BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008884
(550 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8W486|Y1491_ARATH Uncharacterized protein At1g04910 OS=Arabidopsis thaliana
GN=At1g04910 PE=1 SV=1
Length = 519
Score = 275 bits (702), Expect = 8e-73, Method: Compositional matrix adjust.
Identities = 160/434 (36%), Positives = 242/434 (55%), Gaps = 24/434 (5%)
Query: 120 LWENPYSATTSWKPCAERRLGGISELPPENETNGYIFIHAEGGLNQQRIAICNAVAVAKI 179
LWE+ S W+P + R PP ETNGY+ + GGLNQQR AICNAV A+I
Sbjct: 62 LWESAKSG--GWRPSSAPRSDWP---PPTKETNGYLRVRCNGGLNQQRSAICNAVLAARI 116
Query: 180 MNATLILPVLKQDQIWKDQTKFEDIFDVDHFIDYLKDDVRIVRDIPDWFTDKSELFSSIR 239
MNATL+LP L + W D + F+ I+DV+HFI+ LK DV+IV IPD K+ I+
Sbjct: 117 MNATLVLPELDANSFWHDDSGFQGIYDVEHFIETLKYDVKIVGKIPD--VHKNGKTKKIK 174
Query: 240 RTVKNIPKYAPAQFYIDNVLPRIKEKKIMALKPFVDRLGYDNVPPEINRLRCRVNYHALK 299
P+ AP ++Y+ L ++E + L PF RL + PE RLRCRVNYHAL+
Sbjct: 175 AFQIRPPRDAPIEWYLTTALKAMREHSAIYLTPFSHRLAEEIDNPEYQRLRCRVNYHALR 234
Query: 300 FLPEIEQMSDLLASRMKNRTGSSNPYMALHLRFEKGMVGLSFCDFVGTREEKAKMAEYRK 359
F P I ++S+ + +++ S +M++HLRFE M+ + C + EE+ + +YRK
Sbjct: 235 FKPHIMKLSESIVDKLR----SQGHFMSIHLRFEMDMLAFAGCFDIFNPEEQKILRKYRK 290
Query: 360 KEWPRRYKNGSHLWQLALQKRKEGRCPLEPGEVAVILRAMGYPKETQIYVASGQVYGGQN 419
+ + + + ++R G+CPL P EV +ILRAM + T+IY+A+G+++GG+
Sbjct: 291 ENFADKR-------LIYNERRAIGKCPLTPEEVGLILRAMRFDNSTRIYLAAGELFGGEQ 343
Query: 420 RMAPLRNMFPNLVTKEELASQEELAGFRKHVTSLAALDFLVCLKSDVFVMTHGG--NFAK 477
M P R +FP L + EEL+ + + +A+D++VCL SD+F+ T+ G NFA
Sbjct: 344 FMKPFRTLFPRLDNHSSVDPSEELSATSQGLIG-SAVDYMVCLLSDIFMPTYDGPSNFAN 402
Query: 478 LIIGARRYMGHRYKSIKPDKGLMSKSFGDPYMGWASFVEDVV--VTHQTRTGLPEETFPN 535
++G R Y G R +I+PD+ ++ F G + E+ V V +T G P +
Sbjct: 403 NLLGHRLYYGFR-TTIRPDRKALAPIFIAREKGKRAGFEEAVRRVMLKTNFGGPHKRVSP 461
Query: 536 YDLWENPLTPCMCK 549
+ N C C+
Sbjct: 462 ESFYTNSWPECFCQ 475
>sp|Q2XPU7|LUPS_RICCO Lupeol synthase OS=Ricinus communis PE=1 SV=1
Length = 769
Score = 35.8 bits (81), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 36/71 (50%), Gaps = 4/71 (5%)
Query: 314 RMKNRTGSSNPYMALHLRFEKGMVGLSFCDFVGTREEKAKMAEYRKKEWPRRYK---NGS 370
R+K G +NPY+ F+ + + F GT EE+A++ E R+ W R++ N
Sbjct: 3 RIKIAEGGNNPYIYSTNNFQGRQIWV-FDPNAGTPEEQAEVEEARQNFWKNRFQVKPNSD 61
Query: 371 HLWQLALQKRK 381
LWQL + K
Sbjct: 62 LLWQLQFLREK 72
>sp|A3LNC4|U507_PICST UPF0507 protein PICST_55861 OS=Scheffersomyces stipitis (strain
ATCC 58785 / CBS 6054 / NBRC 10063 / NRRL Y-11545)
GN=PICST_55861 PE=3 SV=2
Length = 1194
Score = 33.9 bits (76), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 40/74 (54%), Gaps = 11/74 (14%)
Query: 208 DHFIDYLKDDVRIVRDIPDWFTDKSELFSSIRRTVKNIPKYAPAQ-----FYIDNVLPRI 262
D+ +D+L +D + ++ D+F FSS++ T+ N + + FYIDN LP++
