Query 008879
Match_columns 550
No_of_seqs 167 out of 224
Neff 5.9
Searched_HMMs 46136
Date Thu Mar 28 17:44:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008879.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008879hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd07912 Tweety_N N-terminal do 100.0 2.7E-41 5.9E-46 359.3 30.3 361 86-520 20-406 (418)
2 PF04906 Tweety: Tweety; Inte 100.0 5.5E-35 1.2E-39 312.5 21.8 361 87-519 1-382 (406)
3 KOG4433 Tweety transmembrane/c 100.0 5.7E-29 1.2E-33 261.7 27.0 240 86-334 24-284 (526)
4 PF05478 Prominin: Prominin; 98.8 2.6E-06 5.6E-11 99.5 28.5 49 144-195 137-185 (806)
5 KOG4331 Polytopic membrane pro 97.4 0.0022 4.7E-08 73.5 13.5 65 466-530 757-821 (865)
6 cd07912 Tweety_N N-terminal do 96.9 0.14 3E-06 56.0 20.9 10 322-331 264-273 (418)
7 PF04906 Tweety: Tweety; Inte 95.0 0.72 1.6E-05 50.3 15.8 177 122-302 35-235 (406)
8 KOG4433 Tweety transmembrane/c 95.0 1.2 2.5E-05 49.2 16.9 49 468-518 357-405 (526)
9 PF05478 Prominin: Prominin; 92.9 2 4.2E-05 51.0 15.1 53 470-522 740-792 (806)
10 PF00957 Synaptobrevin: Synapt 83.4 3.8 8.2E-05 34.8 6.4 18 227-244 36-53 (89)
11 KOG0860 Synaptobrevin/VAMP-lik 78.4 21 0.00046 32.5 9.5 33 213-245 48-80 (116)
12 PF13908 Shisa: Wnt and FGF in 76.6 1.3 2.7E-05 42.8 1.3 22 116-137 83-104 (179)
13 PF06749 DUF1218: Protein of u 74.6 7.5 0.00016 34.0 5.5 14 163-176 48-61 (97)
14 PF07889 DUF1664: Protein of u 70.7 51 0.0011 30.5 10.2 64 165-238 18-81 (126)
15 KOG4331 Polytopic membrane pro 69.2 20 0.00044 42.2 8.8 104 99-207 94-210 (865)
16 PF04156 IncA: IncA protein; 66.0 42 0.00092 32.2 9.3 35 278-312 26-60 (191)
17 PF00957 Synaptobrevin: Synapt 64.6 59 0.0013 27.4 8.9 13 233-245 35-47 (89)
18 PF12273 RCR: Chitin synthesis 61.8 4.9 0.00011 36.8 1.8 10 519-528 20-29 (130)
19 TIGR00383 corA magnesium Mg(2+ 61.4 66 0.0014 33.4 10.3 19 263-281 261-279 (318)
20 PF14979 TMEM52: Transmembrane 60.8 6.2 0.00013 37.2 2.3 35 101-140 15-49 (154)
21 KOG4026 Uncharacterized conser 59.5 74 0.0016 31.8 9.5 26 149-174 110-135 (207)
22 PF02439 Adeno_E3_CR2: Adenovi 57.5 9.6 0.00021 28.0 2.3 21 124-144 15-36 (38)
23 PF11169 DUF2956: Protein of u 54.4 12 0.00025 33.3 2.8 20 293-312 83-102 (103)
24 PF14235 DUF4337: Domain of un 52.9 2.1E+02 0.0046 27.3 15.1 22 228-249 79-100 (157)
25 PRK01919 tatB sec-independent 51.9 1.1E+02 0.0024 29.7 9.1 77 162-255 10-87 (169)
26 PF07344 Amastin: Amastin surf 49.7 1.3E+02 0.0029 28.2 9.4 35 283-322 91-125 (155)
27 PRK09546 zntB zinc transporter 48.0 1.2E+02 0.0025 31.9 9.7 20 262-284 266-285 (324)
28 PF06084 Cytomega_TRL10: Cytom 47.2 9.8 0.00021 34.5 1.2 29 499-527 58-86 (150)
29 COG4768 Uncharacterized protei 46.4 94 0.002 29.1 7.4 22 226-247 84-105 (139)
30 KOG0859 Synaptobrevin/VAMP-lik 44.9 60 0.0013 32.3 6.3 45 165-211 95-139 (217)
31 PF10854 DUF2649: Protein of u 44.1 35 0.00076 27.6 3.7 31 92-124 28-58 (67)
32 KOG2348 Urea transporter [Amin 42.6 28 0.00061 38.8 4.0 30 283-312 577-606 (667)
33 COG0598 CorA Mg2+ and Co2+ tra 42.6 1.1E+02 0.0023 32.3 8.4 11 275-285 274-284 (322)
34 PF11166 DUF2951: Protein of u 42.3 2.4E+02 0.0053 24.9 9.6 39 226-264 36-77 (98)
35 PF03904 DUF334: Domain of unk 42.1 3.9E+02 0.0085 27.2 13.0 14 264-277 155-168 (230)
36 PF10242 L_HGMIC_fpl: Lipoma H 41.9 1.2E+02 0.0025 29.5 7.8 59 45-109 18-78 (181)
37 PF14163 SieB: Superinfection 41.8 19 0.00041 33.7 2.3 28 492-520 28-55 (151)
38 PF03908 Sec20: Sec20; InterP 41.3 2.3E+02 0.0049 24.2 10.3 19 190-208 22-40 (92)
39 KOG3882 Tetraspanin family int 40.6 74 0.0016 31.6 6.5 42 259-300 52-93 (237)
40 PF05393 Hum_adeno_E3A: Human 40.0 16 0.00034 31.7 1.3 8 119-126 37-44 (94)
41 PF15099 PIRT: Phosphoinositid 40.0 19 0.00042 33.2 2.0 32 501-532 82-116 (129)
42 PF02038 ATP1G1_PLM_MAT8: ATP1 37.4 39 0.00085 26.3 3.0 30 102-135 11-40 (50)
43 PF10577 UPF0560: Uncharacteri 37.0 44 0.00096 39.5 4.7 15 477-491 644-658 (807)
44 PF03172 Sp100: Sp100 domain; 36.5 32 0.00068 30.7 2.7 58 456-513 15-72 (103)
45 PF05957 DUF883: Bacterial pro 36.3 2.7E+02 0.0059 23.7 9.6 37 225-261 38-74 (94)
46 PF06637 PV-1: PV-1 protein (P 35.6 5.6E+02 0.012 28.2 12.1 34 151-186 27-61 (442)
47 PF03348 Serinc: Serine incorp 35.6 1.1E+02 0.0024 33.8 7.4 77 92-172 125-204 (429)
48 TIGR03141 cytochro_ccmD heme e 35.2 48 0.001 24.9 3.1 34 496-530 4-37 (45)
49 PF15345 TMEM51: Transmembrane 34.6 19 0.00041 36.5 1.1 33 501-533 59-91 (233)
50 COG3162 Predicted membrane pro 33.6 2.7E+02 0.0059 24.8 7.9 27 289-315 60-86 (102)
51 PF11887 DUF3407: Protein of u 33.3 2.3E+02 0.0051 29.1 8.9 33 227-259 96-128 (267)
52 PTZ00443 Thioredoxin domain-co 33.0 67 0.0015 32.3 4.8 30 108-138 174-204 (224)
53 COG5336 Uncharacterized protei 32.8 3.8E+02 0.0083 24.4 9.4 50 249-299 36-87 (116)
54 PF04995 CcmD: Heme exporter p 32.4 60 0.0013 24.4 3.3 33 496-529 3-35 (46)
55 PTZ00201 amastin surface glyco 32.1 90 0.002 30.9 5.4 11 43-53 38-48 (192)
56 COG3850 NarQ Signal transducti 32.1 3.5E+02 0.0076 31.0 10.4 20 216-235 86-105 (574)
57 KOG3202 SNARE protein TLG1/Syn 31.6 2.8E+02 0.006 28.4 8.9 26 232-257 183-208 (235)
58 PF12729 4HB_MCP_1: Four helix 31.6 2.7E+02 0.0059 24.8 8.3 20 167-186 23-42 (181)
59 PRK11085 magnesium/nickel/coba 31.4 5.4E+02 0.012 27.3 11.4 22 70-91 93-116 (316)
60 PF10267 Tmemb_cc2: Predicted 31.0 4.2E+02 0.0092 29.2 10.7 12 293-304 378-389 (395)
61 KOG3462 Predicted membrane pro 30.5 1.1E+02 0.0023 27.0 4.8 30 275-307 38-67 (105)
62 KOG3882 Tetraspanin family int 30.4 87 0.0019 31.0 5.1 41 146-186 79-120 (237)
63 PF03623 Focal_AT: Focal adhes 30.4 2.5E+02 0.0054 26.5 7.7 52 194-246 36-89 (139)
64 PHA03189 UL14 tegument protein 30.1 64 0.0014 34.1 4.1 42 99-146 286-333 (348)
65 PF04341 DUF485: Protein of un 30.0 3E+02 0.0066 23.6 7.7 28 289-316 52-79 (91)
66 PF10873 DUF2668: Protein of u 29.9 29 0.00063 32.8 1.4 20 100-119 52-72 (155)
67 TIGR00996 Mtu_fam_mce virulenc 29.4 3E+02 0.0066 28.1 9.1 35 226-260 231-265 (291)
68 PF12732 YtxH: YtxH-like prote 29.1 2.4E+02 0.0053 23.0 6.7 40 161-203 7-46 (74)
69 COG2177 FtsX Cell division pro 28.5 6.6E+02 0.014 26.5 11.4 62 248-309 155-238 (297)
70 PRK10404 hypothetical protein; 28.5 4.2E+02 0.009 23.5 8.7 32 227-258 47-78 (101)
71 PF06837 Fijivirus_P9-2: Fijiv 28.5 4.8E+02 0.01 25.9 9.4 35 151-188 117-151 (214)
72 PF15330 SIT: SHP2-interacting 28.3 67 0.0015 28.8 3.4 32 502-533 2-33 (107)
73 PF14023 DUF4239: Protein of u 28.1 5.6E+02 0.012 24.8 10.8 14 314-327 192-205 (209)
74 PRK02935 hypothetical protein; 28.0 3.6E+02 0.0078 24.3 7.8 39 271-314 24-62 (110)
75 COG3771 Predicted membrane pro 27.2 2E+02 0.0044 25.1 5.9 27 283-312 39-65 (97)
76 PF11023 DUF2614: Protein of u 27.1 2.3E+02 0.0049 25.9 6.4 27 273-301 25-51 (114)
77 PHA00094 VI minor coat protein 27.1 2.1E+02 0.0045 26.0 6.2 46 322-368 64-109 (112)
78 PF05545 FixQ: Cbb3-type cytoc 26.8 1.2E+02 0.0026 22.9 4.1 17 504-520 14-30 (49)
79 PF07062 Clc-like: Clc-like; 26.8 3.3E+02 0.0072 27.4 8.4 56 261-316 105-162 (211)
80 PF05393 Hum_adeno_E3A: Human 25.6 68 0.0015 27.9 2.8 25 504-528 37-63 (94)
81 PF02203 TarH: Tar ligand bind 25.6 1.6E+02 0.0034 27.1 5.7 31 156-186 15-45 (171)
82 KOG0811 SNARE protein PEP12/VA 25.3 2.9E+02 0.0062 28.9 7.8 16 226-241 209-224 (269)
83 PF07344 Amastin: Amastin surf 25.1 5E+02 0.011 24.4 8.9 14 106-119 61-74 (155)
84 PHA00646 hypothetical protein 24.9 73 0.0016 25.8 2.7 29 93-123 27-55 (65)
85 PF12191 stn_TNFRSF12A: Tumour 24.2 26 0.00055 32.4 0.0 32 502-533 81-113 (129)
86 COG4768 Uncharacterized protei 24.0 5E+02 0.011 24.4 8.3 19 177-195 25-43 (139)
87 PF15050 SCIMP: SCIMP protein 23.9 94 0.002 28.6 3.5 29 499-527 9-37 (133)
88 PF13994 PgaD: PgaD-like prote 23.6 80 0.0017 29.2 3.2 27 507-533 70-96 (138)
89 PRK11677 hypothetical protein; 23.4 4.2E+02 0.0092 24.7 7.8 21 156-176 7-27 (134)
90 PF10233 Cg6151-P: Uncharacter 22.8 3.1E+02 0.0067 24.9 6.6 27 111-137 22-51 (113)
91 PF01102 Glycophorin_A: Glycop 22.8 60 0.0013 29.9 2.1 16 20-35 6-21 (122)
92 PF15050 SCIMP: SCIMP protein 22.7 90 0.002 28.7 3.2 15 121-135 19-33 (133)
93 PF13903 Claudin_2: PMP-22/EMP 22.6 4E+02 0.0086 24.2 7.7 7 133-139 91-97 (172)
94 PF10812 DUF2561: Protein of u 22.5 2.6E+02 0.0057 27.9 6.5 78 90-172 8-85 (207)
95 KOG3827 Inward rectifier K+ ch 22.0 1.4E+02 0.0031 32.6 5.0 36 283-322 60-96 (400)
96 KOG4117 Heat shock factor bind 21.9 1.3E+02 0.0029 24.7 3.6 32 224-255 22-53 (73)
97 PF03229 Alpha_GJ: Alphavirus 21.7 81 0.0018 28.8 2.7 25 111-136 87-111 (126)
98 PRK04654 sec-independent trans 21.6 7.2E+02 0.016 25.1 9.4 35 163-198 11-45 (214)
99 PRK11677 hypothetical protein; 21.6 5.9E+02 0.013 23.8 8.4 25 157-181 4-28 (134)
100 PF10160 Tmemb_40: Predicted m 21.4 2.6E+02 0.0057 29.0 6.6 39 136-175 180-218 (261)
101 COG4987 CydC ABC-type transpor 21.2 1.3E+03 0.028 26.7 14.3 55 276-330 149-214 (573)
102 KOG2196 Nuclear porin [Nuclear 21.1 4.8E+02 0.01 26.9 8.2 73 178-259 173-245 (254)
103 PF05454 DAG1: Dystroglycan (D 20.9 33 0.00071 36.1 0.0 9 127-135 163-171 (290)
104 PHA02898 virion envelope prote 20.5 3.5E+02 0.0075 23.7 6.0 13 154-166 49-61 (92)
105 PF07662 Nucleos_tra2_C: Na+ d 20.5 7.4E+02 0.016 24.9 9.4 54 253-306 49-108 (210)
106 KOG4050 Glutamate transporter 20.3 2.1E+02 0.0046 27.7 5.2 99 71-171 25-139 (188)
107 PF02480 Herpes_gE: Alphaherpe 20.2 34 0.00074 37.9 0.0 43 489-531 344-386 (439)
No 1
>cd07912 Tweety_N N-terminal domain of the protein encoded by the Drosophila tweety gene and related proteins, a family of chloride ion channels. The protein product of the Drosophila tweety (tty) gene is thought to form a trans-membrane protein with five membrane-spanning regions and a cytoplasmic C-terminus. This N-terminal domain contains the putative transmembrane spanning regions. Tweety has been suggested as a candidate for a large conductance chloride channel, both in vertebrate and insect cells. Three human homologs have been identified and designated TTYH1-3. TTYH2 has been associated with the progression of cancer, and Drosophila melanogaster tweety has been assumed to play a role in development. TTYH2, and TTYH3 bind to and are ubiquinated by Nedd4-2, a HECT type E3 ubiquitin ligase, which most likely plays a role in controlling the cellular levels of tweety family proteins.
Probab=100.00 E-value=2.7e-41 Score=359.33 Aligned_cols=361 Identities=18% Similarity=0.234 Sum_probs=247.2
Q ss_pred CcccccCCccCCChhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhcccCCC---CCCCCchhHHHHHHHHHHHHHH
Q 008879 86 GFKRYSGGWNIKDRHYWASVAYTAAPLFVIAAIWFLGFGACLLFICIFHFCCKRK---PYGYSKTAYALSLIFLIFFTIA 162 (550)
Q Consensus 86 ~fk~Y~ggfni~n~hYwaSv~ftg~pg~iIAalwfi~fgl~lli~~~c~CCc~rk---~~~ysr~~~~~slillll~ti~ 162 (550)
.|++.+++|||+|+||||||+|+|+ +|++||+++|+++++|++|+|||||+ +++|+.+|+.|+++++.++++
T Consensus 20 ~f~~v~~~F~p~~~~Y~~Sv~~~a~----iaavwlil~ll~ll~~~~~~CCcr~~~~~~k~~s~~c~~~sLiiltL~~~- 94 (418)
T cd07912 20 TFHRVNSTFNPEDEIYQQSLLILAS----IPAACLILSLLFLLVYLITRCCDRKPTEERPRHSICCLKWSLVIATLLCC- 94 (418)
T ss_pred eEEecCCCCCCCCHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCccHHHHHHHHHHHHHH-
Confidence 4678899999999999999999997 89999999999999999999999997 788888999999887777777
Q ss_pred HHHHHhhhhccchhhccchhhhHHHHHhchHHHHHHHHHHHHHHHhhhhccccc-------cccCCCccccHHHHHHHHH
Q 008879 163 AIIGCVVLYAGQVKFRGSTKKTLEYVVYQADTTVQKLQEVSNNLATAKQISVQK-------VFLPSNVQSDIDNVESKLN 235 (550)
Q Consensus 163 aIaG~ivl~~Gn~~fh~~~~~tl~yvv~~an~tv~~l~nVt~~l~~~k~~~v~~-------~~lP~d~~~~id~~~~~Ln 235 (550)
+|.+++|+||+++|++++++.+++ +++|+++++++|+++++++.-+.++++ .+-....+++..++.++++
T Consensus 95 --aaIi~~f~GN~~~h~gV~~t~~si-~~an~tv~~l~nqv~~l~~al~~t~~~~L~~L~~il~~~~~~~~~~~~~~~~q 171 (418)
T cd07912 95 --AAIGVGLYGNDETHDGVVQLTYSL-RNANHTVAGIDNQTSDTEASLNVTVEPQLTNLEDIFDARVNKTDYLQIVQGLQ 171 (418)
T ss_pred --HHHHHHhhccHHHhhhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhhhhhHhHHHHHhCCCcchhhHHHHHHHHH
Confidence 555669999999999999999998 899999999999988888764333431 1111112356677778888
Q ss_pred hhHHHHHHHhhh---------hhHHHH---HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 008879 236 SSASTVADETAK---------NSHDIR---DLLDSVRL----ALILIAAIMLVLTFLGFLFSIFGMQVLVYVLVIFGWIL 299 (550)
Q Consensus 236 s~a~~i~~k~~~---------n~~~I~---k~l~~v~l----~l~iva~vmllL~llglv~si~g~r~lv~~lvilgwil 299 (550)
++++++.+.+.+ |...|. +..+.+|+ +++++..+.++++++|++ .+.||.+++++++|++.
