Query 008874
Match_columns 550
No_of_seqs 252 out of 901
Neff 3.5
Searched_HMMs 46136
Date Thu Mar 28 17:40:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008874.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008874hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd00083 HLH Helix-loop-helix d 99.3 2.5E-12 5.4E-17 99.1 4.8 53 373-426 5-60 (60)
2 smart00353 HLH helix loop heli 99.2 1.4E-11 3E-16 93.6 6.2 49 377-426 1-52 (53)
3 PF00010 HLH: Helix-loop-helix 99.2 1.7E-11 3.7E-16 94.6 5.0 49 374-422 3-55 (55)
4 KOG1318 Helix loop helix trans 99.2 2E-11 4.2E-16 128.9 6.5 86 368-453 229-323 (411)
5 KOG1319 bHLHZip transcription 98.9 1E-09 2.3E-14 106.3 4.0 65 375-439 65-135 (229)
6 KOG4304 Transcriptional repres 98.2 7.2E-07 1.6E-11 89.6 2.5 52 375-426 35-93 (250)
7 KOG3561 Aryl-hydrocarbon recep 98.0 4.1E-06 8.9E-11 95.2 4.9 52 373-424 21-75 (803)
8 KOG2588 Predicted DNA-binding 97.7 2.9E-05 6.2E-10 89.3 5.2 66 371-436 275-340 (953)
9 KOG2483 Upstream transcription 97.6 0.0001 2.3E-09 73.7 6.4 58 373-430 60-119 (232)
10 KOG3960 Myogenic helix-loop-he 97.5 0.0002 4.3E-09 72.7 6.4 57 376-432 122-179 (284)
11 PLN03217 transcription factor 97.2 0.00091 2E-08 58.6 6.5 58 381-439 16-79 (93)
12 KOG0561 bHLH transcription fac 97.2 0.00033 7.2E-09 72.7 4.3 49 376-425 64-114 (373)
13 KOG4029 Transcription factor H 96.5 0.0024 5.2E-08 62.7 3.9 57 376-432 113-172 (228)
14 KOG3910 Helix loop helix trans 96.4 0.0065 1.4E-07 66.8 6.9 54 375-428 529-585 (632)
15 KOG4447 Transcription factor T 86.1 0.41 8.9E-06 46.3 1.7 48 374-422 80-129 (173)
16 KOG3558 Hypoxia-inducible fact 80.6 0.97 2.1E-05 52.1 2.1 43 376-419 50-96 (768)
17 KOG3560 Aryl-hydrocarbon recep 74.5 2.4 5.2E-05 48.0 2.9 40 380-420 33-76 (712)
18 KOG3898 Transcription factor N 67.4 6.5 0.00014 40.2 4.0 47 376-423 76-125 (254)
19 KOG3559 Transcriptional regula 66.0 4.8 0.0001 44.5 2.8 45 378-422 7-54 (598)
20 KOG4395 Transcription factor A 51.2 22 0.00048 37.2 4.5 58 365-425 170-229 (285)
21 PF13334 DUF4094: Domain of un 36.2 59 0.0013 29.0 4.3 26 411-436 68-93 (95)
22 KOG3582 Mlx interactors and re 32.0 19 0.00041 42.2 0.7 59 374-432 653-715 (856)
23 COG3074 Uncharacterized protei 28.8 72 0.0016 27.8 3.5 27 411-437 13-39 (79)
24 KOG1352 Vacuolar H+-ATPase V1 28.0 30 0.00065 38.7 1.3 24 142-165 365-399 (618)
25 KOG4447 Transcription factor T 26.0 53 0.0012 32.3 2.5 44 379-423 29-74 (173)
26 KOG0709 CREB/ATF family transc 25.6 54 0.0012 36.8 2.8 42 360-404 246-287 (472)
27 KOG3582 Mlx interactors and re 23.7 27 0.00059 41.0 0.1 56 374-432 789-848 (856)
28 PF06005 DUF904: Protein of un 21.7 1.2E+02 0.0027 25.8 3.6 26 411-436 13-38 (72)
29 PRK15422 septal ring assembly 20.6 1.1E+02 0.0023 27.1 3.0 29 410-438 12-40 (79)
No 1
>cd00083 HLH Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, dimerization creates a parallel, left-handed, four helix bundle; the basic region N-terminal to the first amphipathic helix mediates high-affinity DNA-binding; there are several groups of HLH proteins: those (E12/E47) which bind specific hexanucleotide sequences such as E-box (5-CANNTG-3) or StRE 5-ATCACCCCAC-3), those lacking the basic domain (Emc, Id) function as negative regulators since they fail to bind DNA, those (hairy, E(spl), deadpan) which repress transcription although they can bind specific hexanucleotide sequences such as N-box (5-CACGc/aG-3), those which have a COE domain (Collier/Olf-1/EBF) which is involved in both in dimerization and in DNA binding, and those which bind pentanucleotides ACGTG or GCGTG and
Probab=99.30 E-value=2.5e-12 Score=99.11 Aligned_cols=53 Identities=36% Similarity=0.615 Sum_probs=48.5
Q ss_pred cccccHHHHHHHHHHHHHHHHhhccCCCC---CCCCCchhhHHHHHHHHHHHHHHHH
Q 008874 373 TNSHSLAERVRREKISERMKFLQDLVPGC---SKVTGKAVMLDEIINYVQSLQRQVE 426 (550)
Q Consensus 373 t~~HslaERrRReKINerf~aLq~LVP~~---~K~tDKASILdeAI~YIK~LQ~QVe 426 (550)
...|+..||+||++||+.|..|+.+||.+ .| .+|++||+.||+||+.|+.+++
T Consensus 5 r~~~~~~Er~RR~~~n~~~~~L~~llp~~~~~~k-~~k~~iL~~a~~yI~~L~~~~~ 60 (60)
T cd00083 5 REAHNLRERRRRERINDAFDELRSLLPTLPPSKK-LSKAEILRKAVDYIKSLQELLQ 60 (60)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHCCCCCCCCC-CCHHHHHHHHHHHHHHHHHHhC
Confidence 35799999999999999999999999999 55 4999999999999999999863
No 2
>smart00353 HLH helix loop helix domain.
