BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008876
(550 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 121 bits (304), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 104/337 (30%), Positives = 145/337 (43%), Gaps = 25/337 (7%)
Query: 88 INQLLMHTNQFTGVIPDSFTNLTNLVRLDLHCNYLNGYIPEKIGELQLLEQLDFSNNLLR 147
+ +L + N FTG IP + +N + LV L L NYL+G IP +G L L L N+L
Sbjct: 393 LQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLE 452
Query: 148 GKLPPSLCNLTVISVLYLDNNKLEGAIPFPSSPGQMPSLGFLRLQDNNLTGKIPPTFGYL 207
G++P L + + L LD N L G I PS +L ++ L +N LTG+IP G L
Sbjct: 453 GEIPQELMYVKTLETLILDFNDLTGEI--PSGLSNCTNLNWISLSNNRLTGEIPKWIGRL 510
Query: 208 ASLRRVSLANNKLEGAIPTSLGNLQDLTELYLNGNQLSGQIPKXXXXXXXXXXXXXXRNQ 267
+L + L+NN G IP LG+ + L L LN N +G IP +
Sbjct: 511 ENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPA---------AMFKQSGK 561
Query: 268 IEGPLPSGMFSLQXXXXXXXXXXXXXXXXIPMWMAELPSLSRVYLAG-CGIKGKI----- 321
I +G + + L+R+ C I ++
Sbjct: 562 IAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHT 621
Query: 322 -PEFFRTTPSPLQELDLSVNHLSGSIPAWIGSLTQXXXXXXXXXXXXXXIPETITNLQDL 380
P F + LD+S N LSG IP IGS+ IP+ + +L+ L
Sbjct: 622 SPTF--DNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGL 679
Query: 381 VLLDLHSNKLTGSISQVFKIGQRFPDGSLTYIDLSDN 417
+LDL SNKL G I Q LT IDLS+N
Sbjct: 680 NILDLSSNKLDGRIPQAMSALTM-----LTEIDLSNN 711
Score = 120 bits (301), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 136/513 (26%), Positives = 194/513 (37%), Gaps = 83/513 (16%)
Query: 86 KNINQLLMHTNQFTGVIPDSFTNLTN-LVRLDLHCNYLNGYIPEKIG------------- 131
K++ L + N+FTG IPD + + L LDL N+ G +P G
Sbjct: 266 KSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSN 325
Query: 132 ------------ELQLLEQLDFSNNLLRGKLPPSLCNLTVISVLYLD--NNKLEGAIPFP 177
+++ L+ LD S N G+LP SL NL+ S+L LD +N G I
Sbjct: 326 NFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSA-SLLTLDLSSNNFSGPILPN 384
Query: 178 SSPGQMPSLGFLRLQDNNLTGKIPPTFGYLASLRRVSLANNKLEGAIPTSLGNLQDLTEL 237
+L L LQ+N TGKIPPT + L + L+ N L G IP+SLG+L L +L
Sbjct: 385 LCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDL 444
Query: 238 YLNGNQLSGQIPKXXXXXXXXXXXXXXRNQIEGPLPSGMFSLQXXXXXXXXXXXXXXXXI 297
L N L G+IP+ N + G +PSG+ S I
Sbjct: 445 KLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGL-SNCTNLNWISLSNNRLTGEI 503
Query: 298 PMWMAELPSLSRVYLAGCGIKGKIPEFFRTTPSPLQELDLSVNHLSGSIPAWIGSLTQXX 357
P W+ L +L+ + L+ G IP S L LDL+ N +G+IPA + +
Sbjct: 504 PKWIGRLENLAILKLSNNSFSGNIPAELGDCRS-LIWLDLNTNLFNGTIPAAMFKQSGKI 562
Query: 358 XXXXXXXXXXXXIP----------------------ETITNLQDLVLLDLHSNKLTGSIS 395
I E + L ++ S G S
Sbjct: 563 AANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTS 622
Query: 396 QVFKIGQRFPDGSLTYIDLSDNXXXXXXXXXXXXXXXXXXXXNLSRNVLEGQIPVSVGXX 455
F +GS+ ++D+S N +L G IP +G
Sbjct: 623 PTFD-----NNGSMMFLDMSYN-------------------------MLSGYIPKEIGSM 652
Query: 456 XXXXXXXXXYNKLGYVLPGSLANESSLETLKLQNNRFTGRIPSEYXXXXXXXXXXXSHNL 515
+N + +P + + L L L +N+ GRIP S+N
Sbjct: 653 PYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNN 712
Query: 516 LVGEIPAGKPLSDFPESSFSGNRGLCGKPLTAC 548
L G IP FP + F N GLCG PL C
Sbjct: 713 LSGPIPEMGQFETFPPAKFLNNPGLCGYPLPRC 745
Score = 94.7 bits (234), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 111/415 (26%), Positives = 166/415 (40%), Gaps = 42/415 (10%)
Query: 88 INQLLMHTNQFTGVIPDSFTNLTNLVRLDLHCNYLNGYIPEKIGELQLLEQLDFSNNLLR 147
+ L + N+ +G + + NL LD+ N + IP +G+ L+ LD S N L
Sbjct: 177 LKHLAISGNKISGDV--DVSRCVNLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLS 233
Query: 148 GKLPPSLCNLTVISVLYLDNNKLEGAIPFPSSPGQMPSLGFLRLQDNNLTGKIPPTF-GY 206
G ++ T + +L + +N+ G IP P + SL +L L +N TG+IP G
Sbjct: 234 GDFSRAISTCTELKLLNISSNQFVGPIP----PLPLKSLQYLSLAENKFTGEIPDFLSGA 289
Query: 207 LASLRRVSLANNKLEGAIPTSLGNLQDLTELYLNGNQLSGQIPKXXXXXXXXXXXXXXR- 265
+L + L+ N GA+P G+ L L L+ N SG++P
Sbjct: 290 CDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSF 349
Query: 266 NQIEGPLPSGMFSLQXXXXXXXXXXXXXXXXIPMWMAELP--SLSRVYLAGCGIKGKIPE 323
N+ G LP + +L I + + P +L +YL G GKIP
Sbjct: 350 NEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPP 409
Query: 324 FFRTTPSPLQELDLSVNHLSGSIPAWIGSLTQXXXXXXXXXXXXXXIPETITNLQDLVLL 383
S L L LS N+LSG+IP+ +GSL++ IP+ + ++ L L
Sbjct: 410 TLSNC-SELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETL 468
Query: 384 DLHSNKLTGSISQVFKIGQRFPDGSLTYIDLSDNXXXXXXXXXXXXXXXXXXXXNLSRNV 443
L N LTG I P G +L+ +LS N
Sbjct: 469 ILDFNDLTGEI----------PSGLSNCTNLN--------------------WISLSNNR 498
Query: 444 LEGQIPVSVGXXXXXXXXXXXYNKLGYVLPGSLANESSLETLKLQNNRFTGRIPS 498
L G+IP +G N +P L + SL L L N F G IP+
Sbjct: 499 LTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPA 553
Score = 73.6 bits (179), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 123/470 (26%), Positives = 177/470 (37%), Gaps = 74/470 (15%)
Query: 106 FTNLTNLVRLDLHCNYLNGYIPE--KIGELQLLEQLDFSNNLLR--GKLPPSLCNLTVIS 161
F +L LDL N L+G + +G L+ L+ S+N L GK+ L L +
Sbjct: 93 FKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGL-KLNSLE 151
Query: 162 VLYLDNNKLEGA--IPFPSSPGQMPSLGFLRLQDNNLTGKIPPTFGYLASLRRVSLANNK 219
VL L N + GA + + S G L L + N ++G + + +L + +++N
Sbjct: 152 VLDLSANSISGANVVGWVLSDG-CGELKHLAISGNKISGDVDVS--RCVNLEFLDVSSNN 208
Query: 220 LEGAIPTSLGNLQDLTELYLNGNQLSGQIPKXXXXXXXXXXXXXXRNQIEGPLPSGMFSL 279
IP LG+ L L ++GN+LSG + NQ GP+P
Sbjct: 209 FSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIP------ 261
Query: 280 QXXXXXXXXXXXXXXXXIPMWMAELPSLSRVYLAGCGIKGKIPEFFRTTPSPLQELDLSV 339
P+ L SL + LA G+IP+F L LDLS
Sbjct: 262 ------------------PL---PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSG 300
Query: 340 NHLSGSIPAWIG-------------------------SLTQXXXXXXXXXXXXXXIPETI 374
NH G++P + G + +PE++
Sbjct: 301 NHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESL 360
Query: 375 TNLQ-DLVLLDLHSNKLTGSISQVFKIGQRFPDGSLTYIDLSDNXXXXXXXXXXXXXXXX 433
TNL L+ LDL SN +G I + + Q P +L + L +N
Sbjct: 361 TNLSASLLTLDLSSNNFSGPI--LPNLCQN-PKNTLQELYLQNNGFTGKIPPTLSNCSEL 417
Query: 434 XXXXNLSRNVLEGQIPVSVGXXXXXXXXXXXYNKLGYVLPGSLANESSLETLKLQNNRFT 493
+LS N L G IP S+G N L +P L +LETL L N T
Sbjct: 418 VSL-HLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLT 476
Query: 494 GRIPSEYXXXXXXXXXXXSHNLLVGEIPA--GK----PLSDFPESSFSGN 537
G IPS S+N L GEIP G+ + +SFSGN
Sbjct: 477 GEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGN 526
Score = 68.9 bits (167), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 75/298 (25%), Positives = 108/298 (36%), Gaps = 46/298 (15%)
Query: 27 TGIIPPSIGCXXXXXXXXXXXXXXSGSVPESISXXXXXXXXXXXXNRXXXXXXXXXXXXK 86
TG IPP++ SG++P S+ N K
Sbjct: 404 TGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVK 463
Query: 87 NINQLLMHTNQFTGVIPDSFTNLTNLVRLDLHCNYLNGYIPEKIGELQLLEQLDFSNNLL 146
+ L++ N TG IP +N TNL + L N L G IP+ IG L+ L L SNN
Sbjct: 464 TLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSF 523
Query: 147 RGKLPPSLCNLTVISVLYLDNNKLEGAIP---FPSSPGQMPS------------------ 185
G +P L + + L L+ N G IP F S G++ +
Sbjct: 524 SGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQS-GKIAANFIAGKRYVYIKNDGMKK 582
Query: 186 -----------LGFLRLQDNNLT-------------GKIPPTFGYLASLRRVSLANNKLE 221
G Q N L+ G PTF S+ + ++ N L
Sbjct: 583 ECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLS 642
Query: 222 GAIPTSLGNLQDLTELYLNGNQLSGQIPKXXXXXXXXXXXXXXRNQIEGPLPSGMFSL 279
G IP +G++ L L L N +SG IP N+++G +P M +L
Sbjct: 643 GYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSAL 700
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 59/248 (23%), Positives = 97/248 (39%), Gaps = 30/248 (12%)
Query: 51 SGSVPESISXXXXXXXXXXXXNRXXXXXXXXXXXXKNINQLLMHTNQFTGVIPDSFTNLT 110
+G +P +S NR +N+ L + N F+G IP +
Sbjct: 476 TGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCR 535
Query: 111 NLVRLDLHCNYLNGYIPEKIGELQLLEQLDFSNNLLRGKLPPSLCNLTVISVLYLDNNKL 170
+L+ LDL+ N NG IP + + + + N + GK + N + + N L
Sbjct: 536 SLIWLDLNTNLFNGTIPAAMFK----QSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLL 591
Query: 171 E-------------------------GAIPFPSSPGQMPSLGFLRLQDNNLTGKIPPTFG 205
E G P+ S+ FL + N L+G IP G
Sbjct: 592 EFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNN-GSMMFLDMSYNMLSGYIPKEIG 650
Query: 206 YLASLRRVSLANNKLEGAIPTSLGNLQDLTELYLNGNQLSGQIPKXXXXXXXXXXXXXXR 265
+ L ++L +N + G+IP +G+L+ L L L+ N+L G+IP+
Sbjct: 651 SMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSN 710
Query: 266 NQIEGPLP 273
N + GP+P
Sbjct: 711 NNLSGPIP 718
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 121 bits (303), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 104/337 (30%), Positives = 145/337 (43%), Gaps = 25/337 (7%)
Query: 88 INQLLMHTNQFTGVIPDSFTNLTNLVRLDLHCNYLNGYIPEKIGELQLLEQLDFSNNLLR 147
+ +L + N FTG IP + +N + LV L L NYL+G IP +G L L L N+L
Sbjct: 396 LQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLE 455
Query: 148 GKLPPSLCNLTVISVLYLDNNKLEGAIPFPSSPGQMPSLGFLRLQDNNLTGKIPPTFGYL 207
G++P L + + L LD N L G I PS +L ++ L +N LTG+IP G L
Sbjct: 456 GEIPQELMYVKTLETLILDFNDLTGEI--PSGLSNCTNLNWISLSNNRLTGEIPKWIGRL 513
Query: 208 ASLRRVSLANNKLEGAIPTSLGNLQDLTELYLNGNQLSGQIPKXXXXXXXXXXXXXXRNQ 267
+L + L+NN G IP LG+ + L L LN N +G IP +
Sbjct: 514 ENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPA---------AMFKQSGK 564
Query: 268 IEGPLPSGMFSLQXXXXXXXXXXXXXXXXIPMWMAELPSLSRVYLAG-CGIKGKI----- 321
I +G + + L+R+ C I ++
Sbjct: 565 IAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHT 624
Query: 322 -PEFFRTTPSPLQELDLSVNHLSGSIPAWIGSLTQXXXXXXXXXXXXXXIPETITNLQDL 380
P F + LD+S N LSG IP IGS+ IP+ + +L+ L
Sbjct: 625 SPTF--DNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGL 682
Query: 381 VLLDLHSNKLTGSISQVFKIGQRFPDGSLTYIDLSDN 417
+LDL SNKL G I Q LT IDLS+N
Sbjct: 683 NILDLSSNKLDGRIPQAMSALTM-----LTEIDLSNN 714
Score = 120 bits (301), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 136/513 (26%), Positives = 194/513 (37%), Gaps = 83/513 (16%)
