Query 008879
Match_columns 550
No_of_seqs 167 out of 224
Neff 5.9
Searched_HMMs 13730
Date Mon Mar 25 13:51:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008879.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/008879hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1k04a_ a.24.14.1 (A:) FAT dom 16.6 1.2E+02 0.009 25.1 6.2 49 196-245 44-94 (142)
2 d1rh5b_ f.23.28.1 (B:) Preprot 13.4 1.2E+02 0.0084 21.4 4.3 33 95-127 17-49 (56)
3 d1dx5i2 g.3.11.1 (I:388-422) T 13.3 28 0.0021 22.2 0.8 20 395-416 8-27 (35)
4 d1fftb2 f.17.2.1 (B:27-117) Cy 10.1 82 0.006 23.8 2.9 39 488-526 5-43 (91)
5 d1ls1a1 a.24.13.1 (A:1-88) Sig 8.6 99 0.0072 23.5 2.7 32 232-263 7-38 (88)
6 d1r3jc_ f.14.1.1 (C:) Potassiu 6.9 2.5E+02 0.019 20.9 4.7 7 522-528 95-101 (103)
7 d2asxa1 a.274.1.1 (A:278-331) 6.5 3.4E+02 0.025 17.6 6.2 23 222-244 30-52 (54)
8 d1xmec1 f.23.9.1 (C:2-34) Bact 5.8 2.6E+02 0.019 17.0 3.1 15 504-518 8-22 (33)
9 d1wgwa_ a.24.13.1 (A:) Signal 5.4 3E+02 0.022 20.8 4.3 35 230-264 10-44 (99)
10 d1t72a_ a.7.12.1 (A:) Phosphat 5.3 4.6E+02 0.033 21.5 6.0 37 172-208 4-40 (215)
No 1
>d1k04a_ a.24.14.1 (A:) FAT domain of focal adhesion kinase {Human (Homo sapiens) [TaxId: 9606]}
Probab=16.62 E-value=1.2e+02 Score=25.10 Aligned_cols=49 Identities=24% Similarity=0.367 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHhhhhccccc--cccCCCccccHHHHHHHHHhhHHHHHHHh
Q 008879 196 VQKLQEVSNNLATAKQISVQK--VFLPSNVQSDIDNVESKLNSSASTVADET 245 (550)
Q Consensus 196 v~~l~nVt~~l~~~k~~~v~~--~~lP~d~~~~id~~~~~Lns~a~~i~~k~ 245 (550)
+.-+++|...|.++-+ .+|+ ..+|.+.+..|+-+.+-|++...++.++.
T Consensus 44 ~~lVK~VG~~Lr~Ll~-svD~~~~~lp~~~~~eIema~klLskDm~eLi~~M 94 (142)
T d1k04a_ 44 VPMVKEVGLALRTLLA-TVDETIPLLPASTHREIEMAQKLLNSDLGELINKM 94 (142)
T ss_dssp HHHHHHHHHHHHHHHH-HHHHHGGGSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH-HHHHHhccCcHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 4445666666655542 2333 34687778888888888988887777665
No 2
>d1rh5b_ f.23.28.1 (B:) Preprotein translocase SecE subunit {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=13.36 E-value=1.2e+02 Score=21.40 Aligned_cols=33 Identities=15% Similarity=0.122 Sum_probs=22.7
Q ss_pred cCCChhhHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 008879 95 NIKDRHYWASVAYTAAPLFVIAAIWFLGFGACL 127 (550)
Q Consensus 95 ni~n~hYwaSv~ftg~pg~iIAalwfi~fgl~l 127 (550)
.|+-++|.+....+|+-.++++++-|++..+..
T Consensus 17 KP~~~Ef~~ia~v~~iG~~i~G~IGf~I~li~~ 49 (56)
T d1rh5b_ 17 KPTKDEYLAVAKVTALGISLLGIIGYIIHVPAT 49 (56)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467789999888888766666666655544433
No 3
>d1dx5i2 g.3.11.1 (I:388-422) Thrombomodulin, different EGF-like domains {Human (Homo sapiens) [TaxId: 9606]}
Probab=13.29 E-value=28 Score=22.19 Aligned_cols=20 Identities=25% Similarity=0.612 Sum_probs=14.7
Q ss_pred CccccCCCCCCCCCCCCCCCcc
Q 008879 395 VPILCNPFHPDFTDRTCTAGEL 416 (550)
Q Consensus 395 ~p~lCnPf~~~~~~~~C~~g~v 416 (550)
-|--|||..++ +-+||.|-+
T Consensus 8 CPAdCdP~~p~--~C~CPeGyI 27 (35)
T d1dx5i2 8 CPADCDPNTQA--SCECPEGYI 27 (35)
T ss_dssp EECEECTTSTT--CEECCTTEE
T ss_pred CCCccCCCCCC--cccCCCceE
Confidence 36789998764 567887764
No 4
>d1fftb2 f.17.2.1 (B:27-117) Cytochrome O ubiquinol oxidase, subunit II {Escherichia coli [TaxId: 562]}
Probab=10.07 E-value=82 Score=23.81 Aligned_cols=39 Identities=8% Similarity=-0.051 Sum_probs=20.5
Q ss_pred cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccch
Q 008879 488 DHCPDLQAYSKWIYVGLAMVSTAVMLSLIFWVIYGRERR 526 (550)
Q Consensus 488 ~~C~~L~~~~~~v~~gl~~lS~~~~l~~i~Wv~~~r~~~ 526 (550)
+...|..+....++.-.+.++.++++.+...++|.=-|+
T Consensus 5 dP~gp~a~~i~~L~~~~~~i~~iv~v~V~~~~~~~~~ry 43 (91)
