Query 008882
Match_columns 550
No_of_seqs 211 out of 1095
Neff 7.0
Searched_HMMs 46136
Date Thu Mar 28 17:46:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008882.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008882hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03202 protein argonaute; Pr 100.0 3.3E-89 7.1E-94 786.9 38.9 396 136-550 495-900 (900)
2 cd04657 Piwi_ago-like Piwi_ago 100.0 4.4E-86 9.6E-91 710.2 35.3 348 136-510 76-426 (426)
3 KOG1041 Translation initiation 100.0 3.8E-83 8.3E-88 731.3 37.0 393 138-550 480-876 (876)
4 cd04658 Piwi_piwi-like_Euk Piw 100.0 2E-78 4.3E-83 655.8 35.6 338 136-507 106-447 (448)
5 cd02826 Piwi-like Piwi-like: P 100.0 1.7E-77 3.7E-82 638.0 36.5 338 137-508 48-393 (393)
6 PF02171 Piwi: Piwi domain; I 100.0 2.9E-73 6.2E-78 585.5 27.7 298 191-511 1-302 (302)
7 KOG1042 Germ-line stem cell di 100.0 2.6E-71 5.6E-76 584.6 26.9 340 136-512 486-832 (845)
8 cd04659 Piwi_piwi-like_ProArk 100.0 1.8E-46 3.8E-51 401.5 28.9 291 168-508 93-402 (404)
9 COG1431 Argonaute homolog, imp 99.4 3E-12 6.4E-17 136.5 16.6 248 196-510 413-670 (685)
10 PTZ00146 fibrillarin; Provisio 96.5 0.0048 1E-07 63.4 6.3 13 369-381 250-262 (293)
11 PTZ00146 fibrillarin; Provisio 96.3 0.0069 1.5E-07 62.2 6.2 10 48-57 44-53 (293)
12 PF13032 DUF3893: Domain of un 95.2 0.042 9.2E-07 50.4 6.0 57 452-512 66-122 (138)
13 PF12764 Gly-rich_Ago1: Glycin 94.3 0.34 7.3E-06 41.5 8.6 31 71-103 60-90 (104)
14 KOG1596 Fibrillarin and relate 93.2 0.19 4E-06 50.0 6.0 8 138-145 135-142 (317)
15 PRK11617 endonuclease V; Provi 92.5 6 0.00013 39.3 15.5 48 453-510 170-217 (224)
16 KOG1596 Fibrillarin and relate 92.0 0.33 7.1E-06 48.3 5.9 12 369-380 274-285 (317)
17 PF08459 UvrC_HhH_N: UvrC Heli 87.5 3.7 8E-05 38.4 8.9 100 266-401 10-114 (155)
18 PLN03202 protein argonaute; Pr 87.4 0.22 4.8E-06 59.1 0.9 44 114-157 27-73 (900)
19 cd06559 Endonuclease_V Endonuc 87.3 11 0.00024 37.0 12.6 42 453-504 166-207 (208)
20 PRK11634 ATP-dependent RNA hel 84.4 1.8 3.8E-05 49.6 6.2 6 4-9 567-572 (629)
21 TIGR00194 uvrC excinuclease AB 83.7 6.1 0.00013 44.7 9.9 113 267-409 381-497 (574)
22 COG4371 Predicted membrane pro 79.3 4.9 0.00011 40.1 6.2 16 117-132 190-205 (334)
23 PRK12306 uvrC excinuclease ABC 77.9 15 0.00033 41.1 10.4 110 266-408 365-475 (519)
24 KOG4307 RNA binding protein RB 76.9 5.2 0.00011 45.3 6.2 15 14-28 787-801 (944)
25 PRK14670 uvrC excinuclease ABC 76.0 20 0.00044 40.6 10.8 114 266-408 357-471 (574)
26 PF00763 THF_DHG_CYH: Tetrahyd 75.6 15 0.00032 32.6 7.8 72 171-244 12-85 (117)
27 PRK14671 uvrC excinuclease ABC 74.0 16 0.00036 41.8 9.6 107 266-409 414-525 (621)
28 KOG3915 Transcription regulato 71.7 17 0.00037 39.4 8.3 9 137-145 204-212 (641)
29 PRK14667 uvrC excinuclease ABC 71.6 35 0.00075 38.7 11.3 107 266-409 360-471 (567)
30 COG1515 Nfi Deoxyinosine 3'end 71.6 99 0.0021 30.5 12.9 36 464-506 176-211 (212)
31 PRK14669 uvrC excinuclease ABC 70.6 25 0.00053 40.4 9.9 112 266-409 395-507 (624)
32 PRK14959 DNA polymerase III su 68.9 18 0.00038 41.4 8.3 10 172-181 548-557 (624)
33 PRK14672 uvrC excinuclease ABC 68.1 57 0.0012 37.7 12.0 108 266-409 453-564 (691)
34 PRK14194 bifunctional 5,10-met 67.5 28 0.0006 36.3 8.7 73 169-243 14-88 (301)
35 PRK14193 bifunctional 5,10-met 66.9 30 0.00066 35.7 8.8 74 169-244 13-88 (284)
36 PRK14187 bifunctional 5,10-met 66.1 33 0.00072 35.5 8.9 74 169-244 12-88 (294)
37 PRK00558 uvrC excinuclease ABC 65.2 39 0.00085 38.6 10.2 104 266-401 382-486 (598)
38 PRK14166 bifunctional 5,10-met 64.7 33 0.00071 35.4 8.5 73 170-244 12-86 (282)
39 PRK14169 bifunctional 5,10-met 64.7 35 0.00076 35.2 8.8 73 170-244 12-86 (282)
40 PRK14176 bifunctional 5,10-met 64.1 43 0.00092 34.6 9.3 74 169-244 18-94 (287)
41 PRK14185 bifunctional 5,10-met 63.9 33 0.00071 35.6 8.4 73 170-244 12-87 (293)
42 PRK14183 bifunctional 5,10-met 63.6 37 0.00081 34.9 8.7 73 170-244 12-87 (281)
43 PRK14180 bifunctional 5,10-met 63.6 37 0.0008 35.0 8.7 73 170-244 12-87 (282)
44 PRK14666 uvrC excinuclease ABC 63.5 67 0.0015 37.2 11.5 100 266-400 471-571 (694)
45 PRK14192 bifunctional 5,10-met 62.5 40 0.00086 34.7 8.8 82 169-252 13-99 (283)
46 PRK14170 bifunctional 5,10-met 62.1 39 0.00084 34.9 8.5 73 170-244 13-87 (284)
47 PRK14182 bifunctional 5,10-met 62.0 40 0.00086 34.8 8.6 73 170-244 12-86 (282)
48 PRK14171 bifunctional 5,10-met 61.4 45 0.00099 34.5 8.9 72 171-244 14-88 (288)
49 PRK14190 bifunctional 5,10-met 61.3 42 0.00092 34.6 8.7 74 169-244 13-88 (284)
50 PRK14167 bifunctional 5,10-met 60.8 44 0.00096 34.7 8.7 73 170-244 13-87 (297)
51 PRK14184 bifunctional 5,10-met 60.3 48 0.001 34.2 8.9 72 170-243 12-86 (286)
52 PRK14175 bifunctional 5,10-met 60.0 43 0.00094 34.6 8.5 72 170-243 14-87 (286)
53 PRK14189 bifunctional 5,10-met 59.5 51 0.0011 34.0 8.9 73 169-243 13-87 (285)
54 PRK14188 bifunctional 5,10-met 59.4 50 0.0011 34.3 8.9 73 170-244 13-88 (296)
55 PRK14174 bifunctional 5,10-met 59.1 48 0.001 34.4 8.7 73 170-244 12-87 (295)
56 PLN02516 methylenetetrahydrofo 58.8 54 0.0012 34.1 8.9 73 170-244 20-95 (299)
57 KOG3915 Transcription regulato 58.2 32 0.0007 37.4 7.2 10 168-177 201-210 (641)
58 PRK14186 bifunctional 5,10-met 57.9 52 0.0011 34.2 8.7 74 170-245 13-89 (297)
59 PRK14168 bifunctional 5,10-met 57.9 51 0.0011 34.2 8.6 74 169-244 13-89 (297)
60 PRK10792 bifunctional 5,10-met 57.4 52 0.0011 34.0 8.5 74 169-244 13-89 (285)
61 PF12764 Gly-rich_Ago1: Glycin 57.2 89 0.0019 27.1 8.4 9 89-97 80-88 (104)
62 PLN02897 tetrahydrofolate dehy 57.0 53 0.0012 34.8 8.6 74 169-244 66-142 (345)
63 PLN02616 tetrahydrofolate dehy 56.8 55 0.0012 34.9 8.7 73 169-243 83-158 (364)
64 PRK14179 bifunctional 5,10-met 54.6 68 0.0015 33.1 8.8 73 170-244 13-88 (284)
65 PRK14172 bifunctional 5,10-met 54.3 67 0.0015 33.1 8.7 74 169-244 12-88 (278)
66 KOG1924 RhoA GTPase effector D 52.4 1.2E+02 0.0025 35.5 10.7 21 458-479 965-985 (1102)
67 PRK14177 bifunctional 5,10-met 52.0 80 0.0017 32.6 8.8 78 170-249 14-96 (284)
68 PRK14191 bifunctional 5,10-met 51.0 82 0.0018 32.5 8.8 73 170-244 12-87 (285)
69 PRK14178 bifunctional 5,10-met 50.0 81 0.0018 32.5 8.5 58 186-245 24-83 (279)
70 PRK14173 bifunctional 5,10-met 48.1 78 0.0017 32.7 8.1 56 187-244 28-85 (287)
71 PRK14668 uvrC excinuclease ABC 47.5 1.3E+02 0.0029 34.2 10.5 107 266-407 374-483 (577)
72 PRK14181 bifunctional 5,10-met 46.6 90 0.002 32.3 8.2 56 186-243 24-81 (287)
73 KOG1924 RhoA GTPase effector D 42.9 91 0.002 36.4 8.1 19 111-129 615-634 (1102)
74 PF04493 Endonuclease_5: Endon 42.7 1.2E+02 0.0026 29.8 8.1 32 466-503 175-206 (206)
75 KOG3123 Diphthine synthase [Tr 42.4 26 0.00056 34.4 3.3 55 168-224 111-166 (272)
76 COG0190 FolD 5,10-methylene-te 38.8 1.4E+02 0.0031 30.8 8.1 73 169-243 10-85 (283)
77 PRK00766 hypothetical protein; 38.7 36 0.00078 33.1 3.7 36 465-507 152-187 (194)
78 PF15320 RAM: mRNA cap methyla 37.1 73 0.0016 26.6 4.8 8 2-9 37-44 (81)
79 PF02772 S-AdoMet_synt_M: S-ad 37.0 21 0.00046 32.0 1.7 31 481-511 12-42 (120)
80 cd01457 vWA_ORF176_type VWA OR 35.7 2.2E+02 0.0047 27.1 8.8 67 329-400 80-151 (199)
81 PF09373 PMBR: Pseudomurein-bi 34.1 43 0.00094 22.7 2.5 23 334-357 11-33 (33)
82 COG0322 UvrC Nuclease subunit 32.8 3E+02 0.0064 31.5 10.3 107 266-408 378-486 (581)
83 PF01949 DUF99: Protein of unk 29.0 34 0.00074 33.0 1.8 42 458-506 140-181 (187)
84 COG4371 Predicted membrane pro 28.1 1.1E+02 0.0025 30.8 5.3 8 17-24 72-79 (334)
85 PHA02969 hypothetical protein; 26.4 58 0.0013 27.8 2.5 53 192-245 6-64 (111)
86 PF05642 Sporozoite_P67: Sporo 26.2 6.6E+02 0.014 28.6 11.0 9 268-276 493-501 (727)
87 PF08795 DUF1796: Putative pap 24.8 3.3E+02 0.0071 25.6 7.7 55 335-398 102-161 (167)
88 PF01023 S_100: S-100/ICaBP ty 24.3 69 0.0015 23.3 2.3 39 335-378 3-41 (44)
89 smart00157 PRP Major prion pro 23.9 2.1E+02 0.0045 27.7 5.9 13 169-181 147-159 (217)
90 COG0192 MetK S-adenosylmethion 23.7 46 0.00099 35.2 1.7 33 479-511 125-157 (388)
91 COG4634 Uncharacterized protei 23.1 1.5E+02 0.0033 26.2 4.5 35 350-384 66-101 (113)
92 PHA03264 envelope glycoprotein 22.5 3.5E+02 0.0076 29.0 7.8 15 117-131 384-398 (416)
93 PF02084 Bindin: Bindin; Inte 21.8 8.1E+02 0.018 24.5 9.8 7 236-242 178-184 (238)
94 PRK05592 rplO 50S ribosomal pr 21.8 1.1E+02 0.0023 28.4 3.7 15 8-22 20-34 (146)
95 PLN03138 Protein TOC75; Provis 21.8 90 0.0019 36.8 3.7 12 391-402 555-566 (796)
96 KOG0132 RNA polymerase II C-te 21.0 1.3E+02 0.0027 35.2 4.5 13 25-37 700-712 (894)
97 smart00157 PRP Major prion pro 20.9 2.8E+02 0.006 26.9 6.1 6 217-222 161-166 (217)
98 KOG0105 Alternative splicing f 20.6 90 0.002 30.2 2.9 28 12-39 82-109 (241)
99 cd06536 CIDE_N_ICAD CIDE_N dom 20.5 1.1E+02 0.0024 25.5 3.0 35 333-367 23-59 (80)
100 KOG2675 Adenylate cyclase-asso 20.0 1.2E+02 0.0025 33.1 3.8 19 83-101 258-276 (480)
No 1
>PLN03202 protein argonaute; Provisional
Probab=100.00 E-value=3.3e-89 Score=786.94 Aligned_cols=396 Identities=42% Similarity=0.704 Sum_probs=333.2
Q ss_pred hHHHHHHHHhhhccccceeeccCCcccccC------CChhHHHHHHHHHHHHhhhcCCCceEEEEEeCCC-CCh-hHHHH
Q 008882 136 RANHFMVQLAERDIHHYDVFNPRPVIPISS------SNPNQIEKALVDVHNRTTQQGKQLQLLIIILPDV-SGS-YGRIK 207 (550)
Q Consensus 136 ~an~F~~~L~~~~~~~Gm~I~~~p~v~~~~------~~~~~ve~~L~~i~~~~~~~~~~~~lvlvIlp~~-~~~-Y~~IK 207 (550)
.++.|+..|.+.|..+||.|.++..+.... ...+.+++.+..+.+.. ...++|||||+|++ +.+ |+.||
T Consensus 495 ~~~~f~~~l~~~~~~~G~~i~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~qlv~vIlp~~~~~~~Y~~IK 571 (900)
T PLN03202 495 DIRHLVRDLIKCGEMKGINIEPPFDVFEENPQFRRAPPPVRVEKMFEQIQSKL---PGPPQFLLCILPERKNSDIYGPWK 571 (900)
T ss_pred hHHHHHHHHHHHHHHCCceeCCCccccccccccccccchHHHHHHHHHHHHhc---cCCCeEEEEEEcCCCCcchHHHHH
Confidence 578999999999999999997654321111 11234555555554432 24699999999974 455 99999
Q ss_pred HHhhhhcCceeeeecccccccCChhhHHHHHHHHHHhcCCcceeecccccccCCccCCCCeEEEEEeecCCCCCCCCCCc
Q 008882 208 RVCETELGIVSQCCQPRQASRLNIPYFENVALKINVKVGGRNTVLVDAVQKRIPLVTDRPTIIFGSDVTHPQPGEDSSPS 287 (550)
Q Consensus 208 ~~~~~~~GI~TQ~I~~~t~~k~~~~~~~Ni~lKINaKlGG~n~~l~~~~~~~lP~~~~~~tmIIGiDVsh~~~~~~~~pS 287 (550)
++||++.||+||||... +.++|++.||+||||+||||+||.+.......+|++.+.+|||||+||+|++++....||
T Consensus 572 ~~~~~~~gV~TQcv~~~---~~~~q~~~NIalKiN~KLGG~n~~~~~~~~~~i~~~~~~~tMivG~DVtHp~~g~~~~pS 648 (900)
T PLN03202 572 KKNLSEFGIVTQCIAPT---RVNDQYLTNVLLKINAKLGGLNSLLAIEHSPSIPLVSKVPTIILGMDVSHGSPGQSDVPS 648 (900)
T ss_pred HHHhhccCcccEEeCcc---ccchHHHHHHHHHHhhhhCCcceeecccccccCccccCCCeEEEEEEeecCCCCCCCCCc
Confidence 99999999999999654 357899999999999999999998865434457888778999999999999887544799
Q ss_pred EEEEEEeecCCCCcceeeEEEeccCchhhhhhhhcccCCCCCCCchhHHHHHHHHHHHHhc-CCCCceEEEEecCCCchh
Q 008882 288 IAAVVASMDWPEVTKYRGLVSAQAHNQEIIQDLYKSTQDPFGGSVHGGMIRELLIAFRRST-NLKPHRIIFYRDGVGEGQ 366 (550)
Q Consensus 288 i~avVaS~d~~~~~~y~s~~~~Q~~~~e~i~~l~~~~~~~~~~~~~~~~~~~~L~~f~~~~-~~~P~~IIiyRdGvsegq 366 (550)
|+|+|+|+||..+++|.+.+++|..++|+|++|+....+ ..+++||+++|..|++.+ +.+|++||||||||||||
T Consensus 649 iaa~VaS~d~~~~~~y~s~~~~Q~~~~E~i~~l~~~~~~----~~~~~m~~~~L~~~~~~~~~~~P~~IiiyRDGVseGQ 724 (900)
T PLN03202 649 IAAVVSSRQWPLISRYRASVRTQSPKVEMIDSLFKPVGD----KDDDGIIRELLLDFYTSSGKRKPEQIIIFRDGVSESQ 724 (900)
T ss_pred eEEEEeccCcccccceeeEEEecCCCceeeeehhccccc----cchHHHHHHHHHHHHHHcCCCCCceeEEEecCCCHHH
Confidence 999999999778999999999999999999987432111 235899999999999865 699999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCCEEEEEEeecccCccCcCCCCCCCCCCCCCCCCCeeeecccccCCCcccEEEeee
Q 008882 367 FSQVLLHEMSAIRQACASLEEGYAPPVTFVVVQKRHHTRLFPAEHNNRDLTDRSGNILPGTVVDTQICHPTQFDFYLNSH 446 (550)
Q Consensus 367 ~~~v~~~Ev~~i~~a~~~~~~~y~P~it~Ivv~Krh~~Rff~~~~~~~~~~~~~~N~~pGTvVd~~it~p~~~dFyL~Sh 446 (550)
|.+|+++|+++|++||.++..+|+|+||||||+||||+|||+.+ ...||+||||||++||+|..|||||+||
T Consensus 725 ~~~Vl~~Ev~~i~~a~~~~~~~~~Pkit~Ivv~Krh~tRff~~~--------~~~N~~pGTvVD~~it~p~~~dFyL~Sh 796 (900)
T PLN03202 725 FNQVLNIELDQIIEACKFLDESWSPKFTVIVAQKNHHTKFFQAG--------SPDNVPPGTVVDNKICHPRNNDFYMCAH 796 (900)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCcEEEEEEeccceeeeeccC--------CCCCCCCceEeccccccCCcceEEEecc
Confidence 99999999999999999998889999999999999999999863 3589999999999999999999999999
Q ss_pred cCCcccccceeEEEEecCCCCCHHHHHHHHHHhhhhcCccCCCccccchhhHHHHHHHHHhhhhccccCCCCCCCCCC-C
Q 008882 447 AGIRGTSRPIHYHVLYDENRFSADDLQVLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARYYIEDETSAGGSTGGSR-S 525 (550)
Q Consensus 447 ~~~qGTarPt~Y~Vl~d~~~~~~d~lq~lt~~Lc~~y~~~~~~vslPaPl~yA~~~a~R~r~~~~~~~~~~~~~~~~~-~ 525 (550)
.++|||+||+||+||+||+++++|+||+|||+|||+|+||+++||||+|+||||++|+|+|+|+..+..+.+++++++ .
T Consensus 797 ~~~qGTarPthY~Vl~de~~~~~d~lq~lty~lc~~y~~~t~~VsvpaP~yYAhlla~r~r~~l~~~~~~~~~~~~~~~~ 876 (900)
T PLN03202 797 AGMIGTTRPTHYHVLLDEIGFSADDLQELVHSLSYVYQRSTTAISVVAPVCYAHLAAAQMGQFMKFEDMSETSSSHGGIT 876 (900)
T ss_pred cccccCCcCceEEEEECCCCCCHHHHHHHHHHHhhhhcccCCceecchhHHHHHHHHHHhhhhccccCCccccccccccC
Confidence 999999999999999999999999999999999999999999999999999999999999999986543333222212 1
Q ss_pred CccccccCCCCccccccCCCCeeeC
Q 008882 526 TADRNLAIRPLPVIKDNVKDVMFYC 550 (550)
Q Consensus 526 ~~~~~~~~~~~~~~~~~~~~~m~~~ 550 (550)
+..+ .....+..||++|+++||||
T Consensus 877 ~~~~-~~~~~~~~~h~~~~~~Mfy~ 900 (900)
T PLN03202 877 SAGA-VPVPELPRLHENVASSMFFC 900 (900)
T ss_pred CCCc-cccccccccchhhcCCeeeC
Confidence 1121 12345778999999999999
No 2
>cd04657 Piwi_ago-like Piwi_ago-like: PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the 5' anchoring of the guide RNA and the other, the catalytic site for slicing.
Probab=100.00 E-value=4.4e-86 Score=710.18 Aligned_cols=348 Identities=55% Similarity=0.903 Sum_probs=309.9
Q ss_pred hHHHHHHHHhhhccccceeeccCCcccccCCChhHHHHHHHHHHHHhhhcCCCceEEEEEeCCCCCh-hHHHHHHhhhhc
Q 008882 136 RANHFMVQLAERDIHHYDVFNPRPVIPISSSNPNQIEKALVDVHNRTTQQGKQLQLLIIILPDVSGS-YGRIKRVCETEL 214 (550)
Q Consensus 136 ~an~F~~~L~~~~~~~Gm~I~~~p~v~~~~~~~~~ve~~L~~i~~~~~~~~~~~~lvlvIlp~~~~~-Y~~IK~~~~~~~ 214 (550)
.++.|+..|.+.+..+||.+. ... ....+.++..++.+.+.. ...++|||||+|+++.+ |..||++||.+.