Query: 86 KNINQLLMHTNQFTGVIPDSFTNLTN-LVRLDLHCNYLNGYIPEKIG------------- 131
K++ L + N+FTG IPD + + L LDL N+ G +P G
Sbjct: 269 KSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSN 328
Query: 132 ------------ELQLLEQLDFSNNLLRGKLPPSLCNLTVISVLYLD--NNKLEGAIPFP 177
+++ L+ LD S N G+LP SL NL+ S+L LD +N G I
Sbjct: 329 NFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSA-SLLTLDLSSNNFSGPILPN 387
Query: 178 SSPGQMPSLGFLRLQDNNLTGKIPPTFGYLASLRRVSLANNKLEGAIPTSLGNLQDLTEL 237
+L L LQ+N TGKIPPT + L + L+ N L G IP+SLG+L L +L
Sbjct: 388 LCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDL 447
Query: 238 YLNGNQLSGQIPKXXXXXXXXXXXXXXRNQIEGPLPSGMFSLQXXXXXXXXXXXXXXXXI 297
L N L G+IP+ N + G +PSG+ S I
Sbjct: 448 KLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGL-SNCTNLNWISLSNNRLTGEI 506
Query: 298 PMWMAELPSLSRVYLAGCGIKGKIPEFFRTTPSPLQELDLSVNHLSGSIPAWIGSLTQXX 357
P W+ L +L+ + L+ G IP S L LDL+ N +G+IPA + +
Sbjct: 507 PKWIGRLENLAILKLSNNSFSGNIPAELGDCRS-LIWLDLNTNLFNGTIPAAMFKQSGKI 565
Query: 358 XXXXXXXXXXXXIP----------------------ETITNLQDLVLLDLHSNKLTGSIS 395
I E + L ++ S G S
Sbjct: 566 AANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTS 625
Query: 396 QVFKIGQRFPDGSLTYIDLSDNXXXXXXXXXXXXXXXXXXXXNLSRNVLEGQIPVSVGXX 455
F +GS+ ++D+S N +L G IP +G
Sbjct: 626 PTFD-----NNGSMMFLDMSYN-------------------------MLSGYIPKEIGSM 655
Query: 456 XXXXXXXXXYNKLGYVLPGSLANESSLETLKLQNNRFTGRIPSEYXXXXXXXXXXXSHNL 515
+N + +P + + L L L +N+ GRIP S+N
Sbjct: 656 PYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNN 715
Query: 516 LVGEIPAGKPLSDFPESSFSGNRGLCGKPLTAC 548
L G IP FP + F N GLCG PL C
Sbjct: 716 LSGPIPEMGQFETFPPAKFLNNPGLCGYPLPRC 748
Score = 94.7 bits (234), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 111/415 (26%), Positives = 166/415 (40%), Gaps = 42/415 (10%)
Query: 88 INQLLMHTNQFTGVIPDSFTNLTNLVRLDLHCNYLNGYIPEKIGELQLLEQLDFSNNLLR 147
+ L + N+ +G + + NL LD+ N + IP +G+ L+ LD S N L
Sbjct: 180 LKHLAISGNKISGDV--DVSRCVNLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLS 236
Query: 148 GKLPPSLCNLTVISVLYLDNNKLEGAIPFPSSPGQMPSLGFLRLQDNNLTGKIPPTF-GY 206
G ++ T + +L + +N+ G IP P + SL +L L +N TG+IP G
Sbjct: 237 GDFSRAISTCTELKLLNISSNQFVGPIP----PLPLKSLQYLSLAENKFTGEIPDFLSGA 292
Query: 207 LASLRRVSLANNKLEGAIPTSLGNLQDLTELYLNGNQLSGQIPKXXXXXXXXXXXXXXR- 265
+L + L+ N GA+P G+ L L L+ N SG++P
Sbjct: 293 CDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSF 352
Query: 266 NQIEGPLPSGMFSLQXXXXXXXXXXXXXXXXIPMWMAELP--SLSRVYLAGCGIKGKIPE 323
N+ G LP + +L I + + P +L +YL G GKIP
Sbjct: 353 NEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPP 412
Query: 324 FFRTTPSPLQELDLSVNHLSGSIPAWIGSLTQXXXXXXXXXXXXXXIPETITNLQDLVLL 383
S L L LS N+LSG+IP+ +GSL++ IP+ + ++ L L
Sbjct: 413 TLSNC-SELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETL 471
Query: 384 DLHSNKLTGSISQVFKIGQRFPDGSLTYIDLSDNXXXXXXXXXXXXXXXXXXXXNLSRNV 443
L N LTG I P G +L+ +LS N
Sbjct: 472 ILDFNDLTGEI----------PSGLSNCTNLN--------------------WISLSNNR 501
Query: 444 LEGQIPVSVGXXXXXXXXXXXYNKLGYVLPGSLANESSLETLKLQNNRFTGRIPS 498
L G+IP +G N +P L + SL L L N F G IP+
Sbjct: 502 LTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPA 556
Score = 73.6 bits (179), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 117/448 (26%), Positives = 168/448 (37%), Gaps = 68/448 (15%)
Query: 106 FTNLTNLVRLDLHCNYLNGYIPE--KIGELQLLEQLDFSNNLLR--GKLPPSLCNLTVIS 161
F +L LDL N L+G + +G L+ L+ S+N L GK+ L L +
Sbjct: 96 FKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGL-KLNSLE 154
Query: 162 VLYLDNNKLEGA--IPFPSSPGQMPSLGFLRLQDNNLTGKIPPTFGYLASLRRVSLANNK 219
VL L N + GA + + S G L L + N ++G + + +L + +++N
Sbjct: 155 VLDLSANSISGANVVGWVLSDG-CGELKHLAISGNKISGDVDVS--RCVNLEFLDVSSNN 211
Query: 220 LEGAIPTSLGNLQDLTELYLNGNQLSGQIPKXXXXXXXXXXXXXXRNQIEGPLPSGMFSL 279
IP LG+ L L ++GN+LSG + NQ GP+P
Sbjct: 212 FSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIP------ 264
Query: 280 QXXXXXXXXXXXXXXXXIPMWMAELPSLSRVYLAGCGIKGKIPEFFRTTPSPLQELDLSV 339
P+ L SL + LA G+IP+F L LDLS
Sbjct: 265 ------------------PL---PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSG 303
Query: 340 NHLSGSIPAWIG-------------------------SLTQXXXXXXXXXXXXXXIPETI 374
NH G++P + G + +PE++
Sbjct: 304 NHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESL 363
Query: 375 TNLQ-DLVLLDLHSNKLTGSISQVFKIGQRFPDGSLTYIDLSDNXXXXXXXXXXXXXXXX 433
TNL L+ LDL SN +G I + + Q P +L + L +N
Sbjct: 364 TNLSASLLTLDLSSNNFSGPI--LPNLCQN-PKNTLQELYLQNNGFTGKIPPTLSNCSEL 420
Query: 434 XXXXNLSRNVLEGQIPVSVGXXXXXXXXXXXYNKLGYVLPGSLANESSLETLKLQNNRFT 493
+LS N L G IP S+G N L +P L +LETL L N T
Sbjct: 421 VSL-HLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLT 479
Query: 494 GRIPSEYXXXXXXXXXXXSHNLLVGEIP 521
G IPS S+N L GEIP
Sbjct: 480 GEIPSGLSNCTNLNWISLSNNRLTGEIP 507
Score = 68.9 bits (167), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 75/298 (25%), Positives = 108/298 (36%), Gaps = 46/298 (15%)
Query: 27 TGIIPPSIGCXXXXXXXXXXXXXXSGSVPESISXXXXXXXXXXXXNRXXXXXXXXXXXXK 86
TG IPP++ SG++P S+ N K
Sbjct: 407 TGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVK 466
Query: 87 NINQLLMHTNQFTGVIPDSFTNLTNLVRLDLHCNYLNGYIPEKIGELQLLEQLDFSNNLL 146
+ L++ N TG IP +N TNL + L N L G IP+ IG L+ L L SNN
Sbjct: 467 TLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSF 526
Query: 147 RGKLPPSLCNLTVISVLYLDNNKLEGAIP---FPSSPGQMPS------------------ 185
G +P L + + L L+ N G IP F S G++ +
Sbjct: 527 SGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQS-GKIAANFIAGKRYVYIKNDGMKK 585
Query: 186 -----------LGFLRLQDNNLT-------------GKIPPTFGYLASLRRVSLANNKLE 221
G Q N L+ G PTF S+ + ++ N L
Sbjct: 586 ECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLS 645
Query: 222 GAIPTSLGNLQDLTELYLNGNQLSGQIPKXXXXXXXXXXXXXXRNQIEGPLPSGMFSL 279
G IP +G++ L L L N +SG IP N+++G +P M +L
Sbjct: 646 GYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSAL 703
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 59/248 (23%), Positives = 97/248 (39%), Gaps = 30/248 (12%)
Query: 51 SGSVPESISXXXXXXXXXXXXNRXXXXXXXXXXXXKNINQLLMHTNQFTGVIPDSFTNLT 110
+G +P +S NR +N+ L + N F+G IP +
Sbjct: 479 TGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCR 538
Query: 111 NLVRLDLHCNYLNGYIPEKIGELQLLEQLDFSNNLLRGKLPPSLCNLTVISVLYLDNNKL 170
+L+ LDL+ N NG IP + + + + N + GK + N + + N L
Sbjct: 539 SLIWLDLNTNLFNGTIPAAMFK----QSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLL 594
Query: 171 E-------------------------GAIPFPSSPGQMPSLGFLRLQDNNLTGKIPPTFG 205
E G P+ S+ FL + N L+G IP G
Sbjct: 595 EFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNN-GSMMFLDMSYNMLSGYIPKEIG 653
Query: 206 YLASLRRVSLANNKLEGAIPTSLGNLQDLTELYLNGNQLSGQIPKXXXXXXXXXXXXXXR 265
+ L ++L +N + G+IP +G+L+ L L L+ N+L G+IP+
Sbjct: 654 SMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSN 713
Query: 266 NQIEGPLP 273
N + GP+P
Sbjct: 714 NNLSGPIP 721
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 87.0 bits (214), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 74/253 (29%), Positives = 103/253 (40%), Gaps = 34/253 (13%)
Query: 297 IPMWMAELPSLSRVYLAGCGIKGKIPEFFRTTPSPLQELDLSVNHLSGSIPAWIGSLTQX 356
IP +A+L L +Y+ + G IP+F + L LD S N LSG++P I SL
Sbjct: 93 IPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKT-LVTLDFSYNALSGTLPPSISSLPNL 151
Query: 357 XXXXXXXXXXXXXIPETITNLQDLVL-LDLHSNKLTGSISQVFKIGQRFPDGSLTYIDLS 415
IP++ + L + + N+LTG KI F + +L ++DLS
Sbjct: 152 VGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTG------KIPPTFANLNLAFVDLS 205
Query: 416 DNXXXXXXXXXXXXXXXXXXXXNLSRNVLEGQIPVSVGXXXXXXXXXXXYNKLGYVLPGS 475
RN+LEG V G N L + L G
Sbjct: 206 -------------------------RNMLEGDASVLFGSDKNTQKIHLAKNSLAFDL-GK 239
Query: 476 LANESSLETLKLQNNRFTGRIPSEYXXXXXXXXXXXSHNLLVGEIPAGKPLSDFPESSFS 535
+ +L L L+NNR G +P S N L GEIP G L F S+++
Sbjct: 240 VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYA 299
Query: 536 GNRGLCGKPLTAC 548
N+ LCG PL AC
Sbjct: 300 NNKCLCGSPLPAC 312
Score = 80.1 bits (196), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 63/186 (33%), Positives = 93/186 (50%), Gaps = 5/186 (2%)
Query: 96 NQFTGVIPDSFTNLTNLVRLDLHCNYLNGYIPEKIGELQLLEQLDFSNNLLRGKLPPSLC 155
N G IP + LT L L + ++G IP+ + +++ L LDFS N L G LPPS+
Sbjct: 87 NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSIS 146
Query: 156 NLTVISVLYLDNNKLEGAIPFPSSPGQMPSL-GFLRLQDNNLTGKIPPTFGYLASLRRVS 214
+L + + D N++ GAI P S G L + + N LTGKIPPTF L +L V
Sbjct: 147 SLPNLVGITFDGNRISGAI--PDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVD 203
Query: 215 LANNKLEGAIPTSLGNLQDLTELYLNGNQLSGQIPKXXXXXXXXXXXXXXRNQIEGPLPS 274
L+ N LEG G+ ++ +++L N L+ + K N+I G LP
Sbjct: 204 LSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQ 262
Query: 275 GMFSLQ 280
G+ L+
Sbjct: 263 GLTQLK 268
Score = 37.0 bits (84), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 51/173 (29%), Positives = 73/173 (42%), Gaps = 12/173 (6%)
Query: 51 SGSVPESISXXXXXXXXXXXXNRXXXXX-XXXXXXXKNINQLLMHTNQFTGVIPDSFTNL 109
SG++P SIS NR K + + N+ TG IP +F NL
Sbjct: 138 SGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL 197
Query: 110 TNLVRLDLHCNYLNGYIPEKIGELQLLEQLDFSNNLLR---GKLPPSLCNLTVISVLYLD 166
NL +DL N L G G + +++ + N L GK+ S ++ L L
Sbjct: 198 -NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLS----KNLNGLDLR 252
Query: 167 NNKLEGAIPFPSSPGQMPSLGFLRLQDNNLTGKIPPTFGYLASLRRVSLANNK 219
NN++ G + P Q+ L L + NNL G+IP G L + ANNK
Sbjct: 253 NNRIYGTL--PQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNK 302
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/165 (31%), Positives = 74/165 (44%), Gaps = 9/165 (5%)
Query: 90 QLLMHTNQFTGVIPDSFTNLTNLVRLDLHCNYLNGYIPEKIGELQLLEQLDFSNNL-LRG 148
++ +H N+ + V SF + NL L LH N L G L LLEQLD S+N LR
Sbjct: 35 RIFLHGNRISYVPAASFQSCRNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLRV 94
Query: 149 KLPPSLCNLTVISVLYLDNNKLEGAIPFPSSPG---QMPSLGFLRLQDNNLTGKIPPTFG 205
P + L + L+LD L+ PG + +L +L LQDNNL TF
Sbjct: 95 VDPTTFRGLGHLHTLHLDRCGLQEL-----GPGLFRGLAALQYLYLQDNNLQALPDNTFR 149
