Query 008885
Match_columns 550
No_of_seqs 308 out of 1476
Neff 7.1
Searched_HMMs 46136
Date Thu Mar 28 17:48:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008885.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008885hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2476 Uncharacterized conser 100.0 6E-104 1E-108 807.1 40.7 459 1-547 1-471 (528)
2 cd00844 MPP_Dbr1_N Dbr1 RNA la 100.0 1.1E-44 2.3E-49 364.0 24.1 223 6-241 1-261 (262)
3 cd07380 MPP_CWF19_N Schizosacc 100.0 1.7E-40 3.7E-45 306.4 14.4 145 7-233 1-150 (150)
4 KOG2863 RNA lariat debranching 100.0 9.4E-40 2E-44 326.2 12.6 227 4-247 1-264 (456)
5 KOG2477 Uncharacterized conser 100.0 1E-39 2.2E-44 336.7 12.9 164 386-549 404-573 (628)
6 PF04677 CwfJ_C_1: Protein sim 100.0 5.7E-38 1.2E-42 279.1 13.2 116 384-499 6-121 (121)
7 COG2129 Predicted phosphoester 99.9 6.3E-22 1.4E-26 190.2 21.8 198 1-234 1-205 (226)
8 cd07388 MPP_Tt1561 Thermus the 99.9 1E-21 2.2E-26 193.3 21.9 195 3-235 4-208 (224)
9 cd07392 MPP_PAE1087 Pyrobaculu 99.9 4.3E-20 9.4E-25 175.8 21.1 187 6-231 1-188 (188)
10 PF14582 Metallophos_3: Metall 99.6 1.4E-14 3E-19 139.3 17.9 200 4-235 6-237 (255)
11 PRK10687 purine nucleoside pho 99.6 1.4E-15 3.1E-20 135.4 10.1 100 389-488 3-109 (119)
12 COG0537 Hit Diadenosine tetrap 99.5 3E-14 6.5E-19 130.3 10.7 99 390-488 2-106 (138)
13 cd01275 FHIT FHIT (fragile his 99.5 8.4E-14 1.8E-18 125.4 11.4 99 391-489 1-106 (126)
14 cd01277 HINT_subgroup HINT (hi 99.5 1.6E-13 3.5E-18 118.7 11.1 97 390-486 1-103 (103)
15 cd07397 MPP_DevT Myxococcus xa 99.5 2.3E-12 4.9E-17 127.6 18.7 203 4-233 1-234 (238)
16 cd07379 MPP_239FB Homo sapiens 99.4 2.4E-12 5.3E-17 117.0 14.0 133 5-231 1-135 (135)
17 cd01276 PKCI_related Protein K 99.4 9.8E-13 2.1E-17 114.2 10.5 96 390-485 1-103 (104)
18 PF01230 HIT: HIT domain; Int 99.3 3.8E-12 8.2E-17 109.4 9.3 85 403-487 6-96 (98)
19 TIGR03729 acc_ester putative p 99.3 2.1E-11 4.6E-16 121.6 15.0 200 5-231 1-236 (239)
20 KOG3947 Phosphoesterases [Gene 99.3 1.4E-11 2.9E-16 121.3 12.2 204 4-233 62-281 (305)
21 cd07402 MPP_GpdQ Enterobacter 99.3 1.8E-10 3.9E-15 114.3 19.3 197 5-235 1-212 (240)
22 cd01278 aprataxin_related apra 99.3 2E-11 4.4E-16 106.0 10.6 95 390-484 1-103 (104)
23 cd00468 HIT_like HIT family: H 99.2 4.9E-11 1.1E-15 99.4 8.8 80 406-485 1-86 (86)
24 PF00149 Metallophos: Calcineu 99.2 6.8E-11 1.5E-15 107.3 9.4 192 4-210 1-200 (200)
25 KOG3275 Zinc-binding protein o 99.2 8.7E-11 1.9E-15 101.0 9.1 97 388-485 15-118 (127)
26 cd07393 MPP_DR1119 Deinococcus 99.1 5.1E-09 1.1E-13 104.2 18.1 177 6-217 1-212 (232)
27 PF12850 Metallophos_2: Calcin 99.1 9.5E-10 2.1E-14 101.3 11.5 141 4-237 1-141 (156)
28 cd07404 MPP_MS158 Microscilla 99.1 1.4E-09 3.1E-14 102.1 12.0 151 6-212 1-151 (166)
29 TIGR00040 yfcE phosphoesterase 99.0 3.8E-09 8.2E-14 98.6 14.3 63 4-76 1-63 (158)
30 cd07403 MPP_TTHA0053 Thermus t 99.0 2.7E-09 5.8E-14 96.5 12.6 68 155-233 57-124 (129)
31 PRK11148 cyclic 3',5'-adenosin 99.0 3.3E-08 7.2E-13 100.7 20.1 195 3-234 14-224 (275)
32 TIGR00209 galT_1 galactose-1-p 98.9 2.7E-09 5.9E-14 111.9 9.2 99 389-487 194-303 (347)
33 cd00841 MPP_YfcE Escherichia c 98.9 2.6E-08 5.6E-13 92.3 14.3 133 5-236 1-133 (155)
34 PRK11720 galactose-1-phosphate 98.9 3.8E-09 8.2E-14 110.8 9.1 99 389-487 194-303 (346)
35 cd00838 MPP_superfamily metall 98.9 2.5E-08 5.4E-13 87.5 11.7 131 7-231 1-131 (131)
36 PRK09453 phosphodiesterase; Pr 98.8 5.4E-08 1.2E-12 93.0 14.2 68 4-76 1-75 (182)
37 cd07385 MPP_YkuE_C Bacillus su 98.8 7.4E-08 1.6E-12 94.5 15.4 163 3-216 1-172 (223)
38 cd07396 MPP_Nbla03831 Homo sap 98.8 1.9E-07 4E-12 94.9 17.8 196 4-235 1-246 (267)
39 PHA03008 hypothetical protein; 98.8 8.7E-09 1.9E-13 96.5 6.8 116 101-235 98-225 (234)
40 KOG3379 Diadenosine polyphosph 98.8 5.3E-08 1.1E-12 86.3 10.1 88 400-487 14-107 (150)
41 PLN02643 ADP-glucose phosphory 98.7 5.2E-08 1.1E-12 101.9 10.1 95 389-486 198-302 (336)
42 cd00608 GalT Galactose-1-phosp 98.7 3.5E-08 7.6E-13 103.2 8.5 100 389-488 184-296 (329)
43 PF11969 DcpS_C: Scavenger mRN 98.7 2.2E-08 4.7E-13 89.0 5.6 100 390-490 1-108 (116)
44 COG0622 Predicted phosphoester 98.7 6.4E-07 1.4E-11 84.9 15.3 140 3-237 1-141 (172)
45 cd07400 MPP_YydB Bacillus subt 98.7 4.5E-07 9.9E-12 82.8 13.8 108 32-231 35-143 (144)
46 cd07394 MPP_Vps29 Homo sapiens 98.6 9.3E-07 2E-11 84.5 15.5 134 5-235 1-136 (178)
47 cd00839 MPP_PAPs purple acid p 98.6 5.5E-07 1.2E-11 92.2 13.5 215 3-235 4-239 (294)
48 PRK05340 UDP-2,3-diacylglucosa 98.6 1.2E-06 2.5E-11 87.7 15.4 204 4-235 1-221 (241)
49 cd00840 MPP_Mre11_N Mre11 nucl 98.6 1.9E-07 4.2E-12 91.1 9.3 190 5-233 1-217 (223)
50 cd07395 MPP_CSTP1 Homo sapiens 98.5 5E-06 1.1E-10 83.9 18.7 186 3-211 4-219 (262)
51 cd07378 MPP_ACP5 Homo sapiens 98.5 3.5E-06 7.6E-11 85.6 15.9 206 4-235 1-233 (277)
52 PRK11340 phosphodiesterase Yae 98.5 4.3E-06 9.4E-11 85.2 15.6 71 3-76 49-124 (271)
53 TIGR01854 lipid_A_lpxH UDP-2,3 98.4 1.6E-05 3.5E-10 79.0 16.4 102 6-126 1-114 (231)
54 cd08163 MPP_Cdc1 Saccharomyces 98.3 3.4E-05 7.4E-10 78.0 18.3 161 32-212 45-230 (257)
55 TIGR00583 mre11 DNA repair pro 98.3 3.5E-06 7.5E-11 90.3 10.8 75 3-78 3-124 (405)
56 PHA02239 putative protein phos 98.3 2.1E-06 4.6E-11 85.6 8.1 78 4-84 1-78 (235)
57 cd07383 MPP_Dcr2 Saccharomyces 98.2 2.1E-05 4.6E-10 76.1 13.6 72 3-75 2-87 (199)
58 cd07401 MPP_TMEM62_N Homo sapi 98.2 6.9E-05 1.5E-09 75.7 17.6 191 6-220 2-220 (256)
59 PLN02533 probable purple acid 98.2 7.1E-05 1.5E-09 81.1 18.5 208 3-236 139-361 (427)
60 PRK00166 apaH diadenosine tetr 98.2 3.3E-06 7.2E-11 86.1 7.4 68 4-76 1-68 (275)
61 PHA02546 47 endonuclease subun 98.2 3.2E-05 6.8E-10 81.5 14.9 139 4-162 1-155 (340)
62 PRK04036 DNA polymerase II sma 98.2 2.4E-05 5.2E-10 86.5 14.4 117 3-127 243-388 (504)
63 cd07399 MPP_YvnB Bacillus subt 98.2 2.4E-05 5.2E-10 76.9 12.5 151 5-212 2-163 (214)
64 cd07386 MPP_DNA_pol_II_small_a 98.1 7.7E-06 1.7E-10 81.8 8.4 108 7-127 2-139 (243)
65 cd07410 MPP_CpdB_N Escherichia 98.1 0.00026 5.6E-09 72.2 19.3 205 4-248 1-257 (277)
66 cd07423 MPP_PrpE Bacillus subt 97.9 1.5E-05 3.3E-10 79.3 6.6 77 4-84 1-85 (234)
67 TIGR00619 sbcd exonuclease Sbc 97.9 2.4E-05 5.2E-10 78.9 8.0 74 4-78 1-89 (253)
68 cd07424 MPP_PrpA_PrpB PrpA and 97.9 2.1E-05 4.6E-10 76.7 7.4 66 4-76 1-66 (207)
69 cd00845 MPP_UshA_N_like Escher 97.8 0.0014 3E-08 65.6 18.9 201 4-250 1-236 (252)
70 KOG4359 Protein kinase C inhib 97.8 3.9E-05 8.4E-10 68.4 5.7 104 388-492 30-142 (166)
71 TIGR00668 apaH bis(5'-nucleosy 97.8 4.7E-05 1E-09 77.4 6.7 68 4-76 1-68 (279)
72 PRK11439 pphA serine/threonine 97.8 4.5E-05 9.8E-10 75.2 6.4 72 4-84 17-88 (218)
73 PRK10966 exonuclease subunit S 97.8 7.5E-05 1.6E-09 80.4 8.5 75 4-79 1-89 (407)
74 cd07421 MPP_Rhilphs Rhilph pho 97.7 0.00011 2.3E-09 75.1 8.1 71 5-76 3-79 (304)
75 cd07422 MPP_ApaH Escherichia c 97.7 6.9E-05 1.5E-09 75.7 6.7 66 6-76 1-66 (257)
76 PRK13625 bis(5'-nucleosyl)-tet 97.7 7.8E-05 1.7E-09 74.9 6.6 77 4-84 1-84 (245)
77 COG0420 SbcD DNA repair exonuc 97.7 0.00011 2.5E-09 78.6 8.3 74 4-78 1-89 (390)
78 PF04676 CwfJ_C_2: Protein sim 97.7 4.1E-05 8.8E-10 66.0 3.8 42 508-549 1-46 (98)
79 cd07411 MPP_SoxB_N Thermus the 97.6 0.0076 1.6E-07 61.1 20.8 199 4-249 1-249 (264)
80 PRK09968 serine/threonine-spec 97.6 0.00011 2.5E-09 72.4 6.7 71 5-84 16-86 (218)
81 cd07412 MPP_YhcR_N Bacillus su 97.6 0.012 2.6E-07 60.5 21.6 219 4-249 1-271 (288)
82 COG1768 Predicted phosphohydro 97.6 0.0017 3.6E-08 61.2 13.5 149 26-209 37-198 (230)
83 COG1409 Icc Predicted phosphoh 97.6 0.0018 3.8E-08 65.6 15.1 73 4-79 1-80 (301)
84 cd07406 MPP_CG11883_N Drosophi 97.6 0.01 2.2E-07 60.0 20.4 112 4-128 1-138 (257)
85 cd07413 MPP_PA3087 Pseudomonas 97.5 0.00018 3.9E-09 71.2 7.0 68 7-76 2-75 (222)
86 cd00144 MPP_PPP_family phospho 97.5 0.00016 3.4E-09 71.1 6.5 67 7-76 1-67 (225)
87 cd07425 MPP_Shelphs Shewanella 97.5 0.0002 4.4E-09 70.1 6.5 69 7-76 1-79 (208)
88 cd07408 MPP_SA0022_N Staphyloc 97.3 0.0056 1.2E-07 61.8 14.9 111 4-127 1-135 (257)
89 PRK09419 bifunctional 2',3'-cy 97.3 0.011 2.5E-07 71.9 20.1 204 3-235 660-900 (1163)
90 cd07405 MPP_UshA_N Escherichia 97.3 0.034 7.4E-07 57.1 20.5 112 4-127 1-138 (285)
91 TIGR01530 nadN NAD pyrophospha 97.2 0.011 2.3E-07 66.5 17.0 36 416-451 409-445 (550)
92 cd07398 MPP_YbbF-LpxH Escheric 97.2 0.0015 3.2E-08 63.6 8.9 42 185-233 176-217 (217)
93 cd08166 MPP_Cdc1_like_1 unchar 97.2 0.0038 8.3E-08 60.4 11.2 35 157-209 112-146 (195)
94 cd07409 MPP_CD73_N CD73 ecto-5 97.2 0.031 6.8E-07 57.2 18.6 111 4-127 1-149 (281)
95 PTZ00422 glideosome-associated 97.0 0.037 8E-07 59.1 18.0 213 3-234 26-277 (394)
96 cd07420 MPP_RdgC Drosophila me 96.9 0.0016 3.5E-08 67.8 6.5 73 4-77 51-123 (321)
97 smart00156 PP2Ac Protein phosp 96.9 0.0021 4.6E-08 65.6 7.2 72 4-77 28-99 (271)
98 TIGR00024 SbcD_rel_arch putati 96.9 0.0022 4.8E-08 63.6 7.1 68 5-76 16-101 (225)
99 COG0737 UshA 5'-nucleotidase/2 96.8 0.036 7.8E-07 61.7 16.5 213 3-249 26-279 (517)
100 cd08162 MPP_PhoA_N Synechococc 96.8 0.054 1.2E-06 56.4 16.3 41 4-44 1-50 (313)
101 cd07416 MPP_PP2B PP2B, metallo 96.7 0.0036 7.8E-08 64.9 7.3 72 4-77 43-114 (305)
102 cd07390 MPP_AQ1575 Aquifex aeo 96.7 0.0047 1E-07 58.2 7.2 65 7-76 2-81 (168)
103 cd07407 MPP_YHR202W_N Saccharo 96.6 0.022 4.7E-07 58.5 12.0 117 3-127 5-156 (282)
104 PRK09558 ushA bifunctional UDP 96.6 0.052 1.1E-06 61.0 15.9 113 3-126 34-172 (551)
105 cd07414 MPP_PP1_PPKL PP1, PPKL 96.6 0.0041 8.9E-08 64.1 6.5 203 4-234 50-267 (293)
106 cd07415 MPP_PP2A_PP4_PP6 PP2A, 96.6 0.0043 9.3E-08 63.7 6.4 205 4-234 42-259 (285)
107 PTZ00239 serine/threonine prot 96.5 0.0051 1.1E-07 63.7 6.7 206 4-234 43-261 (303)
108 cd00842 MPP_ASMase acid sphing 96.5 0.12 2.6E-06 53.1 16.6 175 19-214 55-265 (296)
109 cd07417 MPP_PP5_C PP5, C-termi 96.5 0.0054 1.2E-07 63.9 6.6 211 4-234 60-278 (316)
110 PTZ00480 serine/threonine-prot 96.4 0.0067 1.5E-07 63.2 6.8 205 4-235 59-277 (320)
111 PTZ00244 serine/threonine-prot 96.4 0.0053 1.1E-07 63.3 5.9 206 5-235 53-270 (294)
112 cd07418 MPP_PP7 PP7, metalloph 96.3 0.0079 1.7E-07 63.9 6.9 73 4-77 66-138 (377)
113 TIGR03767 P_acnes_RR metalloph 96.3 0.13 2.8E-06 56.2 15.7 130 115-251 299-448 (496)
114 cd08165 MPP_MPPE1 human MPPE1 96.2 0.011 2.5E-07 55.1 6.5 44 32-75 38-87 (156)
115 cd07419 MPP_Bsu1_C Arabidopsis 96.0 0.016 3.5E-07 60.3 7.3 73 4-76 48-126 (311)
116 TIGR00282 metallophosphoestera 95.9 0.046 1E-06 55.6 9.6 70 4-79 1-73 (266)
117 COG1085 GalT Galactose-1-phosp 95.8 0.024 5.3E-07 59.0 7.5 97 389-485 185-291 (338)
118 cd07382 MPP_DR1281 Deinococcus 95.7 0.2 4.3E-06 50.7 13.4 109 5-126 1-115 (255)
119 cd07391 MPP_PF1019 Pyrococcus 95.7 0.022 4.7E-07 53.9 6.2 58 18-76 28-87 (172)
120 KOG3325 Membrane coat complex 95.6 0.12 2.7E-06 47.3 10.0 111 4-160 1-113 (183)
121 KOG2679 Purple (tartrate-resis 95.5 0.04 8.7E-07 55.3 7.4 206 3-232 43-272 (336)
122 KOG0371 Serine/threonine prote 95.2 0.035 7.7E-07 55.2 5.8 69 6-76 62-130 (319)
123 cd07384 MPP_Cdc1_like Saccharo 95.1 0.028 6E-07 53.3 4.5 57 19-76 33-99 (171)
124 KOG2310 DNA repair exonuclease 94.9 0.064 1.4E-06 58.4 7.0 75 3-79 13-135 (646)
125 PF02744 GalP_UDP_tr_C: Galact 94.7 0.056 1.2E-06 51.1 5.4 72 389-460 13-86 (166)
126 PRK09418 bifunctional 2',3'-cy 94.6 2 4.4E-05 50.2 18.8 41 3-44 39-95 (780)
127 PRK09419 bifunctional 2',3'-cy 94.2 2.5 5.4E-05 51.9 19.4 204 4-235 42-312 (1163)
128 KOG1378 Purple acid phosphatas 94.1 1.1 2.3E-05 48.6 14.0 189 3-213 147-346 (452)
129 COG4186 Predicted phosphoester 93.9 0.19 4.1E-06 46.6 6.8 70 1-76 1-85 (186)
130 KOG0373 Serine/threonine speci 93.7 0.15 3.3E-06 49.6 6.1 68 5-76 47-116 (306)
131 KOG0372 Serine/threonine speci 93.4 0.17 3.6E-06 50.2 6.1 67 6-76 45-113 (303)
132 COG2908 Uncharacterized protei 93.4 0.34 7.3E-06 48.1 8.1 79 32-126 29-114 (237)
133 KOG1595 CCCH-type Zn-finger pr 93.3 0.15 3.2E-06 55.6 5.9 103 231-371 187-293 (528)
134 COG1408 Predicted phosphohydro 93.2 0.22 4.7E-06 51.2 6.8 72 3-77 44-118 (284)
135 COG1407 Predicted ICC-like pho 92.1 0.42 9.1E-06 47.5 6.9 67 4-76 20-109 (235)
136 cd00608 GalT Galactose-1-phosp 91.5 1.3 2.7E-05 46.6 10.1 75 426-500 96-182 (329)
137 cd08164 MPP_Ted1 Saccharomyces 91.3 0.54 1.2E-05 45.5 6.6 46 31-76 43-110 (193)
138 TIGR03768 RPA4764 metallophosp 91.3 0.44 9.6E-06 51.8 6.5 60 16-76 84-169 (492)
139 KOG0374 Serine/threonine speci 91.2 0.25 5.4E-06 51.9 4.5 208 5-235 60-279 (331)
140 KOG2958 Galactose-1-phosphate 91.1 0.39 8.5E-06 48.6 5.5 62 399-460 211-272 (354)
141 cd07381 MPP_CapA CapA and rela 90.4 20 0.00043 35.5 17.9 104 14-128 22-141 (239)
142 smart00854 PGA_cap Bacterial c 89.7 23 0.00049 35.1 18.5 189 5-234 1-236 (239)
143 COG4360 APA2 ATP adenylyltrans 89.4 0.54 1.2E-05 46.4 4.8 76 405-488 86-165 (298)
144 TIGR01390 CycNucDiestase 2',3' 89.1 2.8 6.1E-05 47.9 11.1 113 3-127 2-160 (626)
145 PLN02643 ADP-glucose phosphory 88.7 7.2 0.00016 41.1 13.0 74 427-500 111-196 (336)
146 KOG3662 Cell division control 88.6 1.5 3.2E-05 47.1 7.8 75 3-77 48-144 (410)
147 PRK09420 cpdB bifunctional 2', 88.6 3.4 7.4E-05 47.5 11.3 112 3-126 25-182 (649)
148 PRK11907 bifunctional 2',3'-cy 87.8 3.1 6.7E-05 48.9 10.4 112 3-126 115-273 (814)
149 COG1692 Calcineurin-like phosp 84.5 3.6 7.9E-05 41.1 7.5 64 4-76 1-70 (266)
150 cd07387 MPP_PolD2_C PolD2 (DNA 84.1 5 0.00011 40.7 8.6 184 32-248 42-248 (257)
151 COG1085 GalT Galactose-1-phosp 83.7 5.6 0.00012 41.8 8.9 99 388-488 39-165 (338)
152 PF04042 DNA_pol_E_B: DNA poly 82.3 3.6 7.8E-05 39.8 6.6 114 6-126 1-137 (209)
153 KOG0375 Serine-threonine phosp 78.9 2.5 5.4E-05 44.2 4.2 65 5-76 89-158 (517)
154 PLN03103 GDP-L-galactose-hexos 78.8 4.4 9.5E-05 43.5 6.2 70 410-487 169-243 (403)
155 KOG1432 Predicted DNA repair e 78.7 6.2 0.00013 41.3 7.0 75 3-78 53-148 (379)
156 PF05011 DBR1: Lariat debranch 77.8 2.1 4.7E-05 39.5 3.2 30 221-252 6-35 (145)
157 COG1311 HYS2 Archaeal DNA poly 75.8 15 0.00032 40.3 9.2 208 3-250 225-463 (481)
158 PRK11720 galactose-1-phosphate 75.3 26 0.00056 37.1 10.9 61 426-487 108-173 (346)
159 PF00642 zf-CCCH: Zinc finger 67.2 1.8 3.9E-05 28.0 -0.0 23 315-337 5-27 (27)
160 PF09587 PGA_cap: Bacterial ca 65.6 1.5E+02 0.0032 29.5 17.0 105 5-129 1-140 (250)
161 KOG0377 Protein serine/threoni 64.0 2 4.2E-05 46.1 -0.4 69 5-77 166-237 (631)
162 TIGR00209 galT_1 galactose-1-p 63.2 49 0.0011 35.1 9.9 109 389-500 50-192 (347)
163 PF13483 Lactamase_B_3: Beta-l 61.2 32 0.00069 31.7 7.3 62 114-206 102-163 (163)
164 KOG0562 Predicted hydrolase (H 58.5 10 0.00022 35.6 3.2 76 410-486 23-105 (184)
165 smart00356 ZnF_C3H1 zinc finge 56.2 8.2 0.00018 24.2 1.6 21 315-336 6-26 (27)
166 PF10686 DUF2493: Protein of u 56.1 30 0.00065 27.9 5.2 38 3-42 3-41 (71)
167 PF01076 Mob_Pre: Plasmid reco 52.0 52 0.0011 31.8 7.2 54 445-498 97-153 (196)
168 PF12239 DUF3605: Protein of u 51.6 72 0.0016 29.9 7.8 69 412-481 73-155 (158)
169 KOG2720 Predicted hydrolase (H 49.7 14 0.00029 38.7 2.8 70 414-489 170-242 (431)
170 PF13277 YmdB: YmdB-like prote 47.7 41 0.0009 33.9 5.8 70 7-85 1-77 (253)
171 PTZ00235 DNA polymerase epsilo 36.8 1.3E+02 0.0029 31.0 7.7 42 3-44 27-75 (291)
172 KOG3770 Acid sphingomyelinase 36.5 98 0.0021 34.9 7.1 63 15-78 193-264 (577)
173 KOG3818 DNA polymerase epsilon 35.5 1.5E+02 0.0032 32.4 7.9 42 4-45 283-326 (525)
174 COG5082 AIR1 Arginine methyltr 33.4 71 0.0015 30.8 4.7 31 309-340 56-90 (190)
175 KOG1677 CCCH-type Zn-finger pr 31.9 40 0.00086 35.1 3.1 59 314-372 133-204 (332)
176 TIGR01239 galT_2 galactose-1-p 31.4 67 0.0015 35.3 4.7 75 388-464 168-254 (489)
177 TIGR00672 cdh CDP-diacylglycer 29.3 1.8E+02 0.0038 29.5 6.9 97 412-513 62-168 (250)
178 KOG1747 Protein tyrosine kinas 28.8 1.2E+02 0.0026 31.4 5.7 49 187-246 217-273 (342)
179 PRK05471 CDP-diacylglycerol py 27.9 2E+02 0.0042 29.2 6.9 97 412-513 63-169 (252)
180 PRK05270 galactose-1-phosphate 24.9 1.1E+02 0.0024 33.7 5.0 72 388-461 171-254 (493)
181 PHA03073 late transcription fa 22.9 1.8E+02 0.004 26.7 5.1 50 429-479 94-144 (150)
182 KOG3969 Uncharacterized conser 20.4 3.7E+02 0.0081 27.6 7.2 90 400-490 157-260 (310)
No 1
>KOG2476 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=6e-104 Score=807.08 Aligned_cols=459 Identities=43% Similarity=0.746 Sum_probs=386.8
Q ss_pred CCC--CEEEEEcCCCCChHHHHHHHHHHhhhcCCCcEEEEecCCCCCChhhHHHHHHHhcccCCCCccEEEEecCCCChH
Q 008885 1 MSP--PRILLCGDVLGRLNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSSELLDEFMNYVEGRSEIPIPTYFIGDYGVGAA 78 (550)
Q Consensus 1 M~~--~KILv~GDvhG~~~~l~~kv~~l~~k~GpfD~li~~GDff~~~~~~~~~~~~~l~g~~~~p~ptyfv~GNhe~~~ 78 (550)
|+. .|||||||+.|+|+.+|++|+++++|+||||++||+|+||+. .....+|.+|.+|.+++|+||||.++|...+.
