Query 008884
Match_columns 550
No_of_seqs 210 out of 411
Neff 4.4
Searched_HMMs 13730
Date Mon Mar 25 13:58:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008884.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/008884hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1wgla_ a.5.2.4 (A:) Toll-inte 40.3 5.8 0.00042 29.6 1.8 50 417-471 9-58 (59)
2 d2ihoa2 d.3.1.18 (A:156-293) A 36.5 2.9 0.00021 35.6 -0.5 36 183-218 31-71 (138)
3 d1l5ia_ d.89.1.4 (A:) DNA-bind 26.5 29 0.0021 28.9 4.2 31 384-415 17-47 (118)
4 d1oqya2 a.5.2.1 (A:317-360) DN 16.9 11 0.00083 26.5 -0.4 26 388-413 1-30 (44)
5 d2g7ja1 d.198.5.1 (A:1-112) Pu 16.8 26 0.0019 28.6 1.8 26 387-416 3-28 (112)
6 d1mn3a_ a.5.2.4 (A:) Vacuolar 14.2 22 0.0016 25.9 0.5 37 419-460 14-50 (54)
7 d2axti1 f.23.37.1 (I:1-35) Pho 14.2 50 0.0037 21.9 2.3 15 74-88 11-25 (35)
8 d1jjcb2 a.6.1.1 (B:400-474) Do 13.7 57 0.0041 24.3 2.9 25 377-402 11-35 (75)
9 d2fr5a1 c.97.1.1 (A:11-146) mo 13.5 53 0.0038 27.3 2.9 100 325-438 27-133 (136)
10 d1vjna_ d.157.1.4 (A:) Hypothe 12.5 94 0.0069 26.7 4.5 55 154-216 130-184 (209)
No 1
>d1wgla_ a.5.2.4 (A:) Toll-interacting protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=40.34 E-value=5.8 Score=29.64 Aligned_cols=50 Identities=18% Similarity=0.315 Sum_probs=34.4
Q ss_pred cccchhhHHHhCCCcccccccCCHHHHhhhhccccchhhhhhhhhccccceeecC
Q 008884 417 GQNRMAPLRNMFPNLVTKEELASQEELAGFRKHVTSLAALDFLVCLKSDVFVMTH 471 (550)
Q Consensus 417 G~~~l~pLr~~FPnl~tKe~L~s~eEL~~f~~~ss~~AALDYiVcl~SDVFv~t~ 471 (550)
-++.+..|++|||++ +++.+- .-|.. +..+..+|||=+.-+.-+.|-|+.
T Consensus 9 ~Ee~i~~LkeMFP~~-D~~vI~--~VL~a--~~G~vd~aid~LL~Msd~~~gp~s 58 (59)
T d1wgla_ 9 SEEDLKAIQDMFPNM-DQEVIR--SVLEA--QRGNKDAAINSLLQMGEEPSGPSS 58 (59)
T ss_dssp CHHHHHHHHHHCSSS-CHHHHH--HHHTT--TTTCHHHHHHHHHHSSCCCCSCCC
T ss_pred cHHHHHHHHHHCCCC-CHHHHH--HHHHH--cCCCHHHHHHHHHhcCCCCcCCCC
Confidence 356789999999995 333331 22322 456678999988888888877764
No 2
>d2ihoa2 d.3.1.18 (A:156-293) Agglutinin MOA {Fairy-ring mushroom (Marasmius oreades) [TaxId: 181124]}
Probab=36.50 E-value=2.9 Score=35.57 Aligned_cols=36 Identities=42% Similarity=0.609 Sum_probs=30.0
Q ss_pred eEeeccccCCccccCC-----CCCCccccHHHHHHHhcccc
Q 008884 183 TLILPVLKQDQIWKDQ-----TKFEDIFDVDHFIDYLKDDV 218 (550)
Q Consensus 183 TLVlP~L~~~s~WkD~-----S~F~dIFDvdhFI~sL~~dV 218 (550)
-||+|...-+++|+++ ..=+.|||-|.|--..|.-|
T Consensus 31 YLVLp~~~~s~IWk~SGL~~t~~R~~I~D~DdFA~~~KaAv 71 (138)
T d2ihoa2 31 YLVLPNATFTQIWKDSGLPGSKWREQIYDCDDFAIAMKAAV 71 (138)
