Query 008884
Match_columns 550
No_of_seqs 210 out of 411
Neff 4.4
Searched_HMMs 29240
Date Mon Mar 25 13:58:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008884.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008884hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4ap5_A GDP-fucose protein O-fu 99.5 1.4E-13 4.8E-18 143.6 16.4 307 150-490 20-383 (408)
2 3zy2_A Putative GDP-fucose pro 99.3 6.7E-11 2.3E-15 122.6 16.4 278 150-487 6-348 (362)
3 2hhc_A NODZ, nodulation fucosy 97.3 0.0023 7.9E-08 64.3 13.5 52 151-205 3-54 (330)
4 2de0_X Alpha-(1,6)-fucosyltran 97.1 0.029 9.9E-07 61.1 20.1 254 151-486 144-420 (526)
5 1wgl_A TOLL-interacting protei 38.4 14 0.00049 28.9 1.9 49 418-471 10-58 (59)
6 2g7j_A Putative cytoplasmic pr 23.9 28 0.00095 30.9 1.4 26 387-416 3-28 (124)
7 3l32_A Phosphoprotein; antipar 22.3 43 0.0015 25.2 2.0 21 297-317 2-22 (45)
8 2dhy_A CUE domain-containing p 20.6 26 0.00089 28.2 0.6 42 419-465 20-61 (67)
9 1l2m_A REP protein; A+B fold, 19.5 1E+02 0.0036 27.3 4.2 30 384-414 17-46 (118)
10 1p3q_Q VPS9P, vacuolar protein 15.7 40 0.0014 26.2 0.6 39 419-462 14-52 (54)
No 1
>4ap5_A GDP-fucose protein O-fucosyltransferase 2; GT-B, GT68; HET: NAG; 3.00A {Homo sapiens} PDB: 4ap6_A*
Probab=99.52 E-value=1.4e-13 Score=143.56 Aligned_cols=307 Identities=17% Similarity=0.253 Sum_probs=164.1
Q ss_pred CCCceEEEee-cC-ChhhHHHHHHHHHHHHHHhCce----EeeccccCCccccCC------CCCCccccHHHHHHHhccc
Q 008884 150 ETNGYIFIHA-EG-GLNQQRIAICNAVAVAKIMNAT----LILPVLKQDQIWKDQ------TKFEDIFDVDHFIDYLKDD 217 (550)
Q Consensus 150 ~snGYl~V~~-nG-GLNqqR~~IcDaVaVAriLNAT----LVlP~L~~~s~WkD~------S~F~dIFDvdhFI~sL~~d 217 (550)
..++||+-.. .| |.|+||...-.|.+.|+.||.| ||||-...---|+-. -.|++.||++++ +..
T Consensus 20 ~~~rYl~y~~~~g~Gfn~qrd~f~~~a~~a~~Lnrt~~~~LVLPPw~~~~h~~~~~~~~~~ipf~~fFDv~~L----~~~ 95 (408)
T 4ap5_A 20 SRRRYLLYDVNPPEGFNLRRDVYIRIASLLKTLLKTEEWVLVLPPWGRLYHWQSPDIHQVRIPWSEFFDLPSL----NKN 95 (408)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHHHHHHHHHHHTTSCEEEEECCBCCSCGGGSTTSCCCSBCGGGTBCHHHH----HTT
T ss_pred cccceEEecCCCCCcccHHHHHHHHHHHHHHHHhCcCCcEEEeCCCcccccccCCcccceeccHHHhcCHHHH----Hhh
Confidence 5789999865 45 8999999999999999999999 999966432233322 379999999865 455
Q ss_pred ceee------ccC-Ccccccc------cchh-hcc--ccc-cc---ccC-----C---CCCchhhhhhccccccccceeE
Q 008884 218 VRIV------RDI-PDWFTDK------SELF-SSI--RRT-VK---NIP-----K---YAPAQFYIDNVLPRIKEKKIMA 269 (550)
Q Consensus 218 VrIV------k~L-P~~~~~~------~~~~-~~i--~~~-~~---~~p-----~---~s~~~yY~~~vlP~l~~~~Vi~ 269 (550)
|+|| +++ |...... .+.. ... .+. .. .-+ + +.++.| +..........-+.