T Consensus 172 ~~~~n~~~~~~~~~~~~~~~~~l~~i~~~~~~~E~~Rw~~~l~lL~~~lviC~~~l~gl~---r~Sr~~li~~s~~g~l~ 248 (418)
T cd07912 172 QMATNAAQQLTGIPFWSLVGVSLTKLADQVSLYESYRWLAYLGLLSLLLVICLVLLVGLA---RHSRCLLIVFSVCGLFA 248 (418)
T ss_pred HHHHHHHHHHhccccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhcchHHHHHHHHHHHH
Confidence 888887755432 233333 23334553 444444444444444443 68899999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcchhhhchhhhhhCCCCCCCCccccccCCcchhhHHHhhhHhhhhHHHHHHHHHhhhhcccCC
Q 008879 300 VTGTFILCGIFLLLHNVAGDTCVAMNEYVQNPAAHTALDSIIPCVDKATAQDTLTRTKEVTSQLVEVVNEVITNVSNINF 379 (550)
Q Consensus 300 v~~tWil~G~fl~l~~~vsDtCvAmdeyv~nP~~~T~L~~iLPC~d~~ta~~~l~~skev~~~lv~~vN~vis~~sn~~~ 379 (550)
++++|++.|+|++.+++++|+|++||+|+.+.+...-..| ++
T Consensus 249 l~~~W~~~~~~l~~~v~~sDfC~~pd~yi~~~~~~~~~~d--------------------------i~------------ 290 (418)
T cd07912 249 LIISWLSLGLYLASAVALSDFCVDPDDYVRNQTPSGLSSD--------------------------IL------------ 290 (418)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhcCHHHHHHhccccccchH--------------------------HH------------
Confidence 9999999999999999999999999999998863210000 00
Q ss_pred CCCCCcccccCCCCCCccccCCCCCCCCCCCCCCCcccccchhhhhccceeccCCCCcccCCCccChhHHHHHHHHHHHH
Q 008879 380 APAFVPFYFNQSGPLVPILCNPFHPDFTDRTCTAGELNLNNATQALSNYVCQVSPSGVCTTTGRLTPPLYDDMTAAVNLC 459 (550)
Q Consensus 380 ~~~~~~~y~nqsgp~~p~lCnPf~~~~~~~~C~~g~v~~~~~~~v~~~~~C~~~~~~~C~t~gr~tp~~y~q~~a~~n~s 459 (550)
-||.+..|..+ |||...++.. ...+.+..+.++...=.. -..+.+.+ +....++.--|.+
T Consensus 291 ------~yy~~C~~~~~---npF~~~l~~~-----~~~l~~~~~~~~~~~~~~--~~~~~~~~----~~l~~~~~~ln~~ 350 (418)
T cd07912 291 ------QYYLTCEPSTT---NPFQQRLTES-----QRALTNMQSQVQGLLREA--VFEFPTAE----DNLLSLQGDLNST 350 (418)
T ss_pred ------HHHhcCCCCCC---CcchHhhHHH-----HHHHHHHHHHHHHHHHHh--cccCCccc----chHHHHHHHHHHH
Confidence 14444443332 5665444321 112222222111111000 00111110 1123344444554
Q ss_pred HhhhhhccccccCCCchhHHHHHHHhcccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008879 460 NGLENYGPFLAELQDCTFVRETFNEIYRDHCPDLQAYSKWIYVGLAMVSTAVMLSLIFWVI 520 (550)
Q Consensus 460 ~~L~~~~P~l~~L~dC~fVrdtF~~I~~~~C~~L~~~~~~v~~gl~~lS~~~~l~~i~Wv~ 520 (550)
... .-.|..++||.-+.+-+.+-...-|-+--.++-. ..+..+-+|.+++++.|+.
T Consensus 351 e~~---l~~l~a~ldCr~~h~~Y~~a~~g~C~~gl~Gl~~--~~l~s~~~a~~~~~lv~~~ 406 (418)
T cd07912 351 EIN---LHQLTALLDCRGLHKDYVEALRGLCYDGLEGLLY--LLLFSLLAALLFTILVCVD 406 (418)
T ss_pred HHH---HHHHHhhcchHHHHHHHHHHHHccccchHHHHHH--HHHHHHHHHHHHHHHHHhc
Confidence 433 4457789999999999999999999876665443 3444455677777777654
No 2
>PF04906 Tweety: Tweety; InterPro: IPR006990 None of the members of the tweety (tty) family have been functionally characterised. However, they are considered to be transmembrane proteins with five potential membrane-spanning regions. A number of potential functions have been suggested on the basis of homology to the yeast FTR1 and FTH1 iron transporter proteins and the mammalian neurotensin receptors 1 and 2 in that they have a similar hydrophobicity profiles although there is no detectable sequence homology to the tweety-related proteins. It has been proposed that the tweety-related proteins could be involved in transport of iron or other divalent cations or alternatively that they may be membrane-bound receptors [].
Probab=100.00 E-value=5.5e-35 Score=312.46 Aligned_cols=361 Identities=19% Similarity=0.267 Sum_probs=239.4
Q ss_pred cccccCCccCCChhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCc---hhHHHHHHHHHHHHHHH
Q 008879 87 FKRYSGGWNIKDRHYWASVAYTAAPLFVIAAIWFLGFGACLLFICIFHFCCKRKPYGYSK---TAYALSLIFLIFFTIAA 163 (550)
Q Consensus 87 fk~Y~ggfni~n~hYwaSv~ftg~pg~iIAalwfi~fgl~lli~~~c~CCc~rk~~~ysr---~~~~~slillll~ti~a 163 (550)
|+..+++|+|+|+.|+||+++.|. ++++|+++.++++++|++|+|||||++++.++ +|..|+++++.++++
T Consensus 1 ~~~~~~~F~p~~~~Y~qsL~~la~----v~~~~l~l~Ll~ll~yl~~~CC~r~~~~~~~~~~~~c~~~~~~ia~lvc~-- 74 (406)
T PF04906_consen 1 FQPVSSTFNPQDEEYQQSLLILAS----VAAACLALSLLFLLIYLICRCCCRRPREEKSSRRCCCLTWSLVIATLVCC-- 74 (406)
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhhCCCCCccccccCCcchHHHHHHHHHHHH--
Confidence 678899999999999999999996 89999988899999999999999997665544 388899765555555
Q ss_pred HHHHhhhhccchhhccchhhhHHHHHhchHHHHHHHHH-HHHHHHhhhhcccccccc----CCCccccHHHHHHHHHhhH
Q 008879 164 IIGCVVLYAGQVKFRGSTKKTLEYVVYQADTTVQKLQE-VSNNLATAKQISVQKVFL----PSNVQSDIDNVESKLNSSA 238 (550)
Q Consensus 164 IaG~ivl~~Gn~~fh~~~~~tl~yvv~~an~tv~~l~n-Vt~~l~~~k~~~v~~~~l----P~d~~~~id~~~~~Lns~a 238 (550)
+|.++|||||+++|+++.+ +.|..+++|+++.++++ ++++.+.++. .+++++. -.+.++++.++.++++..+
T Consensus 75 -aaigvG~yGN~e~~~gv~~-~~~s~~~~n~t~~~i~~~v~~~~~~l~~-~v~~~l~~Le~~~~~~~~~~~~~~~~~~~~ 151 (406)
T PF04906_consen 75 -AAIGVGFYGNSETNDGVYQ-LIYSLRNANHTLSGIDNLVSDTTEALNS-TVEQHLTRLEEIFAKRTDLLQALQFLQQQA 151 (406)
T ss_pred -HHHHcccccchhhhccHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcccccHHHHHHHHHHHH
Confidence 7778999999999999999 67789999999999999 5665555552 2322211 1123455677777777777
Q ss_pred HHHHHHhhh---------hhHHHHH---HHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 008879 239 STVADETAK---------NSHDIRD---LLDSVRLALIL-IAAIMLVLTFLGFLFSIFGMQVLVYVLVIFGWILVTGTFI 305 (550)
Q Consensus 239 ~~i~~k~~~---------n~~~I~k---~l~~v~l~l~i-va~vmllL~llglv~si~g~r~lv~~lvilgwilv~~tWi 305 (550)
+++..++.+ +...+.+ ..+..||..++ +..+++++++++++....+.||.++.+.++|++.++++|+
T Consensus 152 ~~v~~~l~~l~~~~~~~~~l~~~~~~~~~~E~yRw~~~~~lL~l~l~icl~~l~glar~Sk~~li~~~v~gll~lvisW~ 231 (406)
T PF04906_consen 152 ENVVQQLDELPFWRNVSLSLEQLAEQVSFYEYYRWLAYLGLLILDLVICLLGLLGLARQSKCLLIVFSVLGLLALVISWI 231 (406)
T ss_pred HHHHHHHhcCcccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcceEEEeeeccHHHHHHHHH
Confidence 777666543 2222222 22334554332 2233444444444434478899999999999999999999
Q ss_pred HHHHHHHHHhhcchhhhchhhhhhCCCCCCCCccccccCCcchhhHHHhhhHhhhhHHHHHHHHHhhhhcccCCCCCCCc
Q 008879 306 LCGIFLLLHNVAGDTCVAMNEYVQNPAAHTALDSIIPCVDKATAQDTLTRTKEVTSQLVEVVNEVITNVSNINFAPAFVP 385 (550)
Q Consensus 306 l~G~fl~l~~~vsDtCvAmdeyv~nP~~~T~L~~iLPC~d~~ta~~~l~~skev~~~lv~~vN~vis~~sn~~~~~~~~~ 385 (550)
+.|++++++++++|+|++||+|+.|-+.+.... ++++
T Consensus 232 ~~g~~la~aV~~SDFC~~Pd~~i~~~~~~~~~~--------------------------di~~----------------- 268 (406)
T PF04906_consen 232 SLGLELAAAVGLSDFCVDPDTYILNQTQNETSA--------------------------DILQ----------------- 268 (406)
T ss_pred HHHHHHHhccchhhhccCHHHHHHHhcccccch--------------------------hHHH-----------------
Confidence 999999999999999999999999887554210 0111
Q ss_pred ccccCCCCCCccccCCCCCCCCCCCCCCCcccccchhhhhccceeccCCCCcccCCCccChhHHHHHHHHHHHHHhhhhh
Q 008879 386 FYFNQSGPLVPILCNPFHPDFTDRTCTAGELNLNNATQALSNYVCQVSPSGVCTTTGRLTPPLYDDMTAAVNLCNGLENY 465 (550)
Q Consensus 386 ~y~nqsgp~~p~lCnPf~~~~~~~~C~~g~v~~~~~~~v~~~~~C~~~~~~~C~t~gr~tp~~y~q~~a~~n~s~~L~~~ 465 (550)
||...+|..+ |||...++.-+ -.+.++...+....-... ...-+.+ ....+++..-|.+. ..
T Consensus 269 -YYl~C~~~~~---nPFqq~l~~~~-----~al~~~q~~~~~L~~~a~--~~fp~~~----~~l~~i~~~Ln~~e---~~ 330 (406)
T PF04906_consen 269 -YYLTCSQSVS---NPFQQRLTSSQ-----RALSNMQSQVQGLLREAV--PLFPTAQ----EPLLAIQEDLNSTE---RS 330 (406)
T ss_pred -HhhcCCCCCC---CchHHHHHHHH-----HHHHHHHHHHHHHHHHHH--hhCCCcc----chHHHHHHHHHHHH---HH
Confidence 4444444333 55544332110 012222222222221000 0000000 12233444444443 34
Q ss_pred ccccccCCCchhHHHHHHHhcccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008879 466 GPFLAELQDCTFVRETFNEIYRDHCPDLQAYSKWIYVGLAMVSTAVMLSLIFWV 519 (550)
Q Consensus 466 ~P~l~~L~dC~fVrdtF~~I~~~~C~~L~~~~~~v~~gl~~lS~~~~l~~i~Wv 519 (550)
...+..++||.-+.+.|.+....-|.+--.++-.++..- +-++.++++++|+
T Consensus 331 l~~l~alldCr~lh~dY~~al~g~C~dg~eGl~~l~l~s--ll~al~f~~~v~~ 382 (406)
T PF04906_consen 331 LHQLTALLDCRGLHKDYVDALRGLCYDGLEGLLYLLLFS--LLAALLFSILVCV 382 (406)
T ss_pred HHHHHhhcccccHHHHHHHHHHhhccchHhHHHHHHHHH--HHHHHHHHHHHHH
Confidence 455788999999999999999999999999887777533 3444555555554
No 3
>KOG4433 consensus Tweety transmembrane/cell surface protein [General function prediction only]
Probab=99.97 E-value=5.7e-29 Score=261.66 Aligned_cols=240 Identities=17% Similarity=0.257 Sum_probs=180.9
Q ss_pred CcccccCCccCCChhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhcccCCCCC---CCCchhHHHHHHHHHHHHHH
Q 008879 86 GFKRYSGGWNIKDRHYWASVAYTAAPLFVIAAIWFLGFGACLLFICIFHFCCKRKPY---GYSKTAYALSLIFLIFFTIA 162 (550)
Q Consensus 86 ~fk~Y~ggfni~n~hYwaSv~ftg~pg~iIAalwfi~fgl~lli~~~c~CCc~rk~~---~ysr~~~~~slillll~ti~ 162 (550)
.|+.-++.|+++|+.|+||+++.|. +|++++++.++++++|.+|+|||||+.. ...-+|..|++++..++|+
T Consensus 24 ~~~~tns~F~pe~~~Y~QaL~lla~----l~aa~l~l~Ll~ll~yli~~cC~Rr~~~~~~~~~~~c~s~~l~I~tl~cc- 98 (526)
T KOG4433|consen 24 KLHPTNSVFRPEDSEYQQALLLLAA----LAAACLGLSLLFLLFYLICRCCCRRETTGRKRRRVRCLSWSLIIATLMCC- 98 (526)
T ss_pred eEeeccccCCCCcHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHcCCCccCCCCCCcceeeehHHHHHHHHH-
Confidence 3456789999999999999999996 8888888889999999999999999733 3334789999766555555
Q ss_pred HHHHHhhhhccchhhccchhhhHHHHHhchHHHHHHHHH-HHHHHHhhhhcccccccc-CC---CccccHHHHHHHHHhh
Q 008879 163 AIIGCVVLYAGQVKFRGSTKKTLEYVVYQADTTVQKLQE-VSNNLATAKQISVQKVFL-PS---NVQSDIDNVESKLNSS 237 (550)
Q Consensus 163 aIaG~ivl~~Gn~~fh~~~~~tl~yvv~~an~tv~~l~n-Vt~~l~~~k~~~v~~~~l-P~---d~~~~id~~~~~Lns~ 237 (550)
+|++++||||+++|+++.+ ..|..+++|+++.++++ |+++-+.+++ .+++... |. ....++.++.+.++..
T Consensus 99 --a~igvg~ygN~e~~~G~~q-~~~Sl~~an~tv~ti~~qv~~~~~~l~~-~~~~~l~~~~~n~t~~~~l~~~l~~vq~~ 174 (526)
T KOG4433|consen 99 --AAIGVGFYGNSETSDGLLQ-ATYSLRHANHTVSTIDAQVSDTAEGLNN-TAEQLLETLEENLTARPELLQALRRVQGN 174 (526)
T ss_pred --HHHheeeecCccccchHHH-HHHhhhhhcchhhHHHHHHHHHHHHHHH-HHHHHhhhHHhhhhhHHHHHHHHHHHHHH
Confidence 8889999999999999999 67789999999999999 5666666654 2332222 22 2445577777777777
Q ss_pred HHHHHHHhhh---------hhHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHHHHHHHH
Q 008879 238 ASTVADETAK---------NSHDIRDLL---DSVRLALILIAAIMLVLTFLGFLFSI-FGMQVLVYVLVIFGWILVTGTF 304 (550)
Q Consensus 238 a~~i~~k~~~---------n~~~I~k~l---~~v~l~l~iva~vmllL~llglv~si-~g~r~lv~~lvilgwilv~~tW 304 (550)
++.+..+.+. ...++.+.. +.+||..+++...++++.++.+++++ .+.||+++.|.++|.+.++++|
T Consensus 175 ~~~a~~~l~~~~~~~~~~~sl~~l~~~~~~yE~~RW~~~v~lL~l~LvvC~v~vlglak~Skc~li~fsv~Gll~lvisW 254 (526)
T KOG4433|consen 175 AETAVGQLSGLPFWRMVAVSLEKLAEQVDFYESYRWLAYVLLLTLLLVVCLVLVLGLAKRSKCLLIVFSVCGLLALVISW 254 (526)
T ss_pred HHHHHHhhhcCcccccCcccHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHH
Confidence 7766655432 123333332 33566554443333333333333343 5789999999999999999999
Q ss_pred HHHHHHHHHHhhcchhhhchhhhhhCCCCC
Q 008879 305 ILCGIFLLLHNVAGDTCVAMNEYVQNPAAH 334 (550)
Q Consensus 305 il~G~fl~l~~~vsDtCvAmdeyv~nP~~~ 334 (550)
.+.|++++.+++++|||+++|+|+.|...+
T Consensus 255 l~~gl~la~sVa~sDFC~~Pd~y~~~~~~~ 284 (526)
T KOG4433|consen 255 LSLGLELASSVALSDFCVDPDDYVLNMVEE 284 (526)
T ss_pred HHHhhhHHHHhhhhhhccChHHHHHHhhhc
Confidence 999999999999999999999999987654
No 4
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=98.79 E-value=2.6e-06 Score=99.54 Aligned_cols=49 Identities=12% Similarity=0.264 Sum_probs=36.4
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHhhhhccchhhccchhhhHHHHHhchHHH
Q 008879 144 YSKTAYALSLIFLIFFTIAAIIGCVVLYAGQVKFRGSTKKTLEYVVYQADTT 195 (550)
Q Consensus 144 ysr~~~~~slillll~ti~aIaG~ivl~~Gn~~fh~~~~~tl~yvv~~an~t 195 (550)
|.|.++.+. |++++++.++|.+++|++|+.++++++++.+.+-+..+|+
T Consensus 137 c~R~~l~~~---L~~~~~~il~g~i~aF~~n~~l~~~v~~~~~~~~~~~~Dl 185 (806)
T PF05478_consen 137 CRRGCLGIL---LLLLTLIILFGVICAFVANQQLSTGVDDTPNTVNSTLDDL 185 (806)
T ss_pred cchHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 445555554 5677777789999999999999999998777655554444
No 5
>KOG4331 consensus Polytopic membrane protein Prominin [General function prediction only]
Probab=97.37 E-value=0.0022 Score=73.55 Aligned_cols=65 Identities=15% Similarity=0.157 Sum_probs=45.8
Q ss_pred ccccccCCCchhHHHHHHHhcccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhh
Q 008879 466 GPFLAELQDCTFVRETFNEIYRDHCPDLQAYSKWIYVGLAMVSTAVMLSLIFWVIYGRERRYRIY 530 (550)
Q Consensus 466 ~P~l~~L~dC~fVrdtF~~I~~~~C~~L~~~~~~v~~gl~~lS~~~~l~~i~Wv~~~r~~~~r~~ 530 (550)
-|..|++.+|+=+..+..+-+.--|.=...-.+--|.|++...+-+..++|+-+.-...-||+.-
T Consensus 757 ~e~~e~V~sCqPls~~l~~~~~~lC~~~iDPlN~fW~~il~c~~lliP~li~a~~l~~~y~rm~~ 821 (865)
T KOG4331|consen 757 KEHLENVASCQPLSKILRENVVVLCGYIIDPLNLFWFCILFCTVLLIPSLIFAVKLPKLYRRMEN 821 (865)
T ss_pred HHHHhhccccccHHHHHHhhhHhhhhhccCCccccchHHHHHHHHHHhHHHHHHHhhHhhhhhcc
Confidence 45566777776666666665555666666666778999999999999999987665555554433
No 6
>cd07912 Tweety_N N-terminal domain of the protein encoded by the Drosophila tweety gene and related proteins, a family of chloride ion channels. The protein product of the Drosophila tweety (tty) gene is thought to form a trans-membrane protein with five membrane-spanning regions and a cytoplasmic C-terminus. This N-terminal domain contains the putative transmembrane spanning regions. Tweety has been suggested as a candidate for a large conductance chloride channel, both in vertebrate and insect cells. Three human homologs have been identified and designated TTYH1-3. TTYH2 has been associated with the progression of cancer, and Drosophila melanogaster tweety has been assumed to play a role in development. TTYH2, and TTYH3 bind to and are ubiquinated by Nedd4-2, a HECT type E3 ubiquitin ligase, which most likely plays a role in controlling the cellular levels of tweety family proteins.
