Query 008882
Match_columns 550
No_of_seqs 211 out of 1095
Neff 7.0
Searched_HMMs 29240
Date Mon Mar 25 13:55:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008882.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008882hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2yhb_A QDE-2, post-transcripti 100.0 1E-93 3.5E-98 767.3 22.4 386 136-550 30-437 (437)
2 4f3t_A Protein argonaute-2; hy 100.0 7.8E-91 2.7E-95 799.0 34.3 390 137-550 469-861 (861)
3 4f1n_A Kpago; argonaute, RNAI, 100.0 2.2E-87 7.5E-92 772.4 29.5 391 136-550 595-1046(1046)
4 2yha_A Post-transcriptional ge 100.0 1.8E-77 6.1E-82 633.6 23.9 337 136-550 30-388 (388)
5 1yvu_A Hypothetical protein AQ 100.0 8.9E-63 3E-67 553.3 31.3 316 136-512 368-695 (706)
6 3ho1_A Argonaute; argonaute, p 100.0 1.4E-56 4.7E-61 496.0 28.8 305 136-506 357-666 (685)
7 1u04_A Argonaute, hypothetical 100.0 3.2E-55 1.1E-59 492.4 28.7 284 168-512 454-758 (771)
8 2w42_A PIWI, putative uncharac 100.0 2.8E-50 9.6E-55 430.8 19.3 278 188-512 99-407 (427)
9 4g0x_A Protein argonaute 1; MI 99.9 3E-22 1E-26 184.0 9.8 117 136-252 27-147 (147)
10 4g0o_A Protein argonaute 5; MI 99.9 3.1E-22 1.1E-26 182.3 7.7 113 136-252 27-139 (139)
11 4g0m_A Protein argonaute 2; MI 99.8 2.5E-21 8.5E-26 178.5 7.8 117 136-252 28-150 (150)
12 3luc_A Protein argonaute-2; MI 99.8 7.8E-21 2.7E-25 172.8 9.9 110 135-249 28-138 (138)
13 4f3t_A Protein argonaute-2; hy 94.5 0.0024 8.4E-08 73.6 -3.6 50 109-158 16-66 (861)
14 4f1n_A Kpago; argonaute, RNAI, 85.5 0.12 4.1E-06 60.4 -1.0 47 112-158 11-79 (1046)
15 2w36_A Endonuclease V; hypoxan 72.8 34 0.0012 32.7 11.7 46 454-508 177-222 (225)
16 2nrr_A Uvrabc system protein C 70.6 39 0.0013 30.5 10.9 101 267-407 17-119 (159)
17 3c65_A Uvrabc system protein C 67.5 28 0.00097 33.3 9.9 102 267-401 14-118 (226)
18 3goc_A Endonuclease V; alpha-b 63.1 53 0.0018 31.6 10.8 45 453-507 180-224 (237)
19 2c2x_A Methylenetetrahydrofola 58.8 30 0.001 34.2 8.5 73 170-244 14-88 (281)
20 4b4u_A Bifunctional protein fo 58.0 28 0.00096 34.8 8.2 57 186-244 51-109 (303)
21 3p2o_A Bifunctional protein fo 55.7 37 0.0013 33.6 8.6 80 170-251 15-98 (285)
22 2nrt_A Uvrabc system protein C 52.0 80 0.0027 30.0 9.9 96 267-401 22-119 (220)
23 3qbz_A DDK kinase regulatory s 51.5 6.7 0.00023 35.4 2.2 62 339-400 46-116 (160)
24 1a4i_A Methylenetetrahydrofola 50.7 43 0.0015 33.4 8.1 56 187-244 34-91 (301)
25 1b0a_A Protein (fold bifunctio 46.7 49 0.0017 32.8 7.8 73 170-244 14-89 (288)
26 4a26_A Putative C-1-tetrahydro 45.2 58 0.002 32.4 8.1 63 187-251 36-102 (300)
27 4a5o_A Bifunctional protein fo 44.7 69 0.0024 31.7 8.5 79 170-250 16-99 (286)
28 3ngx_A Bifunctional protein fo 40.3 77 0.0026 31.1 8.1 56 186-244 25-82 (276)
29 3l07_A Bifunctional protein fo 39.1 63 0.0022 31.9 7.2 63 187-251 33-99 (285)
30 1edz_A 5,10-methylenetetrahydr 34.2 95 0.0032 31.2 7.8 53 187-244 35-89 (320)
31 3ga2_A Endonuclease V; alpha-b 30.3 87 0.003 30.2 6.4 51 453-512 185-235 (246)
32 3iz6_E 40S ribosomal protein S 26.4 5.7 0.00019 39.1 -2.7 19 236-254 162-180 (274)
33 2qh9_A UPF0215 protein AF_1433 24.9 44 0.0015 30.8 3.1 36 465-507 141-176 (184)
No 1
>2yhb_A QDE-2, post-transcriptional gene silencing protein QDE-2; RNA binding protein, argonaute, miRNA, siRNA; 3.65A {Neurospora crassa}
Probab=100.00 E-value=1e-93 Score=767.31 Aligned_cols=386 Identities=31% Similarity=0.513 Sum_probs=270.5
Q ss_pred hHHHHHHHHhhhccccceeeccCC---cccccCCChhHHHHHHHHHHHHhhhcCCCceEEEEEeCCCCCh-hHHHHHHhh
Q 008882 136 RANHFMVQLAERDIHHYDVFNPRP---VIPISSSNPNQIEKALVDVHNRTTQQGKQLQLLIIILPDVSGS-YGRIKRVCE 211 (550)
Q Consensus 136 ~an~F~~~L~~~~~~~Gm~I~~~p---~v~~~~~~~~~ve~~L~~i~~~~~~~~~~~~lvlvIlp~~~~~-Y~~IK~~~~ 211 (550)
.++.|+..|.+.++.+||.|.++. .+.........+ .++++... .+++|||||+|+++.+ |..||++||
T Consensus 30 ~~~~f~~~l~~~~~~~G~~i~~p~~~~~~~~~~~~~~~~--~~~~~~~~-----~~~~lvl~ilp~~~~~~Y~~iK~~~~ 102 (437)
T 2yhb_A 30 GVPQAMTAFAEFLNRTGIPINPRFSPGMSMSVPGSEKEF--FAKVKELM-----SSHQFVVVLLPRKDVAIYNMVKRAAD 102 (437)
T ss_dssp CHHHHHHHHHHHHHHTTCCBCSCCCCCEEEECCSSHHHH--HHHHHHHH-----HTCSEEEEEESSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCEeCCCCCcceecCCCchHHHH--HHHHhhcc-----CCCcEEEEEECCCChhHHHHHHHHHh
Confidence 478999999999999999997653 112222222222 23433221 3799999999998776 999999999
Q ss_pred hhcCceeeeecccccccCChh--hHHHHHHHHHHhcCCcceeecccccccCCccCCCCeEEEEEeecCCC---CC--CCC
Q 008882 212 TELGIVSQCCQPRQASRLNIP--YFENVALKINVKVGGRNTVLVDAVQKRIPLVTDRPTIIFGSDVTHPQ---PG--EDS 284 (550)
Q Consensus 212 ~~~GI~TQ~I~~~t~~k~~~~--~~~Ni~lKINaKlGG~n~~l~~~~~~~lP~~~~~~tmIIGiDVsh~~---~~--~~~ 284 (550)
++.||+||||..+++.|.+++ +++||++|||+||||+||.|+.. +|++.+.+|||||+||+|++ ++ ...
T Consensus 103 ~~~gI~TQcv~~~~~~k~~~q~s~~~Ni~lKiN~KlGG~n~~l~~~----~~~~~~~~tmiiG~DV~H~~~~~~g~~~~~ 178 (437)
T 2yhb_A 103 ITFGVHTVCCVAEKFLSTKGQLGYFANVGLKVNLKFGGTNHNIKTP----IPLLAKGKTMVVGYDVTHPTNLAAGQSPAS 178 (437)
T ss_dssp TTSCCEEEEEEHHHHHCSTTHHHHHHHHHHHHHHHTTCBCCCCSSC----CHHHHTTCEEEEEEEECCCSCCCTTCCSTT
T ss_pred cccCcccEEEehhHhcCcccHHHHHHHHHHHHHHHhCCcceecccc----ccccCCCCEEEEEEEEeccccccCCCcCCC
Confidence 999999999999999888888 99999999999999999999753 45565679999999999998 65 346
Q ss_pred CCcEEEEEEeecCCCCcceeeEEEecc-CchhhhhhhhcccCCCCCCCchhHHHHHHHHHHHH---hcCCCCceEEEEec
Q 008882 285 SPSIAAVVASMDWPEVTKYRGLVSAQA-HNQEIIQDLYKSTQDPFGGSVHGGMIRELLIAFRR---STNLKPHRIIFYRD 360 (550)
Q Consensus 285 ~pSi~avVaS~d~~~~~~y~s~~~~Q~-~~~e~i~~l~~~~~~~~~~~~~~~~~~~~L~~f~~---~~~~~P~~IIiyRd 360 (550)
.||++|||+|+| .++++|.+.+++|. .++|+|++| ++||+++|+.|++ +++.+|++||||||
T Consensus 179 ~pSiaa~vaS~d-~~~~~y~~~~~~Q~~~~~E~i~~l-------------~~~~~~~L~~~~~~~~~~~~~P~rIiiyRD 244 (437)
T 2yhb_A 179 APSIVGLVSTID-QHLGQWPAMVWNNPHGQESMTEQF-------------TDKFKTRLELWRSNPANNRSLPENILIFRD 244 (437)
T ss_dssp SCEEEEEEECCS-TTCCCCCEEEEEETTTHHHHHHHH-------------HHHHHHHHHHHHTCGGGTTCCCSEEEEEEE
T ss_pred CCEEEEEEEecC-CCcCeeeeEEEEcCCcchhHHHHH-------------HHHHHHHHHHHHhhhhhcCCCCceEEEEeC
Confidence 799999999999 99999999999999 999999998 8999999999999 88999999999999
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHhhcCCC-CCCEEEEEEeecccCccCcCCCCCCCCCCCCCCCCCeeeecccccCCCcc
Q 008882 361 GVGEGQFSQVLLHEMSAIRQACASLEEGY-APPVTFVVVQKRHHTRLFPAEHNNRDLTDRSGNILPGTVVDTQICHPTQF 439 (550)
Q Consensus 361 Gvsegq~~~v~~~Ev~~i~~a~~~~~~~y-~P~it~Ivv~Krh~~Rff~~~~~~~~~~~~~~N~~pGTvVd~~it~p~~~ 439 (550)
|||||||.+|+++|+++|++||.++...| +|+||||+|+||||+|||+.+..+. .++.+|++||||||++||+|..+
T Consensus 245 GVseGqf~~V~~~El~~i~~a~~~~~~~~~~p~it~Ivv~Krh~tRff~~~~~~~--~~~~~N~~pGTvVD~~it~p~~~ 322 (437)
T 2yhb_A 245 GVSEGQFQMVIKDELPLVRAACKLVYPAGKLPRITLIVSVKRHQTRFFPTDPKHI--HFKSKSPKEGTVVDRGVTNVRYW 322 (437)
T ss_dssp SCCTTTHHHHHHHTHHHHHHHHHHHSCTTCCCEEEEEEEC----------------------------------------
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHhhcccCCCCEEEEEEEecccceeccCCcccc--ccccCCCCCceEecccccCCCCc
Confidence 99999999999999999999999998888 8999999999999999999765421 12578999999999999999999
Q ss_pred cEEEeeecCCcccccceeEEEEecCC------CCCHHHHHHHHHHhhhhcCccCCCccccchhhHHHHHHHHHhhhhccc
Q 008882 440 DFYLNSHAGIRGTSRPIHYHVLYDEN------RFSADDLQVLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARYYIEDE 513 (550)
Q Consensus 440 dFyL~Sh~~~qGTarPt~Y~Vl~d~~------~~~~d~lq~lt~~Lc~~y~~~~~~vslPaPl~yA~~~a~R~r~~~~~~ 513 (550)
||||+||.++|||+||+||+||+||+ +++.|+||+|||+|||+|+||+++||||+|+||||++|+|||+|+...