Query: 206 YLASLRRVSLANNKLEGAIPTSLGNLQDLTELYLNGNQLSGQIPK 250
L +L + L N++ + L L L L+ N ++ P
Sbjct: 150 DLGNLTHLFLHGNRIPSVPEHAFRGLHSLDRLLLHQNHVARVHPH 194
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 49/161 (30%), Positives = 70/161 (43%), Gaps = 3/161 (1%)
Query: 86 KNINQLLMHTNQFTGVIPDSFTNLTNLVRLDLHCNY-LNGYIPEKIGELQLLEQLDFSNN 144
+N+ L +H+N G+ +FT LT L +LDL N L P L L L
Sbjct: 55 RNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLRVVDPTTFRGLGHLHTLHLDRC 114
Query: 145 LLRGKLPPSLCNLTVISVLYLDNNKLEGAIPFPSSPGQMPSLGFLRLQDNNLTGKIPPTF 204
L+ P L + LYL +N L+ A+P ++ + +L L L N + F
Sbjct: 115 GLQELGPGLFRGLAALQYLYLQDNNLQ-ALP-DNTFRDLGNLTHLFLHGNRIPSVPEHAF 172
Query: 205 GYLASLRRVSLANNKLEGAIPTSLGNLQDLTELYLNGNQLS 245
L SL R+ L N + P + +L L LYL N LS
Sbjct: 173 RGLHSLDRLLLHQNHVARVHPHAFRDLGRLMTLYLFANNLS 213
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 55.5 bits (132), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 50/166 (30%), Positives = 72/166 (43%), Gaps = 9/166 (5%)
Query: 89 NQLLMHTNQFTGVIPDSFTNLTNLVRLDLHCNYLNGYIPEKIGELQLLEQLDFSNNL-LR 147
++ +H N+ + V SF NL L LH N L L LLEQLD S+N LR
Sbjct: 35 QRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLR 94
Query: 148 GKLPPSLCNLTVISVLYLDNNKLEGAIPFPSSPG---QMPSLGFLRLQDNNLTGKIPPTF 204
P + L + L+LD L+ PG + +L +L LQDN L TF
Sbjct: 95 SVDPATFHGLGRLHTLHLDRCGLQEL-----GPGLFRGLAALQYLYLQDNALQALPDDTF 149
Query: 205 GYLASLRRVSLANNKLEGAIPTSLGNLQDLTELYLNGNQLSGQIPK 250
L +L + L N++ + L L L L+ N+++ P
Sbjct: 150 RDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPH 195
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 49/176 (27%), Positives = 71/176 (40%), Gaps = 3/176 (1%)
Query: 72 NRXXXXXXXXXXXXKNINQLLMHTNQFTGVIPDSFTNLTNLVRLDLHCNY-LNGYIPEKI 130
NR +N+ L +H+N + +FT L L +LDL N L P
Sbjct: 42 NRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATF 101
Query: 131 GELQLLEQLDFSNNLLRGKLPPSLCNLTVISVLYLDNNKLEGAIPFPSSPGQMPSLGFLR 190
L L L L+ P L + LYL +N L+ A+P + + +L L
Sbjct: 102 HGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ-ALP-DDTFRDLGNLTHLF 159
Query: 191 LQDNNLTGKIPPTFGYLASLRRVSLANNKLEGAIPTSLGNLQDLTELYLNGNQLSG 246
L N ++ F L SL R+ L N++ P + +L L LYL N LS
Sbjct: 160 LHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSA 215
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 72/159 (45%), Gaps = 10/159 (6%)
Query: 88 INQLLMHTNQFTGVIPDSFTNLTNLVRLDLHCNYLNGYIPEKIGE-LQLLEQLDFSNNLL 146
+ L + N + D+F +L NL L LH N ++ +PE+ L L++L N +
Sbjct: 131 LQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISS-VPERAFRGLHSLDRLLLHQNRV 189
Query: 147 RGKLPPSLCNLTVISVLYLDNNKLEGAIPFPSSPGQMPSLGFLRLQDNNLT--GKIPPTF 204
P + +L + LYL N L A+P + + +L +LRL DN + P +
Sbjct: 190 AHVHPHAFRDLGRLMTLYLFANNLS-ALP-TEALAPLRALQYLRLNDNPWVCDCRARPLW 247
Query: 205 GYLASLRRVSLANNKLEGAIPTSLGNLQDLTELYLNGNQ 243
+L R S +++ ++P L +DL L N Q
Sbjct: 248 AWLQKFRGSS---SEVPCSLPQRLAG-RDLKRLAANDLQ 282
Score = 33.1 bits (74), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 42/84 (50%), Gaps = 4/84 (4%)
Query: 87 NINQLLMHTNQFTGVIPDSFTNLTNLVRLDLHCNYLNGYIPEKIGEL-QLLEQLDFSNNL 145
N+ L +H N+ + V +F L +L RL LH N + P +L +L+ F+NNL
Sbjct: 154 NLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNL 213
Query: 146 LRGKLP-PSLCNLTVISVLYLDNN 168
LP +L L + L L++N
Sbjct: 214 --SALPTEALAPLRALQYLRLNDN 235
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 55.5 bits (132), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 50/166 (30%), Positives = 72/166 (43%), Gaps = 9/166 (5%)
Query: 89 NQLLMHTNQFTGVIPDSFTNLTNLVRLDLHCNYLNGYIPEKIGELQLLEQLDFSNNL-LR 147
++ +H N+ + V SF NL L LH N L L LLEQLD S+N LR
Sbjct: 34 QRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLR 93
Query: 148 GKLPPSLCNLTVISVLYLDNNKLEGAIPFPSSPG---QMPSLGFLRLQDNNLTGKIPPTF 204
P + L + L+LD L+ PG + +L +L LQDN L TF
Sbjct: 94 SVDPATFHGLGRLHTLHLDRCGLQ-----ELGPGLFRGLAALQYLYLQDNALQALPDDTF 148
Query: 205 GYLASLRRVSLANNKLEGAIPTSLGNLQDLTELYLNGNQLSGQIPK 250
L +L + L N++ + L L L L+ N+++ P
Sbjct: 149 RDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPH 194
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 49/176 (27%), Positives = 71/176 (40%), Gaps = 3/176 (1%)
Query: 72 NRXXXXXXXXXXXXKNINQLLMHTNQFTGVIPDSFTNLTNLVRLDLHCNY-LNGYIPEKI 130
NR +N+ L +H+N + +FT L L +LDL N L P
Sbjct: 41 NRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATF 100
Query: 131 GELQLLEQLDFSNNLLRGKLPPSLCNLTVISVLYLDNNKLEGAIPFPSSPGQMPSLGFLR 190
L L L L+ P L + LYL +N L+ A+P + + +L L
Sbjct: 101 HGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ-ALP-DDTFRDLGNLTHLF 158
Query: 191 LQDNNLTGKIPPTFGYLASLRRVSLANNKLEGAIPTSLGNLQDLTELYLNGNQLSG 246
L N ++ F L SL R+ L N++ P + +L L LYL N LS
Sbjct: 159 LHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSA 214
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 72/159 (45%), Gaps = 10/159 (6%)
Query: 88 INQLLMHTNQFTGVIPDSFTNLTNLVRLDLHCNYLNGYIPEKIGE-LQLLEQLDFSNNLL 146
+ L + N + D+F +L NL L LH N ++ +PE+ L L++L N +
Sbjct: 130 LQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISS-VPERAFRGLHSLDRLLLHQNRV 188
Query: 147 RGKLPPSLCNLTVISVLYLDNNKLEGAIPFPSSPGQMPSLGFLRLQDNNLT--GKIPPTF 204
P + +L + LYL N L A+P + + +L +LRL DN + P +
Sbjct: 189 AHVHPHAFRDLGRLMTLYLFANNLS-ALP-TEALAPLRALQYLRLNDNPWVCDCRARPLW 246
Query: 205 GYLASLRRVSLANNKLEGAIPTSLGNLQDLTELYLNGNQ 243
+L R S +++ ++P L +DL L N Q
Sbjct: 247 AWLQKFRGSS---SEVPCSLPQRLAG-RDLKRLAANDLQ 281
Score = 33.1 bits (74), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 42/84 (50%), Gaps = 4/84 (4%)
Query: 87 NINQLLMHTNQFTGVIPDSFTNLTNLVRLDLHCNYLNGYIPEKIGEL-QLLEQLDFSNNL 145
N+ L +H N+ + V +F L +L RL LH N + P +L +L+ F+NNL
Sbjct: 153 NLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNL 212
Query: 146 LRGKLP-PSLCNLTVISVLYLDNN 168
LP +L L + L L++N
Sbjct: 213 --SALPTEALAPLRALQYLRLNDN 234
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 52.0 bits (123), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 60/179 (33%), Positives = 83/179 (46%), Gaps = 24/179 (13%)
Query: 87 NINQLLMHTNQFTGVIPDSFTNLTNLVRLDLHCNYLNGYIPEKIGELQLLEQLDFSNNLL 146
N+ L + NQ T + P NLTNL RL+L N ++ + L L+QL+FS+N +
Sbjct: 108 NLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDI--SALSGLTSLQQLNFSSNQV 163
Query: 147 RGKLPPSLCNLTVISVLYLDNNK------------LEGAIPFPSSPGQMPSLGFL-RLQD 193
P L NLT + L + +NK LE I + + LG L L +
Sbjct: 164 TDLKP--LANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDE 221
Query: 194 NNLTGKIPPTFGYLASLRRVS---LANNKLEGAIPTSLGNLQDLTELYLNGNQLSGQIP 249
+L G G LASL ++ LANN++ P L L LTEL L NQ+S P
Sbjct: 222 LSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP 278
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 60/179 (33%), Positives = 82/179 (45%), Gaps = 24/179 (13%)
Query: 87 NINQLLMHTNQFTGVIPDSFTNLTNLVRLDLHCNYLNGYIPEKIGELQLLEQLDFSNNLL 146
N+ L + NQ T + P NLTNL RL+L N ++ + L L+QL FS+N +
Sbjct: 108 NLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDI--SALSGLTSLQQLSFSSNQV 163
Query: 147 RGKLPPSLCNLTVISVLYLDNNK------------LEGAIPFPSSPGQMPSLGFL-RLQD 193
P L NLT + L + +NK LE I + + LG L L +
Sbjct: 164 TDLKP--LANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDE 221
Query: 194 NNLTGKIPPTFGYLASLRRVS---LANNKLEGAIPTSLGNLQDLTELYLNGNQLSGQIP 249
+L G G LASL ++ LANN++ P L L LTEL L NQ+S P
Sbjct: 222 LSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP 278
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 60/179 (33%), Positives = 82/179 (45%), Gaps = 24/179 (13%)
Query: 87 NINQLLMHTNQFTGVIPDSFTNLTNLVRLDLHCNYLNGYIPEKIGELQLLEQLDFSNNLL 146
N+ L + NQ T + P NLTNL RL+L N ++ + L L+QL FS+N +
Sbjct: 108 NLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDI--SALSGLTSLQQLSFSSNQV 163
Query: 147 RGKLPPSLCNLTVISVLYLDNNK------------LEGAIPFPSSPGQMPSLGFL-RLQD 193
P L NLT + L + +NK LE I + + LG L L +
Sbjct: 164 TDLKP--LANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDE 221
Query: 194 NNLTGKIPPTFGYLASLRRVS---LANNKLEGAIPTSLGNLQDLTELYLNGNQLSGQIP 249
+L G G LASL ++ LANN++ P L L LTEL L NQ+S P
Sbjct: 222 LSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP 278
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 60/179 (33%), Positives = 82/179 (45%), Gaps = 25/179 (13%)
Query: 87 NINQLLMHTNQFTGVIPDSFTNLTNLVRLDLHCNYLNGYIPEKIGELQLLEQLDFSNNLL 146
N+ L + NQ T + P NLTNL RL+L N ++ + L L+QL+F N +
Sbjct: 108 NLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDI--SALSGLTSLQQLNFGNQV- 162
Query: 147 RGKLPPSLCNLTVISVLYLDNNK------------LEGAIPFPSSPGQMPSLGFL-RLQD 193
L P L NLT + L + +NK LE I + + LG L L +
Sbjct: 163 -TDLKP-LANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDE 220
Query: 194 NNLTGKIPPTFGYLASLRRVS---LANNKLEGAIPTSLGNLQDLTELYLNGNQLSGQIP 249
+L G G LASL ++ LANN++ P L L LTEL L NQ+S P
Sbjct: 221 LSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP 277
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 60/179 (33%), Positives = 82/179 (45%), Gaps = 25/179 (13%)
Query: 87 NINQLLMHTNQFTGVIPDSFTNLTNLVRLDLHCNYLNGYIPEKIGELQLLEQLDFSNNLL 146
N+ L + NQ T + P NLTNL RL+L N ++ + L L+QL+F N +
Sbjct: 108 NLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDI--SALSGLTSLQQLNFGNQV- 162
Query: 147 RGKLPPSLCNLTVISVLYLDNNK------------LEGAIPFPSSPGQMPSLGFL-RLQD 193
L P L NLT + L + +NK LE I + + LG L L +
Sbjct: 163 -TDLKP-LANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDE 220
Query: 194 NNLTGKIPPTFGYLASLRRVS---LANNKLEGAIPTSLGNLQDLTELYLNGNQLSGQIP 249
+L G G LASL ++ LANN++ P L L LTEL L NQ+S P
Sbjct: 221 LSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP 277
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 60/179 (33%), Positives = 81/179 (45%), Gaps = 25/179 (13%)
Query: 87 NINQLLMHTNQFTGVIPDSFTNLTNLVRLDLHCNYLNGYIPEKIGELQLLEQLDFSNNLL 146
N+ L + NQ T + P NLTNL RL+L N ++ + L L+QL F N +
Sbjct: 112 NLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDI--SALSGLTSLQQLSFGNQV- 166