Probab=99.24 E-value=1.4e-11 Score=93.59 Aligned_cols=49 Identities=39% Similarity=0.576 Sum_probs=44.6
Q ss_pred cHHHHHHHHHHHHHHHHhhccCCC---CCCCCCchhhHHHHHHHHHHHHHHHH
Q 008874 377 SLAERVRREKISERMKFLQDLVPG---CSKVTGKAVMLDEIINYVQSLQRQVE 426 (550)
Q Consensus 377 slaERrRReKINerf~aLq~LVP~---~~K~tDKASILdeAI~YIK~LQ~QVe 426 (550)
+..||+||++||+.|..|+.|||. ..+. +|++||++||+||+.|+.+++
T Consensus 1 n~~Er~RR~~~n~~~~~L~~lip~~~~~~k~-~k~~iL~~ai~yi~~L~~~~~ 52 (53)
T smart00353 1 NARERRRRRKINEAFDELRSLLPTLPNNKKL-SKAEILRLAIEYIKSLQEELQ 52 (53)
T ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC-CHHHHHHHHHHHHHHHHHHHh
Confidence 468999999999999999999996 4465 999999999999999999986
No 3
>PF00010 HLH: Helix-loop-helix DNA-binding domain only nuclear translocator protein (Arnt).; InterPro: IPR011598 The helix-loop-helix (HLH) DNA-binding domain consists of a closed bundle of four helices in a left-handed twist with two crossover connections. The HLH domain directs dimerisation, and is juxtaposed to basic regions to create a DNA interaction interface surface that recognises specific DNA sequences. Basic region/HLH (bHLH) proteins regulate diverse biological pathways []. bHLH proteins include MyoD [], SREBPs (sterol regulatory element binding proteins) [], and yeast Pho4 (phosphatase system) []. In certain proteins the bHLH domain contains a leucine-zipper motif. The bHLH/leucine zipper (bHLHZip) domain specifies dimerisation within a network of proteins and determines sequence-specific DNA binding []. bHLHZip domains occur in the transcription factors Myc, Mad, Max and Usf [, ]. This entry is bHLHZip, which covers the bHLH domain and the leucine zipper motif, when present.; PDB: 1NLW_A 1NKP_D 1A93_A 2A93_A 1AM9_C 3U5V_A 1A0A_B 2QL2_C 1UKL_C 1AN4_B ....
Probab=99.20 E-value=1.7e-11 Score=94.65 Aligned_cols=49 Identities=37% Similarity=0.699 Sum_probs=44.6
Q ss_pred ccccHHHHHHHHHHHHHHHHhhccCCCC----CCCCCchhhHHHHHHHHHHHH
Q 008874 374 NSHSLAERVRREKISERMKFLQDLVPGC----SKVTGKAVMLDEIINYVQSLQ 422 (550)
Q Consensus 374 ~~HslaERrRReKINerf~aLq~LVP~~----~K~tDKASILdeAI~YIK~LQ 422 (550)
..|+..||+||++||+.|..|+.|||.+ ....+|++||+.||+||+.||
T Consensus 3 ~~h~~~Er~RR~~i~~~~~~L~~llp~~~~~~~~k~~K~~iL~~ai~yI~~Lq 55 (55)
T PF00010_consen 3 QKHNERERRRRDRINDCFDELRELLPSCSAGSSRKLSKASILQKAIDYIKQLQ 55 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCSSHHCCTTSSSSHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhccchhccccccCCHHHHHHHHHHHHHHhC
Confidence 3699999999999999999999999987 233599999999999999997
No 4
>KOG1318 consensus Helix loop helix transcription factor EB [Transcription]
Probab=99.19 E-value=2e-11 Score=128.91 Aligned_cols=86 Identities=31% Similarity=0.521 Sum_probs=63.1
Q ss_pred ccccccccccHHHHHHHHHHHHHHHHhhccCCCCCC---CCCchhhHHHHHHHHHHHHHHHHHH------HhhhhhcCCC
Q 008874 368 RRGQATNSHSLAERVRREKISERMKFLQDLVPGCSK---VTGKAVMLDEIINYVQSLQRQVEFL------SMKLATVNPR 438 (550)
Q Consensus 368 rR~qAt~~HslaERrRReKINerf~aLq~LVP~~~K---~tDKASILdeAI~YIK~LQ~QVe~L------e~k~aavnp~ 438 (550)
|-+++++.|+++|||||++||++|++|..|||.|+- .++|.+||..+++||+.||+..+.. +.+++..+.+
T Consensus 229 rdr~Krd~HNeVERRRR~nIN~~IkeLg~liP~~~~~~~~~nKgtILk~s~dYIr~Lqq~~q~~~E~~~rqk~le~~n~~ 308 (411)
T KOG1318|consen 229 RDRRKRDNHNEVERRRRENINDRIKELGQLIPKCNSEDMKSNKGTILKASCDYIRELQQTLQRARELENRQKKLESTNQE 308 (411)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHhCCCCCcchhhcccchhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHhHHHH
Confidence 334455699999999999999999999999999943 2379999999999999999765532 2334444555
Q ss_pred ccchhhhhhhHHhhh
Q 008874 439 LDFNIEELLAKDVLQ 453 (550)
Q Consensus 439 l~~~i~~L~~kd~~q 453 (550)
|-..++.|......+
T Consensus 309 L~~rieeLk~~~~~~ 323 (411)
T KOG1318|consen 309 LALRIEELKSEAGRH 323 (411)
T ss_pred HHHHHHHHHHHHHHh
Confidence 555556654444333
No 5
>KOG1319 consensus bHLHZip transcription factor BIGMAX [Transcription]
Probab=98.89 E-value=1e-09 Score=106.30 Aligned_cols=65 Identities=31% Similarity=0.518 Sum_probs=59.2
Q ss_pred cccHHHHHHHHHHHHHHHHhhccCCCCCCC------CCchhhHHHHHHHHHHHHHHHHHHHhhhhhcCCCc
Q 008874 375 SHSLAERVRREKISERMKFLQDLVPGCSKV------TGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPRL 439 (550)
Q Consensus 375 ~HslaERrRReKINerf~aLq~LVP~~~K~------tDKASILdeAI~YIK~LQ~QVe~Le~k~aavnp~l 439 (550)
.|..+||+||+.|+..+..|++|||.|... +.||.||..+|+||.+|..++.+.+.++++++.++
T Consensus 65 aHtqaEqkRRdAIk~GYddLq~LvP~cq~~ds~g~KlskA~ILqksidyi~~L~~~k~kqe~e~s~L~k~v 135 (229)
T KOG1319|consen 65 AHTQAEQKRRDAIKRGYDDLQTLVPTCQQQDSIGQKLSKAIILQKTIDYIQFLHKEKKKQEEEVSTLRKDV 135 (229)
T ss_pred HHHHHHHHHHHHHHhchHHHHHhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 499999999999999999999999987542 26999999999999999999999999999998875
No 6
>KOG4304 consensus Transcriptional repressors of the hairy/E(spl) family (contains HLH) [Transcription]
Probab=98.19 E-value=7.2e-07 Score=89.57 Aligned_cols=52 Identities=33% Similarity=0.470 Sum_probs=45.7
Q ss_pred cccHHHHHHHHHHHHHHHHhhccCCCCCCC-------CCchhhHHHHHHHHHHHHHHHH
Q 008874 375 SHSLAERVRREKISERMKFLQDLVPGCSKV-------TGKAVMLDEIINYVQSLQRQVE 426 (550)
Q Consensus 375 ~HslaERrRReKINerf~aLq~LVP~~~K~-------tDKASILdeAI~YIK~LQ~QVe 426 (550)
.|-+.|||||.|||+-+.+|++|||.+.|+ .+||.||+-|++|++.||.+..
T Consensus 35 ~Kpl~EKkRRaRIN~~L~eLK~Li~e~~~~~~~~~sklEKAdILEltV~hL~~l~~~~~ 93 (250)
T KOG4304|consen 35 RKPLLEKKRRARINRCLDELKDLIPEALKKDGQRHSKLEKADILELTVNHLRQLQRSQQ 93 (250)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHhcccc
Confidence 588999999999999999999999966443 2799999999999999997544
No 7
>KOG3561 consensus Aryl-hydrocarbon receptor nuclear translocator [Transcription]
Probab=98.04 E-value=4.1e-06 Score=95.24 Aligned_cols=52 Identities=19% Similarity=0.371 Sum_probs=47.4
Q ss_pred cccccHHHHHHHHHHHHHHHHhhccCCCCC---CCCCchhhHHHHHHHHHHHHHH
Q 008874 373 TNSHSLAERVRREKISERMKFLQDLVPGCS---KVTGKAVMLDEIINYVQSLQRQ 424 (550)
Q Consensus 373 t~~HslaERrRReKINerf~aLq~LVP~~~---K~tDKASILdeAI~YIK~LQ~Q 424 (550)
...|+.+|||||+++|..|.+|.+|||.|. .+.||.+||.+||..||.++++
T Consensus 21 Re~~~~~EKrRRdq~N~yI~ELs~Mvp~~~~~~RK~DK~tVLr~aV~~lr~~k~~ 75 (803)
T KOG3561|consen 21 RENRSEIEKRRRDQMNKYIEELSEMVPTNASLSRKPDKLTVLRMAVDHLRLIKEQ 75 (803)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHhhhcchhcccCchHHHHHHHHHHHHHHHhhh
Confidence 458999999999999999999999999997 3349999999999999998875
No 8
>KOG2588 consensus Predicted DNA-binding protein [Transcription]
Probab=97.74 E-value=2.9e-05 Score=89.26 Aligned_cols=66 Identities=27% Similarity=0.481 Sum_probs=55.7
Q ss_pred cccccccHHHHHHHHHHHHHHHHhhccCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHhhhhhcC
Q 008874 371 QATNSHSLAERVRREKISERMKFLQDLVPGCSKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATVN 436 (550)
Q Consensus 371 qAt~~HslaERrRReKINerf~aLq~LVP~~~K~tDKASILdeAI~YIK~LQ~QVe~Le~k~aavn 436 (550)
..+..|+++|||-|-.||+||.+|++|||+..-+..|..+|..||+||++||...+.+....+.+.
