Query 008874
Match_columns 550
No_of_seqs 252 out of 901
Neff 3.5
Searched_HMMs 29240
Date Mon Mar 25 13:44:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008874.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008874hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4ati_A MITF, microphthalmia-as 99.6 1.6E-16 5.5E-21 140.7 7.1 87 360-446 15-110 (118)
2 1am9_A Srebp-1A, protein (ster 99.6 2.6E-16 9E-21 131.2 5.0 65 373-437 7-71 (82)
3 1a0a_A BHLH, protein (phosphat 99.5 4.4E-15 1.5E-19 118.9 1.3 54 373-426 3-62 (63)
4 1an4_A Protein (upstream stimu 99.5 1E-14 3.4E-19 116.0 3.1 55 372-426 5-64 (65)
5 4h10_B Circadian locomoter out 99.5 1.6E-14 5.6E-19 118.8 4.5 58 372-429 8-65 (71)
6 4h10_A ARYL hydrocarbon recept 99.4 1.1E-14 3.8E-19 120.0 1.3 54 369-423 6-63 (73)
7 1hlo_A Protein (transcription 99.4 1.4E-13 4.9E-18 113.6 5.9 61 374-435 14-76 (80)
8 1nkp_B MAX protein, MYC proto- 99.4 1.9E-13 6.6E-18 113.3 6.2 63 374-437 4-68 (83)
9 1nkp_A C-MYC, MYC proto-oncoge 99.4 5.5E-13 1.9E-17 112.8 6.1 59 374-433 8-69 (88)
10 3u5v_A Protein MAX, transcript 99.3 9.8E-13 3.3E-17 109.1 3.7 57 374-430 7-66 (76)
11 1nlw_A MAD protein, MAX dimeri 99.2 2.8E-11 9.6E-16 101.0 7.0 61 374-435 3-66 (80)
12 4f3l_A Mclock, circadian locom 98.9 1.2E-09 4.2E-14 109.0 5.6 54 371-425 11-65 (361)
13 1mdy_A Protein (MYOD BHLH doma 98.8 3.2E-09 1.1E-13 86.5 4.7 51 375-426 15-67 (68)
14 4f3l_B BMAL1B; BHLH, PAS, circ 98.8 2E-09 6.9E-14 108.9 3.7 54 370-424 11-68 (387)
15 2ql2_B Neurod1, neurogenic dif 98.8 7.3E-09 2.5E-13 82.4 5.3 52 375-426 5-58 (60)
16 4ath_A MITF, microphthalmia-as 98.6 2.8E-08 9.7E-13 84.2 5.0 65 384-448 4-77 (83)
17 2lfh_A DNA-binding protein inh 98.2 5E-07 1.7E-11 74.1 1.7 45 378-423 20-67 (68)
18 4aya_A DNA-binding protein inh 97.5 0.00015 5.2E-09 63.0 6.3 48 380-427 33-82 (97)
19 2wt7_A Proto-oncogene protein 42.4 44 0.0015 26.2 5.3 46 380-439 1-46 (63)
20 3coq_A Regulatory protein GAL4 35.7 27 0.00093 27.6 3.2 28 415-442 44-71 (89)
21 1zme_C Proline utilization tra 31.2 18 0.0006 27.6 1.4 21 416-436 44-64 (70)
22 2er8_A Regulatory protein Leu3 30.7 32 0.0011 26.4 2.8 22 415-436 48-69 (72)
23 2wuj_A Septum site-determining 30.4 47 0.0016 25.7 3.7 30 409-438 27-56 (57)
24 3muj_A Transcription factor CO 28.3 57 0.0019 30.0 4.4 35 386-421 95-133 (138)
25 2jee_A YIIU; FTSZ, septum, coi 27.0 53 0.0018 27.8 3.6 27 411-437 15-41 (81)
26 2oqq_A Transcription factor HY 26.0 20 0.00069 27.1 0.8 25 416-440 3-27 (42)
27 1dh3_A Transcription factor CR 25.6 45 0.0015 25.7 2.8 24 416-439 22-45 (55)
28 1p3q_Q VPS9P, vacuolar protein 24.5 75 0.0026 24.9 3.8 26 378-403 3-28 (54)
29 1hwt_C Protein (heme activator 23.6 40 0.0014 26.3 2.2 22 415-436 57-78 (81)
30 1pyi_A Protein (pyrimidine pat 20.9 78 0.0027 25.4 3.5 23 415-437 47-69 (96)
No 1
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=99.64 E-value=1.6e-16 Score=140.73 Aligned_cols=87 Identities=30% Similarity=0.427 Sum_probs=50.9
Q ss_pred ccchhhhhccccccccccHHHHHHHHHHHHHHHHhhccCCCCCC---CCCchhhHHHHHHHHHHHHHHHHHHHhh-----
Q 008874 360 EEYIHVRARRGQATNSHSLAERVRREKISERMKFLQDLVPGCSK---VTGKAVMLDEIINYVQSLQRQVEFLSMK----- 431 (550)
Q Consensus 360 e~yi~~RarR~qAt~~HslaERrRReKINerf~aLq~LVP~~~K---~tDKASILdeAI~YIK~LQ~QVe~Le~k----- 431 (550)
++..+.++++++++.+|+++||+||++||++|.+|++|||+|.+ ..+|++||++||+||++||.+++.|+..
