Query 008877
Match_columns 550
No_of_seqs 321 out of 1661
Neff 6.8
Searched_HMMs 46136
Date Thu Mar 28 17:42:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008877.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008877hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF11744 ALMT: Aluminium activ 100.0 4.4E-86 9.4E-91 697.0 39.0 404 47-534 1-406 (406)
2 KOG4711 Predicted membrane pro 100.0 2.9E-66 6.3E-71 564.9 16.0 498 37-543 73-597 (625)
3 TIGR01667 YCCS_YHJK integral m 100.0 2.8E-25 6E-30 251.2 36.3 283 41-365 367-649 (701)
4 TIGR01666 YCCS hypothetical me 99.9 8.7E-25 1.9E-29 246.5 37.6 283 42-367 366-648 (704)
5 PF04632 FUSC: Fusaric acid re 99.9 1.3E-24 2.7E-29 246.0 34.8 239 56-331 1-240 (650)
6 PRK10631 p-hydroxybenzoic acid 99.9 2.5E-22 5.5E-27 223.9 34.0 216 51-298 3-230 (652)
7 PRK11427 multidrug efflux syst 99.9 8.7E-20 1.9E-24 202.6 30.9 218 49-294 343-563 (683)
8 COG1289 Predicted membrane pro 99.7 5.1E-16 1.1E-20 176.9 28.0 185 46-245 344-529 (674)
9 COG4129 Predicted membrane pro 99.7 2.5E-13 5.5E-18 141.0 31.5 164 57-242 10-173 (332)
10 COG1289 Predicted membrane pro 99.6 2.7E-12 5.7E-17 146.6 30.0 215 53-298 7-225 (674)
11 PRK11427 multidrug efflux syst 99.5 2.9E-12 6.2E-17 143.1 29.3 169 52-238 25-201 (683)
12 PF10337 DUF2422: Protein of u 99.5 1.8E-11 3.8E-16 133.8 35.0 260 51-328 10-314 (459)
13 PF13515 FUSC_2: Fusaric acid 99.5 2.2E-13 4.8E-18 122.3 14.6 124 70-210 2-128 (128)
14 PF06081 DUF939: Bacterial pro 99.5 4.9E-13 1.1E-17 123.3 17.0 136 59-214 6-141 (141)
15 PF10334 DUF2421: Protein of u 99.2 9E-09 1.9E-13 102.5 23.7 148 214-374 1-153 (229)
16 PF04632 FUSC: Fusaric acid re 99.1 6.3E-08 1.4E-12 110.1 31.9 174 53-239 336-514 (650)
17 PF12805 FUSC-like: FUSC-like 99.0 6.4E-07 1.4E-11 92.0 28.0 178 192-392 70-252 (284)
18 TIGR01667 YCCS_YHJK integral m 98.7 6.3E-06 1.4E-10 94.5 27.5 280 55-373 6-292 (701)
19 TIGR01666 YCCS hypothetical me 98.6 5.9E-05 1.3E-09 86.4 30.5 174 55-243 6-179 (704)
20 PRK10631 p-hydroxybenzoic acid 98.1 0.0074 1.6E-07 68.8 31.4 161 57-230 353-517 (652)
21 PF11168 DUF2955: Protein of u 96.1 0.2 4.4E-06 46.2 14.4 136 60-213 2-139 (140)
22 TIGR02865 spore_II_E stage II 84.6 93 0.002 36.8 26.7 24 222-245 307-330 (764)
23 PF12732 YtxH: YtxH-like prote 83.7 4.6 0.0001 32.9 6.7 46 197-243 2-47 (74)
24 PF10225 DUF2215: Uncharacteri 80.3 33 0.00072 34.8 12.9 126 111-238 12-141 (249)
25 PF06496 DUF1097: Protein of u 76.1 65 0.0014 29.7 15.4 45 87-132 21-65 (144)
26 PF10011 DUF2254: Predicted me 75.6 51 0.0011 35.3 13.4 19 108-126 45-63 (371)
27 PF06081 DUF939: Bacterial pro 69.5 21 0.00045 32.8 7.6 20 109-128 120-139 (141)
28 PRK12821 aspartyl/glutamyl-tRN 63.3 89 0.0019 34.4 11.7 56 101-158 96-153 (477)
29 PRK11677 hypothetical protein; 62.5 30 0.00064 31.8 7.0 49 198-246 8-57 (134)
30 PF11992 DUF3488: Domain of un 60.1 2.3E+02 0.0049 29.7 14.7 10 87-96 27-36 (325)
31 PRK09776 putative diguanylate 54.9 4.6E+02 0.01 31.7 17.7 34 87-126 26-59 (1092)
32 COG5336 Uncharacterized protei 53.5 50 0.0011 29.2 6.4 29 105-133 45-73 (116)
33 COG4980 GvpP Gas vesicle prote 49.6 63 0.0014 28.9 6.6 45 196-241 7-51 (115)
34 PF06295 DUF1043: Protein of u 49.4 65 0.0014 29.2 7.0 49 197-245 3-52 (128)
35 PF12841 YvrJ: YvrJ protein fa 48.2 43 0.00093 24.0 4.3 32 505-536 6-37 (38)
36 PF03419 Peptidase_U4: Sporula 42.9 81 0.0018 32.5 7.4 18 386-403 226-243 (293)
37 PRK10263 DNA translocase FtsK; 42.9 7.3E+02 0.016 31.4 16.1 14 102-115 67-80 (1355)
38 PF14362 DUF4407: Domain of un 39.8 4.4E+02 0.0095 27.1 22.6 38 190-227 80-118 (301)
39 KOG2322 N-methyl-D-aspartate r 37.7 2.3E+02 0.0051 28.5 9.2 58 31-97 35-95 (237)
40 PF00873 ACR_tran: AcrB/AcrD/A 36.7 4.1E+02 0.0089 32.4 13.2 31 189-219 456-486 (1021)
41 PRK11412 putative uracil/xanth 36.6 4.1E+02 0.0088 29.3 11.9 27 190-216 189-215 (433)
42 PRK10503 multidrug efflux syst 35.1 5.8E+02 0.013 31.4 14.1 29 193-221 469-497 (1040)
43 KOG2568 Predicted membrane pro 34.6 7.1E+02 0.015 28.1 13.2 146 57-220 275-445 (518)
44 KOG4267 Predicted membrane pro 32.8 3E+02 0.0064 24.5 8.0 64 113-180 32-96 (110)
45 PF04286 DUF445: Protein of un 31.7 36 0.00077 35.6 2.7 21 110-130 344-364 (367)
46 COG3105 Uncharacterized protei 31.4 3.2E+02 0.0069 25.0 8.1 49 197-246 12-62 (138)
47 PF14351 DUF4401: Domain of un 30.8 5.1E+02 0.011 27.0 11.2 61 59-122 58-119 (326)
48 COG0670 Integral membrane prot 30.7 5.6E+02 0.012 25.7 11.1 30 188-217 140-169 (233)
49 COG3275 LytS Putative regulato 30.5 8.2E+02 0.018 27.5 13.9 15 110-124 68-82 (557)
50 PF11085 YqhR: Conserved membr 30.0 2.5E+02 0.0055 26.9 7.7 23 96-121 53-75 (173)
51 PF08893 DUF1839: Domain of un 30.0 2.1E+02 0.0045 30.1 7.7 81 314-394 238-318 (319)
52 COG3949 Uncharacterized membra 29.0 1.5E+02 0.0032 31.5 6.6 21 165-185 84-104 (349)
53 PF12805 FUSC-like: FUSC-like 28.4 6.5E+02 0.014 25.6 22.6 26 375-400 205-230 (284)
54 PF13515 FUSC_2: Fusaric acid 28.1 1.1E+02 0.0023 26.7 4.8 32 185-217 28-59 (128)
55 COG4956 Integral membrane prot 28.0 4.7E+02 0.01 27.6 9.8 20 108-127 3-22 (356)
56 TIGR00915 2A0602 The (Largely 27.8 1.2E+03 0.026 28.6 15.5 28 192-219 466-493 (1044)
57 TIGR03480 HpnN hopanoid biosyn 27.2 5.7E+02 0.012 30.6 12.0 23 195-217 832-854 (862)
58 COG5438 Predicted multitransme 26.5 1.8E+02 0.0038 31.4 6.6 71 59-131 149-226 (385)
59 COG4291 Predicted membrane pro 25.6 2.7E+02 0.006 27.4 7.2 19 113-131 24-42 (228)
60 KOG3817 Uncharacterized conser 24.7 1.5E+02 0.0032 31.8 5.6 110 110-220 137-250 (452)
61 TIGR02849 spore_III_AD stage I 24.1 1.3E+02 0.0028 26.3 4.3 35 507-541 5-39 (101)
62 COG4129 Predicted membrane pro 24.0 8.8E+02 0.019 25.7 23.8 31 106-136 6-36 (332)
63 PF07907 YibE_F: YibE/F-like p 23.7 2.3E+02 0.0049 28.7 6.7 70 59-129 21-96 (244)
64 COG3448 CBS-domain-containing 23.6 4.5E+02 0.0098 27.7 8.7 28 106-133 78-105 (382)
65 COG4980 GvpP Gas vesicle prote 23.0 82 0.0018 28.2 2.9 25 222-246 61-85 (115)
66 PF01988 VIT1: VIT family; In 22.3 4.1E+02 0.0088 26.0 8.1 29 102-130 128-156 (213)
67 PRK09823 putative inner membra 22.1 6.4E+02 0.014 23.4 9.3 91 109-215 12-105 (160)
68 PF06123 CreD: Inner membrane 21.2 6.1E+02 0.013 28.0 9.8 43 56-98 293-337 (430)
69 PF03176 MMPL: MMPL family; I 21.1 9.1E+02 0.02 24.8 11.1 25 192-216 272-296 (333)
70 KOG2927 Membrane component of 20.9 1E+02 0.0022 32.8 3.6 8 191-198 234-241 (372)
71 TIGR00930 2a30 K-Cl cotranspor 20.8 1.6E+03 0.034 27.5 15.5 176 23-216 69-251 (953)
72 PLN03140 ABC transporter G fam 20.5 9.4E+02 0.02 30.9 12.5 42 88-129 631-673 (1470)
73 PRK11715 inner membrane protei 20.5 5.8E+02 0.013 28.2 9.5 43 56-98 299-343 (436)
No 1
>PF11744 ALMT: Aluminium activated malate transporter; InterPro: IPR020966 This entry represents an malate transporter which has been is identified as being critical for aluminium tolerance in Arabidopsis thaliana [].; GO: 0010044 response to aluminum ion
Probab=100.00 E-value=4.4e-86 Score=697.01 Aligned_cols=404 Identities=45% Similarity=0.771 Sum_probs=371.6
Q ss_pred HHHhhcCchhHHHHHHHHHHHHHHHHHHHhhccccccCCCchHHhHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHH
Q 008877 47 WEFAREDSNRVKFSFKVGLAVLLVSLLILFRAPYEIFGTNIIWSILTVAVMFEYTVGATFNRGFNRALGSLLAGILAIAV 126 (550)
Q Consensus 47 ~~~~~~d~~~~~~alK~glA~~La~ll~~l~~l~~~~g~~~~WaviTvvvV~~ptvG~tl~kg~~R~lGTllG~~la~~~ 126 (550)
|+++++||+|++|++|+|+|++|++++++..++|+.+|.+++||++||++||+||+|+|+.||++|++||++||++|+++
T Consensus 1 w~~g~~d~rr~~~~lkvglal~lvsl~~~~~~~~~~~~~~~~WavlTVvvvfe~tvGatl~KG~nR~lGTl~aG~La~~~ 80 (406)
T PF11744_consen 1 WKFGKDDPRRVIHSLKVGLALTLVSLLYFVGPLYDGFGQNAMWAVLTVVVVFEPTVGATLSKGLNRGLGTLLAGILAFGV 80 (406)
T ss_pred CcccccCcchhhhhHHHHHHHHHHHHHHHhhhhhhhhhhcchHHHhhhHhhccccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcccchhhHHHHHHHHHHHHHHHhhhhhhccccc-chhHHHHHHHHHHHHHHcccCCCchhHHHHHHHHHHHHHHH
Q 008877 127 AQFALSTGRVAEPIIIGISIFLIGAVTSFMKLWPSLVP-YEYGFRVILFTYCLIIVSGYRMGNPIRTSMDRLYSIAIGGF 205 (550)
Q Consensus 127 ~~l~~~~g~~~~~i~igl~vfl~~~~~t~~r~~p~lk~-~~yg~~ia~lT~~lV~vs~~~~~~~~~~A~~R~~~I~iGi~ 205 (550)
.+++...|...+++++++++|+++++++|.|++|.+|+ |+||+.+|++||++|++++|++++.+.+|.+|+..|++|++
T Consensus 81 ~~la~~~g~~~~~~~i~~~vFi~~~~atf~r~~P~~k~rydYg~~Vf~LTf~lV~vs~yr~~~~~~~A~~R~~~I~iGv~ 160 (406)
T PF11744_consen 81 SWLASLSGDPGEPIVIGISVFIIGFIATFVRFIPKIKARYDYGGLVFILTFCLVAVSGYRTDEFLMLAVWRLLTIVIGVA 160 (406)
T ss_pred HHHHHhcCccchhHHHHHHHHHHHHHHHHHHhchhhhhhhhHHHHHHHHHHHhheeecCCcchHHHHHHHHHHHHHHHHH
Confidence 99988777656789999999999999999999999998 99999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCcccccccCCCCChhHHHHHHHHHHhHHHHHH
Q 008877 206 VAVLVNVLVFPIWAGEQLHKELVNSFNSLADSLEECVKKYLEDDGLDHPDFTKTLMDEFPDEPAYKKCKNTLNSSAKLES 285 (550)
Q Consensus 206 iallV~~li~P~~a~~~L~~~la~~l~~la~~l~~~v~~yl~~~~~e~~~~~~k~l~~~~~~~l~~~~r~~l~s~~~les 285 (550)
+|++||++|||.|++++||+.++++++++++++++|+++|+... +++ .. +..+..+++++++|++++++++++|+
T Consensus 161 i~l~vsi~IfPvwAg~~Lh~~~a~~leklA~~le~~v~~y~~~~--~~~-~~--~~~~~~~~~~~~~yk~vl~Sk~~ees 235 (406)
T PF11744_consen 161 ICLLVSIFIFPVWAGEDLHKLTAKNLEKLANSLEGCVEEYFKCS--EDE-IL--DYQQESDDPLLQGYKSVLNSKSQEES 235 (406)
T ss_pred HHHHHHHheeechhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--hhc-cc--ccccccccHHHHhhhHHhCCcccHHH
Confidence 99999999999999999999999999999999999999999654 221 00 01122678899999999999999999
Q ss_pred HHhhhhhCCCCCCCcccCCChhHHHHHHHHHHHHHHHHHHHHHhhhcccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008877 286 LSISAKWEPPHGRFRHFFYPWSKYVKVGAVLRYCAYEVMALHGVLHSEIQAPYNLRVTFQSEIQEVTSQAAELVRNLGKD 365 (550)
Q Consensus 286 L~~~a~~Ep~~gr~~~~~~P~~~Y~~l~~~lr~~a~~l~aL~~~l~s~~qap~~lr~~f~~~l~~l~~e~~~vL~~La~~ 365 (550)
|+++|+|||+||+|+++ |||++|+|+++.+|||+|++++||+|+++++|+|.++|+.|+++|.+++.|+.++|++|+.+
T Consensus 236 L~~~A~WEP~HG~f~f~-~Pw~~Y~kig~~lR~cay~v~AL~gcl~seiq~p~~~r~~~~~~~~~~~~e~~kvLrel~~~ 314 (406)
T PF11744_consen 236 LANFARWEPPHGRFRFR-HPWKQYLKIGALLRHCAYCVEALHGCLNSEIQAPPELRQKFQEECTRVSSESAKVLRELSNS 314 (406)
T ss_pred HhhhhhhcccccCCccC-CcHHHHHHHHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999988 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcccCCch-HHHHHHHHHHHHHHHhhhhhccccccccCCCCCCCCCCCCcccccccchhhhhhhccccccccccCCCCC
Q 008877 366 IGNMKRSVK-TCLLKRLHSSTERLQGSIDMHSYLLTTASCDPPENSKPFPKLFELSNDQQADAESESNHDLEKDSDLTTP 444 (550)
Q Consensus 366 l~~~~~~~~-~~~~~~l~~a~e~Lq~~l~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 444 (550)
+++|+++++ ++++.++++|+|+||.+|+.++|||+++++-. .
T Consensus 315 ik~m~~~~~~~~~~~~~~~A~~~Lq~~l~~~~~ll~~s~~~~-------------------------~------------ 357 (406)
T PF11744_consen 315 IKTMTKSSSIDDHVANLKEAAEDLQSKLDSQSYLLLNSESPE-------------------------R------------ 357 (406)
T ss_pred HHhcccCCCchhHHHHHHHHHHHHHHHHHhCCccccCCchhh-------------------------h------------
Confidence 999999998 89999999999999999999999999987400 0
Q ss_pred CCCCCCCChhhhhhhhhhhHHHhhhhhccCCCCCcchhhhhhcCCCCCCchhhhhhhhhhhcchHHHHHHHHHHHHHHHH
Q 008877 445 KTFSGTLPPEFAAQAESYHETVRKQSRRLHSWPSREVDAFEEEGGLGVDSLPRMRALESTAALSLATFTSLLIEFVARLD 524 (550)
Q Consensus 445 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~sllie~v~~~~ 524 (550)
+...++.+ .+.+.+++|++++||+|||||||||+|+|+|
T Consensus 358 ----------------------------~~~~~~~~-------------~~~~~~~~~~~~~l~lat~aSlLie~v~r~~ 396 (406)
T PF11744_consen 358 ----------------------------SFLRPQSS-------------KEAEWTSYELLEALPLATFASLLIEFVARLE 396 (406)
T ss_pred ----------------------------hhcccccc-------------ccccccchhHHHHhhHHHHHHHHHHHHHHHH
Confidence 00011111 1235688999999999999999999999999
Q ss_pred HHHHHHHHHh
Q 008877 525 HLAEAVDELS 534 (550)
Q Consensus 525 ~~~~~~~el~ 534 (550)
+|||+|||||
T Consensus 397 ~iv~~v~eLa 406 (406)
T PF11744_consen 397 NIVEAVEELA 406 (406)
T ss_pred HHHHHHHhhC
Confidence 9999999996
No 2
>KOG4711 consensus Predicted membrane protein [General function prediction only]
Probab=100.00 E-value=2.9e-66 Score=564.90 Aligned_cols=498 Identities=36% Similarity=0.551 Sum_probs=403.7
Q ss_pred hhhhHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHhhccccccCCCchHHhHHHHHhhccChHHHHHHHHHHHHHH
Q 008877 37 FSIKAWVWKVWEFAREDSNRVKFSFKVGLAVLLVSLLILFRAPYEIFGTNIIWSILTVAVMFEYTVGATFNRGFNRALGS 116 (550)
Q Consensus 37 ~~~~~~~~~~~~~~~~d~~~~~~alK~glA~~La~ll~~l~~l~~~~g~~~~WaviTvvvV~~ptvG~tl~kg~~R~lGT 116 (550)
.+++...+..|+.+..||++.+|++|+|+|++|++++++..++|+.+|.+++|+++|+++|+++++|+|+.||++|.+||
T Consensus 73 ~kv~~~~~~~~~~g~~dprrviha~KvglaltL~S~~y~~~~~~~~ig~~~~wai~tvvvv~e~svgatl~kglnr~v~t 152 (625)
T KOG4711|consen 73 AKVSKIARNLWEVGKEDPRRVIHAFKVGLALTLVSFLYFMKPLYKGIGVNALWAILTVVVVFEFSVGATLSKGLNRAVGT 152 (625)
T ss_pred HHHHHHHhhhhhcCCCChhhhhhhhhccchhhhhhheeeccccccccchhhhheeeEEEEEEEeccchHHHHhHHHHHHH
Confidence 57788889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHhhhhhhcccccchhHHHHHHHHHHHHHHcccCCCchhHHHHHH
Q 008877 117 LLAGILAIAVAQFALSTGRVAEPIIIGISIFLIGAVTSFMKLWPSLVPYEYGFRVILFTYCLIIVSGYRMGNPIRTSMDR 196 (550)
Q Consensus 117 llG~~la~~~~~l~~~~g~~~~~i~igl~vfl~~~~~t~~r~~p~lk~~~yg~~ia~lT~~lV~vs~~~~~~~~~~A~~R 196 (550)
+.+|.+|+.+.++....|...+++.++.++|+.++.++|.||+|++|+|+|++++|.+||+++.+++++.+.+++.|.+|
T Consensus 153 L~ag~l~l~~~~la~~~g~~~~~i~~~~~vF~~~~~~ty~~f~p~iK~y~y~~lIf~ltf~l~~vs~~r~~~~~~~a~~R 232 (625)
T KOG4711|consen 153 LSAGGLALGIERLAEISGKDNESIFIGITVFIAGAKATYSLFFPYIKAYEYGFLIFILTFCLVEVSGYRSDYFLELALQR 232 (625)
T ss_pred hhhhhhhhhhHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhchhhhccchhhhHHHHHhhhheecccchhHHHHHHHHH
Confidence 99999999999888777755568899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHHH-------HHHHhhccCCCCCCcccccccCC-C-CCh
Q 008877 197 LYSIAIGGFVAVLVNVLVFPIWAGEQLHKELVNSFNSLADSLEE-------CVKKYLEDDGLDHPDFTKTLMDE-F-PDE 267 (550)
Q Consensus 197 ~~~I~iGi~iallV~~li~P~~a~~~L~~~la~~l~~la~~l~~-------~v~~yl~~~~~e~~~~~~k~l~~-~-~~~ 267 (550)
+.+|.+|..+|++|++|+||.||+++||+..+.+++.++.++++ +.++|. +.++..++++.... . .++
T Consensus 233 l~~i~~g~~vcliis~f~~PiwAgedlh~l~~~n~~~~a~sleg~~~~~~~~~~~y~---~~~~i~~~s~~~~~~s~~~~ 309 (625)
T KOG4711|consen 233 LLLIVIGGGVCLIISRFIFPIWAGEDLHKLDSKNFKNLASSLEGRKFTASCFNGEYF---CVEKIEILSIPTFYKSAAWY 309 (625)
T ss_pred HHHHhhCcceeEEEEEEEeeccchhhhhhhhhhhhhhhhhhhcchhhhhhhhcchhe---eehhhhhcchhhhhhhcchh
Confidence 99999999999999999999999999999999999999999996 555554 23332334333332 1 267
Q ss_pred hHHHHHHHHHHhHHHHHHHHhhhhhCCCCC-CCcccCCChhHHHHHHHHHHHHHHHHHHHHHhhhcccCCChhHHHHHHH
Q 008877 268 PAYKKCKNTLNSSAKLESLSISAKWEPPHG-RFRHFFYPWSKYVKVGAVLRYCAYEVMALHGVLHSEIQAPYNLRVTFQS 346 (550)
Q Consensus 268 ~l~~~~r~~l~s~~~lesL~~~a~~Ep~~g-r~~~~~~P~~~Y~~l~~~lr~~a~~l~aL~~~l~s~~qap~~lr~~f~~ 346 (550)
+.+++|+++++++.+++.++++|.|||+|| .++++ |||++|.+++..+|+|++++++||+|+.+++|+|.+++..|..