Query: 147 RGKLPPSLCNLTVISVLYLDNNK------------LEGAIPFPSSPGQMPSLGFL-RLQD 193
L P L NLT + L + +NK LE I + + LG L L +
Sbjct: 167 -TDLKP-LANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDE 224
Query: 194 NNLTGKIPPTFGYLASLRRVS---LANNKLEGAIPTSLGNLQDLTELYLNGNQLSGQIP 249
+L G G LASL ++ LANN++ P L L LTEL L NQ+S P
Sbjct: 225 LSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP 281
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 60/179 (33%), Positives = 81/179 (45%), Gaps = 25/179 (13%)
Query: 87 NINQLLMHTNQFTGVIPDSFTNLTNLVRLDLHCNYLNGYIPEKIGELQLLEQLDFSNNLL 146
N+ L + NQ T + P NLTNL RL+L N ++ + L L+QL F N +
Sbjct: 113 NLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDI--SALSGLTSLQQLSFGNQV- 167
Query: 147 RGKLPPSLCNLTVISVLYLDNNK------------LEGAIPFPSSPGQMPSLGFL-RLQD 193
L P L NLT + L + +NK LE I + + LG L L +
Sbjct: 168 -TDLKP-LANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDE 225
Query: 194 NNLTGKIPPTFGYLASLRRVS---LANNKLEGAIPTSLGNLQDLTELYLNGNQLSGQIP 249
+L G G LASL ++ LANN++ P L L LTEL L NQ+S P
Sbjct: 226 LSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP 282
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 47/160 (29%), Positives = 77/160 (48%), Gaps = 4/160 (2%)
Query: 87 NINQLLMHTNQFTGVIPDSFTNLTNLVRLDLHCNYLNGYIPEKIGELQLLEQLDFSNNLL 146
+ +L + +N+ + + +F LT L L L+ N L EL+ LE L ++N L
Sbjct: 38 DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKL 97
Query: 147 RGKLPPSLCN-LTVISVLYLDNNKLEGAIPFPSSPGQMPSLGFLRLQDNNLTGKIPPTFG 205
+ LP + + L ++ L LD N+L+ ++P P + L +L L N L F
Sbjct: 98 QA-LPIGVFDQLVNLAELRLDRNQLK-SLP-PRVFDSLTKLTYLSLGYNELQSLPKGVFD 154
Query: 206 YLASLRRVSLANNKLEGAIPTSLGNLQDLTELYLNGNQLS 245
L SL+ + L NN+L+ + L +L L L+ NQL
Sbjct: 155 KLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLK 194
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 69/166 (41%), Gaps = 5/166 (3%)
Query: 114 RLDLHCNYLNGYIPEKIGELQLLEQLDFSNNLLRGKLPPSLCN-LTVISVLYLDNNKLEG 172
+LDL N L+ + L L L ++N L+ LP + L + L++ +NKL+
Sbjct: 41 KLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQT-LPAGIFKELKNLETLWVTDNKLQ- 98
Query: 173 AIPFPSSPGQMPSLGFLRLQDNNLTGKIPPTFGYLASLRRVSLANNKLEGAIPTSLGNLQ 232
A+P Q+ +L LRL N L P F L L +SL N+L+ L
Sbjct: 99 ALPI-GVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLT 157
Query: 233 DLTELYLNGNQLSGQIPKXXXXXXXXXXXXXXRNQIEGPLPSGMFS 278
L EL L NQL ++P+ N +P G F
Sbjct: 158 SLKELRLYNNQLK-RVPEGAFDKLTELKTLKLDNNQLKRVPEGAFD 202
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 52/112 (46%), Gaps = 10/112 (8%)
Query: 87 NINQLLMHTNQFTGVIPDSFTNLTNLVRLDLHCNYLNGYIPEKIGELQLLEQLDFSNNLL 146
N+ +L + NQ + P F +LT L L L N L +L L++L NN L
Sbjct: 110 NLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQL 169
Query: 147 RGKLPPSLCNLTVISVLYLDNNKL----EGAIPFPSSPGQMPSLGFLRLQDN 194
+ + LT + L LDNN+L EGA F S + L L+LQ+N
Sbjct: 170 KRVPEGAFDKLTELKTLKLDNNQLKRVPEGA--FDS----LEKLKMLQLQEN 215
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 55/115 (47%), Gaps = 5/115 (4%)
Query: 137 EQLDFSNNLLRGKLPPSLCNLTVISVLYLDNNKLEGAIPFPSSP-GQMPSLGFLRLQDNN 195
++LD +N L + LT + +LYL++NKL+ P+ ++ +L L + DN
Sbjct: 40 KKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ---TLPAGIFKELKNLETLWVTDNK 96
Query: 196 LTGKIPPTFGYLASLRRVSLANNKLEGAIPTSLGNLQDLTELYLNGNQLSGQIPK 250
L F L +L + L N+L+ P +L LT L L N+L +PK
Sbjct: 97 LQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQS-LPK 150
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 80/180 (44%), Gaps = 24/180 (13%)
Query: 86 KNINQLLMHTNQFTGVIPDSFTNLTNLVRLDLHCNYLNGYIPEKIGELQLLEQLDFSNNL 145
KN++ L++ N+ + + P +F L L RL L N L +PEK+ + L++L N
Sbjct: 76 KNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKE-LPEKMP--KTLQELRVHENE 132
Query: 146 LRGKLPPSLCNLTVISVLYLDNNKLEGAIPFPSSPGQMPSLGFLRLQDNNLTG---KIPP 202
+ L + V+ L N L+ + + M L ++R+ D N+T +PP
Sbjct: 133 ITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPP 192
Query: 203 TFGYL------------ASLR------RVSLANNKLEGAIPTSLGNLQDLTELYLNGNQL 244
+ L ASL+ ++ L+ N + SL N L EL+LN N+L
Sbjct: 193 SLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKL 252
Score = 35.8 bits (81), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 39/91 (42%), Gaps = 8/91 (8%)
Query: 155 CNLTVISVLYLDNNKLEGAIPFPSSPGQMPSLGFLRLQDNNLTGKIPPTFGYLASLRRVS 214
C+L V+ L K+ +P P L LQ+N +T F L +L +
Sbjct: 31 CHLRVVQCSDLGLEKVPKDLP--------PDTALLDLQNNKITEIKDGDFKNLKNLHTLI 82
Query: 215 LANNKLEGAIPTSLGNLQDLTELYLNGNQLS 245
L NNK+ P + L L LYL+ NQL
Sbjct: 83 LINNKISKISPGAFAPLVKLERLYLSKNQLK 113
Score = 33.5 bits (75), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 39/85 (45%), Gaps = 1/85 (1%)
Query: 88 INQLLMHTNQFTGVIPDSFTNLTNLVRLDLHCNYLNGYIPEKIGELQLLEQLDFSNNLLR 147
+ +L + N+ T V S L NL +L L N ++ + L +L +NN L
Sbjct: 194 LTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV 253
Query: 148 GKLPPSLCNLTVISVLYLDNNKLEG 172
K+P L + I V+YL NN +
Sbjct: 254 -KVPGGLADHKYIQVVYLHNNNISA 277
Score = 29.3 bits (64), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 60/155 (38%), Gaps = 30/155 (19%)
Query: 115 LDLHCNYLNGYIPEKIGELQLLEQLDFSNNLLRGKLPPSLCNLTVISVLYLDNNKLEGAI 174
LDL N + L+ L L NN + P + L + LYL N+L+
Sbjct: 57 LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK--- 113
Query: 175 PFPSSPGQMP-SLGFLRLQDNNLTGKIPPTFGYLASLRRVSLANNKL----------EGA 223
P +MP +L LR+ +N +T F L + V L N L +G
Sbjct: 114 ---ELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGM 170
Query: 224 IPTSLGNLQD-------------LTELYLNGNQLS 245
S + D LTEL+L+GN+++
Sbjct: 171 KKLSYIRIADTNITTIPQGLPPSLTELHLDGNKIT 205
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 80/180 (44%), Gaps = 24/180 (13%)
Query: 86 KNINQLLMHTNQFTGVIPDSFTNLTNLVRLDLHCNYLNGYIPEKIGELQLLEQLDFSNNL 145
KN++ L++ N+ + + P +F L L RL L N L +PEK+ + L++L N
Sbjct: 76 KNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKE-LPEKMP--KTLQELRVHENE 132
Query: 146 LRGKLPPSLCNLTVISVLYLDNNKLEGAIPFPSSPGQMPSLGFLRLQDNNLTG---KIPP 202
+ L + V+ L N L+ + + M L ++R+ D N+T +PP
Sbjct: 133 ITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPP 192
Query: 203 TFGYL------------ASLR------RVSLANNKLEGAIPTSLGNLQDLTELYLNGNQL 244
+ L ASL+ ++ L+ N + SL N L EL+LN N+L
Sbjct: 193 SLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKL 252
Score = 35.8 bits (81), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 39/91 (42%), Gaps = 8/91 (8%)
Query: 155 CNLTVISVLYLDNNKLEGAIPFPSSPGQMPSLGFLRLQDNNLTGKIPPTFGYLASLRRVS 214
C+L V+ L K+ +P P L LQ+N +T F L +L +
Sbjct: 31 CHLRVVQCSDLGLEKVPKDLP--------PDTALLDLQNNKITEIKDGDFKNLKNLHTLI 82
Query: 215 LANNKLEGAIPTSLGNLQDLTELYLNGNQLS 245
L NNK+ P + L L LYL+ NQL
Sbjct: 83 LINNKISKISPGAFAPLVKLERLYLSKNQLK 113
Score = 33.5 bits (75), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 39/85 (45%), Gaps = 1/85 (1%)
Query: 88 INQLLMHTNQFTGVIPDSFTNLTNLVRLDLHCNYLNGYIPEKIGELQLLEQLDFSNNLLR 147
+ +L + N+ T V S L NL +L L N ++ + L +L +NN L
Sbjct: 194 LTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV 253
Query: 148 GKLPPSLCNLTVISVLYLDNNKLEG 172
K+P L + I V+YL NN +
Sbjct: 254 -KVPGGLADHKYIQVVYLHNNNISA 277
Score = 29.3 bits (64), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 60/155 (38%), Gaps = 30/155 (19%)
Query: 115 LDLHCNYLNGYIPEKIGELQLLEQLDFSNNLLRGKLPPSLCNLTVISVLYLDNNKLEGAI 174
LDL N + L+ L L NN + P + L + LYL N+L+
Sbjct: 57 LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK--- 113
Query: 175 PFPSSPGQMP-SLGFLRLQDNNLTGKIPPTFGYLASLRRVSLANNKL----------EGA 223
P +MP +L LR+ +N +T F L + V L N L +G
Sbjct: 114 ---ELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGM 170
Query: 224 IPTSLGNLQD-------------LTELYLNGNQLS 245
S + D LTEL+L+GN+++
Sbjct: 171 KKLSYIRIADTNITTIPQGLPPSLTELHLDGNKIT 205
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 69/148 (46%), Gaps = 3/148 (2%)
Query: 98 FTGVIPDSFTNLTNLVRLDLHCNYLNGYIPEKIGELQLLEQLDFSNNLLRGKLPPSLCNL 157
F G S T+L LDL N + +G L+ LE LDF ++ L+ S+ L
Sbjct: 361 FKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLG-LEQLEHLDFQHSNLKQMSEFSVF-L 418
Query: 158 TVISVLYLDNNKLEGAIPFPSSPGQMPSLGFLRLQDNNLTGK-IPPTFGYLASLRRVSLA 216
++ +++YLD + + F + SL L++ N+ +P F L +L + L+
Sbjct: 419 SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS 478
Query: 217 NNKLEGAIPTSLGNLQDLTELYLNGNQL 244
+LE PT+ +L L L + NQL
Sbjct: 479 QCQLEQLSPTAFNSLSSLQVLNMASNQL 506
Score = 29.6 bits (65), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Query: 130 IGELQLLEQLDFSNNLLRG-KLPPSLCNLTVISVLYLDNNKLEG 172
IG L+ L++L+ ++NL++ KLP NLT + L L +NK++
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 163
Score = 29.6 bits (65), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 37/86 (43%), Gaps = 1/86 (1%)
Query: 91 LLMHTNQFT-GVIPDSFTNLTNLVRLDLHCNYLNGYIPEKIGELQLLEQLDFSNNLLRGK 149
L M N F +PD FT L NL LDL L P L L+ L+ ++N L+
Sbjct: 450 LKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSV 509
Query: 150 LPPSLCNLTVISVLYLDNNKLEGAIP 175
LT + ++L N + + P
Sbjct: 510 PDGIFDRLTSLQKIWLHTNPWDCSCP 535
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
Length = 174
Score = 38.1 bits (87), Expect = 0.013, Method: Composition-based stats.
Identities = 25/79 (31%), Positives = 40/79 (50%)
Query: 90 QLLMHTNQFTGVIPDSFTNLTNLVRLDLHCNYLNGYIPEKIGELQLLEQLDFSNNLLRGK 149
+L ++ NQ T + P F +L NL +L + N L +L L QLD ++N L+
Sbjct: 37 RLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSI 96
Query: 150 LPPSLCNLTVISVLYLDNN 168
+ NL ++ +YL NN
Sbjct: 97 PRGAFDNLKSLTHIYLYNN 115
Score = 35.0 bits (79), Expect = 0.12, Method: Composition-based stats.
Identities = 29/79 (36%), Positives = 42/79 (53%), Gaps = 4/79 (5%)
Query: 174 IPFPSSPGQMPS-LGFLRLQDNNLTGKIPPTFGYLASLRRVSLANNKLEGAIPTSL-GNL 231
I S P +P+ L L +N +T P F +L +L+++ +NKL AIPT + L
Sbjct: 22 IRLASVPAGIPTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLT-AIPTGVFDKL 80
Query: 232 QDLTELYLNGNQLSGQIPK 250
LT+L LN N L IP+
Sbjct: 81 TQLTQLDLNDNHLK-SIPR 98
Score = 32.0 bits (71), Expect = 0.81, Method: Composition-based stats.
