BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008879
(550 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O03176|CYB_LATCH Cytochrome b OS=Latimeria chalumnae GN=mt-cyb PE=3 SV=1
Length = 380
Score = 42.0 bits (97), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 41/80 (51%), Gaps = 5/80 (6%)
Query: 124 GACLLFICIFHFCCKRKPYG--YSKTAYALSLIFLIFFTIAAIIGCVVLYAGQVKFRGST 181
GA L FICI+ + YG K + + +I L+ I A +G V+ + GQ+ F G+T
Sbjct: 86 GASLFFICIYLHVARGLYYGSYLQKETWNIGVILLMLVMITAFVGYVLPW-GQMSFWGAT 144
Query: 182 KKT--LEYVVYQADTTVQKL 199
T L V Y DT VQ +
Sbjct: 145 VITNLLSAVPYIGDTLVQWI 164
>sp|Q95920|CYB_POLOR Cytochrome b OS=Polypterus ornatipinnis GN=mt-cyb PE=3 SV=1
Length = 380
Score = 39.3 bits (90), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 43/79 (54%), Gaps = 7/79 (8%)
Query: 124 GACLLFICIFHFCCKRKPYG---YSKTAYALSLIFLIFFTIAAIIGCVVLYAGQVKFRGS 180
GA L FICI+ + YG Y++T + + +I L+ + A +G V+ + GQ+ F G+
Sbjct: 86 GASLFFICIYLHIARGLYYGSYLYTET-WNMGVILLLLTMMTAFVGYVLPW-GQMSFWGA 143
Query: 181 TKKT--LEYVVYQADTTVQ 197
T T L + Y DT VQ
Sbjct: 144 TVITNLLSAIPYIGDTLVQ 162
>sp|Q9T7P0|CYB_TACSP Cytochrome b OS=Tachyoryctes splendens GN=MT-CYB PE=3 SV=1
Length = 379
Score = 37.0 bits (84), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 71/169 (42%), Gaps = 18/169 (10%)
Query: 124 GACLLFICIFHFCCKRKPYGYSKTAYALSL-IFLIFFTIAAIIGCVVLYAGQVKFRGSTK 182
GA + FIC+F + YG + ++ I L+F T+A VL GQ+ F G+T
Sbjct: 86 GASMFFICLFLHIGRGTYYGSYTLSETWNIGILLVFSTMATAFLGYVLPWGQMSFWGATV 145
Query: 183 KT--LEYVVYQADTTVQKLQ-EVSNNLATAKQISVQKVFLPSNVQSDI-----------D 228
T L + Y T V+ + S + AT + +P + + +
Sbjct: 146 ITNLLSAIPYIGTTLVEWIWGGFSVDKATLSRFFAFHFIMPFIITALVMVHLLFLHETGS 205
Query: 229 NVESKLNSSASTVADETAKNSHDIRDLLDSVRLALILIAAIMLVLTFLG 277
N + LNS+A + + I+D+L V L IL++ + LG
Sbjct: 206 NNPTGLNSNADKIPFHPY---YTIKDILGFVLLCFILLSLTLFTPDLLG 251
>sp|Q7YC73|CYB_APODA Cytochrome b OS=Apomys datae GN=MT-CYB PE=3 SV=1
Length = 381
Score = 37.0 bits (84), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 69/169 (40%), Gaps = 18/169 (10%)
Query: 124 GACLLFICIFHFCCKRKPYGYSKTAYALSL-IFLIFFTIAAIIGCVVLYAGQVKFRGSTK 182
GA + FIC+F + YG ++ I L+F T+A VL GQ+ F G+T
Sbjct: 86 GASMFFICLFLHVGRGMYYGSYTFMETWNIGIILLFATMATAFMGYVLPWGQMSFWGATV 145
Query: 183 KT--LEYVVYQADTTVQKLQ-EVSNNLATAKQISVQKVFLPSNVQSDI-----------D 228
T L + Y T V+ + S + AT + LP + + +
Sbjct: 146 ITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRFFAFHFILPFIIAALVIVHLLFLHETGS 205
Query: 229 NVESKLNSSASTVADETAKNSHDIRDLLDSVRLALILIAAIMLVLTFLG 277
N + LNS A + + I+DLL + L L L+ ++ LG