T Consensus 323 dFyL~Sh~~~qGTarPthY~Vl~de~f~~~~~~~~~d~lq~lTy~Lc~~y~r~t~sVsipaP~yYAh~~a~R~r~~l~~~ 402 (437)
T 2yhb_A 323 DFFLQAHASLQGTARSAHYTVLVDEIFRADYGNKAADTLEQLTHDMCYLFGRATKAVSICPPAYYADLVCDRARIHQKEL 402 (437)
T ss_dssp -----------------CEEEEEESSHHHHHGGGHHHHHHHHHHHHHTC----------CHHHHHHHHHHHHHHHHCHHH
T ss_pred eEEEEecccccccCCceEEEEEeCCccccccCCCCHHHHHHHHHHHHHhhccccCCCCcCCHHHHHHHHHHHHHHHhhhh
Confidence 99999999999999999999999998 899999999999999999999999999999999999999999999764
Q ss_pred cCCCCCCCCCCCCccccccCCCCccccccCCCCeeeC
Q 008882 514 TSAGGSTGGSRSTADRNLAIRPLPVIKDNVKDVMFYC 550 (550)
Q Consensus 514 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~ 550 (550)
.++..++++.++ ..... .....++|++|+++||||
T Consensus 403 ~~~~~~~~~~~~-~~~~~-~~~~~~~~~~l~~~mfyl 437 (437)
T 2yhb_A 403 FDALDENDSVKT-DDFAR-WGNSGAVHPNLRNSMYYI 437 (437)
T ss_dssp HHHHHHTSCCCH-HHHHH-HHHHTSCCGGGTTSCTTC
T ss_pred ccCCCCCCccCC-CCccc-cccccccCHhhcCCceeC
Confidence 332211111110 11001 123567999999999998
No 2
>4f3t_A Protein argonaute-2; hydrolase/gene regulation, RNAI, slicer, hydrolase-RNA; 2.25A {Homo sapiens} PDB: 4ei1_A 4ei3_A* 1r4k_A 1si2_A 1si3_A
Probab=100.00 E-value=7.8e-91 Score=799.00 Aligned_cols=390 Identities=48% Similarity=0.780 Sum_probs=330.7
Q ss_pred HHHHHHHHhhhccccceeeccCCcccccCCChhHHHHHHHHHHHHhhhcCCCceEEEEEeCCCCChhHHHHHHhhhhcCc
Q 008882 137 ANHFMVQLAERDIHHYDVFNPRPVIPISSSNPNQIEKALVDVHNRTTQQGKQLQLLIIILPDVSGSYGRIKRVCETELGI 216 (550)
Q Consensus 137 an~F~~~L~~~~~~~Gm~I~~~p~v~~~~~~~~~ve~~L~~i~~~~~~~~~~~~lvlvIlp~~~~~Y~~IK~~~~~~~GI 216 (550)
++.|+..|.+.|+.+||.|.++|.+.......+.++..++.+.+. ..+++|||||+|++.+.|..||++||++.||
T Consensus 469 ~~~f~~~L~~~~~~~G~~i~~~p~~~~~~~~~~~~~~~~~~l~~~----~~~~qlvl~Ilp~~~~~Y~~IK~~~~~~~gI 544 (861)
T 4f3t_A 469 LKSFTEQLRKISRDAGMPIQGQPCFCKYAQGADSVEPMFRHLKNT----YAGLQLVVVILPGKTPVYAEVKRVGDTVLGM 544 (861)
T ss_dssp HHHHHHHHHHHHHHHTCCBCSCCSEEEECCSSSSHHHHHHHHHHH----STTCCEEEEEESSSCTHHHHHHHHHHHTSCC
T ss_pred HHHHHHHHHHHHhhCCcccCCCCeEEEecCchHHHHHHHHHHHhh----cCCCcEEEEEeCCCccHHHHHHHHhcccCCc
Confidence 689999999999999999986554322222345667777766543 2478999999997654599999999999999
Q ss_pred eeeeecccccccCChhhHHHHHHHHHHhcCCcceeecccccccCCccCCCCeEEEEEeecCCCCCCCCCCcEEEEEEeec
Q 008882 217 VSQCCQPRQASRLNIPYFENVALKINVKVGGRNTVLVDAVQKRIPLVTDRPTIIFGSDVTHPQPGEDSSPSIAAVVASMD 296 (550)
Q Consensus 217 ~TQ~I~~~t~~k~~~~~~~Ni~lKINaKlGG~n~~l~~~~~~~lP~~~~~~tmIIGiDVsh~~~~~~~~pSi~avVaS~d 296 (550)
+||||..+++.|.+++++.||++|||+||||+||.+.+. ..|.+...+|||||+||+|++++....||++|||||+|
T Consensus 545 ~TQcv~~~~~~k~~~q~~~ni~lKiN~KlGG~n~~l~~~---~~~~~~~~~tmiiG~DV~H~~~~~~~~pSiaa~vaS~d 621 (861)
T 4f3t_A 545 ATQCVQMKNVQRTTPQTLSNLCLKINVKLGGVNNILLPQ---GRPPVFQQPVIFLGADVTHPPAGDGKKPSIAAVVGSMD 621 (861)
T ss_dssp EEEEEETHHHHSCCHHHHHHHHHHHHHHTTCBCCEECST---TSCGGGGSCEEEEEEEEECCC----CCCEEEEEEEECS
T ss_pred ceEEEEecccccccHHHHHHHHHHHHHhcCCcceecccc---ccccccCCceEEEEEEecccCCCCCCCceEEEEEEEcC
Confidence 999999999988899999999999999999999988643 23444467999999999999987667899999999999
Q ss_pred CCCCcceeeEEEeccCchhhhhhhhcccCCCCCCCchhHHHHHHHHHHHHhcCCCCceEEEEecCCCchhHHHHHHHHHH
Q 008882 297 WPEVTKYRGLVSAQAHNQEIIQDLYKSTQDPFGGSVHGGMIRELLIAFRRSTNLKPHRIIFYRDGVGEGQFSQVLLHEMS 376 (550)
Q Consensus 297 ~~~~~~y~s~~~~Q~~~~e~i~~l~~~~~~~~~~~~~~~~~~~~L~~f~~~~~~~P~~IIiyRdGvsegq~~~v~~~Ev~ 376 (550)
.++++|.+.+++|..++|+|++| ++|++++|+.|++.++.+|++|||||||||||||.+|+++|++
T Consensus 622 -~~~~~y~~~~~~Q~~~~E~i~~l-------------~~~~~~~L~~~~~~~~~~P~~IiiyRDGVsegq~~~v~~~Ev~ 687 (861)
T 4f3t_A 622 -AHPNRYCATVRVQQHRQEIIQDL-------------AAMVRELLIQFYKSTRFKPTRIIFYRDGVSEGQFQQVLHHELL 687 (861)
T ss_dssp -SSSCCEEEEEEEESTTCCSCTTH-------------HHHHHHHHHHHHHHHSCCCSEEEEEEESCCGGGHHHHHHHHHH
T ss_pred -CCcceEEEEEEEcCCCccHHHHH-------------HHHHHHHHHHHHHHhCCCCceEEEEecCCChHHHHHHHHHHHH
Confidence 78999999999999999999988 8999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCCCCCEEEEEEeecccCccCcCCCCCCCCCCCCCCCCCeeeecccccCCCcccEEEeeecCCcccccce
Q 008882 377 AIRQACASLEEGYAPPVTFVVVQKRHHTRLFPAEHNNRDLTDRSGNILPGTVVDTQICHPTQFDFYLNSHAGIRGTSRPI 456 (550)
Q Consensus 377 ~i~~a~~~~~~~y~P~it~Ivv~Krh~~Rff~~~~~~~~~~~~~~N~~pGTvVd~~it~p~~~dFyL~Sh~~~qGTarPt 456 (550)
+|++||.++..+|+|+||||||+||||+|||+.+.+ +..++.+|++||||||++||+|..+||||+||.++|||+|||
T Consensus 688 ~i~~a~~~~~~~~~P~it~Ivv~Krh~tRff~~~~~--~~~~~~~N~~pGTvVD~~it~p~~~dFyL~Sh~~~qGTarPt 765 (861)
T 4f3t_A 688 AIREACIKLEKDYQPGITFIVVQKRHHTRLFCTDKN--ERVGKSGNIPAGTTVDTKITHPTEFDFYLCSHAGIQGTSRPS 765 (861)
T ss_dssp HHHHHHHHHCTTCCCEEEEEEEECCSCCCEEESSGG--GCBTTTTBCCTTEEECSSSSCSSBCEEEEECSCCCSSCCCCE
T ss_pred HHHHHHHHhccCCCCcEEEEEEEccccceeeecCCc--ccccccCCCCCceeccCccccCCCCEEEEEEEecccccccCc
Confidence 999999999889999999999999999999997653 123568999999999999999999999999999999999999
Q ss_pred eEEEEecCCCCCHHHHHHHHHHhhhhcCccCCCccccchhhHHHHHHHHHhhhhccccCCCCCCCC---CCCCccccccC
Q 008882 457 HYHVLYDENRFSADDLQVLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARYYIEDETSAGGSTGG---SRSTADRNLAI 533 (550)
Q Consensus 457 ~Y~Vl~d~~~~~~d~lq~lt~~Lc~~y~~~~~~vslPaPl~yA~~~a~R~r~~~~~~~~~~~~~~~---~~~~~~~~~~~ 533 (550)
||+||+||++++.|+||+|||+|||+|+||+++||||+|+||||++|+|||+|+.....+++++++ .+...+...+
T Consensus 766 hY~Vl~d~~~~~~d~lq~lty~Lc~~y~~~t~~vsvpaP~yYA~~~a~R~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~- 844 (861)
T 4f3t_A 766 HYHVLWDDNRFSSDELQILTYQLCHTYVRCTRSVSIPAPAYYAHLVAFRARYHLVDKEHDSAEGSHTSGQSNGRDHQAL- 844 (861)
T ss_dssp EEEEEEETTCCCHHHHHHHHHHHTTCCTTSSBCCSSCHHHHHHHHHHHHHHHHHCCC----------------CCSTTH-
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHhhhhhccCCCCCCchHHHHHHHHHHHHHHhhccccccCCccccccCCCcccchhhh-
Confidence 999999999999999999999999999999999999999999999999999999764433222211 1111111111
Q ss_pred CCCccccccCCCCeeeC
Q 008882 534 RPLPVIKDNVKDVMFYC 550 (550)
Q Consensus 534 ~~~~~~~~~~~~~m~~~ 550 (550)
.....+|++++++||||
T Consensus 845 ~~~~~vh~~~~~~M~y~ 861 (861)
T 4f3t_A 845 AKAVQVHQDTLRTMYFA 861 (861)
T ss_dssp HHHTCCCHHHHTTTTTC
T ss_pred hhhhhhhhhhccCceeC
Confidence 11346999999999997
No 3
>4f1n_A Kpago; argonaute, RNAI, RNAse H, RNA binding protein-RNA complex; 3.19A {Vanderwaltozyma polyspora}
Probab=100.00 E-value=2.2e-87 Score=772.39 Aligned_cols=391 Identities=31% Similarity=0.531 Sum_probs=325.5
Q ss_pred hHHHHHHHHhhhccccceeeccC--Cccc---------ccCC--------------------------ChhHHHHHHHHH
Q 008882 136 RANHFMVQLAERDIHHYDVFNPR--PVIP---------ISSS--------------------------NPNQIEKALVDV 178 (550)
Q Consensus 136 ~an~F~~~L~~~~~~~Gm~I~~~--p~v~---------~~~~--------------------------~~~~ve~~L~~i 178 (550)
.+..|+..|.+.|+.+||.|.++ |.+. +... .....+..|..+
T Consensus 595 ~~~~~~~~f~~~~~~~Gm~i~~~~~p~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 674 (1046)
T 4f1n_A 595 ELDISMDKFASDVKQLGVDFNVSGKPILINQFGPPIKKFQGGGRGGRGGRGSRGGRGGRGAPSGPPTFETSPGEISLLNL 674 (1046)
T ss_dssp HHHHHHHHHHHHHHTTTCCEECCSCCEEEESCCSCBC----------------------------CCCBCCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCccCCCCCCccccccccccccccccccccccccccccccccccccccccccccchHHHHHHHH
Confidence 46799999999999999999763 3210 0000 002345667776
Q ss_pred HHHhhhcCCCceEEEEEeCCC-CCh-hHHHHHHhhhhcCceeeeecccccccCChhhHHHHHHHHHHhcCCcceeecccc
Q 008882 179 HNRTTQQGKQLQLLIIILPDV-SGS-YGRIKRVCETELGIVSQCCQPRQASRLNIPYFENVALKINVKVGGRNTVLVDAV 256 (550)
Q Consensus 179 ~~~~~~~~~~~~lvlvIlp~~-~~~-Y~~IK~~~~~~~GI~TQ~I~~~t~~k~~~~~~~Ni~lKINaKlGG~n~~l~~~~ 256 (550)
++.. .+++|||||+|++ +.+ |..||++||++.||+||||..+++.|.+.+|++||+||||+||||+||.|+..
T Consensus 675 ~~~~----~~~~lvl~Ilp~~~~~~~Y~~IK~~~d~~~gV~TQcv~~~t~~k~~~q~~~NI~lKiN~KLGG~n~~l~~~- 749 (1046)
T 4f1n_A 675 LENI----PSNTYILYVLRRGNDSAVYDRLKYITDLKFGALNSCVVWDNFKKNSIQYNSNVVMKMNLKLLGSNHSLSIE- 749 (1046)
T ss_dssp HHTC----CTTEEEEEEESSSCCHHHHHHHHHHHTTTTCCCEEEEEHHHHTTCCHHHHHHHHHHHHHHTTCBCCEECTT-
T ss_pred HHhc----CCCCEEEEEecCCCCchHHHHHHHHhhccCCcccEEEehhhhccccHHHHHHHHHHHHHhcCCeeeecccc-
Confidence 6642 4789999999998 445 99999999999999999999999998899999999999999999999999764
Q ss_pred cccCCccC----CCCeEEEEEeecCCCCCCCCCCcEEEEEEeecCCCCcceeeEEEeccC-chhhhhhhhcccCCCCCCC
Q 008882 257 QKRIPLVT----DRPTIIFGSDVTHPQPGEDSSPSIAAVVASMDWPEVTKYRGLVSAQAH-NQEIIQDLYKSTQDPFGGS 331 (550)
Q Consensus 257 ~~~lP~~~----~~~tmIIGiDVsh~~~~~~~~pSi~avVaS~d~~~~~~y~s~~~~Q~~-~~e~i~~l~~~~~~~~~~~ 331 (550)
.++++. ..+|||||+||+|++.+ ..+||+|||||+| .++++|.+.+++|.. ++|+|++|
T Consensus 750 --~~~~l~~~~~~~ptMiiG~DVtH~p~~--~~~SiaavVaS~d-~~~t~y~s~~~~Q~~~~~Eii~~L----------- 813 (1046)
T 4f1n_A 750 --NNKLLIDKESNLPILVLGSDVTHYPEK--DQNSIASLVGSYD-DKFTQFPGDYMLQDGPGEEIITNV----------- 813 (1046)
T ss_dssp --GGGGGEETTTTEECEEEEEEEECCSST--TCEEEEEEEECCS-SSCCCCCEEEEEEEEETCCSCTTG-----------
T ss_pred --ccccccccccCCceEEEeeeeecCCCC--CCCeeeEEEEEEC-CCcCeEeeEEEEecCCCccHHHHH-----------
Confidence 233332 34699999999995433 2469999999999 789999999999998 99999987
Q ss_pred chhHHHHHHHHHHHHh-cCCCCceEEEEecCCCchhHHHHHHHHHHHHHHHHHhhc------CCCCCCEEEEEEeecccC
Q 008882 332 VHGGMIRELLIAFRRS-TNLKPHRIIFYRDGVGEGQFSQVLLHEMSAIRQACASLE------EGYAPPVTFVVVQKRHHT 404 (550)
Q Consensus 332 ~~~~~~~~~L~~f~~~-~~~~P~~IIiyRdGvsegq~~~v~~~Ev~~i~~a~~~~~------~~y~P~it~Ivv~Krh~~ 404 (550)
++||.++|+.|++. ++.+|++|||||||||||||.+|+++|+++|++||.++. .+|+|+||||||+||||+
T Consensus 814 --~~~~~~~L~~y~~~n~~~lP~~IIiYRDGVSEGQf~~Vl~~Ev~~Ik~a~~~~~~~~~~~~~y~Pkit~IVV~KRhht 891 (1046)
T 4f1n_A 814 --GSLMLNRLKIYQKHNNGKLPTKIMYFRDGVSVDQFSQVVKIEVKSIKESVRKFGPQLNGGNKYDPPVTCIATVKRNQV 891 (1046)
T ss_dssp --GGGHHHHHHHHHHTTTTCCCSSEEEEEESCCGGGHHHHHHTHHHHHHHHHHHHTHHHHTSCCCCCCEEEEEEECSCSC
T ss_pred --HHHHHHHHHHHHHhcCCCCCcEEEEEecCCchHHHHHHHHHHHHHHHHHHHHhhhhcccccCCCCCEEEEEEecCccc
Confidence 89999999999998 789999999999999999999999999999999999884 579999999999999999
Q ss_pred ccCcCCCCCCCCC------CCCCCCCCeeeecccccCCCcccEEEeeecCCcccccceeEEEEecCCCCCHHHHHHHHHH
Q 008882 405 RLFPAEHNNRDLT------DRSGNILPGTVVDTQICHPTQFDFYLNSHAGIRGTSRPIHYHVLYDENRFSADDLQVLTNN 478 (550)
Q Consensus 405 Rff~~~~~~~~~~------~~~~N~~pGTvVd~~it~p~~~dFyL~Sh~~~qGTarPt~Y~Vl~d~~~~~~d~lq~lt~~ 478 (550)
|||+.+.+..|.. +..+|++||||||++||+|..+||||+||.++|||+|||||+||+||++++.|+||+|||+
T Consensus 892 RfF~~~~~~~d~~g~~~~~~~~~N~~pGTVVD~~It~p~~~DFyL~Sh~~~qGTarPthY~VL~De~~~~~d~lQ~LTy~ 971 (1046)
T 4f1n_A 892 RFIPIQENAKNEKGEEVAVQSMGNVMPGTVVDRGITSVAHFDFFIQSHQALKGTGVPCHYWCLYDENQSTSDYLQEICNN 971 (1046)
T ss_dssp CEEECCSEEECTTSCEEECEETTEECTTEEECSSSSCSSBEEEEEECSCCCSSSCCCEEEEEEEESSCCCHHHHHHHHHH
T ss_pred eeeeccccccccccccccccccCCCCCCcEeeccccccCcceEEEEccccCCCcccCcEEEEEeCCCCCCHHHHHHHHHH
Confidence 9999754211111 1368999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcCccCCCccccchhhHHHHHHHHHhhhhccccCC----CCCCCCCCCCccccccCCCCccccccCCCCeeeC
Q 008882 479 LCYTYARCTRSVSIVPPAYYAHLAAFRARYYIEDETSA----GGSTGGSRSTADRNLAIRPLPVIKDNVKDVMFYC 550 (550)
Q Consensus 479 Lc~~y~~~~~~vslPaPl~yA~~~a~R~r~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~ 550 (550)
|||+|+||+++||||+|+||||++|+|||+|+...+.+ .++..++..... ....++++.||++++++||||
T Consensus 972 LC~~y~r~t~sVsvPaP~yYAhlla~R~r~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~mf~i 1046 (1046)
T 4f1n_A 972 LCYIFGRSTTSVKVPAPVYYADLLCTRATCFFKAGFELNMAQAPKEKGSKDQPT-VSKNVLLPQVNDNIKSVMYYI 1046 (1046)
T ss_dssp TTSCCTTSSBCCSSCHHHHHHHHHHHHHHHHHHHTSHHHHHCC----------C-CCHHHHSCCCCGGGTTSCTTC
T ss_pred HhhhhcccCCCccccHHHHHHHHHHHHHHHHHHhhhhccccccccccCCccccc-cCcccccchhhhhhccceeeC
Confidence 99999999999999999999999999999999865422 222111111111 111245889999999999998
No 4
>2yha_A Post-transcriptional gene silencing protein QDE-2; RNA binding protein, argonaute, miRNA, siRNA; HET: GOL; 1.85A {Neurospora crassa} PDB: 2xdy_A
Probab=100.00 E-value=1.8e-77 Score=633.55 Aligned_cols=337 Identities=29% Similarity=0.483 Sum_probs=271.2
Q ss_pred hHHHHHHHHhhhccccceeeccCC---cccccCCChhHHHHHHHHHHHHhhhcCCCceEEEEEeCCCCCh-hHHHHHHhh
Q 008882 136 RANHFMVQLAERDIHHYDVFNPRP---VIPISSSNPNQIEKALVDVHNRTTQQGKQLQLLIIILPDVSGS-YGRIKRVCE 211 (550)
Q Consensus 136 ~an~F~~~L~~~~~~~Gm~I~~~p---~v~~~~~~~~~ve~~L~~i~~~~~~~~~~~~lvlvIlp~~~~~-Y~~IK~~~~ 211 (550)
.++.|+..|.+.++.+||.|.++. .+.........+ .+++.... .+++|||||+|+++.+ |..||++||
T Consensus 30 ~~~~f~~~l~~~~~~~G~~i~~p~~~~~~~~~~~~~~~~--~~~~~~~~-----~~~~lvl~ilp~~~~~~Y~~iK~~~~ 102 (388)
T 2yha_A 30 GVPQAMTAFAEFLNRTGIPINPRFSPGMSMSVPGSEKEF--FAKVKELM-----SSHQFVVVLLPRKDVAIYNMVKRAAD 102 (388)
T ss_dssp CHHHHHHHHHHHHHHTTCCBCSCCCCCEEEECCSSHHHH--HHHHHHHH-----HTCSEEEEEESSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCEeCCCCCcceecCCCchHHHh--HHHHhhcc-----CCCeEEEEEECCCChhHHHHHHHHHh
Confidence 478999999999999999997653 111222222222 23333221 3799999999998776 999999999
Q ss_pred hhcCceeeeecccccccCChh--hHHHHHHHHHHhcCCcceeecccccccCCccCCCCeEEEEEeecCCC---CC--CCC
Q 008882 212 TELGIVSQCCQPRQASRLNIP--YFENVALKINVKVGGRNTVLVDAVQKRIPLVTDRPTIIFGSDVTHPQ---PG--EDS 284 (550)
Q Consensus 212 ~~~GI~TQ~I~~~t~~k~~~~--~~~Ni~lKINaKlGG~n~~l~~~~~~~lP~~~~~~tmIIGiDVsh~~---~~--~~~ 284 (550)
++.||+||||..+++.|.+++ +++||++|||+||||+||.|+.. +|++.+.+|||||+||+|++ ++ ...
