Query 008876
Match_columns 550
No_of_seqs 230 out of 2923
Neff 11.0
Searched_HMMs 29240
Date Mon Mar 25 13:47:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008876.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008876hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 1.1E-59 3.9E-64 500.4 36.6 528 8-550 121-750 (768)
2 3rgz_A Protein brassinosteroid 100.0 1.5E-55 5E-60 468.9 34.8 518 7-539 94-716 (768)
3 1ziw_A TOLL-like receptor 3; i 100.0 1.6E-53 5.4E-58 449.8 43.6 525 13-545 25-627 (680)
4 3t6q_A CD180 antigen; protein- 100.0 7.7E-52 2.6E-56 431.2 37.3 516 14-545 34-565 (606)
5 3vq2_A TLR4, TOLL-like recepto 100.0 1.4E-50 4.7E-55 421.8 36.9 505 16-545 14-563 (606)
6 1ziw_A TOLL-like receptor 3; i 100.0 2.3E-49 8E-54 418.0 45.2 515 16-539 7-596 (680)
7 3t6q_A CD180 antigen; protein- 100.0 1.3E-50 4.4E-55 422.0 34.1 505 2-521 46-564 (606)
8 3j0a_A TOLL-like receptor 5; m 100.0 2.8E-49 9.6E-54 424.9 37.8 514 11-546 22-566 (844)
9 3vq2_A TLR4, TOLL-like recepto 100.0 1.4E-48 4.9E-53 406.6 32.8 495 4-521 25-562 (606)
10 2z63_A TOLL-like receptor 4, v 100.0 4.4E-46 1.5E-50 385.4 35.7 509 16-546 10-537 (570)
11 2z63_A TOLL-like receptor 4, v 100.0 9.4E-45 3.2E-49 375.4 33.9 498 4-523 21-537 (570)
12 3j0a_A TOLL-like receptor 5; m 100.0 1.5E-44 5.2E-49 388.2 34.8 500 2-521 37-564 (844)
13 2z81_A CD282 antigen, TOLL-lik 100.0 5.8E-44 2E-48 367.5 31.8 467 38-544 26-514 (549)
14 2z81_A CD282 antigen, TOLL-lik 100.0 1.2E-42 4E-47 357.8 29.3 471 4-521 19-514 (549)
15 4g8a_A TOLL-like receptor 4; l 100.0 9.4E-41 3.2E-45 350.4 35.8 496 29-545 45-585 (635)
16 4eco_A Uncharacterized protein 100.0 8.6E-42 2.9E-46 354.7 21.4 466 38-523 81-606 (636)
17 2z7x_B TOLL-like receptor 1, v 100.0 2.8E-41 9.7E-46 344.8 22.8 464 41-545 3-486 (520)
18 2z7x_B TOLL-like receptor 1, v 100.0 2.3E-40 7.7E-45 338.1 29.2 454 16-519 3-483 (520)
19 4eco_A Uncharacterized protein 100.0 2.8E-40 9.7E-45 343.3 22.3 477 13-517 81-632 (636)
20 4ecn_A Leucine-rich repeat pro 100.0 2.8E-39 9.5E-44 340.8 25.1 389 144-544 435-870 (876)
21 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1.7E-38 5.8E-43 326.8 26.1 464 35-545 28-515 (562)
22 4ecn_A Leucine-rich repeat pro 100.0 1.9E-38 6.3E-43 334.5 24.3 373 126-515 440-862 (876)
23 4g8a_A TOLL-like receptor 4; l 100.0 2.5E-37 8.5E-42 324.4 32.4 493 5-518 46-581 (635)
24 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1.5E-37 5.2E-42 319.7 25.2 461 10-521 28-514 (562)
25 3v47_A TOLL-like receptor 5B a 100.0 1.1E-35 3.9E-40 298.3 28.6 382 138-544 14-412 (455)
26 3v47_A TOLL-like receptor 5B a 100.0 1.8E-35 6.1E-40 296.9 28.7 386 42-522 14-413 (455)
27 1jl5_A Outer protein YOPM; leu 100.0 9.4E-35 3.2E-39 288.6 25.2 419 37-543 10-432 (454)
28 1jl5_A Outer protein YOPM; leu 100.0 1E-32 3.6E-37 273.9 24.5 409 11-522 9-434 (454)
29 2id5_A Lingo-1, leucine rich r 100.0 7.3E-33 2.5E-37 279.3 22.8 347 187-544 14-360 (477)
30 2id5_A Lingo-1, leucine rich r 100.0 1.8E-32 6.2E-37 276.4 24.9 349 161-523 14-362 (477)
31 1o6v_A Internalin A; bacterial 100.0 1.6E-31 5.4E-36 268.2 31.2 346 108-518 44-389 (466)
32 1o6v_A Internalin A; bacterial 100.0 2.2E-31 7.6E-36 267.1 31.1 345 12-421 45-389 (466)
33 3bz5_A Internalin-J, INLJ; leu 100.0 3.2E-31 1.1E-35 263.4 29.6 211 32-269 36-246 (457)
34 3o6n_A APL1; leucine-rich repe 100.0 2.8E-31 9.7E-36 260.3 22.7 312 183-543 44-355 (390)
35 3bz5_A Internalin-J, INLJ; leu 100.0 1.2E-30 4.2E-35 259.2 24.4 361 77-523 33-393 (457)
36 3o6n_A APL1; leucine-rich repe 100.0 1.8E-30 6.1E-35 254.6 23.9 336 109-545 44-379 (390)
37 4fmz_A Internalin; leucine ric 100.0 6.2E-30 2.1E-34 246.9 27.3 305 156-517 42-346 (347)
38 4fmz_A Internalin; leucine ric 100.0 1.8E-29 6E-34 243.7 28.2 307 34-391 40-346 (347)
39 3oja_B Anopheles plasmodium-re 100.0 3.3E-30 1.1E-34 266.4 22.8 312 183-543 50-361 (597)
40 1ogq_A PGIP-2, polygalacturona 100.0 6.9E-30 2.4E-34 241.7 19.7 259 257-549 51-313 (313)
41 3oja_B Anopheles plasmodium-re 100.0 2.9E-29 1E-33 259.3 23.9 242 109-391 50-291 (597)
42 1xku_A Decorin; proteoglycan, 100.0 9.6E-27 3.3E-31 222.6 27.9 289 14-315 32-329 (330)
43 1z7x_W Ribonuclease inhibitor; 100.0 1.2E-31 4E-36 269.7 -6.7 264 85-367 2-297 (461)
44 1z7x_W Ribonuclease inhibitor; 100.0 1.9E-31 6.7E-36 268.1 -5.6 90 34-123 24-126 (461)
45 3ogk_B Coronatine-insensitive 100.0 1.7E-30 5.9E-35 269.7 -0.6 256 6-264 66-350 (592)
46 2ft3_A Biglycan; proteoglycan, 100.0 6.1E-27 2.1E-31 224.0 22.3 291 39-365 34-331 (332)
47 1xku_A Decorin; proteoglycan, 100.0 1.5E-26 5E-31 221.3 24.8 293 38-365 31-330 (330)
48 2ft3_A Biglycan; proteoglycan, 100.0 1.2E-26 3.9E-31 222.1 23.2 290 63-389 34-331 (332)
49 1ogq_A PGIP-2, polygalacturona 99.9 8.5E-28 2.9E-32 227.3 12.3 249 38-291 50-302 (313)
50 3zyj_A Leucine-rich repeat-con 99.9 3.4E-26 1.2E-30 227.6 23.7 231 307-545 66-297 (440)
51 3zyi_A Leucine-rich repeat-con 99.9 4.6E-26 1.6E-30 227.5 22.7 208 332-546 101-309 (452)
52 3ogk_B Coronatine-insensitive 99.9 1.9E-29 6.6E-34 261.9 -2.7 399 108-514 110-548 (592)
53 2p1m_B Transport inhibitor res 99.9 2.1E-29 7.3E-34 261.7 -8.1 407 108-523 103-550 (594)
54 2z66_A Variable lymphocyte rec 99.9 3.6E-25 1.2E-29 209.3 19.6 252 259-545 10-266 (306)
55 2p1m_B Transport inhibitor res 99.9 4.9E-29 1.7E-33 259.0 -11.1 159 9-168 62-245 (594)
56 1ozn_A Reticulon 4 receptor; N 99.9 6.3E-25 2.2E-29 205.3 17.9 210 330-545 32-243 (285)
57 2z66_A Variable lymphocyte rec 99.9 3.5E-24 1.2E-28 202.5 21.5 232 38-295 28-263 (306)
58 3zyj_A Leucine-rich repeat-con 99.9 7.3E-24 2.5E-28 210.8 23.7 256 39-300 44-299 (440)
59 4fcg_A Uncharacterized protein 99.9 2.3E-24 7.8E-29 205.0 19.1 223 12-242 80-311 (328)
60 3zyi_A Leucine-rich repeat-con 99.9 8.2E-24 2.8E-28 211.2 23.9 255 39-299 55-309 (452)
61 2z80_A TOLL-like receptor 2, v 99.9 9.2E-25 3.1E-29 210.8 16.3 280 34-320 27-316 (353)
62 2z80_A TOLL-like receptor 2, v 99.9 2E-24 6.8E-29 208.5 17.9 278 61-343 30-314 (353)
63 1ozn_A Reticulon 4 receptor; N 99.9 1.8E-24 6.3E-29 202.1 16.6 224 16-245 14-238 (285)
64 4fcg_A Uncharacterized protein 99.9 6.3E-24 2.1E-28 201.9 17.5 222 37-265 80-310 (328)
65 2o6q_A Variable lymphocyte rec 99.9 7.5E-23 2.6E-27 189.3 20.1 204 332-544 18-222 (270)
66 3o53_A Protein LRIM1, AGAP0063 99.9 9.2E-25 3.2E-29 207.1 6.5 262 211-518 13-276 (317)
67 2z62_A TOLL-like receptor 4, v 99.9 7.4E-23 2.5E-27 190.3 17.6 208 330-544 28-241 (276)
68 1p9a_G Platelet glycoprotein I 99.9 1.2E-22 4E-27 189.4 18.9 180 332-545 33-213 (290)
69 3g06_A SSPH2 (leucine-rich rep 99.9 8.7E-22 3E-26 201.2 26.2 261 185-521 41-301 (622)
70 3o53_A Protein LRIM1, AGAP0063 99.9 3.1E-24 1E-28 203.5 5.5 261 185-491 11-273 (317)
71 1wwl_A Monocyte differentiatio 99.9 3.9E-24 1.3E-28 202.3 4.6 202 108-318 93-309 (312)
72 1wwl_A Monocyte differentiatio 99.9 5.8E-24 2E-28 201.2 5.4 250 255-517 42-309 (312)
73 3oja_A Leucine-rich immune mol 99.9 2E-23 6.7E-28 209.4 8.8 236 232-512 34-270 (487)
74 3oja_A Leucine-rich immune mol 99.9 2.4E-22 8.1E-27 201.5 16.5 246 279-545 33-287 (487)
75 3g06_A SSPH2 (leucine-rich rep 99.9 2.8E-21 9.6E-26 197.5 24.5 261 158-472 40-300 (622)
76 2o6q_A Variable lymphocyte rec 99.9 1.9E-20 6.5E-25 173.1 21.1 200 40-244 18-217 (270)
77 2z62_A TOLL-like receptor 4, v 99.9 6.1E-21 2.1E-25 177.3 17.8 185 332-522 54-242 (276)
78 3rfs_A Internalin B, repeat mo 99.8 3.5E-20 1.2E-24 171.4 18.1 183 352-544 39-222 (272)
79 2xwt_C Thyrotropin receptor; s 99.8 1.7E-20 5.7E-25 170.2 15.0 199 330-539 31-238 (239)
80 3rfs_A Internalin B, repeat mo 99.8 3.3E-20 1.1E-24 171.6 16.3 210 34-256 37-246 (272)
81 3m19_A Variable lymphocyte rec 99.8 8.5E-20 2.9E-24 166.8 17.5 178 332-518 16-193 (251)
82 1p9a_G Platelet glycoprotein I 99.8 2.1E-19 7.2E-24 167.4 19.6 153 9-168 6-158 (290)
83 3goz_A Leucine-rich repeat-con 99.8 3.5E-21 1.2E-25 186.1 4.5 263 237-519 3-299 (362)
84 3goz_A Leucine-rich repeat-con 99.8 4.8E-21 1.6E-25 185.2 5.1 258 214-471 4-299 (362)
85 2xwt_C Thyrotropin receptor; s 99.8 1.3E-19 4.5E-24 164.3 13.6 104 63-168 32-140 (239)
86 2ast_B S-phase kinase-associat 99.8 1.9E-20 6.6E-25 179.5 7.9 257 234-526 49-315 (336)
87 2ca6_A RAN GTPase-activating p 99.8 3E-22 1E-26 195.7 -4.8 246 29-295 23-318 (386)
88 4glp_A Monocyte differentiatio 99.8 4.6E-20 1.6E-24 174.2 10.1 229 281-539 65-306 (310)
89 2ca6_A RAN GTPase-activating p 99.8 1E-21 3.5E-26 191.9 -1.6 193 4-197 23-257 (386)
90 3m19_A Variable lymphocyte rec 99.8 8.7E-19 3E-23 160.0 17.8 180 305-494 14-193 (251)
91 1h6u_A Internalin H; cell adhe 99.8 8.3E-19 2.8E-23 165.1 17.5 194 34-245 37-230 (308)
92 4glp_A Monocyte differentiatio 99.8 1.2E-19 4E-24 171.5 11.5 205 332-540 66-285 (310)
93 2ast_B S-phase kinase-associat 99.8 1.1E-20 3.9E-25 181.1 4.4 222 40-290 49-282 (336)
94 2v70_A SLIT-2, SLIT homolog 2 99.8 2.1E-19 7.3E-24 160.1 12.0 137 409-545 34-171 (220)
95 1h6u_A Internalin H; cell adhe 99.8 1.2E-18 4.2E-23 164.0 16.6 196 8-222 36-231 (308)
96 2v9t_B SLIT homolog 2 protein 99.8 6.8E-19 2.3E-23 156.8 13.0 137 408-545 33-170 (220)
97 2xot_A Amphoterin-induced prot 99.7 1.8E-18 6.2E-23 166.8 9.5 137 407-545 64-207 (361)
98 3e6j_A Variable lymphocyte rec 99.7 1.8E-17 6.3E-22 148.6 15.0 135 408-544 41-176 (229)
99 4ay9_X Follicle-stimulating ho 99.7 1.7E-17 6E-22 159.3 15.4 241 259-514 12-256 (350)
100 4ay9_X Follicle-stimulating ho 99.7 4.5E-17 1.5E-21 156.4 17.8 240 41-289 12-255 (350)
101 2o6s_A Variable lymphocyte rec 99.7 6.6E-17 2.3E-21 143.0 15.6 159 354-525 28-186 (208)
102 2o6s_A Variable lymphocyte rec 99.7 8.3E-17 2.8E-21 142.4 13.7 132 38-169 28-159 (208)
103 1h6t_A Internalin B; cell adhe 99.7 1.4E-16 4.7E-21 148.5 15.2 171 303-518 44-214 (291)
104 1h6t_A Internalin B; cell adhe 99.7 1.8E-16 6.3E-21 147.6 14.1 173 34-222 42-214 (291)
105 2v9t_B SLIT homolog 2 protein 99.7 4.6E-16 1.6E-20 138.4 14.8 151 333-492 14-164 (220)
106 2v70_A SLIT-2, SLIT homolog 2 99.7 6E-16 2.1E-20 137.7 15.3 155 333-520 14-169 (220)
107 3sb4_A Hypothetical leucine ri 99.7 4.4E-17 1.5E-21 155.1 8.2 299 2-311 12-327 (329)
108 1w8a_A SLIT protein; signaling 99.7 4.4E-16 1.5E-20 135.4 12.1 130 381-518 11-140 (192)
109 1m9s_A Internalin B; cell inva 99.7 7.5E-16 2.6E-20 157.3 15.5 173 9-198 39-211 (605)
110 4ezg_A Putative uncharacterize 99.7 3.8E-16 1.3E-20 136.7 11.1 154 34-197 40-194 (197)
111 2wfh_A SLIT homolog 2 protein 99.7 5E-16 1.7E-20 134.9 11.7 130 411-545 14-144 (193)
112 3cvr_A Invasion plasmid antige 99.7 1.6E-15 5.5E-20 153.0 16.3 160 332-522 82-248 (571)
113 3e6j_A Variable lymphocyte rec 99.6 2.4E-15 8.2E-20 134.8 15.5 152 332-493 21-172 (229)
114 1m9s_A Internalin B; cell inva 99.6 1.5E-15 5.1E-20 155.1 15.9 172 301-493 39-210 (605)
115 4ezg_A Putative uncharacterize 99.6 5.8E-16 2E-20 135.5 10.9 154 58-221 40-194 (197)
116 1xeu_A Internalin C; cellular 99.6 5.2E-16 1.8E-20 142.2 10.9 167 332-519 21-187 (263)
117 2xot_A Amphoterin-induced prot 99.6 6.3E-16 2.1E-20 149.0 11.7 157 331-517 40-202 (361)
118 1w8a_A SLIT protein; signaling 99.6 7.1E-16 2.4E-20 134.1 9.2 174 357-543 11-186 (192)
119 3sb4_A Hypothetical leucine ri 99.6 2.5E-15 8.6E-20 142.9 13.6 102 353-486 225-327 (329)
120 3cvr_A Invasion plasmid antige 99.6 4.4E-15 1.5E-19 149.9 15.6 177 331-541 60-244 (571)
121 4fdw_A Leucine rich hypothetic 99.6 4E-14 1.4E-18 137.4 21.4 263 13-316 113-381 (401)
122 4fs7_A Uncharacterized protein 99.6 5.3E-14 1.8E-18 137.3 20.9 103 348-485 291-393 (394)
123 4fs7_A Uncharacterized protein 99.6 2.3E-13 7.8E-18 132.8 22.4 333 27-383 60-393 (394)
124 2o6r_A Variable lymphocyte rec 99.6 1.9E-14 6.5E-19 123.5 11.8 113 432-544 28-141 (177)
125 4fdw_A Leucine rich hypothetic 99.6 1.5E-13 5.2E-18 133.2 19.5 251 6-290 129-380 (401)
126 1xeu_A Internalin C; cellular 99.6 2E-14 6.9E-19 131.6 12.1 168 85-269 18-185 (263)
127 2ell_A Acidic leucine-rich nuc 99.5 2.7E-14 9.2E-19 121.4 9.7 131 38-170 24-159 (168)
128 2wfh_A SLIT homolog 2 protein 99.5 8.5E-14 2.9E-18 120.8 12.8 109 408-518 32-140 (193)
129 2je0_A Acidic leucine-rich nuc 99.5 2.4E-14 8.3E-19 119.0 8.5 129 11-142 15-148 (149)
130 2ell_A Acidic leucine-rich nuc 99.5 4.4E-14 1.5E-18 120.1 10.2 134 11-147 22-160 (168)
131 2o6r_A Variable lymphocyte rec 99.5 1.3E-13 4.4E-18 118.2 12.5 113 408-521 29-141 (177)
132 1dce_A Protein (RAB geranylger 99.5 1.2E-15 4.2E-20 154.8 -1.2 179 35-245 346-546 (567)
133 1dce_A Protein (RAB geranylger 99.5 2.6E-16 8.8E-21 159.8 -6.5 186 331-523 350-552 (567)
134 2je0_A Acidic leucine-rich nuc 99.5 3.7E-14 1.3E-18 117.9 7.6 129 36-166 15-148 (149)
135 3g39_A Variable lymphocyte rec 99.4 2.9E-13 9.9E-18 114.8 10.2 107 435-544 12-119 (170)
136 1a9n_A U2A', U2A'; complex (nu 99.4 1.9E-13 6.3E-18 117.1 8.0 106 408-518 43-154 (176)
137 4gt6_A Cell surface protein; l 99.4 1.2E-11 4E-16 120.7 20.9 318 7-341 57-389 (394)
138 2r9u_A Variable lymphocyte rec 99.4 1.1E-12 3.8E-17 111.6 10.2 107 435-544 15-122 (174)
139 4gt6_A Cell surface protein; l 99.4 7.1E-11 2.4E-15 115.1 23.6 155 151-314 56-214 (394)
140 1a9n_A U2A', U2A'; complex (nu 99.4 1.2E-12 4.3E-17 111.9 8.2 131 34-169 15-151 (176)
141 4b8c_D Glucose-repressible alc 99.3 2.6E-13 8.8E-18 142.3 4.0 140 373-522 219-359 (727)
142 4b8c_D Glucose-repressible alc 99.3 1.8E-13 6.3E-18 143.4 2.2 153 13-172 173-330 (727)
143 1ds9_A Outer arm dynein; leuci 99.3 2.9E-14 1E-18 124.7 -5.1 135 9-149 14-155 (198)
144 3g39_A Variable lymphocyte rec 99.3 1.2E-11 4.1E-16 104.8 11.1 88 432-519 30-117 (170)
145 1ds9_A Outer arm dynein; leuci 99.3 1.7E-13 5.9E-18 119.8 -1.6 139 1-147 30-185 (198)
146 2ifg_A High affinity nerve gro 99.3 8.4E-12 2.9E-16 119.6 9.6 108 436-545 12-121 (347)
147 2r9u_A Variable lymphocyte rec 99.3 3.7E-11 1.3E-15 102.1 11.3 86 432-517 33-118 (174)
148 3un9_A NLR family member X1; l 99.2 1.1E-13 3.7E-18 133.0 -5.2 143 354-496 101-255 (372)
149 4h09_A Hypothetical leucine ri 99.2 4E-09 1.4E-13 102.2 23.6 131 348-488 211-341 (379)
150 4h09_A Hypothetical leucine ri 99.2 1.2E-08 4.2E-13 98.8 25.7 302 180-514 42-343 (379)
151 3un9_A NLR family member X1; l 99.1 7.5E-13 2.6E-17 127.1 -5.5 165 352-520 70-255 (372)
152 2ifg_A High affinity nerve gro 98.9 4.1E-09 1.4E-13 100.9 10.9 89 428-517 27-116 (347)
153 2ra8_A Uncharacterized protein 98.8 3E-09 1E-13 101.1 4.5 161 347-515 165-341 (362)
154 2ra8_A Uncharacterized protein 98.7 1.2E-08 4.1E-13 96.9 6.5 162 297-491 164-341 (362)
155 1io0_A Tropomodulin; LRR prote 98.5 9.7E-09 3.3E-13 88.0 -0.3 86 432-517 65-164 (185)
156 3e4g_A ATP synthase subunit S, 98.5 1.3E-08 4.4E-13 84.6 -0.5 84 407-491 61-150 (176)
157 1io0_A Tropomodulin; LRR prote 98.5 1.4E-08 4.7E-13 87.0 -0.9 120 348-493 30-164 (185)
158 3e4g_A ATP synthase subunit S, 98.3 1.9E-07 6.4E-12 77.6 2.8 85 37-121 60-150 (176)
159 3rw6_A Nuclear RNA export fact 98.0 4.2E-06 1.5E-10 75.1 4.5 79 430-510 168-257 (267)
160 1pgv_A TMD-1, tropomodulin TMD 97.9 1.4E-06 4.9E-11 73.7 -0.9 66 451-516 93-169 (197)
161 3rw6_A Nuclear RNA export fact 97.8 2.1E-06 7.2E-11 77.1 -0.1 92 429-522 138-238 (267)
162 3rfe_A Platelet glycoprotein I 97.8 1.7E-05 5.8E-10 62.8 5.0 14 532-545 60-73 (130)
163 1pgv_A TMD-1, tropomodulin TMD 97.4 1.5E-05 5.2E-10 67.5 -0.7 61 432-492 98-169 (197)
164 3rfe_A Platelet glycoprotein I 96.2 0.0072 2.5E-07 47.6 5.8 56 436-493 12-68 (130)
165 2lz0_A Uncharacterized protein 83.4 2.5 8.6E-05 30.9 5.7 46 443-489 7-52 (100)
166 2lz0_A Uncharacterized protein 78.0 2.2 7.5E-05 31.3 3.8 49 465-514 5-53 (100)
167 3p0y_A Epidermal growth factor 26.6 66 0.0023 27.2 4.2 13 449-461 56-68 (214)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=1.1e-59 Score=500.45 Aligned_cols=528 Identities=31% Similarity=0.464 Sum_probs=394.2
Q ss_pred cccccCcccEeeCCCCCCCCcCCCCCc-cCCCCCcEEeCCCccCCCCCchh---hhhccCCcEEEcCCCcCCCccccccc
Q 008876 8 SISLLTSLEVLDLGGLVDLTGIIPPSI-GCLQNLKKLYLYGNKLSGSVPES---ISKLLKLEELHLHENRLSGTLSSSLG 83 (550)
Q Consensus 8 ~~~~~~~L~~L~l~~~~~~~~~~~~~l-~~l~~L~~L~l~~~~~~~~~~~~---~~~l~~L~~L~l~~~~~~~~~~~~~~ 83 (550)
.++++++|++|++++| .+.+..|..+ .++++|++|++++|.+++..+.. +.++++|++|++++|.+....+ +.
T Consensus 121 ~l~~l~~L~~L~Ls~n-~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~ 197 (768)
T 3rgz_A 121 SLGSCSGLKFLNVSSN-TLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD--VS 197 (768)
T ss_dssp GGGGCTTCCEEECCSS-EEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCB--CT
T ss_pred HHhCCCCCCEEECcCC-ccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCC--cc
Confidence 4444444444444442 2222333322 44445555555555444333333 3445555555555555432222 36
Q ss_pred CCcccchhhccccccCccCchhccCCCCCCEEEcccccCccccchhhcCCCCcCeEeccCccccCcCCcccCCCCCCCEE
Q 008876 84 NLKNINQLLMHTNQFTGVIPDSFTNLTNLVRLDLHCNYLNGYIPEKIGELQLLEQLDFSNNLLRGKLPPSLCNLTVISVL 163 (550)
Q Consensus 84 ~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L 163 (550)
.+++|++|++++|.+....|. +..+++|++|++++|.+....+..+..+++|++|++++|.+.+..|.. .+++|++|
T Consensus 198 ~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L 274 (768)
T 3rgz_A 198 RCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYL 274 (768)
T ss_dssp TCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC--CCTTCCEE
T ss_pred cCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc--ccCCCCEE
Confidence 778888888888888766665 888999999999999888777888889999999999988877555543 77888888
Q ss_pred EccCCcccccccCCCCCCC-CCCccEEEcCCCcccccCCCCccCCCCCcEEEcccCcccCcchh-hccCCCCCcEEEecC
Q 008876 164 YLDNNKLEGAIPFPSSPGQ-MPSLGFLRLQDNNLTGKIPPTFGYLASLRRVSLANNKLEGAIPT-SLGNLQDLTELYLNG 241 (550)
Q Consensus 164 ~l~~~~~~~~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~-~l~~~~~L~~L~l~~ 241 (550)
++++|.+.+..+ ..+.. +++|++|++++|.+....+..++.+++|++|++++|.+.+..+. .+..+++|++|++++
T Consensus 275 ~L~~n~l~~~ip--~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~ 352 (768)
T 3rgz_A 275 SLAENKFTGEIP--DFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSF 352 (768)
T ss_dssp ECCSSEEEESCC--CCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCS
T ss_pred ECcCCccCCccC--HHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcC
Confidence 888887764433 44444 47888888888887767777777788888888888877644443 367777777777777
Q ss_pred ccccCCCcccccC---------------------------CCcccEEEccCCcccCCCCCcccCCCCccEEEccCCcccC
Q 008876 242 NQLSGQIPKSISQ---------------------------LSQLIFLSISRNQIEGPLPSGMFSLQNLQTLDLSFNLLNL 294 (550)
Q Consensus 242 ~~~~~~~~~~l~~---------------------------~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 294 (550)
|.+....+..+.. +++|+.|++++|.++...+..+..+++|+.|++++|.+..
T Consensus 353 n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 432 (768)
T 3rgz_A 353 NEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSG 432 (768)
T ss_dssp SEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEES
T ss_pred CccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccC
Confidence 7665333333333 3455666666665555556666667777777777776543
Q ss_pred CccchhcccCCCCcEEEeecccccccCCccccCCCCCccEEEcccccCCCCchhhhhccccccEEEccCCeeeccCCccc
Q 008876 295 SSIPMWMAELPSLSRVYLAGCGIKGKIPEFFRTTPSPLQELDLSVNHLSGSIPAWIGSLTQLYSLNLSRNSLVSSIPETI 374 (550)
Q Consensus 295 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l 374 (550)
. .+..+..+++|+.|++++|.+.+..+..+..... |+.|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+
T Consensus 433 ~-~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~-L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~ 510 (768)
T 3rgz_A 433 T-IPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKT-LETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWI 510 (768)
T ss_dssp C-CCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTT-CCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGG
T ss_pred c-ccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCC-ceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHH
Confidence 3 5666777778888888888777666666655544 8888888888887777788888888888888888887778888
Q ss_pred cCCCCCcEEEccCCccccccccccccCCCCCCCCeEEEeccCCCCCCCCCCC----------------------------
Q 008876 375 TNLQDLVLLDLHSNKLTGSISQVFKIGQRFPDGSLTYIDLSDNGFSSGIELT---------------------------- 426 (550)
Q Consensus 375 ~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~---------------------------- 426 (550)
..+++|++|++++|++....+..+... ++|+.|++++|.+.+.++..
T Consensus 511 ~~l~~L~~L~L~~N~l~~~~p~~l~~l-----~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 585 (768)
T 3rgz_A 511 GRLENLAILKLSNNSFSGNIPAELGDC-----RSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKK 585 (768)
T ss_dssp GGCTTCCEEECCSSCCEEECCGGGGGC-----TTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCT
T ss_pred hcCCCCCEEECCCCcccCcCCHHHcCC-----CCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccc
Confidence 888888888888888876666655544 78999999988876544421
Q ss_pred -----------------------------------------CCCCcccccEEeccCCcccCcCCcccccccccceeeCCC
Q 008876 427 -----------------------------------------GGGGQTGIRFLNLSRNVLEGQIPVSVGRLRSLRSLDLSY 465 (550)
Q Consensus 427 -----------------------------------------~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~ 465 (550)
.+..+++|+.|++++|.+++.+|..+..+++|+.|+|++
T Consensus 586 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~ 665 (768)
T 3rgz_A 586 ECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGH 665 (768)
T ss_dssp TCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCS
T ss_pred cccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcC
Confidence 234467899999999999999999999999999999999
Q ss_pred CccceeCCCcCCCCCCCcEEECcCccccccCCCcccCCCcCceeecCCccccccCCCCCCCCCccccCCCCCCCCCCCCC
Q 008876 466 NKLGYVLPGSLANESSLETLKLQNNRFTGRIPSEYLKLKKLKELDLSHNLLVGEIPAGKPLSDFPESSFSGNRGLCGKPL 545 (550)
Q Consensus 466 n~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 545 (550)
|.+++.+|..+.++++|++|++++|.+++.+|..+.++++|++|++++|++++.+|.+.++..++...+.|||++|+.++
T Consensus 666 N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l 745 (768)
T 3rgz_A 666 NDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPL 745 (768)
T ss_dssp SCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSCTEEESTTS
T ss_pred CccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCchhhccCCHHHhcCCchhcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCC
Q 008876 546 TACRA 550 (550)
Q Consensus 546 ~~~~~ 550 (550)
..|.+
T Consensus 746 ~~C~~ 750 (768)
T 3rgz_A 746 PRCDP 750 (768)
T ss_dssp CCCCS
T ss_pred cCCCC
Confidence 99974
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=1.5e-55 Score=468.86 Aligned_cols=518 Identities=31% Similarity=0.435 Sum_probs=398.1
Q ss_pred ccccccCcccEeeCCCCCCCCcCCCC--CccCCCCCcEEeCCCccCCCCCchhh-hhccCCcEEEcCCCcCCCccccc--
Q 008876 7 PSISLLTSLEVLDLGGLVDLTGIIPP--SIGCLQNLKKLYLYGNKLSGSVPESI-SKLLKLEELHLHENRLSGTLSSS-- 81 (550)
Q Consensus 7 ~~~~~~~~L~~L~l~~~~~~~~~~~~--~l~~l~~L~~L~l~~~~~~~~~~~~~-~~l~~L~~L~l~~~~~~~~~~~~-- 81 (550)
..|+++++|++|++++ +.+.+.+|. .++++++|++|++++|.+.+..|..+ .++++|++|++++|.+....+..
T Consensus 94 ~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 172 (768)
T 3rgz_A 94 SGFKCSASLTSLDLSR-NSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWV 172 (768)
T ss_dssp CCCCCCTTCCEEECCS-SEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHH
T ss_pred hhhccCCCCCEEECCC-CcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhh
Confidence 5666777777777776 345555565 67777777777777776665555544 56777777777777766444544
Q ss_pred -ccCCcccchhhccccccCccCchhccCCCCCCEEEcccccCccccchhhcCCCCcCeEeccCccccCcCCcccCCCCCC
Q 008876 82 -LGNLKNINQLLMHTNQFTGVIPDSFTNLTNLVRLDLHCNYLNGYIPEKIGELQLLEQLDFSNNLLRGKLPPSLCNLTVI 160 (550)
Q Consensus 82 -~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L 160 (550)
+.++++|++|++++|.+.+..+ +..+++|++|++++|.+....+. +..+++|++|++++|.+.+..+..+..+++|
T Consensus 173 ~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L 249 (768)
T 3rgz_A 173 LSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTEL 249 (768)
T ss_dssp HTTCCTTCCEEECCSSEEESCCB--CTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSC
T ss_pred hhccCCCCCEEECCCCcccccCC--cccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHHhcCCCC
Confidence 6677777777777777764433 36788888999988888765555 8889999999999998887778888999999
Q ss_pred CEEEccCCcccccccCCCCCCCCCCccEEEcCCCcccccCCCCccCC-CCCcEEEcccCcccCcchhhccCCCCCcEEEe
Q 008876 161 SVLYLDNNKLEGAIPFPSSPGQMPSLGFLRLQDNNLTGKIPPTFGYL-ASLRRVSLANNKLEGAIPTSLGNLQDLTELYL 239 (550)
Q Consensus 161 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~-~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l 239 (550)
++|++++|.+.+..+. ..+++|++|++++|.+....+..+... ++|++|++++|.+....+..++.+++|++|++
T Consensus 250 ~~L~Ls~n~l~~~~~~----~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 325 (768)
T 3rgz_A 250 KLLNISSNQFVGPIPP----LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLAL 325 (768)
T ss_dssp CEEECCSSCCEESCCC----CCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEEC
T ss_pred CEEECCCCcccCccCc----cccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEEC
Confidence 9999999988765432 278999999999999887777777664 99999999999998888889999999999999
Q ss_pred cCccccCCCcc-cccCCCcccEEEccCCcccCCCCCcccCCC-CccEEEccCCcccCC----------------------
Q 008876 240 NGNQLSGQIPK-SISQLSQLIFLSISRNQIEGPLPSGMFSLQ-NLQTLDLSFNLLNLS---------------------- 295 (550)
Q Consensus 240 ~~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~---------------------- 295 (550)
++|.+....+. .+..+++|++|++++|.+...++..+..++ +|+.|++++|.+...
T Consensus 326 ~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~ 405 (768)
T 3rgz_A 326 SSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNG 405 (768)
T ss_dssp CSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSE
T ss_pred CCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCc
Confidence 99998744444 488999999999999998766666665554 666666665543211
Q ss_pred ---ccchhcccCCCCcEEEeecccccccCCccccCCCCCccEEEcccccCCCCchhhhhccccccEEEccCCeeeccCCc
Q 008876 296 ---SIPMWMAELPSLSRVYLAGCGIKGKIPEFFRTTPSPLQELDLSVNHLSGSIPAWIGSLTQLYSLNLSRNSLVSSIPE 372 (550)
Q Consensus 296 ---~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 372 (550)
.++..+..+++|+.|++++|.+.+..+..+..... |+.|++++|.+.+..+..+..+++|+.|++++|.+.+..+.
T Consensus 406 l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~-L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~ 484 (768)
T 3rgz_A 406 FTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSK-LRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPS 484 (768)
T ss_dssp EEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTT-CCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCG
T ss_pred cccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCC-CCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCH
Confidence 23445666777777777777776666666655544 78888888877777777777788888888888887777777
Q ss_pred cccCCCCCcEEEccCCccccccccccccCCCCCCCCeEEEeccCCCCCCCCCCCCCCCcccccEEeccCCcccCcCCcc-
Q 008876 373 TITNLQDLVLLDLHSNKLTGSISQVFKIGQRFPDGSLTYIDLSDNGFSSGIELTGGGGQTGIRFLNLSRNVLEGQIPVS- 451 (550)
Q Consensus 373 ~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~- 451 (550)
.+..+++|++|++++|+++...+..+... ++|++|++++|.+.+.++. .+..+++|++|++++|.+++.+|..
T Consensus 485 ~l~~l~~L~~L~L~~N~l~~~~p~~~~~l-----~~L~~L~L~~N~l~~~~p~-~l~~l~~L~~L~Ls~N~l~g~ip~~~ 558 (768)
T 3rgz_A 485 GLSNCTNLNWISLSNNRLTGEIPKWIGRL-----ENLAILKLSNNSFSGNIPA-ELGDCRSLIWLDLNTNLFNGTIPAAM 558 (768)
T ss_dssp GGGGCTTCCEEECCSSCCCSCCCGGGGGC-----TTCCEEECCSSCCEEECCG-GGGGCTTCCEEECCSSEEESBCCGGG
T ss_pred HHhcCCCCCEEEccCCccCCcCChHHhcC-----CCCCEEECCCCcccCcCCH-HHcCCCCCCEEECCCCccCCcCChHH
Confidence 77788888888888888776666555543 6788888888888765554 5677888888888888877555443
Q ss_pred ---------------------------------------------------------------------cccccccceee
Q 008876 452 ---------------------------------------------------------------------VGRLRSLRSLD 462 (550)
Q Consensus 452 ---------------------------------------------------------------------l~~l~~L~~L~ 462 (550)
+..+++|+.|+
T Consensus 559 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~Ld 638 (768)
T 3rgz_A 559 FKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLD 638 (768)
T ss_dssp GTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEE
T ss_pred hcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEE
Confidence 23356788899
Q ss_pred CCCCccceeCCCcCCCCCCCcEEECcCccccccCCCcccCCCcCceeecCCccccccCCCCCC-CCCccccCCCCCCC
Q 008876 463 LSYNKLGYVLPGSLANESSLETLKLQNNRFTGRIPSEYLKLKKLKELDLSHNLLVGEIPAGKP-LSDFPESSFSGNRG 539 (550)
Q Consensus 463 l~~n~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~-~~~~~~l~~~~~~~ 539 (550)
+++|++++.+|..+.++++|++|++++|.+++.+|..+.++++|+.|++++|.+++.+|.... +++++++++++|+.
T Consensus 639 Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l 716 (768)
T 3rgz_A 639 MSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNL 716 (768)
T ss_dssp CCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEE
T ss_pred CcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcc
Confidence 999999888899999999999999999999999999999999999999999999999998755 78899999999864
No 3
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=1.6e-53 Score=449.84 Aligned_cols=525 Identities=23% Similarity=0.215 Sum_probs=327.1
Q ss_pred CcccEeeCCCCCCCCcCCCCCccCCCCCcEEeCCCccCCCCCchhhhhccCCcEEEcCCCcCCCcccccccCCcccchhh
Q 008876 13 TSLEVLDLGGLVDLTGIIPPSIGCLQNLKKLYLYGNKLSGSVPESISKLLKLEELHLHENRLSGTLSSSLGNLKNINQLL 92 (550)
Q Consensus 13 ~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 92 (550)
+++++|++++ +.+.+..+..+.++++|++|+++++.+++..|..|.++++|++|++++|.+....+..|..+++|++|+
T Consensus 25 ~~l~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~ 103 (680)
T 1ziw_A 25 TNITVLNLTH-NQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELH 103 (680)
T ss_dssp TTCSEEECCS-SCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEE
T ss_pred CCCcEEECCC-CCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEE
Confidence 4555555555 233333333455555555555555555544455555555555555555555433333455555555555
Q ss_pred ccccccCccCchhccCCCCCCEEEcccccCccccchhhcCCCCcCeEeccCccccCcCCccc--CCCCCCCEEEccCCcc
Q 008876 93 MHTNQFTGVIPDSFTNLTNLVRLDLHCNYLNGYIPEKIGELQLLEQLDFSNNLLRGKLPPSL--CNLTVISVLYLDNNKL 170 (550)
Q Consensus 93 l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l--~~~~~L~~L~l~~~~~ 170 (550)
+++|.+....+.+|.++++|++|++++|.+....+..+..+++|++|++++|.+.+..+..+ ..+++|+.|++++|.+
T Consensus 104 L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l 183 (680)
T 1ziw_A 104 LMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQI 183 (680)
T ss_dssp CCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCC
T ss_pred CCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcc
Confidence 55555554444445555555555555555544444445555555555555554443322222 1234455555554443
Q ss_pred ccccc-------------------------------------------------CCCCCCCCC--CccEEEcCCCccccc
Q 008876 171 EGAIP-------------------------------------------------FPSSPGQMP--SLGFLRLQDNNLTGK 199 (550)
Q Consensus 171 ~~~~~-------------------------------------------------~~~~~~~~~--~L~~L~l~~~~~~~~ 199 (550)
.+..+ .+..+..++ +|+.|++++|.+...
T Consensus 184 ~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~ 263 (680)
T 1ziw_A 184 KEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVV 263 (680)
T ss_dssp CCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEE
T ss_pred cccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCcc
Confidence 32211 012233332 366666666655554
Q ss_pred CCCCccCCCCCcEEEcccCcccCcchhhccCCCCCcEEEecCccccC---------CCcccccCCCcccEEEccCCcccC
Q 008876 200 IPPTFGYLASLRRVSLANNKLEGAIPTSLGNLQDLTELYLNGNQLSG---------QIPKSISQLSQLIFLSISRNQIEG 270 (550)
Q Consensus 200 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~---------~~~~~l~~~~~L~~L~l~~~~~~~ 270 (550)
.+..++.+++|++|++++|.+....+..+..+++|++|+++++.... .....+..+++|+.|++++|.+..
T Consensus 264 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~ 343 (680)
T 1ziw_A 264 GNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPG 343 (680)
T ss_dssp CTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCC
T ss_pred CcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCC
Confidence 45555556666666666666555555555666666666665442210 011134556666677776666665
Q ss_pred CCCCcccCCCCccEEEccCCcccCCccchh-cc--cCCCCcEEEeecccccccCCccccCCCCCccEEEcccccCCCCc-
Q 008876 271 PLPSGMFSLQNLQTLDLSFNLLNLSSIPMW-MA--ELPSLSRVYLAGCGIKGKIPEFFRTTPSPLQELDLSVNHLSGSI- 346 (550)
Q Consensus 271 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~- 346 (550)
..+..+..+++|++|++++|.+....++.. +. ..++|+.|++++|.+....+..+..... |+.|++++|.+.+..
T Consensus 344 ~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~-L~~L~L~~N~l~~~~~ 422 (680)
T 1ziw_A 344 IKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGH-LEVLDLGLNEIGQELT 422 (680)
T ss_dssp CCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTT-CCEEECCSSCCEEECC
T ss_pred CChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCC-CCEEeCCCCcCccccC
Confidence 555556666677777776664333222211 11 1246777777777766655555544444 888888887776433
Q ss_pred hhhhhccccccEEEccCCeeeccCCccccCCCCCcEEEccCCcccccc--ccccccCCCCCCCCeEEEeccCCCCCCCCC
Q 008876 347 PAWIGSLTQLYSLNLSRNSLVSSIPETITNLQDLVLLDLHSNKLTGSI--SQVFKIGQRFPDGSLTYIDLSDNGFSSGIE 424 (550)
Q Consensus 347 ~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~--~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 424 (550)
...+..+++|+.+++++|.+....+..+..+++|++|++++|.+...+ +..+.. .++|++|++++|.+.+ ++
T Consensus 423 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~-----l~~L~~L~Ls~N~l~~-i~ 496 (680)
T 1ziw_A 423 GQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQP-----LRNLTILDLSNNNIAN-IN 496 (680)
T ss_dssp SGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTT-----CTTCCEEECCSSCCCC-CC
T ss_pred cccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCccccc-----CCCCCEEECCCCCCCc-CC
Confidence 356677778888888888877776777777888888888887765322 222322 2789999999999875 44
Q ss_pred CCCCCCcccccEEeccCCcccCcCC--------cccccccccceeeCCCCccceeCCCcCCCCCCCcEEECcCccccccC
Q 008876 425 LTGGGGQTGIRFLNLSRNVLEGQIP--------VSVGRLRSLRSLDLSYNKLGYVLPGSLANESSLETLKLQNNRFTGRI 496 (550)
Q Consensus 425 ~~~~~~~~~L~~L~l~~~~i~~~~~--------~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 496 (550)
...+..+++|++|++++|.+++... ..+.++++|+.|++++|.++.+.+..|.++++|++|++++|.++...
T Consensus 497 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~ 576 (680)
T 1ziw_A 497 DDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLP 576 (680)
T ss_dssp TTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred hhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCC
Confidence 4568889999999999999885422 23788999999999999999776677999999999999999999766
Q ss_pred CCcccCCCcCceeecCCccccccCCCCC--CCCCccccCCCCCCCCCCCCC
Q 008876 497 PSEYLKLKKLKELDLSHNLLVGEIPAGK--PLSDFPESSFSGNRGLCGKPL 545 (550)
Q Consensus 497 ~~~~~~l~~L~~L~l~~n~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~~ 545 (550)
+..|..+++|+.|++++|.+++..|..+ .++++++++++||||.|+|++
T Consensus 577 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~ 627 (680)
T 1ziw_A 577 ASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCES 627 (680)
T ss_dssp TTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCCC
T ss_pred HhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCcc
Confidence 6678899999999999999987666544 468899999999999999985
No 4
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=7.7e-52 Score=431.24 Aligned_cols=516 Identities=22% Similarity=0.203 Sum_probs=360.6
Q ss_pred cccEeeCCCCCCCCcCCCCCccCCCCCcEEeCCCccCCCCCchhhhhccCCcEEEcCCCcCCCcccccccCCcccchhhc
Q 008876 14 SLEVLDLGGLVDLTGIIPPSIGCLQNLKKLYLYGNKLSGSVPESISKLLKLEELHLHENRLSGTLSSSLGNLKNINQLLM 93 (550)
Q Consensus 14 ~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 93 (550)
++++|++++ +.+.+..|..|.++++|++|++++|.++...|..|.++++|++|++++|.+....+..+..+++|++|++
T Consensus 34 ~l~~L~Ls~-n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 112 (606)
T 3t6q_A 34 STECLEFSF-NVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFF 112 (606)
T ss_dssp TCCEEECTT-CCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEEC
T ss_pred cCcEEEccC-CccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeec
Confidence 456666655 3444444555566666666666666555455555556666666666665555444555555666666666
Q ss_pred cccccCccCchhccCCCCCCEEEcccccCccccchhhcCCCCcCeEeccCccccCcCCcccCCCCCCC--EEEccCCccc
Q 008876 94 HTNQFTGVIPDSFTNLTNLVRLDLHCNYLNGYIPEKIGELQLLEQLDFSNNLLRGKLPPSLCNLTVIS--VLYLDNNKLE 171 (550)
Q Consensus 94 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~--~L~l~~~~~~ 171 (550)
++|.+....+..+..+++|++|++++|.+.......+..+++|++|++++|.+....+..+..+++|+ .|++++|.+.
T Consensus 113 ~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~ 192 (606)
T 3t6q_A 113 IQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIA 192 (606)
T ss_dssp TTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCC
T ss_pred cccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccC
Confidence 66655544445555556666666666555543333333355666666666555544444455555555 5555555554
Q ss_pred ccccCCCCCCCCCCccEEEcCCCcccccCCCCccCCCCC--cEEEcccC---cccCcchhhccCCC--CCcEEEecCccc
Q 008876 172 GAIPFPSSPGQMPSLGFLRLQDNNLTGKIPPTFGYLASL--RRVSLANN---KLEGAIPTSLGNLQ--DLTELYLNGNQL 244 (550)
Q Consensus 172 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L--~~L~l~~~---~~~~~~~~~l~~~~--~L~~L~l~~~~~ 244 (550)
+..+ .. ....+|+.|+++++.... ..+..+.++ +.+.+... .........+..+. +|++++++++.+
T Consensus 193 ~~~~--~~-~~~~~L~~L~l~~~~~~~---~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l 266 (606)
T 3t6q_A 193 GIEP--GA-FDSAVFQSLNFGGTQNLL---VIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYF 266 (606)
T ss_dssp EECT--TT-TTTCEEEEEECTTCSCHH---HHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCC
T ss_pred ccCh--hH-hhhccccccccCCchhHH---HHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCcc
Confidence 3322 11 222455555555553111 111111111 12221111 00111122222222 789999999998
Q ss_pred cCCCcccccCCCcccEEEccCCcccCCCCCcccCCCCccEEEccCCcccCCccchhcccCCCCcEEEeecccccccCCcc
Q 008876 245 SGQIPKSISQLSQLIFLSISRNQIEGPLPSGMFSLQNLQTLDLSFNLLNLSSIPMWMAELPSLSRVYLAGCGIKGKIPEF 324 (550)
Q Consensus 245 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 324 (550)
....+..+..+++|+.|++++|.++ .++..+..+++|++|++++|.+... .+..+..+++|+.|++++|.+....+..
T Consensus 267 ~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~~~~~~~~~ 344 (606)
T 3t6q_A 267 FNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENL-CQISASNFPSLTHLSIKGNTKRLELGTG 344 (606)
T ss_dssp SSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBG-GGGCGGGCTTCSEEECCSCSSCCBCCSS
T ss_pred CccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcC-chhhhhccCcCCEEECCCCCcccccchh
Confidence 8777777889999999999999988 6777788899999999999875533 3567788999999999999877555554
Q ss_pred ccCCCCCccEEEcccccCCCCc--hhhhhccccccEEEccCCeeeccCCccccCCCCCcEEEccCCccccccccc-cccC
Q 008876 325 FRTTPSPLQELDLSVNHLSGSI--PAWIGSLTQLYSLNLSRNSLVSSIPETITNLQDLVLLDLHSNKLTGSISQV-FKIG 401 (550)
Q Consensus 325 ~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~-~~~~ 401 (550)
.....++|++|++++|.+.... +..+..+++|+.|++++|.+....+..+..+++|++|++++|++....... +...
T Consensus 345 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l 424 (606)
T 3t6q_A 345 CLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNL 424 (606)
T ss_dssp TTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTC
T ss_pred hhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCc
Confidence 3334455999999999988655 567888999999999999998888888999999999999999987654432 3322
Q ss_pred CCCCCCCeEEEeccCCCCCCCCCCCCCCCcccccEEeccCCcccCc---CCcccccccccceeeCCCCccceeCCCcCCC
Q 008876 402 QRFPDGSLTYIDLSDNGFSSGIELTGGGGQTGIRFLNLSRNVLEGQ---IPVSVGRLRSLRSLDLSYNKLGYVLPGSLAN 478 (550)
Q Consensus 402 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~---~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~ 478 (550)
++|++|++++|.+.+..+ ..+..+++|++|++++|.+++. .+..+..+++|+.|++++|.+++..|..+.+
T Consensus 425 -----~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 498 (606)
T 3t6q_A 425 -----HLLKVLNLSHSLLDISSE-QLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTS 498 (606)
T ss_dssp -----TTCCEEECTTCCCBTTCT-TTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTT
T ss_pred -----ccCCEEECCCCccCCcCH-HHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhcc
Confidence 789999999999876444 3678899999999999999763 3357899999999999999999999999999
Q ss_pred CCCCcEEECcCccccccCCCcccCCCcCceeecCCccccccCCCCC-CCCCccccCCCCCCCCCCCCC
Q 008876 479 ESSLETLKLQNNRFTGRIPSEYLKLKKLKELDLSHNLLVGEIPAGK-PLSDFPESSFSGNRGLCGKPL 545 (550)
Q Consensus 479 l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~ 545 (550)
+++|++|++++|.+++..|..+.++++| .|++++|.+++..|..+ .++++++++++||||.|+|+.
T Consensus 499 l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~ 565 (606)
T 3t6q_A 499 LKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCSN 565 (606)
T ss_dssp CTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGGG
T ss_pred ccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCCc
Confidence 9999999999999999999999999999 99999999998777653 378899999999999999984
No 5
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=1.4e-50 Score=421.83 Aligned_cols=505 Identities=22% Similarity=0.194 Sum_probs=351.0
Q ss_pred cEeeCCCCCCCCcCCCCCccCCCCCcEEeCCCccCCCCCchhhhhccCCcEEEcCCCcCCCcccccccCCcccchhhccc
Q 008876 16 EVLDLGGLVDLTGIIPPSIGCLQNLKKLYLYGNKLSGSVPESISKLLKLEELHLHENRLSGTLSSSLGNLKNINQLLMHT 95 (550)
Q Consensus 16 ~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 95 (550)
++++.++ ..+. .+|..+. +++++|+++++.+++..+..|.++++|++|++++|.+....+..|.++++|++|++++
T Consensus 14 ~~~~c~~-~~l~-~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~ 89 (606)
T 3vq2_A 14 ITYQCMD-QKLS-KVPDDIP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTG 89 (606)
T ss_dssp TEEECTT-SCCS-SCCTTSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTT
T ss_pred CceEccC-CCcc-cCCCCCC--CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCC
Confidence 3455554 2222 3444332 4556666666655544444555566666666666555544455555566666666666
Q ss_pred cccCccCchhccCCCCCCEEEcccccCccccchhhcCCCCcCeEeccCccccC-cCCcccCCCCCCCEEEccCCcccccc
Q 008876 96 NQFTGVIPDSFTNLTNLVRLDLHCNYLNGYIPEKIGELQLLEQLDFSNNLLRG-KLPPSLCNLTVISVLYLDNNKLEGAI 174 (550)
Q Consensus 96 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-~~~~~l~~~~~L~~L~l~~~~~~~~~ 174 (550)
|.+....|.+|.++++|++|++++|.+....+..+..+++|++|++++|.+.. ..|..+.++++|++|++++|.+.+..
T Consensus 90 n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~ 169 (606)
T 3vq2_A 90 NPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTIT 169 (606)
T ss_dssp CCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEEC
T ss_pred CcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecC
Confidence 65555555555566666666666665554444455556666666666655543 33555556666666666665554322
Q ss_pred cCCCCCCCCCCc----cEEEcCCCcccccCCCCccCCCCCcEEEcccCccc-CcchhhccCCCCCcEEEe----------
Q 008876 175 PFPSSPGQMPSL----GFLRLQDNNLTGKIPPTFGYLASLRRVSLANNKLE-GAIPTSLGNLQDLTELYL---------- 239 (550)
Q Consensus 175 ~~~~~~~~~~~L----~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~~~~~~l~~~~~L~~L~l---------- 239 (550)
+ ..++.+.+| .+++++++.+....+..+... +|++|++++|.+. ...+..+..+++++.+++
T Consensus 170 ~--~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~ 246 (606)
T 3vq2_A 170 V--NDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERN 246 (606)
T ss_dssp T--TTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCC
T ss_pred h--hhhhhhhccccccceeeccCCCcceeCcccccCc-eeeeeeccCCccchhHHHHHhccccccccccccccccccCCc
Confidence 1 223333222 256666665554433333332 5666666655543 223334444444444443
Q ss_pred -----------------------cCccccCCCcccccCCCcccEEEccCCcccCCCCCcccCCCCccEEEccCCcccCCc
Q 008876 240 -----------------------NGNQLSGQIPKSISQLSQLIFLSISRNQIEGPLPSGMFSLQNLQTLDLSFNLLNLSS 296 (550)
Q Consensus 240 -----------------------~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 296 (550)
..+.+....+. +..+++|+.|+++++.+. .++ .+..+++|+.|++++|.+ ..
T Consensus 247 l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~-~l~-~l~~~~~L~~L~l~~n~l--~~ 321 (606)
T 3vq2_A 247 LEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIK-YLE-DVPKHFKWQSLSIIRCQL--KQ 321 (606)
T ss_dssp CSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCCC-CCC-CCCTTCCCSEEEEESCCC--SS
T ss_pred ccccChHHhhhhhhccHhheeccccccccccccc-cccCCCCCEEEecCccch-hhh-hccccccCCEEEcccccC--cc
Confidence 33344433333 677899999999999987 444 677889999999999976 44
Q ss_pred cchhcccCCCCcEEEeecccccccCCccccCCCCCccEEEcccccCCCC--chhhhhccccccEEEccCCeeeccCCccc
Q 008876 297 IPMWMAELPSLSRVYLAGCGIKGKIPEFFRTTPSPLQELDLSVNHLSGS--IPAWIGSLTQLYSLNLSRNSLVSSIPETI 374 (550)
Q Consensus 297 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~l 374 (550)
++. + .+++|+.|++++|...... .+. ..++|+.|++++|.+... .+..+..+++|+.|++++|.+.... ..+
T Consensus 322 lp~-~-~l~~L~~L~l~~n~~~~~~--~~~-~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~-~~~ 395 (606)
T 3vq2_A 322 FPT-L-DLPFLKSLTLTMNKGSISF--KKV-ALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMS-ANF 395 (606)
T ss_dssp CCC-C-CCSSCCEEEEESCSSCEEC--CCC-CCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEEC-CCC
T ss_pred ccc-C-CCCccceeeccCCcCccch--hhc-cCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccch-hhc
Confidence 553 3 8999999999999544333 233 344599999999998755 3677889999999999999988654 778
Q ss_pred cCCCCCcEEEccCCccccccc-cccccCCCCCCCCeEEEeccCCCCCCCCCCCCCCCcccccEEeccCCcccC-cCCccc
Q 008876 375 TNLQDLVLLDLHSNKLTGSIS-QVFKIGQRFPDGSLTYIDLSDNGFSSGIELTGGGGQTGIRFLNLSRNVLEG-QIPVSV 452 (550)
Q Consensus 375 ~~~~~L~~L~l~~~~i~~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~-~~~~~l 452 (550)
..+++|++|++++|++....+ ..+... ++|++|++++|.+.+..+. .+..+++|++|++++|.+++ ..+..+
T Consensus 396 ~~l~~L~~L~l~~n~l~~~~~~~~~~~l-----~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~ 469 (606)
T 3vq2_A 396 MGLEELQHLDFQHSTLKRVTEFSAFLSL-----EKLLYLDISYTNTKIDFDG-IFLGLTSLNTLKMAGNSFKDNTLSNVF 469 (606)
T ss_dssp TTCTTCCEEECTTSEEESTTTTTTTTTC-----TTCCEEECTTSCCEECCTT-TTTTCTTCCEEECTTCEEGGGEECSCC
T ss_pred cCCCCCCeeECCCCccCCccChhhhhcc-----ccCCEEECcCCCCCccchh-hhcCCCCCCEEECCCCcCCCcchHHhh
Confidence 899999999999999987655 344333 7999999999998775443 67889999999999999987 478889
Q ss_pred ccccccceeeCCCCccceeCCCcCCCCCCCcEEECcCccccccCCCcccCCCcCceeecCCccccccCCCCCC-CC-Ccc
Q 008876 453 GRLRSLRSLDLSYNKLGYVLPGSLANESSLETLKLQNNRFTGRIPSEYLKLKKLKELDLSHNLLVGEIPAGKP-LS-DFP 530 (550)
Q Consensus 453 ~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~-~~-~~~ 530 (550)
..+++|++|++++|.+++..|..+.++++|++|++++|.+++..|..+..+++|++|++++|.+. .+|.... ++ .++
T Consensus 470 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~ 548 (606)
T 3vq2_A 470 ANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLA 548 (606)
T ss_dssp TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCC
T ss_pred ccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCc
Confidence 99999999999999999999999999999999999999999888999999999999999999997 5776544 55 499
Q ss_pred ccCCCCCCCCCCCCC
Q 008876 531 ESSFSGNRGLCGKPL 545 (550)
Q Consensus 531 ~l~~~~~~~~~~~~~ 545 (550)
++++++|||.|+|++
T Consensus 549 ~l~l~~N~~~c~c~~ 563 (606)
T 3vq2_A 549 FFNLTNNSVACICEH 563 (606)
T ss_dssp EEECCSCCCCCSSTT
T ss_pred EEEccCCCcccCCcc
Confidence 999999999999986
No 6
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=2.3e-49 Score=418.02 Aligned_cols=515 Identities=23% Similarity=0.223 Sum_probs=368.5
Q ss_pred cEeeCCCCCCCCcCCCCCccCCCCCcEEeCCCccCCCCCchhhhhccCCcEEEcCCCcCCCcccccccCCcccchhhccc
Q 008876 16 EVLDLGGLVDLTGIIPPSIGCLQNLKKLYLYGNKLSGSVPESISKLLKLEELHLHENRLSGTLSSSLGNLKNINQLLMHT 95 (550)
Q Consensus 16 ~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 95 (550)
+.++.++ ..+. .+|..+. +++++|+++++.+++..+..|.++++|++|++++|.+....+..+.++++|++|++++
T Consensus 7 ~~~~cs~-~~L~-~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 82 (680)
T 1ziw_A 7 EVADCSH-LKLT-QVPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQH 82 (680)
T ss_dssp SEEECCS-SCCS-SCCSCSC--TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCS
T ss_pred CeeECCC-CCcc-ccccccC--CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCC
Confidence 5677877 3433 5776664 7899999999999977778899999999999999999877888899999999999999
Q ss_pred cccCccCchhccCCCCCCEEEcccccCccccchhhcCCCCcCeEeccCccccCcCCcccCCCCCCCEEEccCCccccccc
Q 008876 96 NQFTGVIPDSFTNLTNLVRLDLHCNYLNGYIPEKIGELQLLEQLDFSNNLLRGKLPPSLCNLTVISVLYLDNNKLEGAIP 175 (550)
Q Consensus 96 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 175 (550)
|.+....+.+|.++++|++|++++|.+..+.+..|..+++|++|++++|.+....+..+.++++|++|++++|.+.+..+
T Consensus 83 n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 162 (680)
T 1ziw_A 83 NELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKS 162 (680)
T ss_dssp SCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCH
T ss_pred CccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCH
Confidence 99986666679999999999999999987777889999999999999999987788889999999999999998765432
Q ss_pred CCCCCCCCCCccEEEcCCCcccccCCCCccCC---------------------------CCCcEEEcccCcccCcchhhc
Q 008876 176 FPSSPGQMPSLGFLRLQDNNLTGKIPPTFGYL---------------------------ASLRRVSLANNKLEGAIPTSL 228 (550)
Q Consensus 176 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~---------------------------~~L~~L~l~~~~~~~~~~~~l 228 (550)
.......+++|++|++++|.+....+..+..+ ++|++|+++++.+....+..+
T Consensus 163 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~ 242 (680)
T 1ziw_A 163 EELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTF 242 (680)
T ss_dssp HHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTT
T ss_pred HHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHh
Confidence 11112345778888888877665544443322 344555555555554444445
Q ss_pred cCCC--CCcEEEecCccccCCCcccccCCCcccEEEccCCcccCCCCCcccCCCCccEEEccCCcccC----Cccch---
Q 008876 229 GNLQ--DLTELYLNGNQLSGQIPKSISQLSQLIFLSISRNQIEGPLPSGMFSLQNLQTLDLSFNLLNL----SSIPM--- 299 (550)
Q Consensus 229 ~~~~--~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~----~~~~~--- 299 (550)
..++ +|++|++++|.+....+..+..+++|+.|++++|.+....+..+..+++|+.|+++++.... ..++.
T Consensus 243 ~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~ 322 (680)
T 1ziw_A 243 LGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDD 322 (680)
T ss_dssp GGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECT
T ss_pred hccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccCh
Confidence 4443 26666666666554444555556666666666665554444444445555555554432110 01111
Q ss_pred -hcccCCCCcEEEeecccccccCCccccCCC---------------------------CCccEEEcccccCCCCchhhhh
Q 008876 300 -WMAELPSLSRVYLAGCGIKGKIPEFFRTTP---------------------------SPLQELDLSVNHLSGSIPAWIG 351 (550)
Q Consensus 300 -~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~---------------------------~~L~~L~l~~~~~~~~~~~~~~ 351 (550)
.+..+++|+.|++++|.+.+..+..+.... .+|+.|++++|++.+..+..+.
T Consensus 323 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~ 402 (680)
T 1ziw_A 323 FSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFS 402 (680)
T ss_dssp TTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTT
T ss_pred hhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhh
Confidence 233344444444444444333222222211 2466667777777666666777
Q ss_pred ccccccEEEccCCeeecc-CCccccCCCCCcEEEccCCccccccccccccCCCCCCCCeEEEeccCCCCCCC-CCCCCCC
Q 008876 352 SLTQLYSLNLSRNSLVSS-IPETITNLQDLVLLDLHSNKLTGSISQVFKIGQRFPDGSLTYIDLSDNGFSSG-IELTGGG 429 (550)
Q Consensus 352 ~~~~L~~L~l~~~~~~~~-~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~ 429 (550)
.+++|+.|++++|.+... ....+..+++|++|++++|++.......+... ++|+.|++++|.+... .....+.
T Consensus 403 ~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~-----~~L~~L~l~~n~l~~~~~~p~~~~ 477 (680)
T 1ziw_A 403 WLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALV-----PSLQRLMLRRVALKNVDSSPSPFQ 477 (680)
T ss_dssp TCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTC-----TTCCEEECTTSCCBCTTCSSCTTT
T ss_pred CCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcC-----cccccchhccccccccccCCcccc
Confidence 788888888888887653 34567778888888888888776665555533 7888999988887532 2234678
Q ss_pred CcccccEEeccCCcccCcCCcccccccccceeeCCCCccceeCC--------CcCCCCCCCcEEECcCccccccCCCccc
Q 008876 430 GQTGIRFLNLSRNVLEGQIPVSVGRLRSLRSLDLSYNKLGYVLP--------GSLANESSLETLKLQNNRFTGRIPSEYL 501 (550)
Q Consensus 430 ~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~--------~~l~~l~~L~~L~l~~~~~~~~~~~~~~ 501 (550)
.+++|++|++++|.+++..+..+.++++|++|++++|+++...+ ..+.++++|++|++++|.+....+..|.
T Consensus 478 ~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~ 557 (680)
T 1ziw_A 478 PLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFK 557 (680)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred cCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcc
Confidence 89999999999999998888889999999999999999886532 2367889999999999999955445689
Q ss_pred CCCcCceeecCCccccccCCCCC-CCCCccccCCCCCCC
Q 008876 502 KLKKLKELDLSHNLLVGEIPAGK-PLSDFPESSFSGNRG 539 (550)
Q Consensus 502 ~l~~L~~L~l~~n~~~~~~~~~~-~~~~~~~l~~~~~~~ 539 (550)
++++|+.|++++|.+++..+..+ .+++++++++++|..
T Consensus 558 ~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l 596 (680)
T 1ziw_A 558 DLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLI 596 (680)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCC
T ss_pred cccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcC
Confidence 99999999999999985444433 478999999999953
No 7
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=1.3e-50 Score=422.02 Aligned_cols=505 Identities=22% Similarity=0.189 Sum_probs=400.8
Q ss_pred CCCCCccccccCcccEeeCCCCCCCCcCCCCCccCCCCCcEEeCCCccCCCCCchhhhhccCCcEEEcCCCcCCCccccc
Q 008876 2 KGSLSPSISLLTSLEVLDLGGLVDLTGIIPPSIGCLQNLKKLYLYGNKLSGSVPESISKLLKLEELHLHENRLSGTLSSS 81 (550)
Q Consensus 2 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~ 81 (550)
++..|.+|+++++|++|++++ +.+.+..|..|+++++|++|++++|.++...|..|.++++|++|++++|.+....+..
T Consensus 46 ~~~~~~~~~~l~~L~~L~Ls~-n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~ 124 (606)
T 3t6q_A 46 PTIQNTTFSRLINLTFLDLTR-CQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIP 124 (606)
T ss_dssp SEECTTTSTTCTTCSEEECTT-CCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSC
T ss_pred CcCChhHhccCccceEEECCC-CccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCcch
Confidence 345578899999999999999 4667778899999999999999999998788999999999999999999998766788
Q ss_pred ccCCcccchhhccccccCccCchhccCCCCCCEEEcccccCccccchhhcCCCCcC--eEeccCccccCcCCcccCCCCC
Q 008876 82 LGNLKNINQLLMHTNQFTGVIPDSFTNLTNLVRLDLHCNYLNGYIPEKIGELQLLE--QLDFSNNLLRGKLPPSLCNLTV 159 (550)
Q Consensus 82 ~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~--~L~l~~~~~~~~~~~~l~~~~~ 159 (550)
+..+++|++|++++|.+.......+..+++|++|++++|.+....+..+..+++|+ .+++++|.+....+..+ ...+
T Consensus 125 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~-~~~~ 203 (606)
T 3t6q_A 125 LHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAF-DSAV 203 (606)
T ss_dssp CTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTT-TTCE
T ss_pred hccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccChhHh-hhcc
Confidence 99999999999999999875544555699999999999999988788899999999 89999999886655554 4468
Q ss_pred CCEEEccCCcccccccCCCCCCCCCC--ccEEEcCCCcc---cccCCCCccCCC--CCcEEEcccCcccCcchhhccCCC
Q 008876 160 ISVLYLDNNKLEGAIPFPSSPGQMPS--LGFLRLQDNNL---TGKIPPTFGYLA--SLRRVSLANNKLEGAIPTSLGNLQ 232 (550)
Q Consensus 160 L~~L~l~~~~~~~~~~~~~~~~~~~~--L~~L~l~~~~~---~~~~~~~l~~~~--~L~~L~l~~~~~~~~~~~~l~~~~ 232 (550)
|+.++++++.... ..+..+.+ ++.+.+....- .......+..+. +++.++++++.+....+..++.++
T Consensus 204 L~~L~l~~~~~~~-----~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~ 278 (606)
T 3t6q_A 204 FQSLNFGGTQNLL-----VIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFS 278 (606)
T ss_dssp EEEEECTTCSCHH-----HHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCT
T ss_pred ccccccCCchhHH-----HHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhcccc
Confidence 9999999886211 11112222 23333322110 111112222222 688888888888877777788888
Q ss_pred CCcEEEecCccccCCCcccccCCCcccEEEccCCcccCCCCCcccCCCCccEEEccCCcccCCccchhcccCCCCcEEEe
Q 008876 233 DLTELYLNGNQLSGQIPKSISQLSQLIFLSISRNQIEGPLPSGMFSLQNLQTLDLSFNLLNLSSIPMWMAELPSLSRVYL 312 (550)
Q Consensus 233 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l 312 (550)
+|++|++++|.++ ..+..+..+++|++|++++|.+....+..+..+++|+.|++++|.+........+..+++|+.|++
T Consensus 279 ~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l 357 (606)
T 3t6q_A 279 GLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDL 357 (606)
T ss_dssp TCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEEC
T ss_pred CCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEEC
Confidence 8888888888877 456667788888888888888876556667778888888888886554433445777888888888
Q ss_pred ecccccccC--CccccCCCCCccEEEcccccCCCCchhhhhccccccEEEccCCeeeccCC-ccccCCCCCcEEEccCCc
Q 008876 313 AGCGIKGKI--PEFFRTTPSPLQELDLSVNHLSGSIPAWIGSLTQLYSLNLSRNSLVSSIP-ETITNLQDLVLLDLHSNK 389 (550)
Q Consensus 313 ~~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~ 389 (550)
++|.+.... +..+.... +|++|++++|.+.+..+..+..+++|+.|++++|.+....+ ..+..+++|++|++++|.
T Consensus 358 ~~n~l~~~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~ 436 (606)
T 3t6q_A 358 SHDDIETSDCCNLQLRNLS-HLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSL 436 (606)
T ss_dssp CSSCCCEEEESTTTTTTCT-TCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCC
T ss_pred CCCccccccCcchhcccCC-CCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCc
Confidence 888876554 33444444 48999999998887777788888999999999998886544 447888999999999998
Q ss_pred cccccccccccCCCCCCCCeEEEeccCCCCCCCC--CCCCCCCcccccEEeccCCcccCcCCcccccccccceeeCCCCc
Q 008876 390 LTGSISQVFKIGQRFPDGSLTYIDLSDNGFSSGI--ELTGGGGQTGIRFLNLSRNVLEGQIPVSVGRLRSLRSLDLSYNK 467 (550)
Q Consensus 390 i~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~ 467 (550)
+....+..+... ++|++|++++|.+.+.. ....+..+++|++|++++|.+++..+.++..+++|++|++++|+
T Consensus 437 l~~~~~~~~~~l-----~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~ 511 (606)
T 3t6q_A 437 LDISSEQLFDGL-----PALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNR 511 (606)
T ss_dssp CBTTCTTTTTTC-----TTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred cCCcCHHHHhCC-----CCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCc
Confidence 877666655543 78999999999887532 22357789999999999999998888999999999999999999
Q ss_pred cceeCCCcCCCCCCCcEEECcCccccccCCCcccCCCcCceeecCCccccccCC
Q 008876 468 LGYVLPGSLANESSLETLKLQNNRFTGRIPSEYLKLKKLKELDLSHNLLVGEIP 521 (550)
Q Consensus 468 i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ 521 (550)
+++..|..+.++++| +|++++|.+++..|..+..+++|++|++++|++.+.-+
T Consensus 512 l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 564 (606)
T 3t6q_A 512 LTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCS 564 (606)
T ss_dssp CCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGG
T ss_pred cCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCC
Confidence 999999999999999 99999999998877788999999999999999987544
No 8
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=2.8e-49 Score=424.90 Aligned_cols=514 Identities=24% Similarity=0.246 Sum_probs=415.8
Q ss_pred ccCcccEeeCCCCCCCCcCCCCCccCCCCCcEEeCCCccCCCCC-chhhhhccCCcEEEcCCCcCCCcccccccCCcccc
Q 008876 11 LLTSLEVLDLGGLVDLTGIIPPSIGCLQNLKKLYLYGNKLSGSV-PESISKLLKLEELHLHENRLSGTLSSSLGNLKNIN 89 (550)
Q Consensus 11 ~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 89 (550)
-.+++++|++++ +.+....|..+.++++|++|++++|.....+ |..|.++++|++|++++|.+....|..|..+++|+
T Consensus 22 lp~~l~~LdLs~-N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~ 100 (844)
T 3j0a_A 22 VLNTTERLLLSF-NYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLF 100 (844)
T ss_dssp SCTTCCEEEEES-CCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCC
T ss_pred CCCCcCEEECCC-CcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccC
Confidence 457899999999 4677777889999999999999999544344 78899999999999999999877789999999999
Q ss_pred hhhccccccCccCchh--ccCCCCCCEEEcccccCccccc-hhhcCCCCcCeEeccCccccCcCCcccCCC--CCCCEEE
Q 008876 90 QLLMHTNQFTGVIPDS--FTNLTNLVRLDLHCNYLNGYIP-EKIGELQLLEQLDFSNNLLRGKLPPSLCNL--TVISVLY 164 (550)
Q Consensus 90 ~L~l~~~~~~~~~~~~--l~~l~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~--~~L~~L~ 164 (550)
+|++++|.+.+..+.. +..+++|++|++++|.+....+ ..|..+++|++|++++|.+....+..+..+ ++|+.|+
T Consensus 101 ~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~ 180 (844)
T 3j0a_A 101 ELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFS 180 (844)
T ss_dssp CEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCE
T ss_pred EeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEE
Confidence 9999999998755554 8999999999999999876644 578999999999999999887777777766 8999999
Q ss_pred ccCCcccccccCCCCCCCCC------CccEEEcCCCcccccCCCCccC---CCCCcEEEcccC---------cccCcchh
Q 008876 165 LDNNKLEGAIPFPSSPGQMP------SLGFLRLQDNNLTGKIPPTFGY---LASLRRVSLANN---------KLEGAIPT 226 (550)
Q Consensus 165 l~~~~~~~~~~~~~~~~~~~------~L~~L~l~~~~~~~~~~~~l~~---~~~L~~L~l~~~---------~~~~~~~~ 226 (550)
+++|.+.+..+ ..+..++ .|+.|++++|.+....+..+.. ...++.+.+..+ .+......
