Query 008876
Match_columns 550
No_of_seqs 230 out of 2923
Neff 11.0
Searched_HMMs 46136
Date Thu Mar 28 17:41:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008876.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008876hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 1E-54 2.2E-59 475.3 35.1 530 1-544 81-611 (968)
2 PLN00113 leucine-rich repeat r 100.0 8.2E-52 1.8E-56 452.4 34.8 519 12-544 68-588 (968)
3 KOG4194 Membrane glycoprotein 100.0 9.7E-38 2.1E-42 290.7 6.1 376 112-546 80-458 (873)
4 KOG4194 Membrane glycoprotein 100.0 1.9E-36 4.2E-41 282.1 7.9 397 40-493 54-452 (873)
5 KOG0472 Leucine-rich repeat pr 100.0 3.6E-36 7.7E-41 268.2 -16.4 459 33-517 63-541 (565)
6 KOG0618 Serine/threonine phosp 100.0 5.7E-33 1.2E-37 272.6 -5.9 477 28-540 11-489 (1081)
7 KOG0618 Serine/threonine phosp 100.0 9.8E-33 2.1E-37 270.9 -6.3 448 36-514 43-510 (1081)
8 KOG0472 Leucine-rich repeat pr 100.0 2.8E-32 6E-37 243.4 -11.0 463 5-493 60-541 (565)
9 KOG0444 Cytoskeletal regulator 99.9 6.4E-30 1.4E-34 240.8 -2.9 368 86-493 7-375 (1255)
10 KOG0444 Cytoskeletal regulator 99.9 1.8E-29 3.9E-34 237.8 -6.0 350 5-367 24-375 (1255)
11 PLN03210 Resistant to P. syrin 99.9 3.6E-21 7.7E-26 211.3 25.0 339 32-389 552-904 (1153)
12 PLN03210 Resistant to P. syrin 99.9 2.2E-20 4.8E-25 205.1 27.1 106 407-518 802-907 (1153)
13 KOG4237 Extracellular matrix p 99.8 5.3E-22 1.2E-26 177.7 -2.4 286 40-343 69-359 (498)
14 KOG4237 Extracellular matrix p 99.8 1.3E-21 2.7E-26 175.3 -2.3 278 15-294 69-360 (498)
15 PRK15387 E3 ubiquitin-protein 99.7 9.2E-17 2E-21 164.0 16.6 161 331-522 303-463 (788)
16 PRK15387 E3 ubiquitin-protein 99.7 1.8E-16 3.9E-21 161.9 16.7 264 185-500 202-465 (788)
17 cd00116 LRR_RI Leucine-rich re 99.7 1.9E-18 4.1E-23 165.5 -1.5 60 332-391 139-206 (319)
18 cd00116 LRR_RI Leucine-rich re 99.7 7.3E-18 1.6E-22 161.5 -1.8 119 29-147 14-150 (319)
19 PRK15370 E3 ubiquitin-protein 99.6 7.3E-15 1.6E-19 151.2 11.9 247 232-517 178-428 (754)
20 PRK15370 E3 ubiquitin-protein 99.6 1.6E-14 3.5E-19 148.7 11.8 248 208-494 178-429 (754)
21 KOG0617 Ras suppressor protein 99.5 9.3E-16 2E-20 122.0 -5.3 157 34-197 29-186 (264)
22 KOG0617 Ras suppressor protein 99.4 5.8E-15 1.3E-19 117.5 -2.3 154 11-170 31-185 (264)
23 KOG1909 Ran GTPase-activating 99.2 3.9E-13 8.4E-18 119.7 -3.6 118 277-394 89-229 (382)
24 KOG3207 Beta-tubulin folding c 99.2 4.1E-12 8.8E-17 116.5 -0.1 217 298-519 114-341 (505)
25 KOG3207 Beta-tubulin folding c 99.2 6.2E-12 1.4E-16 115.4 1.0 211 230-469 119-339 (505)
26 KOG1909 Ran GTPase-activating 99.1 5E-12 1.1E-16 112.8 -0.4 236 182-419 28-310 (382)
27 PLN03150 hypothetical protein; 99.1 5.5E-11 1.2E-15 122.4 7.0 117 433-549 419-538 (623)
28 KOG0532 Leucine-rich repeat (L 99.1 8.1E-12 1.7E-16 118.4 -2.8 190 332-537 77-270 (722)
29 KOG4658 Apoptotic ATPase [Sign 99.0 1.1E-10 2.3E-15 122.7 4.2 200 13-221 523-730 (889)
30 PF14580 LRR_9: Leucine-rich r 99.0 2.8E-10 6.2E-15 95.3 4.8 100 408-512 43-148 (175)
31 KOG1259 Nischarin, modulator o 99.0 1.2E-10 2.7E-15 101.7 2.1 130 353-518 283-413 (490)
32 KOG4658 Apoptotic ATPase [Sign 99.0 2.1E-10 4.7E-15 120.5 4.0 128 38-168 523-652 (889)
33 PF13855 LRR_8: Leucine rich r 99.0 8.7E-10 1.9E-14 75.8 4.4 61 456-516 1-61 (61)
34 PF14580 LRR_9: Leucine-rich r 98.9 9.2E-10 2E-14 92.3 4.3 59 332-393 21-79 (175)
35 KOG1259 Nischarin, modulator o 98.9 6.5E-10 1.4E-14 97.3 2.1 199 252-469 210-412 (490)
36 PF13855 LRR_8: Leucine rich r 98.9 2.6E-09 5.6E-14 73.4 4.3 61 432-492 1-61 (61)
37 KOG4341 F-box protein containi 98.8 2.5E-10 5.4E-15 104.5 -4.8 277 15-316 140-437 (483)
38 COG4886 Leucine-rich repeat (L 98.7 1.1E-08 2.5E-13 100.8 6.1 184 33-226 111-295 (394)
39 COG4886 Leucine-rich repeat (L 98.7 2.3E-08 5E-13 98.6 7.3 195 66-271 97-292 (394)
40 PLN03150 hypothetical protein; 98.7 2.4E-08 5.3E-13 103.0 7.6 114 408-522 419-533 (623)
41 KOG0532 Leucine-rich repeat (L 98.7 9.4E-10 2E-14 104.7 -3.5 182 4-194 89-270 (722)
42 KOG4341 F-box protein containi 98.7 2.2E-10 4.8E-15 104.8 -8.2 286 209-521 139-443 (483)
43 KOG2120 SCF ubiquitin ligase, 98.6 6.2E-10 1.3E-14 97.3 -6.1 180 233-417 186-373 (419)
44 KOG2120 SCF ubiquitin ligase, 98.6 5.4E-10 1.2E-14 97.7 -7.5 62 254-315 311-373 (419)
45 KOG1859 Leucine-rich repeat pr 98.6 6.7E-10 1.4E-14 108.6 -8.6 90 451-543 204-295 (1096)
46 KOG2982 Uncharacterized conser 98.5 3E-08 6.4E-13 87.0 1.3 228 209-440 46-287 (418)
47 KOG0531 Protein phosphatase 1, 98.5 1.4E-08 3E-13 100.2 -1.5 219 230-468 70-289 (414)
48 KOG2982 Uncharacterized conser 98.4 1.8E-08 3.9E-13 88.3 -1.8 86 159-244 72-158 (418)
49 KOG0531 Protein phosphatase 1, 98.4 2.4E-08 5.3E-13 98.5 -2.2 244 60-318 70-318 (414)
50 COG5238 RNA1 Ran GTPase-activa 98.3 7E-08 1.5E-12 83.6 -2.4 210 34-244 26-284 (388)
51 KOG3665 ZYG-1-like serine/thre 98.1 1.6E-06 3.6E-11 89.3 4.1 105 14-120 123-230 (699)
52 KOG1859 Leucine-rich repeat pr 98.1 3.7E-08 7.9E-13 96.8 -7.8 180 31-221 102-292 (1096)
53 COG5238 RNA1 Ran GTPase-activa 98.0 5.4E-07 1.2E-11 78.2 -1.9 122 348-470 114-256 (388)
54 KOG3665 ZYG-1-like serine/thre 97.9 2.7E-06 5.8E-11 87.8 1.1 138 3-142 137-283 (699)
55 PRK15386 type III secretion pr 97.9 0.0001 2.2E-09 70.1 10.0 134 331-490 53-187 (426)
56 PF13306 LRR_5: Leucine rich r 97.8 3.1E-05 6.8E-10 62.7 5.7 123 7-136 6-128 (129)
57 KOG1644 U2-associated snRNP A' 97.8 3.8E-05 8.3E-10 64.1 5.6 58 332-391 44-101 (233)
58 PF13306 LRR_5: Leucine rich r 97.8 9.7E-05 2.1E-09 59.8 7.8 124 348-507 6-129 (129)
59 PRK15386 type III secretion pr 97.8 0.0002 4.3E-09 68.2 10.3 161 301-490 48-210 (426)
60 KOG4579 Leucine-rich repeat (L 97.7 2.2E-06 4.8E-11 66.5 -2.6 91 430-525 75-167 (177)
61 PF12799 LRR_4: Leucine Rich r 97.7 2.1E-05 4.6E-10 49.1 2.2 36 457-493 2-37 (44)
62 KOG1644 U2-associated snRNP A' 97.7 4.6E-05 9.9E-10 63.7 4.6 83 63-147 43-126 (233)
63 PF12799 LRR_4: Leucine Rich r 97.7 5.3E-05 1.1E-09 47.3 3.6 37 38-75 1-37 (44)
64 KOG1947 Leucine rich repeat pr 97.4 8.2E-06 1.8E-10 83.1 -4.0 113 84-196 186-307 (482)
65 KOG4579 Leucine-rich repeat (L 97.3 1.7E-05 3.8E-10 61.7 -2.6 112 430-544 51-163 (177)
66 KOG2739 Leucine-rich acidic nu 97.3 7E-05 1.5E-09 65.4 0.6 126 16-143 21-152 (260)
67 KOG1947 Leucine rich repeat pr 97.3 2.7E-05 5.8E-10 79.4 -2.4 241 254-519 186-442 (482)
68 KOG2123 Uncharacterized conser 97.1 1.6E-05 3.4E-10 69.6 -5.1 98 408-510 20-123 (388)
69 KOG2123 Uncharacterized conser 96.8 0.00011 2.5E-09 64.4 -2.8 100 12-116 18-123 (388)
70 KOG2739 Leucine-rich acidic nu 96.3 0.0031 6.8E-08 55.4 2.9 90 427-518 38-130 (260)
71 KOG4308 LRR-containing protein 95.5 4.5E-05 9.7E-10 75.4 -13.4 87 307-394 89-188 (478)
72 KOG3864 Uncharacterized conser 95.0 0.0019 4E-08 54.4 -3.1 35 456-490 151-186 (221)
73 PF00560 LRR_1: Leucine Rich R 94.8 0.014 3.1E-07 30.0 1.1 12 458-469 2-13 (22)
74 KOG3864 Uncharacterized conser 94.4 0.0078 1.7E-07 50.7 -1.0 81 39-119 102-185 (221)
75 KOG4308 LRR-containing protein 94.3 0.00016 3.6E-09 71.5 -12.9 186 332-518 89-304 (478)
76 PF00560 LRR_1: Leucine Rich R 93.7 0.032 6.9E-07 28.7 0.8 17 506-523 2-18 (22)
77 PF13504 LRR_7: Leucine rich r 91.6 0.099 2.2E-06 24.8 0.9 12 505-516 2-13 (17)
78 smart00369 LRR_TYP Leucine-ric 88.7 0.27 5.8E-06 26.4 1.3 17 456-472 2-18 (26)
79 smart00370 LRR Leucine-rich re 88.7 0.27 5.8E-06 26.4 1.3 17 456-472 2-18 (26)
80 KOG0473 Leucine-rich repeat pr 84.6 0.046 9.9E-07 47.3 -4.8 88 427-517 37-124 (326)
81 PF13516 LRR_6: Leucine Rich r 83.8 0.23 4.9E-06 26.1 -0.6 12 39-50 3-14 (24)
82 KOG0473 Leucine-rich repeat pr 82.5 0.076 1.6E-06 46.0 -4.3 82 36-120 40-121 (326)
83 smart00367 LRR_CC Leucine-rich 80.9 1.2 2.6E-05 23.8 1.5 18 12-29 1-18 (26)
84 smart00365 LRR_SD22 Leucine-ri 80.3 1.5 3.4E-05 23.5 1.7 15 456-470 2-16 (26)
85 KOG3763 mRNA export factor TAP 68.9 2.5 5.5E-05 41.9 1.4 64 429-494 215-284 (585)
86 smart00368 LRR_RI Leucine rich 68.7 3.3 7.2E-05 22.7 1.3 15 456-470 2-16 (28)
87 KOG4242 Predicted myosin-I-bin 67.7 27 0.00059 34.3 7.8 61 434-494 415-482 (553)
88 smart00364 LRR_BAC Leucine-ric 61.5 5.7 0.00012 21.3 1.2 18 504-522 2-19 (26)
89 PF01030 Recep_L_domain: Recep 49.0 16 0.00035 28.2 2.6 16 530-545 89-104 (112)
90 KOG4242 Predicted myosin-I-bin 44.5 1.7E+02 0.0037 29.2 8.8 280 13-299 165-487 (553)
91 KOG3763 mRNA export factor TAP 41.4 13 0.00029 37.2 1.2 36 255-290 217-254 (585)
92 PF05725 FNIP: FNIP Repeat; I 35.9 52 0.0011 20.2 2.9 31 456-488 12-42 (44)
93 KOG1665 AFH1-interacting prote 25.3 1.5E+02 0.0033 26.0 4.7 15 431-445 195-209 (302)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=1e-54 Score=475.34 Aligned_cols=530 Identities=33% Similarity=0.516 Sum_probs=461.4
Q ss_pred CCCCCCccccccCcccEeeCCCCCCCCcCCCCCcc-CCCCCcEEeCCCccCCCCCchhhhhccCCcEEEcCCCcCCCccc
Q 008876 1 MKGSLSPSISLLTSLEVLDLGGLVDLTGIIPPSIG-CLQNLKKLYLYGNKLSGSVPESISKLLKLEELHLHENRLSGTLS 79 (550)
Q Consensus 1 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~-~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~ 79 (550)
++|.+|.+|..+++|++|++++| .+.+.+|..+. .+++|++|++++|.+++.+|. ..+++|++|++++|.+....|
T Consensus 81 i~~~~~~~~~~l~~L~~L~Ls~n-~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p 157 (968)
T PLN00113 81 ISGKISSAIFRLPYIQTINLSNN-QLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIP 157 (968)
T ss_pred ccccCChHHhCCCCCCEEECCCC-ccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCcccccCC
Confidence 35677888999999999999984 56666777654 899999999999988866664 457899999999998876778
Q ss_pred ccccCCcccchhhccccccCccCchhccCCCCCCEEEcccccCccccchhhcCCCCcCeEeccCccccCcCCcccCCCCC
Q 008876 80 SSLGNLKNINQLLMHTNQFTGVIPDSFTNLTNLVRLDLHCNYLNGYIPEKIGELQLLEQLDFSNNLLRGKLPPSLCNLTV 159 (550)
Q Consensus 80 ~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~ 159 (550)
..+..+++|++|++++|.+....|..+.++++|++|++++|.+....+..+..+++|+.|++++|.+.+..|..+..+++
T Consensus 158 ~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~ 237 (968)
T PLN00113 158 NDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTS 237 (968)
T ss_pred hHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCC
Confidence 88999999999999999988788888999999999999999888778888999999999999999888788888999999
Q ss_pred CCEEEccCCcccccccCCCCCCCCCCccEEEcCCCcccccCCCCccCCCCCcEEEcccCcccCcchhhccCCCCCcEEEe
Q 008876 160 ISVLYLDNNKLEGAIPFPSSPGQMPSLGFLRLQDNNLTGKIPPTFGYLASLRRVSLANNKLEGAIPTSLGNLQDLTELYL 239 (550)
Q Consensus 160 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l 239 (550)
|+.|++++|.+.+.. +..+..+++|+.|++++|.+....+..+..+++|++|++++|.+....+..+..+++|+.|++
T Consensus 238 L~~L~L~~n~l~~~~--p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l 315 (968)
T PLN00113 238 LNHLDLVYNNLTGPI--PSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHL 315 (968)
T ss_pred CCEEECcCceecccc--ChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEEC
Confidence 999999999876543 367888999999999999888777778888999999999999988788888889999999999
Q ss_pred cCccccCCCcccccCCCcccEEEccCCcccCCCCCcccCCCCccEEEccCCcccCCccchhcccCCCCcEEEeecccccc
Q 008876 240 NGNQLSGQIPKSISQLSQLIFLSISRNQIEGPLPSGMFSLQNLQTLDLSFNLLNLSSIPMWMAELPSLSRVYLAGCGIKG 319 (550)
Q Consensus 240 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 319 (550)
++|.+....+..+..+++|+.|++++|.+....+..+..+++|+.|++++|.+... ++..+..+++|+.+++.+|.+.+
T Consensus 316 ~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~-~p~~~~~~~~L~~L~l~~n~l~~ 394 (968)
T PLN00113 316 FSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGE-IPEGLCSSGNLFKLILFSNSLEG 394 (968)
T ss_pred CCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEee-CChhHhCcCCCCEEECcCCEecc
Confidence 99988877777888899999999999998877888888889999999998876543 56677778899999999998887
Q ss_pred cCCccccCCCCCccEEEcccccCCCCchhhhhccccccEEEccCCeeeccCCccccCCCCCcEEEccCCccccccccccc
Q 008876 320 KIPEFFRTTPSPLQELDLSVNHLSGSIPAWIGSLTQLYSLNLSRNSLVSSIPETITNLQDLVLLDLHSNKLTGSISQVFK 399 (550)
Q Consensus 320 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~ 399 (550)
..+..+..... |+.|++++|.+++..+..+..+++|+.+++++|.+....+..+..+++|+.|++++|++....+..+.
T Consensus 395 ~~p~~~~~~~~-L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~ 473 (968)
T PLN00113 395 EIPKSLGACRS-LRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFG 473 (968)
T ss_pred cCCHHHhCCCC-CCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccc
Confidence 77766665554 99999999999888888888999999999999999887777777899999999999988755444332
Q ss_pred cCCCCCCCCeEEEeccCCCCCCCCCCCCCCCcccccEEeccCCcccCcCCcccccccccceeeCCCCccceeCCCcCCCC
Q 008876 400 IGQRFPDGSLTYIDLSDNGFSSGIELTGGGGQTGIRFLNLSRNVLEGQIPVSVGRLRSLRSLDLSYNKLGYVLPGSLANE 479 (550)
Q Consensus 400 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l 479 (550)
.++|+.|++++|.+.+..+. .+..+++|+.|++++|.+.+..|..+..+++|+.|+|++|.+++..|..+.++
T Consensus 474 ------~~~L~~L~ls~n~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l 546 (968)
T PLN00113 474 ------SKRLENLDLSRNQFSGAVPR-KLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEM 546 (968)
T ss_pred ------cccceEEECcCCccCCccCh-hhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCc
Confidence 26899999999999876654 57789999999999999999999999999999999999999999999999999
Q ss_pred CCCcEEECcCccccccCCCcccCCCcCceeecCCccccccCCCCCCCCCccccCCCCCCCCCCCC
Q 008876 480 SSLETLKLQNNRFTGRIPSEYLKLKKLKELDLSHNLLVGEIPAGKPLSDFPESSFSGNRGLCGKP 544 (550)
Q Consensus 480 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 544 (550)
++|++|++++|.+.+.+|..+.++++|+.+++++|++.+.+|...++.++....+.|||.+|+-+
T Consensus 547 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~~~~~~~~n~~lc~~~ 611 (968)
T PLN00113 547 PVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAFLAINASAVAGNIDLCGGD 611 (968)
T ss_pred ccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCcchhcccChhhhcCCccccCCc
Confidence 99999999999999999999999999999999999999999999888889999999999999854
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=8.2e-52 Score=452.42 Aligned_cols=519 Identities=34% Similarity=0.506 Sum_probs=463.4
Q ss_pred cCcccEeeCCCCCCCCcCCCCCccCCCCCcEEeCCCccCCCCCchhhh-hccCCcEEEcCCCcCCCcccccccCCcccch
Q 008876 12 LTSLEVLDLGGLVDLTGIIPPSIGCLQNLKKLYLYGNKLSGSVPESIS-KLLKLEELHLHENRLSGTLSSSLGNLKNINQ 90 (550)
Q Consensus 12 ~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 90 (550)
..+++.|++++ ..+.+.++..+..+++|++|++++|.+.+.+|..+. .+.+|++|++++|.+....|. ..+++|++
T Consensus 68 ~~~v~~L~L~~-~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~ 144 (968)
T PLN00113 68 SSRVVSIDLSG-KNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLET 144 (968)
T ss_pred CCcEEEEEecC-CCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCE
Confidence 45799999998 566777888899999999999999999877887765 899999999999988755553 46899999
Q ss_pred hhccccccCccCchhccCCCCCCEEEcccccCccccchhhcCCCCcCeEeccCccccCcCCcccCCCCCCCEEEccCCcc
Q 008876 91 LLMHTNQFTGVIPDSFTNLTNLVRLDLHCNYLNGYIPEKIGELQLLEQLDFSNNLLRGKLPPSLCNLTVISVLYLDNNKL 170 (550)
Q Consensus 91 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 170 (550)
|++++|.+....|..+..+++|++|++++|.+....+..+..+++|++|++++|.+.+..|..+.++++|+.|++++|.+
T Consensus 145 L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l 224 (968)
T PLN00113 145 LDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNL 224 (968)
T ss_pred EECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCcc
Confidence 99999999888899999999999999999998878889999999999999999998888899999999999999999988
Q ss_pred cccccCCCCCCCCCCccEEEcCCCcccccCCCCccCCCCCcEEEcccCcccCcchhhccCCCCCcEEEecCccccCCCcc
Q 008876 171 EGAIPFPSSPGQMPSLGFLRLQDNNLTGKIPPTFGYLASLRRVSLANNKLEGAIPTSLGNLQDLTELYLNGNQLSGQIPK 250 (550)
Q Consensus 171 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~ 250 (550)
.+.. +..++.+++|++|++++|.+....+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+....+.
T Consensus 225 ~~~~--p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~ 302 (968)
T PLN00113 225 SGEI--PYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPE 302 (968)
T ss_pred CCcC--ChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCCh
Confidence 7543 36788999999999999999878888899999999999999999888888899999999999999998877888
Q ss_pred cccCCCcccEEEccCCcccCCCCCcccCCCCccEEEccCCcccCCccchhcccCCCCcEEEeecccccccCCccccCCCC
Q 008876 251 SISQLSQLIFLSISRNQIEGPLPSGMFSLQNLQTLDLSFNLLNLSSIPMWMAELPSLSRVYLAGCGIKGKIPEFFRTTPS 330 (550)
Q Consensus 251 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 330 (550)
.+..+++|+.|++++|.+....+..+..+++|+.|++++|.+... ++..+..+++|+.|++++|.+.+..+..+.....
T Consensus 303 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~-~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~ 381 (968)
T PLN00113 303 LVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGE-IPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGN 381 (968)
T ss_pred hHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCc-CChHHhCCCCCcEEECCCCeeEeeCChhHhCcCC
Confidence 888999999999999999888888888999999999999976543 6778888999999999999988777776665544
Q ss_pred CccEEEcccccCCCCchhhhhccccccEEEccCCeeeccCCccccCCCCCcEEEccCCccccccccccccCCCCCCCCeE
Q 008876 331 PLQELDLSVNHLSGSIPAWIGSLTQLYSLNLSRNSLVSSIPETITNLQDLVLLDLHSNKLTGSISQVFKIGQRFPDGSLT 410 (550)
Q Consensus 331 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~L~ 410 (550)
++.+++++|.+.+..+..+..+++|+.|++++|.+....+..+..++.|+.+++++|++....+..+... ++|+
T Consensus 382 -L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l-----~~L~ 455 (968)
T PLN00113 382 -LFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDM-----PSLQ 455 (968)
T ss_pred -CCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccC-----CCCc
Confidence 9999999999998888889999999999999999998888889999999999999999987655444332 7899
Q ss_pred EEeccCCCCCCCCCCCCCCCcccccEEeccCCcccCcCCcccccccccceeeCCCCccceeCCCcCCCCCCCcEEECcCc
Q 008876 411 YIDLSDNGFSSGIELTGGGGQTGIRFLNLSRNVLEGQIPVSVGRLRSLRSLDLSYNKLGYVLPGSLANESSLETLKLQNN 490 (550)
Q Consensus 411 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~ 490 (550)
.|++++|.+.+..+. ....++|+.|++++|.+++..+..+..+++|+.|++++|.+.+..|..+.++++|++|++++|
T Consensus 456 ~L~L~~n~~~~~~p~--~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N 533 (968)
T PLN00113 456 MLSLARNKFFGGLPD--SFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHN 533 (968)
T ss_pred EEECcCceeeeecCc--ccccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCC
Confidence 999999998876554 335689999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCcccCCCcCceeecCCccccccCCCCCC-CCCccccCCCCCCCCCCCC
Q 008876 491 RFTGRIPSEYLKLKKLKELDLSHNLLVGEIPAGKP-LSDFPESSFSGNRGLCGKP 544 (550)
Q Consensus 491 ~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ 544 (550)
.+++.+|..+..+++|+.|++++|.+.+.+|.... +++++.+++++|++.+..+
T Consensus 534 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p 588 (968)
T PLN00113 534 QLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLP 588 (968)
T ss_pred cccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCC
Confidence 99999999999999999999999999999998754 7889999999999887655
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=9.7e-38 Score=290.70 Aligned_cols=376 Identities=25% Similarity=0.292 Sum_probs=267.3
Q ss_pred CCEEEcccccCccccchhhcCCCCcCeEeccCccccCcCCcccCCCCCCCEEEccCCcccccccCCCCCCCCCCccEEEc
Q 008876 112 LVRLDLHCNYLNGYIPEKIGELQLLEQLDFSNNLLRGKLPPSLCNLTVISVLYLDNNKLEGAIPFPSSPGQMPSLGFLRL 191 (550)
Q Consensus 112 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l 191 (550)
-+.|++++|.+..+.+..|.++++|+++++..|.++ ..|....... +|++|++
T Consensus 80 t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sg--------------------------hl~~L~L 132 (873)
T KOG4194|consen 80 TQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESG--------------------------HLEKLDL 132 (873)
T ss_pred eeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hccccccccc--------------------------ceeEEee
Confidence 345777777777666666777777777777777665 4454433333 4555555
Q ss_pred CCCcccccCCCCccCCCCCcEEEcccCcccCcchhhccCCCCCcEEEecCccccCCCcccccCCCcccEEEccCCcccCC
Q 008876 192 QDNNLTGKIPPTFGYLASLRRVSLANNKLEGAIPTSLGNLQDLTELYLNGNQLSGQIPKSISQLSQLIFLSISRNQIEGP 271 (550)
Q Consensus 192 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 271 (550)
.+|.+.....+.++.++.|+.|+++.|.+.......|..-.++++|+|.+|+++......|..+.+|..|.+++|+++..
T Consensus 133 ~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittL 212 (873)
T KOG4194|consen 133 RHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTL 212 (873)
T ss_pred eccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCccccc
Confidence 55555544445555566666666666666555445555556677777777777766666666777777777777777744
Q ss_pred CCCcccCCCCccEEEccCCcccCCccchhcccCCCCcEEEeecccccccCCccccCCCCCccEEEcccccCCCCchhhhh
Q 008876 272 LPSGMFSLQNLQTLDLSFNLLNLSSIPMWMAELPSLSRVYLAGCGIKGKIPEFFRTTPSPLQELDLSVNHLSGSIPAWIG 351 (550)
Q Consensus 272 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 351 (550)
-...|.++++|+.|++..|.+.... ...|+.+++|+.|.+..|++.......|..+.+ +++|++..|+++..-..++.
T Consensus 213 p~r~Fk~L~~L~~LdLnrN~irive-~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~k-me~l~L~~N~l~~vn~g~lf 290 (873)
T KOG4194|consen 213 PQRSFKRLPKLESLDLNRNRIRIVE-GLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEK-MEHLNLETNRLQAVNEGWLF 290 (873)
T ss_pred CHHHhhhcchhhhhhccccceeeeh-hhhhcCchhhhhhhhhhcCcccccCcceeeecc-cceeecccchhhhhhccccc
Confidence 4444555777777777777654331 224566777777777777666555555555444 77777777777766666667
Q ss_pred ccccccEEEccCCeeeccCCccccCCCCCcEEEccCCccccccccccccCCCCCCCCeEEEeccCCCCCCCCCCCCCCCc
Q 008876 352 SLTQLYSLNLSRNSLVSSIPETITNLQDLVLLDLHSNKLTGSISQVFKIGQRFPDGSLTYIDLSDNGFSSGIELTGGGGQ 431 (550)
Q Consensus 352 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 431 (550)
++.+|+.|++++|.|..+.....+..++|++|+++.|+|+...++.| ..+
T Consensus 291 gLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf------------------------------~~L 340 (873)
T KOG4194|consen 291 GLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSF------------------------------RVL 340 (873)
T ss_pred ccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHH------------------------------HHH
Confidence 77777777777777777666677777777777777777765555444 456
Q ss_pred ccccEEeccCCcccCcCCcccccccccceeeCCCCccceeCC---CcCCCCCCCcEEECcCccccccCCCcccCCCcCce
Q 008876 432 TGIRFLNLSRNVLEGQIPVSVGRLRSLRSLDLSYNKLGYVLP---GSLANESSLETLKLQNNRFTGRIPSEYLKLKKLKE 508 (550)
Q Consensus 432 ~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~---~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 508 (550)
..|++|++++|.+......+|.++.+|++|||++|.++..+. ..|.++++|++|++.||.+..+--..|..++.||.