T Consensus 275 ~kRtAHN~IEKRYRsSINDKI~eLk~lV~g~~aKl~kSavLr~ai~~i~dl~~~nq~lk~~~~~l~ 340 (953)
T KOG2588|consen 275 EKRTAHNIIEKRYRSSINDKIIELKDLVPGTEAKLNKSAVLRKAIDYIEDLQGYNQKLKLENASLR 340 (953)
T ss_pred cccchhhHHHHHhhcchhHHHHHHHHhcCccHhhhhhhhhHHHHHHHHHHhhccccccchhhhhhh
Confidence 335679999999999999999999999998765558999999999999999987777665554433
No 9
>KOG2483 consensus Upstream transcription factor 2/L-myc-2 protein [Transcription]
Probab=97.61 E-value=0.0001 Score=73.74 Aligned_cols=58 Identities=26% Similarity=0.342 Sum_probs=47.7
Q ss_pred cccccHHHHHHHHHHHHHHHHhhccCCCCCCCC--CchhhHHHHHHHHHHHHHHHHHHHh
Q 008874 373 TNSHSLAERVRREKISERMKFLQDLVPGCSKVT--GKAVMLDEIINYVQSLQRQVEFLSM 430 (550)
Q Consensus 373 t~~HslaERrRReKINerf~aLq~LVP~~~K~t--DKASILdeAI~YIK~LQ~QVe~Le~ 430 (550)
+..|+.-||+||..|.+.|..|+.+||....-+ ..++||+.|++||+.|+.+....+.
T Consensus 60 R~~HN~LEk~RRahlk~~~~~Lk~~vP~~~~~~~~t~lsiL~kA~~~i~~l~~~~~~~~~ 119 (232)
T KOG2483|consen 60 RAHHNALEKRRRAHLKDCFESLKDSVPLLNGETRSTTLSILDKALEHIQSLERKSATQQQ 119 (232)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHhCCCCCCcchhhhhHhhhhHHHHHHHHHhHHHHHHH
Confidence 357999999999999999999999999654322 2589999999999999876554443
No 10
>KOG3960 consensus Myogenic helix-loop-helix transcription factor [Transcription]
Probab=97.48 E-value=0.0002 Score=72.73 Aligned_cols=57 Identities=21% Similarity=0.261 Sum_probs=49.0
Q ss_pred ccHHHHHHHHHHHHHHHHhhc-cCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHhhh
Q 008874 376 HSLAERVRREKISERMKFLQD-LVPGCSKVTGKAVMLDEIINYVQSLQRQVEFLSMKL 432 (550)
Q Consensus 376 HslaERrRReKINerf~aLq~-LVP~~~K~tDKASILdeAI~YIK~LQ~QVe~Le~k~ 432 (550)
--+.||||=.|+||.|.+|++ -+++-+...-|.-||..||+||..||.-++.+....
T Consensus 122 ATMRERRRLkKVNEAFE~LKRrT~~NPNQRLPKVEILRsAI~YIE~Lq~LL~~~~~~~ 179 (284)
T KOG3960|consen 122 ATMRERRRLKKVNEAFETLKRRTSSNPNQRLPKVEILRSAIRYIERLQALLQEQDQAE 179 (284)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCccccccHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 348899999999999999987 667777766899999999999999999888776543
No 11
>PLN03217 transcription factor ATBS1; Provisional
Probab=97.21 E-value=0.00091 Score=58.58 Aligned_cols=58 Identities=31% Similarity=0.506 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHhhccCCCC------CCCCCchhhHHHHHHHHHHHHHHHHHHHhhhhhcCCCc
Q 008874 381 RVRREKISERMKFLQDLVPGC------SKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPRL 439 (550)
Q Consensus 381 RrRReKINerf~aLq~LVP~~------~K~tDKASILdeAI~YIK~LQ~QVe~Le~k~aavnp~l 439 (550)
|---+.|+|-+..||.|+|.. .|+ .-+-+|.||.+||+.|+++|..|+++++.+-...
