 008873 164 TGFRHLYLHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTNGKGKHV 243 (550)
Q Consensus 164 ~g~~~l~~~~~~~~~~~~lT~~~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~~v~~~~~g~~~~~~~~~lt~~~~~~~ 243 (550)
.|..+||++++++++.+++|....... ...|||||++|+|.....+ ...+...++. .+. ..+.++.......
T Consensus 303 ~G~p~I~~~~~~g~~~~riT~~~~~~~-~p~~SpdG~~i~~~~~~~g--~~~i~~~~~~-~~~----~~~~lt~~~~~e~ 374 (425)
T COG0823 303 GGRPQIYLYDLEGSQVTRLTFSGGGNS-NPVWSPDGDKIVFESSSGG--QWDIDKNDLA-SGG----KIRILTSTYLNES 374 (425)
T ss_pred CCCcceEEECCCCCceeEeeccCCCCc-CccCCCCCCEEEEEeccCC--ceeeEEeccC-CCC----cEEEccccccCCC
Confidence 999999999999999999997532222 3459999999999985433 2667776763 222 3566666555667
Q ss_pred EEECCCCCEEEEeecCCCCCCEEEEEEcCCCce
Q 008873 244 AVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSL 276 (550)
Q Consensus 244 ~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~~ 276 (550)
.+++++|+.+++..... .-+.++.+++ +++.
T Consensus 375 ps~~~ng~~i~~~s~~~-~~~~l~~~s~-~g~~ 405 (425)
T COG0823 375 PSWAPNGRMIMFSSGQG-GGSVLSLVSL-DGRV 405 (425)
T ss_pred CCcCCCCceEEEeccCC-CCceEEEeec-ccee
Confidence 78999999999987776 4457777776 4543
No 47
>PF02129 Peptidase_S15: X-Pro dipeptidyl-peptidase (S15 family); InterPro: IPR000383 This entry represents a domain found peptidases Xaa-Pro dipeptidyl-peptidase and glutaryl-7-aminocephalosporanic-acid acylase, which belong to MEROPS peptidase families S15 and S45 respectively []. It is also found in hydrolases from the CocE/NonD family. Cocaine esterase (CocE) hydrolyzes cocaine endowing the bacteria with the ability to utilise cocaine as a sole source of carbon and energy []. ; GO: 0004177 aminopeptidase activity, 0006508 proteolysis; PDB: 1LNS_A 3PUI_A 3PUH_B 1JU3_A 3I2I_A 3I2G_A 1JU4_A 3I2K_A 3IDA_A 3I2H_A ....
Probab=99.76 E-value=6e-18 Score=159.80 Aligned_cols=212 Identities=23% Similarity=0.273 Sum_probs=141.2
Q ss_pred CCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeeccc---ccccchhHhHHHHhCCcEEEEECCCCCCCCchhhHHH
Q 008873 307 DGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDS---WINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEAS 383 (550)
Q Consensus 307 ~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~---~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~~~~~~ 383 (550)
||++|.+.+|+| +. ...+++|+||..|+.......... ...........++++||+||..|.||.|.|+..+...
T Consensus 1 DGv~L~adv~~P-~~-~~~~~~P~il~~tpY~~~~~~~~~~~~~~~~~~~~~~~~~~~GY~vV~~D~RG~g~S~G~~~~~ 78 (272)
T PF02129_consen 1 DGVRLAADVYRP-GA-DGGGPFPVILTRTPYGKGDQTASDLAGANPGPPSARRPFAERGYAVVVQDVRGTGGSEGEFDPM 78 (272)
T ss_dssp TS-EEEEEEEEE----TTSSSEEEEEEEESSTCTC-HHHHHHTTCHHSHGGGHHHHHTT-EEEEEE-TTSTTS-S-B-TT
T ss_pred CCCEEEEEEEec-CC-CCCCcccEEEEccCcCCCCCcccchhhhhcccchhHHHHHhCCCEEEEECCcccccCCCccccC
Confidence 789999999999 22 223799999999985532110000 0001111223499999999999999999998877643
Q ss_pred HhhccCCCchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCccc-c-------cc-
Q 008873 384 IKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDG-Y-------DT- 454 (550)
Q Consensus 384 ~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~~-~-------~~- 454 (550)
...+.+|..++|+|+.++++.+ .||+++|.||+|+.++.+|...|..++|++...+..|+.. . ..
T Consensus 79 -----~~~e~~D~~d~I~W~~~Qpws~-G~VGm~G~SY~G~~q~~~A~~~~p~LkAi~p~~~~~d~~~~~~~~gG~~~~~ 152 (272)
T PF02129_consen 79 -----SPNEAQDGYDTIEWIAAQPWSN-GKVGMYGISYGGFTQWAAAARRPPHLKAIVPQSGWSDLYRDSIYPGGAFRLG 152 (272)
T ss_dssp -----SHHHHHHHHHHHHHHHHCTTEE-EEEEEEEETHHHHHHHHHHTTT-TTEEEEEEESE-SBTCCTSSEETTEEBCC
T ss_pred -----ChhHHHHHHHHHHHHHhCCCCC-CeEEeeccCHHHHHHHHHHhcCCCCceEEEecccCCcccccchhcCCccccc
Confidence 3345899999999999998754 6999999999999999999988888999999888776532 0 00
Q ss_pred ---hh------hhhccCC-------------------------------------CCCCccccccCChhhhhhcCCCcEE
Q 008873 455 ---FY------TEKYMGL-------------------------------------PSEDPVGYEYSSVMHHVHKMKGKLL 488 (550)
Q Consensus 455 ---~~------~~~~~g~-------------------------------------~~~~~~~~~~~~~~~~~~~i~~P~l 488 (550)
.+ ....... .....+.|.+.++...++++++|+|
T Consensus 153 ~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~i~vP~l 232 (272)
T PF02129_consen 153 FFAGWEDLQSQQEDPQSRPAPDRDYLRERARYEALGDSPLGRLPRDPPYWDEWLDHPPYDPFWQERSPSERLDKIDVPVL 232 (272)
T ss_dssp HHHHHHHHHHHHHHHTCCCCSSSHHHHHHHHHHCHHHHHHHHCHGGTHHHHHHHHT-SSSHHHHTTBHHHHHGG--SEEE
T ss_pred chhHHHHHHHHhhcccCCCchhhhhhhhhhhhhhhhhHHHhhhccccHHHHHHHhCCCcCHHHHhCChHHHHhhCCCCEE
Confidence 01 0000000 0111233445566667899999999
Q ss_pred EEecCCCCCCChHHHHHHHHHHHHcC-CCeEEEEcCCCCCc
Q 008873 489 LVHGMIDENVHFRHTARLINALVAAR-KPYEILIFPDERHM 528 (550)
Q Consensus 489 ii~G~~D~~v~~~~~~~~~~~l~~~~-~~~~~~~~p~~~H~ 528 (550)
+++|..|.... ..+.+.+++|+..+ .+.++++-|. +|+
T Consensus 233 ~v~Gw~D~~~~-~~~~~~~~~l~~~~~~~~~Liigpw-~H~ 271 (272)
T PF02129_consen 233 IVGGWYDTLFL-RGALRAYEALRAPGSKPQRLIIGPW-THG 271 (272)
T ss_dssp EEEETTCSSTS-HHHHHHHHHHCTTSTC-EEEEEESE-STT
T ss_pred EecccCCcccc-hHHHHHHHHhhcCCCCCCEEEEeCC-CCC
Confidence 99999997777 89999999998887 6678877765 564
No 48
>PRK00870 haloalkane dehalogenase; Provisional
Probab=99.76 E-value=5.9e-17 Score=156.27 Aligned_cols=233 Identities=15% Similarity=0.124 Sum_probs=143.0
Q ss_pred hhcCCCCCCeEEEEEcCCCcE--EEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEE
Q 008873 290 IKRLQLEPPDIVQIQANDGTV--LYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWK 367 (550)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~g~~--l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~ 367 (550)
++.+.+ ....+.+...+|.. +++... +. ...|.||++||.+.... .|......|+++||.|++
T Consensus 14 ~~~~~~-~~~~~~~~~~~~~~~~i~y~~~---G~----~~~~~lvliHG~~~~~~-------~w~~~~~~L~~~gy~vi~ 78 (302)
T PRK00870 14 LPDYPF-APHYVDVDDGDGGPLRMHYVDE---GP----ADGPPVLLLHGEPSWSY-------LYRKMIPILAAAGHRVIA 78 (302)
T ss_pred CcCCCC-CceeEeecCCCCceEEEEEEec---CC----CCCCEEEEECCCCCchh-------hHHHHHHHHHhCCCEEEE
Confidence 334444 44566666555654 443322 21 12367899999765432 345567788888999999
Q ss_pred ECCCCCCCCchhhHHHHhhccCCCchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcC
Q 008873 368 LDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVT 447 (550)
Q Consensus 368 ~d~rG~g~~~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~ 447 (550)
+|.||+|.+...... ....++++.+.+..+.++ ++.+++.|+||||||.++..++.++|++++++++.++..
T Consensus 79 ~Dl~G~G~S~~~~~~------~~~~~~~~a~~l~~~l~~--l~~~~v~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~ 150 (302)
T PRK00870 79 PDLIGFGRSDKPTRR------EDYTYARHVEWMRSWFEQ--LDLTDVTLVCQDWGGLIGLRLAAEHPDRFARLVVANTGL 150 (302)
T ss_pred ECCCCCCCCCCCCCc------ccCCHHHHHHHHHHHHHH--cCCCCEEEEEEChHHHHHHHHHHhChhheeEEEEeCCCC
Confidence 999999987532110 112344544444444443 244689999999999999999999999999999887532
Q ss_pred Cccc------ccch---------------hh------------hhccCCCCCCc---c---cccc---C---C-------
Q 008873 448 SWDG------YDTF---------------YT------------EKYMGLPSEDP---V---GYEY---S---S------- 475 (550)
Q Consensus 448 ~~~~------~~~~---------------~~------------~~~~g~~~~~~---~---~~~~---~---~------- 475 (550)
.... +..+ .. ..+. .+.... . .+.. . .
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (302)
T PRK00870 151 PTGDGPMPDAFWAWRAFSQYSPVLPVGRLVNGGTVRDLSDAVRAAYD-APFPDESYKAGARAFPLLVPTSPDDPAVAANR 229 (302)
T ss_pred CCccccchHHHhhhhcccccCchhhHHHHhhccccccCCHHHHHHhh-cccCChhhhcchhhhhhcCCCCCCCcchHHHH
Confidence 1000 0000 00 0000 000000 0 0000 0 0
Q ss_pred -hhhhhhcCCCcEEEEecCCCCCCChHHHHHHHHHHHHcCCCeEEEEcCCCCCcCCCCCcHHHHHHHHHHHHHHh
Q 008873 476 -VMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIERT 549 (550)
Q Consensus 476 -~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p~~~H~~~~~~~~~~~~~~~~~fl~~~ 549 (550)
....+.++++|+|+++|++|..+|... .++.+.+.. .....+.++++++|.+ ..++...+.+.+.+||+++
T Consensus 230 ~~~~~l~~i~~P~lii~G~~D~~~~~~~-~~~~~~~~~-~~~~~~~~i~~~gH~~-~~e~p~~~~~~l~~fl~~~ 301 (302)
T PRK00870 230 AAWAVLERWDKPFLTAFSDSDPITGGGD-AILQKRIPG-AAGQPHPTIKGAGHFL-QEDSGEELAEAVLEFIRAT 301 (302)
T ss_pred HHHHhhhcCCCceEEEecCCCCcccCch-HHHHhhccc-ccccceeeecCCCccc-hhhChHHHHHHHHHHHhcC
Confidence 012356788999999999999999755 556555432 1123477899999997 5577789999999999875
No 49
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.76 E-value=1.6e-16 Score=160.64 Aligned_cols=192 Identities=15% Similarity=0.176 Sum_probs=142.2
Q ss_pred eEEEEEEECCCCceEEEEcccCCCCCCCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCcee
Q 008873 58 KVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWV 137 (550)
Q Consensus 58 ~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~~ 137 (550)
..+||++|.+++..++++. ....+..|+|||||+.|+|+..+.. ..+||++++++|+.++|+...+..
T Consensus 181 ~~~l~~~d~dg~~~~~lt~---------~~~~v~~p~wSpDG~~lay~s~~~g-~~~i~~~dl~~g~~~~l~~~~g~~-- 248 (435)
T PRK05137 181 IKRLAIMDQDGANVRYLTD---------GSSLVLTPRFSPNRQEITYMSYANG-RPRVYLLDLETGQRELVGNFPGMT-- 248 (435)
T ss_pred ceEEEEECCCCCCcEEEec---------CCCCeEeeEECCCCCEEEEEEecCC-CCEEEEEECCCCcEEEeecCCCcc--
Confidence 4689999999998888853 2446788999999999999876543 468999999999998887543221
Q ss_pred eccCccccCCCCCccCCCc--EEEEEccCCccEEEEEeCCCceeecccccCeEEEEEEeEeecCCEEEEEEcCCCCceeE
Q 008873 138 NLHDCFTPLDKGVTKYSGG--FIWASEKTGFRHLYLHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESH 215 (550)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~--~~~~s~~~g~~~l~~~~~~~~~~~~lT~~~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~ 215 (550)
..+ .|++|+ +++.+.++|..+||++++++++.++||.+......+ .|+|||++|+|.+++.+. .+
T Consensus 249 -----~~~-----~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~Lt~~~~~~~~~-~~spDG~~i~f~s~~~g~--~~ 315 (435)
T PRK05137 249 -----FAP-----RFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTTRLTDSPAIDTSP-SYSPDGSQIVFESDRSGS--PQ 315 (435)
T ss_pred -----cCc-----EECCCCCEEEEEEecCCCceEEEEECCCCceEEccCCCCccCce-eEcCCCCEEEEEECCCCC--Ce
Confidence 111 345554 777777788899999999999999999866433334 599999999999876553 68
Q ss_pred EEEEEeCCCCCCCCCCCeeeCCCCc-eEEEEECCCCCEEEEeecCCCCCCEEEEEEcCCCceeEeccC
Q 008873 216 LYCAKLYPDWNHTLEAPVKLTNGKG-KHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLYE 282 (550)
Q Consensus 216 l~~v~~~~~g~~~~~~~~~lt~~~~-~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~~~~~l~~ 282 (550)
||.+++ ++. ..++++...+ ...+.|||||+.|+++..... ...++++++.++. .+.++.
T Consensus 316 Iy~~d~--~g~----~~~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~-~~~i~~~d~~~~~-~~~lt~ 375 (435)
T PRK05137 316 LYVMNA--DGS----NPRRISFGGGRYSTPVWSPRGDLIAFTKQGGG-QFSIGVMKPDGSG-ERILTS 375 (435)
T ss_pred EEEEEC--CCC----CeEEeecCCCcccCeEECCCCCEEEEEEcCCC-ceEEEEEECCCCc-eEeccC
Confidence 999998 444 5677876543 455689999999998865433 3489999985444 455543
No 50
>TIGR03343 biphenyl_bphD 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase. Members of this family are 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase, or HOPD hydrolase, the BphD protein of biphenyl degradation. BphD acts on the product of ring meta-cleavage by BphC. Many species carrying bphC and bphD are capable of degrading polychlorinated biphenyls as well as biphenyl itself.
Probab=99.76 E-value=2.9e-17 Score=157.05 Aligned_cols=201 Identities=16% Similarity=0.192 Sum_probs=129.8
Q ss_pred eEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCchhhHHHHhhccCCCchHHHHHHHHHHHHcCC
Q 008873 329 KTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGL 408 (550)
Q Consensus 329 P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~ 408 (550)
|.||++||.+.... .|...+ .....+.+.||.|+++|+||+|.+...... ........+|+.+.++.+
T Consensus 31 ~~ivllHG~~~~~~---~~~~~~-~~~~~l~~~~~~vi~~D~~G~G~S~~~~~~---~~~~~~~~~~l~~~l~~l----- 98 (282)
T TIGR03343 31 EAVIMLHGGGPGAG---GWSNYY-RNIGPFVDAGYRVILKDSPGFNKSDAVVMD---EQRGLVNARAVKGLMDAL----- 98 (282)
T ss_pred CeEEEECCCCCchh---hHHHHH-HHHHHHHhCCCEEEEECCCCCCCCCCCcCc---ccccchhHHHHHHHHHHc-----
Confidence 57899999755432 232111 123456678999999999999987542110 000111244555544443
Q ss_pred CCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCccc-c--------cchh-------h---hhcc-----CCC
Q 008873 409 AKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDG-Y--------DTFY-------T---EKYM-----GLP 464 (550)
Q Consensus 409 ~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~~-~--------~~~~-------~---~~~~-----g~~ 464 (550)
+.+++.++||||||++++.++.++|++++++|+.+|...... . ...+ . ..++ ...
T Consensus 99 -~~~~~~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (282)
T TIGR03343 99 -DIEKAHLVGNSMGGATALNFALEYPDRIGKLILMGPGGLGPSLFAPMPMEGIKLLFKLYAEPSYETLKQMLNVFLFDQS 177 (282)
T ss_pred -CCCCeeEEEECchHHHHHHHHHhChHhhceEEEECCCCCCccccccCchHHHHHHHHHhcCCCHHHHHHHHhhCccCcc
Confidence 557999999999999999999999999999999876421100 0 0000 0 0000 000
Q ss_pred C--------------CCcc---c---------cccCChhhhhhcCCCcEEEEecCCCCCCChHHHHHHHHHHHHcCCCeE
Q 008873 465 S--------------EDPV---G---------YEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYE 518 (550)
Q Consensus 465 ~--------------~~~~---~---------~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~ 518 (550)
. ..+. . +...+....+.++++|+|+++|++|..+++..+.++.+.+ .+++
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~Pvlli~G~~D~~v~~~~~~~~~~~~----~~~~ 253 (282)
T TIGR03343 178 LITEELLQGRWENIQRQPEHLKNFLISSQKAPLSTWDVTARLGEIKAKTLVTWGRDDRFVPLDHGLKLLWNM----PDAQ 253 (282)
T ss_pred cCcHHHHHhHHHHhhcCHHHHHHHHHhccccccccchHHHHHhhCCCCEEEEEccCCCcCCchhHHHHHHhC----CCCE
Confidence 0 0000 0 0011122346788999999999999999998888777655 4688
Q ss_pred EEEcCCCCCcCCCCCcHHHHHHHHHHHHH
Q 008873 519 ILIFPDERHMPRRHRDRIYMEERIWEFIE 547 (550)
Q Consensus 519 ~~~~p~~~H~~~~~~~~~~~~~~~~~fl~ 547 (550)
++++|++||.+ ..+....+.+.+.+||.
T Consensus 254 ~~~i~~agH~~-~~e~p~~~~~~i~~fl~ 281 (282)
T TIGR03343 254 LHVFSRCGHWA-QWEHADAFNRLVIDFLR 281 (282)
T ss_pred EEEeCCCCcCC-cccCHHHHHHHHHHHhh
Confidence 99999999997 55777888899999985
No 51
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.76 E-value=1.7e-16 Score=159.94 Aligned_cols=205 Identities=12% Similarity=0.114 Sum_probs=142.2
Q ss_pred cceEEEcCCCCeEEEEEEeCCCCCeEEEeecCCCCCCCCCcccccCCCCCCCCCeEEEEEEECCCCceEEEEcccCCCCC
Q 008873 4 KTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQ 83 (550)
Q Consensus 4 ~~~~~wSPdg~~lay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~ 83 (550)
...+.|||||++|||++.++.. .+|+++|+++++.++++..
T Consensus 206 v~~p~wSPDG~~la~~s~~~~~---------------------------------~~i~i~dl~tg~~~~l~~~------ 246 (429)
T PRK01742 206 LMSPAWSPDGSKLAYVSFENKK---------------------------------SQLVVHDLRSGARKVVASF------ 246 (429)
T ss_pred cccceEcCCCCEEEEEEecCCC---------------------------------cEEEEEeCCCCceEEEecC------
Confidence 3567899999999998764321 3689999999987766421
Q ss_pred CCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCceeeccCccccCCCCCccCCCc--EEEEE
Q 008873 84 NYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYSGG--FIWAS 161 (550)
Q Consensus 84 ~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~s 161 (550)
......++|||||+.|++...+. +..+||.+++++++.++|+..... ... + .|++|+ ++|.+
T Consensus 247 ---~g~~~~~~wSPDG~~La~~~~~~-g~~~Iy~~d~~~~~~~~lt~~~~~---~~~----~-----~wSpDG~~i~f~s 310 (429)
T PRK01742 247 ---RGHNGAPAFSPDGSRLAFASSKD-GVLNIYVMGANGGTPSQLTSGAGN---NTE----P-----SWSPDGQSILFTS 310 (429)
T ss_pred ---CCccCceeECCCCCEEEEEEecC-CcEEEEEEECCCCCeEeeccCCCC---cCC----E-----EECCCCCEEEEEE
Confidence 22334689999999988876543 345799999999998888763221 111 1 355554 78888
Q ss_pred ccCCccEEEEEeCCCceeecccccCeEEEEEEeEeecCCEEEEEEcCCCCceeEEEEEEeCCCCCCCCCCCeeeCCCCce
Q 008873 162 EKTGFRHLYLHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTNGKGK 241 (550)
Q Consensus 162 ~~~g~~~l~~~~~~~~~~~~lT~~~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~~v~~~~~g~~~~~~~~~lt~~~~~ 241 (550)
++.|..+||.++..++..++++...+ . ..|+|||+.|++.+. ..++.+++. +| ..+.++.....
T Consensus 311 ~~~g~~~I~~~~~~~~~~~~l~~~~~---~-~~~SpDG~~ia~~~~------~~i~~~Dl~-~g-----~~~~lt~~~~~ 374 (429)
T PRK01742 311 DRSGSPQVYRMSASGGGASLVGGRGY---S-AQISADGKTLVMING------DNVVKQDLT-SG-----STEVLSSTFLD 374 (429)
T ss_pred CCCCCceEEEEECCCCCeEEecCCCC---C-ccCCCCCCEEEEEcC------CCEEEEECC-CC-----CeEEecCCCCC
Confidence 88899999999988877777754321 2 359999999999865 246777872 23 34555543223
Q ss_pred EEEEECCCCCEEEEeecCCCCCCEEEEEEcCCCceeEecc
Q 008873 242 HVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLY 281 (550)
Q Consensus 242 ~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~~~~~l~ 281 (550)
.+++|||||+.|++.... .....+++++. +|+..+.+.
T Consensus 375 ~~~~~sPdG~~i~~~s~~-g~~~~l~~~~~-~G~~~~~l~ 412 (429)
T PRK01742 375 ESPSISPNGIMIIYSSTQ-GLGKVLQLVSA-DGRFKARLP 412 (429)
T ss_pred CCceECCCCCEEEEEEcC-CCceEEEEEEC-CCCceEEcc
Confidence 556899999999888654 33345677665 566666664
No 52
>PLN02511 hydrolase
Probab=99.76 E-value=4.2e-17 Score=161.37 Aligned_cols=237 Identities=19% Similarity=0.146 Sum_probs=148.9
Q ss_pred CCeEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCC
Q 008873 297 PPDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARR 376 (550)
Q Consensus 297 ~~~~~~~~~~~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~ 376 (550)
..++..++..||..+...++.+... ..+...|+||++||..++.. ..| +......+.++||.|+++|+||+|++
T Consensus 70 ~~~re~l~~~DG~~~~ldw~~~~~~-~~~~~~p~vvllHG~~g~s~--~~y---~~~~~~~~~~~g~~vv~~d~rG~G~s 143 (388)
T PLN02511 70 RYRRECLRTPDGGAVALDWVSGDDR-ALPADAPVLILLPGLTGGSD--DSY---VRHMLLRARSKGWRVVVFNSRGCADS 143 (388)
T ss_pred ceeEEEEECCCCCEEEEEecCcccc-cCCCCCCEEEEECCCCCCCC--CHH---HHHHHHHHHHCCCEEEEEecCCCCCC
Confidence 4566678888998887665543221 11134589999999765432 111 12234556789999999999999987
Q ss_pred chhhHHHHhhccCCCchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhCCCe--eEEEEEcCCcCCcc----
Q 008873 377 GLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDV--FQCAVSGAPVTSWD---- 450 (550)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~--~~~~v~~~~~~~~~---- 450 (550)
...-. ..+.....+|+.++++++..+. ...++.++|+||||.+++.++.++++. +.+++++++..+..
T Consensus 144 ~~~~~----~~~~~~~~~Dl~~~i~~l~~~~--~~~~~~lvG~SlGg~i~~~yl~~~~~~~~v~~~v~is~p~~l~~~~~ 217 (388)
T PLN02511 144 PVTTP----QFYSASFTGDLRQVVDHVAGRY--PSANLYAAGWSLGANILVNYLGEEGENCPLSGAVSLCNPFDLVIADE 217 (388)
T ss_pred CCCCc----CEEcCCchHHHHHHHHHHHHHC--CCCCEEEEEechhHHHHHHHHHhcCCCCCceEEEEECCCcCHHHHHH
Confidence 53211 1111234789999999998763 245899999999999999999998876 67777666554421
Q ss_pred --------cccchhh----------hhcc-CCC---------------------------CCCc-cccccCChhhhhhcC
Q 008873 451 --------GYDTFYT----------EKYM-GLP---------------------------SEDP-VGYEYSSVMHHVHKM 483 (550)
Q Consensus 451 --------~~~~~~~----------~~~~-g~~---------------------------~~~~-~~~~~~~~~~~~~~i 483 (550)
.+...+. ...+ ..+ .... +.|...++...+.+|
T Consensus 218 ~~~~~~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd~~~t~~~~gf~~~~~yy~~~s~~~~L~~I 297 (388)
T PLN02511 218 DFHKGFNNVYDKALAKALRKIFAKHALLFEGLGGEYNIPLVANAKTVRDFDDGLTRVSFGFKSVDAYYSNSSSSDSIKHV 297 (388)
T ss_pred HHhccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCccCHHHHHhCCCHHHHHHhhhhhcCCCCCHHHHHHHcCchhhhccC
Confidence 0000000 0000 000 0000 112344556678889
Q ss_pred CCcEEEEecCCCCCCChHHHHHHHHHHHHcCCCeEEEEcCCCCCcCCC--CCc---HHHHHHHHHHHHHH
Q 008873 484 KGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRR--HRD---RIYMEERIWEFIER 548 (550)
Q Consensus 484 ~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p~~~H~~~~--~~~---~~~~~~~~~~fl~~ 548 (550)
++|+|+|+|++|+.+|...... .+.+...++++.+++++||.... +.. .....+.+.+||+.
T Consensus 298 ~vPtLiI~g~dDpi~p~~~~~~---~~~~~~p~~~l~~~~~gGH~~~~E~p~~~~~~~w~~~~i~~Fl~~ 364 (388)
T PLN02511 298 RVPLLCIQAANDPIAPARGIPR---EDIKANPNCLLIVTPSGGHLGWVAGPEAPFGAPWTDPVVMEFLEA 364 (388)
T ss_pred CCCeEEEEcCCCCcCCcccCcH---hHHhcCCCEEEEECCCcceeccccCCCCCCCCccHHHHHHHHHHH
Confidence 9999999999999998764321 12223467899999999997522 111 11246778888865
No 53
>PF12695 Abhydrolase_5: Alpha/beta hydrolase family; PDB: 3D0K_B 2I3D_B 3DOH_B 3DOI_B 3PFB_A 3S2Z_B 3PFC_A 3QM1_A 3PF8_B 3PF9_A ....
Probab=99.75 E-value=1.7e-17 Score=141.49 Aligned_cols=145 Identities=23% Similarity=0.210 Sum_probs=111.9
Q ss_pred EEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCchhhHHHHhhccCCCchHHHHHHHHHHHHcCCC
Q 008873 330 TLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLA 409 (550)
Q Consensus 330 ~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~ 409 (550)
+||++||...... .+..+++.|+++||.|+.+|+|+.+.+.. ..+...+++++.+...
T Consensus 1 ~vv~~HG~~~~~~-------~~~~~~~~l~~~G~~v~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~- 58 (145)
T PF12695_consen 1 VVVLLHGWGGSRR-------DYQPLAEALAEQGYAVVAFDYPGHGDSDG--------------ADAVERVLADIRAGYP- 58 (145)
T ss_dssp EEEEECTTTTTTH-------HHHHHHHHHHHTTEEEEEESCTTSTTSHH--------------SHHHHHHHHHHHHHHC-
T ss_pred CEEEECCCCCCHH-------HHHHHHHHHHHCCCEEEEEecCCCCccch--------------hHHHHHHHHHHHhhcC-
Confidence 5789999766532 24456889999999999999999886632 1244555555433222
Q ss_pred CCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCcccccchhhhhccCCCCCCccccccCChhhhhhcCCCcEEE
Q 008873 410 KVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTFYTEKYMGLPSEDPVGYEYSSVMHHVHKMKGKLLL 489 (550)
Q Consensus 410 d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~P~li 489 (550)
|.++|+++|||+||.+++.++.++ ..++++|+.+|.. ....+.+.+.|+|+
T Consensus 59 ~~~~i~l~G~S~Gg~~a~~~~~~~-~~v~~~v~~~~~~----------------------------~~~~~~~~~~pv~~ 109 (145)
T PF12695_consen 59 DPDRIILIGHSMGGAIAANLAARN-PRVKAVVLLSPYP----------------------------DSEDLAKIRIPVLF 109 (145)
T ss_dssp TCCEEEEEEETHHHHHHHHHHHHS-TTESEEEEESESS----------------------------GCHHHTTTTSEEEE
T ss_pred CCCcEEEEEEccCcHHHHHHhhhc-cceeEEEEecCcc----------------------------chhhhhccCCcEEE
Confidence 889999999999999999999987 7789999988720 02345566779999
Q ss_pred EecCCCCCCChHHHHHHHHHHHHcCCCeEEEEcCCCCCc
Q 008873 490 VHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHM 528 (550)
Q Consensus 490 i~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p~~~H~ 528 (550)
++|++|..+++++..++++++. .+.++.++++++|+
T Consensus 110 i~g~~D~~~~~~~~~~~~~~~~---~~~~~~~i~g~~H~ 145 (145)
T PF12695_consen 110 IHGENDPLVPPEQVRRLYEALP---GPKELYIIPGAGHF 145 (145)
T ss_dssp EEETT-SSSHHHHHHHHHHHHC---SSEEEEEETTS-TT
T ss_pred EEECCCCcCCHHHHHHHHHHcC---CCcEEEEeCCCcCc
Confidence 9999999999999999999884 67899999999995
No 54
>TIGR01607 PST-A Plasmodium subtelomeric family (PST-A). These genes are preferentially located in the subtelomeric regions of the chromosomes of both P. falciparum and P. yoelii.
Probab=99.75 E-value=7.9e-17 Score=156.23 Aligned_cols=236 Identities=14% Similarity=0.112 Sum_probs=146.1
Q ss_pred EEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeeccccc---------------ccc----hhHhHHHHhCCc
Q 008873 303 IQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWI---------------NTV----DMRAQYLRSKGI 363 (550)
Q Consensus 303 ~~~~~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~---------------~~~----~~~~~~l~~~G~ 363 (550)
|++.||..|....+.|.. +..+|+++||-.+.....-... .++ ..+++.|+++||
T Consensus 2 ~~~~~g~~l~~~~~~~~~------~kg~v~i~HG~~eh~~~~~~~~~~~~~~~~~~~~~~~~ry~~y~~~~~~~l~~~G~ 75 (332)
T TIGR01607 2 FRNKDGLLLKTYSWIVKN------AIGIIVLIHGLKSHLRLQFLKINAKIVNNDRAVLIDTDNYYIYKDSWIENFNKNGY 75 (332)
T ss_pred ccCCCCCeEEEeeeeccC------CeEEEEEECCCchhhhhhhhhcCcccCCCCeeEEEcCCcceEeeHHHHHHHHHCCC
Confidence 566789999999998853 3479999999544432000000 011 235789999999
Q ss_pred EEEEECCCCCCCCchhhHHHHh-hccCCCchHHHHHHHHHHHHc------------------CCCCCCceEEEEechhHH
Q 008873 364 LVWKLDNRGTARRGLKFEASIK-HNCGRIDAEDQLTGAEWLIKQ------------------GLAKVGHIGLYGWSYGGY 424 (550)
Q Consensus 364 ~vv~~d~rG~g~~~~~~~~~~~-~~~~~~~~~D~~~~~~~l~~~------------------~~~d~~~i~i~G~S~GG~ 424 (550)
.|+++|+||+|.+...-..... ..+ ..-++|+...++.+.+. .+-...+++|+||||||.
T Consensus 76 ~V~~~D~rGHG~S~~~~~~~g~~~~~-~~~v~Dl~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~GhSmGg~ 154 (332)
T TIGR01607 76 SVYGLDLQGHGESDGLQNLRGHINCF-DDLVYDVIQYMNRINDSIILENETKSDDESYDIVNTKENRLPMYIIGLSMGGN 154 (332)
T ss_pred cEEEecccccCCCccccccccchhhH-HHHHHHHHHHHHHhhhhhccccccccccccccccccccCCCceeEeeccCccH
Confidence 9999999999976532000000 000 01146677777766541 111135799999999999
Q ss_pred HHHHHHhhCCC--------eeEEEEEcCCcCCcccc--------cc----h------hhhhc-cCC-------CC-----
Q 008873 425 LSAITLARFPD--------VFQCAVSGAPVTSWDGY--------DT----F------YTEKY-MGL-------PS----- 465 (550)
Q Consensus 425 ~a~~~~~~~~~--------~~~~~v~~~~~~~~~~~--------~~----~------~~~~~-~g~-------~~----- 465 (550)
+++.++..+++ .++++|+.+|....... .. . +.... .+. +.
T Consensus 155 i~~~~~~~~~~~~~~~~~~~i~g~i~~s~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 234 (332)
T TIGR01607 155 IALRLLELLGKSNENNDKLNIKGCISLSGMISIKSVGSDDSFKFKYFYLPVMNFMSRVFPTFRISKKIRYEKSPYVNDII 234 (332)
T ss_pred HHHHHHHHhccccccccccccceEEEeccceEEecccCCCcchhhhhHHHHHHHHHHHCCcccccCccccccChhhhhHH
Confidence 99988765432 57888887776432110 00 0 00000 000 00
Q ss_pred -CCccccccC-C-------------hhhhhhcC--CCcEEEEecCCCCCCChHHHHHHHHHHHHcCCCeEEEEcCCCCCc
Q 008873 466 -EDPVGYEYS-S-------------VMHHVHKM--KGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHM 528 (550)
Q Consensus 466 -~~~~~~~~~-~-------------~~~~~~~i--~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p~~~H~ 528 (550)
.++..+... + ....+.++ ++|+|++||+.|..+++..+.++++++.. .+.++.+|++++|.
T Consensus 235 ~~Dp~~~~~~~s~~~~~~l~~~~~~~~~~~~~i~~~~P~Lii~G~~D~vv~~~~~~~~~~~~~~--~~~~l~~~~g~~H~ 312 (332)
T TIGR01607 235 KFDKFRYDGGITFNLASELIKATDTLDCDIDYIPKDIPILFIHSKGDCVCSYEGTVSFYNKLSI--SNKELHTLEDMDHV 312 (332)
T ss_pred hcCccccCCcccHHHHHHHHHHHHHHHhhHhhCCCCCCEEEEEeCCCCccCHHHHHHHHHhccC--CCcEEEEECCCCCC
Confidence 001001000 0 01123445 58999999999999999999888876532 35788999999999
Q ss_pred CCCCCcHHHHHHHHHHHHH
Q 008873 529 PRRHRDRIYMEERIWEFIE 547 (550)
Q Consensus 529 ~~~~~~~~~~~~~~~~fl~ 547 (550)
+.......++.+.+.+||+
T Consensus 313 i~~E~~~~~v~~~i~~wL~ 331 (332)
T TIGR01607 313 ITIEPGNEEVLKKIIEWIS 331 (332)
T ss_pred CccCCCHHHHHHHHHHHhh
Confidence 8766667889999999986
No 55
>TIGR03100 hydr1_PEP hydrolase, ortholog 1, exosortase system type 1 associated. This group of proteins are members of the alpha/beta hydrolase superfamily. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present in the vicinity of a second, relatively unrelated enzyme (ortholog 2, TIGR03101) of the same superfamily.
Probab=99.75 E-value=1.9e-16 Score=149.60 Aligned_cols=231 Identities=16% Similarity=0.135 Sum_probs=145.2
Q ss_pred eEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCch
Q 008873 299 DIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGL 378 (550)
Q Consensus 299 ~~~~~~~~~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~ 378 (550)
+.+.|.. +|..+.+.++.|.+. + .|.||++|||+.... ..+ ..+..+++.|+++||.|+++|+||+|.+..
T Consensus 3 ~~~~~~~-~~~~l~g~~~~p~~~----~-~~~vv~i~gg~~~~~--g~~-~~~~~la~~l~~~G~~v~~~Dl~G~G~S~~ 73 (274)
T TIGR03100 3 RALTFSC-EGETLVGVLHIPGAS----H-TTGVLIVVGGPQYRV--GSH-RQFVLLARRLAEAGFPVLRFDYRGMGDSEG 73 (274)
T ss_pred eeEEEEc-CCcEEEEEEEcCCCC----C-CCeEEEEeCCccccC--Cch-hHHHHHHHHHHHCCCEEEEeCCCCCCCCCC
Confidence 4567765 578899999999753 2 245666777654321 011 123345788999999999999999997753
Q ss_pred hhHHHHhhccCCCchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCcccc--c---
Q 008873 379 KFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGY--D--- 453 (550)
Q Consensus 379 ~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~~~--~--- 453 (550)
... ... ...+|+.++++++.++.. ..++|+++|||+||.+++.++.. +..++++|+.+|....... .
T Consensus 74 ~~~--~~~----~~~~d~~~~~~~l~~~~~-g~~~i~l~G~S~Gg~~a~~~a~~-~~~v~~lil~~p~~~~~~~~~~~~~ 145 (274)
T TIGR03100 74 ENL--GFE----GIDADIAAAIDAFREAAP-HLRRIVAWGLCDAASAALLYAPA-DLRVAGLVLLNPWVRTEAAQAASRI 145 (274)
T ss_pred CCC--CHH----HHHHHHHHHHHHHHhhCC-CCCcEEEEEECHHHHHHHHHhhh-CCCccEEEEECCccCCcccchHHHH
Confidence 211 111 125789999999976521 23679999999999999988764 5678999999887431110 0
Q ss_pred -chhh---------hhc-cCCCCCCc---cc-------c-----------ccCChhhhhhcCCCcEEEEecCCCCCCChH
Q 008873 454 -TFYT---------EKY-MGLPSEDP---VG-------Y-----------EYSSVMHHVHKMKGKLLLVHGMIDENVHFR 501 (550)
Q Consensus 454 -~~~~---------~~~-~g~~~~~~---~~-------~-----------~~~~~~~~~~~i~~P~lii~G~~D~~v~~~ 501 (550)
..+. .+. .|. +... .. + ........+.++++|+|+++|+.|...+..
T Consensus 146 ~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~P~ll~~g~~D~~~~~~ 224 (274)
T TIGR03100 146 RHYYLGQLLSADFWRKLLSGE-VNLGSSLRGLGDALLKARQKGDEVAHGGLAERMKAGLERFQGPVLFILSGNDLTAQEF 224 (274)
T ss_pred HHHHHHHHhChHHHHHhcCCC-ccHHHHHHHHHHHHHhhhhcCCCcccchHHHHHHHHHHhcCCcEEEEEcCcchhHHHH
Confidence 0000 001 010 0000 00 0 000112335567899999999999864311
Q ss_pred HHHHHH--HHHHH--cCCCeEEEEcCCCCCcCCCCCcHHHHHHHHHHHHHH
Q 008873 502 HTARLI--NALVA--ARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIER 548 (550)
Q Consensus 502 ~~~~~~--~~l~~--~~~~~~~~~~p~~~H~~~~~~~~~~~~~~~~~fl~~ 548 (550)
...+. ....+ ....+++..+|+++|.+.....+..+.+.+.+||++
T Consensus 225 -~~~~~~~~~~~~~l~~~~v~~~~~~~~~H~l~~e~~~~~v~~~i~~wL~~ 274 (274)
T TIGR03100 225 -ADSVLGEPAWRGALEDPGIERVEIDGADHTFSDRVWREWVAARTTEWLRR 274 (274)
T ss_pred -HHHhccChhhHHHhhcCCeEEEecCCCCcccccHHHHHHHHHHHHHHHhC
Confidence 10000 22222 125688999999999887778889999999999963
No 56
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.75 E-value=1e-15 Score=154.41 Aligned_cols=191 Identities=18% Similarity=0.143 Sum_probs=140.5
Q ss_pred EEEEEEECCCCceEEEEcccCCCCCCCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCceee
Q 008873 59 VRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVN 138 (550)
Q Consensus 59 ~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~ 138 (550)
.+|+++|.++...+.++. ....+..|+|||||+.|++...+. +..+||++++++|+.++|+......
T Consensus 198 ~~l~i~d~dG~~~~~l~~---------~~~~~~~p~wSPDG~~La~~s~~~-g~~~L~~~dl~tg~~~~lt~~~g~~--- 264 (448)
T PRK04792 198 YQLMIADYDGYNEQMLLR---------SPEPLMSPAWSPDGRKLAYVSFEN-RKAEIFVQDIYTQVREKVTSFPGIN--- 264 (448)
T ss_pred eEEEEEeCCCCCceEeec---------CCCcccCceECCCCCEEEEEEecC-CCcEEEEEECCCCCeEEecCCCCCc---
Confidence 578999999987777643 244667799999999999887654 3568999999999988887543210
Q ss_pred ccCccccCCCCCccCCCc--EEEEEccCCccEEEEEeCCCceeecccccCeEEEEEEeEeecCCEEEEEEcCCCCceeEE
Q 008873 139 LHDCFTPLDKGVTKYSGG--FIWASEKTGFRHLYLHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHL 216 (550)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~--~~~~s~~~g~~~l~~~~~~~~~~~~lT~~~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l 216 (550)
..+ .|++|+ +++.++++|..+||++++++++.++||.+......+ .|+|||++|+|+++..+. .+|
T Consensus 265 ----~~~-----~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~~lt~~~~~~~~p-~wSpDG~~I~f~s~~~g~--~~I 332 (448)
T PRK04792 265 ----GAP-----RFSPDGKKLALVLSKDGQPEIYVVDIATKALTRITRHRAIDTEP-SWHPDGKSLIFTSERGGK--PQI 332 (448)
T ss_pred ----CCe-----eECCCCCEEEEEEeCCCCeEEEEEECCCCCeEECccCCCCccce-EECCCCCEEEEEECCCCC--ceE
Confidence 111 345554 777777788899999999999999999865433444 599999999999876553 689
Q ss_pred EEEEeCCCCCCCCCCCeeeCCCCc-eEEEEECCCCCEEEEeecCCCCCCEEEEEEcCCCceeEeccC
Q 008873 217 YCAKLYPDWNHTLEAPVKLTNGKG-KHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLYE 282 (550)
Q Consensus 217 ~~v~~~~~g~~~~~~~~~lt~~~~-~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~~~~~l~~ 282 (550)
|.+++ .++ +.++++.... .....|||||++++++... ....+|+++++.+++ .+.++.
T Consensus 333 y~~dl--~~g----~~~~Lt~~g~~~~~~~~SpDG~~l~~~~~~-~g~~~I~~~dl~~g~-~~~lt~ 391 (448)
T PRK04792 333 YRVNL--ASG----KVSRLTFEGEQNLGGSITPDGRSMIMVNRT-NGKFNIARQDLETGA-MQVLTS 391 (448)
T ss_pred EEEEC--CCC----CEEEEecCCCCCcCeeECCCCCEEEEEEec-CCceEEEEEECCCCC-eEEccC
Confidence 99998 443 5667764322 3346899999999887654 334589999997776 456654
No 57
>TIGR03611 RutD pyrimidine utilization protein D. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the hydrolase, alpha/beta fold family defined by pfam00067.
Probab=99.74 E-value=5e-17 Score=153.03 Aligned_cols=199 Identities=15% Similarity=0.169 Sum_probs=129.5
Q ss_pred CceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCchhhHHHHhhccCCCchHHHHHHHHHHHHc
Q 008873 327 PYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQ 406 (550)
Q Consensus 327 ~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~ 406 (550)
+.|+||++||.+++.. . |......|. +||.|+++|+||+|.+..... .....+|..+.+..++++
T Consensus 12 ~~~~iv~lhG~~~~~~---~----~~~~~~~l~-~~~~vi~~D~~G~G~S~~~~~-------~~~~~~~~~~~~~~~i~~ 76 (257)
T TIGR03611 12 DAPVVVLSSGLGGSGS---Y----WAPQLDVLT-QRFHVVTYDHRGTGRSPGELP-------PGYSIAHMADDVLQLLDA 76 (257)
T ss_pred CCCEEEEEcCCCcchh---H----HHHHHHHHH-hccEEEEEcCCCCCCCCCCCc-------ccCCHHHHHHHHHHHHHH
Confidence 4588999999766532 2 232344454 579999999999998764321 112244444444443333
Q ss_pred CCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCccccc-chh------------------------hhhcc
Q 008873 407 GLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYD-TFY------------------------TEKYM 461 (550)
Q Consensus 407 ~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~------------------------~~~~~ 461 (550)
. +..++.++||||||++++.++.++|++++++|..++........ ..+ ...++
T Consensus 77 ~--~~~~~~l~G~S~Gg~~a~~~a~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (257)
T TIGR03611 77 L--NIERFHFVGHALGGLIGLQLALRYPERLLSLVLINAWSRPDPHTRRCFDVRIALLQHAGPEAYVHAQALFLYPADWI 154 (257)
T ss_pred h--CCCcEEEEEechhHHHHHHHHHHChHHhHHheeecCCCCCChhHHHHHHHHHHHHhccCcchhhhhhhhhhccccHh
Confidence 2 45689999999999999999999999999999887754321000 000 00000
Q ss_pred CC--C------------CCCc-------cccccCChhhhhhcCCCcEEEEecCCCCCCChHHHHHHHHHHHHcCCCeEEE
Q 008873 462 GL--P------------SEDP-------VGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEIL 520 (550)
Q Consensus 462 g~--~------------~~~~-------~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~ 520 (550)
.. + .... ..+...+....++++++|+|+++|++|..+|++.+.++++.+ ...++.
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~l~i~g~~D~~~~~~~~~~~~~~~----~~~~~~ 230 (257)
T TIGR03611 155 SENAARLAADEAHALAHFPGKANVLRRINALEAFDVSARLDRIQHPVLLIANRDDMLVPYTQSLRLAAAL----PNAQLK 230 (257)
T ss_pred hccchhhhhhhhhcccccCccHHHHHHHHHHHcCCcHHHhcccCccEEEEecCcCcccCHHHHHHHHHhc----CCceEE
Confidence 00 0 0000 000112223456778899999999999999999888887754 346788
Q ss_pred EcCCCCCcCCCCCcHHHHHHHHHHHHH
Q 008873 521 IFPDERHMPRRHRDRIYMEERIWEFIE 547 (550)
Q Consensus 521 ~~p~~~H~~~~~~~~~~~~~~~~~fl~ 547 (550)
.++++||.+. .++...+.+.+.+||+
T Consensus 231 ~~~~~gH~~~-~~~~~~~~~~i~~fl~ 256 (257)
T TIGR03611 231 LLPYGGHASN-VTDPETFNRALLDFLK 256 (257)
T ss_pred EECCCCCCcc-ccCHHHHHHHHHHHhc
Confidence 8999999974 4677888899999986
No 58
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.74 E-value=8.6e-16 Score=154.57 Aligned_cols=191 Identities=18% Similarity=0.199 Sum_probs=139.2
Q ss_pred EEEEEEECCCCceEEEEcccCCCCCCCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCceee
Q 008873 59 VRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVN 138 (550)
Q Consensus 59 ~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~ 138 (550)
.+|+++|.++...++++. ....+.+++|||||+.|++.+.+. ...+||+.++.+|+.++|+......
T Consensus 176 ~~L~~~D~dG~~~~~l~~---------~~~~v~~p~wSPDG~~la~~s~~~-~~~~I~~~dl~~g~~~~l~~~~g~~--- 242 (427)
T PRK02889 176 YQLQISDADGQNAQSALS---------SPEPIISPAWSPDGTKLAYVSFES-KKPVVYVHDLATGRRRVVANFKGSN--- 242 (427)
T ss_pred cEEEEECCCCCCceEecc---------CCCCcccceEcCCCCEEEEEEccC-CCcEEEEEECCCCCEEEeecCCCCc---
Confidence 578999998877777643 234567899999999999887653 3467999999999988887533211
Q ss_pred ccCccccCCCCCccCCCc--EEEEEccCCccEEEEEeCCCceeecccccCeEEEEEEeEeecCCEEEEEEcCCCCceeEE
Q 008873 139 LHDCFTPLDKGVTKYSGG--FIWASEKTGFRHLYLHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHL 216 (550)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~--~~~~s~~~g~~~l~~~~~~~~~~~~lT~~~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l 216 (550)
..+ .|++|+ +++.+.++|..+||.++.++++.++||.+......+ .|+|||++|+|.+++.+. .+|
T Consensus 243 ----~~~-----~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~-~wSpDG~~l~f~s~~~g~--~~I 310 (427)
T PRK02889 243 ----SAP-----AWSPDGRTLAVALSRDGNSQIYTVNADGSGLRRLTQSSGIDTEP-FFSPDGRSIYFTSDRGGA--PQI 310 (427)
T ss_pred ----cce-----EECCCCCEEEEEEccCCCceEEEEECCCCCcEECCCCCCCCcCe-EEcCCCCEEEEEecCCCC--cEE
Confidence 011 355555 777777888899999999988889999865333344 499999999999876543 689
Q ss_pred EEEEeCCCCCCCCCCCeeeCCCCc-eEEEEECCCCCEEEEeecCCCCCCEEEEEEcCCCceeEeccC
Q 008873 217 YCAKLYPDWNHTLEAPVKLTNGKG-KHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLYE 282 (550)
Q Consensus 217 ~~v~~~~~g~~~~~~~~~lt~~~~-~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~~~~~l~~ 282 (550)
|.+++ +++ ..++++...+ ...+.|||||++|+++.... ...+|+++++.+++ .+.++.
T Consensus 311 y~~~~--~~g----~~~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~-g~~~I~v~d~~~g~-~~~lt~ 369 (427)
T PRK02889 311 YRMPA--SGG----AAQRVTFTGSYNTSPRISPDGKLLAYISRVG-GAFKLYVQDLATGQ-VTALTD 369 (427)
T ss_pred EEEEC--CCC----ceEEEecCCCCcCceEECCCCCEEEEEEccC-CcEEEEEEECCCCC-eEEccC
Confidence 99987 443 4566664432 34568999999999876543 33589999997776 456654
No 59
>COG0657 Aes Esterase/lipase [Lipid metabolism]
Probab=99.74 E-value=1.6e-16 Score=153.70 Aligned_cols=223 Identities=18% Similarity=0.199 Sum_probs=153.6
Q ss_pred cCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCchhhHHHH
Q 008873 305 ANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASI 384 (550)
Q Consensus 305 ~~~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~~~~~~~ 384 (550)
...+..+.+.+|.|.. ....+.|+||++|||.......+. ........++..|+.|+.+|||-..... |
T Consensus 58 ~~~~~~~~~~~y~p~~--~~~~~~p~vly~HGGg~~~g~~~~---~~~~~~~~~~~~g~~vv~vdYrlaPe~~--~---- 126 (312)
T COG0657 58 GPSGDGVPVRVYRPDR--KAAATAPVVLYLHGGGWVLGSLRT---HDALVARLAAAAGAVVVSVDYRLAPEHP--F---- 126 (312)
T ss_pred CCCCCceeEEEECCCC--CCCCCCcEEEEEeCCeeeecChhh---hHHHHHHHHHHcCCEEEecCCCCCCCCC--C----
Confidence 3345557899999922 122568999999998765432221 1233456677899999999999776431 1
Q ss_pred hhccCCCchHHHHHHHHHHHHc---CCCCCCceEEEEechhHHHHHHHHhhCCC----eeEEEEEcCCcCCccc-ccc--
Q 008873 385 KHNCGRIDAEDQLTGAEWLIKQ---GLAKVGHIGLYGWSYGGYLSAITLARFPD----VFQCAVSGAPVTSWDG-YDT-- 454 (550)
Q Consensus 385 ~~~~~~~~~~D~~~~~~~l~~~---~~~d~~~i~i~G~S~GG~~a~~~~~~~~~----~~~~~v~~~~~~~~~~-~~~-- 454 (550)
...++|+.++++|+.++ ..+|+++|+|+|+|.||++++.++....+ ..++.+.++|..|... ...
T Consensus 127 -----p~~~~d~~~a~~~l~~~~~~~g~dp~~i~v~GdSAGG~La~~~a~~~~~~~~~~p~~~~li~P~~d~~~~~~~~~ 201 (312)
T COG0657 127 -----PAALEDAYAAYRWLRANAAELGIDPSRIAVAGDSAGGHLALALALAARDRGLPLPAAQVLISPLLDLTSSAASLP 201 (312)
T ss_pred -----CchHHHHHHHHHHHHhhhHhhCCCccceEEEecCcccHHHHHHHHHHHhcCCCCceEEEEEecccCCcccccchh
Confidence 22378999999999976 35899999999999999999998875332 4688888899887664 110
Q ss_pred ---------------hhhhhccCCCCCCccccccCChhhh--hhcCCCcEEEEecCCCCCCChHHHHHHHHHHHHcCCCe
Q 008873 455 ---------------FYTEKYMGLPSEDPVGYEYSSVMHH--VHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPY 517 (550)
Q Consensus 455 ---------------~~~~~~~g~~~~~~~~~~~~~~~~~--~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~ 517 (550)
++...+.+....... ...+|+.. +.. -.|++|++|+.|...+ ++..+.++|++.|+++
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--p~~spl~~~~~~~-lPP~~i~~a~~D~l~~--~~~~~a~~L~~agv~~ 276 (312)
T COG0657 202 GYGEADLLDAAAILAWFADLYLGAAPDRED--PEASPLASDDLSG-LPPTLIQTAEFDPLRD--EGEAYAERLRAAGVPV 276 (312)
T ss_pred hcCCccccCHHHHHHHHHHHhCcCccccCC--CccCccccccccC-CCCEEEEecCCCcchh--HHHHHHHHHHHcCCeE
Confidence 111122221111110 12333322 233 4689999999999987 8999999999999999
Q ss_pred EEEEcCCCCCcCC--CCCcHHHHHHHHHHHHHH
Q 008873 518 EILIFPDERHMPR--RHRDRIYMEERIWEFIER 548 (550)
Q Consensus 518 ~~~~~p~~~H~~~--~~~~~~~~~~~~~~fl~~ 548 (550)
++..+|+..|.|. ........+..+.+|+..
T Consensus 277 ~~~~~~g~~H~f~~~~~~~a~~~~~~~~~~l~~ 309 (312)
T COG0657 277 ELRVYPGMIHGFDLLTGPEARSALRQIAAFLRA 309 (312)
T ss_pred EEEEeCCcceeccccCcHHHHHHHHHHHHHHHH
Confidence 9999999999883 322344446677777764
No 60
>PF06500 DUF1100: Alpha/beta hydrolase of unknown function (DUF1100); InterPro: IPR010520 Proteins in this entry display esterase activity toward pNP-butyrate []. This entry also includes 2,6-dihydropseudooxynicotine hydrolase which has a role in nicotine catabolism by cleaving a C-C bond in 2,6-dihydroxypseudooxyicotine [, ].; PDB: 3OUR_A 3MVE_B 2JBW_C.
Probab=99.74 E-value=3e-17 Score=156.36 Aligned_cols=230 Identities=18% Similarity=0.240 Sum_probs=140.5
Q ss_pred CCCCCeEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCC
Q 008873 294 QLEPPDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGT 373 (550)
Q Consensus 294 ~~~~~~~~~~~~~~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~ 373 (550)
.-...+++.|+..+ .+|++++..|... ++.|+||++-|....+. +. +..+..+++.+|++++++|.+|.
T Consensus 161 ~~~~i~~v~iP~eg-~~I~g~LhlP~~~----~p~P~VIv~gGlDs~qe--D~----~~l~~~~l~~rGiA~LtvDmPG~ 229 (411)
T PF06500_consen 161 SDYPIEEVEIPFEG-KTIPGYLHLPSGE----KPYPTVIVCGGLDSLQE--DL----YRLFRDYLAPRGIAMLTVDMPGQ 229 (411)
T ss_dssp SSSEEEEEEEEETT-CEEEEEEEESSSS----S-EEEEEEE--TTS-GG--GG----HHHHHCCCHHCT-EEEEE--TTS
T ss_pred CCCCcEEEEEeeCC-cEEEEEEEcCCCC----CCCCEEEEeCCcchhHH--HH----HHHHHHHHHhCCCEEEEEccCCC
Confidence 34557889999854 8899999999843 78899998755433221 11 12234568899999999999999
Q ss_pred CCCchhhHHHHhhccCCCchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCcccc-
Q 008873 374 ARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGY- 452 (550)
Q Consensus 374 g~~~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~~~- 452 (550)
|.+.... ...+. -.=..++++||...++||.+||+++|.|+||+.+.++|..++++++|+|+..|+++-...
T Consensus 230 G~s~~~~---l~~D~----~~l~~aVLd~L~~~p~VD~~RV~~~G~SfGGy~AvRlA~le~~RlkavV~~Ga~vh~~ft~ 302 (411)
T PF06500_consen 230 GESPKWP---LTQDS----SRLHQAVLDYLASRPWVDHTRVGAWGFSFGGYYAVRLAALEDPRLKAVVALGAPVHHFFTD 302 (411)
T ss_dssp GGGTTT----S-S-C----CHHHHHHHHHHHHSTTEEEEEEEEEEETHHHHHHHHHHHHTTTT-SEEEEES---SCGGH-
T ss_pred cccccCC---CCcCH----HHHHHHHHHHHhcCCccChhheEEEEeccchHHHHHHHHhcccceeeEeeeCchHhhhhcc
Confidence 8653211 11111 123468899999999999999999999999999999998778889998888775432111
Q ss_pred -------cchhh---hhccCCCCCCcc----ccccCChhh--hh--hcCCCcEEEEecCCCCCCChHHHHHHHHHHHHcC
Q 008873 453 -------DTFYT---EKYMGLPSEDPV----GYEYSSVMH--HV--HKMKGKLLLVHGMIDENVHFRHTARLINALVAAR 514 (550)
Q Consensus 453 -------~~~~~---~~~~g~~~~~~~----~~~~~~~~~--~~--~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~ 514 (550)
...+. ...+|....+.+ .....|... .+ .+.++|+|.+.|++|.++|.+.+..+.. .+
T Consensus 303 ~~~~~~~P~my~d~LA~rlG~~~~~~~~l~~el~~~SLk~qGlL~~rr~~~plL~i~~~~D~v~P~eD~~lia~----~s 378 (411)
T PF06500_consen 303 PEWQQRVPDMYLDVLASRLGMAAVSDESLRGELNKFSLKTQGLLSGRRCPTPLLAINGEDDPVSPIEDSRLIAE----SS 378 (411)
T ss_dssp HHHHTTS-HHHHHHHHHHCT-SCE-HHHHHHHGGGGSTTTTTTTTSS-BSS-EEEEEETT-SSS-HHHHHHHHH----TB
T ss_pred HHHHhcCCHHHHHHHHHHhCCccCCHHHHHHHHHhcCcchhccccCCCCCcceEEeecCCCCCCCHHHHHHHHh----cC
Confidence 11111 112233222221 123344433 12 5567899999999999999887765543 35
Q ss_pred CCeEEEEcCCCC-CcCCCCCcHHHHHHHHHHHHHHhC
Q 008873 515 KPYEILIFPDER-HMPRRHRDRIYMEERIWEFIERTL 550 (550)
Q Consensus 515 ~~~~~~~~p~~~-H~~~~~~~~~~~~~~~~~fl~~~l 550 (550)
.+-+...+|... |. ........+.+||++.|
T Consensus 379 ~~gk~~~~~~~~~~~-----gy~~al~~~~~Wl~~~l 410 (411)
T PF06500_consen 379 TDGKALRIPSKPLHM-----GYPQALDEIYKWLEDKL 410 (411)
T ss_dssp TT-EEEEE-SSSHHH-----HHHHHHHHHHHHHHHHH
T ss_pred CCCceeecCCCcccc-----chHHHHHHHHHHHHHhc
Confidence 555666676544 43 34566788999998764
No 61
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.74 E-value=3.5e-16 Score=158.38 Aligned_cols=211 Identities=15% Similarity=0.090 Sum_probs=147.2
Q ss_pred ceEEEcCCCCeEEEEEEeCCCCCeEEEeecCCCCCCCCCcccccCCCCCCCCCeEEEEEEECCCCceEEEEcccCCCCCC
Q 008873 5 TGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQN 84 (550)
Q Consensus 5 ~~~~wSPdg~~lay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~ 84 (550)
....|||||++|||+...... ..|+++|+++++...+...
T Consensus 193 ~~p~~Spdg~~la~~~~~~~~---------------------------------~~i~v~d~~~g~~~~~~~~------- 232 (417)
T TIGR02800 193 LSPAWSPDGQKLAYVSFESGK---------------------------------PEIYVQDLATGQREKVASF------- 232 (417)
T ss_pred ecccCCCCCCEEEEEEcCCCC---------------------------------cEEEEEECCCCCEEEeecC-------
Confidence 345699999999998654211 3689999999987766421
Q ss_pred CCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCceeeccCccccCCCCCccCCC--cEEEEEc
Q 008873 85 YDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYSG--GFIWASE 162 (550)
Q Consensus 85 ~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~s~ 162 (550)
......++|||||+.+++..... +..+||.+++.+++.++|+..... ...+ .|++| .++|.++
T Consensus 233 --~~~~~~~~~spDg~~l~~~~~~~-~~~~i~~~d~~~~~~~~l~~~~~~---~~~~---------~~s~dg~~l~~~s~ 297 (417)
T TIGR02800 233 --PGMNGAPAFSPDGSKLAVSLSKD-GNPDIYVMDLDGKQLTRLTNGPGI---DTEP---------SWSPDGKSIAFTSD 297 (417)
T ss_pred --CCCccceEECCCCCEEEEEECCC-CCccEEEEECCCCCEEECCCCCCC---CCCE---------EECCCCCEEEEEEC
Confidence 23344589999999888775543 345799999999988887653211 1111 23444 3778888
Q ss_pred cCCccEEEEEeCCCceeecccccCeEEEEEEeEeecCCEEEEEEcCCCCceeEEEEEEeCCCCCCCCCCCeeeCCCCceE
Q 008873 163 KTGFRHLYLHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTNGKGKH 242 (550)
Q Consensus 163 ~~g~~~l~~~~~~~~~~~~lT~~~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~~v~~~~~g~~~~~~~~~lt~~~~~~ 242 (550)
+.|..+||++++++++.++|+.+......+ .|+|||+.|+|+....+ ..+|+.+++ .+. ..+.++......
T Consensus 298 ~~g~~~iy~~d~~~~~~~~l~~~~~~~~~~-~~spdg~~i~~~~~~~~--~~~i~~~d~--~~~----~~~~l~~~~~~~ 368 (417)
T TIGR02800 298 RGGSPQIYMMDADGGEVRRLTFRGGYNASP-SWSPDGDLIAFVHREGG--GFNIAVMDL--DGG----GERVLTDTGLDE 368 (417)
T ss_pred CCCCceEEEEECCCCCEEEeecCCCCccCe-EECCCCCEEEEEEccCC--ceEEEEEeC--CCC----CeEEccCCCCCC
Confidence 888889999999988888888543333334 49999999999987653 378999998 332 455666543345
Q ss_pred EEEECCCCCEEEEeecCCCCCCEEEEEEcCCCceeEecc
Q 008873 243 VAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLY 281 (550)
Q Consensus 243 ~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~~~~~l~ 281 (550)
.+.|+|||+.|++....... ..+++.+. +|+..+.++
T Consensus 369 ~p~~spdg~~l~~~~~~~~~-~~l~~~~~-~g~~~~~~~ 405 (417)
T TIGR02800 369 SPSFAPNGRMILYATTRGGR-GVLGLVST-DGRFRARLP 405 (417)
T ss_pred CceECCCCCEEEEEEeCCCc-EEEEEEEC-CCceeeECC
Confidence 56899999999988776444 57888775 565555554
No 62
>PRK03592 haloalkane dehalogenase; Provisional
Probab=99.73 E-value=2.1e-16 Score=152.05 Aligned_cols=212 Identities=13% Similarity=0.087 Sum_probs=135.0
Q ss_pred CCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCchhhHHHHhh
Q 008873 307 DGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKH 386 (550)
Q Consensus 307 ~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~~~~~~~~~ 386 (550)
+|.++.+..+. ..|.||++||.+.+.. .|....+.|++++ .|+++|.||+|.+.....
T Consensus 15 ~g~~i~y~~~G---------~g~~vvllHG~~~~~~-------~w~~~~~~L~~~~-~via~D~~G~G~S~~~~~----- 72 (295)
T PRK03592 15 LGSRMAYIETG---------EGDPIVFLHGNPTSSY-------LWRNIIPHLAGLG-RCLAPDLIGMGASDKPDI----- 72 (295)
T ss_pred CCEEEEEEEeC---------CCCEEEEECCCCCCHH-------HHHHHHHHHhhCC-EEEEEcCCCCCCCCCCCC-----
Confidence 67777666442 1267888999876643 3444577787776 999999999998764311
Q ss_pred ccCCCchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCC---cccccc----hh---
Q 008873 387 NCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTS---WDGYDT----FY--- 456 (550)
Q Consensus 387 ~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~---~~~~~~----~~--- 456 (550)
....++..+.+..+.+.- +.+++.++|||+||.+++.++.++|++++++|+.++... +..+.. .+
T Consensus 73 ---~~~~~~~a~dl~~ll~~l--~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lil~~~~~~~~~~~~~~~~~~~~~~~~ 147 (295)
T PRK03592 73 ---DYTFADHARYLDAWFDAL--GLDDVVLVGHDWGSALGFDWAARHPDRVRGIAFMEAIVRPMTWDDFPPAVRELFQAL 147 (295)
T ss_pred ---CCCHHHHHHHHHHHHHHh--CCCCeEEEEECHHHHHHHHHHHhChhheeEEEEECCCCCCcchhhcchhHHHHHHHH
Confidence 122444444444444332 346899999999999999999999999999999886321 111100 00
Q ss_pred h----------------hhccCC---CCCCcc---cc-----------------ccCC--------------hhhhhhcC
Q 008873 457 T----------------EKYMGL---PSEDPV---GY-----------------EYSS--------------VMHHVHKM 483 (550)
Q Consensus 457 ~----------------~~~~g~---~~~~~~---~~-----------------~~~~--------------~~~~~~~i 483 (550)
. ...+.. .....+ .+ .... ....+.++
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i 227 (295)
T PRK03592 148 RSPGEGEEMVLEENVFIERVLPGSILRPLSDEEMAVYRRPFPTPESRRPTLSWPRELPIDGEPADVVALVEEYAQWLATS 227 (295)
T ss_pred hCcccccccccchhhHHhhcccCcccccCCHHHHHHHHhhcCCchhhhhhhhhhhhcCCCCcchhhHhhhhHhHHHhccC
Confidence 0 000000 000000 00 0000 01224567
Q ss_pred CCcEEEEecCCCCCCChHHHHHHHHHHHHcCCCeEEEEcCCCCCcCCCCCcHHHHHHHHHHHHHHh
Q 008873 484 KGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIERT 549 (550)
Q Consensus 484 ~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p~~~H~~~~~~~~~~~~~~~~~fl~~~ 549 (550)
++|+|+|+|++|..+++....++...+. .+.++.+++++||.+. .++.+.+.+.+.+||++.
T Consensus 228 ~~P~lii~G~~D~~~~~~~~~~~~~~~~---~~~~~~~i~~~gH~~~-~e~p~~v~~~i~~fl~~~ 289 (295)
T PRK03592 228 DVPKLLINAEPGAILTTGAIRDWCRSWP---NQLEITVFGAGLHFAQ-EDSPEEIGAAIAAWLRRL 289 (295)
T ss_pred CCCeEEEeccCCcccCcHHHHHHHHHhh---hhcceeeccCcchhhh-hcCHHHHHHHHHHHHHHh
Confidence 8999999999999996655555554432 2468889999999984 467889999999999864
No 63
>PLN02824 hydrolase, alpha/beta fold family protein
Probab=99.73 E-value=2.1e-16 Score=151.93 Aligned_cols=205 Identities=12% Similarity=-0.003 Sum_probs=131.9
Q ss_pred eEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCchhhHHHHhhccCCCchHHHHHHHHHHHHcCC
Q 008873 329 KTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGL 408 (550)
Q Consensus 329 P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~ 408 (550)
|.||++||.+.+.. .|......|++. |.|+++|.||+|.+...-.... .......++|+.+.+..++++-
T Consensus 30 ~~vlllHG~~~~~~-------~w~~~~~~L~~~-~~vi~~DlpG~G~S~~~~~~~~-~~~~~~~~~~~a~~l~~~l~~l- 99 (294)
T PLN02824 30 PALVLVHGFGGNAD-------HWRKNTPVLAKS-HRVYAIDLLGYGYSDKPNPRSA-PPNSFYTFETWGEQLNDFCSDV- 99 (294)
T ss_pred CeEEEECCCCCChh-------HHHHHHHHHHhC-CeEEEEcCCCCCCCCCCccccc-cccccCCHHHHHHHHHHHHHHh-
Confidence 67899999876643 344456777766 6999999999998764211000 0001233555555555554432
Q ss_pred CCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCc---ccc-----------cch----------hh-------
Q 008873 409 AKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSW---DGY-----------DTF----------YT------- 457 (550)
Q Consensus 409 ~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~---~~~-----------~~~----------~~------- 457 (550)
..+++.|+||||||++++.++.++|++++++|+.++.... ... ... +.
T Consensus 100 -~~~~~~lvGhS~Gg~va~~~a~~~p~~v~~lili~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (294)
T PLN02824 100 -VGDPAFVICNSVGGVVGLQAAVDAPELVRGVMLINISLRGLHIKKQPWLGRPFIKAFQNLLRETAVGKAFFKSVATPET 178 (294)
T ss_pred -cCCCeEEEEeCHHHHHHHHHHHhChhheeEEEEECCCcccccccccchhhhHHHHHHHHHHhchhHHHHHHHhhcCHHH
Confidence 2368999999999999999999999999999998864311 000 000 00
Q ss_pred -hhc----cCCC-CCCcc----------------cccc---C----ChhhhhhcCCCcEEEEecCCCCCCChHHHHHHHH
Q 008873 458 -EKY----MGLP-SEDPV----------------GYEY---S----SVMHHVHKMKGKLLLVHGMIDENVHFRHTARLIN 508 (550)
Q Consensus 458 -~~~----~g~~-~~~~~----------------~~~~---~----~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~ 508 (550)
... .+.. ..+.+ .+.. . .....+.++++|+|+++|++|..+|...+..+.+
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lvi~G~~D~~~~~~~~~~~~~ 258 (294)
T PLN02824 179 VKNILCQCYHDDSAVTDELVEAILRPGLEPGAVDVFLDFISYSGGPLPEELLPAVKCPVLIAWGEKDPWEPVELGRAYAN 258 (294)
T ss_pred HHHHHHHhccChhhccHHHHHHHHhccCCchHHHHHHHHhccccccchHHHHhhcCCCeEEEEecCCCCCChHHHHHHHh
Confidence 000 0000 00000 0000 0 1123467789999999999999999887766433
Q ss_pred HHHHcCCCeEEEEcCCCCCcCCCCCcHHHHHHHHHHHHHHh
Q 008873 509 ALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIERT 549 (550)
Q Consensus 509 ~l~~~~~~~~~~~~p~~~H~~~~~~~~~~~~~~~~~fl~~~ 549 (550)
.....++.+++++||.+ ..++...+.+.+.+||+++
T Consensus 259 ----~~~~~~~~~i~~~gH~~-~~e~p~~~~~~i~~fl~~~ 294 (294)
T PLN02824 259 ----FDAVEDFIVLPGVGHCP-QDEAPELVNPLIESFVARH 294 (294)
T ss_pred ----cCCccceEEeCCCCCCh-hhhCHHHHHHHHHHHHhcC
Confidence 23446889999999987 5578889999999999864
No 64
>TIGR03056 bchO_mg_che_rel putative magnesium chelatase accessory protein. Members of this family belong to the alpha/beta fold family hydrolases (PFAM model pfam00561). Members are found in bacterial genomes if and only if they encoded for anoxygenic photosynthetic systems similar to that of Rhodobacter capsulatus and other alpha-Proteobacteria. Members often are encoded in the same operon as subunits of the protoporphyrin IX magnesium chelatase, and were once designated BchO. No literature supports a role as an actual subunit of magnesium chelatase, but an accessory role is possible, as suggested by placement by its probable hydrolase activity.
Probab=99.73 E-value=3e-16 Score=149.70 Aligned_cols=217 Identities=13% Similarity=0.027 Sum_probs=136.0
Q ss_pred EEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCchhhH
Q 008873 302 QIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFE 381 (550)
Q Consensus 302 ~~~~~~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~~~~ 381 (550)
.+...++..+.+....+ .+.|+||++||.+++.. .|....+.|++ +|.|+++|+||+|.+.....
T Consensus 9 ~~~~~~~~~~~~~~~g~-------~~~~~vv~~hG~~~~~~-------~~~~~~~~l~~-~~~vi~~D~~G~G~S~~~~~ 73 (278)
T TIGR03056 9 RRVTVGPFHWHVQDMGP-------TAGPLLLLLHGTGASTH-------SWRDLMPPLAR-SFRVVAPDLPGHGFTRAPFR 73 (278)
T ss_pred ceeeECCEEEEEEecCC-------CCCCeEEEEcCCCCCHH-------HHHHHHHHHhh-CcEEEeecCCCCCCCCCccc
Confidence 33344666666544322 12378999999766532 23334556654 69999999999997653221
Q ss_pred HHHhhccCCCchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCccc---------c
Q 008873 382 ASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDG---------Y 452 (550)
Q Consensus 382 ~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~~---------~ 452 (550)
....++++.+.+..+.++. +.+++.|+||||||.+++.++.++|++++++++.++...... .
T Consensus 74 -------~~~~~~~~~~~l~~~i~~~--~~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~~v~~~~~~~~~~~~~~~~~~~~ 144 (278)
T TIGR03056 74 -------FRFTLPSMAEDLSALCAAE--GLSPDGVIGHSAGAAIALRLALDGPVTPRMVVGINAALMPFEGMAGTLFPYM 144 (278)
T ss_pred -------cCCCHHHHHHHHHHHHHHc--CCCCceEEEECccHHHHHHHHHhCCcccceEEEEcCcccccccccccccchh
Confidence 1123555555555555442 335789999999999999999999998888888776432100 0
Q ss_pred cch-----hh--------------hhccCC---CCC--Cccccc--------------------cCChhhhhhcCCCcEE
Q 008873 453 DTF-----YT--------------EKYMGL---PSE--DPVGYE--------------------YSSVMHHVHKMKGKLL 488 (550)
Q Consensus 453 ~~~-----~~--------------~~~~g~---~~~--~~~~~~--------------------~~~~~~~~~~i~~P~l 488 (550)
... .. ...+.. ... ....+. .......+.++++|+|
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~l 224 (278)
T TIGR03056 145 ARVLACNPFTPPMMSRGAADQQRVERLIRDTGSLLDKAGMTYYGRLIRSPAHVDGALSMMAQWDLAPLNRDLPRITIPLH 224 (278)
T ss_pred hHhhhhcccchHHHHhhcccCcchhHHhhccccccccchhhHHHHhhcCchhhhHHHHHhhcccccchhhhcccCCCCEE
Confidence 000 00 000000 000 000000 0001223566789999
Q ss_pred EEecCCCCCCChHHHHHHHHHHHHcCCCeEEEEcCCCCCcCCCCCcHHHHHHHHHHHHH
Q 008873 489 LVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIE 547 (550)
Q Consensus 489 ii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p~~~H~~~~~~~~~~~~~~~~~fl~ 547 (550)
+++|++|..+|+.....+.+.+ ...++..+|+++|.+. .+....+.+.+.+||+
T Consensus 225 ii~g~~D~~vp~~~~~~~~~~~----~~~~~~~~~~~gH~~~-~e~p~~~~~~i~~f~~ 278 (278)
T TIGR03056 225 LIAGEEDKAVPPDESKRAATRV----PTATLHVVPGGGHLVH-EEQADGVVGLILQAAE 278 (278)
T ss_pred EEEeCCCcccCHHHHHHHHHhc----cCCeEEEECCCCCccc-ccCHHHHHHHHHHHhC
Confidence 9999999999998877776554 3568899999999874 4667888899999874
No 65
>TIGR02427 protocat_pcaD 3-oxoadipate enol-lactonase. Members of this family are 3-oxoadipate enol-lactonase. Note that the substrate is known as 3-oxoadipate enol-lactone, 2-oxo-2,3-dihydrofuran-5-acetate, 4,5-Dihydro-5-oxofuran-2-acetate, and 5-oxo-4,5-dihydrofuran-2-acetate. The enzyme the catalyzes the fourth step in the protocatechuate degradation to beta-ketoadipate and then to succinyl-CoA and acetyl-CoA. 4-hydroxybenzoate, 3-hydroxybenzoate, and vanillate all can be converted in one step to protocatechuate. This enzyme also acts in catechol degradation. In genomes that catabolize both catechol and protocatechuate, two forms of this enzyme may be found. All members of the seed alignment for this model were chosen from within protocatechuate degradation operons of at least three genes of the pathway, from genomes with the complete pathway through beta-ketoadipate.
Probab=99.73 E-value=2.9e-17 Score=153.86 Aligned_cols=197 Identities=14% Similarity=0.136 Sum_probs=127.5
Q ss_pred CceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCchhhHHHHhhccCCCchHHHHHHHHHHHHc
Q 008873 327 PYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQ 406 (550)
Q Consensus 327 ~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~ 406 (550)
+.|+||++||.+.+.. .|....+.| +.||.|+++|+||+|.+.... ......++.+.+..+.+.
T Consensus 12 ~~~~li~~hg~~~~~~-------~~~~~~~~l-~~~~~v~~~d~~G~G~s~~~~--------~~~~~~~~~~~~~~~i~~ 75 (251)
T TIGR02427 12 GAPVLVFINSLGTDLR-------MWDPVLPAL-TPDFRVLRYDKRGHGLSDAPE--------GPYSIEDLADDVLALLDH 75 (251)
T ss_pred CCCeEEEEcCcccchh-------hHHHHHHHh-hcccEEEEecCCCCCCCCCCC--------CCCCHHHHHHHHHHHHHH
Confidence 4589999999655432 233345555 468999999999998764321 122355555555555443
Q ss_pred CCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCcccccch-----------------------hhhhccCC
Q 008873 407 GLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTF-----------------------YTEKYMGL 463 (550)
Q Consensus 407 ~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-----------------------~~~~~~g~ 463 (550)
- +.+++.++|||+||++++.++.++|++++++++.++.........+ +...+...
T Consensus 76 ~--~~~~v~liG~S~Gg~~a~~~a~~~p~~v~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (251)
T TIGR02427 76 L--GIERAVFCGLSLGGLIAQGLAARRPDRVRALVLSNTAAKIGTPESWNARIAAVRAEGLAALADAVLERWFTPGFREA 153 (251)
T ss_pred h--CCCceEEEEeCchHHHHHHHHHHCHHHhHHHhhccCccccCchhhHHHHHhhhhhccHHHHHHHHHHHHcccccccC
Confidence 2 4468999999999999999999999999988887754322110000 00000000
Q ss_pred CCCC------------c-------cccccCChhhhhhcCCCcEEEEecCCCCCCChHHHHHHHHHHHHcCCCeEEEEcCC
Q 008873 464 PSED------------P-------VGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPD 524 (550)
Q Consensus 464 ~~~~------------~-------~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p~ 524 (550)
.... . ..+...+....+.++++|+|+++|++|..+|.+....+.+.+ ...+++++|+
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Pvlii~g~~D~~~~~~~~~~~~~~~----~~~~~~~~~~ 229 (251)
T TIGR02427 154 HPARLDLYRNMLVRQPPDGYAGCCAAIRDADFRDRLGAIAVPTLCIAGDQDGSTPPELVREIADLV----PGARFAEIRG 229 (251)
T ss_pred ChHHHHHHHHHHHhcCHHHHHHHHHHHhcccHHHHhhhcCCCeEEEEeccCCcCChHHHHHHHHhC----CCceEEEECC
Confidence 0000 0 001111223446678899999999999999998777776654 3468899999
Q ss_pred CCCcCCCCCcHHHHHHHHHHHH
Q 008873 525 ERHMPRRHRDRIYMEERIWEFI 546 (550)
Q Consensus 525 ~~H~~~~~~~~~~~~~~~~~fl 546 (550)
++|.+. .++...+.+.+.+||
T Consensus 230 ~gH~~~-~~~p~~~~~~i~~fl 250 (251)
T TIGR02427 230 AGHIPC-VEQPEAFNAALRDFL 250 (251)
T ss_pred CCCccc-ccChHHHHHHHHHHh
Confidence 999874 356677788888886
No 66
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.72 E-value=3.3e-15 Score=151.40 Aligned_cols=191 Identities=18% Similarity=0.163 Sum_probs=140.2
Q ss_pred EEEEEEECCCCceEEEEcccCCCCCCCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCceee
Q 008873 59 VRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVN 138 (550)
Q Consensus 59 ~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~ 138 (550)
.+|+++|.+++..++++.. ...+.+++|||||+.|++...+. ...+||++++++|+.++|+...+. .
T Consensus 179 ~~l~~~d~~g~~~~~l~~~---------~~~~~~p~wSpDG~~la~~s~~~-~~~~l~~~~l~~g~~~~l~~~~g~---~ 245 (430)
T PRK00178 179 YTLQRSDYDGARAVTLLQS---------REPILSPRWSPDGKRIAYVSFEQ-KRPRIFVQNLDTGRREQITNFEGL---N 245 (430)
T ss_pred eEEEEECCCCCCceEEecC---------CCceeeeeECCCCCEEEEEEcCC-CCCEEEEEECCCCCEEEccCCCCC---c
Confidence 4789999999888777432 34567899999999999887654 346899999999998888753321 0
Q ss_pred ccCccccCCCCCccCCCc--EEEEEccCCccEEEEEeCCCceeecccccCeEEEEEEeEeecCCEEEEEEcCCCCceeEE
Q 008873 139 LHDCFTPLDKGVTKYSGG--FIWASEKTGFRHLYLHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHL 216 (550)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~--~~~~s~~~g~~~l~~~~~~~~~~~~lT~~~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l 216 (550)
.. +.|++|+ ++|...++|..+||++++++++.++||........+ .|+|||+.|+|.+++.+. .+|
T Consensus 246 ----~~-----~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~-~~spDg~~i~f~s~~~g~--~~i 313 (430)
T PRK00178 246 ----GA-----PAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLSRVTNHPAIDTEP-FWGKDGRTLYFTSDRGGK--PQI 313 (430)
T ss_pred ----CC-----eEECCCCCEEEEEEccCCCceEEEEECCCCCeEEcccCCCCcCCe-EECCCCCEEEEEECCCCC--ceE
Confidence 01 1355554 777777788899999999999999999765433344 499999999999877653 689
Q ss_pred EEEEeCCCCCCCCCCCeeeCCCCc-eEEEEECCCCCEEEEeecCCCCCCEEEEEEcCCCceeEeccC
Q 008873 217 YCAKLYPDWNHTLEAPVKLTNGKG-KHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLYE 282 (550)
Q Consensus 217 ~~v~~~~~g~~~~~~~~~lt~~~~-~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~~~~~l~~ 282 (550)
|.+++ .++ +.++++.... ...+.|||||++++++.... ....|+++++.+++ .+.++.
T Consensus 314 y~~d~--~~g----~~~~lt~~~~~~~~~~~Spdg~~i~~~~~~~-~~~~l~~~dl~tg~-~~~lt~ 372 (430)
T PRK00178 314 YKVNV--NGG----RAERVTFVGNYNARPRLSADGKTLVMVHRQD-GNFHVAAQDLQRGS-VRILTD 372 (430)
T ss_pred EEEEC--CCC----CEEEeecCCCCccceEECCCCCEEEEEEccC-CceEEEEEECCCCC-EEEccC
Confidence 99998 333 4567765432 34468999999999886543 34579999997776 466664
No 67
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.72 E-value=2.5e-15 Score=151.80 Aligned_cols=193 Identities=18% Similarity=0.170 Sum_probs=140.1
Q ss_pred eEEEEEEECCCCceEEEEcccCCCCCCCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCcee
Q 008873 58 KVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWV 137 (550)
Q Consensus 58 ~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~~ 137 (550)
..+|+++|.+++..++++. ....+..++|||||+.|++...+. ...+||++++++|+.++|+...+..
T Consensus 183 ~~~l~i~D~~g~~~~~lt~---------~~~~v~~p~wSpDg~~la~~s~~~-~~~~l~~~dl~~g~~~~l~~~~g~~-- 250 (433)
T PRK04922 183 RYALQVADSDGYNPQTILR---------SAEPILSPAWSPDGKKLAYVSFER-GRSAIYVQDLATGQRELVASFRGIN-- 250 (433)
T ss_pred eEEEEEECCCCCCceEeec---------CCCccccccCCCCCCEEEEEecCC-CCcEEEEEECCCCCEEEeccCCCCc--
Confidence 3579999999888887743 234567899999999999886543 3567999999999988887543211
Q ss_pred eccCccccCCCCCccCCCc--EEEEEccCCccEEEEEeCCCceeecccccCeEEEEEEeEeecCCEEEEEEcCCCCceeE
Q 008873 138 NLHDCFTPLDKGVTKYSGG--FIWASEKTGFRHLYLHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESH 215 (550)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~--~~~~s~~~g~~~l~~~~~~~~~~~~lT~~~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~ 215 (550)
. . +.|++|+ +++...++|..+||++++++++.++||.+......+ .|+|||++|+|.+++.+. .+
T Consensus 251 -~----~-----~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~-~~spDG~~l~f~sd~~g~--~~ 317 (433)
T PRK04922 251 -G----A-----PSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLTRLTNHFGIDTEP-TWAPDGKSIYFTSDRGGR--PQ 317 (433)
T ss_pred -c----C-----ceECCCCCEEEEEEeCCCCceEEEEECCCCCeEECccCCCCccce-EECCCCCEEEEEECCCCC--ce
Confidence 0 1 1345554 667777778889999999999999999764333334 599999999999887653 68
Q ss_pred EEEEEeCCCCCCCCCCCeeeCCCCc-eEEEEECCCCCEEEEeecCCCCCCEEEEEEcCCCceeEeccCC
Q 008873 216 LYCAKLYPDWNHTLEAPVKLTNGKG-KHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLYEQ 283 (550)
Q Consensus 216 l~~v~~~~~g~~~~~~~~~lt~~~~-~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~~~~~l~~~ 283 (550)
||.+++ .++ +.++++.... ...+.|||||++|++.... .....|+++++.+++ .+.++..
T Consensus 318 iy~~dl--~~g----~~~~lt~~g~~~~~~~~SpDG~~Ia~~~~~-~~~~~I~v~d~~~g~-~~~Lt~~ 378 (433)
T PRK04922 318 IYRVAA--SGG----SAERLTFQGNYNARASVSPDGKKIAMVHGS-GGQYRIAVMDLSTGS-VRTLTPG 378 (433)
T ss_pred EEEEEC--CCC----CeEEeecCCCCccCEEECCCCCEEEEEECC-CCceeEEEEECCCCC-eEECCCC
Confidence 999998 443 4567775433 3456899999999988653 233489999987776 4566643
No 68
>TIGR02240 PHA_depoly_arom poly(3-hydroxyalkanoate) depolymerase. This family consists of the polyhydroxyalkanoic acid (PHA) depolymerase of Pseudomonas oleovorans, Pseudomonas putida BM01, and related species. This enzyme is part of polyester storage and mobilization system as in many bacteria. However, species containing this enzyme are unusual in their capacity to produce aromatic polyesters when grown on carbon sources such as benzoic acid or phenylacetic acid.
Probab=99.72 E-value=2.7e-16 Score=149.56 Aligned_cols=213 Identities=18% Similarity=0.153 Sum_probs=134.2
Q ss_pred CCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCchhhHHHHhh
Q 008873 307 DGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKH 386 (550)
Q Consensus 307 ~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~~~~~~~~~ 386 (550)
+|.+++++..... ...|.||++||.+.+.. .|....+.|.+ +|.|+++|+||+|.+...-.
T Consensus 10 ~~~~~~~~~~~~~------~~~~plvllHG~~~~~~-------~w~~~~~~L~~-~~~vi~~Dl~G~G~S~~~~~----- 70 (276)
T TIGR02240 10 DGQSIRTAVRPGK------EGLTPLLIFNGIGANLE-------LVFPFIEALDP-DLEVIAFDVPGVGGSSTPRH----- 70 (276)
T ss_pred CCcEEEEEEecCC------CCCCcEEEEeCCCcchH-------HHHHHHHHhcc-CceEEEECCCCCCCCCCCCC-----
Confidence 6777877654211 12256788999655532 23334555544 79999999999998753211
Q ss_pred ccCCCchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCcc---cc-------cc--
Q 008873 387 NCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWD---GY-------DT-- 454 (550)
Q Consensus 387 ~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~---~~-------~~-- 454 (550)
...++++.+.+..+.+.- +.+++.|+||||||++++.++.++|++++++|+.++..... .. ..
T Consensus 71 ---~~~~~~~~~~~~~~i~~l--~~~~~~LvG~S~GG~va~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~ 145 (276)
T TIGR02240 71 ---PYRFPGLAKLAARMLDYL--DYGQVNAIGVSWGGALAQQFAHDYPERCKKLILAATAAGAVMVPGKPKVLMMMASPR 145 (276)
T ss_pred ---cCcHHHHHHHHHHHHHHh--CcCceEEEEECHHHHHHHHHHHHCHHHhhheEEeccCCccccCCCchhHHHHhcCch
Confidence 112333333333333321 34679999999999999999999999999999988754211 00 00
Q ss_pred hhh---------hhccCCCC-CCcc---c-------------cc------cCChhhhhhcCCCcEEEEecCCCCCCChHH
Q 008873 455 FYT---------EKYMGLPS-EDPV---G-------------YE------YSSVMHHVHKMKGKLLLVHGMIDENVHFRH 502 (550)
Q Consensus 455 ~~~---------~~~~g~~~-~~~~---~-------------~~------~~~~~~~~~~i~~P~lii~G~~D~~v~~~~ 502 (550)
.+. ..+.+... .+++ . +. .......+.++++|+|+++|+.|..+|+..
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~~v~~~~ 225 (276)
T TIGR02240 146 RYIQPSHGIHIAPDIYGGAFRRDPELAMAHASKVRSGGKLGYYWQLFAGLGWTSIHWLHKIQQPTLVLAGDDDPIIPLIN 225 (276)
T ss_pred hhhccccccchhhhhccceeeccchhhhhhhhhcccCCCchHHHHHHHHcCCchhhHhhcCCCCEEEEEeCCCCcCCHHH
Confidence 000 00000000 0000 0 00 011123467889999999999999999998
Q ss_pred HHHHHHHHHHcCCCeEEEEcCCCCCcCCCCCcHHHHHHHHHHHHHHh
Q 008873 503 TARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIERT 549 (550)
Q Consensus 503 ~~~~~~~l~~~~~~~~~~~~p~~~H~~~~~~~~~~~~~~~~~fl~~~ 549 (550)
+.++.+.+ ...++.++++ +|.+ ..+....+.+.+.+|+++.
T Consensus 226 ~~~l~~~~----~~~~~~~i~~-gH~~-~~e~p~~~~~~i~~fl~~~ 266 (276)
T TIGR02240 226 MRLLAWRI----PNAELHIIDD-GHLF-LITRAEAVAPIIMKFLAEE 266 (276)
T ss_pred HHHHHHhC----CCCEEEEEcC-CCch-hhccHHHHHHHHHHHHHHh
Confidence 88887655 3457777875 9987 4467788999999999863
No 69
>PLN02965 Probable pheophorbidase
Probab=99.72 E-value=2.2e-16 Score=148.21 Aligned_cols=198 Identities=15% Similarity=0.092 Sum_probs=126.1
Q ss_pred EEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCchhhHHHHhhccCCCchHHHHHHHHHHHHcCCC
Q 008873 330 TLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLA 409 (550)
Q Consensus 330 ~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~ 409 (550)
.||++||.+.+.. .|......|++.||.|+++|+||+|.+..... ....++++.+.+..+.+. +
T Consensus 5 ~vvllHG~~~~~~-------~w~~~~~~L~~~~~~via~Dl~G~G~S~~~~~-------~~~~~~~~a~dl~~~l~~--l 68 (255)
T PLN02965 5 HFVFVHGASHGAW-------CWYKLATLLDAAGFKSTCVDLTGAGISLTDSN-------TVSSSDQYNRPLFALLSD--L 68 (255)
T ss_pred EEEEECCCCCCcC-------cHHHHHHHHhhCCceEEEecCCcCCCCCCCcc-------ccCCHHHHHHHHHHHHHh--c
Confidence 4889999766543 34556778888899999999999997753211 012234444333333332 1
Q ss_pred CC-CceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcC--Cccc-ccc----------hhh----h-------------
Q 008873 410 KV-GHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVT--SWDG-YDT----------FYT----E------------- 458 (550)
Q Consensus 410 d~-~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~--~~~~-~~~----------~~~----~------------- 458 (550)
+. .++.++||||||.+++.++.++|++++.+|..++.. .... ... .+. .
T Consensus 69 ~~~~~~~lvGhSmGG~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (255)
T PLN02965 69 PPDHKVILVGHSIGGGSVTEALCKFTDKISMAIYVAAAMVKPGSIISPRLKNVMEGTEKIWDYTFGEGPDKPPTGIMMKP 148 (255)
T ss_pred CCCCCEEEEecCcchHHHHHHHHhCchheeEEEEEccccCCCCCCccHHHHhhhhccccceeeeeccCCCCCcchhhcCH
Confidence 22 489999999999999999999999999998877541 1000 000 000 0
Q ss_pred ----h-ccCC-CCCC---------ccccccC-Ch---hhhhhcCCCcEEEEecCCCCCCChHHHHHHHHHHHHcCCCeEE
Q 008873 459 ----K-YMGL-PSED---------PVGYEYS-SV---MHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEI 519 (550)
Q Consensus 459 ----~-~~g~-~~~~---------~~~~~~~-~~---~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~ 519 (550)
. +... +.+. ....... .. .....++++|+|+++|++|..+|+..+..+.+.+ ...++
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vP~lvi~g~~D~~~~~~~~~~~~~~~----~~a~~ 224 (255)
T PLN02965 149 EFVRHYYYNQSPLEDYTLSSKLLRPAPVRAFQDLDKLPPNPEAEKVPRVYIKTAKDNLFDPVRQDVMVENW----PPAQT 224 (255)
T ss_pred HHHHHHHhcCCCHHHHHHHHHhcCCCCCcchhhhhhccchhhcCCCCEEEEEcCCCCCCCHHHHHHHHHhC----CcceE
Confidence 0 0000 0000 0000000 00 0123358899999999999999998887777654 34688
Q ss_pred EEcCCCCCcCCCCCcHHHHHHHHHHHHHH
Q 008873 520 LIFPDERHMPRRHRDRIYMEERIWEFIER 548 (550)
Q Consensus 520 ~~~p~~~H~~~~~~~~~~~~~~~~~fl~~ 548 (550)
++++++||.+ ..++.+.+.+.+.+|++.
T Consensus 225 ~~i~~~GH~~-~~e~p~~v~~~l~~~~~~ 252 (255)
T PLN02965 225 YVLEDSDHSA-FFSVPTTLFQYLLQAVSS 252 (255)
T ss_pred EEecCCCCch-hhcCHHHHHHHHHHHHHH
Confidence 9999999998 457788888888888764
No 70
>PRK10673 acyl-CoA esterase; Provisional
Probab=99.71 E-value=2.2e-16 Score=148.58 Aligned_cols=200 Identities=14% Similarity=0.062 Sum_probs=124.8
Q ss_pred CCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCchhhHHHHhhccCCCchHHHHHHHHHHHH
Q 008873 326 PPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIK 405 (550)
Q Consensus 326 ~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~~~~~~~~~~~~~~~~~D~~~~~~~l~~ 405 (550)
...|.||++||.++... .|......|+ .+|.|+++|.||+|.+...... ...+ ..+|+.+.++++
T Consensus 14 ~~~~~iv~lhG~~~~~~-------~~~~~~~~l~-~~~~vi~~D~~G~G~s~~~~~~-~~~~----~~~d~~~~l~~l-- 78 (255)
T PRK10673 14 HNNSPIVLVHGLFGSLD-------NLGVLARDLV-NDHDIIQVDMRNHGLSPRDPVM-NYPA----MAQDLLDTLDAL-- 78 (255)
T ss_pred CCCCCEEEECCCCCchh-------HHHHHHHHHh-hCCeEEEECCCCCCCCCCCCCC-CHHH----HHHHHHHHHHHc--
Confidence 34588999999766542 2333445554 5799999999999877532110 0011 134555555443
Q ss_pred cCCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCc-CCcc--cccchhh--------------------hhccC
Q 008873 406 QGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPV-TSWD--GYDTFYT--------------------EKYMG 462 (550)
Q Consensus 406 ~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~-~~~~--~~~~~~~--------------------~~~~g 462 (550)
..+++.|+||||||.+++.++.++|++++++++.++. ..+. .....+. ...+.
T Consensus 79 ----~~~~~~lvGhS~Gg~va~~~a~~~~~~v~~lvli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (255)
T PRK10673 79 ----QIEKATFIGHSMGGKAVMALTALAPDRIDKLVAIDIAPVDYHVRRHDEIFAAINAVSEAGATTRQQAAAIMRQHLN 154 (255)
T ss_pred ----CCCceEEEEECHHHHHHHHHHHhCHhhcceEEEEecCCCCccchhhHHHHHHHHHhhhcccccHHHHHHHHHHhcC
Confidence 3457999999999999999999999999998886431 1110 0000000 00000
Q ss_pred C---------CCCCc----------cccccCChhhhhhcCCCcEEEEecCCCCCCChHHHHHHHHHHHHcCCCeEEEEcC
Q 008873 463 L---------PSEDP----------VGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFP 523 (550)
Q Consensus 463 ~---------~~~~~----------~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p 523 (550)
. ..... ..+..........++++|+|+++|++|..++.+....+.+.+ .+.++.+++
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~G~~D~~~~~~~~~~~~~~~----~~~~~~~~~ 230 (255)
T PRK10673 155 EEGVIQFLLKSFVDGEWRFNVPVLWDQYPHIVGWEKIPAWPHPALFIRGGNSPYVTEAYRDDLLAQF----PQARAHVIA 230 (255)
T ss_pred CHHHHHHHHhcCCcceeEeeHHHHHHhHHHHhCCcccCCCCCCeEEEECCCCCCCCHHHHHHHHHhC----CCcEEEEeC
Confidence 0 00000 000000111123456789999999999999987666665543 467889999
Q ss_pred CCCCcCCCCCcHHHHHHHHHHHHHHh
Q 008873 524 DERHMPRRHRDRIYMEERIWEFIERT 549 (550)
Q Consensus 524 ~~~H~~~~~~~~~~~~~~~~~fl~~~ 549 (550)
+++|.+ ..+....+.+.+.+||+++
T Consensus 231 ~~gH~~-~~~~p~~~~~~l~~fl~~~ 255 (255)
T PRK10673 231 GAGHWV-HAEKPDAVLRAIRRYLNDK 255 (255)
T ss_pred CCCCee-eccCHHHHHHHHHHHHhcC
Confidence 999977 4566788899999999763
No 71
>PLN02872 triacylglycerol lipase
Probab=99.71 E-value=1.9e-16 Score=155.02 Aligned_cols=246 Identities=16% Similarity=0.142 Sum_probs=156.7
Q ss_pred CCCCCeEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccc--cchhHhHHHHhCCcEEEEECCC
Q 008873 294 QLEPPDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWIN--TVDMRAQYLRSKGILVWKLDNR 371 (550)
Q Consensus 294 ~~~~~~~~~~~~~~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~--~~~~~~~~l~~~G~~vv~~d~r 371 (550)
.-.+.|+..+++.||..|....+.+.....+..+.|+|+++||...+.. .|.. ....++..|+++||.|+++|.|
T Consensus 40 ~gy~~e~h~v~T~DGy~L~l~ri~~~~~~~~~~~~~~Vll~HGl~~ss~---~w~~~~~~~sla~~La~~GydV~l~n~R 116 (395)
T PLN02872 40 AGYSCTEHTIQTKDGYLLALQRVSSRNPRLGSQRGPPVLLQHGLFMAGD---AWFLNSPEQSLGFILADHGFDVWVGNVR 116 (395)
T ss_pred cCCCceEEEEECCCCcEEEEEEcCCCCCCCCCCCCCeEEEeCccccccc---ceeecCcccchHHHHHhCCCCccccccc
Confidence 3457799999999999998887754332112234578999999755433 2311 1123456788999999999999
Q ss_pred CCCCC-chhhHHHHh-----hccCCCchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhCCC---eeEEEEE
Q 008873 372 GTARR-GLKFEASIK-----HNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPD---VFQCAVS 442 (550)
Q Consensus 372 G~g~~-~~~~~~~~~-----~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~---~~~~~v~ 442 (550)
|++.+ +........ -.+......|+.++++++.+.. .+++.++|||+||.+++.++ .+|+ +++++++
T Consensus 117 G~~~s~gh~~~~~~~~~fw~~s~~e~a~~Dl~a~id~i~~~~---~~~v~~VGhS~Gg~~~~~~~-~~p~~~~~v~~~~~ 192 (395)
T PLN02872 117 GTRWSYGHVTLSEKDKEFWDWSWQELALYDLAEMIHYVYSIT---NSKIFIVGHSQGTIMSLAAL-TQPNVVEMVEAAAL 192 (395)
T ss_pred ccccccCCCCCCccchhccCCcHHHHHHHHHHHHHHHHHhcc---CCceEEEEECHHHHHHHHHh-hChHHHHHHHHHHH
Confidence 97643 211000000 0111112469999999997653 36899999999999998665 4665 4666677
Q ss_pred cCCcCCcccc---------------------------cc-hhh---h--------------hccCC--------------
Q 008873 443 GAPVTSWDGY---------------------------DT-FYT---E--------------KYMGL-------------- 463 (550)
Q Consensus 443 ~~~~~~~~~~---------------------------~~-~~~---~--------------~~~g~-------------- 463 (550)
.+|+..+... .. ... . .+.|.
T Consensus 193 l~P~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~C~~~~~c~~~~~~~~g~~~~~n~~~~~~~~~ 272 (395)
T PLN02872 193 LCPISYLDHVTAPLVLRMVFMHLDQMVVAMGIHQLNFRSDVLVKLLDSICEGHMDCNDLLTSITGTNCCFNASRIDYYLE 272 (395)
T ss_pred hcchhhhccCCCHHHHHHHHHhHHHHHHHhcCceecCCcHHHHHHHHHHccCchhHHHHHHHHhCCCcccchhhhhHHHh
Confidence 7765321100 00 000 0 00010
Q ss_pred --CC---------------------------CCcccccc-CChhhhhhcC--CCcEEEEecCCCCCCChHHHHHHHHHHH
Q 008873 464 --PS---------------------------EDPVGYEY-SSVMHHVHKM--KGKLLLVHGMIDENVHFRHTARLINALV 511 (550)
Q Consensus 464 --~~---------------------------~~~~~~~~-~~~~~~~~~i--~~P~lii~G~~D~~v~~~~~~~~~~~l~ 511 (550)
|. .+...|.. ..|...++++ ++|+++++|++|..+++....++.+.+.
T Consensus 273 ~~pagtS~k~~~H~~Q~~~s~~f~~yDyg~~~n~~~Yg~~~pP~Y~l~~i~~~~Pv~i~~G~~D~lv~~~dv~~l~~~Lp 352 (395)
T PLN02872 273 YEPHPSSVKNLRHLFQMIRKGTFAHYDYGIFKNLKLYGQVNPPAFDLSLIPKSLPLWMGYGGTDGLADVTDVEHTLAELP 352 (395)
T ss_pred cCCCcchHHHHHHHHHHHhcCCcccCCCCchhhHHHhCCCCCCCcCcccCCCCccEEEEEcCCCCCCCHHHHHHHHHHCC
Confidence 00 01111211 1234456777 4799999999999999998888887763
Q ss_pred HcCCCeEEEEcCCCCCc--CCCCCcHHHHHHHHHHHHHHh
Q 008873 512 AARKPYEILIFPDERHM--PRRHRDRIYMEERIWEFIERT 549 (550)
Q Consensus 512 ~~~~~~~~~~~p~~~H~--~~~~~~~~~~~~~~~~fl~~~ 549 (550)
...++..+++.+|. +...+..+.+++.+++||+++
T Consensus 353 ---~~~~l~~l~~~gH~dfi~~~eape~V~~~Il~fL~~~ 389 (395)
T PLN02872 353 ---SKPELLYLENYGHIDFLLSTSAKEDVYNHMIQFFRSL 389 (395)
T ss_pred ---CccEEEEcCCCCCHHHHhCcchHHHHHHHHHHHHHHh
Confidence 23578889999996 446677888999999999875
No 72
>COG2945 Predicted hydrolase of the alpha/beta superfamily [General function prediction only]
Probab=99.70 E-value=6.9e-16 Score=128.20 Aligned_cols=201 Identities=21% Similarity=0.333 Sum_probs=140.2
Q ss_pred eEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCch
Q 008873 299 DIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGL 378 (550)
Q Consensus 299 ~~~~~~~~~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~ 378 (550)
..+.+...-|. +.+. +.|... ...|+.|.+|--|.... .+........+..|.++||+++.+|+||.|++..
T Consensus 5 ~~v~i~Gp~G~-le~~-~~~~~~----~~~~iAli~HPHPl~gG--tm~nkvv~~la~~l~~~G~atlRfNfRgVG~S~G 76 (210)
T COG2945 5 PTVIINGPAGR-LEGR-YEPAKT----PAAPIALICHPHPLFGG--TMNNKVVQTLARALVKRGFATLRFNFRGVGRSQG 76 (210)
T ss_pred CcEEecCCccc-ceec-cCCCCC----CCCceEEecCCCccccC--ccCCHHHHHHHHHHHhCCceEEeecccccccccC
Confidence 44566655553 4444 334332 45689999987544322 1111122234667889999999999999998876
Q ss_pred hhHHHHhhccCCCchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCcccccchhhh
Q 008873 379 KFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTFYTE 458 (550)
Q Consensus 379 ~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 458 (550)
+|. .|..+.+|..++++|+.++.. +..-..+.|+|+|+++++.++.+.|+. ...++.+|... .++
T Consensus 77 ~fD------~GiGE~~Da~aaldW~~~~hp-~s~~~~l~GfSFGa~Ia~~la~r~~e~-~~~is~~p~~~--~~d----- 141 (210)
T COG2945 77 EFD------NGIGELEDAAAALDWLQARHP-DSASCWLAGFSFGAYIAMQLAMRRPEI-LVFISILPPIN--AYD----- 141 (210)
T ss_pred ccc------CCcchHHHHHHHHHHHHhhCC-CchhhhhcccchHHHHHHHHHHhcccc-cceeeccCCCC--chh-----
Confidence 654 456679999999999998742 333457899999999999999987764 44555555433 011
Q ss_pred hccCCCCCCccccccCChhhhhhcCCCcEEEEecCCCCCCChHHHHHHHHHHHHcCCCeEEEEcCCCCCcCCCCCcHHHH
Q 008873 459 KYMGLPSEDPVGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYM 538 (550)
Q Consensus 459 ~~~g~~~~~~~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p~~~H~~~~~~~~~~~ 538 (550)
...+.....|.++|+|+.|+.+.+....+..+ +.+.++++.++++|.|.. ....+
T Consensus 142 ------------------fs~l~P~P~~~lvi~g~~Ddvv~l~~~l~~~~-----~~~~~~i~i~~a~HFF~g--Kl~~l 196 (210)
T COG2945 142 ------------------FSFLAPCPSPGLVIQGDADDVVDLVAVLKWQE-----SIKITVITIPGADHFFHG--KLIEL 196 (210)
T ss_pred ------------------hhhccCCCCCceeEecChhhhhcHHHHHHhhc-----CCCCceEEecCCCceecc--cHHHH
Confidence 12233445799999999999999887777654 467889999999999843 55677
Q ss_pred HHHHHHHHH
Q 008873 539 EERIWEFIE 547 (550)
Q Consensus 539 ~~~~~~fl~ 547 (550)
.+.+.+||.
T Consensus 197 ~~~i~~~l~ 205 (210)
T COG2945 197 RDTIADFLE 205 (210)
T ss_pred HHHHHHHhh
Confidence 888899983
No 73
>TIGR01250 pro_imino_pep_2 proline-specific peptidases, Bacillus coagulans-type subfamily. This model describes a subfamily of the alpha/beta fold family of hydrolases. Characterized members include prolinases (Pro-Xaa dipeptidase, EC 3.4.13.8), prolyl aminopeptidases (EC 3.4.11.5), and a leucyl aminopeptidase
Probab=99.70 E-value=5.9e-16 Score=148.30 Aligned_cols=201 Identities=15% Similarity=0.194 Sum_probs=125.8
Q ss_pred ceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCchhhHHHHhhccCCCchHHHHHHHHHHHHcC
Q 008873 328 YKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQG 407 (550)
Q Consensus 328 ~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~ 407 (550)
.|.||++||++++.. . .+......+.+.||.|+++|.||+|.+....... ....+++..+.+..+.++-
T Consensus 25 ~~~vl~~hG~~g~~~--~----~~~~~~~~l~~~g~~vi~~d~~G~G~s~~~~~~~-----~~~~~~~~~~~~~~~~~~~ 93 (288)
T TIGR01250 25 KIKLLLLHGGPGMSH--E----YLENLRELLKEEGREVIMYDQLGCGYSDQPDDSD-----ELWTIDYFVDELEEVREKL 93 (288)
T ss_pred CCeEEEEcCCCCccH--H----HHHHHHHHHHhcCCEEEEEcCCCCCCCCCCCccc-----ccccHHHHHHHHHHHHHHc
Confidence 367888999876642 1 1233455566669999999999998764321100 0123455555555555442
Q ss_pred CCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCcccc-----------cchhh---h---------------
Q 008873 408 LAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGY-----------DTFYT---E--------------- 458 (550)
Q Consensus 408 ~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~~~-----------~~~~~---~--------------- 458 (550)
+.+++.++||||||.+++.++..+|++++++++.+++...... ..... .
T Consensus 94 --~~~~~~liG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (288)
T TIGR01250 94 --GLDKFYLLGHSWGGMLAQEYALKYGQHLKGLIISSMLDSAPEYVKELNRLRKELPPEVRAAIKRCEASGDYDNPEYQE 171 (288)
T ss_pred --CCCcEEEEEeehHHHHHHHHHHhCccccceeeEecccccchHHHHHHHHHHhhcChhHHHHHHHHHhccCcchHHHHH
Confidence 3457999999999999999999999999999987765321100 00000 0
Q ss_pred ---hcc----CCCCC------------Ccc---------------ccccCChhhhhhcCCCcEEEEecCCCCCCChHHHH
Q 008873 459 ---KYM----GLPSE------------DPV---------------GYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTA 504 (550)
Q Consensus 459 ---~~~----g~~~~------------~~~---------------~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~ 504 (550)
.+. ..... ... .+........+.++++|+|+++|+.|. +++....
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~-~~~~~~~ 250 (288)
T TIGR01250 172 AVEVFYHHLLCRTRKWPEALKHLKSGMNTNVYNIMQGPNEFTITGNLKDWDITDKLSEIKVPTLLTVGEFDT-MTPEAAR 250 (288)
T ss_pred HHHHHHHHhhcccccchHHHHHHhhccCHHHHhcccCCccccccccccccCHHHHhhccCCCEEEEecCCCc-cCHHHHH
Confidence 000 00000 000 000112234567788999999999997 4666666
Q ss_pred HHHHHHHHcCCCeEEEEcCCCCCcCCCCCcHHHHHHHHHHHHH
Q 008873 505 RLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIE 547 (550)
Q Consensus 505 ~~~~~l~~~~~~~~~~~~p~~~H~~~~~~~~~~~~~~~~~fl~ 547 (550)
.+.+.+ ...+++++++++|.+.. +....+.+.+.+||+
T Consensus 251 ~~~~~~----~~~~~~~~~~~gH~~~~-e~p~~~~~~i~~fl~ 288 (288)
T TIGR01250 251 EMQELI----AGSRLVVFPDGSHMTMI-EDPEVYFKLLSDFIR 288 (288)
T ss_pred HHHHhc----cCCeEEEeCCCCCCccc-CCHHHHHHHHHHHhC
Confidence 555443 35678899999998744 577888888888874
No 74
>PF02230 Abhydrolase_2: Phospholipase/Carboxylesterase; InterPro: IPR003140 This entry represents the alpha/beta hydrolase domain found in phospholipases [], carboxylesterases [] and thioesterases.; GO: 0016787 hydrolase activity; PDB: 3U0V_A 1AUR_A 1AUO_B 1FJ2_B 3CN9_A 3CN7_A.
Probab=99.70 E-value=3e-16 Score=142.85 Aligned_cols=116 Identities=21% Similarity=0.224 Sum_probs=86.8
Q ss_pred CCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCcccccchhhhhccCCCCCCccccccCChhhhhhcC-CC
Q 008873 407 GLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTFYTEKYMGLPSEDPVGYEYSSVMHHVHKM-KG 485 (550)
Q Consensus 407 ~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i-~~ 485 (550)
..++++||++.|+|+||.+++.++.++|..+.++++.+|....... ........ ++
T Consensus 100 ~~i~~~ri~l~GFSQGa~~al~~~l~~p~~~~gvv~lsG~~~~~~~-----------------------~~~~~~~~~~~ 156 (216)
T PF02230_consen 100 YGIDPSRIFLGGFSQGAAMALYLALRYPEPLAGVVALSGYLPPESE-----------------------LEDRPEALAKT 156 (216)
T ss_dssp TT--GGGEEEEEETHHHHHHHHHHHCTSSTSSEEEEES---TTGCC-----------------------CHCCHCCCCTS
T ss_pred cCCChhheehhhhhhHHHHHHHHHHHcCcCcCEEEEeecccccccc-----------------------ccccccccCCC
Confidence 3489999999999999999999999999999999999875431100 00011111 57
Q ss_pred cEEEEecCCCCCCChHHHHHHHHHHHHcCCCeEEEEcCCCCCcCCCCCcHHHHHHHHHHHHHHhC
Q 008873 486 KLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIERTL 550 (550)
Q Consensus 486 P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p~~~H~~~~~~~~~~~~~~~~~fl~~~l 550 (550)
|++++||..|+++|.+.+.+..+.|++.+.++++..|++.+|.+. .+.++.+.+||++++
T Consensus 157 pi~~~hG~~D~vvp~~~~~~~~~~L~~~~~~v~~~~~~g~gH~i~-----~~~~~~~~~~l~~~~ 216 (216)
T PF02230_consen 157 PILIIHGDEDPVVPFEWAEKTAEFLKAAGANVEFHEYPGGGHEIS-----PEELRDLREFLEKHI 216 (216)
T ss_dssp -EEEEEETT-SSSTHHHHHHHHHHHHCTT-GEEEEEETT-SSS-------HHHHHHHHHHHHHH-
T ss_pred cEEEEecCCCCcccHHHHHHHHHHHHhcCCCEEEEEcCCCCCCCC-----HHHHHHHHHHHhhhC
Confidence 999999999999999999999999999999999999999999883 356788999999875
No 75
>PF10503 Esterase_phd: Esterase PHB depolymerase
Probab=99.70 E-value=4.4e-16 Score=138.40 Aligned_cols=194 Identities=13% Similarity=0.108 Sum_probs=122.4
Q ss_pred EEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCchhhHHH-HhhccC
Q 008873 311 LYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEAS-IKHNCG 389 (550)
Q Consensus 311 l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~~~~~~-~~~~~~ 389 (550)
|.+.+|.|+... ..+.|+||++||..+... .+... ..+.++..++||+|+.|+.........-|... .....+
T Consensus 1 l~Y~lYvP~~~~--~~~~PLVv~LHG~~~~a~---~~~~~-s~~~~lAd~~GfivvyP~~~~~~~~~~cw~w~~~~~~~g 74 (220)
T PF10503_consen 1 LSYRLYVPPGAP--RGPVPLVVVLHGCGQSAE---DFAAG-SGWNALADREGFIVVYPEQSRRANPQGCWNWFSDDQQRG 74 (220)
T ss_pred CcEEEecCCCCC--CCCCCEEEEeCCCCCCHH---HHHhh-cCHHHHhhcCCeEEEcccccccCCCCCcccccccccccC
Confidence 457899998753 247899999999766532 12111 11234444689999999965332222222111 112234
Q ss_pred CCchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCccccc--chhhhhccCCCCCC
Q 008873 390 RIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYD--TFYTEKYMGLPSED 467 (550)
Q Consensus 390 ~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~~~~--~~~~~~~~g~~~~~ 467 (550)
..+...+.+.++++.++..||++||.+.|+|.||+|+..++..+|++|+++..++++..-.... ........+.. ..
T Consensus 75 ~~d~~~i~~lv~~v~~~~~iD~~RVyv~G~S~Gg~ma~~la~~~pd~faa~a~~sG~~~~~a~~~~~a~~~m~~g~~-~~ 153 (220)
T PF10503_consen 75 GGDVAFIAALVDYVAARYNIDPSRVYVTGLSNGGMMANVLACAYPDLFAAVAVVSGVPYGCAASGASALSAMRSGPR-PA 153 (220)
T ss_pred ccchhhHHHHHHhHhhhcccCCCceeeEEECHHHHHHHHHHHhCCccceEEEeecccccccccCcccHHHHhhCCCC-CC
Confidence 4466677888999999999999999999999999999999999999999999888763211100 00111111111 11
Q ss_pred ccccccCChhhhhhcC-CCcEEEEecCCCCCCChHHHHHHHHHHHHc
Q 008873 468 PVGYEYSSVMHHVHKM-KGKLLLVHGMIDENVHFRHTARLINALVAA 513 (550)
Q Consensus 468 ~~~~~~~~~~~~~~~i-~~P~lii~G~~D~~v~~~~~~~~~~~l~~~ 513 (550)
+..... ........ ..|++|+||+.|..|.+.++.++.+++...
T Consensus 154 p~~~~~--a~~~~g~~~~~P~~v~hG~~D~tV~~~n~~~~~~q~~~~ 198 (220)
T PF10503_consen 154 PAAAWG--ARSDAGAYPGYPRIVFHGTADTTVNPQNADQLVAQWLNV 198 (220)
T ss_pred hHHHHH--hhhhccCCCCCCEEEEecCCCCccCcchHHHHHHHHHHc
Confidence 111000 00001111 249999999999999999999999887654
No 76
>PLN02679 hydrolase, alpha/beta fold family protein
Probab=99.70 E-value=1.1e-15 Score=150.28 Aligned_cols=218 Identities=11% Similarity=0.075 Sum_probs=133.2
Q ss_pred EEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCchhhHHHHhhccC
Q 008873 310 VLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCG 389 (550)
Q Consensus 310 ~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~~~~~~~~~~~~ 389 (550)
++++...-+.+.. ...|.||++||.+.+.. .|......|++ +|.|+++|+||+|.+..... .
T Consensus 73 ~i~Y~~~G~g~~~---~~gp~lvllHG~~~~~~-------~w~~~~~~L~~-~~~via~Dl~G~G~S~~~~~-------~ 134 (360)
T PLN02679 73 SINYLVKGSPEVT---SSGPPVLLVHGFGASIP-------HWRRNIGVLAK-NYTVYAIDLLGFGASDKPPG-------F 134 (360)
T ss_pred eEEEEEecCcccC---CCCCeEEEECCCCCCHH-------HHHHHHHHHhc-CCEEEEECCCCCCCCCCCCC-------c
Confidence 6666655432110 12367899999766532 33444566655 79999999999998753211 0
Q ss_pred CCchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHh-hCCCeeEEEEEcCCcCCccc---ccc-----------
Q 008873 390 RIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLA-RFPDVFQCAVSGAPVTSWDG---YDT----------- 454 (550)
Q Consensus 390 ~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~-~~~~~~~~~v~~~~~~~~~~---~~~----------- 454 (550)
....++..+.+..+.+. +..+++.|+||||||.+++.++. .+|++++++|+.++...... ...
T Consensus 135 ~~~~~~~a~~l~~~l~~--l~~~~~~lvGhS~Gg~ia~~~a~~~~P~rV~~LVLi~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (360)
T PLN02679 135 SYTMETWAELILDFLEE--VVQKPTVLIGNSVGSLACVIAASESTRDLVRGLVLLNCAGGMNNKAVVDDWRIKLLLPLLW 212 (360)
T ss_pred cccHHHHHHHHHHHHHH--hcCCCeEEEEECHHHHHHHHHHHhcChhhcCEEEEECCccccccccccchHHHhhhcchHH
Confidence 11233333333333222 13468999999999999988876 46999999998876431100 000
Q ss_pred --------------hhh----hh----c----cCCCCC--------------C---ccccc-------cCChhhhhhcCC
Q 008873 455 --------------FYT----EK----Y----MGLPSE--------------D---PVGYE-------YSSVMHHVHKMK 484 (550)
Q Consensus 455 --------------~~~----~~----~----~g~~~~--------------~---~~~~~-------~~~~~~~~~~i~ 484 (550)
.+. .. . ...+.. . ...+. ..+....+.+++
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~ 292 (360)
T PLN02679 213 LIDFLLKQRGIASALFNRVKQRDNLKNILLSVYGNKEAVDDELVEIIRGPADDEGALDAFVSIVTGPPGPNPIKLIPRIS 292 (360)
T ss_pred HHHHHhhchhhHHHHHHHhcCHHHHHHHHHHhccCcccCCHHHHHHHHhhccCCChHHHHHHHHhcCCCCCHHHHhhhcC
Confidence 000 00 0 000000 0 00000 011223466788
Q ss_pred CcEEEEecCCCCCCChHHH-HHHHHHHHHcCCCeEEEEcCCCCCcCCCCCcHHHHHHHHHHHHHH
Q 008873 485 GKLLLVHGMIDENVHFRHT-ARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIER 548 (550)
Q Consensus 485 ~P~lii~G~~D~~v~~~~~-~~~~~~l~~~~~~~~~~~~p~~~H~~~~~~~~~~~~~~~~~fl~~ 548 (550)
+|+|+++|++|..+|+... .++++.+.+.-.+.++.++|++||.+ ..+..+.+.+.+.+||++
T Consensus 293 ~PtLii~G~~D~~~p~~~~~~~~~~~l~~~ip~~~l~~i~~aGH~~-~~E~Pe~~~~~I~~FL~~ 356 (360)
T PLN02679 293 LPILVLWGDQDPFTPLDGPVGKYFSSLPSQLPNVTLYVLEGVGHCP-HDDRPDLVHEKLLPWLAQ 356 (360)
T ss_pred CCEEEEEeCCCCCcCchhhHHHHHHhhhccCCceEEEEcCCCCCCc-cccCHHHHHHHHHHHHHh
Confidence 9999999999999998743 23445555544678999999999987 557788999999999975
No 77
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.70 E-value=8.4e-15 Score=147.66 Aligned_cols=184 Identities=18% Similarity=0.198 Sum_probs=133.5
Q ss_pred EEEEEEECCCCceEEEEcccCCCCCCCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCceee
Q 008873 59 VRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVN 138 (550)
Q Consensus 59 ~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~ 138 (550)
.+|+++|.++...+.++- ....+..|+|||||+.|++...+. +..+||+.++++|+.+.++......
T Consensus 184 ~~i~i~d~dg~~~~~lt~---------~~~~v~~p~wSPDG~~la~~s~~~-~~~~i~i~dl~tg~~~~l~~~~g~~--- 250 (429)
T PRK01742 184 YEVRVADYDGFNQFIVNR---------SSQPLMSPAWSPDGSKLAYVSFEN-KKSQLVVHDLRSGARKVVASFRGHN--- 250 (429)
T ss_pred EEEEEECCCCCCceEecc---------CCCccccceEcCCCCEEEEEEecC-CCcEEEEEeCCCCceEEEecCCCcc---
Confidence 578999999887666632 244567899999999999887543 3467999999999888876533210
Q ss_pred ccCccccCCCCCccCCCc--EEEEEccCCccEEEEEeCCCceeecccccCeEEEEEEeEeecCCEEEEEEcCCCCceeEE
Q 008873 139 LHDCFTPLDKGVTKYSGG--FIWASEKTGFRHLYLHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHL 216 (550)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~--~~~~s~~~g~~~l~~~~~~~~~~~~lT~~~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l 216 (550)
.. +.|++|+ +++.+.++|..+||++++++++.++||.+...+..+ .|+|||++|+|.+++.+. .+|
T Consensus 251 ----~~-----~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~-~wSpDG~~i~f~s~~~g~--~~I 318 (429)
T PRK01742 251 ----GA-----PAFSPDGSRLAFASSKDGVLNIYVMGANGGTPSQLTSGAGNNTEP-SWSPDGQSILFTSDRSGS--PQV 318 (429)
T ss_pred ----Cc-----eeECCCCCEEEEEEecCCcEEEEEEECCCCCeEeeccCCCCcCCE-EECCCCCEEEEEECCCCC--ceE
Confidence 01 1356655 666677788889999999998899999876555555 499999999999886653 699
Q ss_pred EEEEeCCCCCCCCCCCeeeCCCCceEEEEECCCCCEEEEeecCCCCCCEEEEEEcCCCceeEecc
Q 008873 217 YCAKLYPDWNHTLEAPVKLTNGKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLY 281 (550)
Q Consensus 217 ~~v~~~~~g~~~~~~~~~lt~~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~~~~~l~ 281 (550)
|.++. .+. ..++++.. + ..+.|||||++|++... ..++++|+.+|+. +.++
T Consensus 319 ~~~~~--~~~----~~~~l~~~-~-~~~~~SpDG~~ia~~~~-----~~i~~~Dl~~g~~-~~lt 369 (429)
T PRK01742 319 YRMSA--SGG----GASLVGGR-G-YSAQISADGKTLVMING-----DNVVKQDLTSGST-EVLS 369 (429)
T ss_pred EEEEC--CCC----CeEEecCC-C-CCccCCCCCCEEEEEcC-----CCEEEEECCCCCe-EEec
Confidence 99987 443 33455432 3 45679999999988754 3678889877763 4444
No 78
>COG0429 Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only]
Probab=99.70 E-value=7.8e-16 Score=139.90 Aligned_cols=235 Identities=14% Similarity=0.128 Sum_probs=147.8
Q ss_pred CCeEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCC
Q 008873 297 PPDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARR 376 (550)
Q Consensus 297 ~~~~~~~~~~~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~ 376 (550)
..+...+...||..+...+..++.. .+.|+||.+||-.++.. + +-...+...+.++||.||++|.||+++.
T Consensus 48 ~~~re~v~~pdg~~~~ldw~~~p~~----~~~P~vVl~HGL~G~s~--s---~y~r~L~~~~~~rg~~~Vv~~~Rgcs~~ 118 (345)
T COG0429 48 AYTRERLETPDGGFIDLDWSEDPRA----AKKPLVVLFHGLEGSSN--S---PYARGLMRALSRRGWLVVVFHFRGCSGE 118 (345)
T ss_pred ccceEEEEcCCCCEEEEeeccCccc----cCCceEEEEeccCCCCc--C---HHHHHHHHHHHhcCCeEEEEecccccCC
Confidence 3445566777776555555543222 46699999999555432 1 1123346677889999999999999876
Q ss_pred chhhHHHHhhccCCCchHHHHHHHHHHHHcCCCCCCceEEEEechhH-HHHHHHHhhCCC-eeEEEEEcCCcCCc-----
Q 008873 377 GLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGG-YLSAITLARFPD-VFQCAVSGAPVTSW----- 449 (550)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG-~~a~~~~~~~~~-~~~~~v~~~~~~~~----- 449 (550)
... ...-+.....+|+..+++++.++. -+.++.++|.|+|| +++.+++-+..+ ...|+++++-..|+
T Consensus 119 ~n~----~p~~yh~G~t~D~~~~l~~l~~~~--~~r~~~avG~SLGgnmLa~ylgeeg~d~~~~aa~~vs~P~Dl~~~~~ 192 (345)
T COG0429 119 ANT----SPRLYHSGETEDIRFFLDWLKARF--PPRPLYAVGFSLGGNMLANYLGEEGDDLPLDAAVAVSAPFDLEACAY 192 (345)
T ss_pred ccc----CcceecccchhHHHHHHHHHHHhC--CCCceEEEEecccHHHHHHHHHhhccCcccceeeeeeCHHHHHHHHH
Confidence 431 111222334699999999999864 35789999999999 555555543222 23444444332222
Q ss_pred ------c--cccch---hhh-------------------------------------hccCCCCCCccccccCChhhhhh
Q 008873 450 ------D--GYDTF---YTE-------------------------------------KYMGLPSEDPVGYEYSSVMHHVH 481 (550)
Q Consensus 450 ------~--~~~~~---~~~-------------------------------------~~~g~~~~~~~~~~~~~~~~~~~ 481 (550)
. .|... +.+ ..+|. .+..+.|+..|.+..+.
T Consensus 193 ~l~~~~s~~ly~r~l~~~L~~~~~~kl~~l~~~~p~~~~~~ik~~~ti~eFD~~~Tap~~Gf-~da~dYYr~aSs~~~L~ 271 (345)
T COG0429 193 RLDSGFSLRLYSRYLLRNLKRNAARKLKELEPSLPGTVLAAIKRCRTIREFDDLLTAPLHGF-ADAEDYYRQASSLPLLP 271 (345)
T ss_pred HhcCchhhhhhHHHHHHHHHHHHHHHHHhcCcccCcHHHHHHHhhchHHhccceeeecccCC-CcHHHHHHhcccccccc
Confidence 1 11000 000 00011 11235677889999999
Q ss_pred cCCCcEEEEecCCCCCCChHHHHHHHHHHHHcCCCeEEEEcCCCCCc-C-CCCC-cH-HHHHHHHHHHHHHhC
Q 008873 482 KMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHM-P-RRHR-DR-IYMEERIWEFIERTL 550 (550)
Q Consensus 482 ~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p~~~H~-~-~~~~-~~-~~~~~~~~~fl~~~l 550 (550)
+|++|+||||+.+|+.++++.--..... .+..+.+.+.+.+||. + .... +. ....+++.+||+..+
T Consensus 272 ~Ir~PtLii~A~DDP~~~~~~iP~~~~~---~np~v~l~~t~~GGHvGfl~~~~~~~~~W~~~ri~~~l~~~~ 341 (345)
T COG0429 272 KIRKPTLIINAKDDPFMPPEVIPKLQEM---LNPNVLLQLTEHGGHVGFLGGKLLHPQMWLEQRILDWLDPFL 341 (345)
T ss_pred ccccceEEEecCCCCCCChhhCCcchhc---CCCceEEEeecCCceEEeccCccccchhhHHHHHHHHHHHHH
Confidence 9999999999999999987543333221 4678999999999995 2 2122 22 256788999998653
No 79
>PLN03087 BODYGUARD 1 domain containing hydrolase; Provisional
Probab=99.70 E-value=1.9e-15 Score=150.67 Aligned_cols=224 Identities=12% Similarity=0.117 Sum_probs=141.6
Q ss_pred EEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHH---hCCcEEEEECCCCCCCCch
Q 008873 302 QIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLR---SKGILVWKLDNRGTARRGL 378 (550)
Q Consensus 302 ~~~~~~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~---~~G~~vv~~d~rG~g~~~~ 378 (550)
.+.+..+.++++....|.+. ...|.||++||.+.+.. .|.. .....|+ +.+|.|+++|+||+|.+..
T Consensus 179 ~~~~~~~~~l~~~~~gp~~~----~~k~~VVLlHG~~~s~~---~W~~---~~~~~L~~~~~~~yrVia~Dl~G~G~S~~ 248 (481)
T PLN03087 179 SWLSSSNESLFVHVQQPKDN----KAKEDVLFIHGFISSSA---FWTE---TLFPNFSDAAKSTYRLFAVDLLGFGRSPK 248 (481)
T ss_pred eeEeeCCeEEEEEEecCCCC----CCCCeEEEECCCCccHH---HHHH---HHHHHHHHHhhCCCEEEEECCCCCCCCcC
Confidence 44444567898888888753 22367899999866542 2321 1123333 4799999999999998753
Q ss_pred hhHHHHhhccCCCchHHHHHHH-HHHHHcCCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCcccc-----
Q 008873 379 KFEASIKHNCGRIDAEDQLTGA-EWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGY----- 452 (550)
Q Consensus 379 ~~~~~~~~~~~~~~~~D~~~~~-~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~~~----- 452 (550)
... ....+++..+.+ ..+.+.- +.+++.++||||||++++.++.++|++++++++.++.......
T Consensus 249 p~~-------~~ytl~~~a~~l~~~ll~~l--g~~k~~LVGhSmGG~iAl~~A~~~Pe~V~~LVLi~~~~~~~~~~~~~~ 319 (481)
T PLN03087 249 PAD-------SLYTLREHLEMIERSVLERY--KVKSFHIVAHSLGCILALALAVKHPGAVKSLTLLAPPYYPVPKGVQAT 319 (481)
T ss_pred CCC-------CcCCHHHHHHHHHHHHHHHc--CCCCEEEEEECHHHHHHHHHHHhChHhccEEEEECCCccccccchhHH
Confidence 211 112345555554 2344432 3468999999999999999999999999999998764321000
Q ss_pred -------------c---------chhhh--hcc-----------------CCCCCCccccc----cC--Ch---------
Q 008873 453 -------------D---------TFYTE--KYM-----------------GLPSEDPVGYE----YS--SV--------- 476 (550)
Q Consensus 453 -------------~---------~~~~~--~~~-----------------g~~~~~~~~~~----~~--~~--------- 476 (550)
. .++.. +.. -.+......+. .. ..
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~l~~~i 399 (481)
T PLN03087 320 QYVMRKVAPRRVWPPIAFGASVACWYEHISRTICLVICKNHRLWEFLTRLLTRNRMRTFLIEGFFCHTHNAAWHTLHNII 399 (481)
T ss_pred HHHHHHhcccccCCccccchhHHHHHHHHHhhhhcccccchHHHHHHHHHhhhhhhhHHHHHHHHhccchhhHHHHHHHH
Confidence 0 00000 000 00000000000 00 00
Q ss_pred ----------h-hhhhcCCCcEEEEecCCCCCCChHHHHHHHHHHHHcCCCeEEEEcCCCCCcCCCCCcHHHHHHHHHHH
Q 008873 477 ----------M-HHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEF 545 (550)
Q Consensus 477 ----------~-~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p~~~H~~~~~~~~~~~~~~~~~f 545 (550)
+ ...+++++|+|+++|++|..+|++.+..+.+.+ .+.+++++|++||.....+....+.+.+.+|
T Consensus 400 ~~~~~~l~~~l~~l~~~I~vPtLII~Ge~D~ivP~~~~~~la~~i----P~a~l~vI~~aGH~~~v~e~p~~fa~~L~~F 475 (481)
T PLN03087 400 CGSGSKLDGYLDHVRDQLKCDVAIFHGGDDELIPVECSYAVKAKV----PRARVKVIDDKDHITIVVGRQKEFARELEEI 475 (481)
T ss_pred hchhhhhhhHHHHHHHhCCCCEEEEEECCCCCCCHHHHHHHHHhC----CCCEEEEeCCCCCcchhhcCHHHHHHHHHHH
Confidence 0 111268899999999999999999888886665 4578999999999864446678888888888
Q ss_pred HHH
Q 008873 546 IER 548 (550)
Q Consensus 546 l~~ 548 (550)
++.
T Consensus 476 ~~~ 478 (481)
T PLN03087 476 WRR 478 (481)
T ss_pred hhc
Confidence 764
No 80
>TIGR01249 pro_imino_pep_1 proline iminopeptidase, Neisseria-type subfamily. This model represents one of two related families of proline iminopeptidase in the alpha/beta fold hydrolase family. The fine specificities of the various members, including both the range of short peptides from which proline can be removed and whether other amino acids such as alanine can be also removed, may vary among members.
Probab=99.69 E-value=1.3e-15 Score=146.83 Aligned_cols=219 Identities=15% Similarity=0.119 Sum_probs=134.9
Q ss_pred EEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCchhh
Q 008873 301 VQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKF 380 (550)
Q Consensus 301 ~~~~~~~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~~~ 380 (550)
..+...+|..+++..+.++ +.+.||++||++++... ......+...+|.|+++|+||+|.+....
T Consensus 7 ~~~~~~~~~~l~y~~~g~~-------~~~~lvllHG~~~~~~~--------~~~~~~~~~~~~~vi~~D~~G~G~S~~~~ 71 (306)
T TIGR01249 7 GYLNVSDNHQLYYEQSGNP-------DGKPVVFLHGGPGSGTD--------PGCRRFFDPETYRIVLFDQRGCGKSTPHA 71 (306)
T ss_pred CeEEcCCCcEEEEEECcCC-------CCCEEEEECCCCCCCCC--------HHHHhccCccCCEEEEECCCCCCCCCCCC
Confidence 3555667888877654321 12457889998765321 11233445678999999999999775321
Q ss_pred HHHHhhccCCCchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCcc----------
Q 008873 381 EASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWD---------- 450 (550)
Q Consensus 381 ~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~---------- 450 (550)
. .......|+.+.+..+.++- +.+++.++||||||++++.++.++|++++++|+.++.....
T Consensus 72 ~------~~~~~~~~~~~dl~~l~~~l--~~~~~~lvG~S~GG~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~ 143 (306)
T TIGR01249 72 C------LEENTTWDLVADIEKLREKL--GIKNWLVFGGSWGSTLALAYAQTHPEVVTGLVLRGIFLLREKEWSWFYEGG 143 (306)
T ss_pred C------cccCCHHHHHHHHHHHHHHc--CCCCEEEEEECHHHHHHHHHHHHChHhhhhheeeccccCCHHHHHHHHhcc
Confidence 0 01123456666666665542 34689999999999999999999999988888776532100
Q ss_pred ---cccchhh--------------------hhccCCCC-------------CC-------cccc------------cc--
Q 008873 451 ---GYDTFYT--------------------EKYMGLPS-------------ED-------PVGY------------EY-- 473 (550)
Q Consensus 451 ---~~~~~~~--------------------~~~~g~~~-------------~~-------~~~~------------~~-- 473 (550)
.+...+. ..+..... .. ...+ ..
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (306)
T TIGR01249 144 ASMIYPDAWQRFMDSIPENERNEQLVNAYHDRLQSGDEETKLAAAKAWVDWESTTLLRPINEIVSTAEDFKFSLAFARLE 223 (306)
T ss_pred hhhhCHHHHHHHhhhCChhhhhccHHHHHHHHccCCCHHHHHHHHHHHHHHhChhhcCCCCCccccccchHHHHHHHHHH
Confidence 0000000 00000000 00 0000 00
Q ss_pred ---------C----ChhhhhhcC-CCcEEEEecCCCCCCChHHHHHHHHHHHHcCCCeEEEEcCCCCCcCCCCCcHHHHH
Q 008873 474 ---------S----SVMHHVHKM-KGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYME 539 (550)
Q Consensus 474 ---------~----~~~~~~~~i-~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p~~~H~~~~~~~~~~~~ 539 (550)
. +....+.++ ++|+|++||++|..+|+..+.++++++ ...++++++++||....++ ..
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~i~~~P~lii~g~~D~~~p~~~~~~~~~~~----~~~~~~~~~~~gH~~~~~~----~~ 295 (306)
T TIGR01249 224 NHYFVNKGFLDVENFILDNISKIRNIPTYIVHGRYDLCCPLQSAWALHKAF----PEAELKVTNNAGHSAFDPN----NL 295 (306)
T ss_pred HhHHHHhchhcCchHHHHhhhhccCCCeEEEecCCCCCCCHHHHHHHHHhC----CCCEEEEECCCCCCCCChH----HH
Confidence 0 011234566 589999999999999999888887765 3578999999999975433 45
Q ss_pred HHHHHHHHHhC
Q 008873 540 ERIWEFIERTL 550 (550)
Q Consensus 540 ~~~~~fl~~~l 550 (550)
+.+.+|+..+|
T Consensus 296 ~~i~~~~~~~~ 306 (306)
T TIGR01249 296 AALVHALETYL 306 (306)
T ss_pred HHHHHHHHHhC
Confidence 67777777654
No 81
>KOG1515 consensus Arylacetamide deacetylase [Defense mechanisms]
Probab=99.68 E-value=5.4e-15 Score=139.45 Aligned_cols=225 Identities=16% Similarity=0.116 Sum_probs=154.3
Q ss_pred CCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHH-HhCCcEEEEECCCCCCCCchhhHHHHh
Q 008873 307 DGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYL-RSKGILVWKLDNRGTARRGLKFEASIK 385 (550)
Q Consensus 307 ~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l-~~~G~~vv~~d~rG~g~~~~~~~~~~~ 385 (550)
....+..++|+|..... ..+.|+|||+|||+.... ......++.+...+ .+.+..||++|||-....-
T Consensus 70 ~~~~l~vRly~P~~~~~-~~~~p~lvyfHGGGf~~~--S~~~~~y~~~~~~~a~~~~~vvvSVdYRLAPEh~-------- 138 (336)
T KOG1515|consen 70 PFTNLPVRLYRPTSSSS-ETKLPVLVYFHGGGFCLG--SANSPAYDSFCTRLAAELNCVVVSVDYRLAPEHP-------- 138 (336)
T ss_pred CCCCeEEEEEcCCCCCc-ccCceEEEEEeCCccEeC--CCCCchhHHHHHHHHHHcCeEEEecCcccCCCCC--------
Confidence 34558899999987632 268899999999876533 11122344445555 5789999999999765321
Q ss_pred hccCCCchHHHHHHHHHHHHc----CCCCCCceEEEEechhHHHHHHHHhhC------CCeeEEEEEcCCcCCcccccc-
Q 008873 386 HNCGRIDAEDQLTGAEWLIKQ----GLAKVGHIGLYGWSYGGYLSAITLARF------PDVFQCAVSGAPVTSWDGYDT- 454 (550)
Q Consensus 386 ~~~~~~~~~D~~~~~~~l~~~----~~~d~~~i~i~G~S~GG~~a~~~~~~~------~~~~~~~v~~~~~~~~~~~~~- 454 (550)
-...++|..+|+.|+.++ ..+|++||+|+|-|.||.+|..++.+. +..+++.|++.|+..-.....
T Consensus 139 ---~Pa~y~D~~~Al~w~~~~~~~~~~~D~~rv~l~GDSaGGNia~~va~r~~~~~~~~~ki~g~ili~P~~~~~~~~~~ 215 (336)
T KOG1515|consen 139 ---FPAAYDDGWAALKWVLKNSWLKLGADPSRVFLAGDSAGGNIAHVVAQRAADEKLSKPKIKGQILIYPFFQGTDRTES 215 (336)
T ss_pred ---CCccchHHHHHHHHHHHhHHHHhCCCcccEEEEccCccHHHHHHHHHHHhhccCCCcceEEEEEEecccCCCCCCCH
Confidence 123489999999999885 568999999999999999999887652 356899999999865322110
Q ss_pred -------------------hhhhhccCCCCCCccccccCChhh-----hhhcCC-CcEEEEecCCCCCCChHHHHHHHHH
Q 008873 455 -------------------FYTEKYMGLPSEDPVGYEYSSVMH-----HVHKMK-GKLLLVHGMIDENVHFRHTARLINA 509 (550)
Q Consensus 455 -------------------~~~~~~~g~~~~~~~~~~~~~~~~-----~~~~i~-~P~lii~G~~D~~v~~~~~~~~~~~ 509 (550)
+|. ..+.....+. .-...+|.. ...... .|+|++.++.|... .++..+.++
T Consensus 216 e~~~~~~~~~~~~~~~~~~~w~-~~lP~~~~~~-~~p~~np~~~~~~~d~~~~~lp~tlv~~ag~D~L~--D~~~~Y~~~ 291 (336)
T KOG1515|consen 216 EKQQNLNGSPELARPKIDKWWR-LLLPNGKTDL-DHPFINPVGNSLAKDLSGLGLPPTLVVVAGYDVLR--DEGLAYAEK 291 (336)
T ss_pred HHHHhhcCCcchhHHHHHHHHH-HhCCCCCCCc-CCccccccccccccCccccCCCceEEEEeCchhhh--hhhHHHHHH
Confidence 111 1111000000 000111211 111222 47999999999865 688999999
Q ss_pred HHHcCCCeEEEEcCCCCCcCC--CC--CcHHHHHHHHHHHHHHh
Q 008873 510 LVAARKPYEILIFPDERHMPR--RH--RDRIYMEERIWEFIERT 549 (550)
Q Consensus 510 l~~~~~~~~~~~~p~~~H~~~--~~--~~~~~~~~~~~~fl~~~ 549 (550)
|++.|+++++..++++.|++. .+ .......+++.+|+.+.
T Consensus 292 Lkk~Gv~v~~~~~e~~~H~~~~~~~~~~~a~~~~~~i~~fi~~~ 335 (336)
T KOG1515|consen 292 LKKAGVEVTLIHYEDGFHGFHILDPSSKEAHALMDAIVEFIKSN 335 (336)
T ss_pred HHHcCCeEEEEEECCCeeEEEecCCchhhHHHHHHHHHHHHhhc
Confidence 999999999999999999862 22 36677888999998764
No 82
>PF12715 Abhydrolase_7: Abhydrolase family; PDB: 3NUZ_C 3G8Y_A.
Probab=99.68 E-value=8.5e-17 Score=150.31 Aligned_cols=220 Identities=20% Similarity=0.264 Sum_probs=116.1
Q ss_pred CCeEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCce-----------eecccccccchhHhHHHHhCCcEE
Q 008873 297 PPDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQ-----------LVCDSWINTVDMRAQYLRSKGILV 365 (550)
Q Consensus 297 ~~~~~~~~~~~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~-----------~~~~~~~~~~~~~~~~l~~~G~~v 365 (550)
..|.+.|....+..++++++.|++.+ ++.|+||.+||-.+.. .+.+.+...-..++..|+++||+|
T Consensus 87 ~~EKv~f~~~p~~~vpaylLvPd~~~---~p~PAVL~lHgHg~~Ke~~~g~~gv~~~~~~~~~~~~~~~g~~LAk~GYVv 163 (390)
T PF12715_consen 87 TREKVEFNTTPGSRVPAYLLVPDGAK---GPFPAVLCLHGHGGGKEKMAGEDGVSPDLKDDYDDPKQDYGDQLAKRGYVV 163 (390)
T ss_dssp EEEEEEE--STTB-EEEEEEEETT-----S-EEEEEEE--TT--HHHHCT---SSGCG--STTSTTT-HHHHHHTTTSEE
T ss_pred EEEEEEEEccCCeeEEEEEEecCCCC---CCCCEEEEeCCCCCCcccccCCcccccccchhhccccccHHHHHHhCCCEE
Confidence 45888898889999999999999853 7899999999932221 111112211223577899999999
Q ss_pred EEECCCCCCCCchhh---------HHHH---hhccCC----CchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHH
Q 008873 366 WKLDNRGTARRGLKF---------EASI---KHNCGR----IDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAIT 429 (550)
Q Consensus 366 v~~d~rG~g~~~~~~---------~~~~---~~~~~~----~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~ 429 (550)
+++|.+|.|..++.- ...+ ...+|. ...-|.+.+++||..++.||++||+++|+||||+.++++
T Consensus 164 la~D~~g~GER~~~e~~~~~~~~~~~~la~~~l~lG~S~~G~~~~ddmr~lDfL~slpeVD~~RIG~~GfSmGg~~a~~L 243 (390)
T PF12715_consen 164 LAPDALGFGERGDMEGAAQGSNYDCQALARNLLMLGRSLAGLMAWDDMRALDFLASLPEVDPDRIGCMGFSMGGYRAWWL 243 (390)
T ss_dssp EEE--TTSGGG-SSCCCTTTTS--HHHHHHHHHHTT--HHHHHHHHHHHHHHHHCT-TTEEEEEEEEEEEGGGHHHHHHH
T ss_pred EEEccccccccccccccccccchhHHHHHHHHHHcCcCHHHHHHHHHHHHHHHHhcCcccCccceEEEeecccHHHHHHH
Confidence 999999988765411 0111 111222 235567789999999999999999999999999999999
Q ss_pred HhhCCCeeEEEEEcCCcCCccc---ccchhhhhcc-CCCC----CCccccccCChhhhhhcCC--CcEEEEecCCCCCCC
Q 008873 430 LARFPDVFQCAVSGAPVTSWDG---YDTFYTEKYM-GLPS----EDPVGYEYSSVMHHVHKMK--GKLLLVHGMIDENVH 499 (550)
Q Consensus 430 ~~~~~~~~~~~v~~~~~~~~~~---~~~~~~~~~~-g~~~----~~~~~~~~~~~~~~~~~i~--~P~lii~G~~D~~v~ 499 (550)
++.. ++++++|+.+-+.-+.. .......+.. +.+. --+..++..+ ..++..+- .|+|++.|+.|..+|
T Consensus 244 aALD-dRIka~v~~~~l~~~~~~~~~mt~~~~~~~~~~~~~~~~~iPgl~r~~D-~PdIasliAPRPll~~nG~~Dklf~ 321 (390)
T PF12715_consen 244 AALD-DRIKATVANGYLCTTQERALLMTMPNNNGLRGFPNCICNYIPGLWRYFD-FPDIASLIAPRPLLFENGGKDKLFP 321 (390)
T ss_dssp HHH--TT--EEEEES-B--HHHHHHHB----TTS----SS-GGG--TTCCCC---HHHHHHTTTTS-EEESS-B-HHHHH
T ss_pred HHcc-hhhHhHhhhhhhhccchhhHhhccccccccCcCcchhhhhCccHHhhCc-cHHHHHHhCCCcchhhcCCcccccH
Confidence 9974 56677776553322110 0000000000 1111 0112222222 22333332 599999999998765
Q ss_pred hHHHHHHHHHHHHcCCCeEEEEcCC
Q 008873 500 FRHTARLINALVAARKPYEILIFPD 524 (550)
Q Consensus 500 ~~~~~~~~~~l~~~~~~~~~~~~p~ 524 (550)
. ....|+.. .+.-++++..||.
T Consensus 322 i--V~~AY~~~-~~p~n~~~~~~p~ 343 (390)
T PF12715_consen 322 I--VRRAYAIM-GAPDNFQIHHYPK 343 (390)
T ss_dssp H--HHHHHHHT-T-GGGEEE---GG
T ss_pred H--HHHHHHhc-CCCcceEEeeccc
Confidence 4 23333332 2234778888886
No 83
>TIGR03695 menH_SHCHC 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase. This protein catalyzes the formation of SHCHC, or (1 R,6 R)-2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate, by elmination of pyruvate from 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate (SEPHCHC). Note that SHCHC synthase activity previously was attributed to MenD, which in fact is SEPHCHC synthase.
Probab=99.67 E-value=2e-15 Score=141.20 Aligned_cols=197 Identities=15% Similarity=0.160 Sum_probs=124.0
Q ss_pred eEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCchhhHHHHhhccCCCchHHHHHH-HHHHHHcC
Q 008873 329 KTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTG-AEWLIKQG 407 (550)
Q Consensus 329 P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~~~~~~~~~~~~~~~~~D~~~~-~~~l~~~~ 407 (550)
|+||++||.+++.. .|......|+ +||.|+++|.||+|.+.... .......+++... +..+.++-
T Consensus 2 ~~vv~~hG~~~~~~-------~~~~~~~~L~-~~~~v~~~d~~g~G~s~~~~------~~~~~~~~~~~~~~~~~~~~~~ 67 (251)
T TIGR03695 2 PVLVFLHGFLGSGA-------DWQALIELLG-PHFRCLAIDLPGHGSSQSPD------EIERYDFEEAAQDILATLLDQL 67 (251)
T ss_pred CEEEEEcCCCCchh-------hHHHHHHHhc-ccCeEEEEcCCCCCCCCCCC------ccChhhHHHHHHHHHHHHHHHc
Confidence 67899999766543 2344567776 89999999999998775321 1111224444444 44444432
Q ss_pred CCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCcccccc---------------------hhhhhccC----
Q 008873 408 LAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDT---------------------FYTEKYMG---- 462 (550)
Q Consensus 408 ~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~~~~~---------------------~~~~~~~g---- 462 (550)
+.+++.++|||+||.+++.++.++|+.++++++.++...+..... .+...+..
T Consensus 68 --~~~~~~l~G~S~Gg~ia~~~a~~~~~~v~~lil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (251)
T TIGR03695 68 --GIEPFFLVGYSMGGRIALYYALQYPERVQGLILESGSPGLATEEERAARRQNDEQLAQRFEQEGLEAFLDDWYQQPLF 145 (251)
T ss_pred --CCCeEEEEEeccHHHHHHHHHHhCchheeeeEEecCCCCcCchHhhhhhhhcchhhhhHHHhcCccHHHHHHhcCcee
Confidence 457899999999999999999999999999998876543211000 00000000
Q ss_pred -----CCCCCcc----------------cc------ccCChhhhhhcCCCcEEEEecCCCCCCChHHHHHHHHHHHHcCC
Q 008873 463 -----LPSEDPV----------------GY------EYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARK 515 (550)
Q Consensus 463 -----~~~~~~~----------------~~------~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~ 515 (550)
.+..... .+ ...+....+.++++|+|+++|+.|..++ .. .+.+.+...
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~-~~----~~~~~~~~~ 220 (251)
T TIGR03695 146 ASQKNLPPEQRQALRAKRLANNPEGLAKMLRATGLGKQPSLWPKLQALTIPVLYLCGEKDEKFV-QI----AKEMQKLLP 220 (251)
T ss_pred eecccCChHHhHHHHHhcccccchHHHHHHHHhhhhcccchHHHhhCCCCceEEEeeCcchHHH-HH----HHHHHhcCC
Confidence 0000000 00 0012223456788999999999997653 22 233444445
Q ss_pred CeEEEEcCCCCCcCCCCCcHHHHHHHHHHHHH
Q 008873 516 PYEILIFPDERHMPRRHRDRIYMEERIWEFIE 547 (550)
Q Consensus 516 ~~~~~~~p~~~H~~~~~~~~~~~~~~~~~fl~ 547 (550)
+.++.++|+++|.+. .++...+.+.+.+||+
T Consensus 221 ~~~~~~~~~~gH~~~-~e~~~~~~~~i~~~l~ 251 (251)
T TIGR03695 221 NLTLVIIANAGHNIH-LENPEAFAKILLAFLE 251 (251)
T ss_pred CCcEEEEcCCCCCcC-ccChHHHHHHHHHHhC
Confidence 778999999999873 3556778888888873
No 84
>PLN02894 hydrolase, alpha/beta fold family protein
Probab=99.67 E-value=5.6e-15 Score=146.89 Aligned_cols=204 Identities=19% Similarity=0.175 Sum_probs=124.1
Q ss_pred CceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCchhhHHHHhhccCCCchH-HHHHHH-HHHH
Q 008873 327 PYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAE-DQLTGA-EWLI 404 (550)
Q Consensus 327 ~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~~~~~~~~~~~~~~~~~-D~~~~~-~~l~ 404 (550)
..|+||++||.+.... .| ......|++ +|.|+++|+||+|.+...... ... ..... .+.+.+ +++.