T Consensus 1 Ma~~~~kILv~Gd~~Gr~~eli~rI~~v~Kk~GpFd~liCvGnfF~~-~~~~~e~~~ykng~~~vPiptY~~g~~~~~~~ 79 (528)
T KOG2476|consen 1 MAQADAKILVCGDVEGRFDELIKRIQKVNKKSGPFDLLICVGNFFGH-DTQNAEVEKYKNGTKKVPIPTYFLGDNANETE 79 (528)
T ss_pred CCCCCceEEEEcCccccHHHHHHHHHHHhhcCCCceEEEEecccCCC-ccchhHHHHHhcCCccCceeEEEecCCCCccc
Confidence 773 599999999999999999999999999999999999999996 33466899999999999999999999986555
Q ss_pred HHHHHhhccccccCcccCCceecCcEEEcCCCCeEEE-cCeEEEEEeCccCCCCCCCCCCCHHHHHHHHH---hhcCCCC
Q 008885 79 KVLLAASKNSANQGFKMDGFKVTDNLFWLKGSGNFTL-HGLSVAYLSGRQSSEGQQFGTYSQDDVDALRA---LAEEPGI 154 (550)
Q Consensus 79 ~~l~~l~~~~~~~~~~~~g~ei~~Nl~~Lg~~gv~~i-~GlrIa~lgG~~~~~~~~~~~~te~di~~L~~---l~~~~~~ 154 (550)
.++.. .+|.|||+||+|||++|++++ +|++||||||.++..... ..|+..|+++|+. ..+..++
T Consensus 80 ky~~n-----------~~g~Ei~~Nlt~Lg~~G~~~l~sGl~IaYLsG~e~~~~~~-~~fs~~dv~~l~~~~~~~~~~~g 147 (528)
T KOG2476|consen 80 KYFEN-----------SDGKEIAENLTYLGRKGTYKLASGLTIAYLSGPESSEKGE-SKFSQADVDELRHRLDTQKEFKG 147 (528)
T ss_pred eeccc-----------CCCcccccceeeecccceEeecCCcEEEEeeccccccccc-cccCHHHHHHHhcccccccccCC
Confidence 55542 357899999999999999986 599999999998765442 3789999999883 3345689
Q ss_pred ccEEEeCCCCcccccc-ccccccccccCCCCCCcHHHHHHHHHhCCCEEEEccCCCccccccccCC-----CCcceeEEE
Q 008885 155 VDLFLTNEWPSGVTNK-AAASDMLVGISDSSNTDSTVSELVAEIKPRYHIAGSKGVFYAREPYSNV-----DAVHVTRFL 228 (550)
Q Consensus 155 vDILLTh~wP~gi~~~-~~~~~~~~~~~~~~~Gs~~i~~l~~~lkPRYhf~Gh~~~f~er~Py~~~-----~~~~~TRFI 228 (550)
||||||++||.+|+.. +.. + +.....||..|++|+.++||||||+|..++||||+||+|+ +..++||||
T Consensus 148 vDILlTseWP~~v~e~~ss~---~--~~~~~~gs~lvs~La~~lkPRYHFa~~~~v~YErePyrn~~~~~~~~~h~TRFI 222 (528)
T KOG2476|consen 148 VDILLTSEWPADVQERNSSL---P--ESKRLCGSELVSELAAELKPRYHFAGSDGVFYEREPYRNHAALNEEAGHVTRFI 222 (528)
T ss_pred ccEEEecCCcchhhhccccC---c--cccCCcchHHHHHHHHhcCcceEeccCCCceeecccccchhhhcccccceeeee
Confidence 9999999999999874 221 1 1124689999999999999999999999999999999996 478999999
Q ss_pred EcCCCCCcccceeEEEeccCCCCCCchhcccCCCCCCCCCCCccccCCCCcccccCCCCCCCCCCcccccccccccccCC
Q 008885 229 GLAPVGNKEKQKFIHALSPTPAATMSAADISMKTPNTTLSPYTFLDQGSHSKEAAKRPSDSVSDSQYWRYDVSQKRQKHG 308 (550)
Q Consensus 229 ~La~~g~~~K~Kw~yAf~i~p~~~~~~~~l~~~p~~~T~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (550)
+||++||++|+||+|||||.|+.+|.+.+|.+.|+|+|+|||.... .. -...+|..++ ++.+|+||+++++.+
T Consensus 223 ~LA~vGN~ek~K~lYAfs~~P~~~~~~~el~a~Ppn~~~~Py~~~d--~~-~qs~kr~~~s--~~~q~ffd~~~~~~~-- 295 (528)
T KOG2476|consen 223 ALAKVGNPEKQKWLYAFSLKPMGTMELAELTAKPPNLIPNPYNLED--VA-IQSNKRPNSS--ESTQYFFDMDKQQLS-- 295 (528)
T ss_pred ehhhcCCccccceeeeecccccccchhhhcccCCCccCCCCcchhh--hh-hhhccCCCCC--ccceeeeccCccccc--
Confidence 9999999999999999999999999999999999999999996211 01 1235555443 245556998633322
Q ss_pred CCCCCCcceeeeccCCCCCCCcccccCCchhhhhhccccchhhhcccccCCCCCccccCCcCCCccccccCCcccccCCC
Q 008885 309 GGDGDKMCFKFIYSGSCPRGEKCNFRHDTDAREQCLRGVCLDFIIKGKCEKGPECSYKHSLQNDDSQRTHRSENASANRS 388 (550)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (550)
+.+||++..+++. +++|. +.+.+
T Consensus 296 ------------------------------------------------~~~gr~~h~~~~~-----kgpR~----p~~~p 318 (528)
T KOG2476|consen 296 ------------------------------------------------KMNGRESHSDKSE-----KGPRK----PKIPP 318 (528)
T ss_pred ------------------------------------------------cCCcccccccccc-----cCCCC----CCCCC
Confidence 1223333222211 11111 23557
Q ss_pred CCCcccCCCCCCCcceEEEECCEEEEEecCCCCCCCeEEEEeccccCCCCCCCHHHHHHHHHHHHHHHHHHhhcCCceEE
Q 008885 389 KECWFCLSSPSVESHLIVSVGEYYYCALPKGPLVEDHVLVIPVEHVPNTISTSPECEKELGRFQNSLMMYYKNQGKEAVF 468 (550)
Q Consensus 389 ~~C~FC~~~~~~~~hliis~g~~~yl~l~kgpl~~gH~lIiP~~H~~s~~~l~~~~~~Ei~~~~~~L~~~~~~~~~~~v~ 468 (550)
+.||||++||++|+||||+||++||++||||||+.||||||||+|++++..+++|+++||.+|+.+|++||+++|+.+||
T Consensus 319 g~CwFCLSnP~vEkHLIVsIG~~~YlAlaKGpLs~~HvlIipi~H~p~~~~ls~ev~~Ei~kykaal~~myk~~g~~~vv 398 (528)
T KOG2476|consen 319 GSCWFCLSNPNVEKHLIVSIGNHFYLALAKGPLSSDHVLIIPIEHIPSLVPLSAEVTQEINKYKAALRKMYKKQGKDAVV 398 (528)
T ss_pred CceEEEecCCChhhheEEEecceeEEeecCCCCCCCeEEEEEcccccccccCCHHHHHHHHHHHHHHHHHHHhcCCeEEE
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeecCCCcCeEEEEEeecCCCchHHHHHHHHHHHHHcCCccccccCCCCcchhhhhhhhcCCCCCeEEEEcCCCeeeee
Q 008885 469 FEWLSKRGTHANLQAVPIPTSKAAAVQDIFNLAAEKLGFKFLATKSSKSSDGRRSLRAQFDRNCSFFYVELPEGFGRLA 547 (550)
Q Consensus 469 ~E~~~~~~~H~hi~~vPvp~~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~pYf~ve~~~G~~~v~ 547 (550)
||+.+.++.|+|+|+||||+.....++..|..+|++.++|+.+.+... .|.+....+.|||+||||+|..+++
T Consensus 399 fE~~~~rs~Hlq~Qvipvpks~s~~ik~~F~~~A~eag~ef~t~~~~~------s~~~~~n~~l~yF~vELPdg~~L~h 471 (528)
T KOG2476|consen 399 FERQSYRSVHLQLQVIPVPKSSSRQIKSSFETAAEEAGLEFETYDSHS------SIKNQSNNGLPYFVVELPDGSILIH 471 (528)
T ss_pred EEeecccceeeEEEEEeccchhhhhhhHHHHHHHHHcCceEEecCcch------hhhhhhccCCceEEEECCCCCeehh
Confidence 996689999999999999999999999999999999999999887543 4677777889999999999998875
No 2
>cd00844 MPP_Dbr1_N Dbr1 RNA lariat debranching enzyme, N-terminal metallophosphatase domain. Dbr1 is an RNA lariat debranching enzyme that hydrolyzes 2'-5' phosphodiester bonds at the branch points of excised intron lariats. This alignment model represents the N-terminal metallophosphatase domain of Dbr1. This domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal s
Probab=100.00 E-value=1.1e-44 Score=363.97 Aligned_cols=223 Identities=26% Similarity=0.446 Sum_probs=178.6
Q ss_pred EEEEcCCCCChHHHHHHHHHHhhhcC-CCcEEEEecCCCCCCh-------------hhHHHHHHHhcccCCCCccEEEEe
Q 008885 6 ILLCGDVLGRLNQLFKRVQSVNKSAG-PFDAVLCVGQFFPDSS-------------ELLDEFMNYVEGRSEIPIPTYFIG 71 (550)
Q Consensus 6 ILv~GDvhG~~~~l~~kv~~l~~k~G-pfD~li~~GDff~~~~-------------~~~~~~~~~l~g~~~~p~ptyfv~ 71 (550)
|.|+||+||+|+.++++++.++++++ ++|+|||||||+.... ....+|.+|++|..++|+|||||+
T Consensus 1 i~v~Gd~HG~~~~~~~~~~~~~~~~~~~~D~lI~~GDf~~~~~~~d~~~~~~p~k~~~~~~f~~~~~g~~~~p~~t~fi~ 80 (262)
T cd00844 1 IAVEGCCHGELDKIYETLEKIEKKEGTKVDLLICCGDFQAVRNEADLKCMAVPPKYRKMGDFYKYYSGEKKAPILTIFIG 80 (262)
T ss_pred CEEEecCCccHHHHHHHHHHHHHhcCCCCcEEEEcCCCCCcCCcchhhhhccchhhhhhhhHHHHhcCCccCCeeEEEEC
Confidence 68999999999999999999998865 8999999999976421 124578899999999999999999
Q ss_pred cCCCChHHHHHHhhccccccCcccCCceecCcEEEcCCCCeEEEcCeEEEEEeCccCCCCC-----CCCCCCHHHHHHHH
Q 008885 72 DYGVGAAKVLLAASKNSANQGFKMDGFKVTDNLFWLKGSGNFTLHGLSVAYLSGRQSSEGQ-----QFGTYSQDDVDALR 146 (550)
Q Consensus 72 GNhe~~~~~l~~l~~~~~~~~~~~~g~ei~~Nl~~Lg~~gv~~i~GlrIa~lgG~~~~~~~-----~~~~~te~di~~L~ 146 (550)
||||+ .+++..+. .|+++++||+||+++++++++|+||+|+||++..... ...+|+++++.++.
T Consensus 81 GNHE~-~~~l~~l~----------~gg~v~~Ni~~Lg~~~v~~~~GlrIaGLsG~~~~~~~~~~~~~~~~~t~~~~rs~y 149 (262)
T cd00844 81 GNHEA-SNYLWELP----------YGGWVAPNIYYLGYAGVVNFGGLRIAGLSGIYKSHDYRKGHFERPPYSEDTKRSAY 149 (262)
T ss_pred CCCCC-HHHHHhhc----------CCCeecCcEEEecCCCEEEECCeEEEEecccccccccccccccCCCCCHHHHHHhh
Confidence 99997 45666554 3679999999999999999999999999998753321 13478888876533
Q ss_pred --------HhhcCCCCccEEEeCCCCcccccccccc-------ccccccCCCCCCcHHHHHHHHHhCCCEEEEccCCCcc
Q 008885 147 --------ALAEEPGIVDLFLTNEWPSGVTNKAAAS-------DMLVGISDSSNTDSTVSELVAEIKPRYHIAGSKGVFY 211 (550)
Q Consensus 147 --------~l~~~~~~vDILLTh~wP~gi~~~~~~~-------~~~~~~~~~~~Gs~~i~~l~~~lkPRYhf~Gh~~~f~ 211 (550)
++.....+|||||||+||.||.+.++.. .+..++...+.||+.+++|++.+|||||||||.|.+|
T Consensus 150 ~~r~~~~~kl~~~~~~vDIlLSHdWP~gI~~~~~~~~l~~~~~~~~~~~~~~~~Gs~~~~~ll~~lkPryhf~gH~H~~f 229 (262)
T cd00844 150 HVRNIEVFKLKQLKQPIDIFLSHDWPRGIYKHGDKKQLLRKKPFFRQDIESGTLGSPAAEELLKHLKPRYWFSAHLHVKF 229 (262)
T ss_pred hhhHHHHHHHHhcCCCCcEEEeCCCCcchhhccchHHhhhcCccchhcccccCCCCHHHHHHHHHhCCCEEEEecCCccc
Confidence 2222245899999999999998876632 1222223347899999999999999999999999988
Q ss_pred c-cccccCC---CCcceeEEEEcCCCCCccccee
Q 008885 212 A-REPYSNV---DAVHVTRFLGLAPVGNKEKQKF 241 (550)
Q Consensus 212 e-r~Py~~~---~~~~~TRFI~La~~g~~~K~Kw 241 (550)
| ++||+|. +..++|||||||++-+ +++|
T Consensus 230 ~~~~~~~~~~~~~~~~~TRFiaL~k~~~--~~~~ 261 (262)
T cd00844 230 AALVPHENKSPGNTNKETKFLALDKCLP--GRDF 261 (262)
T ss_pred ceecCCcccccCCCCcceEEEEcccccC--CCCC
Confidence 8 5699984 3578999999999977 4444
No 3
>cd07380 MPP_CWF19_N Schizosaccharomyces pombe CWF19 and related proteins, N-terminal metallophosphatase domain. CWF19 cell cycle control protein (also known as CWF19-like 1 (CWF19L1) in Homo sapiens), N-terminal metallophosphatase domain. CWF19 contains C-terminal domains similar to that found in the CwfJ cell cycle control protein. The metallophosphatase domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site
Probab=100.00 E-value=1.7e-40 Score=306.39 Aligned_cols=145 Identities=50% Similarity=0.933 Sum_probs=127.6
Q ss_pred EEEcCCCCChHHHHHHHHHHhhhcCCCcEEEEecCCCCCChhhHHHHHHHhcccCCCCccEEEEecCCCChHHHHHHhhc
Q 008885 7 LLCGDVLGRLNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSSELLDEFMNYVEGRSEIPIPTYFIGDYGVGAAKVLLAASK 86 (550)
Q Consensus 7 Lv~GDvhG~~~~l~~kv~~l~~k~GpfD~li~~GDff~~~~~~~~~~~~~l~g~~~~p~ptyfv~GNhe~~~~~l~~l~~ 86 (550)
||+||+||+++++|++++++++|+||||++|||||||+...+. ++|.+|++|+.++|+||||++|||+
T Consensus 1 LV~G~~~G~l~~~~~kv~~~~~k~gpFd~~ic~Gdff~~~~~~-~~~~~y~~g~~~~pipTyf~ggn~~----------- 68 (150)
T cd07380 1 LVCGDVNGRLKALFEKVNTINKKKGPFDALLCVGDFFGDDEDD-EELEAYKDGSKKVPIPTYFLGGNNP----------- 68 (150)
T ss_pred CeeecCCccHHHHHHHHHHHhcccCCeeEEEEecCccCCccch-hhHHHHhcCCccCCCCEEEECCCCC-----------
Confidence 7999999999999999999999999999999999999976543 6899999999999999999999851
Q ss_pred cccccCcccCCceecCcEEEcCCCCeEEEcCeEEEEEeCccCCCCCCCCCCCHHHHHHHHHhhcCCCCccEEEeCCCCcc
Q 008885 87 NSANQGFKMDGFKVTDNLFWLKGSGNFTLHGLSVAYLSGRQSSEGQQFGTYSQDDVDALRALAEEPGIVDLFLTNEWPSG 166 (550)
Q Consensus 87 ~~~~~~~~~~g~ei~~Nl~~Lg~~gv~~i~GlrIa~lgG~~~~~~~~~~~~te~di~~L~~l~~~~~~vDILLTh~wP~g 166 (550)
++||||||+||+|
T Consensus 69 -------------------------------------------------------------------~~DILlTh~wP~g 81 (150)
T cd07380 69 -------------------------------------------------------------------GVDILLTSEWPKG 81 (150)
T ss_pred -------------------------------------------------------------------CCCEEECCCCchh
Confidence 4899999999999
Q ss_pred ccccccccccccccCCCCCCcHHHHHHHHHhCCCEEEEccCCCccccccccCCC-----CcceeEEEEcCCC
Q 008885 167 VTNKAAASDMLVGISDSSNTDSTVSELVAEIKPRYHIAGSKGVFYAREPYSNVD-----AVHVTRFLGLAPV 233 (550)
Q Consensus 167 i~~~~~~~~~~~~~~~~~~Gs~~i~~l~~~lkPRYhf~Gh~~~f~er~Py~~~~-----~~~~TRFI~La~~ 233 (550)
|.+.++... .....+.||+.|++|++++|||||||||.+.||||+||+|+. ..++||||+||++
T Consensus 82 i~~~~~~~~---~~~~~~~GS~~i~~l~~~lkPrYhf~gh~~~fyer~Pf~~~~~~~~~~~~~TRFi~La~~ 150 (150)
T cd07380 82 ISKLSKVPF---EETLLICGSDLIAELAKKLKPRYHFAGLEGVFYEREPYRNDSVLEEKAEHVTRFIGLAPV 150 (150)
T ss_pred hhhhCCCcc---cccccCCCCHHHHHHHHHcCCCeEeecCCCceEeecCccCCCccccccCcceeEEeccCC
Confidence 976554211 111247899999999999999999999999999999999986 3789999999985
No 4
>KOG2863 consensus RNA lariat debranching enzyme [RNA processing and modification]
Probab=100.00 E-value=9.4e-40 Score=326.22 Aligned_cols=227 Identities=25% Similarity=0.441 Sum_probs=183.2
Q ss_pred CEEEEEcCCCCChHHHHHHHHHHhhhc-CCCcEEEEecCCCCC-------------ChhhHHHHHHHhcccCCCCccEEE
Q 008885 4 PRILLCGDVLGRLNQLFKRVQSVNKSA-GPFDAVLCVGQFFPD-------------SSELLDEFMNYVEGRSEIPIPTYF 69 (550)
Q Consensus 4 ~KILv~GDvhG~~~~l~~kv~~l~~k~-GpfD~li~~GDff~~-------------~~~~~~~~~~~l~g~~~~p~ptyf 69 (550)
|||.|-|++||.++.+++.+..++++. +|+|++||||||... .+..+.+|..|++|+.++|+||+|
T Consensus 1 MrIaVqGCcHG~Ld~iYkti~~~ek~~~tkVDLLlccGDFQavRn~~D~~siavPpKy~~m~~F~~YYsge~~APVlTIF 80 (456)
T KOG2863|consen 1 MRIAVQGCCHGELDNIYKTISLIEKRGNTKVDLLLCCGDFQAVRNEQDLKSIAVPPKYRRMGDFYKYYSGEIKAPVLTIF 80 (456)
T ss_pred CceeeecccchhHHHHHHHHHHHHHcCCCCccEEEEccchHhhcchhhcccccCCHHHHHHHHHHHHhCCcccCceeEEE
Confidence 799999999999999999999998874 599999999999753 234677899999999999999999
Q ss_pred EecCCCChHHHHHHhhccccccCcccCCceecCcEEEcCCCCeEEEcCeEEEEEeCccCCCC-----CCCCCCCHH----
Q 008885 70 IGDYGVGAAKVLLAASKNSANQGFKMDGFKVTDNLFWLKGSGNFTLHGLSVAYLSGRQSSEG-----QQFGTYSQD---- 140 (550)
Q Consensus 70 v~GNhe~~~~~l~~l~~~~~~~~~~~~g~ei~~Nl~~Lg~~gv~~i~GlrIa~lgG~~~~~~-----~~~~~~te~---- 140 (550)
|+||||. .+++.+|+ .|+|+++||+|||..||+.++|+||||+||++..-. ..+.+|+.+
T Consensus 81 IGGNHEA-snyL~eLp----------yGGwVApNIyYlG~agVv~~~gvRIggiSGI~k~~dy~kgh~E~ppyn~stiRs 149 (456)
T KOG2863|consen 81 IGGNHEA-SNYLQELP----------YGGWVAPNIYYLGYAGVVNFGGVRIGGISGIYKEHDYRKGHFEWPPYNNSTIRS 149 (456)
T ss_pred ecCchHH-HHHHHhcc----------cCceeccceEEeeecceEEECCEEEeeccchhhhhhcccCCCCCCCccchhhhh
Confidence 9999995 67888886 377999999999999999999999999999976321 113344333
Q ss_pred -------HHHHHHHhhcCCCCccEEEeCCCCccccccccc-------cccccccCCCCCCcHHHHHHHHHhCCCEEEEcc
Q 008885 141 -------DVDALRALAEEPGIVDLFLTNEWPSGVTNKAAA-------SDMLVGISDSSNTDSTVSELVAEIKPRYHIAGS 206 (550)
Q Consensus 141 -------di~~L~~l~~~~~~vDILLTh~wP~gi~~~~~~-------~~~~~~~~~~~~Gs~~i~~l~~~lkPRYhf~Gh 206 (550)
|+..|+.+ ..++||+|||+||.||...++. +++.++++....||+++.+|+++|||+|||++|
T Consensus 150 iYHvR~~dV~~Lkql---k~piDIfLSHDWP~GI~~yGd~~~LLr~KPFFrqeie~~~LGSp~~~eLL~~LkP~yWfsAH 226 (456)
T KOG2863|consen 150 IYHVRISDVAKLKQL---KHPIDIFLSHDWPRGIYYYGDKKQLLRLKPFFRQEIEEGKLGSPALEELLEDLKPQYWFSAH 226 (456)
T ss_pred hhhhhhhhhHHHHhh---cCcceEEeecCCCcchhhcCCHHHHHhcCcHHHHHHhcCCcCChHHHHHHHHhCcchhhhhh
Confidence 44455554 5899999999999999887764 234556666689999999999999999999999
Q ss_pred CCCccccccccCCCCcceeEEEEcCCCCCcccceeEEEecc
Q 008885 207 KGVFYAREPYSNVDAVHVTRFLGLAPVGNKEKQKFIHALSP 247 (550)
Q Consensus 207 ~~~f~er~Py~~~~~~~~TRFI~La~~g~~~K~Kw~yAf~i 247 (550)
.|+-|...-- +..+.++|.|++|+++-.. ++++.-+++
T Consensus 227 LH~KFaA~v~-H~~~~~~tkflaldKclp~--~~flqile~ 264 (456)
T KOG2863|consen 227 LHVKFAALVQ-HNKRSHVTKFLALDKCLPN--RNFLQILEI 264 (456)
T ss_pred HhhHHhhhhc-ccCcCCCcccccccccCCC--cchhhhccC
Confidence 9986664322 2236889999999999763 334444443
No 5
>KOG2477 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=1e-39 Score=336.75 Aligned_cols=164 Identities=22% Similarity=0.453 Sum_probs=150.9
Q ss_pred CCCCCCcccCCCCCCCcceEEEECCEEEEEecCC-CCCCCeEEEEeccccCCCCCCCHHHHHHHHHHHHHHHHHHhhcCC
Q 008885 386 NRSKECWFCLSSPSVESHLIVSVGEYYYCALPKG-PLVEDHVLVIPVEHVPNTISTSPECEKELGRFQNSLMMYYKNQGK 464 (550)
Q Consensus 386 ~~~~~C~FC~~~~~~~~hliis~g~~~yl~l~kg-pl~~gH~lIiP~~H~~s~~~l~~~~~~Ei~~~~~~L~~~~~~~~~ 464 (550)
...++|.||+.++..++|+|||+|..+||+||.. +|..|||+|||.+|.++..+||+++|+||++|+++|+.||++.+.
T Consensus 404 ~~lD~C~rCfds~klpkhlviSlg~~tYLsLp~~~gL~~gHciIvptqH~~~t~slDEdvWDEIrnfrKcL~~Mfas~n~ 483 (628)
T KOG2477|consen 404 HVLDTCPRCFDSEKLPKHLVISLGHRTYLSLPTQPGLAKGHCIIVPTQHRINTLSLDEDVWDEIRNFRKCLALMFASMNL 483 (628)
T ss_pred HHhhhchhhhcccccccceeEEeccceeEeccccCccccCceEEecccccccccccchHHHHHHHHHHHHHHHHHHhcCC
Confidence 3578999999999999999999999999999995 699999999999999999999999999999999999999999999
Q ss_pred ceEEEeec--CCCcCeEEEEEeecCCCchHHHHHHHHHHHHHcCCccccccC-CCCcchhhhhhhhcCCCCCeEEEEc--
Q 008885 465 EAVFFEWL--SKRGTHANLQAVPIPTSKAAAVQDIFNLAAEKLGFKFLATKS-SKSSDGRRSLRAQFDRNCSFFYVEL-- 539 (550)
Q Consensus 465 ~~v~~E~~--~~~~~H~hi~~vPvp~~~~~~~~~~F~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~i~~~~pYf~ve~-- 539 (550)
+|||||.+ -++.+|+-|||||||.+++++++.||++|+.+++.||++++. ..+++.+++||.+||+|+|||||+|
T Consensus 484 dviFyE~a~~l~rrpH~~IeCIPvpqeig~map~YFKkAI~esE~Ews~~~nkkliets~k~lR~~IpKglpYfhV~Fgl 563 (628)
T KOG2477|consen 484 DVIFYENAPSLQRRPHTAIECIPVPQEIGSMAPAYFKKAISESEEEWSHRKNKKLIETSKKALRKMIPKGLPYFHVWFGL 563 (628)
T ss_pred CeEEEeccCccccCCceeEEEeechHHhhhhhhHHHHHHHhhhHHHHHhhhHHHHHHhhHHHHHHhcccCCCeEEEEEec
Confidence 99999933 245799999999999999999999999999999999975442 3345667899999999999999997
Q ss_pred CCCeeeeecC
Q 008885 540 PEGFGRLAEH 549 (550)
Q Consensus 540 ~~G~~~v~e~ 549 (550)
++|++||||+
T Consensus 564 d~GfaHVIEd 573 (628)
T KOG2477|consen 564 DGGFAHVIED 573 (628)
T ss_pred cCceeeeecc
Confidence 8999999996
No 6
>PF04677 CwfJ_C_1: Protein similar to CwfJ C-terminus 1; InterPro: IPR006768 This group of sequences contain a conserved C-terminal domain which is found in the Schizosaccharomyces pombe (Fission yeast) protein Cwf19 (Q09909 from SWISSPROT) and its homologues. Cwf19 is part of the Cdc5p complex involved in mRNA splicing []. This domain is found in association with IPR006767 from INTERPRO, which is generally C-terminal and adjacent to this domain.
Probab=100.00 E-value=5.7e-38 Score=279.06 Aligned_cols=116 Identities=43% Similarity=0.850 Sum_probs=110.9
Q ss_pred ccCCCCCCcccCCCCCCCcceEEEECCEEEEEecCCCCCCCeEEEEeccccCCCCCCCHHHHHHHHHHHHHHHHHHhhcC
Q 008885 384 SANRSKECWFCLSSPSVESHLIVSVGEYYYCALPKGPLVEDHVLVIPVEHVPNTISTSPECEKELGRFQNSLMMYYKNQG 463 (550)
Q Consensus 384 ~~~~~~~C~FC~~~~~~~~hliis~g~~~yl~l~kgpl~~gH~lIiP~~H~~s~~~l~~~~~~Ei~~~~~~L~~~~~~~~ 463 (550)
..+.+++||||++|+++++|||||+|+++||+||+|||.+|||||||++|++|+.++|+++|+||++|+++|++||+++|
T Consensus 6 ~~~~~~~C~fCl~n~~~~khliisiG~~~YLalpkg~L~~gH~lIvPi~H~~s~~~~de~~~~Ei~~f~~~L~~mf~~~~ 85 (121)
T PF04677_consen 6 QNKAPDNCWFCLSNPNVEKHLIISIGDEVYLALPKGPLVPGHCLIVPIQHVPSLTELDEEVWEEIRNFQKSLRKMFASQG 85 (121)
T ss_pred cCCCCCCCCCccCCCCccceEEEEEcCcEEEEeCCCCccCCEEEEEecceecccccCCHHHHHHHHHHHHHHHHHHHHcC
Confidence 34568899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceEEEeecCCCcCeEEEEEeecCCCchHHHHHHHH
Q 008885 464 KEAVFFEWLSKRGTHANLQAVPIPTSKAAAVQDIFN 499 (550)
Q Consensus 464 ~~~v~~E~~~~~~~H~hi~~vPvp~~~~~~~~~~F~ 499 (550)
+++||||+...+..|+||||||||+++++.++.|||
T Consensus 86 ~~vvf~E~~~~~~~H~~iq~vPvp~~~~~~~~~yFk 121 (121)
T PF04677_consen 86 KDVVFFERVRKRNPHTHIQCVPVPKELGEKAPSYFK 121 (121)
T ss_pred CCEEEEEEeCCCCcEEEEEEEEcCHHHHHhhhhhcC
Confidence 999999955677899999999999999999999996
No 7
>COG2129 Predicted phosphoesterases, related to the Icc protein [General function prediction only]
Probab=99.89 E-value=6.3e-22 Score=190.21 Aligned_cols=198 Identities=17% Similarity=0.210 Sum_probs=143.7
Q ss_pred CCCCEEEEEcCCCCChHHHHHHHHHHhhhcCCCcEEEEecCCC----CCChhhHHHH-HHHhcccCCCCccEEEEecCCC
Q 008885 1 MSPPRILLCGDVLGRLNQLFKRVQSVNKSAGPFDAVLCVGQFF----PDSSELLDEF-MNYVEGRSEIPIPTYFIGDYGV 75 (550)
Q Consensus 1 M~~~KILv~GDvhG~~~~l~~kv~~l~~k~GpfD~li~~GDff----~~~~~~~~~~-~~~l~g~~~~p~ptyfv~GNhe 75 (550)
|.+||||++.|.||+.+.+-+.+.....+ .+|+++++||+- ++.....+.+ .+.+ ....+|+|+++||+|
T Consensus 1 ~~~mkil~vtDlHg~~~~~~k~~~~~~~~--~~D~lviaGDlt~~~~~~~~~~~~~~~~e~l---~~~~~~v~avpGNcD 75 (226)
T COG2129 1 IKKMKILAVTDLHGSEDSLKKLLNAAADI--RADLLVIAGDLTYFHFGPKEVAEELNKLEAL---KELGIPVLAVPGNCD 75 (226)
T ss_pred CCcceEEEEeccccchHHHHHHHHHHhhc--cCCEEEEecceehhhcCchHHHHhhhHHHHH---HhcCCeEEEEcCCCC
Confidence 56899999999999997655444443322 589999999985 3322222221 1222 567799999999976
Q ss_pred ChHHHHHHhhccccccCcccCCceecCcEEEcCCCCeEEEcCeEEEEEeCccCCCCCCCCCCCHHHHHHHHH-hhc-CCC
Q 008885 76 GAAKVLLAASKNSANQGFKMDGFKVTDNLFWLKGSGNFTLHGLSVAYLSGRQSSEGQQFGTYSQDDVDALRA-LAE-EPG 153 (550)
Q Consensus 76 ~~~~~l~~l~~~~~~~~~~~~g~ei~~Nl~~Lg~~gv~~i~GlrIa~lgG~~~~~~~~~~~~te~di~~L~~-l~~-~~~ 153 (550)
+..+.+.+.. . ..|++ ..+.+++|+.|.|+||+.++++++.++|+|+++....+ +.+ ...