Identities = 18/58 (31%), Positives = 28/58 (48%)
Query: 87 NINQLLMHTNQFTGVIPDSFTNLTNLVRLDLHCNYLNGYIPEKIGELQLLEQLDFSNN 144
N+ QL ++N+ T + F LT L +LDL+ N+L L+ L + NN
Sbjct: 58 NLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNN 115
Score = 30.8 bits (68), Expect = 2.0, Method: Composition-based stats.
Identities = 26/83 (31%), Positives = 37/83 (44%), Gaps = 8/83 (9%)
Query: 163 LYLDNN---KLEGAIPFPSSPGQMPSLGFLRLQDNNLTGKIPPTFGYLASLRRVSLANNK 219
L+L+NN KLE P + +L L N LT F L L ++ L +N
Sbjct: 38 LWLNNNQITKLE-----PGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH 92
Query: 220 LEGAIPTSLGNLQDLTELYLNGN 242
L+ + NL+ LT +YL N
Sbjct: 93 LKSIPRGAFDNLKSLTHIYLYNN 115
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 37.7 bits (86), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 44/142 (30%), Positives = 63/142 (44%), Gaps = 6/142 (4%)
Query: 105 SFTNLTNLVRLDLHCNYLNGYIPEKIGELQLLEQLDFSNNLLRGKLPPSLCN-LTVISVL 163
+F LT L L+L N L +L L L +NN L LP + + LT + L
Sbjct: 54 TFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQL-ASLPLGVFDHLTQLDKL 112
Query: 164 YLDNNKLEGAIPFPSSP-GQMPSLGFLRLQDNNLTGKIPPTFGYLASLRRVSLANNKLEG 222
YL N+L+ PS ++ L LRL N L F L +L+ +SL+ N+L+
Sbjct: 113 YLGGNQLK---SLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQS 169
Query: 223 AIPTSLGNLQDLTELYLNGNQL 244
+ L L + L GNQ
Sbjct: 170 VPHGAFDRLGKLQTITLFGNQF 191
>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
Length = 178
Score = 37.4 bits (85), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 40/84 (47%)
Query: 91 LLMHTNQFTGVIPDSFTNLTNLVRLDLHCNYLNGYIPEKIGELQLLEQLDFSNNLLRGKL 150
L ++ NQ T + P F LT L RLDL N L +L L QL ++N L+
Sbjct: 43 LYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIP 102
Query: 151 PPSLCNLTVISVLYLDNNKLEGAI 174
+ NL ++ ++L NN + A
Sbjct: 103 RGAFDNLKSLTHIWLLNNPWDCAC 126
Score = 36.2 bits (82), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 45/105 (42%), Gaps = 9/105 (8%)
Query: 147 RGKLPPSLCNLTVISVLYLDNNKLEGAIPFPSSPGQMPSLG-FLRLQDNNLTGKIPPTFG 205
RG PS C+ + +V G S P +P+ L L DN +T P F
Sbjct: 7 RGSACPSQCSCSGTTV------DCSGK-SLASVPTGIPTTTQVLYLYDNQITKLEPGVFD 59
Query: 206 YLASLRRVSLANNKLEGAIPTSLGNLQDLTELYLNGNQLSGQIPK 250
L L R+ L NN+L L LT+L LN NQL IP+
Sbjct: 60 RLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKS-IPR 103
Score = 32.0 bits (71), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 42/88 (47%), Gaps = 8/88 (9%)
Query: 158 TVISVLYLDNN---KLEGAIPFPSSPGQMPSLGFLRLQDNNLTGKIPPTFGYLASLRRVS 214
T VLYL +N KLE P ++ L L L +N LT F L L ++S
Sbjct: 38 TTTQVLYLYDNQITKLE-----PGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLS 92
Query: 215 LANNKLEGAIPTSLGNLQDLTELYLNGN 242
L +N+L+ + NL+ LT ++L N
Sbjct: 93 LNDNQLKSIPRGAFDNLKSLTHIWLLNN 120
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 37.4 bits (85), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 44/142 (30%), Positives = 63/142 (44%), Gaps = 6/142 (4%)
Query: 105 SFTNLTNLVRLDLHCNYLNGYIPEKIGELQLLEQLDFSNNLLRGKLPPSLCN-LTVISVL 163
+F LT L L+L N L +L L L +NN L LP + + LT + L
Sbjct: 54 TFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQL-ASLPLGVFDHLTQLDKL 112
Query: 164 YLDNNKLEGAIPFPSSP-GQMPSLGFLRLQDNNLTGKIPPTFGYLASLRRVSLANNKLEG 222
YL N+L+ PS ++ L LRL N L F L +L+ +SL+ N+L+
Sbjct: 113 YLGGNQLK---SLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQS 169
Query: 223 AIPTSLGNLQDLTELYLNGNQL 244
+ L L + L GNQ
Sbjct: 170 VPHGAFDRLGKLQTITLFGNQF 191
>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor
Length = 170
Score = 37.0 bits (84), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 40/84 (47%)
Query: 91 LLMHTNQFTGVIPDSFTNLTNLVRLDLHCNYLNGYIPEKIGELQLLEQLDFSNNLLRGKL 150
L ++ NQ T + P F LT L RLDL N L +L L QL ++N L+
Sbjct: 35 LYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIP 94
Query: 151 PPSLCNLTVISVLYLDNNKLEGAI 174
+ NL ++ ++L NN + A
Sbjct: 95 RGAFDNLKSLTHIWLLNNPWDCAC 118
Score = 35.4 bits (80), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Query: 189 LRLQDNNLTGKIPPTFGYLASLRRVSLANNKLEGAIPTSLGNLQDLTELYLNGNQLSGQI 248
L L DN +T P F L L R+ L NN+L L LT+L LN NQL I
Sbjct: 35 LYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKS-I 93
Query: 249 PK 250
P+
Sbjct: 94 PR 95
Score = 32.0 bits (71), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 42/88 (47%), Gaps = 8/88 (9%)
Query: 158 TVISVLYLDNN---KLEGAIPFPSSPGQMPSLGFLRLQDNNLTGKIPPTFGYLASLRRVS 214
T VLYL +N KLE P ++ L L L +N LT F L L ++S
Sbjct: 30 TTTQVLYLYDNQITKLE-----PGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLS 84
Query: 215 LANNKLEGAIPTSLGNLQDLTELYLNGN 242
L +N+L+ + NL+ LT ++L N
Sbjct: 85 LNDNQLKSIPRGAFDNLKSLTHIWLLNN 112
>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 220
Score = 37.0 bits (84), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 39/72 (54%), Gaps = 2/72 (2%)
Query: 180 PGQMP-SLGFLRLQDNNLTGKIPPTFGYLASLRRVSLANNKLEGAIPTSLGNLQDLTELY 238
P +P ++ +RL+ N + P F LRR+ L+NN++ P + L+ L L
Sbjct: 27 PTNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLV 86
Query: 239 LNGNQLSGQIPK 250
L GN+++ ++PK
Sbjct: 87 LYGNKIT-ELPK 97
>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2
pdb|2V9S|B Chain B, Second Lrr Domain Of Human Slit2
pdb|2V9S|C Chain C, Second Lrr Domain Of Human Slit2
pdb|2V9S|D Chain D, Second Lrr Domain Of Human Slit2
Length = 220
Score = 37.0 bits (84), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 39/72 (54%), Gaps = 2/72 (2%)
Query: 180 PGQMP-SLGFLRLQDNNLTGKIPPTFGYLASLRRVSLANNKLEGAIPTSLGNLQDLTELY 238
P +P ++ +RL+ N + P F LRR+ L+NN++ P + L+ L L
Sbjct: 27 PTNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLV 86
Query: 239 LNGNQLSGQIPK 250
L GN+++ ++PK
Sbjct: 87 LYGNKIT-ELPK 97
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 36.2 bits (82), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 45/88 (51%), Gaps = 2/88 (2%)
Query: 87 NINQLLMHTNQFTGVIPDSFTNLTNLVRLDLHCNYLNGYIPEKI-GELQLLEQLDFSNNL 145
N+ L ++ NQ + F LTNL RLDL N L +PE + +L L+QL ++N
Sbjct: 134 NLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQS-LPEGVFDKLTQLKQLSLNDNQ 192
Query: 146 LRGKLPPSLCNLTVISVLYLDNNKLEGA 173
L+ LT ++ ++L NN + A
Sbjct: 193 LKSVPDGVFDRLTSLTHIWLLNNPWDCA 220
Score = 32.3 bits (72), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 43/138 (31%), Positives = 62/138 (44%), Gaps = 4/138 (2%)
Query: 87 NINQLLMHTNQFTGVIPDSFTNLTNLVRLDLHCNYLNGYIPEKIGELQLLEQLDFSNNLL 146
N+ L++ NQ + F LTNL L L N L +L L L +N L
Sbjct: 86 NLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLYLYHNQL 145
Query: 147 RGKLPPSLCN-LTVISVLYLDNNKLEGAIPFPSSPGQMPSLGFLRLQDNNLTGKIPPTFG 205
+ LP + + LT ++ L LDNN+L+ ++P ++ L L L DN L F
Sbjct: 146 QS-LPKGVFDKLTNLTRLDLDNNQLQ-SLP-EGVFDKLTQLKQLSLNDNQLKSVPDGVFD 202
Query: 206 YLASLRRVSLANNKLEGA 223
L SL + L NN + A
Sbjct: 203 RLTSLTHIWLLNNPWDCA 220
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 30/65 (46%)
Query: 182 QMPSLGFLRLQDNNLTGKIPPTFGYLASLRRVSLANNKLEGAIPTSLGNLQDLTELYLNG 241
++ +L +L L N L F L +L R+ L NN+L+ L L +L LN
Sbjct: 131 KLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQLKQLSLND 190
Query: 242 NQLSG 246
NQL
Sbjct: 191 NQLKS 195
>pdb|3G3B|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
Length = 170
Score = 35.8 bits (81), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Query: 189 LRLQDNNLTGKIPPTFGYLASLRRVSLANNKLEGAIPTSLGNLQDLTELYLNGNQLSGQI 248
L L DN +T P F L L R+ L NN+L L LT+L LN NQL I
Sbjct: 35 LYLYDNRITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKS-I 93
Query: 249 PK 250
P+
Sbjct: 94 PR 95
Score = 32.7 bits (73), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 41/85 (48%), Gaps = 2/85 (2%)
Query: 158 TVISVLYLDNNKLEGAIPFPSSPGQMPSLGFLRLQDNNLTGKIPPTFGYLASLRRVSLAN 217
T VLYL +N++ P ++ L L L +N LT F L L ++SL +
Sbjct: 30 TTTQVLYLYDNRITKL--EPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87
Query: 218 NKLEGAIPTSLGNLQDLTELYLNGN 242
N+L+ + NL+ LT ++L N
Sbjct: 88 NQLKSIPRGAFDNLRSLTHIWLLNN 112
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 35.4 bits (80), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 42/87 (48%), Gaps = 1/87 (1%)
Query: 163 LYLDNNKLEGAIPFPSSPGQMPSLGFLRLQDNNLTGKIPPTFGYLASLRRVSLANNKLEG 222
L L++N+L G I G++P L L L+ N LTG P F + ++ + L NK++
Sbjct: 34 LLLNDNEL-GRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKE 92
Query: 223 AIPTSLGNLQDLTELYLNGNQLSGQIP 249
L L L L NQ+S +P
Sbjct: 93 ISNKMFLGLHQLKTLNLYDNQISCVMP 119
Score = 29.3 bits (64), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 43/89 (48%), Gaps = 2/89 (2%)
Query: 130 IGELQLLEQLDFSNNLLRGKLPPSLCNLTVISVLYLDNNKLEGAIPFPSSPGQMPSLGFL 189
G L L +L+ N L G P + + I L L NK++ I G + L L
Sbjct: 50 FGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIK-EISNKMFLG-LHQLKTL 107
Query: 190 RLQDNNLTGKIPPTFGYLASLRRVSLANN 218
L DN ++ +P +F +L SL ++LA+N
Sbjct: 108 NLYDNQISCVMPGSFEHLNSLTSLNLASN 136
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 43/133 (32%), Positives = 58/133 (43%), Gaps = 3/133 (2%)
Query: 110 TNLVRLDLHCNYLNGYIPEKIGELQLLEQLDFSNNLLRGKLPPSLC---NLTVISVLYLD 166
++L +LDL N L + P + L L +N L L LC + T I L L
Sbjct: 171 SSLRKLDLSSNPLKEFSPGCFQTIGKLFALLLNNAQLNPHLTEKLCWELSNTSIQNLSLA 230
Query: 167 NNKLEGAIPFPSSPGQMPSLGFLRLQDNNLTGKIPPTFGYLASLRRVSLANNKLEGAIPT 226
NN+L S + +L L L NNL +F YL SLR +SL N ++ P
Sbjct: 231 NNQLLATSESTFSGLKWTNLTQLDLSYNNLHDVGNGSFSYLPSLRYLSLEYNNIQRLSPR 290
Query: 227 SLGNLQDLTELYL 239
S L +L L L
Sbjct: 291 SFYGLSNLRYLSL 303
Score = 32.3 bits (72), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 56/138 (40%), Gaps = 9/138 (6%)
Query: 88 INQLLMHTNQFTGVIPDSFTNL--TNLVRLDLHCNYLNGYIPEKIGELQLLEQLDFSNNL 145
I L + NQ +F+ L TNL +LDL N L+ L L L N
Sbjct: 224 IQNLSLANNQLLATSESTFSGLKWTNLTQLDLSYNNLHDVGNGSFSYLPSLRYLSLEYNN 283
Query: 146 LRGKLPPSLCNLTVISVLYLDNNKLEGAIPFPSSPG-------QMPSLGFLRLQDNNLTG 198
++ P S L+ + L L + ++ S P + L +L + DNN+
Sbjct: 284 IQRLSPRSFYGLSNLRYLSLKRAFTKQSVSLASHPNIDDFSFQWLKYLEYLNMDDNNIPS 343
Query: 199 KIPPTFGYLASLRRVSLA 216
TF L SL+ +SL+
Sbjct: 344 TKSNTFTGLVSLKYLSLS 361
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 65/157 (41%), Gaps = 8/157 (5%)
Query: 96 NQFTGVIPDSFTNLTNLVRLDLHCNYLNGYIPEKI--GELQLLEQLDFSNNLLRGKLPPS 153