T Consensus 181 L~~n~l~~~~~--~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~ 258 (844)
T 3j0a_A 181 LAANSLYSRVS--VDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQN 258 (844)
T ss_dssp ECCSBSCCCCC--CCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGT
T ss_pred CCCCccccccc--cchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChh
Confidence 99998876443 3344444 4999999999877555544432 256778877632 22222233
Q ss_pred hccCC--CCCcEEEecCccccCCCcccccCCCcccEEEccCCcccCCCCCcccCCCCccEEEccCCcccCCccchhcccC
Q 008876 227 SLGNL--QDLTELYLNGNQLSGQIPKSISQLSQLIFLSISRNQIEGPLPSGMFSLQNLQTLDLSFNLLNLSSIPMWMAEL 304 (550)
Q Consensus 227 ~l~~~--~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 304 (550)
.+..+ ++|++|++++|.+....+..+..+++|+.|++++|.+....+..+..+++|+.|++++|.++.. .+..+..+
T Consensus 259 ~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l 337 (844)
T 3j0a_A 259 TFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGEL-YSSNFYGL 337 (844)
T ss_dssp TTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCC-CSCSCSSC
T ss_pred hhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCcc-CHHHhcCC
Confidence 44443 7899999999998877777888999999999999998876677788899999999999976433 45678889
Q ss_pred CCCcEEEeecccccccCCccccCCCCCccEEEcccccCCCCchhhhhccccccEEEccCCeeeccCCccccCCCCCcEEE
Q 008876 305 PSLSRVYLAGCGIKGKIPEFFRTTPSPLQELDLSVNHLSGSIPAWIGSLTQLYSLNLSRNSLVSSIPETITNLQDLVLLD 384 (550)
Q Consensus 305 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~ 384 (550)
++|+.|++++|.+.......+..... |+.|++++|.++.. ..+++|+.+++++|.+..... ...+++.++
T Consensus 338 ~~L~~L~L~~N~i~~~~~~~~~~l~~-L~~L~Ls~N~l~~i-----~~~~~L~~L~l~~N~l~~l~~----~~~~l~~L~ 407 (844)
T 3j0a_A 338 PKVAYIDLQKNHIAIIQDQTFKFLEK-LQTLDLRDNALTTI-----HFIPSIPDIFLSGNKLVTLPK----INLTANLIH 407 (844)
T ss_dssp TTCCEEECCSCCCCCCCSSCSCSCCC-CCEEEEETCCSCCC-----SSCCSCSEEEEESCCCCCCCC----CCTTCCEEE
T ss_pred CCCCEEECCCCCCCccChhhhcCCCC-CCEEECCCCCCCcc-----cCCCCcchhccCCCCcccccc----cccccceee
Confidence 99999999999887666665655544 99999999998743 337899999999999874432 246799999
Q ss_pred ccCCccccccccccccCCCCCCCCeEEEeccCCCCCCCCCCCCCCCcccccEEeccCCccc-----CcCCcccccccccc
Q 008876 385 LHSNKLTGSISQVFKIGQRFPDGSLTYIDLSDNGFSSGIELTGGGGQTGIRFLNLSRNVLE-----GQIPVSVGRLRSLR 459 (550)
Q Consensus 385 l~~~~i~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~-----~~~~~~l~~l~~L~ 459 (550)
+++|+++......+.. ..++|++|++++|.+.+......+..+++|+.|++++|.++ +..+..+.++++|+
T Consensus 408 ls~N~l~~l~~~~~~~----~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~ 483 (844)
T 3j0a_A 408 LSENRLENLDILYFLL----RVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQ 483 (844)
T ss_dssp CCSCCCCSSTTHHHHT----TCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEE
T ss_pred cccCccccCchhhhhh----cCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCccccc
Confidence 9999998665432221 12789999999999986555545677899999999999987 33456788999999
Q ss_pred eeeCCCCccceeCCCcCCCCCCCcEEECcCccccccCCCcccCCCcCceeecCCccccccCCCCCCCCCccccCCCCCCC
Q 008876 460 SLDLSYNKLGYVLPGSLANESSLETLKLQNNRFTGRIPSEYLKLKKLKELDLSHNLLVGEIPAGKPLSDFPESSFSGNRG 539 (550)
Q Consensus 460 ~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~~~~~~ 539 (550)
.|+|++|.++...+..+.++++|++|++++|.++...+..+. ++|+.|++++|.+++..|+.+ .++++++++||||
T Consensus 484 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~--~~L~~l~l~~Np~ 559 (844)
T 3j0a_A 484 VLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVF--VSLSVLDITHNKF 559 (844)
T ss_dssp CCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCC--SSCCEEEEEEECC
T ss_pred EEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhHh--CCcCEEEecCCCc
Confidence 999999999999999999999999999999999976655555 999999999999999888764 5799999999999
Q ss_pred CCCCCCC
Q 008876 540 LCGKPLT 546 (550)
Q Consensus 540 ~~~~~~~ 546 (550)
.|+|++.
T Consensus 560 ~C~c~~~ 566 (844)
T 3j0a_A 560 ICECELS 566 (844)
T ss_dssp CCSSSCC
T ss_pred ccccccH
Confidence 9999874
No 9
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=1.4e-48 Score=406.60 Aligned_cols=495 Identities=21% Similarity=0.201 Sum_probs=405.5
Q ss_pred CCCccccccCcccEeeCCCCCCCCcCCCCCccCCCCCcEEeCCCccCCCCCchhhhhccCCcEEEcCCCcCCCccccccc
Q 008876 4 SLSPSISLLTSLEVLDLGGLVDLTGIIPPSIGCLQNLKKLYLYGNKLSGSVPESISKLLKLEELHLHENRLSGTLSSSLG 83 (550)
Q Consensus 4 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~ 83 (550)
.+|..+. +++++|++++ +.+.+..+..+.++++|++|++++|.+++..|..|.++++|++|++++|.+....|..|.
T Consensus 25 ~ip~~~~--~~l~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~ 101 (606)
T 3vq2_A 25 KVPDDIP--SSTKNIDLSF-NPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFS 101 (606)
T ss_dssp SCCTTSC--TTCCEEECTT-SCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSST
T ss_pred cCCCCCC--CCcCEEECCC-CCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcC
Confidence 4555553 7899999999 566666677899999999999999999877788899999999999999999877788999
Q ss_pred CCcccchhhccccccCccCchhccCCCCCCEEEcccccCcc-ccchhhcCCCCcCeEeccCccccCcCCcccCCCCCCC-
Q 008876 84 NLKNINQLLMHTNQFTGVIPDSFTNLTNLVRLDLHCNYLNG-YIPEKIGELQLLEQLDFSNNLLRGKLPPSLCNLTVIS- 161 (550)
Q Consensus 84 ~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~- 161 (550)
++++|++|++++|.+....+..+..+++|++|++++|.+.. ..+..+..+++|++|++++|.+....+..+..+.+|+
T Consensus 102 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 181 (606)
T 3vq2_A 102 GLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQ 181 (606)
T ss_dssp TCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTT
T ss_pred CcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhcccc
Confidence 99999999999999987776789999999999999999875 3588899999999999999998876666666665554
Q ss_pred ---EEEccCCcccccccCCCCCCCCCCccEEEcCCCccc-ccCCCCccCCCCCcEEE-----------------------
Q 008876 162 ---VLYLDNNKLEGAIPFPSSPGQMPSLGFLRLQDNNLT-GKIPPTFGYLASLRRVS----------------------- 214 (550)
Q Consensus 162 ---~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~l~~~~~L~~L~----------------------- 214 (550)
.+++++|.+....+ ..+.. .+|+.|+++++.+. ...+..+..++.++.+.
T Consensus 182 ~l~~L~l~~n~l~~~~~--~~~~~-~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l 258 (606)
T 3vq2_A 182 VNLSLDMSLNPIDFIQD--QAFQG-IKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGL 258 (606)
T ss_dssp CCCEEECTTCCCCEECT--TTTTT-CEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTG
T ss_pred ccceeeccCCCcceeCc--ccccC-ceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhh
Confidence 89999998875433 33333 48999999998764 22223334444444443
Q ss_pred ---------c-ccCcccCcchhhccCCCCCcEEEecCccccCCCcccccCCCcccEEEccCCcccCCCCCcccCCCCccE
Q 008876 215 ---------L-ANNKLEGAIPTSLGNLQDLTELYLNGNQLSGQIPKSISQLSQLIFLSISRNQIEGPLPSGMFSLQNLQT 284 (550)
Q Consensus 215 ---------l-~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 284 (550)
+ ..+.+.+..+. +..+++|++++++++.+... + .+..+++|+.|++++|.+. .++ .+ .+++|+.
T Consensus 259 ~~l~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~l-~-~l~~~~~L~~L~l~~n~l~-~lp-~~-~l~~L~~ 332 (606)
T 3vq2_A 259 CDVTIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIKYL-E-DVPKHFKWQSLSIIRCQLK-QFP-TL-DLPFLKS 332 (606)
T ss_dssp GGSEEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCCCCC-C-CCCTTCCCSEEEEESCCCS-SCC-CC-CCSSCCE
T ss_pred hhccHhheeccccccccccccc-cccCCCCCEEEecCccchhh-h-hccccccCCEEEcccccCc-ccc-cC-CCCccce
Confidence 3 34444544444 77889999999999998743 3 7888999999999999994 666 34 8999999
Q ss_pred EEccCCcccCCccchhcccCCCCcEEEeecccccccC--CccccCCCCCccEEEcccccCCCCchhhhhccccccEEEcc
Q 008876 285 LDLSFNLLNLSSIPMWMAELPSLSRVYLAGCGIKGKI--PEFFRTTPSPLQELDLSVNHLSGSIPAWIGSLTQLYSLNLS 362 (550)
Q Consensus 285 L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 362 (550)
|++++|.... ...+..+++|+.|++++|.+.... +..+.... +|++|++++|.+... +..+..+++|+.|+++
T Consensus 333 L~l~~n~~~~---~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~-~L~~L~L~~n~l~~~-~~~~~~l~~L~~L~l~ 407 (606)
T 3vq2_A 333 LTLTMNKGSI---SFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTN-SLRHLDLSFNGAIIM-SANFMGLEELQHLDFQ 407 (606)
T ss_dssp EEEESCSSCE---ECCCCCCTTCCEEECCSSCEEEEEECCHHHHCCS-CCCEEECCSCSEEEE-CCCCTTCTTCCEEECT
T ss_pred eeccCCcCcc---chhhccCCCCCEEECcCCccCCCcchhhhhccCC-cccEeECCCCccccc-hhhccCCCCCCeeECC
Confidence 9999984322 225668999999999999887553 44444444 499999999998753 4678889999999999
Q ss_pred CCeeeccCC-ccccCCCCCcEEEccCCccccccccccccCCCCCCCCeEEEeccCCCCCCCCCCCCCCCcccccEEeccC
Q 008876 363 RNSLVSSIP-ETITNLQDLVLLDLHSNKLTGSISQVFKIGQRFPDGSLTYIDLSDNGFSSGIELTGGGGQTGIRFLNLSR 441 (550)
Q Consensus 363 ~~~~~~~~~-~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~ 441 (550)
+|.+....+ ..+..+++|++|++++|++....+..+... ++|++|++++|.+.+......+..+++|++|++++
T Consensus 408 ~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l-----~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~ 482 (606)
T 3vq2_A 408 HSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGL-----TSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSK 482 (606)
T ss_dssp TSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTC-----TTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTT
T ss_pred CCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCC-----CCCCEEECCCCcCCCcchHHhhccCCCCCEEECCC
Confidence 999998766 678899999999999999987766665544 79999999999998754555788999999999999
Q ss_pred CcccCcCCcccccccccceeeCCCCccceeCCCcCCCCCCCcEEECcCccccccCCCcccCCC-cCceeecCCccccccC
Q 008876 442 NVLEGQIPVSVGRLRSLRSLDLSYNKLGYVLPGSLANESSLETLKLQNNRFTGRIPSEYLKLK-KLKELDLSHNLLVGEI 520 (550)
Q Consensus 442 ~~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~-~L~~L~l~~n~~~~~~ 520 (550)
|.+++..+..+.++++|++|++++|++++..|..+.++++|++|++++|.++ .+|..+..++ +|++|++++|++.+.-
T Consensus 483 n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c 561 (606)
T 3vq2_A 483 CQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACIC 561 (606)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSS
T ss_pred CcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCC
Confidence 9999888999999999999999999999998999999999999999999998 6777788887 6999999999998755
Q ss_pred C
Q 008876 521 P 521 (550)
Q Consensus 521 ~ 521 (550)
+
T Consensus 562 ~ 562 (606)
T 3vq2_A 562 E 562 (606)
T ss_dssp T
T ss_pred c
Confidence 5
No 10
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=4.4e-46 Score=385.37 Aligned_cols=509 Identities=19% Similarity=0.190 Sum_probs=368.2
Q ss_pred cEeeCCCCCCCCcCCCCCccCCCCCcEEeCCCccCCCCCchhhhhccCCcEEEcCCCcCCCcccccccCCcccchhhccc
Q 008876 16 EVLDLGGLVDLTGIIPPSIGCLQNLKKLYLYGNKLSGSVPESISKLLKLEELHLHENRLSGTLSSSLGNLKNINQLLMHT 95 (550)
Q Consensus 16 ~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 95 (550)
+.++.++ ..+ ..+|..+. +++++|+++++.+++..+..|.++++|++|++++|.+....+..|.++++|++|++++
T Consensus 10 ~~~~c~~-~~l-~~ip~~l~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~ 85 (570)
T 2z63_A 10 ITYQCME-LNF-YKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTG 85 (570)
T ss_dssp TEEECCS-SCC-SSCCSSSC--SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTT
T ss_pred cEEEeCC-CCc-cccCCCcc--ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcC
Confidence 4455554 222 24555442 4678888888887766666777888888888888877756666777888888888888
Q ss_pred cccCccCchhccCCCCCCEEEcccccCccccchhhcCCCCcCeEeccCccccC-cCCcccCCCCCCCEEEccCCcccccc
Q 008876 96 NQFTGVIPDSFTNLTNLVRLDLHCNYLNGYIPEKIGELQLLEQLDFSNNLLRG-KLPPSLCNLTVISVLYLDNNKLEGAI 174 (550)
Q Consensus 96 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-~~~~~l~~~~~L~~L~l~~~~~~~~~ 174 (550)
|.+....+.+|.++++|++|++++|.+....+..+..+++|++|++++|.+.. ..|..+.++++|++|++++|.+.+..
T Consensus 86 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~ 165 (570)
T 2z63_A 86 NPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY 165 (570)
T ss_dssp CCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEEC
T ss_pred CcCCccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceec
Confidence 88776666778888888888888887776555567778888888888887764 35777778888888888888765432
Q ss_pred cCCCCCCCCCCc----cEEEcCCCcccccCCCCccCCCCCcEEEcccCccc-CcchhhccCCCCCcEEEecCcccc----
Q 008876 175 PFPSSPGQMPSL----GFLRLQDNNLTGKIPPTFGYLASLRRVSLANNKLE-GAIPTSLGNLQDLTELYLNGNQLS---- 245 (550)
Q Consensus 175 ~~~~~~~~~~~L----~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~~~~~~l~~~~~L~~L~l~~~~~~---- 245 (550)
+ ..++.+++| +.++++++.+....+..+... +|++++++++... ...+..+..+++++...+....+.
T Consensus 166 ~--~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~ 242 (570)
T 2z63_A 166 C--TDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGN 242 (570)
T ss_dssp G--GGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSS
T ss_pred H--HHccchhccchhhhhcccCCCCceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCchh
Confidence 2 334455555 678888887776666655544 7888888776432 123445566666666655433221
Q ss_pred --CCCcccccCCC--cccEEEccCC-cccCCCCCcccCCCCccEEEccCCcccCCccchhcccCCCCcEEEeeccccccc
Q 008876 246 --GQIPKSISQLS--QLIFLSISRN-QIEGPLPSGMFSLQNLQTLDLSFNLLNLSSIPMWMAELPSLSRVYLAGCGIKGK 320 (550)
Q Consensus 246 --~~~~~~l~~~~--~L~~L~l~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 320 (550)
......+..++ .++.+++.++ .+....+..+..+++|+.|+++++.+. .++..+..+ +|+.|++.+|.+...
T Consensus 243 l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~--~l~~~~~~~-~L~~L~l~~n~~~~l 319 (570)
T 2z63_A 243 LEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE--RVKDFSYNF-GWQHLELVNCKFGQF 319 (570)
T ss_dssp CEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEEC--SCCBCCSCC-CCSEEEEESCBCSSC
T ss_pred hhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccch--hhhhhhccC-CccEEeeccCccccc
Confidence 11111222222 3456666666 455556666777788888888887554 456666666 888888888877632
Q ss_pred CCccccCCCCCccEEEcccccCCCCchhhhhccccccEEEccCCeeeccC--CccccCCCCCcEEEccCCcccccccccc
Q 008876 321 IPEFFRTTPSPLQELDLSVNHLSGSIPAWIGSLTQLYSLNLSRNSLVSSI--PETITNLQDLVLLDLHSNKLTGSISQVF 398 (550)
Q Consensus 321 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~l~~~~~L~~L~l~~~~i~~~~~~~~ 398 (550)
.. ...++|+.|++++|.+...... ..+++|+.|++++|.+.... +..+..+++|++|++++|.+...... +
T Consensus 320 ~~----~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~ 392 (570)
T 2z63_A 320 PT----LKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-F 392 (570)
T ss_dssp CB----CBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-E
T ss_pred Cc----ccccccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-c
Confidence 22 2234488888888877644333 67788888888888876543 45567788888888888888766554 3
Q ss_pred ccCCCCCCCCeEEEeccCCCCCCCCCCCCCCCcccccEEeccCCcccCcCCcccccccccceeeCCCCccc-eeCCCcCC
Q 008876 399 KIGQRFPDGSLTYIDLSDNGFSSGIELTGGGGQTGIRFLNLSRNVLEGQIPVSVGRLRSLRSLDLSYNKLG-YVLPGSLA 477 (550)
Q Consensus 399 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~i~-~~~~~~l~ 477 (550)
... ++|++|++++|.+.+..+...+..+++|++|++++|.+.+..+..+.++++|++|++++|.+. ...|..+.
T Consensus 393 ~~l-----~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~ 467 (570)
T 2z63_A 393 LGL-----EQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFT 467 (570)
T ss_dssp ETC-----TTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCT
T ss_pred ccc-----CCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhh
Confidence 332 788888888888877666557788999999999999998888888999999999999999987 46788899
Q ss_pred CCCCCcEEECcCccccccCCCcccCCCcCceeecCCccccccCCCCC-CCCCccccCCCCCCCCCCCCCC
Q 008876 478 NESSLETLKLQNNRFTGRIPSEYLKLKKLKELDLSHNLLVGEIPAGK-PLSDFPESSFSGNRGLCGKPLT 546 (550)
Q Consensus 478 ~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~ 546 (550)
++++|++|++++|.+++..|..+..+++|++|++++|.+.+..|..+ .+++++++++++||+.|+|+..
T Consensus 468 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~ 537 (570)
T 2z63_A 468 ELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI 537 (570)
T ss_dssp TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTT
T ss_pred cccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcch
Confidence 99999999999999998888899999999999999999988766654 4788999999999999999864
No 11
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=9.4e-45 Score=375.43 Aligned_cols=498 Identities=22% Similarity=0.220 Sum_probs=397.9
Q ss_pred CCCccccccCcccEeeCCCCCCCCcCCCCCccCCCCCcEEeCCCccCCCCCchhhhhccCCcEEEcCCCcCCCccccccc
Q 008876 4 SLSPSISLLTSLEVLDLGGLVDLTGIIPPSIGCLQNLKKLYLYGNKLSGSVPESISKLLKLEELHLHENRLSGTLSSSLG 83 (550)
Q Consensus 4 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~ 83 (550)
.+|..+. +++++|++++ +.+.+..+..|.++++|++|++++|.+++..+..|.++++|++|++++|.+....+..|.
T Consensus 21 ~ip~~l~--~~l~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 97 (570)
T 2z63_A 21 KIPDNLP--FSTKNLDLSF-NPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFS 97 (570)
T ss_dssp SCCSSSC--SSCCEEECCS-CCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTT
T ss_pred ccCCCcc--ccccEEEccC-CccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhc
Confidence 3555443 5799999999 466666677899999999999999999877788899999999999999999867778899
Q ss_pred CCcccchhhccccccCccCchhccCCCCCCEEEcccccCccc-cchhhcCCCCcCeEeccCccccCcCCcccCCCCCC--
Q 008876 84 NLKNINQLLMHTNQFTGVIPDSFTNLTNLVRLDLHCNYLNGY-IPEKIGELQLLEQLDFSNNLLRGKLPPSLCNLTVI-- 160 (550)
Q Consensus 84 ~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L-- 160 (550)
.+++|++|++++|.+....+..+..+++|++|++++|.+... .+..+..+++|++|++++|.+....+..+..+++|
T Consensus 98 ~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 177 (570)
T 2z63_A 98 GLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPL 177 (570)
T ss_dssp TCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTT
T ss_pred CccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccch
Confidence 999999999999999866655799999999999999998864 57889999999999999999887667777777777
Q ss_pred --CEEEccCCcccccccCCCCCCCCCCccEEEcCCCccc-ccCCCCccCCCCCcEEEcccCccc------CcchhhccCC
Q 008876 161 --SVLYLDNNKLEGAIPFPSSPGQMPSLGFLRLQDNNLT-GKIPPTFGYLASLRRVSLANNKLE------GAIPTSLGNL 231 (550)
Q Consensus 161 --~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~l~~~~~L~~L~l~~~~~~------~~~~~~l~~~ 231 (550)
+.+++++|.+....+ ..+... +|+.|+++++... ...+..+..++.++...+....+. ......+..+
T Consensus 178 ~~~~L~l~~n~l~~~~~--~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l 254 (570)
T 2z63_A 178 LNLSLDLSLNPMNFIQP--GAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGL 254 (570)
T ss_dssp CCCEEECTTCCCCEECT--TTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGG
T ss_pred hhhhcccCCCCceecCH--HHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccc
Confidence 899999998876543 444444 8999999887432 112233445566665554332211 1111222222
Q ss_pred C--CCcEEEecCc-cccCCCcccccCCCcccEEEccCCcccCCCCCcccCCCCccEEEccCCcccCCccchhcccCCCCc
Q 008876 232 Q--DLTELYLNGN-QLSGQIPKSISQLSQLIFLSISRNQIEGPLPSGMFSLQNLQTLDLSFNLLNLSSIPMWMAELPSLS 308 (550)
Q Consensus 232 ~--~L~~L~l~~~-~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~ 308 (550)
+ .++.+++.++ .+....+..+..+++|+.|+++++.+. .++..+..+ +|++|++++|.+. .++. ..+++|+
T Consensus 255 ~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~--~l~~--~~l~~L~ 328 (570)
T 2z63_A 255 CNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFG--QFPT--LKLKSLK 328 (570)
T ss_dssp GGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCS--SCCB--CBCSSCC
T ss_pred cccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccch-hhhhhhccC-CccEEeeccCccc--ccCc--ccccccC
Confidence 2 3566666666 555566777888899999999999887 577777777 9999999998765 3333 4789999
Q ss_pred EEEeecccccccCCccccCCCCCccEEEcccccCCCCc--hhhhhccccccEEEccCCeeeccCCccccCCCCCcEEEcc
Q 008876 309 RVYLAGCGIKGKIPEFFRTTPSPLQELDLSVNHLSGSI--PAWIGSLTQLYSLNLSRNSLVSSIPETITNLQDLVLLDLH 386 (550)
Q Consensus 309 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~ 386 (550)
.+++.++.+...... ...++|++|++++|.+.... +..+..+++|+.|++++|.+....+. +..+++|++|+++
T Consensus 329 ~L~l~~n~~~~~~~~---~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~ 404 (570)
T 2z63_A 329 RLTFTSNKGGNAFSE---VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQ 404 (570)
T ss_dssp EEEEESCBSCCBCCC---CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECT
T ss_pred EEeCcCCcccccccc---ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEcc
Confidence 999999887655443 33455999999999987553 56788899999999999998876554 8899999999999
Q ss_pred CCccccccc-cccccCCCCCCCCeEEEeccCCCCCCCCCCCCCCCcccccEEeccCCccc-CcCCcccccccccceeeCC
Q 008876 387 SNKLTGSIS-QVFKIGQRFPDGSLTYIDLSDNGFSSGIELTGGGGQTGIRFLNLSRNVLE-GQIPVSVGRLRSLRSLDLS 464 (550)
Q Consensus 387 ~~~i~~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~-~~~~~~l~~l~~L~~L~l~ 464 (550)
+|.+....+ ..+... ++|++|++++|.+.+..+ ..+..+++|++|++++|.++ +..+..+..+++|++|+++
T Consensus 405 ~n~l~~~~~~~~~~~l-----~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~ 478 (570)
T 2z63_A 405 HSNLKQMSEFSVFLSL-----RNLIYLDISHTHTRVAFN-GIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS 478 (570)
T ss_dssp TSEEESCTTSCTTTTC-----TTCCEEECTTSCCEECCT-TTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECT
T ss_pred CCccccccchhhhhcC-----CCCCEEeCcCCcccccch-hhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECC
Confidence 999876544 233322 799999999999876544 36788999999999999997 4678899999999999999
Q ss_pred CCccceeCCCcCCCCCCCcEEECcCccccccCCCcccCCCcCceeecCCccccccCCCC
Q 008876 465 YNKLGYVLPGSLANESSLETLKLQNNRFTGRIPSEYLKLKKLKELDLSHNLLVGEIPAG 523 (550)
Q Consensus 465 ~n~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~ 523 (550)
+|++++..|.++.++++|++|++++|.+++..+..+..+++|++|++++|++.+..|..
T Consensus 479 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~ 537 (570)
T 2z63_A 479 QCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI 537 (570)
T ss_dssp TSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTT
T ss_pred CCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcch
Confidence 99999999999999999999999999999877778999999999999999999988764
No 12
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=1.5e-44 Score=388.18 Aligned_cols=500 Identities=22% Similarity=0.222 Sum_probs=383.4
Q ss_pred CCCCCccccccCcccEeeCCCCCCCCcCCCCCccCCCCCcEEeCCCccCCCCCchhhhhccCCcEEEcCCCcCCCccccc
Q 008876 2 KGSLSPSISLLTSLEVLDLGGLVDLTGIIPPSIGCLQNLKKLYLYGNKLSGSVPESISKLLKLEELHLHENRLSGTLSSS 81 (550)
Q Consensus 2 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~ 81 (550)
++..|.+|+++++|++|++++|.......|.+|.++++|++|++++|.+....|..|.++++|++|++++|.+....+..
T Consensus 37 ~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~ 116 (844)
T 3j0a_A 37 RTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKD 116 (844)
T ss_dssp CEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTT
T ss_pred CccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccC
Confidence 45568889999999999999975555445888999999999999999999888999999999999999999987544544
Q ss_pred --ccCCcccchhhccccccCccCc-hhccCCCCCCEEEcccccCccccchhhcCC--CCcCeEeccCccccCcCCcccCC
Q 008876 82 --LGNLKNINQLLMHTNQFTGVIP-DSFTNLTNLVRLDLHCNYLNGYIPEKIGEL--QLLEQLDFSNNLLRGKLPPSLCN 156 (550)
Q Consensus 82 --~~~l~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l--~~L~~L~l~~~~~~~~~~~~l~~ 156 (550)
+..+++|++|++++|.+....+ ..|.++++|++|++++|.+....+..+..+ ++|+.|++++|.+....+..+..
T Consensus 117 ~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~ 196 (844)
T 3j0a_A 117 GYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGK 196 (844)
T ss_dssp CCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCS
T ss_pred ccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhh
Confidence 8899999999999999986654 578999999999999999987777788776 89999999999988766666665
Q ss_pred CCC------CCEEEccCCcccccccCC-CCCCCCCCccEEEcCCCcc---------cccCCCCccC--CCCCcEEEcccC
Q 008876 157 LTV------ISVLYLDNNKLEGAIPFP-SSPGQMPSLGFLRLQDNNL---------TGKIPPTFGY--LASLRRVSLANN 218 (550)
Q Consensus 157 ~~~------L~~L~l~~~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~---------~~~~~~~l~~--~~~L~~L~l~~~ 218 (550)
+.+ |+.|++++|.+....+.. ......+.++.+.+..+.. .......+.. .++|+.|++++|
T Consensus 197 ~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n 276 (844)
T 3j0a_A 197 CMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHG 276 (844)
T ss_dssp SSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTC
T ss_pred cCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCC
Confidence 554 999999999765432200 0111235677777663321 1112223333 267888888888
Q ss_pred cccCcchhhccCCCCCcEEEecCccccCCCcccccCCCcccEEEccCCcccCCCCCcccCCCCccEEEccCCcccCCccc
Q 008876 219 KLEGAIPTSLGNLQDLTELYLNGNQLSGQIPKSISQLSQLIFLSISRNQIEGPLPSGMFSLQNLQTLDLSFNLLNLSSIP 298 (550)
Q Consensus 219 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 298 (550)
.+....+..+..+++|++|++++|.+....+..+..+++|+.|++++|.+....+..+..+++|+.|++++|.+... .+
T Consensus 277 ~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~-~~ 355 (844)
T 3j0a_A 277 FVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAII-QD 355 (844)
T ss_dssp CCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCC-CS
T ss_pred cccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCcc-Ch
Confidence 88766677788888888888888888766667778888888888888888766677777888888888888865433 23
Q ss_pred hhcccCCCCcEEEeecccccccCCccccCCCCCccEEEcccccCCCCchhhhhccccccEEEccCCeeeccCC-ccccCC
Q 008876 299 MWMAELPSLSRVYLAGCGIKGKIPEFFRTTPSPLQELDLSVNHLSGSIPAWIGSLTQLYSLNLSRNSLVSSIP-ETITNL 377 (550)
Q Consensus 299 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~l~~~ 377 (550)
..+..+++|+.|++++|.+..... .++|+.+++++|++.... ....+++.+++++|.+..... ..+..+
T Consensus 356 ~~~~~l~~L~~L~Ls~N~l~~i~~------~~~L~~L~l~~N~l~~l~----~~~~~l~~L~ls~N~l~~l~~~~~~~~l 425 (844)
T 3j0a_A 356 QTFKFLEKLQTLDLRDNALTTIHF------IPSIPDIFLSGNKLVTLP----KINLTANLIHLSENRLENLDILYFLLRV 425 (844)
T ss_dssp SCSCSCCCCCEEEEETCCSCCCSS------CCSCSEEEEESCCCCCCC----CCCTTCCEEECCSCCCCSSTTHHHHTTC
T ss_pred hhhcCCCCCCEEECCCCCCCcccC------CCCcchhccCCCCccccc----ccccccceeecccCccccCchhhhhhcC
Confidence 456778888888888887664321 344888888888887332 124678888888888876433 234578
Q ss_pred CCCcEEEccCCccccccccccccCCCCCCCCeEEEeccCCCCCCC----CCCCCCCCcccccEEeccCCcccCcCCcccc
Q 008876 378 QDLVLLDLHSNKLTGSISQVFKIGQRFPDGSLTYIDLSDNGFSSG----IELTGGGGQTGIRFLNLSRNVLEGQIPVSVG 453 (550)
Q Consensus 378 ~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~ 453 (550)
++|++|++++|+++......... ..++|+.|++++|.+... .....+..+++|++|++++|.+++..+..+.
T Consensus 426 ~~L~~L~Ls~N~l~~~~~~~~~~----~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 501 (844)
T 3j0a_A 426 PHLQILILNQNRFSSCSGDQTPS----ENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFS 501 (844)
T ss_dssp TTCCEEEEESCCCCCCCSSSSSC----SCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSS
T ss_pred CccceeeCCCCcccccccccccc----cCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHcc
Confidence 88888888888887544332211 127888888888887632 2234577889999999999999988888899
Q ss_pred cccccceeeCCCCccceeCCCcCCCCCCCcEEECcCccccccCCCcccCCCcCceeecCCccccccCC
Q 008876 454 RLRSLRSLDLSYNKLGYVLPGSLANESSLETLKLQNNRFTGRIPSEYLKLKKLKELDLSHNLLVGEIP 521 (550)
Q Consensus 454 ~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ 521 (550)
++++|+.|+|++|+++...+..+. ++|+.|++++|.+++..|..+ ++|+.+++++|++.+.-+
T Consensus 502 ~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~---~~L~~l~l~~Np~~C~c~ 564 (844)
T 3j0a_A 502 HLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVF---VSLSVLDITHNKFICECE 564 (844)
T ss_dssp SCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCC---SSCCEEEEEEECCCCSSS
T ss_pred chhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhHh---CCcCEEEecCCCcccccc
Confidence 999999999999999987777776 899999999999998777654 589999999999886443
No 13
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=5.8e-44 Score=367.50 Aligned_cols=467 Identities=18% Similarity=0.140 Sum_probs=284.1
Q ss_pred CCCcEEeCCCccCCCCCchhhhhccCCcEEEcCCCcCCCcccccccCCcccchhhccccccCccCchhccCCCCCCEEEc
Q 008876 38 QNLKKLYLYGNKLSGSVPESISKLLKLEELHLHENRLSGTLSSSLGNLKNINQLLMHTNQFTGVIPDSFTNLTNLVRLDL 117 (550)
Q Consensus 38 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 117 (550)
++|++|+++++.+++..|..|.++++|++|++++|.+....+..|..+++|++|++++|.+.+..+.++..+++|++|++
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 105 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNL 105 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEEC
T ss_pred CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEEC
Confidence 45556666655555444555555555555555555555444444555555555555555554444444555555555555
Q ss_pred ccccCccccchhhcCCCCcCeEeccCccccCcCCcccCCCCCCCEEEccCCcccccccCCCCCCCCCCccEEEcCCCccc
Q 008876 118 HCNYLNGYIPEKIGELQLLEQLDFSNNLLRGKLPPSLCNLTVISVLYLDNNKLEGAIPFPSSPGQMPSLGFLRLQDNNLT 197 (550)
Q Consensus 118 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 197 (550)
++|.+... ..+..+..+++|++|++++|...+..+ ...+..+++|++|++++|.+.
T Consensus 106 s~n~l~~~-----------------------~~~~~~~~l~~L~~L~L~~n~~~~~~~-~~~~~~l~~L~~L~L~~n~l~ 161 (549)
T 2z81_A 106 MGNPYQTL-----------------------GVTSLFPNLTNLQTLRIGNVETFSEIR-RIDFAGLTSLNELEIKALSLR 161 (549)
T ss_dssp TTCCCSSS-----------------------CSSCSCTTCTTCCEEEEEESSSCCEEC-TTTTTTCCEEEEEEEEETTCC
T ss_pred CCCccccc-----------------------chhhhhhccCCccEEECCCCccccccC-HhhhhcccccCeeeccCCccc
Confidence 55544432 122334444455555554444221111 123455556666666666555
Q ss_pred ccCCCCccCCCCCcEEEcccCcccCcchhhccCCCCCcEEEecCccccCCC---cccccCCCcccEEEccCCcccCCC--
Q 008876 198 GKIPPTFGYLASLRRVSLANNKLEGAIPTSLGNLQDLTELYLNGNQLSGQI---PKSISQLSQLIFLSISRNQIEGPL-- 272 (550)
Q Consensus 198 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~---~~~l~~~~~L~~L~l~~~~~~~~~-- 272 (550)
...+..+..+++|++|+++++.........+..+++|++|++++|.+.... ......+++|+.|+++++.+.+..
T Consensus 162 ~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 241 (549)
T 2z81_A 162 NYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFN 241 (549)
T ss_dssp EECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHH
T ss_pred ccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHH
Confidence 555555566666666666666554332223345666666666666655321 112234566666666666554321
Q ss_pred --CCcccCCCCccEEEccCCcccCCc-----cchhcccCCCCcEEEeecccccccCC----ccccCCCCCccEEEccccc
Q 008876 273 --PSGMFSLQNLQTLDLSFNLLNLSS-----IPMWMAELPSLSRVYLAGCGIKGKIP----EFFRTTPSPLQELDLSVNH 341 (550)
Q Consensus 273 --~~~~~~~~~L~~L~l~~~~~~~~~-----~~~~~~~~~~L~~L~l~~~~~~~~~~----~~~~~~~~~L~~L~l~~~~ 341 (550)
...+..+++|+.+++++|.+.... ....+..+++++.+.+.++.+..... ........+++.|++++|.
T Consensus 242 ~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~ 321 (549)
T 2z81_A 242 ELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSK 321 (549)
T ss_dssp HHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSC
T ss_pred HHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCc
Confidence 112234566667766666433211 11234556677777777765443210 0001122358888888888
Q ss_pred CCCCchhhhhccccccEEEccCCeeeccCC---ccccCCCCCcEEEccCCccccccc--cccccCCCCCCCCeEEEeccC
Q 008876 342 LSGSIPAWIGSLTQLYSLNLSRNSLVSSIP---ETITNLQDLVLLDLHSNKLTGSIS--QVFKIGQRFPDGSLTYIDLSD 416 (550)
Q Consensus 342 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~---~~l~~~~~L~~L~l~~~~i~~~~~--~~~~~~~~~~~~~L~~L~l~~ 416 (550)
+.......+..+++|+.|++++|.+.+..+ ..+..+++|++|++++|+++.... ..+... ++|++|++++
T Consensus 322 l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l-----~~L~~L~Ls~ 396 (549)
T 2z81_A 322 VFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTL-----KNLTSLDISR 396 (549)
T ss_dssp CCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGC-----TTCCEEECTT
T ss_pred cccCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcC-----CCCCEEECCC
Confidence 875544455678889999999888876432 335678889999999988876542 223322 7889999999
Q ss_pred CCCCCCCCCCCCCCcccccEEeccCCcccCcCCcccccccccceeeCCCCccceeCCCcCCCCCCCcEEECcCccccccC
Q 008876 417 NGFSSGIELTGGGGQTGIRFLNLSRNVLEGQIPVSVGRLRSLRSLDLSYNKLGYVLPGSLANESSLETLKLQNNRFTGRI 496 (550)
Q Consensus 417 ~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 496 (550)
|.+.. ++. .+..+++|++|++++|.++.. +..+ .++|++|++++|++++.. .++++|++|++++|.+. .+
T Consensus 397 N~l~~-lp~-~~~~~~~L~~L~Ls~N~l~~l-~~~~--~~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~-~i 466 (549)
T 2z81_A 397 NTFHP-MPD-SCQWPEKMRFLNLSSTGIRVV-KTCI--PQTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLK-TL 466 (549)
T ss_dssp CCCCC-CCS-CCCCCTTCCEEECTTSCCSCC-CTTS--CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCS-SC
T ss_pred CCCcc-CCh-hhcccccccEEECCCCCcccc-cchh--cCCceEEECCCCChhhhc----ccCChhcEEECCCCccC-cC
Confidence 88873 332 566788999999999998743 3322 368999999999988642 46789999999999988 56
Q ss_pred CCcccCCCcCceeecCCccccccCCCCC-CCCCccccCCCCCCCCCCCC
Q 008876 497 PSEYLKLKKLKELDLSHNLLVGEIPAGK-PLSDFPESSFSGNRGLCGKP 544 (550)
Q Consensus 497 ~~~~~~l~~L~~L~l~~n~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~ 544 (550)
|. ...+++|++|++++|.+++..|..+ .+++++++++++|||.|+|+
T Consensus 467 p~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 467 PD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 514 (549)
T ss_dssp CC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred CC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence 65 4678999999999999988776643 47889999999999999986
No 14
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=1.2e-42 Score=357.78 Aligned_cols=471 Identities=22% Similarity=0.241 Sum_probs=307.9
Q ss_pred CCCccccccCcccEeeCCCCCCCCcCCCCCccCCCCCcEEeCCCccCCCCCchhhhhccCCcEEEcCCCcCCCccccccc
Q 008876 4 SLSPSISLLTSLEVLDLGGLVDLTGIIPPSIGCLQNLKKLYLYGNKLSGSVPESISKLLKLEELHLHENRLSGTLSSSLG 83 (550)
Q Consensus 4 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~ 83 (550)
.+|..+. ++|++|++++| .+.+..|..+.++++|++|++++|.+++..+..|.++++|++|++++|.+....+..+.
T Consensus 19 ~ip~~~~--~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 95 (549)
T 2z81_A 19 SIPSGLT--AAMKSLDLSFN-KITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFG 95 (549)
T ss_dssp SCCSCCC--TTCCEEECCSS-CCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHT
T ss_pred cccccCC--CCccEEECcCC-ccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhc
Confidence 4565553 79999999994 57767788899999999999999999977788999999999999999999877777799
Q ss_pred CCcccchhhccccccCcc-CchhccCCCCCCEEEccccc-CccccchhhcCCCCcCeEeccCccccCcCCcccCCCCCCC
Q 008876 84 NLKNINQLLMHTNQFTGV-IPDSFTNLTNLVRLDLHCNY-LNGYIPEKIGELQLLEQLDFSNNLLRGKLPPSLCNLTVIS 161 (550)
Q Consensus 84 ~l~~L~~L~l~~~~~~~~-~~~~l~~l~~L~~L~l~~~~-~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~ 161 (550)
.+++|++|++++|.+... .+..+..+++|++|++++|. +....+..+..+++|++|++++|.+.+..+..+..+++|+
T Consensus 96 ~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 175 (549)
T 2z81_A 96 PLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIH 175 (549)
T ss_dssp TCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEE
T ss_pred cCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCc
Confidence 999999999999998753 45678999999999999997 4544456899999999999999999888888999999999
Q ss_pred EEEccCCcccccccCCCCCCCCCCccEEEcCCCcccccC---CCCccCCCCCcEEEcccCcccCcch----hhccCCCCC
Q 008876 162 VLYLDNNKLEGAIPFPSSPGQMPSLGFLRLQDNNLTGKI---PPTFGYLASLRRVSLANNKLEGAIP----TSLGNLQDL 234 (550)
Q Consensus 162 ~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~---~~~l~~~~~L~~L~l~~~~~~~~~~----~~l~~~~~L 234 (550)
+|+++.+....... ..+..+++|++|++++|.+.... ......+++|+.|+++++.+.+..+ ..+..+++|
T Consensus 176 ~L~l~~n~~~~~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L 253 (549)
T 2z81_A 176 HLTLHLSESAFLLE--IFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILEL 253 (549)
T ss_dssp EEEEECSBSTTHHH--HHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTC
T ss_pred eEecccCcccccch--hhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccc
Confidence 99999887643221 12345789999999999887531 2233457789999998887764433 234567888
Q ss_pred cEEEecCccccCC------CcccccCCCcccEEEccCCcccCCC-----CCcccCCCCccEEEccCCcccCCccchhc-c
Q 008876 235 TELYLNGNQLSGQ------IPKSISQLSQLIFLSISRNQIEGPL-----PSGMFSLQNLQTLDLSFNLLNLSSIPMWM-A 302 (550)
Q Consensus 235 ~~L~l~~~~~~~~------~~~~l~~~~~L~~L~l~~~~~~~~~-----~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~ 302 (550)
+.+++++|.+... ....+..+++++.+.+.++.+.... .......++|+.+++++|.+. .++..+ .
T Consensus 254 ~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~--~ip~~~~~ 331 (549)
T 2z81_A 254 SEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF--LVPCSFSQ 331 (549)
T ss_dssp CEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC--CCCHHHHH
T ss_pred cccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccc--cCCHHHHh
Confidence 8888888876532 1122345566677776666544211 000112345666666665432 334333 3
Q ss_pred cCCCCcEEEeecccccccCCcc--ccCCCCCccEEEcccccCCCCch--hhhhccccccEEEccCCeeeccCCccccCCC
Q 008876 303 ELPSLSRVYLAGCGIKGKIPEF--FRTTPSPLQELDLSVNHLSGSIP--AWIGSLTQLYSLNLSRNSLVSSIPETITNLQ 378 (550)
Q Consensus 303 ~~~~L~~L~l~~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~ 378 (550)
.+++|+.|++++|.+.+..+.. .....++|+.|++++|.+++... ..+..+++|+.|++++|.+. ..+..+..++
T Consensus 332 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~ 410 (549)
T 2z81_A 332 HLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPE 410 (549)
T ss_dssp HCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCT
T ss_pred cCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhcccc
Confidence 4556666666655554322110 01112235555555555543321 23444555555555555554 2233344445
Q ss_pred CCcEEEccCCccccccccccccCCCCCCCCeEEEeccCCCCCCCCCCCCCCCcccccEEeccCCcccCcCCccccccccc
Q 008876 379 DLVLLDLHSNKLTGSISQVFKIGQRFPDGSLTYIDLSDNGFSSGIELTGGGGQTGIRFLNLSRNVLEGQIPVSVGRLRSL 458 (550)
Q Consensus 379 ~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L 458 (550)
+|++|++++|+++..+.. .+++|++|++++|.+++.. ..+++|
T Consensus 411 ~L~~L~Ls~N~l~~l~~~---------------------------------~~~~L~~L~Ls~N~l~~~~----~~l~~L 453 (549)
T 2z81_A 411 KMRFLNLSSTGIRVVKTC---------------------------------IPQTLEVLDVSNNNLDSFS----LFLPRL 453 (549)
T ss_dssp TCCEEECTTSCCSCCCTT---------------------------------SCTTCSEEECCSSCCSCCC----CCCTTC
T ss_pred cccEEECCCCCcccccch---------------------------------hcCCceEEECCCCChhhhc----ccCChh
Confidence 555555555544322111 1245566666666555332 345666
Q ss_pred ceeeCCCCccceeCCCcCCCCCCCcEEECcCccccccCCCcccCCCcCceeecCCccccccCC
Q 008876 459 RSLDLSYNKLGYVLPGSLANESSLETLKLQNNRFTGRIPSEYLKLKKLKELDLSHNLLVGEIP 521 (550)
Q Consensus 459 ~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ 521 (550)
++|++++|+++. +|. ...+++|++|++++|.+++..|..+..+++|+.|++++|++.+..|
T Consensus 454 ~~L~Ls~N~l~~-ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 454 QELYISRNKLKT-LPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 514 (549)
T ss_dssp CEEECCSSCCSS-CCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred cEEECCCCccCc-CCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence 666666666663 333 3346666666666666665555556666666666666666665544
No 15
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=9.4e-41 Score=350.42 Aligned_cols=496 Identities=23% Similarity=0.210 Sum_probs=331.8
Q ss_pred CCCCCccCCCCCcEEeCCCccCCCCCchhhhhccCCcEEEcCCCcCCCcccccccCCcccchhhccccccCccCchhccC
Q 008876 29 IIPPSIGCLQNLKKLYLYGNKLSGSVPESISKLLKLEELHLHENRLSGTLSSSLGNLKNINQLLMHTNQFTGVIPDSFTN 108 (550)
Q Consensus 29 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~ 108 (550)
.+|..+- +++++|++++|.++...+.+|.++++|++|++++|.+..+.+.+|.++++|++|++++|++....+.+|.+
T Consensus 45 ~vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~ 122 (635)
T 4g8a_A 45 KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSG 122 (635)
T ss_dssp SCCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTT
T ss_pred ccCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcC
Confidence 4554432 35777777777777555566777777777777777776555666777777777777777777655566777
Q ss_pred CCCCCEEEcccccCccccchhhcCCCCcCeEeccCccccC-cCCcccCCCCCCCEEEccCCcccccccCCCCCCCC----
Q 008876 109 LTNLVRLDLHCNYLNGYIPEKIGELQLLEQLDFSNNLLRG-KLPPSLCNLTVISVLYLDNNKLEGAIPFPSSPGQM---- 183 (550)
Q Consensus 109 l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~---- 183 (550)
+++|++|++++|.++.+.+..|+.+++|++|++++|.+.. ..+..+..+++|++|++++|.+.+..+ ..+..+
T Consensus 123 L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~--~~l~~L~~l~ 200 (635)
T 4g8a_A 123 LSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYC--TDLRVLHQMP 200 (635)
T ss_dssp CTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECG--GGGHHHHTCT
T ss_pred CCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccccccc--ccccchhhhh
Confidence 7777777777777776655667777777777777777653 345566677777777777776654322 122211
Q ss_pred CCccEEEcCCCcccccCCCCccCCCCCcEEEcccCcccC-cchhhccCCCCCcEEEecCcccc------C----------
Q 008876 184 PSLGFLRLQDNNLTGKIPPTFGYLASLRRVSLANNKLEG-AIPTSLGNLQDLTELYLNGNQLS------G---------- 246 (550)
Q Consensus 184 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~-~~~~~l~~~~~L~~L~l~~~~~~------~---------- 246 (550)
.....++++.+.+....+..+ ....++.+.+.++.... .....+..++.++...+..+... .
T Consensus 201 ~~~~~~~ls~n~l~~i~~~~~-~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~ 279 (635)
T 4g8a_A 201 LLNLSLDLSLNPMNFIQPGAF-KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLC 279 (635)
T ss_dssp TCCCEEECTTCCCCEECTTTT-TTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGG
T ss_pred hhhhhhhcccCcccccCcccc-cchhhhhhhhhcccccccccchhhcCCccccccccccccccccccccccccccccccc
Confidence 123356666666553333322 23345556655543321 12223444444444433221110 0
Q ss_pred -----------------CCcccccCCCcccEEEccCCcccCCCCCcccCCCCccEEEccCCcccCCccchhcccCCCCcE
Q 008876 247 -----------------QIPKSISQLSQLIFLSISRNQIEGPLPSGMFSLQNLQTLDLSFNLLNLSSIPMWMAELPSLSR 309 (550)
Q Consensus 247 -----------------~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~ 309 (550)
.....+....+++.+.+.++.+... ..+.....++.|++.++.+... ....++.|+.
T Consensus 280 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~----~~~~l~~L~~ 353 (635)
T 4g8a_A 280 NLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERV--KDFSYNFGWQHLELVNCKFGQF----PTLKLKSLKR 353 (635)
T ss_dssp GSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEEC--GGGGSCCCCSEEEEESCEESSC----CCCBCTTCCE
T ss_pred chhhhhhhhhhhcccccchhhhhhhhcccccccccccccccc--cccccchhhhhhhcccccccCc----Ccccchhhhh
Confidence 0111122334455555555544321 1233345667777766643322 1124566777
Q ss_pred EEeecccccccCCccccCCCCCccEEEcccccCCC--CchhhhhccccccEEEccCCeeeccCCccccCCCCCcEEEccC
Q 008876 310 VYLAGCGIKGKIPEFFRTTPSPLQELDLSVNHLSG--SIPAWIGSLTQLYSLNLSRNSLVSSIPETITNLQDLVLLDLHS 387 (550)
Q Consensus 310 L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~ 387 (550)
+.+..+....... ... .++++.++++.+.+.. .....+....+++.+++..+..... ...+..+++|+.+++.+
T Consensus 354 l~l~~n~~~~~~~--~~~-l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~-~~~~~~l~~L~~l~l~~ 429 (635)
T 4g8a_A 354 LTFTSNKGGNAFS--EVD-LPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITM-SSNFLGLEQLEHLDFQH 429 (635)
T ss_dssp EEEESCCSCCBCC--CCB-CTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEE-CSCCTTCTTCCEEECTT
T ss_pred cccccccCCCCcc--ccc-ccccccchhhccccccccccccchhhhhhhhhhhccccccccc-cccccccccccchhhhh
Confidence 7776665443221 112 3348899998887752 2344556678899999998887643 44566788999999998
Q ss_pred Ccccccccc-ccccCCCCCCCCeEEEeccCCCCCCCCCCCCCCCcccccEEeccCCccc-CcCCcccccccccceeeCCC
Q 008876 388 NKLTGSISQ-VFKIGQRFPDGSLTYIDLSDNGFSSGIELTGGGGQTGIRFLNLSRNVLE-GQIPVSVGRLRSLRSLDLSY 465 (550)
Q Consensus 388 ~~i~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~-~~~~~~l~~l~~L~~L~l~~ 465 (550)
++....... .+.. ...++.+++++|.+....+ ..+..++++++|++++|.+. ...+..+..+++|+.|+|++
T Consensus 430 ~~~~~~~~~~~~~~-----l~~l~~l~ls~n~l~~~~~-~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~ 503 (635)
T 4g8a_A 430 SNLKQMSEFSVFLS-----LRNLIYLDISHTHTRVAFN-GIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ 503 (635)
T ss_dssp SEEESTTSSCTTTT-----CTTCCEEECTTSCCEECCT-TTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTT
T ss_pred cccccccccccccc-----ccccccccccccccccccc-cccccchhhhhhhhhhcccccccCchhhhhccccCEEECCC
Confidence 876544332 2222 2789999999999876444 36788999999999999754 45678899999999999999
Q ss_pred CccceeCCCcCCCCCCCcEEECcCccccccCCCcccCCCcCceeecCCccccccCCCCCC-C-CCccccCCCCCCCCCCC
Q 008876 466 NKLGYVLPGSLANESSLETLKLQNNRFTGRIPSEYLKLKKLKELDLSHNLLVGEIPAGKP-L-SDFPESSFSGNRGLCGK 543 (550)
Q Consensus 466 n~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~-~-~~~~~l~~~~~~~~~~~ 543 (550)
|+++.+.|..|.++++|++|+|++|.++...+..|..+++|+.|++++|.+++..|..+. + .+++++++++|||.|+|
T Consensus 504 N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C 583 (635)
T 4g8a_A 504 CQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTC 583 (635)
T ss_dssp SCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSG
T ss_pred CccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccC
Confidence 999999999999999999999999999988888899999999999999999998887765 3 68999999999999999
Q ss_pred CC
Q 008876 544 PL 545 (550)
Q Consensus 544 ~~ 545 (550)
++
T Consensus 584 ~~ 585 (635)
T 4g8a_A 584 EH 585 (635)
T ss_dssp GG
T ss_pred Cc
Confidence 86
No 16
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=8.6e-42 Score=354.73 Aligned_cols=466 Identities=20% Similarity=0.240 Sum_probs=320.0
Q ss_pred CCCcEEeCCCccCCCCCchhhhhccCCcEEEcCCCcCC------C------cccccccCCcccchhhccccccCccCchh
Q 008876 38 QNLKKLYLYGNKLSGSVPESISKLLKLEELHLHENRLS------G------TLSSSLGNLKNINQLLMHTNQFTGVIPDS 105 (550)
Q Consensus 38 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~------~------~~~~~~~~l~~L~~L~l~~~~~~~~~~~~ 105 (550)
.+++.|+++++.+.+.+|..+.++++|++|++++|.+. . ..|... +..|+ ++++.+.+....+..
T Consensus 81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~--~~~l~-l~l~~~~l~~~~~~~ 157 (636)
T 4eco_A 81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ--KQKMR-MHYQKTFVDYDPRED 157 (636)
T ss_dssp CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH--HHHHH-THHHHHHTCCCGGGG
T ss_pred CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHH--HHHHH-hhHHHhhhccCchhh
Confidence 46788888888888788888888888888888887541 0 112111 44555 666666555444333
Q ss_pred ccC-CCCCCEEEcccccCccccchhhcCCCCcCeEecc--CccccCcCCcccCCCCCCCEEEccCCccccc---------
Q 008876 106 FTN-LTNLVRLDLHCNYLNGYIPEKIGELQLLEQLDFS--NNLLRGKLPPSLCNLTVISVLYLDNNKLEGA--------- 173 (550)
Q Consensus 106 l~~-l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~--~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~--------- 173 (550)
+.. +.++..+++....+. ......++.+.+. .|.+++ +|..+.++++|++|++++|.+.+.
T Consensus 158 ~~~~~~~l~~~~l~~~~~~------~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~ 230 (636)
T 4eco_A 158 FSDLIKDCINSDPQQKSIK------KSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENE 230 (636)
T ss_dssp SCHHHHHHHHHCTTSCCCC------CCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCT
T ss_pred HHHHHHHHhhcCccccccc------cccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCcccccccccccccc
Confidence 321 111111111111110 0111222222222 345554 566666677777777777766542
Q ss_pred ------ccCCCCCC--CCCCccEEEcCCCcccccCCCCccCCCCCcEEEcccCc-ccC-cchhhccCC------CCCcEE
Q 008876 174 ------IPFPSSPG--QMPSLGFLRLQDNNLTGKIPPTFGYLASLRRVSLANNK-LEG-AIPTSLGNL------QDLTEL 237 (550)
Q Consensus 174 ------~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~-~~~~~l~~~------~~L~~L 237 (550)
..++..++ .+++|++|++++|.+....+..++.+++|++|++++|. +.. ..+..++.+ ++|++|
T Consensus 231 ~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L 310 (636)
T 4eco_A 231 NSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQII 310 (636)
T ss_dssp TSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEE
T ss_pred ccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEE
Confidence 00446666 78888888888887777777778888888888888887 665 566666554 788888
Q ss_pred EecCccccCCCcc--cccCCCcccEEEccCCcccCCCCCcccCCCCccEEEccCCcccCCccchhcccCCC-CcEEEeec
Q 008876 238 YLNGNQLSGQIPK--SISQLSQLIFLSISRNQIEGPLPSGMFSLQNLQTLDLSFNLLNLSSIPMWMAELPS-LSRVYLAG 314 (550)
Q Consensus 238 ~l~~~~~~~~~~~--~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~-L~~L~l~~ 314 (550)
++++|.++ ..+. .+..+++|+.|++++|.+...++ .+..+++|+.|++++|.+. .++..+..+++ |+.|++++
T Consensus 311 ~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~--~lp~~l~~l~~~L~~L~Ls~ 386 (636)
T 4eco_A 311 YIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT--EIPANFCGFTEQVENLSFAH 386 (636)
T ss_dssp ECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE--ECCTTSEEECTTCCEEECCS
T ss_pred ECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc--cccHhhhhhcccCcEEEccC
Confidence 88888887 5666 77888888888888888875566 6777788888888888665 56777788888 88888888
Q ss_pred ccccccCCccccCC-CCCccEEEcccccCCCCchhhhh-------ccccccEEEccCCeeeccCCccccCCCCCcEEEcc
Q 008876 315 CGIKGKIPEFFRTT-PSPLQELDLSVNHLSGSIPAWIG-------SLTQLYSLNLSRNSLVSSIPETITNLQDLVLLDLH 386 (550)
Q Consensus 315 ~~~~~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~~~-------~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~ 386 (550)
|.+. ..+..+... ..+|+.|++++|.+.+..+..+. .+++|+.|++++|.+.......+..+++|++|+++
T Consensus 387 N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls 465 (636)
T 4eco_A 387 NKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLM 465 (636)
T ss_dssp SCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECC
T ss_pred CcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECC
Confidence 8877 444443332 23588899998888876666666 67789999999998886666666778899999999
Q ss_pred CCccccccccccccCC--CCCCCCeEEEeccCCCCCCCCCCCCC-CCcccccEEeccCCcccCcCCcccccccccceeeC
Q 008876 387 SNKLTGSISQVFKIGQ--RFPDGSLTYIDLSDNGFSSGIELTGG-GGQTGIRFLNLSRNVLEGQIPVSVGRLRSLRSLDL 463 (550)
Q Consensus 387 ~~~i~~~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l 463 (550)
+|+++..+...+.... ....++|++|++++|.+. .++...+ ..+++|++|++++|.+++ +|..+..+++|++|++
T Consensus 466 ~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~L 543 (636)
T 4eco_A 466 GNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGI 543 (636)
T ss_dssp SSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEEC
T ss_pred CCCCCCcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEEC
Confidence 9988866555544320 000027888888888887 3443222 478889999999998886 6788888899999988
Q ss_pred ------CCCccceeCCCcCCCCCCCcEEECcCccccccCCCcccCCCcCceeecCCccccccCCCC
Q 008876 464 ------SYNKLGYVLPGSLANESSLETLKLQNNRFTGRIPSEYLKLKKLKELDLSHNLLVGEIPAG 523 (550)
Q Consensus 464 ------~~n~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~ 523 (550)
++|++.+.+|..+.++++|++|++++|.+. .+|..+. ++|+.|++++|++...-+.+
T Consensus 544 s~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~~~~~ 606 (636)
T 4eco_A 544 RNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIR-KVNEKIT--PNISVLDIKDNPNISIDLSY 606 (636)
T ss_dssp CSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCC-BCCSCCC--TTCCEEECCSCTTCEEECTT
T ss_pred CCCcccccCcccccChHHHhcCCCCCEEECCCCcCC-ccCHhHh--CcCCEEECcCCCCccccHHh
Confidence 456777788888888889999999999884 6776655 78999999999887544333
No 17
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=2.8e-41 Score=344.79 Aligned_cols=464 Identities=19% Similarity=0.184 Sum_probs=299.9
Q ss_pred cEEeCCCccCCCCCchhhhhccCCcEEEcCCCcCCCcccccccCCcccchhhccccccCccCchhccCCCCCCEEEcccc
Q 008876 41 KKLYLYGNKLSGSVPESISKLLKLEELHLHENRLSGTLSSSLGNLKNINQLLMHTNQFTGVIPDSFTNLTNLVRLDLHCN 120 (550)
Q Consensus 41 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 120 (550)
++++++++.++ .+|..+. ++|++|++++|.+....+..+..+++|++|++++|.+.+..|.+|..+++|++|++++|
T Consensus 3 ~~l~ls~n~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 79 (520)
T 2z7x_B 3 FLVDRSKNGLI-HVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN 79 (520)
T ss_dssp CEEECTTSCCS-SCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS
T ss_pred ceEecCCCCcc-ccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCC
Confidence 67899999988 6776665 79999999999988667778889999999999999988777888889999999999999
Q ss_pred cCccccchhhcCCCCcCeEeccCccccC-cCCcccCCCCCCCEEEccCCcccccccCCCCCCCCCCc--cEEEcCCCcc-
Q 008876 121 YLNGYIPEKIGELQLLEQLDFSNNLLRG-KLPPSLCNLTVISVLYLDNNKLEGAIPFPSSPGQMPSL--GFLRLQDNNL- 196 (550)
Q Consensus 121 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~-~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L--~~L~l~~~~~- 196 (550)
.+.. .+.. .+++|++|++++|.+.. ..|..+..+++|++|++++|.+.+ ..+..+++| +.|++++|.+
T Consensus 80 ~l~~-lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~-----~~~~~l~~L~L~~L~l~~n~l~ 151 (520)
T 2z7x_B 80 KLVK-ISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK-----SSVLPIAHLNISKVLLVLGETY 151 (520)
T ss_dssp CCCE-EECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG-----GGGGGGTTSCEEEEEEEECTTT
T ss_pred ceee-cCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch-----hhccccccceeeEEEeeccccc
Confidence 8874 3433 78899999999988875 356778888888888888887654 224445555 7777777666
Q ss_pred -cccCCCCccCCC-CCcEEEcccCcccCcc-hhhccCCCCCcEEEecCccccCCCcccccCCCcccEEEccCCcccCCCC
Q 008876 197 -TGKIPPTFGYLA-SLRRVSLANNKLEGAI-PTSLGNLQDLTELYLNGNQLSGQIPKSISQLSQLIFLSISRNQIEGPLP 273 (550)
Q Consensus 197 -~~~~~~~l~~~~-~L~~L~l~~~~~~~~~-~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 273 (550)
....+..+..+. ....+++.++.+.... ...+..+++|+.+++++|....... .+...++
T Consensus 152 ~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-----------------~~~~~~~ 214 (520)
T 2z7x_B 152 GEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCS-----------------YFLSILA 214 (520)
T ss_dssp TSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTH-----------------HHHHHHH
T ss_pred ccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccc-----------------eeecchh
Confidence 433444443333 1223334444333221 1123344444444444443000000 0111111
Q ss_pred CcccCCCCccEEEccCCcccCCccchhc--ccCCCCcEEEeecccccccCCcccc----CCCCCccEEEcccccCCCCch
Q 008876 274 SGMFSLQNLQTLDLSFNLLNLSSIPMWM--AELPSLSRVYLAGCGIKGKIPEFFR----TTPSPLQELDLSVNHLSGSIP 347 (550)
Q Consensus 274 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~----~~~~~L~~L~l~~~~~~~~~~ 347 (550)
.+..+++|+.|+++++.+....+.... ...++|+.|++++|.+.+..+..+. ...++|+.++++.+.+ ....
T Consensus 215 -~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~-~~p~ 292 (520)
T 2z7x_B 215 -KLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF-GFPQ 292 (520)
T ss_dssp -GGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC-CSCT
T ss_pred -hhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce-ecch
Confidence 334455555555555543322111111 1134666666666665544444431 2223366666666666 2221
Q ss_pred hhhhcc---ccccEEEccCCeeeccCCccccCCCCCcEEEccCCccccccccccccCCCCCCCCeEEEeccCCCCCCCCC
Q 008876 348 AWIGSL---TQLYSLNLSRNSLVSSIPETITNLQDLVLLDLHSNKLTGSISQVFKIGQRFPDGSLTYIDLSDNGFSSGIE 424 (550)
Q Consensus 348 ~~~~~~---~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 424 (550)
..+..+ .+|+.|++++|.+..... ...+++|++|++++|+++...+..+... ++|++|++++|.+.+...
T Consensus 293 ~~~~~~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~~~~~~~~~l-----~~L~~L~L~~N~l~~l~~ 365 (520)
T 2z7x_B 293 SYIYEIFSNMNIKNFTVSGTRMVHMLC--PSKISPFLHLDFSNNLLTDTVFENCGHL-----TELETLILQMNQLKELSK 365 (520)
T ss_dssp HHHHHHHHTCCCSEEEEESSCCCCCCC--CSSCCCCCEEECCSSCCCTTTTTTCCCC-----SSCCEEECCSSCCCBHHH
T ss_pred hhhhcccccCceeEEEcCCCccccccc--hhhCCcccEEEeECCccChhhhhhhccC-----CCCCEEEccCCccCcccc
Confidence 233222 457777777776653321 2466677777777777765444443322 577777777777664111
Q ss_pred -CCCCCCcccccEEeccCCcccCcCCc-ccccccccceeeCCCCccceeCCCcCCCCCCCcEEECcCccccccCCCcccC
Q 008876 425 -LTGGGGQTGIRFLNLSRNVLEGQIPV-SVGRLRSLRSLDLSYNKLGYVLPGSLANESSLETLKLQNNRFTGRIPSEYLK 502 (550)
Q Consensus 425 -~~~~~~~~~L~~L~l~~~~i~~~~~~-~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~ 502 (550)
...+..+++|++|++++|.+++.++. .+..+++|++|++++|.+++..+..+. ++|++|++++|.+. .+|..+..
T Consensus 366 ~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~ 442 (520)
T 2z7x_B 366 IAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVK 442 (520)
T ss_dssp HHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGG
T ss_pred chHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhc
Confidence 11356778888889988888863443 478888999999999998776666554 78999999999988 67777779
Q ss_pred CCcCceeecCCccccccCCCC--CCCCCccccCCCCCCCCCCCCC
Q 008876 503 LKKLKELDLSHNLLVGEIPAG--KPLSDFPESSFSGNRGLCGKPL 545 (550)
Q Consensus 503 l~~L~~L~l~~n~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~~ 545 (550)
+++|++|++++|.+. .+|.. ..++.++++++++||+.|+|++
T Consensus 443 l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~c~~ 486 (520)
T 2z7x_B 443 LEALQELNVASNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCPR 486 (520)
T ss_dssp CTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHHH
T ss_pred CCCCCEEECCCCcCC-ccCHHHhccCCcccEEECcCCCCcccCCc
Confidence 999999999999987 56654 3478888999999999999875
No 18
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=2.3e-40 Score=338.15 Aligned_cols=454 Identities=21% Similarity=0.241 Sum_probs=309.3
Q ss_pred cEeeCCCCCCCCcCCCCCccCCCCCcEEeCCCccCCCCCchhhhhccCCcEEEcCCCcCCCcccccccCCcccchhhccc
Q 008876 16 EVLDLGGLVDLTGIIPPSIGCLQNLKKLYLYGNKLSGSVPESISKLLKLEELHLHENRLSGTLSSSLGNLKNINQLLMHT 95 (550)
Q Consensus 16 ~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 95 (550)
++|+++++ .+. .+|..+. ++|++|++++|.+++..+..|.++++|++|++++|.+....|..|..+++|++|++++
T Consensus 3 ~~l~ls~n-~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~ 78 (520)
T 2z7x_B 3 FLVDRSKN-GLI-HVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSH 78 (520)
T ss_dssp CEEECTTS-CCS-SCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCS
T ss_pred ceEecCCC-Ccc-ccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCC
Confidence 67899984 555 6787666 8999999999999977778899999999999999999877788999999999999999
Q ss_pred cccCccCchhccCCCCCCEEEcccccCccc-cchhhcCCCCcCeEeccCccccCcCCcccCCCCCC--CEEEccCCcccc
Q 008876 96 NQFTGVIPDSFTNLTNLVRLDLHCNYLNGY-IPEKIGELQLLEQLDFSNNLLRGKLPPSLCNLTVI--SVLYLDNNKLEG 172 (550)
Q Consensus 96 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L--~~L~l~~~~~~~ 172 (550)
|.+. .+|.. .+++|++|++++|.+... .+..++.+++|++|++++|.+.. ..+..+++| +.|++++|.+.+
T Consensus 79 N~l~-~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~ 152 (520)
T 2z7x_B 79 NKLV-KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYG 152 (520)
T ss_dssp SCCC-EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTT
T ss_pred Ccee-ecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeecccccc
Confidence 9988 45544 889999999999998864 56889999999999999998874 346667777 999999998732
Q ss_pred cccCCCCCCCCC-CccEEEcCCCccccc-CCCCccCCCCCcEEEcccCc-------ccCcchhhccCCCCCcEEEecCcc
Q 008876 173 AIPFPSSPGQMP-SLGFLRLQDNNLTGK-IPPTFGYLASLRRVSLANNK-------LEGAIPTSLGNLQDLTELYLNGNQ 243 (550)
Q Consensus 173 ~~~~~~~~~~~~-~L~~L~l~~~~~~~~-~~~~l~~~~~L~~L~l~~~~-------~~~~~~~~l~~~~~L~~L~l~~~~ 243 (550)
....+..+..+. ....++++++.+... ....+..+++|+.+++++|. +.+..+ .+..+++|++|+++++.
T Consensus 153 ~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~ 231 (520)
T 2z7x_B 153 EKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIE 231 (520)
T ss_dssp SSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEE
T ss_pred cccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhccccccc
Confidence 222234444444 234567777766533 33456788999999999886 443333 67889999999999887
Q ss_pred ccCCCcccc---cCCCcccEEEccCCcccCCCCCcc-----cCCCCccEEEccCCcccCCccc-hhcccC---CCCcEEE
Q 008876 244 LSGQIPKSI---SQLSQLIFLSISRNQIEGPLPSGM-----FSLQNLQTLDLSFNLLNLSSIP-MWMAEL---PSLSRVY 311 (550)
Q Consensus 244 ~~~~~~~~l---~~~~~L~~L~l~~~~~~~~~~~~~-----~~~~~L~~L~l~~~~~~~~~~~-~~~~~~---~~L~~L~ 311 (550)
+.......+ ...++|+.|++++|.+.+.++..+ ..+++|+.++++++.+ .++ ..+..+ ++|+.|+
T Consensus 232 l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~---~~p~~~~~~~~~~~~L~~L~ 308 (520)
T 2z7x_B 232 TTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF---GFPQSYIYEIFSNMNIKNFT 308 (520)
T ss_dssp EEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC---CSCTHHHHHHHHTCCCSEEE
T ss_pred cCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce---ecchhhhhcccccCceeEEE
Confidence 653221111 124689999999998886677666 6678888888887754 233 222222 5677777
Q ss_pred eecccccccCCccccCCCCCccEEEcccccCCCCchhhhhccccccEEEccCCeeecc--CCccccCCCCCcEEEccCCc
Q 008876 312 LAGCGIKGKIPEFFRTTPSPLQELDLSVNHLSGSIPAWIGSLTQLYSLNLSRNSLVSS--IPETITNLQDLVLLDLHSNK 389 (550)
Q Consensus 312 l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~l~~~~~L~~L~l~~~~ 389 (550)
++++.+..... ....++|++|++++|.+.+..+..+..+++|+.|++++|.+.+. .+..+..+++|++|++++|+
T Consensus 309 l~~n~l~~~~~---~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~ 385 (520)
T 2z7x_B 309 VSGTRMVHMLC---PSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNS 385 (520)
T ss_dssp EESSCCCCCCC---CSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSC
T ss_pred cCCCccccccc---hhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCc
Confidence 77776543221 12223366666666666554455555556666666666655531 22334455555555555555
Q ss_pred cccccccccccCCCCCCCCeEEEeccCCCCCCCCCCCCCCCcccccEEeccCCcccCcCCcccccccccceeeCCCCccc
Q 008876 390 LTGSISQVFKIGQRFPDGSLTYIDLSDNGFSSGIELTGGGGQTGIRFLNLSRNVLEGQIPVSVGRLRSLRSLDLSYNKLG 469 (550)
Q Consensus 390 i~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~i~ 469 (550)
+. +.++...+..+++|++|++++|.+++..+..+. ++|+.|++++|+++
T Consensus 386 l~-----------------------------~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~ 434 (520)
T 2z7x_B 386 VS-----------------------------YDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK 434 (520)
T ss_dssp CB-----------------------------CCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC
T ss_pred CC-----------------------------cccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc
Confidence 54 333333344556666666666666544444432 56777777777776
Q ss_pred eeCCCcCCCCCCCcEEECcCccccccCCCc-ccCCCcCceeecCCcccccc
Q 008876 470 YVLPGSLANESSLETLKLQNNRFTGRIPSE-YLKLKKLKELDLSHNLLVGE 519 (550)
Q Consensus 470 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~l~~L~~L~l~~n~~~~~ 519 (550)
.+|..+.++++|++|++++|.++ .+|.. +..+++|++|++++|++.+.
T Consensus 435 -~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~ 483 (520)
T 2z7x_B 435 -SIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCS 483 (520)
T ss_dssp -CCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred -ccchhhhcCCCCCEEECCCCcCC-ccCHHHhccCCcccEEECcCCCCccc
Confidence 45555556777777777777776 34443 66677777777777777654
No 19
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=2.8e-40 Score=343.35 Aligned_cols=477 Identities=19% Similarity=0.224 Sum_probs=313.7
Q ss_pred CcccEeeCCCCCCCCcCCCCCccCCCCCcEEeCCCccC------CC------CCchhhhhccCCcEEEcCCCcCCCcccc
Q 008876 13 TSLEVLDLGGLVDLTGIIPPSIGCLQNLKKLYLYGNKL------SG------SVPESISKLLKLEELHLHENRLSGTLSS 80 (550)
Q Consensus 13 ~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~------~~------~~~~~~~~l~~L~~L~l~~~~~~~~~~~ 80 (550)
.+++.|++++ ..+.+.+|++++++++|++|++++|.+ .+ .+|... +..|+ ++++.+.+....+.
T Consensus 81 ~~V~~L~L~~-~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~--~~~l~-l~l~~~~l~~~~~~ 156 (636)
T 4eco_A 81 GRVTGLSLEG-FGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ--KQKMR-MHYQKTFVDYDPRE 156 (636)
T ss_dssp CCEEEEECTT-SCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH--HHHHH-THHHHHHTCCCGGG
T ss_pred CCEEEEEecC-cccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHH--HHHHH-hhHHHhhhccCchh
Confidence 5799999999 567888999999999999999999965 11 233333 45666 77777666544454
Q ss_pred cccC-CcccchhhccccccCccCchhccCCCCCCEEEcc--cccCccccchhhcCCCCcCeEeccCccccCc--------
Q 008876 81 SLGN-LKNINQLLMHTNQFTGVIPDSFTNLTNLVRLDLH--CNYLNGYIPEKIGELQLLEQLDFSNNLLRGK-------- 149 (550)
Q Consensus 81 ~~~~-l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~--~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-------- 149 (550)
.+.. +..+..+++....+.. .....++.+.+. .|.++. +|..+.++++|++|++++|.+.+.
T Consensus 157 ~~~~~~~~l~~~~l~~~~~~~------~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~ 229 (636)
T 4eco_A 157 DFSDLIKDCINSDPQQKSIKK------SSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWEN 229 (636)
T ss_dssp GSCHHHHHHHHHCTTSCCCCC------CCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSC
T ss_pred hHHHHHHHHhhcCcccccccc------ccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccc
Confidence 4431 2233333333211110 011112211111 233333 444555555555555555555432
Q ss_pred ---------CCcccC--CCCCCCEEEccCCcccccccCCCCCCCCCCccEEEcCCCc-ccc-cCCCCccCC------CCC
Q 008876 150 ---------LPPSLC--NLTVISVLYLDNNKLEGAIPFPSSPGQMPSLGFLRLQDNN-LTG-KIPPTFGYL------ASL 210 (550)
Q Consensus 150 ---------~~~~l~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~-~~~~~l~~~------~~L 210 (550)
.|..+. ++++|++|++++|.+.+..+ ..+..+++|++|++++|. +.. ..+..+..+ ++|
T Consensus 230 ~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p--~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L 307 (636)
T 4eco_A 230 ENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLP--TFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKI 307 (636)
T ss_dssp TTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCC--TTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTC
T ss_pred cccchhcccCchhhhhcccCCCCEEEecCCcCCccCh--HHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCC
Confidence 555555 66666666666666554332 556666666666666665 543 344444443 677
Q ss_pred cEEEcccCcccCcchh--hccCCCCCcEEEecCccccCCCcccccCCCcccEEEccCCcccCCCCCcccCCCC-ccEEEc
Q 008876 211 RRVSLANNKLEGAIPT--SLGNLQDLTELYLNGNQLSGQIPKSISQLSQLIFLSISRNQIEGPLPSGMFSLQN-LQTLDL 287 (550)
Q Consensus 211 ~~L~l~~~~~~~~~~~--~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~-L~~L~l 287 (550)
++|++++|.+. .++. .++.+++|++|++++|.+....+ .+..+++|+.|++++|.+. .++..+..+++ |+.|++
T Consensus 308 ~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~L 384 (636)
T 4eco_A 308 QIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSF 384 (636)
T ss_dssp CEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEEC
T ss_pred CEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEc
Confidence 77777777776 5555 67777777777777777663444 5666777777777777777 56666666777 777887
Q ss_pred cCCcccCCccchhcccC--CCCcEEEeecccccccCCcccc-------CCCCCccEEEcccccCCCCchhhhhccccccE
Q 008876 288 SFNLLNLSSIPMWMAEL--PSLSRVYLAGCGIKGKIPEFFR-------TTPSPLQELDLSVNHLSGSIPAWIGSLTQLYS 358 (550)
Q Consensus 288 ~~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~~~-------~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 358 (550)
++|.++ .++..+... ++|+.|++++|.+.+..+..+. .. .+|+.|++++|.++......+..+++|+.
T Consensus 385 s~N~l~--~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~-~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~ 461 (636)
T 4eco_A 385 AHNKLK--YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKG-INVSSINLSNNQISKFPKELFSTGSPLSS 461 (636)
T ss_dssp CSSCCS--SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCC-CCEEEEECCSSCCCSCCTHHHHTTCCCSE
T ss_pred cCCcCc--ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccC-CCCCEEECcCCccCcCCHHHHccCCCCCE
Confidence 777655 455555443 3778888888777766555444 33 34899999999988666666777899999
Q ss_pred EEccCCeeeccCCccccCCC-------CCcEEEccCCccccccccccccCCCCCCCCeEEEeccCCCCCCCCCCCCCCCc
Q 008876 359 LNLSRNSLVSSIPETITNLQ-------DLVLLDLHSNKLTGSISQVFKIGQRFPDGSLTYIDLSDNGFSSGIELTGGGGQ 431 (550)
Q Consensus 359 L~l~~~~~~~~~~~~l~~~~-------~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 431 (550)
|++++|.+.......+.... +|++|++++|+++..+...+.. ..++|++|++++|.+.+ ++. .+..+
T Consensus 462 L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~----~l~~L~~L~Ls~N~l~~-ip~-~~~~l 535 (636)
T 4eco_A 462 INLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRAT----TLPYLVGIDLSYNSFSK-FPT-QPLNS 535 (636)
T ss_dssp EECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGGGSTT----TCTTCCEEECCSSCCSS-CCC-GGGGC
T ss_pred EECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCCccChhhhhc----cCCCcCEEECCCCCCCC-cCh-hhhcC
Confidence 99999998855554444333 8999999999988554333200 12789999999999987 443 56689
Q ss_pred ccccEEec------cCCcccCcCCcccccccccceeeCCCCccceeCCCcCCCCCCCcEEECcCccccccCCCccc----
Q 008876 432 TGIRFLNL------SRNVLEGQIPVSVGRLRSLRSLDLSYNKLGYVLPGSLANESSLETLKLQNNRFTGRIPSEYL---- 501 (550)
Q Consensus 432 ~~L~~L~l------~~~~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~---- 501 (550)
++|++|++ ++|.+.+..|..+..+++|++|++++|+++ .+|..+. ++|++|++++|++.......+.
