Query 008879
Match_columns 550
No_of_seqs 167 out of 224
Neff 5.9
Searched_HMMs 29240
Date Mon Mar 25 13:51:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008879.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008879hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3hd7_A Vesicle-associated memb 63.0 16 0.00054 30.4 6.3 18 227-244 38-55 (91)
2 3s8f_C Cytochrome C oxidase po 52.0 16 0.00055 25.2 3.6 26 99-127 6-31 (34)
3 4ev6_A Magnesium transport pro 47.3 42 0.0014 33.9 7.7 13 273-285 289-301 (339)
4 2iub_A CORA, divalent cation t 45.3 21 0.00071 36.6 5.1 20 263-285 306-325 (363)
5 2ks1_B Epidermal growth factor 40.3 3.8 0.00013 29.9 -1.0 10 518-527 31-40 (44)
6 3hd7_B Syntaxin-1A; membrane p 40.2 93 0.0032 26.4 7.6 17 226-242 50-66 (109)
7 2jwa_A Receptor tyrosine-prote 34.7 9.9 0.00034 27.8 0.4 11 518-528 31-41 (44)
8 2jp3_A FXYD domain-containing 33.9 36 0.0012 26.9 3.6 32 102-137 14-45 (67)
9 2kog_A Vesicle-associated memb 33.5 10 0.00035 33.3 0.4 10 233-242 72-81 (119)
10 3gm3_A Protein tyrosine kinase 29.9 99 0.0034 28.2 6.3 49 196-245 51-101 (153)
No 1
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=63.03 E-value=16 Score=30.38 Aligned_cols=18 Identities=22% Similarity=0.351 Sum_probs=8.9
Q ss_pred HHHHHHHHHhhHHHHHHH
Q 008879 227 IDNVESKLNSSASTVADE 244 (550)
Q Consensus 227 id~~~~~Lns~a~~i~~k 244 (550)
+++-.++|++.+....++
T Consensus 38 L~~kt~~L~~~s~~F~~~ 55 (91)
T 3hd7_A 38 LDDRADALQAGASQFETS 55 (91)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333445555555544444
No 2
>3s8f_C Cytochrome C oxidase polypeptide 2A; complex IV, respiratory chain, lipid cubic phase, monoolein, peroxide, electron transport, proton pump; HET: HEM HAS OLC; 1.80A {Thermus thermophilus} PDB: 2qpd_C* 2qpe_C* 3bvd_C* 3qjq_C* 3qjr_C* 3qjs_C* 3qjt_C* 3qju_C* 3qjv_C* 1xme_C* 3s8g_C* 4esl_C* 4ev3_C* 4f05_C* 4fa7_C* 4faa_C* 1ehk_C* 3eh3_C* 3eh4_C* 3eh5_C* ...
Probab=51.99 E-value=16 Score=25.19 Aligned_cols=26 Identities=12% Similarity=0.232 Sum_probs=19.4
Q ss_pred hhhHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 008879 99 RHYWASVAYTAAPLFVIAAIWFLGFGACL 127 (550)
Q Consensus 99 ~hYwaSv~ftg~pg~iIAalwfi~fgl~l 127 (550)
+.=|+++.+.|+ .|-+.|+.+|++++
T Consensus 6 ~GTl~~V~ilg~---~I~i~W~~vf~lFl 31 (34)
T 3s8f_C 6 KGALAVILVLTL---TILVFWLGVYAVFF 31 (34)
T ss_dssp HHHHHHHHHHHH---HHHHHHHHHHHHHH
T ss_pred cceehHHHHHHH---HHHHHHHHHHeeee
Confidence 556888888775 68899987776554
No 3
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=47.33 E-value=42 Score=33.90 Aligned_cols=13 Identities=23% Similarity=0.552 Sum_probs=6.5
Q ss_pred HHHHHHHHHHhhh
Q 008879 273 LTFLGFLFSIFGM 285 (550)
Q Consensus 273 L~llglv~si~g~ 285 (550)
++-+.++.|++|+
T Consensus 289 flP~T~IaGiyGM 301 (339)
T 4ev6_A 289 FAVPMWITGIYGM 301 (339)
T ss_dssp SSHHHHHHHHTTC
T ss_pred HHHHHHHHhhccC
Confidence 3334455566654
No 4
>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A
Probab=45.30 E-value=21 Score=36.58 Aligned_cols=20 Identities=45% Similarity=0.843 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhh
Q 008879 263 LILIAAIMLVLTFLGFLFSIFGM 285 (550)
Q Consensus 263 l~iva~vmllL~llglv~si~g~ 285 (550)
+-+++++++.+ .++.|++|+
T Consensus 306 LTiit~IflP~---T~IaGiyGM 325 (363)
T 2iub_A 306 LTIIATIFMPL---TFIAGIYGM 325 (363)
T ss_dssp HHHHHHHHHHH---HHHTTSCC-
T ss_pred HHHHHHHHHHH---HHHHhhhcc
Confidence 33444444334 445555553
No 5
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=40.31 E-value=3.8 Score=29.89 Aligned_cols=10 Identities=20% Similarity=0.301 Sum_probs=4.1
Q ss_pred HHHhcccchh
Q 008879 518 WVIYGRERRY 527 (550)
Q Consensus 518 Wv~~~r~~~~ 527 (550)
|.+|-|+||+
T Consensus 31 ~~~~~RRr~~ 40 (44)
T 2ks1_B 31 IGLFMRRRHI 40 (44)
T ss_dssp HHHHHHTTTC
T ss_pred HHHHhhhhHh
Confidence 3444444433
No 6
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=40.15 E-value=93 Score=26.42 Aligned_cols=17 Identities=24% Similarity=0.341 Sum_probs=9.5
Q ss_pred cHHHHHHHHHhhHHHHH
Q 008879 226 DIDNVESKLNSSASTVA 242 (550)
Q Consensus 226 ~id~~~~~Lns~a~~i~ 242 (550)
.+|+++..+..+.+++.