T ss_dssp EECCCHHHHHHHHHTTTCTTCCCBTTTBCHHHHHHHHHHHH
T ss_pred EEEechHHHHHHHhccCCCCCcccccccccHHHHHHHHHHH
Confidence 3999999999999984 25678999999988887553
No 3
>d1l5ia_ d.89.1.4 (A:) DNA-binding domain of REP protein {Geminivirus (Tomato yellow leaf curl virus - sardinia) [TaxId: 123735]}
Probab=26.46 E-value=29 Score=28.86 Aligned_cols=31 Identities=10% Similarity=0.326 Sum_probs=23.5
Q ss_pred CCCCChHHHHHHHHHhCCCCCcEEEEEecccc
Q 008884 384 RCPLEPGEVAVILRAMGYPKETQIYVASGQVY 415 (550)
Q Consensus 384 ~CPLtPeEvgl~LrALGf~~~T~IYlAsGeiy 415 (550)
+|||||||+...|+.|--+.+. .||..++-.
T Consensus 17 ~C~l~ke~~l~~l~~l~~p~~~-~~i~v~rE~ 47 (118)
T d1l5ia_ 17 KCDLTKENALSQITNLQTPTNK-LFIKICREL 47 (118)
T ss_dssp TCCCCHHHHHHHHHHCCCSSCE-EEEEEEEEE
T ss_pred CCCCCHHHHHHHHHHhcCCcce-eEEEEcccc
Confidence 6999999999999998765544 566655543
No 4
>d1oqya2 a.5.2.1 (A:317-360) DNA repair protein Hhr23a {Human (Homo sapiens) [TaxId: 9606]}
Probab=16.92 E-value=11 Score=26.52 Aligned_cols=26 Identities=31% Similarity=0.593 Sum_probs=18.1
Q ss_pred ChHHHHH--HHHHhCCCCCcE--EEEEecc
Q 008884 388 EPGEVAV--ILRAMGYPKETQ--IYVASGQ 413 (550)
Q Consensus 388 tPeEvgl--~LrALGf~~~T~--IYlAsGe 413 (550)
||+|... =|.+|||+++.. +|+|-.+
T Consensus 1 T~ee~~aIeRL~~LGF~r~~viqay~ACdK 30 (44)
T d1oqya2 1 TPQEKEAIERLKALGFPESLVIQAYFACEK 30 (44)
T ss_dssp CTTTHHHHHHHHHHTCCSHHHHHHTSSSSS
T ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHhCc
Confidence 5666553 478999999874 5766554
No 5
>d2g7ja1 d.198.5.1 (A:1-112) Putative cytoplasmic protein YgaC {Salmonella typhimurium [TaxId: 90371]}
Probab=16.84 E-value=26 Score=28.56 Aligned_cols=26 Identities=38% Similarity=0.768 Sum_probs=19.9
Q ss_pred CChHHHHHHHHHhCCCCCcEEEEEeccccC
Q 008884 387 LEPGEVAVILRAMGYPKETQIYVASGQVYG 416 (550)
Q Consensus 387 LtPeEvgl~LrALGf~~~T~IYlAsGeiyG 416 (550)
|-|.||+.+|+..||..+. + +-+.||
T Consensus 3 LRPDEVArVLe~aGF~~d~---v-t~kaYG 28 (112)
T d2g7ja1 3 LRPDEVARVLEKAGFTVDV---V-TNKTYG 28 (112)
T ss_dssp CCHHHHHHHHHHTTCEEEE---E-ETTEEE
T ss_pred cChHHHHHHHHHcCceEEE---e-eccccc
Confidence 6799999999999998543 2 345565
No 6
>d1mn3a_ a.5.2.4 (A:) Vacuolar protein sorting-associated protein vps9 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=14.24 E-value=22 Score=25.92 Aligned_cols=37 Identities=22% Similarity=0.430 Sum_probs=22.2
Q ss_pred cchhhHHHhCCCcccccccCCHHHHhhhhccccchhhhhhhh
Q 008884 419 NRMAPLRNMFPNLVTKEELASQEELAGFRKHVTSLAALDFLV 460 (550)
Q Consensus 419 ~~l~pLr~~FPnl~tKe~L~s~eEL~~f~~~ss~~AALDYiV 460 (550)
..++.|++|||++ +++-+ ..-| ..+.++..+|||-..