T Consensus 15 ~~~~~~~~k~~~kr~~Hn~~ERrRR~~In~~~~~L~~lvP~~~~~~~k~~Ka~IL~~aieYIk~Lq~~~~~l~~~~~~~~ 94 (118)
T 4ati_A 15 ESEARALAKERQKKDNHNLIERRRRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKDLENRQK 94 (118)
T ss_dssp ----------------CHHHHHHHHHHHHHHHHHHHHHSCCC----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC---
T ss_pred cchHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567788888889999999999999999999999999999863 2489999999999999999999999854
Q ss_pred -hhhcCCCccchhhhh
Q 008874 432 -LATVNPRLDFNIEEL 446 (550)
Q Consensus 432 -~aavnp~l~~~i~~L 446 (550)
+...|..|...|..|
T Consensus 95 ~l~~~n~~L~~riqeL 110 (118)
T 4ati_A 95 KLEHANRHLLLRVQEL 110 (118)
T ss_dssp ----------------
T ss_pred HHHHHHHHHHHHHHHH
Confidence 344555665555554
No 2
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=99.61 E-value=2.6e-16 Score=131.15 Aligned_cols=65 Identities=25% Similarity=0.376 Sum_probs=58.9
Q ss_pred cccccHHHHHHHHHHHHHHHHhhccCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHhhhhhcCC
Q 008874 373 TNSHSLAERVRREKISERMKFLQDLVPGCSKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATVNP 437 (550)
Q Consensus 373 t~~HslaERrRReKINerf~aLq~LVP~~~K~tDKASILdeAI~YIK~LQ~QVe~Le~k~aavnp 437 (550)
...|+++||+||++||++|.+|++|||++....+||+||++||+||++||.+++.|+.++..+..
T Consensus 7 r~~H~~~ErrRR~~in~~f~~L~~lvP~~~~k~~Ka~IL~~Ai~YI~~Lq~~~~~L~~e~~~L~~ 71 (82)
T 1am9_A 7 RTAHNAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQKLKQENLSLRT 71 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45799999999999999999999999998444599999999999999999999999998876644
No 3
>1a0a_A BHLH, protein (phosphate system positive regulatory protein PHO4); transcription factor, basic helix loop helix; HET: DNA; 2.80A {Saccharomyces cerevisiae} SCOP: a.38.1.1
Probab=99.48 E-value=4.4e-15 Score=118.92 Aligned_cols=54 Identities=28% Similarity=0.442 Sum_probs=47.9
Q ss_pred cccccHHHHHHHHHHHHHHHHhhccCCCCCC------CCCchhhHHHHHHHHHHHHHHHH
Q 008874 373 TNSHSLAERVRREKISERMKFLQDLVPGCSK------VTGKAVMLDEIINYVQSLQRQVE 426 (550)
Q Consensus 373 t~~HslaERrRReKINerf~aLq~LVP~~~K------~tDKASILdeAI~YIK~LQ~QVe 426 (550)
..+|+++||+||++||+.|..|+.|||.+.+ ..+||+||+.||+||+.||++|+
T Consensus 3 r~~H~~aEr~RR~rIn~~~~~L~~LlP~~~~~~~~~~k~sKa~iL~~Ai~YIk~Lq~~~~ 62 (63)
T 1a0a_A 3 RESHKHAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQNGS 62 (63)
T ss_dssp TTGGGGGTHHHHHHHHHHHHHHHHTSCHHHHTSSCCCCSCTTHHHHHHHHHHHHHHTCSC
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHCCCcccccccCCcccHHHHHHHHHHHHHHHHHHhh
Confidence 3589999999999999999999999997733 23699999999999999998764
No 4
>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1
Probab=99.48 E-value=1e-14 Score=116.00 Aligned_cols=55 Identities=27% Similarity=0.431 Sum_probs=49.0
Q ss_pred ccccccHHHHHHHHHHHHHHHHhhccCCCCCC-----CCCchhhHHHHHHHHHHHHHHHH
Q 008874 372 ATNSHSLAERVRREKISERMKFLQDLVPGCSK-----VTGKAVMLDEIINYVQSLQRQVE 426 (550)
Q Consensus 372 At~~HslaERrRReKINerf~aLq~LVP~~~K-----~tDKASILdeAI~YIK~LQ~QVe 426 (550)
....|+++||+||++||+.|.+|++|||.|.. ..+|++||++||+||+.||.+++
T Consensus 5 rr~~H~~~Er~RR~~in~~~~~L~~lvP~~~~~~~~~k~~Ka~IL~~ai~YI~~Lq~~~~ 64 (65)
T 1an4_A 5 RRAQHNEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELRQSNH 64 (65)
T ss_dssp CCCSSHHHHHHHHHHHHHHHHHHHHHSCCCCCCSSTTCCCTTTTTTTTHHHHHHHHTTTC
T ss_pred HHHhhchHHHHHHHHHHHHHHHHHHHCcCcccccccCCCCHHHHHHHHHHHHHHHHHHhc
Confidence 44689999999999999999999999999872 24999999999999999998753