T Consensus 76 -~~~v~~~l~~---------~----~~~v~----~~v~~i~~~~~~G~Ggsn~tp~nt~~e~~E~~I~s~l~~~v~~~~~ 137 (226)
T COG2129 76 -PPEVIDVLKN---------A----GVNVH----GRVVEIGGYGFVGFGGSNPTPFNTPREFSEDEIYSKLKSLVKKADN 137 (226)
T ss_pred -hHHHHHHHHh---------c----ccccc----cceEEecCcEEEEecccCCCCCCCccccCHHHHHHHHHHHHhcccC
Confidence 5666666541 1 23444 36889999999999999999999999999999876443 321 222
Q ss_pred CccEEEeCCCCccccccccccccccccCCCCCCcHHHHHHHHHhCCCEEEEccCCCccccccccCCCCcceeEEEEcCCC
Q 008885 154 IVDLFLTNEWPSGVTNKAAASDMLVGISDSSNTDSTVSELVAEIKPRYHIAGSKGVFYAREPYSNVDAVHVTRFLGLAPV 233 (550)
Q Consensus 154 ~vDILLTh~wP~gi~~~~~~~~~~~~~~~~~~Gs~~i~~l~~~lkPRYhf~Gh~~~f~er~Py~~~~~~~~TRFI~La~~ 233 (550)
.+-||+||.||+|..+.. |.+ ..++||.+|+++++++||+.++|||.|. .+.-+..+.|.|||+|+.
T Consensus 138 ~~~Il~~HaPP~gt~~d~-----~~g--~~hvGS~~vr~~ieefqP~l~i~GHIHE------s~G~d~iG~TivVNPG~~ 204 (226)
T COG2129 138 PVNILLTHAPPYGTLLDT-----PSG--YVHVGSKAVRKLIEEFQPLLGLHGHIHE------SRGIDKIGNTIVVNPGPL 204 (226)
T ss_pred cceEEEecCCCCCccccC-----CCC--ccccchHHHHHHHHHhCCceEEEeeecc------cccccccCCeEEECCCCc
Confidence 223999999999996531 222 1489999999999999999999999773 122236789999999996
Q ss_pred C
Q 008885 234 G 234 (550)
Q Consensus 234 g 234 (550)
+
T Consensus 205 ~ 205 (226)
T COG2129 205 G 205 (226)
T ss_pred c
Confidence 5
No 8
>cd07388 MPP_Tt1561 Thermus thermophilus Tt1561 and related proteins, metallophosphatase domain. This family includes bacterial proteins related to Tt1561 (also known as Aq1956 in Aquifex aeolicus), an uncharacterized Thermus thermophilus protein. The conserved domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets,
Probab=99.89 E-value=1e-21 Score=193.27 Aligned_cols=195 Identities=17% Similarity=0.209 Sum_probs=134.4
Q ss_pred CCEEEEEcCCCCChHHHHHHHHHHhhhcCCCcEEEEecCCCCCChhhHHHHHHHhcccCCCCccEEEEecCCCChHHHHH
Q 008885 3 PPRILLCGDVLGRLNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSSELLDEFMNYVEGRSEIPIPTYFIGDYGVGAAKVLL 82 (550)
Q Consensus 3 ~~KILv~GDvhG~~~~l~~kv~~l~~k~GpfD~li~~GDff~~~~~~~~~~~~~l~g~~~~p~ptyfv~GNhe~~~~~l~ 82 (550)
.+|||+++|+||++..+-+.++.+ ++. .+|+||++||+...... .+++.+++.-...++.|+|+|+||||.+ +.+
T Consensus 4 ~~kIl~iSDiHgn~~~le~l~~~~-~~~-~~D~vv~~GDl~~~g~~-~~~~~~~l~~l~~l~~pv~~V~GNhD~~--v~~ 78 (224)
T cd07388 4 VRYVLATSNPKGDLEALEKLVGLA-PET-GADAIVLIGNLLPKAAK-SEDYAAFFRILGEAHLPTFYVPGPQDAP--LWE 78 (224)
T ss_pred eeEEEEEEecCCCHHHHHHHHHHH-hhc-CCCEEEECCCCCCCCCC-HHHHHHHHHHHHhcCCceEEEcCCCChH--HHH
Confidence 589999999999998765444433 223 48999999999654311 1223333322256778999999999863 334
Q ss_pred HhhccccccCcccCCceecCcEEEcCCCCeEEEcC-eEEEEEeCccCCCCCCCCCCCHHHH--------HH-HHHhhcCC
Q 008885 83 AASKNSANQGFKMDGFKVTDNLFWLKGSGNFTLHG-LSVAYLSGRQSSEGQQFGTYSQDDV--------DA-LRALAEEP 152 (550)
Q Consensus 83 ~l~~~~~~~~~~~~g~ei~~Nl~~Lg~~gv~~i~G-lrIa~lgG~~~~~~~~~~~~te~di--------~~-L~~l~~~~ 152 (550)
.+... .+...+-++...|+. +++++.| ++|+|+||+..++ .+++|+++ +. |..+....
T Consensus 79 ~l~~~-------~~~~~~~p~~~~lh~-~~~~~~g~~~~~GlGGs~~~~----~e~sE~e~~~~~~~~~~~~l~~~~~~~ 146 (224)
T cd07388 79 YLREA-------YNAELVHPEIRNVHE-TFAFWRGPYLVAGVGGEIADE----GEPEEHEALRYPAWVAEYRLKALWELK 146 (224)
T ss_pred HHHHH-------hcccccCccceecCC-CeEEecCCeEEEEecCCcCCC----CCcCHHHHhhhhhhHHHHHHHHHHhCC
Confidence 33210 001112245566775 5667755 8999999998754 45678873 22 22232234
Q ss_pred CCccEEEeCCCCccccccccccccccccCCCCCCcHHHHHHHHHhCCCEEEEccCCCccccccccCCCCcceeEEEEcCC
Q 008885 153 GIVDLFLTNEWPSGVTNKAAASDMLVGISDSSNTDSTVSELVAEIKPRYHIAGSKGVFYAREPYSNVDAVHVTRFLGLAP 232 (550)
Q Consensus 153 ~~vDILLTh~wP~gi~~~~~~~~~~~~~~~~~~Gs~~i~~l~~~lkPRYhf~Gh~~~f~er~Py~~~~~~~~TRFI~La~ 232 (550)
...||||||.||.|+.- .++||.++++++++.+|++++|||.|.-+| ..+.|.+||.|+
T Consensus 147 ~~~~VLv~H~PP~g~g~-------------~h~GS~alr~~I~~~~P~l~i~GHih~~~~--------~~g~t~vvNpg~ 205 (224)
T cd07388 147 DYRKVFLFHTPPYHKGL-------------NEQGSHEVAHLIKTHNPLVVLVGGKGQKHE--------LLGASWVVVPGD 205 (224)
T ss_pred CCCeEEEECCCCCCCCC-------------CccCHHHHHHHHHHhCCCEEEEcCCceeEE--------EeCCEEEECCCc
Confidence 67999999999999821 379999999999999999999999874445 466899999999
Q ss_pred CCC
Q 008885 233 VGN 235 (550)
Q Consensus 233 ~g~ 235 (550)
+..
T Consensus 206 ~~~ 208 (224)
T cd07388 206 LSE 208 (224)
T ss_pred ccC
Confidence 754
No 9
>cd07392 MPP_PAE1087 Pyrobaculum aerophilum PAE1087 and related proteins, metallophosphatase domain. PAE1087 is an uncharacterized Pyrobaculum aerophilum protein with a metallophosphatase domain. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordina
Probab=99.86 E-value=4.3e-20 Score=175.76 Aligned_cols=187 Identities=15% Similarity=0.125 Sum_probs=129.5
Q ss_pred EEEEcCCCCChHHHHHHHHHHhhhcCCCcEEEEecCCCCCChhhHHHHHHHhcccCCCCccEEEEecCCCChHHHHHHhh
Q 008885 6 ILLCGDVLGRLNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSSELLDEFMNYVEGRSEIPIPTYFIGDYGVGAAKVLLAAS 85 (550)
Q Consensus 6 ILv~GDvhG~~~~l~~kv~~l~~k~GpfD~li~~GDff~~~~~~~~~~~~~l~g~~~~p~ptyfv~GNhe~~~~~l~~l~ 85 (550)
||++||+||++..+.. ..++ ..++|+||++||+............+++ ...++|+|+|+||||.. .....+
T Consensus 1 i~~~sD~H~~~~~~~~--~~~~--~~~~D~vv~~GDl~~~~~~~~~~~~~~l---~~~~~p~~~v~GNHD~~-~~~~~~- 71 (188)
T cd07392 1 ILAISDIHGDVEKLEA--IILK--AEEADAVIVAGDITNFGGKEAAVEINLL---LAIGVPVLAVPGNCDTP-EILGLL- 71 (188)
T ss_pred CEEEEecCCCHHHHHH--HHhh--ccCCCEEEECCCccCcCCHHHHHHHHHH---HhcCCCEEEEcCCCCCH-HHHHhh-
Confidence 7999999999987654 2222 3368999999999765433211222444 56789999999999863 222211
Q ss_pred ccccccCcccCCceecCcEEEcCCCCeEEEcCeEEEEEeCccCCCCCCCCCCCHHHHHHHHHhhcCCCCccEEEeCCCCc
Q 008885 86 KNSANQGFKMDGFKVTDNLFWLKGSGNFTLHGLSVAYLSGRQSSEGQQFGTYSQDDVDALRALAEEPGIVDLFLTNEWPS 165 (550)
Q Consensus 86 ~~~~~~~~~~~g~ei~~Nl~~Lg~~gv~~i~GlrIa~lgG~~~~~~~~~~~~te~di~~L~~l~~~~~~vDILLTh~wP~ 165 (550)
.++...+. ..++.++|++|++++|...........+++++++.+..+.......+||+||.||.
T Consensus 72 ---------------~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~ilv~H~pp~ 135 (188)
T cd07392 72 ---------------TSAGLNLH-GKVVEVGGYTFVGIGGSNPTPFNTPIELSEEEIVSDGRLNNLLAKNLILVTHAPPY 135 (188)
T ss_pred ---------------hcCcEecC-CCEEEECCEEEEEeCCCCCCCCCCccccCHHHHHHhhhhhccCCCCeEEEECCCCc
Confidence 23444555 35667899999999997654444445778888877633333346789999999998
Q ss_pred cc-cccccccccccccCCCCCCcHHHHHHHHHhCCCEEEEccCCCccccccccCCCCcceeEEEEcC
Q 008885 166 GV-TNKAAASDMLVGISDSSNTDSTVSELVAEIKPRYHIAGSKGVFYAREPYSNVDAVHVTRFLGLA 231 (550)
Q Consensus 166 gi-~~~~~~~~~~~~~~~~~~Gs~~i~~l~~~lkPRYhf~Gh~~~f~er~Py~~~~~~~~TRFI~La 231 (550)
+. .+... . ....|+..+.+++++.+|+++||||.|..+.. . ....|++||.|
T Consensus 136 ~~~~d~~~-----~---~~~~g~~~l~~li~~~~~~~~l~GH~H~~~~~---~---~~~~~~~~n~G 188 (188)
T cd07392 136 GTAVDRVS-----G---GFHVGSKAIRKFIEERQPLLCICGHIHESRGV---D---KIGNTLVVNPG 188 (188)
T ss_pred CCcccccC-----C---CCccCCHHHHHHHHHhCCcEEEEeccccccce---e---eeCCeEEecCC
Confidence 84 33211 0 12479999999999999999999998876541 1 35579999976
No 10
>PF14582 Metallophos_3: Metallophosphoesterase, calcineurin superfamily; PDB: 1UF3_B 2YVT_A.
Probab=99.63 E-value=1.4e-14 Score=139.27 Aligned_cols=200 Identities=18% Similarity=0.236 Sum_probs=119.2
Q ss_pred CEEEEEcCCCCChHHHHHHHHHHhhhcCCCcEEEEecCCCCCChhhHHHH--------------------------HHHh
Q 008885 4 PRILLCGDVLGRLNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSSELLDEF--------------------------MNYV 57 (550)
Q Consensus 4 ~KILv~GDvhG~~~~l~~kv~~l~~k~GpfD~li~~GDff~~~~~~~~~~--------------------------~~~l 57 (550)
-|||+++|.+|+++.+-+.+..+..+. .|+|+++||+...... .++| ..++
T Consensus 6 ~kilA~s~~~g~~e~l~~l~~~~~e~~--~D~~v~~G~~~~~~a~-~~e~~~a~~~~r~p~k~~i~~e~~~~~e~~~~ff 82 (255)
T PF14582_consen 6 RKILAISNFRGDFELLERLVEVIPEKG--PDAVVFVGDLLKAEAR-SDEYERAQEEQREPDKSEINEEECYDSEALDKFF 82 (255)
T ss_dssp -EEEEEE--TT-HHHHHHHHHHHHHHT---SEEEEES-SS-TCHH-HHHHHHHHHTT----THHHHHHHHHHHHHHHHHH
T ss_pred hhheeecCcchHHHHHHHHHhhccccC--CCEEEEeccccccchh-hhHHHHHhhhccCcchhhhhhhhhhhHHHHHHHH
Confidence 489999999999998887777777773 6999999999654211 1112 2444
Q ss_pred cccCCCCccEEEEecCCCChHH-HHHHhhccccccCcccCCceecCcEEEcCCCCeEEEcC-eEEEEEeCccCCCCC---
Q 008885 58 EGRSEIPIPTYFIGDYGVGAAK-VLLAASKNSANQGFKMDGFKVTDNLFWLKGSGNFTLHG-LSVAYLSGRQSSEGQ--- 132 (550)
Q Consensus 58 ~g~~~~p~ptyfv~GNhe~~~~-~l~~l~~~~~~~~~~~~g~ei~~Nl~~Lg~~gv~~i~G-lrIa~lgG~~~~~~~--- 132 (550)
.-...+++||++||||+|.|.+ ++..+.. ..-+.+|++.+++ +++.+.| +-|+|+||.......
T Consensus 83 ~~L~~~~~p~~~vPG~~Dap~~~~lr~a~~----------~e~v~p~~~~vH~-sf~~~~g~y~v~G~GGeI~~~~~~~~ 151 (255)
T PF14582_consen 83 RILGELGVPVFVVPGNMDAPERFFLREAYN----------AEIVTPHIHNVHE-SFFFWKGEYLVAGMGGEITDDQREEE 151 (255)
T ss_dssp HHHHCC-SEEEEE--TTS-SHHHHHHHHHH----------CCCC-TTEEE-CT-CEEEETTTEEEEEE-SEEESSS-BCS
T ss_pred HHHHhcCCcEEEecCCCCchHHHHHHHHhc----------cceeccceeeeee-eecccCCcEEEEecCccccCCCcccc
Confidence 4447899999999999998755 3444331 2236799999994 7778887 999999997543221
Q ss_pred CCCCCC-HHHHHHHHHhhcCCCCccEEEeCCCCccccccccccccccccCCCCCCcHHHHHHHHHhCCCEEEEccCCCcc
Q 008885 133 QFGTYS-QDDVDALRALAEEPGIVDLFLTNEWPSGVTNKAAASDMLVGISDSSNTDSTVSELVAEIKPRYHIAGSKGVFY 211 (550)
Q Consensus 133 ~~~~~t-e~di~~L~~l~~~~~~vDILLTh~wP~gi~~~~~~~~~~~~~~~~~~Gs~~i~~l~~~lkPRYhf~Gh~~~f~ 211 (550)
..-.|- .+..-.|+.+......--|||+|.+|. + . . + ..++||..+++|++..+|+..+|||.|.--
T Consensus 152 ~~LrYP~weaey~lk~l~elk~~r~IlLfhtpPd-~-~--k------g--~~h~GS~~V~dlIk~~~P~ivl~Ghihe~~ 219 (255)
T PF14582_consen 152 FKLRYPAWEAEYSLKFLRELKDYRKILLFHTPPD-L-H--K------G--LIHVGSAAVRDLIKTYNPDIVLCGHIHESH 219 (255)
T ss_dssp SS-EEEHHHHHHHHGGGGGCTSSEEEEEESS-BT-B-C--T------C--TBTTSBHHHHHHHHHH--SEEEE-SSS-EE
T ss_pred ccccchHHHHHHHHHHHHhcccccEEEEEecCCc-c-C--C------C--cccccHHHHHHHHHhcCCcEEEecccccch
Confidence 111111 121222443333334567999999992 1 1 1 1 147999999999999999999999987655
Q ss_pred ccccccCCCCcceeEEEEcCCCCC
Q 008885 212 AREPYSNVDAVHVTRFLGLAPVGN 235 (550)
Q Consensus 212 er~Py~~~~~~~~TRFI~La~~g~ 235 (550)
..+ ....|-.||+|.+.-
T Consensus 220 ~~e------~lG~TlVVNPGsL~~ 237 (255)
T PF14582_consen 220 GKE------SLGKTLVVNPGSLAE 237 (255)
T ss_dssp --E------EETTEEEEE--BGGG
T ss_pred hhH------HhCCEEEecCccccc
Confidence 322 467899999999854
No 11
>PRK10687 purine nucleoside phosphoramidase; Provisional
Probab=99.63 E-value=1.4e-15 Score=135.38 Aligned_cols=100 Identities=19% Similarity=0.173 Sum_probs=79.8
Q ss_pred CCCcccCCCCCCCcceEEEECCEEEEEecCCCCCCCeEEEEeccccCCCCCCCHHHHHHHHHHHHHHHHHHhhc-----C
Q 008885 389 KECWFCLSSPSVESHLIVSVGEYYYCALPKGPLVEDHVLVIPVEHVPNTISTSPECEKELGRFQNSLMMYYKNQ-----G 463 (550)
Q Consensus 389 ~~C~FC~~~~~~~~hliis~g~~~yl~l~kgpl~~gH~lIiP~~H~~s~~~l~~~~~~Ei~~~~~~L~~~~~~~-----~ 463 (550)
++|.||.+........+|+.++.++++++..|+++||+||||.+|++++.+++++++.++..+.+.+.++.++. |
T Consensus 3 ~~CiFC~I~~g~~p~~~v~edd~~~aflD~~P~~~GH~LViPK~H~~~l~dl~~~~~~~l~~l~~~~~~~~~~~~~~~~g 82 (119)
T PRK10687 3 EETIFSKIIRREIPSDIVYQDELVTAFRDISPQAPTHILIIPNILIPTVNDVSAEHEQALGRMITVAAKIAEQEGIAEDG 82 (119)
T ss_pred CCCchhhhhcCCCCCCEEEECCCEEEEEcCCCCCCccEEEEehhHhCChhHCChHHHHHHHHHHHHHHHHHHHhCCCCCc
Confidence 47999998644444556789999999999999999999999999999999999999999999888777765432 3
Q ss_pred CceEEEe--ecCCCcCeEEEEEeecCC
Q 008885 464 KEAVFFE--WLSKRGTHANLQAVPIPT 488 (550)
Q Consensus 464 ~~~v~~E--~~~~~~~H~hi~~vPvp~ 488 (550)
+.+++.. ...+.+.|+|+|+||...
T Consensus 83 ~~l~~n~G~~agQ~V~HlHiHvI~g~~ 109 (119)
T PRK10687 83 YRLIMNTNRHGGQEVYHIHMHLLGGRP 109 (119)
T ss_pred eEEEEeCCCcCCcccCEEEEEECCCcc
Confidence 4444433 234457899999999743
No 12
>COG0537 Hit Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases [Nucleotide transport and metabolism / Carbohydrate transport and metabolism / General function prediction only]
Probab=99.54 E-value=3e-14 Score=130.25 Aligned_cols=99 Identities=22% Similarity=0.202 Sum_probs=79.5
Q ss_pred CCcccCCCCCCCcceEEEECCEEEEEecCCCCCCCeEEEEeccccCCCCCCCHHHHHHHHHHHHHHHHHHh----hcCCc
Q 008885 390 ECWFCLSSPSVESHLIVSVGEYYYCALPKGPLVEDHVLVIPVEHVPNTISTSPECEKELGRFQNSLMMYYK----NQGKE 465 (550)
Q Consensus 390 ~C~FC~~~~~~~~hliis~g~~~yl~l~kgpl~~gH~lIiP~~H~~s~~~l~~~~~~Ei~~~~~~L~~~~~----~~~~~ 465 (550)
.|.||.+-..-....+|+.+++++++++..|.++||+||||.+|+.++.+++++++.+|....+.+.+.++ +.|+.
T Consensus 2 ~ciFc~ii~~e~~~~~Vye~~~~~afld~~P~~~gH~LviPk~h~~~l~~l~~~~~~~l~~~~~~ia~al~~~~~~~g~n 81 (138)
T COG0537 2 MCIFCKIIRGEIPANKVYEDEHVLAFLDIYPAAPGHTLVIPKRHVSDLEDLDPEELAELFLLAQKIAKALKEAFGADGYN 81 (138)
T ss_pred CceeeeeecCCCCceEEEeCCCEEEEecCCCCCCCeEEEEeccchhhhhhCCHHHHHHHHHHHHHHHHHHHHHhCCCceE
Confidence 69999864333445788999999999999999999999999999999999999999999877766666554 45666
Q ss_pred eEEEe--ecCCCcCeEEEEEeecCC
Q 008885 466 AVFFE--WLSKRGTHANLQAVPIPT 488 (550)
Q Consensus 466 ~v~~E--~~~~~~~H~hi~~vPvp~ 488 (550)
++.+. ..++-+.|+|+|+||...
T Consensus 82 i~~N~g~~agq~V~HlH~HvIPr~~ 106 (138)
T COG0537 82 IGINNGKAAGQEVFHLHIHIIPRYK 106 (138)
T ss_pred EEEecCcccCcCcceEEEEEcCCcC
Confidence 55543 234457899999999754
No 13
>cd01275 FHIT FHIT (fragile histidine family): FHIT proteins, related to the HIT family carry a motif HxHxH/Qxx (x, is a hydrophobic amino acid), On the basis of sequence, substrate specificity, structure, evolution and mechanism, HIT proteins are classified into three branches: the Hint branch, which consists of adenosine 5' -monophosphoramide hydrolases, the Fhit branch, that consists of diadenosine polyphosphate hydrolases, and the GalT branch consisting of specific nucloside monophosphate transferases. Fhit plays a very important role in the development of tumours. Infact, Fhit deletions are among the earliest and most frequent genetic alterations in the development of tumours.
Probab=99.52 E-value=8.4e-14 Score=125.38 Aligned_cols=99 Identities=23% Similarity=0.268 Sum_probs=77.9
Q ss_pred CcccCCCC-CCCcceEEEECCEEEEEecCCCCCCCeEEEEeccccCCCCCCCHHHHHHHHHHHHHHHHHHhh----cCCc
Q 008885 391 CWFCLSSP-SVESHLIVSVGEYYYCALPKGPLVEDHVLVIPVEHVPNTISTSPECEKELGRFQNSLMMYYKN----QGKE 465 (550)
Q Consensus 391 C~FC~~~~-~~~~hliis~g~~~yl~l~kgpl~~gH~lIiP~~H~~s~~~l~~~~~~Ei~~~~~~L~~~~~~----~~~~ 465 (550)
|.||.+.. +.+...||+.++.++++++..|..+||+||||.+|++++.+|+++++.+|..+.+.+.+.+++ .++.
T Consensus 1 C~fC~i~~~e~~~~~iv~e~~~~~~~~~~~p~~~gh~lIiPk~H~~~~~~L~~~e~~~l~~~~~~v~~~l~~~~~~~~~n 80 (126)
T cd01275 1 CVFCDIPIKPDEDNLVFYRTKHSFAVVNLYPYNPGHVLVVPYRHVPRLEDLTPEEIADLFKLVQLAMKALKVVYKPDGFN 80 (126)
T ss_pred CccccCccCCCccccEEEeCCCEEEEEcCCCCCCCcEEEEeccccCChhhCCHHHHHHHHHHHHHHHHHHHHhcCCCceE
Confidence 99998753 332257899999999999999999999999999999999999999999999888766666554 3444
Q ss_pred eEEEe--ecCCCcCeEEEEEeecCCC
Q 008885 466 AVFFE--WLSKRGTHANLQAVPIPTS 489 (550)
Q Consensus 466 ~v~~E--~~~~~~~H~hi~~vPvp~~ 489 (550)
+++.. ...+...|+|+|+||+...
T Consensus 81 ~~~~~g~~~gq~v~H~HiHiiPR~~~ 106 (126)
T cd01275 81 IGINDGKAGGGIVPHVHIHIVPRWNG 106 (126)
T ss_pred EEEeCCcccCCCcCEEEEEEeCCcCC
Confidence 44333 1233468999999997543
No 14
>cd01277 HINT_subgroup HINT (histidine triad nucleotide-binding protein) subgroup: Members of this CD belong to the superfamily of histidine triad hydrolases that act on alpha-phosphate of ribonucleotides. This subgroup includes members from all three forms of cellular life. Although the biochemical function has not been characterised for many of the members of this subgroup, the proteins from Yeast have been shown to be involved in secretion, peroxisome formation and gene expression.
Probab=99.50 E-value=1.6e-13 Score=118.68 Aligned_cols=97 Identities=22% Similarity=0.260 Sum_probs=75.9
Q ss_pred CCcccCCCCCCCcceEEEECCEEEEEecCCCCCCCeEEEEeccccCCCCCCCHHHHHHHHHHHHHHHHHHhh----cCCc
Q 008885 390 ECWFCLSSPSVESHLIVSVGEYYYCALPKGPLVEDHVLVIPVEHVPNTISTSPECEKELGRFQNSLMMYYKN----QGKE 465 (550)
Q Consensus 390 ~C~FC~~~~~~~~hliis~g~~~yl~l~kgpl~~gH~lIiP~~H~~s~~~l~~~~~~Ei~~~~~~L~~~~~~----~~~~ 465 (550)
+|.||.....-....+|+.++.+++++|..|..|||++|+|.+|+.++.+++++++.++....+.+.+.+.+ .+++
T Consensus 1 ~C~~c~ii~~e~~~~iv~e~~~~~a~~~~~~~~pg~~lI~Pk~H~~~~~~l~~~e~~~l~~~~~~v~~~l~~~~~~~~~n 80 (103)
T cd01277 1 DCIFCKIIAGEIPSYKVYEDDHVLAFLDINPASKGHTLVIPKKHYENLLDLDPEELAELILAAKKVARALKKALKADGLN 80 (103)
T ss_pred CCccccccCCCCCCCEEEeCCCEEEEECCCCCCCeeEEEEeccccCChhhCCHHHHHHHHHHHHHHHHHHHHhcCCCceE
Confidence 599998753322234899999999999999999999999999999999999999988888777666555443 4566
Q ss_pred eEEEe--ecCCCcCeEEEEEeec
Q 008885 466 AVFFE--WLSKRGTHANLQAVPI 486 (550)
Q Consensus 466 ~v~~E--~~~~~~~H~hi~~vPv 486 (550)
.++.+ ...+...|+|+|++|+
T Consensus 81 ~~~~~~~~~g~~~~H~HiHiiPR 103 (103)
T cd01277 81 ILQNNGRAAGQVVFHVHVHVIPR 103 (103)
T ss_pred EEEeCCcccCcccCEEEEEEccC
Confidence 55554 1223468999999995
No 15
>cd07397 MPP_DevT Myxococcus xanthus DevT and related proteins, metallophosphatase domain. DevT is a component in the C-signal response pathway in Myxococcus xanthus that stimulates the developmentally regulated expression of the FruA response regulator protein and is required for methylation of FrzCD during fruiting body formation. DevT mutants having an in-frame deletion in the devT gene, display delayed aggregation and a cell autonomous sporulation defect. DevT belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomy
Probab=99.48 E-value=2.3e-12 Score=127.64 Aligned_cols=203 Identities=20% Similarity=0.253 Sum_probs=114.1
Q ss_pred CEEEEEcCCCCChHHHHHHHHHHhhhcCCCcEEEEecCCCCCChhhHHHHHHHhcccCCCCccEEEEecCCCChHHH---
Q 008885 4 PRILLCGDVLGRLNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSSELLDEFMNYVEGRSEIPIPTYFIGDYGVGAAKV--- 80 (550)
Q Consensus 4 ~KILv~GDvhG~~~~l~~kv~~l~~k~GpfD~li~~GDff~~~~~~~~~~~~~l~g~~~~p~ptyfv~GNhe~~~~~--- 80 (550)
.||+++||+||++.... ++.+++ . .+|+||++||+.... .++.+.+ ..++.|+|+|.||||.-...
T Consensus 1 ~rIa~isDiHg~~~~~~--~~~l~~-~-~pD~Vl~~GDi~~~~----~~~~~~l---~~l~~p~~~V~GNHD~~~~~~~~ 69 (238)
T cd07397 1 LRIAIVGDVHGQWDLED--IKALHL-L-QPDLVLFVGDFGNES----VQLVRAI---SSLPLPKAVILGNHDAWYDATFR 69 (238)
T ss_pred CEEEEEecCCCCchHHH--HHHHhc-c-CCCEEEECCCCCcCh----HHHHHHH---HhCCCCeEEEcCCCccccccccc
Confidence 48999999999976532 334433 2 479999999997532 2344444 45678999999999853210
Q ss_pred --HHHhhccccccCcccCCceecCcEEEcCCCCeEEEcCeEEEEEeCcc-CCCCCCC-------CCC---CHHH-HHHHH
Q 008885 81 --LLAASKNSANQGFKMDGFKVTDNLFWLKGSGNFTLHGLSVAYLSGRQ-SSEGQQF-------GTY---SQDD-VDALR 146 (550)
Q Consensus 81 --l~~l~~~~~~~~~~~~g~ei~~Nl~~Lg~~gv~~i~GlrIa~lgG~~-~~~~~~~-------~~~---te~d-i~~L~ 146 (550)
.+.+.. .-+..-+ .++. .+.+++..+.++.+|+.- +.+...+ ..| +-+| ++.+.