T Consensus 103 ~~~GI~TQcv~~~~~~k~~~q~s~~~NI~lKiN~KlGG~n~~l~~~----~~~~~~~~tmiiG~DV~H~~~~~~g~~~~~ 178 (388)
T 2yha_A 103 ITFGVHTVCCVAEKFLSTKGQLGYFANVGLKVNLKFGGTNHNIKTP----IPLLAKGKTMVVGYDVTHPTNLAAGQSPAS 178 (388)
T ss_dssp TTTCCEEEEEEHHHHHCSTTHHHHHHHHHHHHHHHTTCBCCCCCSC----CHHHHTSCEEEEEEEEECSCCCSSSSCCTT
T ss_pred ccCCCceEEEehhhhcCcCcHHHHHHHHHHHHHHHhCCcceecccc----ccccCCCCEEEEEEEEecccccCCCCcCCC
Confidence 999999999999999888888 99999999999999999999753 45565679999999999998 66 446
Q ss_pred CCcEEEEEEeecCCCCcceeeEEEecc-CchhhhhhhhcccCCCCCCCchhHHHHHHHHHHHH---hcCCCCceEEEEec
Q 008882 285 SPSIAAVVASMDWPEVTKYRGLVSAQA-HNQEIIQDLYKSTQDPFGGSVHGGMIRELLIAFRR---STNLKPHRIIFYRD 360 (550)
Q Consensus 285 ~pSi~avVaS~d~~~~~~y~s~~~~Q~-~~~e~i~~l~~~~~~~~~~~~~~~~~~~~L~~f~~---~~~~~P~~IIiyRd 360 (550)
.||++|||+|+| .++++|.+.+++|. .++|+|++| ++|++++|+.|++ +++.+|++||||||
T Consensus 179 ~pSiaavVaS~d-~~~~~y~~~~~~Q~~~~~E~i~~l-------------~~~~~~~L~~~~~~~~~~~~~P~rIiiyRD 244 (388)
T 2yha_A 179 APSIVGLVSTID-QHLGQWPAMVWNNPHGQESMTEQF-------------TDKFKTRLELWRSNPANNRSLPENILIFRD 244 (388)
T ss_dssp SCEEEEEEECCS-TTCCCCCEEEEEETTTHHHHHHHH-------------HHHHHHHHHHHHHSGGGTTCCCSEEEEEEE
T ss_pred CCEEEEEEEEcC-CCCCEEEEEEEEcCCCcccHHHHH-------------HHHHHHHHHHHHHhhhhcCCCCceEEEEec
Confidence 799999999999 99999999999999 999999988 8999999999999 88999999999999
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHhhcCCC-CCCEEEEEEeecccCccCcCCCCCCCCCCCCCCCCCeeeecccccCCCcc
Q 008882 361 GVGEGQFSQVLLHEMSAIRQACASLEEGY-APPVTFVVVQKRHHTRLFPAEHNNRDLTDRSGNILPGTVVDTQICHPTQF 439 (550)
Q Consensus 361 Gvsegq~~~v~~~Ev~~i~~a~~~~~~~y-~P~it~Ivv~Krh~~Rff~~~~~~~~~~~~~~N~~pGTvVd~~it~p~~~ 439 (550)
|||||||.+|+++|+++|++||.++..+| +|+||||||+||
T Consensus 245 GVseGQf~~V~~~El~~i~~a~~~~~~~~~~P~it~Ivv~Kr-------------------------------------- 286 (388)
T 2yha_A 245 GVSEGQFQMVIKDELPLVRAACKLVYPAGKLPRITLIVSVKG-------------------------------------- 286 (388)
T ss_dssp SCCGGGHHHHHHHTHHHHHHHHHHHSCTTCCCEEEEEEEC----------------------------------------
T ss_pred CcChhHHHHHHHHHHHHHHHHHHHhhcccCCCcEEEEEeccc--------------------------------------
Confidence 99999999999999999999999998888 899999999997
Q ss_pred cEEEeeecCCcccccceeEEEEecCC------CCCHHHHHHHHHHhhhhcCccCCCccccchhhHHHHHHHHHhhhhccc
Q 008882 440 DFYLNSHAGIRGTSRPIHYHVLYDEN------RFSADDLQVLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARYYIEDE 513 (550)
Q Consensus 440 dFyL~Sh~~~qGTarPt~Y~Vl~d~~------~~~~d~lq~lt~~Lc~~y~~~~~~vslPaPl~yA~~~a~R~r~~~~~~ 513 (550)
+|||||+||+||+ +++.|+||+|||+|||+|+||+++||||+|+||||++|+|||+|+...
T Consensus 287 -------------arPthY~Vl~De~f~~~~~~~~~d~lq~lty~Lc~~y~r~t~sVsipaP~yYAh~~a~R~r~~l~~~ 353 (388)
T 2yha_A 287 -------------SGSAHYTVLVDEIFRADYGNKAADTLEQLTHDMCYLFGRATKAVSICPPAYYADLVCDRARIHQKEL 353 (388)
T ss_dssp -----------------CEEEEEESSHHHHHGGGHHHHHHHHHHHHHHC----------CHHHHHHHHHHHHHHHHCHHH
T ss_pred -------------cCCceEEEEeCCccccccCCCCHHHHHHHHHHHHHHhhcccCCCCcCcHHHHHHHHHHHHHHHhhhh
Confidence 9999999999998 899999999999999999999999999999999999999999999865
Q ss_pred cCCCCCCCCCCCCccccccCCCCccccccCCCCeeeC
Q 008882 514 TSAGGSTGGSRSTADRNLAIRPLPVIKDNVKDVMFYC 550 (550)
Q Consensus 514 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~ 550 (550)
.++.+++++.+. ..... .....++|++|+++||||
T Consensus 354 ~~~~~~~~~~~~-~~~~~-~~~~~~~~~~l~~~mfyl 388 (388)
T 2yha_A 354 FDALDENDSVKT-DDFAR-WGNSGAVHPNLRNSMYYI 388 (388)
T ss_dssp HHHHTTCSCCCH-HHHHH-HHHHTCCCGGGTTSCTTC
T ss_pred ccCCCcccccCC-Ccccc-cccccccCHHhcCCceeC
Confidence 433222211111 11001 123568999999999998
No 5
>1yvu_A Hypothetical protein AQ_1447; RNAse H fold, RNA binding protein, gene regulation; 2.90A {Aquifex aeolicus} SCOP: b.34.14.1 c.55.3.10 PDB: 2f8s_A 2f8t_A 2nub_A
Probab=100.00 E-value=8.9e-63 Score=553.28 Aligned_cols=316 Identities=17% Similarity=0.162 Sum_probs=258.2
Q ss_pred hHHHHHHHHhhhccccceeeccCCcccccCCChhHHHHHHHHHHHHhhhcCCCceEEEEEeCCC-------CCh-hHHHH
Q 008882 136 RANHFMVQLAERDIHHYDVFNPRPVIPISSSNPNQIEKALVDVHNRTTQQGKQLQLLIIILPDV-------SGS-YGRIK 207 (550)
Q Consensus 136 ~an~F~~~L~~~~~~~Gm~I~~~p~v~~~~~~~~~ve~~L~~i~~~~~~~~~~~~lvlvIlp~~-------~~~-Y~~IK 207 (550)
.++.|+..|.+.|+.+||.|..++...... +.+++.++.+..... ...+++|||||+|++ +.+ |..||
T Consensus 368 ~~~~f~~~L~~~~~~~G~~i~~p~~~~~~~---~~~~~~~~~l~~~~~-~~~~~qlvlvIlp~~~~~~~~~~~~~Y~~IK 443 (706)
T 1yvu_A 368 RKEEFLKELINFLKNKGIKLKIKGKSLILA---QTREEAKEKLIPVIN-KIKDVDLVIVFLEEYPKVDPYKSFLLYDFVK 443 (706)
T ss_dssp HHHHHHHHHHHHHHTTTCEEEEEEEEEEEC---SSTTHHHHHHHHHHT-TTSSCSEEEEEEC----------CHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCceecCCccccccc---hhHHHHHHHHHHHhc-ccCCCcEEEEEECCccccccccCccHHHHHH
Confidence 478999999999999999997653332222 233444554443321 135799999999997 555 99999
Q ss_pred HHhhhhcCceeeeecccccccC-ChhhHHHHHHHHHHhcCCcceeecccccccCCccCCCCeEEEEEeecCCCCCCCCCC
Q 008882 208 RVCETELGIVSQCCQPRQASRL-NIPYFENVALKINVKVGGRNTVLVDAVQKRIPLVTDRPTIIFGSDVTHPQPGEDSSP 286 (550)
Q Consensus 208 ~~~~~~~GI~TQ~I~~~t~~k~-~~~~~~Ni~lKINaKlGG~n~~l~~~~~~~lP~~~~~~tmIIGiDVsh~~~~~~~~p 286 (550)
++| .+.||+||||..+++.+. +.+++.||++|||+||||+||.|... ...+|||||+||+|++... ..+
T Consensus 444 ~~~-~~~GI~TQcv~~~tl~~~~~~q~~~NI~lkiN~KLGG~nw~L~~~--------~~~~tmiIGiDVsH~~~~~-~~p 513 (706)
T 1yvu_A 444 REL-LKKMIPSQVILNRTLKNENLKFVLLNVAEQVLAKTGNIPYKLKEI--------EGKVDAFVGIDISRITRDG-KTV 513 (706)
T ss_dssp HHH-HHTTCCCEEEEHHHHHHSCHHHHHHHHHHHHHHHTTCCSCEESCC--------TTCCSEEEEECEEECCCSS-SCC
T ss_pred HHH-hcCCCceEEEehhhccccchHHHHHHHHHHHHHHhCCeeeeeccC--------CCCceEEEEEEEeccCCCC-CCc
Confidence 985 499999999999998764 57899999999999999999998742 1357999999999997433 358
Q ss_pred cEEEEEEeecCCC--CcceeeEEEeccCchhhhhhhhcccCCCCCCCchhHHHHHHHHHHHHhcCCCCceEEEEecCCCc
Q 008882 287 SIAAVVASMDWPE--VTKYRGLVSAQAHNQEIIQDLYKSTQDPFGGSVHGGMIRELLIAFRRSTNLKPHRIIFYRDGVGE 364 (550)
Q Consensus 287 Si~avVaS~d~~~--~~~y~s~~~~Q~~~~e~i~~l~~~~~~~~~~~~~~~~~~~~L~~f~~~~~~~P~~IIiyRdGvse 364 (550)
|++|+|+|+| .+ +++|.+....| .++|++++ ++..+|+.|.+.++.+|++||||||||||
T Consensus 514 Sv~g~vas~d-~~g~~~~~~~~~~~q-~~~ei~~~----------------l~~~~l~~~~~~~~~~P~rIIiyRDGVse 575 (706)
T 1yvu_A 514 NAVAFTKIFN-SKGELVRYYLTSYPA-FGEKLTEK----------------AIGDVFSLLEKLGFKKGSKIVVHRDGRLY 575 (706)
T ss_dssp CEEEEEEEEC-TTSCEEEEEEEEECS-CTTHHHHH----------------HHHHHHHHHHHTTCCTTCEEEEEESSCCC
T ss_pred eEEEEEEEEc-CCCCEEEEEEEeccc-ccchHHHH----------------HHHHHHHHHHHhcCCCCcEEEEEeCCCCc
Confidence 9999999999 44 56777665544 46787754 45667788888888999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHhhcCCCCCCEEEEEEeecccCccCcCCCCCCCCCCCCCCCCCeeeecccccCCCcccEEEe
Q 008882 365 GQFSQVLLHEMSAIRQACASLEEGYAPPVTFVVVQKRHHTRLFPAEHNNRDLTDRSGNILPGTVVDTQICHPTQFDFYLN 444 (550)
Q Consensus 365 gq~~~v~~~Ev~~i~~a~~~~~~~y~P~it~Ivv~Krh~~Rff~~~~~~~~~~~~~~N~~pGTvVd~~it~p~~~dFyL~ 444 (550)
++|+++|++||.+ |.|+||||+|+||||+|||+. .||+||||||. ..+||||+
T Consensus 576 -------~~El~~Ik~A~~~----~~pkit~IvV~Krh~tRfF~~-----------~np~pGTvVD~-----~~~~ffL~ 628 (706)
T 1yvu_A 576 -------RDEVAAFKKYGEL----YGYSLELLEIIKRNNPRFFSN-----------EKFIKGYFYKL-----SEDSVILA 628 (706)
T ss_dssp -------HHHHHHHHHHHHH----HTCEEEEEEEECSSCCCEECS-----------CSCCTTEEEEB-----SSSEEEEC
T ss_pred -------HHHHHHHHHHHHH----cCCcEEEEEEEeccCeeEECC-----------CCCCCeEEEEc-----CCCeEEEE
Confidence 7899999999987 479999999999999999985 25999999994 45788888
Q ss_pred eec-CCcccccceeEEEEecCCCCCHHHHHHHHHHhhhhcCccCCCccccchhhHHHHHHHHHhhhhcc
Q 008882 445 SHA-GIRGTSRPIHYHVLYDENRFSADDLQVLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARYYIED 512 (550)
Q Consensus 445 Sh~-~~qGTarPt~Y~Vl~d~~~~~~d~lq~lt~~Lc~~y~~~~~~vslPaPl~yA~~~a~R~r~~~~~ 512 (550)
+|. +.|||+||+||+|+++|. +.|+||+|||+|||+|++|+++||||+|+||||++|+|++.+++.