T Consensus 16 risddqi~dLvsKLq~llPe~r~~r~s~k~-saskvLqEtC~YIrsLhrEvDdLSerLs~LL~t~ 79 (93)
T PLN03217 16 RISEDQINDLIIKLQQLLPELRDSRRSDKV-SAARVLQDTCNYIRNLHREVDDLSERLSELLANS 79 (93)
T ss_pred CCCHHHHHHHHHHHHHHChHHHhhhccccc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 334578999999999999954 333 5677899999999999999999999988654333
No 12
>KOG0561 consensus bHLH transcription factor [Transcription]
Probab=97.20 E-value=0.00033 Score=72.75 Aligned_cols=49 Identities=27% Similarity=0.452 Sum_probs=43.7
Q ss_pred ccHHHHHHHHHHHHHHHHhhccCCC--CCCCCCchhhHHHHHHHHHHHHHHH
Q 008874 376 HSLAERVRREKISERMKFLQDLVPG--CSKVTGKAVMLDEIINYVQSLQRQV 425 (550)
Q Consensus 376 HslaERrRReKINerf~aLq~LVP~--~~K~tDKASILdeAI~YIK~LQ~QV 425 (550)
-+-.||||=.-||..|..|+.|+|. ..|+ .||.||+.+.+||..|+.+.
T Consensus 64 ANsNERRRMQSINAGFqsLr~LlPr~eGEKL-SKAAILQQTa~yI~~Le~~K 114 (373)
T KOG0561|consen 64 ANSNERRRMQSINAGFQSLRALLPRKEGEKL-SKAAILQQTADYIHQLEGHK 114 (373)
T ss_pred hcchHHHHHHhhhHHHHHHHHhcCcccchhh-HHHHHHHHHHHHHHHHHhcc
Confidence 4667999999999999999999996 4676 89999999999999998644
No 13
>KOG4029 consensus Transcription factor HAND2/Transcription factor TAL1/TAL2/LYL1 [Transcription]
Probab=96.50 E-value=0.0024 Score=62.71 Aligned_cols=57 Identities=23% Similarity=0.276 Sum_probs=48.5
Q ss_pred ccHHHHHHHHHHHHHHHHhhccCCCC---CCCCCchhhHHHHHHHHHHHHHHHHHHHhhh
Q 008874 376 HSLAERVRREKISERMKFLQDLVPGC---SKVTGKAVMLDEIINYVQSLQRQVEFLSMKL 432 (550)
Q Consensus 376 HslaERrRReKINerf~aLq~LVP~~---~K~tDKASILdeAI~YIK~LQ~QVe~Le~k~ 432 (550)
++..||.|=.-+|..|..||.+||.- .|+..|..+|..||.||++|+.-++.-+..+
T Consensus 113 ~n~RER~Rv~~vN~~f~~Lr~~lP~~~~~~kklSKveTLr~A~~YI~~L~~lL~~~~~~~ 172 (228)
T KOG4029|consen 113 RNARERQRVQSVNSAFAELRALLPTEPPQSKKLSKVETLRLATSYIRYLTKLLATQEAPL 172 (228)
T ss_pred hhhhhhhcccchhhhhHHHHhcCCCCCCcccccCcccchHHHHHHHHHHHHHhcccccCC
Confidence 56679999999999999999999842 4445899999999999999998887766544
No 14
>KOG3910 consensus Helix loop helix transcription factor [Transcription]
Probab=96.42 E-value=0.0065 Score=66.76 Aligned_cols=54 Identities=26% Similarity=0.306 Sum_probs=45.8
Q ss_pred cccHHHHHHHHHHHHHHHHhhccCC---CCCCCCCchhhHHHHHHHHHHHHHHHHHH
Q 008874 375 SHSLAERVRREKISERMKFLQDLVP---GCSKVTGKAVMLDEIINYVQSLQRQVEFL 428 (550)
Q Consensus 375 ~HslaERrRReKINerf~aLq~LVP---~~~K~tDKASILdeAI~YIK~LQ~QVe~L 428 (550)
..+..||.|=..|||.|++|.++.= ...|..-|..||..|+.-|-.|++||++-
T Consensus 529 aNNARERlRVRDINeAfKELGRMCqlHlkSeKpQTKLgILhqAVsVIlsLEQQVRER 585 (632)
T KOG3910|consen 529 ANNARERLRVRDINEAFKELGRMCQLHLKSEKPQTKLGILHQAVSVILSLEQQVRER 585 (632)
T ss_pred hhhhhhheehhhHHHHHHHHHHHHHHhhcccCcchhhhHHHHHHHHHHHHHHHHHHc
Confidence 4788999999999999999999864 23343358899999999999999999873
No 15
>KOG4447 consensus Transcription factor TWIST [Transcription]
Probab=86.13 E-value=0.41 Score=46.34 Aligned_cols=48 Identities=23% Similarity=0.357 Sum_probs=40.1
Q ss_pred ccccHHHHHHHHHHHHHHHHhhccCCCC--CCCCCchhhHHHHHHHHHHHH