T Consensus 70 ~k~~~l~~----------~L~~lg~-~~l~-~~~~~~~~~~~~vvG~R~~~~~g~~~~~~~~vr~~fgi~s~~eA~~~iv 137 (238)
T cd07397 70 KKGDRVQE----------QLELLGD-LHCG-WGRLDFPPLPLSVVGGRPFSAGGGFWLSKKAVKAVYGVISLEESAQRII 137 (238)
T ss_pred chHHHHHH----------HHHHhCC-cEEe-ecccccCCCCeEEEeeCCccCCCccccCHHHHHHHhCCCCHHHHHHHHH
Confidence 111110 0001111 1222 133345555555555531 1111100 011 2222 22222
Q ss_pred Hhh--cCCCCccEEEeCCCCcccccccccc----ccccccCCCCCCcHHHHHHHHHhC----CCEEEEccCCCc--cccc
Q 008885 147 ALA--EEPGIVDLFLTNEWPSGVTNKAAAS----DMLVGISDSSNTDSTVSELVAEIK----PRYHIAGSKGVF--YARE 214 (550)
Q Consensus 147 ~l~--~~~~~vDILLTh~wP~gi~~~~~~~----~~~~~~~~~~~Gs~~i~~l~~~lk----PRYhf~Gh~~~f--~er~ 214 (550)
+.+ ......+|||||..|.|..+..... ..+. ...+|++.+++.+..++ |+||++||+|.- |...
T Consensus 138 e~~~~~~~~~~~VliaH~~~~G~g~~~~~~cg~d~~~~---~~~~G~~~l~~ai~~~~~~~~~~l~~fGH~H~~l~~~~~ 214 (238)
T cd07397 138 AAAKKAPPDLPLILLAHNGPSGLGSDAEDPCGRDWKPP---GGDWGDPDLALAISQIQQGRQVPLVVFGHMHHRLRRGKG 214 (238)
T ss_pred HHhhhcCCCCCeEEEeCcCCcCCCcccccccccccCCc---CCCCCCHHHHHHHHHHhccCCCCEEEeCCccCccccccc
Confidence 222 2345679999999999997543320 1121 24689999999888877 999999997643 3221
Q ss_pred cccCC--CCcceeEEEEcCCC
Q 008885 215 PYSNV--DAVHVTRFLGLAPV 233 (550)
Q Consensus 215 Py~~~--~~~~~TRFI~La~~ 233 (550)
+|.. .....|.|+|.|.+
T Consensus 215 -~r~~~~~~~~gt~y~N~a~~ 234 (238)
T cd07397 215 -LRNMIAVDREGTVYLNAASV 234 (238)
T ss_pred -ccceeeecCCCeEEEecccc
Confidence 2110 13457999998876
No 16
>cd07379 MPP_239FB Homo sapiens 239FB and related proteins, metallophosphatase domain. 239FB (Fetal brain protein 239) is thought to play a role in central nervous system development, but its specific role in unknown. 239FB is expressed predominantly in human fetal brain from a gene located in the chromosome 11p13 region associated with the mental retardation component of the WAGR (Wilms tumor, Aniridia, Genitourinary anomalies, Mental retardation) syndrome. Orthologous brp-like (brain protein 239-like) proteins have been identified in the invertebrate amphioxus group and in vertebrates. 239FB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzyme
Probab=99.43 E-value=2.4e-12 Score=116.96 Aligned_cols=133 Identities=20% Similarity=0.300 Sum_probs=93.6
Q ss_pred EEEEEcCCCCChHHHHHHHHHHhhhcCCCcEEEEecCCCCCCh-hhHHHHHHHhcccCCCCcc-EEEEecCCCChHHHHH
Q 008885 5 RILLCGDVLGRLNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSS-ELLDEFMNYVEGRSEIPIP-TYFIGDYGVGAAKVLL 82 (550)
Q Consensus 5 KILv~GDvhG~~~~l~~kv~~l~~k~GpfD~li~~GDff~~~~-~~~~~~~~~l~g~~~~p~p-tyfv~GNhe~~~~~l~ 82 (550)
||++++|+||++. .+ ...+.|+||++||++.... ...+.+.+++ .+.+.+ +++|+||||..
T Consensus 1 ~i~~isD~H~~~~-------~~--~~~~~D~vi~~GD~~~~~~~~~~~~~~~~l---~~~~~~~~~~v~GNHD~~----- 63 (135)
T cd07379 1 RFVCISDTHSRHR-------TI--SIPDGDVLIHAGDLTERGTLEELQKFLDWL---KSLPHPHKIVIAGNHDLT----- 63 (135)
T ss_pred CEEEEeCCCCCCC-------cC--cCCCCCEEEECCCCCCCCCHHHHHHHHHHH---HhCCCCeEEEEECCCCCc-----
Confidence 6999999999976 11 1235899999999975432 2233455665 344445 58999999731
Q ss_pred HhhccccccCcccCCceecCcEEEcCCCCeEEEcCeEEEEEeCccCCCCCCCCCCCHHHHHHHHHhhcCCCCccEEEeCC
Q 008885 83 AASKNSANQGFKMDGFKVTDNLFWLKGSGNFTLHGLSVAYLSGRQSSEGQQFGTYSQDDVDALRALAEEPGIVDLFLTNE 162 (550)
Q Consensus 83 ~l~~~~~~~~~~~~g~ei~~Nl~~Lg~~gv~~i~GlrIa~lgG~~~~~~~~~~~~te~di~~L~~l~~~~~~vDILLTh~ 162 (550)
. . ..+.+||+||.
T Consensus 64 --------------~----~-------------------------------------------------~~~~~ilv~H~ 76 (135)
T cd07379 64 --------------L----D-------------------------------------------------PEDTDILVTHG 76 (135)
T ss_pred --------------C----C-------------------------------------------------CCCCEEEEECC
Confidence 0 0 03579999999
Q ss_pred CCccccccccccccccccCCCCCCcHHHHHHHHHhCCCEEEEccCCCccccccccCCCCcceeEEEEcC
Q 008885 163 WPSGVTNKAAASDMLVGISDSSNTDSTVSELVAEIKPRYHIAGSKGVFYAREPYSNVDAVHVTRFLGLA 231 (550)
Q Consensus 163 wP~gi~~~~~~~~~~~~~~~~~~Gs~~i~~l~~~lkPRYhf~Gh~~~f~er~Py~~~~~~~~TRFI~La 231 (550)
+|.++.+.... ....|+..+.+++...+|+++|+||.|..+... .+ .+....|.+||.|
T Consensus 77 ~p~~~~~~~~~--------~~~~g~~~~~~~~~~~~~~~~i~GH~H~~~~~~-~~-~~~~~~t~~in~~ 135 (135)
T cd07379 77 PPYGHLDLVSS--------GQRVGCEELLNRVQRVRPKLHVFGHIHEGYGAE-RV-LDTDGETLFVNAS 135 (135)
T ss_pred CCCcCcccccc--------CcccCCHHHHHHHHHHCCcEEEEcCcCCcCcee-Ee-cccCCCEEEEeCC
Confidence 99987543221 136899999999999999999999988765322 22 2245689999975
No 17
>cd01276 PKCI_related Protein Kinase C Interacting protein related (PKCI): PKCI and related proteins belong to the ubiquitous HIT family of hydrolases that act on alpha-phosphates of ribonucleotides. The members of this subgroup have a conserved HxHxHxx motif (x is a hydrophobic residue) that is a signature for this family. No enzymatic activity has been reported however, for PKCI and its related members.
Probab=99.42 E-value=9.8e-13 Score=114.15 Aligned_cols=96 Identities=21% Similarity=0.211 Sum_probs=72.0
Q ss_pred CCcccCCCCCCCcceEEEECCEEEEEecCCCCCCCeEEEEeccccCCCCCCCHHHHHHHHHHHHHHHHHHhhc-----CC
Q 008885 390 ECWFCLSSPSVESHLIVSVGEYYYCALPKGPLVEDHVLVIPVEHVPNTISTSPECEKELGRFQNSLMMYYKNQ-----GK 464 (550)
Q Consensus 390 ~C~FC~~~~~~~~hliis~g~~~yl~l~kgpl~~gH~lIiP~~H~~s~~~l~~~~~~Ei~~~~~~L~~~~~~~-----~~ 464 (550)
+|.||.+...-....||+.++.+++++|..|..+||+||||.+|++++.+|+++.+.++..+.+.++++.+.. ++
T Consensus 1 ~C~fc~i~~~e~~~~iv~e~~~~~a~~~~~p~~~gh~lIiPk~H~~~~~dl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 80 (104)
T cd01276 1 DCIFCKIIRGEIPAKKVYEDDEVLAFHDINPQAPVHILVIPKKHIASLSDATEEDEELLGHLLSAAAKVAKDLGIAEDGY 80 (104)
T ss_pred CCcceecccCCCccCEEEECCCEEEEECCCCCCCCEEEEEecceeCChHHcccccHHHHHHHHHHHHHHHHHhCCCCCCE
Confidence 4999987543223568899999999999999999999999999999999998877777777666665444432 34
Q ss_pred ceEEEe--ecCCCcCeEEEEEee
Q 008885 465 EAVFFE--WLSKRGTHANLQAVP 485 (550)
Q Consensus 465 ~~v~~E--~~~~~~~H~hi~~vP 485 (550)
++++.. ...+...|+|+|+|+
T Consensus 81 n~~~~~g~~~g~~v~H~HiHii~ 103 (104)
T cd01276 81 RLVINCGKDGGQEVFHLHLHLLG 103 (104)
T ss_pred EEEEeCCCCCCCceeEEEEEEeC
Confidence 433333 122346799999997
No 18
>PF01230 HIT: HIT domain; InterPro: IPR001310 The Histidine Triad (HIT) motif, His-x-His-x-His-x-x (x, a hydrophobic amino acid) was identified as being highly conserved in a variety of organisms []. Crystal structure of rabbit Hint, purified as an adenosine and AMP-binding protein, showed that proteins in the HIT superfamily are conserved as nucleotide-binding proteins and that Hint homologues, which are found in all forms of life, are structurally related to Fhit homologues and GalT-related enzymes, which have more restricted phylogenetic profiles []. Hint homologues including rabbit Hint and yeast Hnt1 hydrolyse adenosine 5' monophosphoramide substrates such as AMP-NH2 and AMP-lysine to AMP plus the amine product and function as positive regulators of Cdk7/Kin28 in vivo []. Fhit homologues are diadenosine polyphosphate hydrolases [] and function as tumour suppressors in human and mouse [] though the tumour suppressing function of Fhit does not depend on ApppA hydrolysis []. The third branch of the HIT superfamily, which includes GalT homologues, contains a related His-X-His-X-Gln motif and transfers nucleoside monophosphate moieties to phosphorylated second substrates rather than hydrolysing them [].; PDB: 3LB5_B 1EMS_A 1Y23_A 3ANO_B 1KPE_B 1KPC_A 4EQE_B 1KPA_A 1KPB_B 4EQG_B ....
Probab=99.35 E-value=3.8e-12 Score=109.41 Aligned_cols=85 Identities=21% Similarity=0.286 Sum_probs=68.5
Q ss_pred ceEEEECCEEEEEecCCCCCCCeEEEEeccccCCCCCCCHHHHHHHHHHHHHHHHHHhh----cCCceEEEe--ecCCCc
Q 008885 403 HLIVSVGEYYYCALPKGPLVEDHVLVIPVEHVPNTISTSPECEKELGRFQNSLMMYYKN----QGKEAVFFE--WLSKRG 476 (550)
Q Consensus 403 hliis~g~~~yl~l~kgpl~~gH~lIiP~~H~~s~~~l~~~~~~Ei~~~~~~L~~~~~~----~~~~~v~~E--~~~~~~ 476 (550)
..+|+.++.++++++..|.++||+||||.+|+.++.+|+++++.+|....+.+.+.+++ .|++++... ...+.+
T Consensus 6 ~~vv~e~~~~~~~~~~~p~~~gh~LVipk~H~~~l~dl~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~~~~~g~~~gq~v 85 (98)
T PF01230_consen 6 ARVVYEDDHFVAFLDIFPISPGHLLVIPKRHVESLSDLPPEERAELMQLVQKVAKALKEAFGPDGYNVIINNGPAAGQSV 85 (98)
T ss_dssp CEEEEE-SSEEEEEESSTSSTTEEEEEESSTGSSGGGSHHHHHHHHHHHHHHHHHHHHHHHTTSEEEEEEEESGGGTSSS
T ss_pred eeEEEECCCEEEEEcCCCCCCeEEEEEecccccchhcCCHHHHHHHHHHHHHHHHHHhcccccceeeccccchhhhcCcc
Confidence 46889999999999999999999999999999999999999999999888887777664 344444433 233457
Q ss_pred CeEEEEEeecC
Q 008885 477 THANLQAVPIP 487 (550)
Q Consensus 477 ~H~hi~~vPvp 487 (550)
+|+|+|+||+.
T Consensus 86 ~HlH~HviPR~ 96 (98)
T PF01230_consen 86 PHLHFHVIPRY 96 (98)
T ss_dssp SS-EEEEEEES
T ss_pred CEEEEEEeccc
Confidence 89999999974
No 19
>TIGR03729 acc_ester putative phosphoesterase. Members of this protein family belong to the larger family pfam00149 (calcineurin-like phosphoesterase), a family largely defined by small motifs of metal-chelating residues. The subfamily in this model shows a good but imperfect co-occurrence in species with domain TIGR03715 that defines a novel class of signal peptide typical of the accessory secretory system.
Probab=99.33 E-value=2.1e-11 Score=121.61 Aligned_cols=200 Identities=12% Similarity=0.006 Sum_probs=111.7
Q ss_pred EEEEEcCCCCChHH-----HHH-HHHHHhhhcCCCcEEEEecCCCCCChhhHHHHHHHhcccCCCCccEEEEecCCCChH
Q 008885 5 RILLCGDVLGRLNQ-----LFK-RVQSVNKSAGPFDAVLCVGQFFPDSSELLDEFMNYVEGRSEIPIPTYFIGDYGVGAA 78 (550)
Q Consensus 5 KILv~GDvhG~~~~-----l~~-kv~~l~~k~GpfD~li~~GDff~~~~~~~~~~~~~l~g~~~~p~ptyfv~GNhe~~~ 78 (550)
||++++|+|.++.. .++ .++.+++. ++|+||++||++.........+..+. ....+|+|+|+||||...
T Consensus 1 ki~~iSDlH~~~~~~~~~~~l~~~~~~~~~~--~~d~vv~~GDl~~~~~~~~~~~~~l~---~~~~~pv~~v~GNHD~~~ 75 (239)
T TIGR03729 1 KIAFSSDLHIDLNHFDTEEMLETLAQYLKKQ--KIDHLHIAGDISNDFQRSLPFIEKLQ---ELKGIKVTFNAGNHDMLK 75 (239)
T ss_pred CEEEEEeecCCCCCCCHHHHHHHHHHHHHhc--CCCEEEECCccccchhhHHHHHHHHH---HhcCCcEEEECCCCCCCC
Confidence 69999999975321 122 23333332 48999999999864322222222222 114589999999998521
Q ss_pred H-HHHHhhccccccCcccCCceecCcEEEcCCCCeE-EEcCeEEEEEeCccCCCC--------------------CCCCC
Q 008885 79 K-VLLAASKNSANQGFKMDGFKVTDNLFWLKGSGNF-TLHGLSVAYLSGRQSSEG--------------------QQFGT 136 (550)
Q Consensus 79 ~-~l~~l~~~~~~~~~~~~g~ei~~Nl~~Lg~~gv~-~i~GlrIa~lgG~~~~~~--------------------~~~~~ 136 (550)
. ....+.. . . +..+|.+..+. +.++++|.|+.|-...+. ...+.
T Consensus 76 ~~~~~~~~~----------~--~--~~~~l~~~~~~~~~~~~~~ig~~gw~d~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 141 (239)
T TIGR03729 76 DLTYEEIES----------N--D--SPLYLHNRFIDIPNTQWRIIGNNGWYDYSFSNDKTSKEILRWKKSFWFDRRIKRP 141 (239)
T ss_pred CCCHHHHHh----------c--c--chhhhcccccccCCCceEEEeeccceecccccccCHHHHHHhhhcEEeecccCCC
Confidence 1 1111210 0 0 34456544432 237899999997432110 00111
Q ss_pred C-----CHHHHHHHHH-hhcCCCCccEEEeCCCCccccc--cccccccccccCCCCCCcHHHHHHHHHhCCCEEEEccCC
Q 008885 137 Y-----SQDDVDALRA-LAEEPGIVDLFLTNEWPSGVTN--KAAASDMLVGISDSSNTDSTVSELVAEIKPRYHIAGSKG 208 (550)
Q Consensus 137 ~-----te~di~~L~~-l~~~~~~vDILLTh~wP~gi~~--~~~~~~~~~~~~~~~~Gs~~i~~l~~~lkPRYhf~Gh~~ 208 (550)
. .+++.+.|++ +++...+.-||+||-+|..... ........ .. ....|+..+.+++++.+|++||+||.|
T Consensus 142 ~~~~~~~~~~l~~l~~~l~~~~~~~~ivvtH~pP~~~~~~~~~~~~~~~-~~-~~~~~s~~l~~li~~~~v~~~i~GH~H 219 (239)
T TIGR03729 142 MSDPERTAIVLKQLKKQLNQLDNKQVIFVTHFVPHRDFIYVPMDHRRFD-MF-NAFLGSQHFGQLLVKYEIKDVIFGHLH 219 (239)
T ss_pred CChHHHHHHHHHHHHHHHHhcCCCCEEEEEcccchHHHhcCCCCCcchh-hh-hhccChHHHHHHHHHhCCCEEEECCcc
Confidence 1 2233344443 2223345689999999965311 00000000 00 125689999999999999999999988
Q ss_pred CccccccccCCCCcceeEEEEcC
Q 008885 209 VFYAREPYSNVDAVHVTRFLGLA 231 (550)
Q Consensus 209 ~f~er~Py~~~~~~~~TRFI~La 231 (550)
..+... ..+.||+++-+
T Consensus 220 ~~~~~~------~i~~~~~~~~~ 236 (239)
T TIGR03729 220 RRFGPL------TIGGTTYHNRP 236 (239)
T ss_pred CCCCCE------EECCEEEEecC
Confidence 655321 34689999754
No 20
>KOG3947 consensus Phosphoesterases [General function prediction only]
Probab=99.32 E-value=1.4e-11 Score=121.34 Aligned_cols=204 Identities=16% Similarity=0.155 Sum_probs=128.4
Q ss_pred CEEEEEcCCCCChHHHHHHHHHHhhhcCCCcEEEEecCCCCC-ChhhHHHHHHHhcccCCCCcc-EEEEecCCCChHHH-
Q 008885 4 PRILLCGDVLGRLNQLFKRVQSVNKSAGPFDAVLCVGQFFPD-SSELLDEFMNYVEGRSEIPIP-TYFIGDYGVGAAKV- 80 (550)
Q Consensus 4 ~KILv~GDvhG~~~~l~~kv~~l~~k~GpfD~li~~GDff~~-~~~~~~~~~~~l~g~~~~p~p-tyfv~GNhe~~~~~- 80 (550)
.++.+++|.|+....+ + +..+-|++|.+|||-.. ..++...+.+++ -++|.- -+.|.||||+..+-
T Consensus 62 ~r~VcisdtH~~~~~i-------~-~~p~gDvlihagdfT~~g~~~ev~~fn~~~---gslph~yKIVIaGNHELtFd~e 130 (305)
T KOG3947|consen 62 ARFVCISDTHELTFDI-------N-DIPDGDVLIHAGDFTNLGLPEEVIKFNEWL---GSLPHEYKIVIAGNHELTFDHE 130 (305)
T ss_pred eEEEEecCcccccCcc-------c-cCCCCceEEeccCCccccCHHHHHhhhHHh---ccCcceeeEEEeeccceeeccc
Confidence 6899999999976552 2 23345999999999653 334455566665 344444 68899999987541
Q ss_pred -HHHh-h--cccccc------Cc-ccCC-ceecCcEEEcCCCCeEEEcCeEEEEEeCccCCCCCCCCCCCHHHHHHHHHh
Q 008885 81 -LLAA-S--KNSANQ------GF-KMDG-FKVTDNLFWLKGSGNFTLHGLSVAYLSGRQSSEGQQFGTYSQDDVDALRAL 148 (550)
Q Consensus 81 -l~~l-~--~~~~~~------~~-~~~g-~ei~~Nl~~Lg~~gv~~i~GlrIa~lgG~~~~~~~~~~~~te~di~~L~~l 148 (550)
...+ . .++..+ +. ..++ ..+-.|.+||.+..+ ++.|++|.+..-. +....|.++...--..|.++
T Consensus 131 f~~~~~k~~~~~~~~p~~s~l~P~a~egv~~lLTN~iYLqD~~v-tv~G~~Iygspw~--p~~~g~~f~l~rg~~~ld~W 207 (305)
T KOG3947|consen 131 FMADLIKDEQDAYYFPGVSKLKPEAYEGVQSLLTNCIYLQDSEV-TVRGVRIYGSPWT--PLLPGWAFNLPRGQSLLDKW 207 (305)
T ss_pred ccchhhccccceecCccccccCccccccccchhceeEEEecCcE-EEEEEEEecCCCC--cccCchhhhhhhhHhhhHHH
Confidence 1100 0 000000 00 0111 236678999998775 7889888854433 21222333332222234445
Q ss_pred hcCCCCccEEEeCCCCccccccccccccccccCCCCCCcHHHHHHHH-HhCCCEEEEccCCCccccccccCCCCcceeEE
Q 008885 149 AEEPGIVDLFLTNEWPSGVTNKAAASDMLVGISDSSNTDSTVSELVA-EIKPRYHIAGSKGVFYAREPYSNVDAVHVTRF 227 (550)
Q Consensus 149 ~~~~~~vDILLTh~wP~gi~~~~~~~~~~~~~~~~~~Gs~~i~~l~~-~lkPRYhf~Gh~~~f~er~Py~~~~~~~~TRF 227 (550)
.....++|||+||.+|.|..+... ..+..+.|+..+-.-++ .+||+||++||.|..|--. +.+.|+|
T Consensus 208 ~~ip~~iDvL~tHtPPlG~gd~~~------~~~gqr~GC~ell~tVe~rvqpk~hVfGhvhe~~Gvt------a~G~t~f 275 (305)
T KOG3947|consen 208 NQIPGGIDVLITHTPPLGHGDLVP------VFSGQRNGCVELLNTVERRVQPKYHVFGHVHEGHGVT------ADGYTTF 275 (305)
T ss_pred hcCccccceeccCCCCCCcchhcc------cccCcccCHHHHHHhHhhccccceEEeeeeecCceee------ecCcccc
Confidence 556789999999999999866432 11125789887666555 4999999999987766643 5678999
Q ss_pred EEcCCC
Q 008885 228 LGLAPV 233 (550)
Q Consensus 228 I~La~~ 233 (550)
||-+-+
T Consensus 276 ina~~C 281 (305)
T KOG3947|consen 276 INAELC 281 (305)
T ss_pred ccHHHh
Confidence 987765
No 21
>cd07402 MPP_GpdQ Enterobacter aerogenes GpdQ and related proteins, metallophosphatase domain. GpdQ (glycerophosphodiesterase Q, also known as Rv0805 in Mycobacterium tuberculosis) is a binuclear metallophosphoesterase from Enterobacter aerogenes that catalyzes the hydrolysis of mono-, di-, and triester substrates, including some organophosphate pesticides and products of the degradation of nerve agents. The GpdQ homolog, Rv0805, has 2',3'-cyclic nucleotide phosphodiesterase activity. GpdQ and Rv0805 belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosa
Probab=99.30 E-value=1.8e-10 Score=114.34 Aligned_cols=197 Identities=16% Similarity=0.123 Sum_probs=121.7
Q ss_pred EEEEEcCCCCC------------hHHHHHHHHHHhhhcCCCcEEEEecCCCCCCh-hhHHHHHHHhcccCCCCccEEEEe
Q 008885 5 RILLCGDVLGR------------LNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSS-ELLDEFMNYVEGRSEIPIPTYFIG 71 (550)
Q Consensus 5 KILv~GDvhG~------------~~~l~~kv~~l~~k~GpfD~li~~GDff~~~~-~~~~~~~~~l~g~~~~p~ptyfv~ 71 (550)
||++++|+|=. ...+-+.++.+++...++|+||++||++.... ..-+.+.+.+ .++++|+|+|+
T Consensus 1 r~~~iSDlH~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~d~vi~~GDl~~~~~~~~~~~~~~~l---~~~~~p~~~v~ 77 (240)
T cd07402 1 LLAQISDLHLRADGEGALLGVDTAASLEAVLAHINALHPRPDLVLVTGDLTDDGSPESYERLRELL---AALPIPVYLLP 77 (240)
T ss_pred CEEEEeCCccCCCCcceecCcCHHHHHHHHHHHHHhcCCCCCEEEECccCCCCCCHHHHHHHHHHH---hhcCCCEEEeC
Confidence 69999999943 22333334555554346899999999976532 2223455555 45689999999
Q ss_pred cCCCChHHHHHHhhccccccCcccCCceecCcEEEcCCCCeEEEcCeEEEEEeCccCCCCCCCCCCCHHHHHHHHHhh-c
Q 008885 72 DYGVGAAKVLLAASKNSANQGFKMDGFKVTDNLFWLKGSGNFTLHGLSVAYLSGRQSSEGQQFGTYSQDDVDALRALA-E 150 (550)
Q Consensus 72 GNhe~~~~~l~~l~~~~~~~~~~~~g~ei~~Nl~~Lg~~gv~~i~GlrIa~lgG~~~~~~~~~~~~te~di~~L~~l~-~ 150 (550)
||||....+...+.. .. ..+ .+. .-.+.++|++|.++....... ....+++++++.|++.. .
T Consensus 78 GNHD~~~~~~~~~~~---------~~---~~~-~~~--~~~~~~~~~~~i~lds~~~~~--~~~~~~~~ql~wL~~~L~~ 140 (240)
T cd07402 78 GNHDDRAAMRAVFPE---------LP---PAP-GFV--QYVVDLGGWRLILLDSSVPGQ--HGGELCAAQLDWLEAALAE 140 (240)
T ss_pred CCCCCHHHHHHhhcc---------cc---ccc-ccc--ceeEecCCEEEEEEeCCCCCC--cCCEECHHHHHHHHHHHHh
Confidence 999964333332210 00 000 000 124467899999997654321 22345677777666532 2
Q ss_pred CCCCccEEEeCCCCccccccccccccccccCCCCCCcHHHHHHHHHh-CCCEEEEccCCCccccccccCCCCcceeEEEE
Q 008885 151 EPGIVDLFLTNEWPSGVTNKAAASDMLVGISDSSNTDSTVSELVAEI-KPRYHIAGSKGVFYAREPYSNVDAVHVTRFLG 229 (550)
Q Consensus 151 ~~~~vDILLTh~wP~gi~~~~~~~~~~~~~~~~~~Gs~~i~~l~~~l-kPRYhf~Gh~~~f~er~Py~~~~~~~~TRFI~ 229 (550)
.....-|+++|.+|........ .. .....+..+.+++.+. +++++|+||.|..+.+ ....+++++
T Consensus 141 ~~~~~~il~~H~pp~~~~~~~~-----~~--~~~~~~~~~~~~l~~~~~v~~v~~GH~H~~~~~-------~~~g~~~~~ 206 (240)
T cd07402 141 APDKPTLVFLHHPPFPVGIAWM-----DA--IGLRNAEALAAVLARHPNVRAILCGHVHRPIDG-------SWGGIPLLT 206 (240)
T ss_pred CCCCCEEEEECCCCccCCchhh-----hh--hhCCCHHHHHHHHhcCCCeeEEEECCcCchHHe-------EECCEEEEE
Confidence 2345679999999987632100 00 0134678888999988 8999999998875442 234588888
Q ss_pred cCCCCC
Q 008885 230 LAPVGN 235 (550)
Q Consensus 230 La~~g~ 235 (550)
.+..+.
T Consensus 207 ~gs~~~ 212 (240)
T cd07402 207 APSTCH 212 (240)
T ss_pred cCccee
Confidence 887764
No 22
>cd01278 aprataxin_related aprataxin related: Aprataxin, a HINT family hydrolase is mutated in ataxia oculomotor apraxia syndrome. All the members of this subgroup have the conserved HxHxHxx (where x is a hydrophobic residue) signature motif. Members of this subgroup are predominantly eukaryotic in origin.
Probab=99.29 E-value=2e-11 Score=105.99 Aligned_cols=95 Identities=18% Similarity=0.116 Sum_probs=72.5
Q ss_pred CCcccCCCCC-C-CcceEEEECCEEEEEecCCCCCCCeEEEEeccccCCCCCCCHHHHHHHHHHHHHHHHHHhhc-----
Q 008885 390 ECWFCLSSPS-V-ESHLIVSVGEYYYCALPKGPLVEDHVLVIPVEHVPNTISTSPECEKELGRFQNSLMMYYKNQ----- 462 (550)
Q Consensus 390 ~C~FC~~~~~-~-~~hliis~g~~~yl~l~kgpl~~gH~lIiP~~H~~s~~~l~~~~~~Ei~~~~~~L~~~~~~~----- 462 (550)
.|.||.+... . .+..||+.++.+++++|..|..+||+||||.+|++++.+++++.++++..+.+.+.+.+.+.