Probab=96.86 E-value=0.14 Score=55.97 Aligned_cols=10 Identities=30% Similarity=0.853 Sum_probs=4.2
Q ss_pred hchhhhhhCC
Q 008879 322 VAMNEYVQNP 331 (550)
Q Consensus 322 vAmdeyv~nP 331 (550)
++..||+-+|
T Consensus 264 v~~sDfC~~p 273 (418)
T cd07912 264 VALSDFCVDP 273 (418)
T ss_pred HhhhhhhcCH
Confidence 4444444433
No 7
>PF04906 Tweety: Tweety; InterPro: IPR006990 None of the members of the tweety (tty) family have been functionally characterised. However, they are considered to be transmembrane proteins with five potential membrane-spanning regions. A number of potential functions have been suggested on the basis of homology to the yeast FTR1 and FTH1 iron transporter proteins and the mammalian neurotensin receptors 1 and 2 in that they have a similar hydrophobicity profiles although there is no detectable sequence homology to the tweety-related proteins. It has been proposed that the tweety-related proteins could be involved in transport of iron or other divalent cations or alternatively that they may be membrane-bound receptors [].
Probab=95.03 E-value=0.72 Score=50.33 Aligned_cols=177 Identities=13% Similarity=0.111 Sum_probs=96.7
Q ss_pred HHHHHHHHHHHHhcccCC-CCCC---CCchhHHHHHHHHHHHHHHHHHHHhhhhccchhhccchh---hhHHHHHhchHH
Q 008879 122 GFGACLLFICIFHFCCKR-KPYG---YSKTAYALSLIFLIFFTIAAIIGCVVLYAGQVKFRGSTK---KTLEYVVYQADT 194 (550)
Q Consensus 122 ~fgl~lli~~~c~CCc~r-k~~~---ysr~~~~~slillll~ti~aIaG~ivl~~Gn~~fh~~~~---~tl~yvv~~an~ 194 (550)
++.++.++..||++..++ +++. +.+.+..+..++......+.+-|..=.-.|-.++..++. +++.-+-++.++
T Consensus 35 l~ll~yl~~~CC~r~~~~~~~~~~~~c~~~~~~ia~lvc~aaigvG~yGN~e~~~gv~~~~~s~~~~n~t~~~i~~~v~~ 114 (406)
T PF04906_consen 35 LFLLIYLICRCCCRRPREEKSSRRCCCLTWSLVIATLVCCAAIGVGFYGNSETNDGVYQLIYSLRNANHTLSGIDNLVSD 114 (406)
T ss_pred HHHHHHHHHHhhCCCCCccccccCCcchHHHHHHHHHHHHHHHHcccccchhhhccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566665556555544 3322 555555554444444444455555555666666655444 444445566666
Q ss_pred HHHHHHH-HHHHHHhhhhccccccccCCCccccHHHHHHHHHh---hHHHHH---------HHhhhhhHHHHHHHHHHHH
Q 008879 195 TVQKLQE-VSNNLATAKQISVQKVFLPSNVQSDIDNVESKLNS---SASTVA---------DETAKNSHDIRDLLDSVRL 261 (550)
Q Consensus 195 tv~~l~n-Vt~~l~~~k~~~v~~~~lP~d~~~~id~~~~~Lns---~a~~i~---------~k~~~n~~~I~k~l~~v~l 261 (550)
+.+++.. +...++..+++ +..|.|....+.++++.+++ ++++|. +++.+..+.++.+....++
T Consensus 115 ~~~~l~~~v~~~l~~Le~~----~~~~~~~~~~~~~~~~~~~~v~~~l~~l~~~~~~~~~l~~~~~~~~~~E~yRw~~~~ 190 (406)
T PF04906_consen 115 TTEALNSTVEQHLTRLEEI----FAKRTDLLQALQFLQQQAENVVQQLDELPFWRNVSLSLEQLAEQVSFYEYYRWLAYL 190 (406)
T ss_pred HHHHHHHHHHHHHHHHHHH----hcccccHHHHHHHHHHHHHHHHHHHhcCcccccCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 6666654 55555555432 23344433333333332222 222221 2344556677777777889
Q ss_pred HHHHHHHHHHHHHHHHHHHHH----hhhhHHHHHHHHHHHHHHHH
Q 008879 262 ALILIAAIMLVLTFLGFLFSI----FGMQVLVYVLVIFGWILVTG 302 (550)
Q Consensus 262 ~l~iva~vmllL~llglv~si----~g~r~lv~~lvilgwilv~~ 302 (550)
.++++..+.+++.++|++--. ...-.+-.+.+++.|++..+
T Consensus 191 ~lL~l~l~icl~~l~glar~Sk~~li~~~v~gll~lvisW~~~g~ 235 (406)
T PF04906_consen 191 GLLILDLVICLLGLLGLARQSKCLLIVFSVLGLLALVISWISLGL 235 (406)
T ss_pred HHHHHHHHHHHHHHHHHHhcCcceEEEeeeccHHHHHHHHHHHHH
Confidence 998999999999999976522 12223334566678887644
No 8
>KOG4433 consensus Tweety transmembrane/cell surface protein [General function prediction only]
Probab=95.01 E-value=1.2 Score=49.19 Aligned_cols=49 Identities=27% Similarity=0.351 Sum_probs=32.7
Q ss_pred ccccCCCchhHHHHHHHhcccCCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008879 468 FLAELQDCTFVRETFNEIYRDHCPDLQAYSKWIYVGLAMVSTAVMLSLIFW 518 (550)
Q Consensus 468 ~l~~L~dC~fVrdtF~~I~~~~C~~L~~~~~~v~~gl~~lS~~~~l~~i~W 518 (550)
.|..+.||--+.+-|.+--.+-|-+=-.+. ++..++.+=.|+++++++|
T Consensus 357 qLtAlvdCr~lH~dy~~AlrGlC~~gl~GL--~~lml~s~L~a~~lsilv~ 405 (526)
T KOG4433|consen 357 QLTALVDCRSLHKDYVAALRGLCYDGLEGL--LYLMLFSFLTALALSILVC 405 (526)
T ss_pred HHHHhhhhhHHHHHHHHHHHHhhhhhHHHH--HHHHHHHHHHHHHHHHHHh
Confidence 356789999999999999889997654443 3333333344556666653
No 9
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=92.95 E-value=2 Score=50.99 Aligned_cols=53 Identities=15% Similarity=0.278 Sum_probs=42.2
Q ss_pred ccCCCchhHHHHHHHhcccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 008879 470 AELQDCTFVRETFNEIYRDHCPDLQAYSKWIYVGLAMVSTAVMLSLIFWVIYG 522 (550)
Q Consensus 470 ~~L~dC~fVrdtF~~I~~~~C~~L~~~~~~v~~gl~~lS~~~~l~~i~Wv~~~ 522 (550)
++...|.=+.+++...+.--|.-+-..++-.|.|++.-+.-+++++||-+.-+
T Consensus 740 ~~vg~C~Pl~~~~d~~~~~~C~~ivdp~N~fWf~l~~c~~~liP~ii~avkL~ 792 (806)
T PF05478_consen 740 NDVGRCQPLANIYDSAVVILCSRIVDPINGFWFGLGWCTLFLIPSIIFAVKLA 792 (806)
T ss_pred ccCcCCccHHHHHHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666888888888888778888888899999999998888888888755433
No 10
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=83.45 E-value=3.8 Score=34.79 Aligned_cols=18 Identities=11% Similarity=0.320 Sum_probs=8.8
Q ss_pred HHHHHHHHHhhHHHHHHH
Q 008879 227 IDNVESKLNSSASTVADE 244 (550)
Q Consensus 227 id~~~~~Lns~a~~i~~k 244 (550)
|+.-.++|...|....++
T Consensus 36 L~~kt~~L~~~a~~F~k~ 53 (89)
T PF00957_consen 36 LEDKTEELSDNAKQFKKN 53 (89)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHH
Confidence 333345555555554444
No 11
>KOG0860 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=78.38 E-value=21 Score=32.46 Aligned_cols=33 Identities=21% Similarity=0.342 Sum_probs=19.9
Q ss_pred cccccccCCCccccHHHHHHHHHhhHHHHHHHh
Q 008879 213 SVQKVFLPSNVQSDIDNVESKLNSSASTVADET 245 (550)
Q Consensus 213 ~v~~~~lP~d~~~~id~~~~~Lns~a~~i~~k~ 245 (550)
+|++++...+-.+.|+.-.++|+.+|....+.+
T Consensus 48 NV~KVlER~ekL~~L~drad~L~~~as~F~~~A 80 (116)
T KOG0860|consen 48 NVEKVLERGEKLDELDDRADQLQAGASQFEKTA 80 (116)
T ss_pred hHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444334556666778888887776663
No 12
>PF13908 Shisa: Wnt and FGF inhibitory regulator
Probab=76.63 E-value=1.3 Score=42.75 Aligned_cols=22 Identities=18% Similarity=0.199 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHHhccc
Q 008879 116 AAIWFLGFGACLLFICIFHFCC 137 (550)
Q Consensus 116 Aalwfi~fgl~lli~~~c~CCc 137 (550)
+++.|+++.+++++.++|.|||
T Consensus 83 gvi~~Vi~Iv~~Iv~~~Cc~c~ 104 (179)
T PF13908_consen 83 GVICGVIAIVVLIVCFCCCCCC 104 (179)
T ss_pred ehhhHHHHHHHhHhhheecccc
Confidence 3444333333333333343344
No 13
>PF06749 DUF1218: Protein of unknown function (DUF1218); InterPro: IPR009606 This family contains hypothetical plant proteins of unknown function. Family members contain a number of conserved cysteine residues.
Probab=74.64 E-value=7.5 Score=33.96 Aligned_cols=14 Identities=36% Similarity=0.370 Sum_probs=7.7
Q ss_pred HHHHHhhhhccchh
Q 008879 163 AIIGCVVLYAGQVK 176 (550)
Q Consensus 163 aIaG~ivl~~Gn~~ 176 (550)
.+++.+++.+|-..
T Consensus 48 f~ia~~~ll~ga~~ 61 (97)
T PF06749_consen 48 FIIAEALLLAGASM 61 (97)
T ss_pred HHHHHHHHHHHHhc
Confidence 34555666666544
No 14
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=70.68 E-value=51 Score=30.48 Aligned_cols=64 Identities=20% Similarity=0.282 Sum_probs=45.5
Q ss_pred HHHhhhhccchhhccchhhhHHHHHhchHHHHHHHHHHHHHHHhhhhccccccccCCCccccHHHHHHHHHhhH
Q 008879 165 IGCVVLYAGQVKFRGSTKKTLEYVVYQADTTVQKLQEVSNNLATAKQISVQKVFLPSNVQSDIDNVESKLNSSA 238 (550)
Q Consensus 165 aG~ivl~~Gn~~fh~~~~~tl~yvv~~an~tv~~l~nVt~~l~~~k~~~v~~~~lP~d~~~~id~~~~~Lns~a 238 (550)
+|.+.+-+=--+|.+-+.-|..-+-+..+.....|++|+++|+.+|.. ..+.|+.+..+|+...
T Consensus 18 vGY~Y~wwKGws~sD~M~vTrr~m~~A~~~v~kql~~vs~~l~~tKkh----------LsqRId~vd~klDe~~ 81 (126)
T PF07889_consen 18 VGYGYMWWKGWSFSDLMFVTRRSMSDAVASVSKQLEQVSESLSSTKKH----------LSQRIDRVDDKLDEQK 81 (126)
T ss_pred HHheeeeecCCchhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHhhHHHHH
Confidence 344444445566777788888888888888899999999999999862 2355666666665443
No 15
>KOG4331 consensus Polytopic membrane protein Prominin [General function prediction only]
Probab=69.22 E-value=20 Score=42.23 Aligned_cols=104 Identities=16% Similarity=0.199 Sum_probs=63.6
Q ss_pred hhhHHHHHHhhhhHHHHHHHHHHHHHH----HHHHHHHHhcccCCCCC---------CCCchhHHHHHHHHHHHHHHHHH
Q 008879 99 RHYWASVAYTAAPLFVIAAIWFLGFGA----CLLFICIFHFCCKRKPY---------GYSKTAYALSLIFLIFFTIAAII 165 (550)
Q Consensus 99 ~hYwaSv~ftg~pg~iIAalwfi~fgl----~lli~~~c~CCc~rk~~---------~ysr~~~~~slillll~ti~aIa 165 (550)
|.||+=+.|-+ |+++-.+-++.+.+ +-++||||+|||++.++ ++.|.|.- +.+++.++..++
T Consensus 94 k~~~~lv~~~~--g~lv~sV~~v~~iil~p~~~~~yccc~C~~rc~~r~~~~~~~~~a~kR~~~~---l~Llvl~i~~li 168 (865)
T KOG4331|consen 94 KGDILLVIYEA--GMLVCSVILVLYIILKPSEGLCYCCCRCCRRCGGRIKSALKQDDACKRPCCE---LELLVLAIELLI 168 (865)
T ss_pred ccHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhHHhheeeeHhhhcCCCCchhccCcHhhhhHHH---HHHHHHHHHHHH
Confidence 45577666543 23333333333332 23456666666544221 23333433 457788888889
Q ss_pred HHhhhhccchhhccchhhhHHHHHhchHHHHHHHHHHHHHHH
Q 008879 166 GCVVLYAGQVKFRGSTKKTLEYVVYQADTTVQKLQEVSNNLA 207 (550)
Q Consensus 166 G~ivl~~Gn~~fh~~~~~tl~yvv~~an~tv~~l~nVt~~l~ 207 (550)
|++.+|..|+..+.++++..+..-+.++++=.-++.|-+.+.
T Consensus 169 gv~~~fvtnk~v~~~i~~s~~~m~~~~~dl~t~lrdv~~~l~ 210 (865)
T KOG4331|consen 169 GVFRAFVTNKPVMLRIKNSLEDMRRLATDLRTYLRDVPRDLM 210 (865)
T ss_pred HHHHHHHHhhHHHHhhhccHHHHHHHHHHHHHHHhccHHHHH
Confidence 999999999999999998887776766666555555544444
No 16
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=65.96 E-value=42 Score=32.23 Aligned_cols=35 Identities=14% Similarity=0.316 Sum_probs=18.8
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008879 278 FLFSIFGMQVLVYVLVIFGWILVTGTFILCGIFLL 312 (550)
Q Consensus 278 lv~si~g~r~lv~~lvilgwilv~~tWil~G~fl~ 312 (550)
+++...++...+.+++..+++++-+..+..|++.+
T Consensus 26 Lv~~~~~l~~~~s~~lg~~~lAlg~vL~~~g~~~~ 60 (191)
T PF04156_consen 26 LVLFISGLGALISFILGIALLALGVVLLSLGLLCL 60 (191)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344455555555566665555566666554
No 17
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=64.62 E-value=59 Score=27.42 Aligned_cols=13 Identities=15% Similarity=0.424 Sum_probs=5.7
Q ss_pred HHHhhHHHHHHHh
Q 008879 233 KLNSSASTVADET 245 (550)
Q Consensus 233 ~Lns~a~~i~~k~ 245 (550)
.|...+++++..+
T Consensus 35 ~L~~kt~~L~~~a 47 (89)
T PF00957_consen 35 ELEDKTEELSDNA 47 (89)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 3444444444443
No 18
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=61.83 E-value=4.9 Score=36.76 Aligned_cols=10 Identities=40% Similarity=0.448 Sum_probs=4.4
Q ss_pred HHhcccchhh
Q 008879 519 VIYGRERRYR 528 (550)
Q Consensus 519 v~~~r~~~~r 528 (550)
++++|+||||
T Consensus 20 ~~~~rRR~r~ 29 (130)
T PF12273_consen 20 YCHNRRRRRR 29 (130)
T ss_pred HHHHHHHhhc
Confidence 3344444444
No 19
>TIGR00383 corA magnesium Mg(2+) and cobalt Co(2+) transport protein (corA). The article in Microb Comp Genomics 1998;3(3):151-69 (Medline:98448512) discusses this family and suggests that some members may have functions other than Mg2+ transport.