T Consensus 536 ~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~~~~~~~~~~~ 612 (636)
T 4eco_A 536 STLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIR-KVNEKIT--PNISVLDIKDNPNISIDLSYVCPYIE 612 (636)
T ss_dssp SSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCC-BCCSCCC--TTCCEEECCSCTTCEEECTTTHHHHH
T ss_pred CCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcCC-ccCHhHh--CcCCEEECcCCCCccccHHhcchhhh
Confidence 99999999 567788889999999999999999999996 5676665 8999999999998754433221
Q ss_pred ----CCCcCceeecCCcccc
Q 008876 502 ----KLKKLKELDLSHNLLV 517 (550)
Q Consensus 502 ----~l~~L~~L~l~~n~~~ 517 (550)
.+...+..++.+|+..
T Consensus 613 ~~~~~l~~~~~~~i~~C~~L 632 (636)
T 4eco_A 613 AGMYMLFYDKTQDIRGCDAL 632 (636)
T ss_dssp TTCCEEECCTTSEEESCGGG
T ss_pred cccceeecCCccccCCCccc
Confidence 1233344566666544
No 20
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=2.8e-39 Score=340.78 Aligned_cols=389 Identities=16% Similarity=0.182 Sum_probs=303.7
Q ss_pred ccccCcCCcccCCCCCCCEEEccCCccccc------c---------cCCCCCC--CCCCccEEEcCCCcccccCCCCccC
Q 008876 144 NLLRGKLPPSLCNLTVISVLYLDNNKLEGA------I---------PFPSSPG--QMPSLGFLRLQDNNLTGKIPPTFGY 206 (550)
Q Consensus 144 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~------~---------~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~l~~ 206 (550)
|.+.+ +|..+.++++|+.|++++|.+.+. . .++..++ .+++|+.|++++|.+....|..+..
T Consensus 435 N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~ 513 (876)
T 4ecn_A 435 NRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYD 513 (876)
T ss_dssp CEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGG
T ss_pred Ccccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhC
Confidence 55664 778888999999999999988762 0 1456666 8999999999999888788888999
Q ss_pred CCCCcEEEcccCc-ccC-cchhhccC-------CCCCcEEEecCccccCCCcc--cccCCCcccEEEccCCcccCCCCCc
Q 008876 207 LASLRRVSLANNK-LEG-AIPTSLGN-------LQDLTELYLNGNQLSGQIPK--SISQLSQLIFLSISRNQIEGPLPSG 275 (550)
Q Consensus 207 ~~~L~~L~l~~~~-~~~-~~~~~l~~-------~~~L~~L~l~~~~~~~~~~~--~l~~~~~L~~L~l~~~~~~~~~~~~ 275 (550)
+++|+.|++++|. +.. .+|..+.. +++|++|++++|.+. .++. .+..+++|+.|++++|.+. .++ .
T Consensus 514 L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~ 590 (876)
T 4ecn_A 514 LPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-A 590 (876)
T ss_dssp CSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-C
T ss_pred CCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-h
Confidence 9999999999998 765 45655544 459999999999998 6666 7889999999999999988 666 7
Q ss_pred ccCCCCccEEEccCCcccCCccchhcccCCC-CcEEEeecccccccCCccccCCC-CCccEEEcccccCCCCchhh---h
Q 008876 276 MFSLQNLQTLDLSFNLLNLSSIPMWMAELPS-LSRVYLAGCGIKGKIPEFFRTTP-SPLQELDLSVNHLSGSIPAW---I 350 (550)
Q Consensus 276 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~---~ 350 (550)
+..+++|+.|++++|.+. .++..+..+++ |+.|++++|.+. ..+..+.... .+|+.|++++|.+.+..+.. +
T Consensus 591 ~~~L~~L~~L~Ls~N~l~--~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l 667 (876)
T 4ecn_A 591 FGTNVKLTDLKLDYNQIE--EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSM 667 (876)
T ss_dssp CCTTSEESEEECCSSCCS--CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCT
T ss_pred hcCCCcceEEECcCCccc--cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhh
Confidence 888999999999999766 67778888998 999999999887 4444443332 34999999999987554322 1
Q ss_pred h--ccccccEEEccCCeeeccCCccccCCCCCcEEEccCCccccccccccccCC--CCCCCCeEEEeccCCCCCCCCCCC
Q 008876 351 G--SLTQLYSLNLSRNSLVSSIPETITNLQDLVLLDLHSNKLTGSISQVFKIGQ--RFPDGSLTYIDLSDNGFSSGIELT 426 (550)
Q Consensus 351 ~--~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~ 426 (550)
. ..++|+.|++++|.+...+...+..+++|+.|++++|++...+...+.... ....++|+.|++++|.+. .++..
T Consensus 668 ~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~ 746 (876)
T 4ecn_A 668 DDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDD 746 (876)
T ss_dssp TTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGG
T ss_pred ccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCc-cchHH
Confidence 2 345899999999999865555566889999999999999866555443220 000128999999999988 34442
Q ss_pred CC-CCcccccEEeccCCcccCcCCcccccccccceeeCCC------CccceeCCCcCCCCCCCcEEECcCccccccCCCc
Q 008876 427 GG-GGQTGIRFLNLSRNVLEGQIPVSVGRLRSLRSLDLSY------NKLGYVLPGSLANESSLETLKLQNNRFTGRIPSE 499 (550)
Q Consensus 427 ~~-~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~------n~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~ 499 (550)
.. ..+++|+.|++++|.+++ +|..+..+++|+.|+|++ |.+...+|..+.++++|++|++++|.+ +.+|..
T Consensus 747 l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~ 824 (876)
T 4ecn_A 747 FRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEK 824 (876)
T ss_dssp GSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSC
T ss_pred hhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHh
Confidence 32 488999999999999996 688888999999999976 777888899999999999999999999 477877
Q ss_pred ccCCCcCceeecCCccccccCCCCCC-CCCccccCCCCCCCCC--CCC
Q 008876 500 YLKLKKLKELDLSHNLLVGEIPAGKP-LSDFPESSFSGNRGLC--GKP 544 (550)
Q Consensus 500 ~~~l~~L~~L~l~~n~~~~~~~~~~~-~~~~~~l~~~~~~~~~--~~~ 544 (550)
+. ++|+.|++++|++...-+..++ ........+.+|++.+ +|+
T Consensus 825 l~--~~L~~LdLs~N~l~~i~~~~~~~~~~~~~~~L~~n~~~~I~gC~ 870 (876)
T 4ecn_A 825 LT--PQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQDIRGCD 870 (876)
T ss_dssp CC--SSSCEEECCSCTTCEEECGGGHHHHHTTCCEEECCTTSEEESCG
T ss_pred hc--CCCCEEECCCCCCCccChHHccccccchheeecCCCccccCCCC
Confidence 55 7999999999999876655544 2234456666676665 775
No 21
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=1.7e-38 Score=326.81 Aligned_cols=464 Identities=18% Similarity=0.150 Sum_probs=271.7
Q ss_pred cCCCCCcEEeCCCccCCCCCchhhhhccCCcEEEcCCCcCCCcccccccCCcccchhhccccccCccCchhccCCCCCCE
Q 008876 35 GCLQNLKKLYLYGNKLSGSVPESISKLLKLEELHLHENRLSGTLSSSLGNLKNINQLLMHTNQFTGVIPDSFTNLTNLVR 114 (550)
Q Consensus 35 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~ 114 (550)
..+...++++++++.++ .+|..+. ++|++|++++|.+....+..+..+++|++|++++|.+....|.+|.++++|++
T Consensus 28 ~~~~~~~~l~ls~~~L~-~ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 104 (562)
T 3a79_B 28 FSNELESMVDYSNRNLT-HVPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEY 104 (562)
T ss_dssp -----CCEEECTTSCCC-SCCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCE
T ss_pred cccCCCcEEEcCCCCCc-cCCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCE
Confidence 34455688999999888 5676554 78999999999888666778888999999999999888777888888899999
Q ss_pred EEcccccCccccchhhcCCCCcCeEeccCccccCc-CCcccCCCCCCCEEEccCCcccccccCCCCCCCCCCc--cEEEc
Q 008876 115 LDLHCNYLNGYIPEKIGELQLLEQLDFSNNLLRGK-LPPSLCNLTVISVLYLDNNKLEGAIPFPSSPGQMPSL--GFLRL 191 (550)
Q Consensus 115 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L--~~L~l 191 (550)
|++++|.++.+ +.. .+++|++|++++|.+... .|..+.++++|++|++++|.+.. ..+..+++| +.|++
T Consensus 105 L~Ls~N~l~~l-p~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~-----~~~~~l~~L~L~~L~L 176 (562)
T 3a79_B 105 LDVSHNRLQNI-SCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ-----LDLLPVAHLHLSCILL 176 (562)
T ss_dssp EECTTSCCCEE-CSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCT-----TTTGGGTTSCEEEEEE
T ss_pred EECCCCcCCcc-Ccc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCcccc-----CchhhhhhceeeEEEe
Confidence 99998888743 433 788888888888887742 34677888888888888877653 223344444 77777
Q ss_pred CCCcc--cccCCCCccCCC-CCcEEEcccCcccCcch-hhccCCCCCcEEEecCcccc----CCCcccccCCCcccEEEc
Q 008876 192 QDNNL--TGKIPPTFGYLA-SLRRVSLANNKLEGAIP-TSLGNLQDLTELYLNGNQLS----GQIPKSISQLSQLIFLSI 263 (550)
Q Consensus 192 ~~~~~--~~~~~~~l~~~~-~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~----~~~~~~l~~~~~L~~L~l 263 (550)
++|.+ ....+..+..+. ..-.++++++.+....+ ..+..+++|+.+++++|... ......+..++.++.+++
T Consensus 177 ~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L 256 (562)
T 3a79_B 177 DLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTL 256 (562)
T ss_dssp EESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEE
T ss_pred ecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEe
Confidence 77766 444444443332 11133444444332211 12334445555555554210 011122333444444444
Q ss_pred cCCcccCCCCCcccCCCCccEEEccCCcccCCccchh--cccCCCCcEEEeecccccccCCcccc----CCCCCccEEEc
Q 008876 264 SRNQIEGPLPSGMFSLQNLQTLDLSFNLLNLSSIPMW--MAELPSLSRVYLAGCGIKGKIPEFFR----TTPSPLQELDL 337 (550)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~----~~~~~L~~L~l 337 (550)
.++.+. ...+... ....++|++|++++|.+.+..+..+. .....|+.+++
T Consensus 257 ~~~~l~------------------------~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~ 312 (562)
T 3a79_B 257 QHIETT------------------------WKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHV 312 (562)
T ss_dssp EEEEEC------------------------HHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEE
T ss_pred cCCcCc------------------------HHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhc
Confidence 443322 1111100 11123555555555554433333221 11111222233
Q ss_pred ccccCCCCchhhhh---ccccccEEEccCCeeeccCCccccCCCCCcEEEccCCccccccccccccCCCCCCCCeEEEec
Q 008876 338 SVNHLSGSIPAWIG---SLTQLYSLNLSRNSLVSSIPETITNLQDLVLLDLHSNKLTGSISQVFKIGQRFPDGSLTYIDL 414 (550)
Q Consensus 338 ~~~~~~~~~~~~~~---~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~L~~L~l 414 (550)
..+.+ ......+. ...+++.|++++|.+..... ...+++|++|++++|+++...+..+... ++|++|++
T Consensus 313 ~~~~~-~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~~~l-----~~L~~L~L 384 (562)
T 3a79_B 313 KNQVF-LFSKEALYSVFAEMNIKMLSISDTPFIHMVC--PPSPSSFTFLNFTQNVFTDSVFQGCSTL-----KRLQTLIL 384 (562)
T ss_dssp EECCC-SSCHHHHHHHHHTCCCSEEEEESSCCCCCCC--CSSCCCCCEEECCSSCCCTTTTTTCCSC-----SSCCEEEC
T ss_pred cccee-ecChhhhhhhhccCcceEEEccCCCcccccC--ccCCCCceEEECCCCccccchhhhhccc-----CCCCEEEC
Confidence 33333 11111111 12456666666665542211 1355666666666666655433333322 56666666
Q ss_pred cCCCCCCCCC-CCCCCCcccccEEeccCCcccC-cCCcccccccccceeeCCCCccceeCCCcCCCCCCCcEEECcCccc
Q 008876 415 SDNGFSSGIE-LTGGGGQTGIRFLNLSRNVLEG-QIPVSVGRLRSLRSLDLSYNKLGYVLPGSLANESSLETLKLQNNRF 492 (550)
Q Consensus 415 ~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~i~~-~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~~ 492 (550)
++|.+.+... ...+..+++|++|++++|.+++ .....+..+++|++|++++|.+++..+..++ ++|++|++++|.+
T Consensus 385 ~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l 462 (562)
T 3a79_B 385 QRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRI 462 (562)
T ss_dssp CSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCC
T ss_pred CCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcC
Confidence 6666654211 1235667777777777777776 3334567777888888888877765555443 6788888888877
Q ss_pred cccCCCcccCCCcCceeecCCccccccCCCC--CCCCCccccCCCCCCCCCCCCC
Q 008876 493 TGRIPSEYLKLKKLKELDLSHNLLVGEIPAG--KPLSDFPESSFSGNRGLCGKPL 545 (550)
Q Consensus 493 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~~ 545 (550)
. .+|..+..+++|++|++++|.+. .+|.. ..+++++++++++|||.|+|++
T Consensus 463 ~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~c~~ 515 (562)
T 3a79_B 463 M-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNPWDCTCPG 515 (562)
T ss_dssp C-CCCTTTTSSCCCSEEECCSSCCC-CCCTTSTTTCTTCCCEECCSCCBCCCHHH
T ss_pred c-ccChhhcCCCCCCEEECCCCCCC-CCCHHHHhcCCCCCEEEecCCCcCCCcch
Confidence 7 56666667888888888888877 46653 3467777788888888888764
No 22
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=1.9e-38 Score=334.53 Aligned_cols=373 Identities=20% Similarity=0.185 Sum_probs=251.1
Q ss_pred cchhhcCCCCcCeEeccCccccC-----------------cCCcccC--CCCCCCEEEccCCcccccccCCCCCCCCCCc
Q 008876 126 IPEKIGELQLLEQLDFSNNLLRG-----------------KLPPSLC--NLTVISVLYLDNNKLEGAIPFPSSPGQMPSL 186 (550)
Q Consensus 126 ~~~~l~~l~~L~~L~l~~~~~~~-----------------~~~~~l~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 186 (550)
+|..+.++++|+.|++++|.+.+ .+|..+. ++++|+.|++++|.+.+..+ ..+..+++|
T Consensus 440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP--~~l~~L~~L 517 (876)
T 4ecn_A 440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLP--DFLYDLPEL 517 (876)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCC--GGGGGCSSC
T ss_pred hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccCh--HHHhCCCCC
Confidence 34445555555555555555543 2455554 56666666666665544332 445556666
Q ss_pred cEEEcCCCc-ccc-cCCCC-------ccCCCCCcEEEcccCcccCcchh--hccCCCCCcEEEecCccccCCCcccccCC
Q 008876 187 GFLRLQDNN-LTG-KIPPT-------FGYLASLRRVSLANNKLEGAIPT--SLGNLQDLTELYLNGNQLSGQIPKSISQL 255 (550)
Q Consensus 187 ~~L~l~~~~-~~~-~~~~~-------l~~~~~L~~L~l~~~~~~~~~~~--~l~~~~~L~~L~l~~~~~~~~~~~~l~~~ 255 (550)
+.|++++|. +.. ..|.. +..+++|+.|++++|.+. .++. .+..+++|++|++++|.+. .++ .+..+
T Consensus 518 ~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L 594 (876)
T 4ecn_A 518 QSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTN 594 (876)
T ss_dssp CEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTT
T ss_pred CEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCC
Confidence 666666665 443 23322 233447777777777776 5555 6777777777777777776 444 66677
Q ss_pred CcccEEEccCCcccCCCCCcccCCCC-ccEEEccCCcccCCccchhcccCC--CCcEEEeecccccccCCccccC----C
Q 008876 256 SQLIFLSISRNQIEGPLPSGMFSLQN-LQTLDLSFNLLNLSSIPMWMAELP--SLSRVYLAGCGIKGKIPEFFRT----T 328 (550)
Q Consensus 256 ~~L~~L~l~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~~~~~~~~~~~~--~L~~L~l~~~~~~~~~~~~~~~----~ 328 (550)
++|+.|++++|.+. .++..+..+++ |+.|++++|.+. .++..+...+ +|+.|++++|.+.+..+..... .
T Consensus 595 ~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~--~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~ 671 (876)
T 4ecn_A 595 VKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK--YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYK 671 (876)
T ss_dssp SEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC--SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCC
T ss_pred CcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC--cCchhhhccccCCCCEEECcCCcCCCccccchhhhcccc
Confidence 77777777777777 56666666777 777777777654 4555554443 3777777777776544322211 1
Q ss_pred CCCccEEEcccccCCCCchhhhhccccccEEEccCCeeeccCCccccC-------CCCCcEEEccCCccccccccccccC
Q 008876 329 PSPLQELDLSVNHLSGSIPAWIGSLTQLYSLNLSRNSLVSSIPETITN-------LQDLVLLDLHSNKLTGSISQVFKIG 401 (550)
Q Consensus 329 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~-------~~~L~~L~l~~~~i~~~~~~~~~~~ 401 (550)
..+|+.|++++|.+.......+..+++|+.|++++|.+...+...+.. +++|++|++++|+++..+......
T Consensus 672 ~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~~- 750 (876)
T 4ecn_A 672 GINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRAT- 750 (876)
T ss_dssp CCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGGGSTT-
T ss_pred CCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCccchHHhhhc-
Confidence 235899999999988665556668899999999999888554444332 338999999999988554333200
Q ss_pred CCCCCCCeEEEeccCCCCCCCCCCCCCCCcccccEEeccC------CcccCcCCcccccccccceeeCCCCccceeCCCc
Q 008876 402 QRFPDGSLTYIDLSDNGFSSGIELTGGGGQTGIRFLNLSR------NVLEGQIPVSVGRLRSLRSLDLSYNKLGYVLPGS 475 (550)
Q Consensus 402 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~------~~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~ 475 (550)
..++|+.|++++|.+.+ ++. .+..+++|+.|++++ |.+.+..|..+.++++|+.|+|++|.++ .+|..
T Consensus 751 ---~l~~L~~L~Ls~N~L~~-lp~-~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L~-~Ip~~ 824 (876)
T 4ecn_A 751 ---TLPYLSNMDVSYNCFSS-FPT-QPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIR-KVDEK 824 (876)
T ss_dssp ---TCTTCCEEECCSSCCSS-CCC-GGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCC-BCCSC
T ss_pred ---cCCCcCEEEeCCCCCCc-cch-hhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCCC-ccCHh
Confidence 12789999999999887 433 566889999999976 7788889999999999999999999995 66776
Q ss_pred CCCCCCCcEEECcCccccccCCCcccCCCcCceeecCCcc
Q 008876 476 LANESSLETLKLQNNRFTGRIPSEYLKLKKLKELDLSHNL 515 (550)
Q Consensus 476 l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~ 515 (550)
+. ++|+.|+|++|++....+..+.....+..+.+.+|+
T Consensus 825 l~--~~L~~LdLs~N~l~~i~~~~~~~~~~~~~~~L~~n~ 862 (876)
T 4ecn_A 825 LT--PQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDK 862 (876)
T ss_dssp CC--SSSCEEECCSCTTCEEECGGGHHHHHTTCCEEECCT
T ss_pred hc--CCCCEEECCCCCCCccChHHccccccchheeecCCC
Confidence 65 699999999999987776666655455555555443
No 23
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=2.5e-37 Score=324.43 Aligned_cols=493 Identities=21% Similarity=0.189 Sum_probs=367.8
Q ss_pred CCccccccCcccEeeCCCCCCCCcCCCCCccCCCCCcEEeCCCccCCCCCchhhhhccCCcEEEcCCCcCCCcccccccC
Q 008876 5 LSPSISLLTSLEVLDLGGLVDLTGIIPPSIGCLQNLKKLYLYGNKLSGSVPESISKLLKLEELHLHENRLSGTLSSSLGN 84 (550)
Q Consensus 5 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~ 84 (550)
+|..+. +++++|+|++ +.+....+.+|.++++|++|++++|.++...+.+|.++++|++|+|++|.+....+.+|..
T Consensus 46 vP~~lp--~~~~~LdLs~-N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~ 122 (635)
T 4g8a_A 46 IPDNLP--FSTKNLDLSF-NPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSG 122 (635)
T ss_dssp CCSSSC--TTCCEEECTT-SCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTT
T ss_pred cCCCCC--cCCCEEEeeC-CCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcC
Confidence 454432 4799999999 5677666678999999999999999999777788999999999999999998666778999
Q ss_pred CcccchhhccccccCccCchhccCCCCCCEEEcccccCccc-cchhhcCCCCcCeEeccCccccCcCCcccCCCCCC---
Q 008876 85 LKNINQLLMHTNQFTGVIPDSFTNLTNLVRLDLHCNYLNGY-IPEKIGELQLLEQLDFSNNLLRGKLPPSLCNLTVI--- 160 (550)
Q Consensus 85 l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L--- 160 (550)
+++|++|++++|.+....+.+|+++++|++|++++|.+... .+..+..+++|++|++++|.+....+..+..+.++
T Consensus 123 L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~ 202 (635)
T 4g8a_A 123 LSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLL 202 (635)
T ss_dssp CTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTC
T ss_pred CCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhh
Confidence 99999999999999877777799999999999999998754 46778899999999999999886666665544333
Q ss_pred -CEEEccCCcccccccCCCCCCCCCCccEEEcCCCccc-------------------------------ccCCCCccCCC
Q 008876 161 -SVLYLDNNKLEGAIPFPSSPGQMPSLGFLRLQDNNLT-------------------------------GKIPPTFGYLA 208 (550)
Q Consensus 161 -~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-------------------------------~~~~~~l~~~~ 208 (550)
..++++.+.+....+ .......++.+++.++... ......+....
T Consensus 203 ~~~~~ls~n~l~~i~~---~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~ 279 (635)
T 4g8a_A 203 NLSLDLSLNPMNFIQP---GAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLC 279 (635)
T ss_dssp CCEEECTTCCCCEECT---TTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGG
T ss_pred hhhhhcccCcccccCc---ccccchhhhhhhhhcccccccccchhhcCCccccccccccccccccccccccccccccccc
Confidence 357777776654322 1222234455555444221 01111122222
Q ss_pred CCcEEEcccCcccC---cchhhccCCCCCcEEEecCccccCCCcccccCCCcccEEEccCCcccCCCCCcccCCCCccEE
Q 008876 209 SLRRVSLANNKLEG---AIPTSLGNLQDLTELYLNGNQLSGQIPKSISQLSQLIFLSISRNQIEGPLPSGMFSLQNLQTL 285 (550)
Q Consensus 209 ~L~~L~l~~~~~~~---~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 285 (550)
.+....+..+.... .....+....+++.+.+..+.+... ..+.....++.|++.++.+..... ..++.|+.+
T Consensus 280 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~---~~l~~L~~l 354 (635)
T 4g8a_A 280 NLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERV--KDFSYNFGWQHLELVNCKFGQFPT---LKLKSLKRL 354 (635)
T ss_dssp GSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEEC--GGGGSCCCCSEEEEESCEESSCCC---CBCTTCCEE
T ss_pred chhhhhhhhhhhcccccchhhhhhhhcccccccccccccccc--cccccchhhhhhhcccccccCcCc---ccchhhhhc
Confidence 33333333222111 1122344567788888888776532 235566889999999988764322 246788888
Q ss_pred EccCCcccCCccchhcccCCCCcEEEeeccccccc--CCccccCCCCCccEEEcccccCCCCchhhhhccccccEEEccC
Q 008876 286 DLSFNLLNLSSIPMWMAELPSLSRVYLAGCGIKGK--IPEFFRTTPSPLQELDLSVNHLSGSIPAWIGSLTQLYSLNLSR 363 (550)
Q Consensus 286 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 363 (550)
.+..+.... ......+++|+.++++.+.+... ......... +++.+++..+.... ....+..+++|+.+++..
T Consensus 355 ~l~~n~~~~---~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~-~L~~L~~~~~~~~~-~~~~~~~l~~L~~l~l~~ 429 (635)
T 4g8a_A 355 TFTSNKGGN---AFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTI-SLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQH 429 (635)
T ss_dssp EEESCCSCC---BCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCS-CCCEEECCSCSEEE-ECSCCTTCTTCCEEECTT
T ss_pred ccccccCCC---Ccccccccccccchhhccccccccccccchhhhh-hhhhhhcccccccc-ccccccccccccchhhhh
Confidence 888775332 22344688999999998876432 222233333 48999998887653 334567789999999999
Q ss_pred CeeeccC-CccccCCCCCcEEEccCCccccccccccccCCCCCCCCeEEEeccCCCCCCCCCCCCCCCcccccEEeccCC
Q 008876 364 NSLVSSI-PETITNLQDLVLLDLHSNKLTGSISQVFKIGQRFPDGSLTYIDLSDNGFSSGIELTGGGGQTGIRFLNLSRN 442 (550)
Q Consensus 364 ~~~~~~~-~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 442 (550)
+...... ...+..+++++.++++.|.+.......+... +.++.|++++|.+........+..+++|++|++++|
T Consensus 430 ~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~-----~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N 504 (635)
T 4g8a_A 430 SNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGL-----SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC 504 (635)
T ss_dssp SEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTC-----TTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS
T ss_pred ccccccccccccccccccccccccccccccccccccccc-----hhhhhhhhhhcccccccCchhhhhccccCEEECCCC
Confidence 8877654 3567788999999999999887766665544 789999999998766666667889999999999999
Q ss_pred cccCcCCcccccccccceeeCCCCccceeCCCcCCCCCCCcEEECcCccccccCCCcccCC-CcCceeecCCccccc
Q 008876 443 VLEGQIPVSVGRLRSLRSLDLSYNKLGYVLPGSLANESSLETLKLQNNRFTGRIPSEYLKL-KKLKELDLSHNLLVG 518 (550)
Q Consensus 443 ~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l-~~L~~L~l~~n~~~~ 518 (550)
.+++..+..|.++++|++|+|++|+++.+.+..+.++++|++|++++|.+++..|..+.++ ++|++|++++|++.+
T Consensus 505 ~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C 581 (635)
T 4g8a_A 505 QLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC 581 (635)
T ss_dssp CCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCC
T ss_pred ccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcc
Confidence 9998889999999999999999999998888889999999999999999998888889887 689999999999874
No 24
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=1.5e-37 Score=319.67 Aligned_cols=461 Identities=20% Similarity=0.178 Sum_probs=305.4
Q ss_pred cccCcccEeeCCCCCCCCcCCCCCccCCCCCcEEeCCCccCCCCCchhhhhccCCcEEEcCCCcCCCcccccccCCcccc
Q 008876 10 SLLTSLEVLDLGGLVDLTGIIPPSIGCLQNLKKLYLYGNKLSGSVPESISKLLKLEELHLHENRLSGTLSSSLGNLKNIN 89 (550)
Q Consensus 10 ~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 89 (550)
..+...++++++++ .+. .+|..+. ++|++|++++|.+++..+..|.++++|++|++++|.+....+..|..+++|+
T Consensus 28 ~~~~~~~~l~ls~~-~L~-~ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 103 (562)
T 3a79_B 28 FSNELESMVDYSNR-NLT-HVPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLE 103 (562)
T ss_dssp -----CCEEECTTS-CCC-SCCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCC
T ss_pred cccCCCcEEEcCCC-CCc-cCCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCC
Confidence 34556689999994 555 5777664 8999999999999977788999999999999999999877788899999999
Q ss_pred hhhccccccCccCchhccCCCCCCEEEcccccCcccc-chhhcCCCCcCeEeccCccccCcCCcccCCCCCC--CEEEcc
Q 008876 90 QLLMHTNQFTGVIPDSFTNLTNLVRLDLHCNYLNGYI-PEKIGELQLLEQLDFSNNLLRGKLPPSLCNLTVI--SVLYLD 166 (550)
Q Consensus 90 ~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L--~~L~l~ 166 (550)
+|++++|.+. .+|.. .+++|++|++++|.+.... +..+..+++|++|++++|.+... .+..+++| +.|+++
T Consensus 104 ~L~Ls~N~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~ 177 (562)
T 3a79_B 104 YLDVSHNRLQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLD 177 (562)
T ss_dssp EEECTTSCCC-EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEE
T ss_pred EEECCCCcCC-ccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEee
Confidence 9999999998 45544 8999999999999998643 57899999999999999988753 34445555 999999
Q ss_pred CCcc--cccccCCCCCCCCC-CccEEEcCCCcccccCC-CCccCCCCCcEEEcccCccc----CcchhhccCCCCCcEEE
Q 008876 167 NNKL--EGAIPFPSSPGQMP-SLGFLRLQDNNLTGKIP-PTFGYLASLRRVSLANNKLE----GAIPTSLGNLQDLTELY 238 (550)
Q Consensus 167 ~~~~--~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~----~~~~~~l~~~~~L~~L~ 238 (550)
+|.+ .+..+ ..+..+. ..-.++++++.+....+ ..+..+++|+.++++++... ......+..+++|+.++
T Consensus 178 ~n~l~~~~~~~--~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~ 255 (562)
T 3a79_B 178 LVSYHIKGGET--ESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVT 255 (562)
T ss_dssp ESSCCCCSSSC--CEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEE
T ss_pred cccccccccCc--ccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEE
Confidence 9987 43222 3333332 12245667776553222 23457789999999987421 12234567889999999
Q ss_pred ecCccccCCCcc---cccCCCcccEEEccCCcccCCCCCcc-----cCCCCccEEEccCCcccCCccc-hhcc---cCCC
Q 008876 239 LNGNQLSGQIPK---SISQLSQLIFLSISRNQIEGPLPSGM-----FSLQNLQTLDLSFNLLNLSSIP-MWMA---ELPS 306 (550)
Q Consensus 239 l~~~~~~~~~~~---~l~~~~~L~~L~l~~~~~~~~~~~~~-----~~~~~L~~L~l~~~~~~~~~~~-~~~~---~~~~ 306 (550)
+..+.+...... .....++|++|++++|.+...++..+ ..++.|+.+++..+.+ .++ .++. ..++
T Consensus 256 L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~---~~p~~~~~~~~~~~~ 332 (562)
T 3a79_B 256 LQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF---LFSKEALYSVFAEMN 332 (562)
T ss_dssp EEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC---SSCHHHHHHHHHTCC
T ss_pred ecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhccccee---ecChhhhhhhhccCc
Confidence 988765432111 11234589999999998886666655 3344444444444332 222 1111 1245
Q ss_pred CcEEEeecccccccCCccccCCCCCccEEEcccccCCCCchhhhhccccccEEEccCCeeeccCCccccCCCCCcEEEcc
Q 008876 307 LSRVYLAGCGIKGKIPEFFRTTPSPLQELDLSVNHLSGSIPAWIGSLTQLYSLNLSRNSLVSSIPETITNLQDLVLLDLH 386 (550)
Q Consensus 307 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~ 386 (550)
|+.|+++++.+.... + ...+++|+.|++++|.+.+..+..+..+++|++|+++
T Consensus 333 L~~L~l~~n~~~~~~---~------------------------~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~ 385 (562)
T 3a79_B 333 IKMLSISDTPFIHMV---C------------------------PPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQ 385 (562)
T ss_dssp CSEEEEESSCCCCCC---C------------------------CSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECC
T ss_pred ceEEEccCCCccccc---C------------------------ccCCCCceEEECCCCccccchhhhhcccCCCCEEECC
Confidence 666666665543211 1 1234445555555555444444444455555555555
Q ss_pred CCccccccc--cccccCCCCCCCCeEEEeccCCCCCCCCCCCCCCCcccccEEeccCCcccCcCCcccccccccceeeCC
Q 008876 387 SNKLTGSIS--QVFKIGQRFPDGSLTYIDLSDNGFSSGIELTGGGGQTGIRFLNLSRNVLEGQIPVSVGRLRSLRSLDLS 464 (550)
Q Consensus 387 ~~~i~~~~~--~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~ 464 (550)
+|+++..+. ..+... ++|++|++++|.+.+.++...+..+++|++|++++|.+++..+..+. ++|+.|+++
T Consensus 386 ~N~l~~~~~~~~~~~~l-----~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~ 458 (562)
T 3a79_B 386 RNGLKNFFKVALMTKNM-----SSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLH 458 (562)
T ss_dssp SSCCCBTTHHHHTTTTC-----TTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECC
T ss_pred CCCcCCcccchhhhcCC-----CCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECC
Confidence 555443221 111111 45555555555555544444566777888888888887755554443 678888888
Q ss_pred CCccceeCCCcCCCCCCCcEEECcCccccccCCCc-ccCCCcCceeecCCccccccCC
Q 008876 465 YNKLGYVLPGSLANESSLETLKLQNNRFTGRIPSE-YLKLKKLKELDLSHNLLVGEIP 521 (550)
Q Consensus 465 ~n~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~l~~L~~L~l~~n~~~~~~~ 521 (550)
+|+++ .+|..+.++++|++|++++|.++ .+|.. +..+++|+.|++++|++.+..|
T Consensus 459 ~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~c~ 514 (562)
T 3a79_B 459 NNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNPWDCTCP 514 (562)
T ss_dssp SSCCC-CCCTTTTSSCCCSEEECCSSCCC-CCCTTSTTTCTTCCCEECCSCCBCCCHH
T ss_pred CCcCc-ccChhhcCCCCCCEEECCCCCCC-CCCHHHHhcCCCCCEEEecCCCcCCCcc
Confidence 88888 45555558888888888888888 45554 7888888888888888876544
No 25
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=1.1e-35 Score=298.34 Aligned_cols=382 Identities=21% Similarity=0.204 Sum_probs=254.3
Q ss_pred eEeccCccccCcCCcccCCCCCCCEEEccCCcccccccCCCCCCCCCCccEEEcCCCccc-ccCCCCccCCCCCcEEEcc
Q 008876 138 QLDFSNNLLRGKLPPSLCNLTVISVLYLDNNKLEGAIPFPSSPGQMPSLGFLRLQDNNLT-GKIPPTFGYLASLRRVSLA 216 (550)
Q Consensus 138 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~l~~~~~L~~L~l~ 216 (550)
.++.++..++ .+|. -.++|++|++++|.+.+..+ ..+..+++|++|+++++.+. ...+..+..+++|++|+++
T Consensus 14 ~~~c~~~~l~-~lp~---l~~~l~~L~Ls~n~i~~~~~--~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls 87 (455)
T 3v47_A 14 NAICINRGLH-QVPE---LPAHVNYVDLSLNSIAELNE--TSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLD 87 (455)
T ss_dssp EEECCSSCCS-SCCC---CCTTCCEEECCSSCCCEECT--TTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECT
T ss_pred ccCcCCCCcc-cCCC---CCCccCEEEecCCccCcCCh--hHhccCccccEEECcCCcccceECcccccccccCCEEeCC
Confidence 4566666555 4444 22678888888887765433 56778888888888888765 3345567778888888888
Q ss_pred cCcccCcchhhccCCCCCcEEEecCccccCCCcc--cccCCCcccEEEccCCcccCCCCCc-ccCCCCccEEEccCCccc
Q 008876 217 NNKLEGAIPTSLGNLQDLTELYLNGNQLSGQIPK--SISQLSQLIFLSISRNQIEGPLPSG-MFSLQNLQTLDLSFNLLN 293 (550)
Q Consensus 217 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~--~l~~~~~L~~L~l~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~ 293 (550)
+|.+....+..++.+++|++|++++|.++...+. .+..+++|++|++++|.+....+.. +..+++|++|++++|.+.
T Consensus 88 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~ 167 (455)
T 3v47_A 88 YNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVK 167 (455)
T ss_dssp TCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBS
T ss_pred CCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCccc
Confidence 8887766677778888888888888877643333 3667788888888888777554544 566778888888777654
Q ss_pred CCccchhcccC--CCCcEEEeecccccccCCcccc-------CCCCCccEEEcccccCCCCchhhhhcc---ccccEEEc
Q 008876 294 LSSIPMWMAEL--PSLSRVYLAGCGIKGKIPEFFR-------TTPSPLQELDLSVNHLSGSIPAWIGSL---TQLYSLNL 361 (550)
Q Consensus 294 ~~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~~~-------~~~~~L~~L~l~~~~~~~~~~~~~~~~---~~L~~L~l 361 (550)
.. .+..+..+ ++++.+++.++.+.......+. ...++|++|++++|.+.+..+..+... ++++.+++
T Consensus 168 ~~-~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l 246 (455)
T 3v47_A 168 SI-CEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLIL 246 (455)
T ss_dssp CC-CTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEEC
T ss_pred cc-ChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEee
Confidence 33 22233332 4566666666665543322111 011235666666665554443333322 45555555
Q ss_pred cCCeeeccCCccccCCCCCcEEEccCCccccccccccccCCCCCCCCeEEEeccCCCCCCCCCCCCCCCcccccEEeccC
Q 008876 362 SRNSLVSSIPETITNLQDLVLLDLHSNKLTGSISQVFKIGQRFPDGSLTYIDLSDNGFSSGIELTGGGGQTGIRFLNLSR 441 (550)
Q Consensus 362 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~ 441 (550)
++|....... ..+.+.......+... ..++|++|++++|.+.+..+ ..+..+++|++|++++
T Consensus 247 ~~~~~~~~~~--------------~~~~~~~~~~~~~~~~---~~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~Ls~ 308 (455)
T 3v47_A 247 SNSYNMGSSF--------------GHTNFKDPDNFTFKGL---EASGVKTCDLSKSKIFALLK-SVFSHFTDLEQLTLAQ 308 (455)
T ss_dssp TTCTTTSCCT--------------TCCSSCCCCTTTTGGG---TTSCCCEEECCSSCCCEECT-TTTTTCTTCCEEECTT
T ss_pred cccccccccc--------------chhhhccCcccccccc---cccCceEEEecCccccccch-hhcccCCCCCEEECCC
Confidence 5554322100 0001111111111111 12578888888888775433 3577888899999999
Q ss_pred CcccCcCCcccccccccceeeCCCCccceeCCCcCCCCCCCcEEECcCccccccCCCcccCCCcCceeecCCccccccCC
Q 008876 442 NVLEGQIPVSVGRLRSLRSLDLSYNKLGYVLPGSLANESSLETLKLQNNRFTGRIPSEYLKLKKLKELDLSHNLLVGEIP 521 (550)
Q Consensus 442 ~~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ 521 (550)
|.+++..+..+.++++|++|++++|.+++..+..+.++++|++|++++|.+.+..|..+..+++|++|++++|.+.+..+
T Consensus 309 n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 388 (455)
T 3v47_A 309 NEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPD 388 (455)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred CcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCH
Confidence 88887778888888899999999998888888888888899999999999888778888889999999999998886444
Q ss_pred CC-CCCCCccccCCCCCCCCCCCC
Q 008876 522 AG-KPLSDFPESSFSGNRGLCGKP 544 (550)
Q Consensus 522 ~~-~~~~~~~~l~~~~~~~~~~~~ 544 (550)
.. ..+++++++++++||+.|+|+
T Consensus 389 ~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 389 GIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp TTTTTCTTCCEEECCSSCBCCCTT
T ss_pred hHhccCCcccEEEccCCCcccCCC
Confidence 44 347888889999999999987
No 26
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=1.8e-35 Score=296.90 Aligned_cols=386 Identities=20% Similarity=0.216 Sum_probs=207.9
Q ss_pred EEeCCCccCCCCCchhhhhccCCcEEEcCCCcCCCcccccccCCcccchhhccccccCc-cCchhccCCCCCCEEEcccc
Q 008876 42 KLYLYGNKLSGSVPESISKLLKLEELHLHENRLSGTLSSSLGNLKNINQLLMHTNQFTG-VIPDSFTNLTNLVRLDLHCN 120 (550)
Q Consensus 42 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~l~~l~~L~~L~l~~~ 120 (550)
.++.++..++ .+|. + .++|++|++++|.+....+..+.++++|++|++++|.+.. ..+.+|.++++|++|++++|
T Consensus 14 ~~~c~~~~l~-~lp~-l--~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n 89 (455)
T 3v47_A 14 NAICINRGLH-QVPE-L--PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89 (455)
T ss_dssp EEECCSSCCS-SCCC-C--CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTC
T ss_pred ccCcCCCCcc-cCCC-C--CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCC
Confidence 4455555554 3343 2 2456666666666554445555555666666665555432 22344555555555555555
Q ss_pred cCccccchhhcCCCCcCeEeccCccccCcCCcccCCCCCCCEEEccCCcccccccCCCCCCCCCCccEEEcCCCcccccC
Q 008876 121 YLNGYIPEKIGELQLLEQLDFSNNLLRGKLPPSLCNLTVISVLYLDNNKLEGAIPFPSSPGQMPSLGFLRLQDNNLTGKI 200 (550)
Q Consensus 121 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 200 (550)
.+....+..+..+++|++|++++|.+.+..+.. ..+..+++|++|++++|.+....
T Consensus 90 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~------------------------~~~~~l~~L~~L~L~~n~l~~~~ 145 (455)
T 3v47_A 90 QFLQLETGAFNGLANLEVLTLTQCNLDGAVLSG------------------------NFFKPLTSLEMLVLRDNNIKKIQ 145 (455)
T ss_dssp TTCEECTTTTTTCTTCCEEECTTSCCBTHHHHS------------------------STTTTCTTCCEEECCSSBCCSCC
T ss_pred ccCccChhhccCcccCCEEeCCCCCCCccccCc------------------------ccccCcccCCEEECCCCccCccC
Confidence 555444445555555555555555443221111 22344444555555554444332
Q ss_pred CCC-ccCCCCCcEEEcccCcccCcchhhccCC--CCCcEEEecCccccCCCccc--------ccCCCcccEEEccCCccc
Q 008876 201 PPT-FGYLASLRRVSLANNKLEGAIPTSLGNL--QDLTELYLNGNQLSGQIPKS--------ISQLSQLIFLSISRNQIE 269 (550)
Q Consensus 201 ~~~-l~~~~~L~~L~l~~~~~~~~~~~~l~~~--~~L~~L~l~~~~~~~~~~~~--------l~~~~~L~~L~l~~~~~~ 269 (550)
+.. +..+++|++|++++|.+....+..+..+ ++|+.++++++.+....... +..+++|+.|++++|.+.
T Consensus 146 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~ 225 (455)
T 3v47_A 146 PASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFK 225 (455)
T ss_dssp CCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCC
T ss_pred cccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCccc
Confidence 322 3444455555555544443333333322 34455555554443221111 112234444444444333
Q ss_pred CCCCCcccCCCCccEEEccCCcccCCccchhcccCCCCcEEEeecccccccCCccccCCCCCccEEEcccccCCCCchhh
Q 008876 270 GPLPSGMFSLQNLQTLDLSFNLLNLSSIPMWMAELPSLSRVYLAGCGIKGKIPEFFRTTPSPLQELDLSVNHLSGSIPAW 349 (550)
Q Consensus 270 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 349 (550)
...+..+... ...++|+.++++++........ .+.+.......
T Consensus 226 ~~~~~~~~~~----------------------~~~~~L~~L~l~~~~~~~~~~~---------------~~~~~~~~~~~ 268 (455)
T 3v47_A 226 ESMAKRFFDA----------------------IAGTKIQSLILSNSYNMGSSFG---------------HTNFKDPDNFT 268 (455)
T ss_dssp HHHHHHHHHH----------------------TTTCCEEEEECTTCTTTSCCTT---------------CCSSCCCCTTT
T ss_pred ccchhhhhcc----------------------ccccceeeEeeccccccccccc---------------hhhhccCcccc
Confidence 2211111110 0113344444444332211000 00111111111
Q ss_pred hh--ccccccEEEccCCeeeccCCccccCCCCCcEEEccCCccccccccccccCCCCCCCCeEEEeccCCCCCCCCCCCC
Q 008876 350 IG--SLTQLYSLNLSRNSLVSSIPETITNLQDLVLLDLHSNKLTGSISQVFKIGQRFPDGSLTYIDLSDNGFSSGIELTG 427 (550)
Q Consensus 350 ~~--~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 427 (550)
+. ..++|+.+++++|.+....+..+..+++|++|++++|+++...+. .
T Consensus 269 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~------------------------------~ 318 (455)
T 3v47_A 269 FKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDN------------------------------A 318 (455)
T ss_dssp TGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTT------------------------------T
T ss_pred cccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChh------------------------------H
Confidence 11 235677777777777766666667777777777777766533222 3
Q ss_pred CCCcccccEEeccCCcccCcCCcccccccccceeeCCCCccceeCCCcCCCCCCCcEEECcCccccccCCCcccCCCcCc
Q 008876 428 GGGQTGIRFLNLSRNVLEGQIPVSVGRLRSLRSLDLSYNKLGYVLPGSLANESSLETLKLQNNRFTGRIPSEYLKLKKLK 507 (550)
Q Consensus 428 ~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 507 (550)
+..+++|++|++++|.+++..+..+.++++|++|++++|.+++..|..+.++++|++|++++|.++...+..+..+++|+
T Consensus 319 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 398 (455)
T 3v47_A 319 FWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQ 398 (455)
T ss_dssp TTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCC
T ss_pred hcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCccc
Confidence 34566777777777777766777788888888888888888888888888888888888888888866555678888889
Q ss_pred eeecCCccccccCCC
Q 008876 508 ELDLSHNLLVGEIPA 522 (550)
Q Consensus 508 ~L~l~~n~~~~~~~~ 522 (550)
+|++++|++.+..|.
T Consensus 399 ~L~l~~N~l~~~~~~ 413 (455)
T 3v47_A 399 KIWLHTNPWDCSCPR 413 (455)
T ss_dssp EEECCSSCBCCCTTT
T ss_pred EEEccCCCcccCCCc
Confidence 999999888887774
No 27
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=9.4e-35 Score=288.59 Aligned_cols=419 Identities=23% Similarity=0.282 Sum_probs=224.5
Q ss_pred CCCCcEEeCCCccCCCCCchhhhhccCCcEEEcCCCcCCCcccccccCCcccchhhccccccCccCchhccCCCCCCEEE
Q 008876 37 LQNLKKLYLYGNKLSGSVPESISKLLKLEELHLHENRLSGTLSSSLGNLKNINQLLMHTNQFTGVIPDSFTNLTNLVRLD 116 (550)
Q Consensus 37 l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ 116 (550)
.++|++|+++++.+ +.+|..++++++|++|++++|.+....|..+.++++|+.+++.+|.. .++++|+
T Consensus 10 ~~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~-----------~~l~~L~ 77 (454)
T 1jl5_A 10 NTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLD-----------RQAHELE 77 (454)
T ss_dssp -------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHH-----------HTCSEEE
T ss_pred cccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhc-----------cCCCEEE
Confidence 46777777777777 46777777777777777777766556677777777777776666542 3567777
Q ss_pred cccccCccccchhhcCCCCcCeEeccCccccCcCCcccCCCCCCCEEEccCCcccccccCCCCCCCCCCccEEEcCCCcc
Q 008876 117 LHCNYLNGYIPEKIGELQLLEQLDFSNNLLRGKLPPSLCNLTVISVLYLDNNKLEGAIPFPSSPGQMPSLGFLRLQDNNL 196 (550)
Q Consensus 117 l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 196 (550)
++++.++.+ +. ..++|++|++++|.+.+ +|.. .++|++|++++|.+.+... ..++|++|++++|.+
T Consensus 78 l~~~~l~~l-p~---~~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~l~~------~~~~L~~L~L~~n~l 143 (454)
T 1jl5_A 78 LNNLGLSSL-PE---LPPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKALSD------LPPLLEYLGVSNNQL 143 (454)
T ss_dssp CTTSCCSCC-CS---CCTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSCCCS------CCTTCCEEECCSSCC
T ss_pred ecCCccccC-CC---CcCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCcccC------CCCCCCEEECcCCCC
Confidence 777776642 22 23677788887777764 4432 3677788887776654221 125788888888877
Q ss_pred cccCCCCccCCCCCcEEEcccCcccCcchhhccCCCCCcEEEecCccccCCCcccccCCCcccEEEccCCcccCCCCCcc
Q 008876 197 TGKIPPTFGYLASLRRVSLANNKLEGAIPTSLGNLQDLTELYLNGNQLSGQIPKSISQLSQLIFLSISRNQIEGPLPSGM 276 (550)
Q Consensus 197 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~ 276 (550)
.. ++ .++.+++|++|++++|.+.. .+.. .++|++|++++|.++. .+ .+..+++|+.|++++|.+.. ++..
T Consensus 144 ~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~---~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~- 213 (454)
T 1jl5_A 144 EK-LP-ELQNSSFLKIIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDL- 213 (454)
T ss_dssp SS-CC-CCTTCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCC-
T ss_pred CC-Cc-ccCCCCCCCEEECCCCcCcc-cCCC---cccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCC-
Confidence 74 44 47777888888888877764 3322 3478888888887764 33 46777888888888887763 3322
Q ss_pred cCCCCccEEEccCCcccCCccchhcccCCCCcEEEeecccccccCCccccCCCCCccEEEcccccCCCCchhhhhccccc
Q 008876 277 FSLQNLQTLDLSFNLLNLSSIPMWMAELPSLSRVYLAGCGIKGKIPEFFRTTPSPLQELDLSVNHLSGSIPAWIGSLTQL 356 (550)
Q Consensus 277 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L 356 (550)
.++|+.|++++|.+. .++ .+..+++|+.|++++|.+.+.. . ...+|+.|++++|.+.+. +. .+++|
T Consensus 214 --~~~L~~L~l~~n~l~--~lp-~~~~l~~L~~L~l~~N~l~~l~-~----~~~~L~~L~l~~N~l~~l-~~---~~~~L 279 (454)
T 1jl5_A 214 --PLSLESIVAGNNILE--ELP-ELQNLPFLTTIYADNNLLKTLP-D----LPPSLEALNVRDNYLTDL-PE---LPQSL 279 (454)
T ss_dssp --CTTCCEEECCSSCCS--SCC-CCTTCTTCCEEECCSSCCSSCC-S----CCTTCCEEECCSSCCSCC-CC---CCTTC
T ss_pred --cCcccEEECcCCcCC--ccc-ccCCCCCCCEEECCCCcCCccc-c----cccccCEEECCCCccccc-Cc---ccCcC
Confidence 247888888887655 344 3667788888888887766422 1 234588888888877642 21 23678
Q ss_pred cEEEccCCeeeccCCccccCCCCCcEEEccCCccccccccccccCCCCCCCCeEEEeccCCCCCCCCCCCCCCCcccccE
Q 008876 357 YSLNLSRNSLVSSIPETITNLQDLVLLDLHSNKLTGSISQVFKIGQRFPDGSLTYIDLSDNGFSSGIELTGGGGQTGIRF 436 (550)
Q Consensus 357 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~ 436 (550)
+.|++++|.+.+... ..++|++|++++|+++.... + + ++|++|++++|.+.+ ++. .+++|++
T Consensus 280 ~~L~ls~N~l~~l~~----~~~~L~~L~l~~N~l~~i~~--~------~-~~L~~L~Ls~N~l~~-lp~----~~~~L~~ 341 (454)
T 1jl5_A 280 TFLDVSENIFSGLSE----LPPNLYYLNASSNEIRSLCD--L------P-PSLEELNVSNNKLIE-LPA----LPPRLER 341 (454)
T ss_dssp CEEECCSSCCSEESC----CCTTCCEEECCSSCCSEECC--C------C-TTCCEEECCSSCCSC-CCC----CCTTCCE
T ss_pred CEEECcCCccCcccC----cCCcCCEEECcCCcCCcccC--C------c-CcCCEEECCCCcccc-ccc----cCCcCCE
Confidence 888888887765321 12578888888887764321 0 1 467777777777764 222 2567777
Q ss_pred EeccCCcccCcCCcccccccccceeeCCCCccce--eCCCcCCCCCCCcEEECcCccccccCCCcccCCCcCceeecCCc
Q 008876 437 LNLSRNVLEGQIPVSVGRLRSLRSLDLSYNKLGY--VLPGSLANESSLETLKLQNNRFTGRIPSEYLKLKKLKELDLSHN 514 (550)
Q Consensus 437 L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~i~~--~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n 514 (550)
|++++|.+++ ++. .+++|++|++++|++++ .+|.++. .|. .|...+.+|. .+++|++|++++|
T Consensus 342 L~L~~N~l~~-lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~------~L~--~n~~~~~i~~---~~~~L~~L~ls~N 406 (454)
T 1jl5_A 342 LIASFNHLAE-VPE---LPQNLKQLHVEYNPLREFPDIPESVE------DLR--MNSHLAEVPE---LPQNLKQLHVETN 406 (454)
T ss_dssp EECCSSCCSC-CCC---CCTTCCEEECCSSCCSSCCCCCTTCC------EEE--CCC-----------------------
T ss_pred EECCCCcccc-ccc---hhhhccEEECCCCCCCcCCCChHHHH------hhh--hccccccccc---ccCcCCEEECCCC
Confidence 7777777764 333 35677777777777765 3443333 222 2333333333 2478888888888
Q ss_pred cccc--cCCCCCCCCCccccCCCCCCCCCCC
Q 008876 515 LLVG--EIPAGKPLSDFPESSFSGNRGLCGK 543 (550)
Q Consensus 515 ~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~ 543 (550)
++.+ .+|. +++.+++.+|.+.|.-
T Consensus 407 ~l~~~~~iP~-----sl~~L~~~~~~~~~~~ 432 (454)
T 1jl5_A 407 PLREFPDIPE-----SVEDLRMNSERVVDPY 432 (454)
T ss_dssp -------------------------------
T ss_pred cCCccccchh-----hHhheeCcCcccCCcc
Confidence 8876 5553 3666777777665543
No 28
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=1e-32 Score=273.88 Aligned_cols=409 Identities=26% Similarity=0.303 Sum_probs=178.0
Q ss_pred ccCcccEeeCCCCCCCCcCCCCCccCCCCCcEEeCCCccCCCCCchhhhhccCC-------------cEEEcCCCcCCCc
Q 008876 11 LLTSLEVLDLGGLVDLTGIIPPSIGCLQNLKKLYLYGNKLSGSVPESISKLLKL-------------EELHLHENRLSGT 77 (550)
Q Consensus 11 ~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L-------------~~L~l~~~~~~~~ 77 (550)
+.++|++|+++++ .+ +.+|+.++++++|++|+++++.+.+.+|..++.+.+| ++|++++|.+..
T Consensus 9 ~~~~L~~L~l~~n-~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~- 85 (454)
T 1jl5_A 9 SNTFLQEPLRHSS-NL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSS- 85 (454)
T ss_dssp ---------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSC-
T ss_pred ccccchhhhcccC-ch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCcccc-
Confidence 5689999999984 55 6899999999999999999999888889988888776 555555555442
Q ss_pred ccccccCCcccchhhccccccCccCchhccCCCCCCEEEcccccCccccchhhcCCCCcCeEeccCccccCcCCcccCCC
Q 008876 78 LSSSLGNLKNINQLLMHTNQFTGVIPDSFTNLTNLVRLDLHCNYLNGYIPEKIGELQLLEQLDFSNNLLRGKLPPSLCNL 157 (550)
Q Consensus 78 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~ 157 (550)
.|.. .++|++|++++|.+.+ +|. ..++|++|++++|.+..+ +. ..++|++|++++|.+.+ +| .+
T Consensus 86 lp~~---~~~L~~L~l~~n~l~~-lp~---~~~~L~~L~l~~n~l~~l-~~---~~~~L~~L~L~~n~l~~-lp-~~--- 149 (454)
T 1jl5_A 86 LPEL---PPHLESLVASCNSLTE-LPE---LPQSLKSLLVDNNNLKAL-SD---LPPLLEYLGVSNNQLEK-LP-EL--- 149 (454)
T ss_dssp CCSC---CTTCSEEECCSSCCSS-CCC---CCTTCCEEECCSSCCSCC-CS---CCTTCCEEECCSSCCSS-CC-CC---
T ss_pred CCCC---cCCCCEEEccCCcCCc-ccc---ccCCCcEEECCCCccCcc-cC---CCCCCCEEECcCCCCCC-Cc-cc---
Confidence 2221 2445555555554443 222 124455555554444321 10 01344444444444442 33 24
Q ss_pred CCCCEEEccCCcccccccCCCCCCCCCCccEEEcCCCcccccCCCCccCCCCCcEEEcccCcccCcchhhccCCCCCcEE
Q 008876 158 TVISVLYLDNNKLEGAIPFPSSPGQMPSLGFLRLQDNNLTGKIPPTFGYLASLRRVSLANNKLEGAIPTSLGNLQDLTEL 237 (550)
Q Consensus 158 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L 237 (550)
+.+++|++|++++|.+.. .+.. .++|++|++++|.+.. .+ .++.+++|++|
T Consensus 150 -----------------------~~l~~L~~L~l~~N~l~~-lp~~---~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L 200 (454)
T 1jl5_A 150 -----------------------QNSSFLKIIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAI 200 (454)
T ss_dssp -----------------------TTCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEE
T ss_pred -----------------------CCCCCCCEEECCCCcCcc-cCCC---cccccEEECcCCcCCc-Cc-cccCCCCCCEE
Confidence 444455555555544442 2211 1345555555555443 22 34555555555
Q ss_pred EecCccccCCCcccccCCCcccEEEccCCcccCCCCCcccCCCCccEEEccCCcccCCccchhcccCCCCcEEEeecccc
Q 008876 238 YLNGNQLSGQIPKSISQLSQLIFLSISRNQIEGPLPSGMFSLQNLQTLDLSFNLLNLSSIPMWMAELPSLSRVYLAGCGI 317 (550)
Q Consensus 238 ~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 317 (550)
++++|.++. .+. ..++|+.|++++|.+. .++ .+..+++|+.|++++|.+.. ++. ..++|+.|++++|.+
T Consensus 201 ~l~~N~l~~-l~~---~~~~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~--l~~---~~~~L~~L~l~~N~l 269 (454)
T 1jl5_A 201 YADNNSLKK-LPD---LPLSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLKT--LPD---LPPSLEALNVRDNYL 269 (454)
T ss_dssp ECCSSCCSS-CCC---CCTTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSS--CCS---CCTTCCEEECCSSCC
T ss_pred ECCCCcCCc-CCC---CcCcccEEECcCCcCC-ccc-ccCCCCCCCEEECCCCcCCc--ccc---cccccCEEECCCCcc
Confidence 555555442 111 1135555555555554 333 24455555555555554332 221 134566666666555
Q ss_pred cccCCccccCCCCCccEEEcccccCCCCchhhhhccccccEEEccCCeeeccCCccccCCCCCcEEEccCCccccccccc
Q 008876 318 KGKIPEFFRTTPSPLQELDLSVNHLSGSIPAWIGSLTQLYSLNLSRNSLVSSIPETITNLQDLVLLDLHSNKLTGSISQV 397 (550)
Q Consensus 318 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~ 397 (550)
.+. +. ..++|+.|++++|.+++.. ...++|+.|++++|.+..... ..++|++|++++|+++..+..
T Consensus 270 ~~l-~~----~~~~L~~L~ls~N~l~~l~----~~~~~L~~L~l~~N~l~~i~~----~~~~L~~L~Ls~N~l~~lp~~- 335 (454)
T 1jl5_A 270 TDL-PE----LPQSLTFLDVSENIFSGLS----ELPPNLYYLNASSNEIRSLCD----LPPSLEELNVSNNKLIELPAL- 335 (454)
T ss_dssp SCC-CC----CCTTCCEEECCSSCCSEES----CCCTTCCEEECCSSCCSEECC----CCTTCCEEECCSSCCSCCCCC-
T ss_pred ccc-Cc----ccCcCCEEECcCCccCccc----CcCCcCCEEECcCCcCCcccC----CcCcCCEEECCCCcccccccc-
Confidence 431 11 1234677777776665321 112567777777776654211 124777888887777643321
Q ss_pred cccCCCCCCCCeEEEeccCCCCCCCCCCCCCCCcccccEEeccCCcccC--cCCcccccccccceeeCCCCccceeCCCc
Q 008876 398 FKIGQRFPDGSLTYIDLSDNGFSSGIELTGGGGQTGIRFLNLSRNVLEG--QIPVSVGRLRSLRSLDLSYNKLGYVLPGS 475 (550)
Q Consensus 398 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~--~~~~~l~~l~~L~~L~l~~n~i~~~~~~~ 475 (550)
.++|++|++++|.+.. ++. .+++|++|++++|.+++ .+|..+.. | +.|......|..
T Consensus 336 --------~~~L~~L~L~~N~l~~-lp~----~l~~L~~L~L~~N~l~~l~~ip~~l~~------L--~~n~~~~~i~~~ 394 (454)
T 1jl5_A 336 --------PPRLERLIASFNHLAE-VPE----LPQNLKQLHVEYNPLREFPDIPESVED------L--RMNSHLAEVPEL 394 (454)
T ss_dssp --------CTTCCEEECCSSCCSC-CCC----CCTTCCEEECCSSCCSSCCCCCTTCCE------E--ECCC--------
T ss_pred --------CCcCCEEECCCCcccc-ccc----hhhhccEEECCCCCCCcCCCChHHHHh------h--hhcccccccccc
Confidence 1578888888887764 332 46788888888888876 34444332 2 234444444432
Q ss_pred CCCCCCCcEEECcCccccc--cCCCcccCCCcCceeecCCccccccCCC
Q 008876 476 LANESSLETLKLQNNRFTG--RIPSEYLKLKKLKELDLSHNLLVGEIPA 522 (550)
Q Consensus 476 l~~l~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~n~~~~~~~~ 522 (550)
+++|++|++++|.+.+ .+| ++++.|.+.+|.+.+.+|.
T Consensus 395 ---~~~L~~L~ls~N~l~~~~~iP------~sl~~L~~~~~~~~~~~~~ 434 (454)
T 1jl5_A 395 ---PQNLKQLHVETNPLREFPDIP------ESVEDLRMNSERVVDPYEF 434 (454)
T ss_dssp -------------------------------------------------
T ss_pred ---cCcCCEEECCCCcCCccccch------hhHhheeCcCcccCCcccc
Confidence 4688888888888875 333 4567777888888776653
No 29
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=7.3e-33 Score=279.33 Aligned_cols=347 Identities=19% Similarity=0.199 Sum_probs=253.9
Q ss_pred cEEEcCCCcccccCCCCccCCCCCcEEEcccCcccCcchhhccCCCCCcEEEecCccccCCCcccccCCCcccEEEccCC
Q 008876 187 GFLRLQDNNLTGKIPPTFGYLASLRRVSLANNKLEGAIPTSLGNLQDLTELYLNGNQLSGQIPKSISQLSQLIFLSISRN 266 (550)
Q Consensus 187 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 266 (550)
+.++..+..+.. +|..+ .++++.|+++++.+....+..|..+++|++|++++|.+....+..+..+++|++|++++|
T Consensus 14 ~~v~c~~~~l~~-ip~~~--~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n 90 (477)
T 2id5_A 14 RAVLCHRKRFVA-VPEGI--PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN 90 (477)
T ss_dssp TEEECCSCCCSS-CCSCC--CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcCc-CCCCC--CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCC
Confidence 567777777763 34333 358999999999998777788999999999999999988777888999999999999999
Q ss_pred cccCCCCCcccCCCCccEEEccCCcccCCccchhcccCCCCcEEEeecccccccCCccccCCCCCccEEEcccccCCCCc
Q 008876 267 QIEGPLPSGMFSLQNLQTLDLSFNLLNLSSIPMWMAELPSLSRVYLAGCGIKGKIPEFFRTTPSPLQELDLSVNHLSGSI 346 (550)
Q Consensus 267 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 346 (550)
.+.......+..+++|+.|++++|.+... .+..+..+++|+.|++++|.+....+..+..... |++|++++|.++...
T Consensus 91 ~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~-L~~L~l~~n~l~~~~ 168 (477)
T 2id5_A 91 RLKLIPLGVFTGLSNLTKLDISENKIVIL-LDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNS-LEQLTLEKCNLTSIP 168 (477)
T ss_dssp CCCSCCTTSSTTCTTCCEEECTTSCCCEE-CTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTT-CCEEEEESCCCSSCC
T ss_pred cCCccCcccccCCCCCCEEECCCCccccC-ChhHccccccCCEEECCCCccceeChhhccCCCC-CCEEECCCCcCcccC
Confidence 98855555677899999999999975433 4556788899999999999888766666665554 999999999988777
Q ss_pred hhhhhccccccEEEccCCeeeccCCccccCCCCCcEEEccCCccccccccccccCCCCCCCCeEEEeccCCCCCCCCCCC
Q 008876 347 PAWIGSLTQLYSLNLSRNSLVSSIPETITNLQDLVLLDLHSNKLTGSISQVFKIGQRFPDGSLTYIDLSDNGFSSGIELT 426 (550)
Q Consensus 347 ~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 426 (550)
...+..+++|+.|++++|.+....+..+..+++|++|++++|+.....+.... ...+|++|++++|.+.. ++..
T Consensus 169 ~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-----~~~~L~~L~l~~n~l~~-~~~~ 242 (477)
T 2id5_A 169 TEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCL-----YGLNLTSLSITHCNLTA-VPYL 242 (477)
T ss_dssp HHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTT-----TTCCCSEEEEESSCCCS-CCHH
T ss_pred hhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccc-----cCccccEEECcCCcccc-cCHH
Confidence 77888899999999999988877777888888999999988765433222211 11467777777777663 3333
Q ss_pred CCCCcccccEEeccCCcccCcCCcccccccccceeeCCCCccceeCCCcCCCCCCCcEEECcCccccccCCCcccCCCcC
Q 008876 427 GGGGQTGIRFLNLSRNVLEGQIPVSVGRLRSLRSLDLSYNKLGYVLPGSLANESSLETLKLQNNRFTGRIPSEYLKLKKL 506 (550)
Q Consensus 427 ~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L 506 (550)
.+..+++|++|++++|.+++..+..+..+++|++|++++|.++...+..+.++++|++|++++|.++...+..|..+++|
T Consensus 243 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 322 (477)
T 2id5_A 243 AVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNL 322 (477)
T ss_dssp HHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGC
T ss_pred HhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCccc
Confidence 45666777777777777776666667777777777777777777767777777777777777777775555556667777
Q ss_pred ceeecCCccccccCCCCCCCCCccccCCCCCCCCCCCC
Q 008876 507 KELDLSHNLLVGEIPAGKPLSDFPESSFSGNRGLCGKP 544 (550)
Q Consensus 507 ~~L~l~~n~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 544 (550)
++|++++|++...-+...-......+.+.++...|..+
T Consensus 323 ~~L~l~~N~l~c~c~~~~~~~~~~~~~~~~~~~~C~~p 360 (477)
T 2id5_A 323 ETLILDSNPLACDCRLLWVFRRRWRLNFNRQQPTCATP 360 (477)
T ss_dssp CEEECCSSCEECSGGGHHHHTTTTSSCCTTCCCBEEES
T ss_pred CEEEccCCCccCccchHhHHhhhhccccCccCceeCCc
Confidence 77777777776432211111122334556666666544
No 30
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.8e-32 Score=276.43 Aligned_cols=349 Identities=21% Similarity=0.172 Sum_probs=271.4
Q ss_pred CEEEccCCcccccccCCCCCCCCCCccEEEcCCCcccccCCCCccCCCCCcEEEcccCcccCcchhhccCCCCCcEEEec
Q 008876 161 SVLYLDNNKLEGAIPFPSSPGQMPSLGFLRLQDNNLTGKIPPTFGYLASLRRVSLANNKLEGAIPTSLGNLQDLTELYLN 240 (550)
Q Consensus 161 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~ 240 (550)
+.++.++..+.. ++..+ .++++.|+++++.+....+..+..+++|++|++++|.+....+..|..+++|++|+++
T Consensus 14 ~~v~c~~~~l~~---ip~~~--~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~ 88 (477)
T 2id5_A 14 RAVLCHRKRFVA---VPEGI--PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLR 88 (477)
T ss_dssp TEEECCSCCCSS---CCSCC--CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECC
T ss_pred CEEEeCCCCcCc---CCCCC--CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECC
Confidence 445555554432 22222 3689999999999987777888999999999999999887778889999999999999
Q ss_pred CccccCCCcccccCCCcccEEEccCCcccCCCCCcccCCCCccEEEccCCcccCCccchhcccCCCCcEEEeeccccccc
Q 008876 241 GNQLSGQIPKSISQLSQLIFLSISRNQIEGPLPSGMFSLQNLQTLDLSFNLLNLSSIPMWMAELPSLSRVYLAGCGIKGK 320 (550)
Q Consensus 241 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 320 (550)
+|.+.......+..+++|++|++++|.+....+..+..+++|+.|++++|.+... .+..+..+++|+.|++++|.+...
T Consensus 89 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~ 167 (477)
T 2id5_A 89 SNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYI-SHRAFSGLNSLEQLTLEKCNLTSI 167 (477)
T ss_dssp SSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEE-CTTSSTTCTTCCEEEEESCCCSSC
T ss_pred CCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCcccee-ChhhccCCCCCCEEECCCCcCccc
Confidence 9998866666788899999999999998866677788899999999998865433 345677889999999999988765
Q ss_pred CCccccCCCCCccEEEcccccCCCCchhhhhccccccEEEccCCeeeccCCccccCCCCCcEEEccCCcccccccccccc
Q 008876 321 IPEFFRTTPSPLQELDLSVNHLSGSIPAWIGSLTQLYSLNLSRNSLVSSIPETITNLQDLVLLDLHSNKLTGSISQVFKI 400 (550)
Q Consensus 321 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~ 400 (550)
....+.... +|+.|++++|.+.......+..+++|+.|++++|......+.......+|++|++++|+++..+...+..
T Consensus 168 ~~~~l~~l~-~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~ 246 (477)
T 2id5_A 168 PTEALSHLH-GLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRH 246 (477)
T ss_dssp CHHHHTTCT-TCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTT
T ss_pred ChhHhcccC-CCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcC
Confidence 554455544 4999999999988777778888999999999998766555544445568999999999988766555544
Q ss_pred CCCCCCCCeEEEeccCCCCCCCCCCCCCCCcccccEEeccCCcccCcCCcccccccccceeeCCCCccceeCCCcCCCCC
Q 008876 401 GQRFPDGSLTYIDLSDNGFSSGIELTGGGGQTGIRFLNLSRNVLEGQIPVSVGRLRSLRSLDLSYNKLGYVLPGSLANES 480 (550)
Q Consensus 401 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~ 480 (550)
. ++|+.|++++|.+.+ +....+..+++|+.|++++|.+++..+..+.++++|+.|++++|.++...+..|..++
T Consensus 247 l-----~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 320 (477)
T 2id5_A 247 L-----VYLRFLNLSYNPIST-IEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVG 320 (477)
T ss_dssp C-----TTCCEEECCSSCCCE-ECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGG
T ss_pred c-----cccCeeECCCCcCCc-cChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCc
Confidence 3 789999999999875 3444678889999999999999988888999999999999999999987777888899
Q ss_pred CCcEEECcCccccccCCCcccCCCcCceeecCCccccccCCCC
Q 008876 481 SLETLKLQNNRFTGRIPSEYLKLKKLKELDLSHNLLVGEIPAG 523 (550)
Q Consensus 481 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~ 523 (550)
+|++|++++|++. .......-......+.+.++......|..
T Consensus 321 ~L~~L~l~~N~l~-c~c~~~~~~~~~~~~~~~~~~~~C~~p~~ 362 (477)
T 2id5_A 321 NLETLILDSNPLA-CDCRLLWVFRRRWRLNFNRQQPTCATPEF 362 (477)
T ss_dssp GCCEEECCSSCEE-CSGGGHHHHTTTTSSCCTTCCCBEEESGG
T ss_pred ccCEEEccCCCcc-CccchHhHHhhhhccccCccCceeCCchH
Confidence 9999999999987 33222111233444566666666555543
No 31
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=1.6e-31 Score=268.18 Aligned_cols=346 Identities=27% Similarity=0.368 Sum_probs=206.8
Q ss_pred CCCCCCEEEcccccCccccchhhcCCCCcCeEeccCccccCcCCcccCCCCCCCEEEccCCcccccccCCCCCCCCCCcc
Q 008876 108 NLTNLVRLDLHCNYLNGYIPEKIGELQLLEQLDFSNNLLRGKLPPSLCNLTVISVLYLDNNKLEGAIPFPSSPGQMPSLG 187 (550)
Q Consensus 108 ~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~ 187 (550)
.+++++.|++.++.+... + .+..+++|++|++++|.+.+. +. +..+++|++|++++|.+.+..+ +..+++|+
T Consensus 44 ~l~~l~~L~l~~~~i~~l-~-~~~~l~~L~~L~Ls~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~~~~----~~~l~~L~ 115 (466)
T 1o6v_A 44 DLDQVTTLQADRLGIKSI-D-GVEYLNNLTQINFSNNQLTDI-TP-LKNLTKLVDILMNNNQIADITP----LANLTNLT 115 (466)
T ss_dssp HHHTCCEEECCSSCCCCC-T-TGGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCCCGG----GTTCTTCC
T ss_pred HhccccEEecCCCCCccC-c-chhhhcCCCEEECCCCccCCc-hh-hhccccCCEEECCCCccccChh----hcCCCCCC
Confidence 456889999988887743 3 477889999999999988744 33 7888889999998887765432 67788888
Q ss_pred EEEcCCCcccccCCCCccCCCCCcEEEcccCcccCcchhhccCCCCCcEEEecCccccCCCcccccCCCcccEEEccCCc
Q 008876 188 FLRLQDNNLTGKIPPTFGYLASLRRVSLANNKLEGAIPTSLGNLQDLTELYLNGNQLSGQIPKSISQLSQLIFLSISRNQ 267 (550)
Q Consensus 188 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 267 (550)
+|++++|.+.... .+..+++|++|++++|.+... + .+..+++|++|+++ +.+... ..+..+++|+.|++++|.
T Consensus 116 ~L~L~~n~l~~~~--~~~~l~~L~~L~l~~n~l~~~-~-~~~~l~~L~~L~l~-~~~~~~--~~~~~l~~L~~L~l~~n~ 188 (466)
T 1o6v_A 116 GLTLFNNQITDID--PLKNLTNLNRLELSSNTISDI-S-ALSGLTSLQQLSFG-NQVTDL--KPLANLTTLERLDISSNK 188 (466)
T ss_dssp EEECCSSCCCCCG--GGTTCTTCSEEEEEEEEECCC-G-GGTTCTTCSEEEEE-ESCCCC--GGGTTCTTCCEEECCSSC
T ss_pred EEECCCCCCCCCh--HHcCCCCCCEEECCCCccCCC-h-hhccCCcccEeecC-CcccCc--hhhccCCCCCEEECcCCc
Confidence 8888888776442 267778888888888877643 2 46777888888875 333322 236677777777777777
Q ss_pred ccCCCCCcccCCCCccEEEccCCcccCCccchhcccCCCCcEEEeecccccccCCccccCCCCCccEEEcccccCCCCch
Q 008876 268 IEGPLPSGMFSLQNLQTLDLSFNLLNLSSIPMWMAELPSLSRVYLAGCGIKGKIPEFFRTTPSPLQELDLSVNHLSGSIP 347 (550)
Q Consensus 268 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 347 (550)
+... ..+..+++|+.|++++|.+... . .+..+++|+.|++++|.+... ..+... ++|+.|++++|.+.+..+
T Consensus 189 l~~~--~~l~~l~~L~~L~l~~n~l~~~--~-~~~~l~~L~~L~l~~n~l~~~--~~l~~l-~~L~~L~l~~n~l~~~~~ 260 (466)
T 1o6v_A 189 VSDI--SVLAKLTNLESLIATNNQISDI--T-PLGILTNLDELSLNGNQLKDI--GTLASL-TNLTDLDLANNQISNLAP 260 (466)
T ss_dssp CCCC--GGGGGCTTCSEEECCSSCCCCC--G-GGGGCTTCCEEECCSSCCCCC--GGGGGC-TTCSEEECCSSCCCCCGG
T ss_pred CCCC--hhhccCCCCCEEEecCCccccc--c-cccccCCCCEEECCCCCcccc--hhhhcC-CCCCEEECCCCccccchh
Confidence 6632 2355667777777777654332 1 144566666666666655432 112222 225555555555543322
Q ss_pred hhhhccccccEEEccCCeeeccCCccccCCCCCcEEEccCCccccccccccccCCCCCCCCeEEEeccCCCCCCCCCCCC
Q 008876 348 AWIGSLTQLYSLNLSRNSLVSSIPETITNLQDLVLLDLHSNKLTGSISQVFKIGQRFPDGSLTYIDLSDNGFSSGIELTG 427 (550)
Q Consensus 348 ~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 427 (550)
+..+++|+.|++++|.+....+ +..+++|++|++++|+++....
T Consensus 261 --~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~-------------------------------- 304 (466)
T 1o6v_A 261 --LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP-------------------------------- 304 (466)
T ss_dssp --GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--------------------------------
T ss_pred --hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--------------------------------
Confidence 4445555555555555443322 4445555555555554443222
Q ss_pred CCCcccccEEeccCCcccCcCCcccccccccceeeCCCCccceeCCCcCCCCCCCcEEECcCccccccCCCcccCCCcCc
Q 008876 428 GGGQTGIRFLNLSRNVLEGQIPVSVGRLRSLRSLDLSYNKLGYVLPGSLANESSLETLKLQNNRFTGRIPSEYLKLKKLK 507 (550)
Q Consensus 428 ~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 507 (550)
+..+++|+.|++++|.+++..+ +..+++|++|++++|++++. ..+.++++|++|++++|.+.+..| +..+++|+
T Consensus 305 ~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~ 378 (466)
T 1o6v_A 305 ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRIT 378 (466)
T ss_dssp GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCC
T ss_pred hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCC
Confidence 3344555555555555553332 44555555555555555543 244555555555555555554433 45555555
Q ss_pred eeecCCccccc
Q 008876 508 ELDLSHNLLVG 518 (550)
Q Consensus 508 ~L~l~~n~~~~ 518 (550)
.|++++|++++
T Consensus 379 ~L~l~~n~~~~ 389 (466)
T 1o6v_A 379 QLGLNDQAWTN 389 (466)
T ss_dssp EEECCCEEEEC
T ss_pred EEeccCCcccC
Confidence 55555555554
No 32
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=2.2e-31 Score=267.08 Aligned_cols=345 Identities=28% Similarity=0.418 Sum_probs=156.7
Q ss_pred cCcccEeeCCCCCCCCcCCCCCccCCCCCcEEeCCCccCCCCCchhhhhccCCcEEEcCCCcCCCcccccccCCcccchh
Q 008876 12 LTSLEVLDLGGLVDLTGIIPPSIGCLQNLKKLYLYGNKLSGSVPESISKLLKLEELHLHENRLSGTLSSSLGNLKNINQL 91 (550)
Q Consensus 12 ~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 91 (550)
+++++.|+++++ .+. .+| .+..+++|++|+++++.+++. +. +..+++|++|++++|.+....+ +.++++|++|
T Consensus 45 l~~l~~L~l~~~-~i~-~l~-~~~~l~~L~~L~Ls~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L 117 (466)
T 1o6v_A 45 LDQVTTLQADRL-GIK-SID-GVEYLNNLTQINFSNNQLTDI-TP-LKNLTKLVDILMNNNQIADITP--LANLTNLTGL 117 (466)
T ss_dssp HHTCCEEECCSS-CCC-CCT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEE
T ss_pred hccccEEecCCC-CCc-cCc-chhhhcCCCEEECCCCccCCc-hh-hhccccCCEEECCCCccccChh--hcCCCCCCEE
Confidence 445555555542 222 232 245555555555555555432 22 5555555555555555442222 4555555555
Q ss_pred hccccccCccCchhccCCCCCCEEEcccccCccccchhhcCCCCcCeEeccCccccCcCCcccCCCCCCCEEEccCCccc
Q 008876 92 LMHTNQFTGVIPDSFTNLTNLVRLDLHCNYLNGYIPEKIGELQLLEQLDFSNNLLRGKLPPSLCNLTVISVLYLDNNKLE 171 (550)
Q Consensus 92 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 171 (550)
++++|.+.+. + .+..+++|++|++++|.+... ..+..+++|++|++.+ .+... ..+..+++|+.|++++|.+.