No 5
>4h10_B Circadian locomoter output cycles protein kaput; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.48 E-value=1.6e-14 Score=118.77 Aligned_cols=58 Identities=21% Similarity=0.407 Sum_probs=51.6
Q ss_pred ccccccHHHHHHHHHHHHHHHHhhccCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHH
Q 008874 372 ATNSHSLAERVRREKISERMKFLQDLVPGCSKVTGKAVMLDEIINYVQSLQRQVEFLS 429 (550)
Q Consensus 372 At~~HslaERrRReKINerf~aLq~LVP~~~K~tDKASILdeAI~YIK~LQ~QVe~Le 429 (550)
...+|+++||+||++||++|.+|+.|||++..+.||++||+.||+||+.||.++.-|+
T Consensus 8 kR~~Hn~iErrRRd~IN~~i~eL~~LvP~~~~K~dK~sIL~~aI~yik~Lq~~~~~~~ 65 (71)
T 4h10_B 8 KRVSRNKSEKKRRDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFLRKHKEITAWLE 65 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSSSCCSCCCHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HhhhhhHHHhhHHHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHHHHHHhhhHHH
Confidence 3458999999999999999999999999865334999999999999999999987665
No 6
>4h10_A ARYL hydrocarbon receptor nuclear translocator-LI 1; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.45 E-value=1.1e-14 Score=119.96 Aligned_cols=54 Identities=30% Similarity=0.471 Sum_probs=48.1
Q ss_pred cccccccccHHHHHHHHHHHHHHHHhhccCCCC----CCCCCchhhHHHHHHHHHHHHH
Q 008874 369 RGQATNSHSLAERVRREKISERMKFLQDLVPGC----SKVTGKAVMLDEIINYVQSLQR 423 (550)
Q Consensus 369 R~qAt~~HslaERrRReKINerf~aLq~LVP~~----~K~tDKASILdeAI~YIK~LQ~ 423 (550)
+.++...|+++||+||++||+.|.+|+.|||.| .|+ |||+||+.||+||+.||.
T Consensus 6 ~~~rR~~H~~~ERrRR~rIN~~l~eL~~LvP~~~~~~~Kl-dKasIL~~tV~ylk~l~~ 63 (73)
T 4h10_A 6 IKNAREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKL-DKLTVLRMAVQHMKTLRG 63 (73)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHTCSSCC-CHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHHHHccccccccccc-cHHHHHHHHHHHHHHHhc
Confidence 334456899999999999999999999999988 565 999999999999999974
No 7
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.42 E-value=1.4e-13 Score=113.64 Aligned_cols=61 Identities=28% Similarity=0.476 Sum_probs=56.4
Q ss_pred ccccHHHHHHHHHHHHHHHHhhccCCCC--CCCCCchhhHHHHHHHHHHHHHHHHHHHhhhhhc
Q 008874 374 NSHSLAERVRREKISERMKFLQDLVPGC--SKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATV 435 (550)
Q Consensus 374 ~~HslaERrRReKINerf~aLq~LVP~~--~K~tDKASILdeAI~YIK~LQ~QVe~Le~k~aav 435 (550)
..|+.+||+||.+||+.|..|+.|||.+ .|. +|++||..||+||+.||.+++.|+.++..+
T Consensus 14 ~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k~-sK~~iL~~Ai~YI~~L~~~~~~L~~e~~~L 76 (80)
T 1hlo_A 14 AHHNALERKRRDHIKDSFHSLRDSVPSLQGEKA-SRAQILDKATEYIQYMRRKNHTHQQDIDDL 76 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSGGGTTSCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHTH
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHCcCCCCCCc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4799999999999999999999999987 465 999999999999999999999999987654
No 8
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=99.41 E-value=1.9e-13 Score=113.28 Aligned_cols=63 Identities=27% Similarity=0.461 Sum_probs=56.4
Q ss_pred ccccHHHHHHHHHHHHHHHHhhccCCCC--CCCCCchhhHHHHHHHHHHHHHHHHHHHhhhhhcCC
Q 008874 374 NSHSLAERVRREKISERMKFLQDLVPGC--SKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATVNP 437 (550)
Q Consensus 374 ~~HslaERrRReKINerf~aLq~LVP~~--~K~tDKASILdeAI~YIK~LQ~QVe~Le~k~aavnp 437 (550)
..|+.+||+||++||+.|..|+++||.+ .|. +|++||..||+||+.||.+++.|+.++..+..