T Consensus 1 ~c~fc~i~~~e~~~~~~iv~~~~~~~a~~~~~p~~~~h~lIiPk~h~~~~~~l~~~~~~~l~~~~~~~~~~l~~~~~~~~ 80 (104)
T cd01278 1 LCHFCDIAKRRDPDPEDQVYEDDRVVVFKDIYPKARHHYLVIPKEHIASLKALTKEDVPLLEHMETVGREKLLRSDNTDP 80 (104)
T ss_pred CCccccCccCCCCCCccEEEeCCCEEEEECCCCCCCceEEEEecCCCCChHHCCHhHHHHHHHHHHHHHHHHHHHcCCCc
Confidence 4999987532 2 24678999999999999999999999999999999999999999999999888777744331
Q ss_pred -CCceEEEeecCCCcCeEEEEEe
Q 008885 463 -GKEAVFFEWLSKRGTHANLQAV 484 (550)
Q Consensus 463 -~~~~v~~E~~~~~~~H~hi~~v 484 (550)
|+++.+.....+...|+|+|+|
T Consensus 81 ~~~n~g~h~~p~~~v~H~H~Hvi 103 (104)
T cd01278 81 SEFRFGFHAPPFTSVSHLHLHVI 103 (104)
T ss_pred cCeEEEeCCCCCcCeeeEEEEee
Confidence 2222111111124679999997
No 23
>cd00468 HIT_like HIT family: HIT (Histidine triad) proteins, named for a motif related to the sequence HxHxH/Qxx (x, a hydrophobic amino acid), are a superfamily of nucleotide hydrolases and transferases, which act on the alpha-phosphate of ribonucleotides. On the basis of sequence, substrate specificity, structure, evolution and mechanism, HIT proteins are classified in the literacture into three major branches: the Hint branch, which consists of adenosine 5' -monophosphoramide hydrolases, the Fhit branch, that consists of diadenosine polyphosphate hydrolases, and the GalT branch consisting of specific nucloside monophosphate transferases. Further sequence analysis reveals several new closely related, yet uncharacterized subgroups.
Probab=99.22 E-value=4.9e-11 Score=99.45 Aligned_cols=80 Identities=18% Similarity=0.175 Sum_probs=63.6
Q ss_pred EEECCEEEEEecCCCCCCCeEEEEeccccCCCCCCCHHHHHHHHHHHHHHHHHHhh-cCC---ceEEEe--ecCCCcCeE
Q 008885 406 VSVGEYYYCALPKGPLVEDHVLVIPVEHVPNTISTSPECEKELGRFQNSLMMYYKN-QGK---EAVFFE--WLSKRGTHA 479 (550)
Q Consensus 406 is~g~~~yl~l~kgpl~~gH~lIiP~~H~~s~~~l~~~~~~Ei~~~~~~L~~~~~~-~~~---~~v~~E--~~~~~~~H~ 479 (550)
|+.++.+++++|..|..+||+||||.+|+.++.+++++++.++....+.+.+.+++ .+. ++++.. ...+...|+
T Consensus 1 ~~e~~~~~a~~~~~p~~~gh~lIipk~H~~~~~~l~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~n~g~~~g~~v~H~ 80 (86)
T cd00468 1 VPDDEHSFAFVNLKPAAPGHVLVCPKRHVETLPDLDEALLADLVITAQRVAAELEKHGNVPSLTVFVNDGAAAGQSVPHV 80 (86)
T ss_pred CeecCcEEEEECCCCCCCCcEEEeCchhhCChhHCCHHHHHHHHHHHHHHHHHHHHhcCCCceEEEEcCCccCCCcCCEE
Confidence 46789999999999999999999999999999999999999999888877776653 232 322222 122346899
Q ss_pred EEEEee
Q 008885 480 NLQAVP 485 (550)
Q Consensus 480 hi~~vP 485 (550)
|+|+||
T Consensus 81 H~hiiP 86 (86)
T cd00468 81 HLHVLP 86 (86)
T ss_pred EEEeCC
Confidence 999998
No 24
>PF00149 Metallophos: Calcineurin-like phosphoesterase; InterPro: IPR004843 This domain is found in a diverse range of phosphoesterases [], including protein phosphoserine phosphatases, nucleotidases, sphingomyelin phosphodiesterases and 2'-3' cAMP phosphodiesterases, as well as nucleases such as bacterial SbcD or yeast MRE11. The most conserved regions in this domain centre around the metal chelating residues.; GO: 0016787 hydrolase activity; PDB: 2IAE_C 3DW8_F 3FGA_C 2IE4_C 2NYM_C 2NYL_C 3K7V_C 2NPP_C 2IE3_C 3K7W_C ....
Probab=99.19 E-value=6.8e-11 Score=107.32 Aligned_cols=192 Identities=12% Similarity=0.101 Sum_probs=97.8
Q ss_pred CEEEEEcCCCCChHHH---HHHHHHHhhhcCCCcEEEEecCCCCCChhhHHHHHHH--hcccCCCCccEEEEecCCCChH
Q 008885 4 PRILLCGDVLGRLNQL---FKRVQSVNKSAGPFDAVLCVGQFFPDSSELLDEFMNY--VEGRSEIPIPTYFIGDYGVGAA 78 (550)
Q Consensus 4 ~KILv~GDvhG~~~~l---~~kv~~l~~k~GpfD~li~~GDff~~~~~~~~~~~~~--l~g~~~~p~ptyfv~GNhe~~~ 78 (550)
|||+++||+|+..... ...+.....+. +.|+||++||++............. .......++|+|++.||||...
T Consensus 1 ~ri~~isD~H~~~~~~~~~~~~~~~~~~~~-~~d~ii~~GD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GNHD~~~ 79 (200)
T PF00149_consen 1 MRILVISDLHGGYDDDSDAFRKLDEIAAEN-KPDFIIFLGDLVDGGNPSEEWRAQFWFFIRLLNPKIPVYFILGNHDYYS 79 (200)
T ss_dssp EEEEEEEBBTTTHHHHCHHHHHHHHHHHHT-TTSEEEEESTSSSSSSHHHHHHHHHHHHHHHHHTTTTEEEEE-TTSSHH
T ss_pred CeEEEEcCCCCCCcchhHHHHHHHHHhccC-CCCEEEeeccccccccccccchhhhccchhhhhccccccccccccccce
Confidence 6999999999998876 44444444444 5799999999976543322222111 1112557799999999999764
Q ss_pred HHHHHhhccccccCcccCCceecCcEEEcCCCC-eEE-EcCeEEEEEeCccCCCCCCCCCCCHHHHH-HHHHhhcCCCCc
Q 008885 79 KVLLAASKNSANQGFKMDGFKVTDNLFWLKGSG-NFT-LHGLSVAYLSGRQSSEGQQFGTYSQDDVD-ALRALAEEPGIV 155 (550)
Q Consensus 79 ~~l~~l~~~~~~~~~~~~g~ei~~Nl~~Lg~~g-v~~-i~GlrIa~lgG~~~~~~~~~~~~te~di~-~L~~l~~~~~~v 155 (550)
........... ........+..+..... ... .............. ... ......... ....+.......
T Consensus 80 ~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~ 151 (200)
T PF00149_consen 80 GNSFYGFYDYQ-----FEDYYGNYNYYYSYFNNKVIFDNDNFWFNSGNNEYP-DYG--MEAQQEWWLWLLLLLEAKNDDP 151 (200)
T ss_dssp HHHHHHHHHHH-----HSSEEECSSEEECTESSEEEEEETTEEEEEHCCHTH-HSE--HHHHHHHHHHHHHHHHEEEESE
T ss_pred ecccccccccc-----ccccccccccccccCcceeeeccccccccccccccc-ccc--cccchhcccccccccccccccc
Confidence 32221110000 00001111111111011 111 11111111111000 000 000000011 111122234568
Q ss_pred cEEEeCCCCccccccccccccccccCCCCCCcHHHHHHHHHhCCCEEEEccCCCc
Q 008885 156 DLFLTNEWPSGVTNKAAASDMLVGISDSSNTDSTVSELVAEIKPRYHIAGSKGVF 210 (550)
Q Consensus 156 DILLTh~wP~gi~~~~~~~~~~~~~~~~~~Gs~~i~~l~~~lkPRYhf~Gh~~~f 210 (550)
.|+++|.+|.......... .....+...+..+.+..+++++|+||.|.|
T Consensus 152 ~iv~~H~p~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~v~~~~~GH~H~~ 200 (200)
T PF00149_consen 152 VIVFTHHPPYSSSSDSSSY------GNESKGREALEELLKKYNVDLVLSGHTHRY 200 (200)
T ss_dssp EEEEESSSSSTTSSSTHHH------SSEEEHHHHHHHHHHHTTCSEEEEESSSSE
T ss_pred eeEEEecCCCCcccccccc------chhhccHHHHHHHHhhCCCCEEEeCceecC
Confidence 8999999999875422100 001356788999999999999999999864
No 25
>KOG3275 consensus Zinc-binding protein of the histidine triad (HIT) family [Signal transduction mechanisms]
Probab=99.19 E-value=8.7e-11 Score=100.96 Aligned_cols=97 Identities=16% Similarity=0.155 Sum_probs=79.7
Q ss_pred CCCCcccCCCC-CCCcceEEEECCEEEEEecCCCCCCCeEEEEeccc---cCCCCCCCHHHHHHHHHHHHHHHHHHh-hc
Q 008885 388 SKECWFCLSSP-SVESHLIVSVGEYYYCALPKGPLVEDHVLVIPVEH---VPNTISTSPECEKELGRFQNSLMMYYK-NQ 462 (550)
Q Consensus 388 ~~~C~FC~~~~-~~~~hliis~g~~~yl~l~kgpl~~gH~lIiP~~H---~~s~~~l~~~~~~Ei~~~~~~L~~~~~-~~ 462 (550)
...|.||.+-. +++ .-||++++.|+++.+..|..|||.||||..| .+...+.+++....++-..+.+.+.+. ..
T Consensus 15 ~~~tIF~kIi~keIP-a~ii~Edd~~lAF~Di~Pqap~HfLvIPK~hi~~~s~aed~~~e~Lg~ll~~~k~vak~~Gl~~ 93 (127)
T KOG3275|consen 15 AAPTIFCKIIRKEIP-AKIIFEDDRCLAFHDIAPQAPGHFLVIPKKHITQLSKAEDRDDELLGHLLPVAKKVAKALGLED 93 (127)
T ss_pred CCCcEeeeeecccCC-cceEeeccceEEEEecCCCCCceEEEeecccccchhhcccCCHHHHHHHHHHHHHHHHHhCccc
Confidence 46899998764 344 3588999999999999999999999999999 555667788999999988888888777 56
Q ss_pred CCceEEEe-e-cCCCcCeEEEEEee
Q 008885 463 GKEAVFFE-W-LSKRGTHANLQAVP 485 (550)
Q Consensus 463 ~~~~v~~E-~-~~~~~~H~hi~~vP 485 (550)
|+.+|..+ . ..+.+.|+|+|++|
T Consensus 94 gYrvv~NnG~~g~QsV~HvH~Hvlg 118 (127)
T KOG3275|consen 94 GYRVVQNNGKDGHQSVYHVHLHVLG 118 (127)
T ss_pred ceeEEEcCCcccceEEEEEEEEEeC
Confidence 78888776 2 23447899999999
No 26
>cd07393 MPP_DR1119 Deinococcus radiodurans DR1119 and related proteins, metallophosphatase domain. DR1119 is an uncharacterized Deinococcus radiodurans protein with a metallophosphatase domain. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordinat
Probab=99.09 E-value=5.1e-09 Score=104.16 Aligned_cols=177 Identities=12% Similarity=0.104 Sum_probs=100.9
Q ss_pred EEEEcCCCCC---------hH----HHHHHHHHH-hhhcCCCcEEEEecCCCCCCh-hhHHHHHHHhcccCCCCccEEEE
Q 008885 6 ILLCGDVLGR---------LN----QLFKRVQSV-NKSAGPFDAVLCVGQFFPDSS-ELLDEFMNYVEGRSEIPIPTYFI 70 (550)
Q Consensus 6 ILv~GDvhG~---------~~----~l~~kv~~l-~~k~GpfD~li~~GDff~~~~-~~~~~~~~~l~g~~~~p~ptyfv 70 (550)
|.+++|.|-. +. ++.+++.+. ++-..+.|+||++||+..... .......+++ ...+.|+|+|
T Consensus 1 ~~~~sDlHl~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~D~viiaGDl~~~~~~~~~~~~l~~l---~~l~~~v~~V 77 (232)
T cd07393 1 IFAIADLHLNLDPTKPMDVFGPEWKNHTEKIKENWDNVVAPEDIVLIPGDISWAMKLEEAKLDLAWI---DALPGTKVLL 77 (232)
T ss_pred CeEEEeeccCCCCCCCCcccCccHHHHHHHHHHHHHhcCCCCCEEEEcCCCccCCChHHHHHHHHHH---HhCCCCeEEE
Confidence 5789999965 22 333333333 222236899999999974321 1122333444 4456789999
Q ss_pred ecCCCCh----HHHHHHhhccccccCcccCCceecCcEEEcCCCCeEEEcCeEEEEEeC-ccCCCCC-----C-C----C
Q 008885 71 GDYGVGA----AKVLLAASKNSANQGFKMDGFKVTDNLFWLKGSGNFTLHGLSVAYLSG-RQSSEGQ-----Q-F----G 135 (550)
Q Consensus 71 ~GNhe~~----~~~l~~l~~~~~~~~~~~~g~ei~~Nl~~Lg~~gv~~i~GlrIa~lgG-~~~~~~~-----~-~----~ 135 (550)
+||||-. ..+.+.+. ++.+++.....+.+++++|+|+.+ +.+.... + . .
T Consensus 78 ~GNHD~~~~~~~~~~~~l~----------------~~~~~~~~n~~~~~~~i~i~G~~~~~~~~~~~~~~~~~~~~~~~~ 141 (232)
T cd07393 78 KGNHDYWWGSASKLRKALE----------------ESRLALLFNNAYIDDDVAICGTRGWDNPGNPWPPINETLKVEEDE 141 (232)
T ss_pred eCCccccCCCHHHHHHHHH----------------hcCeEEeccCcEEECCEEEEEEEeeCCCCCccccccccccchhHH
Confidence 9999841 22222222 222222223455688999998864 2221110 0 0 0
Q ss_pred CCCHHHHHHHHH----hhcC-CCCccEEEeCCCCccccccccccccccccCCCCCCcHHHHHHHHHhCCCEEEEccCCCc
Q 008885 136 TYSQDDVDALRA----LAEE-PGIVDLFLTNEWPSGVTNKAAASDMLVGISDSSNTDSTVSELVAEIKPRYHIAGSKGVF 210 (550)
Q Consensus 136 ~~te~di~~L~~----l~~~-~~~vDILLTh~wP~gi~~~~~~~~~~~~~~~~~~Gs~~i~~l~~~lkPRYhf~Gh~~~f 210 (550)
.+..++...|.. .... ..+.-|+++|.+|.... .++..+.+++++..+++.|+||.|.+
T Consensus 142 ~~~~~~l~~l~~~L~~~~~~~~~~~~i~~~H~p~~~~~----------------~~~~~~~~~~~~~~v~~vl~GH~H~~ 205 (232)
T cd07393 142 KIFERELERLELSLKAAKKREKEKIKIVMLHYPPANEN----------------GDDSPISKLIEEYGVDICVYGHLHGV 205 (232)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCcCCC----------------CCHHHHHHHHHHcCCCEEEECCCCCC
Confidence 112233333332 1111 12367999999986541 23456778888889999999999988
Q ss_pred ccccccc
Q 008885 211 YAREPYS 217 (550)
Q Consensus 211 ~er~Py~ 217 (550)
....||.
T Consensus 206 ~~~~~~~ 212 (232)
T cd07393 206 GRDRAIN 212 (232)
T ss_pred ccccccc
Confidence 7777774
No 27
>PF12850 Metallophos_2: Calcineurin-like phosphoesterase superfamily domain; InterPro: IPR024654 Domains in this entry are members of the calcineurin-like phosphoesterase domain superfamily [].; PDB: 2GJU_A 1Z2W_A 1Z2X_B 3PSO_B 3PSN_B 1W24_A 2R17_B 3QFN_B 3QFO_A 3QFM_A ....
Probab=99.08 E-value=9.5e-10 Score=101.26 Aligned_cols=141 Identities=16% Similarity=0.241 Sum_probs=88.6
Q ss_pred CEEEEEcCCCCChHHHHHHHHHHhhhcCCCcEEEEecCCCCCChhhHHHHHHHhcccCCCCccEEEEecCCCChHHHHHH
Q 008885 4 PRILLCGDVLGRLNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSSELLDEFMNYVEGRSEIPIPTYFIGDYGVGAAKVLLA 83 (550)
Q Consensus 4 ~KILv~GDvhG~~~~l~~kv~~l~~k~GpfD~li~~GDff~~~~~~~~~~~~~l~g~~~~p~ptyfv~GNhe~~~~~l~~ 83 (550)
|||+++||+|++.+.+-+.++.+ + ..|+||++||++.. .++.+.+. ++ |+++|.||||... +..
T Consensus 1 Mki~~~sD~H~~~~~~~~~~~~~---~-~~d~vi~~GDi~~~-----~~~~~~~~---~~--~~~~v~GNHD~~~--~~~ 64 (156)
T PF12850_consen 1 MKIAVISDLHGNLDALEAVLEYI---N-EPDFVIILGDIFDP-----EEVLELLR---DI--PVYVVRGNHDNWA--FPN 64 (156)
T ss_dssp EEEEEEE--TTTHHHHHHHHHHH---T-TESEEEEES-SCSH-----HHHHHHHH---HH--EEEEE--CCHSTH--HHS
T ss_pred CEEEEEeCCCCChhHHHHHHHHh---c-CCCEEEECCCchhH-----HHHHHHHh---cC--CEEEEeCCccccc--chh
Confidence 89999999999998765555555 2 37999999999872 44555553 22 8999999998532 111
Q ss_pred hhccccccCcccCCceecCcEEEcCCCCeEEEcCeEEEEEeCccCCCCCCCCCCCHHHHHHHHHhhcCCCCccEEEeCCC
Q 008885 84 ASKNSANQGFKMDGFKVTDNLFWLKGSGNFTLHGLSVAYLSGRQSSEGQQFGTYSQDDVDALRALAEEPGIVDLFLTNEW 163 (550)
Q Consensus 84 l~~~~~~~~~~~~g~ei~~Nl~~Lg~~gv~~i~GlrIa~lgG~~~~~~~~~~~~te~di~~L~~l~~~~~~vDILLTh~w 163 (550)
.. ..+. +...-..++ .+..|+++|.-
T Consensus 65 ~~-----------~~~~------~~~~~~~~~-------------------------------------~~~~i~~~H~~ 90 (156)
T PF12850_consen 65 EN-----------DEEY------LLDALRLTI-------------------------------------DGFKILLSHGH 90 (156)
T ss_dssp EE-----------CTCS------SHSEEEEEE-------------------------------------TTEEEEEESST
T ss_pred hh-----------hccc------cccceeeee-------------------------------------cCCeEEEECCC
Confidence 00 0001 000001111 24678888887
Q ss_pred CccccccccccccccccCCCCCCcHHHHHHHHHhCCCEEEEccCCCccccccccCCCCcceeEEEEcCCCCCcc
Q 008885 164 PSGVTNKAAASDMLVGISDSSNTDSTVSELVAEIKPRYHIAGSKGVFYAREPYSNVDAVHVTRFLGLAPVGNKE 237 (550)
Q Consensus 164 P~gi~~~~~~~~~~~~~~~~~~Gs~~i~~l~~~lkPRYhf~Gh~~~f~er~Py~~~~~~~~TRFI~La~~g~~~ 237 (550)
|..+. .+...+.+++...+++++|+||.|..+... ...+.++++|.++...
T Consensus 91 ~~~~~----------------~~~~~~~~~~~~~~~~~~~~GH~H~~~~~~-------~~~~~~~~~Gs~~~~~ 141 (156)
T PF12850_consen 91 PYDVQ----------------WDPAELREILSRENVDLVLHGHTHRPQVFK-------IGGIHVINPGSIGGPR 141 (156)
T ss_dssp SSSST----------------TTHHHHHHHHHHTTSSEEEESSSSSEEEEE-------ETTEEEEEE-GSSS-S
T ss_pred Ccccc----------------cChhhhhhhhcccCCCEEEcCCcccceEEE-------ECCEEEEECCcCCCCC
Confidence 76642 345567788889999999999998866642 3469999999998643
No 28
>cd07404 MPP_MS158 Microscilla MS158 and related proteins, metallophosphatase domain. MS158 is an uncharacterized Microscilla protein with a metallophosphatase domain. Microscilla proteins MS152, and MS153 are also included in this family. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is t
Probab=99.06 E-value=1.4e-09 Score=102.08 Aligned_cols=151 Identities=9% Similarity=0.027 Sum_probs=86.3
Q ss_pred EEEEcCCCCChHHHHHHHHHHhhhcCCCcEEEEecCCCCCChhhHHHHHHHhcccCCCCccEEEEecCCCChHHHHHHhh
Q 008885 6 ILLCGDVLGRLNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSSELLDEFMNYVEGRSEIPIPTYFIGDYGVGAAKVLLAAS 85 (550)
Q Consensus 6 ILv~GDvhG~~~~l~~kv~~l~~k~GpfD~li~~GDff~~~~~~~~~~~~~l~g~~~~p~ptyfv~GNhe~~~~~l~~l~ 85 (550)
|++++|+|+++......+.+.. ...++|+|+++||++...... .+..++ .....+.|+|+|+||||.
T Consensus 1 ~~~iSDlH~~~~~~~~~~~~~~-~~~~~d~li~~GDi~~~~~~~--~~~~~~-~~~~~~~~v~~v~GNHD~--------- 67 (166)
T cd07404 1 IQYLSDLHLEFEDNLADLLNFP-IAPDADILVLAGDIGYLTDAP--RFAPLL-LALKGFEPVIYVPGNHEF--------- 67 (166)
T ss_pred CceEccccccCccccccccccC-CCCCCCEEEECCCCCCCcchH--HHHHHH-HhhcCCccEEEeCCCcce---------
Confidence 5789999999865433321111 223689999999998643221 111111 124567899999999962
Q ss_pred ccccccCcccCCceecCcEEEcCCCCeEEEcCeEEEEEeCccCCCCCCCCCCCHHHHHHHHHhhcCCCCccEEEeCCCCc
Q 008885 86 KNSANQGFKMDGFKVTDNLFWLKGSGNFTLHGLSVAYLSGRQSSEGQQFGTYSQDDVDALRALAEEPGIVDLFLTNEWPS 165 (550)
Q Consensus 86 ~~~~~~~~~~~g~ei~~Nl~~Lg~~gv~~i~GlrIa~lgG~~~~~~~~~~~~te~di~~L~~l~~~~~~vDILLTh~wP~ 165 (550)
+ ++|.|.++-.. ...++++. +........+..|++||-+|.
T Consensus 68 --------------------~-----------~~~~G~~~w~~-----~~~~~~~~---~~~~~~d~~~~~vv~~HhpP~ 108 (166)
T cd07404 68 --------------------Y-----------VRIIGTTLWSD-----ISLFGEAA---ARMRMNDFRGKTVVVTHHAPS 108 (166)
T ss_pred --------------------E-----------EEEEeeecccc-----cCccchHH---HHhCCCCCCCCEEEEeCCCCC
Confidence 0 33444332111 11222332 222222334678999999998
Q ss_pred cccccccccccccccCCCCCCcHHHHHHHHHhCCCEEEEccCCCccc
Q 008885 166 GVTNKAAASDMLVGISDSSNTDSTVSELVAEIKPRYHIAGSKGVFYA 212 (550)
Q Consensus 166 gi~~~~~~~~~~~~~~~~~~Gs~~i~~l~~~lkPRYhf~Gh~~~f~e 212 (550)
........ ..... ...++..+.++++..+++++||||.|.-+.
T Consensus 109 ~~~~~~~~---~~~~~-~~~~~~~l~~~~~~~~v~~~i~GH~H~~~~ 151 (166)
T cd07404 109 PLSLAPQY---GDSLV-NAAFAVDLDDLILADPIDLWIHGHTHFNFD 151 (166)
T ss_pred ccccCccc---cCCCc-chhhhhccHhHHhhcCCCEEEECCccccce
Confidence 75321100 00100 113455677888888999999999886544
No 29
>TIGR00040 yfcE phosphoesterase, MJ0936 family. Members of this largely uncharacterized family share a motif approximating DXH(X25)GDXXD(X25)GNHD as found in several phosphoesterases, including the nucleases SbcD and Mre11, and a family of uncharacterized archaeal putative phosphoesterases described by TIGR00024. In this family, the His residue in GNHD portion of the motif is not conserved. The member MJ0936, one of two from Methanococcus jannaschii, was shown (PubMed:15128743) to act on model phosphodiesterase substrates; a divalent cation was required.
Probab=99.05 E-value=3.8e-09 Score=98.57 Aligned_cols=63 Identities=17% Similarity=0.200 Sum_probs=43.7
Q ss_pred CEEEEEcCCCCChHHHHHHHHHHhhhcCCCcEEEEecCCCCCChhhHHHHHHHhcccCCCCccEEEEecCCCC
Q 008885 4 PRILLCGDVLGRLNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSSELLDEFMNYVEGRSEIPIPTYFIGDYGVG 76 (550)
Q Consensus 4 ~KILv~GDvhG~~~~l~~kv~~l~~k~GpfD~li~~GDff~~~~~~~~~~~~~l~g~~~~p~ptyfv~GNhe~ 76 (550)
|||++++|+||+...+-..++.+. .....|.||++||++.. ++.+++ .+...|+++|.||||.
T Consensus 1 m~i~viSD~H~~~~~~~~~~~~~~-~~~~~d~ii~~GD~~~~------~~~~~l---~~~~~~~~~V~GN~D~ 63 (158)
T TIGR00040 1 MKILVISDTHGPLRATELPVELFN-LESNVDLVIHAGDLTSP------FVLKEF---EDLAAKVIAVRGNNDG 63 (158)
T ss_pred CEEEEEecccCCcchhHhHHHHHh-hccCCCEEEEcCCCCCH------HHHHHH---HHhCCceEEEccCCCc
Confidence 799999999999865433233333 33258999999999841 233343 3345689999999985
No 30
>cd07403 MPP_TTHA0053 Thermus thermophilus TTHA0053 and related proteins, metallophosphatase domain. TTHA0053 is an uncharacterized Thermus thermophilus protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=99.04 E-value=2.7e-09 Score=96.52 Aligned_cols=68 Identities=18% Similarity=0.290 Sum_probs=49.8
Q ss_pred ccEEEeCCCCccccccccccccccccCCCCCCcHHHHHHHHHhCCCEEEEccCCCccccccccCCCCcceeEEEEcCCC
Q 008885 155 VDLFLTNEWPSGVTNKAAASDMLVGISDSSNTDSTVSELVAEIKPRYHIAGSKGVFYAREPYSNVDAVHVTRFLGLAPV 233 (550)
Q Consensus 155 vDILLTh~wP~gi~~~~~~~~~~~~~~~~~~Gs~~i~~l~~~lkPRYhf~Gh~~~f~er~Py~~~~~~~~TRFI~La~~ 233 (550)
++||++|.||.++..... ....|+..+.+++.+.+|+++|+||.|..+...- + ......|++||.+-+
T Consensus 57 ~~Ilv~H~pp~~~~~~~~---------~~~~g~~~l~~~l~~~~~~~vl~GH~H~~~~~~~-~-~~~~~~t~~~n~~~~ 124 (129)
T cd07403 57 VDILLTHAPPAGIGDGED---------FAHRGFEAFLDFIDRFRPKLFIHGHTHLNYGYQL-R-IRRVGDTTVINAYGY 124 (129)
T ss_pred cCEEEECCCCCcCcCccc---------ccccCHHHHHHHHHHHCCcEEEEcCcCCCcCccc-c-ccccCCEEEEeCCcE
Confidence 489999999988753211 1357899999999999999999999886554210 0 014678999998754
No 31
>PRK11148 cyclic 3',5'-adenosine monophosphate phosphodiesterase; Provisional
Probab=99.00 E-value=3.3e-08 Score=100.73 Aligned_cols=195 Identities=15% Similarity=0.153 Sum_probs=107.0
Q ss_pred CCEEEEEcCCC-CC-----------hHHHHHHHHHHhhhcCCCcEEEEecCCCCCCh-hhHHHHHHHhcccCCCCccEEE
Q 008885 3 PPRILLCGDVL-GR-----------LNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSS-ELLDEFMNYVEGRSEIPIPTYF 69 (550)
Q Consensus 3 ~~KILv~GDvh-G~-----------~~~l~~kv~~l~~k~GpfD~li~~GDff~~~~-~~~~~~~~~l~g~~~~p~ptyf 69 (550)
+|||+.++|+| .. .+.+-+.++.+++...+.|+||++||+....+ +.-+.+.+.+ .++++|+|+
T Consensus 14 ~~~i~~iSD~Hl~~~~~~~~~~~~~~~~l~~~i~~i~~~~~~~D~vvitGDl~~~~~~~~~~~~~~~l---~~l~~Pv~~ 90 (275)
T PRK11148 14 RVRILQITDTHLFADEHETLLGVNTWESYQAVLEAIRAQQHEFDLIVATGDLAQDHSSEAYQHFAEGI---APLRKPCVW 90 (275)
T ss_pred CEEEEEEcCcccCCCCCCceeccCHHHHHHHHHHHHHhhCCCCCEEEECCCCCCCCCHHHHHHHHHHH---hhcCCcEEE
Confidence 68999999999 11 12233334555544346899999999976432 2222344444 567899999
Q ss_pred EecCCCChHHHHHHhhccccccCcccCCceecCcEEEcCCCCeEEEcCeEEEEEeCccCCCCCCCCCCCHHHHHHHHHhh
Q 008885 70 IGDYGVGAAKVLLAASKNSANQGFKMDGFKVTDNLFWLKGSGNFTLHGLSVAYLSGRQSSEGQQFGTYSQDDVDALRALA 149 (550)
Q Consensus 70 v~GNhe~~~~~l~~l~~~~~~~~~~~~g~ei~~Nl~~Lg~~gv~~i~GlrIa~lgG~~~~~~~~~~~~te~di~~L~~l~ 149 (550)
++||||....+.+.+... + +.++ ..++..++.+|..|..... ....+.+.+++++-|++..