T Consensus 96 vpVI~meeFl~~~~~~~~~~v~~l~~~~~~~~~~~~~~k~~~~~c~~~~~~~~~~~~~~~gpfw--~~~~v~~~~~~c~~ 173 (408)
T 4ap5_A 96 IPVIEYEQFIAESGGPFIDQVYVLQSYAEGWKEGTWEEKVDERPCIDQLLYSQDKHEYYRGWFW--GYEETRGLNVSCLS 173 (408)
T ss_dssp SCEEEHHHHHHHSSSSEEEEEEEEECCTTCCCTTCCCCCEEEECCSSCCSCEECTTSCEECCGG--GCTTCEEEEEEEEE
T ss_pred CCeeEHHHHHHHhCCCCCcceeeccccHhhcccccccchhhhhhhhhccccccccccCccCCcc--cccccccCCceeEE
Confidence 6665 122 1100000 0000 000 000 00 000 0 001111 11111111111122
Q ss_pred EcccccccCC---CCCCcc---cccc-ceeec----------ccccccchHHHHHHHHHHHHHHhhcCCCCCcEEEeecc
Q 008884 270 LKPFVDRLGY---DNVPPE---INRL-RCRVN----------YHALKFLPEIEQMSDLLASRMKNRTGSSNPYMALHLRF 332 (550)
Q Consensus 270 l~~f~~rLa~---d~lP~e---iQrL-RCrvn----------f~ALrF~~~I~~lg~kLV~RmR~~s~~~~pfiAlHLRf 332 (550)
+.+..+.+.. ..-+.. +.+. .+.+. -..|+|.+.|.+.|++.++..-. ++|+++|+|.
T Consensus 174 ~~~~~~~~~~~~~~~~~~~s~~v~~~e~~l~~~~~~~~~~~~~r~l~~s~~l~~~a~~fi~~~L~-----~~~~~~h~r~ 248 (408)
T 4ap5_A 174 VQGSASIVAPLLLRNTSARSVMLDRAENLLHDHYGGKEYWDTRRSMVFARHLREVGDEFRSRHLN-----STDDADRIPF 248 (408)
T ss_dssp ECSBGGGGHHHHHHCTTCSEEEEESGGGSBCSSTTSHHHHHHHHTCCBCHHHHHHHHHHHHHHHC-----CCTTTTTCCC
T ss_pred EeecchhhhhhhhhcCChhhhhhhhcccCCccccchHhhhhHHHHhhhhHHHHHHHHHHHHHHhC-----cccceeeccc
Confidence 2221111110 000000 0000 00111 13689999999999998776543 4788888888
Q ss_pred cccccccccccCCCCHHHHHHHHHHHhhhccccccCCCchhhhHHhhhcCCCCCCChHHHHHHHHHhCCCCCcEEEEEec
Q 008884 333 EKGMVGLSFCDFVGTREEKAKMAEYRKKEWPRRYKNGSHLWQLALQKRKEGRCPLEPGEVAVILRAMGYPKETQIYVASG 412 (550)
Q Consensus 333 E~DMlAfSgC~~~g~~~E~~eL~~~R~~~W~~k~~~~~~~~~~~~~~R~~G~CPLtPeEvgl~LrALGf~~~T~IYlAsG 412 (550)
+.|+... |....... -..|-..||..... ..-....+|-.++-+..+.+.|-=-+-+.||||+-
T Consensus 249 ~~dw~~~--~~~~~~~~----~~~y~~~H~Rr~d~----------~~~~~~~~ps~~~~~~~i~~~~~~~~~~~VyiATD 312 (408)
T 4ap5_A 249 QEDWMKM--KVKLGSAL----GGPYLGVHLRRKDF----------IWGHRQDVPSLEGAVRKIRSLMKTHRLDKVFVATD 312 (408)
T ss_dssp CSSGGGC--CCCTTCBC----CEEEEEEEECCTTT----------TTTTCSSSCCHHHHHHHHHHHHHHHTCSCEEEEEC
T ss_pred chhHhhh--hccccccc----CCCccccccccccc----------hhhhhccCCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 8887653 43211100 00000012211000 00011223333333333333333234458999986
Q ss_pred cccCcccchhhHHHhCCCcccccccCCHHHHhhhhccccchhhhhhhhhccccceeecCCCchHHHHhHhhhhcCCcc
Q 008884 413 QVYGGQNRMAPLRNMFPNLVTKEELASQEELAGFRKHVTSLAALDFLVCLKSDVFVMTHGGNFAKLIIGARRYMGHRY 490 (550)
Q Consensus 413 eiyGG~~~l~pLr~~FPnl~tKe~L~s~eEL~~f~~~ss~~AALDYiVcl~SDVFv~t~~GNfa~~V~GhR~y~G~~~ 490 (550)
+. +..+.-|++.+|.++.-.. ..+++..+. ..+.|.||-+||.+||+||+|..++|+..|.=.|.+.|+..