T Consensus 4 ~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k~-sK~~iL~~Ai~YI~~L~~~~~~l~~e~~~L~~ 68 (83)
T 1nkp_B 4 AHHNALERKRRDHIKDSFHSLRDSVPSLQGEKA-SRAQILDKATEYIQYMRRKNHTHQQDIDDLKR 68 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSGGGTTSCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHhhhHHHHHHHHHHHHHHHHHHHCCCCCCCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4799999999999999999999999985 665 99999999999999999999999887765543
No 9
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.36 E-value=5.5e-13 Score=112.83 Aligned_cols=59 Identities=27% Similarity=0.404 Sum_probs=53.2
Q ss_pred ccccHHHHHHHHHHHHHHHHhhccCCCC---CCCCCchhhHHHHHHHHHHHHHHHHHHHhhhh
Q 008874 374 NSHSLAERVRREKISERMKFLQDLVPGC---SKVTGKAVMLDEIINYVQSLQRQVEFLSMKLA 433 (550)
Q Consensus 374 ~~HslaERrRReKINerf~aLq~LVP~~---~K~tDKASILdeAI~YIK~LQ~QVe~Le~k~a 433 (550)
..|+.+||+||++||+.|..|+++||.+ .|. +|++||.+||+||+.|+.+.+.|..+..
T Consensus 8 ~~Hn~~ER~RR~~ln~~f~~Lr~~vP~~~~~~K~-sK~~iL~~A~~YI~~L~~~~~~l~~~~~ 69 (88)
T 1nkp_A 8 RTHNVLERQRRNELKRSFFALRDQIPELENNEKA-PKVVILKKATAYILSVQAEEQKLISEED 69 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCGGGTTCTTC-CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3699999999999999999999999976 465 9999999999999999999888776554
No 10
>3u5v_A Protein MAX, transcription factor E2-alpha chimer; basic helix-loop-helix (BHLH); 1.70A {Mus musculus} PDB: 2ql2_A*
Probab=99.29 E-value=9.8e-13 Score=109.09 Aligned_cols=57 Identities=25% Similarity=0.355 Sum_probs=49.0
Q ss_pred ccccHHHHHHHHHHHHHHHHhhccCCCC---CCCCCchhhHHHHHHHHHHHHHHHHHHHh
Q 008874 374 NSHSLAERVRREKISERMKFLQDLVPGC---SKVTGKAVMLDEIINYVQSLQRQVEFLSM 430 (550)
Q Consensus 374 ~~HslaERrRReKINerf~aLq~LVP~~---~K~tDKASILdeAI~YIK~LQ~QVe~Le~ 430 (550)
..|+..||+||++||+.|.+|+++||.+ .|...|+.||..||+||+.||++|++++.
T Consensus 7 ~~hN~~ER~Rr~~IN~~f~~Lr~~vP~~~~~~K~~sK~~IL~~AieYI~~Lq~~l~e~~~ 66 (76)
T 3u5v_A 7 AHHNALERKRRRDINEAFRELGRMCQMHLKSDKAQTKLLILQQAVQVILGLEQQVRERNL 66 (76)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred hhchHHHhhhHHHHHHHHHHHHHHcCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3699999999999999999999999953 44336889999999999999999998754
No 11
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=99.19 E-value=2.8e-11 Score=100.98 Aligned_cols=61 Identities=18% Similarity=0.225 Sum_probs=54.3
Q ss_pred ccccHHHHHHHHHHHHHHHHhhccCCCC---CCCCCchhhHHHHHHHHHHHHHHHHHHHhhhhhc
Q 008874 374 NSHSLAERVRREKISERMKFLQDLVPGC---SKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATV 435 (550)
Q Consensus 374 ~~HslaERrRReKINerf~aLq~LVP~~---~K~tDKASILdeAI~YIK~LQ~QVe~Le~k~aav 435 (550)
..|+..||+||..||+.|..|+++||.+ .|. .|+.||..||+||+.||.+.+.|..+...+
T Consensus 3 ~~HN~~ER~RR~~lk~~f~~Lr~~vP~~~~~~k~-sk~~iL~kA~~yI~~L~~~~~~l~~e~~~L 66 (80)
T 1nlw_A 3 STHNEMEKNRRAHLRLSLEKLKGLVPLGPDSSRH-TTLSLLTKAKLHIKKLEDSDRKAVHQIDQL 66 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSSCCCSSSCCC-TTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3699999999999999999999999965 454 799999999999999999999888776544
No 12
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=98.88 E-value=1.2e-09 Score=109.03 Aligned_cols=54 Identities=20% Similarity=0.394 Sum_probs=42.0
Q ss_pred cccccccHHHHHHHHHHHHHHHHhhccCC-CCCCCCCchhhHHHHHHHHHHHHHHH
Q 008874 371 QATNSHSLAERVRREKISERMKFLQDLVP-GCSKVTGKAVMLDEIINYVQSLQRQV 425 (550)
Q Consensus 371 qAt~~HslaERrRReKINerf~aLq~LVP-~~~K~tDKASILdeAI~YIK~LQ~QV 425 (550)
....+|+++||+||++||+.|.+|+.||| ...|+ ||++||..||.||+.|+...