T Consensus 104 ~~p~vvllHG~~~~~~---~~----~~~~~~L~~-~~~vi~~D~rG~G~S~~~~~~--~~~--~~~~~~~~~~~i~~~~~ 171 (402)
T PLN02894 104 DAPTLVMVHGYGASQG---FF----FRNFDALAS-RFRVIAIDQLGWGGSSRPDFT--CKS--TEETEAWFIDSFEEWRK 171 (402)
T ss_pred CCCEEEEECCCCcchh---HH----HHHHHHHHh-CCEEEEECCCCCCCCCCCCcc--ccc--HHHHHHHHHHHHHHHHH
Confidence 4588999999765432 22 223455654 599999999999987542110 000 00011 122222 3333
Q ss_pred HcCCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCccccc----------c-h------------------
Q 008873 405 KQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYD----------T-F------------------ 455 (550)
Q Consensus 405 ~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~~~~----------~-~------------------ 455 (550)
.. +.+++.|+||||||++++.++.++|++++++|+.+|..-..... . +
T Consensus 172 ~l---~~~~~~lvGhS~GG~la~~~a~~~p~~v~~lvl~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 248 (402)
T PLN02894 172 AK---NLSNFILLGHSFGGYVAAKYALKHPEHVQHLILVGPAGFSSESDDKSEWLTKFRATWKGAVLNHLWESNFTPQKI 248 (402)
T ss_pred Hc---CCCCeEEEEECHHHHHHHHHHHhCchhhcEEEEECCccccCCcchhHHHHhhcchhHHHHHHHHHhhcCCCHHHH
Confidence 22 45689999999999999999999999999998887643110000 0 0
Q ss_pred --------------hhhhccC-------CCCCCcccc---------------------------ccCChhhhhhcCCCcE
Q 008873 456 --------------YTEKYMG-------LPSEDPVGY---------------------------EYSSVMHHVHKMKGKL 487 (550)
Q Consensus 456 --------------~~~~~~g-------~~~~~~~~~---------------------------~~~~~~~~~~~i~~P~ 487 (550)
+....+. ......+.+ ...+....+.++++|+
T Consensus 249 ~~~~gp~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~I~vP~ 328 (402)
T PLN02894 249 IRGLGPWGPNLVRRYTTARFGAHSTGDILSEEESKLLTDYVYHTLAAKASGELCLKYIFSFGAFARKPLLESASEWKVPT 328 (402)
T ss_pred HHhccchhHHHHHHHHHHHhhhcccccccCcchhhHHHHHHHHhhcCCCchHHHHHHhccCchhhcchHhhhcccCCCCE
Confidence 0000000 000000000 0112223467788999
Q ss_pred EEEecCCCCCCChHHHHHHHHHHHHcCCCeEEEEcCCCCCcCCCCCcHHHHHHHHHHHHHHhC
Q 008873 488 LLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIERTL 550 (550)
Q Consensus 488 lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p~~~H~~~~~~~~~~~~~~~~~fl~~~l 550 (550)
|+++|++|..++ ....++.+.+ +.+++++++|++||.. ..++...+.+.+.+|++.+|
T Consensus 329 liI~G~~D~i~~-~~~~~~~~~~---~~~~~~~~i~~aGH~~-~~E~P~~f~~~l~~~~~~~~ 386 (402)
T PLN02894 329 TFIYGRHDWMNY-EGAVEARKRM---KVPCEIIRVPQGGHFV-FLDNPSGFHSAVLYACRKYL 386 (402)
T ss_pred EEEEeCCCCCCc-HHHHHHHHHc---CCCCcEEEeCCCCCee-eccCHHHHHHHHHHHHHHhc
Confidence 999999998665 4454544433 4467899999999986 55677888999999988764
No 85
>PLN00021 chlorophyllase
Probab=99.67 E-value=6.5e-15 Score=139.93 Aligned_cols=181 Identities=17% Similarity=0.112 Sum_probs=122.1
Q ss_pred cEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCchhhHHHHhhcc
Q 008873 309 TVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNC 388 (550)
Q Consensus 309 ~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~~~~~~~~~~~ 388 (550)
..+++.++.|... +++|+||++||+..... .|....+.|+++||.|+++|++|.++...
T Consensus 37 ~~~p~~v~~P~~~----g~~PvVv~lHG~~~~~~-------~y~~l~~~Las~G~~VvapD~~g~~~~~~---------- 95 (313)
T PLN00021 37 PPKPLLVATPSEA----GTYPVLLFLHGYLLYNS-------FYSQLLQHIASHGFIVVAPQLYTLAGPDG---------- 95 (313)
T ss_pred CCceEEEEeCCCC----CCCCEEEEECCCCCCcc-------cHHHHHHHHHhCCCEEEEecCCCcCCCCc----------
Confidence 4688899999753 67899999999765422 24446788899999999999988542211
Q ss_pred CCCchHHHHHHHHHHHHc--------CCCCCCceEEEEechhHHHHHHHHhhCCC-----eeEEEEEcCCcCCcccccch
Q 008873 389 GRIDAEDQLTGAEWLIKQ--------GLAKVGHIGLYGWSYGGYLSAITLARFPD-----VFQCAVSGAPVTSWDGYDTF 455 (550)
Q Consensus 389 ~~~~~~D~~~~~~~l~~~--------~~~d~~~i~i~G~S~GG~~a~~~~~~~~~-----~~~~~v~~~~~~~~~~~~~~ 455 (550)
..+++|..++++|+.+. ..+|.++++|+|||+||++++.++..+++ .|++++...|+.......
T Consensus 96 -~~~i~d~~~~~~~l~~~l~~~l~~~~~~d~~~v~l~GHS~GG~iA~~lA~~~~~~~~~~~v~ali~ldPv~g~~~~~-- 172 (313)
T PLN00021 96 -TDEIKDAAAVINWLSSGLAAVLPEGVRPDLSKLALAGHSRGGKTAFALALGKAAVSLPLKFSALIGLDPVDGTSKGK-- 172 (313)
T ss_pred -hhhHHHHHHHHHHHHhhhhhhcccccccChhheEEEEECcchHHHHHHHhhccccccccceeeEEeecccccccccc--
Confidence 11245666667777642 23677899999999999999999988764 578889888875422100
Q ss_pred hhhhccCCCCCCccccccCChhhhhhcCCCcEEEEecCCCC-----CC----ChH-HHHHHHHHHHHcCCCeEEEEcCCC
Q 008873 456 YTEKYMGLPSEDPVGYEYSSVMHHVHKMKGKLLLVHGMIDE-----NV----HFR-HTARLINALVAARKPYEILIFPDE 525 (550)
Q Consensus 456 ~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~P~lii~G~~D~-----~v----~~~-~~~~~~~~l~~~~~~~~~~~~p~~ 525 (550)
...+..+. . ....-++..|+|++++..|. .+ |.. +..++++++ ..+..+++.+++
T Consensus 173 ---------~~~p~il~-~--~~~s~~~~~P~liig~g~~~~~~~~~~p~~ap~~~~~~~f~~~~---~~~~~~~~~~~~ 237 (313)
T PLN00021 173 ---------QTPPPVLT-Y--APHSFNLDIPVLVIGTGLGGEPRNPLFPPCAPDGVNHAEFFNEC---KAPAVHFVAKDY 237 (313)
T ss_pred ---------CCCCcccc-c--CcccccCCCCeEEEecCCCcccccccccccCCCCCCHHHHHHhc---CCCeeeeeecCC
Confidence 00011110 0 01222367899999998763 22 233 336777665 457888899999
Q ss_pred CCc
Q 008873 526 RHM 528 (550)
Q Consensus 526 ~H~ 528 (550)
+|.
T Consensus 238 gH~ 240 (313)
T PLN00021 238 GHM 240 (313)
T ss_pred Ccc
Confidence 996
No 86
>TIGR01738 bioH putative pimeloyl-BioC--CoA transferase BioH. This CoA-binding enzyme is required for the production of pimeloyl-coenzyme A, the substrate of the BioF protein early in the biosynthesis of biotin. Its exact function is unknown, but is proposed in ref 2. This enzyme belongs to the alpha/beta hydrolase fold family (pfam model pfam00561). Members of this family are restricted to the Proteobacteria.
Probab=99.67 E-value=1.7e-15 Score=141.34 Aligned_cols=190 Identities=17% Similarity=0.200 Sum_probs=123.1
Q ss_pred eEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCchhhHHHHhhccCCCchHHHHHHHHHHHHcCC
Q 008873 329 KTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGL 408 (550)
Q Consensus 329 P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~ 408 (550)
|.||++||.+.+.. .|......|+ .+|.|+++|+||+|.+... ....++++.+ .+.+..
T Consensus 5 ~~iv~~HG~~~~~~-------~~~~~~~~l~-~~~~vi~~d~~G~G~s~~~---------~~~~~~~~~~---~~~~~~- 63 (245)
T TIGR01738 5 VHLVLIHGWGMNAE-------VFRCLDEELS-AHFTLHLVDLPGHGRSRGF---------GPLSLADAAE---AIAAQA- 63 (245)
T ss_pred ceEEEEcCCCCchh-------hHHHHHHhhc-cCeEEEEecCCcCccCCCC---------CCcCHHHHHH---HHHHhC-
Confidence 67899999765533 2333455565 4799999999999976421 1122444433 333332
Q ss_pred CCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCcc---ccc----c-h-------h-------hhhc-----c
Q 008873 409 AKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWD---GYD----T-F-------Y-------TEKY-----M 461 (550)
Q Consensus 409 ~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~---~~~----~-~-------~-------~~~~-----~ 461 (550)
.+++.++||||||++++.++.++|++++++|+.++...+. .+. . . . .+.+ +
T Consensus 64 --~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (245)
T TIGR01738 64 --PDPAIWLGWSLGGLVALHIAATHPDRVRALVTVASSPCFSAREDWPEGIKPDVLTGFQQQLSDDYQRTIERFLALQTL 141 (245)
T ss_pred --CCCeEEEEEcHHHHHHHHHHHHCHHhhheeeEecCCcccccCCcccccCCHHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence 2689999999999999999999999999988876543211 000 0 0 0 0000 1
Q ss_pred CCCCCCc------------------------cccccCChhhhhhcCCCcEEEEecCCCCCCChHHHHHHHHHHHHcCCCe
Q 008873 462 GLPSEDP------------------------VGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPY 517 (550)
Q Consensus 462 g~~~~~~------------------------~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~ 517 (550)
+.+.... ..+...+....+.++++|+|+++|++|..+|++....+.+.+ .++
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~Pvlii~g~~D~~~~~~~~~~~~~~~----~~~ 217 (245)
T TIGR01738 142 GTPTARQDARALKQTLLARPTPNVQVLQAGLEILATVDLRQPLQNISVPFLRLYGYLDGLVPAKVVPYLDKLA----PHS 217 (245)
T ss_pred cCCccchHHHHHHHHhhccCCCCHHHHHHHHHHhhcccHHHHHhcCCCCEEEEeecCCcccCHHHHHHHHHhC----CCC
Confidence 1110000 000111222346788999999999999999988877766544 467
Q ss_pred EEEEcCCCCCcCCCCCcHHHHHHHHHHHH
Q 008873 518 EILIFPDERHMPRRHRDRIYMEERIWEFI 546 (550)
Q Consensus 518 ~~~~~p~~~H~~~~~~~~~~~~~~~~~fl 546 (550)
++.++|+++|.+. .++...+.+.+.+|+
T Consensus 218 ~~~~~~~~gH~~~-~e~p~~~~~~i~~fi 245 (245)
T TIGR01738 218 ELYIFAKAAHAPF-LSHAEAFCALLVAFK 245 (245)
T ss_pred eEEEeCCCCCCcc-ccCHHHHHHHHHhhC
Confidence 8999999999873 467788888888874
No 87
>PRK14875 acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional
Probab=99.67 E-value=3.9e-15 Score=148.37 Aligned_cols=196 Identities=17% Similarity=0.163 Sum_probs=127.2
Q ss_pred ceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCchhhHHHHhhccCCCchHHHHHHHHHHHHcC
Q 008873 328 YKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQG 407 (550)
Q Consensus 328 ~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~ 407 (550)
.|.||++||.++... .|......|.. +|.|+++|+||+|.+.... ......++.+.+..+.+.
T Consensus 131 ~~~vl~~HG~~~~~~-------~~~~~~~~l~~-~~~v~~~d~~g~G~s~~~~--------~~~~~~~~~~~~~~~~~~- 193 (371)
T PRK14875 131 GTPVVLIHGFGGDLN-------NWLFNHAALAA-GRPVIALDLPGHGASSKAV--------GAGSLDELAAAVLAFLDA- 193 (371)
T ss_pred CCeEEEECCCCCccc-------hHHHHHHHHhc-CCEEEEEcCCCCCCCCCCC--------CCCCHHHHHHHHHHHHHh-
Confidence 478889999766533 23334555554 5999999999999774321 122355666666655544
Q ss_pred CCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCcccccchhh----------------hhccCCCCC-----
Q 008873 408 LAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTFYT----------------EKYMGLPSE----- 466 (550)
Q Consensus 408 ~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~----------------~~~~g~~~~----- 466 (550)
++..++.|+|||+||++++.++..+|++++++++.+|..........+. ...+..+..
T Consensus 194 -~~~~~~~lvG~S~Gg~~a~~~a~~~~~~v~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (371)
T PRK14875 194 -LGIERAHLVGHSMGGAVALRLAARAPQRVASLTLIAPAGLGPEINGDYIDGFVAAESRRELKPVLELLFADPALVTRQM 272 (371)
T ss_pred -cCCccEEEEeechHHHHHHHHHHhCchheeEEEEECcCCcCcccchhHHHHhhcccchhHHHHHHHHHhcChhhCCHHH
Confidence 3557899999999999999999989999999998877532110000000 000000000
Q ss_pred -----------C-cc------------ccccCChhhhhhcCCCcEEEEecCCCCCCChHHHHHHHHHHHHcCCCeEEEEc
Q 008873 467 -----------D-PV------------GYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIF 522 (550)
Q Consensus 467 -----------~-~~------------~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~ 522 (550)
. .. .....+....+.++++|+|+++|++|..+|+.++..+. ..+++.++
T Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~Pvlii~g~~D~~vp~~~~~~l~-------~~~~~~~~ 345 (371)
T PRK14875 273 VEDLLKYKRLDGVDDALRALADALFAGGRQRVDLRDRLASLAIPVLVIWGEQDRIIPAAHAQGLP-------DGVAVHVL 345 (371)
T ss_pred HHHHHHHhccccHHHHHHHHHHHhccCcccchhHHHHHhcCCCCEEEEEECCCCccCHHHHhhcc-------CCCeEEEe
Confidence 0 00 00011223356778999999999999999987665432 35788999
Q ss_pred CCCCCcCCCCCcHHHHHHHHHHHHHHh
Q 008873 523 PDERHMPRRHRDRIYMEERIWEFIERT 549 (550)
Q Consensus 523 p~~~H~~~~~~~~~~~~~~~~~fl~~~ 549 (550)
|++||.+ ..++...+.+.+.+||+++
T Consensus 346 ~~~gH~~-~~e~p~~~~~~i~~fl~~~ 371 (371)
T PRK14875 346 PGAGHMP-QMEAAADVNRLLAEFLGKA 371 (371)
T ss_pred CCCCCCh-hhhCHHHHHHHHHHHhccC
Confidence 9999987 3456678888888998753
No 88
>PRK10349 carboxylesterase BioH; Provisional
Probab=99.66 E-value=2.1e-15 Score=141.93 Aligned_cols=191 Identities=17% Similarity=0.168 Sum_probs=123.5
Q ss_pred eEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCchhhHHHHhhccCCCchHHHHHHHHHHHHcCC
Q 008873 329 KTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGL 408 (550)
Q Consensus 329 P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~ 408 (550)
|.||++||.+.+.. .|......|.+ .|.|+++|+||+|.+... .....+++.+ .+.+.
T Consensus 14 ~~ivllHG~~~~~~-------~w~~~~~~L~~-~~~vi~~Dl~G~G~S~~~---------~~~~~~~~~~---~l~~~-- 71 (256)
T PRK10349 14 VHLVLLHGWGLNAE-------VWRCIDEELSS-HFTLHLVDLPGFGRSRGF---------GALSLADMAE---AVLQQ-- 71 (256)
T ss_pred CeEEEECCCCCChh-------HHHHHHHHHhc-CCEEEEecCCCCCCCCCC---------CCCCHHHHHH---HHHhc--
Confidence 56899999765543 23445666755 599999999999977421 1122444433 33332
Q ss_pred CCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCc------cccc-ch--------------hhhhcc-----C
Q 008873 409 AKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSW------DGYD-TF--------------YTEKYM-----G 462 (550)
Q Consensus 409 ~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~------~~~~-~~--------------~~~~~~-----g 462 (550)
..+++.++||||||++++.++.++|++++++|+.++.... .... .. ....++ +
T Consensus 72 -~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lili~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (256)
T PRK10349 72 -APDKAIWLGWSLGGLVASQIALTHPERVQALVTVASSPCFSARDEWPGIKPDVLAGFQQQLSDDFQRTVERFLALQTMG 150 (256)
T ss_pred -CCCCeEEEEECHHHHHHHHHHHhChHhhheEEEecCccceecCCCCCcccHHHHHHHHHHHHhchHHHHHHHHHHHHcc
Confidence 3468999999999999999999999999999887653211 1000 00 000000 0
Q ss_pred CCCCC-----------------c-------cccccCChhhhhhcCCCcEEEEecCCCCCCChHHHHHHHHHHHHcCCCeE
Q 008873 463 LPSED-----------------P-------VGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYE 518 (550)
Q Consensus 463 ~~~~~-----------------~-------~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~ 518 (550)
.+... . ..+...+....+.++++|+|+++|+.|..+|.+.+..+.+.+ .+.+
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~~~~~~~~~~~~~~i----~~~~ 226 (256)
T PRK10349 151 TETARQDARALKKTVLALPMPEVDVLNGGLEILKTVDLRQPLQNVSMPFLRLYGYLDGLVPRKVVPMLDKLW----PHSE 226 (256)
T ss_pred CchHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHhCccHHHHhhcCCCeEEEecCCCccCCHHHHHHHHHhC----CCCe
Confidence 00000 0 001112233456778999999999999999987766555443 5678
Q ss_pred EEEcCCCCCcCCCCCcHHHHHHHHHHHHH
Q 008873 519 ILIFPDERHMPRRHRDRIYMEERIWEFIE 547 (550)
Q Consensus 519 ~~~~p~~~H~~~~~~~~~~~~~~~~~fl~ 547 (550)
+.++|++||.+ ..++...+.+.+.+|-+
T Consensus 227 ~~~i~~~gH~~-~~e~p~~f~~~l~~~~~ 254 (256)
T PRK10349 227 SYIFAKAAHAP-FISHPAEFCHLLVALKQ 254 (256)
T ss_pred EEEeCCCCCCc-cccCHHHHHHHHHHHhc
Confidence 99999999987 44777888888887754
No 89
>PRK06489 hypothetical protein; Provisional
Probab=99.66 E-value=4.8e-15 Score=146.21 Aligned_cols=207 Identities=16% Similarity=0.221 Sum_probs=125.8
Q ss_pred ceEEEEEcCCCCceeeccccc-ccchhHhHHH-------HhCCcEEEEECCCCCCCCchhhHHHHhhccCCCchHHHHHH
Q 008873 328 YKTLISVYGGPCVQLVCDSWI-NTVDMRAQYL-------RSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTG 399 (550)
Q Consensus 328 ~P~vv~~hGg~~~~~~~~~~~-~~~~~~~~~l-------~~~G~~vv~~d~rG~g~~~~~~~~~~~~~~~~~~~~D~~~~ 399 (550)
.|.||++||.+++.. .|. .. +...| .+.+|.|+++|+||+|.+...... .........++++.+.
T Consensus 69 gpplvllHG~~~~~~---~~~~~~---~~~~l~~~~~~l~~~~~~Via~Dl~GhG~S~~p~~~-~~~~~~~~~~~~~a~~ 141 (360)
T PRK06489 69 DNAVLVLHGTGGSGK---SFLSPT---FAGELFGPGQPLDASKYFIILPDGIGHGKSSKPSDG-LRAAFPRYDYDDMVEA 141 (360)
T ss_pred CCeEEEeCCCCCchh---hhccch---hHHHhcCCCCcccccCCEEEEeCCCCCCCCCCCCcC-CCCCCCcccHHHHHHH
Confidence 477899999876532 221 11 12222 257899999999999977532100 0001112345566544
Q ss_pred HHH-HHHcCCCCCCceE-EEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCcc---c--ccc---------------hhh
Q 008873 400 AEW-LIKQGLAKVGHIG-LYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWD---G--YDT---------------FYT 457 (550)
Q Consensus 400 ~~~-l~~~~~~d~~~i~-i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~---~--~~~---------------~~~ 457 (550)
+.. +.++- +.+++. |+||||||++++.++.++|++++++|+.++..... . ... .+.
T Consensus 142 ~~~~l~~~l--gi~~~~~lvG~SmGG~vAl~~A~~~P~~V~~LVLi~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (360)
T PRK06489 142 QYRLVTEGL--GVKHLRLILGTSMGGMHAWMWGEKYPDFMDALMPMASQPTEMSGRNWMWRRMLIESIRNDPAWNNGNYT 219 (360)
T ss_pred HHHHHHHhc--CCCceeEEEEECHHHHHHHHHHHhCchhhheeeeeccCcccccHHHHHHHHHHHHHHHhCCCCCCCCCC
Confidence 333 33332 335664 89999999999999999999999999876542100 0 000 000
Q ss_pred --h--------h-----------cc-CCCC-C----------------Ccccc-------ccCChhhhhhcCCCcEEEEe
Q 008873 458 --E--------K-----------YM-GLPS-E----------------DPVGY-------EYSSVMHHVHKMKGKLLLVH 491 (550)
Q Consensus 458 --~--------~-----------~~-g~~~-~----------------~~~~~-------~~~~~~~~~~~i~~P~lii~ 491 (550)
. . +. ..+. . ....+ ...+....+.+|++|+|+|+
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~L~~I~~PvLvI~ 299 (360)
T PRK06489 220 TQPPSLKRANPMFAIATSGGTLAYQAQAPTRAAADKLVDERLAAPVTADANDFLYQWDSSRDYNPSPDLEKIKAPVLAIN 299 (360)
T ss_pred CCHHHHHHHHHHHHHHHhCCHHHHHHhcCChHHHHHHHHHHHHhhhhcCHHHHHHHHHHhhccChHHHHHhCCCCEEEEe
Confidence 0 0 00 0000 0 00000 01122334677899999999
Q ss_pred cCCCCCCChHHH--HHHHHHHHHcCCCeEEEEcCCC----CCcCCCCCcHHHHHHHHHHHHHHh
Q 008873 492 GMIDENVHFRHT--ARLINALVAARKPYEILIFPDE----RHMPRRHRDRIYMEERIWEFIERT 549 (550)
Q Consensus 492 G~~D~~v~~~~~--~~~~~~l~~~~~~~~~~~~p~~----~H~~~~~~~~~~~~~~~~~fl~~~ 549 (550)
|++|..+|+..+ ..+.+.+ .+.+++++|++ ||.+ . +....+.+.+.+||+++
T Consensus 300 G~~D~~~p~~~~~~~~la~~i----p~a~l~~i~~a~~~~GH~~-~-e~P~~~~~~i~~FL~~~ 357 (360)
T PRK06489 300 SADDERNPPETGVMEAALKRV----KHGRLVLIPASPETRGHGT-T-GSAKFWKAYLAEFLAQV 357 (360)
T ss_pred cCCCcccChhhHHHHHHHHhC----cCCeEEEECCCCCCCCccc-c-cCHHHHHHHHHHHHHhc
Confidence 999999998865 4554443 45789999996 9987 4 58889999999999764
No 90
>COG4099 Predicted peptidase [General function prediction only]
Probab=99.66 E-value=1.1e-15 Score=134.98 Aligned_cols=187 Identities=18% Similarity=0.124 Sum_probs=125.7
Q ss_pred EEEEEc-CCCcEEEEEEEcCCCCCCCCCCc-eEEEEEcCCCCceeeccc-ccccchhHhHHHHhCCcEEEEECCCCC-CC
Q 008873 300 IVQIQA-NDGTVLYGALYKPDESRYGPPPY-KTLISVYGGPCVQLVCDS-WINTVDMRAQYLRSKGILVWKLDNRGT-AR 375 (550)
Q Consensus 300 ~~~~~~-~~g~~l~~~~~~P~~~~~~~~~~-P~vv~~hGg~~~~~~~~~-~~~~~~~~~~~l~~~G~~vv~~d~rG~-g~ 375 (550)
.++|.. .-|.++.+.+|.|++..++ ++| |+++|+||++........ ........+...-+-++-|++|.|--- ..
T Consensus 162 a~~f~d~~tgneLkYrly~Pkdy~pd-kky~PLvlfLHgagq~g~dn~~~l~sg~gaiawa~pedqcfVlAPQy~~if~d 240 (387)
T COG4099 162 AVEFYDESTGNELKYRLYTPKDYAPD-KKYYPLVLFLHGAGQGGSDNDKVLSSGIGAIAWAGPEDQCFVLAPQYNPIFAD 240 (387)
T ss_pred heEeeccccCceeeEEEecccccCCC-CccccEEEEEecCCCCCchhhhhhhcCccceeeecccCceEEEcccccccccc
Confidence 344432 3578899999999887544 566 999999997654321100 000000001111123455666664320 00
Q ss_pred CchhhHHHHhhccCCCchHHHHHHHH-HHHHcCCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCcccccc
Q 008873 376 RGLKFEASIKHNCGRIDAEDQLTGAE-WLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDT 454 (550)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~D~~~~~~-~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 454 (550)
+. + --.......+.+++ -|..++.||.+||.++|.|+||++++.++.++|+.|+|++.++|--|.
T Consensus 241 ~e----~-----~t~~~l~~~idli~~vlas~ynID~sRIYviGlSrG~~gt~al~~kfPdfFAaa~~iaG~~d~----- 306 (387)
T COG4099 241 SE----E-----KTLLYLIEKIDLILEVLASTYNIDRSRIYVIGLSRGGFGTWALAEKFPDFFAAAVPIAGGGDR----- 306 (387)
T ss_pred cc----c-----ccchhHHHHHHHHHHHHhhccCcccceEEEEeecCcchhhHHHHHhCchhhheeeeecCCCch-----
Confidence 10 0 00111344555555 677788999999999999999999999999999999999999875331
Q ss_pred hhhhhccCCCCCCccccccCChhhhhhcCC-CcEEEEecCCCCCCChHHHHHHHHHHHHcCCCeEEEEcC
Q 008873 455 FYTEKYMGLPSEDPVGYEYSSVMHHVHKMK-GKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFP 523 (550)
Q Consensus 455 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~-~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p 523 (550)
..+++.++ .|+.++|+.+|..+|.+.+.-+++.|+..+.++.+..|.
T Consensus 307 ----------------------v~lv~~lk~~piWvfhs~dDkv~Pv~nSrv~y~~lk~~~~kv~Ytaf~ 354 (387)
T COG4099 307 ----------------------VYLVRTLKKAPIWVFHSSDDKVIPVSNSRVLYERLKALDRKVNYTAFL 354 (387)
T ss_pred ----------------------hhhhhhhccCceEEEEecCCCccccCcceeehHHHHhhccccchhhhh
Confidence 13344443 799999999999999999999999999988888887776
No 91
>PLN02578 hydrolase
Probab=99.65 E-value=5.3e-15 Score=145.43 Aligned_cols=195 Identities=14% Similarity=0.145 Sum_probs=123.0
Q ss_pred eEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCchhhHHHHhhccCCCchHHHHHHHHHHHHcCC
Q 008873 329 KTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGL 408 (550)
Q Consensus 329 P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~ 408 (550)
|.||++||.+.+.. .|......|+ .+|.|+++|+||+|.+...........+ .+|+.+.++.+.
T Consensus 87 ~~vvliHG~~~~~~-------~w~~~~~~l~-~~~~v~~~D~~G~G~S~~~~~~~~~~~~----a~~l~~~i~~~~---- 150 (354)
T PLN02578 87 LPIVLIHGFGASAF-------HWRYNIPELA-KKYKVYALDLLGFGWSDKALIEYDAMVW----RDQVADFVKEVV---- 150 (354)
T ss_pred CeEEEECCCCCCHH-------HHHHHHHHHh-cCCEEEEECCCCCCCCCCcccccCHHHH----HHHHHHHHHHhc----
Confidence 45788999665432 2333445554 4699999999999987654221111111 234444444432
Q ss_pred CCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCccc---------------ccc--------hhhh-------
Q 008873 409 AKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDG---------------YDT--------FYTE------- 458 (550)
Q Consensus 409 ~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~~---------------~~~--------~~~~------- 458 (550)
.+++.++|||+||++++.++.++|++++++++.++...+.. ... .+..
T Consensus 151 --~~~~~lvG~S~Gg~ia~~~A~~~p~~v~~lvLv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (354)
T PLN02578 151 --KEPAVLVGNSLGGFTALSTAVGYPELVAGVALLNSAGQFGSESREKEEAIVVEETVLTRFVVKPLKEWFQRVVLGFLF 228 (354)
T ss_pred --cCCeEEEEECHHHHHHHHHHHhChHhcceEEEECCCccccccccccccccccccchhhHHHhHHHHHHHHHHHHHHHH
Confidence 36799999999999999999999999999998765422110 000 0000
Q ss_pred ----------h----ccCCC--------------CCCc---cc-c----------ccCChhhhhhcCCCcEEEEecCCCC
Q 008873 459 ----------K----YMGLP--------------SEDP---VG-Y----------EYSSVMHHVHKMKGKLLLVHGMIDE 496 (550)
Q Consensus 459 ----------~----~~g~~--------------~~~~---~~-~----------~~~~~~~~~~~i~~P~lii~G~~D~ 496 (550)
. ....+ ..++ +. + ........+.++++|+|+++|+.|.
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~PvLiI~G~~D~ 308 (354)
T PLN02578 229 WQAKQPSRIESVLKSVYKDKSNVDDYLVESITEPAADPNAGEVYYRLMSRFLFNQSRYTLDSLLSKLSCPLLLLWGDLDP 308 (354)
T ss_pred HHhcCHHHHHHHHHHhcCCcccCCHHHHHHHHhcccCCchHHHHHHHHHHHhcCCCCCCHHHHhhcCCCCEEEEEeCCCC
Confidence 0 00000 0000 00 0 0111233467789999999999999
Q ss_pred CCChHHHHHHHHHHHHcCCCeEEEEcCCCCCcCCCCCcHHHHHHHHHHHHH
Q 008873 497 NVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIE 547 (550)
Q Consensus 497 ~v~~~~~~~~~~~l~~~~~~~~~~~~p~~~H~~~~~~~~~~~~~~~~~fl~ 547 (550)
.+|...+.++.+.+ .+.++.++ ++||.+ ..+...++.+.+.+|++
T Consensus 309 ~v~~~~~~~l~~~~----p~a~l~~i-~~GH~~-~~e~p~~~~~~I~~fl~ 353 (354)
T PLN02578 309 WVGPAKAEKIKAFY----PDTTLVNL-QAGHCP-HDEVPEQVNKALLEWLS 353 (354)
T ss_pred CCCHHHHHHHHHhC----CCCEEEEe-CCCCCc-cccCHHHHHHHHHHHHh
Confidence 99998887776654 34577777 589997 56788889999999985
No 92
>PRK03204 haloalkane dehalogenase; Provisional
Probab=99.65 E-value=1.6e-14 Score=137.76 Aligned_cols=196 Identities=15% Similarity=0.116 Sum_probs=123.7
Q ss_pred eEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCchhhHHHHhhccCCCchHHHHHHHHHHHHcCC
Q 008873 329 KTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGL 408 (550)
Q Consensus 329 P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~ 408 (550)
|.||++||.+.... .|......|. ++|.|+++|+||+|.+...-. .....+++.+.+..+.++-
T Consensus 35 ~~iv~lHG~~~~~~-------~~~~~~~~l~-~~~~vi~~D~~G~G~S~~~~~-------~~~~~~~~~~~~~~~~~~~- 98 (286)
T PRK03204 35 PPILLCHGNPTWSF-------LYRDIIVALR-DRFRCVAPDYLGFGLSERPSG-------FGYQIDEHARVIGEFVDHL- 98 (286)
T ss_pred CEEEEECCCCccHH-------HHHHHHHHHh-CCcEEEEECCCCCCCCCCCCc-------cccCHHHHHHHHHHHHHHh-
Confidence 67889999764321 2333455554 469999999999997753210 1123677777777776653
Q ss_pred CCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCcc-c-----cc---------------chhhhhccC-CC--
Q 008873 409 AKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWD-G-----YD---------------TFYTEKYMG-LP-- 464 (550)
Q Consensus 409 ~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~-~-----~~---------------~~~~~~~~g-~~-- 464 (550)
+.+++.++||||||.+++.++..+|++++++|+.++..-.. . +. ..+.++++. .+
T Consensus 99 -~~~~~~lvG~S~Gg~va~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (286)
T PRK03204 99 -GLDRYLSMGQDWGGPISMAVAVERADRVRGVVLGNTWFWPADTLAMKAFSRVMSSPPVQYAILRRNFFVERLIPAGTEH 177 (286)
T ss_pred -CCCCEEEEEECccHHHHHHHHHhChhheeEEEEECccccCCCchhHHHHHHHhccccchhhhhhhhHHHHHhccccccC
Confidence 44689999999999999999999999999999876543100 0 00 000011110 00
Q ss_pred CCC---ccccccC--------------------C-hhhh----hhc--CCCcEEEEecCCCCCCChHH-HHHHHHHHHHc
Q 008873 465 SED---PVGYEYS--------------------S-VMHH----VHK--MKGKLLLVHGMIDENVHFRH-TARLINALVAA 513 (550)
Q Consensus 465 ~~~---~~~~~~~--------------------~-~~~~----~~~--i~~P~lii~G~~D~~v~~~~-~~~~~~~l~~~ 513 (550)
... ...+... . .+.. ..+ +++|+|+++|++|..+++.. ...+.+.+
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~PtliI~G~~D~~~~~~~~~~~~~~~i--- 254 (286)
T PRK03204 178 RPSSAVMAHYRAVQPNAAARRGVAEMPKQILAARPLLARLAREVPATLGTKPTLLVWGMKDVAFRPKTILPRLRATF--- 254 (286)
T ss_pred CCCHHHHHHhcCCCCCHHHHHHHHHHHHhcchhhHHHHHhhhhhhhhcCCCCeEEEecCCCcccCcHHHHHHHHHhc---
Confidence 000 0001000 0 0001 111 17999999999999886554 44444433
Q ss_pred CCCeEEEEcCCCCCcCCCCCcHHHHHHHHHHHH
Q 008873 514 RKPYEILIFPDERHMPRRHRDRIYMEERIWEFI 546 (550)
Q Consensus 514 ~~~~~~~~~p~~~H~~~~~~~~~~~~~~~~~fl 546 (550)
...++.++|++||.+ ..+..+.+.+.+.+||
T Consensus 255 -p~~~~~~i~~aGH~~-~~e~Pe~~~~~i~~~~ 285 (286)
T PRK03204 255 -PDHVLVELPNAKHFI-QEDAPDRIAAAIIERF 285 (286)
T ss_pred -CCCeEEEcCCCcccc-cccCHHHHHHHHHHhc
Confidence 457899999999997 5578888899999987
No 93
>TIGR01836 PHA_synth_III_C poly(R)-hydroxyalkanoic acid synthase, class III, PhaC subunit. This model represents the PhaC subunit of a heterodimeric form of polyhydroxyalkanoic acid (PHA) synthase. Excepting the PhaC of Bacillus megaterium (which needs PhaR), all members require PhaE (TIGR01834) for activity and are designated class III. This enzyme builds ester polymers for carbon and energy storage that accumulate in inclusions, and both this enzyme and the depolymerase associate with the inclusions. Class III enzymes polymerize short-chain-length hydroxyalkanoates.
Probab=99.64 E-value=1.4e-14 Score=142.29 Aligned_cols=223 Identities=16% Similarity=0.151 Sum_probs=139.8
Q ss_pred EEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCchhhHHHHhhccCC
Q 008873 311 LYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGR 390 (550)
Q Consensus 311 l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~~~~~~~~~~~~~ 390 (550)
+..+.|.|.... ..+.| |+++||-.......+. ..+..++++|+++||.|+++|+||.|.+...+ .+..
T Consensus 48 ~~l~~~~~~~~~--~~~~p-vl~v~~~~~~~~~~d~--~~~~~~~~~L~~~G~~V~~~D~~g~g~s~~~~------~~~d 116 (350)
T TIGR01836 48 VVLYRYTPVKDN--THKTP-LLIVYALVNRPYMLDL--QEDRSLVRGLLERGQDVYLIDWGYPDRADRYL------TLDD 116 (350)
T ss_pred EEEEEecCCCCc--CCCCc-EEEeccccccceeccC--CCCchHHHHHHHCCCeEEEEeCCCCCHHHhcC------CHHH
Confidence 445556665421 12345 6778884322221111 12344688999999999999999876432211 1111
Q ss_pred CchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCcccccc----------------
Q 008873 391 IDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDT---------------- 454 (550)
Q Consensus 391 ~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~~~~~---------------- 454 (550)
....|+.++++++.++. ..+++.++||||||.+++.++..+|++++++++.++..+......
T Consensus 117 ~~~~~~~~~v~~l~~~~--~~~~i~lvGhS~GG~i~~~~~~~~~~~v~~lv~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 194 (350)
T TIGR01836 117 YINGYIDKCVDYICRTS--KLDQISLLGICQGGTFSLCYAALYPDKIKNLVTMVTPVDFETPGNMLSNWARHVDIDLAVD 194 (350)
T ss_pred HHHHHHHHHHHHHHHHh--CCCcccEEEECHHHHHHHHHHHhCchheeeEEEeccccccCCCCchhhhhccccCHHHHHH
Confidence 11245778889988764 346899999999999999999989999999999888766421100
Q ss_pred -------hhhh-hcc-CCCC--------------CCcc---cc-------c-------------------cCC-------
Q 008873 455 -------FYTE-KYM-GLPS--------------EDPV---GY-------E-------------------YSS------- 475 (550)
Q Consensus 455 -------~~~~-~~~-g~~~--------------~~~~---~~-------~-------------------~~~------- 475 (550)
.... .+. -.|. .+.+ .| . .+.
T Consensus 195 ~~~~~p~~~~~~~f~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~d~~~~~~~~~~~~~~~~~~~n~l~~g~~~ 274 (350)
T TIGR01836 195 TMGNIPGELLNLTFLMLKPFSLGYQKYVNLVDILEDERKVENFLRMEKWIFDSPDQAGEAFRQFVKDFYQQNGLINGEVE 274 (350)
T ss_pred hcCCCCHHHHHHHHHhcCcchhhhHHHHHHHHhcCChHHHHHHHHHHHHhcCCcCccHHHHHHHHHHHHhcCcccCCeeE
Confidence 0000 000 0000 0000 00 0 000
Q ss_pred ---hhhhhhcCCCcEEEEecCCCCCCChHHHHHHHHHHHHcCCCeEEEEcCCCCCcC--CCCCcHHHHHHHHHHHHHHh
Q 008873 476 ---VMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMP--RRHRDRIYMEERIWEFIERT 549 (550)
Q Consensus 476 ---~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p~~~H~~--~~~~~~~~~~~~~~~fl~~~ 549 (550)
....+.++++|+|+++|++|..+|++.+..+++.+. +.+.++.++++ +|.. ...+....+++.+.+||.++
T Consensus 275 ~~~~~~~l~~i~~Pvliv~G~~D~i~~~~~~~~~~~~~~--~~~~~~~~~~~-gH~~~~~~~~~~~~v~~~i~~wl~~~ 350 (350)
T TIGR01836 275 IGGRKVDLKNIKMPILNIYAERDHLVPPDASKALNDLVS--SEDYTELSFPG-GHIGIYVSGKAQKEVPPAIGKWLQAR 350 (350)
T ss_pred ECCEEccHHhCCCCeEEEecCCCCcCCHHHHHHHHHHcC--CCCeEEEEcCC-CCEEEEECchhHhhhhHHHHHHHHhC
Confidence 011355678999999999999999999988888763 34678888885 6653 33445688999999999864
No 94
>PRK11071 esterase YqiA; Provisional
Probab=99.64 E-value=2.1e-15 Score=133.41 Aligned_cols=174 Identities=18% Similarity=0.126 Sum_probs=110.2
Q ss_pred eEEEEEcCCCCceeecccccccchhHhHHHHh--CCcEEEEECCCCCCCCchhhHHHHhhccCCCchHHHHHHHHHHHHc
Q 008873 329 KTLISVYGGPCVQLVCDSWINTVDMRAQYLRS--KGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQ 406 (550)
Q Consensus 329 P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~--~G~~vv~~d~rG~g~~~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~ 406 (550)
|.||++||.+++.. .|.. ..+..++.+ .+|.|+++|.+|.+ ++..+.+..+.++
T Consensus 2 p~illlHGf~ss~~---~~~~--~~~~~~l~~~~~~~~v~~~dl~g~~-------------------~~~~~~l~~l~~~ 57 (190)
T PRK11071 2 STLLYLHGFNSSPR---SAKA--TLLKNWLAQHHPDIEMIVPQLPPYP-------------------ADAAELLESLVLE 57 (190)
T ss_pred CeEEEECCCCCCcc---hHHH--HHHHHHHHHhCCCCeEEeCCCCCCH-------------------HHHHHHHHHHHHH
Confidence 67999999766543 2221 123455555 37999999999763 1233344444443
Q ss_pred CCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCcccccchhhhhccCCCCC--Ccccc----------ccC
Q 008873 407 GLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTFYTEKYMGLPSE--DPVGY----------EYS 474 (550)
Q Consensus 407 ~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~~~~--~~~~~----------~~~ 474 (550)
. +.+++.++|+|+||++++.++.++|. + +|+.+|..+.. .. ...+++.... ..+.+ ...
T Consensus 58 ~--~~~~~~lvG~S~Gg~~a~~~a~~~~~--~-~vl~~~~~~~~--~~--~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 128 (190)
T PRK11071 58 H--GGDPLGLVGSSLGGYYATWLSQCFML--P-AVVVNPAVRPF--EL--LTDYLGENENPYTGQQYVLESRHIYDLKVM 128 (190)
T ss_pred c--CCCCeEEEEECHHHHHHHHHHHHcCC--C-EEEECCCCCHH--HH--HHHhcCCcccccCCCcEEEcHHHHHHHHhc
Confidence 2 34689999999999999999999884 3 46667665521 00 0011111000 00001 111
Q ss_pred ChhhhhhcCCCcEEEEecCCCCCCChHHHHHHHHHHHHcCCCeEEEEcCCCCCcCCCCCcHHHHHHHHHHHHH
Q 008873 475 SVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIE 547 (550)
Q Consensus 475 ~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p~~~H~~~~~~~~~~~~~~~~~fl~ 547 (550)
.+. .+. ..+|++++||++|+.||++.+.+++++. .+.++++++|.+.. .+...+.+.+||.
T Consensus 129 ~~~-~i~-~~~~v~iihg~~De~V~~~~a~~~~~~~-------~~~~~~ggdH~f~~---~~~~~~~i~~fl~ 189 (190)
T PRK11071 129 QID-PLE-SPDLIWLLQQTGDEVLDYRQAVAYYAAC-------RQTVEEGGNHAFVG---FERYFNQIVDFLG 189 (190)
T ss_pred CCc-cCC-ChhhEEEEEeCCCCcCCHHHHHHHHHhc-------ceEEECCCCcchhh---HHHhHHHHHHHhc
Confidence 111 122 4578899999999999999999999843 45677999999944 3778889999975
No 95
>PF07859 Abhydrolase_3: alpha/beta hydrolase fold A web page of Esterases and alpha/beta hydrolases.; InterPro: IPR013094 The alpha/beta hydrolase fold [] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices []. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. Esterase (EST) from Pseudomonas putida is a member of the alpha/beta hydrolase fold superfamily of enzymes []. In most of the family members the beta-strands are parallels, but some have an inversion of the first strands, which gives it an antiparallel orientation. The catalytic triad residues are presented on loops. One of these is the nucleophile elbow and is the most conserved feature of the fold. Some other members lack one or all of the catalytic residues. Some members are therefore inactive but others are involved in surface recognition. The ESTHER database [] gathers and annotates all the published information related to gene and protein sequences of this superfamily []. This entry represents the catalytic domain fold-3 of alpha/beta hydrolase. ; GO: 0016787 hydrolase activity, 0008152 metabolic process; PDB: 3D7R_B 2C7B_B 3ZWQ_B 2YH2_B 3BXP_A 3D3N_A 1LZK_A 1LZL_A 2O7V_A 2O7R_A ....
Probab=99.64 E-value=5.3e-16 Score=141.30 Aligned_cols=178 Identities=24% Similarity=0.206 Sum_probs=119.4
Q ss_pred EEEEcCCCCceeecccccccchhHhHHHH-hCCcEEEEECCCCCCCCchhhHHHHhhccCCCchHHHHHHHHHHHHc---
Q 008873 331 LISVYGGPCVQLVCDSWINTVDMRAQYLR-SKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQ--- 406 (550)
Q Consensus 331 vv~~hGg~~~~~~~~~~~~~~~~~~~~l~-~~G~~vv~~d~rG~g~~~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~--- 406 (550)
||++|||.......+. ...+...++ +.|+.|+.+|||-..... + ...++|+.++++|+.++
T Consensus 1 v~~~HGGg~~~g~~~~----~~~~~~~la~~~g~~v~~~~Yrl~p~~~--~---------p~~~~D~~~a~~~l~~~~~~ 65 (211)
T PF07859_consen 1 VVYIHGGGWVMGSKES----HWPFAARLAAERGFVVVSIDYRLAPEAP--F---------PAALEDVKAAYRWLLKNADK 65 (211)
T ss_dssp EEEE--STTTSCGTTT----HHHHHHHHHHHHTSEEEEEE---TTTSS--T---------THHHHHHHHHHHHHHHTHHH
T ss_pred CEEECCcccccCChHH----HHHHHHHHHhhccEEEEEeecccccccc--c---------cccccccccceeeecccccc
Confidence 6899999776432211 122355555 499999999999765321 1 12389999999999987
Q ss_pred CCCCCCceEEEEechhHHHHHHHHhhCC----CeeEEEEEcCCcCCc-ccccchh--------------------hhhcc
Q 008873 407 GLAKVGHIGLYGWSYGGYLSAITLARFP----DVFQCAVSGAPVTSW-DGYDTFY--------------------TEKYM 461 (550)
Q Consensus 407 ~~~d~~~i~i~G~S~GG~~a~~~~~~~~----~~~~~~v~~~~~~~~-~~~~~~~--------------------~~~~~ 461 (550)
..+|+++|+|+|+|.||.+++.++.... ..++++++.+|..|+ ......+ .+.++
T Consensus 66 ~~~d~~~i~l~G~SAGg~la~~~~~~~~~~~~~~~~~~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (211)
T PF07859_consen 66 LGIDPERIVLIGDSAGGHLALSLALRARDRGLPKPKGIILISPWTDLQDFDGPSYDDSNENKDDPFLPAPKIDWFWKLYL 145 (211)
T ss_dssp HTEEEEEEEEEEETHHHHHHHHHHHHHHHTTTCHESEEEEESCHSSTSTSSCHHHHHHHHHSTTSSSBHHHHHHHHHHHH
T ss_pred ccccccceEEeecccccchhhhhhhhhhhhcccchhhhhcccccccchhccccccccccccccccccccccccccccccc
Confidence 3479999999999999999999987432 248999999999877 2211111 00111
Q ss_pred CCCCCCccccccCChhhhhhcCC--CcEEEEecCCCCCCChHHHHHHHHHHHHcCCCeEEEEcCCCCCcC
Q 008873 462 GLPSEDPVGYEYSSVMHHVHKMK--GKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMP 529 (550)
Q Consensus 462 g~~~~~~~~~~~~~~~~~~~~i~--~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p~~~H~~ 529 (550)
+ .........+|+.. ..++ .|++|++|+.|..+ .++..++++|++.|++++++++++..|.|
T Consensus 146 ~---~~~~~~~~~sp~~~-~~~~~~Pp~~i~~g~~D~l~--~~~~~~~~~L~~~gv~v~~~~~~g~~H~f 209 (211)
T PF07859_consen 146 P---GSDRDDPLASPLNA-SDLKGLPPTLIIHGEDDVLV--DDSLRFAEKLKKAGVDVELHVYPGMPHGF 209 (211)
T ss_dssp S---TGGTTSTTTSGGGS-SCCTTCHEEEEEEETTSTTH--HHHHHHHHHHHHTT-EEEEEEETTEETTG
T ss_pred c---cccccccccccccc-cccccCCCeeeeccccccch--HHHHHHHHHHHHCCCCEEEEEECCCeEEe
Confidence 1 11111223445444 2333 59999999999764 68899999999999999999999999987
No 96
>PRK07581 hypothetical protein; Validated
Probab=99.64 E-value=4e-15 Score=145.93 Aligned_cols=229 Identities=10% Similarity=0.049 Sum_probs=133.8
Q ss_pred CCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCchhhHH---H
Q 008873 307 DGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEA---S 383 (550)
Q Consensus 307 ~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~~~~~---~ 383 (550)
+|..+++..+-+... .+.|+||++||+++... .|.... .....|...+|.|+++|.||+|.+...... .
T Consensus 24 ~~~~l~y~~~G~~~~----~~~~~vll~~~~~~~~~---~~~~~~-~~~~~l~~~~~~vi~~D~~G~G~S~~~~~~~~~~ 95 (339)
T PRK07581 24 PDARLAYKTYGTLNA----AKDNAILYPTWYSGTHQ---DNEWLI-GPGRALDPEKYFIIIPNMFGNGLSSSPSNTPAPF 95 (339)
T ss_pred CCceEEEEecCccCC----CCCCEEEEeCCCCCCcc---cchhhc-cCCCccCcCceEEEEecCCCCCCCCCCCCCCCCC
Confidence 455666555543211 23477787787654432 121000 001345567899999999999987532210 0
Q ss_pred HhhccCCCch-HHHHHHHHHHHHcCCCCCCce-EEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCcc-----------
Q 008873 384 IKHNCGRIDA-EDQLTGAEWLIKQGLAKVGHI-GLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWD----------- 450 (550)
Q Consensus 384 ~~~~~~~~~~-~D~~~~~~~l~~~~~~d~~~i-~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~----------- 450 (550)
....+....+ +|+.+....+.+.- ..+++ .|+||||||++++.++.++|++++.+|+.++.....
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~l~~~l--gi~~~~~lvG~S~GG~va~~~a~~~P~~V~~Lvli~~~~~~~~~~~~~~~~~~ 173 (339)
T PRK07581 96 NAARFPHVTIYDNVRAQHRLLTEKF--GIERLALVVGWSMGAQQTYHWAVRYPDMVERAAPIAGTAKTTPHNFVFLEGLK 173 (339)
T ss_pred CCCCCCceeHHHHHHHHHHHHHHHh--CCCceEEEEEeCHHHHHHHHHHHHCHHHHhhheeeecCCCCCHHHHHHHHHHH
Confidence 0011111123 33333333344432 34674 789999999999999999999999988875432100
Q ss_pred -------c-----cc-----------c-h----hhhhccCC------C-----------------CCCcccc-------c
Q 008873 451 -------G-----YD-----------T-F----YTEKYMGL------P-----------------SEDPVGY-------E 472 (550)
Q Consensus 451 -------~-----~~-----------~-~----~~~~~~g~------~-----------------~~~~~~~-------~ 472 (550)
. +. . . +...++.. . ..++..+ .
T Consensus 174 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 253 (339)
T PRK07581 174 AALTADPAFNGGWYAEPPERGLRAHARVYAGWGFSQAFYRQELWRAMGYASLEDFLVGFWEGNFLPRDPNNLLAMLWTWQ 253 (339)
T ss_pred HHHHhCCCCCCCCCCCcHHHHHHHHHHHHHHHHhHHHHHHhhhccccChhhHHHHHHHHHHHhhcccCcccHHHHHHHhh
Confidence 0 00 0 0 00000000 0 0000000 0
Q ss_pred ------c----CChhhhhhcCCCcEEEEecCCCCCCChHHHHHHHHHHHHcCCCeEEEEcCC-CCCcCCCCCcHHHHHHH
Q 008873 473 ------Y----SSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPD-ERHMPRRHRDRIYMEER 541 (550)
Q Consensus 473 ------~----~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p~-~~H~~~~~~~~~~~~~~ 541 (550)
. .+....+.++++|+|+++|+.|..+|+..+..+.+.+ ...++.++++ +||.. ..+....+...
T Consensus 254 ~~~~~~~~~~~~d~~~~L~~I~~PtLvI~G~~D~~~p~~~~~~l~~~i----p~a~l~~i~~~~GH~~-~~~~~~~~~~~ 328 (339)
T PRK07581 254 RGDISRNPAYGGDLAAALGSITAKTFVMPISTDLYFPPEDCEAEAALI----PNAELRPIESIWGHLA-GFGQNPADIAF 328 (339)
T ss_pred hcccccCcccCCCHHHHHhcCCCCEEEEEeCCCCCCCHHHHHHHHHhC----CCCeEEEeCCCCCccc-cccCcHHHHHH
Confidence 0 1223456678999999999999999999887776654 3468899998 89977 44666778899
Q ss_pred HHHHHHHhC
Q 008873 542 IWEFIERTL 550 (550)
Q Consensus 542 ~~~fl~~~l 550 (550)
+.+||++.|
T Consensus 329 ~~~~~~~~~ 337 (339)
T PRK07581 329 IDAALKELL 337 (339)
T ss_pred HHHHHHHHH
Confidence 999998864
No 97
>TIGR01392 homoserO_Ac_trn homoserine O-acetyltransferase. This family describes homoserine-O-acetyltransferase, an enzyme of methionine biosynthesis. This model has been rebuilt to identify sequences more broadly, including a number of sequences suggested to be homoserine O-acetyltransferase based on proximity to other Met biosynthesis genes.
Probab=99.64 E-value=8e-15 Score=144.20 Aligned_cols=234 Identities=15% Similarity=0.092 Sum_probs=140.4
Q ss_pred CCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecc--c-c-cccchhHh---HHHHhCCcEEEEECCCC--CCCCc
Q 008873 307 DGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCD--S-W-INTVDMRA---QYLRSKGILVWKLDNRG--TARRG 377 (550)
Q Consensus 307 ~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~--~-~-~~~~~~~~---~~l~~~G~~vv~~d~rG--~g~~~ 377 (550)
+|..|.+..+-+.+. ...|.||++||-+++..... . . ...|.... ..|...+|.|+++|+|| +|.++
T Consensus 14 ~~~~~~y~~~g~~~~----~~~~~vll~Hg~~~~~~~~~~~~~~~~~~w~~~~~~~~~l~~~~~~vi~~D~~G~~~g~s~ 89 (351)
T TIGR01392 14 SDVRVAYETYGTLNA----ERSNAVLVCHALTGDAHVAGYHDDGDPGWWDDLIGPGRAIDTDRYFVVCSNVLGGCYGSTG 89 (351)
T ss_pred CCceEEEEeccccCC----CCCCEEEEcCCcCcchhhcccCCCCCCCchhhccCCCCCcCCCceEEEEecCCCCCCCCCC
Confidence 566787777765322 12368899999666432100 0 0 00122221 24557899999999999 44333
Q ss_pred hh-hHHH---HhhccCCCchHHHHHHHHHHHHcCCCCCCc-eEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCcccc
Q 008873 378 LK-FEAS---IKHNCGRIDAEDQLTGAEWLIKQGLAKVGH-IGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGY 452 (550)
Q Consensus 378 ~~-~~~~---~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~-i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~~~ 452 (550)
.. .... ...+.....++|+.+.+..+.++- ..++ +.|+||||||.+++.++.++|++++++|+.++.......
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~~~~~~l~G~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~ 167 (351)
T TIGR01392 90 PSSINPGGRPYGSDFPLITIRDDVKAQKLLLDHL--GIEQIAAVVGGSMGGMQALEWAIDYPERVRAIVVLATSARHSAW 167 (351)
T ss_pred CCCCCCCCCcCCCCCCCCcHHHHHHHHHHHHHHc--CCCCceEEEEECHHHHHHHHHHHHChHhhheEEEEccCCcCCHH
Confidence 21 0000 000112345677777766666543 3356 999999999999999999999999999988765321100
Q ss_pred c--------ch---------------------h-----------------hhhccCCC-CC-----------Ccccc---
Q 008873 453 D--------TF---------------------Y-----------------TEKYMGLP-SE-----------DPVGY--- 471 (550)
Q Consensus 453 ~--------~~---------------------~-----------------~~~~~g~~-~~-----------~~~~~--- 471 (550)
. .. + ...+.... .. ..+.+
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (351)
T TIGR01392 168 CIAFNEVQRQAILADPNWNDGDYYEDGQPDRGLALARMLAHLTYRSEESMAERFGRAPQSGESPASGFDTRFQVESYLRY 247 (351)
T ss_pred HHHHHHHHHHHHHhCCCCCCCCCCCCCChhhHHHHHHHHHHHhcCCHHHHHHHhCcCcccccccccccCccchHHHHHHH
Confidence 0 00 0 00000000 00 00001
Q ss_pred ---------------------ccCC-------hhhhhhcCCCcEEEEecCCCCCCChHHHHHHHHHHHHcCCCeEEEE-c
Q 008873 472 ---------------------EYSS-------VMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILI-F 522 (550)
Q Consensus 472 ---------------------~~~~-------~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~-~ 522 (550)
...+ ....+++|++|+|+|+|++|..+|+..+.++.+.+......++++. +
T Consensus 248 ~~~~~~~~~d~~~~~~~~~~l~~~d~~~~~~~~~~~l~~I~~P~Lvi~G~~D~~~p~~~~~~~a~~i~~~~~~v~~~~i~ 327 (351)
T TIGR01392 248 QGDKFVDRFDANSYLYLTRALDTHDLGRGRGSLTEALSRIKAPFLVVSITSDWLFPPAESRELAKALPAAGLRVTYVEIE 327 (351)
T ss_pred HHHHHHhhcCcchHHHHHHHHHhcCCcCCCCCHHHHHhhCCCCEEEEEeCCccccCHHHHHHHHHHHhhcCCceEEEEeC
Confidence 0000 1245667889999999999999999999999888865444444444 5
Q ss_pred CCCCCcCCCCCcHHHHHHHHHHHHH
Q 008873 523 PDERHMPRRHRDRIYMEERIWEFIE 547 (550)
Q Consensus 523 p~~~H~~~~~~~~~~~~~~~~~fl~ 547 (550)
+++||.. ..+....+.+.+.+||+
T Consensus 328 ~~~GH~~-~le~p~~~~~~l~~FL~ 351 (351)
T TIGR01392 328 SPYGHDA-FLVETDQVEELIRGFLR 351 (351)
T ss_pred CCCCcch-hhcCHHHHHHHHHHHhC
Confidence 7899987 44677888888999874
No 98
>KOG1838 consensus Alpha/beta hydrolase [General function prediction only]
Probab=99.64 E-value=2e-14 Score=135.96 Aligned_cols=241 Identities=17% Similarity=0.093 Sum_probs=157.5
Q ss_pred CCCCCCeEEEEEcCCCcEEEEEEEcCCCCCC--CCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECC
Q 008873 293 LQLEPPDIVQIQANDGTVLYGALYKPDESRY--GPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDN 370 (550)
Q Consensus 293 ~~~~~~~~~~~~~~~g~~l~~~~~~P~~~~~--~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~ 370 (550)
......++.-++.+||-.+...+..+..... .....|+||++||-.++.. +. ....++..+.++||.||.+|.
T Consensus 88 ~p~~~y~Reii~~~DGG~~~lDW~~~~~~~~~~~~~~~P~vvilpGltg~S~--~~---YVr~lv~~a~~~G~r~VVfN~ 162 (409)
T KOG1838|consen 88 KPPVEYTREIIKTSDGGTVTLDWVENPDSRCRTDDGTDPIVVILPGLTGGSH--ES---YVRHLVHEAQRKGYRVVVFNH 162 (409)
T ss_pred CCCCcceeEEEEeCCCCEEEEeeccCcccccCCCCCCCcEEEEecCCCCCCh--hH---HHHHHHHHHHhCCcEEEEECC
Confidence 3445667788888899888888776654321 1245699999999655543 11 123345666789999999999
Q ss_pred CCCCCCchhhHHHHhhccCCCchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhC---CCeeEEEEEcCCcC
Q 008873 371 RGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARF---PDVFQCAVSGAPVT 447 (550)
Q Consensus 371 rG~g~~~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~---~~~~~~~v~~~~~~ 447 (550)
||.+++...-.. -+-....+|+.++++++.++. -..++..+|.||||.+.+..+++. +.+.+|++..+|.-
T Consensus 163 RG~~g~~LtTpr----~f~ag~t~Dl~~~v~~i~~~~--P~a~l~avG~S~Gg~iL~nYLGE~g~~~~l~~a~~v~~Pwd 236 (409)
T KOG1838|consen 163 RGLGGSKLTTPR----LFTAGWTEDLREVVNHIKKRY--PQAPLFAVGFSMGGNILTNYLGEEGDNTPLIAAVAVCNPWD 236 (409)
T ss_pred CCCCCCccCCCc----eeecCCHHHHHHHHHHHHHhC--CCCceEEEEecchHHHHHHHhhhccCCCCceeEEEEeccch
Confidence 998776432111 111223799999999999874 235899999999999999998864 33555555555542
Q ss_pred Cc--------c----cccc--------------------------------------hhhhhccCCCCCCccccccCChh
Q 008873 448 SW--------D----GYDT--------------------------------------FYTEKYMGLPSEDPVGYEYSSVM 477 (550)
Q Consensus 448 ~~--------~----~~~~--------------------------------------~~~~~~~g~~~~~~~~~~~~~~~ 477 (550)
-. . .|.. .++...+|.+. ..+.|++.|+.
T Consensus 237 ~~~~~~~~~~~~~~~~y~~~l~~~l~~~~~~~r~~~~~~~vd~d~~~~~~SvreFD~~~t~~~~gf~~-~deYY~~aSs~ 315 (409)
T KOG1838|consen 237 LLAASRSIETPLYRRFYNRALTLNLKRIVLRHRHTLFEDPVDFDVILKSRSVREFDEALTRPMFGFKS-VDEYYKKASSS 315 (409)
T ss_pred hhhhhhHHhcccchHHHHHHHHHhHHHHHhhhhhhhhhccchhhhhhhcCcHHHHHhhhhhhhcCCCc-HHHHHhhcchh
Confidence 11 0 0000 00001112211 34668889999
Q ss_pred hhhhcCCCcEEEEecCCCCCCChHHHHHHHHHHHHcCCCeEEEEcCCCCCc-CCC--CCcHHHHHHH-HHHHHHH
Q 008873 478 HHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHM-PRR--HRDRIYMEER-IWEFIER 548 (550)
Q Consensus 478 ~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p~~~H~-~~~--~~~~~~~~~~-~~~fl~~ 548 (550)
..+++|++|+|+|++.+|+.+|.. ++-.-+ ...+..+-+++-..+||- +.. ..+...++++ +.+||.+
T Consensus 316 ~~v~~I~VP~L~ina~DDPv~p~~-~ip~~~--~~~np~v~l~~T~~GGHlgfleg~~p~~~~w~~~~l~ef~~~ 387 (409)
T KOG1838|consen 316 NYVDKIKVPLLCINAADDPVVPEE-AIPIDD--IKSNPNVLLVITSHGGHLGFLEGLWPSARTWMDKLLVEFLGN 387 (409)
T ss_pred hhcccccccEEEEecCCCCCCCcc-cCCHHH--HhcCCcEEEEEeCCCceeeeeccCCCccchhHHHHHHHHHHH
Confidence 999999999999999999999864 222222 234567888888889995 211 1145566666 8888865
No 99
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=99.63 E-value=1.3e-14 Score=142.72 Aligned_cols=194 Identities=20% Similarity=0.183 Sum_probs=142.7
Q ss_pred EEEEEEECCCCceEEEEcccCCCCCCCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCceee
Q 008873 59 VRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVN 138 (550)
Q Consensus 59 ~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~ 138 (550)
.+|++.|-++...+.++ .....+..|.|||||+.+++..-......++|+.++++|+..++.+.... +
T Consensus 173 ~~l~~~D~dg~~~~~l~---------~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~---~ 240 (425)
T COG0823 173 YELALGDYDGYNQQKLT---------DSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGN---N 240 (425)
T ss_pred ceEEEEccCCcceeEec---------ccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCc---c
Confidence 45777777755555553 33456677999999998877754444336899999999998877764322 1
Q ss_pred ccCccccCCCCCccCCCc--EEEEEccCCccEEEEEeCCCceeecccccCeEEEEEEeEeecCCEEEEEEcCCCCceeEE
Q 008873 139 LHDCFTPLDKGVTKYSGG--FIWASEKTGFRHLYLHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHL 216 (550)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~--~~~~s~~~g~~~l~~~~~~~~~~~~lT~~~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l 216 (550)
..| +|+||+ ++|.++++|..+||++|+.++..++||.+.-....+ .|+|||++|+|++++.+. .+|
T Consensus 241 ~~P---------~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~Lt~~~gi~~~P-s~spdG~~ivf~Sdr~G~--p~I 308 (425)
T COG0823 241 GAP---------AFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPRLTNGFGINTSP-SWSPDGSKIVFTSDRGGR--PQI 308 (425)
T ss_pred CCc---------cCCCCCCEEEEEECCCCCccEEEEcCCCCcceecccCCccccCc-cCCCCCCEEEEEeCCCCC--cce
Confidence 112 355554 899999999999999999999988999876444444 599999999999998775 599
Q ss_pred EEEEeCCCCCCCCCCCeeeCCCCceE-EEEECCCCCEEEEeecCCCCCCEEEEEEcCCCceeEeccCC
Q 008873 217 YCAKLYPDWNHTLEAPVKLTNGKGKH-VAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLYEQ 283 (550)
Q Consensus 217 ~~v~~~~~g~~~~~~~~~lt~~~~~~-~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~~~~~l~~~ 283 (550)
|+++. +|+ ..+++|...+.. ...+||||++|+|..... ..-.+...++.++...+.++..
T Consensus 309 ~~~~~--~g~----~~~riT~~~~~~~~p~~SpdG~~i~~~~~~~-g~~~i~~~~~~~~~~~~~lt~~ 369 (425)
T COG0823 309 YLYDL--EGS----QVTRLTFSGGGNSNPVWSPDGDKIVFESSSG-GQWDIDKNDLASGGKIRILTST 369 (425)
T ss_pred EEECC--CCC----ceeEeeccCCCCcCccCCCCCCEEEEEeccC-CceeeEEeccCCCCcEEEcccc
Confidence 99998 665 568888865543 558999999999998542 2256777777766655666554
No 100
>KOG4178 consensus Soluble epoxide hydrolase [Lipid transport and metabolism]
Probab=99.63 E-value=2.4e-14 Score=130.79 Aligned_cols=205 Identities=16% Similarity=0.110 Sum_probs=132.2
Q ss_pred CceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCchhhHHHHhhccCCCchHHHHHHHHHHHHc
Q 008873 327 PYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQ 406 (550)
Q Consensus 327 ~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~ 406 (550)
.-|+|+++||-|.... .|......|+++||.|+++|.||.|.+...-....+.. .....|+.+.++.|.
T Consensus 43 ~gP~illlHGfPe~wy-------swr~q~~~la~~~~rviA~DlrGyG~Sd~P~~~~~Yt~--~~l~~di~~lld~Lg-- 111 (322)
T KOG4178|consen 43 DGPIVLLLHGFPESWY-------SWRHQIPGLASRGYRVIAPDLRGYGFSDAPPHISEYTI--DELVGDIVALLDHLG-- 111 (322)
T ss_pred CCCEEEEEccCCccch-------hhhhhhhhhhhcceEEEecCCCCCCCCCCCCCcceeeH--HHHHHHHHHHHHHhc--
Confidence 4499999999887643 34555778999999999999999997754322111000 011455555555553
Q ss_pred CCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCcc----------cc-cch----hhh-------------
Q 008873 407 GLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWD----------GY-DTF----YTE------------- 458 (550)
Q Consensus 407 ~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~----------~~-~~~----~~~------------- 458 (550)
-+|+.++||++|+.+|..++..+|+++++.|+.+...... .+ ..+ +++
T Consensus 112 ----~~k~~lvgHDwGaivaw~la~~~Perv~~lv~~nv~~~~p~~~~~~~~~~~f~~~~y~~~fQ~~~~~E~~~s~~~~ 187 (322)
T KOG4178|consen 112 ----LKKAFLVGHDWGAIVAWRLALFYPERVDGLVTLNVPFPNPKLKPLDSSKAIFGKSYYICLFQEPGKPETELSKDDT 187 (322)
T ss_pred ----cceeEEEeccchhHHHHHHHHhChhhcceEEEecCCCCCcccchhhhhccccCccceeEeccccCcchhhhccchh
Confidence 4789999999999999999999999999999876543310 00 000 000
Q ss_pred ---------hccC----CC---CCC--------cc----------------cc---ccCC--hhhhhhcCCCcEEEEecC
Q 008873 459 ---------KYMG----LP---SED--------PV----------------GY---EYSS--VMHHVHKMKGKLLLVHGM 493 (550)
Q Consensus 459 ---------~~~g----~~---~~~--------~~----------------~~---~~~~--~~~~~~~i~~P~lii~G~ 493 (550)
+-.+ .+ ..+ .+ .| ..+. .-....+++.|++++.|+
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~w~t~edi~~~~~~f~~~g~~gplNyyrn~~r~w~a~~~~~~~i~iPv~fi~G~ 267 (322)
T KOG4178|consen 188 EMLVKTFRTRKTPGPLIVPKQPNENPLWLTEEDIAFYVSKFQIDGFTGPLNYYRNFRRNWEAAPWALAKITIPVLFIWGD 267 (322)
T ss_pred HHhHHhhhccccCCccccCCCCCCccchhhHHHHHHHHhccccccccccchhhHHHhhCchhccccccccccceEEEEec
Confidence 0000 00 000 00 01 1111 122345677899999999
Q ss_pred CCCCCChHHHHHHHHHHHHcCCCeEEEEcCCCCCcCCCCCcHHHHHHHHHHHHHHh
Q 008873 494 IDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIERT 549 (550)
Q Consensus 494 ~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p~~~H~~~~~~~~~~~~~~~~~fl~~~ 549 (550)
+|...+...-.+.+++.... -.+.++++++||.. ..++..++.+.+++||++.
T Consensus 268 ~D~v~~~p~~~~~~rk~vp~--l~~~vv~~~~gH~v-qqe~p~~v~~~i~~f~~~~ 320 (322)
T KOG4178|consen 268 LDPVLPYPIFGELYRKDVPR--LTERVVIEGIGHFV-QQEKPQEVNQAILGFINSF 320 (322)
T ss_pred CcccccchhHHHHHHHhhcc--ccceEEecCCcccc-cccCHHHHHHHHHHHHHhh
Confidence 99998876334444433211 22678899999988 5588899999999999874
No 101
>PF12697 Abhydrolase_6: Alpha/beta hydrolase family; PDB: 3LLC_A 3A2N_E 3A2M_A 3A2L_A 3AFI_F 3C5V_A 3C5W_P 3E0X_A 2ZJF_A 3QYJ_A ....
Probab=99.63 E-value=9.5e-16 Score=141.12 Aligned_cols=179 Identities=20% Similarity=0.226 Sum_probs=117.6
Q ss_pred EEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCchhhHHHHhhccCCCchHHHHHHHHHHHHcCCCC
Q 008873 331 LISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAK 410 (550)
Q Consensus 331 vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d 410 (550)
||++||.+.+.. .|..+.+.| ++||.|+++|+||+|.+..... ......++..+.+..++++- .
T Consensus 1 vv~~hG~~~~~~-------~~~~~~~~l-~~~~~v~~~d~~G~G~s~~~~~------~~~~~~~~~~~~l~~~l~~~--~ 64 (228)
T PF12697_consen 1 VVFLHGFGGSSE-------SWDPLAEAL-ARGYRVIAFDLPGHGRSDPPPD------YSPYSIEDYAEDLAELLDAL--G 64 (228)
T ss_dssp EEEE-STTTTGG-------GGHHHHHHH-HTTSEEEEEECTTSTTSSSHSS------GSGGSHHHHHHHHHHHHHHT--T
T ss_pred eEEECCCCCCHH-------HHHHHHHHH-hCCCEEEEEecCCccccccccc------cCCcchhhhhhhhhhccccc--c
Confidence 689999877643 344467777 4899999999999998764321 11122444444444444432 2
Q ss_pred CCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCccccc------chhh---------------hhcc-CCCCCCc
Q 008873 411 VGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYD------TFYT---------------EKYM-GLPSEDP 468 (550)
Q Consensus 411 ~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~~~~------~~~~---------------~~~~-g~~~~~~ 468 (550)
.+++.++|||+||.+++.++.++|++++++++.+|........ .... ..+. .......
T Consensus 65 ~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (228)
T PF12697_consen 65 IKKVILVGHSMGGMIALRLAARYPDRVKGLVLLSPPPPLPDSPSRSFGPSFIRRLLAWRSRSLRRLASRFFYRWFDGDEP 144 (228)
T ss_dssp TSSEEEEEETHHHHHHHHHHHHSGGGEEEEEEESESSSHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred cccccccccccccccccccccccccccccceeecccccccccccccccchhhhhhhhccccccccccccccccccccccc
Confidence 3689999999999999999999999999999999887532110 0000 0000 0000000
Q ss_pred --------c----c----cccCChhhhhhcCCCcEEEEecCCCCCCChHHHHHHHHHHHHcCCCeEEEEcCCCCCcC
Q 008873 469 --------V----G----YEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMP 529 (550)
Q Consensus 469 --------~----~----~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p~~~H~~ 529 (550)
+ . +........+.++++|+++++|+.|..++.....++.+. ..+++++++|+++|.+
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pvl~i~g~~D~~~~~~~~~~~~~~----~~~~~~~~~~~~gH~~ 217 (228)
T PF12697_consen 145 EDLIRSSRRALAEYLRSNLWQADLSEALPRIKVPVLVIHGEDDPIVPPESAEELADK----LPNAELVVIPGAGHFL 217 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHGSSSEEEEEEETTSSSSHHHHHHHHHHH----STTEEEEEETTSSSTH
T ss_pred cccccccccccccccccccccccccccccccCCCeEEeecCCCCCCCHHHHHHHHHH----CCCCEEEEECCCCCcc
Confidence 0 0 012233456788899999999999999996666655544 3578999999999986
No 102
>COG0400 Predicted esterase [General function prediction only]
Probab=99.62 E-value=1.5e-14 Score=127.19 Aligned_cols=127 Identities=20% Similarity=0.113 Sum_probs=102.2
Q ss_pred hHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCcccccchhhhhccCCCCCCccccc
Q 008873 393 AEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTFYTEKYMGLPSEDPVGYE 472 (550)
Q Consensus 393 ~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 472 (550)
.+.+.+++..+.++..+|.+|++++|+|.|+.+++.++.++|+.|+++++.+|......-
T Consensus 80 ~~~~~~~l~~~~~~~gi~~~~ii~~GfSqGA~ial~~~l~~~~~~~~ail~~g~~~~~~~-------------------- 139 (207)
T COG0400 80 TEKLAEFLEELAEEYGIDSSRIILIGFSQGANIALSLGLTLPGLFAGAILFSGMLPLEPE-------------------- 139 (207)
T ss_pred HHHHHHHHHHHHHHhCCChhheEEEecChHHHHHHHHHHhCchhhccchhcCCcCCCCCc--------------------
Confidence 344555666666677789999999999999999999999999999999999886432100
Q ss_pred cCChhhhhhcCCCcEEEEecCCCCCCChHHHHHHHHHHHHcCCCeEEEEcCCCCCcCCCCCcHHHHHHHHHHHHHHhC
Q 008873 473 YSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIERTL 550 (550)
Q Consensus 473 ~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p~~~H~~~~~~~~~~~~~~~~~fl~~~l 550 (550)
.....-.+|+|++||+.|++||...+.++.+.|++.|.+++...++ .||.+.. +.++.+.+|+.+.+
T Consensus 140 -----~~~~~~~~pill~hG~~Dpvvp~~~~~~l~~~l~~~g~~v~~~~~~-~GH~i~~-----e~~~~~~~wl~~~~ 206 (207)
T COG0400 140 -----LLPDLAGTPILLSHGTEDPVVPLALAEALAEYLTASGADVEVRWHE-GGHEIPP-----EELEAARSWLANTL 206 (207)
T ss_pred -----cccccCCCeEEEeccCcCCccCHHHHHHHHHHHHHcCCCEEEEEec-CCCcCCH-----HHHHHHHHHHHhcc
Confidence 0011224799999999999999999999999999999999999999 7999833 45677888988753
No 103
>PF08840 BAAT_C: BAAT / Acyl-CoA thioester hydrolase C terminal; InterPro: IPR014940 Acyl-CoA thioesterases are a group of enzymes that catalyse the hydrolysis of acyl-CoAs to the free fatty acid and coenzyme A (CoASH), providing the potential to regulate intracellular levels of acyl-CoAs, free fatty acids and CoASH. Bile acid-CoA:amino acid N-acetyltransferase (BAAT) is involved in bile acid metabolism and may also act as an acyl-CoA thioesterase that regulates intracellular levels of free fatty acids []. This entry represents a catalytic domain is found at the C terminus of acyl-CoA thioester hydrolases and bile acid-CoA:amino acid N-acetyltransferases. ; PDB: 3K2I_B 3HLK_B.
Probab=99.62 E-value=7e-15 Score=132.33 Aligned_cols=157 Identities=24% Similarity=0.301 Sum_probs=96.3
Q ss_pred hHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCcccccchhhh-----hccC-----
Q 008873 393 AEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTFYTE-----KYMG----- 462 (550)
Q Consensus 393 ~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-----~~~g----- 462 (550)
++=+..|++||.+++.+++++|+|+|.|.||-+|+.+++.+| .++|+|+.+|..-.......+.. .++.
T Consensus 3 LEyfe~Ai~~L~~~p~v~~~~Igi~G~SkGaelALllAs~~~-~i~avVa~~ps~~~~~~~~~~~~~~~~lp~~~~~~~~ 81 (213)
T PF08840_consen 3 LEYFEEAIDWLKSHPEVDPDKIGIIGISKGAELALLLASRFP-QISAVVAISPSSVVFQGIGFYRDSSKPLPYLPFDISK 81 (213)
T ss_dssp CHHHHHHHHHHHCSTTB--SSEEEEEETHHHHHHHHHHHHSS-SEEEEEEES--SB--SSEEEETTE--EE----B-GGG
T ss_pred hHHHHHHHHHHHhCCCCCCCCEEEEEECHHHHHHHHHHhcCC-CccEEEEeCCceeEecchhcccCCCccCCcCCcChhh
Confidence 455789999999999999999999999999999999999988 67999998875321110000000 0000
Q ss_pred ---CCCCCccc---c------ccCChhhhhhcCCCcEEEEecCCCCCCChH-HHHHHHHHHHHcCCC--eEEEEcCCCCC
Q 008873 463 ---LPSEDPVG---Y------EYSSVMHHVHKMKGKLLLVHGMIDENVHFR-HTARLINALVAARKP--YEILIFPDERH 527 (550)
Q Consensus 463 ---~~~~~~~~---~------~~~~~~~~~~~i~~P~lii~G~~D~~v~~~-~~~~~~~~l~~~~~~--~~~~~~p~~~H 527 (550)
........ + ......-.++++++|+|+++|++|...|-. .+..+.++|++++.+ ++++.||++||
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~a~IpvE~i~~piLli~g~dD~~WpS~~~a~~i~~rL~~~~~~~~~~~l~Y~~aGH 161 (213)
T PF08840_consen 82 FSWNEPGLLRSRYAFELADDKAVEEARIPVEKIKGPILLISGEDDQIWPSSEMAEQIEERLKAAGFPHNVEHLSYPGAGH 161 (213)
T ss_dssp -EE-TTS-EE-TT-B--TTTGGGCCCB--GGG--SEEEEEEETT-SSS-HHHHHHHHHHHHHCTT-----EEEEETTB-S
T ss_pred ceecCCcceehhhhhhcccccccccccccHHHcCCCEEEEEeCCCCccchHHHHHHHHHHHHHhCCCCcceEEEcCCCCc
Confidence 00000000 0 001112347888999999999999999865 455666778888765 88999999999
Q ss_pred cCCCC---------------------------CcHHHHHHHHHHHHHHhC
Q 008873 528 MPRRH---------------------------RDRIYMEERIWEFIERTL 550 (550)
Q Consensus 528 ~~~~~---------------------------~~~~~~~~~~~~fl~~~l 550 (550)
.+..+ ....+.++++++||++||
T Consensus 162 ~i~~Py~P~~~~~~~~~~~~~~~~GG~~~~~a~A~~dsW~~~l~Fl~~~L 211 (213)
T PF08840_consen 162 LIEPPYFPHCRASYHKFIGTPLAWGGEPEAHAKAQEDSWKKILEFLRKHL 211 (213)
T ss_dssp ---STT-----EEEETTTTEEEE--B-HHHHHHHHHHHHHHHHHHHHHH-
T ss_pred eecCCCCCCcccccccccCCcccCCCChHHHHHHHHHHHHHHHHHHHHHh
Confidence 86321 145788999999999987
No 104
>TIGR03101 hydr2_PEP hydrolase, ortholog 2, exosortase system type 1 associated. This group of proteins are members of the alpha/beta hydrolase superfamily. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present in the vicinity of a second, relatively unrelated enzyme (ortholog 1, TIGR03100) of the same superfamily.
Probab=99.62 E-value=3e-14 Score=131.60 Aligned_cols=211 Identities=18% Similarity=0.159 Sum_probs=134.2
Q ss_pred EEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCchh
Q 008873 300 IVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLK 379 (550)
Q Consensus 300 ~~~~~~~~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~~ 379 (550)
.+.+++..|. +.++++.|.+. ++.|+||++||.+.... .+...+...++.|+++||.|+.+|+||+|.+...
T Consensus 2 ~~~l~~~~g~-~~~~~~~p~~~----~~~~~VlllHG~g~~~~---~~~~~~~~la~~La~~Gy~Vl~~Dl~G~G~S~g~ 73 (266)
T TIGR03101 2 PFFLDAPHGF-RFCLYHPPVAV----GPRGVVIYLPPFAEEMN---KSRRMVALQARAFAAGGFGVLQIDLYGCGDSAGD 73 (266)
T ss_pred CEEecCCCCc-EEEEEecCCCC----CCceEEEEECCCccccc---chhHHHHHHHHHHHHCCCEEEEECCCCCCCCCCc
Confidence 3556665554 66777877653 35689999999644321 1112234457888899999999999999987543
Q ss_pred hHHHHhhccCCCchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCcccccchhh--
Q 008873 380 FEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTFYT-- 457 (550)
Q Consensus 380 ~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-- 457 (550)
+.......+ .+|+..+++++.+++ ..+|+|+|+||||.+++.++.++|+.++++|+.+|+..-..+...+.
T Consensus 74 ~~~~~~~~~----~~Dv~~ai~~L~~~~---~~~v~LvG~SmGG~vAl~~A~~~p~~v~~lVL~~P~~~g~~~l~~~lrl 146 (266)
T TIGR03101 74 FAAARWDVW----KEDVAAAYRWLIEQG---HPPVTLWGLRLGALLALDAANPLAAKCNRLVLWQPVVSGKQQLQQFLRL 146 (266)
T ss_pred cccCCHHHH----HHHHHHHHHHHHhcC---CCCEEEEEECHHHHHHHHHHHhCccccceEEEeccccchHHHHHHHHHH
Confidence 322111122 688889999997763 46899999999999999999999999999999999876433221110
Q ss_pred ---hhcc-CCCCCCc---------------cccccC-ChhhhhhcC--------CCcEEEEecCCC-CCCChHHHHHHHH
Q 008873 458 ---EKYM-GLPSEDP---------------VGYEYS-SVMHHVHKM--------KGKLLLVHGMID-ENVHFRHTARLIN 508 (550)
Q Consensus 458 ---~~~~-g~~~~~~---------------~~~~~~-~~~~~~~~i--------~~P~lii~G~~D-~~v~~~~~~~~~~ 508 (550)
.+.+ +...... ..|.-. .....++++ ..++|++.-+-+ .........++.+
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 226 (266)
T TIGR03101 147 RLVARRLGGESAEASNSLRERLLAGEDVEIAGYELAPALASDLDQRQLAPAVPKNCPVHWFEVRPEEGATLSPVFSRLGE 226 (266)
T ss_pred HHHHHhccccccccchhHHhhccCCCeEEEeceecCHHHHHHHHhcccCCCCCCCCceEEEEeccccCCCCCHHHHHHHH
Confidence 0001 1110000 001000 001111111 346777765332 2233456788899
Q ss_pred HHHHcCCCeEEEEcCCC
Q 008873 509 ALVAARKPYEILIFPDE 525 (550)
Q Consensus 509 ~l~~~~~~~~~~~~p~~ 525 (550)
++++.|+.++...|++.
T Consensus 227 ~~~~~g~~v~~~~~~~~ 243 (266)
T TIGR03101 227 QWVQSGVEVTVDLVPGP 243 (266)
T ss_pred HHHHcCCeEeeeecCCc
Confidence 99999999999999997
No 105
>PRK11126 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase; Provisional
Probab=99.62 E-value=1.1e-14 Score=135.81 Aligned_cols=189 Identities=10% Similarity=0.047 Sum_probs=118.8
Q ss_pred eEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCchhhHHHHhhccCCCchHHHHHHHHHHHHcCC
Q 008873 329 KTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGL 408 (550)
Q Consensus 329 P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~ 408 (550)
|.||++||.+++.. .|......| .+|.|+++|+||+|.+..... ..+++..+.+..+.++.
T Consensus 3 p~vvllHG~~~~~~-------~w~~~~~~l--~~~~vi~~D~~G~G~S~~~~~---------~~~~~~~~~l~~~l~~~- 63 (242)
T PRK11126 3 PWLVFLHGLLGSGQ-------DWQPVGEAL--PDYPRLYIDLPGHGGSAAISV---------DGFADVSRLLSQTLQSY- 63 (242)
T ss_pred CEEEEECCCCCChH-------HHHHHHHHc--CCCCEEEecCCCCCCCCCccc---------cCHHHHHHHHHHHHHHc-
Confidence 67999999877643 234445556 379999999999998764211 12444444444444332
Q ss_pred CCCCceEEEEechhHHHHHHHHhhCCC-eeEEEEEcCCcCCccccc---------chhhh------------hcc-----
Q 008873 409 AKVGHIGLYGWSYGGYLSAITLARFPD-VFQCAVSGAPVTSWDGYD---------TFYTE------------KYM----- 461 (550)
Q Consensus 409 ~d~~~i~i~G~S~GG~~a~~~~~~~~~-~~~~~v~~~~~~~~~~~~---------~~~~~------------~~~----- 461 (550)
+.+++.++||||||.+++.++.++++ +++++++.++........ ..+.. .++
T Consensus 64 -~~~~~~lvG~S~Gg~va~~~a~~~~~~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (242)
T PRK11126 64 -NILPYWLVGYSLGGRIAMYYACQGLAGGLCGLIVEGGNPGLQNAEERQARWQNDRQWAQRFRQEPLEQVLADWYQQPVF 142 (242)
T ss_pred -CCCCeEEEEECHHHHHHHHHHHhCCcccccEEEEeCCCCCCCCHHHHHHHHhhhHHHHHHhccCcHHHHHHHHHhcchh
Confidence 34789999999999999999999865 489888876543211000 00000 000
Q ss_pred C-CCCCCcccc----------------------ccCChhhhhhcCCCcEEEEecCCCCCCChHHHHHHHHHHHHcCCCeE
Q 008873 462 G-LPSEDPVGY----------------------EYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYE 518 (550)
Q Consensus 462 g-~~~~~~~~~----------------------~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~ 518 (550)
. ........+ ...+....+.++++|+|+++|++|..+. .+.+. .+.+
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~~~~-----~~~~~-----~~~~ 212 (242)
T PRK11126 143 ASLNAEQRQQLVAKRSNNNGAAVAAMLEATSLAKQPDLRPALQALTFPFYYLCGERDSKFQ-----ALAQQ-----LALP 212 (242)
T ss_pred hccCccHHHHHHHhcccCCHHHHHHHHHhcCcccCCcHHHHhhccCCCeEEEEeCCcchHH-----HHHHH-----hcCe
Confidence 0 000000000 0011223567789999999999998542 22221 2578
Q ss_pred EEEcCCCCCcCCCCCcHHHHHHHHHHHHHH
Q 008873 519 ILIFPDERHMPRRHRDRIYMEERIWEFIER 548 (550)
Q Consensus 519 ~~~~p~~~H~~~~~~~~~~~~~~~~~fl~~ 548 (550)
+.+++++||.+ ..++.+.+.+.+.+||++
T Consensus 213 ~~~i~~~gH~~-~~e~p~~~~~~i~~fl~~ 241 (242)
T PRK11126 213 LHVIPNAGHNA-HRENPAAFAASLAQILRL 241 (242)
T ss_pred EEEeCCCCCch-hhhChHHHHHHHHHHHhh
Confidence 99999999987 457788899999999975
No 106
>PRK08775 homoserine O-acetyltransferase; Provisional
Probab=99.61 E-value=9.6e-15 Score=143.15 Aligned_cols=176 Identities=14% Similarity=0.122 Sum_probs=111.2
Q ss_pred HHHhCCcEEEEECCCCCCCCchhhHHHHhhccCCCchHHHHHHHHHHHHcCCCCCCc-eEEEEechhHHHHHHHHhhCCC
Q 008873 357 YLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGH-IGLYGWSYGGYLSAITLARFPD 435 (550)
Q Consensus 357 ~l~~~G~~vv~~d~rG~g~~~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~-i~i~G~S~GG~~a~~~~~~~~~ 435 (550)
.|.+.+|.|+++|.||+|++... .....|..+.+..+.+.- +.++ +.++||||||++++.++.++|+
T Consensus 94 ~L~~~~~~Vi~~Dl~G~g~s~~~----------~~~~~~~a~dl~~ll~~l--~l~~~~~lvG~SmGG~vA~~~A~~~P~ 161 (343)
T PRK08775 94 ALDPARFRLLAFDFIGADGSLDV----------PIDTADQADAIALLLDAL--GIARLHAFVGYSYGALVGLQFASRHPA 161 (343)
T ss_pred ccCccccEEEEEeCCCCCCCCCC----------CCCHHHHHHHHHHHHHHc--CCCcceEEEEECHHHHHHHHHHHHChH
Confidence 35456899999999998765321 011233333333333321 3335 4799999999999999999999
Q ss_pred eeEEEEEcCCcCCccccc----c---h-------------------------------hhhhccCCCC-------CCcc-
Q 008873 436 VFQCAVSGAPVTSWDGYD----T---F-------------------------------YTEKYMGLPS-------EDPV- 469 (550)
Q Consensus 436 ~~~~~v~~~~~~~~~~~~----~---~-------------------------------~~~~~~g~~~-------~~~~- 469 (550)
+++++|+.++........ . . +...+...+. ....
T Consensus 162 ~V~~LvLi~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (343)
T PRK08775 162 RVRTLVVVSGAHRAHPYAAAWRALQRRAVALGQLQCAEKHGLALARQLAMLSYRTPEEFEERFDAPPEVINGRVRVAAED 241 (343)
T ss_pred hhheEEEECccccCCHHHHHHHHHHHHHHHcCCCCCCchhHHHHHHHHHHHHcCCHHHHHHHhCCCccccCCCccchHHH
Confidence 999999987653211000 0 0 0000000000 0000
Q ss_pred --------ccccCCh-------------hhhhhcCCCcEEEEecCCCCCCChHHHHHHHHHHHHcCCCeEEEEcCC-CCC
Q 008873 470 --------GYEYSSV-------------MHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPD-ERH 527 (550)
Q Consensus 470 --------~~~~~~~-------------~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p~-~~H 527 (550)
.....++ ...+.++++|+|+++|+.|..+|+....++.+++ ....++.++++ +||
T Consensus 242 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~I~~PtLvi~G~~D~~~p~~~~~~~~~~i---~p~a~l~~i~~~aGH 318 (343)
T PRK08775 242 YLDAAGAQYVARTPVNAYLRLSESIDLHRVDPEAIRVPTVVVAVEGDRLVPLADLVELAEGL---GPRGSLRVLRSPYGH 318 (343)
T ss_pred HHHHHHHHHHHhcChhHHHHHHHHHhhcCCChhcCCCCeEEEEeCCCEeeCHHHHHHHHHHc---CCCCeEEEEeCCccH
Confidence 0000000 0124678899999999999999999888887765 23578999985 999
Q ss_pred cCCCCCcHHHHHHHHHHHHHH
Q 008873 528 MPRRHRDRIYMEERIWEFIER 548 (550)
Q Consensus 528 ~~~~~~~~~~~~~~~~~fl~~ 548 (550)
.. ..+..+.+.+.+.+||++
T Consensus 319 ~~-~lE~Pe~~~~~l~~FL~~ 338 (343)
T PRK08775 319 DA-FLKETDRIDAILTTALRS 338 (343)
T ss_pred HH-HhcCHHHHHHHHHHHHHh
Confidence 87 456788999999999975
No 107
>PRK00175 metX homoserine O-acetyltransferase; Provisional
Probab=99.60 E-value=5.3e-14 Score=139.38 Aligned_cols=236 Identities=15% Similarity=0.102 Sum_probs=142.3
Q ss_pred CCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccc-----c-ccchhHh---HHHHhCCcEEEEECCCCC-CCC
Q 008873 307 DGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSW-----I-NTVDMRA---QYLRSKGILVWKLDNRGT-ARR 376 (550)
Q Consensus 307 ~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~-----~-~~~~~~~---~~l~~~G~~vv~~d~rG~-g~~ 376 (550)
+|..+.+..+-..+. ...|.||++||.+++......+ . ..|.... ..+...+|.|+++|.+|. +++
T Consensus 31 ~~~~~~y~~~G~~~~----~~~p~vvl~HG~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~l~~~~~~vi~~Dl~G~~~~s 106 (379)
T PRK00175 31 PPVELAYETYGTLNA----DRSNAVLICHALTGDHHVAGPHSPDDPKPGWWDNMVGPGKPIDTDRYFVICSNVLGGCKGS 106 (379)
T ss_pred CCceEEEEeccccCC----CCCCEEEEeCCcCCchhhcccccccCCCCcchhhccCCCCccCccceEEEeccCCCCCCCC
Confidence 445566666543211 2248899999977664311000 0 0122111 123367999999999984 333
Q ss_pred -chhhHH-----HHhhccCCCchHHHHHHHHHHHHcCCCCCCc-eEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCc
Q 008873 377 -GLKFEA-----SIKHNCGRIDAEDQLTGAEWLIKQGLAKVGH-IGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSW 449 (550)
Q Consensus 377 -~~~~~~-----~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~-i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~ 449 (550)
+..... ..........++|+.+.+..+.++- +.++ +.++||||||.+++.++.++|++++++|+.++....
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l--~~~~~~~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~ 184 (379)
T PRK00175 107 TGPSSINPDTGKPYGSDFPVITIRDWVRAQARLLDAL--GITRLAAVVGGSMGGMQALEWAIDYPDRVRSALVIASSARL 184 (379)
T ss_pred CCCCCCCCCCCCcccCCCCcCCHHHHHHHHHHHHHHh--CCCCceEEEEECHHHHHHHHHHHhChHhhhEEEEECCCccc
Confidence 211000 0000112345677777666666543 3356 489999999999999999999999999988764321
Q ss_pred ccc---------cch--------------------------------hh-----hhccCC--CCCC----------cccc
Q 008873 450 DGY---------DTF--------------------------------YT-----EKYMGL--PSED----------PVGY 471 (550)
Q Consensus 450 ~~~---------~~~--------------------------------~~-----~~~~g~--~~~~----------~~~~ 471 (550)
... ... +. ...+.. .... .+.+
T Consensus 185 ~~~~~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~r~~~~~~~~s~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~ 264 (379)
T PRK00175 185 SAQNIAFNEVARQAILADPDWHGGDYYEHGVVPERGLAVARMIGHITYLSDDELDEKFGRELQSGELPFGFDVEFQVESY 264 (379)
T ss_pred CHHHHHHHHHHHHHHHhCCCCCCCCcccCCCChhHHHHHHHHHHHHHhcCHHHHHhhcCccccccccccCCCccchHHHH
Confidence 100 000 00 000000 0000 0000
Q ss_pred ---------ccC-----------------------ChhhhhhcCCCcEEEEecCCCCCCChHHHHHHHHHHHHcCCCeEE
Q 008873 472 ---------EYS-----------------------SVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEI 519 (550)
Q Consensus 472 ---------~~~-----------------------~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~ 519 (550)
... +....+.+|++|+|+|+|++|..+|+..+.++.+.+...+..+++
T Consensus 265 l~~~~~~~~~~~d~~~~~~~~~~~~~~d~~~~~~~d~~~~l~~I~~PtLvI~G~~D~~~p~~~~~~la~~i~~a~~~~~l 344 (379)
T PRK00175 265 LRYQGDKFVERFDANSYLYLTRALDYFDPARGRGGDLAAALARIKARFLVVSFTSDWLFPPARSREIVDALLAAGADVSY 344 (379)
T ss_pred HHHHHHHHhhccCchHHHHHHHHHHhccccCCCCCCHHHHHhcCCCCEEEEEECCccccCHHHHHHHHHHHHhcCCCeEE
Confidence 000 112345678999999999999999999999999998776667788
Q ss_pred EEcC-CCCCcCCCCCcHHHHHHHHHHHHHHh
Q 008873 520 LIFP-DERHMPRRHRDRIYMEERIWEFIERT 549 (550)
Q Consensus 520 ~~~p-~~~H~~~~~~~~~~~~~~~~~fl~~~ 549 (550)
++++ ++||.. ..+....+.+.+.+||.+.
T Consensus 345 ~~i~~~~GH~~-~le~p~~~~~~L~~FL~~~ 374 (379)
T PRK00175 345 AEIDSPYGHDA-FLLDDPRYGRLVRAFLERA 374 (379)
T ss_pred EEeCCCCCchh-HhcCHHHHHHHHHHHHHhh
Confidence 8775 899987 4466778899999999763
No 108
>PLN03084 alpha/beta hydrolase fold protein; Provisional
Probab=99.58 E-value=5.8e-14 Score=137.44 Aligned_cols=215 Identities=12% Similarity=0.085 Sum_probs=134.2
Q ss_pred CCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCchhhHHHHh
Q 008873 306 NDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIK 385 (550)
Q Consensus 306 ~~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~~~~~~~~ 385 (550)
.++..+++....+ ...|.||++||.+.... .|...+..|+ .+|.|+++|++|+|.+......
T Consensus 112 ~~~~~~~y~~~G~-------~~~~~ivllHG~~~~~~-------~w~~~~~~L~-~~~~Via~DlpG~G~S~~p~~~--- 173 (383)
T PLN03084 112 SDLFRWFCVESGS-------NNNPPVLLIHGFPSQAY-------SYRKVLPVLS-KNYHAIAFDWLGFGFSDKPQPG--- 173 (383)
T ss_pred CCceEEEEEecCC-------CCCCeEEEECCCCCCHH-------HHHHHHHHHh-cCCEEEEECCCCCCCCCCCccc---
Confidence 4666665443322 22378899999876543 3344566665 4899999999999977543210
Q ss_pred hccCCCchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCccc--ccc---hh----
Q 008873 386 HNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDG--YDT---FY---- 456 (550)
Q Consensus 386 ~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~~--~~~---~~---- 456 (550)
......++++.+.+..++++- ..+++.|+|+|+||.+++.++.++|++++++|+.+|...... ... .+
T Consensus 174 -~~~~ys~~~~a~~l~~~i~~l--~~~~~~LvG~s~GG~ia~~~a~~~P~~v~~lILi~~~~~~~~~~~p~~l~~~~~~l 250 (383)
T PLN03084 174 -YGFNYTLDEYVSSLESLIDEL--KSDKVSLVVQGYFSPPVVKYASAHPDKIKKLILLNPPLTKEHAKLPSTLSEFSNFL 250 (383)
T ss_pred -ccccCCHHHHHHHHHHHHHHh--CCCCceEEEECHHHHHHHHHHHhChHhhcEEEEECCCCccccccchHHHHHHHHHH
Confidence 001223555555555544432 335799999999999999999999999999999987642110 000 00
Q ss_pred -----h-------hhccC--CCC----CCcccc------------------ccC-Ch----hhhh------hcCCCcEEE
Q 008873 457 -----T-------EKYMG--LPS----EDPVGY------------------EYS-SV----MHHV------HKMKGKLLL 489 (550)
Q Consensus 457 -----~-------~~~~g--~~~----~~~~~~------------------~~~-~~----~~~~------~~i~~P~li 489 (550)
. ...+. .+. +....| ... .. .... .++++|+|+
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~l~~~~r~~~~~l~~~~~~l~~~l~~~~i~vPvLi 330 (383)
T PLN03084 251 LGEIFSQDPLRASDKALTSCGPYAMKEDDAMVYRRPYLTSGSSGFALNAISRSMKKELKKYIEEMRSILTDKNWKTPITV 330 (383)
T ss_pred hhhhhhcchHHHHhhhhcccCccCCCHHHHHHHhccccCCcchHHHHHHHHHHhhcccchhhHHHHhhhccccCCCCEEE
Confidence 0 00000 000 000000 000 00 0001 246899999
Q ss_pred EecCCCCCCChHHHHHHHHHHHHcCCCeEEEEcCCCCCcCCCCCcHHHHHHHHHHHHH
Q 008873 490 VHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIE 547 (550)
Q Consensus 490 i~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p~~~H~~~~~~~~~~~~~~~~~fl~ 547 (550)
++|+.|..++.....++.+. .+.++.++|+++|.+ ..+..+.+.+.+.+||.
T Consensus 331 I~G~~D~~v~~~~~~~~a~~-----~~a~l~vIp~aGH~~-~~E~Pe~v~~~I~~Fl~ 382 (383)
T PLN03084 331 CWGLRDRWLNYDGVEDFCKS-----SQHKLIELPMAGHHV-QEDCGEELGGIISGILS 382 (383)
T ss_pred EeeCCCCCcCHHHHHHHHHh-----cCCeEEEECCCCCCc-chhCHHHHHHHHHHHhh
Confidence 99999999998876666553 256889999999987 45788889999999986
No 109
>PLN02211 methyl indole-3-acetate methyltransferase
Probab=99.57 E-value=3.2e-13 Score=127.54 Aligned_cols=199 Identities=14% Similarity=0.094 Sum_probs=120.3
Q ss_pred CceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCchhhHHHHhhccCCCchHHHHHHHHHHHHc
Q 008873 327 PYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQ 406 (550)
Q Consensus 327 ~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~ 406 (550)
+.|.||++||...... .|..+...|.+.||.|+++|+||+|.+..... ....+++....+..++++
T Consensus 17 ~~p~vvliHG~~~~~~-------~w~~~~~~L~~~g~~vi~~dl~g~G~s~~~~~-------~~~~~~~~~~~l~~~i~~ 82 (273)
T PLN02211 17 QPPHFVLIHGISGGSW-------CWYKIRCLMENSGYKVTCIDLKSAGIDQSDAD-------SVTTFDEYNKPLIDFLSS 82 (273)
T ss_pred CCCeEEEECCCCCCcC-------cHHHHHHHHHhCCCEEEEecccCCCCCCCCcc-------cCCCHHHHHHHHHHHHHh
Confidence 3488999999765532 34556778888999999999999986532110 112244444444433332
Q ss_pred CCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCcccccc----------hh--hh----hcc---------
Q 008873 407 GLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDT----------FY--TE----KYM--------- 461 (550)
Q Consensus 407 ~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~~~~~----------~~--~~----~~~--------- 461 (550)
-. ..+++.++||||||.++..++..+|++++++|..++......+.. .. .. .+.
T Consensus 83 l~-~~~~v~lvGhS~GG~v~~~~a~~~p~~v~~lv~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (273)
T PLN02211 83 LP-ENEKVILVGHSAGGLSVTQAIHRFPKKICLAVYVAATMLKLGFQTDEDMKDGVPDLSEFGDVYELGFGLGPDQPPTS 161 (273)
T ss_pred cC-CCCCEEEEEECchHHHHHHHHHhChhheeEEEEeccccCCCCCCHHHHHhccccchhhhccceeeeeccCCCCCCce
Confidence 11 236899999999999999999989999999998866422100000 00 00 000
Q ss_pred --------------CCCCCCcc------------ccccCChhhhhhcC-CCcEEEEecCCCCCCChHHHHHHHHHHHHcC
Q 008873 462 --------------GLPSEDPV------------GYEYSSVMHHVHKM-KGKLLLVHGMIDENVHFRHTARLINALVAAR 514 (550)
Q Consensus 462 --------------g~~~~~~~------------~~~~~~~~~~~~~i-~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~ 514 (550)
..+..... .+..........++ ++|+++|.|++|..+|++....+.+.+.
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vP~l~I~g~~D~~ip~~~~~~m~~~~~--- 238 (273)
T PLN02211 162 AIIKKEFRRKILYQMSPQEDSTLAAMLLRPGPILALRSARFEEETGDIDKVPRVYIKTLHDHVVKPEQQEAMIKRWP--- 238 (273)
T ss_pred eeeCHHHHHHHHhcCCCHHHHHHHHHhcCCcCccccccccccccccccCccceEEEEeCCCCCCCHHHHHHHHHhCC---
Confidence 00000000 00000000112344 6799999999999999998888876642
Q ss_pred CCeEEEEcCCCCCcCCCCCcHHHHHHHHHHHH
Q 008873 515 KPYEILIFPDERHMPRRHRDRIYMEERIWEFI 546 (550)
Q Consensus 515 ~~~~~~~~p~~~H~~~~~~~~~~~~~~~~~fl 546 (550)
..+++.++ +||.. ..+....+.+.+.+..
T Consensus 239 -~~~~~~l~-~gH~p-~ls~P~~~~~~i~~~a 267 (273)
T PLN02211 239 -PSQVYELE-SDHSP-FFSTPFLLFGLLIKAA 267 (273)
T ss_pred -ccEEEEEC-CCCCc-cccCHHHHHHHHHHHH
Confidence 23677776 79986 4466666666666554
No 110
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.56 E-value=2e-12 Score=130.92 Aligned_cols=191 Identities=19% Similarity=0.162 Sum_probs=135.8
Q ss_pred eEEEEEEECCCCceEEEEcccCCCCCCCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCcee
Q 008873 58 KVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWV 137 (550)
Q Consensus 58 ~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~~ 137 (550)
...|+++|.+++..+++.. .......++|||||+.+++...+. +..+||++++++|+.+.+.......
T Consensus 169 ~~~l~~~d~~g~~~~~l~~---------~~~~~~~p~~Spdg~~la~~~~~~-~~~~i~v~d~~~g~~~~~~~~~~~~-- 236 (417)
T TIGR02800 169 RYELQVADYDGANPQTITR---------SREPILSPAWSPDGQKLAYVSFES-GKPEIYVQDLATGQREKVASFPGMN-- 236 (417)
T ss_pred cceEEEEcCCCCCCEEeec---------CCCceecccCCCCCCEEEEEEcCC-CCcEEEEEECCCCCEEEeecCCCCc--
Confidence 4579999999888777743 233466789999999998886554 3467999999999887776532211
Q ss_pred eccCccccCCCCCccCCCc--EEEEEccCCccEEEEEeCCCceeecccccCeEEEEEEeEeecCCEEEEEEcCCCCceeE
Q 008873 138 NLHDCFTPLDKGVTKYSGG--FIWASEKTGFRHLYLHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESH 215 (550)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~--~~~~s~~~g~~~l~~~~~~~~~~~~lT~~~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~ 215 (550)
..+ .|++|+ +++....+|..+||++++.+++.++|+........+ .|++||++|+|.+++.+. .+
T Consensus 237 -----~~~-----~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~-~~s~dg~~l~~~s~~~g~--~~ 303 (417)
T TIGR02800 237 -----GAP-----AFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLTRLTNGPGIDTEP-SWSPDGKSIAFTSDRGGS--PQ 303 (417)
T ss_pred -----cce-----EECCCCCEEEEEECCCCCccEEEEECCCCCEEECCCCCCCCCCE-EECCCCCEEEEEECCCCC--ce
Confidence 111 345544 677777778889999999988888888754333333 499999999999886553 58
Q ss_pred EEEEEeCCCCCCCCCCCeeeCCCC-ceEEEEECCCCCEEEEeecCCCCCCEEEEEEcCCCceeEecc
Q 008873 216 LYCAKLYPDWNHTLEAPVKLTNGK-GKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLY 281 (550)
Q Consensus 216 l~~v~~~~~g~~~~~~~~~lt~~~-~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~~~~~l~ 281 (550)
||.+++ .+. +.++++... ....+.|||||++++++.... ...+++++++.++. .+.+.
T Consensus 304 iy~~d~--~~~----~~~~l~~~~~~~~~~~~spdg~~i~~~~~~~-~~~~i~~~d~~~~~-~~~l~ 362 (417)
T TIGR02800 304 IYMMDA--DGG----EVRRLTFRGGYNASPSWSPDGDLIAFVHREG-GGFNIAVMDLDGGG-ERVLT 362 (417)
T ss_pred EEEEEC--CCC----CEEEeecCCCCccCeEECCCCCEEEEEEccC-CceEEEEEeCCCCC-eEEcc
Confidence 999998 443 456666443 345668999999998886553 33489999987654 44454
No 111
>COG2936 Predicted acyl esterases [General function prediction only]
Probab=99.56 E-value=1.2e-13 Score=136.41 Aligned_cols=216 Identities=21% Similarity=0.306 Sum_probs=149.8
Q ss_pred CCeEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHh--HHHHhCCcEEEEECCCCCC
Q 008873 297 PPDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRA--QYLRSKGILVWKLDNRGTA 374 (550)
Q Consensus 297 ~~~~~~~~~~~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~--~~l~~~G~~vv~~d~rG~g 374 (550)
....+.++..||+.|...+|+|++. +++|+++..+-.|....... +........ ..++++||+||..|.||.+
T Consensus 18 ~~~~v~V~MRDGvrL~~dIy~Pa~~----g~~Pvll~~~~~Py~k~~~~-~~~~~~~~p~~~~~aa~GYavV~qDvRG~~ 92 (563)
T COG2936 18 IERDVMVPMRDGVRLAADIYRPAGA----GPLPVLLSRTRLPYRKRNGT-FGPQLSALPQPAWFAAQGYAVVNQDVRGRG 92 (563)
T ss_pred eeeeeeEEecCCeEEEEEEEccCCC----CCCceeEEeecccccccccc-CcchhhcccccceeecCceEEEEecccccc
Confidence 4567899999999999999999875 68999998885454433111 111111111 2688999999999999999
Q ss_pred CCchhhHHHHhhccCCCchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCccc---
Q 008873 375 RRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDG--- 451 (550)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~~--- 451 (550)
+|...+..... .+.+|-.+.|+||.++++.+ .+|+.+|.||+|+..+++|+..|.-.||++..++..|.-.
T Consensus 93 ~SeG~~~~~~~-----~E~~Dg~D~I~Wia~QpWsN-G~Vgm~G~SY~g~tq~~~Aa~~pPaLkai~p~~~~~D~y~d~~ 166 (563)
T COG2936 93 GSEGVFDPESS-----REAEDGYDTIEWLAKQPWSN-GNVGMLGLSYLGFTQLAAAALQPPALKAIAPTEGLVDRYRDDA 166 (563)
T ss_pred cCCcccceecc-----ccccchhHHHHHHHhCCccC-CeeeeecccHHHHHHHHHHhcCCchheeecccccccccccccc
Confidence 99877663322 46899999999999999866 6899999999999999999998888899999888766210
Q ss_pred -c--------cchhh---------------------------hhc--------cCCCCC------C---ccccccCChhh
Q 008873 452 -Y--------DTFYT---------------------------EKY--------MGLPSE------D---PVGYEYSSVMH 478 (550)
Q Consensus 452 -~--------~~~~~---------------------------~~~--------~g~~~~------~---~~~~~~~~~~~ 478 (550)
+ ...|. +.+ .+.|+. . .+.|.+.+-..
T Consensus 167 ~~~G~~~~~~~~~W~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~~~~~~hp~~ddfW~~~~~~~ 246 (563)
T COG2936 167 FYGGGAELNFNLGWALTMLAPQPLTRIRPARLDRLAPLRVGAERWRDAPTELLEGEPYFLELWLEHPLRDDFWRRGDRVA 246 (563)
T ss_pred ccCcchhhhhhHHHHhhhcccCcccccccccccccchhhhhhccccccccchhccCcccchhhhcCCCccchhhccCccc
Confidence 0 00000 000 011111 0 01344445566
Q ss_pred hhhcCCCcEEEEecCCCCCCChHHHHHHHHHHHHcCCCeEEEEcCCCCCc
Q 008873 479 HVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHM 528 (550)
Q Consensus 479 ~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p~~~H~ 528 (550)
...++++|+|.+.|-.|.. ...+.+++..+... +..+++-|- .|.
T Consensus 247 d~~~i~vP~L~i~gW~D~~--l~~~~~~~~~~~~r--~~~lvvgPw-~H~ 291 (563)
T COG2936 247 DLSKIKVPALVIGGWSDGY--LHTAIKLFAFLRSR--PVKLVVGPW-THG 291 (563)
T ss_pred ccccCCCcEEEEccccccc--ccchHHHhhhcccC--CceeEEccc-ccC
Confidence 7888999999999999974 44667777777554 344554443 454
No 112
>KOG4409 consensus Predicted hydrolase/acyltransferase (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=99.56 E-value=1.8e-13 Score=125.33 Aligned_cols=205 Identities=19% Similarity=0.235 Sum_probs=126.2
Q ss_pred CceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCchhhHHHHhhccCCCchHHHHHHHHHHHHc
Q 008873 327 PYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQ 406 (550)
Q Consensus 327 ~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~ 406 (550)
..+.+|++||.+.+.. .|.. ....|++ ...|.++|..|.|.+.+.--.. + .......+++.++.-...
T Consensus 89 ~~~plVliHGyGAg~g---~f~~----Nf~~La~-~~~vyaiDllG~G~SSRP~F~~---d-~~~~e~~fvesiE~WR~~ 156 (365)
T KOG4409|consen 89 NKTPLVLIHGYGAGLG---LFFR----NFDDLAK-IRNVYAIDLLGFGRSSRPKFSI---D-PTTAEKEFVESIEQWRKK 156 (365)
T ss_pred CCCcEEEEeccchhHH---HHHH----hhhhhhh-cCceEEecccCCCCCCCCCCCC---C-cccchHHHHHHHHHHHHH
Confidence 3455677999655543 1211 2344555 8999999999999886531111 1 111122333333333222
Q ss_pred CCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCccc--c-------c-chh--------------hhhccC
Q 008873 407 GLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDG--Y-------D-TFY--------------TEKYMG 462 (550)
Q Consensus 407 ~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~~--~-------~-~~~--------------~~~~~g 462 (550)
- .-+++.|+|||+|||++..+|.+||++++.+|+.+|..-... + . .++ .-+.+|
T Consensus 157 ~--~L~KmilvGHSfGGYLaa~YAlKyPerV~kLiLvsP~Gf~~~~~~~~~~~~~~~~w~~~~~~~~~~~nPl~~LR~~G 234 (365)
T KOG4409|consen 157 M--GLEKMILVGHSFGGYLAAKYALKYPERVEKLILVSPWGFPEKPDSEPEFTKPPPEWYKALFLVATNFNPLALLRLMG 234 (365)
T ss_pred c--CCcceeEeeccchHHHHHHHHHhChHhhceEEEecccccccCCCcchhhcCCChHHHhhhhhhhhcCCHHHHHHhcc
Confidence 2 346899999999999999999999999999999988521100 0 0 000 000111
Q ss_pred -----------------CCC---CC-------------------------ccccccCChhhhhhcCC--CcEEEEecCCC
Q 008873 463 -----------------LPS---ED-------------------------PVGYEYSSVMHHVHKMK--GKLLLVHGMID 495 (550)
Q Consensus 463 -----------------~~~---~~-------------------------~~~~~~~~~~~~~~~i~--~P~lii~G~~D 495 (550)
.|. ++ +-.+.+...+..+..++ +|+++|+|+.|
T Consensus 235 p~Gp~Lv~~~~~d~~~k~~~~~~ed~l~~YiY~~n~~~psgE~~fk~l~~~~g~Ar~Pm~~r~~~l~~~~pv~fiyG~~d 314 (365)
T KOG4409|consen 235 PLGPKLVSRLRPDRFRKFPSLIEEDFLHEYIYHCNAQNPSGETAFKNLFEPGGWARRPMIQRLRELKKDVPVTFIYGDRD 314 (365)
T ss_pred ccchHHHhhhhHHHHHhccccchhHHHHHHHHHhcCCCCcHHHHHHHHHhccchhhhhHHHHHHhhccCCCEEEEecCcc
Confidence 010 00 11122233345566666 89999999998
Q ss_pred CCCChHHHHHHHHHHHHcCCCeEEEEcCCCCCcCCCCCcHHHHHHHHHHHHHHh
Q 008873 496 ENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIERT 549 (550)
Q Consensus 496 ~~v~~~~~~~~~~~l~~~~~~~~~~~~p~~~H~~~~~~~~~~~~~~~~~fl~~~ 549 (550)
-+ ....+.++...+ ....++.+++|++||.. .-.+.+.+.+.++.++++.
T Consensus 315 Wm-D~~~g~~~~~~~--~~~~~~~~~v~~aGHhv-ylDnp~~Fn~~v~~~~~~~ 364 (365)
T KOG4409|consen 315 WM-DKNAGLEVTKSL--MKEYVEIIIVPGAGHHV-YLDNPEFFNQIVLEECDKV 364 (365)
T ss_pred cc-cchhHHHHHHHh--hcccceEEEecCCCcee-ecCCHHHHHHHHHHHHhcc
Confidence 54 455566666655 34568999999999987 4467788888888888753
No 113
>KOG3043 consensus Predicted hydrolase related to dienelactone hydrolase [General function prediction only]
Probab=99.55 E-value=1.6e-13 Score=117.23 Aligned_cols=169 Identities=17% Similarity=0.164 Sum_probs=129.0
Q ss_pred hhHhHHHHhCCcEEEEECCCCC-CCC----chhhHHHHhhccCCCchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHH
Q 008873 352 DMRAQYLRSKGILVWKLDNRGT-ARR----GLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLS 426 (550)
Q Consensus 352 ~~~~~~l~~~G~~vv~~d~rG~-g~~----~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a 426 (550)
...+..++.+||.|+.||+-.. ..+ .......+.+.-.+...+|+...++||+.++ +..+||++|+++||.++
T Consensus 57 r~~Adk~A~~Gy~v~vPD~~~Gdp~~~~~~~~~~~~w~~~~~~~~~~~~i~~v~k~lk~~g--~~kkIGv~GfCwGak~v 134 (242)
T KOG3043|consen 57 REGADKVALNGYTVLVPDFFRGDPWSPSLQKSERPEWMKGHSPPKIWKDITAVVKWLKNHG--DSKKIGVVGFCWGAKVV 134 (242)
T ss_pred HHHHHHHhcCCcEEEcchhhcCCCCCCCCChhhhHHHHhcCCcccchhHHHHHHHHHHHcC--CcceeeEEEEeecceEE
Confidence 3457778889999999996532 111 1122233334444566889999999999776 67899999999999999
Q ss_pred HHHHhhCCCeeEEEEEcCCcCCcccccchhhhhccCCCCCCccccccCChhhhhhcCCCcEEEEecCCCCCCChHHHHHH
Q 008873 427 AITLARFPDVFQCAVSGAPVTSWDGYDTFYTEKYMGLPSEDPVGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARL 506 (550)
Q Consensus 427 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~ 506 (550)
..+....+ .|.++++..|..- ....+.++++|+|++.|+.|..+|+..-.++
T Consensus 135 v~~~~~~~-~f~a~v~~hps~~---------------------------d~~D~~~vk~Pilfl~ae~D~~~p~~~v~~~ 186 (242)
T KOG3043|consen 135 VTLSAKDP-EFDAGVSFHPSFV---------------------------DSADIANVKAPILFLFAELDEDVPPKDVKAW 186 (242)
T ss_pred EEeeccch-hheeeeEecCCcC---------------------------ChhHHhcCCCCEEEEeecccccCCHHHHHHH
Confidence 88888766 7888888766311 1356788899999999999999999988888
Q ss_pred HHHHHHcCC-CeEEEEcCCCCCcCCC----------CCcHHHHHHHHHHHHHHhC
Q 008873 507 INALVAARK-PYEILIFPDERHMPRR----------HRDRIYMEERIWEFIERTL 550 (550)
Q Consensus 507 ~~~l~~~~~-~~~~~~~p~~~H~~~~----------~~~~~~~~~~~~~fl~~~l 550 (550)
-+++..... ..++.+|++.+|+|.. ....++.++.++.||+++|
T Consensus 187 ee~lk~~~~~~~~v~~f~g~~HGf~~~r~~~~~Ped~~~~eea~~~~~~Wf~~y~ 241 (242)
T KOG3043|consen 187 EEKLKENPAVGSQVKTFSGVGHGFVARRANISSPEDKKAAEEAYQRFISWFKHYL 241 (242)
T ss_pred HHHHhcCcccceeEEEcCCccchhhhhccCCCChhHHHHHHHHHHHHHHHHHHhh
Confidence 888876543 4589999999999853 1335778999999999885
No 114
>PRK10439 enterobactin/ferric enterobactin esterase; Provisional
Probab=99.50 E-value=3e-12 Score=126.35 Aligned_cols=206 Identities=15% Similarity=0.120 Sum_probs=127.6
Q ss_pred CCCCeEEEEEcC-CCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCC----cEEEEEC
Q 008873 295 LEPPDIVQIQAN-DGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKG----ILVWKLD 369 (550)
Q Consensus 295 ~~~~~~~~~~~~-~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G----~~vv~~d 369 (550)
....+.+.+.+. -|.+..+++|.|++.. ++++|||+++||....... ........|.+.| .+||++|
T Consensus 177 ~g~~~~~~~~S~~Lg~~r~v~VY~P~~y~--~~~~PvlyllDG~~w~~~~------~~~~~ld~li~~g~i~P~ivV~id 248 (411)
T PRK10439 177 ESPAKEIIWKSERLGNSRRVWIYTTGDAA--PEERPLAILLDGQFWAESM------PVWPALDSLTHRGQLPPAVYLLID 248 (411)
T ss_pred CCceEEEEEEccccCCceEEEEEECCCCC--CCCCCEEEEEECHHhhhcC------CHHHHHHHHHHcCCCCceEEEEEC
Confidence 334566677664 4677889999998763 3689999999996543210 1122344555666 5678888
Q ss_pred CCCCCCCchhhHHHHhhccCCCchHHH-HHHHHHHHHcC--CCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCc
Q 008873 370 NRGTARRGLKFEASIKHNCGRIDAEDQ-LTGAEWLIKQG--LAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPV 446 (550)
Q Consensus 370 ~rG~g~~~~~~~~~~~~~~~~~~~~D~-~~~~~~l~~~~--~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~ 446 (550)
.........+.. ....+ .+.+ .+.+-++.++. ..|+++.+|.|+||||+.|++++.++|++|.++++.+|.
T Consensus 249 ~~~~~~R~~el~--~~~~f----~~~l~~eLlP~I~~~y~~~~d~~~~~IaG~S~GGl~AL~~al~~Pd~Fg~v~s~Sgs 322 (411)
T PRK10439 249 AIDTTHRSQELP--CNADF----WLAVQQELLPQVRAIAPFSDDADRTVVAGQSFGGLAALYAGLHWPERFGCVLSQSGS 322 (411)
T ss_pred CCCcccccccCC--chHHH----HHHHHHHHHHHHHHhCCCCCCccceEEEEEChHHHHHHHHHHhCcccccEEEEeccc
Confidence 643221111110 00010 1111 23334555442 257889999999999999999999999999999999986
Q ss_pred CCcccccchhhhhccCCCCCCccccccCChhhh--hhcCCCcEEEEecCCCCCCChHHHHHHHHHHHHcCCCeEEEEcCC
Q 008873 447 TSWDGYDTFYTEKYMGLPSEDPVGYEYSSVMHH--VHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPD 524 (550)
Q Consensus 447 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~--~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p~ 524 (550)
.-|.... + .....+.. .+.. ...-...++|-+|..|... ...+.++++.|+++|.++++.++++
T Consensus 323 ~ww~~~~--------~---~~~~~l~~--~l~~~~~~~~~lr~~i~~G~~E~~~-~~~~~~l~~~L~~~G~~~~~~~~~G 388 (411)
T PRK10439 323 FWWPHRG--------G---QQEGVLLE--QLKAGEVSARGLRIVLEAGRREPMI-MRANQALYAQLHPAGHSVFWRQVDG 388 (411)
T ss_pred eecCCcc--------C---CchhHHHH--HHHhcccCCCCceEEEeCCCCCchH-HHHHHHHHHHHHHCCCcEEEEECCC
Confidence 4222100 0 00000000 0001 1111236888899988543 5678999999999999999999998
Q ss_pred CCCcC
Q 008873 525 ERHMP 529 (550)
Q Consensus 525 ~~H~~ 529 (550)
||..
T Consensus 389 -GHd~ 392 (411)
T PRK10439 389 -GHDA 392 (411)
T ss_pred -CcCH
Confidence 6975
No 115
>PRK06765 homoserine O-acetyltransferase; Provisional
Probab=99.49 E-value=1.4e-12 Score=128.05 Aligned_cols=234 Identities=15% Similarity=0.152 Sum_probs=146.5
Q ss_pred cEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeeccccc-----ccc-hh---HhHHHHhCCcEEEEECCCCCCCC---
Q 008873 309 TVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWI-----NTV-DM---RAQYLRSKGILVWKLDNRGTARR--- 376 (550)
Q Consensus 309 ~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~-----~~~-~~---~~~~l~~~G~~vv~~d~rG~g~~--- 376 (550)
.+|.+..|-..+. .+-++||++|+-.++......+. ..| .. .-+.+-..-|-|+++|.-|++.+
T Consensus 41 ~~~~Y~t~G~ln~----~~~n~vlv~h~~tg~~h~~~~~~~~~~~~gww~~~iG~g~~lDt~~yfvi~~n~lG~~~~~~p 116 (389)
T PRK06765 41 VQMGYETYGTLNR----AKSNVILITHYFSATSHAAGKYTADDEESGYWDGLIGPGKAIDTNKYFVISTDTLCNVQVKDP 116 (389)
T ss_pred ceEEEEeccccCC----CCCCEEEEeCCCCCchhhcccccccCCCcccHHhccCCCCCcCCCceEEEEecccCCCcCCCC
Confidence 4566666655443 34589999999655432211100 111 10 12234456799999999987531
Q ss_pred -----chhhHHHH-----hhccCCCchHHHHHHHHHHHHcCCCCCCceE-EEEechhHHHHHHHHhhCCCeeEEEEEcCC
Q 008873 377 -----GLKFEASI-----KHNCGRIDAEDQLTGAEWLIKQGLAKVGHIG-LYGWSYGGYLSAITLARFPDVFQCAVSGAP 445 (550)
Q Consensus 377 -----~~~~~~~~-----~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~-i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~ 445 (550)
|..-.+.. ..++....+.|+.+++..++++- .-+++. ++||||||++++.++.++|++++.+|++++
T Consensus 117 ~~g~tgp~s~~p~tg~~~~~~fP~~t~~d~~~~~~~ll~~l--gi~~~~~vvG~SmGG~ial~~a~~~P~~v~~lv~ia~ 194 (389)
T PRK06765 117 NVITTGPASINPKTGKPYGMDFPVVTILDFVRVQKELIKSL--GIARLHAVMGPSMGGMQAQEWAVHYPHMVERMIGVIG 194 (389)
T ss_pred CCCCCCCCCCCcCCCCccCCCCCcCcHHHHHHHHHHHHHHc--CCCCceEEEEECHHHHHHHHHHHHChHhhheEEEEec
Confidence 21111010 01344567889888888887653 345775 999999999999999999999999888754
Q ss_pred cCC---cc--c-------------------cc-----------------------chhhhhccCC------CC------C
Q 008873 446 VTS---WD--G-------------------YD-----------------------TFYTEKYMGL------PS------E 466 (550)
Q Consensus 446 ~~~---~~--~-------------------~~-----------------------~~~~~~~~g~------~~------~ 466 (550)
... +. . |. .++.+++... +. .
T Consensus 195 ~~~~~~~~~~~~~~~~~~ai~~dp~~~~G~y~~~~~p~~Gl~~a~~~~~~~~~s~~~~~~~f~r~~~~~~~~~~~~~~~~ 274 (389)
T PRK06765 195 NPQNDAWTSVNVLQNWAEAIRLDPNWKGGKYYGEEQPMKGLTLALRMMTMNAFDEHFYETTFPRNASIEVDPYEKVSTLT 274 (389)
T ss_pred CCCCChhHHHHHHHHHHHHHHhCCCCCCCCCCCCCCchHHHHHHHHHHHHHcCCHHHHHHHcCcCccccccccccccchh
Confidence 321 10 0 00 0000000000 00 0
Q ss_pred Ccccccc-------------------------------CChhhhhhcCCCcEEEEecCCCCCCChHHHHHHHHHHHHcCC
Q 008873 467 DPVGYEY-------------------------------SSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARK 515 (550)
Q Consensus 467 ~~~~~~~-------------------------------~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~ 515 (550)
..+.|.. .+....+.++++|+|+|+|+.|..+|+..+.++.+.+...+.
T Consensus 275 ~~e~yl~~~~~~~~~~~Dan~~l~l~~a~~~~d~g~~~~dl~~~L~~I~~PtLvI~G~~D~l~p~~~~~~la~~lp~~~~ 354 (389)
T PRK06765 275 SFEKEINKATYRRAELVDANHWLYLAKAVQLFDAGHGFSSLEEALSNIEANVLMIPCKQDLLQPPRYNYKMVDILQKQGK 354 (389)
T ss_pred hHHHHHHHHHHHhhhccChhhHHHHHHHHHhcCCccccCCHHHHHhcCCCCEEEEEeCCCCCCCHHHHHHHHHHhhhcCC
Confidence 0001100 023345667899999999999999999999999888876666
Q ss_pred CeEEEEcCC-CCCcCCCCCcHHHHHHHHHHHHHHh
Q 008873 516 PYEILIFPD-ERHMPRRHRDRIYMEERIWEFIERT 549 (550)
Q Consensus 516 ~~~~~~~p~-~~H~~~~~~~~~~~~~~~~~fl~~~ 549 (550)
++++.++++ .||.. ..++...+.+.+.+||++.
T Consensus 355 ~a~l~~I~s~~GH~~-~le~p~~~~~~I~~FL~~~ 388 (389)
T PRK06765 355 YAEVYEIESINGHMA-GVFDIHLFEKKIYEFLNRK 388 (389)
T ss_pred CeEEEEECCCCCcch-hhcCHHHHHHHHHHHHccc
Confidence 789999986 89986 4467788899999999753
No 116
>COG3509 LpqC Poly(3-hydroxybutyrate) depolymerase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.47 E-value=1.7e-12 Score=116.18 Aligned_cols=231 Identities=15% Similarity=0.070 Sum_probs=140.7
Q ss_pred eEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCC-CCCCc
Q 008873 299 DIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRG-TARRG 377 (550)
Q Consensus 299 ~~~~~~~~~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG-~g~~~ 377 (550)
+..+|.+ +|....+++|.|.... ++.|+||++||+.++........ .| -+.....||.|+.||.-. +-.-.
T Consensus 36 ~~~s~~~-~g~~r~y~l~vP~g~~---~~apLvv~LHG~~~sgag~~~~s-g~---d~lAd~~gFlV~yPdg~~~~wn~~ 107 (312)
T COG3509 36 SVASFDV-NGLKRSYRLYVPPGLP---SGAPLVVVLHGSGGSGAGQLHGT-GW---DALADREGFLVAYPDGYDRAWNAN 107 (312)
T ss_pred Ccccccc-CCCccceEEEcCCCCC---CCCCEEEEEecCCCChHHhhccc-ch---hhhhcccCcEEECcCccccccCCC
Confidence 4445554 5677899999999864 34499999999766543222211 22 234446899999996332 11011
Q ss_pred hhhHH--HHhhccCCCchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCC-cc-ccc
Q 008873 378 LKFEA--SIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTS-WD-GYD 453 (550)
Q Consensus 378 ~~~~~--~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~-~~-~~~ 453 (550)
..+.. ......+..++..+.+.+..|+.+..||+.||.|.|.|.||.|+.++++.+|++|.++..+++... -. ...
T Consensus 108 ~~~~~~~p~~~~~g~ddVgflr~lva~l~~~~gidp~RVyvtGlS~GG~Ma~~lac~~p~~faa~A~VAg~~~~~~a~~~ 187 (312)
T COG3509 108 GCGNWFGPADRRRGVDDVGFLRALVAKLVNEYGIDPARVYVTGLSNGGRMANRLACEYPDIFAAIAPVAGLLALGVACTP 187 (312)
T ss_pred cccccCCcccccCCccHHHHHHHHHHHHHHhcCcCcceEEEEeeCcHHHHHHHHHhcCcccccceeeeecccCCCcccCC
Confidence 11111 111133455677788888899999999999999999999999999999999999999988887642 00 000
Q ss_pred c--hhhhhccCCCCCCccccccCChhhhhhcCCCcEEEEecCCCCCCChHHHHHHHHHHHHc------------------
Q 008873 454 T--FYTEKYMGLPSEDPVGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAA------------------ 513 (550)
Q Consensus 454 ~--~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~------------------ 513 (550)
. .-.-+.-|.+. |..-...=..| |.+|..|..++..+..+..+++...
T Consensus 188 ~rp~~~m~~~G~~D----------p~~p~~gG~~~--~g~g~~~~~v~~~~~~~~Waa~ng~~~~p~~~~~~~~~~~~~~ 255 (312)
T COG3509 188 PRPVSVMAFHGTAD----------PLNPYHGGGVP--IGRGQRDGVVSAADLAARWAAVNGCQAGPDTAELPDVGDGTDY 255 (312)
T ss_pred CCchhHHHhcCCCC----------CCCCCCCCCcc--cccccccccccHHHHHHHHHHhcCCCCCCcccccCCCccccee
Confidence 0 00000001111 11111111123 7777888777555555555554221
Q ss_pred -----CCCeEEEEcCCCCCcCCCCC-----------cHHHHHHHHHHHHHHh
Q 008873 514 -----RKPYEILIFPDERHMPRRHR-----------DRIYMEERIWEFIERT 549 (550)
Q Consensus 514 -----~~~~~~~~~p~~~H~~~~~~-----------~~~~~~~~~~~fl~~~ 549 (550)
+.++++..+.+.||.+.... ...+.-+.|.+||..+
T Consensus 256 ~~~~~~~~V~~y~i~g~GH~wp~~~~~~~~~~g~~t~~~dat~~iw~Ff~~~ 307 (312)
T COG3509 256 DTCDGNARVELYTIDGGGHTWPGGTQYGPAALGMSTRGFDATERIWRFFRQH 307 (312)
T ss_pred eccCCCcceEEEEEeCCcccCcCCCCCCcccccccccCcchHHHHHHHHHhc
Confidence 24678889999999864211 1123457788888765
No 117
>KOG1454 consensus Predicted hydrolase/acyltransferase (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=99.47 E-value=1.3e-12 Score=124.97 Aligned_cols=203 Identities=18% Similarity=0.203 Sum_probs=130.7
Q ss_pred CceEEEEEcCCCCceeecccccccchhHhHHHHh-CCcEEEEECCCCCCCCchhhHHHHhhccCCCchHHHHHHHHHHHH
Q 008873 327 PYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRS-KGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIK 405 (550)
Q Consensus 327 ~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~-~G~~vv~~d~rG~g~~~~~~~~~~~~~~~~~~~~D~~~~~~~l~~ 405 (550)
..|.||++||-..+.. .|+.....|.+ .|+.|+++|..|.|.++..... ......+....+..+..
T Consensus 57 ~~~pvlllHGF~~~~~-------~w~~~~~~L~~~~~~~v~aiDl~G~g~~s~~~~~------~~y~~~~~v~~i~~~~~ 123 (326)
T KOG1454|consen 57 DKPPVLLLHGFGASSF-------SWRRVVPLLSKAKGLRVLAIDLPGHGYSSPLPRG------PLYTLRELVELIRRFVK 123 (326)
T ss_pred CCCcEEEeccccCCcc-------cHhhhccccccccceEEEEEecCCCCcCCCCCCC------CceehhHHHHHHHHHHH
Confidence 4578888999544322 23333444443 3799999999997733321111 11446666666666655
Q ss_pred cCCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEE---EcCCcCCccccc---------------------------ch
Q 008873 406 QGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAV---SGAPVTSWDGYD---------------------------TF 455 (550)
Q Consensus 406 ~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v---~~~~~~~~~~~~---------------------------~~ 455 (550)
+.. ..++.++|||+||++++.+|+.+|+.++.++ ...+........ ..
T Consensus 124 ~~~--~~~~~lvghS~Gg~va~~~Aa~~P~~V~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 201 (326)
T KOG1454|consen 124 EVF--VEPVSLVGHSLGGIVALKAAAYYPETVDSLVLLDLLGPPVYSTPKGIKGLRRLLDKFLSALELLIPLSLTEPVRL 201 (326)
T ss_pred hhc--CcceEEEEeCcHHHHHHHHHHhCcccccceeeecccccccccCCcchhHHHHhhhhhccHhhhcCccccccchhh
Confidence 532 2459999999999999999999999999999 444432210000 00
Q ss_pred hhhhcc------C-CCC---C--------------C----ccccc-----cCChhhhhhcCC-CcEEEEecCCCCCCChH
Q 008873 456 YTEKYM------G-LPS---E--------------D----PVGYE-----YSSVMHHVHKMK-GKLLLVHGMIDENVHFR 501 (550)
Q Consensus 456 ~~~~~~------g-~~~---~--------------~----~~~~~-----~~~~~~~~~~i~-~P~lii~G~~D~~v~~~ 501 (550)
+.+... . .+. + . .+.+. .......+.++. +|+||++|+.|..+|.+
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~pvlii~G~~D~~~p~~ 281 (326)
T KOG1454|consen 202 VSEGLLRCLKVVYTDPSRLLEKLLHLLSRPVKEHFHRDARLSLFLELLGFDENLLSLIKKIWKCPVLIIWGDKDQIVPLE 281 (326)
T ss_pred eeHhhhcceeeeccccccchhhhhhheecccccchhhhheeeEEEeccCccchHHHhhccccCCceEEEEcCcCCccCHH
Confidence 000000 0 000 0 0 00000 023344566676 99999999999999999
Q ss_pred HHHHHHHHHHHcCCCeEEEEcCCCCCcCCCCCcHHHHHHHHHHHHHHh
Q 008873 502 HTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIERT 549 (550)
Q Consensus 502 ~~~~~~~~l~~~~~~~~~~~~p~~~H~~~~~~~~~~~~~~~~~fl~~~ 549 (550)
.+..+.+++ .++++.+++++||.. +.+..+.+...+..|+.++
T Consensus 282 ~~~~~~~~~----pn~~~~~I~~~gH~~-h~e~Pe~~~~~i~~Fi~~~ 324 (326)
T KOG1454|consen 282 LAEELKKKL----PNAELVEIPGAGHLP-HLERPEEVAALLRSFIARL 324 (326)
T ss_pred HHHHHHhhC----CCceEEEeCCCCccc-ccCCHHHHHHHHHHHHHHh
Confidence 776666554 678999999999988 4488899999999999875
No 118
>PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding
Probab=99.46 E-value=2.6e-12 Score=147.72 Aligned_cols=210 Identities=16% Similarity=0.147 Sum_probs=130.2
Q ss_pred CceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCchhhHHHHhhccCCCchHHHHHHHHHHHHc
Q 008873 327 PYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQ 406 (550)
Q Consensus 327 ~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~ 406 (550)
..|+||++||.+++.. . |......|. .+|.|+++|+||+|.+................++++.+.+..+.++
T Consensus 1370 ~~~~vVllHG~~~s~~---~----w~~~~~~L~-~~~rVi~~Dl~G~G~S~~~~~~~~~~~~~~~si~~~a~~l~~ll~~ 1441 (1655)
T PLN02980 1370 EGSVVLFLHGFLGTGE---D----WIPIMKAIS-GSARCISIDLPGHGGSKIQNHAKETQTEPTLSVELVADLLYKLIEH 1441 (1655)
T ss_pred CCCeEEEECCCCCCHH---H----HHHHHHHHh-CCCEEEEEcCCCCCCCCCccccccccccccCCHHHHHHHHHHHHHH
Confidence 3478999999776643 2 333455564 4699999999999977532110000001122355555555544443
Q ss_pred CCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCcccc----------c---c--------hhhhhccCC--
Q 008873 407 GLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGY----------D---T--------FYTEKYMGL-- 463 (550)
Q Consensus 407 ~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~~~----------~---~--------~~~~~~~g~-- 463 (550)
- +.+++.|+||||||.+++.++.++|++++++++.++...+... . . .+...+...
T Consensus 1442 l--~~~~v~LvGhSmGG~iAl~~A~~~P~~V~~lVlis~~p~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~ 1519 (1655)
T PLN02980 1442 I--TPGKVTLVGYSMGARIALYMALRFSDKIEGAVIISGSPGLKDEVARKIRSAKDDSRARMLIDHGLEIFLENWYSGEL 1519 (1655)
T ss_pred h--CCCCEEEEEECHHHHHHHHHHHhChHhhCEEEEECCCCccCchHHHHHHhhhhhHHHHHHHhhhHHHHHHHhccHHH
Confidence 2 4568999999999999999999999999999887654221100 0 0 000001000
Q ss_pred ---CCC---------------Cccc----cc------cCChhhhhhcCCCcEEEEecCCCCCCChHHHHHHHHHHHHcC-
Q 008873 464 ---PSE---------------DPVG----YE------YSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAAR- 514 (550)
Q Consensus 464 ---~~~---------------~~~~----~~------~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~- 514 (550)
... +... +. ..+....+.++++|+|+++|++|..++ ..+.++.+.+....
T Consensus 1520 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~dl~~~L~~I~~PtLlI~Ge~D~~~~-~~a~~~~~~i~~a~~ 1598 (1655)
T PLN02980 1520 WKSLRNHPHFNKIVASRLLHKDVPSLAKLLSDLSIGRQPSLWEDLKQCDTPLLLVVGEKDVKFK-QIAQKMYREIGKSKE 1598 (1655)
T ss_pred hhhhccCHHHHHHHHHHHhcCCHHHHHHHHHHhhhcccchHHHHHhhCCCCEEEEEECCCCccH-HHHHHHHHHcccccc
Confidence 000 0000 00 011123467788999999999998775 56666766654320
Q ss_pred -------CCeEEEEcCCCCCcCCCCCcHHHHHHHHHHHHHH
Q 008873 515 -------KPYEILIFPDERHMPRRHRDRIYMEERIWEFIER 548 (550)
Q Consensus 515 -------~~~~~~~~p~~~H~~~~~~~~~~~~~~~~~fl~~ 548 (550)
..++++++|++||.. ..++...+.+.+.+||.+
T Consensus 1599 ~~~~~~~~~a~lvvI~~aGH~~-~lE~Pe~f~~~I~~FL~~ 1638 (1655)
T PLN02980 1599 SGNDKGKEIIEIVEIPNCGHAV-HLENPLPVIRALRKFLTR 1638 (1655)
T ss_pred ccccccccceEEEEECCCCCch-HHHCHHHHHHHHHHHHHh
Confidence 126899999999987 457788899999999975
No 119
>PF00756 Esterase: Putative esterase; InterPro: IPR000801 This family contains several seemingly unrelated proteins, including human esterase D; mycobacterial antigen 85, which is responsible for the high affinity of mycobacteria to fibronectin; Corynebacterium glutamicum major secreted protein PS1; and hypothetical proteins from Escherichia coli, yeast, mycobacteria and Haemophilus influenzae.; PDB: 3LS2_A 1VA5_B 1DQZ_B 3HRH_A 1DQY_A 2GZR_A 2GZS_A 3GFF_A 1R88_A 3E4D_D ....
Probab=99.43 E-value=2.4e-13 Score=127.39 Aligned_cols=219 Identities=16% Similarity=0.136 Sum_probs=125.4
Q ss_pred CcEEEEEEEcCCCCCCCCCCceEEEEEcCC-CCceeecccccccchhHhHHHHhCC----cEEEEECCCCCCCCchhhHH
Q 008873 308 GTVLYGALYKPDESRYGPPPYKTLISVYGG-PCVQLVCDSWINTVDMRAQYLRSKG----ILVWKLDNRGTARRGLKFEA 382 (550)
Q Consensus 308 g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg-~~~~~~~~~~~~~~~~~~~~l~~~G----~~vv~~d~rG~g~~~~~~~~ 382 (550)
|..+..++|.|++. ...+++|||+++||. ... ..+ ......+.+.+.| .++|+++..+.......+..
T Consensus 5 g~~~~~~VylP~~y-~~~~~~PvlylldG~~~~~----~~~--~~~~~~~~~~~~~~~~~~iiV~i~~~~~~~~~~~~~~ 77 (251)
T PF00756_consen 5 GRDRRVWVYLPPGY-DPSKPYPVLYLLDGQSGWF----RNG--NAQEALDRLIAEGKIPPMIIVVIPNGDNSRFYTSWYL 77 (251)
T ss_dssp TEEEEEEEEECTTG-GTTTTEEEEEEESHTTHHH----HHH--HHHHHHHHHHHHHTSEEEEEEEEESSSTSSTTSBTTS
T ss_pred CCeEEEEEEECCCC-CCCCCCEEEEEccCCcccc----ccc--hHHHHHHHHHHhCCCCceEEEEEeccccccccccccc
Confidence 56788999999986 344899999999994 111 111 1111223333433 55666665444311100000
Q ss_pred ------HHhhccCCCchHHH--HHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCcccccc
Q 008873 383 ------SIKHNCGRIDAEDQ--LTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDT 454 (550)
Q Consensus 383 ------~~~~~~~~~~~~D~--~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 454 (550)
......+...+.+. .+.+.++.++..+++.+.+|+|+||||+.|++++.++|+.|.++++.+|..+.. ..
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~l~~el~p~i~~~~~~~~~~~~i~G~S~GG~~Al~~~l~~Pd~F~~~~~~S~~~~~~--~~ 155 (251)
T PF00756_consen 78 PAGSSRRADDSGGGDAYETFLTEELIPYIEANYRTDPDRRAIAGHSMGGYGALYLALRHPDLFGAVIAFSGALDPS--PS 155 (251)
T ss_dssp SBCTTCBCTSTTTHHHHHHHHHTHHHHHHHHHSSEEECCEEEEEETHHHHHHHHHHHHSTTTESEEEEESEESETT--HC
T ss_pred ccccccccccCCCCcccceehhccchhHHHHhcccccceeEEeccCCCcHHHHHHHHhCccccccccccCcccccc--cc
Confidence 00000000012222 255667777766676669999999999999999999999999999999886543 11
Q ss_pred hhhhhccCCCCCCccccccCChhhhh-----hcCCCcEEEEecCCCCCCC----------hHHHHHHHHHHHHcCCCeEE
Q 008873 455 FYTEKYMGLPSEDPVGYEYSSVMHHV-----HKMKGKLLLVHGMIDENVH----------FRHTARLINALVAARKPYEI 519 (550)
Q Consensus 455 ~~~~~~~g~~~~~~~~~~~~~~~~~~-----~~i~~P~lii~G~~D~~v~----------~~~~~~~~~~l~~~~~~~~~ 519 (550)
.|.. .+.+.|...++.... ..-..++++..|+.|.... .....++.+.|+..+.+..+
T Consensus 156 ~w~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~ 228 (251)
T PF00756_consen 156 LWGP-------SDDEAWKENDPFDLIKALSQKKKPLRIYLDVGTKDEFGGWEDSAQILQFLANNRELAQLLKAKGIPHTY 228 (251)
T ss_dssp HHHH-------STCGHHGGCHHHHHHHHHHHTTSEEEEEEEEETTSTTHHCSHHHHHHHHHHHHHHHHHHCCCEECTTES
T ss_pred ccCc-------CCcHHhhhccHHHHhhhhhcccCCCeEEEEeCCCCcccccccCHHHHHHHHHhHhhHHHHHHcCCCceE
Confidence 1111 112233333443333 2223578999999998332 12334444455556788888
Q ss_pred EEcCCCCCcCCCCCcHHHHHHHHHHHH
Q 008873 520 LIFPDERHMPRRHRDRIYMEERIWEFI 546 (550)
Q Consensus 520 ~~~p~~~H~~~~~~~~~~~~~~~~~fl 546 (550)
..++ ++|.... ....+...+.||
T Consensus 229 ~~~~-G~H~~~~---W~~~l~~~L~~~ 251 (251)
T PF00756_consen 229 HVFP-GGHDWAY---WRRRLPDALPWM 251 (251)
T ss_dssp EEEH-SESSHHH---HHHHHHHHHHHH
T ss_pred EEec-Cccchhh---HHHHHHHHHhhC
Confidence 8888 4676422 333444455543
No 120
>TIGR01838 PHA_synth_I poly(R)-hydroxyalkanoic acid synthase, class I. This model represents the class I subfamily of poly(R)-hydroxyalkanoate synthases, which polymerizes hydroxyacyl-CoAs with three to five carbons in the hydroxyacyl backbone into aliphatic esters termed poly(R)-hydroxyalkanoic acids. These polymers accumulate as carbon and energy storage inclusions in many species and can amount to 90 percent of the dry weight of cell.
Probab=99.41 E-value=1.7e-11 Score=123.76 Aligned_cols=210 Identities=14% Similarity=0.132 Sum_probs=128.8
Q ss_pred EEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCchh
Q 008873 300 IVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLK 379 (550)
Q Consensus 300 ~~~~~~~~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~~ 379 (550)
.|.++. ..+..+.|.|.... ...+.||++||......+.+. . .-+.+.++|+++||.|+++|+||.|.+...
T Consensus 166 ~VV~~~---~~~eLi~Y~P~t~~---~~~~PlLiVp~~i~k~yilDL-~-p~~Slv~~L~~qGf~V~~iDwrgpg~s~~~ 237 (532)
T TIGR01838 166 AVVFEN---ELFQLIQYEPTTET---VHKTPLLIVPPWINKYYILDL-R-PQNSLVRWLVEQGHTVFVISWRNPDASQAD 237 (532)
T ss_pred eEEEEC---CcEEEEEeCCCCCc---CCCCcEEEECcccccceeeec-c-cchHHHHHHHHCCcEEEEEECCCCCccccc
Confidence 455544 33566777776531 123445668985444332221 1 123468899999999999999998865432
Q ss_pred hHHHHhhccCCCchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHH----HHhhC-CCeeEEEEEcCCcCCcccccc
Q 008873 380 FEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAI----TLARF-PDVFQCAVSGAPVTSWDGYDT 454 (550)
Q Consensus 380 ~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~----~~~~~-~~~~~~~v~~~~~~~~~~~~~ 454 (550)
+. +.....+++.++++++.+.- +.+++.++|||+||.+++. ++..+ ++++++++..+...|+.....
T Consensus 238 ~~------~ddY~~~~i~~al~~v~~~~--g~~kv~lvG~cmGGtl~a~ala~~aa~~~~~rv~slvll~t~~Df~~~G~ 309 (532)
T TIGR01838 238 KT------FDDYIRDGVIAALEVVEAIT--GEKQVNCVGYCIGGTLLSTALAYLAARGDDKRIKSATFFTTLLDFSDPGE 309 (532)
T ss_pred CC------hhhhHHHHHHHHHHHHHHhc--CCCCeEEEEECcCcHHHHHHHHHHHHhCCCCccceEEEEecCcCCCCcch
Confidence 21 11223456888888887653 5678999999999998632 34444 778898888877666432100
Q ss_pred ----------------------------------------h---hhhhcc-CCCC--CCc--------------------
Q 008873 455 ----------------------------------------F---YTEKYM-GLPS--EDP-------------------- 468 (550)
Q Consensus 455 ----------------------------------------~---~~~~~~-g~~~--~~~-------------------- 468 (550)
. +...|+ |... .+.
T Consensus 310 l~~f~~~~~~~~~e~~~~~~G~lpg~~m~~~F~~lrp~~l~w~~~v~~yl~g~~~~~fdll~Wn~D~t~lP~~~~~~~lr 389 (532)
T TIGR01838 310 LGVFVDEEIVAGIERQNGGGGYLDGRQMAVTFSLLRENDLIWNYYVDNYLKGKSPVPFDLLFWNSDSTNLPGKMHNFYLR 389 (532)
T ss_pred hhhhcCchhHHHHHHHHHhcCCCCHHHHHHHHHhcChhhHHHHHHHHHHhcCCCccchhHHHHhccCccchHHHHHHHHH
Confidence 0 001111 1110 000
Q ss_pred cccccCC----------hhhhhhcCCCcEEEEecCCCCCCChHHHHHHHHHHHHcCCCeEEEEcCCCCCcC
Q 008873 469 VGYEYSS----------VMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMP 529 (550)
Q Consensus 469 ~~~~~~~----------~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p~~~H~~ 529 (550)
..|.++. ....+.+|++|+|+++|+.|.++|+..+..+.+.+ + ..+.++++++||..
T Consensus 390 ~ly~~N~L~~G~~~v~g~~~dL~~I~vPvLvV~G~~D~IvP~~sa~~l~~~i---~-~~~~~vL~~sGHi~ 456 (532)
T TIGR01838 390 NLYLQNALTTGGLEVCGVRLDLSKVKVPVYIIATREDHIAPWQSAYRGAALL---G-GPKTFVLGESGHIA 456 (532)
T ss_pred HHHhcCCCcCCeeEECCEecchhhCCCCEEEEeeCCCCcCCHHHHHHHHHHC---C-CCEEEEECCCCCch
Confidence 1111111 12356778899999999999999999888776654 3 34667889999974
No 121
>KOG3101 consensus Esterase D [General function prediction only]
Probab=99.41 E-value=8.1e-13 Score=111.06 Aligned_cols=215 Identities=16% Similarity=0.183 Sum_probs=129.7
Q ss_pred CcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEEC--CCCCCCCch-------
Q 008873 308 GTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLD--NRGTARRGL------- 378 (550)
Q Consensus 308 g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d--~rG~g~~~~------- 378 (550)
+..+..-+|.|+... ..++.|+|+++-|-.-.. +.|... ..+.+....+|++||.|| .||..-.|+
T Consensus 25 ~c~Mtf~vylPp~a~-~~k~~P~lf~LSGLTCT~---~Nfi~K-sg~qq~As~hgl~vV~PDTSPRG~~v~g~~eswDFG 99 (283)
T KOG3101|consen 25 KCSMTFGVYLPPDAP-RGKRCPVLFYLSGLTCTH---ENFIEK-SGFQQQASKHGLAVVAPDTSPRGVEVAGDDESWDFG 99 (283)
T ss_pred ccceEEEEecCCCcc-cCCcCceEEEecCCcccc---hhhHhh-hhHHHhHhhcCeEEECCCCCCCccccCCCccccccc
Confidence 456777888997763 336799999999853321 222111 123556668999999999 455321111
Q ss_pred ---hh-HHHHhhccCC--CchHHHHHHHHHHHH--cCCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCcc
Q 008873 379 ---KF-EASIKHNCGR--IDAEDQLTGAEWLIK--QGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWD 450 (550)
Q Consensus 379 ---~~-~~~~~~~~~~--~~~~D~~~~~~~l~~--~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~ 450 (550)
-| .++....|.. .++.-+..-+-.++. .-.+|+.+++|.||||||+-|+....++|.+++.+-+.+|+.+..
T Consensus 100 ~GAGFYvnAt~epw~~~yrMYdYv~kELp~~l~~~~~pld~~k~~IfGHSMGGhGAl~~~Lkn~~kykSvSAFAPI~NP~ 179 (283)
T KOG3101|consen 100 QGAGFYVNATQEPWAKHYRMYDYVVKELPQLLNSANVPLDPLKVGIFGHSMGGHGALTIYLKNPSKYKSVSAFAPICNPI 179 (283)
T ss_pred CCceeEEecccchHhhhhhHHHHHHHHHHHHhccccccccchhcceeccccCCCceEEEEEcCcccccceeccccccCcc
Confidence 11 1111111110 011111111111221 134899999999999999999999999999999999999998754
Q ss_pred ccc--chhhhhccCCCCCCccccccCChhhhhhcC---CCcEEEEecCCCCCCCh-HHHHHHHHHHHHcC-CCeEEEEcC
Q 008873 451 GYD--TFYTEKYMGLPSEDPVGYEYSSVMHHVHKM---KGKLLLVHGMIDENVHF-RHTARLINALVAAR-KPYEILIFP 523 (550)
Q Consensus 451 ~~~--~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i---~~P~lii~G~~D~~v~~-~~~~~~~~~l~~~~-~~~~~~~~p 523 (550)
.-. ...-..|+|. +...|...++...+++. ..-+||-+|..|...+- --...+.++.+... .++.+..-+
T Consensus 180 ~cpWGqKAf~gYLG~---~ka~W~~yDat~lik~y~~~~~~ilIdqG~~D~Fl~~qLlPe~l~~a~~~~~~~~v~~r~~~ 256 (283)
T KOG3101|consen 180 NCPWGQKAFTGYLGD---NKAQWEAYDATHLIKNYRGVGDDILIDQGAADNFLAEQLLPENLLEACKATWQAPVVFRLQE 256 (283)
T ss_pred cCcchHHHhhcccCC---ChHHHhhcchHHHHHhcCCCCccEEEecCccchhhhhhcChHHHHHHhhccccccEEEEeec
Confidence 321 1112234444 55556666655555544 45689999999987651 11234444444332 678888889
Q ss_pred CCCCcCC
Q 008873 524 DERHMPR 530 (550)
Q Consensus 524 ~~~H~~~ 530 (550)
+-.|+..