T Consensus 629 ss~~~~qGT~rPthY~vv~~D~--~~d~Lq~lty~Lc~ly~r~t~svslPaPiyYAhllA~r~~~~~~p 695 (706)
T 1yvu_A 629 TYNQVYEGTHQPIKVRKVYGEL--PVEVLCSQILSLTLMNYSSFQPIKLPATVHYSDKITKLMLRGIEP 695 (706)
T ss_dssp CSCCCSTTCCCCEEEEEEECSS--CHHHHHHHHHHGGGGGCCSSSCCCSCTTTTTHHHHHHHHHTCSSC
T ss_pred ecCCccCCCCCCEEEEEEeCCC--CHHHHHHHHHHHHHhccccCCCcccChHHHHHHHHHHHHHhcCCc
Confidence 765 499999999999555554 899999999999999999999999999999999999999998863
No 6
>3ho1_A Argonaute; argonaute, protein-DNA-RNA complex, nucleic acid binding Pro RNA complex; 2.60A {Thermus thermophilus} PDB: 3dlb_A* 3dlh_A* 3f73_A* 3hm9_A 3hvr_A 3hxm_A* 3hk2_A 3hjf_A
Probab=100.00 E-value=1.4e-56 Score=496.02 Aligned_cols=305 Identities=19% Similarity=0.195 Sum_probs=238.9
Q ss_pred hHHHHHHHHhhhccccceeeccCCcccccCCChhHHHHHHHHHHHHhhhcCCCceEEEEEeCCCCCh-hHHHHHHhhhhc
Q 008882 136 RANHFMVQLAERDIHHYDVFNPRPVIPISSSNPNQIEKALVDVHNRTTQQGKQLQLLIIILPDVSGS-YGRIKRVCETEL 214 (550)
Q Consensus 136 ~an~F~~~L~~~~~~~Gm~I~~~p~v~~~~~~~~~ve~~L~~i~~~~~~~~~~~~lvlvIlp~~~~~-Y~~IK~~~~~~~ 214 (550)
.++.|+..|.+.+..+||.|..+....... +...+...|++..+ .++|+||||+|++.++ |..||++| .+.
T Consensus 357 ~~~~f~~~L~~va~~~G~~i~~~~~~~~~~-d~~~~~~~l~~~~~------~~~qlvvvIlp~~~~~~y~~IKk~~-~~~ 428 (685)
T 3ho1_A 357 WPEFLRRALLRAFGASGASLRLHTLHAHPS-QGLAFREALRKAKE------EGVQAVLVLTPPMAWEDRNRLKALL-LRE 428 (685)
T ss_dssp CCHHHHHHHHHHHHSSSSCEEEEECCCCGG-GTHHHHHHHHHHHH------TTCCEEEEEESCCCHHHHHHHHHHH-HHT
T ss_pred HHHHHHHHHHHHHHhCCcEeccceeecCCC-chHHHHHHHHHhhh------cCCCEEEEEECCCCccHHHHHHHHH-hcC
Confidence 468999999999999999997532222211 11234445554433 4799999999999887 99999875 799
Q ss_pred CceeeeecccccccCChhhHHHHHHHHHHhcCCcceeecccccccCCccCCCCeEEEEEeecCCCCCCCCCCcEEEEEEe
Q 008882 215 GIVSQCCQPRQASRLNIPYFENVALKINVKVGGRNTVLVDAVQKRIPLVTDRPTIIFGSDVTHPQPGEDSSPSIAAVVAS 294 (550)
Q Consensus 215 GI~TQ~I~~~t~~k~~~~~~~Ni~lKINaKlGG~n~~l~~~~~~~lP~~~~~~tmIIGiDVsh~~~~~~~~pSi~avVaS 294 (550)
||+||||. +++.+.+.++++||++|||+||||+||.|+. | ..++||||+||+|+. ..++++++++
T Consensus 429 GIpTQcV~-~tl~k~~~~ia~NIaLkINaKLGG~pW~L~~------P---~~~tmiIGiDVsH~~-----~~~~~~~aav 493 (685)
T 3ho1_A 429 GLPSQILN-VPLREEERHRWENALLGLLAKAGLQVVALSG------A---YPAELAVGFDAGGRE-----SFRFGGAACA 493 (685)
T ss_dssp TCCEEEEE-SSCCTTCHHHHHHHHHHHHHHHTCCCCEECS------C---CSCSEEEEEEEEETT-----EEEEEEEEEE
T ss_pred CCccEEEe-cccccccHhHHHHHHHHHHHHhCCeeEEecC------C---CCCeEEEEEEEEcCC-----CCccceEEEE
Confidence 99999999 7777777889999999999999999999874 2 257999999999986 2355565555
Q ss_pred ecC-CCCcceeeEEEeccCchhhhhhhhcccCCCCCCCchhHHHHHHHHHHHHhcCCCCceEEEEecCC-CchhHHHHHH
Q 008882 295 MDW-PEVTKYRGLVSAQAHNQEIIQDLYKSTQDPFGGSVHGGMIRELLIAFRRSTNLKPHRIIFYRDGV-GEGQFSQVLL 372 (550)
Q Consensus 295 ~d~-~~~~~y~s~~~~Q~~~~e~i~~l~~~~~~~~~~~~~~~~~~~~L~~f~~~~~~~P~~IIiyRdGv-segq~~~v~~ 372 (550)
++. ....+| .....|...++.++++ .+++.++|..|++.++.+|++|||||||| +|+|+
T Consensus 494 ~~~dg~~~~~-~~~~~Q~~e~l~~~~L-------------~~~l~eaL~~Y~k~ng~lP~RIIIyRDGV~se~E~----- 554 (685)
T 3ho1_A 494 VGGDGGHLLW-TLPEAQAGERIPQEVV-------------WDLLEETLWAFRRKAGRLPSRVLLLRNGRVPQDEF----- 554 (685)
T ss_dssp ECC--CCCEE-ECCCCCCSCCCHHHHH-------------HHHHHHHHHHHHHHHSSCCSEEEEEECSSSCSGGG-----
T ss_pred EECCCCEEEe-EEEEccCCcEecHHHH-------------HHHHHHHHHHHHHHhCCCCcEEEEEeCCCCCHHHH-----
Confidence 551 333443 2234554433445666 89999999999999999999999999999 78765
Q ss_pred HHHHHHHHHHHhhcCCCCCCEEEEEEeecccCccCcCCCCCCCCCCCCCCCCCeeeecccccCCCcccEEEeee-cCCcc
Q 008882 373 HEMSAIRQACASLEEGYAPPVTFVVVQKRHHTRLFPAEHNNRDLTDRSGNILPGTVVDTQICHPTQFDFYLNSH-AGIRG 451 (550)
Q Consensus 373 ~Ev~~i~~a~~~~~~~y~P~it~Ivv~Krh~~Rff~~~~~~~~~~~~~~N~~pGTvVd~~it~p~~~dFyL~Sh-~~~qG 451 (550)
++|++||.++ .+++|||+|+||||+|||+.+ .++.+||+++. ..++|||.+| .+.+|
T Consensus 555 ---~~I~eAl~~~----~~~~t~IvVqKRh~tRfF~~n----------~pp~~Gt~v~~-----e~d~flL~s~gsv~qG 612 (685)
T 3ho1_A 555 ---ALALEALARE----GIAYDLVSVRKSGGGRVYPVQ----------GRLADGLYVPL-----EDKTFLLLTVHRDFRG 612 (685)
T ss_dssp ---HHHHHHHHHT----TCEEEEEEEESSCCCCEEESS----------SCCCSSEEEEC-----STTEEEEECCCCCSSS
T ss_pred ---HHHHHHHHhc----CCCEEEEEEEecCCceEecCC----------CCCCCeEEEeC-----CCCEEEEEecCCCCcc
Confidence 4567788765 478999999999999999863 24677887742 3344444443 46899
Q ss_pred cccceeEEEEecCCCCCHHHHHHHHHHhhhhcCccC-CCccccchhhHHHHHHHHH
Q 008882 452 TSRPIHYHVLYDENRFSADDLQVLTNNLCYTYARCT-RSVSIVPPAYYAHLAAFRA 506 (550)
Q Consensus 452 TarPt~Y~Vl~d~~~~~~d~lq~lt~~Lc~~y~~~~-~~vslPaPl~yA~~~a~R~ 506 (550)
|++|+||+ +|+++++.|+||++||.|||+|+||+ +++|+|+|+||||++|++.
T Consensus 613 T~rPthy~--~D~~~~s~D~LQ~ltY~Lchmy~nst~~svsvPAP~~YAhklAk~~ 666 (685)
T 3ho1_A 613 TPRPLKLV--HEAGDTPLEALAHQIFHLTRLYPASGFAFPRLPAPLHLADRLVKEV 666 (685)
T ss_dssp CCCCEEEE--EEEECSCHHHHHHHHHHGGGCCSSCSSSCCSSCHHHHHHHHHHHHH
T ss_pred CCceEEEE--ECCCCCCHHHHHHHHHHHHHhhccCCCCCCCcChHHHHHHHHHHHH
Confidence 99999998 89999999999999999999999998 9999999999999999443
No 7
>1u04_A Argonaute, hypothetical protein PF0537; RNAI, silencing, PIWI, PAZ, RISC, slicer, RNAse H hydrolase-gene regulation complex; 2.25A {Pyrococcus furiosus} SCOP: b.34.14.1 c.55.3.10 PDB: 1z25_A 1z26_A
Probab=100.00 E-value=3.2e-55 Score=492.43 Aligned_cols=284 Identities=19% Similarity=0.214 Sum_probs=236.6
Q ss_pred hhHHHHHHHHHHHHhhhcCCCceEEEEEeC-CCCCh-hHHHHHHhhhhcCceeeeecccccccC----C-----hhhHHH
Q 008882 168 PNQIEKALVDVHNRTTQQGKQLQLLIIILP-DVSGS-YGRIKRVCETELGIVSQCCQPRQASRL----N-----IPYFEN 236 (550)
Q Consensus 168 ~~~ve~~L~~i~~~~~~~~~~~~lvlvIlp-~~~~~-Y~~IK~~~~~~~GI~TQ~I~~~t~~k~----~-----~~~~~N 236 (550)
.+.+++.+..+.+... +..++||||+++ .++.+ |..||++| ++.||+||||..+|+.+. + .+++.|
T Consensus 454 ~~~i~~~l~~~~~~~~--~~~~~lvlv~l~~~~~~d~Y~~IK~~~-~~~gIpTQcV~~~Tl~~~~~k~~~~~l~~sia~N 530 (771)
T 1u04_A 454 DKGIIEVVEQVSSFMK--GKELGLAFIAARNKLSSEKFEEIKRRL-FNLNVISQVVNEDTLKNKRDKYDRNRLDLFVRHN 530 (771)
T ss_dssp HHHHHHHHHHHHHHHT--TCSCEEEEEEECTTSCHHHHHHHHHHH-HHTTEEEEEEEHHHHHHCEETTEEEEECHHHHHH
T ss_pred hHHHHHHHHHHHHhcc--CCCCCEEEEEEcCCCCcchHHHHHHHH-hcCCcccEEEecccccCccccccccchhHHHHHH
Confidence 3567788888876643 346899888885 43445 99999987 799999999999998643 2 667899
Q ss_pred HHHHHHHhcCCcceeecccccccCCccCCCCeEEEEEeecCCCCCCCCCCcEEEEEEeecCCCCcceeeEEEeccCchhh
Q 008882 237 VALKINVKVGGRNTVLVDAVQKRIPLVTDRPTIIFGSDVTHPQPGEDSSPSIAAVVASMDWPEVTKYRGLVSAQAHNQEI 316 (550)
Q Consensus 237 i~lKINaKlGG~n~~l~~~~~~~lP~~~~~~tmIIGiDVsh~~~~~~~~pSi~avVaS~d~~~~~~y~s~~~~Q~~~~e~ 316 (550)
|++|||+||||+||.|+.. ..++||||+||+|+.++ ...++++|+|++.| ....+|.+....|..+++
T Consensus 531 IalqIn~KLGG~pW~L~~p---------~~~tmiIGiDV~H~~~~-~~svs~~A~V~s~d-g~~~~~~s~~~~~~~~E~- 598 (771)
T 1u04_A 531 LLFQVLSKLGVKYYVLDYR---------FNYDYIIGIDVAPMKRS-EGYIGGSAVMFDSQ-GYIRKIVPIKIGEQRGES- 598 (771)
T ss_dssp HHHHHHHHTTCBCCEESCC---------CSSSEEEEEEEEEECCT-TTCEEEEEEEEETT-SCEEEEEEEECCCCSSSS-
T ss_pred HHHHHHHHhCCcceeecCC---------CCCEEEEEEEEEcCCCC-CCceEEEEEEECCC-CCEEEEEEEEeecCCccE-
Confidence 9999999999999998642 25899999999998543 34577788888887 666777765444444443
Q ss_pred hhhhhcccCCCCCCCchhHHHHHHHHHHHHh-cCCCCceEEEEecCCCchhHHHHHHHHHHHHHHHHHhhcCCCCCCEEE
Q 008882 317 IQDLYKSTQDPFGGSVHGGMIRELLIAFRRS-TNLKPHRIIFYRDGVGEGQFSQVLLHEMSAIRQACASLEEGYAPPVTF 395 (550)
Q Consensus 317 i~~l~~~~~~~~~~~~~~~~~~~~L~~f~~~-~~~~P~~IIiyRdGvsegq~~~v~~~Ev~~i~~a~~~~~~~y~P~it~ 395 (550)
+. + .+++.++|..|++. ++.+|++|||||||+ ++++|+++|++||.++ .|+|+|
T Consensus 599 i~-l-------------~~~l~~~L~~y~~~n~~~lP~RIIiyRDG~-------v~~~El~~i~ea~~~~----~p~itf 653 (771)
T 1u04_A 599 VD-M-------------NEFFKEMVDKFKEFNIKLDNKKILLLRDGR-------ITNNEEEGLKYISEMF----DIEVVT 653 (771)
T ss_dssp CC-H-------------HHHHHHHHHHHHHTTCCCTTCEEEEECSBC-------CCHHHHHHHHHHHHHH----TCEEEE
T ss_pred Ec-H-------------HHHHHHHHHHHHHHhCCCCCCEEEEEcCCC-------CCHHHHHHHHHHHHhc----CCCEEE
Confidence 32 3 67999999999998 588999999999996 6689999999999875 689999
Q ss_pred EEEeecccCccCcCCCCCCCCCCCCCCCCCeeeecccccCCCcccEEEeeec--CCcccccceeE--EEEecCCCCC---
Q 008882 396 VVVQKRHHTRLFPAEHNNRDLTDRSGNILPGTVVDTQICHPTQFDFYLNSHA--GIRGTSRPIHY--HVLYDENRFS--- 468 (550)
Q Consensus 396 Ivv~Krh~~Rff~~~~~~~~~~~~~~N~~pGTvVd~~it~p~~~dFyL~Sh~--~~qGTarPt~Y--~Vl~d~~~~~--- 468 (550)
|+|+||||+|||. + .+|||||| . ||||+||. +.|||++|+|| +|++|+++++
T Consensus 654 IvV~Krh~tRfF~-~------------~~pGTVV~-------~-DFyL~Sh~v~~~qGTprPthY~~~Vi~D~~~~~~~~ 712 (771)
T 1u04_A 654 MDVIKNHPVRAFA-N------------MKMYFNLG-------G-AIYLIPHKLKQAKGTPIPIKLAKKRIIKNGKVEKQS 712 (771)
T ss_dssp EEEESCCCCCBSS-C------------SCEEEEET-------T-EEEEECSCCSSSCSCCCCEEEEEEEEEETTEEEECC
T ss_pred EEEEecCceeeec-C------------CCCeeEEe-------C-CEEEEeccccCCCCCCCCEEEEEEEEecCCCCCCCC
Confidence 9999999999992 1 25899993 3 99999995 55999999999 9999999999
Q ss_pred -HHHHHHHHHHhhhhcCccCC-CccccchhhHHHHHHHHHhhhhcc
Q 008882 469 -ADDLQVLTNNLCYTYARCTR-SVSIVPPAYYAHLAAFRARYYIED 512 (550)
Q Consensus 469 -~d~lq~lt~~Lc~~y~~~~~-~vslPaPl~yA~~~a~R~r~~~~~ 512 (550)
.|+||++||.|||+|+||++ ++|+|+|+||||++|++++.++..