T Consensus 310 ~~~~Gy~svl~s~s~ee~l~~~A~Wep~hG~~~~f~-~Pw~~Yvk~~~~~r~ca~~i~alh~~l~s~~qap~~~~~~~~~ 388 (625)
T KOG4711|consen 310 PLYNGYWSVLQSKSQEERLANFAIWEPPHGPYFTFR-HPWKNYVKLGGALRQCAFIIMALHGCLLSEIQAPRDLRNKFRL 388 (625)
T ss_pred hhhcchhHHhhhhhHHHHHHHHheecCCCCCceeee-cchhHeeehhhHHHHHHHHHHHhcccccccccCcHHHHHHHHH
Confidence 889999999999999999999999999999 44555 9999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccCCch--HHHHHHHHHHHHHHHhhhhhccccccccCCCCCCCCCCCCcccccccchh
Q 008877 347 EIQEVTSQAAELVRNLGKDIGNMKRSVK--TCLLKRLHSSTERLQGSIDMHSYLLTTASCDPPENSKPFPKLFELSNDQQ 424 (550)
Q Consensus 347 ~l~~l~~e~~~vL~~La~~l~~~~~~~~--~~~~~~l~~a~e~Lq~~l~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (550)
+|++++.++.++++.++.++++|+++++ +.+...++.|.++||.+|+.+|++++++++|...|.....+.....+.+.
T Consensus 389 ~l~rva~e~~kvl~~~~~~~~~~~~~s~~~~~~~~~~~~A~~~L~~~ids~p~l~v~~~~~~~~~~~~~~~~~~~~~~e~ 468 (625)
T KOG4711|consen 389 TLRRVAIEISKVLRPFRAKVELMYKLSSALDILLQYVTVADRELQRNIDSNPTLLVNSESWISSNLQAARELLNEVNHEP 468 (625)
T ss_pred HHHHhhHHHHHHHHHHHHHHHhhhccCchhhHHHHHHHHHHHHHHhhccCcchHhhcccchhhhhHHHHHHHhhhhccch
Confidence 9999999999999999999999999988 77899999999999999999999999999997766543222211111111
Q ss_pred h-------hhhhccccccccccCCCCCCCCCCCCChhhhhhhhhhhHHH-----hhhhhccCCCCCcchhhhhhcCCCCC
Q 008877 425 A-------DAESESNHDLEKDSDLTTPKTFSGTLPPEFAAQAESYHETV-----RKQSRRLHSWPSREVDAFEEEGGLGV 492 (550)
Q Consensus 425 ~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~ 492 (550)
+ ++-++....+.+.-... .+ ..+.++......++... ..+..+..+||+...++-+.+..-.+
T Consensus 469 ~~~~~~~~ek~~~~~~~~~~~~~~~--~~---~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~n~~~s~~~~~~~~ 543 (625)
T KOG4711|consen 469 NLKGTFPVEKYNELIHKLLSLGILL--EV---GTRFGNWDDAKLKETLRRLRKDSVSSVNAVSYISSNSIRSKNPIPRVV 543 (625)
T ss_pred hhcccccchhHHHHHHHhhcchhhh--hc---cccccchhhHHHHHhhcccccchhhhhhhhhhhhhcccccCCCCcccc
Confidence 1 01111111111100000 00 00000000011111110 12335667788776542211111111
Q ss_pred Cch--hhhhhhhhhhcchHHHHHH-HHHHHHHHHHHHHHHHHHHhhccCCCCCC
Q 008877 493 DSL--PRMRALESTAALSLATFTS-LLIEFVARLDHLAEAVDELSKLAKFKHEG 543 (550)
Q Consensus 493 ~~~--~~~~~~~~~~~l~~~~~~s-llie~v~~~~~~~~~~~el~~~a~f~~~~ 543 (550)
+.+ ...+.+|+.++|++|||+| +|+|+|||+|++|++++||+++|+|+++.
T Consensus 544 p~~~~~~~~~~~~se~l~~a~fas~ll~~~~arl~~vv~~~~el~~~a~f~~~~ 597 (625)
T KOG4711|consen 544 PILSRATSKSYESSEALNLATFASNLLLEFVARLDNVVSAVEELSDKANFKEYD 597 (625)
T ss_pred ccccccccccccCchhcCcccccchHHHHHHHHHhhhhhhhhhhhhhhhhcccc
Confidence 112 2348899999999999999 99999999999999999999999999754
No 3
>TIGR01667 YCCS_YHJK integral membrane protein, YccS/YhfK family. TMHMM on members of this model shows a consensus of 11 transmembrane helices separated into two clusters, an N-terminal cluster of 6 and a central cluster of 5. This would indicate two non-membrane domains one on each side of the membrane
Probab=99.95 E-value=2.8e-25 Score=251.16 Aligned_cols=283 Identities=16% Similarity=0.191 Sum_probs=205.7
Q ss_pred HHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHhhccccccCCCchHHhHHHHHhhccChHHHHHHHHHHHHHHHHHH
Q 008877 41 AWVWKVWEFAREDSNRVKFSFKVGLAVLLVSLLILFRAPYEIFGTNIIWSILTVAVMFEYTVGATFNRGFNRALGSLLAG 120 (550)
Q Consensus 41 ~~~~~~~~~~~~d~~~~~~alK~glA~~La~ll~~l~~l~~~~g~~~~WaviTvvvV~~ptvG~tl~kg~~R~lGTllG~ 120 (550)
....++...+..++..++||+|++++++++++++.+.++ +++||+++|+++|++|+.|+|+.|+++|++||++|+
T Consensus 367 ~~~~~l~~~l~~~S~~fRhAlR~ala~~~a~~i~~~l~l-----~~gyWi~lTv~~V~qP~~~~T~~R~~~Ri~GTl~G~ 441 (701)
T TIGR01667 367 DILPRLKSHLTPESPLFRHAVRLSLVVMLGYAILMGTAL-----HLGYWILLTTLFVCQPNYGATRLRLVQRIIGTVVGL 441 (701)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHhCC-----CcchHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHH
Confidence 344567777888998999999999999999999988887 899999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHhhhhhhcccccchhHHHHHHHHHHHHHHcccCCCchhHHHHHHHHHH
Q 008877 121 ILAIAVAQFALSTGRVAEPIIIGISIFLIGAVTSFMKLWPSLVPYEYGFRVILFTYCLIIVSGYRMGNPIRTSMDRLYSI 200 (550)
Q Consensus 121 ~la~~~~~l~~~~g~~~~~i~igl~vfl~~~~~t~~r~~p~lk~~~yg~~ia~lT~~lV~vs~~~~~~~~~~A~~R~~~I 200 (550)
++|+++.++...+. . .+.+.+ ++++++. .++..+|++.++++|..+++.......+.+++++.|++++
T Consensus 442 llg~~l~~l~p~~~--~---~l~l~v-~~~~~~~------~~~~~~Y~~a~~fiT~~vll~~~l~~~~~~~~a~~Rl~DT 509 (701)
T TIGR01667 442 VIGVALHFLIPSLE--G---QLTLMV-ITGVAFF------AFRSKNYGWATVFITLLVLLCFNLLGLDGEQYILPRLIDT 509 (701)
T ss_pred HHHHHHHHHcCcHH--H---HHHHHH-HHHHHHH------HHHHhhHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHH
Confidence 99998766654322 1 111111 1122111 1223568888888887555432222224678899999999
Q ss_pred HHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCcccccccCCCCChhHHHHHHHHHHhH
Q 008877 201 AIGGFVAVLVNVLVFPIWAGEQLHKELVNSFNSLADSLEECVKKYLEDDGLDHPDFTKTLMDEFPDEPAYKKCKNTLNSS 280 (550)
Q Consensus 201 ~iGi~iallV~~li~P~~a~~~L~~~la~~l~~la~~l~~~v~~yl~~~~~e~~~~~~k~l~~~~~~~l~~~~r~~l~s~ 280 (550)
+|||+++++++.++||.|.++.+++.+.+.++..++|+..+++.|..++. .+.......|++.++.
T Consensus 510 liG~~iA~~~~~llwP~w~~~~l~~~~~~al~a~~~yl~~il~~~~~~~~--------------~~~~yr~aRr~a~~a~ 575 (701)
T TIGR01667 510 LIGCLIAWGAVSYLWPDWQSRLLRKMLHDALEANQRYLRLILSQYPQGKP--------------DDLAYRIARRNAHNTD 575 (701)
T ss_pred HHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC--------------chhHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998864421 1222345666777888
Q ss_pred HHHHHHHhhhhhCCCCCCCcccCCChhHHHHHHHHHHHHHHHHHHHHHhhhcccCCChhHHHHHHHHHHHHHHHHHHHHH
Q 008877 281 AKLESLSISAKWEPPHGRFRHFFYPWSKYVKVGAVLRYCAYEVMALHGVLHSEIQAPYNLRVTFQSEIQEVTSQAAELVR 360 (550)
Q Consensus 281 ~~lesL~~~a~~Ep~~gr~~~~~~P~~~Y~~l~~~lr~~a~~l~aL~~~l~s~~qap~~lr~~f~~~l~~l~~e~~~vL~ 360 (550)
+.+++..+.+..||++.+ ..++..-.+....+.+...+.+|... ......+ .+...+.+.++.+.+.|+
T Consensus 576 a~l~~~~~~m~~EP~~~~-----~~~~~~~~ll~~~~~ll~~isal~a~-r~~~~~~-----~~~~~~~~~~~~~~~~l~ 644 (701)
T TIGR01667 576 AALSTTLSNMMQEPAFNS-----HYLEDGFRLLTLSHTLLSYISALGAH-RERLLNP-----ELAAELLQACEIVAKAIQ 644 (701)
T ss_pred HHHHHHHHHHHhCCCCch-----hhHHHHHHHHHHHHHHHHHHHHHHhc-ccccCCh-----hHHHHHHHHHHHHHHHHH
Confidence 889999999999998765 23444444555555566666665421 1111222 334455566666667777
Q ss_pred HHHHH
Q 008877 361 NLGKD 365 (550)
Q Consensus 361 ~La~~ 365 (550)
.+...
T Consensus 645 ~~~~~ 649 (701)
T TIGR01667 645 RCQAR 649 (701)
T ss_pred HHHHh
Confidence 66665
No 4
>TIGR01666 YCCS hypothetical membrane protein, TIGR01666. This model represents a clade of sequences from gamma and beta proteobacteria. These proteins are 700 amino acids long and many have been annotated as putative membrane proteins. The gene from Salmonella has been annotated as a putative efflux transporter. The gene from E. coli has the name yccS.
Probab=99.95 E-value=8.7e-25 Score=246.52 Aligned_cols=283 Identities=17% Similarity=0.166 Sum_probs=209.4
Q ss_pred HHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHhhccccccCCCchHHhHHHHHhhccChHHHHHHHHHHHHHHHHHHH
Q 008877 42 WVWKVWEFAREDSNRVKFSFKVGLAVLLVSLLILFRAPYEIFGTNIIWSILTVAVMFEYTVGATFNRGFNRALGSLLAGI 121 (550)
Q Consensus 42 ~~~~~~~~~~~d~~~~~~alK~glA~~La~ll~~l~~l~~~~g~~~~WaviTvvvV~~ptvG~tl~kg~~R~lGTllG~~ 121 (550)
..+++.+.++.|+..++||+|++++++++++++.+.++ +++||+++|+++|++|+.|+|..|+.+|++||++|++
T Consensus 366 ~~~~l~~~l~~~S~~fRhAlRlalal~~a~~i~~~l~l-----~~gyWi~LTv~~V~qP~~~~T~~R~~~Ri~GTllG~~ 440 (704)
T TIGR01666 366 IWARIFSHFTFESPLFRHAVRLSIVLFLGYAIIQFFGF-----NLGYWILLTTLFVCQPNYSATKVRLRQRIIGTLLGVV 440 (704)
T ss_pred HHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHhCC-----CCCchHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHH
Confidence 33467777888999999999999999999999998887 8999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcccchhhHHHHHHHHHHHHHHHhhhhhhcccccchhHHHHHHHHHHHHHHcccCCCchhHHHHHHHHHHH
Q 008877 122 LAIAVAQFALSTGRVAEPIIIGISIFLIGAVTSFMKLWPSLVPYEYGFRVILFTYCLIIVSGYRMGNPIRTSMDRLYSIA 201 (550)
Q Consensus 122 la~~~~~l~~~~g~~~~~i~igl~vfl~~~~~t~~r~~p~lk~~~yg~~ia~lT~~lV~vs~~~~~~~~~~A~~R~~~I~ 201 (550)
+|.++.++..... ...+++ + +.+.++. .++..+|++.++++|..++++... .++.+..+..|+++++
T Consensus 441 lg~~ll~l~p~~~--~~l~li---v-~~~~l~~------~~~~~~Y~~a~~fiT~~vll~~~l-~g~~~~~~~~Rl~dTl 507 (704)
T TIGR01666 441 IGSPLLYFNPSLE--LQLVLV---V-LTGVLFF------AFRSNNYSFATFFITLLVLLCFNV-LGEGAAVLLPRLLDTL 507 (704)
T ss_pred HHHHHHHHhccHH--HHHHHH---H-HHHHHHH------HHHHHhHHHHHHHHHHHHHHHHHc-ccchHHHHHHHHHHHH
Confidence 9998776654321 111111 1 1121111 112256777777888765544322 2347788999999999
Q ss_pred HHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCcccccccCCCCChhHHHHHHHHHHhHH
Q 008877 202 IGGFVAVLVNVLVFPIWAGEQLHKELVNSFNSLADSLEECVKKYLEDDGLDHPDFTKTLMDEFPDEPAYKKCKNTLNSSA 281 (550)
Q Consensus 202 iGi~iallV~~li~P~~a~~~L~~~la~~l~~la~~l~~~v~~yl~~~~~e~~~~~~k~l~~~~~~~l~~~~r~~l~s~~ 281 (550)
||++++++++.++||.|.++++++.+++.++..++|++.+++.|..++. .+.......|++.++.+
T Consensus 508 IG~~iAl~a~~li~P~w~~~~l~~~~~~al~a~~~Yl~~vl~~~~~g~~--------------~~~~yr~aRR~a~~~~a 573 (704)
T TIGR01666 508 IGCAIAWAAVSYIWPDWQYLQLDKVSHQALRANAVYLLHIISQYQFGKS--------------DDLKYRIARRNAHNYDA 573 (704)
T ss_pred HHHHHHHHHHHHhCcchHHhHHHHHHHHHHHHHHHHHHHHHHHhccCCc--------------chhHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999998875431 11223466778888888
Q ss_pred HHHHHHhhhhhCCCCCCCcccCCChhHHHHHHHHHHHHHHHHHHHHHhhhcccCCChhHHHHHHHHHHHHHHHHHHHHHH
Q 008877 282 KLESLSISAKWEPPHGRFRHFFYPWSKYVKVGAVLRYCAYEVMALHGVLHSEIQAPYNLRVTFQSEIQEVTSQAAELVRN 361 (550)
Q Consensus 282 ~lesL~~~a~~Ep~~gr~~~~~~P~~~Y~~l~~~lr~~a~~l~aL~~~l~s~~qap~~lr~~f~~~l~~l~~e~~~vL~~ 361 (550)
.+++..+.+.-||++.+ ..++.--++....+.+...+.+|... +..+..+ .+...+.+.+..+...|..
T Consensus 574 ~l~~~~~~m~~EP~~~~-----~~~~~~~~ll~~~~~llsyisaLg~~-r~~~~~~-----~~~~~~~~~~~~~~~~l~~ 642 (704)
T TIGR01666 574 ALSTTVSNMNNEPVKYK-----AYLQKGFRLLKLNHSLLSYISALGAH-RDRLKNL-----QQTAQFLDGFYPVAKKLIY 642 (704)
T ss_pred HHHHHHHHHHhCCCcch-----hhHHHHHHHHHHHHHHHHHHHHHHhC-HhhCCCh-----HHHHHHHHHHHHHHHHHHH
Confidence 99999999999998765 34554444555555555555554321 1112212 3445667777788888888
Q ss_pred HHHHhh
Q 008877 362 LGKDIG 367 (550)
Q Consensus 362 La~~l~ 367 (550)
+...+.
T Consensus 643 ~~~~~~ 648 (704)
T TIGR01666 643 TLEHIE 648 (704)
T ss_pred Hhhccc
Confidence 877754
No 5
>PF04632 FUSC: Fusaric acid resistance protein family; InterPro: IPR006726 This entry represents the p-hydroxybenzoic acid efflux pump subunit AaeB (pHBA efflux pump protein B) whose substrates are p-hydroxybenzoic acid (pHBA), 6-hydroxy-2-naphthoic and 2-hydroxycinnamate. It could function as a metabolic relief valve, allowing to eliminate certain compounds when they accumulate to high levels in the cell []. This family also includes fusaric acid resistance proteins [], which are likely to be membrane transporter proteins, and uncharacterised transporter YdhK.; GO: 0006810 transport, 0005886 plasma membrane
Probab=99.94 E-value=1.3e-24 Score=245.96 Aligned_cols=239 Identities=21% Similarity=0.320 Sum_probs=179.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhccccccCCCchHHhHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 008877 56 RVKFSFKVGLAVLLVSLLILFRAPYEIFGTNIIWSILTVAVMFEYTVGATFNRGFNRALGSLLAGILAIAVAQFALSTGR 135 (550)
Q Consensus 56 ~~~~alK~glA~~La~ll~~l~~l~~~~g~~~~WaviTvvvV~~ptvG~tl~kg~~R~lGTllG~~la~~~~~l~~~~g~ 135 (550)
+++|++|+++|.+++.++++..++ ++++|+++||++|+||+.|+++.||++|++||++|+++|+++..++.+..