Sbjct: 206 NNPTGLNSDADKIPFHP---YYTIKDLLGVLMLILFLMTLVLFFPDLLG 251
>sp|P34865|CYB_CARCH Cytochrome b OS=Carcharodon carcharias GN=mt-cyb PE=3 SV=1
Length = 381
Score = 36.2 bits (82), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 37/78 (47%), Gaps = 5/78 (6%)
Query: 124 GACLLFICIFHFCCKRKPYG--YSKTAYALSLIFLIFFTIAAIIGCVVLYAGQVKFRGST 181
GA L F+CI+ + YG K + + +I L A +G V+ + GQ+ F G+T
Sbjct: 87 GASLFFVCIYFHIARGLYYGSYLYKETWNIGVILLFLLMATAFVGYVLPW-GQMSFWGAT 145
Query: 182 KKT--LEYVVYQADTTVQ 197
T L Y DT VQ
Sbjct: 146 VITNLLSAFPYIGDTLVQ 163
>sp|Q9T9I2|CYB_HIMCH Cytochrome b OS=Himantura chaophraya GN=mt-cyb PE=3 SV=1
Length = 380
Score = 35.8 bits (81), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 38/78 (48%), Gaps = 5/78 (6%)
Query: 124 GACLLFICIFHFCCKRKPYG--YSKTAYALSLIFLIFFTIAAIIGCVVLYAGQVKFRGST 181
GA L FICI+ + YG K + + +I L+ A +G V+ + GQ+ F G+T
Sbjct: 87 GASLFFICIYLHIARGLYYGSYIYKETWNIGVIILLLLMATAFVGYVLPW-GQMSFWGAT 145
Query: 182 KKT--LEYVVYQADTTVQ 197
T L + Y D VQ
Sbjct: 146 VITNLLSALPYIGDMLVQ 163
>sp|Q8LWP6|CYB_RANSI Cytochrome b OS=Ranodon sibiricus GN=mt-cyb PE=3 SV=1
Length = 380
Score = 35.8 bits (81), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 37/78 (47%), Gaps = 5/78 (6%)
Query: 124 GACLLFICIFHFCCKRKPYG--YSKTAYALSLIFLIFFTIAAIIGCVVLYAGQVKFRGST 181
GA FICI+ + YG K + + +I L A +G V+ + GQ+ F G+T
Sbjct: 87 GASFFFICIYLHIGRGLYYGSYMYKETWNIGVILLFLVMATAFVGYVLPW-GQMSFWGAT 145
Query: 182 KKT--LEYVVYQADTTVQ 197
T L V Y D+ VQ
Sbjct: 146 VITNLLSAVPYMGDSLVQ 163
>sp|P34869|CYB_HETFR Cytochrome b OS=Heterodontus francisci GN=mt-cyb PE=3 SV=1
Length = 381
Score = 35.8 bits (81), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 37/78 (47%), Gaps = 5/78 (6%)
Query: 124 GACLLFICIFHFCCKRKPYG--YSKTAYALSLIFLIFFTIAAIIGCVVLYAGQVKFRGST 181
GA L FICI+ + YG K + + +I L A +G V+ + GQ+ F G+T
Sbjct: 87 GASLFFICIYLHIARGLYYGSYLLKETWNIGVILLFLLMATAFVGYVLPW-GQMSFWGAT 145
Query: 182 KKT--LEYVVYQADTTVQ 197
T L Y DT VQ
Sbjct: 146 VITNLLSAFPYIGDTLVQ 163
>sp|Q9TF31|CYB_SPEMO Cytochrome b OS=Spermophilus mohavensis GN=MT-CYB PE=3 SV=1
Length = 379
Score = 35.8 bits (81), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 74/161 (45%), Gaps = 13/161 (8%)
Query: 124 GACLLFICIFHFCCKRKPYG---YSKTAYALSLIFLIFFTIAAIIGCVVLYAGQVKFRGS 180
GA + FIC+F + YG Y +T + + +I L+F T+A VL GQ+ F G+
Sbjct: 86 GASMFFICLFLHVGRGLYYGSYTYFET-WNIGVI-LLFATMATAFMGYVLPWGQMSFWGA 143
Query: 181 TKKT--LEYVVYQADTTVQKLQ-EVSNNLATAKQISVQKVFLPSNVQSDIDN-----VES 232
T T L + Y T V+ + S + AT + LP + + + E+
Sbjct: 144 TVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRFFAFHFILPFIIAALVXVHLLFLHET 203