T Consensus 50 ~Id~Ie~nv~~a~~~v~ 66 (109)
T 3hd7_B 50 MIDRIEYNVEHAVDYVE 66 (109)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 35666666665555443
No 7
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=34.70 E-value=9.9 Score=27.75 Aligned_cols=11 Identities=18% Similarity=0.307 Sum_probs=6.0
Q ss_pred HHHhcccchhh
Q 008879 518 WVIYGRERRYR 528 (550)
Q Consensus 518 Wv~~~r~~~~r 528 (550)
|.+|-|+||.+
T Consensus 31 ~~~~~RRR~~~ 41 (44)
T 2jwa_A 31 FGILIKRRQQK 41 (44)
T ss_dssp HHHHHHHHCSC
T ss_pred HHhheehhhhh
Confidence 55655555543
No 8
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=33.92 E-value=36 Score=26.88 Aligned_cols=32 Identities=13% Similarity=0.273 Sum_probs=19.4
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhccc
Q 008879 102 WASVAYTAAPLFVIAAIWFLGFGACLLFICIFHFCC 137 (550)
Q Consensus 102 waSv~ftg~pg~iIAalwfi~fgl~lli~~~c~CCc 137 (550)
|+++=.-| .++|++.|+ .||.+++.=-|+|+.
T Consensus 14 Y~tLRigG---LifA~vLfi-~GI~iilS~kcrCk~ 45 (67)
T 2jp3_A 14 WESLQLGG---LIFGGLLCI-AGIALALSGKCKCRR 45 (67)
T ss_dssp GHHHHHHH---HHHHHHHHH-HHHHHHHTTHHHHHH
T ss_pred hHHheecc---hhhHHHHHH-HHHHHHHcCcccccC
Confidence 57776544 477888866 466665543455543
No 9
>2kog_A Vesicle-associated membrane protein 2; synaptobrevin, VAMP2, DPC micelle, snare, coiled coil, membrane fusion, transmembrane; NMR {Rattus norvegicus}
Probab=33.47 E-value=10 Score=33.25 Aligned_cols=10 Identities=30% Similarity=0.351 Sum_probs=3.9
Q ss_pred HHHhhHHHHH
Q 008879 233 KLNSSASTVA 242 (550)
Q Consensus 233 ~Lns~a~~i~ 242 (550)
+|+..+....
T Consensus 72 ~L~~~S~~F~ 81 (119)
T 2kog_A 72 ALQAGASQFE 81 (119)
T ss_dssp CCCSSSHHHH
T ss_pred HHHHHHHHHH
Confidence 3334443333
No 10
>3gm3_A Protein tyrosine kinase 2 beta; four-helix bundle, transferase; 2.60A {Homo sapiens} SCOP: a.24.14.0 PDB: 3gm1_A 3gm2_A 3u3f_A 3u3c_A 2lk4_A
Probab=29.87 E-value=99 Score=28.22 Aligned_cols=49 Identities=22% Similarity=0.311 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHhhhhccccc--cccCCCccccHHHHHHHHHhhHHHHHHHh
Q 008879 196 VQKLQEVSNNLATAKQISVQK--VFLPSNVQSDIDNVESKLNSSASTVADET 245 (550)
Q Consensus 196 v~~l~nVt~~l~~~k~~~v~~--~~lP~d~~~~id~~~~~Lns~a~~i~~k~ 245 (550)
++-+++|...|.+.-+ .||+ ..+|.+.+..|+-+.+-|++...++..++
T Consensus 51 ~~lVK~VGl~LR~Ll~-sVd~~~~~lp~s~~~EIema~k~L~kDM~eLIs~M 101 (153)
T 3gm3_A 51 VVVVKNVGLTLRKLIG-SVDDLLPSLPSSSRTEIEGTQKLLNKDLAELINKM 101 (153)
T ss_dssp HHHHHHHHHHHHHHHH-HHHHHGGGSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH-HHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555442 2432 34677777888888888988777777665
Done!