T Consensus 1 ~~~~alr~~lA~~lAl~ia~~l~l-----~~p~WA~~tv~iV~qp~~G~~~~k~~~R~~GT~iGa~~~~~lv~~~~~~p- 74 (650)
T PF04632_consen 1 RLRFALRTALAAMLALYIAFWLQL-----PHPYWAAMTVFIVSQPSSGASLSKGLYRLIGTLIGAAAGLLLVALFPQSP- 74 (650)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhCC-----CCcHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCH-
Confidence 478999999999999999999998 99999999999999999999999999999999999999997754444322
Q ss_pred hhhHHHHHHHHHHHHHHHhhhhhhcccccchhHHHHHHHHHHHHHHcc-cCCCchhHHHHHHHHHHHHHHHHHHHHHhhc
Q 008877 136 VAEPIIIGISIFLIGAVTSFMKLWPSLVPYEYGFRVILFTYCLIIVSG-YRMGNPIRTSMDRLYSIAIGGFVAVLVNVLV 214 (550)
Q Consensus 136 ~~~~i~igl~vfl~~~~~t~~r~~p~lk~~~yg~~ia~lT~~lV~vs~-~~~~~~~~~A~~R~~~I~iGi~iallV~~li 214 (550)
+ .+.+++++|+.. |.|.-.+ .-+.+.|++.++++|.+||.+.+ .++++.|+++++|+.+|++|++|+.+|+.++
T Consensus 75 ~--l~~~~lal~i~~--c~~~~~~-~~~~~~y~~~lag~T~~iv~~~~~~~p~~~f~~a~~R~~ei~iGi~~a~~v~~l~ 149 (650)
T PF04632_consen 75 L--LFLLALALWIGL--CLYLSLL-DRNFRSYAFMLAGYTAAIVALPAVGNPEQVFDLALWRVLEILIGILCATLVSMLF 149 (650)
T ss_pred H--HHHHHHHHHHHH--HHHHHHh-cCCcchHHHHHHHHHHHHHHhhcccCccHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 2 122223333211 1222111 11237899999999999998854 4566789999999999999999999999999
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCcccccccCCCCChhHHHHHHHHHHhHHHHHHHHhhhhhCC
Q 008877 215 FPIWAGEQLHKELVNSFNSLADSLEECVKKYLEDDGLDHPDFTKTLMDEFPDEPAYKKCKNTLNSSAKLESLSISAKWEP 294 (550)
Q Consensus 215 ~P~~a~~~L~~~la~~l~~la~~l~~~v~~yl~~~~~e~~~~~~k~l~~~~~~~l~~~~r~~l~s~~~lesL~~~a~~Ep 294 (550)
||.++++.|++.+.+.+.++.+++... +.++. ..+. ..+++..+..++++++.++.+|.
T Consensus 150 ~P~~~~~~l~~~l~~~l~~~~~~~~~~----l~~~~--------------~~~~---~~~~l~~~~~~l~~~~~~~~~e~ 208 (650)
T PF04632_consen 150 FPQRARRQLRRRLAQRLADLARWLAAL----LDGDP--------------DPAA---ERRRLARDIAALESLLSHARYES 208 (650)
T ss_pred CCccHHHHHHHHHHHHHHHHHHHHHHH----hCCCc--------------ccch---HHHHHHHHHHHHHHHHhhccccC
Confidence 999999999999999999999999877 33320 0111 45566777788999999999997
Q ss_pred CCCCCcccCCChhHHHHHHHHHHHHHHHHHHHHHhhh
Q 008877 295 PHGRFRHFFYPWSKYVKVGAVLRYCAYEVMALHGVLH 331 (550)
Q Consensus 295 ~~gr~~~~~~P~~~Y~~l~~~lr~~a~~l~aL~~~l~ 331 (550)
+..+. -...+..+...+..+...+..++..+.
T Consensus 209 ~~~~~-----~~~~~~~l~~~~~~l~~~~~~l~~~~~ 240 (650)
T PF04632_consen 209 PRLRR-----RRRRLRALQARLLRLLALLRSLARRLA 240 (650)
T ss_pred chhHH-----HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 65432 123344454444445455555554443
No 6
>PRK10631 p-hydroxybenzoic acid efflux subunit AaeB; Provisional
Probab=99.92 E-value=2.5e-22 Score=223.90 Aligned_cols=216 Identities=18% Similarity=0.267 Sum_probs=173.1
Q ss_pred hcCchhHHHHHHHHHHHHHHHHHHHhhccccccCCCchHHhHHHHHhh---------ccChHHHHHHHHHHHHHHHHHHH
Q 008877 51 REDSNRVKFSFKVGLAVLLVSLLILFRAPYEIFGTNIIWSILTVAVMF---------EYTVGATFNRGFNRALGSLLAGI 121 (550)
Q Consensus 51 ~~d~~~~~~alK~glA~~La~ll~~l~~l~~~~g~~~~WaviTvvvV~---------~ptvG~tl~kg~~R~lGTllG~~ 121 (550)
..+..+++|++|+++|++++..+++..++ ++++|+++||+||+ ||..|.++.||++|++||++|++
T Consensus 3 ~p~~~~~~falk~~lA~~LAL~ia~~l~L-----~~P~WA~~Tv~iv~~~~~~~~g~qp~~G~v~~K~~~Ri~GTliGa~ 77 (652)
T PRK10631 3 SIANQRLRFAVKLAFAIVLALFVGFHFQL-----ETPRWAVLTAAIVAAGPAFAAGGEPFSGAIRYRGMLRIIGTFIGCI 77 (652)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHCCC-----CCccHHHHHHHHHHcccccccccCCccchHHHHHHHHHHHHHHHHH
Confidence 45677899999999999999999999998 89999999999999 99999999999999999999999
Q ss_pred HHHHHHHHh-hcccchhhHHHHHHHHHHHHHHHhhhhhhccccc-chhHHHHHHHHHHHHHHcc-cCCCchhHHHHHHHH
Q 008877 122 LAIAVAQFA-LSTGRVAEPIIIGISIFLIGAVTSFMKLWPSLVP-YEYGFRVILFTYCLIIVSG-YRMGNPIRTSMDRLY 198 (550)
Q Consensus 122 la~~~~~l~-~~~g~~~~~i~igl~vfl~~~~~t~~r~~p~lk~-~~yg~~ia~lT~~lV~vs~-~~~~~~~~~A~~R~~ 198 (550)
.|+++..++ +.+.. +.+++++|+ |+ |+|...+ .+. +.|++.++++|.+||++.. .+++..|++++.|+.
T Consensus 78 ~~l~l~~~f~~~p~l----~~l~l~lWi-g~-c~~~s~l--~r~~~sY~~~LaGyTa~iI~~~~~~~p~~~f~~A~~R~~ 149 (652)
T PRK10631 78 AALVIIIATIRAPLL----MILLCCIWA-GF-CTWISSL--VRVENSYAWGLAGYTALIIVITIQPEPLLTPQFAVERCS 149 (652)
T ss_pred HHHHHHHHhcCChHH----HHHHHHHHH-HH-HHHHHHh--ccchhHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHH
Confidence 999765544 43322 222233332 11 1221111 222 7899999999999998853 446678999999999
Q ss_pred HHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCcccccccCCCCChhHHHHHHHHHH
Q 008877 199 SIAIGGFVAVLVNVLVFPIWAGEQLHKELVNSFNSLADSLEECVKKYLEDDGLDHPDFTKTLMDEFPDEPAYKKCKNTLN 278 (550)
Q Consensus 199 ~I~iGi~iallV~~li~P~~a~~~L~~~la~~l~~la~~l~~~v~~yl~~~~~e~~~~~~k~l~~~~~~~l~~~~r~~l~ 278 (550)
+|++|++|+.+|+.+++|.+.+..++..+.+.+.+..++++.+ +.+. .++.......++..
T Consensus 150 Ei~iGi~ca~lv~~l~~P~~~~~~l~~~l~~~~~~~~~~~~~~----l~~~---------------~~~~~~~~~~~L~~ 210 (652)
T PRK10631 150 EIVIGIVCAILADLLFSPRSIKQEVDRELDSLLVAQYQLMQLC----IKHG---------------DKEEVDKAWGDLVR 210 (652)
T ss_pred HHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHHHHHHHH----hccC---------------ccchhhHHHHHHHH
Confidence 9999999999999999999999999999999999999988877 3221 11234556777888
Q ss_pred hHHHHHHHHhhhhhCCCCCC
Q 008877 279 SSAKLESLSISAKWEPPHGR 298 (550)
Q Consensus 279 s~~~lesL~~~a~~Ep~~gr 298 (550)
+...+|.++.++.||.++.|
T Consensus 211 di~~le~lr~~~~~e~~~~r 230 (652)
T PRK10631 211 RTTALNGMRSNLMMESSRWQ 230 (652)
T ss_pred HHHHHHHHHHhhccCCcchh
Confidence 88899999999999976654
No 7
>PRK11427 multidrug efflux system protein MdtO; Provisional
Probab=99.87 E-value=8.7e-20 Score=202.64 Aligned_cols=218 Identities=18% Similarity=0.198 Sum_probs=159.4
Q ss_pred HhhcCchhHHHHHHHHHHHHHHHHHHHhhccccccCCCchHHhHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008877 49 FAREDSNRVKFSFKVGLAVLLVSLLILFRAPYEIFGTNIIWSILTVAVMFEYTVGATFNRGFNRALGSLLAGILAIAVAQ 128 (550)
Q Consensus 49 ~~~~d~~~~~~alK~glA~~La~ll~~l~~l~~~~g~~~~WaviTvvvV~~ptvG~tl~kg~~R~lGTllG~~la~~~~~ 128 (550)
....|+..++|++|+.+|++++++++...++ ++++|+++|+++|++|+.|.|.+|+++|++||++|+++|+++.+
T Consensus 343 dA~tNp~~~R~ALRt~lAa~La~~i~~~l~w-----~~pyWamLTvvIVsqP~~GaT~sRa~~RiiGTliGallA~ll~v 417 (683)
T PRK11427 343 DAFTNPDYMRYALKTLLACLICYTFYSGVDW-----EGIHTCMLTCVIVANPNVGSSYQKMVLRFGGAFCGAILALLFTL 417 (683)
T ss_pred HhccCHHHHHHHHHHHHHHHHHHHHHHHcCC-----CccHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4467888899999999999999999988776 78999999999999999999999999999999999999998765
Q ss_pred Hhhc-ccchhhHHHHH-HHHHHHHHHHhhhhhhcccccchhHHHHHHHHHHHHHH-cccCCCchhHHHHHHHHHHHHHHH
Q 008877 129 FALS-TGRVAEPIIIG-ISIFLIGAVTSFMKLWPSLVPYEYGFRVILFTYCLIIV-SGYRMGNPIRTSMDRLYSIAIGGF 205 (550)
Q Consensus 129 l~~~-~g~~~~~i~ig-l~vfl~~~~~t~~r~~p~lk~~~yg~~ia~lT~~lV~v-s~~~~~~~~~~A~~R~~~I~iGi~ 205 (550)
+... ..... .+++. +.+++++.+.++ ....++|++..+++|+.++.+ ....+......+.+|++++++|++
T Consensus 418 ~l~P~l~~~~-~Llllllp~~llg~wv~~-----~~~R~sYa~~~ag~T~~li~L~~l~~p~~d~~~i~dRvl~tLLGi~ 491 (683)
T PRK11427 418 LVMPWLDNIV-ELLFVLAPIFLLGAWIAT-----SSERSSYIGTQMVVTFALATLENVFGPVYDLVEIRDRALGILIGTV 491 (683)
T ss_pred HhccccccHH-HHHHHHHHHHHHHHHHHH-----hcccHHHHHHHHHHHHHHHHhhcccCcccchHHHHHHHHHHHHHHH
Confidence 4432 11110 11111 111222222110 112257888889999877765 223333345677889999999999
Q ss_pred HHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCcccccccCCCCChhHHHHHHHHHHhHHHHHH
Q 008877 206 VAVLVNVLVFPIWAGEQLHKELVNSFNSLADSLEECVKKYLEDDGLDHPDFTKTLMDEFPDEPAYKKCKNTLNSSAKLES 285 (550)
Q Consensus 206 iallV~~li~P~~a~~~L~~~la~~l~~la~~l~~~v~~yl~~~~~e~~~~~~k~l~~~~~~~l~~~~r~~l~s~~~les 285 (550)
++.++..++||.|.++.+++.+.+.++..+++++...+ . +. . .+....+..+.+..+.+++|.
T Consensus 492 iA~la~~lVwP~~~~~~L~~~l~~aLr~la~~l~~~~~-----~--~~---~-------~~~~~~~~R~~l~~a~~~le~ 554 (683)
T PRK11427 492 VSAVIYTFVWPESEARTLPQKLAGALGMLSKVLRIPRQ-----Q--EV---T-------ALRTYLQIRIGLHAAFNACEE 554 (683)
T ss_pred HHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHhcccc-----c--ch---h-------hhhhHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999887765310 0 00 0 011111233455666778999
Q ss_pred HHhhhhhCC
Q 008877 286 LSISAKWEP 294 (550)
Q Consensus 286 L~~~a~~Ep 294 (550)
+.....+||
T Consensus 555 ~~~rl~~Ep 563 (683)
T PRK11427 555 MCQRVALER 563 (683)
T ss_pred HHHHhhcCc
Confidence 999999999
No 8
>COG1289 Predicted membrane protein [Function unknown]
Probab=99.74 E-value=5.1e-16 Score=176.87 Aligned_cols=185 Identities=22% Similarity=0.341 Sum_probs=145.4
Q ss_pred HHHHhhcCchhHHHHHHHHHHHHHHHHHHHhhccccccCCCchHHhHHHHHhhccC-hHHHHHHHHHHHHHHHHHHHHHH
Q 008877 46 VWEFAREDSNRVKFSFKVGLAVLLVSLLILFRAPYEIFGTNIIWSILTVAVMFEYT-VGATFNRGFNRALGSLLAGILAI 124 (550)
Q Consensus 46 ~~~~~~~d~~~~~~alK~glA~~La~ll~~l~~l~~~~g~~~~WaviTvvvV~~pt-vG~tl~kg~~R~lGTllG~~la~ 124 (550)
+....+.++..++|++|+++++++++.+....+. ++++|+++|+++|++|+ +|++..++.+|+.||++|+++|+
T Consensus 344 ~~~~~~~~~~alr~a~R~ala~~~~~~~~~~~~w-----~~g~w~llt~~vV~~~~~~~~t~~r~~~ri~GTllg~~~g~ 418 (674)
T COG1289 344 ALAHHRLNSPALRHALRTALALLLGYAFWLALGW-----PHGYWILLTAAVVCQPNAYGATRQRARQRILGTLLGLLLGL 418 (674)
T ss_pred HHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHhcC-----CccHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHHH
Confidence 5566788999999999999999999999988877 78999999999999999 99999999999999999999999
Q ss_pred HHHHHhhcccchhhHHHHHHHHHHHHHHHhhhhhhcccccchhHHHHHHHHHHHHHHcccCCCchhHHHHHHHHHHHHHH
Q 008877 125 AVAQFALSTGRVAEPIIIGISIFLIGAVTSFMKLWPSLVPYEYGFRVILFTYCLIIVSGYRMGNPIRTSMDRLYSIAIGG 204 (550)
Q Consensus 125 ~~~~l~~~~g~~~~~i~igl~vfl~~~~~t~~r~~p~lk~~~yg~~ia~lT~~lV~vs~~~~~~~~~~A~~R~~~I~iGi 204 (550)
++.++.....+. ...++.+..++.++ ++...+|++...++|+.+.++.+..+.+.......|++++++|+
T Consensus 419 ~~l~~~~p~~~~-~l~~l~~~~~l~~~---------~~~~~~~~~a~~~i~l~v~~~~~l~~~~~~~~~~~r~~d~~iG~ 488 (674)
T COG1289 419 LVLLLLLPLIPG-LLLLLLLAALLFAA---------GIRLAKYRLATLGITLLVLFLVGLLGSNGPDYDLPRFLDTLLGS 488 (674)
T ss_pred HHHHHhcccchh-HHHHHHHHHHHHHH---------HHHhcchhHHHHHHHHHHHHHHHHcccchhhhhHHHHHHHHHHH
Confidence 887765543321 11222122222111 11113455555666665555555444467788899999999999
Q ss_pred HHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008877 205 FVAVLVNVLVFPIWAGEQLHKELVNSFNSLADSLEECVKKY 245 (550)
Q Consensus 205 ~iallV~~li~P~~a~~~L~~~la~~l~~la~~l~~~v~~y 245 (550)
++++++.+++||.|....+++...+.++...+++....+.+
T Consensus 489 lIa~~~a~~v~~~~~~~~l~~~~~~~l~~~~~~l~~~~~~~ 529 (674)
T COG1289 489 LIALALAFLVWPLWRPRRLRRALRRALRALRRDLASALSRE 529 (674)
T ss_pred HHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999885544
No 9
>COG4129 Predicted membrane protein [Function unknown]
Probab=99.65 E-value=2.5e-13 Score=141.00 Aligned_cols=164 Identities=22% Similarity=0.207 Sum_probs=115.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccccccCCCchHHhHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccch
Q 008877 57 VKFSFKVGLAVLLVSLLILFRAPYEIFGTNIIWSILTVAVMFEYTVGATFNRGFNRALGSLLAGILAIAVAQFALSTGRV 136 (550)
Q Consensus 57 ~~~alK~glA~~La~ll~~l~~l~~~~g~~~~WaviTvvvV~~ptvG~tl~kg~~R~lGTllG~~la~~~~~l~~~~g~~ 136 (550)
....+|+|+|++++.+++.+.++ +++..|++++++.++||...++.++++|++|+++|+++|.++..+++. ++
T Consensus 10 g~RtlKt~ia~~La~~ia~~l~~-----~~~~~A~i~AV~~l~~t~~~s~~~~~~r~~g~~iG~~~a~l~~~l~g~-~~- 82 (332)
T COG4129 10 GARTLKTGLAAGLALLIAHLLGL-----PQPAFAGISAVLCLSPTIKRSLKRALQRLLGNALGAILAVLFFLLFGQ-NP- 82 (332)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCC-----CchHHHHHHHhhcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHcCc-cH-
Confidence 34679999999999999998887 788999999999999999999999999999999999999998777663 32
Q ss_pred hhHHHHHHHHHHHHHHHhhhhhhcccccchhHHHHHHHHHHHHHHcccCCCchhHHHHHHHHHHHHHHHHHHHHHhhccc
Q 008877 137 AEPIIIGISIFLIGAVTSFMKLWPSLVPYEYGFRVILFTYCLIIVSGYRMGNPIRTSMDRLYSIAIGGFVAVLVNVLVFP 216 (550)
Q Consensus 137 ~~~i~igl~vfl~~~~~t~~r~~p~lk~~~yg~~ia~lT~~lV~vs~~~~~~~~~~A~~R~~~I~iGi~iallV~~li~P 216 (550)
+.+|+.+.++..++..+ . ...|.....+....+++. ...+.++... |++++++|++++++||.+++|
T Consensus 83 ---~~~~v~~~i~i~~~~~~--~-----~~~g~~~~~~~~~~ii~~-~~~~~~~~~~--r~l~~~vG~~~a~lvn~~~~~ 149 (332)
T COG4129 83 ---IAFGVVLLIIIPLLVLL--K-----LENGVVPITVGVLHILVA-AMIPLFLIFN--RFLLVFVGVGVAFLVNLVMPP 149 (332)
T ss_pred ---HHHHHHHHHHHHHHHHH--h-----cccchhHHHHHHHHHHHH-cccchhHHHH--HHHHHHHHHHHHHHHhhhcCC
Confidence 33333222222222211 1 223333333333333332 2223333333 999999999999999999998
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHH
Q 008877 217 IWAGEQLHKELVNSFNSLADSLEECV 242 (550)
Q Consensus 217 ~~a~~~L~~~la~~l~~la~~l~~~v 242 (550)
+. .+++....+....+...+....
T Consensus 150 ~~--~~~~~~~~kv~~~~~~il~~~~ 173 (332)
T COG4129 150 PD--YELKLYRAKVEAILASILWEVA 173 (332)
T ss_pred ch--HHHHHHHHHHHHHHHHHHHHHH
Confidence 88 6666666666666666665543
No 10
>COG1289 Predicted membrane protein [Function unknown]
Probab=99.55 E-value=2.7e-12 Score=146.56 Aligned_cols=215 Identities=19% Similarity=0.217 Sum_probs=152.0
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHhhccccccCCCchHHhHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHH-HHhh
Q 008877 53 DSNRVKFSFKVGLAVLLVSLLILFRAPYEIFGTNIIWSILTVAVMFEYTVGATFNRGFNRALGSLLAGILAIAVA-QFAL 131 (550)
Q Consensus 53 d~~~~~~alK~glA~~La~ll~~l~~l~~~~g~~~~WaviTvvvV~~ptvG~tl~kg~~R~lGTllG~~la~~~~-~l~~ 131 (550)
....++|++|+.+|+.++..+++..++ +++.|+++|+.++++|..|+.+.|++.|++||++|..+++++. .+..