N FT + + L L L L N L + + + LE LD S N L
Sbjct: 363 NVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDR 422
Query: 154 LCNLT-VISVLYLDNNKLEGAIPFPSSPGQMPSLGFLRLQDNNLTGKIPPTFGYLASLRR 212
C I VL L +N L G++ F P P + L L +N + IP +L +L+
Sbjct: 423 TCAWAESILVLNLSSNMLTGSV-FRCLP---PKVKVLDLHNNRIMS-IPKDVTHLQALQE 477
Query: 213 VSLANNKLEGAIPTSLGNLQDLTELYLNGNQLSGQIP 249
+++A+N+L+ L L ++L+ N P
Sbjct: 478 LNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 514
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 69/158 (43%), Gaps = 8/158 (5%)
Query: 96 NQFTGVIPDSFTNLTNLVRLDLHCNYLN--GYIPEKIGELQLLEQLDFSNNLLRGKLPPS 153
N T + ++ +LT L L L N L I E +++ L+QLD S N +
Sbjct: 334 NLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKG 393
Query: 154 LCNLT-VISVLYLDNNKLEGAIPFPSSPGQMPSLGFLRLQDNNLTGKIPPTFGYLASLRR 212
C+ T + L + +N L I F P P + L L N + IP L +L+
Sbjct: 394 DCSWTKSLLSLNMSSNILTDTI-FRCLP---PRIKVLDLHSNKIKS-IPKQVVKLEALQE 448
Query: 213 VSLANNKLEGAIPTSLGNLQDLTELYLNGNQLSGQIPK 250
+++A+N+L+ L L +++L+ N P+
Sbjct: 449 LNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 486
Score = 33.5 bits (75), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 62/141 (43%), Gaps = 5/141 (3%)
Query: 138 QLDFSNNLLRGKLPPSLCNLTVISVLYLDNNKLEGAIPFPSSPGQMPSLGFLRLQDNNLT 197
LDFSNNLL + + +LT + L L N+L+ QM SL L + N+++
Sbjct: 328 HLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVS 387
Query: 198 -GKIPPTFGYLASLRRVSLANNKLEGAIPTSLGNLQDLTELYLNGNQLSGQIPKXXXXXX 256
+ + SL +++++N L I L + L L+ N++ IPK
Sbjct: 388 YDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIKS-IPKQVVKLE 444
Query: 257 XXXXXXXXRNQIEGPLPSGMF 277
NQ++ +P G+F
Sbjct: 445 ALQELNVASNQLKS-VPDGIF 464
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 53/118 (44%), Gaps = 2/118 (1%)
Query: 87 NINQLLMHTNQFTGVIPDSFTNLTNLVRLDLHCNYLNGYIPEKIGELQLLEQLDFSNNLL 146
N++ LL+ N + ++F + NL LDL N+L+ +LQ LE L NN +
Sbjct: 65 NLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHI 124
Query: 147 RGKLPPSLCNLTVISVLYLDNNKLEGA-IPFPSSPGQMPSLGFLRLQDNNLTGKIPPT 203
+ ++ + LYL N++ + ++P L L L N L K+P T
Sbjct: 125 VVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKL-KKLPLT 181
Score = 33.5 bits (75), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 53/115 (46%), Gaps = 17/115 (14%)
Query: 139 LDFSNN---LLRGKLPPSLCNLTVISVLYLDNNKL-----EGAIPFPSSPGQMPSLGFLR 190
LD S+N LR + P+ LT + L L +N L E +P +P+L +L
Sbjct: 44 LDLSHNNLSRLRAEWTPT--RLTNLHSLLLSHNHLNFISSEAFVP-------VPNLRYLD 94
Query: 191 LQDNNLTGKIPPTFGYLASLRRVSLANNKLEGAIPTSLGNLQDLTELYLNGNQLS 245
L N+L F L +L + L NN + + ++ L +LYL+ NQ+S
Sbjct: 95 LSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS 149
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 67/146 (45%), Gaps = 11/146 (7%)
Query: 87 NINQLLMHTNQFTGVIPDSFTNLTNLVRLDLHCNYLNGYIPEKIGELQLLEQLDFSNNLL 146
N+ +L++ NQ + F LTNL L+L N L +L L +LD S N L
Sbjct: 110 NLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQL 169
Query: 147 RGKLPPSLCN-LTVISVLYLDNNKLEGAIPFPSSPGQMPSLGFLRLQDNNLTGKIPPTFG 205
+ LP + + LT + L L N+L+ ++P ++ SL ++ L DN P
Sbjct: 170 QS-LPEGVFDKLTQLKDLRLYQNQLK-SVP-DGVFDRLTSLQYIWLHDNPWDCTCP---- 222
Query: 206 YLASLRRVSLANNKLEGAIPTSLGNL 231
+R +S NK G + S G++
Sbjct: 223 ---GIRYLSEWINKHSGVVRNSAGSV 245
Score = 29.3 bits (64), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 63/140 (45%), Gaps = 4/140 (2%)
Query: 87 NINQLLMHTNQFTGVIPDSFTNLTNLVRLDLHCNYLNGYIPEKIGELQLLEQLDFSNNLL 146
N+ L++ NQ + F LTNL L L N L +L L L+ ++N L
Sbjct: 86 NLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQL 145
Query: 147 RGKLPPSLCN-LTVISVLYLDNNKLEGAIPFPSSPGQMPSLGFLRLQDNNLTGKIPPTFG 205
+ LP + + LT ++ L L N+L+ ++P ++ L LRL N L F
Sbjct: 146 QS-LPKGVFDKLTNLTELDLSYNQLQ-SLP-EGVFDKLTQLKDLRLYQNQLKSVPDGVFD 202
Query: 206 YLASLRRVSLANNKLEGAIP 225
L SL+ + L +N + P
Sbjct: 203 RLTSLQYIWLHDNPWDCTCP 222
Score = 28.5 bits (62), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 57/127 (44%), Gaps = 5/127 (3%)
Query: 153 SLCNLTVISVLYLDNNKLEGAIPFPSSP-GQMPSLGFLRLQDNNLTGKIPPTFGYLASLR 211
+L LT ++ L L N+L+ P+ ++ +L L L +N L F L +L
Sbjct: 80 ALKELTNLTYLILTGNQLQS---LPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLT 136
Query: 212 RVSLANNKLEGAIPTSLGNLQDLTELYLNGNQLSGQIPKXXXXXXXXXXXXXXRNQIEGP 271
++LA+N+L+ L +LTEL L+ NQL +NQ++
Sbjct: 137 YLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKS- 195
Query: 272 LPSGMFS 278
+P G+F
Sbjct: 196 VPDGVFD 202
>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
pdb|4FHO|B Chain B, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
Length = 231
Score = 33.5 bits (75), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 61/130 (46%), Gaps = 12/130 (9%)
Query: 86 KNINQLLMHTNQFTGVIPDSFTNLTNLVRLDLHCNYLNGYIPEKIGELQLLEQLDFSNNL 145
++I L + + Q T V P L+NL L L N + P + L L+ L NN
Sbjct: 113 QSIKTLDLTSTQITDVTP--LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNNQ 168
Query: 146 LRGKLPPSLCNLTVISVLYLDNNKLEGAIPFPSSPGQMPSLGFLRLQDNNLTGKIPPTFG 205
+ P L NL+ ++ L D+NK+ P S +P+L + L+DN ++ P
Sbjct: 169 VNDLTP--LANLSKLTTLRADDNKISDISPLAS----LPNLIEVHLKDNQISDVSP--LA 220
Query: 206 YLASLRRVSL 215
L++L V+L
Sbjct: 221 NLSNLFIVTL 230
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 33.5 bits (75), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 51/164 (31%), Positives = 76/164 (46%), Gaps = 5/164 (3%)
Query: 87 NINQLLMHTNQFTGVIPDSFTNLTNLVRLDLHCNYLNGYIPEKIGELQLLEQLDFSNNLL 146
N L +H NQ + +SF +L +L L L N++ L L L+ +N L
Sbjct: 65 NTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRL 124
Query: 147 RGKLPPSLCNLTVISVLYLDNNKLEGAIPFPSSPGQMPSLGFLRLQDNNLTGKIPP-TFG 205
+ L+ + L+L NN +E +IP + ++PSL L L + I F
Sbjct: 125 TTIPNGAFVYLSKLKELWLRNNPIE-SIP-SYAFNRIPSLRRLDLGELKRLSYISEGAFE 182
Query: 206 YLASLRRVSLANNKLEGAIPTSLGNLQDLTELYLNGNQLSGQIP 249
L++LR ++LA L IP +L L L EL L+GN LS P
Sbjct: 183 GLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSAIRP 224
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 52/205 (25%), Positives = 72/205 (35%), Gaps = 5/205 (2%)
Query: 188 FLRLQDNNLTGKIPPTFGYLASLRRVSLANNKLEGAIPTSLGNLQDLTELYLNGNQLSGQ 247
L L +N + +F +L L + L+ N + + L +L L L N+L+
Sbjct: 68 LLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLT-T 126
Query: 248 IPKXXXXXXXXXXXXXXRNQIEGPLPSGMFSLQXXXXXXXXXXXXXXXXIPMWMAE-LPS 306
IP RN +PS F+ I E L +
Sbjct: 127 IPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSN 186
Query: 307 LSRVYLAGCGIKGKIPEFFRTTPSPLQELDLSVNHLSGSIPAWIGSLTQXXXXXXXXXXX 366
L + LA C ++ +IP T L ELDLS NHLS P L
Sbjct: 187 LRYLNLAMCNLR-EIPNL--TPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQI 243
Query: 367 XXXIPETITNLQDLVLLDLHSNKLT 391
NLQ LV ++L N LT
Sbjct: 244 QVIERNAFDNLQSLVEINLAHNNLT 268
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 33.1 bits (74), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 183 MPSLGFLRLQDNNLTGKIPPTFGYLASLRRVSLANNKLEGAIPTSLGN 230
+PSL L L DN LT F YL+ LR + L NN +E +IP+ N
Sbjct: 82 LPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIE-SIPSYAFN 128
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 33.1 bits (74), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 57/141 (40%), Gaps = 7/141 (4%)
Query: 134 QLLEQLDFSNNLLRGKLPPSLCNLTVISVLYLDNNKLEGAIPFPSSPGQMPSLGFLRLQD 193
QL LD SN L + ++ ++ LYL+ N L P+ + +L L L
Sbjct: 224 QLWHALDLSN-LQIFNISANIFKYDFLTRLYLNGNSL---TELPAEIKNLSNLRVLDLSH 279
Query: 194 NNLTGKIPPTFGYLASLRRVSLANNKLEGAIPTSLGNLQDLTELYLNGNQLSGQIPKXXX 253
N LT +P G L+ +N + +P GNL +L L + GN L Q K
Sbjct: 280 NRLTS-LPAELGSCFQLKYFYFFDN-MVTTLPWEFGNLCNLQFLGVEGNPLEKQFLKILT 337
Query: 254 XXXXXXXXXXXR-NQIEGPLP 273
R N+ E PLP
Sbjct: 338 EKSVTGLIFYLRDNRPEIPLP 358
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 33.1 bits (74), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 183 MPSLGFLRLQDNNLTGKIPPTFGYLASLRRVSLANNKLEGAIPT 226
+PSL L L DN LT F YL+ LR + L NN +E +IP+
Sbjct: 82 LPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIE-SIPS 124
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 33.1 bits (74), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 58/132 (43%), Gaps = 13/132 (9%)
Query: 102 IPDSFTNLTNLVRLDLHCNYLNGYIPEKIGELQLLEQLDFS-NNLLRGKLPPSLC--NLT 158
+PD FT L NL LDL L P L L+ L+ S NN P C +L
Sbjct: 167 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQ 226
Query: 159 VI--SVLYLDNNKLEGAIPFPSSPGQMPSLGFLRLQDNNL--TGKIPPTFGYLASLRRVS 214
V+ S+ ++ +K + FPS SL FL L N+ T + ++ R++
Sbjct: 227 VLDYSLNHIMTSKKQELQHFPS------SLAFLNLTQNDFACTCEHQSFLQWIKDQRQLL 280
Query: 215 LANNKLEGAIPT 226
+ ++E A P+
Sbjct: 281 VEVERMECATPS 292
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 32.3 bits (72), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 3/70 (4%)
Query: 178 SSPGQMPS-LGFLRLQDNNLTGKIPPTFGYLASLRRVSLANNKLEGAIPTSL-GNLQDLT 235
S P +P+ L L DN +T P F L +L+ + L +N+L GA+P + +L LT
Sbjct: 33 SVPAGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQL-GALPVGVFDSLTQLT 91
Query: 236 ELYLNGNQLS 245
L L NQL+
Sbjct: 92 VLDLGTNQLT 101
Score = 32.0 bits (71), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 65/157 (41%), Gaps = 29/157 (18%)
Query: 87 NINQLLMHTNQFTGVIPDSFTNLTNLVRLDLHCNYLNGYIPEKIGELQLLEQLDFSNNLL 146
N L +H NQ T + P F +L NL L L N L G +P + +
Sbjct: 41 NAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQL-GALPVGVFD-------------- 85
Query: 147 RGKLPPSLCNLTVISVLYLDNNKLEGAIPFPSSP-GQMPSLGFLRLQDNNLTGKIPPTFG 205
+LT ++VL L N+L PS+ ++ L L + N LT ++P
Sbjct: 86 ---------SLTQLTVLDLGTNQL---TVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIE 132
Query: 206 YLASLRRVSLANNKLEGAIPTSLGNLQDLTELYLNGN 242
L L ++L N+L+ + L LT YL GN
Sbjct: 133 RLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGN 169
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 32.3 bits (72), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 65/147 (44%), Gaps = 5/147 (3%)
Query: 106 FTNLTNLVRLDLHCNYLNGYIPEKIGELQLLEQLDFSNNLLRG-KLPPSLCNLTVISVLY 164
++L LV L+ + L + IG L+ L++L+ ++NL++ KLP NLT + L
Sbjct: 101 LSSLQKLVALETNLASLENF---PIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLD 157
Query: 165 LDNNKLEGAIPFP-SSPGQMPSLGFLRLQDNNLTGKIPPTFGYLASLRRVSLANNKLEGA 223
L +NK++ QMP L N I P L+ ++L N+L+