T Consensus 313 ~~---~~~~~~l~~~~~~~~~~~~--~~~~~~~~~--d~~~a~idq~Ic~~a~~FiGt~~StfS~~I~~eR~~~G~~~ 383 (408)
T 4ap5_A 313 AV---RKEYEELKKLLPEMVRFEP--TWEELELYK--DGGVAIIDQWICAHARFFIGTSVSTFSFRIHEEREILGLDP 383 (408)
T ss_dssp CC---HHHHHHHHHHCTTEECCCC--CHHHHHHHH--HHHHHHHHHHHHHTEEEEEBCTTCHHHHHHHHHHHHHTBCG
T ss_pred Cc---hhHHHHHHHhCCCcEEecC--cchhhhccC--cchhhHHHHHHHHhCCeeEeCCcCchhHHHHHHHHhcCCCC
Confidence 42 3346789999998654332 345555543 23579999999999999999999999999999999999863
No 2
>3zy2_A Putative GDP-fucose protein O-fucosyltransferase; glycosyltransferase, GT-B, catalytic mechanism,; HET: GDP; 1.54A {Caenorhabditis elegans} PDB: 3zy3_A* 3zy4_A* 3zy5_A* 3zy6_A*
Probab=99.27 E-value=6.7e-11 Score=122.59 Aligned_cols=278 Identities=18% Similarity=0.302 Sum_probs=161.0
Q ss_pred CCCceEEE-eecCChhhHHHHHHHHHHHHHHhCceEeeccccCCcccc-CCCCCCccccHHHHHHHhcccceee------
Q 008884 150 ETNGYIFI-HAEGGLNQQRIAICNAVAVAKIMNATLILPVLKQDQIWK-DQTKFEDIFDVDHFIDYLKDDVRIV------ 221 (550)
Q Consensus 150 ~snGYl~V-~~nGGLNqqR~~IcDaVaVAriLNATLVlP~L~~~s~Wk-D~S~F~dIFDvdhFI~sL~~dVrIV------ 221 (550)
.+||||+- -|-|-+.||-....-+.+.|+.||.|||||-+-.-..-+ ---.|++.|+++. |+..-|||
T Consensus 6 d~~Gyi~yCPCMGRFGNQadhfLG~LafAk~lnRTLvlPpwi~y~~~~~~~vpf~~yF~v~~----l~~yhrvi~me~Fm 81 (362)
T 3zy2_A 6 DPNGYIVFCPCMGRFGNQVDQFLGVLAFAKALDRTLVLPNFIEFKHPETKMIPFEFLFQVGT----VAKYTRVVTMQEFT 81 (362)
T ss_dssp CTTCEEEECCCSSSHHHHHHHHHHHHHHHHHHTCEEECCCEEECSSSSCEEECHHHHBCHHH----HTTTSCEECHHHHH
T ss_pred CCCccEEeCCCcCccccHHHHHHHHHHHHHhhCceEecCccccccCCcccccchhheeecch----hhhhceeeeHHHHH
Confidence 36999998 799999999999999999999999999999764222211 0125888898875 44444555
Q ss_pred ccC-----Ccccccccchh----hcc-cc-cccccCC---------C--CCchh-----------------------hhh
Q 008884 222 RDI-----PDWFTDKSELF----SSI-RR-TVKNIPK---------Y--APAQF-----------------------YID 256 (550)
Q Consensus 222 k~L-----P~~~~~~~~~~----~~i-~~-~~~~~p~---------~--s~~~y-----------------------Y~~ 256 (550)
++| |.+- |.-+- ... .. ..+..+. | -+.+| +.+
T Consensus 82 ~~lap~~WP~~~--R~~~C~~~~~~~~~~~~~~~C~~K~GNPFgpfWd~f~v~F~~se~~~~~~~~l~~~~~~~~~~W~~ 159 (362)
T 3zy2_A 82 KKIMPTVWPPEK--RKAFCWTPRQAIYDKSAEPGCHSKEGNPFGPYWDQIDVSFVGDEYFGDIPGGFDLNQMGSRKKWLE 159 (362)