T Consensus 7 ~~~~~~~~lr~~~a~~la~~~~~~~~l-----~~~~~~~~~~~i~~~~~~~~~~~~~~~rli~tlig~~~~~~~~~~~~~ 81 (674)
T COG1289 7 TNADWRYALRTFLAACLALALAFLLGL-----PQPSWAVSTVAIVSAPDSGAVLSKGLKRLIGTLIGFAVALLLVALLAQ 81 (674)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHcCC-----CCccHHHHHHHHHhCcCCCCHHHhhHHHHHHHHHHHHHHHHHHHHHcc
Confidence 445699999999999999999999988 8899999999999999999999999999999999999999765 4444
Q ss_pred cccchhhHHHHHHHHHHHHHHHhhhhhhcccccchhHHHHHHHHHHHHHHcc-cC--CCchhHHHHHHHHHHHHHHHHHH
Q 008877 132 STGRVAEPIIIGISIFLIGAVTSFMKLWPSLVPYEYGFRVILFTYCLIIVSG-YR--MGNPIRTSMDRLYSIAIGGFVAV 208 (550)
Q Consensus 132 ~~g~~~~~i~igl~vfl~~~~~t~~r~~p~lk~~~yg~~ia~lT~~lV~vs~-~~--~~~~~~~A~~R~~~I~iGi~ial 208 (550)
.+..+. ..+++.+.+++++.+.++.. ..|++.++++|+.++. .. .- +...+..+.+|+..+++|+++.-
T Consensus 82 ~p~~f~--~~~~~~~~l~~~~~~~~~~~-----~~~a~~la~yT~~~~~-~~~~~~~~~~~~~~a~~~~~~~~l~~~~~~ 153 (674)
T COG1289 82 EPWLFL--LLLTLWLGLCTAIGSLYRTI-----ASYAFVLAGYTALIIG-PAPAIPEPELLFDGAVWRVVEILLGILCAP 153 (674)
T ss_pred CcHHHH--HHHHHHHHHHHHHHHhhccH-----HHHHHHHHHHHHHHhc-cccccccHHHHHHHHHHHHHHHHHHHHHhc
Confidence 443221 11211111222222222222 7789999999998776 21 11 23478899999999999999999
Q ss_pred HHHhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCcccccccCCCCChhHHHHHHHHHHhHHHHHHHHh
Q 008877 209 LVNVLVFPIWAGEQLHKELVNSFNSLADSLEECVKKYLEDDGLDHPDFTKTLMDEFPDEPAYKKCKNTLNSSAKLESLSI 288 (550)
Q Consensus 209 lV~~li~P~~a~~~L~~~la~~l~~la~~l~~~v~~yl~~~~~e~~~~~~k~l~~~~~~~l~~~~r~~l~s~~~lesL~~ 288 (550)
.+....+|......|...+.........+...- ..++ . . ..+....+..+.+++....+.++.
T Consensus 154 ~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~~----~~~~---~-------~---~~~~~~~~~~~~l~~~~~~~~~r~ 216 (674)
T COG1289 154 VVPLLESPSRLYQALANYLEAKSRLFAQLLLAA----AAGE---L-------L---DTARQNAALVDALAQTLTLRLLRS 216 (674)
T ss_pred cchHhhhHHHHHHHHHHHHHHHHhccchhhhhh----hcCC---c-------c---cHHHHhHHHHHHHHHHHHHHHHHH
Confidence 999988888887777666655544444443332 1111 0 0 123344567777888777888877
Q ss_pred hhhhCCCCCC
Q 008877 289 SAKWEPPHGR 298 (550)
Q Consensus 289 ~a~~Ep~~gr 298 (550)
. .+|...++
T Consensus 217 ~-~~~~~~~~ 225 (674)
T COG1289 217 A-GFEGSRGR 225 (674)
T ss_pred h-cccCCchh
Confidence 7 77765443
No 11
>PRK11427 multidrug efflux system protein MdtO; Provisional
Probab=99.55 E-value=2.9e-12 Score=143.11 Aligned_cols=169 Identities=15% Similarity=0.085 Sum_probs=126.1
Q ss_pred cCchhHHHHHHHHHHHHHHHHHHHhhccccccCCCchHHhHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHH-h
Q 008877 52 EDSNRVKFSFKVGLAVLLVSLLILFRAPYEIFGTNIIWSILTVAVMFEYTVGATFNRGFNRALGSLLAGILAIAVAQF-A 130 (550)
Q Consensus 52 ~d~~~~~~alK~glA~~La~ll~~l~~l~~~~g~~~~WaviTvvvV~~ptvG~tl~kg~~R~lGTllG~~la~~~~~l-~ 130 (550)
..|.+.-..+|+.++.+++.++....++ ++++|+..++.++.||..|.+..|++.|++||++|+++++++.-+ .
T Consensus 25 ~~P~r~~~~~r~~~a~~L~l~i~~~l~~-----P~~a~a~~~vfivsqp~~g~t~~kai~r~vgt~lg~~~~vll~~~~v 99 (683)
T PRK11427 25 RRPGRVPQTLQLWVGCLLVILISMTFEI-----PFLALSLAVLFYGIQSNAFYTKFVAILFVVATVLEIGSLFLIYKWSY 99 (683)
T ss_pred CCCChHHHHHHHHHHHHHHHHHHHHcCC-----CHHHHHHHHHHheeccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3455666779999999999999998888 888999999999999999999999999999999999999976543 3
Q ss_pred hcccchhhHHHHHHHHHHHHHHHhhhhhhcccccchhHHHHHHHHHHHH--HHcccCCCchhHHHHHHHHH-----HHHH
Q 008877 131 LSTGRVAEPIIIGISIFLIGAVTSFMKLWPSLVPYEYGFRVILFTYCLI--IVSGYRMGNPIRTSMDRLYS-----IAIG 203 (550)
Q Consensus 131 ~~~g~~~~~i~igl~vfl~~~~~t~~r~~p~lk~~~yg~~ia~lT~~lV--~vs~~~~~~~~~~A~~R~~~-----I~iG 203 (550)
..|- . ..+.+++++.+ +.|.- ...+..|.+.++++|. ++ .+.+..+ ..-+..|... |.+|
T Consensus 100 ~~P~--l--~~l~ialw~~~--~lyl~---r~~rl~yvf~lag~ta-ii~~~f~~v~~---~~E~~~R~~e~~w~~i~~g 166 (683)
T PRK11427 100 GYPL--I--RLIIAGPILMG--CMFLM---RTHRLGLVFFAVAIVA-IYGQTFPAMLD---YPEVVVRLTLWCIVVGLYP 166 (683)
T ss_pred cchH--H--HHHHHHHHHHH--HHHHh---hccchhHHHHHHHHHH-HHHhhcccccc---hHHHHHHHHHHHHHHHHHH
Confidence 3322 1 22222222211 12221 1222589999999994 44 2222221 2233778777 9999
Q ss_pred HHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHH
Q 008877 204 GFVAVLVNVLVFPIWAGEQLHKELVNSFNSLADSL 238 (550)
Q Consensus 204 i~iallV~~li~P~~a~~~L~~~la~~l~~la~~l 238 (550)
++|+.+||.++||...+..++..+...+++...++
T Consensus 167 i~ca~lV~~l~~P~~~~~~l~~~l~~~l~~a~~~l 201 (683)
T PRK11427 167 TLLMTLIGVLWFPSRAINQMHQALNDRLDDAISHL 201 (683)
T ss_pred HHHHHHHHhHhCcCChHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999988776654
No 12
>PF10337 DUF2422: Protein of unknown function (DUF2422); InterPro: IPR018823 This domain is found in proteins conserved in fungi. Their function is not known. This entry represents the N-terminal half of some member proteins which contain IPR018820 from INTERPRO at their C terminus.
Probab=99.55 E-value=1.8e-11 Score=133.83 Aligned_cols=260 Identities=14% Similarity=0.114 Sum_probs=171.0
Q ss_pred hcCchhHHHHHHHHHHHHHHHHHHHhhccccccCCCchHHhHHHHHhhc-cChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008877 51 REDSNRVKFSFKVGLAVLLVSLLILFRAPYEIFGTNIIWSILTVAVMFE-YTVGATFNRGFNRALGSLLAGILAIAVAQF 129 (550)
Q Consensus 51 ~~d~~~~~~alK~glA~~La~ll~~l~~l~~~~g~~~~WaviTvvvV~~-ptvG~tl~kg~~R~lGTllG~~la~~~~~l 129 (550)
..|.+.++..+|++++.+++.+++..++..+++|..+|.++|..+++.- -.+|..+...+.-++|+++|.++|++..++
T Consensus 10 ~ld~~~~k~~~k~~i~~~i~~~l~~i~~~~~~~g~~~yl~~i~~~~~~p~~~~~~~~~~~~~~~~g~~~g~~~~~l~~~~ 89 (459)
T PF10337_consen 10 HLDRRSLKIMFKCWIAPWIALILCQIPPVARWLGTAGYLAPIISVIVPPGRPRGKFLEAMILLLLGVCLGWAWGLLAMYI 89 (459)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHhchHHHHHhcchhHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4588889999999999999999999999999999888988887765542 347777777788888888888888766665
Q ss_pred hhc-ccc----------------------------------hhh---HHHHHHHHHHHHHHHhhhhhhcccccchhHHHH
Q 008877 130 ALS-TGR----------------------------------VAE---PIIIGISIFLIGAVTSFMKLWPSLVPYEYGFRV 171 (550)
Q Consensus 130 ~~~-~g~----------------------------------~~~---~i~igl~vfl~~~~~t~~r~~p~lk~~~yg~~i 171 (550)
+.. .++ +++ .++.++.+|+..++..+.| ...+.+.+
T Consensus 90 a~~aR~~~t~a~l~~~~~~~~~~~s~~~~~~~~~~~i~~G~~~~a~~saV~av~l~~~i~~~~~lR------a~~p~~~~ 163 (459)
T PF10337_consen 90 AVAARPHDTQARLQQLQQSAGACTSGPNPAACAQQLIFDGFFYDARASAVFAVFLFVFIYFHGWLR------AKNPKLNF 163 (459)
T ss_pred HHHHccCccHHHHHHHHHHhccccCCCChhHHHHHhhcccceecchHHHHHHHHHHHHHHHHHHHH------HhCcchHH
Confidence 432 111 011 1333333333333334333 22222222
Q ss_pred HHHHHHHHH----Hccc-CCC-chhHHHHHHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008877 172 ILFTYCLII----VSGY-RMG-NPIRTSMDRLYSIAIGGFVAVLVNVLVFPIWAGEQLHKELVNSFNSLADSLEECVKKY 245 (550)
Q Consensus 172 a~lT~~lV~----vs~~-~~~-~~~~~A~~R~~~I~iGi~iallV~~li~P~~a~~~L~~~la~~l~~la~~l~~~v~~y 245 (550)
..+.++|++ ..+. -+. ....++..-+...++|++++++||++|||.+.+..+.+.+.+.+..+...+....+ |
T Consensus 164 ~~I~~~I~~~i~~t~g~~~p~~~~~~l~~~ll~P~~ig~ai~~~vslliFP~sss~~~~~~~~~~l~~l~~~l~~~~~-~ 242 (459)
T PF10337_consen 164 PVIFGSIFVDIFLTYGPLFPTFFAYTLGKTLLKPFLIGIAIALVVSLLIFPESSSHVVLKSMEDYLRLLKKALDAQRN-F 242 (459)
T ss_pred HHHHHHHHHHHHHHhCcCcCcchHHHHHHHHHHHHHHHHHHHHHHheeecCCCchHHHHHHHHHHHHHHHHHHHHHHH-H
Confidence 222222222 2221 122 34556667778899999999999999999999999999999999999998887544 5
Q ss_pred hccCCCCCCcccccccCCCCChhHHHHHHHHHHhHHHHHHHHhhhhhCCCCCCCcccCCChhHHHHHHHHHHHHHHHHHH
Q 008877 246 LEDDGLDHPDFTKTLMDEFPDEPAYKKCKNTLNSSAKLESLSISAKWEPPHGRFRHFFYPWSKYVKVGAVLRYCAYEVMA 325 (550)
Q Consensus 246 l~~~~~e~~~~~~k~l~~~~~~~l~~~~r~~l~s~~~lesL~~~a~~Ep~~gr~~~~~~P~~~Y~~l~~~lr~~a~~l~a 325 (550)
+.....+. +.. ...-..+.+...++.....+++.-+.+++.|-..|+ ++-+.|+.+...+|++...+..
T Consensus 243 l~~~~~~~---~~~---~~~~~~L~~~~~~l~~~~~~l~~~l~~~~~Eis~gr-----l~~~Dl~~i~~~lr~l~~~~~g 311 (459)
T PF10337_consen 243 LQSSEPSD---EFD---AKSLKKLKATKAKLRALYAKLQAALRFLKLEISYGR-----LSPDDLKPIFSLLRSLMIPLSG 311 (459)
T ss_pred HhCCCCCC---ccc---hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHeeec-----CCHHHHHHHHHHHHHHHHHHHH
Confidence 64321111 000 000022333333333444578888999999988887 6677899898888887776666
Q ss_pred HHH
Q 008877 326 LHG 328 (550)
Q Consensus 326 L~~ 328 (550)
|..
T Consensus 312 L~~ 314 (459)
T PF10337_consen 312 LSS 314 (459)
T ss_pred HHH
Confidence 665
No 13
>PF13515 FUSC_2: Fusaric acid resistance protein-like
Probab=99.52 E-value=2.2e-13 Score=122.32 Aligned_cols=124 Identities=22% Similarity=0.439 Sum_probs=91.1
Q ss_pred HHHHHHhhccccccCCCchHHhHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHH
Q 008877 70 VSLLILFRAPYEIFGTNIIWSILTVAVMFEYTVGATFNRGFNRALGSLLAGILAIAVAQFALSTGRVAEPIIIGISIFLI 149 (550)
Q Consensus 70 a~ll~~l~~l~~~~g~~~~WaviTvvvV~~ptvG~tl~kg~~R~lGTllG~~la~~~~~l~~~~g~~~~~i~igl~vfl~ 149 (550)
+.++..+.+. +|++|+++|++++++|+.|++.+++.+|++||++|+++|+++..+...+ +. .+ +.+++.
T Consensus 2 a~~i~~~~~~-----~~~~W~~it~~~v~~~~~~~~~~~~~~Ri~Gt~iG~~~~~~~~~~~~~~--~~--~~--~~~~~~ 70 (128)
T PF13515_consen 2 AFFIAQWLGL-----PHGYWAPITVVSVLSPSYGATVNRAIQRILGTLIGVVLGLLLLYLFPGN--YV--LI--LIVFLL 70 (128)
T ss_pred hhhHHHHHcC-----CchHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCH--HH--HH--HHHHHH
Confidence 3455555555 7899999999999999999999999999999999999999887666543 21 11 122222
Q ss_pred HHHHhhhhhhcccccchhHHHHHHHHHHHHHHccc---CCCchhHHHHHHHHHHHHHHHHHHHH
Q 008877 150 GAVTSFMKLWPSLVPYEYGFRVILFTYCLIIVSGY---RMGNPIRTSMDRLYSIAIGGFVAVLV 210 (550)
Q Consensus 150 ~~~~t~~r~~p~lk~~~yg~~ia~lT~~lV~vs~~---~~~~~~~~A~~R~~~I~iGi~iallV 210 (550)
.++..+ .+.+.|....+++|+.++.+... ..++.++.+..|+.++++|+++++++
T Consensus 71 ~~~~~~------~~~~~y~~~~~~~t~~~v~~~~~~~~~~~~~~~~~~~R~~~v~iG~~i~~~v 128 (128)
T PF13515_consen 71 MFLIFY------FLSKNYAIAQIFITVMVVLLFSLIHPGNGDPWQLALERILDVLIGILIALLV 128 (128)
T ss_pred HHHHHH------HHhccHHHHHHHHHHHHHHHHHHHccCCCChHHHHHHHHHHHHHHHHHHHhC
Confidence 222221 22356777778888877766443 24567889999999999999999875
No 14
>PF06081 DUF939: Bacterial protein of unknown function (DUF939); InterPro: IPR010343 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=99.52 E-value=4.9e-13 Score=123.30 Aligned_cols=136 Identities=24% Similarity=0.349 Sum_probs=100.8
Q ss_pred HHHHHHHHHHHHHHHHHhhccccccCCCchHHhHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhh
Q 008877 59 FSFKVGLAVLLVSLLILFRAPYEIFGTNIIWSILTVAVMFEYTVGATFNRGFNRALGSLLAGILAIAVAQFALSTGRVAE 138 (550)
Q Consensus 59 ~alK~glA~~La~ll~~l~~l~~~~g~~~~WaviTvvvV~~ptvG~tl~kg~~R~lGTllG~~la~~~~~l~~~~g~~~~ 138 (550)
..+|+++|.+++.+++.+.++ ++++++.+++++.+|||+.+|++.+++|+.|+++|+++|+++..+....
T Consensus 6 r~iKtaiA~~la~~ia~~l~~-----~~~~~A~i~Ail~~q~T~~~S~~~~~~Ri~~~~iG~~~a~~~~~~~g~~----- 75 (141)
T PF06081_consen 6 RTIKTAIAAFLAILIAQLLGL-----QYPFFAPIAAILSMQPTVYRSLKQGLNRILGTLIGALLALLFFLILGYN----- 75 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHCC-----CchHHHHHHHhheeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcc-----
Confidence 579999999999999988876 7899999999999999999999999999999999999999887665532
Q ss_pred HHHHHHHHHHHHHHHhhhhhhcccccchhHHHHHHHHHHHHHHcccCCCchhHHHHHHHHHHHHHHHHHHHHHhhc
Q 008877 139 PIIIGISIFLIGAVTSFMKLWPSLVPYEYGFRVILFTYCLIIVSGYRMGNPIRTSMDRLYSIAIGGFVAVLVNVLV 214 (550)
Q Consensus 139 ~i~igl~vfl~~~~~t~~r~~p~lk~~~yg~~ia~lT~~lV~vs~~~~~~~~~~A~~R~~~I~iGi~iallV~~li 214 (550)
++.+++.+++....+. ++| ...+..++++++..++.+ ..+ .+..+.+|+.++++|++++++||.++
T Consensus 76 ~~~~~l~v~i~i~~~~------~l~-~~~~~~~a~v~~~~i~~~--~~~-~~~~~~~r~l~t~iG~~va~lVN~~~ 141 (141)
T PF06081_consen 76 PLSIGLAVIITIPICN------WLK-LGEGIIVAAVTFVHILLS--GSD-SFSYALNRVLLTLIGIGVALLVNLLM 141 (141)
T ss_pred HHHHHHHHHHHHHHHH------HhC-CCCeehHHHHHHHHHHHc--CCc-cHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3444444333222222 122 223444555554333322 222 34559999999999999999999864
No 15
>PF10334 DUF2421: Protein of unknown function (DUF2421); InterPro: IPR018820 This domain is found in several uncharacterised proteins and in Brefeldin A-sensitivity protein 4, which is a zinc finger protein containing five transmembrane domains. Brefeldin A-sensitivity protein 4 null mutant exhibits strongly fragmented vacuoles and sensitivity to brefeldin A, a drug which is known to affect intracellular transport [, , ].
Probab=99.16 E-value=9e-09 Score=102.54 Aligned_cols=148 Identities=17% Similarity=0.163 Sum_probs=111.1
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCcccccccCCCCChhHHHHHHHHHHhHHHHHHHHhhhhhC
Q 008877 214 VFPIWAGEQLHKELVNSFNSLADSLEECVKKYLEDDGLDHPDFTKTLMDEFPDEPAYKKCKNTLNSSAKLESLSISAKWE 293 (550)
Q Consensus 214 i~P~~a~~~L~~~la~~l~~la~~l~~~v~~yl~~~~~e~~~~~~k~l~~~~~~~l~~~~r~~l~s~~~lesL~~~a~~E 293 (550)
.+|.+++..+|+.+++++..++++|+.++..+......++.+. ....+.+.+...++......++.++.+++||
T Consensus 1 P~P~Sar~~vRk~La~~l~~l~~~Y~~v~s~~~~~~~~~~~~~------~~~~~~~~~~~~~l~~~L~~l~~~l~~~k~E 74 (229)
T PF10334_consen 1 PRPPSARRHVRKTLASTLSELGDLYSLVVSFWSRRLDNPDGHI------DAEEDAIRKRFLKLQQSLNSLRTLLAFAKFE 74 (229)
T ss_pred CCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCcccc------hhhHHHHHHHHHHHHHHHHHHHHHHHHhCcC
Confidence 4799999999999999999999999999887765321111101 1123346667777777778999999999999
Q ss_pred CC-CCCCcccCCChhHHHHHHHHHHHHHHHHHHHHHhhhcccCCChhHHHHH----HHHHHHHHHHHHHHHHHHHHHhhc
Q 008877 294 PP-HGRFRHFFYPWSKYVKVGAVLRYCAYEVMALHGVLHSEIQAPYNLRVTF----QSEIQEVTSQAAELVRNLGKDIGN 368 (550)
Q Consensus 294 p~-~gr~~~~~~P~~~Y~~l~~~lr~~a~~l~aL~~~l~s~~qap~~lr~~f----~~~l~~l~~e~~~vL~~La~~l~~ 368 (550)
|+ .|+ ||.+.|+++...++++.+.+..|..... ... |.+.+..+ ...-.++..++..+|..+++++++
T Consensus 75 p~l~G~-----FP~~~Y~~l~~~~~~il~~l~~l~~~~~-~l~-~~~~~~~l~~~~~~~~~~~~~~i~~vl~~ls~al~~ 147 (229)
T PF10334_consen 75 PSLKGR-----FPKETYQRLLELCQNILDLLSLLSYVST-RLE-PSEWRERLLRRTGWLRPELIGDIFSVLYMLSSALRT 147 (229)
T ss_pred CCCCCC-----CCHHHHHHHHHHHHHHHHHHHHHHHHHH-Hcc-hhhHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhc
Confidence 98 444 9999999999998888887777765433 333 55544444 334456778899999999999999
Q ss_pred ccCCch
Q 008877 369 MKRSVK 374 (550)
Q Consensus 369 ~~~~~~ 374 (550)
+.+.|+
T Consensus 148 g~pLP~ 153 (229)
T PF10334_consen 148 GQPLPP 153 (229)
T ss_pred CCCCCc
Confidence 999874
No 16
>PF04632 FUSC: Fusaric acid resistance protein family; InterPro: IPR006726 This entry represents the p-hydroxybenzoic acid efflux pump subunit AaeB (pHBA efflux pump protein B) whose substrates are p-hydroxybenzoic acid (pHBA), 6-hydroxy-2-naphthoic and 2-hydroxycinnamate. It could function as a metabolic relief valve, allowing to eliminate certain compounds when they accumulate to high levels in the cell []. This family also includes fusaric acid resistance proteins [], which are likely to be membrane transporter proteins, and uncharacterised transporter YdhK.; GO: 0006810 transport, 0005886 plasma membrane
Probab=99.13 E-value=6.3e-08 Score=110.10 Aligned_cols=174 Identities=20% Similarity=0.152 Sum_probs=124.2
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHhhccccccCCCchHHhHHHHHhh--ccChHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008877 53 DSNRVKFSFKVGLAVLLVSLLILFRAPYEIFGTNIIWSILTVAVMF--EYTVGATFNRGFNRALGSLLAGILAIAVAQFA 130 (550)
Q Consensus 53 d~~~~~~alK~glA~~La~ll~~l~~l~~~~g~~~~WaviTvvvV~--~ptvG~tl~kg~~R~lGTllG~~la~~~~~l~ 130 (550)
....+++++|+++++.+++++...... +.+.-+++++.|+. -.+.++...+...++.|+++|+++|+++.++.