T Consensus 341 ~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~ 420 (873)
T KOG4194|consen 341 SQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEH 420 (873)
T ss_pred HHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccce
Confidence 678888888888887777889999999999999998875443 44778999999999999998655557999999999
Q ss_pred eecCCccccccCCCCCCCCCccccCCCCCCCCCCCCCC
Q 008876 509 LDLSHNLLVGEIPAGKPLSDFPESSFSGNRGLCGKPLT 546 (550)
Q Consensus 509 L~l~~n~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 546 (550)
|++.+|.+..--|..+..-.+++|-+..-.++|+|+++
T Consensus 421 LdL~~NaiaSIq~nAFe~m~Lk~Lv~nSssflCDCql~ 458 (873)
T KOG4194|consen 421 LDLGDNAIASIQPNAFEPMELKELVMNSSSFLCDCQLK 458 (873)
T ss_pred ecCCCCcceeecccccccchhhhhhhcccceEEeccHH
Confidence 99999999998898888778999999888899999985
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=1.9e-36 Score=282.11 Aligned_cols=397 Identities=26% Similarity=0.298 Sum_probs=283.2
Q ss_pred CcEEeCCCccCCCCCchhhhhc--cCCcEEEcCCCcCCCcccccccCCcccchhhccccccCccCchhccCCCCCCEEEc
Q 008876 40 LKKLYLYGNKLSGSVPESISKL--LKLEELHLHENRLSGTLSSSLGNLKNINQLLMHTNQFTGVIPDSFTNLTNLVRLDL 117 (550)
Q Consensus 40 L~~L~l~~~~~~~~~~~~~~~l--~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 117 (550)
-+.|+.++..+.......+... +.-++|++++|++.+..+..|.++++|+.+++..|.++ ..|.......+|++|++
T Consensus 54 ~~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L 132 (873)
T KOG4194|consen 54 TRLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDL 132 (873)
T ss_pred ceeeecCccccccccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEee
Confidence 3456666655543323333321 24555777777776666666667777777777666665 44544444445666776
Q ss_pred ccccCccccchhhcCCCCcCeEeccCccccCcCCcccCCCCCCCEEEccCCcccccccCCCCCCCCCCccEEEcCCCccc
Q 008876 118 HCNYLNGYIPEKIGELQLLEQLDFSNNLLRGKLPPSLCNLTVISVLYLDNNKLEGAIPFPSSPGQMPSLGFLRLQDNNLT 197 (550)
Q Consensus 118 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 197 (550)
.+|.|..+..+.+..++.|+.||++.|.+..... ..+..-+++++|++++|+++
T Consensus 133 ~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~--------------------------~sfp~~~ni~~L~La~N~It 186 (873)
T KOG4194|consen 133 RHNLISSVTSEELSALPALRSLDLSRNLISEIPK--------------------------PSFPAKVNIKKLNLASNRIT 186 (873)
T ss_pred eccccccccHHHHHhHhhhhhhhhhhchhhcccC--------------------------CCCCCCCCceEEeecccccc
Confidence 6666666656666666666666666665542111 22334457777777777777
Q ss_pred ccCCCCccCCCCCcEEEcccCcccCcchhhccCCCCCcEEEecCccccCCCcccccCCCcccEEEccCCcccCCCCCccc
Q 008876 198 GKIPPTFGYLASLRRVSLANNKLEGAIPTSLGNLQDLTELYLNGNQLSGQIPKSISQLSQLIFLSISRNQIEGPLPSGMF 277 (550)
Q Consensus 198 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~ 277 (550)
......|..+.+|..|.++.|+++...+..|..+|+|+.|+|..|++.....-.|.++++|+.|.+..|++.......|.
T Consensus 187 ~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy 266 (873)
T KOG4194|consen 187 TLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFY 266 (873)
T ss_pred ccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCccee
Confidence 77777788888888888888888877778888899999999999888754455678889999999999888865555666
Q ss_pred CCCCccEEEccCCcccCCccchhcccCCCCcEEEeecccccccCCccccCCCCCccEEEcccccCCCCchhhhhcccccc
Q 008876 278 SLQNLQTLDLSFNLLNLSSIPMWMAELPSLSRVYLAGCGIKGKIPEFFRTTPSPLQELDLSVNHLSGSIPAWIGSLTQLY 357 (550)
Q Consensus 278 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 357 (550)
.+.++++|+++.|.+... -..|+..+..|+.|+++.|.+...-...+...++ |+.|+++.|+++......|..++.|+
T Consensus 267 ~l~kme~l~L~~N~l~~v-n~g~lfgLt~L~~L~lS~NaI~rih~d~Wsftqk-L~~LdLs~N~i~~l~~~sf~~L~~Le 344 (873)
T KOG4194|consen 267 GLEKMEHLNLETNRLQAV-NEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQK-LKELDLSSNRITRLDEGSFRVLSQLE 344 (873)
T ss_pred eecccceeecccchhhhh-hcccccccchhhhhccchhhhheeecchhhhccc-ceeEeccccccccCChhHHHHHHHhh
Confidence 788899999988865433 3446667777777777777776665555555544 77777777777777777777777777
Q ss_pred EEEccCCeeeccCCccccCCCCCcEEEccCCccccccccccccCCCCCCCCeEEEeccCCCCCCCCCCCCCCCcccccEE
Q 008876 358 SLNLSRNSLVSSIPETITNLQDLVLLDLHSNKLTGSISQVFKIGQRFPDGSLTYIDLSDNGFSSGIELTGGGGQTGIRFL 437 (550)
Q Consensus 358 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L 437 (550)
+|+++.|.+.......|..+.+|++|++++|.+.-.... ....|.++++|+.|
T Consensus 345 ~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IED---------------------------aa~~f~gl~~LrkL 397 (873)
T KOG4194|consen 345 ELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIED---------------------------AAVAFNGLPSLRKL 397 (873)
T ss_pred hhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEec---------------------------chhhhccchhhhhe
Confidence 777777777766556677777777777777766422111 12256789999999
Q ss_pred eccCCcccCcCCcccccccccceeeCCCCccceeCCCcCCCCCCCcEEECcCcccc
Q 008876 438 NLSRNVLEGQIPVSVGRLRSLRSLDLSYNKLGYVLPGSLANESSLETLKLQNNRFT 493 (550)
Q Consensus 438 ~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~~~ 493 (550)
++.+|++..+...+|.++++|++|+|.+|.|..+.+++|..+ .|++|.+..-.+.
T Consensus 398 ~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSssfl 452 (873)
T KOG4194|consen 398 RLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNSSSFL 452 (873)
T ss_pred eecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcccceE
Confidence 999999998889999999999999999999999999999988 9999998866554
No 5
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.97 E-value=3.6e-36 Score=268.15 Aligned_cols=459 Identities=29% Similarity=0.385 Sum_probs=232.4
Q ss_pred CccCCCCCcEEeCCCccCCCCCchhhhhccCCcEEEcCCCcCCCcccccccCCcccchhhccccccCccCchhccCCCCC
Q 008876 33 SIGCLQNLKKLYLYGNKLSGSVPESISKLLKLEELHLHENRLSGTLSSSLGNLKNINQLLMHTNQFTGVIPDSFTNLTNL 112 (550)
Q Consensus 33 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L 112 (550)
.+.++..|.+++++.+++. ..|.+++.+..++.++.+.+++. ..|..+..+..|+.++++.+.+. ..++.++.+-.+
T Consensus 63 dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s~n~~~-el~~~i~~~~~l 139 (565)
T KOG0472|consen 63 DLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCSSNELK-ELPDSIGRLLDL 139 (565)
T ss_pred hhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhcccccee-ecCchHHHHhhh
Confidence 3444444444444444444 34444444444444444444444 44444444444555555444444 233334444444
Q ss_pred CEEEcccccCccccchhhcCCCCcCeEeccCccccCcCCcccCCCCCCCEEEccCCcccccccCCCCCCCCCCccEEEcC
Q 008876 113 VRLDLHCNYLNGYIPEKIGELQLLEQLDFSNNLLRGKLPPSLCNLTVISVLYLDNNKLEGAIPFPSSPGQMPSLGFLRLQ 192 (550)
Q Consensus 113 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~ 192 (550)
+.++..+|.++ ..|.++..+.+|..+++.+++++ ..|...-+++.|++++.-.|.+. .++..++.+.+|.-|++.
T Consensus 140 ~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~-~l~~~~i~m~~L~~ld~~~N~L~---tlP~~lg~l~~L~~LyL~ 214 (565)
T KOG0472|consen 140 EDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLK-ALPENHIAMKRLKHLDCNSNLLE---TLPPELGGLESLELLYLR 214 (565)
T ss_pred hhhhccccccc-cCchHHHHHHHHHHhhccccchh-hCCHHHHHHHHHHhcccchhhhh---cCChhhcchhhhHHHHhh
Confidence 44444444444 23444444444444444444444 22222222444444444444332 122334444444444444
Q ss_pred CCcccccCCCCccCCCCCcEEEcccCcccCcchhhccCCCCCcEEEecCccccCCCcccccCCCcccEEEccCCcccCCC
Q 008876 193 DNNLTGKIPPTFGYLASLRRVSLANNKLEGAIPTSLGNLQDLTELYLNGNQLSGQIPKSISQLSQLIFLSISRNQIEGPL 272 (550)
Q Consensus 193 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 272 (550)
+|.+. .+| .|..+..|+++.+..|.+.....+...+++++..||+++|++. ..++.+.-+++|..|++++|.++ ..
T Consensus 215 ~Nki~-~lP-ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is-~L 290 (565)
T KOG0472|consen 215 RNKIR-FLP-EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDIS-SL 290 (565)
T ss_pred hcccc-cCC-CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCccc-cC
Confidence 44444 222 3444444555554444444222223334445555555555544 23333334444555555555544 34
Q ss_pred CCcccCCCCccEEEccCCcccCCccchhcccC------CCCcEEEeeccccccc----------CCccccC--CCCCccE
Q 008876 273 PSGMFSLQNLQTLDLSFNLLNLSSIPMWMAEL------PSLSRVYLAGCGIKGK----------IPEFFRT--TPSPLQE 334 (550)
Q Consensus 273 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~------~~L~~L~l~~~~~~~~----------~~~~~~~--~~~~L~~ 334 (550)
+..++++ .|+.|.+.||++.. +...+-+. ..|+. .+..-+++.. ....+.. ..-+.+.
T Consensus 291 p~sLgnl-hL~~L~leGNPlrT--iRr~ii~~gT~~vLKyLrs-~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tki 366 (565)
T KOG0472|consen 291 PYSLGNL-HLKFLALEGNPLRT--IRREIISKGTQEVLKYLRS-KIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKI 366 (565)
T ss_pred Ccccccc-eeeehhhcCCchHH--HHHHHHcccHHHHHHHHHH-hhccCCCCCCcccccccCCCCCCcccchhhhhhhhh
Confidence 4444444 44555555443211 00000000 00100 0000000000 0000000 0012456
Q ss_pred EEcccccCCCCchhhhhccc--cccEEEccCCeeeccCCccccCCCCCcEEEccCCccccccccccccCCCCCCCCeEEE
Q 008876 335 LDLSVNHLSGSIPAWIGSLT--QLYSLNLSRNSLVSSIPETITNLQDLVLLDLHSNKLTGSISQVFKIGQRFPDGSLTYI 412 (550)
Q Consensus 335 L~l~~~~~~~~~~~~~~~~~--~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~L~~L 412 (550)
|++++-+++..-...|..-. -+..+++++|++. +.+..+..+..+.+.-+..+++.+..+..++.. ++|+.|
T Consensus 367 L~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l-----~kLt~L 440 (565)
T KOG0472|consen 367 LDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNKISFVPLELSQL-----QKLTFL 440 (565)
T ss_pred hcccccccccCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHHHHHHhhcCccccchHHHHhh-----hcceee
Confidence 66666666644444444322 3666777777765 334444333333333333333333444444433 688888
Q ss_pred eccCCCCCCCCCCCCCCCcccccEEeccCCcccCcCCcccccccccceeeCCCCccceeCCCcCCCCCCCcEEECcCccc
Q 008876 413 DLSDNGFSSGIELTGGGGQTGIRFLNLSRNVLEGQIPVSVGRLRSLRSLDLSYNKLGYVLPGSLANESSLETLKLQNNRF 492 (550)
Q Consensus 413 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~~ 492 (550)
++++|.+.+ ++. .+..+..|++|+++.|.+. ..|+.+..+..++.+-.++|++....+..+.++.+|++|++.+|++
T Consensus 441 ~L~NN~Ln~-LP~-e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdl 517 (565)
T KOG0472|consen 441 DLSNNLLND-LPE-EMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDL 517 (565)
T ss_pred ecccchhhh-cch-hhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCch
Confidence 888877654 332 4456666888888888887 5677777777888888888888877777788888999999999988
Q ss_pred cccCCCcccCCCcCceeecCCcccc
Q 008876 493 TGRIPSEYLKLKKLKELDLSHNLLV 517 (550)
Q Consensus 493 ~~~~~~~~~~l~~L~~L~l~~n~~~ 517 (550)
. .+|+.++++++|++|+++||++.
T Consensus 518 q-~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 518 Q-QIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred h-hCChhhccccceeEEEecCCccC
Confidence 8 67888899999999999999987
No 6
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.97 E-value=5.7e-33 Score=272.56 Aligned_cols=477 Identities=29% Similarity=0.321 Sum_probs=330.1
Q ss_pred cCCCCCccCCCCCcEEeCCCccCCCCCchhhhhccCCcEEEcCCCcCCCcccccccCCcccchhhccccccCccCchhcc
Q 008876 28 GIIPPSIGCLQNLKKLYLYGNKLSGSVPESISKLLKLEELHLHENRLSGTLSSSLGNLKNINQLLMHTNQFTGVIPDSFT 107 (550)
Q Consensus 28 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~ 107 (550)
..+|..+..-..+..|++..|.+.+.-.+.+.+..+|++|+++++.+. ..|..+..+.+|+.|+++.|.+. ..|....
T Consensus 11 ~~ip~~i~~~~~~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i~-~vp~s~~ 88 (1081)
T KOG0618|consen 11 ELIPEQILNNEALQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYIR-SVPSSCS 88 (1081)
T ss_pred cccchhhccHHHHHhhhccccccccCchHHhhheeeeEEeeccccccc-cCCchhhhHHHHhhcccchhhHh-hCchhhh
Confidence 355655555555777777777655333444555666888888888776 67777888888888888888776 5566677
Q ss_pred CCCCCCEEEcccccCccccchhhcCCCCcCeEeccCccccCcCCcccCCCCCCCEEEccCCcccccccCCCCCCCCCCcc
Q 008876 108 NLTNLVRLDLHCNYLNGYIPEKIGELQLLEQLDFSNNLLRGKLPPSLCNLTVISVLYLDNNKLEGAIPFPSSPGQMPSLG 187 (550)
Q Consensus 108 ~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~ 187 (550)
.+.+|+++++.++..+ ..|..+..+++|.+|++++|.+. ..|..+..+..++++..++|... ..++... ++
T Consensus 89 ~~~~l~~lnL~~n~l~-~lP~~~~~lknl~~LdlS~N~f~-~~Pl~i~~lt~~~~~~~s~N~~~------~~lg~~~-ik 159 (1081)
T KOG0618|consen 89 NMRNLQYLNLKNNRLQ-SLPASISELKNLQYLDLSFNHFG-PIPLVIEVLTAEEELAASNNEKI------QRLGQTS-IK 159 (1081)
T ss_pred hhhcchhheeccchhh-cCchhHHhhhcccccccchhccC-CCchhHHhhhHHHHHhhhcchhh------hhhcccc-ch
Confidence 7888888888887776 67778888888888888888776 55666777777777777777211 1112211 66
Q ss_pred EEEcCCCcccccCCCCccCCCCCcEEEcccCcccCcchhhccCCCCCcEEEecCccccCCCcccccCCCcccEEEccCCc
Q 008876 188 FLRLQDNNLTGKIPPTFGYLASLRRVSLANNKLEGAIPTSLGNLQDLTELYLNGNQLSGQIPKSISQLSQLIFLSISRNQ 267 (550)
Q Consensus 188 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 267 (550)
.+++..+.+...+...+..+.. .+++++|.+. . -.+..+++|+.+....+++.... -.-++++.|..+.|.
T Consensus 160 ~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~-~--~dls~~~~l~~l~c~rn~ls~l~----~~g~~l~~L~a~~n~ 230 (1081)
T KOG0618|consen 160 KLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEME-V--LDLSNLANLEVLHCERNQLSELE----ISGPSLTALYADHNP 230 (1081)
T ss_pred hhhhhhhhcccchhcchhhhhe--eeecccchhh-h--hhhhhccchhhhhhhhcccceEE----ecCcchheeeeccCc
Confidence 6666666555444444444444 5777777765 2 23456677777777776654221 123677788888777
Q ss_pred ccCCCCCcccCCCCccEEEccCCcccCCccchhcccCCCCcEEEeecccccccCCccccCCCCCccEEEcccccCCCCch
Q 008876 268 IEGPLPSGMFSLQNLQTLDLSFNLLNLSSIPMWMAELPSLSRVYLAGCGIKGKIPEFFRTTPSPLQELDLSVNHLSGSIP 347 (550)
Q Consensus 268 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 347 (550)
++.... ...-.+|++++++.+.+ ..++.|...+++|+.+.+..+.+. ..+..+..... |+.+.+..|.+. .++
T Consensus 231 l~~~~~--~p~p~nl~~~dis~n~l--~~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~-L~~l~~~~nel~-yip 303 (1081)
T KOG0618|consen 231 LTTLDV--HPVPLNLQYLDISHNNL--SNLPEWIGACANLEALNANHNRLV-ALPLRISRITS-LVSLSAAYNELE-YIP 303 (1081)
T ss_pred ceeecc--ccccccceeeecchhhh--hcchHHHHhcccceEecccchhHH-hhHHHHhhhhh-HHHHHhhhhhhh-hCC
Confidence 662222 22335778888887743 345678888888888888887774 34444444444 777777777766 444
Q ss_pred hhhhccccccEEEccCCeeeccCCccccCCCC-CcEEEccCCccccccccccccCCCCCCCCeEEEeccCCCCCCCCCCC
Q 008876 348 AWIGSLTQLYSLNLSRNSLVSSIPETITNLQD-LVLLDLHSNKLTGSISQVFKIGQRFPDGSLTYIDLSDNGFSSGIELT 426 (550)
Q Consensus 348 ~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~-L~~L~l~~~~i~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 426 (550)
......+.|++|++..|.+...+...+..... ++.+..+.|.+.... .......+.|+.|.+.+|.+++.+-.
T Consensus 304 ~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp-----~~~e~~~~~Lq~LylanN~Ltd~c~p- 377 (1081)
T KOG0618|consen 304 PFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLP-----SYEENNHAALQELYLANNHLTDSCFP- 377 (1081)
T ss_pred CcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccc-----cccchhhHHHHHHHHhcCcccccchh-
Confidence 45566778888888888877655544443333 666777777665443 11112226788888888888875544
Q ss_pred CCCCcccccEEeccCCcccCcCCcccccccccceeeCCCCccceeCCCcCCCCCCCcEEECcCccccccCCCcccCCCcC
Q 008876 427 GGGGQTGIRFLNLSRNVLEGQIPVSVGRLRSLRSLDLSYNKLGYVLPGSLANESSLETLKLQNNRFTGRIPSEYLKLKKL 506 (550)
Q Consensus 427 ~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L 506 (550)
.+.++++|+.|++++|.+.......+.+++.|++|+++||+++ .+|+....+..|++|...+|.+. ..| .+..++.|
T Consensus 378 ~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL 454 (1081)
T KOG0618|consen 378 VLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQL 454 (1081)
T ss_pred hhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcc
Confidence 7888999999999999998777777888999999999999998 45678888889999999888888 777 68889999
Q ss_pred ceeecCCccccccCCCCCC-CCCccccCCCCCCCC
Q 008876 507 KELDLSHNLLVGEIPAGKP-LSDFPESSFSGNRGL 540 (550)
Q Consensus 507 ~~L~l~~n~~~~~~~~~~~-~~~~~~l~~~~~~~~ 540 (550)
+.+|++.|.+....-.... ++.+++|++.||+|+
T Consensus 455 ~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~l 489 (1081)
T KOG0618|consen 455 KVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTRL 489 (1081)
T ss_pred eEEecccchhhhhhhhhhCCCcccceeeccCCccc
Confidence 9999999998865544434 488999999999873
No 7
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.96 E-value=9.8e-33 Score=270.93 Aligned_cols=448 Identities=27% Similarity=0.325 Sum_probs=281.7
Q ss_pred CCCCCcEEeCCCccCCCCCchhhhhccCCcEEEcCCCcCCCcccccccCCcccchhhccccccCccCchhccCCCCCCEE
Q 008876 36 CLQNLKKLYLYGNKLSGSVPESISKLLKLEELHLHENRLSGTLSSSLGNLKNINQLLMHTNQFTGVIPDSFTNLTNLVRL 115 (550)
Q Consensus 36 ~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L 115 (550)
+.-+|+.|+|+++.+. .+|..+..+++|+.|+++.|.+. ..|....++.+|+++.+..++.. ..|..++.+.+|+.|
T Consensus 43 ~~v~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i~-~vp~s~~~~~~l~~lnL~~n~l~-~lP~~~~~lknl~~L 119 (1081)
T KOG0618|consen 43 KRVKLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYIR-SVPSSCSNMRNLQYLNLKNNRLQ-SLPASISELKNLQYL 119 (1081)
T ss_pred heeeeEEeeccccccc-cCCchhhhHHHHhhcccchhhHh-hCchhhhhhhcchhheeccchhh-cCchhHHhhhccccc
Confidence 3333555555554443 34444444455555555544443 33444444455555555444433 344444445555555
Q ss_pred EcccccCccccchhhcCCCC-------------------cCeEeccCccccCcCCcccCCCCCCCEEEccCCcccccccC
Q 008876 116 DLHCNYLNGYIPEKIGELQL-------------------LEQLDFSNNLLRGKLPPSLCNLTVISVLYLDNNKLEGAIPF 176 (550)
Q Consensus 116 ~l~~~~~~~~~~~~l~~l~~-------------------L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~ 176 (550)
+++.|.... .|..+..+.. ++++++..+.+.+.++..+..+.. .+++++|... .
T Consensus 120 dlS~N~f~~-~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~-~--- 192 (1081)
T KOG0618|consen 120 DLSFNHFGP-IPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEME-V--- 192 (1081)
T ss_pred ccchhccCC-CchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhhe--eeecccchhh-h---
Confidence 554444431 1222222222 555555555555455555554444 5677776554 1
Q ss_pred CCCCCCCCCccEEEcCCCcccccCCCCccCCCCCcEEEcccCcccCcchhhccCCCCCcEEEecCccccCCCcccccCCC
Q 008876 177 PSSPGQMPSLGFLRLQDNNLTGKIPPTFGYLASLRRVSLANNKLEGAIPTSLGNLQDLTELYLNGNQLSGQIPKSISQLS 256 (550)
Q Consensus 177 ~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~ 256 (550)
..+.++++|+.+....+.+... -..-++++.|....|.+..... . ....+|++++++.+.+. ..++++..++
T Consensus 193 -~dls~~~~l~~l~c~rn~ls~l----~~~g~~l~~L~a~~n~l~~~~~-~-p~p~nl~~~dis~n~l~-~lp~wi~~~~ 264 (1081)
T KOG0618|consen 193 -LDLSNLANLEVLHCERNQLSEL----EISGPSLTALYADHNPLTTLDV-H-PVPLNLQYLDISHNNLS-NLPEWIGACA 264 (1081)
T ss_pred -hhhhhccchhhhhhhhcccceE----EecCcchheeeeccCcceeecc-c-cccccceeeecchhhhh-cchHHHHhcc
Confidence 3456667777777776655532 1223567777777776652221 1 12246777888877776 3447777778
Q ss_pred cccEEEccCCcccCCCCCcccCCCCccEEEccCCcccCCccchhcccCCCCcEEEeecccccccCCccccCCCCCccEEE
Q 008876 257 QLIFLSISRNQIEGPLPSGMFSLQNLQTLDLSFNLLNLSSIPMWMAELPSLSRVYLAGCGIKGKIPEFFRTTPSPLQELD 336 (550)
Q Consensus 257 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~ 336 (550)
+|+.+++..|+++ .++..+....+|+.+.+..| ....++.....+..|++|++..+.+.......+.....+++.+.
T Consensus 265 nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~n--el~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln 341 (1081)
T KOG0618|consen 265 NLEALNANHNRLV-ALPLRISRITSLVSLSAAYN--ELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLN 341 (1081)
T ss_pred cceEecccchhHH-hhHHHHhhhhhHHHHHhhhh--hhhhCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHh
Confidence 8888888887775 56666666777777777777 34445666667778888888887776555544444433466666
Q ss_pred cccccCCCCchhhhhccccccEEEccCCeeeccCCccccCCCCCcEEEccCCccccccccccccCCCCCCCCeEEEeccC
Q 008876 337 LSVNHLSGSIPAWIGSLTQLYSLNLSRNSLVSSIPETITNLQDLVLLDLHSNKLTGSISQVFKIGQRFPDGSLTYIDLSD 416 (550)
Q Consensus 337 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~L~~L~l~~ 416 (550)
.+.+++.......-..++.|+.|++.+|.+++.....+.++..||.|++++|++..++...+..+ +.|++|++||
T Consensus 342 ~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kl-----e~LeeL~LSG 416 (1081)
T KOG0618|consen 342 VSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKL-----EELEELNLSG 416 (1081)
T ss_pred hhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhch-----HHhHHHhccc
Confidence 67666653332222346778888888888888777778888889999999988887777666655 7888888888
Q ss_pred CCCCCCCCCCCCCCcccccEEeccCCcccCcCCcccccccccceeeCCCCccce-eCCCcCCCCCCCcEEECcCcccccc
Q 008876 417 NGFSSGIELTGGGGQTGIRFLNLSRNVLEGQIPVSVGRLRSLRSLDLSYNKLGY-VLPGSLANESSLETLKLQNNRFTGR 495 (550)
Q Consensus 417 ~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~i~~-~~~~~l~~l~~L~~L~l~~~~~~~~ 495 (550)
|+++.. + .....+..|++|...+|.+. ..| .+..++.|+.+|++.|.++. .+++..++ ++|++|+++||.-...
T Consensus 417 NkL~~L-p-~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~-p~LkyLdlSGN~~l~~ 491 (1081)
T KOG0618|consen 417 NKLTTL-P-DTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPS-PNLKYLDLSGNTRLVF 491 (1081)
T ss_pred chhhhh-h-HHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCCC-cccceeeccCCccccc
Confidence 887652 2 35667888999999999998 455 88899999999999998876 44555544 8999999999986655
Q ss_pred CCCcccCCCcCceeecCCc
Q 008876 496 IPSEYLKLKKLKELDLSHN 514 (550)
Q Consensus 496 ~~~~~~~l~~L~~L~l~~n 514 (550)
....+..+.++..+++.=+
T Consensus 492 d~~~l~~l~~l~~~~i~~~ 510 (1081)
T KOG0618|consen 492 DHKTLKVLKSLSQMDITLN 510 (1081)
T ss_pred chhhhHHhhhhhheecccC
Confidence 5556666666666666555
No 8
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.96 E-value=2.8e-32 Score=243.40 Aligned_cols=463 Identities=29% Similarity=0.387 Sum_probs=353.8
Q ss_pred CCccccccCcccEeeCCCCCCCCcCCCCCccCCCCCcEEeCCCccCCCCCchhhhhccCCcEEEcCCCcCCCcccccccC
Q 008876 5 LSPSISLLTSLEVLDLGGLVDLTGIIPPSIGCLQNLKKLYLYGNKLSGSVPESISKLLKLEELHLHENRLSGTLSSSLGN 84 (550)
Q Consensus 5 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~ 84 (550)
+...+.+++.+.+|+++.+. ...+|++++.+..+..++.+.+++. .+|+.+..+++|..++++.+.+. ..+..++.
T Consensus 60 l~~dl~nL~~l~vl~~~~n~--l~~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s~n~~~-el~~~i~~ 135 (565)
T KOG0472|consen 60 LREDLKNLACLTVLNVHDNK--LSQLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCSSNELK-ELPDSIGR 135 (565)
T ss_pred ccHhhhcccceeEEEeccch--hhhCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhcccccee-ecCchHHH
Confidence 44557788999999999843 3368999999999999999999987 89999999999999999999887 67888999
Q ss_pred CcccchhhccccccCccCchhccCCCCCCEEEcccccCccccchhhcCCCCcCeEeccCccccCcCCcccCCCCCCCEEE
Q 008876 85 LKNINQLLMHTNQFTGVIPDSFTNLTNLVRLDLHCNYLNGYIPEKIGELQLLEQLDFSNNLLRGKLPPSLCNLTVISVLY 164 (550)
Q Consensus 85 l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~ 164 (550)
+-.|..++-.+|++. ..|+++.++.++..+++.++.+....++.+. |+.|++++...|.++ .+|..++.+.+|..|+
T Consensus 136 ~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~-m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~Ly 212 (565)
T KOG0472|consen 136 LLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKALPENHIA-MKRLKHLDCNSNLLE-TLPPELGGLESLELLY 212 (565)
T ss_pred Hhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchhhCCHHHHH-HHHHHhcccchhhhh-cCChhhcchhhhHHHH
Confidence 999999999999998 6788899999999999999998855555555 999999999999887 7888899999999999
Q ss_pred ccCCcccccccCCCCCCCCCCccEEEcCCCcccccCCCCccCCCCCcEEEcccCcccCcchhhccCCCCCcEEEecCccc
Q 008876 165 LDNNKLEGAIPFPSSPGQMPSLGFLRLQDNNLTGKIPPTFGYLASLRRVSLANNKLEGAIPTSLGNLQDLTELYLNGNQL 244 (550)
Q Consensus 165 l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 244 (550)
+..|++... -.|..|..|+++.++.|.+.-...+...+++++..|++++|.+. ..|..+..+.+|+.||+++|.+
T Consensus 213 L~~Nki~~l----Pef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~i 287 (565)
T KOG0472|consen 213 LRRNKIRFL----PEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDI 287 (565)
T ss_pred hhhcccccC----CCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCcc
Confidence 999987633 26788999999999999887555566678999999999999998 6677788899999999999999
Q ss_pred cCCCcccccCCCcccEEEccCCcccCCCCCcccC------CCCccE----EEccCCcccCCcc-------chhcccCCCC
Q 008876 245 SGQIPKSISQLSQLIFLSISRNQIEGPLPSGMFS------LQNLQT----LDLSFNLLNLSSI-------PMWMAELPSL 307 (550)
Q Consensus 245 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~------~~~L~~----L~l~~~~~~~~~~-------~~~~~~~~~L 307 (550)
+ ..+..++++ .|+.|-+.+|.+... -..+.+ ++.|+. =.++...-+.... ........+.