T Consensus 713 ~~D~lq~lty~Lchlyyn~~~~svrvPAP~~YAhklA~lvgq~~~~ 758 (771)
T 1u04_A 713 ITRQDVLDIFILTRLNYGSISADMRLPAPVHYAHKFANAIRNEWKI 758 (771)
T ss_dssp CCHHHHHHHHHHHTCCTTCSSCCCCSCHHHHHHHHHHHHHHTTCCC
T ss_pred CHHHHHHHHHHhhhhcccCCCCCccCCchHHHHHHHHHHHHhhhcc
Confidence 99999999999999999998 999999999999999999998764
No 8
>2w42_A PIWI, putative uncharacterized protein; RNAI, RISC, argonaute, PIWI domain, protein/DNA complex; 1.90A {Archaeoglobus fulgidus} PDB: 1ytu_A 2bgg_A 1w9h_A
Probab=100.00 E-value=2.8e-50 Score=430.85 Aligned_cols=278 Identities=16% Similarity=0.139 Sum_probs=219.8
Q ss_pred CceEEEEEe--------CCCCChhHHHHHHhhhhcCceeeeecccccccCChh-hHHHHHHHHHHhcCCcceeecccccc
Q 008882 188 QLQLLIIIL--------PDVSGSYGRIKRVCETELGIVSQCCQPRQASRLNIP-YFENVALKINVKVGGRNTVLVDAVQK 258 (550)
Q Consensus 188 ~~~lvlvIl--------p~~~~~Y~~IK~~~~~~~GI~TQ~I~~~t~~k~~~~-~~~Ni~lKINaKlGG~n~~l~~~~~~ 258 (550)
++|+||||+ |.+++.|..+|+ ++++.||+||||..+|+.+.+.+ +++||++|||+||||+||.|+..
T Consensus 99 ~~~lvlvilp~~~~~~~~~~~~~~y~~K~-~~~~~gvptQ~I~~~tl~~~~~~~~~~nIalqi~~KlGG~pW~l~~~--- 174 (427)
T 2w42_A 99 QVDNAIDTGVDGIMLVLPEYNTPLYYKLK-SYLINSIPSQFMRYDILSNRNLTFYVDNLLVQFVSKLGGKPWILNVD--- 174 (427)
T ss_dssp HHHHHHHHCCSEEEEEESSCCHHHHHHHH-HHHHTTSCEEEEEGGGCCTTTHHHHHHHHHHHHHHHTTCBCCEECCC---
T ss_pred CCCEEEEEEEccccccCCCCCcchHHHHH-HHhCCCcCcEEEEhhhcccccchhHHHHHHHHHHHHhCCcceecccC---
Confidence 478999999 665555556886 66899999999999999865644 48899999999999999999752
Q ss_pred cCCccCCCCeEEEEEeecCCCCCCCCCCcEEEEEEeecCCCCcceeeEEEeccCchhhhhhhhcccCCCCCCCchhHHHH
Q 008882 259 RIPLVTDRPTIIFGSDVTHPQPGEDSSPSIAAVVASMDWPEVTKYRGLVSAQAHNQEIIQDLYKSTQDPFGGSVHGGMIR 338 (550)
Q Consensus 259 ~lP~~~~~~tmIIGiDVsh~~~~~~~~pSi~avVaS~d~~~~~~y~s~~~~Q~~~~e~i~~l~~~~~~~~~~~~~~~~~~ 338 (550)
|. ..++||||+||+|++.+ +++|++..+| .+...+...+..|...+|++++| .++++
T Consensus 175 --~~--~~~~miiGidv~h~~~~-----~v~g~a~v~~-~~g~~~~~~~~~~~~~~E~~~~l-------------~~~l~ 231 (427)
T 2w42_A 175 --PE--KGSDIIIGTGATRIDNV-----NLFCFAMVFK-KDGTMLWNEISPIVTSSEYLTYL-------------KSTIK 231 (427)
T ss_dssp --TT--SSCSEEEEEEEEESSSS-----EEEEEEEEEC-TTSCEEEEEECCCEEGGGHHHHH-------------HHHHH
T ss_pred --CC--CCCeEEEEEEEEEcCCC-----cEEEEEEEEc-CCCCEEEEEEEecCChhHHHHHH-------------HHHHH
Confidence 11 14699999999998743 5666655555 44443444445555678999988 89999
Q ss_pred HHHHHHHH-hcCCCCc--eEEEEecCCCchhHHHHHHHHHHHHHHHHHhhcC----CCCCCEEEEEEeeccc-CccCcCC
Q 008882 339 ELLIAFRR-STNLKPH--RIIFYRDGVGEGQFSQVLLHEMSAIRQACASLEE----GYAPPVTFVVVQKRHH-TRLFPAE 410 (550)
Q Consensus 339 ~~L~~f~~-~~~~~P~--~IIiyRdGvsegq~~~v~~~Ev~~i~~a~~~~~~----~y~P~it~Ivv~Krh~-~Rff~~~ 410 (550)
++|+.|++ .|+.+|+ +|||| ||+..++++|+++|++||.++.. +|+|+|+||+|+|||| .|||..+
T Consensus 232 ~aL~~y~~~~~~~~P~~~rIii~------gq~~~v~~~Ei~~i~~a~~~~~~~~~~~~~~~l~~IvV~Kr~~~~r~f~~~ 305 (427)
T 2w42_A 232 KVVYGFKKSNPDWDVEKLTLHVS------GKRPKMKDGETKILKETVEELKKQEMVSRDVKYAILHLNETHPFWVMGDPN 305 (427)
T ss_dssp HHHHHHHHHCTTCCCSEEEEEEE------SSCCSCHHHHHHHHHHHHHHHHHTTSSCTTCEEEEEEEEECCCEEEEC---
T ss_pred HHHHHHHHHhcCCCCCceEEEEE------eecccccHHHHHHHHHHHHHhccccccCCCCCEEEEEEEccccceeeecCC
Confidence 99999999 8999888 66887 77788999999999999999865 7899999999999999 8888643
Q ss_pred CCCCCCCCCCCCCCCeeeecccccCCCcccEEEeeecCCcc------c---ccceeEEEEec----CCCC-CHHHHHHHH
Q 008882 411 HNNRDLTDRSGNILPGTVVDTQICHPTQFDFYLNSHAGIRG------T---SRPIHYHVLYD----ENRF-SADDLQVLT 476 (550)
Q Consensus 411 ~~~~~~~~~~~N~~pGTvVd~~it~p~~~dFyL~Sh~~~qG------T---arPt~Y~Vl~d----~~~~-~~d~lq~lt 476 (550)
. ..||+||||||.+ ++|||.+|.+.|+ + +.|+||+|++| ++.+ +.|+||++|
T Consensus 306 ~--------~~nP~~GTvVd~~------~~~~l~~~~g~q~~~~~~~~~~~~~Pt~y~vi~d~~~~~~~~~~~d~lq~lt 371 (427)
T 2w42_A 306 N--------RFHPYEGTKVKLS------SKRYLLTLLQPYLKRNGLEMVTPIKPLSVEIVSDNWTSEEYYHNVHEILDEI 371 (427)
T ss_dssp -------------CCSEEEESS------SSEEEEEEEC---------CEEEEEEEEEEEEEECCCTTTHHHHHHHHHHHH
T ss_pred C--------CCCCCCceEEEcC------CCeEEEEEEeeeccccccccccCCCCEEEEEEecCCcCcccCCCHHHHHHHH
Confidence 2 3599999999973 4556666665555 3 34999999995 4555 589999999
Q ss_pred HHhhhhcCccCCCccccchhhHHHHHHHHHhhhhcc
Q 008882 477 NNLCYTYARCTRSVSIVPPAYYAHLAAFRARYYIED 512 (550)
Q Consensus 477 ~~Lc~~y~~~~~~vslPaPl~yA~~~a~R~r~~~~~ 512 (550)
|.|||+|++++.++++|+|+||||++|+++.....-
T Consensus 372 y~L~~~nw~~t~~v~vPap~~YAhklA~l~~~~~~~ 407 (427)
T 2w42_A 372 YYLSKMNWRGFRSRNLPVTVNYPKLVAGIIANVNRY 407 (427)
T ss_dssp HHHHTCCTTSSSCCSSCHHHHHHHHHHHHHHHHHHT
T ss_pred HHhhCcccCCCCCCCcCcchHhHHHHHHHHhhhhhc
Confidence 999999999999999999999999999999987654
No 9
>4g0x_A Protein argonaute 1; MID domain, small RNA 5' nucleotide recognition, gene regula; 1.35A {Arabidopsis thaliana} PDB: 4g0q_A* 4g0p_A 4g0y_A* 4g0z_A* 3vna_A 3vnb_A
Probab=99.86 E-value=3e-22 Score=184.03 Aligned_cols=117 Identities=53% Similarity=0.847 Sum_probs=103.7
Q ss_pred hHHHHHHHHhhhccccceeeccCCcccccCCChhHHHHHHHHHHHHhhhc---CCCceEEEEEeCCCCCh-hHHHHHHhh
Q 008882 136 RANHFMVQLAERDIHHYDVFNPRPVIPISSSNPNQIEKALVDVHNRTTQQ---GKQLQLLIIILPDVSGS-YGRIKRVCE 211 (550)
Q Consensus 136 ~an~F~~~L~~~~~~~Gm~I~~~p~v~~~~~~~~~ve~~L~~i~~~~~~~---~~~~~lvlvIlp~~~~~-Y~~IK~~~~ 211 (550)
.++.|+..|.+.|+.+||.|.+++.+.....+++++++.|+++++++... +.+++|||||+|+++.+ |..||+++|
T Consensus 27 ~~~~F~~~L~~~~~~~Gm~i~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~lv~~il~~~~~~~Y~~iK~~~~ 106 (147)
T 4g0x_A 27 LARTFCQELAQMCYVSGMAFNPEPVLPPVSARPEQVEKVLKTRYHDATSKLSQGKEIDLLIVILPDNNGSLYGDLKRICE 106 (147)
T ss_dssp HHHHHHHHHHHHHHHTTCEECSSCSSCCEECCGGGHHHHHHHHHHHHHHTSSTTCCCCEEEEEECSSCTTHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHcCCCCCCCCeeeccCCChHHHHHHHHHHHHHHHhhcccCCCCeEEEEEeCCCCccHHHHHHHHHc
Confidence 46889999999999999999988766665557789999999988765421 35799999999998877 999999999
Q ss_pred hhcCceeeeecccccccCChhhHHHHHHHHHHhcCCcceee
Q 008882 212 TELGIVSQCCQPRQASRLNIPYFENVALKINVKVGGRNTVL 252 (550)
Q Consensus 212 ~~~GI~TQ~I~~~t~~k~~~~~~~Ni~lKINaKlGG~n~~l 252 (550)
++.||+||||..+++.|.+++|++||++|||+||||+||.|
T Consensus 107 ~~~gi~tqcv~~~~~~k~~~q~~~nv~lKiN~KlGG~N~~l 147 (147)
T 4g0x_A 107 TELGIVSQCCLTKHVFKMSKQYMANVALKINVKVGGRNTVL 147 (147)
T ss_dssp CCCCCCEEEEEHHHHHHCCHHHHHHHHHHHHHHTTCEECCC
T ss_pred cCCCcccEEechhhhcCCCHHHHHHHHHHHHHhhCcccccC
Confidence 99999999999999988899999999999999999999864
No 10
>4g0o_A Protein argonaute 5; MID domain, small RNA 5' nucleotide recognition, gene regula; 2.19A {Arabidopsis thaliana}
Probab=99.86 E-value=3.1e-22 Score=182.25 Aligned_cols=113 Identities=62% Similarity=0.996 Sum_probs=100.9
Q ss_pred hHHHHHHHHhhhccccceeeccCCcccccCCChhHHHHHHHHHHHHhhhcCCCceEEEEEeCCCCChhHHHHHHhhhhcC
Q 008882 136 RANHFMVQLAERDIHHYDVFNPRPVIPISSSNPNQIEKALVDVHNRTTQQGKQLQLLIIILPDVSGSYGRIKRVCETELG 215 (550)
Q Consensus 136 ~an~F~~~L~~~~~~~Gm~I~~~p~v~~~~~~~~~ve~~L~~i~~~~~~~~~~~~lvlvIlp~~~~~Y~~IK~~~~~~~G 215 (550)
.++.|+..|.+.|+.+||.|.+++.+.....+++++++.|+++++.. .+++|||||+|+++.+|..||+++|++.|
T Consensus 27 ~~~~F~~~L~~~~~~~Gm~i~~p~~~~~~~~~~~~~e~~l~~~~~~~----~~~qlv~~ilp~~~~~Y~~iK~~~~~~~g 102 (139)
T 4g0o_A 27 LPQEFCKQLIGMCVSKGMEFKPQPAIPFISCPPEHIEEALLDIHKRA----PGLQLLIVILPDVTGSYGKIKRICETELG 102 (139)
T ss_dssp HHHHHHHHHHHHHHHHTCEECSSCSSCCEECCGGGHHHHHHHHHHHC----TTCSEEEEECCSSSSCHHHHHCCCCCCCC
T ss_pred HHHHHHHHHHHHHHHcCCccCCCCEEeeecCCchhHHHHHHHHHHhc----CCCcEEEEEECCCCCcHHHHHHHHhccCC
Confidence 57999999999999999999887755544445788999999988764 47999999999987669999999999999
Q ss_pred ceeeeecccccccCChhhHHHHHHHHHHhcCCcceee
Q 008882 216 IVSQCCQPRQASRLNIPYFENVALKINVKVGGRNTVL 252 (550)
Q Consensus 216 I~TQ~I~~~t~~k~~~~~~~Ni~lKINaKlGG~n~~l 252 (550)
|+||||..+++.|.++||++||++|||+||||+|+.|
T Consensus 103 i~tQcv~~~~~~k~~~q~~~nv~lKiN~KlGG~N~~l 139 (139)
T 4g0o_A 103 IVSQCCQPRQVNKLNKQYMENVALKINVKTGGRNTVL 139 (139)
T ss_dssp CCEEEECHHHHHHTCHHHHHHHHHHHHHHTTCEEEEC
T ss_pred cceEEechhhhcCCCHHHHHHHHHHHhhhhCcccCcC
Confidence 9999999999998899999999999999999999864
No 11
>4g0m_A Protein argonaute 2; MID domain, small RNA 5' nucleotide recognition, gene regula; 2.31A {Arabidopsis thaliana}
Probab=99.84 E-value=2.5e-21 Score=178.54 Aligned_cols=117 Identities=32% Similarity=0.424 Sum_probs=93.2
Q ss_pred hHHHHHHHHhhhccccceeeccCCccccc----CCChhHHHHHHHHHHHHhhhc--CCCceEEEEEeCCCCChhHHHHHH
Q 008882 136 RANHFMVQLAERDIHHYDVFNPRPVIPIS----SSNPNQIEKALVDVHNRTTQQ--GKQLQLLIIILPDVSGSYGRIKRV 209 (550)