T Consensus 91 v~GNHD~~~~~~~~~~~~---------~--~~~~------~~~~~~~~~~~i~Lds~~~--g~~~G~l~~~ql~wL~~~L 151 (275)
T PRK11148 91 LPGNHDFQPAMYSALQDA---------G--ISPA------KHVLIGEHWQILLLDSQVF--GVPHGELSEYQLEWLERKL 151 (275)
T ss_pred eCCCCCChHHHHHHHhhc---------C--CCcc------ceEEecCCEEEEEecCCCC--CCcCCEeCHHHHHHHHHHH
Confidence 999999744443333210 0 1111 0111223456666654321 1112456778777777532
Q ss_pred -cCCCCccEEEeCCCCccccc-cccccccccccCCCCCCcHHHHHHHHHh-CCCEEEEccCCCccccccccCCCCcceeE
Q 008885 150 -EEPGIVDLFLTNEWPSGVTN-KAAASDMLVGISDSSNTDSTVSELVAEI-KPRYHIAGSKGVFYAREPYSNVDAVHVTR 226 (550)
Q Consensus 150 -~~~~~vDILLTh~wP~gi~~-~~~~~~~~~~~~~~~~Gs~~i~~l~~~l-kPRYhf~Gh~~~f~er~Py~~~~~~~~TR 226 (550)
......-|++.|..|..... ..+ . .....+..+.+++++. +.+.+|+||.|..+.. ....++
T Consensus 152 ~~~~~~~~vv~~hH~P~~~~~~~~d------~--~~l~n~~~l~~ll~~~~~v~~vl~GH~H~~~~~-------~~~gi~ 216 (275)
T PRK11148 152 ADAPERHTLVLLHHHPLPAGCAWLD------Q--HSLRNAHELAEVLAKFPNVKAILCGHIHQELDL-------DWNGRR 216 (275)
T ss_pred hhCCCCCeEEEEcCCCCCCCcchhh------c--cCCCCHHHHHHHHhcCCCceEEEecccChHHhc-------eECCEE
Confidence 22223334545544432211 001 0 0124567888999886 7899999998864431 123456
Q ss_pred EEEcCCCC
Q 008885 227 FLGLAPVG 234 (550)
Q Consensus 227 FI~La~~g 234 (550)
++..+..+
T Consensus 217 ~~~~ps~~ 224 (275)
T PRK11148 217 LLATPSTC 224 (275)
T ss_pred EEEcCCCc
Confidence 66554443
No 32
>TIGR00209 galT_1 galactose-1-phosphate uridylyltransferase, family 1. This enzyme is involved in glucose and galactose interconversion. This model describes one of two extremely distantly related branches of the model pfam01087 from PFAM.
Probab=98.93 E-value=2.7e-09 Score=111.86 Aligned_cols=99 Identities=13% Similarity=0.076 Sum_probs=77.7
Q ss_pred CCCcccCCC-CCC-CcceEEEECCEEEEEecCCCCCCCeEEEEeccccCCCCCCCHHHHHHHHHHHHHHHHHHhh-c---
Q 008885 389 KECWFCLSS-PSV-ESHLIVSVGEYYYCALPKGPLVEDHVLVIPVEHVPNTISTSPECEKELGRFQNSLMMYYKN-Q--- 462 (550)
Q Consensus 389 ~~C~FC~~~-~~~-~~hliis~g~~~yl~l~kgpl~~gH~lIiP~~H~~s~~~l~~~~~~Ei~~~~~~L~~~~~~-~--- 462 (550)
..|.||.+- ... ....||+.++.+++++|..|..+||+||||.+|+.++.+++++++.+|....+.+.+.+.+ .
T Consensus 194 g~clfcdIi~~E~~~~~riV~End~fvAf~p~~p~~Pgh~lIiPKrH~~~~~dl~d~e~~~La~~lk~v~~~l~~~~~~~ 273 (347)
T TIGR00209 194 KSPMLVDYVKRELADKSRTVVETEHWIAVVPYWAIWPFETLLLPKAHVLRITDLTDAQRSDLALILKKLTSKYDNLFETS 273 (347)
T ss_pred CCccHHHHHHhHhhcCCeEEEECCCEEEEeccCCCCCCeEEEeeccCCCChhhCCHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 479999864 233 2457899999999999999999999999999999999999999999999888877776653 2
Q ss_pred -CCceEEEe-ecCC---CcCeEEEEEeecC
Q 008885 463 -GKEAVFFE-WLSK---RGTHANLQAVPIP 487 (550)
Q Consensus 463 -~~~~v~~E-~~~~---~~~H~hi~~vPvp 487 (550)
+++.++.. -.+. ...|+|+|++|.-
T Consensus 274 ~pYn~~~h~~p~~~~~~~~~H~HihiiPrl 303 (347)
T TIGR00209 274 FPYSMGWHGAPFNGEENQHWQLHAHFYPPL 303 (347)
T ss_pred CCcceeEEecccCCCCCcEEEEEEEEeCCc
Confidence 35555544 1222 2358999999973
No 33
>cd00841 MPP_YfcE Escherichia coli YfcE and related proteins, metallophosphatase domain. YfcE is a manganase-dependent metallophosphatase, found in bacteria and archaea, that cleaves bis-p-nitrophenyl phosphate, thymidine 5'-monophosphate-p-nitrophenyl ester, and p-nitrophenyl phosphorylcholine, but is unable to hydrolyze 2',3 ' or 3',5' cyclic nucleic phosphodiesters, and various phosphomonoesters, including p-nitrophenyl phosphate. This family also includes the Bacilus subtilis YsnB and Methanococcus jannaschii MJ0936 proteins. This domain family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid ph
Probab=98.92 E-value=2.6e-08 Score=92.30 Aligned_cols=133 Identities=18% Similarity=0.159 Sum_probs=83.2
Q ss_pred EEEEEcCCCCChHHHHHHHHHHhhhcCCCcEEEEecCCCCCChhhHHHHHHHhcccCCCCccEEEEecCCCChHHHHHHh
Q 008885 5 RILLCGDVLGRLNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSSELLDEFMNYVEGRSEIPIPTYFIGDYGVGAAKVLLAA 84 (550)
Q Consensus 5 KILv~GDvhG~~~~l~~kv~~l~~k~GpfD~li~~GDff~~~~~~~~~~~~~l~g~~~~p~ptyfv~GNhe~~~~~l~~l 84 (550)
||++++|+||+.+.+.+.++.+. ..|.||++||+....... . .....|+++|.||||... .
T Consensus 1 ~i~~isD~H~~~~~~~~~~~~~~----~~d~ii~~GD~~~~~~~~--~--------~~~~~~~~~V~GNhD~~~-~---- 61 (155)
T cd00841 1 KIGVISDTHGSLELLEKALELFG----DVDLIIHAGDVLYPGPLN--E--------LELKAPVIAVRGNCDGEV-D---- 61 (155)
T ss_pred CEEEEecCCCCHHHHHHHHHHhc----CCCEEEECCccccccccc--h--------hhcCCcEEEEeCCCCCcC-C----
Confidence 69999999999866554444432 279999999996542211 1 123468999999997420 0
Q ss_pred hccccccCcccCCceecCcEEEcCCCCeEEEcCeEEEEEeCccCCCCCCCCCCCHHHHHHHHHhhcCCCCccEEEeCCCC
Q 008885 85 SKNSANQGFKMDGFKVTDNLFWLKGSGNFTLHGLSVAYLSGRQSSEGQQFGTYSQDDVDALRALAEEPGIVDLFLTNEWP 164 (550)
Q Consensus 85 ~~~~~~~~~~~~g~ei~~Nl~~Lg~~gv~~i~GlrIa~lgG~~~~~~~~~~~~te~di~~L~~l~~~~~~vDILLTh~wP 164 (550)
+..|....+++++| .-|+++|.++
T Consensus 62 -------------------~~~~p~~~~~~~~g-------------------------------------~~i~v~Hg~~ 85 (155)
T cd00841 62 -------------------FPILPEEAVLEIGG-------------------------------------KRIFLTHGHL 85 (155)
T ss_pred -------------------cccCCceEEEEECC-------------------------------------EEEEEECCcc
Confidence 00011011222333 4567777776
Q ss_pred ccccccccccccccccCCCCCCcHHHHHHHHHhCCCEEEEccCCCccccccccCCCCcceeEEEEcCCCCCc
Q 008885 165 SGVTNKAAASDMLVGISDSSNTDSTVSELVAEIKPRYHIAGSKGVFYAREPYSNVDAVHVTRFLGLAPVGNK 236 (550)
Q Consensus 165 ~gi~~~~~~~~~~~~~~~~~~Gs~~i~~l~~~lkPRYhf~Gh~~~f~er~Py~~~~~~~~TRFI~La~~g~~ 236 (550)
...... ... .+++......|+++||.|..+.+ ....+++||.|+++.+
T Consensus 86 ~~~~~~----------------~~~-~~~~~~~~~d~vi~GHtH~~~~~-------~~~~~~~inpGs~~~~ 133 (155)
T cd00841 86 YGVKNG----------------LDR-LYLAKEGGADVVLYGHTHIPVIE-------KIGGVLLLNPGSLSLP 133 (155)
T ss_pred cccccc----------------hhh-hhhhhhcCCCEEEECcccCCccE-------EECCEEEEeCCCccCc
Confidence 554210 011 45566778899999999876553 2346899999999865
No 34
>PRK11720 galactose-1-phosphate uridylyltransferase; Provisional
Probab=98.90 E-value=3.8e-09 Score=110.77 Aligned_cols=99 Identities=13% Similarity=0.048 Sum_probs=77.3
Q ss_pred CCCcccCCC-CCCC-cceEEEECCEEEEEecCCCCCCCeEEEEeccccCCCCCCCHHHHHHHHHHHHHHHHHHhh-c---
Q 008885 389 KECWFCLSS-PSVE-SHLIVSVGEYYYCALPKGPLVEDHVLVIPVEHVPNTISTSPECEKELGRFQNSLMMYYKN-Q--- 462 (550)
Q Consensus 389 ~~C~FC~~~-~~~~-~hliis~g~~~yl~l~kgpl~~gH~lIiP~~H~~s~~~l~~~~~~Ei~~~~~~L~~~~~~-~--- 462 (550)
..|.||.+- .+.+ ...||+.++++++++|..|..|||+||||.+|+.++.+++++++.+|....+.+.+.+.+ .
T Consensus 194 g~Clfcdii~~E~~~~~RiV~End~fvAf~p~~p~~P~h~lIiPKrH~~~~~dl~dee~~~La~~lk~v~~~l~~~~~~~ 273 (346)
T PRK11720 194 GSPLLVDYVQRELADGERIVVETEHWLAVVPYWAAWPFETLLLPKAHVLRLTDLTDAQRDDLALALKKLTSRYDNLFQCS 273 (346)
T ss_pred CCeEHHHHHHhhhhcCCeEEEECCCEEEEeccccCCCCeEEEecccCCCChhhCCHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 579999864 2332 247899999999999999999999999999999999999999999999887777766653 2
Q ss_pred -CCceEEEee-cCC---CcCeEEEEEeecC
Q 008885 463 -GKEAVFFEW-LSK---RGTHANLQAVPIP 487 (550)
Q Consensus 463 -~~~~v~~E~-~~~---~~~H~hi~~vPvp 487 (550)
++++++... .+. ...|+|+|++|.-
T Consensus 274 ~pyn~~~h~~p~~~~~~~~~H~HihiiPrl 303 (346)
T PRK11720 274 FPYSMGWHGAPFNGEENDHWQLHAHFYPPL 303 (346)
T ss_pred CCCceeEEecccCCCCCeeEEEEEEEeCCc
Confidence 345454441 111 2579999999963
No 35
>cd00838 MPP_superfamily metallophosphatase superfamily, metallophosphatase domain. Metallophosphatases (MPPs), also known as metallophosphoesterases, phosphodiesterases (PDEs), binuclear metallophosphoesterases, and dimetal-containing phosphoesterases (DMPs), represent a diverse superfamily of enzymes with a conserved domain containing an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. This superfamily includes: the phosphoprotein phosphatases (PPPs), Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive me
Probab=98.86 E-value=2.5e-08 Score=87.53 Aligned_cols=131 Identities=19% Similarity=0.242 Sum_probs=87.7
Q ss_pred EEEcCCCCChHHHHHHHHHHhhhcCCCcEEEEecCCCCCChhhHHHHHHHhcccCCCCccEEEEecCCCChHHHHHHhhc
Q 008885 7 LLCGDVLGRLNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSSELLDEFMNYVEGRSEIPIPTYFIGDYGVGAAKVLLAASK 86 (550)
Q Consensus 7 Lv~GDvhG~~~~l~~kv~~l~~k~GpfD~li~~GDff~~~~~~~~~~~~~l~g~~~~p~ptyfv~GNhe~~~~~l~~l~~ 86 (550)
+++||+|+..............+..+.|+||++||++.............+........|++++.||||
T Consensus 1 ~~~gD~h~~~~~~~~~~~~~~~~~~~~~~vi~~GD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GNHD----------- 69 (131)
T cd00838 1 AVISDIHGNLEALEAVLEAALAAAEKPDFVLVLGDLVGDGPDPEEVLAAALALLLLLGIPVYVVPGNHD----------- 69 (131)
T ss_pred CeeecccCCccchHHHHHHHHhcccCCCEEEECCcccCCCCCchHHHHHHHHHhhcCCCCEEEeCCCce-----------
Confidence 579999999888766542223333457999999999765332221111101222567899999999983
Q ss_pred cccccCcccCCceecCcEEEcCCCCeEEEcCeEEEEEeCccCCCCCCCCCCCHHHHHHHHHhhcCCCCccEEEeCCCCcc
Q 008885 87 NSANQGFKMDGFKVTDNLFWLKGSGNFTLHGLSVAYLSGRQSSEGQQFGTYSQDDVDALRALAEEPGIVDLFLTNEWPSG 166 (550)
Q Consensus 87 ~~~~~~~~~~g~ei~~Nl~~Lg~~gv~~i~GlrIa~lgG~~~~~~~~~~~~te~di~~L~~l~~~~~~vDILLTh~wP~g 166 (550)
|+++|.+|..
T Consensus 70 ----------------------------------------------------------------------i~~~H~~~~~ 79 (131)
T cd00838 70 ----------------------------------------------------------------------ILLTHGPPYD 79 (131)
T ss_pred ----------------------------------------------------------------------EEEeccCCCC
Confidence 8999999987
Q ss_pred ccccccccccccccCCCCCCcHHHHHHHHHhCCCEEEEccCCCccccccccCCCCcceeEEEEcC
Q 008885 167 VTNKAAASDMLVGISDSSNTDSTVSELVAEIKPRYHIAGSKGVFYAREPYSNVDAVHVTRFLGLA 231 (550)
Q Consensus 167 i~~~~~~~~~~~~~~~~~~Gs~~i~~l~~~lkPRYhf~Gh~~~f~er~Py~~~~~~~~TRFI~La 231 (550)
....... ........+..++...+|.++|+||.|.++...+ ....+++|++|
T Consensus 80 ~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~GH~H~~~~~~~-----~~~~~~~v~~g 131 (131)
T cd00838 80 PLDELSP--------DEDPGSEALLELLEKYGVDLVLSGHTHVYERREP-----DGGGTLYINPG 131 (131)
T ss_pred Cchhhcc--------cchhhHHHHHHHHHHhCCCEEEeCCeeccccccC-----CCCceEEecCC
Confidence 6543221 0123578899999999999999999998777542 13346666553
No 36
>PRK09453 phosphodiesterase; Provisional
Probab=98.85 E-value=5.4e-08 Score=93.03 Aligned_cols=68 Identities=7% Similarity=0.087 Sum_probs=46.5
Q ss_pred CEEEEEcCCCCChHHHHHHHHHHhhhcCCCcEEEEecCCCCCCh-------hhHHHHHHHhcccCCCCccEEEEecCCCC
Q 008885 4 PRILLCGDVLGRLNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSS-------ELLDEFMNYVEGRSEIPIPTYFIGDYGVG 76 (550)
Q Consensus 4 ~KILv~GDvhG~~~~l~~kv~~l~~k~GpfD~li~~GDff~~~~-------~~~~~~~~~l~g~~~~p~ptyfv~GNhe~ 76 (550)
|||++++|+||++..+ +++.++.++. +.|.||++||++.... ...+++.+++ .+...++++|.||||.
T Consensus 1 mri~viSD~Hg~~~~~-~~~l~~~~~~-~~d~ii~lGDi~~~~~~~~~~~~~~~~~~~~~l---~~~~~~v~~V~GNhD~ 75 (182)
T PRK09453 1 MKLMFASDTHGSLPAT-EKALELFAQS-GADWLVHLGDVLYHGPRNPLPEGYAPKKVAELL---NAYADKIIAVRGNCDS 75 (182)
T ss_pred CeEEEEEeccCCHHHH-HHHHHHHHhc-CCCEEEEcccccccCcCCCCccccCHHHHHHHH---HhcCCceEEEccCCcc
Confidence 7999999999998764 4444433333 4799999999974211 0123455554 3455689999999984
No 37
>cd07385 MPP_YkuE_C Bacillus subtilis YkuE and related proteins, C-terminal metallophosphatase domain. YkuE is an uncharacterized Bacillus subtilis protein with a C-terminal metallophosphatase domain and an N-terminal twin-arginine (RR) motif. An RR-signal peptide derived from the Bacillus subtilis YkuE protein can direct Tat-dependent secretion of agarase in Streptomyces lividans. This is an indication that YkuE is transported by the Bacillus subtilis Tat (Twin-arginine translocation) pathway machinery. YkuE belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-dia
Probab=98.84 E-value=7.4e-08 Score=94.48 Aligned_cols=163 Identities=17% Similarity=0.173 Sum_probs=92.6
Q ss_pred CCEEEEEcCCCCChH----HHHHHHHHHhhhcCCCcEEEEecCCCCCChhhHHHHHHHhcccCCCCccEEEEecCCCChH
Q 008885 3 PPRILLCGDVLGRLN----QLFKRVQSVNKSAGPFDAVLCVGQFFPDSSELLDEFMNYVEGRSEIPIPTYFIGDYGVGAA 78 (550)
Q Consensus 3 ~~KILv~GDvhG~~~----~l~~kv~~l~~k~GpfD~li~~GDff~~~~~~~~~~~~~l~g~~~~p~ptyfv~GNhe~~~ 78 (550)
.|||++++|+|.... .+.+.++.+.+ . ..|+||++||++.......+.+.+++.. ...+.|+|++.||||...
T Consensus 1 ~~~i~~~sDlH~~~~~~~~~~~~~~~~~~~-~-~~d~vl~~GD~~~~~~~~~~~~~~~l~~-l~~~~~v~~v~GNHD~~~ 77 (223)
T cd07385 1 GLRIAHLSDLHLGPFVSRERLERLVEKINA-L-KPDLVVLTGDLVDGSVDVLELLLELLKK-LKAPLGVYAVLGNHDYYS 77 (223)
T ss_pred CCEEEEEeecCCCccCCHHHHHHHHHHHhc-c-CCCEEEEcCcccCCcchhhHHHHHHHhc-cCCCCCEEEECCCccccc
Confidence 389999999998643 22222333333 2 4699999999986543322345555543 335689999999999642
Q ss_pred HH----HHHhhccccccCcccCCceecCcEEEcCCCCeE-EEcCeEEEEEeCccCCCCCCCCCCCHHHHHHHHHhhcCCC
Q 008885 79 KV----LLAASKNSANQGFKMDGFKVTDNLFWLKGSGNF-TLHGLSVAYLSGRQSSEGQQFGTYSQDDVDALRALAEEPG 153 (550)
Q Consensus 79 ~~----l~~l~~~~~~~~~~~~g~ei~~Nl~~Lg~~gv~-~i~GlrIa~lgG~~~~~~~~~~~~te~di~~L~~l~~~~~ 153 (550)
.. .+.+. ..++.+|....+. +..|.+|.-+|-.... .. .+.....+... ...
T Consensus 78 ~~~~~~~~~l~---------------~~~v~~L~~~~~~~~~~~~~i~i~G~~~~~-~~-----~~~~~~~~~~~--~~~ 134 (223)
T cd07385 78 GDEENWIEALE---------------SAGITVLRNESVEISVGGATIGIAGVDDGL-GR-----RPDLEKALKGL--DED 134 (223)
T ss_pred CchHHHHHHHH---------------HcCCEEeecCcEEeccCCeEEEEEeccCcc-cc-----CCCHHHHHhCC--CCC
Confidence 21 11121 2456677654433 3567676666522110 00 01111122221 235
Q ss_pred CccEEEeCCCCccccccccccccccccCCCCCCcHHHHHHHHHhCCCEEEEccCCCccccccc
Q 008885 154 IVDLFLTNEWPSGVTNKAAASDMLVGISDSSNTDSTVSELVAEIKPRYHIAGSKGVFYAREPY 216 (550)
Q Consensus 154 ~vDILLTh~wP~gi~~~~~~~~~~~~~~~~~~Gs~~i~~l~~~lkPRYhf~Gh~~~f~er~Py 216 (550)
.+.|+|+|. |..+.. +......|.++||.|.+--+.|+
T Consensus 135 ~~~I~l~H~-P~~~~~------------------------~~~~~~dl~l~GHtHggqi~~~~ 172 (223)
T cd07385 135 DPNILLAHQ-PDTAEE------------------------AAAWGVDLQLSGHTHGGQIRLPG 172 (223)
T ss_pred CCEEEEecC-CChhHH------------------------hcccCccEEEeccCCCCEEeccc
Confidence 689999997 322211 13457789999998876555554
No 38
>cd07396 MPP_Nbla03831 Homo sapiens Nbla03831 and related proteins, metallophosphatase domain. Nbla03831 (also known as LOC56985) is an uncharacterized Homo sapiens protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=98.82 E-value=1.9e-07 Score=94.86 Aligned_cols=196 Identities=16% Similarity=0.105 Sum_probs=104.9
Q ss_pred CEEEEEcCCC--CC-----------hHHHHHHHHHHhhhcCCCcEEEEecCCCCCCh----hhHHHHHHHhcccCCCCcc
Q 008885 4 PRILLCGDVL--GR-----------LNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSS----ELLDEFMNYVEGRSEIPIP 66 (550)
Q Consensus 4 ~KILv~GDvh--G~-----------~~~l~~kv~~l~~k~GpfD~li~~GDff~~~~----~~~~~~~~~l~g~~~~p~p 66 (550)
.||++++|+| .+ .+.+-+.++.+++. ++|+||++||+..... ...+.+.+++ ..+++|
T Consensus 1 ~r~~~iSD~H~~~~~~~~~~~~~~~~~~l~~~i~~i~~~--~~d~vv~~GDlv~~~~~~~~~~~~~~~~~l---~~l~~p 75 (267)
T cd07396 1 FRFGIIADIQYADEDDTRPRYYRNSLEKLEEAVEEWNRE--SLDFVVQLGDIIDGDNARAEEALDAVLAIL---DRLKGP 75 (267)
T ss_pred CeEEEEeccccccCCCcccchHHHhHHHHHHHHHHHHcC--CCCEEEECCCeecCCCchHHHHHHHHHHHH---HhcCCC
Confidence 3799999999 21 23334445555544 3899999999975432 2223344444 456799
Q ss_pred EEEEecCCCChHHHHHHhhccccccCcccCCceecCcEEEcCC-CCeEEEcCeEEEEEeCccCCCC--------------
Q 008885 67 TYFIGDYGVGAAKVLLAASKNSANQGFKMDGFKVTDNLFWLKG-SGNFTLHGLSVAYLSGRQSSEG-------------- 131 (550)
Q Consensus 67 tyfv~GNhe~~~~~l~~l~~~~~~~~~~~~g~ei~~Nl~~Lg~-~gv~~i~GlrIa~lgG~~~~~~-------------- 131 (550)
+|+++||||........... .. ....+. .-.++.+|.++.+|-+......
T Consensus 76 ~~~v~GNHD~~~~~~~~~~~--------------~~-~~~~~~~yysf~~~~~~~i~lds~~~~~~~~~~~~~~~~~~~~ 140 (267)
T cd07396 76 VHHVLGNHDLYNPSREYLLL--------------YT-LLGLGAPYYSFSPGGIRFIVLDGYDISALGRPEDTPKAENADD 140 (267)
T ss_pred EEEecCccccccccHhhhhc--------------cc-ccCCCCceEEEecCCcEEEEEeCCccccccCCCCChhhhhHHH
Confidence 99999999853211111100 00 000110 0122346778877766321100
Q ss_pred ----------C----CCCCCCHHHHHHHHHh-hcC--CCCccEEEeCCCCccccccccccccccccCCCCCCcHHHHHHH
Q 008885 132 ----------Q----QFGTYSQDDVDALRAL-AEE--PGIVDLFLTNEWPSGVTNKAAASDMLVGISDSSNTDSTVSELV 194 (550)
Q Consensus 132 ----------~----~~~~~te~di~~L~~l-~~~--~~~vDILLTh~wP~gi~~~~~~~~~~~~~~~~~~Gs~~i~~l~ 194 (550)
. ..+.+.+++..-|++. +.. ....=|+++|.+|..... ... ........+.+++
T Consensus 141 ~~~~~~~~~~~~~~~~~G~l~~~Ql~WL~~~L~~~~~~~~~viV~~Hhp~~~~~~-~~~--------~~~~~~~~~~~ll 211 (267)
T cd07396 141 NSNLGLYLSEPRFVDWNGGIGEEQLQWLRNELQEADANGEKVIIFSHFPLHPEST-SPH--------GLLWNHEEVLSIL 211 (267)
T ss_pred hchhhhhccCccceeccCcCCHHHHHHHHHHHHHHHhcCCeEEEEEeccCCCCCC-Ccc--------ccccCHHHHHHHH
Confidence 0 0124456666655542 211 112238999998754321 110 0122356777888
Q ss_pred HHh-CCCEEEEccCCCccccccccCCCCcceeEEEEcCCCCC
Q 008885 195 AEI-KPRYHIAGSKGVFYAREPYSNVDAVHVTRFLGLAPVGN 235 (550)
Q Consensus 195 ~~l-kPRYhf~Gh~~~f~er~Py~~~~~~~~TRFI~La~~g~ 235 (550)
+.. +.+++|+||.|...... ...+.|+..+....
T Consensus 212 ~~~~~V~~v~~GH~H~~~~~~-------~~gi~~~~~~a~~~ 246 (267)
T cd07396 212 RAYGCVKACISGHDHEGGYAQ-------RHGIHFLTLEGMVE 246 (267)
T ss_pred HhCCCEEEEEcCCcCCCCccc-------cCCeeEEEechhhc
Confidence 774 67899999988765422 22455555555443
No 39
>PHA03008 hypothetical protein; Provisional
Probab=98.80 E-value=8.7e-09 Score=96.54 Aligned_cols=116 Identities=14% Similarity=0.108 Sum_probs=71.4
Q ss_pred cCcEEEcCCCCeEEE----cCeEEEEEeCccCCCCCC--------CCCCCHHHHHHHHHhhcCCCCccEEEeCCCCcccc
Q 008885 101 TDNLFWLKGSGNFTL----HGLSVAYLSGRQSSEGQQ--------FGTYSQDDVDALRALAEEPGIVDLFLTNEWPSGVT 168 (550)
Q Consensus 101 ~~Nl~~Lg~~gv~~i----~GlrIa~lgG~~~~~~~~--------~~~~te~di~~L~~l~~~~~~vDILLTh~wP~gi~ 168 (550)
..|++||..+++ ++ .|++|.|-+-+..-.++. .|.|..++-+.+.-+...+ .+||||||.||.|+.