T Consensus 288 s-~Lp~sLgnl-hL~~L~leGNPlrTi-Rr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~t 364 (565)
T KOG0472|consen 288 S-SLPYSLGNL-HLKFLALEGNPLRTI-RREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITT 364 (565)
T ss_pred c-cCCcccccc-eeeehhhcCCchHHH-HHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhh
Confidence 8 567778888 999999999976421 111111 111211 0111110000000 0112233456
Q ss_pred cEEEeecccccccCCccccCCCC-CccEEEcccccCCCCchhhhhccccccE-EEccCCeeeccCCccccCCCCCcEEEc
Q 008876 308 SRVYLAGCGIKGKIPEFFRTTPS-PLQELDLSVNHLSGSIPAWIGSLTQLYS-LNLSRNSLVSSIPETITNLQDLVLLDL 385 (550)
Q Consensus 308 ~~L~l~~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~L~~-L~l~~~~~~~~~~~~l~~~~~L~~L~l 385 (550)
+.|++++-.++....+.|..... -+..+++++|++. ..+..+..++.+.+ +.++++.+ +.++..++.+++|..|++
T Consensus 365 kiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~i-sfv~~~l~~l~kLt~L~L 442 (565)
T KOG0472|consen 365 KILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNKI-SFVPLELSQLQKLTFLDL 442 (565)
T ss_pred hhhcccccccccCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHHHHHHhhcCcc-ccchHHHHhhhcceeeec
Confidence 77888887777555555544332 2567889999887 44555555555443 45555544 477788889999999999
Q ss_pred cCCccccccccccccCCCCCCCCeEEEeccCCCCCCCCCCCCCCCcccccEEeccCCcccCcCCcccccccccceeeCCC
Q 008876 386 HSNKLTGSISQVFKIGQRFPDGSLTYIDLSDNGFSSGIELTGGGGQTGIRFLNLSRNVLEGQIPVSVGRLRSLRSLDLSY 465 (550)
Q Consensus 386 ~~~~i~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~ 465 (550)
+.|-+.+.+.+.+.. ..|+.|+++.|++.. .+ .....+..++++-.++|.+....+..+.++.+|.+||+.+
T Consensus 443 ~NN~Ln~LP~e~~~l------v~Lq~LnlS~NrFr~-lP-~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~n 514 (565)
T KOG0472|consen 443 SNNLLNDLPEEMGSL------VRLQTLNLSFNRFRM-LP-ECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQN 514 (565)
T ss_pred ccchhhhcchhhhhh------hhhheeccccccccc-ch-HHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCC
Confidence 988776655544432 469999999997643 11 2344556678888888999977777799999999999999
Q ss_pred CccceeCCCcCCCCCCCcEEECcCcccc
Q 008876 466 NKLGYVLPGSLANESSLETLKLQNNRFT 493 (550)
Q Consensus 466 n~i~~~~~~~l~~l~~L~~L~l~~~~~~ 493 (550)
|.+. .+|..++++++|++|.+.||++.
T Consensus 515 Ndlq-~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 515 NDLQ-QIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred Cchh-hCChhhccccceeEEEecCCccC
Confidence 9998 56778999999999999999998
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.95 E-value=6.4e-30 Score=240.80 Aligned_cols=368 Identities=26% Similarity=0.333 Sum_probs=248.9
Q ss_pred cccchhhccccccC-ccCchhccCCCCCCEEEcccccCccccchhhcCCCCcCeEeccCccccCcCCcccCCCCCCCEEE
Q 008876 86 KNINQLLMHTNQFT-GVIPDSFTNLTNLVRLDLHCNYLNGYIPEKIGELQLLEQLDFSNNLLRGKLPPSLCNLTVISVLY 164 (550)
Q Consensus 86 ~~L~~L~l~~~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~ 164 (550)
+-.+-.++++|.+. +.+|.....+++++.|.+....+. .+|+.++.+++|++|.+.+|++. .+-..++.++.|+.+.
T Consensus 7 pFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~-~vhGELs~Lp~LRsv~ 84 (1255)
T KOG0444|consen 7 PFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI-SVHGELSDLPRLRSVI 84 (1255)
T ss_pred ceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH-hhhhhhccchhhHHHh
Confidence 34455566666665 456777777777888877777666 56777777888888888877766 4455677777777777
Q ss_pred ccCCcccccccCCCCCCCCCCccEEEcCCCcccccCCCCccCCCCCcEEEcccCcccCcchhhccCCCCCcEEEecCccc
Q 008876 165 LDNNKLEGAIPFPSSPGQMPSLGFLRLQDNNLTGKIPPTFGYLASLRRVSLANNKLEGAIPTSLGNLQDLTELYLNGNQL 244 (550)
Q Consensus 165 l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 244 (550)
++.|++.+ ..++..+..+..|+.|++++|++. ..|..+...+++-.|+++.|.+..+....+.++..|-.|+++.|++
T Consensus 85 ~R~N~LKn-sGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrL 162 (1255)
T KOG0444|consen 85 VRDNNLKN-SGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRL 162 (1255)
T ss_pred hhcccccc-CCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchh
Confidence 77776653 234566677788888888888877 4566677778888888888888766666677778888888888887
Q ss_pred cCCCcccccCCCcccEEEccCCcccCCCCCcccCCCCccEEEccCCcccCCccchhcccCCCCcEEEeecccccccCCcc
Q 008876 245 SGQIPKSISQLSQLIFLSISRNQIEGPLPSGMFSLQNLQTLDLSFNLLNLSSIPMWMAELPSLSRVYLAGCGIKGKIPEF 324 (550)
Q Consensus 245 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 324 (550)
. ..+.....+..|++|++++|.+.......+.++.+|+.|++++..-+...++..+..+.+|..++++.+++.
T Consensus 163 e-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp------ 235 (1255)
T KOG0444|consen 163 E-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP------ 235 (1255)
T ss_pred h-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC------
Confidence 6 556667777888888888887654333344456677777777766566666666666666666666555443
Q ss_pred ccCCCCCccEEEcccccCCCCchhhhhccccccEEEccCCeeeccCCccccCCCCCcEEEccCCccccccccccccCCCC
Q 008876 325 FRTTPSPLQELDLSVNHLSGSIPAWIGSLTQLYSLNLSRNSLVSSIPETITNLQDLVLLDLHSNKLTGSISQVFKIGQRF 404 (550)
Q Consensus 325 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~ 404 (550)
..+.++...++|+.|++++|.++.. ........+|++|++++|+++..+..... .
T Consensus 236 --------------------~vPecly~l~~LrrLNLS~N~iteL-~~~~~~W~~lEtLNlSrNQLt~LP~avcK-L--- 290 (1255)
T KOG0444|consen 236 --------------------IVPECLYKLRNLRRLNLSGNKITEL-NMTEGEWENLETLNLSRNQLTVLPDAVCK-L--- 290 (1255)
T ss_pred --------------------cchHHHhhhhhhheeccCcCceeee-eccHHHHhhhhhhccccchhccchHHHhh-h---
Confidence 4455555666666666666666532 22333445666666666666544332211 1
Q ss_pred CCCCeEEEeccCCCCCCCCCCCCCCCcccccEEeccCCcccCcCCcccccccccceeeCCCCccceeCCCcCCCCCCCcE
Q 008876 405 PDGSLTYIDLSDNGFSSGIELTGGGGQTGIRFLNLSRNVLEGQIPVSVGRLRSLRSLDLSYNKLGYVLPGSLANESSLET 484 (550)
Q Consensus 405 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~ 484 (550)
++|+.|.+.+|++.-......+..+..|+++...+|.+. .+|+++..|.+|+.|.|+.|.+. .+|+++.-++-|+.
T Consensus 291 --~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~v 366 (1255)
T KOG0444|consen 291 --TKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKV 366 (1255)
T ss_pred --HHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcce
Confidence 455555555555543223335667777777777777776 67888888888888888888766 46777777788888
Q ss_pred EECcCcccc
Q 008876 485 LKLQNNRFT 493 (550)
Q Consensus 485 L~l~~~~~~ 493 (550)
|++.+|+..
T Consensus 367 LDlreNpnL 375 (1255)
T KOG0444|consen 367 LDLRENPNL 375 (1255)
T ss_pred eeccCCcCc
Confidence 888888766
No 10
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.94 E-value=1.8e-29 Score=237.80 Aligned_cols=350 Identities=28% Similarity=0.387 Sum_probs=183.8
Q ss_pred CCccccccCcccEeeCCCCCCCCcCCCCCccCCCCCcEEeCCCccCCCCCchhhhhccCCcEEEcCCCcCCC-ccccccc
Q 008876 5 LSPSISLLTSLEVLDLGGLVDLTGIIPPSIGCLQNLKKLYLYGNKLSGSVPESISKLLKLEELHLHENRLSG-TLSSSLG 83 (550)
Q Consensus 5 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~ 83 (550)
+|.....++++++|.+.. .. ...+|+.++.+.+|++|+++.|++. .+...++.+|.|+.+.++.|.+.. -.|..+.
T Consensus 24 FP~~v~qMt~~~WLkLnr-t~-L~~vPeEL~~lqkLEHLs~~HN~L~-~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF 100 (1255)
T KOG0444|consen 24 FPHDVEQMTQMTWLKLNR-TK-LEQVPEELSRLQKLEHLSMAHNQLI-SVHGELSDLPRLRSVIVRDNNLKNSGIPTDIF 100 (1255)
T ss_pred CchhHHHhhheeEEEech-hh-hhhChHHHHHHhhhhhhhhhhhhhH-hhhhhhccchhhHHHhhhccccccCCCCchhc
Confidence 444444444444444433 11 2234444444555555555544444 222334444555555555444321 2444555
Q ss_pred CCcccchhhccccccCccCchhccCCCCCCEEEcccccCccccchhhcCCCCcCeEeccCccccCcCCcccCCCCCCCEE
Q 008876 84 NLKNINQLLMHTNQFTGVIPDSFTNLTNLVRLDLHCNYLNGYIPEKIGELQLLEQLDFSNNLLRGKLPPSLCNLTVISVL 163 (550)
Q Consensus 84 ~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L 163 (550)
++..|+.|++++|++. ..|..+...+++-.|++++|.|.++....|.++..|-.|++++|++. .+|..+..+..|+.|
T Consensus 101 ~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL 178 (1255)
T KOG0444|consen 101 RLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTL 178 (1255)
T ss_pred ccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhh
Confidence 5666666666666655 44555555566666666666665554445555666666666666655 455555666666666
Q ss_pred EccCCcccccccCCCCCCCCCCccEEEcCCCccc-ccCCCCccCCCCCcEEEcccCcccCcchhhccCCCCCcEEEecCc
Q 008876 164 YLDNNKLEGAIPFPSSPGQMPSLGFLRLQDNNLT-GKIPPTFGYLASLRRVSLANNKLEGAIPTSLGNLQDLTELYLNGN 242 (550)
Q Consensus 164 ~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 242 (550)
.+++|.+.-..- ..+..+.+|..|.+++.+-+ ..+|..+..+.+|..++++.|.+. .+|+++.++++|+.|++++|
T Consensus 179 ~Ls~NPL~hfQL--rQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N 255 (1255)
T KOG0444|consen 179 KLSNNPLNHFQL--RQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGN 255 (1255)
T ss_pred hcCCChhhHHHH--hcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcC
Confidence 666665432211 22333444445555554332 345555556666666666666665 55666666666666666666
Q ss_pred cccCCCcccccCCCcccEEEccCCcccCCCCCcccCCCCccEEEccCCcccCCccchhcccCCCCcEEEeecccccccCC
Q 008876 243 QLSGQIPKSISQLSQLIFLSISRNQIEGPLPSGMFSLQNLQTLDLSFNLLNLSSIPMWMAELPSLSRVYLAGCGIKGKIP 322 (550)
Q Consensus 243 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 322 (550)
.+++. ......-.+|++|+++.|+++ .+|+++..+++|+.|.+.+|.++.++++..+..+.+|+.+...++.+. ..+
T Consensus 256 ~iteL-~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVP 332 (1255)
T KOG0444|consen 256 KITEL-NMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVP 332 (1255)
T ss_pred ceeee-eccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCc
Confidence 66532 222233355666666666666 556666666666666666666666666666666666655555554433 334
Q ss_pred ccccCCCCCccEEEcccccCCCCchhhhhccccccEEEccCCeee
Q 008876 323 EFFRTTPSPLQELDLSVNHLSGSIPAWIGSLTQLYSLNLSRNSLV 367 (550)
Q Consensus 323 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 367 (550)
+.++.+.+ |+.|.++.|++. .++..+.-++.|+.|++..|+-.
T Consensus 333 EglcRC~k-L~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnL 375 (1255)
T KOG0444|consen 333 EGLCRCVK-LQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNL 375 (1255)
T ss_pred hhhhhhHH-HHHhccccccee-echhhhhhcCCcceeeccCCcCc
Confidence 44443333 444555444443 23334444444444555444433
No 11
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.88 E-value=3.6e-21 Score=211.30 Aligned_cols=339 Identities=24% Similarity=0.325 Sum_probs=205.2
Q ss_pred CCccCCCCCcEEeCCCcc------CCCCCchhhhhcc-CCcEEEcCCCcCCCcccccccCCcccchhhccccccCccCch
Q 008876 32 PSIGCLQNLKKLYLYGNK------LSGSVPESISKLL-KLEELHLHENRLSGTLSSSLGNLKNINQLLMHTNQFTGVIPD 104 (550)
Q Consensus 32 ~~l~~l~~L~~L~l~~~~------~~~~~~~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~ 104 (550)
.+|.+|++|+.|.+..+. ....+|+.|..++ +|+.|++.++.+. ..|..+ ...+|+.|++.++.+. .++.
T Consensus 552 ~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~L~~ 628 (1153)
T PLN03210 552 NAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-KLWD 628 (1153)
T ss_pred HHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-cccc
Confidence 345666666666664432 1123455555543 4667766666554 445444 3566666667666655 3455
Q ss_pred hccCCCCCCEEEcccccCccccchhhcCCCCcCeEeccCccccCcCCcccCCCCCCCEEEccCCcccccccCCCCCCCCC
Q 008876 105 SFTNLTNLVRLDLHCNYLNGYIPEKIGELQLLEQLDFSNNLLRGKLPPSLCNLTVISVLYLDNNKLEGAIPFPSSPGQMP 184 (550)
Q Consensus 105 ~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 184 (550)
.+..+++|+.++++++......+ .+..+++|+.|++.+|.....+|..+.++++|+.|++++|......+ ..+ +++
T Consensus 629 ~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp--~~i-~l~ 704 (1153)
T PLN03210 629 GVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILP--TGI-NLK 704 (1153)
T ss_pred ccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccC--CcC-CCC
Confidence 56666677777766554322333 35566677777776665444566666666677777776664333222 222 466
Q ss_pred CccEEEcCCCcccccCCCCccCCCCCcEEEcccCcccCcchhhccCCCCCcEEEecCccccC-------CCcccccCCCc
Q 008876 185 SLGFLRLQDNNLTGKIPPTFGYLASLRRVSLANNKLEGAIPTSLGNLQDLTELYLNGNQLSG-------QIPKSISQLSQ 257 (550)
Q Consensus 185 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~-------~~~~~l~~~~~ 257 (550)
+|+.|++++|......+.. ..+|++|++.++.+. ..|..+ .+++|++|.+.++.... ..+.....+++
T Consensus 705 sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~s 779 (1153)
T PLN03210 705 SLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-EFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPS 779 (1153)
T ss_pred CCCEEeCCCCCCccccccc---cCCcCeeecCCCccc-cccccc-cccccccccccccchhhccccccccchhhhhcccc
Confidence 6777777766543333321 346677777776655 233332 45666666665532210 01111223467
Q ss_pred ccEEEccCCcccCCCCCcccCCCCccEEEccCCcccCCccchhcccCCCCcEEEeecccccccCCccccCCCCCccEEEc
Q 008876 258 LIFLSISRNQIEGPLPSGMFSLQNLQTLDLSFNLLNLSSIPMWMAELPSLSRVYLAGCGIKGKIPEFFRTTPSPLQELDL 337 (550)
Q Consensus 258 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l 337 (550)
|+.|++++|.....+|..+..+++|+.|++++|. ....++... .+++|+.|++++|......+ ....+++.|++
T Consensus 780 L~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~-~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p----~~~~nL~~L~L 853 (1153)
T PLN03210 780 LTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCI-NLETLPTGI-NLESLESLDLSGCSRLRTFP----DISTNISDLNL 853 (1153)
T ss_pred chheeCCCCCCccccChhhhCCCCCCEEECCCCC-CcCeeCCCC-CccccCEEECCCCCcccccc----ccccccCEeEC
Confidence 8888888877665677777778888888888764 222344433 57788888888876443332 23345888999
Q ss_pred ccccCCCCchhhhhccccccEEEccCCeeeccCCccccCCCCCcEEEccCCc
Q 008876 338 SVNHLSGSIPAWIGSLTQLYSLNLSRNSLVSSIPETITNLQDLVLLDLHSNK 389 (550)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 389 (550)
+++.+. .++..+..+++|+.|++++|+.....+.....++.|+.+++++|.
T Consensus 854 s~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 854 SRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred CCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence 888887 456677888899999998877655556666778888888888873
No 12
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.87 E-value=2.2e-20 Score=205.08 Aligned_cols=106 Identities=18% Similarity=0.144 Sum_probs=51.5
Q ss_pred CCeEEEeccCCCCCCCCCCCCCCCcccccEEeccCCcccCcCCcccccccccceeeCCCCccceeCCCcCCCCCCCcEEE
Q 008876 407 GSLTYIDLSDNGFSSGIELTGGGGQTGIRFLNLSRNVLEGQIPVSVGRLRSLRSLDLSYNKLGYVLPGSLANESSLETLK 486 (550)
Q Consensus 407 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~ 486 (550)
++|+.|++++|...+.++.. ..+++|+.|++++|......+.. .++|+.|++++|.++ .+|.++..+++|+.|+
T Consensus 802 ~~L~~L~Ls~C~~L~~LP~~--~~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~ 875 (1153)
T PLN03210 802 HKLEHLEIENCINLETLPTG--INLESLESLDLSGCSRLRTFPDI---STNISDLNLSRTGIE-EVPWWIEKFSNLSFLD 875 (1153)
T ss_pred CCCCEEECCCCCCcCeeCCC--CCccccCEEECCCCCcccccccc---ccccCEeECCCCCCc-cChHHHhcCCCCCEEE
Confidence 34555555544433323221 13455555555554432222221 234555555555555 3444555555566666
Q ss_pred CcCccccccCCCcccCCCcCceeecCCccccc
Q 008876 487 LQNNRFTGRIPSEYLKLKKLKELDLSHNLLVG 518 (550)
Q Consensus 487 l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~ 518 (550)
+++|.....+|..+..+++|+.+++++|.-..
T Consensus 876 L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~ 907 (1153)
T PLN03210 876 MNGCNNLQRVSLNISKLKHLETVDFSDCGALT 907 (1153)
T ss_pred CCCCCCcCccCcccccccCCCeeecCCCcccc
Confidence 65555444455555555556666666554443
No 13
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.82 E-value=5.3e-22 Score=177.70 Aligned_cols=286 Identities=22% Similarity=0.203 Sum_probs=174.4
Q ss_pred CcEEeCCCccCCCCCchhhhhccCCcEEEcCCCcCCCcccccccCCcccchhhccc-cccCccCchhccCCCCCCEEEcc
Q 008876 40 LKKLYLYGNKLSGSVPESISKLLKLEELHLHENRLSGTLSSSLGNLKNINQLLMHT-NQFTGVIPDSFTNLTNLVRLDLH 118 (550)
Q Consensus 40 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~l~~l~~L~~L~l~ 118 (550)
-..+.+..|+++..-+.+|..+++|+.|||++|.++.+.|.+|..++.|..|-+.+ |+|++.-.++|.++..++.|.+.
T Consensus 69 tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllN 148 (498)
T KOG4237|consen 69 TVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLN 148 (498)
T ss_pred ceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcC
Confidence 45677788888866677788888888888888888777788888888877777766 77776656667888888888887
Q ss_pred cccCccccchhhcCCCCcCeEeccCccccCcCCcccCCCCCCCEEEccCCcccccccCCCCCCCCCCccEEEcCCCcccc
Q 008876 119 CNYLNGYIPEKIGELQLLEQLDFSNNLLRGKLPPSLCNLTVISVLYLDNNKLEGAIPFPSSPGQMPSLGFLRLQDNNLTG 198 (550)
Q Consensus 119 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 198 (550)
-+.+..+..++|..+++|..|.+.++.+....-..+..+..++.+.+-.|.+... .+++.+.... .
T Consensus 149 an~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icd-------CnL~wla~~~-------a 214 (498)
T KOG4237|consen 149 ANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICD-------CNLPWLADDL-------A 214 (498)
T ss_pred hhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccc-------cccchhhhHH-------h
Confidence 7777766777788888888888888776633333566666666666555543211 1111111100 0
Q ss_pred cCCCCccCCCCCcEEEcccCcccCcchhhccCCCCCcEE----EecCccccCCCcccccCCCcccEEEccCCcccCCCCC
Q 008876 199 KIPPTFGYLASLRRVSLANNKLEGAIPTSLGNLQDLTEL----YLNGNQLSGQIPKSISQLSQLIFLSISRNQIEGPLPS 274 (550)
Q Consensus 199 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L----~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~ 274 (550)
..+-.++++.......+...++.......+... ++.+ .-..+.........|..+++|+++++++|+++..-..
T Consensus 215 ~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~--~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~ 292 (498)
T KOG4237|consen 215 MNPIETSGARCVSPYRLYYKRINQEDARKFLCS--LESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDG 292 (498)
T ss_pred hchhhcccceecchHHHHHHHhcccchhhhhhh--HHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhh
Confidence 111112222223333333333332222222211 1211 1111122222334567778888888888887766666
Q ss_pred cccCCCCccEEEccCCcccCCccchhcccCCCCcEEEeecccccccCCccccCCCCCccEEEcccccCC
Q 008876 275 GMFSLQNLQTLDLSFNLLNLSSIPMWMAELPSLSRVYLAGCGIKGKIPEFFRTTPSPLQELDLSVNHLS 343 (550)
Q Consensus 275 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 343 (550)
+|.....+++|.+..|.+... -...|..+..|++|.+.+|.++...+..|..... |.+|.+-.|++.
T Consensus 293 aFe~~a~l~eL~L~~N~l~~v-~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~-l~~l~l~~Np~~ 359 (498)
T KOG4237|consen 293 AFEGAAELQELYLTRNKLEFV-SSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFS-LSTLNLLSNPFN 359 (498)
T ss_pred hhcchhhhhhhhcCcchHHHH-HHHhhhccccceeeeecCCeeEEEecccccccce-eeeeehccCccc
Confidence 677777788888877754433 2335666777777777777777666666655554 777777776654
No 14
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.81 E-value=1.3e-21 Score=175.32 Aligned_cols=278 Identities=23% Similarity=0.271 Sum_probs=181.4
Q ss_pred ccEeeCCCCCCCCcCCCCCccCCCCCcEEeCCCccCCCCCchhhhhccCCcEEEcCC-CcCCCcccccccCCcccchhhc
Q 008876 15 LEVLDLGGLVDLTGIIPPSIGCLQNLKKLYLYGNKLSGSVPESISKLLKLEELHLHE-NRLSGTLSSSLGNLKNINQLLM 93 (550)
Q Consensus 15 L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~L~l 93 (550)
-..|.|.. +.+....+.+|+.+++||.|+++.|.+..+.|.+|..+++|..|.+.+ |++.+.....|..+..|+.|.+
T Consensus 69 tveirLdq-N~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLll 147 (498)
T KOG4237|consen 69 TVEIRLDQ-NQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLL 147 (498)
T ss_pred ceEEEecc-CCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhc
Confidence 44567766 566766777899999999999999999989999999999988887776 8898666778999999999999
Q ss_pred cccccCccCchhccCCCCCCEEEcccccCccccchhhcCCCCcCeEeccCcccc------------CcCCcccCCCCCCC
Q 008876 94 HTNQFTGVIPDSFTNLTNLVRLDLHCNYLNGYIPEKIGELQLLEQLDFSNNLLR------------GKLPPSLCNLTVIS 161 (550)
Q Consensus 94 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~------------~~~~~~l~~~~~L~ 161 (550)
.-+++..+..++|..++++..|.+..|.++.+-...|..+..++.+.+..+.+- .+.+..++..+...
T Consensus 148 Nan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~ 227 (498)
T KOG4237|consen 148 NANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVS 227 (498)
T ss_pred ChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecc
Confidence 999998888899999999999999999888665668888999999888766521 11111111111111
Q ss_pred EEEccCCcccccccCCCCCCCCCCccEEEcCCCcc-cccCCCCccCCCCCcEEEcccCcccCcchhhccCCCCCcEEEec
Q 008876 162 VLYLDNNKLEGAIPFPSSPGQMPSLGFLRLQDNNL-TGKIPPTFGYLASLRRVSLANNKLEGAIPTSLGNLQDLTELYLN 240 (550)
Q Consensus 162 ~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~-~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~ 240 (550)
-..+.+..+..... ........++.+=-.+.+.. ..-....|..+++|+.+++++|.++.+...+|.+..++++|.+.
T Consensus 228 p~rl~~~Ri~q~~a-~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~ 306 (498)
T KOG4237|consen 228 PYRLYYKRINQEDA-RKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLT 306 (498)
T ss_pred hHHHHHHHhcccch-hhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcC
Confidence 11111111100000 00000001111101111111 11122345667777777777777776666677777777777777
Q ss_pred CccccCCCcccccCCCcccEEEccCCcccCCCCCcccCCCCccEEEccCCcccC
Q 008876 241 GNQLSGQIPKSISQLSQLIFLSISRNQIEGPLPSGMFSLQNLQTLDLSFNLLNL 294 (550)
Q Consensus 241 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 294 (550)
.|++.......|.++..|+.|++.+|+++...+.+|.....|.+|.+-.|++..
T Consensus 307 ~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~C 360 (498)
T KOG4237|consen 307 RNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNC 360 (498)
T ss_pred cchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccC
Confidence 777665555566667777777777777776566666666667777776665443
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.72 E-value=9.2e-17 Score=163.98 Aligned_cols=161 Identities=29% Similarity=0.301 Sum_probs=88.1
Q ss_pred CccEEEcccccCCCCchhhhhccccccEEEccCCeeeccCCccccCCCCCcEEEccCCccccccccccccCCCCCCCCeE
Q 008876 331 PLQELDLSVNHLSGSIPAWIGSLTQLYSLNLSRNSLVSSIPETITNLQDLVLLDLHSNKLTGSISQVFKIGQRFPDGSLT 410 (550)
Q Consensus 331 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~L~ 410 (550)
+|+.|++++|.+... +. ....|+.|++++|.+..++. ...+|++|++++|+++..+.. . ++|+
T Consensus 303 ~L~~LdLS~N~L~~L-p~---lp~~L~~L~Ls~N~L~~LP~----lp~~Lq~LdLS~N~Ls~LP~l--p-------~~L~ 365 (788)
T PRK15387 303 GLQELSVSDNQLASL-PA---LPSELCKLWAYNNQLTSLPT----LPSGLQELSVSDNQLASLPTL--P-------SELY 365 (788)
T ss_pred ccceeECCCCccccC-CC---CcccccccccccCccccccc----cccccceEecCCCccCCCCCC--C-------cccc
Confidence 355555555555432 11 12345555666665543221 113566666666666543221 0 3556
Q ss_pred EEeccCCCCCCCCCCCCCCCcccccEEeccCCcccCcCCcccccccccceeeCCCCccceeCCCcCCCCCCCcEEECcCc
Q 008876 411 YIDLSDNGFSSGIELTGGGGQTGIRFLNLSRNVLEGQIPVSVGRLRSLRSLDLSYNKLGYVLPGSLANESSLETLKLQNN 490 (550)
Q Consensus 411 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~ 490 (550)
.|++++|.+.. ++. .+.+|+.|++++|.+++ +|.. .++|+.|++++|+++. +|.. ..+|+.|++++|
T Consensus 366 ~L~Ls~N~L~~-LP~----l~~~L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~Lss-IP~l---~~~L~~L~Ls~N 432 (788)
T PRK15387 366 KLWAYNNRLTS-LPA----LPSGLKELIVSGNRLTS-LPVL---PSELKELMVSGNRLTS-LPML---PSGLLSLSVYRN 432 (788)
T ss_pred eehhhcccccc-Ccc----cccccceEEecCCcccC-CCCc---ccCCCEEEccCCcCCC-CCcc---hhhhhhhhhccC
Confidence 66666666553 221 23456667777766663 2221 2456677777777664 3432 235666777777
Q ss_pred cccccCCCcccCCCcCceeecCCccccccCCC
Q 008876 491 RFTGRIPSEYLKLKKLKELDLSHNLLVGEIPA 522 (550)
Q Consensus 491 ~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~ 522 (550)
.++ .+|..+.++++|+.|++++|++.+..|.
T Consensus 433 qLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~ 463 (788)
T PRK15387 433 QLT-RLPESLIHLSSETTVNLEGNPLSERTLQ 463 (788)
T ss_pred ccc-ccChHHhhccCCCeEECCCCCCCchHHH
Confidence 766 4666666777777777777777665544
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.71 E-value=1.8e-16 Score=161.90 Aligned_cols=264 Identities=27% Similarity=0.312 Sum_probs=168.8
Q ss_pred CccEEEcCCCcccccCCCCccCCCCCcEEEcccCcccCcchhhccCCCCCcEEEecCccccCCCcccccCCCcccEEEcc
Q 008876 185 SLGFLRLQDNNLTGKIPPTFGYLASLRRVSLANNKLEGAIPTSLGNLQDLTELYLNGNQLSGQIPKSISQLSQLIFLSIS 264 (550)
Q Consensus 185 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~ 264 (550)
.-..|+++.+.++ .+|..+. ++|+.|.+.+|.++. ++. ..++|++|++++|+++.. +. ..++|+.|++.