Q 008874 374 NSHSLAERVRREKISERMKFLQDLVPGC--SKVTGKAVMLDEIINYVQSLQ 422 (550)
Q Consensus 374 ~~HslaERrRReKINerf~aLq~LVP~~--~K~tDKASILdeAI~YIK~LQ 422 (550)
-.|++.||+|-..+|+.|..||.++|.. .|. .|---|.-|-.||-+|=
T Consensus 80 v~anvrerqRtqsLn~AF~~lr~iiptlPsdkl-SkiqtLklA~ryidfl~ 129 (173)
T KOG4447|consen 80 VMANVRERQRTQSLNEAFAALRKIIPTLPSDKL-SKIQTLKLAARYIDFLY 129 (173)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHhhcCCCCcccc-ccccchhhcccCCchhh
Confidence 3699999999999999999999999964 555 67677888888887764
No 16
>KOG3558 consensus Hypoxia-inducible factor 1/Neuronal PAS domain protein NPAS1 [Signal transduction mechanisms; Transcription]
Probab=80.59 E-value=0.97 Score=52.05 Aligned_cols=43 Identities=33% Similarity=0.384 Sum_probs=36.8
Q ss_pred ccHHHHHHHHHHHHHHHHhhccCCCC----CCCCCchhhHHHHHHHHH
Q 008874 376 HSLAERVRREKISERMKFLQDLVPGC----SKVTGKAVMLDEIINYVQ 419 (550)
Q Consensus 376 HslaERrRReKINerf~aLq~LVP~~----~K~tDKASILdeAI~YIK 419 (550)
-.-|.|.||.|=|+-|.+|..++|-- ..+ |||+|+.-||-|++
T Consensus 50 SRdAARsRRsKEn~~FyeLa~~lPlp~aisshL-DkaSimRLtISyLR 96 (768)
T KOG3558|consen 50 SRDAARSRRSKENEEFYELAKLLPLPAAISSHL-DKASIMRLTISYLR 96 (768)
T ss_pred hhhhhhhhcccchHHHHHHHHhCCCcchhhhhh-hhHHHHHHHHHHHH
Confidence 34578999999999999999999933 334 99999999999986
No 17
>KOG3560 consensus Aryl-hydrocarbon receptor [Transcription]
Probab=74.54 E-value=2.4 Score=48.04 Aligned_cols=40 Identities=23% Similarity=0.446 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHhhccCCC----CCCCCCchhhHHHHHHHHHH
Q 008874 380 ERVRREKISERMKFLQDLVPG----CSKVTGKAVMLDEIINYVQS 420 (550)
Q Consensus 380 ERrRReKINerf~aLq~LVP~----~~K~tDKASILdeAI~YIK~ 420 (550)
-+|-|+|+|-.+..|..|+|- ..|+ ||.+||.-++-|++-
T Consensus 33 SKRHRdRLNaELD~lAsLLPfpqdiisKL-DkLSVLRLSVSyLr~ 76 (712)
T KOG3560|consen 33 SKRHRDRLNAELDHLASLLPFPQDIISKL-DKLSVLRLSVSYLRV 76 (712)
T ss_pred chhHHHHhhhHHHHHHHhcCCCHHHHhhh-hhhhhhhhhHHHHHH
Confidence 366899999999999999994 4777 999999999999864
No 18
>KOG3898 consensus Transcription factor NeuroD and related HTH proteins [Transcription]
Probab=67.40 E-value=6.5 Score=40.22 Aligned_cols=47 Identities=23% Similarity=0.417 Sum_probs=39.6
Q ss_pred ccHHHHHHHHHHHHHHHHhhccCCC---CCCCCCchhhHHHHHHHHHHHHH
Q 008874 376 HSLAERVRREKISERMKFLQDLVPG---CSKVTGKAVMLDEIINYVQSLQR 423 (550)
Q Consensus 376 HslaERrRReKINerf~aLq~LVP~---~~K~tDKASILdeAI~YIK~LQ~ 423 (550)
-+..||+|=-.+|+-|..||.+||. ..|+ .|.-.|.-|=+||..|++
T Consensus 76 aNaRER~RMH~LNdAld~LReviP~~~~~~kl-skIetl~~a~~yi~als~ 125 (254)
T KOG3898|consen 76 ANARERTRMHDLNDALDALREVIPHGLHPPKL-SKIETLRLAANYIAALSE 125 (254)
T ss_pred ccchhhccccchhHHHHHhHhhccCcCCCCCC-CcchhHHhhhcchhhhcc
Confidence 3678999999999999999999993 4555 688889899999988874
No 19
>KOG3559 consensus Transcriptional regulator SIM1 [Transcription]
Probab=65.95 E-value=4.8 Score=44.51 Aligned_cols=45 Identities=29% Similarity=0.293 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCCCC---CCCchhhHHHHHHHHHHHH
Q 008874 378 LAERVRREKISERMKFLQDLVPGCSK---VTGKAVMLDEIINYVQSLQ 422 (550)