T Consensus 257 gyDHSYy 263 (283)
T KOG3101|consen 257 GYDHSYY 263 (283)
T ss_pred CCCccee
Confidence 9999863
No 122
>KOG4667 consensus Predicted esterase [Lipid transport and metabolism]
Probab=99.40 E-value=9.1e-12 Score=105.42 Aligned_cols=212 Identities=16% Similarity=0.173 Sum_probs=137.2
Q ss_pred CCeEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCC
Q 008873 297 PPDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARR 376 (550)
Q Consensus 297 ~~~~~~~~~~~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~ 376 (550)
..+.+.++...+..+-+.+... +..-++|++||--.... . ......+..+++.||.++.+|++|.|.+
T Consensus 9 ~~~~ivi~n~~ne~lvg~lh~t-------gs~e~vvlcHGfrS~Kn---~--~~~~~vA~~~e~~gis~fRfDF~GnGeS 76 (269)
T KOG4667|consen 9 IAQKIVIPNSRNEKLVGLLHET-------GSTEIVVLCHGFRSHKN---A--IIMKNVAKALEKEGISAFRFDFSGNGES 76 (269)
T ss_pred eeeEEEeccCCCchhhcceecc-------CCceEEEEeeccccccc---h--HHHHHHHHHHHhcCceEEEEEecCCCCc
Confidence 3455666666666665644432 23358899999432211 0 1123357778899999999999999988
Q ss_pred chhhHHHHhhccCCCchHHHHHHHHHHHHcCCCCCCc--eEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCccccc-
Q 008873 377 GLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGH--IGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYD- 453 (550)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~--i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~~~~- 453 (550)
...|.- -.+..+.+|+-..++++... +| -+|+|||-||-+++..+.++++ ++-.+..+|-.|....-
T Consensus 77 ~gsf~~----Gn~~~eadDL~sV~q~~s~~-----nr~v~vi~gHSkGg~Vvl~ya~K~~d-~~~viNcsGRydl~~~I~ 146 (269)
T KOG4667|consen 77 EGSFYY----GNYNTEADDLHSVIQYFSNS-----NRVVPVILGHSKGGDVVLLYASKYHD-IRNVINCSGRYDLKNGIN 146 (269)
T ss_pred CCcccc----CcccchHHHHHHHHHHhccC-----ceEEEEEEeecCccHHHHHHHHhhcC-chheEEcccccchhcchh
Confidence 765442 22345679999999998653 33 3589999999999999999877 46666666665543221
Q ss_pred ----chhhhhcc--C---CCC---CCccccccC--------ChhhhhhcC--CCcEEEEecCCCCCCChHHHHHHHHHHH
Q 008873 454 ----TFYTEKYM--G---LPS---EDPVGYEYS--------SVMHHVHKM--KGKLLLVHGMIDENVHFRHTARLINALV 511 (550)
Q Consensus 454 ----~~~~~~~~--g---~~~---~~~~~~~~~--------~~~~~~~~i--~~P~lii~G~~D~~v~~~~~~~~~~~l~ 511 (550)
..+.++.. | .+. .....+... +......+| +||+|-+||..|.+||.+.+.++++.+.
T Consensus 147 eRlg~~~l~~ike~Gfid~~~rkG~y~~rvt~eSlmdrLntd~h~aclkId~~C~VLTvhGs~D~IVPve~AkefAk~i~ 226 (269)
T KOG4667|consen 147 ERLGEDYLERIKEQGFIDVGPRKGKYGYRVTEESLMDRLNTDIHEACLKIDKQCRVLTVHGSEDEIVPVEDAKEFAKIIP 226 (269)
T ss_pred hhhcccHHHHHHhCCceecCcccCCcCceecHHHHHHHHhchhhhhhcCcCccCceEEEeccCCceeechhHHHHHHhcc
Confidence 11222111 1 111 011111111 111222334 4899999999999999999999988763
Q ss_pred HcCCCeEEEEcCCCCCcCCCCCc
Q 008873 512 AARKPYEILIFPDERHMPRRHRD 534 (550)
Q Consensus 512 ~~~~~~~~~~~p~~~H~~~~~~~ 534 (550)
..++.++|++.|.+...+.
T Consensus 227 ----nH~L~iIEgADHnyt~~q~ 245 (269)
T KOG4667|consen 227 ----NHKLEIIEGADHNYTGHQS 245 (269)
T ss_pred ----CCceEEecCCCcCccchhh
Confidence 3789999999999866444
No 123
>PRK05855 short chain dehydrogenase; Validated
Probab=99.39 E-value=5.2e-12 Score=133.96 Aligned_cols=214 Identities=15% Similarity=0.045 Sum_probs=120.2
Q ss_pred cCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCchhhHHH-
Q 008873 305 ANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEAS- 383 (550)
Q Consensus 305 ~~~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~~~~~~- 383 (550)
..+|..+++..+.+. +.|.||++||.+.+.. .|......| ..||.|+++|+||+|.+.......
T Consensus 9 ~~~g~~l~~~~~g~~-------~~~~ivllHG~~~~~~-------~w~~~~~~L-~~~~~Vi~~D~~G~G~S~~~~~~~~ 73 (582)
T PRK05855 9 SSDGVRLAVYEWGDP-------DRPTVVLVHGYPDNHE-------VWDGVAPLL-ADRFRVVAYDVRGAGRSSAPKRTAA 73 (582)
T ss_pred eeCCEEEEEEEcCCC-------CCCeEEEEcCCCchHH-------HHHHHHHHh-hcceEEEEecCCCCCCCCCCCcccc
Confidence 357888887766432 2478999999765532 233455666 678999999999999875321110
Q ss_pred -HhhccCCCchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhC--CCeeEEEEEcCCc-CCcc---------
Q 008873 384 -IKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARF--PDVFQCAVSGAPV-TSWD--------- 450 (550)
Q Consensus 384 -~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~--~~~~~~~v~~~~~-~~~~--------- 450 (550)
.... ..+|+.++++.+ + . ..++.|+||||||.+++.++... +.++..++..++. .+..
T Consensus 74 ~~~~~----~a~dl~~~i~~l---~-~-~~~~~lvGhS~Gg~~a~~~a~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 144 (582)
T PRK05855 74 YTLAR----LADDFAAVIDAV---S-P-DRPVHLLAHDWGSIQGWEAVTRPRAAGRIASFTSVSGPSLDHVGFWLRSGLR 144 (582)
T ss_pred cCHHH----HHHHHHHHHHHh---C-C-CCcEEEEecChHHHHHHHHHhCccchhhhhhheeccCCchHHHHHHHhhccc
Confidence 0111 134444444443 1 1 23499999999999998777652 3333333332211 1000
Q ss_pred -----cccch----hh----------------------h---hcc----CCCCCC-------------cccccc----CC
Q 008873 451 -----GYDTF----YT----------------------E---KYM----GLPSED-------------PVGYEY----SS 475 (550)
Q Consensus 451 -----~~~~~----~~----------------------~---~~~----g~~~~~-------------~~~~~~----~~ 475 (550)
..... .. . ... ..+... ...+.. ..
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (582)
T PRK05855 145 RPTPRRLARALGQLLRSWYIYLFHLPVLPELLWRLGLGRAWPRLLRRVEGTPVDPIPTQTTLSDGAHGVKLYRANMIRSL 224 (582)
T ss_pred ccchhhhhHHHHHHhhhHHHHHHhCCCCcHHHhccchhhHHHHhhhhccCCCcchhhhhhhhccccchHHHHHhhhhhhh
Confidence 00000 00 0 000 000000 000000 00
Q ss_pred hhhhhhcCCCcEEEEecCCCCCCChHHHHHHHHHHHHcCCCeEEEEcCCCCCcCCCCCcHHHHHHHHHHHHHH
Q 008873 476 VMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIER 548 (550)
Q Consensus 476 ~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p~~~H~~~~~~~~~~~~~~~~~fl~~ 548 (550)
.......+++|+|+++|++|..+|+.....+.+.+ ...++++++ ++|.. ..++...+.+.+.+||.+
T Consensus 225 ~~~~~~~~~~P~lii~G~~D~~v~~~~~~~~~~~~----~~~~~~~~~-~gH~~-~~e~p~~~~~~i~~fl~~ 291 (582)
T PRK05855 225 SRPRERYTDVPVQLIVPTGDPYVRPALYDDLSRWV----PRLWRREIK-AGHWL-PMSHPQVLAAAVAEFVDA 291 (582)
T ss_pred ccCccCCccCceEEEEeCCCcccCHHHhccccccC----CcceEEEcc-CCCcc-hhhChhHHHHHHHHHHHh
Confidence 00112347899999999999999988777665433 245666666 58987 356677888889999875
No 124
>PF12740 Chlorophyllase2: Chlorophyllase enzyme; InterPro: IPR010821 This family consists of several chlorophyllase proteins (3.1.1.14 from EC). Chlorophyllase (Chlase) is the first enzyme involved in chlorophyll degradation and catalyses the hydrolysis of the ester bond to yield chlorophyllide and phytol [, , ].; GO: 0047746 chlorophyllase activity, 0015996 chlorophyll catabolic process
Probab=99.39 E-value=1.7e-11 Score=110.35 Aligned_cols=178 Identities=16% Similarity=0.180 Sum_probs=118.4
Q ss_pred EEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCchhhHHHHhhccCCC
Q 008873 312 YGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRI 391 (550)
Q Consensus 312 ~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~~~~~~~~~~~~~~ 391 (550)
...++.|... +.|||||++||-.- ...| +..+.+.++++||+||.+|.....+.. ...
T Consensus 5 ~l~v~~P~~~----g~yPVv~f~~G~~~----~~s~---Ys~ll~hvAShGyIVV~~d~~~~~~~~-----------~~~ 62 (259)
T PF12740_consen 5 PLLVYYPSSA----GTYPVVLFLHGFLL----INSW---YSQLLEHVASHGYIVVAPDLYSIGGPD-----------DTD 62 (259)
T ss_pred CeEEEecCCC----CCcCEEEEeCCcCC----CHHH---HHHHHHHHHhCceEEEEecccccCCCC-----------cch
Confidence 3467788764 68999999999542 2222 444678899999999999966533221 122
Q ss_pred chHHHHHHHHHHHHc--C------CCCCCceEEEEechhHHHHHHHHhhC-----CCeeEEEEEcCCcCCcccccchhhh
Q 008873 392 DAEDQLTGAEWLIKQ--G------LAKVGHIGLYGWSYGGYLSAITLARF-----PDVFQCAVSGAPVTSWDGYDTFYTE 458 (550)
Q Consensus 392 ~~~D~~~~~~~l~~~--~------~~d~~~i~i~G~S~GG~~a~~~~~~~-----~~~~~~~v~~~~~~~~~~~~~~~~~ 458 (550)
+.++..+.++|+.+. . .+|-+||+|.|||.||.++..++..+ +.+|++++.+.|+........
T Consensus 63 ~~~~~~~vi~Wl~~~L~~~l~~~v~~D~s~l~l~GHSrGGk~Af~~al~~~~~~~~~~~~ali~lDPVdG~~~~~~---- 138 (259)
T PF12740_consen 63 EVASAAEVIDWLAKGLESKLPLGVKPDFSKLALAGHSRGGKVAFAMALGNASSSLDLRFSALILLDPVDGMSKGSQ---- 138 (259)
T ss_pred hHHHHHHHHHHHHhcchhhccccccccccceEEeeeCCCCHHHHHHHhhhcccccccceeEEEEeccccccccccC----
Confidence 367788888888763 1 25889999999999999999998876 458999999999853211100
Q ss_pred hccCCCCCCccccccCChhhhhhcCCCcEEEEecCCCCC--------CCh--HHHHHHHHHHHHcCCCeEEEEcCCCCCc
Q 008873 459 KYMGLPSEDPVGYEYSSVMHHVHKMKGKLLLVHGMIDEN--------VHF--RHTARLINALVAARKPYEILIFPDERHM 528 (550)
Q Consensus 459 ~~~g~~~~~~~~~~~~~~~~~~~~i~~P~lii~G~~D~~--------v~~--~~~~~~~~~l~~~~~~~~~~~~p~~~H~ 528 (550)
..+..+.. . ...-+...|+|++-.+-... +-+ .+-.+|++++ ..+.-.++.++.||.
T Consensus 139 -------~~P~v~~~-~--p~s~~~~~P~lviGtGLg~~~~~~~~~~CaP~g~n~~~Ff~~~---~~p~~~~v~~~~GH~ 205 (259)
T PF12740_consen 139 -------TEPPVLTY-T--PQSFDFSMPALVIGTGLGGEPRNPLFPPCAPAGVNYREFFDEC---KPPSWHFVAKDYGHM 205 (259)
T ss_pred -------CCCccccC-c--ccccCCCCCeEEEecccCcccccccCCCCCCCCCCHHHHHHhc---CCCEEEEEeCCCCch
Confidence 00111110 0 11122347999987655532 222 3556777766 567777888999996
No 125
>KOG2564 consensus Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold [General function prediction only]
Probab=99.34 E-value=1.4e-11 Score=108.70 Aligned_cols=127 Identities=22% Similarity=0.173 Sum_probs=86.3
Q ss_pred CCeEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHH-hCCcEEEEECCCCCCC
Q 008873 297 PPDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLR-SKGILVWKLDNRGTAR 375 (550)
Q Consensus 297 ~~~~~~~~~~~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~-~~G~~vv~~d~rG~g~ 375 (550)
+.+.+.++..++ ++..++-.|.. ..-|++++.|||+.+.. .|..+++.+. .....|+++|.||+|.
T Consensus 49 ekedv~i~~~~~-t~n~Y~t~~~~-----t~gpil~l~HG~G~S~L-------SfA~~a~el~s~~~~r~~a~DlRgHGe 115 (343)
T KOG2564|consen 49 EKEDVSIDGSDL-TFNVYLTLPSA-----TEGPILLLLHGGGSSAL-------SFAIFASELKSKIRCRCLALDLRGHGE 115 (343)
T ss_pred cccccccCCCcc-eEEEEEecCCC-----CCccEEEEeecCcccch-------hHHHHHHHHHhhcceeEEEeeccccCc
Confidence 446677766554 67777777753 34599999999877754 3444566555 4567889999999998
Q ss_pred CchhhHHHHhhccCCCchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhC--CCeeEEEEEc
Q 008873 376 RGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARF--PDVFQCAVSG 443 (550)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~--~~~~~~~v~~ 443 (550)
+--+-+..+..+ -..+|+.+.++++-.. ++.+|+|+||||||.++.+.+... |. ..+++.+
T Consensus 116 Tk~~~e~dlS~e---T~~KD~~~~i~~~fge---~~~~iilVGHSmGGaIav~~a~~k~lps-l~Gl~vi 178 (343)
T KOG2564|consen 116 TKVENEDDLSLE---TMSKDFGAVIKELFGE---LPPQIILVGHSMGGAIAVHTAASKTLPS-LAGLVVI 178 (343)
T ss_pred cccCChhhcCHH---HHHHHHHHHHHHHhcc---CCCceEEEeccccchhhhhhhhhhhchh-hhceEEE
Confidence 755444332211 1267888888777644 346799999999999998887643 44 3444443
No 126
>PF03583 LIP: Secretory lipase ; InterPro: IPR005152 This entry represents a family of secreted lipases. Family members include the LIP lipases from Candida albicans, which are expressed and secreted during the infection cycle of these pathogens [].; GO: 0004806 triglyceride lipase activity, 0016042 lipid catabolic process
Probab=99.34 E-value=8.3e-12 Score=117.84 Aligned_cols=186 Identities=17% Similarity=0.233 Sum_probs=115.7
Q ss_pred hHHHHhCCcEEEEECCCCCCCCchhhHHHHhhccCCCchHHHHHHHHHHHHc-CCCCCCceEEEEechhHHHHHHHHhh-
Q 008873 355 AQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQ-GLAKVGHIGLYGWSYGGYLSAITLAR- 432 (550)
Q Consensus 355 ~~~l~~~G~~vv~~d~rG~g~~~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~-~~~d~~~i~i~G~S~GG~~a~~~~~~- 432 (550)
...+.++||+|+++||.|-|. .|..... ......|.++|++.+... +.-...+++++|+|.||+.+++++..
T Consensus 19 l~~~L~~GyaVv~pDY~Glg~---~y~~~~~---~a~avLD~vRAA~~~~~~~gl~~~~~v~l~GySqGG~Aa~~AA~l~ 92 (290)
T PF03583_consen 19 LAAWLARGYAVVAPDYEGLGT---PYLNGRS---EAYAVLDAVRAARNLPPKLGLSPSSRVALWGYSQGGQAALWAAELA 92 (290)
T ss_pred HHHHHHCCCEEEecCCCCCCC---cccCcHh---HHHHHHHHHHHHHhcccccCCCCCCCEEEEeeCccHHHHHHHHHHh
Confidence 556679999999999998875 3322111 112245555555555442 22234689999999999999887743
Q ss_pred ---CCCe---eEEEEEcCCcCCcccc------------------------cchh--hhh----------------cc---
Q 008873 433 ---FPDV---FQCAVSGAPVTSWDGY------------------------DTFY--TEK----------------YM--- 461 (550)
Q Consensus 433 ---~~~~---~~~~v~~~~~~~~~~~------------------------~~~~--~~~----------------~~--- 461 (550)
.|++ +.++++.+|+.|.... .... ... ..
T Consensus 93 ~~YApeL~~~l~Gaa~gg~~~dl~~~~~~~~~~~~~g~~~~~l~gl~~~yP~l~~~~~~~l~~~g~~~~~~~~~~c~~~~ 172 (290)
T PF03583_consen 93 PSYAPELNRDLVGAAAGGPPADLAALLRALNGGPFAGLVPYALLGLAAAYPELDELLDSYLTPEGRALLDDARTRCLADI 172 (290)
T ss_pred HHhCcccccceeEEeccCCccCHHHHHhccCCCccHhHHHHHHHHHHHhCccHHHHHHHHhhHHHHHHHHHHHhhhHHHH
Confidence 2554 7888888887764210 0000 000 00
Q ss_pred --CCCCCCc-----cccccC-C-----h----h--hhh---hc--CCCcEEEEecCCCCCCChHHHHHHHHHHHHcC-CC
Q 008873 462 --GLPSEDP-----VGYEYS-S-----V----M--HHV---HK--MKGKLLLVHGMIDENVHFRHTARLINALVAAR-KP 516 (550)
Q Consensus 462 --g~~~~~~-----~~~~~~-~-----~----~--~~~---~~--i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~-~~ 516 (550)
....... ..+... + . + ..+ .+ -+.|++|.||..|+.||+....+++++++++| .+
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~P~~Pv~i~~g~~D~vvP~~~~~~l~~~~c~~G~a~ 252 (290)
T PF03583_consen 173 VAEYAFQDLFTGDTRYFKPGADLLADPAFRRALAENSLGMGGDWTPTVPVLIYQGTADEVVPPADTDALVAKWCAAGGAD 252 (290)
T ss_pred HHHhhhccccccchhccCChhhhhhhHHHHHHHHHhhccccCCCCCCCCEEEEecCCCCCCChHHHHHHHHHHHHcCCCC
Confidence 0000000 000000 0 0 0 011 11 24799999999999999999999999999999 79
Q ss_pred eEEEEcCCCCCcCCCCCcHHHHHHHHHHHHHHhC
Q 008873 517 YEILIFPDERHMPRRHRDRIYMEERIWEFIERTL 550 (550)
Q Consensus 517 ~~~~~~p~~~H~~~~~~~~~~~~~~~~~fl~~~l 550 (550)
++++.++..+|...... .....++||...|
T Consensus 253 V~~~~~~~~~H~~~~~~----~~~~a~~Wl~~rf 282 (290)
T PF03583_consen 253 VEYVRYPGGGHLGAAFA----SAPDALAWLDDRF 282 (290)
T ss_pred EEEEecCCCChhhhhhc----CcHHHHHHHHHHH
Confidence 99999999999753222 2356778887653
No 127
>KOG2984 consensus Predicted hydrolase [General function prediction only]
Probab=99.33 E-value=1.8e-12 Score=108.31 Aligned_cols=217 Identities=16% Similarity=0.178 Sum_probs=130.1
Q ss_pred CCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCchhhHHHHhh
Q 008873 307 DGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKH 386 (550)
Q Consensus 307 ~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~~~~~~~~~ 386 (550)
+|.+|.+.-+-- ++ -.|+++.|.-++.. ..|.++. .+.....-+.||+.|.||.|.+-..-+.....
T Consensus 29 ng~ql~y~~~G~-------G~-~~iLlipGalGs~~--tDf~pql---~~l~k~l~~TivawDPpGYG~SrPP~Rkf~~~ 95 (277)
T KOG2984|consen 29 NGTQLGYCKYGH-------GP-NYILLIPGALGSYK--TDFPPQL---LSLFKPLQVTIVAWDPPGYGTSRPPERKFEVQ 95 (277)
T ss_pred cCceeeeeecCC-------CC-ceeEeccccccccc--ccCCHHH---HhcCCCCceEEEEECCCCCCCCCCCcccchHH
Confidence 456666654421 22 25666778555532 3444322 11222334999999999999875433322222
Q ss_pred ccCCCchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCccc-----cc-----chh
Q 008873 387 NCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDG-----YD-----TFY 456 (550)
Q Consensus 387 ~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~~-----~~-----~~~ 456 (550)
.+ .+|...|++-+... +.+++.|+|||-||..|+.+|+++++.+.-.+..++..-... +. ..|
T Consensus 96 ff----~~Da~~avdLM~aL---k~~~fsvlGWSdGgiTalivAak~~e~v~rmiiwga~ayvn~~~~ma~kgiRdv~kW 168 (277)
T KOG2984|consen 96 FF----MKDAEYAVDLMEAL---KLEPFSVLGWSDGGITALIVAAKGKEKVNRMIIWGAAAYVNHLGAMAFKGIRDVNKW 168 (277)
T ss_pred HH----HHhHHHHHHHHHHh---CCCCeeEeeecCCCeEEEEeeccChhhhhhheeecccceecchhHHHHhchHHHhhh
Confidence 22 46667777766554 457899999999999999999999987766665544321110 00 011
Q ss_pred hhhccCCCCCC---ccc----c----------c---c-CChhhhhhcCCCcEEEEecCCCCCCChHHHHHHHHHHHHcCC
Q 008873 457 TEKYMGLPSED---PVG----Y----------E---Y-SSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARK 515 (550)
Q Consensus 457 ~~~~~g~~~~~---~~~----~----------~---~-~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~ 515 (550)
.++- ..|.++ ++. | . . .-.-..+.++++|+||+||+.|+.++-.+..-+ ..+ ..
T Consensus 169 s~r~-R~P~e~~Yg~e~f~~~wa~wvD~v~qf~~~~dG~fCr~~lp~vkcPtli~hG~kDp~~~~~hv~fi-~~~---~~ 243 (277)
T KOG2984|consen 169 SARG-RQPYEDHYGPETFRTQWAAWVDVVDQFHSFCDGRFCRLVLPQVKCPTLIMHGGKDPFCGDPHVCFI-PVL---KS 243 (277)
T ss_pred hhhh-cchHHHhcCHHHHHHHHHHHHHHHHHHhhcCCCchHhhhcccccCCeeEeeCCcCCCCCCCCccch-hhh---cc
Confidence 1110 111110 000 0 0 0 012234678999999999999999885544322 222 34
Q ss_pred CeEEEEcCCCCCcCCCCCcHHHHHHHHHHHHHHh
Q 008873 516 PYEILIFPDERHMPRRHRDRIYMEERIWEFIERT 549 (550)
Q Consensus 516 ~~~~~~~p~~~H~~~~~~~~~~~~~~~~~fl~~~ 549 (550)
-.++.++|.+.|.+ .-...+++...+++||++.
T Consensus 244 ~a~~~~~peGkHn~-hLrya~eFnklv~dFl~~~ 276 (277)
T KOG2984|consen 244 LAKVEIHPEGKHNF-HLRYAKEFNKLVLDFLKST 276 (277)
T ss_pred cceEEEccCCCcce-eeechHHHHHHHHHHHhcc
Confidence 56889999999998 4456778889999999863
No 128
>PF03403 PAF-AH_p_II: Platelet-activating factor acetylhydrolase, isoform II; PDB: 3F98_B 3F97_B 3D59_A 3F96_A 3D5E_B 3F9C_A.
Probab=99.33 E-value=2.4e-11 Score=118.60 Aligned_cols=189 Identities=17% Similarity=0.173 Sum_probs=100.5
Q ss_pred CCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCC-CCC-----chhhHHHH-------h---hccC
Q 008873 326 PPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGT-ARR-----GLKFEASI-------K---HNCG 389 (550)
Q Consensus 326 ~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~-g~~-----~~~~~~~~-------~---~~~~ 389 (550)
.++|||||-||..+++. .+..++..||++||+|+++++|.. ... ...-.... . -.+.
T Consensus 98 ~~~PvvIFSHGlgg~R~-------~yS~~~~eLAS~GyVV~aieHrDgSa~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (379)
T PF03403_consen 98 GKFPVVIFSHGLGGSRT-------SYSAICGELASHGYVVAAIEHRDGSAPATYFMRDGSGAEVEPYVVEYLEEEWIPLR 170 (379)
T ss_dssp S-EEEEEEE--TT--TT-------TTHHHHHHHHHTT-EEEEE---SS-SSEEEE-SSHHHHHHT---------EEEE--
T ss_pred CCCCEEEEeCCCCcchh-------hHHHHHHHHHhCCeEEEEeccCCCceeEEEeccCCCccccccccccccccceeccc
Confidence 67999999999766654 345568899999999999999943 210 11000000 0 0000
Q ss_pred C---------------CchHHHHHHHHHHHHc--------------------CCCCCCceEEEEechhHHHHHHHHhhCC
Q 008873 390 R---------------IDAEDQLTGAEWLIKQ--------------------GLAKVGHIGLYGWSYGGYLSAITLARFP 434 (550)
Q Consensus 390 ~---------------~~~~D~~~~~~~l~~~--------------------~~~d~~~i~i~G~S~GG~~a~~~~~~~~ 434 (550)
. .-..|+..+++.|.+. +.+|.++|+++|||+||..++.++.+.
T Consensus 171 ~~~~~~~~~~R~~QL~~R~~Ei~~~l~~L~~i~~G~~~~~~l~~~~~l~~~~grlD~~~i~~~GHSFGGATa~~~l~~d- 249 (379)
T PF03403_consen 171 DFDPEEEFELRNAQLRQRVAEIQFVLDALEEINSGDPVENVLPSSFDLSQFKGRLDLSRIGLAGHSFGGATALQALRQD- 249 (379)
T ss_dssp ---GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-----SS--SS-GGGGTT-EEEEEEEEEEETHHHHHHHHHHHH--
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccccCCccCHHHHhhhcchhheeeeecCchHHHHHHHHhhc-
Confidence 0 0144566667666531 346788999999999999999998875
Q ss_pred CeeEEEEEcCCcCCcccccchhhhhccCCCCCCccccccCChhhhhhcCCCcEEEEecCCCCCCChHHHHHHHHHHHHcC
Q 008873 435 DVFQCAVSGAPVTSWDGYDTFYTEKYMGLPSEDPVGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAAR 514 (550)
Q Consensus 435 ~~~~~~v~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~ 514 (550)
.+|+|+|+..|..- |..+ ....+++.|+|+|+.+. .. ...+...+ +.+...+
T Consensus 250 ~r~~~~I~LD~W~~---------------Pl~~----------~~~~~i~~P~L~InSe~-f~-~~~~~~~~-~~~~~~~ 301 (379)
T PF03403_consen 250 TRFKAGILLDPWMF---------------PLGD----------EIYSKIPQPLLFINSES-FQ-WWENIFRM-KKVISNN 301 (379)
T ss_dssp TT--EEEEES---T---------------TS-G----------GGGGG--S-EEEEEETT-T---HHHHHHH-HTT--TT
T ss_pred cCcceEEEeCCccc---------------CCCc----------ccccCCCCCEEEEECcc-cC-ChhhHHHH-HHHhccC
Confidence 67899999876421 1110 11256788999998875 22 22222233 2344455
Q ss_pred CCeEEEEcCCCCCcC------CCC----------------CcHHHHHHHHHHHHHHhC
Q 008873 515 KPYEILIFPDERHMP------RRH----------------RDRIYMEERIWEFIERTL 550 (550)
Q Consensus 515 ~~~~~~~~p~~~H~~------~~~----------------~~~~~~~~~~~~fl~~~l 550 (550)
....++.+.+..|.- ..+ .......+.+++||++||
T Consensus 302 ~~~~~~ti~gt~H~s~sD~~ll~P~~l~~~~~~~g~~dp~~a~~i~~~~~l~FL~~~L 359 (379)
T PF03403_consen 302 KESRMLTIKGTAHLSFSDFPLLSPWLLGKFLGLKGSIDPERALRINNRASLAFLRRHL 359 (379)
T ss_dssp S-EEEEEETT--GGGGSGGGGTS-HHHHHHTTSS-SS-HHHHHHHHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCcCCCcchhhhhhHHHHHHHhccccCcCHHHHHHHHHHHHHHHHHHhc
Confidence 678899999999961 011 113445677899999875
No 129
>COG4757 Predicted alpha/beta hydrolase [General function prediction only]
Probab=99.33 E-value=1.9e-11 Score=104.78 Aligned_cols=229 Identities=17% Similarity=0.156 Sum_probs=143.1
Q ss_pred EEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCchhh
Q 008873 301 VQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKF 380 (550)
Q Consensus 301 ~~~~~~~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~~~ 380 (550)
..+...||..+.+.++...+. .+-.+.+-|+++... ..+..+++.++++||.|+++||||.|.+...-
T Consensus 8 ~~l~~~DG~~l~~~~~pA~~~------~~g~~~va~a~Gv~~------~fYRrfA~~a~~~Gf~Vlt~dyRG~g~S~p~~ 75 (281)
T COG4757 8 AHLPAPDGYSLPGQRFPADGK------ASGRLVVAGATGVGQ------YFYRRFAAAAAKAGFEVLTFDYRGIGQSRPAS 75 (281)
T ss_pred cccccCCCccCccccccCCCC------CCCcEEecccCCcch------hHhHHHHHHhhccCceEEEEecccccCCCccc
Confidence 567788999999998865543 233344556555422 13344578888999999999999999876543
Q ss_pred HHHHhhccCCCchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCC--cCCcccc------
Q 008873 381 EASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAP--VTSWDGY------ 452 (550)
Q Consensus 381 ~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~--~~~~~~~------ 452 (550)
.....-.+.+....|+-++++++.+.- ..-....+|||+||.+.-.+.. ++..-.+.+..++ ...|...
T Consensus 76 ~~~~~~~~~DwA~~D~~aal~~~~~~~--~~~P~y~vgHS~GGqa~gL~~~-~~k~~a~~vfG~gagwsg~m~~~~~l~~ 152 (281)
T COG4757 76 LSGSQWRYLDWARLDFPAALAALKKAL--PGHPLYFVGHSFGGQALGLLGQ-HPKYAAFAVFGSGAGWSGWMGLRERLGA 152 (281)
T ss_pred cccCccchhhhhhcchHHHHHHHHhhC--CCCceEEeeccccceeeccccc-CcccceeeEeccccccccchhhhhcccc
Confidence 332222233334788999999998742 2246789999999998765554 4532222222222 1111100
Q ss_pred --------------cchhhhhccCCCCCCc-------------cccccCCh-----hhhhhcCCCcEEEEecCCCCCCCh
Q 008873 453 --------------DTFYTEKYMGLPSEDP-------------VGYEYSSV-----MHHVHKMKGKLLLVHGMIDENVHF 500 (550)
Q Consensus 453 --------------~~~~~~~~~g~~~~~~-------------~~~~~~~~-----~~~~~~i~~P~lii~G~~D~~v~~ 500 (550)
......+.+|...+-+ ..|...+| ..-.+++++|++.+...+|+.+|+
T Consensus 153 ~~l~~lv~p~lt~w~g~~p~~l~G~G~d~p~~v~RdW~RwcR~p~y~fddp~~~~~~q~yaaVrtPi~~~~~~DD~w~P~ 232 (281)
T COG4757 153 VLLWNLVGPPLTFWKGYMPKDLLGLGSDLPGTVMRDWARWCRHPRYYFDDPAMRNYRQVYAAVRTPITFSRALDDPWAPP 232 (281)
T ss_pred eeeccccccchhhccccCcHhhcCCCccCcchHHHHHHHHhcCccccccChhHhHHHHHHHHhcCceeeeccCCCCcCCH
Confidence 0111222333332211 11111122 234677899999999999999999
Q ss_pred HHHHHHHHHHHHcCCCeEEEEcCCC----CCcCCCCCcHHHHHHHHHHHH
Q 008873 501 RHTARLINALVAARKPYEILIFPDE----RHMPRRHRDRIYMEERIWEFI 546 (550)
Q Consensus 501 ~~~~~~~~~l~~~~~~~~~~~~p~~----~H~~~~~~~~~~~~~~~~~fl 546 (550)
.....+.....+ .+.++..++.+ ||.-...+..+.+++++++||
T Consensus 233 As~d~f~~~y~n--Apl~~~~~~~~~~~lGH~gyfR~~~Ealwk~~L~w~ 280 (281)
T COG4757 233 ASRDAFASFYRN--APLEMRDLPRAEGPLGHMGYFREPFEALWKEMLGWF 280 (281)
T ss_pred HHHHHHHHhhhc--CcccceecCcccCcccchhhhccchHHHHHHHHHhh
Confidence 988888887654 46677777765 787544555578889999987
No 130
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.33 E-value=1.1e-10 Score=109.60 Aligned_cols=183 Identities=17% Similarity=0.166 Sum_probs=121.4
Q ss_pred EEEEEECCCCceEEEEcccCCCCCCCCCceeEEEEECCCCeEEEE-EEecCC--CceEEEEEECCCCceEEEEEeecCce
Q 008873 60 RLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQ-VLNRSQ--TKLKVLKFDIKTGQRKVILVEELDSW 136 (550)
Q Consensus 60 ~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~wspDg~~i~~-~~~r~~--~~~~l~~~~~~~g~~~~l~~~~~~~~ 136 (550)
.||.+++.+|+.++|+.. -+-+..+.+||||+.++| ...+.+ +..+||.++.++||+++||-. +.
T Consensus 60 dlWe~slk~g~~~ritS~---------lGVvnn~kf~pdGrkvaf~rv~~~ss~~taDly~v~~e~Ge~kRiTyf-Gr-- 127 (668)
T COG4946 60 DLWEYSLKDGKPLRITSG---------LGVVNNPKFSPDGRKVAFSRVMLGSSLQTADLYVVPSEDGEAKRITYF-GR-- 127 (668)
T ss_pred HHHHhhhccCCeeEEecc---------cceeccccCCCCCcEEEEEEEEecCCCccccEEEEeCCCCcEEEEEEe-cc--
Confidence 379999999999999664 346778999999998888 333332 456899999999999999975 22
Q ss_pred eeccCccccCCCCCccCCCc-EEEEEcc----CCccEEEEEeCCCceeecccccC----------------------eE-
Q 008873 137 VNLHDCFTPLDKGVTKYSGG-FIWASEK----TGFRHLYLHDINGTCLGPITEGD----------------------WM- 188 (550)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~-~~~~s~~----~g~~~l~~~~~~~~~~~~lT~~~----------------------~~- 188 (550)
.|.-+. +|++|+ ++..+|- ..+..||.++.+|.+..+|.-|. |-
T Consensus 128 -----~fT~Va---G~~~dg~iiV~TD~~tPF~q~~~lYkv~~dg~~~e~LnlGpathiv~~dg~ivigRntydLP~WK~ 199 (668)
T COG4946 128 -----RFTRVA---GWIPDGEIIVSTDFHTPFSQWTELYKVNVDGIKTEPLNLGPATHIVIKDGIIVIGRNTYDLPHWKG 199 (668)
T ss_pred -----ccceee---ccCCCCCEEEEeccCCCcccceeeeEEccCCceeeeccCCceeeEEEeCCEEEEccCcccCccccc
Confidence 122222 566766 5555553 23567787777665433332211 00
Q ss_pred ----EEEEEeEee---------------------cCCEEEEEEcCCCCceeEEEEEEeCCCCCCCCCCCeeeCCCCceEE
Q 008873 189 ----VEQIVGVNE---------------------ASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTNGKGKHV 243 (550)
Q Consensus 189 ----~~~~~~~s~---------------------dg~~l~f~~~~~~~~~~~l~~v~~~~~g~~~~~~~~~lt~~~~~~~ 243 (550)
..+..+.+. -|.++||.+..++. -+||.+++ +|+ ..++-|....+..
T Consensus 200 YkGGtrGklWis~d~g~tFeK~vdl~~~vS~PmIV~~RvYFlsD~eG~--GnlYSvdl--dGk----DlrrHTnFtdYY~ 271 (668)
T COG4946 200 YKGGTRGKLWISSDGGKTFEKFVDLDGNVSSPMIVGERVYFLSDHEGV--GNLYSVDL--DGK----DLRRHTNFTDYYP 271 (668)
T ss_pred ccCCccceEEEEecCCcceeeeeecCCCcCCceEEcceEEEEecccCc--cceEEecc--CCc----hhhhcCCchhccc
Confidence 001111111 24579999988775 68999999 775 4555555444444
Q ss_pred EEECCCCCEEEEeecCCCCCCEEEEEEcCCCc
Q 008873 244 AVLDHNMRNFVDFHDSLDSPPRILLCSLQDGS 275 (550)
Q Consensus 244 ~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~ 275 (550)
-..+.||+.++|...+ ++|++|.++.+
T Consensus 272 R~~nsDGkrIvFq~~G-----dIylydP~td~ 298 (668)
T COG4946 272 RNANSDGKRIVFQNAG-----DIYLYDPETDS 298 (668)
T ss_pred cccCCCCcEEEEecCC-----cEEEeCCCcCc
Confidence 4678899999998665 89999876554
No 131
>KOG4627 consensus Kynurenine formamidase [Amino acid transport and metabolism]
Probab=99.30 E-value=1.7e-11 Score=102.82 Aligned_cols=211 Identities=13% Similarity=0.090 Sum_probs=140.1
Q ss_pred hhhcCCCCCCeEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEE
Q 008873 289 RIKRLQLEPPDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKL 368 (550)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~ 368 (550)
.+.+...++.+.+.+-. .|. -...+|.|.. ..|++|++|||.+...-... .. ..+..+..+||.|+.+
T Consensus 36 ~Lkn~~i~r~e~l~Yg~-~g~-q~VDIwg~~~------~~klfIfIHGGYW~~g~rk~---cl-siv~~a~~~gY~vasv 103 (270)
T KOG4627|consen 36 ELKNKQIIRVEHLRYGE-GGR-QLVDIWGSTN------QAKLFIFIHGGYWQEGDRKM---CL-SIVGPAVRRGYRVASV 103 (270)
T ss_pred HhhhccccchhccccCC-CCc-eEEEEecCCC------CccEEEEEecchhhcCchhc---cc-chhhhhhhcCeEEEEe
Confidence 44455566667766644 332 3356667654 34899999998665432221 11 1255677899999999
Q ss_pred CCCCCCCCchhhHHHHhhccCCCchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhh-CCCeeEEEEEcCCcC
Q 008873 369 DNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLAR-FPDVFQCAVSGAPVT 447 (550)
Q Consensus 369 d~rG~g~~~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~-~~~~~~~~v~~~~~~ 447 (550)
+|--+.. +.... ..+.++...++|+.+... ....+.+.|||.|+++++.+.++ +..++.+++..+|+.
T Consensus 104 gY~l~~q-~htL~---------qt~~~~~~gv~filk~~~-n~k~l~~gGHSaGAHLa~qav~R~r~prI~gl~l~~GvY 172 (270)
T KOG4627|consen 104 GYNLCPQ-VHTLE---------QTMTQFTHGVNFILKYTE-NTKVLTFGGHSAGAHLAAQAVMRQRSPRIWGLILLCGVY 172 (270)
T ss_pred ccCcCcc-cccHH---------HHHHHHHHHHHHHHHhcc-cceeEEEcccchHHHHHHHHHHHhcCchHHHHHHHhhHh
Confidence 9864431 11111 126788999999988733 44568899999999999998886 356789999999987
Q ss_pred CcccccchhhhhccCCCCCCccccccCChhhhhhcCCCcEEEEecCCCCCCChHHHHHHHHHHHHcCCCeEEEEcCCCCC
Q 008873 448 SWDGYDTFYTEKYMGLPSEDPVGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERH 527 (550)
Q Consensus 448 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p~~~H 527 (550)
+.......-...-+|...++.+ .-...+.....++.|+|++.|+.|..--.+|.+.+...+.+ ..+..|++.+|
T Consensus 173 ~l~EL~~te~g~dlgLt~~~ae--~~Scdl~~~~~v~~~ilVv~~~~espklieQnrdf~~q~~~----a~~~~f~n~~h 246 (270)
T KOG4627|consen 173 DLRELSNTESGNDLGLTERNAE--SVSCDLWEYTDVTVWILVVAAEHESPKLIEQNRDFADQLRK----ASFTLFKNYDH 246 (270)
T ss_pred hHHHHhCCccccccCcccchhh--hcCccHHHhcCceeeeeEeeecccCcHHHHhhhhHHHHhhh----cceeecCCcch
Confidence 7643322111122233222221 11223556788899999999999998888999999988744 56788999999
Q ss_pred c
Q 008873 528 M 528 (550)
Q Consensus 528 ~ 528 (550)
.
T Consensus 247 y 247 (270)
T KOG4627|consen 247 Y 247 (270)
T ss_pred h
Confidence 6
No 132
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=99.24 E-value=8.7e-10 Score=108.28 Aligned_cols=228 Identities=17% Similarity=0.133 Sum_probs=130.8
Q ss_pred cceEEEcCCCCeEEEEEEeCCCCCeEEEeecCCCCCCCCCcccccCCCCCCCCCeEEEEEEECCCCceEEEEcccCCCC-
Q 008873 4 KTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQCGGTD- 82 (550)
Q Consensus 4 ~~~~~wSPdg~~lay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~- 82 (550)
.....|||||++|||++.+ .||+.++.+++.++|+.+....-
T Consensus 45 ~~~~~~sP~g~~~~~v~~~-------------------------------------nly~~~~~~~~~~~lT~dg~~~i~ 87 (353)
T PF00930_consen 45 LQDAKWSPDGKYIAFVRDN-------------------------------------NLYLRDLATGQETQLTTDGEPGIY 87 (353)
T ss_dssp BSEEEE-SSSTEEEEEETT-------------------------------------EEEEESSTTSEEEESES--TTTEE
T ss_pred cccceeecCCCeeEEEecC-------------------------------------ceEEEECCCCCeEEeccccceeEE
Confidence 4567899999999998643 47999999998888887541110
Q ss_pred --CCC-------CCceeEEEEECCCCeEEEEEEecCCC--------------------------------ceEEEEEECC
Q 008873 83 --QNY-------DEEYLARVNWMHGNILTAQVLNRSQT--------------------------------KLKVLKFDIK 121 (550)
Q Consensus 83 --~~~-------~~~~~~~~~wspDg~~i~~~~~r~~~--------------------------------~~~l~~~~~~ 121 (550)
..+ .+ ....+-|||||+.|+|..-.... ...|++++++
T Consensus 88 nG~~dwvyeEEv~~-~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~ 166 (353)
T PF00930_consen 88 NGVPDWVYEEEVFD-RRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLA 166 (353)
T ss_dssp ESB--HHHHHHTSS-SSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESS
T ss_pred cCccceeccccccc-cccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECC
Confidence 000 01 12346799999988876422221 2245555665
Q ss_pred CCceEEEEEeecCceeeccCccccCCCCCccCCCc--EEE-EEccC-CccEEEEEeCCCceeecccc---cCeE-EEEEE
Q 008873 122 TGQRKVILVEELDSWVNLHDCFTPLDKGVTKYSGG--FIW-ASEKT-GFRHLYLHDINGTCLGPITE---GDWM-VEQIV 193 (550)
Q Consensus 122 ~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~s~~~-g~~~l~~~~~~~~~~~~lT~---~~~~-~~~~~ 193 (550)
+++...+...... .+....+..+ .|.+++ +++ ..+|. ....|+++|..+++.+.+.. ..|. .....
T Consensus 167 ~~~~~~~~~~~~~--~~~~~yl~~v----~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~ 240 (353)
T PF00930_consen 167 SGKTTELDPPNSL--NPQDYYLTRV----GWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPP 240 (353)
T ss_dssp STCCCEE---HHH--HTSSEEEEEE----EEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEE
T ss_pred CCcEEEeeecccc--CCCccCcccc----eecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeeccc
Confidence 5554333221000 0000001111 344443 333 33443 34677888886665443332 2331 11122
Q ss_pred eEe-ecCCEEEEEEcCCCCceeEEEEEEeCCCCCCCCCCCeeeCCCCc-eEE-EEECCCCCEEEEeecCCC-CCCEEEEE
Q 008873 194 GVN-EASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTNGKG-KHV-AVLDHNMRNFVDFHDSLD-SPPRILLC 269 (550)
Q Consensus 194 ~~s-~dg~~l~f~~~~~~~~~~~l~~v~~~~~g~~~~~~~~~lt~~~~-~~~-~~~s~dg~~l~~~~s~~~-~p~~l~~~ 269 (550)
.+. ++++.+++.+.+++ ..|||.++. +++ .+++||.++. ... ..++++++.+.|+..... .-..||++
T Consensus 241 ~~~~~~~~~~l~~s~~~G--~~hly~~~~--~~~----~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v 312 (353)
T PF00930_consen 241 HFLGPDGNEFLWISERDG--YRHLYLYDL--DGG----KPRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRV 312 (353)
T ss_dssp EE-TTTSSEEEEEEETTS--SEEEEEEET--TSS----EEEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEE
T ss_pred ccccCCCCEEEEEEEcCC--CcEEEEEcc--ccc----ceeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEE
Confidence 233 78889999988666 489999998 554 5779998764 323 478899999999877632 33689999
Q ss_pred EcCCCceeEeccCC
Q 008873 270 SLQDGSLVLPLYEQ 283 (550)
Q Consensus 270 ~~~~g~~~~~l~~~ 283 (550)
++.++..++.|+..
T Consensus 313 ~~~~~~~~~~LT~~ 326 (353)
T PF00930_consen 313 SLDSGGEPKCLTCE 326 (353)
T ss_dssp ETTETTEEEESSTT
T ss_pred EeCCCCCeEeccCC
Confidence 99724457888875
No 133
>PF08538 DUF1749: Protein of unknown function (DUF1749); InterPro: IPR013744 This is a plant and fungal family of unknown function. This family contains many hypothetical proteins. ; PDB: 2Q0X_B.
Probab=99.24 E-value=6.8e-11 Score=108.53 Aligned_cols=207 Identities=21% Similarity=0.219 Sum_probs=81.5
Q ss_pred eEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCC-CCCchhhHHHHhhccCCCchHHHHHHHHHHHHcC
Q 008873 329 KTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGT-ARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQG 407 (550)
Q Consensus 329 P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~-g~~~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~ 407 (550)
-+|||+-|-...-. . .+-...+++.|...||.|+.+..+-+ .++|. ..+.. +.+|+..+++||....
T Consensus 34 ~~llfIGGLtDGl~-t---vpY~~~La~aL~~~~wsl~q~~LsSSy~G~G~---~SL~~-----D~~eI~~~v~ylr~~~ 101 (303)
T PF08538_consen 34 NALLFIGGLTDGLL-T---VPYLPDLAEALEETGWSLFQVQLSSSYSGWGT---SSLDR-----DVEEIAQLVEYLRSEK 101 (303)
T ss_dssp SEEEEE--TT--TT-----STCHHHHHHHHT-TT-EEEEE--GGGBTTS-S-----HHH-----HHHHHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCCC-C---CchHHHHHHHhccCCeEEEEEEecCccCCcCc---chhhh-----HHHHHHHHHHHHHHhh
Confidence 47888877222110 0 01123356667778999999998863 55552 33333 3899999999999873
Q ss_pred --CCCCCceEEEEechhHHHHHHHHhhCC-----CeeEEEEEcCCcCCcccccchhh------h------hcc--CCCCC
Q 008873 408 --LAKVGHIGLYGWSYGGYLSAITLARFP-----DVFQCAVSGAPVTSWDGYDTFYT------E------KYM--GLPSE 466 (550)
Q Consensus 408 --~~d~~~i~i~G~S~GG~~a~~~~~~~~-----~~~~~~v~~~~~~~~~~~~~~~~------~------~~~--g~~~~ 466 (550)
.-..++|+|+|||-|..-++.++.... ..+.++|+.+|+.|......... + ... |.+.+
T Consensus 102 ~g~~~~~kIVLmGHSTGcQdvl~Yl~~~~~~~~~~~VdG~ILQApVSDREa~~~~~~~~~~~~~~v~~A~~~i~~g~~~~ 181 (303)
T PF08538_consen 102 GGHFGREKIVLMGHSTGCQDVLHYLSSPNPSPSRPPVDGAILQAPVSDREAILNFLGEREAYEELVALAKELIAEGKGDE 181 (303)
T ss_dssp ------S-EEEEEECCHHHHHHHHHHH-TT---CCCEEEEEEEEE---TTSTTTSHHH---HHHHHHHHHHHHHCT-TT-
T ss_pred ccccCCccEEEEecCCCcHHHHHHHhccCccccccceEEEEEeCCCCChhHhhhcccchHHHHHHHHHHHHHHHcCCCCc
Confidence 135689999999999999999987642 56899999999998654322111 0 000 11110
Q ss_pred -------------Cc-cccccC-------------------ChhhhhhcCCCcEEEEecCCCCCCChHH-HHHHHHHHHH
Q 008873 467 -------------DP-VGYEYS-------------------SVMHHVHKMKGKLLLVHGMIDENVHFRH-TARLINALVA 512 (550)
Q Consensus 467 -------------~~-~~~~~~-------------------~~~~~~~~i~~P~lii~G~~D~~v~~~~-~~~~~~~l~~ 512 (550)
.+ ..++-. .....+.+++.|+|++.+++|+.||... -.++.++++.
T Consensus 182 ~lp~~~~~~~~~~~PiTA~Rf~SL~s~~gdDD~FSSDL~de~l~~tfG~v~~plLvl~Sg~DEyvP~~vdk~~Ll~rw~~ 261 (303)
T PF08538_consen 182 ILPREFTPLVFYDTPITAYRFLSLASPGGDDDYFSSDLSDERLKKTFGKVSKPLLVLYSGKDEYVPPWVDKEALLERWKA 261 (303)
T ss_dssp GG----GGTTT-SS---HHHHHT-S-SSHHHHTHHHHHTT-HHHHTGGG--S-EEEEEE--TT-----------------
T ss_pred eeeccccccccCCCcccHHHHHhccCCCCcccccCCCCCHHHHHHHhccCCCceEEEecCCCceeccccccccccccccc
Confidence 00 001100 1123466788899999999999999643 3455566654
Q ss_pred cCC----CeEEEEcCCCCCcCCCCCc---HHHHHHHHHHHHH
Q 008873 513 ARK----PYEILIFPDERHMPRRHRD---RIYMEERIWEFIE 547 (550)
Q Consensus 513 ~~~----~~~~~~~p~~~H~~~~~~~---~~~~~~~~~~fl~ 547 (550)
.-. ...-.++||++|.+..... .+.+.+++..||+
T Consensus 262 a~~~~~~s~~S~iI~GA~H~~~~~~~~~~~~~l~~rV~~fl~ 303 (303)
T PF08538_consen 262 ATNPKIWSPLSGIIPGASHNVSGPSQAEAREWLVERVVKFLK 303 (303)
T ss_dssp ------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccCC
Confidence 432 2235589999999865443 4467888888874
No 134
>PF00561 Abhydrolase_1: alpha/beta hydrolase fold A web page of Esterases and alpha/beta hydrolases.; InterPro: IPR000073 The alpha/beta hydrolase fold [] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices []. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. Esterase (EST) from Pseudomonas putida is a member of the alpha/beta hydrolase fold superfamily of enzymes []. In most of the family members the beta-strands are parallels, but some have an inversion of the first strands, which gives it an antiparallel orientation. The catalytic triad residues are presented on loops. One of these is the nucleophile elbow and is the most conserved feature of the fold. Some other members lack one or all of the catalytic residues. Some members are therefore inactive but others are involved in surface recognition. The ESTHER database [] gathers and annotates all the published information related to gene and protein sequences of this superfamily []. This entry represents fold-1 of alpha/beta hydrolase.; PDB: 2VAT_E 2VAX_C 2VAV_H 2PSJ_A 2PSH_B 2PSE_A 2PSF_A 2PSD_A 2EDA_A 1CIJ_A ....
Probab=99.21 E-value=2.8e-11 Score=111.73 Aligned_cols=157 Identities=17% Similarity=0.143 Sum_probs=105.4
Q ss_pred cEEEEECCCCCCCCchhhHHHHhhccCCCchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEE
Q 008873 363 ILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVS 442 (550)
Q Consensus 363 ~~vv~~d~rG~g~~~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~ 442 (550)
|.|+++|.||.|.+... ....+......|+.+.++.+.++-.+ +++.++||||||.+++.++.++|++++++++
T Consensus 1 f~vi~~d~rG~g~S~~~----~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~vG~S~Gg~~~~~~a~~~p~~v~~lvl 74 (230)
T PF00561_consen 1 FDVILFDLRGFGYSSPH----WDPDFPDYTTDDLAADLEALREALGI--KKINLVGHSMGGMLALEYAAQYPERVKKLVL 74 (230)
T ss_dssp EEEEEEECTTSTTSSSC----CGSGSCTHCHHHHHHHHHHHHHHHTT--SSEEEEEETHHHHHHHHHHHHSGGGEEEEEE
T ss_pred CEEEEEeCCCCCCCCCC----ccCCcccccHHHHHHHHHHHHHHhCC--CCeEEEEECCChHHHHHHHHHCchhhcCcEE
Confidence 68999999999987631 11223344578899999998886433 4599999999999999999999999999999
Q ss_pred cCCcCC------cccccc-h-----------------------hh------hhcc-------------CCCCCC------
Q 008873 443 GAPVTS------WDGYDT-F-----------------------YT------EKYM-------------GLPSED------ 467 (550)
Q Consensus 443 ~~~~~~------~~~~~~-~-----------------------~~------~~~~-------------g~~~~~------ 467 (550)
.+++.. ...... . .. .+.. ......
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (230)
T PF00561_consen 75 ISPPPDLPDGLWNRIWPRGNLQGQLLDNFFNFLSDPIKPLLGRWPKQFFAYDREFVEDFLKQFQSQQYARFAETDAFDNM 154 (230)
T ss_dssp ESESSHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHTCHHHHHHHH
T ss_pred EeeeccchhhhhHHHHhhhhhhhhHHHhhhccccccchhhhhhhhhheeeccCccccchhhccchhhhhHHHHHHHHhhh
Confidence 988510 000000 0 00 0000 000000
Q ss_pred ----ccccccCChhhhhhcCCCcEEEEecCCCCCCChHHHHHHHHHHHHcCCCeEEEEcCCCCCcC
Q 008873 468 ----PVGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMP 529 (550)
Q Consensus 468 ----~~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p~~~H~~ 529 (550)
...+...++.....++++|+|+++|+.|..+|+.....+.+.+ ...++++++++||..
T Consensus 155 ~~~~~~~~~~~~~~~~l~~i~~p~l~i~~~~D~~~p~~~~~~~~~~~----~~~~~~~~~~~GH~~ 216 (230)
T PF00561_consen 155 FWNALGYFSVWDPSPALSNIKVPTLIIWGEDDPLVPPESSEQLAKLI----PNSQLVLIEGSGHFA 216 (230)
T ss_dssp HHHHHHHHHHHHHHHHHTTTTSEEEEEEETTCSSSHHHHHHHHHHHS----TTEEEEEETTCCSTH
T ss_pred ccccccccccccccccccccCCCeEEEEeCCCCCCCHHHHHHHHHhc----CCCEEEECCCCChHH
Confidence 0001112223456678999999999999999998887755443 458999999999986
No 135
>PRK07868 acyl-CoA synthetase; Validated
Probab=99.21 E-value=5.1e-10 Score=124.63 Aligned_cols=230 Identities=13% Similarity=0.093 Sum_probs=133.2
Q ss_pred CeEEEEEcCCCcEEEEEEEcCCCCCCC-CCCceEEEEEcCCCCceeeccccccc-chhHhHHHHhCCcEEEEECCCCCCC
Q 008873 298 PDIVQIQANDGTVLYGALYKPDESRYG-PPPYKTLISVYGGPCVQLVCDSWINT-VDMRAQYLRSKGILVWKLDNRGTAR 375 (550)
Q Consensus 298 ~~~~~~~~~~g~~l~~~~~~P~~~~~~-~~~~P~vv~~hGg~~~~~~~~~~~~~-~~~~~~~l~~~G~~vv~~d~rG~g~ 375 (550)
+..+.++. ..+..+.|.|...... +...|.||++||.+..... |... -..+...|.++||.|+++|+. .
T Consensus 39 p~~vv~~~---~~~~l~~y~~~~~~~~~~~~~~plllvhg~~~~~~~---~d~~~~~s~v~~L~~~g~~v~~~d~G---~ 109 (994)
T PRK07868 39 PFQIVESV---PMYRLRRYFPPDNRPGQPPVGPPVLMVHPMMMSADM---WDVTRDDGAVGILHRAGLDPWVIDFG---S 109 (994)
T ss_pred CCcEEEEc---CcEEEEEeCCCCccccccCCCCcEEEECCCCCCccc---eecCCcccHHHHHHHCCCEEEEEcCC---C
Confidence 34455543 2355677777653110 1233678889997666542 2211 112368899999999999963 2
Q ss_pred CchhhHHHHhhccCCCchH----HHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhC-CCeeEEEEEcCCcCCcc
Q 008873 376 RGLKFEASIKHNCGRIDAE----DQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARF-PDVFQCAVSGAPVTSWD 450 (550)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~----D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~-~~~~~~~v~~~~~~~~~ 450 (550)
++.... .. ...+. ++.++++.+.+.. .+++.++||||||.+++.+++.+ +++++.+++.+...|+.
T Consensus 110 ~~~~~~-----~~-~~~l~~~i~~l~~~l~~v~~~~---~~~v~lvG~s~GG~~a~~~aa~~~~~~v~~lvl~~~~~d~~ 180 (994)
T PRK07868 110 PDKVEG-----GM-ERNLADHVVALSEAIDTVKDVT---GRDVHLVGYSQGGMFCYQAAAYRRSKDIASIVTFGSPVDTL 180 (994)
T ss_pred CChhHc-----Cc-cCCHHHHHHHHHHHHHHHHHhh---CCceEEEEEChhHHHHHHHHHhcCCCccceEEEEecccccC
Confidence 221100 00 11222 3344444443332 25799999999999998887644 56788887755443321
Q ss_pred cc-----------c----------------ch-----h--------hhhc------cCCCCC--C---------cccc--
Q 008873 451 GY-----------D----------------TF-----Y--------TEKY------MGLPSE--D---------PVGY-- 471 (550)
Q Consensus 451 ~~-----------~----------------~~-----~--------~~~~------~g~~~~--~---------~~~~-- 471 (550)
.. . .+ + ...+ +..+.. + .+.|
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~p~~~~~~~~~~~~~l~~~~~~~~~e~~~~~~~~~~w~~ 260 (994)
T PRK07868 181 AALPMGIPAGLAAAAADFMADHVFNRLDIPGWMARTGFQMLDPVKTAKARVDFLRQLHDREALLPREQQRRFLESEGWIA 260 (994)
T ss_pred CCCcccchhhhhhcccccchhhhhhcCCCCHHHHHHHHHhcChhHHHHHHHHHHHhcCchhhhccchhhHhHHHHhhccc
Confidence 00 0 00 0 0000 000000 0 0000
Q ss_pred --------------ccCChh----------hhhhcCCCcEEEEecCCCCCCChHHHHHHHHHHHHcCCCeEE-EEcCCCC
Q 008873 472 --------------EYSSVM----------HHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEI-LIFPDER 526 (550)
Q Consensus 472 --------------~~~~~~----------~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~-~~~p~~~ 526 (550)
..+... ..+.++++|+|+++|+.|.++|+..+..+.+.+ ...++ .+++++|
T Consensus 261 ~~g~~~~~~~~~~~~~n~~~~g~~~~~~~~~~L~~i~~P~L~i~G~~D~ivp~~~~~~l~~~i----~~a~~~~~~~~~G 336 (994)
T PRK07868 261 WSGPAISELLKQFIAHNRMMTGGFAINGQMVTLADITCPVLAFVGEVDDIGQPASVRGIRRAA----PNAEVYESLIRAG 336 (994)
T ss_pred cchHHHHHHHHHHHHhCcccCceEEECCEEcchhhCCCCEEEEEeCCCCCCCHHHHHHHHHhC----CCCeEEEEeCCCC
Confidence 000010 135778899999999999999999998887654 23455 5678999
Q ss_pred CcC--CCCCcHHHHHHHHHHHHHHh
Q 008873 527 HMP--RRHRDRIYMEERIWEFIERT 549 (550)
Q Consensus 527 H~~--~~~~~~~~~~~~~~~fl~~~ 549 (550)
|.. ........++..+.+||.++
T Consensus 337 H~g~~~g~~a~~~~wp~i~~wl~~~ 361 (994)
T PRK07868 337 HFGLVVGSRAAQQTWPTVADWVKWL 361 (994)
T ss_pred CEeeeechhhhhhhChHHHHHHHHh
Confidence 973 56677888999999999875
No 136
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=99.18 E-value=1.1e-08 Score=96.85 Aligned_cols=150 Identities=13% Similarity=0.187 Sum_probs=79.4
Q ss_pred ceEEEEEECCCCceEEEEEeecCceeeccCccccCCCCCccCCCcEEEEEccCC--c-cEEEEEeCCCceeeccccc-Ce
Q 008873 112 KLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYSGGFIWASEKTG--F-RHLYLHDINGTCLGPITEG-DW 187 (550)
Q Consensus 112 ~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g--~-~~l~~~~~~~~~~~~lT~~-~~ 187 (550)
...|+.|++++|+.+.|..+ ..|+.. ..|+|. +|..+.|..+... . .+||.++.+|+..+.|... ..
T Consensus 167 ~~~i~~idl~tG~~~~v~~~--~~wlgH-~~fsP~------dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~ 237 (386)
T PF14583_consen 167 HCRIFTIDLKTGERKVVFED--TDWLGH-VQFSPT------DPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEG 237 (386)
T ss_dssp -EEEEEEETTT--EEEEEEE--SS-EEE-EEEETT------EEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TT
T ss_pred CceEEEEECCCCceeEEEec--CccccC-cccCCC------CCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCC
Confidence 45788888888888777664 356653 445553 3444666665432 3 4899999999877766542 22
Q ss_pred EEEEEEeEeecCCEEEEEEcCCCCceeEEEEEEeCCCCCCCCCCCeeeCCCCceEEEEECCCCCEEEEeecCC-------
Q 008873 188 MVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTNGKGKHVAVLDHNMRNFVDFHDSL------- 260 (550)
Q Consensus 188 ~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~~v~~~~~g~~~~~~~~~lt~~~~~~~~~~s~dg~~l~~~~s~~------- 260 (550)
+...--.|++||+.|+|.+...+...+.|+.+++. .+ +.+++...+....+..|+||+.++-=.++.
T Consensus 238 e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~-t~-----~~~~~~~~p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~ 311 (386)
T PF14583_consen 238 ESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPD-TG-----ERRRLMEMPWCSHFMSSPDGKLFVGDGGDAPVDVADA 311 (386)
T ss_dssp EEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TT-T-------EEEEEEE-SEEEEEE-TTSSEEEEEE----------
T ss_pred cccccccccCCCCEEEEEeecCCCCceEEEeeCCC-CC-----CceEEEeCCceeeeEEcCCCCEEEecCCCCCcccccc
Confidence 32333359999999999776444456788888883 22 334444333344456689998876544432
Q ss_pred -----CCCCEEEEEEcCCCce
Q 008873 261 -----DSPPRILLCSLQDGSL 276 (550)
Q Consensus 261 -----~~p~~l~~~~~~~g~~ 276 (550)
..-|-||+++.+.++.
T Consensus 312 ~~~~~~~~p~i~~~~~~~~~~ 332 (386)
T PF14583_consen 312 GGYKIENDPWIYLFDVEAGRF 332 (386)
T ss_dssp ---------EEEEEETTTTEE
T ss_pred ccceecCCcEEEEeccccCce
Confidence 1124778888876653
No 137
>COG4188 Predicted dienelactone hydrolase [General function prediction only]
Probab=99.16 E-value=2.1e-10 Score=107.10 Aligned_cols=129 Identities=15% Similarity=0.044 Sum_probs=88.8
Q ss_pred eEEEEEcC-CCcEEEEEEEcCCCCCC--CCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCC
Q 008873 299 DIVQIQAN-DGTVLYGALYKPDESRY--GPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTAR 375 (550)
Q Consensus 299 ~~~~~~~~-~g~~l~~~~~~P~~~~~--~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~ 375 (550)
..+++... .+.++...++.|..... ...++|+|++-||.+... ..+.+.++.+++.||+|..++++|+..
T Consensus 39 ~~i~~~~~~r~~~~~v~~~~p~~~~~~~~~~~~PlvvlshG~Gs~~-------~~f~~~A~~lAs~Gf~Va~~~hpgs~~ 111 (365)
T COG4188 39 VTITLNDPQRDRERPVDLRLPQGGTGTVALYLLPLVVLSHGSGSYV-------TGFAWLAEHLASYGFVVAAPDHPGSNA 111 (365)
T ss_pred EEEeccCcccCCccccceeccCCCccccccCcCCeEEecCCCCCCc-------cchhhhHHHHhhCceEEEeccCCCccc
Confidence 44444443 35678888999876531 013789999999954332 134557899999999999999999642
Q ss_pred CchhhHHHH----hhccCCCchHHHHHHHHHHHHc---C----CCCCCceEEEEechhHHHHHHHHhhCC
Q 008873 376 RGLKFEASI----KHNCGRIDAEDQLTGAEWLIKQ---G----LAKVGHIGLYGWSYGGYLSAITLARFP 434 (550)
Q Consensus 376 ~~~~~~~~~----~~~~~~~~~~D~~~~~~~l~~~---~----~~d~~~i~i~G~S~GG~~a~~~~~~~~ 434 (550)
-+.+-.... ..........|+...+++|++. + .+|..+|+++|||+||+.++.++..+.
T Consensus 112 ~~~~~~~~~~~~~~p~~~~erp~dis~lLd~L~~~~~sP~l~~~ld~~~Vgv~GhS~GG~T~m~laGA~~ 181 (365)
T COG4188 112 GGAPAAYAGPGSYAPAEWWERPLDISALLDALLQLTASPALAGRLDPQRVGVLGHSFGGYTAMELAGAEL 181 (365)
T ss_pred ccCChhhcCCcccchhhhhcccccHHHHHHHHHHhhcCcccccccCccceEEEecccccHHHHHhccccc
Confidence 221111111 1111123478899999999887 4 488999999999999999998886543
No 138
>TIGR01839 PHA_synth_II poly(R)-hydroxyalkanoic acid synthase, class II. This model represents the class II subfamily of poly(R)-hydroxyalkanoate synthases, which polymerizes hydroxyacyl-CoAs, typically with six to fourteen carbons in the hydroxyacyl backbone into aliphatic esters termed poly(R)-hydroxyalkanoic acids. These polymers accumulate as carbon and energy storage inclusions in many species and can amount to 90 percent of the dry weight of cell.
Probab=99.15 E-value=2e-09 Score=107.51 Aligned_cols=209 Identities=14% Similarity=0.080 Sum_probs=126.3
Q ss_pred eEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCch
Q 008873 299 DIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGL 378 (550)
Q Consensus 299 ~~~~~~~~~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~ 378 (550)
..|.++. ..+..+.|.|.... ..+.|+|| ++.--....+.+- .+ -+.+.++|.++|+.|+++|.+.-+....
T Consensus 192 g~VV~~n---~l~eLiqY~P~te~--v~~~PLLI-VPp~INK~YIlDL-~P-~~SlVr~lv~qG~~VflIsW~nP~~~~r 263 (560)
T TIGR01839 192 GAVVFRN---EVLELIQYKPITEQ--QHARPLLV-VPPQINKFYIFDL-SP-EKSFVQYCLKNQLQVFIISWRNPDKAHR 263 (560)
T ss_pred CceeEEC---CceEEEEeCCCCCC--cCCCcEEE-echhhhhhheeec-CC-cchHHHHHHHcCCeEEEEeCCCCChhhc
Confidence 4455554 23555677775431 13446655 5653222222111 12 2446899999999999999997553322
Q ss_pred hhHHHHhhccCCCchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHH----HHhhCCC-eeEEEEEcCCcCCccccc
Q 008873 379 KFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAI----TLARFPD-VFQCAVSGAPVTSWDGYD 453 (550)
Q Consensus 379 ~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~----~~~~~~~-~~~~~v~~~~~~~~~~~~ 453 (550)
.+ ...++ ++.+.+|++.+.+.. ...+|.++|+|+||.+++. +++.+++ +++.++..+...|+..-.
T Consensus 264 ~~---~ldDY----v~~i~~Ald~V~~~t--G~~~vnl~GyC~GGtl~a~~~a~~aA~~~~~~V~sltllatplDf~~~g 334 (560)
T TIGR01839 264 EW---GLSTY----VDALKEAVDAVRAIT--GSRDLNLLGACAGGLTCAALVGHLQALGQLRKVNSLTYLVSLLDSTMES 334 (560)
T ss_pred CC---CHHHH----HHHHHHHHHHHHHhc--CCCCeeEEEECcchHHHHHHHHHHHhcCCCCceeeEEeeecccccCCCC
Confidence 11 11121 235667777776653 4578999999999999986 6666775 789988877766653100
Q ss_pred --c-----------------------------------------hhhhhc-cCCCC--CC-------------------c
Q 008873 454 --T-----------------------------------------FYTEKY-MGLPS--ED-------------------P 468 (550)
Q Consensus 454 --~-----------------------------------------~~~~~~-~g~~~--~~-------------------~ 468 (550)
. .+...| +|... .+ .
T Consensus 335 ~l~~f~~e~~~~~~e~~~~~~G~lpg~~ma~~F~~LrP~dliw~y~v~~yllg~~p~~fdll~Wn~D~t~lPg~~~~e~l 414 (560)
T TIGR01839 335 PAALFADEQTLEAAKRRSYQAGVLDGSEMAKVFAWMRPNDLIWNYWVNNYLLGNEPPAFDILYWNNDTTRLPAAFHGDLL 414 (560)
T ss_pred cchhccChHHHHHHHHHHHhcCCcCHHHHHHHHHhcCchhhhHHHHHHHhhcCCCcchhhHHHHhCcCccchHHHHHHHH
Confidence 0 000011 11100 00 0
Q ss_pred cccccCChh-----------hhhhcCCCcEEEEecCCCCCCChHHHHHHHHHHHHcCCCeEEEEcCCCCCc
Q 008873 469 VGYEYSSVM-----------HHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHM 528 (550)
Q Consensus 469 ~~~~~~~~~-----------~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p~~~H~ 528 (550)
+.|..+... -++++|++|+|++.|+.|.++|+..+..+.+.+ +.+++++..++ ||.
T Consensus 415 ~ly~~N~L~~pG~l~v~G~~idL~~I~~Pvl~va~~~DHIvPw~s~~~~~~l~---gs~~~fvl~~g-GHI 481 (560)
T TIGR01839 415 DMFKSNPLTRPDALEVCGTPIDLKKVKCDSFSVAGTNDHITPWDAVYRSALLL---GGKRRFVLSNS-GHI 481 (560)
T ss_pred HHHhcCCCCCCCCEEECCEEechhcCCCCeEEEecCcCCcCCHHHHHHHHHHc---CCCeEEEecCC-Ccc
Confidence 112222211 146778999999999999999999999888766 44788888865 785
No 139
>COG0627 Predicted esterase [General function prediction only]
Probab=99.14 E-value=7.2e-10 Score=104.36 Aligned_cols=212 Identities=18% Similarity=0.087 Sum_probs=132.3
Q ss_pred CCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCC--------------C--CCCCchhhHHHHhhcc-
Q 008873 326 PPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNR--------------G--TARRGLKFEASIKHNC- 388 (550)
Q Consensus 326 ~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~r--------------G--~g~~~~~~~~~~~~~~- 388 (550)
++.||++++||-.... ..+. ............|++++++|-. | ++.+.+ .....+
T Consensus 52 ~~ipV~~~l~G~t~~~---~~~~-~~~g~~~~a~~~g~~~~~p~t~~~~~~~~~~vv~p~G~~~sfY~d----~~~~~~~ 123 (316)
T COG0627 52 RDIPVLYLLSGLTCNE---PNVY-LLDGLRRQADESGWAVVTPDTSPRGAGVNISVVMPLGGGASFYSD----WTQPPWA 123 (316)
T ss_pred CCCCEEEEeCCCCCCC---CceE-eccchhhhhhhcCeEEecCCCCcccCCCCccccccCCCccceecc----cccCccc
Confidence 6789999999943321 1111 1222345566788888887422 2 111111 111100
Q ss_pred -CCCchHHHH--HHHHHHHHcCCCCC--CceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCcccc-----------
Q 008873 389 -GRIDAEDQL--TGAEWLIKQGLAKV--GHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGY----------- 452 (550)
Q Consensus 389 -~~~~~~D~~--~~~~~l~~~~~~d~--~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~~~----------- 452 (550)
+.....+++ +.-..+.+...++. ++.+|+|+||||+-|+.+|.++|++|+.+.+.+|+.+....
T Consensus 124 ~~~~q~~tfl~~ELP~~~~~~f~~~~~~~~~aI~G~SMGG~GAl~lA~~~pd~f~~~sS~Sg~~~~s~~~~~~~~~~~~~ 203 (316)
T COG0627 124 SGPYQWETFLTQELPALWEAAFPADGTGDGRAIAGHSMGGYGALKLALKHPDRFKSASSFSGILSPSSPWGPTLAMGDPW 203 (316)
T ss_pred cCccchhHHHHhhhhHHHHHhcCcccccCCceeEEEeccchhhhhhhhhCcchhceeccccccccccccccccccccccc
Confidence 011223322 12223333444455 38999999999999999999999999999999999876511
Q ss_pred cchhhhhccCCCCCCccccccCChhhhhhc--------------CCCcEEEEecCCCCCCC--hHHHHHHHHHHHHcCCC
Q 008873 453 DTFYTEKYMGLPSEDPVGYEYSSVMHHVHK--------------MKGKLLLVHGMIDENVH--FRHTARLINALVAARKP 516 (550)
Q Consensus 453 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~--------------i~~P~lii~G~~D~~v~--~~~~~~~~~~l~~~~~~ 516 (550)
.....+.++|.... ..+..+++...+++ ...++++-+|..|.... ......+.+++.+.|.+
T Consensus 204 g~~~~~~~~G~~~~--~~w~~~D~~~~~~~l~~~~~~~~~~~~~~~~~~~~d~g~ad~~~~~~~~~~~~~~~a~~~~g~~ 281 (316)
T COG0627 204 GGKAFNAMLGPDSD--PAWQENDPLSLIEKLVANANTRIWVYGGSPPELLIDNGPADFFLAANNLSTRAFAEALRAAGIP 281 (316)
T ss_pred cCccHHHhcCCCcc--ccccccCchhHHHHhhhcccccceecccCCCccccccccchhhhhhcccCHHHHHHHHHhcCCC
Confidence 11222233343322 24566666666554 34677888899887653 34478899999999999
Q ss_pred eEEEEcCCCCCcCCCCCcHHHHHHHHHHHHHHhC
Q 008873 517 YEILIFPDERHMPRRHRDRIYMEERIWEFIERTL 550 (550)
Q Consensus 517 ~~~~~~p~~~H~~~~~~~~~~~~~~~~~fl~~~l 550 (550)
..+..+++..|.+.. ....++..+.|+.+.|
T Consensus 282 ~~~~~~~~G~Hsw~~---w~~~l~~~~~~~a~~l 312 (316)
T COG0627 282 NGVRDQPGGDHSWYF---WASQLADHLPWLAGAL 312 (316)
T ss_pred ceeeeCCCCCcCHHH---HHHHHHHHHHHHHHHh
Confidence 999999999998743 4555677888887653
No 140
>cd00312 Esterase_lipase Esterases and lipases (includes fungal lipases, cholinesterases, etc.) These enzymes act on carboxylic esters (EC: 3.1.1.-). The catalytic apparatus involves three residues (catalytic triad): a serine, a glutamate or aspartate and a histidine.These catalytic residues are responsible for the nucleophilic attack on the carbonyl carbon atom of the ester bond. In contrast with other alpha/beta hydrolase fold family members, p-nitrobenzyl esterase and acetylcholine esterase have a Glu instead of Asp at the active site carboxylate.
Probab=99.13 E-value=1e-10 Score=120.94 Aligned_cols=128 Identities=17% Similarity=0.204 Sum_probs=89.3
Q ss_pred EEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHh-CC-cEEEEECCC-CCCCCchhhHHHHhhc
Q 008873 311 LYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRS-KG-ILVWKLDNR-GTARRGLKFEASIKHN 387 (550)
Q Consensus 311 l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~-~G-~~vv~~d~r-G~g~~~~~~~~~~~~~ 387 (550)
+...++.|.... ..+++||||++|||+........ . ....++. .+ ++||.++|| |.-++...... ..
T Consensus 79 l~l~i~~p~~~~-~~~~~pv~v~ihGG~~~~g~~~~----~--~~~~~~~~~~~~~vv~~~yRlg~~g~~~~~~~---~~ 148 (493)
T cd00312 79 LYLNVYTPKNTK-PGNSLPVMVWIHGGGFMFGSGSL----Y--PGDGLAREGDNVIVVSINYRLGVLGFLSTGDI---EL 148 (493)
T ss_pred CeEEEEeCCCCC-CCCCCCEEEEEcCCccccCCCCC----C--ChHHHHhcCCCEEEEEecccccccccccCCCC---CC
Confidence 667888887532 12678999999999765432111 1 1334443 44 999999999 65544322211 12
Q ss_pred cCCCchHHHHHHHHHHHHc---CCCCCCceEEEEechhHHHHHHHHhh--CCCeeEEEEEcCCcCC
Q 008873 388 CGRIDAEDQLTGAEWLIKQ---GLAKVGHIGLYGWSYGGYLSAITLAR--FPDVFQCAVSGAPVTS 448 (550)
Q Consensus 388 ~~~~~~~D~~~~~~~l~~~---~~~d~~~i~i~G~S~GG~~a~~~~~~--~~~~~~~~v~~~~~~~ 448 (550)
.+...+.|+..+++|+.+. ...|+++|.|+|+|+||+++..++.. .+.+|+++|+.+|...
T Consensus 149 ~~n~g~~D~~~al~wv~~~i~~fggd~~~v~~~G~SaG~~~~~~~~~~~~~~~lf~~~i~~sg~~~ 214 (493)
T cd00312 149 PGNYGLKDQRLALKWVQDNIAAFGGDPDSVTIFGESAGGASVSLLLLSPDSKGLFHRAISQSGSAL 214 (493)
T ss_pred CcchhHHHHHHHHHHHHHHHHHhCCCcceEEEEeecHHHHHhhhHhhCcchhHHHHHHhhhcCCcc
Confidence 2334489999999999875 34799999999999999999988875 2457999998887543
No 141
>PF05728 UPF0227: Uncharacterised protein family (UPF0227); InterPro: IPR008886 Despite being classed as uncharacterised proteins, the members of this family are almost certainly enzymes in that they contain a domain distantly related to IPR000073 from INTERPRO. One of the members of this family YqiA has been shown to be a esterase []. Other members, which include the Escherichia coli (strain K12) YcfP protein are uncharacterised.
Probab=99.13 E-value=2.4e-09 Score=93.28 Aligned_cols=173 Identities=18% Similarity=0.162 Sum_probs=100.1
Q ss_pred EEEEcCCCCceeecccccccchhHhHHHHhCC--cEEEEECCCCCCCCchhhHHHHhhccCCCchHHHHHHHHHHHHcCC
Q 008873 331 LISVYGGPCVQLVCDSWINTVDMRAQYLRSKG--ILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGL 408 (550)
Q Consensus 331 vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G--~~vv~~d~rG~g~~~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~ 408 (550)
|+|+||-..+.. +.....+.+++++.+ ..+.+++.+-. .++.++.+..++++.
T Consensus 2 ilYlHGF~Ssp~-----S~Ka~~l~~~~~~~~~~~~~~~p~l~~~-------------------p~~a~~~l~~~i~~~- 56 (187)
T PF05728_consen 2 ILYLHGFNSSPQ-----SFKAQALKQYFAEHGPDIQYPCPDLPPF-------------------PEEAIAQLEQLIEEL- 56 (187)
T ss_pred eEEecCCCCCCC-----CHHHHHHHHHHHHhCCCceEECCCCCcC-------------------HHHHHHHHHHHHHhC-
Confidence 789999433321 112233456677766 45666666522 233444444454442
Q ss_pred CCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCcccccchhhhhccCCCC--CCcccc-------ccCChhhh
Q 008873 409 AKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTFYTEKYMGLPS--EDPVGY-------EYSSVMHH 479 (550)
Q Consensus 409 ~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~~~--~~~~~~-------~~~~~~~~ 479 (550)
.++.+.|+|.|+||+.|.+++.+++ +++ |+++|....... ...++|... ...+.| .....+..
T Consensus 57 -~~~~~~liGSSlGG~~A~~La~~~~--~~a-vLiNPav~p~~~----l~~~iG~~~~~~~~e~~~~~~~~~~~l~~l~~ 128 (187)
T PF05728_consen 57 -KPENVVLIGSSLGGFYATYLAERYG--LPA-VLINPAVRPYEL----LQDYIGEQTNPYTGESYELTEEHIEELKALEV 128 (187)
T ss_pred -CCCCeEEEEEChHHHHHHHHHHHhC--CCE-EEEcCCCCHHHH----HHHhhCccccCCCCccceechHhhhhcceEec
Confidence 2345999999999999999998774 234 777887653211 011122100 000111 11001110
Q ss_pred h-hcCCCcEEEEecCCCCCCChHHHHHHHHHHHHcCCCeEEEEcCCCCCcCCCCCcHHHHHHHHHHHH
Q 008873 480 V-HKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFI 546 (550)
Q Consensus 480 ~-~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p~~~H~~~~~~~~~~~~~~~~~fl 546 (550)
. ..-..++++++++.|+++++..+...++. ...++.+|++|.+.+ .......|++|+
T Consensus 129 ~~~~~~~~~lvll~~~DEvLd~~~a~~~~~~-------~~~~i~~ggdH~f~~---f~~~l~~i~~f~ 186 (187)
T PF05728_consen 129 PYPTNPERYLVLLQTGDEVLDYREAVAKYRG-------CAQIIEEGGDHSFQD---FEEYLPQIIAFL 186 (187)
T ss_pred cccCCCccEEEEEecCCcccCHHHHHHHhcC-------ceEEEEeCCCCCCcc---HHHHHHHHHHhh
Confidence 0 11235899999999999999777666542 344567888999854 666778888886
No 142
>PF02273 Acyl_transf_2: Acyl transferase; InterPro: IPR003157 LuxD proteins are bacterial acyl transferases. Together with an acyl-protein synthetase (LuxE) and reductase (LuxC), they form a multienzyme complex. This complex channels activated fatty acids into the aldehyde substrate for the luciferase-catalyzed bacterial bioluminescence reaction [, ]. ; GO: 0016746 transferase activity, transferring acyl groups, 0006631 fatty acid metabolic process; PDB: 1THT_B.
Probab=99.11 E-value=5.8e-09 Score=90.69 Aligned_cols=210 Identities=17% Similarity=0.242 Sum_probs=114.5
Q ss_pred EEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCC-CCCchh
Q 008873 301 VQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGT-ARRGLK 379 (550)
Q Consensus 301 ~~~~~~~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~-g~~~~~ 379 (550)
..+...+|.+|..|.-.|.... +++.|.||...|-.... ..+..++.+|+.+||.|+.+|.--+ |.+...
T Consensus 5 hvi~~~~~~~I~vwet~P~~~~--~~~~~tiliA~Gf~rrm-------dh~agLA~YL~~NGFhViRyDsl~HvGlSsG~ 75 (294)
T PF02273_consen 5 HVIRLEDGRQIRVWETRPKNNE--PKRNNTILIAPGFARRM-------DHFAGLAEYLSANGFHVIRYDSLNHVGLSSGD 75 (294)
T ss_dssp EEEEETTTEEEEEEEE---TTS-----S-EEEEE-TT-GGG-------GGGHHHHHHHHTTT--EEEE---B--------
T ss_pred ceeEcCCCCEEEEeccCCCCCC--cccCCeEEEecchhHHH-------HHHHHHHHHHhhCCeEEEeccccccccCCCCC
Confidence 3456678999999999998742 35678888887743322 1345578999999999999997754 333322
Q ss_pred hHHHHhhccCCCchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCcccc-cchhhh
Q 008873 380 FEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGY-DTFYTE 458 (550)
Q Consensus 380 ~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~~~ 458 (550)
..+..... ...|+..+++||.+.+ ..+++++.-|.-|-+|...+.+ .+ ..-+|...|+.+++.. ...+..
T Consensus 76 I~eftms~----g~~sL~~V~dwl~~~g---~~~~GLIAaSLSaRIAy~Va~~-i~-lsfLitaVGVVnlr~TLe~al~~ 146 (294)
T PF02273_consen 76 INEFTMSI----GKASLLTVIDWLATRG---IRRIGLIAASLSARIAYEVAAD-IN-LSFLITAVGVVNLRDTLEKALGY 146 (294)
T ss_dssp -----HHH----HHHHHHHHHHHHHHTT------EEEEEETTHHHHHHHHTTT-S---SEEEEES--S-HHHHHHHHHSS
T ss_pred hhhcchHH----hHHHHHHHHHHHHhcC---CCcchhhhhhhhHHHHHHHhhc-cC-cceEEEEeeeeeHHHHHHHHhcc
Confidence 22221111 1578899999999775 4689999999999999999985 45 4555555688887532 112222
Q ss_pred hccCCCCC----Cc--cc----------------cc-cCChhhhhhcCCCcEEEEecCCCCCCChHHHHHHHHHHHHcCC
Q 008873 459 KYMGLPSE----DP--VG----------------YE-YSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARK 515 (550)
Q Consensus 459 ~~~g~~~~----~~--~~----------------~~-~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~ 515 (550)
.|++.|.+ +. +. |. ..+-...++.+.+|++.+++.+|..|...+..++...+. ..
T Consensus 147 Dyl~~~i~~lp~dldfeGh~l~~~vFv~dc~e~~w~~l~ST~~~~k~l~iP~iaF~A~~D~WV~q~eV~~~~~~~~--s~ 224 (294)
T PF02273_consen 147 DYLQLPIEQLPEDLDFEGHNLGAEVFVTDCFEHGWDDLDSTINDMKRLSIPFIAFTANDDDWVKQSEVEELLDNIN--SN 224 (294)
T ss_dssp -GGGS-GGG--SEEEETTEEEEHHHHHHHHHHTT-SSHHHHHHHHTT--S-EEEEEETT-TTS-HHHHHHHHTT-T--T-
T ss_pred chhhcchhhCCCcccccccccchHHHHHHHHHcCCccchhHHHHHhhCCCCEEEEEeCCCccccHHHHHHHHHhcC--CC
Confidence 23322211 00 00 00 113345678888999999999999999888888877652 34
Q ss_pred CeEEEEcCCCCCcCC
Q 008873 516 PYEILIFPDERHMPR 530 (550)
Q Consensus 516 ~~~~~~~p~~~H~~~ 530 (550)
..++...+|+.|.+.
T Consensus 225 ~~klysl~Gs~HdL~ 239 (294)
T PF02273_consen 225 KCKLYSLPGSSHDLG 239 (294)
T ss_dssp -EEEEEETT-SS-TT
T ss_pred ceeEEEecCccchhh
Confidence 678889999999873
No 143
>COG3571 Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only]
Probab=99.09 E-value=9.8e-09 Score=82.88 Aligned_cols=185 Identities=19% Similarity=0.182 Sum_probs=112.1
Q ss_pred eEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCchhhHHHHhhccCCCch-HHHHHHHHHHHHcC
Q 008873 329 KTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDA-EDQLTGAEWLIKQG 407 (550)
Q Consensus 329 P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~~~~~~~~~~~~~~~~-~D~~~~~~~l~~~~ 407 (550)
-+||+.||.+.+.. ++.+...+..|+.+|+.|+.++++-.-..-.. .. ....+.... ...+.++..|...
T Consensus 15 ~tilLaHGAGasmd-----St~m~~~a~~la~~G~~vaRfefpYma~Rrtg-~r--kPp~~~~t~~~~~~~~~aql~~~- 85 (213)
T COG3571 15 VTILLAHGAGASMD-----STSMTAVAAALARRGWLVARFEFPYMAARRTG-RR--KPPPGSGTLNPEYIVAIAQLRAG- 85 (213)
T ss_pred EEEEEecCCCCCCC-----CHHHHHHHHHHHhCceeEEEeecchhhhcccc-CC--CCcCccccCCHHHHHHHHHHHhc-
Confidence 46778899766643 22334457788999999999987532111000 00 000111111 2234444445443
Q ss_pred CCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEc-CCcCCcccccchhhhhccCCCCCCccccccCChhhhhhcCCCc
Q 008873 408 LAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSG-APVTSWDGYDTFYTEKYMGLPSEDPVGYEYSSVMHHVHKMKGK 486 (550)
Q Consensus 408 ~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~P 486 (550)
.+..+++|-|+||||-++.+++..---.+.++++. .|+.. -|.|+.- -..|+..+++|
T Consensus 86 -l~~gpLi~GGkSmGGR~aSmvade~~A~i~~L~clgYPfhp------------pGKPe~~--------Rt~HL~gl~tP 144 (213)
T COG3571 86 -LAEGPLIIGGKSMGGRVASMVADELQAPIDGLVCLGYPFHP------------PGKPEQL--------RTEHLTGLKTP 144 (213)
T ss_pred -ccCCceeeccccccchHHHHHHHhhcCCcceEEEecCccCC------------CCCcccc--------hhhhccCCCCC
Confidence 36678999999999999999887532225666654 34321 1333221 13678889999
Q ss_pred EEEEecCCCCCCChHHHHHHHHHHHHcCCCeEEEEcCCCCCcCCCC---------CcHHHHHHHHHHHHHH
Q 008873 487 LLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRH---------RDRIYMEERIWEFIER 548 (550)
Q Consensus 487 ~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p~~~H~~~~~---------~~~~~~~~~~~~fl~~ 548 (550)
+||.||+.|+.-...+...+ ....+.+++++.++.|.+... .+.....+.+..|...
T Consensus 145 tli~qGtrD~fGtr~~Va~y-----~ls~~iev~wl~~adHDLkp~k~vsgls~~~hL~~~A~~va~~~~~ 210 (213)
T COG3571 145 TLITQGTRDEFGTRDEVAGY-----ALSDPIEVVWLEDADHDLKPRKLVSGLSTADHLKTLAEQVAGWARR 210 (213)
T ss_pred eEEeecccccccCHHHHHhh-----hcCCceEEEEeccCccccccccccccccHHHHHHHHHHHHHHHHhh
Confidence 99999999987665544222 235689999999999987321 2334456667777653
No 144
>COG2382 Fes Enterochelin esterase and related enzymes [Inorganic ion transport and metabolism]
Probab=99.08 E-value=6e-09 Score=94.60 Aligned_cols=205 Identities=16% Similarity=0.068 Sum_probs=116.5
Q ss_pred eEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhC----CcEEEEECCCCCC
Q 008873 299 DIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSK----GILVWKLDNRGTA 374 (550)
Q Consensus 299 ~~~~~~~~~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~----G~~vv~~d~rG~g 374 (550)
+.+.+.+.-..+....+|.|.+... ..|+||++++||-...+. ..-.. ....|... ..++|.+|+--.-
T Consensus 70 ~~~~~~~~l~~~~~~vv~lppgy~~-~~k~pvl~~~DG~~~~~~-----g~i~~-~~dsli~~g~i~pai~vgid~~d~~ 142 (299)
T COG2382 70 EEILYSSELLSERRRVVYLPPGYNP-LEKYPVLYLQDGQDWFRS-----GRIPR-ILDSLIAAGEIPPAILVGIDYIDVK 142 (299)
T ss_pred hhhhhhhhhccceeEEEEeCCCCCc-cccccEEEEeccHHHHhc-----CChHH-HHHHHHHcCCCCCceEEecCCCCHH
Confidence 4444443333445667777877643 379999999998432221 11111 23334433 4778888875321
Q ss_pred CCchhhHHHHhhccCCCch-HH-HHHHHHHHHHcC--CCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCcc
Q 008873 375 RRGLKFEASIKHNCGRIDA-ED-QLTGAEWLIKQG--LAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWD 450 (550)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~-~D-~~~~~~~l~~~~--~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~ 450 (550)
.... ..... ..+ +. +.+.+-++.+.. .-+.++-+++|.|+||.++++++.++|++|.++++.+|..++.
T Consensus 143 ~R~~-----~~~~n--~~~~~~L~~eLlP~v~~~yp~~~~a~~r~L~G~SlGG~vsL~agl~~Pe~FG~V~s~Sps~~~~ 215 (299)
T COG2382 143 KRRE-----ELHCN--EAYWRFLAQELLPYVEERYPTSADADGRVLAGDSLGGLVSLYAGLRHPERFGHVLSQSGSFWWT 215 (299)
T ss_pred HHHH-----Hhccc--HHHHHHHHHHhhhhhhccCcccccCCCcEEeccccccHHHHHHHhcCchhhceeeccCCccccC
Confidence 1111 11111 001 11 112233444431 2456778899999999999999999999999999999987765
Q ss_pred cccchhhhhccCCCCCCccccccCChhhhhhcCCCcEEEEecCCCCCCChHHHHHHHHHHHHcCCCeEEEEcCCCCCcCC
Q 008873 451 GYDTFYTEKYMGLPSEDPVGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPR 530 (550)
Q Consensus 451 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p~~~H~~~ 530 (550)
-.+..- +. +.....+..........-++..-++.+...+ ...++++.|+..+.++.+..|+| ||...
T Consensus 216 ~~~~~~--------~~--~~~~~l~~~~a~~~~~~~~l~~g~~~~~~~~--pNr~L~~~L~~~g~~~~yre~~G-gHdw~ 282 (299)
T COG2382 216 PLDTQP--------QG--EVAESLKILHAIGTDERIVLTTGGEEGDFLR--PNRALAAQLEKKGIPYYYREYPG-GHDWA 282 (299)
T ss_pred cccccc--------cc--chhhhhhhhhccCccceEEeecCCccccccc--hhHHHHHHHHhcCCcceeeecCC-CCchh
Confidence 332210 00 0011111111122222323333344444444 55789999999999999999999 99763
No 145
>KOG2382 consensus Predicted alpha/beta hydrolase [General function prediction only]
Probab=99.06 E-value=1.9e-09 Score=99.15 Aligned_cols=205 Identities=18% Similarity=0.147 Sum_probs=125.3
Q ss_pred CCceEEEEEcCCCCceeecccccccchhHhHHHH-hCCcEEEEECCCCCCCCchhhHHHHhhccCCCchHHHHHHHHHHH
Q 008873 326 PPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLR-SKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLI 404 (550)
Q Consensus 326 ~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~-~~G~~vv~~d~rG~g~~~~~~~~~~~~~~~~~~~~D~~~~~~~l~ 404 (550)
.+.|.++.+||--++.. +|......|+ ..|--|+++|.|-+|.+...-. . + .....+|+...++...
T Consensus 50 ~~~Pp~i~lHGl~GS~~-------Nw~sv~k~Ls~~l~~~v~~vd~RnHG~Sp~~~~---h-~-~~~ma~dv~~Fi~~v~ 117 (315)
T KOG2382|consen 50 ERAPPAIILHGLLGSKE-------NWRSVAKNLSRKLGRDVYAVDVRNHGSSPKITV---H-N-YEAMAEDVKLFIDGVG 117 (315)
T ss_pred CCCCceEEecccccCCC-------CHHHHHHHhcccccCceEEEecccCCCCccccc---c-C-HHHHHHHHHHHHHHcc
Confidence 46688899999655532 3444566665 5688999999999987753211 0 0 1122566666666654
Q ss_pred HcCCCCCCceEEEEechhH-HHHHHHHhhCCCeeEEEEEc--CCc-CCcccc------------cch-------------
Q 008873 405 KQGLAKVGHIGLYGWSYGG-YLSAITLARFPDVFQCAVSG--APV-TSWDGY------------DTF------------- 455 (550)
Q Consensus 405 ~~~~~d~~~i~i~G~S~GG-~~a~~~~~~~~~~~~~~v~~--~~~-~~~~~~------------~~~------------- 455 (550)
... -..++.|+|||||| .+++..+...|+.+.-+|+. +|. ...... +..
T Consensus 118 ~~~--~~~~~~l~GHsmGG~~~~m~~t~~~p~~~~rliv~D~sP~~~~~~~~e~~e~i~~m~~~d~~~~~~~~rke~~~~ 195 (315)
T KOG2382|consen 118 GST--RLDPVVLLGHSMGGVKVAMAETLKKPDLIERLIVEDISPGGVGRSYGEYRELIKAMIQLDLSIGVSRGRKEALKS 195 (315)
T ss_pred ccc--ccCCceecccCcchHHHHHHHHHhcCcccceeEEEecCCccCCcccchHHHHHHHHHhccccccccccHHHHHHH
Confidence 332 23578999999999 66666666778876555543 341 111000 000
Q ss_pred ------------hhhhccC-CCCCCcccc-----------c---cCChhhhh--hcCCCcEEEEecCCCCCCChHHHHHH
Q 008873 456 ------------YTEKYMG-LPSEDPVGY-----------E---YSSVMHHV--HKMKGKLLLVHGMIDENVHFRHTARL 506 (550)
Q Consensus 456 ------------~~~~~~g-~~~~~~~~~-----------~---~~~~~~~~--~~i~~P~lii~G~~D~~v~~~~~~~~ 506 (550)
|....+. .+.+....| . ..+.-..+ .....|+|+++|+++..++.++-.++
T Consensus 196 l~~~~~d~~~~~fi~~nl~~~~~~~s~~w~~nl~~i~~~~~~~~~~s~~~~l~~~~~~~pvlfi~g~~S~fv~~~~~~~~ 275 (315)
T KOG2382|consen 196 LIEVGFDNLVRQFILTNLKKSPSDGSFLWRVNLDSIASLLDEYEILSYWADLEDGPYTGPVLFIKGLQSKFVPDEHYPRM 275 (315)
T ss_pred HHHHhcchHHHHHHHHhcCcCCCCCceEEEeCHHHHHHHHHHHHhhcccccccccccccceeEEecCCCCCcChhHHHHH
Confidence 0000001 111110001 1 11111112 33457999999999999998877666
Q ss_pred HHHHHHcCCCeEEEEcCCCCCcCCCCCcHHHHHHHHHHHHHHh
Q 008873 507 INALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIERT 549 (550)
Q Consensus 507 ~~~l~~~~~~~~~~~~p~~~H~~~~~~~~~~~~~~~~~fl~~~ 549 (550)
.+.+ ..++++.++++||+. +-++.+.+.+.+.+|++++
T Consensus 276 ~~~f----p~~e~~~ld~aGHwV-h~E~P~~~~~~i~~Fl~~~ 313 (315)
T KOG2382|consen 276 EKIF----PNVEVHELDEAGHWV-HLEKPEEFIESISEFLEEP 313 (315)
T ss_pred HHhc----cchheeecccCCcee-ecCCHHHHHHHHHHHhccc
Confidence 5544 458999999999998 6688899999999998865
No 146
>PF06342 DUF1057: Alpha/beta hydrolase of unknown function (DUF1057); InterPro: IPR010463 This entry consists of proteins of unknown function which have an alpha/beta hydrolase fold.
Probab=99.05 E-value=1.7e-08 Score=90.62 Aligned_cols=103 Identities=17% Similarity=0.133 Sum_probs=75.8
Q ss_pred CceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCchhhHHHHhhccCCCchHHHHHHHHHHHHc
Q 008873 327 PYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQ 406 (550)
Q Consensus 327 ~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~ 406 (550)
+..+||-+||.|++.. .+..+...|.+.|+.++.+||+|+|........ ...-.+-...++.|.++
T Consensus 34 ~~gTVv~~hGsPGSH~-------DFkYi~~~l~~~~iR~I~iN~PGf~~t~~~~~~-------~~~n~er~~~~~~ll~~ 99 (297)
T PF06342_consen 34 PLGTVVAFHGSPGSHN-------DFKYIRPPLDEAGIRFIGINYPGFGFTPGYPDQ-------QYTNEERQNFVNALLDE 99 (297)
T ss_pred CceeEEEecCCCCCcc-------chhhhhhHHHHcCeEEEEeCCCCCCCCCCCccc-------ccChHHHHHHHHHHHHH
Confidence 4568999999999854 445578899999999999999998865432211 11234455556666665
Q ss_pred CCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCc
Q 008873 407 GLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPV 446 (550)
Q Consensus 407 ~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~ 446 (550)
-.++ +++.++|||.|+-.|+.+++.+| ..++++.+|+
T Consensus 100 l~i~-~~~i~~gHSrGcenal~la~~~~--~~g~~lin~~ 136 (297)
T PF06342_consen 100 LGIK-GKLIFLGHSRGCENALQLAVTHP--LHGLVLINPP 136 (297)
T ss_pred cCCC-CceEEEEeccchHHHHHHHhcCc--cceEEEecCC
Confidence 4455 78999999999999999999885 3567776664
No 147
>KOG2624 consensus Triglyceride lipase-cholesterol esterase [Lipid transport and metabolism]
Probab=99.05 E-value=6.6e-09 Score=100.60 Aligned_cols=241 Identities=17% Similarity=0.157 Sum_probs=159.0
Q ss_pred CCCCCeEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccc--cchhHhHHHHhCCcEEEEECCC
Q 008873 294 QLEPPDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWIN--TVDMRAQYLRSKGILVWKLDNR 371 (550)
Q Consensus 294 ~~~~~~~~~~~~~~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~--~~~~~~~~l~~~G~~vv~~d~r 371 (550)
.-.+.|...+++.||..+..-.+ |... +++|+|++.||--.+.. .|-. .-...+-.|+.+||.|..-|.|
T Consensus 44 ~gy~~E~h~V~T~DgYiL~lhRI-p~~~----~~rp~Vll~HGLl~sS~---~Wv~n~p~~sLaf~LadaGYDVWLgN~R 115 (403)
T KOG2624|consen 44 YGYPVEEHEVTTEDGYILTLHRI-PRGK----KKRPVVLLQHGLLASSS---SWVLNGPEQSLAFLLADAGYDVWLGNNR 115 (403)
T ss_pred cCCceEEEEEEccCCeEEEEeee-cCCC----CCCCcEEEeeccccccc---cceecCccccHHHHHHHcCCceeeecCc
Confidence 34477999999999985554444 4432 57799999999543332 2311 1233567789999999999999
Q ss_pred CCCCCchh-----------hHHHHhhccCCCchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhCCC---ee
Q 008873 372 GTARRGLK-----------FEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPD---VF 437 (550)
Q Consensus 372 G~g~~~~~-----------~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~---~~ 437 (550)
|... .+. |-.....+ ...-|+-+.++++.+.. ..+++..+|||.|+.....++...|+ ++
T Consensus 116 Gn~y-Sr~h~~l~~~~~~~FW~FS~~E---m~~yDLPA~IdyIL~~T--~~~kl~yvGHSQGtt~~fv~lS~~p~~~~kI 189 (403)
T KOG2624|consen 116 GNTY-SRKHKKLSPSSDKEFWDFSWHE---MGTYDLPAMIDYILEKT--GQEKLHYVGHSQGTTTFFVMLSERPEYNKKI 189 (403)
T ss_pred Cccc-chhhcccCCcCCcceeecchhh---hhhcCHHHHHHHHHHhc--cccceEEEEEEccchhheehhcccchhhhhh
Confidence 9543 222 22111222 23568899999998764 46799999999999999999988765 68
Q ss_pred EEEEEcCCcCCcccc----------------------------c-ch----h-----h-h------------hccC----
Q 008873 438 QCAVSGAPVTSWDGY----------------------------D-TF----Y-----T-E------------KYMG---- 462 (550)
Q Consensus 438 ~~~v~~~~~~~~~~~----------------------------~-~~----~-----~-~------------~~~g---- 462 (550)
+..++.+|+.-.... . .. + . . ...|
T Consensus 190 ~~~~aLAP~~~~k~~~~~~~~~~~~~~~~~~~~~~~fg~~~f~p~~~~~~~~~~~~C~~~~~~~~lC~~~~~~~~G~~~~ 269 (403)
T KOG2624|consen 190 KSFIALAPAAFPKHIKSLLNKFLDPFLGAFSLLPLLFGRKEFLPSNLFIKKFARKICSGSKIFADLCSNFLFLLVGWNSN 269 (403)
T ss_pred heeeeecchhhhcccccHHHHhhhhhhhhhhHHHHhcCCccccchhhHHHHHHHHHhcchhHHHHHHHHHHHHHcCcchH
Confidence 888899887632200 0 00 0 0 0 0000
Q ss_pred -------------CCC---------------------------CCcccccc-CChhhhhhcCCCcEEEEecCCCCCCChH
Q 008873 463 -------------LPS---------------------------EDPVGYEY-SSVMHHVHKMKGKLLLVHGMIDENVHFR 501 (550)
Q Consensus 463 -------------~~~---------------------------~~~~~~~~-~~~~~~~~~i~~P~lii~G~~D~~v~~~ 501 (550)
.|. .+...|.. ..|...+.++++|+.+.+|.+|..+.++
T Consensus 270 ~~n~~~~~~~~~h~pagtSvk~~~H~~Q~~~s~~f~~yD~G~~~N~~~Y~q~~pP~Y~l~~i~~P~~l~~g~~D~l~~~~ 349 (403)
T KOG2624|consen 270 NWNTTLLPVYLAHLPAGTSVKNIVHWAQIVRSGKFRKYDYGSKRNLKHYGQSTPPEYDLTNIKVPTALYYGDNDWLADPE 349 (403)
T ss_pred hhhhcccchhhccCCCCccHHHHHHHHHHhcCCCccccCCCccccHhhcCCCCCCCCCccccccCEEEEecCCcccCCHH
Confidence 000 11222222 2456667888999999999999999999
Q ss_pred HHHHHHHHHHHcCCCeEEEEcCCCCCc--CCCCCcHHHHHHHHHHHHHHh
Q 008873 502 HTARLINALVAARKPYEILIFPDERHM--PRRHRDRIYMEERIWEFIERT 549 (550)
Q Consensus 502 ~~~~~~~~l~~~~~~~~~~~~p~~~H~--~~~~~~~~~~~~~~~~fl~~~ 549 (550)
....+...+..... ...+.+++-+|. +.....++.+++.+++.+++.
T Consensus 350 DV~~~~~~~~~~~~-~~~~~~~~ynHlDFi~g~da~~~vy~~vi~~~~~~ 398 (403)
T KOG2624|consen 350 DVLILLLVLPNSVI-KYIVPIPEYNHLDFIWGLDAKEEVYDPVIERLRLF 398 (403)
T ss_pred HHHHHHHhcccccc-cccccCCCccceeeeeccCcHHHHHHHHHHHHHhh
Confidence 98888777654433 233337888885 235567888999999988753
No 148
>COG2819 Predicted hydrolase of the alpha/beta superfamily [General function prediction only]
Probab=99.05 E-value=2.5e-08 Score=89.42 Aligned_cols=125 Identities=16% Similarity=0.141 Sum_probs=77.8
Q ss_pred HHHcCCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCcccccchhhhhccCCCCCCccccccCChhhhhhc
Q 008873 403 LIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTFYTEKYMGLPSEDPVGYEYSSVMHHVHK 482 (550)
Q Consensus 403 l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 482 (550)
+.++..++.++.+|+|||+||.+++.++..+|+.|.+.++.+|-.-|... ..............
T Consensus 128 Ie~~y~~~~~~~~i~GhSlGGLfvl~aLL~~p~~F~~y~~~SPSlWw~n~----------------~~l~~~~~~~~~~~ 191 (264)
T COG2819 128 IEARYRTNSERTAIIGHSLGGLFVLFALLTYPDCFGRYGLISPSLWWHNE----------------AILREIESLKLLKT 191 (264)
T ss_pred HhcccccCcccceeeeecchhHHHHHHHhcCcchhceeeeecchhhhCCH----------------HHhccccccccCCC
Confidence 33345588999999999999999999999999999999999986433211 11111111111112
Q ss_pred CCCcEEEEecCCCCCCC------hHHHHHHHHHHHH-cCCCeEEEEcCCCCCcCCCCCcHHHHHHHHHHHHH
Q 008873 483 MKGKLLLVHGMIDENVH------FRHTARLINALVA-ARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIE 547 (550)
Q Consensus 483 i~~P~lii~G~~D~~v~------~~~~~~~~~~l~~-~~~~~~~~~~p~~~H~~~~~~~~~~~~~~~~~fl~ 547 (550)
.+.-+++-.|+.|.... ..++.+....+++ .+....+..+|+++|+- .....+..+++|+.
T Consensus 192 ~~i~l~iG~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~f~~~~~~~H~~----~~~~~~~~al~~l~ 259 (264)
T COG2819 192 KRICLYIGSGELDSSRSIRMAENKQEAAELSSLLEKRTGARLVFQEEPLEHHGS----VIHASLPSALRFLD 259 (264)
T ss_pred cceEEEecccccCcchhhhhhhHHHHHHHHHHHHhhccCCceEecccccccccc----hHHHHHHHHHHhhh
Confidence 22334444555554222 3455555566666 67788899999888874 22334455666654
No 149
>KOG3847 consensus Phospholipase A2 (platelet-activating factor acetylhydrolase in humans) [Lipid transport and metabolism]
Probab=99.01 E-value=7.6e-09 Score=93.01 Aligned_cols=189 Identities=13% Similarity=0.180 Sum_probs=119.6
Q ss_pred CCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCch--------------hhHHH--HhhccC
Q 008873 326 PPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGL--------------KFEAS--IKHNCG 389 (550)
Q Consensus 326 ~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~--------------~~~~~--~~~~~~ 389 (550)
.|+|+|||-||-++++.+ +..+.-.||++||+|.++.+|-....-. +|... +..+-.
T Consensus 116 ~k~PvvvFSHGLggsRt~-------YSa~c~~LAShG~VVaavEHRD~SA~~Ty~~~~~~~n~~lveq~~~ir~v~~~ek 188 (399)
T KOG3847|consen 116 DKYPVVVFSHGLGGSRTL-------YSAYCTSLASHGFVVAAVEHRDRSACWTYVLKEKHENEPLVEQWIKIRLVEANEK 188 (399)
T ss_pred CCccEEEEecccccchhh-------HHHHhhhHhhCceEEEEeecccCcceeEEEecccccCCcccccceEeeeeccCce
Confidence 799999999998787764 3335678999999999999997532110 00000 000000
Q ss_pred ---------CCchHHHHHHHHHHHHc---------------------CCCCCCceEEEEechhHHHHHHHHhhCCCeeEE
Q 008873 390 ---------RIDAEDQLTGAEWLIKQ---------------------GLAKVGHIGLYGWSYGGYLSAITLARFPDVFQC 439 (550)
Q Consensus 390 ---------~~~~~D~~~~~~~l~~~---------------------~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~ 439 (550)
..-.+++..|++-|.+. +.+|..+++|+|||+||..++.+.+.+ ..|+|
T Consensus 189 ef~irNeqv~~R~~Ec~~aL~il~~i~~g~~~~~~L~g~~~~~~~~K~nl~~s~~aViGHSFGgAT~i~~ss~~-t~Frc 267 (399)
T KOG3847|consen 189 EFHIRNEQVGQRAQECQKALKILEQINDGGTPDNVLPGNNSDLEQLKGNLDTSQAAVIGHSFGGATSIASSSSH-TDFRC 267 (399)
T ss_pred eEEeeCHHHHHHHHHHHHHHHHHHHhhcCCCchhcccCccccHHHHhcchhhhhhhheeccccchhhhhhhccc-cceee
Confidence 00134555555544331 246778899999999999999888864 56899
Q ss_pred EEEcCCcCCcccccchhhhhccCCCCCCccccccCChhhhhhcCCCcEEEEecCCCCCCChHHHHHHHHHHHHcCCCeEE
Q 008873 440 AVSGAPVTSWDGYDTFYTEKYMGLPSEDPVGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEI 519 (550)
Q Consensus 440 ~v~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~ 519 (550)
+|+..+.. .|-+ -.+..+++-|+|+|.-+ |- -..++....+++...+..-.+
T Consensus 268 aI~lD~WM---------------~Pl~----------~~~~~~arqP~~finv~-~f--Q~~en~~vmKki~~~n~g~~~ 319 (399)
T KOG3847|consen 268 AIALDAWM---------------FPLD----------QLQYSQARQPTLFINVE-DF--QWNENLLVMKKIESQNEGNHV 319 (399)
T ss_pred eeeeeeee---------------cccc----------hhhhhhccCCeEEEEcc-cc--cchhHHHHHHhhhCCCccceE
Confidence 99865320 0110 13456677899998833 22 233556666777666666678
Q ss_pred EEcCCCCCcC-C---------------------CCCcHHHHHHHHHHHHHHhC
Q 008873 520 LIFPDERHMP-R---------------------RHRDRIYMEERIWEFIERTL 550 (550)
Q Consensus 520 ~~~p~~~H~~-~---------------------~~~~~~~~~~~~~~fl~~~l 550 (550)
+++.|+=|.- . ..+..+...+..++||++|+
T Consensus 320 it~~GsVHqnfsDfpfv~p~~i~k~f~~kg~~dpy~~~~~~~r~slaFLq~h~ 372 (399)
T KOG3847|consen 320 ITLDGSVHQNFSDFPFVTPNWIGKVFKVKGETDPYEAMQIAIRASLAFLQKHL 372 (399)
T ss_pred EEEccceecccccCccccHHHHHHHhccCCCCChHHHHHHHHHHHHHHHHhhh
Confidence 8888888841 1 01234556778899998875
No 150
>COG2272 PnbA Carboxylesterase type B [Lipid metabolism]
Probab=99.01 E-value=7.6e-10 Score=106.92 Aligned_cols=130 Identities=18% Similarity=0.231 Sum_probs=88.2
Q ss_pred EEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCC-cEEEEECCCCC-CCC-chhhHHHHhhc
Q 008873 311 LYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKG-ILVWKLDNRGT-ARR-GLKFEASIKHN 387 (550)
Q Consensus 311 l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G-~~vv~~d~rG~-g~~-~~~~~~~~~~~ 387 (550)
|...++.|... .++.|||||+|||..... ....+.++ ...|+++| ++||++|||-. -|+ ...........
T Consensus 80 L~LNIwaP~~~---a~~~PVmV~IHGG~y~~G--s~s~~~yd--gs~La~~g~vVvVSvNYRLG~lGfL~~~~~~~~~~~ 152 (491)
T COG2272 80 LYLNIWAPEVP---AEKLPVMVYIHGGGYIMG--SGSEPLYD--GSALAARGDVVVVSVNYRLGALGFLDLSSLDTEDAF 152 (491)
T ss_pred eeEEeeccCCC---CCCCcEEEEEeccccccC--CCcccccC--hHHHHhcCCEEEEEeCcccccceeeehhhccccccc
Confidence 77788899822 267899999999865422 22222232 56788888 99999999942 111 10000000111
Q ss_pred cCCCchHHHHHHHHHHHHc---CCCCCCceEEEEechhHHHHHHHHhhCCC---eeEEEEEcCCcCC
Q 008873 388 CGRIDAEDQLTGAEWLIKQ---GLAKVGHIGLYGWSYGGYLSAITLARFPD---VFQCAVSGAPVTS 448 (550)
Q Consensus 388 ~~~~~~~D~~~~~~~l~~~---~~~d~~~i~i~G~S~GG~~a~~~~~~~~~---~~~~~v~~~~~~~ 448 (550)
....-+.|++.+++|+.+. ..-|+++|.|+|.|.||+.++.+++. |. +|+-+|+.+|...
T Consensus 153 ~~n~Gl~DqilALkWV~~NIe~FGGDp~NVTl~GeSAGa~si~~Lla~-P~AkGLF~rAi~~Sg~~~ 218 (491)
T COG2272 153 ASNLGLLDQILALKWVRDNIEAFGGDPQNVTLFGESAGAASILTLLAV-PSAKGLFHRAIALSGAAS 218 (491)
T ss_pred cccccHHHHHHHHHHHHHHHHHhCCCccceEEeeccchHHHHHHhhcC-ccchHHHHHHHHhCCCCC
Confidence 1223489999999999875 34599999999999999999988874 53 6777888777654
No 151
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=99.00 E-value=1.3e-07 Score=95.68 Aligned_cols=221 Identities=14% Similarity=0.095 Sum_probs=135.9
Q ss_pred eEEEcCCCCeEEEEEEeCCCCCeEEEeecCCCCCCCCCcccccCCCCCCCCCeEEEEEEECCCCceE-EEEcccCCCCCC
Q 008873 6 GYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVS-WMDLQCGGTDQN 84 (550)
Q Consensus 6 ~~~wSPdg~~lay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~-~l~~~~~~~~~~ 84 (550)
.+.|++||+.+.|++.+...... ..+....|+.+.+.++... .+-+.. .
T Consensus 174 ~~~W~~d~~~~~y~~~~~~~~~~-------------------------~~~~~~~v~~~~~gt~~~~d~lvfe~-----~ 223 (414)
T PF02897_consen 174 SVSWSDDGKGFFYTRFDEDQRTS-------------------------DSGYPRQVYRHKLGTPQSEDELVFEE-----P 223 (414)
T ss_dssp EEEECTTSSEEEEEECSTTTSS--------------------------CCGCCEEEEEEETTS-GGG-EEEEC------T
T ss_pred eEEEeCCCCEEEEEEeCcccccc-------------------------cCCCCcEEEEEECCCChHhCeeEEee-----c
Confidence 48999999999999987643110 0111246788888876543 222210 1
Q ss_pred CCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCC-----ceEEEEEeecCceeeccCccccCCCCCccCCCcEEE
Q 008873 85 YDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTG-----QRKVILVEELDSWVNLHDCFTPLDKGVTKYSGGFIW 159 (550)
Q Consensus 85 ~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g-----~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (550)
+.......+.+|+||++++....+....+++|++++..+ +.+.|........... ...++.+++
T Consensus 224 ~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v-----------~~~~~~~yi 292 (414)
T PF02897_consen 224 DEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYV-----------DHHGDRLYI 292 (414)
T ss_dssp TCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEE-----------EEETTEEEE
T ss_pred CCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEE-----------EccCCEEEE
Confidence 112225678899999987776666655689999999986 5677665433322111 112455777
Q ss_pred EEccCC-ccEEEEEeCCCce---ee-cccccCeEEEEEEeEeecCCEEEEEEcCCCCceeEEEEEEeCCC-CCCCCCCCe
Q 008873 160 ASEKTG-FRHLYLHDINGTC---LG-PITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPD-WNHTLEAPV 233 (550)
Q Consensus 160 ~s~~~g-~~~l~~~~~~~~~---~~-~lT~~~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~~v~~~~~-g~~~~~~~~ 233 (550)
.++.++ +..|+.++++... .+ .|......+. +..++..+++|++....++ ...|..+++ . +. ...
T Consensus 293 ~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~-l~~~~~~~~~Lvl~~~~~~--~~~l~v~~~--~~~~----~~~ 363 (414)
T PF02897_consen 293 LTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVS-LEDVSLFKDYLVLSYRENG--SSRLRVYDL--DDGK----ESR 363 (414)
T ss_dssp EE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEE-EEEEEEETTEEEEEEEETT--EEEEEEEET--T-TE----EEE
T ss_pred eeCCCCCCcEEEEecccccccccceeEEcCCCCcee-EEEEEEECCEEEEEEEECC--ccEEEEEEC--CCCc----EEe
Confidence 777643 6799999976643 22 3444333211 2246677889999988776 478888888 4 32 222
Q ss_pred eeCC-CCc-eEEEEECCCCCEEEEeecCCCCCCEEEEEEcCCCce
Q 008873 234 KLTN-GKG-KHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSL 276 (550)
Q Consensus 234 ~lt~-~~~-~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~~ 276 (550)
.+.. ..+ .......+++..+.|.+++..+|+.+|.+|+.+++.
T Consensus 364 ~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~ 408 (414)
T PF02897_consen 364 EIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGEL 408 (414)
T ss_dssp EEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCE
T ss_pred eecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCE
Confidence 3322 223 344455688899999999999999999999998874
No 152
>KOG2112 consensus Lysophospholipase [Lipid transport and metabolism]
Probab=99.00 E-value=1.7e-08 Score=86.46 Aligned_cols=116 Identities=21% Similarity=0.268 Sum_probs=85.7
Q ss_pred CCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCcccccchhhhhccCCCCCCccccccCChhhhhhcCCCc
Q 008873 407 GLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTFYTEKYMGLPSEDPVGYEYSSVMHHVHKMKGK 486 (550)
Q Consensus 407 ~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~P 486 (550)
..++.+||+|-|.|+||.++++++..++....+.....+...... . +.+. +. + ..+ ..|
T Consensus 88 ~Gi~~~rI~igGfs~G~a~aL~~~~~~~~~l~G~~~~s~~~p~~~------~---~~~~-----~~---~--~~~--~~~ 146 (206)
T KOG2112|consen 88 NGIPSNRIGIGGFSQGGALALYSALTYPKALGGIFALSGFLPRAS------I---GLPG-----WL---P--GVN--YTP 146 (206)
T ss_pred cCCCccceeEcccCchHHHHHHHHhccccccceeeccccccccch------h---hccC-----Cc---c--ccC--cch
Confidence 457899999999999999999999988666555555554422100 0 0000 00 0 000 679
Q ss_pred EEEEecCCCCCCChHHHHHHHHHHHHcCCCeEEEEcCCCCCcCCCCCcHHHHHHHHHHHHHH
Q 008873 487 LLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIER 548 (550)
Q Consensus 487 ~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p~~~H~~~~~~~~~~~~~~~~~fl~~ 548 (550)
++..||+.|+.||..-..+..+.|+..+..+++..|++-+|.... +-+..+..|+.+
T Consensus 147 i~~~Hg~~d~~vp~~~g~~s~~~l~~~~~~~~f~~y~g~~h~~~~-----~e~~~~~~~~~~ 203 (206)
T KOG2112|consen 147 ILLCHGTADPLVPFRFGEKSAQFLKSLGVRVTFKPYPGLGHSTSP-----QELDDLKSWIKT 203 (206)
T ss_pred hheecccCCceeehHHHHHHHHHHHHcCCceeeeecCCccccccH-----HHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999998733 334667777765
No 153
>PF06821 Ser_hydrolase: Serine hydrolase; InterPro: IPR010662 This family contains a number of hypothetical bacterial proteins of unknown function, which may be cytosolic. The Crystal Structure Of The Yden Gene Product Swiss:P96671 from B. Subtilis has been solved. The structure shows an alpha-beta hydrolase fold suggesting an enzymatic function for these proteins [].; GO: 0016787 hydrolase activity; PDB: 3BDV_B 2QS9_A 1UXO_A.
Probab=98.98 E-value=8.9e-09 Score=88.79 Aligned_cols=152 Identities=18% Similarity=0.104 Sum_probs=89.6
Q ss_pred EEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCchhhHHHHhhccCCCchHHHHHHHHHHHHc-CCC
Q 008873 331 LISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQ-GLA 409 (550)
Q Consensus 331 vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~-~~~ 409 (550)
|+++||..++.. +.|. ..+.+.|.+. +.|-.++.- .-++.+-+..|.+. ..+
T Consensus 1 v~IvhG~~~s~~--~HW~---~wl~~~l~~~-~~V~~~~~~---------------------~P~~~~W~~~l~~~i~~~ 53 (171)
T PF06821_consen 1 VLIVHGYGGSPP--DHWQ---PWLERQLENS-VRVEQPDWD---------------------NPDLDEWVQALDQAIDAI 53 (171)
T ss_dssp EEEE--TTSSTT--TSTH---HHHHHHHTTS-EEEEEC--T---------------------S--HHHHHHHHHHCCHC-
T ss_pred CEEeCCCCCCCc--cHHH---HHHHHhCCCC-eEEeccccC---------------------CCCHHHHHHHHHHHHhhc
Confidence 577899655532 4453 2235566566 777777761 11233333344433 223
Q ss_pred CCCceEEEEechhHHHHHHHH-hhCCCeeEEEEEcCCcCCcccccchhhhhccCCCCCCccccccCChhhhhhcCCCcEE
Q 008873 410 KVGHIGLYGWSYGGYLSAITL-ARFPDVFQCAVSGAPVTSWDGYDTFYTEKYMGLPSEDPVGYEYSSVMHHVHKMKGKLL 488 (550)
Q Consensus 410 d~~~i~i~G~S~GG~~a~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~P~l 488 (550)
| +.+.++|||.|+..++.++ .....+++++++++|+..-. .. .. ........+. ....+..|.+
T Consensus 54 ~-~~~ilVaHSLGc~~~l~~l~~~~~~~v~g~lLVAp~~~~~--------~~-~~----~~~~~~f~~~-p~~~l~~~~~ 118 (171)
T PF06821_consen 54 D-EPTILVAHSLGCLTALRWLAEQSQKKVAGALLVAPFDPDD--------PE-PF----PPELDGFTPL-PRDPLPFPSI 118 (171)
T ss_dssp T-TTEEEEEETHHHHHHHHHHHHTCCSSEEEEEEES--SCGC--------HH-CC----TCGGCCCTTS-HCCHHHCCEE
T ss_pred C-CCeEEEEeCHHHHHHHHHHhhcccccccEEEEEcCCCccc--------cc-ch----hhhccccccC-cccccCCCeE
Confidence 3 4589999999999999999 66678999999999974310 00 00 0001111111 1122345669
Q ss_pred EEecCCCCCCChHHHHHHHHHHHHcCCCeEEEEcCCCCCcC
Q 008873 489 LVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMP 529 (550)
Q Consensus 489 ii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p~~~H~~ 529 (550)
++.+++|+.+|+..+.++.+++ ..+++.++++||..
T Consensus 119 viaS~nDp~vp~~~a~~~A~~l-----~a~~~~~~~~GHf~ 154 (171)
T PF06821_consen 119 VIASDNDPYVPFERAQRLAQRL-----GAELIILGGGGHFN 154 (171)
T ss_dssp EEEETTBSSS-HHHHHHHHHHH-----T-EEEEETS-TTSS
T ss_pred EEEcCCCCccCHHHHHHHHHHc-----CCCeEECCCCCCcc
Confidence 9999999999999999999988 45789999999975
No 154
>COG2021 MET2 Homoserine acetyltransferase [Amino acid transport and metabolism]
Probab=98.98 E-value=3.7e-08 Score=92.05 Aligned_cols=218 Identities=16% Similarity=0.074 Sum_probs=129.6
Q ss_pred CCceEEEEEcCCCCceeecccccccchhHhHHH-------HhCCcEEEEECCCCCC-CCchh-hHHHH----hhccCCCc
Q 008873 326 PPYKTLISVYGGPCVQLVCDSWINTVDMRAQYL-------RSKGILVWKLDNRGTA-RRGLK-FEASI----KHNCGRID 392 (550)
Q Consensus 326 ~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l-------~~~G~~vv~~d~rG~g-~~~~~-~~~~~----~~~~~~~~ 392 (550)
.+-.+|+++|+-.+++.........-..+.+.+ .-.-|-|+++|.-|+. |+... -.... -.++....
T Consensus 49 ~~~NaVli~HaLtG~~h~~~~~~~~~~GWW~~liGpG~~iDt~r~fvIc~NvlG~c~GStgP~s~~p~g~~yg~~FP~~t 128 (368)
T COG2021 49 EKDNAVLICHALTGDSHAAGTADDGEKGWWDDLIGPGKPIDTERFFVICTNVLGGCKGSTGPSSINPGGKPYGSDFPVIT 128 (368)
T ss_pred cCCceEEEeccccCcccccccCCCCCCccHHHhcCCCCCCCccceEEEEecCCCCCCCCCCCCCcCCCCCccccCCCccc
Confidence 345799999997665544332111100012223 3345999999999875 33221 11111 12345567
Q ss_pred hHHHHHHHHHHHHcCCCCCCceE-EEEechhHHHHHHHHhhCCCeeEEEEEcCCcCC---------------------cc
Q 008873 393 AEDQLTGAEWLIKQGLAKVGHIG-LYGWSYGGYLSAITLARFPDVFQCAVSGAPVTS---------------------WD 450 (550)
Q Consensus 393 ~~D~~~~~~~l~~~~~~d~~~i~-i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~---------------------~~ 450 (550)
++|++.+-+.|.++-.| +++. ++|.||||+.++..+..+|+++..++.++...- |.
T Consensus 129 i~D~V~aq~~ll~~LGI--~~l~avvGgSmGGMqaleWa~~yPd~V~~~i~ia~~~r~s~~~ia~~~~~r~AI~~DP~~n 206 (368)
T COG2021 129 IRDMVRAQRLLLDALGI--KKLAAVVGGSMGGMQALEWAIRYPDRVRRAIPIATAARLSAQNIAFNEVQRQAIEADPDWN 206 (368)
T ss_pred HHHHHHHHHHHHHhcCc--ceEeeeeccChHHHHHHHHHHhChHHHhhhheecccccCCHHHHHHHHHHHHHHHhCCCcc
Confidence 89999998888776434 4555 999999999999999999998887777665321 10
Q ss_pred ---ccc----------------------chhhhhccCC----CC------CCcccc------------------------
Q 008873 451 ---GYD----------------------TFYTEKYMGL----PS------EDPVGY------------------------ 471 (550)
Q Consensus 451 ---~~~----------------------~~~~~~~~g~----~~------~~~~~~------------------------ 471 (550)
++. ..+.+++-.. +. ...+.|
T Consensus 207 ~G~Y~~~~~P~~GL~~AR~l~~ltYrS~~~~~~rF~r~~~~~~~~~~~~~f~vESYL~~qg~kf~~rfDaNsYL~lt~al 286 (368)
T COG2021 207 GGDYYEGTQPERGLRLARMLAHLTYRSEEELDERFGRRLQADPLRGGGVRFAVESYLDYQGDKFVARFDANSYLYLTRAL 286 (368)
T ss_pred CCCccCCCCcchhHHHHHHHHHHHccCHHHHHHHhcccccccccCCCchhHHHHHHHHHHHHHHHhccCcchHHHHHHHH
Confidence 000 0011111110 00 000111
Q ss_pred cc-------CChhhhhhcCCCcEEEEecCCCCCCChHHHHHHHHHHHHcCCCeEEEEcCCCCCcCCCCCcHHHHHHHHHH
Q 008873 472 EY-------SSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWE 544 (550)
Q Consensus 472 ~~-------~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p~~~H~~~~~~~~~~~~~~~~~ 544 (550)
.. .+....++++++|+|++--+.|-..|+++..++.++|...+. -..+-...||.-.- .....+...+..
T Consensus 287 d~~D~s~~~~~l~~al~~i~~~~lv~gi~sD~lfp~~~~~~~~~~L~~~~~--~~~i~S~~GHDaFL-~e~~~~~~~i~~ 363 (368)
T COG2021 287 DYHDVSRGRGDLTAALARIKAPVLVVGITSDWLFPPELQRALAEALPAAGA--LREIDSPYGHDAFL-VESEAVGPLIRK 363 (368)
T ss_pred HhcCCCCCcCcHHHHHhcCccCEEEEEecccccCCHHHHHHHHHhccccCc--eEEecCCCCchhhh-cchhhhhHHHHH
Confidence 00 122334777999999999999999999999999999977665 22333456886322 223345577788
Q ss_pred HHHH
Q 008873 545 FIER 548 (550)
Q Consensus 545 fl~~ 548 (550)
||+.
T Consensus 364 fL~~ 367 (368)
T COG2021 364 FLAL 367 (368)
T ss_pred Hhhc
Confidence 8764
No 155
>PF07224 Chlorophyllase: Chlorophyllase; InterPro: IPR010821 This family consists of several chlorophyllase proteins (3.1.1.14 from EC). Chlorophyllase (Chlase) is the first enzyme involved in chlorophyll degradation and catalyses the hydrolysis of the ester bond to yield chlorophyllide and phytol [, , ].; GO: 0047746 chlorophyllase activity, 0015996 chlorophyll catabolic process
Probab=98.93 E-value=2.3e-08 Score=88.03 Aligned_cols=180 Identities=15% Similarity=0.129 Sum_probs=113.4
Q ss_pred EEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCchhhHHHHhhccC
Q 008873 310 VLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCG 389 (550)
Q Consensus 310 ~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~~~~~~~~~~~~ 389 (550)
..+..++.|... +.||+|+++||..-. +. .+....+.++++||+|++|+.-..-. .-+
T Consensus 32 PkpLlI~tP~~~----G~yPVilF~HG~~l~----ns---~Ys~lL~HIASHGfIVVAPQl~~~~~-----------p~~ 89 (307)
T PF07224_consen 32 PKPLLIVTPSEA----GTYPVILFLHGFNLY----NS---FYSQLLAHIASHGFIVVAPQLYTLFP-----------PDG 89 (307)
T ss_pred CCCeEEecCCcC----CCccEEEEeechhhh----hH---HHHHHHHHHhhcCeEEEechhhcccC-----------CCc
Confidence 456677888764 789999999995322 11 23335677889999999999764311 123
Q ss_pred CCchHHHHHHHHHHHHc-----C---CCCCCceEEEEechhHHHHHHHHhhCC-C-eeEEEEEcCCcCCcccccchhhhh
Q 008873 390 RIDAEDQLTGAEWLIKQ-----G---LAKVGHIGLYGWSYGGYLSAITLARFP-D-VFQCAVSGAPVTSWDGYDTFYTEK 459 (550)
Q Consensus 390 ~~~~~D~~~~~~~l~~~-----~---~~d~~~i~i~G~S~GG~~a~~~~~~~~-~-~~~~~v~~~~~~~~~~~~~~~~~~ 459 (550)
..++++..+.++||.+. + ..+..+++++|||.||..|..+|..+. + .|.++|-+.|+.......
T Consensus 90 ~~Ei~~aa~V~~WL~~gL~~~Lp~~V~~nl~klal~GHSrGGktAFAlALg~a~~lkfsaLIGiDPV~G~~k~~------ 163 (307)
T PF07224_consen 90 QDEIKSAASVINWLPEGLQHVLPENVEANLSKLALSGHSRGGKTAFALALGYATSLKFSALIGIDPVAGTSKGK------ 163 (307)
T ss_pred hHHHHHHHHHHHHHHhhhhhhCCCCcccccceEEEeecCCccHHHHHHHhcccccCchhheecccccCCCCCCC------
Confidence 34577788889998763 1 256789999999999999999998763 2 588888888875432110
Q ss_pred ccCCCCCCccccccCChhhhhhcCCCcEEEEecCCC-------CCCCh--HHHHHHHHHHHHcCCCeEEEEcCCCCCc
Q 008873 460 YMGLPSEDPVGYEYSSVMHHVHKMKGKLLLVHGMID-------ENVHF--RHTARLINALVAARKPYEILIFPDERHM 528 (550)
Q Consensus 460 ~~g~~~~~~~~~~~~~~~~~~~~i~~P~lii~G~~D-------~~v~~--~~~~~~~~~l~~~~~~~~~~~~p~~~H~ 528 (550)
+..+..+ .+.| +.=++..|+++|-..-- ..+.+ -+-.++++.++ .+...++-.+-||.
T Consensus 164 -----~t~P~iL-ty~p--~SF~l~iPv~VIGtGLg~~~~~~~~~CaP~gvnH~eFf~eCk---~p~~hfV~~dYGHm 230 (307)
T PF07224_consen 164 -----QTPPPIL-TYVP--QSFDLDIPVLVIGTGLGPKRNPLFPPCAPDGVNHEEFFNECK---PPCAHFVAKDYGHM 230 (307)
T ss_pred -----CCCCCee-ecCC--cccccCCceEEEecCcCccccCCCCCCCCCCcCHHHHHHhhc---ccceeeeecccccc
Confidence 0111110 0001 11134578888764333 11112 24567777763 56666677777886
No 156
>cd00707 Pancreat_lipase_like Pancreatic lipase-like enzymes. Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation," the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site.
Probab=98.92 E-value=7.4e-09 Score=97.34 Aligned_cols=112 Identities=16% Similarity=0.199 Sum_probs=76.8
Q ss_pred CceEEEEEcCCCCceeecccccccchhHhH-HHHhCCcEEEEECCCCCCCCchhhHHHHhhccCCCchHHHHHHHHHHHH
Q 008873 327 PYKTLISVYGGPCVQLVCDSWINTVDMRAQ-YLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIK 405 (550)
Q Consensus 327 ~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~-~l~~~G~~vv~~d~rG~g~~~~~~~~~~~~~~~~~~~~D~~~~~~~l~~ 405 (550)
..|++|++||..+... ..|. ..+.+ ++...++.|+++|+++..... +...... . ....+++...+++|.+
T Consensus 35 ~~p~vilIHG~~~~~~--~~~~---~~l~~~ll~~~~~nVi~vD~~~~~~~~--y~~a~~~-~-~~v~~~la~~l~~L~~ 105 (275)
T cd00707 35 SRPTRFIIHGWTSSGE--ESWI---SDLRKAYLSRGDYNVIVVDWGRGANPN--YPQAVNN-T-RVVGAELAKFLDFLVD 105 (275)
T ss_pred CCCcEEEEcCCCCCCC--CcHH---HHHHHHHHhcCCCEEEEEECccccccC--hHHHHHh-H-HHHHHHHHHHHHHHHH
Confidence 4588999999655431 2221 11233 445578999999999863221 1111110 0 0113567788888887
Q ss_pred cCCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcC
Q 008873 406 QGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVT 447 (550)
Q Consensus 406 ~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~ 447 (550)
+..++.++|.++|||+||+++..++.+.+++++.++...|..
T Consensus 106 ~~g~~~~~i~lIGhSlGa~vAg~~a~~~~~~v~~iv~LDPa~ 147 (275)
T cd00707 106 NTGLSLENVHLIGHSLGAHVAGFAGKRLNGKLGRITGLDPAG 147 (275)
T ss_pred hcCCChHHEEEEEecHHHHHHHHHHHHhcCccceeEEecCCc
Confidence 655677899999999999999999999999999999988764
No 157
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=98.89 E-value=6e-07 Score=90.72 Aligned_cols=215 Identities=16% Similarity=0.181 Sum_probs=124.0
Q ss_pred ceEEEcCCCCeEEEEEEeCCCCCeEEEeecCCCCCCCCCcccccCCCCCCCCCeEEEEEEECCCCceEEEEcccCCCCCC
Q 008873 5 TGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQN 84 (550)
Q Consensus 5 ~~~~wSPdg~~lay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~ 84 (550)
..+.+||||++|||.....+. ....|+++|+++|+...-.+.
T Consensus 127 ~~~~~Spdg~~la~~~s~~G~-------------------------------e~~~l~v~Dl~tg~~l~d~i~------- 168 (414)
T PF02897_consen 127 GGFSVSPDGKRLAYSLSDGGS-------------------------------EWYTLRVFDLETGKFLPDGIE------- 168 (414)
T ss_dssp EEEEETTTSSEEEEEEEETTS-------------------------------SEEEEEEEETTTTEEEEEEEE-------
T ss_pred eeeeECCCCCEEEEEecCCCC-------------------------------ceEEEEEEECCCCcCcCCccc-------
Confidence 357799999999998655332 135789999999976532221
Q ss_pred CCCceeEEEEECCCCeEEEEEEecC-CC------ceEEEEEECCCCce--EEEEEeecCc--eeeccCccccCCCCCccC
Q 008873 85 YDEEYLARVNWMHGNILTAQVLNRS-QT------KLKVLKFDIKTGQR--KVILVEELDS--WVNLHDCFTPLDKGVTKY 153 (550)
Q Consensus 85 ~~~~~~~~~~wspDg~~i~~~~~r~-~~------~~~l~~~~~~~g~~--~~l~~~~~~~--~~~~~~~~~~~~~~~~~~ 153 (550)
.....++.|++||+.+++..... .. ..+||...+.++.. +.|..+.... +... ..+
T Consensus 169 --~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~-----------~~s 235 (414)
T PF02897_consen 169 --NPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSV-----------SRS 235 (414)
T ss_dssp --EEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEE-----------EE-
T ss_pred --ccccceEEEeCCCCEEEEEEeCcccccccCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEE-----------Eec
Confidence 11223389999999776664333 34 67899999988754 4666654432 2221 123
Q ss_pred CC-cEEEEEcc-CCc-cEEEEEeCCCc-----eeecccccCeEEEEEEeEeecCCEEEEEEcCCCCceeEEEEEEeCCCC
Q 008873 154 SG-GFIWASEK-TGF-RHLYLHDINGT-----CLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDW 225 (550)
Q Consensus 154 ~~-~~~~~s~~-~g~-~~l~~~~~~~~-----~~~~lT~~~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~~v~~~~~g 225 (550)
.| ++++++.. ... ..+|++++..+ +.+.|....-.+... +...|+.+|+.++.+.+ ...|+++++.. .
T Consensus 236 ~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~--v~~~~~~~yi~Tn~~a~-~~~l~~~~l~~-~ 311 (414)
T PF02897_consen 236 KDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYY--VDHHGDRLYILTNDDAP-NGRLVAVDLAD-P 311 (414)
T ss_dssp TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEE--EEEETTEEEEEE-TT-T-T-EEEEEETTS-T
T ss_pred CcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEE--EEccCCEEEEeeCCCCC-CcEEEEecccc-c
Confidence 44 36665433 334 79999998764 566776532222211 33347889999996554 58899999832 1
Q ss_pred CCCCCCCeeeCCCCceEEEEECCCCCEEEEeecCCCCCCEEEEEEcCCCc
Q 008873 226 NHTLEAPVKLTNGKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGS 275 (550)
Q Consensus 226 ~~~~~~~~~lt~~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~ 275 (550)
.........+...++..-..++..+++|++.... +.-++|.++++..+.
T Consensus 312 ~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~-~~~~~l~v~~~~~~~ 360 (414)
T PF02897_consen 312 SPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRE-NGSSRLRVYDLDDGK 360 (414)
T ss_dssp SGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEE-TTEEEEEEEETT-TE
T ss_pred ccccceeEEcCCCCceeEEEEEEECCEEEEEEEE-CCccEEEEEECCCCc
Confidence 1000011223333332223455566778777665 344699999985244
No 158
>KOG1553 consensus Predicted alpha/beta hydrolase BAT5 [General function prediction only]
Probab=98.87 E-value=4.8e-09 Score=95.35 Aligned_cols=184 Identities=18% Similarity=0.167 Sum_probs=117.2
Q ss_pred CeEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCc
Q 008873 298 PDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRG 377 (550)
Q Consensus 298 ~~~~~~~~~~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~ 377 (550)
-++..+++.||.+|...++.-.....+ ....+||.+-|..+...+. ....=++.||.|+..|++|.+++.
T Consensus 214 G~R~kiks~dgneiDtmF~d~r~n~~~-ngq~LvIC~EGNAGFYEvG---------~m~tP~~lgYsvLGwNhPGFagST 283 (517)
T KOG1553|consen 214 GQRLKIKSSDGNEIDTMFLDGRPNQSG-NGQDLVICFEGNAGFYEVG---------VMNTPAQLGYSVLGWNHPGFAGST 283 (517)
T ss_pred CeEEEEeecCCcchhheeecCCCCCCC-CCceEEEEecCCccceEee---------eecChHHhCceeeccCCCCccccC
Confidence 467788889999888887754432222 2346888888865544332 123345789999999999987764
Q ss_pred hhhHHHHhhccCCCchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCcccccchh-
Q 008873 378 LKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTFY- 456 (550)
Q Consensus 378 ~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~- 456 (550)
.... ...+...+.+.+++.++.-...++.|+|.|||.||+-++++|..+|+. +++|+-+.+-|........
T Consensus 284 G~P~-------p~n~~nA~DaVvQfAI~~Lgf~~edIilygWSIGGF~~~waAs~YPdV-kavvLDAtFDDllpLAl~rM 355 (517)
T KOG1553|consen 284 GLPY-------PVNTLNAADAVVQFAIQVLGFRQEDIILYGWSIGGFPVAWAASNYPDV-KAVVLDATFDDLLPLALFRM 355 (517)
T ss_pred CCCC-------cccchHHHHHHHHHHHHHcCCCccceEEEEeecCCchHHHHhhcCCCc-eEEEeecchhhhhhHHhhhc
Confidence 3211 223355566778887776334678899999999999999999999995 9999888776643211100
Q ss_pred hhhccCCCCCCccccccCChhhhhhcCCCcEEEEecCCCCCCC
Q 008873 457 TEKYMGLPSEDPVGYEYSSVMHHVHKMKGKLLLVHGMIDENVH 499 (550)
Q Consensus 457 ~~~~~g~~~~~~~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~ 499 (550)
...+.|.-......+-..+..+.+.+.+.|+++|--++|+++.
T Consensus 356 P~~~~giV~~aiRnh~NLnnaell~ry~GPi~lIRRt~dEIit 398 (517)
T KOG1553|consen 356 PTFFSGIVEHAIRNHMNLNNAELLARYKGPIRLIRRTQDEIIT 398 (517)
T ss_pred hHHHHHHHHHHHHHhcccchHHHHHhhcCchhHhhhhhHhhhh
Confidence 0000000000011122233345667778899999888887653
No 159
>PF09752 DUF2048: Uncharacterized conserved protein (DUF2048); InterPro: IPR019149 This family of proteins has no known function.
Probab=98.85 E-value=4.1e-08 Score=91.74 Aligned_cols=222 Identities=20% Similarity=0.255 Sum_probs=130.7
Q ss_pred EEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCchh--hHHH-----
Q 008873 311 LYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLK--FEAS----- 383 (550)
Q Consensus 311 l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~~--~~~~----- 383 (550)
.+..++.|..- ..++.|++|.+.|.+... |.-+...++.-|.+.|++.+.+..+-+|..-.. ....
T Consensus 77 a~~~~~~P~~~--~~~~rp~~IhLagTGDh~-----f~rR~~l~a~pLl~~gi~s~~le~Pyyg~RkP~~Q~~s~l~~Vs 149 (348)
T PF09752_consen 77 ARFQLLLPKRW--DSPYRPVCIHLAGTGDHG-----FWRRRRLMARPLLKEGIASLILENPYYGQRKPKDQRRSSLRNVS 149 (348)
T ss_pred eEEEEEECCcc--ccCCCceEEEecCCCccc-----hhhhhhhhhhHHHHcCcceEEEecccccccChhHhhcccccchh
Confidence 44556667653 124679999999854432 112334457777888999998876655433211 0000
Q ss_pred HhhccCCCchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCC--------------c
Q 008873 384 IKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTS--------------W 449 (550)
Q Consensus 384 ~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~--------------~ 449 (550)
-.-.+|...+.+....++|+.++++ .+++|.|.||||.+|..+++..|..+.++-+.++.+. |
T Consensus 150 Dl~~~g~~~i~E~~~Ll~Wl~~~G~---~~~g~~G~SmGG~~A~laa~~~p~pv~~vp~ls~~sAs~vFt~Gvls~~i~W 226 (348)
T PF09752_consen 150 DLFVMGRATILESRALLHWLEREGY---GPLGLTGISMGGHMAALAASNWPRPVALVPCLSWSSASVVFTEGVLSNSINW 226 (348)
T ss_pred HHHHHHhHHHHHHHHHHHHHHhcCC---CceEEEEechhHhhHHhhhhcCCCceeEEEeecccCCCcchhhhhhhcCCCH
Confidence 0112334457788888999999864 5999999999999999999998887666655554322 2
Q ss_pred ccccc-----hhhhhccCCCCC--------------Ccccc----ccCChhhhhhcCCC-----cEEEEecCCCCCCChH
Q 008873 450 DGYDT-----FYTEKYMGLPSE--------------DPVGY----EYSSVMHHVHKMKG-----KLLLVHGMIDENVHFR 501 (550)
Q Consensus 450 ~~~~~-----~~~~~~~g~~~~--------------~~~~~----~~~~~~~~~~~i~~-----P~lii~G~~D~~v~~~ 501 (550)
..... .|.+.....+.. +.+.. ....-..++.++.+ .+.++.+++|..||..
T Consensus 227 ~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ea~~~m~~~md~~T~l~nf~~P~dp~~ii~V~A~~DaYVPr~ 306 (348)
T PF09752_consen 227 DALEKQFEDTVYEEEISDIPAQNKSLPLDSMEERRRDREALRFMRGVMDSFTHLTNFPVPVDPSAIIFVAAKNDAYVPRH 306 (348)
T ss_pred HHHHHHhcccchhhhhcccccCcccccchhhccccchHHHHHHHHHHHHhhccccccCCCCCCCcEEEEEecCceEechh
Confidence 11110 111110000000 00000 00111233444443 4678889999999987
Q ss_pred HHHHHHHHHHHcCCCeEEEEcCCCCCcCCCCCcHHHHHHHHHHHHH
Q 008873 502 HTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIE 547 (550)
Q Consensus 502 ~~~~~~~~l~~~~~~~~~~~~p~~~H~~~~~~~~~~~~~~~~~fl~ 547 (550)
+...+.+.. ...++..+++ ||.-..-.+...+-+.|.+=|+
T Consensus 307 ~v~~Lq~~W----PGsEvR~l~g-GHVsA~L~~q~~fR~AI~Daf~ 347 (348)
T PF09752_consen 307 GVLSLQEIW----PGSEVRYLPG-GHVSAYLLHQEAFRQAIYDAFE 347 (348)
T ss_pred hcchHHHhC----CCCeEEEecC-CcEEEeeechHHHHHHHHHHhh
Confidence 766555443 4567777877 9975444556666777777654
No 160
>COG0596 MhpC Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=98.85 E-value=1.4e-07 Score=88.50 Aligned_cols=99 Identities=21% Similarity=0.191 Sum_probs=63.5
Q ss_pred eEEEEEcCCCCceeecccccccchhHhHHHHhC--CcEEEEECCCCCCCCchhhHHHHhhccCCCchHHHHHHHHHHHHc
Q 008873 329 KTLISVYGGPCVQLVCDSWINTVDMRAQYLRSK--GILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQ 406 (550)
Q Consensus 329 P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~--G~~vv~~d~rG~g~~~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~ 406 (550)
|.|+++||.+.... .|.. ....+... .|.|+.+|.||+|.+. .. ..........+..+.++
T Consensus 22 ~~i~~~hg~~~~~~---~~~~----~~~~~~~~~~~~~~~~~d~~g~g~s~-~~---------~~~~~~~~~~~~~~~~~ 84 (282)
T COG0596 22 PPLVLLHGFPGSSS---VWRP----VFKVLPALAARYRVIAPDLRGHGRSD-PA---------GYSLSAYADDLAALLDA 84 (282)
T ss_pred CeEEEeCCCCCchh---hhHH----HHHHhhccccceEEEEecccCCCCCC-cc---------cccHHHHHHHHHHHHHH
Confidence 48899999876543 2211 11222221 1999999999998776 00 00111122333333332
Q ss_pred CCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCc
Q 008873 407 GLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPV 446 (550)
Q Consensus 407 ~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~ 446 (550)
- ...++.++|||+||.+++.++.++|+.+++++..++.
T Consensus 85 ~--~~~~~~l~G~S~Gg~~~~~~~~~~p~~~~~~v~~~~~ 122 (282)
T COG0596 85 L--GLEKVVLVGHSMGGAVALALALRHPDRVRGLVLIGPA 122 (282)
T ss_pred h--CCCceEEEEecccHHHHHHHHHhcchhhheeeEecCC
Confidence 2 2234999999999999999999999999999888754
No 161
>PF00135 COesterase: Carboxylesterase family The prints entry is specific to acetylcholinesterase; InterPro: IPR002018 Higher eukaryotes have many distinct esterases. Among the different types are those which act on carboxylic esters (3.1.1 from EC). Carboxyl-esterases have been classified into three categories (A, B and C) on the basis of differential patterns of inhibition by organophosphates. The sequence of a number of type-B carboxylesterases indicates [, , ] that the majority are evolutionary related. As is the case for lipases and serine proteases, the catalytic apparatus of esterases involves three residues (catalytic triad): a serine, a glutamate or aspartate and a histidine.; PDB: 3B3Q_A 1CLE_B 1GQS_A 2VJD_A 1HBJ_A 2C5G_A 1U65_A 2WG1_A 1FSS_A 3M3D_A ....
Probab=98.85 E-value=6e-09 Score=109.38 Aligned_cols=127 Identities=18% Similarity=0.177 Sum_probs=82.3
Q ss_pred EEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCC--C--CCchhhHHHHhh
Q 008873 311 LYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGT--A--RRGLKFEASIKH 386 (550)
Q Consensus 311 l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~--g--~~~~~~~~~~~~ 386 (550)
|...++.|...... .++||+|++|||....... ..........++.++++||.++||-. | ..+..-. .
T Consensus 109 L~LnI~~P~~~~~~-~~lPV~v~ihGG~f~~G~~---~~~~~~~~~~~~~~~vivVt~nYRlg~~Gfl~~~~~~~---~- 180 (535)
T PF00135_consen 109 LYLNIYTPSNASSN-SKLPVMVWIHGGGFMFGSG---SFPPYDGASLAASKDVIVVTINYRLGAFGFLSLGDLDA---P- 180 (535)
T ss_dssp -EEEEEEETSSSST-TSEEEEEEE--STTTSSCT---TSGGGHTHHHHHHHTSEEEEE----HHHHH-BSSSTTS---H-
T ss_pred HHHhhhhccccccc-cccceEEEeecccccCCCc---ccccccccccccCCCEEEEEeccccccccccccccccc---C-
Confidence 77888999876422 3799999999986654311 00112224567789999999999942 1 1110000 0
Q ss_pred ccCCCchHHHHHHHHHHHHc---CCCCCCceEEEEechhHHHHHHHHhhC--CCeeEEEEEcCCc
Q 008873 387 NCGRIDAEDQLTGAEWLIKQ---GLAKVGHIGLYGWSYGGYLSAITLARF--PDVFQCAVSGAPV 446 (550)
Q Consensus 387 ~~~~~~~~D~~~~~~~l~~~---~~~d~~~i~i~G~S~GG~~a~~~~~~~--~~~~~~~v~~~~~ 446 (550)
.++..+.|+..|++|+.+. -.-|+++|.|+|+|.||..+...+..- ..+|+.+|+.+|.