T Consensus 202 ~~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt~-LP~---lp~~Lk~LdLs~N~LtsL-P~---lp~sL~~L~Ls 270 (788)
T PRK15387 202 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLTSL-PV---LPPGLLELSIF 270 (788)
T ss_pred CCcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCCC-CCC---CCCCCcEEEecCCccCcc-cC---cccccceeecc
Confidence 3455677776666 3444333 367777777776663 222 246777777777776632 22 23567777777
Q ss_pred CCcccCCCCCcccCCCCccEEEccCCcccCCccchhcccCCCCcEEEeecccccccCCccccCCCCCccEEEcccccCCC
Q 008876 265 RNQIEGPLPSGMFSLQNLQTLDLSFNLLNLSSIPMWMAELPSLSRVYLAGCGIKGKIPEFFRTTPSPLQELDLSVNHLSG 344 (550)
Q Consensus 265 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 344 (550)
+|.+. .++. ..++|+.|++++|.++. ++. ..++|+.|++++|.+.... . .+.+|+.|++++|.++.
T Consensus 271 ~N~L~-~Lp~---lp~~L~~L~Ls~N~Lt~--LP~---~p~~L~~LdLS~N~L~~Lp-~----lp~~L~~L~Ls~N~L~~ 336 (788)
T PRK15387 271 SNPLT-HLPA---LPSGLCKLWIFGNQLTS--LPV---LPPGLQELSVSDNQLASLP-A----LPSELCKLWAYNNQLTS 336 (788)
T ss_pred CCchh-hhhh---chhhcCEEECcCCcccc--ccc---cccccceeECCCCccccCC-C----CcccccccccccCcccc
Confidence 77665 2332 12467777777775442 222 2466777777777665421 1 23347777888777763
Q ss_pred CchhhhhccccccEEEccCCeeeccCCccccCCCCCcEEEccCCccccccccccccCCCCCCCCeEEEeccCCCCCCCCC
Q 008876 345 SIPAWIGSLTQLYSLNLSRNSLVSSIPETITNLQDLVLLDLHSNKLTGSISQVFKIGQRFPDGSLTYIDLSDNGFSSGIE 424 (550)
Q Consensus 345 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 424 (550)
. +. ...+|+.|++++|.+...+. ..++|+.|++++|++...+.. + ..|+.|++++|.+.. ++
T Consensus 337 L-P~---lp~~Lq~LdLS~N~Ls~LP~----lp~~L~~L~Ls~N~L~~LP~l--------~-~~L~~LdLs~N~Lt~-LP 398 (788)
T PRK15387 337 L-PT---LPSGLQELSVSDNQLASLPT----LPSELYKLWAYNNRLTSLPAL--------P-SGLKELIVSGNRLTS-LP 398 (788)
T ss_pred c-cc---cccccceEecCCCccCCCCC----CCcccceehhhccccccCccc--------c-cccceEEecCCcccC-CC
Confidence 2 21 12478888888888775332 235677888888877644321 1 468888888888764 33
Q ss_pred CCCCCCcccccEEeccCCcccCcCCcccccccccceeeCCCCccceeCCCcCCCCCCCcEEECcCccccccCCCcc
Q 008876 425 LTGGGGQTGIRFLNLSRNVLEGQIPVSVGRLRSLRSLDLSYNKLGYVLPGSLANESSLETLKLQNNRFTGRIPSEY 500 (550)
Q Consensus 425 ~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~ 500 (550)
. .+++|+.|++++|.+++ +|.. +.+|+.|++++|+++ .+|..+.++++|+.|++++|++.+..+..+
T Consensus 399 ~----l~s~L~~LdLS~N~Lss-IP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L 465 (788)
T PRK15387 399 V----LPSELKELMVSGNRLTS-LPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQAL 465 (788)
T ss_pred C----cccCCCEEEccCCcCCC-CCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHH
Confidence 2 24678889999998874 3432 346888999999988 567788888999999999999887655444
No 17
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.69 E-value=1.9e-18 Score=165.50 Aligned_cols=60 Identities=32% Similarity=0.405 Sum_probs=26.8
Q ss_pred ccEEEcccccCCCC----chhhhhccccccEEEccCCeeeccC----CccccCCCCCcEEEccCCccc
Q 008876 332 LQELDLSVNHLSGS----IPAWIGSLTQLYSLNLSRNSLVSSI----PETITNLQDLVLLDLHSNKLT 391 (550)
Q Consensus 332 L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~----~~~l~~~~~L~~L~l~~~~i~ 391 (550)
|+.|++++|.++.. ....+..+++|+.|++++|.+.+.. ...+..+++|++|++++|.++
T Consensus 139 L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~ 206 (319)
T cd00116 139 LEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLT 206 (319)
T ss_pred ceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccC
Confidence 55555555554421 1223334445555555555554211 112233345555555555544
No 18
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.65 E-value=7.3e-18 Score=161.46 Aligned_cols=119 Identities=24% Similarity=0.225 Sum_probs=55.7
Q ss_pred CCCCCccCCCCCcEEeCCCccCCCC----CchhhhhccCCcEEEcCCCcCCC------cccccccCCcccchhhcccccc
Q 008876 29 IIPPSIGCLQNLKKLYLYGNKLSGS----VPESISKLLKLEELHLHENRLSG------TLSSSLGNLKNINQLLMHTNQF 98 (550)
Q Consensus 29 ~~~~~l~~l~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~~~------~~~~~~~~l~~L~~L~l~~~~~ 98 (550)
..+..+..+++|++++++++.++.. ++..+...++|+.++++++.+.. ..+..+..+++|+.|++++|.+
T Consensus 14 ~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 93 (319)
T cd00116 14 RATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNAL 93 (319)
T ss_pred chHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCC
Confidence 3344445555666666666665322 23333344556666666654431 1122334455555555555555
Q ss_pred CccCchhccCCCC---CCEEEcccccCccc----cchhhcCC-CCcCeEeccCcccc
Q 008876 99 TGVIPDSFTNLTN---LVRLDLHCNYLNGY----IPEKIGEL-QLLEQLDFSNNLLR 147 (550)
Q Consensus 99 ~~~~~~~l~~l~~---L~~L~l~~~~~~~~----~~~~l~~l-~~L~~L~l~~~~~~ 147 (550)
....+..+..+.+ |++|++++|.+.+. ....+..+ ++|+.|++++|.+.
T Consensus 94 ~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~ 150 (319)
T cd00116 94 GPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLE 150 (319)
T ss_pred ChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCC
Confidence 4333333322222 55555555554421 11223334 55555555555443
No 19
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.59 E-value=7.3e-15 Score=151.22 Aligned_cols=247 Identities=26% Similarity=0.362 Sum_probs=163.1
Q ss_pred CCCcEEEecCccccCCCcccccCCCcccEEEccCCcccCCCCCcccCCCCccEEEccCCcccCCccchhcccCCCCcEEE
Q 008876 232 QDLTELYLNGNQLSGQIPKSISQLSQLIFLSISRNQIEGPLPSGMFSLQNLQTLDLSFNLLNLSSIPMWMAELPSLSRVY 311 (550)
Q Consensus 232 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~ 311 (550)
.+...|+++++.++. .+..+ .+.++.|++++|.++ .++..+. ++|+.|++++|.++ .++..+ .++|+.|+
T Consensus 178 ~~~~~L~L~~~~Lts-LP~~I--p~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt--sLP~~l--~~~L~~L~ 247 (754)
T PRK15370 178 NNKTELRLKILGLTT-IPACI--PEQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT--SIPATL--PDTIQEME 247 (754)
T ss_pred cCceEEEeCCCCcCc-CCccc--ccCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc--cCChhh--hccccEEE
Confidence 356788888887763 34333 257889999998887 4554433 58899999888654 344432 34688888
Q ss_pred eecccccccCCccccCCCCCccEEEcccccCCCCchhhhhccccccEEEccCCeeeccCCccccCCCCCcEEEccCCccc
Q 008876 312 LAGCGIKGKIPEFFRTTPSPLQELDLSVNHLSGSIPAWIGSLTQLYSLNLSRNSLVSSIPETITNLQDLVLLDLHSNKLT 391 (550)
Q Consensus 312 l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~ 391 (550)
+++|.+.. .+..+ +.+|+.|++++|++.. ++..+ +++|+.|++++|.+...+ ..+ .++|+.|++++|+++
T Consensus 248 Ls~N~L~~-LP~~l---~s~L~~L~Ls~N~L~~-LP~~l--~~sL~~L~Ls~N~Lt~LP-~~l--p~sL~~L~Ls~N~Lt 317 (754)
T PRK15370 248 LSINRITE-LPERL---PSALQSLDLFHNKISC-LPENL--PEELRYLSVYDNSIRTLP-AHL--PSGITHLNVQSNSLT 317 (754)
T ss_pred CcCCccCc-CChhH---hCCCCEEECcCCccCc-ccccc--CCCCcEEECCCCccccCc-ccc--hhhHHHHHhcCCccc
Confidence 88887763 33322 2458888888888773 33322 257888888888777433 222 246888888888877
Q ss_pred cccccccccCCCCCCCCeEEEeccCCCCCCCCCCCCCCCcccccEEeccCCcccCcCCcccccccccceeeCCCCcccee
Q 008876 392 GSISQVFKIGQRFPDGSLTYIDLSDNGFSSGIELTGGGGQTGIRFLNLSRNVLEGQIPVSVGRLRSLRSLDLSYNKLGYV 471 (550)
Q Consensus 392 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~i~~~ 471 (550)
..+.... ++|+.|++++|.+++ ++. .-+++|+.|++++|.++. +|..+ .++|+.|+|++|.++.
T Consensus 318 ~LP~~l~--------~sL~~L~Ls~N~Lt~-LP~---~l~~sL~~L~Ls~N~L~~-LP~~l--p~~L~~LdLs~N~Lt~- 381 (754)
T PRK15370 318 ALPETLP--------PGLKTLEAGENALTS-LPA---SLPPELQVLDVSKNQITV-LPETL--PPTITTLDVSRNALTN- 381 (754)
T ss_pred cCCcccc--------ccceeccccCCcccc-CCh---hhcCcccEEECCCCCCCc-CChhh--cCCcCEEECCCCcCCC-
Confidence 5433221 578888888887765 322 123678888888888773 44444 3578888888888874
Q ss_pred CCCcCCCCCCCcEEECcCccccccCCCcc----cCCCcCceeecCCcccc
Q 008876 472 LPGSLANESSLETLKLQNNRFTGRIPSEY----LKLKKLKELDLSHNLLV 517 (550)
Q Consensus 472 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~~----~~l~~L~~L~l~~n~~~ 517 (550)
+|..+. .+|+.|++++|.+. .+|..+ ..++++..+++.+|++.
T Consensus 382 LP~~l~--~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 382 LPENLP--AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred CCHhHH--HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 444443 46888888888877 445433 33577888888888875
No 20
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.56 E-value=1.6e-14 Score=148.68 Aligned_cols=248 Identities=26% Similarity=0.377 Sum_probs=179.2
Q ss_pred CCCcEEEcccCcccCcchhhccCCCCCcEEEecCccccCCCcccccCCCcccEEEccCCcccCCCCCcccCCCCccEEEc
Q 008876 208 ASLRRVSLANNKLEGAIPTSLGNLQDLTELYLNGNQLSGQIPKSISQLSQLIFLSISRNQIEGPLPSGMFSLQNLQTLDL 287 (550)
Q Consensus 208 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 287 (550)
.+...|++++..++. +|..+. ++++.|++++|.++. .+..+. ++|+.|++++|.++ .++..+. ++|+.|++
T Consensus 178 ~~~~~L~L~~~~Lts-LP~~Ip--~~L~~L~Ls~N~Lts-LP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~L 248 (754)
T PRK15370 178 NNKTELRLKILGLTT-IPACIP--EQITTLILDNNELKS-LPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMEL 248 (754)
T ss_pred cCceEEEeCCCCcCc-CCcccc--cCCcEEEecCCCCCc-CChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEEC
Confidence 356789998888773 444443 579999999999884 444332 68999999999887 4554443 57999999
Q ss_pred cCCcccCCccchhcccCCCCcEEEeecccccccCCccccCCCCCccEEEcccccCCCCchhhhhccccccEEEccCCeee
Q 008876 288 SFNLLNLSSIPMWMAELPSLSRVYLAGCGIKGKIPEFFRTTPSPLQELDLSVNHLSGSIPAWIGSLTQLYSLNLSRNSLV 367 (550)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 367 (550)
++|.+. .++..+ .++|+.|++++|.+.. .+..+ +++|+.|++++|.++.. +..+ .++|+.|++++|.+.
T Consensus 249 s~N~L~--~LP~~l--~s~L~~L~Ls~N~L~~-LP~~l---~~sL~~L~Ls~N~Lt~L-P~~l--p~sL~~L~Ls~N~Lt 317 (754)
T PRK15370 249 SINRIT--ELPERL--PSALQSLDLFHNKISC-LPENL---PEELRYLSVYDNSIRTL-PAHL--PSGITHLNVQSNSLT 317 (754)
T ss_pred cCCccC--cCChhH--hCCCCEEECcCCccCc-ccccc---CCCCcEEECCCCccccC-cccc--hhhHHHHHhcCCccc
Confidence 999765 345443 2579999999988774 33332 34699999999998743 2222 257899999999887
Q ss_pred ccCCccccCCCCCcEEEccCCccccccccccccCCCCCCCCeEEEeccCCCCCCCCCCCCCCCcccccEEeccCCcccCc
Q 008876 368 SSIPETITNLQDLVLLDLHSNKLTGSISQVFKIGQRFPDGSLTYIDLSDNGFSSGIELTGGGGQTGIRFLNLSRNVLEGQ 447 (550)
Q Consensus 368 ~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~ 447 (550)
..+ ..+ .++|+.|++++|.++..+... + ++|+.|++++|.+.. ++. .-+++|+.|++++|.++.
T Consensus 318 ~LP-~~l--~~sL~~L~Ls~N~Lt~LP~~l-------~-~sL~~L~Ls~N~L~~-LP~---~lp~~L~~LdLs~N~Lt~- 381 (754)
T PRK15370 318 ALP-ETL--PPGLKTLEAGENALTSLPASL-------P-PELQVLDVSKNQITV-LPE---TLPPTITTLDVSRNALTN- 381 (754)
T ss_pred cCC-ccc--cccceeccccCCccccCChhh-------c-CcccEEECCCCCCCc-CCh---hhcCCcCEEECCCCcCCC-
Confidence 543 222 368999999999887654321 1 689999999998864 332 224689999999999984
Q ss_pred CCcccccccccceeeCCCCccceeCCCcCC----CCCCCcEEECcCccccc
Q 008876 448 IPVSVGRLRSLRSLDLSYNKLGYVLPGSLA----NESSLETLKLQNNRFTG 494 (550)
Q Consensus 448 ~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~----~l~~L~~L~l~~~~~~~ 494 (550)
+|..+. ++|+.|++++|++. .+|..+. ..+++..|++.+|++..
T Consensus 382 LP~~l~--~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls~ 429 (754)
T PRK15370 382 LPENLP--AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFSE 429 (754)
T ss_pred CCHhHH--HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCccH
Confidence 454443 46999999999998 4455443 35788999999999873
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.46 E-value=9.3e-16 Score=121.97 Aligned_cols=157 Identities=32% Similarity=0.492 Sum_probs=110.0
Q ss_pred ccCCCCCcEEeCCCccCCCCCchhhhhccCCcEEEcCCCcCCCcccccccCCcccchhhccccccCccCchhccCCCCCC
Q 008876 34 IGCLQNLKKLYLYGNKLSGSVPESISKLLKLEELHLHENRLSGTLSSSLGNLKNINQLLMHTNQFTGVIPDSFTNLTNLV 113 (550)
Q Consensus 34 l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~ 113 (550)
+..+.+++.|.++.++++ ..|..++.+.+|++|++.+|.+. ..|..++.+++|+.|+++-+++. ..|.+|+.+|-|+
T Consensus 29 Lf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~le 105 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALE 105 (264)
T ss_pred ccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhh
Confidence 445566777778888777 56667777888888888888776 67777778888888888777765 6777788888888
Q ss_pred EEEcccccCcc-ccchhhcCCCCcCeEeccCccccCcCCcccCCCCCCCEEEccCCcccccccCCCCCCCCCCccEEEcC
Q 008876 114 RLDLHCNYLNG-YIPEKIGELQLLEQLDFSNNLLRGKLPPSLCNLTVISVLYLDNNKLEGAIPFPSSPGQMPSLGFLRLQ 192 (550)
Q Consensus 114 ~L~l~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~ 192 (550)
.|++.+|.+.+ ..|..|-.+..|+-|.++++.+. .+|..+.++.+|+.|.+++|++. ..+..++.+..|++|.+.
T Consensus 106 vldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll---~lpkeig~lt~lrelhiq 181 (264)
T KOG0617|consen 106 VLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL---SLPKEIGDLTRLRELHIQ 181 (264)
T ss_pred hhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh---hCcHHHHHHHHHHHHhcc
Confidence 88887776643 45666667777777777777776 66777777777777777776543 223444555555666666
Q ss_pred CCccc
Q 008876 193 DNNLT 197 (550)
Q Consensus 193 ~~~~~ 197 (550)
+++++
T Consensus 182 gnrl~ 186 (264)
T KOG0617|consen 182 GNRLT 186 (264)
T ss_pred cceee
Confidence 55554
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.44 E-value=5.8e-15 Score=117.49 Aligned_cols=154 Identities=32% Similarity=0.490 Sum_probs=90.0
Q ss_pred ccCcccEeeCCCCCCCCcCCCCCccCCCCCcEEeCCCccCCCCCchhhhhccCCcEEEcCCCcCCCcccccccCCcccch
Q 008876 11 LLTSLEVLDLGGLVDLTGIIPPSIGCLQNLKKLYLYGNKLSGSVPESISKLLKLEELHLHENRLSGTLSSSLGNLKNINQ 90 (550)
Q Consensus 11 ~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 90 (550)
.+.++..|.++.+ .++ .+|+.++.+.+|+.|++.+++++ ..|..++.+++|+.|++.-|++. ..|..|+.++.|+.
T Consensus 31 ~~s~ITrLtLSHN-Kl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~lev 106 (264)
T KOG0617|consen 31 NMSNITRLTLSHN-KLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEV 106 (264)
T ss_pred chhhhhhhhcccC-cee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhh
Confidence 3444455555552 222 45556666666666666666665 55666666666666666666554 55666666666666
Q ss_pred hhccccccCc-cCchhccCCCCCCEEEcccccCccccchhhcCCCCcCeEeccCccccCcCCcccCCCCCCCEEEccCCc
Q 008876 91 LLMHTNQFTG-VIPDSFTNLTNLVRLDLHCNYLNGYIPEKIGELQLLEQLDFSNNLLRGKLPPSLCNLTVISVLYLDNNK 169 (550)
Q Consensus 91 L~l~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 169 (550)
|++..+.+.+ .+|+.|-.++.|+.|.++.|.+. +.|..++++++|+.|.+.++.+- .+|..+..+.+|++|.+.+|.
T Consensus 107 ldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnr 184 (264)
T KOG0617|consen 107 LDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNR 184 (264)
T ss_pred hhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccce
Confidence 6666655432 34444555555666666666555 45555666666666666666554 455666666666666666665
Q ss_pred c
Q 008876 170 L 170 (550)
Q Consensus 170 ~ 170 (550)
+
T Consensus 185 l 185 (264)
T KOG0617|consen 185 L 185 (264)
T ss_pred e
Confidence 4
No 23
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.22 E-value=3.9e-13 Score=119.73 Aligned_cols=118 Identities=24% Similarity=0.318 Sum_probs=53.3
Q ss_pred cCCCCccEEEccCCcccCCcc---chhcccCCCCcEEEeecccccccCCccc------------cCCCCCccEEEccccc
Q 008876 277 FSLQNLQTLDLSFNLLNLSSI---PMWMAELPSLSRVYLAGCGIKGKIPEFF------------RTTPSPLQELDLSVNH 341 (550)
Q Consensus 277 ~~~~~L~~L~l~~~~~~~~~~---~~~~~~~~~L~~L~l~~~~~~~~~~~~~------------~~~~~~L~~L~l~~~~ 341 (550)
..+|.|+.++++.|.+....+ ...+.++..|++|++.+|.+.......+ ...+++|+.+....|+
T Consensus 89 ~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNr 168 (382)
T KOG1909|consen 89 LGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNR 168 (382)
T ss_pred hcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccc
Confidence 345566666666665544322 2234455566666666665442221111 1122235555555555
Q ss_pred CCCC----chhhhhccccccEEEccCCeeecc----CCccccCCCCCcEEEccCCcccccc
Q 008876 342 LSGS----IPAWIGSLTQLYSLNLSRNSLVSS----IPETITNLQDLVLLDLHSNKLTGSI 394 (550)
Q Consensus 342 ~~~~----~~~~~~~~~~L~~L~l~~~~~~~~----~~~~l~~~~~L~~L~l~~~~i~~~~ 394 (550)
+.+. +...|+..+.|+.+.++.|.+... ....+.+++.|+.|++.+|.++..+
T Consensus 169 len~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~eg 229 (382)
T KOG1909|consen 169 LENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEG 229 (382)
T ss_pred cccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHH
Confidence 4322 222344444555555555544321 1123344555555555555444333
No 24
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.17 E-value=4.1e-12 Score=116.55 Aligned_cols=217 Identities=26% Similarity=0.203 Sum_probs=120.3
Q ss_pred chhcccCCCCcEEEeecccccccCCccccCCCCCccEEEcccccCCCC--chhhhhccccccEEEccCCeeeccCCc-cc
Q 008876 298 PMWMAELPSLSRVYLAGCGIKGKIPEFFRTTPSPLQELDLSVNHLSGS--IPAWIGSLTQLYSLNLSRNSLVSSIPE-TI 374 (550)
Q Consensus 298 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~-~l 374 (550)
...-+.+.+|+.+.++++.+.....+.....+++++.|+++.|-+... +......+|+|+.|+++.|.+...... .-
T Consensus 114 ~akQsn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~ 193 (505)
T KOG3207|consen 114 AAKQSNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTT 193 (505)
T ss_pred HHHhhhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccch
Confidence 333445677888888888776555433344445588888888766522 334556678888888888876543221 12
Q ss_pred cCCCCCcEEEccCCccccccccccccCCCCCCCCeEEEeccCCCCCCCCCCCCCCCcccccEEeccCCcccCcC-Ccccc
Q 008876 375 TNLQDLVLLDLHSNKLTGSISQVFKIGQRFPDGSLTYIDLSDNGFSSGIELTGGGGQTGIRFLNLSRNVLEGQI-PVSVG 453 (550)
Q Consensus 375 ~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~-~~~l~ 453 (550)
..++.++.|.++.|.++-..-... .. ..|+|+.|.+..|.. ..........+..|++|+|++|.+.+.. .....
T Consensus 194 ~~l~~lK~L~l~~CGls~k~V~~~--~~--~fPsl~~L~L~~N~~-~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~ 268 (505)
T KOG3207|consen 194 LLLSHLKQLVLNSCGLSWKDVQWI--LL--TFPSLEVLYLEANEI-ILIKATSTKILQTLQELDLSNNNLIDFDQGYKVG 268 (505)
T ss_pred hhhhhhheEEeccCCCCHHHHHHH--HH--hCCcHHHhhhhcccc-cceecchhhhhhHHhhccccCCcccccccccccc
Confidence 246667777777776652211111 11 115667777766641 1122223344556666677666654221 12345
Q ss_pred cccccceeeCCCCcccee-CCCc-----CCCCCCCcEEECcCcccccc-CCCcccCCCcCceeecCCcccccc
Q 008876 454 RLRSLRSLDLSYNKLGYV-LPGS-----LANESSLETLKLQNNRFTGR-IPSEYLKLKKLKELDLSHNLLVGE 519 (550)
Q Consensus 454 ~l~~L~~L~l~~n~i~~~-~~~~-----l~~l~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~n~~~~~ 519 (550)
.++.|+.|+++.|.+..+ .|++ ...+++|+.|++..|++.+- .-..+..+++|+.|.+..|++..+
T Consensus 269 ~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~e 341 (505)
T KOG3207|consen 269 TLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNKE 341 (505)
T ss_pred cccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccccc
Confidence 566666666666666542 1222 12356666666666666421 111244456666666666666543
No 25
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.16 E-value=6.2e-12 Score=115.36 Aligned_cols=211 Identities=24% Similarity=0.205 Sum_probs=91.6
Q ss_pred CCCCCcEEEecCccccCCCc-ccccCCCcccEEEccCCcccCC--CCCcccCCCCccEEEccCCcccCCccchhcccCCC
Q 008876 230 NLQDLTELYLNGNQLSGQIP-KSISQLSQLIFLSISRNQIEGP--LPSGMFSLQNLQTLDLSFNLLNLSSIPMWMAELPS 306 (550)
Q Consensus 230 ~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 306 (550)
++.+|+++.++++.+..... .....|+.++.|+++.|-+... +..-...+|+|+.|+++.|.
T Consensus 119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nr--------------- 183 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNR--------------- 183 (505)
T ss_pred hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhccccccc---------------
Confidence 44566666666665542221 2344556666666666544321 11112235555555555554
Q ss_pred CcEEEeecccccccCCccccCCCCCccEEEcccccCC-CCchhhhhccccccEEEccCCeeeccCCccccCCCCCcEEEc
Q 008876 307 LSRVYLAGCGIKGKIPEFFRTTPSPLQELDLSVNHLS-GSIPAWIGSLTQLYSLNLSRNSLVSSIPETITNLQDLVLLDL 385 (550)
Q Consensus 307 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l 385 (550)
+............+.++.|.+++|.++ ..+......+|+++.|++..|............+..|++|+|
T Consensus 184 ----------l~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdL 253 (505)
T KOG3207|consen 184 ----------LSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDL 253 (505)
T ss_pred ----------ccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccc
Confidence 332222222222233555555555544 112223344555555555555322122222333445555555
Q ss_pred cCCccccccccccccCCCCCCCCeEEEeccCCCCCCCCCCCC-----CCCcccccEEeccCCcccCc-CCcccccccccc
Q 008876 386 HSNKLTGSISQVFKIGQRFPDGSLTYIDLSDNGFSSGIELTG-----GGGQTGIRFLNLSRNVLEGQ-IPVSVGRLRSLR 459 (550)
Q Consensus 386 ~~~~i~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-----~~~~~~L~~L~l~~~~i~~~-~~~~l~~l~~L~ 459 (550)
++|++-........ ..+ +.|+.|+++.+++.+.-.... ...+++|+.|++..|+|..- ....+..+++|+
T Consensus 254 s~N~li~~~~~~~~--~~l--~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk 329 (505)
T KOG3207|consen 254 SNNNLIDFDQGYKV--GTL--PGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLK 329 (505)
T ss_pred cCCccccccccccc--ccc--cchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhh
Confidence 55554332211110 000 344444444444432111111 23455566666666665311 122344455556
Q ss_pred eeeCCCCccc
Q 008876 460 SLDLSYNKLG 469 (550)
Q Consensus 460 ~L~l~~n~i~ 469 (550)
+|.+-.|++.
T Consensus 330 ~l~~~~n~ln 339 (505)
T KOG3207|consen 330 HLRITLNYLN 339 (505)
T ss_pred hhhccccccc
Confidence 6665565554
No 26
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.15 E-value=5e-12 Score=112.76 Aligned_cols=236 Identities=21% Similarity=0.210 Sum_probs=118.8
Q ss_pred CCCCccEEEcCCCcccc----cCCCCccCCCCCcEEEcccCcc---cCc-------chhhccCCCCCcEEEecCccccCC
Q 008876 182 QMPSLGFLRLQDNNLTG----KIPPTFGYLASLRRVSLANNKL---EGA-------IPTSLGNLQDLTELYLNGNQLSGQ 247 (550)
Q Consensus 182 ~~~~L~~L~l~~~~~~~----~~~~~l~~~~~L~~L~l~~~~~---~~~-------~~~~l~~~~~L~~L~l~~~~~~~~ 247 (550)
.+..++.+++++|.+.. .....+...+.|+..++++... ... ....+..+|+|++|+|++|-+...
T Consensus 28 ~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~ 107 (382)
T KOG1909|consen 28 PMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPK 107 (382)
T ss_pred ccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCcc
Confidence 34455555555554431 1223334445555555554211 111 112344566777777777765433
Q ss_pred Cc----ccccCCCcccEEEccCCcccCC-------------CCCcccCCCCccEEEccCCcccCC---ccchhcccCCCC
Q 008876 248 IP----KSISQLSQLIFLSISRNQIEGP-------------LPSGMFSLQNLQTLDLSFNLLNLS---SIPMWMAELPSL 307 (550)
Q Consensus 248 ~~----~~l~~~~~L~~L~l~~~~~~~~-------------~~~~~~~~~~L~~L~l~~~~~~~~---~~~~~~~~~~~L 307 (550)
.. +.+.++..|+.|.+.+|.+... ......+-+.|+.+...+|.+... .+...++..+.|
T Consensus 108 g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~l 187 (382)
T KOG1909|consen 108 GIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTL 187 (382)
T ss_pred chHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhcccc
Confidence 22 2345566777777777765421 111222346777777777654332 233455666777
Q ss_pred cEEEeecccccccCC----ccccCCCCCccEEEcccccCCCC----chhhhhccccccEEEccCCeeeccCCccc-----
Q 008876 308 SRVYLAGCGIKGKIP----EFFRTTPSPLQELDLSVNHLSGS----IPAWIGSLTQLYSLNLSRNSLVSSIPETI----- 374 (550)
Q Consensus 308 ~~L~l~~~~~~~~~~----~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~~~l----- 374 (550)
+.+.+..+.+..... ..+..++ +|+.|++..|.++.. +...++.+++|+.+++++|.+....+.++
T Consensus 188 eevr~~qN~I~~eG~~al~eal~~~~-~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~ 266 (382)
T KOG1909|consen 188 EEVRLSQNGIRPEGVTALAEALEHCP-HLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALK 266 (382)
T ss_pred ceEEEecccccCchhHHHHHHHHhCC-cceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHh
Confidence 777777766543222 1122222 266666666655533 22344556666666666666655443322
Q ss_pred cCCCCCcEEEccCCccccccccccccCCCCCCCCeEEEeccCCCC
Q 008876 375 TNLQDLVLLDLHSNKLTGSISQVFKIGQRFPDGSLTYIDLSDNGF 419 (550)
Q Consensus 375 ~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 419 (550)
...|+|+.+.+.+|.|+......+...... .+.|+.|++++|.+
T Consensus 267 ~~~p~L~vl~l~gNeIt~da~~~la~~~~e-k~dL~kLnLngN~l 310 (382)
T KOG1909|consen 267 ESAPSLEVLELAGNEITRDAALALAACMAE-KPDLEKLNLNGNRL 310 (382)
T ss_pred ccCCCCceeccCcchhHHHHHHHHHHHHhc-chhhHHhcCCcccc
Confidence 235666666666666654444333322221 24555555555554
No 27
>PLN03150 hypothetical protein; Provisional
Probab=99.14 E-value=5.5e-11 Score=122.36 Aligned_cols=117 Identities=40% Similarity=0.588 Sum_probs=105.8
Q ss_pred cccEEeccCCcccCcCCcccccccccceeeCCCCccceeCCCcCCCCCCCcEEECcCccccccCCCcccCCCcCceeecC
Q 008876 433 GIRFLNLSRNVLEGQIPVSVGRLRSLRSLDLSYNKLGYVLPGSLANESSLETLKLQNNRFTGRIPSEYLKLKKLKELDLS 512 (550)
Q Consensus 433 ~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 512 (550)
.++.|++.+|.+.+..+..+..+++|+.|+|++|.+.+.+|..+..+++|+.|++++|.+.+.+|..+.++++|+.|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 47889999999999999999999999999999999998899999999999999999999999999999999999999999
Q ss_pred CccccccCCCCCC--CCCccccCCCCCCCCCCCC-CCCCC
Q 008876 513 HNLLVGEIPAGKP--LSDFPESSFSGNRGLCGKP-LTACR 549 (550)
Q Consensus 513 ~n~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~-~~~~~ 549 (550)
+|.+.+.+|.... ...+..+++.+|+++|+++ +..|.