Q Consensus 378 laERrRReKINerf~aLq~LVP~~~K---~tDKASILdeAI~YIK~LQ 422 (550)
-+.|.||++=|-.|.+|..|+|-... ..||++|+.-|.-|||--+
T Consensus 7 naA~tRRekEN~EF~eLAklLPLa~AItsQlDKasiiRLtTsYlKmr~ 54 (598)
T KOG3559|consen 7 NAARTRREKENYEFYELAKLLPLASAITSQLDKASIIRLTTSYLKMRN 54 (598)
T ss_pred hHHHHHHHhhcchHHHHHhhccchhhhhhccchhhhhhHHHHHHHHHH
Confidence 45789999999999999999995422 2499999999999998544
No 20
>KOG4395 consensus Transcription factor Atonal, contains HTH domain [Transcription]
Probab=51.17 E-value=22 Score=37.25 Aligned_cols=58 Identities=24% Similarity=0.252 Sum_probs=43.5
Q ss_pred hhhccccccccccHHHHHHHHHHHHHHHHhhccCCCCC--CCCCchhhHHHHHHHHHHHHHHH
Q 008874 365 VRARRGQATNSHSLAERVRREKISERMKFLQDLVPGCS--KVTGKAVMLDEIINYVQSLQRQV 425 (550)
Q Consensus 365 ~RarR~qAt~~HslaERrRReKINerf~aLq~LVP~~~--K~tDKASILdeAI~YIK~LQ~QV 425 (550)
+.++|+.+ -+..||+|=..+|..|..|+..||... +...|---|..|-.||-.|-..+
T Consensus 170 v~~~rr~a---anarErrrm~gLN~AfD~Lr~v~p~~~~d~~LSkyetLqmaq~yi~~l~~~l 229 (285)
T KOG4395|consen 170 VNSHRRLA---ANARERRRMNGLNSAFDRLRLVVPDGDSDKKLSKYETLQMAQGYILALGCLL 229 (285)
T ss_pred HHHhhhcc---cchHHHHHhhhHHHHHHHHHHhcCCCCccchhhhhhHHHHHHHHHhhhHHhh
Confidence 33444444 577899999999999999999999653 22367777888888888776544
No 21
>PF13334 DUF4094: Domain of unknown function (DUF4094)
Probab=36.20 E-value=59 Score=28.99 Aligned_cols=26 Identities=27% Similarity=0.419 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhcC
Q 008874 411 LDEIINYVQSLQRQVEFLSMKLATVN 436 (550)
Q Consensus 411 LdeAI~YIK~LQ~QVe~Le~k~aavn 436 (550)
+.++-+-|+.|.+.|-.|||++++..
T Consensus 68 V~kTh~aIq~LdKtIS~LEMELAaAR 93 (95)
T PF13334_consen 68 VSKTHEAIQSLDKTISSLEMELAAAR 93 (95)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 47777888999999999999998754
No 22
>KOG3582 consensus Mlx interactors and related transcription factors [Transcription]
Probab=31.99 E-value=19 Score=42.25 Aligned_cols=59 Identities=20% Similarity=0.268 Sum_probs=47.2
Q ss_pred ccccHHHHHHHHHHHHHHHHhhccCCCCCCCC----CchhhHHHHHHHHHHHHHHHHHHHhhh
Q 008874 374 NSHSLAERVRREKISERMKFLQDLVPGCSKVT----GKAVMLDEIINYVQSLQRQVEFLSMKL 432 (550)
Q Consensus 374 ~~HslaERrRReKINerf~aLq~LVP~~~K~t----DKASILdeAI~YIK~LQ~QVe~Le~k~ 432 (550)
..|+-+|.+||+.|.-.+..|-.++-+..++. -++.-|..+++||.-++.+...+.++-
T Consensus 653 it~~Sa~qkrr~n~kl~~~~~Ns~~Sn~~~l~s~k~t~~~~~q~~vhYi~~t~~e~~~v~~e~ 715 (856)
T KOG3582|consen 653 ITHISAEQKRRFNIKLQFDVLNSLSSNSSSLSSIKTTNSNSLQKTVHYINVTQQERVPVQEEA 715 (856)
T ss_pred ccCccHHHHHHhhHHhhhHhhhhhccCcccccchhhhccccccCceeeeeccchhccccchhh
Confidence 57999999999999999999999997665432 355669999999999987665555443
No 23
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=28.78 E-value=72 Score=27.84 Aligned_cols=27 Identities=22% Similarity=0.303 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhcCC
Q 008874 411 LDEIINYVQSLQRQVEFLSMKLATVNP 437 (550)
Q Consensus 411 LdeAI~YIK~LQ~QVe~Le~k~aavnp 437 (550)
+..||+-|.-||..|++|+++...+..