Q Consensus 136 ~an~F~~~L~~~~~~~Gm~I~~~p~v~~~----~~~~~~ve~~L~~i~~~~~~~--~~~~~lvlvIlp~~~~~Y~~IK~~ 209 (550)
.++.|+..|.+.|+.+||.|.++..+... ..+++++++.|+++++++... +..++|||||+|+++..|..||++
T Consensus 28 ~~~~f~~~l~~~~~~~Gm~i~~P~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~pqlv~~ilp~~~~~Y~~iK~~ 107 (150)
T 4g0m_A 28 MPNDFVDNLIDRCWRLGMQMEAPIVYKTSRMETLSNGNAIEELLRSVIDEASRKHGGARPTLVLCAMSRKDDGYKTLKWI 107 (150)
T ss_dssp CCTTHHHHHHHHHHHTTCEECCCSEEEECCGGGGGCHHHHHHHHHHHHHHHHHHTTTCCCCEEEEEESSCCTHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHcCCccCCCceeeccccccccCchHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCCccHHHHHHH
Confidence 57899999999999999999865433211 235678888998888765532 236899999999987559999999
Q ss_pred hhhhcCceeeeecccccccCChhhHHHHHHHHHHhcCCcceee
Q 008882 210 CETELGIVSQCCQPRQASRLNIPYFENVALKINVKVGGRNTVL 252 (550)
Q Consensus 210 ~~~~~GI~TQ~I~~~t~~k~~~~~~~Ni~lKINaKlGG~n~~l 252 (550)
||++.||+||||..+++.|.+++|++||++|||+||||+||.|
T Consensus 108 ~~~~~gi~tqcv~~~~~~k~~~q~~~nv~lkiN~KlGG~n~~l 150 (150)
T 4g0m_A 108 AETKLGLVTQCFLTGPATKGGDQYRANLALKMNAKVGGSNVEL 150 (150)
T ss_dssp CCCCSCCEEEEEEHHHHSSSCHHHHHHHHHHHHHHC-------
T ss_pred HhhccCcceEEeehhhccCCCHHHHHHHHHHHhhccCCccCcC
Confidence 9999999999999999999899999999999999999999864
No 12
>3luc_A Protein argonaute-2; MID domain, ribonucleoprotein, RNA-binding, RNA-mediated GEN silencing, translation regulation, RNA binding protein; 1.69A {Homo sapiens} PDB: 3lud_A* 3lug_A 3luh_A 3luj_A* 3luk_A 3qx8_A* 3qx9_A*
Probab=99.83 E-value=7.8e-21 Score=172.78 Aligned_cols=110 Identities=31% Similarity=0.458 Sum_probs=94.6
Q ss_pred hhHHHHHHHHhhhccccceeeccCCcccccCCChhHHHHHHHHHHHHhhhcCCCceEEEEEeCCCCCh-hHHHHHHhhhh
Q 008882 135 VRANHFMVQLAERDIHHYDVFNPRPVIPISSSNPNQIEKALVDVHNRTTQQGKQLQLLIIILPDVSGS-YGRIKRVCETE 213 (550)
Q Consensus 135 v~an~F~~~L~~~~~~~Gm~I~~~p~v~~~~~~~~~ve~~L~~i~~~~~~~~~~~~lvlvIlp~~~~~-Y~~IK~~~~~~ 213 (550)
-.++.|+..|.+.|+.+||.|.++|.+......++.+++.|+++.+. ..+++|||||+|++ .+ |..||++||++
T Consensus 28 ~~~~~F~~~L~~~~~~~Gm~i~~~p~~~~~~~~~~~v~~~~~~l~~~----~~~~qlv~~ilp~~-~~~Y~~iK~~~~~~ 102 (138)
T 3luc_A 28 VHLKSFTEQLRKISRDAGMPIQGQPCFCKYAQGADSVEPMFRHLKNT----YAGLQLVVVILPGK-TPVYAEVKRVGDTV 102 (138)
T ss_dssp HHHHHHHHHHHHHHHHHTCCBCSSCSEEEECCSGGGHHHHHHHHHHH----CTTCCEEEEEECSS-CHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCCCeeeecCCcHHHHHHHHHHHHhc----CCCCcEEEEEECCC-ChHHHHHHHHhccC
Confidence 35799999999999999999987665544444567888888887664 24799999999974 45 99999999999
Q ss_pred cCceeeeecccccccCChhhHHHHHHHHHHhcCCcc
Q 008882 214 LGIVSQCCQPRQASRLNIPYFENVALKINVKVGGRN 249 (550)
Q Consensus 214 ~GI~TQ~I~~~t~~k~~~~~~~Ni~lKINaKlGG~n 249 (550)
.||+||||..+++.|.++||++||++|||+||||+|
T Consensus 103 ~gv~tqcv~~~~~~k~~~q~~~nv~lKiN~KlGG~N 138 (138)
T 3luc_A 103 LGMATQCVQMKNVQRTTPQTLSNLCLKINVKLGGVN 138 (138)
T ss_dssp SCCCEEEEEHHHHHSCCHHHHHHHHHHHHHHHSCC-
T ss_pred CCcceEEeCchhccCCCHHHHHHHHHHHhhccCCcC
Confidence 999999999999988899999999999999999987
No 13
>4f3t_A Protein argonaute-2; hydrolase/gene regulation, RNAI, slicer, hydrolase-RNA; 2.25A {Homo sapiens} PDB: 4ei1_A 4ei3_A* 1r4k_A 1si2_A 1si3_A
Probab=94.47 E-value=0.0024 Score=73.56 Aligned_cols=50 Identities=38% Similarity=0.656 Sum_probs=37.0
Q ss_pred cCCCCCCcccccCCCCCCCccCchhhhhHHHHHHHHhhhccccc-eeeccC
Q 008882 109 TLPPSSSQAMRLPVRPGFGTVGRKCVVRANHFMVQLAERDIHHY-DVFNPR 158 (550)
Q Consensus 109 ~~~~~s~~~~~~P~rP~~G~~g~~~~v~an~F~~~L~~~~~~~G-m~I~~~ 158 (550)
+++|+++..+.+|.|||+|+.|+++.+.+|+|...+.+...+|| ++|.++
T Consensus 16 ~~~~~~~~~~~~p~RPg~Gt~G~~i~l~aN~F~v~~~~~~ly~Y~V~i~p~ 66 (861)
T 4f3t_A 16 PPPPIQGYAFKPPPRPDFGTSGRTIKLQANFFEMDIPKIDIYHYELDIKPE 66 (861)
T ss_dssp ---------CCCCBCCCCCCCSEEEEEEESEEEEECCSCEEEEEEEEEESC
T ss_pred CCCccccccccCCCCCCCCCCCcEEEEEeeeEEEECCCCceeeeeEEeCCC
Confidence 33456667899999999999999999999999988877777888 788764
No 14
>4f1n_A Kpago; argonaute, RNAI, RNAse H, RNA binding protein-RNA complex; 3.19A {Vanderwaltozyma polyspora}
Probab=85.51 E-value=0.12 Score=60.41 Aligned_cols=47 Identities=23% Similarity=0.437 Sum_probs=38.5
Q ss_pred CCCCcccccCCCCCCCccCchhhhhHHHHHHHHhhh---------------------ccccc-eeeccC
Q 008882 112 PSSSQAMRLPVRPGFGTVGRKCVVRANHFMVQLAER---------------------DIHHY-DVFNPR 158 (550)
Q Consensus 112 ~~s~~~~~~P~rP~~G~~g~~~~v~an~F~~~L~~~---------------------~~~~G-m~I~~~ 158 (550)
+.+...+.+|.||++||.|.++.+.+|||...+.+. ..++| ++|.++
T Consensus 11 ~~~~~~~~~p~Rp~yGt~G~~v~l~aN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~i~~~~~ 79 (1046)
T 4f1n_A 11 EDTHAIYKVENRHDYGTKGTKVDILTNHILLAVGNDVPTEKIDKELVPKLDGWWKTAFIFTYHIDFKPQ 79 (1046)
T ss_dssp -CCCCCCCCCBCCCCCCCSEEEEEEESEEEEECCTTSCTTTSCTTTSCCCCSTTTSCEEEEEEEEEC--
T ss_pred CCccccccCCCCCCCCCCCcEEEEEeeEEEEecCCCccccccccccccccccccccceEEEEEEEEccc
Confidence 345678899999999999999999999999998776 67777 788764
No 15
>2w36_A Endonuclease V; hypoxanthine, endonuclease, endonucleasev, hydrolase, inosine, DNA damage, DNA repair; HET: BRU; 2.10A {Thermotoga maritima} PDB: 2w35_A 3hd0_A
Probab=72.78 E-value=34 Score=32.72 Aligned_cols=46 Identities=17% Similarity=0.231 Sum_probs=33.9
Q ss_pred cceeEEEEecCCCCCHHHHHHHHHHhhhhcCccCCCccccchhhHHHHHHHHHhh
Q 008882 454 RPIHYHVLYDENRFSADDLQVLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARY 508 (550)
Q Consensus 454 rPt~Y~Vl~d~~~~~~d~lq~lt~~Lc~~y~~~~~~vslPaPl~yA~~~a~R~r~ 508 (550)
+|.-..+ -..++.|+--+++-.+|-. --+||.|+..||++|++.++
T Consensus 177 kPlyVS~---Gh~i~l~~A~~~v~~~~~~------~yRlPEP~R~Ad~~s~~~~~ 222 (225)
T 2w36_A 177 APIFVSP---GHLMDVESSKRLIKAFTLP------GRRIPEPTRLAHIYTQRLKK 222 (225)
T ss_dssp CCEEEEE---CSSCCHHHHHHHHHHHCCT------TCSSCHHHHHHHHHHHHHTT
T ss_pred cCEEEeC---CCCcCHHHHHHHHHHHhcC------CCCCCHHHHHHHHHHHHhhh
Confidence 6653222 3468899999999887621 25799999999999988665
No 16
>2nrr_A Uvrabc system protein C; UVRC, endonuclase, NER, hydrolase; 1.20A {Thermotoga maritima}
Probab=70.65 E-value=39 Score=30.47 Aligned_cols=101 Identities=24% Similarity=0.295 Sum_probs=54.0
Q ss_pred CeEEEEEeecCCCCCCCCCCcEEEEEEeecCCCCc--ceeeEEEeccCchhhhhhhhcccCCCCCCCchhHHHHHHHHHH
Q 008882 267 PTIIFGSDVTHPQPGEDSSPSIAAVVASMDWPEVT--KYRGLVSAQAHNQEIIQDLYKSTQDPFGGSVHGGMIRELLIAF 344 (550)
Q Consensus 267 ~tmIIGiDVsh~~~~~~~~pSi~avVaS~d~~~~~--~y~s~~~~Q~~~~e~i~~l~~~~~~~~~~~~~~~~~~~~L~~f 344 (550)
+.-|-++|+||-. +.-.++++|.-.| .... .|- .+.+.. +-.+|+ .+|.|.|..-
T Consensus 17 P~RIE~fDiSh~~----G~~~VasmVVf~~-g~p~K~~YR-rf~I~~---~g~DDy--------------a~M~Evl~RR 73 (159)
T 2nrr_A 17 PYRIEGIDISHLQ----GKYTVASLVVFED-GFPKKGDYR-RYKIEQ---DHPDDY--------------ESIRTVVKRR 73 (159)
T ss_dssp CCEEEEEEEECC-------CCEEEEEEEET-TEECGGGCE-EEEC--------CHH--------------HHHHHHHHHH
T ss_pred CCEEEEEECCccC----CccceEEEEEEeC-CccChhhCc-eeecCC---CCCCHH--------------HHHHHHHHHH
Confidence 5678999999975 3457778777666 3222 221 122211 222443 4455555444
Q ss_pred HHhcCCCCceEEEEecCCCchhHHHHHHHHHHHHHHHHHhhcCCCCCCEEEEEEeecccCccC
Q 008882 345 RRSTNLKPHRIIFYRDGVGEGQFSQVLLHEMSAIRQACASLEEGYAPPVTFVVVQKRHHTRLF 407 (550)
Q Consensus 345 ~~~~~~~P~~IIiyRdGvsegq~~~v~~~Ev~~i~~a~~~~~~~y~P~it~Ivv~Krh~~Rff 407 (550)
.+.. .+|+-|+| || +.||+ .+.++++.+++. .+.+|-+.|. ..++|
T Consensus 74 ~~r~-~~PDLilI--DG-GkgQl--------~aA~~vl~elg~----~i~v~glAK~-~e~l~ 119 (159)
T 2nrr_A 74 YSKH-PLPNLLFV--DG-GIGQV--------NAAIEALKEIGK----DCPVVGLAKK-EETVV 119 (159)
T ss_dssp HTTS-CCCSEEEE--SS-CHHHH--------HHHHHHHHHTTC----CCCEEEEC-----CEE
T ss_pred hccC-CCCCEEEE--eC-CHHHH--------HHHHHHHHHcCC----CccEEEEEcC-CcEEE
Confidence 3322 68998777 77 45664 455777877743 3567888886 33444
No 17
>3c65_A Uvrabc system protein C; UVRC, endonuclease, nucleotide excision repair, DNA repair, RNAse H, cytoplasm, DNA damage, DNA excision; 1.90A {Bacillus stearothermophilus}
Probab=67.51 E-value=28 Score=33.25 Aligned_cols=102 Identities=23% Similarity=0.287 Sum_probs=56.2
Q ss_pred CeEEEEEeecCCCCCCCCCCcEEEEEEeecCCCCc--ceeeEEEeccCchhhhhhhhcccCCCCCCCchhHHHHHHHHHH
Q 008882 267 PTIIFGSDVTHPQPGEDSSPSIAAVVASMDWPEVT--KYRGLVSAQAHNQEIIQDLYKSTQDPFGGSVHGGMIRELLIAF 344 (550)
Q Consensus 267 ~tmIIGiDVsh~~~~~~~~pSi~avVaS~d~~~~~--~y~s~~~~Q~~~~e~i~~l~~~~~~~~~~~~~~~~~~~~L~~f 344 (550)
|.-|=++|+||-. +.-.++++|.-.| .... .|- .+.+.. .+-.+|+ ..|.+++.++....