Query: 233 KLNSSASTVADETAKNSHDIRDLLDSVRLALILIAAIMLVL 273
N+ + V+D H + D++ + L+++A + LVL
Sbjct: 204 GSNNPSGLVSDSDKIPFHPYYTIKDALGILLLIMALMTLVL 244
>sp|Q9ZZ42|CYB_SQUAC Cytochrome b OS=Squalus acanthias GN=mt-cyb PE=3 SV=1
Length = 381
Score = 35.4 bits (80), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 37/78 (47%), Gaps = 5/78 (6%)
Query: 124 GACLLFICIFHFCCKRKPYG--YSKTAYALSLIFLIFFTIAAIIGCVVLYAGQVKFRGST 181
GA L FIC++ + YG K A+ + +I L A +G V+ + GQ+ F G+T
Sbjct: 87 GASLFFICVYLHIARGLYYGSYLFKEAWNIGVILLFLLMATAFVGYVLPW-GQMSFWGAT 145
Query: 182 KKT--LEYVVYQADTTVQ 197
T L Y D VQ
Sbjct: 146 VITNLLSAFPYIGDMLVQ 163
>sp|P34871|CYB_ISUPA Cytochrome b OS=Isurus paucus GN=mt-cyb PE=3 SV=1
Length = 381
Score = 35.0 bits (79), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 37/78 (47%), Gaps = 5/78 (6%)
Query: 124 GACLLFICIFHFCCKRKPYG--YSKTAYALSLIFLIFFTIAAIIGCVVLYAGQVKFRGST 181
GA L F+C++ + YG K + + +I L A +G V+ + GQ+ F G+T
Sbjct: 87 GASLFFVCVYIHIARGLYYGSYLYKETWNIGVILLFLLMATAFVGYVLPW-GQMSFWGAT 145
Query: 182 KKT--LEYVVYQADTTVQ 197
T L Y DT VQ
Sbjct: 146 VITNLLSAFPYIGDTLVQ 163
>sp|Q86H13|PDE4_DICDI cAMP-specific 3',5'-cAMP phosphodiesterase 4 OS=Dictyostelium
discoideum GN=Pde4 PE=1 SV=2
Length = 1039
Score = 34.7 bits (78), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 62/133 (46%), Gaps = 14/133 (10%)
Query: 112 LFVIAAIWFLGFGACLLFICIFHF-CCKRKPYG----YSKTAYALSLIFLIFFTIAAIIG 166
+ + I+ + +G C+LF+ F+ KPY +K + L+ A++G
Sbjct: 311 IVIFCIIFMINYGCCILFMDWFYIDTTGTKPYRGRILATKIHWGEEATILVSM---ALLG 367
Query: 167 CVVLYAGQVKFRGSTKKTLEYVVYQADTTVQKLQEVSNNLATAKQISVQKVFLPSNVQSD 226
C+ + KF S + + YQ +Q LQ+ L T IS++K+ L + ++
Sbjct: 368 CIFIVLE--KFIKSYARCVAEQHYQ----IQCLQKEKEKLQTEINISLKKLDLDTPIEKI 421
Query: 227 IDNVESKLNSSAS 239
+D + S +N+S S
Sbjct: 422 MDILRSMINTSES 434
>sp|P34870|CYB_ISUOX Cytochrome b OS=Isurus oxyrhynchus GN=mt-cyb PE=3 SV=1
Length = 381
Score = 34.7 bits (78), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 36/78 (46%), Gaps = 5/78 (6%)
Query: 124 GACLLFICIFHFCCKRKPYG--YSKTAYALSLIFLIFFTIAAIIGCVVLYAGQVKFRGST 181
GA L F+CI+ + YG K + + +I L A +G V+ + GQ+ F G+T
Sbjct: 87 GASLFFVCIYFHIARGLYYGSYLYKETWNIGVILLFLLMATAFVGYVLPW-GQMSFWGAT 145
Query: 182 KKT--LEYVVYQADTTVQ 197
T L Y D VQ
Sbjct: 146 VITNLLSAFPYVGDVLVQ 163
>sp|Q5ZN98|CYB_ZAGBR Cytochrome b OS=Zaglossus bruijni GN=MT-CYB PE=3 SV=1
Length = 379
Score = 34.3 bits (77), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 68/170 (40%), Gaps = 20/170 (11%)
Query: 124 GACLLFICIFHFCCKRKPYGYSKTAYALSLIFLIFFTI--AAIIGCVVLYAGQVKFRGST 181
GA L FICIF + YG ++ L+ FT+ A +G V+ + GQ+ F G+T