T Consensus 336 ~~~A~~~alra~la~~~~~l~Wi~t~W-----~~G~~~~~~~~v~~~lfa~~~~P~~~~~~~~~G~l~~~~~a~~~~~~v 410 (650)
T PF04632_consen 336 WPLALRNALRAFLAILIAGLFWIATGW-----PSGATAVMMAAVVSSLFATLDNPAPALRLFLIGALLGAVLAFLYLFFV 410 (650)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHcCC-----ChhHHHHHHHHHHHHHHcCCcChHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345677888888888888888776655 66777777776766 67778889999999999999999999776542
Q ss_pred h--cccchhhHHHHHHHHHHHHHHHhhhhhhccccc-chhHHHHHHHHHHHHHHcccCCCchhHHHHHHHHHHHHHHHHH
Q 008877 131 L--STGRVAEPIIIGISIFLIGAVTSFMKLWPSLVP-YEYGFRVILFTYCLIIVSGYRMGNPIRTSMDRLYSIAIGGFVA 207 (550)
Q Consensus 131 ~--~~g~~~~~i~igl~vfl~~~~~t~~r~~p~lk~-~~yg~~ia~lT~~lV~vs~~~~~~~~~~A~~R~~~I~iGi~ia 207 (550)
. ..+.....++++.++|+.+.+ ..++ +.+...-+++.|.+.+..++.....+....++.+.+++|++++
T Consensus 411 lP~~~~f~~L~l~l~~~l~~~~~~--------~~~p~~~~~g~~~~v~f~~~~~~~n~~~~d~~~f~n~~la~l~G~~~a 482 (650)
T PF04632_consen 411 LPHLDGFPLLALVLAPFLFLGGLL--------MARPRTAYIGLGFAVFFLLLLGPGNPYSYDFATFLNRALAILLGIVIA 482 (650)
T ss_pred hhccCcHHHHHHHHHHHHHHHHHH--------HcCchHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 2 233111123333333332221 1222 4444444555554444445556667889999999999999999
Q ss_pred HHHHhhcccchhhHHHHHHHHHHHHHHHHHHH
Q 008877 208 VLVNVLVFPIWAGEQLHKELVNSFNSLADSLE 239 (550)
Q Consensus 208 llV~~li~P~~a~~~L~~~la~~l~~la~~l~ 239 (550)
.++..++||.......++.+....+++++...
T Consensus 483 ~l~~~li~p~~~~~~~rrl~~~~~~~l~~~~~ 514 (650)
T PF04632_consen 483 ALVFRLIRPFSPEWRRRRLLRALRRDLARLAR 514 (650)
T ss_pred HHHHHHHCCCChhHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999998888876553
No 17
>PF12805 FUSC-like: FUSC-like inner membrane protein yccS
Probab=98.96 E-value=6.4e-07 Score=92.04 Aligned_cols=178 Identities=17% Similarity=0.232 Sum_probs=99.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCcccccccCCCCChhHHH
Q 008877 192 TSMDRLYSIAIGGFVAVLVNVLVFPIWAGEQLHKELVNSFNSLADSLEECVKKYLEDDGLDHPDFTKTLMDEFPDEPAYK 271 (550)
Q Consensus 192 ~A~~R~~~I~iGi~iallV~~li~P~~a~~~L~~~la~~l~~la~~l~~~v~~yl~~~~~e~~~~~~k~l~~~~~~~l~~ 271 (550)
.++.+...+++|.++.++++++.||.+..+-.++.+++++..+++|+..-.+-| ..+ +.++... ...++.+
T Consensus 70 ~~~~~~~l~~~Gglwy~~lsl~~~~l~p~r~~rqaLa~~y~~lA~yl~~ka~~~-~p~--~~~~~~~------~~~~l~~ 140 (284)
T PF12805_consen 70 EALEHALLFLAGGLWYLLLSLLWWPLRPYRPVRQALAECYRALADYLRAKARFF-DPD--QHDDDEQ------LRIELAQ 140 (284)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhcC-CCC--CccchhH------HHHHHHH
Confidence 788999999999999999999999999999999999999999999999854433 111 1100000 0111222
Q ss_pred HHHHHHHhHHHHHHHHhhhhhCCCCCCCcccCCChhHHHHHHHHHHHHHHHHHHHHHhhhcccCCChhHHHHH-----HH
Q 008877 272 KCKNTLNSSAKLESLSISAKWEPPHGRFRHFFYPWSKYVKVGAVLRYCAYEVMALHGVLHSEIQAPYNLRVTF-----QS 346 (550)
Q Consensus 272 ~~r~~l~s~~~lesL~~~a~~Ep~~gr~~~~~~P~~~Y~~l~~~lr~~a~~l~aL~~~l~s~~qap~~lr~~f-----~~ 346 (550)
...++.+...+.++.+-..+. ..++ +|.....++.... .....++..+.+.....+.+++.| -.
T Consensus 141 ~q~~v~~~~~~~R~~l~~~r~-~~~~------~~~~~~~~ll~~~----~~a~Dl~E~~~as~~~y~~l~~~f~~~~~l~ 209 (284)
T PF12805_consen 141 QQIKVNEALEQARELLLRRRR-SGRG------KPSTYGRRLLLLF----FEAVDLFERALASHYDYEELREQFKHSDVLF 209 (284)
T ss_pred HHHHHHHHHHHHHHHHHHhhc-ccCC------CCCcHHHHHHHHH----HHHHHHHHHHHhccccHHHHHHHhcCChHHH
Confidence 222333333344444332211 2221 1222222222111 111122221112222233344333 35
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccCCchHHHHHHHHHHHHHHHhhh
Q 008877 347 EIQEVTSQAAELVRNLGKDIGNMKRSVKTCLLKRLHSSTERLQGSI 392 (550)
Q Consensus 347 ~l~~l~~e~~~vL~~La~~l~~~~~~~~~~~~~~l~~a~e~Lq~~l 392 (550)
.++++..+++..++.++.++...++... .++++.++++++..+
T Consensus 210 ~~~~~l~~~a~~l~~ia~ai~~~~~~~~---~~~l~~~l~~l~~~l 252 (284)
T PF12805_consen 210 RFQRLLEQLAQALRQIAQAILRGRPYHH---RNRLKRALEALEESL 252 (284)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCC---chHHHHHHHHHHHHH
Confidence 6788888899999999999998777753 223344444444443
No 18
>TIGR01667 YCCS_YHJK integral membrane protein, YccS/YhfK family. TMHMM on members of this model shows a consensus of 11 transmembrane helices separated into two clusters, an N-terminal cluster of 6 and a central cluster of 5. This would indicate two non-membrane domains one on each side of the membrane
Probab=98.71 E-value=6.3e-06 Score=94.47 Aligned_cols=280 Identities=15% Similarity=0.128 Sum_probs=141.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhccccccCCCchHHhHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 008877 55 NRVKFSFKVGLAVLLVSLLILFRAPYEIFGTNIIWSILTVAVMFEYTVGATFNRGFNRALGSLLAGILAIAVAQFALSTG 134 (550)
Q Consensus 55 ~~~~~alK~glA~~La~ll~~l~~l~~~~g~~~~WaviTvvvV~~ptvG~tl~kg~~R~lGTllG~~la~~~~~l~~~~g 134 (550)
..+.+++|+.+|+..+.+++++.... ..++=+.+.++...-.+..+.+..=+.+++.|++...++.+...+....+
T Consensus 6 ~~~~~~l~v~ia~~~~~~~~~~~g~~----~~~i~l~lG~ia~~l~D~~~~~~~R~~~l~it~~~f~i~sl~v~ll~~~p 81 (701)
T TIGR01667 6 QKLVYCLPVFIALMGAELRIWWFGLL----FLLIPLCLGIIAAGLDDLDDRLTGRLKNLIITLSCFSIASFLVQLLFPKP 81 (701)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhCCc----cHHHHHHHhhHhhccCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHhcch
Confidence 35889999999999988877765420 11233333333333334445555446666666555555554433333222
Q ss_pred chhhHHHHHHHHHHHHHHHhhhhhhcccccchhHHHHHHHHH--HHHHHcccCCCchhHHHHHHHHHHHHHHHHHHHHHh
Q 008877 135 RVAEPIIIGISIFLIGAVTSFMKLWPSLVPYEYGFRVILFTY--CLIIVSGYRMGNPIRTSMDRLYSIAIGGFVAVLVNV 212 (550)
Q Consensus 135 ~~~~~i~igl~vfl~~~~~t~~r~~p~lk~~~yg~~ia~lT~--~lV~vs~~~~~~~~~~A~~R~~~I~iGi~iallV~~ 212 (550)
+..+..+.++.|+.+.+.. +.+ .|+ .++.-|. .+..+.+.... ...+..-..+++|.++-.++++
T Consensus 82 -~~~~~~l~~~tf~~~mlga-------~G~-r~~-~I~f~~L~~aiytml~~~~~---~~w~~~pllll~GalwY~l~sl 148 (701)
T TIGR01667 82 -WLFPFLLTLLTFGFILLGA-------LGQ-RYA-TIAFASLLAAIYTMLGAGEV---PVWFIEPLLILAGTLWYGLLTL 148 (701)
T ss_pred -HHHHHHHHHHHHHHHHHHH-------hhh-hHH-hHHHHHHHHHHHHHcCcccc---cHHHHHHHHHHHHHHHHHHHHH
Confidence 2112222222233222111 111 122 1111111 11222232221 1223366678899999999999
Q ss_pred hcccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCcccccccCCCCChhHHHHHHHHHHhHHHHHHHHhhhhh
Q 008877 213 LVFPIWAGEQLHKELVNSFNSLADSLEECVKKYLEDDGLDHPDFTKTLMDEFPDEPAYKKCKNTLNSSAKLESLSISAKW 292 (550)
Q Consensus 213 li~P~~a~~~L~~~la~~l~~la~~l~~~v~~yl~~~~~e~~~~~~k~l~~~~~~~l~~~~r~~l~s~~~lesL~~~a~~ 292 (550)
+.+..+..+-+++.+++.+..+++|++.--+ ++..+ +.++..+ ...++...-.++.+...+....+-.
T Consensus 149 l~~~l~p~rp~q~~La~~y~~La~yL~aKa~-lf~p~--~~~~~~~------~~~~l~~~n~~lv~~ln~~~~~ll~--- 216 (701)
T TIGR01667 149 IWFLLFPNQPLQESLSRLYRELAEYLEAKSS-LFDPD--QHTDPEK------ALLPLAVRNGKVVDALNQCKQQLLM--- 216 (701)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHh-CCCCC--CCCChhH------hHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 9999999999999999999999999986533 23211 1110000 0001111112222222221111111
Q ss_pred CCCCCCCcccCCChhHHHHHHHHHHHHHHHHHHHHHhhhcccCCChhHHHHHHHH-----HHHHHHHHHHHHHHHHHHhh
Q 008877 293 EPPHGRFRHFFYPWSKYVKVGAVLRYCAYEVMALHGVLHSEIQAPYNLRVTFQSE-----IQEVTSQAAELVRNLGKDIG 367 (550)
Q Consensus 293 Ep~~gr~~~~~~P~~~Y~~l~~~lr~~a~~l~aL~~~l~s~~qap~~lr~~f~~~-----l~~l~~e~~~vL~~La~~l~ 367 (550)
..++. .+.....++. +..+....+|..+.+.....+.+++.|..+ ++++....++.++.++.++.
T Consensus 217 -r~~~~-----~~~~~~~rll----~~y~~A~di~E~a~ss~~~Y~~L~~~f~~sd~l~~~~~ll~~~a~a~~~la~ai~ 286 (701)
T TIGR01667 217 -RLRGN-----RTDPLTKRML----RYYFEAQDIHERASSSHHQYQELQELFEHSDVLFRIQRLLQTQAQACQVLARDIL 286 (701)
T ss_pred -HhcCC-----CCCchHHHHH----HHHHHHHHHHHHHHhccCCHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111 1111111111 222233444444334444456677777665 88888999999999999998
Q ss_pred cccCCc
Q 008877 368 NMKRSV 373 (550)
Q Consensus 368 ~~~~~~ 373 (550)
..++..
T Consensus 287 ~~~~~~ 292 (701)
T TIGR01667 287 LRQPYY 292 (701)
T ss_pred cCCCCC
Confidence 766664
No 19
>TIGR01666 YCCS hypothetical membrane protein, TIGR01666. This model represents a clade of sequences from gamma and beta proteobacteria. These proteins are 700 amino acids long and many have been annotated as putative membrane proteins. The gene from Salmonella has been annotated as a putative efflux transporter. The gene from E. coli has the name yccS.
Probab=98.58 E-value=5.9e-05 Score=86.43 Aligned_cols=174 Identities=11% Similarity=0.101 Sum_probs=102.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhccccccCCCchHHhHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 008877 55 NRVKFSFKVGLAVLLVSLLILFRAPYEIFGTNIIWSILTVAVMFEYTVGATFNRGFNRALGSLLAGILAIAVAQFALSTG 134 (550)
Q Consensus 55 ~~~~~alK~glA~~La~ll~~l~~l~~~~g~~~~WaviTvvvV~~ptvG~tl~kg~~R~lGTllG~~la~~~~~l~~~~g 134 (550)
.++.+++|+.+|+..+.+++++.+.. +.++=+.+.++...-.+..+.+..=+.+++.|+++..++.+...+....+
T Consensus 6 ~~~~~~lri~ia~~~~~~~~~~~~~~----~~~~~l~LG~ia~al~D~d~~~~~R~~~l~~t~~~f~i~sl~v~ll~~~p 81 (704)
T TIGR01666 6 AKVIYTIPIFIALNGAAVGIWFFDIS----SQSMPLILGIIAAALVDLDDRLTGRLKNVIFTLICFSIASFSVELLFGKP 81 (704)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhCch----hHHHHHHHHHHhhccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 35889999999999888877765420 11233334443333344555555557778888777776665544433222
Q ss_pred chhhHHHHHHHHHHHHHHHhhhhhhcccccchhHHHHHHHHHHHHHHcccCCCchhHHHHHHHHHHHHHHHHHHHHHhhc
Q 008877 135 RVAEPIIIGISIFLIGAVTSFMKLWPSLVPYEYGFRVILFTYCLIIVSGYRMGNPIRTSMDRLYSIAIGGFVAVLVNVLV 214 (550)
Q Consensus 135 ~~~~~i~igl~vfl~~~~~t~~r~~p~lk~~~yg~~ia~lT~~lV~vs~~~~~~~~~~A~~R~~~I~iGi~iallV~~li 214 (550)
+..+..+.++.|..+.+. .+.+ .|+ .+++.|..+.+.+....+ .....+...+.+++|.++..+++++.
T Consensus 82 -~lf~~~l~~~tf~~~mlg-------a~G~-Rya-~Iaf~tLliaiytmlg~~-~~~~w~~~pllll~GalwY~llsl~~ 150 (704)
T TIGR01666 82 -WLFAVGLTVSTFGFIMLG-------AVGQ-RYA-TIAFGSLLVALYTMLGYI-EVNVWFIQPVMLLCGTLWYSVVTLIV 150 (704)
T ss_pred -HHHHHHHHHHHHHHHHHH-------Hhhh-hHH-HHHHHHHHHHHHHHhccc-ccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 211222222222222111 1111 122 233333321111111111 11234557888999999999999999
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 008877 215 FPIWAGEQLHKELVNSFNSLADSLEECVK 243 (550)
Q Consensus 215 ~P~~a~~~L~~~la~~l~~la~~l~~~v~ 243 (550)
|+.+..+-+++.+++.+..+++|++.-.+
T Consensus 151 ~~l~p~rp~q~~LA~~y~~La~yL~aka~ 179 (704)
T TIGR01666 151 HLFFPNRPVQENLAKAFCQLAEYLETKSC 179 (704)
T ss_pred HHHcCCChHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999987544
No 20
>PRK10631 p-hydroxybenzoic acid efflux subunit AaeB; Provisional
Probab=98.06 E-value=0.0074 Score=68.77 Aligned_cols=161 Identities=16% Similarity=0.089 Sum_probs=89.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccccccCCCchHHhHHHHHhhc--cChHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-c-
Q 008877 57 VKFSFKVGLAVLLVSLLILFRAPYEIFGTNIIWSILTVAVMFE--YTVGATFNRGFNRALGSLLAGILAIAVAQFAL-S- 132 (550)
Q Consensus 57 ~~~alK~glA~~La~ll~~l~~l~~~~g~~~~WaviTvvvV~~--ptvG~tl~kg~~R~lGTllG~~la~~~~~l~~-~- 132 (550)
...++|+++++.+++++-..-.. +.|.-+++.+.|++- -+..+-.....+=+.||++|..+|+++.++.- .
T Consensus 353 ~~~glRa~~ai~~~~~fWI~TgW-----~~Ga~a~~~aAV~~~LfA~~~nP~~~~~~fl~Gtl~a~~~a~l~~f~vLP~i 427 (652)
T PRK10631 353 MINGWRTTLATALGTLFWLWTGW-----TSGSGAMVMIAVVTSLAMRLPNPRMVAIDFLYGTLAALPLGALYFMVIIPNT 427 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHccC-----chHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 44567777777777776655443 555555544444431 11122233445566888888888887654322 2
Q ss_pred ccchhhHHHHHHHHHHHHHHHhhhhhhcccccchhHHHHHHHHHHHHHHcccCCCchhHHHHHHHHHHHHHHHHHHHHHh
Q 008877 133 TGRVAEPIIIGISIFLIGAVTSFMKLWPSLVPYEYGFRVILFTYCLIIVSGYRMGNPIRTSMDRLYSIAIGGFVAVLVNV 212 (550)
Q Consensus 133 ~g~~~~~i~igl~vfl~~~~~t~~r~~p~lk~~~yg~~ia~lT~~lV~vs~~~~~~~~~~A~~R~~~I~iGi~iallV~~ 212 (550)
.+.+ ....+.+..++ ++.+ . .+....++..-+++.++..+...+.....+...++-.+..++|++++.++..
T Consensus 428 ~~~f-~lL~laLap~~--~~~g---~--~~~~~~~~~lg~~i~f~~~l~l~n~~~~d~~~FlN~alA~v~Gi~~A~l~f~ 499 (652)
T PRK10631 428 QQSM-LLLCISLGVLG--FFIG---I--EVQKRRLGSLGALASTINILVLDNPMTFHFSQFLDSALGQIVGCFLALIVIL 499 (652)
T ss_pred cccH-HHHHHHHHHHH--HHHH---H--HhcccHHHHHHHHHHHHHHhccCCCCCcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1112 11222222211 1111 1 1222334433334444433333444455677889999999999999999999
Q ss_pred hcccchhhHHHHHHHHHH
Q 008877 213 LVFPIWAGEQLHKELVNS 230 (550)
Q Consensus 213 li~P~~a~~~L~~~la~~ 230 (550)
++.|.......|+.+...
T Consensus 500 lirp~~~~r~~rrL~~~~ 517 (652)
T PRK10631 500 LVRDNSRDRTGRVLLNQF 517 (652)
T ss_pred HhCCCCHHHHHHHHHHHH
Confidence 888887666666555443
No 21
>PF11168 DUF2955: Protein of unknown function (DUF2955); InterPro: IPR022604 Some members in this group of proteins with unknown function are annotated as membrane proteins. However, this cannot be confirmed.