T Consensus 76 ~~~~F~~~l~~~~~~~g~~~~--~~~---~~~~~~~~~~~~~~~~~~---~~~~~lv~~ilp~~~~~~Y~~iK~~~~~~~ 147 (426)
T cd04657 76 DLRNFVDQLVKTVIGAGINIT--TAI---ASVEGRVEELFAKLKQAK---GEGPQLVLVILPKKDSDIYGRIKRLADTEL 147 (426)
T ss_pred HHHHHHHHHHHHHHhcCCccc--ccc---cccchhHHHHHHHHHhhc---cCCCCEEEEEEcCCCcchHHHHHHHHhhcC
Confidence 478999999999999999886 111 112233333333333221 23699999999998756 999999999999
Q ss_pred Cceeeeeccccccc-CChhhHHHHHHHHHHhcCCcceeecccccccCCccCCCCeEEEEEeecCCCCCC-CCCCcEEEEE
Q 008882 215 GIVSQCCQPRQASR-LNIPYFENVALKINVKVGGRNTVLVDAVQKRIPLVTDRPTIIFGSDVTHPQPGE-DSSPSIAAVV 292 (550)
Q Consensus 215 GI~TQ~I~~~t~~k-~~~~~~~Ni~lKINaKlGG~n~~l~~~~~~~lP~~~~~~tmIIGiDVsh~~~~~-~~~pSi~avV 292 (550)
||+||||..+++.+ .+++++.||++|||+||||+||.|+.. ..+++...+|||||+||+|+++++ ...||++|+|
T Consensus 148 gI~TQci~~~~~~k~~~~~~~~NI~lKin~KlGG~n~~v~~~---~~~~~~~~~tmiiG~Dv~H~~~~~~~~~pSiaa~V 224 (426)
T cd04657 148 GIHTQCVLAKKVTKKGNPQYFANVALKINLKLGGINHSLEPD---IRPLLTKEPTMVLGADVTHPSPGDPAGAPSIAAVV 224 (426)
T ss_pred CcccEEEcccccccccchHHHHHHHHHHHHhcCCEeeecccc---cccccCCCCEEEEEEeeecCCCCCCCCCCcEEEEE
Confidence 99999999999876 789999999999999999999999764 123445689999999999998864 4679999999
Q ss_pred EeecCCCCcceeeEEEeccCchhhhhhhhcccCCCCCCCchhHHHHHHHHHHHHhcCCCCceEEEEecCCCchhHHHHHH
Q 008882 293 ASMDWPEVTKYRGLVSAQAHNQEIIQDLYKSTQDPFGGSVHGGMIRELLIAFRRSTNLKPHRIIFYRDGVGEGQFSQVLL 372 (550)
Q Consensus 293 aS~d~~~~~~y~s~~~~Q~~~~e~i~~l~~~~~~~~~~~~~~~~~~~~L~~f~~~~~~~P~~IIiyRdGvsegq~~~v~~ 372 (550)
+|+| .++++|.+.+++|+.++|++++| +++|+++|+.|++.|+.+|++|||||||||||||.+|++
T Consensus 225 as~d-~~~~~y~~~~~~q~~~~e~i~~l-------------~~~~~~~l~~~~~~~~~~P~~IiiyRDGvsegq~~~v~~ 290 (426)
T cd04657 225 ASVD-WHLAQYPASVRLQSHRQEIIDDL-------------ESMVRELLRAFKKATGKLPERIIYYRDGVSEGQFAQVLN 290 (426)
T ss_pred EecC-CcccccceEEEEeCCCcchHHHH-------------HHHHHHHHHHHHHHhCCCCceEEEEEcCcCHHHHHHHHH
Confidence 9999 89999999999999999999987 899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCCCEEEEEEeecccCccCcCCCCCCCCCCCCCCCCCeeeecccccCCCcccEEEeeecCCccc
Q 008882 373 HEMSAIRQACASLEEGYAPPVTFVVVQKRHHTRLFPAEHNNRDLTDRSGNILPGTVVDTQICHPTQFDFYLNSHAGIRGT 452 (550)
Q Consensus 373 ~Ev~~i~~a~~~~~~~y~P~it~Ivv~Krh~~Rff~~~~~~~~~~~~~~N~~pGTvVd~~it~p~~~dFyL~Sh~~~qGT 452 (550)
+|+++|++||.++..+|+|+||||+|+||||+|||+.+..+. .....||+||||||++||+|..+||||+||.++|||
T Consensus 291 ~E~~~i~~a~~~~~~~~~pkit~ivv~Krh~~Rff~~~~~~~--~~~~~N~~pGTvVd~~it~p~~~dFyL~sh~~~qGT 368 (426)
T cd04657 291 EELPAIRKACAKLYPGYKPKITFIVVQKRHHTRFFPTDEDDA--DGKNGNVPPGTVVDRGITHPREFDFYLCSHAGIQGT 368 (426)
T ss_pred HHHHHHHHHHHHhccCCCCcEEEEEeccceeeeEeccCcccc--cccCCCCCCCeEEecccCCCCceeEEEeccccCccC
Confidence 999999999999988899999999999999999999766421 123789999999999999999999999999999999
Q ss_pred ccceeEEEEecCCCCCHHHHHHHHHHhhhhcCccCCCccccchhhHHHHHHHHHhhhh
Q 008882 453 SRPIHYHVLYDENRFSADDLQVLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARYYI 510 (550)
Q Consensus 453 arPt~Y~Vl~d~~~~~~d~lq~lt~~Lc~~y~~~~~~vslPaPl~yA~~~a~R~r~~~ 510 (550)
||||||+||+||+++++|+||+|||.|||+|++|+++||+|+|+||||++|+|||+|+
T Consensus 369 arPt~Y~vl~d~~~~~~d~lq~lt~~lc~~y~~~~~~vsip~p~~yA~~la~r~r~~~ 426 (426)
T cd04657 369 ARPTHYHVLWDEIGFTADELQTLTYNLCYTYARCTRSVSIPPPAYYAHLAAARARCYL 426 (426)
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHHhhcccccCCCcccchHHHHHHHHHHHHhhcC
Confidence 9999999999999999999999999999999999999999999999999999999986
No 3
>KOG1041 consensus Translation initiation factor 2C (eIF-2C) and related proteins [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.8e-83 Score=731.32 Aligned_cols=393 Identities=42% Similarity=0.641 Sum_probs=336.4
Q ss_pred HHHHHHHhhhccccceeeccCCcccccCCChhHHHHHHHHHHHHhhhcCCCceEEEEEeCCCCCh-hHHHHHHhhhhcCc
Q 008882 138 NHFMVQLAERDIHHYDVFNPRPVIPISSSNPNQIEKALVDVHNRTTQQGKQLQLLIIILPDVSGS-YGRIKRVCETELGI 216 (550)
Q Consensus 138 n~F~~~L~~~~~~~Gm~I~~~p~v~~~~~~~~~ve~~L~~i~~~~~~~~~~~~lvlvIlp~~~~~-Y~~IK~~~~~~~GI 216 (550)
++|+.+|.+.|...||.|.. +. ........++..+..+....+. ..+++||+||++++..+ |..||++++...||
T Consensus 480 ~~f~~~L~~~c~~~Gm~i~~-~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~li~~I~~~k~~~vy~~lK~~e~t~~gi 555 (876)
T KOG1041|consen 480 KQFVDELIKICKDKGMEIKR-PR--KWAPTEESLEDMITEKSSMEKA-AAGVQLVFIILPEKNPDVHDELKYIEETVGGL 555 (876)
T ss_pred HHHHHHHHHHHHHcCccccc-cc--ccCcccchhHHHHHHHHhhhcc-CCCceEEEEEECCCCcchhHHHHHHHHHhcCc
Confidence 68999999999999999976 54 2222223444444433332212 35799999999999888 99999999999999
Q ss_pred eeeeecccccccCChhhHHHHHHHHHHhcCCcceeecccccccCCccCCCCeEEEEEeecCCCCCCCC--CCcEEEEEEe
Q 008882 217 VSQCCQPRQASRLNIPYFENVALKINVKVGGRNTVLVDAVQKRIPLVTDRPTIIFGSDVTHPQPGEDS--SPSIAAVVAS 294 (550)
Q Consensus 217 ~TQ~I~~~t~~k~~~~~~~Ni~lKINaKlGG~n~~l~~~~~~~lP~~~~~~tmIIGiDVsh~~~~~~~--~pSi~avVaS 294 (550)
+||||..+++.+..+||+.||++|||+||||+|+.|.++.....| +...+|||||+||+||+++... .|||||||+|
T Consensus 556 ~tQc~~~~~~~k~~~qtl~Nl~lKiN~KlGG~N~~l~~~~~~~~~-~~~~ptl~IG~dVsHp~~~~~~~~~PSiagvv~s 634 (876)
T KOG1041|consen 556 TTQCIRPTTAKKMSPQTLANLILKINVKLGGLNYVLVSPRSSRGP-KLDSPTLFIGFDVSHPAAGTSFDGNPSIVGVVYN 634 (876)
T ss_pred eeEEeecchhcccchHHHHHHHHHHhhccCceeeEEecccccCcc-cCCCCeEEEEEeeeCCCcCCCcCCCccEEEEEec
Confidence 999999999988889999999999999999999988765322223 3468999999999999987654 5999999999
Q ss_pred ecCCCCcceeeEEEeccCchhhhhhhhcccCCCCCCCchhHHHHHHHHHHHHhcCCCCceEEEEecCCCchhHHHHHHHH
Q 008882 295 MDWPEVTKYRGLVSAQAHNQEIIQDLYKSTQDPFGGSVHGGMIRELLIAFRRSTNLKPHRIIFYRDGVGEGQFSQVLLHE 374 (550)
Q Consensus 295 ~d~~~~~~y~s~~~~Q~~~~e~i~~l~~~~~~~~~~~~~~~~~~~~L~~f~~~~~~~P~~IIiyRdGvsegq~~~v~~~E 374 (550)
+|| +.++|.+.+++|.+++|.|+++ .+++.++|..|+++++.+|++|||||||||||||.+|+++|
T Consensus 635 ~~~-~~~~y~g~~~~Q~~r~e~i~~~-------------~~~~~~~l~~f~~~t~~~P~~IIiyRdGvSEgqf~~vl~~E 700 (876)
T KOG1041|consen 635 LDW-HPQKFAGFVRFQKSRQEVIQDL-------------GEMIRELLRSFRKSTRKLPDRIVIYRDGVSEGQFSMVLEEE 700 (876)
T ss_pred ccc-cchhhcceEEEecCChhhhcch-------------HHHHHHHHHHHHHhccCCCceEEEEecCCccchHHHHHHHH
Confidence 997 8899999999999999999875 89999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCCCCCEEEEEEeecccCccCcCCCCCCCCCCCCCCCCCeeeecccccCCCcccEEEeeecCCccccc
Q 008882 375 MSAIRQACASLEEGYAPPVTFVVVQKRHHTRLFPAEHNNRDLTDRSGNILPGTVVDTQICHPTQFDFYLNSHAGIRGTSR 454 (550)
Q Consensus 375 v~~i~~a~~~~~~~y~P~it~Ivv~Krh~~Rff~~~~~~~~~~~~~~N~~pGTvVd~~it~p~~~dFyL~Sh~~~qGTar 454 (550)
+.+|++||..+.++|.|+||||||+||||+|||+.+..+ +..+...|+||||+||+.||+|.++||||+||.++|||+|
T Consensus 701 ~~~ir~a~~~~~~~y~P~it~Iv~qKrHhtR~F~~~~~~-~~~~~~~Nv~pGT~VD~~It~p~~~dFyL~sh~g~qGTsr 779 (876)
T KOG1041|consen 701 LRAIKEACKKLQEGYNPKITVIVAQKRHHTRLFAAELSK-DGKAQSQNVPPGTVVDTTITSPGYFDFYLCSHHGLQGTSK 779 (876)
T ss_pred HHHHHHHHHHhCCCCCCceEEEEEEcccceeeecccCCC-CccCCccCCCCCCEecccccCCCcceEEEeccCccccccc
Confidence 999999999999999999999999999999999988752 3456788999999999999999999999999999999999
Q ss_pred ceeEEEEecCCCCCHHHHHHHHHHhhhhcCccCCCccccchhhHHHHHHHHHhhhhccccCCCCCC-CCCCCCccccccC
Q 008882 455 PIHYHVLYDENRFSADDLQVLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARYYIEDETSAGGST-GGSRSTADRNLAI 533 (550)
Q Consensus 455 Pt~Y~Vl~d~~~~~~d~lq~lt~~Lc~~y~~~~~~vslPaPl~yA~~~a~R~r~~~~~~~~~~~~~-~~~~~~~~~~~~~ 533 (550)
|+||+|||||++|++|+||+|||+|||+|++|++|||||+|+||||++|+|||++.+....+.+.+ +..+.........
T Consensus 780 p~~Y~VL~dd~~~~~d~lq~lt~~Lc~~~qr~t~pvSiP~P~YyA~~~A~Rgr~~~~~~~~~~~~~~~~~s~~~~~~~~~ 859 (876)
T KOG1041|consen 780 PTHYTVLYDDIGFSKDELQKLTYALCFTHQRCTKPVSLPAPLYYAHEVAKRGRNNYKEHLREKNSSAIYQSIVDLDALNS 859 (876)
T ss_pred CceEEEEeCCCCCCHHHHHHHHHHHhhheeeecCCCcCCchHHHHHHHHHHhhhhhhhhccccCCCcccccccccchhhh
Confidence 999999999999999999999999999999999999999999999999999999843222222221 1111112222224
Q ss_pred CCCccccccCCCCeeeC
Q 008882 534 RPLPVIKDNVKDVMFYC 550 (550)
Q Consensus 534 ~~~~~~~~~~~~~m~~~ 550 (550)
....++|.++.++||||
T Consensus 860 ~~~~~~~~~~~~~~f~a 876 (876)
T KOG1041|consen 860 EEGYKEKAGLFGTRFNA 876 (876)
T ss_pred hhHHHhhhcccceEEeC
Confidence 56889999999999998
No 4
>cd04658 Piwi_piwi-like_Euk Piwi_piwi-like_Euk: PIWI domain, Piwi-like subfamily found in eukaryotes. This domain is found in Piwi and closely related proteins, where it is believed to perform a crucial role in germline cells, via RNA silencing. RNA silencing refers to a group of related gene-silencing mechanisms mediated by short RNA molecules, including siRNAs, miRNAs, and heterochromatin-related guide RNAs. The mechanism in Piwi is believed to be similar to that in Argonaute, the central component of the RNA-induced silencing complex (RISC). The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the 5' anchoring of the guide RNA and the other, the catalytic site for slicing.
Probab=100.00 E-value=2e-78 Score=655.80 Aligned_cols=338 Identities=33% Similarity=0.502 Sum_probs=305.8
Q ss_pred hHHHHHHHHhhhccccceeeccCCcccccCCChhHHHHHHHHHHHHhhhcCCCceEEEEEeCCCCCh-hHHHHHHhhhhc
Q 008882 136 RANHFMVQLAERDIHHYDVFNPRPVIPISSSNPNQIEKALVDVHNRTTQQGKQLQLLIIILPDVSGS-YGRIKRVCETEL 214 (550)
Q Consensus 136 ~an~F~~~L~~~~~~~Gm~I~~~p~v~~~~~~~~~ve~~L~~i~~~~~~~~~~~~lvlvIlp~~~~~-Y~~IK~~~~~~~ 214 (550)
.++.|+..|.+.++.+||.+.++..+.+...+.+++++.|.+.+. .+++|+|||+|++..+ |..||++++.+.
T Consensus 106 ~~~~f~~~l~~~~~~~G~~~~~P~~~~~~~~~~~~~~~~l~~~~~------~~~~lvvvilp~~~~~~Y~~iK~~~~~~~ 179 (448)
T cd04658 106 EAESFLQTLKQVAGPMGIQISPPKIIKVKDDRIETYIRALKDAFR------SDPQLVVIILPGNKKDLYDAIKKFCCVEC 179 (448)
T ss_pred HHHHHHHHHHHHHHHcCCccCCCeEEEeCCCCHHHHHHHHHHhhc------CCCcEEEEEECCCCchhHHHHHHHhhccc
Confidence 478999999999999999998766665544444556666665543 4799999999998756 999999999999
Q ss_pred CceeeeecccccccC--ChhhHHHHHHHHHHhcCCcceeecccccccCCccCCCCeEEEEEeecCCCCCCCCCCcEEEEE
Q 008882 215 GIVSQCCQPRQASRL--NIPYFENVALKINVKVGGRNTVLVDAVQKRIPLVTDRPTIIFGSDVTHPQPGEDSSPSIAAVV 292 (550)
Q Consensus 215 GI~TQ~I~~~t~~k~--~~~~~~Ni~lKINaKlGG~n~~l~~~~~~~lP~~~~~~tmIIGiDVsh~~~~~~~~pSi~avV 292 (550)
||+||||..+++.+. ..+++.||++|||+||||+||.+... .+...+|||||+||+|+.+. ..+|++|+|
T Consensus 180 gI~tQ~i~~~t~~~~~~~~~~~~ni~lkinaKlGG~~w~l~~~------~~~~~~tmiiGidv~h~~~~--~~~Si~a~v 251 (448)
T cd04658 180 PVPSQVITSRTLKKKKNLRSIASKIALQINAKLGGIPWTVEIP------PFILKNTMIVGIDVYHDTIT--KKKSVVGFV 251 (448)
T ss_pred CcCCEEEehhhcccccccHHHHHHHHHHHHHHhCCcceEeccC------CCCCCCeEEEEEeeecCCCC--CCCcEEEEE
Confidence 999999999998764 45789999999999999999998753 12357899999999999863 469999999
Q ss_pred EeecCCCCcceeeEEEeccCchhh-hhhhhcccCCCCCCCchhHHHHHHHHHHHHhcCCCCceEEEEecCCCchhHHHHH
Q 008882 293 ASMDWPEVTKYRGLVSAQAHNQEI-IQDLYKSTQDPFGGSVHGGMIRELLIAFRRSTNLKPHRIIFYRDGVGEGQFSQVL 371 (550)
Q Consensus 293 aS~d~~~~~~y~s~~~~Q~~~~e~-i~~l~~~~~~~~~~~~~~~~~~~~L~~f~~~~~~~P~~IIiyRdGvsegq~~~v~ 371 (550)
+|+| .++++|++.+..|..++|+ +++| +++|+++|+.|++.|+.+|++|||||||||||||.+|+
T Consensus 252 as~~-~~~~~~~~~~~~q~~~~e~~~~~l-------------~~~~~~~l~~y~~~~~~~P~~IiiyRdGvsegq~~~v~ 317 (448)
T cd04658 252 ASLN-KSITKWFSKYISQVRGQEEIIDSL-------------GKSMKKALKAYKKENKKLPSRIIIYRDGVGDGQLKKVK 317 (448)
T ss_pred EEcC-CCCceEeeEEEEeCCCceeeHHHH-------------HHHHHHHHHHHHHHhCCCCceEEEEecCCCHHHHHHHH
Confidence 9999 9999999999999998887 7777 89999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCCCEEEEEEeecccCccCcCCCCCCCCCCCCCCCCCeeeecccccCCCcccEEEeeecCCcc
Q 008882 372 LHEMSAIRQACASLEEGYAPPVTFVVVQKRHHTRLFPAEHNNRDLTDRSGNILPGTVVDTQICHPTQFDFYLNSHAGIRG 451 (550)
Q Consensus 372 ~~Ev~~i~~a~~~~~~~y~P~it~Ivv~Krh~~Rff~~~~~~~~~~~~~~N~~pGTvVd~~it~p~~~dFyL~Sh~~~qG 451 (550)
+.|+++|++||.++...|+|+||||+|+||||+|||+.+.. ...|++||||||++||+|..+||||+||.++||
T Consensus 318 ~~E~~~i~~a~~~~~~~~~p~it~ivv~Kr~~~Rff~~~~~------~~~N~~~GTvVd~~it~p~~~dFyL~s~~~~qG 391 (448)
T cd04658 318 EYEVPQIKKAIKQYSENYSPKLAYIVVNKRINTRFFNQGGN------NFSNPPPGTVVDSEITKPEWYDFFLVSQSVRQG 391 (448)
T ss_pred HHHHHHHHHHHHHhCCCCCCCEEEEEEeccccceeecCCCC------CCCCCCCCcEecccccCCCcccEEEeccccCcc
Confidence 99999999999998888999999999999999999987642 358999999999999999999999999999999
Q ss_pred cccceeEEEEecCCCCCHHHHHHHHHHhhhhcCccCCCccccchhhHHHHHHHHHh
Q 008882 452 TSRPIHYHVLYDENRFSADDLQVLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRAR 507 (550)
Q Consensus 452 TarPt~Y~Vl~d~~~~~~d~lq~lt~~Lc~~y~~~~~~vslPaPl~yA~~~a~R~r 507 (550)
||||+||+||+||+.+++|+||+|||+|||+|++|+++||||+|+||||++|+|+.
T Consensus 392 tarP~~Y~Vl~d~~~~~~~~lq~lt~~lc~~y~~~~~~vs~P~p~~yA~~~a~~~g 447 (448)
T cd04658 392 TVTPTHYNVLYDTTGLKPDHLQRLTYKLCHLYYNWSGSIRVPAPCQYAHKLAFLVG 447 (448)
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHHhhhcccCCCCCCccCHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999875
No 5
>cd02826 Piwi-like Piwi-like: PIWI domain. Domain found in proteins involved in RNA silencing. RNA silencing refers to a group of related gene-silencing mechanisms mediated by short RNA molecules, including siRNAs, miRNAs, and heterochromatin-related guide RNAs. The central component of the RNA-induced silencing complex (RISC) and related complexes is Argonaute. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the 5' anchoring of the guide RNA and the other, the catalytic site for slicing. This domain is also found in closely related proteins, including the Piwi subfamily, where it is believed to perform a crucial role in germline cells, via a similar mechanism.
Probab=100.00 E-value=1.7e-77 Score=638.02 Aligned_cols=338 Identities=33% Similarity=0.510 Sum_probs=295.4
Q ss_pred HHHHHHHHhhhccccceeecc-CCcccccCC--ChhHHHHHHHHHHHHhhhcCCCceEEEEEeCCCCCh-hHHHHHHhhh
Q 008882 137 ANHFMVQLAERDIHHYDVFNP-RPVIPISSS--NPNQIEKALVDVHNRTTQQGKQLQLLIIILPDVSGS-YGRIKRVCET 212 (550)
Q Consensus 137 an~F~~~L~~~~~~~Gm~I~~-~p~v~~~~~--~~~~ve~~L~~i~~~~~~~~~~~~lvlvIlp~~~~~-Y~~IK~~~~~ 212 (550)
.++|+..|.+.++.+||.+.+ ++...+... +.+++.+.|++..+ .+++|||||+|+++.+ |..||++++.
T Consensus 48 ~~~f~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~lv~~ilp~~~~~~Y~~iK~~~~~ 121 (393)
T cd02826 48 VDDLVKRLADACRQLGMKIKEIPIVSWIEDLNNSFKDLKSVFKNAIK------AGVQLVIFILKEKKPPLHDEIKRLEAK 121 (393)
T ss_pred HHHHHHHHHHHHHhCCCccCCCCCcceeecccccHHHHHHHHHHHhh------cCCCEEEEEEcCCCccHHHHHHHHHhc
Confidence 458999999999999999987 443323221 23445555554443 3799999999998766 9999999887
Q ss_pred hcCceeeeeccccccc--CChhhHHHHHHHHHHhcCCcceeecccccccCCccCCCCeEEEEEeecCCCCC-CCCCCcEE
Q 008882 213 ELGIVSQCCQPRQASR--LNIPYFENVALKINVKVGGRNTVLVDAVQKRIPLVTDRPTIIFGSDVTHPQPG-EDSSPSIA 289 (550)
Q Consensus 213 ~~GI~TQ~I~~~t~~k--~~~~~~~Ni~lKINaKlGG~n~~l~~~~~~~lP~~~~~~tmIIGiDVsh~~~~-~~~~pSi~ 289 (550)
. ||+||||..+++.+ .++++++||++|||+||||+||.|+.. .+...+|||||+||+|++++ ....+|++
T Consensus 122 ~-gI~tQ~i~~~t~~~~~~~~~~~~Ni~lkin~KlGG~~~~l~~~------~~~~~~tmiiGiDv~h~~~~~~~~~~si~ 194 (393)
T cd02826 122 S-DIPSQVIQLKTAKKMRRLKQTLDNLLRKVNSKLGGINYILDSP------VKLFKSDIFIGFDVSHPDRRTVNGGPSAV 194 (393)
T ss_pred c-CCceEEEehhhhccccccHHHHHHHHHHHhhhhCCeeeEeccC------CCCCCCEEEEEEEeeCCCCCCCCCCCcEE
Confidence 7 99999999999876 678999999999999999999999753 12347899999999999875 34579999
Q ss_pred EEEEeecCCCCcceeeEEEeccCchhhhhhhhcccCCCCCCCchhHHHHHHHHHHHHhcCC-CCceEEEEecCCCchhHH
Q 008882 290 AVVASMDWPEVTKYRGLVSAQAHNQEIIQDLYKSTQDPFGGSVHGGMIRELLIAFRRSTNL-KPHRIIFYRDGVGEGQFS 368 (550)
Q Consensus 290 avVaS~d~~~~~~y~s~~~~Q~~~~e~i~~l~~~~~~~~~~~~~~~~~~~~L~~f~~~~~~-~P~~IIiyRdGvsegq~~ 368 (550)
|+|+|+| .. +.+...++.|..++|+++++ +++|+++|+.|+++++. +|++|||||||||||||+
T Consensus 195 ~~vas~~-~~-~~~g~~~~~~~~~~~~~~~l-------------~~~~~~~L~~y~~~~~~~~P~~IiiyRDGvsegq~~ 259 (393)
T cd02826 195 GFAANLS-NH-TFLGGFLYVQPSREVKLQDL-------------GEVIKKCLDGFKKSTGEGLPEKIVIYRDGVSEGEFK 259 (393)
T ss_pred EEEeecC-Cc-cccceEEEEecCccchHHHH-------------HHHHHHHHHHHHHHcCCCCcceeEEEecCCCHHHHH
Confidence 9999999 54 23334567787888888877 89999999999999999 999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCCEEEEEEeecccCccCcCCCCCCCCCCCCCCCCCeeeecccccCCCcccEEEeeecC
Q 008882 369 QVLLHEMSAIRQACASLEEGYAPPVTFVVVQKRHHTRLFPAEHNNRDLTDRSGNILPGTVVDTQICHPTQFDFYLNSHAG 448 (550)
Q Consensus 369 ~v~~~Ev~~i~~a~~~~~~~y~P~it~Ivv~Krh~~Rff~~~~~~~~~~~~~~N~~pGTvVd~~it~p~~~dFyL~Sh~~ 448 (550)
.|+++|+++|++||. +..+|+|+||||+|+||||+|||+.+++ ....||+||||||.+||+|..+||||+||.+
T Consensus 260 ~v~~~e~~~i~~a~~-~~~~~~p~it~Ivv~Krh~~Rff~~~~~-----~~~~Np~~GTvVd~~it~p~~~dFyL~sh~~ 333 (393)
T cd02826 260 RVKEEVEEIIKEACE-IEESYRPKLVIIVVQKRHNTRFFPNEKN-----GGVQNPEPGTVVDHTITSPGLSEFYLASHVA 333 (393)
T ss_pred HHHHHHHHHHHHHHh-hCCCCCCCEEEEEEeccccceeccCCCC-----CCCCCCCCceEeccccccCCcceEEEecccc
Confidence 999999999999999 7778999999999999999999997653 1348999999999999999999999999999
Q ss_pred CcccccceeEEEEecCCCCCHHHHHHHHHHhhhhcCccCCCccccchhhHHHHHHHHHhh
Q 008882 449 IRGTSRPIHYHVLYDENRFSADDLQVLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARY 508 (550)
Q Consensus 449 ~qGTarPt~Y~Vl~d~~~~~~d~lq~lt~~Lc~~y~~~~~~vslPaPl~yA~~~a~R~r~ 508 (550)
+|||+||+||+|++||++++.|+||+|||.|||+|+||++++|||+|+||||++|+|+|+
T Consensus 334 ~qGT~rP~~Y~Vl~d~~~~~~d~lq~lty~lc~~y~~~~~~vslP~p~~yA~~~a~r~rn 393 (393)
T cd02826 334 RQGTVKPTKYTVVFNDKNWSLNELEILTYILCLTHQNVYSPISLPAPLYYAHKLAKRGRN 393 (393)
T ss_pred CcCCCCCceEEEEECCCCCCHHHHHHHHHHHhhcccccCCCcccChHHHHHHHHHHhhcC
Confidence 999999999999999999999999999999999999999999999999999999999985
No 6
>PF02171 Piwi: Piwi domain; InterPro: IPR003165 This domain is found in the stem cell self-renewal protein Piwi and its relatives in Drosophila melanogaster []. It has been found in the C-terminal of a number of proteins which also contain the PAZ domain (IPR003100 from INTERPRO) in their central region, for example the Argonaute proteins. Several of these proteins have been implicated in the development and maintenance of stem cells through the RNA-mediated gene-quelling mechanisms associated with the protein DICER. ; GO: 0005515 protein binding; PDB: 4F1N_B 3LUH_B 4EI1_A 3QX8_A 3LUC_C 3LUJ_B 3LUD_B 3QX9_A 3LUG_B 3LUK_B ....