T Consensus 14 p~rIE~fDiSh~~----G~~~V~smVvf~~-g~p~k~~YR-~f~i~~--~~g~DDy----------a~m~Evl~RR~~r~ 75 (226)
T 3c65_A 14 PRRIEAFDNSNIY----GADPVSALVVFLD-GKPAKKEYR-KYKVKT--VAGPNDY----------ETMREVVRRRYTRV 75 (226)
T ss_dssp CSEEEEEEEEESS----SSSCEEEEEEEET-TEECGGGCE-EEECCC--CCTTCHH----------HHHHHHHHHHHHHH
T ss_pred CCEEEEEECCccC----CcCceEEEEEEeC-CccChhhCc-eeecCC--CCCCcHH----------HHHHHHHHHHHhhh
Confidence 6788999999975 3457788887666 3222 221 122211 1111333 22455555554444
Q ss_pred HHhcCCCCceEEEEecCCCchhHHHHHHHHHHHHHHHH-HhhcCCCCCCEEEEEEeec
Q 008882 345 RRSTNLKPHRIIFYRDGVGEGQFSQVLLHEMSAIRQAC-ASLEEGYAPPVTFVVVQKR 401 (550)
Q Consensus 345 ~~~~~~~P~~IIiyRdGvsegq~~~v~~~Ev~~i~~a~-~~~~~~y~P~it~Ivv~Kr 401 (550)
.+....+|+-||| || +.||+ .+.++++ .++.. .+.+|-+.|.
T Consensus 76 ~~e~~~~PDLili--DG-GkgQl--------~~a~~vl~~~lg~----~i~v~glaK~ 118 (226)
T 3c65_A 76 LKEGLPLPDLIII--DG-GKGHL--------SAVRDVLENELGL----DVPLAGLAKD 118 (226)
T ss_dssp HHHTCCCCSEEEE--SS-CHHHH--------HHHHHHHHHTSCC----CCCEEEC---
T ss_pred hcccCCCCCEEEE--eC-CHHHH--------HHHHHHHHHhcCC----CceEEEEEcC
Confidence 4434469998887 77 45664 4557788 47643 3557778884
No 18
>3goc_A Endonuclease V; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: YES; 1.60A {Streptomyces avermitilis}
Probab=63.13 E-value=53 Score=31.57 Aligned_cols=45 Identities=22% Similarity=0.132 Sum_probs=33.5
Q ss_pred ccceeEEEEecCCCCCHHHHHHHHHHhhhhcCccCCCccccchhhHHHHHHHHHh
Q 008882 453 SRPIHYHVLYDENRFSADDLQVLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRAR 507 (550)
Q Consensus 453 arPt~Y~Vl~d~~~~~~d~lq~lt~~Lc~~y~~~~~~vslPaPl~yA~~~a~R~r 507 (550)
.+|.-..+ -..++.|+--.++-.+|- --+||.|+..||++|+++.
T Consensus 180 ~kPlyVS~---Ghrisl~~A~~~v~~~~~-------~yRlPEP~R~AD~lsr~~l 224 (237)
T 3goc_A 180 VKPVFVSV---GHRVDLDHACAHTLALTP-------KYRIPETTRRADSLCRRAL 224 (237)
T ss_dssp SCCEEEEE---EESCCHHHHHHHHHHTCS-------SCSSCHHHHHHHHHHHHHH
T ss_pred ccCEEEec---CCCcCHHHHHHHHHHHcc-------CCCCCHHHHHHHHHHHHHH
Confidence 57765444 235789999999988763 3579999999999996653
No 19
>2c2x_A Methylenetetrahydrofolate dehydrogenase- methenyltetrahydrofolate cyclohydrolase; NADP; 2.0A {Mycobacterium tuberculosis} PDB: 2c2y_A
Probab=58.82 E-value=30 Score=34.16 Aligned_cols=73 Identities=21% Similarity=0.180 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHhhhcCCCceEEEEEeCCCCCh--hHHHHHHhhhhcCceeeeecccccccCChhhHHHHHHHHHHh
Q 008882 170 QIEKALVDVHNRTTQQGKQLQLLIIILPDVSGS--YGRIKRVCETELGIVSQCCQPRQASRLNIPYFENVALKINVK 244 (550)
Q Consensus 170 ~ve~~L~~i~~~~~~~~~~~~lvlvIlp~~~~~--Y~~IK~~~~~~~GI~TQ~I~~~t~~k~~~~~~~Ni~lKINaK 244 (550)
.+.+.|.+.....+..+..|.|+++..-+...+ |-..|...+.+.||.+..+.... .....-+.+.+.++|.-
T Consensus 14 ~i~~~~~~~v~~l~~~g~~P~Lavilvg~dpas~~Yv~~k~k~~~~~Gi~~~~~~lp~--~~s~~ell~~i~~lN~D 88 (281)
T 2c2x_A 14 EIFGDLKQRVAALDAAGRTPGLGTILVGDDPGSQAYVRGKHADCAKVGITSIRRDLPA--DISTATLNETIDELNAN 88 (281)
T ss_dssp HHHHHHHHHHHHHHHTTCCCEEEEEEESCCHHHHHHHHHHHHHHHHHTCEEEEEEECT--TCCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhcCCCceEEEEEeCCChhhHHHHHHHHHHHHHcCCEEEEEECCC--CCCHHHHHHHHHHhcCC
Confidence 344444443333332234588888888776555 99999888889999999887642 22345567788888864
No 20
>4b4u_A Bifunctional protein fold; oxidoreductase; HET: NAP; 1.45A {Acinetobacter baumannii atcc 19606} PDB: 4b4v_A* 4b4w_A*
Probab=58.04 E-value=28 Score=34.78 Aligned_cols=57 Identities=23% Similarity=0.209 Sum_probs=43.4
Q ss_pred CCCceEEEEEeCCCCCh--hHHHHHHhhhhcCceeeeecccccccCChhhHHHHHHHHHHh
Q 008882 186 GKQLQLLIIILPDVSGS--YGRIKRVCETELGIVSQCCQPRQASRLNIPYFENVALKINVK 244 (550)
Q Consensus 186 ~~~~~lvlvIlp~~~~~--Y~~IK~~~~~~~GI~TQ~I~~~t~~k~~~~~~~Ni~lKINaK 244 (550)
+..|.|++++.-+...+ |-..|...+.+.||.+..+.... .....-+.+.+.++|.-
T Consensus 51 g~~P~LavIlVG~dpaS~~Yv~~K~k~c~~vGi~s~~~~lp~--~~se~ell~~I~~LN~D 109 (303)
T 4b4u_A 51 GRTPILATILVGDDGASATYVRMKGNACRRVGMDSLKIELPQ--ETTTEQLLAEIEKLNAN 109 (303)
T ss_dssp SCCCEEEEEEESCCHHHHHHHHHHHHHHHHTTCEEEEEEECT--TCCHHHHHHHHHHHHTC
T ss_pred CCCCcEEEEEeCCCHHHHHHHHHHHHHHHHcCCeEEEEecCc--cCCHHHHHHHHHHhcCC
Confidence 46788988888876555 99999888999999999887653 22345567788888864
No 21
>3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp}
Probab=55.74 E-value=37 Score=33.62 Aligned_cols=80 Identities=20% Similarity=0.201 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHhhhcCCCceEEEEEeCCCCCh--hHHHHHHhhhhcCceeeeecccccccCChhhHHHHHHHHHH--hc
Q 008882 170 QIEKALVDVHNRTTQQGKQLQLLIIILPDVSGS--YGRIKRVCETELGIVSQCCQPRQASRLNIPYFENVALKINV--KV 245 (550)
Q Consensus 170 ~ve~~L~~i~~~~~~~~~~~~lvlvIlp~~~~~--Y~~IK~~~~~~~GI~TQ~I~~~t~~k~~~~~~~Ni~lKINa--Kl 245 (550)
.+.+.|.+.....+..+..|.|+++..-+...+ |-..|...+.+.||.+..+.... .....-+.+.+.++|. +.
T Consensus 15 ~i~~~~~~~v~~l~~~~~~P~Lavilvg~dpaS~~Yv~~k~k~~~~~Gi~~~~~~lp~--~~s~~ell~~I~~lN~d~~v 92 (285)
T 3p2o_A 15 KIKEELKEKNQFLKSKGIESCLAVILVGDNPASQTYVKSKAKACEECGIKSLVYHLNE--NITQNELLALINTLNHDDSV 92 (285)
T ss_dssp HHHHHHHHHHHHHHTTTCCCEEEEEEESCCHHHHHHHHHHHHHHHHHTCEEEEEEECT--TCCHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHHhcCCCCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCeEEEEECCC--CCCHHHHHHHHHHHhCCCCC
Confidence 344444444333333334788888888776555 99999888899999998887652 1234457788889986 46
Q ss_pred CCccee
Q 008882 246 GGRNTV 251 (550)
Q Consensus 246 GG~n~~ 251 (550)
.|++..
T Consensus 93 ~GIlvq 98 (285)
T 3p2o_A 93 HGILVQ 98 (285)
T ss_dssp CEEEEC
T ss_pred CEEEec
Confidence 676643
No 22
>2nrt_A Uvrabc system protein C; UVRC, endonuclease, RNAse H, helix hairpin helix, NER, hydrolase; 1.50A {Thermotoga maritima} PDB: 2nrv_A 2nrw_A 2nrx_A 2nrz_A
Probab=51.95 E-value=80 Score=29.97 Aligned_cols=96 Identities=25% Similarity=0.303 Sum_probs=55.8
Q ss_pred CeEEEEEeecCCCCCCCCCCcEEEEEEeecCCCCc--ceeeEEEeccCchhhhhhhhcccCCCCCCCchhHHHHHHHHHH
Q 008882 267 PTIIFGSDVTHPQPGEDSSPSIAAVVASMDWPEVT--KYRGLVSAQAHNQEIIQDLYKSTQDPFGGSVHGGMIRELLIAF 344 (550)
Q Consensus 267 ~tmIIGiDVsh~~~~~~~~pSi~avVaS~d~~~~~--~y~s~~~~Q~~~~e~i~~l~~~~~~~~~~~~~~~~~~~~L~~f 344 (550)
|.-|-++|+||-. +.-.++++|.-.| .... .|- .+.+.. +-.+|+ ..|.|.|..-
T Consensus 22 p~rIE~fDiSh~~----G~~~V~smVvf~~-g~p~k~~YR-rf~i~~---~g~DDy--------------a~m~Evl~RR 78 (220)
T 2nrt_A 22 PYRIEGIDISHLQ----GKYTVASLVVFED-GFPKKGDYR-RYKIEQ---DHPDDY--------------ESIRTVVKRR 78 (220)
T ss_dssp CCEEEEEEEEEET----TTEEEEEEEEEET-TEECGGGCE-EEEEEC---SSCCHH--------------HHHHHHHHHH
T ss_pred CCEEEEEECCccC----CccceEEEEEEeC-CccChhhCc-eeeCCC---CCCCHH--------------HHHHHHHHHH
Confidence 5678999999975 3457777777666 3222 222 122221 112443 4455555444
Q ss_pred HHhcCCCCceEEEEecCCCchhHHHHHHHHHHHHHHHHHhhcCCCCCCEEEEEEeec
Q 008882 345 RRSTNLKPHRIIFYRDGVGEGQFSQVLLHEMSAIRQACASLEEGYAPPVTFVVVQKR 401 (550)
Q Consensus 345 ~~~~~~~P~~IIiyRdGvsegq~~~v~~~Ev~~i~~a~~~~~~~y~P~it~Ivv~Kr 401 (550)
+... .+|+-||| || +.||+ .+.++++.+++. .+.+|-+.|+
T Consensus 79 ~~r~-~~PDLili--DG-GkgQl--------~~a~~vl~~lg~----~i~v~glaK~ 119 (220)
T 2nrt_A 79 YSKH-PLPNLLFV--DG-GIGQV--------NAAIEALKEIGK----DCPVVGLAKK 119 (220)
T ss_dssp HTTS-CCCSEEEE--SS-SHHHH--------HHHHHHHHHTTC----CCCEEEECTT
T ss_pred hccC-CCCCEEEE--eC-CHHHH--------HHHHHHHHHcCC----CCeEEEEECC
Confidence 3322 68998777 77 45664 455777777743 3567888886
No 23
>3qbz_A DDK kinase regulatory subunit DBF4; FHA domain,RAD53, replication checkpoint, cell cycle; 2.69A {Saccharomyces cerevisiae}
Probab=51.53 E-value=6.7 Score=35.43 Aligned_cols=62 Identities=13% Similarity=0.221 Sum_probs=41.3
Q ss_pred HHHHHHHHhc-CCCCceEEEEecCCCchhHHHHHHHHHH----HHHHHHHhhcC----CCCCCEEEEEEee
Q 008882 339 ELLIAFRRST-NLKPHRIIFYRDGVGEGQFSQVLLHEMS----AIRQACASLEE----GYAPPVTFVVVQK 400 (550)
Q Consensus 339 ~~L~~f~~~~-~~~P~~IIiyRdGvsegq~~~v~~~Ev~----~i~~a~~~~~~----~y~P~it~Ivv~K 400 (550)
+.|..|+++- +.+|...+||-|.+++.+....+..|++ .++++|..++. =|.-.+|+||.++
T Consensus 46 ~eL~~WQ~~WRkifk~~~vfYFDt~~~~~~~~~~k~kl~K~~~llkr~f~~LGA~I~~FFd~~VTiVIT~R 116 (160)
T 3qbz_A 46 KELLEWQTNWKKIMKRDSRIYFDITDDVEMNTYNKSKMDKRRDLLKRGFLTLGAQITQFFDTTVTIVITRR 116 (160)
T ss_dssp HHHHHHHHHHHHHHHHHCEEEECCCCSSCCCHHHHHHHHHHHHHHHHHHHTTTCEEESSCCTTCCEEEESS
T ss_pred HHHHHHHHHHHHhCccCcEEEecCCChhhhhHHHHHHHHHHHHHHHHHHHHcCCEeeeeccCCeEEEEecC
Confidence 5567777654 4688788999999998755444444544 45677777753 3566788776544
No 24
>1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A*
Probab=50.70 E-value=43 Score=33.44 Aligned_cols=56 Identities=16% Similarity=0.133 Sum_probs=42.5
Q ss_pred CCceEEEEEeCCCCCh--hHHHHHHhhhhcCceeeeecccccccCChhhHHHHHHHHHHh
Q 008882 187 KQLQLLIIILPDVSGS--YGRIKRVCETELGIVSQCCQPRQASRLNIPYFENVALKINVK 244 (550)
Q Consensus 187 ~~~~lvlvIlp~~~~~--Y~~IK~~~~~~~GI~TQ~I~~~t~~k~~~~~~~Ni~lKINaK 244 (550)
..|.|+++..-+...+ |-+.|...+.+.||.+..+.... .....-+.+.+.++|.-
T Consensus 34 ~~P~LavilvG~dpaS~~Yv~~k~k~~~~~Gi~~~~~~lp~--~~s~~ell~~I~~lN~D 91 (301)
T 1a4i_A 34 FTPRLAILQVGNRDDSNLYINVKLKAAEEIGIKATHIKLPR--TTTESEVMKYITSLNED 91 (301)
T ss_dssp CCCEEEEEEESCCHHHHHHHHHHHHHHHHHTCEEEEEEECT--TCCHHHHHHHHHHHHHC
T ss_pred CCCEEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCC--CCCHHHHHHHHHHhcCC
Confidence 4588988888877655 99999888889999999887542 22344567788899864
No 25
>1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2
Probab=46.68 E-value=49 Score=32.77 Aligned_cols=73 Identities=16% Similarity=0.216 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHhhhcC-CCceEEEEEeCCCCCh--hHHHHHHhhhhcCceeeeecccccccCChhhHHHHHHHHHHh
Q 008882 170 QIEKALVDVHNRTTQQG-KQLQLLIIILPDVSGS--YGRIKRVCETELGIVSQCCQPRQASRLNIPYFENVALKINVK 244 (550)
Q Consensus 170 ~ve~~L~~i~~~~~~~~-~~~~lvlvIlp~~~~~--Y~~IK~~~~~~~GI~TQ~I~~~t~~k~~~~~~~Ni~lKINaK 244 (550)
.+.+.|.+.....+..+ ..|.|+++..-+...+ |-..|...+.+.||.+..+.... .....-+.+.+.++|.-
T Consensus 14 ~i~~~~~~~v~~l~~~~~~~P~LavilvG~dpaS~~Yv~~k~k~~~~~Gi~~~~~~lp~--~~s~~ell~~I~~lN~D 89 (288)
T 1b0a_A 14 QVRSEVAQKVQARIAAGLRAPGLAVVLVGSNPASQIYVASKRKACEEVGFVSRSYDLPE--TTSEAELLELIDTLNAD 89 (288)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCEEEEEEESCCHHHHHHHHHHHHHHHHHTCEECCEEECT--TCCHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHhcCCCCceEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCC--CCCHHHHHHHHHHhcCC
Confidence 34444444333333222 4588888888776555 99999888889999998887542 12344566788888854
No 26
>4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major}
Probab=45.22 E-value=58 Score=32.42 Aligned_cols=63 Identities=21% Similarity=0.195 Sum_probs=46.4
Q ss_pred CCceEEEEEeCCCCCh--hHHHHHHhhhhcCceeeeecccccccCChhhHHHHHHHHHHh--cCCccee
Q 008882 187 KQLQLLIIILPDVSGS--YGRIKRVCETELGIVSQCCQPRQASRLNIPYFENVALKINVK--VGGRNTV 251 (550)
Q Consensus 187 ~~~~lvlvIlp~~~~~--Y~~IK~~~~~~~GI~TQ~I~~~t~~k~~~~~~~Ni~lKINaK--lGG~n~~ 251 (550)
..|.|+++..-+...+ |-..|...+.+.||.+..+.... .....-+.+.+.++|.- .-|++..