T ss_dssp HHTHHHHSCGGG--CEEEESSCBC-------CCBCCTTSSTTHHHHHHHTTCCCCEEEECTTSTTTTCC-------CHHH
T ss_pred HHhccccCCccc--ceEeeccccccccCCCCCCCCCCCCCCCCCcchhccccccccceeccCccccccccchhHHHHHHH
Confidence 222 2211 00000 000 00 0001111 1 00111 111
Q ss_pred hccccccccceeEEcccccccCCCCCCccccccceeecccccccchHHHHHHHHHHHHHHhhcCCCCCcEEEeecccccc
Q 008884 257 NVLPRIKEKKIMALKPFVDRLGYDNVPPEINRLRCRVNYHALKFLPEIEQMSDLLASRMKNRTGSSNPYMALHLRFEKGM 336 (550)
Q Consensus 257 ~vlP~l~~~~Vi~l~~f~~rLa~d~lP~eiQrLRCrvnf~ALrF~~~I~~lg~kLV~RmR~~s~~~~pfiAlHLRfE~DM 336 (550)
+.-| .+|-|+.|++--. ++- ...|- |.-=.-|+++++|.+.|++.++.-- .+||||+|||--.|+
T Consensus 160 ~~p~--~~~pVlAf~gaPa--~FP-v~~e~-----r~LqkYm~WS~~i~~~a~~fI~~~L-----~rpyVgIHLR~G~DW 224 (362)
T 3zy2_A 160 KFPS--EEYPVLAFSSAPA--PFP-SKGKV-----WSIQKYLRWSSRITEQAKKFISANL-----AKPFVAVHLRNDADW 224 (362)
T ss_dssp HSCT--TTCSEEEESSCSS--CSS-CCGGG-----GGGGGGCCBCHHHHHHHHHHHHHHC-----CSSEEEEEECCCHHH
T ss_pred hCCc--ccCceEeecCCCC--CCC-cChhh-----HhHHHhccccHHHHHHHHHHHHHhc-----CCCeEEEEEecCCcH
Confidence 1111 2667877764211 111 11121 1112248999999999999877632 359999999999999
Q ss_pred cccccccCCCCHHHHHHHHHHHhhhccccccCCCchhhhHH---hhhcCC-----CCCCChHH----HHHHHHHhCCCCC
Q 008884 337 VGLSFCDFVGTREEKAKMAEYRKKEWPRRYKNGSHLWQLAL---QKRKEG-----RCPLEPGE----VAVILRAMGYPKE 404 (550)
Q Consensus 337 lAfSgC~~~g~~~E~~eL~~~R~~~W~~k~~~~~~~~~~~~---~~R~~G-----~CPLtPeE----vgl~LrALGf~~~ 404 (550)
.-. |.+--. |. +.++...+. -+...| .|==+-++ |..+++.++ -
T Consensus 225 ~~a--C~hlk~--------------~~-----~~~lfaSPQC~Gy~~~~~~lt~emClPSle~I~rqIk~~vk~~~---l 280 (362)
T 3zy2_A 225 VRV--CEHIDT--------------TT-----NRPLFASEQCLGEGHHLGTLTKEICSPSKQQILEQIVEKVGSIG---A 280 (362)
T ss_dssp HHH--HHTCCT--------------TT-----CCCCTTTHHHHCGGGTTCCCCHHHHSCCHHHHHHHHHHHHHHHT---C
T ss_pred HHH--Hhhhcc--------------cc-----CcccccCCcccCCcccCcccchhccCCCHHHHHHHHHHHHHhcC---C
Confidence 865 865110 00 000000000 011111 23122333 344555555 4
Q ss_pred cEEEEEeccccCcccchhhHHHhCCCcccccccCCHHHHhhhhccccchhhhhhhhhccccceeecCCCchHHHHhHhhh
Q 008884 405 TQIYVASGQVYGGQNRMAPLRNMFPNLVTKEELASQEELAGFRKHVTSLAALDFLVCLKSDVFVMTHGGNFAKLIIGARR 484 (550)
Q Consensus 405 T~IYlAsGeiyGG~~~l~pLr~~FPnl~tKe~L~s~eEL~~f~~~ss~~AALDYiVcl~SDVFv~t~~GNfa~~V~GhR~ 484 (550)