Probab=100.00 E-value=2.9e-73 Score=585.51 Aligned_cols=298 Identities=46% Similarity=0.759 Sum_probs=266.2
Q ss_pred EEEEEeCCCCCh-hHHHHHHhhhhcCceeeeecccccccC--ChhhHHHHHHHHHHhcCCcceeecccccccCCccCCCC
Q 008882 191 LLIIILPDVSGS-YGRIKRVCETELGIVSQCCQPRQASRL--NIPYFENVALKINVKVGGRNTVLVDAVQKRIPLVTDRP 267 (550)
Q Consensus 191 lvlvIlp~~~~~-Y~~IK~~~~~~~GI~TQ~I~~~t~~k~--~~~~~~Ni~lKINaKlGG~n~~l~~~~~~~lP~~~~~~ 267 (550)
+||||+|+++.+ |..||++++.+.||+||||..+++.+. ..+++.||++|||+||||.|+.+.+. +..+++ .+
T Consensus 1 ~i~~ii~~~~~~~Y~~iKk~~~~~~gi~tQ~i~~~~~~~~~~~~~~~~ni~lkinaKlGG~n~~~~~~-~~~~~~---~~ 76 (302)
T PF02171_consen 1 LIVVIIPDKNSDNYHAIKKYLERKLGIPTQCILSKTLRKKNKSKQILNNIALKINAKLGGINPWLLDS-PPSIDL---KN 76 (302)
T ss_dssp -EEEEESSSSHHHHHHHHHHHHTTTTCEEEEEEHHHHHTSTHHHHHHHHHHHHHHHHTTTBSEEECSC-SSGSSE---SE
T ss_pred CEEEEEeCCChhHHHHHHHHHccCCCcccEEEccCcccccchHHHHHHHHHHHHHHhCCCeeeeeccc-cccccc---Cc
Confidence 588999997766 999999999999999999999999877 45899999999999999996444332 111111 68
Q ss_pred eEEEEEeecCCCCCCCCCCcEEEEEEeecCCCCcceeeEEEeccCchhhhhhhhcccCCCCCCCchhHHHHHHHHHHHHh
Q 008882 268 TIIFGSDVTHPQPGEDSSPSIAAVVASMDWPEVTKYRGLVSAQAHNQEIIQDLYKSTQDPFGGSVHGGMIRELLIAFRRS 347 (550)
Q Consensus 268 tmIIGiDVsh~~~~~~~~pSi~avVaS~d~~~~~~y~s~~~~Q~~~~e~i~~l~~~~~~~~~~~~~~~~~~~~L~~f~~~ 347 (550)
+||||+||+|+.......+|++|+|+|+| ++.++|.+.+..|..++|+++++ +++|+++|+.|++.
T Consensus 77 ~miIGidv~h~~~~~~~~~sv~g~~~s~~-~~~~~~~~~~~~~~~~~e~~~~l-------------~~~~~~~L~~~~~~ 142 (302)
T PF02171_consen 77 TMIIGIDVSHPSPGSDKNPSVVGFVASFD-SDGSKYFSSVRFQDSGQEIIDNL-------------EEIIKEALKEFKKN 142 (302)
T ss_dssp EEEEEEEEEEESSTCTCSCEEEEEEEEES-TTTCEEEEEEEEECTTCCCHHHH-------------HHHHHHHHHHHHHT
T ss_pred eEEEEEEEEecCcccCCcceeeEEEEecc-CccccccceeEEeccchhhhcch-------------hhHHHHHHHHHHHH
Confidence 99999999999876556799999999999 99999999999999999999887 89999999999999
Q ss_pred cCC-CCceEEEEecCCCchhHHHHHHHHHHHHHHHHHhhcCCCCCCEEEEEEeecccCccCcCCCCCCCCCCCCCCCCCe
Q 008882 348 TNL-KPHRIIFYRDGVGEGQFSQVLLHEMSAIRQACASLEEGYAPPVTFVVVQKRHHTRLFPAEHNNRDLTDRSGNILPG 426 (550)
Q Consensus 348 ~~~-~P~~IIiyRdGvsegq~~~v~~~Ev~~i~~a~~~~~~~y~P~it~Ivv~Krh~~Rff~~~~~~~~~~~~~~N~~pG 426 (550)
|+. +|++|||||||||||||++|+++|+++|++||.++..+|.|+|+||+|+|+|++|||+.+.. +...||+||
T Consensus 143 ~~~~~P~~IiiyRdGvse~~~~~v~~~Ei~~i~~a~~~~~~~~~p~~~~i~v~K~~~~R~f~~~~~-----~~~~N~~~G 217 (302)
T PF02171_consen 143 NGKWLPERIIIYRDGVSEGQFKKVLEEEIEAIKEAIKELGEDYNPKITYIVVQKRHNTRFFPQNGR-----DGLQNPPPG 217 (302)
T ss_dssp TTT-TTSEEEEEEES--GGGHHHHHHHHHHHHHHHHHHHTHTTCTEEEEEEEESSSS--EEESSSE-----ETTTEECTT
T ss_pred cCCCCCceEEEEEcccCHHhhcccHHHHHHHHHHHHhhcccCCCCcEEEEEeeccccceEeecccc-----cccCCCCCC
Confidence 998 99999999999999999999999999999999999889999999999999999999998764 257899999
Q ss_pred eeecccccCCCcccEEEeeecCCcccccceeEEEEecCCCCCHHHHHHHHHHhhhhcCccCCCccccchhhHHHHHHHHH
Q 008882 427 TVVDTQICHPTQFDFYLNSHAGIRGTSRPIHYHVLYDENRFSADDLQVLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRA 506 (550)
Q Consensus 427 TvVd~~it~p~~~dFyL~Sh~~~qGTarPt~Y~Vl~d~~~~~~d~lq~lt~~Lc~~y~~~~~~vslPaPl~yA~~~a~R~ 506 (550)
||||+.++++..+||||+||.+++||+||+||+|||||..++.|+||+|||.|||+|++|++++|||+|+||||++|+|+
T Consensus 218 tvvd~~i~~~~~~~f~l~s~~~~~Gt~~P~~y~vl~~~~~~~~~~l~~~t~~L~~~~~~~~~~~~lP~p~~yA~~~a~~~ 297 (302)
T PF02171_consen 218 TVVDTGITSPNYFEFYLVSHTARQGTARPTHYTVLYDDSNLSMDELQQLTYSLCHLYQNSTGPISLPAPLYYAHKLAKRG 297 (302)
T ss_dssp EEESSEEEECSBEEEEEETSCCCSSSEEEEEEEEEEESSCSCHHHHHHHHHHHTTGGTTSSS--SS-HHHHHHHHHHHHH
T ss_pred eeeccceeeecceeeeeeecccccccccccEEEEecCcccccHHHHHHHHHHHHHHhcccCCCCccCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhc
Q 008882 507 RYYIE 511 (550)
Q Consensus 507 r~~~~ 511 (550)
++++.
T Consensus 298 ~~~~~ 302 (302)
T PF02171_consen 298 RNNLK 302 (302)
T ss_dssp HHHC-
T ss_pred HhhcC
Confidence 99863
No 7
>KOG1042 consensus Germ-line stem cell division protein Hiwi/Piwi; negative developmental regulator [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=2.6e-71 Score=584.59 Aligned_cols=340 Identities=31% Similarity=0.476 Sum_probs=311.8
Q ss_pred hHHHHHHHHhhhccccceeeccCCcccccCCChhHHHHHHHHHHHHhhhcCCCceEEEEEeCCCCCh-hHHHHHHhhhhc
Q 008882 136 RANHFMVQLAERDIHHYDVFNPRPVIPISSSNPNQIEKALVDVHNRTTQQGKQLQLLIIILPDVSGS-YGRIKRVCETEL 214 (550)
Q Consensus 136 ~an~F~~~L~~~~~~~Gm~I~~~p~v~~~~~~~~~ve~~L~~i~~~~~~~~~~~~lvlvIlp~~~~~-Y~~IK~~~~~~~ 214 (550)
.++.|+.+|.+.+..+||.|.++..+.+.+.++..+.++++.... .++++|+||+++..++ |+.|||+++++.
T Consensus 486 ~a~~fi~~l~r~a~~mgm~i~~P~~v~i~ddr~~tYvraiqq~v~------~D~qmvvcil~~~nk~~Y~sIKK~~cvd~ 559 (845)
T KOG1042|consen 486 EAQEFINMLRRVASSMGMQIREPICVEIKDDRPGTYVRAIQQVVG------ADIQMVVCILPSDNKTRYDSIKKYLCVDC 559 (845)
T ss_pred HHHHHHHHHHHhccccceecCCceEEEeCCCChHHHHHHHHHhcc------CCceEEEEEecCCchhhHHHHHhheeccC
Confidence 589999999999999999999988888887777887777776554 4799999999999888 999999999999
Q ss_pred CceeeeecccccccCC--hhhHHHHHHHHHHhcCCcceeecccccccCCccCCCCeEEEEEeecCCCCCCCCCCcEEEEE
Q 008882 215 GIVSQCCQPRQASRLN--IPYFENVALKINVKVGGRNTVLVDAVQKRIPLVTDRPTIIFGSDVTHPQPGEDSSPSIAAVV 292 (550)
Q Consensus 215 GI~TQ~I~~~t~~k~~--~~~~~Ni~lKINaKlGG~n~~l~~~~~~~lP~~~~~~tmIIGiDVsh~~~~~~~~pSi~avV 292 (550)
.||||||..+|+.+.. ..+.++|++|||+||||.+|.|+ ||+ ..+||||+||+|.+. .+..|++|+|
T Consensus 560 pvPsQ~V~lrTl~~~~~lmSIAtKI~lQmnCKlGg~lW~V~------IPL---k~lMiVG~Dv~hd~~--~k~rsvga~V 628 (845)
T KOG1042|consen 560 PVPSQCVNLRTLAKRSKLMSIATKIALQMNCKLGGELWKVE------IPL---KGLMIVGFDVYHDPT--LKGRSVGAFV 628 (845)
T ss_pred CCccceEEEEeecCcchhHHHHHHHHHHHhhhhcCcceEEe------eec---ccceEEEEEeecCcc--ccCceEEEEE
Confidence 9999999999987644 35678999999999999999886 554 579999999999875 3578999999
Q ss_pred EeecCCCCcceeeEEEeccCchhhhhhhhcccCCCCCCCchhHHHHHHHHHHHHhcCCCCceEEEEecCCCchhHHHHHH
Q 008882 293 ASMDWPEVTKYRGLVSAQAHNQEIIQDLYKSTQDPFGGSVHGGMIRELLIAFRRSTNLKPHRIIFYRDGVGEGQFSQVLL 372 (550)
Q Consensus 293 aS~d~~~~~~y~s~~~~Q~~~~e~i~~l~~~~~~~~~~~~~~~~~~~~L~~f~~~~~~~P~~IIiyRdGvsegq~~~v~~ 372 (550)
||+| ..+++|+|.+.+|...+|+.+.| .-++..+|++|++.|..+|++||+|||||++||++++.+
T Consensus 629 As~n-~~~tr~fS~v~~~~~~qel~d~L-------------~~~~~~ALr~y~~~n~~LPsRIi~YRDGVgDGQLk~l~n 694 (845)
T KOG1042|consen 629 ASMN-NDFTRWFSRVIEQENGQELADNL-------------KVFLAKALRQYYEVNRTLPSRIIVYRDGVGDGQLKTLVN 694 (845)
T ss_pred Eeec-cchhhhhhheecccCHHHHHHHH-------------HHHHHHHHHHHHHhcccCCceEEEEecCCCCcccceeee
Confidence 9999 99999999999999999999887 789999999999999999999999999999999999999
Q ss_pred HHHH----HHHHHHHhhcCCCCCCEEEEEEeecccCccCcCCCCCCCCCCCCCCCCCeeeecccccCCCcccEEEeeecC
Q 008882 373 HEMS----AIRQACASLEEGYAPPVTFVVVQKRHHTRLFPAEHNNRDLTDRSGNILPGTVVDTQICHPTQFDFYLNSHAG 448 (550)
Q Consensus 373 ~Ev~----~i~~a~~~~~~~y~P~it~Ivv~Krh~~Rff~~~~~~~~~~~~~~N~~pGTvVd~~it~p~~~dFyL~Sh~~ 448 (550)
+||+ ++.+.+.++..+|+|+++||||+|+.++|||..... +.+||+||||||++||.|..+||||+||.+
T Consensus 695 ~EV~~~~dql~~~~a~~~~~~~~rl~~iVV~KrvntR~f~~~~~------~~~NP~PGTVVD~~iT~pEryDFyLvsQ~V 768 (845)
T KOG1042|consen 695 YEVPLVCDQLLDCYAELSNKEKPRLAVIVVTKRVNTRFFLQGSS------NAQNPPPGTVVDDTITRPERYDFYLVSQAV 768 (845)
T ss_pred eccchHHHHHHHHHHHhcCCCCCcEEEEEEEeeccHHHHhhCCc------cccCCCCCceecceecccceeeeEeehhhh
Confidence 9999 666777777778999999999999999999987652 579999999999999999999999999999
Q ss_pred CcccccceeEEEEecCCCCCHHHHHHHHHHhhhhcCccCCCccccchhhHHHHHHHHHhhhhcc
Q 008882 449 IRGTSRPIHYHVLYDENRFSADDLQVLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARYYIED 512 (550)
Q Consensus 449 ~qGTarPt~Y~Vl~d~~~~~~d~lq~lt~~Lc~~y~~~~~~vslPaPl~yA~~~a~R~r~~~~~ 512 (550)
.|||..||+|.|+||+.+++.|.+|+|||.|||+|+||.++|++|||++||||||..+..-++.
T Consensus 769 rqGtvsPTsYnvi~d~~gL~PDkmQrLtfKlCHlYyNW~GtiRVPApCqYAHKLAfLv~qslH~ 832 (845)
T KOG1042|consen 769 RQGTVSPTSYNVIYDDMGLSPDKMQRLTFKLCHLYYNWPGTIRVPAPCQYAHKLAFLVAQSLHR 832 (845)
T ss_pred hcCCcCCceEEEEecCCCCCHHHHHHHHHHHhheeecCCcceeccchhHHHHHHHHHHHhhhhh
Confidence 9999999999999999999999999999999999999999999999999999999988876654
No 8
>cd04659 Piwi_piwi-like_ProArk Piwi_piwi-like_ProArk: PIWI domain, Piwi-like subfamily found in Archaea and Bacteria. RNA silencing refers to a group of related gene-silencing mechanisms mediated by short RNA molecules, including siRNAs, miRNAs, and heterochromatin-related guide RNAs. The central component of the RNA-induced silencing complex (RISC) and related complexes is Argonaute. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the 5' anchoring of the guide RNA and the other, the catalytic site for slicing. This domain is also found in closely related proteins, including the Piwi subfamily, where it is believed to perform a crucial role in germline cells, via a similar mechanism.
Probab=100.00 E-value=1.8e-46 Score=401.49 Aligned_cols=291 Identities=20% Similarity=0.206 Sum_probs=230.1
Q ss_pred hhHHHHHHHHHHHHhhhcCCCceEEEEEeCCCC------Ch-hHHHHHHhhhhcCceeeeecccccccC--ChhhHHHHH
Q 008882 168 PNQIEKALVDVHNRTTQQGKQLQLLIIILPDVS------GS-YGRIKRVCETELGIVSQCCQPRQASRL--NIPYFENVA 238 (550)
Q Consensus 168 ~~~ve~~L~~i~~~~~~~~~~~~lvlvIlp~~~------~~-Y~~IK~~~~~~~GI~TQ~I~~~t~~k~--~~~~~~Ni~ 238 (550)
...+.++++....+. ...++++||++|++. .+ |..||+++ ...||+||||..+|+.+. ..+++.||+
T Consensus 93 ~~~~~~a~~~~~~~~---~~~~~~~lvilP~~~~~~~~~~~~Y~~iK~~~-~~~giptQ~v~~~tl~~~~~~~~~~~nia 168 (404)
T cd04659 93 AEAIIEAVDLALSES---SQGVDVVIVVLPEDLKELPEEFDLYDRLKAKL-LRLGIPTQFVREDTLKNRQDLAYVAWNLA 168 (404)
T ss_pred hHHHHHHHHHHHHhh---cCCCCEEEEEeCHHHhhcccccCHHHHHHHHH-HhcCCceEEeeHHHcCccccHHHHHHHHH
Confidence 455666666666543 247899999999985 44 99999886 689999999999999754 567899999
Q ss_pred HHHHHhcCCcceeecccccccCCccCCCCeEEEEEeecCCCCCCCCCCcEEEEEEeecCCCCcceeeEEEeccCchhhhh
Q 008882 239 LKINVKVGGRNTVLVDAVQKRIPLVTDRPTIIFGSDVTHPQPGEDSSPSIAAVVASMDWPEVTKYRGLVSAQAHNQEIIQ 318 (550)
Q Consensus 239 lKINaKlGG~n~~l~~~~~~~lP~~~~~~tmIIGiDVsh~~~~~~~~pSi~avVaS~d~~~~~~y~s~~~~Q~~~~e~i~ 318 (550)
+|||+|+||+||+|... ...++||||+||+|+... ...+++++..+| .+...+ ...+...++.+.
T Consensus 169 l~i~aKlGG~pW~l~~~--------~~~~~~iIGidv~~~~~~---~~~~~~~a~vf~-~~g~g~---~~~~~~~~~~~~ 233 (404)
T cd04659 169 LALYAKLGGIPWKLDAD--------SDPADLYIGIGFARSRDG---EVRVTGCAQVFD-SDGLGL---ILRGAPIEEPTE 233 (404)
T ss_pred HHHHHhcCCCceEcccC--------CCCCeEEEEEEEEEcCCC---CEEEEEEEEEEc-CCCCEE---EEecCccCCccc
Confidence 99999999999998742 136799999999999753 222334443444 332122 112222222221
Q ss_pred hhhcccCCCCCCCchhHHHHHHHHHHHHhcCC-CCceEEEEecCCCchhHHHHHHHHHHHHHHHHHhhcCCCCCCEEEEE
Q 008882 319 DLYKSTQDPFGGSVHGGMIRELLIAFRRSTNL-KPHRIIFYRDGVGEGQFSQVLLHEMSAIRQACASLEEGYAPPVTFVV 397 (550)
Q Consensus 319 ~l~~~~~~~~~~~~~~~~~~~~L~~f~~~~~~-~P~~IIiyRdGvsegq~~~v~~~Ev~~i~~a~~~~~~~y~P~it~Iv 397 (550)
+- ....+.++++++|+.|++.++. +|++|||||||+. .++|+++|++||.++. ++|+||+
T Consensus 234 ~~--------~~~~~~~~l~~~l~~y~~~~~~~~P~rIiihrdg~~-------~~~E~~~i~~a~~~~~----~~i~~I~ 294 (404)
T cd04659 234 DR--------SPADLKDLLKRVLEGYRESHRGRDPKRLVLHKDGRF-------TDEEIEGLKEALEELG----IKVDLVE 294 (404)
T ss_pred cc--------CHHHHHHHHHHHHHHHHHHcCCCCCeEEEEECCCCC-------CHHHHHHHHHHHHhhC----ceEEEEE
Confidence 10 0123489999999999999998 9999999999994 5899999999999873 8999999
Q ss_pred EeecccCccCcCCCCCCCCCCCCCCCCCeeeecccccCCCcccEEEeeecCC--------cccccceeEEEEecCCCCCH
Q 008882 398 VQKRHHTRLFPAEHNNRDLTDRSGNILPGTVVDTQICHPTQFDFYLNSHAGI--------RGTSRPIHYHVLYDENRFSA 469 (550)
Q Consensus 398 v~Krh~~Rff~~~~~~~~~~~~~~N~~pGTvVd~~it~p~~~dFyL~Sh~~~--------qGTarPt~Y~Vl~d~~~~~~ 469 (550)
|+|+|++|||..+... ...||++||+||.. .+||||++|... +||++|+| |++++...+.
T Consensus 295 V~k~~~~R~f~~~~~~-----~~~np~~GT~v~~~-----~~~~~L~s~g~~~~~~~~~~~gtp~Pl~--v~~~~~~~~~ 362 (404)
T cd04659 295 VIKSGPHRLFRFGTYP-----NGFPPRRGTYVKLS-----DDEGLLWTHGSVPKYNTYPGMGTPRPLL--LRRHSGNTDL 362 (404)
T ss_pred EEecCCcceEEecCCC-----CCCCCCCceEEEeC-----CCeEEEEecCCccccccCCCCCCCCcEE--EEEccCCCCH
Confidence 9999999999865431 12799999999853 489999999875 89999999 7788888999
Q ss_pred HHHHHHHHHhhhhcCccCC-CccccchhhHHHHHHHHHhh
Q 008882 470 DDLQVLTNNLCYTYARCTR-SVSIVPPAYYAHLAAFRARY 508 (550)
Q Consensus 470 d~lq~lt~~Lc~~y~~~~~-~vslPaPl~yA~~~a~R~r~ 508 (550)
|+|+++||.||++|++++. ++++|+|+||||++|+....
T Consensus 363 ~~l~~~~~~Lt~~~~n~~~~~~~lP~ti~YA~~~a~~~~~ 402 (404)
T cd04659 363 EQLASQILGLTKLNWNSFQFYSRLPVTIHYADRVAKLLKR 402 (404)
T ss_pred HHHHHHHHHHhhcCcCCCCCCCCcceEEeHHHHHHHHHhc
Confidence 9999999999999999988 99999999999999987653
No 9
>COG1431 Argonaute homolog, implicated in RNA metabolism [Translation, ribosomal structure and biogenesis]
Probab=99.43 E-value=3e-12 Score=136.48 Aligned_cols=248 Identities=19% Similarity=0.192 Sum_probs=153.0
Q ss_pred eCCCCCh-hHHHHHHhhhhcCceeeeecccccccCChhhHHHHHHHHHHhcCCcceeecccccccCCccCCCCeEEEEEe
Q 008882 196 LPDVSGS-YGRIKRVCETELGIVSQCCQPRQASRLNIPYFENVALKINVKVGGRNTVLVDAVQKRIPLVTDRPTIIFGSD 274 (550)
Q Consensus 196 lp~~~~~-Y~~IK~~~~~~~GI~TQ~I~~~t~~k~~~~~~~Ni~lKINaKlGG~n~~l~~~~~~~lP~~~~~~tmIIGiD 274 (550)
-+-+++. |+.+|+ ++.=|++|.|.-.+.++.-..+++|++.|+-+|.+|++|.+-+.. ...+-|+|+|
T Consensus 413 e~ykdd~~YailKr---ld~~ipsqvil~~n~rk~~Kg~~tnla~~~~~ktlgqpY~~r~~~--------gpvDaivGlD 481 (685)
T COG1431 413 EMYKDDVKYAILKR---LDETIPSQVILDPNNRKPYKGTKTNLASKRYLKTLGQPYLKRNGL--------GPVDAIVGLD 481 (685)
T ss_pred cccccchHHHHHHh---hcccCcceeeeccccCCcchhhhhHHHHHHHHHhcCCceeeeccC--------CCccceeeee
Confidence 3334444 999998 456699999999888877778899999999999999999876531 1246899999
Q ss_pred ecCCCCCCCCCCcEEEEEEeecC-CCCcceeeEEEeccCchhhhhhhhcccCCCCCCCchhHHHHHHHHHHHHhc--C-C
Q 008882 275 VTHPQPGEDSSPSIAAVVASMDW-PEVTKYRGLVSAQAHNQEIIQDLYKSTQDPFGGSVHGGMIRELLIAFRRST--N-L 350 (550)
Q Consensus 275 Vsh~~~~~~~~pSi~avVaS~d~-~~~~~y~s~~~~Q~~~~e~i~~l~~~~~~~~~~~~~~~~~~~~L~~f~~~~--~-~ 350 (550)
|+...-+ ...+-|++..+|. ..+.+|+-.+.. .. ++.+.-+.+-+.+.+ + .
T Consensus 482 vsr~~~g---n~tV~gct~~f~seg~l~eyy~t~tp------a~----------------GErl~~~g~yle~~~~~gfe 536 (685)
T COG1431 482 VSRVSEG---NWTVEGCTSCFVSEGGLEEYYHTVTP------AL----------------GERLETSGRYLEKMNWRGFE 536 (685)
T ss_pred eeEEeeC---CeEEeeeeEEEeccCceEEeeecccC------Cc----------------cchhhhHHHHHHHHHhhhhh
Confidence 9987532 2333332222220 233344332221 11 111111111222111 1 3
Q ss_pred CCceEEEEecCCCchhHHHHHHHHHHHHHHHHHhhcCCCCCCEEEEEEeecccCccCcCCCCCCCCCCCCCCCCCeeeec
Q 008882 351 KPHRIIFYRDGVGEGQFSQVLLHEMSAIRQACASLEEGYAPPVTFVVVQKRHHTRLFPAEHNNRDLTDRSGNILPGTVVD 430 (550)
Q Consensus 351 ~P~~IIiyRdGvsegq~~~v~~~Ev~~i~~a~~~~~~~y~P~it~Ivv~Krh~~Rff~~~~~~~~~~~~~~N~~pGTvVd 430 (550)
.=++||+.|||- +...|++++++.=.++ .--++++.+.| .+.+||..+.. .+ |..+.
T Consensus 537 ~~n~iV~lRDG~-------l~~~E~aavkeyg~el----gsn~ev~~i~k-nNp~vf~~e~~-------i~----g~f~~ 593 (685)
T COG1431 537 SRNLIVTLRDGK-------LVAGEIAAVKEYGGEL----GSNPEVNRILK-NNPWVFAIEGE-------IW----GAFVR 593 (685)
T ss_pred ccCeeEEEecCc-------cchHHHHHHHHHhhhc----CCChhhheecc-cCCeEEEecce-------ee----eEEEe
Confidence 446799999995 5567777776654444 34445555555 56669886542 11 33332
Q ss_pred ccccCCCcccEEEe---eecCCcccccceeEEEEecCCCCCHHHHHHHHHHhhhhcCccCCC--ccccchhhHHHHHHHH
Q 008882 431 TQICHPTQFDFYLN---SHAGIRGTSRPIHYHVLYDENRFSADDLQVLTNNLCYTYARCTRS--VSIVPPAYYAHLAAFR 505 (550)
Q Consensus 431 ~~it~p~~~dFyL~---Sh~~~qGTarPt~Y~Vl~d~~~~~~d~lq~lt~~Lc~~y~~~~~~--vslPaPl~yA~~~a~R 505 (550)
-++..+. ++ +.....||.+|...-=. +-.+.-|-|- |+|.|+-+++..... ++||||+||||++.|.