Probab=61.36 E-value=66 Score=33.36 Aligned_cols=19 Identities=26% Similarity=0.641 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 008879 263 LILIAAIMLVLTFLGFLFS 281 (550)
Q Consensus 263 l~iva~vmllL~llglv~s 281 (550)
+-+++++++.+.+++-++|
T Consensus 261 LTvvt~IflP~t~IaGiyG 279 (318)
T TIGR00383 261 LTVVSTIFIPLTFIAGIYG 279 (318)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 4445555555555544443
No 20
>PF14979 TMEM52: Transmembrane 52
Probab=60.79 E-value=6.2 Score=37.17 Aligned_cols=35 Identities=31% Similarity=0.627 Sum_probs=15.4
Q ss_pred hHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhcccCCC
Q 008879 101 YWASVAYTAAPLFVIAAIWFLGFGACLLFICIFHFCCKRK 140 (550)
Q Consensus 101 YwaSv~ftg~pg~iIAalwfi~fgl~lli~~~c~CCc~rk 140 (550)
-|.++-+.++ ++++++.+++-| +..+|-+|||.||
T Consensus 15 ~W~~LWyIwL--ill~~~llLLCG---~ta~C~rfCClrk 49 (154)
T PF14979_consen 15 RWSSLWYIWL--ILLIGFLLLLCG---LTASCVRFCCLRK 49 (154)
T ss_pred ceehhhHHHH--HHHHHHHHHHHH---HHHHHHHHHHhcc
Confidence 4666655332 222333323233 2234457667554
No 21
>KOG4026 consensus Uncharacterized conserved protein [Function unknown]
Probab=59.51 E-value=74 Score=31.77 Aligned_cols=26 Identities=15% Similarity=0.315 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhccc
Q 008879 149 YALSLIFLIFFTIAAIIGCVVLYAGQ 174 (550)
Q Consensus 149 ~~~slillll~ti~aIaG~ivl~~Gn 174 (550)
+..+-...++.++..++||++-=.|=
T Consensus 110 ~~~cg~~q~~a~l~milGc~lyP~GW 135 (207)
T KOG4026|consen 110 FNMCGWMQGIAGLCMILGCALYPDGW 135 (207)
T ss_pred hhhhHHHHHHHHHHHHHHHHhcCCcc
Confidence 33333444555666678887654443
No 22
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=57.50 E-value=9.6 Score=27.95 Aligned_cols=21 Identities=29% Similarity=0.814 Sum_probs=10.0
Q ss_pred HHHHHHHH-HHhcccCCCCCCC
Q 008879 124 GACLLFIC-IFHFCCKRKPYGY 144 (550)
Q Consensus 124 gl~lli~~-~c~CCc~rk~~~y 144 (550)
|+++++++ +|+-||.||++.+
T Consensus 15 g~~iiii~~~~YaCcykk~~~~ 36 (38)
T PF02439_consen 15 GMAIIIICMFYYACCYKKHRRQ 36 (38)
T ss_pred HHHHHHHHHHHHHHHHcccccc
Confidence 44444433 2344566665544
No 23
>PF11169 DUF2956: Protein of unknown function (DUF2956); InterPro: IPR021339 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=54.45 E-value=12 Score=33.28 Aligned_cols=20 Identities=15% Similarity=0.288 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 008879 293 VIFGWILVTGTFILCGIFLL 312 (550)
Q Consensus 293 vilgwilv~~tWil~G~fl~ 312 (550)
..+-|+|++++|+.|++|++
T Consensus 83 ~~LPW~LL~lSW~gF~~Y~~ 102 (103)
T PF11169_consen 83 SWLPWGLLVLSWIGFIAYIF 102 (103)
T ss_pred cchhHHHHHHHHHHHHHHHH
Confidence 35679999999999999975
No 24
>PF14235 DUF4337: Domain of unknown function (DUF4337)
Probab=52.93 E-value=2.1e+02 Score=27.27 Aligned_cols=22 Identities=9% Similarity=0.216 Sum_probs=13.6
Q ss_pred HHHHHHHHhhHHHHHHHhhhhh
Q 008879 228 DNVESKLNSSASTVADETAKNS 249 (550)
Q Consensus 228 d~~~~~Lns~a~~i~~k~~~n~ 249 (550)
....++..+.++++.++.++..
T Consensus 79 ~~~~~~~~~e~~~l~~~A~~~e 100 (157)
T PF14235_consen 79 KKEKARYKSEAEELEAKAKEAE 100 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344566677777777765543
No 25
>PRK01919 tatB sec-independent translocase; Provisional
Probab=51.94 E-value=1.1e+02 Score=29.74 Aligned_cols=77 Identities=13% Similarity=0.194 Sum_probs=38.7
Q ss_pred HHHHHHhhhhccchhhccchhhhHHHHHhchHHHHHHHHH-HHHHHHhhhhccccccccCCCccccHHHHHHHHHhhHHH
Q 008879 162 AAIIGCVVLYAGQVKFRGSTKKTLEYVVYQADTTVQKLQE-VSNNLATAKQISVQKVFLPSNVQSDIDNVESKLNSSAST 240 (550)
Q Consensus 162 ~aIaG~ivl~~Gn~~fh~~~~~tl~yvv~~an~tv~~l~n-Vt~~l~~~k~~~v~~~~lP~d~~~~id~~~~~Lns~a~~ 240 (550)
++|+.++++..|=+++-+-+.. +.-.++++...++++++ +.+.++. +.+.+..+++++.+.+
T Consensus 10 liI~VVALiV~GPekLP~~aRt-lGk~i~k~Rr~~~d~K~ev~~E~e~----------------dElrk~~~~~e~~~~~ 72 (169)
T PRK01919 10 ALIGVVALVVIGPERLPRVART-AGALFGRAQRYINDVKAEVSREIEL----------------DELRKMKTDFESAARD 72 (169)
T ss_pred HHHHHHHHheeCchHhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhH----------------HHHHHHHHHHHHHHHH
Confidence 3344456667888887555444 33334555555555444 2222211 2244455556555555
Q ss_pred HHHHhhhhhHHHHHH
Q 008879 241 VADETAKNSHDIRDL 255 (550)
Q Consensus 241 i~~k~~~n~~~I~k~ 255 (550)
+.+.+.++...+++-
T Consensus 73 v~~si~~~~~~~~~~ 87 (169)
T PRK01919 73 VENTIHDNLSEHESD 87 (169)
T ss_pred HHHHHHHHHHHHHhh
Confidence 555555554444443
No 26
>PF07344 Amastin: Amastin surface glycoprotein; InterPro: IPR009944 This family contains the eukaryotic surface glycoprotein amastin (approximately 180 residues long).In Trypanosoma cruzi, amastin is particularly abundant during the amastigote stage.
Probab=49.67 E-value=1.3e+02 Score=28.23 Aligned_cols=35 Identities=20% Similarity=0.290 Sum_probs=27.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhh
Q 008879 283 FGMQVLVYVLVIFGWILVTGTFILCGIFLLLHNVAGDTCV 322 (550)
Q Consensus 283 ~g~r~lv~~lvilgwilv~~tWil~G~fl~l~~~vsDtCv 322 (550)
..+|+....+.+++++...++|.+.-.-+- ++.|.
T Consensus 91 ~~~r~v~l~L~~~~~~~~~v~wa~~v~~Y~-----~~~C~ 125 (155)
T PF07344_consen 91 SCLRWVCLVLNIVGIVTLLVVWALMVVVYY-----GGFCG 125 (155)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHc-----cCCCc
Confidence 356788888888999999999987766553 88885
No 27
>PRK09546 zntB zinc transporter; Reviewed
Probab=48.02 E-value=1.2e+02 Score=31.87 Aligned_cols=20 Identities=40% Similarity=0.725 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q 008879 262 ALILIAAIMLVLTFLGFLFSIFG 284 (550)
Q Consensus 262 ~l~iva~vmllL~llglv~si~g 284 (550)
.+-+++++.+-+.+ +.|++|
T Consensus 266 ~Ltilt~IflPlT~---IaGiyG 285 (324)
T PRK09546 266 TMSLMAMVFLPTTF---LTGLFG 285 (324)
T ss_pred HHHHHHHHHHHHHH---HHhhhc
Confidence 44445544444444 444454
No 28
>PF06084 Cytomega_TRL10: Cytomegalovirus TRL10 protein; InterPro: IPR009284 This family consists of several Cytomegalovirus TRL10 proteins. TRL10 represents a structural component of the virus particle and like the other HCMV envelope glycoproteins, is present in a disulphide-linked complex [].
Probab=47.18 E-value=9.8 Score=34.47 Aligned_cols=29 Identities=31% Similarity=0.547 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccchh
Q 008879 499 WIYVGLAMVSTAVMLSLIFWVIYGRERRY 527 (550)
Q Consensus 499 ~v~~gl~~lS~~~~l~~i~Wv~~~r~~~~ 527 (550)
..|-+=-+++.-.+|++||+++|+||+..
T Consensus 58 sawgagsfiatliillviffviy~re~~~ 86 (150)
T PF06084_consen 58 SAWGAGSFIATLIILLVIFFVIYSREEEK 86 (150)
T ss_pred hhcccchHHHHHHHHHHHhheeEeccccc
Confidence 34544445677788889999999999865
No 29
>COG4768 Uncharacterized protein containing a divergent version of the methyl-accepting chemotaxis-like domain [General function prediction only]
Probab=46.36 E-value=94 Score=29.08 Aligned_cols=22 Identities=27% Similarity=0.373 Sum_probs=15.1
Q ss_pred cHHHHHHHHHhhHHHHHHHhhh
Q 008879 226 DIDNVESKLNSSASTVADETAK 247 (550)
Q Consensus 226 ~id~~~~~Lns~a~~i~~k~~~ 247 (550)
++.+...++|++++.+.+++..
T Consensus 84 dl~~SV~~ln~s~r~~~~~~t~ 105 (139)
T COG4768 84 DLGQSVSDLNQSVRHLATRATN 105 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 3555667888888777777654
No 30
>KOG0859 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=44.86 E-value=60 Score=32.30 Aligned_cols=45 Identities=20% Similarity=0.354 Sum_probs=31.6
Q ss_pred HHHhhhhccchhhccchhhhHHHHHhchHHHHHHHHHHHHHHHhhhh
Q 008879 165 IGCVVLYAGQVKFRGSTKKTLEYVVYQADTTVQKLQEVSNNLATAKQ 211 (550)
Q Consensus 165 aG~ivl~~Gn~~fh~~~~~tl~yvv~~an~tv~~l~nVt~~l~~~k~ 211 (550)
+..+..|..|++|.+-..+=.+|..+.-+ +++|-.+-+.++..|.
T Consensus 95 a~ta~AysmN~EFs~vL~qqm~y~s~~p~--id~lskvkaqv~evk~ 139 (217)
T KOG0859|consen 95 AHTAVAYSMNKEFSSVLKQQMQYCSEHPE--ISKLAKVKAQVTEVKG 139 (217)
T ss_pred hhHHHHhHhHHHHHHHHHHHHHHHHcCcc--hhHHHHHHHHHHHHHH
Confidence 33466789999999888887888777655 6666666555555554
No 31
>PF10854 DUF2649: Protein of unknown function (DUF2649); InterPro: IPR021217 This entry is represented by Spiroplasma phage 1-C74, Orf10. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Members in this family of proteins are also annotated as Plectrovirus orf 10 transmembrane proteins however currently no function is known.
Probab=44.08 E-value=35 Score=27.55 Aligned_cols=31 Identities=19% Similarity=0.482 Sum_probs=23.2
Q ss_pred CCccCCChhhHHHHHHhhhhHHHHHHHHHHHHH
Q 008879 92 GGWNIKDRHYWASVAYTAAPLFVIAAIWFLGFG 124 (550)
Q Consensus 92 ggfni~n~hYwaSv~ftg~pg~iIAalwfi~fg 124 (550)
-+||+++..| +++-.|++..+.-..||.++.
T Consensus 28 ~~w~ltqneY--lt~MiGiWiVilFLtWf~lwm 58 (67)
T PF10854_consen 28 TTWNLTQNEY--LTIMIGIWIVILFLTWFLLWM 58 (67)
T ss_pred eeeccccchh--HHHHHHHHHHHHHHHHHHHHH
Confidence 3799999999 667778877777777765443
No 32
>KOG2348 consensus Urea transporter [Amino acid transport and metabolism]
Probab=42.60 E-value=28 Score=38.83 Aligned_cols=30 Identities=20% Similarity=0.551 Sum_probs=24.5
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008879 283 FGMQVLVYVLVIFGWILVTGTFILCGIFLL 312 (550)
Q Consensus 283 ~g~r~lv~~lvilgwilv~~tWil~G~fl~ 312 (550)
.|.+..+.=..+-||+.+.+.|++++.|..
T Consensus 577 ygskyIFSk~fF~gWviV~iiW~~~~a~~i 606 (667)
T KOG2348|consen 577 YGSKYIFSKLFFTGWVIVIIIWTFIAAFAI 606 (667)
T ss_pred cCccceeechhhhHHHHHHHHHHHHHHHhe
Confidence 466666666778899999999999999854
No 33
>COG0598 CorA Mg2+ and Co2+ transporters [Inorganic ion transport and metabolism]
Probab=42.59 E-value=1.1e+02 Score=32.26 Aligned_cols=11 Identities=18% Similarity=0.389 Sum_probs=5.5
Q ss_pred HHHHHHHHhhh
Q 008879 275 FLGFLFSIFGM 285 (550)
Q Consensus 275 llglv~si~g~ 285 (550)
-..++.|++|+
T Consensus 274 PpTlIagiyGM 284 (322)
T COG0598 274 PPTLITGFYGM 284 (322)
T ss_pred hhHHHHccccc
Confidence 34455555553
No 34
>PF11166 DUF2951: Protein of unknown function (DUF2951); InterPro: IPR021337 This family of proteins has no known function. It has a highly conserved sequence.
Probab=42.27 E-value=2.4e+02 Score=24.87 Aligned_cols=39 Identities=15% Similarity=0.318 Sum_probs=20.6
Q ss_pred cHHHHHHHHHhhHHHHHHHh---hhhhHHHHHHHHHHHHHHH
Q 008879 226 DIDNVESKLNSSASTVADET---AKNSHDIRDLLDSVRLALI 264 (550)
Q Consensus 226 ~id~~~~~Lns~a~~i~~k~---~~n~~~I~k~l~~v~l~l~ 264 (550)
..+.+.++|+...|.+.+.= ++|.++-+|=+..+.++++
T Consensus 36 ~qe~v~~kld~tlD~i~reRe~dee~k~~n~Knir~~Kmwil 77 (98)
T PF11166_consen 36 DQELVNQKLDRTLDEINREREEDEENKKKNDKNIRDIKMWIL 77 (98)
T ss_pred hHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 34556667777777766522 1244444444444554443
No 35
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=42.11 E-value=3.9e+02 Score=27.21 Aligned_cols=14 Identities=0% Similarity=0.133 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHHH
Q 008879 264 ILIAAIMLVLTFLG 277 (550)
Q Consensus 264 ~iva~vmllL~llg 277 (550)
..+++|.++++++.
T Consensus 155 ~aml~Vf~LF~lvm 168 (230)
T PF03904_consen 155 GAMLFVFMLFALVM 168 (230)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333444444433
No 36
>PF10242 L_HGMIC_fpl: Lipoma HMGIC fusion partner-like protein; InterPro: IPR019372 This is a group of proteins expressed from a series of genes referred to as Lipoma HGMIC fusion partner-like. The proteins carry four highly conserved transmembrane domains. In certain instances, as in LHFPL5, mutations cause deafness in humans [] or hypospadias []. LHFPL1 is transcribed in six liver tumour cell lines [].
Probab=41.88 E-value=1.2e+02 Score=29.46 Aligned_cols=59 Identities=15% Similarity=0.233 Sum_probs=32.1
Q ss_pred cccccCCCCCCCCcCCccCCCCCCCccccccccc-CCCCCCCCcccccCCccCCChhhHHHH-HHhh
Q 008879 45 VAVFAPDYNEGPSFAPVVGNDSESSSLVLAAKRT-YRQDPLNGFKRYSGGWNIKDRHYWASV-AYTA 109 (550)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~rt-~R~Dpl~~fk~Y~ggfni~n~hYwaSv-~ftg 109 (550)
++...|+|=.|+.-.+. ..++=|=.+.. +..+.-.+=+.|..+|.-.....|+.. +|.+
T Consensus 18 vsfi~P~Wl~~~~~~~~------~~sfGlf~rC~~~~~~~~~~C~~~~~~f~~iPs~~Wkaa~~~~~ 78 (181)
T PF10242_consen 18 VSFISPYWLGGSESTPY------SGSFGLFRRCSGQMDEWEQECGGYAESFGDIPSSAWKAAAFFVG 78 (181)
T ss_pred HHHcCchhccCCcCCCC------CceEEeehhhCcCCCCCCCccCCcCCCccccCcHHHHHHHHHHH
Confidence 45567899888654212 22444444444 566666666777744443333457544 5544
No 37
>PF14163 SieB: Superinfection exclusion protein B
Probab=41.82 E-value=19 Score=33.68 Aligned_cols=28 Identities=18% Similarity=0.294 Sum_probs=20.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008879 492 DLQAYSKWIYVGLAMVSTAVMLSLIFWVI 520 (550)
Q Consensus 492 ~L~~~~~~v~~gl~~lS~~~~l~~i~Wv~ 520 (550)
....|..|+|.+|++ |+++++..+++.+
T Consensus 28 ~~~~y~~~i~~~fl~-s~s~li~~~~~~~ 55 (151)
T PF14163_consen 28 FEIKYQPWIGLIFLF-SVSYLIAQLLSFI 55 (151)
T ss_pred HHHhcchHHHHHHHH-HHHHHHHHHHHHH
Confidence 345688888888876 7777777777665
No 38
>PF03908 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membrane glycoprotein associated with secretory pathway.
Probab=41.29 E-value=2.3e+02 Score=24.23 Aligned_cols=19 Identities=32% Similarity=0.422 Sum_probs=7.7
Q ss_pred hchHHHHHHHHHHHHHHHh
Q 008879 190 YQADTTVQKLQEVSNNLAT 208 (550)
Q Consensus 190 ~~an~tv~~l~nVt~~l~~ 208 (550)
++++.+.+.+..-+++|..
T Consensus 22 ~~s~~t~~~L~~Ss~~L~~ 40 (92)
T PF03908_consen 22 ERSELTLQTLEESSATLRS 40 (92)
T ss_pred HHHHHHHHHHHHhHHHHHH
Confidence 3344444444444444433
No 39
>KOG3882 consensus Tetraspanin family integral membrane protein [General function prediction only]
Probab=40.56 E-value=74 Score=31.57 Aligned_cols=42 Identities=19% Similarity=0.316 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 008879 259 VRLALILIAAIMLVLTFLGFLFSIFGMQVLVYVLVIFGWILV 300 (550)
Q Consensus 259 v~l~l~iva~vmllL~llglv~si~g~r~lv~~lvilgwilv 300 (550)
.-+.++++++++.+++++|+.-++...++++....++..++.