..||||+-.. ..++-|++.|+....+ +.+ +. .-.|+||-+||.+||+||+|..++|...|.=.|-
T Consensus 281 ksVFIATDa~----~~~~ELk~~L~~~~v~--vv~------~~---pe~a~ID~~I~~~A~~FIGN~~SSFSa~I~rERd 345 (362)
T 3zy2_A 281 KSVFVASDKD----HMIDEINEALKPYEIE--AHR------QE---PDDMYTSLAIMGRADLFVGNCVSTFSHIVKRERD 345 (362)
T ss_dssp SEEEEEESSC----CCHHHHHHHHGGGTCC--EEC------CS---SCCHHHHHHHHHHSSEEEECTTCHHHHHHHHHHH
T ss_pred cEEEEecCCH----HHHHHHHHHhhccCce--EEE------eC---CchhHHHHHHHHhCCEeecCccccccHHHHHHHH
Confidence 4999999643 3577888888642111 111 00 0179999999999999999999999999999999
Q ss_pred hcC
Q 008884 485 YMG 487 (550)
Q Consensus 485 y~G 487 (550)
..|
T Consensus 346 i~G 348 (362)
T 3zy2_A 346 HAG 348 (362)
T ss_dssp HSS
T ss_pred hcC
Confidence 999
No 3
>2hhc_A NODZ, nodulation fucosyltransferase NODZ; glycosyltransferase; 1.54A {Bradyrhizobium SP} PDB: 2hlh_A 2ocx_A* 3siw_A* 3six_A*
Probab=97.32 E-value=0.0023 Score=64.33 Aligned_cols=52 Identities=13% Similarity=0.212 Sum_probs=41.2
Q ss_pred CCceEEEeecCChhhHHHHHHHHHHHHHHhCceEeeccccCCccccCCCCCCccc
Q 008884 151 TNGYIFIHAEGGLNQQRIAICNAVAVAKIMNATLILPVLKQDQIWKDQTKFEDIF 205 (550)
Q Consensus 151 snGYl~V~~nGGLNqqR~~IcDaVaVAriLNATLVlP~L~~~s~WkD~S~F~dIF 205 (550)
+..||++...|||.+|=-+++.|.++|...|.+|+|--.. ..|-. ..|.+.|
T Consensus 3 ~~r~iv~~~~gGLGNqm~~~a~a~~~A~~t~r~l~vd~~~-~~y~~--~~~~~~f 54 (330)
T 2hhc_A 3 KERFVISRRRTGFGDCLWSLASAWSYAQRTGRTLVIDWRG-SCYVE--QPFSNAF 54 (330)
T ss_dssp CCCEEEEECCSCHHHHHHHHHHHHHHHHHHTCEEEEECBT-CTTCS--STTSBSH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHHHHHHhCCEEEEECCC-cccCC--CCccccC
Confidence 5679999999999999999999999999999998886443 22321 3455666
No 4
>2de0_X Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltransferase, N-glycan, COR SH3 domain; 2.61A {Homo sapiens}
Probab=97.10 E-value=0.029 Score=61.15 Aligned_cols=254 Identities=15% Similarity=0.194 Sum_probs=135.6
Q ss_pred CCceEEEee--cCChhhHHHHHHHHHHHHHHhCceEeeccccCCccccC-CCCCCccccHHHHHHHhcccceeeccCCcc
Q 008884 151 TNGYIFIHA--EGGLNQQRIAICNAVAVAKIMNATLILPVLKQDQIWKD-QTKFEDIFDVDHFIDYLKDDVRIVRDIPDW 227 (550)
Q Consensus 151 snGYl~V~~--nGGLNqqR~~IcDaVaVAriLNATLVlP~L~~~s~WkD-~S~F~dIFDvdhFI~sL~~dVrIVk~LP~~ 227 (550)
+..||+... ..|+..+-..++=|..+|-.+|.|||+-.=. |.- ...|.++|.. +...+... |.