Sbjct: 743 DNRLDFLLEDSKNCYNVFDYFG-----FSSMKSTIPN-ETFKKIESLIFGFYIDNFLPKV 796
Query: 263 KEKKIMALKPFVDR 276
KK+ +L D+
Sbjct: 797 DCKKLFSLNAKYDQ 810
>sp|Q493Q4|MRAY_BLOPB Phospho-N-acetylmuramoyl-pentapeptide-transferase OS=Blochmannia
pennsylvanicus (strain BPEN) GN=mraY PE=3 SV=1
Length = 362
Score = 33.9 bits (76), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 22/50 (44%), Gaps = 2/50 (4%)
Query: 94 NHLNAPYLCKKDGIVLHCPRVKEA--PSLWENPYSATTSWKPCAERRLGG 141
+HLN PY+C +++ C + A LW N Y A LGG
Sbjct: 227 SHLNIPYICFSGELIIICSAIIGAGLGFLWFNTYPAQIFMGDVGSLSLGG 276
>sp|Q5WEM1|Y2654_BACSK UPF0176 protein ABC2654 OS=Bacillus clausii (strain KSM-K16)
GN=ABC2654 PE=3 SV=1
Length = 322
Score = 33.5 bits (75), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 20/35 (57%)
Query: 205 FDVDHFIDYLKDDVRIVRDIPDWFTDKSELFSSIR 239
+DV HF ++ D++ R++PDW E F + R
Sbjct: 141 YDVGHFRGAIRPDIKAFRELPDWIRQNKEQFENKR 175
>sp|Q6AD57|SUCC_LEIXX Succinyl-CoA ligase [ADP-forming] subunit beta OS=Leifsonia xyli
subsp. xyli (strain CTCB07) GN=sucC PE=3 SV=1
Length = 387
Score = 33.1 bits (74), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 71/163 (43%), Gaps = 36/163 (22%)
Query: 367 KNGSHLWQLALQKRKE-GRCPLEP------GEVAVILRAMGYPKE-----TQIYVASGQV 414
+ G + QLA++K + R ++P + I RA G+P+E ++V V
Sbjct: 120 EGGMEIEQLAVEKPEALARIGVDPIAGVDTTKATEIARAAGFPEELVSKVADVFVKLYDV 179
Query: 415 YGGQNRMAPLRNMFPNLVTKE-EL------ASQEELAGFR----KHVTSLAALDFL---- 459
Y G++ A L + P ++T+E E+ + +E AGFR + + AA D L
Sbjct: 180 YKGED--ATLVEVNPLVLTEEGEVIALDGKVTLDENAGFRHPEHEELEDKAAADPLEAKA 237
Query: 460 -------VCLKSDVFVMTHGGNFAKLIIGARRYMGHRYKSIKP 495
V L V ++ +G + Y G R+K +KP
Sbjct: 238 KEADLNYVKLDGQVGIIGNGAGLVMSTLDVVAYAGERHKGVKP 280
>sp|Q6F1X3|KAD_MESFL Adenylate kinase OS=Mesoplasma florum (strain ATCC 33453 / NBRC
100688 / NCTC 11704 / L1) GN=adk PE=3 SV=1
Length = 212
Score = 33.1 bits (74), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 34/58 (58%), Gaps = 9/58 (15%)
Query: 261 RIKEKKIMALKPFVDRLGYDNVPPEI--NRL-------RCRVNYHALKFLPEIEQMSD 309
+I E+ ++ L +D++ Y +VP EI NR+ +C+V+YH + P++E + D
Sbjct: 92 KILEENLIELNAKIDKVIYIDVPSEILLNRISGRLICPKCKVSYHIISRKPKLEGICD 149
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.137 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 215,432,297
Number of Sequences: 539616
Number of extensions: 9274802
Number of successful extensions: 19603
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 19560
Number of HSP's gapped (non-prelim): 66
length of query: 550
length of database: 191,569,459
effective HSP length: 123
effective length of query: 427
effective length of database: 125,196,691
effective search space: 53458987057
effective search space used: 53458987057
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 64 (29.3 bits)