Sbjct: 86 GASLFFICIFLHIGRGLYYGSYMNTETWNIGVLLLFTVMATAFVGYVLPW-GQMSFWGAT 144
Query: 182 KKT--LEYVVYQADTTVQKLQ-EVSNNLATAKQISVQKVFLPSNV-----------QSDI 227
T L + Y T V+ + S + AT + LP V
Sbjct: 145 VITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRFFAFHFILPFVVAALTIIHLLFLHETG 204
Query: 228 DNVESKLNSSASTVADETAKNSHDIRDLLDSVRLALILIAAIMLVLTFLG 277
N S LNS + + + I+DLL L+L+ ++ LG
Sbjct: 205 SNNPSGLNSDSDKIPFHP---YYSIKDLLGFFIATLVLMLLVLFTPDLLG 251
>sp|P29663|CYB_AMICA Cytochrome b OS=Amia calva GN=mt-cyb PE=3 SV=2
Length = 379
Score = 34.3 bits (77), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 38/78 (48%), Gaps = 5/78 (6%)
Query: 124 GACLLFICIFHFCCKRKPYG--YSKTAYALSLIFLIFFTIAAIIGCVVLYAGQVKFRGST 181
GA L FIC++ + YG K + + ++ + + A +G V+ + GQ+ F G+T
Sbjct: 86 GASLFFICLYLHIARGLYYGSYLYKETWNVGVVLFLLVMMTAFVGYVLPW-GQMSFWGAT 144
Query: 182 KKT--LEYVVYQADTTVQ 197
T L Y DT VQ
Sbjct: 145 VITNLLSAFPYIGDTLVQ 162
>sp|P34868|CYB_GALCU Cytochrome b OS=Galeocerdo cuvier GN=mt-cyb PE=3 SV=1
Length = 381
Score = 33.9 bits (76), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 37/78 (47%), Gaps = 5/78 (6%)
Query: 124 GACLLFICIFHFCCKRKPYG--YSKTAYALSLIFLIFFTIAAIIGCVVLYAGQVKFRGST 181
GA L FICI+ + YG K + + +I L A +G V+ + GQ+ F G+T
Sbjct: 87 GASLFFICIYLHIARGLYYGSYLYKETWNIGVILLFLLMATAFVGYVLPW-GQMSFWGAT 145
Query: 182 KKT--LEYVVYQADTTVQ 197
T L Y +T VQ
Sbjct: 146 VITNLLSAFPYVGNTLVQ 163
>sp|Q8WZ42|TITIN_HUMAN Titin OS=Homo sapiens GN=TTN PE=1 SV=4
Length = 34350
Score = 33.9 bits (76), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
Query: 325 NEYVQNPAAHTALDSIIPCVDKATAQDTLTRTKEVTS---QLVEVVNEVITNVSNINFAP 381
E V+ A TA+ ++ DKA Q+ +RTKEV + + + V +E I + F P
Sbjct: 464 QEQVRKEAEKTAVTKVVVAADKAKEQELKSRTKEVITTKQEQMHVTHEQIRKETEKTFVP 523
Query: 382 AFV 384
V
Sbjct: 524 KVV 526
>sp|P34873|CYB_PRIGL Cytochrome b OS=Prionace glauca GN=mt-cyb PE=3 SV=1
Length = 381
Score = 33.9 bits (76), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 36/78 (46%), Gaps = 5/78 (6%)
Query: 124 GACLLFICIFHFCCKRKPYG--YSKTAYALSLIFLIFFTIAAIIGCVVLYAGQVKFRGST 181
GA L FICI+ + YG K + + +I L A +G V+ + GQ+ F G+T
Sbjct: 87 GASLFFICIYLHIARGLYYGSYLYKETWNIGVILLFLLMATAFVGYVLPW-GQMSFWGAT 145
Query: 182 KKT--LEYVVYQADTTVQ 197
T L Y D VQ
Sbjct: 146 VITNLLSAFPYIGDILVQ 163
>sp|Q8W9E4|CYB_SCIAE Cytochrome b OS=Sciurus aestuans GN=MT-CYB PE=3 SV=1
Length = 379
Score = 33.5 bits (75), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 49/103 (47%), Gaps = 8/103 (7%)
Query: 124 GACLLFICIFHFCCKRKPYG---YSKTAYALSLIFLIFFTIAAIIGCVVLYAGQVKFRGS 180
GACL FIC+F + YG Y +T + + +I L A +G V+ + GQ+ F G+