T Consensus 118 ~L~~n~l~~~-~-~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~-~~~~~--~~~~~l~~L~~L~l~~n~l~ 190 (466)
T 1o6v_A 118 TLFNNQITDI-D-PLKNLTNLNRLELSSNTISDI--SALSGLTSLQQLSFGN-QVTDL--KPLANLTTLERLDISSNKVS 190 (466)
T ss_dssp ECCSSCCCCC-G-GGTTCTTCSEEEEEEEEECCC--GGGTTCTTCSEEEEEE-SCCCC--GGGTTCTTCCEEECCSSCCC
T ss_pred ECCCCCCCCC-h-HHcCCCCCCEEECCCCccCCC--hhhccCCcccEeecCC-cccCc--hhhccCCCCCEEECcCCcCC
Confidence 5555554432 1 145555555555555544432 1244555555555532 22211 12444455555555554443
Q ss_pred ccccCCCCCCCCCCccEEEcCCCcccccCCCCccCCCCCcEEEcccCcccCcchhhccCCCCCcEEEecCccccCCCccc
Q 008876 172 GAIPFPSSPGQMPSLGFLRLQDNNLTGKIPPTFGYLASLRRVSLANNKLEGAIPTSLGNLQDLTELYLNGNQLSGQIPKS 251 (550)
Q Consensus 172 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~ 251 (550)
.. ..+..+++|++|++++|.+....+ ++.+++|++|++++|.+... ..
T Consensus 191 ~~----------------------------~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~ 238 (466)
T 1o6v_A 191 DI----------------------------SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GT 238 (466)
T ss_dssp CC----------------------------GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GG
T ss_pred CC----------------------------hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hh
Confidence 22 123444444444444444443222 33444455555554444321 23
Q ss_pred ccCCCcccEEEccCCcccCCCCCcccCCCCccEEEccCCcccCCccchhcccCCCCcEEEeecccccccCCccccCCCCC
Q 008876 252 ISQLSQLIFLSISRNQIEGPLPSGMFSLQNLQTLDLSFNLLNLSSIPMWMAELPSLSRVYLAGCGIKGKIPEFFRTTPSP 331 (550)
Q Consensus 252 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 331 (550)
+..+++|+.|++++|.+....+ +..+++|+.|++++|.+... +. +..+++|+.|++++|.+.+..+ +... ++
T Consensus 239 l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~-~~~l~~L~~L~L~~n~l~~~~~--~~~l-~~ 310 (466)
T 1o6v_A 239 LASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNI--SP-LAGLTALTNLELNENQLEDISP--ISNL-KN 310 (466)
T ss_dssp GGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCC--GG-GTTCTTCSEEECCSSCCSCCGG--GGGC-TT
T ss_pred hhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcc--cc-ccCCCccCeEEcCCCcccCchh--hcCC-CC
Confidence 3444455555555544442211 33444555555554433321 11 3444555555555554443222 2222 23
Q ss_pred ccEEEcccccCCCCchhhhhccccccEEEccCCeeeccCCccccCCCCCcEEEccCCccccccccccccCCCCCCCCeEE
Q 008876 332 LQELDLSVNHLSGSIPAWIGSLTQLYSLNLSRNSLVSSIPETITNLQDLVLLDLHSNKLTGSISQVFKIGQRFPDGSLTY 411 (550)
Q Consensus 332 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~L~~ 411 (550)
|+.|++++|.+.+..+ +..+++|+.|++++|.+.+. ..+..+++|++|++++|++++..+ +... ++|+.
T Consensus 311 L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l-----~~L~~ 379 (466)
T 1o6v_A 311 LTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANL-----TRITQ 379 (466)
T ss_dssp CSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTC-----TTCCE
T ss_pred CCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcC-----CCCCE
Confidence 5555555555543332 44555555555555555433 244455555555555555544332 1111 45555
Q ss_pred EeccCCCCCC
Q 008876 412 IDLSDNGFSS 421 (550)
Q Consensus 412 L~l~~~~~~~ 421 (550)
|++++|.+++
T Consensus 380 L~l~~n~~~~ 389 (466)
T 1o6v_A 380 LGLNDQAWTN 389 (466)
T ss_dssp EECCCEEEEC
T ss_pred EeccCCcccC
Confidence 5555555543
No 33
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=3.2e-31 Score=263.44 Aligned_cols=211 Identities=24% Similarity=0.244 Sum_probs=117.4
Q ss_pred CCccCCCCCcEEeCCCccCCCCCchhhhhccCCcEEEcCCCcCCCcccccccCCcccchhhccccccCccCchhccCCCC
Q 008876 32 PSIGCLQNLKKLYLYGNKLSGSVPESISKLLKLEELHLHENRLSGTLSSSLGNLKNINQLLMHTNQFTGVIPDSFTNLTN 111 (550)
Q Consensus 32 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~ 111 (550)
..++++++|++|+++++.+++ +| .+..+++|++|++++|.+... + +..+++|++|++++|.+.+. .+..+++
T Consensus 36 ~~~~~l~~L~~L~Ls~n~l~~-~~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~---~~~~l~~ 107 (457)
T 3bz5_A 36 ISEEQLATLTSLDCHNSSITD-MT-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL---DVTPLTK 107 (457)
T ss_dssp EEHHHHTTCCEEECCSSCCCC-CT-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC---CCTTCTT
T ss_pred cChhHcCCCCEEEccCCCccc-Ch-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee---ecCCCCc
Confidence 356667777777777777764 34 567777777777777776633 2 56667777777777766643 2666677
Q ss_pred CCEEEcccccCccccchhhcCCCCcCeEeccCccccCcCCcccCCCCCCCEEEccCCcccccccCCCCCCCCCCccEEEc
Q 008876 112 LVRLDLHCNYLNGYIPEKIGELQLLEQLDFSNNLLRGKLPPSLCNLTVISVLYLDNNKLEGAIPFPSSPGQMPSLGFLRL 191 (550)
Q Consensus 112 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l 191 (550)
|++|++++|.+... + +..+++|++|++++|.+.+. .+..+++|++|++++|...+.. .+..+++|+.|++
T Consensus 108 L~~L~L~~N~l~~l-~--~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~----~~~~l~~L~~L~l 177 (457)
T 3bz5_A 108 LTYLNCDTNKLTKL-D--VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL----DVTPQTQLTTLDC 177 (457)
T ss_dssp CCEEECCSSCCSCC-C--CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC----CCTTCTTCCEEEC
T ss_pred CCEEECCCCcCCee-c--CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCccccc----ccccCCcCCEEEC
Confidence 77777777666543 1 56666666666666666532 2555666666666665433221 2444555555555
Q ss_pred CCCcccccCCCCccCCCCCcEEEcccCcccCcchhhccCCCCCcEEEecCccccCCCcccccCCCcccEEEccCCccc
Q 008876 192 QDNNLTGKIPPTFGYLASLRRVSLANNKLEGAIPTSLGNLQDLTELYLNGNQLSGQIPKSISQLSQLIFLSISRNQIE 269 (550)
Q Consensus 192 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 269 (550)
++|.+... + +..+++|+.|++++|.+... .++.+++|++|++++|+++. .+ +..+++|+.|++++|.+.
T Consensus 178 s~n~l~~l-~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~ 246 (457)
T 3bz5_A 178 SFNKITEL-D--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLT 246 (457)
T ss_dssp CSSCCCCC-C--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCS
T ss_pred CCCcccee-c--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCC
Confidence 55555431 1 44444555555555544432 13444444444444444442 11 334444444444444443
No 34
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.98 E-value=2.8e-31 Score=260.27 Aligned_cols=312 Identities=19% Similarity=0.182 Sum_probs=166.4
Q ss_pred CCCccEEEcCCCcccccCCCCccCCCCCcEEEcccCcccCcchhhccCCCCCcEEEecCccccCCCcccccCCCcccEEE
Q 008876 183 MPSLGFLRLQDNNLTGKIPPTFGYLASLRRVSLANNKLEGAIPTSLGNLQDLTELYLNGNQLSGQIPKSISQLSQLIFLS 262 (550)
Q Consensus 183 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~ 262 (550)
+++++.+++.++.+....+..+..+++|++|+++++.+....+..+..+++|++|++++|.+....+..+..+++|++|+
T Consensus 44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 123 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 123 (390)
T ss_dssp GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred cCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEE
Confidence 46777777777777655444566677777777777777655555677777777777777777665566667777777777
Q ss_pred ccCCcccCCCCCcccCCCCccEEEccCCcccCCccchhcccCCCCcEEEeecccccccCCccccCCCCCccEEEcccccC
Q 008876 263 ISRNQIEGPLPSGMFSLQNLQTLDLSFNLLNLSSIPMWMAELPSLSRVYLAGCGIKGKIPEFFRTTPSPLQELDLSVNHL 342 (550)
Q Consensus 263 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 342 (550)
+++|.+.......+..+++|++|++++|.+... .+..+..+++|+.|++++|.+..... .. .++|+.+++++|.+
T Consensus 124 L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~---~~-l~~L~~L~l~~n~l 198 (390)
T 3o6n_A 124 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERI-EDDTFQATTSLQNLQLSSNRLTHVDL---SL-IPSLFHANVSYNLL 198 (390)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBC-CTTTTSSCTTCCEEECCSSCCSBCCG---GG-CTTCSEEECCSSCC
T ss_pred CCCCccCcCCHHHhcCCCCCcEEECCCCccCcc-ChhhccCCCCCCEEECCCCcCCcccc---cc-ccccceeecccccc
Confidence 777777633333345667777777777654322 23345556666666666665543311 11 12255555555544
Q ss_pred CCCchhhhhccccccEEEccCCeeeccCCccccCCCCCcEEEccCCccccccccccccCCCCCCCCeEEEeccCCCCCCC
Q 008876 343 SGSIPAWIGSLTQLYSLNLSRNSLVSSIPETITNLQDLVLLDLHSNKLTGSISQVFKIGQRFPDGSLTYIDLSDNGFSSG 422 (550)
Q Consensus 343 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 422 (550)
.. +...++|+.|++++|.+..... ...++|++|++++|.++..
T Consensus 199 ~~-----~~~~~~L~~L~l~~n~l~~~~~---~~~~~L~~L~l~~n~l~~~----------------------------- 241 (390)
T 3o6n_A 199 ST-----LAIPIAVEELDASHNSINVVRG---PVNVELTILKLQHNNLTDT----------------------------- 241 (390)
T ss_dssp SE-----EECCSSCSEEECCSSCCCEEEC---CCCSSCCEEECCSSCCCCC-----------------------------
T ss_pred cc-----cCCCCcceEEECCCCeeeeccc---cccccccEEECCCCCCccc-----------------------------
Confidence 32 1223445555555555443311 1224455555555544432
Q ss_pred CCCCCCCCcccccEEeccCCcccCcCCcccccccccceeeCCCCccceeCCCcCCCCCCCcEEECcCccccccCCCcccC
Q 008876 423 IELTGGGGQTGIRFLNLSRNVLEGQIPVSVGRLRSLRSLDLSYNKLGYVLPGSLANESSLETLKLQNNRFTGRIPSEYLK 502 (550)
Q Consensus 423 ~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~ 502 (550)
..+..+++|++|++++|.+++..+..+..+++|++|++++|+++.. +..+..+++|++|++++|.+. .+|..+..
T Consensus 242 ---~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~ 316 (390)
T 3o6n_A 242 ---AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVAL-NLYGQPIPTLKVLDLSHNHLL-HVERNQPQ 316 (390)
T ss_dssp ---GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEE-ECSSSCCTTCCEEECCSSCCC-CCGGGHHH
T ss_pred ---HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCccc-CcccCCCCCCCEEECCCCcce-ecCccccc
Confidence 1233444455555555554444444444555555555555554432 223334445555555555444 23333444
Q ss_pred CCcCceeecCCccccccCCCCCCCCCccccCCCCCCCCCCC
Q 008876 503 LKKLKELDLSHNLLVGEIPAGKPLSDFPESSFSGNRGLCGK 543 (550)
Q Consensus 503 l~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 543 (550)
+++|++|++++|++.+ +| ...+++++++++++|||.|.|
T Consensus 317 l~~L~~L~L~~N~i~~-~~-~~~~~~L~~L~l~~N~~~~~~ 355 (390)
T 3o6n_A 317 FDRLENLYLDHNSIVT-LK-LSTHHTLKNLTLSHNDWDCNS 355 (390)
T ss_dssp HTTCSEEECCSSCCCC-CC-CCTTCCCSEEECCSSCEEHHH
T ss_pred cCcCCEEECCCCccce-eC-chhhccCCEEEcCCCCccchh
Confidence 4555555555555432 22 123344445555555554443
No 35
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.97 E-value=1.2e-30 Score=259.20 Aligned_cols=361 Identities=22% Similarity=0.193 Sum_probs=226.7
Q ss_pred cccccccCCcccchhhccccccCccCchhccCCCCCCEEEcccccCccccchhhcCCCCcCeEeccCccccCcCCcccCC
Q 008876 77 TLSSSLGNLKNINQLLMHTNQFTGVIPDSFTNLTNLVRLDLHCNYLNGYIPEKIGELQLLEQLDFSNNLLRGKLPPSLCN 156 (550)
Q Consensus 77 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~ 156 (550)
..+..+.++++|++|+++++.+.+. | ++..+++|++|++++|.+... .+..+++|++|++++|.+.+. + +..
T Consensus 33 ~~~~~~~~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~---~~~~l~~L~~L~Ls~N~l~~~-~--~~~ 104 (457)
T 3bz5_A 33 TDTISEEQLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL---DLSQNTNLTYLACDSNKLTNL-D--VTP 104 (457)
T ss_dssp TSEEEHHHHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSCC-C--CTT
T ss_pred ccccChhHcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE---ccccCCCCCEEECcCCCCcee-e--cCC
Confidence 3445666778888888888877743 4 577788888888888877754 267778888888888877643 2 677
Q ss_pred CCCCCEEEccCCcccccccCCCCCCCCCCccEEEcCCCcccccCCCCccCCCCCcEEEcccCcccCcchhhccCCCCCcE
Q 008876 157 LTVISVLYLDNNKLEGAIPFPSSPGQMPSLGFLRLQDNNLTGKIPPTFGYLASLRRVSLANNKLEGAIPTSLGNLQDLTE 236 (550)
Q Consensus 157 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~ 236 (550)
+++|++|++++|.+.+. .++.+++|++|++++|.+... .++.+++|++|++++|...... .+..+++|++
T Consensus 105 l~~L~~L~L~~N~l~~l-----~~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~ 174 (457)
T 3bz5_A 105 LTKLTYLNCDTNKLTKL-----DVSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTT 174 (457)
T ss_dssp CTTCCEEECCSSCCSCC-----CCTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCE
T ss_pred CCcCCEEECCCCcCCee-----cCCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCccccc--ccccCCcCCE
Confidence 77888888888776642 266777888888888777643 2666777788887777443333 3566777777
Q ss_pred EEecCccccCCCcccccCCCcccEEEccCCcccCCCCCcccCCCCccEEEccCCcccCCccchhcccCCCCcEEEeeccc
Q 008876 237 LYLNGNQLSGQIPKSISQLSQLIFLSISRNQIEGPLPSGMFSLQNLQTLDLSFNLLNLSSIPMWMAELPSLSRVYLAGCG 316 (550)
Q Consensus 237 L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 316 (550)
|++++|.++.. + +..+++|+.|++++|.++.. .+..+++|+.|++++|.++. ++ +..+++|+.|++++|.
T Consensus 175 L~ls~n~l~~l-~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~--ip--~~~l~~L~~L~l~~N~ 244 (457)
T 3bz5_A 175 LDCSFNKITEL-D--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE--ID--VTPLTQLTYFDCSVNP 244 (457)
T ss_dssp EECCSSCCCCC-C--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC--CC--CTTCTTCSEEECCSSC
T ss_pred EECCCCcccee-c--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc--cC--ccccCCCCEEEeeCCc
Confidence 77777777642 2 56677777777777777643 25566777777777776554 23 5566777777777776
Q ss_pred ccccCCccccCCCCCccEEEcccccCCCCchhhhhccccccEEEccCCeeeccCCccccCCCCCcEEEccCCcccccccc
Q 008876 317 IKGKIPEFFRTTPSPLQELDLSVNHLSGSIPAWIGSLTQLYSLNLSRNSLVSSIPETITNLQDLVLLDLHSNKLTGSISQ 396 (550)
Q Consensus 317 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~ 396 (550)
+.+.... ..++|+.|+++.+ +|+.+++++|......+ +..+++|+.|++++|......+.
T Consensus 245 l~~~~~~----~l~~L~~L~l~~n--------------~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~ 304 (457)
T 3bz5_A 245 LTELDVS----TLSKLTTLHCIQT--------------DLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDC 304 (457)
T ss_dssp CSCCCCT----TCTTCCEEECTTC--------------CCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEEC
T ss_pred CCCcCHH----HCCCCCEEeccCC--------------CCCEEECCCCccCCccc--ccccccCCEEECCCCcccceecc
Confidence 6654321 2223565555443 23444455554332221 34566777777777654322111
Q ss_pred ccccCCCCCCCCeEEEeccCCCCCCCCCCCCCCCcccccEEeccCCcccCcCCcccccccccceeeCCCCccceeCCCcC
Q 008876 397 VFKIGQRFPDGSLTYIDLSDNGFSSGIELTGGGGQTGIRFLNLSRNVLEGQIPVSVGRLRSLRSLDLSYNKLGYVLPGSL 476 (550)
Q Consensus 397 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l 476 (550)
.. +.|+.|++ ..+++|++|++++|.+++. .+..+++|+.|++++|++++.
T Consensus 305 ~~--------~~L~~L~l--------------~~~~~L~~L~L~~N~l~~l---~l~~l~~L~~L~l~~N~l~~l----- 354 (457)
T 3bz5_A 305 QA--------AGITELDL--------------SQNPKLVYLYLNNTELTEL---DVSHNTKLKSLSCVNAHIQDF----- 354 (457)
T ss_dssp TT--------CCCSCCCC--------------TTCTTCCEEECTTCCCSCC---CCTTCTTCSEEECCSSCCCBC-----
T ss_pred CC--------CcceEech--------------hhcccCCEEECCCCccccc---ccccCCcCcEEECCCCCCCCc-----
Confidence 00 22333322 3345677777777777653 266677777777777777641
Q ss_pred CCCCCCcEEECcCccccccCCCcccCCCcCceeecCCccccccCCCC
Q 008876 477 ANESSLETLKLQNNRFTGRIPSEYLKLKKLKELDLSHNLLVGEIPAG 523 (550)
Q Consensus 477 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~ 523 (550)
+.|..|++++|.+.+. ..+..|+.+++++|.+++.+|..
T Consensus 355 ---~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~~ 393 (457)
T 3bz5_A 355 ---SSVGKIPALNNNFEAE-----GQTITMPKETLTNNSLTIAVSPD 393 (457)
T ss_dssp ---TTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECCTT
T ss_pred ---cccccccccCCcEEec-----ceeeecCccccccCcEEEEcChh
Confidence 3445555666666543 24456666777777777777754
No 36
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.97 E-value=1.8e-30 Score=254.62 Aligned_cols=336 Identities=21% Similarity=0.231 Sum_probs=164.7
Q ss_pred CCCCCEEEcccccCccccchhhcCCCCcCeEeccCccccCcCCcccCCCCCCCEEEccCCcccccccCCCCCCCCCCccE
Q 008876 109 LTNLVRLDLHCNYLNGYIPEKIGELQLLEQLDFSNNLLRGKLPPSLCNLTVISVLYLDNNKLEGAIPFPSSPGQMPSLGF 188 (550)
Q Consensus 109 l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~ 188 (550)
++++++++++++.+..+.+..+..+++|++|+++++.+....+..+..+++|++|++++|.+.+..+ ..+..+++|++
T Consensus 44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~~~l~~L~~ 121 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPP--HVFQNVPLLTV 121 (390)
T ss_dssp GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCT--TTTTTCTTCCE
T ss_pred cCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCH--HHhcCCCCCCE
Confidence 4677777777777665544556667777777777776664444455666666666666655443221 33445555555
Q ss_pred EEcCCCcccccCCCCccCCCCCcEEEcccCcccCcchhhccCCCCCcEEEecCccccCCCcccccCCCcccEEEccCCcc
Q 008876 189 LRLQDNNLTGKIPPTFGYLASLRRVSLANNKLEGAIPTSLGNLQDLTELYLNGNQLSGQIPKSISQLSQLIFLSISRNQI 268 (550)
Q Consensus 189 L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 268 (550)
|++++|.+....+..+..+++|++|++++|.+....+..+..+ ++|+.|++++|.+
T Consensus 122 L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l------------------------~~L~~L~l~~n~l 177 (390)
T 3o6n_A 122 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQAT------------------------TSLQNLQLSSNRL 177 (390)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSC------------------------TTCCEEECCSSCC
T ss_pred EECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCC------------------------CCCCEEECCCCcC
Confidence 5555555443333333444444444444444443333334444 4444444444444
Q ss_pred cCCCCCcccCCCCccEEEccCCcccCCccchhcccCCCCcEEEeecccccccCCccccCCCCCccEEEcccccCCCCchh
Q 008876 269 EGPLPSGMFSLQNLQTLDLSFNLLNLSSIPMWMAELPSLSRVYLAGCGIKGKIPEFFRTTPSPLQELDLSVNHLSGSIPA 348 (550)
Q Consensus 269 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 348 (550)
+.. .+..+++|+.+++++|.+.. +...++|+.|+++++.+...... ...+|+.|++++|.+++. .
T Consensus 178 ~~~---~~~~l~~L~~L~l~~n~l~~------~~~~~~L~~L~l~~n~l~~~~~~----~~~~L~~L~l~~n~l~~~--~ 242 (390)
T 3o6n_A 178 THV---DLSLIPSLFHANVSYNLLST------LAIPIAVEELDASHNSINVVRGP----VNVELTILKLQHNNLTDT--A 242 (390)
T ss_dssp SBC---CGGGCTTCSEEECCSSCCSE------EECCSSCSEEECCSSCCCEEECC----CCSSCCEEECCSSCCCCC--G
T ss_pred Ccc---ccccccccceeecccccccc------cCCCCcceEEECCCCeeeecccc----ccccccEEECCCCCCccc--H
Confidence 321 12234455555555443221 11223344444444433322111 112355555555555432 2
Q ss_pred hhhccccccEEEccCCeeeccCCccccCCCCCcEEEccCCccccccccccccCCCCCCCCeEEEeccCCCCCCCCCCCCC
Q 008876 349 WIGSLTQLYSLNLSRNSLVSSIPETITNLQDLVLLDLHSNKLTGSISQVFKIGQRFPDGSLTYIDLSDNGFSSGIELTGG 428 (550)
Q Consensus 349 ~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 428 (550)
.+..+++|+.|++++|.+.+..+..+..+++|++|++++|+++.
T Consensus 243 ~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~------------------------------------ 286 (390)
T 3o6n_A 243 WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA------------------------------------ 286 (390)
T ss_dssp GGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE------------------------------------
T ss_pred HHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcc------------------------------------
Confidence 34445555555555555544444444444455555554444432
Q ss_pred CCcccccEEeccCCcccCcCCcccccccccceeeCCCCccceeCCCcCCCCCCCcEEECcCccccccCCCcccCCCcCce
Q 008876 429 GGQTGIRFLNLSRNVLEGQIPVSVGRLRSLRSLDLSYNKLGYVLPGSLANESSLETLKLQNNRFTGRIPSEYLKLKKLKE 508 (550)
Q Consensus 429 ~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 508 (550)
.+..+..+++|++|++++|+++. +|..+..+++|++|++++|.+... + +..+++|++
T Consensus 287 -------------------~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~N~i~~~-~--~~~~~~L~~ 343 (390)
T 3o6n_A 287 -------------------LNLYGQPIPTLKVLDLSHNHLLH-VERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKN 343 (390)
T ss_dssp -------------------EECSSSCCTTCCEEECCSSCCCC-CGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSE
T ss_pred -------------------cCcccCCCCCCCEEECCCCccee-cCccccccCcCCEEECCCCcccee-C--chhhccCCE
Confidence 12222334455555555555552 233344455555666665555532 1 455566666
Q ss_pred eecCCccccccCCCCCCCCCccccCCCCCCCCCCCCC
Q 008876 509 LDLSHNLLVGEIPAGKPLSDFPESSFSGNRGLCGKPL 545 (550)
Q Consensus 509 L~l~~n~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 545 (550)
|++++|++.+.-... -...++...+.+++..|.++.
T Consensus 344 L~l~~N~~~~~~~~~-~~~~~~~~~~~~~~~~c~~~~ 379 (390)
T 3o6n_A 344 LTLSHNDWDCNSLRA-LFRNVARPAVDDADQHCKIDY 379 (390)
T ss_dssp EECCSSCEEHHHHHH-HTTTCCTTTBCCCCSCCCTTC
T ss_pred EEcCCCCccchhHHH-HHHHHHhhcccccCceecccc
Confidence 666666665432211 133344555667777777643
No 37
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.97 E-value=6.2e-30 Score=246.87 Aligned_cols=305 Identities=25% Similarity=0.361 Sum_probs=143.0
Q ss_pred CCCCCCEEEccCCcccccccCCCCCCCCCCccEEEcCCCcccccCCCCccCCCCCcEEEcccCcccCcchhhccCCCCCc
Q 008876 156 NLTVISVLYLDNNKLEGAIPFPSSPGQMPSLGFLRLQDNNLTGKIPPTFGYLASLRRVSLANNKLEGAIPTSLGNLQDLT 235 (550)
Q Consensus 156 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~ 235 (550)
.+++|+.|+++++.+... ..+..+++|++|++++|.+....+ +..+++|++|++++|.+... ..+..+++|+
T Consensus 42 ~l~~L~~L~l~~~~i~~~----~~~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~~--~~~~~l~~L~ 113 (347)
T 4fmz_A 42 ELESITKLVVAGEKVASI----QGIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDI--SALQNLTNLR 113 (347)
T ss_dssp HHTTCSEEECCSSCCCCC----TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCS
T ss_pred hcccccEEEEeCCccccc----hhhhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccCc--hHHcCCCcCC
Confidence 445556666665554322 124445555555555554442211 44455555555555544422 1344445555
Q ss_pred EEEecCccccCCCcccccCCCcccEEEccCCcccCCCCCcccCCCCccEEEccCCcccCCccchhcccCCCCcEEEeecc
Q 008876 236 ELYLNGNQLSGQIPKSISQLSQLIFLSISRNQIEGPLPSGMFSLQNLQTLDLSFNLLNLSSIPMWMAELPSLSRVYLAGC 315 (550)
Q Consensus 236 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 315 (550)
+|++++|.+..... +..+++|+.|++++|...... ..+..+++|+.|++++|.+.... .+..+++
T Consensus 114 ~L~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~---~~~~l~~--------- 178 (347)
T 4fmz_A 114 ELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDL-SPLSNMTGLNYLTVTESKVKDVT---PIANLTD--------- 178 (347)
T ss_dssp EEECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCCC-GGGTTCTTCCEEECCSSCCCCCG---GGGGCTT---------
T ss_pred EEECcCCcccCchh--hccCCceeEEECCCCCCcccc-cchhhCCCCcEEEecCCCcCCch---hhccCCC---------
Confidence 55555544442211 444444444444444332211 12333444444444444322110 0223333
Q ss_pred cccccCCccccCCCCCccEEEcccccCCCCchhhhhccccccEEEccCCeeeccCCccccCCCCCcEEEccCCccccccc
Q 008876 316 GIKGKIPEFFRTTPSPLQELDLSVNHLSGSIPAWIGSLTQLYSLNLSRNSLVSSIPETITNLQDLVLLDLHSNKLTGSIS 395 (550)
Q Consensus 316 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~ 395 (550)
|++|++++|.+.+... +..+++|+.+++++|.+....+ +..+++|++|++++|+++....
T Consensus 179 ----------------L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~ 238 (347)
T 4fmz_A 179 ----------------LYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP 238 (347)
T ss_dssp ----------------CSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG
T ss_pred ----------------CCEEEccCCccccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc
Confidence 4444444444443221 4455555555555555543322 4455555555555555543332
Q ss_pred cccccCCCCCCCCeEEEeccCCCCCCCCCCCCCCCcccccEEeccCCcccCcCCcccccccccceeeCCCCccceeCCCc
Q 008876 396 QVFKIGQRFPDGSLTYIDLSDNGFSSGIELTGGGGQTGIRFLNLSRNVLEGQIPVSVGRLRSLRSLDLSYNKLGYVLPGS 475 (550)
Q Consensus 396 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~ 475 (550)
+... ++|++|++++|.+.+. ..+..+++|++|++++|.+++. ..+..+++|++|++++|++++..+..
T Consensus 239 --~~~l-----~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~ 306 (347)
T 4fmz_A 239 --LANL-----SQLTWLEIGTNQISDI---NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEV 306 (347)
T ss_dssp --GTTC-----TTCCEEECCSSCCCCC---GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHH
T ss_pred --hhcC-----CCCCEEECCCCccCCC---hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhH
Confidence 1111 3444555544444331 1244555556666666555532 34555566666666666665555555
Q ss_pred CCCCCCCcEEECcCccccccCCCcccCCCcCceeecCCcccc
Q 008876 476 LANESSLETLKLQNNRFTGRIPSEYLKLKKLKELDLSHNLLV 517 (550)
Q Consensus 476 l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 517 (550)
+.++++|++|++++|++++..| +..+++|++|++++|+++
T Consensus 307 l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 307 IGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp HHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred hhccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence 5556666666666666554333 555666666666666553
No 38
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.97 E-value=1.8e-29 Score=243.68 Aligned_cols=307 Identities=25% Similarity=0.355 Sum_probs=170.3
Q ss_pred ccCCCCCcEEeCCCccCCCCCchhhhhccCCcEEEcCCCcCCCcccccccCCcccchhhccccccCccCchhccCCCCCC
Q 008876 34 IGCLQNLKKLYLYGNKLSGSVPESISKLLKLEELHLHENRLSGTLSSSLGNLKNINQLLMHTNQFTGVIPDSFTNLTNLV 113 (550)
Q Consensus 34 l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~ 113 (550)
+..+++|++|+++++.+.. ++ .+..+++|++|++++|.+....+ +..+++|++|++++|.+... .++..+++|+
T Consensus 40 ~~~l~~L~~L~l~~~~i~~-~~-~~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~~--~~~~~l~~L~ 113 (347)
T 4fmz_A 40 QEELESITKLVVAGEKVAS-IQ-GIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDI--SALQNLTNLR 113 (347)
T ss_dssp HHHHTTCSEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCS
T ss_pred chhcccccEEEEeCCcccc-ch-hhhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccCc--hHHcCCCcCC
Confidence 4466667777777766652 23 36666777777777766653322 66666677777766666532 3466666777
Q ss_pred EEEcccccCccccchhhcCCCCcCeEeccCccccCcCCcccCCCCCCCEEEccCCcccccccCCCCCCCCCCccEEEcCC
Q 008876 114 RLDLHCNYLNGYIPEKIGELQLLEQLDFSNNLLRGKLPPSLCNLTVISVLYLDNNKLEGAIPFPSSPGQMPSLGFLRLQD 193 (550)
Q Consensus 114 ~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 193 (550)
+|++++|.+....+ +..+++|++|++++|..... +..+..+++|++|++++|.+..... +..+++|++|++++
T Consensus 114 ~L~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~----~~~l~~L~~L~l~~ 186 (347)
T 4fmz_A 114 ELYLNEDNISDISP--LANLTKMYSLNLGANHNLSD-LSPLSNMTGLNYLTVTESKVKDVTP----IANLTDLYSLSLNY 186 (347)
T ss_dssp EEECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCC-CGGGTTCTTCCEEECCSSCCCCCGG----GGGCTTCSEEECTT
T ss_pred EEECcCCcccCchh--hccCCceeEEECCCCCCccc-ccchhhCCCCcEEEecCCCcCCchh----hccCCCCCEEEccC
Confidence 77776666654322 66666666666666643322 2235555566666666555443221 34445555555555
Q ss_pred CcccccCCCCccCCCCCcEEEcccCcccCcchhhccCCCCCcEEEecCccccCCCcccccCCCcccEEEccCCcccCCCC
Q 008876 194 NNLTGKIPPTFGYLASLRRVSLANNKLEGAIPTSLGNLQDLTELYLNGNQLSGQIPKSISQLSQLIFLSISRNQIEGPLP 273 (550)
Q Consensus 194 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 273 (550)
|.+....+ +..+++|+.++++++.+....+ +..+++|++|++++|.++.... +..
T Consensus 187 n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~------------------- 241 (347)
T 4fmz_A 187 NQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LAN------------------- 241 (347)
T ss_dssp SCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTT-------------------
T ss_pred Cccccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhc-------------------
Confidence 54442211 3444445555554444442222 3444444455544444432211 334
Q ss_pred CcccCCCCccEEEccCCcccCCccchhcccCCCCcEEEeecccccccCCccccCCCCCccEEEcccccCCCCchhhhhcc
Q 008876 274 SGMFSLQNLQTLDLSFNLLNLSSIPMWMAELPSLSRVYLAGCGIKGKIPEFFRTTPSPLQELDLSVNHLSGSIPAWIGSL 353 (550)
Q Consensus 274 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 353 (550)
+++|+.|++++|.++.. ..+..+++|+.|++++|.+.+. ..+... ++|+.|++++|++.+..+..+..+
T Consensus 242 -----l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~l~~n~l~~~--~~~~~l-~~L~~L~L~~n~l~~~~~~~l~~l 310 (347)
T 4fmz_A 242 -----LSQLTWLEIGTNQISDI---NAVKDLTKLKMLNVGSNQISDI--SVLNNL-SQLNSLFLNNNQLGNEDMEVIGGL 310 (347)
T ss_dssp -----CTTCCEEECCSSCCCCC---GGGTTCTTCCEEECCSSCCCCC--GGGGGC-TTCSEEECCSSCCCGGGHHHHHTC
T ss_pred -----CCCCCEEECCCCccCCC---hhHhcCCCcCEEEccCCccCCC--hhhcCC-CCCCEEECcCCcCCCcChhHhhcc
Confidence 44455555544433221 2344455555555555544432 122222 337777777777776666777888
Q ss_pred ccccEEEccCCeeeccCCccccCCCCCcEEEccCCccc
Q 008876 354 TQLYSLNLSRNSLVSSIPETITNLQDLVLLDLHSNKLT 391 (550)
Q Consensus 354 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~ 391 (550)
++|+.|++++|++.+..+ +..+++|++|++++|+++
T Consensus 311 ~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 311 TNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp TTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred ccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence 888888888888776544 667888888888888764
No 39
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.97 E-value=3.3e-30 Score=266.37 Aligned_cols=312 Identities=18% Similarity=0.181 Sum_probs=174.8
Q ss_pred CCCccEEEcCCCcccccCCCCccCCCCCcEEEcccCcccCcchhhccCCCCCcEEEecCccccCCCcccccCCCcccEEE
Q 008876 183 MPSLGFLRLQDNNLTGKIPPTFGYLASLRRVSLANNKLEGAIPTSLGNLQDLTELYLNGNQLSGQIPKSISQLSQLIFLS 262 (550)
Q Consensus 183 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~ 262 (550)
+++++.++++++.+....+..+..+++|+.|++++|.+....+..|+.+++|++|++++|.+....+..+..+++|+.|+
T Consensus 50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 129 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 129 (597)
T ss_dssp GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEE
Confidence 45667777777766655444556666777777777766655555666667777777777666655555566666666677
Q ss_pred ccCCcccCCCCCcccCCCCccEEEccCCcccCCccchhcccCCCCcEEEeecccccccCCccccCCCCCccEEEcccccC
Q 008876 263 ISRNQIEGPLPSGMFSLQNLQTLDLSFNLLNLSSIPMWMAELPSLSRVYLAGCGIKGKIPEFFRTTPSPLQELDLSVNHL 342 (550)
Q Consensus 263 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 342 (550)
+++|.+....+..+..+++|+.|++++|.+... .+..+..+++|+.|++++|.+....
T Consensus 130 L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~L~~N~l~~~~--------------------- 187 (597)
T 3oja_B 130 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERI-EDDTFQATTSLQNLQLSSNRLTHVD--------------------- 187 (597)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBC-CTTTTTTCTTCCEEECTTSCCSBCC---------------------
T ss_pred eeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCC-ChhhhhcCCcCcEEECcCCCCCCcC---------------------
Confidence 666666633333345566666666666654322 2334455555555555555444321
Q ss_pred CCCchhhhhccccccEEEccCCeeeccCCccccCCCCCcEEEccCCccccccccccccCCCCCCCCeEEEeccCCCCCCC
Q 008876 343 SGSIPAWIGSLTQLYSLNLSRNSLVSSIPETITNLQDLVLLDLHSNKLTGSISQVFKIGQRFPDGSLTYIDLSDNGFSSG 422 (550)
Q Consensus 343 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 422 (550)
+..+++|+.+++++|.+.. +...++|+.|++++|.+........ ++|+.|++++|.+.+.
T Consensus 188 -------~~~l~~L~~L~l~~n~l~~-----l~~~~~L~~L~ls~n~l~~~~~~~~--------~~L~~L~L~~n~l~~~ 247 (597)
T 3oja_B 188 -------LSLIPSLFHANVSYNLLST-----LAIPIAVEELDASHNSINVVRGPVN--------VELTILKLQHNNLTDT 247 (597)
T ss_dssp -------GGGCTTCSEEECCSSCCSE-----EECCTTCSEEECCSSCCCEEECSCC--------SCCCEEECCSSCCCCC
T ss_pred -------hhhhhhhhhhhcccCcccc-----ccCCchhheeeccCCcccccccccC--------CCCCEEECCCCCCCCC
Confidence 2334455555555554432 1233445555555555543322211 3455555555555442
Q ss_pred CCCCCCCCcccccEEeccCCcccCcCCcccccccccceeeCCCCccceeCCCcCCCCCCCcEEECcCccccccCCCcccC
Q 008876 423 IELTGGGGQTGIRFLNLSRNVLEGQIPVSVGRLRSLRSLDLSYNKLGYVLPGSLANESSLETLKLQNNRFTGRIPSEYLK 502 (550)
Q Consensus 423 ~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~ 502 (550)
..+..+++|+.|++++|.+++..+..+..+++|+.|+|++|.++.. |..+..+++|++|++++|.+. .+|..+..
T Consensus 248 ---~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~ 322 (597)
T 3oja_B 248 ---AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVAL-NLYGQPIPTLKVLDLSHNHLL-HVERNQPQ 322 (597)
T ss_dssp ---GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEE-ECSSSCCTTCCEEECCSSCCC-CCGGGHHH
T ss_pred ---hhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCC-CcccccCCCCcEEECCCCCCC-ccCccccc
Confidence 2345556666666666666655566666666666666666666643 334445566666666666665 34555555
Q ss_pred CCcCceeecCCccccccCCCCCCCCCccccCCCCCCCCCCC
Q 008876 503 LKKLKELDLSHNLLVGEIPAGKPLSDFPESSFSGNRGLCGK 543 (550)
Q Consensus 503 l~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 543 (550)
+++|+.|++++|.+.+. | ...++.++++++++|||.|.|
T Consensus 323 l~~L~~L~L~~N~l~~~-~-~~~~~~L~~L~l~~N~~~~~~ 361 (597)
T 3oja_B 323 FDRLENLYLDHNSIVTL-K-LSTHHTLKNLTLSHNDWDCNS 361 (597)
T ss_dssp HTTCSEEECCSSCCCCC-C-CCTTCCCSEEECCSSCEEHHH
T ss_pred CCCCCEEECCCCCCCCc-C-hhhcCCCCEEEeeCCCCCChh
Confidence 66666666666666532 3 223455666666666666544
No 40
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.97 E-value=6.9e-30 Score=241.69 Aligned_cols=259 Identities=33% Similarity=0.534 Sum_probs=169.5
Q ss_pred cccEEEccCCcccC--CCCCcccCCCCccEEEccC-CcccCCccchhcccCCCCcEEEeecccccccCCccccCCCCCcc
Q 008876 257 QLIFLSISRNQIEG--PLPSGMFSLQNLQTLDLSF-NLLNLSSIPMWMAELPSLSRVYLAGCGIKGKIPEFFRTTPSPLQ 333 (550)
Q Consensus 257 ~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~ 333 (550)
+++.|+++++.+.. .++..+..+++|++|++++ +.+.. .++..+..+++|++|++++|.+.+..+..+..... |+
T Consensus 51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~-~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~-L~ 128 (313)
T 1ogq_A 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVG-PIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKT-LV 128 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEES-CCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTT-CC
T ss_pred eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccc-cCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCC-CC
Confidence 34444444444443 3444444445555555542 33221 13334444444444444444444333333333222 44
Q ss_pred EEEcccccCCCCchhhhhccccccEEEccCCeeeccCCccccCCC-CCcEEEccCCccccccccccccCCCCCCCCeEEE
Q 008876 334 ELDLSVNHLSGSIPAWIGSLTQLYSLNLSRNSLVSSIPETITNLQ-DLVLLDLHSNKLTGSISQVFKIGQRFPDGSLTYI 412 (550)
Q Consensus 334 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~-~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~L~~L 412 (550)
+|++++|.+.+..+..+..+++|++|++++|.+....+..+..++ +|++|++++|+++
T Consensus 129 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~--------------------- 187 (313)
T 1ogq_A 129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT--------------------- 187 (313)
T ss_dssp EEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEE---------------------
T ss_pred EEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeee---------------------
Confidence 444444444434444444455555555555554444444444444 4555555544443
Q ss_pred eccCCCCCCCCCCCCCCCcccccEEeccCCcccCcCCcccccccccceeeCCCCccceeCCCcCCCCCCCcEEECcCccc
Q 008876 413 DLSDNGFSSGIELTGGGGQTGIRFLNLSRNVLEGQIPVSVGRLRSLRSLDLSYNKLGYVLPGSLANESSLETLKLQNNRF 492 (550)
Q Consensus 413 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~~ 492 (550)
+..+. .+..+. |++|++++|.+++..+..+..+++|+.|++++|.++...+. +..+++|++|++++|.+
T Consensus 188 --------~~~~~-~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l 256 (313)
T 1ogq_A 188 --------GKIPP-TFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRI 256 (313)
T ss_dssp --------EECCG-GGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCC
T ss_pred --------ccCCh-HHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcc
Confidence 32221 233344 88889999988888888999999999999999999866654 77899999999999999
Q ss_pred cccCCCcccCCCcCceeecCCccccccCCCCCCCCCccccCCCCCCCCCCCCCCCCC
Q 008876 493 TGRIPSEYLKLKKLKELDLSHNLLVGEIPAGKPLSDFPESSFSGNRGLCGKPLTACR 549 (550)
Q Consensus 493 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 549 (550)
.+.+|..+..+++|++|++++|.+++.+|....++.++++++.+||++|+.++..|+
T Consensus 257 ~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~~lc~~p~~~C~ 313 (313)
T 1ogq_A 257 YGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPLPACT 313 (313)
T ss_dssp EECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEESTTSSCCC
T ss_pred cCcCChHHhcCcCCCEEECcCCcccccCCCCccccccChHHhcCCCCccCCCCCCCC
Confidence 989999999999999999999999999999988999999999999999999999996
No 41
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.97 E-value=2.9e-29 Score=259.25 Aligned_cols=242 Identities=21% Similarity=0.253 Sum_probs=123.9
Q ss_pred CCCCCEEEcccccCccccchhhcCCCCcCeEeccCccccCcCCcccCCCCCCCEEEccCCcccccccCCCCCCCCCCccE
Q 008876 109 LTNLVRLDLHCNYLNGYIPEKIGELQLLEQLDFSNNLLRGKLPPSLCNLTVISVLYLDNNKLEGAIPFPSSPGQMPSLGF 188 (550)
Q Consensus 109 l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~ 188 (550)
+++++.++++++.+..+.+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..+ ..++.+++|++
T Consensus 50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~~~l~~L~~ 127 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPP--HVFQNVPLLTV 127 (597)
T ss_dssp GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCT--TTTTTCTTCCE
T ss_pred CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCH--HHHcCCCCCCE
Confidence 4567777777776665555556667777777777776665555556666666666666665543222 33455555555
Q ss_pred EEcCCCcccccCCCCccCCCCCcEEEcccCcccCcchhhccCCCCCcEEEecCccccCCCcccccCCCcccEEEccCCcc
Q 008876 189 LRLQDNNLTGKIPPTFGYLASLRRVSLANNKLEGAIPTSLGNLQDLTELYLNGNQLSGQIPKSISQLSQLIFLSISRNQI 268 (550)
Q Consensus 189 L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 268 (550)
|++++|.+....+..+..+++|++|++++|.+....+..++.+++|++|++++|.++..
T Consensus 128 L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~--------------------- 186 (597)
T 3oja_B 128 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV--------------------- 186 (597)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC---------------------
T ss_pred EEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc---------------------
Confidence 55555555533333344455555555555544444444444444444444444444321
Q ss_pred cCCCCCcccCCCCccEEEccCCcccCCccchhcccCCCCcEEEeecccccccCCccccCCCCCccEEEcccccCCCCchh
Q 008876 269 EGPLPSGMFSLQNLQTLDLSFNLLNLSSIPMWMAELPSLSRVYLAGCGIKGKIPEFFRTTPSPLQELDLSVNHLSGSIPA 348 (550)
Q Consensus 269 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 348 (550)
.+..+++|+.|++++|.+.. +...++|+.|++++|.+...... ...+|+.|++++|.+++. .
T Consensus 187 ------~~~~l~~L~~L~l~~n~l~~------l~~~~~L~~L~ls~n~l~~~~~~----~~~~L~~L~L~~n~l~~~--~ 248 (597)
T 3oja_B 187 ------DLSLIPSLFHANVSYNLLST------LAIPIAVEELDASHNSINVVRGP----VNVELTILKLQHNNLTDT--A 248 (597)
T ss_dssp ------CGGGCTTCSEEECCSSCCSE------EECCTTCSEEECCSSCCCEEECS----CCSCCCEEECCSSCCCCC--G
T ss_pred ------ChhhhhhhhhhhcccCcccc------ccCCchhheeeccCCcccccccc----cCCCCCEEECCCCCCCCC--h
Confidence 12234445555554443221 11223344444444443322111 112366666666655532 3
Q ss_pred hhhccccccEEEccCCeeeccCCccccCCCCCcEEEccCCccc
Q 008876 349 WIGSLTQLYSLNLSRNSLVSSIPETITNLQDLVLLDLHSNKLT 391 (550)
Q Consensus 349 ~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~ 391 (550)
.+..+++|+.|++++|.+....+..+..+++|++|++++|.++
T Consensus 249 ~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 291 (597)
T 3oja_B 249 WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV 291 (597)
T ss_dssp GGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCC
T ss_pred hhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCC
Confidence 4455556666666666555554555555555555555555443
No 42
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.96 E-value=9.6e-27 Score=222.57 Aligned_cols=289 Identities=20% Similarity=0.254 Sum_probs=176.9
Q ss_pred cccEeeCCCCCCCCcCCCCCccCCCCCcEEeCCCccCCCCCchhhhhccCCcEEEcCCCcCCCcccccccCCcccchhhc
Q 008876 14 SLEVLDLGGLVDLTGIIPPSIGCLQNLKKLYLYGNKLSGSVPESISKLLKLEELHLHENRLSGTLSSSLGNLKNINQLLM 93 (550)
Q Consensus 14 ~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 93 (550)
++++++++++ .+ ..+|..+. +++++|+++++.+++..+..|.++++|++|++++|.+....|..+..+++|++|++
T Consensus 32 ~l~~l~~~~~-~l-~~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (330)
T 1xku_A 32 HLRVVQCSDL-GL-EKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL 107 (330)
T ss_dssp ETTEEECTTS-CC-CSCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred CCeEEEecCC-Cc-cccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEEC
Confidence 6677777662 22 24554443 56777777777777555556777777777777777776555667777777777777
Q ss_pred cccccCccCchhccCCCCCCEEEcccccCccccchhhcCCCCcCeEeccCccccC--cCCcccCCCCCCCEEEccCCccc
Q 008876 94 HTNQFTGVIPDSFTNLTNLVRLDLHCNYLNGYIPEKIGELQLLEQLDFSNNLLRG--KLPPSLCNLTVISVLYLDNNKLE 171 (550)
Q Consensus 94 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~--~~~~~l~~~~~L~~L~l~~~~~~ 171 (550)
++|.+.. .|..+. ++|++|++++|.+....+..+..+++|+.|++++|.+.. ..+..+..+++|+.|++++|.+.
T Consensus 108 s~n~l~~-l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~ 184 (330)
T 1xku_A 108 SKNQLKE-LPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT 184 (330)
T ss_dssp CSSCCSB-CCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC
T ss_pred CCCcCCc-cChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc
Confidence 7777663 333332 577777777777766666667777777777777776642 44555666777777777777655
Q ss_pred ccccCCCCCCCCCCccEEEcCCCcccccCCCCccCCCCCcEEEcccCcccCcchhhccCCCCCcEEEecCccccCCCccc
Q 008876 172 GAIPFPSSPGQMPSLGFLRLQDNNLTGKIPPTFGYLASLRRVSLANNKLEGAIPTSLGNLQDLTELYLNGNQLSGQIPKS 251 (550)
Q Consensus 172 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~ 251 (550)
... ..+ .++|++|++++|.+....+..+..+++|++|++++|.+....+..+..+++|++|++++|.++ ..+..
T Consensus 185 ~l~---~~~--~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~ 258 (330)
T 1xku_A 185 TIP---QGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGG 258 (330)
T ss_dssp SCC---SSC--CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTT
T ss_pred cCC---ccc--cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChh
Confidence 321 111 266777777777666555556666667777777777666555555666667777777776666 34445
Q ss_pred ccCCCcccEEEccCCcccCCCCCcccC------CCCccEEEccCCcccCCc-cchhcccCCCCcEEEeecc
Q 008876 252 ISQLSQLIFLSISRNQIEGPLPSGMFS------LQNLQTLDLSFNLLNLSS-IPMWMAELPSLSRVYLAGC 315 (550)
Q Consensus 252 l~~~~~L~~L~l~~~~~~~~~~~~~~~------~~~L~~L~l~~~~~~~~~-~~~~~~~~~~L~~L~l~~~ 315 (550)
+..+++|+.|++++|.++......+.. .+.++.+++.+|++.... .+..+..++.++.+++++|
T Consensus 259 l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 259 LADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp TTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC---
T ss_pred hccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEeccc
Confidence 566666777777766666433333321 245666666666543322 2234445555555555543
No 43
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.96 E-value=1.2e-31 Score=269.65 Aligned_cols=264 Identities=20% Similarity=0.106 Sum_probs=126.9
Q ss_pred CcccchhhccccccCccCchh-ccCCCCCCEEEcccccCccc----cchhhcCCCCcCeEeccCccccCcCCccc-CCCC
Q 008876 85 LKNINQLLMHTNQFTGVIPDS-FTNLTNLVRLDLHCNYLNGY----IPEKIGELQLLEQLDFSNNLLRGKLPPSL-CNLT 158 (550)
Q Consensus 85 l~~L~~L~l~~~~~~~~~~~~-l~~l~~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~l~~~~~~~~~~~~l-~~~~ 158 (550)
.++|++|+++++.+.+..... +..+++|++|++++|.+... .+..+..+++|++|++++|.+.+..+..+ ..++
T Consensus 2 ~~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~ 81 (461)
T 1z7x_W 2 SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQ 81 (461)
T ss_dssp CEEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTC
T ss_pred CccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHh
Confidence 357788888888776543333 67778888888888877642 34556677888888888877653322222 1222
Q ss_pred ----CCCEEEccCCcccccc--cCCCCCCCCCCccEEEcCCCcccccCCCCccCCCCCcEEEcccCcccCcchhhccCCC
Q 008876 159 ----VISVLYLDNNKLEGAI--PFPSSPGQMPSLGFLRLQDNNLTGKIPPTFGYLASLRRVSLANNKLEGAIPTSLGNLQ 232 (550)
Q Consensus 159 ----~L~~L~l~~~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~ 232 (550)
+|++|++++|.+.... .++..+..+++|++|++++|.+.......+.. ......+
T Consensus 82 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~-------------------~l~~~~~ 142 (461)
T 1z7x_W 82 TPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCE-------------------GLLDPQC 142 (461)
T ss_dssp STTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHH-------------------HHTSTTC
T ss_pred hCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHH-------------------HHhcCCC
Confidence 4666666666544211 11233444555555555555443211110100 0011123
Q ss_pred CCcEEEecCccccCCC----cccccCCCcccEEEccCCcccCCCCCccc-----CCCCccEEEccCCcccCCc---cchh
Q 008876 233 DLTELYLNGNQLSGQI----PKSISQLSQLIFLSISRNQIEGPLPSGMF-----SLQNLQTLDLSFNLLNLSS---IPMW 300 (550)
Q Consensus 233 ~L~~L~l~~~~~~~~~----~~~l~~~~~L~~L~l~~~~~~~~~~~~~~-----~~~~L~~L~l~~~~~~~~~---~~~~ 300 (550)
+|++|++++|.++... ...+..+++|+.|++++|.+.+.....+. ..++|++|++++|.++... ++..
T Consensus 143 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 222 (461)
T 1z7x_W 143 RLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGI 222 (461)
T ss_dssp CCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHH
T ss_pred cceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHH
Confidence 4555555555444321 22233344555555555444321111111 1345666666655544332 3334
Q ss_pred cccCCCCcEEEeecccccccCCc----cccCCCCCccEEEcccccCCCC----chhhhhccccccEEEccCCeee
Q 008876 301 MAELPSLSRVYLAGCGIKGKIPE----FFRTTPSPLQELDLSVNHLSGS----IPAWIGSLTQLYSLNLSRNSLV 367 (550)
Q Consensus 301 ~~~~~~L~~L~l~~~~~~~~~~~----~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~ 367 (550)
+..+++|++|++++|.+.+.... .+....++|++|++++|.++.. +...+..+++|+.|++++|.+.
T Consensus 223 l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~ 297 (461)
T 1z7x_W 223 VASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELG 297 (461)
T ss_dssp HHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCH
T ss_pred HHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCc
Confidence 44555555555555544332111 1111122355555555555432 2233344555555555555544
No 44
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.96 E-value=1.9e-31 Score=268.06 Aligned_cols=90 Identities=24% Similarity=0.331 Sum_probs=38.2
Q ss_pred ccCCCCCcEEeCCCccCCCC----CchhhhhccCCcEEEcCCCcCCCcccccc-cCCc----ccchhhccccccCc----
Q 008876 34 IGCLQNLKKLYLYGNKLSGS----VPESISKLLKLEELHLHENRLSGTLSSSL-GNLK----NINQLLMHTNQFTG---- 100 (550)
Q Consensus 34 l~~l~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~~~~~~~~~-~~l~----~L~~L~l~~~~~~~---- 100 (550)
+..+++|++|++++|.+++. ++..+..+++|++|++++|.+....+..+ ..++ +|++|++++|.+..
T Consensus 24 ~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~ 103 (461)
T 1z7x_W 24 LPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCG 103 (461)
T ss_dssp HHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHH
T ss_pred HhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHH
Confidence 34455555555555554421 23333444555555555554432222111 1222 34444444444442
Q ss_pred cCchhccCCCCCCEEEcccccCc
Q 008876 101 VIPDSFTNLTNLVRLDLHCNYLN 123 (550)
Q Consensus 101 ~~~~~l~~l~~L~~L~l~~~~~~ 123 (550)
.++.++..+++|++|++++|.+.
T Consensus 104 ~l~~~l~~~~~L~~L~Ls~n~i~ 126 (461)
T 1z7x_W 104 VLSSTLRTLPTLQELHLSDNLLG 126 (461)
T ss_dssp HHHHHTTSCTTCCEEECCSSBCH
T ss_pred HHHHHHccCCceeEEECCCCcCc
Confidence 12334444444444444444443
No 45
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.95 E-value=1.7e-30 Score=269.72 Aligned_cols=256 Identities=18% Similarity=0.132 Sum_probs=151.8
Q ss_pred CccccccCcccEeeCCCCCCCCc--CCCCCcc------------CCCCCcEEeCCCccCCCCCchhhhh-ccC-CcEEEc
Q 008876 6 SPSISLLTSLEVLDLGGLVDLTG--IIPPSIG------------CLQNLKKLYLYGNKLSGSVPESISK-LLK-LEELHL 69 (550)
Q Consensus 6 ~~~~~~~~~L~~L~l~~~~~~~~--~~~~~l~------------~l~~L~~L~l~~~~~~~~~~~~~~~-l~~-L~~L~l 69 (550)
+..+..+++|++|++++|..+.+ .+|.... .+++|++|+++++.+++..+..+.. +++ |++|++
T Consensus 66 ~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L 145 (592)
T 3ogk_B 66 DRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKL 145 (592)
T ss_dssp HHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEE
T ss_pred HHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEEC
Confidence 34456788899999988654321 2222222 6788888888888777656666665 444 888888
Q ss_pred CCCcC-CC-cccccccCCcccchhhccccccCcc----CchhccCCCCCCEEEcccccCcc----ccchhhcCCCCcCeE
Q 008876 70 HENRL-SG-TLSSSLGNLKNINQLLMHTNQFTGV----IPDSFTNLTNLVRLDLHCNYLNG----YIPEKIGELQLLEQL 139 (550)
Q Consensus 70 ~~~~~-~~-~~~~~~~~l~~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~l~~~~~~~----~~~~~l~~l~~L~~L 139 (550)
++|.. .. ..+.....+++|++|++++|.+.+. ++..+..+++|++|+++++.+.. ..+..+..+++|++|
T Consensus 146 ~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L 225 (592)
T 3ogk_B 146 DKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSV 225 (592)
T ss_dssp ESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEE
T ss_pred cCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEE
Confidence 88752 11 1122234678888888888876544 22334567888888888877752 233345567888888
Q ss_pred eccCccccCcCCcccCCCCCCCEEEccCCccc-ccccCCCCCCCCCCccEEEcCCCcccccCCCCccCCCCCcEEEcccC
Q 008876 140 DFSNNLLRGKLPPSLCNLTVISVLYLDNNKLE-GAIPFPSSPGQMPSLGFLRLQDNNLTGKIPPTFGYLASLRRVSLANN 218 (550)
Q Consensus 140 ~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 218 (550)
+++++.+. ..+..+..+++|++|+++..... ........+..+++|+.+++.+.... ..+..+..+++|++|++++|
T Consensus 226 ~L~~~~~~-~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~l~~~~~~~~~L~~L~Ls~~ 303 (592)
T 3ogk_B 226 KVGDFEIL-ELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPN-EMPILFPFAAQIRKLDLLYA 303 (592)
T ss_dssp ECSSCBGG-GGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTT-TGGGGGGGGGGCCEEEETTC
T ss_pred eccCccHH-HHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchh-HHHHHHhhcCCCcEEecCCC
Confidence 88887766 35566777788888887753221 11223345566667777766654222 33344455566666666666
Q ss_pred cccCcch-hhccCCCCCcEEEecCccccCC-CcccccCCCcccEEEcc
Q 008876 219 KLEGAIP-TSLGNLQDLTELYLNGNQLSGQ-IPKSISQLSQLIFLSIS 264 (550)
Q Consensus 219 ~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~-~~~~l~~~~~L~~L~l~ 264 (550)
.+..... ..+..+++|++|+++. .+.+. .......+++|+.|+++
T Consensus 304 ~l~~~~~~~~~~~~~~L~~L~L~~-~~~~~~l~~~~~~~~~L~~L~L~ 350 (592)
T 3ogk_B 304 LLETEDHCTLIQKCPNLEVLETRN-VIGDRGLEVLAQYCKQLKRLRIE 350 (592)
T ss_dssp CCCHHHHHHHHTTCTTCCEEEEEG-GGHHHHHHHHHHHCTTCCEEEEE
T ss_pred cCCHHHHHHHHHhCcCCCEEeccC-ccCHHHHHHHHHhCCCCCEEEee
Confidence 5432222 2245566666666652 22211 12222344555555555
No 46
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.95 E-value=6.1e-27 Score=224.04 Aligned_cols=291 Identities=23% Similarity=0.284 Sum_probs=157.6
Q ss_pred CCcEEeCCCccCCCCCchhhhhccCCcEEEcCCCcCCCcccccccCCcccchhhccccccCccCchhccCCCCCCEEEcc
Q 008876 39 NLKKLYLYGNKLSGSVPESISKLLKLEELHLHENRLSGTLSSSLGNLKNINQLLMHTNQFTGVIPDSFTNLTNLVRLDLH 118 (550)
Q Consensus 39 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 118 (550)
+++.++++++.++ .+|..+. ++|++|++++|.+....+..+..+++|++|++++|.+....+.++..+++|++|+++
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 110 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS 110 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred cCCEEECCCCCcc-ccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence 5677777776665 4554442 467777777776664445566667777777777776665556666667777777777
Q ss_pred cccCccccchhhcCCCCcCeEeccCccccCcCCcccCCCCCCCEEEccCCcccccccCCCCCCCCCCccEEEcCCCcccc
Q 008876 119 CNYLNGYIPEKIGELQLLEQLDFSNNLLRGKLPPSLCNLTVISVLYLDNNKLEGAIPFPSSPGQMPSLGFLRLQDNNLTG 198 (550)
Q Consensus 119 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 198 (550)
+|.+..+ +..+. ++|++|++++|.+....+..+..+++|+.|++++|.+......+..+..+ +|+.|+++++.+..
T Consensus 111 ~n~l~~l-~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~ 186 (332)
T 2ft3_A 111 KNHLVEI-PPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG 186 (332)
T ss_dssp SSCCCSC-CSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS
T ss_pred CCcCCcc-Ccccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc
Confidence 6666533 22222 56667777666666444445666666666666666554322222334444 55566666555543
Q ss_pred cCCCCccCCCCCcEEEcccCcccCcchhhccCCCCCcEEEecCccccCCCcccccCCCcccEEEccCCcccCCCCCcccC
Q 008876 199 KIPPTFGYLASLRRVSLANNKLEGAIPTSLGNLQDLTELYLNGNQLSGQIPKSISQLSQLIFLSISRNQIEGPLPSGMFS 278 (550)
Q Consensus 199 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~ 278 (550)
.+..+ .++|++|++++|.+....+..+..+++|++|++++|.+....+..+..+++|+.|++++|.+. .++..+..
T Consensus 187 -l~~~~--~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~ 262 (332)
T 2ft3_A 187 -IPKDL--PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPD 262 (332)
T ss_dssp -CCSSS--CSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGG
T ss_pred -cCccc--cCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhc
Confidence 22211 134555555555544444344444455555555555444333333444444444444444444 33333334
Q ss_pred CCCccEEEccCCcccCCccchhcccCCCCcEEEeecccccccCCccccCC-----CCCccEEEcccccCC--CCchhhhh
Q 008876 279 LQNLQTLDLSFNLLNLSSIPMWMAELPSLSRVYLAGCGIKGKIPEFFRTT-----PSPLQELDLSVNHLS--GSIPAWIG 351 (550)
Q Consensus 279 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~-----~~~L~~L~l~~~~~~--~~~~~~~~ 351 (550)
+++|+.|++ ++|.+.......+... ..+++.+++++|++. ...+..|.
T Consensus 263 l~~L~~L~l-------------------------~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~ 317 (332)
T 2ft3_A 263 LKLLQVVYL-------------------------HTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFR 317 (332)
T ss_dssp CTTCCEEEC-------------------------CSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGT
T ss_pred CccCCEEEC-------------------------CCCCCCccChhHccccccccccccccceEeecCcccccccCccccc
Confidence 444444444 4444433333222221 234777888877765 45566777
Q ss_pred ccccccEEEccCCe
Q 008876 352 SLTQLYSLNLSRNS 365 (550)
Q Consensus 352 ~~~~L~~L~l~~~~ 365 (550)
.+++|+.+++++|+
T Consensus 318 ~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 318 CVTDRLAIQFGNYK 331 (332)
T ss_dssp TBCCSTTEEC----
T ss_pred ccchhhhhhccccc
Confidence 78888888888764
No 47
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.95 E-value=1.5e-26 Score=221.30 Aligned_cols=293 Identities=23% Similarity=0.297 Sum_probs=200.0
Q ss_pred CCCcEEeCCCccCCCCCchhhhhccCCcEEEcCCCcCCCcccccccCCcccchhhccccccCccCchhccCCCCCCEEEc
Q 008876 38 QNLKKLYLYGNKLSGSVPESISKLLKLEELHLHENRLSGTLSSSLGNLKNINQLLMHTNQFTGVIPDSFTNLTNLVRLDL 117 (550)
Q Consensus 38 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 117 (550)
.++++++++++.++ .+|..+. ++|++|++++|.+....+..+..+++|++|++++|.+....|.++..+++|++|++
T Consensus 31 c~l~~l~~~~~~l~-~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (330)
T 1xku_A 31 CHLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL 107 (330)
T ss_dssp EETTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred CCCeEEEecCCCcc-ccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEEC
Confidence 37889999888877 5665553 68999999999888666667888999999999999888777888888999999999
Q ss_pred ccccCccccchhhcCCCCcCeEeccCccccCcCCcccCCCCCCCEEEccCCcccccccCCCCCCCCCCccEEEcCCCccc
Q 008876 118 HCNYLNGYIPEKIGELQLLEQLDFSNNLLRGKLPPSLCNLTVISVLYLDNNKLEGAIPFPSSPGQMPSLGFLRLQDNNLT 197 (550)
Q Consensus 118 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 197 (550)
++|.+... +..+. ++|++|++++|.+....+..+..+++|+.|++++|.+......+..+..+++|++|+++++.+.
T Consensus 108 s~n~l~~l-~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~ 184 (330)
T 1xku_A 108 SKNQLKEL-PEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT 184 (330)
T ss_dssp CSSCCSBC-CSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC
T ss_pred CCCcCCcc-Chhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc
Confidence 98888743 33332 7888888888888766666678888888888888877543333456677778888888777766
Q ss_pred ccCCCCccCCCCCcEEEcccCcccCcchhhccCCCCCcEEEecCccccCCCcccccCCCcccEEEccCCcccCCCCCccc
Q 008876 198 GKIPPTFGYLASLRRVSLANNKLEGAIPTSLGNLQDLTELYLNGNQLSGQIPKSISQLSQLIFLSISRNQIEGPLPSGMF 277 (550)
Q Consensus 198 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~ 277 (550)
. .+..+ .++|++|++++|.+....+..+..+++|++|++++|.+....+..+..+++|+.|++++|.+. .++..+.
T Consensus 185 ~-l~~~~--~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~ 260 (330)
T 1xku_A 185 T-IPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLA 260 (330)
T ss_dssp S-CCSSC--CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTT
T ss_pred c-CCccc--cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhc
Confidence 3 22222 256777777777766555566666677777777777666544445566666666666666665 4455555
Q ss_pred CCCCccEEEccCCcccCCccchhcccCCCCcEEEeecccccccCCccccC-----CCCCccEEEcccccCCC--Cchhhh
Q 008876 278 SLQNLQTLDLSFNLLNLSSIPMWMAELPSLSRVYLAGCGIKGKIPEFFRT-----TPSPLQELDLSVNHLSG--SIPAWI 350 (550)
Q Consensus 278 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-----~~~~L~~L~l~~~~~~~--~~~~~~ 350 (550)
.+++|+.|++++|.++. .....+.. ....++.+++++|++.. ..+..|
T Consensus 261 ~l~~L~~L~l~~N~i~~-------------------------~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f 315 (330)
T 1xku_A 261 DHKYIQVVYLHNNNISA-------------------------IGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTF 315 (330)
T ss_dssp TCSSCCEEECCSSCCCC-------------------------CCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGG
T ss_pred cCCCcCEEECCCCcCCc-------------------------cChhhcCCcccccccccccceEeecCcccccccCcccc
Confidence 56666666666664432 22222211 12347778888877652 445677
Q ss_pred hccccccEEEccCCe
Q 008876 351 GSLTQLYSLNLSRNS 365 (550)
Q Consensus 351 ~~~~~L~~L~l~~~~ 365 (550)
..+++++.+++++|+
T Consensus 316 ~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 316 RCVYVRAAVQLGNYK 330 (330)
T ss_dssp TTCCCGGGEEC----
T ss_pred ccccceeEEEecccC
Confidence 778888888888774
No 48
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.95 E-value=1.2e-26 Score=222.13 Aligned_cols=290 Identities=20% Similarity=0.277 Sum_probs=174.2
Q ss_pred CCcEEEcCCCcCCCcccccccCCcccchhhccccccCccCchhccCCCCCCEEEcccccCccccchhhcCCCCcCeEecc
Q 008876 63 KLEELHLHENRLSGTLSSSLGNLKNINQLLMHTNQFTGVIPDSFTNLTNLVRLDLHCNYLNGYIPEKIGELQLLEQLDFS 142 (550)
Q Consensus 63 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 142 (550)
+++.++++++.+. ..|..+ .++|+.|++++|.+....+.++..+++|++|++++|.+....+.++..+++|++|+++
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 110 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS 110 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCC--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred cCCEEECCCCCcc-ccCCCC--CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence 6778888877766 444443 3567777777777776666667777777777777777776666677777777777777
Q ss_pred CccccCcCCcccCCCCCCCEEEccCCcccccccCCCCCCCCCCccEEEcCCCcccccCCCCccCCCCCcEEEcccCcccC
Q 008876 143 NNLLRGKLPPSLCNLTVISVLYLDNNKLEGAIPFPSSPGQMPSLGFLRLQDNNLTGKIPPTFGYLASLRRVSLANNKLEG 222 (550)
Q Consensus 143 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 222 (550)
+|.+. .+|..+. ++|++|++++|.+..... ..+..+++|++|++++|.+.. ..
T Consensus 111 ~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~--~~~~~l~~L~~L~l~~n~l~~----------------------~~ 163 (332)
T 2ft3_A 111 KNHLV-EIPPNLP--SSLVELRIHDNRIRKVPK--GVFSGLRNMNCIEMGGNPLEN----------------------SG 163 (332)
T ss_dssp SSCCC-SCCSSCC--TTCCEEECCSSCCCCCCS--GGGSSCSSCCEEECCSCCCBG----------------------GG
T ss_pred CCcCC-ccCcccc--ccCCEEECCCCccCccCH--hHhCCCccCCEEECCCCcccc----------------------CC
Confidence 77665 3333332 455555555555442211 224444555555555554431 01
Q ss_pred cchhhccCCCCCcEEEecCccccCCCcccccCCCcccEEEccCCcccCCCCCcccCCCCccEEEccCCcccCCccchhcc
Q 008876 223 AIPTSLGNLQDLTELYLNGNQLSGQIPKSISQLSQLIFLSISRNQIEGPLPSGMFSLQNLQTLDLSFNLLNLSSIPMWMA 302 (550)
Q Consensus 223 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 302 (550)
..+..+..+ +|++|++++|.++. .+..+. ++|+.|++++|.+....+..+..+++|+.|++++|.+... .+..+.
T Consensus 164 ~~~~~~~~l-~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~-~~~~~~ 238 (332)
T 2ft3_A 164 FEPGAFDGL-KLNYLRISEAKLTG-IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMI-ENGSLS 238 (332)
T ss_dssp SCTTSSCSC-CCSCCBCCSSBCSS-CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCC-CTTGGG
T ss_pred CCcccccCC-ccCEEECcCCCCCc-cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcC-ChhHhh
Confidence 222333333 55555555555442 222221 4555555665555544444455556666666666544332 223455
Q ss_pred cCCCCcEEEeecccccccCCccccCCCCCccEEEcccccCCCCchhhhhc------cccccEEEccCCeee--ccCCccc
Q 008876 303 ELPSLSRVYLAGCGIKGKIPEFFRTTPSPLQELDLSVNHLSGSIPAWIGS------LTQLYSLNLSRNSLV--SSIPETI 374 (550)
Q Consensus 303 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~------~~~L~~L~l~~~~~~--~~~~~~l 374 (550)
.+++|+.|++++|.+. ..+..+.... +|+.|++++|+++......|.. .+.++.+++.+|++. ...+..+
T Consensus 239 ~l~~L~~L~L~~N~l~-~lp~~l~~l~-~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~ 316 (332)
T 2ft3_A 239 FLPTLRELHLDNNKLS-RVPAGLPDLK-LLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATF 316 (332)
T ss_dssp GCTTCCEEECCSSCCC-BCCTTGGGCT-TCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGG
T ss_pred CCCCCCEEECCCCcCe-ecChhhhcCc-cCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccc
Confidence 5666666666666655 3333344444 4999999999998776665544 467999999999987 4566778
Q ss_pred cCCCCCcEEEccCCc
Q 008876 375 TNLQDLVLLDLHSNK 389 (550)
Q Consensus 375 ~~~~~L~~L~l~~~~ 389 (550)
..+++|+.+++++|+
T Consensus 317 ~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 317 RCVTDRLAIQFGNYK 331 (332)
T ss_dssp TTBCCSTTEEC----
T ss_pred cccchhhhhhccccc
Confidence 899999999998874
No 49
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.95 E-value=8.5e-28 Score=227.32 Aligned_cols=249 Identities=28% Similarity=0.477 Sum_probs=188.5
Q ss_pred CCCcEEeCCCccCCC--CCchhhhhccCCcEEEcCC-CcCCCcccccccCCcccchhhccccccCccCchhccCCCCCCE
Q 008876 38 QNLKKLYLYGNKLSG--SVPESISKLLKLEELHLHE-NRLSGTLSSSLGNLKNINQLLMHTNQFTGVIPDSFTNLTNLVR 114 (550)
Q Consensus 38 ~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~ 114 (550)
.++++|+++++.+++ .+|..+.++++|++|++++ +.+....|..+.++++|++|++++|.+....|..+..+++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 467777787777776 6777777778888888874 6665566777777778888888877777667777777788888
Q ss_pred EEcccccCccccchhhcCCCCcCeEeccCccccCcCCcccCCCC-CCCEEEccCCcccccccCCCCCCCCCCccEEEcCC
Q 008876 115 LDLHCNYLNGYIPEKIGELQLLEQLDFSNNLLRGKLPPSLCNLT-VISVLYLDNNKLEGAIPFPSSPGQMPSLGFLRLQD 193 (550)
Q Consensus 115 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 193 (550)
|++++|.+....+..+..+++|++|++++|.+.+..|..+..++ +|+.|++++|.+.+..+ ..+..++ |+.|++++
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~--~~~~~l~-L~~L~Ls~ 206 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIP--PTFANLN-LAFVDLSR 206 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECC--GGGGGCC-CSEEECCS
T ss_pred EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCC--hHHhCCc-ccEEECcC
Confidence 88887777766677777778888888887777766677777776 77888888777654332 4455555 88888888
Q ss_pred CcccccCCCCccCCCCCcEEEcccCcccCcchhhccCCCCCcEEEecCccccCCCcccccCCCcccEEEccCCcccCCCC
Q 008876 194 NNLTGKIPPTFGYLASLRRVSLANNKLEGAIPTSLGNLQDLTELYLNGNQLSGQIPKSISQLSQLIFLSISRNQIEGPLP 273 (550)
Q Consensus 194 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 273 (550)
|.+....+..+..+++|+.|++++|.+....+. +..+++|++|++++|.++...+..+..+++|+.|++++|.++..++
T Consensus 207 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip 285 (313)
T 1ogq_A 207 NMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP 285 (313)
T ss_dssp SEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECC
T ss_pred CcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCC
Confidence 877766777778888888888888888755443 6778888888888888876677778888888888888888876666
Q ss_pred CcccCCCCccEEEccCCc
Q 008876 274 SGMFSLQNLQTLDLSFNL 291 (550)
Q Consensus 274 ~~~~~~~~L~~L~l~~~~ 291 (550)
.. ..+++|+.+++++|+
T Consensus 286 ~~-~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 286 QG-GNLQRFDVSAYANNK 302 (313)
T ss_dssp CS-TTGGGSCGGGTCSSS
T ss_pred CC-ccccccChHHhcCCC
Confidence 54 667888888888875
No 50
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.95 E-value=3.4e-26 Score=227.62 Aligned_cols=231 Identities=25% Similarity=0.215 Sum_probs=170.0
Q ss_pred CcEEEeecccccccCCccccCCCCCccEEEcccccCCCCchhhhhccccccEEEccCCeeeccCCccccCCCCCcEEEcc
Q 008876 307 LSRVYLAGCGIKGKIPEFFRTTPSPLQELDLSVNHLSGSIPAWIGSLTQLYSLNLSRNSLVSSIPETITNLQDLVLLDLH 386 (550)
Q Consensus 307 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~ 386 (550)
++.|+++++.+.......+..... |++|++++|.+.......|..+++|+.|++++|.+....+..+..+++|++|+++
T Consensus 66 l~~L~L~~n~i~~~~~~~~~~l~~-L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 144 (440)
T 3zyj_A 66 TRLLNLHENQIQIIKVNSFKHLRH-LEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLR 144 (440)
T ss_dssp CSEEECCSCCCCEECTTTTSSCSS-CCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECC
T ss_pred CcEEEccCCcCCeeCHHHhhCCCC-CCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCC
Confidence 333444444333333333333322 5566666665555555566666777777777776665555566667777777777
Q ss_pred CCccccccccccccCCCCCCCCeEEEeccCCCCCCCCCCCCCCCcccccEEeccCCcccCcCCcccccccccceeeCCCC
Q 008876 387 SNKLTGSISQVFKIGQRFPDGSLTYIDLSDNGFSSGIELTGGGGQTGIRFLNLSRNVLEGQIPVSVGRLRSLRSLDLSYN 466 (550)
Q Consensus 387 ~~~i~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n 466 (550)
+|+++......+... ++|++|++++|.....+....+..+++|++|++++|.++.. + .+..+++|++|++++|
T Consensus 145 ~N~i~~~~~~~~~~l-----~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~Ls~N 217 (440)
T 3zyj_A 145 NNPIESIPSYAFNRI-----PSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREI-P-NLTPLIKLDELDLSGN 217 (440)
T ss_dssp SCCCCEECTTTTTTC-----TTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSC-C-CCTTCSSCCEEECTTS
T ss_pred CCcccccCHHHhhhC-----cccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccc-c-ccCCCcccCEEECCCC
Confidence 777665555444433 66777777776655555555778889999999999999844 3 5788999999999999
Q ss_pred ccceeCCCcCCCCCCCcEEECcCccccccCCCcccCCCcCceeecCCccccccCCCCCC-CCCccccCCCCCCCCCCCCC
Q 008876 467 KLGYVLPGSLANESSLETLKLQNNRFTGRIPSEYLKLKKLKELDLSHNLLVGEIPAGKP-LSDFPESSFSGNRGLCGKPL 545 (550)
Q Consensus 467 ~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~ 545 (550)
.++...+..|.++++|++|++++|.+....+..|.++++|++|++++|.+++..+..+. ++.++++++++|||.|+|++
T Consensus 218 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~l 297 (440)
T 3zyj_A 218 HLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCNCDI 297 (440)
T ss_dssp CCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEECSSTT
T ss_pred ccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccCCCCc
Confidence 99999999999999999999999999988888899999999999999999865555543 78899999999999999986
No 51
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.94 E-value=4.6e-26 Score=227.50 Aligned_cols=208 Identities=25% Similarity=0.199 Sum_probs=156.2
Q ss_pred ccEEEcccccCCCCchhhhhccccccEEEccCCeeeccCCccccCCCCCcEEEccCCccccccccccccCCCCCCCCeEE
Q 008876 332 LQELDLSVNHLSGSIPAWIGSLTQLYSLNLSRNSLVSSIPETITNLQDLVLLDLHSNKLTGSISQVFKIGQRFPDGSLTY 411 (550)
Q Consensus 332 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~L~~ 411 (550)
|+.|++++|.+.......|..+++|+.|++++|.+....+..+..+++|++|++++|+++......+... ++|++
T Consensus 101 L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l-----~~L~~ 175 (452)
T 3zyi_A 101 LEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRV-----PSLMR 175 (452)
T ss_dssp CCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTC-----TTCCE
T ss_pred CCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcC-----CcccE
Confidence 5555555555554444555566666666666666665555556666666666666666655544444332 56666
Q ss_pred EeccCCCCCCCCCCCCCCCcccccEEeccCCcccCcCCcccccccccceeeCCCCccceeCCCcCCCCCCCcEEECcCcc
Q 008876 412 IDLSDNGFSSGIELTGGGGQTGIRFLNLSRNVLEGQIPVSVGRLRSLRSLDLSYNKLGYVLPGSLANESSLETLKLQNNR 491 (550)
Q Consensus 412 L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~ 491 (550)
|++++|...+.+....+..+++|++|++++|.+++. ..+..+++|++|++++|.+++..+..+.++++|++|++++|.