Probab=96.15 E-value=0.2 Score=46.15 Aligned_cols=136 Identities=15% Similarity=0.247 Sum_probs=76.5
Q ss_pred HHHHHHHHHHHHHHHHhhccccccCCCchHHhHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhH
Q 008877 60 SFKVGLAVLLVSLLILFRAPYEIFGTNIIWSILTVAVMFEYTVGATFNRGFNRALGSLLAGILAIAVAQFALSTGRVAEP 139 (550)
Q Consensus 60 alK~glA~~La~ll~~l~~l~~~~g~~~~WaviTvvvV~~ptvG~tl~kg~~R~lGTllG~~la~~~~~l~~~~g~~~~~ 139 (550)
++|.+++.+++..+++..+. +.++.+.+-.+++..+.---+.+.+.+=++.+++-+..+.++.-+.++..
T Consensus 2 ~LRia~g~~l~l~~~~~~~~-----~~p~~~pvf~~~lL~~~~~~~~~~~~~l~~~~~~~~~~~~ll~~ll~~~P----- 71 (140)
T PF11168_consen 2 ALRIAFGVTLGLFLSKLFGW-----PLPFFAPVFPAILLGMVPPPPLKMLLQLLLVALLTALEGLLLSGLLQDYP----- 71 (140)
T ss_pred eeehhHHHHHHHHHHHHHCC-----CchHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-----
Confidence 58999999999999998877 78888888887776533333455555555666665666665544444321
Q ss_pred HHHHHHHHHHHHHHhhhhhhcccccchhHHH-HHHHHHHHHHH-cccCCCchhHHHHHHHHHHHHHHHHHHHHHhh
Q 008877 140 IIIGISIFLIGAVTSFMKLWPSLVPYEYGFR-VILFTYCLIIV-SGYRMGNPIRTSMDRLYSIAIGGFVAVLVNVL 213 (550)
Q Consensus 140 i~igl~vfl~~~~~t~~r~~p~lk~~~yg~~-ia~lT~~lV~v-s~~~~~~~~~~A~~R~~~I~iGi~iallV~~l 213 (550)
....+.+++. + |++++-..+.-.+.+. +..+...++.. +.++. ..+.++......|++++.+++.+
T Consensus 72 ~~~~l~v~l~-~---~~~f~~~~~~~~~l~~~~~lv~~~ii~~f~~~~~----~~~~~l~~~l~~~~~iav~i~~l 139 (140)
T PF11168_consen 72 VVMLLLVFLL-F---FWSFYRMSRGPKFLFGTMLLVGLSIIPVFASYNT----ADAEDLILSLVLAILIAVLIAAL 139 (140)
T ss_pred HHHHHHHHHH-H---HHHHHHHhCCCchHHHHHHHHHHHHHHHHHhcCc----chHHHHHHHHHHHHHHHHHHHHh
Confidence 2222222221 1 2223212333222222 22222222222 23332 36777888888888888887764
No 22
>TIGR02865 spore_II_E stage II sporulation protein E. Stage II sporulation protein E (SpoIIE) is a multiple membrane spanning protein with two separable functions. It plays a role in the switch to polar cell division during sporulation. By means of it protein phosphatase activity, located in the C-terminal region, it activates sigma-F. All proteins that score above the trusted cutoff to this model are found in endospore-forming Gram-positive bacteria. Surprisingly, a sequence from the Cyanobacterium-like (and presumably non-spore-forming) photosynthesizer Heliobacillus mobilis is homologous, and scores between the trusted and noise cutoffs.
Probab=84.57 E-value=93 Score=36.78 Aligned_cols=24 Identities=4% Similarity=0.275 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 008877 222 QLHKELVNSFNSLADSLEECVKKY 245 (550)
Q Consensus 222 ~L~~~la~~l~~la~~l~~~v~~y 245 (550)
++|+.+...++.+++.++.+-+.|
T Consensus 307 ~~~~~~~~rl~~~a~~~~~Ls~tf 330 (764)
T TIGR02865 307 KVREIAAEKLEEFSEVFRELSNTF 330 (764)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478888899999999999887777
No 23
>PF12732 YtxH: YtxH-like protein; InterPro: IPR024623 This family of uncharacterised proteins is found in bacteria. Proteins in this family are typically between 100 and 143 amino acids in length. The N-terminal region is the most conserved.
Probab=83.71 E-value=4.6 Score=32.85 Aligned_cols=46 Identities=17% Similarity=0.303 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 008877 197 LYSIAIGGFVAVLVNVLVFPIWAGEQLHKELVNSFNSLADSLEECVK 243 (550)
Q Consensus 197 ~~~I~iGi~iallV~~li~P~~a~~~L~~~la~~l~~la~~l~~~v~ 243 (550)
+..+++|.+++.++.+++-| ..++++|+.+.+..+++.+.+....+
T Consensus 2 ~~g~l~Ga~~Ga~~glL~aP-~sG~e~R~~l~~~~~~~~~~~~~~~~ 47 (74)
T PF12732_consen 2 LLGFLAGAAAGAAAGLLFAP-KSGKETREKLKDKAEDLKDKAKDLYE 47 (74)
T ss_pred HHHHHHHHHHHHHHHHHhCC-CCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678999999999988877 66788999999888887777665543
No 24
>PF10225 DUF2215: Uncharacterized conserved protein (DUF2215); InterPro: IPR024233 This entry represents a domain that is found in a number of different proteins, including a family of transmembrane proteins.
Probab=80.32 E-value=33 Score=34.77 Aligned_cols=126 Identities=14% Similarity=0.062 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccchh-hHHHHHHHHHHHHHHHhhhhhhcccccchhHHHHHHHHHHHHHHccc--CCC
Q 008877 111 NRALGSLLAGILAIAVAQFALSTGRVA-EPIIIGISIFLIGAVTSFMKLWPSLVPYEYGFRVILFTYCLIIVSGY--RMG 187 (550)
Q Consensus 111 ~R~lGTllG~~la~~~~~l~~~~g~~~-~~i~igl~vfl~~~~~t~~r~~p~lk~~~yg~~ia~lT~~lV~vs~~--~~~ 187 (550)
.|++--++|.++=+....++....-++ .++.+|++..++..+.-..|++| -|...|++.+++.++....+.-. +..
T Consensus 12 ~r~~~~v~Gi~Lf~~A~~LS~s~~FyY~sg~~lGv~~s~li~~~~~~k~lP-rk~~~~~~l~gg~~~~~y~l~~~~~nl~ 90 (249)
T PF10225_consen 12 WRVAQFVLGIVLFFLAPSLSRSVLFYYSSGISLGVLASLLILLFQLSKLLP-RKSMFYAVLYGGWSFGLYFLQQLWENLQ 90 (249)
T ss_pred HHHHHHHHHHHHHHHhHHhccChhHHHhhhHHHHHHHHHHHHHHHHHHHcc-CcchhHHHHhhhhHHHHHHHHHHHHHHH
Confidence 455555555544444333333221111 24455544444444445678887 22244666666655544333111 111
Q ss_pred chh-HHHHHHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHH
Q 008877 188 NPI-RTSMDRLYSIAIGGFVAVLVNVLVFPIWAGEQLHKELVNSFNSLADSL 238 (550)
Q Consensus 188 ~~~-~~A~~R~~~I~iGi~iallV~~li~P~~a~~~L~~~la~~l~~la~~l 238 (550)
..+ +....=+..+++..+++.+||.-..|... ...++.+.-.++.++-.+
T Consensus 91 ~il~~~~~~v~~yv~~~G~vsf~vcy~~gp~~~-~rs~~~v~W~Lqligl~l 141 (249)
T PF10225_consen 91 SILEEYRIYVLGYVLVVGLVSFAVCYRYGPPVD-PRSRNFVKWALQLIGLVL 141 (249)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccCCCcc-HhHHHHHHHHHHHHHHHH
Confidence 111 12233344566666688888886666653 556666666666655544
No 25
>PF06496 DUF1097: Protein of unknown function (DUF1097); InterPro: IPR009476 This family consists of several bacterial putative membrane proteins.
Probab=76.10 E-value=65 Score=29.67 Aligned_cols=45 Identities=9% Similarity=-0.110 Sum_probs=30.3
Q ss_pred chHHhHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 008877 87 IIWSILTVAVMFEYTVGATFNRGFNRALGSLLAGILAIAVAQFALS 132 (550)
Q Consensus 87 ~~WaviTvvvV~~ptvG~tl~kg~~R~lGTllG~~la~~~~~l~~~ 132 (550)
+.|+..-....+--. |+..+...+-+...+.|.+.|.+..+....
T Consensus 21 ~~W~~Figwa~yfa~-G~~~~~~~~~~~~~~~Gi~~a~~~~~~~~~ 65 (144)
T PF06496_consen 21 PGWAGFIGWASYFAA-GGGKKGLKKSLASNLSGIVWAWLAILLSGL 65 (144)
T ss_pred hHHHHHHHHHHHHHc-CCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478875554444322 666666677777779999999977665544
No 26
>PF10011 DUF2254: Predicted membrane protein (DUF2254); InterPro: IPR018723 Members of this family of proteins comprises various hypothetical and putative membrane proteins. Their exact function, has not, as yet, been defined.
Probab=75.62 E-value=51 Score=35.33 Aligned_cols=19 Identities=11% Similarity=0.310 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 008877 108 RGFNRALGSLLAGILAIAV 126 (550)
Q Consensus 108 kg~~R~lGTllG~~la~~~ 126 (550)
.+..-+++|+.|+.+++..
T Consensus 45 ~~ar~lLstia~smitv~~ 63 (371)
T PF10011_consen 45 DGARTLLSTIAGSMITVTG 63 (371)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3455668888888877744
No 27
>PF06081 DUF939: Bacterial protein of unknown function (DUF939); InterPro: IPR010343 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=69.46 E-value=21 Score=32.81 Aligned_cols=20 Identities=30% Similarity=0.298 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 008877 109 GFNRALGSLLAGILAIAVAQ 128 (550)
Q Consensus 109 g~~R~lGTllG~~la~~~~~ 128 (550)
.++|++-|++|.++|+++-+
T Consensus 120 ~~~r~l~t~iG~~va~lVN~ 139 (141)
T PF06081_consen 120 ALNRVLLTLIGIGVALLVNL 139 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 77888888888877776643
No 28
>PRK12821 aspartyl/glutamyl-tRNA amidotransferase subunit C-like protein; Provisional
Probab=63.32 E-value=89 Score=34.35 Aligned_cols=56 Identities=13% Similarity=0.188 Sum_probs=31.5
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHH--HhhcccchhhHHHHHHHHHHHHHHHhhhhh
Q 008877 101 TVGATFNRGFNRALGSLLAGILAIAVAQ--FALSTGRVAEPIIIGISIFLIGAVTSFMKL 158 (550)
Q Consensus 101 tvG~tl~kg~~R~lGTllG~~la~~~~~--l~~~~g~~~~~i~igl~vfl~~~~~t~~r~ 158 (550)
+.|.--.+-..-+.|++.|++.|.+.-. +...+|.+..++ . ++.++.|++.++.|-
T Consensus 96 sFgfIpi~l~G~LFGP~~G~l~g~lsDlLg~if~~G~fFpGF-T-LsA~L~GlIyGl~r~ 153 (477)
T PRK12821 96 TLELILVKISGLLFGPIIGIFSAATIDFLTVIFSGGVFNYGY-V-LGAILTGMIAGILRE 153 (477)
T ss_pred ehhhHHHHHHHHHhhhHHHHHHHHHHHHHHhhcCCCCccHHH-H-HHHHHHHHHHHHHHH
Confidence 3455555556777888888888874432 222234443223 2 334556666666664
No 29
>PRK11677 hypothetical protein; Provisional
Probab=62.54 E-value=30 Score=31.81 Aligned_cols=49 Identities=14% Similarity=0.165 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHhhcccch-hhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008877 198 YSIAIGGFVAVLVNVLVFPIW-AGEQLHKELVNSFNSLADSLEECVKKYL 246 (550)
Q Consensus 198 ~~I~iGi~iallV~~li~P~~-a~~~L~~~la~~l~~la~~l~~~v~~yl 246 (550)
+..+||++|++++..+.-|.. ...+|.+.+.+.-..+.+|=+.+.+.|.
T Consensus 8 i~livG~iiG~~~~R~~~~~~~~q~~le~eLe~~k~ele~YkqeV~~HFa 57 (134)
T PRK11677 8 IGLVVGIIIGAVAMRFGNRKLRQQQALQYELEKNKAELEEYRQELVSHFA 57 (134)
T ss_pred HHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677889999999988766663 5567777777776666666655555543
No 30
>PF11992 DUF3488: Domain of unknown function (DUF3488); InterPro: IPR021878 This presumed domain is functionally uncharacterised. This domain is found in bacteria. This domain is typically between 323 to 339 amino acids in length. This domain is found associated with PF01841 from PFAM. This domain has a conserved PLW sequence motif. This domain contains 6 transmembrane helices.
Probab=60.07 E-value=2.3e+02 Score=29.75 Aligned_cols=10 Identities=30% Similarity=0.654 Sum_probs=4.5
Q ss_pred chHHhHHHHH
Q 008877 87 IIWSILTVAV 96 (550)
Q Consensus 87 ~~WaviTvvv 96 (550)
+.|....+++
T Consensus 27 p~w~~~~~~~ 36 (325)
T PF11992_consen 27 PLWVIVFFAA 36 (325)
T ss_pred hHHHHHHHHH
Confidence 3455544433
No 31
>PRK09776 putative diguanylate cyclase; Provisional
Probab=54.91 E-value=4.6e+02 Score=31.72 Aligned_cols=34 Identities=15% Similarity=0.144 Sum_probs=15.5
Q ss_pred chHHhHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHH
Q 008877 87 IIWSILTVAVMFEYTVGATFNRGFNRALGSLLAGILAIAV 126 (550)
Q Consensus 87 ~~WaviTvvvV~~ptvG~tl~kg~~R~lGTllG~~la~~~ 126 (550)
..|.+-.+.+.. .+..+..+..|-++|++++.++
T Consensus 26 ~iW~~~g~~~~~------ll~~~~~~~~~~~~~~~~~~l~ 59 (1092)
T PRK09776 26 PLWFPTAIMMVA------FYRHAGRMWPGILLSCSLGNIA 59 (1092)
T ss_pred cccccHHHHHHH------HHhcchhhhHHHHHHHHHHHHh
Confidence 466554443322 2333444445555555555433
No 32
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=53.50 E-value=50 Score=29.23 Aligned_cols=29 Identities=17% Similarity=0.197 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 008877 105 TFNRGFNRALGSLLAGILAIAVAQFALST 133 (550)
Q Consensus 105 tl~kg~~R~lGTllG~~la~~~~~l~~~~ 133 (550)
.++-...=+.|+++|+++|++.=.++...
T Consensus 45 a~klssefIsGilVGa~iG~llD~~agTs 73 (116)
T COG5336 45 AFKLSSEFISGILVGAGIGWLLDKFAGTS 73 (116)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 35555677889999999999888777643
No 33
>COG4980 GvpP Gas vesicle protein [General function prediction only]
Probab=49.60 E-value=63 Score=28.89 Aligned_cols=45 Identities=31% Similarity=0.492 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHHHH
Q 008877 196 RLYSIAIGGFVAVLVNVLVFPIWAGEQLHKELVNSFNSLADSLEEC 241 (550)
Q Consensus 196 R~~~I~iGi~iallV~~li~P~~a~~~L~~~la~~l~~la~~l~~~ 241 (550)
-++-+++|.+|+.++.+++-|. .++++|+.+.+..+.+-...+..
T Consensus 7 ~l~G~liGgiiGa~aaLL~AP~-sGkelR~~~K~~~~~~~~~ae~~ 51 (115)
T COG4980 7 FLFGILIGGIIGAAAALLFAPK-SGKELRKKLKKSGDALFELAEDK 51 (115)
T ss_pred HHHHHHHHHHHHHHHHHHhCCc-ccHHHHHHHHHHHHHhHHHHHHH
Confidence 3567899999999998776665 45778866666655555544444
No 34
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=49.36 E-value=65 Score=29.16 Aligned_cols=49 Identities=16% Similarity=0.264 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHhhcccchh-hHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008877 197 LYSIAIGGFVAVLVNVLVFPIWA-GEQLHKELVNSFNSLADSLEECVKKY 245 (550)
Q Consensus 197 ~~~I~iGi~iallV~~li~P~~a-~~~L~~~la~~l~~la~~l~~~v~~y 245 (550)
++..+||++|++++..+..+... ...|.+.|.+.=..+.++=+.+.+.|
T Consensus 3 ~i~lvvG~iiG~~~~r~~~~~~~~q~~l~~eL~~~k~el~~yk~~V~~HF 52 (128)
T PF06295_consen 3 IIGLVVGLIIGFLIGRLTSSNQQKQAKLEQELEQAKQELEQYKQEVNDHF 52 (128)
T ss_pred HHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667888888888887776643 35666666666566655544444433
No 35
>PF12841 YvrJ: YvrJ protein family; InterPro: IPR024419 This entry is represents a family of uncharacterised protein. The function of the Bacillus subtilis YvrJ protein is not known, but its expression is regulated by the cell envelope stress-inducible sigma factor YvrI [].
Probab=48.18 E-value=43 Score=23.96 Aligned_cols=32 Identities=31% Similarity=0.519 Sum_probs=28.4
Q ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 008877 505 AALSLATFTSLLIEFVARLDHLAEAVDELSKL 536 (550)
Q Consensus 505 ~~l~~~~~~sllie~v~~~~~~~~~~~el~~~ 536 (550)
-..|.|.-.-||+-+=.|+|++.+++++|++.
T Consensus 6 ~GFPi~va~yLL~R~E~kld~L~~~i~~L~~~ 37 (38)
T PF12841_consen 6 VGFPIAVAIYLLVRIEKKLDELTESINELSEA 37 (38)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 35688888899999999999999999999863
No 36
>PF03419 Peptidase_U4: Sporulation factor SpoIIGA This family belongs to family U4 of the peptidase classification.; InterPro: IPR005081 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This group of peptidases belong to the MEROPS peptidase family U4 (SpoIIGA peptidase family, clan U-). Sporulation in bacteria such as Bacillus subtilis involves the formation of a polar septum, which divides the sporangium into a mother cell and a forespore. The sigma E factor, which is encoded within the spoIIG operon, is a cell-specific regulatory protein that directs gene transcription in the mother cell. Sigma E is synthesised as an inactive proprotein pro-sigma E, which is converted to the mature factor by the putative processing enzyme SpoIIGA []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis, 0030436 asexual sporulation
Probab=42.89 E-value=81 Score=32.51 Aligned_cols=18 Identities=11% Similarity=0.091 Sum_probs=13.2
Q ss_pred HHHHhhhhhccccccccC
Q 008877 386 ERLQGSIDMHSYLLTTAS 403 (550)
Q Consensus 386 e~Lq~~l~~~~~ll~~~~ 403 (550)
+.++..++--||.=++.+
T Consensus 226 ~~~~~~~r~IPy~sVg~~ 243 (293)
T PF03419_consen 226 SPWQKRFRLIPYRSVGGE 243 (293)
T ss_pred ccccCcEEEEEEeeecCC
Confidence 356777788888777766
No 37
>PRK10263 DNA translocase FtsK; Provisional
Probab=42.87 E-value=7.3e+02 Score=31.38 Aligned_cols=14 Identities=21% Similarity=0.181 Sum_probs=7.3
Q ss_pred hHHHHHHHHHHHHH
Q 008877 102 VGATFNRGFNRALG 115 (550)
Q Consensus 102 vG~tl~kg~~R~lG 115 (550)
+|+-+...+.-++|
T Consensus 67 VGA~LAD~L~~LFG 80 (1355)
T PRK10263 67 PGAWLADTLFFIFG 80 (1355)
T ss_pred HHHHHHHHHHHHHh
Confidence 55555555554555
No 38
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=39.81 E-value=4.4e+02 Score=27.09 Aligned_cols=38 Identities=13% Similarity=0.216 Sum_probs=26.3
Q ss_pred hHHHHHHH-HHHHHHHHHHHHHHhhcccchhhHHHHHHH
Q 008877 190 IRTSMDRL-YSIAIGGFVAVLVNVLVFPIWAGEQLHKEL 227 (550)
Q Consensus 190 ~~~A~~R~-~~I~iGi~iallV~~li~P~~a~~~L~~~l 227 (550)
+-.+.-|+ +.+++|++++-.....||=..=.+++...-
T Consensus 80 ~~~~~~R~~lAvliaivIs~pl~l~iF~~eI~~~l~~~~ 118 (301)
T PF14362_consen 80 LLQALPRLLLAVLIAIVISEPLELKIFEKEIDQKLDEIR 118 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566675 888899999998888887655444444433
No 39
>KOG2322 consensus N-methyl-D-aspartate receptor glutamate-binding subunit [Signal transduction mechanisms]
Probab=37.72 E-value=2.3e+02 Score=28.49 Aligned_cols=58 Identities=17% Similarity=0.410 Sum_probs=29.5
Q ss_pred CCCCcchhhh-HHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHhhccccccCCCc--hHHhHHHHHh
Q 008877 31 SGGDGDFSIK-AWVWKVWEFAREDSNRVKFSFKVGLAVLLVSLLILFRAPYEIFGTNI--IWSILTVAVM 97 (550)
Q Consensus 31 ~~~~~~~~~~-~~~~~~~~~~~~d~~~~~~alK~glA~~La~ll~~l~~l~~~~g~~~--~WaviTvvvV 97 (550)
+++|--.++| +|.||++..+. +...+....+.++.+..+..+++-.++ +|+.+.+.++
T Consensus 35 ~~~~~~~~iR~~FiRKVYsIl~---------~QLl~T~~~~~~~~~~~~~~~~v~~~~~~~~~~~~vf~v 95 (237)
T KOG2322|consen 35 PGAFCDQSIRWGFIRKVYSILS---------IQLLITLAVVAIFTVHEPVQDFVRRNPALYWALIVVFIV 95 (237)
T ss_pred ccccchHHHHHHHHHHHHHHHH---------HHHHHHHHheeEEEEccHHHHHHHhCcHHHHHHHHHHHH
Confidence 5555445555 67777664443 333334444444445555545554343 4666555444
No 40
>PF00873 ACR_tran: AcrB/AcrD/AcrF family; InterPro: IPR001036 The Escherichia coli acrA and acrB genes encode a multi-drug efflux system that is believed to protect the bacterium against hydrophobic inhibitors []. The E. coli AcrB protein is a transporter that is energized by proton-motive force and that shows the widest substrate specificity among all known multidrug pumps, ranging from most of the currently used antibiotics, disinfectants, dyes, and detergents to simple solvents. The structure of ligand-free AcrB shows that it is a homotrimer of 110kDa per subunit. Each subunit contains 12 transmembrane helices and two large periplasmic domains (each exceeding 300 residues) between helices 1 and 2, and helices 7 and 8. X-ray analysis of the overexpressed AcrB protein demonstrated that the three periplasmic domains form, in the centre, a funnel-like structure and a connected narrow (or closed) pore. The pore is opened to the periplasm through three vestibules located at subunit interfaces. These vestibules were proposed to allow direct access of drugs from the periplasm as well as the outer leaflet of the cytoplasmic membrane. The three transmembrane domains of AcrB protomers form a large, 30A-wide central cavity that spans the cytoplasmic membrane and extends to the cytoplasm X-ray crystallographic structures of the trimeric AcrB pump from E. coli with four structurally diverse ligands demonstrated that three molecules of ligand bind simultaneously to the extremely large central cavity of 5000 cubic angstroms, primarily by hydrophobic, aromatic stacking and van der Waals interactions. Each ligand uses a slightly different subset of AcrB residues for binding. The bound ligand molecules often interact with each other, stabilising the binding. ; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2V50_B 1T9U_A 2HRT_B 3NOC_A 3NOG_A 4DX7_A 1OYD_A 3AOB_A 1T9V_A 4DX6_B ....