T Consensus 181 -~gN~Gl~Dq~~AL~WV~~nI~~FGGDp~~VTl~G~SAGa~sv~~~l~sp~~~~LF~raI~~SGs 244 (535)
T PF00135_consen 181 -SGNYGLLDQRLALKWVQDNIAAFGGDPDNVTLFGQSAGAASVSLLLLSPSSKGLFHRAILQSGS 244 (535)
T ss_dssp -BSTHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHGGGGTTSBSEEEEES--
T ss_pred -chhhhhhhhHHHHHHHHhhhhhcccCCcceeeeeecccccccceeeeccccccccccccccccc
Confidence 2444589999999999885 335999999999999999998777642 3689999998883
No 162
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.80 E-value=1.7e-07 Score=88.67 Aligned_cols=125 Identities=18% Similarity=0.229 Sum_probs=90.1
Q ss_pred EEEEEEECCCCceEEEEcccCCCCCCCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCceee
Q 008873 59 VRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVN 138 (550)
Q Consensus 59 ~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~ 138 (550)
..|.++|.++++.+++.- .-+.+..+.-|||||.++...+| .+||++|+++|+++.+...... -+-
T Consensus 382 D~l~iyd~~~~e~kr~e~---------~lg~I~av~vs~dGK~~vvaNdr----~el~vididngnv~~idkS~~~-lIt 447 (668)
T COG4946 382 DKLGIYDKDGGEVKRIEK---------DLGNIEAVKVSPDGKKVVVANDR----FELWVIDIDNGNVRLIDKSEYG-LIT 447 (668)
T ss_pred ceEEEEecCCceEEEeeC---------CccceEEEEEcCCCcEEEEEcCc----eEEEEEEecCCCeeEecccccc-eeE
Confidence 468899999999887732 24567889999999988777544 5799999999999887654322 111
Q ss_pred ccCccccCCCCCccCCCc-EEEEEccCCc--cEEEEEeCCCceeecccccCeEEEEEEeEeecCCEEEEEEcC
Q 008873 139 LHDCFTPLDKGVTKYSGG-FIWASEKTGF--RHLYLHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGTL 208 (550)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~-~~~~s~~~g~--~~l~~~~~~~~~~~~lT~~~~~~~~~~~~s~dg~~l~f~~~~ 208 (550)
. | .|++++ ++..+-..|+ ++|-++|+++++.-.+|...-..-.+ .++|||+.|||.+.+
T Consensus 448 d---f-------~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~ta~DfsP-aFD~d~ryLYfLs~R 509 (668)
T COG4946 448 D---F-------DWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTPTAYDFSP-AFDPDGRYLYFLSAR 509 (668)
T ss_pred E---E-------EEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecCCcccccCc-ccCCCCcEEEEEecc
Confidence 0 1 244444 4444444664 68899999999988888764333344 499999999999985
No 163
>COG3208 GrsT Predicted thioesterase involved in non-ribosomal peptide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.78 E-value=2.3e-07 Score=81.85 Aligned_cols=194 Identities=18% Similarity=0.178 Sum_probs=109.6
Q ss_pred eEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCchhhHHHHhhccCCCchHHHHHHHHHHHHc--
Q 008873 329 KTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQ-- 406 (550)
Q Consensus 329 P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~-- 406 (550)
-++.+-|-|+++.. ...| ...|.. .+.++.+.++|.+..- +.-...|+...++.|...
T Consensus 9 ~L~cfP~AGGsa~~-fr~W-------~~~lp~-~iel~avqlPGR~~r~-----------~ep~~~di~~Lad~la~el~ 68 (244)
T COG3208 9 RLFCFPHAGGSASL-FRSW-------SRRLPA-DIELLAVQLPGRGDRF-----------GEPLLTDIESLADELANELL 68 (244)
T ss_pred eEEEecCCCCCHHH-HHHH-------HhhCCc-hhheeeecCCCccccc-----------CCcccccHHHHHHHHHHHhc
Confidence 45555566654432 2222 333333 5889999999887431 122256667777766654
Q ss_pred CCCCCCceEEEEechhHHHHHHHHhhC------CCeeEEEEEcCCcCCcccc-----cchhhh---hccCCCC---CCcc
Q 008873 407 GLAKVGHIGLYGWSYGGYLSAITLARF------PDVFQCAVSGAPVTSWDGY-----DTFYTE---KYMGLPS---EDPV 469 (550)
Q Consensus 407 ~~~d~~~i~i~G~S~GG~~a~~~~~~~------~~~~~~~v~~~~~~~~~~~-----~~~~~~---~~~g~~~---~~~~ 469 (550)
+..-....+++||||||++|.-+|.+. |..+-...+.+|..+.... +..+.+ .+.|.|. ++++
T Consensus 69 ~~~~d~P~alfGHSmGa~lAfEvArrl~~~g~~p~~lfisg~~aP~~~~~~~i~~~~D~~~l~~l~~lgG~p~e~led~E 148 (244)
T COG3208 69 PPLLDAPFALFGHSMGAMLAFEVARRLERAGLPPRALFISGCRAPHYDRGKQIHHLDDADFLADLVDLGGTPPELLEDPE 148 (244)
T ss_pred cccCCCCeeecccchhHHHHHHHHHHHHHcCCCcceEEEecCCCCCCcccCCccCCCHHHHHHHHHHhCCCChHHhcCHH
Confidence 122235799999999999999888642 2222222223342221110 111111 2234442 2333
Q ss_pred ccccCChh-----------h--hhhcCCCcEEEEecCCCCCCChHHHHHHHHHHHHcCCCeEEEEcCCCCCcCCCCCcHH
Q 008873 470 GYEYSSVM-----------H--HVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRI 536 (550)
Q Consensus 470 ~~~~~~~~-----------~--~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p~~~H~~~~~~~~~ 536 (550)
...-.-|+ . .-..+.+|+.++.|++|..|..++...+.+.. +..+++..|+| +|.+.. ....
T Consensus 149 l~~l~LPilRAD~~~~e~Y~~~~~~pl~~pi~~~~G~~D~~vs~~~~~~W~~~t---~~~f~l~~fdG-gHFfl~-~~~~ 223 (244)
T COG3208 149 LMALFLPILRADFRALESYRYPPPAPLACPIHAFGGEKDHEVSRDELGAWREHT---KGDFTLRVFDG-GHFFLN-QQRE 223 (244)
T ss_pred HHHHHHHHHHHHHHHhcccccCCCCCcCcceEEeccCcchhccHHHHHHHHHhh---cCCceEEEecC-cceehh-hhHH
Confidence 22111111 1 11457799999999999998877666665544 56899999988 898733 4555
Q ss_pred HHHHHHHHHHH
Q 008873 537 YMEERIWEFIE 547 (550)
Q Consensus 537 ~~~~~~~~fl~ 547 (550)
++...+.+.+.
T Consensus 224 ~v~~~i~~~l~ 234 (244)
T COG3208 224 EVLARLEQHLA 234 (244)
T ss_pred HHHHHHHHHhh
Confidence 56666665553
No 164
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.77 E-value=9.3e-06 Score=77.86 Aligned_cols=116 Identities=12% Similarity=0.230 Sum_probs=72.7
Q ss_pred CcEEEEEccCCccEEEEEeCCCceee------ccccc----CeEEE--EEEeEeecCCEEEEEEcCCC-----CceeEEE
Q 008873 155 GGFIWASEKTGFRHLYLHDINGTCLG------PITEG----DWMVE--QIVGVNEASGQVYFTGTLDG-----PLESHLY 217 (550)
Q Consensus 155 ~~~~~~s~~~g~~~l~~~~~~~~~~~------~lT~~----~~~~~--~~~~~s~dg~~l~f~~~~~~-----~~~~~l~ 217 (550)
++.+|+|.. ..|+.+|+.+.+.. .+|.+ .|.-. ++..+++||+++|+...... ....+|+
T Consensus 206 g~~~~vs~e---G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ 282 (352)
T TIGR02658 206 GRLVWPTYT---GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLF 282 (352)
T ss_pred CcEEEEecC---CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEE
Confidence 347777765 57888886554322 22221 22211 23568999999998654211 1235899
Q ss_pred EEEeCCCCCCCCCCCeeeCCCCceEEEEECCCCCEEEEeecCCCCCCEEEEEEcCCCceeEec
Q 008873 218 CAKLYPDWNHTLEAPVKLTNGKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPL 280 (550)
Q Consensus 218 ~v~~~~~g~~~~~~~~~lt~~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~~~~~l 280 (550)
.+|.. .+. ...++.-+.....+.+|||++.++++.+.. ...+.++|..+++.++.+
T Consensus 283 ViD~~-t~k----vi~~i~vG~~~~~iavS~Dgkp~lyvtn~~--s~~VsViD~~t~k~i~~i 338 (352)
T TIGR02658 283 VVDAK-TGK----RLRKIELGHEIDSINVSQDAKPLLYALSTG--DKTLYIFDAETGKELSSV 338 (352)
T ss_pred EEECC-CCe----EEEEEeCCCceeeEEECCCCCeEEEEeCCC--CCcEEEEECcCCeEEeee
Confidence 99983 222 455566566678889999999555655432 236899999888877665
No 165
>TIGR03230 lipo_lipase lipoprotein lipase. Members of this protein family are lipoprotein lipase (EC 3.1.1.34), a eukaryotic triacylglycerol lipase active in plasma and similar to pancreatic and hepatic triacylglycerol lipases (EC 3.1.1.3). It is also called clearing factor. It cleaves chylomicron and VLDL triacylglycerols; it also has phospholipase A-1 activity.
Probab=98.75 E-value=5.3e-08 Score=95.78 Aligned_cols=113 Identities=17% Similarity=0.184 Sum_probs=75.0
Q ss_pred CceEEEEEcCCCCceeecccccccchhHhHHHH-h-CCcEEEEECCCCCCCCchhhHHHHhhccCCCchHHHHHHHHHHH
Q 008873 327 PYKTLISVYGGPCVQLVCDSWINTVDMRAQYLR-S-KGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLI 404 (550)
Q Consensus 327 ~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~-~-~G~~vv~~d~rG~g~~~~~~~~~~~~~~~~~~~~D~~~~~~~l~ 404 (550)
..|++|++||...... ...|... +.+.|. . ..+.|+++|++|.+.+... .+.... .....++.+.+++|.
T Consensus 40 ~~ptvIlIHG~~~s~~-~~~w~~~---l~~al~~~~~d~nVI~VDw~g~g~s~y~--~a~~~t--~~vg~~la~lI~~L~ 111 (442)
T TIGR03230 40 ETKTFIVIHGWTVTGM-FESWVPK---LVAALYEREPSANVIVVDWLSRAQQHYP--TSAAYT--KLVGKDVAKFVNWMQ 111 (442)
T ss_pred CCCeEEEECCCCcCCc-chhhHHH---HHHHHHhccCCCEEEEEECCCcCCCCCc--cccccH--HHHHHHHHHHHHHHH
Confidence 4588999999654321 1223211 233332 2 3699999999998754311 111000 011356777788887
Q ss_pred HcCCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcC
Q 008873 405 KQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVT 447 (550)
Q Consensus 405 ~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~ 447 (550)
++..++.+++.|+||||||+++..++...|.++..++...|..
T Consensus 112 ~~~gl~l~~VhLIGHSLGAhIAg~ag~~~p~rV~rItgLDPAg 154 (442)
T TIGR03230 112 EEFNYPWDNVHLLGYSLGAHVAGIAGSLTKHKVNRITGLDPAG 154 (442)
T ss_pred HhhCCCCCcEEEEEECHHHHHHHHHHHhCCcceeEEEEEcCCC
Confidence 6544677899999999999999999998899999999988763
No 166
>PF03959 FSH1: Serine hydrolase (FSH1); InterPro: IPR005645 This entry represents proteins belonging to the AB hydrolase family. It consists of serine hydrolases of unknown specificity [, ] and includes uncharacterised proteins.; PDB: 1YCD_A.
Probab=98.75 E-value=4.6e-08 Score=88.36 Aligned_cols=175 Identities=16% Similarity=0.081 Sum_probs=87.3
Q ss_pred CceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCC--CCchh---------h-HHHHhhccCC----
Q 008873 327 PYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTA--RRGLK---------F-EASIKHNCGR---- 390 (550)
Q Consensus 327 ~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g--~~~~~---------~-~~~~~~~~~~---- 390 (550)
+++-|+.+||...+..+ |..+...+...|.+.++..+.+|.+-.- +.+.. + .......|..
T Consensus 3 ~k~riLcLHG~~~na~i---f~~q~~~l~~~l~~~~~ef~f~dgP~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~ 79 (212)
T PF03959_consen 3 RKPRILCLHGYGQNAEI---FRQQTSALRKALKKLDFEFVFVDGPHEVPPGPGIEPFSSEAESAFGDPGPFYSWWDPDDD 79 (212)
T ss_dssp ---EEEEE--TT--HHH---HHHHTHHHHHHHHHTT-EEEEE--SEE---GGG-SS---HHHHHHHHTT--EESS---S-
T ss_pred CCceEEEeCCCCcCHHH---HHHHHHHHHHHHhhCcEEEEEecCCcccCCcccccccccccccccCCCCcceeeeecCCC
Confidence 34788999997665442 2233444455665658999999866322 11110 0 0111112222
Q ss_pred -CchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhC--------CCeeEEEEEcCCcCCcccccchhhhhcc
Q 008873 391 -IDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARF--------PDVFQCAVSGAPVTSWDGYDTFYTEKYM 461 (550)
Q Consensus 391 -~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~--------~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 461 (550)
....++.++++++.+.-.-+..-.+|+|+|+||.+|..++... ...|+.+|+.+++......
T Consensus 80 ~~~~~~~~~sl~~l~~~i~~~GPfdGvlGFSQGA~lAa~ll~~~~~~~~~~~~~~~kf~V~~sg~~p~~~~--------- 150 (212)
T PF03959_consen 80 DHEYEGLDESLDYLRDYIEENGPFDGVLGFSQGAALAALLLALQQRGRPDGAHPPFKFAVFISGFPPPDPD--------- 150 (212)
T ss_dssp SGGG---HHHHHHHHHHHHHH---SEEEEETHHHHHHHHHHHHHHHHST--T----SEEEEES----EEE----------
T ss_pred cccccCHHHHHHHHHHHHHhcCCeEEEEeecHHHHHHHHHHHHHHhhcccccCCCceEEEEEcccCCCchh---------
Confidence 2255666666666553100111368999999999998887531 2357888888876431100
Q ss_pred CCCCCCccccccCChhhhhhcCCCcEEEEecCCCCCCChHHHHHHHHHHHHcCCCeEEEEcCCCCCcC
Q 008873 462 GLPSEDPVGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMP 529 (550)
Q Consensus 462 g~~~~~~~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p~~~H~~ 529 (550)
+.. .....++++|+|-++|.+|..++++.+..+++.+... .+++..++ ||.+
T Consensus 151 ---------~~~---~~~~~~i~iPtlHv~G~~D~~~~~~~s~~L~~~~~~~---~~v~~h~g-GH~v 202 (212)
T PF03959_consen 151 ---------YQE---LYDEPKISIPTLHVIGENDPVVPPERSEALAEMFDPD---ARVIEHDG-GHHV 202 (212)
T ss_dssp ---------GTT---TT--TT---EEEEEEETT-SSS-HHHHHHHHHHHHHH---EEEEEESS-SSS-
T ss_pred ---------hhh---hhccccCCCCeEEEEeCCCCCcchHHHHHHHHhccCC---cEEEEECC-CCcC
Confidence 000 1134567899999999999999999999999988664 66777766 7776
No 167
>COG1073 Hydrolases of the alpha/beta superfamily [General function prediction only]
Probab=98.71 E-value=8.9e-08 Score=92.12 Aligned_cols=78 Identities=27% Similarity=0.370 Sum_probs=63.4
Q ss_pred cccCChhhhhhcCC-CcEEEEecCCCCCCChHHHHHHHHHHHHcCCCeEEEEcCCCCCcCCCCCcH--HHHHHHHHHHHH
Q 008873 471 YEYSSVMHHVHKMK-GKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDR--IYMEERIWEFIE 547 (550)
Q Consensus 471 ~~~~~~~~~~~~i~-~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p~~~H~~~~~~~~--~~~~~~~~~fl~ 547 (550)
+...++...+.++. +|+|++||..|..||...+..++.+.... +.+.+.+++++|........ ...+.++.+||.
T Consensus 218 ~~~~d~~~~~~~i~~~P~l~~~G~~D~~vp~~~~~~~~~~~~~~--~~~~~~~~~~~H~~~~~~~~~~~~~~~~~~~f~~ 295 (299)
T COG1073 218 LLLLDPFDDAEKISPRPVLLVHGERDEVVPLRDAEDLYEAARER--PKKLLFVPGGGHIDLYDNPPAVEQALDKLAEFLE 295 (299)
T ss_pred hccCcchhhHhhcCCcceEEEecCCCcccchhhhHHHHhhhccC--CceEEEecCCccccccCccHHHHHHHHHHHHHHH
Confidence 44556666777787 69999999999999999999999987554 67888899999998643333 478999999999
Q ss_pred HhC
Q 008873 548 RTL 550 (550)
Q Consensus 548 ~~l 550 (550)
++|
T Consensus 296 ~~l 298 (299)
T COG1073 296 RHL 298 (299)
T ss_pred Hhc
Confidence 875
No 168
>TIGR01849 PHB_depoly_PhaZ polyhydroxyalkanoate depolymerase, intracellular. This model represents an intracellular depolymerase for polyhydroxyalkanoate (PHA), a carbon and energy storing polyester that accumulates in granules in many bacterial species when carbon sources are abundant but other nutrients are limiting. This family is named for PHAs generally, rather than polyhydroxybutyrate (PHB) specificially as in Ralstonia eutropha H16, to avoid overcalling chemical specificity in other species. Note that this family lacks the classic GXSXG lipase motif and instead shows weak similarity to some
Probab=98.68 E-value=5.2e-07 Score=87.87 Aligned_cols=71 Identities=20% Similarity=0.134 Sum_probs=58.3
Q ss_pred hhhcCC-CcEEEEecCCCCCCChHHHHHHHHHHHHcC-CCeEEEEcCCCCCc--CCCCCcHHHHHHHHHHHHHHh
Q 008873 479 HVHKMK-GKLLLVHGMIDENVHFRHTARLINALVAAR-KPYEILIFPDERHM--PRRHRDRIYMEERIWEFIERT 549 (550)
Q Consensus 479 ~~~~i~-~P~lii~G~~D~~v~~~~~~~~~~~l~~~~-~~~~~~~~p~~~H~--~~~~~~~~~~~~~~~~fl~~~ 549 (550)
++++|+ +|+|.+.|+.|.++|+.++..+.+.+...+ .+.+.+..+++||. |.+...+.+.+..+.+||.++
T Consensus 332 dl~~I~~~pll~V~ge~D~I~p~~qt~aa~~l~~~~~s~~k~~~~~~~~GH~Gvf~G~r~~~~i~P~i~~wl~~~ 406 (406)
T TIGR01849 332 DPGAITRVALLTVEGENDDISGLGQTKAALRLCTGIPEDMKRHHLQPGVGHYGVFSGSRFREEIYPLVREFIRRN 406 (406)
T ss_pred cHHHCcccceEEEeccCCCcCCHHHhHHHHHHhhcCChhhceEeecCCCCeEEEeeChhhhhhhchHHHHHHHhC
Confidence 356688 999999999999999999999988764333 24567778888996 467788889999999999864
No 169
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=98.64 E-value=3.4e-06 Score=74.82 Aligned_cols=151 Identities=15% Similarity=0.134 Sum_probs=85.2
Q ss_pred ceEEEcCCCCeEEEEEEeC-CCCCeEEEeecCCCCCCCCCcccccCCCCCCCCCeEEEEEEECCCCceEEEEcccCCCCC
Q 008873 5 TGYWWSLDSKFIAFTQVDS-SEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQ 83 (550)
Q Consensus 5 ~~~~wSPdg~~lay~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~ 83 (550)
-.+-|+|+|++|+.....+ .+... .. | ....|+.++..+.....+.+.
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~k---s~------~----------------~~~~l~~~~~~~~~~~~i~l~------ 57 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGK---SY------Y----------------GEFELFYLNEKNIPVESIELK------ 57 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcc---eE------E----------------eeEEEEEEecCCCccceeecc------
Confidence 4577999999999977522 11100 00 0 236788888888777766552
Q ss_pred CCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCceeeccCccccCCCCCccCCCc-EEEEEc
Q 008873 84 NYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYSGG-FIWASE 162 (550)
Q Consensus 84 ~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~ 162 (550)
....+..++|||+|+.++.+...... .+-+.++++ +.+....... .+. ..|+|++ ++.+..
T Consensus 58 --~~~~I~~~~WsP~g~~favi~g~~~~--~v~lyd~~~---~~i~~~~~~~-~n~----------i~wsP~G~~l~~~g 119 (194)
T PF08662_consen 58 --KEGPIHDVAWSPNGNEFAVIYGSMPA--KVTLYDVKG---KKIFSFGTQP-RNT----------ISWSPDGRFLVLAG 119 (194)
T ss_pred --CCCceEEEEECcCCCEEEEEEccCCc--ccEEEcCcc---cEeEeecCCC-ceE----------EEECCCCCEEEEEE
Confidence 23358899999999977666443222 344555542 2222221111 010 1356666 555543
Q ss_pred cCC-ccEEEEEeCCCceeecccccC-eEEEEEEeEeecCCEEEEEEc
Q 008873 163 KTG-FRHLYLHDINGTCLGPITEGD-WMVEQIVGVNEASGQVYFTGT 207 (550)
Q Consensus 163 ~~g-~~~l~~~~~~~~~~~~lT~~~-~~~~~~~~~s~dg~~l~f~~~ 207 (550)
.++ ...|.++|.+..+. +.... ..+... .|||||++|+....
T Consensus 120 ~~n~~G~l~~wd~~~~~~--i~~~~~~~~t~~-~WsPdGr~~~ta~t 163 (194)
T PF08662_consen 120 FGNLNGDLEFWDVRKKKK--ISTFEHSDATDV-EWSPDGRYLATATT 163 (194)
T ss_pred ccCCCcEEEEEECCCCEE--eeccccCcEEEE-EEcCCCCEEEEEEe
Confidence 322 35677888764432 32221 123333 59999999887665
No 170
>PF06057 VirJ: Bacterial virulence protein (VirJ); InterPro: IPR010333 This entry contains several bacterial VirJ virulence proteins. VirJ is thought to be involved in the type IV secretion system. It is thought that the substrate proteins localised to the periplasm may associate with the pilus in a manner that is mediated by VirJ, and suggest a two-step process for type IV secretion in Agrobacterium [].
Probab=98.63 E-value=1.6e-06 Score=73.98 Aligned_cols=183 Identities=16% Similarity=0.183 Sum_probs=112.3
Q ss_pred EEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCchhhHHHHhhccCCCchHHHHHHHHHHHHcCCC
Q 008873 330 TLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLA 409 (550)
Q Consensus 330 ~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~ 409 (550)
++|++-|-++-.. -....++.|+++|+.|+.+|-+-.=.+ ..-......|+.+++++..++.
T Consensus 4 ~~v~~SGDgGw~~-------~d~~~a~~l~~~G~~VvGvdsl~Yfw~---------~rtP~~~a~Dl~~~i~~y~~~w-- 65 (192)
T PF06057_consen 4 LAVFFSGDGGWRD-------LDKQIAEALAKQGVPVVGVDSLRYFWS---------ERTPEQTAADLARIIRHYRARW-- 65 (192)
T ss_pred EEEEEeCCCCchh-------hhHHHHHHHHHCCCeEEEechHHHHhh---------hCCHHHHHHHHHHHHHHHHHHh--
Confidence 5666666333222 223358899999999999996522111 1112223678889999888875
Q ss_pred CCCceEEEEechhHHHHHHHHhhCCC----eeEEEEEcCCcCCcccccchhhhhccCCCCCCccccccCChhhhhhcCC-
Q 008873 410 KVGHIGLYGWSYGGYLSAITLARFPD----VFQCAVSGAPVTSWDGYDTFYTEKYMGLPSEDPVGYEYSSVMHHVHKMK- 484 (550)
Q Consensus 410 d~~~i~i~G~S~GG~~a~~~~~~~~~----~~~~~v~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~- 484 (550)
...++.|+|+|+|+-+.-.+..+-|. +++.+++.+|-... .|... ...+++...... ...+...+.++.
T Consensus 66 ~~~~vvLiGYSFGADvlP~~~nrLp~~~r~~v~~v~Ll~p~~~~-dFeih-v~~wlg~~~~~~----~~~~~pei~~l~~ 139 (192)
T PF06057_consen 66 GRKRVVLIGYSFGADVLPFIYNRLPAALRARVAQVVLLSPSTTA-DFEIH-VSGWLGMGGDDA----AYPVIPEIAKLPP 139 (192)
T ss_pred CCceEEEEeecCCchhHHHHHhhCCHHHHhheeEEEEeccCCcc-eEEEE-hhhhcCCCCCcc----cCCchHHHHhCCC
Confidence 35799999999999888888776663 57777777664321 11111 112233322211 124566777787
Q ss_pred CcEEEEecCCCCCCChHHHHHHHHHHHHcCCCeEEEEcCCCCCcCCCCCcHHHHHHHHHHHHHH
Q 008873 485 GKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIER 548 (550)
Q Consensus 485 ~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p~~~H~~~~~~~~~~~~~~~~~fl~~ 548 (550)
.|+++|+|+.+.... ...+ ....++.+..|| ||.|. .+...+.+.|++-+++
T Consensus 140 ~~v~CiyG~~E~d~~-------cp~l--~~~~~~~i~lpG-gHHfd--~dy~~La~~Il~~l~~ 191 (192)
T PF06057_consen 140 APVQCIYGEDEDDSL-------CPSL--RQPGVEVIALPG-GHHFD--GDYDALAKRILDALKA 191 (192)
T ss_pred CeEEEEEcCCCCCCc-------Cccc--cCCCcEEEEcCC-CcCCC--CCHHHHHHHHHHHHhc
Confidence 499999998775421 1112 235678899998 55552 3466677777776653
No 171
>PF10340 DUF2424: Protein of unknown function (DUF2424); InterPro: IPR019436 Sterol homeostasis in eukaryotic cells relies on the reciprocal interconversion of free sterols and steryl esters. In Saccharomyces cerevisiae (Baker's yeast) sterol acetylation requires the acetyltransferase Atf2, whereas deacetylation requires Say1, a membrane-anchored deacetylase with a putative active site in the ER lumen. Lack of Say1 results in the secretion of acetylated sterols into the culture medium, indicating that the substrate specificity of Say1 determines whether acetylated sterols are secreted from the cells or whether they are deacetylated and retained. In S. cerevisiae cells lacking Say1 or Atf2 are sensitive against the plant-derived allylbenzene eugenol and both Say1 and Atf2 affect pregnenolone toxicity, indicating that lipid acetylation acts as a detoxification pathway []. Homologues of Say1 are present in the mammalian genome and can functionally substitute for Say1 in yeast demonstrating that part of this pathway has been evolutionarily conserved [].
Probab=98.60 E-value=1.8e-06 Score=82.31 Aligned_cols=200 Identities=19% Similarity=0.190 Sum_probs=114.1
Q ss_pred EEEEEc-CCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCC--CCchhhHHHHhhcc
Q 008873 312 YGALYK-PDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTA--RRGLKFEASIKHNC 388 (550)
Q Consensus 312 ~~~~~~-P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g--~~~~~~~~~~~~~~ 388 (550)
..|+.. |.... ++.-|+|||+|||+.........-.....+...| . ...++++||.-.. ..+..+.
T Consensus 107 s~Wlvk~P~~~~--pk~DpVlIYlHGGGY~l~~~p~qi~~L~~i~~~l-~-~~SILvLDYsLt~~~~~~~~yP------- 175 (374)
T PF10340_consen 107 SYWLVKAPNRFK--PKSDPVLIYLHGGGYFLGTTPSQIEFLLNIYKLL-P-EVSILVLDYSLTSSDEHGHKYP------- 175 (374)
T ss_pred eEEEEeCCcccC--CCCCcEEEEEcCCeeEecCCHHHHHHHHHHHHHc-C-CCeEEEEeccccccccCCCcCc-------
Confidence 357777 66532 2345999999999765432211000001111222 2 5699999998654 1221111
Q ss_pred CCCchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhh--C---CCeeEEEEEcCCcCCccccc----------
Q 008873 389 GRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLAR--F---PDVFQCAVSGAPVTSWDGYD---------- 453 (550)
Q Consensus 389 ~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~--~---~~~~~~~v~~~~~~~~~~~~---------- 453 (550)
..+.++++..++|.+.. ..++|.++|-|+||.+++.++.. . ...-+.+|+++|.+......
T Consensus 176 --tQL~qlv~~Y~~Lv~~~--G~~nI~LmGDSAGGnL~Ls~LqyL~~~~~~~~Pk~~iLISPWv~l~~~~~~~~~~~~~n 251 (374)
T PF10340_consen 176 --TQLRQLVATYDYLVESE--GNKNIILMGDSAGGNLALSFLQYLKKPNKLPYPKSAILISPWVNLVPQDSQEGSSYHDN 251 (374)
T ss_pred --hHHHHHHHHHHHHHhcc--CCCeEEEEecCccHHHHHHHHHHHhhcCCCCCCceeEEECCCcCCcCCCCCCCcccccc
Confidence 23678899999999442 24789999999999999887653 1 12347899999976554110
Q ss_pred -----------chhhhhccCC--CCCCccccccCCh-----hhhhhcC--CCcEEEEecCCCCCCChHHHHHHHHHHHHc
Q 008873 454 -----------TFYTEKYMGL--PSEDPVGYEYSSV-----MHHVHKM--KGKLLLVHGMIDENVHFRHTARLINALVAA 513 (550)
Q Consensus 454 -----------~~~~~~~~g~--~~~~~~~~~~~~~-----~~~~~~i--~~P~lii~G~~D~~v~~~~~~~~~~~l~~~ 513 (550)
..+.+.|.+. +......-.-.++ ...-++| ++-++++.|+.+-. -.+.+++.+.+...
T Consensus 252 ~~~D~l~~~~~~~~~~~y~~~~~~~~~~~~~~~~n~~~n~d~~~W~~I~~~~~vfVi~Ge~Evf--rddI~~~~~~~~~~ 329 (374)
T PF10340_consen 252 EKRDMLSYKGLSMFGDAYIGNNDPENDLNSLPFVNIEYNFDAEDWKDILKKYSVFVIYGEDEVF--RDDILEWAKKLNDV 329 (374)
T ss_pred ccccccchhhHHHHHHhhccccccccccccCCccCcccCCChhHHHHhccCCcEEEEECCcccc--HHHHHHHHHHHhhc
Confidence 0122233332 1110000000000 0111222 25799999998754 35778888888755
Q ss_pred CC-----CeEEEEcCCCCCc
Q 008873 514 RK-----PYEILIFPDERHM 528 (550)
Q Consensus 514 ~~-----~~~~~~~p~~~H~ 528 (550)
+. ..++.+-+++.|.
T Consensus 330 ~~~~~~~~~nv~~~~~G~Hi 349 (374)
T PF10340_consen 330 KPNKFSNSNNVYIDEGGIHI 349 (374)
T ss_pred CccccCCcceEEEecCCccc
Confidence 43 3677788888886
No 172
>KOG2551 consensus Phospholipase/carboxyhydrolase [Amino acid transport and metabolism]
Probab=98.58 E-value=1.1e-06 Score=75.99 Aligned_cols=186 Identities=16% Similarity=0.097 Sum_probs=110.1
Q ss_pred CceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCC------CCCch------hh------HHHHhhcc
Q 008873 327 PYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGT------ARRGL------KF------EASIKHNC 388 (550)
Q Consensus 327 ~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~------g~~~~------~~------~~~~~~~~ 388 (550)
+.|-|+++||--.+. +.|+.....+.+.|.+. +-.+.+|-+-. ....+ .. ......+-
T Consensus 4 ~k~rvLcLHGfrQsg---~~F~~Ktg~~rK~l~k~-~el~f~~aPh~~~~~~~~~~~~~~~~~a~~~~~~~~~~Wf~~n~ 79 (230)
T KOG2551|consen 4 KKLRVLCLHGFRQSG---KVFSEKTGSLRKLLKKL-AELVFPDAPHELPKADLPDSEREKKFDAPPDVEQNRYGWFSNNE 79 (230)
T ss_pred CCceEEEecchhhcc---HHHHHHhhhHHHHHHhh-heEEecCCCccCCcccCCcccccccccCCcccccchhhhhcccc
Confidence 347789999943332 23333334456666666 77777776520 00000 00 00001110
Q ss_pred -CC---CchHH-HHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhC--C------CeeEEEEEcCCcCCcccccch
Q 008873 389 -GR---IDAED-QLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARF--P------DVFQCAVSGAPVTSWDGYDTF 455 (550)
Q Consensus 389 -~~---~~~~D-~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~--~------~~~~~~v~~~~~~~~~~~~~~ 455 (550)
.. ...+. +....+|+.+++..| ||+|+|.|+.++.++++.. . ..|+-+|.++|+..+..
T Consensus 80 ~~~~~~~~~eesl~yl~~~i~enGPFD----GllGFSQGA~laa~l~~~~~~~~~~~~~P~~kF~v~~SGf~~~~~---- 151 (230)
T KOG2551|consen 80 ASFTEYFGFEESLEYLEDYIKENGPFD----GLLGFSQGAALAALLAGLGQKGLPYVKQPPFKFAVFISGFKFPSK---- 151 (230)
T ss_pred cccccccChHHHHHHHHHHHHHhCCCc----cccccchhHHHHHHhhcccccCCcccCCCCeEEEEEEecCCCCcc----
Confidence 11 11222 444455666676556 7999999999999988721 1 13677777777643210
Q ss_pred hhhhccCCCCCCccccccCChhhhhhcCCCcEEEEecCCCCCCChHHHHHHHHHHHHcCCCeEEEEcCCCCCcCCCCCcH
Q 008873 456 YTEKYMGLPSEDPVGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDR 535 (550)
Q Consensus 456 ~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p~~~H~~~~~~~~ 535 (550)
...-..+...+++|.|-|.|+.|.++|.+.+..+++.+... .++.-|+ ||.+.. .
T Consensus 152 -----------------~~~~~~~~~~i~~PSLHi~G~~D~iv~~~~s~~L~~~~~~a----~vl~Hpg-gH~VP~---~ 206 (230)
T KOG2551|consen 152 -----------------KLDESAYKRPLSTPSLHIFGETDTIVPSERSEQLAESFKDA----TVLEHPG-GHIVPN---K 206 (230)
T ss_pred -----------------hhhhhhhccCCCCCeeEEecccceeecchHHHHHHHhcCCC----eEEecCC-CccCCC---c
Confidence 00112345678899999999999999999999999987433 4444454 898733 2
Q ss_pred HHHHHHHHHHHHHh
Q 008873 536 IYMEERIWEFIERT 549 (550)
Q Consensus 536 ~~~~~~~~~fl~~~ 549 (550)
....+.+.+||...
T Consensus 207 ~~~~~~i~~fi~~~ 220 (230)
T KOG2551|consen 207 AKYKEKIADFIQSF 220 (230)
T ss_pred hHHHHHHHHHHHHH
Confidence 25567788887653
No 173
>PRK13616 lipoprotein LpqB; Provisional
Probab=98.56 E-value=3.8e-06 Score=86.90 Aligned_cols=157 Identities=11% Similarity=0.026 Sum_probs=94.4
Q ss_pred ceEEEcCCCCeEEEEEEeCCCCCeEEEeecCCCCCCCCCcccccCCCCCCCCCeEEEEEEECCCCceEEEEcccCCCCCC
Q 008873 5 TGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQN 84 (550)
Q Consensus 5 ~~~~wSPdg~~lay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~ 84 (550)
++...||||+++||++....+. ...+.+||+.+.. +..++++.+
T Consensus 353 sspaiSpdG~~vA~v~~~~~~~----------------------------~d~~s~Lwv~~~g-g~~~~lt~g------- 396 (591)
T PRK13616 353 TSAALSRSGRQVAAVVTLGRGA----------------------------PDPASSLWVGPLG-GVAVQVLEG------- 396 (591)
T ss_pred ccceECCCCCEEEEEEeecCCC----------------------------CCcceEEEEEeCC-CcceeeecC-------
Confidence 5677999999999998532110 1124689999974 444666432
Q ss_pred CCCceeEEEEECCCCeEEEEEEec--------CCCceEEEEEECCCCceEEEEEeecCceeeccCccccCCCCCccCCCc
Q 008873 85 YDEEYLARVNWMHGNILTAQVLNR--------SQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYSGG 156 (550)
Q Consensus 85 ~~~~~~~~~~wspDg~~i~~~~~r--------~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (550)
. .+..|+|||||+.|+|+.++ .....+||.+++++|+.++ ..... +.- ..|++|+
T Consensus 397 --~-~~t~PsWspDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~--~~~g~--------Iss----l~wSpDG 459 (591)
T PRK13616 397 --H-SLTRPSWSLDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVAS--RVPGP--------ISE----LQLSRDG 459 (591)
T ss_pred --C-CCCCceECCCCCceEEEecCcceEEEeccCCCceEEEEeccCchhhh--ccCCC--------cCe----EEECCCC
Confidence 2 36789999999988877544 1134578888888887654 11111 000 1345555
Q ss_pred --EEEEEccCCccEEEE---EeCCCceeec------ccccCeE-EEEEEeEeecCCEEEEEEcCCCCceeEEEEEEeCCC
Q 008873 157 --FIWASEKTGFRHLYL---HDINGTCLGP------ITEGDWM-VEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPD 224 (550)
Q Consensus 157 --~~~~s~~~g~~~l~~---~~~~~~~~~~------lT~~~~~-~~~~~~~s~dg~~l~f~~~~~~~~~~~l~~v~~~~~ 224 (550)
++|+++ | +||+ ...++|+ +. |+.+--. +... .|..++. |+..... ....+|.+++ +
T Consensus 460 ~RiA~i~~--g--~v~Va~Vvr~~~G~-~~l~~~~~l~~~l~~~~~~l-~W~~~~~-L~V~~~~---~~~~v~~v~v--D 527 (591)
T PRK13616 460 VRAAMIIG--G--KVYLAVVEQTEDGQ-YALTNPREVGPGLGDTAVSL-DWRTGDS-LVVGRSD---PEHPVWYVNL--D 527 (591)
T ss_pred CEEEEEEC--C--EEEEEEEEeCCCCc-eeecccEEeecccCCccccc-eEecCCE-EEEEecC---CCCceEEEec--C
Confidence 777763 3 6777 4444554 33 3333222 2333 4888876 5544332 2367999999 6
Q ss_pred CC
Q 008873 225 WN 226 (550)
Q Consensus 225 g~ 226 (550)
|.
T Consensus 528 G~ 529 (591)
T PRK13616 528 GS 529 (591)
T ss_pred Cc
Confidence 75
No 174
>PRK04940 hypothetical protein; Provisional
Probab=98.54 E-value=2.6e-06 Score=72.62 Aligned_cols=116 Identities=20% Similarity=0.165 Sum_probs=76.8
Q ss_pred CceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCcccccchhhhhccCCCCCCccccccCChhhhhhcCC----CcE
Q 008873 412 GHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTFYTEKYMGLPSEDPVGYEYSSVMHHVHKMK----GKL 487 (550)
Q Consensus 412 ~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~----~P~ 487 (550)
++++|+|.|+|||.|.+++.++. + .+|+++|...... ....++|.+.+ |....+ .+++.++ ...
T Consensus 60 ~~~~liGSSLGGyyA~~La~~~g--~-~aVLiNPAv~P~~----~L~~~ig~~~~----y~~~~~-~h~~eL~~~~p~r~ 127 (180)
T PRK04940 60 ERPLICGVGLGGYWAERIGFLCG--I-RQVIFNPNLFPEE----NMEGKIDRPEE----YADIAT-KCVTNFREKNRDRC 127 (180)
T ss_pred CCcEEEEeChHHHHHHHHHHHHC--C-CEEEECCCCChHH----HHHHHhCCCcc----hhhhhH-HHHHHhhhcCcccE
Confidence 46999999999999999999864 2 3455666654311 11223333221 222221 2233332 246
Q ss_pred EEEecCCCCCCChHHHHHHHHHHHHcCCCeEEEEcCCCCCcCCCCCcHHHHHHHHHHHHHH
Q 008873 488 LLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIER 548 (550)
Q Consensus 488 lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p~~~H~~~~~~~~~~~~~~~~~fl~~ 548 (550)
+++..+.|++..+.++.+.+... ....+.+|++|.|.+ .......|++|+..
T Consensus 128 ~vllq~gDEvLDyr~a~~~y~~~------y~~~v~~GGdH~f~~---fe~~l~~I~~F~~~ 179 (180)
T PRK04940 128 LVILSRNDEVLDSQRTAEELHPY------YEIVWDEEQTHKFKN---ISPHLQRIKAFKTL 179 (180)
T ss_pred EEEEeCCCcccCHHHHHHHhccC------ceEEEECCCCCCCCC---HHHHHHHHHHHHhc
Confidence 99999999999998887777432 257889999999854 66678899999853
No 175
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=98.53 E-value=5.7e-05 Score=72.52 Aligned_cols=182 Identities=10% Similarity=0.011 Sum_probs=93.5
Q ss_pred EEEEEECCCCceEEEEcccCCCCCCCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCceeec
Q 008873 60 RLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNL 139 (550)
Q Consensus 60 ~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~ 139 (550)
.|+++|+++++.... +. . ......+.|+|||+.++...... ..|+++|+.+++............
T Consensus 54 ~v~~~d~~~~~~~~~-~~-------~-~~~~~~~~~~~~g~~l~~~~~~~---~~l~~~d~~~~~~~~~~~~~~~~~--- 118 (300)
T TIGR03866 54 TIQVIDLATGEVIGT-LP-------S-GPDPELFALHPNGKILYIANEDD---NLVTVIDIETRKVLAEIPVGVEPE--- 118 (300)
T ss_pred eEEEEECCCCcEEEe-cc-------C-CCCccEEEECCCCCEEEEEcCCC---CeEEEEECCCCeEEeEeeCCCCcc---
Confidence 477889988866432 11 0 11234578999999765553222 258888988765432221110000
Q ss_pred cCccccCCCCCccCCCc-EEEEEccCCccEEEEEeCCCceeec-ccccCeEEEEEEeEeecCCEEEEEEcCCCCceeEEE
Q 008873 140 HDCFTPLDKGVTKYSGG-FIWASEKTGFRHLYLHDINGTCLGP-ITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLY 217 (550)
Q Consensus 140 ~~~~~~~~~~~~~~~~~-~~~~s~~~g~~~l~~~~~~~~~~~~-lT~~~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~ 217 (550)
.+ .+++++ +++.+..++ ..++.++.++++... +..+. .... ..|+++|+.|++.+..++ .++
T Consensus 119 --~~-------~~~~dg~~l~~~~~~~-~~~~~~d~~~~~~~~~~~~~~-~~~~-~~~s~dg~~l~~~~~~~~----~v~ 182 (300)
T TIGR03866 119 --GM-------AVSPDGKIVVNTSETT-NMAHFIDTKTYEIVDNVLVDQ-RPRF-AEFTADGKELWVSSEIGG----TVS 182 (300)
T ss_pred --eE-------EECCCCCEEEEEecCC-CeEEEEeCCCCeEEEEEEcCC-CccE-EEECCCCCEEEEEcCCCC----EEE
Confidence 01 234544 444443322 235556766554322 21111 1122 358999998887755443 355
Q ss_pred EEEeCCCCCCCCCCCeeeCCC-C-----c--eEEEEECCCCCEEEEeecCCCCCCEEEEEEcCCCceeEec
Q 008873 218 CAKLYPDWNHTLEAPVKLTNG-K-----G--KHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPL 280 (550)
Q Consensus 218 ~v~~~~~g~~~~~~~~~lt~~-~-----~--~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~~~~~l 280 (550)
.+++. .+. ....++.. . . ...+.++||++.++...... ..+.++|..+++..+.+
T Consensus 183 i~d~~-~~~----~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~---~~i~v~d~~~~~~~~~~ 245 (300)
T TIGR03866 183 VIDVA-TRK----VIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPA---NRVAVVDAKTYEVLDYL 245 (300)
T ss_pred EEEcC-cce----eeeeeeecccccccccCCccceEECCCCCEEEEEcCCC---CeEEEEECCCCcEEEEE
Confidence 55662 221 12222211 0 1 23457899999865544332 36888898777654433
No 176
>PF10230 DUF2305: Uncharacterised conserved protein (DUF2305); InterPro: IPR019363 This entry contains proteins that have no known function.
Probab=98.51 E-value=2.6e-06 Score=79.64 Aligned_cols=192 Identities=16% Similarity=0.118 Sum_probs=113.0
Q ss_pred ceEEEEEcCCCCceeecccccccchhHhHHHH---hCCcEEEEECCCCCCCCchhhHHHHhhccCCCchHHHHHHHHHHH
Q 008873 328 YKTLISVYGGPCVQLVCDSWINTVDMRAQYLR---SKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLI 404 (550)
Q Consensus 328 ~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~---~~G~~vv~~d~rG~g~~~~~~~~~~~~~~~~~~~~D~~~~~~~l~ 404 (550)
.++++++.|.|+-..+. ..+.+.|. ...+.|+++.+.|+......-. ...+.....++|+++-.-.+.
T Consensus 2 ~~li~~IPGNPGlv~fY-------~~Fl~~L~~~l~~~~~i~~ish~Gh~~~~~~~~--~~~~~~~~sL~~QI~hk~~~i 72 (266)
T PF10230_consen 2 RPLIVFIPGNPGLVEFY-------EEFLSALYEKLNPQFEILGISHAGHSTSPSNSK--FSPNGRLFSLQDQIEHKIDFI 72 (266)
T ss_pred cEEEEEECCCCChHHHH-------HHHHHHHHHhCCCCCeeEEecCCCCcCCccccc--ccCCCCccCHHHHHHHHHHHH
Confidence 37899999999975432 22244444 3589999999999865443200 001223345677665533332
Q ss_pred Hc----CCCCCCceEEEEechhHHHHHHHHhhCC---CeeEEEEEcCCcCC-cccc------------------------
Q 008873 405 KQ----GLAKVGHIGLYGWSYGGYLSAITLARFP---DVFQCAVSGAPVTS-WDGY------------------------ 452 (550)
Q Consensus 405 ~~----~~~d~~~i~i~G~S~GG~~a~~~~~~~~---~~~~~~v~~~~~~~-~~~~------------------------ 452 (550)
++ ......++.++|||.|+|+++.++-+.+ ..++.++..-|... +...
T Consensus 73 ~~~~~~~~~~~~~liLiGHSIGayi~levl~r~~~~~~~V~~~~lLfPTi~~ia~Sp~G~~l~~~~~~~~~~~~~~~~~~ 152 (266)
T PF10230_consen 73 KELIPQKNKPNVKLILIGHSIGAYIALEVLKRLPDLKFRVKKVILLFPTIEDIAKSPNGRRLTPLLFSPPPLVWLASFLS 152 (266)
T ss_pred HHHhhhhcCCCCcEEEEeCcHHHHHHHHHHHhccccCCceeEEEEeCCccccccCCchhHHHHHHHhhccHHHHHHHHHH
Confidence 22 1114578999999999999999999988 56777777777532 1100
Q ss_pred ------cc----hhhhhccCCCCCC----------c-----------ccc---ccCChhhhhhcC---CCcEEEEecCCC
Q 008873 453 ------DT----FYTEKYMGLPSED----------P-----------VGY---EYSSVMHHVHKM---KGKLLLVHGMID 495 (550)
Q Consensus 453 ------~~----~~~~~~~g~~~~~----------~-----------~~~---~~~~~~~~~~~i---~~P~lii~G~~D 495 (550)
.. +.....++.+... + +++ .+.+.....+.. ..++.+..|.+|
T Consensus 153 ~l~~~lP~~~~~~lv~~~~~~~~~~~~~t~~~l~~~~~v~qaL~Ma~~Em~~I~~~d~~~~~~~~~~~~~kl~f~fg~~D 232 (266)
T PF10230_consen 153 FLLSLLPESVLRWLVRWVMGFPPPAVEATTKFLLSPRVVRQALYMARDEMREIREDDNDELIKHHNENGDKLWFYFGQND 232 (266)
T ss_pred HHHHHCCHHHHHHHHHHHcCCChHHHHHHHHHhcCHHHHHHHHHHHHHHHHHccCcchHHHHHHhccCCCEEEEEEeCCC
Confidence 00 0011122333110 0 000 011101112222 568999999999
Q ss_pred CCCChHHHHHHHHHHHHcCCCeEEEEcCCCCCcC
Q 008873 496 ENVHFRHTARLINALVAARKPYEILIFPDERHMP 529 (550)
Q Consensus 496 ~~v~~~~~~~~~~~l~~~~~~~~~~~~p~~~H~~ 529 (550)
..||.+...++.+++......+.+.. ++-.|+|
T Consensus 233 ~Wvp~~~~~~l~~~~~~~~~~~~v~~-~~i~HaF 265 (266)
T PF10230_consen 233 HWVPNETRDELIERYPGHEPDVVVDE-EGIPHAF 265 (266)
T ss_pred CCCCHHHHHHHHHHcCCCCCeEEEec-CCCCCCC
Confidence 99999989999888754444555544 7777876
No 177
>PF12146 Hydrolase_4: Putative lysophospholipase; InterPro: IPR022742 This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins.
Probab=98.50 E-value=6.5e-07 Score=65.99 Aligned_cols=59 Identities=27% Similarity=0.373 Sum_probs=48.1
Q ss_pred CcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCch
Q 008873 308 GTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGL 378 (550)
Q Consensus 308 g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~ 378 (550)
|.+|.+..|.|+.. ++.+|+++||...... .+..+++.|+++||.|+++|+||+|.|..
T Consensus 1 G~~L~~~~w~p~~~-----~k~~v~i~HG~~eh~~-------ry~~~a~~L~~~G~~V~~~D~rGhG~S~g 59 (79)
T PF12146_consen 1 GTKLFYRRWKPENP-----PKAVVVIVHGFGEHSG-------RYAHLAEFLAEQGYAVFAYDHRGHGRSEG 59 (79)
T ss_pred CcEEEEEEecCCCC-----CCEEEEEeCCcHHHHH-------HHHHHHHHHHhCCCEEEEECCCcCCCCCC
Confidence 56789999999762 4589999999655432 45667999999999999999999998863
No 178
>TIGR03502 lipase_Pla1_cef extracellular lipase, Pla-1/cef family. Members of this protein family are bacterial lipoproteins largely from the Gammaproteobacteria. Characterized members are expressed in extracellularly and have esterase activity. Members include the lipase Pla-1 from Aeromonas hydrophila (AF092033) and CHO cell elongation factor (cef) from Vibrio hollisae
Probab=98.49 E-value=5.9e-07 Score=94.15 Aligned_cols=99 Identities=16% Similarity=0.110 Sum_probs=66.5
Q ss_pred CceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCchhhH---------HHH-h---------hc
Q 008873 327 PYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFE---------ASI-K---------HN 387 (550)
Q Consensus 327 ~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~~~~---------~~~-~---------~~ 387 (550)
..|+||++||-.+... .|..+++.|+++||.|+++|+||+|.+..... ... + ++
T Consensus 448 g~P~VVllHG~~g~~~-------~~~~lA~~La~~Gy~VIaiDlpGHG~S~~~~~~~~~~a~~~~~~~y~Nl~~l~~aRD 520 (792)
T TIGR03502 448 GWPVVIYQHGITGAKE-------NALAFAGTLAAAGVATIAIDHPLHGARSFDANASGVNATNANVLAYMNLASLLVARD 520 (792)
T ss_pred CCcEEEEeCCCCCCHH-------HHHHHHHHHHhCCcEEEEeCCCCCCccccccccccccccccCccceecccccccccc
Confidence 4689999999655432 34556788999999999999999997733200 000 0 00
Q ss_pred cCCCchHHHHHHHHHHH------Hc----CCCCCCceEEEEechhHHHHHHHHhh
Q 008873 388 CGRIDAEDQLTGAEWLI------KQ----GLAKVGHIGLYGWSYGGYLSAITLAR 432 (550)
Q Consensus 388 ~~~~~~~D~~~~~~~l~------~~----~~~d~~~i~i~G~S~GG~~a~~~~~~ 432 (550)
.-...+.|+......+. ++ ...+..++.++||||||.++..++..
T Consensus 521 n~rQ~v~Dll~L~~~l~~~~~~~~~~~~~~~~~~~~V~~lGHSLGgiig~~~~~~ 575 (792)
T TIGR03502 521 NLRQSILDLLGLRLSLNGSALAGAPLSGINVIDGSKVSFLGHSLGGIVGTSFIAY 575 (792)
T ss_pred CHHHHHHHHHHHHHHHhcccccccccccccCCCCCcEEEEecCHHHHHHHHHHHh
Confidence 00123567766666665 11 12467799999999999999988875
No 179
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=98.49 E-value=2.9e-06 Score=80.75 Aligned_cols=159 Identities=16% Similarity=0.287 Sum_probs=86.2
Q ss_pred CCCcccccCCCCCCCC-CeEEEEEEECCCCceEEEEcccCCCCCCCCCceeEEEEECCCCeEEEEEEe-cCCCceEEEEE
Q 008873 41 SEAQEDHAYPFAGASN-VKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLN-RSQTKLKVLKF 118 (550)
Q Consensus 41 ~~~~~~~~y~~~g~~~-~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~wspDg~~i~~~~~-r~~~~~~l~~~ 118 (550)
|.++..+.|.--|.-. -..+||+++.+++..+++.- ......+..-.|+|||+.|.+.+. +.+....|+.+
T Consensus 197 P~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~-------~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~ 269 (386)
T PF14583_consen 197 PTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHR-------RMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGY 269 (386)
T ss_dssp TTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS----------TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE
T ss_pred CCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeec-------CCCCcccccccccCCCCEEEEEeecCCCCceEEEee
Confidence 4556667776666544 34689999999988887733 122456778899999998887654 44446679999
Q ss_pred ECCCCceEEEEEeecCceeeccCccccCCCCCccCCCcEEEEEcc----------CC-----ccEEEEEeCCCceeeccc
Q 008873 119 DIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYSGGFIWASEK----------TG-----FRHLYLHDINGTCLGPIT 183 (550)
Q Consensus 119 ~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~----------~g-----~~~l~~~~~~~~~~~~lT 183 (550)
++++++.+.+...+. .+. |.. ++|+=+++.|. +| ..-||+++...+..+.|.
T Consensus 270 d~~t~~~~~~~~~p~--~~H----~~s-------s~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~l~ 336 (386)
T PF14583_consen 270 DPDTGERRRLMEMPW--CSH----FMS-------SPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFRKLA 336 (386)
T ss_dssp -TTT--EEEEEEE-S--EEE----EEE--------TTSSEEEEEE-------------------EEEEEETTTTEEEEEE
T ss_pred CCCCCCceEEEeCCc--eee----eEE-------cCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCceeeee
Confidence 999998877655431 111 111 22332222221 11 246788888777666665
Q ss_pred ccC--eEE--------EEEEeEeecCCEEEEEEcCCCCceeEEEEEEe
Q 008873 184 EGD--WMV--------EQIVGVNEASGQVYFTGTLDGPLESHLYCAKL 221 (550)
Q Consensus 184 ~~~--~~~--------~~~~~~s~dg~~l~f~~~~~~~~~~~l~~v~~ 221 (550)
..+ |.+ ..-+.+||||++|+|+++..+. .+||.|.+
T Consensus 337 ~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~--~~vY~v~i 382 (386)
T PF14583_consen 337 RHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDMEGP--PAVYLVEI 382 (386)
T ss_dssp E-------BTTBSSTT----EE-TTSSEEEEEE-TTSS---EEEEEE-
T ss_pred eccCcceeecCCCccCCCCCccCCCCCEEEEECCCCCC--ccEEEEeC
Confidence 532 221 1224699999999999999876 79999987
No 180
>PF11339 DUF3141: Protein of unknown function (DUF3141); InterPro: IPR024501 This family of proteins appears to be predominantly expressed in Proteobacteria. Their function is unknown.
Probab=98.49 E-value=6.7e-06 Score=80.13 Aligned_cols=191 Identities=16% Similarity=0.225 Sum_probs=112.3
Q ss_pred cCCCCCCCCCCceEEEEE----cCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCchhhHHHHhhccCCCc
Q 008873 317 KPDESRYGPPPYKTLISV----YGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRID 392 (550)
Q Consensus 317 ~P~~~~~~~~~~P~vv~~----hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~~~~~~~~~~~~~~~ 392 (550)
.|.+....+.|.|+||.= || |+-. .|.. +...-.....|+.|..+-+.-...-| ..
T Consensus 58 pp~~~~~d~~krP~vViDPRAGHG-pGIG----GFK~--dSevG~AL~~GHPvYFV~F~p~P~pg-------------QT 117 (581)
T PF11339_consen 58 PPEGVPVDPTKRPFVVIDPRAGHG-PGIG----GFKP--DSEVGVALRAGHPVYFVGFFPEPEPG-------------QT 117 (581)
T ss_pred CCCCCCCCCCCCCeEEeCCCCCCC-CCcc----CCCc--ccHHHHHHHcCCCeEEEEecCCCCCC-------------Cc
Confidence 344432233678988863 55 2222 2222 11233334558888777765433222 23
Q ss_pred hHHHHHHHHH----HHHcCCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEE-EcCCcCCcccc-------------c-
Q 008873 393 AEDQLTGAEW----LIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAV-SGAPVTSWDGY-------------D- 453 (550)
Q Consensus 393 ~~D~~~~~~~----l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v-~~~~~~~~~~~-------------~- 453 (550)
+.|+..+... +.+.. -+..+..|+|-|.||.+++++++.+|+++.-+| +++|+.-|... .
T Consensus 118 l~DV~~ae~~Fv~~V~~~h-p~~~kp~liGnCQgGWa~~mlAA~~Pd~~gplvlaGaPlsywaG~~g~nPmRy~ggl~gg 196 (581)
T PF11339_consen 118 LEDVMRAEAAFVEEVAERH-PDAPKPNLIGNCQGGWAAMMLAALRPDLVGPLVLAGAPLSYWAGERGDNPMRYMGGLLGG 196 (581)
T ss_pred HHHHHHHHHHHHHHHHHhC-CCCCCceEEeccHHHHHHHHHHhcCcCccCceeecCCCcccccCCCCCCcHHHhcCCCcc
Confidence 6666665433 33321 144489999999999999999999999886554 46676554310 0
Q ss_pred ch-------------------------------hhh-------------------hccCCCC-CCcccc-----------
Q 008873 454 TF-------------------------------YTE-------------------KYMGLPS-EDPVGY----------- 471 (550)
Q Consensus 454 ~~-------------------------------~~~-------------------~~~g~~~-~~~~~~----------- 471 (550)
++ |.+ ++.+.+. -+.+.+
T Consensus 197 sw~~~l~sDlG~G~fdGa~lv~nFe~lnPa~~~w~K~y~Ly~~iD~e~~Rfl~FErWwgg~~~l~~~ei~~Iv~nLFvgN 276 (581)
T PF11339_consen 197 SWLTALVSDLGNGRFDGAWLVQNFENLNPANTYWSKYYDLYANIDTERERFLEFERWWGGFYDLNGEEILWIVENLFVGN 276 (581)
T ss_pred hHHHHHHHHcCCCccCcHHHHhhhhccChhHHHHHHHHHHHhccCCchhhhhHHHHHhCCccCCCHHHHHHHHHHHhccc
Confidence 00 000 0001000 000000
Q ss_pred --------ccCChhhhhhcCCCcEEEEecCCCCCCChHHHHHHH-------HHHHHcCCCeEEEEcCCCCCc
Q 008873 472 --------EYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLI-------NALVAARKPYEILIFPDERHM 528 (550)
Q Consensus 472 --------~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~-------~~l~~~~~~~~~~~~p~~~H~ 528 (550)
...-...++++|++|+.++.+..|.++|++|+.... +.++.+|..+.+.+-+..||-
T Consensus 277 rL~~g~~~~~~G~~~DLr~Ir~Piivfas~gDnITPP~QaL~WI~dlY~~~~ei~a~gQ~IVY~~h~~vGHL 348 (581)
T PF11339_consen 277 RLAKGEFRVSDGRRVDLRNIRSPIIVFASYGDNITPPQQALNWIPDLYPDTEEIKAAGQTIVYLLHESVGHL 348 (581)
T ss_pred hhccCceeccCCcEeehhhCCCCEEEEeccCCCCCChhHhccchHhhcCCHHHHHhCCCEEEEEecCCCCce
Confidence 000112357889999999999999999999995554 446777888888899999995
No 181
>PF11144 DUF2920: Protein of unknown function (DUF2920); InterPro: IPR022605 This bacterial family of proteins has no known function.
Probab=98.49 E-value=1.3e-05 Score=76.85 Aligned_cols=134 Identities=15% Similarity=0.033 Sum_probs=85.7
Q ss_pred chHHHHHHHHHHHHc-CCC-CCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCc--ccc-c--chhhh------
Q 008873 392 DAEDQLTGAEWLIKQ-GLA-KVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSW--DGY-D--TFYTE------ 458 (550)
Q Consensus 392 ~~~D~~~~~~~l~~~-~~~-d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~--~~~-~--~~~~~------ 458 (550)
...|++.|+.++.++ +.. +.-++.++|+|+|||++..++--.|..|.+++--++..-. +.. . ..|.+
T Consensus 162 qAiD~INAl~~l~k~~~~~~~~lp~I~~G~s~G~yla~l~~k~aP~~~~~~iDns~~~~p~l~~I~Gre~~~~~y~~~~~ 241 (403)
T PF11144_consen 162 QAIDIINALLDLKKIFPKNGGGLPKIYIGSSHGGYLAHLCAKIAPWLFDGVIDNSSYALPPLRYIFGREIDFMKYICSGE 241 (403)
T ss_pred HHHHHHHHHHHHHHhhhcccCCCcEEEEecCcHHHHHHHHHhhCccceeEEEecCccccchhheeeeeecCccccccccc
Confidence 367888888888876 222 2358999999999999999998889999999887664321 110 0 00000
Q ss_pred ----------hccCCCCCCc---------cccccC-----ChhhhhhcC--CCcEEEEecCCCCCCChHHHHHHHHHHHH
Q 008873 459 ----------KYMGLPSEDP---------VGYEYS-----SVMHHVHKM--KGKLLLVHGMIDENVHFRHTARLINALVA 512 (550)
Q Consensus 459 ----------~~~g~~~~~~---------~~~~~~-----~~~~~~~~i--~~P~lii~G~~D~~v~~~~~~~~~~~l~~ 512 (550)
-+..+.|... +.+.-. .-+.-.++. ++-....|+..|+.+|.++-.++++.++.
T Consensus 242 ~~~~~~~~i~~~~Kt~Wt~n~~S~~~Fs~~~~~IR~iLn~~HL~iqs~~n~~~~yvsYHs~~D~~~p~~~K~~l~~~l~~ 321 (403)
T PF11144_consen 242 FFNFKNIRIYCFDKTFWTRNKNSPYYFSKARYIIRSILNPDHLKIQSNYNKKIIYVSYHSIKDDLAPAEDKEELYEILKN 321 (403)
T ss_pred ccccCCEEEEEEeccccccCCCCccccChHHHHHHHhcChHHHHHHHhcccceEEEEEeccCCCCCCHHHHHHHHHHHHH
Confidence 0001222210 011000 001112223 23456689999999999999999999999
Q ss_pred cCCCeEEEEcCCC
Q 008873 513 ARKPYEILIFPDE 525 (550)
Q Consensus 513 ~~~~~~~~~~p~~ 525 (550)
.|-+++++.+.++
T Consensus 322 lgfda~l~lIkde 334 (403)
T PF11144_consen 322 LGFDATLHLIKDE 334 (403)
T ss_pred cCCCeEEEEecCh
Confidence 9999999988443
No 182
>PF06028 DUF915: Alpha/beta hydrolase of unknown function (DUF915); InterPro: IPR010315 This family consists of bacterial proteins of unknown function, which are hydrolase-like.; PDB: 3LP5_A 3FLE_A 3DS8_A.
Probab=98.48 E-value=1.5e-06 Score=79.59 Aligned_cols=206 Identities=17% Similarity=0.101 Sum_probs=111.5
Q ss_pred CceEEEEEcCCCCceeecccccccchhHhHHHH-hCCc----EEEEECCCCCCCCchhh--------HHHHhhccCC---
Q 008873 327 PYKTLISVYGGPCVQLVCDSWINTVDMRAQYLR-SKGI----LVWKLDNRGTARRGLKF--------EASIKHNCGR--- 390 (550)
Q Consensus 327 ~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~-~~G~----~vv~~d~rG~g~~~~~~--------~~~~~~~~~~--- 390 (550)
..|+ ||+||..++.. .++.+.+.+. +.|. .++.++.-|.-.....+ ......+...
T Consensus 11 ~tPT-ifihG~~gt~~-------s~~~mi~~~~~~~~~~~~~l~v~V~~~G~v~~~G~~~~~~~nPiIqV~F~~n~~~~~ 82 (255)
T PF06028_consen 11 TTPT-IFIHGYGGTAN-------SFNHMINRLENKQGVAQKVLTVTVSKNGKVKVSGKLSKNAKNPIIQVNFEDNRNANY 82 (255)
T ss_dssp -EEE-EEE--TTGGCC-------CCHHHHHHHHHCSTS-S-EEEEEEETTSEEEEES---TT-SS-EEEEEESSTT-CHH
T ss_pred CCcE-EEECCCCCChh-------HHHHHHHHHHhhcCCCceEEEEEECCCCeEEEeeecCCCCCCCEEEEEecCCCcCCH
Confidence 3455 66899766643 4455677776 5553 34555544421111000 0000011000
Q ss_pred -CchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhCCC-----eeEEEEEcCCcCCcc-cccchhhh---hc
Q 008873 391 -IDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPD-----VFQCAVSGAPVTSWD-GYDTFYTE---KY 460 (550)
Q Consensus 391 -~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~-----~~~~~v~~~~~~~~~-~~~~~~~~---~~ 460 (550)
....-+..++.+|.++..+ +++-++||||||..++.++..+.. .+...|++++..+-. ........ .-
T Consensus 83 ~~qa~wl~~vl~~L~~~Y~~--~~~N~VGHSmGg~~~~~yl~~~~~~~~~P~l~K~V~Ia~pfng~~~~~~~~~~~~~~~ 160 (255)
T PF06028_consen 83 KKQAKWLKKVLKYLKKKYHF--KKFNLVGHSMGGLSWTYYLENYGNDKNLPKLNKLVTIAGPFNGILGMNDDQNQNDLNK 160 (255)
T ss_dssp HHHHHHHHHHHHHHHHCC----SEEEEEEETHHHHHHHHHHHHCTTGTTS-EEEEEEEES--TTTTTCCSC-TTTT-CST
T ss_pred HHHHHHHHHHHHHHHHhcCC--CEEeEEEECccHHHHHHHHHHhccCCCCcccceEEEeccccCccccccccchhhhhcc
Confidence 1245567788888888654 689999999999999999887421 356666655543322 11110000 00
Q ss_pred cCCCCCCccccccCChhhh-hhcCC--CcEEEEecC------CCCCCChHHHHHHHHHHHHcCCCeEEEEcCC--CCCcC
Q 008873 461 MGLPSEDPVGYEYSSVMHH-VHKMK--GKLLLVHGM------IDENVHFRHTARLINALVAARKPYEILIFPD--ERHMP 529 (550)
Q Consensus 461 ~g~~~~~~~~~~~~~~~~~-~~~i~--~P~lii~G~------~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p~--~~H~~ 529 (550)
.| |......|...- .. -.++. ..+|-|.|. .|..||...+..+..-++.....++-.++.| +.|+-
T Consensus 161 ~g-p~~~~~~y~~l~--~~~~~~~p~~i~VLnI~G~~~~g~~sDG~V~~~Ss~sl~~L~~~~~~~Y~e~~v~G~~a~HS~ 237 (255)
T PF06028_consen 161 NG-PKSMTPMYQDLL--KNRRKNFPKNIQVLNIYGDLEDGSNSDGIVPNASSLSLRYLLKNRAKSYQEKTVTGKDAQHSQ 237 (255)
T ss_dssp T--BSS--HHHHHHH--HTHGGGSTTT-EEEEEEEESBTTCSBTSSSBHHHHCTHHHHCTTTSSEEEEEEEESGGGSCCG
T ss_pred cC-CcccCHHHHHHH--HHHHhhCCCCeEEEEEecccCCCCCCCeEEeHHHHHHHHHHhhcccCceEEEEEECCCCcccc
Confidence 12 322222332211 11 12332 578999998 8999999999888777766666777777765 68986
Q ss_pred CCCCcHHHHHHHHHHHHH
Q 008873 530 RRHRDRIYMEERIWEFIE 547 (550)
Q Consensus 530 ~~~~~~~~~~~~~~~fl~ 547 (550)
.+ ++ ..+.+.|.+||-
T Consensus 238 Lh-eN-~~V~~~I~~FLw 253 (255)
T PF06028_consen 238 LH-EN-PQVDKLIIQFLW 253 (255)
T ss_dssp GG-CC-HHHHHHHHHHHC
T ss_pred CC-CC-HHHHHHHHHHhc
Confidence 55 33 366788888873
No 183
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=98.47 E-value=2.2e-05 Score=73.40 Aligned_cols=153 Identities=12% Similarity=0.165 Sum_probs=92.5
Q ss_pred CceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCceeeccCccccCCCCCccCCCcEEEEEccCCc
Q 008873 87 EEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYSGGFIWASEKTGF 166 (550)
Q Consensus 87 ~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~ 166 (550)
...+.-+.||||.++++.+...+. +.+-|+++|+.+.+.... -+ ++. ....|-||++-++.-. --
T Consensus 269 ~~~V~yi~wSPDdryLlaCg~~e~----~~lwDv~tgd~~~~y~~~-~~-------~S~--~sc~W~pDg~~~V~Gs-~d 333 (519)
T KOG0293|consen 269 SQPVSYIMWSPDDRYLLACGFDEV----LSLWDVDTGDLRHLYPSG-LG-------FSV--SSCAWCPDGFRFVTGS-PD 333 (519)
T ss_pred cCceEEEEECCCCCeEEecCchHh----eeeccCCcchhhhhcccC-cC-------CCc--ceeEEccCCceeEecC-CC
Confidence 345677899999998887744432 777789999988766532 11 111 1124677774443211 12
Q ss_pred cEEEEEeCCCceeecccccCeE------EEEEEeEeecCCEEEEEEcCCCCceeEEEEEEeCCCCCCCCCCCeeeCCCCc
Q 008873 167 RHLYLHDINGTCLGPITEGDWM------VEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTNGKG 240 (550)
Q Consensus 167 ~~l~~~~~~~~~~~~lT~~~~~------~~~~~~~s~dg~~l~f~~~~~~~~~~~l~~v~~~~~g~~~~~~~~~lt~~~~ 240 (550)
.+++..+++|... +.|. +.+. ..++||++++....+. ++...+.. ... ....++...+
T Consensus 334 r~i~~wdlDgn~~-----~~W~gvr~~~v~dl-ait~Dgk~vl~v~~d~-----~i~l~~~e-~~~----dr~lise~~~ 397 (519)
T KOG0293|consen 334 RTIIMWDLDGNIL-----GNWEGVRDPKVHDL-AITYDGKYVLLVTVDK-----KIRLYNRE-ARV----DRGLISEEQP 397 (519)
T ss_pred CcEEEecCCcchh-----hcccccccceeEEE-EEcCCCcEEEEEeccc-----ceeeechh-hhh----hhccccccCc
Confidence 5788899887431 2332 3333 3788999998876432 33333431 110 1224555567
Q ss_pred eEEEEECCCCCEEEEeecCCCCCCEEEEEEcCCC
Q 008873 241 KHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDG 274 (550)
Q Consensus 241 ~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g 274 (550)
.+++.+|.||++++.... +.++.+.|++..
T Consensus 398 its~~iS~d~k~~LvnL~----~qei~LWDl~e~ 427 (519)
T KOG0293|consen 398 ITSFSISKDGKLALVNLQ----DQEIHLWDLEEN 427 (519)
T ss_pred eeEEEEcCCCcEEEEEcc----cCeeEEeecchh
Confidence 899999999998766543 357777777533
No 184
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=98.45 E-value=0.0001 Score=70.83 Aligned_cols=182 Identities=9% Similarity=0.014 Sum_probs=98.8
Q ss_pred EEEEEECCCCceE-EEEcccCCCCCCCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCceee
Q 008873 60 RLGVVSAAGGPVS-WMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVN 138 (550)
Q Consensus 60 ~l~~~d~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~ 138 (550)
.|.++|+.+++.. .+.. ......+.|+|||+.++...... ..++.++.++++..........
T Consensus 96 ~l~~~d~~~~~~~~~~~~----------~~~~~~~~~~~dg~~l~~~~~~~---~~~~~~d~~~~~~~~~~~~~~~---- 158 (300)
T TIGR03866 96 LVTVIDIETRKVLAEIPV----------GVEPEGMAVSPDGKIVVNTSETT---NMAHFIDTKTYEIVDNVLVDQR---- 158 (300)
T ss_pred eEEEEECCCCeEEeEeeC----------CCCcceEEECCCCCEEEEEecCC---CeEEEEeCCCCeEEEEEEcCCC----
Confidence 5788899876542 2211 11234579999999877664322 2356668877765332211100
Q ss_pred ccCccccCCCCCccCCCc-EEEEE-ccCCccEEEEEeCCCcee-eccccc-------CeEEEEEEeEeecCCEEEEEEcC
Q 008873 139 LHDCFTPLDKGVTKYSGG-FIWAS-EKTGFRHLYLHDINGTCL-GPITEG-------DWMVEQIVGVNEASGQVYFTGTL 208 (550)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~-~~~~s-~~~g~~~l~~~~~~~~~~-~~lT~~-------~~~~~~~~~~s~dg~~l~f~~~~ 208 (550)
+. . ..+++++ .++++ ..+| .|+++++++++. +.++.. ......+ .++++|+.+++....
T Consensus 159 --~~--~----~~~s~dg~~l~~~~~~~~--~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i-~~s~dg~~~~~~~~~ 227 (300)
T TIGR03866 159 --PR--F----AEFTADGKELWVSSEIGG--TVSVIDVATRKVIKKITFEIPGVHPEAVQPVGI-KLTKDGKTAFVALGP 227 (300)
T ss_pred --cc--E----EEECCCCCEEEEEcCCCC--EEEEEEcCcceeeeeeeecccccccccCCccce-EECCCCCEEEEEcCC
Confidence 00 0 0234444 44443 3333 577888776543 334311 0111123 489999987766543
Q ss_pred CCCceeEEEEEEeCCCCCCCCCCCeeeCCCCceEEEEECCCCCEEEEeecCCCCCCEEEEEEcCCCceeEecc
Q 008873 209 DGPLESHLYCAKLYPDWNHTLEAPVKLTNGKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLY 281 (550)
Q Consensus 209 ~~~~~~~l~~v~~~~~g~~~~~~~~~lt~~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~~~~~l~ 281 (550)
.+ .+..+++. .+. ....+..+.....+.|+|+|++|+.... .-..|.++|+.+++.++.+.
T Consensus 228 ~~----~i~v~d~~-~~~----~~~~~~~~~~~~~~~~~~~g~~l~~~~~---~~~~i~v~d~~~~~~~~~~~ 288 (300)
T TIGR03866 228 AN----RVAVVDAK-TYE----VLDYLLVGQRVWQLAFTPDEKYLLTTNG---VSNDVSVIDVAALKVIKSIK 288 (300)
T ss_pred CC----eEEEEECC-CCc----EEEEEEeCCCcceEEECCCCCEEEEEcC---CCCeEEEEECCCCcEEEEEE
Confidence 32 35556762 221 2223333334666789999998754422 12379999998887655553
No 185
>PF05677 DUF818: Chlamydia CHLPS protein (DUF818); InterPro: IPR008536 This family of unknown function includes several Chlamydia CHLPS proteins and Legionella SidB proteins.
Probab=98.41 E-value=3.1e-06 Score=78.38 Aligned_cols=181 Identities=17% Similarity=0.146 Sum_probs=110.0
Q ss_pred CCCCCCeEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCC
Q 008873 293 LQLEPPDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRG 372 (550)
Q Consensus 293 ~~~~~~~~~~~~~~~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG 372 (550)
-.....+++.+.. |+..|....+.-+.. ++.-.|++.-|..+.....-........+.+...+.|.+|+.+||||
T Consensus 107 ~~~~~~kRv~Iq~-D~~~IDt~~I~~~~a----~~~RWiL~s~GNg~~~E~~~~~~~~~~~~~~~ak~~~aNvl~fNYpG 181 (365)
T PF05677_consen 107 DEVSSVKRVPIQY-DGVKIDTMAIHQPEA----KPQRWILVSNGNGECYENRAMLDYKDDWIQRFAKELGANVLVFNYPG 181 (365)
T ss_pred ccccceeeEEEee-CCEEEEEEEeeCCCC----CCCcEEEEEcCChHHhhhhhhhccccHHHHHHHHHcCCcEEEECCCc
Confidence 3445678888887 888888887653332 23356777777543322100111111224555667899999999999
Q ss_pred CCCCchhhHHHHhhccCCCchHHHHHHHHHHHHc-CCCCCCceEEEEechhHHHHHHHHhhCC----CeeEEEEE-cCCc
Q 008873 373 TARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQ-GLAKVGHIGLYGWSYGGYLSAITLARFP----DVFQCAVS-GAPV 446 (550)
Q Consensus 373 ~g~~~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~-~~~d~~~i~i~G~S~GG~~a~~~~~~~~----~~~~~~v~-~~~~ 446 (550)
.|.|..... ..++ ..|..++++||.++ ..+.+++|++.|||.||.++..++.++. +-++-.+. -.++
T Consensus 182 Vg~S~G~~s---~~dL----v~~~~a~v~yL~d~~~G~ka~~Ii~yG~SLGG~Vqa~AL~~~~~~~~dgi~~~~ikDRsf 254 (365)
T PF05677_consen 182 VGSSTGPPS---RKDL----VKDYQACVRYLRDEEQGPKAKNIILYGHSLGGGVQAEALKKEVLKGSDGIRWFLIKDRSF 254 (365)
T ss_pred cccCCCCCC---HHHH----HHHHHHHHHHHHhcccCCChheEEEeeccccHHHHHHHHHhcccccCCCeeEEEEecCCc
Confidence 987754321 2333 78899999999875 3578899999999999999988766531 22232222 2333
Q ss_pred CCcccccchh-------hhhccCCCCCCccccccCChhhhhhcCCCcEEEEecCC
Q 008873 447 TSWDGYDTFY-------TEKYMGLPSEDPVGYEYSSVMHHVHKMKGKLLLVHGMI 494 (550)
Q Consensus 447 ~~~~~~~~~~-------~~~~~g~~~~~~~~~~~~~~~~~~~~i~~P~lii~G~~ 494 (550)
.+.......+ .-+.+| +..+.....+++.+|-+++|+.+
T Consensus 255 ssl~~vas~~~~~~~~~l~~l~g---------WnidS~K~s~~l~cpeIii~~~d 300 (365)
T PF05677_consen 255 SSLAAVASQFFGPIGKLLIKLLG---------WNIDSAKNSEKLQCPEIIIYGVD 300 (365)
T ss_pred chHHHHHHHHHHHHHHHHHHHhc---------cCCCchhhhccCCCCeEEEeccc
Confidence 3322111111 111111 22334567788899999999874
No 186
>COG3545 Predicted esterase of the alpha/beta hydrolase fold [General function prediction only]
Probab=98.41 E-value=2.9e-05 Score=64.85 Aligned_cols=135 Identities=15% Similarity=0.047 Sum_probs=85.7
Q ss_pred CchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCcccccchhhhhccCCCCCCccc
Q 008873 391 IDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTFYTEKYMGLPSEDPVG 470 (550)
Q Consensus 391 ~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 470 (550)
-.++|-++.+...+..- ++.+.|++||.|+..++..+.+....++++++++|.-- .. +......
T Consensus 41 P~~~dWi~~l~~~v~a~---~~~~vlVAHSLGc~~v~h~~~~~~~~V~GalLVAppd~-~~------------~~~~~~~ 104 (181)
T COG3545 41 PVLDDWIARLEKEVNAA---EGPVVLVAHSLGCATVAHWAEHIQRQVAGALLVAPPDV-SR------------PEIRPKH 104 (181)
T ss_pred CCHHHHHHHHHHHHhcc---CCCeEEEEecccHHHHHHHHHhhhhccceEEEecCCCc-cc------------cccchhh
Confidence 34566666555444332 34599999999999999999877668899999998631 11 0000111
Q ss_pred cccCChhhhhhcCCCcEEEEecCCCCCCChHHHHHHHHHHHHcCCCeEEEEcCCCCCcC--CCCCcHHHHHHHHHHHHH
Q 008873 471 YEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMP--RRHRDRIYMEERIWEFIE 547 (550)
Q Consensus 471 ~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p~~~H~~--~~~~~~~~~~~~~~~fl~ 547 (550)
.-.+++ ....++.-|.++++..+|+.++++.+..+.+++ ...++....+||.. .+.....+.+..+.+|+-
T Consensus 105 ~~tf~~-~p~~~lpfps~vvaSrnDp~~~~~~a~~~a~~w-----gs~lv~~g~~GHiN~~sG~g~wpeg~~~l~~~~s 177 (181)
T COG3545 105 LMTFDP-IPREPLPFPSVVVASRNDPYVSYEHAEDLANAW-----GSALVDVGEGGHINAESGFGPWPEGYALLAQLLS 177 (181)
T ss_pred ccccCC-CccccCCCceeEEEecCCCCCCHHHHHHHHHhc-----cHhheecccccccchhhcCCCcHHHHHHHHHHhh
Confidence 111111 112333458999999999999999999999887 34567788888864 122334444555555543
No 187
>COG3243 PhaC Poly(3-hydroxyalkanoate) synthetase [Lipid metabolism]
Probab=98.41 E-value=3.6e-06 Score=80.05 Aligned_cols=126 Identities=18% Similarity=0.106 Sum_probs=78.5
Q ss_pred EEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCchhhHHHHhhccCC
Q 008873 311 LYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGR 390 (550)
Q Consensus 311 l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~~~~~~~~~~~~~ 390 (550)
+....|.|.... .-+.|+++ +|---....+.+- ..-..+..+|.++|..|..++.++-...-. ..++.+
T Consensus 93 ~~liqy~p~~e~--v~~~PlLi-VpP~iNk~yi~Dl--~~~~s~V~~l~~~g~~vfvIsw~nPd~~~~------~~~~ed 161 (445)
T COG3243 93 LELIQYKPLTEK--VLKRPLLI-VPPWINKFYILDL--SPEKSLVRWLLEQGLDVFVISWRNPDASLA------AKNLED 161 (445)
T ss_pred hhhhccCCCCCc--cCCCceEe-eccccCceeEEeC--CCCccHHHHHHHcCCceEEEeccCchHhhh------hccHHH
Confidence 334455565431 23567766 4543222221111 122345889999999999999986543221 112222
Q ss_pred CchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhCCCe-eEEEEEcCCcCCc
Q 008873 391 IDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDV-FQCAVSGAPVTSW 449 (550)
Q Consensus 391 ~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~-~~~~v~~~~~~~~ 449 (550)
+..+++..+++.+++.. ..++|-++|+|.||.++..+++.++.+ ++.+.......|+
T Consensus 162 Yi~e~l~~aid~v~~it--g~~~InliGyCvGGtl~~~ala~~~~k~I~S~T~lts~~DF 219 (445)
T COG3243 162 YILEGLSEAIDTVKDIT--GQKDINLIGYCVGGTLLAAALALMAAKRIKSLTLLTSPVDF 219 (445)
T ss_pred HHHHHHHHHHHHHHHHh--CccccceeeEecchHHHHHHHHhhhhcccccceeeecchhh
Confidence 22456677888877764 236899999999999999999887766 7777776655554
No 188
>KOG3253 consensus Predicted alpha/beta hydrolase [General function prediction only]
Probab=98.37 E-value=6.9e-06 Score=80.82 Aligned_cols=167 Identities=19% Similarity=0.133 Sum_probs=103.7
Q ss_pred CceEEEEEcCCCCceeecccccccchhHhHHHHhCC--cEEEEECCCC-CCCCchhhHHHHhhccCCCchHHHHHHHHHH
Q 008873 327 PYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKG--ILVWKLDNRG-TARRGLKFEASIKHNCGRIDAEDQLTGAEWL 403 (550)
Q Consensus 327 ~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G--~~vv~~d~rG-~g~~~~~~~~~~~~~~~~~~~~D~~~~~~~l 403 (550)
-.|++++.||.|... -...|...| .+.|.-.| ..|.++|++. .||.+.... .+-++.+.++.
T Consensus 175 ~spl~i~aps~p~ap-~tSd~~~~w---qs~lsl~gevvev~tfdl~n~igG~nI~h~-----------ae~~vSf~r~k 239 (784)
T KOG3253|consen 175 ASPLAIKAPSTPLAP-KTSDRMWSW---QSRLSLKGEVVEVPTFDLNNPIGGANIKHA-----------AEYSVSFDRYK 239 (784)
T ss_pred CCceEEeccCCCCCC-ccchHHHhH---HHHHhhhceeeeeccccccCCCCCcchHHH-----------HHHHHHHhhhh
Confidence 348999999988221 123333233 33343333 5567788774 233221111 33455555543
Q ss_pred HH--cCCCCCCceEEEEechhHHHHHHHHhhCCCe-eEEEEEcCCcCCcccccchhhhhccCCCCCCccccccCChhhhh
Q 008873 404 IK--QGLAKVGHIGLYGWSYGGYLSAITLARFPDV-FQCAVSGAPVTSWDGYDTFYTEKYMGLPSEDPVGYEYSSVMHHV 480 (550)
Q Consensus 404 ~~--~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 480 (550)
.. .+......|+|+|+|||+.++.++...+.+. +.|.|++.=..+ ..- | + + ...-+.+
T Consensus 240 vlei~gefpha~IiLvGrsmGAlVachVSpsnsdv~V~~vVCigypl~-----~vd-----g-p----r----girDE~L 300 (784)
T KOG3253|consen 240 VLEITGEFPHAPIILVGRSMGALVACHVSPSNSDVEVDAVVCIGYPLD-----TVD-----G-P----R----GIRDEAL 300 (784)
T ss_pred hhhhhccCCCCceEEEecccCceeeEEeccccCCceEEEEEEeccccc-----CCC-----c-c----c----CCcchhh
Confidence 32 3445567899999999988887777655443 566666431110 000 0 0 0 1122456
Q ss_pred hcCCCcEEEEecCCCCCCChHHHHHHHHHHHHcCCCeEEEEcCCCCCcCC
Q 008873 481 HKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPR 530 (550)
Q Consensus 481 ~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p~~~H~~~ 530 (550)
-.++.|+|++.|-+|..+++...+++.+++++ +++++++.+++|.+.
T Consensus 301 ldmk~PVLFV~Gsnd~mcspn~ME~vreKMqA---~~elhVI~~adhsma 347 (784)
T KOG3253|consen 301 LDMKQPVLFVIGSNDHMCSPNSMEEVREKMQA---EVELHVIGGADHSMA 347 (784)
T ss_pred HhcCCceEEEecCCcccCCHHHHHHHHHHhhc---cceEEEecCCCcccc
Confidence 67789999999999999999999999988854 578999999999984
No 189
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=98.33 E-value=5.8e-05 Score=67.01 Aligned_cols=144 Identities=10% Similarity=0.069 Sum_probs=82.0
Q ss_pred EEEEECCCCeEEEEEEecC--C------CceEEEEEECCCCceEEEEEeecCceeeccCccccCCCCCccCCCc--EEEE
Q 008873 91 ARVNWMHGNILTAQVLNRS--Q------TKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYSGG--FIWA 160 (550)
Q Consensus 91 ~~~~wspDg~~i~~~~~r~--~------~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 160 (550)
..+.|+|+|+.|+....+. . ....||.++..+.....+.-..... +.. + .|+|++ |+++
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~-I~~---~-------~WsP~g~~favi 77 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGP-IHD---V-------AWSPNGNEFAVI 77 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCc-eEE---E-------EECcCCCEEEEE
Confidence 4578999999665544421 1 2468999988887766654322211 110 1 345544 6555
Q ss_pred EccCCccEEEEEeCCCceeecccccCeEEEEEEeEeecCCEEEEEEcCCCCceeEEEEEEeCCCCCCCCCCCeeeCC--C
Q 008873 161 SEKTGFRHLYLHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTN--G 238 (550)
Q Consensus 161 s~~~g~~~l~~~~~~~~~~~~lT~~~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~~v~~~~~g~~~~~~~~~lt~--~ 238 (550)
... -...+-+++.++.....+-.+. ...+ .|||+|+.|++.+..+..+...+| +. .. .+.+.. .
T Consensus 78 ~g~-~~~~v~lyd~~~~~i~~~~~~~--~n~i-~wsP~G~~l~~~g~~n~~G~l~~w--d~--~~------~~~i~~~~~ 143 (194)
T PF08662_consen 78 YGS-MPAKVTLYDVKGKKIFSFGTQP--RNTI-SWSPDGRFLVLAGFGNLNGDLEFW--DV--RK------KKKISTFEH 143 (194)
T ss_pred Ecc-CCcccEEEcCcccEeEeecCCC--ceEE-EECCCCCEEEEEEccCCCcEEEEE--EC--CC------CEEeecccc
Confidence 421 1125666676655444443322 2333 599999999988765433344555 55 21 122222 2
Q ss_pred CceEEEEECCCCCEEEEeecC
Q 008873 239 KGKHVAVLDHNMRNFVDFHDS 259 (550)
Q Consensus 239 ~~~~~~~~s~dg~~l~~~~s~ 259 (550)
.....+.|||||++++...+.
T Consensus 144 ~~~t~~~WsPdGr~~~ta~t~ 164 (194)
T PF08662_consen 144 SDATDVEWSPDGRYLATATTS 164 (194)
T ss_pred CcEEEEEEcCCCCEEEEEEec
Confidence 245667899999999876654
No 190
>PRK13616 lipoprotein LpqB; Provisional
Probab=98.21 E-value=9.7e-05 Score=76.67 Aligned_cols=162 Identities=10% Similarity=0.043 Sum_probs=95.4
Q ss_pred ceeEEEEECCCCeEEEEEEecC----CCceEEEEEECCCCceEEEEEeecCceeeccCccccCCCCCccCCCc--E----
Q 008873 88 EYLARVNWMHGNILTAQVLNRS----QTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYSGG--F---- 157 (550)
Q Consensus 88 ~~~~~~~wspDg~~i~~~~~r~----~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~---- 157 (550)
..+.+++.||||+.++++..+. ...+.||+++. +|+.++++..... ..| .|++++ +
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~-gg~~~~lt~g~~~----t~P---------sWspDG~~lw~v~ 415 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPL-GGVAVQVLEGHSL----TRP---------SWSLDADAVWVVV 415 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeC-CCcceeeecCCCC----CCc---------eECCCCCceEEEe
Confidence 4678899999999888886321 23568999997 5556777653211 111 344442 3
Q ss_pred -----EEEEccCCccEEEEEeCCCceeecccccCeEEEEEEeEeecCCEEEEEEcCCCCceeEEEE--EEeCCCCCCCCC
Q 008873 158 -----IWASEKTGFRHLYLHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYC--AKLYPDWNHTLE 230 (550)
Q Consensus 158 -----~~~s~~~g~~~l~~~~~~~~~~~~lT~~~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~~--v~~~~~g~~~~~ 230 (550)
.+++...+-.+||+++.++++.++ ..+..+..+. ||+||++|+|+.. .+||. |--..+|.....
T Consensus 416 dg~~~~~v~~~~~~gql~~~~vd~ge~~~--~~~g~Issl~-wSpDG~RiA~i~~------g~v~Va~Vvr~~~G~~~l~ 486 (591)
T PRK13616 416 DGNTVVRVIRDPATGQLARTPVDASAVAS--RVPGPISELQ-LSRDGVRAAMIIG------GKVYLAVVEQTEDGQYALT 486 (591)
T ss_pred cCcceEEEeccCCCceEEEEeccCchhhh--ccCCCcCeEE-ECCCCCEEEEEEC------CEEEEEEEEeCCCCceeec
Confidence 333334455689988888877665 2222355665 9999999999983 24555 332123321223
Q ss_pred CCeeeCCCCc--eEEEEECCCCCEEEEeecCCCCCCEEEEEEcCCCce
Q 008873 231 APVKLTNGKG--KHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSL 276 (550)
Q Consensus 231 ~~~~lt~~~~--~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~~ 276 (550)
.++.|...-+ ..+..|..++. |+...++.. ..++.+++ +|..
T Consensus 487 ~~~~l~~~l~~~~~~l~W~~~~~-L~V~~~~~~--~~v~~v~v-DG~~ 530 (591)
T PRK13616 487 NPREVGPGLGDTAVSLDWRTGDS-LVVGRSDPE--HPVWYVNL-DGSN 530 (591)
T ss_pred ccEEeecccCCccccceEecCCE-EEEEecCCC--CceEEEec-CCcc
Confidence 3445554322 25567988887 444434333 34688887 4653
No 191
>PF10142 PhoPQ_related: PhoPQ-activated pathogenicity-related protein; InterPro: IPR009199 Proteins in this entry are believed to play a role in virulence/pathogenicity in Salmonella. Salmonella typhi PqaA has been shown to be activated by PhoP/Q two-component regulatory system, which regulates many virulence genes []. It has been also shown to confer resistance to antimicrobial peptides (melittin) []. Members of this family are predicted to belong to the alpha/beta hydrolase domain superfamily.
Probab=98.18 E-value=0.00018 Score=69.36 Aligned_cols=134 Identities=13% Similarity=0.071 Sum_probs=94.5
Q ss_pred CCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEc-CCcCCccc--------ccchhhhh---cc--CCC--CCC---
Q 008873 407 GLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSG-APVTSWDG--------YDTFYTEK---YM--GLP--SED--- 467 (550)
Q Consensus 407 ~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~-~~~~~~~~--------~~~~~~~~---~~--g~~--~~~--- 467 (550)
..++.++.+|.|.|-=|..++.+++. .+|++|++.+ .++.++.. |...|... |. |.. -..
T Consensus 167 ~~~~i~~FvV~GaSKRGWTtWltaa~-D~RV~aivP~Vid~LN~~~~l~h~y~~yG~~ws~a~~dY~~~gi~~~l~tp~f 245 (367)
T PF10142_consen 167 FGVNIEKFVVTGASKRGWTTWLTAAV-DPRVKAIVPIVIDVLNMKANLEHQYRSYGGNWSFAFQDYYNEGITQQLDTPEF 245 (367)
T ss_pred cCCCccEEEEeCCchHhHHHHHhhcc-CcceeEEeeEEEccCCcHHHHHHHHHHhCCCCccchhhhhHhCchhhcCCHHH
Confidence 45678999999999999999988884 5677776653 33333321 11000000 00 100 011
Q ss_pred ccccccCChhhhhhcCCCcEEEEecCCCCCCChHHHHHHHHHHHHcCCCeEEEEcCCCCCcCCCCCcHHHHHHHHHHHHH
Q 008873 468 PVGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIE 547 (550)
Q Consensus 468 ~~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p~~~H~~~~~~~~~~~~~~~~~fl~ 547 (550)
.+.....+|+.+.++++.|-|||.|.+|+...+..+.-++..|. .+..+..+|+++|+... ....+.+..|+.
T Consensus 246 ~~L~~ivDP~~Y~~rL~~PK~ii~atgDeFf~pD~~~~y~d~L~---G~K~lr~vPN~~H~~~~----~~~~~~l~~f~~ 318 (367)
T PF10142_consen 246 DKLMQIVDPYSYRDRLTMPKYIINATGDEFFVPDSSNFYYDKLP---GEKYLRYVPNAGHSLIG----SDVVQSLRAFYN 318 (367)
T ss_pred HHHHHhcCHHHHHHhcCccEEEEecCCCceeccCchHHHHhhCC---CCeeEEeCCCCCcccch----HHHHHHHHHHHH
Confidence 12335568999999999999999999999999999999999883 36789999999999855 556677888876
Q ss_pred H
Q 008873 548 R 548 (550)
Q Consensus 548 ~ 548 (550)
.
T Consensus 319 ~ 319 (367)
T PF10142_consen 319 R 319 (367)
T ss_pred H
Confidence 5
No 192
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=98.16 E-value=0.0024 Score=60.08 Aligned_cols=201 Identities=15% Similarity=0.082 Sum_probs=109.2
Q ss_pred cceEEEcCCCCeEEEEEEeCCCCCeEEEeecCCCCCCCCCcccccCCCCCCCCCeEEEEEEECCCCceEEEEcccCCCCC
Q 008873 4 KTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQ 83 (550)
Q Consensus 4 ~~~~~wSPdg~~lay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~ 83 (550)
-.++.|+|||+.|+....+ ..+.+|++++++.....
T Consensus 12 i~~~~~~~~~~~l~~~~~~------------------------------------g~i~i~~~~~~~~~~~~-------- 47 (289)
T cd00200 12 VTCVAFSPDGKLLATGSGD------------------------------------GTIKVWDLETGELLRTL-------- 47 (289)
T ss_pred EEEEEEcCCCCEEEEeecC------------------------------------cEEEEEEeeCCCcEEEE--------
Confidence 3678899999999876432 24677888876533221
Q ss_pred CCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCceeeccCccccCCCCCccCCC-cEEEEEc
Q 008873 84 NYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYSG-GFIWASE 162 (550)
Q Consensus 84 ~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~s~ 162 (550)
......+..+.|+|+++.++..... ..|++.+..+++........... +. .+ .+.++ .+++.+.
T Consensus 48 ~~~~~~i~~~~~~~~~~~l~~~~~~----~~i~i~~~~~~~~~~~~~~~~~~-i~---~~-------~~~~~~~~~~~~~ 112 (289)
T cd00200 48 KGHTGPVRDVAASADGTYLASGSSD----KTIRLWDLETGECVRTLTGHTSY-VS---SV-------AFSPDGRILSSSS 112 (289)
T ss_pred ecCCcceeEEEECCCCCEEEEEcCC----CeEEEEEcCcccceEEEeccCCc-EE---EE-------EEcCCCCEEEEec
Confidence 1123345678999999877776543 24777788776433222211110 00 01 12333 3555554
Q ss_pred cCCccEEEEEeCCCce-eecccccCeEEEEEEeEeecCCEEEEEEcCCCCceeEEEEEEeCCCCCCCCCCCeeeCCCC-c
Q 008873 163 KTGFRHLYLHDINGTC-LGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTNGK-G 240 (550)
Q Consensus 163 ~~g~~~l~~~~~~~~~-~~~lT~~~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~~v~~~~~g~~~~~~~~~lt~~~-~ 240 (550)
.+| .|.+++...++ ...+....-.+... .|+++++.++.. ..++ .++..++. .+. ....+.... .
T Consensus 113 ~~~--~i~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~~~~l~~~-~~~~----~i~i~d~~-~~~----~~~~~~~~~~~ 179 (289)
T cd00200 113 RDK--TIKVWDVETGKCLTTLRGHTDWVNSV-AFSPDGTFVASS-SQDG----TIKLWDLR-TGK----CVATLTGHTGE 179 (289)
T ss_pred CCC--eEEEEECCCcEEEEEeccCCCcEEEE-EEcCcCCEEEEE-cCCC----cEEEEEcc-ccc----cceeEecCccc
Confidence 334 57777766433 33333233234444 488886555443 3232 34444552 121 222333222 3
Q ss_pred eEEEEECCCCCEEEEeecCCCCCCEEEEEEcCCCceeEec
Q 008873 241 KHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPL 280 (550)
Q Consensus 241 ~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~~~~~l 280 (550)
...+.++|+++.+++... ...+.++++.+++....+
T Consensus 180 i~~~~~~~~~~~l~~~~~----~~~i~i~d~~~~~~~~~~ 215 (289)
T cd00200 180 VNSVAFSPDGEKLLSSSS----DGTIKLWDLSTGKCLGTL 215 (289)
T ss_pred cceEEECCCcCEEEEecC----CCcEEEEECCCCceecch
Confidence 566789999988776644 347888888766544433
No 193
>PF12048 DUF3530: Protein of unknown function (DUF3530); InterPro: IPR022529 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 272 to 336 amino acids in length. These proteins are distantly related to alpa/beta hydrolases so they may act as enzymes.
Probab=98.16 E-value=0.00035 Score=66.75 Aligned_cols=221 Identities=16% Similarity=0.123 Sum_probs=129.1
Q ss_pred CCCCCCeEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCC
Q 008873 293 LQLEPPDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRG 372 (550)
Q Consensus 293 ~~~~~~~~~~~~~~~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG 372 (550)
..++.-|.+++.. ++.++ -.+++|.... +++.+||++||-..+. .|......+.+.|.+.|+.++++-.+.
T Consensus 57 ~~lp~~e~~~L~~-~~~~f-laL~~~~~~~---~~~G~vIilp~~g~~~----d~p~~i~~LR~~L~~~GW~Tlsit~P~ 127 (310)
T PF12048_consen 57 RYLPADEVQWLQA-GEERF-LALWRPANSA---KPQGAVIILPDWGEHP----DWPGLIAPLRRELPDHGWATLSITLPD 127 (310)
T ss_pred hhCCHhhcEEeec-CCEEE-EEEEecccCC---CCceEEEEecCCCCCC----CcHhHHHHHHHHhhhcCceEEEecCCC
Confidence 3444456666665 33333 4567776542 5678999999954443 243344556788899999999988775
Q ss_pred CCCC---------------chhh-H-------------HHHhhccCCCchHHHHHHHHHHHHcCCCCCCceEEEEechhH
Q 008873 373 TARR---------------GLKF-E-------------ASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGG 423 (550)
Q Consensus 373 ~g~~---------------~~~~-~-------------~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG 423 (550)
--.. +..- . .............-+.+++.++.+++ ..+|+|+||+.|+
T Consensus 128 ~~~~~~p~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ari~Aa~~~~~~~~---~~~ivlIg~G~gA 204 (310)
T PF12048_consen 128 PAPPASPNRATEAEEVPSAGDQQLSQPSDEPSPASAQEAEAREAYEERLFARIEAAIAFAQQQG---GKNIVLIGHGTGA 204 (310)
T ss_pred cccccCCccCCCCCCCCCCCCCCcCCCCCCCccccccHhHHhHHHHHHHHHHHHHHHHHHHhcC---CceEEEEEeChhH
Confidence 1000 0000 0 00000000011233455666666665 2459999999999
Q ss_pred HHHHHHHhhCCC-eeEEEEEcCCcCCcccccchhhhhccCCCCCCccccccCChhhhhhcCCCcEEEEecCCCCCCChHH
Q 008873 424 YLSAITLARFPD-VFQCAVSGAPVTSWDGYDTFYTEKYMGLPSEDPVGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRH 502 (550)
Q Consensus 424 ~~a~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~ 502 (550)
++++.++...+. ...++|.+++...... ........+.+++.|+|=|++.. ... ..+
T Consensus 205 ~~~~~~la~~~~~~~daLV~I~a~~p~~~--------------------~n~~l~~~la~l~iPvLDi~~~~-~~~-~~~ 262 (310)
T PF12048_consen 205 GWAARYLAEKPPPMPDALVLINAYWPQPD--------------------RNPALAEQLAQLKIPVLDIYSAD-NPA-SQQ 262 (310)
T ss_pred HHHHHHHhcCCCcccCeEEEEeCCCCcch--------------------hhhhHHHHhhccCCCEEEEecCC-ChH-HHH
Confidence 999999987754 4678888876422100 01223456778899999999877 322 222
Q ss_pred HHHHHHHHHHcC--CCeEEEEcCCCCCcCCCCCcHHHHHHHHHHHHHHh
Q 008873 503 TARLINALVAAR--KPYEILIFPDERHMPRRHRDRIYMEERIWEFIERT 549 (550)
Q Consensus 503 ~~~~~~~l~~~~--~~~~~~~~p~~~H~~~~~~~~~~~~~~~~~fl~~~ 549 (550)
.....+.+.++. ..++-...++..|.... ....+.++|..||.++
T Consensus 263 ~a~~R~~~a~r~~~~~YrQ~~L~~~~~~~~~--~~~~l~~rIrGWL~~~ 309 (310)
T PF12048_consen 263 TAKQRKQAAKRNKKPDYRQIQLPGLPDNPSG--WQEQLLRRIRGWLKRH 309 (310)
T ss_pred HHHHHHHHHHhccCCCceeEecCCCCCChhh--HHHHHHHHHHHHHHhh
Confidence 223323332222 35666667777776533 2233889999999875
No 194
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.14 E-value=0.0069 Score=56.30 Aligned_cols=208 Identities=18% Similarity=0.215 Sum_probs=113.5
Q ss_pred EEEEEECCCCceEEEEcccCCCCCCCCCceeEEEEEC-CCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCceee
Q 008873 60 RLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWM-HGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVN 138 (550)
Q Consensus 60 ~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ws-pDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~ 138 (550)
.|+.++.++++...+.+. .. ...... +||++++.. ... +.+++.++|+.+.+.......
T Consensus 23 ~i~~~~~~~~~~~~~~~~----------~~-~G~~~~~~~g~l~v~~--~~~----~~~~d~~~g~~~~~~~~~~~~--- 82 (246)
T PF08450_consen 23 RIYRVDPDTGEVEVIDLP----------GP-NGMAFDRPDGRLYVAD--SGG----IAVVDPDTGKVTVLADLPDGG--- 82 (246)
T ss_dssp EEEEEETTTTEEEEEESS----------SE-EEEEEECTTSEEEEEE--TTC----EEEEETTTTEEEEEEEEETTC---
T ss_pred EEEEEECCCCeEEEEecC----------CC-ceEEEEccCCEEEEEE--cCc----eEEEecCCCcEEEEeeccCCC---
Confidence 578899999888766552 12 334455 787765443 221 455599999988887753210
Q ss_pred ccCccccCCCCCccCCCcEEEEEccCC-----c--cEEEEEeCCCceeecccccCeEEEEEEeEeecCCEEEEEEcCCCC
Q 008873 139 LHDCFTPLDKGVTKYSGGFIWASEKTG-----F--RHLYLHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGP 211 (550)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~s~~~g-----~--~~l~~~~~~~~~~~~lT~~~~~~~~~~~~s~dg~~l~f~~~~~~~ 211 (550)
.+...+.+. ..++++-+|+++... . ..||+++.+ ++.+.+..+-.....+ .|++|++.||++....+
T Consensus 83 -~~~~~~ND~--~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~~pNGi-~~s~dg~~lyv~ds~~~- 156 (246)
T PF08450_consen 83 -VPFNRPNDV--AVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLGFPNGI-AFSPDGKTLYVADSFNG- 156 (246)
T ss_dssp -SCTEEEEEE--EE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEESSEEEE-EEETTSSEEEEEETTTT-
T ss_pred -cccCCCceE--EEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecCcccccce-EECCcchheeecccccc-
Confidence 011111111 224555455544321 2 579999988 5555554432222344 49999999998866543
Q ss_pred ceeEEEEEEeCCCCCCCCCCCeee---CCCCc-eEEEEECCCCCEEEEeecCCCCCCEEEEEEcCCCceeEeccCCCCCh
Q 008873 212 LESHLYCAKLYPDWNHTLEAPVKL---TNGKG-KHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLYEQPLTV 287 (550)
Q Consensus 212 ~~~~l~~v~~~~~g~~~~~~~~~l---t~~~~-~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~~~~~l~~~~~~~ 287 (550)
.|+++++...+. .....+.+ ....+ -..+.++.+|...+.... ...|++++.. |+.+..+.-.
T Consensus 157 ---~i~~~~~~~~~~-~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~----~~~I~~~~p~-G~~~~~i~~p---- 223 (246)
T PF08450_consen 157 ---RIWRFDLDADGG-ELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWG----GGRIVVFDPD-GKLLREIELP---- 223 (246)
T ss_dssp ---EEEEEEEETTTC-CEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEET----TTEEEEEETT-SCEEEEEE-S----
T ss_pred ---eeEEEecccccc-ceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcC----CCEEEEECCC-ccEEEEEcCC----
Confidence 588888732232 00011222 22222 445678888865544332 2488999874 7755544321
Q ss_pred hhhhcCCCCCCeEEEEEcCCCcEEEE
Q 008873 288 PRIKRLQLEPPDIVQIQANDGTVLYG 313 (550)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~g~~l~~ 313 (550)
...+..+.|-..+..+|..
T Consensus 224 -------~~~~t~~~fgg~~~~~L~v 242 (246)
T PF08450_consen 224 -------VPRPTNCAFGGPDGKTLYV 242 (246)
T ss_dssp -------SSSEEEEEEESTTSSEEEE
T ss_pred -------CCCEEEEEEECCCCCEEEE
Confidence 1134566665555555543
No 195
>KOG1516 consensus Carboxylesterase and related proteins [General function prediction only]
Probab=98.09 E-value=8.5e-06 Score=85.47 Aligned_cols=129 Identities=19% Similarity=0.180 Sum_probs=83.8
Q ss_pred EEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCC-CCCchhhHHHHhhccC
Q 008873 311 LYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGT-ARRGLKFEASIKHNCG 389 (550)
Q Consensus 311 l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~-g~~~~~~~~~~~~~~~ 389 (550)
+...+|.|...... + +||+|++|||.........+ ........+..+..+||.++||-. =|+...-.... .|
T Consensus 97 LylNV~tp~~~~~~-~-~pV~V~iHGG~~~~gs~~~~--~~~~~~~~~~~~~VVvVt~~YRLG~lGF~st~d~~~---~g 169 (545)
T KOG1516|consen 97 LYLNVYTPQGCSES-K-LPVMVYIHGGGFQFGSASSF--EIISPAYVLLLKDVVVVTINYRLGPLGFLSTGDSAA---PG 169 (545)
T ss_pred ceEEEeccCCCccC-C-CCEEEEEeCCceeeccccch--hhcCchhccccCCEEEEEecccceeceeeecCCCCC---CC
Confidence 77788888764211 2 89999999986432211111 111223455567899999999942 11100000111 24
Q ss_pred CCchHHHHHHHHHHHHc---CCCCCCceEEEEechhHHHHHHHHhh--CCCeeEEEEEcCCc
Q 008873 390 RIDAEDQLTGAEWLIKQ---GLAKVGHIGLYGWSYGGYLSAITLAR--FPDVFQCAVSGAPV 446 (550)
Q Consensus 390 ~~~~~D~~~~~~~l~~~---~~~d~~~i~i~G~S~GG~~a~~~~~~--~~~~~~~~v~~~~~ 446 (550)
...+.|+..|++|+.+. -.-|+++|.|+|||.||..+..++.. ...+|+.+|..++.
T Consensus 170 N~gl~Dq~~AL~wv~~~I~~FGGdp~~vTl~G~saGa~~v~~l~~Sp~s~~LF~~aI~~SG~ 231 (545)
T KOG1516|consen 170 NLGLFDQLLALRWVKDNIPSFGGDPKNVTLFGHSAGAASVSLLTLSPHSRGLFHKAISMSGN 231 (545)
T ss_pred cccHHHHHHHHHHHHHHHHhcCCCCCeEEEEeechhHHHHHHHhcCHhhHHHHHHHHhhccc
Confidence 45588999999999886 23599999999999999999777653 12477777777764
No 196
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.06 E-value=0.0027 Score=64.76 Aligned_cols=184 Identities=11% Similarity=0.074 Sum_probs=95.9
Q ss_pred EEEEEECC-CCceEEEEcccCCCCCCCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCceee
Q 008873 60 RLGVVSAA-GGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVN 138 (550)
Q Consensus 60 ~l~~~d~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~ 138 (550)
.|++||+. .+...+ ++ ..-..++...+|+|+|+.++...... .+.+-++.+|++..........-..
T Consensus 226 tiriwd~~~~~~~~~-~l-------~gH~~~v~~~~f~p~g~~i~Sgs~D~----tvriWd~~~~~~~~~l~~hs~~is~ 293 (456)
T KOG0266|consen 226 TLRIWDLKDDGRNLK-TL-------KGHSTYVTSVAFSPDGNLLVSGSDDG----TVRIWDVRTGECVRKLKGHSDGISG 293 (456)
T ss_pred eEEEeeccCCCeEEE-Ee-------cCCCCceEEEEecCCCCEEEEecCCC----cEEEEeccCCeEEEeeeccCCceEE
Confidence 57888994 333322 22 23345778999999997666654433 2666677888876655433221111
Q ss_pred ccCccccCCCCCccCCCc-EEEEEccCCccEEEEEeCCCcee---ecccccCeE-EEEEEeEeecCCEEEEEEcCCCCce
Q 008873 139 LHDCFTPLDKGVTKYSGG-FIWASEKTGFRHLYLHDINGTCL---GPITEGDWM-VEQIVGVNEASGQVYFTGTLDGPLE 213 (550)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~-~~~~s~~~g~~~l~~~~~~~~~~---~~lT~~~~~-~~~~~~~s~dg~~l~f~~~~~~~~~ 213 (550)
. ..++++ ++..+..+| .|.++|..++.. +.+...... ......++|+++.|+..+.+..
T Consensus 294 ----~-------~f~~d~~~l~s~s~d~--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~--- 357 (456)
T KOG0266|consen 294 ----L-------AFSPDGNLLVSASYDG--TIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRT--- 357 (456)
T ss_pred ----E-------EECCCCCEEEEcCCCc--cEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCe---
Confidence 1 123344 555554444 566777767663 233333222 1223458999987765544322
Q ss_pred eEEEEEEeCCCCCCCCCCCeeeCCC-C---ceEEEEECCCCCEEEEeecCCCCCCEEEEEEcCCCceeEeccC
Q 008873 214 SHLYCAKLYPDWNHTLEAPVKLTNG-K---GKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLYE 282 (550)
Q Consensus 214 ~~l~~v~~~~~g~~~~~~~~~lt~~-~---~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~~~~~l~~ 282 (550)
..+|.+.- +. .+...... . ....+..+++++.++-... ...+++.+..++..+..+..
T Consensus 358 ~~~w~l~~---~~----~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~----d~~v~~~~~~s~~~~~~l~~ 419 (456)
T KOG0266|consen 358 LKLWDLRS---GK----SVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSE----DGSVYVWDSSSGGILQRLEG 419 (456)
T ss_pred EEEEEccC---Cc----ceeeecccCCcceeEecccccCCCCeEEEEeC----CceEEEEeCCccchhhhhcC
Confidence 45554432 11 11222211 1 1233345677776543322 24778888876664444443
No 197
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=98.04 E-value=0.0032 Score=61.78 Aligned_cols=169 Identities=10% Similarity=0.092 Sum_probs=81.1
Q ss_pred eEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCceeeccCc-cccCCCCCccCCCc-EEEEEcc-CCc
Q 008873 90 LARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDC-FTPLDKGVTKYSGG-FIWASEK-TGF 166 (550)
Q Consensus 90 ~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~s~~-~g~ 166 (550)
.-++.++|||++++. .+...+.-.+|.++..+++........-+. ..+|+ +. +++++ ++|+... ++.
T Consensus 146 ~H~v~~~pdg~~v~v-~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~--G~GPRh~~-------f~pdg~~~Yv~~e~s~~ 215 (345)
T PF10282_consen 146 PHQVVFSPDGRFVYV-PDLGADRVYVYDIDDDTGKLTPVDSIKVPP--GSGPRHLA-------FSPDGKYAYVVNELSNT 215 (345)
T ss_dssp EEEEEE-TTSSEEEE-EETTTTEEEEEEE-TTS-TEEEEEEEECST--TSSEEEEE-------E-TTSSEEEEEETTTTE
T ss_pred ceeEEECCCCCEEEE-EecCCCEEEEEEEeCCCceEEEeecccccc--CCCCcEEE-------EcCCcCEEEEecCCCCc
Confidence 345789999998754 455556556666666666644322211110 00111 11 23443 6665543 333
Q ss_pred cEEEEEeCCCceeecccc---------cCeEEEEEEeEeecCCEEEEEEcCCCCceeEEEEEEeCCCCCCCCCCCeeeCC
Q 008873 167 RHLYLHDINGTCLGPITE---------GDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTN 237 (550)
Q Consensus 167 ~~l~~~~~~~~~~~~lT~---------~~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~~v~~~~~g~~~~~~~~~lt~ 237 (550)
-.+|.++..++..+.+.. +......+ ..+|||+.||.+....+ ...+|.++. .+|. ......+..
T Consensus 216 v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i-~ispdg~~lyvsnr~~~--sI~vf~~d~-~~g~--l~~~~~~~~ 289 (345)
T PF10282_consen 216 VSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEI-AISPDGRFLYVSNRGSN--SISVFDLDP-ATGT--LTLVQTVPT 289 (345)
T ss_dssp EEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEE-EE-TTSSEEEEEECTTT--EEEEEEECT-TTTT--EEEEEEEEE
T ss_pred EEEEeecccCCceeEEEEeeeccccccccCCceeE-EEecCCCEEEEEeccCC--EEEEEEEec-CCCc--eEEEEEEeC
Confidence 344444433443322211 11123344 48999998887655433 245555543 1232 111222222
Q ss_pred -CCceEEEEECCCCCEEEEeecCCCCCCEEEEEEcCCCc
Q 008873 238 -GKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGS 275 (550)
Q Consensus 238 -~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~ 275 (550)
+..-..+.++|||++|+......+. -.++.+|.++|.
T Consensus 290 ~G~~Pr~~~~s~~g~~l~Va~~~s~~-v~vf~~d~~tG~ 327 (345)
T PF10282_consen 290 GGKFPRHFAFSPDGRYLYVANQDSNT-VSVFDIDPDTGK 327 (345)
T ss_dssp SSSSEEEEEE-TTSSEEEEEETTTTE-EEEEEEETTTTE
T ss_pred CCCCccEEEEeCCCCEEEEEecCCCe-EEEEEEeCCCCc
Confidence 2224566889999988776555443 355666766776
No 198
>COG4947 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.01 E-value=1.9e-05 Score=64.92 Aligned_cols=117 Identities=20% Similarity=0.224 Sum_probs=78.8
Q ss_pred HHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCcccccchhhhhccCCCCCCccccccCChhh
Q 008873 399 GAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTFYTEKYMGLPSEDPVGYEYSSVMH 478 (550)
Q Consensus 399 ~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 478 (550)
.-+|++++.. +.+..+.|.||||+.++....++|++|..+|+.+|+.|.+.+ +|...++...| ++|..
T Consensus 90 yerYv~eEal--pgs~~~sgcsmGayhA~nfvfrhP~lftkvialSGvYdardf--------fg~yyddDv~y--nsP~d 157 (227)
T COG4947 90 YERYVIEEAL--PGSTIVSGCSMGAYHAANFVFRHPHLFTKVIALSGVYDARDF--------FGGYYDDDVYY--NSPSD 157 (227)
T ss_pred HHHHHHHhhc--CCCccccccchhhhhhhhhheeChhHhhhheeecceeeHHHh--------ccccccCceee--cChhh
Confidence 3445655532 356788999999999999999999999999999999875422 22222222222 45544
Q ss_pred hhhcCC----------CcEEEEecCCCCCCChHHHHHHHHHHHHcCCCeEEEEcCCCCCcC
Q 008873 479 HVHKMK----------GKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMP 529 (550)
Q Consensus 479 ~~~~i~----------~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p~~~H~~ 529 (550)
++..+. ..+.+..|..|+..+ +...+.+.|..+.++..+.+..+..|..
T Consensus 158 ylpg~~dp~~l~rlr~~~~vfc~G~e~~~L~--~~~~L~~~l~dKqipaw~~~WggvaHdw 216 (227)
T COG4947 158 YLPGLADPFRLERLRRIDMVFCIGDEDPFLD--NNQHLSRLLSDKQIPAWMHVWGGVAHDW 216 (227)
T ss_pred hccCCcChHHHHHHhhccEEEEecCcccccc--chHHHHHHhccccccHHHHHhccccccc
Confidence 444433 346667788777655 5567777787777887777776666654
No 199
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=97.98 E-value=0.0011 Score=61.84 Aligned_cols=71 Identities=10% Similarity=0.118 Sum_probs=37.7
Q ss_pred eEEEEECCCCCEEEEeecCCCCCCEEEEEEcCCCceeEeccCCCCChhhhhcCCCCCCeEEEEEcCCCcEEEEEEEcC
Q 008873 241 KHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLYEQPLTVPRIKRLQLEPPDIVQIQANDGTVLYGALYKP 318 (550)
Q Consensus 241 ~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~P 318 (550)
...+.||||+++++- .+++. .+.+.+-.+|+-+..+.. .....-...+..-.++-+......+|..|-.+.
T Consensus 370 Vn~V~fSPd~r~IAS--aSFDk--SVkLW~g~tGk~lasfRG---Hv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~t 440 (480)
T KOG0271|consen 370 VNHVSFSPDGRYIAS--ASFDK--SVKLWDGRTGKFLASFRG---HVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRT 440 (480)
T ss_pred eeeEEECCCccEEEE--eeccc--ceeeeeCCCcchhhhhhh---ccceeEEEEeccCccEEEEcCCCceEEEEEeee
Confidence 667799999988742 23333 445555557764333321 112222334444444555555556677776543
No 200
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=97.97 E-value=0.0035 Score=55.66 Aligned_cols=178 Identities=11% Similarity=0.035 Sum_probs=93.7
Q ss_pred EEEEEECCCCceEEEEcccCCCCCCCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCceeec
Q 008873 60 RLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNL 139 (550)
Q Consensus 60 ~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~ 139 (550)
.+.+||...++...-.. ..+....+.|||||+++++..+.. .|-.+|+.+-+... +++-....+
T Consensus 88 ~ir~wd~r~~k~~~~i~---------~~~eni~i~wsp~g~~~~~~~kdD----~it~id~r~~~~~~--~~~~~~e~n- 151 (313)
T KOG1407|consen 88 TIRIWDIRSGKCTARIE---------TKGENINITWSPDGEYIAVGNKDD----RITFIDARTYKIVN--EEQFKFEVN- 151 (313)
T ss_pred eEEEEEeccCcEEEEee---------ccCcceEEEEcCCCCEEEEecCcc----cEEEEEecccceee--hhcccceee-
Confidence 46677888776543221 133445679999999888875433 36677776544322 111110000
Q ss_pred cCccccCCCCCccC-CCcEEEEEccCCccEEEEEeCCCceeeccc---ccCeEEEEEEeEeecCCEEEEEEcCCCCceeE
Q 008873 140 HDCFTPLDKGVTKY-SGGFIWASEKTGFRHLYLHDINGTCLGPIT---EGDWMVEQIVGVNEASGQVYFTGTLDGPLESH 215 (550)
Q Consensus 140 ~~~~~~~~~~~~~~-~~~~~~~s~~~g~~~l~~~~~~~~~~~~lT---~~~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~ 215 (550)
.. .|. ++.+.|.+...|--+|-.++ ..++++ .+.-+.--+ .++|+|++++.-+.+- -..
T Consensus 152 --e~-------~w~~~nd~Fflt~GlG~v~ILsyp----sLkpv~si~AH~snCicI-~f~p~GryfA~GsADA---lvS 214 (313)
T KOG1407|consen 152 --EI-------SWNNSNDLFFLTNGLGCVEILSYP----SLKPVQSIKAHPSNCICI-EFDPDGRYFATGSADA---LVS 214 (313)
T ss_pred --ee-------eecCCCCEEEEecCCceEEEEecc----ccccccccccCCcceEEE-EECCCCceEeeccccc---eee
Confidence 00 122 23477777666766666655 233333 333222223 4899999887655432 245
Q ss_pred EEEEEeCCCCCCCCCCCeeeCCCC-ceEEEEECCCCCEEEEeecCCCCCCEEEEEEcCCCceeEecc
Q 008873 216 LYCAKLYPDWNHTLEAPVKLTNGK-GKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLY 281 (550)
Q Consensus 216 l~~v~~~~~g~~~~~~~~~lt~~~-~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~~~~~l~ 281 (550)
||-++- +.=.+.++.-+ ..-..+||-||++|+-.. ..--|-+.++++|.++..+.
T Consensus 215 LWD~~E-------LiC~R~isRldwpVRTlSFS~dg~~lASaS----EDh~IDIA~vetGd~~~eI~ 270 (313)
T KOG1407|consen 215 LWDVDE-------LICERCISRLDWPVRTLSFSHDGRMLASAS----EDHFIDIAEVETGDRVWEIP 270 (313)
T ss_pred ccChhH-------hhhheeeccccCceEEEEeccCcceeeccC----ccceEEeEecccCCeEEEee
Confidence 553321 00123344322 356678999999875322 11244555667887655443
No 201
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=97.97 E-value=0.005 Score=57.85 Aligned_cols=180 Identities=16% Similarity=0.206 Sum_probs=94.6
Q ss_pred EEEEEECCCCce-EEEEcccCCCCCCCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCceee
Q 008873 60 RLGVVSAAGGPV-SWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVN 138 (550)
Q Consensus 60 ~l~~~d~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~ 138 (550)
.|.++|+.+++. ..+. .....+..+.|+|++++++..... ..|...++.+++.......... .+.
T Consensus 74 ~i~i~~~~~~~~~~~~~---------~~~~~i~~~~~~~~~~~~~~~~~~----~~i~~~~~~~~~~~~~~~~~~~-~i~ 139 (289)
T cd00200 74 TIRLWDLETGECVRTLT---------GHTSYVSSVAFSPDGRILSSSSRD----KTIKVWDVETGKCLTTLRGHTD-WVN 139 (289)
T ss_pred eEEEEEcCcccceEEEe---------ccCCcEEEEEEcCCCCEEEEecCC----CeEEEEECCCcEEEEEeccCCC-cEE
Confidence 578888887543 2331 223467789999998766655412 2477788876665433321111 110
Q ss_pred ccCccccCCCCCccCC-CcEEEEEccCCccEEEEEeCCCcee-ecccccCeEEEEEEeEeecCCEEEEEEcCCCCceeEE
Q 008873 139 LHDCFTPLDKGVTKYS-GGFIWASEKTGFRHLYLHDINGTCL-GPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHL 216 (550)
Q Consensus 139 ~~~~~~~~~~~~~~~~-~~~~~~s~~~g~~~l~~~~~~~~~~-~~lT~~~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l 216 (550)
.+ .+++ +.+++....+| .|++++...++. ..+......+... .|+++++.+++.+. ++ .+
T Consensus 140 ---~~-------~~~~~~~~l~~~~~~~--~i~i~d~~~~~~~~~~~~~~~~i~~~-~~~~~~~~l~~~~~-~~----~i 201 (289)
T cd00200 140 ---SV-------AFSPDGTFVASSSQDG--TIKLWDLRTGKCVATLTGHTGEVNSV-AFSPDGEKLLSSSS-DG----TI 201 (289)
T ss_pred ---EE-------EEcCcCCEEEEEcCCC--cEEEEEccccccceeEecCccccceE-EECCCcCEEEEecC-CC----cE
Confidence 01 1233 23555554344 466777654432 3333323234444 48999988887766 22 34
Q ss_pred EEEEeCCCCCCCCCCCeeeCC-CCceEEEEECCCCCEEEEeecCCCCCCEEEEEEcCCCceeEec
Q 008873 217 YCAKLYPDWNHTLEAPVKLTN-GKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPL 280 (550)
Q Consensus 217 ~~v~~~~~g~~~~~~~~~lt~-~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~~~~~l 280 (550)
...++. .+. ....+.. ......+.+++++..+ +..+ ....++++++.+++....+
T Consensus 202 ~i~d~~-~~~----~~~~~~~~~~~i~~~~~~~~~~~~-~~~~---~~~~i~i~~~~~~~~~~~~ 257 (289)
T cd00200 202 KLWDLS-TGK----CLGTLRGHENGVNSVAFSPDGYLL-ASGS---EDGTIRVWDLRTGECVQTL 257 (289)
T ss_pred EEEECC-CCc----eecchhhcCCceEEEEEcCCCcEE-EEEc---CCCcEEEEEcCCceeEEEc
Confidence 444552 121 1222312 2245667889986544 4433 2247888887666544443
No 202
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=97.95 E-value=0.0089 Score=53.67 Aligned_cols=182 Identities=14% Similarity=0.071 Sum_probs=99.3
Q ss_pred EEEEEEECCCCceEEEEcccCCCCCCCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCceee
Q 008873 59 VRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVN 138 (550)
Q Consensus 59 ~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~ 138 (550)
..|.+||+.+|+.++.-. .-...+.++++|||.++|+.-+ |+. .|-+.+..++....+.+..+..|+.
T Consensus 85 ~~lrlWDl~~g~~t~~f~--------GH~~dVlsva~s~dn~qivSGS-rDk---Tiklwnt~g~ck~t~~~~~~~~WVs 152 (315)
T KOG0279|consen 85 GTLRLWDLATGESTRRFV--------GHTKDVLSVAFSTDNRQIVSGS-RDK---TIKLWNTLGVCKYTIHEDSHREWVS 152 (315)
T ss_pred ceEEEEEecCCcEEEEEE--------ecCCceEEEEecCCCceeecCC-Ccc---eeeeeeecccEEEEEecCCCcCcEE
Confidence 357889999987765422 2234577899999999887654 332 2666677776666666554456875
Q ss_pred ccCccccCCCCCccCCCcEEEEEccCCccEEEEEeCCCceeeccccc-CeEEEEEEeEeecCCEEEEEEcCCCCceeEEE
Q 008873 139 LHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTCLGPITEG-DWMVEQIVGVNEASGQVYFTGTLDGPLESHLY 217 (550)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~~~~~~~lT~~-~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~ 217 (550)
.. .|+|. .+..+++|-. .-..+-+.|+++-+.+.-=.| ...+.. ..+||||.... .+.++ -.++
T Consensus 153 cv-rfsP~-------~~~p~Ivs~s-~DktvKvWnl~~~~l~~~~~gh~~~v~t-~~vSpDGslca-sGgkd----g~~~ 217 (315)
T KOG0279|consen 153 CV-RFSPN-------ESNPIIVSAS-WDKTVKVWNLRNCQLRTTFIGHSGYVNT-VTVSPDGSLCA-SGGKD----GEAM 217 (315)
T ss_pred EE-EEcCC-------CCCcEEEEcc-CCceEEEEccCCcchhhccccccccEEE-EEECCCCCEEe-cCCCC----ceEE
Confidence 42 23332 1233334321 112445566666443321112 222333 35999996444 33333 3566
Q ss_pred EEEeCCCCCCCCCCCeeeCCCCceEEEEECCCCCEEEEeecCCCCCCEEEEEEcCCCcee
Q 008873 218 CAKLYPDWNHTLEAPVKLTNGKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLV 277 (550)
Q Consensus 218 ~v~~~~~g~~~~~~~~~lt~~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~~~ 277 (550)
..++. .++ ...-+....-.+++.|||+.-.|+.... +.+-+.+++++..+
T Consensus 218 LwdL~-~~k----~lysl~a~~~v~sl~fspnrywL~~at~-----~sIkIwdl~~~~~v 267 (315)
T KOG0279|consen 218 LWDLN-EGK----NLYSLEAFDIVNSLCFSPNRYWLCAATA-----TSIKIWDLESKAVV 267 (315)
T ss_pred EEEcc-CCc----eeEeccCCCeEeeEEecCCceeEeeccC-----CceEEEeccchhhh
Confidence 66772 222 2222222333677899998644433221 24777777666543
No 203
>PF07519 Tannase: Tannase and feruloyl esterase; InterPro: IPR011118 This family includes fungal tannase [] and feruloyl esterase [, ]. It also includes several bacterial homologues of unknown function.
Probab=97.95 E-value=0.00069 Score=68.66 Aligned_cols=130 Identities=16% Similarity=0.156 Sum_probs=85.3
Q ss_pred cEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCc----hhh--HH
Q 008873 309 TVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRG----LKF--EA 382 (550)
Q Consensus 309 ~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~----~~~--~~ 382 (550)
..|...+++|..-. ++ ++.-||++...... +..... ....-.++||+++.-|- |+.+.. ..| ..
T Consensus 15 ~~i~fev~LP~~WN---gR----~~~~GgGG~~G~i~-~~~~~~-~~~~~~~~G~A~~~TD~-Gh~~~~~~~~~~~~~n~ 84 (474)
T PF07519_consen 15 PNIRFEVWLPDNWN---GR----FLQVGGGGFAGGIN-YADGKA-SMATALARGYATASTDS-GHQGSAGSDDASFGNNP 84 (474)
T ss_pred ceEEEEEECChhhc---cC----eEEECCCeeeCccc-cccccc-ccchhhhcCeEEEEecC-CCCCCcccccccccCCH
Confidence 37888899998431 32 22334433322111 100000 02344589999999995 443331 112 12
Q ss_pred HHhhccCCCchHHHHHHHHHHHHc-CCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCC
Q 008873 383 SIKHNCGRIDAEDQLTGAEWLIKQ-GLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTS 448 (550)
Q Consensus 383 ~~~~~~~~~~~~D~~~~~~~l~~~-~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~ 448 (550)
....+++...+.+...+.+.|++. ....+++-...|.|-||--+++.|.++|+-|.++++.+|..+
T Consensus 85 ~~~~dfa~ra~h~~~~~aK~l~~~~Yg~~p~~sY~~GcS~GGRqgl~~AQryP~dfDGIlAgaPA~~ 151 (474)
T PF07519_consen 85 EALLDFAYRALHETTVVAKALIEAFYGKAPKYSYFSGCSTGGRQGLMAAQRYPEDFDGILAGAPAIN 151 (474)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHhCCCCCceEEEEeCCCcchHHHHHHhChhhcCeEEeCCchHH
Confidence 234566777788888888888876 335678899999999999999999999999999999999743
No 204
>PF03096 Ndr: Ndr family; InterPro: IPR004142 This family consists of proteins from different gene families: Ndr1/RTP/Drg1, Ndr2, and Ndr3. Their similarity was previously noted []. The precise molecular and cellular function of members of this family is still unknown, yet they are known to be involved in cellular differentiation events. The Ndr1 group was the first to be discovered. Their expression is repressed by the proto-oncogenes N-myc and c-myc, and in line with this observation, Ndr1 protein expression is down-regulated in neoplastic cells, and is reactivated when differentiation is induced by chemicals such as retinoic acid. Ndr2 and Ndr3 expression is not under the control of N-myc or c-myc. Ndr1 expression is also activated by several chemicals: tunicamycin and homocysteine induce Ndr1 in human umbilical endothelial cells; nickel induces Ndr1 in several cell types. Members of this family are found in wide variety of multicellular eukaryotes, including an Ndr1 type protein in Helianthus annuus (Common sunflower), known as Sf21. Interestingly, the highest scoring matches in the noise are all alpha/beta hydrolases (IPR000073 from INTERPRO), suggesting that this family may have an enzymatic function.; PDB: 2QMQ_A 2XMR_B 2XMQ_B 2XMS_A.
Probab=97.92 E-value=0.0003 Score=64.62 Aligned_cols=226 Identities=10% Similarity=0.082 Sum_probs=116.8
Q ss_pred EEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCC-CceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCchhh
Q 008873 302 QIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGP-CVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKF 380 (550)
Q Consensus 302 ~~~~~~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~-~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~~~ 380 (550)
.+++.-| .++..++-... +++|+||-.|.-+ .... -|..-++........+.+.|+-+|.+|...-...+
T Consensus 3 ~v~t~~G-~v~V~v~G~~~-----~~kp~ilT~HDvGlNh~s---cF~~ff~~~~m~~i~~~f~i~Hi~aPGqe~ga~~~ 73 (283)
T PF03096_consen 3 DVETPYG-SVHVTVQGDPK-----GNKPAILTYHDVGLNHKS---CFQGFFNFEDMQEILQNFCIYHIDAPGQEEGAATL 73 (283)
T ss_dssp EEEETTE-EEEEEEESS-------TTS-EEEEE--TT--HHH---HCHHHHCSHHHHHHHTTSEEEEEE-TTTSTT----
T ss_pred eeccCce-EEEEEEEecCC-----CCCceEEEeccccccchH---HHHHHhcchhHHHHhhceEEEEEeCCCCCCCcccc
Confidence 4555555 47777775433 3679999999832 2221 12111222222333567999999999986433222
Q ss_pred HHHHhhccCCCchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCcccccchhh---
Q 008873 381 EASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTFYT--- 457 (550)
Q Consensus 381 ~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~--- 457 (550)
. ..+-.-.++++.+.+..+.++-.+ +.+.-+|--+|+++-+..|..+|+++.++|++.|...-..+..+..
T Consensus 74 p----~~y~yPsmd~LAe~l~~Vl~~f~l--k~vIg~GvGAGAnIL~rfAl~~p~~V~GLiLvn~~~~~~gw~Ew~~~K~ 147 (283)
T PF03096_consen 74 P----EGYQYPSMDQLAEMLPEVLDHFGL--KSVIGFGVGAGANILARFALKHPERVLGLILVNPTCTAAGWMEWFYQKL 147 (283)
T ss_dssp -----TT-----HHHHHCTHHHHHHHHT-----EEEEEETHHHHHHHHHHHHSGGGEEEEEEES---S---HHHHHHHHH
T ss_pred c----ccccccCHHHHHHHHHHHHHhCCc--cEEEEEeeccchhhhhhccccCccceeEEEEEecCCCCccHHHHHHHHH
Confidence 2 222222355555555555554322 4688899999999999999999999999999988654222111110
Q ss_pred -------------------hhccCCCC--CCc---cccc-----cCC----------------hhhhhhcCCCcEEEEec
Q 008873 458 -------------------EKYMGLPS--EDP---VGYE-----YSS----------------VMHHVHKMKGKLLLVHG 492 (550)
Q Consensus 458 -------------------~~~~g~~~--~~~---~~~~-----~~~----------------~~~~~~~i~~P~lii~G 492 (550)
.+++|... .+. +.|+ ..+ .........+|+|++.|
T Consensus 148 ~~~~L~~~gmt~~~~d~Ll~h~Fg~~~~~~n~Dlv~~yr~~l~~~~Np~Nl~~f~~sy~~R~DL~~~~~~~~c~vLlvvG 227 (283)
T PF03096_consen 148 SSWLLYSYGMTSSVKDYLLWHYFGKEEEENNSDLVQTYRQHLDERINPKNLALFLNSYNSRTDLSIERPSLGCPVLLVVG 227 (283)
T ss_dssp H-------CTTS-HHHHHHHHHS-HHHHHCT-HHHHHHHHHHHT-TTHHHHHHHHHHHHT-----SECTTCCS-EEEEEE
T ss_pred hcccccccccccchHHhhhhcccccccccccHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccchhhcCCCCCCeEEEEe
Confidence 01111000 010 1110 011 11123345689999999
Q ss_pred CCCCCCChHHHHHHHHHHHHcCCCeEEEEcCCCCCcCCCCCcHHHHHHHHHHHHH
Q 008873 493 MIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIE 547 (550)
Q Consensus 493 ~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p~~~H~~~~~~~~~~~~~~~~~fl~ 547 (550)
..-+ ....+.++..+|. ....+++..+++|=.. ..+....+.+.+.=||+
T Consensus 228 ~~Sp--~~~~vv~~ns~Ld--p~~ttllkv~dcGglV-~eEqP~klaea~~lFlQ 277 (283)
T PF03096_consen 228 DNSP--HVDDVVEMNSKLD--PTKTTLLKVADCGGLV-LEEQPGKLAEAFKLFLQ 277 (283)
T ss_dssp TTST--THHHHHHHHHHS---CCCEEEEEETT-TT-H-HHH-HHHHHHHHHHHHH
T ss_pred cCCc--chhhHHHHHhhcC--cccceEEEecccCCcc-cccCcHHHHHHHHHHHc
Confidence 9876 4567788888884 3478999999987655 23455556666666654
No 205
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=97.91 E-value=0.0029 Score=57.68 Aligned_cols=108 Identities=11% Similarity=0.035 Sum_probs=61.0
Q ss_pred EEEEeEeecCCEEEEEEcCCCCceeEEEEEE-eCCCCCCCCCCCee------eCCCCceEEEEECCCCCEEEEeecCCCC
Q 008873 190 EQIVGVNEASGQVYFTGTLDGPLESHLYCAK-LYPDWNHTLEAPVK------LTNGKGKHVAVLDHNMRNFVDFHDSLDS 262 (550)
Q Consensus 190 ~~~~~~s~dg~~l~f~~~~~~~~~~~l~~v~-~~~~g~~~~~~~~~------lt~~~~~~~~~~s~dg~~l~~~~s~~~~ 262 (550)
..+. ++-.|+.|++...++- ...|.+. +...|... +++. +.....+..+-||.||.+++... .+
T Consensus 200 K~I~-~s~~g~~liiNtsDRv---IR~ye~~di~~~~r~~--e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s---~~ 270 (405)
T KOG1273|consen 200 KQII-VSRKGRFLIINTSDRV---IRTYEISDIDDEGRDG--EVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGS---AR 270 (405)
T ss_pred eEEE-EeccCcEEEEecCCce---EEEEehhhhcccCccC--CcChhHHHHHHHhhhhhhheeecCCccEEEecc---cc
Confidence 3443 7778888877766432 3444333 21122211 2221 11222356678999998875543 45
Q ss_pred CCEEEEEEcCCCceeEeccCCCCChhhhhcCCCCCCeEEEEEcCCC
Q 008873 263 PPRILLCSLQDGSLVLPLYEQPLTVPRIKRLQLEPPDIVQIQANDG 308 (550)
Q Consensus 263 p~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g 308 (550)
.-.||+.....|..++.|..+. .+.+....+..+..+......|
T Consensus 271 aHaLYIWE~~~GsLVKILhG~k--gE~l~DV~whp~rp~i~si~sg 314 (405)
T KOG1273|consen 271 AHALYIWEKSIGSLVKILHGTK--GEELLDVNWHPVRPIIASIASG 314 (405)
T ss_pred ceeEEEEecCCcceeeeecCCc--hhheeecccccceeeeeeccCC
Confidence 5689999988899888776542 2455556665555554444334
No 206
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=97.90 E-value=0.0027 Score=60.91 Aligned_cols=174 Identities=13% Similarity=0.101 Sum_probs=102.8
Q ss_pred ceEEEcCCCCeEEEEEEeCCCCCeEEEeecCCCCCCCCCcccccCCCCCCCCCeEEEEEEECCCCceEEEEcccCCCCCC
Q 008873 5 TGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQN 84 (550)
Q Consensus 5 ~~~~wSPdg~~lay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~ 84 (550)
.++.|+-||..||+-..+. .+.+|+..++.+..+ .
T Consensus 239 T~L~Wn~~G~~LatG~~~G------------------------------------~~riw~~~G~l~~tl---------~ 273 (524)
T KOG0273|consen 239 TSLDWNNDGTLLATGSEDG------------------------------------EARIWNKDGNLISTL---------G 273 (524)
T ss_pred ceEEecCCCCeEEEeecCc------------------------------------EEEEEecCchhhhhh---------h
Confidence 6789999999999976541 356778887765544 2
Q ss_pred CCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCceeeccCccccCCCCCccCC-CcEEEEEcc
Q 008873 85 YDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYS-GGFIWASEK 163 (550)
Q Consensus 85 ~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~ 163 (550)
.-.+.+.++.|+.+|.+|+...-.. .+.+.|..+|+..+.++..+..-.+. .|-. +.|. .+..
T Consensus 274 ~HkgPI~slKWnk~G~yilS~~vD~----ttilwd~~~g~~~q~f~~~s~~~lDV-----------dW~~~~~F~-ts~t 337 (524)
T KOG0273|consen 274 QHKGPIFSLKWNKKGTYILSGGVDG----TTILWDAHTGTVKQQFEFHSAPALDV-----------DWQSNDEFA-TSST 337 (524)
T ss_pred ccCCceEEEEEcCCCCEEEeccCCc----cEEEEeccCceEEEeeeeccCCccce-----------EEecCceEe-ecCC
Confidence 3355788999999999886653222 26778899999988876543211110 1222 2233 3444
Q ss_pred CCccEEEEEeCCCceeecccccCeEEEEEEeEeecCCEEEEEEcCCCCceeEEEEEEeCCCCCCCCCCCeeeCC-CCceE
Q 008873 164 TGFRHLYLHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTN-GKGKH 242 (550)
Q Consensus 164 ~g~~~l~~~~~~~~~~~~lT~~~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~~v~~~~~g~~~~~~~~~lt~-~~~~~ 242 (550)
+|--++|.++-++-. ..++.+.-.+... -|.|.|. |+.++..++. ..||.+.- ++. ...|.. ...+.
T Consensus 338 d~~i~V~kv~~~~P~-~t~~GH~g~V~al-k~n~tg~-LLaS~SdD~T--lkiWs~~~--~~~-----~~~l~~Hskei~ 405 (524)
T KOG0273|consen 338 DGCIHVCKVGEDRPV-KTFIGHHGEVNAL-KWNPTGS-LLASCSDDGT--LKIWSMGQ--SNS-----VHDLQAHSKEIY 405 (524)
T ss_pred CceEEEEEecCCCcc-eeeecccCceEEE-EECCCCc-eEEEecCCCe--eEeeecCC--Ccc-----hhhhhhhcccee
Confidence 566677777654432 2333344455555 4888885 4455555543 77886543 111 112221 12356
Q ss_pred EEEECCCCC
Q 008873 243 VAVLDHNMR 251 (550)
Q Consensus 243 ~~~~s~dg~ 251 (550)
++.|||+|.
T Consensus 406 t~~wsp~g~ 414 (524)
T KOG0273|consen 406 TIKWSPTGP 414 (524)
T ss_pred eEeecCCCC
Confidence 667888663
No 207
>PTZ00472 serine carboxypeptidase (CBP1); Provisional
Probab=97.90 E-value=7.8e-05 Score=75.41 Aligned_cols=145 Identities=14% Similarity=0.080 Sum_probs=84.9
Q ss_pred eEEEEEc-CCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccc---cccc--------hhHhHHHHhCCcEEE
Q 008873 299 DIVQIQA-NDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSW---INTV--------DMRAQYLRSKGILVW 366 (550)
Q Consensus 299 ~~~~~~~-~~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~---~~~~--------~~~~~~l~~~G~~vv 366 (550)
..+.+.. ..+..+.+|++..... ++..|+|++++|||+.......| ++.. ......+.+ -..++
T Consensus 50 Gy~~v~~~~~~~~lFyw~~~s~~~---~~~~Pl~lwlnGGPG~ss~~G~f~E~GP~~i~~~~~~~~~n~~sW~~-~~~~l 125 (462)
T PTZ00472 50 GYFDIPGNQTDKHYFYWAFGPRNG---NPEAPVLLWMTGGPGCSSMFALLAENGPCLMNETTGDIYNNTYSWNN-EAYVI 125 (462)
T ss_pred EEEEeCCCCCCceEEEEEEEcCCC---CCCCCEEEEECCCCcHHHHHhhhccCCCeEEeCCCCceeECCccccc-ccCeE
Confidence 3445532 2356788898876643 25679999999999976532111 1100 000011222 25678
Q ss_pred EECC-CCCCCCchhhHHHHhhccCCCchHHHHHHHHHHHHc-CCCCCCceEEEEechhHHHHHHHHhhC----------C
Q 008873 367 KLDN-RGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQ-GLAKVGHIGLYGWSYGGYLSAITLARF----------P 434 (550)
Q Consensus 367 ~~d~-rG~g~~~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~-~~~d~~~i~i~G~S~GG~~a~~~~~~~----------~ 434 (550)
.+|. +|+|.+-...... ...-....+|+..+++...++ +.....++.|+|+||||..+..++.+- .
T Consensus 126 ~iDqP~G~G~S~~~~~~~--~~~~~~~a~d~~~~l~~f~~~~p~~~~~~~~i~GeSygG~y~p~~a~~i~~~n~~~~~~~ 203 (462)
T PTZ00472 126 YVDQPAGVGFSYADKADY--DHNESEVSEDMYNFLQAFFGSHEDLRANDLFVVGESYGGHYAPATAYRINMGNKKGDGLY 203 (462)
T ss_pred EEeCCCCcCcccCCCCCC--CCChHHHHHHHHHHHHHHHHhCccccCCCEEEEeecchhhhHHHHHHHHHhhccccCCce
Confidence 8885 5877653211100 000112356777777765544 545568999999999999887666531 1
Q ss_pred CeeEEEEEcCCcCCc
Q 008873 435 DVFQCAVSGAPVTSW 449 (550)
Q Consensus 435 ~~~~~~v~~~~~~~~ 449 (550)
--+++++++.|.++.
T Consensus 204 inLkGi~IGNg~~dp 218 (462)
T PTZ00472 204 INLAGLAVGNGLTDP 218 (462)
T ss_pred eeeEEEEEeccccCh
Confidence 137899988887653
No 208
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=97.88 E-value=0.0068 Score=61.74 Aligned_cols=176 Identities=7% Similarity=0.032 Sum_probs=96.5
Q ss_pred EEEEECCCCceEEEEcccCCCCCCCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCce-EEEEEeecC-ceee
Q 008873 61 LGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQR-KVILVEELD-SWVN 138 (550)
Q Consensus 61 l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~-~~l~~~~~~-~~~~ 138 (550)
+.+||..+|- .-+|+. +-.-.++.+.|+.+|+.++..+-.+. +-.-|+..... |..+. +.+ .+..
T Consensus 374 VKvWn~~Sgf-C~vTFt-------eHts~Vt~v~f~~~g~~llssSLDGt----VRAwDlkRYrNfRTft~-P~p~Qfsc 440 (893)
T KOG0291|consen 374 VKVWNTQSGF-CFVTFT-------EHTSGVTAVQFTARGNVLLSSSLDGT----VRAWDLKRYRNFRTFTS-PEPIQFSC 440 (893)
T ss_pred EEEEeccCce-EEEEec-------cCCCceEEEEEEecCCEEEEeecCCe----EEeeeecccceeeeecC-CCceeeeE
Confidence 4567777663 223442 33346778899999987766543332 33334444433 22222 211 1111
Q ss_pred ccCccccCCCCCccCCCc-EEEEEccCCccEEEEEeCCCceeec-ccccCeEEEEEEeEeecCCEEEEEEcCCCCceeEE
Q 008873 139 LHDCFTPLDKGVTKYSGG-FIWASEKTGFRHLYLHDINGTCLGP-ITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHL 216 (550)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~-~~~~s~~~g~~~l~~~~~~~~~~~~-lT~~~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l 216 (550)
. +.++-+ ++++...+ ..+||+.+..+|+... |..++..|.... ++|+|..|+-.+-+.. ..+
T Consensus 441 v-----------avD~sGelV~AG~~d-~F~IfvWS~qTGqllDiLsGHEgPVs~l~-f~~~~~~LaS~SWDkT---VRi 504 (893)
T KOG0291|consen 441 V-----------AVDPSGELVCAGAQD-SFEIFVWSVQTGQLLDILSGHEGPVSGLS-FSPDGSLLASGSWDKT---VRI 504 (893)
T ss_pred E-----------EEcCCCCEEEeeccc-eEEEEEEEeecCeeeehhcCCCCcceeeE-EccccCeEEeccccce---EEE
Confidence 1 113323 55554433 3579999988887664 444465666554 8999986664444433 455
Q ss_pred EEEEeCCCCCCCCCCCeeeCCCCceEEEEECCCCCEEEEeecCCCCCCEEEEEEcCCCc
Q 008873 217 YCAKLYPDWNHTLEAPVKLTNGKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGS 275 (550)
Q Consensus 217 ~~v~~~~~g~~~~~~~~~lt~~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~ 275 (550)
|.+=- .+ . +.+.+.-......++|+|||+.++....+ .+|-..|...+.
T Consensus 505 W~if~---s~-~--~vEtl~i~sdvl~vsfrPdG~elaVaTld----gqItf~d~~~~~ 553 (893)
T KOG0291|consen 505 WDIFS---SS-G--TVETLEIRSDVLAVSFRPDGKELAVATLD----GQITFFDIKEAV 553 (893)
T ss_pred EEeec---cC-c--eeeeEeeccceeEEEEcCCCCeEEEEEec----ceEEEEEhhhce
Confidence 53321 11 1 23344333346777999999999776544 367777765544
No 209
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=97.87 E-value=0.0063 Score=59.89 Aligned_cols=128 Identities=10% Similarity=0.034 Sum_probs=61.1
Q ss_pred EEEEEECCCCceE-EEEcccCCCCCCCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEE-EEEeecCcee
Q 008873 60 RLGVVSAAGGPVS-WMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKV-ILVEELDSWV 137 (550)
Q Consensus 60 ~l~~~d~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~-l~~~~~~~~~ 137 (550)
.|.++|+.+++.. ++..+ ..-..++.|+||++++....... .+.++|.++.+... |.........
T Consensus 59 ~vsviD~~~~~~v~~i~~G----------~~~~~i~~s~DG~~~~v~n~~~~---~v~v~D~~tle~v~~I~~~~~~~~~ 125 (369)
T PF02239_consen 59 TVSVIDLATGKVVATIKVG----------GNPRGIAVSPDGKYVYVANYEPG---TVSVIDAETLEPVKTIPTGGMPVDG 125 (369)
T ss_dssp EEEEEETTSSSEEEEEE-S----------SEEEEEEE--TTTEEEEEEEETT---EEEEEETTT--EEEEEE--EE-TTT
T ss_pred eEEEEECCcccEEEEEecC----------CCcceEEEcCCCCEEEEEecCCC---ceeEeccccccceeecccccccccc
Confidence 3678999998764 55442 24456899999998866543332 58899999988643 3222111000
Q ss_pred eccCccccCCCCCccCCCcEEEEEccCCccEEEEEeCCCce---eecccccCeEEEEEEeEeecCCEEEEEEc
Q 008873 138 NLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTC---LGPITEGDWMVEQIVGVNEASGQVYFTGT 207 (550)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~~~~---~~~lT~~~~~~~~~~~~s~dg~~l~f~~~ 207 (550)
..++....-. +...+.|++.... -.+||++|....+ .+.+..+.+-.. . .|+++|++++...+
T Consensus 126 -~~~Rv~aIv~--s~~~~~fVv~lkd--~~~I~vVdy~d~~~~~~~~i~~g~~~~D-~-~~dpdgry~~va~~ 191 (369)
T PF02239_consen 126 -PESRVAAIVA--SPGRPEFVVNLKD--TGEIWVVDYSDPKNLKVTTIKVGRFPHD-G-GFDPDGRYFLVAAN 191 (369)
T ss_dssp -S---EEEEEE---SSSSEEEEEETT--TTEEEEEETTTSSCEEEEEEE--TTEEE-E-EE-TTSSEEEEEEG
T ss_pred -cCCCceeEEe--cCCCCEEEEEEcc--CCeEEEEEeccccccceeeecccccccc-c-ccCcccceeeeccc
Confidence 0000000000 0112224444333 3478999854432 233333443322 2 48999988877544
No 210
>COG4814 Uncharacterized protein with an alpha/beta hydrolase fold [General function prediction only]
Probab=97.84 E-value=0.00015 Score=64.04 Aligned_cols=209 Identities=16% Similarity=0.135 Sum_probs=109.7
Q ss_pred CceEEEEEcCCCCceeecccccccchhHhHHHHhCC-----cEEEEECCCCCC----CCchhhHHHH-------hhccCC
Q 008873 327 PYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKG-----ILVWKLDNRGTA----RRGLKFEASI-------KHNCGR 390 (550)
Q Consensus 327 ~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G-----~~vv~~d~rG~g----~~~~~~~~~~-------~~~~~~ 390 (550)
.+|+| |+||..+... ..+.+...|...+ -.++.+|--|+- .....-...+ ...-+.
T Consensus 45 ~iPTI-fIhGsgG~as-------S~~~Mv~ql~~~~~~~~e~Lt~~V~~dgslk~tGk~~Kd~~nP~I~~gfe~n~~s~~ 116 (288)
T COG4814 45 AIPTI-FIHGSGGTAS-------SLNGMVNQLLPDYKAGTESLTMTVDVDGSLKVTGKISKDAKNPIIEFGFEDNTASGL 116 (288)
T ss_pred ccceE-EEecCCCChh-------HHHHHHHHhhhcccccccceEEEEcCCCcEEEeeeecccCCCCeEEEEEecCcCchh
Confidence 56764 5899666543 2233455555444 456777766642 1111100000 000011
Q ss_pred CchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhCCC-----eeEEEEEcCCcCCcccc--cchhhhhccCC
Q 008873 391 IDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPD-----VFQCAVSGAPVTSWDGY--DTFYTEKYMGL 463 (550)
Q Consensus 391 ~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~-----~~~~~v~~~~~~~~~~~--~~~~~~~~~g~ 463 (550)
.-..-+..++.+|.++..+ .++-++||||||....+.+..+.+ .+...|+.++..+-... +.-..+-....
