Query 008877
Match_columns 550
No_of_seqs 321 out of 1661
Neff 6.8
Searched_HMMs 29240
Date Mon Mar 25 13:48:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008877.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008877hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dx5_A Acriflavine resistance 25.4 3.6E+02 0.012 31.2 11.8 27 191-217 465-491 (1057)
2 4h33_A LMO2059 protein; bilaye 25.2 1E+02 0.0035 26.7 5.5 11 87-97 48-58 (137)
3 4dx5_A Acriflavine resistance 18.9 1.1E+03 0.037 27.1 14.2 28 191-218 998-1025(1057)
4 3ne5_A Cation efflux system pr 15.0 5.7E+02 0.02 29.5 10.5 28 191-218 1014-1041(1054)
5 3iyz_A Aquaporin-4; water tran 13.0 1E+03 0.034 23.9 11.7 23 194-216 248-270 (340)
6 3aqp_A Probable secdf protein- 12.6 1.3E+03 0.045 25.4 12.2 25 194-218 397-421 (741)
7 3cue_B Transport protein parti 11.4 91 0.0031 30.8 1.8 29 505-533 55-83 (283)
8 3ne5_A Cation efflux system pr 11.2 3.2E+02 0.011 31.7 6.7 29 191-219 480-508 (1054)
9 2v50_A Multidrug resistance pr 11.2 4.3E+02 0.015 30.6 7.9 26 193-218 467-492 (1052)
10 2zy9_A Mg2+ transporter MGTE; 10.5 9.1E+02 0.031 25.0 9.5 12 113-124 384-395 (473)
No 1
>4dx5_A Acriflavine resistance protein B; multidrug efflux protein, membrane protein, transpor; HET: LMT OCT D10 HEX D12 MIY C14 LMU DD9 UND GOL; 1.90A {Escherichia coli} PDB: 2hrt_A* 2gif_A* 4dx7_A* 4dx6_A* 3noc_A* 1oy6_A* 1oy9_A* 1oyd_A* 1oy8_A* 1oye_A 2rdd_A* 2w1b_A* 3d9b_A 2i6w_A* 3nog_A* 1t9x_A* 1t9t_A* 1t9v_A* 1t9w_A* 1t9u_A* ...
Probab=25.44 E-value=3.6e+02 Score=31.24 Aligned_cols=27 Identities=19% Similarity=0.162 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccc
Q 008877 191 RTSMDRLYSIAIGGFVAVLVNVLVFPI 217 (550)
Q Consensus 191 ~~A~~R~~~I~iGi~iallV~~li~P~ 217 (550)
.+...-.+.+++|+++++++++++.|.
T Consensus 465 ~~~~~~a~~~~~gl~~s~~~~l~~~P~ 491 (1057)
T 4dx5_A 465 AIYRQFSITIVSAMALSVLVALILTPA 491 (1057)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445567788999999998888775
No 2
>4h33_A LMO2059 protein; bilayers, KVLM, lipidic cubic phase (LCP), pore module, ION membrane protein; HET: OLC; 3.10A {Listeria monocytogenes} PDB: 4h37_A
Probab=25.21 E-value=1e+02 Score=26.66 Aligned_cols=11 Identities=27% Similarity=0.815 Sum_probs=7.8
Q ss_pred chHHhHHHHHh
Q 008877 87 IIWSILTVAVM 97 (550)
Q Consensus 87 ~~WaviTvvvV 97 (550)
-||+++|...|
T Consensus 48 ~y~~~~T~tTv 58 (137)
T 4h33_A 48 LWWAIVTATTV 58 (137)
T ss_dssp HHHHHHHHTTC
T ss_pred HHHHHHHHHcc
Confidence 48888887655
No 3
>4dx5_A Acriflavine resistance protein B; multidrug efflux protein, membrane protein, transpor; HET: LMT OCT D10 HEX D12 MIY C14 LMU DD9 UND GOL; 1.90A {Escherichia coli} PDB: 2hrt_A* 2gif_A* 4dx7_A* 4dx6_A* 3noc_A* 1oy6_A* 1oy9_A* 1oyd_A* 1oy8_A* 1oye_A 2rdd_A* 2w1b_A* 3d9b_A 2i6w_A* 3nog_A* 1t9x_A* 1t9t_A* 1t9v_A* 1t9w_A* 1t9u_A* ...
Probab=18.95 E-value=1.1e+03 Score=27.12 Aligned_cols=28 Identities=11% Similarity=0.190 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccch
Q 008877 191 RTSMDRLYSIAIGGFVAVLVNVLVFPIW 218 (550)
Q Consensus 191 ~~A~~R~~~I~iGi~iallV~~li~P~~ 218 (550)
.....-...+++|+++++++++++-|.-
T Consensus 998 ~~~~~~g~~~~~Gl~~s~~~tl~~~P~l 1025 (1057)
T 4dx5_A 998 GAQNAVGTGVMGGMVTATVLAIFFVPVF 1025 (1057)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444456778889999999998887754
No 4
>3ne5_A Cation efflux system protein CUSA; transmembrane helix, metal transport; 2.90A {Escherichia coli} PDB: 3k07_A 3k0i_A 3kso_A 3kss_A 3t53_A 3t51_A 3t56_A 4dop_A 4dnt_A
Probab=15.00 E-value=5.7e+02 Score=29.51 Aligned_cols=28 Identities=14% Similarity=0.140 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccch
Q 008877 191 RTSMDRLYSIAIGGFVAVLVNVLVFPIW 218 (550)
Q Consensus 191 ~~A~~R~~~I~iGi~iallV~~li~P~~ 218 (550)
.....-.+.+++|+++++++++++-|.-
T Consensus 1014 ~~~~~l~~~~~~Gl~~s~~~tl~v~P~l 1041 (1054)
T 3ne5_A 1014 EVMSRIAAPMIGGMITAPLLSLFIIPAA 1041 (1054)
T ss_dssp HHHHHTTHHHHHHHHHHHHHHHHHTHHH
T ss_pred HHhccCHHHHHhHHHHHHHHHHHHHHHH
Confidence 3444446788899999999999988853
No 5
>3iyz_A Aquaporin-4; water transport, water channel, two-dimensional C membrane protein, baculovirus expression system, glycoprote membrane; 10.00A {Rattus norvegicus}
Probab=13.04 E-value=1e+03 Score=23.93 Aligned_cols=23 Identities=22% Similarity=0.079 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhccc
Q 008877 194 MDRLYSIAIGGFVAVLVNVLVFP 216 (550)
Q Consensus 194 ~~R~~~I~iGi~iallV~~li~P 216 (550)
|--.+.=++|.+++.++-.+++.