T Consensus 144 ~aK~Lv~~~~~~~GfGs~lh~l~~~L~~A~~~~Rtliidd~~----w~Y~~g~w~~yF~P--~s~~C~~~-------~~- 209 (526)
T 2de0_X 144 KAKKLVCNINKGCGYGCQLHHVVYCFMIAYGTQRTLILESQN----WRYATGGWETVFRP--VSETCTDR-------SG- 209 (526)
T ss_dssp GSCEEEEECCCSSCHHHHHHHHHHHHHHHHHHTCEEEEECTT----CSSCTTCGGGTBCC--SCSSCCCC-------CC-
T ss_pred CCCEEEEEecCCCchHHHHHHHHHHHHHHHhhCCEEEEECCC----CCcCCCCHHHhhhC--cCccccCC-------Cc-
Confidence 457888876 5799999999999999999999999994432 332 2467777764 11111110 00
Q ss_pred cccccchhhcccccccccCCCCCchhhhhhccccccccceeEEcccc--c---ccCCCCCCccc----cccc--------
Q 008884 228 FTDKSELFSSIRRTVKNIPKYAPAQFYIDNVLPRIKEKKIMALKPFV--D---RLGYDNVPPEI----NRLR-------- 290 (550)
Q Consensus 228 ~~~~~~~~~~i~~~~~~~p~~s~~~yY~~~vlP~l~~~~Vi~l~~f~--~---rLa~d~lP~ei----QrLR-------- 290 (550)
.....|..... -..+.||.+.-.+ + ....-.+|.++ +++.
T Consensus 210 ---------------~~~~~w~~~~~--------~~~~~vV~~~~i~~~~~~~~~~~~~~P~~~~~~L~~l~~dp~~w~~ 266 (526)
T 2de0_X 210 ---------------ISTGHWSGEVK--------DKNVQVVELPIVDSLHPRPPYLPLAVPEDLADRLVRVHGDPAVWWV 266 (526)
T ss_dssp ---------------SCCCBCCCTTG--------GGGCSEEEECCGGGCSSCCSCCTTCEEGGGHHHHHHHCSCHHHHHH
T ss_pred ---------------cccCCCCCccc--------CCCcceEEeeccccccccccccccccchhHHHHHHhccCCcHHHHH
Confidence 01111211100 0122333221111 0 00000233322 2221
Q ss_pred eeecccccccchHHHHHHHHHHHHHHhhcCCCCCcEEEeecccccccccccccCCCCHHHHHHHHHHHhhhccccccCCC
Q 008884 291 CRVNYHALKFLPEIEQMSDLLASRMKNRTGSSNPYMALHLRFEKGMVGLSFCDFVGTREEKAKMAEYRKKEWPRRYKNGS 370 (550)
Q Consensus 291 Crvnf~ALrF~~~I~~lg~kLV~RmR~~s~~~~pfiAlHLRfE~DMlAfSgC~~~g~~~E~~eL~~~R~~~W~~k~~~~~ 370 (550)
-.+.-.-+|+.++|++..+++.+.+.- ++|.|+||.|-- |-+... =.+...++ -+..... |
T Consensus 267 ~q~~~yl~rP~~~i~~~I~~~~~~l~~----~~piVGVHIRrG-Dk~~~E-~~~~~~~~---Y~~~v~~--~-------- 327 (526)
T 2de0_X 267 SQFVKYLIRPQPWLEKEIEEATKKLGF----KHPVIGVHVRRT-DKVGTE-AAFHPIEE---YMVHVEE--H-------- 327 (526)
T ss_dssp HHHHHHHTCBCHHHHHHHHHHHHHHTC----CSSEEEEEECCC------C-CCSCSHHH---HHHHHHH--H--------
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhCC----CCCEEEEEEeCC-CCCccc-cccCCHHH---HHHHHHH--H--------
Confidence 111112478999999988888777642 579999999954 322110 00111011 1111100 1
Q ss_pred chhhhHHhhhcCCCCCCChHHHHHHHHHhCCCCCcEEEEEeccccCcccchhhHHHhCCCc--ccccccC-CHHHHhhhh
Q 008884 371 HLWQLALQKRKEGRCPLEPGEVAVILRAMGYPKETQIYVASGQVYGGQNRMAPLRNMFPNL--VTKEELA-SQEELAGFR 447 (550)
Q Consensus 371 ~~~~~~~~~R~~G~CPLtPeEvgl~LrALGf~~~T~IYlAsGeiyGG~~~l~pLr~~FPnl--~tKe~L~-s~eEL~~f~ 447 (550)
-..|+.......+.||||+-+. +.++-+++.||+. ++-.... +...-..+.