T Consensus 594 ~~~s~~h-----~~~~~ynpv~~gT~~pi~~r~~--~g~l~~e~i~-lv~dLT~mNys~~~g~~~rlPApvhYaDk~~kl 665 (685)
T COG1431 594 LDGSTVH-----LCCSPYNPVRRGTPRPIALRRR--DGKLDGELIG-LVHDLTAMNYSNPSGTWSRLPAPVHYADKASKL 665 (685)
T ss_pred cCCcccc-----cccCCCCceecCCCcccccccc--cCccchhhHH-HHHHhhhhccCCCCCceecCCcchhhhHHHHHH
Confidence 2211110 11 12345689999874432 2335555555 999999999998888 9999999999999999
Q ss_pred Hhhhh
Q 008882 506 ARYYI 510 (550)
Q Consensus 506 ~r~~~ 510 (550)
++.-+
T Consensus 666 ~~~~~ 670 (685)
T COG1431 666 ARYGV 670 (685)
T ss_pred HhccC
Confidence 98743
No 10
>PTZ00146 fibrillarin; Provisional
Probab=96.51 E-value=0.0048 Score=63.40 Aligned_cols=13 Identities=15% Similarity=0.373 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHH
Q 008882 369 QVLLHEMSAIRQA 381 (550)
Q Consensus 369 ~v~~~Ev~~i~~a 381 (550)
.++..|++.++++
T Consensus 250 ~~f~~ev~~L~~~ 262 (293)
T PTZ00146 250 VVFASEVQKLKKE 262 (293)
T ss_pred HHHHHHHHHHHHc
Confidence 3445666666655
No 11
>PTZ00146 fibrillarin; Provisional
Probab=96.32 E-value=0.0069 Score=62.23 Aligned_cols=10 Identities=40% Similarity=0.617 Sum_probs=4.0
Q ss_pred CCCCCCCCCC
Q 008882 48 TGRGLHSGSD 57 (550)
Q Consensus 48 ~~~~~~~~~~ 57 (550)
+|||+++|++
T Consensus 44 ~~~~~~~~~~ 53 (293)
T PTZ00146 44 GGRGGGGGGG 53 (293)
T ss_pred CCCCCCCCCC
Confidence 3444333443
No 12
>PF13032 DUF3893: Domain of unknown function (DUF3893)
Probab=95.21 E-value=0.042 Score=50.39 Aligned_cols=57 Identities=18% Similarity=0.138 Sum_probs=47.3
Q ss_pred cccceeEEEEecCCCCCHHHHHHHHHHhhhhcCccCCCccccchhhHHHHHHHHHhhhhcc
Q 008882 452 TSRPIHYHVLYDENRFSADDLQVLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARYYIED 512 (550)
Q Consensus 452 TarPt~Y~Vl~d~~~~~~d~lq~lt~~Lc~~y~~~~~~vslPaPl~yA~~~a~R~r~~~~~ 512 (550)
....+=++|+.-...-+.++|..|||.||+.+.-+...+.+|.|||+|+++ ++|+-+
T Consensus 66 ~~~ilEI~V~~~~~~d~~~~lA~~vh~LR~~~~~~~~~l~lP~PLHlak~~----~eYi~~ 122 (138)
T PF13032_consen 66 NPQILEITVLGCQPEDDPEALAKLVHYLRRSPPLYDENLALPLPLHLAKQA----KEYILP 122 (138)
T ss_pred CCCceEEEEeccCCCCCHHHHHHHHHHHHhCcccccccccCcccHHHHHHH----HHHccc
Confidence 455666788877666789999999999999988999999999999999884 566654
No 13
>PF12764 Gly-rich_Ago1: Glycine-rich region of argonaut; InterPro: IPR024357 This domain is found in the N terminus of some argonaut proteins. Argonaut (AGO) proteins are involved in RNA-mediated post-transcriptional gene silencing [].
Probab=94.32 E-value=0.34 Score=41.50 Aligned_cols=31 Identities=29% Similarity=0.409 Sum_probs=13.9
Q ss_pred CCCCCCCCCCCCCCCCccchhhHHHHHhhhhcc
Q 008882 71 SPAPSSPSVSASSPSSSSVSTLVEETEQKLALA 103 (550)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (550)
.|+|.+++++ ..+...++..++.-.++|++.
T Consensus 60 qp~pSea~ss--s~p~e~s~~qv~QQfqqLsi~ 90 (104)
T PF12764_consen 60 QPSPSEASSS--SQPPEPSTVQVTQQFQQLSIQ 90 (104)
T ss_pred CCCcCcCCCc--cCCCCcchHHHHHHHHHHhhc
Confidence 3555555443 222334444444444444444
No 14
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=93.22 E-value=0.19 Score=50.00 Aligned_cols=8 Identities=50% Similarity=0.621 Sum_probs=4.3
Q ss_pred HHHHHHHh
Q 008882 138 NHFMVQLA 145 (550)
Q Consensus 138 n~F~~~L~ 145 (550)
|-|..+|.
T Consensus 135 nPfrSKLA 142 (317)
T KOG1596|consen 135 NPFRSKLA 142 (317)
T ss_pred ChHHHHHH
Confidence 55555554
No 15
>PRK11617 endonuclease V; Provisional
Probab=92.47 E-value=6 Score=39.29 Aligned_cols=48 Identities=17% Similarity=0.235 Sum_probs=35.8
Q ss_pred ccceeEEEEecCCCCCHHHHHHHHHHhhhhcCccCCCccccchhhHHHHHHHHHhhhh
Q 008882 453 SRPIHYHVLYDENRFSADDLQVLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARYYI 510 (550)
Q Consensus 453 arPt~Y~Vl~d~~~~~~d~lq~lt~~Lc~~y~~~~~~vslPaPl~yA~~~a~R~r~~~ 510 (550)
.+|.-..+ -..++.|+-..++..+|- --++|.|+..||.++++.+...
T Consensus 170 ~kPiyVS~---Gh~i~l~~A~~~v~~~~~-------~yRlPePlR~Ad~ls~~~~~~~ 217 (224)
T PRK11617 170 CNPLFIST---GHRVSLDSALAWVQRCMK-------GYRLPEPTRWADALASRRPAFV 217 (224)
T ss_pred CCCEEEcC---CCCcCHHHHHHHHHHHcc-------CCCCCHHHHHHHHHHhhhhhhh
Confidence 46663332 245889999999988763 2479999999999998877654
No 16
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=91.98 E-value=0.33 Score=48.33 Aligned_cols=12 Identities=17% Similarity=0.393 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHH
Q 008882 369 QVLLHEMSAIRQ 380 (550)
Q Consensus 369 ~v~~~Ev~~i~~ 380 (550)
.|...|++.+++
T Consensus 274 ~vFa~Ev~klqe 285 (317)
T KOG1596|consen 274 AVFAAEVKKLQE 285 (317)
T ss_pred HHHHHHHHHHHH
Confidence 455566655544
No 17
>PF08459 UvrC_HhH_N: UvrC Helix-hairpin-helix N-terminal; InterPro: IPR001162 During the process of Escherichia coli nucleotide excision repair, DNA damage recognition and processing are achieved by the action of the uvrA, uvrB, and uvrC gene products []. The UvrC proteins contain 4 conserved regions: a central region which interacts with UvrB (Uvr domain), a Helix hairpin Helix (HhH) domain important for 5 prime incision of damage DNA and the homology regions 1 and 2 of unknown function. UvrC homology region 2 is specific for UvrC proteins, whereas UvrC homology region 1 is also shared by few other nucleases. Proteins that contain the UvrC homology region 1, IPR000305 from INTERPRO, are listed below: Prokaryotic UvrC proteins. Bacteriophage T4 END2 protein. Small subunit of ribonucleotide reductase enzyme. T4 TEV1 protein. Endonuclease specific to the thymidylate synthase (td) gene splice junction. Found in putative intron-homing endonucleases encoded by group I introns of fungi and phage. Mycobacterium hypothetical protein Y002. Exonuclease by similarity. Bacillus subtilis hypothetical protein YURQ. ; GO: 0003677 DNA binding, 0004518 nuclease activity, 0006289 nucleotide-excision repair; PDB: 3C65_A 2NRZ_A 2NRR_A 2NRX_A 2NRV_A 2NRT_A 2NRW_A.
Probab=87.53 E-value=3.7 Score=38.45 Aligned_cols=100 Identities=21% Similarity=0.261 Sum_probs=50.2
Q ss_pred CCeEEEEEeecCCCCCCCCCCcEEEEEEeecCCCCc-ceeeEEEeccCchhhhhhhhcccCCCCCCCchhHHHHHHHHHH
Q 008882 266 RPTIIFGSDVTHPQPGEDSSPSIAAVVASMDWPEVT-KYRGLVSAQAHNQEIIQDLYKSTQDPFGGSVHGGMIRELLIAF 344 (550)
Q Consensus 266 ~~tmIIGiDVsh~~~~~~~~pSi~avVaS~d~~~~~-~y~s~~~~Q~~~~e~i~~l~~~~~~~~~~~~~~~~~~~~L~~f 344 (550)
.|.-|-++|+||-.. .-.++++|.-.| .... +.+-.+.+... +-.+|+ .+|.|.|..+
T Consensus 10 ~P~rIE~fDiSh~~G----~~~Vgs~Vvf~~-G~~~k~~YR~f~i~~~--~~~dDy--------------~~M~Evl~RR 68 (155)
T PF08459_consen 10 LPRRIECFDISHIQG----SDTVGSMVVFEN-GKPDKSEYRRFNIKTV--DGGDDY--------------AAMREVLTRR 68 (155)
T ss_dssp --SEEEEEEEEECTT----TCEEEEEEEEET-TEE-GGG-EEEEEE----STT-HH--------------HHHHHHHHHH
T ss_pred CCCEEEEEECcccCC----cccEEEEEEEEC-CccChhhCceEecCCC--CCCcHH--------------HHHHHHHHHH
Confidence 468899999999753 346777776555 3221 22222333211 112443 4455555555
Q ss_pred HH----hcCCCCceEEEEecCCCchhHHHHHHHHHHHHHHHHHhhcCCCCCCEEEEEEeec
Q 008882 345 RR----STNLKPHRIIFYRDGVGEGQFSQVLLHEMSAIRQACASLEEGYAPPVTFVVVQKR 401 (550)
Q Consensus 345 ~~----~~~~~P~~IIiyRdGvsegq~~~v~~~Ev~~i~~a~~~~~~~y~P~it~Ivv~Kr 401 (550)
.+ ....+|+-||| || +.+|+ .+.++++.++.- . +-+|.+.|+
T Consensus 69 ~~~~~~~~~~lPDLilI--DG-G~gQl--------~aa~~~l~~lgl--~--i~viglaK~ 114 (155)
T PF08459_consen 69 FKRLKEEKEPLPDLILI--DG-GKGQL--------NAAKEVLKELGL--N--IPVIGLAKN 114 (155)
T ss_dssp HCCCHHHT----SEEEE--SS-SHHHH--------HHHHHHHHCTT--------EEEEESS
T ss_pred HhcccccCCCCCCEEEE--cC-CHHHH--------HHHHHHHHHcCC--C--eEEEEEEec
Confidence 43 33479998887 77 44554 456788887732 2 566777665
No 18
>PLN03202 protein argonaute; Provisional
Probab=87.42 E-value=0.22 Score=59.15 Aligned_cols=44 Identities=30% Similarity=0.446 Sum_probs=35.4
Q ss_pred CCcccccCCCCCCCccCchhhhhHHHHHHHHh--hhccccc-eeecc
Q 008882 114 SSQAMRLPVRPGFGTVGRKCVVRANHFMVQLA--ERDIHHY-DVFNP 157 (550)
Q Consensus 114 s~~~~~~P~rP~~G~~g~~~~v~an~F~~~L~--~~~~~~G-m~I~~ 157 (550)
+.+...+|.|||+|+.|+++.+.+|+|...+. +...++| ++|.+
T Consensus 27 ~~~~~~~~~RPg~Gt~G~~i~l~aN~f~v~~~~~~~~ly~Y~V~i~p 73 (900)
T PLN03202 27 SKPKRLPMARRGFGSKGQKIQLLTNHFKVSVNNPDGHFFHYSVSLTY 73 (900)
T ss_pred cccccccCCCCCCCCCCCEEEEEeeEEEEeccCCCCcEEEEEEEecc
Confidence 34566789999999999999999999988764 4446677 78875
No 19
>cd06559 Endonuclease_V Endonuclease_V, a DNA repair enzyme that initiates repair of nitrosative deaminated purine bases. Endonuclease_V (EndoV) is an enzyme that can initiate repair of all possible deaminated DNA bases. EndoV cleaves the DNA strand containing lesions at the second phosphodiester bond 3' to the lesion using Mg2+ as a cofactor. EndoV homologs are conserved throughout all domains of life from bacteria to humans. EndoV is encoded by the nfi gene and nfi null mutant mice have a phenotype prone to cancer. The ability of endonuclease V to recognize mismatches and abnormal replicative DNA structures suggests that the enzyme plays an important role in DNA metabolism. The details of downstream processing for the EndoV pathway remain unknown.
Probab=87.29 E-value=11 Score=36.97 Aligned_cols=42 Identities=17% Similarity=0.226 Sum_probs=31.2
Q ss_pred ccceeEEEEecCCCCCHHHHHHHHHHhhhhcCccCCCccccchhhHHHHHHH
Q 008882 453 SRPIHYHVLYDENRFSADDLQVLTNNLCYTYARCTRSVSIVPPAYYAHLAAF 504 (550)
Q Consensus 453 arPt~Y~Vl~d~~~~~~d~lq~lt~~Lc~~y~~~~~~vslPaPl~yA~~~a~ 504 (550)
.+|.-..+ -..++.|+-.+++-.+|=. -++|.|+..||++++
T Consensus 166 ~~PiyVS~---Gh~i~l~~A~~~v~~~~~~-------~r~Pep~R~Ad~~sr 207 (208)
T cd06559 166 VKPVYVSP---GHRIDLETAVELVLKCCKG-------YRLPEPTRLADLLSR 207 (208)
T ss_pred CCCEEEcC---CCCcCHHHHHHHHHHHccC-------CCCCcHHHHHHHHhc
Confidence 56653332 2457899999999777532 689999999999985
No 20
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=84.42 E-value=1.8 Score=49.64 Aligned_cols=6 Identities=50% Similarity=0.883 Sum_probs=3.0
Q ss_pred CCCCCC
Q 008882 4 RGGGGR 9 (550)
Q Consensus 4 ~~~~~~ 9 (550)
.|||.|
T Consensus 567 ~~~~~~ 572 (629)
T PRK11634 567 TGGERR 572 (629)
T ss_pred cccccC
Confidence 455555
No 21
>TIGR00194 uvrC excinuclease ABC, C subunit. This family consists of the DNA repair enzyme UvrC, an ABC excinuclease subunit which interacts with the UvrA/UvrB complex to excise UV-damaged nucleotide segments.
Probab=83.71 E-value=6.1 Score=44.75 Aligned_cols=113 Identities=22% Similarity=0.239 Sum_probs=61.1
Q ss_pred CeEEEEEeecCCCCCCCCCCcEEEEEEeecCCCCcc-eeeEEEeccCchhhhhhhhcccCCCCCCCchhHHHHHHHHHHH
Q 008882 267 PTIIFGSDVTHPQPGEDSSPSIAAVVASMDWPEVTK-YRGLVSAQAHNQEIIQDLYKSTQDPFGGSVHGGMIRELLIAFR 345 (550)
Q Consensus 267 ~tmIIGiDVsh~~~~~~~~pSi~avVaS~d~~~~~~-y~s~~~~Q~~~~e~i~~l~~~~~~~~~~~~~~~~~~~~L~~f~ 345 (550)
..-|-++|+||-.. .-.|+++|.-.| ....+ .+-.+.+.. .+-.+|+ ..|.+++.+.+..+.
T Consensus 381 ~~rIE~fDiSh~~G----~~~V~smVvf~~-G~~~k~~YR~f~i~~--~~~~dDy----------a~m~Evl~RR~~r~~ 443 (574)
T TIGR00194 381 IKRIEIFDISHIDG----SQTVGSMVVFED-GKPLKASYRRYNINS--ITGGDDY----------AAMREVLRRRYSSIQ 443 (574)
T ss_pred CCEEEEEECCccCC----CcceEEEEEEeC-CccChhhCCeeecCC--CCCCCHH----------HHHHHHHHHHHhhhc
Confidence 37799999999753 356777777666 33221 111122211 0112443 123444444443333
Q ss_pred HhcC-CCCceEEEEecCCCchhHHHHHHHHHHHHHHHHHhhcCCCCCCEEEEEEee--cccCccCcC
Q 008882 346 RSTN-LKPHRIIFYRDGVGEGQFSQVLLHEMSAIRQACASLEEGYAPPVTFVVVQK--RHHTRLFPA 409 (550)
Q Consensus 346 ~~~~-~~P~~IIiyRdGvsegq~~~v~~~Ev~~i~~a~~~~~~~y~P~it~Ivv~K--rh~~Rff~~ 409 (550)
+... .+|+-||| || +.||+ .+..+++.+++ ....|.+|.+.| +|.+++|..
T Consensus 444 ~~~~~~~PDLili--DG-GkgQl--------~aa~~~l~~lg--~~~~i~viglaK~~~~~~~i~~~ 497 (574)
T TIGR00194 444 KKNNLPLPDLILI--DG-GKGQL--------NAALEVLKSLG--VVNKPIVIGLAKAKRHETDIFLI 497 (574)
T ss_pred cccCCCCCCEEEE--eC-CHHHH--------HHHHHHHHHcC--CCCCCcEEEEEecCCCceEEEeC
Confidence 2212 48987777 76 45664 44567777663 211466788888 666677754
No 22
>COG4371 Predicted membrane protein [Function unknown]
Probab=79.32 E-value=4.9 Score=40.15 Aligned_cols=16 Identities=31% Similarity=0.399 Sum_probs=11.7
Q ss_pred ccccCCCCCCCccCch
Q 008882 117 AMRLPVRPGFGTVGRK 132 (550)
Q Consensus 117 ~~~~P~rP~~G~~g~~ 132 (550)
.+|.|.+|-+|.+++.
T Consensus 190 lLRHPEyWVYg~~~~~ 205 (334)
T COG4371 190 LLRHPEYWVYGNVERA 205 (334)
T ss_pred HHcCCceeEeccchhh
Confidence 4588888888877643
No 23
>PRK12306 uvrC excinuclease ABC subunit C; Reviewed
Probab=77.92 E-value=15 Score=41.09 Aligned_cols=110 Identities=19% Similarity=0.315 Sum_probs=59.7
Q ss_pred CCeEEEEEeecCCCCCCCCCCcEEEEEEeecCCCCcc-eeeEEEeccCchhhhhhhhcccCCCCCCCchhHHHHHHHHHH
Q 008882 266 RPTIIFGSDVTHPQPGEDSSPSIAAVVASMDWPEVTK-YRGLVSAQAHNQEIIQDLYKSTQDPFGGSVHGGMIRELLIAF 344 (550)
Q Consensus 266 ~~tmIIGiDVsh~~~~~~~~pSi~avVaS~d~~~~~~-y~s~~~~Q~~~~e~i~~l~~~~~~~~~~~~~~~~~~~~L~~f 344 (550)
.+.-|-++|+||-.. .-.++++|.-.| ....+ .+-.+.+.. .+-.+|+ ..|.+++.+.+..+
T Consensus 365 ~p~rIE~fDiSh~~G----~~~V~smVvf~~-G~p~k~~YR~f~Ik~--~~~~dDy----------~~m~Evl~RR~~r~ 427 (519)
T PRK12306 365 PPNVIECFDISHLSG----TSTVGSMVQFRN-GKPDKKNYRRFKIKT--VEGIDDF----------ASIAEVVRRRYSRL 427 (519)
T ss_pred CCCeEEEEECCccCC----CCceEEEEEEeC-CccChhhcCeeecCC--CCCCCHH----------HHHHHHHHHHHhhc
Confidence 456799999999753 356777777666 33221 112222221 1112443 12344444443333
Q ss_pred HHhcCCCCceEEEEecCCCchhHHHHHHHHHHHHHHHHHhhcCCCCCCEEEEEEeecccCccCc
Q 008882 345 RRSTNLKPHRIIFYRDGVGEGQFSQVLLHEMSAIRQACASLEEGYAPPVTFVVVQKRHHTRLFP 408 (550)
Q Consensus 345 ~~~~~~~P~~IIiyRdGvsegq~~~v~~~Ev~~i~~a~~~~~~~y~P~it~Ivv~Krh~~Rff~ 408 (550)
.+.++.+|+-||| || +-||+ .+..+++.+++ . .|.+|.+.|+. .++|.
T Consensus 428 ~~~~~~~PDLilI--DG-GkgQl--------~aa~~~l~elg--~--~i~viglaK~~-e~i~~ 475 (519)
T PRK12306 428 LEENSELPDLIVI--DG-GKGQL--------SSAFKELRKLG--L--KIPLISIAKRE-EEIYV 475 (519)
T ss_pred ccccCCCCCEEEE--eC-CHHHH--------HHHHHHHHHcC--C--CCcEEEEEcCc-eEEEe
Confidence 2211248987777 76 45665 34567777763 2 47788888865 44554
No 24
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=76.89 E-value=5.2 Score=45.29 Aligned_cols=15 Identities=20% Similarity=0.337 Sum_probs=6.1
Q ss_pred CCCCCCCCCCCCCCC
Q 008882 14 RRDQPTQAPAPSFQR 28 (550)
Q Consensus 14 ~~~~~~~~~~~~~~~ 28 (550)
+||.-+++|.|++++
T Consensus 787 ~~gp~g~gggP~~~q 801 (944)
T KOG4307|consen 787 GRGPHGGGGGPNFYQ 801 (944)
T ss_pred CCCCCCCCCCccccc
Confidence 444433344444433
No 25
>PRK14670 uvrC excinuclease ABC subunit C; Provisional
Probab=75.96 E-value=20 Score=40.58 Aligned_cols=114 Identities=20% Similarity=0.235 Sum_probs=60.6
Q ss_pred CCeEEEEEeecCCCCCCCCCCcEEEEEEeecCCCCcc-eeeEEEeccCchhhhhhhhcccCCCCCCCchhHHHHHHHHHH
Q 008882 266 RPTIIFGSDVTHPQPGEDSSPSIAAVVASMDWPEVTK-YRGLVSAQAHNQEIIQDLYKSTQDPFGGSVHGGMIRELLIAF 344 (550)
Q Consensus 266 ~~tmIIGiDVsh~~~~~~~~pSi~avVaS~d~~~~~~-y~s~~~~Q~~~~e~i~~l~~~~~~~~~~~~~~~~~~~~L~~f 344 (550)
.|.-|-++|+||-.. .-.|+++|.-.| ....+ .+-.+.+........+|+ ..|.+++.+.+..+
T Consensus 357 ~p~rIE~fDiSh~~G----~~~V~smVvf~~-G~~~k~~YRkf~ik~~~~~~~DD~----------a~M~Evl~RR~~r~ 421 (574)
T PRK14670 357 LPKTIEGFDIAHLNG----QKTVASLVTFKM-GKPFKDGYRVYKINSLLKGEIDDF----------KAIKEVISRRYSKL 421 (574)
T ss_pred CCCeEEEEECCccCC----CCceEEEEEEEC-CccChhhCCeeeccCCCCCCCCHH----------HHHHHHHHHHHhhc
Confidence 467899999999753 346777777666 33221 222222221000002443 12334444333333
Q ss_pred HHhcCCCCceEEEEecCCCchhHHHHHHHHHHHHHHHHHhhcCCCCCCEEEEEEeecccCccCc
Q 008882 345 RRSTNLKPHRIIFYRDGVGEGQFSQVLLHEMSAIRQACASLEEGYAPPVTFVVVQKRHHTRLFP 408 (550)
Q Consensus 345 ~~~~~~~P~~IIiyRdGvsegq~~~v~~~Ev~~i~~a~~~~~~~y~P~it~Ivv~Krh~~Rff~ 408 (550)
.+.++.+|+-||| || +.||+ .+..+++.+++ ....|.+|.+.|+. .++|.
T Consensus 422 ~~~~~~~PDLilI--DG-GkgQl--------~aa~~vl~~lg--~~~~i~v~gLaK~~-e~i~~ 471 (574)
T PRK14670 422 INEQLELPNLILI--DG-GKGQL--------NAAYSILKGLK--IENKVKVCALAKKE-ETIFL 471 (574)
T ss_pred ccccCCCCCEEEE--eC-CHHHH--------HHHHHHHHHcC--CCCCceEEEEecCC-eEEEe
Confidence 2211258988877 76 45554 45577777663 22237788888865 34553
No 26
>PF00763 THF_DHG_CYH: Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain; InterPro: IPR020630 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the N-terminal catalytic domain of these enzymes. ; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 2C2X_B 2C2Y_A 1EDZ_A 1EE9_A 4A26_B 3NGL_C 3NGX_A 1B0A_A 1DIA_A 1A4I_B ....
Probab=75.58 E-value=15 Score=32.57 Aligned_cols=72 Identities=22% Similarity=0.283 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHhhhcCCCceEEEEEeCCCCCh--hHHHHHHhhhhcCceeeeecccccccCChhhHHHHHHHHHHh
Q 008882 171 IEKALVDVHNRTTQQGKQLQLLIIILPDVSGS--YGRIKRVCETELGIVSQCCQPRQASRLNIPYFENVALKINVK 244 (550)
Q Consensus 171 ve~~L~~i~~~~~~~~~~~~lvlvIlp~~~~~--Y~~IK~~~~~~~GI~TQ~I~~~t~~k~~~~~~~Ni~lKINaK 244 (550)
+.+.|.......+..+..|.|+++.+.+.... |...|+..+.+.||.+..+.... .....-+...+.++|.-
T Consensus 12 i~~~l~~~i~~l~~~~~~P~Laii~vg~d~~S~~Y~~~k~k~~~~~Gi~~~~~~l~~--~~~~~el~~~i~~lN~D 85 (117)
T PF00763_consen 12 IKEELKEEIEKLKEKGITPKLAIILVGDDPASISYVRSKQKAAEKLGIEFELIELPE--DISEEELLELIEKLNED 85 (117)
T ss_dssp HHHHHHHHHHHHHHCT---EEEEEEES--HHHHHHHHHHHHHHHHHT-EEEEEEE-T--TSSHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHhcCCCcEEEEEecCCChhHHHHHHHHHHHHHHcCCceEEEECCC--CcCHHHHHHHHHHHhCC
Confidence 33444444444333356788988888876655 99888888889999999997642 23455677888888865
No 27
>PRK14671 uvrC excinuclease ABC subunit C; Provisional
Probab=74.00 E-value=16 Score=41.76 Aligned_cols=107 Identities=22% Similarity=0.256 Sum_probs=59.6
Q ss_pred CCeEEEEEeecCCCCCCCCCCcEEEEEEeecCCCCcc-eeeEEEeccCchhhhhhhhcccCCCCCCCchhHHHHHHHHHH
Q 008882 266 RPTIIFGSDVTHPQPGEDSSPSIAAVVASMDWPEVTK-YRGLVSAQAHNQEIIQDLYKSTQDPFGGSVHGGMIRELLIAF 344 (550)
Q Consensus 266 ~~tmIIGiDVsh~~~~~~~~pSi~avVaS~d~~~~~~-y~s~~~~Q~~~~e~i~~l~~~~~~~~~~~~~~~~~~~~L~~f 344 (550)
.+.-|-++|+||-.. .-.|+++|.-.| ....+ .+-.+.+... +-.+|+ .+|.|.|...