T Consensus 117 ~~s~wlk~~msyL~~~Y~i--~k~n~VGhSmGg~~~~~Y~~~yg~dks~P~lnK~V~l~gpfN~~~l~~de~v~~v~~~~ 194 (288)
T COG4814 117 DQSKWLKKAMSYLQKHYNI--PKFNAVGHSMGGLGLTYYMIDYGDDKSLPPLNKLVSLAGPFNVGNLVPDETVTDVLKDG 194 (288)
T ss_pred hHHHHHHHHHHHHHHhcCC--ceeeeeeeccccHHHHHHHHHhcCCCCCcchhheEEecccccccccCCCcchheeeccC
Confidence 1134567788889888744 578899999999999888876532 23445555443331000 00000000001
Q ss_pred CCCCccccccCChhhhhhcC--CCcEEEEecCCC------CCCChHHHHHHHHHHHHcCCCeEEEEcCC--CCCcCCCCC
Q 008873 464 PSEDPVGYEYSSVMHHVHKM--KGKLLLVHGMID------ENVHFRHTARLINALVAARKPYEILIFPD--ERHMPRRHR 533 (550)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~~i--~~P~lii~G~~D------~~v~~~~~~~~~~~l~~~~~~~~~~~~p~--~~H~~~~~~ 533 (550)
|......|.++- .....++ ..-+|+|.|+-| ..||...+...+..+...++.+.-.+|++ +.|.-.+ +
T Consensus 195 ~~~~~t~y~~y~-~~n~k~v~~~~evl~IaGDl~dg~~tDG~Vp~assls~~~lf~~~~ksy~e~~~~Gk~a~Hs~lh-e 272 (288)
T COG4814 195 PGLIKTPYYDYI-AKNYKKVSPNTEVLLIAGDLDDGKQTDGAVPWASSLSIYHLFKKNGKSYIESLYKGKDARHSKLH-E 272 (288)
T ss_pred ccccCcHHHHHH-HhcceeCCCCcEEEEEecccccCCcCCCceechHhHHHHHHhccCcceeEEEeeeCCcchhhccC-C
Confidence 100001111000 0111222 246899999764 67888888888887776666665556655 5787533 2
Q ss_pred cHHHHHHHHHHHHHH
Q 008873 534 DRIYMEERIWEFIER 548 (550)
Q Consensus 534 ~~~~~~~~~~~fl~~ 548 (550)
+ ..+...+..||.+
T Consensus 273 n-~~v~~yv~~FLw~ 286 (288)
T COG4814 273 N-PTVAKYVKNFLWE 286 (288)
T ss_pred C-hhHHHHHHHHhhc
Confidence 2 3556778888754
No 211
>PF07819 PGAP1: PGAP1-like protein; InterPro: IPR012908 The sequences found in this family are similar to PGAP1 (Q765A7 from SWISSPROT). This is an endoplasmic reticulum membrane protein with a catalytic serine-containing motif that is conserved in a number of lipases. PGAP1 functions as a GPI inositol-deacylase; this deacylation is important for the efficient transport of GPI-anchored proteins from the endoplasmic reticulum to the Golgi body [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0006505 GPI anchor metabolic process, 0006886 intracellular protein transport, 0031227 intrinsic to endoplasmic reticulum membrane
Probab=97.82 E-value=0.00012 Score=66.46 Aligned_cols=76 Identities=14% Similarity=0.138 Sum_probs=47.3
Q ss_pred CCcEEEEECCCCCC--CCchhhHHHHhhccCCCchHHHHHHHHHHHHcC---CCCCCceEEEEechhHHHHHHHHhhCC-
Q 008873 361 KGILVWKLDNRGTA--RRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQG---LAKVGHIGLYGWSYGGYLSAITLARFP- 434 (550)
Q Consensus 361 ~G~~vv~~d~rG~g--~~~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~---~~d~~~i~i~G~S~GG~~a~~~~~~~~- 434 (550)
..+.++++|+.... ..|.... ...+-+..+++.+.+.. ...+++|.|+||||||.++-.++...+
T Consensus 38 ~~~d~ft~df~~~~s~~~g~~l~---------~q~~~~~~~i~~i~~~~~~~~~~~~~vilVgHSmGGlvar~~l~~~~~ 108 (225)
T PF07819_consen 38 SHFDFFTVDFNEELSAFHGRTLQ---------RQAEFLAEAIKYILELYKSNRPPPRSVILVGHSMGGLVARSALSLPNY 108 (225)
T ss_pred cceeEEEeccCccccccccccHH---------HHHHHHHHHHHHHHHhhhhccCCCCceEEEEEchhhHHHHHHHhcccc
Confidence 35788999987532 1121111 01233445556655432 346789999999999999988876533
Q ss_pred --CeeEEEEEcCC
Q 008873 435 --DVFQCAVSGAP 445 (550)
Q Consensus 435 --~~~~~~v~~~~ 445 (550)
+.++.+|..+.
T Consensus 109 ~~~~v~~iitl~t 121 (225)
T PF07819_consen 109 DPDSVKTIITLGT 121 (225)
T ss_pred ccccEEEEEEEcC
Confidence 46777777653
No 212
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=97.77 E-value=0.0061 Score=53.80 Aligned_cols=177 Identities=5% Similarity=0.024 Sum_probs=97.2
Q ss_pred EEEEEECCCCceEE-EEcccCCCCCCCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCceee
Q 008873 60 RLGVVSAAGGPVSW-MDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVN 138 (550)
Q Consensus 60 ~l~~~d~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~ 138 (550)
++.+||+.+++..+ ++++ .-.+.+..+.|--||+.++...... .-.||.+.. -.++++.....+.-
T Consensus 62 hvRlyD~~S~np~Pv~t~e-------~h~kNVtaVgF~~dgrWMyTgseDg--t~kIWdlR~--~~~qR~~~~~spVn-- 128 (311)
T KOG0315|consen 62 HVRLYDLNSNNPNPVATFE-------GHTKNVTAVGFQCDGRWMYTGSEDG--TVKIWDLRS--LSCQRNYQHNSPVN-- 128 (311)
T ss_pred eeEEEEccCCCCCceeEEe-------ccCCceEEEEEeecCeEEEecCCCc--eEEEEeccC--cccchhccCCCCcc--
Confidence 35567888877643 3332 2235788899999999998765443 335665544 45566555432210
Q ss_pred ccCccccCCCCCccCCC-cEEEEEccCCccEEEEEeCCCc-eeecccccCeE-EEEEEeEeecCCEEEEEEcCCCCceeE
Q 008873 139 LHDCFTPLDKGVTKYSG-GFIWASEKTGFRHLYLHDINGT-CLGPITEGDWM-VEQIVGVNEASGQVYFTGTLDGPLESH 215 (550)
Q Consensus 139 ~~~~~~~~~~~~~~~~~-~~~~~s~~~g~~~l~~~~~~~~-~~~~lT~~~~~-~~~~~~~s~dg~~l~f~~~~~~~~~~~ 215 (550)
. .. ..|+ .=++..+++| +|++.|+... ..++|...+-. +... .+.+||+.+.-.-++. ...
T Consensus 129 ~---vv-------lhpnQteLis~dqsg--~irvWDl~~~~c~~~liPe~~~~i~sl-~v~~dgsml~a~nnkG---~cy 192 (311)
T KOG0315|consen 129 T---VV-------LHPNQTELISGDQSG--NIRVWDLGENSCTHELIPEDDTSIQSL-TVMPDGSMLAAANNKG---NCY 192 (311)
T ss_pred e---EE-------ecCCcceEEeecCCC--cEEEEEccCCccccccCCCCCcceeeE-EEcCCCcEEEEecCCc---cEE
Confidence 0 00 1222 2466777777 4666665443 34566654332 3333 4889998777554443 245
Q ss_pred EEEEEeCCCCCCCCCCCeeeC---CCC-ceEEEEECCCCCEEEEeecCCCCCCEEEEEEcCC
Q 008873 216 LYCAKLYPDWNHTLEAPVKLT---NGK-GKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQD 273 (550)
Q Consensus 216 l~~v~~~~~g~~~~~~~~~lt---~~~-~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~ 273 (550)
+|++-. ... ....+.++ ... ....+-+|||+++|+...++ ..+++.++++
T Consensus 193 vW~l~~--~~~--~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssd----ktv~iwn~~~ 246 (311)
T KOG0315|consen 193 VWRLLN--HQT--ASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSD----KTVKIWNTDD 246 (311)
T ss_pred EEEccC--CCc--cccceEhhheecccceEEEEEECCCCcEEEeecCC----ceEEEEecCC
Confidence 554432 111 11222222 222 25667899999998755443 3556655543
No 213
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=97.76 E-value=0.00083 Score=63.21 Aligned_cols=213 Identities=12% Similarity=0.161 Sum_probs=104.3
Q ss_pred EEEEECCCCceEEEEcccCCCCCCCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCceeecc
Q 008873 61 LGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLH 140 (550)
Q Consensus 61 l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~ 140 (550)
++++|.++|..+.+-- ..-...+.+-+|-|||..++.-+.+ ..++..+.++... ..|-...
T Consensus 293 ~~lwDv~tgd~~~~y~-------~~~~~S~~sc~W~pDg~~~V~Gs~d----r~i~~wdlDgn~~--------~~W~gvr 353 (519)
T KOG0293|consen 293 LSLWDVDTGDLRHLYP-------SGLGFSVSSCAWCPDGFRFVTGSPD----RTIIMWDLDGNIL--------GNWEGVR 353 (519)
T ss_pred eeeccCCcchhhhhcc-------cCcCCCcceeEEccCCceeEecCCC----CcEEEecCCcchh--------hcccccc
Confidence 6889999998764311 1113466778999999987665443 2488999887541 1222110
Q ss_pred -CccccCCCCCccCCCc-EEEEEccCCccEEEEEeCCCceee-cccccCeEEEEEEeEeecCCEEEEEEcCCCCceeEEE
Q 008873 141 -DCFTPLDKGVTKYSGG-FIWASEKTGFRHLYLHDINGTCLG-PITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLY 217 (550)
Q Consensus 141 -~~~~~~~~~~~~~~~~-~~~~s~~~g~~~l~~~~~~~~~~~-~lT~~~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~ 217 (550)
+...-+ +.++|+ .++.... -.+|.+++.++..-+ .++... .+.++. .|.||+.+...-... +.++|
T Consensus 354 ~~~v~dl----ait~Dgk~vl~v~~--d~~i~l~~~e~~~dr~lise~~-~its~~-iS~d~k~~LvnL~~q---ei~LW 422 (519)
T KOG0293|consen 354 DPKVHDL----AITYDGKYVLLVTV--DKKIRLYNREARVDRGLISEEQ-PITSFS-ISKDGKLALVNLQDQ---EIHLW 422 (519)
T ss_pred cceeEEE----EEcCCCcEEEEEec--ccceeeechhhhhhhccccccC-ceeEEE-EcCCCcEEEEEcccC---eeEEe
Confidence 000000 112233 3333221 246777776654444 344332 344443 788887655443332 35666
Q ss_pred EEEeCCCCCCCCCCCeeeCCCC-c---eEEEEECCCCCEEEEeecCCCCCCEEEEEEcCCCceeEeccCCCCChhhhhcC
Q 008873 218 CAKLYPDWNHTLEAPVKLTNGK-G---KHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLYEQPLTVPRIKRL 293 (550)
Q Consensus 218 ~v~~~~~g~~~~~~~~~lt~~~-~---~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~ 293 (550)
++. ... .+++...-. + +.++ |..-...+ +.|+. ....+|+.+..+|+.+.+|+..+. ..+=.
T Consensus 423 --Dl~-e~~----lv~kY~Ghkq~~fiIrSC-Fgg~~~~f--iaSGS-ED~kvyIWhr~sgkll~~LsGHs~---~vNcV 488 (519)
T KOG0293|consen 423 --DLE-ENK----LVRKYFGHKQGHFIIRSC-FGGGNDKF--IASGS-EDSKVYIWHRISGKLLAVLSGHSK---TVNCV 488 (519)
T ss_pred --ecc-hhh----HHHHhhcccccceEEEec-cCCCCcce--EEecC-CCceEEEEEccCCceeEeecCCcc---eeeEE
Confidence 552 111 122222111 1 1222 22222233 33433 335899999988987777765432 23333
Q ss_pred CCCCCeEEEEEcC-CCcEEEEEEEcCC
Q 008873 294 QLEPPDIVQIQAN-DGTVLYGALYKPD 319 (550)
Q Consensus 294 ~~~~~~~~~~~~~-~g~~l~~~~~~P~ 319 (550)
.+.+....+|-+. |..+| .++.|.
T Consensus 489 swNP~~p~m~ASasDDgtI--RIWg~~ 513 (519)
T KOG0293|consen 489 SWNPADPEMFASASDDGTI--RIWGPS 513 (519)
T ss_pred ecCCCCHHHhhccCCCCeE--EEecCC
Confidence 3444444444332 33334 444554
No 214
>COG3150 Predicted esterase [General function prediction only]
Probab=97.75 E-value=0.00053 Score=56.60 Aligned_cols=135 Identities=16% Similarity=0.154 Sum_probs=74.1
Q ss_pred HHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCcccccchhhhhccCCCCC--Ccccc
Q 008873 394 EDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTFYTEKYMGLPSE--DPVGY 471 (550)
Q Consensus 394 ~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~~~~--~~~~~ 471 (550)
+..++-++.++.+.. | ..++|+|.|.|||.+.+++.+.. ++++ ++.|.+-. ......++|.+.. .-+.|
T Consensus 43 ~~a~~ele~~i~~~~-~-~~p~ivGssLGGY~At~l~~~~G--irav-~~NPav~P----~e~l~gylg~~en~ytg~~y 113 (191)
T COG3150 43 QQALKELEKAVQELG-D-ESPLIVGSSLGGYYATWLGFLCG--IRAV-VFNPAVRP----YELLTGYLGRPENPYTGQEY 113 (191)
T ss_pred HHHHHHHHHHHHHcC-C-CCceEEeecchHHHHHHHHHHhC--Chhh-hcCCCcCc----hhhhhhhcCCCCCCCCcceE
Confidence 334444444444421 2 34899999999999999998752 2333 34443211 1111223333321 11223
Q ss_pred ccCC----h--hhhhhcCCCc--EEEEecCCCCCCChHHHHHHHHHHHHcCCCeEEEEcCCCCCcCCCCCcHHHHHHHHH
Q 008873 472 EYSS----V--MHHVHKMKGK--LLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIW 543 (550)
Q Consensus 472 ~~~~----~--~~~~~~i~~P--~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p~~~H~~~~~~~~~~~~~~~~ 543 (550)
.-.+ - ...+..++.| +.++.-+.|++....++.+.+..+ ...+..+++|.|.+ .....++|+
T Consensus 114 ~le~~hI~~l~~~~~~~l~~p~~~~lL~qtgDEvLDyr~a~a~y~~~-------~~~V~dgg~H~F~~---f~~~l~~i~ 183 (191)
T COG3150 114 VLESRHIATLCVLQFRELNRPRCLVLLSQTGDEVLDYRQAVAYYHPC-------YEIVWDGGDHKFKG---FSRHLQRIK 183 (191)
T ss_pred EeehhhHHHHHHhhccccCCCcEEEeecccccHHHHHHHHHHHhhhh-------hheeecCCCccccc---hHHhHHHHH
Confidence 1111 0 1123333333 344455669988888887777654 34567889999854 556678888
Q ss_pred HHHH
Q 008873 544 EFIE 547 (550)
Q Consensus 544 ~fl~ 547 (550)
.|+.
T Consensus 184 aF~g 187 (191)
T COG3150 184 AFKG 187 (191)
T ss_pred HHhc
Confidence 8864
No 215
>PF01674 Lipase_2: Lipase (class 2); InterPro: IPR002918 Lipases or triacylglycerol acylhydrolases hydrolyse ester bonds in triacylglycerol giving diacylglycerol, monoacylglycerol, glycerol and free fatty acids []. This group of lipases has been called class 2 as they are not clearly related to other lipase families, and includes LipA and LipB from Bacillus subtilis [] and uncharacterised proteins from Caenorhabditis.; PDB: 2VTV_B 2X76_A 2X5X_A 2QXU_A 3QMM_A 1I6W_A 3D2C_J 2QXT_B 1R50_A 1T2N_A ....
Probab=97.73 E-value=9.5e-05 Score=66.12 Aligned_cols=90 Identities=14% Similarity=0.138 Sum_probs=48.9
Q ss_pred eEEEEEcCCCCceeecccccccchhHhHHHHhCCcE---EEEECCCCCCCCchhhHHHHhhccCCCchHHHHHHHHHHHH
Q 008873 329 KTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGIL---VWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIK 405 (550)
Q Consensus 329 P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~---vv~~d~rG~g~~~~~~~~~~~~~~~~~~~~D~~~~~~~l~~ 405 (550)
|| |++||...... ..|..+...|.++||. |.+++|-...... ...... ........+.+.|+.+.+
T Consensus 3 PV-VlVHG~~~~~~------~~w~~~~~~l~~~GY~~~~vya~tyg~~~~~~--~~~~~~--~~~~~~~~l~~fI~~Vl~ 71 (219)
T PF01674_consen 3 PV-VLVHGTGGNAY------SNWSTLAPYLKAAGYCDSEVYALTYGSGNGSP--SVQNAH--MSCESAKQLRAFIDAVLA 71 (219)
T ss_dssp -E-EEE--TTTTTC------GGCCHHHHHHHHTT--CCCEEEE--S-CCHHT--HHHHHH--B-HHHHHHHHHHHHHHHH
T ss_pred CE-EEECCCCcchh------hCHHHHHHHHHHcCCCcceeEeccCCCCCCCC--cccccc--cchhhHHHHHHHHHHHHH
Confidence 55 56899654221 2556678999999999 7999995433211 111111 001113556666666665
Q ss_pred cCCCCCCceEEEEechhHHHHHHHHhh
Q 008873 406 QGLAKVGHIGLYGWSYGGYLSAITLAR 432 (550)
Q Consensus 406 ~~~~d~~~i~i~G~S~GG~~a~~~~~~ 432 (550)
.- .. +|=|+||||||.++-+++..
T Consensus 72 ~T--Ga-kVDIVgHS~G~~iaR~yi~~ 95 (219)
T PF01674_consen 72 YT--GA-KVDIVGHSMGGTIARYYIKG 95 (219)
T ss_dssp HH--T---EEEEEETCHHHHHHHHHHH
T ss_pred hh--CC-EEEEEEcCCcCHHHHHHHHH
Confidence 42 34 89999999999999888753
No 216
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=97.73 E-value=0.0081 Score=58.67 Aligned_cols=76 Identities=8% Similarity=0.011 Sum_probs=36.4
Q ss_pred eEeecCCEEEEEEcCCCCceeEEEEEEeCCCCCCCCCCCeeeCCCCceEEEEECCCCCEEEEeecCCCCCCEEEEEEcCC
Q 008873 194 GVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTNGKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQD 273 (550)
Q Consensus 194 ~~s~dg~~l~f~~~~~~~~~~~l~~v~~~~~g~~~~~~~~~lt~~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~ 273 (550)
.++|||+.||.. ++.. ....+|.++. ++.. ......+..+..-..+.++|||++|+...... .--.++.++..+
T Consensus 234 ~~~pdg~~lyv~-~~~~-~~I~v~~i~~--~~~~-~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~-~~v~v~~~~~~~ 307 (330)
T PRK11028 234 HITPDGRHLYAC-DRTA-SLISVFSVSE--DGSV-LSFEGHQPTETQPRGFNIDHSGKYLIAAGQKS-HHISVYEIDGET 307 (330)
T ss_pred EECCCCCEEEEe-cCCC-CeEEEEEEeC--CCCe-EEEeEEEeccccCCceEECCCCCEEEEEEccC-CcEEEEEEcCCC
Confidence 378999888875 4322 1245554443 3310 00011111122233458899999886654322 212344444344
Q ss_pred Cc
Q 008873 274 GS 275 (550)
Q Consensus 274 g~ 275 (550)
|.
T Consensus 308 g~ 309 (330)
T PRK11028 308 GL 309 (330)
T ss_pred Cc
Confidence 44
No 217
>PF05705 DUF829: Eukaryotic protein of unknown function (DUF829); InterPro: IPR008547 This signature identifies Transmembrane protein 53, that have no known function but are predicted to be integral membrane proteins.
Probab=97.72 E-value=0.0019 Score=59.72 Aligned_cols=64 Identities=13% Similarity=0.049 Sum_probs=58.0
Q ss_pred CCCcEEEEecCCCCCCChHHHHHHHHHHHHcCCCeEEEEcCCCCCcCCCCCcHHHHHHHHHHHH
Q 008873 483 MKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFI 546 (550)
Q Consensus 483 i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p~~~H~~~~~~~~~~~~~~~~~fl 546 (550)
..+|-|.+.+..|..++....+++.+..++.|.+++...|.+..|.-....+.+.+++.+.+|+
T Consensus 177 ~~~p~lylYS~~D~l~~~~~ve~~~~~~~~~G~~V~~~~f~~S~HV~H~r~~p~~Y~~~v~~fw 240 (240)
T PF05705_consen 177 SRCPRLYLYSKADPLIPWRDVEEHAEEARRKGWDVRAEKFEDSPHVAHLRKHPDRYWRAVDEFW 240 (240)
T ss_pred CCCCeEEecCCCCcCcCHHHHHHHHHHHHHcCCeEEEecCCCCchhhhcccCHHHHHHHHHhhC
Confidence 4579999999999999999999999999999999999999999998777788888888888774
No 218
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=97.71 E-value=0.0013 Score=61.06 Aligned_cols=153 Identities=12% Similarity=0.130 Sum_probs=89.1
Q ss_pred CCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCceeeccCccccCCCCCccCCCc-EEEEEccC
Q 008873 86 DEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYSGG-FIWASEKT 164 (550)
Q Consensus 86 ~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~ 164 (550)
+..++.+.+|.+||..++..+-.. ..|.+-++++|...+|......+.. -+ -|+||+ ++|.+.-+
T Consensus 194 gh~pVtsmqwn~dgt~l~tAS~gs---ssi~iWdpdtg~~~pL~~~glgg~s-------lL----kwSPdgd~lfaAt~d 259 (445)
T KOG2139|consen 194 GHNPVTSMQWNEDGTILVTASFGS---SSIMIWDPDTGQKIPLIPKGLGGFS-------LL----KWSPDGDVLFAATCD 259 (445)
T ss_pred CCceeeEEEEcCCCCEEeecccCc---ceEEEEcCCCCCcccccccCCCcee-------eE----EEcCCCCEEEEeccc
Confidence 346789999999999887765333 2366668888887777632222211 11 356665 66665545
Q ss_pred CccEEEEEeCCCceeecccccCeEEEEEEeEeecCCEEEEEEcCCCCceeEEEEEEeCCCCCCC----CC----------
Q 008873 165 GFRHLYLHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHT----LE---------- 230 (550)
Q Consensus 165 g~~~l~~~~~~~~~~~~lT~~~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~~v~~~~~g~~~----~~---------- 230 (550)
+-..||..+..-.+.+.++... .+.. ..|||+|+.|+|+.... ..||++.. ++... ..
T Consensus 260 avfrlw~e~q~wt~erw~lgsg-rvqt-acWspcGsfLLf~~sgs----p~lysl~f--~~~~~~~~~~~~~k~~lliaD 331 (445)
T KOG2139|consen 260 AVFRLWQENQSWTKERWILGSG-RVQT-ACWSPCGSFLLFACSGS----PRLYSLTF--DGEDSVFLRPQSIKRVLLIAD 331 (445)
T ss_pred ceeeeehhcccceecceeccCC-ceee-eeecCCCCEEEEEEcCC----ceEEEEee--cCCCccccCcccceeeeeecc
Confidence 5556774332222334444322 3333 35999999999998754 46777766 22200 00
Q ss_pred --CCeeeCC----CCceEEEEECCCCCEEEEeecCC
Q 008873 231 --APVKLTN----GKGKHVAVLDHNMRNFVDFHDSL 260 (550)
Q Consensus 231 --~~~~lt~----~~~~~~~~~s~dg~~l~~~~s~~ 260 (550)
+....+. .++.+..+|.|.|.+++.++-..
T Consensus 332 L~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~ 367 (445)
T KOG2139|consen 332 LQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQ 367 (445)
T ss_pred chhhhhhcCcccccCccceeeECCCCCEEEEEEcCC
Confidence 0000111 12356678999999998887553
No 219
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.68 E-value=0.021 Score=58.25 Aligned_cols=166 Identities=10% Similarity=0.113 Sum_probs=85.7
Q ss_pred CCCceeEEEEECCCCeEEEEEEecCCCceEEEEEEC-CCCceEEEEEeecCceeeccCccccCCCCCccCCCc-EEEEEc
Q 008873 85 YDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDI-KTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYSGG-FIWASE 162 (550)
Q Consensus 85 ~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~-~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~ 162 (550)
.....+..++|||||++++...... .|.+.++ +.+...+... ....++.. . .+.+++ +++...
T Consensus 201 ~h~~~v~~~~fs~d~~~l~s~s~D~----tiriwd~~~~~~~~~~l~-gH~~~v~~---~-------~f~p~g~~i~Sgs 265 (456)
T KOG0266|consen 201 GHTRGVSDVAFSPDGSYLLSGSDDK----TLRIWDLKDDGRNLKTLK-GHSTYVTS---V-------AFSPDGNLLVSGS 265 (456)
T ss_pred ccccceeeeEECCCCcEEEEecCCc----eEEEeeccCCCeEEEEec-CCCCceEE---E-------EecCCCCEEEEec
Confidence 3355788899999999777665443 2555555 4444433222 11122211 1 123333 554443
Q ss_pred cCCccEEEEEeCCCce-eecccccCeEEEEEEeEeecCCEEEEEEcCCCCceeEEEEEEeCCCCCCCCCCCeeeCCCCc-
Q 008873 163 KTGFRHLYLHDINGTC-LGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTNGKG- 240 (550)
Q Consensus 163 ~~g~~~l~~~~~~~~~-~~~lT~~~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~~v~~~~~g~~~~~~~~~lt~~~~- 240 (550)
.++ .+.+.+..+++ .+.|....-.+... .+++||..|+-. ..++ ...+| ++. .+... -.+.+.....
T Consensus 266 ~D~--tvriWd~~~~~~~~~l~~hs~~is~~-~f~~d~~~l~s~-s~d~--~i~vw--d~~-~~~~~--~~~~~~~~~~~ 334 (456)
T KOG0266|consen 266 DDG--TVRIWDVRTGECVRKLKGHSDGISGL-AFSPDGNLLVSA-SYDG--TIRVW--DLE-TGSKL--CLKLLSGAENS 334 (456)
T ss_pred CCC--cEEEEeccCCeEEEeeeccCCceEEE-EECCCCCEEEEc-CCCc--cEEEE--ECC-CCcee--eeecccCCCCC
Confidence 344 34555555544 44555444344544 488998777655 3332 24555 551 12100 0112222222
Q ss_pred --eEEEEECCCCCEEEEeecCCCCCCEEEEEEcCCCceeEec
Q 008873 241 --KHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPL 280 (550)
Q Consensus 241 --~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~~~~~l 280 (550)
...+.|+|++++++....+ ..+.+.++..+...+..
T Consensus 335 ~~~~~~~fsp~~~~ll~~~~d----~~~~~w~l~~~~~~~~~ 372 (456)
T KOG0266|consen 335 APVTSVQFSPNGKYLLSASLD----RTLKLWDLRSGKSVGTY 372 (456)
T ss_pred CceeEEEECCCCcEEEEecCC----CeEEEEEccCCcceeee
Confidence 3556899999988766544 36666777666544433
No 220
>PF00151 Lipase: Lipase; InterPro: IPR013818 Triglyceride lipases (3.1.1.3 from EC) are lipolytic enzymes that hydrolyse ester linkages of triglycerides []. Lipases are widely distributed in animals, plants and prokaryotes. At least three tissue-specific isozymes exist in higher vertebrates, pancreatic, hepatic and gastric/lingual. These lipases are closely related to each other and to lipoprotein lipase (3.1.1.34 from EC), which hydrolyses triglycerides of chylomicrons and very low density lipoproteins (VLDL) []. The most conserved region in all these proteins is centred around a serine residue which has been shown [] to participate, with an histidine and an aspartic acid residue, in a charge relay system. Such a region is also present in lipases of prokaryotic origin and in lecithin-cholesterol acyltransferase (2.3.1.43 from EC) (LCAT) [], which catalyzes fatty acid transfer between phosphatidylcholine and cholesterol.; PDB: 1LPB_B 1LPA_B 1N8S_A 1GPL_A 1W52_X 2PVS_B 2OXE_B 1BU8_A 2PPL_A 1ETH_A ....
Probab=97.66 E-value=7.9e-05 Score=71.61 Aligned_cols=114 Identities=17% Similarity=0.145 Sum_probs=62.4
Q ss_pred CCceEEEEEcCCCCceeecccccccchhHhH-HHHh--CCcEEEEECCCCCCCCchhhHHHHhhccCCCchHHHHHHHHH
Q 008873 326 PPYKTLISVYGGPCVQLVCDSWINTVDMRAQ-YLRS--KGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEW 402 (550)
Q Consensus 326 ~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~-~l~~--~G~~vv~~d~rG~g~~~~~~~~~~~~~~~~~~~~D~~~~~~~ 402 (550)
.+.|++|++||-..... ...|.. .+.+ ++.. .+++|+++|+...-. ..+..+..... ..-..+...+..
T Consensus 69 ~~~pt~iiiHGw~~~~~-~~~~~~---~~~~all~~~~~d~NVI~VDWs~~a~--~~Y~~a~~n~~--~vg~~la~~l~~ 140 (331)
T PF00151_consen 69 PSKPTVIIIHGWTGSGS-SESWIQ---DMIKALLQKDTGDYNVIVVDWSRGAS--NNYPQAVANTR--LVGRQLAKFLSF 140 (331)
T ss_dssp TTSEEEEEE--TT-TT--TTTHHH---HHHHHHHCC--S-EEEEEEE-HHHHS--S-HHHHHHHHH--HHHHHHHHHHHH
T ss_pred CCCCeEEEEcCcCCccc-chhHHH---HHHHHHHhhccCCceEEEEcchhhcc--ccccchhhhHH--HHHHHHHHHHHH
Confidence 46799999999544331 122321 1233 3444 589999999974211 12222221100 012334455667
Q ss_pred HHHcCCCCCCceEEEEechhHHHHHHHHhhCCC--eeEEEEEcCCcC
Q 008873 403 LIKQGLAKVGHIGLYGWSYGGYLSAITLARFPD--VFQCAVSGAPVT 447 (550)
Q Consensus 403 l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~--~~~~~v~~~~~~ 447 (550)
|.....++.++|.|+|||+||++|..++-.... ++..+....|..
T Consensus 141 L~~~~g~~~~~ihlIGhSLGAHvaG~aG~~~~~~~ki~rItgLDPAg 187 (331)
T PF00151_consen 141 LINNFGVPPENIHLIGHSLGAHVAGFAGKYLKGGGKIGRITGLDPAG 187 (331)
T ss_dssp HHHHH---GGGEEEEEETCHHHHHHHHHHHTTT---SSEEEEES-B-
T ss_pred HHhhcCCChhHEEEEeeccchhhhhhhhhhccCcceeeEEEecCccc
Confidence 765556789999999999999999999887655 667777777653
No 221
>PF05577 Peptidase_S28: Serine carboxypeptidase S28; InterPro: IPR008758 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S28 (clan SC). The predicted active site residues for members of this family and family S10 occur in the same order in the sequence: S, D, H. These serine proteases include several eukaryotic enzymes such as lysosomal Pro-X carboxypeptidase, dipeptidyl-peptidase II, and thymus-specific serine peptidase [, , , ].; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3N2Z_B 3JYH_A 3N0T_C.
Probab=97.62 E-value=9.4e-05 Score=75.10 Aligned_cols=116 Identities=19% Similarity=0.168 Sum_probs=70.1
Q ss_pred ceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCchhhHHHHhhccCC----CchHHHHHHHHHH
Q 008873 328 YKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGR----IDAEDQLTGAEWL 403 (550)
Q Consensus 328 ~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~~~~~~~~~~~~~----~~~~D~~~~~~~l 403 (550)
.|++|++-| -+... ..+ .......++..+.|-.|+++.+|-.|.|-. +......++.. ..+.|+...++++
T Consensus 29 gpifl~~gg-E~~~~--~~~-~~~~~~~~lA~~~~a~~v~lEHRyYG~S~P-~~~~s~~nL~yLt~~QALaD~a~F~~~~ 103 (434)
T PF05577_consen 29 GPIFLYIGG-EGPIE--PFW-INNGFMWELAKEFGALVVALEHRYYGKSQP-FGDLSTENLRYLTSEQALADLAYFIRYV 103 (434)
T ss_dssp SEEEEEE---SS-HH--HHH-HH-HHHHHHHHHHTEEEEEE--TTSTTB-T-TGGGGGSTTTC-SHHHHHHHHHHHHHHH
T ss_pred CCEEEEECC-CCccc--hhh-hcCChHHHHHHHcCCcEEEeehhhhcCCCC-ccccchhhHHhcCHHHHHHHHHHHHHHH
Confidence 588888844 22211 111 111233444457899999999998887642 22222222222 2478888899998
Q ss_pred HHcC-CCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCC
Q 008873 404 IKQG-LAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTS 448 (550)
Q Consensus 404 ~~~~-~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~ 448 (550)
..+. ..+..+++++|.||||.+++++-.++|++|.++++.++++.
T Consensus 104 ~~~~~~~~~~pwI~~GgSY~G~Laaw~r~kyP~~~~ga~ASSapv~ 149 (434)
T PF05577_consen 104 KKKYNTAPNSPWIVFGGSYGGALAAWFRLKYPHLFDGAWASSAPVQ 149 (434)
T ss_dssp HHHTTTGCC--EEEEEETHHHHHHHHHHHH-TTT-SEEEEET--CC
T ss_pred HHhhcCCCCCCEEEECCcchhHHHHHHHhhCCCeeEEEEeccceee
Confidence 8653 34556899999999999999999999999999988776543
No 222
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=97.61 E-value=0.054 Score=49.69 Aligned_cols=180 Identities=12% Similarity=0.118 Sum_probs=96.4
Q ss_pred EEEEEECCCCceEEEEcccCCCCCCCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCceeec
Q 008873 60 RLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNL 139 (550)
Q Consensus 60 ~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~ 139 (550)
.|..+++.+.+-.+. + ..-...+.+++-||-+...+-.+... . |.+-|+..-+++-+.......
T Consensus 81 tIryLsl~dNkylRY-F-------~GH~~~V~sL~~sP~~d~FlS~S~D~--t--vrLWDlR~~~cqg~l~~~~~p---- 144 (311)
T KOG1446|consen 81 TIRYLSLHDNKYLRY-F-------PGHKKRVNSLSVSPKDDTFLSSSLDK--T--VRLWDLRVKKCQGLLNLSGRP---- 144 (311)
T ss_pred ceEEEEeecCceEEE-c-------CCCCceEEEEEecCCCCeEEecccCC--e--EEeeEecCCCCceEEecCCCc----
Confidence 466667776654332 1 12234677788888776443333221 1 444445555665554433221
Q ss_pred cCccccCCCCCccCCCcEEEEEccCCccEEEEEeCCC---cee--eccccc---CeEEEEEEeEeecCCEEEEEEcCCCC
Q 008873 140 HDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDING---TCL--GPITEG---DWMVEQIVGVNEASGQVYFTGTLDGP 211 (550)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~~---~~~--~~lT~~---~~~~~~~~~~s~dg~~l~f~~~~~~~ 211 (550)
.. +.+|.|++|+.-.++. .|-++|+.. |.. -.++.+ +|. . ..+|+|||.|+++.+.
T Consensus 145 --i~-------AfDp~GLifA~~~~~~-~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~--~-l~FS~dGK~iLlsT~~--- 208 (311)
T KOG1446|consen 145 --IA-------AFDPEGLIFALANGSE-LIKLYDLRSFDKGPFTTFSITDNDEAEWT--D-LEFSPDGKSILLSTNA--- 208 (311)
T ss_pred --ce-------eECCCCcEEEEecCCC-eEEEEEecccCCCCceeEccCCCCcccee--e-eEEcCCCCEEEEEeCC---
Confidence 11 3467787776543332 677777533 211 123322 332 2 3489999999888664
Q ss_pred ceeEEEEEEeCCCCCCCCCCCeeeCC--CCc--eEEEEECCCCCEEEEeecCCCCCCEEEEEEcCCCceeEeccC
Q 008873 212 LESHLYCAKLYPDWNHTLEAPVKLTN--GKG--KHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLYE 282 (550)
Q Consensus 212 ~~~~l~~v~~~~~g~~~~~~~~~lt~--~~~--~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~~~~~l~~ 282 (550)
..+|.++.- +|. ....++. ..+ -.++.|+||++.++ ..++ -..|.+.++++|.+...+..
T Consensus 209 --s~~~~lDAf-~G~----~~~tfs~~~~~~~~~~~a~ftPds~Fvl-~gs~---dg~i~vw~~~tg~~v~~~~~ 272 (311)
T KOG1446|consen 209 --SFIYLLDAF-DGT----VKSTFSGYPNAGNLPLSATFTPDSKFVL-SGSD---DGTIHVWNLETGKKVAVLRG 272 (311)
T ss_pred --CcEEEEEcc-CCc----EeeeEeeccCCCCcceeEEECCCCcEEE-EecC---CCcEEEEEcCCCcEeeEecC
Confidence 356677752 443 1111111 111 24568999998654 3332 24788888888987655544
No 223
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=97.60 E-value=0.0036 Score=59.95 Aligned_cols=179 Identities=13% Similarity=0.107 Sum_probs=98.6
Q ss_pred EEEEECCCCceEEEEcccCCCCCCCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCceeecc
Q 008873 61 LGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLH 140 (550)
Q Consensus 61 l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~ 140 (550)
+|.||+++++..++...- .-.+..+-.+..|||+.+|++.-+ ...|+++.+.|++.- +...-++-+.
T Consensus 282 ~ysyDle~ak~~k~~~~~-----g~e~~~~e~FeVShd~~fia~~G~----~G~I~lLhakT~eli--~s~KieG~v~-- 348 (514)
T KOG2055|consen 282 LYSYDLETAKVTKLKPPY-----GVEEKSMERFEVSHDSNFIAIAGN----NGHIHLLHAKTKELI--TSFKIEGVVS-- 348 (514)
T ss_pred EEEeeccccccccccCCC-----CcccchhheeEecCCCCeEEEccc----CceEEeehhhhhhhh--heeeeccEEe--
Confidence 789999999988774421 112446677889999998877632 235999999988732 2211111110
Q ss_pred CccccCCCCCccCCC-cEEEEEccCCccEEEEEeCCCce-eeccc-ccCeEEEEEEeEeecCCEEEEEEcCCCCceeEEE
Q 008873 141 DCFTPLDKGVTKYSG-GFIWASEKTGFRHLYLHDINGTC-LGPIT-EGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLY 217 (550)
Q Consensus 141 ~~~~~~~~~~~~~~~-~~~~~s~~~g~~~l~~~~~~~~~-~~~lT-~~~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~ 217 (550)
.+.+ +.| +.++++.. ..++|++|+.... .++.+ .|.-.-..+ ..|.+|.+++. ++..+ -.+||
T Consensus 349 -~~~f-------sSdsk~l~~~~~--~GeV~v~nl~~~~~~~rf~D~G~v~gts~-~~S~ng~ylA~-GS~~G--iVNIY 414 (514)
T KOG2055|consen 349 -DFTF-------SSDSKELLASGG--TGEVYVWNLRQNSCLHRFVDDGSVHGTSL-CISLNGSYLAT-GSDSG--IVNIY 414 (514)
T ss_pred -eEEE-------ecCCcEEEEEcC--CceEEEEecCCcceEEEEeecCccceeee-eecCCCceEEe-ccCcc--eEEEe
Confidence 1112 222 36666644 4489999976532 22222 222222233 47788874443 33333 47888
Q ss_pred EEEeCCCCCCCCCCCeeeCC----CCceEEEEECCCCCEEEEeecCCCCCCEEEEEEcC
Q 008873 218 CAKLYPDWNHTLEAPVKLTN----GKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQ 272 (550)
Q Consensus 218 ~v~~~~~g~~~~~~~~~lt~----~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~ 272 (550)
.-+-...++ .|+.+.. ...+.+..|++|+..|++. |+. .+-.+.++++.
T Consensus 415 d~~s~~~s~----~PkPik~~dNLtt~Itsl~Fn~d~qiLAia-S~~-~knalrLVHvP 467 (514)
T KOG2055|consen 415 DGNSCFAST----NPKPIKTVDNLTTAITSLQFNHDAQILAIA-SRV-KKNALRLVHVP 467 (514)
T ss_pred ccchhhccC----CCCchhhhhhhheeeeeeeeCcchhhhhhh-hhc-cccceEEEecc
Confidence 644221222 2222221 1246777899999766544 443 33366777764
No 224
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=97.60 E-value=0.0018 Score=60.44 Aligned_cols=116 Identities=16% Similarity=0.260 Sum_probs=62.6
Q ss_pred CceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCce--EEEEEeecCceeeccCccccCCCCCccCCC-cEEEEEcc
Q 008873 87 EEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQR--KVILVEELDSWVNLHDCFTPLDKGVTKYSG-GFIWASEK 163 (550)
Q Consensus 87 ~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~--~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~ 163 (550)
..-+..++|||||+.|+.-+..+ .|.+.|+++|+. +.|..+ ..|+..- .+.|.. ..++ +.+..+.+
T Consensus 157 ~~WVlcvawsPDgk~iASG~~dg----~I~lwdpktg~~~g~~l~gH--~K~It~L-awep~h----l~p~~r~las~sk 225 (480)
T KOG0271|consen 157 KNWVLCVAWSPDGKKIASGSKDG----SIRLWDPKTGQQIGRALRGH--KKWITAL-AWEPLH----LVPPCRRLASSSK 225 (480)
T ss_pred ccEEEEEEECCCcchhhccccCC----eEEEecCCCCCcccccccCc--ccceeEE-eecccc----cCCCccceecccC
Confidence 34567899999999998776554 388888998874 233222 2344220 111111 1122 24444455
Q ss_pred CCccEEEEEeCCCce-eecccccCeEEEEEEeEeecCCEEEEEEcCCCCceeEEEEEE
Q 008873 164 TGFRHLYLHDINGTC-LGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAK 220 (550)
Q Consensus 164 ~g~~~l~~~~~~~~~-~~~lT~~~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~~v~ 220 (550)
+|.-.|| |...+. .+.|+.+.-.|.-+ .| .|..+.+++..+.. ..+|+..
T Consensus 226 Dg~vrIW--d~~~~~~~~~lsgHT~~VTCv-rw--GG~gliySgS~Drt--Ikvw~a~ 276 (480)
T KOG0271|consen 226 DGSVRIW--DTKLGTCVRTLSGHTASVTCV-RW--GGEGLIYSGSQDRT--IKVWRAL 276 (480)
T ss_pred CCCEEEE--EccCceEEEEeccCccceEEE-EE--cCCceEEecCCCce--EEEEEcc
Confidence 6654444 444443 34444444444432 24 56668888877653 6777543
No 225
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=97.60 E-value=0.001 Score=62.86 Aligned_cols=184 Identities=13% Similarity=0.166 Sum_probs=103.0
Q ss_pred CCccceEEEcCCCCeEEEEEEeCCCCCeEEEeecCCCCCCCCCcccccCCCCCCCCCeEEEEEEECCCCceEEEEcccCC
Q 008873 1 MDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQCGG 80 (550)
Q Consensus 1 ~~~~~~~~wSPdg~~lay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~ 80 (550)
+.|...+.|.|+|++|+=+++|.+= .+||+.+++.--+.
T Consensus 261 ~~RVs~VafHPsG~~L~TasfD~tW------------------------------------RlWD~~tk~ElL~Q----- 299 (459)
T KOG0272|consen 261 LARVSRVAFHPSGKFLGTASFDSTW------------------------------------RLWDLETKSELLLQ----- 299 (459)
T ss_pred hhhheeeeecCCCceeeecccccch------------------------------------hhcccccchhhHhh-----
Confidence 3577889999999999988887431 46899987653321
Q ss_pred CCCCCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCceeeccCccccCCCCCccCCCcEEEE
Q 008873 81 TDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYSGGFIWA 160 (550)
Q Consensus 81 ~~~~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (550)
..-...+.+++|-|||.+++...... -..|| |+.+|.+......-. .+.++- .|+|+|+-..
T Consensus 300 ---EGHs~~v~~iaf~~DGSL~~tGGlD~--~~RvW--DlRtgr~im~L~gH~------k~I~~V-----~fsPNGy~lA 361 (459)
T KOG0272|consen 300 ---EGHSKGVFSIAFQPDGSLAATGGLDS--LGRVW--DLRTGRCIMFLAGHI------KEILSV-----AFSPNGYHLA 361 (459)
T ss_pred ---cccccccceeEecCCCceeeccCccc--hhhee--ecccCcEEEEecccc------cceeeE-----eECCCceEEe
Confidence 23345788899999999887643222 12344 456776654443211 111111 4678887655
Q ss_pred Ecc-CCccEEEEEeCCCce-eecccccCeEEEEEEeEeecCCEEEEEEcCCCCceeEEEEEEeCCCCCCCCCCCeeeCCC
Q 008873 161 SEK-TGFRHLYLHDINGTC-LGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTNG 238 (550)
Q Consensus 161 s~~-~g~~~l~~~~~~~~~-~~~lT~~~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~~v~~~~~g~~~~~~~~~lt~~ 238 (550)
+-. ++.-.||- +.... .-.+-.+.-.|..+ .++|+...++.++.-++. ..||.-. +.. ..+.|..-
T Consensus 362 Tgs~Dnt~kVWD--LR~r~~ly~ipAH~nlVS~V-k~~p~~g~fL~TasyD~t--~kiWs~~---~~~----~~ksLaGH 429 (459)
T KOG0272|consen 362 TGSSDNTCKVWD--LRMRSELYTIPAHSNLVSQV-KYSPQEGYFLVTASYDNT--VKIWSTR---TWS----PLKSLAGH 429 (459)
T ss_pred ecCCCCcEEEee--ecccccceecccccchhhhe-EecccCCeEEEEcccCcc--eeeecCC---Ccc----cchhhcCC
Confidence 422 22223333 32221 11222222234444 388876677777776653 6676322 121 23344432
Q ss_pred C-ceEEEEECCCCCEEEE
Q 008873 239 K-GKHVAVLDHNMRNFVD 255 (550)
Q Consensus 239 ~-~~~~~~~s~dg~~l~~ 255 (550)
+ .+.++.+|+|+..++-
T Consensus 430 e~kV~s~Dis~d~~~i~t 447 (459)
T KOG0272|consen 430 EGKVISLDISPDSQAIAT 447 (459)
T ss_pred ccceEEEEeccCCceEEE
Confidence 2 3778899999987643
No 226
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=97.57 E-value=0.0073 Score=56.37 Aligned_cols=118 Identities=14% Similarity=0.122 Sum_probs=72.2
Q ss_pred CeEEEEEEECCCCceEEEEc-ccCCCCCCCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCc
Q 008873 57 VKVRLGVVSAAGGPVSWMDL-QCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDS 135 (550)
Q Consensus 57 ~~~~l~~~d~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~ 135 (550)
.++.++-+|-..|+...|.. .+-|.. .........+..||||++|+. ++|..+.-.+|.++..+|+...+......+
T Consensus 213 stV~v~~y~~~~g~~~~lQ~i~tlP~d-F~g~~~~aaIhis~dGrFLYa-sNRg~dsI~~f~V~~~~g~L~~~~~~~teg 290 (346)
T COG2706 213 STVDVLEYNPAVGKFEELQTIDTLPED-FTGTNWAAAIHISPDGRFLYA-SNRGHDSIAVFSVDPDGGKLELVGITPTEG 290 (346)
T ss_pred CEEEEEEEcCCCceEEEeeeeccCccc-cCCCCceeEEEECCCCCEEEE-ecCCCCeEEEEEEcCCCCEEEEEEEeccCC
Confidence 34566667766677776633 212211 223345677899999998754 589888778999999999866554332221
Q ss_pred eeeccCccccCCCCCccCCCcEEEEEcc-CCccEEEEEeCCCceeecccc
Q 008873 136 WVNLHDCFTPLDKGVTKYSGGFIWASEK-TGFRHLYLHDINGTCLGPITE 184 (550)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~-~g~~~l~~~~~~~~~~~~lT~ 184 (550)
=. ...|.+. +.+++++++.+ +..-.+|.+|.++|+...+..
T Consensus 291 ~~--PR~F~i~------~~g~~Liaa~q~sd~i~vf~~d~~TG~L~~~~~ 332 (346)
T COG2706 291 QF--PRDFNIN------PSGRFLIAANQKSDNITVFERDKETGRLTLLGR 332 (346)
T ss_pred cC--CccceeC------CCCCEEEEEccCCCcEEEEEEcCCCceEEeccc
Confidence 00 0113331 23346666554 456788999988887666543
No 227
>PRK10115 protease 2; Provisional
Probab=97.56 E-value=0.032 Score=59.82 Aligned_cols=114 Identities=13% Similarity=0.018 Sum_probs=68.5
Q ss_pred ceeEEEEECCCCeEEEEEEecCC-CceEEEEEECCCCc--eEEEEEeecCceeeccCccccCCCCCccC--CCcEEEEEc
Q 008873 88 EYLARVNWMHGNILTAQVLNRSQ-TKLKVLKFDIKTGQ--RKVILVEELDSWVNLHDCFTPLDKGVTKY--SGGFIWASE 162 (550)
Q Consensus 88 ~~~~~~~wspDg~~i~~~~~r~~-~~~~l~~~~~~~g~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~s~ 162 (550)
..+..+.|||||++|++..+... +..+|+++++++|+ ...|.... +.. .|. +++|+|.+.
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~----------~~~-----~w~~D~~~~~y~~~ 191 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVE----------PSF-----VWANDSWTFYYVRK 191 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcc----------eEE-----EEeeCCCEEEEEEe
Confidence 45677899999998888866654 56789999999997 33332211 000 233 345777665
Q ss_pred cCC---ccEEEEEeCCCc--eeeccccc---CeEEEEEEeEeecCCEEEEEEcCCCCceeEEEE
Q 008873 163 KTG---FRHLYLHDINGT--CLGPITEG---DWMVEQIVGVNEASGQVYFTGTLDGPLESHLYC 218 (550)
Q Consensus 163 ~~g---~~~l~~~~~~~~--~~~~lT~~---~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~~ 218 (550)
+.+ ..+||++++.++ +.+.|-.+ .+.+. ...+.|++.+++.+......+..++.
T Consensus 192 ~~~~~~~~~v~~h~lgt~~~~d~lv~~e~~~~~~~~--~~~s~d~~~l~i~~~~~~~~~~~l~~ 253 (686)
T PRK10115 192 HPVTLLPYQVWRHTIGTPASQDELVYEEKDDTFYVS--LHKTTSKHYVVIHLASATTSEVLLLD 253 (686)
T ss_pred cCCCCCCCEEEEEECCCChhHCeEEEeeCCCCEEEE--EEEcCCCCEEEEEEECCccccEEEEE
Confidence 432 378999998776 44445443 12221 22345888887666654433344443
No 228
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=97.56 E-value=0.032 Score=55.00 Aligned_cols=182 Identities=16% Similarity=0.138 Sum_probs=97.1
Q ss_pred EEEEEECCCCceE-EEEcccCCCCCCCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceE-EEEEeecCcee
Q 008873 60 RLGVVSAAGGPVS-WMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRK-VILVEELDSWV 137 (550)
Q Consensus 60 ~l~~~d~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~-~l~~~~~~~~~ 137 (550)
+|.++|.++.+.. .+... ......+.+||||++++.. +|.. .|.++|+.+++.. ++.....+.-
T Consensus 17 ~v~viD~~t~~~~~~i~~~---------~~~h~~~~~s~Dgr~~yv~-~rdg---~vsviD~~~~~~v~~i~~G~~~~~- 82 (369)
T PF02239_consen 17 SVAVIDGATNKVVARIPTG---------GAPHAGLKFSPDGRYLYVA-NRDG---TVSVIDLATGKVVATIKVGGNPRG- 82 (369)
T ss_dssp EEEEEETTT-SEEEEEE-S---------TTEEEEEE-TT-SSEEEEE-ETTS---EEEEEETTSSSEEEEEE-SSEEEE-
T ss_pred EEEEEECCCCeEEEEEcCC---------CCceeEEEecCCCCEEEEE-cCCC---eEEEEECCcccEEEEEecCCCcce-
Confidence 5788999987754 44331 1123456799999976655 5642 5999999999853 3322111110
Q ss_pred eccCccccCCCCCccCCCc-EEEEEccCCccEEEEEeCCCcee-ecccccCe-------EEEEEEeEeecCCEEEEEEcC
Q 008873 138 NLHDCFTPLDKGVTKYSGG-FIWASEKTGFRHLYLHDINGTCL-GPITEGDW-------MVEQIVGVNEASGQVYFTGTL 208 (550)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~-~~~~s~~~g~~~l~~~~~~~~~~-~~lT~~~~-------~~~~~~~~s~dg~~l~f~~~~ 208 (550)
+ ..++|+ ++++++. ....+-++|..+.+. +.+..+.. .+..+. -++.+..+++...+
T Consensus 83 -----i-------~~s~DG~~~~v~n~-~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv-~s~~~~~fVv~lkd 148 (369)
T PF02239_consen 83 -----I-------AVSPDGKYVYVANY-EPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIV-ASPGRPEFVVNLKD 148 (369)
T ss_dssp -----E-------EE--TTTEEEEEEE-ETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEE-E-SSSSEEEEEETT
T ss_pred -----E-------EEcCCCCEEEEEec-CCCceeEeccccccceeecccccccccccCCCceeEE-ecCCCCEEEEEEcc
Confidence 1 123444 7776654 124678888766543 33332211 123333 46676666655554
Q ss_pred CCCceeEEEEEEeCCCCCCCCCCCeeeCCCCceEEEEECCCCCEEEEeecCCCCCCEEEEEEcCCCceeEe
Q 008873 209 DGPLESHLYCAKLYPDWNHTLEAPVKLTNGKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLP 279 (550)
Q Consensus 209 ~~~~~~~l~~v~~~~~g~~~~~~~~~lt~~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~~~~~ 279 (550)
. -+++.++.. +.. . ...+.+..+...+...|+|++++++...... ..+.++|+++++....
T Consensus 149 ~----~~I~vVdy~-d~~-~-~~~~~i~~g~~~~D~~~dpdgry~~va~~~s---n~i~viD~~~~k~v~~ 209 (369)
T PF02239_consen 149 T----GEIWVVDYS-DPK-N-LKVTTIKVGRFPHDGGFDPDGRYFLVAANGS---NKIAVIDTKTGKLVAL 209 (369)
T ss_dssp T----TEEEEEETT-TSS-C-EEEEEEE--TTEEEEEE-TTSSEEEEEEGGG---TEEEEEETTTTEEEEE
T ss_pred C----CeEEEEEec-ccc-c-cceeeecccccccccccCcccceeeeccccc---ceeEEEeeccceEEEE
Confidence 3 378888873 221 0 1123333444567889999999986654433 2888999887765433
No 229
>KOG2931 consensus Differentiation-related gene 1 protein (NDR1 protein), related proteins [Function unknown]
Probab=97.55 E-value=0.0077 Score=54.88 Aligned_cols=229 Identities=12% Similarity=0.057 Sum_probs=129.0
Q ss_pred CeEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccc-hhHhHHHHhCCcEEEEECCCCCCCC
Q 008873 298 PDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTV-DMRAQYLRSKGILVWKLDNRGTARR 376 (550)
Q Consensus 298 ~~~~~~~~~~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~-~~~~~~l~~~G~~vv~~d~rG~g~~ 376 (550)
.++..+++..|. ++..++--.. +++|+||-.|.-+-.... .|..-+ ...++.+..+ +.|+.+|.+|+-.-
T Consensus 22 ~~e~~V~T~~G~-v~V~V~Gd~~-----~~kpaiiTyhDlglN~~s--cFq~ff~~p~m~ei~~~-fcv~HV~~PGqe~g 92 (326)
T KOG2931|consen 22 CQEHDVETAHGV-VHVTVYGDPK-----GNKPAIITYHDLGLNHKS--CFQGFFNFPDMAEILEH-FCVYHVDAPGQEDG 92 (326)
T ss_pred ceeeeecccccc-EEEEEecCCC-----CCCceEEEecccccchHh--HhHHhhcCHhHHHHHhh-eEEEecCCCccccC
Confidence 466677776664 7777775332 346889999983322110 011111 1124455566 99999999987422
Q ss_pred chhhHHHHhhccCCCchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCcccccc--
Q 008873 377 GLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDT-- 454 (550)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~~~~~-- 454 (550)
. .....++..-..+|+.+-+-.+..+- .-+.|+-+|--.|+++-.+.|..||+++-++|++++...-..+..
T Consensus 93 A----p~~p~~y~yPsmd~LAd~l~~VL~~f--~lk~vIg~GvGAGAyIL~rFAl~hp~rV~GLvLIn~~~~a~gwiew~ 166 (326)
T KOG2931|consen 93 A----PSFPEGYPYPSMDDLADMLPEVLDHF--GLKSVIGMGVGAGAYILARFALNHPERVLGLVLINCDPCAKGWIEWA 166 (326)
T ss_pred C----ccCCCCCCCCCHHHHHHHHHHHHHhc--CcceEEEecccccHHHHHHHHhcChhheeEEEEEecCCCCchHHHHH
Confidence 1 12222222334566666665555543 335688889999999999999999999999999877543211100
Q ss_pred --------------------hhhhhccCCCC---------------------CCcc----ccccCChhhh-----hhcCC
Q 008873 455 --------------------FYTEKYMGLPS---------------------EDPV----GYEYSSVMHH-----VHKMK 484 (550)
Q Consensus 455 --------------------~~~~~~~g~~~---------------------~~~~----~~~~~~~~~~-----~~~i~ 484 (550)
+...+++|... .+.. .|.....+.. ...++
T Consensus 167 ~~K~~s~~l~~~Gmt~~~~d~ll~H~Fg~e~~~~~~diVq~Yr~~l~~~~N~~Nl~~fl~ayn~R~DL~~~r~~~~~tlk 246 (326)
T KOG2931|consen 167 YNKVSSNLLYYYGMTQGVKDYLLAHHFGKEELGNNSDIVQEYRQHLGERLNPKNLALFLNAYNGRRDLSIERPKLGTTLK 246 (326)
T ss_pred HHHHHHHHHHhhchhhhHHHHHHHHHhccccccccHHHHHHHHHHHHhcCChhHHHHHHHHhcCCCCccccCCCcCcccc
Confidence 00111111110 1111 1111111110 11456
Q ss_pred CcEEEEecCCCCCCChHHHHHHHHHHHHcCCCeEEEEcCCCCCcCCCCCcHHHHHHHHHHHH
Q 008873 485 GKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFI 546 (550)
Q Consensus 485 ~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p~~~H~~~~~~~~~~~~~~~~~fl 546 (550)
+|+|++.|++-+. .+...++..+|.. ....++...+++-... .+....+.+.+.=||
T Consensus 247 c~vllvvGd~Sp~--~~~vv~~n~~Ldp--~~ttllk~~d~g~l~~-e~qP~kl~ea~~~Fl 303 (326)
T KOG2931|consen 247 CPVLLVVGDNSPH--VSAVVECNSKLDP--TYTTLLKMADCGGLVQ-EEQPGKLAEAFKYFL 303 (326)
T ss_pred ccEEEEecCCCch--hhhhhhhhcccCc--ccceEEEEcccCCccc-ccCchHHHHHHHHHH
Confidence 9999999998763 4466667666632 4667888888877652 223344445554444
No 230
>PTZ00421 coronin; Provisional
Probab=97.55 E-value=0.064 Score=54.98 Aligned_cols=164 Identities=11% Similarity=0.091 Sum_probs=79.4
Q ss_pred CceeEEEEECCCCe-EEEEEEecCCCceEEEEEECCCCceEEEEEeecCceeeccCccccCCCCCccCCCc-EEEEEccC
Q 008873 87 EEYLARVNWMHGNI-LTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYSGG-FIWASEKT 164 (550)
Q Consensus 87 ~~~~~~~~wspDg~-~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~ 164 (550)
...+..++|+|++. +++...... .|.+.|+.+++.......... .+. .+ .|++++ +++.+..+
T Consensus 125 ~~~V~~l~f~P~~~~iLaSgs~Dg----tVrIWDl~tg~~~~~l~~h~~-~V~------sl----a~spdG~lLatgs~D 189 (493)
T PTZ00421 125 TKKVGIVSFHPSAMNVLASAGADM----VVNVWDVERGKAVEVIKCHSD-QIT------SL----EWNLDGSLLCTTSKD 189 (493)
T ss_pred CCcEEEEEeCcCCCCEEEEEeCCC----EEEEEECCCCeEEEEEcCCCC-ceE------EE----EEECCCCEEEEecCC
Confidence 45677899999975 555443221 366667787765433221111 110 00 244544 55554444
Q ss_pred CccEEEEEeCCCcee-ecccccCeEEEEEEeEeecCCEEEEEEcCCCCceeEEEEEEeCCCCCCCCCCCeee---CCCCc
Q 008873 165 GFRHLYLHDINGTCL-GPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKL---TNGKG 240 (550)
Q Consensus 165 g~~~l~~~~~~~~~~-~~lT~~~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~~v~~~~~g~~~~~~~~~l---t~~~~ 240 (550)
| .|.++|+.+++. ..+....-.......|.++++.|+-.+.... ....|...++. ... .+... .....
T Consensus 190 g--~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s-~Dr~VklWDlr-~~~----~p~~~~~~d~~~~ 261 (493)
T PTZ00421 190 K--KLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKS-QQRQIMLWDTR-KMA----SPYSTVDLDQSSA 261 (493)
T ss_pred C--EEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCC-CCCeEEEEeCC-CCC----CceeEeccCCCCc
Confidence 4 466777655432 2332221111112348888776665443211 11334444652 111 12221 11123
Q ss_pred eEEEEECCCCCEEEEeecCCCCCCEEEEEEcCCCce
Q 008873 241 KHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSL 276 (550)
Q Consensus 241 ~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~~ 276 (550)
...+.+++|++.++....+ ...+.++++.+++.
T Consensus 262 ~~~~~~d~d~~~L~lggkg---Dg~Iriwdl~~~~~ 294 (493)
T PTZ00421 262 LFIPFFDEDTNLLYIGSKG---EGNIRCFELMNERL 294 (493)
T ss_pred eEEEEEcCCCCEEEEEEeC---CCeEEEEEeeCCce
Confidence 4445789999876554321 23677788766653
No 231
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.53 E-value=0.02 Score=56.44 Aligned_cols=163 Identities=8% Similarity=0.000 Sum_probs=88.3
Q ss_pred eeEEEEECCCCeEEEEEEecCCC-ceEEEEEECCCCceE---EEEEeecCceeeccCccccCCCCCccCCCcEEEEEcc-
Q 008873 89 YLARVNWMHGNILTAQVLNRSQT-KLKVLKFDIKTGQRK---VILVEELDSWVNLHDCFTPLDKGVTKYSGGFIWASEK- 163 (550)
Q Consensus 89 ~~~~~~wspDg~~i~~~~~r~~~-~~~l~~~~~~~g~~~---~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~- 163 (550)
.+..+.|||-+.+|+++.....+ ..++-++.+.+++.- .|..-.+-. +.+ +.+++-+-+-.+|
T Consensus 348 gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDck-------LhW-----Qk~gdyLcvkvdR~ 415 (698)
T KOG2314|consen 348 GIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCK-------LHW-----QKSGDYLCVKVDRH 415 (698)
T ss_pred cccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeeccceeeeccE-------EEe-----ccCCcEEEEEEEee
Confidence 34567899999999999755432 446777777776532 233221110 001 1234434444443
Q ss_pred --C---C-cc--EEEEEeCCCceeecccccCeEEEEEEeEeecCCEEEEEEcCCCCceeEEEEEEeCCCCCCCCCCCeee
Q 008873 164 --T---G-FR--HLYLHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKL 235 (550)
Q Consensus 164 --~---g-~~--~l~~~~~~~~~~~~lT~~~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~~v~~~~~g~~~~~~~~~l 235 (550)
. | +. +|+++.-..=-...+-- .-.+-.+ .|.|.|+++...+..........|.+.. .+. ++..+
T Consensus 416 tK~~~~g~f~n~eIfrireKdIpve~vel-ke~vi~F-aWEP~gdkF~vi~g~~~k~tvsfY~~e~--~~~----~~~lV 487 (698)
T KOG2314|consen 416 TKSKVKGQFSNLEIFRIREKDIPVEVVEL-KESVIAF-AWEPHGDKFAVISGNTVKNTVSFYAVET--NIK----KPSLV 487 (698)
T ss_pred ccccccceEeeEEEEEeeccCCCceeeec-chheeee-eeccCCCeEEEEEccccccceeEEEeec--CCC----chhhh
Confidence 2 2 33 44555321100111110 1122334 4999999988887655444578888875 232 23232
Q ss_pred CCC--CceEEEEECCCCCEEEEeecCCCCCCEEEEEEcC
Q 008873 236 TNG--KGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQ 272 (550)
Q Consensus 236 t~~--~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~ 272 (550)
..- .....+.|||.|+.++...-.. .-..++-+|+.
T Consensus 488 k~~dk~~~N~vfwsPkG~fvvva~l~s-~~g~l~F~D~~ 525 (698)
T KOG2314|consen 488 KELDKKFANTVFWSPKGRFVVVAALVS-RRGDLEFYDTD 525 (698)
T ss_pred hhhcccccceEEEcCCCcEEEEEEecc-cccceEEEecc
Confidence 221 3466778999999887665443 44577777764
No 232
>PF00450 Peptidase_S10: Serine carboxypeptidase; InterPro: IPR001563 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S10 (clan SC). The type example is carboxypeptidase Y from Saccharomyces cerevisiae (Baker's yeast) []. All known carboxypeptidases are either metallo carboxypeptidases or serine carboxypeptidases (3.4.16.5 from EC and 3.4.16.6 from EC). The catalytic activity of the serine carboxypeptidases, like that of the trypsin family serine proteases, is provided by a charge relay system involving an aspartic acid residue hydrogen-bonded to a histidine, which is itself hydrogen-bonded to a serine []. The sequences surrounding the active site serine and histidine residues are highly conserved in all the serine carboxypeptidases.; GO: 0004185 serine-type carboxypeptidase activity, 0006508 proteolysis; PDB: 1AC5_A 1WHS_B 3SC2_B 1WHT_A 1BCR_A 1BCS_A 1GXS_A 1IVY_A 1WPX_A 1YSC_A ....
Probab=97.52 E-value=0.0011 Score=67.06 Aligned_cols=144 Identities=14% Similarity=0.055 Sum_probs=78.8
Q ss_pred EEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccc---cccc-h--------hHhHHHHhCCcEEEEE
Q 008873 301 VQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSW---INTV-D--------MRAQYLRSKGILVWKL 368 (550)
Q Consensus 301 ~~~~~~~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~---~~~~-~--------~~~~~l~~~G~~vv~~ 368 (550)
+.+....+..+.+|++..... +++.|+||++.|||++......| ++.. . .....+. +-..+|.+
T Consensus 16 l~~~~~~~~~lfyw~~~s~~~---~~~~Pl~~wlnGGPG~SS~~g~f~e~GP~~~~~~~~~~l~~n~~sW~-~~an~l~i 91 (415)
T PF00450_consen 16 LPVNDNENAHLFYWFFESRND---PEDDPLILWLNGGPGCSSMWGLFGENGPFRINPDGPYTLEDNPYSWN-KFANLLFI 91 (415)
T ss_dssp EEECTTTTEEEEEEEEE-SSG---GCSS-EEEEEE-TTTB-THHHHHCTTSSEEEETTSTSEEEE-TT-GG-GTSEEEEE
T ss_pred EecCCCCCcEEEEEEEEeCCC---CCCccEEEEecCCceeccccccccccCceEEeecccccccccccccc-cccceEEE
Confidence 344444567899998876652 25779999999999976532111 1100 0 0011111 23789999
Q ss_pred CCC-CCCCCchhhHHHHhhccCCCchHHHHHHHHHHH-HcCCCCCCceEEEEechhHHHHHHHHh----hC------CCe
Q 008873 369 DNR-GTARRGLKFEASIKHNCGRIDAEDQLTGAEWLI-KQGLAKVGHIGLYGWSYGGYLSAITLA----RF------PDV 436 (550)
Q Consensus 369 d~r-G~g~~~~~~~~~~~~~~~~~~~~D~~~~~~~l~-~~~~~d~~~i~i~G~S~GG~~a~~~~~----~~------~~~ 436 (550)
|.+ |+|.|-....... ..-.....+|+..+++... +.+.....++.|.|.||||..+-.++. .. .-.
T Consensus 92 D~PvGtGfS~~~~~~~~-~~~~~~~a~~~~~fl~~f~~~~p~~~~~~~yi~GESYgG~yvP~~a~~i~~~~~~~~~~~in 170 (415)
T PF00450_consen 92 DQPVGTGFSYGNDPSDY-VWNDDQAAEDLYEFLQQFFQKFPEYRSNPLYIAGESYGGHYVPALASYILQQNKKGDQPKIN 170 (415)
T ss_dssp --STTSTT-EESSGGGG-S-SHHHHHHHHHHHHHHHHHHSGGGTTSEEEEEEETTHHHHHHHHHHHHHHHTCC--STTSE
T ss_pred eecCceEEeeccccccc-cchhhHHHHHHHHHHHHhhhhhhhccCCCEEEEccccccccchhhHHhhhhccccccccccc
Confidence 944 7775532211110 0000112456666655443 345566678999999999997765553 22 235
Q ss_pred eEEEEEcCCcCCc
Q 008873 437 FQCAVSGAPVTSW 449 (550)
Q Consensus 437 ~~~~v~~~~~~~~ 449 (550)
+++++++.|+++.
T Consensus 171 LkGi~IGng~~dp 183 (415)
T PF00450_consen 171 LKGIAIGNGWIDP 183 (415)
T ss_dssp EEEEEEESE-SBH
T ss_pred cccceecCccccc
Confidence 8999999998774
No 233
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=97.50 E-value=0.0074 Score=56.14 Aligned_cols=177 Identities=10% Similarity=0.036 Sum_probs=96.4
Q ss_pred EEEEECCCCceEEEEcccCCCCCCCCCceeEEEEECCCCe-EEEEEEecCCCceEEEEEECCCCceE----------EEE
Q 008873 61 LGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNI-LTAQVLNRSQTKLKVLKFDIKTGQRK----------VIL 129 (550)
Q Consensus 61 l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~wspDg~-~i~~~~~r~~~~~~l~~~~~~~g~~~----------~l~ 129 (550)
+.+||-.+..+..|+. .....+..++|-|-+. .++.. -|.. --||..+...--.+ ++.
T Consensus 122 Vriy~ksst~pt~Lks--------~sQrnvtclawRPlsaselavg-Cr~g--IciW~~s~tln~~r~~~~~s~~~~qvl 190 (445)
T KOG2139|consen 122 VRIYDKSSTCPTKLKS--------VSQRNVTCLAWRPLSASELAVG-CRAG--ICIWSDSRTLNANRNIRMMSTHHLQVL 190 (445)
T ss_pred EEEeccCCCCCceecc--------hhhcceeEEEeccCCcceeeee-ecce--eEEEEcCcccccccccccccccchhhe
Confidence 4455666555555533 3356788899999876 44332 2321 23444433322212 122
Q ss_pred EeecCceeeccCccccCCCCCccCCCcEEEEEccCCccEEEEEeCCCceeeccc-ccCeEEEEEEeEeecCCEEEEEEcC
Q 008873 130 VEELDSWVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTCLGPIT-EGDWMVEQIVGVNEASGQVYFTGTL 208 (550)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~~~~~~~lT-~~~~~~~~~~~~s~dg~~l~f~~~~ 208 (550)
..++.. + ...+ .|.+|+..+.+-.-|-.+|.+.+.+++...+|- .+-..+.. .-|||||.+|+.. +.
T Consensus 191 ~~pgh~--p----Vtsm----qwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~sl-LkwSPdgd~lfaA-t~ 258 (445)
T KOG2139|consen 191 QDPGHN--P----VTSM----QWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSL-LKWSPDGDVLFAA-TC 258 (445)
T ss_pred eCCCCc--e----eeEE----EEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceee-EEEcCCCCEEEEe-cc
Confidence 221110 0 1111 466777555555556788999999888777776 33222333 3599999866544 43
Q ss_pred CCCceeEEEEEEeCCCCCCCCCCCeeeCCCCceEEEEECCCCCEEEEeecCCCCCCEEEEEEc
Q 008873 209 DGPLESHLYCAKLYPDWNHTLEAPVKLTNGKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSL 271 (550)
Q Consensus 209 ~~~~~~~l~~v~~~~~g~~~~~~~~~lt~~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~ 271 (550)
+.. ..|+... .... ..+.+..........|||+|+.|.|+++.. |.+|.+..
T Consensus 259 dav--frlw~e~---q~wt---~erw~lgsgrvqtacWspcGsfLLf~~sgs---p~lysl~f 310 (445)
T KOG2139|consen 259 DAV--FRLWQEN---QSWT---KERWILGSGRVQTACWSPCGSFLLFACSGS---PRLYSLTF 310 (445)
T ss_pred cce--eeeehhc---ccce---ecceeccCCceeeeeecCCCCEEEEEEcCC---ceEEEEee
Confidence 321 4444211 1110 122333323456668999999999998764 57888776
No 234
>KOG4840 consensus Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=97.46 E-value=0.0024 Score=55.32 Aligned_cols=89 Identities=22% Similarity=0.193 Sum_probs=66.4
Q ss_pred hhHhHHHHhCCcEEEEECCCCCC-CCchhhHHHHhhccCCCchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHH
Q 008873 352 DMRAQYLRSKGILVWKLDNRGTA-RRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITL 430 (550)
Q Consensus 352 ~~~~~~l~~~G~~vv~~d~rG~g-~~~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~ 430 (550)
..+..+|.+.+|..|.+-.|.+- |+|. ..+ ..+.+|+..+++++..... .+.|.++|||-|..-.++++
T Consensus 56 ~~L~~~lde~~wslVq~q~~Ssy~G~Gt---~sl-----k~D~edl~~l~~Hi~~~~f--St~vVL~GhSTGcQdi~yYl 125 (299)
T KOG4840|consen 56 TMLNRYLDENSWSLVQPQLRSSYNGYGT---FSL-----KDDVEDLKCLLEHIQLCGF--STDVVLVGHSTGCQDIMYYL 125 (299)
T ss_pred HHHHHHHhhccceeeeeecccccccccc---ccc-----cccHHHHHHHHHHhhccCc--ccceEEEecCccchHHHHHH
Confidence 33567788999999999988652 2442 112 2347888888887765542 35899999999999999888
Q ss_pred hhC--CCeeEEEEEcCCcCCcc
Q 008873 431 ARF--PDVFQCAVSGAPVTSWD 450 (550)
Q Consensus 431 ~~~--~~~~~~~v~~~~~~~~~ 450 (550)
++. +..++++|+.+|+.|..
T Consensus 126 Tnt~~~r~iraaIlqApVSDrE 147 (299)
T KOG4840|consen 126 TNTTKDRKIRAAILQAPVSDRE 147 (299)
T ss_pred HhccchHHHHHHHHhCccchhh
Confidence 543 56789999999999865
No 235
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=97.46 E-value=0.055 Score=48.61 Aligned_cols=152 Identities=9% Similarity=0.130 Sum_probs=76.4
Q ss_pred ceEEEcCCCCeEEEEEEeCCCCCeEEEeecCCCCCCCCCcccccCCCCCCCCCeEEEEEEECCCCceEEEEcccCCCCCC
Q 008873 5 TGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQN 84 (550)
Q Consensus 5 ~~~~wSPdg~~lay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~ 84 (550)
+.++|||.|++||-.++|.+- .++.-..++-..++.- .
T Consensus 65 RsvAwsp~g~~La~aSFD~t~------------------------------------~Iw~k~~~efecv~~l------E 102 (312)
T KOG0645|consen 65 RSVAWSPHGRYLASASFDATV------------------------------------VIWKKEDGEFECVATL------E 102 (312)
T ss_pred eeeeecCCCcEEEEeeccceE------------------------------------EEeecCCCceeEEeee------e
Confidence 788999999999999887432 1222222332222221 2
Q ss_pred CCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEE---EEEeecCceeeccCccccCCCCCccCCC-cEEEE
Q 008873 85 YDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKV---ILVEELDSWVNLHDCFTPLDKGVTKYSG-GFIWA 160 (550)
Q Consensus 85 ~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~---l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 160 (550)
.-+.-+-.++||++|.+|+..+ |.. .-.||.++ +.++... |..+..+. +.. .|.|. +++|.
T Consensus 103 GHEnEVK~Vaws~sG~~LATCS-RDK-SVWiWe~d-eddEfec~aVL~~HtqDV-----K~V-------~WHPt~dlL~S 167 (312)
T KOG0645|consen 103 GHENEVKCVAWSASGNYLATCS-RDK-SVWIWEID-EDDEFECIAVLQEHTQDV-----KHV-------IWHPTEDLLFS 167 (312)
T ss_pred ccccceeEEEEcCCCCEEEEee-CCC-eEEEEEec-CCCcEEEEeeeccccccc-----cEE-------EEcCCcceeEE
Confidence 2344567789999999999885 432 22455555 3344332 22222110 000 23332 25544
Q ss_pred EccCCccEEEEEeCCCce---eecccccCeEEEEEEeEeecCCEEEEEEcCCCCceeEEEE
Q 008873 161 SEKTGFRHLYLHDINGTC---LGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYC 218 (550)
Q Consensus 161 s~~~g~~~l~~~~~~~~~---~~~lT~~~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~~ 218 (550)
..-+.--.+|..+. +.. ...|....-.+.... +++.|.+|.-.+++.. ..||+
T Consensus 168 ~SYDnTIk~~~~~~-dddW~c~~tl~g~~~TVW~~~-F~~~G~rl~s~sdD~t---v~Iw~ 223 (312)
T KOG0645|consen 168 CSYDNTIKVYRDED-DDDWECVQTLDGHENTVWSLA-FDNIGSRLVSCSDDGT---VSIWR 223 (312)
T ss_pred eccCCeEEEEeecC-CCCeeEEEEecCccceEEEEE-ecCCCceEEEecCCcc---eEeee
Confidence 32222223444332 222 223433333444443 7888888775554432 56666
No 236
>PLN02733 phosphatidylcholine-sterol O-acyltransferase
Probab=97.44 E-value=0.00037 Score=69.46 Aligned_cols=88 Identities=14% Similarity=0.003 Sum_probs=60.1
Q ss_pred cchhHhHHHHhCCcEEEEECCCCCCCCchhhHHHHhhccCCCchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHH
Q 008873 350 TVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAIT 429 (550)
Q Consensus 350 ~~~~~~~~l~~~G~~vv~~d~rG~g~~~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~ 429 (550)
.|..+.+.|.+.||.+ ..|.+|.|..-+.. ... . ..++++.+.++.+.++. ...+|.|+||||||.++...
T Consensus 109 ~~~~li~~L~~~GY~~-~~dL~g~gYDwR~~-~~~-~----~~~~~Lk~lIe~~~~~~--g~~kV~LVGHSMGGlva~~f 179 (440)
T PLN02733 109 YFHDMIEQLIKWGYKE-GKTLFGFGYDFRQS-NRL-P----ETMDGLKKKLETVYKAS--GGKKVNIISHSMGGLLVKCF 179 (440)
T ss_pred HHHHHHHHHHHcCCcc-CCCcccCCCCcccc-ccH-H----HHHHHHHHHHHHHHHHc--CCCCEEEEEECHhHHHHHHH
Confidence 3455688899999866 78999887543321 000 1 11456666666665542 34689999999999999998
Q ss_pred HhhCCCe----eEEEEEcCCc
Q 008873 430 LARFPDV----FQCAVSGAPV 446 (550)
Q Consensus 430 ~~~~~~~----~~~~v~~~~~ 446 (550)
+..+|+. ++..|++++.
T Consensus 180 l~~~p~~~~k~I~~~I~la~P 200 (440)
T PLN02733 180 MSLHSDVFEKYVNSWIAIAAP 200 (440)
T ss_pred HHHCCHhHHhHhccEEEECCC
Confidence 8877753 5666766554
No 237
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=97.44 E-value=0.06 Score=52.81 Aligned_cols=190 Identities=11% Similarity=0.046 Sum_probs=95.8
Q ss_pred EEEEEEECCCCceEEEEcccCCCCCCCCCceeEEEEECCCCeEEEEEEec--CCCceEEEEEECCCCceEEEEEeecCce
Q 008873 59 VRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNR--SQTKLKVLKFDIKTGQRKVILVEELDSW 136 (550)
Q Consensus 59 ~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~wspDg~~i~~~~~r--~~~~~~l~~~~~~~g~~~~l~~~~~~~~ 136 (550)
...+.+|.++++...+... .....-..+.++||+++|+.+... ....-..|.++.++|+.+.+......+-
T Consensus 15 I~~~~~d~~~g~l~~~~~~-------~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~ 87 (345)
T PF10282_consen 15 IYVFRFDEETGTLTLVQTV-------AEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGS 87 (345)
T ss_dssp EEEEEEETTTTEEEEEEEE-------EESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSS
T ss_pred EEEEEEcCCCCCceEeeee-------cCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCC
Confidence 4445556688887655431 011122336789999988777554 2344456778888788877766442211
Q ss_pred eeccCccccCCCCCccCCC-cEEEEEcc-CCccEEEEEeCCCceeec--ccc-----------cCeEEEEEEeEeecCCE
Q 008873 137 VNLHDCFTPLDKGVTKYSG-GFIWASEK-TGFRHLYLHDINGTCLGP--ITE-----------GDWMVEQIVGVNEASGQ 201 (550)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~-~~~~~s~~-~g~~~l~~~~~~~~~~~~--lT~-----------~~~~~~~~~~~s~dg~~ 201 (550)
.+.+ + ..+++ +++++++- +|.-.+|-++.+|.-... +.. ..-+.... .++|||+.
T Consensus 88 ~p~~--i-------~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v-~~~pdg~~ 157 (345)
T PF10282_consen 88 SPCH--I-------AVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQV-VFSPDGRF 157 (345)
T ss_dssp CEEE--E-------EECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEE-EE-TTSSE
T ss_pred CcEE--E-------EEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeE-EECCCCCE
Confidence 1110 0 11333 37777764 444444555544321111 110 01123333 48999999
Q ss_pred EEEEEcCCCCceeEEEEEEeCCCCC-CCCCCCeeeCCCCceEEEEECCCCCEEEEeecCCCCCCEEEEEEcC
Q 008873 202 VYFTGTLDGPLESHLYCAKLYPDWN-HTLEAPVKLTNGKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQ 272 (550)
Q Consensus 202 l~f~~~~~~~~~~~l~~v~~~~~g~-~~~~~~~~lt~~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~ 272 (550)
+|..-...+ ...+|.++- ... ........+..+.|-..+.|+||+++++.+..-. ..|.+++..
T Consensus 158 v~v~dlG~D--~v~~~~~~~--~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s---~~v~v~~~~ 222 (345)
T PF10282_consen 158 VYVPDLGAD--RVYVYDIDD--DTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELS---NTVSVFDYD 222 (345)
T ss_dssp EEEEETTTT--EEEEEEE-T--TS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTT---TEEEEEEEE
T ss_pred EEEEecCCC--EEEEEEEeC--CCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCC---CcEEEEeec
Confidence 987655433 244444443 221 0000112344455666778999999876665433 355555554
No 238
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=97.44 E-value=0.0037 Score=59.87 Aligned_cols=167 Identities=10% Similarity=0.059 Sum_probs=92.2
Q ss_pred EEEEEECCCCceE-EEEcccCCCCCCCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCceee
Q 008873 60 RLGVVSAAGGPVS-WMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVN 138 (550)
Q Consensus 60 ~l~~~d~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~ 138 (550)
.|+++-..|++.. .+ .-++.+..++||.||+.|+.+...+ +||..|+....+.......+...
T Consensus 326 ~I~lLhakT~eli~s~----------KieG~v~~~~fsSdsk~l~~~~~~G----eV~v~nl~~~~~~~rf~D~G~v~-- 389 (514)
T KOG2055|consen 326 HIHLLHAKTKELITSF----------KIEGVVSDFTFSSDSKELLASGGTG----EVYVWNLRQNSCLHRFVDDGSVH-- 389 (514)
T ss_pred eEEeehhhhhhhhhee----------eeccEEeeEEEecCCcEEEEEcCCc----eEEEEecCCcceEEEEeecCccc--
Confidence 5777777777542 12 2256788999999999776664332 69999998876654443332210
Q ss_pred ccCccccCCCCCccCCCc-EEEEEccCCccEEEEEe--CCCceeecccccC---eEEEEEEeEeecCCEEEEEEcCCCCc
Q 008873 139 LHDCFTPLDKGVTKYSGG-FIWASEKTGFRHLYLHD--INGTCLGPITEGD---WMVEQIVGVNEASGQVYFTGTLDGPL 212 (550)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~-~~~~s~~~g~~~l~~~~--~~~~~~~~lT~~~---~~~~~~~~~s~dg~~l~f~~~~~~~~ 212 (550)
+..+. .+.++ ++.+-...|.-+||-.+ ..++.+++++.-+ ..+... .+++|++.|++.++....
T Consensus 390 -gts~~-------~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl-~Fn~d~qiLAiaS~~~kn- 459 (514)
T KOG2055|consen 390 -GTSLC-------ISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSL-QFNHDAQILAIASRVKKN- 459 (514)
T ss_pred -eeeee-------ecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeee-eeCcchhhhhhhhhcccc-
Confidence 11111 12333 44444456888888765 2345566655421 123333 589999888887775321
Q ss_pred eeEEEEEEeCC-CCCCCCCCCeeeCCCCceEEEEECCCCCEEEEe
Q 008873 213 ESHLYCAKLYP-DWNHTLEAPVKLTNGKGKHVAVLDHNMRNFVDF 256 (550)
Q Consensus 213 ~~~l~~v~~~~-~g~~~~~~~~~lt~~~~~~~~~~s~dg~~l~~~ 256 (550)
...|..++-.. -.+ =|+.-+.-.....++|||.|.++++-
T Consensus 460 alrLVHvPS~TVFsN----fP~~n~~vg~vtc~aFSP~sG~lAvG 500 (514)
T KOG2055|consen 460 ALRLVHVPSCTVFSN----FPTSNTKVGHVTCMAFSPNSGYLAVG 500 (514)
T ss_pred ceEEEeccceeeecc----CCCCCCcccceEEEEecCCCceEEee
Confidence 13333332100 111 01121111235667999999887654
No 239
>PF00975 Thioesterase: Thioesterase domain; InterPro: IPR001031 Thioesterase domains often occur integrated in or associated with peptide synthetases which are involved in the non-ribosomal synthesis of peptide antibiotics []. Thioesterases are required for the addition of the last amino acid to the peptide antibiotic, thereby forming a cyclic antibiotic. Next to the operons encoding these enzymes, in almost all cases, are genes that encode proteins that have similarity to the type II fatty acid thioesterases of vertebrates.; GO: 0016788 hydrolase activity, acting on ester bonds, 0009058 biosynthetic process; PDB: 2RON_A 2K2Q_B 3LCR_B 2HFJ_B 1MNQ_A 1MN6_B 1MNA_B 2HFK_B 2H7Y_B 2H7X_A ....
Probab=97.41 E-value=0.00041 Score=63.78 Aligned_cols=97 Identities=18% Similarity=0.109 Sum_probs=58.9
Q ss_pred EEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCchhhHHHHhhccCCCchHHHHH-HHHHHHHcCC
Q 008873 330 TLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLT-GAEWLIKQGL 408 (550)
Q Consensus 330 ~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~~~~~~~~~~~~~~~~~D~~~-~~~~l~~~~~ 408 (550)
.|+++|++.++.. .|..+++.|...++.|+.+.++|.+...... ..++++.+ .++.+.+..
T Consensus 2 ~lf~~p~~gG~~~-------~y~~la~~l~~~~~~v~~i~~~~~~~~~~~~----------~si~~la~~y~~~I~~~~- 63 (229)
T PF00975_consen 2 PLFCFPPAGGSAS-------SYRPLARALPDDVIGVYGIEYPGRGDDEPPP----------DSIEELASRYAEAIRARQ- 63 (229)
T ss_dssp EEEEESSTTCSGG-------GGHHHHHHHTTTEEEEEEECSTTSCTTSHEE----------SSHHHHHHHHHHHHHHHT-
T ss_pred eEEEEcCCccCHH-------HHHHHHHhCCCCeEEEEEEecCCCCCCCCCC----------CCHHHHHHHHHHHhhhhC-
Confidence 4678899877643 3444566666557999999999876222111 11233222 233333322
Q ss_pred CCCCceEEEEechhHHHHHHHHhh---CCCeeEEEEEcCC
Q 008873 409 AKVGHIGLYGWSYGGYLSAITLAR---FPDVFQCAVSGAP 445 (550)
Q Consensus 409 ~d~~~i~i~G~S~GG~~a~~~~~~---~~~~~~~~v~~~~ 445 (550)
...++.|+|||+||.+|.-+|.+ ....+..+++..+
T Consensus 64 -~~gp~~L~G~S~Gg~lA~E~A~~Le~~G~~v~~l~liD~ 102 (229)
T PF00975_consen 64 -PEGPYVLAGWSFGGILAFEMARQLEEAGEEVSRLILIDS 102 (229)
T ss_dssp -SSSSEEEEEETHHHHHHHHHHHHHHHTT-SESEEEEESC
T ss_pred -CCCCeeehccCccHHHHHHHHHHHHHhhhccCceEEecC
Confidence 22389999999999999988864 2333556666553
No 240
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.40 E-value=0.061 Score=51.18 Aligned_cols=50 Identities=16% Similarity=0.246 Sum_probs=35.3
Q ss_pred cEEEEEeCCCceeecccccCeEEEEEEeEeecCCEEEEEEcCCCCceeEEEEEEe
Q 008873 167 RHLYLHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKL 221 (550)
Q Consensus 167 ~~l~~~~~~~~~~~~lT~~~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~~v~~ 221 (550)
..||++++.++..+.++. ...+..-..||||++.+|++-+.. ..|+++++
T Consensus 143 G~lyr~~p~g~~~~l~~~-~~~~~NGla~SpDg~tly~aDT~~----~~i~r~~~ 192 (307)
T COG3386 143 GSLYRVDPDGGVVRLLDD-DLTIPNGLAFSPDGKTLYVADTPA----NRIHRYDL 192 (307)
T ss_pred ceEEEEcCCCCEEEeecC-cEEecCceEECCCCCEEEEEeCCC----CeEEEEec
Confidence 489999987666665554 344433345999999999986653 46788777
No 241
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=97.39 E-value=0.08 Score=51.66 Aligned_cols=185 Identities=11% Similarity=0.115 Sum_probs=87.3
Q ss_pred EEEEEECCC-CceEEEEcccCCCCCCCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCceee
Q 008873 60 RLGVVSAAG-GPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVN 138 (550)
Q Consensus 60 ~l~~~d~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~ 138 (550)
.|.++++++ ++.+.+..- ........+++||||+.++..... ...-.+|.++ ++|+.+.+.......
T Consensus 13 ~I~~~~~~~~g~l~~~~~~-------~~~~~~~~l~~spd~~~lyv~~~~-~~~i~~~~~~-~~g~l~~~~~~~~~~--- 80 (330)
T PRK11028 13 QIHVWNLNHEGALTLLQVV-------DVPGQVQPMVISPDKRHLYVGVRP-EFRVLSYRIA-DDGALTFAAESPLPG--- 80 (330)
T ss_pred CEEEEEECCCCceeeeeEE-------ecCCCCccEEECCCCCEEEEEECC-CCcEEEEEEC-CCCceEEeeeecCCC---
Confidence 356777753 554433221 111223446899999977655432 2222334444 355544333221110
Q ss_pred ccCccccCCCCCccCCCc-EEEEEccCCccEEEEEeCC--Cceeecc--cccCeEEEEEEeEeecCCEEEEEEcCCCCce
Q 008873 139 LHDCFTPLDKGVTKYSGG-FIWASEKTGFRHLYLHDIN--GTCLGPI--TEGDWMVEQIVGVNEASGQVYFTGTLDGPLE 213 (550)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~-~~~~s~~~g~~~l~~~~~~--~~~~~~l--T~~~~~~~~~~~~s~dg~~l~f~~~~~~~~~ 213 (550)
.+. .+ ..++++ ++|.+... ...|.+++.+ +...+.+ ..+....... .++|+|+.+|+.....+
T Consensus 81 -~p~--~i----~~~~~g~~l~v~~~~-~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~-~~~p~g~~l~v~~~~~~--- 148 (330)
T PRK11028 81 -SPT--HI----STDHQGRFLFSASYN-ANCVSVSPLDKDGIPVAPIQIIEGLEGCHSA-NIDPDNRTLWVPCLKED--- 148 (330)
T ss_pred -Cce--EE----EECCCCCEEEEEEcC-CCeEEEEEECCCCCCCCceeeccCCCcccEe-EeCCCCCEEEEeeCCCC---
Confidence 010 00 124444 66665432 2455555543 2111111 1121122233 38999998887665443
Q ss_pred eEEEEEEeCCCCCCCC--CCCeeeCCCCceEEEEECCCCCEEEEeecCCCCCCEEEEEEcC
Q 008873 214 SHLYCAKLYPDWNHTL--EAPVKLTNGKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQ 272 (550)
Q Consensus 214 ~~l~~v~~~~~g~~~~--~~~~~lt~~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~ 272 (550)
.|+.+++...+.... .....+..+.+-..+.|+|||++++.+.... ..+.++++.
T Consensus 149 -~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~---~~v~v~~~~ 205 (330)
T PRK11028 149 -RIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELN---SSVDVWQLK 205 (330)
T ss_pred -EEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCC---CEEEEEEEe
Confidence 455556532232100 0111223334456678999999876554322 367776664
No 242
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=97.39 E-value=0.087 Score=49.44 Aligned_cols=176 Identities=16% Similarity=0.183 Sum_probs=92.8
Q ss_pred eeEEEEECCCCeEEEEEEec-CCCceEEEEEECCCCceEEEEEeecCceeeccCccccCCCCCccCCCc-EEEEEcc-CC
Q 008873 89 YLARVNWMHGNILTAQVLNR-SQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYSGG-FIWASEK-TG 165 (550)
Q Consensus 89 ~~~~~~wspDg~~i~~~~~r-~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~-~g 165 (550)
..+.+.|+|+++.++.+... .+..-.-|.+|.+.|+...|-.....+- .+.+. +.+.++ ++|.++- .|
T Consensus 41 nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~---~p~yv------svd~~g~~vf~AnY~~g 111 (346)
T COG2706 41 NPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGS---PPCYV------SVDEDGRFVFVANYHSG 111 (346)
T ss_pred CCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCC---CCeEE------EECCCCCEEEEEEccCc
Confidence 33457899999987766433 2344567888888898777655432210 00111 224444 7776653 44
Q ss_pred ccEEEEEeCCCceeecc------ccc-C------eEEEEEEeEeecCCEEEEEEcCCCCceeEEEEEEeCCCCCCCCCCC
Q 008873 166 FRHLYLHDINGTCLGPI------TEG-D------WMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAP 232 (550)
Q Consensus 166 ~~~l~~~~~~~~~~~~l------T~~-~------~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~~v~~~~~g~~~~~~~ 232 (550)
.-.++-+..+|. +..+ +.+ . -++. ...++|+++.|+...-..+ +..+| ++. +|......+
T Consensus 112 ~v~v~p~~~dG~-l~~~v~~~~h~g~~p~~rQ~~~h~H-~a~~tP~~~~l~v~DLG~D--ri~~y--~~~-dg~L~~~~~ 184 (346)
T COG2706 112 SVSVYPLQADGS-LQPVVQVVKHTGSGPHERQESPHVH-SANFTPDGRYLVVPDLGTD--RIFLY--DLD-DGKLTPADP 184 (346)
T ss_pred eEEEEEcccCCc-cccceeeeecCCCCCCccccCCccc-eeeeCCCCCEEEEeecCCc--eEEEE--Ecc-cCccccccc
Confidence 444455444432 1111 111 0 0122 2358899987776654433 24455 543 454333345
Q ss_pred eeeCCCCceEEEEECCCCCEEEEeecCCCCCCEEEEEEcCCCceeEeccC
Q 008873 233 VKLTNGKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLYE 282 (550)
Q Consensus 233 ~~lt~~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~~~~~l~~ 282 (550)
..+..+.|--.+.|.|++++...+ ..-+.--.++-++...|+ ...|..
T Consensus 185 ~~v~~G~GPRHi~FHpn~k~aY~v-~EL~stV~v~~y~~~~g~-~~~lQ~ 232 (346)
T COG2706 185 AEVKPGAGPRHIVFHPNGKYAYLV-NELNSTVDVLEYNPAVGK-FEELQT 232 (346)
T ss_pred cccCCCCCcceEEEcCCCcEEEEE-eccCCEEEEEEEcCCCce-EEEeee
Confidence 555556666677999999865444 433332345555543344 444433
No 243
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.37 E-value=0.0088 Score=56.82 Aligned_cols=147 Identities=18% Similarity=0.194 Sum_probs=76.8
Q ss_pred CeEEEEEEECCCCceEEEEcccCCCCCCCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCC--CceEEEEEeecC
Q 008873 57 VKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKT--GQRKVILVEELD 134 (550)
Q Consensus 57 ~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~--g~~~~l~~~~~~ 134 (550)
+...||.+|..++..+.+. +.-..-..++|||||+.+++..... ..|+.++.+. |.... ..
T Consensus 141 ~~G~lyr~~p~g~~~~l~~---------~~~~~~NGla~SpDg~tly~aDT~~---~~i~r~~~d~~~g~~~~-----~~ 203 (307)
T COG3386 141 PTGSLYRVDPDGGVVRLLD---------DDLTIPNGLAFSPDGKTLYVADTPA---NRIHRYDLDPATGPIGG-----RR 203 (307)
T ss_pred CcceEEEEcCCCCEEEeec---------CcEEecCceEECCCCCEEEEEeCCC---CeEEEEecCcccCccCC-----cc
Confidence 3347999998655554431 1011234579999999887764332 3577776652 22100 00
Q ss_pred ceeeccCccccCCCCCccCCCcEEEEEccCCccEEEEEeCCCceeecccccCeEEEEEEeEeecCCEEEEEEcCCC----
Q 008873 135 SWVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGTLDG---- 210 (550)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~~~~~~~lT~~~~~~~~~~~~s~dg~~l~f~~~~~~---- 210 (550)
.+.... .....+.....+.++.+|.+-..+-..|-+++++|.....+.-....+..+..-.++.+.||+++...+
T Consensus 204 ~~~~~~-~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pdG~l~~~i~lP~~~~t~~~FgG~~~~~L~iTs~~~~~~~~ 282 (307)
T COG3386 204 GFVDFD-EEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPDGKLLGEIKLPVKRPTNPAFGGPDLNTLYITSARSGMSRM 282 (307)
T ss_pred eEEEcc-CCCCCCCceEEeCCCCEEEecccCCceEEEECCCCcEEEEEECCCCCCccceEeCCCcCEEEEEecCCCCCcc
Confidence 011100 000111111234455566433322246888888876655555442334445545678899999988652
Q ss_pred ----CceeEEEEEEe
Q 008873 211 ----PLESHLYCAKL 221 (550)
Q Consensus 211 ----~~~~~l~~v~~ 221 (550)
+..-.||.+.+
T Consensus 283 ~~~~~~~G~lf~~~~ 297 (307)
T COG3386 283 LTADPLGGGLFSLRL 297 (307)
T ss_pred ccccccCceEEEEec
Confidence 22234666665
No 244
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=97.37 E-value=0.00044 Score=43.13 Aligned_cols=31 Identities=10% Similarity=0.072 Sum_probs=23.3
Q ss_pred CceeEEEEECCCCeEEEEEEecC-CCceEEEE
Q 008873 87 EEYLARVNWMHGNILTAQVLNRS-QTKLKVLK 117 (550)
Q Consensus 87 ~~~~~~~~wspDg~~i~~~~~r~-~~~~~l~~ 117 (550)
......|.|||||+.|+|++++. .+..+||+
T Consensus 8 ~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy~ 39 (39)
T PF07676_consen 8 PGDDGSPAWSPDGKYIYFTSNRNDRGSFDIYV 39 (39)
T ss_dssp SSSEEEEEE-TTSSEEEEEEECT--SSEEEEE
T ss_pred CccccCEEEecCCCEEEEEecCCCCCCcCEEC
Confidence 45677899999999999999887 34567774
No 245
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=97.37 E-value=0.057 Score=50.20 Aligned_cols=166 Identities=13% Similarity=0.010 Sum_probs=87.5
Q ss_pred ceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCceeeccCccccCCCCCccCCCcEEEEEccCCc-
Q 008873 88 EYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYSGGFIWASEKTGF- 166 (550)
Q Consensus 88 ~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~- 166 (550)
....++++|+||+.++++. .......||.....+.....+ .. .. .-.| +|++++.+|..++...
T Consensus 24 ~~~~s~AvS~dg~~~A~v~-~~~~~~~L~~~~~~~~~~~~~-~g--~~------l~~P-----S~d~~g~~W~v~~~~~~ 88 (253)
T PF10647_consen 24 YDVTSPAVSPDGSRVAAVS-EGDGGRSLYVGPAGGPVRPVL-TG--GS------LTRP-----SWDPDGWVWTVDDGSGG 88 (253)
T ss_pred ccccceEECCCCCeEEEEE-EcCCCCEEEEEcCCCcceeec-cC--Cc------cccc-----cccCCCCEEEEEcCCCc
Confidence 3677899999999998887 333445688887654433333 11 10 1112 5777777776655332
Q ss_pred cEEEEEeCCCc-eeecccccCe--EEEEEEeEeecCCEEEEEEcCCCCceeEEEEEEeCCCC-CCCCCCCeeeCCC--Cc
Q 008873 167 RHLYLHDINGT-CLGPITEGDW--MVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDW-NHTLEAPVKLTNG--KG 240 (550)
Q Consensus 167 ~~l~~~~~~~~-~~~~lT~~~~--~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~~v~~~~~g-~~~~~~~~~lt~~--~~ 240 (550)
..+++...++. ....+.-... .+..+. +|+||.++++.....+.....+..|.-..+| ......+.++... ..
T Consensus 89 ~~~~~~~~~g~~~~~~v~~~~~~~~I~~l~-vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~ 167 (253)
T PF10647_consen 89 VRVVRDSASGTGEPVEVDWPGLRGRITALR-VSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSD 167 (253)
T ss_pred eEEEEecCCCcceeEEecccccCCceEEEE-ECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCc
Confidence 23333222222 1222222111 456665 9999999999987655433444444432223 1112233344322 23
Q ss_pred eEEEEECCCCCEEEEeecCCCCCCEEEEEEc
Q 008873 241 KHVAVLDHNMRNFVDFHDSLDSPPRILLCSL 271 (550)
Q Consensus 241 ~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~ 271 (550)
...+.|++++..++.. .....+... .+..
T Consensus 168 v~~v~W~~~~~L~V~~-~~~~~~~~~-~v~~ 196 (253)
T PF10647_consen 168 VTDVAWSDDSTLVVLG-RSAGGPVVR-LVSV 196 (253)
T ss_pred ceeeeecCCCEEEEEe-CCCCCceeE-EEEc
Confidence 5567899988655544 444443333 4444
No 246
>PF05990 DUF900: Alpha/beta hydrolase of unknown function (DUF900); InterPro: IPR010297 This domain is associated with proteins of unknown function, which are hydrolase-like.
Probab=97.35 E-value=0.00088 Score=61.24 Aligned_cols=140 Identities=14% Similarity=0.092 Sum_probs=77.8
Q ss_pred CceEEEEEcCCCCceeecccccccchhHhHHHHhCCc--EEEEECCCCCCCCchhhHHHHhhccCCCchHHHHHHHHHHH
Q 008873 327 PYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGI--LVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLI 404 (550)
Q Consensus 327 ~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~--~vv~~d~rG~g~~~~~~~~~~~~~~~~~~~~D~~~~~~~l~ 404 (550)
+..++||+||..... .......++.....|+ .++.+.++..|.. ..+.... ........++...+..|.
T Consensus 17 ~~~vlvfVHGyn~~f------~~a~~r~aql~~~~~~~~~~i~FsWPS~g~~-~~Y~~d~--~~a~~s~~~l~~~L~~L~ 87 (233)
T PF05990_consen 17 DKEVLVFVHGYNNSF------EDALRRAAQLAHDLGFPGVVILFSWPSDGSL-LGYFYDR--ESARFSGPALARFLRDLA 87 (233)
T ss_pred CCeEEEEEeCCCCCH------HHHHHHHHHHHHHhCCCceEEEEEcCCCCCh-hhhhhhh--hhHHHHHHHHHHHHHHHH
Confidence 457999999954431 1111223444444444 7899998876542 1111111 011112445556666665
Q ss_pred HcCCCCCCceEEEEechhHHHHHHHHhhC----C-----CeeEEEEEcCCcCCcccccchhhhhccCCCCCCccccccCC
Q 008873 405 KQGLAKVGHIGLYGWSYGGYLSAITLARF----P-----DVFQCAVSGAPVTSWDGYDTFYTEKYMGLPSEDPVGYEYSS 475 (550)
Q Consensus 405 ~~~~~d~~~i~i~G~S~GG~~a~~~~~~~----~-----~~~~~~v~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 475 (550)
+.. ...+|.|++||||+.+.+.++... . .+|..++..+|-.+...+....
T Consensus 88 ~~~--~~~~I~ilaHSMG~rv~~~aL~~l~~~~~~~~~~~~~~~viL~ApDid~d~f~~~~------------------- 146 (233)
T PF05990_consen 88 RAP--GIKRIHILAHSMGNRVLLEALRQLASEGERPDVKARFDNVILAAPDIDNDVFRSQL------------------- 146 (233)
T ss_pred hcc--CCceEEEEEeCchHHHHHHHHHHHHhcccchhhHhhhheEEEECCCCCHHHHHHHH-------------------
Confidence 552 457999999999999998876541 1 2456666666654432211111
Q ss_pred hhhhhhcCCCcEEEEecCCCCCC
Q 008873 476 VMHHVHKMKGKLLLVHGMIDENV 498 (550)
Q Consensus 476 ~~~~~~~i~~P~lii~G~~D~~v 498 (550)
..+.+...++.+.+..+|...
T Consensus 147 --~~~~~~~~~itvy~s~~D~AL 167 (233)
T PF05990_consen 147 --PDLGSSARRITVYYSRNDRAL 167 (233)
T ss_pred --HHHhhcCCCEEEEEcCCchHH
Confidence 123334467788888887543
No 247
>KOG3975 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.35 E-value=0.0096 Score=52.83 Aligned_cols=116 Identities=20% Similarity=0.227 Sum_probs=63.2
Q ss_pred CcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHH-hCC--cEEEEECCCCCCCCchhhHHHH
Q 008873 308 GTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLR-SKG--ILVWKLDNRGTARRGLKFEASI 384 (550)
Q Consensus 308 g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~-~~G--~~vv~~d~rG~g~~~~~~~~~~ 384 (550)
|..+....+.|--.... ...|+++++.|.|+...+... ++..|. ..+ ..++.+-.-|+-.-.....+..
T Consensus 10 gl~~si~~~~~~v~~~~-~~~~li~~IpGNPG~~gFY~~-------F~~~L~~~l~~r~~~wtIsh~~H~~~P~sl~~~~ 81 (301)
T KOG3975|consen 10 GLPTSILTLKPWVTKSG-EDKPLIVWIPGNPGLLGFYTE-------FARHLHLNLIDRLPVWTISHAGHALMPASLREDH 81 (301)
T ss_pred CCcccceeeeeeeccCC-CCceEEEEecCCCCchhHHHH-------HHHHHHHhcccccceeEEeccccccCCccccccc
Confidence 33344444444332222 467999999999987553222 233332 222 4466666665543221111111
Q ss_pred hh-ccCCCchHHHHHH-HHHHHHcCCCCCCceEEEEechhHHHHHHHHhh
Q 008873 385 KH-NCGRIDAEDQLTG-AEWLIKQGLAKVGHIGLYGWSYGGYLSAITLAR 432 (550)
Q Consensus 385 ~~-~~~~~~~~D~~~~-~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~ 432 (550)
.. +-....++|++.- ++++.+. --...+|.|+|||-|+|+++.++-.
T Consensus 82 s~~~~eifsL~~QV~HKlaFik~~-~Pk~~ki~iiGHSiGaYm~Lqil~~ 130 (301)
T KOG3975|consen 82 SHTNEEIFSLQDQVDHKLAFIKEY-VPKDRKIYIIGHSIGAYMVLQILPS 130 (301)
T ss_pred ccccccccchhhHHHHHHHHHHHh-CCCCCEEEEEecchhHHHHHHHhhh
Confidence 11 1122345666554 4444443 2245789999999999999999874
No 248
>COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]
Probab=97.33 E-value=0.011 Score=62.88 Aligned_cols=208 Identities=17% Similarity=0.137 Sum_probs=114.1
Q ss_pred ccceEEEcCCCCeEEEEEEeCCCCCeEEEeecCCCCCCCCCcccccCCCCCCCCCeEEEEEEECCCCceEEEEcccCCCC
Q 008873 3 RKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQCGGTD 82 (550)
Q Consensus 3 ~~~~~~wSPdg~~lay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~ 82 (550)
+......+|+|+.++|+...-+... ...+..+|+.|..+ ...+
T Consensus 14 ~~~~~~~~~~~~~~~~i~~~~~~~~---------------------------~~~~~~~~~~d~~~--~~~~-------- 56 (620)
T COG1506 14 RVSDPRVSPPGGRLAYILTGLDFLK---------------------------PLYKSSLWVSDGKT--VRLL-------- 56 (620)
T ss_pred cccCcccCCCCceeEEeeccccccc---------------------------cccccceEEEeccc--cccc--------
Confidence 3455667899999999876411100 01124577766665 2222
Q ss_pred CCCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEe--ecCceeeccCccccCCCC-CccCCC----
Q 008873 83 QNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVE--ELDSWVNLHDCFTPLDKG-VTKYSG---- 155 (550)
Q Consensus 83 ~~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~--~~~~~~~~~~~~~~~~~~-~~~~~~---- 155 (550)
........+.|||||+.+++..+......++|+++.+ | ....+.. ....|.+....+...... ..+..+
T Consensus 57 --~~~~~~~~~~~spdg~~~~~~~~~~~~~~~l~l~~~~-g-~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 132 (620)
T COG1506 57 --TFGGGVSELRWSPDGSVLAFVSTDGGRVAQLYLVDVG-G-LITKTAFGVSDARWSPDGDRIAFLTAEGASKRDGGDHL 132 (620)
T ss_pred --ccCCcccccccCCCCCEEEEEeccCCCcceEEEEecC-C-ceeeeecccccceeCCCCCeEEEEecccccccCCceee
Confidence 2244567789999999999988565556789999988 4 1111111 222455444333321000 001111
Q ss_pred ---cE-EEEEccC-CccEEEEEeCCCceeecccccCeEEEEEEeEeecCCEEEEEEcCC--CCceeEEEEEEeCCCCCCC
Q 008873 156 ---GF-IWASEKT-GFRHLYLHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGTLD--GPLESHLYCAKLYPDWNHT 228 (550)
Q Consensus 156 ---~~-~~~s~~~-g~~~l~~~~~~~~~~~~lT~~~~~~~~~~~~s~dg~~l~f~~~~~--~~~~~~l~~v~~~~~g~~~ 228 (550)
.+ ++...++ ...++|+++.++ ....++.++..+..+. ++.+++.++...... .+.....+.... .++
T Consensus 133 ~~~~~~~~~~~~g~~~~~l~~~d~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--- 206 (620)
T COG1506 133 FVDRLPVWFDGRGGERSDLYVVDIES-KLIKLGLGNLDVVSFA-TDGDGRLVASIRLDDDADPWVTNLYVLIE-GNG--- 206 (620)
T ss_pred eecccceeecCCCCcccceEEEccCc-ccccccCCCCceeeee-eCCCCceeEEeeeccccCCceEeeEEEec-CCC---
Confidence 12 2233333 478999999876 5566666666655543 555566555555433 233333333322 122
Q ss_pred CCCCeeeCCCCc-eEEEEECCCCCEEEEeecC
Q 008873 229 LEAPVKLTNGKG-KHVAVLDHNMRNFVDFHDS 259 (550)
Q Consensus 229 ~~~~~~lt~~~~-~~~~~~s~dg~~l~~~~s~ 259 (550)
.+..++...+ .....+.++|+.+.+....
T Consensus 207 --~~~~~~~~~~~~~~~~~~~~gk~~~~~~~~ 236 (620)
T COG1506 207 --ELESLTPGEGSISKLAFDADGKSIALLGTE 236 (620)
T ss_pred --ceEEEcCCCceeeeeeeCCCCCeeEEeccC
Confidence 4566666544 4555788999977666543
No 249
>PF07082 DUF1350: Protein of unknown function (DUF1350); InterPro: IPR010765 This family consists of several hypothetical proteins from both cyanobacteria and plants. Members of this family are typically around 250 residues in length. The function of this family is unknown but the species distribution indicates that the family may be involved in photosynthesis.
Probab=97.31 E-value=0.005 Score=55.23 Aligned_cols=185 Identities=17% Similarity=0.078 Sum_probs=98.6
Q ss_pred EEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCchhhHHHHhhccCCCc
Q 008873 313 GALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRID 392 (550)
Q Consensus 313 ~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~~~~~~~~~~~~~~~ 392 (550)
.|+..|+. +. .||.+-||........ ..+..+.+.|+++||.|++.-|.-+= + +..+....
T Consensus 8 ~wvl~P~~------P~-gvihFiGGaf~ga~P~---itYr~lLe~La~~Gy~ViAtPy~~tf----D-H~~~A~~~---- 68 (250)
T PF07082_consen 8 SWVLIPPR------PK-GVIHFIGGAFVGAAPQ---ITYRYLLERLADRGYAVIATPYVVTF----D-HQAIAREV---- 68 (250)
T ss_pred cEEEeCCC------CC-EEEEEcCcceeccCcH---HHHHHHHHHHHhCCcEEEEEecCCCC----c-HHHHHHHH----
Confidence 36666753 23 4555556544332211 23555778899999999999986321 1 12222221
Q ss_pred hHHHHHHHHHHHHcCCCCCC--ceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCccccc---------chhhhhcc
Q 008873 393 AEDQLTGAEWLIKQGLAKVG--HIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYD---------TFYTEKYM 461 (550)
Q Consensus 393 ~~D~~~~~~~l~~~~~~d~~--~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~~~~---------~~~~~~~~ 461 (550)
.+.+..+++.|.++..++.. ++.-+|||+|+-+-+.+...++..-++.++++ +-+..... ......+.
T Consensus 69 ~~~f~~~~~~L~~~~~~~~~~lP~~~vGHSlGcklhlLi~s~~~~~r~gniliS-FNN~~a~~aIP~~~~l~~~l~~EF~ 147 (250)
T PF07082_consen 69 WERFERCLRALQKRGGLDPAYLPVYGVGHSLGCKLHLLIGSLFDVERAGNILIS-FNNFPADEAIPLLEQLAPALRLEFT 147 (250)
T ss_pred HHHHHHHHHHHHHhcCCCcccCCeeeeecccchHHHHHHhhhccCcccceEEEe-cCChHHHhhCchHhhhccccccCcc
Confidence 34456677777766443433 67779999999999988876543323333322 11110000 00001111
Q ss_pred CCCCCCccccccCChhhhhhcCCCcEEEEecCCCCCCChHHHHHHHHHHHHcCC-CeEEEEcCCCCCc
Q 008873 462 GLPSEDPVGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARK-PYEILIFPDERHM 528 (550)
Q Consensus 462 g~~~~~~~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~-~~~~~~~p~~~H~ 528 (550)
..|.+....... .-.....|+|.-.+|.. .++..+.+.|+.+.. .++....|| +|-
T Consensus 148 PsP~ET~~li~~-------~Y~~~rnLLIkF~~D~i---Dqt~~L~~~L~~r~~~~~~~~~L~G-~HL 204 (250)
T PF07082_consen 148 PSPEETRRLIRE-------SYQVRRNLLIKFNDDDI---DQTDELEQILQQRFPDMVSIQTLPG-NHL 204 (250)
T ss_pred CCHHHHHHHHHH-------hcCCccceEEEecCCCc---cchHHHHHHHhhhccccceEEeCCC-CCC
Confidence 112221111110 00123567888888865 588888888877643 356667775 785
No 250
>PTZ00420 coronin; Provisional
Probab=97.30 E-value=0.032 Score=57.72 Aligned_cols=54 Identities=7% Similarity=0.094 Sum_probs=36.2
Q ss_pred EEEEEECCCCceEEEEcccCCCCCCCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceE
Q 008873 60 RLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRK 126 (550)
Q Consensus 60 ~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~ 126 (550)
.|.+||+.+++... .+. ....+.+++|+|||++++...... .|.+.|+.+++..
T Consensus 149 tIrIWDl~tg~~~~-~i~--------~~~~V~SlswspdG~lLat~s~D~----~IrIwD~Rsg~~i 202 (568)
T PTZ00420 149 FVNIWDIENEKRAF-QIN--------MPKKLSSLKWNIKGNLLSGTCVGK----HMHIIDPRKQEIA 202 (568)
T ss_pred eEEEEECCCCcEEE-EEe--------cCCcEEEEEECCCCCEEEEEecCC----EEEEEECCCCcEE
Confidence 36789999876432 221 123578899999999887654322 3777888888753
No 251
>PTZ00420 coronin; Provisional
Probab=97.28 E-value=0.24 Score=51.42 Aligned_cols=117 Identities=14% Similarity=0.094 Sum_probs=58.0
Q ss_pred CceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCceeeccCccccCCCCCccCCCc-EEEEEccCC
Q 008873 87 EEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYSGG-FIWASEKTG 165 (550)
Q Consensus 87 ~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~g 165 (550)
...+..++|+|++..++.....+. .|.+.|+.+++.......... +..+ .|++++ ++..+..++
T Consensus 125 ~~~V~sVaf~P~g~~iLaSgS~Dg---tIrIWDl~tg~~~~~i~~~~~--------V~Sl----swspdG~lLat~s~D~ 189 (568)
T PTZ00420 125 KKKISIIDWNPMNYYIMCSSGFDS---FVNIWDIENEKRAFQINMPKK--------LSSL----KWNIKGNLLSGTCVGK 189 (568)
T ss_pred CCcEEEEEECCCCCeEEEEEeCCC---eEEEEECCCCcEEEEEecCCc--------EEEE----EECCCCCEEEEEecCC
Confidence 356788999999986544433322 366667777764322211111 0011 345555 444443333
Q ss_pred ccEEEEEeCCCceee-cccccCeEEEE----EEeEeecCCEEEEEEcCCCCceeEEEEEEe
Q 008873 166 FRHLYLHDINGTCLG-PITEGDWMVEQ----IVGVNEASGQVYFTGTLDGPLESHLYCAKL 221 (550)
Q Consensus 166 ~~~l~~~~~~~~~~~-~lT~~~~~~~~----~~~~s~dg~~l~f~~~~~~~~~~~l~~v~~ 221 (550)
.|.++|+.+++.. .+..+...+.. ...++++++.|+-++..+. ..+.|...++
T Consensus 190 --~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~-~~R~VkLWDl 247 (568)
T PTZ00420 190 --HMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKN-NMREMKLWDL 247 (568)
T ss_pred --EEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCC-CccEEEEEEC
Confidence 5777787665432 23222211111 1224578777766655432 1244555565
No 252
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=97.24 E-value=0.14 Score=48.52 Aligned_cols=116 Identities=14% Similarity=0.236 Sum_probs=66.2
Q ss_pred CcEEEEEccCCccEEEEEeCCCcee------ecccc----cCeEEE--EEEeEeecCCEEEEEEcC------CCCceeEE
Q 008873 155 GGFIWASEKTGFRHLYLHDINGTCL------GPITE----GDWMVE--QIVGVNEASGQVYFTGTL------DGPLESHL 216 (550)
Q Consensus 155 ~~~~~~s~~~g~~~l~~~~~~~~~~------~~lT~----~~~~~~--~~~~~s~dg~~l~f~~~~------~~~~~~~l 216 (550)
+.++|.|-. ..+|..++.+... ..+|. ..|... +...+.+..++||+.... +. ....|
T Consensus 196 ~~~~F~Sy~---G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKd-pgteV 271 (342)
T PF06433_consen 196 GRLYFVSYE---GNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKD-PGTEV 271 (342)
T ss_dssp TEEEEEBTT---SEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS--EEEE
T ss_pred CeEEEEecC---CEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccC-CceEE
Confidence 347777643 3678888766542 22332 245433 123467777889887652 22 24789
Q ss_pred EEEEeCCCCCCCCCCCeeeCCCCceEEEEECCCCCEEEEeecCCCCCCEEEEEEcCCCceeEecc
Q 008873 217 YCAKLYPDWNHTLEAPVKLTNGKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLY 281 (550)
Q Consensus 217 ~~v~~~~~g~~~~~~~~~lt~~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~~~~~l~ 281 (550)
|.+|+. .+. .+.++.-.....++.+|.|.+=+++..+.. -..|+++|..+|+.++.+.
T Consensus 272 Wv~D~~-t~k----rv~Ri~l~~~~~Si~Vsqd~~P~L~~~~~~--~~~l~v~D~~tGk~~~~~~ 329 (342)
T PF06433_consen 272 WVYDLK-THK----RVARIPLEHPIDSIAVSQDDKPLLYALSAG--DGTLDVYDAATGKLVRSIE 329 (342)
T ss_dssp EEEETT-TTE----EEEEEEEEEEESEEEEESSSS-EEEEEETT--TTEEEEEETTT--EEEEE-
T ss_pred EEEECC-CCe----EEEEEeCCCccceEEEccCCCcEEEEEcCC--CCeEEEEeCcCCcEEeehh
Confidence 999983 222 455555332244667788887666655442 2489999999998776654
No 253
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=97.23 E-value=0.18 Score=47.17 Aligned_cols=213 Identities=13% Similarity=0.039 Sum_probs=114.6
Q ss_pred CccceEEEcC-CCCeEEEEEEeCCCCCeEEEeecCCCCCCCCCcccccCCCCCCCCCeEEEEEEECCCCceEEEEcccCC
Q 008873 2 DRKTGYWWSL-DSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQCGG 80 (550)
Q Consensus 2 ~~~~~~~wSP-dg~~lay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~ 80 (550)
+|-.++..+| ++.-+||.|... .-+.++|..+++..+.-..
T Consensus 5 ~RgH~~a~~p~~~~avafaRRPG-----------------------------------~~~~v~D~~~g~~~~~~~a--- 46 (305)
T PF07433_consen 5 ARGHGVAAHPTRPEAVAFARRPG-----------------------------------TFALVFDCRTGQLLQRLWA--- 46 (305)
T ss_pred ccccceeeCCCCCeEEEEEeCCC-----------------------------------cEEEEEEcCCCceeeEEcC---
Confidence 4667888999 666677776542 2367899999987653221
Q ss_pred CCCCCCCceeEEEEECCCCeEEEEEEecC-CCceEEEEEECCCCceEEEEEeecCceeeccCccccCCCCCccCCCc-EE
Q 008873 81 TDQNYDEEYLARVNWMHGNILTAQVLNRS-QTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYSGG-FI 158 (550)
Q Consensus 81 ~~~~~~~~~~~~~~wspDg~~i~~~~~r~-~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 158 (550)
.+...+.....|||||++++..-++. .....|-+.|+. ..-+++-+.+..+- +|. .- .+.+|+ .+
T Consensus 47 ---~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~-~~~~ri~E~~s~GI---GPH----el--~l~pDG~tL 113 (305)
T PF07433_consen 47 ---PPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAA-RGYRRIGEFPSHGI---GPH----EL--LLMPDGETL 113 (305)
T ss_pred ---CCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECc-CCcEEEeEecCCCc---Chh----hE--EEcCCCCEE
Confidence 23445667889999999887765443 345678888887 34445444332221 111 00 123444 34
Q ss_pred EEEcc-------CC---------ccEEEEEeCCCce-eec--ccc--cCeEEEEEEeEeecCCEEEEEEcCCCC-ce-e-
Q 008873 159 WASEK-------TG---------FRHLYLHDINGTC-LGP--ITE--GDWMVEQIVGVNEASGQVYFTGTLDGP-LE-S- 214 (550)
Q Consensus 159 ~~s~~-------~g---------~~~l~~~~~~~~~-~~~--lT~--~~~~~~~~~~~s~dg~~l~f~~~~~~~-~~-~- 214 (550)
++.+. .| ...|-.+|..+|+ ..+ |.. ...++.- ..++.+|. ++|.....+. .. .
T Consensus 114 vVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRH-La~~~~G~-V~~a~Q~qg~~~~~~P 191 (305)
T PF07433_consen 114 VVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRH-LAVDGDGT-VAFAMQYQGDPGDAPP 191 (305)
T ss_pred EEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccceee-EEecCCCc-EEEEEecCCCCCccCC
Confidence 34321 12 2567777665554 334 322 2223333 34777774 4554443221 11 1
Q ss_pred EEEEEEeCCCCCCCCCCCeeeCCC-------Cc-eEEEEECCCCCEEEEeecCCCCCCEEEEEEcCCCcee
Q 008873 215 HLYCAKLYPDWNHTLEAPVKLTNG-------KG-KHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLV 277 (550)
Q Consensus 215 ~l~~v~~~~~g~~~~~~~~~lt~~-------~~-~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~~~ 277 (550)
-|+.... +. ..+.+... .+ ..+++++.+|..++.++-.. ..+.+.|..+|+.+
T Consensus 192 Lva~~~~---g~----~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrG---g~~~~~d~~tg~~~ 252 (305)
T PF07433_consen 192 LVALHRR---GG----ALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRG---GRVAVWDAATGRLL 252 (305)
T ss_pred eEEEEcC---CC----cceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCC---CEEEEEECCCCCEe
Confidence 2222222 21 12222211 12 56778999998877664332 36677788888743
No 254
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=97.22 E-value=0.17 Score=49.81 Aligned_cols=40 Identities=18% Similarity=0.174 Sum_probs=30.3
Q ss_pred CCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEE
Q 008873 85 YDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVI 128 (550)
Q Consensus 85 ~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l 128 (550)
+-...+..+++||||++++.+.... .+|++|-++|+..--
T Consensus 188 ~HskFV~~VRysPDG~~Fat~gsDg----ki~iyDGktge~vg~ 227 (603)
T KOG0318|consen 188 EHSKFVNCVRYSPDGSRFATAGSDG----KIYIYDGKTGEKVGE 227 (603)
T ss_pred ccccceeeEEECCCCCeEEEecCCc----cEEEEcCCCccEEEE
Confidence 3345788899999999887775443 399999999986543
No 255
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=97.18 E-value=0.014 Score=54.25 Aligned_cols=150 Identities=13% Similarity=0.073 Sum_probs=84.5
Q ss_pred EEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCceeeccCccccCCCCCccCCCcEEEEEccCCccEEEE
Q 008873 92 RVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYL 171 (550)
Q Consensus 92 ~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~ 171 (550)
.|.|.+....++++.-.. .+|+.++.++++.+.+.... + .+ ... ..+++-+++++..+ +.+
T Consensus 4 gp~~d~~~g~l~~~D~~~---~~i~~~~~~~~~~~~~~~~~-~----~G--~~~------~~~~g~l~v~~~~~---~~~ 64 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPG---GRIYRVDPDTGEVEVIDLPG-P----NG--MAF------DRPDGRLYVADSGG---IAV 64 (246)
T ss_dssp EEEEETTTTEEEEEETTT---TEEEEEETTTTEEEEEESSS-E----EE--EEE------ECTTSEEEEEETTC---EEE
T ss_pred ceEEECCCCEEEEEEcCC---CEEEEEECCCCeEEEEecCC-C----ce--EEE------EccCCEEEEEEcCc---eEE
Confidence 478998544454543222 36999999998766543221 1 00 000 11334555555544 345
Q ss_pred EeCCCceeeccccc-----C-eEEEEEEeEeecCCEEEEEEcCCCCc--e--eEEEEEEeCCCCCCCCCCCeeeCC-CCc
Q 008873 172 HDINGTCLGPITEG-----D-WMVEQIVGVNEASGQVYFTGTLDGPL--E--SHLYCAKLYPDWNHTLEAPVKLTN-GKG 240 (550)
Q Consensus 172 ~~~~~~~~~~lT~~-----~-~~~~~~~~~s~dg~~l~f~~~~~~~~--~--~~l~~v~~~~~g~~~~~~~~~lt~-~~~ 240 (550)
+|.++++.+.+... . ....+. .++++|+ |||+....... . -.||+++. ++ +.+.+.. ...
T Consensus 65 ~d~~~g~~~~~~~~~~~~~~~~~~ND~-~vd~~G~-ly~t~~~~~~~~~~~~g~v~~~~~--~~-----~~~~~~~~~~~ 135 (246)
T PF08450_consen 65 VDPDTGKVTVLADLPDGGVPFNRPNDV-AVDPDGN-LYVTDSGGGGASGIDPGSVYRIDP--DG-----KVTVVADGLGF 135 (246)
T ss_dssp EETTTTEEEEEEEEETTCSCTEEEEEE-EE-TTS--EEEEEECCBCTTCGGSEEEEEEET--TS-----EEEEEEEEESS
T ss_pred EecCCCcEEEEeeccCCCcccCCCceE-EEcCCCC-EEEEecCCCccccccccceEEECC--CC-----eEEEEecCccc
Confidence 58878776665542 2 223344 4889986 99887643211 1 57999997 43 2233322 123
Q ss_pred eEEEEECCCCCEEEEeecCCCCCCEEEEEEcC
Q 008873 241 KHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQ 272 (550)
Q Consensus 241 ~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~ 272 (550)
-..+.||||++.|+++-+.. ..|+++++.
T Consensus 136 pNGi~~s~dg~~lyv~ds~~---~~i~~~~~~ 164 (246)
T PF08450_consen 136 PNGIAFSPDGKTLYVADSFN---GRIWRFDLD 164 (246)
T ss_dssp EEEEEEETTSSEEEEEETTT---TEEEEEEEE
T ss_pred ccceEECCcchheeeccccc---ceeEEEecc
Confidence 45678999999886654432 368888875
No 256
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=97.15 E-value=0.015 Score=61.72 Aligned_cols=104 Identities=16% Similarity=0.099 Sum_probs=54.1
Q ss_pred CceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCceeeccCccccCCCCCccCCCcEEEEEcc-CC
Q 008873 87 EEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYSGGFIWASEK-TG 165 (550)
Q Consensus 87 ~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-~g 165 (550)
+..+..+.||||+++++...... .|.+.+..+.+...+++.... . ..+..|+|-+=++.+.. +.
T Consensus 129 ~~DV~Dv~Wsp~~~~lvS~s~Dn----sViiwn~~tF~~~~vl~~H~s----------~-VKGvs~DP~Gky~ASqsdDr 193 (942)
T KOG0973|consen 129 DSDVLDVNWSPDDSLLVSVSLDN----SVIIWNAKTFELLKVLRGHQS----------L-VKGVSWDPIGKYFASQSDDR 193 (942)
T ss_pred CCccceeccCCCccEEEEecccc----eEEEEccccceeeeeeecccc----------c-ccceEECCccCeeeeecCCc
Confidence 44567789999999888775443 367777777754433332110 0 11114555442223222 22
Q ss_pred ccEEEEEeCCCceeecccccC------eEEEEEEeEeecCCEEEEEEc
Q 008873 166 FRHLYLHDINGTCLGPITEGD------WMVEQIVGVNEASGQVYFTGT 207 (550)
Q Consensus 166 ~~~l~~~~~~~~~~~~lT~~~------~~~~~~~~~s~dg~~l~f~~~ 207 (550)
---+|... +-+..+.+|... -.... .+|||||++|.-.-.
T Consensus 194 tikvwrt~-dw~i~k~It~pf~~~~~~T~f~R-lSWSPDG~~las~nA 239 (942)
T KOG0973|consen 194 TLKVWRTS-DWGIEKSITKPFEESPLTTFFLR-LSWSPDGHHLASPNA 239 (942)
T ss_pred eEEEEEcc-cceeeEeeccchhhCCCcceeee-cccCCCcCeecchhh
Confidence 22344422 233444555421 11223 469999998875543
No 257
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.15 E-value=0.052 Score=53.64 Aligned_cols=198 Identities=13% Similarity=0.060 Sum_probs=101.9
Q ss_pred cceEEEcCCCCeEEEEEEeCCCCCeEEEeecCCCCCCCCCcccccCCCCCCCCCeEEEEEEECCCCceEEE-EcccCCCC
Q 008873 4 KTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVSWM-DLQCGGTD 82 (550)
Q Consensus 4 ~~~~~wSPdg~~lay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~l-~~~~~~~~ 82 (550)
-+.|.|||-+.-|||-.--.... -+++-++.+-+++..+. ++
T Consensus 349 Ir~FswsP~~~llAYwtpe~~~~-------------------------------parvtL~evPs~~~iRt~nl------ 391 (698)
T KOG2314|consen 349 IRDFSWSPTSNLLAYWTPETNNI-------------------------------PARVTLMEVPSKREIRTKNL------ 391 (698)
T ss_pred ccCcccCCCcceEEEEcccccCC-------------------------------cceEEEEecCccceeeeccc------
Confidence 46789999999999975332221 12344455554433211 11
Q ss_pred CCCCCceeEEEEECCCCeEEEEEEecCCC--------ceEEEEEECCCCceEEEEEeecCceeeccCccccCCCCCccCC
Q 008873 83 QNYDEEYLARVNWMHGNILTAQVLNRSQT--------KLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYS 154 (550)
Q Consensus 83 ~~~~~~~~~~~~wspDg~~i~~~~~r~~~--------~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (550)
.....+..-|-..|++|.+-..|-.. +.+|+.|.-+.=-...+ +.. .+.+.+ +|.|
T Consensus 392 ---fnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~v-elk-------e~vi~F-----aWEP 455 (698)
T KOG2314|consen 392 ---FNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVV-ELK-------ESVIAF-----AWEP 455 (698)
T ss_pred ---eeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceee-ecc-------hheeee-----eecc
Confidence 12334556899999988776655431 23555554332111111 111 112223 2444
Q ss_pred --CcEEEEEccCC--ccEEEEEeCCCceeecccccCeEEEEEEeEeecCCEEEEEEcCCCCceeEEEEEEeCCCCCCCCC
Q 008873 155 --GGFIWASEKTG--FRHLYLHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLE 230 (550)
Q Consensus 155 --~~~~~~s~~~g--~~~l~~~~~~~~~~~~lT~~~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~~v~~~~~g~~~~~ 230 (550)
++|..++-..- .-..|.+....++++.+..-+-..-.-..|||.|+.++..+-... ...|+.+|.....-
T Consensus 456 ~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk~~~N~vfwsPkG~fvvva~l~s~--~g~l~F~D~~~a~~---- 529 (698)
T KOG2314|consen 456 HGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDKKFANTVFWSPKGRFVVVAALVSR--RGDLEFYDTDYADL---- 529 (698)
T ss_pred CCCeEEEEEccccccceeEEEeecCCCchhhhhhhcccccceEEEcCCCcEEEEEEeccc--ccceEEEecchhhh----
Confidence 45776664322 345677766566555444322222223469999998887766432 24566666521010
Q ss_pred CCeeeCCCCceEEEEECCCCCEEEEeecCC
Q 008873 231 APVKLTNGKGKHVAVLDHNMRNFVDFHDSL 260 (550)
Q Consensus 231 ~~~~lt~~~~~~~~~~s~dg~~l~~~~s~~ 260 (550)
+......-.+.....|.|.|+|++-..+..
T Consensus 530 k~~~~~eh~~at~veWDPtGRYvvT~ss~w 559 (698)
T KOG2314|consen 530 KDTASPEHFAATEVEWDPTGRYVVTSSSSW 559 (698)
T ss_pred hhccCccccccccceECCCCCEEEEeeehh
Confidence 111111112345567999999987655443
No 258
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=97.13 E-value=0.027 Score=54.95 Aligned_cols=119 Identities=12% Similarity=0.116 Sum_probs=58.6
Q ss_pred EEEEEeEeecCCEEEEEEcCCCCceeEEEEEEeCCCCCCCCCCCeeeCCCCceEEEEECCCCCEEEEeecCC---CCCCE
Q 008873 189 VEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTNGKGKHVAVLDHNMRNFVDFHDSL---DSPPR 265 (550)
Q Consensus 189 ~~~~~~~s~dg~~l~f~~~~~~~~~~~l~~v~~~~~g~~~~~~~~~lt~~~~~~~~~~s~dg~~l~~~~s~~---~~p~~ 265 (550)
+..+ .+|+||+.|+-.+.++. ..||-+.- -+.++....-|...--...+.||||.+ |+++.++. ..++.
T Consensus 367 Itsi-~FS~dg~~LlSRg~D~t---LKvWDLrq---~kkpL~~~tgL~t~~~~tdc~FSPd~k-li~TGtS~~~~~~~g~ 438 (641)
T KOG0772|consen 367 ITSI-SFSYDGNYLLSRGFDDT---LKVWDLRQ---FKKPLNVRTGLPTPFPGTDCCFSPDDK-LILTGTSAPNGMTAGT 438 (641)
T ss_pred eeEE-EeccccchhhhccCCCc---eeeeeccc---cccchhhhcCCCccCCCCccccCCCce-EEEecccccCCCCCce
Confidence 3444 49999998876655543 56663321 111111111122111245678999986 45555543 34567
Q ss_pred EEEEEcCCCceeEeccCCCCChhhhhcCCC-CCCeEEEEEcCCCcEEEEEEEcCCC
Q 008873 266 ILLCSLQDGSLVLPLYEQPLTVPRIKRLQL-EPPDIVQIQANDGTVLYGALYKPDE 320 (550)
Q Consensus 266 l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~l~~~~~~P~~ 320 (550)
|+.++..+-.....+.-. ........| ++..++...+.||. + ..+|-|..
T Consensus 439 L~f~d~~t~d~v~ki~i~---~aSvv~~~WhpkLNQi~~gsgdG~-~-~vyYdp~~ 489 (641)
T KOG0772|consen 439 LFFFDRMTLDTVYKIDIS---TASVVRCLWHPKLNQIFAGSGDGT-A-HVYYDPNE 489 (641)
T ss_pred EEEEeccceeeEEEecCC---CceEEEEeecchhhheeeecCCCc-e-EEEECccc
Confidence 888886554433333211 112222222 23355666666764 2 23345543
No 259
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=97.11 E-value=0.016 Score=53.01 Aligned_cols=50 Identities=16% Similarity=0.374 Sum_probs=38.1
Q ss_pred cEEEEEeCCCceeecccccCeEEEEE--EeEeecCCEEEEEEcCCCCceeEEEEEEe
Q 008873 167 RHLYLHDINGTCLGPITEGDWMVEQI--VGVNEASGQVYFTGTLDGPLESHLYCAKL 221 (550)
Q Consensus 167 ~~l~~~~~~~~~~~~lT~~~~~~~~~--~~~s~dg~~l~f~~~~~~~~~~~l~~v~~ 221 (550)
..+|+++..|.-.+-.++|+.+-.++ ...||.|.++|..+.+ .-+|.++.
T Consensus 415 ntv~imn~qGQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED-----~vlYCF~~ 466 (508)
T KOG0275|consen 415 NTVYIMNMQGQVVRSFSSGKREGGDFINAILSPKGEWIYCIGED-----GVLYCFSV 466 (508)
T ss_pred CeEEEEeccceEEeeeccCCccCCceEEEEecCCCcEEEEEccC-----cEEEEEEe
Confidence 46999999888888888886543332 2589999999988664 46888876
No 260
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=97.11 E-value=0.17 Score=52.02 Aligned_cols=42 Identities=17% Similarity=0.173 Sum_probs=33.1
Q ss_pred EEEEEECCCCceEEEEcccCCCCCCCCCceeEEEEECCCCeEEEEEEecC
Q 008873 60 RLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRS 109 (550)
Q Consensus 60 ~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~wspDg~~i~~~~~r~ 109 (550)
+|.++|+...+...+.++ ..+.+..++.||||.+++.+..|+
T Consensus 36 rvsv~dLknN~S~Tl~~e--------~~~NI~~ialSp~g~lllavdE~g 77 (893)
T KOG0291|consen 36 RVSVFDLKNNKSYTLPLE--------TRYNITRIALSPDGTLLLAVDERG 77 (893)
T ss_pred EEEEEEccCCcceeEEee--------cCCceEEEEeCCCceEEEEEcCCC
Confidence 578999999888877653 356789999999999887775554
No 261
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=97.09 E-value=0.00092 Score=41.67 Aligned_cols=38 Identities=13% Similarity=0.104 Sum_probs=24.9
Q ss_pred ecccccCeEEEEEEeEeecCCEEEEEEcCCCCceeEEEE
Q 008873 180 GPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYC 218 (550)
Q Consensus 180 ~~lT~~~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~~ 218 (550)
++||........+ .|||||++|+|++++.+.+..+||+
T Consensus 2 ~~~t~~~~~~~~p-~~SpDGk~i~f~s~~~~~g~~diy~ 39 (39)
T PF07676_consen 2 KQLTNSPGDDGSP-AWSPDGKYIYFTSNRNDRGSFDIYV 39 (39)
T ss_dssp EEES-SSSSEEEE-EE-TTSSEEEEEEECT--SSEEEEE
T ss_pred cCcccCCccccCE-EEecCCCEEEEEecCCCCCCcCEEC
Confidence 5667665544445 4999999999999987334577874
No 262
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=96.98 E-value=0.023 Score=58.25 Aligned_cols=165 Identities=19% Similarity=0.134 Sum_probs=94.8
Q ss_pred CCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEe-ecCceeeccCccccCCCCCccCCCcEEEEEcc
Q 008873 85 YDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVE-ELDSWVNLHDCFTPLDKGVTKYSGGFIWASEK 163 (550)
Q Consensus 85 ~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 163 (550)
.-.+.+...++|||.++|+.++... ..+||.++..+ +..+... ..+.|.- ..+|.|++|+|-.
T Consensus 449 GH~GPVyg~sFsPd~rfLlScSED~--svRLWsl~t~s--~~V~y~GH~~PVwdV------------~F~P~GyYFatas 512 (707)
T KOG0263|consen 449 GHSGPVYGCSFSPDRRFLLSCSEDS--SVRLWSLDTWS--CLVIYKGHLAPVWDV------------QFAPRGYYFATAS 512 (707)
T ss_pred cCCCceeeeeecccccceeeccCCc--ceeeeecccce--eEEEecCCCcceeeE------------EecCCceEEEecC
Confidence 3345677889999999888776543 23588876543 3344331 2334521 2346678887653
Q ss_pred -CCccEEEEEeCCCceeecccccCeEEEEEEeEeecCCEEEEEEcCCCCceeEEEEEEeCCCCCCCCCCCeeeCCCCc-e
Q 008873 164 -TGFRHLYLHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTNGKG-K 241 (550)
Q Consensus 164 -~g~~~l~~~~~~~~~~~~lT~~~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~~v~~~~~g~~~~~~~~~lt~~~~-~ 241 (550)
++-.+||..|- .++.++=.|.....+...+.|...+++ ++..+. ..++|-+.. |. .++..+...+ .
T Consensus 513 ~D~tArLWs~d~--~~PlRifaghlsDV~cv~FHPNs~Y~a-TGSsD~--tVRlWDv~~---G~----~VRiF~GH~~~V 580 (707)
T KOG0263|consen 513 HDQTARLWSTDH--NKPLRIFAGHLSDVDCVSFHPNSNYVA-TGSSDR--TVRLWDVST---GN----SVRIFTGHKGPV 580 (707)
T ss_pred CCceeeeeeccc--CCchhhhcccccccceEEECCcccccc-cCCCCc--eEEEEEcCC---Cc----EEEEecCCCCce
Confidence 44568888874 223333333322223335888876544 433332 366664443 32 3444443333 6
Q ss_pred EEEEECCCCCEEEEeecCCCCCCEEEEEEcCCCceeEecc
Q 008873 242 HVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLY 281 (550)
Q Consensus 242 ~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~~~~~l~ 281 (550)
.++.+||+|++|+-- .....|-+.|+.+|+.+..+.
T Consensus 581 ~al~~Sp~Gr~LaSg----~ed~~I~iWDl~~~~~v~~l~ 616 (707)
T KOG0263|consen 581 TALAFSPCGRYLASG----DEDGLIKIWDLANGSLVKQLK 616 (707)
T ss_pred EEEEEcCCCceEeec----ccCCcEEEEEcCCCcchhhhh
Confidence 677999999988533 333578888888877554443
No 263
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=96.97 E-value=0.092 Score=48.29 Aligned_cols=85 Identities=12% Similarity=0.103 Sum_probs=47.8
Q ss_pred cEEEEEeCCCceeecccccCeEEEEEEeEeecCCEEEEEEcCCCCceeEEEEEEeCCCCCCCCCCCeeeCCC----CceE
Q 008873 167 RHLYLHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTNG----KGKH 242 (550)
Q Consensus 167 ~~l~~~~~~~~~~~~lT~~~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~~v~~~~~g~~~~~~~~~lt~~----~~~~ 242 (550)
..|.++++.|....-+......... ..+||+|+.|+..+-.-+ ..+|.+-...+|..+ ++.++..- .+.+
T Consensus 209 t~i~lw~lkGq~L~~idtnq~~n~~-aavSP~GRFia~~gFTpD---VkVwE~~f~kdG~fq--ev~rvf~LkGH~saV~ 282 (420)
T KOG2096|consen 209 TKICLWDLKGQLLQSIDTNQSSNYD-AAVSPDGRFIAVSGFTPD---VKVWEPIFTKDGTFQ--EVKRVFSLKGHQSAVL 282 (420)
T ss_pred CcEEEEecCCceeeeeccccccccc-eeeCCCCcEEEEecCCCC---ceEEEEEeccCcchh--hhhhhheeccchhhee
Confidence 4677777776433333222211122 358999998887665433 567766553345321 23333222 2367
Q ss_pred EEEECCCCCEEEEee
Q 008873 243 VAVLDHNMRNFVDFH 257 (550)
Q Consensus 243 ~~~~s~dg~~l~~~~ 257 (550)
.+.||++.+.++-+.
T Consensus 283 ~~aFsn~S~r~vtvS 297 (420)
T KOG2096|consen 283 AAAFSNSSTRAVTVS 297 (420)
T ss_pred eeeeCCCcceeEEEe
Confidence 778999988876553
No 264
>KOG4389 consensus Acetylcholinesterase/Butyrylcholinesterase [Signal transduction mechanisms]
Probab=96.94 E-value=0.0011 Score=64.27 Aligned_cols=125 Identities=20% Similarity=0.257 Sum_probs=79.4
Q ss_pred EEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHH-hCCcEEEEECCCCCCCCchh---hHHHHhh
Q 008873 311 LYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLR-SKGILVWKLDNRGTARRGLK---FEASIKH 386 (550)
Q Consensus 311 l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~-~~G~~vv~~d~rG~g~~~~~---~~~~~~~ 386 (550)
+...+|.|... + .+..|+|+++||+.... ..... -+ -.+.|+ ..+.+||.++||-. -.|-- ......+
T Consensus 121 LYlNVW~P~~~-p--~n~tVlVWiyGGGF~sG-t~SLd-vY--dGk~la~~envIvVs~NYRvG-~FGFL~l~~~~eaPG 192 (601)
T KOG4389|consen 121 LYLNVWAPAAD-P--YNLTVLVWIYGGGFYSG-TPSLD-VY--DGKFLAAVENVIVVSMNYRVG-AFGFLYLPGHPEAPG 192 (601)
T ss_pred eEEEEeccCCC-C--CCceEEEEEEcCccccC-Cccee-ee--ccceeeeeccEEEEEeeeeec-cceEEecCCCCCCCC
Confidence 66677888421 1 34459999999754322 11111 11 135565 45789999999942 12211 1223334
Q ss_pred ccCCCchHHHHHHHHHHHHc---CCCCCCceEEEEechhHHHHHHHHhhCC---CeeEEEEEcCCcC
Q 008873 387 NCGRIDAEDQLTGAEWLIKQ---GLAKVGHIGLYGWSYGGYLSAITLARFP---DVFQCAVSGAPVT 447 (550)
Q Consensus 387 ~~~~~~~~D~~~~~~~l~~~---~~~d~~~i~i~G~S~GG~~a~~~~~~~~---~~~~~~v~~~~~~ 447 (550)
++| +-|+.-|++|+.+. -.-|++||.++|.|+|+..+..-+.. | .+|+-+|+.+|..
T Consensus 193 NmG---l~DQqLAl~WV~~Ni~aFGGnp~~vTLFGESAGaASv~aHLls-P~S~glF~raIlQSGS~ 255 (601)
T KOG4389|consen 193 NMG---LLDQQLALQWVQENIAAFGGNPSRVTLFGESAGAASVVAHLLS-PGSRGLFHRAILQSGSL 255 (601)
T ss_pred ccc---hHHHHHHHHHHHHhHHHhCCCcceEEEeccccchhhhhheecC-CCchhhHHHHHhhcCCC
Confidence 444 88999999999886 33589999999999999877554442 3 3677788777654
No 265
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=96.93 E-value=0.15 Score=47.42 Aligned_cols=173 Identities=12% Similarity=0.000 Sum_probs=77.9
Q ss_pred cceEEEcCCCCeEEEEEEeCCCCCeEEEeecCCCCCCCCCcccccCCCCCCCCCeEEEEEEECCCCceEEEEc-ccCC--
Q 008873 4 KTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVSWMDL-QCGG-- 80 (550)
Q Consensus 4 ~~~~~wSPdg~~lay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~l~~-~~~~-- 80 (550)
.....+||||+.+||+...+.....+... .++..........+.-|.-. +...+|.++......+.+.. ..+.
T Consensus 26 ~~s~AvS~dg~~~A~v~~~~~~~~L~~~~-~~~~~~~~~~g~~l~~PS~d---~~g~~W~v~~~~~~~~~~~~~~~g~~~ 101 (253)
T PF10647_consen 26 VTSPAVSPDGSRVAAVSEGDGGRSLYVGP-AGGPVRPVLTGGSLTRPSWD---PDGWVWTVDDGSGGVRVVRDSASGTGE 101 (253)
T ss_pred ccceEECCCCCeEEEEEEcCCCCEEEEEc-CCCcceeeccCCcccccccc---CCCCEEEEEcCCCceEEEEecCCCcce
Confidence 46788999999999998434333333332 22211000001111111111 11335555443333322210 0010
Q ss_pred C---CCCCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECC---CCceEEEEEeecCceeeccCccccCCCCCccCC
Q 008873 81 T---DQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIK---TGQRKVILVEELDSWVNLHDCFTPLDKGVTKYS 154 (550)
Q Consensus 81 ~---~~~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~---~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (550)
. ........+..+++||||++++++..+... .+|++.-+. .|..+.|.....-.- .. .... ....|.+
T Consensus 102 ~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~-~~v~va~V~r~~~g~~~~l~~~~~~~~-~~---~~~v-~~v~W~~ 175 (253)
T PF10647_consen 102 PVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGG-GRVYVAGVVRDGDGVPRRLTGPRRVAP-PL---LSDV-TDVAWSD 175 (253)
T ss_pred eEEecccccCCceEEEEECCCCcEEEEEEecCCC-CeEEEEEEEeCCCCCcceeccceEecc-cc---cCcc-eeeeecC
Confidence 0 001111168899999999999988766543 446555332 332333332110000 00 0000 0014555
Q ss_pred Cc-EEEEEccCCccEEEEEeCCCceeecccccC
Q 008873 155 GG-FIWASEKTGFRHLYLHDINGTCLGPITEGD 186 (550)
Q Consensus 155 ~~-~~~~s~~~g~~~l~~~~~~~~~~~~lT~~~ 186 (550)
+. +++.....+-.....+..+|+..++|+..+
T Consensus 176 ~~~L~V~~~~~~~~~~~~v~~dG~~~~~l~~~~ 208 (253)
T PF10647_consen 176 DSTLVVLGRSAGGPVVRLVSVDGGPSTPLPSVN 208 (253)
T ss_pred CCEEEEEeCCCCCceeEEEEccCCcccccCCCC
Confidence 54 666655544322224666787777775544
No 266
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=96.88 E-value=0.099 Score=46.79 Aligned_cols=73 Identities=10% Similarity=-0.002 Sum_probs=49.9
Q ss_pred eecccccCeEEEEEEeEeecCCEEEEEEcCCCCceeEEEEEEeCCCCCCCCCCCeeeCCCCceEEEEECCCCCEEEEeec
Q 008873 179 LGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTNGKGKHVAVLDHNMRNFVDFHD 258 (550)
Q Consensus 179 ~~~lT~~~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~~v~~~~~g~~~~~~~~~lt~~~~~~~~~~s~dg~~l~~~~s 258 (550)
.|-+|+-+|.+..+. +|.||+.|+-. +++. ...|..+. +|. +.-++....-..+++|-|.--.|+|.++
T Consensus 224 ~R~isRldwpVRTlS-FS~dg~~lASa-SEDh--~IDIA~ve---tGd----~~~eI~~~~~t~tVAWHPk~~LLAyA~d 292 (313)
T KOG1407|consen 224 ERCISRLDWPVRTLS-FSHDGRMLASA-SEDH--FIDIAEVE---TGD----RVWEIPCEGPTFTVAWHPKRPLLAYACD 292 (313)
T ss_pred heeeccccCceEEEE-eccCcceeecc-Cccc--eEEeEecc---cCC----eEEEeeccCCceeEEecCCCceeeEEec
Confidence 577888899988765 99999876633 3332 24444333 344 4556666555788899999888888887
Q ss_pred CCCC
Q 008873 259 SLDS 262 (550)
Q Consensus 259 ~~~~ 262 (550)
..+.
T Consensus 293 dk~~ 296 (313)
T KOG1407|consen 293 DKDG 296 (313)
T ss_pred CCCC
Confidence 6544
No 267
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=96.83 E-value=0.13 Score=49.87 Aligned_cols=115 Identities=17% Similarity=0.234 Sum_probs=60.8
Q ss_pred EEEEECC-CCeEEEEEEecCCCceEEEEEECCCCceEEEE-----Eee--cCceeeccCccccCCCCCccCCC-cEEEE-
Q 008873 91 ARVNWMH-GNILTAQVLNRSQTKLKVLKFDIKTGQRKVIL-----VEE--LDSWVNLHDCFTPLDKGVTKYSG-GFIWA- 160 (550)
Q Consensus 91 ~~~~wsp-Dg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~-----~~~--~~~~~~~~~~~~~~~~~~~~~~~-~~~~~- 160 (550)
..|.+++ ||+.++.... ..|+.+|+.+.+...+. ... .++|.+.+.. +. ..+++ +.+|+
T Consensus 197 ~rP~~~~~dg~~~~vs~e-----G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q--~i----a~~~dg~~lyV~ 265 (352)
T TIGR02658 197 NHPAYSNKSGRLVWPTYT-----GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQ--QV----AYHRARDRIYLL 265 (352)
T ss_pred cCCceEcCCCcEEEEecC-----CeEEEEecCCCcceecceeeeccccccccccCCCcce--eE----EEcCCCCEEEEE
Confidence 3445566 8876655433 35999997665443221 111 2245543311 11 12333 34554
Q ss_pred Ecc-------CCccEEEEEeCCCcee-ecccccCeEEEEEEeEeecCCEEEEEEcCCCCceeEEEEEEe
Q 008873 161 SEK-------TGFRHLYLHDINGTCL-GPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKL 221 (550)
Q Consensus 161 s~~-------~g~~~l~~~~~~~~~~-~~lT~~~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~~v~~ 221 (550)
... .+-.+|+++|..+++. ++|.-|. ....+. +|+||+.++|..+... ..|..+|.
T Consensus 266 ~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~-~~~~ia-vS~Dgkp~lyvtn~~s---~~VsViD~ 329 (352)
T TIGR02658 266 ADQRAKWTHKTASRFLFVVDAKTGKRLRKIELGH-EIDSIN-VSQDAKPLLYALSTGD---KTLYIFDA 329 (352)
T ss_pred ecCCccccccCCCCEEEEEECCCCeEEEEEeCCC-ceeeEE-ECCCCCeEEEEeCCCC---CcEEEEEC
Confidence 322 1236999999887664 3444454 233443 8999994555555432 24666776
No 268
>PF11187 DUF2974: Protein of unknown function (DUF2974); InterPro: IPR024499 This family of proteins has no known function.
Probab=96.80 E-value=0.0035 Score=56.62 Aligned_cols=76 Identities=21% Similarity=0.173 Sum_probs=47.1
Q ss_pred CCCCCCCchhhHHHHhhccCCCchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhC----CCeeEEEEEcCC
Q 008873 370 NRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARF----PDVFQCAVSGAP 445 (550)
Q Consensus 370 ~rG~g~~~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~----~~~~~~~v~~~~ 445 (550)
+||+..+...|.+.....+. ....-+..|++|+.+.-.-.+.+|.+.|||.||.+|.+++..- .+++..+++..+
T Consensus 43 FRGTd~t~~~W~ed~~~~~~-~~~~~q~~A~~yl~~~~~~~~~~i~v~GHSkGGnLA~yaa~~~~~~~~~rI~~vy~fDg 121 (224)
T PF11187_consen 43 FRGTDDTLVDWKEDFNMSFQ-DETPQQKSALAYLKKIAKKYPGKIYVTGHSKGGNLAQYAAANCDDEIQDRISKVYSFDG 121 (224)
T ss_pred EECCCCchhhHHHHHHhhcC-CCCHHHHHHHHHHHHHHHhCCCCEEEEEechhhHHHHHHHHHccHHHhhheeEEEEeeC
Confidence 45554444445544433322 1244456777777654211234699999999999999999863 346777777665
Q ss_pred c
Q 008873 446 V 446 (550)
Q Consensus 446 ~ 446 (550)
.