T Consensus 11 ~~~~~~~~~e~~rr~~~n~~~~~l~~~~p~~~~~~-dk~~il~~~~~~~~~~~~~~ 65 (361)
T 4f3l_A 11 AKRVSRNKSEKKRRDQFNVLIKELGSMLPGNARKM-DKSTVLQKSIDFLRKHKETT 65 (361)
T ss_dssp --------CHHHHHHHHHHHHHHHHHTCCSSSCCC-CHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHhCCCCCCCc-CHHHHHHHHHHHHHHHHhhc
Confidence 34458999999999999999999999999 45566 99999999999999998643
No 13
>1mdy_A Protein (MYOD BHLH domain); protein-DNA complex, transcription/DNA complex; HET: DNA; 2.80A {Mus musculus} SCOP: a.38.1.1 PDB: 1mdy_B*
Probab=98.80 E-value=3.2e-09 Score=86.45 Aligned_cols=51 Identities=24% Similarity=0.398 Sum_probs=46.0
Q ss_pred cccHHHHHHHHHHHHHHHHhhccCCCC--CCCCCchhhHHHHHHHHHHHHHHHH
Q 008874 375 SHSLAERVRREKISERMKFLQDLVPGC--SKVTGKAVMLDEIINYVQSLQRQVE 426 (550)
Q Consensus 375 ~HslaERrRReKINerf~aLq~LVP~~--~K~tDKASILdeAI~YIK~LQ~QVe 426 (550)
.|+..||+|+..||+.|..|+++||.. .|+ +|..||..||+||+.||+.++
T Consensus 15 ~aN~rER~R~~~iN~af~~LR~~iP~~~~~Kl-SKi~tLr~Ai~YI~~L~~~L~ 67 (68)
T 1mdy_A 15 AATMRERRRLSKVNEAFETLKRSTSSNPNQRL-PKVEILRNAIRYIEGLQALLR 67 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSCSCTTSCC-CHHHHHHHHHHHHHHHHHTTC
T ss_pred HhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCC-CHHHHHHHHHHHHHHHHHHHc
Confidence 599999999999999999999999964 454 899999999999999998653
No 14
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=98.78 E-value=2e-09 Score=108.93 Aligned_cols=54 Identities=28% Similarity=0.399 Sum_probs=48.1
Q ss_pred ccccccccHHHHHHHHHHHHHHHHhhccCC----CCCCCCCchhhHHHHHHHHHHHHHH
Q 008874 370 GQATNSHSLAERVRREKISERMKFLQDLVP----GCSKVTGKAVMLDEIINYVQSLQRQ 424 (550)
Q Consensus 370 ~qAt~~HslaERrRReKINerf~aLq~LVP----~~~K~tDKASILdeAI~YIK~LQ~Q 424 (550)
++++++|+.+||+||+|||+.|.+|+.||| ...|+ ||++||..||.|||.|+..