T Consensus 414 ~p~rIE~fDiSh~~G----~~~V~smVvf~~-G~~~k~~YR~f~ik~~--~~~dDy--------------~~m~Evl~RR 472 (621)
T PRK14671 414 LPRRIECFDNSHFQG----TDYVSSMVCFVD-GKPKKSDYRKFKLRSF--EGSDDY--------------AAMREVVTRR 472 (621)
T ss_pred CCCEEEEEECCccCC----CCceEEEEEEEC-CccChhhCCeeecCCC--CCCCHH--------------HHHHHHHHHH
Confidence 457899999999753 356777777666 33221 1111222210 112443 3444444443
Q ss_pred HHh----cCCCCceEEEEecCCCchhHHHHHHHHHHHHHHHHHhhcCCCCCCEEEEEEeecccCccCcC
Q 008882 345 RRS----TNLKPHRIIFYRDGVGEGQFSQVLLHEMSAIRQACASLEEGYAPPVTFVVVQKRHHTRLFPA 409 (550)
Q Consensus 345 ~~~----~~~~P~~IIiyRdGvsegq~~~v~~~Ev~~i~~a~~~~~~~y~P~it~Ivv~Krh~~Rff~~ 409 (550)
... +..+|+-||| || +.||+ .+..+++.+++- .|.+|...|+ ..++|..
T Consensus 473 ~~r~~~~~~~~PDLilI--DG-GkgQl--------~aa~~vl~~lg~----~i~viglaK~-~e~i~~~ 525 (621)
T PRK14671 473 YSGSLAEELPLPDLIVI--DG-GKGQV--------NSAWKVLQELGL----SVPVIGLAKR-LEEIFTP 525 (621)
T ss_pred hhccccccCCCCCEEEE--eC-CHHHH--------HHHHHHHHHcCC----CCcEEEEEec-ccEEEeC
Confidence 322 1258998887 76 45564 455777777632 4778888884 3555543
No 28
>KOG3915 consensus Transcription regulator dachshund, contains SKI/SNO domain [Transcription]
Probab=71.75 E-value=17 Score=39.39 Aligned_cols=9 Identities=22% Similarity=0.423 Sum_probs=4.7
Q ss_pred HHHHHHHHh
Q 008882 137 ANHFMVQLA 145 (550)
Q Consensus 137 an~F~~~L~ 145 (550)
+.-|++.|.
T Consensus 204 fdlFLKhlV 212 (641)
T KOG3915|consen 204 FDLFLKHLV 212 (641)
T ss_pred HHHHHHHHh
Confidence 355555554
No 29
>PRK14667 uvrC excinuclease ABC subunit C; Provisional
Probab=71.64 E-value=35 Score=38.71 Aligned_cols=107 Identities=23% Similarity=0.276 Sum_probs=60.5
Q ss_pred CCeEEEEEeecCCCCCCCCCCcEEEEEEeecCCCCcc-eeeEEEeccCchhhhhhhhcccCCCCCCCchhHHHHHHHHHH
Q 008882 266 RPTIIFGSDVTHPQPGEDSSPSIAAVVASMDWPEVTK-YRGLVSAQAHNQEIIQDLYKSTQDPFGGSVHGGMIRELLIAF 344 (550)
Q Consensus 266 ~~tmIIGiDVsh~~~~~~~~pSi~avVaS~d~~~~~~-y~s~~~~Q~~~~e~i~~l~~~~~~~~~~~~~~~~~~~~L~~f 344 (550)
.+.-|-++|+||-.. .-.++++|.-.| ....+ .+-.+.+.. .+-.+|+ .+|.|.|...
T Consensus 360 ~p~rIE~fDiSh~~G----~~~V~smVvf~~-G~~~k~~YR~f~i~~--~~~~dD~--------------~~m~Evl~RR 418 (567)
T PRK14667 360 LPERIEGFDISHFYG----EFTVGSCVVWED-GSMNKKEYRRYKIKT--VDGIDDY--------------ASLREVLTRR 418 (567)
T ss_pred CCCeEEEEECcccCC----CcceEEEEEEEC-CccChhhCCeeecCC--CCCCCHH--------------HHHHHHHHHH
Confidence 467899999999753 456777777666 33221 111222221 1113453 3444444443
Q ss_pred HHh----cCCCCceEEEEecCCCchhHHHHHHHHHHHHHHHHHhhcCCCCCCEEEEEEeecccCccCcC
Q 008882 345 RRS----TNLKPHRIIFYRDGVGEGQFSQVLLHEMSAIRQACASLEEGYAPPVTFVVVQKRHHTRLFPA 409 (550)
Q Consensus 345 ~~~----~~~~P~~IIiyRdGvsegq~~~v~~~Ev~~i~~a~~~~~~~y~P~it~Ivv~Krh~~Rff~~ 409 (550)
.+. +..+|+-||| || +.||+ .+..+++.+++. .|.+|...|+. .++|..
T Consensus 419 ~~r~~~~~~~~PDLili--DG-GkgQl--------~aa~~~l~~lg~----~i~v~glaK~~-e~i~~~ 471 (567)
T PRK14667 419 ARRYKEGENPMPDLWLI--DG-GKGQL--------SVGIEVRDRLGL----NIKVFSLAKKE-EILYTE 471 (567)
T ss_pred hhhccccCCCCCCEEEE--eC-CHHHH--------HHHHHHHHHcCC----CCcEEEEEecC-cEEEcC
Confidence 332 2248998777 76 45554 455777777732 46788888865 445543
No 30
>COG1515 Nfi Deoxyinosine 3'endonuclease (endonuclease V) [DNA replication, recombination, and repair]
Probab=71.57 E-value=99 Score=30.49 Aligned_cols=36 Identities=19% Similarity=0.189 Sum_probs=29.0
Q ss_pred CCCCCHHHHHHHHHHhhhhcCccCCCccccchhhHHHHHHHHH
Q 008882 464 ENRFSADDLQVLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRA 506 (550)
Q Consensus 464 ~~~~~~d~lq~lt~~Lc~~y~~~~~~vslPaPl~yA~~~a~R~ 506 (550)
.+..+.++.-+|+..||- . .++|.|+..||+++++.
T Consensus 176 g~~i~l~sal~l~~~l~~------~-~rlpeptr~ad~~a~~~ 211 (212)
T COG1515 176 GHRISLPSALKLAQRLSK------G-YRLPEPTRLADILAKKR 211 (212)
T ss_pred CCccCHHHHHHHHHHHcc------c-ccCCCcccHHHHhhhhc
Confidence 345688999999988853 3 78999999999999764
No 31
>PRK14669 uvrC excinuclease ABC subunit C; Provisional
Probab=70.59 E-value=25 Score=40.35 Aligned_cols=112 Identities=18% Similarity=0.233 Sum_probs=60.2
Q ss_pred CCeEEEEEeecCCCCCCCCCCcEEEEEEeecCCCCcc-eeeEEEeccCchhhhhhhhcccCCCCCCCchhHHHHHHHHHH
Q 008882 266 RPTIIFGSDVTHPQPGEDSSPSIAAVVASMDWPEVTK-YRGLVSAQAHNQEIIQDLYKSTQDPFGGSVHGGMIRELLIAF 344 (550)
Q Consensus 266 ~~tmIIGiDVsh~~~~~~~~pSi~avVaS~d~~~~~~-y~s~~~~Q~~~~e~i~~l~~~~~~~~~~~~~~~~~~~~L~~f 344 (550)
.+.-|-++|+||-.. .-.++++|.-.| ....+ .+-.+.+.. .+-.+|+ ..|.+++.+.+..+
T Consensus 395 ~p~rIE~fDiSh~~G----~~~V~smVvf~~-G~~~k~~YRkf~Ik~--~~~~DDy----------a~M~Evl~RR~~r~ 457 (624)
T PRK14669 395 LPSRIECFDISHIQG----AETVASMVVWED-GKMKKSDYRKFIIKT--VVGVDDF----------ASMREVVTRRYSRL 457 (624)
T ss_pred CCCeEEEEECCccCC----CCceEEEEEEEC-CccChhhCCeeecCC--CCCCCHH----------HHHHHHHHHHhhcc
Confidence 467899999999753 346777777666 32221 111222211 0112443 12344444443333
Q ss_pred HHhcCCCCceEEEEecCCCchhHHHHHHHHHHHHHHHHHhhcCCCCCCEEEEEEeecccCccCcC
Q 008882 345 RRSTNLKPHRIIFYRDGVGEGQFSQVLLHEMSAIRQACASLEEGYAPPVTFVVVQKRHHTRLFPA 409 (550)
Q Consensus 345 ~~~~~~~P~~IIiyRdGvsegq~~~v~~~Ev~~i~~a~~~~~~~y~P~it~Ivv~Krh~~Rff~~ 409 (550)
.+....+|+-||| || +.||+ .+..+++.+++. . .|.+|.+.|+. .++|..
T Consensus 458 ~~~~~~~PDLilI--DG-GkgQl--------~aa~~vl~elgl--~-~i~vigLaK~~-e~i~~p 507 (624)
T PRK14669 458 QEEKQPMPGLVLI--DG-GLGQL--------HAAAEALEAIGI--T-DQPLASIAKRE-EIIYVF 507 (624)
T ss_pred ccccCCCCCEEEE--eC-CHHHH--------HHHHHHHHHcCC--C-CCcEEEEecCC-eEEECC
Confidence 2222248987777 76 45564 455777777632 1 26788888866 445543
No 32
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=68.93 E-value=18 Score=41.42 Aligned_cols=10 Identities=20% Similarity=0.278 Sum_probs=4.3
Q ss_pred HHHHHHHHHH
Q 008882 172 EKALVDVHNR 181 (550)
Q Consensus 172 e~~L~~i~~~ 181 (550)
+..|..+.+.
T Consensus 548 ~~~~~~~~~~ 557 (624)
T PRK14959 548 ETTLAGLVRD 557 (624)
T ss_pred HHHHHHHHHH
Confidence 3344444443
No 33
>PRK14672 uvrC excinuclease ABC subunit C; Provisional
Probab=68.14 E-value=57 Score=37.71 Aligned_cols=108 Identities=28% Similarity=0.373 Sum_probs=61.3
Q ss_pred CCeEEEEEeecCCCCCCCCCCcEEEEEEeecCCCCc-ceeeEEEeccCchhhhhhhhcccCCCCCCCchhHHHHHHHHHH
Q 008882 266 RPTIIFGSDVTHPQPGEDSSPSIAAVVASMDWPEVT-KYRGLVSAQAHNQEIIQDLYKSTQDPFGGSVHGGMIRELLIAF 344 (550)
Q Consensus 266 ~~tmIIGiDVsh~~~~~~~~pSi~avVaS~d~~~~~-~y~s~~~~Q~~~~e~i~~l~~~~~~~~~~~~~~~~~~~~L~~f 344 (550)
.+..|-++|+||-.. .-.|+++|.-.| .... +.+-.+.+... +.-++|+ .+|.|.|...
T Consensus 453 ~p~rIE~fDiSh~~G----~~~VasmVvf~~-G~p~k~~YR~f~ik~~-~~~~DD~--------------asM~Evl~RR 512 (691)
T PRK14672 453 IPTLIEGFDISHLGG----KYTVASLICFKN-GAPDTKNYRLFNLRAH-DTRIDDF--------------ASMREAIARR 512 (691)
T ss_pred CCCeEEEEECCccCC----cCceEEEEEEEC-CccChhhCCeeeccCC-CCCCchH--------------HHHHHHHHHH
Confidence 478999999999753 346777887666 3222 11122222211 0113454 3445555444
Q ss_pred HHhc---CCCCceEEEEecCCCchhHHHHHHHHHHHHHHHHHhhcCCCCCCEEEEEEeecccCccCcC
Q 008882 345 RRST---NLKPHRIIFYRDGVGEGQFSQVLLHEMSAIRQACASLEEGYAPPVTFVVVQKRHHTRLFPA 409 (550)
Q Consensus 345 ~~~~---~~~P~~IIiyRdGvsegq~~~v~~~Ev~~i~~a~~~~~~~y~P~it~Ivv~Krh~~Rff~~ 409 (550)
.+.. ..+|+-||| || +.||+ .+.++++.+++. .|.+|.+.|+. ..+|..
T Consensus 513 ~~r~~~~~~~PDLilI--DG-GkgQl--------~aa~~vl~elgl----~i~vigLaKr~-e~i~~~ 564 (691)
T PRK14672 513 YTHTPEGYTLPDLILV--DG-GIGHV--------SAAQHVLDALGL----SIPLVGLAKRA-EELFIP 564 (691)
T ss_pred hhcccccCCCCCEEEE--eC-CHHHH--------HHHHHHHHHcCC----CCcEEEEEecc-cEEEeC
Confidence 4321 258998877 66 34554 455777777732 46788899965 445543
No 34
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=67.51 E-value=28 Score=36.27 Aligned_cols=73 Identities=16% Similarity=0.142 Sum_probs=49.1
Q ss_pred hHHHHHHHHHHHHhhhcCCCceEEEEEeCCCCCh--hHHHHHHhhhhcCceeeeecccccccCChhhHHHHHHHHHH
Q 008882 169 NQIEKALVDVHNRTTQQGKQLQLLIIILPDVSGS--YGRIKRVCETELGIVSQCCQPRQASRLNIPYFENVALKINV 243 (550)
Q Consensus 169 ~~ve~~L~~i~~~~~~~~~~~~lvlvIlp~~~~~--Y~~IK~~~~~~~GI~TQ~I~~~t~~k~~~~~~~Ni~lKINa 243 (550)
+.+.+.|++.....+.++..|.|+++...+...+ |...|...+.+.||.+-.+.... .....-+.+++.++|.
T Consensus 14 ~~i~~~lk~~i~~l~~~g~~P~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~--~~t~~~l~~~I~~lN~ 88 (301)
T PRK14194 14 ARVLAQVREDVRTLKAAGIEPALAVILVGNDPASQVYVRNKILRAEEAGIRSLEHRLPA--DTSQARLLALIAELNA 88 (301)
T ss_pred HHHHHHHHHHHHHHHhCCCCCeEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCC--CCCHHHHHHHHHHHcC
Confidence 3444555554444433345789988888877665 99999888889999998876542 1233445677777875
No 35
>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=66.89 E-value=30 Score=35.65 Aligned_cols=74 Identities=22% Similarity=0.197 Sum_probs=48.8
Q ss_pred hHHHHHHHHHHHHhhhcCCCceEEEEEeCCCCCh--hHHHHHHhhhhcCceeeeecccccccCChhhHHHHHHHHHHh
Q 008882 169 NQIEKALVDVHNRTTQQGKQLQLLIIILPDVSGS--YGRIKRVCETELGIVSQCCQPRQASRLNIPYFENVALKINVK 244 (550)
Q Consensus 169 ~~ve~~L~~i~~~~~~~~~~~~lvlvIlp~~~~~--Y~~IK~~~~~~~GI~TQ~I~~~t~~k~~~~~~~Ni~lKINaK 244 (550)
..+.+.|.+..+..+.++..|.|+++...+...+ |...|...+.+.||.+..+.... .....-+.+.+.++|.-
T Consensus 13 ~~i~~~l~~~v~~l~~~g~~P~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~--~~t~~el~~~I~~lN~D 88 (284)
T PRK14193 13 DEIKADLAERVAALKEKGITPGLGTVLVGDDPGSQAYVRGKHRDCAEVGITSIRRDLPA--DATQEELNAVIDELNAD 88 (284)
T ss_pred HHHHHHHHHHHHHHHhCCCCceEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCC--CCCHHHHHHHHHHHhCC
Confidence 3444445444444333345788888877776655 99999888899999998887642 12233456777888755
No 36
>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=66.06 E-value=33 Score=35.53 Aligned_cols=74 Identities=20% Similarity=0.191 Sum_probs=49.2
Q ss_pred hHHHHHHHHHHHHhhhc-CCCceEEEEEeCCCCCh--hHHHHHHhhhhcCceeeeecccccccCChhhHHHHHHHHHHh
Q 008882 169 NQIEKALVDVHNRTTQQ-GKQLQLLIIILPDVSGS--YGRIKRVCETELGIVSQCCQPRQASRLNIPYFENVALKINVK 244 (550)
Q Consensus 169 ~~ve~~L~~i~~~~~~~-~~~~~lvlvIlp~~~~~--Y~~IK~~~~~~~GI~TQ~I~~~t~~k~~~~~~~Ni~lKINaK 244 (550)
+.+.+.|++.....+.+ +..|.|+++...+...+ |...|...+.+.||.+..+.... .....-+..++.++|.-
T Consensus 12 ~~i~~~lk~~v~~l~~~~g~~P~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~--~~~e~~l~~~I~~lN~d 88 (294)
T PRK14187 12 NDITEILATCIDDLKRQHNLFPCLIVILVGDDPASQLYVRNKQRKAEMLGLRSETILLPS--TISESSLIEKINELNND 88 (294)
T ss_pred HHHHHHHHHHHHHHHHccCCCCeEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCC--CCCHHHHHHHHHHHhCC
Confidence 34444454444443322 35688888888777665 99999888899999999987643 12333466778888754
No 37
>PRK00558 uvrC excinuclease ABC subunit C; Validated
Probab=65.19 E-value=39 Score=38.58 Aligned_cols=104 Identities=20% Similarity=0.210 Sum_probs=55.6
Q ss_pred CCeEEEEEeecCCCCCCCCCCcEEEEEEeecCCCCcc-eeeEEEeccCchhhhhhhhcccCCCCCCCchhHHHHHHHHHH
Q 008882 266 RPTIIFGSDVTHPQPGEDSSPSIAAVVASMDWPEVTK-YRGLVSAQAHNQEIIQDLYKSTQDPFGGSVHGGMIRELLIAF 344 (550)
Q Consensus 266 ~~tmIIGiDVsh~~~~~~~~pSi~avVaS~d~~~~~~-y~s~~~~Q~~~~e~i~~l~~~~~~~~~~~~~~~~~~~~L~~f 344 (550)
.+.-|-++|+||-.. .-.|+++|.-.| ....+ .+-.+.+.. .+-.+|+ ..|.+++.+.+..+
T Consensus 382 ~p~rIE~fDiSh~~G----~~~V~smVvf~~-G~~~k~~YR~f~i~~--~~~~dDy----------a~m~Evl~RR~~~~ 444 (598)
T PRK00558 382 PPYRIECFDISHIQG----TATVASMVVFED-GGPDKSEYRRYNIKG--VTGGDDY----------AAMREVLTRRYSRL 444 (598)
T ss_pred CCCEEEEEECCccCC----CcceEEEEEEEC-CccChhhCCeeecCC--CCCCCHH----------HHHHHHHHHHhhcc
Confidence 467899999999753 456777777666 32221 111122221 1112443 12234443333322
Q ss_pred HHhcCCCCceEEEEecCCCchhHHHHHHHHHHHHHHHHHhhcCCCCCCEEEEEEeec
Q 008882 345 RRSTNLKPHRIIFYRDGVGEGQFSQVLLHEMSAIRQACASLEEGYAPPVTFVVVQKR 401 (550)
Q Consensus 345 ~~~~~~~P~~IIiyRdGvsegq~~~v~~~Ev~~i~~a~~~~~~~y~P~it~Ivv~Kr 401 (550)
.+....+|+-||| || +.||+ .+..+++.+++- .|.+|.+.|.
T Consensus 445 ~~~~~~~PDLili--DG-GkgQl--------~~a~~~l~~lg~----~i~v~glaK~ 486 (598)
T PRK00558 445 LKEFGPLPDLILI--DG-GKGQL--------NAAKEVLEELGL----DIPVVGLAKG 486 (598)
T ss_pred ccccCCCCCEEEE--eC-CHHHH--------HHHHHHHHHCCC----CCcEEEEEec
Confidence 2112368998887 77 45665 445677776632 3667777774
No 38
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=64.74 E-value=33 Score=35.39 Aligned_cols=73 Identities=19% Similarity=0.195 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHhhhcCCCceEEEEEeCCCCCh--hHHHHHHhhhhcCceeeeecccccccCChhhHHHHHHHHHHh
Q 008882 170 QIEKALVDVHNRTTQQGKQLQLLIIILPDVSGS--YGRIKRVCETELGIVSQCCQPRQASRLNIPYFENVALKINVK 244 (550)
Q Consensus 170 ~ve~~L~~i~~~~~~~~~~~~lvlvIlp~~~~~--Y~~IK~~~~~~~GI~TQ~I~~~t~~k~~~~~~~Ni~lKINaK 244 (550)
.+.+.|++.....+.++..|.|+++...+...+ |...|...+.+.||.+..+.... .....-+.+.+.++|.-
T Consensus 12 ~i~~~l~~~v~~l~~~g~~P~Laii~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~--~~t~~~l~~~I~~lN~D 86 (282)
T PRK14166 12 KIKEELKEKNQFLKSKGIESCLAVILVGDNPASQTYVKSKAKACEECGIKSLVYHLNE--NTTQNELLALINTLNHD 86 (282)
T ss_pred HHHHHHHHHHHHHHhCCCCceEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCC--CCCHHHHHHHHHHHhCC
Confidence 344444444333332345788888887777655 99999888889999999987653 12233366777888753
No 39
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=64.74 E-value=35 Score=35.15 Aligned_cols=73 Identities=16% Similarity=0.160 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHhhhcCCCceEEEEEeCCCCCh--hHHHHHHhhhhcCceeeeecccccccCChhhHHHHHHHHHHh
Q 008882 170 QIEKALVDVHNRTTQQGKQLQLLIIILPDVSGS--YGRIKRVCETELGIVSQCCQPRQASRLNIPYFENVALKINVK 244 (550)
Q Consensus 170 ~ve~~L~~i~~~~~~~~~~~~lvlvIlp~~~~~--Y~~IK~~~~~~~GI~TQ~I~~~t~~k~~~~~~~Ni~lKINaK 244 (550)
.+.+.|.+.....+.++..|.|+++...+...+ |...|...+.+.||.+..+.... .....-+.+.+.++|.-
T Consensus 12 ~i~~~l~~~v~~l~~~g~~P~Laii~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~--~~~~~el~~~I~~lN~D 86 (282)
T PRK14169 12 KILADLKQTVAKLAQQDVTPTLAVVLVGSDPASEVYVRNKQRRAEDIGVRSLMFRLPE--ATTQADLLAKVAELNHD 86 (282)
T ss_pred HHHHHHHHHHHHHHhCCCCCeEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCC--CCCHHHHHHHHHHHhCC
Confidence 344444444444333345788888888777655 99999888899999998887643 12233456778888763
No 40
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=64.12 E-value=43 Score=34.63 Aligned_cols=74 Identities=19% Similarity=0.170 Sum_probs=49.6
Q ss_pred hHHHHHHHHHHHHhhhc-CCCceEEEEEeCCCCCh--hHHHHHHhhhhcCceeeeecccccccCChhhHHHHHHHHHHh
Q 008882 169 NQIEKALVDVHNRTTQQ-GKQLQLLIIILPDVSGS--YGRIKRVCETELGIVSQCCQPRQASRLNIPYFENVALKINVK 244 (550)
Q Consensus 169 ~~ve~~L~~i~~~~~~~-~~~~~lvlvIlp~~~~~--Y~~IK~~~~~~~GI~TQ~I~~~t~~k~~~~~~~Ni~lKINaK 244 (550)
+.+.+.|.+.....+.+ +..|.|+++...+...+ |...|...+.+.||.+-.+.... .....-+.+++.++|.-
T Consensus 18 ~~i~~~l~~~i~~l~~~~g~~P~Laii~vg~d~aS~~Yv~~k~k~~~~~Gi~~~~~~l~~--~~~~~el~~~I~~LN~D 94 (287)
T PRK14176 18 KKIEAEVRSGVERLKSNRGITPGLATILVGDDPASKMYVRLKHKACERVGIRAEDQFLPA--DTTQEELLELIDSLNKR 94 (287)
T ss_pred HHHHHHHHHHHHHHHhccCCCCeEEEEEECCCcchHHHHHHHHHHHHHcCCEEEEEECCC--CCCHHHHHHHHHHHhCC
Confidence 34444555444443332 45788988888777665 99999888899999998887643 12344466788888854
No 41
>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=63.87 E-value=33 Score=35.58 Aligned_cols=73 Identities=19% Similarity=0.174 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHhhhc-CCCceEEEEEeCCCCCh--hHHHHHHhhhhcCceeeeecccccccCChhhHHHHHHHHHHh
Q 008882 170 QIEKALVDVHNRTTQQ-GKQLQLLIIILPDVSGS--YGRIKRVCETELGIVSQCCQPRQASRLNIPYFENVALKINVK 244 (550)
Q Consensus 170 ~ve~~L~~i~~~~~~~-~~~~~lvlvIlp~~~~~--Y~~IK~~~~~~~GI~TQ~I~~~t~~k~~~~~~~Ni~lKINaK 244 (550)
.+.+.|++.....+.+ +..|.|+++...+...+ |...|...+.+.||.+..+.... .....-+.+++.++|.-
T Consensus 12 ~i~~~l~~~v~~l~~~~g~~P~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~--~~~~~el~~~I~~lN~D 87 (293)
T PRK14185 12 QIKQEIAAEVAEIVAKGGKRPHLAAILVGHDGGSETYVANKVKACEECGFKSSLIRYES--DVTEEELLAKVRELNQD 87 (293)
T ss_pred HHHHHHHHHHHHHHhccCCCCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCC--CCCHHHHHHHHHHHhCC
Confidence 3444444444433322 45788988888777655 99999888899999999887643 12233456777788753
No 42
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=63.61 E-value=37 Score=34.93 Aligned_cols=73 Identities=15% Similarity=0.151 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHhhh-cCCCceEEEEEeCCCCCh--hHHHHHHhhhhcCceeeeecccccccCChhhHHHHHHHHHHh
Q 008882 170 QIEKALVDVHNRTTQ-QGKQLQLLIIILPDVSGS--YGRIKRVCETELGIVSQCCQPRQASRLNIPYFENVALKINVK 244 (550)
Q Consensus 170 ~ve~~L~~i~~~~~~-~~~~~~lvlvIlp~~~~~--Y~~IK~~~~~~~GI~TQ~I~~~t~~k~~~~~~~Ni~lKINaK 244 (550)
.+.+.|++.....+. ++..|.|+++...+...+ |...|...+.+.||.+..+.... .....-+.+.+.++|.-
T Consensus 12 ~i~~~l~~~v~~l~~~~g~~P~Laii~vgdd~as~~Yv~~k~k~a~~~Gi~~~~~~l~~--~~~~~~l~~~I~~lN~D 87 (281)
T PRK14183 12 KIKENVKKEVDELKLVKNIVPGLAVILVGDDPASHTYVKMKAKACDRVGIYSITHEMPS--TISQKEILETIAMMNNN 87 (281)
T ss_pred HHHHHHHHHHHHHHhcCCCCCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCC--CCCHHHHHHHHHHHhCC
Confidence 344444444443322 235788888888776655 99999888899999998886542 12333466778888743
No 43
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=63.58 E-value=37 Score=34.99 Aligned_cols=73 Identities=16% Similarity=0.161 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHhhhc-CCCceEEEEEeCCCCCh--hHHHHHHhhhhcCceeeeecccccccCChhhHHHHHHHHHHh
Q 008882 170 QIEKALVDVHNRTTQQ-GKQLQLLIIILPDVSGS--YGRIKRVCETELGIVSQCCQPRQASRLNIPYFENVALKINVK 244 (550)
Q Consensus 170 ~ve~~L~~i~~~~~~~-~~~~~lvlvIlp~~~~~--Y~~IK~~~~~~~GI~TQ~I~~~t~~k~~~~~~~Ni~lKINaK 244 (550)
.+.+.|++.....+.+ +..|.|+++...+...+ |...|...+.+.||.+..+.... .....-+.+++.++|.-
T Consensus 12 ~i~~~lk~~v~~~~~~~g~~P~La~I~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~--~~~~~el~~~I~~lN~D 87 (282)
T PRK14180 12 DLKERLATQVQEYKHHTAITPKLVAIIVGNDPASKTYVASKEKACAQVGIDSQVITLPE--HTTESELLELIDQLNND 87 (282)
T ss_pred HHHHHHHHHHHHHHhccCCCCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCC--CCCHHHHHHHHHHHhCC
Confidence 3444444444443322 35788888888776655 99998888889999999887653 12233466778888744
No 44
>PRK14666 uvrC excinuclease ABC subunit C; Provisional
Probab=63.52 E-value=67 Score=37.23 Aligned_cols=100 Identities=20% Similarity=0.186 Sum_probs=56.3
Q ss_pred CCeEEEEEeecCCCCCCCCCCcEEEEEEeecCCCCcc-eeeEEEeccCchhhhhhhhcccCCCCCCCchhHHHHHHHHHH
Q 008882 266 RPTIIFGSDVTHPQPGEDSSPSIAAVVASMDWPEVTK-YRGLVSAQAHNQEIIQDLYKSTQDPFGGSVHGGMIRELLIAF 344 (550)
Q Consensus 266 ~~tmIIGiDVsh~~~~~~~~pSi~avVaS~d~~~~~~-y~s~~~~Q~~~~e~i~~l~~~~~~~~~~~~~~~~~~~~L~~f 344 (550)
.+.-|-++|+||-.. .-.++++|.-.| ....+ .+-.+.+... + .+|+ .+|.+.|...