T Consensus 122 P 122 (224)
T PF11187_consen 122 P 122 (224)
T ss_pred C
Confidence 3
No 269
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=96.80 E-value=0.18 Score=46.52 Aligned_cols=223 Identities=12% Similarity=0.063 Sum_probs=106.1
Q ss_pred CccceEEEcCCCCeEEEEEEeCCCCCeEEEeecCCCCCC-------------CCCcccccCCCCCCC------CCeEEEE
Q 008873 2 DRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVG-------------SEAQEDHAYPFAGAS------NVKVRLG 62 (550)
Q Consensus 2 ~~~~~~~wSPdg~~lay~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~y~~~g~~------~~~~~l~ 62 (550)
|....+.|+||-+.+++...+..+.-.|-+....+..+. .+....+.|-.+|+. .....|.
T Consensus 133 dhpT~V~FapDc~s~vv~~~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~ 212 (420)
T KOG2096|consen 133 DHPTRVVFAPDCKSVVVSVKRGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKIC 212 (420)
T ss_pred CCceEEEECCCcceEEEEEccCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEE
Confidence 445678999999999987765443322222221111000 011111222222221 1224678
Q ss_pred EEECCCCceEEEEcccCCCCCCCCCceeEEEEECCCCeEEEEEEecCCCceEEEEE-ECCCCce---EEEEEeecCceee
Q 008873 63 VVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKF-DIKTGQR---KVILVEELDSWVN 138 (550)
Q Consensus 63 ~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~-~~~~g~~---~~l~~~~~~~~~~ 138 (550)
+|++++.-...++.. .......+.||||++|+...--. +. .+|.+ =.+.|+. .++....+..-
T Consensus 213 lw~lkGq~L~~idtn---------q~~n~~aavSP~GRFia~~gFTp-DV-kVwE~~f~kdG~fqev~rvf~LkGH~s-- 279 (420)
T KOG2096|consen 213 LWDLKGQLLQSIDTN---------QSSNYDAAVSPDGRFIAVSGFTP-DV-KVWEPIFTKDGTFQEVKRVFSLKGHQS-- 279 (420)
T ss_pred EEecCCceeeeeccc---------cccccceeeCCCCcEEEEecCCC-Cc-eEEEEEeccCcchhhhhhhheeccchh--
Confidence 889986555545332 23345678999999887552211 11 23332 2233433 33333322200
Q ss_pred ccCccccCCCCCccCCCcEEEEEccCCccEEEEEeCC---Cceeeccccc--------CeEEEEEEeEeecCCEEEEEEc
Q 008873 139 LHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDIN---GTCLGPITEG--------DWMVEQIVGVNEASGQVYFTGT 207 (550)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~---~~~~~~lT~~--------~~~~~~~~~~s~dg~~l~f~~~ 207 (550)
....+.|.+ +...++-+| ++|-+.||-.|.. +...+.|-.| .-.+ . ...+|.|+.|+.+.-
T Consensus 280 aV~~~aFsn-----~S~r~vtvS-kDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~-R-L~lsP~g~~lA~s~g 351 (420)
T KOG2096|consen 280 AVLAAAFSN-----SSTRAVTVS-KDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPV-R-LELSPSGDSLAVSFG 351 (420)
T ss_pred heeeeeeCC-----CcceeEEEe-cCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCce-E-EEeCCCCcEEEeecC
Confidence 000122211 223355444 5677777766632 2222333222 1112 2 348899988876643
Q ss_pred CCCCceeEEEEEEeCCCCCCCCCCCeeeC--CCCceEEEEECCCCCEEEEe
Q 008873 208 LDGPLESHLYCAKLYPDWNHTLEAPVKLT--NGKGKHVAVLDHNMRNFVDF 256 (550)
Q Consensus 208 ~~~~~~~~l~~v~~~~~g~~~~~~~~~lt--~~~~~~~~~~s~dg~~l~~~ 256 (550)
. ..++|... +|+ ...++. .+..+.+++|++||++++-.
T Consensus 352 s----~l~~~~se---~g~----~~~~~e~~h~~~Is~is~~~~g~~~atc 391 (420)
T KOG2096|consen 352 S----DLKVFASE---DGK----DYPELEDIHSTTISSISYSSDGKYIATC 391 (420)
T ss_pred C----ceEEEEcc---cCc----cchhHHHhhcCceeeEEecCCCcEEeee
Confidence 2 25666433 343 111221 12346777999999987644
No 270
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=96.78 E-value=0.52 Score=44.85 Aligned_cols=197 Identities=13% Similarity=0.086 Sum_probs=97.5
Q ss_pred EEEEEECCCCceE-EEEcccCCCCCCCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCceee
Q 008873 60 RLGVVSAAGGPVS-WMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVN 138 (550)
Q Consensus 60 ~l~~~d~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~ 138 (550)
-|-+||.+|-+.. .+.+..++..+. -.+....+.|.|||++++..--. .+-|-++|++.++... +-.-+++..
T Consensus 68 vv~~~D~~TL~~~~EI~iP~k~R~~~--~~~~~~~~ls~dgk~~~V~N~TP--a~SVtVVDl~~~kvv~--ei~~PGC~~ 141 (342)
T PF06433_consen 68 VVEIWDTQTLSPTGEIEIPPKPRAQV--VPYKNMFALSADGKFLYVQNFTP--ATSVTVVDLAAKKVVG--EIDTPGCWL 141 (342)
T ss_dssp EEEEEETTTTEEEEEEEETTS-B--B--S--GGGEEE-TTSSEEEEEEESS--SEEEEEEETTTTEEEE--EEEGTSEEE
T ss_pred EEEEEecCcCcccceEecCCcchhee--cccccceEEccCCcEEEEEccCC--CCeEEEEECCCCceee--eecCCCEEE
Confidence 4678999987554 444432211111 11223358899999776653222 3458999999987643 333343332
Q ss_pred ccCccccCCCCCccCCCcEEEEEccCCccEEEEEeCCCceeeccccc-----CeEEEEEEeEeecCCEEEEEEcCCCCce
Q 008873 139 LHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTCLGPITEG-----DWMVEQIVGVNEASGQVYFTGTLDGPLE 213 (550)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~~~~~~~lT~~-----~~~~~~~~~~s~dg~~l~f~~~~~~~~~ 213 (550)
.. | +.+++|.-. ..+|--.-+.+|.+|+..+.-|.- +.-...+ .++.++.++||.+-.
T Consensus 142 iy----P------~~~~~F~~l-C~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~-~~~~~~~~~~F~Sy~----- 204 (342)
T PF06433_consen 142 IY----P------SGNRGFSML-CGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHP-AYSRDGGRLYFVSYE----- 204 (342)
T ss_dssp EE----E------EETTEEEEE-ETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S---EEETTTTEEEEEBTT-----
T ss_pred EE----e------cCCCceEEE-ecCCceEEEEECCCCCEeEeeccccCCCCccccccc-ceECCCCeEEEEecC-----
Confidence 21 1 123444422 334544445566666554333321 1111122 255567788887654
Q ss_pred eEEEEEEeCCCCCCC-CCCCee-eCCC--------CceEEEEECCCCCEEEEeecCC-----CCC-CEEEEEEcCCCcee
Q 008873 214 SHLYCAKLYPDWNHT-LEAPVK-LTNG--------KGKHVAVLDHNMRNFVDFHDSL-----DSP-PRILLCSLQDGSLV 277 (550)
Q Consensus 214 ~~l~~v~~~~~g~~~-~~~~~~-lt~~--------~~~~~~~~s~dg~~l~~~~s~~-----~~p-~~l~~~~~~~g~~~ 277 (550)
-.||.+++ .+... ...+-. ++.. .|+..+++.+..+.|+..+... ..| .++|++|+++++.+
T Consensus 205 G~v~~~dl--sg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv 282 (342)
T PF06433_consen 205 GNVYSADL--SGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRV 282 (342)
T ss_dssp SEEEEEEE--TTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEE
T ss_pred CEEEEEec--cCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEE
Confidence 37888888 33310 001111 1110 2345566765554554444322 112 57999999999877
Q ss_pred Eecc
Q 008873 278 LPLY 281 (550)
Q Consensus 278 ~~l~ 281 (550)
+++.
T Consensus 283 ~Ri~ 286 (342)
T PF06433_consen 283 ARIP 286 (342)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 7664
No 271
>KOG2183 consensus Prolylcarboxypeptidase (angiotensinase C) [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=96.78 E-value=0.0044 Score=59.08 Aligned_cols=91 Identities=21% Similarity=0.261 Sum_probs=65.2
Q ss_pred HhHHHHhCCcEEEEECCCCCCCC---chh-hHHHHhhccC----CCchHHHHHHHHHHHHcCCCCCCceEEEEechhHHH
Q 008873 354 RAQYLRSKGILVWKLDNRGTARR---GLK-FEASIKHNCG----RIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYL 425 (550)
Q Consensus 354 ~~~~l~~~G~~vv~~d~rG~g~~---~~~-~~~~~~~~~~----~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~ 425 (550)
+.....+.+-.+|.+.+|-.|.+ |.. +.. ...++ +..+.|....+..|+.........|+++|.||||++
T Consensus 103 m~D~Ap~~~AllVFaEHRyYGeS~PFG~~s~k~--~~hlgyLtseQALADfA~ll~~lK~~~~a~~~pvIafGGSYGGML 180 (492)
T KOG2183|consen 103 MWDLAPELKALLVFAEHRYYGESLPFGSQSYKD--ARHLGYLTSEQALADFAELLTFLKRDLSAEASPVIAFGGSYGGML 180 (492)
T ss_pred HHhhhHhhCceEEEeehhccccCCCCcchhccC--hhhhccccHHHHHHHHHHHHHHHhhccccccCcEEEecCchhhHH
Confidence 34455578899999999977754 222 111 11222 235778888888888775556678999999999999
Q ss_pred HHHHHhhCCCeeEEEEE-cCCc
Q 008873 426 SAITLARFPDVFQCAVS-GAPV 446 (550)
Q Consensus 426 a~~~~~~~~~~~~~~v~-~~~~ 446 (550)
++|.-.++|.++.++++ .+|+
T Consensus 181 aAWfRlKYPHiv~GAlAaSAPv 202 (492)
T KOG2183|consen 181 AAWFRLKYPHIVLGALAASAPV 202 (492)
T ss_pred HHHHHhcChhhhhhhhhccCce
Confidence 99999999998777665 4555
No 272
>PTZ00421 coronin; Provisional
Probab=96.75 E-value=0.18 Score=51.72 Aligned_cols=54 Identities=13% Similarity=0.212 Sum_probs=36.9
Q ss_pred EEEEEECCCCceEEEEcccCCCCCCCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCce
Q 008873 60 RLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQR 125 (550)
Q Consensus 60 ~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~ 125 (550)
.|.+||+++++.... + ......+..++|+|||+.++...... .|.+.|+.+++.
T Consensus 149 tVrIWDl~tg~~~~~-l-------~~h~~~V~sla~spdG~lLatgs~Dg----~IrIwD~rsg~~ 202 (493)
T PTZ00421 149 VVNVWDVERGKAVEV-I-------KCHSDQITSLEWNLDGSLLCTTSKDK----KLNIIDPRDGTI 202 (493)
T ss_pred EEEEEECCCCeEEEE-E-------cCCCCceEEEEEECCCCEEEEecCCC----EEEEEECCCCcE
Confidence 478899998865432 2 12234578899999999887665332 377778888774
No 273
>PLN03016 sinapoylglucose-malate O-sinapoyltransferase
Probab=96.75 E-value=0.0061 Score=61.06 Aligned_cols=62 Identities=16% Similarity=0.047 Sum_probs=49.1
Q ss_pred CcEEEEecCCCCCCChHHHHHHHHHHHHcC--------------------CC-eEEEEcCCCCCcCCCCCcHHHHHHHHH
Q 008873 485 GKLLLVHGMIDENVHFRHTARLINALVAAR--------------------KP-YEILIFPDERHMPRRHRDRIYMEERIW 543 (550)
Q Consensus 485 ~P~lii~G~~D~~v~~~~~~~~~~~l~~~~--------------------~~-~~~~~~p~~~H~~~~~~~~~~~~~~~~ 543 (550)
.++||..|..|.+|+....+.+.++|.-.+ .+ ..++++-++||... ...+..++.+.
T Consensus 348 irVLiY~Gd~D~icn~~Gt~~wi~~L~w~~~~~~~~w~~~~~~~G~vk~y~n~ltfv~V~~AGHmVp--~qP~~al~m~~ 425 (433)
T PLN03016 348 YRSLIYSGDHDIAVPFLATQAWIRSLNYSPIHNWRPWMINNQIAGYTRAYSNKMTFATIKAGGHTAE--YRPNETFIMFQ 425 (433)
T ss_pred ceEEEEECCccccCCcHhHHHHHHhCCCCCCCCcccccCCCEeeeEEEEeCCceEEEEEcCCCCCCC--CCHHHHHHHHH
Confidence 589999999999999999999998885211 22 67778889999983 46777888888
Q ss_pred HHHHH
Q 008873 544 EFIER 548 (550)
Q Consensus 544 ~fl~~ 548 (550)
+|+..
T Consensus 426 ~Fi~~ 430 (433)
T PLN03016 426 RWISG 430 (433)
T ss_pred HHHcC
Confidence 88753
No 274
>COG3319 Thioesterase domains of type I polyketide synthases or non-ribosomal peptide synthetases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=96.74 E-value=0.0029 Score=58.08 Aligned_cols=100 Identities=18% Similarity=0.140 Sum_probs=60.5
Q ss_pred eEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCchhhHHHHhhccCCCchHHHHHH-HHHHHHcC
Q 008873 329 KTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTG-AEWLIKQG 407 (550)
Q Consensus 329 P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~~~~~~~~~~~~~~~~~D~~~~-~~~l~~~~ 407 (550)
|.|+++|+..+... .|..++..|... ..|+..+.+|.+.-...+ .+++|+.+. ++.+.+..
T Consensus 1 ~pLF~fhp~~G~~~-------~~~~L~~~l~~~-~~v~~l~a~g~~~~~~~~----------~~l~~~a~~yv~~Ir~~Q 62 (257)
T COG3319 1 PPLFCFHPAGGSVL-------AYAPLAAALGPL-LPVYGLQAPGYGAGEQPF----------ASLDDMAAAYVAAIRRVQ 62 (257)
T ss_pred CCEEEEcCCCCcHH-------HHHHHHHHhccC-ceeeccccCccccccccc----------CCHHHHHHHHHHHHHHhC
Confidence 46788999766532 233344555555 899999999876422211 123444333 22333321
Q ss_pred CCCCCceEEEEechhHHHHHHHHhh---CCCeeEEEEEcCCcCC
Q 008873 408 LAKVGHIGLYGWSYGGYLSAITLAR---FPDVFQCAVSGAPVTS 448 (550)
Q Consensus 408 ~~d~~~i~i~G~S~GG~~a~~~~~~---~~~~~~~~v~~~~~~~ 448 (550)
....+.+.|||+||.++.-+|.+ ..+-++-+++...+..
T Consensus 63 --P~GPy~L~G~S~GG~vA~evA~qL~~~G~~Va~L~llD~~~~ 104 (257)
T COG3319 63 --PEGPYVLLGWSLGGAVAFEVAAQLEAQGEEVAFLGLLDAVPP 104 (257)
T ss_pred --CCCCEEEEeeccccHHHHHHHHHHHhCCCeEEEEEEeccCCC
Confidence 23579999999999999988865 2345566666555444
No 275
>PF08386 Abhydrolase_4: TAP-like protein; InterPro: IPR013595 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents a C-terminal domain associated with putative hydrolases and bacterial peptidases that belong to MEROPS peptidase family S33 (clan SC). They are related to a tripeptidyl aminopeptidase from Streptomyces lividans (Q54410 from SWISSPROT). A member of this family (Q6E3K7 from SWISSPROT) is thought to be involved in the C-terminal processing of propionicin F, a bacteriocidin characterised from Propionibacterium freudenreichii []. ; GO: 0008233 peptidase activity
Probab=96.73 E-value=0.0049 Score=48.22 Aligned_cols=59 Identities=8% Similarity=0.126 Sum_probs=47.6
Q ss_pred CCcEEEEecCCCCCCChHHHHHHHHHHHHcCCCeEEEEcCCCCCcCCCCCcHHHHHHHHHHHHH
Q 008873 484 KGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIE 547 (550)
Q Consensus 484 ~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p~~~H~~~~~~~~~~~~~~~~~fl~ 547 (550)
..|+|++.++.|..+|.+.+..+.+.|. ..+++..++.+|+... ....=..+.+.+||.
T Consensus 34 ~~piL~l~~~~Dp~TP~~~a~~~~~~l~----~s~lvt~~g~gHg~~~-~~s~C~~~~v~~yl~ 92 (103)
T PF08386_consen 34 APPILVLGGTHDPVTPYEGARAMAARLP----GSRLVTVDGAGHGVYA-GGSPCVDKAVDDYLL 92 (103)
T ss_pred CCCEEEEecCcCCCCcHHHHHHHHHHCC----CceEEEEeccCcceec-CCChHHHHHHHHHHH
Confidence 4799999999999999999999998872 3689999999999753 223345677778875
No 276
>COG3946 VirJ Type IV secretory pathway, VirJ component [Intracellular trafficking and secretion]
Probab=96.73 E-value=0.0072 Score=57.56 Aligned_cols=163 Identities=17% Similarity=0.205 Sum_probs=89.1
Q ss_pred hHhHHHHhCCcEEEEECCCCCCCCchhhHHHHhhccCCCchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhh
Q 008873 353 MRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLAR 432 (550)
Q Consensus 353 ~~~~~l~~~G~~vv~~d~rG~g~~~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~ 432 (550)
.....|+++|+.||-+|---.-.+.+.. .....|+.+.+++...+- ...++.++|+|+|+=+.-.+-.+
T Consensus 278 ~v~~~l~~~gvpVvGvdsLRYfW~~rtP---------e~~a~Dl~r~i~~y~~~w--~~~~~~liGySfGADvlP~~~n~ 346 (456)
T COG3946 278 EVAEALQKQGVPVVGVDSLRYFWSERTP---------EQIAADLSRLIRFYARRW--GAKRVLLIGYSFGADVLPFAYNR 346 (456)
T ss_pred HHHHHHHHCCCceeeeehhhhhhccCCH---------HHHHHHHHHHHHHHHHhh--CcceEEEEeecccchhhHHHHHh
Confidence 3578899999999999954222222211 122678888888887764 45799999999999876555544
Q ss_pred CCCeeEEEEEcCCcCCcc---cccchhhhhccCCCCCCccccccCChhhhhhcCC-CcEEEEecCCC--CCCChHHHHHH
Q 008873 433 FPDVFQCAVSGAPVTSWD---GYDTFYTEKYMGLPSEDPVGYEYSSVMHHVHKMK-GKLLLVHGMID--ENVHFRHTARL 506 (550)
Q Consensus 433 ~~~~~~~~v~~~~~~~~~---~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~-~P~lii~G~~D--~~v~~~~~~~~ 506 (550)
-|...+..|......... .|. +-.+.++|...+. .......+.++. ..+..|+|.+| +.||-
T Consensus 347 L~~~~r~~v~~~~ll~l~~~~~fe-~~v~gWlg~~~~g-----~~~~~~~~~~l~~~~v~CiYG~~e~d~~Cp~------ 414 (456)
T COG3946 347 LPPATRQRVRMVSLLGLGRTADFE-ISVEGWLGMAGEG-----AGDVVPDIAKLPLARVQCIYGQEEKDTACPS------ 414 (456)
T ss_pred CCHHHHHHHHHHHHHhccccceEE-EEEeeeeccCCcC-----CCCcchhhhhCCcceeEEEecCccccccCCc------
Confidence 443222211111111000 011 1112233322221 123455666665 47788998654 55542
Q ss_pred HHHHHHcCCCeEEEEcCCCCCcCCCCCcHHHHHHHHHHHH
Q 008873 507 INALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFI 546 (550)
Q Consensus 507 ~~~l~~~~~~~~~~~~p~~~H~~~~~~~~~~~~~~~~~fl 546 (550)
|+. +.++.+..||+ |.| .++...+.+.|++=+
T Consensus 415 ---l~~--~~~~~v~lpGg-HHF--d~dy~~la~~il~~~ 446 (456)
T COG3946 415 ---LKA--KGVDTVKLPGG-HHF--DGDYEKLAKAILQGM 446 (456)
T ss_pred ---chh--hcceeEecCCC-ccc--CccHHHHHHHHHHHH
Confidence 222 23566778885 545 234555566666543
No 277
>KOG2565 consensus Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=96.70 E-value=0.0066 Score=57.04 Aligned_cols=119 Identities=13% Similarity=0.077 Sum_probs=77.8
Q ss_pred CCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhC---C------cEEEEECCCCCCCCc
Q 008873 307 DGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSK---G------ILVWKLDNRGTARRG 377 (550)
Q Consensus 307 ~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~---G------~~vv~~d~rG~g~~~ 377 (550)
.|..|+.....|+..+...+.+|+++ +||-|++.. +.+ -+...|..- | +.|++|..+|.|.|.
T Consensus 132 eGL~iHFlhvk~p~~k~~k~v~PlLl-~HGwPGsv~--EFy-----kfIPlLT~p~~hg~~~d~~FEVI~PSlPGygwSd 203 (469)
T KOG2565|consen 132 EGLKIHFLHVKPPQKKKKKKVKPLLL-LHGWPGSVR--EFY-----KFIPLLTDPKRHGNESDYAFEVIAPSLPGYGWSD 203 (469)
T ss_pred cceeEEEEEecCCccccCCcccceEE-ecCCCchHH--HHH-----hhhhhhcCccccCCccceeEEEeccCCCCcccCc
Confidence 68889999888876544445567655 799999843 222 124445432 3 789999999998775
Q ss_pred hhhHHHHhhccCCCchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEE
Q 008873 378 LKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVS 442 (550)
Q Consensus 378 ~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~ 442 (550)
..-... + ....+...++-|.-+ +.-++..|-|.-+|..++..++..+|+.+.+.=+
T Consensus 204 ~~sk~G----F---n~~a~ArvmrkLMlR--Lg~nkffiqGgDwGSiI~snlasLyPenV~GlHl 259 (469)
T KOG2565|consen 204 APSKTG----F---NAAATARVMRKLMLR--LGYNKFFIQGGDWGSIIGSNLASLYPENVLGLHL 259 (469)
T ss_pred CCccCC----c---cHHHHHHHHHHHHHH--hCcceeEeecCchHHHHHHHHHhhcchhhhHhhh
Confidence 432211 1 122333444444322 2347899999999999999999999987666433
No 278
>KOG2182 consensus Hydrolytic enzymes of the alpha/beta hydrolase fold [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=96.66 E-value=0.0083 Score=58.86 Aligned_cols=117 Identities=18% Similarity=0.215 Sum_probs=79.0
Q ss_pred CceEEEEEcC-CCCceeecccccccc-hhHhHHHHhCCcEEEEECCCCCCCCc---hhhHHHHhhccCCCchHHHHHHHH
Q 008873 327 PYKTLISVYG-GPCVQLVCDSWINTV-DMRAQYLRSKGILVWKLDNRGTARRG---LKFEASIKHNCGRIDAEDQLTGAE 401 (550)
Q Consensus 327 ~~P~vv~~hG-g~~~~~~~~~~~~~~-~~~~~~l~~~G~~vv~~d~rG~g~~~---~~~~~~~~~~~~~~~~~D~~~~~~ 401 (550)
.-|+.+++-| ||.. +.|.... ..+.++..+.|-.|+...+|=.|.+- ..-...+..--....+.|+...|+
T Consensus 85 ~gPiFLmIGGEgp~~----~~wv~~~~~~~~~~AkkfgA~v~~lEHRFYG~S~P~~~~st~nlk~LSs~QALaDla~fI~ 160 (514)
T KOG2182|consen 85 GGPIFLMIGGEGPES----DKWVGNENLTWLQWAKKFGATVFQLEHRFYGQSSPIGDLSTSNLKYLSSLQALADLAEFIK 160 (514)
T ss_pred CCceEEEEcCCCCCC----CCccccCcchHHHHHHHhCCeeEEeeeeccccCCCCCCCcccchhhhhHHHHHHHHHHHHH
Confidence 3488888755 3332 3452222 23456667899999999999777431 111111111111234788899988
Q ss_pred HHHHc-CCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcC
Q 008873 402 WLIKQ-GLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVT 447 (550)
Q Consensus 402 ~l~~~-~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~ 447 (550)
.+..+ +.-+..+.+.+|.||-|.+++|+-..+|+++.++|+.+++.
T Consensus 161 ~~n~k~n~~~~~~WitFGgSYsGsLsAW~R~~yPel~~GsvASSapv 207 (514)
T KOG2182|consen 161 AMNAKFNFSDDSKWITFGGSYSGSLSAWFREKYPELTVGSVASSAPV 207 (514)
T ss_pred HHHhhcCCCCCCCeEEECCCchhHHHHHHHHhCchhheeecccccce
Confidence 88877 34566699999999999999999999999998888876543
No 279
>KOG1282 consensus Serine carboxypeptidases (lysosomal cathepsin A) [Posttranslational modification, protein turnover, chaperones; Amino acid transport and metabolism]
Probab=96.65 E-value=0.02 Score=57.05 Aligned_cols=145 Identities=17% Similarity=0.164 Sum_probs=84.7
Q ss_pred eEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccc---cccchh--HhHHHH------hCCcEEEE
Q 008873 299 DIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSW---INTVDM--RAQYLR------SKGILVWK 367 (550)
Q Consensus 299 ~~~~~~~~~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~---~~~~~~--~~~~l~------~~G~~vv~ 367 (550)
-.+.+....+..+.+|++..... ++..|+||++-|||+...+...+ +| +.. ....|. .+--.++.
T Consensus 47 GYv~v~~~~~~~LFYwf~eS~~~---P~~dPlvLWLnGGPGCSSl~G~~~E~GP-f~v~~~G~tL~~N~ySWnk~aNiLf 122 (454)
T KOG1282|consen 47 GYVTVNESEGRQLFYWFFESENN---PETDPLVLWLNGGPGCSSLGGLFEENGP-FRVKYNGKTLYLNPYSWNKEANILF 122 (454)
T ss_pred ceEECCCCCCceEEEEEEEccCC---CCCCCEEEEeCCCCCccchhhhhhhcCC-eEEcCCCCcceeCCccccccccEEE
Confidence 44566556788999999876543 25569999999999987543221 11 000 000111 11245777
Q ss_pred ECCC-CCCCCchhhHHHHhhccCCCchHHHHHH-HHHHHHcCCCCCCceEEEEechhHHHHHHHHh----hCC------C
Q 008873 368 LDNR-GTARRGLKFEASIKHNCGRIDAEDQLTG-AEWLIKQGLAKVGHIGLYGWSYGGYLSAITLA----RFP------D 435 (550)
Q Consensus 368 ~d~r-G~g~~~~~~~~~~~~~~~~~~~~D~~~~-~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~----~~~------~ 435 (550)
+|.+ |.|.|=.. .......-.....+|...+ .+|+.+.|.-..+.+.|.|-||+|+.+-.+|. .+. -
T Consensus 123 Ld~PvGvGFSYs~-~~~~~~~~D~~~A~d~~~FL~~wf~kfPey~~~~fyI~GESYAG~YVP~La~~I~~~N~~~~~~~i 201 (454)
T KOG1282|consen 123 LDQPVGVGFSYSN-TSSDYKTGDDGTAKDNYEFLQKWFEKFPEYKSNDFYIAGESYAGHYVPALAQEILKGNKKCCKPNI 201 (454)
T ss_pred EecCCcCCccccC-CCCcCcCCcHHHHHHHHHHHHHHHHhChhhcCCCeEEecccccceehHHHHHHHHhccccccCCcc
Confidence 7766 44433100 0000000111234555554 56777777777789999999999976655443 221 2
Q ss_pred eeEEEEEcCCcCC
Q 008873 436 VFQCAVSGAPVTS 448 (550)
Q Consensus 436 ~~~~~v~~~~~~~ 448 (550)
-+++.+++.|++|
T Consensus 202 NLkG~~IGNg~td 214 (454)
T KOG1282|consen 202 NLKGYAIGNGLTD 214 (454)
T ss_pred cceEEEecCcccC
Confidence 4799999999876
No 280
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=96.64 E-value=0.5 Score=49.91 Aligned_cols=152 Identities=11% Similarity=0.105 Sum_probs=82.5
Q ss_pred eeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEE-eecCceeeccCccccCCCCCccCCCc-EEEEEccCCc
Q 008873 89 YLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILV-EELDSWVNLHDCFTPLDKGVTKYSGG-FIWASEKTGF 166 (550)
Q Consensus 89 ~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~g~ 166 (550)
.+...+++.||+.+++..+. +.|-+++.+.+.....+. ...+. .. . ..+|.+ |+..+.-+|.
T Consensus 98 p~r~~~v~g~g~~iaagsdD----~~vK~~~~~D~s~~~~lrgh~apV-l~----l-------~~~p~~~fLAvss~dG~ 161 (933)
T KOG1274|consen 98 PIRDLAVSGSGKMIAAGSDD----TAVKLLNLDDSSQEKVLRGHDAPV-LQ----L-------SYDPKGNFLAVSSCDGK 161 (933)
T ss_pred cceEEEEecCCcEEEeecCc----eeEEEEeccccchheeecccCCce-ee----e-------eEcCCCCEEEEEecCce
Confidence 45567899999999887644 347777777665443333 22221 00 1 123444 7777766674
Q ss_pred cEEEEEeCCCce-eecccc----cCe---EEEEEEeEeecCCEEEEEEcCCCCceeEEEEEEeCCCCCCCCCCCeeeCC-
Q 008873 167 RHLYLHDINGTC-LGPITE----GDW---MVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTN- 237 (550)
Q Consensus 167 ~~l~~~~~~~~~-~~~lT~----~~~---~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~~v~~~~~g~~~~~~~~~lt~- 237 (550)
++++++..+. ..-||. .+. .....+.|+|+|..+++...++. ..+|+-. +.. ..-.|..
T Consensus 162 --v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~---Vkvy~r~----~we---~~f~Lr~~ 229 (933)
T KOG1274|consen 162 --VQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNT---VKVYSRK----GWE---LQFKLRDK 229 (933)
T ss_pred --EEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCe---EEEEccC----Cce---eheeeccc
Confidence 5555554432 222321 111 12223469999988888877653 4555322 221 0111111
Q ss_pred --CCceEEEEECCCCCEEEEeecCCCCCCEEEEEEcC
Q 008873 238 --GKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQ 272 (550)
Q Consensus 238 --~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~ 272 (550)
...+..+.|||+|+||+....+ .+|.+.+.+
T Consensus 230 ~~ss~~~~~~wsPnG~YiAAs~~~----g~I~vWnv~ 262 (933)
T KOG1274|consen 230 LSSSKFSDLQWSPNGKYIAASTLD----GQILVWNVD 262 (933)
T ss_pred ccccceEEEEEcCCCcEEeeeccC----CcEEEEecc
Confidence 1124556899999999766443 356666654
No 281
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=96.62 E-value=0.0017 Score=63.27 Aligned_cols=68 Identities=16% Similarity=0.096 Sum_probs=44.6
Q ss_pred ceEEEcCCCCeEEEEEEeCCCCCeEEEeecCCCCCCCCCcccccCCCCCCCCCeEEEEEEECCCCceEEEEcccCCCCCC
Q 008873 5 TGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQN 84 (550)
Q Consensus 5 ~~~~wSPdg~~lay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~ 84 (550)
..+.+||||++||.++.|. -|.|+|.++.+..-+- .
T Consensus 294 n~f~FS~DG~~LA~VSqDG------------------------------------fLRvF~fdt~eLlg~m--------k 329 (636)
T KOG2394|consen 294 NEFAFSPDGKYLATVSQDG------------------------------------FLRIFDFDTQELLGVM--------K 329 (636)
T ss_pred cceeEcCCCceEEEEecCc------------------------------------eEEEeeccHHHHHHHH--------H
Confidence 5788999999999997762 3678888876553220 0
Q ss_pred CCCceeEEEEECCCCeEEEEEEecCCCceEEEEE
Q 008873 85 YDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKF 118 (550)
Q Consensus 85 ~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~ 118 (550)
.-=+.+..++||||||+|+.--.. +--.||.+
T Consensus 330 SYFGGLLCvcWSPDGKyIvtGGED--DLVtVwSf 361 (636)
T KOG2394|consen 330 SYFGGLLCVCWSPDGKYIVTGGED--DLVTVWSF 361 (636)
T ss_pred hhccceEEEEEcCCccEEEecCCc--ceEEEEEe
Confidence 111245678999999998764222 23345554
No 282
>KOG3967 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.61 E-value=0.025 Score=48.87 Aligned_cols=102 Identities=25% Similarity=0.264 Sum_probs=57.9
Q ss_pred CCceEEEEEcCCCCceeecccccc-----------cchhHhHHHHhCCcEEEEECCCCCCCCchhhHHHHhhc--cCCCc
Q 008873 326 PPYKTLISVYGGPCVQLVCDSWIN-----------TVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHN--CGRID 392 (550)
Q Consensus 326 ~~~P~vv~~hGg~~~~~~~~~~~~-----------~~~~~~~~l~~~G~~vv~~d~rG~g~~~~~~~~~~~~~--~~~~~ 392 (550)
.+..++|++||.+.... ..|.- .--++.+...+.||-|+..|.-- .+.|.+..... +-...
T Consensus 99 ~~~kLlVLIHGSGvVrA--GQWARrLIIN~~Ld~GTQiPyi~rAv~~Gygviv~N~N~----~~kfye~k~np~kyirt~ 172 (297)
T KOG3967|consen 99 NPQKLLVLIHGSGVVRA--GQWARRLIINEDLDSGTQIPYIKRAVAEGYGVIVLNPNR----ERKFYEKKRNPQKYIRTP 172 (297)
T ss_pred CccceEEEEecCceEec--chHhhhhhhccccccCCcChHHHHHHHcCCcEEEeCCch----hhhhhhcccCcchhccch
Confidence 34468999999544322 12210 11123555678899998888541 11122111110 01122
Q ss_pred hHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhCCC
Q 008873 393 AEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPD 435 (550)
Q Consensus 393 ~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~ 435 (550)
.+.......+++.. ..+..|+++.||+||++++-++.+.|+
T Consensus 173 veh~~yvw~~~v~p--a~~~sv~vvahsyGG~~t~~l~~~f~~ 213 (297)
T KOG3967|consen 173 VEHAKYVWKNIVLP--AKAESVFVVAHSYGGSLTLDLVERFPD 213 (297)
T ss_pred HHHHHHHHHHHhcc--cCcceEEEEEeccCChhHHHHHHhcCC
Confidence 33444444444332 356789999999999999999998874
No 283
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=96.59 E-value=0.93 Score=51.35 Aligned_cols=84 Identities=11% Similarity=0.128 Sum_probs=41.1
Q ss_pred EEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCceeec----cCccccCCCCCccCCCc-EEEEEccCCc
Q 008873 92 RVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNL----HDCFTPLDKGVTKYSGG-FIWASEKTGF 166 (550)
Q Consensus 92 ~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~----~~~~~~~~~~~~~~~~~-~~~~s~~~g~ 166 (550)
.++++|++..++... .. ..+|+.++..+|....+.......-.+. ...+.. +.....++++ .+|+++. +.
T Consensus 687 gVa~dp~~g~LyVad-~~--~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~-P~GIavspdG~~LYVADs-~n 761 (1057)
T PLN02919 687 DVCFEPVNEKVYIAM-AG--QHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQ-PSGISLSPDLKELYIADS-ES 761 (1057)
T ss_pred EEEEecCCCeEEEEE-CC--CCeEEEEECCCCeEEEEecCCccccCCCCccccccccC-ccEEEEeCCCCEEEEEEC-CC
Confidence 578899655443332 22 2358999998887654432100000000 000100 1111234543 5667665 34
Q ss_pred cEEEEEeCCCceee
Q 008873 167 RHLYLHDINGTCLG 180 (550)
Q Consensus 167 ~~l~~~~~~~~~~~ 180 (550)
..|.+++++++..+
T Consensus 762 ~~Irv~D~~tg~~~ 775 (1057)
T PLN02919 762 SSIRALDLKTGGSR 775 (1057)
T ss_pred CeEEEEECCCCcEE
Confidence 57888887765443
No 284
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=96.51 E-value=0.069 Score=56.93 Aligned_cols=161 Identities=6% Similarity=-0.074 Sum_probs=83.1
Q ss_pred CCCceeEEEEECCCCeEEEEEEecCCCceEEEEEEC------C--CCc--------eE-EEEEeecCceeeccCccccCC
Q 008873 85 YDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDI------K--TGQ--------RK-VILVEELDSWVNLHDCFTPLD 147 (550)
Q Consensus 85 ~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~------~--~g~--------~~-~l~~~~~~~~~~~~~~~~~~~ 147 (550)
.....+..++|||||++++.-++.. .-.||.... . +|. +. .|..++.+ ..-+
T Consensus 67 ~h~~sv~CVR~S~dG~~lAsGSDD~--~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~D--------V~Dv- 135 (942)
T KOG0973|consen 67 DHDGSVNCVRFSPDGSYLASGSDDR--LVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSD--------VLDV- 135 (942)
T ss_pred cccCceeEEEECCCCCeEeeccCcc--eEEEeeecccCCcccccccccccccceeeEEEEEecCCCc--------ccee-
Confidence 3456788899999999998876542 234555552 1 111 11 11111111 0001
Q ss_pred CCCccCCCcEEEEEccCCccEEEEEeCCCcee-ecccccCeEEEEEEeEeecCCEEEEEEcCCCCceeEEEEEEeCCCCC
Q 008873 148 KGVTKYSGGFIWASEKTGFRHLYLHDINGTCL-GPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWN 226 (550)
Q Consensus 148 ~~~~~~~~~~~~~s~~~g~~~l~~~~~~~~~~-~~lT~~~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~~v~~~~~g~ 226 (550)
.|+|++.+++|-.-. ..+.+++..+-+. +.|-.+.-.|.+.. |+|-|++++-.+.+. ...+|+.+- -|
T Consensus 136 ---~Wsp~~~~lvS~s~D-nsViiwn~~tF~~~~vl~~H~s~VKGvs-~DP~Gky~ASqsdDr---tikvwrt~d--w~- 204 (942)
T KOG0973|consen 136 ---NWSPDDSLLVSVSLD-NSVIIWNAKTFELLKVLRGHQSLVKGVS-WDPIGKYFASQSDDR---TLKVWRTSD--WG- 204 (942)
T ss_pred ---ccCCCccEEEEeccc-ceEEEEccccceeeeeeecccccccceE-ECCccCeeeeecCCc---eEEEEEccc--ce-
Confidence 477877666654321 2355555444332 23333344455554 999998777555443 266776331 11
Q ss_pred CCCCCCeeeCCC-------CceEEEEECCCCCEEEEeecCCCCCCEEEEEEc
Q 008873 227 HTLEAPVKLTNG-------KGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSL 271 (550)
Q Consensus 227 ~~~~~~~~lt~~-------~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~ 271 (550)
..+.++.. ......+|||||++|+...+--..-+.+.+++.
T Consensus 205 ----i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR 252 (942)
T KOG0973|consen 205 ----IEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIER 252 (942)
T ss_pred ----eeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEec
Confidence 12233321 123445899999998765443233355666554
No 285
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=96.41 E-value=0.45 Score=44.07 Aligned_cols=19 Identities=32% Similarity=0.419 Sum_probs=14.2
Q ss_pred ceEEEcCCCCeEEEEEEeC
Q 008873 5 TGYWWSLDSKFIAFTQVDS 23 (550)
Q Consensus 5 ~~~~wSPdg~~lay~~~~~ 23 (550)
.+-.|||||.-|.-.+-++
T Consensus 53 kgckWSPDGSciL~~sedn 71 (406)
T KOG2919|consen 53 KGCKWSPDGSCILSLSEDN 71 (406)
T ss_pred ccceeCCCCceEEeecccC
Confidence 4668999999987655443
No 286
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=96.39 E-value=0.099 Score=48.31 Aligned_cols=36 Identities=11% Similarity=0.241 Sum_probs=22.5
Q ss_pred CceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCC
Q 008873 87 EEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTG 123 (550)
Q Consensus 87 ~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g 123 (550)
.-.++..+|||||+.|+.++.-.- +-.+|.+..+.|
T Consensus 91 ~agls~~~WSPdgrhiL~tseF~l-riTVWSL~t~~~ 126 (447)
T KOG4497|consen 91 QAGLSSISWSPDGRHILLTSEFDL-RITVWSLNTQKG 126 (447)
T ss_pred CCcceeeeECCCcceEeeeeccee-EEEEEEecccee
Confidence 445678899999998777654322 223565554433
No 287
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171. This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.
Probab=96.38 E-value=0.021 Score=60.60 Aligned_cols=57 Identities=11% Similarity=0.025 Sum_probs=43.1
Q ss_pred EEEEEECCCCceEEEEcccCCCCCCCCCceeEEEEECCCCeEEEEEEecCC--CceEEEEEECCCCc
Q 008873 60 RLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQ--TKLKVLKFDIKTGQ 124 (550)
Q Consensus 60 ~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~wspDg~~i~~~~~r~~--~~~~l~~~~~~~g~ 124 (550)
+|.+.|.++...+.+.+ .....+.+|+|||||+.|+|+..-+. ++..||+.++.+..
T Consensus 330 ~L~~~D~dG~n~~~ve~--------~~~~~i~sP~~SPDG~~vAY~ts~e~~~g~s~vYv~~L~t~~ 388 (912)
T TIGR02171 330 NLAYIDYTKGASRAVEI--------EDTISVYHPDISPDGKKVAFCTGIEGLPGKSSVYVRNLNASG 388 (912)
T ss_pred eEEEEecCCCCceEEEe--------cCCCceecCcCCCCCCEEEEEEeecCCCCCceEEEEehhccC
Confidence 78999999988776633 22456778999999999999444443 56789999998754
No 288
>PLN02209 serine carboxypeptidase
Probab=96.35 E-value=0.019 Score=57.55 Aligned_cols=146 Identities=17% Similarity=0.161 Sum_probs=80.1
Q ss_pred eEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccc---cccc-hhH-----hHHHH------hCCc
Q 008873 299 DIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSW---INTV-DMR-----AQYLR------SKGI 363 (550)
Q Consensus 299 ~~~~~~~~~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~---~~~~-~~~-----~~~l~------~~G~ 363 (550)
..+.+....+..+..|++..... +...|+|+++-|||++......| ++.. ..- ...+. .+-.
T Consensus 42 Gy~~v~~~~~~~lf~~f~es~~~---~~~~Pl~lWlnGGPG~SS~~g~f~e~GP~~~~~~~~~~~~~~l~~n~~sW~~~a 118 (437)
T PLN02209 42 GYIGIGEEENVQFFYYFIKSDKN---PQEDPLIIWLNGGPGCSCLSGLFFENGPLALKNKVYNGSVPSLVSTTYSWTKTA 118 (437)
T ss_pred EEEEecCCCCeEEEEEEEecCCC---CCCCCEEEEECCCCcHHHhhhHHHhcCCceeccCCCCCCcccceeCCCchhhcC
Confidence 34555444456788887765532 25679999999999976532211 1100 000 00111 1235
Q ss_pred EEEEECCC-CCCCCchhhHHHHhhccCCCchHHHHHHHHHHH-HcCCCCCCceEEEEechhHHHHHHHHhh----C----
Q 008873 364 LVWKLDNR-GTARRGLKFEASIKHNCGRIDAEDQLTGAEWLI-KQGLAKVGHIGLYGWSYGGYLSAITLAR----F---- 433 (550)
Q Consensus 364 ~vv~~d~r-G~g~~~~~~~~~~~~~~~~~~~~D~~~~~~~l~-~~~~~d~~~i~i~G~S~GG~~a~~~~~~----~---- 433 (550)
.++.+|.+ |.|.|-..... .... -..+.+|+..+++... ..+.....++.|+|.||||..+-.++.. .
T Consensus 119 nllfiDqPvGtGfSy~~~~~-~~~~-~~~~a~~~~~fl~~f~~~~p~~~~~~~yi~GESYaG~yvP~~a~~i~~~~~~~~ 196 (437)
T PLN02209 119 NIIFLDQPVGSGFSYSKTPI-ERTS-DTSEVKKIHEFLQKWLIKHPQFLSNPFYVVGDSYSGMIVPALVHEISKGNYICC 196 (437)
T ss_pred cEEEecCCCCCCccCCCCCC-CccC-CHHHHHHHHHHHHHHHHhCccccCCCEEEEecCcCceehHHHHHHHHhhccccc
Confidence 78999944 66654211000 0000 0112455555555433 3455556789999999999866555432 1
Q ss_pred --CCeeEEEEEcCCcCCc
Q 008873 434 --PDVFQCAVSGAPVTSW 449 (550)
Q Consensus 434 --~~~~~~~v~~~~~~~~ 449 (550)
+--+++++++.|.+|.
T Consensus 197 ~~~inl~Gi~igng~td~ 214 (437)
T PLN02209 197 NPPINLQGYVLGNPITHI 214 (437)
T ss_pred CCceeeeeEEecCcccCh
Confidence 1247899999998764
No 289
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=96.29 E-value=1.3 Score=43.83 Aligned_cols=184 Identities=13% Similarity=0.132 Sum_probs=88.6
Q ss_pred EEEEEECCCCceEEEEcccCCCCCCCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCceeec
Q 008873 60 RLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNL 139 (550)
Q Consensus 60 ~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~ 139 (550)
.+++.+++......+- ++-.....-+++||.|-+++. ...+++-+||-. +.+...|-.+... ..
T Consensus 40 sv~ir~i~~~~~~~iY--------tEH~~~vtVAkySPsG~yiAS--GD~sG~vRIWdt---t~~~hiLKnef~v-~a-- 103 (603)
T KOG0318|consen 40 SVIIRNIDNPASVDIY--------TEHAHQVTVAKYSPSGFYIAS--GDVSGKVRIWDT---TQKEHILKNEFQV-LA-- 103 (603)
T ss_pred EEEEEECCCccceeee--------ccccceeEEEEeCCCceEEee--cCCcCcEEEEec---cCcceeeeeeeee-cc--
Confidence 4567777766554332 122344566789999986643 444455455543 2222233222110 00
Q ss_pred cCccccCCCCCccCCCc--EEEEEccC-CccEEEEEeCCCceeecccccCeEEEEEEeEeecCCEEEEEEcCCCCceeEE
Q 008873 140 HDCFTPLDKGVTKYSGG--FIWASEKT-GFRHLYLHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHL 216 (550)
Q Consensus 140 ~~~~~~~~~~~~~~~~~--~~~~s~~~-g~~~l~~~~~~~~~~~~lT~~~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l 216 (550)
+ +... .+|+.|+ ++.+-+.. -+.|.|+.|.-+ -.-.+|.....+.... +-|..-.-..+..+++. ..+
T Consensus 104 G----~I~D-i~Wd~ds~RI~avGEGrerfg~~F~~DSG~-SvGei~GhSr~ins~~-~KpsRPfRi~T~sdDn~--v~f 174 (603)
T KOG0318|consen 104 G----PIKD-ISWDFDSKRIAAVGEGRERFGHVFLWDSGN-SVGEITGHSRRINSVD-FKPSRPFRIATGSDDNT--VAF 174 (603)
T ss_pred c----cccc-ceeCCCCcEEEEEecCccceeEEEEecCCC-ccceeeccceeEeeee-ccCCCceEEEeccCCCe--EEE
Confidence 0 0000 1466665 55555543 378899988422 1223333322222211 22222222222222221 112
Q ss_pred EEEEeCCCCCCCCCCCeeeCC-----CCceEEEEECCCCCEEEEeecCCCCCCEEEEEEcCCCceeEeccCC
Q 008873 217 YCAKLYPDWNHTLEAPVKLTN-----GKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLYEQ 283 (550)
Q Consensus 217 ~~v~~~~~g~~~~~~~~~lt~-----~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~~~~~l~~~ 283 (550)
|. | .|-++.. ....+.+.+||||+.++-+.++ ..++++|=.+|+++..|..+
T Consensus 175 fe------G-----PPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsD----gki~iyDGktge~vg~l~~~ 231 (603)
T KOG0318|consen 175 FE------G-----PPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSD----GKIYIYDGKTGEKVGELEDS 231 (603)
T ss_pred ee------C-----CCeeeeecccccccceeeEEECCCCCeEEEecCC----ccEEEEcCCCccEEEEecCC
Confidence 11 1 1111111 1135566799999988766554 47899998888887777754
No 290
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=96.24 E-value=1.4 Score=43.57 Aligned_cols=227 Identities=13% Similarity=0.074 Sum_probs=112.6
Q ss_pred EEEEEECCCCceEEEEcccCCCCCCCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEE--eecCcee
Q 008873 60 RLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILV--EELDSWV 137 (550)
Q Consensus 60 ~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~--~~~~~~~ 137 (550)
+++++|.++|....- ...- ....-...-+.||-|.++++.+... .|+..++ |+...+.-. ....+..
T Consensus 109 ~~~vwd~~sg~iv~s-f~~~----~q~~~~Wp~~k~s~~D~y~ARvv~~-----sl~i~e~-t~n~~~~p~~~lr~~gi~ 177 (561)
T COG5354 109 NVFVWDIASGMIVFS-FNGI----SQPYLGWPVLKFSIDDKYVARVVGS-----SLYIHEI-TDNIEEHPFKNLRPVGIL 177 (561)
T ss_pred ceeEEeccCceeEee-cccc----CCcccccceeeeeecchhhhhhccC-----eEEEEec-CCccccCchhhcccccee
Confidence 689999999976421 1100 1111122346899999987766422 3677766 443321110 0001111
Q ss_pred eccCccccCCCCCccCCCcEEEEE-ccCC---ccEEEEEeCCCceeecccccCeEEEEE-EeEeecCCEEEEEEcCC---
Q 008873 138 NLHDCFTPLDKGVTKYSGGFIWAS-EKTG---FRHLYLHDINGTCLGPITEGDWMVEQI-VGVNEASGQVYFTGTLD--- 209 (550)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~s-~~~g---~~~l~~~~~~~~~~~~lT~~~~~~~~~-~~~s~dg~~l~f~~~~~--- 209 (550)
.|+..+. -.++.+.+.+ +..| .-.|+.+.. +...+.-| -+.+.+. ..|.+.|+.|.+.....
T Consensus 178 ----dFsisP~---~n~~~la~~tPEk~~kpa~~~i~sIp~-~s~l~tk~--lfk~~~~qLkW~~~g~~ll~l~~t~~ks 247 (561)
T COG5354 178 ----DFSISPE---GNHDELAYWTPEKLNKPAMVRILSIPK-NSVLVTKN--LFKVSGVQLKWQVLGKYLLVLVMTHTKS 247 (561)
T ss_pred ----eEEecCC---CCCceEEEEccccCCCCcEEEEEEccC-CCeeeeee--eEeecccEEEEecCCceEEEEEEEeeec
Confidence 1222221 1233455544 3333 345666653 22222222 2333321 25889999988876532
Q ss_pred -CC--ceeEEEEEEeCCCCCCCCCCCeeeCCCCceEEEEECCCCCEEEEeecCCCCCCEEEEEEcCCCceeEeccCCCCC
Q 008873 210 -GP--LESHLYCAKLYPDWNHTLEAPVKLTNGKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLYEQPLT 286 (550)
Q Consensus 210 -~~--~~~~l~~v~~~~~g~~~~~~~~~lt~~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~~~~~l~~~~~~ 286 (550)
.. ++..||..++ .+.. -+..+--.+-.|++.|+|+++.++.++. ..|..+...++ .|...-.+.+...+
T Consensus 248 nKsyfgesnLyl~~~--~e~~---i~V~~~~~~pVhdf~W~p~S~~F~vi~g--~~pa~~s~~~l-r~Nl~~~~Pe~~rN 319 (561)
T COG5354 248 NKSYFGESNLYLLRI--TERS---IPVEKDLKDPVHDFTWEPLSSRFAVISG--YMPASVSVFDL-RGNLRFYFPEQKRN 319 (561)
T ss_pred ccceeccceEEEEee--cccc---cceeccccccceeeeecccCCceeEEec--ccccceeeccc-ccceEEecCCcccc
Confidence 11 2367888887 3321 1222211233899999999999887753 34567777777 34432222221111
Q ss_pred hhhhhcCCCCC-CeEEEEEcCCCcEEEEEEEcCCC
Q 008873 287 VPRIKRLQLEP-PDIVQIQANDGTVLYGALYKPDE 320 (550)
Q Consensus 287 ~~~~~~~~~~~-~~~~~~~~~~g~~l~~~~~~P~~ 320 (550)
. ..+.+ ...+-+...++.+-...++-|.+
T Consensus 320 T-----~~fsp~~r~il~agF~nl~gni~i~~~~~ 349 (561)
T COG5354 320 T-----IFFSPHERYILFAGFDNLQGNIEIFDPAG 349 (561)
T ss_pred c-----ccccCcccEEEEecCCccccceEEeccCC
Confidence 1 11222 23344445566555556666654
No 291
>PF05057 DUF676: Putative serine esterase (DUF676); InterPro: IPR007751 This domain, whose function is unknown, is found within a group of putative lipases.
Probab=96.22 E-value=0.0084 Score=54.31 Aligned_cols=21 Identities=29% Similarity=0.593 Sum_probs=18.3
Q ss_pred CCceEEEEechhHHHHHHHHh
Q 008873 411 VGHIGLYGWSYGGYLSAITLA 431 (550)
Q Consensus 411 ~~~i~i~G~S~GG~~a~~~~~ 431 (550)
..+|.++|||+||.++-+++.
T Consensus 77 ~~~IsfIgHSLGGli~r~al~ 97 (217)
T PF05057_consen 77 IRKISFIGHSLGGLIARYALG 97 (217)
T ss_pred cccceEEEecccHHHHHHHHH
Confidence 368999999999999987776
No 292
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=96.17 E-value=0.82 Score=50.81 Aligned_cols=107 Identities=13% Similarity=0.125 Sum_probs=55.2
Q ss_pred ceeEEEEECCCCeEEEEEEecCC-C-ceEEEEEECCCCceEEEEEeecCceeeccCccccCCCCCccCCCc-EEEEEcc-
Q 008873 88 EYLARVNWMHGNILTAQVLNRSQ-T-KLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYSGG-FIWASEK- 163 (550)
Q Consensus 88 ~~~~~~~wspDg~~i~~~~~r~~-~-~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~- 163 (550)
..-..++|-.||++++...-..+ + ...|-+.+.+ |+..-..+ + ...+....+|.|.| ++..+.+
T Consensus 210 d~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE-~----------v~gLe~~l~WrPsG~lIA~~q~~ 277 (928)
T PF04762_consen 210 DGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSE-P----------VDGLEGALSWRPSGNLIASSQRL 277 (928)
T ss_pred CCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccc-c----------CCCccCCccCCCCCCEEEEEEEc
Confidence 34567899999997765543222 2 2233333333 44222111 1 11122233566655 5555544
Q ss_pred CCccEEEEEeCCCceee----cccccCeEEEEEEeEeecCCEEEEEEc
Q 008873 164 TGFRHLYLHDINGTCLG----PITEGDWMVEQIVGVNEASGQVYFTGT 207 (550)
Q Consensus 164 ~g~~~l~~~~~~~~~~~----~lT~~~~~~~~~~~~s~dg~~l~f~~~ 207 (550)
.+...|..+..+|-.-. ++...+..+... .|+.|+..|++...
T Consensus 278 ~~~~~VvFfErNGLrhgeF~l~~~~~~~~v~~l-~Wn~ds~iLAv~~~ 324 (928)
T PF04762_consen 278 PDRHDVVFFERNGLRHGEFTLRFDPEEEKVIEL-AWNSDSEILAVWLE 324 (928)
T ss_pred CCCcEEEEEecCCcEeeeEecCCCCCCceeeEE-EECCCCCEEEEEec
Confidence 34466667776663211 222334445555 59999998887653
No 293
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171. This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.
Probab=96.06 E-value=0.066 Score=57.01 Aligned_cols=113 Identities=17% Similarity=0.145 Sum_probs=70.7
Q ss_pred cEEEEEccCCccEEEEEeCCCceeecc-cccCeEEEEEEeEeecCCEEEE-EEcCCCCceeEEEEEEeCCCCCCCCCCCe
Q 008873 156 GFIWASEKTGFRHLYLHDINGTCLGPI-TEGDWMVEQIVGVNEASGQVYF-TGTLDGPLESHLYCAKLYPDWNHTLEAPV 233 (550)
Q Consensus 156 ~~~~~s~~~g~~~l~~~~~~~~~~~~l-T~~~~~~~~~~~~s~dg~~l~f-~~~~~~~~~~~l~~v~~~~~g~~~~~~~~ 233 (550)
+++|+++..| +|.++|.+|...+.+ +.....+-.+. |||||++|+| ++-+.-.+...||+-++...++ .+.
T Consensus 320 kiAfv~~~~~--~L~~~D~dG~n~~~ve~~~~~~i~sP~-~SPDG~~vAY~ts~e~~~g~s~vYv~~L~t~~~----~~v 392 (912)
T TIGR02171 320 KLAFRNDVTG--NLAYIDYTKGASRAVEIEDTISVYHPD-ISPDGKKVAFCTGIEGLPGKSSVYVRNLNASGS----GLV 392 (912)
T ss_pred eEEEEEcCCC--eEEEEecCCCCceEEEecCCCceecCc-CCCCCCEEEEEEeecCCCCCceEEEEehhccCC----Cce
Confidence 4888887655 899999999888888 77766666554 9999999999 5545422346799999854454 444
Q ss_pred eeCCCC-ceEEEEECCCCCEEEEeecCCC-CC-------CEEEEEEcCCCc
Q 008873 234 KLTNGK-GKHVAVLDHNMRNFVDFHDSLD-SP-------PRILLCSLQDGS 275 (550)
Q Consensus 234 ~lt~~~-~~~~~~~s~dg~~l~~~~s~~~-~p-------~~l~~~~~~~g~ 275 (550)
.|.-+. .+-.--+..+|+..+.-.+++. .- ...|.+...+|+
T Consensus 393 kl~ve~aaiprwrv~e~gdt~ivyv~~a~nn~d~~~~~~~stw~v~f~~gk 443 (912)
T TIGR02171 393 KLPVENAAIPRWRVLENGDTVIVYVSDASNNKDDATFAAYSTWQVPFANGK 443 (912)
T ss_pred EeecccccccceEecCCCCeEEEEEcCCCCCcchhhhhhcceEEEEecCCC
Confidence 554331 1111134566655433333332 21 345666776665
No 294
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=96.06 E-value=0.022 Score=56.91 Aligned_cols=106 Identities=14% Similarity=0.246 Sum_probs=65.0
Q ss_pred eEEEcC-CCCeEEEEEEeCCCCCeEEEeecCCCCC----------CCCCcccccC-CCCCC----CCCeEEEEEEECCCC
Q 008873 6 GYWWSL-DSKFIAFTQVDSSEIPRFRIMHQGKSSV----------GSEAQEDHAY-PFAGA----SNVKVRLGVVSAAGG 69 (550)
Q Consensus 6 ~~~wSP-dg~~lay~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~y-~~~g~----~~~~~~l~~~d~~~~ 69 (550)
.+.|.| |-.+||-. .+++.+..+++...+..+. ....+..+++ |.+.+ ......|.+||+.++
T Consensus 632 Dl~WdPFD~~rLAVa-~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~ 710 (1012)
T KOG1445|consen 632 DLHWDPFDDERLAVA-TDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANA 710 (1012)
T ss_pred ecccCCCChHHeeec-ccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhh
Confidence 456776 55677764 5556666677666544421 1123334555 23222 233356778899988
Q ss_pred ceEEEEcccCCCCCCCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCc
Q 008873 70 PVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQ 124 (550)
Q Consensus 70 ~~~~l~~~~~~~~~~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~ 124 (550)
+.+.- + ..-...+..++|||||++++.+.+... |.+++..+++
T Consensus 711 ~~~~~-l-------~gHtdqIf~~AWSpdGr~~AtVcKDg~----~rVy~Prs~e 753 (1012)
T KOG1445|consen 711 KLYSR-L-------VGHTDQIFGIAWSPDGRRIATVCKDGT----LRVYEPRSRE 753 (1012)
T ss_pred hhhhe-e-------ccCcCceeEEEECCCCcceeeeecCce----EEEeCCCCCC
Confidence 66421 1 222346788999999999999886653 7777777765
No 295
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=96.02 E-value=0.076 Score=51.53 Aligned_cols=180 Identities=13% Similarity=0.125 Sum_probs=85.7
Q ss_pred EEEEEECCCCceE-EEEcccCCCCCCCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCceee
Q 008873 60 RLGVVSAAGGPVS-WMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVN 138 (550)
Q Consensus 60 ~l~~~d~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~ 138 (550)
-|.+||++||+.. .+.+ +.....+.+-||+.-++++-.- ...|...|+.+|+..+=....-..|..
T Consensus 281 ~lKlwDtETG~~~~~f~~----------~~~~~cvkf~pd~~n~fl~G~s---d~ki~~wDiRs~kvvqeYd~hLg~i~~ 347 (503)
T KOG0282|consen 281 FLKLWDTETGQVLSRFHL----------DKVPTCVKFHPDNQNIFLVGGS---DKKIRQWDIRSGKVVQEYDRHLGAILD 347 (503)
T ss_pred eeeeeccccceEEEEEec----------CCCceeeecCCCCCcEEEEecC---CCcEEEEeccchHHHHHHHhhhhheee
Confidence 4788999999765 3333 3345667899999644444211 124788888888743211111112222
Q ss_pred ccCccccCCCCCccCCCcEEEEEccCCccEEEEEeCCCceeecccccC-eEEEEEEeEeecCCEEEEEEcCCCCceeEEE
Q 008873 139 LHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTCLGPITEGD-WMVEQIVGVNEASGQVYFTGTLDGPLESHLY 217 (550)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~~~~~~~lT~~~-~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~ 217 (550)
+.|.+ .+..|+-.||. +.-.||-....- ..+.+.... .... .....|.++++.-.+..+ ...+|
T Consensus 348 ----i~F~~-----~g~rFissSDd-ks~riWe~~~~v-~ik~i~~~~~hsmP-~~~~~P~~~~~~aQs~dN---~i~if 412 (503)
T KOG0282|consen 348 ----ITFVD-----EGRRFISSSDD-KSVRIWENRIPV-PIKNIADPEMHTMP-CLTLHPNGKWFAAQSMDN---YIAIF 412 (503)
T ss_pred ----eEEcc-----CCceEeeeccC-ccEEEEEcCCCc-cchhhcchhhccCc-ceecCCCCCeehhhccCc---eEEEE
Confidence 22221 22235555554 333445443211 122222211 1111 224677777666554432 13344
Q ss_pred EEEeCCCCCCCCCCCeeeCC--CCc-eEEEEECCCCCEEEEeecCCCCCCEEEEEEcCCCc
Q 008873 218 CAKLYPDWNHTLEAPVKLTN--GKG-KHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGS 275 (550)
Q Consensus 218 ~v~~~~~g~~~~~~~~~lt~--~~~-~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~ 275 (550)
.+.. .- +....++... -.| ...+.|||||++|+.- +.-..++..|..+-+
T Consensus 413 s~~~--~~--r~nkkK~feGh~vaGys~~v~fSpDG~~l~SG----dsdG~v~~wdwkt~k 465 (503)
T KOG0282|consen 413 STVP--PF--RLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSG----DSDGKVNFWDWKTTK 465 (503)
T ss_pred eccc--cc--ccCHhhhhcceeccCceeeEEEcCCCCeEEee----cCCccEEEeechhhh
Confidence 3222 00 0001111110 012 3445899999987432 233578888875544
No 296
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=95.96 E-value=1.1 Score=42.05 Aligned_cols=166 Identities=13% Similarity=0.085 Sum_probs=92.2
Q ss_pred cEEEEEccCCccEEEEEeCCCcee-eccccc-CeEEEEEEeEeecCCEEEEEEcCCCCceeEEEEEEeCCCCCCCCCCCe
Q 008873 156 GFIWASEKTGFRHLYLHDINGTCL-GPITEG-DWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPV 233 (550)
Q Consensus 156 ~~~~~s~~~g~~~l~~~~~~~~~~-~~lT~~-~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~~v~~~~~g~~~~~~~~ 233 (550)
..+++..|.|.. ++++|..+++. ..++.. +.+...-..+|+||++||-+-++....+--|-+-+.. .+- .++.
T Consensus 18 ~avafaRRPG~~-~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~-~~~---~ri~ 92 (305)
T PF07433_consen 18 EAVAFARRPGTF-ALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAA-RGY---RRIG 92 (305)
T ss_pred eEEEEEeCCCcE-EEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECc-CCc---EEEe
Confidence 367777787854 66777766654 355544 4455555569999999998887643333333333541 111 1233
Q ss_pred eeCC-CCceEEEEECCCCCEEEEeecCCC-C-------------CCEEEEEEcCCCceeEeccCCCCChhhhhcCCCCCC
Q 008873 234 KLTN-GKGKHVAVLDHNMRNFVDFHDSLD-S-------------PPRILLCSLQDGSLVLPLYEQPLTVPRIKRLQLEPP 298 (550)
Q Consensus 234 ~lt~-~~~~~~~~~s~dg~~l~~~~s~~~-~-------------p~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~ 298 (550)
+.+. +-|-|.+.+.|||+.|++.-.... . -|.|..+|..+|+.+.+..- .+.++ ....
T Consensus 93 E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~L----p~~~~---~lSi 165 (305)
T PF07433_consen 93 EFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVEL----PPDLH---QLSI 165 (305)
T ss_pred EecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeec----Ccccc---ccce
Confidence 3332 234577789999988876433221 1 25666677777774433211 11111 1123
Q ss_pred eEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCC
Q 008873 299 DIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPC 339 (550)
Q Consensus 299 ~~~~~~~~~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~ 339 (550)
+.+.+.. +|..+.+.-|..+.. ..|-+|.+|....
T Consensus 166 RHLa~~~-~G~V~~a~Q~qg~~~-----~~~PLva~~~~g~ 200 (305)
T PF07433_consen 166 RHLAVDG-DGTVAFAMQYQGDPG-----DAPPLVALHRRGG 200 (305)
T ss_pred eeEEecC-CCcEEEEEecCCCCC-----ccCCeEEEEcCCC
Confidence 5555544 788788887776542 2344566666444
No 297
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=95.96 E-value=1.2 Score=40.34 Aligned_cols=147 Identities=12% Similarity=0.202 Sum_probs=72.3
Q ss_pred CceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCceeeccCccccCCCCCccCCCc-EEEEEccCC
Q 008873 87 EEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYSGG-FIWASEKTG 165 (550)
Q Consensus 87 ~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~g 165 (550)
.+.+.+++|||.|++++..+-... .-||. -..++...+...++..- +. +.. +|+.++ ++....|+-
T Consensus 61 krsVRsvAwsp~g~~La~aSFD~t--~~Iw~--k~~~efecv~~lEGHEn-EV-K~V-------aws~sG~~LATCSRDK 127 (312)
T KOG0645|consen 61 KRSVRSVAWSPHGRYLASASFDAT--VVIWK--KEDGEFECVATLEGHEN-EV-KCV-------AWSASGNYLATCSRDK 127 (312)
T ss_pred hheeeeeeecCCCcEEEEeeccce--EEEee--cCCCceeEEeeeecccc-ce-eEE-------EEcCCCCEEEEeeCCC
Confidence 357888999999998876653321 12333 23455444444322200 00 000 344444 444433433
Q ss_pred ccEEEEEeCC-Cce---eecccccCeEEEEEEeEeecCCEEEEEEcCCCCceeEEEEEEeCCCCCCCCCCCeeeCCCC-c
Q 008873 166 FRHLYLHDIN-GTC---LGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTNGK-G 240 (550)
Q Consensus 166 ~~~l~~~~~~-~~~---~~~lT~~~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~~v~~~~~g~~~~~~~~~lt~~~-~ 240 (550)
.+|+...+ +.+ .-.|+.+.-+|.... |.|.- -|+|++.-++. ..+|+-.. ++.=. -...|.... .
T Consensus 128 --SVWiWe~deddEfec~aVL~~HtqDVK~V~-WHPt~-dlL~S~SYDnT--Ik~~~~~~--dddW~--c~~tl~g~~~T 197 (312)
T KOG0645|consen 128 --SVWIWEIDEDDEFECIAVLQEHTQDVKHVI-WHPTE-DLLFSCSYDNT--IKVYRDED--DDDWE--CVQTLDGHENT 197 (312)
T ss_pred --eEEEEEecCCCcEEEEeeeccccccccEEE-EcCCc-ceeEEeccCCe--EEEEeecC--CCCee--EEEEecCccce
Confidence 34444332 222 345666555666655 88864 37777776553 67776543 22100 012222211 1
Q ss_pred eEEEEECCCCCEEEEe
Q 008873 241 KHVAVLDHNMRNFVDF 256 (550)
Q Consensus 241 ~~~~~~s~dg~~l~~~ 256 (550)
.-+.+|+++|.+|+-.
T Consensus 198 VW~~~F~~~G~rl~s~ 213 (312)
T KOG0645|consen 198 VWSLAFDNIGSRLVSC 213 (312)
T ss_pred EEEEEecCCCceEEEe
Confidence 3344788888776533
No 298
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=95.94 E-value=1.2 Score=44.87 Aligned_cols=184 Identities=13% Similarity=0.076 Sum_probs=96.5
Q ss_pred EEEEEEECCCCceEEEEcccCCCCCCCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCce-EEEEEeecCcee
Q 008873 59 VRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQR-KVILVEELDSWV 137 (550)
Q Consensus 59 ~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~-~~l~~~~~~~~~ 137 (550)
..+|+|+..++++.++.- .. ..+++++.|+++|+.|+.-...+ .|.+.|.+.-+. +.+.......+.
T Consensus 197 ~~vylW~~~s~~v~~l~~-------~~-~~~vtSv~ws~~G~~LavG~~~g----~v~iwD~~~~k~~~~~~~~h~~rvg 264 (484)
T KOG0305|consen 197 QSVYLWSASSGSVTELCS-------FG-EELVTSVKWSPDGSHLAVGTSDG----TVQIWDVKEQKKTRTLRGSHASRVG 264 (484)
T ss_pred ceEEEEecCCCceEEeEe-------cC-CCceEEEEECCCCCEEEEeecCC----eEEEEehhhccccccccCCcCceeE
Confidence 368999999999887732 12 67889999999999887765443 255556554332 222110111111
Q ss_pred eccCccccCCCCCccCCCcEEEEEccCCccEEEEEeCCCce--eecccccCeEEEEEEeEeecCCEEEEEEcCCCCceeE
Q 008873 138 NLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTC--LGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESH 215 (550)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~~~~--~~~lT~~~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~ 215 (550)
. + .|... .+..-.++| .|..+|....+ .+.+....-+|-... |++|++.++--++++. ..
T Consensus 265 ~-------l----aW~~~-~lssGsr~~--~I~~~dvR~~~~~~~~~~~H~qeVCgLk-ws~d~~~lASGgnDN~---~~ 326 (484)
T KOG0305|consen 265 S-------L----AWNSS-VLSSGSRDG--KILNHDVRISQHVVSTLQGHRQEVCGLK-WSPDGNQLASGGNDNV---VF 326 (484)
T ss_pred E-------E----eccCc-eEEEecCCC--cEEEEEEecchhhhhhhhcccceeeeeE-ECCCCCeeccCCCccc---eE
Confidence 0 0 23322 222222233 34444432211 122333455666654 9999987764444432 34
Q ss_pred EEEEEeCCCCCCCCCCCeeeCCC-CceEEEEECCCCCEEEEeecCCCCCCEEEEEEcCCCceeEec
Q 008873 216 LYCAKLYPDWNHTLEAPVKLTNG-KGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPL 280 (550)
Q Consensus 216 l~~v~~~~~g~~~~~~~~~lt~~-~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~~~~~l 280 (550)
|| +. .... ....++.- ..+-..+|+|--+-|+.+..+..+ ..|...+..+|+.+..+
T Consensus 327 Iw--d~--~~~~---p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D-~~i~fwn~~~g~~i~~v 384 (484)
T KOG0305|consen 327 IW--DG--LSPE---PKFTFTEHTAAVKALAWCPWQSGLLATGGGSAD-RCIKFWNTNTGARIDSV 384 (484)
T ss_pred ec--cC--CCcc---ccEEEeccceeeeEeeeCCCccCceEEcCCCcc-cEEEEEEcCCCcEeccc
Confidence 44 43 1211 23333332 224455888876667666554333 46777777777655433
No 299
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=95.91 E-value=1.2 Score=39.88 Aligned_cols=107 Identities=12% Similarity=0.098 Sum_probs=58.1
Q ss_pred EEEEEccCCccEEEEEeCCC----ceeeccccc---CeEEEEEEeEeecCCEEEEEEcCCCCceeEEEEEEeCCCCCCCC
Q 008873 157 FIWASEKTGFRHLYLHDING----TCLGPITEG---DWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTL 229 (550)
Q Consensus 157 ~~~~s~~~g~~~l~~~~~~~----~~~~~lT~~---~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~~v~~~~~g~~~~ 229 (550)
++...+..| +.|+.++-+ .+..+++.- +....... +|||+|+|+-.+.+.. ..||..+- . -
T Consensus 181 ml~a~nnkG--~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~-lSPd~k~lat~ssdkt---v~iwn~~~--~-~--- 248 (311)
T KOG0315|consen 181 MLAAANNKG--NCYVWRLLNHQTASELEPVHKFQAHNGHILRCL-LSPDVKYLATCSSDKT---VKIWNTDD--F-F--- 248 (311)
T ss_pred EEEEecCCc--cEEEEEccCCCccccceEhhheecccceEEEEE-ECCCCcEEEeecCCce---EEEEecCC--c-e---
Confidence 554544445 345555433 234555542 22333343 8999999887766543 56665442 1 0
Q ss_pred CCCeeeCCCCce-EEEEECCCCCEEEEeecCCCCCCEEEEEEcCCCceeEe
Q 008873 230 EAPVKLTNGKGK-HVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLP 279 (550)
Q Consensus 230 ~~~~~lt~~~~~-~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~~~~~ 279 (550)
+-..+++...++ =.++||.||+||+ +.++. .-+.+| +++.++++++
T Consensus 249 kle~~l~gh~rWvWdc~FS~dg~Ylv-Tassd-~~~rlW--~~~~~k~v~q 295 (311)
T KOG0315|consen 249 KLELVLTGHQRWVWDCAFSADGEYLV-TASSD-HTARLW--DLSAGKEVRQ 295 (311)
T ss_pred eeEEEeecCCceEEeeeeccCccEEE-ecCCC-Cceeec--ccccCceeee
Confidence 123455555444 4469999999875 43433 333555 4556765543
No 300
>COG4782 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.88 E-value=0.052 Score=51.40 Aligned_cols=108 Identities=18% Similarity=0.112 Sum_probs=64.8
Q ss_pred ceEEEEEcCCCCceeecccccccchhHhHHHHhCCc--EEEEECCCCCCC---CchhhHHHHhhccCCCchHHHHHHHHH
Q 008873 328 YKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGI--LVWKLDNRGTAR---RGLKFEASIKHNCGRIDAEDQLTGAEW 402 (550)
Q Consensus 328 ~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~--~vv~~d~rG~g~---~~~~~~~~~~~~~~~~~~~D~~~~~~~ 402 (550)
.-++||+||...+ |...-...++.....|+ ..|.+-++..|. |.-+-+. -.+...++...+++
T Consensus 116 k~vlvFvHGfNnt------f~dav~R~aqI~~d~g~~~~pVvFSWPS~g~l~~Yn~DreS------~~~Sr~aLe~~lr~ 183 (377)
T COG4782 116 KTVLVFVHGFNNT------FEDAVYRTAQIVHDSGNDGVPVVFSWPSRGSLLGYNYDRES------TNYSRPALERLLRY 183 (377)
T ss_pred CeEEEEEcccCCc------hhHHHHHHHHHHhhcCCCcceEEEEcCCCCeeeecccchhh------hhhhHHHHHHHHHH
Confidence 4699999995433 21111223455555553 344455543331 2211111 12236788899999
Q ss_pred HHHcCCCCCCceEEEEechhHHHHHHHHhh----C----CCeeEEEEEcCCcCCc
Q 008873 403 LIKQGLAKVGHIGLYGWSYGGYLSAITLAR----F----PDVFQCAVSGAPVTSW 449 (550)
Q Consensus 403 l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~----~----~~~~~~~v~~~~~~~~ 449 (550)
|.+.+. ..+|.|++||||.++++.++-+ . +.+|+-.|..+|=.|.
T Consensus 184 La~~~~--~~~I~ilAHSMGtwl~~e~LrQLai~~~~~l~~ki~nViLAaPDiD~ 236 (377)
T COG4782 184 LATDKP--VKRIYLLAHSMGTWLLMEALRQLAIRADRPLPAKIKNVILAAPDIDV 236 (377)
T ss_pred HHhCCC--CceEEEEEecchHHHHHHHHHHHhccCCcchhhhhhheEeeCCCCCh
Confidence 998764 4689999999999999877643 1 2346777777775553
No 301
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=95.81 E-value=1.2 Score=39.05 Aligned_cols=199 Identities=16% Similarity=0.217 Sum_probs=96.6
Q ss_pred CceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceE----EEEEeecCceeeccCccccCCCCCccCCCcEEEEEc
Q 008873 87 EEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRK----VILVEELDSWVNLHDCFTPLDKGVTKYSGGFIWASE 162 (550)
Q Consensus 87 ~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~----~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 162 (550)
.+.+...+|||+|.+|+.-++... -.+...+.++-+.. .+.-.. .. + ....+++.+ +.++-+..|-
T Consensus 89 kgsiyc~~ws~~geliatgsndk~--ik~l~fn~dt~~~~g~dle~nmhd-gt-i---rdl~fld~~---~s~~~il~s~ 158 (350)
T KOG0641|consen 89 KGSIYCTAWSPCGELIATGSNDKT--IKVLPFNADTCNATGHDLEFNMHD-GT-I---RDLAFLDDP---ESGGAILASA 158 (350)
T ss_pred CccEEEEEecCccCeEEecCCCce--EEEEecccccccccCcceeeeecC-Cc-e---eeeEEecCC---CcCceEEEec
Confidence 456777899999999988765532 12333344332211 111110 00 0 012233211 2344566666
Q ss_pred cCCccEEEEEeCCCce-eecccccCeEEEEEEeEeecCCEEEEEEcCCCCceeEEEEEEeCCCCCCCCCCCeeeC---CC
Q 008873 163 KTGFRHLYLHDINGTC-LGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLT---NG 238 (550)
Q Consensus 163 ~~g~~~l~~~~~~~~~-~~~lT~~~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~~v~~~~~g~~~~~~~~~lt---~~ 238 (550)
..|--.||+.|-..|+ ...++....++-....|+ | ..+.++..+.. ...|-+.+ ... +..|- .+
T Consensus 159 gagdc~iy~tdc~~g~~~~a~sghtghilalyswn--~-~m~~sgsqdkt--irfwdlrv--~~~-----v~~l~~~~~~ 226 (350)
T KOG0641|consen 159 GAGDCKIYITDCGRGQGFHALSGHTGHILALYSWN--G-AMFASGSQDKT--IRFWDLRV--NSC-----VNTLDNDFHD 226 (350)
T ss_pred CCCcceEEEeecCCCCcceeecCCcccEEEEEEec--C-cEEEccCCCce--EEEEeeec--cce-----eeeccCcccC
Confidence 6677789998854443 445554444554444453 3 45555554432 23332222 110 11111 01
Q ss_pred Cc-----eEEEEECCCCCEEEEeecCCCCCCEEEEEEcCCCceeEeccCCCCChhhhhcCCCCCCeEEEEEcCCCcEEEE
Q 008873 239 KG-----KHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLYEQPLTVPRIKRLQLEPPDIVQIQANDGTVLYG 313 (550)
Q Consensus 239 ~~-----~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~ 313 (550)
.| ...+.+.|.|+.|+--..+ +.-.++|+..|+.+++..+.+. .+....+.+......+..-...|..
T Consensus 227 ~glessavaav~vdpsgrll~sg~~d----ssc~lydirg~r~iq~f~phsa---dir~vrfsp~a~yllt~syd~~ikl 299 (350)
T KOG0641|consen 227 GGLESSAVAAVAVDPSGRLLASGHAD----SSCMLYDIRGGRMIQRFHPHSA---DIRCVRFSPGAHYLLTCSYDMKIKL 299 (350)
T ss_pred CCcccceeEEEEECCCcceeeeccCC----CceEEEEeeCCceeeeeCCCcc---ceeEEEeCCCceEEEEecccceEEE
Confidence 12 3445688999876533322 3566778878877776665432 3333444444444444444444444
Q ss_pred E
Q 008873 314 A 314 (550)
Q Consensus 314 ~ 314 (550)
.
T Consensus 300 t 300 (350)
T KOG0641|consen 300 T 300 (350)
T ss_pred e
Confidence 4
No 302
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=95.79 E-value=4.8 Score=45.83 Aligned_cols=122 Identities=7% Similarity=0.067 Sum_probs=63.0
Q ss_pred EEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCc--eeecc--C-ccccCCCCCccCC-CcEEEEEccC
Q 008873 91 ARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDS--WVNLH--D-CFTPLDKGVTKYS-GGFIWASEKT 164 (550)
Q Consensus 91 ~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~--~~~~~--~-~~~~~~~~~~~~~-~~~~~~s~~~ 164 (550)
..+++.++|..|+.. +... ..|.+++..++..+.+......+ +.... . .....+.....++ ++.+|+++.
T Consensus 627 ~GIavd~~gn~LYVa-Dt~n--~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~- 702 (1057)
T PLN02919 627 QGLAYNAKKNLLYVA-DTEN--HALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMA- 702 (1057)
T ss_pred cEEEEeCCCCEEEEE-eCCC--ceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEEC-
Confidence 446788887765444 3332 25888898888776664321000 00000 0 0000011112344 456667654
Q ss_pred CccEEEEEeCCCceeeccccc--------C------e-EEEEEEeEeecCCEEEEEEcCCCCceeEEEEEEe
Q 008873 165 GFRHLYLHDINGTCLGPITEG--------D------W-MVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKL 221 (550)
Q Consensus 165 g~~~l~~~~~~~~~~~~lT~~--------~------~-~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~~v~~ 221 (550)
+...|++++..++..+.+... . . ...++ .++++|+.||++...+ ..|.++++
T Consensus 703 ~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GI-avspdG~~LYVADs~n----~~Irv~D~ 769 (1057)
T PLN02919 703 GQHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGI-SLSPDLKELYIADSES----SSIRALDL 769 (1057)
T ss_pred CCCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEE-EEeCCCCEEEEEECCC----CeEEEEEC
Confidence 456788888766544332210 0 0 01123 4889999999876544 35666676
No 303
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=95.77 E-value=2.2 Score=41.80 Aligned_cols=181 Identities=12% Similarity=0.075 Sum_probs=99.7
Q ss_pred CCCeEEEEEEECCCCceEEEEcccCCCCCCCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCC------ceEEE
Q 008873 55 SNVKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTG------QRKVI 128 (550)
Q Consensus 55 ~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g------~~~~l 128 (550)
..+...|+|+-+....+.. ++ ..-...+..+.|.|-|++|+..++.. ...||.+...+- ..+.|
T Consensus 335 s~td~~i~V~kv~~~~P~~-t~-------~GH~g~V~alk~n~tg~LLaS~SdD~--TlkiWs~~~~~~~~~l~~Hskei 404 (524)
T KOG0273|consen 335 SSTDGCIHVCKVGEDRPVK-TF-------IGHHGEVNALKWNPTGSLLASCSDDG--TLKIWSMGQSNSVHDLQAHSKEI 404 (524)
T ss_pred cCCCceEEEEEecCCCcce-ee-------ecccCceEEEEECCCCceEEEecCCC--eeEeeecCCCcchhhhhhhccce
Confidence 3344456666665443322 11 23345688899999999998887654 345777543321 11222
Q ss_pred EEeecCceeeccCccccCCCCCccCCCcEEEEEccCCccEEEEEeCCCc-eeecccccCeEEEEEEeEeecCCEEEEEEc
Q 008873 129 LVEELDSWVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGT-CLGPITEGDWMVEQIVGVNEASGQVYFTGT 207 (550)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~~~-~~~~lT~~~~~~~~~~~~s~dg~~l~f~~~ 207 (550)
.+ -.|++.++.-.. .+.+..++..+ .++ -+-++|...+ ..-.++.+.-.|.... +||+|++++.- +
T Consensus 405 ~t---~~wsp~g~v~~n-----~~~~~~l~sas-~ds--tV~lwdv~~gv~i~~f~kH~~pVysva-fS~~g~ylAsG-s 471 (524)
T KOG0273|consen 405 YT---IKWSPTGPVTSN-----PNMNLMLASAS-FDS--TVKLWDVESGVPIHTLMKHQEPVYSVA-FSPNGRYLASG-S 471 (524)
T ss_pred ee---EeecCCCCccCC-----CcCCceEEEee-cCC--eEEEEEccCCceeEeeccCCCceEEEE-ecCCCcEEEec-C
Confidence 22 146554432111 11222133332 223 3444554443 4556777776777665 99999877643 4
Q ss_pred CCCCceeEEEEEEeCCCCCCCCCCCeeeCCCCceEEEEECCCCCEEEEeecCCCCCCEEEEEEc
Q 008873 208 LDGPLESHLYCAKLYPDWNHTLEAPVKLTNGKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSL 271 (550)
Q Consensus 208 ~~~~~~~~l~~v~~~~~g~~~~~~~~~lt~~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~ 271 (550)
.++ ..+++.... +. -.+.....+++..+.|+.+|.++...++.. .+.++|+
T Consensus 472 ~dg--~V~iws~~~---~~----l~~s~~~~~~Ifel~Wn~~G~kl~~~~sd~----~vcvldl 522 (524)
T KOG0273|consen 472 LDG--CVHIWSTKT---GK----LVKSYQGTGGIFELCWNAAGDKLGACASDG----SVCVLDL 522 (524)
T ss_pred CCC--eeEeccccc---hh----eeEeecCCCeEEEEEEcCCCCEEEEEecCC----CceEEEe
Confidence 433 267775543 21 344455555678889999999887776652 4455554
No 304
>PRK10252 entF enterobactin synthase subunit F; Provisional
Probab=95.66 E-value=0.029 Score=65.82 Aligned_cols=98 Identities=13% Similarity=0.077 Sum_probs=59.9
Q ss_pred eEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCchhhHHHHhhccCCCchHHHHHHHHHHHHcCC
Q 008873 329 KTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGL 408 (550)
Q Consensus 329 P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~ 408 (550)
|.++++||.++... .|..+.+.| ..++.|+.++.+|.+.... ....++++.+.+......-.
T Consensus 1069 ~~l~~lh~~~g~~~-------~~~~l~~~l-~~~~~v~~~~~~g~~~~~~----------~~~~l~~la~~~~~~i~~~~ 1130 (1296)
T PRK10252 1069 PTLFCFHPASGFAW-------QFSVLSRYL-DPQWSIYGIQSPRPDGPMQ----------TATSLDEVCEAHLATLLEQQ 1130 (1296)
T ss_pred CCeEEecCCCCchH-------HHHHHHHhc-CCCCcEEEEECCCCCCCCC----------CCCCHHHHHHHHHHHHHhhC
Confidence 56788999766532 233344444 4579999999998864311 01123333333222222111
Q ss_pred CCCCceEEEEechhHHHHHHHHhh---CCCeeEEEEEcCC
Q 008873 409 AKVGHIGLYGWSYGGYLSAITLAR---FPDVFQCAVSGAP 445 (550)
Q Consensus 409 ~d~~~i~i~G~S~GG~~a~~~~~~---~~~~~~~~v~~~~ 445 (550)
...++.++|||+||.++..++.+ .++.+..++...+
T Consensus 1131 -~~~p~~l~G~S~Gg~vA~e~A~~l~~~~~~v~~l~l~~~ 1169 (1296)
T PRK10252 1131 -PHGPYHLLGYSLGGTLAQGIAARLRARGEEVAFLGLLDT 1169 (1296)
T ss_pred -CCCCEEEEEechhhHHHHHHHHHHHHcCCceeEEEEecC
Confidence 12479999999999999998875 4677777776654
No 305
>KOG1551 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.63 E-value=0.03 Score=50.10 Aligned_cols=129 Identities=17% Similarity=0.172 Sum_probs=69.8
Q ss_pred CCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCcccccchhhhhcc-----------CCC------CCCc-cccc
Q 008873 411 VGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTFYTEKYM-----------GLP------SEDP-VGYE 472 (550)
Q Consensus 411 ~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~-----------g~~------~~~~-~~~~ 472 (550)
-.+.+|.|-||||.++..+...++..+ +.+|+..+......+.+..+ ..+ ..++ +.|.
T Consensus 194 ~g~~~~~g~Smgg~~a~~vgS~~q~Pv----a~~p~l~~~~asvs~teg~l~~~~s~~~~~~~~t~~~~~~~r~p~Q~~~ 269 (371)
T KOG1551|consen 194 LGNLNLVGRSMGGDIANQVGSLHQKPV----ATAPCLNSSKASVSATEGLLLQDTSKMKRFNQTTNKSGYTSRNPAQSYH 269 (371)
T ss_pred cccceeeeeecccHHHHhhcccCCCCc----cccccccccccchhhhhhhhhhhhHHHHhhccCcchhhhhhhCchhhHH
Confidence 468999999999999999998766543 33343333222111111110 000 0000 0010
Q ss_pred -------c-------------CChhhhhhcCCCc-----EEEEecCCCCCCChHHHHHHHHHHHHcCCCeEEEEcCCCCC
Q 008873 473 -------Y-------------SSVMHHVHKMKGK-----LLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERH 527 (550)
Q Consensus 473 -------~-------------~~~~~~~~~i~~P-----~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p~~~H 527 (550)
. .+-..++.++.+| +.++.+.+|.-+|-.....+.+.. -|..++++. .||
T Consensus 270 ~~~~~~srn~~~E~~~~Mr~vmd~~T~v~~fp~Pvdpsl~ivv~A~~D~Yipr~gv~~lQ~~W--Pg~eVr~~e---gGH 344 (371)
T KOG1551|consen 270 LLSKEQSRNSRKESLIFMRGVMDECTHVANFPVPVDPSLIIVVQAKEDAYIPRTGVRSLQEIW--PGCEVRYLE---GGH 344 (371)
T ss_pred HHHHHhhhcchHHHHHHHHHHHHhhchhhcCCCCCCCCeEEEEEecCCccccccCcHHHHHhC--CCCEEEEee---cCc
Confidence 0 1112344555444 356678999999876555554443 244445444 589
Q ss_pred cCCCCCcHHHHHHHHHHHHHH
Q 008873 528 MPRRHRDRIYMEERIWEFIER 548 (550)
Q Consensus 528 ~~~~~~~~~~~~~~~~~fl~~ 548 (550)
.-..-.+...+.++|.+-|++
T Consensus 345 Vsayl~k~dlfRR~I~d~L~R 365 (371)
T KOG1551|consen 345 VSAYLFKQDLFRRAIVDGLDR 365 (371)
T ss_pred eeeeehhchHHHHHHHHHHHh
Confidence 765555556677777776654
No 306
>KOG4388 consensus Hormone-sensitive lipase HSL [Lipid transport and metabolism]
Probab=95.51 E-value=0.033 Score=55.53 Aligned_cols=89 Identities=19% Similarity=0.182 Sum_probs=61.0
Q ss_pred ceEEEEEcCCCCceeecccccccchhH-hHHHHhCCcEEEEECCCCCCCCchhhHHHHhhccCCCchHHHHHHHHHHHHc
Q 008873 328 YKTLISVYGGPCVQLVCDSWINTVDMR-AQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQ 406 (550)
Q Consensus 328 ~P~vv~~hGg~~~~~~~~~~~~~~~~~-~~~l~~~G~~vv~~d~rG~g~~~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~ 406 (550)
.-+|+.+|||+......+. -..+ .++..+.|..|+.+||.-..... | ...++++..|.-|+++.
T Consensus 396 ~sli~HcHGGGfVAqsSkS----HE~YLr~Wa~aL~cPiiSVdYSLAPEaP--F---------PRaleEv~fAYcW~inn 460 (880)
T KOG4388|consen 396 RSLIVHCHGGGFVAQSSKS----HEPYLRSWAQALGCPIISVDYSLAPEAP--F---------PRALEEVFFAYCWAINN 460 (880)
T ss_pred ceEEEEecCCceeeecccc----ccHHHHHHHHHhCCCeEEeeeccCCCCC--C---------CcHHHHHHHHHHHHhcC
Confidence 3589999999776543222 1222 34455789999999997654221 1 12378888999999876
Q ss_pred CC---CCCCceEEEEechhHHHHHHHHh
Q 008873 407 GL---AKVGHIGLYGWSYGGYLSAITLA 431 (550)
Q Consensus 407 ~~---~d~~~i~i~G~S~GG~~a~~~~~ 431 (550)
.. -..+||++.|-|.||.+..-++.
T Consensus 461 ~allG~TgEriv~aGDSAGgNL~~~VaL 488 (880)
T KOG4388|consen 461 CALLGSTGERIVLAGDSAGGNLCFTVAL 488 (880)
T ss_pred HHHhCcccceEEEeccCCCcceeehhHH
Confidence 21 35689999999999997665543
No 307
>COG1075 LipA Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold [General function prediction only]
Probab=95.42 E-value=0.049 Score=52.92 Aligned_cols=100 Identities=16% Similarity=0.090 Sum_probs=59.9
Q ss_pred CceEEEEEcCCCCceeecccccccchhHhHHHHhCCcE---EEEECCCCCCCCchhhHHHHhhccCCCchHHHHHHHHHH
Q 008873 327 PYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGIL---VWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWL 403 (550)
Q Consensus 327 ~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~---vv~~d~rG~g~~~~~~~~~~~~~~~~~~~~D~~~~~~~l 403 (550)
+.|+ +++||..... .. +..+...+...|+. +..+++.+...... .. ...+-+.+-++.+
T Consensus 59 ~~pi-vlVhG~~~~~---~~----~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~---~~-------~~~~ql~~~V~~~ 120 (336)
T COG1075 59 KEPI-VLVHGLGGGY---GN----FLPLDYRLAILGWLTNGVYAFELSGGDGTYS---LA-------VRGEQLFAYVDEV 120 (336)
T ss_pred CceE-EEEccCcCCc---ch----hhhhhhhhcchHHHhcccccccccccCCCcc---cc-------ccHHHHHHHHHHH
Confidence 4454 5689963221 12 22234456777777 77887775411110 00 0122233334444
Q ss_pred HHcCCCCCCceEEEEechhHHHHHHHHhhCC--CeeEEEEEcCCc
Q 008873 404 IKQGLAKVGHIGLYGWSYGGYLSAITLARFP--DVFQCAVSGAPV 446 (550)
Q Consensus 404 ~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~--~~~~~~v~~~~~ 446 (550)
.... ...+|.++||||||..+.+++...+ .+++..+..++.
T Consensus 121 l~~~--ga~~v~LigHS~GG~~~ry~~~~~~~~~~V~~~~tl~tp 163 (336)
T COG1075 121 LAKT--GAKKVNLIGHSMGGLDSRYYLGVLGGANRVASVVTLGTP 163 (336)
T ss_pred Hhhc--CCCceEEEeecccchhhHHHHhhcCccceEEEEEEeccC
Confidence 3332 2378999999999999999998877 788888887664
No 308
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=95.39 E-value=1.2 Score=46.31 Aligned_cols=172 Identities=11% Similarity=0.042 Sum_probs=83.4
Q ss_pred EEEEECCCCceEEEEcccCCCCCCCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEe-ecCceeec
Q 008873 61 LGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVE-ELDSWVNL 139 (550)
Q Consensus 61 l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~-~~~~~~~~ 139 (550)
+.+|.+++.....+-- .....+..++++|-|=+.+..+.. ...+||.+|- -.+-+|... -++ .
T Consensus 475 vRLWsl~t~s~~V~y~--------GH~~PVwdV~F~P~GyYFatas~D--~tArLWs~d~--~~PlRifaghlsD----V 538 (707)
T KOG0263|consen 475 VRLWSLDTWSCLVIYK--------GHLAPVWDVQFAPRGYYFATASHD--QTARLWSTDH--NKPLRIFAGHLSD----V 538 (707)
T ss_pred eeeeecccceeEEEec--------CCCcceeeEEecCCceEEEecCCC--ceeeeeeccc--CCchhhhcccccc----c
Confidence 3445666654443321 223346678899998766555322 2347888765 233333221 111 0
Q ss_pred cCccccCCCCCccCCCc-EEEEEccCCccEEEEEeCCCceeecccccCeEEEEEEeEeecCCEEEEEEcCCCCceeEEEE
Q 008873 140 HDCFTPLDKGVTKYSGG-FIWASEKTGFRHLYLHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYC 218 (550)
Q Consensus 140 ~~~~~~~~~~~~~~~~~-~~~~s~~~g~~~l~~~~~~~~~~~~lT~~~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~~ 218 (550)
....+ .|+. +++.-..+-.-++|-+- .|...|..|.+.-.+.... +||+|++|+-.+ .++ ...||
T Consensus 539 -~cv~F-------HPNs~Y~aTGSsD~tVRlWDv~-~G~~VRiF~GH~~~V~al~-~Sp~Gr~LaSg~-ed~--~I~iW- 604 (707)
T KOG0263|consen 539 -DCVSF-------HPNSNYVATGSSDRTVRLWDVS-TGNSVRIFTGHKGPVTALA-FSPCGRYLASGD-EDG--LIKIW- 604 (707)
T ss_pred -ceEEE-------CCcccccccCCCCceEEEEEcC-CCcEEEEecCCCCceEEEE-EcCCCceEeecc-cCC--cEEEE-
Confidence 11111 2222 33221111123344332 3444566665555566554 999998776333 332 25566
Q ss_pred EEeCCCCCCCCCCCeeeCC-CCceEEEEECCCCCEEEEeecCCCCCCEEEEEEcC
Q 008873 219 AKLYPDWNHTLEAPVKLTN-GKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQ 272 (550)
Q Consensus 219 v~~~~~g~~~~~~~~~lt~-~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~ 272 (550)
|+. .|+ ...++-. .+-..+.+||.||..|+.- +.+. .+.+.|+.
T Consensus 605 -Dl~-~~~----~v~~l~~Ht~ti~SlsFS~dg~vLasg--g~Dn--sV~lWD~~ 649 (707)
T KOG0263|consen 605 -DLA-NGS----LVKQLKGHTGTIYSLSFSRDGNVLASG--GADN--SVRLWDLT 649 (707)
T ss_pred -EcC-CCc----chhhhhcccCceeEEEEecCCCEEEec--CCCC--eEEEEEch
Confidence 652 233 2233322 2237788999999866533 2222 44454653
No 309
>KOG3724 consensus Negative regulator of COPII vesicle formation [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.38 E-value=0.015 Score=59.99 Aligned_cols=47 Identities=21% Similarity=0.270 Sum_probs=31.7
Q ss_pred hHHHHHHHHHHHHc--C--CCC---CCceEEEEechhHHHHHHHHhhCCCeeEEE
Q 008873 393 AEDQLTGAEWLIKQ--G--LAK---VGHIGLYGWSYGGYLSAITLARFPDVFQCA 440 (550)
Q Consensus 393 ~~D~~~~~~~l~~~--~--~~d---~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~ 440 (550)
.+-+.+|++++.+. + .-+ |..|+|+||||||.+|..+++ +|+..++.
T Consensus 156 tEYV~dAIk~ILslYr~~~e~~~p~P~sVILVGHSMGGiVAra~~t-lkn~~~~s 209 (973)
T KOG3724|consen 156 TEYVNDAIKYILSLYRGEREYASPLPHSVILVGHSMGGIVARATLT-LKNEVQGS 209 (973)
T ss_pred HHHHHHHHHHHHHHhhcccccCCCCCceEEEEeccchhHHHHHHHh-hhhhccch
Confidence 34455667776653 1 223 667999999999999988777 45544443
No 310
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=95.36 E-value=0.31 Score=46.71 Aligned_cols=116 Identities=9% Similarity=0.069 Sum_probs=60.3
Q ss_pred EEEECCCCceEEEEcccCCCCCCCCCceeEEEEECCCCeEEEEEEecCC-------CceEEEEEECCCCceEEEEEeecC
Q 008873 62 GVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQ-------TKLKVLKFDIKTGQRKVILVEELD 134 (550)
Q Consensus 62 ~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~wspDg~~i~~~~~r~~-------~~~~l~~~~~~~g~~~~l~~~~~~ 134 (550)
.|||+.+|+-..+ + ..--..+..+.|||+|-.|+..+.... .+..+|.|++.+..+.++.
T Consensus 328 RvWDlRtgr~im~-L-------~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk----- 394 (459)
T KOG0272|consen 328 RVWDLRTGRCIMF-L-------AGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVK----- 394 (459)
T ss_pred heeecccCcEEEE-e-------cccccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccchhhheE-----
Confidence 4789999976544 2 222346788999999999887654432 1122344443333222221
Q ss_pred ceeeccCccccCCCCCccCCCcEEEEEccCCccEEEEEeCCCceeecccccCeEEEEEEeEeecCCEEEEEEc
Q 008873 135 SWVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGT 207 (550)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~~~~~~~lT~~~~~~~~~~~~s~dg~~l~f~~~ 207 (550)
|.| ..+.|+..+.-+..-.||.-. +....+.|..++-.|-... .++|+..|.-.+-
T Consensus 395 --------~~p-------~~g~fL~TasyD~t~kiWs~~-~~~~~ksLaGHe~kV~s~D-is~d~~~i~t~s~ 450 (459)
T KOG0272|consen 395 --------YSP-------QEGYFLVTASYDNTVKIWSTR-TWSPLKSLAGHEGKVISLD-ISPDSQAIATSSF 450 (459)
T ss_pred --------ecc-------cCCeEEEEcccCcceeeecCC-CcccchhhcCCccceEEEE-eccCCceEEEecc
Confidence 111 122355544334444555432 2334455655544444433 6788876654433
No 311
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=95.34 E-value=0.22 Score=47.45 Aligned_cols=99 Identities=10% Similarity=0.059 Sum_probs=58.4
Q ss_pred EEEEEccCCccEEEEEeCCCceeecccccCeEEEEEEeEeecCCEEEEEEcCCCCceeEEEEEEeCCCCCCCCCCCeeeC
Q 008873 157 FIWASEKTGFRHLYLHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLT 236 (550)
Q Consensus 157 ~~~~s~~~g~~~l~~~~~~~~~~~~lT~~~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~~v~~~~~g~~~~~~~~~lt 236 (550)
|+-.||. |.-.||-. ....+.++|+...|+|.... |.|. +.|++++.++.. ..++ |.. .|+ +|.
T Consensus 195 F~t~SdD-g~ikiWdf-~~~kee~vL~GHgwdVksvd-WHP~-kgLiasgskDnl--VKlW--Dpr-Sg~-------cl~ 258 (464)
T KOG0284|consen 195 FLTCSDD-GTIKIWDF-RMPKEERVLRGHGWDVKSVD-WHPT-KGLIASGSKDNL--VKLW--DPR-SGS-------CLA 258 (464)
T ss_pred eEEecCC-CeEEEEec-cCCchhheeccCCCCcceec-cCCc-cceeEEccCCce--eEee--cCC-Ccc-------hhh
Confidence 6655654 43334433 23556788888899998765 9887 467778777652 4444 542 222 222
Q ss_pred CC----CceEEEEECCCCCEEEEeecCCCCCCEEEEEEcCCCc
Q 008873 237 NG----KGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGS 275 (550)
Q Consensus 237 ~~----~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~ 275 (550)
.. ..+..+.|++++.+|+-. |. ...+.++|+.+-+
T Consensus 259 tlh~HKntVl~~~f~~n~N~Llt~-sk---D~~~kv~DiR~mk 297 (464)
T KOG0284|consen 259 TLHGHKNTVLAVKFNPNGNWLLTG-SK---DQSCKVFDIRTMK 297 (464)
T ss_pred hhhhccceEEEEEEcCCCCeeEEc-cC---CceEEEEehhHhH
Confidence 11 224556899999766433 32 2477888876333
No 312
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=95.27 E-value=0.52 Score=49.77 Aligned_cols=63 Identities=11% Similarity=0.015 Sum_probs=37.3
Q ss_pred EEEEEECCCCceEEEEcccCCCCCCCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceE
Q 008873 60 RLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRK 126 (550)
Q Consensus 60 ~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~ 126 (550)
.|.+||++++.....-.+..++.-.........++|+|||..+++..-+. .|-+++.++.+..
T Consensus 161 ~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~----~Vkvy~r~~we~~ 223 (933)
T KOG1274|consen 161 KVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDN----TVKVYSRKGWELQ 223 (933)
T ss_pred eEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCC----eEEEEccCCceeh
Confidence 46788999876542211111111122245678899999977555543332 3778888888764
No 313
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=95.14 E-value=0.12 Score=51.98 Aligned_cols=17 Identities=41% Similarity=0.507 Sum_probs=15.3
Q ss_pred eEEEcCCCCeEEEEEEe
Q 008873 6 GYWWSLDSKFIAFTQVD 22 (550)
Q Consensus 6 ~~~wSPdg~~lay~~~~ 22 (550)
+++|||||+++|-+..|
T Consensus 725 ~~AWSpdGr~~AtVcKD 741 (1012)
T KOG1445|consen 725 GIAWSPDGRRIATVCKD 741 (1012)
T ss_pred EEEECCCCcceeeeecC
Confidence 68899999999998776
No 314
>PLN00181 protein SPA1-RELATED; Provisional
Probab=95.14 E-value=5.3 Score=44.31 Aligned_cols=52 Identities=13% Similarity=0.110 Sum_probs=31.6
Q ss_pred EEEEEECCCCceEEEEcccCCCCCCCCCceeEEEEEC-CCCeEEEEEEecCCCceEEEEEECCCCc
Q 008873 60 RLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWM-HGNILTAQVLNRSQTKLKVLKFDIKTGQ 124 (550)
Q Consensus 60 ~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ws-pDg~~i~~~~~r~~~~~~l~~~~~~~g~ 124 (550)
.+.+||+.++..... +. ....+..+.|+ ++|..++...... .|++.|+.+++
T Consensus 599 ~v~iWd~~~~~~~~~-~~--------~~~~v~~v~~~~~~g~~latgs~dg----~I~iwD~~~~~ 651 (793)
T PLN00181 599 SVKLWSINQGVSIGT-IK--------TKANICCVQFPSESGRSLAFGSADH----KVYYYDLRNPK 651 (793)
T ss_pred EEEEEECCCCcEEEE-Ee--------cCCCeEEEEEeCCCCCEEEEEeCCC----eEEEEECCCCC
Confidence 577889987754321 11 12245667884 5788877765332 47777877654
No 315
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.98 E-value=1.2 Score=42.81 Aligned_cols=148 Identities=11% Similarity=0.007 Sum_probs=68.1
Q ss_pred ceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCce-EEEEEeecCceeeccCccccCCCCCccCCCc-EEEEEcc-C
Q 008873 88 EYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQR-KVILVEELDSWVNLHDCFTPLDKGVTKYSGG-FIWASEK-T 164 (550)
Q Consensus 88 ~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~-~ 164 (550)
..+....+|||||.|+.+... ...||. +++|.+ ..++....+ | .|..+........+. +++.+-. .
T Consensus 187 ~eV~DL~FS~dgk~lasig~d---~~~VW~--~~~g~~~a~~t~~~k~-~-----~~~~cRF~~d~~~~~l~laa~~~~~ 255 (398)
T KOG0771|consen 187 AEVKDLDFSPDGKFLASIGAD---SARVWS--VNTGAALARKTPFSKD-E-----MFSSCRFSVDNAQETLRLAASQFPG 255 (398)
T ss_pred CccccceeCCCCcEEEEecCC---ceEEEE--eccCchhhhcCCcccc-h-----hhhhceecccCCCceEEEEEecCCC
Confidence 345667899999999887533 234554 455532 333321111 1 111111110001112 2333222 2
Q ss_pred CccEEEEEeCCCc----eeecccccCeEEEEEEeEeecCCEEEEEEcCCCCceeEEEEEEeCCCCCCCCCCCeeeCCCC-
Q 008873 165 GFRHLYLHDINGT----CLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTNGK- 239 (550)
Q Consensus 165 g~~~l~~~~~~~~----~~~~lT~~~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~~v~~~~~g~~~~~~~~~lt~~~- 239 (550)
+.-.++...+-.+ +.++.+...-.++... +|+||+.+++-++..+ .-||.+.- - +..++....
T Consensus 256 ~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~-VS~dGkf~AlGT~dGs---Vai~~~~~--l------q~~~~vk~aH 323 (398)
T KOG0771|consen 256 GGVRLCDISLWSGSNFLRLRKKIKRFKSISSLA-VSDDGKFLALGTMDGS---VAIYDAKS--L------QRLQYVKEAH 323 (398)
T ss_pred CceeEEEeeeeccccccchhhhhhccCcceeEE-EcCCCcEEEEeccCCc---EEEEEece--e------eeeEeehhhh
Confidence 2222222221111 3344444333455544 8999998887777443 44553321 0 111222221
Q ss_pred --ceEEEEECCCCCEEEEeec
Q 008873 240 --GKHVAVLDHNMRNFVDFHD 258 (550)
Q Consensus 240 --~~~~~~~s~dg~~l~~~~s 258 (550)
-...+.|+||.++++=+.+
T Consensus 324 ~~~VT~ltF~Pdsr~~~svSs 344 (398)
T KOG0771|consen 324 LGFVTGLTFSPDSRYLASVSS 344 (398)
T ss_pred eeeeeeEEEcCCcCccccccc
Confidence 2455689999888765433
No 316
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=94.95 E-value=3.1 Score=38.60 Aligned_cols=218 Identities=10% Similarity=0.071 Sum_probs=103.4
Q ss_pred EEEEEECCCCceEEEEcccCCCCCCCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCceeec
Q 008873 60 RLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNL 139 (550)
Q Consensus 60 ~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~ 139 (550)
.|.+||..+++.... + ....+.+.-+.+......++..++.. ...|-.+++.+.+..+-+..-...-...
T Consensus 37 sl~LYd~~~g~~~~t-i-------~skkyG~~~~~Fth~~~~~i~sStk~--d~tIryLsl~dNkylRYF~GH~~~V~sL 106 (311)
T KOG1446|consen 37 SLRLYDSLSGKQVKT-I-------NSKKYGVDLACFTHHSNTVIHSSTKE--DDTIRYLSLHDNKYLRYFPGHKKRVNSL 106 (311)
T ss_pred eEEEEEcCCCceeeE-e-------ecccccccEEEEecCCceEEEccCCC--CCceEEEEeecCceEEEcCCCCceEEEE
Confidence 367889998865432 2 12233455567766666555544422 1346666666655443332111100000
Q ss_pred cCccccCCCCCccCCCcEEEEEccCCccEEEEEeCCCcee---ecccccCeEEEEEEeEeecCCEEEEEEcCCCCceeEE
Q 008873 140 HDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTCL---GPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHL 216 (550)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~~~~~---~~lT~~~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l 216 (550)
..+| -.|.|+-.|. + ..|.+.|+...+- ..++. . .+..++|.| |+|....+.- ...|
T Consensus 107 --~~sP-------~~d~FlS~S~-D--~tvrLWDlR~~~cqg~l~~~~-~----pi~AfDp~G--LifA~~~~~~-~IkL 166 (311)
T KOG1446|consen 107 --SVSP-------KDDTFLSSSL-D--KTVRLWDLRVKKCQGLLNLSG-R----PIAAFDPEG--LIFALANGSE-LIKL 166 (311)
T ss_pred --EecC-------CCCeEEeccc-C--CeEEeeEecCCCCceEEecCC-C----cceeECCCC--cEEEEecCCC-eEEE
Confidence 0001 1222332221 1 2456666543221 12221 1 234588887 5555543332 4677
Q ss_pred EEEEeCCCCCCCCCCCeeeCC--CCceEEEEECCCCCEEEEeecCCCCCCEEEEEEcCCCceeEeccC--CCCChhhhhc
Q 008873 217 YCAKLYPDWNHTLEAPVKLTN--GKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLYE--QPLTVPRIKR 292 (550)
Q Consensus 217 ~~v~~~~~g~~~~~~~~~lt~--~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~~~~~l~~--~~~~~~~~~~ 292 (550)
|-+.- -++++- ..-.++. ...+....||||||+++++-.. ..++++|.=+|......+. +..+.+ + +
T Consensus 167 yD~Rs--~dkgPF-~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~----s~~~~lDAf~G~~~~tfs~~~~~~~~~-~-~ 237 (311)
T KOG1446|consen 167 YDLRS--FDKGPF-TTFSITDNDEAEWTDLEFSPDGKSILLSTNA----SFIYLLDAFDGTVKSTFSGYPNAGNLP-L-S 237 (311)
T ss_pred EEecc--cCCCCc-eeEccCCCCccceeeeEEcCCCCEEEEEeCC----CcEEEEEccCCcEeeeEeeccCCCCcc-e-e
Confidence 75443 222110 1112221 2246778999999998777433 5789999888875443322 221111 1 2
Q ss_pred CCCCCCeEEEEEcCCCcEEEEEEE
Q 008873 293 LQLEPPDIVQIQANDGTVLYGALY 316 (550)
Q Consensus 293 ~~~~~~~~~~~~~~~g~~l~~~~~ 316 (550)
..+.+-..+.+...++..|+.|-.
T Consensus 238 a~ftPds~Fvl~gs~dg~i~vw~~ 261 (311)
T KOG1446|consen 238 ATFTPDSKFVLSGSDDGTIHVWNL 261 (311)
T ss_pred EEECCCCcEEEEecCCCcEEEEEc
Confidence 223222334444444445777755
No 317
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=94.94 E-value=1.6 Score=43.12 Aligned_cols=181 Identities=10% Similarity=-0.029 Sum_probs=87.8
Q ss_pred EEEEEEECCCCceEEEEcccCCCCCCCCCceeEEEEECCCC--eEEEEEEecCC-C--ceEEEEEECCCCce-EEEEEee
Q 008873 59 VRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGN--ILTAQVLNRSQ-T--KLKVLKFDIKTGQR-KVILVEE 132 (550)
Q Consensus 59 ~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~wspDg--~~i~~~~~r~~-~--~~~l~~~~~~~g~~-~~l~~~~ 132 (550)
.+|+++++ |+...+.... .-....+..+.|||-| ..++++.-... . .-.|+.++..+-.. +.|....
T Consensus 152 ~sl~i~e~-t~n~~~~p~~------~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~ 224 (561)
T COG5354 152 SSLYIHEI-TDNIEEHPFK------NLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVS 224 (561)
T ss_pred CeEEEEec-CCccccCchh------hccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeec
Confidence 36788887 5544333221 1123467788999964 46666643322 2 23566766322111 2232222
Q ss_pred cC--ceeeccCccccCCCCCccCCCcEEEEE------ccCCc--cEEEEEeCCCceeecccccCeEEEEEEeEeecCCEE
Q 008873 133 LD--SWVNLHDCFTPLDKGVTKYSGGFIWAS------EKTGF--RHLYLHDINGTCLGPITEGDWMVEQIVGVNEASGQV 202 (550)
Q Consensus 133 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~s------~~~g~--~~l~~~~~~~~~~~~lT~~~~~~~~~~~~s~dg~~l 202 (550)
+- .|- ..++-+++.. +++-| .+||++.......+..-.-.-.|.++. |.|+++.+
T Consensus 225 ~~qLkW~--------------~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~~~~~~pVhdf~-W~p~S~~F 289 (561)
T COG5354 225 GVQLKWQ--------------VLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVEKDLKDPVHDFT-WEPLSSRF 289 (561)
T ss_pred ccEEEEe--------------cCCceEEEEEEEeeecccceeccceEEEEeecccccceeccccccceeee-ecccCCce
Confidence 11 221 1223233322 22224 799999876543332211122355664 99999998
Q ss_pred EEEEcCCCCceeEEEEEEeCCCCCCCCCCCeeeCCCCceEEEEECCCCCEEEEeecCCCCCCEEEEEEcC
Q 008873 203 YFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTNGKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQ 272 (550)
Q Consensus 203 ~f~~~~~~~~~~~l~~v~~~~~g~~~~~~~~~lt~~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~ 272 (550)
...+.... ..+-..++ .|+ ++-.-...--....|||.++++++..- .+....+-+.+..
T Consensus 290 ~vi~g~~p---a~~s~~~l--r~N-----l~~~~Pe~~rNT~~fsp~~r~il~agF-~nl~gni~i~~~~ 348 (561)
T COG5354 290 AVISGYMP---ASVSVFDL--RGN-----LRFYFPEQKRNTIFFSPHERYILFAGF-DNLQGNIEIFDPA 348 (561)
T ss_pred eEEecccc---cceeeccc--ccc-----eEEecCCcccccccccCcccEEEEecC-CccccceEEeccC
Confidence 88874321 22333344 332 111111112344578888887766432 2333455555653
No 318
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=94.74 E-value=0.16 Score=52.78 Aligned_cols=59 Identities=17% Similarity=0.147 Sum_probs=44.8
Q ss_pred CccceEEEcCCCCeEEEEEEeCCCCCeEEEeecCCCCCCCCCcccccCCCCCCCCCeEEEEEEECCCCceEEEEcccCCC
Q 008873 2 DRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQCGGT 81 (550)
Q Consensus 2 ~~~~~~~wSPdg~~lay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~ 81 (550)
+|-.++.+|||||+|+=+..|. .|.+||+-++...-.-.
T Consensus 577 nritd~~FS~DgrWlisasmD~------------------------------------tIr~wDlpt~~lID~~~----- 615 (910)
T KOG1539|consen 577 NRITDMTFSPDGRWLISASMDS------------------------------------TIRTWDLPTGTLIDGLL----- 615 (910)
T ss_pred cceeeeEeCCCCcEEEEeecCC------------------------------------cEEEEeccCcceeeeEe-----
Confidence 4668899999999999887763 36889999987653211
Q ss_pred CCCCCCceeEEEEECCCCeEEEEE
Q 008873 82 DQNYDEEYLARVNWMHGNILTAQV 105 (550)
Q Consensus 82 ~~~~~~~~~~~~~wspDg~~i~~~ 105 (550)
-+....++++||.|.+++.+
T Consensus 616 ----vd~~~~sls~SPngD~LAT~ 635 (910)
T KOG1539|consen 616 ----VDSPCTSLSFSPNGDFLATV 635 (910)
T ss_pred ----cCCcceeeEECCCCCEEEEE
Confidence 13345678999999999876
No 319
>PF02450 LCAT: Lecithin:cholesterol acyltransferase; InterPro: IPR003386 Lecithin:cholesterol acyltransferase (LACT), also known as phosphatidylcholine-sterol acyltransferase (2.3.1.43 from EC), is involved in extracellular metabolism of plasma lipoproteins, including cholesterol. It esterifies the free cholesterol transported in plasma lipoproteins, and is activated by apolipoprotein A-I. Defects in LACT cause Norum and Fish eye diseases. This family also includes phospholipid:diacylglycerol acyltransferase (PDAT)(2.3.1.158 from EC), which is involved in triacylglycerol formation by an acyl-CoA independent pathway. The enzyme specifically transfers acyl groups from the sn-2 position of a phospholipid to diacylglycerol, thus forming an sn-1-lysophospholipid [].; GO: 0008374 O-acyltransferase activity, 0006629 lipid metabolic process
Probab=94.73 E-value=0.1 Score=51.99 Aligned_cols=81 Identities=16% Similarity=0.047 Sum_probs=52.0
Q ss_pred chhHhHHHHhCCcEE-----EE-ECCCCCCCCchhhHHHHhhccCCCchHHHHHHHHHHHHcCCCCCCceEEEEechhHH
Q 008873 351 VDMRAQYLRSKGILV-----WK-LDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGY 424 (550)
Q Consensus 351 ~~~~~~~l~~~G~~v-----v~-~d~rG~g~~~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~ 424 (550)
|..+.+.|.+.||.. .+ +|.|-+.... ..+ ...+...|+.+.+.. ..+|.|+||||||.
T Consensus 67 ~~~li~~L~~~GY~~~~~l~~~pYDWR~~~~~~--------~~~----~~~lk~~ie~~~~~~---~~kv~li~HSmGgl 131 (389)
T PF02450_consen 67 FAKLIENLEKLGYDRGKDLFAAPYDWRLSPAER--------DEY----FTKLKQLIEEAYKKN---GKKVVLIAHSMGGL 131 (389)
T ss_pred HHHHHHHHHhcCcccCCEEEEEeechhhchhhH--------HHH----HHHHHHHHHHHHHhc---CCcEEEEEeCCCch
Confidence 344678888877753 33 6888543200 011 344455555554432 57999999999999
Q ss_pred HHHHHHhhCCC------eeEEEEEcCCc
Q 008873 425 LSAITLARFPD------VFQCAVSGAPV 446 (550)
Q Consensus 425 ~a~~~~~~~~~------~~~~~v~~~~~ 446 (550)
++...+...+. .++..|.+++.
T Consensus 132 ~~~~fl~~~~~~~W~~~~i~~~i~i~~p 159 (389)
T PF02450_consen 132 VARYFLQWMPQEEWKDKYIKRFISIGTP 159 (389)
T ss_pred HHHHHHHhccchhhHHhhhhEEEEeCCC
Confidence 99998876632 47788877764
No 320
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=94.72 E-value=3.2 Score=41.22 Aligned_cols=195 Identities=11% Similarity=0.025 Sum_probs=85.6
Q ss_pred EEEEEECCCCceEEEEcccCCCCCCCC-CceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCceee
Q 008873 60 RLGVVSAAGGPVSWMDLQCGGTDQNYD-EEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVN 138 (550)
Q Consensus 60 ~l~~~d~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~ 138 (550)
.+..||+.+=....-.+. .+.+. ...+.+.+||+.|..|+.++...+ .-++|.++-+...-. .++.++-
T Consensus 190 ~v~~wDf~gMdas~~~fr----~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aq----akl~DRdG~~~~e~~--KGDQYI~ 259 (641)
T KOG0772|consen 190 TVKFWDFQGMDASMRSFR----QLQPCETHQINSLQYSVTGDQILVVSGSAQ----AKLLDRDGFEIVEFS--KGDQYIR 259 (641)
T ss_pred eEEEEecccccccchhhh----ccCcccccccceeeecCCCCeEEEEecCcc----eeEEccCCceeeeee--ccchhhh
Confidence 467788886332210010 01122 346778899999997766654332 444555543322111 1111110
Q ss_pred c----cCccccCCCCCccCCCc---EEEEEccCCccEEEEEeCCCceeecc---c-ccCeEEEEEEeEeecCCEEEEEEc
Q 008873 139 L----HDCFTPLDKGVTKYSGG---FIWASEKTGFRHLYLHDINGTCLGPI---T-EGDWMVEQIVGVNEASGQVYFTGT 207 (550)
Q Consensus 139 ~----~~~~~~~~~~~~~~~~~---~~~~s~~~g~~~l~~~~~~~~~~~~l---T-~~~~~~~~~~~~s~dg~~l~f~~~ 207 (550)
+ .-+..-+..+ .|.|+. |+-.+ .+|--+||-++..-.+...+ + .|.........|++||+.|+-..
T Consensus 260 Dm~nTKGHia~lt~g-~whP~~k~~FlT~s-~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc- 336 (641)
T KOG0772|consen 260 DMYNTKGHIAELTCG-CWHPDNKEEFLTCS-YDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGC- 336 (641)
T ss_pred hhhccCCceeeeecc-ccccCcccceEEec-CCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcc-
Confidence 0 0000000000 233322 44444 34666677766433332222 1 12222122345999998855333
Q ss_pred CCCCceeEEEEEEeCCCCCCCCCCCeeeC-CCCceEEEEECCCCCEEEEeecCCCCCCEEEEEEcCCCc
Q 008873 208 LDGPLESHLYCAKLYPDWNHTLEAPVKLT-NGKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGS 275 (550)
Q Consensus 208 ~~~~~~~~l~~v~~~~~g~~~~~~~~~lt-~~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~ 275 (550)
.++. .++|...- -...+.-.++.-- .+.++.+++||.||++|+ +.+. + -.|-+.|+..-+
T Consensus 337 ~DGS--IQ~W~~~~--~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~Ll-SRg~-D--~tLKvWDLrq~k 397 (641)
T KOG0772|consen 337 LDGS--IQIWDKGS--RTVRPVMKVKDAHLPGQDITSISFSYDGNYLL-SRGF-D--DTLKVWDLRQFK 397 (641)
T ss_pred cCCc--eeeeecCC--cccccceEeeeccCCCCceeEEEeccccchhh-hccC-C--Cceeeeeccccc
Confidence 3332 56663211 1110000011111 122477789999999874 2221 2 256666665554
No 321
>PF11288 DUF3089: Protein of unknown function (DUF3089); InterPro: IPR021440 This family of proteins has no known function.
Probab=94.71 E-value=0.043 Score=48.36 Aligned_cols=85 Identities=15% Similarity=0.061 Sum_probs=52.4
Q ss_pred CcEEEEECCCCCCCCchh-hHHHHhhccCCCchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhC----C--
Q 008873 362 GILVWKLDNRGTARRGLK-FEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARF----P-- 434 (550)
Q Consensus 362 G~~vv~~d~rG~g~~~~~-~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~----~-- 434 (550)
-..|++|-||-..-.... -............+.|+.+|.++.+++.. +...++|.|||+|+.+...++-++ |
T Consensus 45 ~~~vfAP~YRQatl~~~~~~~~~~~~~a~~~ay~DV~~AF~~yL~~~n-~GRPfILaGHSQGs~~l~~LL~e~~~~~pl~ 123 (207)
T PF11288_consen 45 VCNVFAPRYRQATLYAFLDTDREDAEKAFDLAYSDVRAAFDYYLANYN-NGRPFILAGHSQGSMHLLRLLKEEIAGDPLR 123 (207)
T ss_pred CCccccChhhcchhhhhhccCcchhHHHHHhhHHHHHHHHHHHHHhcC-CCCCEEEEEeChHHHHHHHHHHHHhcCchHH
Confidence 357888888853211100 00000111123458999999998877642 346899999999999999998753 2
Q ss_pred -CeeEEEEEcCCcC
Q 008873 435 -DVFQCAVSGAPVT 447 (550)
Q Consensus 435 -~~~~~~v~~~~~~ 447 (550)
.++.|-+...+++
T Consensus 124 ~rLVAAYliG~~v~ 137 (207)
T PF11288_consen 124 KRLVAAYLIGYPVT 137 (207)
T ss_pred hhhheeeecCcccc
Confidence 2455555555553
No 322
>TIGR03712 acc_sec_asp2 accessory Sec system protein Asp2. This protein is designated Asp2 because, along with SecY2, SecA2, and other proteins it is part of the accessory secretory protein system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown.
Probab=94.69 E-value=2.8 Score=41.81 Aligned_cols=114 Identities=12% Similarity=0.082 Sum_probs=68.8
Q ss_pred CCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEE-EEECCCCCCCC---ch-hhH
Q 008873 307 DGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILV-WKLDNRGTARR---GL-KFE 381 (550)
Q Consensus 307 ~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~v-v~~d~rG~g~~---~~-~~~ 381 (550)
.+.++.++ +-|-+ -|-|+.|++-|.-... .| .. .-.+...|... +.-|.|--||. |. +++
T Consensus 274 ~reEi~yY-FnPGD-----~KPPL~VYFSGyR~aE----GF----Eg-y~MMk~Lg~PfLL~~DpRleGGaFYlGs~eyE 338 (511)
T TIGR03712 274 KRQEFIYY-FNPGD-----FKPPLNVYFSGYRPAE----GF----EG-YFMMKRLGAPFLLIGDPRLEGGAFYLGSDEYE 338 (511)
T ss_pred CCCeeEEe-cCCcC-----CCCCeEEeeccCcccC----cc----hh-HHHHHhcCCCeEEeeccccccceeeeCcHHHH
Confidence 45555444 34544 3559999998842221 11 10 22345667654 55588866653 21 122
Q ss_pred HHHhhccCCCchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCc
Q 008873 382 ASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSW 449 (550)
Q Consensus 382 ~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~ 449 (550)
+ -++..|+...+.=..+.+.+++.|.|||.+-|++.++.... .|+|..=|+++.
T Consensus 339 ~------------~I~~~I~~~L~~LgF~~~qLILSGlSMGTfgAlYYga~l~P--~AIiVgKPL~NL 392 (511)
T TIGR03712 339 Q------------GIINVIQEKLDYLGFDHDQLILSGLSMGTFGALYYGAKLSP--HAIIVGKPLVNL 392 (511)
T ss_pred H------------HHHHHHHHHHHHhCCCHHHeeeccccccchhhhhhcccCCC--ceEEEcCcccch
Confidence 2 23444444333323578899999999999999999987532 578888887764
No 323
>cd00741 Lipase Lipase. Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation", the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site.
Probab=94.49 E-value=0.091 Score=44.64 Aligned_cols=38 Identities=21% Similarity=0.086 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhCC
Q 008873 395 DQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFP 434 (550)
Q Consensus 395 D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~ 434 (550)
.+...++....+. ...+|.++|||+||.+|..++....
T Consensus 13 ~i~~~~~~~~~~~--p~~~i~v~GHSlGg~lA~l~a~~~~ 50 (153)
T cd00741 13 LVLPLLKSALAQY--PDYKIHVTGHSLGGALAGLAGLDLR 50 (153)
T ss_pred HHHHHHHHHHHHC--CCCeEEEEEcCHHHHHHHHHHHHHH
Confidence 3444444444331 3578999999999999998887653
No 324
>KOG2521 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.49 E-value=1 Score=43.40 Aligned_cols=66 Identities=12% Similarity=0.058 Sum_probs=57.8
Q ss_pred CCcEEEEecCCCCCCChHHHHHHHHHHHHcCCCeEEEEcCCCCCcCCCCCcHHHHHHHHHHHHHHh
Q 008873 484 KGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIERT 549 (550)
Q Consensus 484 ~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p~~~H~~~~~~~~~~~~~~~~~fl~~~ 549 (550)
..+.+.+.+..|.++|..+-+++.+..+..|..+.-+-+.++.|..........+.+...+|++..
T Consensus 225 ~~~~ly~~s~~d~v~~~~~ie~f~~~~~~~g~~v~s~~~~ds~H~~h~r~~p~~y~~~~~~Fl~~~ 290 (350)
T KOG2521|consen 225 PWNQLYLYSDNDDVLPADEIEKFIALRREKGVNVKSVKFKDSEHVAHFRSFPKTYLKKCSEFLRSV 290 (350)
T ss_pred cccceeecCCccccccHHHHHHHHHHHHhcCceEEEeeccCccceeeeccCcHHHHHHHHHHHHhc
Confidence 357788889999999999999999999999999999999999998766677888899999999864
No 325
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=94.43 E-value=5.7 Score=44.40 Aligned_cols=102 Identities=11% Similarity=0.017 Sum_probs=53.1
Q ss_pred ccCCCc-EEEEE-c--cCC-ccEEEEEeCCCceeecccccCeEEEEEEeEeecCCEEEEEEcCCCCceeEEEEEEeCCCC
Q 008873 151 TKYSGG-FIWAS-E--KTG-FRHLYLHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDW 225 (550)
Q Consensus 151 ~~~~~~-~~~~s-~--~~g-~~~l~~~~~~~~~~~~lT~~~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~~v~~~~~g 225 (550)
+|-+|| |+.+| - ..| .+.|-+++.+| +..-.++.--.......|.|.|+.|+-+....+. ..|-.+.- +|
T Consensus 216 SWRGDG~yFAVss~~~~~~~~R~iRVy~ReG-~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~--~~VvFfEr--NG 290 (928)
T PF04762_consen 216 SWRGDGEYFAVSSVEPETGSRRVIRVYSREG-ELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDR--HDVVFFER--NG 290 (928)
T ss_pred EECCCCcEEEEEEEEcCCCceeEEEEECCCc-eEEeccccCCCccCCccCCCCCCEEEEEEEcCCC--cEEEEEec--CC
Confidence 577777 33332 2 345 56777777764 3222222111112345699999988877653332 33333332 33
Q ss_pred CCCCCCCeeeCC---CCceEEEEECCCCCEEEEeecC
Q 008873 226 NHTLEAPVKLTN---GKGKHVAVLDHNMRNFVDFHDS 259 (550)
Q Consensus 226 ~~~~~~~~~lt~---~~~~~~~~~s~dg~~l~~~~s~ 259 (550)
- +.++ -.|.. ........|++|+..|++...+
T Consensus 291 L-rhge-F~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~ 325 (928)
T PF04762_consen 291 L-RHGE-FTLRFDPEEEKVIELAWNSDSEILAVWLED 325 (928)
T ss_pred c-Eeee-EecCCCCCCceeeEEEECCCCCEEEEEecC
Confidence 2 1111 12221 1235667899999998887644
No 326
>PF06850 PHB_depo_C: PHB de-polymerase C-terminus; InterPro: IPR009656 This entry represents the C terminus of bacterial poly(3-hydroxybutyrate) (PHB) de-polymerase. This degrades PHB granules to oligomers and monomers of 3-hydroxy-butyric acid.
Probab=94.37 E-value=0.067 Score=46.04 Aligned_cols=70 Identities=21% Similarity=0.133 Sum_probs=54.2
Q ss_pred hhcCC-CcEEEEecCCCCCCChHHHHHHHHHHHHcC-CCeEEEEcCCCCCc--CCCCCcHHHHHHHHHHHHHHh
Q 008873 480 VHKMK-GKLLLVHGMIDENVHFRHTARLINALVAAR-KPYEILIFPDERHM--PRRHRDRIYMEERIWEFIERT 549 (550)
Q Consensus 480 ~~~i~-~P~lii~G~~D~~v~~~~~~~~~~~l~~~~-~~~~~~~~p~~~H~--~~~~~~~~~~~~~~~~fl~~~ 549 (550)
.+.|+ +++|-|-|+.|+++.+.|+....+.+.... .....++.|++||. |.+...+.+++..+.+|+.++
T Consensus 129 p~aI~~taLlTVEGe~DDIsg~GQT~AA~~LC~glp~~~k~~~~~~g~GHYGlF~G~rwr~~I~P~i~~fi~~~ 202 (202)
T PF06850_consen 129 PAAIRRTALLTVEGERDDISGPGQTHAAHDLCTGLPADMKRHHLQPGVGHYGLFNGSRWREEIYPRIREFIRQH 202 (202)
T ss_pred hHHcccceeEEeecCcccCCcchHHHHHHHHhcCCCHHHhhhcccCCCCeeecccchhhhhhhhHHHHHHHHhC
Confidence 44454 688889999999999999988776654332 23456778999996 577778889999999999864
No 327
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=94.35 E-value=3.4 Score=42.41 Aligned_cols=114 Identities=9% Similarity=0.085 Sum_probs=60.5
Q ss_pred eEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCceeeccCccccCCCCCccCCCc-EEEEEccCCccE
Q 008873 90 LARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYSGG-FIWASEKTGFRH 168 (550)
Q Consensus 90 ~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~g~~~ 168 (550)
.+...++-|+..++.++ .+..+|..+++++...+.+....... .-+.+.-+ ..+++| ++.+.. +...
T Consensus 431 a~~i~ftid~~k~~~~s---~~~~~le~~el~~ps~kel~~~~~~~---~~~~I~~l----~~SsdG~yiaa~~--t~g~ 498 (691)
T KOG2048|consen 431 ASAISFTIDKNKLFLVS---KNIFSLEEFELETPSFKELKSIQSQA---KCPSISRL----VVSSDGNYIAAIS--TRGQ 498 (691)
T ss_pred ceeeEEEecCceEEEEe---cccceeEEEEecCcchhhhhcccccc---CCCcceeE----EEcCCCCEEEEEe--ccce
Confidence 45567888888776665 23345777777777655544322110 00111111 123333 554443 4568
Q ss_pred EEEEeCCCceeeccc-ccCeEEEEEEeEee-cCCEEEEEEcCCCCceeEEEEEEe
Q 008873 169 LYLHDINGTCLGPIT-EGDWMVEQIVGVNE-ASGQVYFTGTLDGPLESHLYCAKL 221 (550)
Q Consensus 169 l~~~~~~~~~~~~lT-~~~~~~~~~~~~s~-dg~~l~f~~~~~~~~~~~l~~v~~ 221 (550)
|+++++++.+-+.|- .-+..+... .++| +.+.|+..... .++|..++
T Consensus 499 I~v~nl~~~~~~~l~~rln~~vTa~-~~~~~~~~~lvvats~-----nQv~efdi 547 (691)
T KOG2048|consen 499 IFVYNLETLESHLLKVRLNIDVTAA-AFSPFVRNRLVVATSN-----NQVFEFDI 547 (691)
T ss_pred EEEEEcccceeecchhccCcceeee-eccccccCcEEEEecC-----CeEEEEec
Confidence 999999988766555 223344433 3553 34455554433 36666665
No 328
>PF04083 Abhydro_lipase: Partial alpha/beta-hydrolase lipase region; InterPro: IPR006693 The alpha/beta hydrolase fold is common to several hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is similar: an alpha/beta sheet, not barrel, of eight beta-sheets connected by alpha-helices []. This entry represents the N-terminal part of an alpha/beta hydrolase domain found in a number of lipases.; GO: 0006629 lipid metabolic process; PDB: 1K8Q_B 1HLG_B.
Probab=94.26 E-value=0.16 Score=35.22 Aligned_cols=44 Identities=16% Similarity=0.107 Sum_probs=25.9
Q ss_pred CCeEEEEEcCCCcEEEEEEEcCCC-CCCCCCCceEEEEEcCCCCc
Q 008873 297 PPDIVQIQANDGTVLYGALYKPDE-SRYGPPPYKTLISVYGGPCV 340 (550)
Q Consensus 297 ~~~~~~~~~~~g~~l~~~~~~P~~-~~~~~~~~P~vv~~hGg~~~ 340 (550)
+.|+..+++.||..|....+.+.. .....+++|+|++.||-..+
T Consensus 11 ~~E~h~V~T~DGYiL~l~RIp~~~~~~~~~~~k~pVll~HGL~~s 55 (63)
T PF04083_consen 11 PCEEHEVTTEDGYILTLHRIPPGKNSSNQNKKKPPVLLQHGLLQS 55 (63)
T ss_dssp --EEEEEE-TTSEEEEEEEE-SBTTCTTTTTT--EEEEE--TT--
T ss_pred CcEEEEEEeCCCcEEEEEEccCCCCCcccCCCCCcEEEECCcccC
Confidence 678999999999999888887765 22233577899999996444
No 329
>COG2939 Carboxypeptidase C (cathepsin A) [Amino acid transport and metabolism]
Probab=94.19 E-value=0.17 Score=50.23 Aligned_cols=115 Identities=14% Similarity=0.075 Sum_probs=59.9
Q ss_pred EEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccc------------cccchhHhHHHHhCCcEEEEEC-CCCCCCCc
Q 008873 311 LYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSW------------INTVDMRAQYLRSKGILVWKLD-NRGTARRG 377 (550)
Q Consensus 311 l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~------------~~~~~~~~~~l~~~G~~vv~~d-~rG~g~~~ 377 (550)
...|.+.++.. +.+.|+++++.|||++..+.-.+ ++........+.+ .-.+|.+| .-|.|.|-
T Consensus 87 ~ffy~fe~~nd---p~~rPvi~wlNGGPGcSS~~g~l~elGP~rI~~~~~P~~~~NP~SW~~-~adLvFiDqPvGTGfS~ 162 (498)
T COG2939 87 FFFYTFESPND---PANRPVIFWLNGGPGCSSVTGLLGELGPKRIQSGTSPSYPDNPGSWLD-FADLVFIDQPVGTGFSR 162 (498)
T ss_pred EEEEEecCCCC---CCCCceEEEecCCCChHhhhhhhhhcCCeeeeCCCCCCCCCCcccccc-CCceEEEecCcccCccc
Confidence 44455554332 25789999999999987654322 1111000111112 23578888 55666543
Q ss_pred hhhHHHHhhccCCCchHHHHHHHHHHHHc-CCC--CCCceEEEEechhHHHHHHHHh
Q 008873 378 LKFEASIKHNCGRIDAEDQLTGAEWLIKQ-GLA--KVGHIGLYGWSYGGYLSAITLA 431 (550)
Q Consensus 378 ~~~~~~~~~~~~~~~~~D~~~~~~~l~~~-~~~--d~~~i~i~G~S~GG~~a~~~~~ 431 (550)
. .......+. ...-+|+..+.+.+.+. +.. ...+..|+|.||||+-+..+|.
T Consensus 163 a-~~~e~~~d~-~~~~~D~~~~~~~f~~~fp~~~r~~~~~~L~GESYgg~yip~~A~ 217 (498)
T COG2939 163 A-LGDEKKKDF-EGAGKDVYSFLRLFFDKFPHYARLLSPKFLAGESYGGHYIPVFAH 217 (498)
T ss_pred c-cccccccch-hccchhHHHHHHHHHHHHHHHhhhcCceeEeeccccchhhHHHHH
Confidence 2 111111111 11235555555544332 111 2247899999999998776664
No 330
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=94.18 E-value=6.6 Score=39.73 Aligned_cols=152 Identities=14% Similarity=0.036 Sum_probs=76.8
Q ss_pred cCCCcEEEEEccCCc-cEEEEEeCCC-ceeecccccCeEEEEEEeEeecCCEEEEEEcCCCCceeEEEEEEeCCCCCCCC
Q 008873 152 KYSGGFIWASEKTGF-RHLYLHDING-TCLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTL 229 (550)
Q Consensus 152 ~~~~~~~~~s~~~g~-~~l~~~~~~~-~~~~~lT~~~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~~v~~~~~g~~~~ 229 (550)
|++|+-.+.| +|. ..+++.|... .....++...-.|.... |+|=-..|+.++..-. .+.|..-+.. .|.
T Consensus 309 ws~d~~~lAS--GgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~a-wcP~q~~lLAsGGGs~--D~~i~fwn~~-~g~--- 379 (484)
T KOG0305|consen 309 WSPDGNQLAS--GGNDNVVFIWDGLSPEPKFTFTEHTAAVKALA-WCPWQSGLLATGGGSA--DRCIKFWNTN-TGA--- 379 (484)
T ss_pred ECCCCCeecc--CCCccceEeccCCCccccEEEeccceeeeEee-eCCCccCceEEcCCCc--ccEEEEEEcC-CCc---
Confidence 4455533333 222 3456666533 23446666666666654 8887666776655332 2444444552 232
Q ss_pred CCCeeeCCCCceEEEEECCCCCEEEEeecCCCCCCEEEEEEcCCCceeEeccCCCCChhhhhcCCCCCCeEEEEEcCCCc
Q 008873 230 EAPVKLTNGKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLYEQPLTVPRIKRLQLEPPDIVQIQANDGT 309 (550)
Q Consensus 230 ~~~~~lt~~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 309 (550)
....+..+..+.+..||+..+.|+.++..+.. ++.+....+-+.+..+...+. . .-...+.+-....+......
T Consensus 380 -~i~~vdtgsQVcsL~Wsk~~kEi~sthG~s~n--~i~lw~~ps~~~~~~l~gH~~--R-Vl~la~SPdg~~i~t~a~DE 453 (484)
T KOG0305|consen 380 -RIDSVDTGSQVCSLIWSKKYKELLSTHGYSEN--QITLWKYPSMKLVAELLGHTS--R-VLYLALSPDGETIVTGAADE 453 (484)
T ss_pred -EecccccCCceeeEEEcCCCCEEEEecCCCCC--cEEEEeccccceeeeecCCcc--e-eEEEEECCCCCEEEEecccC
Confidence 23334444457778999999999888766554 444444333333344433221 1 11222323222333333334
Q ss_pred EEEEEEEcC
Q 008873 310 VLYGALYKP 318 (550)
Q Consensus 310 ~l~~~~~~P 318 (550)
+|..|-+.+
T Consensus 454 Tlrfw~~f~ 462 (484)
T KOG0305|consen 454 TLRFWNLFD 462 (484)
T ss_pred cEEeccccC
Confidence 566665544
No 331
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=94.03 E-value=0.26 Score=45.63 Aligned_cols=62 Identities=16% Similarity=0.142 Sum_probs=43.1
Q ss_pred cceEEEcCCCCeEEEEEEeCCCCCeEEEeecCCCCCCCCCcccccCCCCCCCCCeEEEEEEECCCCceEEEEcccCCCCC
Q 008873 4 KTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQ 83 (550)
Q Consensus 4 ~~~~~wSPdg~~lay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~ 83 (550)
.++..||||||.|.-++.= ..+|-||+|.+.+..-+...
T Consensus 94 ls~~~WSPdgrhiL~tseF-----------------------------------~lriTVWSL~t~~~~~~~~p------ 132 (447)
T KOG4497|consen 94 LSSISWSPDGRHILLTSEF-----------------------------------DLRITVWSLNTQKGYLLPHP------ 132 (447)
T ss_pred ceeeeECCCcceEeeeecc-----------------------------------eeEEEEEEeccceeEEeccc------
Confidence 4678899999998765421 13567888888877655332
Q ss_pred CCCCceeEEEEECCCCeEEEEEEecC
Q 008873 84 NYDEEYLARVNWMHGNILTAQVLNRS 109 (550)
Q Consensus 84 ~~~~~~~~~~~wspDg~~i~~~~~r~ 109 (550)
....-..++.|||++.+....|+
T Consensus 133 ---K~~~kg~~f~~dg~f~ai~sRrD 155 (447)
T KOG4497|consen 133 ---KTNVKGYAFHPDGQFCAILSRRD 155 (447)
T ss_pred ---ccCceeEEECCCCceeeeeeccc
Confidence 22234568999999988887664
No 332
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=94.02 E-value=4.8 Score=40.45 Aligned_cols=96 Identities=14% Similarity=0.197 Sum_probs=58.5
Q ss_pred ccEEEEEeCCCcee-ecccccCeEEEEEEeEeecCCEEEEEEcCCCCceeEEEEEEeCCCCCCCCCCCeeeCCCCc-eEE
Q 008873 166 FRHLYLHDINGTCL-GPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTNGKG-KHV 243 (550)
Q Consensus 166 ~~~l~~~~~~~~~~-~~lT~~~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~~v~~~~~g~~~~~~~~~lt~~~~-~~~ 243 (550)
-..||+++.+|... .+|+. ...|.+.. |+++|+.+.+..--. |....|| ++ .+. ++ ...++| ...
T Consensus 250 Eq~Lyll~t~g~s~~V~L~k-~GPVhdv~-W~~s~~EF~VvyGfM-PAkvtif--nl--r~~-----~v-~df~egpRN~ 316 (566)
T KOG2315|consen 250 EQTLYLLATQGESVSVPLLK-EGPVHDVT-WSPSGREFAVVYGFM-PAKVTIF--NL--RGK-----PV-FDFPEGPRNT 316 (566)
T ss_pred cceEEEEEecCceEEEecCC-CCCceEEE-ECCCCCEEEEEEecc-cceEEEE--cC--CCC-----Ee-EeCCCCCccc
Confidence 47899999875443 35653 22345554 999999888776543 2223343 55 442 22 222223 455
Q ss_pred EEECCCCCEEEEeecCCCCCCEEEEEEcCCCc
Q 008873 244 AVLDHNMRNFVDFHDSLDSPPRILLCSLQDGS 275 (550)
Q Consensus 244 ~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~ 275 (550)
+.|+|.|..+++.. =.+-+.++-+.|..+.+
T Consensus 317 ~~fnp~g~ii~lAG-FGNL~G~mEvwDv~n~K 347 (566)
T KOG2315|consen 317 AFFNPHGNIILLAG-FGNLPGDMEVWDVPNRK 347 (566)
T ss_pred eEECCCCCEEEEee-cCCCCCceEEEeccchh
Confidence 67999998776554 33577888888876644
No 333
>PF01764 Lipase_3: Lipase (class 3); InterPro: IPR002921 Triglyceride lipases are lipolytic enzymes that hydrolyse ester linkages of triglycerides []. Lipases are widely distributed in animals, plants and prokaryotes. This family of lipases have been called Class 3 as they are not closely related to other lipase families.; GO: 0004806 triglyceride lipase activity, 0006629 lipid metabolic process; PDB: 1LGY_A 1DTE_A 1DT5_F 4DYH_B 1DU4_C 4EA6_B 1GT6_B 1EIN_A 1DT3_A 1TIB_A ....
Probab=93.97 E-value=0.12 Score=43.11 Aligned_cols=53 Identities=25% Similarity=0.320 Sum_probs=34.8
Q ss_pred hHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhC-------CCeeEEEEEcCCcC
Q 008873 393 AEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARF-------PDVFQCAVSGAPVT 447 (550)
Q Consensus 393 ~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~-------~~~~~~~v~~~~~~ 447 (550)
...+...++.+.++.. ..+|.+.|||+||.+|..++... +..+++....+|..
T Consensus 47 ~~~~~~~l~~~~~~~~--~~~i~itGHSLGGalA~l~a~~l~~~~~~~~~~~~~~~fg~P~~ 106 (140)
T PF01764_consen 47 YDQILDALKELVEKYP--DYSIVITGHSLGGALASLAAADLASHGPSSSSNVKCYTFGAPRV 106 (140)
T ss_dssp HHHHHHHHHHHHHHST--TSEEEEEEETHHHHHHHHHHHHHHHCTTTSTTTEEEEEES-S--
T ss_pred HHHHHHHHHHHHhccc--CccchhhccchHHHHHHHHHHhhhhcccccccceeeeecCCccc
Confidence 4456666666665542 37899999999999998877641 14566666666644
No 334
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=93.85 E-value=7.3 Score=39.24 Aligned_cols=138 Identities=12% Similarity=0.106 Sum_probs=77.2
Q ss_pred EEEEECCCCe-EEEEEE-ecCC------CceEEEEEECCCCceE-EEEEeecCceeeccCccccCCCCCccCCCc--EEE
Q 008873 91 ARVNWMHGNI-LTAQVL-NRSQ------TKLKVLKFDIKTGQRK-VILVEELDSWVNLHDCFTPLDKGVTKYSGG--FIW 159 (550)
Q Consensus 91 ~~~~wspDg~-~i~~~~-~r~~------~~~~l~~~~~~~g~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 159 (550)
....|.+-|. +|+..+ +-+. +...||++++++-+++ .|.. .++. ... .|++.+ |..
T Consensus 221 vqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~k-~GPV-------hdv-----~W~~s~~EF~V 287 (566)
T KOG2315|consen 221 VQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLLK-EGPV-------HDV-----TWSPSGREFAV 287 (566)
T ss_pred eEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecCC-CCCc-------eEE-----EECCCCCEEEE
Confidence 4568999998 444332 2221 2567999999843333 2221 2221 111 234433 544
Q ss_pred EEccCCc--cEEEEEeCCCceeecccccCeEEEEEEeEeecCCEEEEEEcCCCCceeEEEEEEeCCCCCCCCCCCeeeCC
Q 008873 160 ASEKTGF--RHLYLHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTN 237 (550)
Q Consensus 160 ~s~~~g~--~~l~~~~~~~~~~~~lT~~~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~~v~~~~~g~~~~~~~~~lt~ 237 (550)
+- |+ .-+-++|+++.-.-.+-.|..+ -..|+|-|+.|++.+-.+-++...+|-|.- -++++.
T Consensus 288 vy---GfMPAkvtifnlr~~~v~df~egpRN---~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n----------~K~i~~ 351 (566)
T KOG2315|consen 288 VY---GFMPAKVTIFNLRGKPVFDFPEGPRN---TAFFNPHGNIILLAGFGNLPGDMEVWDVPN----------RKLIAK 351 (566)
T ss_pred EE---ecccceEEEEcCCCCEeEeCCCCCcc---ceEECCCCCEEEEeecCCCCCceEEEeccc----------hhhccc
Confidence 32 43 3455677766544444445443 235999999999988776666677774431 123332
Q ss_pred C--CceEEEEECCCCCEEEEee
Q 008873 238 G--KGKHVAVLDHNMRNFVDFH 257 (550)
Q Consensus 238 ~--~~~~~~~~s~dg~~l~~~~ 257 (550)
. .+...+.|+|||++|+-..
T Consensus 352 ~~a~~tt~~eW~PdGe~flTAT 373 (566)
T KOG2315|consen 352 FKAANTTVFEWSPDGEYFLTAT 373 (566)
T ss_pred cccCCceEEEEcCCCcEEEEEe
Confidence 2 2345568999999886543
No 335
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=93.42 E-value=2.5 Score=41.83 Aligned_cols=40 Identities=15% Similarity=0.177 Sum_probs=25.9
Q ss_pred eEEEEEEECCCCceEEEEcccCCCCCCCCCceeEEEEECCCCeEEEEE
Q 008873 58 KVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQV 105 (550)
Q Consensus 58 ~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~wspDg~~i~~~ 105 (550)
..-||.+|..+.+..++..- . ..++....||+|++++...
T Consensus 470 ~iyiy~Vs~~g~~y~r~~k~-------~-gs~ithLDwS~Ds~~~~~~ 509 (626)
T KOG2106|consen 470 HIYIYRVSANGRKYSRVGKC-------S-GSPITHLDWSSDSQFLVSN 509 (626)
T ss_pred eEEEEEECCCCcEEEEeeee-------c-CceeEEeeecCCCceEEec
Confidence 34566667776665555331 1 1578889999999977544
No 336
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=93.37 E-value=6.1 Score=35.97 Aligned_cols=196 Identities=13% Similarity=0.049 Sum_probs=95.4
Q ss_pred CceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceE-EEEEeecCceeeccCccccCCCCCccCCCcEEEEEccCC
Q 008873 87 EEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRK-VILVEELDSWVNLHDCFTPLDKGVTKYSGGFIWASEKTG 165 (550)
Q Consensus 87 ~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g 165 (550)
+..++++.+.-+|.+|+.+.+.. ..+-+|.. .|+.- ..--+.+..|.-+- .|+.+.++--| +
T Consensus 10 ERplTqiKyN~eGDLlFscaKD~-~~~vw~s~---nGerlGty~GHtGavW~~Di----------d~~s~~liTGS---A 72 (327)
T KOG0643|consen 10 ERPLTQIKYNREGDLLFSCAKDS-TPTVWYSL---NGERLGTYDGHTGAVWCCDI----------DWDSKHLITGS---A 72 (327)
T ss_pred ccccceEEecCCCcEEEEecCCC-CceEEEec---CCceeeeecCCCceEEEEEe----------cCCcceeeecc---c
Confidence 45567788888998876665443 23333332 23311 11112223343210 12333233211 1
Q ss_pred ccEEEEEeCCCceeecccccCeEEEEEEeEeecCCEEEEEEcCCCCceeEEEEEEeCCCCCCC-CCC-CeeeC-CCCceE
Q 008873 166 FRHLYLHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHT-LEA-PVKLT-NGKGKH 242 (550)
Q Consensus 166 ~~~l~~~~~~~~~~~~lT~~~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~~v~~~~~g~~~-~~~-~~~lt-~~~~~~ 242 (550)
-..+-+.|.++|+....-.-+-.|... .++.+|+.+.++....-.....|...++..+.... ..+ ...++ ...-..
T Consensus 73 D~t~kLWDv~tGk~la~~k~~~~Vk~~-~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit 151 (327)
T KOG0643|consen 73 DQTAKLWDVETGKQLATWKTNSPVKRV-DFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKIT 151 (327)
T ss_pred cceeEEEEcCCCcEEEEeecCCeeEEE-eeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCcccee
Confidence 233344454555432222222234433 48899998888877533223333333442122100 012 22333 333466
Q ss_pred EEEECCCCCEEEEeecCCCCCCEEEEEEcCCCceeEeccCCCCChhhhhcCCCCCCeEEEEEcC
Q 008873 243 VAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLYEQPLTVPRIKRLQLEPPDIVQIQAN 306 (550)
Q Consensus 243 ~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (550)
++.|+|-++.|+.-..+ ..|..+|+.+|.+...- .......++..++.+-.-..+++.