T d1fftb2 5 DPKGQIGLEQRSLILTAFGLMLIVVIPAILMAVGFAWKY 43 (91)
T ss_dssp SCCSCCHHHHHHHHHHHHHHTTTTTTHHHHHHHTTTTTT
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhheee
Confidence 344555666666666555556655554444444443333
No 5
>d1ls1a1 a.24.13.1 (A:1-88) Signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}
Probab=8.55 E-value=99 Score=23.45 Aligned_cols=32 Identities=19% Similarity=0.342 Sum_probs=12.8
Q ss_pred HHHHhhHHHHHHHhhhhhHHHHHHHHHHHHHH
Q 008879 232 SKLNSSASTVADETAKNSHDIRDLLDSVRLAL 263 (550)
Q Consensus 232 ~~Lns~a~~i~~k~~~n~~~I~k~l~~v~l~l 263 (550)
+++.++...+..+..-+.+.|++.+..++.+|
T Consensus 7 ~~l~~a~~~l~g~~~i~E~~i~~~l~eir~AL 38 (88)
T d1ls1a1 7 ARLQEAIGRLRGRGRITEEDLKATLREIRRAL 38 (88)
T ss_dssp HHHHHHHHTTTTSCSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHH
Confidence 33333333333333223344444444444433
No 6
>d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}
Probab=6.89 E-value=2.5e+02 Score=20.89 Aligned_cols=7 Identities=57% Similarity=0.937 Sum_probs=2.7
Q ss_pred cccchhh
Q 008879 522 GRERRYR 528 (550)
Q Consensus 522 ~r~~~~r 528 (550)
.|+++||
T Consensus 95 ~~~~~rr 101 (103)
T d1r3jc_ 95 GREQERR 101 (103)
T ss_dssp HHHHHHT
T ss_pred HHHHHhc
Confidence 3333333
No 7
>d2asxa1 a.274.1.1 (A:278-331) Hypothetical protein AF1503 {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=6.53 E-value=3.4e+02 Score=17.58 Aligned_cols=23 Identities=9% Similarity=0.128 Sum_probs=16.5
Q ss_pred CccccHHHHHHHHHhhHHHHHHH
Q 008879 222 NVQSDIDNVESKLNSSASTVADE 244 (550)
Q Consensus 222 d~~~~id~~~~~Lns~a~~i~~k 244 (550)
+-.+.+.++.+.+|.+++++.+.
T Consensus 30 ~~~dEig~L~~~fn~M~~~l~~~ 52 (54)
T d2asxa1 30 NRADEIGILAKSIERLRRSLKVA 52 (54)
T ss_dssp TCCSHHHHHHHHHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHHHHHHH
Confidence 34456888888888888776554
No 8
>d1xmec1 f.23.9.1 (C:2-34) Bacterial ba3 type cytochrome c oxidase subunit IIa {Thermus thermophilus [TaxId: 274]}
Probab=5.79 E-value=2.6e+02 Score=16.96 Aligned_cols=15 Identities=33% Similarity=0.795 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHH
Q 008879 504 LAMVSTAVMLSLIFW 518 (550)
Q Consensus 504 l~~lS~~~~l~~i~W 518 (550)
+.++.+-.+.-++||
T Consensus 8 l~vi~il~l~ilvfw 22 (33)
T d1xmec1 8 LAVILVLTLTILVFW 22 (33)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444445778
No 9
>d1wgwa_ a.24.13.1 (A:) Signal recognition particle 54 kDa protein, SRP54 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=5.35 E-value=3e+02 Score=20.83 Aligned_cols=35 Identities=23% Similarity=0.347 Sum_probs=22.3
Q ss_pred HHHHHHhhHHHHHHHhhhhhHHHHHHHHHHHHHHH
Q 008879 230 VESKLNSSASTVADETAKNSHDIRDLLDSVRLALI 264 (550)
Q Consensus 230 ~~~~Lns~a~~i~~k~~~n~~~I~k~l~~v~l~l~ 264 (550)
+.++++++...+..+..-+...|+..++.++.+|+
T Consensus 10 L~~~i~~a~~~l~~~~~i~E~~I~~~l~eI~~ALL 44 (99)
T d1wgwa_ 10 LGRKITSALRSLSNATIINEEVLNAMLKEVCTALL 44 (99)
T ss_dssp HHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHH
Confidence 34566666666666655556677777777776654
No 10
>d1t72a_ a.7.12.1 (A:) Phosphate transport system protein PhoU {Aquifex aeolicus [TaxId: 63363]}
Probab=5.25 E-value=4.6e+02 Score=21.47 Aligned_cols=37 Identities=19% Similarity=0.253 Sum_probs=25.3
Q ss_pred ccchhhccchhhhHHHHHhchHHHHHHHHHHHHHHHh
Q 008879 172 AGQVKFRGSTKKTLEYVVYQADTTVQKLQEVSNNLAT 208 (550)
Q Consensus 172 ~Gn~~fh~~~~~tl~yvv~~an~tv~~l~nVt~~l~~ 208 (550)
.|.-+|+++..+..+.+.+-++.+...++...+.+..
T Consensus 4 ~~~~~~~~~L~~l~~~l~~M~~~v~~~l~~~~~al~~ 40 (215)
T d1t72a_ 4 GGGMKLFKELEETKEQVIKMAKLVQEAIDKATEALNK 40 (215)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556788888888888888777776666655444443
Done!