T Consensus 328 ----------------------~~~l~~~~~~~~~~ifLATDDp----~v~~e~k~~~p~~~~~~d~~~~~~a~~~~R~s 381 (526)
T 2de0_X 328 ----------------------FQLLARRMQVDKKRVYLATDDP----SLLKEAKTKYPNYEFISDNSISWSAGLHNRYT 381 (526)
T ss_dssp ----------------------HHHHHTTSCCSSCEEEEEESCH----HHHHHHHHHCTTSEEECCCCSSCSSGGGGGTC
T ss_pred ----------------------HHHHHhhcCCCCCeEEEEcCCH----HHHHHHHHhCCCCEEecCcccccccCcccccc
Confidence 0012222457788999998874 5677888889985 3221111 111111111
Q ss_pred ccccchhhhhhhhhccccceeecCCCchHHHHhHhhhhc
Q 008884 448 KHVTSLAALDFLVCLKSDVFVMTHGGNFAKLIIGARRYM 486 (550)
Q Consensus 448 ~~ss~~AALDYiVcl~SDVFv~t~~GNfa~~V~GhR~y~ 486 (550)
..+-..+.+|.++..++|+||+|.++||++++...+.-.
T Consensus 382 ~~~l~~~l~DL~lLs~cd~~Vgt~sS~~srla~~l~~~~ 420 (526)
T 2de0_X 382 ENSLRGVILDIHFLSQADFLVCTFSSQVCRVAYEIMQTL 420 (526)
T ss_dssp CTHHHHHHHHHHHHHHSSEEEECTTSHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHhcCCeeecCCCCHHHHHHHHHhcCc
Confidence 111135889999999999999999999999988766443
No 5
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=38.42 E-value=14 Score=28.92 Aligned_cols=49 Identities=18% Similarity=0.311 Sum_probs=33.0
Q ss_pred ccchhhHHHhCCCcccccccCCHHHHhhhhccccchhhhhhhhhccccceeecC
Q 008884 418 QNRMAPLRNMFPNLVTKEELASQEELAGFRKHVTSLAALDFLVCLKSDVFVMTH 471 (550)
Q Consensus 418 ~~~l~pLr~~FPnl~tKe~L~s~eEL~~f~~~ss~~AALDYiVcl~SDVFv~t~ 471 (550)
+..++-|++|||++ +++.+- .-|. .+..+..+|||-+..+..+-|=|++
T Consensus 10 ee~l~~L~emFP~l-d~~~I~--~vL~--a~~gdvd~aI~~LL~m~~~~~~~~~ 58 (59)
T 1wgl_A 10 EEDLKAIQDMFPNM-DQEVIR--SVLE--AQRGNKDAAINSLLQMGEEPSGPSS 58 (59)
T ss_dssp HHHHHHHHHHCSSS-CHHHHH--HHHT--TTTTCHHHHHHHHHHSSCCCCSCCC
T ss_pred HHHHHHHHHHCCCC-CHHHHH--HHHH--HcCCCHHHHHHHHHcCcCCCCCCCC
Confidence 46788999999994 443331 1121 1345578999999998888776654
No 6
>2g7j_A Putative cytoplasmic protein; STR72, autostructure, structural genomics, PSI, protein STRU initiative; NMR {Salmonella typhimurium} SCOP: d.198.5.1
Probab=23.89 E-value=28 Score=30.95 Aligned_cols=26 Identities=35% Similarity=0.705 Sum_probs=20.3
Q ss_pred CChHHHHHHHHHhCCCCCcEEEEEeccccC
Q 008884 387 LEPGEVAVILRAMGYPKETQIYVASGQVYG 416 (550)
Q Consensus 387 LtPeEvgl~LrALGf~~~T~IYlAsGeiyG 416 (550)
|-|.||+.+|...||..+.. +-+.||
T Consensus 3 LRPDEVArVLEk~GF~~D~v----t~kaYG 28 (124)
T 2g7j_A 3 LRPDEVARVLEKAGFTVDVV----TNKTYG 28 (124)
T ss_dssp CCHHHHHHHHHHTTCEEEEE----ETTEEE
T ss_pred cChHHHHHHHHHcCceEEEe----eccccc
Confidence 67999999999999986543 345565
No 7
>3l32_A Phosphoprotein; antiparallel alpha-helices, viral protein, dimerisation domain; 1.50A {Rabies virus}
Probab=22.29 E-value=43 Score=25.22 Aligned_cols=21 Identities=14% Similarity=0.327 Sum_probs=18.3