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l~~C~ 538 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACG 538 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCccccCCCCCCCCc
Confidence 9999999997643 2345678999999999985 57773
No 28
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.07 E-value=8.1e-12 Score=118.37 Aligned_cols=190 Identities=31% Similarity=0.392 Sum_probs=155.3
Q ss_pred ccEEEcccccCCCCchhhhhccccccEEEccCCeeeccCCccccCCCCCcEEEccCCccccccccccccCCCCCCCCeEE
Q 008876 332 LQELDLSVNHLSGSIPAWIGSLTQLYSLNLSRNSLVSSIPETITNLQDLVLLDLHSNKLTGSISQVFKIGQRFPDGSLTY 411 (550)
Q Consensus 332 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~L~~ 411 (550)
-...+++.|++. .++..+..|..|+.+.++.|.+. ..+..+.++..|.+++++.|++...+..... --|+.
T Consensus 77 t~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~-------lpLkv 147 (722)
T KOG0532|consen 77 TVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLSHLPDGLCD-------LPLKV 147 (722)
T ss_pred hhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhhcCChhhhc-------Cccee
Confidence 456678888887 56677788888999989888876 5677788899999999999999866655443 46899
Q ss_pred EeccCCCCCCCCCCCCCCCcccccEEeccCCcccCcCCcccccccccceeeCCCCccceeCCCcCCCCCCCcEEECcCcc
Q 008876 412 IDLSDNGFSSGIELTGGGGQTGIRFLNLSRNVLEGQIPVSVGRLRSLRSLDLSYNKLGYVLPGSLANESSLETLKLQNNR 491 (550)
Q Consensus 412 L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~ 491 (550)
|.+++|+++..-. .+....+|..|+.+.|.+. ..+..+.++.+|+.|.++.|.+.+. |+.+..+ .|.+||+++|+
T Consensus 148 li~sNNkl~~lp~--~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~~l-p~El~~L-pLi~lDfScNk 222 (722)
T KOG0532|consen 148 LIVSNNKLTSLPE--EIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLEDL-PEELCSL-PLIRLDFSCNK 222 (722)
T ss_pred EEEecCccccCCc--ccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhhhC-CHHHhCC-ceeeeecccCc
Confidence 9999999876333 3448899999999999998 5677899999999999999999854 5555544 79999999999
Q ss_pred ccccCCCcccCCCcCceeecCCccccccCCC----CCCCCCccccCCCCC
Q 008876 492 FTGRIPSEYLKLKKLKELDLSHNLLVGEIPA----GKPLSDFPESSFSGN 537 (550)
Q Consensus 492 ~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~----~~~~~~~~~l~~~~~ 537 (550)
+. .+|..|.+|.+|++|-|.+|++.. .|. .+..+.|++|.+..|
T Consensus 223 is-~iPv~fr~m~~Lq~l~LenNPLqS-PPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 223 IS-YLPVDFRKMRHLQVLQLENNPLQS-PPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred ee-ecchhhhhhhhheeeeeccCCCCC-ChHHHHhccceeeeeeecchhc
Confidence 99 789999999999999999999974 442 245788999988776
No 29
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.05 E-value=1.1e-10 Score=122.74 Aligned_cols=200 Identities=24% Similarity=0.234 Sum_probs=114.4
Q ss_pred CcccEeeCCCCCCCCcCCCCCccCCCCCcEEeCCCcc--CCCCCchhhhhccCCcEEEcCCCcCCCcccccccCCcccch
Q 008876 13 TSLEVLDLGGLVDLTGIIPPSIGCLQNLKKLYLYGNK--LSGSVPESISKLLKLEELHLHENRLSGTLSSSLGNLKNINQ 90 (550)
Q Consensus 13 ~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~--~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 90 (550)
...|..++.++. ...++.. ..+++|+.|-+.++. +.......|..+|.|++||+++|.-....|..++.+-+||+
T Consensus 523 ~~~rr~s~~~~~--~~~~~~~-~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~Lry 599 (889)
T KOG4658|consen 523 NSVRRMSLMNNK--IEHIAGS-SENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRY 599 (889)
T ss_pred hheeEEEEeccc--hhhccCC-CCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhc
Confidence 445666665521 2122222 244578888777775 44344555677888888888877654577888888888888
Q ss_pred hhccccccCccCchhccCCCCCCEEEcccccCccccchhhcCCCCcCeEeccCcccc--CcCCcccCCCCCCCEEEccCC
Q 008876 91 LLMHTNQFTGVIPDSFTNLTNLVRLDLHCNYLNGYIPEKIGELQLLEQLDFSNNLLR--GKLPPSLCNLTVISVLYLDNN 168 (550)
Q Consensus 91 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~--~~~~~~l~~~~~L~~L~l~~~ 168 (550)
|+++++.+. .+|..++++.+|.+|++..+......+.....+++|++|.+...... ......+.++.+|+.+.....
T Consensus 600 L~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~ 678 (889)
T KOG4658|consen 600 LDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITIS 678 (889)
T ss_pred ccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecc
Confidence 888888877 67778888888888888776544344556666888888888655311 122233344455555444332
Q ss_pred cccccccCCCCCCCCCCcc----EEEcCCCcccccCCCCccCCCCCcEEEcccCccc
Q 008876 169 KLEGAIPFPSSPGQMPSLG----FLRLQDNNLTGKIPPTFGYLASLRRVSLANNKLE 221 (550)
Q Consensus 169 ~~~~~~~~~~~~~~~~~L~----~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 221 (550)
... ....+..++.|. .+.+.++... .....+..+.+|+.|.+.++...
T Consensus 679 s~~----~~e~l~~~~~L~~~~~~l~~~~~~~~-~~~~~~~~l~~L~~L~i~~~~~~ 730 (889)
T KOG4658|consen 679 SVL----LLEDLLGMTRLRSLLQSLSIEGCSKR-TLISSLGSLGNLEELSILDCGIS 730 (889)
T ss_pred hhH----hHhhhhhhHHHHHHhHhhhhcccccc-eeecccccccCcceEEEEcCCCc
Confidence 220 001112222222 2222222211 33344556666777777666654
No 30
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.02 E-value=2.8e-10 Score=95.32 Aligned_cols=100 Identities=29% Similarity=0.337 Sum_probs=43.8
Q ss_pred CeEEEeccCCCCCCCCCCCCCCCcccccEEeccCCcccCcCCccc-ccccccceeeCCCCccceeCC-CcCCCCCCCcEE
Q 008876 408 SLTYIDLSDNGFSSGIELTGGGGQTGIRFLNLSRNVLEGQIPVSV-GRLRSLRSLDLSYNKLGYVLP-GSLANESSLETL 485 (550)
Q Consensus 408 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l-~~l~~L~~L~l~~n~i~~~~~-~~l~~l~~L~~L 485 (550)
.|+.|++++|.+... ..+..++.|++|++++|.|++. ...+ ..+++|++|++++|+|.+... ..+..+++|++|
T Consensus 43 ~L~~L~Ls~N~I~~l---~~l~~L~~L~~L~L~~N~I~~i-~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L 118 (175)
T PF14580_consen 43 KLEVLDLSNNQITKL---EGLPGLPRLKTLDLSNNRISSI-SEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVL 118 (175)
T ss_dssp T--EEE-TTS--S-----TT----TT--EEE--SS---S--CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EE
T ss_pred CCCEEECCCCCCccc---cCccChhhhhhcccCCCCCCcc-ccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCccee
Confidence 444555555554431 2455678888888888888854 3334 468899999999998875322 446678899999
Q ss_pred ECcCccccccCCCc----ccCCCcCceeecC
Q 008876 486 KLQNNRFTGRIPSE----YLKLKKLKELDLS 512 (550)
Q Consensus 486 ~l~~~~~~~~~~~~----~~~l~~L~~L~l~ 512 (550)
++.+|++... +.+ +..+|+|+.||-.
T Consensus 119 ~L~~NPv~~~-~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 119 SLEGNPVCEK-KNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp E-TT-GGGGS-TTHHHHHHHH-TT-SEETTE
T ss_pred eccCCcccch-hhHHHHHHHHcChhheeCCE
Confidence 9999998843 332 4458999987643
No 31
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.00 E-value=1.2e-10 Score=101.68 Aligned_cols=130 Identities=26% Similarity=0.276 Sum_probs=65.8
Q ss_pred cccccEEEccCCeeeccCCccccCCCCCcEEEccCCccccccccccccCCCCCCCCeEEEeccCCCCCCCCCCCCCCCcc
Q 008876 353 LTQLYSLNLSRNSLVSSIPETITNLQDLVLLDLHSNKLTGSISQVFKIGQRFPDGSLTYIDLSDNGFSSGIELTGGGGQT 432 (550)
Q Consensus 353 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 432 (550)
++.|+.+++++|.++ .+.+...-.|.++.|++++|.+...+. +..++
T Consensus 283 Wq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v~n--------------------------------La~L~ 329 (490)
T KOG1259|consen 283 WQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTVQN--------------------------------LAELP 329 (490)
T ss_pred Hhhhhhccccccchh-hhhhhhhhccceeEEeccccceeeehh--------------------------------hhhcc
Confidence 445556666666554 333444445556666666655543332 12334
Q ss_pred cccEEeccCCcccCcCCcccccccccceeeCCCCccceeCCCcCCCCCCCcEEECcCccccccCC-CcccCCCcCceeec
Q 008876 433 GIRFLNLSRNVLEGQIPVSVGRLRSLRSLDLSYNKLGYVLPGSLANESSLETLKLQNNRFTGRIP-SEYLKLKKLKELDL 511 (550)
Q Consensus 433 ~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l 511 (550)
+|..||+++|.++. ...+=.++-++++|.+++|.|... ..+..+-+|..|++++|.+..... ..++++|-|+.+.+
T Consensus 330 ~L~~LDLS~N~Ls~-~~Gwh~KLGNIKtL~La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L 406 (490)
T KOG1259|consen 330 QLQLLDLSGNLLAE-CVGWHLKLGNIKTLKLAQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRL 406 (490)
T ss_pred cceEeecccchhHh-hhhhHhhhcCEeeeehhhhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhh
Confidence 44444444444431 122223344556666666665533 344455566666666666543221 23555666666666
Q ss_pred CCccccc
Q 008876 512 SHNLLVG 518 (550)
Q Consensus 512 ~~n~~~~ 518 (550)
.+||+..
T Consensus 407 ~~NPl~~ 413 (490)
T KOG1259|consen 407 TGNPLAG 413 (490)
T ss_pred cCCCccc
Confidence 6666653
No 32
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.00 E-value=2.1e-10 Score=120.52 Aligned_cols=128 Identities=24% Similarity=0.299 Sum_probs=64.9
Q ss_pred CCCcEEeCCCccCCCCCchhhhhccCCcEEEcCCCc--CCCcccccccCCcccchhhccccccCccCchhccCCCCCCEE
Q 008876 38 QNLKKLYLYGNKLSGSVPESISKLLKLEELHLHENR--LSGTLSSSLGNLKNINQLLMHTNQFTGVIPDSFTNLTNLVRL 115 (550)
Q Consensus 38 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~--~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L 115 (550)
...|...+.++.+. .++... .++.|++|-+..+. +.......|..++.|++|++++|.-...+|..++.+-+||+|
T Consensus 523 ~~~rr~s~~~~~~~-~~~~~~-~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL 600 (889)
T KOG4658|consen 523 NSVRRMSLMNNKIE-HIAGSS-ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYL 600 (889)
T ss_pred hheeEEEEeccchh-hccCCC-CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcc
Confidence 34455555444433 222211 23456666555553 222223335556666666666555444556666666666666
Q ss_pred EcccccCccccchhhcCCCCcCeEeccCccccCcCCcccCCCCCCCEEEccCC
Q 008876 116 DLHCNYLNGYIPEKIGELQLLEQLDFSNNLLRGKLPPSLCNLTVISVLYLDNN 168 (550)
Q Consensus 116 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 168 (550)
+++...+. ..|..+..++.|.+|++..+......+.....+.+|++|.+...
T Consensus 601 ~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s 652 (889)
T KOG4658|consen 601 DLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRS 652 (889)
T ss_pred cccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeecc
Confidence 66665555 45555666666666666555433233344444556666555443
No 33
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.95 E-value=8.7e-10 Score=75.77 Aligned_cols=61 Identities=48% Similarity=0.607 Sum_probs=43.6
Q ss_pred cccceeeCCCCccceeCCCcCCCCCCCcEEECcCccccccCCCcccCCCcCceeecCCccc
Q 008876 456 RSLRSLDLSYNKLGYVLPGSLANESSLETLKLQNNRFTGRIPSEYLKLKKLKELDLSHNLL 516 (550)
Q Consensus 456 ~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~ 516 (550)
|+|++|++++|+++.+.+++|.++++|++|++++|.+....+..|.++++|++|++++|++
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 4567777777777766666777777777777777777766666677777777777777754
No 34
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.92 E-value=9.2e-10 Score=92.28 Aligned_cols=59 Identities=32% Similarity=0.427 Sum_probs=11.3
Q ss_pred ccEEEcccccCCCCchhhhhccccccEEEccCCeeeccCCccccCCCCCcEEEccCCccccc
Q 008876 332 LQELDLSVNHLSGSIPAWIGSLTQLYSLNLSRNSLVSSIPETITNLQDLVLLDLHSNKLTGS 393 (550)
Q Consensus 332 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~ 393 (550)
+++|++.++.|..+ ...-..+.+|+.|++++|.+.+. +.+..++.|++|++++|+|+..
T Consensus 21 ~~~L~L~~n~I~~I-e~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~i 79 (175)
T PF14580_consen 21 LRELNLRGNQISTI-ENLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISSI 79 (175)
T ss_dssp ----------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S-
T ss_pred cccccccccccccc-cchhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCcc
Confidence 45555555555432 11111345556666666665543 2344555666666666655544
No 35
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.88 E-value=6.5e-10 Score=97.29 Aligned_cols=199 Identities=25% Similarity=0.261 Sum_probs=107.5
Q ss_pred ccCCCcccEEEccCCcccCCCCCcccCCCCccEEEccCCcccCCccchhcccCCCCcEEEeecc--c-ccccCCccccCC
Q 008876 252 ISQLSQLIFLSISRNQIEGPLPSGMFSLQNLQTLDLSFNLLNLSSIPMWMAELPSLSRVYLAGC--G-IKGKIPEFFRTT 328 (550)
Q Consensus 252 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~--~-~~~~~~~~~~~~ 328 (550)
+.-+++|+.+.++.+.... +..-...-|.|+.+.+.+..+.+.... .|.-...+..+. . ..+.... ....
T Consensus 210 l~~f~~l~~~~~s~~~~~~-i~~~~~~kptl~t~~v~~s~~~~~~~l-----~pe~~~~D~~~~E~~t~~G~~~~-~~dT 282 (490)
T KOG1259|consen 210 LNAFRNLKTLKFSALSTEN-IVDIELLKPTLQTICVHNTTIQDVPSL-----LPETILADPSGSEPSTSNGSALV-SADT 282 (490)
T ss_pred hHHhhhhheeeeeccchhh-eeceeecCchhheeeeecccccccccc-----cchhhhcCccCCCCCccCCceEE-ecch
Confidence 4445677778887776442 222233457788888876543332111 111011111110 0 0000000 1111
Q ss_pred CCCccEEEcccccCCCCchhhhhccccccEEEccCCeeeccCCccccCCCCCcEEEccCCccccccccccccCCCCCCCC
Q 008876 329 PSPLQELDLSVNHLSGSIPAWIGSLTQLYSLNLSRNSLVSSIPETITNLQDLVLLDLHSNKLTGSISQVFKIGQRFPDGS 408 (550)
Q Consensus 329 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~ 408 (550)
..-|+++|+++|.|+ .+.....-.|.++.|+++.|.+... ..+..+++|.+|++++|.++....+.... .+
T Consensus 283 Wq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KL------GN 353 (490)
T KOG1259|consen 283 WQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLAECVGWHLKL------GN 353 (490)
T ss_pred Hhhhhhccccccchh-hhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhHhhhhhHhhh------cC
Confidence 223899999999998 4445667789999999999999754 33788999999999999887554433322 35
Q ss_pred eEEEeccCCCCCCCCCCCCCCCcccccEEeccCCcccCc-CCcccccccccceeeCCCCccc
Q 008876 409 LTYIDLSDNGFSSGIELTGGGGQTGIRFLNLSRNVLEGQ-IPVSVGRLRSLRSLDLSYNKLG 469 (550)
Q Consensus 409 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~-~~~~l~~l~~L~~L~l~~n~i~ 469 (550)
++.|.+++|.+.+. ..+..+-+|..||+++|+|... -...+.++|.|+.+.+.+|++.
T Consensus 354 IKtL~La~N~iE~L---SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~ 412 (490)
T KOG1259|consen 354 IKTLKLAQNKIETL---SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLA 412 (490)
T ss_pred EeeeehhhhhHhhh---hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcc
Confidence 66666666555321 1233344444455555544321 1233444444455545444443
No 36
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.87 E-value=2.6e-09 Score=73.42 Aligned_cols=61 Identities=36% Similarity=0.477 Sum_probs=54.9
Q ss_pred ccccEEeccCCcccCcCCcccccccccceeeCCCCccceeCCCcCCCCCCCcEEECcCccc
Q 008876 432 TGIRFLNLSRNVLEGQIPVSVGRLRSLRSLDLSYNKLGYVLPGSLANESSLETLKLQNNRF 492 (550)
Q Consensus 432 ~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~~ 492 (550)
++|++|++.+|.++...+..|.++++|++|++++|+++.+.+++|.++++|++|++++|++
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 4688899999999877788999999999999999999999889999999999999999875
No 37
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.76 E-value=2.5e-10 Score=104.46 Aligned_cols=277 Identities=19% Similarity=0.158 Sum_probs=121.8
Q ss_pred ccEeeCCCCCCCCcCCCCCc-cCCCCCcEEeCCCcc-CCCCCchhhh-hccCCcEEEcCCCc-CCCcccc-cccCCcccc
Q 008876 15 LEVLDLGGLVDLTGIIPPSI-GCLQNLKKLYLYGNK-LSGSVPESIS-KLLKLEELHLHENR-LSGTLSS-SLGNLKNIN 89 (550)
Q Consensus 15 L~~L~l~~~~~~~~~~~~~l-~~l~~L~~L~l~~~~-~~~~~~~~~~-~l~~L~~L~l~~~~-~~~~~~~-~~~~l~~L~ 89 (550)
||.|++.||....+.-.+.+ ..+|++++|.+.++. +++..-..++ .+++|+.|++..|. +++.... ....|++|+
T Consensus 140 lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~ 219 (483)
T KOG4341|consen 140 LKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLK 219 (483)
T ss_pred cccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHH
Confidence 55666666555544433333 356666666666654 3333333332 35666666666643 2211111 223566666
Q ss_pred hhhccccc-cCccCch-hccCCCCCCEEEcccccCccccchhh----cCCCCcCeEeccCcc-ccCcCC-cccCCCCCCC
Q 008876 90 QLLMHTNQ-FTGVIPD-SFTNLTNLVRLDLHCNYLNGYIPEKI----GELQLLEQLDFSNNL-LRGKLP-PSLCNLTVIS 161 (550)
Q Consensus 90 ~L~l~~~~-~~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~l----~~l~~L~~L~l~~~~-~~~~~~-~~l~~~~~L~ 161 (550)
++++++|. +.+.... ..+++..++.+...+|.- ....++ ..+..+..+++..|. +++... ..-..+.+|+
T Consensus 220 ~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e--~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq 297 (483)
T KOG4341|consen 220 YLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLE--LELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQ 297 (483)
T ss_pred HhhhccCchhhcCcchHHhccchhhhhhhhccccc--ccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhh
Confidence 66666653 2221111 134444455554444321 111111 123344444443431 221111 1112344555
Q ss_pred EEEccCCcccccccCCCCCCCCCCccEEEcCCCcccccCCCCccCCCCCcEEEcccCcccCcchhhc-cCCCCCcEEEec
Q 008876 162 VLYLDNNKLEGAIPFPSSPGQMPSLGFLRLQDNNLTGKIPPTFGYLASLRRVSLANNKLEGAIPTSL-GNLQDLTELYLN 240 (550)
Q Consensus 162 ~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l-~~~~~L~~L~l~ 240 (550)
.+..+++...+..........+++|+.+.+.+++- +++.....+ .+.+.|+.+++.
T Consensus 298 ~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~-----------------------fsd~~ft~l~rn~~~Le~l~~e 354 (483)
T KOG4341|consen 298 VLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQ-----------------------FSDRGFTMLGRNCPHLERLDLE 354 (483)
T ss_pred hhcccCCCCCchHHHHHHhcCCCceEEEeccccch-----------------------hhhhhhhhhhcCChhhhhhccc
Confidence 55555554433333333334455555555555531 111111111 234455555555
Q ss_pred Ccccc-CC-CcccccCCCcccEEEccCCcc-cCC----CCCcccCCCCccEEEccCCcccCCccchhcccCCCCcEEEee
Q 008876 241 GNQLS-GQ-IPKSISQLSQLIFLSISRNQI-EGP----LPSGMFSLQNLQTLDLSFNLLNLSSIPMWMAELPSLSRVYLA 313 (550)
Q Consensus 241 ~~~~~-~~-~~~~l~~~~~L~~L~l~~~~~-~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~ 313 (550)
.+... +. +...-.+|+.|+.+.++.|.. ++. ......+...|+.+.+++++...+.....+..+++|+.+++.
T Consensus 355 ~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~ 434 (483)
T KOG4341|consen 355 ECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELI 434 (483)
T ss_pred ccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeee
Confidence 44321 11 112223455555555554432 111 011112345566666666665555556666666777777766
Q ss_pred ccc
Q 008876 314 GCG 316 (550)
Q Consensus 314 ~~~ 316 (550)
+|.
T Consensus 435 ~~q 437 (483)
T KOG4341|consen 435 DCQ 437 (483)
T ss_pred chh
Confidence 664
No 38
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.75 E-value=1.1e-08 Score=100.76 Aligned_cols=184 Identities=38% Similarity=0.559 Sum_probs=142.9
Q ss_pred CccCCCCCcEEeCCCccCCCCCchhhhhcc-CCcEEEcCCCcCCCcccccccCCcccchhhccccccCccCchhccCCCC
Q 008876 33 SIGCLQNLKKLYLYGNKLSGSVPESISKLL-KLEELHLHENRLSGTLSSSLGNLKNINQLLMHTNQFTGVIPDSFTNLTN 111 (550)
Q Consensus 33 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~ 111 (550)
.+..++.++.+++.++.++ .++....... +|+.|+++++.+. ..+..+..+++|+.|++++|++.+ .+......++
T Consensus 111 ~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~~-l~~~~~~~~~ 187 (394)
T COG4886 111 ELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLSD-LPKLLSNLSN 187 (394)
T ss_pred hhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCchhhh-hhhhhhhhhh
Confidence 3556688999999999988 5555566664 8999999999887 555678899999999999999884 4444447889
Q ss_pred CCEEEcccccCccccchhhcCCCCcCeEeccCccccCcCCcccCCCCCCCEEEccCCcccccccCCCCCCCCCCccEEEc
Q 008876 112 LVRLDLHCNYLNGYIPEKIGELQLLEQLDFSNNLLRGKLPPSLCNLTVISVLYLDNNKLEGAIPFPSSPGQMPSLGFLRL 191 (550)
Q Consensus 112 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l 191 (550)
|+.|+++++.+.. .+........|+++.++++... ..+..+.++.++..+.+..+..... ...++.+++++.|++
T Consensus 188 L~~L~ls~N~i~~-l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~~~---~~~~~~l~~l~~L~~ 262 (394)
T COG4886 188 LNNLDLSGNKISD-LPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLEDL---PESIGNLSNLETLDL 262 (394)
T ss_pred hhheeccCCcccc-CchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceeeec---cchhccccccceecc
Confidence 9999999999884 4555566777999999998544 4566677888888888777766542 356788888999999
Q ss_pred CCCcccccCCCCccCCCCCcEEEcccCcccCcchh
Q 008876 192 QDNNLTGKIPPTFGYLASLRRVSLANNKLEGAIPT 226 (550)
Q Consensus 192 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~ 226 (550)
+++.+..... ++...+++.++++++.+....+.
T Consensus 263 s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~~~~ 295 (394)
T COG4886 263 SNNQISSISS--LGSLTNLRELDLSGNSLSNALPL 295 (394)
T ss_pred cccccccccc--ccccCccCEEeccCccccccchh
Confidence 9998885443 78889999999999888755443
No 39
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.72 E-value=2.3e-08 Score=98.59 Aligned_cols=195 Identities=34% Similarity=0.461 Sum_probs=107.0
Q ss_pred EEEcCCCcCCCcccccccCCcccchhhccccccCccCchhccCCC-CCCEEEcccccCccccchhhcCCCCcCeEeccCc
Q 008876 66 ELHLHENRLSGTLSSSLGNLKNINQLLMHTNQFTGVIPDSFTNLT-NLVRLDLHCNYLNGYIPEKIGELQLLEQLDFSNN 144 (550)
Q Consensus 66 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~-~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 144 (550)
.++...+.+. .....+...+.++.|++..+.+.. .+....... +|+.|+++.+.+.. .+..+..+++|+.|++++|
T Consensus 97 ~l~~~~~~~~-~~~~~~~~~~~l~~L~l~~n~i~~-i~~~~~~~~~nL~~L~l~~N~i~~-l~~~~~~l~~L~~L~l~~N 173 (394)
T COG4886 97 SLDLNLNRLR-SNISELLELTNLTSLDLDNNNITD-IPPLIGLLKSNLKELDLSDNKIES-LPSPLRNLPNLKNLDLSFN 173 (394)
T ss_pred eeeccccccc-cCchhhhcccceeEEecCCccccc-Cccccccchhhcccccccccchhh-hhhhhhccccccccccCCc
Confidence 3455544432 223333344555666665555552 233333332 56666666665552 2344556666666666666
Q ss_pred cccCcCCcccCCCCCCCEEEccCCcccccccCCCCCCCCCCccEEEcCCCcccccCCCCccCCCCCcEEEcccCcccCcc
Q 008876 145 LLRGKLPPSLCNLTVISVLYLDNNKLEGAIPFPSSPGQMPSLGFLRLQDNNLTGKIPPTFGYLASLRRVSLANNKLEGAI 224 (550)
Q Consensus 145 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 224 (550)
++. ..+......+.|+.|+++++.+.... .......+|+++.++++... ..+..+..+.++..+.+.++.+.. .
T Consensus 174 ~l~-~l~~~~~~~~~L~~L~ls~N~i~~l~---~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~~-~ 247 (394)
T COG4886 174 DLS-DLPKLLSNLSNLNNLDLSGNKISDLP---PEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLED-L 247 (394)
T ss_pred hhh-hhhhhhhhhhhhhheeccCCccccCc---hhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceeee-c
Confidence 655 33333335566666666666554321 11223344666666666432 233445556666666666665542 2
Q ss_pred hhhccCCCCCcEEEecCccccCCCcccccCCCcccEEEccCCcccCC
Q 008876 225 PTSLGNLQDLTELYLNGNQLSGQIPKSISQLSQLIFLSISRNQIEGP 271 (550)
Q Consensus 225 ~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 271 (550)
+..++.++.++.|+++.|.+++... +....+++.++++++.+...
T Consensus 248 ~~~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~ 292 (394)
T COG4886 248 PESIGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSNA 292 (394)
T ss_pred cchhccccccceecccccccccccc--ccccCccCEEeccCcccccc
Confidence 3456667777888888777764433 66777778888877766643
No 40
>PLN03150 hypothetical protein; Provisional
Probab=98.72 E-value=2.4e-08 Score=103.01 Aligned_cols=114 Identities=31% Similarity=0.454 Sum_probs=102.0
Q ss_pred CeEEEeccCCCCCCCCCCCCCCCcccccEEeccCCcccCcCCcccccccccceeeCCCCccceeCCCcCCCCCCCcEEEC
Q 008876 408 SLTYIDLSDNGFSSGIELTGGGGQTGIRFLNLSRNVLEGQIPVSVGRLRSLRSLDLSYNKLGYVLPGSLANESSLETLKL 487 (550)
Q Consensus 408 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l 487 (550)
.++.|++++|.+.+.++. .+..+++|+.|++++|.+.+.+|..+..+++|+.|+|++|.++..+|+.+.++++|+.|++
T Consensus 419 ~v~~L~L~~n~L~g~ip~-~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~L 497 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPN-DISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNL 497 (623)
T ss_pred EEEEEECCCCCccccCCH-HHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEEC
Confidence 488999999999876665 5778999999999999999999999999999999999999999999999999999999999
Q ss_pred cCccccccCCCcccC-CCcCceeecCCccccccCCC
Q 008876 488 QNNRFTGRIPSEYLK-LKKLKELDLSHNLLVGEIPA 522 (550)
Q Consensus 488 ~~~~~~~~~~~~~~~-l~~L~~L~l~~n~~~~~~~~ 522 (550)
++|.+.+.+|..+.. ..++..+++.+|+..+..|.