T Consensus 14 e~~~~Lk~MFP~~-D~~VI--~~VL--~a~~G~vd~aidaLL 50 (54)
T d1mn3a_ 14 DTLNTLQNMFPDM-DPSLI--EDVC--IAKKSRIEPCVDALL 50 (54)
T ss_dssp HHHHHHHHHCTTS-CHHHH--HHHH--SCSSCSHHHHHHHHH
T ss_pred HHHHHHHHHCCCC-CHHHH--HHHH--HHcCCCHHHHHHHHH
Confidence 4688999999995 33332 1222 224556677777543
No 7
>d2axti1 f.23.37.1 (I:1-35) Photosystem II reaction center protein I, PsbI {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=14.16 E-value=50 Score=21.90 Aligned_cols=15 Identities=20% Similarity=0.454 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHH
Q 008884 74 SLCLALFVVVAGLIS 88 (550)
Q Consensus 74 ~~~~~~~l~~~~~~~ 88 (550)
.|+.+..||+.||+|
T Consensus 11 vV~fFv~lFiFGFLS 25 (35)
T d2axti1 11 VVTFFVLLFVFGFLS 25 (35)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhcc
Confidence 455666777777764
No 8
>d1jjcb2 a.6.1.1 (B:400-474) Domains B1 and B5 of PheRS-beta, PheT {Thermus thermophilus [TaxId: 274]}
Probab=13.66 E-value=57 Score=24.30 Aligned_cols=25 Identities=24% Similarity=0.347 Sum_probs=21.1
Q ss_pred HhhhcCCCCCCChHHHHHHHHHhCCC
Q 008884 377 LQKRKEGRCPLEPGEVAVILRAMGYP 402 (550)
Q Consensus 377 ~~~R~~G~CPLtPeEvgl~LrALGf~ 402 (550)
...+..|.. ++++|+..+|+.|||.
T Consensus 11 ~i~~~lG~~-i~~~~i~~~L~~Lg~~ 35 (75)
T d1jjcb2 11 YANRLLGTS-YPEAEQIAILKRLGCR 35 (75)
T ss_dssp HHHHHHTCC-CCHHHHHHHHHHTTCE
T ss_pred HHHHHhCCC-CCHHHHHHHHHHcCCc
Confidence 345667776 9999999999999996
No 9
>d2fr5a1 c.97.1.1 (A:11-146) mono-domain cytidine deaminase {Mouse (Mus musculus) [TaxId: 10090]}
Probab=13.47 E-value=53 Score=27.25 Aligned_cols=100 Identities=13% Similarity=0.238 Sum_probs=54.5
Q ss_pred cEEEeecccccccccccccC-----C-CCHHHHHHHHHHHhhhccccccCCCchhhhHHhhhcCCCCCCChHHH-HHHHH
Q 008884 325 YMALHLRFEKGMVGLSFCDF-----V-GTREEKAKMAEYRKKEWPRRYKNGSHLWQLALQKRKEGRCPLEPGEV-AVILR 397 (550)
Q Consensus 325 fiAlHLRfE~DMlAfSgC~~-----~-g~~~E~~eL~~~R~~~W~~k~~~~~~~~~~~~~~R~~G~CPLtPeEv-gl~Lr 397 (550)
-|+-=++.+ |=-.|+||.- + +.-+|+-.+.++-...-+ +++. . .......+. +++|=-. --+|.