Sbjct: 86 GACLFFICLFLHVGRGLYYGSYTYFET-WNIGVILLFAVMATAFMGYVLPW-GQMSFWGA 143
Query: 181 TKKT--LEYVVYQADTTVQKLQ-EVSNNLATAKQISVQKVFLP 220
T T L + Y T V+ + S + AT + S LP
Sbjct: 144 TVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRFSPFHFILP 186
>sp|O79413|CYB_SCYCA Cytochrome b OS=Scyliorhinus canicula GN=mt-cyb PE=3 SV=1
Length = 381
Score = 33.5 bits (75), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 3/65 (4%)
Query: 122 GFGACLLFICIFHFCCKRKPYG--YSKTAYALSLIFLIFFTIAAIIGCVVLYAGQVKFRG 179
+GA FICI+ + YG +K A+ + ++ L A +G V+ + GQ+ F G
Sbjct: 85 AYGASFFFICIYLHIARGLYYGSYLNKEAWNIGVVLLFLLMATAFVGYVLPW-GQMSFWG 143
Query: 180 STKKT 184
+T T
Sbjct: 144 ATVIT 148
>sp|P28830|VE6_HPV14 Protein E6 OS=Human papillomavirus type 14 GN=E6 PE=3 SV=1
Length = 171
Score = 33.5 bits (75), Expect = 4.5, Method: Composition-based stats.
Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 7/71 (9%)
Query: 420 NATQALSNYVCQVSPSGVCTTTGRLTPPLYDDMTAAVNLCNGLENYGPFLAELQDCTFVR 479
+ T+ S+++ P+ +C L PL DD N C G FL L+ C F +
Sbjct: 23 DTTETKSSFLEPPLPATICGLANLLEIPL-DDCLIPCNFC------GNFLTHLEVCEFDQ 75
Query: 480 ETFNEIYRDHC 490
+ + I++ HC
Sbjct: 76 KKLSLIWKGHC 86
>sp|P34875|CYB_SPHTV Cytochrome b OS=Sphyrna tiburo vespertina GN=mt-cyb PE=3 SV=1
Length = 381
Score = 33.1 bits (74), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 37/78 (47%), Gaps = 5/78 (6%)
Query: 124 GACLLFICIFHFCCKRKPYG--YSKTAYALSLIFLIFFTIAAIIGCVVLYAGQVKFRGST 181
GA L FIC++ + YG K + + +I L A +G V+ + GQ+ F G+T
Sbjct: 87 GASLFFICVYLHIARGLYYGSYLYKETWNIGVILLFLLMATAFVGYVLPW-GQMSFWGAT 145
Query: 182 KKT--LEYVVYQADTTVQ 197
T L Y +T VQ
Sbjct: 146 VITNLLSAFPYIGNTLVQ 163
>sp|Q8LWU4|CYB_MACPR Cytochrome b OS=Macroscelides proboscideus GN=MT-CYB PE=3 SV=1
Length = 379
Score = 33.1 bits (74), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 41/79 (51%), Gaps = 7/79 (8%)
Query: 124 GACLLFICIFHFCCKRKPYG---YSKTAYALSLIFLIFFTIAAIIGCVVLYAGQVKFRGS 180
GA L FIC+F + YG YS+T + + ++ L+F T+A VL GQ+ F G+
Sbjct: 86 GASLFFICLFIHAGRGIYYGSYLYSET-WNIGVV-LLFITMATAFVGYVLPWGQMSFWGA 143
Query: 181 TKKT--LEYVVYQADTTVQ 197
T T L + Y T V+
Sbjct: 144 TVITNLLSAIPYVGSTLVE 162
>sp|P92657|CYB_MONMO Cytochrome b OS=Monodon monoceros GN=MT-CYB PE=3 SV=1
Length = 379
Score = 33.1 bits (74), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 40/78 (51%), Gaps = 5/78 (6%)
Query: 124 GACLLFICIFHFCCKRKPYG--YSKTAYALSLIFLIFFTIAAIIGCVVLYAGQVKFRGST 181
GA + FIC++ + YG S+ + + ++ L+ A +G V+ + GQ+ F G+T
Sbjct: 86 GASMFFICLYTHIGRSLYYGSHTSQETWNIGVLLLLMIMATAFVGYVLPW-GQMSFWGAT 144
Query: 182 KKT--LEYVVYQADTTVQ 197
T L + Y +T V+