T Consensus 152 ~a~Wg~l~~~ii~Ghe~----G~is~~da~~g~~~v~s--~~~h~~~Ind~q~s~d~T~FiT~s 209 (327)
T KOG0643|consen 152 SALWGPLGETIIAGHED----GSISIYDARTGKELVDS--DEEHSSKINDLQFSRDRTYFITGS 209 (327)
T ss_pred eeeecccCCEEEEecCC----CcEEEEEcccCceeeec--hhhhccccccccccCCcceEEecc
Confidence 67899999998877655 47888898888643221 112223566666655555555544
No 337
>COG4287 PqaA PhoPQ-activated pathogenicity-related protein [General function prediction only]
Probab=93.28 E-value=0.15 Score=48.16 Aligned_cols=131 Identities=13% Similarity=0.064 Sum_probs=78.5
Q ss_pred HHHHHHHHHHc-CCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCcc--------cccchhhhhccCCCC-
Q 008873 396 QLTGAEWLIKQ-GLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWD--------GYDTFYTEKYMGLPS- 465 (550)
Q Consensus 396 ~~~~~~~l~~~-~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~--------~~~~~~~~~~~g~~~- 465 (550)
+..|++-..++ ..+.-++..|.|-|--|..++..|...|+.++-+-...-+.+.. .|..-|...+.....
T Consensus 217 ~srAMdlAq~eL~q~~Ik~F~VTGaSKRgWttwLTAIaDprv~aIvp~v~D~Lni~a~L~hiyrsYGgnwpi~l~pyyae 296 (507)
T COG4287 217 VSRAMDLAQDELEQVEIKGFMVTGASKRGWTTWLTAIADPRVFAIVPFVYDNLNIEAQLLHIYRSYGGNWPIKLAPYYAE 296 (507)
T ss_pred HHHHHHHHHhhhhheeeeeEEEeccccchHHHHHHHhcCcchhhhhhhHHhhcccHHHHHHHHHhhCCCCCcccchhHhh
Confidence 34444444332 33556789999999999999999987776543322222222211 111111110000000
Q ss_pred ------CCc---cccccCChhhhh-----hcCCCcEEEEecCCCCCCChHHHHHHHHHHHHcCCCeEEEEcCCCCCcC
Q 008873 466 ------EDP---VGYEYSSVMHHV-----HKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMP 529 (550)
Q Consensus 466 ------~~~---~~~~~~~~~~~~-----~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p~~~H~~ 529 (550)
+++ ....-.+|+.+. .++..|-.|+.|..|+..++..+.-+++.| .....+...|+..|..
T Consensus 297 gi~erl~tp~fkqL~~IiDPlay~~try~~RLalpKyivnaSgDdff~pDsa~lYyd~L---PG~kaLrmvPN~~H~~ 371 (507)
T COG4287 297 GIDERLETPLFKQLLEIIDPLAYRNTRYQLRLALPKYIVNASGDDFFVPDSANLYYDDL---PGEKALRMVPNDPHNL 371 (507)
T ss_pred hHHHhhcCHHHHHHHHhhcHHHHhhhhhhhhccccceeecccCCcccCCCccceeeccC---CCceeeeeCCCCcchh
Confidence 011 112223455544 667789999999999999999999998877 3456788899999986
No 338
>KOG4328 consensus WD40 protein [Function unknown]
Probab=93.26 E-value=9 Score=37.61 Aligned_cols=160 Identities=10% Similarity=0.088 Sum_probs=87.4
Q ss_pred CceeEEEEECCCCe-EEEEEEecCCCceEEEEEECCCCceEEEEEee-cCceeeccCccccCCCCCccCCCcEEEEEccC
Q 008873 87 EEYLARVNWMHGNI-LTAQVLNRSQTKLKVLKFDIKTGQRKVILVEE-LDSWVNLHDCFTPLDKGVTKYSGGFIWASEKT 164 (550)
Q Consensus 87 ~~~~~~~~wspDg~-~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 164 (550)
...+..+.++|... .++..+-.+ -|-..|.+++....+.... +..|+. -++.. ..+..+++.+.-
T Consensus 234 s~~Vs~l~F~P~n~s~i~ssSyDG----tiR~~D~~~~i~e~v~s~~~d~~~fs------~~d~~---~e~~~vl~~~~~ 300 (498)
T KOG4328|consen 234 SGPVSGLKFSPANTSQIYSSSYDG----TIRLQDFEGNISEEVLSLDTDNIWFS------SLDFS---AESRSVLFGDNV 300 (498)
T ss_pred CccccceEecCCChhheeeeccCc----eeeeeeecchhhHHHhhcCccceeee------ecccc---CCCccEEEeecc
Confidence 45677888999776 444444333 2667788877655444432 223432 22111 123344444454
Q ss_pred CccEEEEEeCCCceeecccccCeEEEEEEeEeecCCEEEEEEcCCCCceeEEEEEEeCCCCCCCCCCCeeeCCCC---ce
Q 008873 165 GFRHLYLHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTNGK---GK 241 (550)
Q Consensus 165 g~~~l~~~~~~~~~~~~lT~~~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~~v~~~~~g~~~~~~~~~lt~~~---~~ 241 (550)
|+.+++-...++.+...++-.+--+.... ..|-..+++.++..++. ..||-+.-- .++ ..| .|..-+ -+
T Consensus 301 G~f~~iD~R~~~s~~~~~~lh~kKI~sv~-~NP~~p~~laT~s~D~T--~kIWD~R~l-~~K---~sp-~lst~~HrrsV 372 (498)
T KOG4328|consen 301 GNFNVIDLRTDGSEYENLRLHKKKITSVA-LNPVCPWFLATASLDQT--AKIWDLRQL-RGK---ASP-FLSTLPHRRSV 372 (498)
T ss_pred cceEEEEeecCCccchhhhhhhcccceee-cCCCCchheeecccCcc--eeeeehhhh-cCC---CCc-ceeccccccee
Confidence 56566666566665555655544455444 77887788777776653 457733310 221 112 233222 26
Q ss_pred EEEEECCCCCEEEEeecCCCCCCEEEEEEc
Q 008873 242 HVAVLDHNMRNFVDFHDSLDSPPRILLCSL 271 (550)
Q Consensus 242 ~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~ 271 (550)
+++.|||++..|+-++.+ .+|.++|.
T Consensus 373 ~sAyFSPs~gtl~TT~~D----~~IRv~ds 398 (498)
T KOG4328|consen 373 NSAYFSPSGGTLLTTCQD----NEIRVFDS 398 (498)
T ss_pred eeeEEcCCCCceEeeccC----CceEEeec
Confidence 667899999887776654 25555554
No 339
>PLN00181 protein SPA1-RELATED; Provisional
Probab=93.23 E-value=16 Score=40.48 Aligned_cols=180 Identities=10% Similarity=0.025 Sum_probs=85.6
Q ss_pred EEEEEECCCCceEEEEcccCCCCCCCCCceeEEEEECC-CCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCceee
Q 008873 60 RLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMH-GNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVN 138 (550)
Q Consensus 60 ~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~wsp-Dg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~ 138 (550)
.|.+||+.+++.... + ..-...+..++|+| |+.+++...... .|.+.++.+++...........+.
T Consensus 556 ~v~lWd~~~~~~~~~-~-------~~H~~~V~~l~~~p~~~~~L~Sgs~Dg----~v~iWd~~~~~~~~~~~~~~~v~~- 622 (793)
T PLN00181 556 VVQVWDVARSQLVTE-M-------KEHEKRVWSIDYSSADPTLLASGSDDG----SVKLWSINQGVSIGTIKTKANICC- 622 (793)
T ss_pred eEEEEECCCCeEEEE-e-------cCCCCCEEEEEEcCCCCCEEEEEcCCC----EEEEEECCCCcEEEEEecCCCeEE-
Confidence 577889998765332 1 12245688899997 777776664332 366667777664322221111110
Q ss_pred ccCccccCCCCCccCCCc-EEEEEccCCccEEEEEeCCCce--eecccccCeEEEEEEeEeecCCEEEEEEcCCCCceeE
Q 008873 139 LHDCFTPLDKGVTKYSGG-FIWASEKTGFRHLYLHDINGTC--LGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESH 215 (550)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~-~~~~s~~~g~~~l~~~~~~~~~--~~~lT~~~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~ 215 (550)
..+. ++++ ++.....+| .|+++|....+ ...+....-.+.... |. +++.|+ ++..++ ...
T Consensus 623 ----v~~~------~~~g~~latgs~dg--~I~iwD~~~~~~~~~~~~~h~~~V~~v~-f~-~~~~lv-s~s~D~--~ik 685 (793)
T PLN00181 623 ----VQFP------SESGRSLAFGSADH--KVYYYDLRNPKLPLCTMIGHSKTVSYVR-FV-DSSTLV-SSSTDN--TLK 685 (793)
T ss_pred ----EEEe------CCCCCEEEEEeCCC--eEEEEECCCCCccceEecCCCCCEEEEE-Ee-CCCEEE-EEECCC--EEE
Confidence 0110 1222 444443344 67777765432 222332332344443 65 565554 444433 256
Q ss_pred EEEEEeCCCCCCCCCCCeeeCCCC-ceEEEEECCCCCEEEEeecCCCCCCEEEEEEcCCC
Q 008873 216 LYCAKLYPDWNHTLEAPVKLTNGK-GKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDG 274 (550)
Q Consensus 216 l~~v~~~~~g~~~~~~~~~lt~~~-~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g 274 (550)
||.+.....+. .......+.... ....+.+++++++|+....+ ..+.+++....
T Consensus 686 iWd~~~~~~~~-~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D----~~v~iw~~~~~ 740 (793)
T PLN00181 686 LWDLSMSISGI-NETPLHSFMGHTNVKNFVGLSVSDGYIATGSET----NEVFVYHKAFP 740 (793)
T ss_pred EEeCCCCcccc-CCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCC----CEEEEEECCCC
Confidence 66443200000 000122333221 23456789998866443322 36777665433
No 340
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=93.21 E-value=3.8 Score=40.98 Aligned_cols=34 Identities=9% Similarity=0.061 Sum_probs=24.1
Q ss_pred CCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCC
Q 008873 84 NYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKT 122 (550)
Q Consensus 84 ~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~ 122 (550)
......+..++|.|+...++|+... +++.-+++-
T Consensus 142 ~Q~~~~v~c~~W~p~S~~vl~c~g~-----h~~IKpL~~ 175 (737)
T KOG1524|consen 142 VQNEESIRCARWAPNSNSIVFCQGG-----HISIKPLAA 175 (737)
T ss_pred hhcCceeEEEEECCCCCceEEecCC-----eEEEeeccc
Confidence 4556778889999999988887422 366655543
No 341
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.20 E-value=2.3 Score=40.91 Aligned_cols=52 Identities=21% Similarity=0.170 Sum_probs=35.0
Q ss_pred ceEEEcCCCCeEEEEEEeCCCCCeEEEeecCCCCCCCCCcccccCCCCCCCCCeEEEEEEECCCCceEEEEcccCCCCCC
Q 008873 5 TGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQN 84 (550)
Q Consensus 5 ~~~~wSPdg~~lay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~ 84 (550)
..+-|||||+.||++..+ ...||++++|...+-..+ .
T Consensus 190 ~DL~FS~dgk~lasig~d-------------------------------------~~~VW~~~~g~~~a~~t~------~ 226 (398)
T KOG0771|consen 190 KDLDFSPDGKFLASIGAD-------------------------------------SARVWSVNTGAALARKTP------F 226 (398)
T ss_pred ccceeCCCCcEEEEecCC-------------------------------------ceEEEEeccCchhhhcCC------c
Confidence 467799999999998554 246788888843221111 3
Q ss_pred CCCceeEEEEECCCC
Q 008873 85 YDEEYLARVNWMHGN 99 (550)
Q Consensus 85 ~~~~~~~~~~wspDg 99 (550)
+.++.+...+|+-|+
T Consensus 227 ~k~~~~~~cRF~~d~ 241 (398)
T KOG0771|consen 227 SKDEMFSSCRFSVDN 241 (398)
T ss_pred ccchhhhhceecccC
Confidence 445666777888887
No 342
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=93.08 E-value=7.3 Score=36.07 Aligned_cols=165 Identities=16% Similarity=0.095 Sum_probs=82.1
Q ss_pred EEEEEEECCCCceEEEEcccCCCCCCCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCceee
Q 008873 59 VRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVN 138 (550)
Q Consensus 59 ~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~ 138 (550)
..|++|+..+-..-...+ ..-..-+..+.|.+|+..|+.+.... .|+.-|+++|++.+-..... .+.+
T Consensus 69 r~I~LWnv~gdceN~~~l-------kgHsgAVM~l~~~~d~s~i~S~gtDk----~v~~wD~~tG~~~rk~k~h~-~~vN 136 (338)
T KOG0265|consen 69 RAIVLWNVYGDCENFWVL-------KGHSGAVMELHGMRDGSHILSCGTDK----TVRGWDAETGKRIRKHKGHT-SFVN 136 (338)
T ss_pred ceEEEEeccccccceeee-------ccccceeEeeeeccCCCEEEEecCCc----eEEEEecccceeeehhcccc-ceee
Confidence 356777765532211111 22245677889999999887765332 48899999998765443211 2222
Q ss_pred ccCccccCCCCCccCCCcEEEEEc-cCCccEEEEEeCCCceeecccccCeEEEEEEeEeecCCEEEEEEcCCCCceeEEE
Q 008873 139 LHDCFTPLDKGVTKYSGGFIWASE-KTGFRHLYLHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLY 217 (550)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~s~-~~g~~~l~~~~~~~~~~~~lT~~~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~ 217 (550)
. ..|. .-+-.++.|- .+| .+-++|...++..++-..+++...+. |..++..+.-..-.+. .++|
T Consensus 137 s---~~p~------rrg~~lv~SgsdD~--t~kl~D~R~k~~~~t~~~kyqltAv~-f~d~s~qv~sggIdn~---ikvW 201 (338)
T KOG0265|consen 137 S---LDPS------RRGPQLVCSGSDDG--TLKLWDIRKKEAIKTFENKYQLTAVG-FKDTSDQVISGGIDND---IKVW 201 (338)
T ss_pred e---cCcc------ccCCeEEEecCCCc--eEEEEeecccchhhccccceeEEEEE-ecccccceeeccccCc---eeee
Confidence 1 1111 1111333332 233 45566655544444444466666654 7767665553333322 3444
Q ss_pred EEEeCCCCCCCCCCCeeeCCC-CceEEEEECCCCCEEEEee
Q 008873 218 CAKLYPDWNHTLEAPVKLTNG-KGKHVAVLDHNMRNFVDFH 257 (550)
Q Consensus 218 ~v~~~~~g~~~~~~~~~lt~~-~~~~~~~~s~dg~~l~~~~ 257 (550)
...- +++ .-.++.. +-+...+.|++|.++.-..
T Consensus 202 d~r~-~d~------~~~lsGh~DtIt~lsls~~gs~llsns 235 (338)
T KOG0265|consen 202 DLRK-NDG------LYTLSGHADTITGLSLSRYGSFLLSNS 235 (338)
T ss_pred cccc-Ccc------eEEeecccCceeeEEeccCCCcccccc
Confidence 2211 011 0111111 1245567788887764433
No 343
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=93.07 E-value=9.6 Score=37.36 Aligned_cols=151 Identities=15% Similarity=0.150 Sum_probs=72.7
Q ss_pred EEEEEEECCCCceEEEEcccCCCCCCCCCc-eeEEEEECCCCeE--EEEEEecCC--CceEEEEEECCCCceEEEEEeec
Q 008873 59 VRLGVVSAAGGPVSWMDLQCGGTDQNYDEE-YLARVNWMHGNIL--TAQVLNRSQ--TKLKVLKFDIKTGQRKVILVEEL 133 (550)
Q Consensus 59 ~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~wspDg~~--i~~~~~r~~--~~~~l~~~~~~~g~~~~l~~~~~ 133 (550)
.-|++|||+++....+..+ ....- ....+.+ +|+. |+..++|.. +.-.||.++.++|..+.++....
T Consensus 78 ~GL~VYdL~Gk~lq~~~~G------r~NNVDvrygf~l--~g~~vDlavas~R~~g~n~l~~f~id~~~g~L~~v~~~~~ 149 (381)
T PF02333_consen 78 GGLYVYDLDGKELQSLPVG------RPNNVDVRYGFPL--NGKTVDLAVASDRSDGRNSLRLFRIDPDTGELTDVTDPAA 149 (381)
T ss_dssp TEEEEEETTS-EEEEE-SS-------EEEEEEEEEEEE--TTEEEEEEEEEE-CCCT-EEEEEEEETTTTEEEE-CBTTC
T ss_pred CCEEEEcCCCcEEEeecCC------Ccceeeeecceec--CCceEEEEEEecCcCCCCeEEEEEecCCCCcceEcCCCCc
Confidence 3599999999988877442 11010 1122233 5663 667788864 45689999998887655542111
Q ss_pred CceeeccCccccCCCCCccCCCcEEEEEccCCccEEEEEeCCC-c-----eeecccccCeEEEEEEeEeecCCEEEEEEc
Q 008873 134 DSWVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDING-T-----CLGPITEGDWMVEQIVGVNEASGQVYFTGT 207 (550)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~~-~-----~~~~lT~~~~~~~~~~~~s~dg~~l~f~~~ 207 (550)
+.-......+..+-.....++.-++|++.++|.-+.|.+..++ + ..|.+.-+. ++.... .+.....||+. .
T Consensus 150 p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~s-Q~EGCV-VDDe~g~LYvg-E 226 (381)
T PF02333_consen 150 PIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKVGS-QPEGCV-VDDETGRLYVG-E 226 (381)
T ss_dssp -EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-SS--EEEEE-EETTTTEEEEE-E
T ss_pred ccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecCCC-cceEEE-EecccCCEEEe-c
Confidence 1000000001111000001122267778888866666665332 2 234443322 445544 66666677765 3
Q ss_pred CCCCceeEEEEEEeCCC
Q 008873 208 LDGPLESHLYCAKLYPD 224 (550)
Q Consensus 208 ~~~~~~~~l~~v~~~~~ 224 (550)
++ ..||+++....
T Consensus 227 E~----~GIW~y~Aep~ 239 (381)
T PF02333_consen 227 ED----VGIWRYDAEPE 239 (381)
T ss_dssp TT----TEEEEEESSCC
T ss_pred Cc----cEEEEEecCCC
Confidence 32 47888887433
No 344
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.03 E-value=7.3 Score=35.95 Aligned_cols=160 Identities=16% Similarity=0.165 Sum_probs=85.7
Q ss_pred EEEEEccCCccEEEEEeCCCce-eecccc-cCeEEEEEEeEeecCCEEEEEEcCCC--CceeEEEEEEeCCCCCCCCCCC
Q 008873 157 FIWASEKTGFRHLYLHDINGTC-LGPITE-GDWMVEQIVGVNEASGQVYFTGTLDG--PLESHLYCAKLYPDWNHTLEAP 232 (550)
Q Consensus 157 ~~~~s~~~g~~~l~~~~~~~~~-~~~lT~-~~~~~~~~~~~s~dg~~l~f~~~~~~--~~~~~l~~v~~~~~g~~~~~~~ 232 (550)
-+++..+.|. .-+++|.++.+ +..+++ .+.+...--.+|+||.+||-+-|.-+ .+-..||.++- +- .++
T Consensus 82 avafARrPGt-f~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~---~f---qrv 154 (366)
T COG3490 82 AVAFARRPGT-FAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDARE---GF---QRV 154 (366)
T ss_pred eEEEEecCCc-eEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEeccc---cc---cee
Confidence 3444455552 24566766643 333333 23333333458999999998887543 33456675542 11 012
Q ss_pred eeeC-CCCceEEEEECCCCCEEEEeecCCC-C-------------CCEEEEEEcCCCceeEeccCCCCChhhhhcCCCCC
Q 008873 233 VKLT-NGKGKHVAVLDHNMRNFVDFHDSLD-S-------------PPRILLCSLQDGSLVLPLYEQPLTVPRIKRLQLEP 297 (550)
Q Consensus 233 ~~lt-~~~~~~~~~~s~dg~~l~~~~s~~~-~-------------p~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~ 297 (550)
-+++ .+-|-|.+.+.+||+.++..-.... . -|.+.+++..+|..+... .+.+.+ ....
T Consensus 155 gE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh----~Lp~~l---~~lS 227 (366)
T COG3490 155 GEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKH----TLPASL---RQLS 227 (366)
T ss_pred cccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhc----cCchhh---hhcc
Confidence 2222 2335688899999999877544221 1 256777776677643221 122222 2223
Q ss_pred CeEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcC
Q 008873 298 PDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYG 336 (550)
Q Consensus 298 ~~~~~~~~~~g~~l~~~~~~P~~~~~~~~~~P~vv~~hG 336 (550)
.+.+.+ ..||+.+.+.-|.-+. ..+|.+|-.|-
T Consensus 228 iRHld~-g~dgtvwfgcQy~G~~-----~d~ppLvg~~~ 260 (366)
T COG3490 228 IRHLDI-GRDGTVWFGCQYRGPR-----NDLPPLVGHFR 260 (366)
T ss_pred eeeeee-CCCCcEEEEEEeeCCC-----ccCCcceeecc
Confidence 344444 3588888887775433 24566665544
No 345
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=92.92 E-value=7.6 Score=35.84 Aligned_cols=236 Identities=12% Similarity=0.068 Sum_probs=118.7
Q ss_pred cceEEEcCCCCeEEEEEEeCCCCCeEEEeecCCCCCCCCCcccccCCCCCCCCCeEEEEEEECCC-CceEEEEcccCCCC
Q 008873 4 KTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAG-GPVSWMDLQCGGTD 82 (550)
Q Consensus 4 ~~~~~wSPdg~~lay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~-~~~~~l~~~~~~~~ 82 (550)
-.++-||+|+|+|+=.+.|. .|.|||.-| .|...+++.
T Consensus 58 i~~~~ws~Dsr~ivSaSqDG------------------------------------klIvWDs~TtnK~haipl~----- 96 (343)
T KOG0286|consen 58 IYAMDWSTDSRRIVSASQDG------------------------------------KLIVWDSFTTNKVHAIPLP----- 96 (343)
T ss_pred eeeeEecCCcCeEEeeccCC------------------------------------eEEEEEcccccceeEEecC-----
Confidence 35788999999998765552 467888876 466666553
Q ss_pred CCCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECC--CCceEEEEEeec-CceeeccCccccCCCCCccCCCcEEE
Q 008873 83 QNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIK--TGQRKVILVEEL-DSWVNLHDCFTPLDKGVTKYSGGFIW 159 (550)
Q Consensus 83 ~~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~--~g~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (550)
..-+..-++||.|..++-- .-.+.--||.+..+ .|..+.-....+ .+++.. -.+ .+|.-+.
T Consensus 97 ----s~WVMtCA~sPSg~~VAcG--GLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylSc---C~f-------~dD~~il 160 (343)
T KOG0286|consen 97 ----SSWVMTCAYSPSGNFVACG--GLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSC---CRF-------LDDNHIL 160 (343)
T ss_pred ----ceeEEEEEECCCCCeEEec--CcCceeEEEecccccccccceeeeeecCccceeEE---EEE-------cCCCceE
Confidence 2234456899999977543 22233446666543 222221111111 122111 011 1233333
Q ss_pred EEccCCccEEEEEeCCCceee-cccccCeEEEEEEeEee-cCCEEEEEEcCCCCceeEEEEEEeCCCCCCCCCCCeeeCC
Q 008873 160 ASEKTGFRHLYLHDINGTCLG-PITEGDWMVEQIVGVNE-ASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTN 237 (550)
Q Consensus 160 ~s~~~g~~~l~~~~~~~~~~~-~lT~~~~~~~~~~~~s~-dg~~l~f~~~~~~~~~~~l~~v~~~~~g~~~~~~~~~lt~ 237 (550)
.+ +|-....+.|.++++.. .+..+..+|-.. .++| +++ .++++.-+. ...||-+.- +. -.+.+..
T Consensus 161 T~--SGD~TCalWDie~g~~~~~f~GH~gDV~sl-sl~p~~~n-tFvSg~cD~--~aklWD~R~---~~----c~qtF~g 227 (343)
T KOG0286|consen 161 TG--SGDMTCALWDIETGQQTQVFHGHTGDVMSL-SLSPSDGN-TFVSGGCDK--SAKLWDVRS---GQ----CVQTFEG 227 (343)
T ss_pred ec--CCCceEEEEEcccceEEEEecCCcccEEEE-ecCCCCCC-eEEeccccc--ceeeeeccC---cc----eeEeecc
Confidence 32 35556667777776543 333334455444 3677 655 444544443 256663332 21 1122221
Q ss_pred C-CceEEEEECCCCCEEEEeecCCCCCCEEEEEEcCCCceeEeccCCCCChhhhhcCCCCCCeEEEEEcCCCcEEEEE
Q 008873 238 G-KGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLYEQPLTVPRIKRLQLEPPDIVQIQANDGTVLYGA 314 (550)
Q Consensus 238 ~-~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~ 314 (550)
. ..+.++.|=|+|..++ +.| ......++|+.....+...... .....+....+...-++-|-.-+......|
T Consensus 228 hesDINsv~ffP~G~afa-tGS---DD~tcRlyDlRaD~~~a~ys~~-~~~~gitSv~FS~SGRlLfagy~d~~c~vW 300 (343)
T KOG0286|consen 228 HESDINSVRFFPSGDAFA-TGS---DDATCRLYDLRADQELAVYSHD-SIICGITSVAFSKSGRLLFAGYDDFTCNVW 300 (343)
T ss_pred cccccceEEEccCCCeee-ecC---CCceeEEEeecCCcEEeeeccC-cccCCceeEEEcccccEEEeeecCCceeEe
Confidence 1 2366778889996553 222 2235666777766655444332 222344455555555555544344444444
No 346
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=92.89 E-value=5.8 Score=36.53 Aligned_cols=67 Identities=9% Similarity=0.037 Sum_probs=41.6
Q ss_pred ccceEEEcCCCCeEEEEEEeCCCCCeEEEeecCCCCCCCCCcccccCCCCCCCCCeEEEEEEECCCCceEEEEcccCCCC
Q 008873 3 RKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQCGGTD 82 (550)
Q Consensus 3 ~~~~~~wSPdg~~lay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~ 82 (550)
|-..+-|-||+++||-+..+ .|.+++++.++.+.-.+.+..
T Consensus 125 ~i~cvew~Pns~klasm~dn-------------------------------------~i~l~~l~ess~~vaev~ss~-- 165 (370)
T KOG1007|consen 125 KINCVEWEPNSDKLASMDDN-------------------------------------NIVLWSLDESSKIVAEVLSSE-- 165 (370)
T ss_pred ceeeEEEcCCCCeeEEeccC-------------------------------------ceEEEEcccCcchheeecccc--
Confidence 55788999999999886421 356778887655322121110
Q ss_pred CCCCCceeEEEEECC--CCeEEEEEEec
Q 008873 83 QNYDEEYLARVNWMH--GNILTAQVLNR 108 (550)
Q Consensus 83 ~~~~~~~~~~~~wsp--Dg~~i~~~~~r 108 (550)
-......+++-+||| ||..++...++
T Consensus 166 s~e~~~~ftsg~WspHHdgnqv~tt~d~ 193 (370)
T KOG1007|consen 166 SAEMRHSFTSGAWSPHHDGNQVATTSDS 193 (370)
T ss_pred cccccceecccccCCCCccceEEEeCCC
Confidence 022244667789999 88877766544
No 347
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=92.84 E-value=9 Score=36.47 Aligned_cols=119 Identities=15% Similarity=0.136 Sum_probs=65.2
Q ss_pred EEEEECCCCceEEEEcccCCCCCCCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEE-e-ecCceee
Q 008873 61 LGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILV-E-ELDSWVN 138 (550)
Q Consensus 61 l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~-~-~~~~~~~ 138 (550)
-++|++.+|+.. ..+ +.-...+....||.||.+|+.---.. .|.+....+|..+.-.. + .+-.|..
T Consensus 88 AflW~~~~ge~~-~el-------tgHKDSVt~~~FshdgtlLATGdmsG----~v~v~~~stg~~~~~~~~e~~dieWl~ 155 (399)
T KOG0296|consen 88 AFLWDISTGEFA-GEL-------TGHKDSVTCCSFSHDGTLLATGDMSG----KVLVFKVSTGGEQWKLDQEVEDIEWLK 155 (399)
T ss_pred EEEEEccCCcce-eEe-------cCCCCceEEEEEccCceEEEecCCCc----cEEEEEcccCceEEEeecccCceEEEE
Confidence 478888888732 222 34455788999999999987653222 25555566665543332 2 2225652
Q ss_pred ccCccccCCCCCccCCCc-EEEEEccCCccEEEEEeCCC-ceeecccccCeEEEEEEeEeecCCEEEEEEc
Q 008873 139 LHDCFTPLDKGVTKYSGG-FIWASEKTGFRHLYLHDING-TCLGPITEGDWMVEQIVGVNEASGQVYFTGT 207 (550)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~-~~~~s~~~g~~~l~~~~~~~-~~~~~lT~~~~~~~~~~~~s~dg~~l~f~~~ 207 (550)
|.|.. +++.-..+| .+|++.+.. +..+.+...+-.+.. --+.||||++.-.+.
T Consensus 156 -------------WHp~a~illAG~~DG--svWmw~ip~~~~~kv~~Gh~~~ct~-G~f~pdGKr~~tgy~ 210 (399)
T KOG0296|consen 156 -------------WHPRAHILLAGSTDG--SVWMWQIPSQALCKVMSGHNSPCTC-GEFIPDGKRILTGYD 210 (399)
T ss_pred -------------ecccccEEEeecCCC--cEEEEECCCcceeeEecCCCCCccc-ccccCCCceEEEEec
Confidence 44543 555555556 456666544 333333322222221 136789987765554
No 348
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=92.77 E-value=11 Score=39.02 Aligned_cols=161 Identities=12% Similarity=0.062 Sum_probs=82.8
Q ss_pred CCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCceeeccCccccCCCCCccCCCcEEEEEccC
Q 008873 85 YDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYSGGFIWASEKT 164 (550)
Q Consensus 85 ~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 164 (550)
.....+...+-||||.+|+...-. ++.||.+..+. ..+...-...+...-....+.+ ..+.+.+++.+..
T Consensus 380 k~~~nIs~~aiSPdg~~Ia~st~~---~~~iy~L~~~~-~vk~~~v~~~~~~~~~a~~i~f-----tid~~k~~~~s~~- 449 (691)
T KOG2048|consen 380 KEKENISCAAISPDGNLIAISTVS---RTKIYRLQPDP-NVKVINVDDVPLALLDASAISF-----TIDKNKLFLVSKN- 449 (691)
T ss_pred CCccceeeeccCCCCCEEEEeecc---ceEEEEeccCc-ceeEEEeccchhhhccceeeEE-----EecCceEEEEecc-
Confidence 345567778899999998876422 34599998877 4433332221111100011122 1234445555522
Q ss_pred CccEEEEEeCCCc---eeeccccc-C-eEEEEEEeEeecCCEEEEEEcCCCCceeEEEEEEeCCCCCCCCCCCeeeCCC-
Q 008873 165 GFRHLYLHDINGT---CLGPITEG-D-WMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTNG- 238 (550)
Q Consensus 165 g~~~l~~~~~~~~---~~~~lT~~-~-~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~~v~~~~~g~~~~~~~~~lt~~- 238 (550)
...|..+++++. +...+++. . -.+... ..|+||++|+..+.. ..|+..++. +. +-..|...
T Consensus 450 -~~~le~~el~~ps~kel~~~~~~~~~~~I~~l-~~SsdG~yiaa~~t~-----g~I~v~nl~--~~----~~~~l~~rl 516 (691)
T KOG2048|consen 450 -IFSLEEFELETPSFKELKSIQSQAKCPSISRL-VVSSDGNYIAAISTR-----GQIFVYNLE--TL----ESHLLKVRL 516 (691)
T ss_pred -cceeEEEEecCcchhhhhccccccCCCcceeE-EEcCCCCEEEEEecc-----ceEEEEEcc--cc----eeecchhcc
Confidence 234455554442 23333332 1 122333 489999999988754 356666772 21 22222211
Q ss_pred -CceEEEEEC-CCCCEEEEeecCCCCCCEEEEEEcC
Q 008873 239 -KGKHVAVLD-HNMRNFVDFHDSLDSPPRILLCSLQ 272 (550)
Q Consensus 239 -~~~~~~~~s-~dg~~l~~~~s~~~~p~~l~~~~~~ 272 (550)
.......++ ++-..++...++ .+++-++++
T Consensus 517 n~~vTa~~~~~~~~~~lvvats~----nQv~efdi~ 548 (691)
T KOG2048|consen 517 NIDVTAAAFSPFVRNRLVVATSN----NQVFEFDIE 548 (691)
T ss_pred CcceeeeeccccccCcEEEEecC----CeEEEEecc
Confidence 123444566 344566666554 378888873
No 349
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.35 E-value=9.4 Score=35.50 Aligned_cols=108 Identities=12% Similarity=0.138 Sum_probs=56.2
Q ss_pred cceEEEcCCCCeEEEEEEeCCCCCeEEEeecCCCC-----CCCCCcccccCCCCCC----CCCeEEEEEE--ECCCCc--
Q 008873 4 KTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSS-----VGSEAQEDHAYPFAGA----SNVKVRLGVV--SAAGGP-- 70 (550)
Q Consensus 4 ~~~~~wSPdg~~lay~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~y~~~g~----~~~~~~l~~~--d~~~~~-- 70 (550)
.+++.|+||.+.| |+..+.. ....++...|+-- ..-.+++.|.|--.|. +.-...|+++ |.++..
T Consensus 88 vS~LTynp~~rtL-Fav~n~p-~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~~~~ 165 (316)
T COG3204 88 VSSLTYNPDTRTL-FAVTNKP-AAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADTTVIS 165 (316)
T ss_pred ccceeeCCCcceE-EEecCCC-ceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCccEEe
Confidence 5788999999988 5545432 1122221111110 0123455566644443 1222345544 444322
Q ss_pred --eEEEEcccCCCCCCCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEE
Q 008873 71 --VSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFD 119 (550)
Q Consensus 71 --~~~l~~~~~~~~~~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~ 119 (550)
..+++++.. ...+..+-..+|+|....+++...|. ...||.++
T Consensus 166 ~~~~~i~L~~~----~k~N~GfEGlA~d~~~~~l~~aKEr~--P~~I~~~~ 210 (316)
T COG3204 166 AKVQKIPLGTT----NKKNKGFEGLAWDPVDHRLFVAKERN--PIGIFEVT 210 (316)
T ss_pred ccceEEecccc----CCCCcCceeeecCCCCceEEEEEccC--CcEEEEEe
Confidence 124444321 12255667789999999888877664 44678776
No 350
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=92.28 E-value=9.2 Score=35.24 Aligned_cols=70 Identities=14% Similarity=0.141 Sum_probs=42.1
Q ss_pred cceEEEcCCCCeEEEEEEeCCCCCeEEEeecCCCCCCCCCcccccCCCCCCCCCeEEEEEEECCCCceEEEEcccCCCCC
Q 008873 4 KTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQ 83 (550)
Q Consensus 4 ~~~~~wSPdg~~lay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~ 83 (550)
.+++.|.||.+.|+.+ .|+. ..|+.+++++.-.+++.+.
T Consensus 24 ~SGLTy~pd~~tLfaV-~d~~----------------------------------~~i~els~~G~vlr~i~l~------ 62 (248)
T PF06977_consen 24 LSGLTYNPDTGTLFAV-QDEP----------------------------------GEIYELSLDGKVLRRIPLD------ 62 (248)
T ss_dssp EEEEEEETTTTEEEEE-ETTT----------------------------------TEEEEEETT--EEEEEE-S------
T ss_pred ccccEEcCCCCeEEEE-ECCC----------------------------------CEEEEEcCCCCEEEEEeCC------
Confidence 4789999999998665 4321 2467888886666777663
Q ss_pred CCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEEC
Q 008873 84 NYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDI 120 (550)
Q Consensus 84 ~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~ 120 (550)
. ..-.-.+++..+|++++ ...|.+ .|+.+++
T Consensus 63 -g-~~D~EgI~y~g~~~~vl-~~Er~~---~L~~~~~ 93 (248)
T PF06977_consen 63 -G-FGDYEGITYLGNGRYVL-SEERDQ---RLYIFTI 93 (248)
T ss_dssp -S--SSEEEEEE-STTEEEE-EETTTT---EEEEEEE
T ss_pred -C-CCCceeEEEECCCEEEE-EEcCCC---cEEEEEE
Confidence 1 22344578888887554 445543 4666655
No 351
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=92.24 E-value=3.1 Score=41.15 Aligned_cols=90 Identities=6% Similarity=-0.077 Sum_probs=54.6
Q ss_pred ccEEEEEeCCCceeecccccCeEEEEEEeEeecCCEEEEEEcCCCCceeEEEEEEeCCCCCCCCCCCeeeCCCCceEEEE
Q 008873 166 FRHLYLHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTNGKGKHVAV 245 (550)
Q Consensus 166 ~~~l~~~~~~~~~~~~lT~~~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~~v~~~~~g~~~~~~~~~lt~~~~~~~~~ 245 (550)
..++++....+.+.-+|+..+--|-.. -+++.|++++-++.++- .+.|+.+. |. .+-+..+..-..++.
T Consensus 613 ns~vevlh~skp~kyqlhlheScVLSl-KFa~cGkwfvStGkDnl---LnawrtPy---Ga----siFqskE~SsVlsCD 681 (705)
T KOG0639|consen 613 NSNVEVLHTSKPEKYQLHLHESCVLSL-KFAYCGKWFVSTGKDNL---LNAWRTPY---GA----SIFQSKESSSVLSCD 681 (705)
T ss_pred cCcEEEEecCCccceeecccccEEEEE-EecccCceeeecCchhh---hhhccCcc---cc----ceeeccccCcceeee
Confidence 346777777677777888776555554 48899988775554432 56777665 22 233444333467788
Q ss_pred ECCCCCEEEEeecCCCCCCEEEE
Q 008873 246 LDHNMRNFVDFHDSLDSPPRILL 268 (550)
Q Consensus 246 ~s~dg~~l~~~~s~~~~p~~l~~ 268 (550)
+|.|.++|| +.|+ ..-..+|-
T Consensus 682 IS~ddkyIV-TGSG-dkkATVYe 702 (705)
T KOG0639|consen 682 ISFDDKYIV-TGSG-DKKATVYE 702 (705)
T ss_pred eccCceEEE-ecCC-CcceEEEE
Confidence 999987654 4443 22334443
No 352
>cd00519 Lipase_3 Lipase (class 3). Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation," the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site.
Probab=92.20 E-value=0.27 Score=45.05 Aligned_cols=52 Identities=21% Similarity=0.165 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhC-----CCeeEEEEEcCCcC
Q 008873 394 EDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARF-----PDVFQCAVSGAPVT 447 (550)
Q Consensus 394 ~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~-----~~~~~~~v~~~~~~ 447 (550)
.++...+..+.++. ...+|.+.|||+||.+|..++... +..+.+....+|..
T Consensus 112 ~~~~~~~~~~~~~~--p~~~i~vtGHSLGGaiA~l~a~~l~~~~~~~~i~~~tFg~P~v 168 (229)
T cd00519 112 NQVLPELKSALKQY--PDYKIIVTGHSLGGALASLLALDLRLRGPGSDVTVYTFGQPRV 168 (229)
T ss_pred HHHHHHHHHHHhhC--CCceEEEEccCHHHHHHHHHHHHHHhhCCCCceEEEEeCCCCC
Confidence 44555555554442 346899999999999998877642 33456666566543
No 353
>PF02089 Palm_thioest: Palmitoyl protein thioesterase; InterPro: IPR002472 Neuronal ceroid lipofuscinoses (NCL) represent a group of encephalopathies that occur in 1 in 12,500 children. Mutations in the palmitoyl protein thioesterase gene causing infantile neuronal ceroid lipofuscinosis []. The most common mutation results in intracellular accumulation of the polypeptide and undetectable enzyme activity in the brain. Direct sequencing of cDNAs derived from brain RNA of INCL patients has shown a mis-sense transversion of A to T at nucleotide position 364, which results in substitution of Trp for Arg at position 122 in the protein - Arg 122 is immediately adjacent to a lipase consensus sequence that contains the putative active site Ser of PPT. The occurrence of this and two other independent mutations in the PPT gene strongly suggests that defects in this gene cause INCL.; GO: 0008474 palmitoyl-(protein) hydrolase activity, 0006464 protein modification process; PDB: 3GRO_B 1PJA_A 1EXW_A 1EH5_A 1EI9_A.
Probab=92.06 E-value=1.3 Score=41.20 Aligned_cols=107 Identities=17% Similarity=0.155 Sum_probs=47.5
Q ss_pred CCceEEEEEcCCCCceeecccccccchhHhHHHHh--CCcEEEEECCCCCCCCchhhHHHHhhccCCCchHHHHHHHHHH
Q 008873 326 PPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRS--KGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWL 403 (550)
Q Consensus 326 ~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~--~G~~vv~~d~rG~g~~~~~~~~~~~~~~~~~~~~D~~~~~~~l 403 (550)
.+.|+|| .||-+.+-. +. ..+....+++.+ -|..|.+++. |.+...+ -......+ +.++++.+...
T Consensus 4 ~~~PvVi-wHGmGD~~~--~~--~~m~~i~~~i~~~~PG~yV~si~i-g~~~~~D-~~~s~f~~-----v~~Qv~~vc~~ 71 (279)
T PF02089_consen 4 SPLPVVI-WHGMGDSCC--NP--SSMGSIKELIEEQHPGTYVHSIEI-GNDPSED-VENSFFGN-----VNDQVEQVCEQ 71 (279)
T ss_dssp SS--EEE-E--TT--S----T--TTHHHHHHHHHHHSTT--EEE--S-SSSHHHH-HHHHHHSH-----HHHHHHHHHHH
T ss_pred CCCcEEE-EEcCccccC--Ch--hHHHHHHHHHHHhCCCceEEEEEE-CCCcchh-hhhhHHHH-----HHHHHHHHHHH
Confidence 4567766 699432211 00 022323333333 3788888876 3321111 11111121 45555544444
Q ss_pred HH-cCCCCCCceEEEEechhHHHHHHHHhhCCC-eeEEEEEcCC
Q 008873 404 IK-QGLAKVGHIGLYGWSYGGYLSAITLARFPD-VFQCAVSGAP 445 (550)
Q Consensus 404 ~~-~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~-~~~~~v~~~~ 445 (550)
++ .+.+. +-+-++|+|.||.+.-.++.+.++ .++-.|+.++
T Consensus 72 l~~~p~L~-~G~~~IGfSQGgl~lRa~vq~c~~~~V~nlISlgg 114 (279)
T PF02089_consen 72 LANDPELA-NGFNAIGFSQGGLFLRAYVQRCNDPPVHNLISLGG 114 (279)
T ss_dssp HHH-GGGT-T-EEEEEETCHHHHHHHHHHH-TSS-EEEEEEES-
T ss_pred HhhChhhh-cceeeeeeccccHHHHHHHHHCCCCCceeEEEecC
Confidence 43 33333 468899999999999888887653 4677777554
No 354
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=92.00 E-value=9.8 Score=34.92 Aligned_cols=168 Identities=11% Similarity=0.094 Sum_probs=87.1
Q ss_pred CCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCceeeccCccccCCCCCccCCC-cEEEEEcc
Q 008873 85 YDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYSG-GFIWASEK 163 (550)
Q Consensus 85 ~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~ 163 (550)
.-.+.+..+..|+||.+++..+ ++. .|.+-|+++|+.++.+......-.. . +.++| .-+....+
T Consensus 61 GHsH~v~dv~~s~dg~~alS~s-wD~---~lrlWDl~~g~~t~~f~GH~~dVls----v-------a~s~dn~qivSGSr 125 (315)
T KOG0279|consen 61 GHSHFVSDVVLSSDGNFALSAS-WDG---TLRLWDLATGESTRRFVGHTKDVLS----V-------AFSTDNRQIVSGSR 125 (315)
T ss_pred ccceEecceEEccCCceEEecc-ccc---eEEEEEecCCcEEEEEEecCCceEE----E-------EecCCCceeecCCC
Confidence 3456788899999999776554 322 2666788999887766532211000 0 11222 12222111
Q ss_pred CCccEEEEEeCCCceeecccccC-eEEEEEEeEeecCCEEEEEEcCCCCceeEEEEEEeCCCCCCCCCCCe-eeCCCCc-
Q 008873 164 TGFRHLYLHDINGTCLGPITEGD-WMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPV-KLTNGKG- 240 (550)
Q Consensus 164 ~g~~~l~~~~~~~~~~~~lT~~~-~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~~v~~~~~g~~~~~~~~-~lt~~~~- 240 (550)
+ ..|-+++.-|...-.++++. .+...-..|+|.....++.+...+. ...+| ++ .+- +.+ ......+
T Consensus 126 D--kTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~Dk-tvKvW--nl--~~~----~l~~~~~gh~~~ 194 (315)
T KOG0279|consen 126 D--KTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDK-TVKVW--NL--RNC----QLRTTFIGHSGY 194 (315)
T ss_pred c--ceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCc-eEEEE--cc--CCc----chhhcccccccc
Confidence 1 23445554454443444432 2222334588886444444443221 25555 44 211 111 1111223
Q ss_pred eEEEEECCCCCEEEEeecCCCCCCEEEEEEcCCCceeEeccC
Q 008873 241 KHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLYE 282 (550)
Q Consensus 241 ~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~~~~~l~~ 282 (550)
...+.+||||...+. .....++++.|+..++.+..+..
T Consensus 195 v~t~~vSpDGslcas----Ggkdg~~~LwdL~~~k~lysl~a 232 (315)
T KOG0279|consen 195 VNTVTVSPDGSLCAS----GGKDGEAMLWDLNEGKNLYSLEA 232 (315)
T ss_pred EEEEEECCCCCEEec----CCCCceEEEEEccCCceeEeccC
Confidence 344589999986543 34556899999988876555443
No 355
>PLN02454 triacylglycerol lipase
Probab=91.78 E-value=0.29 Score=48.06 Aligned_cols=40 Identities=20% Similarity=0.150 Sum_probs=28.7
Q ss_pred hHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhh
Q 008873 393 AEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLAR 432 (550)
Q Consensus 393 ~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~ 432 (550)
.+++...++.+.++..-..-+|.+.|||+||.+|+.+|..
T Consensus 209 r~qvl~~V~~l~~~Yp~~~~sI~vTGHSLGGALAtLaA~d 248 (414)
T PLN02454 209 RSQLLAKIKELLERYKDEKLSIVLTGHSLGASLATLAAFD 248 (414)
T ss_pred HHHHHHHHHHHHHhCCCCCceEEEEecCHHHHHHHHHHHH
Confidence 4556777777776532122359999999999999988753
No 356
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=91.75 E-value=8.9 Score=36.57 Aligned_cols=138 Identities=13% Similarity=0.058 Sum_probs=75.6
Q ss_pred EEEEEECCCCceEEEEcccCCCCCCCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEE-eecCceee
Q 008873 60 RLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILV-EELDSWVN 138 (550)
Q Consensus 60 ~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~-~~~~~~~~ 138 (550)
+||++|+.+=+.-. ++..- .+....+...+.++++-++++=..+. ..+|++.|+.+-+...... ++++- .
T Consensus 107 ~IyIydI~~MklLh-TI~t~----~~n~~gl~AlS~n~~n~ylAyp~s~t--~GdV~l~d~~nl~~v~~I~aH~~~l--A 177 (391)
T KOG2110|consen 107 SIYIYDIKDMKLLH-TIETT----PPNPKGLCALSPNNANCYLAYPGSTT--SGDVVLFDTINLQPVNTINAHKGPL--A 177 (391)
T ss_pred cEEEEecccceeeh-hhhcc----CCCccceEeeccCCCCceEEecCCCC--CceEEEEEcccceeeeEEEecCCce--e
Confidence 58889988754321 22110 12334456566666666887764443 4578888888765443322 22221 0
Q ss_pred ccCccccCCCCCccCCCc--EEEEEccCCccEEEEEeCCCceeecccccCeEE--EEEEeEeecCCEEEEEEcCCCCcee
Q 008873 139 LHDCFTPLDKGVTKYSGG--FIWASEKTGFRHLYLHDINGTCLGPITEGDWMV--EQIVGVNEASGQVYFTGTLDGPLES 214 (550)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~--~~~~s~~~g~~~l~~~~~~~~~~~~lT~~~~~~--~~~~~~s~dg~~l~f~~~~~~~~~~ 214 (550)
.+. .+++| ++-.|+++-.-++|.+ .+|.+...+=+|-.-+ .+. .+++|++.|..+++.+. .
T Consensus 178 ---ala-------fs~~G~llATASeKGTVIRVf~v-~~G~kl~eFRRG~~~~~IySL-~Fs~ds~~L~~sS~TeT---V 242 (391)
T KOG2110|consen 178 ---ALA-------FSPDGTLLATASEKGTVIRVFSV-PEGQKLYEFRRGTYPVSIYSL-SFSPDSQFLAASSNTET---V 242 (391)
T ss_pred ---EEE-------ECCCCCEEEEeccCceEEEEEEc-CCccEeeeeeCCceeeEEEEE-EECCCCCeEEEecCCCe---E
Confidence 111 24444 4445555333344444 3454454555554432 333 58999998888777654 7
Q ss_pred EEEEEEe
Q 008873 215 HLYCAKL 221 (550)
Q Consensus 215 ~l~~v~~ 221 (550)
|+|+++.
T Consensus 243 HiFKL~~ 249 (391)
T KOG2110|consen 243 HIFKLEK 249 (391)
T ss_pred EEEEecc
Confidence 9998875
No 357
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=91.63 E-value=3 Score=41.63 Aligned_cols=56 Identities=4% Similarity=-0.055 Sum_probs=33.5
Q ss_pred EEEEEeEeecCCEEEEEEcCCCCceeEEEEEEeCCCCCCCCCCCeeeCC--CCceEEEEECCCCCEEEEe
Q 008873 189 VEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTN--GKGKHVAVLDHNMRNFVDF 256 (550)
Q Consensus 189 ~~~~~~~s~dg~~l~f~~~~~~~~~~~l~~v~~~~~g~~~~~~~~~lt~--~~~~~~~~~s~dg~~l~~~ 256 (550)
+.++. +|+||+.|+..+.+. ...||..+. . +...+-. ..|...+.||||||+|+.-
T Consensus 293 in~f~-FS~DG~~LA~VSqDG---fLRvF~fdt--~------eLlg~mkSYFGGLLCvcWSPDGKyIvtG 350 (636)
T KOG2394|consen 293 INEFA-FSPDGKYLATVSQDG---FLRIFDFDT--Q------ELLGVMKSYFGGLLCVCWSPDGKYIVTG 350 (636)
T ss_pred cccee-EcCCCceEEEEecCc---eEEEeeccH--H------HHHHHHHhhccceEEEEEcCCccEEEec
Confidence 34454 899999999887653 355554432 0 1111111 1356667899999988643
No 358
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=91.58 E-value=4 Score=38.77 Aligned_cols=95 Identities=13% Similarity=0.123 Sum_probs=56.4
Q ss_pred EEEEEEECCCCceE-EEEcccCCCCCCCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCcee
Q 008873 59 VRLGVVSAAGGPVS-WMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWV 137 (550)
Q Consensus 59 ~~l~~~d~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~~ 137 (550)
.++++||+.+-+.. .+. .-+..+..+++||||..|+..+.++. -|-++.+..|+ ++++..... .
T Consensus 153 GdV~l~d~~nl~~v~~I~---------aH~~~lAalafs~~G~llATASeKGT---VIRVf~v~~G~--kl~eFRRG~-~ 217 (391)
T KOG2110|consen 153 GDVVLFDTINLQPVNTIN---------AHKGPLAALAFSPDGTLLATASEKGT---VIRVFSVPEGQ--KLYEFRRGT-Y 217 (391)
T ss_pred ceEEEEEcccceeeeEEE---------ecCCceeEEEECCCCCEEEEeccCce---EEEEEEcCCcc--EeeeeeCCc-e
Confidence 46888999986543 332 23456788999999999999886653 34444566665 233322111 1
Q ss_pred eccCccccCCCCCccCCCc-EEEEEccCCccEEEEEeC
Q 008873 138 NLHDCFTPLDKGVTKYSGG-FIWASEKTGFRHLYLHDI 174 (550)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~-~~~~s~~~g~~~l~~~~~ 174 (550)
.. ..++- +++++. |+..+...+--|||.++.
T Consensus 218 ~~-~IySL-----~Fs~ds~~L~~sS~TeTVHiFKL~~ 249 (391)
T KOG2110|consen 218 PV-SIYSL-----SFSPDSQFLAASSNTETVHIFKLEK 249 (391)
T ss_pred ee-EEEEE-----EECCCCCeEEEecCCCeEEEEEecc
Confidence 11 11111 224444 776766677789998873
No 359
>COG4247 Phy 3-phytase (myo-inositol-hexaphosphate 3-phosphohydrolase) [Lipid metabolism]
Probab=91.48 E-value=11 Score=34.26 Aligned_cols=64 Identities=16% Similarity=0.114 Sum_probs=41.1
Q ss_pred EEEEEEECCCCceEEEEcccCCCCCCCCCceeEEE--EECCCCe--EEEEEEecCCCceEEEEEECCCCceEEEEEe
Q 008873 59 VRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARV--NWMHGNI--LTAQVLNRSQTKLKVLKFDIKTGQRKVILVE 131 (550)
Q Consensus 59 ~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~--~wspDg~--~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~ 131 (550)
.-|.||||.++..+-+..+ ....... .|--.|+ -|+..++|..+.-.+|.||.+.+..+.|+..
T Consensus 77 ~Gl~VYDLsGkqLqs~~~G---------k~NNVDLrygF~LgG~~idiaaASdR~~~~i~~y~Idp~~~~L~sitD~ 144 (364)
T COG4247 77 AGLRVYDLSGKQLQSVNPG---------KYNNVDLRYGFQLGGQSIDIAAASDRQNDKIVFYKIDPNPQYLESITDS 144 (364)
T ss_pred CCeEEEecCCCeeeecCCC---------cccccccccCcccCCeEEEEEecccccCCeEEEEEeCCCccceeeccCC
Confidence 4478899998877655322 1111111 2333566 4566788887778899999998777777654
No 360
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=91.45 E-value=8.7 Score=37.01 Aligned_cols=54 Identities=13% Similarity=0.205 Sum_probs=39.7
Q ss_pred EEEEEECCCCceEEEEcccCCCCCCCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceE
Q 008873 60 RLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRK 126 (550)
Q Consensus 60 ~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~ 126 (550)
.+.+||+.+|+.. ++++ -...+.+++|+-||.+++..++.. .|-++|..+|+..
T Consensus 155 ~v~iWnv~tgeal-i~l~--------hpd~i~S~sfn~dGs~l~TtckDK----kvRv~dpr~~~~v 208 (472)
T KOG0303|consen 155 TVSIWNVGTGEAL-ITLD--------HPDMVYSMSFNRDGSLLCTTCKDK----KVRVIDPRRGTVV 208 (472)
T ss_pred eEEEEeccCCcee-eecC--------CCCeEEEEEeccCCceeeeecccc----eeEEEcCCCCcEe
Confidence 5788999999864 3332 245778899999999988876443 3778888888754
No 361
>PF03283 PAE: Pectinacetylesterase
Probab=91.16 E-value=0.34 Score=47.36 Aligned_cols=103 Identities=20% Similarity=0.277 Sum_probs=59.1
Q ss_pred hHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHh----hCCC--eeEEEEEcCCcCCccccc------chhhhh-
Q 008873 393 AEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLA----RFPD--VFQCAVSGAPVTSWDGYD------TFYTEK- 459 (550)
Q Consensus 393 ~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~----~~~~--~~~~~v~~~~~~~~~~~~------~~~~~~- 459 (550)
..-+.+++++|..++.-++++|.|.|.|+||+.++.-+- ..|. .++++.-...+.|...+. ..+...
T Consensus 137 ~~i~~avl~~l~~~gl~~a~~vlltG~SAGG~g~~~~~d~~~~~lp~~~~v~~~~DsG~f~d~~~~~~~~~~~~~~~~~~ 216 (361)
T PF03283_consen 137 YRILRAVLDDLLSNGLPNAKQVLLTGCSAGGLGAILHADYVRDRLPSSVKVKCLSDSGFFLDNPDYSGNPCIRSFYSDVV 216 (361)
T ss_pred HHHHHHHHHHHHHhcCcccceEEEeccChHHHHHHHHHHHHHHHhccCceEEEeccccccccccCcccchhHHHHHHHHH
Confidence 455778899999886778899999999999999986553 2342 333333332333332211 111110
Q ss_pred -----ccCCCCCCccccc--cCChhhhhhcCCCcEEEEecCCC
Q 008873 460 -----YMGLPSEDPVGYE--YSSVMHHVHKMKGKLLLVHGMID 495 (550)
Q Consensus 460 -----~~g~~~~~~~~~~--~~~~~~~~~~i~~P~lii~G~~D 495 (550)
....|..-...+. =.-|...+..|++|++|++...|
T Consensus 217 ~~~~~~~~~p~~C~~~~~~~C~f~q~~~~~I~tPlFivns~YD 259 (361)
T PF03283_consen 217 GLQNWSKSLPESCVAQYDPECFFPQYLYPYIKTPLFIVNSLYD 259 (361)
T ss_pred HHHHhhccCCHhHHhccCccccchHHHHhhcCcceeeehhhhC
Confidence 0012221111111 12334556778999999999888
No 362
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=91.02 E-value=17 Score=35.90 Aligned_cols=40 Identities=18% Similarity=0.126 Sum_probs=27.5
Q ss_pred cEEEEEeCCCceeecccccCeEEEEEEeEeecCCEEEEEEcC
Q 008873 167 RHLYLHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGTL 208 (550)
Q Consensus 167 ~~l~~~~~~~~~~~~lT~~~~~~~~~~~~s~dg~~l~f~~~~ 208 (550)
..|+++++++++.+.+..|-.....+. |+++|+ ++++-+.
T Consensus 164 g~i~r~~pdg~~~e~~a~G~rnp~Gl~-~d~~G~-l~~tdn~ 203 (367)
T TIGR02604 164 GGLFRYNPDGGKLRVVAHGFQNPYGHS-VDSWGD-VFFCDND 203 (367)
T ss_pred ceEEEEecCCCeEEEEecCcCCCccce-ECCCCC-EEEEccC
Confidence 369999999988888877643334444 888875 5655443
No 363
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=90.83 E-value=19 Score=35.91 Aligned_cols=161 Identities=9% Similarity=0.013 Sum_probs=89.2
Q ss_pred eEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCceeeccCccccCCCCCccCCCc-EEEEEccCCccE
Q 008873 90 LARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYSGG-FIWASEKTGFRH 168 (550)
Q Consensus 90 ~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~g~~~ 168 (550)
-..+.++||++.++...... ....+..+|.++++...-.. .+ ..+.+ . ..++++ .++..+ .+...
T Consensus 118 P~~~~~~~~~~~vYV~n~~~-~~~~vsvid~~t~~~~~~~~-vG--~~P~~--~-------a~~p~g~~vyv~~-~~~~~ 183 (381)
T COG3391 118 PVGLAVDPDGKYVYVANAGN-GNNTVSVIDAATNKVTATIP-VG--NTPTG--V-------AVDPDGNKVYVTN-SDDNT 183 (381)
T ss_pred CceEEECCCCCEEEEEeccc-CCceEEEEeCCCCeEEEEEe-cC--CCcce--E-------EECCCCCeEEEEe-cCCCe
Confidence 34578999998665553322 23468999998887543311 11 11110 1 123444 566665 34567
Q ss_pred EEEEeCCCceeec------ccccCeEEEEEEeEeecCCEEEEEEcCCCCceeEEEEEEeCCCCCCCCCCCee--eCCCC-
Q 008873 169 LYLHDINGTCLGP------ITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVK--LTNGK- 239 (550)
Q Consensus 169 l~~~~~~~~~~~~------lT~~~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~~v~~~~~g~~~~~~~~~--lt~~~- 239 (550)
|.+++..+....+ +..+... ....++++|+++|..-.... ...+..++.. .. .... ++.+.
T Consensus 184 v~vi~~~~~~v~~~~~~~~~~~~~~P--~~i~v~~~g~~~yV~~~~~~--~~~v~~id~~--~~----~v~~~~~~~~~~ 253 (381)
T COG3391 184 VSVIDTSGNSVVRGSVGSLVGVGTGP--AGIAVDPDGNRVYVANDGSG--SNNVLKIDTA--TG----NVTATDLPVGSG 253 (381)
T ss_pred EEEEeCCCcceeccccccccccCCCC--ceEEECCCCCEEEEEeccCC--CceEEEEeCC--Cc----eEEEeccccccC
Confidence 8888866654443 2112111 12348999999988766442 2467777762 21 1222 12222
Q ss_pred ceEEEEECCCCCEEEEeecCCCCCCEEEEEEcCCCcee
Q 008873 240 GKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLV 277 (550)
Q Consensus 240 ~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~~~ 277 (550)
.-.....+|+|+.+....+. ...+++++..+....
T Consensus 254 ~~~~v~~~p~g~~~yv~~~~---~~~V~vid~~~~~v~ 288 (381)
T COG3391 254 APRGVAVDPAGKAAYVANSQ---GGTVSVIDGATDRVV 288 (381)
T ss_pred CCCceeECCCCCEEEEEecC---CCeEEEEeCCCCcee
Confidence 12334788999876555443 468888887766543
No 364
>PLN02408 phospholipase A1
Probab=90.50 E-value=0.43 Score=46.20 Aligned_cols=39 Identities=18% Similarity=0.096 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhh
Q 008873 394 EDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLAR 432 (550)
Q Consensus 394 ~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~ 432 (550)
+.+.+.++.+.++..-...+|.|.|||+||.+|..++..
T Consensus 182 ~qVl~eI~~ll~~y~~~~~sI~vTGHSLGGALAtLaA~d 220 (365)
T PLN02408 182 EMVREEIARLLQSYGDEPLSLTITGHSLGAALATLTAYD 220 (365)
T ss_pred HHHHHHHHHHHHhcCCCCceEEEeccchHHHHHHHHHHH
Confidence 345566666665532123469999999999999888764
No 365
>PLN02571 triacylglycerol lipase
Probab=90.38 E-value=0.43 Score=46.89 Aligned_cols=39 Identities=18% Similarity=0.234 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhh
Q 008873 394 EDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLAR 432 (550)
Q Consensus 394 ~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~ 432 (550)
+++.+.++.+.++..-..-+|.+.|||+||.+|+.+|..
T Consensus 208 ~qvl~eV~~L~~~y~~e~~sI~VTGHSLGGALAtLaA~d 246 (413)
T PLN02571 208 DQVLNEVGRLVEKYKDEEISITICGHSLGAALATLNAVD 246 (413)
T ss_pred HHHHHHHHHHHHhcCcccccEEEeccchHHHHHHHHHHH
Confidence 456666666665421112379999999999999888763
No 366
>PRK13614 lipoprotein LpqB; Provisional
Probab=90.21 E-value=26 Score=36.67 Aligned_cols=161 Identities=14% Similarity=0.089 Sum_probs=89.1
Q ss_pred eeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCceeeccCccccCCCCCccCCCcEEEEEccCCccE
Q 008873 89 YLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRH 168 (550)
Q Consensus 89 ~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~ 168 (550)
...+++-|+||+.+++.... ...|+.... ++..+.+.+... .-.| +|+.++.+|..+++...+
T Consensus 344 ~~~s~avS~~g~~~A~~~~~---~~~l~~~~~-g~~~~~~~~g~~--------Lt~P-----S~d~~g~vWtv~~g~~~~ 406 (573)
T PRK13614 344 GPASPAESPVSQTVAFLNGS---RTTLYTVSP-GQPARALTSGST--------LTRP-----SFSPQDWVWTAGPGGNGR 406 (573)
T ss_pred cccceeecCCCceEEEecCC---CcEEEEecC-CCcceeeecCCC--------ccCC-----cccCCCCEEEeeCCCCce
Confidence 56678999999998887432 245777765 445555443211 0112 577777888777654456
Q ss_pred EEEEeCCCc-eee-----cccccCe----EEEEEEeEeecCCEEEEEEcCCCCceeEEEEEEeCCCCCCCCCCCeeeCCC
Q 008873 169 LYLHDINGT-CLG-----PITEGDW----MVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTNG 238 (550)
Q Consensus 169 l~~~~~~~~-~~~-----~lT~~~~----~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~~v~~~~~g~~~~~~~~~lt~~ 238 (550)
|.++..++. +.. .+.. +| .+..+. .|.||-++++....++.....|..|--..+| .++.|+..
T Consensus 407 vv~~~~~g~~~~~~~~~~~v~~-~~l~g~~I~~lr-vSrDG~R~Avi~~~~g~~~V~va~V~R~~~G-----~P~~L~~~ 479 (573)
T PRK13614 407 IVAYRPTGVAEGAQAPTVTLTA-DWLAGRTVKELR-VSREGVRALVISEQNGKSRVQVAGIVRNEDG-----TPRELTAP 479 (573)
T ss_pred EEEEecCCCcccccccceeecc-cccCCCeeEEEE-ECCCccEEEEEEEeCCccEEEEEEEEeCCCC-----CeEEccCc
Confidence 666654332 111 1111 22 355554 8999999999876555323344434432222 34454432
Q ss_pred ------CceEEEEECCCCCEEEEeecCCCCCCEEEEEEcCCC
Q 008873 239 ------KGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDG 274 (550)
Q Consensus 239 ------~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g 274 (550)
....+.+|..++..++.. +....-...+++.+..|
T Consensus 480 ~~~~~~~~~~sl~W~~~~sl~V~~-~~~~~~~~~~~v~v~~g 520 (573)
T PRK13614 480 ITLAADSDADTGAWVGDSTVVVTK-ASATSNVVPELLSVDAG 520 (573)
T ss_pred eecccCCCcceeEEcCCCEEEEEe-ccCCCcceEEEEEeCCC
Confidence 124455788777655544 33334456777776434
No 367
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=90.03 E-value=18 Score=34.53 Aligned_cols=162 Identities=16% Similarity=0.151 Sum_probs=87.2
Q ss_pred CCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCceeeccCccccCCCCCccCCCcEEEEEcc-C
Q 008873 86 DEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYSGGFIWASEK-T 164 (550)
Q Consensus 86 ~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-~ 164 (550)
-+..++.+.+-|-|..|+.. .|++. |..-+.++|.+..-.... +.|+-. +.+ ..|+.++.|-. +
T Consensus 192 h~h~vS~V~f~P~gd~ilS~-srD~t---ik~We~~tg~cv~t~~~h-~ewvr~---v~v-------~~DGti~As~s~d 256 (406)
T KOG0295|consen 192 HEHGVSSVFFLPLGDHILSC-SRDNT---IKAWECDTGYCVKTFPGH-SEWVRM---VRV-------NQDGTIIASCSND 256 (406)
T ss_pred cccceeeEEEEecCCeeeec-ccccc---eeEEecccceeEEeccCc-hHhEEE---EEe-------cCCeeEEEecCCC
Confidence 35678899999999877655 34432 666678888775543322 236532 222 45676666543 3
Q ss_pred CccEEEEEeCCCcee-ecccccCeEEEEEEeEee--------------cCCEEEEEEcCCCCceeEEEEEEeCCCCCCCC
Q 008873 165 GFRHLYLHDINGTCL-GPITEGDWMVEQIVGVNE--------------ASGQVYFTGTLDGPLESHLYCAKLYPDWNHTL 229 (550)
Q Consensus 165 g~~~l~~~~~~~~~~-~~lT~~~~~~~~~~~~s~--------------dg~~l~f~~~~~~~~~~~l~~v~~~~~g~~~~ 229 (550)
..-++|.+. +++. ..++..+..+.-+ .|.| ++..+.+...++.. ..+|-|++ |
T Consensus 257 qtl~vW~~~--t~~~k~~lR~hEh~vEci-~wap~~~~~~i~~at~~~~~~~~l~s~SrDkt--Ik~wdv~t---g---- 324 (406)
T KOG0295|consen 257 QTLRVWVVA--TKQCKAELREHEHPVECI-AWAPESSYPSISEATGSTNGGQVLGSGSRDKT--IKIWDVST---G---- 324 (406)
T ss_pred ceEEEEEec--cchhhhhhhccccceEEE-EecccccCcchhhccCCCCCccEEEeecccce--EEEEeccC---C----
Confidence 334666664 3322 2344444333322 2332 23345555555442 45554443 2
Q ss_pred CCCeee-C---CCCceEEEEECCCCCEEEEeecCCCCCCEEEEEEcCCCceeEecc
Q 008873 230 EAPVKL-T---NGKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLY 281 (550)
Q Consensus 230 ~~~~~l-t---~~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~~~~~l~ 281 (550)
.+| | ..++.-..+|+|.|++|+-.+.+ ..|.+.|+.+++-.+.+.
T Consensus 325 ---~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDD----ktlrvwdl~~~~cmk~~~ 373 (406)
T KOG0295|consen 325 ---MCLFTLVGHDNWVRGVAFSPGGKYILSCADD----KTLRVWDLKNLQCMKTLE 373 (406)
T ss_pred ---eEEEEEecccceeeeeEEcCCCeEEEEEecC----CcEEEEEeccceeeeccC
Confidence 122 2 23346667899999987544332 367777776665444443
No 368
>PF09910 DUF2139: Uncharacterized protein conserved in archaea (DUF2139); InterPro: IPR016675 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=89.92 E-value=7.9 Score=35.97 Aligned_cols=109 Identities=9% Similarity=-0.031 Sum_probs=70.7
Q ss_pred CCeEEEEEEECCCCceEEEEcccCCCCCCCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCc
Q 008873 56 NVKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDS 135 (550)
Q Consensus 56 ~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~ 135 (550)
|-.++++.+|.++++++.|=.++. .+...+-+-++.+-+.|=...|++.......+.-||.++..+|++++|...+...
T Consensus 75 NKYSHVH~yd~e~~~VrLLWkesi-h~~~~WaGEVSdIlYdP~~D~LLlAR~DGh~nLGvy~ldr~~g~~~~L~~~ps~K 153 (339)
T PF09910_consen 75 NKYSHVHEYDTENDSVRLLWKESI-HDKTKWAGEVSDILYDPYEDRLLLARADGHANLGVYSLDRRTGKAEKLSSNPSLK 153 (339)
T ss_pred eccceEEEEEcCCCeEEEEEeccc-CCccccccchhheeeCCCcCEEEEEecCCcceeeeEEEcccCCceeeccCCCCcC
Confidence 445899999999999876522110 1234555678888999988877777666666667999999999999988754321
Q ss_pred eeeccCccccCCCCCccCCCcEEEEEcc--CCccEEEEEeCCCcee
Q 008873 136 WVNLHDCFTPLDKGVTKYSGGFIWASEK--TGFRHLYLHDINGTCL 179 (550)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~--~g~~~l~~~~~~~~~~ 179 (550)
-. .-.|...|..+. .|...|..+|+.+++.
T Consensus 154 G~--------------~~~D~a~F~i~~~~~g~~~i~~~Dli~~~~ 185 (339)
T PF09910_consen 154 GT--------------LVHDYACFGINNFHKGVSGIHCLDLISGKW 185 (339)
T ss_pred ce--------------EeeeeEEEeccccccCCceEEEEEccCCeE
Confidence 00 011212222221 4567888888766655
No 369
>PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function.
Probab=89.39 E-value=16 Score=38.00 Aligned_cols=41 Identities=10% Similarity=0.070 Sum_probs=27.9
Q ss_pred CCccEEEEEeCCCceeeccccc--CeEEEEEEeEeecCCEEEEEE
Q 008873 164 TGFRHLYLHDINGTCLGPITEG--DWMVEQIVGVNEASGQVYFTG 206 (550)
Q Consensus 164 ~g~~~l~~~~~~~~~~~~lT~~--~~~~~~~~~~s~dg~~l~f~~ 206 (550)
.|.. ++..+...++.+++..+ .-++.++. |+||++.|++..
T Consensus 478 ~G~~-~~~~~~~~g~~~rf~~~P~gaE~tG~~-fspDg~tlFvni 520 (524)
T PF05787_consen 478 DGNN-VWAYDPDTGELKRFLVGPNGAEITGPC-FSPDGRTLFVNI 520 (524)
T ss_pred ccce-eeeccccccceeeeccCCCCcccccce-ECCCCCEEEEEE
Confidence 4544 77777777777766554 33556665 999999988754
No 370
>PF01083 Cutinase: Cutinase; InterPro: IPR000675 Aerial plant organs are protected by a cuticle composed of an insoluble polymeric structural compound, cutin, which is a polyester composed of hydroxy and hydroxyepoxy fatty acids []. Plant pathogenic fungi produce extracellular degradative enzymes [] that play an important role in pathogenesis. They include cutinase, which hydrolyses cutin, facilitating fungus penetration through the cuticle. Inhibition of the enzyme can prevent fungal infection through intact cuticles. Cutin monomers released from the cuticle by small amounts of cutinase on fungal spore surfaces can greatly increase the amount of cutinase secreted by the spore, the mechanism for which process is as yet unknown [, ]. Cutinase is a serine esterase containing the classical Ser, His, Asp triad of serine hydrolases []. The protein belongs to the alpha-beta class, with a central beta-sheet of 5 parallel strands covered by 5 helices on either side of the sheet. The active site cleft is partly covered by 2 thin bridges formed by amino acid side chains, by contrast with the hydrophobic lid possessed by other lipases []. The protein also contains 2 disulphide bridges, which are essential for activity, their cleavage resulting in complete loss of enzymatic activity []. Two cutinase-like proteins (MtCY39.35 and MtCY339.08c) have been found in the genome of the bacteria Mycobacterium tuberculosis.; GO: 0016787 hydrolase activity, 0008152 metabolic process; PDB: 1XZK_A 1XZA_A 1CUD_C 1XZI_A 1XZH_A 1CUF_A 1FFD_A 2CUT_A 1FFA_A 1CUA_A ....
Probab=89.32 E-value=1.3 Score=38.68 Aligned_cols=75 Identities=15% Similarity=0.131 Sum_probs=41.7
Q ss_pred CcEEEEECCCCCCCCchhhHHHHhhccCCCchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhh--C----CC
Q 008873 362 GILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLAR--F----PD 435 (550)
Q Consensus 362 G~~vv~~d~rG~g~~~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~--~----~~ 435 (550)
...+..++|+-..... .+..+... ...++...++...++- -..+|.|.|+|.|+.++..++.. . .+
T Consensus 39 ~~~~~~V~YpA~~~~~-~y~~S~~~-----G~~~~~~~i~~~~~~C--P~~kivl~GYSQGA~V~~~~~~~~~l~~~~~~ 110 (179)
T PF01083_consen 39 SVAVQGVEYPASLGPN-SYGDSVAA-----GVANLVRLIEEYAARC--PNTKIVLAGYSQGAMVVGDALSGDGLPPDVAD 110 (179)
T ss_dssp EEEEEE--S---SCGG-SCHHHHHH-----HHHHHHHHHHHHHHHS--TTSEEEEEEETHHHHHHHHHHHHTTSSHHHHH
T ss_pred eeEEEecCCCCCCCcc-cccccHHH-----HHHHHHHHHHHHHHhC--CCCCEEEEecccccHHHHHHHHhccCChhhhh
Confidence 3666678888654321 12222111 1445555555555442 24699999999999999999876 1 24
Q ss_pred eeEEEEEcC
Q 008873 436 VFQCAVSGA 444 (550)
Q Consensus 436 ~~~~~v~~~ 444 (550)
++.+++++.
T Consensus 111 ~I~avvlfG 119 (179)
T PF01083_consen 111 RIAAVVLFG 119 (179)
T ss_dssp HEEEEEEES
T ss_pred hEEEEEEec
Confidence 567766654
No 371
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=89.22 E-value=22 Score=34.56 Aligned_cols=127 Identities=12% Similarity=0.064 Sum_probs=57.9
Q ss_pred CCCceeEEEEECCC----CeEEEEEEec----CCCceEEEEEECCCC-----ceEEEEEe-ec-CceeeccCccccCCCC
Q 008873 85 YDEEYLARVNWMHG----NILTAQVLNR----SQTKLKVLKFDIKTG-----QRKVILVE-EL-DSWVNLHDCFTPLDKG 149 (550)
Q Consensus 85 ~~~~~~~~~~wspD----g~~i~~~~~r----~~~~~~l~~~~~~~g-----~~~~l~~~-~~-~~~~~~~~~~~~~~~~ 149 (550)
..+.....+++.|+ +.+.+..... ......|+++....+ +.+.|... .. .........+
T Consensus 46 ~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l------ 119 (331)
T PF07995_consen 46 DGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGL------ 119 (331)
T ss_dssp STTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEE------
T ss_pred cccCCcccceeccccCCCCEEEEEEEcccCCCCCcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccc------
Confidence 34556677788885 6644444432 123456777766554 22333322 21 0000000011
Q ss_pred CccCCCcEEEEEccC------------CccEEEEEeCCCc-------------eeecccccCeEEEEEEeEeecCCEEEE
Q 008873 150 VTKYSGGFIWASEKT------------GFRHLYLHDINGT-------------CLGPITEGDWMVEQIVGVNEASGQVYF 204 (550)
Q Consensus 150 ~~~~~~~~~~~s~~~------------g~~~l~~~~~~~~-------------~~~~lT~~~~~~~~~~~~s~dg~~l~f 204 (550)
.+.+|+.+|++-.+ ....|.+++.+|. ..+..+.|-.+..... |+|....|+.
T Consensus 120 -~fgpDG~LYvs~G~~~~~~~~~~~~~~~G~ilri~~dG~~p~dnP~~~~~~~~~~i~A~GlRN~~~~~-~d~~tg~l~~ 197 (331)
T PF07995_consen 120 -AFGPDGKLYVSVGDGGNDDNAQDPNSLRGKILRIDPDGSIPADNPFVGDDGADSEIYAYGLRNPFGLA-FDPNTGRLWA 197 (331)
T ss_dssp -EE-TTSEEEEEEB-TTTGGGGCSTTSSTTEEEEEETTSSB-TTSTTTTSTTSTTTEEEE--SEEEEEE-EETTTTEEEE
T ss_pred -cCCCCCcEEEEeCCCCCcccccccccccceEEEecccCcCCCCCccccCCCceEEEEEeCCCccccEE-EECCCCcEEE
Confidence 34567766665321 1357889988765 2233344444444444 8888456776
Q ss_pred EEcCCCCceeEEEEEE
Q 008873 205 TGTLDGPLESHLYCAK 220 (550)
Q Consensus 205 ~~~~~~~~~~~l~~v~ 220 (550)
.-+..+. .-.|.++.
T Consensus 198 ~d~G~~~-~dein~i~ 212 (331)
T PF07995_consen 198 ADNGPDG-WDEINRIE 212 (331)
T ss_dssp EEE-SSS-SEEEEEE-
T ss_pred EccCCCC-CcEEEEec
Confidence 5443222 24455554
No 372
>PLN02517 phosphatidylcholine-sterol O-acyltransferase
Probab=89.17 E-value=1.2 Score=45.76 Aligned_cols=73 Identities=10% Similarity=-0.003 Sum_probs=40.6
Q ss_pred hhHhHHHHhCCcEEEEECCCCCCCCchhhHHHHh-hccCCCchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHH
Q 008873 352 DMRAQYLRSKGILVWKLDNRGTARRGLKFEASIK-HNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITL 430 (550)
Q Consensus 352 ~~~~~~l~~~G~~vv~~d~rG~g~~~~~~~~~~~-~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~ 430 (550)
..+.+.|++.||. -.|.+|... +|+.+.. ....+.-+..+...|+.+.+.. ...+|.|+||||||.++++.+
T Consensus 159 ~kLIe~L~~iGY~--~~nL~gAPY---DWRls~~~le~rd~YF~rLK~lIE~ay~~n--ggkKVVLV~HSMGglv~lyFL 231 (642)
T PLN02517 159 AVLIANLARIGYE--EKNMYMAAY---DWRLSFQNTEVRDQTLSRLKSNIELMVATN--GGKKVVVVPHSMGVLYFLHFM 231 (642)
T ss_pred HHHHHHHHHcCCC--CCceeeccc---ccccCccchhhhhHHHHHHHHHHHHHHHHc--CCCeEEEEEeCCchHHHHHHH
Confidence 4468889999986 344444321 1111100 0000001344555555554432 246899999999999999876
Q ss_pred h
Q 008873 431 A 431 (550)
Q Consensus 431 ~ 431 (550)
.
T Consensus 232 ~ 232 (642)
T PLN02517 232 K 232 (642)
T ss_pred H
Confidence 5
No 373
>PLN02606 palmitoyl-protein thioesterase
Probab=88.92 E-value=2.9 Score=39.32 Aligned_cols=33 Identities=12% Similarity=-0.060 Sum_probs=25.4
Q ss_pred CceEEEEechhHHHHHHHHhhCCC--eeEEEEEcC
Q 008873 412 GHIGLYGWSYGGYLSAITLARFPD--VFQCAVSGA 444 (550)
Q Consensus 412 ~~i~i~G~S~GG~~a~~~~~~~~~--~~~~~v~~~ 444 (550)
+-+-++|+|.||.+.-.++.+-|+ .++-.|+.+
T Consensus 95 ~G~naIGfSQGglflRa~ierc~~~p~V~nlISlg 129 (306)
T PLN02606 95 EGYNIVAESQGNLVARGLIEFCDNAPPVINYVSLG 129 (306)
T ss_pred CceEEEEEcchhHHHHHHHHHCCCCCCcceEEEec
Confidence 458899999999999888887655 356666654
No 374
>PLN02324 triacylglycerol lipase
Probab=88.80 E-value=0.67 Score=45.51 Aligned_cols=38 Identities=21% Similarity=0.178 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHh
Q 008873 394 EDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLA 431 (550)
Q Consensus 394 ~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~ 431 (550)
+.+.+.++.|.++..-..-+|.+.|||+||.+|+.+|.
T Consensus 197 eqVl~eV~~L~~~Yp~e~~sItvTGHSLGGALAtLaA~ 234 (415)
T PLN02324 197 EQVQGELKRLLELYKNEEISITFTGHSLGAVMSVLSAA 234 (415)
T ss_pred HHHHHHHHHHHHHCCCCCceEEEecCcHHHHHHHHHHH
Confidence 34555666666653211237999999999999988875
No 375
>PF06259 Abhydrolase_8: Alpha/beta hydrolase; InterPro: IPR010427 This is a family of uncharacterised proteins found in Actinobacteria. Computational analysis suggests that they may belong to the alpha-beta hydrolase family of enzymes, as they are predicted to form the core secondary structures and catalytic machinery common to these proteins []. Genomic context suggests that they may function as lipases, controlling the concentration of their putative phospholipid substrates.
Probab=88.77 E-value=1.3 Score=38.20 Aligned_cols=51 Identities=16% Similarity=0.140 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhCCCeeEE-EEEcCC
Q 008873 394 EDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQC-AVSGAP 445 (550)
Q Consensus 394 ~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~-~v~~~~ 445 (550)
.++..+++-|.... ....++.++|||||..++-.++...+..+.. ++..+|
T Consensus 92 ~~L~~f~~gl~a~~-~~~~~~tv~GHSYGS~v~G~A~~~~~~~vddvv~~GSP 143 (177)
T PF06259_consen 92 PRLARFLDGLRATH-GPDAHLTVVGHSYGSTVVGLAAQQGGLRVDDVVLVGSP 143 (177)
T ss_pred HHHHHHHHHhhhhc-CCCCCEEEEEecchhHHHHHHhhhCCCCcccEEEECCC
Confidence 34444444444332 3456899999999999999988763333333 334444
No 376
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=88.76 E-value=15 Score=38.82 Aligned_cols=36 Identities=11% Similarity=-0.065 Sum_probs=24.6
Q ss_pred EEEEECCCCceEEEEcccCCCCCCCCCceeEEEEECCCCeEEEEE
Q 008873 61 LGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQV 105 (550)
Q Consensus 61 l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~wspDg~~i~~~ 105 (550)
+.+|++-..++.-. .+-...++.++++|||+..+.-
T Consensus 434 vRiWsI~d~~Vv~W---------~Dl~~lITAvcy~PdGk~avIG 469 (712)
T KOG0283|consen 434 VRLWSISDKKVVDW---------NDLRDLITAVCYSPDGKGAVIG 469 (712)
T ss_pred eEEeecCcCeeEee---------hhhhhhheeEEeccCCceEEEE
Confidence 45567776655432 3456789999999999965543
No 377
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=88.70 E-value=15 Score=33.92 Aligned_cols=195 Identities=14% Similarity=0.166 Sum_probs=88.4
Q ss_pred ceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCceeeccCccccCCCCCccCCCcEEEEEccCCcc
Q 008873 88 EYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYSGGFIWASEKTGFR 167 (550)
Q Consensus 88 ~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~ 167 (550)
..++.++|.||.+.++.+.+.. ..|+.++.++.-.+++. ..+..-.+ .+..+ .++.|+..+++.+
T Consensus 22 ~e~SGLTy~pd~~tLfaV~d~~---~~i~els~~G~vlr~i~-l~g~~D~E---gI~y~------g~~~~vl~~Er~~-- 86 (248)
T PF06977_consen 22 DELSGLTYNPDTGTLFAVQDEP---GEIYELSLDGKVLRRIP-LDGFGDYE---GITYL------GNGRYVLSEERDQ-- 86 (248)
T ss_dssp S-EEEEEEETTTTEEEEEETTT---TEEEEEETT--EEEEEE--SS-SSEE---EEEE-------STTEEEEEETTTT--
T ss_pred CCccccEEcCCCCeEEEEECCC---CEEEEEcCCCCEEEEEe-CCCCCCce---eEEEE------CCCEEEEEEcCCC--
Confidence 3478899999988887777664 35999998643333332 21111000 01111 1233555665554
Q ss_pred EEEEEeC--CCc-----eeecccc-----cCeEEEEEEeEeecCCEEEEEEcCCCCceeEEEEEEeCCCCCCC-CCCCee
Q 008873 168 HLYLHDI--NGT-----CLGPITE-----GDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHT-LEAPVK 234 (550)
Q Consensus 168 ~l~~~~~--~~~-----~~~~lT~-----~~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~~v~~~~~g~~~-~~~~~~ 234 (550)
.|+.++. .+. +.+.++- ++....+.. |++.++.|++.- +..| ..||.++....+... ......
T Consensus 87 ~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla-~D~~~~~L~v~k-E~~P--~~l~~~~~~~~~~~~~~~~~~~ 162 (248)
T PF06977_consen 87 RLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLA-YDPKTNRLFVAK-ERKP--KRLYEVNGFPGGFDLFVSDDQD 162 (248)
T ss_dssp EEEEEEE----TT--EEEEEEEE---S---SS--EEEE-EETTTTEEEEEE-ESSS--EEEEEEESTT-SS--EEEE-HH
T ss_pred cEEEEEEeccccccchhhceEEecccccCCCcceEEEE-EcCCCCEEEEEe-CCCC--hhhEEEccccCccceeeccccc
Confidence 6666664 221 1222331 233455664 999999988764 3444 678888751111000 000000
Q ss_pred eC----CCCceEEEEECCCCCEEEEeecCCCCCCEEEEEEcCCCceeEeccCCCCChhhhhcCCCCCCeEEEEEcCCC
Q 008873 235 LT----NGKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLYEQPLTVPRIKRLQLEPPDIVQIQANDG 308 (550)
Q Consensus 235 lt----~~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g 308 (550)
+. .-.....+++.|....+.+.... ...|..++. +|+....+.-... ...+ ...++++|=+.+.. +|
T Consensus 163 ~~~~~~~~~d~S~l~~~p~t~~lliLS~e---s~~l~~~d~-~G~~~~~~~L~~g-~~gl-~~~~~QpEGIa~d~-~G 233 (248)
T PF06977_consen 163 LDDDKLFVRDLSGLSYDPRTGHLLILSDE---SRLLLELDR-QGRVVSSLSLDRG-FHGL-SKDIPQPEGIAFDP-DG 233 (248)
T ss_dssp HH-HT--SS---EEEEETTTTEEEEEETT---TTEEEEE-T-T--EEEEEE-STT-GGG--SS---SEEEEEE-T-T-
T ss_pred cccccceeccccceEEcCCCCeEEEEECC---CCeEEEECC-CCCEEEEEEeCCc-ccCc-ccccCCccEEEECC-CC
Confidence 11 00113444666765555544322 247888884 6764443322211 1122 24577889999885 55
No 378
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=88.66 E-value=7.8 Score=37.50 Aligned_cols=106 Identities=8% Similarity=0.087 Sum_probs=60.5
Q ss_pred CceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCceeeccCccccCCCCCccCCCc-EEEEEccCC
Q 008873 87 EEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYSGG-FIWASEKTG 165 (550)
Q Consensus 87 ~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~g 165 (550)
.+.++++.-|+||..++.. .|.. .|-++|..+-+++..+...+.....+.... .++|++ |+..-.-+
T Consensus 341 gg~vtSl~ls~~g~~lLss-sRDd---tl~viDlRt~eI~~~~sA~g~k~asDwtrv-------vfSpd~~YvaAGS~d- 408 (459)
T KOG0288|consen 341 GGRVTSLDLSMDGLELLSS-SRDD---TLKVIDLRTKEIRQTFSAEGFKCASDWTRV-------VFSPDGSYVAAGSAD- 408 (459)
T ss_pred CcceeeEeeccCCeEEeee-cCCC---ceeeeecccccEEEEeecccccccccccee-------EECCCCceeeeccCC-
Confidence 4578899999999966555 3433 277889999888877765433211111111 234444 54442223
Q ss_pred ccEEEEEeCCCceee-ccccc--CeEEEEEEeEeecCCEEEEEE
Q 008873 166 FRHLYLHDINGTCLG-PITEG--DWMVEQIVGVNEASGQVYFTG 206 (550)
Q Consensus 166 ~~~l~~~~~~~~~~~-~lT~~--~~~~~~~~~~s~dg~~l~f~~ 206 (550)
..||+.+..+++.+ +|... +-.+... .|++.|+.++-..
T Consensus 409 -gsv~iW~v~tgKlE~~l~~s~s~~aI~s~-~W~~sG~~Llsad 450 (459)
T KOG0288|consen 409 -GSVYIWSVFTGKLEKVLSLSTSNAAITSL-SWNPSGSGLLSAD 450 (459)
T ss_pred -CcEEEEEccCceEEEEeccCCCCcceEEE-EEcCCCchhhccc
Confidence 46777777777655 33322 2123333 4888887776443
No 379
>PLN00413 triacylglycerol lipase
Probab=88.40 E-value=0.78 Score=45.71 Aligned_cols=35 Identities=26% Similarity=0.265 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHh
Q 008873 395 DQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLA 431 (550)
Q Consensus 395 D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~ 431 (550)
.+...++.+.++. ...+|.+.|||+||.+|..++.
T Consensus 269 ~i~~~Lk~ll~~~--p~~kliVTGHSLGGALAtLaA~ 303 (479)
T PLN00413 269 TILRHLKEIFDQN--PTSKFILSGHSLGGALAILFTA 303 (479)
T ss_pred HHHHHHHHHHHHC--CCCeEEEEecCHHHHHHHHHHH
Confidence 4455555555542 2458999999999999998874
No 380
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=88.31 E-value=41 Score=37.73 Aligned_cols=40 Identities=13% Similarity=0.172 Sum_probs=27.5
Q ss_pred EEEEECCCCceEEEEcccCCCCCCCCCceeEEEEECCCCeEEEEEEecC
Q 008873 61 LGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRS 109 (550)
Q Consensus 61 l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~wspDg~~i~~~~~r~ 109 (550)
|.++|.++.....+. .-+..+...+||||++.++++.++.
T Consensus 92 iilvd~et~~~eivg---------~vd~GI~aaswS~Dee~l~liT~~~ 131 (1265)
T KOG1920|consen 92 IILVDPETLELEIVG---------NVDNGISAASWSPDEELLALITGRQ 131 (1265)
T ss_pred EEEEcccccceeeee---------eccCceEEEeecCCCcEEEEEeCCc
Confidence 455566666554442 2355778899999999998887654
No 381
>PLN02802 triacylglycerol lipase
Probab=88.22 E-value=0.75 Score=46.22 Aligned_cols=39 Identities=18% Similarity=0.182 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhh
Q 008873 394 EDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLAR 432 (550)
Q Consensus 394 ~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~ 432 (550)
++++..++.+.++..-..-+|.|.|||+||.+|..++..
T Consensus 312 eqVl~eV~~Ll~~Y~~e~~sI~VTGHSLGGALAtLaA~d 350 (509)
T PLN02802 312 ESVVGEVRRLMEKYKGEELSITVTGHSLGAALALLVADE 350 (509)
T ss_pred HHHHHHHHHHHHhCCCCcceEEEeccchHHHHHHHHHHH
Confidence 456666777666532122479999999999999887763
No 382
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=88.22 E-value=21 Score=32.95 Aligned_cols=37 Identities=19% Similarity=0.247 Sum_probs=24.9
Q ss_pred ceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEE
Q 008873 88 EYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVI 128 (550)
Q Consensus 88 ~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l 128 (550)
.....++||||+..+++..... .|..+|+.+.+...|
T Consensus 44 PQWRkl~WSpD~tlLa~a~S~G----~i~vfdl~g~~lf~I 80 (282)
T PF15492_consen 44 PQWRKLAWSPDCTLLAYAESTG----TIRVFDLMGSELFVI 80 (282)
T ss_pred chheEEEECCCCcEEEEEcCCC----eEEEEecccceeEEc
Confidence 3455679999999998875443 366667776554443
No 383
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=88.19 E-value=17 Score=38.08 Aligned_cols=44 Identities=11% Similarity=0.007 Sum_probs=26.1
Q ss_pred ccCCccEEEEEeCCCceeecccccCeEEEEEEeEeecCCEEEEEEcC
Q 008873 162 EKTGFRHLYLHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGTL 208 (550)
Q Consensus 162 ~~~g~~~l~~~~~~~~~~~~lT~~~~~~~~~~~~s~dg~~l~f~~~~ 208 (550)
-.+|.-+|.+-. +..++..+..|-.. .+. .|+++|..|++.++.
T Consensus 236 y~nGr~QiMR~e-ND~~Pvv~dtgm~~-vga-kWnh~G~vLAvcG~~ 279 (1189)
T KOG2041|consen 236 YANGRMQIMRSE-NDPEPVVVDTGMKI-VGA-KWNHNGAVLAVCGND 279 (1189)
T ss_pred EcCceehhhhhc-CCCCCeEEecccEe-ecc-eecCCCcEEEEccCc
Confidence 345665565543 23344455555433 333 499999999988874
No 384
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=88.19 E-value=23 Score=33.30 Aligned_cols=76 Identities=14% Similarity=0.132 Sum_probs=47.4
Q ss_pred ceEEEcCCCCeEEEEEEeCCCCCeEEEeecCCCCCCCCCcccccCCCCCCCCCeEEEEEEECCCCceEEEEcccCCCCCC
Q 008873 5 TGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQN 84 (550)
Q Consensus 5 ~~~~wSPdg~~lay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~ 84 (550)
..++|++|++.||-...+ .++++|...+....+..- .+.
T Consensus 14 tchAwn~drt~iAv~~~~------------------------------------~evhiy~~~~~~~w~~~h-----tls 52 (361)
T KOG1523|consen 14 TCHAWNSDRTQIAVSPNN------------------------------------HEVHIYSMLGADLWEPAH-----TLS 52 (361)
T ss_pred eeeeecCCCceEEeccCC------------------------------------ceEEEEEecCCCCceece-----ehh
Confidence 467899999999886443 245667776665332211 123
Q ss_pred CCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCc
Q 008873 85 YDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQ 124 (550)
Q Consensus 85 ~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~ 124 (550)
+-+..++.+.|+|-+..|+......+ ..||... ++|+
T Consensus 53 ~Hd~~vtgvdWap~snrIvtcs~drn--ayVw~~~-~~~~ 89 (361)
T KOG1523|consen 53 EHDKIVTGVDWAPKSNRIVTCSHDRN--AYVWTQP-SGGT 89 (361)
T ss_pred hhCcceeEEeecCCCCceeEccCCCC--ccccccC-CCCe
Confidence 45667888999999988888754322 2355543 4444
No 385
>PLN02633 palmitoyl protein thioesterase family protein
Probab=88.04 E-value=3.2 Score=39.12 Aligned_cols=34 Identities=15% Similarity=0.007 Sum_probs=26.4
Q ss_pred CceEEEEechhHHHHHHHHhhCCC--eeEEEEEcCC
Q 008873 412 GHIGLYGWSYGGYLSAITLARFPD--VFQCAVSGAP 445 (550)
Q Consensus 412 ~~i~i~G~S~GG~~a~~~~~~~~~--~~~~~v~~~~ 445 (550)
+-+-++|+|.||.++-.++.+-++ .++-.|+.++
T Consensus 94 ~G~naIGfSQGGlflRa~ierc~~~p~V~nlISlgg 129 (314)
T PLN02633 94 QGYNIVGRSQGNLVARGLIEFCDGGPPVYNYISLAG 129 (314)
T ss_pred CcEEEEEEccchHHHHHHHHHCCCCCCcceEEEecC
Confidence 458899999999999888887665 3667776544
No 386
>smart00824 PKS_TE Thioesterase. Peptide synthetases are involved in the non-ribosomal synthesis of peptide antibiotics. Next to the operons encoding these enzymes, in almost all cases, are genes that encode proteins that have similarity to the type II fatty acid thioesterases of vertebrates. There are also modules within the peptide synthetases that also share this similarity. With respect to antibiotic production, thioesterases are required for the addition of the last amino acid to the peptide antibiotic, thereby forming a cyclic antibiotic. Thioesterases (non-integrated) have molecular masses of 25-29 kDa.
Probab=87.58 E-value=2.7 Score=37.34 Aligned_cols=77 Identities=23% Similarity=0.069 Sum_probs=44.0
Q ss_pred hHHHHhCCcEEEEECCCCCCCCchhhHHHHhhccCCCchHHHHH-HHHHHHHcCCCCCCceEEEEechhHHHHHHHHhh-
Q 008873 355 AQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLT-GAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLAR- 432 (550)
Q Consensus 355 ~~~l~~~G~~vv~~d~rG~g~~~~~~~~~~~~~~~~~~~~D~~~-~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~- 432 (550)
...+. ..+.|+.++.+|.+..... ....+++.. .++.+.... ...++.++|||+||.++..++.+
T Consensus 19 ~~~l~-~~~~v~~~~~~g~~~~~~~----------~~~~~~~~~~~~~~l~~~~--~~~~~~l~g~s~Gg~~a~~~a~~l 85 (212)
T smart00824 19 AAALR-GRRDVSALPLPGFGPGEPL----------PASADALVEAQAEAVLRAA--GGRPFVLVGHSSGGLLAHAVAARL 85 (212)
T ss_pred HHhcC-CCccEEEecCCCCCCCCCC----------CCCHHHHHHHHHHHHHHhc--CCCCeEEEEECHHHHHHHHHHHHH
Confidence 44443 4689999999988633211 011222222 222232221 24578999999999999877764
Q ss_pred --CCCeeEEEEEcC
Q 008873 433 --FPDVFQCAVSGA 444 (550)
Q Consensus 433 --~~~~~~~~v~~~ 444 (550)
.+..+..++...
T Consensus 86 ~~~~~~~~~l~~~~ 99 (212)
T smart00824 86 EARGIPPAAVVLLD 99 (212)
T ss_pred HhCCCCCcEEEEEc
Confidence 334455555443
No 387
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=87.14 E-value=18 Score=32.78 Aligned_cols=128 Identities=14% Similarity=0.135 Sum_probs=67.2
Q ss_pred EEEEECCCCceEE-EEcccCCCCCCCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCceeec
Q 008873 61 LGVVSAAGGPVSW-MDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNL 139 (550)
Q Consensus 61 l~~~d~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~ 139 (550)
+.+||..+++..+ |.+ ...+.+.-.|+||++|...-.+. |--.++++=+ .|-.-.-+.-++.
T Consensus 167 VRLWD~rTgt~v~sL~~----------~s~VtSlEvs~dG~ilTia~gss-----V~Fwdaksf~--~lKs~k~P~nV~S 229 (334)
T KOG0278|consen 167 VRLWDHRTGTEVQSLEF----------NSPVTSLEVSQDGRILTIAYGSS-----VKFWDAKSFG--LLKSYKMPCNVES 229 (334)
T ss_pred eEEEEeccCcEEEEEec----------CCCCcceeeccCCCEEEEecCce-----eEEecccccc--ceeeccCcccccc
Confidence 5567888876543 333 44566778999999776543221 2223333321 1111111110100
Q ss_pred cCccccCCCCCccCCCc-EEEEEccCCccEEEEEeCCCceeecc-cccCe-EEEEEEeEeecCCEEEEEEcCCCCceeEE
Q 008873 140 HDCFTPLDKGVTKYSGG-FIWASEKTGFRHLYLHDINGTCLGPI-TEGDW-MVEQIVGVNEASGQVYFTGTLDGPLESHL 216 (550)
Q Consensus 140 ~~~~~~~~~~~~~~~~~-~~~~s~~~g~~~l~~~~~~~~~~~~l-T~~~~-~~~~~~~~s~dg~~l~f~~~~~~~~~~~l 216 (550)
. +..|++ +++.-. .-.-+|.+|-.+++..-. ..|.+ .|.-. .+|||| .+|-++++++. ..|
T Consensus 230 -----A-----SL~P~k~~fVaGg--ed~~~~kfDy~TgeEi~~~nkgh~gpVhcV-rFSPdG-E~yAsGSEDGT--irl 293 (334)
T KOG0278|consen 230 -----A-----SLHPKKEFFVAGG--EDFKVYKFDYNTGEEIGSYNKGHFGPVHCV-RFSPDG-ELYASGSEDGT--IRL 293 (334)
T ss_pred -----c-----cccCCCceEEecC--cceEEEEEeccCCceeeecccCCCCceEEE-EECCCC-ceeeccCCCce--EEE
Confidence 0 224444 333322 223577888777765443 34432 23333 489998 58888888775 778
Q ss_pred EEEEe
Q 008873 217 YCAKL 221 (550)
Q Consensus 217 ~~v~~ 221 (550)
|.+..
T Consensus 294 WQt~~ 298 (334)
T KOG0278|consen 294 WQTTP 298 (334)
T ss_pred EEecC
Confidence 87765
No 388
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=87.13 E-value=12 Score=39.38 Aligned_cols=92 Identities=15% Similarity=0.242 Sum_probs=53.4
Q ss_pred ccCCCcEEEEEccCCccEEEEEeCCCceeecccccCeEEEEEEeEeecCCEEEEEEcCCCCceeEEEEEEeCCCCCCCCC
Q 008873 151 TKYSGGFIWASEKTGFRHLYLHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLE 230 (550)
Q Consensus 151 ~~~~~~~~~~s~~~g~~~l~~~~~~~~~~~~lT~~~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~~v~~~~~g~~~~~ 230 (550)
+|+.+.|+..+--+---.||....+ ..++.....++. .-+ .+.|-.+..++++.-++ ...||.+.- .
T Consensus 376 SWSKn~fLLSSSMDKTVRLWh~~~~-~CL~~F~HndfV-TcV-aFnPvDDryFiSGSLD~--KvRiWsI~d----~---- 442 (712)
T KOG0283|consen 376 SWSKNNFLLSSSMDKTVRLWHPGRK-ECLKVFSHNDFV-TCV-AFNPVDDRYFISGSLDG--KVRLWSISD----K---- 442 (712)
T ss_pred ccccCCeeEeccccccEEeecCCCc-ceeeEEecCCee-EEE-EecccCCCcEeeccccc--ceEEeecCc----C----
Confidence 6777667766655555567776532 245566666664 333 37787777777777665 367775431 1
Q ss_pred CCeeeCCC-CceEEEEECCCCCEEEE
Q 008873 231 APVKLTNG-KGKHVAVLDHNMRNFVD 255 (550)
Q Consensus 231 ~~~~lt~~-~~~~~~~~s~dg~~l~~ 255 (550)
++.--+.- +-+..+.++|||+..++
T Consensus 443 ~Vv~W~Dl~~lITAvcy~PdGk~avI 468 (712)
T KOG0283|consen 443 KVVDWNDLRDLITAVCYSPDGKGAVI 468 (712)
T ss_pred eeEeehhhhhhheeEEeccCCceEEE
Confidence 22222221 22455678999987654
No 389
>PLN02162 triacylglycerol lipase
Probab=86.55 E-value=1.1 Score=44.46 Aligned_cols=36 Identities=25% Similarity=0.069 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHh
Q 008873 394 EDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLA 431 (550)
Q Consensus 394 ~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~ 431 (550)
..+...++.+.++. ...++.+.|||+||.+|..+++
T Consensus 262 ~~I~~~L~~lL~k~--p~~kliVTGHSLGGALAtLaAa 297 (475)
T PLN02162 262 YTIRQMLRDKLARN--KNLKYILTGHSLGGALAALFPA 297 (475)
T ss_pred HHHHHHHHHHHHhC--CCceEEEEecChHHHHHHHHHH
Confidence 34445555444432 2458999999999999988754
No 390
>PLN02753 triacylglycerol lipase
Probab=86.23 E-value=1.1 Score=45.19 Aligned_cols=39 Identities=26% Similarity=0.269 Sum_probs=28.0
Q ss_pred hHHHHHHHHHHHHcCCCC---CCceEEEEechhHHHHHHHHh
Q 008873 393 AEDQLTGAEWLIKQGLAK---VGHIGLYGWSYGGYLSAITLA 431 (550)
Q Consensus 393 ~~D~~~~~~~l~~~~~~d---~~~i~i~G~S~GG~~a~~~~~ 431 (550)
.+.+.+.++.|.++..-+ .-+|.|.|||+||.+|+.+|.
T Consensus 290 reQVl~eVkrLl~~Y~~e~~~~~sItVTGHSLGGALAtLaA~ 331 (531)
T PLN02753 290 REQILTEVKRLVEEHGDDDDSDLSITVTGHSLGGALAILSAY 331 (531)
T ss_pred HHHHHHHHHHHHHHcccccCCCceEEEEccCHHHHHHHHHHH
Confidence 345666677776653211 358999999999999998875
No 391
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=86.19 E-value=13 Score=37.05 Aligned_cols=91 Identities=14% Similarity=0.056 Sum_probs=56.2
Q ss_pred EEEEEEECCCCceEEEEcccCCCCCCCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCceee
Q 008873 59 VRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVN 138 (550)
Q Consensus 59 ~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~ 138 (550)
.+..++|.++.....+.. + ...++-+++||||..++..+... .--||.++..+.+-.++-.... ..+
T Consensus 428 G~w~V~d~e~~~lv~~~~--------d-~~~ls~v~ysp~G~~lAvgs~d~--~iyiy~Vs~~g~~y~r~~k~~g-s~i- 494 (626)
T KOG2106|consen 428 GRWFVLDTETQDLVTIHT--------D-NEQLSVVRYSPDGAFLAVGSHDN--HIYIYRVSANGRKYSRVGKCSG-SPI- 494 (626)
T ss_pred ceEEEEecccceeEEEEe--------c-CCceEEEEEcCCCCEEEEecCCC--eEEEEEECCCCcEEEEeeeecC-cee-
Confidence 456778888866555533 2 55678899999999888876543 3357777776655555444322 221
Q ss_pred ccCccccCCCCCccCCCcEEEEEccCCccEEEE
Q 008873 139 LHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYL 171 (550)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~ 171 (550)
.-+ .|+.|+-++.++..++.-||-
T Consensus 495 -----thL----DwS~Ds~~~~~~S~d~eiLyW 518 (626)
T KOG2106|consen 495 -----THL----DWSSDSQFLVSNSGDYEILYW 518 (626)
T ss_pred -----EEe----eecCCCceEEeccCceEEEEE
Confidence 111 367777555666666665665
No 392
>KOG2369 consensus Lecithin:cholesterol acyltransferase (LCAT)/Acyl-ceramide synthase [Lipid transport and metabolism]
Probab=86.04 E-value=2 Score=42.56 Aligned_cols=74 Identities=15% Similarity=-0.012 Sum_probs=43.5
Q ss_pred chhHhHHHHhCCcE------EEEECCCCCCCCchhhHHHHhhccCCCchHHHHHHHHHHHHcCCCCCCceEEEEechhHH
Q 008873 351 VDMRAQYLRSKGIL------VWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGY 424 (550)
Q Consensus 351 ~~~~~~~l~~~G~~------vv~~d~rG~g~~~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~ 424 (550)
|..+.+.|+.-||. -+.+|.|-+-...+ . ... -+..+..-++..-+.. ...+|.|++|||||.
T Consensus 126 w~~~i~~lv~~GYe~~~~l~ga~YDwRls~~~~e----~-rd~----yl~kLK~~iE~~~~~~--G~kkVvlisHSMG~l 194 (473)
T KOG2369|consen 126 WHELIENLVGIGYERGKTLFGAPYDWRLSYHNSE----E-RDQ----YLSKLKKKIETMYKLN--GGKKVVLISHSMGGL 194 (473)
T ss_pred HHHHHHHHHhhCcccCceeeccccchhhccCChh----H-HHH----HHHHHHHHHHHHHHHc--CCCceEEEecCCccH
Confidence 34456778887876 35567774321110 0 000 1333444444443332 347999999999999
Q ss_pred HHHHHHhhCCC
Q 008873 425 LSAITLARFPD 435 (550)
Q Consensus 425 ~a~~~~~~~~~ 435 (550)
+.++.+-.++.
T Consensus 195 ~~lyFl~w~~~ 205 (473)
T KOG2369|consen 195 YVLYFLKWVEA 205 (473)
T ss_pred HHHHHHhcccc
Confidence 99998876655
No 393
>PLN02761 lipase class 3 family protein
Probab=86.03 E-value=1.2 Score=45.00 Aligned_cols=39 Identities=21% Similarity=0.152 Sum_probs=27.6
Q ss_pred hHHHHHHHHHHHHcCC---CC-CCceEEEEechhHHHHHHHHh
Q 008873 393 AEDQLTGAEWLIKQGL---AK-VGHIGLYGWSYGGYLSAITLA 431 (550)
Q Consensus 393 ~~D~~~~~~~l~~~~~---~d-~~~i~i~G~S~GG~~a~~~~~ 431 (550)
.++++..++.|.++.. -+ .-+|.|.|||+||.+|+.+|.
T Consensus 271 R~qVl~eV~rL~~~Y~~~~k~e~~sItVTGHSLGGALAtLaA~ 313 (527)
T PLN02761 271 REQVLAEVKRLVEYYGTEEEGHEISITVTGHSLGASLALVSAY 313 (527)
T ss_pred HHHHHHHHHHHHHhcccccCCCCceEEEeccchHHHHHHHHHH
Confidence 3456666777765431 12 247999999999999998774
No 394
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=85.74 E-value=8.5 Score=37.25 Aligned_cols=64 Identities=16% Similarity=0.051 Sum_probs=40.8
Q ss_pred EEEEEECCCCceEEEEcccCCCCCCCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEe
Q 008873 60 RLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVE 131 (550)
Q Consensus 60 ~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~ 131 (550)
.|-++|+.+.+++..-...+ .......+.+.+||||.+++.-+... .||+-++.+|++..+...
T Consensus 364 tl~viDlRt~eI~~~~sA~g----~k~asDwtrvvfSpd~~YvaAGS~dg----sv~iW~v~tgKlE~~l~~ 427 (459)
T KOG0288|consen 364 TLKVIDLRTKEIRQTFSAEG----FKCASDWTRVVFSPDGSYVAAGSADG----SVYIWSVFTGKLEKVLSL 427 (459)
T ss_pred ceeeeecccccEEEEeeccc----cccccccceeEECCCCceeeeccCCC----cEEEEEccCceEEEEecc
Confidence 35678888887765422111 01112366789999999877654332 388889999998765543
No 395
>PLN02934 triacylglycerol lipase
Probab=85.72 E-value=1.2 Score=44.77 Aligned_cols=36 Identities=22% Similarity=0.211 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHh
Q 008873 394 EDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLA 431 (550)
Q Consensus 394 ~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~ 431 (550)
..+...++.+.++. ...+|.+.|||+||.+|..++.
T Consensus 305 ~~v~~~lk~ll~~~--p~~kIvVTGHSLGGALAtLaA~ 340 (515)
T PLN02934 305 YAVRSKLKSLLKEH--KNAKFVVTGHSLGGALAILFPT 340 (515)
T ss_pred HHHHHHHHHHHHHC--CCCeEEEeccccHHHHHHHHHH
Confidence 34556666665553 2358999999999999988864
No 396
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=84.81 E-value=33 Score=31.84 Aligned_cols=142 Identities=13% Similarity=0.081 Sum_probs=69.9
Q ss_pred CeEEEEEEECCCCceEEEEcccCCCCCCCCCceeEEEEECCCCe-EEEEEEecCCCceEEEEEECCCCceEE---EEEee
Q 008873 57 VKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNI-LTAQVLNRSQTKLKVLKFDIKTGQRKV---ILVEE 132 (550)
Q Consensus 57 ~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~wspDg~-~i~~~~~r~~~~~~l~~~~~~~g~~~~---l~~~~ 132 (550)
-+++|.-+|.++++...... .+-.+..+-+.|.||.+ ..--..--..+..+||++..+.++... |....
T Consensus 73 Nkvqiv~ld~~s~e~~~~a~-------fd~~YP~tK~~wiPd~~g~~pdlLATs~D~LRlWri~~ee~~~~~~~~L~~~k 145 (364)
T KOG0290|consen 73 NKVQIVQLDEDSGELVEDAN-------FDHPYPVTKLMWIPDSKGVYPDLLATSSDFLRLWRIGDEESRVELQSVLNNNK 145 (364)
T ss_pred CeeEEEEEccCCCceeccCC-------CCCCCCccceEecCCccccCcchhhcccCeEEEEeccCcCCceehhhhhccCc
Confidence 35677777777776654321 23344566778999975 211111111234579999876655432 11111
Q ss_pred cCceeeccCccccCCCCCccCCCcEEEEEccCCccEEEEEeC--CCceeecccccCeEEEEEEeEeecCCEEEEEEcCCC
Q 008873 133 LDSWVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDI--NGTCLGPITEGDWMVEQIVGVNEASGQVYFTGTLDG 210 (550)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~--~~~~~~~lT~~~~~~~~~~~~s~dg~~l~f~~~~~~ 210 (550)
...+ ..|.-+|.+.. .++. ++-.|.-+--=.||-+.. .+.-.+||-.++-+|.++. |+.++..++.+...++
T Consensus 146 ns~~--~aPlTSFDWne--~dp~-~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIa-f~~~s~~~FASvgaDG 219 (364)
T KOG0290|consen 146 NSEF--CAPLTSFDWNE--VDPN-LIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIA-FLKGSRDVFASVGADG 219 (364)
T ss_pred cccc--CCccccccccc--CCcc-eeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEE-eccCccceEEEecCCC
Confidence 1111 01111221111 1222 444433222223343332 2223567777787888876 8877777776666665
Q ss_pred C
Q 008873 211 P 211 (550)
Q Consensus 211 ~ 211 (550)
.
T Consensus 220 S 220 (364)
T KOG0290|consen 220 S 220 (364)
T ss_pred c
Confidence 3
No 397
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=84.68 E-value=32 Score=31.55 Aligned_cols=163 Identities=13% Similarity=0.085 Sum_probs=80.3
Q ss_pred EEEEEECCCCceEEEEcccCCCCCCCCCceeEEEEECCCCeEEEEEEecCC-CceEEEEEECCC-------Cce-EEEEE
Q 008873 60 RLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQ-TKLKVLKFDIKT-------GQR-KVILV 130 (550)
Q Consensus 60 ~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~wspDg~~i~~~~~r~~-~~~~l~~~~~~~-------g~~-~~l~~ 130 (550)
.+.+||.++|+.... ....-.+..+.||++|.+++++.+..- ....|.++++.. .++ ..|..
T Consensus 75 t~kLWDv~tGk~la~---------~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t 145 (327)
T KOG0643|consen 75 TAKLWDVETGKQLAT---------WKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPT 145 (327)
T ss_pred eeEEEEcCCCcEEEE---------eecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecC
Confidence 356789999876422 123445677889999998887765433 334566666552 221 22222
Q ss_pred eecCceeeccCccccCCCCCccCC-CcEEEEEccCCccEEEEEeCCCcee-ecc-cccCeEEEEEEeEeecCCEEEEEEc
Q 008873 131 EELDSWVNLHDCFTPLDKGVTKYS-GGFIWASEKTGFRHLYLHDINGTCL-GPI-TEGDWMVEQIVGVNEASGQVYFTGT 207 (550)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~g~~~l~~~~~~~~~~-~~l-T~~~~~~~~~~~~s~dg~~l~f~~~ 207 (550)
..+. .-+. .|++ +.+++.-..+| .|-.+|+.+++. ..- ....-.+.+. ..|+|.. .++++.
T Consensus 146 ~~sk-------it~a-----~Wg~l~~~ii~Ghe~G--~is~~da~~g~~~v~s~~~h~~~Ind~-q~s~d~T-~FiT~s 209 (327)
T KOG0643|consen 146 PDSK-------ITSA-----LWGPLGETIIAGHEDG--SISIYDARTGKELVDSDEEHSSKINDL-QFSRDRT-YFITGS 209 (327)
T ss_pred Cccc-------eeee-----eecccCCEEEEecCCC--cEEEEEcccCceeeechhhhccccccc-cccCCcc-eEEecc
Confidence 1111 0000 2344 33666655555 466677665532 111 1111223333 4788864 444555
Q ss_pred CCCCceeEEEEEEeCCCCCCCCCCCeeeCCCCceEEEEECCCCCEEEEe
Q 008873 208 LDGPLESHLYCAKLYPDWNHTLEAPVKLTNGKGKHVAVLDHNMRNFVDF 256 (550)
Q Consensus 208 ~~~~~~~~l~~v~~~~~g~~~~~~~~~lt~~~~~~~~~~s~dg~~l~~~ 256 (550)
.+.. ..|+-+.. -. -.+......-....+++|-...+++.
T Consensus 210 ~Dtt--akl~D~~t---l~----v~Kty~te~PvN~aaisP~~d~Vilg 249 (327)
T KOG0643|consen 210 KDTT--AKLVDVRT---LE----VLKTYTTERPVNTAAISPLLDHVILG 249 (327)
T ss_pred cCcc--ceeeeccc---ee----eEEEeeecccccceecccccceEEec
Confidence 4432 44443221 00 11222222235666788877766544
No 398
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=84.63 E-value=28 Score=34.56 Aligned_cols=178 Identities=15% Similarity=0.178 Sum_probs=92.7
Q ss_pred EEEEEEECCCCceEEEEcccCCCCCCCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCce-EEEEEeecCcee
Q 008873 59 VRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQR-KVILVEELDSWV 137 (550)
Q Consensus 59 ~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~-~~l~~~~~~~~~ 137 (550)
+++-+|+..+-...+. + ..+...++++.+-.||++++.. ...+. +-++|.++..+ +.+.....+.-.
T Consensus 48 ~rvqly~~~~~~~~k~-~-------srFk~~v~s~~fR~DG~LlaaG--D~sG~--V~vfD~k~r~iLR~~~ah~apv~~ 115 (487)
T KOG0310|consen 48 VRVQLYSSVTRSVRKT-F-------SRFKDVVYSVDFRSDGRLLAAG--DESGH--VKVFDMKSRVILRQLYAHQAPVHV 115 (487)
T ss_pred cEEEEEecchhhhhhh-H-------HhhccceeEEEeecCCeEEEcc--CCcCc--EEEeccccHHHHHHHhhccCceeE
Confidence 5566677777554431 1 3445677889999999977654 32233 33444444221 222222222100
Q ss_pred eccCccccCCCCCccCCCcEEEEEccCCccEEEEEeCCCceee-ccccc-CeEEEEEEeEeecCCEEEEEEcCCCCceeE
Q 008873 138 NLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTCLG-PITEG-DWMVEQIVGVNEASGQVYFTGTLDGPLESH 215 (550)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~~~~~~-~lT~~-~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~ 215 (550)
..|.+ ..+.++...+.+.-..+|.. ++.... .|+.. ++ |.. ..|+|..+++++++.-++. ..
T Consensus 116 ---~~f~~-------~d~t~l~s~sDd~v~k~~d~--s~a~v~~~l~~htDY-VR~-g~~~~~~~hivvtGsYDg~--vr 179 (487)
T KOG0310|consen 116 ---TKFSP-------QDNTMLVSGSDDKVVKYWDL--STAYVQAELSGHTDY-VRC-GDISPANDHIVVTGSYDGK--VR 179 (487)
T ss_pred ---EEecc-------cCCeEEEecCCCceEEEEEc--CCcEEEEEecCCcce-eEe-eccccCCCeEEEecCCCce--EE
Confidence 11222 12222222223333344443 344331 23322 33 332 3488898999999987764 67
Q ss_pred EEEEEeCCCCCCCCCCCeeeCCCCceEEEEECCCCCEEEEeecCCCCCCEEEEEEcCCCc
Q 008873 216 LYCAKLYPDWNHTLEAPVKLTNGKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGS 275 (550)
Q Consensus 216 l~~v~~~~~g~~~~~~~~~lt~~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~ 275 (550)
+|-... -+. ....+..+.-..++.+-|.|..|+ ++++ +++-+.|+.+|.
T Consensus 180 l~DtR~--~~~----~v~elnhg~pVe~vl~lpsgs~ia-sAgG----n~vkVWDl~~G~ 228 (487)
T KOG0310|consen 180 LWDTRS--LTS----RVVELNHGCPVESVLALPSGSLIA-SAGG----NSVKVWDLTTGG 228 (487)
T ss_pred EEEecc--CCc----eeEEecCCCceeeEEEcCCCCEEE-EcCC----CeEEEEEecCCc
Confidence 775544 222 445555555567776778877654 4333 478888887565
No 399
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=84.54 E-value=11 Score=39.06 Aligned_cols=49 Identities=8% Similarity=0.044 Sum_probs=31.4
Q ss_pred EEEEEEECCCCceEE-EEcccCCCCCCCCCceeEEEEECCCCeEEEEEEecCCCceEEEEE
Q 008873 59 VRLGVVSAAGGPVSW-MDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKF 118 (550)
Q Consensus 59 ~~l~~~d~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~ 118 (550)
+.|++|+..+-+..+ | ..-.-.++.+.|||||++|+.++ |+. ...||..
T Consensus 552 AvI~lw~t~~W~~~~~L---------~~HsLTVT~l~FSpdg~~LLsvs-RDR-t~sl~~~ 601 (764)
T KOG1063|consen 552 AVIRLWNTANWLQVQEL---------EGHSLTVTRLAFSPDGRYLLSVS-RDR-TVSLYEV 601 (764)
T ss_pred eEEEEEeccchhhhhee---------cccceEEEEEEECCCCcEEEEee-cCc-eEEeeee
Confidence 568889988754333 3 12244678899999999887764 332 2245555
No 400
>PRK13613 lipoprotein LpqB; Provisional
Probab=83.66 E-value=64 Score=34.21 Aligned_cols=167 Identities=14% Similarity=0.014 Sum_probs=88.6
Q ss_pred eeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCce-----EEEEEeecCceeeccCccccCCCCCccCCCcEEEEEcc
Q 008873 89 YLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQR-----KVILVEELDSWVNLHDCFTPLDKGVTKYSGGFIWASEK 163 (550)
Q Consensus 89 ~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~-----~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 163 (550)
...+++-|+||..++++... ...|++=++.++.. +.+... . .+.. ++|+.++.+|..++
T Consensus 364 ~~~s~avS~~g~~~A~v~~~---~~~l~vg~~~~~~~~~~~~~~~~~~--~-------~Lt~----PS~d~~g~vWtvd~ 427 (599)
T PRK13613 364 PLRRVAVSRDESRAAGISAD---GDSVYVGSLTPGASIGVHSWGVTAD--G-------RLTS----PSWDGRGDLWVVDR 427 (599)
T ss_pred CccceEEcCCCceEEEEcCC---CcEEEEeccCCCCccccccceeecc--C-------cccC----CcCcCCCCEEEecC
Confidence 56788999999988888532 23566655543332 222221 1 1111 15777778887766
Q ss_pred C--CccEEEEEeCCCceeeccccc---CeEEEEEEeEeecCCEEEEEEcCCCCceeEEEEEEeCCCCCCCCCCCeeeCCC
Q 008873 164 T--GFRHLYLHDINGTCLGPITEG---DWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTNG 238 (550)
Q Consensus 164 ~--g~~~l~~~~~~~~~~~~lT~~---~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~~v~~~~~g~~~~~~~~~lt~~ 238 (550)
+ +..-|.++.. +++...+... ...+..+. .|+||-++++.....+.....|..|--..+|......++.+...
T Consensus 428 ~~~~~~vl~v~~~-~G~~~~V~~~~l~g~~I~~lr-vSrDG~RvAvv~~~~g~~~v~va~V~R~~~G~~~l~~~~~l~~~ 505 (599)
T PRK13613 428 DPADPRLLWLLQG-DGEPVEVRTPELDGHRVVAVR-VARDGVRVALIVEKDGRRSLQIGRIVRDAKAVVSVEEFRSLAPE 505 (599)
T ss_pred CCCCceEEEEEcC-CCcEEEeeccccCCCEeEEEE-ECCCccEEEEEEecCCCcEEEEEEEEeCCCCcEEeeccEEeccC
Confidence 2 2323555543 3343333331 11455554 89999999998876554344455554422332122234444332
Q ss_pred C-ceEEEEECCCCCEEEEeecCCCCCCEEEEEEcCCCc
Q 008873 239 K-GKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGS 275 (550)
Q Consensus 239 ~-~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~ 275 (550)
- ...+.+|..++..++...+.. .-..++++++ +|.
T Consensus 506 l~~v~~~~W~~~~sL~Vlg~~~~-~~~~v~~v~v-dG~ 541 (599)
T PRK13613 506 LEDVTDMSWAGDSQLVVLGREEG-GVQQARYVQV-DGS 541 (599)
T ss_pred CCccceeEEcCCCEEEEEeccCC-CCcceEEEec-CCc
Confidence 1 245667888876544443333 2234777777 454
No 401
>PLN02310 triacylglycerol lipase
Probab=83.54 E-value=1.4 Score=43.30 Aligned_cols=37 Identities=16% Similarity=0.182 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHcCC-C-CCCceEEEEechhHHHHHHHHh
Q 008873 395 DQLTGAEWLIKQGL-A-KVGHIGLYGWSYGGYLSAITLA 431 (550)
Q Consensus 395 D~~~~~~~l~~~~~-~-d~~~i~i~G~S~GG~~a~~~~~ 431 (550)
.+...++.|.+... - ..-+|.|.|||+||.+|+.++.
T Consensus 190 qVl~eV~~L~~~y~~~~e~~sI~vTGHSLGGALAtLaA~ 228 (405)
T PLN02310 190 QVMQEVKRLVNFYRGKGEEVSLTVTGHSLGGALALLNAY 228 (405)
T ss_pred HHHHHHHHHHHhhcccCCcceEEEEcccHHHHHHHHHHH
Confidence 34555555554311 1 1247999999999999988775
No 402
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=83.47 E-value=38 Score=31.38 Aligned_cols=97 Identities=13% Similarity=0.088 Sum_probs=54.3
Q ss_pred EEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCceeeccCccccCCCCCccCCCcEEEEEccCCccEEEEE
Q 008873 93 VNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLH 172 (550)
Q Consensus 93 ~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~ 172 (550)
++-+|||.+.+..+. ...|=.+|..+|+.++.--..+. .|++. ...+|+-.|+.|. |. .|-++
T Consensus 67 vapapdG~VWft~qg----~gaiGhLdP~tGev~~ypLg~Ga-----~Phgi------v~gpdg~~Witd~-~~-aI~R~ 129 (353)
T COG4257 67 VAPAPDGAVWFTAQG----TGAIGHLDPATGEVETYPLGSGA-----SPHGI------VVGPDGSAWITDT-GL-AIGRL 129 (353)
T ss_pred cccCCCCceEEecCc----cccceecCCCCCceEEEecCCCC-----CCceE------EECCCCCeeEecC-cc-eeEEe
Confidence 466889976554321 22477889999998765322111 11111 1235555666654 33 67788
Q ss_pred eCCCceeec--ccc--cCeEEEEEEeEeecCCEEEEEEcC
Q 008873 173 DINGTCLGP--ITE--GDWMVEQIVGVNEASGQVYFTGTL 208 (550)
Q Consensus 173 ~~~~~~~~~--lT~--~~~~~~~~~~~s~dg~~l~f~~~~ 208 (550)
+.++.+.++ |+. .+-+.... .+++.| .|.|+...
T Consensus 130 dpkt~evt~f~lp~~~a~~nlet~-vfD~~G-~lWFt~q~ 167 (353)
T COG4257 130 DPKTLEVTRFPLPLEHADANLETA-VFDPWG-NLWFTGQI 167 (353)
T ss_pred cCcccceEEeecccccCCCcccce-eeCCCc-cEEEeecc
Confidence 877766553 332 22223333 377776 68999774
No 403
>PRK02888 nitrous-oxide reductase; Validated
Probab=83.40 E-value=43 Score=35.22 Aligned_cols=38 Identities=11% Similarity=0.127 Sum_probs=25.2
Q ss_pred eCCCCceEEEEECCCCCEEEEeecCCCCCCEEEEEEcCCCc
Q 008873 235 LTNGKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGS 275 (550)
Q Consensus 235 lt~~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~ 275 (550)
++.+..-+.+.+||||++++.... ..+.+-++|+++.+
T Consensus 317 IPVGKsPHGV~vSPDGkylyVank---lS~tVSVIDv~k~k 354 (635)
T PRK02888 317 VPVPKNPHGVNTSPDGKYFIANGK---LSPTVTVIDVRKLD 354 (635)
T ss_pred EECCCCccceEECCCCCEEEEeCC---CCCcEEEEEChhhh
Confidence 344444677889999998865532 23578888876543
No 404
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=83.14 E-value=20 Score=34.23 Aligned_cols=150 Identities=9% Similarity=0.061 Sum_probs=74.7
Q ss_pred eeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceE--EEEEeecCceeeccCccccCCCCCccCCCcEEEEEccCCc
Q 008873 89 YLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRK--VILVEELDSWVNLHDCFTPLDKGVTKYSGGFIWASEKTGF 166 (550)
Q Consensus 89 ~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~ 166 (550)
.+..+.++|-...|+-+.... .-|+++|+.++.+. .+.....+. -+|.|..|.|++-. .-
T Consensus 189 ti~svkfNpvETsILas~~sD---rsIvLyD~R~~~Pl~KVi~~mRTN~--------------IswnPeafnF~~a~-ED 250 (433)
T KOG0268|consen 189 SISSVKFNPVETSILASCASD---RSIVLYDLRQASPLKKVILTMRTNT--------------ICWNPEAFNFVAAN-ED 250 (433)
T ss_pred ceeEEecCCCcchheeeeccC---CceEEEecccCCccceeeeeccccc--------------eecCccccceeecc-cc
Confidence 456678888777443332111 12889999888752 222222221 14567567666532 34
Q ss_pred cEEEEEeCCCceeecccccCeEEEE--EEeEeecCCEEEEEEcCCCCceeEEEEEEeCCCCCCCCCCCeeeCCC---Cce
Q 008873 167 RHLYLHDINGTCLGPITEGDWMVEQ--IVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTNG---KGK 241 (550)
Q Consensus 167 ~~l~~~~~~~~~~~~lT~~~~~~~~--~~~~s~dg~~l~f~~~~~~~~~~~l~~v~~~~~g~~~~~~~~~lt~~---~~~ 241 (550)
..||.+|...- .++|-...-+++. -..+||-|+.++-.+-+.. ..||-++- +. -+.+.-. ...
T Consensus 251 ~nlY~~DmR~l-~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDks---IRIf~~~~---~~-----SRdiYhtkRMq~V 318 (433)
T KOG0268|consen 251 HNLYTYDMRNL-SRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKS---IRIFPVNH---GH-----SRDIYHTKRMQHV 318 (433)
T ss_pred ccceehhhhhh-cccchhhcccceeEEEeccCCCcchhccccccce---EEEeecCC---Cc-----chhhhhHhhhhee
Confidence 67899885331 1222222212221 2248899987764433332 56665542 21 1122111 124
Q ss_pred EEEEECCCCCEEEEeecCCCCCCEEEEEE
Q 008873 242 HVAVLDHNMRNFVDFHDSLDSPPRILLCS 270 (550)
Q Consensus 242 ~~~~~s~dg~~l~~~~s~~~~p~~l~~~~ 270 (550)
..+-||.|.+++ ++.|+-. .-.+|...
T Consensus 319 ~~Vk~S~Dskyi-~SGSdd~-nvRlWka~ 345 (433)
T KOG0268|consen 319 FCVKYSMDSKYI-ISGSDDG-NVRLWKAK 345 (433)
T ss_pred eEEEEeccccEE-EecCCCc-ceeeeecc
Confidence 455789998765 4444422 22455533
No 405
>PLN03037 lipase class 3 family protein; Provisional
Probab=82.99 E-value=1.5 Score=44.35 Aligned_cols=37 Identities=16% Similarity=0.179 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHcCC-C-CCCceEEEEechhHHHHHHHHh
Q 008873 395 DQLTGAEWLIKQGL-A-KVGHIGLYGWSYGGYLSAITLA 431 (550)
Q Consensus 395 D~~~~~~~l~~~~~-~-d~~~i~i~G~S~GG~~a~~~~~ 431 (550)
.+.+.+..|.+... . ..-+|.|.|||+||.+|+.+|.
T Consensus 299 QVl~eV~rLv~~Yk~~ge~~SItVTGHSLGGALAtLaA~ 337 (525)
T PLN03037 299 QVMEEVKRLVNFFKDRGEEVSLTITGHSLGGALALLNAY 337 (525)
T ss_pred HHHHHHHHHHHhccccCCcceEEEeccCHHHHHHHHHHH
Confidence 34455555554311 1 1247999999999999988875
No 406
>PLN02719 triacylglycerol lipase
Probab=82.62 E-value=2 Score=43.32 Aligned_cols=38 Identities=26% Similarity=0.283 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHcCCC---CCCceEEEEechhHHHHHHHHh
Q 008873 394 EDQLTGAEWLIKQGLA---KVGHIGLYGWSYGGYLSAITLA 431 (550)
Q Consensus 394 ~D~~~~~~~l~~~~~~---d~~~i~i~G~S~GG~~a~~~~~ 431 (550)
+++.+.++.|.++..- ..-+|.|.|||+||.+|+.+|.
T Consensus 277 eQVl~eV~rL~~~Ypd~~ge~~sItVTGHSLGGALAtLaA~ 317 (518)
T PLN02719 277 EQVLTEVKRLVERYGDEEGEELSITVTGHSLGGALAVLSAY 317 (518)
T ss_pred HHHHHHHHHHHHHCCcccCCcceEEEecCcHHHHHHHHHHH
Confidence 4566667766664211 1247999999999999998775
No 407
>PF15525 DUF4652: Domain of unknown function (DUF4652)
Probab=82.53 E-value=31 Score=29.79 Aligned_cols=68 Identities=9% Similarity=0.154 Sum_probs=45.7
Q ss_pred eEEEEEEECCCCceEEEEcccCCCCCCCCCceeEEEEECCCCeEEEEEEec-C--CCceEEEEEECCCCceEEEEE
Q 008873 58 KVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNR-S--QTKLKVLKFDIKTGQRKVILV 130 (550)
Q Consensus 58 ~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~wspDg~~i~~~~~r-~--~~~~~l~~~~~~~g~~~~l~~ 130 (550)
-..||+.|+.+++...|.++..+.... +. .+-|-.|..+++..-.. + ....+||.+++.+|+...|+.
T Consensus 87 iGkIYIkn~~~~~~~~L~i~~~~~k~s--PK---~i~WiDD~~L~vIIG~a~GTvS~GGnLy~~nl~tg~~~~ly~ 157 (200)
T PF15525_consen 87 IGKIYIKNLNNNNWWSLQIDQNEEKYS--PK---YIEWIDDNNLAVIIGYAHGTVSKGGNLYKYNLNTGNLTELYE 157 (200)
T ss_pred ceeEEEEecCCCceEEEEecCcccccC--Cc---eeEEecCCcEEEEEccccceEccCCeEEEEEccCCceeEeee
Confidence 367999999999998886652211111 12 35788887765544211 1 123479999999999999987
No 408
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=82.12 E-value=9.7 Score=39.46 Aligned_cols=18 Identities=22% Similarity=0.298 Sum_probs=15.0
Q ss_pred ceEEEcCCCCeEEEEEEe
Q 008873 5 TGYWWSLDSKFIAFTQVD 22 (550)
Q Consensus 5 ~~~~wSPdg~~lay~~~~ 22 (550)
..+.|||||++|+=++.|
T Consensus 576 T~l~FSpdg~~LLsvsRD 593 (764)
T KOG1063|consen 576 TRLAFSPDGRYLLSVSRD 593 (764)
T ss_pred EEEEECCCCcEEEEeecC
Confidence 457899999999888765
No 409
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=82.09 E-value=44 Score=31.14 Aligned_cols=232 Identities=15% Similarity=0.133 Sum_probs=112.7
Q ss_pred ccceEEEcCCCCeEEEEEEeCCCCCeEEEeecCCCCCCCCCcccccCCC------CCCCCCeEEEEEEECCCCceE---E
Q 008873 3 RKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPF------AGASNVKVRLGVVSAAGGPVS---W 73 (550)
Q Consensus 3 ~~~~~~wSPdg~~lay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~------~g~~~~~~~l~~~d~~~~~~~---~ 73 (550)
+.+-+.=|-||+.|++=.....|+..++++-. =+-.-.|.- -|.-+-.-. ||++.+.+.. +
T Consensus 67 sr~ivSaSqDGklIvWDs~TtnK~haipl~s~--------WVMtCA~sPSg~~VAcGGLdN~Cs--iy~ls~~d~~g~~~ 136 (343)
T KOG0286|consen 67 SRRIVSASQDGKLIVWDSFTTNKVHAIPLPSS--------WVMTCAYSPSGNFVACGGLDNKCS--IYPLSTRDAEGNVR 136 (343)
T ss_pred cCeEEeeccCCeEEEEEcccccceeEEecCce--------eEEEEEECCCCCeEEecCcCceeE--EEecccccccccce
Confidence 44556668899999987766666555443210 000011111 122222233 4555543111 1
Q ss_pred EEcccCCCCCCCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEe-ecCceeeccCccccCCCCCcc
Q 008873 74 MDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVE-ELDSWVNLHDCFTPLDKGVTK 152 (550)
Q Consensus 74 l~~~~~~~~~~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~ 152 (550)
+.- .+..-..|++.-.+.+|+.+| ..+.. ....+-|+++|+..+.+.. .++... . .+.| +
T Consensus 137 v~r-----~l~gHtgylScC~f~dD~~il-T~SGD----~TCalWDie~g~~~~~f~GH~gDV~s-l--sl~p-----~- 197 (343)
T KOG0286|consen 137 VSR-----ELAGHTGYLSCCRFLDDNHIL-TGSGD----MTCALWDIETGQQTQVFHGHTGDVMS-L--SLSP-----S- 197 (343)
T ss_pred eee-----eecCccceeEEEEEcCCCceE-ecCCC----ceEEEEEcccceEEEEecCCcccEEE-E--ecCC-----C-
Confidence 110 123445788888999987655 33222 2245557788876554432 121110 0 0111 0
Q ss_pred CCCcEEEEEccCCccEEEEEeCCCce-eecccccCeEEEEEEeEeecCCEEEEEEcCCCCceeEEEEEEeCCCCCCCCCC
Q 008873 153 YSGGFIWASEKTGFRHLYLHDINGTC-LGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEA 231 (550)
Q Consensus 153 ~~~~~~~~s~~~g~~~l~~~~~~~~~-~~~lT~~~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~~v~~~~~g~~~~~~ 231 (550)
+++ .|+|-. --..-++.|...+. .+-...++-++..+. +-|+|..+. ++.+++ ...+|-+.. +. +
T Consensus 198 ~~n--tFvSg~-cD~~aklWD~R~~~c~qtF~ghesDINsv~-ffP~G~afa-tGSDD~--tcRlyDlRa--D~-----~ 263 (343)
T KOG0286|consen 198 DGN--TFVSGG-CDKSAKLWDVRSGQCVQTFEGHESDINSVR-FFPSGDAFA-TGSDDA--TCRLYDLRA--DQ-----E 263 (343)
T ss_pred CCC--eEEecc-cccceeeeeccCcceeEeecccccccceEE-EccCCCeee-ecCCCc--eeEEEeecC--Cc-----E
Confidence 122 333311 01223444543333 333444455565554 788985443 444444 367774443 32 2
Q ss_pred CeeeCCC---CceEEEEECCCCCEEEEeecCCCCCCEEEEEEcCCCceeEecc
Q 008873 232 PVKLTNG---KGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLY 281 (550)
Q Consensus 232 ~~~lt~~---~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~~~~~l~ 281 (550)
....... .|..++.||..|+.|..-+.+ -...+.|...++..-.|.
T Consensus 264 ~a~ys~~~~~~gitSv~FS~SGRlLfagy~d----~~c~vWDtlk~e~vg~L~ 312 (343)
T KOG0286|consen 264 LAVYSHDSIICGITSVAFSKSGRLLFAGYDD----FTCNVWDTLKGERVGVLA 312 (343)
T ss_pred EeeeccCcccCCceeEEEcccccEEEeeecC----CceeEeeccccceEEEee
Confidence 2232222 357888999999876544443 356667766666544444
No 410
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=81.98 E-value=66 Score=33.17 Aligned_cols=50 Identities=18% Similarity=0.159 Sum_probs=30.4
Q ss_pred EEEEEECCCCce-EEEEcccCCCCCCCCCceeEEEEECCCCeE-EEEEEecCCCceEEEEEECCCC
Q 008873 60 RLGVVSAAGGPV-SWMDLQCGGTDQNYDEEYLARVNWMHGNIL-TAQVLNRSQTKLKVLKFDIKTG 123 (550)
Q Consensus 60 ~l~~~d~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~wspDg~~-i~~~~~r~~~~~~l~~~~~~~g 123 (550)
.|.+|.+.||.- +.+.+ +.-+..++|+|.++. ++.++... .+++++..-|
T Consensus 423 tvriWEi~TgRcvr~~~~----------d~~I~~vaw~P~~~~~vLAvA~~~----~~~ivnp~~G 474 (733)
T KOG0650|consen 423 TVRIWEIATGRCVRTVQF----------DSEIRSVAWNPLSDLCVLAVAVGE----CVLIVNPIFG 474 (733)
T ss_pred cEEEEEeecceEEEEEee----------cceeEEEEecCCCCceeEEEEecC----ceEEeCcccc
Confidence 356678888754 33333 457888999999983 33332221 1666666655
No 411
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=81.13 E-value=10 Score=35.16 Aligned_cols=44 Identities=11% Similarity=0.134 Sum_probs=30.8
Q ss_pred CceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecC
Q 008873 87 EEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELD 134 (550)
Q Consensus 87 ~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~ 134 (550)
+..+..++||.||..++...-.. ++-+.|+.+|+..++-.+..+
T Consensus 72 ~~PvL~v~WsddgskVf~g~~Dk----~~k~wDL~S~Q~~~v~~Hd~p 115 (347)
T KOG0647|consen 72 DGPVLDVCWSDDGSKVFSGGCDK----QAKLWDLASGQVSQVAAHDAP 115 (347)
T ss_pred CCCeEEEEEccCCceEEeeccCC----ceEEEEccCCCeeeeeecccc
Confidence 44567789999997665554333 366678899988887766544
No 412
>KOG2541 consensus Palmitoyl protein thioesterase [Lipid transport and metabolism; Posttranslational modification, protein turnover, chaperones]
Probab=81.09 E-value=19 Score=33.09 Aligned_cols=88 Identities=17% Similarity=0.038 Sum_probs=48.4
Q ss_pred ceEEEEEcCCCCceeecccccccchhHhHHHHh-CCcEEEEECCCCCCCCchhhHHHHhhccCCCchHHHHHHHHHHHHc
Q 008873 328 YKTLISVYGGPCVQLVCDSWINTVDMRAQYLRS-KGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQ 406 (550)
Q Consensus 328 ~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~-~G~~vv~~d~rG~g~~~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~ 406 (550)
.|+|| +||-...-. ...+..+.+++.+ -|..|.+.+. |.| -...+. .. +.++...+....++
T Consensus 24 ~P~ii-~HGigd~c~-----~~~~~~~~q~l~~~~g~~v~~lei-g~g-~~~s~l---~p------l~~Qv~~~ce~v~~ 86 (296)
T KOG2541|consen 24 VPVIV-WHGIGDSCS-----SLSMANLTQLLEELPGSPVYCLEI-GDG-IKDSSL---MP------LWEQVDVACEKVKQ 86 (296)
T ss_pred CCEEE-EeccCcccc-----cchHHHHHHHHHhCCCCeeEEEEe-cCC-cchhhh---cc------HHHHHHHHHHHHhc
Confidence 57766 699432211 0123345666665 4888888886 333 111111 11 34444444433333
Q ss_pred CCCCCCceEEEEechhHHHHHHHHhh
Q 008873 407 GLAKVGHIGLYGWSYGGYLSAITLAR 432 (550)
Q Consensus 407 ~~~d~~~i~i~G~S~GG~~a~~~~~~ 432 (550)
...-++-+.++|.|.||.++-.++..
T Consensus 87 m~~lsqGynivg~SQGglv~Raliq~ 112 (296)
T KOG2541|consen 87 MPELSQGYNIVGYSQGGLVARALIQF 112 (296)
T ss_pred chhccCceEEEEEccccHHHHHHHHh
Confidence 21224568899999999999777654
No 413
>PRK13613 lipoprotein LpqB; Provisional
Probab=81.00 E-value=80 Score=33.50 Aligned_cols=121 Identities=17% Similarity=0.122 Sum_probs=60.2
Q ss_pred eeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCceeeccCccccCCCCCccCCCc--EEEEEccCCc
Q 008873 89 YLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYSGG--FIWASEKTGF 166 (550)
Q Consensus 89 ~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~s~~~g~ 166 (550)
.+..|+|.++|- +..+ ++.....++.++--.+|+...+.. .|+...+ +.-+ ..+.|+ ++++.+.+|-
T Consensus 410 ~Lt~PS~d~~g~-vWtv-d~~~~~~~vl~v~~~~G~~~~V~~----~~l~g~~-I~~l----rvSrDG~RvAvv~~~~g~ 478 (599)
T PRK13613 410 RLTSPSWDGRGD-LWVV-DRDPADPRLLWLLQGDGEPVEVRT----PELDGHR-VVAV----RVARDGVRVALIVEKDGR 478 (599)
T ss_pred cccCCcCcCCCC-EEEe-cCCCCCceEEEEEcCCCcEEEeec----cccCCCE-eEEE----EECCCccEEEEEEecCCC
Confidence 467789999984 2222 443333333333334666654332 2443211 1111 224444 7777776665
Q ss_pred cEEEEEe--CC-Cceeecccc------cCeEEEEEEeEeecCCEEEEEEcCCCCceeEEEEEEeCCCCC
Q 008873 167 RHLYLHD--IN-GTCLGPITE------GDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWN 226 (550)
Q Consensus 167 ~~l~~~~--~~-~~~~~~lT~------~~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~~v~~~~~g~ 226 (550)
.+|++-- .+ .++ +.|+. +--.+.+. .|..++ .|+..+...+ ....++.+++ +|.
T Consensus 479 ~~v~va~V~R~~~G~-~~l~~~~~l~~~l~~v~~~-~W~~~~-sL~Vlg~~~~-~~~~v~~v~v--dG~ 541 (599)
T PRK13613 479 RSLQIGRIVRDAKAV-VSVEEFRSLAPELEDVTDM-SWAGDS-QLVVLGREEG-GVQQARYVQV--DGS 541 (599)
T ss_pred cEEEEEEEEeCCCCc-EEeeccEEeccCCCcccee-EEcCCC-EEEEEeccCC-CCcceEEEec--CCc
Confidence 5665532 22 222 34443 22233444 487665 5666554322 3578999998 665
No 414
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=80.93 E-value=49 Score=30.99 Aligned_cols=115 Identities=11% Similarity=0.200 Sum_probs=63.4
Q ss_pred eeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCceeeccCccccCCCCCccCCCc-EEEEEccCCcc
Q 008873 89 YLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYSGG-FIWASEKTGFR 167 (550)
Q Consensus 89 ~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~g~~ 167 (550)
.+++.+|+||.+.++.+.+.. .+|..++.+|.-.+++.-. +..+... + .+.+++ |+...+|...-
T Consensus 87 nvS~LTynp~~rtLFav~n~p---~~iVElt~~GdlirtiPL~---g~~DpE~-I-------eyig~n~fvi~dER~~~l 152 (316)
T COG3204 87 NVSSLTYNPDTRTLFAVTNKP---AAIVELTKEGDLIRTIPLT---GFSDPET-I-------EYIGGNQFVIVDERDRAL 152 (316)
T ss_pred cccceeeCCCcceEEEecCCC---ceEEEEecCCceEEEeccc---ccCChhH-e-------EEecCCEEEEEehhcceE
Confidence 478899999999887776554 3588888876555544321 1100000 0 112333 55555555543
Q ss_pred EEEEEeCCCceee----ccccc-----CeEEEEEEeEeecCCEEEEEEcCCCCceeEEEEEEe
Q 008873 168 HLYLHDINGTCLG----PITEG-----DWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKL 221 (550)
Q Consensus 168 ~l~~~~~~~~~~~----~lT~~-----~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~~v~~ 221 (550)
.++.++.++.... .++-+ +--..+.+ |++....|+|.-.++ | ..||.+..
T Consensus 153 ~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA-~d~~~~~l~~aKEr~-P--~~I~~~~~ 211 (316)
T COG3204 153 YLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLA-WDPVDHRLFVAKERN-P--IGIFEVTQ 211 (316)
T ss_pred EEEEEcCCccEEeccceEEeccccCCCCcCceeee-cCCCCceEEEEEccC-C--cEEEEEec
Confidence 4445555543211 22222 22234554 999988888775544 4 67888775
No 415
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=80.68 E-value=66 Score=32.32 Aligned_cols=191 Identities=9% Similarity=0.075 Sum_probs=89.3
Q ss_pred cCCCCCCCCCeEEEEEEECCCCceEEEEcccCCCCCCCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEE
Q 008873 48 AYPFAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKV 127 (550)
Q Consensus 48 ~y~~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~ 127 (550)
.|-..|+.+..+ -+||+..+-..+. +.+..-.+..+.+.-...+|+.++..+ +|.+..++++....
T Consensus 92 ~y~~sgG~~~~V--kiwdl~~kl~hr~--------lkdh~stvt~v~YN~~DeyiAsvs~gG----diiih~~~t~~~tt 157 (673)
T KOG4378|consen 92 LYEISGGQSGCV--KIWDLRAKLIHRF--------LKDHQSTVTYVDYNNTDEYIASVSDGG----DIIIHGTKTKQKTT 157 (673)
T ss_pred eeeeccCcCcee--eehhhHHHHHhhh--------ccCCcceeEEEEecCCcceeEEeccCC----cEEEEecccCcccc
Confidence 455555555443 3467774433221 112223345555655556666554332 46677777665332
Q ss_pred EEEeecCceeeccCccccCCCCCccCCCcEEEEEccCCccEEEEEeCCCceeecccccCeEEEEEEeEeecCCEEEEEEc
Q 008873 128 ILVEELDSWVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGT 207 (550)
Q Consensus 128 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~~~~~~~lT~~~~~~~~~~~~s~dg~~l~f~~~ 207 (550)
-+......-.-. -.|++ +..-++.....+|.-+||=+.--......+..+.-...++ +++|....|+.+.-
T Consensus 158 ~f~~~sgqsvRl-l~ys~-------skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gi-cfspsne~l~vsVG 228 (673)
T KOG4378|consen 158 TFTIDSGQSVRL-LRYSP-------SKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGI-CFSPSNEALLVSVG 228 (673)
T ss_pred ceecCCCCeEEE-eeccc-------ccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcc-eecCCccceEEEec
Confidence 222211100000 01212 1222333333356556665432111111222222223344 48888766665544
Q ss_pred CCCCceeEEEEEEeCCCCCCCCCCCeeeCCCCceEEEEECCCCCEEEEeecCCCCCCEEEEEEcCCC
Q 008873 208 LDGPLESHLYCAKLYPDWNHTLEAPVKLTNGKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDG 274 (550)
Q Consensus 208 ~~~~~~~~l~~v~~~~~g~~~~~~~~~lt~~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g 274 (550)
-+ ..|+..|. ... +-..+|+-..-...++|+++|.+|+.--+. .+|+.+|+...
T Consensus 229 ~D----kki~~yD~--~s~---~s~~~l~y~~Plstvaf~~~G~~L~aG~s~----G~~i~YD~R~~ 282 (673)
T KOG4378|consen 229 YD----KKINIYDI--RSQ---ASTDRLTYSHPLSTVAFSECGTYLCAGNSK----GELIAYDMRST 282 (673)
T ss_pred cc----ceEEEeec--ccc---cccceeeecCCcceeeecCCceEEEeecCC----ceEEEEecccC
Confidence 32 46666676 211 123455544345667899999777654333 47888887533
No 416
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=80.51 E-value=62 Score=31.85 Aligned_cols=185 Identities=14% Similarity=0.034 Sum_probs=92.3
Q ss_pred EEEEEEECCCCceEEEEcccCCCCCCCCCceeEEEEECCCCeEEEEEEe---cCC----CceEEEEEECCCCceEEEEEe
Q 008873 59 VRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLN---RSQ----TKLKVLKFDIKTGQRKVILVE 131 (550)
Q Consensus 59 ~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~wspDg~~i~~~~~---r~~----~~~~l~~~~~~~g~~~~l~~~ 131 (550)
-.||.||.++.+-+++....+|++.. ....++| |.|.+++|--. -.+ .-.++|++++.+.+..+|-..
T Consensus 98 ndLy~Yn~k~~eWkk~~spn~P~pRs----shq~va~-~s~~l~~fGGEfaSPnq~qF~HYkD~W~fd~~trkweql~~~ 172 (521)
T KOG1230|consen 98 NDLYSYNTKKNEWKKVVSPNAPPPRS----SHQAVAV-PSNILWLFGGEFASPNQEQFHHYKDLWLFDLKTRKWEQLEFG 172 (521)
T ss_pred eeeeEEeccccceeEeccCCCcCCCc----cceeEEe-ccCeEEEeccccCCcchhhhhhhhheeeeeeccchheeeccC
Confidence 46999999998888876654432111 1122333 55554444211 111 234799999999888777542
Q ss_pred ecCceeeccCccccCCCCCccCCCcEEEE--EccCC----ccEEEEEeCCCceeecccc-cCeE--EEE-EEeEeecCCE
Q 008873 132 ELDSWVNLHDCFTPLDKGVTKYSGGFIWA--SEKTG----FRHLYLHDINGTCLGPITE-GDWM--VEQ-IVGVNEASGQ 201 (550)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--s~~~g----~~~l~~~~~~~~~~~~lT~-~~~~--~~~-~~~~s~dg~~ 201 (550)
.++. ...-.....|...-|+|- .|.++ +.+||.+++++=++..|.. |.+. .++ ....+|+|..