T Consensus 11 ~~~~~~~~~~ek~rR~~~n~~~~~L~~l~p~~~~~~~k~-dk~~il~~~~~~l~~~~~~ 68 (387)
T 4f3l_B 11 KNAREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKL-DKLTVLRMAVQHMKTLRGA 68 (387)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCSSCC-CHHHHHHHHHHHHHHHHCC
T ss_pred hhhcccccchhhcchHHHHHHHHHHHHhcCCCCcccccc-CHHHHHHHHHHHHHHhhcc
Confidence 445568999999999999999999999999 45676 9999999999999999853
No 15
>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus}
Probab=98.76 E-value=7.3e-09 Score=82.39 Aligned_cols=52 Identities=21% Similarity=0.275 Sum_probs=45.9
Q ss_pred cccHHHHHHHHHHHHHHHHhhccCCCC--CCCCCchhhHHHHHHHHHHHHHHHH
Q 008874 375 SHSLAERVRREKISERMKFLQDLVPGC--SKVTGKAVMLDEIINYVQSLQRQVE 426 (550)
Q Consensus 375 ~HslaERrRReKINerf~aLq~LVP~~--~K~tDKASILdeAI~YIK~LQ~QVe 426 (550)
.|+..||+|+..||+.|..|+.+||.. +++..|..+|..||+||+.||+.++
T Consensus 5 ~~N~rER~R~~~iN~af~~LR~~lP~~~~~~klSKi~tLr~Ai~YI~~L~~~L~ 58 (60)
T 2ql2_B 5 KANARERNRMHGLNAALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEILR 58 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSSSCCSSSCCCHHHHHHHHHHHHHHHHHHTT
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHccCCCCcCcCCHHHHHHHHHHHHHHHHHHHh
Confidence 488999999999999999999999964 2334899999999999999998764
No 16
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=98.61 E-value=2.8e-08 Score=84.17 Aligned_cols=65 Identities=29% Similarity=0.427 Sum_probs=51.5
Q ss_pred HHHHHHHHHHhhccCCCCCC---CCCchhhHHHHHHHHHHHHHHHHHHHh------hhhhcCCCccchhhhhhh
Q 008874 384 REKISERMKFLQDLVPGCSK---VTGKAVMLDEIINYVQSLQRQVEFLSM------KLATVNPRLDFNIEELLA 448 (550)
Q Consensus 384 ReKINerf~aLq~LVP~~~K---~tDKASILdeAI~YIK~LQ~QVe~Le~------k~aavnp~l~~~i~~L~~ 448 (550)
|..||++|.+|..|||.+.. ..+|++||..||+||+.||++++.+.. ++...|.++.+.|.+|..
T Consensus 4 R~nIN~~I~EL~~LiP~~~~~~~k~nKg~IL~ksvdYI~~Lq~e~~r~~e~e~r~k~le~~n~~l~~riqELE~ 77 (83)
T 4ath_A 4 RFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKDLENRQKKLEHANRHLLLRVQELEM 77 (83)
T ss_dssp HHHHHHHHHHHHHHSCCCCCTTCCCSHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHhhhhhhccCCCCCCcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 89999999999999998743 238999999999999999987766653 345566677677766643
No 17
>2lfh_A DNA-binding protein inhibitor ID-3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=98.16 E-value=5e-07 Score=74.14 Aligned_cols=45 Identities=22% Similarity=0.423 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCC---CCCCCchhhHHHHHHHHHHHHH
Q 008874 378 LAERVRREKISERMKFLQDLVPGC---SKVTGKAVMLDEIINYVQSLQR 423 (550)
Q Consensus 378 laERrRReKINerf~aLq~LVP~~---~K~tDKASILdeAI~YIK~LQ~ 423 (550)
-.||+|+..||+.|..||++||.. .|+ +|..+|..||+||..||.
T Consensus 20 erER~Rm~~lN~aF~~LR~~VP~~p~~kKL-SKiEtLr~Ai~YI~~Lq~ 67 (68)
T 2lfh_A 20 EEPLSLLDDMNHCYSRLRELVPGVPRGTQL-SQVEILQRVIDYILDLQV 67 (68)
T ss_dssp CCCSCSSSHHHHHHHHHHHHCCCCCTTCCC-CHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCc-cHHHHHHHHHHHHHHHHc
Confidence 457889999999999999999865 454 899999999999999984
No 18
>4aya_A DNA-binding protein inhibitor ID-2; cell cycle; 2.10A {Homo sapiens}
Probab=97.49 E-value=0.00015 Score=63.03 Aligned_cols=48 Identities=23% Similarity=0.346 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHhhccCCCC--CCCCCchhhHHHHHHHHHHHHHHHHH
Q 008874 380 ERVRREKISERMKFLQDLVPGC--SKVTGKAVMLDEIINYVQSLQRQVEF 427 (550)
Q Consensus 380 ERrRReKINerf~aLq~LVP~~--~K~tDKASILdeAI~YIK~LQ~QVe~ 427 (550)
||.|=..||+.|..||.+||.. +++..|..+|..||+||+.||..++.