T Consensus 248 WVywvgPiiGailaallY~~l~~ 270 (340)
T 3iyz_A 248 WIYWVGPIIGAVLAGALYEYVFC 270 (340)
T ss_pred eehhHHHHHHHHHHHHHHHHHhC
Confidence 33445556787777776655543
No 6
>3aqp_A Probable secdf protein-export membrane protein; translocon, cell membrane, MEM protein transport, translocation, transmembrane, transport; 3.30A {Thermus thermophilus} PDB: 2rrn_A
Probab=12.62 E-value=1.3e+03 Score=25.39 Aligned_cols=25 Identities=20% Similarity=0.138 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccch
Q 008877 194 MDRLYSIAIGGFVAVLVNVLVFPIW 218 (550)
Q Consensus 194 ~~R~~~I~iGi~iallV~~li~P~~ 218 (550)
..-...+++|+++++++++++.|.-
T Consensus 397 ~~fa~~~~~gi~~s~~~al~~~P~l 421 (741)
T 3aqp_A 397 RGFAVILAIGVVASVFSNLVFSRHL 421 (741)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445677788888888888877653
No 7
>3cue_B Transport protein particle 31 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae}
Probab=11.37 E-value=91 Score=30.83 Aligned_cols=29 Identities=17% Similarity=0.367 Sum_probs=25.1
Q ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008877 505 AALSLATFTSLLIEFVARLDHLAEAVDEL 533 (550)
Q Consensus 505 ~~l~~~~~~sllie~v~~~~~~~~~~~el 533 (550)
+-+++..|+-|+.|+|..+++-++.++|+
T Consensus 55 ~~Vs~s~fafLf~EmV~~~~~~~~~~~e~ 83 (283)
T 3cue_B 55 QEASLSAMAFLFQEMISQLHRTCKTAGDF 83 (283)
T ss_dssp CEEEHHHHHHHHHHHHHHHHHHCSSHHHH
T ss_pred chhhHHHHHHHHHHHHHHHHHhcCchHHH
Confidence 56899999999999999999888877663
No 8
>3ne5_A Cation efflux system protein CUSA; transmembrane helix, metal transport; 2.90A {Escherichia coli} PDB: 3k07_A 3k0i_A 3kso_A 3kss_A 3t53_A 3t51_A 3t56_A 4dop_A 4dnt_A
Probab=11.22 E-value=3.2e+02 Score=31.69 Aligned_cols=29 Identities=21% Similarity=0.189 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccchh
Q 008877 191 RTSMDRLYSIAIGGFVAVLVNVLVFPIWA 219 (550)
Q Consensus 191 ~~A~~R~~~I~iGi~iallV~~li~P~~a 219 (550)
.....-...+++|+++++++++++.|.-.
T Consensus 480 ~~~~~~~~~~~~gl~~s~~~~l~~~P~l~ 508 (1054)
T 3ne5_A 480 RLFGPLAFTKTYAMAGAALLAIVVIPILM 508 (1054)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455567788999999999999988644
No 9
>2v50_A Multidrug resistance protein MEXB; DDM, RND, membrane, detergent, transport, cell membrane, transmembrane, membrane protein; HET: LMT; 3.00A {Pseudomonas aeruginosa PA01}
Probab=11.22 E-value=4.3e+02 Score=30.57 Aligned_cols=26 Identities=15% Similarity=0.160 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccch
Q 008877 193 SMDRLYSIAIGGFVAVLVNVLVFPIW 218 (550)
Q Consensus 193 A~~R~~~I~iGi~iallV~~li~P~~ 218 (550)
...-.+.+++|+++++++++++.|.-
T Consensus 467 ~~~~~~~~~~gl~~s~~~~l~l~P~l 492 (1052)
T 2v50_A 467 YRQFSITIVSAMALSVIVALILTPAL 492 (1052)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445677788889999888888754
No 10
>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A
Probab=10.53 E-value=9.1e+02 Score=24.98 Aligned_cols=12 Identities=33% Similarity=0.456 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHH
Q 008877 113 ALGSLLAGILAI 124 (550)
Q Consensus 113 ~lGTllG~~la~ 124 (550)
..|.+.|.++|+
T Consensus 384 ~~~~~~g~~~~~ 395 (473)
T 2zy9_A 384 GVGLLLGLTLSF 395 (473)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 344455555544
Done!