T Consensus 27 ~VGAa~~~~-dG~i~~G~NvEnasy~~~iCAEr~Ai~~a~~~g~~-~~~~-~-----~~~~~~~~~-~~~PCG~CRQ~l~ 97 (136)
T d2fr5a1 27 PVGAALLTG-DGRIFSGCNIENACYPLGVCAERTAIQKAISEGYK-DFRA-I-----AISSDLQEE-FISPCGACRQVMR 97 (136)
T ss_dssp CEEEEEEET-TSCEEEEECBCCSSGGGCBCHHHHHHHHHHHTTCC-CEEE-E-----EEEESCSSS-CCCCCHHHHHHHH
T ss_pred cEEEEEEeC-CCCEEEEEeecccccccccchhheeeeeeeccCCc-cEEE-E-----EeecccCCC-CCCcchhhhHHHH
Confidence 366666766 4445666652 1 234677777665422111 1110 0 000011111 2344322 24555
Q ss_pred HhCCCCCcEEEEEeccccCcccchhhHHHhCCCcccccccC
Q 008884 398 AMGYPKETQIYVASGQVYGGQNRMAPLRNMFPNLVTKEELA 438 (550)
Q Consensus 398 ALGf~~~T~IYlAsGeiyGG~~~l~pLr~~FPnl~tKe~L~ 438 (550)
-+ ..++.||+...+ |+.....|+++.|.-+++++|=
T Consensus 98 E~--~~~~~i~~~~~~---~~~~~~tl~eLLP~~F~~~~L~ 133 (136)
T d2fr5a1 98 EF--GTDWAVYMTKPD---GTFVVRTVQELLPASFGPEDLQ 133 (136)
T ss_dssp HT--CSSCEEEEECTT---SCEEEEEHHHHSTTCCCGGGGT
T ss_pred hh--CCCceEEEECCC---CCEEEeEHHHhCcCCCChHHhC
Confidence 54 578899998765 4556668999999999998874
No 10
>d1vjna_ d.157.1.4 (A:) Hypothetical protein TM0207 {Thermotoga maritima [TaxId: 2336]}
Probab=12.51 E-value=94 Score=26.70 Aligned_cols=55 Identities=25% Similarity=0.466 Sum_probs=34.6
Q ss_pred eEEEeecCChhhHHHHHHHHHHHHHHhCceEeeccccCCccccCCCCCCccccHHHHHHHhcc
Q 008884 154 YIFIHAEGGLNQQRIAICNAVAVAKIMNATLILPVLKQDQIWKDQTKFEDIFDVDHFIDYLKD 216 (550)
Q Consensus 154 Yl~V~~nGGLNqqR~~IcDaVaVAriLNATLVlP~L~~~s~WkD~S~F~dIFDvdhFI~sL~~ 216 (550)
.+++.+.|.. ...--+|+.+|+.|++-.|||-= |+.....| ++=.+|.|++.++.
T Consensus 130 va~lpigg~~---~m~~~ea~~~~~~l~pk~viP~H----~~t~~~~~-~~~~~~~f~~~~~~ 184 (209)
T d1vjna_ 130 VLLVPVGGTY---TIGPKEAKEVADLLNAKVIIPMH----YKTKYLKF-NLLPVDDFLKLFDS 184 (209)
T ss_dssp EEEEECCSSS---SCCHHHHHHHHHHTTCSEEEEES----CCCSSCCT-TCCCTHHHHTTSSC
T ss_pred EEEEecCCcc---ccCHHHHHHHHHHhCCCEEEEec----cCCccccc-CcCCHHHHHHHhhh
Confidence 4555544432 13456889999999999999952 32222233 34557888887663
Done!