Sbjct: 158 LSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSV 217
Query: 224 IPTSLGNLQDLTELYLNGNQLSGQIPK 250
L L +++L+ N P+
Sbjct: 218 PDGIFDRLTSLQKIWLHTNPWDCSCPR 244
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 32.3 bits (72), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 42/144 (29%), Positives = 62/144 (43%), Gaps = 14/144 (9%)
Query: 91 LLMHTNQFT-GVIPDSFTNLTNLVRLDLHCNYLNGYIPEKIGELQLLEQLDFS-NNLLRG 148
L M N F +PD FT L NL LDL L P L L+ L+ S NN
Sbjct: 474 LKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSL 533
Query: 149 KLPPSLC--NLTVI--SVLYLDNNKLEGAIPFPSSPGQMPSLGFLRLQDNNL--TGKIPP 202
P C +L V+ S+ ++ +K + FPS SL FL L N+ T +
Sbjct: 534 DTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPS------SLAFLNLTQNDFACTCEHQS 587
Query: 203 TFGYLASLRRVSLANNKLEGAIPT 226
++ R++ + ++E A P+
Sbjct: 588 FLQWIKDQRQLLVEVERMECATPS 611
Score = 29.6 bits (65), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Query: 130 IGELQLLEQLDFSNNLLRG-KLPPSLCNLTVISVLYLDNNKLEG 172
IG L+ L++L+ ++NL++ KLP NLT + L L +NK++
Sbjct: 144 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 187
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 32.3 bits (72), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 55/123 (44%), Gaps = 2/123 (1%)
Query: 130 IGELQLLEQLDFSNNLLRG-KLPPSLCNLTVISVLYLDNNKLEGAIPFP-SSPGQMPSLG 187
IG L+ L++L+ ++NL++ KLP NLT + L L +NK++ QMP L
Sbjct: 121 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLN 180
Query: 188 FLRLQDNNLTGKIPPTFGYLASLRRVSLANNKLEGAIPTSLGNLQDLTELYLNGNQLSGQ 247
N I P L+ ++L N+L+ L L +++L+ N
Sbjct: 181 LSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 240
Query: 248 IPK 250
P+
Sbjct: 241 CPR 243
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 32.3 bits (72), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 55/123 (44%), Gaps = 2/123 (1%)
Query: 130 IGELQLLEQLDFSNNLLRG-KLPPSLCNLTVISVLYLDNNKLEGAIPFP-SSPGQMPSLG 187
IG L+ L++L+ ++NL++ KLP NLT + L L +NK++ QMP L
Sbjct: 122 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLN 181
Query: 188 FLRLQDNNLTGKIPPTFGYLASLRRVSLANNKLEGAIPTSLGNLQDLTELYLNGNQLSGQ 247
N I P L+ ++L N+L+ L L +++L+ N
Sbjct: 182 LSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 241
Query: 248 IPK 250
P+
Sbjct: 242 CPR 244
>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B61
Length = 177
Score = 32.3 bits (72), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 54/118 (45%), Gaps = 6/118 (5%)
Query: 110 TNLVRLDLHCNYLNGYIPEKIGELQLLEQLDFSNNLLRGKLPPSLCN-LTVISVLYLDNN 168
++ RL+L N L +L L +L S N ++ LP + + LT +++LYL N
Sbjct: 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQS-LPDGVFDKLTKLTILYLHEN 86
Query: 169 KLEGAIPFPSSP-GQMPSLGFLRLQDNNLTGKIPPTFGYLASLRRVSLANNKLEGAIP 225
KL+ P+ ++ L L L N L F L SL+++ L N + + P
Sbjct: 87 KLQS---LPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 32.3 bits (72), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 55/123 (44%), Gaps = 2/123 (1%)
Query: 130 IGELQLLEQLDFSNNLLRG-KLPPSLCNLTVISVLYLDNNKLEGAIPFP-SSPGQMPSLG 187
IG L+ L++L+ ++NL++ KLP NLT + L L +NK++ QMP L
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLN 179
Query: 188 FLRLQDNNLTGKIPPTFGYLASLRRVSLANNKLEGAIPTSLGNLQDLTELYLNGNQLSGQ 247
N I P L+ ++L N+L+ L L +++L+ N
Sbjct: 180 LSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 239
Query: 248 IPK 250
P+
Sbjct: 240 CPR 242
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 32.0 bits (71), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 55/123 (44%), Gaps = 2/123 (1%)
Query: 130 IGELQLLEQLDFSNNLLRG-KLPPSLCNLTVISVLYLDNNKLEGAIPFP-SSPGQMPSLG 187
IG L+ L++L+ ++NL++ KLP NLT + L L +NK++ QMP L
Sbjct: 121 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLN 180
Query: 188 FLRLQDNNLTGKIPPTFGYLASLRRVSLANNKLEGAIPTSLGNLQDLTELYLNGNQLSGQ 247
N I P L+ ++L N+L+ L L +++L+ N
Sbjct: 181 LSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 240
Query: 248 IPK 250
P+
Sbjct: 241 CPR 243
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 32.0 bits (71), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 58/132 (43%), Gaps = 13/132 (9%)
Query: 102 IPDSFTNLTNLVRLDLHCNYLNGYIPEKIGELQLLEQLDFS-NNLLRGKLPPSLC--NLT 158
+PD FT L NL LDL L P L L+ L+ S NN P C +L
Sbjct: 462 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQ 521
Query: 159 VI--SVLYLDNNKLEGAIPFPSSPGQMPSLGFLRLQDNNL--TGKIPPTFGYLASLRRVS 214
V+ S+ ++ +K + FPS SL FL L N+ T + ++ R++
Sbjct: 522 VLDYSLNHIMTSKKQELQHFPS------SLAFLNLTQNDFACTCEHQSFLQWIKDQRQLL 575
Query: 215 LANNKLEGAIPT 226
+ ++E A P+
Sbjct: 576 VEVERMECATPS 587
Score = 29.6 bits (65), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Query: 130 IGELQLLEQLDFSNNLLRG-KLPPSLCNLTVISVLYLDNNKLEG 172
IG L+ L++L+ ++NL++ KLP NLT + L L +NK++
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 163
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 50/104 (48%), Gaps = 6/104 (5%)
Query: 121 YLNG----YIPEKIGELQLLEQLDFSNNLLRGKLPPSLCNLTVISVLYLDNNKLEGAIPF 176
YL+G +P+++ + L +D SNN + S N+T + L L N+L IP
Sbjct: 37 YLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLR-CIP- 94
Query: 177 PSSPGQMPSLGFLRLQDNNLTGKIPPTFGYLASLRRVSLANNKL 220
P + + SL L L N+++ F L++L +++ N L
Sbjct: 95 PRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPL 138
Score = 29.6 bits (65), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 43/93 (46%), Gaps = 5/93 (5%)
Query: 86 KNINQLLMHTNQFTGVIPDSFTNLTNLVRLDLHCNYLNGYIPEKIGELQLLEQLDFSNNL 145
+++ +L + NQFT ++P +N +L +DL N ++ + + L L S N
Sbjct: 31 RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR 89
Query: 146 LRGKLPPSLCNLTVISVLYLDNNKL----EGAI 174
LR P + L + +L L N + EGA
Sbjct: 90 LRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAF 122
Score = 28.9 bits (63), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 38/86 (44%), Gaps = 3/86 (3%)
Query: 160 ISVLYLDNNKLEGAIPFPSSPGQMPSLGFLRLQDNNLTGKIPPTFGYLASLRRVSLANNK 219
++ LYLD N+ P L + L +N ++ +F + L + L+ N+
Sbjct: 33 VTELYLDGNQFTLV---PKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR 89
Query: 220 LEGAIPTSLGNLQDLTELYLNGNQLS 245
L P + L+ L L L+GN +S
Sbjct: 90 LRCIPPRTFDGLKSLRLLSLHGNDIS 115
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 50/108 (46%), Gaps = 6/108 (5%)
Query: 139 LDFSNNLLRGKLPPSLCN-LTVISVLYLDNNKLEGAIPFPSSP-GQMPSLGFLRLQDNNL 196
LD N L+ LP + + LT ++ LYL NKL+ P+ ++ SL +L L N L
Sbjct: 33 LDLETNSLKS-LPNGVFDELTSLTQLYLGGNKLQS---LPNGVFNKLTSLTYLNLSTNQL 88
Query: 197 TGKIPPTFGYLASLRRVSLANNKLEGAIPTSLGNLQDLTELYLNGNQL 244
F L L+ ++L N+L+ L L +L L NQL
Sbjct: 89 QSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQL 136
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 68/156 (43%), Gaps = 5/156 (3%)
Query: 91 LLMHTNQFTGVIPDSFTNLTNLVRLDLHCNYLNGYIPEKIGELQLLEQLDFSNNLLRGKL 150
+L H +F V P+ T L LDL N + ++ LE+L+ + N++
Sbjct: 16 VLCHRKRFVAV-PEGIPTETRL--LDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVE 72
Query: 151 PPSLCNLTVISVLYLDNNKLEGAIPFPSSPGQMPSLGFLRLQDNNLTGKIPPTFGYLASL 210
P + NL + L L +N+L+ IP G + +L L + +N + + F L +L
Sbjct: 73 PGAFNNLFNLRTLGLRSNRLK-LIPLGVFTG-LSNLTKLDISENKIVILLDYMFQDLYNL 130
Query: 211 RRVSLANNKLEGAIPTSLGNLQDLTELYLNGNQLSG 246
+ + + +N L + L L +L L L+
Sbjct: 131 KSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTS 166
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 77/164 (46%), Gaps = 11/164 (6%)
Query: 87 NINQLLMHTNQFTGVIPDSFTNLTNLVRLDLHCNYLNGYIPEKIGELQLLEQLDFSNNLL 146
++++ L++T ++P + NL R +L ++G +P +L LD S+N L
Sbjct: 37 HLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDGTLP-------VLGTLDLSHNQL 89
Query: 147 RGKLPPSLCNLTVISVLYLDNNKLEGAIPFPSSPGQMPSLGFLRLQDNNLTGKIPPTFGY 206
+ LP L ++VL + N+L ++P + G + L L L+ N L P
Sbjct: 90 QS-LPLLGQTLPALTVLDVSFNRLT-SLPLGALRG-LGELQELYLKGNELKTLPPGLLTP 146
Query: 207 LASLRRVSLANNKLEGAIPTSLGNLQDLTELYLNGNQLSGQIPK 250
L ++SLANN+L L L++L L L N L IPK
Sbjct: 147 TPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLY-TIPK 189
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 77/164 (46%), Gaps = 11/164 (6%)
Query: 87 NINQLLMHTNQFTGVIPDSFTNLTNLVRLDLHCNYLNGYIPEKIGELQLLEQLDFSNNLL 146
++++ L++T ++P + NL R +L ++G +P +L LD S+N L
Sbjct: 37 HLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDGTLP-------VLGTLDLSHNQL 89
Query: 147 RGKLPPSLCNLTVISVLYLDNNKLEGAIPFPSSPGQMPSLGFLRLQDNNLTGKIPPTFGY 206
+ LP L ++VL + N+L ++P + G + L L L+ N L P
Sbjct: 90 QS-LPLLGQTLPALTVLDVSFNRLT-SLPLGALRG-LGELQELYLKGNELKTLPPGLLTP 146
Query: 207 LASLRRVSLANNKLEGAIPTSLGNLQDLTELYLNGNQLSGQIPK 250
L ++SLANN+L L L++L L L N L IPK
Sbjct: 147 TPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLY-TIPK 189
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 40/92 (43%), Gaps = 3/92 (3%)
Query: 150 LPPSLCNLTVISVLYLDNNKLEGAIPFPSSPGQMPSLGFLRLQDNNLTGKIPPTFGYLAS 209
LP S+ NL + L + N+ L P + +P L L L+ PP FG A
Sbjct: 198 LPASIANLQNLKSLKIRNSPLSALGP---AIHHLPKLEELDLRGCTALRNYPPIFGGRAP 254
Query: 210 LRRVSLANNKLEGAIPTSLGNLQDLTELYLNG 241
L+R+ L + +P + L L +L L G
Sbjct: 255 LKRLILKDCSNLLTLPLDIHRLTQLEKLDLRG 286
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 77/164 (46%), Gaps = 11/164 (6%)
Query: 87 NINQLLMHTNQFTGVIPDSFTNLTNLVRLDLHCNYLNGYIPEKIGELQLLEQLDFSNNLL 146
++++ L++T ++P + NL R +L ++G +P +L LD S+N L
Sbjct: 37 HLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDGTLP-------VLGTLDLSHNQL 89
Query: 147 RGKLPPSLCNLTVISVLYLDNNKLEGAIPFPSSPGQMPSLGFLRLQDNNLTGKIPPTFGY 206
+ LP L ++VL + N+L ++P + G + L L L+ N L P
Sbjct: 90 QS-LPLLGQTLPALTVLDVSFNRLT-SLPLGALRG-LGELQELYLKGNELKTLPPGLLTP 146
Query: 207 LASLRRVSLANNKLEGAIPTSLGNLQDLTELYLNGNQLSGQIPK 250
L ++SLANN+L L L++L L L N L IPK
Sbjct: 147 TPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLY-TIPK 189
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 77/164 (46%), Gaps = 11/164 (6%)
Query: 87 NINQLLMHTNQFTGVIPDSFTNLTNLVRLDLHCNYLNGYIPEKIGELQLLEQLDFSNNLL 146
++++ L++T ++P + NL R +L ++G +P +L LD S+N L
Sbjct: 37 HLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDGTLP-------VLGTLDLSHNQL 89
Query: 147 RGKLPPSLCNLTVISVLYLDNNKLEGAIPFPSSPGQMPSLGFLRLQDNNLTGKIPPTFGY 206
+ LP L ++VL + N+L ++P + G + L L L+ N L P
Sbjct: 90 QS-LPLLGQTLPALTVLDVSFNRLT-SLPLGALRG-LGELQELYLKGNELKTLPPGLLTP 146