Q ss_pred ccccchHHHHHHHHHHHHHHh
Q 008884 297 ALKFLPEIEQMSDLLASRMKN 317 (550)
Q Consensus 297 ALrF~~~I~~lg~kLV~RmR~ 317 (550)
++-|+.-+.++|.++|+||++
T Consensus 2 ~vpfQs~LD~vG~qiVrkmKt 22 (45)
T 3l32_A 2 NLLFQSYLDNVGVQIVRQMRS 22 (45)
T ss_dssp CHHHHHHHHHHHHHHHHHHTT
T ss_pred CccHHHHHHHHHHHHHHHHHc
Confidence 456788899999999999987
No 8
>2dhy_A CUE domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.65 E-value=26 Score=28.23 Aligned_cols=42 Identities=21% Similarity=0.341 Sum_probs=26.9
Q ss_pred cchhhHHHhCCCcccccccCCHHHHhhhhccccchhhhhhhhhcccc
Q 008884 419 NRMAPLRNMFPNLVTKEELASQEELAGFRKHVTSLAALDFLVCLKSD 465 (550)
Q Consensus 419 ~~l~pLr~~FPnl~tKe~L~s~eEL~~f~~~ss~~AALDYiVcl~SD 465 (550)
..++-|++|||++ +++.| ..-|. .+..+..+|||-+..+..|
T Consensus 20 ~~v~~L~~MFP~l-D~~vI--~~vL~--a~~G~vd~aId~LL~ms~~ 61 (67)
T 2dhy_A 20 QAMDDFKTMFPNM-DYDII--ECVLR--ANSGAVDATIDQLLQMNLE 61 (67)
T ss_dssp HHHHHHHHHCSSS-CHHHH--HHHHH--HHTSCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHCCCC-CHHHH--HHHHH--HcCCCHHHHHHHHHhcCCC
Confidence 4678899999994 44443 23332 2455677889877665543
No 9
>1l2m_A REP protein; A+B fold, RBD-like fold, viral protein; NMR {Tomato yellow leaf curl sardiniavirus} SCOP: d.89.1.4 PDB: 1l5i_A
Probab=19.45 E-value=1e+02 Score=27.31 Aligned_cols=30 Identities=10% Similarity=0.352 Sum_probs=23.1
Q ss_pred CCCCChHHHHHHHHHhCCCCCcEEEEEeccc
Q 008884 384 RCPLEPGEVAVILRAMGYPKETQIYVASGQV 414 (550)
Q Consensus 384 ~CPLtPeEvgl~LrALGf~~~T~IYlAsGei 414 (550)
.||||+||+...|+.|--+.+ ..||...+-
T Consensus 17 ~c~l~Ke~~l~~l~~l~~p~~-~~yi~i~rE 46 (118)
T 1l2m_A 17 KCDLTKENALSQITNLQTPTN-KLFIKICRE 46 (118)
T ss_dssp TCCCCHHHHHHHHHHCCCSSC-EEEEEEEEE
T ss_pred CCCCCHHHHHHHHHhhcCCcc-eeeeeehhh
Confidence 699999999999999875543 566665543
No 10
>1p3q_Q VPS9P, vacuolar protein sorting-associated protein VPS9; trafficking, post translational modification, mono- ubiquitination; 1.70A {Saccharomyces cerevisiae} SCOP: a.5.2.4 PDB: 1mn3_A
Probab=15.70 E-value=40 Score=26.25 Aligned_cols=39 Identities=21% Similarity=0.372 Sum_probs=21.0
Q ss_pred cchhhHHHhCCCcccccccCCHHHHhhhhccccchhhhhhhhhc
Q 008884 419 NRMAPLRNMFPNLVTKEELASQEELAGFRKHVTSLAALDFLVCL 462 (550)
Q Consensus 419 ~~l~pLr~~FPnl~tKe~L~s~eEL~~f~~~ss~~AALDYiVcl 462 (550)
..+..|++|||++ ++|-+- .-| ..+.+..-+|||....+
T Consensus 14 ~~~~~L~~MFP~l-D~evI~--~Vl--~a~~G~~~~~IdaLLqm 52 (54)
T 1p3q_Q 14 DTLNTLQNMFPDM-DPSLIE--DVC--IAAASRIGPCVDALLSL 52 (54)
T ss_dssp HHHHHHHHHSTTS-CHHHHH--HHH--HHSCC--CGGGC-----
T ss_pred HHHHHHHHHcccC-CHHHHH--HHH--HHcCCCHHHHHHHHHhh
Confidence 3578999999994 554442 223 33556677888876543
Done!