T Consensus 498 s~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~ 533 (623)
T PLN03150 498 NGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPG 533 (623)
T ss_pred cCCcccccCChHHhhccccCceEEecCCccccCCCC
Confidence 999999999988776 46788999999988776554
No 41
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.69 E-value=9.4e-10 Score=104.66 Aligned_cols=182 Identities=29% Similarity=0.399 Sum_probs=122.9
Q ss_pred CCCccccccCcccEeeCCCCCCCCcCCCCCccCCCCCcEEeCCCccCCCCCchhhhhccCCcEEEcCCCcCCCccccccc
Q 008876 4 SLSPSISLLTSLEVLDLGGLVDLTGIIPPSIGCLQNLKKLYLYGNKLSGSVPESISKLLKLEELHLHENRLSGTLSSSLG 83 (550)
Q Consensus 4 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~ 83 (550)
.+|..+..|..|..+.+..|+ ...+|..++++..|++++++.|++. ..|..++.++ |+.|-+++|++. ..|..++
T Consensus 89 elp~~~~~f~~Le~liLy~n~--~r~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sNNkl~-~lp~~ig 163 (722)
T KOG0532|consen 89 ELPEEACAFVSLESLILYHNC--IRTIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSNNKLT-SLPEEIG 163 (722)
T ss_pred cCchHHHHHHHHHHHHHHhcc--ceecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEecCccc-cCCcccc
Confidence 456666666677777775532 2356777777788888888877776 6676676654 777777777776 6677777
Q ss_pred CCcccchhhccccccCccCchhccCCCCCCEEEcccccCccccchhhcCCCCcCeEeccCccccCcCCcccCCCCCCCEE
Q 008876 84 NLKNINQLLMHTNQFTGVIPDSFTNLTNLVRLDLHCNYLNGYIPEKIGELQLLEQLDFSNNLLRGKLPPSLCNLTVISVL 163 (550)
Q Consensus 84 ~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L 163 (550)
....|.+|+.+.|++. .+|..+..+.+|+.|++..|.+.. .|..+. .-.|..||++.|++. .+|-.|.+++.|++|
T Consensus 164 ~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~~-lp~El~-~LpLi~lDfScNkis-~iPv~fr~m~~Lq~l 239 (722)
T KOG0532|consen 164 LLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLED-LPEELC-SLPLIRLDFSCNKIS-YLPVDFRKMRHLQVL 239 (722)
T ss_pred cchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhhh-CCHHHh-CCceeeeecccCcee-ecchhhhhhhhheee
Confidence 7777888888887776 455567777777777777777763 344455 335777788877777 677777788888888
Q ss_pred EccCCcccccccCCCCCCCCCCccEEEcCCC
Q 008876 164 YLDNNKLEGAIPFPSSPGQMPSLGFLRLQDN 194 (550)
Q Consensus 164 ~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 194 (550)
.+.+|.+..+-.....-+...-.++|+...|
T Consensus 240 ~LenNPLqSPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 240 QLENNPLQSPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred eeccCCCCCChHHHHhccceeeeeeecchhc
Confidence 8887776544332223334445566666555
No 42
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.66 E-value=2.2e-10 Score=104.80 Aligned_cols=286 Identities=17% Similarity=0.101 Sum_probs=137.1
Q ss_pred CCcEEEcccCcccCc--chhhccCCCCCcEEEecCccc-cCCCcc-cccCCCcccEEEccCCc-ccCCCCCc-ccCCCCc
Q 008876 209 SLRRVSLANNKLEGA--IPTSLGNLQDLTELYLNGNQL-SGQIPK-SISQLSQLIFLSISRNQ-IEGPLPSG-MFSLQNL 282 (550)
Q Consensus 209 ~L~~L~l~~~~~~~~--~~~~l~~~~~L~~L~l~~~~~-~~~~~~-~l~~~~~L~~L~l~~~~-~~~~~~~~-~~~~~~L 282 (550)
.|++|.+.|+.-... .......+|++++|.+.++.. ++.... .-..|++++++++..|. +++..... ...+++|
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL 218 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL 218 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence 567777777643322 122334667777777766642 222111 22346667777766643 33222221 1246666
Q ss_pred cEEEccCCc-ccCCccchhcccCCCCcEEEeecccccccCCccccCCCCCccEEEcccccCCCCchhhhhccccccEEEc
Q 008876 283 QTLDLSFNL-LNLSSIPMWMAELPSLSRVYLAGCGIKGKIPEFFRTTPSPLQELDLSVNHLSGSIPAWIGSLTQLYSLNL 361 (550)
Q Consensus 283 ~~L~l~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 361 (550)
++++++.|+ ++..++....+.+..++.+...+|.-... + .+...-..+..+-++++
T Consensus 219 ~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~l--e---------------------~l~~~~~~~~~i~~lnl 275 (483)
T KOG4341|consen 219 KYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELEL--E---------------------ALLKAAAYCLEILKLNL 275 (483)
T ss_pred HHhhhccCchhhcCcchHHhccchhhhhhhhcccccccH--H---------------------HHHHHhccChHhhccch
Confidence 666666664 22333333444444455554444421100 0 00111122333333333
Q ss_pred cCCeeec-cCC-ccccCCCCCcEEEccCC-ccccccccccccCCCCCCCCeEEEeccCCCCC-CCCCCCCCCCcccccEE
Q 008876 362 SRNSLVS-SIP-ETITNLQDLVLLDLHSN-KLTGSISQVFKIGQRFPDGSLTYIDLSDNGFS-SGIELTGGGGQTGIRFL 437 (550)
Q Consensus 362 ~~~~~~~-~~~-~~l~~~~~L~~L~l~~~-~i~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~~L~~L 437 (550)
..|.... ... ..-..+..|+.++.+.+ .+++.....+... .++|+.+.+++|+.. +.......++++.|+.+
T Consensus 276 ~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~----~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l 351 (483)
T KOG4341|consen 276 QHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQH----CHNLQVLELSGCQQFSDRGFTMLGRNCPHLERL 351 (483)
T ss_pred hhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcC----CCceEEEeccccchhhhhhhhhhhcCChhhhhh
Confidence 3332211 100 01122344444444443 2222222222211 145566666555532 22222234567777777
Q ss_pred eccCCcccCc--CCcccccccccceeeCCCCc-cceeC----CCcCCCCCCCcEEECcCcccc-ccCCCcccCCCcCcee
Q 008876 438 NLSRNVLEGQ--IPVSVGRLRSLRSLDLSYNK-LGYVL----PGSLANESSLETLKLQNNRFT-GRIPSEYLKLKKLKEL 509 (550)
Q Consensus 438 ~l~~~~i~~~--~~~~l~~l~~L~~L~l~~n~-i~~~~----~~~l~~l~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L 509 (550)
++..+..... ....-.+++.|+.+.++.|. |++.. ...-.+...|..+.+++|+.+ +.....+..+++||.+
T Consensus 352 ~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri 431 (483)
T KOG4341|consen 352 DLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERI 431 (483)
T ss_pred cccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCccccee
Confidence 7777654311 23334557788888888775 33331 122234667888888888854 3333456667888888
Q ss_pred ecCCccccccCC
Q 008876 510 DLSHNLLVGEIP 521 (550)
Q Consensus 510 ~l~~n~~~~~~~ 521 (550)
++-+|.....-|
T Consensus 432 ~l~~~q~vtk~~ 443 (483)
T KOG4341|consen 432 ELIDCQDVTKEA 443 (483)
T ss_pred eeechhhhhhhh
Confidence 888886664444
No 43
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.62 E-value=6.2e-10 Score=97.32 Aligned_cols=180 Identities=18% Similarity=0.221 Sum_probs=122.0
Q ss_pred CCcEEEecCccccCC-CcccccCCCcccEEEccCCcccCCCCCcccCCCCccEEEccCCc-ccCCccchhcccCCCCcEE
Q 008876 233 DLTELYLNGNQLSGQ-IPKSISQLSQLIFLSISRNQIEGPLPSGMFSLQNLQTLDLSFNL-LNLSSIPMWMAELPSLSRV 310 (550)
Q Consensus 233 ~L~~L~l~~~~~~~~-~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~L~~L 310 (550)
.|+++|++...++.. +...+..|.+|+.|.+.++++.+.+...+..-.+|++++++.+. ++..+....+..|..|.+|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 588888888776532 33456788899999999998887777777788899999998774 3444556677889999999
Q ss_pred EeecccccccCC-ccccCCCCCccEEEcccccCC---CCchhhhhccccccEEEccCCeeec-cCCccccCCCCCcEEEc
Q 008876 311 YLAGCGIKGKIP-EFFRTTPSPLQELDLSVNHLS---GSIPAWIGSLTQLYSLNLSRNSLVS-SIPETITNLQDLVLLDL 385 (550)
Q Consensus 311 ~l~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~---~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~l~~~~~L~~L~l 385 (550)
+++.|....... .......++|+.|++++++-. ..+......+++|..|++++|.... .....+..++.|++|.+
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSl 345 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSL 345 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeeh
Confidence 999987654332 223344556888999887522 2233455678999999999886443 33455677888999999
Q ss_pred cCC-ccccccccccccCCCCCCCCeEEEeccCC
Q 008876 386 HSN-KLTGSISQVFKIGQRFPDGSLTYIDLSDN 417 (550)
Q Consensus 386 ~~~-~i~~~~~~~~~~~~~~~~~~L~~L~l~~~ 417 (550)
++| .|.......+... |+|.+|++.||
T Consensus 346 sRCY~i~p~~~~~l~s~-----psl~yLdv~g~ 373 (419)
T KOG2120|consen 346 SRCYDIIPETLLELNSK-----PSLVYLDVFGC 373 (419)
T ss_pred hhhcCCChHHeeeeccC-----cceEEEEeccc
Confidence 887 3321111112111 56666666554
No 44
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.58 E-value=5.4e-10 Score=97.69 Aligned_cols=62 Identities=23% Similarity=0.308 Sum_probs=27.5
Q ss_pred CCCcccEEEccCCc-ccCCCCCcccCCCCccEEEccCCcccCCccchhcccCCCCcEEEeecc
Q 008876 254 QLSQLIFLSISRNQ-IEGPLPSGMFSLQNLQTLDLSFNLLNLSSIPMWMAELPSLSRVYLAGC 315 (550)
Q Consensus 254 ~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 315 (550)
.||+|..|+++++. +.+.....+..++.|++|.++.|..-.......+...|.|.+|++.+|
T Consensus 311 rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 311 RCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred hCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEeccc
Confidence 45555555555543 222223334445555555555553211111122344455555555554
No 45
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.55 E-value=6.7e-10 Score=108.60 Aligned_cols=90 Identities=38% Similarity=0.389 Sum_probs=45.0
Q ss_pred ccccccccceeeCCCCccceeCCCcCCCCCCCcEEECcCccccccCCCcccCCCcCceeecCCccccc--cCCCCCCCCC
Q 008876 451 SVGRLRSLRSLDLSYNKLGYVLPGSLANESSLETLKLQNNRFTGRIPSEYLKLKKLKELDLSHNLLVG--EIPAGKPLSD 528 (550)
Q Consensus 451 ~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~--~~~~~~~~~~ 528 (550)
.+..+++|++|||++|.+....--.-.+++ |..|+++||.++.. -.++++.+|+-||++.|-+.+ ++-+--++..
T Consensus 204 ~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~ 280 (1096)
T KOG1859|consen 204 NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSS 280 (1096)
T ss_pred HHHhcccccccccccchhccccccchhhhh-heeeeecccHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHH
Confidence 445555566666666655432111112232 56666666655532 235556666666666665542 2222223455
Q ss_pred ccccCCCCCCCCCCC
Q 008876 529 FPESSFSGNRGLCGK 543 (550)
Q Consensus 529 ~~~l~~~~~~~~~~~ 543 (550)
+..|+++|||..|..
T Consensus 281 L~~L~LeGNPl~c~p 295 (1096)
T KOG1859|consen 281 LIVLWLEGNPLCCAP 295 (1096)
T ss_pred HHHHhhcCCccccCH
Confidence 555666666666643
No 46
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.52 E-value=3e-08 Score=87.02 Aligned_cols=228 Identities=18% Similarity=0.149 Sum_probs=147.6
Q ss_pred CCcEEEcccCcccCcch-hhc-cCCCCCcEEEecCccccCC--CcccccCCCcccEEEccCCcccCCCCCcccCCCCccE
Q 008876 209 SLRRVSLANNKLEGAIP-TSL-GNLQDLTELYLNGNQLSGQ--IPKSISQLSQLIFLSISRNQIEGPLPSGMFSLQNLQT 284 (550)
Q Consensus 209 ~L~~L~l~~~~~~~~~~-~~l-~~~~~L~~L~l~~~~~~~~--~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 284 (550)
.++-+.+.++.+..... ..| ..++.++++++.+|.+.+. ....+.++|.|+.|+++.|.+...+...-....+|+.
T Consensus 46 a~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~ 125 (418)
T KOG2982|consen 46 ALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRV 125 (418)
T ss_pred chhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEE
Confidence 44455566665543321 122 3457889999999988743 3445678999999999999887544322135678999
Q ss_pred EEccCCcccCCccchhcccCCCCcEEEeecccccccCCc--cccCCCCCccEEEcccccCCCC--chhhhhccccccEEE
Q 008876 285 LDLSFNLLNLSSIPMWMAELPSLSRVYLAGCGIKGKIPE--FFRTTPSPLQELDLSVNHLSGS--IPAWIGSLTQLYSLN 360 (550)
Q Consensus 285 L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~ 360 (550)
|.+.+..+.+......+..+|.++++.++.|.+...... ......+.+++++...|..... .......+|++..+.
T Consensus 126 lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~ 205 (418)
T KOG2982|consen 126 LVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVF 205 (418)
T ss_pred EEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchhee
Confidence 999999888888888888999999999998854322111 1111222377788877765411 223445688999999
Q ss_pred ccCCeeeccC-CccccCCCCCcEEEccCCccccccccccccCCCCCCCCeEEEeccCCCCCCCCCCC-----CCCCcccc
Q 008876 361 LSRNSLVSSI-PETITNLQDLVLLDLHSNKLTGSISQVFKIGQRFPDGSLTYIDLSDNGFSSGIELT-----GGGGQTGI 434 (550)
Q Consensus 361 l~~~~~~~~~-~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-----~~~~~~~L 434 (550)
+..|++.+.- ......+|.+--|+++.++|........-.. .+.|..|.++++++.+...-. .+..++++
T Consensus 206 v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~----f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v 281 (418)
T KOG2982|consen 206 VCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNG----FPQLVDLRVSENPLSDPLRGGERRFLLIARLTKV 281 (418)
T ss_pred eecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcC----CchhheeeccCCcccccccCCcceEEEEeeccce
Confidence 9999887643 3455667777788888888864433221111 178888888888876544421 23445666
Q ss_pred cEEecc
Q 008876 435 RFLNLS 440 (550)
Q Consensus 435 ~~L~l~ 440 (550)
+.|+=+
T Consensus 282 ~vLNGs 287 (418)
T KOG2982|consen 282 QVLNGS 287 (418)
T ss_pred EEecCc
Confidence 665544
No 47
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.50 E-value=1.4e-08 Score=100.22 Aligned_cols=219 Identities=32% Similarity=0.298 Sum_probs=113.8
Q ss_pred CCCCCcEEEecCccccCCCcccccCCCcccEEEccCCcccCCCCCcccCCCCccEEEccCCcccCCccchhcccCCCCcE
Q 008876 230 NLQDLTELYLNGNQLSGQIPKSISQLSQLIFLSISRNQIEGPLPSGMFSLQNLQTLDLSFNLLNLSSIPMWMAELPSLSR 309 (550)
Q Consensus 230 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~ 309 (550)
.+..++.+.++.+.+.. ....+..++++..+++.+|.+.. +...+..+++|+.|++++|.++.. ..+..++.|+.
T Consensus 70 ~l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~-i~~~l~~~~~L~~L~ls~N~I~~i---~~l~~l~~L~~ 144 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEK-IENLLSSLVNLQVLDLSFNKITKL---EGLSTLTLLKE 144 (414)
T ss_pred HhHhHHhhccchhhhhh-hhcccccccceeeeeccccchhh-cccchhhhhcchheeccccccccc---cchhhccchhh
Confidence 45566777777777663 23346677888888888888773 322255677888888888866533 23445555777
Q ss_pred EEeecccccccCCccccCCCCCccEEEcccccCCCCch-hhhhccccccEEEccCCeeeccCCccccCCCCCcEEEccCC
Q 008876 310 VYLAGCGIKGKIPEFFRTTPSPLQELDLSVNHLSGSIP-AWIGSLTQLYSLNLSRNSLVSSIPETITNLQDLVLLDLHSN 388 (550)
Q Consensus 310 L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 388 (550)
|++.+|.+........ ..+++.++++.|++..... . ...+.+++.+++.+|.+... ..+.....+..+++..|
T Consensus 145 L~l~~N~i~~~~~~~~---l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i--~~~~~~~~l~~~~l~~n 218 (414)
T KOG0531|consen 145 LNLSGNLISDISGLES---LKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREI--EGLDLLKKLVLLSLLDN 218 (414)
T ss_pred heeccCcchhccCCcc---chhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcc--cchHHHHHHHHhhcccc
Confidence 7777776654322211 3336666777766653332 1 35556666666666665533 22223333334455555
Q ss_pred ccccccccccccCCCCCCCCeEEEeccCCCCCCCCCCCCCCCcccccEEeccCCcccCcCCcccccccccceeeCCCCcc
Q 008876 389 KLTGSISQVFKIGQRFPDGSLTYIDLSDNGFSSGIELTGGGGQTGIRFLNLSRNVLEGQIPVSVGRLRSLRSLDLSYNKL 468 (550)
Q Consensus 389 ~i~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~i 468 (550)
.+........... ..|+.++++++++.... ..+..+..+..+++.++.+. ....+...+.+..+....+.+
T Consensus 219 ~i~~~~~l~~~~~-----~~L~~l~l~~n~i~~~~--~~~~~~~~l~~l~~~~n~~~--~~~~~~~~~~~~~~~~~~~~~ 289 (414)
T KOG0531|consen 219 KISKLEGLNELVM-----LHLRELYLSGNRISRSP--EGLENLKNLPVLDLSSNRIS--NLEGLERLPKLSELWLNDNKL 289 (414)
T ss_pred cceeccCcccchh-----HHHHHHhcccCcccccc--ccccccccccccchhhcccc--ccccccccchHHHhccCcchh
Confidence 5543222111100 01455555555543211 12334444555555555543 122233334444444444443
No 48
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.44 E-value=1.8e-08 Score=88.31 Aligned_cols=86 Identities=28% Similarity=0.278 Sum_probs=44.1
Q ss_pred CCCEEEccCCcccccccCCCCCCCCCCccEEEcCCCcccccCCCCccCCCCCcEEEcccCcccCc-chhhccCCCCCcEE
Q 008876 159 VISVLYLDNNKLEGAIPFPSSPGQMPSLGFLRLQDNNLTGKIPPTFGYLASLRRVSLANNKLEGA-IPTSLGNLQDLTEL 237 (550)
Q Consensus 159 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-~~~~l~~~~~L~~L 237 (550)
.++++++.+|.+.....+...+.++|.|+.|+++.|.+...+...-....+|+.+.+.|+.+... ....+..+|.++++
T Consensus 72 ~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtel 151 (418)
T KOG2982|consen 72 DVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTEL 151 (418)
T ss_pred hhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhh
Confidence 33444444444443333334455566666666666655432221113445677777776665422 22344566777777
Q ss_pred EecCccc
Q 008876 238 YLNGNQL 244 (550)
Q Consensus 238 ~l~~~~~ 244 (550)
.++.|.+
T Consensus 152 HmS~N~~ 158 (418)
T KOG2982|consen 152 HMSDNSL 158 (418)
T ss_pred hhccchh
Confidence 7776643
No 49
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.41 E-value=2.4e-08 Score=98.45 Aligned_cols=244 Identities=30% Similarity=0.388 Sum_probs=126.0
Q ss_pred hccCCcEEEcCCCcCCCcccccccCCcccchhhccccccCccCchhccCCCCCCEEEcccccCccccchhhcCCCCcCeE
Q 008876 60 KLLKLEELHLHENRLSGTLSSSLGNLKNINQLLMHTNQFTGVIPDSFTNLTNLVRLDLHCNYLNGYIPEKIGELQLLEQL 139 (550)
Q Consensus 60 ~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L 139 (550)
.+..++.+.++.+.+. .....+..+++|+.|++.++.+..+.. .+..+++|++|++++|.|..+ ..+..++.|+.|
T Consensus 70 ~l~~l~~l~l~~n~i~-~~~~~l~~~~~l~~l~l~~n~i~~i~~-~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L 145 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIA-KILNHLSKLKSLEALDLYDNKIEKIEN-LLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKEL 145 (414)
T ss_pred HhHhHHhhccchhhhh-hhhcccccccceeeeeccccchhhccc-chhhhhcchheeccccccccc--cchhhccchhhh
Confidence 4455555556655554 222335556666667776666653321 155566777777777766643 234555557777
Q ss_pred eccCccccCcCCcccCCCCCCCEEEccCCcccccccCCCCCCCCCCccEEEcCCCcccccCCCCccCCCCCcEEEcccCc
Q 008876 140 DFSNNLLRGKLPPSLCNLTVISVLYLDNNKLEGAIPFPSSPGQMPSLGFLRLQDNNLTGKIPPTFGYLASLRRVSLANNK 219 (550)
Q Consensus 140 ~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 219 (550)
++.+|.+.. ...+..+..|+.+++++|.+...... . ...+..++.+++.++.+... ..+.....+..+++..+.
T Consensus 146 ~l~~N~i~~--~~~~~~l~~L~~l~l~~n~i~~ie~~-~-~~~~~~l~~l~l~~n~i~~i--~~~~~~~~l~~~~l~~n~ 219 (414)
T KOG0531|consen 146 NLSGNLISD--ISGLESLKSLKLLDLSYNRIVDIEND-E-LSELISLEELDLGGNSIREI--EGLDLLKKLVLLSLLDNK 219 (414)
T ss_pred eeccCcchh--ccCCccchhhhcccCCcchhhhhhhh-h-hhhccchHHHhccCCchhcc--cchHHHHHHHHhhccccc
Confidence 777776652 12344466666777777665533211 0 35666777777777765422 223333344444555555
Q ss_pred ccCcchhhccCCCC--CcEEEecCccccCCCcccccCCCcccEEEccCCcccCCCCCcccCCCCccEEEccCCcccCC-c
Q 008876 220 LEGAIPTSLGNLQD--LTELYLNGNQLSGQIPKSISQLSQLIFLSISRNQIEGPLPSGMFSLQNLQTLDLSFNLLNLS-S 296 (550)
Q Consensus 220 ~~~~~~~~l~~~~~--L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~ 296 (550)
+....+ +...+. |+.+++.++++... ...+..++.+..+++.++.+... ..+...+.+..+....+.+... .
T Consensus 220 i~~~~~--l~~~~~~~L~~l~l~~n~i~~~-~~~~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 294 (414)
T KOG0531|consen 220 ISKLEG--LNELVMLHLRELYLSGNRISRS-PEGLENLKNLPVLDLSSNRISNL--EGLERLPKLSELWLNDNKLALSEA 294 (414)
T ss_pred ceeccC--cccchhHHHHHHhcccCccccc-cccccccccccccchhhcccccc--ccccccchHHHhccCcchhcchhh
Confidence 543211 222222 67777777766522 14455666777777777665522 1222333444444444432211 1
Q ss_pred cch--hcccCCCCcEEEeeccccc
Q 008876 297 IPM--WMAELPSLSRVYLAGCGIK 318 (550)
Q Consensus 297 ~~~--~~~~~~~L~~L~l~~~~~~ 318 (550)
... .....+.++.+.+..+...
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~ 318 (414)
T KOG0531|consen 295 ISQEYITSAAPTLVTLTLELNPIR 318 (414)
T ss_pred hhccccccccccccccccccCccc
Confidence 111 1334455666666655443
No 50
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.26 E-value=7e-08 Score=83.59 Aligned_cols=210 Identities=20% Similarity=0.173 Sum_probs=130.6
Q ss_pred ccCCCCCcEEeCCCccCCCCCchhhhh----ccCCcEEEcCCCcCCC----------cccccccCCcccchhhccccccC
Q 008876 34 IGCLQNLKKLYLYGNKLSGSVPESISK----LLKLEELHLHENRLSG----------TLSSSLGNLKNINQLLMHTNQFT 99 (550)
Q Consensus 34 l~~l~~L~~L~l~~~~~~~~~~~~~~~----l~~L~~L~l~~~~~~~----------~~~~~~~~l~~L~~L~l~~~~~~ 99 (550)
+..+..+..++++||.+.....+++++ -.+|+..+++.-.... ....++-+||+|+..++++|.+.
T Consensus 26 l~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg 105 (388)
T COG5238 26 LEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFG 105 (388)
T ss_pred HHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccC
Confidence 445778889999998876555555554 3578888877543211 12234568899999999998876
Q ss_pred ccCch----hccCCCCCCEEEcccccCccccchhh-------------cCCCCcCeEeccCccccCcCCc-----ccCCC
Q 008876 100 GVIPD----SFTNLTNLVRLDLHCNYLNGYIPEKI-------------GELQLLEQLDFSNNLLRGKLPP-----SLCNL 157 (550)
Q Consensus 100 ~~~~~----~l~~l~~L~~L~l~~~~~~~~~~~~l-------------~~l~~L~~L~l~~~~~~~~~~~-----~l~~~ 157 (550)
...|+ .++.-+.|.+|.+++|.+..+....+ .+-|.|+.+.+..|++. ..+. .+...
T Consensus 106 ~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRle-ngs~~~~a~~l~sh 184 (388)
T COG5238 106 SEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLE-NGSKELSAALLESH 184 (388)
T ss_pred cccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhc-cCcHHHHHHHHHhh
Confidence 55443 35667889999999888764422222 24578888888877765 2221 23344
Q ss_pred CCCCEEEccCCccccc--cc-CCCCCCCCCCccEEEcCCCcccc----cCCCCccCCCCCcEEEcccCcccCcchhhc--
Q 008876 158 TVISVLYLDNNKLEGA--IP-FPSSPGQMPSLGFLRLQDNNLTG----KIPPTFGYLASLRRVSLANNKLEGAIPTSL-- 228 (550)
Q Consensus 158 ~~L~~L~l~~~~~~~~--~~-~~~~~~~~~~L~~L~l~~~~~~~----~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l-- 228 (550)
..|+.+.+..|.+... .. ....+..+.+|+.|++..|.++. .+...+..++.|++|.+.+|-+.......+
T Consensus 185 ~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~ 264 (388)
T COG5238 185 ENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLR 264 (388)
T ss_pred cCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHH
Confidence 5778888877766422 00 11234566788888888876652 233344556667777777776654433222
Q ss_pred ----cCCCCCcEEEecCccc
Q 008876 229 ----GNLQDLTELYLNGNQL 244 (550)
Q Consensus 229 ----~~~~~L~~L~l~~~~~ 244 (550)
...|+|+.|...+|..
T Consensus 265 ~f~e~~~p~l~~L~~~Yne~ 284 (388)
T COG5238 265 RFNEKFVPNLMPLPGDYNER 284 (388)
T ss_pred HhhhhcCCCccccccchhhh
Confidence 1346666666666543
No 51
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.15 E-value=1.6e-06 Score=89.32 Aligned_cols=105 Identities=25% Similarity=0.364 Sum_probs=50.2
Q ss_pred cccEeeCCCCCCCCcCCCCCcc-CCCCCcEEeCCCccCCCC-CchhhhhccCCcEEEcCCCcCCCcccccccCCcccchh
Q 008876 14 SLEVLDLGGLVDLTGIIPPSIG-CLQNLKKLYLYGNKLSGS-VPESISKLLKLEELHLHENRLSGTLSSSLGNLKNINQL 91 (550)
Q Consensus 14 ~L~~L~l~~~~~~~~~~~~~l~-~l~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 91 (550)
+|+.|+++|...+....|..++ .+|.|+.|.+.+-.+... +.+....+|+|..||++++.+... ..++++++|+.|
T Consensus 123 nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L 200 (699)
T KOG3665|consen 123 NLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVL 200 (699)
T ss_pred hhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHH
Confidence 4555555554444444554444 455556555555443311 122223455566666655555422 445555555555
Q ss_pred hccccccCc-cCchhccCCCCCCEEEcccc
Q 008876 92 LMHTNQFTG-VIPDSFTNLTNLVRLDLHCN 120 (550)
Q Consensus 92 ~l~~~~~~~-~~~~~l~~l~~L~~L~l~~~ 120 (550)
.+.+-.+.. .-...+-.+++|++||+|..
T Consensus 201 ~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~ 230 (699)
T KOG3665|consen 201 SMRNLEFESYQDLIDLFNLKKLRVLDISRD 230 (699)
T ss_pred hccCCCCCchhhHHHHhcccCCCeeecccc
Confidence 555443331 11112334555555555543
No 52
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.12 E-value=3.7e-08 Score=96.79 Aligned_cols=180 Identities=26% Similarity=0.296 Sum_probs=111.1
Q ss_pred CCCccCCCCCcEEeCCCccCCCCCchhhhh-ccCCcEEEcCCCc--CCCccc---cccc---CCcccchhhccccccCcc
Q 008876 31 PPSIGCLQNLKKLYLYGNKLSGSVPESISK-LLKLEELHLHENR--LSGTLS---SSLG---NLKNINQLLMHTNQFTGV 101 (550)
Q Consensus 31 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~-l~~L~~L~l~~~~--~~~~~~---~~~~---~l~~L~~L~l~~~~~~~~ 101 (550)
|-.+..+..||+|.+.++.+.. ...+.. -.+|+.|-..+.- +...+. ..+. -.-.|...+.+.|.+. .