T Consensus 176 L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~ 253 (452)
T 3zyi_A 176 LDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM--PNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQ 253 (452)
T ss_dssp EECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC--CCCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSC
T ss_pred EeCCCCCCccccChhhccCCCCCCEEECCCCccccc--ccccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCc
Confidence 666665555555555677888999999999998854 357889999999999999999989999999999999999999
Q ss_pred ccccCCCcccCCCcCceeecCCccccccCCCCCC-CCCccccCCCCCCCCCCCCCC
Q 008876 492 FTGRIPSEYLKLKKLKELDLSHNLLVGEIPAGKP-LSDFPESSFSGNRGLCGKPLT 546 (550)
Q Consensus 492 ~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~ 546 (550)
+....+..+..+++|+.|++++|.+.+..+..+. +++++++++++|||.|+|++.
T Consensus 254 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~~~ 309 (452)
T 3zyi_A 254 VSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDCDIL 309 (452)
T ss_dssp CCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECSTTTH
T ss_pred CceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCCCCch
Confidence 9988888899999999999999999865555543 788999999999999999863
No 52
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.94 E-value=1.9e-29 Score=261.86 Aligned_cols=399 Identities=13% Similarity=0.059 Sum_probs=222.6
Q ss_pred CCCCCCEEEcccccCccccchhhcC-CCC-cCeEeccCcc-ccC-cCCcccCCCCCCCEEEccCCccccccc--CCCCCC
Q 008876 108 NLTNLVRLDLHCNYLNGYIPEKIGE-LQL-LEQLDFSNNL-LRG-KLPPSLCNLTVISVLYLDNNKLEGAIP--FPSSPG 181 (550)
Q Consensus 108 ~l~~L~~L~l~~~~~~~~~~~~l~~-l~~-L~~L~l~~~~-~~~-~~~~~l~~~~~L~~L~l~~~~~~~~~~--~~~~~~ 181 (550)
.+++|++|+++++.+.+.....+.. ++. |++|++++|. +.. .++.....+++|++|++++|.+.+... +...+.
T Consensus 110 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~ 189 (592)
T 3ogk_B 110 NLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQ 189 (592)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHH
T ss_pred hCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHh
Confidence 5566666666666555443344433 233 6666666554 110 111222355666666666665432210 011223
Q ss_pred CCCCccEEEcCCCccc----ccCCCCccCCCCCcEEEcccCcccCcchhhccCCCCCcEEEecCcccc---CCCcccccC
Q 008876 182 QMPSLGFLRLQDNNLT----GKIPPTFGYLASLRRVSLANNKLEGAIPTSLGNLQDLTELYLNGNQLS---GQIPKSISQ 254 (550)
Q Consensus 182 ~~~~L~~L~l~~~~~~----~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~---~~~~~~l~~ 254 (550)
.+++|++|+++++.+. ...+..+..+++|++|+++++.+.. .+..+..+++|++|+++..... ......+..
T Consensus 190 ~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~ 268 (592)
T 3ogk_B 190 HNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVF 268 (592)
T ss_dssp HCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCC
T ss_pred cCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhc
Confidence 4567777777666654 1222334456777777777776663 4556677778888877643221 123344566
Q ss_pred CCcccEEEccCCcccCCCCCcccCCCCccEEEccCCcccCCccchhcccCCCCcEEEeecccccccCCccccCCCCCccE
Q 008876 255 LSQLIFLSISRNQIEGPLPSGMFSLQNLQTLDLSFNLLNLSSIPMWMAELPSLSRVYLAGCGIKGKIPEFFRTTPSPLQE 334 (550)
Q Consensus 255 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~ 334 (550)
+++|+.+++.++... .++..+..+++|++|++++|.++...+...+..+++|+.|++.+ .+.+.....+....++|++
T Consensus 269 ~~~L~~L~l~~~~~~-~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~-~~~~~~l~~~~~~~~~L~~ 346 (592)
T 3ogk_B 269 PRKLCRLGLSYMGPN-EMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRN-VIGDRGLEVLAQYCKQLKR 346 (592)
T ss_dssp CTTCCEEEETTCCTT-TGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEG-GGHHHHHHHHHHHCTTCCE
T ss_pred cccccccCccccchh-HHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccC-ccCHHHHHHHHHhCCCCCE
Confidence 677777777765332 34445556778888888877654444444566778888888773 3332222222223344777
Q ss_pred EEccc-----------ccCCCC-chhhhhccccccEEEccCCeeeccCCccccC-CCCCcEEEcc----CCcccccccc-
Q 008876 335 LDLSV-----------NHLSGS-IPAWIGSLTQLYSLNLSRNSLVSSIPETITN-LQDLVLLDLH----SNKLTGSISQ- 396 (550)
Q Consensus 335 L~l~~-----------~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~-~~~L~~L~l~----~~~i~~~~~~- 396 (550)
|++++ +.++.. ....+..+++|+.|++..+.+++.....+.. +++|++|+++ .+.++..+..
T Consensus 347 L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~ 426 (592)
T 3ogk_B 347 LRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDN 426 (592)
T ss_dssp EEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHH
T ss_pred EEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHH
Confidence 87773 334322 1223445778888888766666544444443 7778888885 4455432111
Q ss_pred ----ccccCCCCCCCCeEEEeccCCC--CCCCCCCCCCCCcccccEEeccCCcccCcC-CcccccccccceeeCCCCccc
Q 008876 397 ----VFKIGQRFPDGSLTYIDLSDNG--FSSGIELTGGGGQTGIRFLNLSRNVLEGQI-PVSVGRLRSLRSLDLSYNKLG 469 (550)
Q Consensus 397 ----~~~~~~~~~~~~L~~L~l~~~~--~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~-~~~l~~l~~L~~L~l~~n~i~ 469 (550)
.+.. .++|++|++++|. +++.........+++|++|++++|.+++.. +..+.++++|++|+|++|.++
T Consensus 427 ~~~~~~~~-----~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~ 501 (592)
T 3ogk_B 427 GVRSLLIG-----CKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFS 501 (592)
T ss_dssp HHHHHHHH-----CTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCB
T ss_pred HHHHHHHh-----CCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCc
Confidence 1111 1567777776543 332222212234677778888777776432 334466777888888888765
Q ss_pred ee-CCCcCCCCCCCcEEECcCccccccCCCccc-CCCcCceeecCCc
Q 008876 470 YV-LPGSLANESSLETLKLQNNRFTGRIPSEYL-KLKKLKELDLSHN 514 (550)
Q Consensus 470 ~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~-~l~~L~~L~l~~n 514 (550)
+. .+.....+++|++|++++|.++......+. .+|.+....+..+
T Consensus 502 ~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l~~~~p~l~~~~~~~~ 548 (592)
T 3ogk_B 502 ERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPSR 548 (592)
T ss_dssp HHHHHHHHHHCSSCCEEEEESCBCCTTCTTGGGGCCTTEEEEEECCC
T ss_pred HHHHHHHHHhcCccCeeECcCCcCCHHHHHHHHHhCCCcEEEEecCc
Confidence 43 222234567788888888887655443333 4666666655554
No 53
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.94 E-value=2.1e-29 Score=261.69 Aligned_cols=407 Identities=16% Similarity=0.098 Sum_probs=218.0
Q ss_pred CCCCCCEEEcccccCccccchhhc-CCCCcCeEeccCc-cccCc-CCcccCCCCCCCEEEccCCcccccc--cCCCCCCC
Q 008876 108 NLTNLVRLDLHCNYLNGYIPEKIG-ELQLLEQLDFSNN-LLRGK-LPPSLCNLTVISVLYLDNNKLEGAI--PFPSSPGQ 182 (550)
Q Consensus 108 ~l~~L~~L~l~~~~~~~~~~~~l~-~l~~L~~L~l~~~-~~~~~-~~~~l~~~~~L~~L~l~~~~~~~~~--~~~~~~~~ 182 (550)
.+++|++|+++++.+.+..+..+. .+++|++|++.+| .+... ++.....+++|++|++++|.+.+.. .+......
T Consensus 103 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~ 182 (594)
T 2p1m_B 103 SYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDT 182 (594)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTT
T ss_pred hCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhc
Confidence 344555555555544433333332 3455555555544 22211 1222234455555555555432211 11122335
Q ss_pred CCCccEEEcCCCc--ccc-cCCCCccCCCCCcEEEcccCcccCcchhhccCCCCCcEEEecCcc-------ccCCCcccc
Q 008876 183 MPSLGFLRLQDNN--LTG-KIPPTFGYLASLRRVSLANNKLEGAIPTSLGNLQDLTELYLNGNQ-------LSGQIPKSI 252 (550)
Q Consensus 183 ~~~L~~L~l~~~~--~~~-~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~-------~~~~~~~~l 252 (550)
+++|++|+++++. +.. ........+++|++|++++|......+..+..+++|++|++..+. +. .....+
T Consensus 183 ~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~l~~~l 261 (594)
T 2p1m_B 183 YTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYS-GLSVAL 261 (594)
T ss_dssp CCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHH-HHHHHH
T ss_pred CCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHH-HHHHHH
Confidence 5566666666554 110 011112335667777776663222344555666677777654432 11 122245
Q ss_pred cCCCcccEE-EccCCcccCCCCCcccCCCCccEEEccCCcccCCccchhcccCCCCcEEEeecccccccCCccccCCCCC
Q 008876 253 SQLSQLIFL-SISRNQIEGPLPSGMFSLQNLQTLDLSFNLLNLSSIPMWMAELPSLSRVYLAGCGIKGKIPEFFRTTPSP 331 (550)
Q Consensus 253 ~~~~~L~~L-~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 331 (550)
..+++|+.+ .+.+.... .++..+..+++|++|++++|.++...+...+..+++|+.|++.+| +.+.....+....++
T Consensus 262 ~~~~~L~~Ls~~~~~~~~-~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~ 339 (594)
T 2p1m_B 262 SGCKELRCLSGFWDAVPA-YLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKD 339 (594)
T ss_dssp HTCTTCCEEECCBTCCGG-GGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTT
T ss_pred hcCCCcccccCCcccchh-hHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCC
Confidence 666777766 33332211 222222345677777777776444434444566777777777776 332222222222344
Q ss_pred ccEEEccc---------ccCCCCchhhh-hccccccEEEccCCeeeccCCcccc-CCCCCcEEEcc--C----Ccccccc
Q 008876 332 LQELDLSV---------NHLSGSIPAWI-GSLTQLYSLNLSRNSLVSSIPETIT-NLQDLVLLDLH--S----NKLTGSI 394 (550)
Q Consensus 332 L~~L~l~~---------~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~l~-~~~~L~~L~l~--~----~~i~~~~ 394 (550)
|++|++.+ +.+++.....+ ..+++|+.|.+..+.+++.....+. .+++|++|+++ + +.++...
T Consensus 340 L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~ 419 (594)
T 2p1m_B 340 LRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEP 419 (594)
T ss_dssp CCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCC
T ss_pred CCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCc
Confidence 77777733 23332222222 3478888887777776654433443 57888888887 3 3444221
Q ss_pred cc-----ccccCCCCCCCCeEEEeccCCCCCCCCCCCCCCCcccccEEeccCCcccCcCCccc-ccccccceeeCCCCcc
Q 008876 395 SQ-----VFKIGQRFPDGSLTYIDLSDNGFSSGIELTGGGGQTGIRFLNLSRNVLEGQIPVSV-GRLRSLRSLDLSYNKL 468 (550)
Q Consensus 395 ~~-----~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l-~~l~~L~~L~l~~n~i 468 (550)
.. .+... ++|++|++++ .+.+.........+++|+.|++++|.+++.....+ .++++|++|+|++|.+
T Consensus 420 ~~~~~~~l~~~~-----~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~ 493 (594)
T 2p1m_B 420 LDIGFGAIVEHC-----KDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPF 493 (594)
T ss_dssp THHHHHHHHHHC-----TTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSC
T ss_pred hhhHHHHHHhhC-----CCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCC
Confidence 10 11111 5788888866 44332221112237789999999988875555554 6688999999999988
Q ss_pred ceeCCC-cCCCCCCCcEEECcCccccccCCCcc-cCCCcCceeecCCccccccCCCC
Q 008876 469 GYVLPG-SLANESSLETLKLQNNRFTGRIPSEY-LKLKKLKELDLSHNLLVGEIPAG 523 (550)
Q Consensus 469 ~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~-~~l~~L~~L~l~~n~~~~~~~~~ 523 (550)
++.... ....+++|++|++++|+++......+ ..+|+|+...+.++...+..|+.
T Consensus 494 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~~~~~~~~~~~~ 550 (594)
T 2p1m_B 494 GDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDERGAPDSRPES 550 (594)
T ss_dssp CHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTEEEEEECSSSCGGGSCTT
T ss_pred cHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCEEEEecCCCcccccccc
Confidence 654333 33457899999999998865443444 45788887777777655544444
No 54
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.93 E-value=3.6e-25 Score=209.28 Aligned_cols=252 Identities=23% Similarity=0.276 Sum_probs=163.8
Q ss_pred cEEEccCCcccCCCCCcccCCCCccEEEccCCcccCCccch-hcccCCCCcEEEeecccccccCCccccCCCCCccEEEc
Q 008876 259 IFLSISRNQIEGPLPSGMFSLQNLQTLDLSFNLLNLSSIPM-WMAELPSLSRVYLAGCGIKGKIPEFFRTTPSPLQELDL 337 (550)
Q Consensus 259 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l 337 (550)
+.++.+++.++ .++..+. ++|++|++++|.++ .++. .+..+++|+.|++++|.+....
T Consensus 10 ~~l~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~--~i~~~~~~~l~~L~~L~L~~n~l~~~~---------------- 68 (306)
T 2z66_A 10 TEIRCNSKGLT-SVPTGIP--SSATRLELESNKLQ--SLPHGVFDKLTQLTKLSLSSNGLSFKG---------------- 68 (306)
T ss_dssp TEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCC--CCCTTTTTTCTTCSEEECCSSCCCEEE----------------
T ss_pred CEEEcCCCCcc-cCCCCCC--CCCCEEECCCCccC--ccCHhHhhccccCCEEECCCCccCccc----------------
Confidence 34566665555 3343322 46677777666543 2222 2455555555555555443211
Q ss_pred ccccCCCCchhhhhccccccEEEccCCeeeccCCccccCCCCCcEEEccCCccccccc-cccccCCCCCCCCeEEEeccC
Q 008876 338 SVNHLSGSIPAWIGSLTQLYSLNLSRNSLVSSIPETITNLQDLVLLDLHSNKLTGSIS-QVFKIGQRFPDGSLTYIDLSD 416 (550)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~-~~~~~~~~~~~~~L~~L~l~~ 416 (550)
.....+..+++|+.|++++|.+... +..+..+++|++|++++|+++.... ..+... ++|++|++++
T Consensus 69 -------~~~~~~~~~~~L~~L~Ls~n~i~~l-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l-----~~L~~L~l~~ 135 (306)
T 2z66_A 69 -------CCSQSDFGTTSLKYLDLSFNGVITM-SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSL-----RNLIYLDISH 135 (306)
T ss_dssp -------EEEHHHHSCSCCCEEECCSCSEEEE-EEEEETCTTCCEEECTTSEEESSTTTTTTTTC-----TTCCEEECTT
T ss_pred -------CcccccccccccCEEECCCCccccC-hhhcCCCCCCCEEECCCCcccccccchhhhhc-----cCCCEEECCC
Confidence 0122333455555555555555432 2234455566666666665554433 122211 4566666666
Q ss_pred CCCCCCCCCCCCCCcccccEEeccCCcccC-cCCcccccccccceeeCCCCccceeCCCcCCCCCCCcEEECcCcccccc
Q 008876 417 NGFSSGIELTGGGGQTGIRFLNLSRNVLEG-QIPVSVGRLRSLRSLDLSYNKLGYVLPGSLANESSLETLKLQNNRFTGR 495 (550)
Q Consensus 417 ~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~-~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~~~~~ 495 (550)
|.+.+..+ ..+..+++|++|++++|.+++ ..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+...
T Consensus 136 n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 214 (306)
T 2z66_A 136 THTRVAFN-GIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSL 214 (306)
T ss_dssp SCCEECST-TTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBC
T ss_pred CcCCccch-hhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCcc
Confidence 65543222 245677888888888888875 4677888889999999999999888888888889999999999998876
Q ss_pred CCCcccCCCcCceeecCCccccccCCCCCC-C-CCccccCCCCCCCCCCCCC
Q 008876 496 IPSEYLKLKKLKELDLSHNLLVGEIPAGKP-L-SDFPESSFSGNRGLCGKPL 545 (550)
Q Consensus 496 ~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~-~-~~~~~l~~~~~~~~~~~~~ 545 (550)
.+..+..+++|++|++++|.+.+..|.... . .+++++++++||+.|+|++
T Consensus 215 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~ 266 (306)
T 2z66_A 215 DTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEH 266 (306)
T ss_dssp CSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGG
T ss_pred ChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccCh
Confidence 666788889999999999999888876654 3 4788999999999999874
No 55
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.93 E-value=4.9e-29 Score=258.98 Aligned_cols=159 Identities=17% Similarity=0.217 Sum_probs=86.2
Q ss_pred ccccCcccEeeCCCCCCCCcC--CCC------------CccCCCCCcEEeCCCccCCCCCchhhh-hccCCcEEEcCCCc
Q 008876 9 ISLLTSLEVLDLGGLVDLTGI--IPP------------SIGCLQNLKKLYLYGNKLSGSVPESIS-KLLKLEELHLHENR 73 (550)
Q Consensus 9 ~~~~~~L~~L~l~~~~~~~~~--~~~------------~l~~l~~L~~L~l~~~~~~~~~~~~~~-~l~~L~~L~l~~~~ 73 (550)
+..+++|++|++++|..+.+. .|. ....+++|++|+++++.+++..+..+. .+++|++|++++|.
T Consensus 62 ~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~ 141 (594)
T 2p1m_B 62 IRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCE 141 (594)
T ss_dssp HHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCE
T ss_pred HhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcC
Confidence 456777777777775433211 111 123566777777777766655555554 46777777777663
Q ss_pred -CCCc-ccccccCCcccchhhccccccCccCchhc----cCCCCCCEEEccccc--Cccc-cchhhcCCCCcCeEeccCc
Q 008876 74 -LSGT-LSSSLGNLKNINQLLMHTNQFTGVIPDSF----TNLTNLVRLDLHCNY--LNGY-IPEKIGELQLLEQLDFSNN 144 (550)
Q Consensus 74 -~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~l----~~l~~L~~L~l~~~~--~~~~-~~~~l~~l~~L~~L~l~~~ 144 (550)
+... .+..+..+++|++|++++|.+.+..+..+ ..+++|++|+++++. +... ....+..+++|++|++++|
T Consensus 142 ~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~ 221 (594)
T 2p1m_B 142 GFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRA 221 (594)
T ss_dssp EEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTT
T ss_pred CCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCC
Confidence 3311 22333466777777777766554333332 245577777776664 1111 1112234567777777666
Q ss_pred -cccCcCCcccCCCCCCCEEEccCC
Q 008876 145 -LLRGKLPPSLCNLTVISVLYLDNN 168 (550)
Q Consensus 145 -~~~~~~~~~l~~~~~L~~L~l~~~ 168 (550)
.+. .++..+..+++|+.|++..+
T Consensus 222 ~~~~-~l~~~~~~~~~L~~L~l~~~ 245 (594)
T 2p1m_B 222 VPLE-KLATLLQRAPQLEELGTGGY 245 (594)
T ss_dssp SCHH-HHHHHHHHCTTCSEEECSBC
T ss_pred CcHH-HHHHHHhcCCcceEcccccc
Confidence 222 24444555666666665443
No 56
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.93 E-value=6.3e-25 Score=205.26 Aligned_cols=210 Identities=24% Similarity=0.203 Sum_probs=152.9
Q ss_pred CCccEEEcccccCCCCchhhhhccccccEEEccCCeeeccCCccccCCCCCcEEEccCCc-cccccccccccCCCCCCCC
Q 008876 330 SPLQELDLSVNHLSGSIPAWIGSLTQLYSLNLSRNSLVSSIPETITNLQDLVLLDLHSNK-LTGSISQVFKIGQRFPDGS 408 (550)
Q Consensus 330 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~-i~~~~~~~~~~~~~~~~~~ 408 (550)
+++++|+++++.++......+..+++|+.|++++|.+....+..+..+++|++|++++|+ +....+..+... ++
T Consensus 32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l-----~~ 106 (285)
T 1ozn_A 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGL-----GR 106 (285)
T ss_dssp TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTC-----TT
T ss_pred CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCC-----cC
Confidence 346677777776665555566667777777777777766666666677777777777775 655544444433 67
Q ss_pred eEEEeccCCCCCCCCCCCCCCCcccccEEeccCCcccCcCCcccccccccceeeCCCCccceeCCCcCCCCCCCcEEECc
Q 008876 409 LTYIDLSDNGFSSGIELTGGGGQTGIRFLNLSRNVLEGQIPVSVGRLRSLRSLDLSYNKLGYVLPGSLANESSLETLKLQ 488 (550)
Q Consensus 409 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~ 488 (550)
|++|++++|.+.+.. ...+..+++|++|++++|.+++..+..+..+++|++|++++|.++...+..+.++++|++|+++
T Consensus 107 L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 185 (285)
T 1ozn_A 107 LHTLHLDRCGLQELG-PGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLH 185 (285)
T ss_dssp CCEEECTTSCCCCCC-TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCEEECCCCcCCEEC-HhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECC
Confidence 777777777766532 2356777888888888888886666678888888888888888887777778888888888888
Q ss_pred CccccccCCCcccCCCcCceeecCCccccccCCCC-CCCCCccccCCCCCCCCCCCCC
Q 008876 489 NNRFTGRIPSEYLKLKKLKELDLSHNLLVGEIPAG-KPLSDFPESSFSGNRGLCGKPL 545 (550)
Q Consensus 489 ~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~ 545 (550)
+|.+.+..|..+..+++|++|++++|.+.+..+.. ..++.++++++++||+.|+|++
T Consensus 186 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~ 243 (285)
T 1ozn_A 186 QNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRA 243 (285)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGG
T ss_pred CCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCc
Confidence 88888777778888888888888888887644432 3467788888888888888875
No 57
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.92 E-value=3.5e-24 Score=202.53 Aligned_cols=232 Identities=23% Similarity=0.226 Sum_probs=127.7
Q ss_pred CCCcEEeCCCccCCCCCchhhhhccCCcEEEcCCCcCCCcc--cccccCCcccchhhccccccCccCchhccCCCCCCEE
Q 008876 38 QNLKKLYLYGNKLSGSVPESISKLLKLEELHLHENRLSGTL--SSSLGNLKNINQLLMHTNQFTGVIPDSFTNLTNLVRL 115 (550)
Q Consensus 38 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~--~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L 115 (550)
++|++|+++++.++...+..|.++++|++|++++|.+.... +..+..+++|++|++++|.+. ..+..+..+++|++|
T Consensus 28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L 106 (306)
T 2z66_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHL 106 (306)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEE-EEEEEEETCTTCCEE
T ss_pred CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccc-cChhhcCCCCCCCEE
Confidence 45566666666555333333455566666666655544211 233334455555555554444 223334444444444
Q ss_pred EcccccCccccchhhcCCCCcCeEeccCccccCcCCcccCCCCCCCEEEccCCcccccccCCCCCCCCCCccEEEcCCCc
Q 008876 116 DLHCNYLNGYIPEKIGELQLLEQLDFSNNLLRGKLPPSLCNLTVISVLYLDNNKLEGAIPFPSSPGQMPSLGFLRLQDNN 195 (550)
Q Consensus 116 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 195 (550)
++++|.+....+ ...+..+++|++|++++|.+....+ ..+..+++|++|++++|.
T Consensus 107 ~l~~n~l~~~~~-----------------------~~~~~~l~~L~~L~l~~n~l~~~~~--~~~~~l~~L~~L~l~~n~ 161 (306)
T 2z66_A 107 DFQHSNLKQMSE-----------------------FSVFLSLRNLIYLDISHTHTRVAFN--GIFNGLSSLEVLKMAGNS 161 (306)
T ss_dssp ECTTSEEESSTT-----------------------TTTTTTCTTCCEEECTTSCCEECST--TTTTTCTTCCEEECTTCE
T ss_pred ECCCCccccccc-----------------------chhhhhccCCCEEECCCCcCCccch--hhcccCcCCCEEECCCCc
Confidence 444444433222 0234444555555555554432221 344555566666666665
Q ss_pred ccc-cCCCCccCCCCCcEEEcccCcccCcchhhccCCCCCcEEEecCccccCCCcccccCCCcccEEEccCCcccCCCCC
Q 008876 196 LTG-KIPPTFGYLASLRRVSLANNKLEGAIPTSLGNLQDLTELYLNGNQLSGQIPKSISQLSQLIFLSISRNQIEGPLPS 274 (550)
Q Consensus 196 ~~~-~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~ 274 (550)
+.. ..+..+..+++|++|++++|.+....+..+..+++|++|++++|.++......+..+++|+.|++++|.+....+.
T Consensus 162 l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 241 (306)
T 2z66_A 162 FQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQ 241 (306)
T ss_dssp EGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSS
T ss_pred cccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHH
Confidence 543 3455566666666666666666655555666677777777777776655555566677777777777777655555
Q ss_pred cccCCC-CccEEEccCCcccCC
Q 008876 275 GMFSLQ-NLQTLDLSFNLLNLS 295 (550)
Q Consensus 275 ~~~~~~-~L~~L~l~~~~~~~~ 295 (550)
.+..++ +|+.|++++|++...
T Consensus 242 ~~~~~~~~L~~L~L~~N~~~~~ 263 (306)
T 2z66_A 242 ELQHFPSSLAFLNLTQNDFACT 263 (306)
T ss_dssp SCCCCCTTCCEEECTTCCEECS
T ss_pred HHHhhhccCCEEEccCCCeecc
Confidence 666663 777777777766544
No 58
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.92 E-value=7.3e-24 Score=210.80 Aligned_cols=256 Identities=23% Similarity=0.288 Sum_probs=207.2
Q ss_pred CCcEEeCCCccCCCCCchhhhhccCCcEEEcCCCcCCCcccccccCCcccchhhccccccCccCchhccCCCCCCEEEcc
Q 008876 39 NLKKLYLYGNKLSGSVPESISKLLKLEELHLHENRLSGTLSSSLGNLKNINQLLMHTNQFTGVIPDSFTNLTNLVRLDLH 118 (550)
Q Consensus 39 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 118 (550)
..+.++..+..++ .+|..+. ++++.|++++|.+....+..|..+++|++|++++|.+....+.+|.++++|++|+++
T Consensus 44 ~~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~ 120 (440)
T 3zyj_A 44 QFSKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELF 120 (440)
T ss_dssp TSCEEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECC
T ss_pred CCCEEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECC
Confidence 3567777777777 6666554 588888888888876667778888889999998888887777788888899999998
Q ss_pred cccCccccchhhcCCCCcCeEeccCccccCcCCcccCCCCCCCEEEccCCcccccccCCCCCCCCCCccEEEcCCCcccc
Q 008876 119 CNYLNGYIPEKIGELQLLEQLDFSNNLLRGKLPPSLCNLTVISVLYLDNNKLEGAIPFPSSPGQMPSLGFLRLQDNNLTG 198 (550)
Q Consensus 119 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 198 (550)
+|.+..+.+..|..+++|++|++++|.+....+..+..+++|+.|+++++......+ ...+..+++|++|++++|.+..
T Consensus 121 ~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~-~~~~~~l~~L~~L~L~~n~l~~ 199 (440)
T 3zyj_A 121 DNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYIS-EGAFEGLSNLRYLNLAMCNLRE 199 (440)
T ss_dssp SSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEEC-TTTTTTCSSCCEEECTTSCCSS
T ss_pred CCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeC-cchhhcccccCeecCCCCcCcc
Confidence 888887766778888899999998888886666678888899999988865433222 2467888999999999998874
Q ss_pred cCCCCccCCCCCcEEEcccCcccCcchhhccCCCCCcEEEecCccccCCCcccccCCCcccEEEccCCcccCCCCCcccC
Q 008876 199 KIPPTFGYLASLRRVSLANNKLEGAIPTSLGNLQDLTELYLNGNQLSGQIPKSISQLSQLIFLSISRNQIEGPLPSGMFS 278 (550)
Q Consensus 199 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~ 278 (550)
. + .+..+++|++|++++|.+....+..|..+++|++|++++|.++...+..+..+++|+.|++++|+++...+..+..
T Consensus 200 ~-~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 277 (440)
T 3zyj_A 200 I-P-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTP 277 (440)
T ss_dssp C-C-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSS
T ss_pred c-c-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhcc
Confidence 3 3 4788899999999999998777888999999999999999988777778889999999999999998666666778
Q ss_pred CCCccEEEccCCcccCCccchh
Q 008876 279 LQNLQTLDLSFNLLNLSSIPMW 300 (550)
Q Consensus 279 ~~~L~~L~l~~~~~~~~~~~~~ 300 (550)
+++|+.|++++|++..+.-..+
T Consensus 278 l~~L~~L~L~~Np~~CdC~l~~ 299 (440)
T 3zyj_A 278 LHHLERIHLHHNPWNCNCDILW 299 (440)
T ss_dssp CTTCCEEECCSSCEECSSTTHH
T ss_pred ccCCCEEEcCCCCccCCCCchH
Confidence 8999999999998766544443
No 59
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.92 E-value=2.3e-24 Score=204.97 Aligned_cols=223 Identities=22% Similarity=0.300 Sum_probs=141.7
Q ss_pred cCcccEeeCCCCCCCCcCCCCCccCCCCCcEEeCCCccCCCCCchhhhhccCCcEEEcCCCcCCCcccccccCCcccchh
Q 008876 12 LTSLEVLDLGGLVDLTGIIPPSIGCLQNLKKLYLYGNKLSGSVPESISKLLKLEELHLHENRLSGTLSSSLGNLKNINQL 91 (550)
Q Consensus 12 ~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 91 (550)
.+++++|+++++ .+. .+|+.+.++++|++|++++|.++ .+|..+.++++|++|++++|.+. ..|..+..+++|++|
T Consensus 80 ~~~l~~L~L~~n-~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L 155 (328)
T 4fcg_A 80 QPGRVALELRSV-PLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLREL 155 (328)
T ss_dssp STTCCEEEEESS-CCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEE
T ss_pred ccceeEEEccCC-Cch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEE
Confidence 467778888773 343 67777777888888888888777 67777777888888888887776 556677777788888
Q ss_pred hccccccCccCchhccC---------CCCCCEEEcccccCccccchhhcCCCCcCeEeccCccccCcCCcccCCCCCCCE
Q 008876 92 LMHTNQFTGVIPDSFTN---------LTNLVRLDLHCNYLNGYIPEKIGELQLLEQLDFSNNLLRGKLPPSLCNLTVISV 162 (550)
Q Consensus 92 ~l~~~~~~~~~~~~l~~---------l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~ 162 (550)
++++|...+..|..+.. +++|++|++++|.+. ..+..+..+++|++|++++|.+. ..+..+..+++|++
T Consensus 156 ~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~-~l~~~l~~l~~L~~ 233 (328)
T 4fcg_A 156 SIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEE 233 (328)
T ss_dssp EEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC-CCCGGGGGCTTCCE
T ss_pred ECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC-cCchhhccCCCCCE
Confidence 88777666666655433 666666666666665 44555666666666666666665 34445556666666
Q ss_pred EEccCCcccccccCCCCCCCCCCccEEEcCCCcccccCCCCccCCCCCcEEEcccCcccCcchhhccCCCCCcEEEecCc
Q 008876 163 LYLDNNKLEGAIPFPSSPGQMPSLGFLRLQDNNLTGKIPPTFGYLASLRRVSLANNKLEGAIPTSLGNLQDLTELYLNGN 242 (550)
Q Consensus 163 L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 242 (550)
|++++|.+.+..+ ..+..+++|+.|++++|.+....+..+..+++|++|++++|.+.+.+|..++.+++|+.+++..+
T Consensus 234 L~Ls~n~~~~~~p--~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~ 311 (328)
T 4fcg_A 234 LDLRGCTALRNYP--PIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPH 311 (328)
T ss_dssp EECTTCTTCCBCC--CCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGG
T ss_pred EECcCCcchhhhH--HHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHH
Confidence 6666655544322 44555555555555555555445555555555555555555555555555555555555555443
No 60
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.92 E-value=8.2e-24 Score=211.19 Aligned_cols=255 Identities=21% Similarity=0.247 Sum_probs=204.2
Q ss_pred CCcEEeCCCccCCCCCchhhhhccCCcEEEcCCCcCCCcccccccCCcccchhhccccccCccCchhccCCCCCCEEEcc
Q 008876 39 NLKKLYLYGNKLSGSVPESISKLLKLEELHLHENRLSGTLSSSLGNLKNINQLLMHTNQFTGVIPDSFTNLTNLVRLDLH 118 (550)
Q Consensus 39 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 118 (550)
..+.++.++..++ .+|..+. ++|++|++++|.+....+..|..+++|+.|++++|.+....+.+|.++++|++|+++
T Consensus 55 ~~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~ 131 (452)
T 3zyi_A 55 QFSKVVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELF 131 (452)
T ss_dssp SSCEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCcEEEECCCCcC-ccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECC
Confidence 3567777777776 5666554 588888888888876667788888888888888888887777788888889999998
Q ss_pred cccCccccchhhcCCCCcCeEeccCccccCcCCcccCCCCCCCEEEccCCcccccccCCCCCCCCCCccEEEcCCCcccc
Q 008876 119 CNYLNGYIPEKIGELQLLEQLDFSNNLLRGKLPPSLCNLTVISVLYLDNNKLEGAIPFPSSPGQMPSLGFLRLQDNNLTG 198 (550)
Q Consensus 119 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 198 (550)
+|.+..+.+..|..+++|++|++++|.+....+..+..+++|+.|+++++...+..+ ...+..+++|++|++++|.+..
T Consensus 132 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~-~~~~~~l~~L~~L~L~~n~l~~ 210 (452)
T 3zyi_A 132 DNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYIS-EGAFEGLFNLKYLNLGMCNIKD 210 (452)
T ss_dssp SSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEEC-TTTTTTCTTCCEEECTTSCCSS
T ss_pred CCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccC-hhhccCCCCCCEEECCCCcccc
Confidence 888887767778888899999998888876666678888889999888855433322 2467788899999999998874
Q ss_pred cCCCCccCCCCCcEEEcccCcccCcchhhccCCCCCcEEEecCccccCCCcccccCCCcccEEEccCCcccCCCCCcccC
Q 008876 199 KIPPTFGYLASLRRVSLANNKLEGAIPTSLGNLQDLTELYLNGNQLSGQIPKSISQLSQLIFLSISRNQIEGPLPSGMFS 278 (550)
Q Consensus 199 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~ 278 (550)
. ..+..+++|++|++++|.+....+..|..+++|++|++++|.+....+..+..+++|+.|++++|.++......+..
T Consensus 211 ~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 288 (452)
T 3zyi_A 211 M--PNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTP 288 (452)
T ss_dssp C--CCCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTT
T ss_pred c--ccccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhcc
Confidence 3 34778889999999999998777888899999999999999988777777888999999999999988666666777
Q ss_pred CCCccEEEccCCcccCCccch
Q 008876 279 LQNLQTLDLSFNLLNLSSIPM 299 (550)
Q Consensus 279 ~~~L~~L~l~~~~~~~~~~~~ 299 (550)
+++|+.|++++|++..+.-..
T Consensus 289 l~~L~~L~L~~Np~~CdC~~~ 309 (452)
T 3zyi_A 289 LRYLVELHLHHNPWNCDCDIL 309 (452)
T ss_dssp CTTCCEEECCSSCEECSTTTH
T ss_pred ccCCCEEEccCCCcCCCCCch
Confidence 899999999998876554333
No 61
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.92 E-value=9.2e-25 Score=210.81 Aligned_cols=280 Identities=19% Similarity=0.197 Sum_probs=191.4
Q ss_pred ccCCCCCcEEeCCCccCCCCCchhhhhccCCcEEEcCCCcCCCcccccccCCcccchhhccccccCccCchhccCCCCCC
Q 008876 34 IGCLQNLKKLYLYGNKLSGSVPESISKLLKLEELHLHENRLSGTLSSSLGNLKNINQLLMHTNQFTGVIPDSFTNLTNLV 113 (550)
Q Consensus 34 l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~ 113 (550)
-..|+.....+.+++.++ .+|..+. ++|++|++++|.+....+..+..+++|++|++++|.+.+..+.+|..+++|+
T Consensus 27 ~~~C~~~~~c~~~~~~l~-~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 103 (353)
T 2z80_A 27 SLSCDRNGICKGSSGSLN-SIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLE 103 (353)
T ss_dssp CCEECTTSEEECCSTTCS-SCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred CCCCCCCeEeeCCCCCcc-ccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCC
Confidence 345555566777777766 5565443 4777777777777654455677777777777777777766666677777788
Q ss_pred EEEcccccCccccchhhcCCCCcCeEeccCccccCcCC-cccCCCCCCCEEEccCCc-ccccccCCCCCCCCCCccEEEc
Q 008876 114 RLDLHCNYLNGYIPEKIGELQLLEQLDFSNNLLRGKLP-PSLCNLTVISVLYLDNNK-LEGAIPFPSSPGQMPSLGFLRL 191 (550)
Q Consensus 114 ~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~~L~~L~l 191 (550)
+|++++|.+....+..+..+++|++|++++|.+..... ..+..+++|++|++++|. +.... +..+..+++|++|++
T Consensus 104 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~--~~~~~~l~~L~~L~l 181 (353)
T 2z80_A 104 HLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQ--RKDFAGLTFLEELEI 181 (353)
T ss_dssp EEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEEC--TTTTTTCCEEEEEEE
T ss_pred EEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccC--HHHccCCCCCCEEEC
Confidence 88887777776555557777788888888777763333 356777788888887774 33222 245677788888888
Q ss_pred CCCcccccCCCCccCCCCCcEEEcccCcccCcchhhccCCCCCcEEEecCccccCCCcccc---cCCCcccEEEccCCcc
Q 008876 192 QDNNLTGKIPPTFGYLASLRRVSLANNKLEGAIPTSLGNLQDLTELYLNGNQLSGQIPKSI---SQLSQLIFLSISRNQI 268 (550)
Q Consensus 192 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l---~~~~~L~~L~l~~~~~ 268 (550)
++|.+....+..+..+++|++|++++|.+.......+..+++|++|++++|.++......+ ...+.++.+++.++.+
T Consensus 182 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l 261 (353)
T 2z80_A 182 DASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKI 261 (353)
T ss_dssp EETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBC
T ss_pred CCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccc
Confidence 8887776667777888888888888888764444445567888888888887765433322 2346677777777765
Q ss_pred cC----CCCCcccCCCCccEEEccCCcccCCccchh-cccCCCCcEEEeeccccccc
Q 008876 269 EG----PLPSGMFSLQNLQTLDLSFNLLNLSSIPMW-MAELPSLSRVYLAGCGIKGK 320 (550)
Q Consensus 269 ~~----~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~ 320 (550)
.+ .++..+..+++|+.|++++|.++ .++.. +..+++|+.|++++|.+...
T Consensus 262 ~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~--~i~~~~~~~l~~L~~L~L~~N~~~~~ 316 (353)
T 2z80_A 262 TDESLFQVMKLLNQISGLLELEFSRNQLK--SVPDGIFDRLTSLQKIWLHTNPWDCS 316 (353)
T ss_dssp CHHHHHHHHHHHHTCTTCCEEECCSSCCC--CCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred cCcchhhhHHHHhcccCCCEEECCCCCCC--ccCHHHHhcCCCCCEEEeeCCCccCc
Confidence 53 23444566788888888888655 34544 46788888888888876643
No 62
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.92 E-value=2e-24 Score=208.47 Aligned_cols=278 Identities=18% Similarity=0.172 Sum_probs=121.1
Q ss_pred ccCCcEEEcCCCcCCCcccccccCCcccchhhccccccCccCchhccCCCCCCEEEcccccCccccchhhcCCCCcCeEe
Q 008876 61 LLKLEELHLHENRLSGTLSSSLGNLKNINQLLMHTNQFTGVIPDSFTNLTNLVRLDLHCNYLNGYIPEKIGELQLLEQLD 140 (550)
Q Consensus 61 l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ 140 (550)
|+.....+.+++.+. ..|..+. ++|++|+++++.+....+..+..+++|++|++++|.+....+..|..+++|++|+
T Consensus 30 C~~~~~c~~~~~~l~-~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (353)
T 2z80_A 30 CDRNGICKGSSGSLN-SIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLD 106 (353)
T ss_dssp ECTTSEEECCSTTCS-SCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred CCCCeEeeCCCCCcc-ccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEE
Confidence 334444444444444 2233221 3455555555555443333455555555555555555444444455555555555
Q ss_pred ccCccccCcCCcccCCCCCCCEEEccCCcccccccCCCCCCCCCCccEEEcCCC-cccccCCCCccCCCCCcEEEcccCc
Q 008876 141 FSNNLLRGKLPPSLCNLTVISVLYLDNNKLEGAIPFPSSPGQMPSLGFLRLQDN-NLTGKIPPTFGYLASLRRVSLANNK 219 (550)
Q Consensus 141 l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~l~~~~~L~~L~l~~~~ 219 (550)
+++|.+....+..+..+++|++|++++|.+... +....+..+++|++|++++| .+....+..+..+++|++|++++|.
T Consensus 107 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l-~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~ 185 (353)
T 2z80_A 107 LSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTL-GETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASD 185 (353)
T ss_dssp CCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSS-CSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETT
T ss_pred CCCCcCCcCCHhHhCCCccCCEEECCCCCCccc-CchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCC
Confidence 555554433222344455555555555544321 10123444555555555554 2333333444445555555555555
Q ss_pred ccCcchhhccCCCCCcEEEecCccccCCCcccccCCCcccEEEccCCcccCCCCCccc---CCCCccEEEccCCcccCC-
Q 008876 220 LEGAIPTSLGNLQDLTELYLNGNQLSGQIPKSISQLSQLIFLSISRNQIEGPLPSGMF---SLQNLQTLDLSFNLLNLS- 295 (550)
Q Consensus 220 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~---~~~~L~~L~l~~~~~~~~- 295 (550)
+....+..+..+++|++|++++|.+.......+..+++|+.|++++|.+.......+. ..+.++.++++++.+...
T Consensus 186 l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~ 265 (353)
T 2z80_A 186 LQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDES 265 (353)
T ss_dssp CCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHH
T ss_pred cCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcc
Confidence 5444444445555555555555544322222223345555555555544432211111 133444444444433221
Q ss_pred --ccchhcccCCCCcEEEeecccccccCCccccCCCCCccEEEcccccCC
Q 008876 296 --SIPMWMAELPSLSRVYLAGCGIKGKIPEFFRTTPSPLQELDLSVNHLS 343 (550)
Q Consensus 296 --~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 343 (550)
.++..+..+++|+.|++++|.+.......+... ++|++|++++|++.
T Consensus 266 l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l-~~L~~L~L~~N~~~ 314 (353)
T 2z80_A 266 LFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRL-TSLQKIWLHTNPWD 314 (353)
T ss_dssp HHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTC-TTCCEEECCSSCBC
T ss_pred hhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcC-CCCCEEEeeCCCcc
Confidence 123334445555555555554442222112222 22555555555444
No 63
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.92 E-value=1.8e-24 Score=202.13 Aligned_cols=224 Identities=25% Similarity=0.284 Sum_probs=137.6
Q ss_pred cEeeCCCCCCCCcCCCCCccCCCCCcEEeCCCccCCCCCchhhhhccCCcEEEcCCCcCCCcccccccCCcccchhhccc
Q 008876 16 EVLDLGGLVDLTGIIPPSIGCLQNLKKLYLYGNKLSGSVPESISKLLKLEELHLHENRLSGTLSSSLGNLKNINQLLMHT 95 (550)
Q Consensus 16 ~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 95 (550)
++++.++ ..+. .+|..+ .++|++|+++++.++...+..|..+++|++|++++|.+....+..+..+++|++|++++
T Consensus 14 ~~~~c~~-~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 89 (285)
T 1ozn_A 14 VTTSCPQ-QGLQ-AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD 89 (285)
T ss_dssp CEEECCS-SCCS-SCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred eEEEcCc-CCcc-cCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCC
Confidence 4556655 2322 444433 35677777777777655555667777777777777766655566666777777777777
Q ss_pred cc-cCccCchhccCCCCCCEEEcccccCccccchhhcCCCCcCeEeccCccccCcCCcccCCCCCCCEEEccCCcccccc
Q 008876 96 NQ-FTGVIPDSFTNLTNLVRLDLHCNYLNGYIPEKIGELQLLEQLDFSNNLLRGKLPPSLCNLTVISVLYLDNNKLEGAI 174 (550)
Q Consensus 96 ~~-~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 174 (550)
|. +....+..+..+++|++|++++|.+....+..+..+++|++|++++|.+....+..+..+++|++|++++|.+....
T Consensus 90 n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 169 (285)
T 1ozn_A 90 NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVP 169 (285)
T ss_dssp CTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEEC
T ss_pred CCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccC
Confidence 75 55454566666777777777777666555666666777777777776666444444566666666666666554332
Q ss_pred cCCCCCCCCCCccEEEcCCCcccccCCCCccCCCCCcEEEcccCcccCcchhhccCCCCCcEEEecCcccc
Q 008876 175 PFPSSPGQMPSLGFLRLQDNNLTGKIPPTFGYLASLRRVSLANNKLEGAIPTSLGNLQDLTELYLNGNQLS 245 (550)
Q Consensus 175 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 245 (550)
. ..+..+++|+.|++++|.+....+..+..+++|++|++++|.+....+..+..+++|++|++++|++.
T Consensus 170 ~--~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 238 (285)
T 1ozn_A 170 E--RAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV 238 (285)
T ss_dssp T--TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred H--HHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCcc
Confidence 2 33555666666666666665555555555666666666666665544445555666666666665543
No 64
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.91 E-value=6.3e-24 Score=201.93 Aligned_cols=222 Identities=23% Similarity=0.333 Sum_probs=133.7
Q ss_pred CCCCcEEeCCCccCCCCCchhhhhccCCcEEEcCCCcCCCcccccccCCcccchhhccccccCccCchhccCCCCCCEEE
Q 008876 37 LQNLKKLYLYGNKLSGSVPESISKLLKLEELHLHENRLSGTLSSSLGNLKNINQLLMHTNQFTGVIPDSFTNLTNLVRLD 116 (550)
Q Consensus 37 l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ 116 (550)
.+++++|+++++.++ .+|..+.++++|++|++++|.+. ..|..+..+++|++|++++|.+. .+|..+..+++|++|+
T Consensus 80 ~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~ 156 (328)
T 4fcg_A 80 QPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELS 156 (328)
T ss_dssp STTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEE
T ss_pred ccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEE
Confidence 467788888888877 66777777888888888888777 66777777888888888888777 5577777788888888
Q ss_pred cccccCccccchhhcC---------CCCcCeEeccCccccCcCCcccCCCCCCCEEEccCCcccccccCCCCCCCCCCcc
Q 008876 117 LHCNYLNGYIPEKIGE---------LQLLEQLDFSNNLLRGKLPPSLCNLTVISVLYLDNNKLEGAIPFPSSPGQMPSLG 187 (550)
Q Consensus 117 l~~~~~~~~~~~~l~~---------l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~ 187 (550)
+++|......+..+.. +++|++|++++|.+. .+|..+..+++|++|++++|.+.+. +..+..+++|+
T Consensus 157 L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~l---~~~l~~l~~L~ 232 (328)
T 4fcg_A 157 IRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSAL---GPAIHHLPKLE 232 (328)
T ss_dssp EEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCCC---CGGGGGCTTCC
T ss_pred CCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCcC---chhhccCCCCC
Confidence 8776655555554433 666666666666665 4555566666666666666655421 12344455555
Q ss_pred EEEcCCCcccccCCCCccCCCCCcEEEcccCcccCcchhhccCCCCCcEEEecCccccCCCcccccCCCcccEEEccC
Q 008876 188 FLRLQDNNLTGKIPPTFGYLASLRRVSLANNKLEGAIPTSLGNLQDLTELYLNGNQLSGQIPKSISQLSQLIFLSISR 265 (550)
Q Consensus 188 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~ 265 (550)
+|++++|.+....+..+..+++|++|++++|.+....+..+..+++|++|++++|.+....+..+..+++++.+.+..
T Consensus 233 ~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~ 310 (328)
T 4fcg_A 233 ELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPP 310 (328)
T ss_dssp EEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCG
T ss_pred EEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCH
Confidence 555555544444444444444444554444444444444444444444444444444434444444444444444443
No 65
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.90 E-value=7.5e-23 Score=189.29 Aligned_cols=204 Identities=26% Similarity=0.286 Sum_probs=140.7
Q ss_pred ccEEEcccccCCCCchhhhhccccccEEEccCCeeeccCCccccCCCCCcEEEccCCccccccccccccCCCCCCCCeEE
Q 008876 332 LQELDLSVNHLSGSIPAWIGSLTQLYSLNLSRNSLVSSIPETITNLQDLVLLDLHSNKLTGSISQVFKIGQRFPDGSLTY 411 (550)
Q Consensus 332 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~L~~ 411 (550)
.+.++++++.++.. +..+ .++++.|++++|.+....+..+..+++|++|++++|+++......+... ++|++
T Consensus 18 ~~~l~~~~~~l~~i-p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l-----~~L~~ 89 (270)
T 2o6q_A 18 KNSVDCSSKKLTAI-PSNI--PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKEL-----KNLET 89 (270)
T ss_dssp TTEEECTTSCCSSC-CSCC--CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSC-----TTCCE
T ss_pred CCEEEccCCCCCcc-CCCC--CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCC-----CCCCE
Confidence 44555555554422 2111 1345555555555554444455555555555555555554444333322 45666
Q ss_pred EeccCCCCCCCCCCCCCCCcccccEEeccCCcccCcCCcccccccccceeeCCCCccceeCCCcCCCCCCCcEEECcCcc
Q 008876 412 IDLSDNGFSSGIELTGGGGQTGIRFLNLSRNVLEGQIPVSVGRLRSLRSLDLSYNKLGYVLPGSLANESSLETLKLQNNR 491 (550)
Q Consensus 412 L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~ 491 (550)
|++++|.+.. ++...+..+++|++|++++|.+++..+..+..+++|++|++++|.++...+..+..+++|++|++++|.
T Consensus 90 L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~ 168 (270)
T 2o6q_A 90 LWVTDNKLQA-LPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQ 168 (270)
T ss_dssp EECCSSCCCC-CCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EECCCCcCCc-CCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCc
Confidence 6666665543 333356678888888888888887777788889999999999999987777778889999999999999
Q ss_pred ccccCCCcccCCCcCceeecCCccccccCCCCC-CCCCccccCCCCCCCCCCCC
Q 008876 492 FTGRIPSEYLKLKKLKELDLSHNLLVGEIPAGK-PLSDFPESSFSGNRGLCGKP 544 (550)
Q Consensus 492 ~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~ 544 (550)
+....+..+..+++|++|++++|.+.+..+..+ .+++++++++++|||.|+|+
T Consensus 169 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 222 (270)
T 2o6q_A 169 LKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCN 222 (270)
T ss_dssp CSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSSS
T ss_pred CcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCCc
Confidence 887666678889999999999998876444433 37888899999999999997
No 66
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.90 E-value=9.2e-25 Score=207.13 Aligned_cols=262 Identities=20% Similarity=0.187 Sum_probs=165.7
Q ss_pred cEEEcccCcccCcchhhccCCCCCcEEEecCccccCCCcccccCCCcccEEEccCCcccCCCCCcccCCCCccEEEccCC
Q 008876 211 RRVSLANNKLEGAIPTSLGNLQDLTELYLNGNQLSGQIPKSISQLSQLIFLSISRNQIEGPLPSGMFSLQNLQTLDLSFN 290 (550)
Q Consensus 211 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 290 (550)
+..+++.+.+.......+..+++|++|++++|.++...+..+..+++|+.|++++|.+....+ +..+++|+.|++++|
T Consensus 13 ~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n 90 (317)
T 3o53_A 13 KIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNN 90 (317)
T ss_dssp EEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSS
T ss_pred eEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCC
Confidence 334444555543444455566678888888887776666667777788888888777763322 566777777777777
Q ss_pred cccCCccchhcccCCCCcEEEeecccccccCCccccCCCCCccEEEcccccCCCCchhhhhccccccEEEccCCeeeccC
Q 008876 291 LLNLSSIPMWMAELPSLSRVYLAGCGIKGKIPEFFRTTPSPLQELDLSVNHLSGSIPAWIGSLTQLYSLNLSRNSLVSSI 370 (550)
Q Consensus 291 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 370 (550)
.++.. ...++|+.|++++|.+....... .++|++|++++|.++...+..+..+++|+.|++++|.+....
T Consensus 91 ~l~~l------~~~~~L~~L~l~~n~l~~~~~~~----~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 160 (317)
T 3o53_A 91 YVQEL------LVGPSIETLHAANNNISRVSCSR----GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVN 160 (317)
T ss_dssp EEEEE------EECTTCCEEECCSSCCSEEEECC----CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEE
T ss_pred ccccc------cCCCCcCEEECCCCccCCcCccc----cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCccc
Confidence 54321 12355566665555544332221 123555555555554443334444444555555554444333
Q ss_pred Cccc-cCCCCCcEEEccCCccccccccccccCCCCCCCCeEEEeccCCCCCCCCCCCCCCCcccccEEeccCCcccCcCC
Q 008876 371 PETI-TNLQDLVLLDLHSNKLTGSISQVFKIGQRFPDGSLTYIDLSDNGFSSGIELTGGGGQTGIRFLNLSRNVLEGQIP 449 (550)
Q Consensus 371 ~~~l-~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~ 449 (550)
+..+ ..+++ |++|++++|.+.+.. ....+++|++|++++|.+++. +
T Consensus 161 ~~~~~~~l~~-----------------------------L~~L~L~~N~l~~~~---~~~~l~~L~~L~Ls~N~l~~l-~ 207 (317)
T 3o53_A 161 FAELAASSDT-----------------------------LEHLNLQYNFIYDVK---GQVVFAKLKTLDLSSNKLAFM-G 207 (317)
T ss_dssp GGGGGGGTTT-----------------------------CCEEECTTSCCCEEE---CCCCCTTCCEEECCSSCCCEE-C
T ss_pred HHHHhhccCc-----------------------------CCEEECCCCcCcccc---cccccccCCEEECCCCcCCcc-h
Confidence 3222 23444 555555555444321 223477888888888888854 4
Q ss_pred cccccccccceeeCCCCccceeCCCcCCCCCCCcEEECcCcccc-ccCCCcccCCCcCceeecCCccccc
Q 008876 450 VSVGRLRSLRSLDLSYNKLGYVLPGSLANESSLETLKLQNNRFT-GRIPSEYLKLKKLKELDLSHNLLVG 518 (550)
Q Consensus 450 ~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~n~~~~ 518 (550)
..+..+++|++|++++|+++. +|..+..+++|++|++++|++. ...+..+..+++|+.+++++|....
T Consensus 208 ~~~~~l~~L~~L~L~~N~l~~-l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~ 276 (317)
T 3o53_A 208 PEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLT 276 (317)
T ss_dssp GGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred hhhcccCcccEEECcCCcccc-hhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhcc
Confidence 458889999999999999995 5677888999999999999998 6777788899999999999665443
No 67
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.90 E-value=7.4e-23 Score=190.25 Aligned_cols=208 Identities=25% Similarity=0.205 Sum_probs=158.5
Q ss_pred CCccEEEcccccCCCCchhhhhccccccEEEccCCeeeccCCccccCCCCCcEEEccCCccccccccccccCCCCCCCCe
Q 008876 330 SPLQELDLSVNHLSGSIPAWIGSLTQLYSLNLSRNSLVSSIPETITNLQDLVLLDLHSNKLTGSISQVFKIGQRFPDGSL 409 (550)
Q Consensus 330 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~L 409 (550)
+++++|++++|.+++.....+..+++|+.|++++|.+....+..+..+++|++|++++|+++......+... ++|
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l-----~~L 102 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGL-----SSL 102 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTC-----TTC
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCC-----ccc
Confidence 347777777777776655567777788888888887776666677777788888888887776655555433 678
Q ss_pred EEEeccCCCCCCCCCCCCCCCcccccEEeccCCcccCc-CCcccccccccceeeCCCCccceeCCCcCCCCCCCc----E
Q 008876 410 TYIDLSDNGFSSGIELTGGGGQTGIRFLNLSRNVLEGQ-IPVSVGRLRSLRSLDLSYNKLGYVLPGSLANESSLE----T 484 (550)
Q Consensus 410 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~-~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~----~ 484 (550)
++|++++|.+.+... ..+..+++|++|++++|.+++. .+..+..+++|++|++++|++++..+..+..+++|+ +
T Consensus 103 ~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~ 181 (276)
T 2z62_A 103 QKLVAVETNLASLEN-FPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLS 181 (276)
T ss_dssp CEEECTTSCCCCSTT-CCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEE
T ss_pred cEEECCCCCccccCc-hhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhcccccee
Confidence 888888887765333 2477888999999999998864 478889999999999999999888777777777777 8
Q ss_pred EECcCccccccCCCcccCCCcCceeecCCccccccCCCCC-CCCCccccCCCCCCCCCCCC
Q 008876 485 LKLQNNRFTGRIPSEYLKLKKLKELDLSHNLLVGEIPAGK-PLSDFPESSFSGNRGLCGKP 544 (550)
Q Consensus 485 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~ 544 (550)
|++++|.+....+. .....+|++|++++|.+.+..+..+ .+++++++++++||+.|+|+
T Consensus 182 L~ls~n~l~~~~~~-~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 241 (276)
T 2z62_A 182 LDLSLNPMNFIQPG-AFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 241 (276)
T ss_dssp EECCSSCCCEECTT-SSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTT
T ss_pred eecCCCcccccCcc-ccCCCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCC
Confidence 99999999865444 4445589999999999876544443 47889999999999999996
No 68
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.90 E-value=1.2e-22 Score=189.40 Aligned_cols=180 Identities=30% Similarity=0.267 Sum_probs=130.1
Q ss_pred ccEEEcccccCCCCchhhhhccccccEEEccCCeeeccCCccccCCCCCcEEEccCCccccccccccccCCCCCCCCeEE
Q 008876 332 LQELDLSVNHLSGSIPAWIGSLTQLYSLNLSRNSLVSSIPETITNLQDLVLLDLHSNKLTGSISQVFKIGQRFPDGSLTY 411 (550)
Q Consensus 332 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~L~~ 411 (550)
++.|++++|.++......+..+++|+.|++++|.+...... ..++ +|++
T Consensus 33 l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~-----------------------------~L~~ 81 (290)
T 1p9a_G 33 TTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLP-----------------------------VLGT 81 (290)
T ss_dssp CCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCT-----------------------------TCCE
T ss_pred CCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCC-----------------------------cCCE
Confidence 55555555555444444455555555555555554433221 3344 4555
Q ss_pred EeccCCCCCCCCCCCCCCCcccccEEeccCCcccCcCCcccccccccceeeCCCCccceeCCCcCCCCCCCcEEECcCcc
Q 008876 412 IDLSDNGFSSGIELTGGGGQTGIRFLNLSRNVLEGQIPVSVGRLRSLRSLDLSYNKLGYVLPGSLANESSLETLKLQNNR 491 (550)
Q Consensus 412 L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~ 491 (550)
|++++|.+.. ++ ..+..+++|++|++++|.+++..+..|.++++|++|++++|+++...+..|..+++|+.|++++|.
T Consensus 82 L~Ls~N~l~~-l~-~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 159 (290)
T 1p9a_G 82 LDLSHNQLQS-LP-LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNN 159 (290)
T ss_dssp EECCSSCCSS-CC-CCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred EECCCCcCCc-Cc-hhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCc
Confidence 5555554442 22 145677889999999999987777889999999999999999998877788889999999999999
Q ss_pred ccccCCCcccCCCcCceeecCCccccccCCC-CCCCCCccccCCCCCCCCCCCCC
Q 008876 492 FTGRIPSEYLKLKKLKELDLSHNLLVGEIPA-GKPLSDFPESSFSGNRGLCGKPL 545 (550)
Q Consensus 492 ~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~ 545 (550)
+....+..+..+++|+.|++++|.+.. +|. .+...+++++++.||||.|+|++
T Consensus 160 l~~l~~~~~~~l~~L~~L~L~~N~l~~-ip~~~~~~~~L~~l~L~~Np~~C~c~~ 213 (290)
T 1p9a_G 160 LTELPAGLLNGLENLDTLLLQENSLYT-IPKGFFGSHLLPFAFLHGNPWLCNCEI 213 (290)
T ss_dssp CSCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCCCSEEECCSCCBCCSGGG
T ss_pred CCccCHHHhcCcCCCCEEECCCCcCCc-cChhhcccccCCeEEeCCCCccCcCcc
Confidence 996655567889999999999999984 554 45577899999999999999975
No 69
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.90 E-value=8.7e-22 Score=201.21 Aligned_cols=261 Identities=27% Similarity=0.295 Sum_probs=140.2
Q ss_pred CccEEEcCCCcccccCCCCccCCCCCcEEEcccCcccCcchhhccCCCCCcEEEecCccccCCCcccccCCCcccEEEcc
Q 008876 185 SLGFLRLQDNNLTGKIPPTFGYLASLRRVSLANNKLEGAIPTSLGNLQDLTELYLNGNQLSGQIPKSISQLSQLIFLSIS 264 (550)
Q Consensus 185 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~ 264 (550)
+++.|+++++.+. .++..+. ++|++|++++|.+.. ++. .+++|++|++++|.++. ++. .+++|++|+++
T Consensus 41 ~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls 109 (622)
T 3g06_A 41 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLTS-LPV---LPPGLLELSIF 109 (622)
T ss_dssp CCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCSC-CCC---CCTTCCEEEECSCCCSC-CCC---CCTTCCEEEEC
T ss_pred CCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCCC-CCC---cCCCCCEEEcCCCcCCc-CCC---CCCCCCEEECc
Confidence 5778888888777 3444333 678888888877763 332 45677888888777663 222 55777777777
Q ss_pred CCcccCCCCCcccCCCCccEEEccCCcccCCccchhcccCCCCcEEEeecccccccCCccccCCCCCccEEEcccccCCC
Q 008876 265 RNQIEGPLPSGMFSLQNLQTLDLSFNLLNLSSIPMWMAELPSLSRVYLAGCGIKGKIPEFFRTTPSPLQELDLSVNHLSG 344 (550)
Q Consensus 265 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 344 (550)
+|.+.. ++. .+++|+.|++++|.++. ++. .+++|+.|++++|.+.... ..+.+|+.|++++|.++.
T Consensus 110 ~N~l~~-l~~---~l~~L~~L~L~~N~l~~--lp~---~l~~L~~L~Ls~N~l~~l~-----~~~~~L~~L~L~~N~l~~ 175 (622)
T 3g06_A 110 SNPLTH-LPA---LPSGLCKLWIFGNQLTS--LPV---LPPGLQELSVSDNQLASLP-----ALPSELCKLWAYNNQLTS 175 (622)
T ss_dssp SCCCCC-CCC---CCTTCCEEECCSSCCSC--CCC---CCTTCCEEECCSSCCSCCC-----CCCTTCCEEECCSSCCSC
T ss_pred CCcCCC-CCC---CCCCcCEEECCCCCCCc--CCC---CCCCCCEEECcCCcCCCcC-----CccCCCCEEECCCCCCCC
Confidence 777663 332 45667777777765432 222 1355666666655544321 112335555555555543
Q ss_pred CchhhhhccccccEEEccCCeeeccCCccccCCCCCcEEEccCCccccccccccccCCCCCCCCeEEEeccCCCCCCCCC
Q 008876 345 SIPAWIGSLTQLYSLNLSRNSLVSSIPETITNLQDLVLLDLHSNKLTGSISQVFKIGQRFPDGSLTYIDLSDNGFSSGIE 424 (550)
Q Consensus 345 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 424 (550)
.. ..+++|+.|++++|.+..... ..++|+.|++++|.++..+.
T Consensus 176 l~----~~~~~L~~L~Ls~N~l~~l~~----~~~~L~~L~L~~N~l~~l~~----------------------------- 218 (622)
T 3g06_A 176 LP----MLPSGLQELSVSDNQLASLPT----LPSELYKLWAYNNRLTSLPA----------------------------- 218 (622)
T ss_dssp CC----CCCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSSCCC-----------------------------
T ss_pred Cc----ccCCCCcEEECCCCCCCCCCC----ccchhhEEECcCCcccccCC-----------------------------
Confidence 21 233445555555554443211 12344444444444432221
Q ss_pred CCCCCCcccccEEeccCCcccCcCCcccccccccceeeCCCCccceeCCCcCCCCCCCcEEECcCccccccCCCcccCCC
Q 008876 425 LTGGGGQTGIRFLNLSRNVLEGQIPVSVGRLRSLRSLDLSYNKLGYVLPGSLANESSLETLKLQNNRFTGRIPSEYLKLK 504 (550)
Q Consensus 425 ~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~ 504 (550)
.+++|++|++++|.+++. + ..+++|+.|++++|.++. +|. .+++|++|++++|.+. .+|..+.+++
T Consensus 219 -----~~~~L~~L~Ls~N~L~~l-p---~~l~~L~~L~Ls~N~L~~-lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~ 284 (622)
T 3g06_A 219 -----LPSGLKELIVSGNRLTSL-P---VLPSELKELMVSGNRLTS-LPM---LPSGLLSLSVYRNQLT-RLPESLIHLS 284 (622)
T ss_dssp -----CCTTCCEEECCSSCCSCC-C---CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCC-SCCGGGGGSC
T ss_pred -----CCCCCCEEEccCCccCcC-C---CCCCcCcEEECCCCCCCc-CCc---ccccCcEEeCCCCCCC-cCCHHHhhcc
Confidence 234555555555555532 2 234556666666665553 222 3455666666666555 4455555566
Q ss_pred cCceeecCCccccccCC
Q 008876 505 KLKELDLSHNLLVGEIP 521 (550)
Q Consensus 505 ~L~~L~l~~n~~~~~~~ 521 (550)
+|+.|++++|++.+..|
T Consensus 285 ~L~~L~L~~N~l~~~~~ 301 (622)
T 3g06_A 285 SETTVNLEGNPLSERTL 301 (622)
T ss_dssp TTCEEECCSCCCCHHHH
T ss_pred ccCEEEecCCCCCCcCH
Confidence 66666666666554444
No 70
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.89 E-value=3.1e-24 Score=203.55 Aligned_cols=261 Identities=21% Similarity=0.200 Sum_probs=194.8
Q ss_pred CccEEEcCCCcccccCCCCccCCCCCcEEEcccCcccCcchhhccCCCCCcEEEecCccccCCCcccccCCCcccEEEcc
Q 008876 185 SLGFLRLQDNNLTGKIPPTFGYLASLRRVSLANNKLEGAIPTSLGNLQDLTELYLNGNQLSGQIPKSISQLSQLIFLSIS 264 (550)
Q Consensus 185 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~ 264 (550)
.++..+++.+.+.......+..+++|++|++++|.+....+..+..+++|++|++++|.++...+ +..+++|++|+++
T Consensus 11 ~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls 88 (317)
T 3o53_A 11 RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLN 88 (317)
T ss_dssp EEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECC
T ss_pred ceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECc
Confidence 45556777776665444555667899999999999998888889999999999999999874433 8899999999999
Q ss_pred CCcccCCCCCcccCCCCccEEEccCCcccCCccchhcccCCCCcEEEeecccccccCCccccCCCCCccEEEcccccCCC
Q 008876 265 RNQIEGPLPSGMFSLQNLQTLDLSFNLLNLSSIPMWMAELPSLSRVYLAGCGIKGKIPEFFRTTPSPLQELDLSVNHLSG 344 (550)
Q Consensus 265 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 344 (550)
+|.++. +...++|+.|++++|.+.... ...+++|+.|++++|.+....+..+..... |+.|++++|.+.+
T Consensus 89 ~n~l~~-----l~~~~~L~~L~l~~n~l~~~~----~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~-L~~L~Ls~N~l~~ 158 (317)
T 3o53_A 89 NNYVQE-----LLVGPSIETLHAANNNISRVS----CSRGQGKKNIYLANNKITMLRDLDEGCRSR-VQYLDLKLNEIDT 158 (317)
T ss_dssp SSEEEE-----EEECTTCCEEECCSSCCSEEE----ECCCSSCEEEECCSSCCCSGGGBCTGGGSS-EEEEECTTSCCCE
T ss_pred CCcccc-----ccCCCCcCEEECCCCccCCcC----ccccCCCCEEECCCCCCCCccchhhhccCC-CCEEECCCCCCCc
Confidence 999873 224489999999999765432 234789999999999988766656555444 9999999999987
Q ss_pred Cchhhh-hccccccEEEccCCeeeccCCccccCCCCCcEEEccCCccccccccccccCCCCCCCCeEEEeccCCCCCCCC
Q 008876 345 SIPAWI-GSLTQLYSLNLSRNSLVSSIPETITNLQDLVLLDLHSNKLTGSISQVFKIGQRFPDGSLTYIDLSDNGFSSGI 423 (550)
Q Consensus 345 ~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 423 (550)
.....+ ..+++|+.|++++|.+..... ...+++|++|++++|+++..+..
T Consensus 159 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~l~~~--------------------------- 209 (317)
T 3o53_A 159 VNFAELAASSDTLEHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLAFMGPE--------------------------- 209 (317)
T ss_dssp EEGGGGGGGTTTCCEEECTTSCCCEEEC--CCCCTTCCEEECCSSCCCEECGG---------------------------
T ss_pred ccHHHHhhccCcCCEEECCCCcCccccc--ccccccCCEEECCCCcCCcchhh---------------------------
Confidence 665555 478999999999999886532 23578888888888888754332
Q ss_pred CCCCCCCcccccEEeccCCcccCcCCcccccccccceeeCCCCccc-eeCCCcCCCCCCCcEEECcCcc
Q 008876 424 ELTGGGGQTGIRFLNLSRNVLEGQIPVSVGRLRSLRSLDLSYNKLG-YVLPGSLANESSLETLKLQNNR 491 (550)
Q Consensus 424 ~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~i~-~~~~~~l~~l~~L~~L~l~~~~ 491 (550)
+..+++|++|++++|.++ .++..+..+++|+.|++++|++. +..+..+..+++|++|++.++.
T Consensus 210 ----~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~ 273 (317)
T 3o53_A 210 ----FQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVK 273 (317)
T ss_dssp ----GGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred ----hcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCch
Confidence 224455666666666665 34555666777777777777776 4555566666777777777554
No 71
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.89 E-value=3.9e-24 Score=202.33 Aligned_cols=202 Identities=24% Similarity=0.264 Sum_probs=103.8
Q ss_pred CCCCCCEEEcccccCccccchhh--cCCCCcCeEeccCccccCcCCcccCCC-----CCCCEEEccCCcccccccCCCCC
Q 008876 108 NLTNLVRLDLHCNYLNGYIPEKI--GELQLLEQLDFSNNLLRGKLPPSLCNL-----TVISVLYLDNNKLEGAIPFPSSP 180 (550)
Q Consensus 108 ~l~~L~~L~l~~~~~~~~~~~~l--~~l~~L~~L~l~~~~~~~~~~~~l~~~-----~~L~~L~l~~~~~~~~~~~~~~~ 180 (550)
.+++|++|++++|.+.+..+..+ ..+++|++|++++|.+.+. |..+..+ ++|++|++++|.+.+..+ ..+
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~--~~~ 169 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSC--EQV 169 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCT--TTC
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchH--HHh
Confidence 34555555555555443333332 4455555555555554433 3333333 455555555555433221 344
Q ss_pred CCCCCccEEEcCCCccccc--CCC--CccCCCCCcEEEcccCcccCc---chhhccCCCCCcEEEecCccccCCCc-ccc
Q 008876 181 GQMPSLGFLRLQDNNLTGK--IPP--TFGYLASLRRVSLANNKLEGA---IPTSLGNLQDLTELYLNGNQLSGQIP-KSI 252 (550)
Q Consensus 181 ~~~~~L~~L~l~~~~~~~~--~~~--~l~~~~~L~~L~l~~~~~~~~---~~~~l~~~~~L~~L~l~~~~~~~~~~-~~l 252 (550)
..+++|++|++++|.+... .+. .+..+++|++|++++|.+... ....+..+++|++|++++|.+....+ ..+
T Consensus 170 ~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 249 (312)
T 1wwl_A 170 RVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSC 249 (312)
T ss_dssp CCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCC
T ss_pred ccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhh
Confidence 4555555555555543211 111 124555666666666655521 11233455666666666666654332 334
Q ss_pred cCCCcccEEEccCCcccCCCCCcccCCCCccEEEccCCcccCCccchhcccCCCCcEEEeeccccc
Q 008876 253 SQLSQLIFLSISRNQIEGPLPSGMFSLQNLQTLDLSFNLLNLSSIPMWMAELPSLSRVYLAGCGIK 318 (550)
Q Consensus 253 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 318 (550)
..+++|+.|++++|.++ .++..+. ++|+.|++++|.++.. +. +..+++|+.|++++|.+.
T Consensus 250 ~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~--p~-~~~l~~L~~L~L~~N~l~ 309 (312)
T 1wwl_A 250 DWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN--PS-PDELPQVGNLSLKGNPFL 309 (312)
T ss_dssp CCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC--CC-TTTSCEEEEEECTTCTTT
T ss_pred hhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC--hh-HhhCCCCCEEeccCCCCC
Confidence 45566667777766666 4444443 5667777766655433 33 556666777777666654
No 72
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.89 E-value=5.8e-24 Score=201.15 Aligned_cols=250 Identities=22% Similarity=0.282 Sum_probs=137.3
Q ss_pred CCcccEEEccCCcccCCCCCcccCCCCccEEEccCCcccCCccchhcc-------cCCCCcEEEeecccccccCCccc-c
Q 008876 255 LSQLIFLSISRNQIEGPLPSGMFSLQNLQTLDLSFNLLNLSSIPMWMA-------ELPSLSRVYLAGCGIKGKIPEFF-R 326 (550)
Q Consensus 255 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-------~~~~L~~L~l~~~~~~~~~~~~~-~ 326 (550)
.++|+.+++++|.+ .++..+... |+.|+++++.+....++.... .+++|++|++++|.+.+..+..+ .
T Consensus 42 ~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 117 (312)
T 1wwl_A 42 GRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLE 117 (312)
T ss_dssp EEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSS
T ss_pred CCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHH
Confidence 34455555555555 233322221 555666655543333333332 56777777777777765555543 1
Q ss_pred CCCCCccEEEcccccCCCCchhhhhcc-----ccccEEEccCCeeeccCCccccCCCCCcEEEccCCccccccc--cccc
Q 008876 327 TTPSPLQELDLSVNHLSGSIPAWIGSL-----TQLYSLNLSRNSLVSSIPETITNLQDLVLLDLHSNKLTGSIS--QVFK 399 (550)
Q Consensus 327 ~~~~~L~~L~l~~~~~~~~~~~~~~~~-----~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~--~~~~ 399 (550)
...++|++|++++|.+++. +..+..+ ++|++|++++|.+....+..+..+++|++|++++|++..... ..+.
