Query 008877
Match_columns 550
No_of_seqs 321 out of 1661
Neff 6.8
Searched_HMMs 13730
Date Mon Mar 25 13:48:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008877.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/008877hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1st6a3 a.24.9.1 (A:253-371) V 27.9 73 0.0054 25.3 6.9 50 345-394 66-117 (119)
2 d1st6a4 a.24.9.1 (A:372-488) V 27.6 77 0.0056 25.2 6.9 51 345-395 57-109 (117)
3 d1st6a5 a.24.9.1 (A:489-646) V 20.4 77 0.0056 26.5 5.9 52 345-396 50-103 (158)
4 d1j1ja_ a.118.16.1 (A:) Transl 15.8 2.5E+02 0.018 23.8 8.7 21 517-537 135-155 (217)
5 d1tlha_ a.150.1.1 (A:) Anti-si 14.5 67 0.0049 24.0 3.5 27 508-534 9-40 (89)
6 d1mnta_ a.43.1.1 (A:) Mnt repr 12.6 42 0.0031 24.0 1.7 25 515-542 30-54 (66)
7 d1d0qa_ g.41.3.2 (A:) Zinc-bin 11.1 55 0.004 25.0 2.2 26 516-541 69-96 (102)
8 d1t98a2 a.47.6.1 (A:119-281) C 7.6 5.2E+02 0.038 20.8 7.6 48 343-396 99-146 (163)
9 d2b0ha1 a.24.9.2 (A:1838-1973) 5.8 5.7E+02 0.041 19.4 10.7 56 312-367 45-102 (136)
10 d2r6gf1 e.70.1.1 (F:13-260) Ma 5.7 7.9E+02 0.057 21.1 8.2 7 170-176 60-66 (248)
No 1
>d1st6a3 a.24.9.1 (A:253-371) Vinculin {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=27.94 E-value=73 Score=25.34 Aligned_cols=50 Identities=8% Similarity=0.092 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccCCch--HHHHHHHHHHHHHHHhhhhh
Q 008877 345 QSEIQEVTSQAAELVRNLGKDIGNMKRSVK--TCLLKRLHSSTERLQGSIDM 394 (550)
Q Consensus 345 ~~~l~~l~~e~~~vL~~La~~l~~~~~~~~--~~~~~~l~~a~e~Lq~~l~~ 394 (550)
+.++..++.++...-..|++--+.++-.+| ..+...+.+.+++|+.+++.
T Consensus 66 r~~Il~~c~ei~~lt~qLadLr~~G~G~sPeA~~lA~qi~~kL~~L~~~v~~ 117 (119)
T d1st6a3 66 RREILGTCKTLGQMTDQLADLRARGQGATPMAMQKAQQVSQGLDLLTAKVEN 117 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTTCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 466777888888888888877666665555 66688888888888888764
No 2
>d1st6a4 a.24.9.1 (A:372-488) Vinculin {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=27.60 E-value=77 Score=25.16 Aligned_cols=51 Identities=18% Similarity=0.189 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccCCch--HHHHHHHHHHHHHHHhhhhhc
Q 008877 345 QSEIQEVTSQAAELVRNLGKDIGNMKRSVK--TCLLKRLHSSTERLQGSIDMH 395 (550)
Q Consensus 345 ~~~l~~l~~e~~~vL~~La~~l~~~~~~~~--~~~~~~l~~a~e~Lq~~l~~~ 395 (550)
+.++..++.++......|++--+.+.-.+| ..+...+.+.+++|+.+++..
T Consensus 57 r~~il~lc~ei~~lt~qLadLr~~GkG~sPeA~~lA~qi~~kL~~L~~~v~~A 109 (117)
T d1st6a4 57 RDDILRSLGEISALTAKLSDLRRHGKGDSPEARALAKQIATSLQNLQSKTNRA 109 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCCSSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677777777777777777666655555 666888888888888887653
No 3
>d1st6a5 a.24.9.1 (A:489-646) Vinculin {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=20.44 E-value=77 Score=26.46 Aligned_cols=52 Identities=10% Similarity=0.149 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccCCch--HHHHHHHHHHHHHHHhhhhhcc
Q 008877 345 QSEIQEVTSQAAELVRNLGKDIGNMKRSVK--TCLLKRLHSSTERLQGSIDMHS 396 (550)
Q Consensus 345 ~~~l~~l~~e~~~vL~~La~~l~~~~~~~~--~~~~~~l~~a~e~Lq~~l~~~~ 396 (550)
+.++..++.++......|++--+.+.--+| ..+...+.+.+++|+.+++..-
T Consensus 50 r~~Il~~C~el~~l~~~LadLr~~G~G~sPeA~~lA~qi~~kL~dL~~~v~~Av 103 (158)
T d1st6a5 50 RQDLLAKCDRVDQLAAQLADLAARGEGESPQARAIAAQLQDSLKDLKARMQEAM 103 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSTTSSCCSSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466677777788888888777666554445 5667778888888888876644
No 4
>d1j1ja_ a.118.16.1 (A:) Translin {Human (Homo sapiens) [TaxId: 9606]}
Probab=15.75 E-value=2.5e+02 Score=23.84 Aligned_cols=21 Identities=24% Similarity=0.313 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHhhcc
Q 008877 517 IEFVARLDHLAEAVDELSKLA 537 (550)
Q Consensus 517 ie~v~~~~~~~~~~~el~~~a 537 (550)
|....-|.+|.|...||.+.|
T Consensus 135 v~~~dYL~Gl~DltGEL~R~a 155 (217)
T d1j1ja_ 135 LDVEDYLSGVLILASELSRLS 155 (217)
T ss_dssp CCHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHH
Confidence 344566777777777777664
No 5
>d1tlha_ a.150.1.1 (A:) Anti-sigma factor AsiA {Bacteriophage T4 [TaxId: 10665]}
Probab=14.53 E-value=67 Score=23.98 Aligned_cols=27 Identities=22% Similarity=0.423 Sum_probs=21.6
Q ss_pred hHHHHHHHHH-----HHHHHHHHHHHHHHHHh
Q 008877 508 SLATFTSLLI-----EFVARLDHLAEAVDELS 534 (550)
Q Consensus 508 ~~~~~~slli-----e~v~~~~~~~~~~~el~ 534 (550)
-.+|.||+|| |+|.+=++.|+=..||+
T Consensus 9 eIit~aSiLIK~~~edI~~~q~~FI~FLNE~G 40 (89)
T d1tlha_ 9 EIITVASILIKFSREDIVENRANFIAFLNEIG 40 (89)
T ss_dssp HHHHHHHHHHHHTTHHHHHSHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHccHHHHHHhHHHHHHHHHHhC
Confidence 4789999999 56777788887777765
No 6
>d1mnta_ a.43.1.1 (A:) Mnt repressor {Salmonella bacteriophage P22 [TaxId: 10754]}
Probab=12.56 E-value=42 Score=24.03 Aligned_cols=25 Identities=12% Similarity=0.353 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCCCCC
Q 008877 515 LLIEFVARLDHLAEAVDELSKLAKFKHE 542 (550)
Q Consensus 515 llie~v~~~~~~~~~~~el~~~a~f~~~ 542 (550)
+=-|+|+||| +++++-+..+.|++.