T Consensus 98 ~gnIIYLeDs~V-tI~f~~rgIKIYGSP~sP~~~F~~sai~k~~~~wAf~~~~d~~i~wwn~IP-~tDILITHgPP~GhL 175 (234)
T PHA03008 98 ELDIIILRDDLI-EFDFFDDIIKIYGQSHIEDKKFKNSHIHKALEGIAHIKKNDDEINYRNHIP-KCDILITASPPFAIL 175 (234)
T ss_pred CCCEEEEeCCcE-EEEecCCceEEECCCCCcchhcccccccccccccccccCccccchhhccCC-CCCEEEeCCCCcccc
Confidence 358999998887 55 689988544432200211 1344322222222233344 499999999999997
Q ss_pred ccccccccccccCCCCCCcHHHHHHHHHhCCCEEEEccCCCccccccccCCCCcceeEEEEcCCCCC
Q 008885 169 NKAAASDMLVGISDSSNTDSTVSELVAEIKPRYHIAGSKGVFYAREPYSNVDAVHVTRFLGLAPVGN 235 (550)
Q Consensus 169 ~~~~~~~~~~~~~~~~~Gs~~i~~l~~~lkPRYhf~Gh~~~f~er~Py~~~~~~~~TRFI~La~~g~ 235 (550)
|. ++|++.+.+-+.++|||||++||.-.|-...-| ....-.|||---..|
T Consensus 176 D~-------------~vGC~~Ll~~I~rVKPKyHVFGh~~~~~~p~~~----~y~di~f~nsni~~n 225 (234)
T PHA03008 176 DD-------------DLACGDLFSKVIKIKPKFHIFNGLTQFSHPNIF----IYKDIIFINSNINHN 225 (234)
T ss_pred cc-------------ccCcHHHHHHHHHhCCcEEEeCCccccCCCcEE----EecceEEEecccccC
Confidence 62 479999999999999999999995333221111 122356777555544
No 40
>KOG3379 consensus Diadenosine polyphosphate hydrolase and related proteins of the histidine triad (HIT) family [Nucleotide transport and metabolism; General function prediction only]
Probab=98.77 E-value=5.3e-08 Score=86.27 Aligned_cols=88 Identities=14% Similarity=0.201 Sum_probs=70.3
Q ss_pred CCcceEEEECCEEEEEecCCCCCCCeEEEEeccccCCCCCCCHHHHHHHHHHHHHHHHHHhhc-CCc--eEEEe---ecC
Q 008885 400 VESHLIVSVGEYYYCALPKGPLVEDHVLVIPVEHVPNTISTSPECEKELGRFQNSLMMYYKNQ-GKE--AVFFE---WLS 473 (550)
Q Consensus 400 ~~~hliis~g~~~yl~l~kgpl~~gH~lIiP~~H~~s~~~l~~~~~~Ei~~~~~~L~~~~~~~-~~~--~v~~E---~~~ 473 (550)
+...-|++...++|++.+..|+.|||+||+|++-++.+.+|+.++.++|..-.+.+.+++++. +.. .|.+. .++
T Consensus 14 i~~~~VFykT~~sfafvNlkPvvpgHVLv~P~R~vpRl~dLt~~E~aDlF~t~~~v~~~lek~~~~ts~ti~iQDG~~AG 93 (150)
T KOG3379|consen 14 IPPDHVFYKTKHSFAFVNLKPVVPGHVLVSPLRVVPRLTDLTAAETADLFTTVQKVQRVLEKHYNATSLTIAIQDGPEAG 93 (150)
T ss_pred CCcceEEEeccceEEEEeccccccceEEEeccccccccccCCcHHHHHHHHHHHHHHHHHHHHhcccceEEEeccccccC
Confidence 444457888999999999999999999999999999999999999888888877777777753 222 23333 244
Q ss_pred CCcCeEEEEEeecC
Q 008885 474 KRGTHANLQAVPIP 487 (550)
Q Consensus 474 ~~~~H~hi~~vPvp 487 (550)
+.++|+|+|++|+-
T Consensus 94 QTVpHvHvHIlPR~ 107 (150)
T KOG3379|consen 94 QTVPHVHVHILPRK 107 (150)
T ss_pred cccceeEEEEcccc
Confidence 55899999999953
No 41
>PLN02643 ADP-glucose phosphorylase
Probab=98.71 E-value=5.2e-08 Score=101.95 Aligned_cols=95 Identities=17% Similarity=0.222 Sum_probs=73.3
Q ss_pred CCCcccCCCCCCCcceEEEECCEEEEEecCCCCCCCeEEEEeccccCCCCCCCHHHHHHHHHHHHHHHHHHhh----cCC
Q 008885 389 KECWFCLSSPSVESHLIVSVGEYYYCALPKGPLVEDHVLVIPVEHVPNTISTSPECEKELGRFQNSLMMYYKN----QGK 464 (550)
Q Consensus 389 ~~C~FC~~~~~~~~hliis~g~~~yl~l~kgpl~~gH~lIiP~~H~~s~~~l~~~~~~Ei~~~~~~L~~~~~~----~~~ 464 (550)
..|.||.+-.. +. ||+.++.+.+++|..|..+||++|||.+|+.++.+++++++.+|....+.+.+.+.. .++
T Consensus 198 g~Clfcdii~~-E~--iV~en~~f~Af~p~ap~~P~evlIiPKrH~~~~~dl~~~e~~~La~ilk~v~~~l~~~~~~~py 274 (336)
T PLN02643 198 GKCSLCEVVKK-DL--LIDESSHFVSIAPFAATFPFEIWIIPRDHSSNFHEIDDDKAVDLGGLLKLMLQKISKQLNDPPY 274 (336)
T ss_pred CCCcHHHHHhC-cc--EEEeCCCEEEEeccccCCCCEEEEEeccccCChhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence 47999986532 22 899999999999999999999999999999999999999999999888766655442 245
Q ss_pred ceEEEe-ec---CCC--cCeEEEEEeec
Q 008885 465 EAVFFE-WL---SKR--GTHANLQAVPI 486 (550)
Q Consensus 465 ~~v~~E-~~---~~~--~~H~hi~~vPv 486 (550)
++++.. -. .+. ..|+|+|++|.
T Consensus 275 N~~~~~~P~~~~~~~~~~~H~hihi~PR 302 (336)
T PLN02643 275 NYMIQTSPLGVEESNLPYTHWFLQIVPQ 302 (336)
T ss_pred eeeeecCCCccccCcccceEEEEEEecC
Confidence 655555 11 111 35777799995
No 42
>cd00608 GalT Galactose-1-phosphate uridyl transferase (GalT): This enzyme plays a key role in galactose metabolism by catalysing the transfer of a uridine 5'-phosphoryl group from UDP-galactose 1-phosphate. The structure of E.coli GalT reveals that the enzyme contains two identical subunits. It also demonstrates that the active site is formed by amino acid residues from both subunits of the dimer.
Probab=98.70 E-value=3.5e-08 Score=103.19 Aligned_cols=100 Identities=17% Similarity=0.195 Sum_probs=76.1
Q ss_pred CCCcccCCC-CCC-CcceEEEECCEEEEEecCCCCCCCeEEEEeccccCCCCCCCHHHHHHHHHHHHHHHHHHhh-c---
Q 008885 389 KECWFCLSS-PSV-ESHLIVSVGEYYYCALPKGPLVEDHVLVIPVEHVPNTISTSPECEKELGRFQNSLMMYYKN-Q--- 462 (550)
Q Consensus 389 ~~C~FC~~~-~~~-~~hliis~g~~~yl~l~kgpl~~gH~lIiP~~H~~s~~~l~~~~~~Ei~~~~~~L~~~~~~-~--- 462 (550)
..|.||.+- ... ....||+.++.+.+++|-.|..|+|++|||.+|+.++.+++++++.+|....+.+.+.+.+ .
T Consensus 184 g~clfcdii~~E~~~~~riV~end~~va~~p~~~~~P~e~lIiPKrH~~~~~dl~~~e~~~La~~l~~v~~~l~~~~~~~ 263 (329)
T cd00608 184 GRCLLCDYLKLELESKERIVVENEHFVAVVPFWARWPFEVHILPKRHVSRFTDLTDEEREDLAEILKRLLARYDNLFNCS 263 (329)
T ss_pred CCccHHHHHHhhhhcCCeEEEeCCCEEEEEecCCCCCcEEEEecCCCcCChhHCCHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 479999764 222 2357899999999999999999999999999999999999999999999888877766543 2
Q ss_pred -CCceEEEe-ecC-----CCcCeEEEEEeecCC
Q 008885 463 -GKEAVFFE-WLS-----KRGTHANLQAVPIPT 488 (550)
Q Consensus 463 -~~~~v~~E-~~~-----~~~~H~hi~~vPvp~ 488 (550)
++++++.. -.+ +...|+|+|++|+-+
T Consensus 264 ~pyn~~~h~~P~~~~~~~~~~~H~Hihi~Pr~~ 296 (329)
T cd00608 264 FPYSMGWHQAPTGGKELENWYYHWHFEIPPRRS 296 (329)
T ss_pred CCeEEEEeccCCCCCcCCcceEEEEEEeCCCcC
Confidence 34444433 111 124699999988743
No 43
>PF11969 DcpS_C: Scavenger mRNA decapping enzyme C-term binding; PDB: 1VLR_B 1XMM_D 1XML_B 1ST0_A 3BLA_B 3BL9_B 3BL7_B 1ST4_B 1XQU_B.
Probab=98.69 E-value=2.2e-08 Score=88.96 Aligned_cols=100 Identities=19% Similarity=0.266 Sum_probs=69.3
Q ss_pred CCcccCCCCCCCcceEEEECCEEEEEecCCCCCCCeEEEEecc-ccCCCCCCCHHHHHHHHHHHHHHHHHHhhcCC----
Q 008885 390 ECWFCLSSPSVESHLIVSVGEYYYCALPKGPLVEDHVLVIPVE-HVPNTISTSPECEKELGRFQNSLMMYYKNQGK---- 464 (550)
Q Consensus 390 ~C~FC~~~~~~~~hliis~g~~~yl~l~kgpl~~gH~lIiP~~-H~~s~~~l~~~~~~Ei~~~~~~L~~~~~~~~~---- 464 (550)
+|.||.+...-+...|++.++.+.++-+..|..+-|+||||.+ |+.|+.+|+.+-..-|.+++....+++++.+.
T Consensus 1 ~cif~~i~~~~~~~~vly~d~~~v~~~D~~P~a~~H~LviPk~~~i~sl~~L~~~~~~lL~~m~~~~~~~~~~~~~~~~~ 80 (116)
T PF11969_consen 1 NCIFCIIIRGEEPERVLYEDDDFVVFKDIYPKAPVHLLVIPKDPHIRSLRDLTPEHLPLLERMREVARELLKEEYPGDLD 80 (116)
T ss_dssp HHHHHHHTTSSSGGGESEEETSEEEEE-TT-SCCEEEEEEESSSS-SSGGG--GGGHHHHHHHHHHHHHHHHHHH-TT-E
T ss_pred CccceEeEcCCCCCcEEEEeCCEEEeeCCCCCcCcEEEEEeecCCCCChHHcCHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 4999988755445568888999999999999999999999999 99999999887777677766666666554321
Q ss_pred --c-eEEEeecCCCcCeEEEEEeecCCCc
Q 008885 465 --E-AVFFEWLSKRGTHANLQAVPIPTSK 490 (550)
Q Consensus 465 --~-~v~~E~~~~~~~H~hi~~vPvp~~~ 490 (550)
. .+.|- ......|+|+|+|..+...
T Consensus 81 ~~~~~~gfH-~~PS~~HLHlHvi~~~~~s 108 (116)
T PF11969_consen 81 SDDIRLGFH-YPPSVYHLHLHVISPDFDS 108 (116)
T ss_dssp GGGEEEEEE-SS-SSSS-EEEEEETTS--
T ss_pred hhhhccccc-CCCCcceEEEEEccCCCcC
Confidence 1 23344 3346789999999977543
No 44
>COG0622 Predicted phosphoesterase [General function prediction only]
Probab=98.68 E-value=6.4e-07 Score=84.93 Aligned_cols=140 Identities=16% Similarity=0.094 Sum_probs=89.7
Q ss_pred CCEEEEEcCCCCChHHHHHHHHHHhhhcCCCcEEEEecCCCCCChhhHHHHHHHhcccCC-CCccEEEEecCCCChHHHH
Q 008885 3 PPRILLCGDVLGRLNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSSELLDEFMNYVEGRSE-IPIPTYFIGDYGVGAAKVL 81 (550)
Q Consensus 3 ~~KILv~GDvhG~~~~l~~kv~~l~~k~GpfD~li~~GDff~~~~~~~~~~~~~l~g~~~-~p~ptyfv~GNhe~~~~~l 81 (550)
.|||||++|+|+.... ..+..++.... ++|+||++||+..+.. +..+ .. +..++|+|-||+|.... .
T Consensus 1 ~m~ilviSDtH~~~~~-~~~~~~~~~~~-~~d~vih~GD~~~~~~-----~~~l----~~~~~~~i~~V~GN~D~~~~-~ 68 (172)
T COG0622 1 MMKILVISDTHGPLRA-IEKALKIFNLE-KVDAVIHAGDSTSPFT-----LDAL----EGGLAAKLIAVRGNCDGEVD-Q 68 (172)
T ss_pred CcEEEEEeccCCChhh-hhHHHHHhhhc-CCCEEEECCCcCCccc-----hHHh----hcccccceEEEEccCCCccc-c
Confidence 4899999999999863 34444444433 5899999999976532 2222 22 45789999999975210 0
Q ss_pred HHhhccccccCcccCCceecCcEEEcCCCCeEEEcCeEEEEEeCccCCCCCCCCCCCHHHHHHHHHhhcCCCCccEEEeC
Q 008885 82 LAASKNSANQGFKMDGFKVTDNLFWLKGSGNFTLHGLSVAYLSGRQSSEGQQFGTYSQDDVDALRALAEEPGIVDLFLTN 161 (550)
Q Consensus 82 ~~l~~~~~~~~~~~~g~ei~~Nl~~Lg~~gv~~i~GlrIa~lgG~~~~~~~~~~~~te~di~~L~~l~~~~~~vDILLTh 161 (550)
.-+....+++++|+||+.+=|.
T Consensus 69 -----------------------~~~p~~~~~~~~g~ki~l~HGh----------------------------------- 90 (172)
T COG0622 69 -----------------------EELPEELVLEVGGVKIFLTHGH----------------------------------- 90 (172)
T ss_pred -----------------------ccCChhHeEEECCEEEEEECCC-----------------------------------
Confidence 1122245677888887755442
Q ss_pred CCCccccccccccccccccCCCCCCcHHHHHHHHHhCCCEEEEccCCCccccccccCCCCcceeEEEEcCCCCCcc
Q 008885 162 EWPSGVTNKAAASDMLVGISDSSNTDSTVSELVAEIKPRYHIAGSKGVFYAREPYSNVDAVHVTRFLGLAPVGNKE 237 (550)
Q Consensus 162 ~wP~gi~~~~~~~~~~~~~~~~~~Gs~~i~~l~~~lkPRYhf~Gh~~~f~er~Py~~~~~~~~TRFI~La~~g~~~ 237 (550)
=..+ ...-..+..++++......++||.|..... ....+.+||+|++..+.
T Consensus 91 --~~~~----------------~~~~~~l~~la~~~~~Dvli~GHTH~p~~~-------~~~~i~~vNPGS~s~pr 141 (172)
T COG0622 91 --LYFV----------------KTDLSLLEYLAKELGADVLIFGHTHKPVAE-------KVGGILLVNPGSVSGPR 141 (172)
T ss_pred --cccc----------------ccCHHHHHHHHHhcCCCEEEECCCCcccEE-------EECCEEEEcCCCcCCCC
Confidence 2211 012235566667777788899998864432 24459999999986543
No 45
>cd07400 MPP_YydB Bacillus subtilis YydB and related proteins, metallophosphatase domain. YydB (BSU40220) is an uncharacterized Bacillus subtilis protein that belongs to the following Bacillus subtilis gene cluster yydB-yydC-yydD-yydG-yydH-yydI-yydJ. YydB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productiv
Probab=98.67 E-value=4.5e-07 Score=82.79 Aligned_cols=108 Identities=15% Similarity=0.103 Sum_probs=72.6
Q ss_pred CCcEEEEecCCCCCChh-hHHHHHHHhcccCCCCccEEEEecCCCChHHHHHHhhccccccCcccCCceecCcEEEcCCC
Q 008885 32 PFDAVLCVGQFFPDSSE-LLDEFMNYVEGRSEIPIPTYFIGDYGVGAAKVLLAASKNSANQGFKMDGFKVTDNLFWLKGS 110 (550)
Q Consensus 32 pfD~li~~GDff~~~~~-~~~~~~~~l~g~~~~p~ptyfv~GNhe~~~~~l~~l~~~~~~~~~~~~g~ei~~Nl~~Lg~~ 110 (550)
++|+||++||++..... ....+.+++.......+|+++++|||| .
T Consensus 35 ~~d~vi~~GDl~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~GNHD------------------------~---------- 80 (144)
T cd07400 35 DPDLVVITGDLTQRGLPEEFEEAREFLDALPAPLEPVLVVPGNHD------------------------V---------- 80 (144)
T ss_pred CCCEEEECCCCCCCCCHHHHHHHHHHHHHccccCCcEEEeCCCCe------------------------E----------
Confidence 58999999999875432 223455565433333359999999985 1
Q ss_pred CeEEEcCeEEEEEeCccCCCCCCCCCCCHHHHHHHHHhhcCCCCccEEEeCCCCccccccccccccccccCCCCCCcHHH
Q 008885 111 GNFTLHGLSVAYLSGRQSSEGQQFGTYSQDDVDALRALAEEPGIVDLFLTNEWPSGVTNKAAASDMLVGISDSSNTDSTV 190 (550)
Q Consensus 111 gv~~i~GlrIa~lgG~~~~~~~~~~~~te~di~~L~~l~~~~~~vDILLTh~wP~gi~~~~~~~~~~~~~~~~~~Gs~~i 190 (550)
|+++|.+|......... ...+...+
T Consensus 81 ----------------------------------------------iv~~Hhp~~~~~~~~~~---------~~~~~~~~ 105 (144)
T cd07400 81 ----------------------------------------------IVVLHHPLVPPPGSGRE---------RLLDAGDA 105 (144)
T ss_pred ----------------------------------------------EEEecCCCCCCCccccc---------cCCCHHHH
Confidence 89999999887432110 12377889
Q ss_pred HHHHHHhCCCEEEEccCCCccccccccCCCCcceeEEEEcC
Q 008885 191 SELVAEIKPRYHIAGSKGVFYAREPYSNVDAVHVTRFLGLA 231 (550)
Q Consensus 191 ~~l~~~lkPRYhf~Gh~~~f~er~Py~~~~~~~~TRFI~La 231 (550)
.+++...+++++++||.|..+-.. +. .....|-+|+.|
T Consensus 106 ~~~l~~~~~~~~l~GH~H~~~~~~-~~--~~~~~~~~~~aG 143 (144)
T cd07400 106 LKLLAEAGVDLVLHGHKHVPYVGN-IS--NAGGGLVVIGAG 143 (144)
T ss_pred HHHHHHcCCCEEEECCCCCcCeee-cc--CCCCCEEEEecC
Confidence 999999999999999988755421 11 123456666655
No 46
>cd07394 MPP_Vps29 Homo sapiens Vps29 and related proteins, metallophosphatase domain. Vps29 (vacuolar sorting protein 29), also known as vacuolar membrane protein Pep11, is a subunit of the retromer complex which is responsible for the retrieval of mannose-6-phosphate receptors (MPRs) from the endosomes for retrograde transport back to the Golgi. Vps29 has a phosphoesterase fold that acts as a protein interaction scaffold for retromer complex assembly as well as a phosphatase with specificity for the cytoplasmic tail of the MPR. The retromer includes the following 5 subunits: Vps35, Vps26, Vps29, and a dimer of the sorting nexins Vps5 (Snx1), and Vps17 (Snx2). Vps29 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily incl
Probab=98.64 E-value=9.3e-07 Score=84.47 Aligned_cols=134 Identities=15% Similarity=0.162 Sum_probs=81.6
Q ss_pred EEEEEcCCC-CChH-HHHHHHHHHhhhcCCCcEEEEecCCCCCChhhHHHHHHHhcccCCCCccEEEEecCCCChHHHHH
Q 008885 5 RILLCGDVL-GRLN-QLFKRVQSVNKSAGPFDAVLCVGQFFPDSSELLDEFMNYVEGRSEIPIPTYFIGDYGVGAAKVLL 82 (550)
Q Consensus 5 KILv~GDvh-G~~~-~l~~kv~~l~~k~GpfD~li~~GDff~~~~~~~~~~~~~l~g~~~~p~ptyfv~GNhe~~~~~l~ 82 (550)
.|+|++|+| |.-. .+-+.+.++.+. ..+|.+|+|||+... +..+++ ..+..|+++|.||||...
T Consensus 1 ~i~viSDtHl~~~~~~~~~~~~~~~~~-~~~d~iih~GDi~~~------~~~~~l---~~~~~~~~~V~GN~D~~~---- 66 (178)
T cd07394 1 LVLVIGDLHIPHRASDLPAKFKKLLVP-GKIQHVLCTGNLCSK------ETYDYL---KTIAPDVHIVRGDFDENL---- 66 (178)
T ss_pred CEEEEEecCCCCCchhhHHHHHHHhcc-CCCCEEEECCCCCCH------HHHHHH---HhhCCceEEEECCCCccc----
Confidence 489999999 5422 122223333332 358999999999762 233333 223347899999997410
Q ss_pred HhhccccccCcccCCceecCcEEEcCCCCeEEEcCeEEEEEeCccCCCCCCCCCCCHHHHHHHHHhhcCCCCccEEEeCC
Q 008885 83 AASKNSANQGFKMDGFKVTDNLFWLKGSGNFTLHGLSVAYLSGRQSSEGQQFGTYSQDDVDALRALAEEPGIVDLFLTNE 162 (550)
Q Consensus 83 ~l~~~~~~~~~~~~g~ei~~Nl~~Lg~~gv~~i~GlrIa~lgG~~~~~~~~~~~~te~di~~L~~l~~~~~~vDILLTh~ 162 (550)
. |....+++++|++ |++||-
T Consensus 67 ~-----------------------lp~~~~~~~~g~~-------------------------------------i~l~HG 86 (178)
T cd07394 67 N-----------------------YPETKVITVGQFK-------------------------------------IGLIHG 86 (178)
T ss_pred c-----------------------CCCcEEEEECCEE-------------------------------------EEEEEC
Confidence 0 1111233455544 456676
Q ss_pred CCccccccccccccccccCCCCCCcHHHHHHHHHhCCCEEEEccCCCccccccccCCCCcceeEEEEcCCCCC
Q 008885 163 WPSGVTNKAAASDMLVGISDSSNTDSTVSELVAEIKPRYHIAGSKGVFYAREPYSNVDAVHVTRFLGLAPVGN 235 (550)
Q Consensus 163 wP~gi~~~~~~~~~~~~~~~~~~Gs~~i~~l~~~lkPRYhf~Gh~~~f~er~Py~~~~~~~~TRFI~La~~g~ 235 (550)
++.+.. .....+..+++...+.+.++||.|..+.+ ....+++||+|+++.
T Consensus 87 ~~~~~~----------------~~~~~~~~~~~~~~~dvii~GHTH~p~~~-------~~~g~~viNPGSv~~ 136 (178)
T cd07394 87 HQVVPW----------------GDPDSLAALQRQLDVDILISGHTHKFEAF-------EHEGKFFINPGSATG 136 (178)
T ss_pred CcCCCC----------------CCHHHHHHHHHhcCCCEEEECCCCcceEE-------EECCEEEEECCCCCC
Confidence 553221 12345667777788899999999864432 233699999999974
No 47
>cd00839 MPP_PAPs purple acid phosphatases of the metallophosphatase superfamily, metallophosphatase domain. Purple acid phosphatases (PAPs) belong to a diverse family of binuclear metallohydrolases that have been identified and characterized in plants, animals, and fungi. PAPs contain a binuclear metal center and their characteristic pink or purple color derives from a charge-transfer transition between a tyrosine residue and a chromophoric ferric ion within the binuclear center. PAPs catalyze the hydrolysis of a wide range of activated phosphoric acid mono- and di-esters and anhydrides. PAPs are distinguished from the other phosphatases by their insensitivity to L-(+) tartrate inhibition and are therefore also known as tartrate resistant acid phosphatases (TRAPs). While only a few copies of PAP-like genes are present in mammalian and fungal genomes, multiple copies are present in plant genomes. PAPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diver
Probab=98.60 E-value=5.5e-07 Score=92.22 Aligned_cols=215 Identities=16% Similarity=0.122 Sum_probs=113.1
Q ss_pred CCEEEEEcCCCC---ChHHHHHHHHHHhhhcCCCcEEEEecCCCCC-Ch---hhHHHHHHHhcccCCCCccEEEEecCCC
Q 008885 3 PPRILLCGDVLG---RLNQLFKRVQSVNKSAGPFDAVLCVGQFFPD-SS---ELLDEFMNYVEGRSEIPIPTYFIGDYGV 75 (550)
Q Consensus 3 ~~KILv~GDvhG---~~~~l~~kv~~l~~k~GpfD~li~~GDff~~-~~---~~~~~~~~~l~g~~~~p~ptyfv~GNhe 75 (550)
+.+++++||.+. ....++ .++.+...++|+||++||+.-. .. ..-+.|.+.+.. ....+|+++++||||
T Consensus 4 ~~~f~v~gD~~~~~~~~~~~~---~~l~~~~~~~d~vl~~GDl~~~~~~~~~~~~~~~~~~~~~-~~~~~P~~~~~GNHD 79 (294)
T cd00839 4 PFKFAVFGDMGQNTNNSTNTL---DHLEKELGNYDAILHVGDLAYADGYNNGSRWDTFMRQIEP-LASYVPYMVTPGNHE 79 (294)
T ss_pred cEEEEEEEECCCCCCCcHHHH---HHHHhccCCccEEEEcCchhhhcCCccchhHHHHHHHHHH-HHhcCCcEEcCcccc
Confidence 468999999995 334444 4443323468999999999532 11 112233333321 123589999999998
Q ss_pred ChHHHHHHhhccccc-cCcccCCceecCcEEEcCCCCeEEEcCeEEEEEeCccCCCCCCCCCCCHHHHHHHHH-hhcCC-
Q 008885 76 GAAKVLLAASKNSAN-QGFKMDGFKVTDNLFWLKGSGNFTLHGLSVAYLSGRQSSEGQQFGTYSQDDVDALRA-LAEEP- 152 (550)
Q Consensus 76 ~~~~~l~~l~~~~~~-~~~~~~g~ei~~Nl~~Lg~~gv~~i~GlrIa~lgG~~~~~~~~~~~~te~di~~L~~-l~~~~- 152 (550)
............... ......+.....+.+| .+++++++|.+|....... ......++++-|++ |+...
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y-----sf~~g~v~fi~Lds~~~~~---~~~~~~~q~~WL~~~L~~~~~ 151 (294)
T cd00839 80 ADYNFSFYKIKAFFPRFRFPHSPSGSTSNLWY-----SFDVGPVHFVSLSTEVDFY---GDGPGSPQYDWLEADLAKVDR 151 (294)
T ss_pred cccCCCCcccccccccccccCCCCCCCCCceE-----EEeeCCEEEEEEecccccc---cCCCCcHHHHHHHHHHHHhcc
Confidence 642111000000000 0000000000111111 2356788999886543211 11233455554543 22211
Q ss_pred --CCccEEEeCCCCccccccccccccccccCCCCCCcHHHHHHHHHhCCCEEEEccCCCccccccccCC---------CC
Q 008885 153 --GIVDLFLTNEWPSGVTNKAAASDMLVGISDSSNTDSTVSELVAEIKPRYHIAGSKGVFYAREPYSNV---------DA 221 (550)
Q Consensus 153 --~~vDILLTh~wP~gi~~~~~~~~~~~~~~~~~~Gs~~i~~l~~~lkPRYhf~Gh~~~f~er~Py~~~---------~~ 221 (550)
.+.-|+++|.|+.......... . ........+.+|+++.+..+.|+||.|.|--..|..+. ..
T Consensus 152 ~~~~~~iv~~H~P~~~~~~~~~~~----~--~~~~~~~~l~~ll~~~~v~~vl~GH~H~y~r~~p~~~~~~~~~~~~~~~ 225 (294)
T cd00839 152 SKTPWIIVMGHRPMYCSNTDHDDC----I--EGEKMRAALEDLFYKYGVDLVLSGHVHAYERTCPVYNGTVVGDCNPYSN 225 (294)
T ss_pred cCCCeEEEEeccCcEecCcccccc----c--hhHHHHHHHHHHHHHhCCCEEEEccceeeEeechhhCCEeccccccccC
Confidence 2456899999987543211100 0 01234567888899999999999999865444665331 12
Q ss_pred cceeEEEEcCCCCC
Q 008885 222 VHVTRFLGLAPVGN 235 (550)
Q Consensus 222 ~~~TRFI~La~~g~ 235 (550)
...|.+|-.|.-|.