T Consensus 118 ~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~ 196 (312)
T 1wwl_A 118 ATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALC 196 (312)
T ss_dssp CCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSC
T ss_pred hcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHH
Confidence 3344478888888777755 4555555 788888888888877766777788888888888887543211 0110
Q ss_pred cCCCCCCCCeEEEeccCCCCCC--CCCCCCCCCcccccEEeccCCcccCcCC-cccccccccceeeCCCCccceeCCCcC
Q 008876 400 IGQRFPDGSLTYIDLSDNGFSS--GIELTGGGGQTGIRFLNLSRNVLEGQIP-VSVGRLRSLRSLDLSYNKLGYVLPGSL 476 (550)
Q Consensus 400 ~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~~L~~L~l~~~~i~~~~~-~~l~~l~~L~~L~l~~n~i~~~~~~~l 476 (550)
. ...++|++|++++|.+.+ ......+..+++|++|++++|.+++..+ ..+..+++|++|++++|.++ .+|..+
T Consensus 197 ~---~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~ 272 (312)
T 1wwl_A 197 P---LKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGL 272 (312)
T ss_dssp T---TSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSC
T ss_pred h---ccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhc
Confidence 0 011455555555555542 1111122334555555555555554332 33444555556666666555 334444
Q ss_pred CCCCCCcEEECcCccccccCCCcccCCCcCceeecCCcccc
Q 008876 477 ANESSLETLKLQNNRFTGRIPSEYLKLKKLKELDLSHNLLV 517 (550)
Q Consensus 477 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 517 (550)
. ++|++|++++|.+.+. |. +..+++|++|++++|+++
T Consensus 273 ~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~ 309 (312)
T 1wwl_A 273 P--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFL 309 (312)
T ss_dssp C--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTT
T ss_pred c--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCC
Confidence 3 5555666666555533 33 555555666666655554
No 73
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.88 E-value=2e-23 Score=209.37 Aligned_cols=236 Identities=22% Similarity=0.210 Sum_probs=118.6
Q ss_pred CCCcEEEecCccccCCCcccccCCCcccEEEccCCcccCCCCCcccCCCCccEEEccCCcccCCccchhcccCCCCcEEE
Q 008876 232 QDLTELYLNGNQLSGQIPKSISQLSQLIFLSISRNQIEGPLPSGMFSLQNLQTLDLSFNLLNLSSIPMWMAELPSLSRVY 311 (550)
Q Consensus 232 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~ 311 (550)
++|++|++++|.+....+..+..+++|+.|++++|.++...+ +..+++|+.|++++|.++.. ...++
T Consensus 34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l------~~~~~----- 100 (487)
T 3oja_A 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQEL------LVGPS----- 100 (487)
T ss_dssp GGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEE------EECTT-----
T ss_pred CCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCC------CCCCC-----
Confidence 356666666666655444555566666666666665543222 44455555555555543211 11133
Q ss_pred eecccccccCCccccCCCCCccEEEcccccCCCCchhhhhccccccEEEccCCeeeccCCccccCCCCCcEEEccCCccc
Q 008876 312 LAGCGIKGKIPEFFRTTPSPLQELDLSVNHLSGSIPAWIGSLTQLYSLNLSRNSLVSSIPETITNLQDLVLLDLHSNKLT 391 (550)
Q Consensus 312 l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~ 391 (550)
|+.|++++|.+..... ..+++|+.|++++|.+....+..+..+++|++|++++|.++
T Consensus 101 --------------------L~~L~L~~N~l~~~~~---~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 157 (487)
T 3oja_A 101 --------------------IETLHAANNNISRVSC---SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEID 157 (487)
T ss_dssp --------------------CCEEECCSSCCCCEEE---CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCC
T ss_pred --------------------cCEEECcCCcCCCCCc---cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCC
Confidence 5555555555443322 12345555555555555444444455555555555555554
Q ss_pred cccccccccCCCCCCCCeEEEeccCCCCCCCCCCCCCCCcccccEEeccCCcccCcCCcccccccccceeeCCCCcccee
Q 008876 392 GSISQVFKIGQRFPDGSLTYIDLSDNGFSSGIELTGGGGQTGIRFLNLSRNVLEGQIPVSVGRLRSLRSLDLSYNKLGYV 471 (550)
Q Consensus 392 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~i~~~ 471 (550)
...+..+.... +.|++|++++|.+.+.. ....+++|++|++++|.+++.. ..+..+++|+.|++++|.++.
T Consensus 158 ~~~~~~l~~~l----~~L~~L~Ls~N~l~~~~---~~~~l~~L~~L~Ls~N~l~~~~-~~~~~l~~L~~L~Ls~N~l~~- 228 (487)
T 3oja_A 158 TVNFAELAASS----DTLEHLNLQYNFIYDVK---GQVVFAKLKTLDLSSNKLAFMG-PEFQSAAGVTWISLRNNKLVL- 228 (487)
T ss_dssp EEEGGGGGGGT----TTCCEEECTTSCCCEEE---CCCCCTTCCEEECCSSCCCEEC-GGGGGGTTCSEEECTTSCCCE-
T ss_pred CcChHHHhhhC----CcccEEecCCCcccccc---ccccCCCCCEEECCCCCCCCCC-HhHcCCCCccEEEecCCcCcc-
Confidence 43333222100 34444444444433221 1223555666666666665432 235566666666666666664
Q ss_pred CCCcCCCCCCCcEEECcCcccc-ccCCCcccCCCcCceeecC
Q 008876 472 LPGSLANESSLETLKLQNNRFT-GRIPSEYLKLKKLKELDLS 512 (550)
Q Consensus 472 ~~~~l~~l~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~ 512 (550)
+|..+..+++|+.|++++|++. +..|..+..+++|+.+++.
T Consensus 229 lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 229 IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred cchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence 3445555666666666666655 3444445555555555554
No 74
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.88 E-value=2.4e-22 Score=201.51 Aligned_cols=246 Identities=21% Similarity=0.180 Sum_probs=178.2
Q ss_pred CCCccEEEccCCcccCCccchhcccCCCCcEEEeecccccccCCccccCCCCCccEEEcccccCCCCchhhhhccccccE
Q 008876 279 LQNLQTLDLSFNLLNLSSIPMWMAELPSLSRVYLAGCGIKGKIPEFFRTTPSPLQELDLSVNHLSGSIPAWIGSLTQLYS 358 (550)
Q Consensus 279 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 358 (550)
+++|+.|++++|.+... .+..+..+++|+.|++++|.+.+..+ +... ++|+.|++++|.+++. ...++|+.
T Consensus 33 ~~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l-~~L~~L~Ls~N~l~~l-----~~~~~L~~ 103 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQI-SAADLAPFTKLELLNLSSNVLYETLD--LESL-STLRTLDLNNNYVQEL-----LVGPSIET 103 (487)
T ss_dssp GGGCCEEECCSSCCCCC-CGGGGTTCTTCCEEECTTSCCEEEEE--CTTC-TTCCEEECCSSEEEEE-----EECTTCCE
T ss_pred CCCccEEEeeCCcCCCC-CHHHHhCCCCCCEEEeeCCCCCCCcc--cccC-CCCCEEEecCCcCCCC-----CCCCCcCE
Confidence 45889999988876543 34577888888999988888775444 3333 4488888888887633 23478888
Q ss_pred EEccCCeeeccCCccccCCCCCcEEEccCCccccccccccccCCCCCCCCeEEEeccCCCCCCCCCCCCCCCcccccEEe
Q 008876 359 LNLSRNSLVSSIPETITNLQDLVLLDLHSNKLTGSISQVFKIGQRFPDGSLTYIDLSDNGFSSGIELTGGGGQTGIRFLN 438 (550)
Q Consensus 359 L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~ 438 (550)
|++++|.+....+. .+++|++|++++|.++...+..+... ++|++|++++|.+.+..+......+++|++|+
T Consensus 104 L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l-----~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~ 175 (487)
T 3oja_A 104 LHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCR-----SRVQYLDLKLNEIDTVNFAELAASSDTLEHLN 175 (487)
T ss_dssp EECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGG-----SSEEEEECTTSCCCEEEGGGGGGGTTTCCEEE
T ss_pred EECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCC-----CCCCEEECCCCCCCCcChHHHhhhCCcccEEe
Confidence 88888888765443 45778888888888887766555443 68888888888887755443334678888888
Q ss_pred ccCCcccCcCCcccccccccceeeCCCCccceeCCCcCCCCCCCcEEECcCccccccCCCcccCCCcCceeecCCcccc-
Q 008876 439 LSRNVLEGQIPVSVGRLRSLRSLDLSYNKLGYVLPGSLANESSLETLKLQNNRFTGRIPSEYLKLKKLKELDLSHNLLV- 517 (550)
Q Consensus 439 l~~~~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~- 517 (550)
+++|.+++.. .+..+++|+.|++++|.+++..+ .+..+++|+.|++++|.+.+ +|..+..+++|+.|++++|++.
T Consensus 176 Ls~N~l~~~~--~~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c 251 (487)
T 3oja_A 176 LQYNFIYDVK--GQVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHC 251 (487)
T ss_dssp CTTSCCCEEE--CCCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCH
T ss_pred cCCCcccccc--ccccCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcC
Confidence 8888887552 33457888888888888886554 47778888888888888884 6777788888888888888887
Q ss_pred ccCCCC-CCCCCccccCCC-------CCCCCCCCCC
Q 008876 518 GEIPAG-KPLSDFPESSFS-------GNRGLCGKPL 545 (550)
Q Consensus 518 ~~~~~~-~~~~~~~~l~~~-------~~~~~~~~~~ 545 (550)
+.+|.. ..++.+..+.+. ++|+.|.|+-
T Consensus 252 ~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~c~~~~ 287 (487)
T 3oja_A 252 GTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPT 287 (487)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHTSSSSCCCSSTT
T ss_pred cchHHHHHhCCCCcEEeccccccccCCCcccccCCc
Confidence 444432 235556666664 8888888863
No 75
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.88 E-value=2.8e-21 Score=197.49 Aligned_cols=261 Identities=28% Similarity=0.294 Sum_probs=183.9
Q ss_pred CCCCEEEccCCcccccccCCCCCCCCCCccEEEcCCCcccccCCCCccCCCCCcEEEcccCcccCcchhhccCCCCCcEE
Q 008876 158 TVISVLYLDNNKLEGAIPFPSSPGQMPSLGFLRLQDNNLTGKIPPTFGYLASLRRVSLANNKLEGAIPTSLGNLQDLTEL 237 (550)
Q Consensus 158 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L 237 (550)
.+++.|+++++.+... +..+. ++|++|++++|.+.. ++. .+++|++|++++|.+.. ++. .+++|++|
T Consensus 40 ~~l~~L~ls~n~L~~l---p~~l~--~~L~~L~L~~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L 106 (622)
T 3g06_A 40 NGNAVLNVGESGLTTL---PDCLP--AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLTS-LPV---LPPGLLEL 106 (622)
T ss_dssp HCCCEEECCSSCCSCC---CSCCC--TTCSEEEECSCCCSC-CCC---CCTTCCEEEECSCCCSC-CCC---CCTTCCEE
T ss_pred CCCcEEEecCCCcCcc---ChhhC--CCCcEEEecCCCCCC-CCC---cCCCCCEEEcCCCcCCc-CCC---CCCCCCEE
Confidence 3589999999987632 23333 899999999999884 333 57899999999999874 333 67899999
Q ss_pred EecCccccCCCcccccCCCcccEEEccCCcccCCCCCcccCCCCccEEEccCCcccCCccchhcccCCCCcEEEeecccc
Q 008876 238 YLNGNQLSGQIPKSISQLSQLIFLSISRNQIEGPLPSGMFSLQNLQTLDLSFNLLNLSSIPMWMAELPSLSRVYLAGCGI 317 (550)
Q Consensus 238 ~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 317 (550)
++++|.++.. +. .+++|+.|++++|.++. ++.. +++|++|++++|.++. ++. .+++|+.|++.+|.+
T Consensus 107 ~Ls~N~l~~l-~~---~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~--l~~---~~~~L~~L~L~~N~l 173 (622)
T 3g06_A 107 SIFSNPLTHL-PA---LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLAS--LPA---LPSELCKLWAYNNQL 173 (622)
T ss_dssp EECSCCCCCC-CC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC--CCC---CCTTCCEEECCSSCC
T ss_pred ECcCCcCCCC-CC---CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCC--cCC---ccCCCCEEECCCCCC
Confidence 9999998753 32 56899999999999884 4443 4899999999997653 332 457899999999988
Q ss_pred cccCCccccCCCCCccEEEcccccCCCCchhhhhccccccEEEccCCeeeccCCccccCCCCCcEEEccCCccccccccc
Q 008876 318 KGKIPEFFRTTPSPLQELDLSVNHLSGSIPAWIGSLTQLYSLNLSRNSLVSSIPETITNLQDLVLLDLHSNKLTGSISQV 397 (550)
Q Consensus 318 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~ 397 (550)
.... ...++|+.|++++|.++.... .+++|+.|++++|.+..... .+++|++|++++|+++..+ .
T Consensus 174 ~~l~-----~~~~~L~~L~Ls~N~l~~l~~----~~~~L~~L~L~~N~l~~l~~----~~~~L~~L~Ls~N~L~~lp-~- 238 (622)
T 3g06_A 174 TSLP-----MLPSGLQELSVSDNQLASLPT----LPSELYKLWAYNNRLTSLPA----LPSGLKELIVSGNRLTSLP-V- 238 (622)
T ss_dssp SCCC-----CCCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSSCCC----CCTTCCEEECCSSCCSCCC-C-
T ss_pred CCCc-----ccCCCCcEEECCCCCCCCCCC----ccchhhEEECcCCcccccCC----CCCCCCEEEccCCccCcCC-C-
Confidence 7533 344669999999999985322 35799999999999885432 3578999999999887543 1
Q ss_pred cccCCCCCCCCeEEEeccCCCCCCCCCCCCCCCcccccEEeccCCcccCcCCcccccccccceeeCCCCccceeC
Q 008876 398 FKIGQRFPDGSLTYIDLSDNGFSSGIELTGGGGQTGIRFLNLSRNVLEGQIPVSVGRLRSLRSLDLSYNKLGYVL 472 (550)
Q Consensus 398 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~ 472 (550)
..++|+.|++++|.+.. ++. .+++|+.|++++|.++ .+|..+.++++|+.|+|++|++++..
T Consensus 239 -------~l~~L~~L~Ls~N~L~~-lp~----~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~ 300 (622)
T 3g06_A 239 -------LPSELKELMVSGNRLTS-LPM----LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERT 300 (622)
T ss_dssp -------CCTTCCEEECCSSCCSC-CCC----CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHH
T ss_pred -------CCCcCcEEECCCCCCCc-CCc----ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcC
Confidence 01456666666666543 221 3445555555555555 33444555555555555555554433
No 76
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.86 E-value=1.9e-20 Score=173.11 Aligned_cols=200 Identities=26% Similarity=0.320 Sum_probs=96.4
Q ss_pred CcEEeCCCccCCCCCchhhhhccCCcEEEcCCCcCCCcccccccCCcccchhhccccccCccCchhccCCCCCCEEEccc
Q 008876 40 LKKLYLYGNKLSGSVPESISKLLKLEELHLHENRLSGTLSSSLGNLKNINQLLMHTNQFTGVIPDSFTNLTNLVRLDLHC 119 (550)
Q Consensus 40 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~ 119 (550)
.+.++++++.++ .+|..+. ++|++|+++++.+....+..+..+++|++|++++|.+....+..|..+++|++|++++
T Consensus 18 ~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~ 94 (270)
T 2o6q_A 18 KNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTD 94 (270)
T ss_dssp TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCS
T ss_pred CCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCC
Confidence 455555555554 3343332 3455555555555433334455555555555555555544334445555555555555
Q ss_pred ccCccccchhhcCCCCcCeEeccCccccCcCCcccCCCCCCCEEEccCCcccccccCCCCCCCCCCccEEEcCCCccccc
Q 008876 120 NYLNGYIPEKIGELQLLEQLDFSNNLLRGKLPPSLCNLTVISVLYLDNNKLEGAIPFPSSPGQMPSLGFLRLQDNNLTGK 199 (550)
Q Consensus 120 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 199 (550)
|.+....+..+..+++|++|++++|.+....+..+..+++|++|++++|.+..... ..+..+++|++|++++|.+...
T Consensus 95 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~~~l~~L~~L~L~~n~l~~~ 172 (270)
T 2o6q_A 95 NKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPK--GVFDKLTSLKELRLYNNQLKRV 172 (270)
T ss_dssp SCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT--TTTTTCTTCCEEECCSSCCSCC
T ss_pred CcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCH--hHccCCcccceeEecCCcCcEe
Confidence 55554444445555555555555555554433444444555555555444432211 2234444555555554444433
Q ss_pred CCCCccCCCCCcEEEcccCcccCcchhhccCCCCCcEEEecCccc
Q 008876 200 IPPTFGYLASLRRVSLANNKLEGAIPTSLGNLQDLTELYLNGNQL 244 (550)
Q Consensus 200 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 244 (550)
.+..+..+++|++|++++|.+....+..+..+++|+.|++++|++
T Consensus 173 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 217 (270)
T 2o6q_A 173 PEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPW 217 (270)
T ss_dssp CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred ChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCe
Confidence 333344444444444444444433333344444444444444443
No 77
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.86 E-value=6.1e-21 Score=177.29 Aligned_cols=185 Identities=23% Similarity=0.218 Sum_probs=123.9
Q ss_pred ccEEEcccccCCCCchhhhhccccccEEEccCCeeeccCCccccCCCCCcEEEccCCccccccccccccCCCCCCCCeEE
Q 008876 332 LQELDLSVNHLSGSIPAWIGSLTQLYSLNLSRNSLVSSIPETITNLQDLVLLDLHSNKLTGSISQVFKIGQRFPDGSLTY 411 (550)
Q Consensus 332 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~L~~ 411 (550)
|++|++++|.+.......+..+++|+.|++++|.+....+..+..+++|++|++++|++.......+... ++|++
T Consensus 54 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l-----~~L~~ 128 (276)
T 2z62_A 54 LQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHL-----KTLKE 128 (276)
T ss_dssp CSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTC-----TTCCE
T ss_pred CcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccC-----CCCCE
Confidence 4444444444443333445555555666666555555544555555666666666655554443333222 55666
Q ss_pred EeccCCCCCCCCCCCCCCCcccccEEeccCCcccCcCCcccccccccc----eeeCCCCccceeCCCcCCCCCCCcEEEC
Q 008876 412 IDLSDNGFSSGIELTGGGGQTGIRFLNLSRNVLEGQIPVSVGRLRSLR----SLDLSYNKLGYVLPGSLANESSLETLKL 487 (550)
Q Consensus 412 L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~----~L~l~~n~i~~~~~~~l~~l~~L~~L~l 487 (550)
|++++|.+.+......+..+++|++|++++|.+++..+..+..+++|+ +|++++|.++...+..+.. .+|++|++
T Consensus 129 L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~-~~L~~L~L 207 (276)
T 2z62_A 129 LNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE-IRLKELAL 207 (276)
T ss_dssp EECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCS-CCEEEEEC
T ss_pred EECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccCC-CcccEEEC
Confidence 666666655422223566778899999999988877777787777777 8999999999877666654 48999999
Q ss_pred cCccccccCCCcccCCCcCceeecCCccccccCCC
Q 008876 488 QNNRFTGRIPSEYLKLKKLKELDLSHNLLVGEIPA 522 (550)
Q Consensus 488 ~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~ 522 (550)
++|.+....+..+..+++|++|++++|++.+.-|.
T Consensus 208 ~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~ 242 (276)
T 2z62_A 208 DTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 242 (276)
T ss_dssp CSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTTT
T ss_pred CCCceeecCHhHhcccccccEEEccCCcccccCCc
Confidence 99999866655678899999999999999876553
No 78
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.85 E-value=3.5e-20 Score=171.43 Aligned_cols=183 Identities=24% Similarity=0.240 Sum_probs=93.1
Q ss_pred ccccccEEEccCCeeeccCCccccCCCCCcEEEccCCccccccccccccCCCCCCCCeEEEeccCCCCCCCCCCCCCCCc
Q 008876 352 SLTQLYSLNLSRNSLVSSIPETITNLQDLVLLDLHSNKLTGSISQVFKIGQRFPDGSLTYIDLSDNGFSSGIELTGGGGQ 431 (550)
Q Consensus 352 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 431 (550)
.+++|+.+++.+|.+... ..+..+++|++|++++|.++... .+... ++|++|++++|.+.+ +....+..+
T Consensus 39 ~l~~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~l~~~~--~l~~l-----~~L~~L~L~~n~l~~-~~~~~~~~l 108 (272)
T 3rfs_A 39 ELNSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLHDIS--ALKEL-----TNLTYLILTGNQLQS-LPNGVFDKL 108 (272)
T ss_dssp HHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECTTSCCCCCG--GGTTC-----TTCCEEECTTSCCCC-CCTTTTTTC
T ss_pred cccceeeeeeCCCCcccc--cccccCCCCcEEECCCCCCCCch--hhcCC-----CCCCEEECCCCccCc-cChhHhcCC
Confidence 344445555554444322 12344445555555555444321 11111 445555555554443 222234455
Q ss_pred ccccEEeccCCcccCcCCcccccccccceeeCCCCccceeCCCcCCCCCCCcEEECcCccccccCCCcccCCCcCceeec
Q 008876 432 TGIRFLNLSRNVLEGQIPVSVGRLRSLRSLDLSYNKLGYVLPGSLANESSLETLKLQNNRFTGRIPSEYLKLKKLKELDL 511 (550)
Q Consensus 432 ~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 511 (550)
++|++|++++|.+++..+..+..+++|++|++++|.++...+..+.++++|++|++++|.+++..+..+..+++|++|++
T Consensus 109 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L 188 (272)
T 3rfs_A 109 TNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRL 188 (272)
T ss_dssp TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred cCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEEC
Confidence 55666666666555554545555566666666666655555445555566666666666655444444555666666666
Q ss_pred CCccccccCCCC-CCCCCccccCCCCCCCCCCCC
Q 008876 512 SHNLLVGEIPAG-KPLSDFPESSFSGNRGLCGKP 544 (550)
Q Consensus 512 ~~n~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~ 544 (550)
++|.+.+..|.. ..+++++++++++||+.|.|+
T Consensus 189 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 222 (272)
T 3rfs_A 189 YQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 222 (272)
T ss_dssp CSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred CCCcCCccCHHHHhCCcCCCEEEccCCCccccCc
Confidence 666655544433 235555666666666666554
No 79
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.84 E-value=1.7e-20 Score=170.22 Aligned_cols=199 Identities=16% Similarity=0.157 Sum_probs=159.1
Q ss_pred CCccEEEcccccCCCCchhhhhccccccEEEccCCe-eeccCCccccCCCCCcEEEccC-CccccccccccccCCCCCCC
Q 008876 330 SPLQELDLSVNHLSGSIPAWIGSLTQLYSLNLSRNS-LVSSIPETITNLQDLVLLDLHS-NKLTGSISQVFKIGQRFPDG 407 (550)
Q Consensus 330 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~l~~~~~L~~L~l~~-~~i~~~~~~~~~~~~~~~~~ 407 (550)
.+++.|++++|.++......|..+++|+.|++++|. +....+..+..+++|++|++++ |+++..+...+... +
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l-----~ 105 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKEL-----P 105 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECC-----T
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCC-----C
Confidence 358888888888876666677788888888888886 7766666778888888888887 88877666655543 6
Q ss_pred CeEEEeccCCCCCCCCCCCCCCCccccc---EEeccCC-cccCcCCcccccccccc-eeeCCCCccceeCCCcCCCCCCC
Q 008876 408 SLTYIDLSDNGFSSGIELTGGGGQTGIR---FLNLSRN-VLEGQIPVSVGRLRSLR-SLDLSYNKLGYVLPGSLANESSL 482 (550)
Q Consensus 408 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~---~L~l~~~-~i~~~~~~~l~~l~~L~-~L~l~~n~i~~~~~~~l~~l~~L 482 (550)
+|++|++++|.+.+ ++ .+..+++|+ +|++++| .+++..+..|.++++|+ +|++++|.++.+.+..+.. ++|
T Consensus 106 ~L~~L~l~~n~l~~-lp--~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L 181 (239)
T 2xwt_C 106 LLKFLGIFNTGLKM-FP--DLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKL 181 (239)
T ss_dssp TCCEEEEEEECCCS-CC--CCTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEE
T ss_pred CCCEEeCCCCCCcc-cc--ccccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCC
Confidence 88888888888776 33 266777777 9999999 88877777899999999 9999999999776666666 899
Q ss_pred cEEECcCcc-ccccCCCcccCC-CcCceeecCCccccccCCCCCCCCCccccCCCCCCC
Q 008876 483 ETLKLQNNR-FTGRIPSEYLKL-KKLKELDLSHNLLVGEIPAGKPLSDFPESSFSGNRG 539 (550)
Q Consensus 483 ~~L~l~~~~-~~~~~~~~~~~l-~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~~~~~~ 539 (550)
++|++++|+ +....+..|..+ ++|+.|++++|.+. .+|.. .+..+++|++.+++.
T Consensus 182 ~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~-~l~~~-~~~~L~~L~l~~~~~ 238 (239)
T 2xwt_C 182 DAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT-ALPSK-GLEHLKELIARNTWT 238 (239)
T ss_dssp EEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCC-CCCCT-TCTTCSEEECTTC--
T ss_pred CEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccc-cCChh-HhccCceeeccCccC
Confidence 999999995 886666778889 99999999999997 46666 778899999988753
No 80
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.84 E-value=3.3e-20 Score=171.60 Aligned_cols=210 Identities=25% Similarity=0.267 Sum_probs=148.4
Q ss_pred ccCCCCCcEEeCCCccCCCCCchhhhhccCCcEEEcCCCcCCCcccccccCCcccchhhccccccCccCchhccCCCCCC
Q 008876 34 IGCLQNLKKLYLYGNKLSGSVPESISKLLKLEELHLHENRLSGTLSSSLGNLKNINQLLMHTNQFTGVIPDSFTNLTNLV 113 (550)
Q Consensus 34 l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~ 113 (550)
...+++|++|+++++.++. . ..+..+++|++|++++|.+.. ...+..+++|++|++++|.+....+..+..+++|+
T Consensus 37 ~~~l~~L~~L~l~~~~i~~-~-~~l~~l~~L~~L~l~~n~l~~--~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 112 (272)
T 3rfs_A 37 QNELNSIDQIIANNSDIKS-V-QGIQYLPNVRYLALGGNKLHD--ISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLK 112 (272)
T ss_dssp HHHHTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECTTSCCCC--CGGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred cccccceeeeeeCCCCccc-c-cccccCCCCcEEECCCCCCCC--chhhcCCCCCCEEECCCCccCccChhHhcCCcCCC
Confidence 5567777777777777652 2 346677777777777777653 23567777777777777777766666677777888
Q ss_pred EEEcccccCccccchhhcCCCCcCeEeccCccccCcCCcccCCCCCCCEEEccCCcccccccCCCCCCCCCCccEEEcCC
Q 008876 114 RLDLHCNYLNGYIPEKIGELQLLEQLDFSNNLLRGKLPPSLCNLTVISVLYLDNNKLEGAIPFPSSPGQMPSLGFLRLQD 193 (550)
Q Consensus 114 ~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 193 (550)
+|++++|.+....+..+..+++|++|++++|.+....+..+..+++|+.|++++|.+.+..+ ..+..+++|+.|++++
T Consensus 113 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~~~l~~L~~L~L~~ 190 (272)
T 3rfs_A 113 ELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPE--GVFDKLTQLKDLRLYQ 190 (272)
T ss_dssp EEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT--TTTTTCTTCCEEECCS
T ss_pred EEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCH--HHhcCCccCCEEECCC
Confidence 88887777776666667777788888888777775555556777788888888877664332 4466778888888888
Q ss_pred CcccccCCCCccCCCCCcEEEcccCcccCcchhhccCCCCCcEEEecCccccCCCcccccCCC
Q 008876 194 NNLTGKIPPTFGYLASLRRVSLANNKLEGAIPTSLGNLQDLTELYLNGNQLSGQIPKSISQLS 256 (550)
Q Consensus 194 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~ 256 (550)
|.+....+..+..+++|+.|++++|.+. +.+++|+.+++..+.+....+..++.++
T Consensus 191 N~l~~~~~~~~~~l~~L~~L~l~~N~~~-------~~~~~l~~l~~~~n~~~g~ip~~~~~~~ 246 (272)
T 3rfs_A 191 NQLKSVPDGVFDRLTSLQYIWLHDNPWD-------CTCPGIRYLSEWINKHSGVVRNSAGSVA 246 (272)
T ss_dssp SCCSCCCTTTTTTCTTCCEEECCSSCBC-------CCTTTTHHHHHHHHHTGGGBBCTTSCBC
T ss_pred CcCCccCHHHHhCCcCCCEEEccCCCcc-------ccCcHHHHHHHHHHhCCCcccCcccccC
Confidence 8777666666777888888888887664 3456777777777777655555555443
No 81
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.83 E-value=8.5e-20 Score=166.75 Aligned_cols=178 Identities=25% Similarity=0.280 Sum_probs=98.4
Q ss_pred ccEEEcccccCCCCchhhhhccccccEEEccCCeeeccCCccccCCCCCcEEEccCCccccccccccccCCCCCCCCeEE
Q 008876 332 LQELDLSVNHLSGSIPAWIGSLTQLYSLNLSRNSLVSSIPETITNLQDLVLLDLHSNKLTGSISQVFKIGQRFPDGSLTY 411 (550)
Q Consensus 332 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~L~~ 411 (550)
.+.++++++.++.. +..+. ++++.|++++|.+....+..+..+++|++|++++|.++......+... ++|++
T Consensus 16 ~~~l~~~~~~l~~~-p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l-----~~L~~ 87 (251)
T 3m19_A 16 KKEVDCQGKSLDSV-PSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDL-----TELGT 87 (251)
T ss_dssp GTEEECTTCCCSSC-CSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTC-----TTCCE
T ss_pred CeEEecCCCCcccc-CCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccC-----CcCCE
Confidence 56677777776633 22222 567777777777776666667777777777777777765544433322 45555
Q ss_pred EeccCCCCCCCCCCCCCCCcccccEEeccCCcccCcCCcccccccccceeeCCCCccceeCCCcCCCCCCCcEEECcCcc
Q 008876 412 IDLSDNGFSSGIELTGGGGQTGIRFLNLSRNVLEGQIPVSVGRLRSLRSLDLSYNKLGYVLPGSLANESSLETLKLQNNR 491 (550)
Q Consensus 412 L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~ 491 (550)
|++++|.+.+ ++...+..+++|++|++++|.+++..+..+..+++|++|++++|.++.+.+..+..+++|++|++++|.
T Consensus 88 L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~ 166 (251)
T 3m19_A 88 LGLANNQLAS-LPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQ 166 (251)
T ss_dssp EECTTSCCCC-CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EECCCCcccc-cChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCc
Confidence 5555555543 222234455555555555555554444444555555555555555554444445555555555555555
Q ss_pred ccccCCCcccCCCcCceeecCCccccc
Q 008876 492 FTGRIPSEYLKLKKLKELDLSHNLLVG 518 (550)
Q Consensus 492 ~~~~~~~~~~~l~~L~~L~l~~n~~~~ 518 (550)
+....+..+..+++|+.|++++|++.+
T Consensus 167 l~~~~~~~~~~l~~L~~L~l~~N~~~c 193 (251)
T 3m19_A 167 LQSVPHGAFDRLGKLQTITLFGNQFDC 193 (251)
T ss_dssp CSCCCTTTTTTCTTCCEEECCSCCBCT
T ss_pred CCccCHHHHhCCCCCCEEEeeCCceeC
Confidence 554444444555555555555555544
No 82
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.83 E-value=2.1e-19 Score=167.37 Aligned_cols=153 Identities=24% Similarity=0.254 Sum_probs=76.2
Q ss_pred ccccCcccEeeCCCCCCCCcCCCCCccCCCCCcEEeCCCccCCCCCchhhhhccCCcEEEcCCCcCCCcccccccCCccc
Q 008876 9 ISLLTSLEVLDLGGLVDLTGIIPPSIGCLQNLKKLYLYGNKLSGSVPESISKLLKLEELHLHENRLSGTLSSSLGNLKNI 88 (550)
Q Consensus 9 ~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L 88 (550)
++++++++.+++++ ..+. .+|..+. +++++|+++++.++...+..|..+++|++|++++|.+... +. ...+++|
T Consensus 6 ~~~l~~l~~l~~~~-~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~-~~~l~~L 79 (290)
T 1p9a_G 6 VSKVASHLEVNCDK-RNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL-QV-DGTLPVL 79 (290)
T ss_dssp EECSTTCCEEECTT-SCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEE-EC-CSCCTTC
T ss_pred ccccCCccEEECCC-CCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcc-cC-CCCCCcC
Confidence 45566666666665 2332 4444432 4566666666666544555566666666666666655422 21 1445555
Q ss_pred chhhccccccCccCchhccCCCCCCEEEcccccCccccchhhcCCCCcCeEeccCccccCcCCcccCCCCCCCEEEccCC
Q 008876 89 NQLLMHTNQFTGVIPDSFTNLTNLVRLDLHCNYLNGYIPEKIGELQLLEQLDFSNNLLRGKLPPSLCNLTVISVLYLDNN 168 (550)
Q Consensus 89 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 168 (550)
++|++++|.+. .+|..+..+++|++|++++|.++...+..|..+++|++|++++|++....+..+..+++|+.|++++|
T Consensus 80 ~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 158 (290)
T 1p9a_G 80 GTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN 158 (290)
T ss_dssp CEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred CEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCC
Confidence 55555555554 33444445555555555555554444444444555555555544444332233333333333333333
No 83
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.82 E-value=3.5e-21 Score=186.13 Aligned_cols=263 Identities=17% Similarity=0.124 Sum_probs=129.1
Q ss_pred EEecCccccCCCcccccCCCcccEEEccCCcccCCCC----CcccCCC-CccEEEccCCcccCCccc---hhcccC-CCC
Q 008876 237 LYLNGNQLSGQIPKSISQLSQLIFLSISRNQIEGPLP----SGMFSLQ-NLQTLDLSFNLLNLSSIP---MWMAEL-PSL 307 (550)
Q Consensus 237 L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~----~~~~~~~-~L~~L~l~~~~~~~~~~~---~~~~~~-~~L 307 (550)
+.++.+.++...+..+...++|+.|++++|.+.+..+ ..+..++ +|++|++++|.++..... ..+... ++|
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L 82 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV 82 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence 3455555554444444444556777777766664333 3344455 666666666655433211 111111 555
Q ss_pred cEEEeecccccccCCcc----ccCCCCCccEEEcccccCCCCchhhhhccccccEEEccCCeeeccCCccccC-CCCCcE
Q 008876 308 SRVYLAGCGIKGKIPEF----FRTTPSPLQELDLSVNHLSGSIPAWIGSLTQLYSLNLSRNSLVSSIPETITN-LQDLVL 382 (550)
Q Consensus 308 ~~L~l~~~~~~~~~~~~----~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~-~~~L~~ 382 (550)
++|++++|.+.+..... +...+++|++|++++|.+++.....+.. .+.. .++|++
T Consensus 83 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~--------------------~l~~~~~~L~~ 142 (362)
T 3goz_A 83 TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQ--------------------AFSNLPASITS 142 (362)
T ss_dssp CEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHH--------------------HHTTSCTTCCE
T ss_pred cEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHH--------------------HHHhCCCceeE
Confidence 55555555544333221 1111123455555554444333222211 1111 234555
Q ss_pred EEccCCccccccccccccCCCCCCCCeEEEeccCCCCCCCCCC---CCCCCc-ccccEEeccCCcccCc----CCccccc
Q 008876 383 LDLHSNKLTGSISQVFKIGQRFPDGSLTYIDLSDNGFSSGIEL---TGGGGQ-TGIRFLNLSRNVLEGQ----IPVSVGR 454 (550)
Q Consensus 383 L~l~~~~i~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~---~~~~~~-~~L~~L~l~~~~i~~~----~~~~l~~ 454 (550)
|++++|+++..+...+........++|++|++++|.+.+.... ..+..+ ++|++|++++|.+++. ++..+..
T Consensus 143 L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~ 222 (362)
T 3goz_A 143 LNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSS 222 (362)
T ss_dssp EECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHH
T ss_pred EEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhc
Confidence 5555554443333222111100112455555555544332211 011223 4677777777776643 2334444
Q ss_pred -ccccceeeCCCCccceeCC----CcCCCCCCCcEEECcCccccc-------cCCCcccCCCcCceeecCCcccccc
Q 008876 455 -LRSLRSLDLSYNKLGYVLP----GSLANESSLETLKLQNNRFTG-------RIPSEYLKLKKLKELDLSHNLLVGE 519 (550)
Q Consensus 455 -l~~L~~L~l~~n~i~~~~~----~~l~~l~~L~~L~l~~~~~~~-------~~~~~~~~l~~L~~L~l~~n~~~~~ 519 (550)
.++|++|++++|.+++..+ ..+..+++|++|++++|.+.. .++..+..+++|+.|++++|++.+.
T Consensus 223 ~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 223 IPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp SCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred CCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence 3478888888887775433 334566778888888877332 2233455677788888888877655
No 84
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.82 E-value=4.8e-21 Score=185.15 Aligned_cols=258 Identities=16% Similarity=0.134 Sum_probs=129.3
Q ss_pred EcccCcccCcchhhccCCCCCcEEEecCccccCCCc----ccccCCC-cccEEEccCCcccCCCCCcccCC-----CCcc
Q 008876 214 SLANNKLEGAIPTSLGNLQDLTELYLNGNQLSGQIP----KSISQLS-QLIFLSISRNQIEGPLPSGMFSL-----QNLQ 283 (550)
Q Consensus 214 ~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~----~~l~~~~-~L~~L~l~~~~~~~~~~~~~~~~-----~~L~ 283 (550)
.++.+.+.+..+..+...++|++|++++|.+++... ..+..++ +|++|++++|.+.+..+..+... ++|+
T Consensus 4 ~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~ 83 (362)
T 3goz_A 4 KLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVT 83 (362)
T ss_dssp ECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCC
T ss_pred ccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCcc
Confidence 444444444444444444445555555555554433 4444555 56666666655554333333322 5666
Q ss_pred EEEccCCcccCCcc---chhcccC-CCCcEEEeecccccccCCcccc----CCCCCccEEEcccccCCCCchh----hhh
Q 008876 284 TLDLSFNLLNLSSI---PMWMAEL-PSLSRVYLAGCGIKGKIPEFFR----TTPSPLQELDLSVNHLSGSIPA----WIG 351 (550)
Q Consensus 284 ~L~l~~~~~~~~~~---~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~----~~~~~L~~L~l~~~~~~~~~~~----~~~ 351 (550)
+|++++|.++.... ...+..+ ++|+.|++++|.+.......+. ..+.+|++|++++|.+++.... .+.
T Consensus 84 ~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~ 163 (362)
T 3goz_A 84 SLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILA 163 (362)
T ss_dssp EEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHH
T ss_pred EEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHh
Confidence 66666665443321 1123333 5666666666665544433222 1133477777777776644332 233
Q ss_pred ccc-cccEEEccCCeeeccCCc----cccCC-CCCcEEEccCCccccccccccccCCCCCCCCeEEEeccCCCCCCCCC-
Q 008876 352 SLT-QLYSLNLSRNSLVSSIPE----TITNL-QDLVLLDLHSNKLTGSISQVFKIGQRFPDGSLTYIDLSDNGFSSGIE- 424 (550)
Q Consensus 352 ~~~-~L~~L~l~~~~~~~~~~~----~l~~~-~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~- 424 (550)
..+ +|+.|++++|.+.+..+. .+..+ ++|++|++++|.++..+...+........++|++|++++|.+.+...
T Consensus 164 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~ 243 (362)
T 3goz_A 164 AIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLE 243 (362)
T ss_dssp TSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHH
T ss_pred cCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHH
Confidence 344 777777777777655443 23344 47777777777776644432222111001355666666555544221
Q ss_pred --CCCCCCcccccEEeccCCcccCcC-------CcccccccccceeeCCCCcccee
Q 008876 425 --LTGGGGQTGIRFLNLSRNVLEGQI-------PVSVGRLRSLRSLDLSYNKLGYV 471 (550)
Q Consensus 425 --~~~~~~~~~L~~L~l~~~~i~~~~-------~~~l~~l~~L~~L~l~~n~i~~~ 471 (550)
...+..+++|++|++++|.+.... ...+..+++|+.|++++|++.+.
T Consensus 244 ~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 244 NLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp HHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred HHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence 112344555666666665533221 22344455555566666555443
No 85
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.81 E-value=1.3e-19 Score=164.28 Aligned_cols=104 Identities=25% Similarity=0.378 Sum_probs=50.7
Q ss_pred CCcEEEcCCCcCCCcccccccCCcccchhhccccc-cCccCchhccCCCCCCEEEccc-ccCccccchhhcCCCCcCeEe
Q 008876 63 KLEELHLHENRLSGTLSSSLGNLKNINQLLMHTNQ-FTGVIPDSFTNLTNLVRLDLHC-NYLNGYIPEKIGELQLLEQLD 140 (550)
Q Consensus 63 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~l~~l~~L~~L~l~~-~~~~~~~~~~l~~l~~L~~L~ 140 (550)
+|++|+++++.+....+..+..+++|++|++++|. +....+.+|..+++|++|++++ |.+..+.+..|..+++|++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 45555555555443333344455555555555554 4433334455555555555555 555544444555555555555
Q ss_pred ccCccccCcCCcccCCCCCCC---EEEccCC
Q 008876 141 FSNNLLRGKLPPSLCNLTVIS---VLYLDNN 168 (550)
Q Consensus 141 l~~~~~~~~~~~~l~~~~~L~---~L~l~~~ 168 (550)
+++|.+.. +|. +..+++|+ .|++++|
T Consensus 112 l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N 140 (239)
T 2xwt_C 112 IFNTGLKM-FPD-LTKVYSTDIFFILEITDN 140 (239)
T ss_dssp EEEECCCS-CCC-CTTCCBCCSEEEEEEESC
T ss_pred CCCCCCcc-ccc-cccccccccccEEECCCC
Confidence 55555442 232 33444443 4444444
No 86
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.81 E-value=1.9e-20 Score=179.49 Aligned_cols=257 Identities=21% Similarity=0.218 Sum_probs=155.3
Q ss_pred CcEEEecCccccCCCcccccCC--CcccEEEccCCcccCCCCCcccCCCCccEEEccCCcccCCccchhcccCCCCcEEE
Q 008876 234 LTELYLNGNQLSGQIPKSISQL--SQLIFLSISRNQIEGPLPSGMFSLQNLQTLDLSFNLLNLSSIPMWMAELPSLSRVY 311 (550)
Q Consensus 234 L~~L~l~~~~~~~~~~~~l~~~--~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~ 311 (550)
++.++++++.+. +..+..+ +.++.+++.++.+....+ .+..+++|++|++++|.+....++..+..+++|++|+
T Consensus 49 ~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~-~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~ 124 (336)
T 2ast_B 49 WQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLA-EHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLS 124 (336)
T ss_dssp SSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCC-SCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEE
T ss_pred heeeccccccCC---HHHHHhhhhccceEEEcCCccccccch-hhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEe
Confidence 556666665543 2223333 566666666666654333 2445677777777777654433555566667777777
Q ss_pred eecccccccCCccccCCCCCccEEEcccc-cCCCC-chhhhhccccccEEEccCC-eeecc-CCccccCCC-CCcEEEcc
Q 008876 312 LAGCGIKGKIPEFFRTTPSPLQELDLSVN-HLSGS-IPAWIGSLTQLYSLNLSRN-SLVSS-IPETITNLQ-DLVLLDLH 386 (550)
Q Consensus 312 l~~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~-~~~~~~~~~~L~~L~l~~~-~~~~~-~~~~l~~~~-~L~~L~l~ 386 (550)
+++|.+.+..+..+... ++|++|++++| .+++. ....+..+++|+.|++++| .+++. .+..+..++ +|++|+++
T Consensus 125 L~~~~l~~~~~~~l~~~-~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~ 203 (336)
T 2ast_B 125 LEGLRLSDPIVNTLAKN-SNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLS 203 (336)
T ss_dssp CTTCBCCHHHHHHHTTC-TTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECC
T ss_pred CcCcccCHHHHHHHhcC-CCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeC
Confidence 77666554444444443 33666666666 44432 3344556666666666666 55432 233445566 66666666
Q ss_pred CCccccccccccccCCCCCCCCeEEEeccCCCCCCCCCCCCCCCcccccEEeccCCc-ccCcCCcccccccccceeeCCC
Q 008876 387 SNKLTGSISQVFKIGQRFPDGSLTYIDLSDNGFSSGIELTGGGGQTGIRFLNLSRNV-LEGQIPVSVGRLRSLRSLDLSY 465 (550)
Q Consensus 387 ~~~i~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-i~~~~~~~l~~l~~L~~L~l~~ 465 (550)
+|.+ .+++......+..+++|++|++++|. +++..+..+..+++|++|++++
T Consensus 204 ~~~~---------------------------~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~ 256 (336)
T 2ast_B 204 GYRK---------------------------NLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSR 256 (336)
T ss_dssp SCGG---------------------------GSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTT
T ss_pred CCcc---------------------------cCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCC
Confidence 6632 11100001123356778888888877 6656677888889999999999
Q ss_pred Cc-cceeCCCcCCCCCCCcEEECcCccccccCCCcccCC-CcCceeecCCccccccCCCCCCC
Q 008876 466 NK-LGYVLPGSLANESSLETLKLQNNRFTGRIPSEYLKL-KKLKELDLSHNLLVGEIPAGKPL 526 (550)
Q Consensus 466 n~-i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l-~~L~~L~l~~n~~~~~~~~~~~~ 526 (550)
|. +.......+.++++|++|++++| +.. ..+..+ .+++.|++++|.+++..|.....
T Consensus 257 ~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~---~~~~~l~~~l~~L~l~~n~l~~~~~~~~~~ 315 (336)
T 2ast_B 257 CYDIIPETLLELGEIPTLKTLQVFGI-VPD---GTLQLLKEALPHLQINCSHFTTIARPTIGN 315 (336)
T ss_dssp CTTCCGGGGGGGGGCTTCCEEECTTS-SCT---TCHHHHHHHSTTSEESCCCSCCTTCSSCSS
T ss_pred CCCCCHHHHHHHhcCCCCCEEeccCc-cCH---HHHHHHHhhCcceEEecccCccccCCcccc
Confidence 94 44333335778899999999999 332 234444 34777889999999888876553
No 87
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.81 E-value=3e-22 Score=195.68 Aligned_cols=246 Identities=20% Similarity=0.212 Sum_probs=126.2
Q ss_pred CCCCCccCCCCCcEEeCCCccCCCCCchh----hhhccCCcEEEcCCCcCCC---ccccc-------ccCCcccchhhcc
Q 008876 29 IIPPSIGCLQNLKKLYLYGNKLSGSVPES----ISKLLKLEELHLHENRLSG---TLSSS-------LGNLKNINQLLMH 94 (550)
Q Consensus 29 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~----~~~l~~L~~L~l~~~~~~~---~~~~~-------~~~l~~L~~L~l~ 94 (550)
.+++.+..+++|++|++++|.++...+.. +..+++|++|++++|.+.. ..|.. +..+++|++|+++
T Consensus 23 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls 102 (386)
T 2ca6_A 23 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS 102 (386)
T ss_dssp TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred HHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECC
Confidence 45556677778888888887776543333 4567788888887764431 22322 2456666666666
Q ss_pred ccccCc----cCchhccCCCCCCEEEcccccCccccchhhc----CC---------CCcCeEeccCccccC-cCC---cc
Q 008876 95 TNQFTG----VIPDSFTNLTNLVRLDLHCNYLNGYIPEKIG----EL---------QLLEQLDFSNNLLRG-KLP---PS 153 (550)
Q Consensus 95 ~~~~~~----~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~----~l---------~~L~~L~l~~~~~~~-~~~---~~ 153 (550)
+|.+.. .++..+..+++|++|++++|.+....+..+. .+ ++|++|++++|.+.. ..+ ..
T Consensus 103 ~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 182 (386)
T 2ca6_A 103 DNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKT 182 (386)
T ss_dssp SCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHH
T ss_pred CCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHH
Confidence 666654 2444555666666666666665433222222 22 555555555555431 111 12
Q ss_pred cCCCCCCCEEEccCCcccccccCCCCCCCCCCccEEEcCCCcccccCCCCccCCCCCcEEEcccCccc----Ccchhhcc
Q 008876 154 LCNLTVISVLYLDNNKLEGAIPFPSSPGQMPSLGFLRLQDNNLTGKIPPTFGYLASLRRVSLANNKLE----GAIPTSLG 229 (550)
Q Consensus 154 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~----~~~~~~l~ 229 (550)
+..+++|++|++++|.+..... ....+..+..+++|+.|++++|.+. ...+..+.
T Consensus 183 l~~~~~L~~L~L~~n~l~~~g~---------------------~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~ 241 (386)
T 2ca6_A 183 FQSHRLLHTVKMVQNGIRPEGI---------------------EHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALK 241 (386)
T ss_dssp HHHCTTCCEEECCSSCCCHHHH---------------------HHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGG
T ss_pred HHhCCCcCEEECcCCCCCHhHH---------------------HHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHc
Confidence 3334444444444443321000 0011113444555555555555553 23344455
Q ss_pred CCCCCcEEEecCccccCC----Cccccc--CCCcccEEEccCCcccC----CCCCcc-cCCCCccEEEccCCcccCC
Q 008876 230 NLQDLTELYLNGNQLSGQ----IPKSIS--QLSQLIFLSISRNQIEG----PLPSGM-FSLQNLQTLDLSFNLLNLS 295 (550)
Q Consensus 230 ~~~~L~~L~l~~~~~~~~----~~~~l~--~~~~L~~L~l~~~~~~~----~~~~~~-~~~~~L~~L~l~~~~~~~~ 295 (550)
.+++|++|++++|.++.. .+..+. .+++|+.|++++|.+.. .++..+ ..+++|+.|++++|.++..
T Consensus 242 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~ 318 (386)
T 2ca6_A 242 SWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEE 318 (386)
T ss_dssp GCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTT
T ss_pred cCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcc
Confidence 566666666666655432 222332 25666666666666553 133333 2356666666666655443
No 88
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.81 E-value=4.6e-20 Score=174.25 Aligned_cols=229 Identities=21% Similarity=0.166 Sum_probs=127.7
Q ss_pred CccEEEccCCcccCCccchh--cccCCCCcEEEeecccccccCCcccc-CCCCCccEEEcccccCCCCch----hhhhcc
Q 008876 281 NLQTLDLSFNLLNLSSIPMW--MAELPSLSRVYLAGCGIKGKIPEFFR-TTPSPLQELDLSVNHLSGSIP----AWIGSL 353 (550)
Q Consensus 281 ~L~~L~l~~~~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~----~~~~~~ 353 (550)
.++.+.+.++.+....+... ...+++|++|++++|.+.+..+..+. ...++|++|++++|.+.+... ..+..+
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~ 144 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK 144 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc
Confidence 46666666654433222211 22345677777777777666555542 333347777777777764322 233467
Q ss_pred ccccEEEccCCeeeccCCccccCCCCCcEEEccCCccccccccccccCCCCCCCCeEEEeccCCCCCCCCCCCCCCCccc
Q 008876 354 TQLYSLNLSRNSLVSSIPETITNLQDLVLLDLHSNKLTGSISQVFKIGQRFPDGSLTYIDLSDNGFSSGIELTGGGGQTG 433 (550)
Q Consensus 354 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 433 (550)
++|+.|++++|.+....+..+..+++|++|++++|++......... ..+..+++
T Consensus 145 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~--------------------------~~~~~l~~ 198 (310)
T 4glp_A 145 PGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAA--------------------------LCPHKFPA 198 (310)
T ss_dssp SCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTT--------------------------SCTTSSCC
T ss_pred cCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHH--------------------------HhhhcCCC
Confidence 7888888888888766667777788888888888876421110000 01123445
Q ss_pred ccEEeccCCcccCcCCc---ccccccccceeeCCCCccceeCCCcCCCC---CCCcEEECcCccccccCCCcccCCCcCc
Q 008876 434 IRFLNLSRNVLEGQIPV---SVGRLRSLRSLDLSYNKLGYVLPGSLANE---SSLETLKLQNNRFTGRIPSEYLKLKKLK 507 (550)
Q Consensus 434 L~~L~l~~~~i~~~~~~---~l~~l~~L~~L~l~~n~i~~~~~~~l~~l---~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 507 (550)
|++|++++|.++..... .+..+++|++|++++|.+++..|..+..+ ++|++|++++|.++ .+|..+. ++|+
T Consensus 199 L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~ 275 (310)
T 4glp_A 199 IQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLR 275 (310)
T ss_dssp CCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCS
T ss_pred CCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCC
Confidence 55555555555421111 13455666666666666665545444443 46666666666666 3444442 5666
Q ss_pred eeecCCccccccCCCCCCCCCccccCCCCCCC
Q 008876 508 ELDLSHNLLVGEIPAGKPLSDFPESSFSGNRG 539 (550)
Q Consensus 508 ~L~l~~n~~~~~~~~~~~~~~~~~l~~~~~~~ 539 (550)
+|++++|.+.+ +|....++.++++++++|++
T Consensus 276 ~L~Ls~N~l~~-~~~~~~l~~L~~L~L~~N~l 306 (310)
T 4glp_A 276 VLDLSSNRLNR-APQPDELPEVDNLTLDGNPF 306 (310)
T ss_dssp CEECCSCCCCS-CCCTTSCCCCSCEECSSTTT
T ss_pred EEECCCCcCCC-CchhhhCCCccEEECcCCCC
Confidence 66666666654 23333455566666666654
No 89
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.81 E-value=1e-21 Score=191.92 Aligned_cols=193 Identities=20% Similarity=0.219 Sum_probs=138.8
Q ss_pred CCCccccccCcccEeeCCCCCCCCcC----CCCCccCCCCCcEEeCCCcc---CCCCCchhh-------hhccCCcEEEc
Q 008876 4 SLSPSISLLTSLEVLDLGGLVDLTGI----IPPSIGCLQNLKKLYLYGNK---LSGSVPESI-------SKLLKLEELHL 69 (550)
Q Consensus 4 ~~~~~~~~~~~L~~L~l~~~~~~~~~----~~~~l~~l~~L~~L~l~~~~---~~~~~~~~~-------~~l~~L~~L~l 69 (550)
.+++++..+++|++|++++| .+... ++..+..+++|++|+++++. +++.+|..+ ..+++|++|++
T Consensus 23 ~l~~~l~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~L 101 (386)
T 2ca6_A 23 SVFAVLLEDDSVKEIVLSGN-TIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRL 101 (386)
T ss_dssp TTSHHHHHCSCCCEEECTTS-EECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEEC
T ss_pred HHHHHHhcCCCccEEECCCC-CCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEEC
Confidence 46778899999999999995 55544 33447789999999999964 344456555 57899999999
Q ss_pred CCCcCCC----cccccccCCcccchhhccccccCccCchh----ccCC---------CCCCEEEcccccCccc-cc---h
Q 008876 70 HENRLSG----TLSSSLGNLKNINQLLMHTNQFTGVIPDS----FTNL---------TNLVRLDLHCNYLNGY-IP---E 128 (550)
Q Consensus 70 ~~~~~~~----~~~~~~~~l~~L~~L~l~~~~~~~~~~~~----l~~l---------~~L~~L~l~~~~~~~~-~~---~ 128 (550)
++|.+.. ..+..+..+++|++|++++|.+....+.. +..+ ++|++|++++|.+... .+ .
T Consensus 102 s~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~ 181 (386)
T 2ca6_A 102 SDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAK 181 (386)
T ss_dssp CSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHH
T ss_pred CCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHH
Confidence 9999885 35667889999999999999986444333 3334 8999999999998732 23 4
Q ss_pred hhcCCCCcCeEeccCccccCc-----CCcccCCCCCCCEEEccCCccccc--ccCCCCCCCCCCccEEEcCCCccc
Q 008876 129 KIGELQLLEQLDFSNNLLRGK-----LPPSLCNLTVISVLYLDNNKLEGA--IPFPSSPGQMPSLGFLRLQDNNLT 197 (550)
Q Consensus 129 ~l~~l~~L~~L~l~~~~~~~~-----~~~~l~~~~~L~~L~l~~~~~~~~--~~~~~~~~~~~~L~~L~l~~~~~~ 197 (550)
.+..+++|++|++++|.+... .+..+..+++|+.|++++|.+... ..++..+..+++|++|++++|.+.
T Consensus 182 ~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~ 257 (386)
T 2ca6_A 182 TFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLS 257 (386)
T ss_dssp HHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCC
T ss_pred HHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCc
Confidence 677899999999999987621 222566777777777777765311 111123445555555555555544
No 90
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.81 E-value=8.7e-19 Score=160.04 Aligned_cols=180 Identities=26% Similarity=0.251 Sum_probs=140.0
Q ss_pred CCCcEEEeecccccccCCccccCCCCCccEEEcccccCCCCchhhhhccccccEEEccCCeeeccCCccccCCCCCcEEE
Q 008876 305 PSLSRVYLAGCGIKGKIPEFFRTTPSPLQELDLSVNHLSGSIPAWIGSLTQLYSLNLSRNSLVSSIPETITNLQDLVLLD 384 (550)
Q Consensus 305 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~ 384 (550)
+..+.+++.++.+.... .. .+.+++.|++++|.+.......+..+++|+.|++++|.+....+..+..+++|++|+
T Consensus 14 ~~~~~l~~~~~~l~~~p-~~---~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 89 (251)
T 3m19_A 14 EGKKEVDCQGKSLDSVP-SG---IPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLG 89 (251)
T ss_dssp GGGTEEECTTCCCSSCC-SC---CCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCeEEecCCCCccccC-CC---CCCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEE
Confidence 34567777777666333 22 234588888888888877777788888888888888888877777788888888888
Q ss_pred ccCCccccccccccccCCCCCCCCeEEEeccCCCCCCCCCCCCCCCcccccEEeccCCcccCcCCcccccccccceeeCC
Q 008876 385 LHSNKLTGSISQVFKIGQRFPDGSLTYIDLSDNGFSSGIELTGGGGQTGIRFLNLSRNVLEGQIPVSVGRLRSLRSLDLS 464 (550)
Q Consensus 385 l~~~~i~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~ 464 (550)
+++|+++......+... ++|++|++++|.+.+ ++...+..+++|++|++++|.+++..+..+..+++|++|+++
T Consensus 90 L~~n~l~~~~~~~~~~l-----~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~ 163 (251)
T 3m19_A 90 LANNQLASLPLGVFDHL-----TQLDKLYLGGNQLKS-LPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLS 163 (251)
T ss_dssp CTTSCCCCCCTTTTTTC-----TTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCCcccccChhHhccc-----CCCCEEEcCCCcCCC-cChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECC
Confidence 88888887666555443 788888888888874 444456778888888888888887777778888888888888
Q ss_pred CCccceeCCCcCCCCCCCcEEECcCccccc
Q 008876 465 YNKLGYVLPGSLANESSLETLKLQNNRFTG 494 (550)
Q Consensus 465 ~n~i~~~~~~~l~~l~~L~~L~l~~~~~~~ 494 (550)
+|+++...+..+..+++|++|++++|++..
T Consensus 164 ~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 193 (251)
T 3m19_A 164 TNQLQSVPHGAFDRLGKLQTITLFGNQFDC 193 (251)
T ss_dssp SSCCSCCCTTTTTTCTTCCEEECCSCCBCT
T ss_pred CCcCCccCHHHHhCCCCCCEEEeeCCceeC
Confidence 888887777778888888888888888874
No 91
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.80 E-value=8.3e-19 Score=165.11 Aligned_cols=194 Identities=23% Similarity=0.370 Sum_probs=109.4
Q ss_pred ccCCCCCcEEeCCCccCCCCCchhhhhccCCcEEEcCCCcCCCcccccccCCcccchhhccccccCccCchhccCCCCCC
Q 008876 34 IGCLQNLKKLYLYGNKLSGSVPESISKLLKLEELHLHENRLSGTLSSSLGNLKNINQLLMHTNQFTGVIPDSFTNLTNLV 113 (550)
Q Consensus 34 l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~ 113 (550)
...+++|++|+++++.++. ++ .+..+++|++|++++|.+....+ +..+++|++|++++|.+... ..+..+++|+
T Consensus 37 ~~~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~ 110 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIK 110 (308)
T ss_dssp HHHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCC
T ss_pred HHHcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc--hhhcCCCCCC
Confidence 3456677777777776653 33 46667777777777776653322 66667777777777666532 2466667777
Q ss_pred EEEcccccCccccchhhcCCCCcCeEeccCccccCcCCcccCCCCCCCEEEccCCcccccccCCCCCCCCCCccEEEcCC
Q 008876 114 RLDLHCNYLNGYIPEKIGELQLLEQLDFSNNLLRGKLPPSLCNLTVISVLYLDNNKLEGAIPFPSSPGQMPSLGFLRLQD 193 (550)
Q Consensus 114 ~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 193 (550)
+|++++|.+.... .+..+++|++|++++|.+... +. +..+++|+.|++++|.+..... +..+++|+.|++++
T Consensus 111 ~L~l~~n~l~~~~--~l~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~~~~----l~~l~~L~~L~l~~ 182 (308)
T 1h6u_A 111 TLDLTSTQITDVT--PLAGLSNLQVLYLDLNQITNI-SP-LAGLTNLQYLSIGNAQVSDLTP----LANLSKLTTLKADD 182 (308)
T ss_dssp EEECTTSCCCCCG--GGTTCTTCCEEECCSSCCCCC-GG-GGGCTTCCEEECCSSCCCCCGG----GTTCTTCCEEECCS
T ss_pred EEECCCCCCCCch--hhcCCCCCCEEECCCCccCcC-cc-ccCCCCccEEEccCCcCCCChh----hcCCCCCCEEECCC
Confidence 7777776665432 266666667776666666532 21 5555666666666665543221 44555555555555
Q ss_pred CcccccCCCCccCCCCCcEEEcccCcccCcchhhccCCCCCcEEEecCcccc
Q 008876 194 NNLTGKIPPTFGYLASLRRVSLANNKLEGAIPTSLGNLQDLTELYLNGNQLS 245 (550)
Q Consensus 194 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 245 (550)
|.+....+ +..+++|++|++++|.+.... .+..+++|++|++++|+++
T Consensus 183 n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~ 230 (308)
T 1h6u_A 183 NKISDISP--LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTIT 230 (308)
T ss_dssp SCCCCCGG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEE
T ss_pred CccCcChh--hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeee
Confidence 55543211 444555555555555554332 2444555555555555543
No 92
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.80 E-value=1.2e-19 Score=171.49 Aligned_cols=205 Identities=16% Similarity=0.194 Sum_probs=151.7
Q ss_pred ccEEEcccccCCCCchh---hhhccccccEEEccCCeeeccCCccc--cCCCCCcEEEccCCccccccccccccCCCCCC
Q 008876 332 LQELDLSVNHLSGSIPA---WIGSLTQLYSLNLSRNSLVSSIPETI--TNLQDLVLLDLHSNKLTGSISQVFKIGQRFPD 406 (550)
Q Consensus 332 L~~L~l~~~~~~~~~~~---~~~~~~~L~~L~l~~~~~~~~~~~~l--~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~ 406 (550)
++.+.+.++.+...... .+..+++|++|++++|.+.+..+..+ ..+++|++|++++|.++.......... ....
T Consensus 66 l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~-~~~~ 144 (310)
T 4glp_A 66 VRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQ-QWLK 144 (310)
T ss_dssp CCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHH-TTBC
T ss_pred eeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHH-hhhc
Confidence 56666666665422111 12234679999999998887777666 788899999999998875433111000 0022
Q ss_pred CCeEEEeccCCCCCCCCCCCCCCCcccccEEeccCCcccCc----CCcccccccccceeeCCCCccceeCC--C-cCCCC
Q 008876 407 GSLTYIDLSDNGFSSGIELTGGGGQTGIRFLNLSRNVLEGQ----IPVSVGRLRSLRSLDLSYNKLGYVLP--G-SLANE 479 (550)
Q Consensus 407 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~----~~~~l~~l~~L~~L~l~~n~i~~~~~--~-~l~~l 479 (550)
++|++|++++|.+.+ .....+..+++|++|++++|.+.+. ....+..+++|++|++++|.++.... . .+.++
T Consensus 145 ~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l 223 (310)
T 4glp_A 145 PGLKVLSIAQAHSPA-FSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAG 223 (310)
T ss_dssp SCCCEEEEECCSSCC-CCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHT
T ss_pred cCCCEEEeeCCCcch-hhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcC
Confidence 789999999999865 3444778899999999999997642 12334788999999999999974321 1 24678
Q ss_pred CCCcEEECcCccccccCCCcccCC---CcCceeecCCccccccCCCCCCCCCccccCCCCCCCC
Q 008876 480 SSLETLKLQNNRFTGRIPSEYLKL---KKLKELDLSHNLLVGEIPAGKPLSDFPESSFSGNRGL 540 (550)
Q Consensus 480 ~~L~~L~l~~~~~~~~~~~~~~~l---~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~~~~~~~ 540 (550)
++|++|++++|.+.+..|..+..+ ++|++|++++|.+. .+|.... +++++|++++|...
T Consensus 224 ~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~-~~L~~L~Ls~N~l~ 285 (310)
T 4glp_A 224 VQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP-AKLRVLDLSSNRLN 285 (310)
T ss_dssp CCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC-SCCSCEECCSCCCC
T ss_pred CCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc-CCCCEEECCCCcCC
Confidence 999999999999998878777776 79999999999998 7888765 89999999999654
No 93
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.80 E-value=1.1e-20 Score=181.08 Aligned_cols=222 Identities=18% Similarity=0.181 Sum_probs=116.1
Q ss_pred CcEEeCCCccCCCCCchhhhhc--cCCcEEEcCCCcCCCcccccccCCcccchhhccccccCcc-CchhccCCCCCCEEE
Q 008876 40 LKKLYLYGNKLSGSVPESISKL--LKLEELHLHENRLSGTLSSSLGNLKNINQLLMHTNQFTGV-IPDSFTNLTNLVRLD 116 (550)
Q Consensus 40 L~~L~l~~~~~~~~~~~~~~~l--~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~l~~l~~L~~L~ 116 (550)
++.++++++.+. +..+..+ ++++.|+++++.+....+ .+..+++|++|++++|.+... .+..+..+++|++|+
T Consensus 49 ~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~-~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~ 124 (336)
T 2ast_B 49 WQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLA-EHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLS 124 (336)
T ss_dssp SSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCC-SCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEE
T ss_pred heeeccccccCC---HHHHHhhhhccceEEEcCCccccccch-hhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEe
Confidence 566666665543 4445555 666666666666553322 244566666666666665433 444555666666666
Q ss_pred cccccCccccchhhcCCCCcCeEeccCc-cccC-cCCcccCCCCCCCEEEccCCcccccccCCCCCCCCCCccEEEcCCC
Q 008876 117 LHCNYLNGYIPEKIGELQLLEQLDFSNN-LLRG-KLPPSLCNLTVISVLYLDNNKLEGAIPFPSSPGQMPSLGFLRLQDN 194 (550)
Q Consensus 117 l~~~~~~~~~~~~l~~l~~L~~L~l~~~-~~~~-~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 194 (550)
+++|.+.+..+..+..+++|++|++++| .+++ ..+..+..+++|++|++++|.
T Consensus 125 L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~------------------------- 179 (336)
T 2ast_B 125 LEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCF------------------------- 179 (336)
T ss_dssp CTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCT-------------------------
T ss_pred CcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCC-------------------------
Confidence 6666555444555555666666666655 3332 122223344444444444440
Q ss_pred ccccc-CCCCccCCC-CCcEEEcccCc--cc-CcchhhccCCCCCcEEEecCcc-ccCCCcccccCCCcccEEEccCCc-
Q 008876 195 NLTGK-IPPTFGYLA-SLRRVSLANNK--LE-GAIPTSLGNLQDLTELYLNGNQ-LSGQIPKSISQLSQLIFLSISRNQ- 267 (550)
Q Consensus 195 ~~~~~-~~~~l~~~~-~L~~L~l~~~~--~~-~~~~~~l~~~~~L~~L~l~~~~-~~~~~~~~l~~~~~L~~L~l~~~~- 267 (550)
.+... .+..+..++ +|++|++++|. ++ ...+..+..+++|++|++++|. +++..+..+..+++|+.|++++|.
T Consensus 180 ~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~ 259 (336)
T 2ast_B 180 DFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYD 259 (336)
T ss_dssp TCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTT
T ss_pred CcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCC
Confidence 33321 122234445 55555555552 22 1233444556666666666666 444444455566666666666663
Q ss_pred ccCCCCCcccCCCCccEEEccCC
Q 008876 268 IEGPLPSGMFSLQNLQTLDLSFN 290 (550)
Q Consensus 268 ~~~~~~~~~~~~~~L~~L~l~~~ 290 (550)
+.+.....+..+++|+.|++++|
T Consensus 260 ~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 260 IIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp CCGGGGGGGGGCTTCCEEECTTS
T ss_pred CCHHHHHHHhcCCCCCEEeccCc
Confidence 22121223445666667766666
No 94
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.80 E-value=2.1e-19 Score=160.08 Aligned_cols=137 Identities=20% Similarity=0.177 Sum_probs=94.6
Q ss_pred eEEEeccCCCCCCCCCCCCCCCcccccEEeccCCcccCcCCcccccccccceeeCCCCccceeCCCcCCCCCCCcEEECc
Q 008876 409 LTYIDLSDNGFSSGIELTGGGGQTGIRFLNLSRNVLEGQIPVSVGRLRSLRSLDLSYNKLGYVLPGSLANESSLETLKLQ 488 (550)
Q Consensus 409 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~ 488 (550)
+++|++++|.+.+..+...+..+++|++|++++|.+++..+..|.++++|++|++++|.++...+..|.++++|++|+++
T Consensus 34 ~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 113 (220)
T 2v70_A 34 TAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLR 113 (220)
T ss_dssp CSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECT
T ss_pred CCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECC
Confidence 34444444444433233345566777777777777776666677777777777777777777666667777777777777
Q ss_pred CccccccCCCcccCCCcCceeecCCccccccCCCCCC-CCCccccCCCCCCCCCCCCC
Q 008876 489 NNRFTGRIPSEYLKLKKLKELDLSHNLLVGEIPAGKP-LSDFPESSFSGNRGLCGKPL 545 (550)
Q Consensus 489 ~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~ 545 (550)
+|.+....|..+..+++|++|++++|.+.+..|..+. +++++++++++|||.|+|++
T Consensus 114 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l 171 (220)
T 2v70_A 114 SNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCYL 171 (220)
T ss_dssp TSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGGG
T ss_pred CCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCch
Confidence 7777766677777777777777777777776665544 66777777777888777764
No 95
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.79 E-value=1.2e-18 Score=163.96 Aligned_cols=196 Identities=27% Similarity=0.389 Sum_probs=166.3
Q ss_pred cccccCcccEeeCCCCCCCCcCCCCCccCCCCCcEEeCCCccCCCCCchhhhhccCCcEEEcCCCcCCCcccccccCCcc
Q 008876 8 SISLLTSLEVLDLGGLVDLTGIIPPSIGCLQNLKKLYLYGNKLSGSVPESISKLLKLEELHLHENRLSGTLSSSLGNLKN 87 (550)
Q Consensus 8 ~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~ 87 (550)
.++++++|++|++++| .+. .++ .+..+++|++|++++|.+++. +. +..+++|++|++++|.+... ..+..+++
T Consensus 36 ~~~~l~~L~~L~l~~~-~i~-~l~-~~~~l~~L~~L~L~~n~i~~~-~~-~~~l~~L~~L~L~~n~l~~~--~~~~~l~~ 108 (308)
T 1h6u_A 36 TQADLDGITTLSAFGT-GVT-TIE-GVQYLNNLIGLELKDNQITDL-AP-LKNLTKITELELSGNPLKNV--SAIAGLQS 108 (308)
T ss_dssp CHHHHHTCCEEECTTS-CCC-CCT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCCSCCEEECCSCCCSCC--GGGTTCTT
T ss_pred cHHHcCCcCEEEeeCC-Ccc-Cch-hhhccCCCCEEEccCCcCCCC-hh-HccCCCCCEEEccCCcCCCc--hhhcCCCC
Confidence 3567999999999995 444 344 689999999999999999854 44 89999999999999998743 36889999
Q ss_pred cchhhccccccCccCchhccCCCCCCEEEcccccCccccchhhcCCCCcCeEeccCccccCcCCcccCCCCCCCEEEccC
Q 008876 88 INQLLMHTNQFTGVIPDSFTNLTNLVRLDLHCNYLNGYIPEKIGELQLLEQLDFSNNLLRGKLPPSLCNLTVISVLYLDN 167 (550)
Q Consensus 88 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~ 167 (550)
|++|++++|.+... + .+..+++|++|++++|.+....+ +..+++|++|++++|.+.+. +. +..+++|+.|++++
T Consensus 109 L~~L~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~l~~ 182 (308)
T 1h6u_A 109 IKTLDLTSTQITDV-T-PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDL-TP-LANLSKLTTLKADD 182 (308)
T ss_dssp CCEEECTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCS
T ss_pred CCEEECCCCCCCCc-h-hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCC-hh-hcCCCCCCEEECCC
Confidence 99999999999854 3 48999999999999999986533 88999999999999998843 33 88999999999999
Q ss_pred CcccccccCCCCCCCCCCccEEEcCCCcccccCCCCccCCCCCcEEEcccCcccC
Q 008876 168 NKLEGAIPFPSSPGQMPSLGFLRLQDNNLTGKIPPTFGYLASLRRVSLANNKLEG 222 (550)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 222 (550)
|.+.+..+ +..+++|++|++++|.+.... .+..+++|+.|++++|.+..
T Consensus 183 n~l~~~~~----l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 183 NKISDISP----LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp SCCCCCGG----GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEEC
T ss_pred CccCcChh----hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeeec
Confidence 98876533 678999999999999988544 37889999999999999864
No 96
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.79 E-value=6.8e-19 Score=156.80 Aligned_cols=137 Identities=25% Similarity=0.219 Sum_probs=112.0
Q ss_pred CeEEEeccCCCCCCCCCCCCCCCcccccEEeccCCcccCcCCcccccccccceeeCCCCccceeCCCcCCCCCCCcEEEC
Q 008876 408 SLTYIDLSDNGFSSGIELTGGGGQTGIRFLNLSRNVLEGQIPVSVGRLRSLRSLDLSYNKLGYVLPGSLANESSLETLKL 487 (550)
Q Consensus 408 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l 487 (550)
.++.|++++|.+.. +....+..+++|++|++++|.+++..+..|.++++|++|+|++|.++.+.+..|.++++|++|++
T Consensus 33 ~l~~L~l~~n~i~~-i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L 111 (220)
T 2v9t_B 33 TITEIRLEQNTIKV-IPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLL 111 (220)
T ss_dssp TCCEEECCSSCCCE-ECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCEEECCCCcCCC-cCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEEC
Confidence 44455555554443 22235667888899999999998778889999999999999999999777777888999999999
Q ss_pred cCccccccCCCcccCCCcCceeecCCccccccCCCCCC-CCCccccCCCCCCCCCCCCC
Q 008876 488 QNNRFTGRIPSEYLKLKKLKELDLSHNLLVGEIPAGKP-LSDFPESSFSGNRGLCGKPL 545 (550)
Q Consensus 488 ~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~ 545 (550)
++|.+....+..|..+++|+.|++++|.+.+..+..+. +++++++++++|||.|+|++
T Consensus 112 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~l 170 (220)
T 2v9t_B 112 NANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDCHL 170 (220)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECSGGG
T ss_pred CCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCCCcc
Confidence 99999988888899999999999999999876665444 78899999999999999976
No 97
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.75 E-value=1.8e-18 Score=166.82 Aligned_cols=137 Identities=26% Similarity=0.209 Sum_probs=105.0
Q ss_pred CCeEEEeccCCCCCCCCCCCCCCCcccccEEeccCCcccCcCCcccccccccceeeCCCCccceeCCCcCCCCCCCcEEE
Q 008876 407 GSLTYIDLSDNGFSSGIELTGGGGQTGIRFLNLSRNVLEGQIPVSVGRLRSLRSLDLSYNKLGYVLPGSLANESSLETLK 486 (550)
Q Consensus 407 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~ 486 (550)
++|++|++++|.+.. +....+..+++|++|++++|.++...+..|.++++|+.|+|++|.++.+.+..|.++++|++|+
T Consensus 64 ~~L~~L~L~~N~i~~-i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~ 142 (361)
T 2xot_A 64 TNLHSLLLSHNHLNF-ISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLY 142 (361)
T ss_dssp TTCCEEECCSSCCCE-ECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred cccCEEECCCCcCCc-cChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEE
Confidence 445555555554443 2223566788899999999999877777899999999999999999999899999999999999
Q ss_pred CcCccccccCCCcc---cCCCcCceeecCCccccccCCC-CCC-CCC--ccccCCCCCCCCCCCCC
Q 008876 487 LQNNRFTGRIPSEY---LKLKKLKELDLSHNLLVGEIPA-GKP-LSD--FPESSFSGNRGLCGKPL 545 (550)
Q Consensus 487 l~~~~~~~~~~~~~---~~l~~L~~L~l~~n~~~~~~~~-~~~-~~~--~~~l~~~~~~~~~~~~~ 545 (550)
+++|.+....+..+ ..+++|+.|++++|.+.. +|. .+. ++. ++.+++.+|||.|+|++
T Consensus 143 L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~~~l~~l~l~~N~~~C~C~l 207 (361)
T 2xot_A 143 LSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKK-LPLTDLQKLPAWVKNGLYLHNNPLECDCKL 207 (361)
T ss_dssp CCSSCCCSCCGGGTC----CTTCCEEECCSSCCCC-CCHHHHHHSCHHHHTTEECCSSCEECCHHH
T ss_pred CCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCc-cCHHHhhhccHhhcceEEecCCCccCCcCc
Confidence 99999995433344 569999999999999975 442 222 333 47899999999999975
No 98
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.75 E-value=1.8e-17 Score=148.60 Aligned_cols=135 Identities=22% Similarity=0.188 Sum_probs=100.9
Q ss_pred CeEEEeccCCCCCCCCCCCCCCCcccccEEeccCCcccCcCCcccccccccceeeCCCCccceeCCCcCCCCCCCcEEEC
Q 008876 408 SLTYIDLSDNGFSSGIELTGGGGQTGIRFLNLSRNVLEGQIPVSVGRLRSLRSLDLSYNKLGYVLPGSLANESSLETLKL 487 (550)
Q Consensus 408 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l 487 (550)
+|++|++++|.+.+..+ ..+..+++|++|++++|.++...+..|..+++|+.|+|++|.++...+..+..+++|++|++
T Consensus 41 ~L~~L~Ls~n~i~~~~~-~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L 119 (229)
T 3e6j_A 41 NAQILYLHDNQITKLEP-GVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFM 119 (229)
T ss_dssp TCSEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCEEEcCCCccCccCH-HHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEec
Confidence 44444444444443222 24566777888888888887666667788888888888888888777777788888888888
Q ss_pred cCccccccCCCcccCCCcCceeecCCccccccCCCCC-CCCCccccCCCCCCCCCCCC
Q 008876 488 QNNRFTGRIPSEYLKLKKLKELDLSHNLLVGEIPAGK-PLSDFPESSFSGNRGLCGKP 544 (550)
Q Consensus 488 ~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~ 544 (550)
++|.+. .+|..+..+++|+.|++++|.+.+..+..+ .+++++++++.+|||.|.|+
T Consensus 120 s~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 176 (229)
T 3e6j_A 120 CCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECR 176 (229)
T ss_dssp CSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBG
T ss_pred cCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcc
Confidence 888888 677778888888888888888875444433 37788888888999988885
No 99
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.74 E-value=1.7e-17 Score=159.28 Aligned_cols=241 Identities=19% Similarity=0.139 Sum_probs=152.2
Q ss_pred cEEEccCCcccCCCCCcccCCCCccEEEccCCcccCCccch-hcccCCCCcEEEeecccccccCCc-cccCCCCCccEEE
Q 008876 259 IFLSISRNQIEGPLPSGMFSLQNLQTLDLSFNLLNLSSIPM-WMAELPSLSRVYLAGCGIKGKIPE-FFRTTPSPLQELD 336 (550)
Q Consensus 259 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~~L~~L~ 336 (550)
+.++.++++++ .+|..+ .+++++|++++|.++ .++. .+..+++|++|++++|.+....+. .+.....-++.+.