T Consensus 30 mNaEIV~rLe---~s~~~~~~~~~~~d~ 54 (66)
T d1mnta_ 30 MNSELLQIVQ---DALSKPSPVTGYRND 54 (66)
T ss_dssp THHHHHHHHH---HHHHCCCCSSSCCCS
T ss_pred hhHHHHHHHH---HHhcCCCCchHHHhH
Confidence 3459999999 677777777777654
No 7
>d1d0qa_ g.41.3.2 (A:) Zinc-binding domain of DNA primase {Bacillus stearothermophilus [TaxId: 1422]}
Probab=11.15 E-value=55 Score=24.99 Aligned_cols=26 Identities=19% Similarity=0.310 Sum_probs=20.0
Q ss_pred HHHHHHHHHHH--HHHHHHHhhccCCCC
Q 008877 516 LIEFVARLDHL--AEAVDELSKLAKFKH 541 (550)
Q Consensus 516 lie~v~~~~~~--~~~~~el~~~a~f~~ 541 (550)
.|+||.+++++ .||+++|+++++..=
T Consensus 69 ~i~fv~~~~~~sf~eAv~~La~~~gi~l 96 (102)
T d1d0qa_ 69 AFTFLMDIEGIPFVEAAKRLAAKAGVDL 96 (102)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHCcCHHHHHHHHHHHhCCCC
Confidence 46667777764 799999999999753
No 8
>d1t98a2 a.47.6.1 (A:119-281) Chromosome partition protein MukF (KicB), C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=7.59 E-value=5.2e+02 Score=20.80 Aligned_cols=48 Identities=10% Similarity=0.042 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccCCchHHHHHHHHHHHHHHHhhhhhcc
Q 008877 343 TFQSEIQEVTSQAAELVRNLGKDIGNMKRSVKTCLLKRLHSSTERLQGSIDMHS 396 (550)
Q Consensus 343 ~f~~~l~~l~~e~~~vL~~La~~l~~~~~~~~~~~~~~l~~a~e~Lq~~l~~~~ 396 (550)
.+++.+...+.....-|..+.+++.+.. .+..+++.+.+||.+++.-.
T Consensus 99 ELqdtL~aagd~lqa~Ll~IQ~a~~~~~------~l~~vd~l~~~lq~klDRI~ 146 (163)
T d1t98a2 99 ELQDTLEAAGDKLQANLLRIQDATMTHD------DLHFVDRLVFDLQSKLDRII 146 (163)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSSS------SCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHcCCc------hHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666666666666654322 23456777888888887654
No 9
>d2b0ha1 a.24.9.2 (A:1838-1973) Talin 1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=5.76 E-value=5.7e+02 Score=19.44 Aligned_cols=56 Identities=13% Similarity=0.114 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhc--ccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008877 312 VGAVLRYCAYEVMALHGVLHS--EIQAPYNLRVTFQSEIQEVTSQAAELVRNLGKDIG 367 (550)
Q Consensus 312 l~~~lr~~a~~l~aL~~~l~s--~~qap~~lr~~f~~~l~~l~~e~~~vL~~La~~l~ 367 (550)
|+...+.++..+..|-.+... ......+.+..+-+....++..+..++..-...-.
T Consensus 45 L~~~a~~~a~~~~~L~~~~k~~A~~~~~~~~q~~ll~~ak~v~~s~~~Lv~aak~~~~ 102 (136)
T d2b0ha1 45 LGPLANQLTSDYGRLASQAKPAAVAAENEEIGAHIKHRVQELGHGCSALVTKAGALQC 102 (136)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 455566666666666654221 11123456777777778888887777776655543
No 10
>d2r6gf1 e.70.1.1 (F:13-260) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=5.73 E-value=7.9e+02 Score=21.07 Aligned_cols=7 Identities=0% Similarity=-0.221 Sum_probs=3.1
Q ss_pred HHHHHHH
Q 008877 170 RVILFTY 176 (550)
Q Consensus 170 ~ia~lT~ 176 (550)
+++++.|
T Consensus 60 ~~~l~~F 66 (248)
T d2r6gf1 60 MAGMGLF 66 (248)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3444444
Done!