Query: 207 LASLRRVSLANNKLEGAIPTSLGNLQDLTELYLNGNQLSGQIPK 250
L ++SLANN+L L L++L L L N L IPK
Sbjct: 147 TPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLY-TIPK 189
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 29.6 bits (65), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 29/61 (47%)
Query: 184 PSLGFLRLQDNNLTGKIPPTFGYLASLRRVSLANNKLEGAIPTSLGNLQDLTELYLNGNQ 243
P L LQ+N+++ F L L + L NNK+ + L+ L +LY++ N
Sbjct: 54 PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNH 113
Query: 244 L 244
L
Sbjct: 114 L 114
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 29.6 bits (65), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
Query: 102 IPDSFTNLTNLVRLDLHCNYLNGYIPEKIGELQLLEQ 138
+P F+NLTNLV +DL NY+ + +LQ L +
Sbjct: 145 LPAYFSNLTNLVHVDLSYNYIQTI---TVNDLQFLRE 178
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 29.6 bits (65), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
Query: 102 IPDSFTNLTNLVRLDLHCNYLNGYIPEKIGELQLLEQ 138
+P F+NLTNLV +DL NY+ + +LQ L +
Sbjct: 140 LPAYFSNLTNLVHVDLSYNYIQTI---TVNDLQFLRE 173
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 29.3 bits (64), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 58/126 (46%), Gaps = 8/126 (6%)
Query: 130 IGELQLLEQLDFSNNLLRGKLPPSLCNLTVISVLYLDNNKLEGAIPF---PSSPGQMPSL 186
+ +L+ L++LD S++ + CNL + ++ +L L P + + P L
Sbjct: 345 LEKLENLQKLDLSHSDIEAS---DCCNLQLKNLRHLQYLNLSYNEPLGLEDQAFKECPQL 401
Query: 187 GFLRLQDNNLTGKIPPT-FGYLASLRRVSLANNKLEGAIPTSLGNLQDLTELYLNGNQL- 244
L + +L K P + F L LR ++L++ L+ + L LQDL L L GN
Sbjct: 402 ELLDVAFTHLHVKAPHSPFQNLHLLRVLNLSHCLLDTSNQHLLAGLQDLRHLNLQGNSFQ 461
Query: 245 SGQIPK 250
G I K
Sbjct: 462 DGSISK 467
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 29.3 bits (64), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 50/166 (30%), Positives = 79/166 (47%), Gaps = 15/166 (9%)
Query: 87 NINQLLMHTNQFTGVIPDSFTNLT--NLVRLDLHCNYLNGYIPEKIGELQLLEQLDFSNN 144
++++ L++T ++P +T LT NL R +L ++G +P +L LD S+N
Sbjct: 37 HLSENLLYTFSLATLMP--YTRLTQLNLDRCELTKLQVDGTLP-------VLGTLDLSHN 87
Query: 145 LLRGKLPPSLCNLTVISVLYLDNNKLEGAIPFPSSPGQMPSLGFLRLQDNNLTGKIPPTF 204
L+ LP L ++VL + N+L ++P + G + L L L+ N L P
Sbjct: 88 QLQS-LPLLGQTLPALTVLDVSFNRLT-SLPLGALRG-LGELQELYLKGNELKTLPPGLL 144
Query: 205 GYLASLRRVSLANNKLEGAIPTSLGNLQDLTELYLNGNQLSGQIPK 250
L ++SLANN L L L++L L L N L IPK
Sbjct: 145 TPTPKLEKLSLANNDLTELPAGLLNGLENLDTLLLQENSLY-TIPK 189
>pdb|1H6U|A Chain A, Internalin H: Crystal Structure Of Fused N-Terminal
Domains
Length = 308
Score = 29.3 bits (64), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 61/135 (45%), Gaps = 12/135 (8%)
Query: 86 KNINQLLMHTNQFTGVIPDSFTNLTNLVRLDLHCNYLNGYIPEKIGELQLLEQLDFSNNL 145
++I L + + Q T V P L+NL L L N + P + L L+ L N
Sbjct: 107 QSIKTLDLTSTQITDVTP--LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQ 162
Query: 146 LRGKLPPSLCNLTVISVLYLDNNKLEGAIPFPSSPGQMPSLGFLRLQDNNLTGKIPPTFG 205
+ P L NL+ ++ L D+NK+ P S +P+L + L++N ++ P
Sbjct: 163 VSDLTP--LANLSKLTTLKADDNKISDISPLAS----LPNLIEVHLKNNQISDVSP--LA 214
Query: 206 YLASLRRVSLANNKL 220
++L V+L N +
Sbjct: 215 NTSNLFIVTLTNQTI 229
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 29.3 bits (64), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 76/164 (46%), Gaps = 11/164 (6%)
Query: 87 NINQLLMHTNQFTGVIPDSFTNLTNLVRLDLHCNYLNGYIPEKIGELQLLEQLDFSNNLL 146
++++ L++T ++P + NL R +L ++G +P +L LD S+N L
Sbjct: 38 HLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDGTLP-------VLGTLDLSHNQL 90
Query: 147 RGKLPPSLCNLTVISVLYLDNNKLEGAIPFPSSPGQMPSLGFLRLQDNNLTGKIPPTFGY 206
+ LP L ++VL + N+L ++P + G + L L L+ N L P
Sbjct: 91 QS-LPLLGQTLPALTVLDVSFNRLT-SLPLGALRG-LGELQELYLKGNELKTLPPGLLTP 147
Query: 207 LASLRRVSLANNKLEGAIPTSLGNLQDLTELYLNGNQLSGQIPK 250
L ++SLANN L L L++L L L N L IPK
Sbjct: 148 TPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPK 190
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 28.9 bits (63), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 76/164 (46%), Gaps = 11/164 (6%)
Query: 87 NINQLLMHTNQFTGVIPDSFTNLTNLVRLDLHCNYLNGYIPEKIGELQLLEQLDFSNNLL 146
++++ L++T ++P + NL R +L ++G +P +L LD S+N L
Sbjct: 37 HLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDGTLP-------VLGTLDLSHNQL 89
Query: 147 RGKLPPSLCNLTVISVLYLDNNKLEGAIPFPSSPGQMPSLGFLRLQDNNLTGKIPPTFGY 206
+ LP L ++VL + N+L ++P + G + L L L+ N L P
Sbjct: 90 QS-LPLLGQTLPALTVLDVSFNRLT-SLPLGALRG-LGELQELYLKGNELKTLPPGLLTP 146
Query: 207 LASLRRVSLANNKLEGAIPTSLGNLQDLTELYLNGNQLSGQIPK 250
L ++SLANN L L L++L L L N L IPK
Sbjct: 147 TPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPK 189
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 28.9 bits (63), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 38/158 (24%), Positives = 67/158 (42%), Gaps = 26/158 (16%)
Query: 87 NINQLLMHTNQFTGVIPDSFTNLTNLVRLDLHCNYLNGYIPEKIGELQLLEQLDFSNNLL 146
N+ L++ +N + DSF++L +L LDL NYL+ L L L+ N
Sbjct: 77 NLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPY 136
Query: 147 RGKLPPSL-CNLTVISVLYLDNNKLEGAIPFPSSPGQMPSLGFLRLQDNNLTGKIPPTFG 205
+ SL +LT + +L + G M + F ++Q + G
Sbjct: 137 KTLGETSLFSHLTKLQILRV---------------GNMDT--FTKIQRKDFAG------- 172
Query: 206 YLASLRRVSLANNKLEGAIPTSLGNLQDLTELYLNGNQ 243
L L + + + L+ P SL ++Q+++ L L+ Q
Sbjct: 173 -LTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQ 209
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 28.9 bits (63), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 76/164 (46%), Gaps = 11/164 (6%)
Query: 87 NINQLLMHTNQFTGVIPDSFTNLTNLVRLDLHCNYLNGYIPEKIGELQLLEQLDFSNNLL 146
++++ L++T ++P + NL R +L ++G +P +L LD S+N L
Sbjct: 37 HLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLP-------VLGTLDLSHNQL 89
Query: 147 RGKLPPSLCNLTVISVLYLDNNKLEGAIPFPSSPGQMPSLGFLRLQDNNLTGKIPPTFGY 206
+ LP L ++VL + N+L ++P + G + L L L+ N L P
Sbjct: 90 QS-LPLLGQTLPALTVLDVSFNRLT-SLPLGALRG-LGELQELYLKGNELKTLPPGLLTP 146
Query: 207 LASLRRVSLANNKLEGAIPTSLGNLQDLTELYLNGNQLSGQIPK 250
L ++SLANN L L L++L L L N L IPK
Sbjct: 147 TPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPK 189
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 28.9 bits (63), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 76/164 (46%), Gaps = 11/164 (6%)
Query: 87 NINQLLMHTNQFTGVIPDSFTNLTNLVRLDLHCNYLNGYIPEKIGELQLLEQLDFSNNLL 146
++++ L++T ++P + NL R +L ++G +P +L LD S+N L
Sbjct: 37 HLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLP-------VLGTLDLSHNQL 89
Query: 147 RGKLPPSLCNLTVISVLYLDNNKLEGAIPFPSSPGQMPSLGFLRLQDNNLTGKIPPTFGY 206
+ LP L ++VL + N+L ++P + G + L L L+ N L P
Sbjct: 90 QS-LPLLGQTLPALTVLDVSFNRLT-SLPLGALRG-LGELQELYLKGNELKTLPPGLLTP 146
Query: 207 LASLRRVSLANNKLEGAIPTSLGNLQDLTELYLNGNQLSGQIPK 250
L ++SLANN L L L++L L L N L IPK
Sbjct: 147 TPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPK 189
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 28.9 bits (63), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 45/108 (41%), Gaps = 26/108 (24%)
Query: 100 GVIPD-SFTNLTNLVRLDLHCNYLNG-YIPEKIGELQLLEQLDFSNNLLRGKLPPSLCNL 157
V+ D F NL L RLDL N + Y+ G+L L+ +DFS+N
Sbjct: 112 AVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSN------------- 158
Query: 158 TVISVLYLDNNKLEGAIPFPSSPGQMPSLGFLRLQDNNLTGKIPPTFG 205
+ + ++LE P Q +L F L N+L ++ +G
Sbjct: 159 ---QIFLVCEHELE--------PLQGKTLSFFSLAANSLYSRVSVDWG 195
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 28.9 bits (63), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 76/164 (46%), Gaps = 11/164 (6%)
Query: 87 NINQLLMHTNQFTGVIPDSFTNLTNLVRLDLHCNYLNGYIPEKIGELQLLEQLDFSNNLL 146
++++ L++T ++P + NL R +L ++G +P +L LD S+N L
Sbjct: 37 HLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLP-------VLGTLDLSHNQL 89
Query: 147 RGKLPPSLCNLTVISVLYLDNNKLEGAIPFPSSPGQMPSLGFLRLQDNNLTGKIPPTFGY 206
+ LP L ++VL + N+L ++P + G + L L L+ N L P
Sbjct: 90 QS-LPLLGQTLPALTVLDVSFNRLT-SLPLGALRG-LGELQELYLKGNELKTLPPGLLTP 146
Query: 207 LASLRRVSLANNKLEGAIPTSLGNLQDLTELYLNGNQLSGQIPK 250
L ++SLANN L L L++L L L N L IPK
Sbjct: 147 TPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPK 189
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 28.5 bits (62), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 48/115 (41%), Gaps = 7/115 (6%)
Query: 110 TNLVRLDLHCNYLNGYIPEKIGELQLLEQLDFSNNLLRGKLPPSLCNLTVISVLYLDNNK 169
TNL LDL N LN + L LE N ++ SL L + L L +
Sbjct: 248 TNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSF 307
Query: 170 LEGAIPFPSSPG-------QMPSLGFLRLQDNNLTGKIPPTFGYLASLRRVSLAN 217
+ +I S P + L L ++DN++ G F L +L+ +SL+N
Sbjct: 308 TKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSN 362
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 28.5 bits (62), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 48/115 (41%), Gaps = 7/115 (6%)
Query: 110 TNLVRLDLHCNYLNGYIPEKIGELQLLEQLDFSNNLLRGKLPPSLCNLTVISVLYLDNNK 169
TNL LDL N LN + L LE N ++ SL L + L L +
Sbjct: 258 TNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSF 317
Query: 170 LEGAIPFPSSPG-------QMPSLGFLRLQDNNLTGKIPPTFGYLASLRRVSLAN 217
+ +I S P + L L ++DN++ G F L +L+ +SL+N
Sbjct: 318 TKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSN 372
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 28.5 bits (62), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 183 MPSLGFLRLQDNNLTGKIPPTFGYLASLRRVSLANNKLEGAIPTSLGN 230
+ SL L L DN LT F YL+ LR + L NN +E +IP+ N
Sbjct: 122 LASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIE-SIPSYAFN 168
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.137 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,070,314
Number of Sequences: 62578
Number of extensions: 418649
Number of successful extensions: 1219
Number of sequences better than 100.0: 86
Number of HSP's better than 100.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 42
Number of HSP's that attempted gapping in prelim test: 685
Number of HSP's gapped (non-prelim): 354
length of query: 550
length of database: 14,973,337
effective HSP length: 104
effective length of query: 446
effective length of database: 8,465,225
effective search space: 3775490350
effective search space used: 3775490350
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.4 bits)