T Consensus 52 ~~~ili~~G~v~~~v~flGc~Ga~~es~~lL~~y~~~l~l~~ 93 (237)
T KOG3882|consen 52 PAYILIAVGGVVFLVGFLGCCGALRESRCLLLSYFILLLLLF 93 (237)
T ss_pred chhhhhhhhHHHHHHHHhhhhhhHhhhHHHHHHHHHHHHHHH
Confidence 356778888899999999999888888887655555544433
No 40
>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=40.03 E-value=16 Score=31.70 Aligned_cols=8 Identities=13% Similarity=0.297 Sum_probs=3.0
Q ss_pred HHHHHHHH
Q 008879 119 WFLGFGAC 126 (550)
Q Consensus 119 wfi~fgl~ 126 (550)
||++-|+|
T Consensus 37 ~lvI~~iF 44 (94)
T PF05393_consen 37 FLVICGIF 44 (94)
T ss_pred HHHHHHHH
Confidence 33333333
No 41
>PF15099 PIRT: Phosphoinositide-interacting protein family
Probab=40.02 E-value=19 Score=33.15 Aligned_cols=32 Identities=19% Similarity=0.324 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHH---HHHHHhcccchhhhhcc
Q 008879 501 YVGLAMVSTAVMLSL---IFWVIYGRERRYRIYTK 532 (550)
Q Consensus 501 ~~gl~~lS~~~~l~~---i~Wv~~~r~~~~r~~~~ 532 (550)
..|++++|+++|+++ +-|+.+-|++++|+...
T Consensus 82 ~~G~vlLs~GLmlL~~~alcW~~~~rkK~~kr~eS 116 (129)
T PF15099_consen 82 IFGPVLLSLGLMLLACSALCWKPIIRKKKKKRRES 116 (129)
T ss_pred hehHHHHHHHHHHHHhhhheehhhhHhHHHHhhhh
Confidence 568888999999877 44887766666554433
No 42
>PF02038 ATP1G1_PLM_MAT8: ATP1G1/PLM/MAT8 family; InterPro: IPR000272 The FXYD protein family contains at least seven members in mammals []. Two other family members that are not obvious orthologs of any identified mammalian FXYD protein exist in zebrafish. All these proteins share a signature sequence of six conserved amino acids comprising the FXYD motif in the NH2-terminus, and two glycines and one serine residue in the transmembrane domain. FXYD proteins are widely distributed in mammalian tissues with prominent expression in tissues that perform fluid and solute transport or that are electrically excitable. Initial functional characterisation suggested that FXYD proteins act as channels or as modulators of ion channels however studies have revealed that most FXYD proteins have another specific function and act as tissue-specific regulatory subunits of the Na,K-ATPase. Each of these auxiliary subunits produces a distinct functional effect on the transport characteristics of the Na,K-ATPase that is adjusted to the specific functional demands of the tissue in which the FXYD protein is expressed. FXYD proteins appear to preferentially associate with Na,K-ATPase alpha1-beta isozymes, and affect their function in a way that render them operationally complementary or supplementary to coexisting isozymes.; GO: 0005216 ion channel activity, 0006811 ion transport, 0016020 membrane; PDB: 2JO1_A 2JP3_A 2ZXE_G 3A3Y_G 3N23_E 3B8E_H 3KDP_G 3N2F_E.
Probab=37.41 E-value=39 Score=26.32 Aligned_cols=30 Identities=10% Similarity=0.305 Sum_probs=17.7
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhc
Q 008879 102 WASVAYTAAPLFVIAAIWFLGFGACLLFICIFHF 135 (550)
Q Consensus 102 waSv~ftg~pg~iIAalwfi~fgl~lli~~~c~C 135 (550)
|+++=.-| .++|++.|++ ||++++---|+|
T Consensus 11 y~tLrigG---Li~A~vlfi~-Gi~iils~kckC 40 (50)
T PF02038_consen 11 YETLRIGG---LIFAGVLFIL-GILIILSGKCKC 40 (50)
T ss_dssp HHHHHHHH---HHHHHHHHHH-HHHHHCTTHHHH
T ss_pred hhHhhccc---hHHHHHHHHH-HHHHHHcCcccc
Confidence 67776644 4778888664 655444323444
No 43
>PF10577 UPF0560: Uncharacterised protein family UPF0560; InterPro: IPR018890 This family of proteins has no known function.
Probab=37.03 E-value=44 Score=39.50 Aligned_cols=15 Identities=20% Similarity=0.308 Sum_probs=8.2
Q ss_pred hHHHHHHHhcccCCc
Q 008879 477 FVRETFNEIYRDHCP 491 (550)
Q Consensus 477 fVrdtF~~I~~~~C~ 491 (550)
-||--|-+..+.+|+
T Consensus 644 ~VRHSyIDLq~~~r~ 658 (807)
T PF10577_consen 644 QVRHSYIDLQRGGRN 658 (807)
T ss_pred heehhhhhhhhcccC
Confidence 355555555555554
No 44
>PF03172 Sp100: Sp100 domain; InterPro: IPR004865 The Sp100 and promyelocytic leukemia proteins (PML) are constituents of nuclear domains, known as nuclear dots (NDs or NBs - nuclear bodies or PML bodies), and are both covalently modified by the small ubiquitin-related protein SUMO-1. NBs play a role in autoimmunity, virus infections, and in the etiology of acute promyelocytic leukemia []. A functional nuclear localization signal and an NB-targeting region that coincides with an Sp100 homodimerization domain have been mapped. Sequences similar to the Sp100 homodimerization/ND-targeting region occur in several other proteins, which include the autoimmune regulator proteins (AIRE) and other numerous other transiently or permanently localised proteins. PML is expressed as a family of isoforms (PML I-VII) as a result of alternative splicing, most of which are found in the nucleus. Although there are many other functions of PML NBs in a wide range of cellular pathways, there is accumulating evidence that they represent preferential targets for viral infections and that PML plays a role in the mechanism of the antiviral action of interferon []. The Sp100 domain is usually found at the amino terminus of proteins that contain a SAND domain IPR000770 from INTERPRO. ; GO: 0005634 nucleus
Probab=36.47 E-value=32 Score=30.73 Aligned_cols=58 Identities=21% Similarity=0.410 Sum_probs=44.6
Q ss_pred HHHHHhhhhhccccccCCCchhHHHHHHHhcccCCchHHHHHHHHHHHHHHHHHHHHH
Q 008879 456 VNLCNGLENYGPFLAELQDCTFVRETFNEIYRDHCPDLQAYSKWIYVGLAMVSTAVML 513 (550)
Q Consensus 456 ~n~s~~L~~~~P~l~~L~dC~fVrdtF~~I~~~~C~~L~~~~~~v~~gl~~lS~~~~l 513 (550)
+..++++.+-+|||+.|.|.+|+-|.-=.-+.+-|..+..-.+-+|.-|-=+--....
T Consensus 15 vEIa~AI~kpFPfl~gLrD~~~ItE~~y~e~~e~crnlvpv~rvvY~vLs~Lek~f~~ 72 (103)
T PF03172_consen 15 VEIAYAITKPFPFLEGLRDHSFITEQMYKESQEACRNLVPVQRVVYNVLSWLEKTFIR 72 (103)
T ss_pred HHHHHHHcccchHHHHhhhcccccHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhH
Confidence 5678899999999999999999986644444589998888888888766555444443
No 45
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=36.26 E-value=2.7e+02 Score=23.70 Aligned_cols=37 Identities=8% Similarity=0.246 Sum_probs=21.4
Q ss_pred ccHHHHHHHHHhhHHHHHHHhhhhhHHHHHHHHHHHH
Q 008879 225 SDIDNVESKLNSSASTVADETAKNSHDIRDLLDSVRL 261 (550)
Q Consensus 225 ~~id~~~~~Lns~a~~i~~k~~~n~~~I~k~l~~v~l 261 (550)
..+++..+++....+.+.++..+......++++.=-+
T Consensus 38 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~V~e~P~ 74 (94)
T PF05957_consen 38 EALDDARDRAEDAADQAREQAREAAEQTEDYVRENPW 74 (94)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHChH
Confidence 3455556666666666666666655556665555333
No 46
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=35.62 E-value=5.6e+02 Score=28.18 Aligned_cols=34 Identities=24% Similarity=0.445 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHH-HhhhhccchhhccchhhhHH
Q 008879 151 LSLIFLIFFTIAAIIG-CVVLYAGQVKFRGSTKKTLE 186 (550)
Q Consensus 151 ~slillll~ti~aIaG-~ivl~~Gn~~fh~~~~~tl~ 186 (550)
..+.|.-++=.++|+| +..+.|||. |.+++.-+.
T Consensus 27 yfFlF~SLIQ~LIIlgLVLFmVYGn~--h~~te~~lq 61 (442)
T PF06637_consen 27 YFFLFVSLIQFLIILGLVLFMVYGNV--HVSTESRLQ 61 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCc--chhhHHHHH
Confidence 3344445556666777 667789998 656554333
No 47
>PF03348 Serinc: Serine incorporator (Serinc); InterPro: IPR005016 This is a family of proteins which display differential expression in various tumour and cell lines. The function of these proteins is unknown. ; GO: 0016020 membrane
Probab=35.57 E-value=1.1e+02 Score=33.82 Aligned_cols=77 Identities=23% Similarity=0.321 Sum_probs=46.9
Q ss_pred CCccCCChhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHh---cccCCCCCCCCchhHHHHHHHHHHHHHHHHHHHh
Q 008879 92 GGWNIKDRHYWASVAYTAAPLFVIAAIWFLGFGACLLFICIFH---FCCKRKPYGYSKTAYALSLIFLIFFTIAAIIGCV 168 (550)
Q Consensus 92 ggfni~n~hYwaSv~ftg~pg~iIAalwfi~fgl~lli~~~c~---CCc~rk~~~ysr~~~~~slillll~ti~aIaG~i 168 (550)
|.|=|-|+++..-..+.|. +++..|++..+++++=+... -|..|.+++.++..+...+..-+++-++++++.+
T Consensus 125 ~~FfiP~~~f~~~~~~v~~----~ga~~FiliQlIlLvDFah~wne~w~~~~e~~~s~~w~~~Li~~T~~~y~~si~~~v 200 (429)
T PF03348_consen 125 GAFFIPNGSFINVYMYVAR----VGAFIFILIQLILLVDFAHSWNESWVEKAEEGNSKRWYIALIGVTLLFYAASIAGIV 200 (429)
T ss_pred eeEEeCchHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCceehhHHHHHHHHHHHHHHHHHH
Confidence 4555677676665567665 56666677888888844442 2334444555566665555555666666666666
Q ss_pred hhhc
Q 008879 169 VLYA 172 (550)
Q Consensus 169 vl~~ 172 (550)
++|.
T Consensus 201 ~~y~ 204 (429)
T PF03348_consen 201 LMYV 204 (429)
T ss_pred HHHH
Confidence 6654
No 48
>TIGR03141 cytochro_ccmD heme exporter protein CcmD. The model for this protein family describes a small, hydrophobic, and only moderately well-conserved protein, tricky to identify accurately for all of these reasons. However, members are found as part of large operons involved in heme export across the inner membrane for assembly of c-type cytochromes in a large number of bacteria. The gray zone between the trusted cutoff (13.0) and noise cutoff (4.75) includes both low-scoring examples and false-positive matches to hydrophobic domains of longer proteins.
Probab=35.24 E-value=48 Score=24.92 Aligned_cols=34 Identities=24% Similarity=0.630 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhh
Q 008879 496 YSKWIYVGLAMVSTAVMLSLIFWVIYGRERRYRIY 530 (550)
Q Consensus 496 ~~~~v~~gl~~lS~~~~l~~i~Wv~~~r~~~~r~~ 530 (550)
|.-.||.+..+ +..++..+++|....|++.+|.-
T Consensus 4 y~~yVW~sYg~-t~l~l~~li~~~~~~~r~~~~~l 37 (45)
T TIGR03141 4 YAFYVWLAYGI-TALVLAGLILWSLLDRRRLLREL 37 (45)
T ss_pred ccHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44568888887 66677777778776666555543
No 49
>PF15345 TMEM51: Transmembrane protein 51
Probab=34.64 E-value=19 Score=36.52 Aligned_cols=33 Identities=24% Similarity=0.297 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccchhhhhccc
Q 008879 501 YVGLAMVSTAVMLSLIFWVIYGRERRYRIYTKQ 533 (550)
Q Consensus 501 ~~gl~~lS~~~~l~~i~Wv~~~r~~~~r~~~~~ 533 (550)
-+++++|.+++||+++--++--|.+|||+..-+
T Consensus 59 SVAyVLVG~Gv~LLLLSICL~IR~KRr~rq~~e 91 (233)
T PF15345_consen 59 SVAYVLVGSGVALLLLSICLSIRDKRRRRQGEE 91 (233)
T ss_pred EEEEehhhHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 456788888888877655555555555554433
No 50
>COG3162 Predicted membrane protein [Function unknown]
Probab=33.63 E-value=2.7e+02 Score=24.81 Aligned_cols=27 Identities=33% Similarity=0.405 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008879 289 VYVLVIFGWILVTGTFILCGIFLLLHN 315 (550)
Q Consensus 289 v~~lvilgwilv~~tWil~G~fl~l~~ 315 (550)
+..-+.+|......+|++.|+|.--+|
T Consensus 60 Vt~Gip~gvg~fv~tfVlt~IYv~rAn 86 (102)
T COG3162 60 VTRGIPFGVGVFVMTFVLTGIYVRRAN 86 (102)
T ss_pred eehhHhHHHHHHHHHHHHHHHHhhHhh
Confidence 334455666777789999999976555
No 51
>PF11887 DUF3407: Protein of unknown function (DUF3407); InterPro: IPR024516 This entry represents a domain of unknown function found at the C terminus of many proteins in the mammalian cell entry family.
Probab=33.27 E-value=2.3e+02 Score=29.13 Aligned_cols=33 Identities=24% Similarity=0.234 Sum_probs=15.3
Q ss_pred HHHHHHHHHhhHHHHHHHhhhhhHHHHHHHHHH
Q 008879 227 IDNVESKLNSSASTVADETAKNSHDIRDLLDSV 259 (550)
Q Consensus 227 id~~~~~Lns~a~~i~~k~~~n~~~I~k~l~~v 259 (550)
|+.+...+...+++..+-+++|.+.+.+.++..
T Consensus 96 L~~lL~~~~~~a~~~~~~l~~n~~~L~~~~~~L 128 (267)
T PF11887_consen 96 LDALLLSATGLADTGTDFLADNRDNLIRALDDL 128 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 444444444444444444455555555544443
No 52
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=32.96 E-value=67 Score=32.34 Aligned_cols=30 Identities=20% Similarity=0.215 Sum_probs=14.0
Q ss_pred hhhhHH-HHHHHHHHHHHHHHHHHHHHhcccC
Q 008879 108 TAAPLF-VIAAIWFLGFGACLLFICIFHFCCK 138 (550)
Q Consensus 108 tg~pg~-iIAalwfi~fgl~lli~~~c~CCc~ 138 (550)
.+.|++ +|+.+- +++|+++.+.++|.|||+
T Consensus 174 ~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~ 204 (224)
T PTZ00443 174 AAFAGFFTISSFA-FLFGILMGLMIALFAFSK 204 (224)
T ss_pred HHhhhHHHHHHHH-HHHHHHHHHHHHHHHccc
Confidence 334444 344433 335666644444545444
No 53
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=32.82 E-value=3.8e+02 Score=24.37 Aligned_cols=50 Identities=18% Similarity=0.382 Sum_probs=32.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hhh-hhHHHHHHHHHHHHH
Q 008879 249 SHDIRDLLDSVRLALILIAAIMLVLTFLGFLFS-IFG-MQVLVYVLVIFGWIL 299 (550)
Q Consensus 249 ~~~I~k~l~~v~l~l~iva~vmllL~llglv~s-i~g-~r~lv~~lvilgwil 299 (550)
..+++...+.+.+..-.|+++|..+. +|.++- +.| .+|.++++.++|+++
T Consensus 36 a~s~k~~~~a~klssefIsGilVGa~-iG~llD~~agTsPwglIv~lllGf~A 87 (116)
T COG5336 36 AESIKGYAQAFKLSSEFISGILVGAG-IGWLLDKFAGTSPWGLIVFLLLGFGA 87 (116)
T ss_pred chhhhhhhhhHHHHHHHHHHHHHHHH-HHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 45677777888888877777766553 555442 234 357777777777664
No 54
>PF04995 CcmD: Heme exporter protein D (CcmD); InterPro: IPR007078 The CcmD protein is part of a C-type cytochrome biogenesis operon []. The exact function of this protein is uncertain. It has been proposed that CcmC, CcmD and CcmE interact directly with each other, establishing a cytoplasm to periplasm haem delivery pathway for cytochrome c maturation []. This protein is found fused to CcmE in P52224 from SWISSPROT. These proteins contain a predicted transmembrane helix.; GO: 0006810 transport, 0016021 integral to membrane
Probab=32.42 E-value=60 Score=24.43 Aligned_cols=33 Identities=21% Similarity=0.517 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhh
Q 008879 496 YSKWIYVGLAMVSTAVMLSLIFWVIYGRERRYRI 529 (550)
Q Consensus 496 ~~~~v~~gl~~lS~~~~l~~i~Wv~~~r~~~~r~ 529 (550)
|.-.||.++.+ +..+++.+++|....+++-++.
T Consensus 3 y~~yVW~sYg~-t~~~l~~l~~~~~~~~r~~~~~ 35 (46)
T PF04995_consen 3 YGFYVWSSYGV-TALVLAGLIVWSLRRRRRLRKE 35 (46)
T ss_pred cHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 44568888876 5666666666776655554443
No 55
>PTZ00201 amastin surface glycoprotein; Provisional
Probab=32.11 E-value=90 Score=30.88 Aligned_cols=11 Identities=0% Similarity=-0.097 Sum_probs=7.0
Q ss_pred cccccccCCCC
Q 008879 43 ENVAVFAPDYN 53 (550)
Q Consensus 43 ~~~~~~~~~~~ 53 (550)
+.+|+-+|-+|
T Consensus 38 ~~~C~TlWG~K 48 (192)
T PTZ00201 38 VTPCLTLWGFK 48 (192)
T ss_pred CCeEEEeeecc
Confidence 45777766554
No 56
>COG3850 NarQ Signal transduction histidine kinase, nitrate/nitrite-specific [Signal transduction mechanisms]
Probab=32.07 E-value=3.5e+02 Score=31.02 Aligned_cols=20 Identities=10% Similarity=0.111 Sum_probs=12.5
Q ss_pred ccccCCCccccHHHHHHHHH
Q 008879 216 KVFLPSNVQSDIDNVESKLN 235 (550)
Q Consensus 216 ~~~lP~d~~~~id~~~~~Ln 235 (550)
++..|.+++..+.++.+.-.