T Consensus 12 ~~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~--~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~ 86 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLR--VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRI 86 (350)
T ss_dssp TEEEEESTTCC-SCCTTC--CTTCSEEEEESCCCS--EECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEE
T ss_pred CEEEecCCCCC-ccCcCc--CCCCCEEEccCCcCC--CcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhc
Confidence 56777777777 556544 357899999988654 3443 577888899999998887554443 3444444233455
Q ss_pred cccccCCCCchhhhhccccccEEEccCCeeeccCCccccCCCCCcEEEccC-CccccccccccccCCCCCCCCeEEEecc
Q 008876 337 LSVNHLSGSIPAWIGSLTQLYSLNLSRNSLVSSIPETITNLQDLVLLDLHS-NKLTGSISQVFKIGQRFPDGSLTYIDLS 415 (550)
Q Consensus 337 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~-~~i~~~~~~~~~~~~~~~~~~L~~L~l~ 415 (550)
+..+++....+..|..+++|+.|++++|.+.......+....++..+++.+ +++.......+.... ..++.|+++
T Consensus 87 ~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~----~~l~~L~L~ 162 (350)
T 4ay9_X 87 EKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLS----FESVILWLN 162 (350)
T ss_dssp EEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSB----SSCEEEECC
T ss_pred ccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcc----hhhhhhccc
Confidence 666777766667777888888888888887766555555666777777755 456555444443321 356777777
Q ss_pred CCCCCCCCCCCCCCCcccccEEeccC-CcccCcCCcccccccccceeeCCCCccceeCCCcCCCCCCCcEEECcCccccc
Q 008876 416 DNGFSSGIELTGGGGQTGIRFLNLSR-NVLEGQIPVSVGRLRSLRSLDLSYNKLGYVLPGSLANESSLETLKLQNNRFTG 494 (550)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~L~~L~l~~-~~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~~~~ 494 (550)
+|++.. ++...+ ...+++++++.+ |.++.+.+.+|.++++|++|++++|+++.+.+.. +.+|+.|.+.++....
T Consensus 163 ~N~i~~-i~~~~f-~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~---~~~L~~L~~l~~~~l~ 237 (350)
T 4ay9_X 163 KNGIQE-IHNSAF-NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYG---LENLKKLRARSTYNLK 237 (350)
T ss_dssp SSCCCE-ECTTSS-TTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSS---CTTCCEEECTTCTTCC
T ss_pred cccccC-CChhhc-cccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhh---hccchHhhhccCCCcC
Confidence 777653 332223 335677777753 5555444556677777777777777777543333 3455666666665554
Q ss_pred cCCCcccCCCcCceeecCCc
Q 008876 495 RIPSEYLKLKKLKELDLSHN 514 (550)
Q Consensus 495 ~~~~~~~~l~~L~~L~l~~n 514 (550)
.+| .+.++++|+.+++.++
T Consensus 238 ~lP-~l~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 238 KLP-TLEKLVALMEASLTYP 256 (350)
T ss_dssp CCC-CTTTCCSCCEEECSCH
T ss_pred cCC-CchhCcChhhCcCCCC
Confidence 555 3666777777777653
No 100
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.74 E-value=4.5e-17 Score=156.41 Aligned_cols=240 Identities=18% Similarity=0.158 Sum_probs=140.7
Q ss_pred cEEeCCCccCCCCCchhhhhccCCcEEEcCCCcCCCcccccccCCcccchhhccccccCccC-chhccCCCCCCE-EEcc
Q 008876 41 KKLYLYGNKLSGSVPESISKLLKLEELHLHENRLSGTLSSSLGNLKNINQLLMHTNQFTGVI-PDSFTNLTNLVR-LDLH 118 (550)
Q Consensus 41 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~l~~l~~L~~-L~l~ 118 (550)
+.++.++++++ .+|..+. +++++|++++|.+..+.+.+|.++++|++|++++|.+.+.. +.+|.+++++++ +.+.
T Consensus 12 ~~v~C~~~~Lt-~iP~~l~--~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp TEEEEESTTCC-SCCTTCC--TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred CEEEecCCCCC-ccCcCcC--CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 45666666666 5565542 46777777777776444456777777777777777765433 345677777665 3445
Q ss_pred cccCccccchhhcCCCCcCeEeccCccccCcCCcccCCCCCCCEEEccCCcccccccCCCCCCCC-CCccEEEcCCCccc
Q 008876 119 CNYLNGYIPEKIGELQLLEQLDFSNNLLRGKLPPSLCNLTVISVLYLDNNKLEGAIPFPSSPGQM-PSLGFLRLQDNNLT 197 (550)
Q Consensus 119 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~ 197 (550)
.+.+..+.+.+|..+++|++|++++|.+....+..+....++..+++.++......+. ..+..+ ..++.|++++|.+.
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~-~~f~~~~~~l~~L~L~~N~i~ 167 (350)
T 4ay9_X 89 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIER-NSFVGLSFESVILWLNKNGIQ 167 (350)
T ss_dssp ETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECT-TSSTTSBSSCEEEECCSSCCC
T ss_pred CCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccc-cchhhcchhhhhhcccccccc
Confidence 5667666667777777888888877777644444444555566666654322211111 223333 35777777777776
Q ss_pred ccCCCCccCCCCCcEEEccc-CcccCcchhhccCCCCCcEEEecCccccCCCcccccCCCcccEEEccCCcccCCCCCcc
Q 008876 198 GKIPPTFGYLASLRRVSLAN-NKLEGAIPTSLGNLQDLTELYLNGNQLSGQIPKSISQLSQLIFLSISRNQIEGPLPSGM 276 (550)
Q Consensus 198 ~~~~~~l~~~~~L~~L~l~~-~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~ 276 (550)
...+..+ ...+++++.+.+ +.+.......|..+++|++|++++|+++...... +.+|+.|.+.++.....++ .+
T Consensus 168 ~i~~~~f-~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~---~~~L~~L~~l~~~~l~~lP-~l 242 (350)
T 4ay9_X 168 EIHNSAF-NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYG---LENLKKLRARSTYNLKKLP-TL 242 (350)
T ss_dssp EECTTSS-TTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSS---CTTCCEEECTTCTTCCCCC-CT
T ss_pred CCChhhc-cccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhh---hccchHhhhccCCCcCcCC-Cc
Confidence 4433333 345677777764 4444444455677777777777777776443333 3445555544443222333 24
Q ss_pred cCCCCccEEEccC
Q 008876 277 FSLQNLQTLDLSF 289 (550)
Q Consensus 277 ~~~~~L~~L~l~~ 289 (550)
..+++|+.+++.+
T Consensus 243 ~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 243 EKLVALMEASLTY 255 (350)
T ss_dssp TTCCSCCEEECSC
T ss_pred hhCcChhhCcCCC
Confidence 5566777777654
No 101
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.73 E-value=6.6e-17 Score=143.02 Aligned_cols=159 Identities=28% Similarity=0.247 Sum_probs=109.4
Q ss_pred ccccEEEccCCeeeccCCccccCCCCCcEEEccCCccccccccccccCCCCCCCCeEEEeccCCCCCCCCCCCCCCCccc
Q 008876 354 TQLYSLNLSRNSLVSSIPETITNLQDLVLLDLHSNKLTGSISQVFKIGQRFPDGSLTYIDLSDNGFSSGIELTGGGGQTG 433 (550)
Q Consensus 354 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 433 (550)
++++.|++++|.+....+..+..+++|++|++++|+++......+... ++|++|++++|.+.+ +....+..+++
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l-----~~L~~L~Ls~n~l~~-~~~~~~~~l~~ 101 (208)
T 2o6s_A 28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKL-----TSLTYLNLSTNQLQS-LPNGVFDKLTQ 101 (208)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTC-----TTCCEEECCSSCCCC-CCTTTTTTCTT
T ss_pred CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCC-----CCcCEEECCCCcCCc-cCHhHhcCccC
Confidence 345555555555544444444455555555555555544433333222 455555555555543 23334667888
Q ss_pred ccEEeccCCcccCcCCcccccccccceeeCCCCccceeCCCcCCCCCCCcEEECcCccccccCCCcccCCCcCceeecCC
Q 008876 434 IRFLNLSRNVLEGQIPVSVGRLRSLRSLDLSYNKLGYVLPGSLANESSLETLKLQNNRFTGRIPSEYLKLKKLKELDLSH 513 (550)
Q Consensus 434 L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 513 (550)
|++|++++|.+++..+..+..+++|++|++++|.++...+..+..+++|++|++++|++. ..+++|+.|+++.
T Consensus 102 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~-------~~~~~l~~L~~~~ 174 (208)
T 2o6s_A 102 LKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD-------CTCPGIRYLSEWI 174 (208)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC-------CCTTTTHHHHHHH
T ss_pred CCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee-------cCCCCHHHHHHHH
Confidence 899999999888777777888999999999999999877777888999999999999765 3457899999999
Q ss_pred ccccccCCCCCC
Q 008876 514 NLLVGEIPAGKP 525 (550)
Q Consensus 514 n~~~~~~~~~~~ 525 (550)
|.+.+.+|....
T Consensus 175 n~~~g~ip~~~~ 186 (208)
T 2o6s_A 175 NKHSGVVRNSAG 186 (208)
T ss_dssp HHCTTTBBCTTS
T ss_pred HhCCceeeccCc
Confidence 999999997644
No 102
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.71 E-value=8.3e-17 Score=142.40 Aligned_cols=132 Identities=24% Similarity=0.287 Sum_probs=81.2
Q ss_pred CCCcEEeCCCccCCCCCchhhhhccCCcEEEcCCCcCCCcccccccCCcccchhhccccccCccCchhccCCCCCCEEEc
Q 008876 38 QNLKKLYLYGNKLSGSVPESISKLLKLEELHLHENRLSGTLSSSLGNLKNINQLLMHTNQFTGVIPDSFTNLTNLVRLDL 117 (550)
Q Consensus 38 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 117 (550)
++|++|+++++.++...+..|..+++|++|++++|.+....+..+..+++|++|++++|.+....+..+..+++|++|++
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 107 (208)
T 2o6s_A 28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELAL 107 (208)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEc
Confidence 46777777777776555555666777777777777666444445566666666666666666544445566666666666
Q ss_pred ccccCccccchhhcCCCCcCeEeccCccccCcCCcccCCCCCCCEEEccCCc
Q 008876 118 HCNYLNGYIPEKIGELQLLEQLDFSNNLLRGKLPPSLCNLTVISVLYLDNNK 169 (550)
Q Consensus 118 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 169 (550)
++|.+....+..+..+++|++|++++|.+....+..+..+++|+.|++++|.
T Consensus 108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 159 (208)
T 2o6s_A 108 NTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNP 159 (208)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCC
T ss_pred CCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCC
Confidence 6666665544555666666666666666554433344555555555555553
No 103
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.70 E-value=1.4e-16 Score=148.49 Aligned_cols=171 Identities=25% Similarity=0.311 Sum_probs=87.2
Q ss_pred cCCCCcEEEeecccccccCCccccCCCCCccEEEcccccCCCCchhhhhccccccEEEccCCeeeccCCccccCCCCCcE
Q 008876 303 ELPSLSRVYLAGCGIKGKIPEFFRTTPSPLQELDLSVNHLSGSIPAWIGSLTQLYSLNLSRNSLVSSIPETITNLQDLVL 382 (550)
Q Consensus 303 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~ 382 (550)
.+++|+.|++++|.+.... .+... ++|+.|++++|.+.+... +..+++|+.|++++|.+... ..+..+++|++
T Consensus 44 ~l~~L~~L~l~~~~i~~~~--~~~~l-~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~ 116 (291)
T 1h6t_A 44 ELNSIDQIIANNSDIKSVQ--GIQYL-PNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDL--SSLKDLKKLKS 116 (291)
T ss_dssp HHHTCCEEECTTSCCCCCT--TGGGC-TTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCG--GGGTTCTTCCE
T ss_pred hcCcccEEEccCCCcccCh--hHhcC-CCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCCC--hhhccCCCCCE
Confidence 4556666666666554321 12222 235555555555553322 45555555555555555432 12445555555
Q ss_pred EEccCCccccccccccccCCCCCCCCeEEEeccCCCCCCCCCCCCCCCcccccEEeccCCcccCcCCcccccccccceee
Q 008876 383 LDLHSNKLTGSISQVFKIGQRFPDGSLTYIDLSDNGFSSGIELTGGGGQTGIRFLNLSRNVLEGQIPVSVGRLRSLRSLD 462 (550)
Q Consensus 383 L~l~~~~i~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~ 462 (550)
|++++|+++.. ..+..+++|+.|++++|.+++. ..+..+++|++|+
T Consensus 117 L~L~~n~i~~~--------------------------------~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~ 162 (291)
T 1h6t_A 117 LSLEHNGISDI--------------------------------NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLS 162 (291)
T ss_dssp EECTTSCCCCC--------------------------------GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEE
T ss_pred EECCCCcCCCC--------------------------------hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEE
Confidence 55555555432 1233445555555555555533 3455555555566
Q ss_pred CCCCccceeCCCcCCCCCCCcEEECcCccccccCCCcccCCCcCceeecCCccccc
Q 008876 463 LSYNKLGYVLPGSLANESSLETLKLQNNRFTGRIPSEYLKLKKLKELDLSHNLLVG 518 (550)
Q Consensus 463 l~~n~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~ 518 (550)
+++|.+++..+ +..+++|++|++++|.+.. ++ .+..+++|+.|++++|++..
T Consensus 163 L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~-l~-~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 163 LEDNQISDIVP--LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp CCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEEEEEEC
T ss_pred ccCCccccchh--hcCCCccCEEECCCCcCCC-Ch-hhccCCCCCEEECcCCcccC
Confidence 65555554432 5555556666666555553 22 25555566666666655543
No 104
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.69 E-value=1.8e-16 Score=147.64 Aligned_cols=173 Identities=23% Similarity=0.346 Sum_probs=118.4
Q ss_pred ccCCCCCcEEeCCCccCCCCCchhhhhccCCcEEEcCCCcCCCcccccccCCcccchhhccccccCccCchhccCCCCCC
Q 008876 34 IGCLQNLKKLYLYGNKLSGSVPESISKLLKLEELHLHENRLSGTLSSSLGNLKNINQLLMHTNQFTGVIPDSFTNLTNLV 113 (550)
Q Consensus 34 l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~ 113 (550)
+..+++|++|+++++.++.. + .+..+++|++|++++|.+....+ +..+++|++|++++|.+.. . ..+..+++|+
T Consensus 42 ~~~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~ 115 (291)
T 1h6t_A 42 QNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-L-SSLKDLKKLK 115 (291)
T ss_dssp HHHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-G-GGGTTCTTCC
T ss_pred hhhcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-C-hhhccCCCCC
Confidence 45667777777777776633 2 36667777777777777664333 6677777777777777663 2 3467777777
Q ss_pred EEEcccccCccccchhhcCCCCcCeEeccCccccCcCCcccCCCCCCCEEEccCCcccccccCCCCCCCCCCccEEEcCC
Q 008876 114 RLDLHCNYLNGYIPEKIGELQLLEQLDFSNNLLRGKLPPSLCNLTVISVLYLDNNKLEGAIPFPSSPGQMPSLGFLRLQD 193 (550)
Q Consensus 114 ~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 193 (550)
+|++++|.+... ..+..+++|+.|++++|.+... ..+..+++|+.|++++|.+.+..+ +..+++|+.|++++
T Consensus 116 ~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~----l~~l~~L~~L~L~~ 187 (291)
T 1h6t_A 116 SLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP----LAGLTKLQNLYLSK 187 (291)
T ss_dssp EEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG----GTTCTTCCEEECCS
T ss_pred EEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh----hcCCCccCEEECCC
Confidence 777777777643 4566777777777777776633 456677777777777777665432 66777888888888
Q ss_pred CcccccCCCCccCCCCCcEEEcccCcccC
Q 008876 194 NNLTGKIPPTFGYLASLRRVSLANNKLEG 222 (550)
Q Consensus 194 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 222 (550)
|.+... ..+..+++|+.|++++|.+..
T Consensus 188 N~i~~l--~~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 188 NHISDL--RALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp SCCCBC--GGGTTCTTCSEEEEEEEEEEC
T ss_pred CcCCCC--hhhccCCCCCEEECcCCcccC
Confidence 877643 236778888888888887764
No 105
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.68 E-value=4.6e-16 Score=138.43 Aligned_cols=151 Identities=21% Similarity=0.254 Sum_probs=80.3
Q ss_pred cEEEcccccCCCCchhhhhccccccEEEccCCeeeccCCccccCCCCCcEEEccCCccccccccccccCCCCCCCCeEEE
Q 008876 333 QELDLSVNHLSGSIPAWIGSLTQLYSLNLSRNSLVSSIPETITNLQDLVLLDLHSNKLTGSISQVFKIGQRFPDGSLTYI 412 (550)
Q Consensus 333 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~L~~L 412 (550)
+.++++++.++.. +..+ .++++.|++++|.+....+..+..+++|++|++++|+++...+..+... ++|++|
T Consensus 14 ~~v~c~~~~l~~i-P~~l--~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l-----~~L~~L 85 (220)
T 2v9t_B 14 NIVDCRGKGLTEI-PTNL--PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGL-----RSLNSL 85 (220)
T ss_dssp TEEECTTSCCSSC-CSSC--CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTC-----SSCCEE
T ss_pred CEEEcCCCCcCcC-CCcc--CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCC-----cCCCEE
Confidence 4567777666533 2222 2567777777777776666667777777777777777765544444322 445555
Q ss_pred eccCCCCCCCCCCCCCCCcccccEEeccCCcccCcCCcccccccccceeeCCCCccceeCCCcCCCCCCCcEEECcCccc
Q 008876 413 DLSDNGFSSGIELTGGGGQTGIRFLNLSRNVLEGQIPVSVGRLRSLRSLDLSYNKLGYVLPGSLANESSLETLKLQNNRF 492 (550)
Q Consensus 413 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~~ 492 (550)
++++|.+.. ++...+..+++|++|++++|.+++..+..|..+++|+.|++++|.++...+..+..+++|++|++++|++
T Consensus 86 ~Ls~N~l~~-l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 86 VLYGNKITE-LPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPF 164 (220)
T ss_dssp ECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred ECCCCcCCc-cCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCc
Confidence 555554442 2222344444444444444444444444444444444444444444444444444444444444444444
No 106
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.68 E-value=6e-16 Score=137.68 Aligned_cols=155 Identities=25% Similarity=0.266 Sum_probs=104.3
Q ss_pred cEEEcccccCCCCchhhhhccccccEEEccCCeeeccCC-ccccCCCCCcEEEccCCccccccccccccCCCCCCCCeEE
Q 008876 333 QELDLSVNHLSGSIPAWIGSLTQLYSLNLSRNSLVSSIP-ETITNLQDLVLLDLHSNKLTGSISQVFKIGQRFPDGSLTY 411 (550)
Q Consensus 333 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~L~~ 411 (550)
+.++++++.++.. +..+ .+.++.|++++|.+....+ ..+..+++|++|++++|+++....
T Consensus 14 ~~l~~s~n~l~~i-P~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~---------------- 74 (220)
T 2v70_A 14 TTVDCSNQKLNKI-PEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEE---------------- 74 (220)
T ss_dssp TEEECCSSCCSSC-CSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECT----------------
T ss_pred CEeEeCCCCcccC-ccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECH----------------
Confidence 4566666665532 2211 2345566666666655432 335556666666666665543322
Q ss_pred EeccCCCCCCCCCCCCCCCcccccEEeccCCcccCcCCcccccccccceeeCCCCccceeCCCcCCCCCCCcEEECcCcc
Q 008876 412 IDLSDNGFSSGIELTGGGGQTGIRFLNLSRNVLEGQIPVSVGRLRSLRSLDLSYNKLGYVLPGSLANESSLETLKLQNNR 491 (550)
Q Consensus 412 L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~ 491 (550)
..+..+++|++|++++|.+++..+..|.++++|++|++++|.++...+..+.++++|++|++++|.
T Consensus 75 --------------~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~ 140 (220)
T 2v70_A 75 --------------GAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQ 140 (220)
T ss_dssp --------------TTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSC
T ss_pred --------------HHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCc
Confidence 245566777777888777777767777888888888888888887777778888888888888888
Q ss_pred ccccCCCcccCCCcCceeecCCccccccC
Q 008876 492 FTGRIPSEYLKLKKLKELDLSHNLLVGEI 520 (550)
Q Consensus 492 ~~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 520 (550)
+....|..+..+++|++|++++|++.+.-
T Consensus 141 l~~~~~~~~~~l~~L~~L~L~~N~l~c~c 169 (220)
T 2v70_A 141 ITTVAPGAFDTLHSLSTLNLLANPFNCNC 169 (220)
T ss_dssp CCCBCTTTTTTCTTCCEEECCSCCEECSG
T ss_pred CCEECHHHhcCCCCCCEEEecCcCCcCCC
Confidence 88777777888888888888888877543
No 107
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.68 E-value=4.4e-17 Score=155.08 Aligned_cols=299 Identities=11% Similarity=0.069 Sum_probs=142.8
Q ss_pred CCCCCccccc--cCcccEeeCCCCCCCCcCCCCCccC-CCCCcEEeCCCccCCCCCchhhhhccCCcEEEcCCCcCCCcc
Q 008876 2 KGSLSPSISL--LTSLEVLDLGGLVDLTGIIPPSIGC-LQNLKKLYLYGNKLSGSVPESISKLLKLEELHLHENRLSGTL 78 (550)
Q Consensus 2 ~~~~~~~~~~--~~~L~~L~l~~~~~~~~~~~~~l~~-l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 78 (550)
+|.++..+.. +++++.|.+++. +...-.+.+.. +++|++|+++++++.. ....-..++.++.+.+..+. +.
T Consensus 12 ~g~l~~~l~~~~~~~l~~L~l~g~--i~~~~~~~l~~~l~~L~~LdLs~n~i~~-~~~~~~~~~~~~~~~~~~~~---I~ 85 (329)
T 3sb4_A 12 PGTLISMMTEEEANSITHLTLTGK--LNAEDFRHLRDEFPSLKVLDISNAEIKM-YSGKAGTYPNGKFYIYMANF---VP 85 (329)
T ss_dssp TTCGGGGSCHHHHHHCSEEEEEEE--ECHHHHHHHHHSCTTCCEEEEEEEEECC-EEESSSSSGGGCCEEECTTE---EC
T ss_pred CCcHHhhccchhhCceeEEEEecc--ccHHHHHHHHHhhccCeEEecCcceeEE-ecCccccccccccccccccc---cC
Confidence 4555555544 677788887762 22111223333 6778888888777651 11111122224445544442 33
Q ss_pred cccccC--------CcccchhhccccccCccCchhccCCCCCCEEEcccccCccccchhhcCCCCcCeEeccCccc----
Q 008876 79 SSSLGN--------LKNINQLLMHTNQFTGVIPDSFTNLTNLVRLDLHCNYLNGYIPEKIGELQLLEQLDFSNNLL---- 146 (550)
Q Consensus 79 ~~~~~~--------l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~---- 146 (550)
..+|.. |++|+.+.+.+ .+..+...+|.+|++|+.+++..+.+..+.+.+|..+.++..+.......
T Consensus 86 ~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~ 164 (329)
T 3sb4_A 86 AYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFK 164 (329)
T ss_dssp TTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTS
T ss_pred HHHhcccccccccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcc
Confidence 455666 88888888888 67767777788888888888888877767777788777777776654321
Q ss_pred cCcCCcccCCCCCCC-EEEccCCcccccccCCCCCCCCCCccEEEcCCCcccccCCCCccCCCCCcEEEcccCcccCcch
Q 008876 147 RGKLPPSLCNLTVIS-VLYLDNNKLEGAIPFPSSPGQMPSLGFLRLQDNNLTGKIPPTFGYLASLRRVSLANNKLEGAIP 225 (550)
Q Consensus 147 ~~~~~~~l~~~~~L~-~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 225 (550)
.......+..+..|+ .+.+..........+ .......+++.+.+.+.-...........+++|+++++.++.+.....
T Consensus 165 ~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~-~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~ 243 (329)
T 3sb4_A 165 NRWEHFAFIEGEPLETTIQVGAMGKLEDEIM-KAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPD 243 (329)
T ss_dssp TTTTTSCEEESCCCEEEEEECTTCCHHHHHH-HTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECT
T ss_pred ccccccccccccccceeEEecCCCcHHHHHh-hcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecH
Confidence 111222344444554 333322111000000 000011222223222221000000000113455555555544444444
Q ss_pred hhccCCCCCcEEEecCccccCCCcccccCCCccc-EEEccCCcccCCCCCcccCCCCccEEEccCCcccCCccchhcccC
Q 008876 226 TSLGNLQDLTELYLNGNQLSGQIPKSISQLSQLI-FLSISRNQIEGPLPSGMFSLQNLQTLDLSFNLLNLSSIPMWMAEL 304 (550)
Q Consensus 226 ~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~-~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 304 (550)
..|.++++|+++++..+ +......+|.+|++|+ .+.+.+ .++.....+|.++++|+.++++.+.+... -...|..+
T Consensus 244 ~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I-~~~aF~~~ 320 (329)
T 3sb4_A 244 FTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTL-GDELFGNG 320 (329)
T ss_dssp TTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEE-CTTTTCTT
T ss_pred hhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCcc-chhhhcCC
Confidence 44555555555555444 3333444445555555 555544 33323334444455555555544432211 12234445
Q ss_pred CCCcEEE
Q 008876 305 PSLSRVY 311 (550)
Q Consensus 305 ~~L~~L~ 311 (550)
++|+.++
T Consensus 321 ~~L~~ly 327 (329)
T 3sb4_A 321 VPSKLIY 327 (329)
T ss_dssp CCCCEEE
T ss_pred cchhhhc
Confidence 5555443
No 108
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.66 E-value=4.4e-16 Score=135.41 Aligned_cols=130 Identities=22% Similarity=0.210 Sum_probs=64.4
Q ss_pred cEEEccCCccccccccccccCCCCCCCCeEEEeccCCCCCCCCCCCCCCCcccccEEeccCCcccCcCCcccccccccce
Q 008876 381 VLLDLHSNKLTGSISQVFKIGQRFPDGSLTYIDLSDNGFSSGIELTGGGGQTGIRFLNLSRNVLEGQIPVSVGRLRSLRS 460 (550)
Q Consensus 381 ~~L~l~~~~i~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~ 460 (550)
+.+++++++++..+.... ..+++|++++|.+.+......+..+++|++|++++|.+++..+..|.++++|++
T Consensus 11 ~~l~~s~~~l~~ip~~~~--------~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 82 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIP--------LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQE 82 (192)
T ss_dssp TEEECTTSCCSSCCSCCC--------TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCE
T ss_pred CEEEcCCCCcCcCccCCC--------CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCE
Confidence 566666666654432211 245555555555543322223444555555555555555444445555555555
Q ss_pred eeCCCCccceeCCCcCCCCCCCcEEECcCccccccCCCcccCCCcCceeecCCccccc
Q 008876 461 LDLSYNKLGYVLPGSLANESSLETLKLQNNRFTGRIPSEYLKLKKLKELDLSHNLLVG 518 (550)
Q Consensus 461 L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~ 518 (550)
|++++|+++...+..+.++++|++|++++|.+.+..|..+..+++|++|++++|++.+
T Consensus 83 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c 140 (192)
T 1w8a_A 83 LQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNC 140 (192)
T ss_dssp EECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred EECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccC
Confidence 5555555554444445455555555555555554444445555555555555555443
No 109
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.66 E-value=7.5e-16 Score=157.32 Aligned_cols=173 Identities=28% Similarity=0.434 Sum_probs=106.4
Q ss_pred ccccCcccEeeCCCCCCCCcCCCCCccCCCCCcEEeCCCccCCCCCchhhhhccCCcEEEcCCCcCCCcccccccCCccc
Q 008876 9 ISLLTSLEVLDLGGLVDLTGIIPPSIGCLQNLKKLYLYGNKLSGSVPESISKLLKLEELHLHENRLSGTLSSSLGNLKNI 88 (550)
Q Consensus 9 ~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L 88 (550)
+..+++|+.|++++| .+. .++ .+..+++|++|++++|.+.+..+ +..+++|+.|+|++|.+.. . ..+..+++|
T Consensus 39 ~~~L~~L~~L~l~~n-~i~-~l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L 111 (605)
T 1m9s_A 39 QNELNSIDQIIANNS-DIK-SVQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-L-SSLKDLKKL 111 (605)
T ss_dssp HHHHTTCCCCBCTTC-CCC-CCT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-C-TTSTTCTTC
T ss_pred hhcCCCCCEEECcCC-CCC-CCh-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-C-hhhccCCCC
Confidence 455666777777663 222 233 46667777777777776664332 6667777777777766652 2 246666777
Q ss_pred chhhccccccCccCchhccCCCCCCEEEcccccCccccchhhcCCCCcCeEeccCccccCcCCcccCCCCCCCEEEccCC
Q 008876 89 NQLLMHTNQFTGVIPDSFTNLTNLVRLDLHCNYLNGYIPEKIGELQLLEQLDFSNNLLRGKLPPSLCNLTVISVLYLDNN 168 (550)
Q Consensus 89 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 168 (550)
+.|++++|.+... ..+..+++|+.|++++|.+... ..+..+++|+.|++++|.+.+..+ +..+++|+.|++++|
T Consensus 112 ~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N 185 (605)
T 1m9s_A 112 KSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKN 185 (605)
T ss_dssp CEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSS
T ss_pred CEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCC
Confidence 7777777666532 3466667777777776666643 456666777777777666664333 666666677777666
Q ss_pred cccccccCCCCCCCCCCccEEEcCCCcccc
Q 008876 169 KLEGAIPFPSSPGQMPSLGFLRLQDNNLTG 198 (550)
Q Consensus 169 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 198 (550)
.+.+. ..+..+++|+.|++++|.+..
T Consensus 186 ~i~~l----~~l~~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 186 HISDL----RALAGLKNLDVLELFSQECLN 211 (605)
T ss_dssp CCCBC----GGGTTCTTCSEEECCSEEEEC
T ss_pred CCCCC----hHHccCCCCCEEEccCCcCcC
Confidence 66543 235566666666666666553
No 110
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.66 E-value=3.8e-16 Score=136.67 Aligned_cols=154 Identities=17% Similarity=0.225 Sum_probs=115.6
Q ss_pred ccCCCCCcEEeCCCccCCCCCchhhhhccCCcEEEcCCCcCCCcccccccCCcccchhhccccccCccCchhccCCCCCC
Q 008876 34 IGCLQNLKKLYLYGNKLSGSVPESISKLLKLEELHLHENRLSGTLSSSLGNLKNINQLLMHTNQFTGVIPDSFTNLTNLV 113 (550)
Q Consensus 34 l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~ 113 (550)
...+++|++|+++++.++ .++ .+..+++|++|++++|.+. .+..+..+++|++|++++|.+....+..+..+++|+
T Consensus 40 ~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 115 (197)
T 4ezg_A 40 EAQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLT 115 (197)
T ss_dssp HHHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCC
T ss_pred hhhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCC
Confidence 467778888888888877 445 5777888888888888654 234677788888888888888766677788888888
Q ss_pred EEEcccccCccccchhhcCCCCcCeEeccCcc-ccCcCCcccCCCCCCCEEEccCCcccccccCCCCCCCCCCccEEEcC
Q 008876 114 RLDLHCNYLNGYIPEKIGELQLLEQLDFSNNL-LRGKLPPSLCNLTVISVLYLDNNKLEGAIPFPSSPGQMPSLGFLRLQ 192 (550)
Q Consensus 114 ~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~ 192 (550)
+|++++|.+.+..+..+..+++|++|++++|. +. ..+ .+..+++|+.|++++|.+.+. ..+..+++|+.|+++
T Consensus 116 ~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~~----~~l~~l~~L~~L~l~ 189 (197)
T 4ezg_A 116 LLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHDY----RGIEDFPKLNQLYAF 189 (197)
T ss_dssp EEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCCC----TTGGGCSSCCEEEEC
T ss_pred EEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcCh----HHhccCCCCCEEEee
Confidence 88888888876667778888888888888887 55 334 577888888888888877643 256778888888888
Q ss_pred CCccc
Q 008876 193 DNNLT 197 (550)
Q Consensus 193 ~~~~~ 197 (550)
+|.+.
T Consensus 190 ~N~i~ 194 (197)
T 4ezg_A 190 SQTIG 194 (197)
T ss_dssp BC---
T ss_pred CcccC
Confidence 88765
No 111
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.66 E-value=5e-16 Score=134.92 Aligned_cols=130 Identities=24% Similarity=0.288 Sum_probs=102.2
Q ss_pred EEeccCCCCCCCCCCCCCCCcccccEEeccCCcccCcCCcccccccccceeeCCCCccceeCCCcCCCCCCCcEEECcCc
Q 008876 411 YIDLSDNGFSSGIELTGGGGQTGIRFLNLSRNVLEGQIPVSVGRLRSLRSLDLSYNKLGYVLPGSLANESSLETLKLQNN 490 (550)
Q Consensus 411 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~ 490 (550)
.++++++.+.. ++. .-++++++|++++|.++ .++..+.++++|+.|++++|.++.+.+..|.++++|++|++++|
T Consensus 14 ~l~~~~~~l~~-ip~---~~~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 14 VVRCSNKGLKV-LPK---GIPRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp EEECTTSCCSS-CCS---CCCTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred EEEcCCCCCCc-CCC---CCCCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 44555555443 221 12356788888888887 45678888999999999999999888888889999999999999
Q ss_pred cccccCCCcccCCCcCceeecCCccccccCCCCC-CCCCccccCCCCCCCCCCCCC
Q 008876 491 RFTGRIPSEYLKLKKLKELDLSHNLLVGEIPAGK-PLSDFPESSFSGNRGLCGKPL 545 (550)
Q Consensus 491 ~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~ 545 (550)
.+....+..|..+++|+.|++++|.+....+..+ .+++++++++++|||.|+|++
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~c~l 144 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCDCNM 144 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEECSGGG
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeecCCcC
Confidence 9997777788899999999999999986544444 378899999999999999975
No 112
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.65 E-value=1.6e-15 Score=153.02 Aligned_cols=160 Identities=27% Similarity=0.329 Sum_probs=86.5
Q ss_pred ccEEEcccccCCCCchhhhhccccccEEEccCCeeeccCCccccCCCCCcEEEccCCccccccccccccCCCCCCCCeEE
Q 008876 332 LQELDLSVNHLSGSIPAWIGSLTQLYSLNLSRNSLVSSIPETITNLQDLVLLDLHSNKLTGSISQVFKIGQRFPDGSLTY 411 (550)
Q Consensus 332 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~L~~ 411 (550)
|+.|++++|.++.. + ..+++|+.|++++|.++.... +.. +|++|++++|+++..+. . .++|++
T Consensus 82 L~~L~Ls~N~l~~i-p---~~l~~L~~L~Ls~N~l~~ip~--l~~--~L~~L~Ls~N~l~~lp~-~--------l~~L~~ 144 (571)
T 3cvr_A 82 ITVLEITQNALISL-P---ELPASLEYLDACDNRLSTLPE--LPA--SLKHLDVDNNQLTMLPE-L--------PALLEY 144 (571)
T ss_dssp CSEEECCSSCCSCC-C---CCCTTCCEEECCSSCCSCCCC--CCT--TCCEEECCSSCCSCCCC-C--------CTTCCE
T ss_pred CCEEECcCCCCccc-c---cccCCCCEEEccCCCCCCcch--hhc--CCCEEECCCCcCCCCCC-c--------CccccE
Confidence 55555555554422 2 234555555555555554222 222 55555555555554322 0 145666
Q ss_pred EeccCCCCCCCCCCCCCCCcccccEEeccCCcccCcCCcccccccccceeeCCCCccceeCCCcCCCCCCC-------cE
Q 008876 412 IDLSDNGFSSGIELTGGGGQTGIRFLNLSRNVLEGQIPVSVGRLRSLRSLDLSYNKLGYVLPGSLANESSL-------ET 484 (550)
Q Consensus 412 L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L-------~~ 484 (550)
|++++|.+++ ++. .+++|++|++++|.+++ ++. +. ++|+.|++++|.|+ .+|. +.. +| ++
T Consensus 145 L~Ls~N~l~~-lp~----~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~ 211 (571)
T 3cvr_A 145 INADNNQLTM-LPE----LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIF 211 (571)
T ss_dssp EECCSSCCSC-CCC----CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCCC-CC----------CCEE
T ss_pred EeCCCCccCc-CCC----cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceE
Confidence 6666665554 221 45566666666666664 333 43 66777777777666 3333 433 55 77
Q ss_pred EECcCccccccCCCcccCCCcCceeecCCccccccCCC
Q 008876 485 LKLQNNRFTGRIPSEYLKLKKLKELDLSHNLLVGEIPA 522 (550)
Q Consensus 485 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~ 522 (550)
|++++|.++ .+|..+..+++|+.|++++|++.+.+|.
T Consensus 212 L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~ 248 (571)
T 3cvr_A 212 FRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRE 248 (571)
T ss_dssp EECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHH
T ss_pred EecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHH
Confidence 777777776 4566666677777777777777665553
No 113
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.65 E-value=2.4e-15 Score=134.78 Aligned_cols=152 Identities=26% Similarity=0.255 Sum_probs=86.0
Q ss_pred ccEEEcccccCCCCchhhhhccccccEEEccCCeeeccCCccccCCCCCcEEEccCCccccccccccccCCCCCCCCeEE
Q 008876 332 LQELDLSVNHLSGSIPAWIGSLTQLYSLNLSRNSLVSSIPETITNLQDLVLLDLHSNKLTGSISQVFKIGQRFPDGSLTY 411 (550)
Q Consensus 332 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~L~~ 411 (550)
.+.++.+++.++.. +..+ .++|+.|++++|.+....+..+..+++|++|++++|++.......+... ++|++
T Consensus 21 ~~~v~c~~~~l~~i-p~~~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l-----~~L~~ 92 (229)
T 3e6j_A 21 GTTVDCRSKRHASV-PAGI--PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSL-----TQLTV 92 (229)
T ss_dssp TTEEECTTSCCSSC-CSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC-----TTCCE
T ss_pred CCEeEccCCCcCcc-CCCC--CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccC-----CCcCE
Confidence 56677777666533 2222 2677777777777776666667777777777777777765544433322 45555
Q ss_pred EeccCCCCCCCCCCCCCCCcccccEEeccCCcccCcCCcccccccccceeeCCCCccceeCCCcCCCCCCCcEEECcCcc
Q 008876 412 IDLSDNGFSSGIELTGGGGQTGIRFLNLSRNVLEGQIPVSVGRLRSLRSLDLSYNKLGYVLPGSLANESSLETLKLQNNR 491 (550)
Q Consensus 412 L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~ 491 (550)
|++++|.+.. +....+..+++|++|++++|.++ .++..+..+++|++|++++|+++...+..+..+++|++|++++|+
T Consensus 93 L~Ls~N~l~~-l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 93 LDLGTNQLTV-LPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNP 170 (229)
T ss_dssp EECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred EECCCCcCCc-cChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCC
Confidence 5555555543 22223445555555555555555 334445555555555555555554444445555555555555555
Q ss_pred cc
Q 008876 492 FT 493 (550)
Q Consensus 492 ~~ 493 (550)
+.
T Consensus 171 ~~ 172 (229)
T 3e6j_A 171 WD 172 (229)
T ss_dssp BC
T ss_pred cc
Confidence 44
No 114
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.65 E-value=1.5e-15 Score=155.08 Aligned_cols=172 Identities=23% Similarity=0.243 Sum_probs=88.6
Q ss_pred cccCCCCcEEEeecccccccCCccccCCCCCccEEEcccccCCCCchhhhhccccccEEEccCCeeeccCCccccCCCCC
Q 008876 301 MAELPSLSRVYLAGCGIKGKIPEFFRTTPSPLQELDLSVNHLSGSIPAWIGSLTQLYSLNLSRNSLVSSIPETITNLQDL 380 (550)
Q Consensus 301 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L 380 (550)
...+++|+.|.++++.+.... .+..+ ++|+.|++++|.+.+..+ +..+++|+.|++++|.+... ..+..+++|
T Consensus 39 ~~~L~~L~~L~l~~n~i~~l~--~l~~l-~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L 111 (605)
T 1m9s_A 39 QNELNSIDQIIANNSDIKSVQ--GIQYL-PNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDL--SSLKDLKKL 111 (605)
T ss_dssp HHHHTTCCCCBCTTCCCCCCT--TGGGC-TTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCC--TTSTTCTTC
T ss_pred hhcCCCCCEEECcCCCCCCCh--HHccC-CCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCCC--hhhccCCCC
Confidence 345666777777776655432 22222 336777777666664433 56666666666666666543 245566666
Q ss_pred cEEEccCCccccccccccccCCCCCCCCeEEEeccCCCCCCCCCCCCCCCcccccEEeccCCcccCcCCcccccccccce
Q 008876 381 VLLDLHSNKLTGSISQVFKIGQRFPDGSLTYIDLSDNGFSSGIELTGGGGQTGIRFLNLSRNVLEGQIPVSVGRLRSLRS 460 (550)
Q Consensus 381 ~~L~l~~~~i~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~ 460 (550)
++|++++|++.... .+... ++|+.|++++|.+.+. ..+..+++|+.|++++|.+++..+ +..+++|+.
T Consensus 112 ~~L~Ls~N~l~~l~--~l~~l-----~~L~~L~Ls~N~l~~l---~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~ 179 (605)
T 1m9s_A 112 KSLSLEHNGISDIN--GLVHL-----PQLESLYLGNNKITDI---TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQN 179 (605)
T ss_dssp CEEECTTSCCCCCG--GGGGC-----TTCSEEECCSSCCCCC---GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCE
T ss_pred CEEEecCCCCCCCc--cccCC-----CccCEEECCCCccCCc---hhhcccCCCCEEECcCCcCCCchh--hccCCCCCE
Confidence 66666666665431 11111 4455555555554432 233444455555555555443322 444455555
Q ss_pred eeCCCCccceeCCCcCCCCCCCcEEECcCcccc
Q 008876 461 LDLSYNKLGYVLPGSLANESSLETLKLQNNRFT 493 (550)
Q Consensus 461 L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~~~ 493 (550)
|+|++|.+++. ..+..+++|+.|+|++|++.
T Consensus 180 L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~ 210 (605)
T 1m9s_A 180 LYLSKNHISDL--RALAGLKNLDVLELFSQECL 210 (605)
T ss_dssp EECCSSCCCBC--GGGTTCTTCSEEECCSEEEE
T ss_pred EECcCCCCCCC--hHHccCCCCCEEEccCCcCc
Confidence 55555544432 23444445555555555444
No 115
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.64 E-value=5.8e-16 Score=135.48 Aligned_cols=154 Identities=16% Similarity=0.208 Sum_probs=115.1
Q ss_pred hhhccCCcEEEcCCCcCCCcccccccCCcccchhhccccccCccCchhccCCCCCCEEEcccccCccccchhhcCCCCcC
Q 008876 58 ISKLLKLEELHLHENRLSGTLSSSLGNLKNINQLLMHTNQFTGVIPDSFTNLTNLVRLDLHCNYLNGYIPEKIGELQLLE 137 (550)
Q Consensus 58 ~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~ 137 (550)
...+++|++|+++++.+. ..+ .+..+++|++|++++|.+.. +..+..+++|++|++++|.+....+..+..+++|+
T Consensus 40 ~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 115 (197)
T 4ezg_A 40 EAQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLT 115 (197)
T ss_dssp HHHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCSC--CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCC
T ss_pred hhhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCCc--chhhhcCCCCCEEEeECCccCcccChhhcCCCCCC
Confidence 356788888888888776 434 57788888888888886652 24677888888888888888766677788888888
Q ss_pred eEeccCccccCcCCcccCCCCCCCEEEccCCc-ccccccCCCCCCCCCCccEEEcCCCcccccCCCCccCCCCCcEEEcc
Q 008876 138 QLDFSNNLLRGKLPPSLCNLTVISVLYLDNNK-LEGAIPFPSSPGQMPSLGFLRLQDNNLTGKIPPTFGYLASLRRVSLA 216 (550)
Q Consensus 138 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~ 216 (550)
+|++++|.+.+..+..+..+++|++|++++|. +... ..+..+++|+.|++++|.+... + .+..+++|++|+++
T Consensus 116 ~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~----~~l~~l~~L~~L~l~~n~i~~~-~-~l~~l~~L~~L~l~ 189 (197)
T 4ezg_A 116 LLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI----MPLKTLPELKSLNIQFDGVHDY-R-GIEDFPKLNQLYAF 189 (197)
T ss_dssp EEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCC----GGGGGCSSCCEEECTTBCCCCC-T-TGGGCSSCCEEEEC
T ss_pred EEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcccc----HhhcCCCCCCEEECCCCCCcCh-H-HhccCCCCCEEEee
Confidence 88888888876667777888888888888886 4332 2467788888888888887743 2 57778888888888
Q ss_pred cCccc
Q 008876 217 NNKLE 221 (550)
Q Consensus 217 ~~~~~ 221 (550)
+|.+.
T Consensus 190 ~N~i~ 194 (197)
T 4ezg_A 190 SQTIG 194 (197)
T ss_dssp BC---
T ss_pred CcccC
Confidence 88765
No 116
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.64 E-value=5.2e-16 Score=142.16 Aligned_cols=167 Identities=22% Similarity=0.209 Sum_probs=89.5
Q ss_pred ccEEEcccccCCCCchhhhhccccccEEEccCCeeeccCCccccCCCCCcEEEccCCccccccccccccCCCCCCCCeEE
Q 008876 332 LQELDLSVNHLSGSIPAWIGSLTQLYSLNLSRNSLVSSIPETITNLQDLVLLDLHSNKLTGSISQVFKIGQRFPDGSLTY 411 (550)
Q Consensus 332 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~L~~ 411 (550)
+..++++++.+.+.. .+..+++|+.|++++|.+.... .+..+++|++|++++|+++.... +... ++|++
T Consensus 21 l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~L~~N~i~~~~~--l~~l-----~~L~~ 89 (263)
T 1xeu_A 21 AVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQSLA--GMQFFTNLKELHLSHNQISDLSP--LKDL-----TKLEE 89 (263)
T ss_dssp HHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG--GTTC-----SSCCE
T ss_pred HHHHHhcCCCccccc--chhhcCcCcEEECcCCCcccch--HHhhCCCCCEEECCCCccCCChh--hccC-----CCCCE
Confidence 334444444444322 3445555555555555554332 34455555666665555554433 2211 45556
Q ss_pred EeccCCCCCCCCCCCCCCCcccccEEeccCCcccCcCCcccccccccceeeCCCCccceeCCCcCCCCCCCcEEECcCcc
Q 008876 412 IDLSDNGFSSGIELTGGGGQTGIRFLNLSRNVLEGQIPVSVGRLRSLRSLDLSYNKLGYVLPGSLANESSLETLKLQNNR 491 (550)
Q Consensus 412 L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~ 491 (550)
|++++|.+.+... +.. ++|++|++++|.+++. ..+..+++|+.|++++|++++. ..+..+++|++|++++|.
T Consensus 90 L~L~~N~l~~l~~---~~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~--~~l~~l~~L~~L~L~~N~ 161 (263)
T 1xeu_A 90 LSVNRNRLKNLNG---IPS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI--VMLGFLSKLEVLDLHGNE 161 (263)
T ss_dssp EECCSSCCSCCTT---CCC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC--GGGGGCTTCCEEECTTSC
T ss_pred EECCCCccCCcCc---ccc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC--hHHccCCCCCEEECCCCc
Confidence 6666555544211 111 5666666666666532 2456666666666666666644 245556666666666666
Q ss_pred ccccCCCcccCCCcCceeecCCcccccc
Q 008876 492 FTGRIPSEYLKLKKLKELDLSHNLLVGE 519 (550)
Q Consensus 492 ~~~~~~~~~~~l~~L~~L~l~~n~~~~~ 519 (550)
+.+. ..+..+++|+.|++++|++...
T Consensus 162 i~~~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 162 ITNT--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp CCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred Ccch--HHhccCCCCCEEeCCCCcccCC
Confidence 6644 4456666666666666666543
No 117
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.64 E-value=6.3e-16 Score=149.01 Aligned_cols=157 Identities=27% Similarity=0.202 Sum_probs=91.1
Q ss_pred CccEEEcccccCCCCchhhhh-ccccccEEEccCCeeeccCCccccCCCCCcEEEccCCccccccccccccCCCCCCCCe
Q 008876 331 PLQELDLSVNHLSGSIPAWIG-SLTQLYSLNLSRNSLVSSIPETITNLQDLVLLDLHSNKLTGSISQVFKIGQRFPDGSL 409 (550)
Q Consensus 331 ~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~L 409 (550)
.++.|++++|.++......+. .+++|+.|++++|.+....+..+..+++|++|++++|+++.....
T Consensus 40 ~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~------------- 106 (361)
T 2xot_A 40 YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEF------------- 106 (361)
T ss_dssp TCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTT-------------
T ss_pred CCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHH-------------
Confidence 356666666666554444444 556666666666666555555555566666666666655433332
Q ss_pred EEEeccCCCCCCCCCCCCCCCcccccEEeccCCcccCcCCcccccccccceeeCCCCccceeCCCcC---CCCCCCcEEE
Q 008876 410 TYIDLSDNGFSSGIELTGGGGQTGIRFLNLSRNVLEGQIPVSVGRLRSLRSLDLSYNKLGYVLPGSL---ANESSLETLK 486 (550)
Q Consensus 410 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l---~~l~~L~~L~ 486 (550)
.+..+++|++|++++|.++...+..|.++++|++|+|++|.++.+.+..+ ..+++|+.|+
T Consensus 107 -----------------~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~ 169 (361)
T 2xot_A 107 -----------------LFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLD 169 (361)
T ss_dssp -----------------TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEE
T ss_pred -----------------HhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEE
Confidence 34455666666666666665556666666666666666666665444334 3466666666
Q ss_pred CcCccccccCCCcccCCCc--CceeecCCcccc
Q 008876 487 LQNNRFTGRIPSEYLKLKK--LKELDLSHNLLV 517 (550)
Q Consensus 487 l~~~~~~~~~~~~~~~l~~--L~~L~l~~n~~~ 517 (550)
+++|.+....+..+..+++ ++.|++++|++.
T Consensus 170 L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 170 LSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp CCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred CCCCCCCccCHHHhhhccHhhcceEEecCCCcc
Confidence 6666666443344555555 366666666654
No 118
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.62 E-value=7.1e-16 Score=134.08 Aligned_cols=174 Identities=20% Similarity=0.194 Sum_probs=117.3
Q ss_pred cEEEccCCeeeccCCccccCCCCCcEEEccCCcccccccc-ccccCCCCCCCCeEEEeccCCCCCCCCCCCCCCCccccc
Q 008876 357 YSLNLSRNSLVSSIPETITNLQDLVLLDLHSNKLTGSISQ-VFKIGQRFPDGSLTYIDLSDNGFSSGIELTGGGGQTGIR 435 (550)
Q Consensus 357 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~ 435 (550)
+.++++++.+...+. .+ ..++++|++++|+++..... .+... +.|++|++++|.+.+..+ ..+..+++|+
T Consensus 11 ~~l~~s~~~l~~ip~-~~--~~~l~~L~l~~n~i~~~~~~~~~~~l-----~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~ 81 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPR-DI--PLHTTELLLNDNELGRISSDGLFGRL-----PHLVKLELKRNQLTGIEP-NAFEGASHIQ 81 (192)
T ss_dssp TEEECTTSCCSSCCS-CC--CTTCSEEECCSCCCCSBCCSCSGGGC-----TTCCEEECCSSCCCCBCT-TTTTTCTTCC
T ss_pred CEEEcCCCCcCcCcc-CC--CCCCCEEECCCCcCCccCCccccccC-----CCCCEEECCCCCCCCcCH-hHcCCcccCC
Confidence 678888888764433 32 23788888888888766653 24333 688888888888876433 3677888888
Q ss_pred EEeccCCcccCcCCcccccccccceeeCCCCccceeCCCcCCCCCCCcEEECcCccccccCCCcccCC-CcCceeecCCc
Q 008876 436 FLNLSRNVLEGQIPVSVGRLRSLRSLDLSYNKLGYVLPGSLANESSLETLKLQNNRFTGRIPSEYLKL-KKLKELDLSHN 514 (550)
Q Consensus 436 ~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l-~~L~~L~l~~n 514 (550)
+|++++|.+++..+..+.++++|++|++++|+++...|..+..+++|++|++++|++....+ +..+ ..++...+.++
T Consensus 82 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~--l~~~~~~l~~~~~~~~ 159 (192)
T 1w8a_A 82 ELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH--LAWFAEWLRKKSLNGG 159 (192)
T ss_dssp EEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG--GHHHHHHHHHHCCSGG
T ss_pred EEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc--chHHHHHHHHcCCCCC
Confidence 88888888887777778888888888888888888888888888888888888888874321 1111 12333345555
Q ss_pred cccccCCCCCCCCCccccCCCCCCCCCCC
Q 008876 515 LLVGEIPAGKPLSDFPESSFSGNRGLCGK 543 (550)
Q Consensus 515 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 543 (550)
......|....- .+-.++..+.+.|.-
T Consensus 160 ~~~C~~P~~l~~--~~l~~l~~~~~~C~~ 186 (192)
T 1w8a_A 160 AARCGAPSKVRD--VQIKDLPHSEFKCSS 186 (192)
T ss_dssp GCBBCSSTTTTT--SBGGGSCTTTCCCCC
T ss_pred CCCCCCChHHcC--CChhhCcHhhcCcCC
Confidence 555555554332 233445556666653
No 119
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.62 E-value=2.5e-15 Score=142.92 Aligned_cols=102 Identities=15% Similarity=0.036 Sum_probs=54.1
Q ss_pred cccccEEEccCCeeeccCCccccCCCCCcEEEccCCccccccccccccCCCCCCCCeEEEeccCCCCCCCCCCCCCCCcc
Q 008876 353 LTQLYSLNLSRNSLVSSIPETITNLQDLVLLDLHSNKLTGSISQVFKIGQRFPDGSLTYIDLSDNGFSSGIELTGGGGQT 432 (550)
Q Consensus 353 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 432 (550)
+++|+.+++.+|.+..+....|.++++|+++++.+| +..++ ...|.++.
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~------------------------------~~aF~~~~ 273 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIG------------------------------QRVFSNCG 273 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEEC------------------------------TTTTTTCT
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceeh------------------------------HHHhhCCh
Confidence 555555555555555555555555555555555443 32221 12344455
Q ss_pred ccc-EEeccCCcccCcCCcccccccccceeeCCCCccceeCCCcCCCCCCCcEEE
Q 008876 433 GIR-FLNLSRNVLEGQIPVSVGRLRSLRSLDLSYNKLGYVLPGSLANESSLETLK 486 (550)
Q Consensus 433 ~L~-~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~ 486 (550)
+|+ .+++.+ .++.+...+|.++++|+.+++++|.++.+.+.+|.++++|++|.
T Consensus 274 ~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 274 RLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp TCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred hccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhc
Confidence 555 555555 44444455566666666666655666555555566666665554
No 120
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.62 E-value=4.4e-15 Score=149.89 Aligned_cols=177 Identities=24% Similarity=0.294 Sum_probs=142.2
Q ss_pred CccEEEcccccCCCCchhhhhccccccEEEccCCeeeccCCccccCCCCCcEEEccCCccccccccccccCCCCCCCCeE
Q 008876 331 PLQELDLSVNHLSGSIPAWIGSLTQLYSLNLSRNSLVSSIPETITNLQDLVLLDLHSNKLTGSISQVFKIGQRFPDGSLT 410 (550)
Q Consensus 331 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~L~ 410 (550)
+++.|++++|.+++ ++..+ +++|+.|++++|.+..++ ..+++|++|++++|+++..+. +. .+|+
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~~ip----~~l~~L~~L~Ls~N~l~~ip~--l~-------~~L~ 123 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALISLP----ELPASLEYLDACDNRLSTLPE--LP-------ASLK 123 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCSCCCC--CC-------TTCC
T ss_pred CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCcccc----cccCCCCEEEccCCCCCCcch--hh-------cCCC
Confidence 48888888888875 33322 378999999999998543 457899999999999987544 32 3899
Q ss_pred EEeccCCCCCCCCCCCCCCCcccccEEeccCCcccCcCCcccccccccceeeCCCCccceeCCCcCCCCCCCcEEECcCc
Q 008876 411 YIDLSDNGFSSGIELTGGGGQTGIRFLNLSRNVLEGQIPVSVGRLRSLRSLDLSYNKLGYVLPGSLANESSLETLKLQNN 490 (550)
Q Consensus 411 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~ 490 (550)
+|++++|.+.+ ++. .+++|+.|++++|.+++ ++. .+++|+.|++++|.++. +|. +. ++|+.|++++|
T Consensus 124 ~L~Ls~N~l~~-lp~----~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N 190 (571)
T 3cvr_A 124 HLDVDNNQLTM-LPE----LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTN 190 (571)
T ss_dssp EEECCSSCCSC-CCC----CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSS
T ss_pred EEECCCCcCCC-CCC----cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCC
Confidence 99999999987 433 68999999999999996 444 57899999999999997 555 65 89999999999
Q ss_pred cccccCCCcccCCCcC-------ceeecCCccccccCCC-CCCCCCccccCCCCCCCCC
Q 008876 491 RFTGRIPSEYLKLKKL-------KELDLSHNLLVGEIPA-GKPLSDFPESSFSGNRGLC 541 (550)
Q Consensus 491 ~~~~~~~~~~~~l~~L-------~~L~l~~n~~~~~~~~-~~~~~~~~~l~~~~~~~~~ 541 (550)
.++ .+|. +.. +| +.|++++|.+.. +|. .+.+++++.|++++|++.+
T Consensus 191 ~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~L~~N~l~~ 244 (571)
T 3cvr_A 191 LLE-SLPA-VPV--RNHHSEETEIFFRCRENRITH-IPENILSLDPTCTIILEDNPLSS 244 (571)
T ss_dssp CCS-SCCC-CC----------CCEEEECCSSCCCC-CCGGGGGSCTTEEEECCSSSCCH
T ss_pred CCC-chhh-HHH--hhhcccccceEEecCCCccee-cCHHHhcCCCCCEEEeeCCcCCC
Confidence 999 6666 554 77 999999999984 776 4458899999999998753
No 121
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.62 E-value=4e-14 Score=137.37 Aligned_cols=263 Identities=11% Similarity=0.098 Sum_probs=117.6
Q ss_pred CcccEeeCCCCCCCCcCCCCCccCCCCCcEEeCCCccCCCCCchhhhhccCCcEEEcCCCcCCCcccccccCCcccchhh
Q 008876 13 TSLEVLDLGGLVDLTGIIPPSIGCLQNLKKLYLYGNKLSGSVPESISKLLKLEELHLHENRLSGTLSSSLGNLKNINQLL 92 (550)
Q Consensus 13 ~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 92 (550)
..++.+.+.+ .+...-..+|.++ +|+.+.+..+ ++.+...+|.++ +|+.+.+.+ .+..+...+|..|++|+.++
T Consensus 113 ~~l~~i~ip~--~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~ 186 (401)
T 4fdw_A 113 KGYNEIILPN--SVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKAD 186 (401)
T ss_dssp SSCSEEECCT--TCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEE
T ss_pred CCccEEEECC--ccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeee
Confidence 4444444443 2232223334443 4555555443 332333344442 355555543 23323344455555555555
Q ss_pred ccccccCccCchhccCCCCCCEEEcccccCccccchhhcCCCCcCeEeccCccccCcCCcccCCCCCCCEEEccCCcccc
Q 008876 93 MHTNQFTGVIPDSFTNLTNLVRLDLHCNYLNGYIPEKIGELQLLEQLDFSNNLLRGKLPPSLCNLTVISVLYLDNNKLEG 172 (550)
Q Consensus 93 l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 172 (550)
++++.+..+...+|. +.+|+.+.+..+ +..+...+|..+++|+.+.+..+ +......+|
T Consensus 187 l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF------------------ 245 (401)
T 4fdw_A 187 LSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAF------------------ 245 (401)
T ss_dssp CTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTT------------------
T ss_pred cCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccc------------------
Confidence 554444444334443 345555554422 33344444555555555554432 121222223
Q ss_pred cccCCCCCCCCCCccEEEcCCCcccccCCCCccCCCCCcEEEcccCccc-----CcchhhccCCCCCcEEEecCccccCC
Q 008876 173 AIPFPSSPGQMPSLGFLRLQDNNLTGKIPPTFGYLASLRRVSLANNKLE-----GAIPTSLGNLQDLTELYLNGNQLSGQ 247 (550)
Q Consensus 173 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-----~~~~~~l~~~~~L~~L~l~~~~~~~~ 247 (550)
.. .+|+.+.+.. .+.......|..+++|+.+.+.++... ......|.++++|+.+.+.. .+...
T Consensus 246 --------~~-~~L~~i~lp~-~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I 314 (401)
T 4fdw_A 246 --------RE-SGITTVKLPN-GVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRIL 314 (401)
T ss_dssp --------TT-CCCSEEEEET-TCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEE
T ss_pred --------cc-CCccEEEeCC-CccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEE
Confidence 33 3455555522 233333444555555555555544332 23344555566666666653 24434
Q ss_pred CcccccCCCcccEEEccCCcccCCCCCcccCCCCccEEEccCCcccCCccchhcccCC-CCcEEEeeccc
Q 008876 248 IPKSISQLSQLIFLSISRNQIEGPLPSGMFSLQNLQTLDLSFNLLNLSSIPMWMAELP-SLSRVYLAGCG 316 (550)
Q Consensus 248 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~-~L~~L~l~~~~ 316 (550)
...+|.+|++|+.+.+..+ ++.....+|..+ +|+.+.+.++..... ....+..++ .++.+.+....
T Consensus 315 ~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l-~~~~F~~~~~~l~~l~vp~~~ 381 (401)
T 4fdw_A 315 GQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQV-FEKVWYGFPDDITVIRVPAES 381 (401)
T ss_dssp CTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBC-CCSSCCCSCTTCCEEEECGGG
T ss_pred hhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCccc-ccccccCCCCCccEEEeCHHH
Confidence 4455555666666666443 332333445555 666666665533221 122333342 45566665543
No 122
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.60 E-value=5.3e-14 Score=137.32 Aligned_cols=103 Identities=14% Similarity=0.075 Sum_probs=63.8
Q ss_pred hhhhccccccEEEccCCeeeccCCccccCCCCCcEEEccCCccccccccccccCCCCCCCCeEEEeccCCCCCCCCCCCC
Q 008876 348 AWIGSLTQLYSLNLSRNSLVSSIPETITNLQDLVLLDLHSNKLTGSISQVFKIGQRFPDGSLTYIDLSDNGFSSGIELTG 427 (550)
Q Consensus 348 ~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 427 (550)
..|..+.+|+.+.+.++ +..+...+|.++.+|+.+++..+ ++.++.. .
T Consensus 291 ~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~------------------------------a 338 (394)
T 4fs7_A 291 KTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKR------------------------------S 338 (394)
T ss_dssp TTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTT------------------------------T
T ss_pred ccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHH------------------------------h
Confidence 35667777887777654 44456667777888888877532 3322222 3
Q ss_pred CCCcccccEEeccCCcccCcCCcccccccccceeeCCCCccceeCCCcCCCCCCCcEE
Q 008876 428 GGGQTGIRFLNLSRNVLEGQIPVSVGRLRSLRSLDLSYNKLGYVLPGSLANESSLETL 485 (550)
Q Consensus 428 ~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L 485 (550)
|.+|.+|+.+++..+ ++.+...+|.++++|+.+++..+ +.. ...+|.++++|+.+
T Consensus 339 F~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~-~~~-~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 339 FRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR-LEQ-YRYDFEDTTKFKWI 393 (394)
T ss_dssp TTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG-GGG-GGGGBCTTCEEEEE
T ss_pred ccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC-CEE-hhheecCCCCCcEE
Confidence 455666666666554 55456667777777777777654 221 23467777777765
No 123
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.57 E-value=2.3e-13 Score=132.82 Aligned_cols=333 Identities=10% Similarity=0.052 Sum_probs=195.7
Q ss_pred CcCCCCCccCCCCCcEEeCCCccCCCCCchhhhhccCCcEEEcCCCcCCCcccccccCCcccchhhccccccCccCchhc
Q 008876 27 TGIIPPSIGCLQNLKKLYLYGNKLSGSVPESISKLLKLEELHLHENRLSGTLSSSLGNLKNINQLLMHTNQFTGVIPDSF 106 (550)
Q Consensus 27 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l 106 (550)
+..-..+|.+|.+|+.+.+..+ ++.+...+|.+|.+|+.+++.++ +..+...+|..++.|+.+.+..+ +......+|
T Consensus 60 tsIg~~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF 136 (394)
T 4fs7_A 60 VSIGYAAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAF 136 (394)
T ss_dssp EEECTTTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTT
T ss_pred eEhHHHHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceee
Confidence 3334456777777777777643 44455566777777777777654 44355566777777777666543 333444556
Q ss_pred cCCCCCCEEEcccccCccccchhhcCCCCcCeEeccCccccCcCCcccCCCCCCCEEEccCCcccccccCCCCCCCCCCc
Q 008876 107 TNLTNLVRLDLHCNYLNGYIPEKIGELQLLEQLDFSNNLLRGKLPPSLCNLTVISVLYLDNNKLEGAIPFPSSPGQMPSL 186 (550)
Q Consensus 107 ~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 186 (550)
.++..++ .... .....+...+|..+++|+.+.+..+... .....+..+.+|+.+.+..+ +.... ..++..++.|
T Consensus 137 ~~~~~~~-~~~~-~~~~~i~~~aF~~c~~L~~i~l~~~~~~-I~~~~F~~c~~L~~i~l~~~-~~~I~--~~~F~~~~~L 210 (394)
T 4fs7_A 137 KGCDFKE-ITIP-EGVTVIGDEAFATCESLEYVSLPDSMET-LHNGLFSGCGKLKSIKLPRN-LKIIR--DYCFAECILL 210 (394)
T ss_dssp TTCCCSE-EECC-TTCCEECTTTTTTCTTCCEEECCTTCCE-ECTTTTTTCTTCCBCCCCTT-CCEEC--TTTTTTCTTC
T ss_pred ecccccc-cccC-ccccccchhhhcccCCCcEEecCCccce-eccccccCCCCceEEEcCCC-ceEeC--chhhcccccc
Confidence 5554332 2221 1222244456777777777777544322 33455666777777766554 11111 1456667777
Q ss_pred cEEEcCCCcccccCCCCccCCCCCcEEEcccCcccCcchhhccCCCCCcEEEecCccccCCCcccccCCCcccEEEccCC
Q 008876 187 GFLRLQDNNLTGKIPPTFGYLASLRRVSLANNKLEGAIPTSLGNLQDLTELYLNGNQLSGQIPKSISQLSQLIFLSISRN 266 (550)
Q Consensus 187 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 266 (550)
+.+.+..+... .........+|+.+.+.... .......+..+..++.+.+..+... .....+..++.++.+.....
T Consensus 211 ~~i~~~~~~~~--i~~~~~~~~~l~~i~ip~~~-~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~ 286 (394)
T 4fs7_A 211 ENMEFPNSLYY--LGDFALSKTGVKNIIIPDSF-TELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSV 286 (394)
T ss_dssp CBCCCCTTCCE--ECTTTTTTCCCCEEEECTTC-CEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSS
T ss_pred ceeecCCCceE--eehhhcccCCCceEEECCCc-eecccccccccccceeEEcCCCcce-eeccccccccccceeccCce
Confidence 76666554322 12223344567777775432 2244456677777888777665433 44455667777777776655
Q ss_pred cccCCCCCcccCCCCccEEEccCCcccCCcc-chhcccCCCCcEEEeecccccccCCccccCCCCCccEEEcccccCCCC
Q 008876 267 QIEGPLPSGMFSLQNLQTLDLSFNLLNLSSI-PMWMAELPSLSRVYLAGCGIKGKIPEFFRTTPSPLQELDLSVNHLSGS 345 (550)
Q Consensus 267 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 345 (550)
.+. ...+..+.+|+.+.+..+ ...+ ...+..+++|+.+.+... +.......|..+. +|+.+.+..+ ++.+
T Consensus 287 ~i~---~~~F~~~~~L~~i~l~~~---i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~-~L~~i~lp~~-l~~I 357 (394)
T 4fs7_A 287 IVP---EKTFYGCSSLTEVKLLDS---VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCT-SLSNINFPLS-LRKI 357 (394)
T ss_dssp EEC---TTTTTTCTTCCEEEECTT---CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCT-TCCEECCCTT-CCEE
T ss_pred eec---cccccccccccccccccc---cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCC-CCCEEEECcc-ccEe
Confidence 432 234556777888877653 1112 335667788888887643 4433344444443 4888888765 5556
Q ss_pred chhhhhccccccEEEccCCeeeccCCccccCCCCCcEE
Q 008876 346 IPAWIGSLTQLYSLNLSRNSLVSSIPETITNLQDLVLL 383 (550)
Q Consensus 346 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L 383 (550)
...+|..|++|+.+++..+ +. .....+.++++|+.+
T Consensus 358 ~~~aF~~C~~L~~i~lp~~-~~-~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 358 GANAFQGCINLKKVELPKR-LE-QYRYDFEDTTKFKWI 393 (394)
T ss_dssp CTTTBTTCTTCCEEEEEGG-GG-GGGGGBCTTCEEEEE
T ss_pred hHHHhhCCCCCCEEEECCC-CE-EhhheecCCCCCcEE
Confidence 6778899999999998754 22 223567788887765
No 124
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.56 E-value=1.9e-14 Score=123.50 Aligned_cols=113 Identities=25% Similarity=0.253 Sum_probs=62.0
Q ss_pred ccccEEeccCCcccCcCCcccccccccceeeCCCCccceeCCCcCCCCCCCcEEECcCccccccCCCcccCCCcCceeec
Q 008876 432 TGIRFLNLSRNVLEGQIPVSVGRLRSLRSLDLSYNKLGYVLPGSLANESSLETLKLQNNRFTGRIPSEYLKLKKLKELDL 511 (550)
Q Consensus 432 ~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 511 (550)
+++++|++++|.+++..+..+..+++|++|++++|.++...+..+.++++|++|++++|.++...+..+..+++|++|++
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l 107 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELAL 107 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEEC
Confidence 44555555555555444444555566666666666665554444555566666666666665444444555666666666
Q ss_pred CCccccccCCCCC-CCCCccccCCCCCCCCCCCC
Q 008876 512 SHNLLVGEIPAGK-PLSDFPESSFSGNRGLCGKP 544 (550)
Q Consensus 512 ~~n~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~ 544 (550)
++|.+.+..+..+ .+++++++++++||+.|.|+
T Consensus 108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 108 DTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp CSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred cCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 6665553322222 25555666666666666554
No 125
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.56 E-value=1.5e-13 Score=133.24 Aligned_cols=251 Identities=9% Similarity=0.096 Sum_probs=165.0
Q ss_pred CccccccCcccEeeCCCCCCCCcCCCCCccCCCCCcEEeCCCccCCCCCchhhhhccCCcEEEcCCCcCCCcccccccCC
Q 008876 6 SPSISLLTSLEVLDLGGLVDLTGIIPPSIGCLQNLKKLYLYGNKLSGSVPESISKLLKLEELHLHENRLSGTLSSSLGNL 85 (550)
Q Consensus 6 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l 85 (550)
+.+|.++ +|+.+.+.. .+...-..+|.++ +|+.+.+.. .++.....+|.+|++|+.+++.++.+..+...+|. +
T Consensus 129 ~~aF~~~-~L~~i~l~~--~i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~ 202 (401)
T 4fdw_A 129 KDAFRNS-QIAKVVLNE--GLKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-Y 202 (401)
T ss_dssp TTTTTTC-CCSEEECCT--TCCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-T
T ss_pred HhhcccC-CccEEEeCC--CccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-e
Confidence 4567775 799999987 3555555677775 799999987 55656678899999999999999888855555665 6
Q ss_pred cccchhhccccccCccCchhccCCCCCCEEEcccccCccccchhhcCCCCcCeEeccCccccCcCCcccCCCCCCCEEEc
Q 008876 86 KNINQLLMHTNQFTGVIPDSFTNLTNLVRLDLHCNYLNGYIPEKIGELQLLEQLDFSNNLLRGKLPPSLCNLTVISVLYL 165 (550)
Q Consensus 86 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l 165 (550)
.+|+.+.+..+ +..+...+|.++++|+.+++..+ +..+...+|.. .+|+.+.+.. .+......+|..+++|+.+.+
T Consensus 203 ~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp~-~i~~I~~~aF~~c~~L~~l~l 278 (401)
T 4fdw_A 203 AGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLPN-GVTNIASRAFYYCPELAEVTT 278 (401)
T ss_dssp CCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEET-TCCEECTTTTTTCTTCCEEEE
T ss_pred cccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeCC-CccEEChhHhhCCCCCCEEEe
Confidence 89999999854 66677888999999999999864 55567778887 7899999853 344345566777777887777
Q ss_pred cCCcccccccCCCCCCCCCCccEEEcCCCcccccCCCCccCCCCCcEEEcccCcccCcchhhccCCCCCcEEEecCcccc
Q 008876 166 DNNKLEGAIPFPSSPGQMPSLGFLRLQDNNLTGKIPPTFGYLASLRRVSLANNKLEGAIPTSLGNLQDLTELYLNGNQLS 245 (550)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 245 (550)
.++..... .........|..+++|+.+.+.. .+......+|.++++|+.+.+..+ ++
T Consensus 279 ~~~~~~~~---------------------~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~ 335 (401)
T 4fdw_A 279 YGSTFNDD---------------------PEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VT 335 (401)
T ss_dssp ESSCCCCC---------------------TTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CC
T ss_pred CCccccCC---------------------cccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-cc
Confidence 76543200 00112233444455555555542 233344445555666666666433 33
Q ss_pred CCCcccccCCCcccEEEccCCcccCCCCCcccCCC-CccEEEccCC
Q 008876 246 GQIPKSISQLSQLIFLSISRNQIEGPLPSGMFSLQ-NLQTLDLSFN 290 (550)
Q Consensus 246 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~L~l~~~ 290 (550)
.....+|.++ +|+.+.+.++.........+..++ +++.+.+..+
T Consensus 336 ~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~ 380 (401)
T 4fdw_A 336 QINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAE 380 (401)
T ss_dssp EECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGG
T ss_pred EEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHH
Confidence 3444455566 666666666554433333444443 5666766654
No 126
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.55 E-value=2e-14 Score=131.56 Aligned_cols=168 Identities=22% Similarity=0.300 Sum_probs=80.7
Q ss_pred CcccchhhccccccCccCchhccCCCCCCEEEcccccCccccchhhcCCCCcCeEeccCccccCcCCcccCCCCCCCEEE
Q 008876 85 LKNINQLLMHTNQFTGVIPDSFTNLTNLVRLDLHCNYLNGYIPEKIGELQLLEQLDFSNNLLRGKLPPSLCNLTVISVLY 164 (550)
Q Consensus 85 l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~ 164 (550)
+.+++.++++++.+.+. + .+..+++|++|++++|.+..+ + .+..+++|++|++++|.+.+.. . +..+++|+.|+
T Consensus 18 l~~l~~l~l~~~~i~~~-~-~~~~l~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~L~~N~i~~~~-~-l~~l~~L~~L~ 91 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTDL-V-SQKELSGVQNFNGDNSNIQSL-A-GMQFFTNLKELHLSHNQISDLS-P-LKDLTKLEELS 91 (263)
T ss_dssp HHHHHHHHHTCSCTTSE-E-CHHHHTTCSEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCG-G-GTTCSSCCEEE
T ss_pred HHHHHHHHhcCCCcccc-c-chhhcCcCcEEECcCCCcccc-h-HHhhCCCCCEEECCCCccCCCh-h-hccCCCCCEEE
Confidence 44455555555555432 1 345555666666666555532 2 4555566666666666555322 2 55555555555
Q ss_pred ccCCcccccccCCCCCCCCCCccEEEcCCCcccccCCCCccCCCCCcEEEcccCcccCcchhhccCCCCCcEEEecCccc
Q 008876 165 LDNNKLEGAIPFPSSPGQMPSLGFLRLQDNNLTGKIPPTFGYLASLRRVSLANNKLEGAIPTSLGNLQDLTELYLNGNQL 244 (550)
Q Consensus 165 l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 244 (550)
+++|.+.+... +.. ++|+.|++++|.+... +.+..+++|+.|++++|.+... + .+..+++|++|++++|.+
T Consensus 92 L~~N~l~~l~~----~~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i 162 (263)
T 1xeu_A 92 VNRNRLKNLNG----IPS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEI 162 (263)
T ss_dssp CCSSCCSCCTT----CCC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCC
T ss_pred CCCCccCCcCc----ccc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcC
Confidence 55555443211 111 4555555555554422 2244445555555555544432 1 344445555555555544
Q ss_pred cCCCcccccCCCcccEEEccCCccc
Q 008876 245 SGQIPKSISQLSQLIFLSISRNQIE 269 (550)
Q Consensus 245 ~~~~~~~l~~~~~L~~L~l~~~~~~ 269 (550)
.+. ..+..+++|+.|++++|.+.