T Consensus 471 ~p~rIE~~DiSh~~G----~~~v~~mVvf~~-G~p~k~~YR~f~i~~~--~-~dD~--------------~~m~ev~~RR 528 (694)
T PRK14666 471 PPHRIEAVDVSHTGG----RNTRVGMVVFED-GKPARDAYRTYAFEDG--E-GDDY--------------GTLAAWAGRR 528 (694)
T ss_pred CCCEEEEEECcccCC----cCceEEEEEEEC-CccChhhCCeeeCCCC--C-CChH--------------HHHHHHHHHH
Confidence 467899999999753 456777777666 33322 1112222111 1 1443 3444555444
Q ss_pred HHhcCCCCceEEEEecCCCchhHHHHHHHHHHHHHHHHHhhcCCCCCCEEEEEEee
Q 008882 345 RRSTNLKPHRIIFYRDGVGEGQFSQVLLHEMSAIRQACASLEEGYAPPVTFVVVQK 400 (550)
Q Consensus 345 ~~~~~~~P~~IIiyRdGvsegq~~~v~~~Ev~~i~~a~~~~~~~y~P~it~Ivv~K 400 (550)
.+....+|+-||| || +.||+ .+..+++.+++. ...|.+|.+.|
T Consensus 529 ~~~~~~~PDLili--DG-G~gQl--------~aa~~~l~e~g~--~~~~~v~~laK 571 (694)
T PRK14666 529 VESGPPWPDLLLV--DG-GRGQL--------AAVVRALEEAGM--GGLFAVASIAK 571 (694)
T ss_pred hcCCCCCCCEEEE--cC-CHHHH--------HHHHHHHHHcCC--CCCccEEEEec
Confidence 4322358987776 76 45564 455777777643 22367888888
No 45
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=62.50 E-value=40 Score=34.74 Aligned_cols=82 Identities=22% Similarity=0.173 Sum_probs=54.9
Q ss_pred hHHHHHHHHHHHHhhhc-CCCceEEEEEeCCCCCh--hHHHHHHhhhhcCceeeeecccccccCChhhHHHHHHHHHHh-
Q 008882 169 NQIEKALVDVHNRTTQQ-GKQLQLLIIILPDVSGS--YGRIKRVCETELGIVSQCCQPRQASRLNIPYFENVALKINVK- 244 (550)
Q Consensus 169 ~~ve~~L~~i~~~~~~~-~~~~~lvlvIlp~~~~~--Y~~IK~~~~~~~GI~TQ~I~~~t~~k~~~~~~~Ni~lKINaK- 244 (550)
+.+.+.|++.....+.+ +..|.|+++...+...+ |..+|...+.+.||.+..+.... .....-+.+++.++|..
T Consensus 13 ~~i~~~~~~~i~~~~~~~~~~p~L~~i~vg~~~~s~~Y~~~~~~~~~~~Gi~~~~~~l~~--~~~~~~l~~~i~~Ln~d~ 90 (283)
T PRK14192 13 KQIEEELSVRVEALKAKTGRTPILATILVGDDPASATYVRMKGNACRRVGMDSLKVELPQ--ETTTEQLLAKIEELNANP 90 (283)
T ss_pred HHHHHHHHHHHHHHHhccCCCCeEEEEEeCCChhHHHHHHHHHHHHHHcCCeEEEEECCC--CCCHHHHHHHHHHHhCCC
Confidence 34444444444433322 35688888888777665 99999888899999999887732 11233477888899876
Q ss_pred -cCCcceee
Q 008882 245 -VGGRNTVL 252 (550)
Q Consensus 245 -lGG~n~~l 252 (550)
.-|+|..+
T Consensus 91 ~v~Gi~Vql 99 (283)
T PRK14192 91 DVHGILLQH 99 (283)
T ss_pred CCCEEEEeC
Confidence 56777543
No 46
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=62.10 E-value=39 Score=34.88 Aligned_cols=73 Identities=19% Similarity=0.243 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHhhhcCCCceEEEEEeCCCCCh--hHHHHHHhhhhcCceeeeecccccccCChhhHHHHHHHHHHh
Q 008882 170 QIEKALVDVHNRTTQQGKQLQLLIIILPDVSGS--YGRIKRVCETELGIVSQCCQPRQASRLNIPYFENVALKINVK 244 (550)
Q Consensus 170 ~ve~~L~~i~~~~~~~~~~~~lvlvIlp~~~~~--Y~~IK~~~~~~~GI~TQ~I~~~t~~k~~~~~~~Ni~lKINaK 244 (550)
.+.+.+++.....+.++..|.|+++..-+...+ |...|...+.+.||.+-.+.... .....-+.+.+.++|.-
T Consensus 13 ~i~~~ik~~i~~l~~~g~~P~Laii~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~--~~~~~el~~~I~~lN~D 87 (284)
T PRK14170 13 EIQEKVTREVAELVKEGKKPGLAVVLVGDNQASRTYVRNKQKRTEEAGMKSVLIELPE--NVTEEKLLSVVEELNED 87 (284)
T ss_pred HHHHHHHHHHHHHHhCCCCCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCC--CCCHHHHHHHHHHHhCC
Confidence 344444444443333345788888888777655 99999888889999998887643 12233355777888753
No 47
>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=62.05 E-value=40 Score=34.78 Aligned_cols=73 Identities=19% Similarity=0.175 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHhhhcCCCceEEEEEeCCCCCh--hHHHHHHhhhhcCceeeeecccccccCChhhHHHHHHHHHHh
Q 008882 170 QIEKALVDVHNRTTQQGKQLQLLIIILPDVSGS--YGRIKRVCETELGIVSQCCQPRQASRLNIPYFENVALKINVK 244 (550)
Q Consensus 170 ~ve~~L~~i~~~~~~~~~~~~lvlvIlp~~~~~--Y~~IK~~~~~~~GI~TQ~I~~~t~~k~~~~~~~Ni~lKINaK 244 (550)
.+.+.|++..+..+.++..|.|+++...+...+ |...|...+.+.||.+-.+.... .....-+.+.+.++|.-
T Consensus 12 ~i~~~ik~~v~~l~~~g~~P~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~--~~t~~~l~~~I~~lN~d 86 (282)
T PRK14182 12 KVKGEVATEVRALAARGVQTGLTVVRVGDDPASAIYVRGKRKDCEEVGITSVEHHLPA--TTTQAELLALIARLNAD 86 (282)
T ss_pred HHHHHHHHHHHHHHhCCCCCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCC--CCCHHHHHHHHHHHhCC
Confidence 444445444444333345788888888877665 99998888889999998887642 12334466777788753
No 48
>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=61.41 E-value=45 Score=34.45 Aligned_cols=72 Identities=17% Similarity=0.138 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHhhhc-CCCceEEEEEeCCCCCh--hHHHHHHhhhhcCceeeeecccccccCChhhHHHHHHHHHHh
Q 008882 171 IEKALVDVHNRTTQQ-GKQLQLLIIILPDVSGS--YGRIKRVCETELGIVSQCCQPRQASRLNIPYFENVALKINVK 244 (550)
Q Consensus 171 ve~~L~~i~~~~~~~-~~~~~lvlvIlp~~~~~--Y~~IK~~~~~~~GI~TQ~I~~~t~~k~~~~~~~Ni~lKINaK 244 (550)
+.+.|++.....+.+ +..|.|+++...+...+ |...|...+.+.||.+..+.... .....-+.+.+.++|.-
T Consensus 14 i~~~lk~~v~~l~~~~g~~P~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~--~~~~~~l~~~I~~LN~D 88 (288)
T PRK14171 14 ILADLKLEIQELKSQTNASPKLAIVLVGDNPASIIYVKNKIKNAHKIGIDTLLVNLST--TIHTNDLISKINELNLD 88 (288)
T ss_pred HHHHHHHHHHHHHhccCCCCeEEEEEeCCCccHHHHHHHHHHHHHHcCCEEEEEECCC--CCCHHHHHHHHHHHcCC
Confidence 334444433333222 35688888777776655 99888777889999998887642 12334466777777744
No 49
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=61.32 E-value=42 Score=34.60 Aligned_cols=74 Identities=19% Similarity=0.216 Sum_probs=48.6
Q ss_pred hHHHHHHHHHHHHhhhcCCCceEEEEEeCCCCCh--hHHHHHHhhhhcCceeeeecccccccCChhhHHHHHHHHHHh
Q 008882 169 NQIEKALVDVHNRTTQQGKQLQLLIIILPDVSGS--YGRIKRVCETELGIVSQCCQPRQASRLNIPYFENVALKINVK 244 (550)
Q Consensus 169 ~~ve~~L~~i~~~~~~~~~~~~lvlvIlp~~~~~--Y~~IK~~~~~~~GI~TQ~I~~~t~~k~~~~~~~Ni~lKINaK 244 (550)
+.+.+.|.+.....+.++..|.|+++...+...+ |.+.|...+.+.||.+..+.... .....-+.+.+.++|.-
T Consensus 13 ~~i~~~l~~~v~~l~~~g~~P~Laii~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~--~~~~~el~~~I~~lN~D 88 (284)
T PRK14190 13 KEKREQLKEEVVKLKEQGIVPGLAVILVGDDPASHSYVRGKKKAAEKVGIYSELYEFPA--DITEEELLALIDRLNAD 88 (284)
T ss_pred HHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCC--CCCHHHHHHHHHHHhCC
Confidence 3444445444444333345788888877766555 99998888889999998887643 12233466777888765
No 50
>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=60.81 E-value=44 Score=34.69 Aligned_cols=73 Identities=19% Similarity=0.195 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHhhhcCCCceEEEEEeCCCCCh--hHHHHHHhhhhcCceeeeecccccccCChhhHHHHHHHHHHh
Q 008882 170 QIEKALVDVHNRTTQQGKQLQLLIIILPDVSGS--YGRIKRVCETELGIVSQCCQPRQASRLNIPYFENVALKINVK 244 (550)
Q Consensus 170 ~ve~~L~~i~~~~~~~~~~~~lvlvIlp~~~~~--Y~~IK~~~~~~~GI~TQ~I~~~t~~k~~~~~~~Ni~lKINaK 244 (550)
.+.+.|.+.....+..+..|.|+++...+...+ |...|...+.+.||.+-.+.... .....-+.+++.++|.-
T Consensus 13 ~i~~~l~~~v~~l~~~g~~P~LaiI~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~--~~~~~el~~~I~~lN~D 87 (297)
T PRK14167 13 QIRDDLTDAIETLEDAGVTPGLATVLMSDDPASETYVSMKQRDCEEVGIEAIDVEIDP--DAPAEELYDTIDELNAD 87 (297)
T ss_pred HHHHHHHHHHHHHHhCCCCceEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCC--CCCHHHHHHHHHHHhCC
Confidence 344444443333333345788888888776655 99999888899999998876642 12233466778888754
No 51
>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=60.32 E-value=48 Score=34.25 Aligned_cols=72 Identities=22% Similarity=0.275 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHhhhc-CCCceEEEEEeCCCCCh--hHHHHHHhhhhcCceeeeecccccccCChhhHHHHHHHHHH
Q 008882 170 QIEKALVDVHNRTTQQ-GKQLQLLIIILPDVSGS--YGRIKRVCETELGIVSQCCQPRQASRLNIPYFENVALKINV 243 (550)
Q Consensus 170 ~ve~~L~~i~~~~~~~-~~~~~lvlvIlp~~~~~--Y~~IK~~~~~~~GI~TQ~I~~~t~~k~~~~~~~Ni~lKINa 243 (550)
.+.+.|++.....+.+ +..|.|+++...+...+ |...|...+.+.||.+..+.... .....-+.+++.++|.
T Consensus 12 ~i~~~l~~~v~~l~~~~g~~P~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~--~~~~~~l~~~I~~lN~ 86 (286)
T PRK14184 12 TIREELKTEVAALTARHGRAPGLAVILVGEDPASQVYVRNKERACEDAGIVSEAFRLPA--DTTQEELEDLIAELNA 86 (286)
T ss_pred HHHHHHHHHHHHHHhccCCCCEEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCC--CCCHHHHHHHHHHHhC
Confidence 3344444444333322 35688888887777655 99998888889999999887542 1233446678888885
No 52
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=59.99 E-value=43 Score=34.57 Aligned_cols=72 Identities=18% Similarity=0.246 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHhhhcCCCceEEEEEeCCCCCh--hHHHHHHhhhhcCceeeeecccccccCChhhHHHHHHHHHH
Q 008882 170 QIEKALVDVHNRTTQQGKQLQLLIIILPDVSGS--YGRIKRVCETELGIVSQCCQPRQASRLNIPYFENVALKINV 243 (550)
Q Consensus 170 ~ve~~L~~i~~~~~~~~~~~~lvlvIlp~~~~~--Y~~IK~~~~~~~GI~TQ~I~~~t~~k~~~~~~~Ni~lKINa 243 (550)
.+.+.|++.....+.++..|.|+++...+...+ |...|...+.+.||.+-.+.... .....-+.+.+.++|.
T Consensus 14 ~i~~~~~~~v~~l~~~g~~p~Laii~vg~~~as~~Yv~~k~k~a~~~Gi~~~~~~l~~--~~~~~~l~~~I~~lN~ 87 (286)
T PRK14175 14 DYRQGLQDQVEALKEKGFTPKLSVILVGNDGASQSYVRSKKKAAEKIGMISEIVHLEE--TATEEEVLNELNRLNN 87 (286)
T ss_pred HHHHHHHHHHHHHHhcCCCCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCC--CCCHHHHHHHHHHHhC
Confidence 344444444443333345788888888777655 99999888899999998887643 1223345677788874
No 53
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=59.49 E-value=51 Score=34.01 Aligned_cols=73 Identities=21% Similarity=0.130 Sum_probs=48.1
Q ss_pred hHHHHHHHHHHHHhhhcCCCceEEEEEeCCCCCh--hHHHHHHhhhhcCceeeeecccccccCChhhHHHHHHHHHH
Q 008882 169 NQIEKALVDVHNRTTQQGKQLQLLIIILPDVSGS--YGRIKRVCETELGIVSQCCQPRQASRLNIPYFENVALKINV 243 (550)
Q Consensus 169 ~~ve~~L~~i~~~~~~~~~~~~lvlvIlp~~~~~--Y~~IK~~~~~~~GI~TQ~I~~~t~~k~~~~~~~Ni~lKINa 243 (550)
+.+.+.|.+.....+.++..|.|+++...+...+ |...|...+.+.||.+-.+.... .....-+.+++.++|.
T Consensus 13 ~~i~~~lk~~i~~l~~~g~~p~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~--~~~~~~l~~~I~~lN~ 87 (285)
T PRK14189 13 KQLRAEAAQRAAALTARGHQPGLAVILVGDNPASQVYVRNKVKACEDNGFHSLKDRYPA--DLSEAELLARIDELNR 87 (285)
T ss_pred HHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCchHHHHHHHHHHHHHHcCCEEEEEECCC--CCCHHHHHHHHHHHcC
Confidence 3444455544444333345788888888777665 99999888889999998877542 1233445677778875
No 54
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=59.39 E-value=50 Score=34.28 Aligned_cols=73 Identities=15% Similarity=0.165 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHhhhc-CCCceEEEEEeCCCCCh--hHHHHHHhhhhcCceeeeecccccccCChhhHHHHHHHHHHh
Q 008882 170 QIEKALVDVHNRTTQQ-GKQLQLLIIILPDVSGS--YGRIKRVCETELGIVSQCCQPRQASRLNIPYFENVALKINVK 244 (550)
Q Consensus 170 ~ve~~L~~i~~~~~~~-~~~~~lvlvIlp~~~~~--Y~~IK~~~~~~~GI~TQ~I~~~t~~k~~~~~~~Ni~lKINaK 244 (550)
.+.+.|++.....+.+ +..|.|+++...+...+ |...|...+.+.||.+-.+.... .....-+.+++.++|.-
T Consensus 13 ~i~~~i~~~v~~l~~~~g~~p~La~i~vg~~~~s~~Yv~~k~k~a~~~Gi~~~~~~l~~--~~~~~el~~~i~~lN~d 88 (296)
T PRK14188 13 DVRATVAAEVARLKAAHGVTPGLAVVLVGEDPASQVYVRSKGKQTKEAGMASFEHKLPA--DTSQAELLALIARLNAD 88 (296)
T ss_pred HHHHHHHHHHHHHHHccCCCCeEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCC--CCCHHHHHHHHHHHhCC
Confidence 3444444444433322 35788988888877665 99998888889999988776542 12233456788888765
No 55
>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=59.14 E-value=48 Score=34.38 Aligned_cols=73 Identities=19% Similarity=0.167 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHhhhc-CCCceEEEEEeCCCCCh--hHHHHHHhhhhcCceeeeecccccccCChhhHHHHHHHHHHh
Q 008882 170 QIEKALVDVHNRTTQQ-GKQLQLLIIILPDVSGS--YGRIKRVCETELGIVSQCCQPRQASRLNIPYFENVALKINVK 244 (550)
Q Consensus 170 ~ve~~L~~i~~~~~~~-~~~~~lvlvIlp~~~~~--Y~~IK~~~~~~~GI~TQ~I~~~t~~k~~~~~~~Ni~lKINaK 244 (550)
.+.+.|.+.....+.+ +..|.|+++...+...+ |.+.|...+.+.||.+-.+.... .....-+.+.+.++|.-
T Consensus 12 ~i~~~i~~~v~~l~~~~g~~P~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~--~~~~~el~~~I~~lN~D 87 (295)
T PRK14174 12 DLKNELKTRVEAYRAKTGKVPGLTVIIVGEDPASQVYVRNKAKSCKEIGMNSTVIELPA--DTTEEHLLKKIEDLNND 87 (295)
T ss_pred HHHHHHHHHHHHHHHccCCCCeEEEEEeCCChHHHHHHHHHHHHHHHcCCEEEEEECCC--CCCHHHHHHHHHHHhCC
Confidence 3344444443333222 35788988888877665 99999888899999998887643 12233466777888754
No 56
>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)
Probab=58.84 E-value=54 Score=34.13 Aligned_cols=73 Identities=19% Similarity=0.256 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHhhhc-CCCceEEEEEeCCCCCh--hHHHHHHhhhhcCceeeeecccccccCChhhHHHHHHHHHHh
Q 008882 170 QIEKALVDVHNRTTQQ-GKQLQLLIIILPDVSGS--YGRIKRVCETELGIVSQCCQPRQASRLNIPYFENVALKINVK 244 (550)
Q Consensus 170 ~ve~~L~~i~~~~~~~-~~~~~lvlvIlp~~~~~--Y~~IK~~~~~~~GI~TQ~I~~~t~~k~~~~~~~Ni~lKINaK 244 (550)
.+.+.|.+.....+.+ +..|.|+++...+...+ |...|...+.+.||.+-.+.... .....-+...+.++|.-
T Consensus 20 ~i~~~l~~~v~~l~~~~g~~P~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~--~~s~~el~~~I~~lN~D 95 (299)
T PLN02516 20 AIRSEIAEEVAQLSEKHGKVPGLAVVIVGSRKDSQTYVNMKRKACAEVGIKSFDVDLPE--NISEAELISKVHELNAN 95 (299)
T ss_pred HHHHHHHHHHHHHHHcCCCCCeEEEEEECCChhHHHHHHHHHHHHHHcCCEEEEEECCC--CCCHHHHHHHHHHHhCC
Confidence 3444444444333322 45788888877776655 99999888889999998887642 12333456777788754
No 57
>KOG3915 consensus Transcription regulator dachshund, contains SKI/SNO domain [Transcription]
Probab=58.21 E-value=32 Score=37.38 Aligned_cols=10 Identities=20% Similarity=0.338 Sum_probs=4.3
Q ss_pred hhHHHHHHHH
Q 008882 168 PNQIEKALVD 177 (550)
Q Consensus 168 ~~~ve~~L~~ 177 (550)
++.++-+|+.
T Consensus 201 PQafdlFLKh 210 (641)
T KOG3915|consen 201 PQAFDLFLKH 210 (641)
T ss_pred HHHHHHHHHH
Confidence 3444444444
No 58
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=57.94 E-value=52 Score=34.19 Aligned_cols=74 Identities=20% Similarity=0.193 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHhhhc-CCCceEEEEEeCCCCCh--hHHHHHHhhhhcCceeeeecccccccCChhhHHHHHHHHHHhc
Q 008882 170 QIEKALVDVHNRTTQQ-GKQLQLLIIILPDVSGS--YGRIKRVCETELGIVSQCCQPRQASRLNIPYFENVALKINVKV 245 (550)
Q Consensus 170 ~ve~~L~~i~~~~~~~-~~~~~lvlvIlp~~~~~--Y~~IK~~~~~~~GI~TQ~I~~~t~~k~~~~~~~Ni~lKINaKl 245 (550)
.+.+.|++.....+.+ +..|.|+++...+...+ |...|...+.+.||.+-.+.... .....-+.+++.++|.--
T Consensus 13 ~i~~~lk~~v~~l~~~~g~~p~LaiI~vgdd~as~~Yv~~k~k~a~~~Gi~~~~~~l~~--~~~~~el~~~I~~lN~D~ 89 (297)
T PRK14186 13 EIEQRLQAQIESNLPKAGRPPGLAVLRVGDDPASAVYVRNKEKACARVGIASFGKHLPA--DTSQAEVEALIAQLNQDE 89 (297)
T ss_pred HHHHHHHHHHHHHHHhcCCCceEEEEEeCCChHHHHHHHHHHHHHHHcCCEEEEEECCC--CCCHHHHHHHHHHHhCCC
Confidence 3444444444333222 35688888888776555 99999888899999998887642 123344667888888643
No 59
>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=57.89 E-value=51 Score=34.24 Aligned_cols=74 Identities=16% Similarity=0.140 Sum_probs=48.1
Q ss_pred hHHHHHHHHHHHHhhhc-CCCceEEEEEeCCCCCh--hHHHHHHhhhhcCceeeeecccccccCChhhHHHHHHHHHHh
Q 008882 169 NQIEKALVDVHNRTTQQ-GKQLQLLIIILPDVSGS--YGRIKRVCETELGIVSQCCQPRQASRLNIPYFENVALKINVK 244 (550)
Q Consensus 169 ~~ve~~L~~i~~~~~~~-~~~~~lvlvIlp~~~~~--Y~~IK~~~~~~~GI~TQ~I~~~t~~k~~~~~~~Ni~lKINaK 244 (550)
+.+.+.|++.....+.+ +..|.|+++..-+...+ |...|...+.+.||.+-.+.... .....-+..++.++|.-
T Consensus 13 ~~i~~~lk~~v~~l~~~~g~~P~LaiI~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~--~~t~~el~~~I~~lN~D 89 (297)
T PRK14168 13 EEILEEIRGEVAELKEKYGKVPGLVTILVGESPASLSYVTLKIKTAHRLGFHEIQDNQSV--DITEEELLALIDKYNND 89 (297)
T ss_pred HHHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCC--CCCHHHHHHHHHHHhCC
Confidence 34444555444443322 45788888888777655 99999888899999987776532 12333456777888753
No 60
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=57.41 E-value=52 Score=33.99 Aligned_cols=74 Identities=15% Similarity=0.166 Sum_probs=48.4
Q ss_pred hHHHHHHHHHHHHhhhc-CCCceEEEEEeCCCCCh--hHHHHHHhhhhcCceeeeecccccccCChhhHHHHHHHHHHh
Q 008882 169 NQIEKALVDVHNRTTQQ-GKQLQLLIIILPDVSGS--YGRIKRVCETELGIVSQCCQPRQASRLNIPYFENVALKINVK 244 (550)
Q Consensus 169 ~~ve~~L~~i~~~~~~~-~~~~~lvlvIlp~~~~~--Y~~IK~~~~~~~GI~TQ~I~~~t~~k~~~~~~~Ni~lKINaK 244 (550)
+.+.+.|++.....+.+ +..|.|+++...+...+ |...|...+.+.||.+..+.... .....-+.+.+.++|..