Probab=36.75 E-value=4.1e+02 Score=32.44 Aligned_cols=31 Identities=16% Similarity=0.135 Sum_probs=23.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhcccchh
Q 008877 189 PIRTSMDRLYSIAIGGFVAVLVNVLVFPIWA 219 (550)
Q Consensus 189 ~~~~A~~R~~~I~iGi~iallV~~li~P~~a 219 (550)
.-.+...=...+++.+++++++++++-|.-+
T Consensus 456 ~g~~~~~l~~~v~~al~~Sllval~~~P~l~ 486 (1021)
T PF00873_consen 456 AGQFFRPLALTVIIALIASLLVALTLVPALA 486 (1021)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 3345555567788999999999999999644
No 41
>PRK11412 putative uracil/xanthine transporter; Provisional
Probab=36.55 E-value=4.1e+02 Score=29.26 Aligned_cols=27 Identities=22% Similarity=0.384 Sum_probs=20.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhccc
Q 008877 190 IRTSMDRLYSIAIGGFVAVLVNVLVFP 216 (550)
Q Consensus 190 ~~~A~~R~~~I~iGi~iallV~~li~P 216 (550)
+.--+.|...+++|++++.+++.+.++
T Consensus 189 ~~~g~~~~~svLiGiv~G~v~a~~~~g 215 (433)
T PRK11412 189 FLPQRIARYSLLVGTIVGWILWAFCFP 215 (433)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHhC
Confidence 334577899999999999998764444
No 42
>PRK10503 multidrug efflux system subunit MdtB; Provisional
Probab=35.12 E-value=5.8e+02 Score=31.36 Aligned_cols=29 Identities=10% Similarity=0.249 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccchhhH
Q 008877 193 SMDRLYSIAIGGFVAVLVNVLVFPIWAGE 221 (550)
Q Consensus 193 A~~R~~~I~iGi~iallV~~li~P~~a~~ 221 (550)
...-...+++|+++++++++++.|.-...
T Consensus 469 ~~~~~~~v~~~l~~S~~~al~~~P~l~~~ 497 (1040)
T PRK10503 469 FREFAVTLAVAILISAVVSLTLTPMMCAR 497 (1040)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445788899999999999999965443
No 43
>KOG2568 consensus Predicted membrane protein [Function unknown]
Probab=34.58 E-value=7.1e+02 Score=28.09 Aligned_cols=146 Identities=14% Similarity=0.057 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccccccCCCchHHhHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccch
Q 008877 57 VKFSFKVGLAVLLVSLLILFRAPYEIFGTNIIWSILTVAVMFEYTVGATFNRGFNRALGSLLAGILAIAVAQFALSTGRV 136 (550)
Q Consensus 57 ~~~alK~glA~~La~ll~~l~~l~~~~g~~~~WaviTvvvV~~ptvG~tl~kg~~R~lGTllG~~la~~~~~l~~~~g~~ 136 (550)
...|+|..++.+|..+++. ++| +..|+.|+++.|-..-.++-++.+.+..++-.+.......
T Consensus 275 i~sa~K~Tlsr~LlLIVSl------GYG------------IVkP~Lg~~l~rv~~ig~~~~i~s~i~~l~~~~g~~se~~ 336 (518)
T KOG2568|consen 275 ILSAIKKTLSRLLLLIVSL------GYG------------IVKPTLGGTLLRVCQIGVIYFIASEILGLARVIGNISELS 336 (518)
T ss_pred HHHHHHHHHHHHHHHHHhc------Ccc------------eEecCcchHHHHHHHHhHHHHHHHHHHHHHHHhcCccccc
Q ss_pred hh-------HHHHHHHHHHHHHHHhhhhhhcccccchhHH------------------HHHHHHHHHHHHcccCCCchhH
Q 008877 137 AE-------PIIIGISIFLIGAVTSFMKLWPSLVPYEYGF------------------RVILFTYCLIIVSGYRMGNPIR 191 (550)
Q Consensus 137 ~~-------~i~igl~vfl~~~~~t~~r~~p~lk~~~yg~------------------~ia~lT~~lV~vs~~~~~~~~~ 191 (550)
.. +.++....|+...+.+..+-+-.++...+.. .++.+-+..+..++..-+..|.
T Consensus 337 ~~~~lf~~ip~ai~d~~f~~wIF~SL~~Tlk~Lr~rRn~vKl~lYr~F~n~l~~~Vvas~~~i~~~~~~~~~~~~~~~Wk 416 (518)
T KOG2568|consen 337 SLLILFAALPLAILDAAFIYWIFISLAKTLKKLRLRRNIVKLSLYRKFTNTLAFSVVASFAFILVETIFYSIMSCNKDWK 416 (518)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccchhh
Q 008877 192 TSMDRLYSIAIGGFVAVLVNVLVFPIWAG 220 (550)
Q Consensus 192 ~A~~R~~~I~iGi~iallV~~li~P~~a~ 220 (550)
..|--....-+=..+-+++..++|++++.
T Consensus 417 ~~Wv~~a~W~~l~~~iLvvI~~LWrPS~n 445 (518)
T KOG2568|consen 417 ERWVDTAFWPLLFFLILVVIMFLWRPSQN 445 (518)
T ss_pred HhhhhhccHHHHHHHHHHHHHHhcCCCCC
No 44
>KOG4267 consensus Predicted membrane protein [Function unknown]
Probab=32.82 E-value=3e+02 Score=24.48 Aligned_cols=64 Identities=14% Similarity=0.085 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHhhcccchhhHHHHH-HHHHHHHHHHhhhhhhcccccchhHHHHHHHHHHHHH
Q 008877 113 ALGSLLAGILAIAVAQFALSTGRVAEPIIIG-ISIFLIGAVTSFMKLWPSLVPYEYGFRVILFTYCLII 180 (550)
Q Consensus 113 ~lGTllG~~la~~~~~l~~~~g~~~~~i~ig-l~vfl~~~~~t~~r~~p~lk~~~yg~~ia~lT~~lV~ 180 (550)
+.|.+.|++.|++...+..++..-. -+.++ .+.++.+. +..|++++ ++..+..+++.++.++..
T Consensus 32 ~aGl~~G~l~g~~s~~l~~~~~~~~-~~~l~~~s~~L~gv--mg~R~~~s-~K~mPaglva~~s~~m~~ 96 (110)
T KOG4267|consen 32 AAGLLFGALAGYGSYLLSRDKKGGS-LVALGGTSAALLGV--MGQRFYRS-RKIMPAGLVAGISLLMTC 96 (110)
T ss_pred HHHHHHHHHHHHHHHHhhcCCCcCc-hhHHHHHHHHHHHH--Hhhhhhcc-CCccchHHHHHHHHHHHH
Confidence 4677888777777766666543111 12222 34444443 57787743 334456666666654443
No 45
>PF04286 DUF445: Protein of unknown function (DUF445); InterPro: IPR007383 This entry contains proteins of unknown function. They are predicted to be transmembrane proteins with 2 or 3 TM domains.
Probab=31.69 E-value=36 Score=35.58 Aligned_cols=21 Identities=24% Similarity=0.425 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 008877 110 FNRALGSLLAGILAIAVAQFA 130 (550)
Q Consensus 110 ~~R~lGTllG~~la~~~~~l~ 130 (550)
+-|+.|+++||++|++.+.+.
T Consensus 344 ~IrinGallG~liG~~~~~i~ 364 (367)
T PF04286_consen 344 WIRINGALLGGLIGLLQYLIL 364 (367)
T ss_pred hhhhhhHHHHHHHHHHHHHHH
Confidence 578999999999999875543
No 46
>COG3105 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=31.37 E-value=3.2e+02 Score=25.03 Aligned_cols=49 Identities=22% Similarity=0.271 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHhhcccchhhH--HHHHHHHHHHHHHHHHHHHHHHHhh
Q 008877 197 LYSIAIGGFVAVLVNVLVFPIWAGE--QLHKELVNSFNSLADSLEECVKKYL 246 (550)
Q Consensus 197 ~~~I~iGi~iallV~~li~P~~a~~--~L~~~la~~l~~la~~l~~~v~~yl 246 (550)
.+..++|++|+.++..+ -|..... .+.+.+.+.=..+-.+=+.++..|-
T Consensus 12 ~igLvvGi~IG~li~Rl-t~~~~k~q~~~q~ELe~~K~~ld~~rqel~~HFa 62 (138)
T COG3105 12 LIGLVVGIIIGALIARL-TNRKLKQQQKLQYELEKVKAQLDEYRQELVKHFA 62 (138)
T ss_pred HHHHHHHHHHHHHHHHH-cchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566778888777764 4555555 5555555555555555555555554
No 47
>PF14351 DUF4401: Domain of unknown function (DUF4401)
Probab=30.81 E-value=5.1e+02 Score=26.96 Aligned_cols=61 Identities=21% Similarity=0.324 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHhhccccccC-CCchHHhHHHHHhhccChHHHHHHHHHHHHHHHHHHHH
Q 008877 59 FSFKVGLAVLLVSLLILFRAPYEIFG-TNIIWSILTVAVMFEYTVGATFNRGFNRALGSLLAGIL 122 (550)
Q Consensus 59 ~alK~glA~~La~ll~~l~~l~~~~g-~~~~WaviTvvvV~~ptvG~tl~kg~~R~lGTllG~~l 122 (550)
+.=++++|..++...+....+++.+. ....|..++++...- -......+.|++.+..++..
T Consensus 58 f~~q~ala~~laG~~~~~~gl~~~~~~~~~~~l~~~~i~~~~---~~l~~~~l~rfLs~~~~~~~ 119 (326)
T PF14351_consen 58 FLDQLALALFLAGQILLGFGLFDLFMSSLSVWLIFALILAVL---YFLMPDRLLRFLSAFLAAIA 119 (326)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhhhHHHHHHHHHHHHHH
Confidence 55677777777766655444443331 112333333332221 11333468899966554433
No 48
>COG0670 Integral membrane protein, interacts with FtsH [General function prediction only]
Probab=30.72 E-value=5.6e+02 Score=25.67 Aligned_cols=30 Identities=23% Similarity=0.272 Sum_probs=20.7
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 008877 188 NPIRTSMDRLYSIAIGGFVAVLVNVLVFPI 217 (550)
Q Consensus 188 ~~~~~A~~R~~~I~iGi~iallV~~li~P~ 217 (550)
.++.....-+..-++|++++.+||+++.-.
T Consensus 140 ~Dls~l~~~l~~aligLiiasvvn~Fl~s~ 169 (233)
T COG0670 140 RDLSSLGSFLFMALIGLIIASLVNIFLGSS 169 (233)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHcCc
Confidence 344444555566679999999999877543
No 49
>COG3275 LytS Putative regulator of cell autolysis [Signal transduction mechanisms]
Probab=30.49 E-value=8.2e+02 Score=27.50 Aligned_cols=15 Identities=33% Similarity=0.609 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHH
Q 008877 110 FNRALGSLLAGILAI 124 (550)
Q Consensus 110 ~~R~lGTllG~~la~ 124 (550)
--|.+|.+.||++|.
T Consensus 68 NtR~igv~~gGllgG 82 (557)
T COG3275 68 NTRAIGVVMGGLLGG 82 (557)
T ss_pred hhHHHHHHhcccccC
Confidence 467777777777653
No 50
>PF11085 YqhR: Conserved membrane protein YqhR; InterPro: IPR024563 This family of proteins is conserved in the Bacillaceae family of the Firmicutes. Their function is not known.
Probab=30.03 E-value=2.5e+02 Score=26.89 Aligned_cols=23 Identities=17% Similarity=0.349 Sum_probs=13.4
Q ss_pred HhhccChHHHHHHHHHHHHHHHHHHH
Q 008877 96 VMFEYTVGATFNRGFNRALGSLLAGI 121 (550)
Q Consensus 96 vV~~ptvG~tl~kg~~R~lGTllG~~ 121 (550)
+..+|-+.....++. +|+++|.+
T Consensus 53 ~ll~Pf~~g~wk~t~---~G~~igi~ 75 (173)
T PF11085_consen 53 FLLEPFALGDWKNTW---LGNLIGIV 75 (173)
T ss_pred hhhhhhhccchhhhh---HHHHHHHH
Confidence 556776655555554 56665544
No 51
>PF08893 DUF1839: Domain of unknown function (DUF1839); InterPro: IPR014989 This group of proteins are functionally uncharacterised.
Probab=29.96 E-value=2.1e+02 Score=30.09 Aligned_cols=81 Identities=11% Similarity=0.046 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHHHHhhhcccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCchHHHHHHHHHHHHHHHhhhh
Q 008877 314 AVLRYCAYEVMALHGVLHSEIQAPYNLRVTFQSEIQEVTSQAAELVRNLGKDIGNMKRSVKTCLLKRLHSSTERLQGSID 393 (550)
Q Consensus 314 ~~lr~~a~~l~aL~~~l~s~~qap~~lr~~f~~~l~~l~~e~~~vL~~La~~l~~~~~~~~~~~~~~l~~a~e~Lq~~l~ 393 (550)
..+|+|+...+-+..++..-.......-....+.|..++++...+-=.|+.++...+....++.++.+..+-+++...|.
T Consensus 238 ntlRQlGAnfEL~a~~l~WL~~~g~~~~~~aa~a~~~ias~Ak~~QFrLARAv~r~r~~~~~~~Ld~~~~ay~~~~~~L~ 317 (319)
T PF08893_consen 238 NTLRQLGANFELLASYLRWLDAQGFSGPAEAAEACRTIASEAKVVQFRLARAVARGRFDDCEDCLDPMEAAYDRAMDGLA 317 (319)
T ss_pred hhHHhccccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCchhHHHHHHHHHHHHHHHHh
Confidence 56777777766666654432211111122356788888888866666899998776666667778888888887776665
Q ss_pred h
Q 008877 394 M 394 (550)
Q Consensus 394 ~ 394 (550)
+
T Consensus 318 ~ 318 (319)
T PF08893_consen 318 R 318 (319)
T ss_pred c
Confidence 4
No 52
>COG3949 Uncharacterized membrane protein [Function unknown]
Probab=29.04 E-value=1.5e+02 Score=31.49 Aligned_cols=21 Identities=14% Similarity=0.339 Sum_probs=13.5
Q ss_pred chhHHHHHHHHHHHHHHcccC
Q 008877 165 YEYGFRVILFTYCLIIVSGYR 185 (550)
Q Consensus 165 ~~yg~~ia~lT~~lV~vs~~~ 185 (550)
+++...++.++.++|+++|..
T Consensus 84 ~d~~iif~lf~~~vVM~AGag 104 (349)
T COG3949 84 IDIIIIFFLFSTAVVMLAGAG 104 (349)
T ss_pred HHHHHHHHHHHHHHHHhccch
Confidence 555666667777777776543
No 53
>PF12805 FUSC-like: FUSC-like inner membrane protein yccS
Probab=28.36 E-value=6.5e+02 Score=25.61 Aligned_cols=26 Identities=15% Similarity=0.170 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHhhhhhcccccc
Q 008877 375 TCLLKRLHSSTERLQGSIDMHSYLLT 400 (550)
Q Consensus 375 ~~~~~~l~~a~e~Lq~~l~~~~~ll~ 400 (550)
.+....++..++.+-..++...+-+.
T Consensus 205 ~~~l~~~~~~l~~~a~~l~~ia~ai~ 230 (284)
T PF12805_consen 205 SDVLFRFQRLLEQLAQALRQIAQAIL 230 (284)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666666666555443
No 54
>PF13515 FUSC_2: Fusaric acid resistance protein-like
Probab=28.15 E-value=1.1e+02 Score=26.68 Aligned_cols=32 Identities=22% Similarity=0.469 Sum_probs=26.3
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 008877 185 RMGNPIRTSMDRLYSIAIGGFVAVLVNVLVFPI 217 (550)
Q Consensus 185 ~~~~~~~~A~~R~~~I~iGi~iallV~~li~P~ 217 (550)
..+.....+.+|+..+++|+++++++.. +.|.
T Consensus 28 ~~~~~~~~~~~Ri~Gt~iG~~~~~~~~~-~~~~ 59 (128)
T PF13515_consen 28 SYGATVNRAIQRILGTLIGVVLGLLLLY-LFPG 59 (128)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCC
Confidence 4567888999999999999999999874 4443
No 55
>COG4956 Integral membrane protein (PIN domain superfamily) [General function prediction only]
Probab=27.97 E-value=4.7e+02 Score=27.59 Aligned_cols=20 Identities=20% Similarity=0.177 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 008877 108 RGFNRALGSLLAGILAIAVA 127 (550)
Q Consensus 108 kg~~R~lGTllG~~la~~~~ 127 (550)
+.+-|++-+++|+.+|+...
T Consensus 3 ~~ii~l~~~i~g~~lG~~~~ 22 (356)
T COG4956 3 KWIIILLFIIIGAVLGFAVI 22 (356)
T ss_pred HHHHHHHHHHHHhhhhHhhH
Confidence 45668888999999998554
No 56
>TIGR00915 2A0602 The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family. This family is one of several subfamilies within the scope of pfam model pfam00873.
Probab=27.84 E-value=1.2e+03 Score=28.63 Aligned_cols=28 Identities=18% Similarity=0.161 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccchh
Q 008877 192 TSMDRLYSIAIGGFVAVLVNVLVFPIWA 219 (550)
Q Consensus 192 ~A~~R~~~I~iGi~iallV~~li~P~~a 219 (550)
+...=...+++|+++++++++++-|.-+
T Consensus 466 ~~~~~~~~i~~~l~~S~l~al~~~P~l~ 493 (1044)
T TIGR00915 466 IYRQFSITIVSAMALSVLVALILTPALC 493 (1044)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344456788999999999999888543
No 57
>TIGR03480 HpnN hopanoid biosynthesis associated RND transporter like protein HpnN. The genomes containing members of this family share the machinery for the biosynthesis of hopanoid lipids. Furthermore, the genes of this family are usually located proximal to other components of this biological process. The proteins appear to be related to the RND family of export proteins, particularly the hydrophobe/amphiphile efflux-3 (HAE3) family represented by TIGR00921.
Probab=27.19 E-value=5.7e+02 Score=30.59 Aligned_cols=23 Identities=13% Similarity=0.255 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHhhcccc
Q 008877 195 DRLYSIAIGGFVAVLVNVLVFPI 217 (550)
Q Consensus 195 ~R~~~I~iGi~iallV~~li~P~ 217 (550)
.-...+.+|+++|+++++++.|.