T Consensus 36 ~~P~Lavilvg~dpaS~~Yv~~k~k~~~~~Gi~~~~~~lp~--~~s~~ell~~I~~lN~d~~v~GIlVq 102 (300)
T 4a26_A 36 RVPGLASIIVGQRMDSKKYVQLKHKAAAEVGMASFNVELPE--DISQEVLEVNVEKLNNDPNCHGIIVQ 102 (300)
T ss_dssp CCCEEEEEEESCCHHHHHHHHHHHHHHHHTTCEEEEEEECT--TCCHHHHHHHHHHHHTCTTCCEEEEC
T ss_pred CCceEEEEEeCCCHHHHHHHHHHHHHHHHcCCeEEEEECCC--CCCHHHHHHHHHHhcCCCCCCEEEEc
Confidence 5788888888876554 99999888999999998887642 12344577888899864 5666543
No 27
>4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1}
Probab=44.69 E-value=69 Score=31.67 Aligned_cols=79 Identities=18% Similarity=0.163 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHhhhc-CCCceEEEEEeCCCCCh--hHHHHHHhhhhcCceeeeecccccccCChhhHHHHHHHHHHh--
Q 008882 170 QIEKALVDVHNRTTQQ-GKQLQLLIIILPDVSGS--YGRIKRVCETELGIVSQCCQPRQASRLNIPYFENVALKINVK-- 244 (550)
Q Consensus 170 ~ve~~L~~i~~~~~~~-~~~~~lvlvIlp~~~~~--Y~~IK~~~~~~~GI~TQ~I~~~t~~k~~~~~~~Ni~lKINaK-- 244 (550)
.+.+.|.+.....+.+ +..|.|+++..-+...+ |-..|...+.+.||.+..+.... .....-+.+.+.++|.-
T Consensus 16 ~i~~~~~~~v~~l~~~~~~~P~Lavilvg~dpaS~~Yv~~k~k~~~~~Gi~~~~~~lp~--~~s~~ell~~I~~lN~d~~ 93 (286)
T 4a5o_A 16 NLRQQIAQRVTERRQQGLRVPGLAVILVGTDPASQVYVAHKRKDCEEVGFLSQAYDLPA--ETSQDDLLALIDRLNDDPA 93 (286)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCEEEEEEESCCHHHHHHHHHHHHHHHHTTCEEEEEEECT--TCCHHHHHHHHHHHHTCTT
T ss_pred HHHHHHHHHHHHHHhcCCCCceEEEEEeCCCHHHHHHHHHHHHHHHHcCCeEEEEECCC--CCCHHHHHHHHHHHhCCCC
Confidence 3344444433333322 34688988888876555 99999888899999998887642 12344567888889864
Q ss_pred cCCcce
Q 008882 245 VGGRNT 250 (550)
Q Consensus 245 lGG~n~ 250 (550)
.-|++.
T Consensus 94 v~GIlV 99 (286)
T 4a5o_A 94 IDGILV 99 (286)
T ss_dssp CCEEEE
T ss_pred CCEEEE
Confidence 556654
No 28
>3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A
Probab=40.28 E-value=77 Score=31.13 Aligned_cols=56 Identities=16% Similarity=0.191 Sum_probs=40.8
Q ss_pred CCCceEEEEEeCCCCCh--hHHHHHHhhhhcCceeeeecccccccCChhhHHHHHHHHHHh
Q 008882 186 GKQLQLLIIILPDVSGS--YGRIKRVCETELGIVSQCCQPRQASRLNIPYFENVALKINVK 244 (550)
Q Consensus 186 ~~~~~lvlvIlp~~~~~--Y~~IK~~~~~~~GI~TQ~I~~~t~~k~~~~~~~Ni~lKINaK 244 (550)
+..|.|+++..-+...+ |-..|...+.+.|| +..+.... .....-+.+.+.++|.-
T Consensus 25 ~~~P~Lavilvg~dpaS~~Yv~~k~k~~~~~Gi-~~~~~lp~--~~s~~ell~~I~~lN~D 82 (276)
T 3ngx_A 25 GLEPSLKLIQIGDNEAASIYARAKIRRGKKIGI-AVDLEKYD--DISMKDLLKRIDDLAKD 82 (276)
T ss_dssp TCCCEEEEEEESCCHHHHHHHHHHHHHHHHHTC-EEEEEEES--SCCHHHHHHHHHHHHHC
T ss_pred CCCCcEEEEEeCCCHHHHHHHHHHHHHHHHCCe-EEEEECCC--CCCHHHHHHHHHHHcCC
Confidence 46788888888776554 99999888899999 77776542 12344566788888864
No 29
>3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis}
Probab=39.13 E-value=63 Score=31.92 Aligned_cols=63 Identities=19% Similarity=0.120 Sum_probs=46.4
Q ss_pred CCceEEEEEeCCCCCh--hHHHHHHhhhhcCceeeeecccccccCChhhHHHHHHHHHHh--cCCccee
Q 008882 187 KQLQLLIIILPDVSGS--YGRIKRVCETELGIVSQCCQPRQASRLNIPYFENVALKINVK--VGGRNTV 251 (550)
Q Consensus 187 ~~~~lvlvIlp~~~~~--Y~~IK~~~~~~~GI~TQ~I~~~t~~k~~~~~~~Ni~lKINaK--lGG~n~~ 251 (550)
..|.|+++..-+...+ |-..|...+.+.||.+..+.... .....-+.+.+.++|.- .-|++..
T Consensus 33 ~~P~Lavilvg~dpaS~~Yv~~k~k~~~~~Gi~~~~~~lp~--~~s~~ell~~I~~lN~d~~v~GIlvq 99 (285)
T 3l07_A 33 ITPKLVAIIVGNDPASKTYVASKEKACAQVGIDSQVITLPE--HTTESELLELIDQLNNDSSVHAILVQ 99 (285)
T ss_dssp CCCEEEEEEESCCHHHHHHHHHHHHHHHHHTCEEEEEEECT--TCCHHHHHHHHHHHHTCTTCCEEEEC
T ss_pred CCceEEEEEECCCHHHHHHHHHHHHHHHHcCCeEEEEECCC--CCCHHHHHHHHHHHhCCCCCcEEEEc
Confidence 5788888888876555 99999888899999998887642 12344577888899864 5566543
No 30
>1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A*
Probab=34.23 E-value=95 Score=31.15 Aligned_cols=53 Identities=9% Similarity=0.130 Sum_probs=40.4
Q ss_pred CCceEEEEEeCCCCCh--hHHHHHHhhhhcCceeeeecccccccCChhhHHHHHHHHHHh
Q 008882 187 KQLQLLIIILPDVSGS--YGRIKRVCETELGIVSQCCQPRQASRLNIPYFENVALKINVK 244 (550)
Q Consensus 187 ~~~~lvlvIlp~~~~~--Y~~IK~~~~~~~GI~TQ~I~~~t~~k~~~~~~~Ni~lKINaK 244 (550)
..|.|+++..-+...+ |...|...+.+.||.+..+.... ..-+.+++.++|.-
T Consensus 35 ~~P~Lavilvg~dpas~~Yv~~k~k~~~~~Gi~~~~~~l~~-----~~~l~~~i~~lN~d 89 (320)
T 1edz_A 35 QGPLLVGFLANNDPAAKMYATWTQKTSESMGFRYDLRVIED-----KDFLEEAIIQANGD 89 (320)
T ss_dssp CCCEEEEEECCCCHHHHHHHHHHHHHHHHHTCEEEEEECSS-----GGGHHHHHHHHHHC
T ss_pred CCCeEEEEEECCchhHHHHHHHHHHHHHHcCCEEEEEECCC-----hHHHHHHHHHHcCC
Confidence 3488887777776555 99999888899999998887652 24466788899854
No 31
>3ga2_A Endonuclease V; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Bacillus subtilis}
Probab=30.26 E-value=87 Score=30.24 Aligned_cols=51 Identities=18% Similarity=0.194 Sum_probs=39.7
Q ss_pred ccceeEEEEecCCCCCHHHHHHHHHHhhhhcCccCCCccccchhhHHHHHHHHHhhhhcc
Q 008882 453 SRPIHYHVLYDENRFSADDLQVLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARYYIED 512 (550)
Q Consensus 453 arPt~Y~Vl~d~~~~~~d~lq~lt~~Lc~~y~~~~~~vslPaPl~yA~~~a~R~r~~~~~ 512 (550)
.+|.-..+=| .++.|+--.++-.+|- +.-+||.|+..||++|++.|..+..
T Consensus 185 ~kPlyVS~Gh---~i~l~~A~~~v~~~~~------~~yRlPEP~R~AD~~a~~~r~~l~~ 235 (246)
T 3ga2_A 185 VKPIFLSCGN---YIDLDSSYQITMSLIN------QESRLPIPVRLADLETHVLRTFYQK 235 (246)
T ss_dssp SCCEEEEEEE---SSCHHHHHHHHHHTCC------TTCSSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEeccC---CCCHHHHHHHHHHHcc------CCCCCChHHHHHHHHHHHHHHHHHH
Confidence 5787666543 5789999999988762 2357999999999999999987654
No 32
>3iz6_E 40S ribosomal protein S2 (S5P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 2zkq_e
Probab=26.38 E-value=5.7 Score=39.06 Aligned_cols=19 Identities=26% Similarity=0.324 Sum_probs=13.1
Q ss_pred HHHHHHHHhcCCcceeecc
Q 008882 236 NVALKINVKVGGRNTVLVD 254 (550)
Q Consensus 236 Ni~lKINaKlGG~n~~l~~ 254 (550)
-|-.++..|+|.....|.+
T Consensus 162 TIph~V~Gk~Gs~~V~L~P 180 (274)
T 3iz6_E 162 TVPCKVTGKCGSVTVRMVP 180 (274)
T ss_dssp HHHHHHHHHHHHHSSCBCC
T ss_pred ccceEEEEEEcCEEEEEee
Confidence 3556888888887665543
No 33
>2qh9_A UPF0215 protein AF_1433; structural genomics, PSI-2, MCSG, PR structure initiative; 1.80A {Archaeoglobus fulgidus}
Probab=24.90 E-value=44 Score=30.81 Aligned_cols=36 Identities=14% Similarity=0.139 Sum_probs=28.7
Q ss_pred CCCCHHHHHHHHHHhhhhcCccCCCccccchhhHHHHHHHHHh
Q 008882 465 NRFSADDLQVLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRAR 507 (550)
Q Consensus 465 ~~~~~d~lq~lt~~Lc~~y~~~~~~vslPaPl~yA~~~a~R~r 507 (550)
.+++.|+-.+++..+|-- -++|.|+.+||++|...+
T Consensus 141 ~Gi~l~~A~~iv~~~~~~-------~riPEPlR~Ahlia~~~~ 176 (184)
T 2qh9_A 141 AGLTPSEAEKLVKASLIK-------GNMPEPVRISHLVASAII 176 (184)
T ss_dssp ESSCHHHHHHHHHHHCSS-------SSSCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhccc-------CCCchhHHHHHHHHHhhh
Confidence 358999999999876532 379999999999997654
Done!