T Consensus 163 ~~~--~~l~~l~~L~~L~l~~N~~~ 185 (263)
T 1xeu_A 163 TNT--GGLTRLKKVNWIDLTGQKCV 185 (263)
T ss_dssp CBC--TTSTTCCCCCEEEEEEEEEE
T ss_pred cch--HHhccCCCCCEEeCCCCccc
Confidence 432 33444444444444444443
No 127
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.53 E-value=2.7e-14 Score=121.42 Aligned_cols=131 Identities=23% Similarity=0.232 Sum_probs=69.3
Q ss_pred CCCcEEeCCCccCC-CCCchhhhhccCCcEEEcCCCcCCCcccccccCCcccchhhccccccCccCchhccCCCCCCEEE
Q 008876 38 QNLKKLYLYGNKLS-GSVPESISKLLKLEELHLHENRLSGTLSSSLGNLKNINQLLMHTNQFTGVIPDSFTNLTNLVRLD 116 (550)
Q Consensus 38 ~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ 116 (550)
++|++|++++|.++ +.+|..+..+++|++|++++|.+... ..+..+++|++|++++|.+....|..+..+++|++|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 44555555555554 34444455555555555555555422 4455555555555555555544444444555666666
Q ss_pred cccccCcccc-chhhcCCCCcCeEeccCccccCcCC---cccCCCCCCCEEEccCCcc
Q 008876 117 LHCNYLNGYI-PEKIGELQLLEQLDFSNNLLRGKLP---PSLCNLTVISVLYLDNNKL 170 (550)
Q Consensus 117 l~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~---~~l~~~~~L~~L~l~~~~~ 170 (550)
+++|.+.... +..+..+++|++|++++|.+....+ ..+..+++|+.|++++|..
T Consensus 102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~ 159 (168)
T 2ell_A 102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRED 159 (168)
T ss_dssp CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTS
T ss_pred ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCCh
Confidence 6655555432 1445555666666666665553322 2455556666666655544
No 128
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.52 E-value=8.5e-14 Score=120.81 Aligned_cols=109 Identities=24% Similarity=0.302 Sum_probs=72.2
Q ss_pred CeEEEeccCCCCCCCCCCCCCCCcccccEEeccCCcccCcCCcccccccccceeeCCCCccceeCCCcCCCCCCCcEEEC
Q 008876 408 SLTYIDLSDNGFSSGIELTGGGGQTGIRFLNLSRNVLEGQIPVSVGRLRSLRSLDLSYNKLGYVLPGSLANESSLETLKL 487 (550)
Q Consensus 408 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l 487 (550)
.+++|++++|.+.. ++ ..+..+++|++|++++|.+++..+..|.++++|++|++++|.++.+.+..|.++++|++|++
T Consensus 32 ~l~~L~L~~n~i~~-ip-~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L 109 (193)
T 2wfh_A 32 DVTELYLDGNQFTL-VP-KELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSL 109 (193)
T ss_dssp TCCEEECCSSCCCS-CC-GGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEEC
T ss_pred CCCEEECCCCcCch-hH-HHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEEC
Confidence 34444444444432 22 24456667777777777777666666777777777777777777776667777777777777
Q ss_pred cCccccccCCCcccCCCcCceeecCCccccc
Q 008876 488 QNNRFTGRIPSEYLKLKKLKELDLSHNLLVG 518 (550)
Q Consensus 488 ~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~ 518 (550)
++|.+....+..|..+++|+.|++++|++..
T Consensus 110 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 110 HGNDISVVPEGAFNDLSALSHLAIGANPLYC 140 (193)
T ss_dssp CSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred CCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence 7777775544456777777777777777753
No 129
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.52 E-value=2.4e-14 Score=118.97 Aligned_cols=129 Identities=23% Similarity=0.241 Sum_probs=85.8
Q ss_pred ccCcccEeeCCCCCCCC-cCCCCCccCCCCCcEEeCCCccCCCCCchhhhhccCCcEEEcCCCcCCCcccccccCCcccc
Q 008876 11 LLTSLEVLDLGGLVDLT-GIIPPSIGCLQNLKKLYLYGNKLSGSVPESISKLLKLEELHLHENRLSGTLSSSLGNLKNIN 89 (550)
Q Consensus 11 ~~~~L~~L~l~~~~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 89 (550)
..++|+.|++++| .+. +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+....|..+..+++|+
T Consensus 15 ~~~~l~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~ 91 (149)
T 2je0_A 15 TPSDVKELVLDNS-RSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLT 91 (149)
T ss_dssp CGGGCSEEECTTC-BCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCC
T ss_pred CCccCeEEEccCC-cCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCC
Confidence 3467777777774 343 46676677777777777777777644 5566777777777777777644566666677777
Q ss_pred hhhccccccCcc-CchhccCCCCCCEEEcccccCccccc---hhhcCCCCcCeEecc
Q 008876 90 QLLMHTNQFTGV-IPDSFTNLTNLVRLDLHCNYLNGYIP---EKIGELQLLEQLDFS 142 (550)
Q Consensus 90 ~L~l~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~---~~l~~l~~L~~L~l~ 142 (550)
+|++++|.+.+. .+..+..+++|++|++++|.+....+ ..+..+++|+.|+++
T Consensus 92 ~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 92 HLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp EEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred EEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 777777776643 22556667777777777776664433 356666677766654
No 130
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.52 E-value=4.4e-14 Score=120.05 Aligned_cols=134 Identities=25% Similarity=0.226 Sum_probs=102.0
Q ss_pred ccCcccEeeCCCCCCCC-cCCCCCccCCCCCcEEeCCCccCCCCCchhhhhccCCcEEEcCCCcCCCcccccccCCcccc
Q 008876 11 LLTSLEVLDLGGLVDLT-GIIPPSIGCLQNLKKLYLYGNKLSGSVPESISKLLKLEELHLHENRLSGTLSSSLGNLKNIN 89 (550)
Q Consensus 11 ~~~~L~~L~l~~~~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 89 (550)
..++|++|++++|. +. +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+....+..+..+++|+
T Consensus 22 ~~~~L~~L~l~~n~-l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 98 (168)
T 2ell_A 22 TPAAVRELVLDNCK-SNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLT 98 (168)
T ss_dssp CTTSCSEEECCSCB-CBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCC
T ss_pred CcccCCEEECCCCC-CChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCC
Confidence 34778888888854 43 46777778888888888888887754 6677888888888888888755666677788888
Q ss_pred hhhccccccCccC-chhccCCCCCCEEEcccccCccccc---hhhcCCCCcCeEeccCcccc
Q 008876 90 QLLMHTNQFTGVI-PDSFTNLTNLVRLDLHCNYLNGYIP---EKIGELQLLEQLDFSNNLLR 147 (550)
Q Consensus 90 ~L~l~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~---~~l~~l~~L~~L~l~~~~~~ 147 (550)
+|++++|.+.+.. +..+..+++|++|++++|.+....+ ..+..+++|++|++++|...
T Consensus 99 ~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 99 HLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp EEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred EEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 8888888887542 2567888888888888888875544 46778888888888888765
No 131
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.51 E-value=1.3e-13 Score=118.24 Aligned_cols=113 Identities=24% Similarity=0.226 Sum_probs=79.7
Q ss_pred CeEEEeccCCCCCCCCCCCCCCCcccccEEeccCCcccCcCCcccccccccceeeCCCCccceeCCCcCCCCCCCcEEEC
Q 008876 408 SLTYIDLSDNGFSSGIELTGGGGQTGIRFLNLSRNVLEGQIPVSVGRLRSLRSLDLSYNKLGYVLPGSLANESSLETLKL 487 (550)
Q Consensus 408 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l 487 (550)
++++|++++|.+.+ +....+..+++|++|++++|.+++..+..+..+++|++|++++|.++...+..+..+++|++|++
T Consensus 29 ~l~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l 107 (177)
T 2o6r_A 29 SATRLELESNKLQS-LPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELAL 107 (177)
T ss_dssp TCSEEECCSSCCCC-CCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCcEEEeCCCcccE-eCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEEC
Confidence 44555555554442 22234556777888888888777666666778888888888888888776666777888888888
Q ss_pred cCccccccCCCcccCCCcCceeecCCccccccCC
Q 008876 488 QNNRFTGRIPSEYLKLKKLKELDLSHNLLVGEIP 521 (550)
Q Consensus 488 ~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ 521 (550)
++|.+....+..+..+++|++|++++|++.+..|
T Consensus 108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 108 DTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp CSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred cCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 8888875554456778888888888888776544
No 132
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.50 E-value=1.2e-15 Score=154.82 Aligned_cols=179 Identities=24% Similarity=0.296 Sum_probs=93.6
Q ss_pred cCCCCCcEEeCCCccCCCCCchhhhhccCCcEEEcCCCc-------------CCCcccccccCCcccchhh-ccccccCc
Q 008876 35 GCLQNLKKLYLYGNKLSGSVPESISKLLKLEELHLHENR-------------LSGTLSSSLGNLKNINQLL-MHTNQFTG 100 (550)
Q Consensus 35 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-------------~~~~~~~~~~~l~~L~~L~-l~~~~~~~ 100 (550)
..+++|+.|+++++.++ .+|..+..+++|+.|+++++. .....|..+..+++|+.|+ ++.+.+..
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~ 424 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDD 424 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccch
Confidence 45677778888887776 677778788888888876653 2223344555666666665 44332211
Q ss_pred cCc-----hhccC--CCCCCEEEcccccCccccchhhcCCCCcCeEeccCccccCcCCcccCCCCCCCEEEccCCccccc
Q 008876 101 VIP-----DSFTN--LTNLVRLDLHCNYLNGYIPEKIGELQLLEQLDFSNNLLRGKLPPSLCNLTVISVLYLDNNKLEGA 173 (550)
Q Consensus 101 ~~~-----~~l~~--l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 173 (550)
... ..+.. ...|+.|++++|.++. .+. +..+++|+.|++++|.+. .+|..+..+
T Consensus 425 L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l---------------- 485 (567)
T 1dce_A 425 LRSKFLLENSVLKMEYADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAAL---------------- 485 (567)
T ss_dssp HHHHHHHHHHHHHHHHTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGC----------------
T ss_pred hhhhhhhcccccccCccCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcC----------------
Confidence 000 00000 0134555555554443 222 444555555555555444 344444444
Q ss_pred ccCCCCCCCCCCccEEEcCCCcccccCCCCccCCCCCcEEEcccCcccCcc-hhhccCCCCCcEEEecCcccc
Q 008876 174 IPFPSSPGQMPSLGFLRLQDNNLTGKIPPTFGYLASLRRVSLANNKLEGAI-PTSLGNLQDLTELYLNGNQLS 245 (550)
Q Consensus 174 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~-~~~l~~~~~L~~L~l~~~~~~ 245 (550)
++|+.|++++|.++. ++ .+..+++|+.|++++|.+.... +..++.+++|+.|++++|+++
T Consensus 486 ----------~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~ 546 (567)
T 1dce_A 486 ----------RCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLC 546 (567)
T ss_dssp ----------TTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGG
T ss_pred ----------CCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCC
Confidence 455555555554443 22 4455555555555555555443 455555566666666665554
No 133
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.49 E-value=2.6e-16 Score=159.79 Aligned_cols=186 Identities=22% Similarity=0.214 Sum_probs=135.3
Q ss_pred CccEEEcccccCCCCchhhhhccccccEEEccCCe-------------eeccCCccccCCCCCcEEE-ccCCcccccccc
Q 008876 331 PLQELDLSVNHLSGSIPAWIGSLTQLYSLNLSRNS-------------LVSSIPETITNLQDLVLLD-LHSNKLTGSISQ 396 (550)
Q Consensus 331 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-------------~~~~~~~~l~~~~~L~~L~-l~~~~i~~~~~~ 396 (550)
+|+.|++++|.+. .++..+..+++|+.|++++|. .....+..+..+++|+.|+ ++.|.+......
T Consensus 350 ~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~L~~l 428 (567)
T 1dce_A 350 QLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSK 428 (567)
T ss_dssp TSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred cceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccchhhhh
Confidence 3667777777765 456666777777777775553 2223344555666677776 444433221111
Q ss_pred cccc--CCCCCCCCeEEEeccCCCCCCCCCCCCCCCcccccEEeccCCcccCcCCcccccccccceeeCCCCccceeCCC
Q 008876 397 VFKI--GQRFPDGSLTYIDLSDNGFSSGIELTGGGGQTGIRFLNLSRNVLEGQIPVSVGRLRSLRSLDLSYNKLGYVLPG 474 (550)
Q Consensus 397 ~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~ 474 (550)
.+.. ....+...|+.|++++|.+++ ++ .+..+++|+.|++++|.++ .+|..+.++++|+.|++++|.++. +|
T Consensus 429 ~l~~n~i~~l~~~~L~~L~Ls~n~l~~-lp--~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp- 502 (567)
T 1dce_A 429 FLLENSVLKMEYADVRVLHLAHKDLTV-LC--HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD- 502 (567)
T ss_dssp HHHHHHHHHHHHTTCSEEECTTSCCSS-CC--CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-
T ss_pred hhhcccccccCccCceEEEecCCCCCC-Cc--CccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-
Confidence 0000 000011468899999999876 33 3788999999999999999 678899999999999999999996 45
Q ss_pred cCCCCCCCcEEECcCccccccC-CCcccCCCcCceeecCCccccccCCCC
Q 008876 475 SLANESSLETLKLQNNRFTGRI-PSEYLKLKKLKELDLSHNLLVGEIPAG 523 (550)
Q Consensus 475 ~l~~l~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~n~~~~~~~~~ 523 (550)
.+.++++|++|++++|.+++.. |..+..+++|+.|++++|++.+..|..
T Consensus 503 ~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~ 552 (567)
T 1dce_A 503 GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQ 552 (567)
T ss_dssp GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCT
T ss_pred ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHH
Confidence 7899999999999999999776 889999999999999999998766644
No 134
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.49 E-value=3.7e-14 Score=117.85 Aligned_cols=129 Identities=20% Similarity=0.210 Sum_probs=101.8
Q ss_pred CCCCCcEEeCCCccCC-CCCchhhhhccCCcEEEcCCCcCCCcccccccCCcccchhhccccccCccCchhccCCCCCCE
Q 008876 36 CLQNLKKLYLYGNKLS-GSVPESISKLLKLEELHLHENRLSGTLSSSLGNLKNINQLLMHTNQFTGVIPDSFTNLTNLVR 114 (550)
Q Consensus 36 ~l~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~ 114 (550)
..++|++|+++++.++ +.+|..+..+++|++|++++|.+... ..+..+++|++|++++|.+....|..+..+++|++
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~ 92 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTH 92 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCE
T ss_pred CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCE
Confidence 3478899999999887 56777788889999999999988744 66788889999999999888667777777888999
Q ss_pred EEcccccCccc-cchhhcCCCCcCeEeccCccccCcCC---cccCCCCCCCEEEcc
Q 008876 115 LDLHCNYLNGY-IPEKIGELQLLEQLDFSNNLLRGKLP---PSLCNLTVISVLYLD 166 (550)
Q Consensus 115 L~l~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~---~~l~~~~~L~~L~l~ 166 (550)
|++++|.+... .+..+..+++|++|++++|.+.+..+ ..+..+++|+.|+++
T Consensus 93 L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 93 LNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp EECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred EECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 99988888754 23678888888888888888875443 356677777777664
No 135
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.45 E-value=2.9e-13 Score=114.85 Aligned_cols=107 Identities=22% Similarity=0.256 Sum_probs=58.3
Q ss_pred cEEeccCCcccCcCCcccccccccceeeCCCCccceeCCCcCCCCCCCcEEECcCccccccCCCcccCCCcCceeecCCc
Q 008876 435 RFLNLSRNVLEGQIPVSVGRLRSLRSLDLSYNKLGYVLPGSLANESSLETLKLQNNRFTGRIPSEYLKLKKLKELDLSHN 514 (550)
Q Consensus 435 ~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n 514 (550)
+.++++++.++. +|..+ .++|+.|++++|.++...+..|.++++|++|++++|.+....+..|..+++|++|++++|
T Consensus 12 ~~l~~s~n~l~~-ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 12 TTVDCSGKSLAS-VPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TEEECTTSCCSS-CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcCc-cCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 455555555552 23322 245566666666666555555555666666666666665444444555666666666666
Q ss_pred cccccCCCCC-CCCCccccCCCCCCCCCCCC
Q 008876 515 LLVGEIPAGK-PLSDFPESSFSGNRGLCGKP 544 (550)
Q Consensus 515 ~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~ 544 (550)
.+.+..+..+ .+++++++++++|||.|.|+
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~ 119 (170)
T 3g39_A 89 QLKSIPRGAFDNLKSLTHIWLLNNPWDCACS 119 (170)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred ccCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence 6554333322 25556666666666666653
No 136
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.43 E-value=1.9e-13 Score=117.06 Aligned_cols=106 Identities=24% Similarity=0.139 Sum_probs=82.7
Q ss_pred CeEEEeccCCCCCCCCCCCCCCCcccccEEeccCCcccCcCCcccccccccceeeCCCCccceeCCC--cCCCCCCCcEE
Q 008876 408 SLTYIDLSDNGFSSGIELTGGGGQTGIRFLNLSRNVLEGQIPVSVGRLRSLRSLDLSYNKLGYVLPG--SLANESSLETL 485 (550)
Q Consensus 408 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~--~l~~l~~L~~L 485 (550)
+|++|++++|.+.+. ..+..+++|++|++++|.+++..+..+..+++|++|++++|.++.. |. .+.++++|++|
T Consensus 43 ~L~~L~Ls~N~l~~~---~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~-~~~~~l~~l~~L~~L 118 (176)
T 1a9n_A 43 QFDAIDFSDNEIRKL---DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVEL-GDLDPLASLKSLTYL 118 (176)
T ss_dssp CCSEEECCSSCCCEE---CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCCCG-GGGGGGGGCTTCCEE
T ss_pred CCCEEECCCCCCCcc---cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCCcc-hhhHhhhcCCCCCEE
Confidence 555555555555442 3566788899999999999866555668899999999999999753 43 67889999999
Q ss_pred ECcCccccccCCCc----ccCCCcCceeecCCccccc
Q 008876 486 KLQNNRFTGRIPSE----YLKLKKLKELDLSHNLLVG 518 (550)
Q Consensus 486 ~l~~~~~~~~~~~~----~~~l~~L~~L~l~~n~~~~ 518 (550)
++++|++. ..|.. +..+++|+.|++++|...+
T Consensus 119 ~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~~ 154 (176)
T 1a9n_A 119 CILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLKE 154 (176)
T ss_dssp ECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred EecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHHH
Confidence 99999998 45664 7889999999999998764
No 137
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.42 E-value=1.2e-11 Score=120.70 Aligned_cols=318 Identities=12% Similarity=0.109 Sum_probs=163.0
Q ss_pred ccccccC-cccEeeCCCCCCCCcCCCCCccCCCCCcEEeCCCcc---CCCCCchhhhhccCCcEEEcCCCcCCCcccccc
Q 008876 7 PSISLLT-SLEVLDLGGLVDLTGIIPPSIGCLQNLKKLYLYGNK---LSGSVPESISKLLKLEELHLHENRLSGTLSSSL 82 (550)
Q Consensus 7 ~~~~~~~-~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~---~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~ 82 (550)
.+|.+++ .|+.+.+.. .+...-..+|.+|++|+.+.+..+. ++.+...+|..+.+|+.+.+..+ +..+...+|
T Consensus 57 ~aF~~~~~~L~sI~iP~--svt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF 133 (394)
T 4gt6_A 57 RVFCNYKYVLTSVQIPD--TVTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAF 133 (394)
T ss_dssp TTTTTCCSCCCEEEECT--TCCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTT
T ss_pred hhccCCCCcCEEEEECC--CeeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhh
Confidence 3455553 356666654 3343444455566666666554432 33333445555555555555443 222344455
Q ss_pred cCCcccchhhccccccCccCchhccCCCCCCEEEcccccCccccchhhcCCCCcCeEeccCccccCcCCcccCCCCCCCE
Q 008876 83 GNLKNINQLLMHTNQFTGVIPDSFTNLTNLVRLDLHCNYLNGYIPEKIGELQLLEQLDFSNNLLRGKLPPSLCNLTVISV 162 (550)
Q Consensus 83 ~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~ 162 (550)
..+.+|+.+.+.... ..+...+|..+.+|+.+.+..+ +..+...+|.. ..|+.+.+...-.. .....+..+..+..
T Consensus 134 ~~c~~L~~i~lp~~~-~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~-~~l~~i~ip~~~~~-i~~~af~~c~~l~~ 209 (394)
T 4gt6_A 134 HHCEELDTVTIPEGV-TSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTG-TALTQIHIPAKVTR-IGTNAFSECFALST 209 (394)
T ss_dssp TTCTTCCEEECCTTC-CEECTTTTTTCTTCCEEECCTT-CCEECTTTTTT-CCCSEEEECTTCCE-ECTTTTTTCTTCCE
T ss_pred hhhccccccccccee-eeecccceecccccccccccce-eeEeccccccc-cceeEEEECCcccc-cccchhhhccccce
Confidence 555566655554332 2234445555566666555433 22233344432 34555555433211 23334455555555
Q ss_pred EEccCCcccccccCC-----------CCCCCCCCccEEEcCCCcccccCCCCccCCCCCcEEEcccCcccCcchhhccCC
Q 008876 163 LYLDNNKLEGAIPFP-----------SSPGQMPSLGFLRLQDNNLTGKIPPTFGYLASLRRVSLANNKLEGAIPTSLGNL 231 (550)
Q Consensus 163 L~l~~~~~~~~~~~~-----------~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~ 231 (550)
............... ........+..+.+... +.......|..+..|+.+.+...... .....|.++
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~-v~~i~~~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c 287 (394)
T 4gt6_A 210 ITSDSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIPNG-VARIETHAFDSCAYLASVKMPDSVVS-IGTGAFMNC 287 (394)
T ss_dssp EEECCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECCTT-EEEECTTTTTTCSSCCEEECCTTCCE-ECTTTTTTC
T ss_pred ecccccccccccceeecccccccccccccccccccceEEcCCc-ceEcccceeeecccccEEecccccce-ecCcccccc
Confidence 444332211100000 00111122333333222 22234456778888999988765433 556678888
Q ss_pred CCCcEEEecCccccCCCcccccCCCcccEEEccCCcccCCCCCcccCCCCccEEEccCCcccCCccchhcccCCCCcEEE
Q 008876 232 QDLTELYLNGNQLSGQIPKSISQLSQLIFLSISRNQIEGPLPSGMFSLQNLQTLDLSFNLLNLSSIPMWMAELPSLSRVY 311 (550)
Q Consensus 232 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~ 311 (550)
+.|+.+.+.. .++......|.+|.+|+.+.+..+ ++.....+|..+.+|+.+.+..+ ++.. -...|..|++|+.++
T Consensus 288 ~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I-~~~aF~~C~~L~~i~ 363 (394)
T 4gt6_A 288 PALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKI-PESAFSNCTALNNIE 363 (394)
T ss_dssp TTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBC-CGGGGTTCTTCCEEE
T ss_pred cccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEE-hHhHhhCCCCCCEEE
Confidence 9999998864 344456667888999999998764 33344556778889999998654 2211 234677889999999
Q ss_pred eecccccccCCccccCCCCCccEEEccccc
Q 008876 312 LAGCGIKGKIPEFFRTTPSPLQELDLSVNH 341 (550)
Q Consensus 312 l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 341 (550)
+.++.... ..+.. ..+|+.+.+..+.
T Consensus 364 ~~~~~~~~---~~~~~-~~~L~~i~i~~~~ 389 (394)
T 4gt6_A 364 YSGSRSQW---NAIST-DSGLQNLPVAPGS 389 (394)
T ss_dssp ESSCHHHH---HTCBC-CCCC---------
T ss_pred ECCceeeh---hhhhc-cCCCCEEEeCCCC
Confidence 88765321 12222 2347777776544
No 138
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.40 E-value=1.1e-12 Score=111.57 Aligned_cols=107 Identities=21% Similarity=0.265 Sum_probs=61.2
Q ss_pred cEEeccCCcccCcCCcccccccccceeeCCCCccceeCCCcCCCCCCCcEEECcCccccccCCCcccCCCcCceeecCCc
Q 008876 435 RFLNLSRNVLEGQIPVSVGRLRSLRSLDLSYNKLGYVLPGSLANESSLETLKLQNNRFTGRIPSEYLKLKKLKELDLSHN 514 (550)
Q Consensus 435 ~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n 514 (550)
+.++++++.++ .+|..+. ++|++|++++|.++...|..+.++++|++|++++|.+....+..|.++++|++|++++|
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 45555555554 2333332 55666666666666655666666666666666666666443334556666666666666
Q ss_pred cccccCCCCC-CCCCccccCCCCCCCCCCCC
Q 008876 515 LLVGEIPAGK-PLSDFPESSFSGNRGLCGKP 544 (550)
Q Consensus 515 ~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~ 544 (550)
.+.+..+..+ .+++++++++++|||.|.|+
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~ 122 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWDCECR 122 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBCTTBG
T ss_pred ccceeCHHHhccccCCCEEEeCCCCcccccc
Confidence 6654333322 25566666666666666664
No 139
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.38 E-value=7.1e-11 Score=115.14 Aligned_cols=155 Identities=11% Similarity=0.109 Sum_probs=82.0
Q ss_pred CcccCCCC-CCCEEEccCCcccccccCCCCCCCCCCccEEEcCCC---cccccCCCCccCCCCCcEEEcccCcccCcchh
Q 008876 151 PPSLCNLT-VISVLYLDNNKLEGAIPFPSSPGQMPSLGFLRLQDN---NLTGKIPPTFGYLASLRRVSLANNKLEGAIPT 226 (550)
Q Consensus 151 ~~~l~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~---~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~ 226 (550)
..+|.+++ .|+.+.+... +..... .+|.++.+|+.+.+..+ .+.......|..+.+|+.+.+..+ +......
T Consensus 56 ~~aF~~~~~~L~sI~iP~s-vt~Ig~--~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~ 131 (394)
T 4gt6_A 56 DRVFCNYKYVLTSVQIPDT-VTEIGS--NAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSE 131 (394)
T ss_dssp TTTTTTCCSCCCEEEECTT-CCEECT--TTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTT
T ss_pred HhhccCCCCcCEEEEECCC-eeEEhH--HHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhh
Confidence 34566653 4777777654 222222 56777777777777654 244444556666777776666543 3334445
Q ss_pred hccCCCCCcEEEecCccccCCCcccccCCCcccEEEccCCcccCCCCCcccCCCCccEEEccCCcccCCccchhcccCCC
Q 008876 227 SLGNLQDLTELYLNGNQLSGQIPKSISQLSQLIFLSISRNQIEGPLPSGMFSLQNLQTLDLSFNLLNLSSIPMWMAELPS 306 (550)
Q Consensus 227 ~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 306 (550)
.|..+.+|+.+.+.... .......+..+..|+.+.+..+- +..-..++ ....|+.+.+..... ......+..+.+
T Consensus 132 aF~~c~~L~~i~lp~~~-~~I~~~~F~~c~~L~~i~~~~~~-~~I~~~aF-~~~~l~~i~ip~~~~--~i~~~af~~c~~ 206 (394)
T 4gt6_A 132 AFHHCEELDTVTIPEGV-TSVADGMFSYCYSLHTVTLPDSV-TAIEERAF-TGTALTQIHIPAKVT--RIGTNAFSECFA 206 (394)
T ss_dssp TTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCEEECCTTC-CEECTTTT-TTCCCSEEEECTTCC--EECTTTTTTCTT
T ss_pred hhhhhccccccccccee-eeecccceeccccccccccccee-eEeccccc-cccceeEEEECCccc--ccccchhhhccc
Confidence 66667777777775432 22344556666777777765532 21111222 234566666654321 111233445555
Q ss_pred CcEEEeec
Q 008876 307 LSRVYLAG 314 (550)
Q Consensus 307 L~~L~l~~ 314 (550)
++......
T Consensus 207 l~~~~~~~ 214 (394)
T 4gt6_A 207 LSTITSDS 214 (394)
T ss_dssp CCEEEECC
T ss_pred cceecccc
Confidence 65555443
No 140
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.36 E-value=1.2e-12 Score=111.88 Aligned_cols=131 Identities=17% Similarity=0.205 Sum_probs=67.2
Q ss_pred ccCCCCCcEEeCCCccCCCCCchhhhhc-cCCcEEEcCCCcCCCcccccccCCcccchhhccccccCccCchhccCCCCC
Q 008876 34 IGCLQNLKKLYLYGNKLSGSVPESISKL-LKLEELHLHENRLSGTLSSSLGNLKNINQLLMHTNQFTGVIPDSFTNLTNL 112 (550)
Q Consensus 34 l~~l~~L~~L~l~~~~~~~~~~~~~~~l-~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L 112 (550)
+..+++|++|++++|.++ .++. +..+ ++|++|++++|.+... ..+..+++|++|++++|.+....+..+..+++|
T Consensus 15 ~~~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 90 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL 90 (176)
T ss_dssp EECTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred cCCcCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCC
Confidence 344555566666665555 2232 3333 3566666666655422 345555566666666665554333334555666
Q ss_pred CEEEcccccCccccc-hhhcCCCCcCeEeccCccccCcCCc----ccCCCCCCCEEEccCCc
Q 008876 113 VRLDLHCNYLNGYIP-EKIGELQLLEQLDFSNNLLRGKLPP----SLCNLTVISVLYLDNNK 169 (550)
Q Consensus 113 ~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~----~l~~~~~L~~L~l~~~~ 169 (550)
++|++++|.+..... ..+..+++|+.|++++|.+. ..+. .+..+++|+.|+++++.
T Consensus 91 ~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 91 TELILTNNSLVELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp CEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECC
T ss_pred CEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCC
Confidence 666666665543221 24555666666666666554 2232 24445555555555543
No 141
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.35 E-value=2.6e-13 Score=142.31 Aligned_cols=140 Identities=21% Similarity=0.207 Sum_probs=68.3
Q ss_pred cccCCCCCcEEEccCCccccccccccccCCCCCCCCeEEEeccCCCCCCCCCCCCCCCcccccEEeccCCcccCcCCccc
Q 008876 373 TITNLQDLVLLDLHSNKLTGSISQVFKIGQRFPDGSLTYIDLSDNGFSSGIELTGGGGQTGIRFLNLSRNVLEGQIPVSV 452 (550)
Q Consensus 373 ~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l 452 (550)
.+..++.|+.|++++|.+.......+.. +.|++|++++|.+. .++ ..+..+++|++|++++|.++ .+|..+
T Consensus 219 ~~~~l~~L~~L~Ls~n~l~~l~~~~~~l------~~L~~L~Ls~N~l~-~lp-~~~~~l~~L~~L~Ls~N~l~-~lp~~~ 289 (727)
T 4b8c_D 219 SKYDDQLWHALDLSNLQIFNISANIFKY------DFLTRLYLNGNSLT-ELP-AEIKNLSNLRVLDLSHNRLT-SLPAEL 289 (727)
T ss_dssp ---CCCCCCEEECTTSCCSCCCGGGGGC------CSCSCCBCTTSCCS-CCC-GGGGGGTTCCEEECTTSCCS-SCCSSG
T ss_pred hhccCCCCcEEECCCCCCCCCChhhcCC------CCCCEEEeeCCcCc-ccC-hhhhCCCCCCEEeCcCCcCC-ccChhh
Confidence 3344444444444444444333322211 34445555555444 222 13455566666666666665 445556
Q ss_pred ccccccceeeCCCCccceeCCCcCCCCCCCcEEECcCccccccCCCcccCC-CcCceeecCCccccccCCC
Q 008876 453 GRLRSLRSLDLSYNKLGYVLPGSLANESSLETLKLQNNRFTGRIPSEYLKL-KKLKELDLSHNLLVGEIPA 522 (550)
Q Consensus 453 ~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l-~~L~~L~l~~n~~~~~~~~ 522 (550)
..+++|++|+|++|.++ .+|..+..+++|++|+|++|.+.+..|..+..+ ..+..+++++|.+.+.+|.
T Consensus 290 ~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~ 359 (727)
T 4b8c_D 290 GSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH 359 (727)
T ss_dssp GGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_pred cCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcc
Confidence 66666666666666665 345556666666666666666665444444332 1112244455555444443
No 142
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.34 E-value=1.8e-13 Score=143.40 Aligned_cols=153 Identities=22% Similarity=0.263 Sum_probs=82.6
Q ss_pred CcccEeeCCCCCCCCcCCCCCccCCCCCcEEeCC-----CccCCCCCchhhhhccCCcEEEcCCCcCCCcccccccCCcc
Q 008876 13 TSLEVLDLGGLVDLTGIIPPSIGCLQNLKKLYLY-----GNKLSGSVPESISKLLKLEELHLHENRLSGTLSSSLGNLKN 87 (550)
Q Consensus 13 ~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~-----~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~ 87 (550)
+.++.|++.++ .+. ..+..+.....|+.+.|. .+.+. ..+..+..+++|+.|+|++|.+. ..+..+..+++
T Consensus 173 ~~~~~l~L~~n-~~~-~~~~~~l~~l~Ls~~~i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~ 248 (727)
T 4b8c_D 173 PLTPKIELFAN-GKD-EANQALLQHKKLSQYSIDEDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDF 248 (727)
T ss_dssp ----------------------------------------------------CCCCCCEEECTTSCCS-CCCGGGGGCCS
T ss_pred CccceEEeeCC-CCC-cchhhHhhcCccCcccccCcccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCC
Confidence 55677777652 222 234444444444443333 23333 44666777778888888887776 45555667788
Q ss_pred cchhhccccccCccCchhccCCCCCCEEEcccccCccccchhhcCCCCcCeEeccCccccCcCCcccCCCCCCCEEEccC
Q 008876 88 INQLLMHTNQFTGVIPDSFTNLTNLVRLDLHCNYLNGYIPEKIGELQLLEQLDFSNNLLRGKLPPSLCNLTVISVLYLDN 167 (550)
Q Consensus 88 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~ 167 (550)
|++|++++|.+. .+|..|..+++|++|++++|.+. .+|..+..+++|++|++++|.+. .+|..+..+++|+.|++++
T Consensus 249 L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~ 325 (727)
T 4b8c_D 249 LTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEG 325 (727)
T ss_dssp CSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTT
T ss_pred CCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCC
Confidence 888888888777 66777777888888888888777 45677777888888888888776 5666677788888888888
Q ss_pred Ccccc
Q 008876 168 NKLEG 172 (550)
Q Consensus 168 ~~~~~ 172 (550)
|.+.+
T Consensus 326 N~l~~ 330 (727)
T 4b8c_D 326 NPLEK 330 (727)
T ss_dssp SCCCS
T ss_pred CccCC
Confidence 77654
No 143
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.31 E-value=2.9e-14 Score=124.70 Aligned_cols=135 Identities=24% Similarity=0.350 Sum_probs=94.8
Q ss_pred ccccCcccEeeCCCCCCCCcCCCC------CccCCCCCcEEeCCCccCCCCCchhhhhccCCcEEEcCCCcCCCcccccc
Q 008876 9 ISLLTSLEVLDLGGLVDLTGIIPP------SIGCLQNLKKLYLYGNKLSGSVPESISKLLKLEELHLHENRLSGTLSSSL 82 (550)
Q Consensus 9 ~~~~~~L~~L~l~~~~~~~~~~~~------~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~ 82 (550)
+...+.++.++++. ..+....|. .+..+++|++|++++|.+++ +| .+..+++|++|++++|.+. ..|..+
T Consensus 14 ~~~~~~l~~l~l~~-~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~ 89 (198)
T 1ds9_A 14 FEERKSVVATEAEK-VELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLD 89 (198)
T ss_dssp HHHTTCCCCTTCSE-EECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHH
T ss_pred HHhcccccCcchhe-eEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchh
Confidence 44555666666655 334444444 67788888888888888774 55 7778888888888888776 456666
Q ss_pred cCCcccchhhccccccCccCchhccCCCCCCEEEcccccCccccc-hhhcCCCCcCeEeccCccccCc
Q 008876 83 GNLKNINQLLMHTNQFTGVIPDSFTNLTNLVRLDLHCNYLNGYIP-EKIGELQLLEQLDFSNNLLRGK 149 (550)
Q Consensus 83 ~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~ 149 (550)
..+++|+.|++++|.+.. .+ .+..+++|++|++++|.+..... ..+..+++|++|++++|.+.+.
T Consensus 90 ~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~ 155 (198)
T 1ds9_A 90 AVADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYND 155 (198)
T ss_dssp HHHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHH
T ss_pred hcCCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccc
Confidence 667888888888887774 33 57777888888888887765432 4677788888888887776543
No 144
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.30 E-value=1.2e-11 Score=104.78 Aligned_cols=88 Identities=26% Similarity=0.287 Sum_probs=52.8
Q ss_pred ccccEEeccCCcccCcCCcccccccccceeeCCCCccceeCCCcCCCCCCCcEEECcCccccccCCCcccCCCcCceeec
Q 008876 432 TGIRFLNLSRNVLEGQIPVSVGRLRSLRSLDLSYNKLGYVLPGSLANESSLETLKLQNNRFTGRIPSEYLKLKKLKELDL 511 (550)
Q Consensus 432 ~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 511 (550)
+++++|++++|.+++..+..|.++++|++|++++|+++.+.+..|.++++|++|++++|.+....+..|..+++|++|++
T Consensus 30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 109 (170)
T 3g39_A 30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWL 109 (170)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEe
Confidence 45556666666665555555666666666666666666555555556666666666666666444444566666666666
Q ss_pred CCcccccc
Q 008876 512 SHNLLVGE 519 (550)
Q Consensus 512 ~~n~~~~~ 519 (550)
++|++...
T Consensus 110 ~~N~~~c~ 117 (170)
T 3g39_A 110 LNNPWDCA 117 (170)
T ss_dssp CSSCBCTT
T ss_pred CCCCCCCC
Confidence 66666543
No 145
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.28 E-value=1.7e-13 Score=119.78 Aligned_cols=139 Identities=27% Similarity=0.328 Sum_probs=113.1
Q ss_pred CCCCCCc------cccccCcccEeeCCCCCCCCcCCCCCccCCCCCcEEeCCCccCCCCCchhhhhccCCcEEEcCCCcC
Q 008876 1 MKGSLSP------SISLLTSLEVLDLGGLVDLTGIIPPSIGCLQNLKKLYLYGNKLSGSVPESISKLLKLEELHLHENRL 74 (550)
Q Consensus 1 ~~~~~~~------~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 74 (550)
++|.+|. ++..+++|++|++++| .+. .+| .+..+++|++|++++|.++ .+|..+..+++|++|++++|.+
T Consensus 30 l~~~~~~l~~l~~~~~~l~~L~~L~ls~n-~l~-~l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l 105 (198)
T 1ds9_A 30 LHGMIPPIEKMDATLSTLKACKHLALSTN-NIE-KIS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQI 105 (198)
T ss_dssp CCBCCTTCCCCHHHHHHTTTCSEEECSEE-EES-CCC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEEC
T ss_pred eccccCcHhhhhHHHhcCCCCCEEECCCC-CCc-ccc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcC
Confidence 3455665 8999999999999994 454 366 8999999999999999998 6788888899999999999998
Q ss_pred CCcccccccCCcccchhhccccccCccCc-hhccCCCCCCEEEcccccCccccch----------hhcCCCCcCeEeccC
Q 008876 75 SGTLSSSLGNLKNINQLLMHTNQFTGVIP-DSFTNLTNLVRLDLHCNYLNGYIPE----------KIGELQLLEQLDFSN 143 (550)
Q Consensus 75 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~----------~l~~l~~L~~L~l~~ 143 (550)
.. .+ .+..+++|++|++++|.+....+ ..+..+++|++|++++|.+....+. .+..+++|+.|+ +
T Consensus 106 ~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~ 181 (198)
T 1ds9_A 106 AS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--G 181 (198)
T ss_dssp CC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--C
T ss_pred Cc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--C
Confidence 84 44 68889999999999999985432 4688999999999999988654332 367788888887 4
Q ss_pred cccc
Q 008876 144 NLLR 147 (550)
Q Consensus 144 ~~~~ 147 (550)
+.+.
T Consensus 182 ~~i~ 185 (198)
T 1ds9_A 182 MPVD 185 (198)
T ss_dssp GGGT
T ss_pred cccC
Confidence 4443
No 146
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.27 E-value=8.4e-12 Score=119.65 Aligned_cols=108 Identities=20% Similarity=0.182 Sum_probs=88.2
Q ss_pred EEeccCC-cccCcCCcccccccccceeeCCC-CccceeCCCcCCCCCCCcEEECcCccccccCCCcccCCCcCceeecCC
Q 008876 436 FLNLSRN-VLEGQIPVSVGRLRSLRSLDLSY-NKLGYVLPGSLANESSLETLKLQNNRFTGRIPSEYLKLKKLKELDLSH 513 (550)
Q Consensus 436 ~L~l~~~-~i~~~~~~~l~~l~~L~~L~l~~-n~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 513 (550)
.++++++ .++. +|. +..+++|++|+|++ |.++.+.+..|.++++|+.|+|++|.+.+..|..|.++++|+.|+|++
T Consensus 12 ~v~~~~~n~l~~-ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 12 GLRCTRDGALDS-LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp CEECCSSCCCTT-TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred EEEcCCCCCCCc-cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 4577776 6764 555 88888899999986 888888778888899999999999999888777888899999999999
Q ss_pred ccccccCCCCCCCCCccccCCCCCCCCCCCCC
Q 008876 514 NLLVGEIPAGKPLSDFPESSFSGNRGLCGKPL 545 (550)
Q Consensus 514 n~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 545 (550)
|.+.+..+..+....+++|++.+|++.|+|++
T Consensus 90 N~l~~~~~~~~~~~~L~~l~l~~N~~~c~c~l 121 (347)
T 2ifg_A 90 NALESLSWKTVQGLSLQELVLSGNPLHCSCAL 121 (347)
T ss_dssp SCCSCCCSTTTCSCCCCEEECCSSCCCCCGGG
T ss_pred CccceeCHHHcccCCceEEEeeCCCccCCCcc
Confidence 99886555555555588999999999999875
No 147
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.25 E-value=3.7e-11 Score=102.06 Aligned_cols=86 Identities=24% Similarity=0.258 Sum_probs=48.7
Q ss_pred ccccEEeccCCcccCcCCcccccccccceeeCCCCccceeCCCcCCCCCCCcEEECcCccccccCCCcccCCCcCceeec
Q 008876 432 TGIRFLNLSRNVLEGQIPVSVGRLRSLRSLDLSYNKLGYVLPGSLANESSLETLKLQNNRFTGRIPSEYLKLKKLKELDL 511 (550)
Q Consensus 432 ~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 511 (550)
++|++|++++|.+++..+..|.++++|+.|+|++|+++.+.+..|.++++|++|++++|.+....+..+..+++|+.|++
T Consensus 33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L 112 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYL 112 (174)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEe
Confidence 44555555555555555555555666666666666665544444555566666666666655433333555666666666
Q ss_pred CCcccc
Q 008876 512 SHNLLV 517 (550)
Q Consensus 512 ~~n~~~ 517 (550)
++|++.
T Consensus 113 ~~N~~~ 118 (174)
T 2r9u_A 113 YNNPWD 118 (174)
T ss_dssp CSSCBC
T ss_pred CCCCcc
Confidence 666554
No 148
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.25 E-value=1.1e-13 Score=133.00 Aligned_cols=143 Identities=22% Similarity=0.227 Sum_probs=65.5
Q ss_pred ccccEEEccCCeeeccCCccc-cCCCCCcEEEccCCccccccccccccCCCCCCCCeEEEeccCCCCCCCCC---CCCCC
Q 008876 354 TQLYSLNLSRNSLVSSIPETI-TNLQDLVLLDLHSNKLTGSISQVFKIGQRFPDGSLTYIDLSDNGFSSGIE---LTGGG 429 (550)
Q Consensus 354 ~~L~~L~l~~~~~~~~~~~~l-~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~---~~~~~ 429 (550)
++|+.|++++|.+.+.....+ ..+++|++|++++|.++..+...+......+.+.|++|++++|.+++... ...+.
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~ 180 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLA 180 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHH
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHh
Confidence 345555555554433221111 12334555555555554433333321111111344444444444322100 00112
Q ss_pred CcccccEEeccCCcccCcC----CcccccccccceeeCCCCccceeC----CCcCCCCCCCcEEECcCccccccC
Q 008876 430 GQTGIRFLNLSRNVLEGQI----PVSVGRLRSLRSLDLSYNKLGYVL----PGSLANESSLETLKLQNNRFTGRI 496 (550)
Q Consensus 430 ~~~~L~~L~l~~~~i~~~~----~~~l~~l~~L~~L~l~~n~i~~~~----~~~l~~l~~L~~L~l~~~~~~~~~ 496 (550)
.+++|++|++++|.+++.. ..++..+++|++|+|++|.|++.. ..++..+++|++|++++|.++...
T Consensus 181 ~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g 255 (372)
T 3un9_A 181 GNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEG 255 (372)
T ss_dssp TCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHH
T ss_pred cCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHH
Confidence 3455666666666655332 344555666777777777666432 222334566777777777666443
No 149
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.19 E-value=4e-09 Score=102.23 Aligned_cols=131 Identities=12% Similarity=0.091 Sum_probs=61.7
Q ss_pred hhhhccccccEEEccCCeeeccCCccccCCCCCcEEEccCCccccccccccccCCCCCCCCeEEEeccCCCCCCCCCCCC
Q 008876 348 AWIGSLTQLYSLNLSRNSLVSSIPETITNLQDLVLLDLHSNKLTGSISQVFKIGQRFPDGSLTYIDLSDNGFSSGIELTG 427 (550)
Q Consensus 348 ~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 427 (550)
..+..+.+++.+.+..+ +.......+..+..|+.+.+..+ ++..+...|... .+|+.+.+..+ + ..+....
T Consensus 211 ~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~-----~~l~~i~l~~~-i-~~i~~~a 281 (379)
T 4h09_A 211 YGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNC-----TALKTLNFYAK-V-KTVPYLL 281 (379)
T ss_dssp TTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTC-----TTCCEEEECCC-C-SEECTTT
T ss_pred cccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCcccccee-----ehhcccccccc-c-eeccccc
Confidence 34455556666665443 23344445555666666666443 333333333322 33444444321 1 1122224
Q ss_pred CCCcccccEEeccCCcccCcCCcccccccccceeeCCCCccceeCCCcCCCCCCCcEEECc
Q 008876 428 GGGQTGIRFLNLSRNVLEGQIPVSVGRLRSLRSLDLSYNKLGYVLPGSLANESSLETLKLQ 488 (550)
Q Consensus 428 ~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~ 488 (550)
|..|.+|+.+.+.++.++.+...+|.++.+|+.++|..+ ++.+...+|.+|++|+++.+-
T Consensus 282 F~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip 341 (379)
T 4h09_A 282 CSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYP 341 (379)
T ss_dssp TTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCC
T ss_pred cccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEEC
Confidence 445555555555555454444455555555555555432 444444555555555555553
No 150
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.16 E-value=1.2e-08 Score=98.77 Aligned_cols=302 Identities=9% Similarity=0.037 Sum_probs=178.9
Q ss_pred CCCCCCccEEEcCCCcccccCCCCccCCCCCcEEEcccCcccCcchhhccCCCCCcEEEecCccccCCCcccccCCCccc
Q 008876 180 PGQMPSLGFLRLQDNNLTGKIPPTFGYLASLRRVSLANNKLEGAIPTSLGNLQDLTELYLNGNQLSGQIPKSISQLSQLI 259 (550)
Q Consensus 180 ~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~ 259 (550)
+....+|+++.+... ++.....+|.++.+|+++.+..+ ++.....+|.++ +|+.+.+..+ +......++.. .+|+
T Consensus 42 ~~~~~~i~~v~ip~~-vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~-~~L~ 116 (379)
T 4h09_A 42 YKDRDRISEVRVNSG-ITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQG-TDLD 116 (379)
T ss_dssp GGGGGGCSEEEECTT-EEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTT-CCCS
T ss_pred cccccCCEEEEeCCC-ccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEeccceecc-CCcc
Confidence 334456777776543 34345556777777777777543 443445566665 5666666443 22233333433 3566
Q ss_pred EEEccCCcccCCCCCcccCCCCccEEEccCCcccCCccchhcccCCCCcEEEeecccccccCCccccCCCCCccEEEccc
Q 008876 260 FLSISRNQIEGPLPSGMFSLQNLQTLDLSFNLLNLSSIPMWMAELPSLSRVYLAGCGIKGKIPEFFRTTPSPLQELDLSV 339 (550)
Q Consensus 260 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~ 339 (550)
.+.+..+-.. .....+.. .+++.+.+...- ... ....+..+..++.+.+.............. .
T Consensus 117 ~i~lp~~~~~-i~~~~F~~-~~l~~~~~~~~v-~~i-~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~------------~ 180 (379)
T 4h09_A 117 DFEFPGATTE-IGNYIFYN-SSVKRIVIPKSV-TTI-KDGIGYKAENLEKIEVSSNNKNYVAENYVL------------Y 180 (379)
T ss_dssp EEECCTTCCE-ECTTTTTT-CCCCEEEECTTC-CEE-CSCTTTTCTTCCEEEECTTCSSEEEETTEE------------E
T ss_pred cccCCCcccc-cccccccc-ceeeeeecccee-ecc-ccchhcccccccccccccccceeeccccee------------c
Confidence 6666543211 11122222 245555544321 100 122334455555555544321111000000 0
Q ss_pred ccCCCCchhhhhccccccEEEccCCeeeccCCccccCCCCCcEEEccCCccccccccccccCCCCCCCCeEEEeccCCCC
Q 008876 340 NHLSGSIPAWIGSLTQLYSLNLSRNSLVSSIPETITNLQDLVLLDLHSNKLTGSISQVFKIGQRFPDGSLTYIDLSDNGF 419 (550)
Q Consensus 340 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 419 (550)
+. .......+..+..+..+.+..... ......+..+..++.+.+..+ +...+...+... ..|+.+.+..+ +
T Consensus 181 ~~-~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~-----~~L~~i~lp~~-v 251 (379)
T 4h09_A 181 NK-NKTILESYPAAKTGTEFTIPSTVK-TVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGM-----KALDEIAIPKN-V 251 (379)
T ss_dssp ET-TSSEEEECCTTCCCSEEECCTTCC-EECTTTTTTCSSCSEEECCTT-CCEECTTTTTTC-----SSCCEEEECTT-C
T ss_pred cc-ccceecccccccccccccccccee-EEeecccccccccceeeeccc-eeEEccccccCC-----ccceEEEcCCC-c
Confidence 00 011122344455666666655432 244556677888999998654 444555555433 68888888765 2
Q ss_pred CCCCCCCCCCCcccccEEeccCCcccCcCCcccccccccceeeCCCCccceeCCCcCCCCCCCcEEECcCccccccCCCc
Q 008876 420 SSGIELTGGGGQTGIRFLNLSRNVLEGQIPVSVGRLRSLRSLDLSYNKLGYVLPGSLANESSLETLKLQNNRFTGRIPSE 499 (550)
Q Consensus 420 ~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~ 499 (550)
..+....+..+.+++.+.+..+ +......+|.++++|+.+.+.++.++.+...+|.+|++|+++.+.++ +..+....
T Consensus 252 -~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~a 328 (379)
T 4h09_A 252 -TSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYA 328 (379)
T ss_dssp -CEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTT
T ss_pred -cEeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHH
Confidence 2344557889999999999754 55567788999999999999999999899999999999999999754 66667778
Q ss_pred ccCCCcCceeecCCc
Q 008876 500 YLKLKKLKELDLSHN 514 (550)
Q Consensus 500 ~~~l~~L~~L~l~~n 514 (550)
|.++.+|+++.+..+
T Consensus 329 F~~C~~L~~i~ip~~ 343 (379)
T 4h09_A 329 FKNCKALSTISYPKS 343 (379)
T ss_dssp TTTCTTCCCCCCCTT
T ss_pred hhCCCCCCEEEECCc
Confidence 999999999998654
No 151
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.13 E-value=7.5e-13 Score=127.13 Aligned_cols=165 Identities=20% Similarity=0.077 Sum_probs=122.9
Q ss_pred ccccccEEEccCCeeeccCCccc----c-CCCCCcEEEccCCccccccccccccCCCCCCCCeEEEeccCCCCCCCCCCC
Q 008876 352 SLTQLYSLNLSRNSLVSSIPETI----T-NLQDLVLLDLHSNKLTGSISQVFKIGQRFPDGSLTYIDLSDNGFSSGIELT 426 (550)
Q Consensus 352 ~~~~L~~L~l~~~~~~~~~~~~l----~-~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 426 (550)
..+.|+.|++++|.++......+ . ..++|++|++++|.++..+...+.... .+|++|++++|.+.+.....
T Consensus 70 ~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L----~~L~~L~Ls~n~l~~~~~~~ 145 (372)
T 3un9_A 70 VLSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVF----LRARKLGLQLNSLGPEACKD 145 (372)
T ss_dssp HHTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHH----HTEEEEECCSSCCCHHHHHH
T ss_pred HHhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHH----HhccHhhcCCCCCCHHHHHH
Confidence 35789999999999876443333 2 237999999999999766554443221 47999999999986532211
Q ss_pred C---C-CCcccccEEeccCCcccCcC----CcccccccccceeeCCCCccceeC----CCcCCCCCCCcEEECcCccccc
Q 008876 427 G---G-GGQTGIRFLNLSRNVLEGQI----PVSVGRLRSLRSLDLSYNKLGYVL----PGSLANESSLETLKLQNNRFTG 494 (550)
Q Consensus 427 ~---~-~~~~~L~~L~l~~~~i~~~~----~~~l~~l~~L~~L~l~~n~i~~~~----~~~l~~l~~L~~L~l~~~~~~~ 494 (550)
. + ...++|++|++++|.+++.. ..++..+++|++|+|++|.+++.. ...+..+++|++|++++|.++.
T Consensus 146 L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~ 225 (372)
T 3un9_A 146 LRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGD 225 (372)
T ss_dssp HHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCH
T ss_pred HHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCH
Confidence 1 1 34678999999999997543 344577899999999999998643 4566778899999999999986
Q ss_pred cC----CCcccCCCcCceeecCCccccccC
Q 008876 495 RI----PSEYLKLKKLKELDLSHNLLVGEI 520 (550)
Q Consensus 495 ~~----~~~~~~l~~L~~L~l~~n~~~~~~ 520 (550)
.. +..+..+++|++|++++|++.+..
T Consensus 226 ~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g 255 (372)
T 3un9_A 226 TAALALARAAREHPSLELLHLYFNELSSEG 255 (372)
T ss_dssp HHHHHHHHHHHHCSSCCEEECTTSSCCHHH
T ss_pred HHHHHHHHHHHhCCCCCEEeccCCCCCHHH
Confidence 43 333456799999999999987543
No 152
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.92 E-value=4.1e-09 Score=100.86 Aligned_cols=89 Identities=25% Similarity=0.222 Sum_probs=54.1
Q ss_pred CCCcccccEEeccC-CcccCcCCcccccccccceeeCCCCccceeCCCcCCCCCCCcEEECcCccccccCCCcccCCCcC
Q 008876 428 GGGQTGIRFLNLSR-NVLEGQIPVSVGRLRSLRSLDLSYNKLGYVLPGSLANESSLETLKLQNNRFTGRIPSEYLKLKKL 506 (550)
Q Consensus 428 ~~~~~~L~~L~l~~-~~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L 506 (550)
+..+++|++|++++ |.+++..+..|.++++|+.|+|++|.++.+.+..|.++++|++|+|++|.+....+..+..++ |
T Consensus 27 l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L 105 (347)
T 2ifg_A 27 LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-L 105 (347)
T ss_dssp SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-C
T ss_pred CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-c
Confidence 44555666666664 666655555666666666666666666666666666666666666666666643333343343 6
Q ss_pred ceeecCCcccc
Q 008876 507 KELDLSHNLLV 517 (550)
Q Consensus 507 ~~L~l~~n~~~ 517 (550)
+.|++.+|++.
T Consensus 106 ~~l~l~~N~~~ 116 (347)
T 2ifg_A 106 QELVLSGNPLH 116 (347)
T ss_dssp CEEECCSSCCC
T ss_pred eEEEeeCCCcc
Confidence 66666666665
No 153
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.78 E-value=3e-09 Score=101.13 Aligned_cols=161 Identities=15% Similarity=0.131 Sum_probs=96.6
Q ss_pred hhhhhccccccEEEccCCeeeccCCccccCCCCCcEEEccCCccccccccccccCCCCCCCCeEEEeccCC--CCCCC--
Q 008876 347 PAWIGSLTQLYSLNLSRNSLVSSIPETITNLQDLVLLDLHSNKLTGSISQVFKIGQRFPDGSLTYIDLSDN--GFSSG-- 422 (550)
Q Consensus 347 ~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~L~~L~l~~~--~~~~~-- 422 (550)
...+..+|+|+.|++++|.-....+ + ..++|++|++..+.++......+... ..++|++|+++.+ ...+.
T Consensus 165 ~~ll~~~P~L~~L~L~g~~~l~l~~--~-~~~~L~~L~L~~~~l~~~~l~~l~~~---~lp~L~~L~L~~~~~~~~~~~~ 238 (362)
T 2ra8_A 165 SPVLDAMPLLNNLKIKGTNNLSIGK--K-PRPNLKSLEIISGGLPDSVVEDILGS---DLPNLEKLVLYVGVEDYGFDGD 238 (362)
T ss_dssp HHHHHTCTTCCEEEEECCBTCBCCS--C-BCTTCSEEEEECSBCCHHHHHHHHHS---BCTTCCEEEEECBCGGGTCCSC
T ss_pred HHHHhcCCCCcEEEEeCCCCceecc--c-cCCCCcEEEEecCCCChHHHHHHHHc---cCCCCcEEEEeccccccccchh
Confidence 3455667777777777663111111 2 26677788877776654443333211 1167777776421 11111
Q ss_pred C----CCCCCCCcccccEEeccCCcccCcCCcccc---cccccceeeCCCCccceeC----CCcCCCCCCCcEEECcCcc
Q 008876 423 I----ELTGGGGQTGIRFLNLSRNVLEGQIPVSVG---RLRSLRSLDLSYNKLGYVL----PGSLANESSLETLKLQNNR 491 (550)
Q Consensus 423 ~----~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~---~l~~L~~L~l~~n~i~~~~----~~~l~~l~~L~~L~l~~~~ 491 (550)
+ .......+++|+.|++.+|.+.+.....+. .+++|++|+|+.|.+++.. +..+..+++|+.|++++|.
T Consensus 239 ~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~ 318 (362)
T 2ra8_A 239 MNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNY 318 (362)
T ss_dssp GGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBB
T ss_pred HHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCc
Confidence 0 111123578999999999888754333333 4788999999999888642 3344567899999999998
Q ss_pred ccccCCCcccC-CCcCceeecCCcc
Q 008876 492 FTGRIPSEYLK-LKKLKELDLSHNL 515 (550)
Q Consensus 492 ~~~~~~~~~~~-l~~L~~L~l~~n~ 515 (550)
++......+.. + ...++++++.
T Consensus 319 i~d~~~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 319 LSDEMKKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp CCHHHHHHHHHHC--CSEEECCSBC
T ss_pred CCHHHHHHHHHHc--CCEEEecCCc
Confidence 87654333332 2 3567787776
No 154
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.72 E-value=1.2e-08 Score=96.91 Aligned_cols=162 Identities=15% Similarity=0.190 Sum_probs=85.2
Q ss_pred cchhcccCCCCcEEEeecccccccCCccccCCCCCccEEEcccccCCCCchhhhh--ccccccEEEccCC--eee-c---
Q 008876 297 IPMWMAELPSLSRVYLAGCGIKGKIPEFFRTTPSPLQELDLSVNHLSGSIPAWIG--SLTQLYSLNLSRN--SLV-S--- 368 (550)
Q Consensus 297 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~--~~~~L~~L~l~~~--~~~-~--- 368 (550)
+...+..+|+|+.|.+.++..... .. + . .++|+.|++..+.+.......+. .+++|+.|+++.+ ... +
T Consensus 164 L~~ll~~~P~L~~L~L~g~~~l~l-~~-~-~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~ 239 (362)
T 2ra8_A 164 LSPVLDAMPLLNNLKIKGTNNLSI-GK-K-P-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDM 239 (362)
T ss_dssp CHHHHHTCTTCCEEEEECCBTCBC-CS-C-B-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCG
T ss_pred HHHHHhcCCCCcEEEEeCCCCcee-cc-c-c-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhH
Confidence 344556677788888776621111 11 1 1 33477777776666533333332 4667777766421 100 0
Q ss_pred -cCCccc--cCCCCCcEEEccCCccccccccccccCCCCCCCCeEEEeccCCCCCCCCCCCCCCCcccccEEeccCCccc
Q 008876 369 -SIPETI--TNLQDLVLLDLHSNKLTGSISQVFKIGQRFPDGSLTYIDLSDNGFSSGIELTGGGGQTGIRFLNLSRNVLE 445 (550)
Q Consensus 369 -~~~~~l--~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~ 445 (550)
.....+ ..+|+|++|++.+|.+...+...+.. ...+++|++|+++.|.+.
T Consensus 240 ~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~---------------------------a~~~~~L~~LdLs~n~L~ 292 (362)
T 2ra8_A 240 NVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLE---------------------------SDILPQLETMDISAGVLT 292 (362)
T ss_dssp GGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHH---------------------------CSSGGGCSEEECCSSCCB
T ss_pred HHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHh---------------------------CccCCCCCEEECCCCCCC
Confidence 000111 13556666666666554322211110 124567777888777776
Q ss_pred CcC----CcccccccccceeeCCCCccceeCCCcCCC-CCCCcEEECcCcc
Q 008876 446 GQI----PVSVGRLRSLRSLDLSYNKLGYVLPGSLAN-ESSLETLKLQNNR 491 (550)
Q Consensus 446 ~~~----~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~-l~~L~~L~l~~~~ 491 (550)
+.. ...+..+++|+.|++++|.+++.....+.. + ...++++++.
T Consensus 293 d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 293 DEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp HHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred hHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc--CCEEEecCCc
Confidence 532 333456788888888888887643333332 1 3567777665
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.52 E-value=9.7e-09 Score=87.98 Aligned_cols=86 Identities=15% Similarity=0.155 Sum_probs=45.6
Q ss_pred ccccEEeccCCcccCc----CCcccccccccceeeCCCCcccee----CCCcCCCCCCCcEEEC--cCccccccC----C
Q 008876 432 TGIRFLNLSRNVLEGQ----IPVSVGRLRSLRSLDLSYNKLGYV----LPGSLANESSLETLKL--QNNRFTGRI----P 497 (550)
Q Consensus 432 ~~L~~L~l~~~~i~~~----~~~~l~~l~~L~~L~l~~n~i~~~----~~~~l~~l~~L~~L~l--~~~~~~~~~----~ 497 (550)
++|++|++++|.+.+. +...+...++|++|+|++|.|++. +..++...++|++|++ ++|.+.... .
T Consensus 65 ~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~ 144 (185)
T 1io0_A 65 TYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIA 144 (185)
T ss_dssp CSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHH
T ss_pred CCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHH
Confidence 3344444444444322 223344445666666666666542 2344555566777777 566665432 2
Q ss_pred CcccCCCcCceeecCCcccc
Q 008876 498 SEYLKLKKLKELDLSHNLLV 517 (550)
Q Consensus 498 ~~~~~l~~L~~L~l~~n~~~ 517 (550)
..+...++|++|++++|.+.
T Consensus 145 ~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 145 NMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHCSSCCEEECCCSSHH
T ss_pred HHHHhCCCcCEEeccCCCCC
Confidence 23344566777777776654
No 156
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.48 E-value=1.3e-08 Score=84.57 Aligned_cols=84 Identities=15% Similarity=0.020 Sum_probs=39.8
Q ss_pred CCeEEEeccCCCCCCCCCCCCCCCcccccEEeccCCc-ccCcCCcccccc----cccceeeCCCCc-cceeCCCcCCCCC
Q 008876 407 GSLTYIDLSDNGFSSGIELTGGGGQTGIRFLNLSRNV-LEGQIPVSVGRL----RSLRSLDLSYNK-LGYVLPGSLANES 480 (550)
Q Consensus 407 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-i~~~~~~~l~~l----~~L~~L~l~~n~-i~~~~~~~l~~l~ 480 (550)
-.|++|++++|.+++..-. .+..+++|+.|++++|. +++.....+..+ ++|++|+|++|. |++..-..+..++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~-~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~ 139 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFD-HMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFR 139 (176)
T ss_dssp CCEEEEEEESCCCCGGGGG-GGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCT
T ss_pred ceEeEEeCcCCCccHHHHH-HhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCC
Confidence 3566666666665442221 23455555555555553 443333333332 245555555552 4443333344455
Q ss_pred CCcEEECcCcc
Q 008876 481 SLETLKLQNNR 491 (550)
Q Consensus 481 ~L~~L~l~~~~ 491 (550)
+|++|++++|+
T Consensus 140 ~L~~L~L~~c~ 150 (176)
T 3e4g_A 140 NLKYLFLSDLP 150 (176)
T ss_dssp TCCEEEEESCT
T ss_pred CCCEEECCCCC
Confidence 55555555554
No 157
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.46 E-value=1.4e-08 Score=87.04 Aligned_cols=120 Identities=13% Similarity=0.134 Sum_probs=65.8
Q ss_pred hhhhccccccEEEccCC-eeeccC----CccccCCCCCcEEEccCCccccccccccccCCCCCCCCeEEEeccCCCCCCC
Q 008876 348 AWIGSLTQLYSLNLSRN-SLVSSI----PETITNLQDLVLLDLHSNKLTGSISQVFKIGQRFPDGSLTYIDLSDNGFSSG 422 (550)
Q Consensus 348 ~~~~~~~~L~~L~l~~~-~~~~~~----~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 422 (550)
..+...+.|++|++++| .+.+.. ...+...++|++|++++|.+.+.+...+...
T Consensus 30 ~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~--------------------- 88 (185)
T 1io0_A 30 RIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEM--------------------- 88 (185)
T ss_dssp HHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHH---------------------
T ss_pred HHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHH---------------------
Confidence 34455666666666666 555422 2334455667777777776665444333221
Q ss_pred CCCCCCCCcccccEEeccCCcccCc----CCcccccccccceeeC--CCCcccee----CCCcCCCCCCCcEEECcCccc
Q 008876 423 IELTGGGGQTGIRFLNLSRNVLEGQ----IPVSVGRLRSLRSLDL--SYNKLGYV----LPGSLANESSLETLKLQNNRF 492 (550)
Q Consensus 423 ~~~~~~~~~~~L~~L~l~~~~i~~~----~~~~l~~l~~L~~L~l--~~n~i~~~----~~~~l~~l~~L~~L~l~~~~~ 492 (550)
+...++|++|++++|.|.+. +..++...++|++|+| ++|.|++. +...+...++|++|++++|.+
T Consensus 89 -----L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 89 -----LKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp -----HHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred -----HHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence 11233455555555555432 2344555667777777 66766653 223344556777777777776
Q ss_pred c
Q 008876 493 T 493 (550)
Q Consensus 493 ~ 493 (550)
.
T Consensus 164 ~ 164 (185)
T 1io0_A 164 G 164 (185)
T ss_dssp H
T ss_pred C
Confidence 5
No 158
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.33 E-value=1.9e-07 Score=77.58 Aligned_cols=85 Identities=13% Similarity=0.049 Sum_probs=53.7
Q ss_pred CCCCcEEeCCCccCCCCCchhhhhccCCcEEEcCCCc-CCCcccccccCC----cccchhhccccc-cCccCchhccCCC
Q 008876 37 LQNLKKLYLYGNKLSGSVPESISKLLKLEELHLHENR-LSGTLSSSLGNL----KNINQLLMHTNQ-FTGVIPDSFTNLT 110 (550)
Q Consensus 37 l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~~~~l----~~L~~L~l~~~~-~~~~~~~~l~~l~ 110 (550)
-.+|++|++++|.+++.....+..+++|+.|+|++|. +++.....+..+ ++|++|++++|. +++.....+..++
T Consensus 60 ~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~ 139 (176)
T 3e4g_A 60 KYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFR 139 (176)
T ss_dssp CCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCT
T ss_pred CceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCC
Confidence 3467777777777766656666677777777777774 543334444443 357777777764 5555555566667
Q ss_pred CCCEEEccccc
Q 008876 111 NLVRLDLHCNY 121 (550)
Q Consensus 111 ~L~~L~l~~~~ 121 (550)
+|++|++++|.
T Consensus 140 ~L~~L~L~~c~ 150 (176)
T 3e4g_A 140 NLKYLFLSDLP 150 (176)
T ss_dssp TCCEEEEESCT
T ss_pred CCCEEECCCCC
Confidence 77777776663
No 159
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.99 E-value=4.2e-06 Score=75.11 Aligned_cols=79 Identities=29% Similarity=0.267 Sum_probs=47.2
Q ss_pred CcccccEEeccCCcccCc--CCcccccccccceeeCCCCccceeCCCcCCCCC--CCcEEECcCccccccCCC-------
Q 008876 430 GQTGIRFLNLSRNVLEGQ--IPVSVGRLRSLRSLDLSYNKLGYVLPGSLANES--SLETLKLQNNRFTGRIPS------- 498 (550)
Q Consensus 430 ~~~~L~~L~l~~~~i~~~--~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~--~L~~L~l~~~~~~~~~~~------- 498 (550)
.+++|++|++++|.+++. ++..+..+++|+.|+|++|.+++. ..+..+. +|++|++++|++.+..|.
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISA 245 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHHH
Confidence 455666666666666642 234455677777777777777653 2233333 777777777777654432
Q ss_pred cccCCCcCceee
Q 008876 499 EYLKLKKLKELD 510 (550)
Q Consensus 499 ~~~~l~~L~~L~ 510 (550)
.+..+|+|+.|+
T Consensus 246 il~~~P~L~~LD 257 (267)
T 3rw6_A 246 IRERFPKLLRLD 257 (267)
T ss_dssp HHHHCTTCCEES
T ss_pred HHHHCcccCeEC
Confidence 244567777664
No 160
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.86 E-value=1.4e-06 Score=73.75 Aligned_cols=66 Identities=21% Similarity=0.141 Sum_probs=34.8
Q ss_pred ccccccccceeeCCCCcccee----CCCcCCCCCCCcEEECcCccc---cc----cCCCcccCCCcCceeecCCccc
Q 008876 451 SVGRLRSLRSLDLSYNKLGYV----LPGSLANESSLETLKLQNNRF---TG----RIPSEYLKLKKLKELDLSHNLL 516 (550)
Q Consensus 451 ~l~~l~~L~~L~l~~n~i~~~----~~~~l~~l~~L~~L~l~~~~~---~~----~~~~~~~~l~~L~~L~l~~n~~ 516 (550)
++...+.|++|+|++|.|++. +.+++...++|++|+|+++.. .. .+...+...+.|++|+++.|.+
T Consensus 93 aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 93 LIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp HHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred HHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence 344455666666666666542 223455556666666665422 21 1222344566666666665543
No 161
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.84 E-value=2.1e-06 Score=77.10 Aligned_cols=92 Identities=24% Similarity=0.298 Sum_probs=65.0
Q ss_pred CCcccccE--EeccCCccc---CcCCcccccccccceeeCCCCcccee--CCCcCCCCCCCcEEECcCccccccCCCccc
Q 008876 429 GGQTGIRF--LNLSRNVLE---GQIPVSVGRLRSLRSLDLSYNKLGYV--LPGSLANESSLETLKLQNNRFTGRIPSEYL 501 (550)
Q Consensus 429 ~~~~~L~~--L~l~~~~i~---~~~~~~l~~l~~L~~L~l~~n~i~~~--~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~ 501 (550)
...+.|+. +++..|... ......-.++++|+.|+|++|+++++ ++..+..+++|+.|+|++|.+... ..+.
T Consensus 138 ~~dp~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~ 215 (267)
T 3rw6_A 138 RSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELD 215 (267)
T ss_dssp GGCHHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGG
T ss_pred CCCcchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhh
Confidence 34444544 455555322 11222235688999999999999873 345556799999999999999864 3344
Q ss_pred CCC--cCceeecCCccccccCCC
Q 008876 502 KLK--KLKELDLSHNLLVGEIPA 522 (550)
Q Consensus 502 ~l~--~L~~L~l~~n~~~~~~~~ 522 (550)
.+. +|++|++++|++.+.+|+
T Consensus 216 ~l~~l~L~~L~L~~Npl~~~~~~ 238 (267)
T 3rw6_A 216 KIKGLKLEELWLDGNSLCDTFRD 238 (267)
T ss_dssp GGTTSCCSEEECTTSTTGGGCSS
T ss_pred hcccCCcceEEccCCcCccccCc
Confidence 444 999999999999987774
No 162
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.83 E-value=1.7e-05 Score=62.83 Aligned_cols=14 Identities=21% Similarity=0.297 Sum_probs=7.9
Q ss_pred cCCCCCCCCCCCCC
Q 008876 532 SSFSGNRGLCGKPL 545 (550)
Q Consensus 532 l~~~~~~~~~~~~~ 545 (550)
+++.||||.|+|++
T Consensus 60 L~L~~NP~~CdC~l 73 (130)
T 3rfe_A 60 AHLGANPWRCDCRL 73 (130)
T ss_dssp EECCSSCCBCSGGG
T ss_pred EEecCCCeeccCcc
Confidence 45556666666654
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.43 E-value=1.5e-05 Score=67.45 Aligned_cols=61 Identities=18% Similarity=0.202 Sum_probs=29.9
Q ss_pred ccccEEeccCCcccCc----CCcccccccccceeeCCCC---ccce----eCCCcCCCCCCCcEEECcCccc
Q 008876 432 TGIRFLNLSRNVLEGQ----IPVSVGRLRSLRSLDLSYN---KLGY----VLPGSLANESSLETLKLQNNRF 492 (550)
Q Consensus 432 ~~L~~L~l~~~~i~~~----~~~~l~~l~~L~~L~l~~n---~i~~----~~~~~l~~l~~L~~L~l~~~~~ 492 (550)
+.|++|+|++|.|.+. +.+++...+.|++|+|++| .+.+ .+.+.+...++|++|+++.+.+
T Consensus 98 ~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 98 PSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp SSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred CccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence 3444444444444422 2233445556666666644 2332 1223344556677776665543
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.24 E-value=0.0072 Score=47.55 Aligned_cols=56 Identities=25% Similarity=0.326 Sum_probs=35.4
Q ss_pred EEeccCCccc-CcCCcccccccccceeeCCCCccceeCCCcCCCCCCCcEEECcCcccc
Q 008876 436 FLNLSRNVLE-GQIPVSVGRLRSLRSLDLSYNKLGYVLPGSLANESSLETLKLQNNRFT 493 (550)
Q Consensus 436 ~L~l~~~~i~-~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~~~ 493 (550)
.++.++..++ ..+|..+ .++|++|+|++|+|+.+.+..|..+++|++|+|.+|++.
T Consensus 12 ~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 4555555554 1233322 235777777777777666666777777777777777664
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=83.37 E-value=2.5 Score=30.93 Aligned_cols=46 Identities=20% Similarity=0.274 Sum_probs=28.3
Q ss_pred cccCcCCcccccccccceeeCCCCccceeCCCcCCCCCCCcEEECcC
Q 008876 443 VLEGQIPVSVGRLRSLRSLDLSYNKLGYVLPGSLANESSLETLKLQN 489 (550)
Q Consensus 443 ~i~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~ 489 (550)
.++.+...+|.+|.+|+++.|-.+ ++.+...+|.+|.+|+.+.+.+
T Consensus 7 ~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 7 PVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred ccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 344455566666777777766653 3445556666677777766654
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=78.02 E-value=2.2 Score=31.26 Aligned_cols=49 Identities=12% Similarity=0.055 Sum_probs=41.1
Q ss_pred CCccceeCCCcCCCCCCCcEEECcCccccccCCCcccCCCcCceeecCCc
Q 008876 465 YNKLGYVLPGSLANESSLETLKLQNNRFTGRIPSEYLKLKKLKELDLSHN 514 (550)
Q Consensus 465 ~n~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n 514 (550)
|..++.+...+|.+|++|+++.|-.+ ++.+....|.++.+|+.+.+.+.
T Consensus 5 g~~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 5 GEPVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCCCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred CCccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence 45667778889999999999999854 66577778999999999999874
No 167
>3p0y_A Epidermal growth factor receptor; beta-sandwich, antigens EGFR, immune system; HET: NAG FUL; 1.80A {Homo sapiens} PDB: 3b2u_A* 3c09_A*
Probab=26.64 E-value=66 Score=27.17 Aligned_cols=13 Identities=15% Similarity=0.552 Sum_probs=7.8
Q ss_pred Cccccccccccee
Q 008876 449 PVSVGRLRSLRSL 461 (550)
Q Consensus 449 ~~~l~~l~~L~~L 461 (550)
+..+..+++++++
T Consensus 56 ~~~Ls~L~~I~EI 68 (214)
T 3p0y_A 56 PQELDILKTVKEI 68 (214)
T ss_dssp GGGGGGGGGCCEE
T ss_pred hhHhhhcCCCEEE
Confidence 4455566677763
Done!