T Consensus 832 ~~G~~~~~gi~~~l~~~l~~lPa 854 (862)
T TIGR03480 832 SMGILLSLGLGLTLLCTLIFLPA 854 (862)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 34456677788888887777774
No 58
>COG5438 Predicted multitransmembrane protein [Function unknown]
Probab=26.52 E-value=1.8e+02 Score=31.36 Aligned_cols=71 Identities=18% Similarity=0.348 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHH---HHHHHhhccccccCCCchHHhHHHHHhhc----cChHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008877 59 FSFKVGLAVLLV---SLLILFRAPYEIFGTNIIWSILTVAVMFE----YTVGATFNRGFNRALGSLLAGILAIAVAQFAL 131 (550)
Q Consensus 59 ~alK~glA~~La---~ll~~l~~l~~~~g~~~~WaviTvvvV~~----ptvG~tl~kg~~R~lGTllG~~la~~~~~l~~ 131 (550)
.++|.-+++++. .++.+++-.+. |.+++|..+..++++. +-+-+-..|.+.-++||++|.++..++.+++.
T Consensus 149 ~G~ksli~L~vn~~~i~~i~I~li~~--g~~~i~v~ii~~viit~~tL~~v~g~n~KTl~A~~~Ti~~~~ls~il~~~~i 226 (385)
T COG5438 149 RGLKSLIGLVVNLFAIIIILIPLIIN--GFNPILVFIILCVIITAITLFMVNGINKKTLAAFIGTILGTLLSIILAYISI 226 (385)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHHHHHhhcCccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555544 22223333322 3467787766655543 22333355667777888887777776665543
No 59
>COG4291 Predicted membrane protein [Function unknown]
Probab=25.63 E-value=2.7e+02 Score=27.42 Aligned_cols=19 Identities=26% Similarity=0.197 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 008877 113 ALGSLLAGILAIAVAQFAL 131 (550)
Q Consensus 113 ~lGTllG~~la~~~~~l~~ 131 (550)
+.+..+|+++++++.+-..
T Consensus 24 f~~a~lg~vlall~~~~~~ 42 (228)
T COG4291 24 FAIAALGGVLALLLALALS 42 (228)
T ss_pred HHHHHHHHHHHHHHHHhcc
Confidence 3566788888887765444
No 60
>KOG3817 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.73 E-value=1.5e+02 Score=31.77 Aligned_cols=110 Identities=16% Similarity=0.156 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccchh-hHHHHHHHHHHHHHHHhhhhhhcccccchhHHHHHHHHHHHHHHc--ccCC
Q 008877 110 FNRALGSLLAGILAIAVAQFALSTGRVA-EPIIIGISIFLIGAVTSFMKLWPSLVPYEYGFRVILFTYCLIIVS--GYRM 186 (550)
Q Consensus 110 ~~R~lGTllG~~la~~~~~l~~~~g~~~-~~i~igl~vfl~~~~~t~~r~~p~lk~~~yg~~ia~lT~~lV~vs--~~~~ 186 (550)
+.|++--+.|.++-+..-.++.++.-+. .++.+|++.-++..+.-..||+|.-. -.|+.++++-++++-++- ..+-
T Consensus 137 ~krflvfv~gi~Lff~ar~Lsrn~vFYYssG~v~GilaSLl~Viflv~rf~PKkt-~~~~iliGgWs~slY~i~ql~~nL 215 (452)
T KOG3817|consen 137 LKRFLVFVVGILLFFSARRLSRNSVFYYSSGIVIGILASLLVVIFLVARFFPKKT-MMYGILIGGWSISLYVIKQLADNL 215 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCceEEEecccHHHHHHHHHHHHHHHHHhccccc-ceEEEEEccchhHHHHHHHHHHHH
Confidence 4555544444444333334444332111 24455544333333334567776322 345666666555544432 1111
Q ss_pred CchhHHHHHH-HHHHHHHHHHHHHHHhhcccchhh
Q 008877 187 GNPIRTSMDR-LYSIAIGGFVAVLVNVLVFPIWAG 220 (550)
Q Consensus 187 ~~~~~~A~~R-~~~I~iGi~iallV~~li~P~~a~ 220 (550)
...|...++- +..+++=.+++++||+=.=|....
T Consensus 216 q~Iwieyr~yvLgYvlivgliSfaVCYK~GPp~d~ 250 (452)
T KOG3817|consen 216 QLIWIEYRDYVLGYVLIVGLISFAVCYKIGPPKDP 250 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCc
Confidence 2233333333 345566678899999988887653
No 61
>TIGR02849 spore_III_AD stage III sporulation protein AD. Members of this family are the uncharacterized protein SpoIIIAD, part of the spoIIIA operon that acts at sporulation stage III as part of a cascade of events leading to endospore formation. Note that the start sites of members of this family as annotated tend to be variable; quite a few members have apparent homologous protein-coding regions continuing upstream of the first available start codon. The length of the alignment has been set to try to detect all valid members of the family, even if annotation of the start site begins too far downstream.
Probab=24.07 E-value=1.3e+02 Score=26.35 Aligned_cols=35 Identities=17% Similarity=0.334 Sum_probs=29.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCC
Q 008877 507 LSLATFTSLLIEFVARLDHLAEAVDELSKLAKFKH 541 (550)
Q Consensus 507 l~~~~~~sllie~v~~~~~~~~~~~el~~~a~f~~ 541 (550)
+|+++=.-++.=++.|++.++|.+++|++.||-..
T Consensus 5 lsl~agi~If~~~i~kl~~ii~~l~~l~~~a~i~~ 39 (101)
T TIGR02849 5 LSLIAGIVIFLFVMPKINAVVEVIQSLARKAGLDS 39 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCh
Confidence 56677777788889999999999999999998653
No 62
>COG4129 Predicted membrane protein [Function unknown]
Probab=23.99 E-value=8.8e+02 Score=25.71 Aligned_cols=31 Identities=23% Similarity=0.105 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccch
Q 008877 106 FNRGFNRALGSLLAGILAIAVAQFALSTGRV 136 (550)
Q Consensus 106 l~kg~~R~lGTllG~~la~~~~~l~~~~g~~ 136 (550)
..+...|++=|.+|+.+++.++.+...+.+.
T Consensus 6 ~~~ig~RtlKt~ia~~La~~ia~~l~~~~~~ 36 (332)
T COG4129 6 MRKIGARTLKTGLAAGLALLIAHLLGLPQPA 36 (332)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCchH
Confidence 3456789999999999999887766655543
No 63
>PF07907 YibE_F: YibE/F-like protein; InterPro: IPR012507 The sequences featured in this family are similar to two proteins expressed by Lactococcus lactis, YibE (Q9CHC5 from SWISSPROT) and YibF (Q9CHC4 from SWISSPROT). Most of the members of this family are annotated as being putative membrane proteins, and in fact the sequences contain a high proportion of hydrophobic residues.
Probab=23.65 E-value=2.3e+02 Score=28.69 Aligned_cols=70 Identities=17% Similarity=0.258 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHH--HHhhccccccCCCchHHhHHHHHhhc----cChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008877 59 FSFKVGLAVLLVSLL--ILFRAPYEIFGTNIIWSILTVAVMFE----YTVGATFNRGFNRALGSLLAGILAIAVAQF 129 (550)
Q Consensus 59 ~alK~glA~~La~ll--~~l~~l~~~~g~~~~WaviTvvvV~~----ptvG~tl~kg~~R~lGTllG~~la~~~~~l 129 (550)
.++|..+++.+..++ ..+.+. ...|.++.|..+.+.+++- .-+.+-..|.+.-++||++|.+++.++.++
T Consensus 21 ~G~~sllsL~~n~~~i~~~~i~~-~~~G~~~~~v~~i~~~~~~~vtl~lv~G~n~kt~~A~~~tl~~~~~~~~l~~~ 96 (244)
T PF07907_consen 21 KGLRSLLSLIFNFLIIFFVLIPL-ILNGYNPILVTIIAAILITAVTLFLVNGFNKKTLAAFIGTLIGVLLAGILALL 96 (244)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HhCCCCHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666665554333 233332 2233466666554444332 234445677777788888877777765443
No 64
>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]
Probab=23.56 E-value=4.5e+02 Score=27.67 Aligned_cols=28 Identities=21% Similarity=0.369 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 008877 106 FNRGFNRALGSLLAGILAIAVAQFALST 133 (550)
Q Consensus 106 l~kg~~R~lGTllG~~la~~~~~l~~~~ 133 (550)
+-.=+.-+-|.++.+++|+.+.++.+.+
T Consensus 78 LAQPwsiiGGNlvaAlvgvtva~~vgd~ 105 (382)
T COG3448 78 LAQPWSIIGGNLVAALVGVTVAYFVGDP 105 (382)
T ss_pred cccchhhhcchHHHHHHhhhhhhhhCCh
Confidence 3334788899999999999988887754
No 65
>COG4980 GvpP Gas vesicle protein [General function prediction only]
Probab=22.99 E-value=82 Score=28.20 Aligned_cols=25 Identities=28% Similarity=0.461 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q 008877 222 QLHKELVNSFNSLADSLEECVKKYL 246 (550)
Q Consensus 222 ~L~~~la~~l~~la~~l~~~v~~yl 246 (550)
++-..+++++.+.+.-+...+.++-
T Consensus 61 ~~s~~~a~~~~~~~~~ik~~v~~~~ 85 (115)
T COG4980 61 KLSKESAETLKDQGGEIKESVKKWK 85 (115)
T ss_pred HHhHHHHHHHHHhhHHHHHHHHHhH
Confidence 5666677777777766666666554
No 66
>PF01988 VIT1: VIT family; InterPro: IPR008217 Proteins containing this entry have no known function and are predicted to be integral membrane proteins. They include the Ccc1 protein from Saccharomyces cerevisiae (Baker's yeast) (P47818 from SWISSPROT) that may have a role in regulating calcium levels [].
Probab=22.28 E-value=4.1e+02 Score=25.98 Aligned_cols=29 Identities=14% Similarity=0.280 Sum_probs=20.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008877 102 VGATFNRGFNRALGSLLAGILAIAVAQFA 130 (550)
Q Consensus 102 vG~tl~kg~~R~lGTllG~~la~~~~~l~ 130 (550)
...-+..++.-+++.++|+++-++-.++.
T Consensus 128 ~~~p~~~al~~~~sf~lg~liPllp~~~~ 156 (213)
T PF01988_consen 128 EESPWKAALATFLSFILGGLIPLLPYFFL 156 (213)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44557777888888888887777654444
No 67
>PRK09823 putative inner membrane protein; Provisional
Probab=22.12 E-value=6.4e+02 Score=23.39 Aligned_cols=91 Identities=16% Similarity=0.183 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhc-ccchhhHHHH-HHHHHHHHHHHhhhhhhcccccchhHHHHHHHHHHHHHHcccCC
Q 008877 109 GFNRALGSLLAGILAIAVAQFALS-TGRVAEPIII-GISIFLIGAVTSFMKLWPSLVPYEYGFRVILFTYCLIIVSGYRM 186 (550)
Q Consensus 109 g~~R~lGTllG~~la~~~~~l~~~-~g~~~~~i~i-gl~vfl~~~~~t~~r~~p~lk~~~yg~~ia~lT~~lV~vs~~~~ 186 (550)
++.-.+|..+|+.+.++.-.+... +.......++ .+-+|++ .+ +-|+..-+.+|-..+.. -+
T Consensus 12 ~wFallGPlIGv~~~i~~i~f~~~~~~~~lll~i~~i~plf~~---l~----------w~~g~~pAlLTGVa~Ac---lP 75 (160)
T PRK09823 12 LWFALLGPLIGVLFLVLYIFFLPGAKEPLLLLVIIQVLPLFLL---LS----------WTTGAIPALLTGVAVAC---LP 75 (160)
T ss_pred hHHHHhcchhhhHHHHHHHHhcCCCCCchhhhHHHHhhHHHHH---HH----------HHHhhHHHHHHHHHHHh---Cc
Confidence 466778999999888866545332 2211101111 1111111 11 34555566666533322 24
Q ss_pred CchhHHHHHHHHHHH-HHHHHHHHHHhhcc
Q 008877 187 GNPIRTSMDRLYSIA-IGGFVAVLVNVLVF 215 (550)
Q Consensus 187 ~~~~~~A~~R~~~I~-iGi~iallV~~li~ 215 (550)
.....-.++|.+.-. -|.+++.+.|..+.
T Consensus 76 ~kiyq~~~~R~lacgi~G~vIttLy~~~~~ 105 (160)
T PRK09823 76 EKIYQQKIYRCLACGIGGVVITTLYCAVIV 105 (160)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHh
Confidence 567888999986654 56677777766543
No 68
>PF06123 CreD: Inner membrane protein CreD; InterPro: IPR010364 This family consists of several bacterial CreD or Cet inner membrane proteins. Dominant mutations of the cet gene of Escherichia coli result in tolerance to colicin E2 and increased amounts of an inner membrane protein with a Mr of 42,000. The cet gene is shown to be in the same operon as the phoM gene, which is required in a phoR background for expression of the structural gene for alkaline phosphatase, phoA. Although the Cet protein is not required for phoA expression, it has been suggested that the Cet protein has an enhancing effect on the transcription of phoA [].
Probab=21.21 E-value=6.1e+02 Score=27.96 Aligned_cols=43 Identities=9% Similarity=0.225 Sum_probs=21.2
Q ss_pred hHHHHHHHHHHHHHHHHH-HHhhccccccCCCc-hHHhHHHHHhh
Q 008877 56 RVKFSFKVGLAVLLVSLL-ILFRAPYEIFGTNI-IWSILTVAVMF 98 (550)
Q Consensus 56 ~~~~alK~glA~~La~ll-~~l~~l~~~~g~~~-~WaviTvvvV~ 98 (550)
+.-.|+|.|+-+....++ .|+.++.....-|+ .++++...+++
T Consensus 293 ~~~Ra~KYgiLFI~LTF~~fflfE~~~~~~iHpiQY~LVGlAl~l 337 (430)
T PF06123_consen 293 KSERAVKYGILFIGLTFLAFFLFELLSKLRIHPIQYLLVGLALVL 337 (430)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHH
Confidence 445678887665544333 34444433322233 55555544444
No 69
>PF03176 MMPL: MMPL family; InterPro: IPR004869 Proteins of this entry are putative integral membrane proteins from bacteria. Several of the members are mycobacterial proteins. Many of the proteins contain two copies of this aligned region. The function of these proteins is not known, although it has been suggested that they may be involved in lipid transport [].; GO: 0016020 membrane
Probab=21.08 E-value=9.1e+02 Score=24.79 Aligned_cols=25 Identities=24% Similarity=0.309 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccc
Q 008877 192 TSMDRLYSIAIGGFVAVLVNVLVFP 216 (550)
Q Consensus 192 ~A~~R~~~I~iGi~iallV~~li~P 216 (550)
...+-...+.+|+++++++++.+.|
T Consensus 272 ~~~~~G~~~~~gi~~~~l~~l~llP 296 (333)
T PF03176_consen 272 PLRQFGLLAAIGILIALLLSLTLLP 296 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444456778899999988888766
No 70
>KOG2927 consensus Membrane component of ER protein translocation complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.88 E-value=1e+02 Score=32.76 Aligned_cols=8 Identities=25% Similarity=0.227 Sum_probs=3.9
Q ss_pred HHHHHHHH
Q 008877 191 RTSMDRLY 198 (550)
Q Consensus 191 ~~A~~R~~ 198 (550)
.+|+-|++
T Consensus 234 vLaIvRlI 241 (372)
T KOG2927|consen 234 VLAIVRLI 241 (372)
T ss_pred HHHHHHHH
Confidence 35555543
No 71
>TIGR00930 2a30 K-Cl cotransporter.
Probab=20.79 E-value=1.6e+03 Score=27.46 Aligned_cols=176 Identities=12% Similarity=0.062 Sum_probs=0.0
Q ss_pred cCCCCCCCCCCCcchhhhHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHhhccccccCCCchHHhHHHHHhhc-cC
Q 008877 23 QQPGSGKSSGGDGDFSIKAWVWKVWEFAREDSNRVKFSFKVGLAVLLVSLLILFRAPYEIFGTNIIWSILTVAVMFE-YT 101 (550)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~alK~glA~~La~ll~~l~~l~~~~g~~~~WaviTvvvV~~-pt 101 (550)
+.|..+++.-+||.--.-+-.-.++-.+-.=...++.+-=-.....++.+++.+..+ .=++-.+-+... .-
T Consensus 69 ~~~~~~~~~lG~~~GV~~~~~~nIiGv~iFlr~~~Vvg~aG~~~sll~~~la~~vtl--------ltaLS~seiaTng~p 140 (953)
T TIGR00930 69 EKPPAGAVKFGWVMGVLVPCLLNIWGVILFLRLSWIVGQAGIGLSLLIILLCCCVTT--------ITGLSMSAIATNGVV 140 (953)
T ss_pred CCCCCCCcccceeEeeeHhhhHhHheeeeeeeHHHHHHhhhHHHHHHHHHHHHHHHH--------HHHHHHHHHHhcCCC
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHhhhhhhccccc------chhHHHHHHHH
Q 008877 102 VGATFNRGFNRALGSLLAGILAIAVAQFALSTGRVAEPIIIGISIFLIGAVTSFMKLWPSLVP------YEYGFRVILFT 175 (550)
Q Consensus 102 vG~tl~kg~~R~lGTllG~~la~~~~~l~~~~g~~~~~i~igl~vfl~~~~~t~~r~~p~lk~------~~yg~~ia~lT 175 (550)
.++.-.--+.|.+|..+|+.+|++.++ +.+++.++.++|+.-.+..+++.... ......++.++
T Consensus 141 ~aGG~Y~yisralGp~~Gf~iG~~~~l----------a~~va~A~~~~Gf~eyl~~lf~~~~~~~~~~~~~~~~iia~i~ 210 (953)
T TIGR00930 141 KGGGAYYLISRSLGPEFGGSIGLIFAF----------ANAVAVAMYVVGFAETVLDLLRENGSKIMVDPINDIRIYGTVT 210 (953)
T ss_pred CccHHHHHHHHHhCcHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHhhhcccccccCccccchHHHHHH
Q ss_pred HHHHHHcccCCCchhHHHHHHHHHHHHHHHHHHHHHhhccc
Q 008877 176 YCLIIVSGYRMGNPIRTSMDRLYSIAIGGFVAVLVNVLVFP 216 (550)
Q Consensus 176 ~~lV~vs~~~~~~~~~~A~~R~~~I~iGi~iallV~~li~P 216 (550)
..++++-....-....-+..-+..+.+..++++++..++.|
T Consensus 211 l~ll~~In~~Gvk~~ak~q~vl~vi~ll~ll~~iig~~~~~ 251 (953)
T TIGR00930 211 VVVLLGISFAGMEWENKAQVLFLVIVLLSILNIFVGTIIPA 251 (953)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHheeeecC
No 72
>PLN03140 ABC transporter G family member; Provisional
Probab=20.54 E-value=9.4e+02 Score=30.90 Aligned_cols=42 Identities=17% Similarity=0.208 Sum_probs=22.0
Q ss_pred hHHhHHHHHh-hccChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008877 88 IWSILTVAVM-FEYTVGATFNRGFNRALGSLLAGILAIAVAQF 129 (550)
Q Consensus 88 ~WaviTvvvV-~~ptvG~tl~kg~~R~lGTllG~~la~~~~~l 129 (550)
.|.+++..++ +.|+.|.-+.-.+.=++.++.+..++..++-+
T Consensus 631 if~~I~Y~m~Gl~~~~~~Ff~f~l~~~l~~~~~~~l~~~i~a~ 673 (1470)
T PLN03140 631 VWVVITYYSIGFAPEASRFFKQLLLVFLIQQMAAGIFRLIASV 673 (1470)
T ss_pred HHHhHHhhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555444 45666664444445555555555555554433
No 73
>PRK11715 inner membrane protein; Provisional
Probab=20.46 E-value=5.8e+02 Score=28.17 Aligned_cols=43 Identities=5% Similarity=0.178 Sum_probs=21.9
Q ss_pred hHHHHHHHHHHHHHHHHH-HHhhccccccCCCc-hHHhHHHHHhh
Q 008877 56 RVKFSFKVGLAVLLVSLL-ILFRAPYEIFGTNI-IWSILTVAVMF 98 (550)
Q Consensus 56 ~~~~alK~glA~~La~ll-~~l~~l~~~~g~~~-~WaviTvvvV~ 98 (550)
+.-.|+|.|+-+....++ .|+.++.....-|+ .+.++...+++
T Consensus 299 ~~~RA~KYgiLFI~LTF~~fFlfE~~~~~~iHpiQYlLVGlAl~l 343 (436)
T PRK11715 299 KTERAVKYAILFIALTFAAFFLFELLKKLRIHPVQYLLVGLALVL 343 (436)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHhcCceecHHHHHHHHHHHHH
Confidence 455788888766544433 34444433332233 55555544443
Done!