T Consensus 86 ~~~~P~~~~~~y~~L~~~W~ 105 (574)
T COG3850 86 PWRVPLAVKTQYQQLIAYWR 105 (574)
T ss_pred hccChHhHHHHHHHHHHHHH
Confidence 45667777777776665443
No 57
>KOG3202 consensus SNARE protein TLG1/Syntaxin 6 [Intracellular trafficking, secretion, and vesicular transport]
Probab=31.64 E-value=2.8e+02 Score=28.38 Aligned_cols=26 Identities=4% Similarity=0.102 Sum_probs=16.7
Q ss_pred HHHHhhHHHHHHHhhhhhHHHHHHHH
Q 008879 232 SKLNSSASTVADETAKNSHDIRDLLD 257 (550)
Q Consensus 232 ~~Lns~a~~i~~k~~~n~~~I~k~l~ 257 (550)
.+|+...+.+.+|+..-.+++.++.+
T Consensus 183 Ddl~~e~d~t~srl~~~~~~l~~v~~ 208 (235)
T KOG3202|consen 183 DDLDNEMDRTESRLDRVMKRLAKVNR 208 (235)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46666667777776665666666554
No 58
>PF12729 4HB_MCP_1: Four helix bundle sensory module for signal transduction; InterPro: IPR024478 This entry represents a four-helix bundle that operates as a ubiquitous sensory module in prokaryotic signal-transduction, which is known as four-helix bundles methyl-accepting chemotaxis protein (4HB_MCP) domain. The 4HB_MCP is always found between two predicted transmembrane helices indicating that it detects only extracellular signals. In many cases the domain is associated with a cytoplasmic HAMP domain suggesting that most proteins carrying the bundle might share the mechanism of transmembrane signalling which is well-characterised in E coli chemoreceptors [].
Probab=31.58 E-value=2.7e+02 Score=24.83 Aligned_cols=20 Identities=10% Similarity=0.066 Sum_probs=13.0
Q ss_pred HhhhhccchhhccchhhhHH
Q 008879 167 CVVLYAGQVKFRGSTKKTLE 186 (550)
Q Consensus 167 ~ivl~~Gn~~fh~~~~~tl~ 186 (550)
.++++++-.+.++.+.++.+
T Consensus 23 ~~~~~~~l~~~~~~~~~i~~ 42 (181)
T PF12729_consen 23 GIVGLYSLSQINQNVEEIYE 42 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 36667777777776666433
No 59
>PRK11085 magnesium/nickel/cobalt transporter CorA; Provisional
Probab=31.43 E-value=5.4e+02 Score=27.28 Aligned_cols=22 Identities=27% Similarity=0.537 Sum_probs=14.9
Q ss_pred cccccccc--cCCCCCCCCccccc
Q 008879 70 SLVLAAKR--TYRQDPLNGFKRYS 91 (550)
Q Consensus 70 ~~~la~~r--t~R~Dpl~~fk~Y~ 91 (550)
+|+|..+| |-|..+...|..++
T Consensus 93 ~fil~~~~LvTvr~~~~~~f~~~~ 116 (316)
T PRK11085 93 AFTIRDGRLFTLRERELPAFRLYR 116 (316)
T ss_pred EEEEECCEEEEEecCCcchHHHHH
Confidence 67777776 56777777776554
No 60
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=31.01 E-value=4.2e+02 Score=29.16 Aligned_cols=12 Identities=8% Similarity=-0.208 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHH
Q 008879 293 VIFGWILVTGTF 304 (550)
Q Consensus 293 vilgwilv~~tW 304 (550)
.++.++++++.|
T Consensus 378 t~~~v~l~~~~~ 389 (395)
T PF10267_consen 378 TLLLVGLGAILW 389 (395)
T ss_pred HHHHHHHHHHHH
Confidence 334444455555
No 61
>KOG3462 consensus Predicted membrane protein [Function unknown]
Probab=30.53 E-value=1.1e+02 Score=27.04 Aligned_cols=30 Identities=30% Similarity=0.696 Sum_probs=15.7
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Q 008879 275 FLGFLFSIFGMQVLVYVLVIFGWILVTGTFILC 307 (550)
Q Consensus 275 llglv~si~g~r~lv~~lvilgwilv~~tWil~ 307 (550)
++|.+|+++|+ .+-+=.+.|++++.+.+++
T Consensus 38 ~lgmIfsmcGl---M~r~KwCsWlAl~cs~iSf 67 (105)
T KOG3462|consen 38 FLGMIFSMCGL---MFRLKWCSWLALYCSCISF 67 (105)
T ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 34555555553 1112235787777766654
No 62
>KOG3882 consensus Tetraspanin family integral membrane protein [General function prediction only]
Probab=30.42 E-value=87 Score=31.05 Aligned_cols=41 Identities=15% Similarity=0.278 Sum_probs=24.9
Q ss_pred chhHHHHHHHHHHHHHHHHHHHhhhhccchhhccchh-hhHH
Q 008879 146 KTAYALSLIFLIFFTIAAIIGCVVLYAGQVKFRGSTK-KTLE 186 (550)
Q Consensus 146 r~~~~~slillll~ti~aIaG~ivl~~Gn~~fh~~~~-~tl~ 186 (550)
|+.+..-.++++++-++-++++++.+.-.+++.+.+. +.++
T Consensus 79 ~~lL~~y~~~l~l~~i~e~~~~i~~~~~~~~l~~~~~~~~~~ 120 (237)
T KOG3882|consen 79 RCLLLSYFILLLLLFIAELAAGILAFVFRDSLRDELEEQLLK 120 (237)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhheeHHHHHHHHHHHHHH
Confidence 3344444455555666666777888877777766666 4443
No 63
>PF03623 Focal_AT: Focal adhesion targeting region; InterPro: IPR005189 Focal adhesion kinase (FAK) is a tyrosine kinase found in focal adhesions, intracellular signalling complexes that are formed following engagement of the extracellular matrix by integrins. The C-terminal "focal adhesion targeting" (FAT) region is necessary and sufficient for localizing FAK to focal adhesions. The crystal structure of FAT shows it forms a four-helix bundle that resembles those found in two other proteins involved in cell adhesion, alpha-catenin and vinculin []. The binding of FAT to the focal adhesion protein, paxillin, requires the integrity of the helical bundle, whereas binding to another focal adhesion protein, talin, does not.; GO: 0004713 protein tyrosine kinase activity, 0004871 signal transducer activity, 0006468 protein phosphorylation, 0007172 signal complex assembly, 0005925 focal adhesion; PDB: 1K05_C 1OW8_C 1OW7_C 3S9O_C 3B71_B 1K04_A 1OW6_C 3GM1_B 3GM3_A 3GM2_A ....
Probab=30.41 E-value=2.5e+02 Score=26.47 Aligned_cols=52 Identities=19% Similarity=0.251 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHhhhhccccc--cccCCCccccHHHHHHHHHhhHHHHHHHhh
Q 008879 194 TTVQKLQEVSNNLATAKQISVQK--VFLPSNVQSDIDNVESKLNSSASTVADETA 246 (550)
Q Consensus 194 ~tv~~l~nVt~~l~~~k~~~v~~--~~lP~d~~~~id~~~~~Lns~a~~i~~k~~ 246 (550)
+-+.-+++|...|..+-+ .+++ ..+|.+.+..|+-+.+-|++...++.+++.
T Consensus 36 ~y~~~VK~VG~~Lr~Ll~-sVd~~~~~l~~s~~~EVema~klL~~DM~eLi~~mk 89 (139)
T PF03623_consen 36 EYVDLVKNVGLALRDLLT-SVDQILPSLPSSVRREVEMAHKLLSKDMAELISAMK 89 (139)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHHHHGGGSHTTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555666666655542 2332 235777788888888888887777776653
No 64
>PHA03189 UL14 tegument protein; Provisional
Probab=30.11 E-value=64 Score=34.14 Aligned_cols=42 Identities=21% Similarity=0.489 Sum_probs=23.1
Q ss_pred hhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhccc------CCCCCCCCc
Q 008879 99 RHYWASVAYTAAPLFVIAAIWFLGFGACLLFICIFHFCC------KRKPYGYSK 146 (550)
Q Consensus 99 ~hYwaSv~ftg~pg~iIAalwfi~fgl~lli~~~c~CCc------~rk~~~ysr 146 (550)
.+||.+.+..|.-+ ..++ |+..+.+..+|+-|| ++++++|.|
T Consensus 286 ~~~W~t~g~ag~l~---~~v~---~~c~l~~l~~C~rlc~~r~~~w~~~~~YRR 333 (348)
T PHA03189 286 RSPWATRGMAGMLI---FGVC---FACYLVYLTLCGRLCYKRLLGWRHGEGYRR 333 (348)
T ss_pred cchhhhcchhhhhh---hhhh---hhHHHHHHHHHHHHhccccccccccccccc
Confidence 48999998877532 3333 333334445564445 334666655
No 65
>PF04341 DUF485: Protein of unknown function, DUF485; InterPro: IPR007436 This family includes several putative integral membrane proteins.
Probab=29.99 E-value=3e+02 Score=23.57 Aligned_cols=28 Identities=11% Similarity=0.196 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008879 289 VYVLVIFGWILVTGTFILCGIFLLLHNV 316 (550)
Q Consensus 289 v~~lvilgwilv~~tWil~G~fl~l~~~ 316 (550)
+.+-+++|.....++|++.++|....|-
T Consensus 52 ~t~g~~~g~~~~~~~~~l~~~Yv~~An~ 79 (91)
T PF04341_consen 52 LTLGIVLGLGQIVFAWVLTWLYVRRANR 79 (91)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 4455667778888999999999765543
No 66
>PF10873 DUF2668: Protein of unknown function (DUF2668); InterPro: IPR022640 Members in this family of proteins are annotated as cysteine and tyrosine-rich protein 1, however currently no function is known [].
Probab=29.88 E-value=29 Score=32.77 Aligned_cols=20 Identities=25% Similarity=0.272 Sum_probs=11.2
Q ss_pred hhHHHHH-HhhhhHHHHHHHH
Q 008879 100 HYWASVA-YTAAPLFVIAAIW 119 (550)
Q Consensus 100 hYwaSv~-ftg~pg~iIAalw 119 (550)
.|.++++ -||+.|++.+++.
T Consensus 52 ~yi~~~lsgtAIaGIVfgiVf 72 (155)
T PF10873_consen 52 AYIGDVLSGTAIAGIVFGIVF 72 (155)
T ss_pred hhhccccccceeeeeehhhHH
Confidence 4556654 5666665555544
No 67
>TIGR00996 Mtu_fam_mce virulence factor Mce family protein. Members of this paralogous family are found as six tandem homologous proteins in the same orientation per cassette, in four separate cassettes in Mycobacterium tuberculosis. The six members of each cassette represent six subfamilies. One subfamily includes the protein mce (mycobacterial cell entry), a virulence protein required for invasion of non-phagocytic cells.
Probab=29.37 E-value=3e+02 Score=28.07 Aligned_cols=35 Identities=20% Similarity=0.336 Sum_probs=18.4
Q ss_pred cHHHHHHHHHhhHHHHHHHhhhhhHHHHHHHHHHH
Q 008879 226 DIDNVESKLNSSASTVADETAKNSHDIRDLLDSVR 260 (550)
Q Consensus 226 ~id~~~~~Lns~a~~i~~k~~~n~~~I~k~l~~v~ 260 (550)
+++++.+++...++++.+-+.+|...|...++.+.
T Consensus 231 ~l~~~l~~l~~~~~~~~~~l~~~~~~l~~~l~~l~ 265 (291)
T TIGR00996 231 ALDDALAALSGASAQVRDLLAENRPNLPQALANLA 265 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 34444455555555555555555566665555543
No 68
>PF12732 YtxH: YtxH-like protein; InterPro: IPR024623 This family of uncharacterised proteins is found in bacteria. Proteins in this family are typically between 100 and 143 amino acids in length. The N-terminal region is the most conserved.
Probab=29.13 E-value=2.4e+02 Score=22.99 Aligned_cols=40 Identities=20% Similarity=0.073 Sum_probs=20.7
Q ss_pred HHHHHHHhhhhccchhhccchhhhHHHHHhchHHHHHHHHHHH
Q 008879 161 IAAIIGCVVLYAGQVKFRGSTKKTLEYVVYQADTTVQKLQEVS 203 (550)
Q Consensus 161 i~aIaG~ivl~~Gn~~fh~~~~~tl~yvv~~an~tv~~l~nVt 203 (550)
+-+++|.++++.-..+-. .++.+.+.++++++.+++.+..
T Consensus 7 ~Ga~~Ga~~glL~aP~sG---~e~R~~l~~~~~~~~~~~~~~~ 46 (74)
T PF12732_consen 7 AGAAAGAAAGLLFAPKSG---KETREKLKDKAEDLKDKAKDLY 46 (74)
T ss_pred HHHHHHHHHHHHhCCCCc---HHHHHHHHHHHHHHHHHHHHHH
Confidence 333455455544444433 3455566667766666555443
No 69
>COG2177 FtsX Cell division protein [Cell division and chromosome partitioning]
Probab=28.50 E-value=6.6e+02 Score=26.49 Aligned_cols=62 Identities=16% Similarity=0.179 Sum_probs=36.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hh------------------hhHHHHHHHHHHHHHHHHHHH
Q 008879 248 NSHDIRDLLDSVRLALILIAAIMLVLTFLGFLFSI----FG------------------MQVLVYVLVIFGWILVTGTFI 305 (550)
Q Consensus 248 n~~~I~k~l~~v~l~l~iva~vmllL~llglv~si----~g------------------~r~lv~~lvilgwilv~~tWi 305 (550)
..+++.+..+.++.+.+.++.+|.+-+++-..+++ .+ .+.+++-....|.+-..+.|+
T Consensus 155 wv~rL~ai~~~~~~v~~~~~~ll~~~~vllI~NtiR~~i~sRr~eIeVmklvGAt~~fI~~PFl~~g~~~gl~Ga~~~~~ 234 (297)
T COG2177 155 WVDRLFAILRLVRTVGIGLSILLALAAVLLIGNTIRLAIFSRRREIEVMKLVGATDSFIRRPFLYEGMLIGLLGALIALA 234 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhccchHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 45666667777777777666655554444433332 11 134555556667776777777
Q ss_pred HHHH
Q 008879 306 LCGI 309 (550)
Q Consensus 306 l~G~ 309 (550)
+++.
T Consensus 235 l~~~ 238 (297)
T COG2177 235 LAAL 238 (297)
T ss_pred HHHH
Confidence 7664
No 70
>PRK10404 hypothetical protein; Provisional
Probab=28.50 E-value=4.2e+02 Score=23.46 Aligned_cols=32 Identities=9% Similarity=0.235 Sum_probs=14.0
Q ss_pred HHHHHHHHHhhHHHHHHHhhhhhHHHHHHHHH
Q 008879 227 IDNVESKLNSSASTVADETAKNSHDIRDLLDS 258 (550)
Q Consensus 227 id~~~~~Lns~a~~i~~k~~~n~~~I~k~l~~ 258 (550)
++.+..+|....+.+..|..+..+.-+.+++.
T Consensus 47 L~~ar~~l~~~~~~~~~~~k~aa~~td~yV~e 78 (101)
T PRK10404 47 LDDVKKRVSQASDSYYYRAKQAVYRADDYVHE 78 (101)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh
Confidence 34444444444444444444433333444444
No 71
>PF06837 Fijivirus_P9-2: Fijivirus P9-2 protein; InterPro: IPR009650 This family consists of several Fijivirus specific P9-2 proteins from Rice black streaked dwarf virus (RBSDV) and Fiji disease virus. The function of this family is unknown.
Probab=28.46 E-value=4.8e+02 Score=25.87 Aligned_cols=35 Identities=20% Similarity=0.441 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhhccchhhccchhhhHHHH
Q 008879 151 LSLIFLIFFTIAAIIGCVVLYAGQVKFRGSTKKTLEYV 188 (550)
Q Consensus 151 ~slillll~ti~aIaG~ivl~~Gn~~fh~~~~~tl~yv 188 (550)
+|.++-++|=.+.++.+-++++ -|++++.++..++
T Consensus 117 ~SivfTi~fy~~~~V~iyLv~~---ffgD~I~~~~n~l 151 (214)
T PF06837_consen 117 FSIVFTILFYTLLFVSIYLVYF---FFGDQIIHCYNYL 151 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HhhhHHHHHHHHH
Confidence 4444444444444444444432 3445555555544
No 72
>PF15330 SIT: SHP2-interacting transmembrane adaptor protein, SIT
Probab=28.29 E-value=67 Score=28.80 Aligned_cols=32 Identities=19% Similarity=0.171 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccchhhhhccc
Q 008879 502 VGLAMVSTAVMLSLIFWVIYGRERRYRIYTKQ 533 (550)
Q Consensus 502 ~gl~~lS~~~~l~~i~Wv~~~r~~~~r~~~~~ 533 (550)
.=++++++.+++++++=+++-|..|||....+
T Consensus 2 ~Ll~il~llLll~l~asl~~wr~~~rq~k~~~ 33 (107)
T PF15330_consen 2 LLLGILALLLLLSLAASLLAWRMKQRQKKAGQ 33 (107)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhccccC
Confidence 34555666666666665555555555444333
No 73
>PF14023 DUF4239: Protein of unknown function (DUF4239)
Probab=28.08 E-value=5.6e+02 Score=24.82 Aligned_cols=14 Identities=14% Similarity=0.318 Sum_probs=7.7
Q ss_pred Hhhcchhhhchhhh
Q 008879 314 HNVAGDTCVAMNEY 327 (550)
Q Consensus 314 ~~~vsDtCvAmdey 327 (550)
+=+.|+..+.++.+
T Consensus 192 ~Pf~G~i~Vs~~p~ 205 (209)
T PF14023_consen 192 NPFSGPISVSPAPF 205 (209)
T ss_pred CCCCCCCCcCHHHH
Confidence 44556666655544
No 74
>PRK02935 hypothetical protein; Provisional
Probab=27.99 E-value=3.6e+02 Score=24.33 Aligned_cols=39 Identities=13% Similarity=0.530 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008879 271 LVLTFLGFLFSIFGMQVLVYVLVIFGWILVTGTFILCGIFLLLH 314 (550)
Q Consensus 271 llL~llglv~si~g~r~lv~~lvilgwilv~~tWil~G~fl~l~ 314 (550)
++++-+|+.| .+.+.+..++.++|.+++.+ +.++|+-+.