T Consensus 13 ~~i~~~lk~~v~~l~~~~~~~P~Laii~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~--~~s~~el~~~I~~lN~d 89 (285)
T PRK10792 13 QQVRSEVAQKVQARVAAGLRAPGLAVVLVGSDPASQVYVASKRKACEEVGFVSRSYDLPE--TTSEAELLALIDELNAD 89 (285)
T ss_pred HHHHHHHHHHHHHHHHcCCCCceEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCC--CCCHHHHHHHHHHHhCC
Confidence 34444454444443322 34588888877776555 99999888889999999887642 12333456777888865
No 61
>PF12764 Gly-rich_Ago1: Glycine-rich region of argonaut; InterPro: IPR024357 This domain is found in the N terminus of some argonaut proteins. Argonaut (AGO) proteins are involved in RNA-mediated post-transcriptional gene silencing [].
Probab=57.20 E-value=89 Score=27.07 Aligned_cols=9 Identities=11% Similarity=0.213 Sum_probs=3.4
Q ss_pred chhhHHHHH
Q 008882 89 VSTLVEETE 97 (550)
Q Consensus 89 ~~~~~~~~~ 97 (550)
+..++++|.
T Consensus 80 v~QQfqqLs 88 (104)
T PF12764_consen 80 VTQQFQQLS 88 (104)
T ss_pred HHHHHHHHh
Confidence 333333333
No 62
>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=57.00 E-value=53 Score=34.80 Aligned_cols=74 Identities=19% Similarity=0.171 Sum_probs=48.8
Q ss_pred hHHHHHHHHHHHHhhhc-CCCceEEEEEeCCCCCh--hHHHHHHhhhhcCceeeeecccccccCChhhHHHHHHHHHHh
Q 008882 169 NQIEKALVDVHNRTTQQ-GKQLQLLIIILPDVSGS--YGRIKRVCETELGIVSQCCQPRQASRLNIPYFENVALKINVK 244 (550)
Q Consensus 169 ~~ve~~L~~i~~~~~~~-~~~~~lvlvIlp~~~~~--Y~~IK~~~~~~~GI~TQ~I~~~t~~k~~~~~~~Ni~lKINaK 244 (550)
+.+.+.|.+.....+.+ +..|.|+++.+.++..+ |...|...+.+.||.+..+.... .....-+..++.++|.-
T Consensus 66 ~~i~~~lk~~v~~l~~~~g~~P~LaiIlvGddpaS~~Yv~~k~K~a~~~GI~~~~~~l~~--~~te~ell~~I~~lN~D 142 (345)
T PLN02897 66 EEIRTKIASEVRKMKKAVGKVPGLAVVLVGQQRDSQTYVRNKIKACEETGIKSLLAELPE--DCTEGQILSALRKFNED 142 (345)
T ss_pred HHHHHHHHHHHHHHHhccCCCCeEEEEEeCCChHHHHHHHHHHHHHHhcCCEEEEEECCC--CCCHHHHHHHHHHHhCC
Confidence 34444454444443322 45688888888877665 99999888889999999887643 12233356778888754
No 63
>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=56.83 E-value=55 Score=34.93 Aligned_cols=73 Identities=19% Similarity=0.147 Sum_probs=47.6
Q ss_pred hHHHHHHHHHHHHhhhc-CCCceEEEEEeCCCCCh--hHHHHHHhhhhcCceeeeecccccccCChhhHHHHHHHHHH
Q 008882 169 NQIEKALVDVHNRTTQQ-GKQLQLLIIILPDVSGS--YGRIKRVCETELGIVSQCCQPRQASRLNIPYFENVALKINV 243 (550)
Q Consensus 169 ~~ve~~L~~i~~~~~~~-~~~~~lvlvIlp~~~~~--Y~~IK~~~~~~~GI~TQ~I~~~t~~k~~~~~~~Ni~lKINa 243 (550)
..+.+.|++...+.+.+ +..|.|+++...+...+ |...|...+.+.||.+..+.... .....-+.+++.++|.
T Consensus 83 ~~i~~~lk~~v~~lk~~~g~~P~LaiIlvG~dpaS~~Yv~~k~K~~e~~GI~~~~~~lpe--~~te~ell~~I~~LN~ 158 (364)
T PLN02616 83 KKIRDEITIEVSRMKESIGVVPGLAVILVGDRKDSATYVRNKKKACDSVGINSFEVRLPE--DSTEQEVLKFISGFNN 158 (364)
T ss_pred HHHHHHHHHHHHHHHHcCCCCCeEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCC--CCCHHHHHHHHHHHcC
Confidence 34444454444443332 35688988888877665 99999888889999998776432 1223345677778874
No 64
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=54.57 E-value=68 Score=33.12 Aligned_cols=73 Identities=16% Similarity=0.241 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHhhhc-CCCceEEEEEeCCCCCh--hHHHHHHhhhhcCceeeeecccccccCChhhHHHHHHHHHHh
Q 008882 170 QIEKALVDVHNRTTQQ-GKQLQLLIIILPDVSGS--YGRIKRVCETELGIVSQCCQPRQASRLNIPYFENVALKINVK 244 (550)
Q Consensus 170 ~ve~~L~~i~~~~~~~-~~~~~lvlvIlp~~~~~--Y~~IK~~~~~~~GI~TQ~I~~~t~~k~~~~~~~Ni~lKINaK 244 (550)
.+.+.|++.....+.+ +..|.|+++...+...+ |...|...+.+.||.+-.+.... .....-+.+++.++|..
T Consensus 13 ~i~~~lk~~v~~l~~~~g~~P~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~--~~~~~~l~~~I~~lN~d 88 (284)
T PRK14179 13 KMQAELAEKVAKLKEEKGIVPGLVVILVGDNPASQVYVRNKERSALAAGFKSEVVRLPE--TISQEELLDLIERYNQD 88 (284)
T ss_pred HHHHHHHHHHHHHHhccCCCceEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCC--CCCHHHHHHHHHHHhCC
Confidence 3444444444443322 35688888888777665 99988777889999998876642 12334466788888754
No 65
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=54.32 E-value=67 Score=33.06 Aligned_cols=74 Identities=15% Similarity=0.185 Sum_probs=47.5
Q ss_pred hHHHHHHHHHHHHhhhcC-CCceEEEEEeCCCCCh--hHHHHHHhhhhcCceeeeecccccccCChhhHHHHHHHHHHh
Q 008882 169 NQIEKALVDVHNRTTQQG-KQLQLLIIILPDVSGS--YGRIKRVCETELGIVSQCCQPRQASRLNIPYFENVALKINVK 244 (550)
Q Consensus 169 ~~ve~~L~~i~~~~~~~~-~~~~lvlvIlp~~~~~--Y~~IK~~~~~~~GI~TQ~I~~~t~~k~~~~~~~Ni~lKINaK 244 (550)
+.+.+.|++.....+.++ ..|.|+++...+...+ |...|...+.+.||.+..+.... .....-+.+.+.++|.-
T Consensus 12 ~~i~~~lk~~i~~l~~~g~~~P~Laii~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~--~~~~~el~~~I~~lN~d 88 (278)
T PRK14172 12 LKIKEEIKNFVEERKENGLSIPKIASILVGNDGGSIYYMNNQEKVANSLGIDFKKIKLDE--SISEEDLINEIEELNKD 88 (278)
T ss_pred HHHHHHHHHHHHHHHhcCCCCceEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCC--CCCHHHHHHHHHHHhCC
Confidence 344445554444433222 3488888888777665 99888778889999998887642 12233356777888754
No 66
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=52.44 E-value=1.2e+02 Score=35.54 Aligned_cols=21 Identities=14% Similarity=0.449 Sum_probs=13.1
Q ss_pred EEEEecCCCCCHHHHHHHHHHh
Q 008882 458 YHVLYDENRFSADDLQVLTNNL 479 (550)
Q Consensus 458 Y~Vl~d~~~~~~d~lq~lt~~L 479 (550)
|+. +|+..+++||+-.-+++.
T Consensus 965 Yya-Fd~kkysmEEFFaDi~tF 985 (1102)
T KOG1924|consen 965 YYA-FDPKKYSMEEFFADIRTF 985 (1102)
T ss_pred Hee-cCcccCcHHHHHHHHHHH
Confidence 443 777778888765554443
No 67
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=51.99 E-value=80 Score=32.61 Aligned_cols=78 Identities=17% Similarity=0.224 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHhhhc-CCCceEEEEEeCCCCCh--hHHHHHHhhhhcCceeeeecccccccCChhhHHHHHHHHHH--h
Q 008882 170 QIEKALVDVHNRTTQQ-GKQLQLLIIILPDVSGS--YGRIKRVCETELGIVSQCCQPRQASRLNIPYFENVALKINV--K 244 (550)
Q Consensus 170 ~ve~~L~~i~~~~~~~-~~~~~lvlvIlp~~~~~--Y~~IK~~~~~~~GI~TQ~I~~~t~~k~~~~~~~Ni~lKINa--K 244 (550)
.+.+.|++.....+.+ +..|.|+++...+...+ |...|...+.+.||.+..+.... .....-+.+++.++|. .
T Consensus 14 ~i~~~lk~~i~~l~~~~~~~P~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~--~~s~~el~~~I~~lN~D~~ 91 (284)
T PRK14177 14 KIRNEIRETIEERKTKNKRIPKLATILVGNNPASETYVSMKVKACHKVGMGSEMIRLKE--QTTTEELLGVIDKLNLDPN 91 (284)
T ss_pred HHHHHHHHHHHHHHhcCCCCCeEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCC--CCCHHHHHHHHHHHhCCCC
Confidence 3444444444443322 24588888877776655 99988778889999999887642 1234456688888886 3
Q ss_pred cCCcc
Q 008882 245 VGGRN 249 (550)
Q Consensus 245 lGG~n 249 (550)
.-|+-
T Consensus 92 V~GIl 96 (284)
T PRK14177 92 VDGIL 96 (284)
T ss_pred CCeEE
Confidence 34543
No 68
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=51.02 E-value=82 Score=32.55 Aligned_cols=73 Identities=22% Similarity=0.244 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHhhhc-CCCceEEEEEeCCCCCh--hHHHHHHhhhhcCceeeeecccccccCChhhHHHHHHHHHHh
Q 008882 170 QIEKALVDVHNRTTQQ-GKQLQLLIIILPDVSGS--YGRIKRVCETELGIVSQCCQPRQASRLNIPYFENVALKINVK 244 (550)
Q Consensus 170 ~ve~~L~~i~~~~~~~-~~~~~lvlvIlp~~~~~--Y~~IK~~~~~~~GI~TQ~I~~~t~~k~~~~~~~Ni~lKINaK 244 (550)
.+.+.|.+.....+.+ +..|.|+++..-+...+ |...|...+.+.||.+-.+.... .....-+.+++.++|.-
T Consensus 12 ~i~~~l~~~v~~l~~~~g~~P~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~--~~~~~el~~~I~~lN~D 87 (285)
T PRK14191 12 KIEKDLKNKIQILTAQTGKRPKLAVILVGKDPASQTYVNMKIKACERVGMDSDLHTLQE--NTTEAELLSLIKDLNTD 87 (285)
T ss_pred HHHHHHHHHHHHHHhcCCCCCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCC--CCCHHHHHHHHHHHhCC
Confidence 3444444444433322 35788888877776555 99999888899999998877642 12233466788888854
No 69
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=50.04 E-value=81 Score=32.48 Aligned_cols=58 Identities=21% Similarity=0.156 Sum_probs=42.2
Q ss_pred CCCceEEEEEeCCCCCh--hHHHHHHhhhhcCceeeeecccccccCChhhHHHHHHHHHHhc
Q 008882 186 GKQLQLLIIILPDVSGS--YGRIKRVCETELGIVSQCCQPRQASRLNIPYFENVALKINVKV 245 (550)
Q Consensus 186 ~~~~~lvlvIlp~~~~~--Y~~IK~~~~~~~GI~TQ~I~~~t~~k~~~~~~~Ni~lKINaKl 245 (550)
+..|.|+++...+...+ |...|...+.+.||.+..+.... .....-+...+.++|.--
T Consensus 24 g~~P~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~--~~~~~el~~~I~~lN~D~ 83 (279)
T PRK14178 24 GLYPRLATVIVGDDPASQMYVRMKHRACERVGIGSVGIELPG--DATTRTVLERIRRLNEDP 83 (279)
T ss_pred CCCCeEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCC--CCCHHHHHHHHHHHhCCC
Confidence 35788888888777665 99999888889999999887643 123334567788887543
No 70
>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=48.13 E-value=78 Score=32.72 Aligned_cols=56 Identities=20% Similarity=0.181 Sum_probs=41.5
Q ss_pred CCceEEEEEeCCCCCh--hHHHHHHhhhhcCceeeeecccccccCChhhHHHHHHHHHHh
Q 008882 187 KQLQLLIIILPDVSGS--YGRIKRVCETELGIVSQCCQPRQASRLNIPYFENVALKINVK 244 (550)
Q Consensus 187 ~~~~lvlvIlp~~~~~--Y~~IK~~~~~~~GI~TQ~I~~~t~~k~~~~~~~Ni~lKINaK 244 (550)
..|.|+++...+...+ |...|...+.+.||.+..+.... .....-+.+++.++|.-
T Consensus 28 ~~P~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~--~~~~~el~~~I~~lN~D 85 (287)
T PRK14173 28 FVPHLRVVRLGEDPASVSYVRLKDRQAKALGLRSQVEVLPE--STSQEELLELIARLNAD 85 (287)
T ss_pred CCCcEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCC--CCCHHHHHHHHHHHhCC
Confidence 4688888888777655 99999888899999999887642 12233466788888864
No 71
>PRK14668 uvrC excinuclease ABC subunit C; Provisional
Probab=47.47 E-value=1.3e+02 Score=34.25 Aligned_cols=107 Identities=22% Similarity=0.236 Sum_probs=60.4
Q ss_pred CCeEEEEEeecCCCCCCCCCCcEEEEEEeecCCCCcc-eeeEEEeccCchhhhhhhhcccCCCCCCCchhHHHHHHHHHH
Q 008882 266 RPTIIFGSDVTHPQPGEDSSPSIAAVVASMDWPEVTK-YRGLVSAQAHNQEIIQDLYKSTQDPFGGSVHGGMIRELLIAF 344 (550)
Q Consensus 266 ~~tmIIGiDVsh~~~~~~~~pSi~avVaS~d~~~~~~-y~s~~~~Q~~~~e~i~~l~~~~~~~~~~~~~~~~~~~~L~~f 344 (550)
.+.-|-++|+||-.. .-.++++|.-.| ....+ .+-.+.+.. -.+|+ ..|.+++.+.+..+
T Consensus 374 ~p~rIE~fDiSh~~G----~~~V~s~Vvf~~-G~~~k~~YR~f~i~~----~~dD~----------~~m~Evl~RR~~r~ 434 (577)
T PRK14668 374 RPERIEGFDVSHAQG----RAVVGSNVCFVD-GSAETADYRRKKLTE----RNDDY----------ANMRELVRWRAERA 434 (577)
T ss_pred CCCEEEEEECCccCC----CCceEEEEEEEC-CccCHHHcCeecCCC----CCChH----------HHHHHHHHHHHHhh
Confidence 467899999999753 356777777666 33221 112222321 13453 12345555554444
Q ss_pred HHhc--CCCCceEEEEecCCCchhHHHHHHHHHHHHHHHHHhhcCCCCCCEEEEEEeecccCccC
Q 008882 345 RRST--NLKPHRIIFYRDGVGEGQFSQVLLHEMSAIRQACASLEEGYAPPVTFVVVQKRHHTRLF 407 (550)
Q Consensus 345 ~~~~--~~~P~~IIiyRdGvsegq~~~v~~~Ev~~i~~a~~~~~~~y~P~it~Ivv~Krh~~Rff 407 (550)
.+.. +.+|+-||| || +.||+ .+..+++.+++. .|.+|...|+. .++|
T Consensus 435 ~~~~~~~~~PDLili--DG-G~gQl--------~aa~~~l~elg~----~i~v~glaK~~-e~i~ 483 (577)
T PRK14668 435 VEGRDDRPDPDLLLI--DG-GDGQL--------GAARDALAETGW----DVPAIALAKAE-ELVV 483 (577)
T ss_pred hccccCCCCCCEEEE--eC-CHHHH--------HHHHHHHHHcCC----CCcEEEEEcCC-eEEE
Confidence 3221 258988877 76 44554 455777777732 46788888854 3344
No 72
>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=46.58 E-value=90 Score=32.28 Aligned_cols=56 Identities=18% Similarity=0.256 Sum_probs=41.4
Q ss_pred CCCceEEEEEeCCCCCh--hHHHHHHhhhhcCceeeeecccccccCChhhHHHHHHHHHH
Q 008882 186 GKQLQLLIIILPDVSGS--YGRIKRVCETELGIVSQCCQPRQASRLNIPYFENVALKINV 243 (550)
Q Consensus 186 ~~~~~lvlvIlp~~~~~--Y~~IK~~~~~~~GI~TQ~I~~~t~~k~~~~~~~Ni~lKINa 243 (550)
+..|.|+++...+...+ |...|...+.+.||.+..+.... .....-+.+++.++|.
T Consensus 24 ~~~P~LaiI~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~--~~t~~el~~~I~~lN~ 81 (287)
T PRK14181 24 STAPGLAVVLIGNDPASEVYVGMKVKKATDLGMVSKAHRLPS--DATLSDILKLIHRLNN 81 (287)
T ss_pred CCCCcEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCC--CCCHHHHHHHHHHHhC
Confidence 35788888888777665 99999888899999998887643 1223345678888874
No 73
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=42.87 E-value=91 Score=36.38 Aligned_cols=19 Identities=16% Similarity=0.317 Sum_probs=12.1
Q ss_pred CCCCCcccccC-CCCCCCcc
Q 008882 111 PPSSSQAMRLP-VRPGFGTV 129 (550)
Q Consensus 111 ~~~s~~~~~~P-~rP~~G~~ 129 (550)
.|...+....| +|+.|+.+
T Consensus 615 kpKK~~k~e~~Mrr~nW~kI 634 (1102)
T KOG1924|consen 615 KPKKVYKPEVPMRRFNWSKI 634 (1102)
T ss_pred CccccCCCCCccccCCcccc
Confidence 34444455555 78899986
No 74
>PF04493 Endonuclease_5: Endonuclease V; InterPro: IPR007581 Endonuclease V is specific for single-stranded DNA, for duplex DNA that contains uracil, or that is damaged []. Matrix metalloproteinase-1 (MMP-1) is the major enzyme responsible for collagen 1 digestion. It is induced by exposure to sunlight, but is reduced with treatment of DNA repair enzyme endonuclease V []. This family consequently has potential medical importance []. This endonuclease also appears in bifunctional enzymes, such as the bifunctional methyltransferase/endonuclease in Thermoplasma acidophilum.; GO: 0004519 endonuclease activity, 0006281 DNA repair; PDB: 3GA2_A 2W36_A 3HD0_A 2W35_B 3GOC_B.
Probab=42.70 E-value=1.2e+02 Score=29.80 Aligned_cols=32 Identities=22% Similarity=0.312 Sum_probs=23.7
Q ss_pred CCCHHHHHHHHHHhhhhcCccCCCccccchhhHHHHHH
Q 008882 466 RFSADDLQVLTNNLCYTYARCTRSVSIVPPAYYAHLAA 503 (550)
Q Consensus 466 ~~~~d~lq~lt~~Lc~~y~~~~~~vslPaPl~yA~~~a 503 (550)
.++.+..-+++..+|-. -.++|.|++.||+++
T Consensus 175 ~i~l~ta~~iv~~~~~~------~~r~PeP~r~Ad~~t 206 (206)
T PF04493_consen 175 RISLETALEIVLKLCKG------GYRLPEPTRLADLLT 206 (206)
T ss_dssp SS-HHHHHHHHHHTSST------TSSS-HHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHcCC------CCcCCCcchhhhhcC
Confidence 46889888999888643 267999999999874
No 75
>KOG3123 consensus Diphthine synthase [Translation, ribosomal structure and biogenesis]
Probab=42.41 E-value=26 Score=34.39 Aligned_cols=55 Identities=18% Similarity=0.209 Sum_probs=35.9
Q ss_pred hhHHHHHHHHHHHHhhhcCCCceEEEEEeCCCCCh-hHHHHHHhhhhcCceeeeeccc
Q 008882 168 PNQIEKALVDVHNRTTQQGKQLQLLIIILPDVSGS-YGRIKRVCETELGIVSQCCQPR 224 (550)
Q Consensus 168 ~~~ve~~L~~i~~~~~~~~~~~~lvlvIlp~~~~~-Y~~IK~~~~~~~GI~TQ~I~~~ 224 (550)
+.++++++--+--.....+.-+.++++--.++..+ |+.||+ ..+.|+.|-|+..=
T Consensus 111 NASimNavG~CGLqlY~fGetVSiv~ftd~wrP~SfydkI~~--Nr~~glHTLcLLDI 166 (272)
T KOG3123|consen 111 NASIMNAVGCCGLQLYNFGETVSIVFFTDNWRPESFYDKIKE--NRQLGLHTLCLLDI 166 (272)
T ss_pred chHHHhhhccceeeeeccCcEEEEEEEccCcCchhHHHHHHH--hhhcCceeEEEEEE
Confidence 35555555432221111234567777777777766 999995 78999999999754
No 76
>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]
Probab=38.76 E-value=1.4e+02 Score=30.78 Aligned_cols=73 Identities=21% Similarity=0.266 Sum_probs=50.0
Q ss_pred hHHHHHHHHHHHHhhh-cCCCceEEEEEeCCCCCh--hHHHHHHhhhhcCceeeeecccccccCChhhHHHHHHHHHH
Q 008882 169 NQIEKALVDVHNRTTQ-QGKQLQLLIIILPDVSGS--YGRIKRVCETELGIVSQCCQPRQASRLNIPYFENVALKINV 243 (550)
Q Consensus 169 ~~ve~~L~~i~~~~~~-~~~~~~lvlvIlp~~~~~--Y~~IK~~~~~~~GI~TQ~I~~~t~~k~~~~~~~Ni~lKINa 243 (550)
+.+.+.|.+..+..+. .+..|.|++++.-+.... |-+.|...+.+.||.+..+.... .....-+.+++.++|.
T Consensus 10 ~~i~~~lk~~v~~~~~~~~~~P~LavilvgddpaS~~YV~~K~k~~~~iGi~~~~~~l~~--~~t~~eLl~~I~~lN~ 85 (283)
T COG0190 10 EKIREELKEKVEALKAKGGFKPGLAVILVGDDPASQVYVRSKKKAAEEIGIASELYDLPE--DITEEELLALIDELNA 85 (283)
T ss_pred HHHHHHHHHHHHHHHhccCCCceEEEEEeCCCHHHHHHHHHHHHHHHHcCCeeEEEeCCC--cCCHHHHHHHHHHhcC
Confidence 3444445444444332 235788888888877655 99999888899999999988752 2344557788888864
No 77
>PRK00766 hypothetical protein; Provisional
Probab=38.74 E-value=36 Score=33.11 Aligned_cols=36 Identities=17% Similarity=0.081 Sum_probs=29.7
Q ss_pred CCCCHHHHHHHHHHhhhhcCccCCCccccchhhHHHHHHHHHh
Q 008882 465 NRFSADDLQVLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRAR 507 (550)
Q Consensus 465 ~~~~~d~lq~lt~~Lc~~y~~~~~~vslPaPl~yA~~~a~R~r 507 (550)
.+++.|+-.+++-.+|.- -++|.|+..||++|....