T Consensus 102 pi~ifpF~sLr~LElrg~~L~~--~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~-~ 178 (1096)
T KOG1859|consen 102 PISIFPFRSLRVLELRGCDLST--AKGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSPVWNKLATASFSYNRLV-L 178 (1096)
T ss_pred CceeccccceeeEEecCcchhh--hhhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccchhhhhHhhhhcchhhHH-h
Confidence 5567788899999999988753 122222 2356666444320 000000 1111 1335666677777765 4
Q ss_pred CchhccCCCCCCEEEcccccCccccchhhcCCCCcCeEeccCccccCcCCcc-cCCCCCCCEEEccCCcccccccCCCCC
Q 008876 102 IPDSFTNLTNLVRLDLHCNYLNGYIPEKIGELQLLEQLDFSNNLLRGKLPPS-LCNLTVISVLYLDNNKLEGAIPFPSSP 180 (550)
Q Consensus 102 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-l~~~~~L~~L~l~~~~~~~~~~~~~~~ 180 (550)
+-.++.-++.+++|++++|.++.. +.+..+++|++||+++|.+. .+|.. ...+ +|..|.+++|.+... ..+
T Consensus 179 mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc-~L~~L~lrnN~l~tL----~gi 250 (1096)
T KOG1859|consen 179 MDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGC-KLQLLNLRNNALTTL----RGI 250 (1096)
T ss_pred HHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhc-cccccchhhh-hheeeeecccHHHhh----hhH
Confidence 556677778888888888887744 36778888888888888776 33322 2233 388888888876543 446
Q ss_pred CCCCCccEEEcCCCccccc-CCCCccCCCCCcEEEcccCccc
Q 008876 181 GQMPSLGFLRLQDNNLTGK-IPPTFGYLASLRRVSLANNKLE 221 (550)
Q Consensus 181 ~~~~~L~~L~l~~~~~~~~-~~~~l~~~~~L~~L~l~~~~~~ 221 (550)
.++.+|+.||++.|-+.+. -...+..+..|+.|.+.||++.
T Consensus 251 e~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 251 ENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred HhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 6778888888888755422 1122345567778888887764
No 53
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.02 E-value=5.4e-07 Score=78.25 Aligned_cols=122 Identities=20% Similarity=0.145 Sum_probs=55.5
Q ss_pred hhhhccccccEEEccCCeeeccCCccc-------------cCCCCCcEEEccCCccccccccccccCCCCCCCCeEEEec
Q 008876 348 AWIGSLTQLYSLNLSRNSLVSSIPETI-------------TNLQDLVLLDLHSNKLTGSISQVFKIGQRFPDGSLTYIDL 414 (550)
Q Consensus 348 ~~~~~~~~L~~L~l~~~~~~~~~~~~l-------------~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~L~~L~l 414 (550)
..+++-..|..|++.+|.+..+.-..+ ..-|.|+++...+|++............... ..|+++.+
T Consensus 114 d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh-~~lk~vki 192 (388)
T COG5238 114 DLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESH-ENLKEVKI 192 (388)
T ss_pred HHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhh-cCceeEEe
Confidence 345555666777777766543221111 2345566666666665543332222211111 35555555
Q ss_pred cCCCCCCCCC----CCCCCCcccccEEeccCCcccCcCC----cccccccccceeeCCCCccce
Q 008876 415 SDNGFSSGIE----LTGGGGQTGIRFLNLSRNVLEGQIP----VSVGRLRSLRSLDLSYNKLGY 470 (550)
Q Consensus 415 ~~~~~~~~~~----~~~~~~~~~L~~L~l~~~~i~~~~~----~~l~~l~~L~~L~l~~n~i~~ 470 (550)
..|.+..... ......+.+|+.|++.+|.++.... .++..++.|++|.+..|-++.
T Consensus 193 ~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~ 256 (388)
T COG5238 193 QQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSN 256 (388)
T ss_pred eecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhcc
Confidence 5555432200 1112234555555555555542222 223334445555555554443
No 54
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.94 E-value=2.7e-06 Score=87.78 Aligned_cols=138 Identities=22% Similarity=0.187 Sum_probs=95.1
Q ss_pred CCCCccc-cccCcccEeeCCCCCCCCcCCCCCccCCCCCcEEeCCCccCCCCCchhhhhccCCcEEEcCCCcCCC-cccc
Q 008876 3 GSLSPSI-SLLTSLEVLDLGGLVDLTGIIPPSIGCLQNLKKLYLYGNKLSGSVPESISKLLKLEELHLHENRLSG-TLSS 80 (550)
Q Consensus 3 ~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~ 80 (550)
..+|..+ .-+|+|+.|.+.+-.-..++......++|+|+.|||+++.++.. .+++++++||+|.+++-.+.. ....
T Consensus 137 ~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~~l~ 214 (699)
T KOG3665|consen 137 NGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQDLI 214 (699)
T ss_pred ccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHHhccCCCCCchhhHH
Confidence 3445554 56899999999993333334444567999999999999999844 778999999999999877653 3345
Q ss_pred cccCCcccchhhccccccCccC------chhccCCCCCCEEEcccccCccccc-hhhcCCCCcCeEecc
Q 008876 81 SLGNLKNINQLLMHTNQFTGVI------PDSFTNLTNLVRLDLHCNYLNGYIP-EKIGELQLLEQLDFS 142 (550)
Q Consensus 81 ~~~~l~~L~~L~l~~~~~~~~~------~~~l~~l~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~ 142 (550)
.+..+++|++||+|........ -+.-..+|+|+.||++++.+..... ..+..-++|+.+..-
T Consensus 215 ~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~i~~~ 283 (699)
T KOG3665|consen 215 DLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQIAAL 283 (699)
T ss_pred HHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhhhhhh
Confidence 6789999999999987554221 1122347788888888776654322 223345555555544
No 55
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.86 E-value=0.0001 Score=70.10 Aligned_cols=134 Identities=18% Similarity=0.229 Sum_probs=62.1
Q ss_pred CccEEEcccccCCCCchhhhhccccccEEEccCCeeeccCCccccCCCCCcEEEccCC-ccccccccccccCCCCCCCCe
Q 008876 331 PLQELDLSVNHLSGSIPAWIGSLTQLYSLNLSRNSLVSSIPETITNLQDLVLLDLHSN-KLTGSISQVFKIGQRFPDGSL 409 (550)
Q Consensus 331 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~-~i~~~~~~~~~~~~~~~~~~L 409 (550)
+++.|++++|.++.. + .-.++|+.|++++|......+..+ .++|+.|++++| .+.. ++ +.|
T Consensus 53 ~l~~L~Is~c~L~sL-P---~LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~s-----LP-------~sL 114 (426)
T PRK15386 53 ASGRLYIKDCDIESL-P---VLPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISG-----LP-------ESV 114 (426)
T ss_pred CCCEEEeCCCCCccc-C---CCCCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccc-----cc-------ccc
Confidence 366667766655522 2 122356666666654433333332 245666666665 3321 11 356
Q ss_pred EEEeccCCCCCCCCCCCCCCCcccccEEeccCCcccCcCCcccccccccceeeCCCCccceeCCCcCCCCCCCcEEECcC
Q 008876 410 TYIDLSDNGFSSGIELTGGGGQTGIRFLNLSRNVLEGQIPVSVGRLRSLRSLDLSYNKLGYVLPGSLANESSLETLKLQN 489 (550)
Q Consensus 410 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~ 489 (550)
+.|++.++.... .-.-+++|+.|.+.++.-.......-.-+++|++|++++|... ..|..++ .+|+.|.+++
T Consensus 115 e~L~L~~n~~~~-----L~~LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~ 186 (426)
T PRK15386 115 RSLEIKGSATDS-----IKNVPNGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNI-ILPEKLP--ESLQSITLHI 186 (426)
T ss_pred ceEEeCCCCCcc-----cccCcchHhheeccccccccccccccccCCcccEEEecCCCcc-cCccccc--ccCcEEEecc
Confidence 666655433221 1123345566665432210000000011245666666666544 2343343 4666666655
Q ss_pred c
Q 008876 490 N 490 (550)
Q Consensus 490 ~ 490 (550)
+
T Consensus 187 n 187 (426)
T PRK15386 187 E 187 (426)
T ss_pred c
Confidence 4
No 56
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.85 E-value=3.1e-05 Score=62.75 Aligned_cols=123 Identities=17% Similarity=0.223 Sum_probs=51.2
Q ss_pred ccccccCcccEeeCCCCCCCCcCCCCCccCCCCCcEEeCCCccCCCCCchhhhhccCCcEEEcCCCcCCCcccccccCCc
Q 008876 7 PSISLLTSLEVLDLGGLVDLTGIIPPSIGCLQNLKKLYLYGNKLSGSVPESISKLLKLEELHLHENRLSGTLSSSLGNLK 86 (550)
Q Consensus 7 ~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~ 86 (550)
.+|.++++|+.+.+.. .+...-..+|..+++|+.+.+.++ +.......|..+++|+.+.+.+ .+.......|..++
T Consensus 6 ~~F~~~~~l~~i~~~~--~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~ 81 (129)
T PF13306_consen 6 NAFYNCSNLESITFPN--TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCT 81 (129)
T ss_dssp TTTTT-TT--EEEETS--T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-T
T ss_pred HHHhCCCCCCEEEECC--CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccc
Confidence 3466666777777654 233333344666666777766654 4434444566666667776654 23323344555566
Q ss_pred ccchhhccccccCccCchhccCCCCCCEEEcccccCccccchhhcCCCCc
Q 008876 87 NINQLLMHTNQFTGVIPDSFTNLTNLVRLDLHCNYLNGYIPEKIGELQLL 136 (550)
Q Consensus 87 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L 136 (550)
+|+.+.+..+ +......+|.++ +|+.+.+.. .+..+....|.++++|
T Consensus 82 ~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 82 NLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL 128 (129)
T ss_dssp TECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred cccccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence 6666666543 333444455555 666666544 3333444555555554
No 57
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.82 E-value=3.8e-05 Score=64.09 Aligned_cols=58 Identities=28% Similarity=0.310 Sum_probs=26.3
Q ss_pred ccEEEcccccCCCCchhhhhccccccEEEccCCeeeccCCccccCCCCCcEEEccCCccc
Q 008876 332 LQELDLSVNHLSGSIPAWIGSLTQLYSLNLSRNSLVSSIPETITNLQDLVLLDLHSNKLT 391 (550)
Q Consensus 332 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~ 391 (550)
...+|+++|.+... ..|..++.|.+|.+.+|.|+.+.+..-..+++|+.|.+.+|+|-
T Consensus 44 ~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~ 101 (233)
T KOG1644|consen 44 FDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQ 101 (233)
T ss_pred cceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchh
Confidence 44445555444311 23444445555555555554444433334444555555544443
No 58
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.79 E-value=9.7e-05 Score=59.83 Aligned_cols=124 Identities=15% Similarity=0.174 Sum_probs=54.4
Q ss_pred hhhhccccccEEEccCCeeeccCCccccCCCCCcEEEccCCccccccccccccCCCCCCCCeEEEeccCCCCCCCCCCCC
Q 008876 348 AWIGSLTQLYSLNLSRNSLVSSIPETITNLQDLVLLDLHSNKLTGSISQVFKIGQRFPDGSLTYIDLSDNGFSSGIELTG 427 (550)
Q Consensus 348 ~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 427 (550)
..|..+.+|+.+.+.. .+.......+.++++++.+.+..+ +...+.. .
T Consensus 6 ~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~------------------------------~ 53 (129)
T PF13306_consen 6 NAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDN------------------------------A 53 (129)
T ss_dssp TTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TT------------------------------T
T ss_pred HHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-cccccee------------------------------e
Confidence 4566666777777664 344455556666666666666553 3333322 3
Q ss_pred CCCcccccEEeccCCcccCcCCcccccccccceeeCCCCccceeCCCcCCCCCCCcEEECcCccccccCCCcccCCCcCc
Q 008876 428 GGGQTGIRFLNLSRNVLEGQIPVSVGRLRSLRSLDLSYNKLGYVLPGSLANESSLETLKLQNNRFTGRIPSEYLKLKKLK 507 (550)
Q Consensus 428 ~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 507 (550)
+..+++++.+.+.+ .+......+|..+++++.+++..+ +..+...+|.++ +|+.+.+.+ .+..+....|.++++|+
T Consensus 54 F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l~ 129 (129)
T PF13306_consen 54 FSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKLK 129 (129)
T ss_dssp TTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG------
T ss_pred eecccccccccccc-cccccccccccccccccccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccCC
Confidence 44555566666654 333344556666777777777654 555556666666 777777765 44434445566666654
No 59
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.76 E-value=0.0002 Score=68.23 Aligned_cols=161 Identities=18% Similarity=0.262 Sum_probs=95.2
Q ss_pred cccCCCCcEEEeecccccccCCccccCCCCCccEEEcccccCCCCchhhhhccccccEEEccCCeeeccCCccccCCCCC
Q 008876 301 MAELPSLSRVYLAGCGIKGKIPEFFRTTPSPLQELDLSVNHLSGSIPAWIGSLTQLYSLNLSRNSLVSSIPETITNLQDL 380 (550)
Q Consensus 301 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L 380 (550)
+..+.+++.|++++|.+... + ..+.+|+.|.+++|.-....+..+ .++|+.|++++|..... -.+.|
T Consensus 48 ~~~~~~l~~L~Is~c~L~sL-P----~LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~s------LP~sL 114 (426)
T PRK15386 48 IEEARASGRLYIKDCDIESL-P----VLPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISG------LPESV 114 (426)
T ss_pred HHHhcCCCEEEeCCCCCccc-C----CCCCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccc------ccccc
Confidence 34468889999998866543 2 456679999998865433444433 36889999998842211 13468
Q ss_pred cEEEccCCccccccccccccCCCCCCCCeEEEeccCCCCCCCCCCCCCCCcccccEEeccCCcccCcCCcccccccccce
Q 008876 381 VLLDLHSNKLTGSISQVFKIGQRFPDGSLTYIDLSDNGFSSGIELTGGGGQTGIRFLNLSRNVLEGQIPVSVGRLRSLRS 460 (550)
Q Consensus 381 ~~L~l~~~~i~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~ 460 (550)
+.|++.++...... .+ | ++|+.|.+.++........ ...-+++|++|++.+|... ..|..+ ..+|+.
T Consensus 115 e~L~L~~n~~~~L~--~L------P-ssLk~L~I~~~n~~~~~~l-p~~LPsSLk~L~Is~c~~i-~LP~~L--P~SLk~ 181 (426)
T PRK15386 115 RSLEIKGSATDSIK--NV------P-NGLTSLSINSYNPENQARI-DNLISPSLKTLSLTGCSNI-ILPEKL--PESLQS 181 (426)
T ss_pred ceEEeCCCCCcccc--cC------c-chHhheecccccccccccc-ccccCCcccEEEecCCCcc-cCcccc--cccCcE
Confidence 88888766543221 11 2 5788888754331111110 1124578999999988865 233333 357889
Q ss_pred eeCCCCccc--eeCCCcCCCCCCCcEEECcCc
Q 008876 461 LDLSYNKLG--YVLPGSLANESSLETLKLQNN 490 (550)
Q Consensus 461 L~l~~n~i~--~~~~~~l~~l~~L~~L~l~~~ 490 (550)
|+++.+... .+....++ +++ .|++.+|
T Consensus 182 L~ls~n~~~sLeI~~~sLP--~nl-~L~f~n~ 210 (426)
T PRK15386 182 ITLHIEQKTTWNISFEGFP--DGL-DIDLQNS 210 (426)
T ss_pred EEecccccccccCcccccc--ccc-Eechhhh
Confidence 988876322 12222333 455 7777766
No 60
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.74 E-value=2.2e-06 Score=66.51 Aligned_cols=91 Identities=24% Similarity=0.285 Sum_probs=59.3
Q ss_pred CcccccEEeccCCcccCcCCcccccccccceeeCCCCccceeCCCcCCCCCCCcEEECcCccccccCCCccc--CCCcCc
Q 008876 430 GQTGIRFLNLSRNVLEGQIPVSVGRLRSLRSLDLSYNKLGYVLPGSLANESSLETLKLQNNRFTGRIPSEYL--KLKKLK 507 (550)
Q Consensus 430 ~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~--~l~~L~ 507 (550)
.++.+++|++.+|.|+ .+|+.+..++.|+.|+++.|++.. .|.-+..+.++..|+..++....+ +..+. .++-|.
T Consensus 75 kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~~-~p~vi~~L~~l~~Lds~~na~~ei-d~dl~~s~~~al~ 151 (177)
T KOG4579|consen 75 KFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLNA-EPRVIAPLIKLDMLDSPENARAEI-DVDLFYSSLPALI 151 (177)
T ss_pred ccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCcccc-chHHHHHHHhHHHhcCCCCccccC-cHHHhccccHHHH
Confidence 4556777777777777 456668888888888888888874 444555577788888777776633 33222 233333
Q ss_pred eeecCCccccccCCCCCC
Q 008876 508 ELDLSHNLLVGEIPAGKP 525 (550)
Q Consensus 508 ~L~l~~n~~~~~~~~~~~ 525 (550)
.++++++.+.-+...+
T Consensus 152 --~lgnepl~~~~~~klq 167 (177)
T KOG4579|consen 152 --KLGNEPLGDETKKKLQ 167 (177)
T ss_pred --HhcCCcccccCccccc
Confidence 3467777776665543
No 61
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.72 E-value=2.1e-05 Score=49.10 Aligned_cols=36 Identities=44% Similarity=0.620 Sum_probs=16.6
Q ss_pred ccceeeCCCCccceeCCCcCCCCCCCcEEECcCcccc
Q 008876 457 SLRSLDLSYNKLGYVLPGSLANESSLETLKLQNNRFT 493 (550)
Q Consensus 457 ~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~~~ 493 (550)
+|++|++++|+|+++ |..++++++|++|++++|+++
T Consensus 2 ~L~~L~l~~N~i~~l-~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQITDL-PPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-SSH-GGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCccc-CchHhCCCCCCEEEecCCCCC
Confidence 455555555555532 223445555555555555544
No 62
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.71 E-value=4.6e-05 Score=63.65 Aligned_cols=83 Identities=27% Similarity=0.330 Sum_probs=40.6
Q ss_pred CCcEEEcCCCcCCCcccccccCCcccchhhccccccCccCchhccCCCCCCEEEcccccCcccc-chhhcCCCCcCeEec
Q 008876 63 KLEELHLHENRLSGTLSSSLGNLKNINQLLMHTNQFTGVIPDSFTNLTNLVRLDLHCNYLNGYI-PEKIGELQLLEQLDF 141 (550)
Q Consensus 63 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~-~~~l~~l~~L~~L~l 141 (550)
+...+||++|.+. ....|..++.|..|.++.|+|+.+.|.--..+++|+.|.+.+|.+.... .+.+..+++|++|.+
T Consensus 43 ~~d~iDLtdNdl~--~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltl 120 (233)
T KOG1644|consen 43 QFDAIDLTDNDLR--KLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTL 120 (233)
T ss_pred ccceecccccchh--hcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeee
Confidence 4455555555442 1223344555555555555555444443344555555555555554321 123445555555555
Q ss_pred cCcccc
Q 008876 142 SNNLLR 147 (550)
Q Consensus 142 ~~~~~~ 147 (550)
-+|+++
T Consensus 121 l~Npv~ 126 (233)
T KOG1644|consen 121 LGNPVE 126 (233)
T ss_pred cCCchh
Confidence 555443
No 63
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.69 E-value=5.3e-05 Score=47.32 Aligned_cols=37 Identities=38% Similarity=0.615 Sum_probs=21.7
Q ss_pred CCCcEEeCCCccCCCCCchhhhhccCCcEEEcCCCcCC
Q 008876 38 QNLKKLYLYGNKLSGSVPESISKLLKLEELHLHENRLS 75 (550)
Q Consensus 38 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 75 (550)
++|++|++++++++ .+|..+.++++|++|++++|.+.
T Consensus 1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 35666666666666 34445666666666666666655
No 64
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.45 E-value=8.2e-06 Score=83.13 Aligned_cols=113 Identities=18% Similarity=0.053 Sum_probs=60.2
Q ss_pred CCcccchhhccccccCcc--CchhccCCCCCCEEEcccc-c-Cccc---cchhhcCCCCcCeEeccCcc-ccCcCCcccC
Q 008876 84 NLKNINQLLMHTNQFTGV--IPDSFTNLTNLVRLDLHCN-Y-LNGY---IPEKIGELQLLEQLDFSNNL-LRGKLPPSLC 155 (550)
Q Consensus 84 ~l~~L~~L~l~~~~~~~~--~~~~l~~l~~L~~L~l~~~-~-~~~~---~~~~l~~l~~L~~L~l~~~~-~~~~~~~~l~ 155 (550)
.++.|+.+.+.++..... .......+++|+.|+++.+ . +... .......+.+|+.++++++. +++.....+.
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~ 265 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA 265 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence 467777777766643322 2233456677777777652 1 1111 11122345677777777665 4433333333
Q ss_pred -CCCCCCEEEccCCcccccccCCCCCCCCCCccEEEcCCCcc
Q 008876 156 -NLTVISVLYLDNNKLEGAIPFPSSPGQMPSLGFLRLQDNNL 196 (550)
Q Consensus 156 -~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 196 (550)
.+++|+.|.+..|.......+......+++|++|+++++..
T Consensus 266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG 307 (482)
T ss_pred hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence 26677777766665322333334445667777777776644
No 65
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.31 E-value=1.7e-05 Score=61.67 Aligned_cols=112 Identities=21% Similarity=0.178 Sum_probs=82.8
Q ss_pred CcccccEEeccCCcccCcCCcccccccccceeeCCCCccceeCCCcCCCCCCCcEEECcCccccccCCCcccCCCcCcee
Q 008876 430 GQTGIRFLNLSRNVLEGQIPVSVGRLRSLRSLDLSYNKLGYVLPGSLANESSLETLKLQNNRFTGRIPSEYLKLKKLKEL 509 (550)
Q Consensus 430 ~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 509 (550)
....|+..++++|.+.+..++.-.+.+..+.+++++|.|.+ .|+.+..++.|+.|+++.|++. ..|..+..+.+|-.|
T Consensus 51 ~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisd-vPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~L 128 (177)
T KOG4579|consen 51 KGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISD-VPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDML 128 (177)
T ss_pred CCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhh-chHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHh
Confidence 44556677777777774444444556789999999999996 4566889999999999999999 567777779999999
Q ss_pred ecCCccccccCCCCCCCCCcc-ccCCCCCCCCCCCC
Q 008876 510 DLSHNLLVGEIPAGKPLSDFP-ESSFSGNRGLCGKP 544 (550)
Q Consensus 510 ~l~~n~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~ 544 (550)
+.-+|... ++|...-.++.+ -...+++||-=+|.
T Consensus 129 ds~~na~~-eid~dl~~s~~~al~~lgnepl~~~~~ 163 (177)
T KOG4579|consen 129 DSPENARA-EIDVDLFYSSLPALIKLGNEPLGDETK 163 (177)
T ss_pred cCCCCccc-cCcHHHhccccHHHHHhcCCcccccCc
Confidence 99999885 455433344444 34558888765554
No 66
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.30 E-value=7e-05 Score=65.41 Aligned_cols=126 Identities=24% Similarity=0.224 Sum_probs=63.9
Q ss_pred cEeeCCCCCCCCcCCCCCccCCCCCcEEeCCCccCCCCCchhhhhccCCcEEEcCCC--cCCCcccccccCCcccchhhc
Q 008876 16 EVLDLGGLVDLTGIIPPSIGCLQNLKKLYLYGNKLSGSVPESISKLLKLEELHLHEN--RLSGTLSSSLGNLKNINQLLM 93 (550)
Q Consensus 16 ~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~--~~~~~~~~~~~~l~~L~~L~l 93 (550)
+.+.+.+|......+......+..|..+++.+..++.. ..|..+++|++|.++.| ++....+....++++|+++++
T Consensus 21 ~~l~lD~~~s~~g~~~gl~d~~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~l 98 (260)
T KOG2739|consen 21 DELFLDNARSGAGKLGGLTDEFVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNL 98 (260)
T ss_pred hhhhcchhhhcCCCcccccccccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEee
Confidence 33444444333333444444556666666666655421 23556667777777766 333233333445577777777
Q ss_pred cccccCcc-CchhccCCCCCCEEEcccccCcccc---chhhcCCCCcCeEeccC
Q 008876 94 HTNQFTGV-IPDSFTNLTNLVRLDLHCNYLNGYI---PEKIGELQLLEQLDFSN 143 (550)
Q Consensus 94 ~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~---~~~l~~l~~L~~L~l~~ 143 (550)
++|++... -...+..+++|..|++.+|...... ...|.-+++|++|+-..
T Consensus 99 s~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~d 152 (260)
T KOG2739|consen 99 SGNKIKDLSTLRPLKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCD 152 (260)
T ss_pred cCCccccccccchhhhhcchhhhhcccCCccccccHHHHHHHHhhhhccccccc
Confidence 77666521 0112344555666666665544321 12344455555555443
No 67
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.29 E-value=2.7e-05 Score=79.38 Aligned_cols=241 Identities=23% Similarity=0.150 Sum_probs=109.8
Q ss_pred CCCcccEEEccCCcccCC--CCCcccCCCCccEEEccCCc--ccCC--ccchhcccCCCCcEEEeeccc-ccccCCcccc
Q 008876 254 QLSQLIFLSISRNQIEGP--LPSGMFSLQNLQTLDLSFNL--LNLS--SIPMWMAELPSLSRVYLAGCG-IKGKIPEFFR 326 (550)
Q Consensus 254 ~~~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~l~~~~--~~~~--~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~ 326 (550)
.++.|+.+.+.++.-... .......++.|+.|+++++. +... ........+++|+.+++..+. +++.....+.
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~ 265 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA 265 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence 357777777776643222 12233356777777776521 1111 112233445666666666665 4444444444
Q ss_pred CCCCCccEEEccccc-CCCCc-hhhhhccccccEEEccCCeeecc--CCccccCCCCCcEEEccCCccccccccccccCC
Q 008876 327 TTPSPLQELDLSVNH-LSGSI-PAWIGSLTQLYSLNLSRNSLVSS--IPETITNLQDLVLLDLHSNKLTGSISQVFKIGQ 402 (550)
Q Consensus 327 ~~~~~L~~L~l~~~~-~~~~~-~~~~~~~~~L~~L~l~~~~~~~~--~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~ 402 (550)
...++|+.|.+.+|. +++.. ......++.|+.|++++|..... ......++++++.+.+.....
T Consensus 266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~------------ 333 (482)
T KOG1947|consen 266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNG------------ 333 (482)
T ss_pred hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCC------------
Confidence 444456666655555 33332 22334455666666666554311 111123344444444332211
Q ss_pred CCCCCCeEEEeccCCCCCC--CCCCCCCCCcccccEEeccCCcccCcC-CcccccccccceeeCCCCccceeCCCcCCCC
Q 008876 403 RFPDGSLTYIDLSDNGFSS--GIELTGGGGQTGIRFLNLSRNVLEGQI-PVSVGRLRSLRSLDLSYNKLGYVLPGSLANE 479 (550)
Q Consensus 403 ~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~~L~~L~l~~~~i~~~~-~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l 479 (550)
...++.+.+.++.... .........++.++.+.+..+.+.... ...+.+++.|. ..+.. .....
T Consensus 334 ---c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l~-~~l~~---------~~~~~ 400 (482)
T KOG1947|consen 334 ---CPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCGISDLGLELSLRGCPNLT-ESLEL---------RLCRS 400 (482)
T ss_pred ---CccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhhccCcchHHHhcCCcccc-hHHHH---------HhccC
Confidence 0223333333222211 222223455666666666665533222 12333333331 11100 11111
Q ss_pred CCCcEEECcCccccccC-CCcccC-CCcCceeecCCcccccc
Q 008876 480 SSLETLKLQNNRFTGRI-PSEYLK-LKKLKELDLSHNLLVGE 519 (550)
Q Consensus 480 ~~L~~L~l~~~~~~~~~-~~~~~~-l~~L~~L~l~~n~~~~~ 519 (550)
.+++.|+++.|...... -..... +..++.+++.++...+.
T Consensus 401 ~~l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~~~~ 442 (482)
T KOG1947|consen 401 DSLRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRVITL 442 (482)
T ss_pred CccceEecccCccccccchHHHhhhhhccccCCccCcccccc
Confidence 22778888888754321 111222 66778888888776643
No 68
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.12 E-value=1.6e-05 Score=69.65 Aligned_cols=98 Identities=24% Similarity=0.241 Sum_probs=65.9
Q ss_pred CeEEEeccCCCCCCCCCCCCCCCcccccEEeccCCcccCcCCcccccccccceeeCCCCccceeCC-CcCCCCCCCcEEE
Q 008876 408 SLTYIDLSDNGFSSGIELTGGGGQTGIRFLNLSRNVLEGQIPVSVGRLRSLRSLDLSYNKLGYVLP-GSLANESSLETLK 486 (550)
Q Consensus 408 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~-~~l~~l~~L~~L~ 486 (550)
+.+.|++.||++.+ +.....++.|++|.|+-|.|++. ..+..|++|++|+|+.|.|.++.. +.+.++++|++|.
T Consensus 20 ~vkKLNcwg~~L~D---Isic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LW 94 (388)
T KOG2123|consen 20 NVKKLNCWGCGLDD---ISICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLW 94 (388)
T ss_pred HhhhhcccCCCccH---HHHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHh
Confidence 34444444444433 11345677888888888888743 557888999999999998875321 3467888999999
Q ss_pred CcCccccccCCCc-----ccCCCcCceee
Q 008876 487 LQNNRFTGRIPSE-----YLKLKKLKELD 510 (550)
Q Consensus 487 l~~~~~~~~~~~~-----~~~l~~L~~L~ 510 (550)
|..|+=.+..+.. +..+|+|++|+
T Consensus 95 L~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 95 LDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hccCCcccccchhHHHHHHHHcccchhcc
Confidence 9988855433322 34588888875
No 69
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.77 E-value=0.00011 Score=64.42 Aligned_cols=100 Identities=27% Similarity=0.310 Sum_probs=52.4
Q ss_pred cCcccEeeCCCCCCCCcCCCCCccCCCCCcEEeCCCccCCCCCchhhhhccCCcEEEcCCCcCCCcc-cccccCCcccch
Q 008876 12 LTSLEVLDLGGLVDLTGIIPPSIGCLQNLKKLYLYGNKLSGSVPESISKLLKLEELHLHENRLSGTL-SSSLGNLKNINQ 90 (550)
Q Consensus 12 ~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~ 90 (550)
+.+.+.|++.|| .++++ ....+|+-|++|.++-|+++. ...+.+|.+|+.|+|+.|.+.+.. ..-+.++++|+.