T Consensus 173 g~PS-------~RSGHRMvawK~~lilFGGFhd~nr~y~YyNDvy~FdLdtykW~Klepsga~PtpRSGcq~~vtpqg~i 245 (521)
T KOG1230|consen 173 GGPS-------PRSGHRMVAWKRQLILFGGFHDSNRDYIYYNDVYAFDLDTYKWSKLEPSGAGPTPRSGCQFSVTPQGGI 245 (521)
T ss_pred CCCC-------CCccceeEEeeeeEEEEcceecCCCceEEeeeeEEEeccceeeeeccCCCCCCCCCCcceEEecCCCcE
Confidence 2110 000000001111113331 22222 4799999998866655543 3221 111 1236788876
Q ss_pred EEEEEc---------CCCCceeEEEEEEeCCCCCCCCCCCeeeCCC-----C-ceEEEEECCCCCEEEEe
Q 008873 202 VYFTGT---------LDGPLESHLYCAKLYPDWNHTLEAPVKLTNG-----K-GKHVAVLDHNMRNFVDF 256 (550)
Q Consensus 202 l~f~~~---------~~~~~~~~l~~v~~~~~g~~~~~~~~~lt~~-----~-~~~~~~~s~dg~~l~~~ 256 (550)
+++-+- ..+.....+|.++.. +|....-.-.++... + -..++.+.++++.++|-
T Consensus 246 ~vyGGYsK~~~kK~~dKG~~hsDmf~L~p~-~~~~dKw~W~kvkp~g~kPspRsgfsv~va~n~kal~FG 314 (521)
T KOG1230|consen 246 VVYGGYSKQRVKKDVDKGTRHSDMFLLKPE-DGREDKWVWTKVKPSGVKPSPRSGFSVAVAKNHKALFFG 314 (521)
T ss_pred EEEcchhHhhhhhhhhcCceeeeeeeecCC-cCCCcceeEeeccCCCCCCCCCCceeEEEecCCceEEec
Confidence 655542 234445677777763 322111112222211 1 14566778888887763
No 417
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=80.48 E-value=8.1 Score=29.04 Aligned_cols=53 Identities=9% Similarity=0.005 Sum_probs=33.8
Q ss_pred CeEEEEEEECCCCceEEEEcccCCCCCCCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECC
Q 008873 57 VKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIK 121 (550)
Q Consensus 57 ~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~ 121 (550)
+..+|..+|..+++++.+--+ -.+-..++.|||++.++++-.- ..+|.++-++
T Consensus 35 ~~GRll~ydp~t~~~~vl~~~---------L~fpNGVals~d~~~vlv~Et~---~~Ri~rywl~ 87 (89)
T PF03088_consen 35 PTGRLLRYDPSTKETTVLLDG---------LYFPNGVALSPDESFVLVAETG---RYRILRYWLK 87 (89)
T ss_dssp --EEEEEEETTTTEEEEEEEE---------ESSEEEEEE-TTSSEEEEEEGG---GTEEEEEESS
T ss_pred CCcCEEEEECCCCeEEEehhC---------CCccCeEEEcCCCCEEEEEecc---CceEEEEEEe
Confidence 457899999999998876322 2345678999999977665322 2245555544
No 418
>PLN02213 sinapoylglucose-malate O-sinapoyltransferase/ carboxypeptidase
Probab=80.43 E-value=2.6 Score=40.72 Aligned_cols=62 Identities=16% Similarity=0.046 Sum_probs=48.7
Q ss_pred CcEEEEecCCCCCCChHHHHHHHHHHHHc---------------C-----CC-eEEEEcCCCCCcCCCCCcHHHHHHHHH
Q 008873 485 GKLLLVHGMIDENVHFRHTARLINALVAA---------------R-----KP-YEILIFPDERHMPRRHRDRIYMEERIW 543 (550)
Q Consensus 485 ~P~lii~G~~D~~v~~~~~~~~~~~l~~~---------------~-----~~-~~~~~~p~~~H~~~~~~~~~~~~~~~~ 543 (550)
.++||..|..|.+|+....+++.++|.-. | .+ ..++++-++||... ......++.+.
T Consensus 234 i~VliY~Gd~D~icn~~g~~~wi~~L~w~~~~~~~~w~~~~~~~G~vk~y~~~ltf~~V~~AGHmV~--~qP~~al~m~~ 311 (319)
T PLN02213 234 YRSLIYSGDHDIAVPFLATQAWIRSLNYSPIHNWRPWMINNQIAGYTRAYSNKMTFATIKAGGHTAE--YRPNETFIMFQ 311 (319)
T ss_pred ceEEEEECCcCeeCCcHhHHHHHHhcCCCCCCCCccccCCCEeeeEEEEecCcceEEEEcCCCCCCC--cCHHHHHHHHH
Confidence 58999999999999999999999888521 1 12 77777889999883 36777788888
Q ss_pred HHHHH
Q 008873 544 EFIER 548 (550)
Q Consensus 544 ~fl~~ 548 (550)
+|+..
T Consensus 312 ~fi~~ 316 (319)
T PLN02213 312 RWISG 316 (319)
T ss_pred HHHcC
Confidence 88753
No 419
>PF09994 DUF2235: Uncharacterized alpha/beta hydrolase domain (DUF2235); InterPro: IPR018712 This domain has no known function.
Probab=80.10 E-value=9.2 Score=36.08 Aligned_cols=45 Identities=20% Similarity=0.150 Sum_probs=32.9
Q ss_pred ccCCCchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhh
Q 008873 387 NCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLAR 432 (550)
Q Consensus 387 ~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~ 432 (550)
..+......+..+..+|.+.. -..++|.|+|+|-|++.|-.++..
T Consensus 68 a~g~g~~~~I~~ay~~l~~~~-~~gd~I~lfGFSRGA~~AR~~a~~ 112 (277)
T PF09994_consen 68 AFGWGIEARIRDAYRFLSKNY-EPGDRIYLFGFSRGAYTARAFANM 112 (277)
T ss_pred hhhcchHHHHHHHHHHHHhcc-CCcceEEEEecCccHHHHHHHHHH
Confidence 333344567777888887664 356789999999999999777653
No 420
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=79.97 E-value=11 Score=41.34 Aligned_cols=99 Identities=19% Similarity=0.252 Sum_probs=59.8
Q ss_pred CccEEEEEeCCCceeecccccCe----EEEEEEeEeecCCEEEEEEcCCCCceeEEEEEEeCCCCCCCCCCCeeeCCCCc
Q 008873 165 GFRHLYLHDINGTCLGPITEGDW----MVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTNGKG 240 (550)
Q Consensus 165 g~~~l~~~~~~~~~~~~lT~~~~----~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~~v~~~~~g~~~~~~~~~lt~~~~ 240 (550)
+..+|++.|++. -.++.|.+.- ++. ...|.-.-.+|+-++...+ ..-|| |+ ..+ ..+..++...+
T Consensus 137 ~~geI~iWDlnn-~~tP~~~~~~~~~~eI~-~lsWNrkvqhILAS~s~sg--~~~iW--Dl--r~~---~pii~ls~~~~ 205 (1049)
T KOG0307|consen 137 DDGEILIWDLNK-PETPFTPGSQAPPSEIK-CLSWNRKVSHILASGSPSG--RAVIW--DL--RKK---KPIIKLSDTPG 205 (1049)
T ss_pred CCCcEEEeccCC-cCCCCCCCCCCCcccce-EeccchhhhHHhhccCCCC--Cceec--cc--cCC---CcccccccCCC
Confidence 346788888765 2334444311 222 2346655556666655543 24555 44 221 13445554433
Q ss_pred ---eEEEEECCCCCEEEEeecCCCCCCEEEEEEcCCC
Q 008873 241 ---KHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDG 274 (550)
Q Consensus 241 ---~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g 274 (550)
+..+.|-||...-+.+.+..++.|.|-+.|++..
T Consensus 206 ~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~a 242 (1049)
T KOG0307|consen 206 RMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFA 242 (1049)
T ss_pred ccceeeeeeCCCCceeeeeecCCCCCceeEeeccccc
Confidence 5667899999888889998888889988886543
No 421
>KOG1283 consensus Serine carboxypeptidases [Posttranslational modification, protein turnover, chaperones]
Probab=78.99 E-value=5.9 Score=37.20 Aligned_cols=133 Identities=16% Similarity=0.092 Sum_probs=75.5
Q ss_pred CCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchh-----------HhHHHHhCCcEEEEECCC-CC
Q 008873 306 NDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDM-----------RAQYLRSKGILVWKLDNR-GT 373 (550)
Q Consensus 306 ~~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~-----------~~~~l~~~G~~vv~~d~r-G~ 373 (550)
.++....+|+|....... ...|+.+++.|||++... .|+ ++.. ...+|.. ..++.+|-+ |.
T Consensus 11 r~~a~~F~wly~~~~~~k--s~~pl~lwlqGgpGaSst--G~G-NFeE~GPl~~~~~~r~~TWlk~--adllfvDnPVGa 83 (414)
T KOG1283|consen 11 RTGAHMFWWLYYATANVK--SERPLALWLQGGPGASST--GFG-NFEELGPLDLDGSPRDWTWLKD--ADLLFVDNPVGA 83 (414)
T ss_pred ecCceEEEEEeeeccccc--cCCCeeEEecCCCCCCCc--Ccc-chhhcCCcccCCCcCCchhhhh--ccEEEecCCCcC
Confidence 356778888887654321 346999999999987542 121 1110 0122322 456677765 55
Q ss_pred CCCchhhHHHHhhccCCCchHHHHHHHHHHHH-cCCCCCCceEEEEechhHHHHHHHHhh------CC---CeeEEEEEc
Q 008873 374 ARRGLKFEASIKHNCGRIDAEDQLTGAEWLIK-QGLAKVGHIGLYGWSYGGYLSAITLAR------FP---DVFQCAVSG 443 (550)
Q Consensus 374 g~~~~~~~~~~~~~~~~~~~~D~~~~~~~l~~-~~~~d~~~i~i~G~S~GG~~a~~~~~~------~~---~~~~~~v~~ 443 (550)
|.+=-+-. ..+..--.....|+.+.++.+.. ++.....++.|+-.||||-++...+.. .. ..|.++++.
T Consensus 84 GfSyVdg~-~~Y~~~~~qia~Dl~~llk~f~~~h~e~~t~P~~If~ESYGGKma~k~al~l~~aIk~G~i~~nf~~VaLG 162 (414)
T KOG1283|consen 84 GFSYVDGS-SAYTTNNKQIALDLVELLKGFFTNHPEFKTVPLYIFCESYGGKMAAKFALELDDAIKRGEIKLNFIGVALG 162 (414)
T ss_pred ceeeecCc-ccccccHHHHHHHHHHHHHHHHhcCccccccceEEEEhhcccchhhhhhhhHHHHHhcCceeecceeEEcc
Confidence 43311100 00000001125677777765544 466777899999999999999877643 22 136667766
Q ss_pred CCc
Q 008873 444 APV 446 (550)
Q Consensus 444 ~~~ 446 (550)
.+.
T Consensus 163 DSW 165 (414)
T KOG1283|consen 163 DSW 165 (414)
T ss_pred Ccc
Confidence 553
No 422
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=78.54 E-value=74 Score=31.65 Aligned_cols=138 Identities=12% Similarity=0.034 Sum_probs=72.7
Q ss_pred EEEEEECCCCceEEEEcccCCCCCCCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCceeec
Q 008873 60 RLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNL 139 (550)
Q Consensus 60 ~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~ 139 (550)
.+.++|-++++.... ..- . ... ..+..+|||+.++... .....|..++..+.+..+ ...... ...
T Consensus 141 ~vsvid~~t~~~~~~-~~v------G-~~P-~~~a~~p~g~~vyv~~---~~~~~v~vi~~~~~~v~~-~~~~~~--~~~ 205 (381)
T COG3391 141 TVSVIDAATNKVTAT-IPV------G-NTP-TGVAVDPDGNKVYVTN---SDDNTVSVIDTSGNSVVR-GSVGSL--VGV 205 (381)
T ss_pred eEEEEeCCCCeEEEE-Eec------C-CCc-ceEEECCCCCeEEEEe---cCCCeEEEEeCCCcceec-cccccc--ccc
Confidence 457788888776543 211 1 111 5578999999766554 223458888877665443 111000 000
Q ss_pred cCccccCCCCCccCCCc-EEEEEccC-CccEEEEEeCCCceeec--ccccCeEEEEEEeEeecCCEEEEEEcCCCCceeE
Q 008873 140 HDCFTPLDKGVTKYSGG-FIWASEKT-GFRHLYLHDINGTCLGP--ITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESH 215 (550)
Q Consensus 140 ~~~~~~~~~~~~~~~~~-~~~~s~~~-g~~~l~~~~~~~~~~~~--lT~~~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~ 215 (550)
.. .+.....++++ .+++.+.. ....+..++..++.... ++.+...... ...+|+|+.+|...... ..
T Consensus 206 ~~----~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~-v~~~p~g~~~yv~~~~~----~~ 276 (381)
T COG3391 206 GT----GPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSGAPRG-VAVDPAGKAAYVANSQG----GT 276 (381)
T ss_pred CC----CCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccCCCCc-eeECCCCCEEEEEecCC----Ce
Confidence 00 00111234444 55555542 23578888877655433 2333321112 24789999988876552 35
Q ss_pred EEEEEe
Q 008873 216 LYCAKL 221 (550)
Q Consensus 216 l~~v~~ 221 (550)
++.++.
T Consensus 277 V~vid~ 282 (381)
T COG3391 277 VSVIDG 282 (381)
T ss_pred EEEEeC
Confidence 666665
No 423
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=78.22 E-value=37 Score=34.46 Aligned_cols=38 Identities=18% Similarity=0.212 Sum_probs=22.6
Q ss_pred EEEEEECCCCce-EEEEcccCCCCCCCCCceeEEEEECCCCeEEEEEEec
Q 008873 60 RLGVVSAAGGPV-SWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNR 108 (550)
Q Consensus 60 ~l~~~d~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~wspDg~~i~~~~~r 108 (550)
.|.+||.++++. +++++. .+..+.||+||..+++..+.
T Consensus 127 ~i~~yDw~~~~~i~~i~v~-----------~vk~V~Ws~~g~~val~t~~ 165 (443)
T PF04053_consen 127 FICFYDWETGKLIRRIDVS-----------AVKYVIWSDDGELVALVTKD 165 (443)
T ss_dssp EEEEE-TTT--EEEEESS------------E-EEEEE-TTSSEEEEE-S-
T ss_pred CEEEEEhhHcceeeEEecC-----------CCcEEEEECCCCEEEEEeCC
Confidence 488899998765 455331 25678999999988887533
No 424
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=78.13 E-value=98 Score=32.80 Aligned_cols=240 Identities=10% Similarity=-0.090 Sum_probs=0.0
Q ss_pred ceEEEcCCCCeEEEEEEeCCCCCeEEEeecCCCCCCCCCcccccCCCCCCCCCeEEEEEEECCCCceEEEEcccCCCCCC
Q 008873 5 TGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQN 84 (550)
Q Consensus 5 ~~~~wSPdg~~lay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~ 84 (550)
.++.+++|+..+.++..| --+.+||+..-+..+. .
T Consensus 196 tsL~~~~d~~~~ls~~RD------------------------------------kvi~vwd~~~~~~l~~---------l 230 (775)
T KOG0319|consen 196 TSLAFSEDSLELLSVGRD------------------------------------KVIIVWDLVQYKKLKT---------L 230 (775)
T ss_pred eeeeeccCCceEEEeccC------------------------------------cEEEEeehhhhhhhhe---------e
Q ss_pred CCCceeEEEEECCC-----CeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCceeeccCccccCCCCCccCCCcEEE
Q 008873 85 YDEEYLARVNWMHG-----NILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYSGGFIW 159 (550)
Q Consensus 85 ~~~~~~~~~~wspD-----g~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (550)
+-...+-++...++ |.+++..-.+.. +-..+.+++++........ .+.-....... +..+++.
T Consensus 231 p~ye~~E~vv~l~~~~~~~~~~~~TaG~~g~----~~~~d~es~~~~~~~~~~~---~~e~~~~~~~~-----~~~~~l~ 298 (775)
T KOG0319|consen 231 PLYESLESVVRLREELGGKGEYIITAGGSGV----VQYWDSESGKCVYKQRQSD---SEEIDHLLAIE-----SMSQLLL 298 (775)
T ss_pred chhhheeeEEEechhcCCcceEEEEecCCce----EEEEecccchhhhhhccCC---chhhhcceecc-----ccCceEE
Q ss_pred EEccCCccEEEEEeCCCceee-cccccCeEEEEEEeEeecCCEEEEEEcCCCCceeEEEEEEeCCCCCCCCCCCeeeCCC
Q 008873 160 ASEKTGFRHLYLHDINGTCLG-PITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTNG 238 (550)
Q Consensus 160 ~s~~~g~~~l~~~~~~~~~~~-~lT~~~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~~v~~~~~g~~~~~~~~~lt~~ 238 (550)
++.. .+|+++|.++.++. +|..-+-++.+...|-|+.+.|++.+|... ..+| ++ .+. .-..+..-
T Consensus 299 vtae---Qnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~---lr~y--~~--~~~----~c~ii~GH 364 (775)
T KOG0319|consen 299 VTAE---QNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPE---LRLY--TL--PTS----YCQIIPGH 364 (775)
T ss_pred EEcc---ceEEEEEccccEEehhhcCCchhheeeeecCCccceEEEEeCCCc---eEEE--ec--CCC----ceEEEeCc
Q ss_pred Cc-eEEEEECCCCCEEEEeecCCCCCCEEEEEEcCCCceeEeccCCCCChhhhhcCCCCCCeEEEEEcCCCcEEEEEEEc
Q 008873 239 KG-KHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLYEQPLTVPRIKRLQLEPPDIVQIQANDGTVLYGALYK 317 (550)
Q Consensus 239 ~~-~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~ 317 (550)
.. ..+.+.+.+| .++.+.+.-... .+|+++....+..-.-..+.+...--.=..-.....+-+....+.++..|.+.
T Consensus 365 ~e~vlSL~~~~~g-~llat~sKD~sv-ilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~ 442 (775)
T KOG0319|consen 365 TEAVLSLDVWSSG-DLLATGSKDKSV-ILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLP 442 (775)
T ss_pred hhheeeeeecccC-cEEEEecCCceE-EEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCC
No 425
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=76.78 E-value=10 Score=40.29 Aligned_cols=61 Identities=7% Similarity=-0.088 Sum_probs=37.4
Q ss_pred EEEEEeEeecCCEEEEEEcCCCCceeEEEEEEeCCCCCCCCCCCeeeCCCCceEEEEECCCCCEEEEeecCC
Q 008873 189 VEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTNGKGKHVAVLDHNMRNFVDFHDSL 260 (550)
Q Consensus 189 ~~~~~~~s~dg~~l~f~~~~~~~~~~~l~~v~~~~~g~~~~~~~~~lt~~~~~~~~~~s~dg~~l~~~~s~~ 260 (550)
+.+. .+||||+||+..+.+.. ..+| |+. .+. -+-.+-...-..+.++||+|++|+-++.+-
T Consensus 579 itd~-~FS~DgrWlisasmD~t---Ir~w--Dlp-t~~----lID~~~vd~~~~sls~SPngD~LAT~Hvd~ 639 (910)
T KOG1539|consen 579 ITDM-TFSPDGRWLISASMDST---IRTW--DLP-TGT----LIDGLLVDSPCTSLSFSPNGDFLATVHVDQ 639 (910)
T ss_pred eeee-EeCCCCcEEEEeecCCc---EEEE--ecc-Ccc----eeeeEecCCcceeeEECCCCCEEEEEEecC
Confidence 4454 49999999997776532 3444 541 221 111222222356778999999998887663
No 426
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=76.34 E-value=64 Score=30.57 Aligned_cols=33 Identities=9% Similarity=0.215 Sum_probs=19.2
Q ss_pred ceeEEEEECCCCeEEEEEEecCCCceEEEEEECCC
Q 008873 88 EYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKT 122 (550)
Q Consensus 88 ~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~ 122 (550)
.+.-.-.|||||.-|+..+.. +-..+|.++.+.
T Consensus 50 nf~kgckWSPDGSciL~~sed--n~l~~~nlP~dl 82 (406)
T KOG2919|consen 50 NFLKGCKWSPDGSCILSLSED--NCLNCWNLPFDL 82 (406)
T ss_pred hhhccceeCCCCceEEeeccc--CeeeEEecChhh
Confidence 344556899999955544322 233466665543
No 427
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=75.75 E-value=80 Score=30.59 Aligned_cols=106 Identities=15% Similarity=0.128 Sum_probs=55.1
Q ss_pred cEEEEEeCCCceeeccc-cc--------------CeEEEEEEeEeecCCEEEEEEcC----CCCce-------eEEEEEE
Q 008873 167 RHLYLHDINGTCLGPIT-EG--------------DWMVEQIVGVNEASGQVYFTGTL----DGPLE-------SHLYCAK 220 (550)
Q Consensus 167 ~~l~~~~~~~~~~~~lT-~~--------------~~~~~~~~~~s~dg~~l~f~~~~----~~~~~-------~~l~~v~ 220 (550)
..|+.++++|...+.+. .. +.-.... .+++||+.||..... ++... ..|+..+
T Consensus 112 p~I~~~~~~G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~l-a~~~dG~~l~~~~E~~l~~d~~~~~~~~~~~~ri~~~d 190 (326)
T PF13449_consen 112 PRIRRFDLDGRVIRRFPVPAAFLPDANGTSGRRNNRGFEGL-AVSPDGRTLFAAMESPLKQDGPRANPDNGSPLRILRYD 190 (326)
T ss_pred CEEEEECCCCcccceEccccccccccCccccccCCCCeEEE-EECCCCCEEEEEECccccCCCcccccccCceEEEEEec
Confidence 78999998865434331 11 1223344 489999988777652 22111 5566666
Q ss_pred eCCCCCCCCCC-CeeeC------CCCceEEEEECCCCCEEEEeecCC---CCCCEEEEEEcCCC
Q 008873 221 LYPDWNHTLEA-PVKLT------NGKGKHVAVLDHNMRNFVDFHDSL---DSPPRILLCSLQDG 274 (550)
Q Consensus 221 ~~~~g~~~~~~-~~~lt------~~~~~~~~~~s~dg~~l~~~~s~~---~~p~~l~~~~~~~g 274 (550)
....+. ...+ .-++. ...+...+.+-+|++.+++-.... ..-..||.+++...
T Consensus 191 ~~~~~~-~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLER~~~~~~~~~~ri~~v~l~~a 253 (326)
T PF13449_consen 191 PKTPGE-PVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLERDFSPGTGNYKRIYRVDLSDA 253 (326)
T ss_pred CCCCCc-cceEEEEeCCccccccCCCCceeEEEECCCcEEEEEccCCCCccceEEEEEEEcccc
Confidence 632121 0000 01111 122345555668888777665521 23356788887543
No 428
>PRK13614 lipoprotein LpqB; Provisional
Probab=75.43 E-value=1.1e+02 Score=32.15 Aligned_cols=65 Identities=11% Similarity=-0.127 Sum_probs=35.3
Q ss_pred CCcEEEEEccCCccEEEEE--eC-CCceeecccccC-----eEEEEEEeEeecCCEEEEEEcCCCCceeEEEEEEe
Q 008873 154 SGGFIWASEKTGFRHLYLH--DI-NGTCLGPITEGD-----WMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKL 221 (550)
Q Consensus 154 ~~~~~~~s~~~g~~~l~~~--~~-~~~~~~~lT~~~-----~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~~v~~ 221 (550)
+-+.+++...+|..+|++- -. ..|+++.|+... -.+.+. .|..++. |+......+ .+..++.+.+
T Consensus 445 G~R~Avi~~~~g~~~V~va~V~R~~~G~P~~L~~~~~~~~~~~~~sl-~W~~~~s-l~V~~~~~~-~~~~~~~v~v 517 (573)
T PRK13614 445 GVRALVISEQNGKSRVQVAGIVRNEDGTPRELTAPITLAADSDADTG-AWVGDST-VVVTKASAT-SNVVPELLSV 517 (573)
T ss_pred ccEEEEEEEeCCccEEEEEEEEeCCCCCeEEccCceecccCCCccee-EEcCCCE-EEEEeccCC-CcceEEEEEe
Confidence 3336666666676666663 22 234556666531 133343 4876765 555544322 3467788887
No 429
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=75.19 E-value=71 Score=31.59 Aligned_cols=53 Identities=15% Similarity=0.019 Sum_probs=29.0
Q ss_pred eEeecCCEEEEEEcCCC---------------CceeEEEEEEeCCCCCCCCCCCeeeCCCCc-eEEEEECCCCCEE
Q 008873 194 GVNEASGQVYFTGTLDG---------------PLESHLYCAKLYPDWNHTLEAPVKLTNGKG-KHVAVLDHNMRNF 253 (550)
Q Consensus 194 ~~s~dg~~l~f~~~~~~---------------~~~~~l~~v~~~~~g~~~~~~~~~lt~~~~-~~~~~~s~dg~~l 253 (550)
.|.+|| +|||+....+ .....+++++. +++ +.+.+..+-. -..++|+++|+.+
T Consensus 130 ~~gpDG-~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~p--dg~----~~e~~a~G~rnp~Gl~~d~~G~l~ 198 (367)
T TIGR02604 130 AWGPDG-WLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNP--DGG----KLRVVAHGFQNPYGHSVDSWGDVF 198 (367)
T ss_pred eECCCC-CEEEecccCCCceeccCCCccCcccccCceEEEEec--CCC----eEEEEecCcCCCccceECCCCCEE
Confidence 488998 5888654210 01135787777 554 3444443211 2345788888653
No 430
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=75.18 E-value=1.2e+02 Score=32.25 Aligned_cols=218 Identities=9% Similarity=0.044 Sum_probs=0.0
Q ss_pred cceEEEcCCCCeEEEEEEeCCCCCeEEEeecCCCCC------CCCCcccccCCCCCCCCCe-------EEEEEEECCCCc
Q 008873 4 KTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSV------GSEAQEDHAYPFAGASNVK-------VRLGVVSAAGGP 70 (550)
Q Consensus 4 ~~~~~wSPdg~~lay~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~y~~~g~~~~~-------~~l~~~d~~~~~ 70 (550)
++++..||||++||= .......++.+.-..++ .+..+--+.|.++-..+.- .-|+|+|.+-.=
T Consensus 462 ~R~~~vSp~gqhLAs----GDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny 537 (1080)
T KOG1408|consen 462 FRALAVSPDGQHLAS----GDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNY 537 (1080)
T ss_pred eEEEEECCCcceecc----cCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEeccccc
Q ss_pred eEEEEcccCCCCCCCCCceeEEEEECCCC-----------eEEEEEEecCCCceEEEEEECCCCceEEEEEeecCceeec
Q 008873 71 VSWMDLQCGGTDQNYDEEYLARVNWMHGN-----------ILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNL 139 (550)
Q Consensus 71 ~~~l~~~~~~~~~~~~~~~~~~~~wspDg-----------~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~ 139 (550)
.-+-+++ +-.-.++++.|.-.| |.|.|..++......++.-...+-....|....-+
T Consensus 538 ~l~qtld-------~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vd----- 605 (1080)
T KOG1408|consen 538 DLVQTLD-------GHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVD----- 605 (1080)
T ss_pred chhhhhc-------ccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeC-----
Q ss_pred cCccccCCCCCccCCCcEEEEEccCCccEEEEEeCCCceeecccccCeEE-EEEEeEeecCCEEEEEEcCCCCceeEEEE
Q 008873 140 HDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTCLGPITEGDWMV-EQIVGVNEASGQVYFTGTLDGPLESHLYC 218 (550)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~~~~~~~lT~~~~~~-~~~~~~s~dg~~l~f~~~~~~~~~~~l~~ 218 (550)
..-+++.+.-.+- +|-+++...++.+.+=.|.... ....-+.-|-..+|+...-.+ ..|..
T Consensus 606 -------------p~~k~v~t~cQDr--nirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsd---ktl~~ 667 (1080)
T KOG1408|consen 606 -------------PTSKLVVTVCQDR--NIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSD---KTLCF 667 (1080)
T ss_pred -------------CCcceEEEEeccc--ceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecC---CceEE
Q ss_pred EEeCCCCCCCCCCCeeeCC-CCceEEEEECCCCCEEEEeecCC
Q 008873 219 AKLYPDWNHTLEAPVKLTN-GKGKHVAVLDHNMRNFVDFHDSL 260 (550)
Q Consensus 219 v~~~~~g~~~~~~~~~lt~-~~~~~~~~~s~dg~~l~~~~s~~ 260 (550)
+|+. .|. -..+.+. ++-...+.|++|++.|+-+.++.
T Consensus 668 ~Df~-sgE----cvA~m~GHsE~VTG~kF~nDCkHlISvsgDg 705 (1080)
T KOG1408|consen 668 VDFV-SGE----CVAQMTGHSEAVTGVKFLNDCKHLISVSGDG 705 (1080)
T ss_pred EEec-cch----hhhhhcCcchheeeeeecccchhheeecCCc
No 431
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=75.17 E-value=28 Score=34.64 Aligned_cols=141 Identities=11% Similarity=0.065 Sum_probs=68.0
Q ss_pred CceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeec-CceeeccCccccCCCCCccCCCcEEEEEccCC
Q 008873 87 EEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEEL-DSWVNLHDCFTPLDKGVTKYSGGFIWASEKTG 165 (550)
Q Consensus 87 ~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g 165 (550)
...+..++||.+|..++.+.-+. .|-+-|+++|++..-..... +..+ .|.| ++..++++-- -
T Consensus 258 ~k~Vrd~~~s~~g~~fLS~sfD~----~lKlwDtETG~~~~~f~~~~~~~cv----kf~p-------d~~n~fl~G~--s 320 (503)
T KOG0282|consen 258 RKPVRDASFNNCGTSFLSASFDR----FLKLWDTETGQVLSRFHLDKVPTCV----KFHP-------DNQNIFLVGG--S 320 (503)
T ss_pred hhhhhhhhccccCCeeeeeecce----eeeeeccccceEEEEEecCCCceee----ecCC-------CCCcEEEEec--C
Confidence 34567789999999776654332 25666899998765443221 1111 1111 1211222211 1
Q ss_pred ccEEEEEeCCCceeecc-cccCeEEEEEEeEeecCCEEEEEEcCCCCceeEEEEEEeCCCCCCCCCCCeeeCCCCceEE-
Q 008873 166 FRHLYLHDINGTCLGPI-TEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTNGKGKHV- 243 (550)
Q Consensus 166 ~~~l~~~~~~~~~~~~l-T~~~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~~v~~~~~g~~~~~~~~~lt~~~~~~~- 243 (550)
...|..+|..+++..+= -+.-..+..+. +-++|++++-++... ...||...+ . .+..+......++
T Consensus 321 d~ki~~wDiRs~kvvqeYd~hLg~i~~i~-F~~~g~rFissSDdk---s~riWe~~~--~------v~ik~i~~~~~hsm 388 (503)
T KOG0282|consen 321 DKKIRQWDIRSGKVVQEYDRHLGAILDIT-FVDEGRRFISSSDDK---SVRIWENRI--P------VPIKNIADPEMHTM 388 (503)
T ss_pred CCcEEEEeccchHHHHHHHhhhhheeeeE-EccCCceEeeeccCc---cEEEEEcCC--C------ccchhhcchhhccC
Confidence 24567777766653221 11111123333 556777666554443 256665444 1 1111111122333
Q ss_pred --EEECCCCCEEEEe
Q 008873 244 --AVLDHNMRNFVDF 256 (550)
Q Consensus 244 --~~~s~dg~~l~~~ 256 (550)
+...|++++++.-
T Consensus 389 P~~~~~P~~~~~~aQ 403 (503)
T KOG0282|consen 389 PCLTLHPNGKWFAAQ 403 (503)
T ss_pred cceecCCCCCeehhh
Confidence 3567888876543
No 432
>PF12566 DUF3748: Protein of unknown function (DUF3748); InterPro: IPR022223 This domain family is found in bacteria and eukaryotes, and is approximately 120 amino acids in length.
Probab=74.96 E-value=2.8 Score=32.48 Aligned_cols=17 Identities=29% Similarity=0.362 Sum_probs=14.2
Q ss_pred eEEEcCCCCeEEEEEEe
Q 008873 6 GYWWSLDSKFIAFTQVD 22 (550)
Q Consensus 6 ~~~wSPdg~~lay~~~~ 22 (550)
-..|||||++|.|+-.|
T Consensus 72 vHvfSpDG~~lSFTYND 88 (122)
T PF12566_consen 72 VHVFSPDGSWLSFTYND 88 (122)
T ss_pred ceEECCCCCEEEEEecc
Confidence 45799999999998655
No 433
>PLN02847 triacylglycerol lipase
Probab=74.56 E-value=8.1 Score=39.89 Aligned_cols=21 Identities=29% Similarity=0.240 Sum_probs=17.8
Q ss_pred CceEEEEechhHHHHHHHHhh
Q 008873 412 GHIGLYGWSYGGYLSAITLAR 432 (550)
Q Consensus 412 ~~i~i~G~S~GG~~a~~~~~~ 432 (550)
=+|.|+|||+||.+|..++..
T Consensus 251 YkLVITGHSLGGGVAALLAil 271 (633)
T PLN02847 251 FKIKIVGHSLGGGTAALLTYI 271 (633)
T ss_pred CeEEEeccChHHHHHHHHHHH
Confidence 489999999999999877653
No 434
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=74.49 E-value=25 Score=35.98 Aligned_cols=51 Identities=10% Similarity=0.119 Sum_probs=31.9
Q ss_pred EEEEEECCCCceEEEEcccCCCCCCCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCc
Q 008873 60 RLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQ 124 (550)
Q Consensus 60 ~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~ 124 (550)
.|.+||...+.+..... ...-..++|.|||..++....+++ |-..|..-+.
T Consensus 282 SiiLyD~~~~~t~~~ka----------~~~P~~iaWHp~gai~~V~s~qGe----lQ~FD~ALsp 332 (545)
T PF11768_consen 282 SIILYDTTRGVTLLAKA----------EFIPTLIAWHPDGAIFVVGSEQGE----LQCFDMALSP 332 (545)
T ss_pred eEEEEEcCCCeeeeeee----------cccceEEEEcCCCcEEEEEcCCce----EEEEEeecCc
Confidence 46788888775543322 223456799999998877765543 4444554443
No 435
>KOG4569 consensus Predicted lipase [Lipid transport and metabolism]
Probab=74.01 E-value=4.9 Score=39.09 Aligned_cols=54 Identities=19% Similarity=0.077 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhh----C---CCeeEEEEEcCCcCCc
Q 008873 394 EDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLAR----F---PDVFQCAVSGAPVTSW 449 (550)
Q Consensus 394 ~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~----~---~~~~~~~v~~~~~~~~ 449 (550)
..+.+.++.|+.+.. .-+|.+.|||+||.+|..++.. . +..++...-..|-+..
T Consensus 155 ~~~~~~~~~L~~~~~--~~~i~vTGHSLGgAlA~laa~~i~~~~~~~~~~v~v~tFG~PRvGn 215 (336)
T KOG4569|consen 155 SGLDAELRRLIELYP--NYSIWVTGHSLGGALASLAALDLVKNGLKTSSPVKVYTFGQPRVGN 215 (336)
T ss_pred HHHHHHHHHHHHhcC--CcEEEEecCChHHHHHHHHHHHHHHcCCCCCCceEEEEecCCCccc
Confidence 345556666666532 4589999999999999888763 1 2344444445554443
No 436
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=73.39 E-value=1e+02 Score=30.57 Aligned_cols=68 Identities=18% Similarity=0.204 Sum_probs=37.8
Q ss_pred eEeecCCEEEEEEcCCCCceeEEEEEEeCCCCCCCCCCCeeeCCCCc-eEEEEECCCCCEEEEeecCCCCCCEEEEEEcC
Q 008873 194 GVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTNGKG-KHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQ 272 (550)
Q Consensus 194 ~~s~dg~~l~f~~~~~~~~~~~l~~v~~~~~g~~~~~~~~~lt~~~~-~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~ 272 (550)
.+.||| .|+-++..++ ...+| ++. .+. ...++....+ ...+.||.+|-+++..+.+ ..+.+.|++
T Consensus 354 ~fHpDg-Lifgtgt~d~--~vkiw--dlk-s~~----~~a~Fpght~~vk~i~FsENGY~Lat~add----~~V~lwDLR 419 (506)
T KOG0289|consen 354 AFHPDG-LIFGTGTPDG--VVKIW--DLK-SQT----NVAKFPGHTGPVKAISFSENGYWLATAADD----GSVKLWDLR 419 (506)
T ss_pred eEcCCc-eEEeccCCCc--eEEEE--EcC-Ccc----ccccCCCCCCceeEEEeccCceEEEEEecC----CeEEEEEeh
Confidence 488998 3444555554 35666 552 121 2233332222 5667899999766655433 247788875
Q ss_pred CCc
Q 008873 273 DGS 275 (550)
Q Consensus 273 ~g~ 275 (550)
.-+
T Consensus 420 Kl~ 422 (506)
T KOG0289|consen 420 KLK 422 (506)
T ss_pred hhc
Confidence 444
No 437
>PF08237 PE-PPE: PE-PPE domain; InterPro: IPR013228 The human pathogen Mycobacterium tuberculosis harbours a large number of genes that encode proteins whose N-termini contain the characteristic motifs Pro-Glu (PE) or Pro-Pro-Glu (PPE). A subgroup of the PE proteins contains polymorphic GC-rich sequences (PGRS), while a subgroup of the PPE proteins contains major polymorphic tandem repeats (MPTR). The function of most of these proteins remains unknown []. However, the PE_PGRS proteins from Mycobacterium marinum are secreted by components of the ESX-5 system that belongs to the recently defined type VII secretion systems []. It has also been reported that the PE_PGRS family of proteins contains multiple calcium-binding and glycine-rich sequence motifs GGXGXD/NXUX. This sequence repeat constitutes a calcium-binding parallel beta-roll or parallel beta-helix structure and is found in RTX toxins secreted by many Gram-negative bacteria []. This domain is found C-terminal to the PE (IPR000084 from INTERPRO) and PPE (IPR000030 from INTERPRO) domains. The secondary structure of this domain is predicted to be a mixture of alpha helices and beta strands [].
Probab=73.34 E-value=15 Score=33.28 Aligned_cols=36 Identities=28% Similarity=0.573 Sum_probs=25.4
Q ss_pred CCCceEEEEechhHHHHHHHHhhC-------CCeeEEEEEcCC
Q 008873 410 KVGHIGLYGWSYGGYLSAITLARF-------PDVFQCAVSGAP 445 (550)
Q Consensus 410 d~~~i~i~G~S~GG~~a~~~~~~~-------~~~~~~~v~~~~ 445 (550)
..+++.|+|+|+|+.++...+.+. ++....+....|
T Consensus 46 ~~~~vvV~GySQGA~Va~~~~~~l~~~~~~~~~~l~fVl~gnP 88 (225)
T PF08237_consen 46 AGGPVVVFGYSQGAVVASNVLRRLAADGDPPPDDLSFVLIGNP 88 (225)
T ss_pred CCCCEEEEEECHHHHHHHHHHHHHHhcCCCCcCceEEEEecCC
Confidence 567899999999999998776542 134555555555
No 438
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=72.53 E-value=82 Score=29.24 Aligned_cols=176 Identities=14% Similarity=0.097 Sum_probs=83.7
Q ss_pred CeEEEEEEECCCCceE-EEEcccCCCCCCCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCc
Q 008873 57 VKVRLGVVSAAGGPVS-WMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDS 135 (550)
Q Consensus 57 ~~~~l~~~d~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~ 135 (550)
.++.|..+|+++|+.. +..++. .-+... ++-- ++ .|+.+..++. ..+.+|.++-+...=..-..++
T Consensus 66 G~S~l~~~d~~tg~~~~~~~l~~-----~~FgEG---it~~-~d-~l~qLTWk~~---~~f~yd~~tl~~~~~~~y~~EG 132 (264)
T PF05096_consen 66 GQSSLRKVDLETGKVLQSVPLPP-----RYFGEG---ITIL-GD-KLYQLTWKEG---TGFVYDPNTLKKIGTFPYPGEG 132 (264)
T ss_dssp TEEEEEEEETTTSSEEEEEE-TT-----T--EEE---EEEE-TT-EEEEEESSSS---EEEEEETTTTEEEEEEE-SSS-
T ss_pred CcEEEEEEECCCCcEEEEEECCc-----ccccee---EEEE-CC-EEEEEEecCC---eEEEEccccceEEEEEecCCcc
Confidence 4689999999999875 334320 111122 2222 22 4444444543 4788899876543322334456
Q ss_pred eeeccCccccCCCCCccCCCcEEEEEccCCccEEEEEeCCCce-ee--cccccCeEEE---EEEeEeecCCEEEEEEcCC
Q 008873 136 WVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTC-LG--PITEGDWMVE---QIVGVNEASGQVYFTGTLD 209 (550)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~~~~-~~--~lT~~~~~~~---~~~~~s~dg~~l~f~~~~~ 209 (550)
|--. ..+..++.|| |-..|+.+|+++-+ .+ ++|.+...+. ..- |- +| .||...-..
T Consensus 133 WGLt-------------~dg~~Li~SD--GS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE-~i-~G-~IyANVW~t 194 (264)
T PF05096_consen 133 WGLT-------------SDGKRLIMSD--GSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELE-YI-NG-KIYANVWQT 194 (264)
T ss_dssp -EEE-------------ECSSCEEEE---SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEE-EE-TT-EEEEEETTS
T ss_pred eEEE-------------cCCCEEEEEC--CccceEEECCcccceEEEEEEEECCEECCCcEeEE-EE-cC-EEEEEeCCC
Confidence 6311 1223566775 56789999976532 22 3444333222 121 21 44 566444332
Q ss_pred CCceeEEEEEEeCCCCCCC-------C-----CCCeeeCCCCceEEEEECCCCCEEEEeecCCCCCCEEEEEEc
Q 008873 210 GPLESHLYCAKLYPDWNHT-------L-----EAPVKLTNGKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSL 271 (550)
Q Consensus 210 ~~~~~~l~~v~~~~~g~~~-------~-----~~~~~lt~~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~ 271 (550)
..|.++|.. +|.-. . ....+....+-...+++.|+.+.+.++.-.+ |.+|.+.+
T Consensus 195 ----d~I~~Idp~-tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK~W---p~lyeV~l 260 (264)
T PF05096_consen 195 ----DRIVRIDPE-TGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGKLW---PKLYEVKL 260 (264)
T ss_dssp ----SEEEEEETT-T-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEETT----SEEEEEEE
T ss_pred ----CeEEEEeCC-CCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeCCC---CceEEEEE
Confidence 467888873 33200 0 0000111112245668888888887776554 46666654
No 439
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=72.50 E-value=75 Score=28.73 Aligned_cols=141 Identities=16% Similarity=0.068 Sum_probs=66.7
Q ss_pred EEEEEECCCCceEEE-EcccCCCCCCCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCce-e
Q 008873 60 RLGVVSAAGGPVSWM-DLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSW-V 137 (550)
Q Consensus 60 ~l~~~d~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~-~ 137 (550)
.|+.+|+++|+..+- ..... +............++..+++... ...|+.+|+++|+..--.....+.. .
T Consensus 87 ~l~~~d~~tG~~~W~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~----~g~l~~~d~~tG~~~w~~~~~~~~~~~ 157 (238)
T PF13360_consen 87 SLYALDAKTGKVLWSIYLTSS-----PPAGVRSSSSPAVDGDRLYVGTS----SGKLVALDPKTGKLLWKYPVGEPRGSS 157 (238)
T ss_dssp EEEEEETTTSCEEEEEEE-SS-----CTCSTB--SEEEEETTEEEEEET----CSEEEEEETTTTEEEEEEESSTT-SS-
T ss_pred eeEecccCCcceeeeeccccc-----cccccccccCceEecCEEEEEec----cCcEEEEecCCCcEEEEeecCCCCCCc
Confidence 788999888887654 23211 00111122223334665555443 2359999999998643332221110 0
Q ss_pred eccCccccCCCCCccCCCcEEEEEccCCccEEEEEeCCCceeecccccCeEEEEEEeEeecCCEEEEEEcCCCCceeEEE
Q 008873 138 NLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLY 217 (550)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~~~~~~~lT~~~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~ 217 (550)
... .+......+... ++.+|++...|. ++.+|..+++... +...-.... ....+++.||+.. .+ .+|+
T Consensus 158 ~~~-~~~~~~~~~~~~-~~~v~~~~~~g~--~~~~d~~tg~~~w-~~~~~~~~~--~~~~~~~~l~~~~-~~----~~l~ 225 (238)
T PF13360_consen 158 PIS-SFSDINGSPVIS-DGRVYVSSGDGR--VVAVDLATGEKLW-SKPISGIYS--LPSVDGGTLYVTS-SD----GRLY 225 (238)
T ss_dssp -EE-EETTEEEEEECC-TTEEEEECCTSS--EEEEETTTTEEEE-EECSS-ECE--CEECCCTEEEEEE-TT----TEEE
T ss_pred cee-eecccccceEEE-CCEEEEEcCCCe--EEEEECCCCCEEE-EecCCCccC--CceeeCCEEEEEe-CC----CEEE
Confidence 000 000000000112 236666655553 6666887776332 111111111 1456777888877 33 4788
Q ss_pred EEEe
Q 008873 218 CAKL 221 (550)
Q Consensus 218 ~v~~ 221 (550)
.+++
T Consensus 226 ~~d~ 229 (238)
T PF13360_consen 226 ALDL 229 (238)
T ss_dssp EEET
T ss_pred EEEC
Confidence 8898
No 440
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=72.31 E-value=48 Score=32.16 Aligned_cols=65 Identities=8% Similarity=0.018 Sum_probs=36.1
Q ss_pred EEEEEEECCCCc--eEEEEcccCCCCCCCCCceeEEEEECCCCeEEEEEEecC---CCceEEEEEECCCC
Q 008873 59 VRLGVVSAAGGP--VSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRS---QTKLKVLKFDIKTG 123 (550)
Q Consensus 59 ~~l~~~d~~~~~--~~~l~~~~~~~~~~~~~~~~~~~~wspDg~~i~~~~~r~---~~~~~l~~~~~~~g 123 (550)
.+|+.+|.++.. ..+......+.........++.+.+-+|+++++....-. ....+||.+++...
T Consensus 184 ~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLER~~~~~~~~~~ri~~v~l~~a 253 (326)
T PF13449_consen 184 LRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLERDFSPGTGNYKRIYRVDLSDA 253 (326)
T ss_pred EEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEEccCCCCccceEEEEEEEcccc
Confidence 678888887622 223222211100011456778899999999665432211 23457888887653
No 441
>COG3673 Uncharacterized conserved protein [Function unknown]
Probab=71.46 E-value=23 Score=33.47 Aligned_cols=70 Identities=16% Similarity=0.175 Sum_probs=47.0
Q ss_pred CCcEEEEECCCCCCCCchh--------hHHHHhh-ccCCCchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHh
Q 008873 361 KGILVWKLDNRGTARRGLK--------FEASIKH-NCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLA 431 (550)
Q Consensus 361 ~G~~vv~~d~rG~g~~~~~--------~~~~~~~-~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~ 431 (550)
.+-.+++.=-.|.|..|-+ +.....+ .+|..-.+.+..|..+|.+... -.++|.++|+|-|++.+-.+|.
T Consensus 63 d~~~qv~yYd~GVGt~Gfdavvdvrrrl~~~~~gsmFg~gL~~nI~~AYrFL~~~ye-pGD~Iy~FGFSRGAf~aRVlag 141 (423)
T COG3673 63 DGVTQVIYYDEGVGTGGFDAVVDVRRRLEKLSGGSMFGQGLVQNIREAYRFLIFNYE-PGDEIYAFGFSRGAFSARVLAG 141 (423)
T ss_pred CCceEEEEecCCcccccchhhHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHhcC-CCCeEEEeeccchhHHHHHHHH
Confidence 5777777766777655422 1111112 2344446778899999998743 3579999999999999976665
No 442
>PRK02888 nitrous-oxide reductase; Validated
Probab=71.35 E-value=1.4e+02 Score=31.53 Aligned_cols=123 Identities=10% Similarity=-0.023 Sum_probs=62.1
Q ss_pred CeEEEEEEECCCCce-EEEEcccCCCCCCCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCc
Q 008873 57 VKVRLGVVSAAGGPV-SWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDS 135 (550)
Q Consensus 57 ~~~~l~~~d~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~ 135 (550)
.+.-+.++|.++-+. .++.++ .......++|||++++..+...+....+..++...........-..
T Consensus 213 y~~~vSvID~etmeV~~qV~Vd----------gnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~-- 280 (635)
T PRK02888 213 YRSLFTAVDAETMEVAWQVMVD----------GNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIAR-- 280 (635)
T ss_pred eeEEEEEEECccceEEEEEEeC----------CCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchHH--
Confidence 345677889998655 455443 1223468999999887775333323345666554332111111000
Q ss_pred eeeccCccccCCCCCccCCCcEEEEEccCCccEEEEEeCCC----c-e-eecccccCeEEEEEEeEeecCCEEEEEEcCC
Q 008873 136 WVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDING----T-C-LGPITEGDWMVEQIVGVNEASGQVYFTGTLD 209 (550)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~~----~-~-~~~lT~~~~~~~~~~~~s~dg~~l~f~~~~~ 209 (550)
+. . . ...+++.++. -.++-++|..+ + + ...|.-|+. ..+. ..||||+++|.+....
T Consensus 281 -ie---a--~------vkdGK~~~V~----gn~V~VID~~t~~~~~~~v~~yIPVGKs-PHGV-~vSPDGkylyVanklS 342 (635)
T PRK02888 281 -IE---E--A------VKAGKFKTIG----GSKVPVVDGRKAANAGSALTRYVPVPKN-PHGV-NTSPDGKYFIANGKLS 342 (635)
T ss_pred -HH---H--h------hhCCCEEEEC----CCEEEEEECCccccCCcceEEEEECCCC-ccce-EECCCCCEEEEeCCCC
Confidence 00 0 0 0112255442 24677888654 1 2 233333432 1233 3899999998776543
No 443
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=70.99 E-value=94 Score=29.27 Aligned_cols=70 Identities=17% Similarity=0.269 Sum_probs=41.2
Q ss_pred EeecCCEEEEEEcCCCCceeEEEEEEeCCCCCCCCCCCeeeCC------CCceEEEEECCCCCEEEEeecCCCCCCEEEE
Q 008873 195 VNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTN------GKGKHVAVLDHNMRNFVDFHDSLDSPPRILL 268 (550)
Q Consensus 195 ~s~dg~~l~f~~~~~~~~~~~l~~v~~~~~g~~~~~~~~~lt~------~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~ 268 (550)
+|+.| .||.++..++. ..|| + |- ..+++.. +....+..|+.||++++- |+.+ +.+++
T Consensus 269 Ys~t~-~lYvTaSkDG~--Iklw--D----GV----S~rCv~t~~~AH~gsevcSa~Ftkn~kyiLs--SG~D--S~vkL 331 (430)
T KOG0640|consen 269 YSSTG-SLYVTASKDGA--IKLW--D----GV----SNRCVRTIGNAHGGSEVCSAVFTKNGKYILS--SGKD--STVKL 331 (430)
T ss_pred ecCCc-cEEEEeccCCc--EEee--c----cc----cHHHHHHHHhhcCCceeeeEEEccCCeEEee--cCCc--ceeee
Confidence 67666 69999998874 5666 3 21 1123321 112455679999998743 2322 35666
Q ss_pred EEcCCCceeEecc
Q 008873 269 CSLQDGSLVLPLY 281 (550)
Q Consensus 269 ~~~~~g~~~~~l~ 281 (550)
.++.+|+.+++-+
T Consensus 332 WEi~t~R~l~~Yt 344 (430)
T KOG0640|consen 332 WEISTGRMLKEYT 344 (430)
T ss_pred eeecCCceEEEEe
Confidence 6777787655443
No 444
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=70.94 E-value=82 Score=28.53 Aligned_cols=79 Identities=16% Similarity=0.133 Sum_probs=41.7
Q ss_pred EEEEECCCCeEEEEEEecCCCceEE--EEEECCCCce---EEEEEeecCceeeccCccccCCCCCccCCCcEEEEEccCC
Q 008873 91 ARVNWMHGNILTAQVLNRSQTKLKV--LKFDIKTGQR---KVILVEELDSWVNLHDCFTPLDKGVTKYSGGFIWASEKTG 165 (550)
Q Consensus 91 ~~~~wspDg~~i~~~~~r~~~~~~l--~~~~~~~g~~---~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g 165 (550)
..+.|+.|.|.+++...- ...| |.+|..||.. +.|....... +.-.+.+.+...+.++.+|++--+|
T Consensus 161 Ngl~Wd~d~K~fY~iDsl---n~~V~a~dyd~~tG~~snr~~i~dlrk~~-----~~e~~~PDGm~ID~eG~L~Va~~ng 232 (310)
T KOG4499|consen 161 NGLAWDSDAKKFYYIDSL---NYEVDAYDYDCPTGDLSNRKVIFDLRKSQ-----PFESLEPDGMTIDTEGNLYVATFNG 232 (310)
T ss_pred ccccccccCcEEEEEccC---ceEEeeeecCCCcccccCcceeEEeccCC-----CcCCCCCCcceEccCCcEEEEEecC
Confidence 346899999987776322 2335 8888899863 4455433211 1111111111223344455444333
Q ss_pred ccEEEEEeCCCce
Q 008873 166 FRHLYLHDINGTC 178 (550)
Q Consensus 166 ~~~l~~~~~~~~~ 178 (550)
..++++|+.+|+
T Consensus 233 -~~V~~~dp~tGK 244 (310)
T KOG4499|consen 233 -GTVQKVDPTTGK 244 (310)
T ss_pred -cEEEEECCCCCc
Confidence 357778877664
No 445
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=69.37 E-value=37 Score=31.93 Aligned_cols=18 Identities=28% Similarity=0.453 Sum_probs=14.2
Q ss_pred ceEEEcCCCCeEEEEEEe
Q 008873 5 TGYWWSLDSKFIAFTQVD 22 (550)
Q Consensus 5 ~~~~wSPdg~~lay~~~~ 22 (550)
.++.||+||+.|.-.+.|
T Consensus 69 ~sl~WS~dgr~LltsS~D 86 (405)
T KOG1273|consen 69 TSLCWSRDGRKLLTSSRD 86 (405)
T ss_pred eEEEecCCCCEeeeecCC
Confidence 467899999999766554
No 446
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=69.33 E-value=47 Score=33.36 Aligned_cols=161 Identities=7% Similarity=0.018 Sum_probs=80.5
Q ss_pred CCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceE-EEEEeecCceeeccCccccCCCCCccCCCc-EEEEE
Q 008873 84 NYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRK-VILVEELDSWVNLHDCFTPLDKGVTKYSGG-FIWAS 161 (550)
Q Consensus 84 ~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s 161 (550)
...+.|+.+-..+|||+.++.--. .....||-+-..+-..+ +|+.. .... +.- ..++|. +.|..
T Consensus 462 l~rdnyiRSckL~pdgrtLivGGe--astlsiWDLAapTprikaeltss-apaC------yAL-----a~spDakvcFsc 527 (705)
T KOG0639|consen 462 LNRDNYIRSCKLLPDGRTLIVGGE--ASTLSIWDLAAPTPRIKAELTSS-APAC------YAL-----AISPDAKVCFSC 527 (705)
T ss_pred cCcccceeeeEecCCCceEEeccc--cceeeeeeccCCCcchhhhcCCc-chhh------hhh-----hcCCccceeeee
Confidence 345678888999999996654321 11223555544443322 22211 1111 111 234554 66655
Q ss_pred ccCCccEEEEEeCCCc-eeecccccCeEEEEEEeEeecCCEEEEEEcCCCCceeEEEEEEeCCCCCCCCCCCeeeCCCCc
Q 008873 162 EKTGFRHLYLHDINGT-CLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTNGKG 240 (550)
Q Consensus 162 ~~~g~~~l~~~~~~~~-~~~~lT~~~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~~v~~~~~g~~~~~~~~~lt~~~~ 240 (550)
-.+|. |.++|+... ..|++-...--+.-+ .+++||.+|+-- -.+ .-|...|+. .+. ++.+-.....
T Consensus 528 csdGn--I~vwDLhnq~~VrqfqGhtDGascI-dis~dGtklWTG-GlD----ntvRcWDlr-egr----qlqqhdF~SQ 594 (705)
T KOG0639|consen 528 CSDGN--IAVWDLHNQTLVRQFQGHTDGASCI-DISKDGTKLWTG-GLD----NTVRCWDLR-EGR----QLQQHDFSSQ 594 (705)
T ss_pred ccCCc--EEEEEcccceeeecccCCCCCceeE-EecCCCceeecC-CCc----cceeehhhh-hhh----hhhhhhhhhh
Confidence 55664 555565443 345553322222333 378888777632 222 234444552 121 2222222223
Q ss_pred eEEEEECCCCCEEEEeecCCCCCCEEEEEEcCCCc
Q 008873 241 KHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGS 275 (550)
Q Consensus 241 ~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~ 275 (550)
+.+....|+++++++-+.+ ..+.++.....+
T Consensus 595 IfSLg~cP~~dWlavGMen----s~vevlh~skp~ 625 (705)
T KOG0639|consen 595 IFSLGYCPTGDWLAVGMEN----SNVEVLHTSKPE 625 (705)
T ss_pred heecccCCCccceeeeccc----CcEEEEecCCcc
Confidence 5555677999999887765 366776664333
No 447
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=69.08 E-value=1.7e+02 Score=31.38 Aligned_cols=174 Identities=11% Similarity=0.067 Sum_probs=84.1
Q ss_pred EEEEEECCCCce-EEEEcccCCCCCCCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCce-EEEEEeecCcee
Q 008873 60 RLGVVSAAGGPV-SWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQR-KVILVEELDSWV 137 (550)
Q Consensus 60 ~l~~~d~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~-~~l~~~~~~~~~ 137 (550)
+|.+|+.++.+- +.++ ..|.-...+-|.++.++...+.+ +|-++++.++.. ..+..+.+.-|.
T Consensus 395 SikiWn~~t~kciRTi~-----------~~y~l~~~Fvpgd~~Iv~G~k~G----el~vfdlaS~~l~Eti~AHdgaIWs 459 (888)
T KOG0306|consen 395 SIKIWNRDTLKCIRTIT-----------CGYILASKFVPGDRYIVLGTKNG----ELQVFDLASASLVETIRAHDGAIWS 459 (888)
T ss_pred cEEEEEccCcceeEEec-----------cccEEEEEecCCCceEEEeccCC----ceEEEEeehhhhhhhhhccccceee
Confidence 466777776543 3331 23777778999999877654332 244555555543 222233344453
Q ss_pred eccCccccCCCCCccCCCcEEEEEccCC--ccEE-EEEeCCCceeeccccc-------CeEEEEEEeEeecCCEEEEEEc
Q 008873 138 NLHDCFTPLDKGVTKYSGGFIWASEKTG--FRHL-YLHDINGTCLGPITEG-------DWMVEQIVGVNEASGQVYFTGT 207 (550)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~s~~~g--~~~l-~~~~~~~~~~~~lT~~-------~~~~~~~~~~s~dg~~l~f~~~ 207 (550)
-. . ..++.+++..|-..- ++.. ++.+..|.+.+.|.-. .-++-. ..+||||+.|++.--
T Consensus 460 i~-----~-----~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~-v~~Spdgk~LaVsLL 528 (888)
T KOG0306|consen 460 IS-----L-----SPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLC-VSVSPDGKLLAVSLL 528 (888)
T ss_pred ee-----e-----cCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEE-EEEcCCCcEEEEEec
Confidence 11 0 113334554432211 3333 2333223332323211 112333 358999988877655
Q ss_pred CCCCceeEEEEEEeCCCCCCCCCCCeeeCCCC-ceEEEEECCCCCEEEEeecCCCCCCEEEEEEc
Q 008873 208 LDGPLESHLYCAKLYPDWNHTLEAPVKLTNGK-GKHVAVLDHNMRNFVDFHDSLDSPPRILLCSL 271 (550)
Q Consensus 208 ~~~~~~~~l~~v~~~~~g~~~~~~~~~lt~~~-~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~ 271 (550)
... .++|.+|.- .- -.-|..-. -..+..+|||++.+ .++| ++..-.+|=+|.
T Consensus 529 dnT---VkVyflDtl--KF-----flsLYGHkLPV~smDIS~DSkli-vTgS-ADKnVKiWGLdF 581 (888)
T KOG0306|consen 529 DNT---VKVYFLDTL--KF-----FLSLYGHKLPVLSMDISPDSKLI-VTGS-ADKNVKIWGLDF 581 (888)
T ss_pred cCe---EEEEEecce--ee-----eeeecccccceeEEeccCCcCeE-Eecc-CCCceEEecccc
Confidence 443 788887731 00 00111100 14556789999755 4433 344345665554
No 448
>PF09910 DUF2139: Uncharacterized protein conserved in archaea (DUF2139); InterPro: IPR016675 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=69.05 E-value=1e+02 Score=28.98 Aligned_cols=103 Identities=13% Similarity=0.147 Sum_probs=62.8
Q ss_pred cCCccEEEEEeCCCceeecccccC------e--EEEEEEeEeecCCEEEEEEcCCCCceeEEEEEEeCCCCCCCCCCCee
Q 008873 163 KTGFRHLYLHDINGTCLGPITEGD------W--MVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVK 234 (550)
Q Consensus 163 ~~g~~~l~~~~~~~~~~~~lT~~~------~--~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~~v~~~~~g~~~~~~~~~ 234 (550)
++-+.||-.+|.+.++.+.|-... | +|+++. .+|=.+.|++.-.+ +..+..||+++.. .| +.++
T Consensus 74 ~NKYSHVH~yd~e~~~VrLLWkesih~~~~WaGEVSdIl-YdP~~D~LLlAR~D-Gh~nLGvy~ldr~-~g-----~~~~ 145 (339)
T PF09910_consen 74 RNKYSHVHEYDTENDSVRLLWKESIHDKTKWAGEVSDIL-YDPYEDRLLLARAD-GHANLGVYSLDRR-TG-----KAEK 145 (339)
T ss_pred eeccceEEEEEcCCCeEEEEEecccCCccccccchhhee-eCCCcCEEEEEecC-CcceeeeEEEccc-CC-----ceee
Confidence 345889999998888887776543 3 355665 78888888877554 4457889999872 33 5677
Q ss_pred eCCCCceEEEEECCCCCEEEEeecC-CCCCCEEEEEEcCCCce
Q 008873 235 LTNGKGKHVAVLDHNMRNFVDFHDS-LDSPPRILLCSLQDGSL 276 (550)
Q Consensus 235 lt~~~~~~~~~~s~dg~~l~~~~s~-~~~p~~l~~~~~~~g~~ 276 (550)
|...+..-...+ .| +.+|...+ ...-+.|..+|+.+++-
T Consensus 146 L~~~ps~KG~~~-~D--~a~F~i~~~~~g~~~i~~~Dli~~~~ 185 (339)
T PF09910_consen 146 LSSNPSLKGTLV-HD--YACFGINNFHKGVSGIHCLDLISGKW 185 (339)
T ss_pred ccCCCCcCceEe-ee--eEEEeccccccCCceEEEEEccCCeE
Confidence 776542111100 11 12222221 13446888999887763
No 449
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=68.82 E-value=95 Score=28.45 Aligned_cols=241 Identities=12% Similarity=0.063 Sum_probs=114.9
Q ss_pred EEEECC--CCeEEEEE-EecC-CCceEEEEEECCCC-ceEEEEEe-ecCceeeccCccccCCCCCccC--CCcEEEEEcc
Q 008873 92 RVNWMH--GNILTAQV-LNRS-QTKLKVLKFDIKTG-QRKVILVE-ELDSWVNLHDCFTPLDKGVTKY--SGGFIWASEK 163 (550)
Q Consensus 92 ~~~wsp--Dg~~i~~~-~~r~-~~~~~l~~~~~~~g-~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~s~~ 163 (550)
++.+|| ++++++.. ++-+ .+...|+++++..+ ..+..... ..++-.+. .|+ .+..++....
T Consensus 13 svqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV-----------~Wse~~e~~~~~a~G 81 (311)
T KOG0277|consen 13 SVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDV-----------AWSENHENQVIAASG 81 (311)
T ss_pred eeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeeecccceeEe-----------eecCCCcceEEEEec
Confidence 468898 56644333 2222 13457999988633 33332221 11111111 233 2335555555
Q ss_pred CCccEEEEEeCCCceeecccccCeEEEEEEeEeecCCEEEEEEcCCCCceeEEEEEEeCCCCCCCCCCCeeeCCC-CceE
Q 008873 164 TGFRHLYLHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTNG-KGKH 242 (550)
Q Consensus 164 ~g~~~l~~~~~~~~~~~~lT~~~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~~v~~~~~g~~~~~~~~~lt~~-~~~~ 242 (550)
+|--+||=.....+.+..+-+...+|...- |.+..+..+++++-++. ..||..+. ..+ ++..... .-+.
T Consensus 82 DGSLrl~d~~~~s~Pi~~~kEH~~EV~Svd-wn~~~r~~~ltsSWD~T--iKLW~~~r--~~S-----v~Tf~gh~~~Iy 151 (311)
T KOG0277|consen 82 DGSLRLFDLTMPSKPIHKFKEHKREVYSVD-WNTVRRRIFLTSSWDGT--IKLWDPNR--PNS-----VQTFNGHNSCIY 151 (311)
T ss_pred CceEEEeccCCCCcchhHHHhhhhheEEec-cccccceeEEeeccCCc--eEeecCCC--Ccc-----eEeecCCccEEE
Confidence 665555543322322233334455565544 77777778878765553 67775444 111 1122211 1256
Q ss_pred EEEECCCCCEEEEeecCCCCCCEEEEEEcCCCceeEeccCCCCChhhhhcCCCCCCe-EEEEEcCCCcEEEEEEEcCCCC
Q 008873 243 VAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLYEQPLTVPRIKRLQLEPPD-IVQIQANDGTVLYGALYKPDES 321 (550)
Q Consensus 243 ~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~l~~~~~~P~~~ 321 (550)
...|||.-..++...|+ +.--.++-+.. .|+.+ .+... . ..+-...+.+.. .+.++..-+..|.+|-++--
T Consensus 152 ~a~~sp~~~nlfas~Sg-d~~l~lwdvr~-~gk~~-~i~ah--~-~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~-- 223 (311)
T KOG0277|consen 152 QAAFSPHIPNLFASASG-DGTLRLWDVRS-PGKFM-SIEAH--N-SEILCCDWSKYNHNVLATGGVDNLVRGWDIRNL-- 223 (311)
T ss_pred EEecCCCCCCeEEEccC-CceEEEEEecC-CCcee-EEEec--c-ceeEeecccccCCcEEEecCCCceEEEEehhhc--
Confidence 66888865555555444 33335555554 35432 23321 1 122234555553 45555554567888876532
Q ss_pred CCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCC--cEEEEECCC
Q 008873 322 RYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKG--ILVWKLDNR 371 (550)
Q Consensus 322 ~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G--~~vv~~d~r 371 (550)
+.|+-++ .|...... .-.|++. .+..|++.. +.|-..|+.
T Consensus 224 -----r~pl~eL-~gh~~AVR-kvk~Sph---~~~lLaSasYDmT~riw~~~ 265 (311)
T KOG0277|consen 224 -----RTPLFEL-NGHGLAVR-KVKFSPH---HASLLASASYDMTVRIWDPE 265 (311)
T ss_pred -----cccceee-cCCceEEE-EEecCcc---hhhHhhhccccceEEecccc
Confidence 2365443 34322211 1234432 256676654 456666654
No 450
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=67.02 E-value=98 Score=27.93 Aligned_cols=131 Identities=15% Similarity=0.008 Sum_probs=62.4
Q ss_pred EEEEEECCCCceE-EEEcccCCCCCCCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCceee
Q 008873 60 RLGVVSAAGGPVS-WMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVN 138 (550)
Q Consensus 60 ~l~~~d~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~ 138 (550)
.|..+|+++|+.. +..+. ......... -.++++.++... ....|+.+|+.+|+..--........
T Consensus 4 ~l~~~d~~tG~~~W~~~~~------~~~~~~~~~--~~~~~~~v~~~~----~~~~l~~~d~~tG~~~W~~~~~~~~~-- 69 (238)
T PF13360_consen 4 TLSALDPRTGKELWSYDLG------PGIGGPVAT--AVPDGGRVYVAS----GDGNLYALDAKTGKVLWRFDLPGPIS-- 69 (238)
T ss_dssp EEEEEETTTTEEEEEEECS------SSCSSEEET--EEEETTEEEEEE----TTSEEEEEETTTSEEEEEEECSSCGG--
T ss_pred EEEEEECCCCCEEEEEECC------CCCCCccce--EEEeCCEEEEEc----CCCEEEEEECCCCCEEEEeecccccc--
Confidence 5788999887664 44432 111222111 233444444432 23469999999998543333222110
Q ss_pred ccCccccCCCCCccCCCcEEEEEccCCccEEEEEeCCCceee-c--cccc-CeEEEEEEeEeecCCEEEEEEcCCCCcee
Q 008873 139 LHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTCLG-P--ITEG-DWMVEQIVGVNEASGQVYFTGTLDGPLES 214 (550)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~~~~~~-~--lT~~-~~~~~~~~~~s~dg~~l~f~~~~~~~~~~ 214 (550)
..+ ....+.+++.+ .++ .|+.+|..+|+.. . .+.. ............+++.+++.... .
T Consensus 70 ----~~~-----~~~~~~v~v~~-~~~--~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----g 132 (238)
T PF13360_consen 70 ----GAP-----VVDGGRVYVGT-SDG--SLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSS-----G 132 (238)
T ss_dssp ----SGE-----EEETTEEEEEE-TTS--EEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETC-----S
T ss_pred ----cee-----eeccccccccc-cee--eeEecccCCcceeeeeccccccccccccccCceEecCEEEEEecc-----C
Confidence 001 11233344444 333 8999997666532 2 2111 00011111133346777777652 3
Q ss_pred EEEEEEe
Q 008873 215 HLYCAKL 221 (550)
Q Consensus 215 ~l~~v~~ 221 (550)
.|+.+++
T Consensus 133 ~l~~~d~ 139 (238)
T PF13360_consen 133 KLVALDP 139 (238)
T ss_dssp EEEEEET
T ss_pred cEEEEec
Confidence 6777776
No 451
>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]
Probab=66.96 E-value=1.2e+02 Score=29.64 Aligned_cols=86 Identities=10% Similarity=0.084 Sum_probs=46.8
Q ss_pred cEEEEEeCCCceeecccccCeEEEEEEeEeecCCEEEEEEcCCCCceeEEEEEEeCCCCCCCCCCCeeeCC-CCc-eEEE
Q 008873 167 RHLYLHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTN-GKG-KHVA 244 (550)
Q Consensus 167 ~~l~~~~~~~~~~~~lT~~~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~~v~~~~~g~~~~~~~~~lt~-~~~-~~~~ 244 (550)
.+|+.+|..++..+.|-.+-.=..+. ..|+|++.+.|.-... ..|-+..+ .|... +..+.+.. -+| -.++
T Consensus 199 GRl~~YD~~tK~~~VLld~L~F~NGl-aLS~d~sfvl~~Et~~----~ri~rywi--~g~k~-gt~EvFa~~LPG~PDNI 270 (376)
T KOG1520|consen 199 GRLFRYDPSTKVTKVLLDGLYFPNGL-ALSPDGSFVLVAETTT----ARIKRYWI--KGPKA-GTSEVFAEGLPGYPDNI 270 (376)
T ss_pred cceEEecCcccchhhhhhcccccccc-cCCCCCCEEEEEeecc----ceeeeeEe--cCCcc-CchhhHhhcCCCCCcce
Confidence 46888888777777776643222334 4899999988885543 34444455 22210 01122222 122 2334
Q ss_pred EECCCCCEEEEeecCC
Q 008873 245 VLDHNMRNFVDFHDSL 260 (550)
Q Consensus 245 ~~s~dg~~l~~~~s~~ 260 (550)
..+++|.+.+...+..
T Consensus 271 R~~~~G~fWVal~~~~ 286 (376)
T KOG1520|consen 271 RRDSTGHFWVALHSKR 286 (376)
T ss_pred eECCCCCEEEEEeccc
Confidence 5567887766665543
No 452
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=66.88 E-value=9.2 Score=35.25 Aligned_cols=31 Identities=16% Similarity=0.055 Sum_probs=23.8
Q ss_pred CCceEEEEECCCCCEEEEeecCCCCCCEEEEEEcC
Q 008873 238 GKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQ 272 (550)
Q Consensus 238 ~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~ 272 (550)
.++.+..+.||||+.|+.++.+. .|.+.++.
T Consensus 229 ~d~i~kmSlSPdg~~La~ih~sG----~lsLW~iP 259 (282)
T PF15492_consen 229 QDGIFKMSLSPDGSLLACIHFSG----SLSLWEIP 259 (282)
T ss_pred CCceEEEEECCCCCEEEEEEcCC----eEEEEecC
Confidence 35678889999999999887763 66666653
No 453
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=66.62 E-value=1.1e+02 Score=28.17 Aligned_cols=179 Identities=8% Similarity=0.037 Sum_probs=88.4
Q ss_pred EEEEEEECC-CCceEEEEcccCCCCCCCCCceeEEEEECCCCe-EEEEEEecCCCceEEEEEECCCCceEEEEEeecCce
Q 008873 59 VRLGVVSAA-GGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNI-LTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSW 136 (550)
Q Consensus 59 ~~l~~~d~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~wspDg~-~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~ 136 (550)
.+|++.+++ .+.++.... .+.+..+..++||+.-. +++..+..+ ..+||-.....+-....-+.+.+.+
T Consensus 38 G~L~ile~~~~~gi~e~~s-------~d~~D~LfdV~Wse~~e~~~~~a~GDG--SLrl~d~~~~s~Pi~~~kEH~~EV~ 108 (311)
T KOG0277|consen 38 GRLFILEVTDPKGIQECQS-------YDTEDGLFDVAWSENHENQVIAASGDG--SLRLFDLTMPSKPIHKFKEHKREVY 108 (311)
T ss_pred ceEEEEecCCCCCeEEEEe-------eecccceeEeeecCCCcceEEEEecCc--eEEEeccCCCCcchhHHHhhhhheE
Confidence 578999996 444443321 23445678899999877 444444332 3456653332221111111111111
Q ss_pred eeccCccccCCCCCccCC--CcEEEEEccCCccEEEEEeCCCceeecccccCeEEEEEEeEeecCCEEEEEEcCCCCcee
Q 008873 137 VNLHDCFTPLDKGVTKYS--GGFIWASEKTGFRHLYLHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLES 214 (550)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~--~~~~~~s~~~g~~~l~~~~~~~~~~~~lT~~~~~~~~~~~~s~dg~~l~f~~~~~~~~~~ 214 (550)
. - .|.. ...+..|.-+|--.||..+.... .+..+..+.-+.+. .|+|--.-++.+.+.++ ..
T Consensus 109 S-------v-----dwn~~~r~~~ltsSWD~TiKLW~~~r~~S-v~Tf~gh~~~Iy~a-~~sp~~~nlfas~Sgd~--~l 172 (311)
T KOG0277|consen 109 S-------V-----DWNTVRRRIFLTSSWDGTIKLWDPNRPNS-VQTFNGHNSCIYQA-AFSPHIPNLFASASGDG--TL 172 (311)
T ss_pred E-------e-----ccccccceeEEeeccCCceEeecCCCCcc-eEeecCCccEEEEE-ecCCCCCCeEEEccCCc--eE
Confidence 1 1 1221 12344454456556666654332 22233334334443 48887666666655554 36
Q ss_pred EEEEEEeCCCCCCCCCCCeeeCCC-CceEEEEECCCCCEEEEeecCCCCCCEEEEEEcC
Q 008873 215 HLYCAKLYPDWNHTLEAPVKLTNG-KGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQ 272 (550)
Q Consensus 215 ~l~~v~~~~~g~~~~~~~~~lt~~-~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~ 272 (550)
.||-+.. .|+ ...+... .....+.|+.-..+++++...- -.++..|+.
T Consensus 173 ~lwdvr~--~gk-----~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd---~~vr~wDir 221 (311)
T KOG0277|consen 173 RLWDVRS--PGK-----FMSIEAHNSEILCCDWSKYNHNVLATGGVD---NLVRGWDIR 221 (311)
T ss_pred EEEEecC--CCc-----eeEEEeccceeEeecccccCCcEEEecCCC---ceEEEEehh
Confidence 7786665 443 2222221 1355567877667777765432 245555554
No 454
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=66.27 E-value=1.4e+02 Score=29.35 Aligned_cols=115 Identities=11% Similarity=0.047 Sum_probs=54.0
Q ss_pred CCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEE------CCCCceEEEEEeecCceeeccCccccCC---CCCccCC
Q 008873 84 NYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFD------IKTGQRKVILVEELDSWVNLHDCFTPLD---KGVTKYS 154 (550)
Q Consensus 84 ~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~------~~~g~~~~l~~~~~~~~~~~~~~~~~~~---~~~~~~~ 154 (550)
......+..++|+|+|.+++...+.. .--||... .++ +.. ...+.|.-.. ...... --..|++
T Consensus 62 s~H~~aVN~vRf~p~gelLASg~D~g--~v~lWk~~~~~~~~~d~-e~~----~~ke~w~v~k-~lr~h~~diydL~Ws~ 133 (434)
T KOG1009|consen 62 SRHTRAVNVVRFSPDGELLASGGDGG--EVFLWKQGDVRIFDADT-EAD----LNKEKWVVKK-VLRGHRDDIYDLAWSP 133 (434)
T ss_pred cCCcceeEEEEEcCCcCeeeecCCCc--eEEEEEecCcCCccccc-hhh----hCccceEEEE-EecccccchhhhhccC
Confidence 45566788899999999887654332 22344433 222 100 0011222110 000000 0015677
Q ss_pred CcEEEEEccCCccEEEEEeCCCceee-cccccCeEEEEEEeEeecCCEEEEEEcC
Q 008873 155 GGFIWASEKTGFRHLYLHDINGTCLG-PITEGDWMVEQIVGVNEASGQVYFTGTL 208 (550)
Q Consensus 155 ~~~~~~s~~~g~~~l~~~~~~~~~~~-~lT~~~~~~~~~~~~s~dg~~l~f~~~~ 208 (550)
++.+..+- ..-..++.+|...|+.. .+..+...+... .|+|-++++.-.+..
T Consensus 134 d~~~l~s~-s~dns~~l~Dv~~G~l~~~~~dh~~yvqgv-awDpl~qyv~s~s~d 186 (434)
T KOG1009|consen 134 DSNFLVSG-SVDNSVRLWDVHAGQLLAILDDHEHYVQGV-AWDPLNQYVASKSSD 186 (434)
T ss_pred CCceeeee-eccceEEEEEeccceeEeecccccccccee-ecchhhhhhhhhccC
Confidence 76333321 12344666776555543 333333334444 488888777655544
No 455
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=65.96 E-value=1.1e+02 Score=28.01 Aligned_cols=136 Identities=13% Similarity=0.161 Sum_probs=65.1
Q ss_pred CCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecC-ceeeccCccccCCCCCccCCCc-EEEEEc
Q 008873 85 YDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELD-SWVNLHDCFTPLDKGVTKYSGG-FIWASE 162 (550)
Q Consensus 85 ~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~s~ 162 (550)
...+.+..+.|-...+.|+...... .-+|| |..+|+..+-.....+ .-.+ .+.++ ++.+++
T Consensus 141 ghtg~Ir~v~wc~eD~~iLSSadd~--tVRLW--D~rTgt~v~sL~~~s~VtSlE-------------vs~dG~ilTia~ 203 (334)
T KOG0278|consen 141 GHTGGIRTVLWCHEDKCILSSADDK--TVRLW--DHRTGTEVQSLEFNSPVTSLE-------------VSQDGRILTIAY 203 (334)
T ss_pred CCCCcceeEEEeccCceEEeeccCC--ceEEE--EeccCcEEEEEecCCCCccee-------------eccCCCEEEEec
Confidence 3345666777866666554442221 12344 5566665432222221 1111 12333 666665
Q ss_pred cCCccEEEEEeCCCceeeccccc--CeEEEEEEeEeecCCEEEEEEcCCCCceeEEEEEEeCCCCCCCCCCCeeeCCC-C
Q 008873 163 KTGFRHLYLHDINGTCLGPITEG--DWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTNG-K 239 (550)
Q Consensus 163 ~~g~~~l~~~~~~~~~~~~lT~~--~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~~v~~~~~g~~~~~~~~~lt~~-~ 239 (550)
.++ |-..|+++ ...|-+- ...+.. ++.+|+. .+|+.+.++ ..+|+.|.. .|. +......+ .
T Consensus 204 gss---V~Fwdaks--f~~lKs~k~P~nV~S-ASL~P~k-~~fVaGged----~~~~kfDy~-Tge----Ei~~~nkgh~ 267 (334)
T KOG0278|consen 204 GSS---VKFWDAKS--FGLLKSYKMPCNVES-ASLHPKK-EFFVAGGED----FKVYKFDYN-TGE----EIGSYNKGHF 267 (334)
T ss_pred Cce---eEEecccc--ccceeeccCcccccc-ccccCCC-ceEEecCcc----eEEEEEecc-CCc----eeeecccCCC
Confidence 444 22333332 1122111 223333 3477775 677776654 578888872 332 22222111 1
Q ss_pred c-eEEEEECCCCCEE
Q 008873 240 G-KHVAVLDHNMRNF 253 (550)
Q Consensus 240 ~-~~~~~~s~dg~~l 253 (550)
| .+.+.|||||...
T Consensus 268 gpVhcVrFSPdGE~y 282 (334)
T KOG0278|consen 268 GPVHCVRFSPDGELY 282 (334)
T ss_pred CceEEEEECCCCcee
Confidence 2 6778999999743
No 456
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=65.92 E-value=1.2e+02 Score=28.45 Aligned_cols=42 Identities=17% Similarity=0.102 Sum_probs=26.8
Q ss_pred CceeEEEEEC--CCCe-EEEEEEec--CCCceEEEEEECCCCceEEE
Q 008873 87 EEYLARVNWM--HGNI-LTAQVLNR--SQTKLKVLKFDIKTGQRKVI 128 (550)
Q Consensus 87 ~~~~~~~~ws--pDg~-~i~~~~~r--~~~~~~l~~~~~~~g~~~~l 128 (550)
.+......|| ||.+ +|+..+-. ..++-+|..++.++|+....
T Consensus 44 p~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~ 90 (364)
T KOG0290|consen 44 PWPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVED 90 (364)
T ss_pred CCceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceecc
Confidence 3445567888 6766 56654322 33566888888888886543
No 457
>COG4553 DepA Poly-beta-hydroxyalkanoate depolymerase [Lipid metabolism]
Probab=65.18 E-value=7.8 Score=35.88 Aligned_cols=65 Identities=23% Similarity=0.176 Sum_probs=48.5
Q ss_pred CcEEEEecCCCCCCChHHHHHHHHHHHHcCC-CeEEEEcCCCCCc--CCCCCcHHHHHHHHHHHHHHh
Q 008873 485 GKLLLVHGMIDENVHFRHTARLINALVAARK-PYEILIFPDERHM--PRRHRDRIYMEERIWEFIERT 549 (550)
Q Consensus 485 ~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~-~~~~~~~p~~~H~--~~~~~~~~~~~~~~~~fl~~~ 549 (550)
+-++-+-|++|++.-..|+....+.+..-.. ......-|+.||. |.+..-++..+.++.+|+.++
T Consensus 340 ~aL~tvEGEnDDIsgvGQTkAA~~LC~nIpe~mk~hy~qp~vGHYGVFnGsrfr~eIvPri~dFI~~~ 407 (415)
T COG4553 340 VALFTVEGENDDISGVGQTKAAHDLCSNIPEDMKQHYMQPDVGHYGVFNGSRFREEIVPRIRDFIRRY 407 (415)
T ss_pred eeEEEeecccccccccchhHHHHHHHhcChHHHHHHhcCCCCCccceeccchHHHHHHHHHHHHHHHh
Confidence 5788899999999888888776655432111 2345567999996 567777889999999999875
No 458
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=64.88 E-value=5.9 Score=38.19 Aligned_cols=55 Identities=25% Similarity=0.355 Sum_probs=42.2
Q ss_pred EEEcCCCCeEEEEEEeCCCCCeEEEeecCCCCCCCCCcccccCCCCCCCCCeEEEEEEECCCCceEEEEcccCCCCCCCC
Q 008873 7 YWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQNYD 86 (550)
Q Consensus 7 ~~wSPdg~~lay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~ 86 (550)
+.||||+..+++.+.+. .++++|+..|....+. .+.
T Consensus 129 L~Ws~d~~~l~s~s~dn------------------------------------s~~l~Dv~~G~l~~~~--------~dh 164 (434)
T KOG1009|consen 129 LAWSPDSNFLVSGSVDN------------------------------------SVRLWDVHAGQLLAIL--------DDH 164 (434)
T ss_pred hhccCCCceeeeeeccc------------------------------------eEEEEEeccceeEeec--------ccc
Confidence 56999999999987763 3578999998776542 355
Q ss_pred CceeEEEEECCCCeEEEEE
Q 008873 87 EEYLARVNWMHGNILTAQV 105 (550)
Q Consensus 87 ~~~~~~~~wspDg~~i~~~ 105 (550)
+.|+..++|.|=+++++..
T Consensus 165 ~~yvqgvawDpl~qyv~s~ 183 (434)
T KOG1009|consen 165 EHYVQGVAWDPLNQYVASK 183 (434)
T ss_pred ccccceeecchhhhhhhhh
Confidence 6788999999998866543
No 459
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=64.87 E-value=1.3e+02 Score=28.55 Aligned_cols=67 Identities=12% Similarity=0.090 Sum_probs=41.5
Q ss_pred EEEEEEECCCCceE-EEEcccCCCCCCCCCceeEEEEECC-CC---eEEEEEEecCCCceEEEEEECCCCceEEEEE
Q 008873 59 VRLGVVSAAGGPVS-WMDLQCGGTDQNYDEEYLARVNWMH-GN---ILTAQVLNRSQTKLKVLKFDIKTGQRKVILV 130 (550)
Q Consensus 59 ~~l~~~d~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~wsp-Dg---~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~ 130 (550)
..|.++|+.+++.. .+.+. + .......++..++... ++ ..+++..+.... .|.++|+.+|+.+++..
T Consensus 34 pKLv~~Dl~t~~li~~~~~p--~-~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~--glIV~dl~~~~s~Rv~~ 105 (287)
T PF03022_consen 34 PKLVAFDLKTNQLIRRYPFP--P-DIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGP--GLIVYDLATGKSWRVLH 105 (287)
T ss_dssp -EEEEEETTTTCEEEEEE----C-CCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTC--EEEEEETTTTEEEEEET
T ss_pred cEEEEEECCCCcEEEEEECC--h-HHcccccccceEEEEccCCCCcceEEEEeCCCcC--cEEEEEccCCcEEEEec
Confidence 57999999998763 44442 1 1222344556666644 21 256666666543 69999999999888764
No 460
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=64.63 E-value=41 Score=32.77 Aligned_cols=153 Identities=11% Similarity=0.164 Sum_probs=73.3
Q ss_pred ceeEEEEECCCCeEEEEEEecCCCceEEEEE---ECCCCceEEEEEeecCceeeccCccccCCCCCccCCCc-EEEEEcc
Q 008873 88 EYLARVNWMHGNILTAQVLNRSQTKLKVLKF---DIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYSGG-FIWASEK 163 (550)
Q Consensus 88 ~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~---~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~ 163 (550)
-.+..++|+|+|+.|+..+.-+ ...||-. +.++ .+-....+ .+.+ .|+.++ +++..|.
T Consensus 97 c~V~~v~WtPeGRRLltgs~SG--EFtLWNg~~fnFEt----ilQaHDs~--------Vr~m----~ws~~g~wmiSgD~ 158 (464)
T KOG0284|consen 97 CPVNVVRWTPEGRRLLTGSQSG--EFTLWNGTSFNFET----ILQAHDSP--------VRTM----KWSHNGTWMISGDK 158 (464)
T ss_pred cceeeEEEcCCCceeEeecccc--cEEEecCceeeHHH----Hhhhhccc--------ceeE----EEccCCCEEEEcCC
Confidence 3567889999999887765433 2334432 1111 00000000 1111 345555 6666677
Q ss_pred CCccEEEEEeCCCceeecccc-cCeEEEEEEeEeecCCEEEEEEcCCCCceeEEEEEEeCCCCCCCCCCCeeeCCCCc--
Q 008873 164 TGFRHLYLHDINGTCLGPITE-GDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTNGKG-- 240 (550)
Q Consensus 164 ~g~~~l~~~~~~~~~~~~lT~-~~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~~v~~~~~g~~~~~~~~~lt~~~~-- 240 (550)
+|.--+|--+.+.- +-+-. ..-.+.+.. +||.. ..+.+..+++. ..||-... .. +..+|. +.|
T Consensus 159 gG~iKyWqpnmnnV--k~~~ahh~eaIRdla-fSpnD-skF~t~SdDg~--ikiWdf~~---~k----ee~vL~-GHgwd 224 (464)
T KOG0284|consen 159 GGMIKYWQPNMNNV--KIIQAHHAEAIRDLA-FSPND-SKFLTCSDDGT--IKIWDFRM---PK----EERVLR-GHGWD 224 (464)
T ss_pred CceEEecccchhhh--HHhhHhhhhhhheec-cCCCC-ceeEEecCCCe--EEEEeccC---Cc----hhheec-cCCCC
Confidence 77544444332221 11111 112333443 77744 44555556553 55663222 11 334453 333
Q ss_pred eEEEEECCCCCEEEEeecCCCCCCEEEEEEcCCCce
Q 008873 241 KHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSL 276 (550)
Q Consensus 241 ~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~~ 276 (550)
.-++.|-|.- -++++.+.-+ -+-+.|.++|+.
T Consensus 225 VksvdWHP~k-gLiasgskDn---lVKlWDprSg~c 256 (464)
T KOG0284|consen 225 VKSVDWHPTK-GLIASGSKDN---LVKLWDPRSGSC 256 (464)
T ss_pred cceeccCCcc-ceeEEccCCc---eeEeecCCCcch
Confidence 4556777764 3566665543 566667777764
No 461
>PLN02213 sinapoylglucose-malate O-sinapoyltransferase/ carboxypeptidase
Probab=64.61 E-value=16 Score=35.29 Aligned_cols=84 Identities=17% Similarity=0.080 Sum_probs=49.4
Q ss_pred EEEEECCC-CCCCCchhhHHHHhhccCCCchHHHHHHHHHHH-HcCCCCCCceEEEEechhHHHHHHHHhh----C----
Q 008873 364 LVWKLDNR-GTARRGLKFEASIKHNCGRIDAEDQLTGAEWLI-KQGLAKVGHIGLYGWSYGGYLSAITLAR----F---- 433 (550)
Q Consensus 364 ~vv~~d~r-G~g~~~~~~~~~~~~~~~~~~~~D~~~~~~~l~-~~~~~d~~~i~i~G~S~GG~~a~~~~~~----~---- 433 (550)
.++.+|.+ |.|.|-......... .....+|+..+++... +.+......+.|.|-||||..+-.++.. .
T Consensus 3 NvLfiDqPvGvGfSy~~~~~~~~~--d~~~a~d~~~fL~~Ff~~~p~~~~~~fyI~GESYaG~YiP~la~~I~~~n~~~~ 80 (319)
T PLN02213 3 NIIFLDQPVGSGFSYSKTPIDKTG--DISEVKRTHEFLQKWLSRHPQYFSNPLYVVGDSYSGMIVPALVQEISQGNYICC 80 (319)
T ss_pred cEEEecCCCCCCCCCCCCCCCccc--cHHHHHHHHHHHHHHHHhCcccccCCeEEEeeccccchHHHHHHHHHhhccccc
Confidence 57888877 666542110000000 0012356666655443 3466667889999999999866555532 1
Q ss_pred --CCeeEEEEEcCCcCCc
Q 008873 434 --PDVFQCAVSGAPVTSW 449 (550)
Q Consensus 434 --~~~~~~~v~~~~~~~~ 449 (550)
+--+++++++.|.++.
T Consensus 81 ~~~inLkGi~IGNg~t~~ 98 (319)
T PLN02213 81 EPPINLQGYMLGNPVTYM 98 (319)
T ss_pred CCceeeeEEEeCCCCCCc
Confidence 1147899999888764
No 462
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=64.10 E-value=1.5e+02 Score=29.68 Aligned_cols=217 Identities=12% Similarity=0.042 Sum_probs=0.0
Q ss_pred ceEEEcCCCCeEEEEEEeCCCCCeEEEeecCCCCCCCCCcccccCCCCCCCCCeEEEEEEECCCCceEEEEcccCCCCCC
Q 008873 5 TGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQN 84 (550)
Q Consensus 5 ~~~~wSPdg~~lay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~ 84 (550)
.++.=||+|.+|+--... ..||+|.+.+|..-.+ +.
T Consensus 85 ~al~s~n~G~~l~ag~i~------------------------------------g~lYlWelssG~LL~v--------~~ 120 (476)
T KOG0646|consen 85 HALASSNLGYFLLAGTIS------------------------------------GNLYLWELSSGILLNV--------LS 120 (476)
T ss_pred eeeecCCCceEEEeeccc------------------------------------CcEEEEEeccccHHHH--------HH
Q ss_pred CCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCceeeccCccccCCCCCccCCCcEEEEEccC
Q 008873 85 YDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYSGGFIWASEKT 164 (550)
Q Consensus 85 ~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 164 (550)
.--..++.+.+|-||+.++...+.. ...-.-++++.....+. ...+-..|.++.-.+.-+....+-....++-.|..
T Consensus 121 aHYQ~ITcL~fs~dgs~iiTgskDg-~V~vW~l~~lv~a~~~~-~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D- 197 (476)
T KOG0646|consen 121 AHYQSITCLKFSDDGSHIITGSKDG-AVLVWLLTDLVSADNDH-SVKPLHIFSDHTLSITDLQIGSGGTNARLYTASED- 197 (476)
T ss_pred hhccceeEEEEeCCCcEEEecCCCc-cEEEEEEEeecccccCC-CccceeeeccCcceeEEEEecCCCccceEEEecCC-
Q ss_pred CccEEEEEeCCCceeecccccCeEEEEEEeEeecCCEEEEEEcCCCCceeEEEEEE------------eCCCCCCCCCCC
Q 008873 165 GFRHLYLHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAK------------LYPDWNHTLEAP 232 (550)
Q Consensus 165 g~~~l~~~~~~~~~~~~lT~~~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~~v~------------~~~~g~~~~~~~ 232 (550)
.-+-++++..+..-.=-..+....... .+|.+..+|.-+.+..-....++..+ . .+. +.
T Consensus 198 --~t~k~wdlS~g~LLlti~fp~si~av~-lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~--~~t----~~ 268 (476)
T KOG0646|consen 198 --RTIKLWDLSLGVLLLTITFPSSIKAVA-LDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHE--ENT----QI 268 (476)
T ss_pred --ceEEEEEeccceeeEEEecCCcceeEE-EcccccEEEecCCcceEEeeehhcCCccccccccccccc--ccc----ee
Q ss_pred eeeCCCCc--eEEE-EECCCCCEEEEeecCCCCCCEEEEEEcCCCceeEecc
Q 008873 233 VKLTNGKG--KHVA-VLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLY 281 (550)
Q Consensus 233 ~~lt~~~~--~~~~-~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~~~~~l~ 281 (550)
..+....+ .-++ ++|-||..| -+.+.-..+.+.|.....-+|.+.
T Consensus 269 ~~~~Gh~~~~~ITcLais~DgtlL----lSGd~dg~VcvWdi~S~Q~iRtl~ 316 (476)
T KOG0646|consen 269 NVLVGHENESAITCLAISTDGTLL----LSGDEDGKVCVWDIYSKQCIRTLQ 316 (476)
T ss_pred eeeccccCCcceeEEEEecCccEE----EeeCCCCCEEEEecchHHHHHHHh
No 463
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=63.11 E-value=21 Score=36.99 Aligned_cols=37 Identities=19% Similarity=0.148 Sum_probs=24.5
Q ss_pred EEEEEECCCCceEEEEcccCCCCCCCCCceeEEEEECCCCeEEEE
Q 008873 60 RLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQ 104 (550)
Q Consensus 60 ~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~wspDg~~i~~ 104 (550)
+|++||...|..-+ ++ ..-...+..++||.||++.+.
T Consensus 34 rlliyD~ndG~llq-tL-------KgHKDtVycVAys~dGkrFAS 70 (1081)
T KOG1538|consen 34 RLLVYDTSDGTLLQ-PL-------KGHKDTVYCVAYAKDGKRFAS 70 (1081)
T ss_pred EEEEEeCCCccccc-cc-------ccccceEEEEEEccCCceecc
Confidence 57889988775432 11 223346678999999987653
No 464
>COG1770 PtrB Protease II [Amino acid transport and metabolism]
Probab=62.16 E-value=2.2e+02 Score=30.26 Aligned_cols=146 Identities=11% Similarity=0.076 Sum_probs=75.0
Q ss_pred eeEEEEECCCCeEEEEEEecC-CCceEEEEEECCCCceE--EEEE-eecCceeeccCccccCCCCCccCCCcEEEEEccC
Q 008873 89 YLARVNWMHGNILTAQVLNRS-QTKLKVLKFDIKTGQRK--VILV-EELDSWVNLHDCFTPLDKGVTKYSGGFIWASEKT 164 (550)
Q Consensus 89 ~~~~~~wspDg~~i~~~~~r~-~~~~~l~~~~~~~g~~~--~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 164 (550)
.+..++-|||+++++++.+-. .....|-..++++|+.. .|+. ..+..|.+ ++.+++|++...
T Consensus 130 ~Lg~~~~s~D~~~la~s~D~~G~e~y~lr~kdL~tg~~~~d~i~~~~~~~~Wa~--------------d~~~lfYt~~d~ 195 (682)
T COG1770 130 SLGAASISPDHNLLAYSVDVLGDEQYTLRFKDLATGEELPDEITNTSGSFAWAA--------------DGKTLFYTRLDE 195 (682)
T ss_pred eeeeeeeCCCCceEEEEEecccccEEEEEEEecccccccchhhcccccceEEec--------------CCCeEEEEEEcC
Confidence 466788999999888775443 34567888899998743 2221 11112321 233466665543
Q ss_pred C--ccEEEEEeCCC--ceeeccccc---CeEEEEEEeEeecCCEEEEEEcCCCCceeEEEEEEeCCCCCCCCCCCeeeCC
Q 008873 165 G--FRHLYLHDING--TCLGPITEG---DWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTN 237 (550)
Q Consensus 165 g--~~~l~~~~~~~--~~~~~lT~~---~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~~v~~~~~g~~~~~~~~~lt~ 237 (550)
. ...||...+.+ .+-+.|=.. .+-+. ..-+...+.|++..+... ...++.++....+. .++.+..
T Consensus 196 ~~rp~kv~~h~~gt~~~~d~lvyeE~d~~f~~~--v~~s~s~~yi~i~~~~~~--tsE~~ll~a~~p~~----~p~vv~p 267 (682)
T COG1770 196 NHRPDKVWRHRLGTPGSSDELVYEEKDDRFFLS--VGRSRSEAYIVISLGSHI--TSEVRLLDADDPEA----EPKVVLP 267 (682)
T ss_pred CCCcceEEEEecCCCCCcceEEEEcCCCcEEEE--eeeccCCceEEEEcCCCc--ceeEEEEecCCCCC----ceEEEEE
Confidence 2 46788877655 333333221 12111 123445567777664433 35667677632332 4555554
Q ss_pred CCceEEEEECCCCCEEEEe
Q 008873 238 GKGKHVAVLDHNMRNFVDF 256 (550)
Q Consensus 238 ~~~~~~~~~s~dg~~l~~~ 256 (550)
....+......-+.++++.
T Consensus 268 r~~g~eY~~eh~~d~f~i~ 286 (682)
T COG1770 268 RENGVEYSVEHGGDRFYIL 286 (682)
T ss_pred cCCCcEEeeeecCcEEEEE
Confidence 3322222333334444333
No 465
>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]
Probab=61.84 E-value=1.4e+02 Score=29.16 Aligned_cols=103 Identities=13% Similarity=0.069 Sum_probs=52.6
Q ss_pred CccEEEEEeCCCceeecccccC----eEEEEEEeEeecCCEEEEEEcCCCCceeEEEEEEeCC--CCC-----CCCCCCe
Q 008873 165 GFRHLYLHDINGTCLGPITEGD----WMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYP--DWN-----HTLEAPV 233 (550)
Q Consensus 165 g~~~l~~~~~~~~~~~~lT~~~----~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~~v~~~~--~g~-----~~~~~~~ 233 (550)
++.-|+.++.+|++.+.++..- .-..+-..+++ ...|||+-....-..+++...-+.. .|. ...+..+
T Consensus 134 AYlGL~~V~p~g~~a~~l~~~~~G~~~kf~N~ldI~~-~g~vyFTDSSsk~~~rd~~~a~l~g~~~GRl~~YD~~tK~~~ 212 (376)
T KOG1520|consen 134 AYLGLLKVGPEGGLAELLADEAEGKPFKFLNDLDIDP-EGVVYFTDSSSKYDRRDFVFAALEGDPTGRLFRYDPSTKVTK 212 (376)
T ss_pred cceeeEEECCCCCcceeccccccCeeeeecCceeEcC-CCeEEEeccccccchhheEEeeecCCCccceEEecCcccchh
Confidence 5667888888888877777531 11111123556 4578888653221123333222211 121 0111222
Q ss_pred eeCCC-CceEEEEECCCCCEEEEeecCCCCCCEEEE
Q 008873 234 KLTNG-KGKHVAVLDHNMRNFVDFHDSLDSPPRILL 268 (550)
Q Consensus 234 ~lt~~-~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~ 268 (550)
.|-.+ ..-..++.|||++.+++.-....+-.++|+
T Consensus 213 VLld~L~F~NGlaLS~d~sfvl~~Et~~~ri~rywi 248 (376)
T KOG1520|consen 213 VLLDGLYFPNGLALSPDGSFVLVAETTTARIKRYWI 248 (376)
T ss_pred hhhhcccccccccCCCCCCEEEEEeeccceeeeeEe
Confidence 22221 123456899999988877666555445554
No 466
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=61.83 E-value=2e+02 Score=29.75 Aligned_cols=68 Identities=3% Similarity=-0.063 Sum_probs=44.7
Q ss_pred CCCCCCCCeEEEEEEECCCCceEEEEcccCCCCCCCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceE
Q 008873 50 PFAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRK 126 (550)
Q Consensus 50 ~~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~ 126 (550)
......++.++-.+|+...++.+++.+.+- +-...+...+++|+.+.++.....+. |.++|...+..+
T Consensus 227 s~s~~g~~~~d~ciYE~~r~klqrvsvtsi-----pL~s~v~~ca~sp~E~kLvlGC~DgS----iiLyD~~~~~t~ 294 (545)
T PF11768_consen 227 SISVKGEPSADSCIYECSRNKLQRVSVTSI-----PLPSQVICCARSPSEDKLVLGCEDGS----IILYDTTRGVTL 294 (545)
T ss_pred ecCCCCCceeEEEEEEeecCceeEEEEEEE-----ecCCcceEEecCcccceEEEEecCCe----EEEEEcCCCeee
Confidence 333445577888888888887776654321 12234566799999998877765543 778887766433
No 467
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=61.83 E-value=2.3e+02 Score=30.42 Aligned_cols=147 Identities=14% Similarity=0.101 Sum_probs=71.1
Q ss_pred eeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCce-EEEEEeecCceeeccCccccCCCCCccCCCcEEEEEccCCcc
Q 008873 89 YLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQR-KVILVEELDSWVNLHDCFTPLDKGVTKYSGGFIWASEKTGFR 167 (550)
Q Consensus 89 ~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~ 167 (550)
-+..++.|.|...++...+. ...|| +.++.++ +.++.. ++-. ..|.| +|.++...-++|-
T Consensus 375 dVRsl~vS~d~~~~~Sga~~---SikiW--n~~t~kciRTi~~~----y~l~-~~Fvp--------gd~~Iv~G~k~Ge- 435 (888)
T KOG0306|consen 375 DVRSLCVSSDSILLASGAGE---SIKIW--NRDTLKCIRTITCG----YILA-SKFVP--------GDRYIVLGTKNGE- 435 (888)
T ss_pred heeEEEeecCceeeeecCCC---cEEEE--EccCcceeEEeccc----cEEE-EEecC--------CCceEEEeccCCc-
Confidence 46677888887655443222 22344 4565554 444432 2111 11212 4557777666664
Q ss_pred EEEEEeCCCcee-ecccccCeEEEEEEeEeecCCEEEEEEcCCCCceeEEEEEEeC--CCCCCC----CCCCeeeCCCCc
Q 008873 168 HLYLHDINGTCL-GPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLY--PDWNHT----LEAPVKLTNGKG 240 (550)
Q Consensus 168 ~l~~~~~~~~~~-~~lT~~~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~~v~~~--~~g~~~----~~~~~~lt~~~~ 240 (550)
|-++|+.+... ..+-.++.....+ ..+||++.++-.+.+.. ..+|...+. ..|... ....+.|.-.+.
T Consensus 436 -l~vfdlaS~~l~Eti~AHdgaIWsi-~~~pD~~g~vT~saDkt---VkfWdf~l~~~~~gt~~k~lsl~~~rtLel~dd 510 (888)
T KOG0306|consen 436 -LQVFDLASASLVETIRAHDGAIWSI-SLSPDNKGFVTGSADKT---VKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDD 510 (888)
T ss_pred -eEEEEeehhhhhhhhhccccceeee-eecCCCCceEEecCCcE---EEEEeEEEEeccCcccceeeeeccceEEecccc
Confidence 34444433321 1121222222233 36788877665544432 344433321 123311 011123333344
Q ss_pred eEEEEECCCCCEEEEeecC
Q 008873 241 KHVAVLDHNMRNFVDFHDS 259 (550)
Q Consensus 241 ~~~~~~s~dg~~l~~~~s~ 259 (550)
...+.+||||++++...-+
T Consensus 511 vL~v~~Spdgk~LaVsLLd 529 (888)
T KOG0306|consen 511 VLCVSVSPDGKLLAVSLLD 529 (888)
T ss_pred EEEEEEcCCCcEEEEEecc
Confidence 6667899999999877655
No 468
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=61.46 E-value=30 Score=35.76 Aligned_cols=30 Identities=20% Similarity=0.320 Sum_probs=23.5
Q ss_pred EEEEECCCCeEEEEEEecCCCceEEEEEECCCCc
Q 008873 91 ARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQ 124 (550)
Q Consensus 91 ~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~ 124 (550)
.+.+|-|||+.|++....+ .|-++|+++|.
T Consensus 66 ~sL~W~~DGkllaVg~kdG----~I~L~Dve~~~ 95 (665)
T KOG4640|consen 66 ASLCWRPDGKLLAVGFKDG----TIRLHDVEKGG 95 (665)
T ss_pred eeeeecCCCCEEEEEecCC----eEEEEEccCCC
Confidence 4789999999887765443 38888998876
No 469
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=61.44 E-value=1.8e+02 Score=28.95 Aligned_cols=103 Identities=13% Similarity=0.102 Sum_probs=52.1
Q ss_pred cCCCcEEEEEcc-CCccEEEEEeCCCceeeccccc---CeEEEEEEeEeecCCEEEEEEcCCCCceeEEEEEEeCCCCCC
Q 008873 152 KYSGGFIWASEK-TGFRHLYLHDINGTCLGPITEG---DWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNH 227 (550)
Q Consensus 152 ~~~~~~~~~s~~-~g~~~l~~~~~~~~~~~~lT~~---~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~~v~~~~~g~~ 227 (550)
..||+++|..-. +| .|-++|+..+. .++.. .-.+..+ .++..|=+|+..+++. .+...|+......
T Consensus 355 fHpDgLifgtgt~d~--~vkiwdlks~~--~~a~Fpght~~vk~i-~FsENGY~Lat~add~-----~V~lwDLRKl~n~ 424 (506)
T KOG0289|consen 355 FHPDGLIFGTGTPDG--VVKIWDLKSQT--NVAKFPGHTGPVKAI-SFSENGYWLATAADDG-----SVKLWDLRKLKNF 424 (506)
T ss_pred EcCCceEEeccCCCc--eEEEEEcCCcc--ccccCCCCCCceeEE-EeccCceEEEEEecCC-----eEEEEEehhhccc
Confidence 357888876532 34 34455554432 33332 2234444 4888875555444432 1334465211110
Q ss_pred CCCCCeeeCCCCceEEEEECCCCCEEEEeecCCCCCCEEEEEEc
Q 008873 228 TLEAPVKLTNGKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSL 271 (550)
Q Consensus 228 ~~~~~~~lt~~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~ 271 (550)
+.-.+....+..++.|...|++++...++ -.+|.+.-
T Consensus 425 ---kt~~l~~~~~v~s~~fD~SGt~L~~~g~~----l~Vy~~~k 461 (506)
T KOG0289|consen 425 ---KTIQLDEKKEVNSLSFDQSGTYLGIAGSD----LQVYICKK 461 (506)
T ss_pred ---ceeeccccccceeEEEcCCCCeEEeecce----eEEEEEec
Confidence 11223333357778899999998766222 25666653
No 470
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=60.87 E-value=1.5e+02 Score=27.87 Aligned_cols=58 Identities=16% Similarity=-0.048 Sum_probs=34.8
Q ss_pred EEEEEECCCCceEEEEcccCCCCCCCCCceeEEEEECCCCe--EEEEEEecCCCceEEEEEECCCCceEEEE
Q 008873 60 RLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNI--LTAQVLNRSQTKLKVLKFDIKTGQRKVIL 129 (550)
Q Consensus 60 ~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~wspDg~--~i~~~~~r~~~~~~l~~~~~~~g~~~~l~ 129 (550)
.|.|||..|-+.... ...+..+.+-+|||=.. -++..-.|. .+|-+||+++|...-..
T Consensus 125 tlKVWDtnTlQ~a~~---------F~me~~VYshamSp~a~sHcLiA~gtr~---~~VrLCDi~SGs~sH~L 184 (397)
T KOG4283|consen 125 TLKVWDTNTLQEAVD---------FKMEGKVYSHAMSPMAMSHCLIAAGTRD---VQVRLCDIASGSFSHTL 184 (397)
T ss_pred eEEEeecccceeeEE---------eecCceeehhhcChhhhcceEEEEecCC---CcEEEEeccCCcceeee
Confidence 466777776543321 22345666678999654 233333343 35899999999875443
No 471
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=60.44 E-value=57 Score=33.19 Aligned_cols=131 Identities=13% Similarity=0.102 Sum_probs=58.9
Q ss_pred EEEEEEECCCCceEE-EEcccCCCCCCCCCceeEEEEECCCCe--EEEEEEe-cCCCceEEEEEECCCCceEEEEEeecC
Q 008873 59 VRLGVVSAAGGPVSW-MDLQCGGTDQNYDEEYLARVNWMHGNI--LTAQVLN-RSQTKLKVLKFDIKTGQRKVILVEELD 134 (550)
Q Consensus 59 ~~l~~~d~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~wspDg~--~i~~~~~-r~~~~~~l~~~~~~~g~~~~l~~~~~~ 134 (550)
..||-+|++.|++.. ..+ . .-+..+.+.||++ .+.-.+. -+-..+.|+++|+.-...-.|.-..+.
T Consensus 356 ~~l~klDIE~GKIVeEWk~--------~--~di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~k 425 (644)
T KOG2395|consen 356 DKLYKLDIERGKIVEEWKF--------E--DDINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSK 425 (644)
T ss_pred CcceeeecccceeeeEeec--------c--CCcceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeecc
Confidence 568888999988752 222 1 2256677888877 2321000 000133588887752211122211111
Q ss_pred ceeeccCccccCCCCCccCCCcEEEEEccCCccEEEEEeCCCceeecccccCe-EEEEEEeEeecCCEEEEEEc
Q 008873 135 SWVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTCLGPITEGDW-MVEQIVGVNEASGQVYFTGT 207 (550)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~~~~~~~lT~~~~-~~~~~~~~s~dg~~l~f~~~ 207 (550)
.+... ..|+- . +...+|++.+....| .|-+++.-+...+..-.|-. .+.. +-.+.||++|+-+..
T Consensus 426 qy~~k-~nFsc--~--aTT~sG~IvvgS~~G--dIRLYdri~~~AKTAlPgLG~~I~h-VdvtadGKwil~Tc~ 491 (644)
T KOG2395|consen 426 QYSTK-NNFSC--F--ATTESGYIVVGSLKG--DIRLYDRIGRRAKTALPGLGDAIKH-VDVTADGKWILATCK 491 (644)
T ss_pred ccccc-cccce--e--eecCCceEEEeecCC--cEEeehhhhhhhhhcccccCCceee-EEeeccCcEEEEecc
Confidence 11111 11111 0 124556665554555 34455543322222222211 1222 236779998886644
No 472
>PTZ00472 serine carboxypeptidase (CBP1); Provisional
Probab=59.65 E-value=17 Score=37.14 Aligned_cols=62 Identities=13% Similarity=0.096 Sum_probs=47.6
Q ss_pred CcEEEEecCCCCCCChHHHHHHHHHHHH-----------------cC---------C-----CeEEEEcCCCCCcCCCCC
Q 008873 485 GKLLLVHGMIDENVHFRHTARLINALVA-----------------AR---------K-----PYEILIFPDERHMPRRHR 533 (550)
Q Consensus 485 ~P~lii~G~~D~~v~~~~~~~~~~~l~~-----------------~~---------~-----~~~~~~~p~~~H~~~~~~ 533 (550)
.++||.+|..|.+|+....+++.++|.- .+ . ...++.++++||.. ..+
T Consensus 365 ikVLiYnGd~D~icn~~Gt~~wi~~L~w~g~~~f~~a~~~~w~~~~~~v~G~vk~~~~~~~~~l~~~~V~~AGH~v-p~d 443 (462)
T PTZ00472 365 VRVMIYAGDMDFICNWIGNKAWTLALQWPGNAEFNAAPDVPFSAVDGRWAGLVRSAASNTSSGFSFVQVYNAGHMV-PMD 443 (462)
T ss_pred ceEEEEECCcCeecCcHhHHHHHHhCCCCCccchhhcCccccEecCCEeceEEEEEecccCCCeEEEEECCCCccC-hhh
Confidence 6999999999999999888888887751 01 1 46677788999987 335
Q ss_pred cHHHHHHHHHHHHH
Q 008873 534 DRIYMEERIWEFIE 547 (550)
Q Consensus 534 ~~~~~~~~~~~fl~ 547 (550)
.....++.+.+|+.
T Consensus 444 ~P~~~~~~i~~fl~ 457 (462)
T PTZ00472 444 QPAVALTMINRFLR 457 (462)
T ss_pred HHHHHHHHHHHHHc
Confidence 56677777888875
No 473
>PF10605 3HBOH: 3HB-oligomer hydrolase (3HBOH) ; InterPro: IPR016582 This entry represents a group of predicted D-(-)-3-hydroxybutyrate oligomer hydrolases (also known as 3HB-oligomer hydrolase), which function in the degradation of poly-3-hydroxybutyrate (PHB). These enzymes catalyse the hydrolysis of D(-)-3-hydroxybutyrate oligomers (3HB-oligomers) into 3HB-monomers [, ].; GO: 0047989 hydroxybutyrate-dimer hydrolase activity, 0019605 butyrate metabolic process, 0005615 extracellular space
Probab=59.46 E-value=8.1 Score=39.71 Aligned_cols=48 Identities=19% Similarity=0.249 Sum_probs=38.1
Q ss_pred hcC-CCcEEEEecCCCCCCChHHHHHHHHHHHHc--C--CCeEEEEcCCCCCc
Q 008873 481 HKM-KGKLLLVHGMIDENVHFRHTARLINALVAA--R--KPYEILIFPDERHM 528 (550)
Q Consensus 481 ~~i-~~P~lii~G~~D~~v~~~~~~~~~~~l~~~--~--~~~~~~~~p~~~H~ 528 (550)
.++ ..|++|+||..|.++|+.++-+-|-.+.+. | ....|..+.++.|.
T Consensus 551 g~L~GKPaIiVhGR~DaLlPvnh~Sr~Y~~ln~~~eG~~s~lrYyeV~naqHf 603 (690)
T PF10605_consen 551 GNLHGKPAIIVHGRSDALLPVNHTSRPYLGLNRQVEGRASRLRYYEVTNAQHF 603 (690)
T ss_pred CCcCCCceEEEecccceecccCCCchHHHHHhhhhcccccceeEEEecCCeec
Confidence 335 369999999999999998887777777552 3 36888889998885
No 474
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=58.05 E-value=1.7e+02 Score=29.04 Aligned_cols=57 Identities=11% Similarity=0.105 Sum_probs=34.3
Q ss_pred EEEEEECCCCceEEEEcccCCCCCCCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCc
Q 008873 60 RLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQ 124 (550)
Q Consensus 60 ~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~ 124 (550)
.|.+||+..-+....++. .-+..+..+.|||.-..++..+. ..++..+|-+.--+.+
T Consensus 296 tV~LwDlRnL~~~lh~~e-------~H~dev~~V~WSPh~etvLASSg-~D~rl~vWDls~ig~e 352 (422)
T KOG0264|consen 296 TVALWDLRNLNKPLHTFE-------GHEDEVFQVEWSPHNETVLASSG-TDRRLNVWDLSRIGEE 352 (422)
T ss_pred cEEEeechhcccCceecc-------CCCcceEEEEeCCCCCceeEecc-cCCcEEEEeccccccc
Confidence 467788886544444442 33456788999999885544433 2234556666554443
No 475
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=58.05 E-value=1.2e+02 Score=33.23 Aligned_cols=125 Identities=16% Similarity=0.167 Sum_probs=59.2
Q ss_pred EEEEEEECCCCceEE-EEcccCCCCCCCCCceeEEEEECCCCeEE-------EEEEecCCCceEEEEEECCCCceEEEEE
Q 008873 59 VRLGVVSAAGGPVSW-MDLQCGGTDQNYDEEYLARVNWMHGNILT-------AQVLNRSQTKLKVLKFDIKTGQRKVILV 130 (550)
Q Consensus 59 ~~l~~~d~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~wspDg~~i-------~~~~~r~~~~~~l~~~~~~~g~~~~l~~ 130 (550)
..||.+||+.|++.. ..+. .+. .-..+.|+.|.. +... ..+.||++|+.-...+.+..
T Consensus 504 ~~ly~mDLe~GKVV~eW~~~--------~~~--~v~~~~p~~K~aqlt~e~tflGl----s~n~lfriDpR~~~~k~v~~ 569 (794)
T PF08553_consen 504 NKLYKMDLERGKVVEEWKVH--------DDI--PVVDIAPDSKFAQLTNEQTFLGL----SDNSLFRIDPRLSGNKLVDS 569 (794)
T ss_pred CceEEEecCCCcEEEEeecC--------CCc--ceeEecccccccccCCCceEEEE----CCCceEEeccCCCCCceeec
Confidence 468999999988753 2221 111 123455654311 1111 12358999887533222211
Q ss_pred eecCceeeccCccccCCCCCccCCCcEEEEEccCCccEEEEEeCCCceeecccc--cCeEEEEEEeEeecCCEEEEEEc
Q 008873 131 EELDSWVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTCLGPITE--GDWMVEQIVGVNEASGQVYFTGT 207 (550)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~~~~~~~lT~--~~~~~~~~~~~s~dg~~l~f~~~ 207 (550)
. ...+. ..+.|+-. +.+.+|.+.+....|- |-+++.-|...+.+-. |+ .+..+ .++.||++|+.+..
T Consensus 570 ~-~k~Y~-~~~~Fs~~----aTt~~G~iavgs~~G~--IRLyd~~g~~AKT~lp~lG~-pI~~i-Dvt~DGkwilaTc~ 638 (794)
T PF08553_consen 570 Q-SKQYS-SKNNFSCF----ATTEDGYIAVGSNKGD--IRLYDRLGKRAKTALPGLGD-PIIGI-DVTADGKWILATCK 638 (794)
T ss_pred c-ccccc-cCCCceEE----EecCCceEEEEeCCCc--EEeecccchhhhhcCCCCCC-CeeEE-EecCCCcEEEEeec
Confidence 1 11111 11112211 2355666655555553 4455544433322222 33 23333 37899999987755
No 476
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=57.16 E-value=48 Score=30.90 Aligned_cols=56 Identities=9% Similarity=0.003 Sum_probs=33.4
Q ss_pred EEEEEECCCCceEEEEcccCCCCCCCCCceeEEEEECCCCeEEEEEEecCC-CceEEEEEECC
Q 008873 60 RLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQ-TKLKVLKFDIK 121 (550)
Q Consensus 60 ~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~wspDg~~i~~~~~r~~-~~~~l~~~~~~ 121 (550)
--+++|..++..-++-.. .....+...-.+||||++++..-+.-. ++.-|=++|..
T Consensus 92 f~~vfD~~~~~~pv~~~s------~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r 148 (366)
T COG3490 92 FAMVFDPNGAQEPVTLVS------QEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAR 148 (366)
T ss_pred eEEEECCCCCcCcEEEec------ccCceeecccccCCCCcEEEeecCCCCCCCceEEEEecc
Confidence 457889998755433221 233456667789999998776644332 23345555554
No 477
>PRK13615 lipoprotein LpqB; Provisional
Probab=56.75 E-value=1.2e+02 Score=31.85 Aligned_cols=35 Identities=9% Similarity=0.067 Sum_probs=23.8
Q ss_pred eeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCc
Q 008873 89 YLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQ 124 (550)
Q Consensus 89 ~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~ 124 (550)
...++.|..|+++++..... ....+++++.+.+..
T Consensus 471 ~v~sl~W~~~~~laVl~~~~-~~~~~v~~v~v~g~~ 505 (557)
T PRK13615 471 TPLDATWVDELDVATLTLAP-DGERQVELHQVGGPS 505 (557)
T ss_pred cceeeEEcCCCEEEEEeccC-CCCceEEEEECCCcc
Confidence 56778999999976655222 234567888887544
No 478
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=56.62 E-value=1.5e+02 Score=28.08 Aligned_cols=111 Identities=9% Similarity=-0.034 Sum_probs=62.8
Q ss_pred ceEEEcCCCCeEEEEEEeCCCCCeEEEeecCCCCCC------CCCcccccCCCCCC----CCCeEEEEEEECCCCceEEE
Q 008873 5 TGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVG------SEAQEDHAYPFAGA----SNVKVRLGVVSAAGGPVSWM 74 (550)
Q Consensus 5 ~~~~wSPdg~~lay~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~y~~~g~----~~~~~~l~~~d~~~~~~~~l 74 (550)
+...+++||.+|.-.+.|.+ +..+..-.-.-..++ .+.-..+..||.-. .|-+..++++++.+.-++.+
T Consensus 352 n~a~ft~dG~~iisaSsDgt-vkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQvVrsf 430 (508)
T KOG0275|consen 352 NEATFTDDGHHIISASSDGT-VKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQVVRSF 430 (508)
T ss_pred cceEEcCCCCeEEEecCCcc-EEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccceEEeee
Confidence 34568999999987655432 211111000000001 11122233455422 35556799999998877766
Q ss_pred EcccCCCCCCCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceE
Q 008873 75 DLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRK 126 (550)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~ 126 (550)
+.+ + ...+.+.+...||-|.+++-.... ..+|.....+|+..
T Consensus 431 sSG--k----REgGdFi~~~lSpkGewiYcigED----~vlYCF~~~sG~LE 472 (508)
T KOG0275|consen 431 SSG--K----REGGDFINAILSPKGEWIYCIGED----GVLYCFSVLSGKLE 472 (508)
T ss_pred ccC--C----ccCCceEEEEecCCCcEEEEEccC----cEEEEEEeecCcee
Confidence 443 2 223345667899999988766433 24888898888754
No 479
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=56.54 E-value=2.1e+02 Score=28.25 Aligned_cols=105 Identities=15% Similarity=0.058 Sum_probs=49.6
Q ss_pred cEEEEEccCCccEEEEEeCCCceeecccccCeEEEEEEeEeecCCEEEEEEcCCCCceeEEEEEEeCCCCCCCCCCCeee
Q 008873 156 GFIWASEKTGFRHLYLHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKL 235 (550)
Q Consensus 156 ~~~~~s~~~g~~~l~~~~~~~~~~~~lT~~~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~~v~~~~~g~~~~~~~~~l 235 (550)
+.+|+...+| .|+.+++++++..--... ........+++.||+.... -.|+.++.. +|. ...+...+
T Consensus 242 ~~vy~~~~~g--~l~a~d~~tG~~~W~~~~----~~~~~p~~~~~~vyv~~~~-----G~l~~~d~~-tG~-~~W~~~~~ 308 (377)
T TIGR03300 242 GQVYAVSYQG--RVAALDLRSGRVLWKRDA----SSYQGPAVDDNRLYVTDAD-----GVVVALDRR-SGS-ELWKNDEL 308 (377)
T ss_pred CEEEEEEcCC--EEEEEECCCCcEEEeecc----CCccCceEeCCEEEEECCC-----CeEEEEECC-CCc-EEEccccc
Confidence 4555555444 588888877653321110 0111122356678876432 368888873 332 00000011
Q ss_pred CCCCceEEEEECCCCCEEEEeecCCCCCCEEEEEEcCCCceeEec
Q 008873 236 TNGKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPL 280 (550)
Q Consensus 236 t~~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~~~~~l 280 (550)
. .....++.. .+..+++... -..++.++..+|+.+..+
T Consensus 309 ~-~~~~ssp~i--~g~~l~~~~~----~G~l~~~d~~tG~~~~~~ 346 (377)
T TIGR03300 309 K-YRQLTAPAV--VGGYLVVGDF----EGYLHWLSREDGSFVARL 346 (377)
T ss_pred c-CCccccCEE--ECCEEEEEeC----CCEEEEEECCCCCEEEEE
Confidence 0 011122222 3444443322 247999998888865444
No 480
>KOG4540 consensus Putative lipase essential for disintegration of autophagic bodies inside the vacuole [Intracellular trafficking, secretion, and vesicular transport; Lipid transport and metabolism]
Probab=56.34 E-value=17 Score=33.55 Aligned_cols=22 Identities=36% Similarity=0.534 Sum_probs=19.2
Q ss_pred CceEEEEechhHHHHHHHHhhC
Q 008873 412 GHIGLYGWSYGGYLSAITLARF 433 (550)
Q Consensus 412 ~~i~i~G~S~GG~~a~~~~~~~ 433 (550)
.+|-+.|||.||.+|..+..++
T Consensus 276 a~iwlTGHSLGGa~AsLlG~~f 297 (425)
T KOG4540|consen 276 ARIWLTGHSLGGAIASLLGIRF 297 (425)
T ss_pred ceEEEeccccchHHHHHhcccc
Confidence 6899999999999998877654
No 481
>COG5153 CVT17 Putative lipase essential for disintegration of autophagic bodies inside the vacuole [Intracellular trafficking and secretion / Lipid metabolism]
Probab=56.34 E-value=17 Score=33.55 Aligned_cols=22 Identities=36% Similarity=0.534 Sum_probs=19.2
Q ss_pred CceEEEEechhHHHHHHHHhhC
Q 008873 412 GHIGLYGWSYGGYLSAITLARF 433 (550)
Q Consensus 412 ~~i~i~G~S~GG~~a~~~~~~~ 433 (550)
.+|-+.|||.||.+|..+..++
T Consensus 276 a~iwlTGHSLGGa~AsLlG~~f 297 (425)
T COG5153 276 ARIWLTGHSLGGAIASLLGIRF 297 (425)
T ss_pred ceEEEeccccchHHHHHhcccc
Confidence 6899999999999998877654
No 482
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=55.80 E-value=39 Score=21.80 Aligned_cols=28 Identities=18% Similarity=0.265 Sum_probs=20.7
Q ss_pred eeEEEEECCCCeEEEEEEecCCCceEEEEEEC
Q 008873 89 YLARVNWMHGNILTAQVLNRSQTKLKVLKFDI 120 (550)
Q Consensus 89 ~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~ 120 (550)
.+..++|+|...+|+....+++ |++..+
T Consensus 13 ~v~~~~w~P~mdLiA~~t~~g~----v~v~Rl 40 (47)
T PF12894_consen 13 RVSCMSWCPTMDLIALGTEDGE----VLVYRL 40 (47)
T ss_pred cEEEEEECCCCCEEEEEECCCe----EEEEEC
Confidence 3567899999999998876543 665555
No 483
>PLN03016 sinapoylglucose-malate O-sinapoyltransferase
Probab=55.62 E-value=30 Score=35.06 Aligned_cols=144 Identities=19% Similarity=0.140 Sum_probs=79.5
Q ss_pred EEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccc---cccc------hhHhHHHH------hCCcE
Q 008873 300 IVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSW---INTV------DMRAQYLR------SKGIL 364 (550)
Q Consensus 300 ~~~~~~~~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~---~~~~------~~~~~~l~------~~G~~ 364 (550)
.+.+....+..+..|++..... ++..|+|+++-|||+.......| ++.. +.....+. .+-..
T Consensus 41 y~~v~~~~~~~lfy~f~es~~~---~~~~P~~lWlnGGPG~SS~~g~~~e~GP~~~~~~~~~~~~~~l~~n~~sW~~~an 117 (433)
T PLN03016 41 YIGIGEDENVQFFYYFIKSENN---PKEDPLLIWLNGGPGCSCLGGIIFENGPVGLKFEVFNGSAPSLFSTTYSWTKMAN 117 (433)
T ss_pred EEEecCCCCeEEEEEEEecCCC---cccCCEEEEEcCCCcHHHHHHHHHhcCCceeeccccCCCCCceeeCCCchhhcCc
Confidence 3444333456788888765443 25679999999999976532111 1100 00000111 12367
Q ss_pred EEEEC-CCCCCCCchhhHHHHhhccCC-CchHHHHHHHHH-HHHcCCCCCCceEEEEechhHHHHHHHHhh----C----
Q 008873 365 VWKLD-NRGTARRGLKFEASIKHNCGR-IDAEDQLTGAEW-LIKQGLAKVGHIGLYGWSYGGYLSAITLAR----F---- 433 (550)
Q Consensus 365 vv~~d-~rG~g~~~~~~~~~~~~~~~~-~~~~D~~~~~~~-l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~----~---- 433 (550)
++.+| +-|+|.|-..-.. ....+ .+.+|+..+++. +.+.+.....++.|.|.||||..+-.+|.. .
T Consensus 118 llfiDqPvGtGfSy~~~~~---~~~~d~~~a~~~~~fl~~f~~~~p~~~~~~~yi~GESYaG~yvP~la~~i~~~n~~~~ 194 (433)
T PLN03016 118 IIFLDQPVGSGFSYSKTPI---DKTGDISEVKRTHEFLQKWLSRHPQYFSNPLYVVGDSYSGMIVPALVQEISQGNYICC 194 (433)
T ss_pred EEEecCCCCCCccCCCCCC---CccCCHHHHHHHHHHHHHHHHhChhhcCCCEEEEccCccceehHHHHHHHHhhccccc
Confidence 89999 4466654211000 00111 123455555543 444455556789999999999866555432 1
Q ss_pred --CCeeEEEEEcCCcCCc
Q 008873 434 --PDVFQCAVSGAPVTSW 449 (550)
Q Consensus 434 --~~~~~~~v~~~~~~~~ 449 (550)
+--+++++++.|.++.
T Consensus 195 ~~~inLkGi~iGNg~t~~ 212 (433)
T PLN03016 195 EPPINLQGYMLGNPVTYM 212 (433)
T ss_pred CCcccceeeEecCCCcCc
Confidence 1247899999998764
No 484
>PLN02209 serine carboxypeptidase
Probab=55.45 E-value=32 Score=34.89 Aligned_cols=62 Identities=15% Similarity=0.066 Sum_probs=49.2
Q ss_pred CcEEEEecCCCCCCChHHHHHHHHHHHHc---------------C-----CC-eEEEEcCCCCCcCCCCCcHHHHHHHHH
Q 008873 485 GKLLLVHGMIDENVHFRHTARLINALVAA---------------R-----KP-YEILIFPDERHMPRRHRDRIYMEERIW 543 (550)
Q Consensus 485 ~P~lii~G~~D~~v~~~~~~~~~~~l~~~---------------~-----~~-~~~~~~p~~~H~~~~~~~~~~~~~~~~ 543 (550)
.++||..|..|.+|+...++++.++|.-. | .+ ..++.+-++||.. . ...+..++.+.
T Consensus 352 irVLiY~GD~D~icn~~Gte~wi~~L~w~~~~~~~~w~~~~q~aG~vk~y~n~Ltfv~V~~AGHmV-p-~qP~~al~m~~ 429 (437)
T PLN02209 352 YRSLIFSGDHDITMPFQATQAWIKSLNYSIIDDWRPWMIKGQIAGYTRTYSNKMTFATVKGGGHTA-E-YLPEESSIMFQ 429 (437)
T ss_pred ceEEEEECCccccCCcHhHHHHHHhcCCccCCCeeeeEECCEeeeEEEEeCCceEEEEEcCCCCCc-C-cCHHHHHHHHH
Confidence 68999999999999999999999888521 1 23 7778888999988 3 46777788888
Q ss_pred HHHHH
Q 008873 544 EFIER 548 (550)
Q Consensus 544 ~fl~~ 548 (550)
+|+..
T Consensus 430 ~fi~~ 434 (437)
T PLN02209 430 RWISG 434 (437)
T ss_pred HHHcC
Confidence 88753
No 485
>PF04301 DUF452: Protein of unknown function (DUF452); InterPro: IPR007398 This is a family of uncharacterised proteins.
Probab=55.25 E-value=22 Score=31.82 Aligned_cols=32 Identities=28% Similarity=0.433 Sum_probs=23.9
Q ss_pred CceEEEEechhHHHHHHHHhhCCCeeEEEEEcCC
Q 008873 412 GHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAP 445 (550)
Q Consensus 412 ~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~ 445 (550)
.+|.|++||||=.+|..++...+ ++.+++++|
T Consensus 57 ~~i~lvAWSmGVw~A~~~l~~~~--~~~aiAING 88 (213)
T PF04301_consen 57 REIYLVAWSMGVWAANRVLQGIP--FKRAIAING 88 (213)
T ss_pred ceEEEEEEeHHHHHHHHHhccCC--cceeEEEEC
Confidence 58999999999999988876543 455555444
No 486
>PF10584 Proteasome_A_N: Proteasome subunit A N-terminal signature; InterPro: IPR000426 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). This family contains the alpha subunit sequences which range from 210 to 290 amino acids. These sequences are classified as non-peptidase homologues in MEROPS peptidase family T1 (clan PB(T)). ; GO: 0004175 endopeptidase activity, 0006511 ubiquitin-dependent protein catabolic process, 0019773 proteasome core complex, alpha-subunit complex; PDB: 3H4P_M 1IRU_O 3UN4_U 1FNT_A 3OEV_G 3OEU_U 3SDK_U 3DY3_G 3MG7_G 3L5Q_C ....
Probab=55.20 E-value=4.7 Score=21.47 Aligned_cols=8 Identities=25% Similarity=0.410 Sum_probs=6.1
Q ss_pred EEcCCCCe
Q 008873 8 WWSLDSKF 15 (550)
Q Consensus 8 ~wSPdg~~ 15 (550)
.|||||+-
T Consensus 7 ~FSp~Grl 14 (23)
T PF10584_consen 7 TFSPDGRL 14 (23)
T ss_dssp SBBTTSSB
T ss_pred eECCCCeE
Confidence 38999974
No 487
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=54.93 E-value=2.4e+02 Score=28.43 Aligned_cols=19 Identities=21% Similarity=0.067 Sum_probs=13.9
Q ss_pred EEEEEEECCCCceEE-EEcc
Q 008873 59 VRLGVVSAAGGPVSW-MDLQ 77 (550)
Q Consensus 59 ~~l~~~d~~~~~~~~-l~~~ 77 (550)
.+|++||+.+.+..+ |+++
T Consensus 222 ~~l~vWD~~~r~~~Q~idLg 241 (461)
T PF05694_consen 222 HSLHVWDWSTRKLLQTIDLG 241 (461)
T ss_dssp -EEEEEETTTTEEEEEEES-
T ss_pred CeEEEEECCCCcEeeEEecC
Confidence 689999999988764 5553
No 488
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=53.74 E-value=1.9e+02 Score=27.00 Aligned_cols=134 Identities=14% Similarity=0.089 Sum_probs=70.5
Q ss_pred eEEEEEEECCCCceEEEEcccCCCCCCCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCcee
Q 008873 58 KVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWV 137 (550)
Q Consensus 58 ~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~~ 137 (550)
...|..+|-++|++.+..+++|.. .. .+.--|||...+.- .. ..|-+++.++.+.++..-..+....
T Consensus 82 ~gaiGhLdP~tGev~~ypLg~Ga~-----Ph---giv~gpdg~~Witd--~~---~aI~R~dpkt~evt~f~lp~~~a~~ 148 (353)
T COG4257 82 TGAIGHLDPATGEVETYPLGSGAS-----PH---GIVVGPDGSAWITD--TG---LAIGRLDPKTLEVTRFPLPLEHADA 148 (353)
T ss_pred cccceecCCCCCceEEEecCCCCC-----Cc---eEEECCCCCeeEec--Cc---ceeEEecCcccceEEeecccccCCC
Confidence 345777899999999888875431 12 24567898744322 11 1588889988887653321111111
Q ss_pred eccCccccCCCCCccCCCcEEEEEccCCccEEEEEeCCCceeecc--cccCeEEEEEEeEeecCCEEEEEEcCCCCceeE
Q 008873 138 NLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTCLGPI--TEGDWMVEQIVGVNEASGQVYFTGTLDGPLESH 215 (550)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~~~~~~~l--T~~~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~ 215 (550)
+. . ....++.+.+|++.+.|+.- ++|....-.+.. -.|.- -..+ ...||| .++|++-..+ .
T Consensus 149 nl-------e-t~vfD~~G~lWFt~q~G~yG--rLdPa~~~i~vfpaPqG~g-pyGi-~atpdG-svwyaslagn----a 211 (353)
T COG4257 149 NL-------E-TAVFDPWGNLWFTGQIGAYG--RLDPARNVISVFPAPQGGG-PYGI-CATPDG-SVWYASLAGN----A 211 (353)
T ss_pred cc-------c-ceeeCCCccEEEeeccccce--ecCcccCceeeeccCCCCC-Ccce-EECCCC-cEEEEecccc----c
Confidence 11 0 01346777777777766421 333322221111 11211 1123 367887 5777765443 5
Q ss_pred EEEEEe
Q 008873 216 LYCAKL 221 (550)
Q Consensus 216 l~~v~~ 221 (550)
|.++|.
T Consensus 212 iaridp 217 (353)
T COG4257 212 IARIDP 217 (353)
T ss_pred eEEccc
Confidence 667775
No 489
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=52.48 E-value=1.3e+02 Score=28.48 Aligned_cols=75 Identities=8% Similarity=0.110 Sum_probs=0.0
Q ss_pred ceEEEcCCCCeEEEEEEeCCCCCeEEEeecCCCCCCCCCcccccCCCCCCCCCeEEEEEEECCCCceEEEEcccCCCCCC
Q 008873 5 TGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQN 84 (550)
Q Consensus 5 ~~~~wSPdg~~lay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~ 84 (550)
..+..+-+|..||=.+...+- |.++|..+|+..+=--. .
T Consensus 185 acv~Ln~~Gt~vATaStkGTL-----------------------------------IRIFdt~~g~~l~E~RR------G 223 (346)
T KOG2111|consen 185 ACVALNLQGTLVATASTKGTL-----------------------------------IRIFDTEDGTLLQELRR------G 223 (346)
T ss_pred eEEEEcCCccEEEEeccCcEE-----------------------------------EEEEEcCCCcEeeeeec------C
Q ss_pred CCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCc
Q 008873 85 YDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQ 124 (550)
Q Consensus 85 ~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~ 124 (550)
-..-.+..+++|||+++++..++.+. |.+..+...+
T Consensus 224 ~d~A~iy~iaFSp~~s~LavsSdKgT----lHiF~l~~~~ 259 (346)
T KOG2111|consen 224 VDRADIYCIAFSPNSSWLAVSSDKGT----LHIFSLRDTE 259 (346)
T ss_pred CchheEEEEEeCCCccEEEEEcCCCe----EEEEEeecCC
No 490
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=52.46 E-value=53 Score=24.72 Aligned_cols=51 Identities=12% Similarity=0.030 Sum_probs=35.5
Q ss_pred ccEEEEEeCCCceeecccccCeEEEEEEeEeecCCEEEEEEcCCCCceeEEEEEEe
Q 008873 166 FRHLYLHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKL 221 (550)
Q Consensus 166 ~~~l~~~~~~~~~~~~lT~~~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~~v~~ 221 (550)
..+|+.+|+.+++.+.|-.+=+-..++. .++|++.|+++-+.. ..|.+..+
T Consensus 36 ~GRll~ydp~t~~~~vl~~~L~fpNGVa-ls~d~~~vlv~Et~~----~Ri~rywl 86 (89)
T PF03088_consen 36 TGRLLRYDPSTKETTVLLDGLYFPNGVA-LSPDESFVLVAETGR----YRILRYWL 86 (89)
T ss_dssp -EEEEEEETTTTEEEEEEEEESSEEEEE-E-TTSSEEEEEEGGG----TEEEEEES
T ss_pred CcCEEEEECCCCeEEEehhCCCccCeEE-EcCCCCEEEEEeccC----ceEEEEEE
Confidence 4689999999998888877633334454 899999998886543 45666666
No 491
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=50.98 E-value=22 Score=34.03 Aligned_cols=53 Identities=6% Similarity=0.007 Sum_probs=35.0
Q ss_pred EEEEEECCCCceEEEEcccCCCCCCCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECC
Q 008873 60 RLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIK 121 (550)
Q Consensus 60 ~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~ 121 (550)
.|.++....+..+.+-- +..-..+..+.||-|.++|+.-++.. +-.||...+.
T Consensus 295 sIRIf~~~~~~SRdiYh-------tkRMq~V~~Vk~S~Dskyi~SGSdd~--nvRlWka~As 347 (433)
T KOG0268|consen 295 SIRIFPVNHGHSRDIYH-------TKRMQHVFCVKYSMDSKYIISGSDDG--NVRLWKAKAS 347 (433)
T ss_pred eEEEeecCCCcchhhhh-------HhhhheeeEEEEeccccEEEecCCCc--ceeeeecchh
Confidence 46677777777665422 23345688899999999887655443 3457776543
No 492
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=49.57 E-value=64 Score=24.10 Aligned_cols=49 Identities=16% Similarity=0.298 Sum_probs=30.5
Q ss_pred ccEEEEEeCCCceeecccccCeEEEEEEeEeecCCEEEEEEcCCCCceeEEEEE
Q 008873 166 FRHLYLHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCA 219 (550)
Q Consensus 166 ~~~l~~~~~~~~~~~~lT~~~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~~v 219 (550)
+..+..++ +++.+.+..+-....++. .|++++.||..+.... ..++|..
T Consensus 35 ~~~Vvyyd--~~~~~~va~g~~~aNGI~-~s~~~k~lyVa~~~~~--~I~vy~~ 83 (86)
T PF01731_consen 35 WGNVVYYD--GKEVKVVASGFSFANGIA-ISPDKKYLYVASSLAH--SIHVYKR 83 (86)
T ss_pred CceEEEEe--CCEeEEeeccCCCCceEE-EcCCCCEEEEEeccCC--eEEEEEe
Confidence 35666665 445666666533334554 8999999998877544 2555544
No 493
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=49.56 E-value=2.6e+02 Score=27.20 Aligned_cols=162 Identities=10% Similarity=0.069 Sum_probs=82.0
Q ss_pred ceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCc-eEEEEEeecCceeeccCccccCCCCCccCCCc-EEEEEccCC
Q 008873 88 EYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQ-RKVILVEELDSWVNLHDCFTPLDKGVTKYSGG-FIWASEKTG 165 (550)
Q Consensus 88 ~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~g 165 (550)
..++.++.+|+..+++.--. .+..-||. ..+|+ .-.|+..++.. .. . .++.++ ++...+-+|
T Consensus 65 ~svFavsl~P~~~l~aTGGg--DD~AflW~--~~~ge~~~eltgHKDSV-t~----~-------~FshdgtlLATGdmsG 128 (399)
T KOG0296|consen 65 DSVFAVSLHPNNNLVATGGG--DDLAFLWD--ISTGEFAGELTGHKDSV-TC----C-------SFSHDGTLLATGDMSG 128 (399)
T ss_pred CceEEEEeCCCCceEEecCC--CceEEEEE--ccCCcceeEecCCCCce-EE----E-------EEccCceEEEecCCCc
Confidence 35667788886666654322 23333444 45555 23444333221 11 1 234555 665656677
Q ss_pred ccEEEEEeCCCceeecccccCeEEEEEEeEeecCCEEEEEEcCCCCceeEEEEEEeCCCCCCCCCCCeeeCCCCc-eEEE
Q 008873 166 FRHLYLHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTNGKG-KHVA 244 (550)
Q Consensus 166 ~~~l~~~~~~~~~~~~lT~~~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~~v~~~~~g~~~~~~~~~lt~~~~-~~~~ 244 (550)
.-.||.+.. ++....|-..--+.. ...|.|.+ .+++.+..++ .+|...+. .+. ..+.++...- ...-
T Consensus 129 ~v~v~~~st-g~~~~~~~~e~~die-Wl~WHp~a-~illAG~~DG----svWmw~ip-~~~----~~kv~~Gh~~~ct~G 196 (399)
T KOG0296|consen 129 KVLVFKVST-GGEQWKLDQEVEDIE-WLKWHPRA-HILLAGSTDG----SVWMWQIP-SQA----LCKVMSGHNSPCTCG 196 (399)
T ss_pred cEEEEEccc-CceEEEeecccCceE-EEEecccc-cEEEeecCCC----cEEEEECC-Ccc----eeeEecCCCCCcccc
Confidence 655666543 222333321111112 24588866 4555666554 35555551 111 2233332111 2222
Q ss_pred EECCCCCEEEEeecCCCCCCEEEEEEcCCCceeEecc
Q 008873 245 VLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLY 281 (550)
Q Consensus 245 ~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~~~~~l~ 281 (550)
-|.||||+++-.+.+ ..|.+.+.++|..+-.+.
T Consensus 197 ~f~pdGKr~~tgy~d----gti~~Wn~ktg~p~~~~~ 229 (399)
T KOG0296|consen 197 EFIPDGKRILTGYDD----GTIIVWNPKTGQPLHKIT 229 (399)
T ss_pred cccCCCceEEEEecC----ceEEEEecCCCceeEEec
Confidence 688999999877764 477788888887554444
No 494
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=48.81 E-value=3.1e+02 Score=27.99 Aligned_cols=33 Identities=30% Similarity=0.428 Sum_probs=21.2
Q ss_pred EEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEE
Q 008873 92 RVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVI 128 (550)
Q Consensus 92 ~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l 128 (550)
.++|.|||++++.. |.. ..|++++..++..+.+
T Consensus 34 ~maflPDG~llVtE--R~~--G~I~~v~~~~~~~~~~ 66 (454)
T TIGR03606 34 ALLWGPDNQLWVTE--RAT--GKILRVNPETGEVKVV 66 (454)
T ss_pred EEEEcCCCeEEEEE--ecC--CEEEEEeCCCCceeee
Confidence 46899999865443 321 2488888777665443
No 495
>PRK13615 lipoprotein LpqB; Provisional
Probab=48.43 E-value=3.5e+02 Score=28.49 Aligned_cols=159 Identities=13% Similarity=0.078 Sum_probs=82.1
Q ss_pred eEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCceeeccCccccCCCCCccCCCcEEEEEccCCccEE
Q 008873 90 LARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHL 169 (550)
Q Consensus 90 ~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l 169 (550)
..+++-|+||+.++++.. . ..| .+..-++..+.+.... . .-.| +|+.++.+|..+++...++
T Consensus 336 ~~s~avS~dg~~~A~v~~-~---~~l-~vg~~~~~~~~~~~~~--~------Lt~P-----S~d~~g~vWtv~~g~~~~l 397 (557)
T PRK13615 336 ADAATLSADGRQAAVRNA-S---GVW-SVGDGDRDAVLLDTRP--G------LVAP-----SLDAQGYVWSTPASDPRGL 397 (557)
T ss_pred cccceEcCCCceEEEEcC-C---ceE-EEecCCCcceeeccCC--c------cccC-----cCcCCCCEEEEeCCCceEE
Confidence 367899999999888843 2 124 3333334545443311 0 0112 5677778887665444444
Q ss_pred EEEeCCCceeecccccCe----EEEEEEeEeecCCEEEEEEcCCCCceeEEEEEEeCCCCCC--CC-CCCeeeCCCC-ce
Q 008873 170 YLHDINGTCLGPITEGDW----MVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNH--TL-EAPVKLTNGK-GK 241 (550)
Q Consensus 170 ~~~~~~~~~~~~lT~~~~----~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~~v~~~~~g~~--~~-~~~~~lt~~~-~~ 241 (550)
.....+| +...+. -+| .+..+. .|+||-++++.....+.....|..|-- ++.. .. ..+..+...- ..
T Consensus 398 ~~~~~~G-~~~~v~-v~~~~~~~I~~lr-vSrDG~R~Avi~~~~g~~~V~va~V~R--~~~~P~~L~~~p~~l~~~l~~v 472 (557)
T PRK13615 398 VAWGPDG-VGHPVA-VSWTATGRVVSLE-VARDGARVLVQLETGAGPQLLVASIVR--DGGVPTSLTTTPLELLASPGTP 472 (557)
T ss_pred EEecCCC-ceEEee-ccccCCCeeEEEE-eCCCccEEEEEEecCCCCEEEEEEEEe--CCCcceEeeeccEEcccCcCcc
Confidence 4443333 333332 133 345554 899999999987755543334433433 3330 11 1222332211 23
Q ss_pred EEEEECCCCCEEEEeecCCCCCCEEEEEEcC
Q 008873 242 HVAVLDHNMRNFVDFHDSLDSPPRILLCSLQ 272 (550)
Q Consensus 242 ~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~ 272 (550)
.+.+|..+++..++. .....-..++++.+.
T Consensus 473 ~sl~W~~~~~laVl~-~~~~~~~~v~~v~v~ 502 (557)
T PRK13615 473 LDATWVDELDVATLT-LAPDGERQVELHQVG 502 (557)
T ss_pred eeeEEcCCCEEEEEe-ccCCCCceEEEEECC
Confidence 445787777644444 333343567888874
No 496
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=47.30 E-value=3e+02 Score=27.31 Aligned_cols=64 Identities=19% Similarity=0.249 Sum_probs=40.3
Q ss_pred cEEEEEccCCccEEEEEeCCCceeecccccCeE-EEEEEeEeecCCE--EEEEEcCCC-CceeEEEEEEe
Q 008873 156 GFIWASEKTGFRHLYLHDINGTCLGPITEGDWM-VEQIVGVNEASGQ--VYFTGTLDG-PLESHLYCAKL 221 (550)
Q Consensus 156 ~~~~~s~~~g~~~l~~~~~~~~~~~~lT~~~~~-~~~~~~~s~dg~~--l~f~~~~~~-~~~~~l~~v~~ 221 (550)
.+++.+++.+ -|++++++|++...++.|..+ |.-...+.-.|+. |+..+++.. .....+|+++.
T Consensus 69 SlIigTdK~~--GL~VYdL~Gk~lq~~~~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~ 136 (381)
T PF02333_consen 69 SLIIGTDKKG--GLYVYDLDGKELQSLPVGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDP 136 (381)
T ss_dssp -EEEEEETTT--EEEEEETTS-EEEEE-SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEET
T ss_pred ceEEEEeCCC--CEEEEcCCCcEEEeecCCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecC
Confidence 3777787754 699999999999999888665 3322345567766 456666542 23478998885
No 497
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=47.22 E-value=87 Score=33.72 Aligned_cols=51 Identities=10% Similarity=0.005 Sum_probs=33.1
Q ss_pred EEEEEEECCCCceEEEEcccCCCCCCCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCC
Q 008873 59 VRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKT 122 (550)
Q Consensus 59 ~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~ 122 (550)
..|.+|-+++++.+-|. .-...+..+.||||+.....+.... +|.++.+.+
T Consensus 273 ~VLv~Wq~~T~~kqfLP---------RLgs~I~~i~vS~ds~~~sl~~~DN----qI~li~~~d 323 (792)
T KOG1963|consen 273 GVLVLWQLETGKKQFLP---------RLGSPILHIVVSPDSDLYSLVLEDN----QIHLIKASD 323 (792)
T ss_pred eEEEEEeecCCCccccc---------ccCCeeEEEEEcCCCCeEEEEecCc----eEEEEeccc
Confidence 45778888988843331 1133567789999999777766543 466665543
No 498
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=46.70 E-value=3.1e+02 Score=27.30 Aligned_cols=148 Identities=12% Similarity=0.072 Sum_probs=74.7
Q ss_pred EEEEEEeEeecCCEEEEEEcCCCCceeEEEEEEeCCCCCCCCCCCeeeC--CCCceEEEEECCCCCEEEEeecCCCCCCE
Q 008873 188 MVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLT--NGKGKHVAVLDHNMRNFVDFHDSLDSPPR 265 (550)
Q Consensus 188 ~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~~v~~~~~g~~~~~~~~~lt--~~~~~~~~~~s~dg~~l~~~~s~~~~p~~ 265 (550)
.|.+. .|.+-.+.++-+...++ .|...|+..+.. ++.... .....+.+.|.|-+..++.+.+.- ..
T Consensus 229 ~VeDV-~~h~~h~~lF~sv~dd~----~L~iwD~R~~~~----~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D---~t 296 (422)
T KOG0264|consen 229 VVEDV-AWHPLHEDLFGSVGDDG----KLMIWDTRSNTS----KPSHSVKAHSAEVNCVAFNPFNEFILATGSAD---KT 296 (422)
T ss_pred ceehh-hccccchhhheeecCCC----eEEEEEcCCCCC----CCcccccccCCceeEEEeCCCCCceEEeccCC---Cc
Confidence 34444 48888777776666554 455556631111 121111 123477789999888888776643 36
Q ss_pred EEEEEcCCCceeEeccCCCCChhhhhcCCCCC-CeEEEEEcCCCcEEEEEEEcCCCCC----CCCCCceEEEEEcCCCCc
Q 008873 266 ILLCSLQDGSLVLPLYEQPLTVPRIKRLQLEP-PDIVQIQANDGTVLYGALYKPDESR----YGPPPYKTLISVYGGPCV 340 (550)
Q Consensus 266 l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~l~~~~~~P~~~~----~~~~~~P~vv~~hGg~~~ 340 (550)
+.+.|+++-+. .+..-......+-...+.+ .+.+--.+..+..+..|-+.--+.. ..+..-|=++|+|||-..
T Consensus 297 V~LwDlRnL~~--~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~ 374 (422)
T KOG0264|consen 297 VALWDLRNLNK--PLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTA 374 (422)
T ss_pred EEEeechhccc--CceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCccc
Confidence 77778754432 1111111222333333322 2333333333344666655432221 111334789999998555
Q ss_pred eeecccccc
Q 008873 341 QLVCDSWIN 349 (550)
Q Consensus 341 ~~~~~~~~~ 349 (550)
....-.|.+
T Consensus 375 kV~DfsWnp 383 (422)
T KOG0264|consen 375 KVSDFSWNP 383 (422)
T ss_pred ccccccCCC
Confidence 433334544
No 499
>PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function.
Probab=46.56 E-value=1.2e+02 Score=31.74 Aligned_cols=39 Identities=3% Similarity=-0.093 Sum_probs=27.7
Q ss_pred EEEEECCCCceEEEEcccCCCCCCCCCceeEEEEECCCCeEEEEEE
Q 008873 61 LGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVL 106 (550)
Q Consensus 61 l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~wspDg~~i~~~~ 106 (550)
++..+..+++.+++... +..--++.+.|+|||+.|+...
T Consensus 482 ~~~~~~~~g~~~rf~~~-------P~gaE~tG~~fspDg~tlFvni 520 (524)
T PF05787_consen 482 VWAYDPDTGELKRFLVG-------PNGAEITGPCFSPDGRTLFVNI 520 (524)
T ss_pred eeeccccccceeeeccC-------CCCcccccceECCCCCEEEEEE
Confidence 66778888888877542 3334567899999999765543
No 500
>PF06441 EHN: Epoxide hydrolase N terminus; InterPro: IPR010497 This entry represents the N-terminal region of the eukaryotic epoxide hydrolase protein. Epoxide hydrolases (3.3.2.3 from EC) comprise a group of functionally related enzymes that catalyse the addition of water to oxirane compounds (epoxides), thereby usually generating vicinal trans-diols. EHs have been found in all types of living organisms, including mammals, invertebrates, plants, fungi and bacteria. In animals, the major interest in EH is directed towards their detoxification capacity for epoxides since they are important safeguards against the cytotoxic and genotoxic potential of oxirane derivatives that are often reactive electrophiles because of the high tension of the three-membered ring system and the strong polarisation of the C--O bonds. This is of significant relevance because epoxides are frequent intermediary metabolites, which arise during the biotransformation of foreign compounds []. This domain is often found in conjunction with IPR000073 from INTERPRO.; GO: 0004301 epoxide hydrolase activity, 0009636 response to toxin, 0016020 membrane; PDB: 3G0I_B 3G02_A 1QO7_A.
Probab=45.69 E-value=49 Score=26.17 Aligned_cols=39 Identities=13% Similarity=0.075 Sum_probs=19.8
Q ss_pred CCCeEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCc
Q 008873 296 EPPDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCV 340 (550)
Q Consensus 296 ~~~~~~~~~~~~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~ 340 (550)
.....+..+. +|..|+....++... .. ..||++||-|++
T Consensus 66 N~~phf~t~I-~g~~iHFih~rs~~~----~a-iPLll~HGWPgS 104 (112)
T PF06441_consen 66 NSFPHFKTEI-DGLDIHFIHVRSKRP----NA-IPLLLLHGWPGS 104 (112)
T ss_dssp TTS-EEEEEE-TTEEEEEEEE--S-T----T--EEEEEE--SS--
T ss_pred HcCCCeeEEE-eeEEEEEEEeeCCCC----CC-eEEEEECCCCcc
Confidence 3444555554 689999998887553 23 445669999887
Done!