T Consensus 33 ~r~Rm~~lN~AF~~LR~~vP~~p~~kKLSKIETLRlAi~YI~~Lq~~L~~ 82 (97)
T 4aya_A 33 PMSLLYNMNDCYSKLKELVPSIPQNKKVSKMEILQHVIDYILDLQIALDS 82 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTSCSSSCCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCcccHHHHHHHHHHHHHHHHHHHhc
Confidence 5778888999999999999964 33348999999999999999988765
No 19
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=42.43 E-value=44 Score=26.17 Aligned_cols=46 Identities=13% Similarity=0.188 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHhhccCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHhhhhhcCCCc
Q 008874 380 ERVRREKISERMKFLQDLVPGCSKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPRL 439 (550)
Q Consensus 380 ERrRReKINerf~aLq~LVP~~~K~tDKASILdeAI~YIK~LQ~QVe~Le~k~aavnp~l 439 (550)
||++|.+...++.+.+. . ..-.+|+..|+.+|+.|+.+...+..++
T Consensus 1 Ekr~rrrerNR~AA~rc-----R---------~rKk~~~~~Le~~v~~L~~~n~~L~~ei 46 (63)
T 2wt7_A 1 EKRRIRRERNKMAAAKC-----R---------NRRRELTDTLQAETDQLEDEKSALQTEI 46 (63)
T ss_dssp CHHHHHHHHHHHHHHHH-----H---------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHhHHHHHHH-----H---------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666652 1 2335677777777777777766655443
No 20
>3coq_A Regulatory protein GAL4; helix bundle, protein-DNA complex; HET: DNA; 2.40A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1
Probab=35.67 E-value=27 Score=27.63 Aligned_cols=28 Identities=18% Similarity=0.277 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHhhhhhcCCCccch
Q 008874 415 INYVQSLQRQVEFLSMKLATVNPRLDFN 442 (550)
Q Consensus 415 I~YIK~LQ~QVe~Le~k~aavnp~l~~~ 442 (550)
..||..|+.+|+.||..+..+.+..+++
T Consensus 44 ~~~~~~L~~r~~~le~~l~~l~~~~~l~ 71 (89)
T 3coq_A 44 RAHLTEVESRLERLEQLFLLIFPREDLD 71 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCSSSCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCchhhH
Confidence 3599999999999999999998877544
No 21
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=31.17 E-value=18 Score=27.64 Aligned_cols=21 Identities=19% Similarity=0.311 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHhhhhhcC
Q 008874 416 NYVQSLQRQVEFLSMKLATVN 436 (550)
Q Consensus 416 ~YIK~LQ~QVe~Le~k~aavn 436 (550)
.||..|+.+|+.|+..+..+.
T Consensus 44 ~~~~~L~~ri~~Le~~l~~l~ 64 (70)
T 1zme_C 44 KYLQQLQKDLNDKTEENNRLK 64 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 477778888888877776554
No 22
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=30.71 E-value=32 Score=26.43 Aligned_cols=22 Identities=9% Similarity=0.206 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHhhhhhcC
Q 008874 415 INYVQSLQRQVEFLSMKLATVN 436 (550)
Q Consensus 415 I~YIK~LQ~QVe~Le~k~aavn 436 (550)
-.||..|+.+|+.|+..+..+.
T Consensus 48 ~~~~~~Le~ri~~Le~~l~~l~ 69 (72)
T 2er8_A 48 RARNEAIEKRFKELTRTLTNLT 69 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3899999999999999887653
No 23
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=30.38 E-value=47 Score=25.71 Aligned_cols=30 Identities=17% Similarity=0.220 Sum_probs=23.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhhhcCCC
Q 008874 409 VMLDEIINYVQSLQRQVEFLSMKLATVNPR 438 (550)
Q Consensus 409 SILdeAI~YIK~LQ~QVe~Le~k~aavnp~ 438 (550)
..|++.++-+..|.++++.|+.++..++.+
T Consensus 27 ~FLd~v~~~~~~l~~e~~~L~~~~~~l~~~ 56 (57)
T 2wuj_A 27 EFLAQVRKDYEIVLRKKTELEAKVNELDER 56 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 469999999999999999999999877654
No 24
>3muj_A Transcription factor COE3; immunoglobulin like fold, helix-loop-helix, structural genom consortium, SGC, DNA binding protein; 1.92A {Homo sapiens} PDB: 3mqi_A
Probab=28.27 E-value=57 Score=30.04 Aligned_cols=35 Identities=26% Similarity=0.443 Sum_probs=28.8
Q ss_pred HHHHHHHHhhccCCCC----CCCCCchhhHHHHHHHHHHH
Q 008874 386 KISERMKFLQDLVPGC----SKVTGKAVMLDEIINYVQSL 421 (550)
Q Consensus 386 KINerf~aLq~LVP~~----~K~tDKASILdeAI~YIK~L 421 (550)
.|.-.|..|+++||.- .++ -|..||..|.+++..|
T Consensus 95 tId~gfqrl~k~~pr~pgdpe~l-pk~~~lkraa~l~e~~ 133 (138)
T 3muj_A 95 TIDYGFQRLQKVIPRHPGDPERL-PKEVLLKRAADLVEAL 133 (138)
T ss_dssp CHHHHHHHHHHHSCCCTTCCSSC-CHHHHHHHHHHHHHHH
T ss_pred ccccchhhhccccCCCCCChhhh-hHHHHHHHHHHHHHHH
Confidence 3788999999999843 343 7999999999998876
No 25
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=26.96 E-value=53 Score=27.78 Aligned_cols=27 Identities=22% Similarity=0.303 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhcCC
Q 008874 411 LDEIINYVQSLQRQVEFLSMKLATVNP 437 (550)
Q Consensus 411 LdeAI~YIK~LQ~QVe~Le~k~aavnp 437 (550)
++.||+-|.-||..|+.|+.++..++.