T Consensus 24 ~~vMy~Giff--~~~~~~m~ifm~~G~l~~l~---S~vvYFwiG 62 (110)
T PRK02935 24 FIVMYLGIFF--RESIIIMTIFMLLGFLAVIA---STVVYFWIG 62 (110)
T ss_pred HHHHHHHHHh--cccHHHHHHHHHHHHHHHHH---HHHHHHHHh
Confidence 3344455332 23455566666677766543 466666543
No 75
>COG3771 Predicted membrane protein [Function unknown]
Probab=27.23 E-value=2e+02 Score=25.08 Aligned_cols=27 Identities=30% Similarity=0.723 Sum_probs=19.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008879 283 FGMQVLVYVLVIFGWILVTGTFILCGIFLL 312 (550)
Q Consensus 283 ~g~r~lv~~lvilgwilv~~tWil~G~fl~ 312 (550)
+++..++-.+...|++ +.|+.||+|++
T Consensus 39 f~LSTLla~lF~~G~~---lgwli~g~fy~ 65 (97)
T COG3771 39 FRLSTLLATLFAAGFA---LGWLICGLFYL 65 (97)
T ss_pred hhHHHHHHHHHHHHHH---HHHHHHHHHHH
Confidence 3445666666666665 67999999986
No 76
>PF11023 DUF2614: Protein of unknown function (DUF2614); InterPro: IPR020912 This entry describes proteins of unknown function, which are thought to be membrane proteins.; GO: 0005887 integral to plasma membrane
Probab=27.07 E-value=2.3e+02 Score=25.86 Aligned_cols=27 Identities=11% Similarity=0.599 Sum_probs=14.9
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 008879 273 LTFLGFLFSIFGMQVLVYVLVIFGWILVT 301 (550)
Q Consensus 273 L~llglv~si~g~r~lv~~lvilgwilv~ 301 (550)
++.+|++| .+.+++..+++++|.+++.
T Consensus 25 vmy~gi~f--~~~~~im~ifmllG~L~~l 51 (114)
T PF11023_consen 25 VMYIGIFF--KASPIIMVIFMLLGLLAIL 51 (114)
T ss_pred HHhhhhhh--cccHHHHHHHHHHHHHHHH
Confidence 34445543 2445666677777765443
No 77
>PHA00094 VI minor coat protein
Probab=27.06 E-value=2.1e+02 Score=25.97 Aligned_cols=46 Identities=13% Similarity=0.265 Sum_probs=24.8
Q ss_pred hchhhhhhCCCCCCCCccccccCCcchhhHHHhhhHhhhhHHHHHHH
Q 008879 322 VAMNEYVQNPAAHTALDSIIPCVDKATAQDTLTRTKEVTSQLVEVVN 368 (550)
Q Consensus 322 vAmdeyv~nP~~~T~L~~iLPC~d~~ta~~~l~~skev~~~lv~~vN 368 (550)
+.|.+|.+--. .---|+..||+....+.+...-+=++-.++++..|
T Consensus 64 vlP~d~~~~~~-mvlPsNa~pCv~aI~Sari~vfVfD~K~r~l~y~~ 109 (112)
T PHA00094 64 ILPPDFVDAVS-MVVPSNAIPCVYAIFSAKAAVFVFDVKDRILGYLD 109 (112)
T ss_pred hCChHHHHHHH-HhcCCCchhHHHHHHHHhHHhhheehHHHHhhhcc
Confidence 36777776443 11246778999876666654333333334444333
No 78
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=26.80 E-value=1.2e+02 Score=22.95 Aligned_cols=17 Identities=6% Similarity=0.395 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q 008879 504 LAMVSTAVMLSLIFWVI 520 (550)
Q Consensus 504 l~~lS~~~~l~~i~Wv~ 520 (550)
..++..++.++++.|+.
T Consensus 14 ~~v~~~~~F~gi~~w~~ 30 (49)
T PF05545_consen 14 GTVLFFVFFIGIVIWAY 30 (49)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34445566666677776
No 79
>PF07062 Clc-like: Clc-like; InterPro: IPR010761 Clc proteins are a nine-member gene family of chloride channels that have diverse roles in the plasma membrane and in intracellular organelles, especially membrane excitability and the maintenance of osmotic balance [, ]. This family contains a number of Clc-like proteins that are approximately 250 residues long and their homologues. ; GO: 0016021 integral to membrane
Probab=26.77 E-value=3.3e+02 Score=27.35 Aligned_cols=56 Identities=16% Similarity=0.349 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008879 261 LALILIAAIMLVLTFLGFLFSIFG--MQVLVYVLVIFGWILVTGTFILCGIFLLLHNV 316 (550)
Q Consensus 261 l~l~iva~vmllL~llglv~si~g--~r~lv~~lvilgwilv~~tWil~G~fl~l~~~ 316 (550)
.+.+++...-++++++.+++++|. .+....+..++..+...++-+..|+|+.-++-
T Consensus 105 ~AvLil~~~s~lf~~lsi~~~iCa~c~~~~ai~~~v~~~ia~l~S~~g~~iF~~~a~~ 162 (211)
T PF07062_consen 105 KAVLILISFSMLFALLSICFGICAPCHPSFAIFYTVLVFIAALLSLIGLGIFFFNAHM 162 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444455666666666653 23444566666677788888888998776544
No 80
>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=25.60 E-value=68 Score=27.89 Aligned_cols=25 Identities=24% Similarity=0.580 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHH--hcccchhh
Q 008879 504 LAMVSTAVMLSLIFWVI--YGRERRYR 528 (550)
Q Consensus 504 l~~lS~~~~l~~i~Wv~--~~r~~~~r 528 (550)
++++...+++.+++|.+ .+|||-||
T Consensus 37 ~lvI~~iFil~VilwfvCC~kRkrsRr 63 (94)
T PF05393_consen 37 FLVICGIFILLVILWFVCCKKRKRSRR 63 (94)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccC
Confidence 66677777788888944 44444444
No 81
>PF02203 TarH: Tar ligand binding domain homologue; InterPro: IPR003122 Methyl-accepting chemotaxis proteins (MCPs) are a family of bacterial receptors that mediate chemotaxis to diverse signals, responding to changes in the concentration of attractants and repellents in the environment by altering swimming behaviour []. Environmental diversity gives rise to diversity in bacterial signalling receptors, and consequently there are many genes encoding MCPs []. For example, there are four well-characterised MCPs found in Escherichia coli: Tar (taxis towards aspartate and maltose, away from nickel and cobalt), Tsr (taxis towards serine, away from leucine, indole and weak acids), Trg (taxis towards galactose and ribose) and Tap (taxis towards dipeptides). MCPs share similar topology and signalling mechanisms. MCPs either bind ligands directly or interact with ligand-binding proteins, transducing the signal to downstream signalling proteins in the cytoplasm. MCPs undergo two covalent modifications: deamidation and reversible methylation at a number of glutamate residues. Attractants increase the level of methylation, while repellents decrease it. The methyl groups are added by the methyl-transferase cheR and are removed by the methylesterase cheB. Most MCPs are homodimers that contain the following organisation: an N-terminal signal sequence that acts as a transmembrane domain in the mature protein; a poorly-conserved periplasmic receptor (ligand-binding) domain; a second transmembrane domain; and a highly-conserved C-terminal cytoplasmic domain that interacts with downstream signalling components. The C-terminal domain contains the glycosylated glutamate residues. This entry represents the ligand-binding domain found in a number of methyl-accepting chemotaxis receptors.; GO: 0004888 transmembrane signaling receptor activity, 0006935 chemotaxis, 0007165 signal transduction, 0016020 membrane; PDB: 2ASR_A 3ATP_A 2D4U_A 2LIG_A 1VLS_A 1LIH_A 1WAT_B 1VLT_B 1WAS_A 1JMW_A.
Probab=25.59 E-value=1.6e+02 Score=27.07 Aligned_cols=31 Identities=13% Similarity=0.128 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHhhhhccchhhccchhhhHH
Q 008879 156 LIFFTIAAIIGCVVLYAGQVKFRGSTKKTLE 186 (550)
Q Consensus 156 lll~ti~aIaG~ivl~~Gn~~fh~~~~~tl~ 186 (550)
+.+|+++.++..+++++|-....+.+++..+
T Consensus 15 l~~~~~ll~~~~~~~~~~l~~~~~~l~~~~~ 45 (171)
T PF02203_consen 15 LALFLLLLLVVGGLGFWGLRSSNESLEEIYQ 45 (171)
T ss_dssp ----------HHCCCCCCHHHHHHHH-HHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555556678888888887777655443
No 82
>KOG0811 consensus SNARE protein PEP12/VAM3/Syntaxin 7/Syntaxin 17 [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.35 E-value=2.9e+02 Score=28.86 Aligned_cols=16 Identities=19% Similarity=0.459 Sum_probs=9.3
Q ss_pred cHHHHHHHHHhhHHHH
Q 008879 226 DIDNVESKLNSSASTV 241 (550)
Q Consensus 226 ~id~~~~~Lns~a~~i 241 (550)
.+|+++..+..+.+++
T Consensus 209 ~VDsIe~nve~a~~nv 224 (269)
T KOG0811|consen 209 LVDSIEANVENASVNV 224 (269)
T ss_pred HHhHHHHHHHHHHHHH
Confidence 4566666666655543
No 83
>PF07344 Amastin: Amastin surface glycoprotein; InterPro: IPR009944 This family contains the eukaryotic surface glycoprotein amastin (approximately 180 residues long).In Trypanosoma cruzi, amastin is particularly abundant during the amastigote stage.
Probab=25.14 E-value=5e+02 Score=24.37 Aligned_cols=14 Identities=36% Similarity=0.636 Sum_probs=6.4
Q ss_pred HHhhhhHHHHHHHH
Q 008879 106 AYTAAPLFVIAAIW 119 (550)
Q Consensus 106 ~ftg~pg~iIAalw 119 (550)
-|.++-+++|..+.
T Consensus 61 ~f~aa~afaIisi~ 74 (155)
T PF07344_consen 61 RFRAAQAFAIISIF 74 (155)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444444
No 84
>PHA00646 hypothetical protein
Probab=24.91 E-value=73 Score=25.81 Aligned_cols=29 Identities=21% Similarity=0.486 Sum_probs=21.9
Q ss_pred CccCCChhhHHHHHHhhhhHHHHHHHHHHHH
Q 008879 93 GWNIKDRHYWASVAYTAAPLFVIAAIWFLGF 123 (550)
Q Consensus 93 gfni~n~hYwaSv~ftg~pg~iIAalwfi~f 123 (550)
|||+++-.| ++.-.|++.++.-..||.++
T Consensus 27 ~~~~~~~eY--~~~MVgIWlvI~Fl~Wf~i~ 55 (65)
T PHA00646 27 MWNLTQNEY--LTLMVGIWLVILFLTWFSLW 55 (65)
T ss_pred EEeccccee--ehhHHHHHHHHHHHHHHHHH
Confidence 789999888 56777777777777776543
No 85
>PF12191 stn_TNFRSF12A: Tumour necrosis factor receptor stn_TNFRSF12A_TNFR domain; InterPro: IPR022316 The tumour necrosis factor (TNF) receptor (TNFR) superfamily comprises more than 20 type-I transmembrane proteins. Family members are defined based on similarity in their extracellular domain - a region that contains many cysteine residues arranged in a specific repetitive pattern []. The cysteines allow formation of an extended rod-like structure, responsible for ligand binding []. Upon receptor activation, different intracellular signalling complexes are assembled for different members of the TNFR superfamily, depending on their intracellular domains and sequences []. Activation of TNFRs can therefore induce a range of disparate effects, including cell proliferation, differentiation, survival, or apoptotic cell death, depending upon the receptor involved []. TNFRs are widely distributed and play important roles in many crucial biological processes, such as lymphoid and neuronal development, innate and adaptive immunity, and maintenance of cellular homeostasis []. Drugs that manipulate their signalling have potential roles in the prevention and treatment of many diseases, such as viral infections, coronary heart disease, transplant rejection, and immune disease []. TNF receptor 12 (also known as TWEAK receptor, and fibroblast growth factor-inducible-14 (Fn14)) has been implicated in endothelial cell growth and migration []. The receptor may also play a role in cell-matrix interactions [].; PDB: 2KN0_A 2RPJ_A 2KMZ_A 2EQP_A.
Probab=24.15 E-value=26 Score=32.39 Aligned_cols=32 Identities=22% Similarity=0.372 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHH-HHHHhcccchhhhhccc
Q 008879 502 VGLAMVSTAVMLSLI-FWVIYGRERRYRIYTKQ 533 (550)
Q Consensus 502 ~gl~~lS~~~~l~~i-~Wv~~~r~~~~r~~~~~ 533 (550)
+++-++|+++++.++ ..+++.|.||||+.+..
T Consensus 81 i~~sal~v~lVl~llsg~lv~rrcrrr~~~ttP 113 (129)
T PF12191_consen 81 ILGSALSVVLVLALLSGFLVWRRCRRREKFTTP 113 (129)
T ss_dssp ---------------------------------
T ss_pred hhhhHHHHHHHHHHHHHHHHHhhhhccccCCCc
Confidence 345556666665553 34556666666666553
No 86
>COG4768 Uncharacterized protein containing a divergent version of the methyl-accepting chemotaxis-like domain [General function prediction only]
Probab=24.05 E-value=5e+02 Score=24.42 Aligned_cols=19 Identities=21% Similarity=0.050 Sum_probs=9.8
Q ss_pred hccchhhhHHHHHhchHHH
Q 008879 177 FRGSTKKTLEYVVYQADTT 195 (550)
Q Consensus 177 fh~~~~~tl~yvv~~an~t 195 (550)
.-+.+.+++|++.++-+..
T Consensus 25 tlkkv~~tldevakt~~~l 43 (139)
T COG4768 25 TLKKVSKTLDEVAKTLKGL 43 (139)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3455566666654443333
No 87
>PF15050 SCIMP: SCIMP protein
Probab=23.90 E-value=94 Score=28.59 Aligned_cols=29 Identities=28% Similarity=0.628 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccchh
Q 008879 499 WIYVGLAMVSTAVMLSLIFWVIYGRERRY 527 (550)
Q Consensus 499 ~v~~gl~~lS~~~~l~~i~Wv~~~r~~~~ 527 (550)
|+-.+.++|-+++.|++|+.++..++.|+
T Consensus 9 WiiLAVaII~vS~~lglIlyCvcR~~lRq 37 (133)
T PF15050_consen 9 WIILAVAIILVSVVLGLILYCVCRWQLRQ 37 (133)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 55566667778888888998887655554
No 88
>PF13994 PgaD: PgaD-like protein
Probab=23.59 E-value=80 Score=29.20 Aligned_cols=27 Identities=22% Similarity=0.383 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHhcccchhhhhccc
Q 008879 507 VSTAVMLSLIFWVIYGRERRYRIYTKQ 533 (550)
Q Consensus 507 lS~~~~l~~i~Wv~~~r~~~~r~~~~~ 533 (550)
++++....++.|..|+|.|.+....+.
T Consensus 70 i~~~~a~~Li~Wa~yn~~Rf~~~~rr~ 96 (138)
T PF13994_consen 70 IALVNAVILILWAKYNRLRFRGRRRRR 96 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHhcchhhcc
Confidence 344555556889999977666554443
No 89
>PRK11677 hypothetical protein; Provisional
Probab=23.40 E-value=4.2e+02 Score=24.74 Aligned_cols=21 Identities=38% Similarity=0.531 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHhhhhccchh
Q 008879 156 LIFFTIAAIIGCVVLYAGQVK 176 (550)
Q Consensus 156 lll~ti~aIaG~ivl~~Gn~~ 176 (550)
++.|.+.+|+|.+++-+++..
T Consensus 7 ~i~livG~iiG~~~~R~~~~~ 27 (134)
T PRK11677 7 LIGLVVGIIIGAVAMRFGNRK 27 (134)
T ss_pred HHHHHHHHHHHHHHHhhccch
Confidence 344444444555555444443
No 90
>PF10233 Cg6151-P: Uncharacterized conserved protein CG6151-P; InterPro: IPR019365 This is a family of small, less than 200 residue long, proteins which are conserved from fungi to humans. The function of these proteins are unknown. The entry contains Golgi membrane proteins involved in vesicular trafficking that belong to the TVP18 family and the calcium channel flower protein from Drosophila. The flower proteins are calcium channels that regulates synaptic endocytosis and hence couples exo- with endocytosis. Isoform A and isoform B are mainly required in the nervous system and necessary in photoreceptor cells [].
Probab=22.80 E-value=3.1e+02 Score=24.94 Aligned_cols=27 Identities=26% Similarity=0.496 Sum_probs=15.5
Q ss_pred hHHHHHHHHHHHHHHHHHH---HHHHhccc
Q 008879 111 PLFVIAAIWFLGFGACLLF---ICIFHFCC 137 (550)
Q Consensus 111 pg~iIAalwfi~fgl~lli---~~~c~CCc 137 (550)
|.-+++.+|-++.|.++++ -+||++|-
T Consensus 22 ~~cii~gi~~i~~gfvv~~iE~P~l~~~c~ 51 (113)
T PF10233_consen 22 PVCIIFGIIMIVSGFVVLFIEAPFLCRICP 51 (113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHhCC
Confidence 3435666666666666544 45667654
No 91
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=22.77 E-value=60 Score=29.85 Aligned_cols=16 Identities=19% Similarity=0.175 Sum_probs=0.0
Q ss_pred CCCcccccccccCCCC
Q 008879 20 HGYGTSHFLASQTPLP 35 (550)
Q Consensus 20 ~~~~~~~~~~~~~~~~ 35 (550)
+++.++|-+.+++...
T Consensus 6 ssS~T~~~ISt~t~dt 21 (122)
T PF01102_consen 6 SSSVTKSYISTQTNDT 21 (122)
T ss_dssp ----------------
T ss_pred ccccccccccCCcCcc
Confidence 4566677776654433
No 92
>PF15050 SCIMP: SCIMP protein
Probab=22.68 E-value=90 Score=28.69 Aligned_cols=15 Identities=13% Similarity=0.487 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHhc
Q 008879 121 LGFGACLLFICIFHF 135 (550)
Q Consensus 121 i~fgl~lli~~~c~C 135 (550)
+..++.|.+||+|++
T Consensus 19 vS~~lglIlyCvcR~ 33 (133)
T PF15050_consen 19 VSVVLGLILYCVCRW 33 (133)
T ss_pred HHHHHHHHHHHHHHH
Confidence 555555666776655
No 93
>PF13903 Claudin_2: PMP-22/EMP/MP20/Claudin tight junction
Probab=22.58 E-value=4e+02 Score=24.19 Aligned_cols=7 Identities=29% Similarity=0.847 Sum_probs=3.4
Q ss_pred HhcccCC
Q 008879 133 FHFCCKR 139 (550)
Q Consensus 133 c~CCc~r 139 (550)
+.+|+++
T Consensus 91 ~~~~~~~ 97 (172)
T PF13903_consen 91 IGFCKRS 97 (172)
T ss_pred HHhhccc
Confidence 4555444
No 94
>PF10812 DUF2561: Protein of unknown function (DUF2561); InterPro: IPR024381 This family of proteins with unknown function appears to be found predominantly in Mycobacterium spp.