T Consensus 18 l~~vkKLNcwg~-~L~DI--sic~kMp~lEVLsLSvNkIss--L~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~ 92 (388)
T KOG2123|consen 18 LENVKKLNCWGC-GLDDI--SICEKMPLLEVLSLSVNKISS--LAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRT 92 (388)
T ss_pred HHHhhhhcccCC-CccHH--HHHHhcccceeEEeecccccc--chhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhh
Confidence 445566666663 33322 123466666666666666652 233556666666666666554322 122456666666
Q ss_pred hhccccccCccCch-----hccCCCCCCEEE
Q 008876 91 LLMHTNQFTGVIPD-----SFTNLTNLVRLD 116 (550)
Q Consensus 91 L~l~~~~~~~~~~~-----~l~~l~~L~~L~ 116 (550)
|+|..|-..+..+. .++-+|+|++||
T Consensus 93 LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 93 LWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred HhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 66665544322211 244556666654
No 70
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.28 E-value=0.0031 Score=55.37 Aligned_cols=90 Identities=21% Similarity=0.212 Sum_probs=65.6
Q ss_pred CCCCcccccEEeccCCcccCcCCcccccccccceeeCCCC--ccceeCCCcCCCCCCCcEEECcCcccccc-CCCcccCC
Q 008876 427 GGGGQTGIRFLNLSRNVLEGQIPVSVGRLRSLRSLDLSYN--KLGYVLPGSLANESSLETLKLQNNRFTGR-IPSEYLKL 503 (550)
Q Consensus 427 ~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n--~i~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~~~~~l 503 (550)
....+..++.+.+.+..+++ ...+-.+++|+.|.++.| .+..-++-....+++|++|++++|++... ....+..+
T Consensus 38 l~d~~~~le~ls~~n~gltt--~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l 115 (260)
T KOG2739|consen 38 LTDEFVELELLSVINVGLTT--LTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKEL 115 (260)
T ss_pred ccccccchhhhhhhccceee--cccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhh
Confidence 34566777788888877763 345667889999999999 55544444445669999999999998731 11235668
Q ss_pred CcCceeecCCccccc
Q 008876 504 KKLKELDLSHNLLVG 518 (550)
Q Consensus 504 ~~L~~L~l~~n~~~~ 518 (550)
++|..|++.+|+.+.
T Consensus 116 ~nL~~Ldl~n~~~~~ 130 (260)
T KOG2739|consen 116 ENLKSLDLFNCSVTN 130 (260)
T ss_pred cchhhhhcccCCccc
Confidence 889999999998886
No 71
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=95.47 E-value=4.5e-05 Score=75.40 Aligned_cols=87 Identities=29% Similarity=0.242 Sum_probs=42.5
Q ss_pred CcEEEeecccccccCCccc----cCCCCCccEEEcccccCCCCchhhh----hcc-ccccEEEccCCeeeccCC----cc
Q 008876 307 LSRVYLAGCGIKGKIPEFF----RTTPSPLQELDLSVNHLSGSIPAWI----GSL-TQLYSLNLSRNSLVSSIP----ET 373 (550)
Q Consensus 307 L~~L~l~~~~~~~~~~~~~----~~~~~~L~~L~l~~~~~~~~~~~~~----~~~-~~L~~L~l~~~~~~~~~~----~~ 373 (550)
+..+.+.+|.+.+.....+ ...+ .|+.|++++|.+.+.....+ ... ..++.|++..|.++.... +.
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~-~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~ 167 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLP-TLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAV 167 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccc-cHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHH
Confidence 5556666665554333222 1222 26666677666653332222 121 344556666666554322 23
Q ss_pred ccCCCCCcEEEccCCcccccc
Q 008876 374 ITNLQDLVLLDLHSNKLTGSI 394 (550)
Q Consensus 374 l~~~~~L~~L~l~~~~i~~~~ 394 (550)
+.....+++++++.|.+...+
T Consensus 168 L~~~~~l~~l~l~~n~l~~~g 188 (478)
T KOG4308|consen 168 LEKNEHLTELDLSLNGLIELG 188 (478)
T ss_pred HhcccchhHHHHHhcccchhh
Confidence 344556666666666554333
No 72
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.02 E-value=0.0019 Score=54.38 Aligned_cols=35 Identities=29% Similarity=0.199 Sum_probs=15.4
Q ss_pred cccceeeCCCC-ccceeCCCcCCCCCCCcEEECcCc
Q 008876 456 RSLRSLDLSYN-KLGYVLPGSLANESSLETLKLQNN 490 (550)
Q Consensus 456 ~~L~~L~l~~n-~i~~~~~~~l~~l~~L~~L~l~~~ 490 (550)
++|+.|+|++| +|++-.-.++..+++|+.|++++-
T Consensus 151 ~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l 186 (221)
T KOG3864|consen 151 PSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYDL 186 (221)
T ss_pred cchheeeccCCCeechhHHHHHHHhhhhHHHHhcCc
Confidence 34444444444 244433334444444444444443
No 73
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.84 E-value=0.014 Score=30.00 Aligned_cols=12 Identities=58% Similarity=0.581 Sum_probs=7.0
Q ss_pred cceeeCCCCccc
Q 008876 458 LRSLDLSYNKLG 469 (550)
Q Consensus 458 L~~L~l~~n~i~ 469 (550)
|++|+|++|+++
T Consensus 2 L~~Ldls~n~l~ 13 (22)
T PF00560_consen 2 LEYLDLSGNNLT 13 (22)
T ss_dssp ESEEEETSSEES
T ss_pred ccEEECCCCcCE
Confidence 555566666555
No 74
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.37 E-value=0.0078 Score=50.74 Aligned_cols=81 Identities=17% Similarity=0.139 Sum_probs=47.1
Q ss_pred CCcEEeCCCccCCCCCchhhhhccCCcEEEcCCCcCCCc-cccccc-CCcccchhhcccc-ccCccCchhccCCCCCCEE
Q 008876 39 NLKKLYLYGNKLSGSVPESISKLLKLEELHLHENRLSGT-LSSSLG-NLKNINQLLMHTN-QFTGVIPDSFTNLTNLVRL 115 (550)
Q Consensus 39 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~-~l~~L~~L~l~~~-~~~~~~~~~l~~l~~L~~L 115 (550)
.++.++-+++.+..+..+.+.+++.++.|.+.+|+--+. ....+. -.++|+.|++++| +|++..-..+..+++|+.|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 456666666666655555566667777777777652211 111121 3467777777766 3555555556667777777
Q ss_pred Eccc
Q 008876 116 DLHC 119 (550)
Q Consensus 116 ~l~~ 119 (550)
.+..
T Consensus 182 ~l~~ 185 (221)
T KOG3864|consen 182 HLYD 185 (221)
T ss_pred HhcC
Confidence 6544
No 75
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=94.32 E-value=0.00016 Score=71.49 Aligned_cols=186 Identities=30% Similarity=0.260 Sum_probs=128.6
Q ss_pred ccEEEcccccCCCCch----hhhhccccccEEEccCCeeeccCCc----cccCC-CCCcEEEccCCccccccccccccCC
Q 008876 332 LQELDLSVNHLSGSIP----AWIGSLTQLYSLNLSRNSLVSSIPE----TITNL-QDLVLLDLHSNKLTGSISQVFKIGQ 402 (550)
Q Consensus 332 L~~L~l~~~~~~~~~~----~~~~~~~~L~~L~l~~~~~~~~~~~----~l~~~-~~L~~L~l~~~~i~~~~~~~~~~~~ 402 (550)
+..+.+..|.+.+... ..+...+.|..+++++|.+.+.... .+... ..++.|++..|.++..+........
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 7788888888875433 3456678899999999998864332 23333 5678888888988887776555443
Q ss_pred CCCCCCeEEEeccCCCCCCCCCC---CC----CCCcccccEEeccCCcccCc----CCcccccccc-cceeeCCCCccce
Q 008876 403 RFPDGSLTYIDLSDNGFSSGIEL---TG----GGGQTGIRFLNLSRNVLEGQ----IPVSVGRLRS-LRSLDLSYNKLGY 470 (550)
Q Consensus 403 ~~~~~~L~~L~l~~~~~~~~~~~---~~----~~~~~~L~~L~l~~~~i~~~----~~~~l~~l~~-L~~L~l~~n~i~~ 470 (550)
.. ...++.++++.|.+...... .. +....++++|.+++|.++.. +...+...+. +.++++..|.+.+
T Consensus 169 ~~-~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d 247 (478)
T KOG4308|consen 169 EK-NEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGD 247 (478)
T ss_pred hc-ccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcch
Confidence 33 47889999998887421111 11 22466788999999988733 2223445555 7779999998875
Q ss_pred e----CCCcCCCC-CCCcEEECcCccccccCCC----cccCCCcCceeecCCccccc
Q 008876 471 V----LPGSLANE-SSLETLKLQNNRFTGRIPS----EYLKLKKLKELDLSHNLLVG 518 (550)
Q Consensus 471 ~----~~~~l~~l-~~L~~L~l~~~~~~~~~~~----~~~~l~~L~~L~l~~n~~~~ 518 (550)
. ....+..+ ..+++++++.|++++.... .+.++++++++.+..|++..
T Consensus 248 ~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 248 VGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred HHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence 4 22344555 6889999999999865433 34567899999999998874
No 76
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=93.65 E-value=0.032 Score=28.70 Aligned_cols=17 Identities=53% Similarity=0.669 Sum_probs=8.7
Q ss_pred CceeecCCccccccCCCC
Q 008876 506 LKELDLSHNLLVGEIPAG 523 (550)
Q Consensus 506 L~~L~l~~n~~~~~~~~~ 523 (550)
|++|++++|.++ .+|.+
T Consensus 2 L~~Ldls~n~l~-~ip~~ 18 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSS 18 (22)
T ss_dssp ESEEEETSSEES-EEGTT
T ss_pred ccEEECCCCcCE-eCChh
Confidence 455555555554 44444
No 77
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=91.58 E-value=0.099 Score=24.84 Aligned_cols=12 Identities=58% Similarity=0.808 Sum_probs=5.3
Q ss_pred cCceeecCCccc
Q 008876 505 KLKELDLSHNLL 516 (550)
Q Consensus 505 ~L~~L~l~~n~~ 516 (550)
+|+.|++++|.+
T Consensus 2 ~L~~L~l~~n~L 13 (17)
T PF13504_consen 2 NLRTLDLSNNRL 13 (17)
T ss_dssp T-SEEEETSS--
T ss_pred ccCEEECCCCCC
Confidence 455556665554
No 78
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=88.68 E-value=0.27 Score=26.39 Aligned_cols=17 Identities=47% Similarity=0.583 Sum_probs=9.1
Q ss_pred cccceeeCCCCccceeC
Q 008876 456 RSLRSLDLSYNKLGYVL 472 (550)
Q Consensus 456 ~~L~~L~l~~n~i~~~~ 472 (550)
++|++|+|++|.|..+.
T Consensus 2 ~~L~~L~L~~N~l~~lp 18 (26)
T smart00369 2 PNLRELDLSNNQLSSLP 18 (26)
T ss_pred CCCCEEECCCCcCCcCC
Confidence 34555555555555443
No 79
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=88.68 E-value=0.27 Score=26.39 Aligned_cols=17 Identities=47% Similarity=0.583 Sum_probs=9.1
Q ss_pred cccceeeCCCCccceeC
Q 008876 456 RSLRSLDLSYNKLGYVL 472 (550)
Q Consensus 456 ~~L~~L~l~~n~i~~~~ 472 (550)
++|++|+|++|.|..+.
T Consensus 2 ~~L~~L~L~~N~l~~lp 18 (26)
T smart00370 2 PNLRELDLSNNQLSSLP 18 (26)
T ss_pred CCCCEEECCCCcCCcCC
Confidence 34555555555555443
No 80
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=84.65 E-value=0.046 Score=47.30 Aligned_cols=88 Identities=20% Similarity=0.204 Sum_probs=65.4
Q ss_pred CCCCcccccEEeccCCcccCcCCcccccccccceeeCCCCccceeCCCcCCCCCCCcEEECcCccccccCCCcccCCCcC
Q 008876 427 GGGGQTGIRFLNLSRNVLEGQIPVSVGRLRSLRSLDLSYNKLGYVLPGSLANESSLETLKLQNNRFTGRIPSEYLKLKKL 506 (550)
Q Consensus 427 ~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L 506 (550)
.+..+...+.||++.|.+. -.-..|+.++.+.+|+++.|.+. ..|+.+.+...+..++..+|... ..|..+...|++
T Consensus 37 ei~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~ 113 (326)
T KOG0473|consen 37 EIASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHP 113 (326)
T ss_pred hhhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCc
Confidence 3455666777777777765 23445666778888888888887 46677777777888888877777 577788888888
Q ss_pred ceeecCCcccc
Q 008876 507 KELDLSHNLLV 517 (550)
Q Consensus 507 ~~L~l~~n~~~ 517 (550)
++++.-++++.
T Consensus 114 k~~e~k~~~~~ 124 (326)
T KOG0473|consen 114 KKNEQKKTEFF 124 (326)
T ss_pred chhhhccCcch
Confidence 88888888765
No 81
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=83.83 E-value=0.23 Score=26.07 Aligned_cols=12 Identities=42% Similarity=0.581 Sum_probs=4.3
Q ss_pred CCcEEeCCCccC
Q 008876 39 NLKKLYLYGNKL 50 (550)
Q Consensus 39 ~L~~L~l~~~~~ 50 (550)
+|++|++++|++
T Consensus 3 ~L~~L~l~~n~i 14 (24)
T PF13516_consen 3 NLETLDLSNNQI 14 (24)
T ss_dssp T-SEEE-TSSBE
T ss_pred CCCEEEccCCcC
Confidence 344444444443
No 82
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=82.53 E-value=0.076 Score=46.01 Aligned_cols=82 Identities=18% Similarity=0.226 Sum_probs=32.8
Q ss_pred CCCCCcEEeCCCccCCCCCchhhhhccCCcEEEcCCCcCCCcccccccCCcccchhhccccccCccCchhccCCCCCCEE
Q 008876 36 CLQNLKKLYLYGNKLSGSVPESISKLLKLEELHLHENRLSGTLSSSLGNLKNINQLLMHTNQFTGVIPDSFTNLTNLVRL 115 (550)
Q Consensus 36 ~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L 115 (550)
...+-+.||++.+++. .....|..+..|..|+++.+.+. ..|..+.....+++++...|... ..|.+++..+.++++
T Consensus 40 ~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~ 116 (326)
T KOG0473|consen 40 SFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKN 116 (326)
T ss_pred ccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchh
Confidence 3344444444444432 22233334444444444444333 33444444444444444333332 333344444444444
Q ss_pred Ecccc
Q 008876 116 DLHCN 120 (550)
Q Consensus 116 ~l~~~ 120 (550)
+...+
T Consensus 117 e~k~~ 121 (326)
T KOG0473|consen 117 EQKKT 121 (326)
T ss_pred hhccC
Confidence 44333
No 83
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=80.87 E-value=1.2 Score=23.83 Aligned_cols=18 Identities=33% Similarity=0.466 Sum_probs=11.1
Q ss_pred cCcccEeeCCCCCCCCcC
Q 008876 12 LTSLEVLDLGGLVDLTGI 29 (550)
Q Consensus 12 ~~~L~~L~l~~~~~~~~~ 29 (550)
+++|+.|++++|..+++.
T Consensus 1 c~~L~~L~l~~C~~itD~ 18 (26)
T smart00367 1 CPNLRELDLSGCTNITDE 18 (26)
T ss_pred CCCCCEeCCCCCCCcCHH
Confidence 456666666666665543
No 84
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=80.26 E-value=1.5 Score=23.52 Aligned_cols=15 Identities=47% Similarity=0.558 Sum_probs=9.3
Q ss_pred cccceeeCCCCccce
Q 008876 456 RSLRSLDLSYNKLGY 470 (550)
Q Consensus 456 ~~L~~L~l~~n~i~~ 470 (550)
++|+.|++++|+|+.
T Consensus 2 ~~L~~L~L~~NkI~~ 16 (26)
T smart00365 2 TNLEELDLSQNKIKK 16 (26)
T ss_pred CccCEEECCCCccce
Confidence 456666666666654
No 85
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=68.87 E-value=2.5 Score=41.94 Aligned_cols=64 Identities=30% Similarity=0.260 Sum_probs=37.9
Q ss_pred CCcccccEEeccCCcccCc--CCcccccccccceeeCCCC--ccceeCCCcCC--CCCCCcEEECcCccccc
Q 008876 429 GGQTGIRFLNLSRNVLEGQ--IPVSVGRLRSLRSLDLSYN--KLGYVLPGSLA--NESSLETLKLQNNRFTG 494 (550)
Q Consensus 429 ~~~~~L~~L~l~~~~i~~~--~~~~l~~l~~L~~L~l~~n--~i~~~~~~~l~--~l~~L~~L~l~~~~~~~ 494 (550)
.+.+.+..+.+++|.+... ....-...|+|+.|+|++| .+... ..+. +...|++|-+.||++..
T Consensus 215 ~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~--~el~K~k~l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 215 ENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSE--SELDKLKGLPLEELVLEGNPLCT 284 (585)
T ss_pred cCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcch--hhhhhhcCCCHHHeeecCCcccc
Confidence 4566677778888877522 1122234577888888888 33321 1111 23467788888887754
No 86
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=68.67 E-value=3.3 Score=22.65 Aligned_cols=15 Identities=73% Similarity=0.855 Sum_probs=9.0
Q ss_pred cccceeeCCCCccce
Q 008876 456 RSLRSLDLSYNKLGY 470 (550)
Q Consensus 456 ~~L~~L~l~~n~i~~ 470 (550)
++|++|+|++|.+++
T Consensus 2 ~~L~~LdL~~N~i~~ 16 (28)
T smart00368 2 PSLRELDLSNNKLGD 16 (28)
T ss_pred CccCEEECCCCCCCH
Confidence 356666666666654
No 87
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=67.70 E-value=27 Score=34.34 Aligned_cols=61 Identities=25% Similarity=0.244 Sum_probs=38.0
Q ss_pred ccEEeccCCcccCcC---CcccccccccceeeCCCCccce----eCCCcCCCCCCCcEEECcCccccc
Q 008876 434 IRFLNLSRNVLEGQI---PVSVGRLRSLRSLDLSYNKLGY----VLPGSLANESSLETLKLQNNRFTG 494 (550)
Q Consensus 434 L~~L~l~~~~i~~~~---~~~l~~l~~L~~L~l~~n~i~~----~~~~~l~~l~~L~~L~l~~~~~~~ 494 (550)
+..+.++.|...... ...+..-+.+..|++++|.+.+ .+|.+++....++.+..+.|....
T Consensus 415 l~el~ls~~~lka~l~s~in~l~stqtl~kldisgn~mgd~gap~lpkalq~n~rlr~ipds~n~p~~ 482 (553)
T KOG4242|consen 415 LAELSLSPGPLKAGLESAINKLLSTQTLAKLDISGNGMGDGGAPPLPKALQSNCRLRPIPDSLNLPED 482 (553)
T ss_pred ccCcccCCCcccccHHHHHHhhccCcccccccccCCCcccCCCCcCccccCCCCccCCCCCCCCCccc
Confidence 556666666554221 1123344678888888887765 455566666677777777776653
No 88
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=61.45 E-value=5.7 Score=21.32 Aligned_cols=18 Identities=44% Similarity=0.713 Sum_probs=12.8
Q ss_pred CcCceeecCCccccccCCC
Q 008876 504 KKLKELDLSHNLLVGEIPA 522 (550)
Q Consensus 504 ~~L~~L~l~~n~~~~~~~~ 522 (550)
++|+.|++++|.++ ++|+
T Consensus 2 ~~L~~L~vs~N~Lt-~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLT-SLPE 19 (26)
T ss_pred cccceeecCCCccc-cCcc
Confidence 46778888888875 4665
No 89
>PF01030 Recep_L_domain: Receptor L domain; InterPro: IPR000494 The type-1 insulin-like growth-factor receptor (IGF-1R) and insulin receptor (IR) are closely related members of the tyrosine-kinase receptor superfamily IPR000719 from INTERPRO. IR is essential for glucose homeostasis, whereas IGF-1R is involved in both normal growth and development and malignant transformation. Homologues of these receptors are found in animals as simple as cnidarians. The epidermal growth-factor receptor (EGFR) family is closely related to the IR family and has significant sequence identity to the first three domains of the extracellular portion of IGF-IR (L1-Cys-rich-L2). The L domains each consist of a single-stranded right-handed beta-helix. The Cys-rich region is composed of eight disulphide-bonded modules, seven of which form a rod-shaped domain with modules associated in an unusual manner. The three domains surround a central space of sufficient size to accommodate a ligand molecule. Although the fragment (residues 1-462) does not bind ligand, many of the determinants responsible for hormone binding and ligand specificity map to this central site. This structure therefore shows how the IR subfamily might interact with their ligands[]. A number of receptor systems have been implicated to play an important role in the development and progression of many human cancers. The epidermal growth factor (EGF) receptor tyrosine kinase family has been found to consistently play a leading role in tumor progression [].; GO: 0016020 membrane; PDB: 1IGR_A 1N8Y_C 3U2P_A 2AHX_A 1IVO_B 3NJP_B 1NQL_A 3QWQ_A 1MOX_A 1YY9_A ....
Probab=49.03 E-value=16 Score=28.17 Aligned_cols=16 Identities=31% Similarity=0.430 Sum_probs=12.9
Q ss_pred cccCCCCCCCCCCCCC
Q 008876 530 PESSFSGNRGLCGKPL 545 (550)
Q Consensus 530 ~~l~~~~~~~~~~~~~ 545 (550)
..+.+.+||.+|..+-
T Consensus 89 ~~v~i~~N~~Lc~~~~ 104 (112)
T PF01030_consen 89 GSVVISNNPNLCYTPS 104 (112)
T ss_dssp SEEEEESBTTSBSTTT
T ss_pred CeEEEeCCchhcCcCh
Confidence 6788999999997653
No 90
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=44.50 E-value=1.7e+02 Score=29.21 Aligned_cols=280 Identities=19% Similarity=0.068 Sum_probs=122.7
Q ss_pred CcccEeeCCCCCCCCcCCCCCcc--CCCCCcEEeCCCccCCCCCchhhh---hccCCcEEEcCCCcCCCcccccccC---
Q 008876 13 TSLEVLDLGGLVDLTGIIPPSIG--CLQNLKKLYLYGNKLSGSVPESIS---KLLKLEELHLHENRLSGTLSSSLGN--- 84 (550)
Q Consensus 13 ~~L~~L~l~~~~~~~~~~~~~l~--~l~~L~~L~l~~~~~~~~~~~~~~---~l~~L~~L~l~~~~~~~~~~~~~~~--- 84 (550)
+-+++++++-+ .+.+.+|-.+. .++ +++..|+.++.+-..+. .-..+.+++++.+...+..+..+..
T Consensus 165 pr~r~~dls~n-pi~dkvpihl~~p~~p----l~lr~c~lsskfis~l~~qsg~~~lteldls~n~~Kddip~~~n~~a~ 239 (553)
T KOG4242|consen 165 PRARQHDLSPN-PIGDKVPIHLPQPGNP----LSLRVCELSSKFISKLLIQSGRLWLTELDLSTNGGKDDIPRTLNKKAG 239 (553)
T ss_pred chhhhhccCCC-cccccCCccccCCCCc----cchhhhhhhhhHHHHhhhhhccccccccccccCCCCccchhHHHHhhh
Confidence 45677888873 44445554442 222 55555655432211111 1235777888877655444443322
Q ss_pred CcccchhhccccccCcc---CchhccCCCCCCEEEcccccCcc----cc----chhhcCCCCcCeEeccCccccCcC-Cc
Q 008876 85 LKNINQLLMHTNQFTGV---IPDSFTNLTNLVRLDLHCNYLNG----YI----PEKIGELQLLEQLDFSNNLLRGKL-PP 152 (550)
Q Consensus 85 l~~L~~L~l~~~~~~~~---~~~~l~~l~~L~~L~l~~~~~~~----~~----~~~l~~l~~L~~L~l~~~~~~~~~-~~ 152 (550)
-..+++++.++..+.-. .+...+.-++++..+++.+..+. .. -+.+..-.++ +|++..++....- +.
T Consensus 240 ~~vl~~ld~s~tgirlD~l~~~l~~g~~tkl~~~kls~ng~s~skg~Egg~~~k~~fS~~~sg-hln~~~~~~psE~lks 318 (553)
T KOG4242|consen 240 TLVLFKLDRSTTGIRLDLLTSPLAAGRTTKLTFGKLSRNGTSPSKGEEGGGAEKDTFSPDPSG-HLNSRPRYTPSEKLKS 318 (553)
T ss_pred hhhhhcccccccccchhhcccccccccccccchhhhccCCCCcccccccccccccccCcCccc-ccccccccCchhhhhh
Confidence 23456666666544311 22233445677777776654431 11 1233444566 6666665433211 11
Q ss_pred ccC---CCCCC--CEEEccCCcccccccCCCCCCCCCCccEEEcCCCcccccCCCC--ccCCCCCcEEEcccCcccCc-c
Q 008876 153 SLC---NLTVI--SVLYLDNNKLEGAIPFPSSPGQMPSLGFLRLQDNNLTGKIPPT--FGYLASLRRVSLANNKLEGA-I 224 (550)
Q Consensus 153 ~l~---~~~~L--~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~--l~~~~~L~~L~l~~~~~~~~-~ 224 (550)
.+- ..... -.++++.|...+.... .+-..-..++++.+..+......... ...-+..+.+.+-+..-... .
T Consensus 319 ~LLgla~ne~t~g~rldl~~cp~~~a~vl-eaci~g~R~q~l~~rdnnldgeg~~vgk~~~s~s~r~l~agrs~~kqvm~ 397 (553)
T KOG4242|consen 319 MLLGLAENEATLGARLDLRRCPLERAEVL-EACIFGQRVQVLLQRDNNLDGEGGAVGKRKQSKSGRILKAGRSGDKQVMD 397 (553)
T ss_pred hhcccccccccccccCChhhccccccchh-hccccceeeeEeeccccccccccccccceeeccccccccccccCCceecc
Confidence 110 00000 1233344433222111 11111123666666665544322222 12233444444433221000 0
Q ss_pred hhh----c----cCCCCCcEEEecCccccCCCc---ccccCCCcccEEEccCCcccCC----CCCcccCCCCccEEEccC
Q 008876 225 PTS----L----GNLQDLTELYLNGNQLSGQIP---KSISQLSQLIFLSISRNQIEGP----LPSGMFSLQNLQTLDLSF 289 (550)
Q Consensus 225 ~~~----l----~~~~~L~~L~l~~~~~~~~~~---~~l~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~ 289 (550)
... . ...--+..+.++.+....... ..+..-+.+..|+++++.-.+. ++.....-..++.+..+.
T Consensus 398 s~~~a~~v~k~~~~~g~l~el~ls~~~lka~l~s~in~l~stqtl~kldisgn~mgd~gap~lpkalq~n~rlr~ipds~ 477 (553)
T KOG4242|consen 398 SSTEAPPVSKKSRTHGVLAELSLSPGPLKAGLESAINKLLSTQTLAKLDISGNGMGDGGAPPLPKALQSNCRLRPIPDSL 477 (553)
T ss_pred ccccchhhhhhhcccccccCcccCCCcccccHHHHHHhhccCcccccccccCCCcccCCCCcCccccCCCCccCCCCCCC
Confidence 000 0 111235566666665543221 1233446778888888764421 233333334566666666
Q ss_pred CcccCCccch
Q 008876 290 NLLNLSSIPM 299 (550)
Q Consensus 290 ~~~~~~~~~~ 299 (550)
+..+...+..
T Consensus 478 n~p~~~gl~p 487 (553)
T KOG4242|consen 478 NLPEDPGLGP 487 (553)
T ss_pred CCccccccch
Confidence 6554444433
No 91
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=41.38 E-value=13 Score=37.19 Aligned_cols=36 Identities=36% Similarity=0.395 Sum_probs=15.3
Q ss_pred CCcccEEEccCCcccCC--CCCcccCCCCccEEEccCC
Q 008876 255 LSQLIFLSISRNQIEGP--LPSGMFSLQNLQTLDLSFN 290 (550)
Q Consensus 255 ~~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~l~~~ 290 (550)
.+.+..+.+++|++... +..-....|+|+.|++++|
T Consensus 217 ~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N 254 (585)
T KOG3763|consen 217 FPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHN 254 (585)
T ss_pred CcceeeeecccchhhchhhhhHHHHhcchhheeecccc
Confidence 34455555555554321 1111112455555555554
No 92
>PF05725 FNIP: FNIP Repeat; InterPro: IPR008615 This repeat is approximately 22 residues long and is only found in Dictyostelium discoideum (Slime mould). It appears to be related to IPR001611 from INTERPRO. The alignment consists of two tandem repeats. It is termed the FNIP repeat after the pattern of conserved residues.
Probab=35.85 E-value=52 Score=20.22 Aligned_cols=31 Identities=35% Similarity=0.410 Sum_probs=14.6
Q ss_pred cccceeeCCCCccceeCCCcCCCCCCCcEEECc
Q 008876 456 RSLRSLDLSYNKLGYVLPGSLANESSLETLKLQ 488 (550)
Q Consensus 456 ~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~ 488 (550)
+++++|.++++.-..+.+..++ ++|++|.+.
T Consensus 12 ~~l~~L~~g~~fn~~i~~~~lP--~sl~~L~fg 42 (44)
T PF05725_consen 12 SSLKSLIFGSSFNQPIEPGSLP--NSLKSLSFG 42 (44)
T ss_pred CCCeEEEECCccCccCCCCccC--CCceEEEee
Confidence 3566666644432223333343 456665554
No 93
>KOG1665 consensus AFH1-interacting protein FIP2, contains BTB/POZ domain and pentapeptide repeats [General function prediction only]
Probab=25.30 E-value=1.5e+02 Score=25.96 Aligned_cols=15 Identities=13% Similarity=-0.055 Sum_probs=6.7
Q ss_pred cccccEEeccCCccc
Q 008876 431 QTGIRFLNLSRNVLE 445 (550)
Q Consensus 431 ~~~L~~L~l~~~~i~ 445 (550)
+.+.+--.+..|++.
T Consensus 195 caN~eGA~L~gcNfe 209 (302)
T KOG1665|consen 195 CANAEGASLKGCNFE 209 (302)
T ss_pred ecccccccccCcCCC
Confidence 333444444455554
Done!