Sbjct: 145 VITNLLSAIPYIGNTLVE 162
>sp|Q2XVR5|SC4AA_TETNG Sodium channel protein type 4 subunit alpha A OS=Tetraodon
nigroviridis GN=scn4aa PE=3 SV=2
Length = 1863
Score = 32.7 bits (73), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 27/45 (60%)
Query: 247 KNSHDIRDLLDSVRLALILIAAIMLVLTFLGFLFSIFGMQVLVYV 291
K + IR LL ++ ++L + I L+L + F+FSIFGM YV
Sbjct: 1483 KGARGIRTLLFALMMSLPALFNIGLLLFLIMFIFSIFGMSNFAYV 1527
>sp|Q67UQ7|MRS2B_ORYSJ Magnesium transporter MRS2-B OS=Oryza sativa subsp. japonica
GN=MRS2-B PE=2 SV=1
Length = 436
Score = 32.3 bits (72), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 43/94 (45%), Gaps = 17/94 (18%)
Query: 227 IDNVESKLNSSASTVADETAKNSHDIRDL-LDSVRLALILIAAIMLVLTFL----GFLFS 281
ID+ +KL S + D + D ++ LD+VR LI ++ TF+ G +
Sbjct: 335 IDSTLNKLTSLKEYIDD-----TEDFINIQLDNVRNQLIQFELLLTTATFVVAIFGVVAG 389
Query: 282 IFGMQVLVYVLVI---FGWIL----VTGTFILCG 308
IFGM V I F W+L V G FI CG
Sbjct: 390 IFGMNFETSVFSIQNAFQWVLIITGVIGAFIFCG 423
>sp|A2YFN7|MRS2B_ORYSI Magnesium transporter MRS2-B OS=Oryza sativa subsp. indica
GN=MRS2-B PE=3 SV=1
Length = 436
Score = 32.3 bits (72), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 43/94 (45%), Gaps = 17/94 (18%)
Query: 227 IDNVESKLNSSASTVADETAKNSHDIRDL-LDSVRLALILIAAIMLVLTFL----GFLFS 281
ID+ +KL S + D + D ++ LD+VR LI ++ TF+ G +
Sbjct: 335 IDSTLNKLTSLKEYIDD-----TEDFINIQLDNVRNQLIQFELLLTTATFVVAIFGVVAG 389
Query: 282 IFGMQVLVYVLVI---FGWIL----VTGTFILCG 308
IFGM V I F W+L V G FI CG
Sbjct: 390 IFGMNFETSVFSIQNAFQWVLIITGVIGAFIFCG 423
>sp|Q2XVR7|SC4AA_TAKRU Sodium channel protein type 4 subunit alpha A OS=Takifugu rubripes
GN=scn4aa PE=3 SV=1
Length = 1892
Score = 32.3 bits (72), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 27/45 (60%)
Query: 247 KNSHDIRDLLDSVRLALILIAAIMLVLTFLGFLFSIFGMQVLVYV 291
K + IR LL ++ ++L + I L+L + F+FSIFGM YV
Sbjct: 1503 KGARGIRTLLFALMMSLPALFNIGLLLFLIMFIFSIFGMSNFAYV 1547
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.324 0.137 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 190,204,247
Number of Sequences: 539616
Number of extensions: 7605935
Number of successful extensions: 29181
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 49
Number of HSP's that attempted gapping in prelim test: 29125
Number of HSP's gapped (non-prelim): 78
length of query: 550
length of database: 191,569,459
effective HSP length: 123
effective length of query: 427
effective length of database: 125,196,691
effective search space: 53458987057
effective search space used: 53458987057
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 64 (29.3 bits)