T Consensus 15 Iq~avdtI~lLqmEieELKekN~~L~~ 41 (81)
T 2jee_A 15 VQQAIDTITLLQMEIEELKEKNNSLSQ 41 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678999999999999999998876544
No 26
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=26.00 E-value=20 Score=27.09 Aligned_cols=25 Identities=28% Similarity=0.426 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHhhhhhcCCCcc
Q 008874 416 NYVQSLQRQVEFLSMKLATVNPRLD 440 (550)
Q Consensus 416 ~YIK~LQ~QVe~Le~k~aavnp~l~ 440 (550)
-|+-+|+.+++.|+.+.+.++.++.
T Consensus 3 aYl~eLE~r~k~le~~naeLEervs 27 (42)
T 2oqq_A 3 AYLSELENRVKDLENKNSELEERLS 27 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3899999999999998888877764
No 27
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=25.56 E-value=45 Score=25.73 Aligned_cols=24 Identities=33% Similarity=0.450 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHhhhhhcCCCc
Q 008874 416 NYVQSLQRQVEFLSMKLATVNPRL 439 (550)
Q Consensus 416 ~YIK~LQ~QVe~Le~k~aavnp~l 439 (550)
.||..|+.+|..|+.++..+..++
T Consensus 22 ~~~~~LE~~v~~L~~eN~~L~~~~ 45 (55)
T 1dh3_A 22 EYVKSLENRVAVLENQNKTLIEEL 45 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 688888888888888776655433
No 28
>1p3q_Q VPS9P, vacuolar protein sorting-associated protein VPS9; trafficking, post translational modification, mono- ubiquitination; 1.70A {Saccharomyces cerevisiae} SCOP: a.5.2.4 PDB: 1mn3_A
Probab=24.50 E-value=75 Score=24.94 Aligned_cols=26 Identities=15% Similarity=0.427 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCCCC
Q 008874 378 LAERVRREKISERMKFLQDLVPGCSK 403 (550)
Q Consensus 378 laERrRReKINerf~aLq~LVP~~~K 403 (550)
+++|-+|..-++-++.|+.+.|+..+
T Consensus 3 ~a~~i~~~e~~~~~~~L~~MFP~lD~ 28 (54)
T 1p3q_Q 3 LIKKIEENERKDTLNTLQNMFPDMDP 28 (54)
T ss_dssp THHHHHHHHHHHHHHHHHHHSTTSCH
T ss_pred HHHHHHHHHHHHHHHHHHHHcccCCH
Confidence 57899999999999999999999876
No 29
>1hwt_C Protein (heme activator protein); transcription factor, asymmetry, GAL4, complex activator/DNA, gene regulation/DNA complex; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 2hap_C* 1qp9_A* 1pyc_A
Probab=23.64 E-value=40 Score=26.34 Aligned_cols=22 Identities=27% Similarity=0.344 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHhhhhhcC
Q 008874 415 INYVQSLQRQVEFLSMKLATVN 436 (550)
Q Consensus 415 I~YIK~LQ~QVe~Le~k~aavn 436 (550)
-.||..|+.+|+.||..+..++
T Consensus 57 ~~~~~~L~~ri~~LE~~l~~l~ 78 (81)
T 1hwt_C 57 DNELKKLRERVKSLEKTLSKVH 78 (81)
T ss_dssp HHHHHHHHHHHHHHHTTC----
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 3799999999999998876554
No 30
>1pyi_A Protein (pyrimidine pathway regulator 1); protein-DNA complex, transcription/DNA complex, GAL4, zinc finger, Zn2Cys6, binuclear cluster; HET: DNA; 3.20A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1
Probab=20.90 E-value=78 Score=25.41 Aligned_cols=23 Identities=17% Similarity=0.177 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHhhhhhcCC
Q 008874 415 INYVQSLQRQVEFLSMKLATVNP 437 (550)
Q Consensus 415 I~YIK~LQ~QVe~Le~k~aavnp 437 (550)
..||+.|+.+|+.|+..+..+..
T Consensus 47 ~~~~~~Le~rl~~le~~l~~~~~ 69 (96)
T 1pyi_A 47 RSYVFFLEDRLAVMMRVLKEYGV 69 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHhCC
Confidence 35999999999999998877654
Done!