Probab=22.50 E-value=2.6e+02 Score=27.93 Aligned_cols=78 Identities=19% Similarity=0.157 Sum_probs=38.6
Q ss_pred ccCCccCCChhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCchhHHHHHHHHHHHHHHHHHHHhh
Q 008879 90 YSGGWNIKDRHYWASVAYTAAPLFVIAAIWFLGFGACLLFICIFHFCCKRKPYGYSKTAYALSLIFLIFFTIAAIIGCVV 169 (550)
Q Consensus 90 Y~ggfni~n~hYwaSv~ftg~pg~iIAalwfi~fgl~lli~~~c~CCc~rk~~~ysr~~~~~slillll~ti~aIaG~iv 169 (550)
|+-|+|.-+.+---= +..|+ =|++||.+.|...--.------.++..+.-+.....|.+...|...++.|+|.+-
T Consensus 8 ~r~g~d~~s~d~~DR-iLlG~----CaaiWLa~lG~~VaA~VaL~Dlgrg~~~~s~ss~T~WvLY~VI~VSaaVIagAVP 82 (207)
T PF10812_consen 8 YRRGPDTISPDVTDR-ILLGA----CAAIWLAALGVSVAATVALVDLGRGFHESSGSSGTPWVLYAVIGVSAAVIAGAVP 82 (207)
T ss_pred ccCCCCCCCcchhhH-HHHHH----HHHHHHHHHHHHHHHhheeecccCCccCcCCCCCCCEeehHHHHHHHHHHHHHHH
Confidence 455666433222111 45554 5899987766544221000111233223222233456666677777777877665
Q ss_pred hhc
Q 008879 170 LYA 172 (550)
Q Consensus 170 l~~ 172 (550)
++.
T Consensus 83 lLL 85 (207)
T PF10812_consen 83 LLL 85 (207)
T ss_pred HHH
Confidence 543
No 95
>KOG3827 consensus Inward rectifier K+ channel [Inorganic ion transport and metabolism]
Probab=21.96 E-value=1.4e+02 Score=32.60 Aligned_cols=36 Identities=11% Similarity=0.323 Sum_probs=22.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhcchhhh
Q 008879 283 FGMQVLVYVLVIFGWILVTGTFILCGI-FLLLHNVAGDTCV 322 (550)
Q Consensus 283 ~g~r~lv~~lvilgwilv~~tWil~G~-fl~l~~~vsDtCv 322 (550)
+.|||.+.++.. .-+++|.+||+ +++++..-+|.=.
T Consensus 60 ~kWR~~lliF~~----sf~~SWl~Fg~iwwlIA~~hGDL~~ 96 (400)
T KOG3827|consen 60 LKWRWMLLIFSL----SFVLSWLFFGVIWWLIAYAHGDLEP 96 (400)
T ss_pred hhhHHHHHHHHH----HHHHHHHHHHHHHHHHHHhhCCccc
Confidence 567764433322 22378999997 5777777788643
No 96
>KOG4117 consensus Heat shock factor binding protein [Transcription; Posttranslational modification, protein turnover, chaperones]
Probab=21.88 E-value=1.3e+02 Score=24.66 Aligned_cols=32 Identities=19% Similarity=0.289 Sum_probs=24.6
Q ss_pred cccHHHHHHHHHhhHHHHHHHhhhhhHHHHHH
Q 008879 224 QSDIDNVESKLNSSASTVADETAKNSHDIRDL 255 (550)
Q Consensus 224 ~~~id~~~~~Lns~a~~i~~k~~~n~~~I~k~ 255 (550)
++-+.++..+.+.+.+.|..|+.+....|.+.
T Consensus 22 Q~lLQq~QDkFQtMSDQII~RiDDM~~riDDL 53 (73)
T KOG4117|consen 22 QGLLQQTQDKFQTMSDQIIGRIDDMSSRIDDL 53 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHH
Confidence 44577888899999999999988766655543
No 97
>PF03229 Alpha_GJ: Alphavirus glycoprotein J; InterPro: IPR004913 The exact function of the herpesvirus glycoprotein J is unknown, but it appears to play a role in the inhibition of apotosis of the host cell [].; GO: 0019050 suppression by virus of host apoptosis
Probab=21.75 E-value=81 Score=28.79 Aligned_cols=25 Identities=28% Similarity=0.324 Sum_probs=12.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcc
Q 008879 111 PLFVIAAIWFLGFGACLLFICIFHFC 136 (550)
Q Consensus 111 pg~iIAalwfi~fgl~lli~~~c~CC 136 (550)
|+ +|++++++.++..-.+++..+||
T Consensus 87 p~-VIGGLcaL~LaamGA~~LLrR~c 111 (126)
T PF03229_consen 87 PL-VIGGLCALTLAAMGAGALLRRCC 111 (126)
T ss_pred hh-hhhHHHHHHHHHHHHHHHHHHHH
Confidence 44 57777765433222334445554
No 98
>PRK04654 sec-independent translocase; Provisional
Probab=21.62 E-value=7.2e+02 Score=25.13 Aligned_cols=35 Identities=11% Similarity=0.087 Sum_probs=19.0
Q ss_pred HHHHHhhhhccchhhccchhhhHHHHHhchHHHHHH
Q 008879 163 AIIGCVVLYAGQVKFRGSTKKTLEYVVYQADTTVQK 198 (550)
Q Consensus 163 aIaG~ivl~~Gn~~fh~~~~~tl~yvv~~an~tv~~ 198 (550)
.|+.+++++.|=+++=+-+..+..+ +++....+.+
T Consensus 11 lI~VVALlV~GPerLPe~aRtlGk~-irk~R~~~~~ 45 (214)
T PRK04654 11 LIAVVALVVLGPERLPKAARFAGLW-VRRARMQWDS 45 (214)
T ss_pred HHHHHHHHhcCchHHHHHHHHHHHH-HHHHHHHHHH
Confidence 3344566778888876655554443 3444333333
No 99
>PRK11677 hypothetical protein; Provisional
Probab=21.61 E-value=5.9e+02 Score=23.77 Aligned_cols=25 Identities=8% Similarity=0.010 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHhhhhccchhhccch
Q 008879 157 IFFTIAAIIGCVVLYAGQVKFRGST 181 (550)
Q Consensus 157 ll~ti~aIaG~ivl~~Gn~~fh~~~ 181 (550)
++..+..|+|.++||....-+....
T Consensus 4 ~~a~i~livG~iiG~~~~R~~~~~~ 28 (134)
T PRK11677 4 EYALIGLVVGIIIGAVAMRFGNRKL 28 (134)
T ss_pred HHHHHHHHHHHHHHHHHHhhccchh
Confidence 3566777899999998877655553
No 100
>PF10160 Tmemb_40: Predicted membrane protein; InterPro: IPR018781 This entry represents 280 amino acid region found in a group of proteins conserved from plants to humans. These are predicted to be membrane proteins, but apart from that their function is unknown.
Probab=21.37 E-value=2.6e+02 Score=29.01 Aligned_cols=39 Identities=18% Similarity=0.147 Sum_probs=20.5
Q ss_pred ccCCCCCCCCchhHHHHHHHHHHHHHHHHHHHhhhhccch
Q 008879 136 CCKRKPYGYSKTAYALSLIFLIFFTIAAIIGCVVLYAGQV 175 (550)
Q Consensus 136 Cc~rk~~~ysr~~~~~slillll~ti~aIaG~ivl~~Gn~ 175 (550)
|.+|.+-+-++..|.-..++ .++=.+-..||+++++|..
T Consensus 180 ~r~r~~LPar~SFY~Y~~~L-~~LN~~q~~Gs~Ll~~~~~ 218 (261)
T PF10160_consen 180 LRWRDRLPARPSFYRYVGIL-FLLNLLQSIGSGLLGYGAS 218 (261)
T ss_pred ccccccCCCCccHHHHHHHH-HHHHHHHHHHHHHHhcCCC
Confidence 33443334444455545443 4444455577788777644
No 101
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=21.23 E-value=1.3e+03 Score=26.67 Aligned_cols=55 Identities=15% Similarity=0.131 Sum_probs=30.0
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH------HHH-----HHhhcchhhhchhhhhhC
Q 008879 276 LGFLFSIFGMQVLVYVLVIFGWILVTGTFILCGI------FLL-----LHNVAGDTCVAMNEYVQN 330 (550)
Q Consensus 276 lglv~si~g~r~lv~~lvilgwilv~~tWil~G~------fl~-----l~~~vsDtCvAmdeyv~n 330 (550)
.+++++++++...+.+..++..+++++-|++.=. ++. +.+=..|.=..+.||...
T Consensus 149 ~~i~L~f~~~~~Alll~~~ll~~lli~P~~~~~~~~~~~~~l~~~r~~lr~~~td~v~G~~EL~~~ 214 (573)
T COG4987 149 VTIGLSFFSIPLALLLGLILLLLLLIIPTLFYRAGRKFGAHLAQGRAALRSQFTDWVQGQAELLIF 214 (573)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHc
Confidence 3455566777666666666666666666665322 222 123344555666666553
No 102
>KOG2196 consensus Nuclear porin [Nuclear structure]
Probab=21.11 E-value=4.8e+02 Score=26.88 Aligned_cols=73 Identities=22% Similarity=0.261 Sum_probs=48.0
Q ss_pred ccchhhhHHHHHhchHHHHHHHHHHHHHHHhhhhccccccccCCCccccHHHHHHHHHhhHHHHHHHhhhhhHHHHHHHH
Q 008879 178 RGSTKKTLEYVVYQADTTVQKLQEVSNNLATAKQISVQKVFLPSNVQSDIDNVESKLNSSASTVADETAKNSHDIRDLLD 257 (550)
Q Consensus 178 h~~~~~tl~yvv~~an~tv~~l~nVt~~l~~~k~~~v~~~~lP~d~~~~id~~~~~Lns~a~~i~~k~~~n~~~I~k~l~ 257 (550)
+.++..+.+-+..|-+.+-.++..|...|+.+.. |.|--+.+.++++-||...+.++ .+.+|+-.+++-+|
T Consensus 173 R~qty~~a~nidsqLk~l~~dL~~ii~~lN~~~~--------~~d~t~~~~qi~Kilnah~~sLq-wl~d~st~~e~k~d 243 (254)
T KOG2196|consen 173 REQTYKMAENIDSQLKRLSEDLKQIIKSLNTMSK--------TVDKTDPIIQIEKILNAHMDSLQ-WLDDNSTQLEKKLD 243 (254)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccC--------ccccCCchHHHHHHHHHHHHHHH-HHHhhhHHHHHHHH
Confidence 5666677777777777777888888888877653 34444457788888888877654 34445555555544
Q ss_pred HH
Q 008879 258 SV 259 (550)
Q Consensus 258 ~v 259 (550)
.+
T Consensus 244 ~i 245 (254)
T KOG2196|consen 244 KI 245 (254)
T ss_pred HH
Confidence 43
No 103
>PF05454 DAG1: Dystroglycan (Dystrophin-associated glycoprotein 1); InterPro: IPR008465 Dystroglycan is one of the dystrophin-associated glycoproteins, which is encoded by a 5.5 kb transcript in Homo sapiens. The protein product is cleaved into two non-covalently associated subunits, [alpha] (N-terminal) and [beta] (C-terminal). In skeletal muscle the dystroglycan complex works as a transmembrane linkage between the extracellular matrix and the cytoskeleton [alpha]-dystroglycan is extracellular and binds to merosin ([alpha]-2 laminin) in the basement membrane, while [beta]-dystroglycan is a transmembrane protein and binds to dystrophin, which is a large rod-like cytoskeletal protein, absent in Duchenne muscular dystrophy patients. Dystrophin binds to intracellular actin cables. In this way, the dystroglycan complex, which links the extracellular matrix to the intracellular actin cables, is thought to provide structural integrity in muscle tissues. The dystroglycan complex is also known to serve as an agrin receptor in muscle, where it may regulate agrin-induced acetylcholine receptor clustering at the neuromuscular junction. There is also evidence which suggests the function of dystroglycan as a part of the signal transduction pathway because it is shown that Grb2, a mediator of the Ras-related signal pathway, can interact with the cytoplasmic domain of dystroglycan. In general, aberrant expression of dystrophin-associated protein complex underlies the pathogenesis of Duchenne muscular dystrophy, Becker muscular dystrophy and severe childhood autosomal recessive muscular dystrophy. Interestingly, no genetic disease has been described for either [alpha]- or [beta]-dystroglycan. Dystroglycan is widely distributed in non-muscle tissues as well as in muscle tissues. During epithelial morphogenesis of kidney, the dystroglycan complex is shown to act as a receptor for the basement membrane. Dystroglycan expression in Mus musculus brain and neural retina has also been reported. However, the physiological role of dystroglycan in non-muscle tissues has remained unclear [].; PDB: 1EG4_P.
Probab=20.86 E-value=33 Score=36.06 Aligned_cols=9 Identities=22% Similarity=0.294 Sum_probs=0.0
Q ss_pred HHHHHHHhc
Q 008879 127 LLFICIFHF 135 (550)
Q Consensus 127 lli~~~c~C 135 (550)
.+|+|||++
T Consensus 163 ~iIa~icyr 171 (290)
T PF05454_consen 163 GIIACICYR 171 (290)
T ss_dssp ---------
T ss_pred HHHHHHhhh
Confidence 344444433
No 104
>PHA02898 virion envelope protein; Provisional
Probab=20.51 E-value=3.5e+02 Score=23.67 Aligned_cols=13 Identities=31% Similarity=0.588 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHH
Q 008879 154 IFLIFFTIAAIIG 166 (550)
Q Consensus 154 illll~ti~aIaG 166 (550)
++.+++.++.+.|
T Consensus 49 ii~FIlgivl~lG 61 (92)
T PHA02898 49 IISFILAIILILG 61 (92)
T ss_pred HHHHHHHHHHHHH
Confidence 4455555555555
No 105
>PF07662 Nucleos_tra2_C: Na+ dependent nucleoside transporter C-terminus; InterPro: IPR011657 This entry consists of nucleoside transport proteins. Q62773 from SWISSPROT is a purine-specific Na+-nucleoside cotransporter localised to the bile canalicular membrane []. Q62674 from SWISSPROT is a Na+-dependent nucleoside transporter selective for pyrimidine nucleosides and adenosine. It also transports the anti-viral nucleoside analogues AZT and ddC []. This entry covers the C terminus of this family of transporters.; PDB: 3TIJ_A.
Probab=20.49 E-value=7.4e+02 Score=24.90 Aligned_cols=54 Identities=20% Similarity=0.396 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh------HHHHHHHHHHHHHHHHHHHH
Q 008879 253 RDLLDSVRLALILIAAIMLVLTFLGFLFSIFGMQ------VLVYVLVIFGWILVTGTFIL 306 (550)
Q Consensus 253 ~k~l~~v~l~l~iva~vmllL~llglv~si~g~r------~lv~~lvilgwilv~~tWil 306 (550)
+...+.+++++.|.+-++-+++++.++=++++|= .-+.+=.++||+.-++.|++
T Consensus 49 ~Ga~~g~~la~~I~a~LIafvalial~N~~l~~ig~~~g~~~lsl~~ilGyif~P~awlm 108 (210)
T PF07662_consen 49 NGALDGLKLALNIGAMLIAFVALIALLNGVLGWIGSLFGIEGLSLQQILGYIFSPLAWLM 108 (210)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGT-TT--HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccHHHHHhhhhhHHHHHc
Confidence 3556668888888876666677666543333321 01355667788888777764
No 106
>KOG4050 consensus Glutamate transporter EAAC1-interacting protein GTRAP3-18 [Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=20.31 E-value=2.1e+02 Score=27.73 Aligned_cols=99 Identities=16% Similarity=0.225 Sum_probs=0.0
Q ss_pred ccccccccCCCCCCCCcccccCCccCCChhhHHHH-HHhhhhHHHHHHHH----------HHHHHHHHHHHHHH-----h
Q 008879 71 LVLAAKRTYRQDPLNGFKRYSGGWNIKDRHYWASV-AYTAAPLFVIAAIW----------FLGFGACLLFICIF-----H 134 (550)
Q Consensus 71 ~~la~~rt~R~Dpl~~fk~Y~ggfni~n~hYwaSv-~ftg~pg~iIAalw----------fi~fgl~lli~~~c-----~ 134 (550)
|+|-++|..|||| +.|||++..- |+|--|.|.- ..+.+-+|++.... .+...+.-++|-.. +
T Consensus 25 F~lgS~Rfa~Pd~-~D~~kW~nRV-isNLLYyQTNYfv~~it~~~l~~f~sp~~iilglivvvlvi~~liwa~~~~a~~k 102 (188)
T KOG4050|consen 25 FLLGSDRFARPDF-NDFKKWNNRV-ISNLLYYQTNYFVTFITLFLLHGFISPQDIILGLIVVVLVIGTLIWAASADANIK 102 (188)
T ss_pred hccCcccccCCCC-ccHHHHHHHH-HHHHHHHHHhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHhccHHHH
Q ss_pred cccCCCCCCCCchhHHHHHHHHHHHHHHHHHHHhhhh
Q 008879 135 FCCKRKPYGYSKTAYALSLIFLIFFTIAAIIGCVVLY 171 (550)
Q Consensus 135 CCc~rk~~~ysr~~~~~slillll~ti~aIaG~ivl~ 171 (550)
-|.++.+.-+--........++-+|..++.....+++
T Consensus 103 rmr~~hp~~~l~gvllv~yfli~v~~~vlv~~F~il~ 139 (188)
T KOG4050|consen 103 RMRTDHPLVTLAGVLLVGYFLISVFGGVLVFAFAILF 139 (188)
T ss_pred HHhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 107
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=20.20 E-value=34 Score=37.92 Aligned_cols=43 Identities=23% Similarity=0.296 Sum_probs=0.0
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhhc
Q 008879 489 HCPDLQAYSKWIYVGLAMVSTAVMLSLIFWVIYGRERRYRIYT 531 (550)
Q Consensus 489 ~C~~L~~~~~~v~~gl~~lS~~~~l~~i~Wv~~~r~~~~r~~~ 531 (550)
..++-+++...+.+-+.++.+.+++++++|++..++|||+.+.
T Consensus 344 p~~~~~~~~~~l~vVlgvavlivVv~viv~vc~~~rrrR~~~~ 386 (439)
T PF02480_consen 344 PSPRTSRGAALLGVVLGVAVLIVVVGVIVWVCLRCRRRRRQRD 386 (439)
T ss_dssp -------------------------------------------
T ss_pred CCCCCCcccchHHHHHHHHHHHHHHHHHhheeeeehhcccccc
Confidence 4555555555555555555566666667788877777776666
Done!