T Consensus 13 iqqAvdTI~LLQmEieELKEknn~l~~ 39 (79)
T COG3074 13 VQQAIDTITLLQMEIEELKEKNNSLSQ 39 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHhHH
Confidence 578999999999999999998875543
No 24
>KOG1352 consensus Vacuolar H+-ATPase V1 sector, subunit A [Energy production and conversion]
Probab=28.01 E-value=30 Score=38.74 Aligned_cols=24 Identities=42% Similarity=0.693 Sum_probs=21.1
Q ss_pred CCCCCCCCChh-----------HHhhhcCccccCC
Q 008874 142 QSLSQFPADSA-----------FIERAARFSSFSG 165 (550)
Q Consensus 142 ~~l~~f~adsg-----------F~eraarfscf~~ 165 (550)
--|++.|||+| |-|||.|.-|.|+
T Consensus 365 GRLaEMPADsGyPAYLgArLAsFYERAG~vkcLGs 399 (618)
T KOG1352|consen 365 GRLAEMPADSGYPAYLGARLASFYERAGRVKCLGS 399 (618)
T ss_pred hhhhcCcCcCCCcHHHHHHHHHHHHhcCceeecCC
Confidence 35889999997 7899999999997
No 25
>KOG4447 consensus Transcription factor TWIST [Transcription]
Probab=25.99 E-value=53 Score=32.32 Aligned_cols=44 Identities=32% Similarity=0.454 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHhhccCCCCCC--CCCchhhHHHHHHHHHHHHH
Q 008874 379 AERVRREKISERMKFLQDLVPGCSK--VTGKAVMLDEIINYVQSLQR 423 (550)
Q Consensus 379 aERrRReKINerf~aLq~LVP~~~K--~tDKASILdeAI~YIK~LQ~ 423 (550)
.||.|..++++.+..|+.|+|+... +..|-+ |.-+-+||++|.+
T Consensus 29 ~e~~R~~~ls~~s~l~g~l~pgspa~gk~~~kt-lr~~~~~~~~~dE 74 (173)
T KOG4447|consen 29 KERGRKRRLSDASTLLGKLEPGSPADGKRGKKT-LRIGTDSIQSLDE 74 (173)
T ss_pred HHHhHHhhhhhhhhhccccCCCCCCcccccccc-cccCCCchhhHHH
Confidence 5788999999999999999997643 211222 5555566665543
No 26
>KOG0709 consensus CREB/ATF family transcription factor [Transcription]
Probab=25.64 E-value=54 Score=36.85 Aligned_cols=42 Identities=31% Similarity=0.304 Sum_probs=26.7
Q ss_pred ccchhhhhccccccccccHHHHHHHHHHHHHHHHhhccCCCCCCC
Q 008874 360 EEYIHVRARRGQATNSHSLAERVRREKISERMKFLQDLVPGCSKV 404 (550)
Q Consensus 360 e~yi~~RarR~qAt~~HslaERrRReKINerf~aLq~LVP~~~K~ 404 (550)
|+.+..|.||..+ ...+..|.|||. ++.+..|..=|=.|++.
T Consensus 246 EEriLKrvRRKIr-NK~SAQESRrkK--keYid~LE~rv~~~tae 287 (472)
T KOG0709|consen 246 EERILKRVRRKIR-NKRSAQESRRKK--KEYIDGLESRVSAFTAE 287 (472)
T ss_pred HHHHHHHHHHHHH-hhhhhHHHHHhH--hhHHHHHhhhhhhcccC
Confidence 3445555554333 234556766665 78899999888877775
No 27
>KOG3582 consensus Mlx interactors and related transcription factors [Transcription]
Probab=23.70 E-value=27 Score=41.01 Aligned_cols=56 Identities=14% Similarity=0.166 Sum_probs=46.1
Q ss_pred ccccHHHHHHHHHHHHHHHHhhccCCCC----CCCCCchhhHHHHHHHHHHHHHHHHHHHhhh
Q 008874 374 NSHSLAERVRREKISERMKFLQDLVPGC----SKVTGKAVMLDEIINYVQSLQRQVEFLSMKL 432 (550)
Q Consensus 374 ~~HslaERrRReKINerf~aLq~LVP~~----~K~tDKASILdeAI~YIK~LQ~QVe~Le~k~ 432 (550)
..|+-+|||||..+-+++..|-.|.|.. .+++.+++||. +-|+.+|+.-+.+.++.
T Consensus 789 a~sih~lrr~~~~~~dq~~sL~alrp~v~~~~~ql~S~tS~L~---dp~~~~eq~ska~~e~~ 848 (856)
T KOG3582|consen 789 AGSIHALRRTRLNWLDQFCSLPALRPQVLLNLRQLLSSTSILT---DPIKQPEQASKAVTEKI 848 (856)
T ss_pred cchHHHHHHHHHHHhhccccHHHHHHHHHhhHHHhhhhhhccc---CcccchHHHHHHHHhhh
Confidence 4688899999999999999999999954 45567999999 77888888777766644
No 28
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=21.74 E-value=1.2e+02 Score=25.82 Aligned_cols=26 Identities=19% Similarity=0.210 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhcC
Q 008874 411 LDEIINYVQSLQRQVEFLSMKLATVN 436 (550)
Q Consensus 411 LdeAI~YIK~LQ~QVe~Le~k~aavn 436 (550)
+..||+-|..||.+|+.|+.++..+.
T Consensus 13 i~~aveti~~Lq~e~eeLke~n~~L~ 38 (72)
T PF06005_consen 13 IQQAVETIALLQMENEELKEKNNELK 38 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 57899999999999999998765443
No 29
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=20.62 E-value=1.1e+02 Score=27.11 Aligned_cols=29 Identities=21% Similarity=0.271 Sum_probs=24.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhcCCC
Q 008874 410 MLDEIINYVQSLQRQVEFLSMKLATVNPR 438 (550)
Q Consensus 410 ILdeAI~YIK~LQ~QVe~Le~k~aavnp~ 438 (550)
-+..||+-|.-||.+|++|+++...+...
T Consensus 12 KIqqAvdtI~LLqmEieELKekn~~L~~e 40 (79)
T PRK15422 12 KVQQAIDTITLLQMEIEELKEKNNSLSQE 40 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36789999999999999999987766654
Done!