T Consensus 152 ~gi~l~~A~~lv~~~~~~-------~riPEPlR~Ahlia~~~~ 187 (194)
T PRK00766 152 AGIDPETAAEIVRLTSTR-------SLIPEPLRLAHLIASGVM 187 (194)
T ss_pred cCCCHHHHHHHHHHhccC-------CCCchhhHHHHHHHHHhh
Confidence 568899999999888753 379999999999996553
No 78
>PF15320 RAM: mRNA cap methylation, RNMT-activating mini protein
Probab=37.15 E-value=73 Score=26.57 Aligned_cols=8 Identities=75% Similarity=1.203 Sum_probs=4.5
Q ss_pred CCCCCCCC
Q 008882 2 SRRGGGGR 9 (550)
Q Consensus 2 ~~~~~~~~ 9 (550)
+|++|.+|
T Consensus 37 ~r~~gn~r 44 (81)
T PF15320_consen 37 SRRGGNQR 44 (81)
T ss_pred cCCCCCCC
Confidence 55555554
No 79
>PF02772 S-AdoMet_synt_M: S-adenosylmethionine synthetase, central domain; InterPro: IPR022629 The three domains of S-adenosylmethionine synthetase have the same alpha+beta fold. This entry represents the central domain and is found in association with PF00438 from PFAM and PF02773 from PFAM. S-adenosylmethionine synthetase (MAT, 2.5.1.6 from EC) is the enzyme that catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP []. AdoMet is an important methyl donor for transmethylation and is also the propylamino donor in polyamine biosynthesis. In bacteria there is a single isoform of AdoMet synthetase (gene metK), there are two in budding yeast (genes SAM1 and SAM2) and in mammals while in plants there is generally a multigene family. The sequence of AdoMet synthetase is highly conserved throughout isozymes and species. The active sites of both the Escherichia coli and rat liver MAT reside between two subunits, with contributions from side chains of residues from both subunits, resulting in a dimer as the minimal catalytic entity. The side chains that contribute to the ligand binding sites are conserved between the two proteins. In the structures of complexes with the E. coli enzyme, the phosphate groups have the same positions in the (PPi plus Pi) complex and the (ADP plus Pi) complex, and are located at the bottom of a deep cavity with the adenosyl group nearer the entrance []; GO: 0004478 methionine adenosyltransferase activity; PDB: 3S82_B 2OBV_A 3RV2_A 1FUG_A 1RG9_D 1XRA_A 1P7L_C 1XRB_A 1MXA_A 1MXB_A ....
Probab=37.01 E-value=21 Score=31.96 Aligned_cols=31 Identities=23% Similarity=0.121 Sum_probs=22.3
Q ss_pred hhcCccCCCccccchhhHHHHHHHHHhhhhc
Q 008882 481 YTYARCTRSVSIVPPAYYAHLAAFRARYYIE 511 (550)
Q Consensus 481 ~~y~~~~~~vslPaPl~yA~~~a~R~r~~~~ 511 (550)
|.|+-.-.+--+|.|+++||+|++|......
T Consensus 12 fGYA~~ET~~~MPl~i~lAh~L~~~l~~~R~ 42 (120)
T PF02772_consen 12 FGYACDETPELMPLPIVLAHRLARRLAEVRK 42 (120)
T ss_dssp EEEEETTSTTSS-HHHHHHHHHHHHHHHHHH
T ss_pred EeeEcCCCCccCChHHHHHHHHHHHHHHHHh
Confidence 3444444567799999999999999877554
No 80
>cd01457 vWA_ORF176_type VWA ORF176 type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses. In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most
Probab=35.71 E-value=2.2e+02 Score=27.14 Aligned_cols=67 Identities=16% Similarity=0.323 Sum_probs=40.6
Q ss_pred CCCchhHHHHHHHHHHHHh---cCCCC--ceEEEEecCCCchhHHHHHHHHHHHHHHHHHhhcCCCCCCEEEEEEee
Q 008882 329 GGSVHGGMIRELLIAFRRS---TNLKP--HRIIFYRDGVGEGQFSQVLLHEMSAIRQACASLEEGYAPPVTFVVVQK 400 (550)
Q Consensus 329 ~~~~~~~~~~~~L~~f~~~---~~~~P--~~IIiyRdGvsegq~~~v~~~Ev~~i~~a~~~~~~~y~P~it~Ivv~K 400 (550)
..+.+...+..+++.|... +...| ..|||.-||...+.- .+ .+.|.++..++....+..|.+|.|-.
T Consensus 80 G~T~l~~~l~~a~~~~~~~~~~~~~~p~~~~vIiiTDG~~~d~~-~~----~~~i~~a~~~l~~~~~i~i~~v~vG~ 151 (199)
T cd01457 80 GGTNLAAVLQDALNNYFQRKENGATCPEGETFLVITDGAPDDKD-AV----ERVIIKASDELDADNELAISFLQIGR 151 (199)
T ss_pred CcCcHHHHHHHHHHHHHHHHhhccCCCCceEEEEEcCCCCCcHH-HH----HHHHHHHHHhhccccCceEEEEEeCC
Confidence 3345577777777777653 22344 899999999875321 11 24556666665444345677776633
No 81
>PF09373 PMBR: Pseudomurein-binding repeat; InterPro: IPR018975 Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) is a methanogenic Gram-positive microorganism with a cell wall consisting of pseudomurein. This repeat specifically binds to pseudomurein. This repeat is found at the N terminus of PeiW and PeiP which are pseudomurein binding phage proteins.
Probab=34.12 E-value=43 Score=22.74 Aligned_cols=23 Identities=17% Similarity=0.141 Sum_probs=17.5
Q ss_pred hHHHHHHHHHHHHhcCCCCceEEE
Q 008882 334 GGMIRELLIAFRRSTNLKPHRIIF 357 (550)
Q Consensus 334 ~~~~~~~L~~f~~~~~~~P~~IIi 357 (550)
.+++ ..+..|.+.|+++|..|-|
T Consensus 11 ~d~a-~rv~~f~~~ngRlPnyV~i 33 (33)
T PF09373_consen 11 LDMA-SRVNNFYESNGRLPNYVSI 33 (33)
T ss_pred HHHH-HHHHHHHHHcCCCCCeeeC
Confidence 3444 4678899999999998753
No 82
>COG0322 UvrC Nuclease subunit of the excinuclease complex [DNA replication, recombination, and repair]
Probab=32.77 E-value=3e+02 Score=31.47 Aligned_cols=107 Identities=21% Similarity=0.249 Sum_probs=55.5
Q ss_pred CCeEEEEEeecCCCCCCCCCCcEEEEEEeecCCCCcc-eeeEEEeccCchhhhhhhhcccCCCCCCCchhHHHHHHHHHH
Q 008882 266 RPTIIFGSDVTHPQPGEDSSPSIAAVVASMDWPEVTK-YRGLVSAQAHNQEIIQDLYKSTQDPFGGSVHGGMIRELLIAF 344 (550)
Q Consensus 266 ~~tmIIGiDVsh~~~~~~~~pSi~avVaS~d~~~~~~-y~s~~~~Q~~~~e~i~~l~~~~~~~~~~~~~~~~~~~~L~~f 344 (550)
.+.-|-++|+||-.. .-.++++|...| ....+ .+-.+... -+-.+|. ..|.+++. +.|
T Consensus 378 ~p~rIE~~D~Sh~~g----~~~V~smvvf~~-g~~~k~~YRry~i~---~~~~dDy----------a~m~evl~---RR~ 436 (581)
T COG0322 378 APYRIECFDISHIQG----EDTVGSMVVFED-GGPSKKDYRRYNIK---ITGGDDY----------ASMREVLT---RRY 436 (581)
T ss_pred CceeEEEeecCcccc----ccceeEEEEEcC-CCCChhhccccccc---CCCCchH----------HHHHHHHH---HHh
Confidence 467899999999753 334555555555 22221 11111110 0112332 12234443 334
Q ss_pred HHhcC-CCCceEEEEecCCCchhHHHHHHHHHHHHHHHHHhhcCCCCCCEEEEEEeecccCccCc
Q 008882 345 RRSTN-LKPHRIIFYRDGVGEGQFSQVLLHEMSAIRQACASLEEGYAPPVTFVVVQKRHHTRLFP 408 (550)
Q Consensus 345 ~~~~~-~~P~~IIiyRdGvsegq~~~v~~~Ev~~i~~a~~~~~~~y~P~it~Ivv~Krh~~Rff~ 408 (550)
.+.-. .+|+-|+| || +.||+ .+.++++.+++-+ +-+|.+.|+-.+-|++
T Consensus 437 ~~~~~~~~Pdli~i--DG-GkgQl--------~~a~~vl~~l~~~----~~viglaK~~~~~~~~ 486 (581)
T COG0322 437 SRLLKEELPDLILI--DG-GKGQL--------NAAKEVLKELGLD----IPVIGLAKGEEELLLP 486 (581)
T ss_pred hhccccCCCCEEEE--eC-CHHHH--------HHHHHHHHHcCCC----ccEEEEEecCceeEec
Confidence 43322 79976666 66 45665 4457777777332 2288899987744444
No 83
>PF01949 DUF99: Protein of unknown function DUF99; InterPro: IPR002802 The function of the archaebacterial proteins in this family is unknown.; PDB: 2QH9_A.
Probab=28.95 E-value=34 Score=33.05 Aligned_cols=42 Identities=19% Similarity=0.094 Sum_probs=28.5
Q ss_pred EEEEecCCCCCHHHHHHHHHHhhhhcCccCCCccccchhhHHHHHHHHH
Q 008882 458 YHVLYDENRFSADDLQVLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRA 506 (550)
Q Consensus 458 Y~Vl~d~~~~~~d~lq~lt~~Lc~~y~~~~~~vslPaPl~yA~~~a~R~ 506 (550)
|.|.....+++.++..+++..++.- -++|.||.+||++|+-.
T Consensus 140 ~~vyv~~~Gi~~~~A~~li~~~t~~-------g~iPEPLRvAhliA~~~ 181 (187)
T PF01949_consen 140 GPVYVQSWGIDLEEARELIRRTTLH-------GKIPEPLRVAHLIASAI 181 (187)
T ss_dssp TTEEEEEESS-HHHHHHHHHHC-SS-------SSS-HHHHHHHHHHHHH
T ss_pred ccEEEEEecCCHHHHHHHHHHHhcc-------CCCcccHHHHHHHHHHh
Confidence 3344444578899998888766543 47999999999999543
No 84
>COG4371 Predicted membrane protein [Function unknown]
Probab=28.09 E-value=1.1e+02 Score=30.76 Aligned_cols=8 Identities=13% Similarity=0.177 Sum_probs=3.3
Q ss_pred CCCCCCCC
Q 008882 17 QPTQAPAP 24 (550)
Q Consensus 17 ~~~~~~~~ 24 (550)
++.||++.
T Consensus 72 gpsGGgY~ 79 (334)
T COG4371 72 GPSGGGYS 79 (334)
T ss_pred CCCCCCCC
Confidence 33444444
No 85
>PHA02969 hypothetical protein; Provisional
Probab=26.37 E-value=58 Score=27.82 Aligned_cols=53 Identities=23% Similarity=0.271 Sum_probs=33.7
Q ss_pred EEEEeCCCCCh-hHHHHHHhhhhcCceeeeecc--cccc---cCChhhHHHHHHHHHHhc
Q 008882 192 LIIILPDVSGS-YGRIKRVCETELGIVSQCCQP--RQAS---RLNIPYFENVALKINVKV 245 (550)
Q Consensus 192 vlvIlp~~~~~-Y~~IK~~~~~~~GI~TQ~I~~--~t~~---k~~~~~~~Ni~lKINaKl 245 (550)
|++++.+-+++ |..||- .+..+=|.+-.+.. +++. +.++|.+..++-.||-++
T Consensus 6 v~F~l~nYSddDY~~iKs-id~h~iIisK~~~~s~~~isGYIelK~~~~~Si~~nIN~~~ 64 (111)
T PHA02969 6 IHFILNDYSDDDYKKIKS-IDCHHIIIDKESDDSHKIISGYIELKDGALCSIIENINPNI 64 (111)
T ss_pred EEEEeccCCchhHHhhhh-cceeEEEEEeecCCcccceeEEEEeccccchHHHHhhChHH
Confidence 56777777666 999995 56666666666655 2222 234566666666677664
No 86
>PF05642 Sporozoite_P67: Sporozoite P67 surface antigen; InterPro: IPR008845 This family consists of several Theileria P67 surface antigens. A stage specific surface antigen of Theileria parva, p67, is the basis for the development of an anti-sporozoite vaccine for the control of East Coast fever (ECF) in Bos taurus. The antigen has been shown to contain five distinct linear peptide sequences recognised by sporozoite-neutralising murine monoclonal antibodies [].
Probab=26.18 E-value=6.6e+02 Score=28.56 Aligned_cols=9 Identities=33% Similarity=0.593 Sum_probs=4.3
Q ss_pred eEEEEEeec
Q 008882 268 TIIFGSDVT 276 (550)
Q Consensus 268 tmIIGiDVs 276 (550)
.+.+||-+.
T Consensus 493 ~i~~gfkia 501 (727)
T PF05642_consen 493 SIGFGFKIA 501 (727)
T ss_pred hhccceeee
Confidence 344555444
No 87
>PF08795 DUF1796: Putative papain-like cysteine peptidase (DUF1796); InterPro: IPR014903 The proteins in this entry are uncharacterised; but are related to papain-like cysteine peptidases.
Probab=24.80 E-value=3.3e+02 Score=25.57 Aligned_cols=55 Identities=18% Similarity=0.208 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHhcCCCCceEEEEe-----cCCCchhHHHHHHHHHHHHHHHHHhhcCCCCCCEEEEEE
Q 008882 335 GMIRELLIAFRRSTNLKPHRIIFYR-----DGVGEGQFSQVLLHEMSAIRQACASLEEGYAPPVTFVVV 398 (550)
Q Consensus 335 ~~~~~~L~~f~~~~~~~P~~IIiyR-----dGvsegq~~~v~~~Ev~~i~~a~~~~~~~y~P~it~Ivv 398 (550)
+-+.++++.|.+.- ..+++|++.| +|..+ -+|+..+.+++.++..+ ...+.+|++
T Consensus 102 ~k~~rRi~Rf~~~l-~~~~~ilFvr~~~~~~~~~~-------~e~~~eL~~~L~~~~~~-~~~~l~~~~ 161 (167)
T PF08795_consen 102 EKYDRRIDRFLKKL-ESSKRILFVRTRIAETGGED-------YEEAKELLQVLSELVKG-NFFLLLLNH 161 (167)
T ss_pred HHHHHHHHHHHHHH-hCCCcEEEEEEccccCCCCC-------HHHHHHHHHHHHHHcCC-CceEEEEEc
Confidence 33456666666533 3457999999 66533 35777788888887544 444444443
No 88
>PF01023 S_100: S-100/ICaBP type calcium binding domain; InterPro: IPR013787 The calcium-binding domain found in S100 and CaBP-9k proteins is a subfamily of the EF-hand calcium-binding domain []. S100s are small dimeric acidic calcium and zinc-binding proteins abundant in the brain, with S100B playing an important role in modulating the proliferation and differentiation of neurons and glia cells []. S100 proteins have two different types of calcium-binding sites: a low affinity one with a special structure, and a 'normal' EF-hand type high-affinity site. Calbindin-D9k (CaBP-9k) also belong to this family of proteins, but it does not form dimers. CaBP-9k is a cytosolic protein expressed in a variety of tissues. Although its precise function is unknown, it appears to be under the control of the steroid hormones oestrogen and progesterone in the female reproductive system []. In the intestine, CaBP-9k may be involved in calcium absorption by mediating intracellular diffusion []. This entry represents a subdomain of the calcium-binding domain found in S100, CaBP-9k, and related proteins.; PDB: 2RGI_A 4DUQ_B 2KAY_B 2KAX_A 2CNP_A 1CNP_A 1A03_A 1JWD_B 2JTT_A 1XK4_B ....
Probab=24.31 E-value=69 Score=23.31 Aligned_cols=39 Identities=13% Similarity=0.317 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHhcCCCCceEEEEecCCCchhHHHHHHHHHHHH
Q 008882 335 GMIRELLIAFRRSTNLKPHRIIFYRDGVGEGQFSQVLLHEMSAI 378 (550)
Q Consensus 335 ~~~~~~L~~f~~~~~~~P~~IIiyRdGvsegq~~~v~~~Ev~~i 378 (550)
.-|..++..|++..++-.+ .|-++.++++.+++.|++.+
T Consensus 3 ~ai~~iI~vFhkYa~~~Gd-----~~~Lsk~Elk~Ll~~Elp~f 41 (44)
T PF01023_consen 3 KAIETIIDVFHKYAGKEGD-----KDTLSKKELKELLEKELPNF 41 (44)
T ss_dssp HHHHHHHHHHHHHHTSSSS-----TTSEEHHHHHHHHHHHSTTT
T ss_pred HHHHHHHHHHHHHhccCCC-----CCeEcHHHHHHHHHHHHHHH
Confidence 4455667777776653322 24467899999999998765
No 89
>smart00157 PRP Major prion protein. The prion protein is a major component of scrapie-associated fibrils in Creutzfeldt-Jakob disease, kuru, Gerstmann-Straussler syndrome and bovine spongiform encephalopathy.
Probab=23.86 E-value=2.1e+02 Score=27.71 Aligned_cols=13 Identities=15% Similarity=0.079 Sum_probs=6.5
Q ss_pred hHHHHHHHHHHHH
Q 008882 169 NQIEKALVDVHNR 181 (550)
Q Consensus 169 ~~ve~~L~~i~~~ 181 (550)
.+.+.++.++++.
T Consensus 147 ~s~~~Fv~dC~N~ 159 (217)
T smart00157 147 SNQNNFVHDCVNI 159 (217)
T ss_pred cchhhHHHHHHhh
Confidence 3344455555554
No 90
>COG0192 MetK S-adenosylmethionine synthetase [Coenzyme metabolism]
Probab=23.72 E-value=46 Score=35.16 Aligned_cols=33 Identities=18% Similarity=0.103 Sum_probs=26.5
Q ss_pred hhhhcCccCCCccccchhhHHHHHHHHHhhhhc
Q 008882 479 LCYTYARCTRSVSIVPPAYYAHLAAFRARYYIE 511 (550)
Q Consensus 479 Lc~~y~~~~~~vslPaPl~yA~~~a~R~r~~~~ 511 (550)
+-|.|...-.+.-+|+|++|||++++|..++..
T Consensus 125 imFGyA~~ET~~lMPlpI~lAH~l~~r~a~~Rk 157 (388)
T COG0192 125 IMFGYACNETPELMPLPISLAHRLLRRLAEVRK 157 (388)
T ss_pred eEeeeecCCcccccChHHHHHHHHHHHHHHHHh
Confidence 456666666778899999999999999888543
No 91
>COG4634 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.09 E-value=1.5e+02 Score=26.16 Aligned_cols=35 Identities=23% Similarity=0.364 Sum_probs=28.7
Q ss_pred CCCceEEEEecC-CCchhHHHHHHHHHHHHHHHHHh
Q 008882 350 LKPHRIIFYRDG-VGEGQFSQVLLHEMSAIRQACAS 384 (550)
Q Consensus 350 ~~P~~IIiyRdG-vsegq~~~v~~~Ev~~i~~a~~~ 384 (550)
..|-+|+..|-| ||..+...++..+++++.+-+.+
T Consensus 66 G~Ppki~wLr~gNvs~~~ie~l~~~~l~~~~e~le~ 101 (113)
T COG4634 66 GSPPKIVWLRCGNVSTREIEILIRSVLRAIGEELES 101 (113)
T ss_pred CCCCeEEEEEecCCCHHHHHHHHHHHHHHHHHHHhC
Confidence 356778888998 99999999998888888877764
No 92
>PHA03264 envelope glycoprotein D; Provisional
Probab=22.47 E-value=3.5e+02 Score=29.04 Aligned_cols=15 Identities=20% Similarity=0.231 Sum_probs=7.0
Q ss_pred ccccCCCCCCCccCc
Q 008882 117 AMRLPVRPGFGTVGR 131 (550)
Q Consensus 117 ~~~~P~rP~~G~~g~ 131 (550)
++.+-+|-|-|....
T Consensus 384 ~~~~~r~rg~g~~~~ 398 (416)
T PHA03264 384 YFVYTRRRGAGPLPT 398 (416)
T ss_pred EEEEEeeccCCCCCc
Confidence 444444444454443
No 93
>PF02084 Bindin: Bindin; InterPro: IPR000775 Bindin, the major protein component of the acrosome granule of sea urchin sperm, mediates species-specific adhesion of sperm to the egg surface during fertilisation [, ]. The protein coats the acrosomal process after externalisation by the acrosome reaction; it binds to sulphated, fucose-containing polysaccharides on the vitelline-layer receptor proteoglycans that cover the egg plasma membrane. Bindins from different genera show high levels of sequence similarity in both the mature bindin domain and in the probindin precursor region. The most highly conserved region is a 42-residue segment in the central portion of the mature bindin protein. This domain may be responsible for conserved functions of bindin, while the more highly divergent flanking regions may be responsible for its species-specific properties [].; GO: 0007342 fusion of sperm to egg plasma membrane
Probab=21.83 E-value=8.1e+02 Score=24.47 Aligned_cols=7 Identities=43% Similarity=0.496 Sum_probs=3.0
Q ss_pred HHHHHHH
Q 008882 236 NVALKIN 242 (550)
Q Consensus 236 Ni~lKIN 242 (550)
||+..+|
T Consensus 178 ~vln~ln 184 (238)
T PF02084_consen 178 NVLNNLN 184 (238)
T ss_pred hhhcccc
Confidence 4444444
No 94
>PRK05592 rplO 50S ribosomal protein L15; Reviewed
Probab=21.83 E-value=1.1e+02 Score=28.38 Aligned_cols=15 Identities=20% Similarity=0.133 Sum_probs=7.6
Q ss_pred CCCCCCCCCCCCCCC
Q 008882 8 GRRPDSRRDQPTQAP 22 (550)
Q Consensus 8 ~~~~~~~~~~~~~~~ 22 (550)
|||++||.|.--|+|
T Consensus 20 GRG~gsG~GkT~GrG 34 (146)
T PRK05592 20 GRGIGSGLGKTAGRG 34 (146)
T ss_pred ecCCCCCCCCcCCCC
Confidence 455555555444444
No 95
>PLN03138 Protein TOC75; Provisional
Probab=21.76 E-value=90 Score=36.81 Aligned_cols=12 Identities=17% Similarity=0.205 Sum_probs=5.0
Q ss_pred CCEEEEEEeecc
Q 008882 391 PPVTFVVVQKRH 402 (550)
Q Consensus 391 P~it~Ivv~Krh 402 (550)
+++++=+.-.+.
T Consensus 555 ~~~s~g~~~q~v 566 (796)
T PLN03138 555 SKFTYGLVVEEI 566 (796)
T ss_pred CceEEEEEEEEE
Confidence 344444444433
No 96
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=21.03 E-value=1.3e+02 Score=35.20 Aligned_cols=13 Identities=46% Similarity=0.800 Sum_probs=5.8
Q ss_pred CCCCCCCCCCCCC
Q 008882 25 SFQRGGGGAAGPP 37 (550)
Q Consensus 25 ~~~~~~~~~~~~~ 37 (550)
...+|.|||+.+|
T Consensus 700 ~~~g~pg~~~~PP 712 (894)
T KOG0132|consen 700 SHRGGPGGHGIPP 712 (894)
T ss_pred CCCCCCCCCCCCC
Confidence 3334444444444
No 97
>smart00157 PRP Major prion protein. The prion protein is a major component of scrapie-associated fibrils in Creutzfeldt-Jakob disease, kuru, Gerstmann-Straussler syndrome and bovine spongiform encephalopathy.
Probab=20.95 E-value=2.8e+02 Score=26.86 Aligned_cols=6 Identities=17% Similarity=0.147 Sum_probs=2.5
Q ss_pred eeeeec
Q 008882 217 VSQCCQ 222 (550)
Q Consensus 217 ~TQ~I~ 222 (550)
++|+..
T Consensus 161 v~~~~~ 166 (217)
T smart00157 161 IKQHTV 166 (217)
T ss_pred eeeeEe
Confidence 344443
No 98
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=20.58 E-value=90 Score=30.15 Aligned_cols=28 Identities=29% Similarity=0.503 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 008882 12 DSRRDQPTQAPAPSFQRGGGGAAGPPGR 39 (550)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 (550)
+++-+.-++|.+.++++|||++++++|+
T Consensus 82 ggr~s~~~~G~y~gggrgGgg~gg~rgp 109 (241)
T KOG0105|consen 82 GGRSSSDRRGSYSGGGRGGGGGGGRRGP 109 (241)
T ss_pred CCCcccccccccCCCCCCCCCCCcccCC
No 99
>cd06536 CIDE_N_ICAD CIDE_N domain of ICAD. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD (DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40 and ICAD/DFF45 during apoptosis. In normal cells, DFF exists in the nucleus as a heterodimer composed of CAD/DFF40 as a latent nuclease and its chaperone and inhibitor subunit ICAD/DFF45. Apoptotic activation of caspase-3 results in the cleavage of DFF45/ICAD and release of active DFF40/CAD nuclease.
Probab=20.48 E-value=1.1e+02 Score=25.47 Aligned_cols=35 Identities=11% Similarity=0.218 Sum_probs=22.7
Q ss_pred hhHHHHHHHHHHHHhcCCCCceEEEEecC--CCchhH
Q 008882 333 HGGMIRELLIAFRRSTNLKPHRIIFYRDG--VGEGQF 367 (550)
Q Consensus 333 ~~~~~~~~L~~f~~~~~~~P~~IIiyRdG--vsegq~ 367 (550)
+++++....+.|.-.....|-+|+.+.|| |.+++|
T Consensus 23 L~eL~~K~~~~l~l~~~~~~~~lvL~eDGT~VddEey 59 (80)
T cd06536 23 LEELRIKACESLGFDSSSAPITLVLAEDGTIVEDEDY 59 (80)
T ss_pred HHHHHHHHHHHhCCCCCCCceEEEEecCCcEEccHHH
Confidence 36666677777654322357899999999 544444
No 100
>KOG2675 consensus Adenylate cyclase-associated protein (CAP/Srv2p) [Cytoskeleton; Signal transduction mechanisms]
Probab=20.04 E-value=1.2e+02 Score=33.12 Aligned_cols=19 Identities=11% Similarity=0.113 Sum_probs=14.3
Q ss_pred CCCCccchhhHHHHHhhhh
Q 008882 83 SPSSSSVSTLVEETEQKLA 101 (550)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~ 101 (550)
+...++.+++.++|-|++.
T Consensus 258 ~~~k~~~~AlFaqlNqGe~ 276 (480)
T KOG2675|consen 258 DANKGGRGALFAQLNQGEG 276 (480)
T ss_pred ccccccHHHHHHHHhccch
Confidence 3344888999999999843
Done!