T Consensus 226 ~~g~~yiv~G~~G~ 239 (294)
T cd00839 226 PKGPVHIVIGAGGN 239 (294)
T ss_pred CCccEEEEECCCcc
Confidence 34688888887776
No 48
>PRK05340 UDP-2,3-diacylglucosamine hydrolase; Provisional
Probab=98.59 E-value=1.2e-06 Score=87.67 Aligned_cols=204 Identities=15% Similarity=0.107 Sum_probs=102.2
Q ss_pred CEEEEEcCCCCChH--HHHHH-HHHHhhhcCCCcEEEEecCCCCC----C--hhhHHHHHHHhcccCCCCccEEEEecCC
Q 008885 4 PRILLCGDVLGRLN--QLFKR-VQSVNKSAGPFDAVLCVGQFFPD----S--SELLDEFMNYVEGRSEIPIPTYFIGDYG 74 (550)
Q Consensus 4 ~KILv~GDvhG~~~--~l~~k-v~~l~~k~GpfD~li~~GDff~~----~--~~~~~~~~~~l~g~~~~p~ptyfv~GNh 74 (550)
|||++++|+|.... .+.+. ++.+.......|+|+++||+|.. . .....++.+.+....+.++|+|+|.|||
T Consensus 1 M~i~~iSDlHl~~~~~~~~~~~~~~l~~~~~~~d~l~i~GDl~d~~~g~~~~~~~~~~~~~~l~~l~~~g~~v~~v~GNH 80 (241)
T PRK05340 1 MPTLFISDLHLSPERPAITAAFLRFLRGEARQADALYILGDLFEAWIGDDDPSPFAREIAAALKALSDSGVPCYFMHGNR 80 (241)
T ss_pred CcEEEEeecCCCCCChhHHHHHHHHHHhhhccCCEEEEccceeccccccCcCCHHHHHHHHHHHHHHHcCCeEEEEeCCC
Confidence 78999999995421 11111 22222222357999999999742 1 1112334444433345568999999999
Q ss_pred CChHHHHHHhhccccccCcccCCceecCcEEEcCCCCeEEEcCeEEEEEeCccCCCCCCCCCCCHHHHHHHHHhhcCCCC
Q 008885 75 VGAAKVLLAASKNSANQGFKMDGFKVTDNLFWLKGSGNFTLHGLSVAYLSGRQSSEGQQFGTYSQDDVDALRALAEEPGI 154 (550)
Q Consensus 75 e~~~~~l~~l~~~~~~~~~~~~g~ei~~Nl~~Lg~~gv~~i~GlrIa~lgG~~~~~~~~~~~~te~di~~L~~l~~~~~~ 154 (550)
|.. +...+.. ..++..|....+++++|.+|...-|-.... .+.....++++.. .+
T Consensus 81 D~~--~~~~~~~--------------~~g~~~l~~~~~~~~~g~~i~l~HGd~~~~-------~d~~y~~~r~~~r--~~ 135 (241)
T PRK05340 81 DFL--LGKRFAK--------------AAGMTLLPDPSVIDLYGQRVLLLHGDTLCT-------DDKAYQRFRRKVR--NP 135 (241)
T ss_pred chh--hhHHHHH--------------hCCCEEeCCcEEEEECCEEEEEECCccccc-------CCHHHHHHHHHHh--CH
Confidence 842 1111110 123455555556678999999888853211 0111122222211 11
Q ss_pred ccEEEeCCCCccccc----c----ccccccccccCCCCCCcHHHHHHHHHhCCCEEEEccCCCccccccccCCCCcceeE
Q 008885 155 VDLFLTNEWPSGVTN----K----AAASDMLVGISDSSNTDSTVSELVAEIKPRYHIAGSKGVFYAREPYSNVDAVHVTR 226 (550)
Q Consensus 155 vDILLTh~wP~gi~~----~----~~~~~~~~~~~~~~~Gs~~i~~l~~~lkPRYhf~Gh~~~f~er~Py~~~~~~~~TR 226 (550)
.=+.+-+..|..... . +..........-.......+.++++...+++.++||.|.-... .+.+ ....-+
T Consensus 136 ~~~~~~~~~p~~~~~~ia~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~GH~H~~~~~-~~~~--~~~~~~ 212 (241)
T PRK05340 136 WLQWLFLALPLSIRLRIAAKMRAKSKAANQSKSLEIMDVNPEAVAALMEKHGVDTLIHGHTHRPAIH-QLQA--GGQPAT 212 (241)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCcccccCCCHHHHHHHHHHhCCCEEEECcccCccee-eccC--CCcceE
Confidence 111111223322210 0 0000000000012344567889999999999999998753211 1111 111236
Q ss_pred EEEcCCCCC
Q 008885 227 FLGLAPVGN 235 (550)
Q Consensus 227 FI~La~~g~ 235 (550)
.++||.+..
T Consensus 213 ~~~lgdw~~ 221 (241)
T PRK05340 213 RIVLGDWHE 221 (241)
T ss_pred EEEeCCCCC
Confidence 899999964
No 49
>cd00840 MPP_Mre11_N Mre11 nuclease, N-terminal metallophosphatase domain. Mre11 (also known as SbcD in Escherichia coli) is a subunit of the MRX protein complex. This complex includes: Mre11, Rad50, and Xrs2/Nbs1, and plays a vital role in several nuclear processes including DNA double-strand break repair, telomere length maintenance, cell cycle checkpoint control, and meiotic recombination, in eukaryotes. During double-strand break repair, the MRX complex is required to hold the two ends of a broken chromosome together. In vitro studies show that Mre11 has 3'-5' exonuclease activity on dsDNA templates and endonuclease activity on dsDNA and ssDNA templates. In addition to the N-terminal phosphatase domain, the eukaryotic MRE11 members of this family have a C-terminal DNA binding domain (not included in this alignment model). MRE11-like proteins are found in prokaryotes and archaea was well as in eukaryotes. Mre11 belongs to the metallophosphatase (MPP) superfamily. MPPs are functi
Probab=98.58 E-value=1.9e-07 Score=91.13 Aligned_cols=190 Identities=15% Similarity=0.134 Sum_probs=96.2
Q ss_pred EEEEEcCCC-CCh----------HH---HHHHHHHHhhhcCCCcEEEEecCCCCCCh---hhHHHHHHHhcccCCCCccE
Q 008885 5 RILLCGDVL-GRL----------NQ---LFKRVQSVNKSAGPFDAVLCVGQFFPDSS---ELLDEFMNYVEGRSEIPIPT 67 (550)
Q Consensus 5 KILv~GDvh-G~~----------~~---l~~kv~~l~~k~GpfD~li~~GDff~~~~---~~~~~~~~~l~g~~~~p~pt 67 (550)
||+.++|+| |.. .. .++++.....+. ..|+||++||+|.... .....+.+++.......+|+
T Consensus 1 ~i~~~sD~Hlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~d~i~~~GD~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 79 (223)
T cd00840 1 RFLHTADWHLGKPLKGLSRDRRREDQFEAFEEIVELAIEE-KVDFVLIAGDLFDSNNPSPEALELLIEALRRLKEAGIPV 79 (223)
T ss_pred CeEEeccccCCccccCcCcccchHHHHHHHHHHHHHHHhc-CCCEEEECCcccCCCCCCHHHHHHHHHHHHHHHHCCCCE
Confidence 699999999 321 11 223332222233 4799999999987432 22334555553222247899
Q ss_pred EEEecCCCChHHHHHHhhccccccCcccCCceecCcEEEcC---C-CCeE--E--EcCeEEEEEeCccCCCCCCCCCCCH
Q 008885 68 YFIGDYGVGAAKVLLAASKNSANQGFKMDGFKVTDNLFWLK---G-SGNF--T--LHGLSVAYLSGRQSSEGQQFGTYSQ 139 (550)
Q Consensus 68 yfv~GNhe~~~~~l~~l~~~~~~~~~~~~g~ei~~Nl~~Lg---~-~gv~--~--i~GlrIa~lgG~~~~~~~~~~~~te 139 (550)
|++.||||.......... .....++..++ . .... . ..++.|.+++-.... ...
T Consensus 80 ~~~~GNHD~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~g~~~~~~~-------~~~ 140 (223)
T cd00840 80 FIIAGNHDSPSRLGALSP------------LLALSGLHLVGVEEDVLTPLLLPKGGTGVAIYGLPYLRRS-------RLR 140 (223)
T ss_pred EEecCCCCCccccccccc------------hHhhCcEEEEcccCcceeEEEeccCCeEEEEEECCCCCHH-------HHH
Confidence 999999986432111000 00113344331 0 1111 1 235666665432110 001
Q ss_pred HHHHHHHH--hhcCCCCccEEEeCCCCccccccccccccccccCCCCCCcHHHHHHHHHhCCCEEEEccCCCcccccccc
Q 008885 140 DDVDALRA--LAEEPGIVDLFLTNEWPSGVTNKAAASDMLVGISDSSNTDSTVSELVAEIKPRYHIAGSKGVFYAREPYS 217 (550)
Q Consensus 140 ~di~~L~~--l~~~~~~vDILLTh~wP~gi~~~~~~~~~~~~~~~~~~Gs~~i~~l~~~lkPRYhf~Gh~~~f~er~Py~ 217 (550)
+..+.+.. ........-||++|....+...... ...+.....+...+..|+++||.|.....
T Consensus 141 ~~~~~~~~~~~~~~~~~~~Il~~H~~~~~~~~~~~------------~~~~~~~~~~~~~~~d~v~~GH~H~~~~~---- 204 (223)
T cd00840 141 DLLADAELRPRPLDPDDFNILLLHGGVAGAGPSDS------------ERAPFVPEALLPAGFDYVALGHIHRPQII---- 204 (223)
T ss_pred HHHHHHHHHhhccCCCCcEEEEEeeeeecCCCCcc------------cccccCcHhhcCcCCCEEECCCcccCeee----
Confidence 11110111 1123456789999999887642110 11223334455678899999998876542
Q ss_pred CCCCcceeEEEEcCCC
Q 008885 218 NVDAVHVTRFLGLAPV 233 (550)
Q Consensus 218 ~~~~~~~TRFI~La~~ 233 (550)
....++++..|+.
T Consensus 205 ---~~~~~~~~ypGS~ 217 (223)
T cd00840 205 ---LGGGPPIVYPGSP 217 (223)
T ss_pred ---cCCCceEEeCCCc
Confidence 1224566665543
No 50
>cd07395 MPP_CSTP1 Homo sapiens CSTP1 and related proteins, metallophosphatase domain. CSTP1 (complete S-transactivated protein 1) is an uncharacterized Homo sapiens protein with a metallophosphatase domain, that is transactivated by the complete S protein of hepatitis B virus. CSTP1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is th
Probab=98.55 E-value=5e-06 Score=83.93 Aligned_cols=186 Identities=10% Similarity=-0.025 Sum_probs=99.1
Q ss_pred CCEEEEEcCCCCChH----------------HHHHHHHHHhhhcCCCcEEEEecCCCCCChh------hHHHHHHHhccc
Q 008885 3 PPRILLCGDVLGRLN----------------QLFKRVQSVNKSAGPFDAVLCVGQFFPDSSE------LLDEFMNYVEGR 60 (550)
Q Consensus 3 ~~KILv~GDvhG~~~----------------~l~~kv~~l~~k~GpfD~li~~GDff~~~~~------~~~~~~~~l~g~ 60 (550)
+.++++++|+|-... .+-..++.+++.....|+||++||++..... ..+.+.+.+..
T Consensus 4 ~~~f~~~sD~h~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~pd~ii~~GDl~~~~~~~~~~~~~~~~~~~~~~~- 82 (262)
T cd07395 4 PFYFIQGADPQLGLIKKNLEGGGDEWDEEIKLTEQAVQAINKLNPKPKFVVVCGDLVNAMPGDELRERQVSDLKDVLSL- 82 (262)
T ss_pred CEEEEEecCCccchhhccccCchhhhhhHHHHHHHHHHHHHhcCCCCCEEEEeCCcCCCCcchhhHHHHHHHHHHHHhh-
Confidence 568999999998742 1112233333333367999999999754321 12234444432
Q ss_pred CCCCccEEEEecCCCChH----HHHHHhhccccccCcccCCceecCcEEEcCCCCeEEEcCeEEEEEeCccCCCCCCCCC
Q 008885 61 SEIPIPTYFIGDYGVGAA----KVLLAASKNSANQGFKMDGFKVTDNLFWLKGSGNFTLHGLSVAYLSGRQSSEGQQFGT 136 (550)
Q Consensus 61 ~~~p~ptyfv~GNhe~~~----~~l~~l~~~~~~~~~~~~g~ei~~Nl~~Lg~~gv~~i~GlrIa~lgG~~~~~~~~~~~ 136 (550)
...++|+|+++||||... ..+..+.. . ..+. .-.++.+|++|..|.............
T Consensus 83 ~~~~vp~~~i~GNHD~~~~~~~~~~~~f~~--------~----~g~~------~y~~~~~~~~~i~lds~~~~~~~~~~~ 144 (262)
T cd07395 83 LDPDIPLVCVCGNHDVGNTPTEESIKDYRD--------V----FGDD------YFSFWVGGVFFIVLNSQLFFDPSEVPE 144 (262)
T ss_pred ccCCCcEEEeCCCCCCCCCCChhHHHHHHH--------H----hCCc------ceEEEECCEEEEEeccccccCcccccc
Confidence 223789999999998521 11111110 0 0011 012346788888875432111110123
Q ss_pred CCHHHHHHHHHh-hcC---CCCccEEEeCCCCccccccccccccccccCCCCCCcHHHHHHHHHhCCCEEEEccCCCcc
Q 008885 137 YSQDDVDALRAL-AEE---PGIVDLFLTNEWPSGVTNKAAASDMLVGISDSSNTDSTVSELVAEIKPRYHIAGSKGVFY 211 (550)
Q Consensus 137 ~te~di~~L~~l-~~~---~~~vDILLTh~wP~gi~~~~~~~~~~~~~~~~~~Gs~~i~~l~~~lkPRYhf~Gh~~~f~ 211 (550)
...++++-|++. ... ....-|+++|.||............ .........+.+++++......||||.|...
T Consensus 145 ~~~~ql~WL~~~L~~~~~~~~~~~iv~~H~P~~~~~~~~~~~~~----~~~~~~~~~l~~ll~~~~V~~v~~GH~H~~~ 219 (262)
T cd07395 145 LAQAQDVWLEEQLEIAKESDCKHVIVFQHIPWFLEDPDEEDSYF----NIPKSVRKPLLDKFKKAGVKAVFSGHYHRNA 219 (262)
T ss_pred chHHHHHHHHHHHHHHHhccCCcEEEEECcCCccCCCCCCcccC----CcCHHHHHHHHHHHHhcCceEEEECccccCC
Confidence 445556555542 211 2346799999999643211000000 0001123467778888899999999988643
No 51
>cd07378 MPP_ACP5 Homo sapiens acid phosphatase 5 and related proteins, metallophosphatase domain. Acid phosphatase 5 (ACP5) removes the mannose 6-phosphate recognition marker from lysosomal proteins. The exact site of dephosphorylation is not clear. Evidence suggests dephosphorylation may take place in a prelysosomal compartment as well as in the lysosome. ACP5 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site ma
Probab=98.49 E-value=3.5e-06 Score=85.60 Aligned_cols=206 Identities=13% Similarity=0.108 Sum_probs=109.9
Q ss_pred CEEEEEcCCCCC-h---HHHHHHHHHHhhhcCCCcEEEEecCCCC-CC--h----hhHHHHHHHhcccCCCCccEEEEec
Q 008885 4 PRILLCGDVLGR-L---NQLFKRVQSVNKSAGPFDAVLCVGQFFP-DS--S----ELLDEFMNYVEGRSEIPIPTYFIGD 72 (550)
Q Consensus 4 ~KILv~GDvhG~-~---~~l~~kv~~l~~k~GpfD~li~~GDff~-~~--~----~~~~~~~~~l~g~~~~p~ptyfv~G 72 (550)
++++++||.-.. . ..+.+.+.++.++. +.|+||++||++- .. . ...+.+.+.+.. ....+|+|.++|
T Consensus 1 ~~f~~~gD~g~~~~~~~~~~~~~~~~~~~~~-~~dfvv~~GD~~y~~g~~~~~~~~~~~~~~~~~~~-~~~~~P~~~v~G 78 (277)
T cd07378 1 LRFLALGDWGGGGTAGQKAVAKAMAKVAAEL-GPDFILSLGDNFYDDGVGSVDDPRFETTFEDVYSA-PSLQVPWYLVLG 78 (277)
T ss_pred CeEEEEeecCCCCCHHHHHHHHHHHHHHHhc-CCCEEEeCCCccccCCCCCCcchHHHHHHHHHccc-hhhcCCeEEecC
Confidence 478999998774 1 24444455555443 5799999999853 21 1 111234455432 225789999999
Q ss_pred CCCChHHHHHHhhccccccCcccCCceecCcEEEcCCCCeEEEc------CeEEEEEeCccCC-CC--------CCCCCC
Q 008885 73 YGVGAAKVLLAASKNSANQGFKMDGFKVTDNLFWLKGSGNFTLH------GLSVAYLSGRQSS-EG--------QQFGTY 137 (550)
Q Consensus 73 Nhe~~~~~l~~l~~~~~~~~~~~~g~ei~~Nl~~Lg~~gv~~i~------GlrIa~lgG~~~~-~~--------~~~~~~ 137 (550)
|||........+.-... .....+..++.+| .+... +++|.+|--.... .. .....+
T Consensus 79 NHD~~~~~~~~~~~~~~----~~~~~~~~~~~~y-----~~~~~~~~~~~~~~~i~LDt~~~~~~~~~~~~~~~~~~~~~ 149 (277)
T cd07378 79 NHDYSGNVSAQIDYTKR----PNSPRWTMPAYYY-----RVSFPFPSSDTTVEFIMIDTVPLCGNSDDIASPYGPPNGKL 149 (277)
T ss_pred CcccCCCchheeehhcc----CCCCCccCcchhe-----EEEeecCCCCCEEEEEEEeChhHcCccccccccccCcchhh
Confidence 99864221111000000 0001011122111 12233 5788777543211 11 011223
Q ss_pred CHHHHHHHHH-hhcCCCCccEEEeCCCCccccccccccccccccCCCCCCcHHHHHHHHHhCCCEEEEccCCCccccccc
Q 008885 138 SQDDVDALRA-LAEEPGIVDLFLTNEWPSGVTNKAAASDMLVGISDSSNTDSTVSELVAEIKPRYHIAGSKGVFYAREPY 216 (550)
Q Consensus 138 te~di~~L~~-l~~~~~~vDILLTh~wP~gi~~~~~~~~~~~~~~~~~~Gs~~i~~l~~~lkPRYhf~Gh~~~f~er~Py 216 (550)
.+++++-|.+ |.......=|+++|.+|........ .......+.+++++.+..++|+||.|.+....+
T Consensus 150 ~~~Q~~wL~~~L~~~~~~~~iv~~H~P~~~~~~~~~----------~~~~~~~l~~l~~~~~v~~vl~GH~H~~~~~~~- 218 (277)
T cd07378 150 AEEQLAWLEKTLAASTADWKIVVGHHPIYSSGEHGP----------TSCLVDRLLPLLKKYKVDAYLSGHDHNLQHIKD- 218 (277)
T ss_pred HHHHHHHHHHHHHhcCCCeEEEEeCccceeCCCCCC----------cHHHHHHHHHHHHHcCCCEEEeCCcccceeeec-
Confidence 4455555554 3222334569999999875432111 011245677888888999999999887554221
Q ss_pred cCCCCcceeEEEEcCCCCC
Q 008885 217 SNVDAVHVTRFLGLAPVGN 235 (550)
Q Consensus 217 ~~~~~~~~TRFI~La~~g~ 235 (550)
....|++|..|.-+.
T Consensus 219 ----~~~~~~~i~~G~~~~ 233 (277)
T cd07378 219 ----DGSGTSFVVSGAGSK 233 (277)
T ss_pred ----CCCCcEEEEeCCCcc
Confidence 124688888875543
No 52
>PRK11340 phosphodiesterase YaeI; Provisional
Probab=98.46 E-value=4.3e-06 Score=85.16 Aligned_cols=71 Identities=15% Similarity=0.085 Sum_probs=44.8
Q ss_pred CCEEEEEcCCCCC----hHHHHHHHHHHhhhcCCCcEEEEecCCCCC-ChhhHHHHHHHhcccCCCCccEEEEecCCCC
Q 008885 3 PPRILLCGDVLGR----LNQLFKRVQSVNKSAGPFDAVLCVGQFFPD-SSELLDEFMNYVEGRSEIPIPTYFIGDYGVG 76 (550)
Q Consensus 3 ~~KILv~GDvhG~----~~~l~~kv~~l~~k~GpfD~li~~GDff~~-~~~~~~~~~~~l~g~~~~p~ptyfv~GNhe~ 76 (550)
.+||++++|+|.. .+.+-+.++.+++. +.|+|+++||++.. .....+.+.+.+.... .+.|+|+|.||||.
T Consensus 49 ~~rI~~lSDlH~~~~~~~~~l~~~v~~i~~~--~pDlVli~GD~~d~~~~~~~~~~~~~L~~L~-~~~pv~~V~GNHD~ 124 (271)
T PRK11340 49 PFKILFLADLHYSRFVPLSLISDAIALGIEQ--KPDLILLGGDYVLFDMPLNFSAFSDVLSPLA-ECAPTFACFGNHDR 124 (271)
T ss_pred CcEEEEEcccCCCCcCCHHHHHHHHHHHHhc--CCCEEEEccCcCCCCccccHHHHHHHHHHHh-hcCCEEEecCCCCc
Confidence 4899999999975 32333333333332 57999999999752 1112233444443322 24799999999985
No 53
>TIGR01854 lipid_A_lpxH UDP-2,3-diacylglucosamine hydrolase. This model represents LpxH, UDP-2,3-diacylglucosamine hydrolase, and essential enzyme in E. coli that catalyzes the fourth step in lipid A biosynthesis. Note that Pseudomonas aeruginosa has both a member of this family that shares this function and a more distant homolog, designated LpxH2, that does not. Many species that produce lipid A lack an lpxH gene in this family; some of those species have an lpxH2 gene instead, although for which the function is unknown.
Probab=98.35 E-value=1.6e-05 Score=79.00 Aligned_cols=102 Identities=17% Similarity=0.206 Sum_probs=61.3
Q ss_pred EEEEcCCCCCh------HHHHHHHHHHhhhcCCCcEEEEecCCCCC------ChhhHHHHHHHhcccCCCCccEEEEecC
Q 008885 6 ILLCGDVLGRL------NQLFKRVQSVNKSAGPFDAVLCVGQFFPD------SSELLDEFMNYVEGRSEIPIPTYFIGDY 73 (550)
Q Consensus 6 ILv~GDvhG~~------~~l~~kv~~l~~k~GpfD~li~~GDff~~------~~~~~~~~~~~l~g~~~~p~ptyfv~GN 73 (550)
+++++|+|... +.+++.+..+. .+.|+||++||+|.. .....+.+.+.+....+.++|+|+|.||
T Consensus 1 ~~~iSDlHl~~~~~~~~~~~l~~l~~~~---~~~d~lii~GDi~d~~~~~~~~~~~~~~~~~~l~~L~~~~~~v~~v~GN 77 (231)
T TIGR01854 1 TLFISDLHLSPERPDITALFLDFLREEA---RKADALYILGDLFEAWIGDDDPSTLARSVAQAIRQVSDQGVPCYFMHGN 77 (231)
T ss_pred CeEEEecCCCCCChhHHHHHHHHHHhhh---ccCCEEEEcCceeccccCCCCCCHHHHHHHHHHHHHHHCCCeEEEEcCC
Confidence 47899999542 23444443322 257999999999752 1111223333333334557899999999
Q ss_pred CCChHHHHHHhhccccccCcccCCceecCcEEEcCCCCeEEEcCeEEEEEeCc
Q 008885 74 GVGAAKVLLAASKNSANQGFKMDGFKVTDNLFWLKGSGNFTLHGLSVAYLSGR 126 (550)
Q Consensus 74 he~~~~~l~~l~~~~~~~~~~~~g~ei~~Nl~~Lg~~gv~~i~GlrIa~lgG~ 126 (550)
||.. .-..+.. ..++.+|....+++++|.+|..+=|-
T Consensus 78 HD~~--~~~~~~~--------------~~gi~~l~~~~~~~~~g~~ill~HGd 114 (231)
T TIGR01854 78 RDFL--IGKRFAR--------------EAGMTLLPDPSVIDLYGQKVLLMHGD 114 (231)
T ss_pred Cchh--hhHHHHH--------------HCCCEEECCCEEEEECCEEEEEEcCc
Confidence 9842 1111110 13456666666667899999888774
No 54
>cd08163 MPP_Cdc1 Saccharomyces cerevisiae CDC1 and related proteins, metallophosphatase domain. Cdc1 (also known as XlCdc1 in Xenopus laevis) is an endoplasmic reticulum-localized transmembrane lipid phosphatase with a metallophosphatase domain facing the ER lumen. In budding yeast, the gene encoding CDC1 is essential while nonlethal mutations cause defects in Golgi inheritance and actin polarization. Cdc1 mutant cells accumulate an unidentified phospholipid, suggesting that Cdc1 is a lipid phosphatase. Cdc1 mutant cells also have highly elevated intracellular calcium levels suggesting a possible role for Cdc1 in calcium regulation. The 5' flanking region of Cdc1 is a regulatory region with conserved binding site motifs for AP1, AP2, Sp1, NF-1 and CREB. DNA polymerase delta consists of at least four subunits - Pol3, Cdc1, Cdc27, and Cdm1. Cdc1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site
Probab=98.33 E-value=3.4e-05 Score=78.04 Aligned_cols=161 Identities=12% Similarity=0.045 Sum_probs=86.1
Q ss_pred CCcEEEEecCCCCCChh-hHHH----HHHHhcccCCC--CccEEEEecCCCChH------HHHHHhhccccccCcccCCc
Q 008885 32 PFDAVLCVGQFFPDSSE-LLDE----FMNYVEGRSEI--PIPTYFIGDYGVGAA------KVLLAASKNSANQGFKMDGF 98 (550)
Q Consensus 32 pfD~li~~GDff~~~~~-~~~~----~~~~l~g~~~~--p~ptyfv~GNhe~~~------~~l~~l~~~~~~~~~~~~g~ 98 (550)
+.|+||++||++..... ..++ +..+..-.... .+|+|.|+||||... ..+..+..
T Consensus 45 ~PD~vv~lGDL~d~G~~~~~~~~~~~~~rf~~i~~~~~~~~pv~~VpGNHDig~~~~~~~~~~~rf~~------------ 112 (257)
T cd08163 45 KPDSTIFLGDLFDGGRDWADEYWKKEYNRFMRIFDPSPGRKMVESLPGNHDIGFGNGVVLPVRQRFEK------------ 112 (257)
T ss_pred CCCEEEEecccccCCeeCcHHHHHHHHHHHHHHhcCCCccceEEEeCCCcccCCCCCCCHHHHHHHHH------------
Confidence 57999999999864321 1112 22332211222 378999999998521 11111110
Q ss_pred eecCcEEEcCC-CCeEEEcCeEEEEEeCccCCCCCCCCCCCHHHHHHHHHh-hc-CCCCccEEEeCCCCccccccccc--
Q 008885 99 KVTDNLFWLKG-SGNFTLHGLSVAYLSGRQSSEGQQFGTYSQDDVDALRAL-AE-EPGIVDLFLTNEWPSGVTNKAAA-- 173 (550)
Q Consensus 99 ei~~Nl~~Lg~-~gv~~i~GlrIa~lgG~~~~~~~~~~~~te~di~~L~~l-~~-~~~~vDILLTh~wP~gi~~~~~~-- 173 (550)
++|. ..++.++|.+|.+|-+....... ......+..+-|.+. .. .....=|||||.|..-..+....
T Consensus 113 -------~Fg~~~~~~~~~~~~fV~Lds~~l~~~~-~~~~~~~~~~~l~~~l~~~~~~~p~ILl~H~Plyr~~~~~cg~~ 184 (257)
T cd08163 113 -------YFGPTSRVIDVGNHTFVILDTISLSNKD-DPDVYQPPREFLHSFSAMKVKSKPRILLTHVPLYRPPNTSCGPL 184 (257)
T ss_pred -------HhCCCceEEEECCEEEEEEccccccCCc-ccccchhHHHHHHhhhhccCCCCcEEEEeccccccCCCCCCCCc
Confidence 1121 13456778888888775322111 122323333333332 21 12345599999997655431111
Q ss_pred --cc--ccc--ccCCC-CCCcHHHHHHHHHhCCCEEEEccCCCccc
Q 008885 174 --SD--MLV--GISDS-SNTDSTVSELVAEIKPRYHIAGSKGVFYA 212 (550)
Q Consensus 174 --~~--~~~--~~~~~-~~Gs~~i~~l~~~lkPRYhf~Gh~~~f~e 212 (550)
.. .+. +..-. .+..+.-.+|++.+||+..|+||.|.|.+
T Consensus 185 re~~~~~~~~~g~~yq~~l~~~~s~~il~~~~P~~vfsGhdH~~C~ 230 (257)
T cd08163 185 RESKTPLPYGYGYQYQNLLEPSLSEVILKAVQPVIAFSGDDHDYCE 230 (257)
T ss_pred cccCCCCCCCCCccceeecCHHHHHHHHHhhCCcEEEecCCCccce
Confidence 00 111 11111 23445667899999999999999888877
No 55
>TIGR00583 mre11 DNA repair protein (mre11). All proteins in this family for which functions are known are subunits of a nuclease complex made up of multiple proteins including MRE11 and RAD50 homologs. The functions of this nuclease complex include recombinational repair and non-homolgous end joining. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). The proteins in this family are distantly related to proteins in the SbcCD complex of bacteria.
Probab=98.30 E-value=3.5e-06 Score=90.30 Aligned_cols=75 Identities=23% Similarity=0.329 Sum_probs=46.8
Q ss_pred CCEEEEEcCCCCCh-----------HHHHHHHHHHhhhcCCCcEEEEecCCCCCChh-------hHHHHHHHhcc-----
Q 008885 3 PPRILLCGDVLGRL-----------NQLFKRVQSVNKSAGPFDAVLCVGQFFPDSSE-------LLDEFMNYVEG----- 59 (550)
Q Consensus 3 ~~KILv~GDvhG~~-----------~~l~~kv~~l~~k~GpfD~li~~GDff~~~~~-------~~~~~~~~l~g----- 59 (550)
.||||+++|+|-.. ...|+++-.+..+. ..|+||++||+|..... ..+.+..|.-|
T Consensus 3 ~mKIlh~SD~HlG~~~~~~~r~~D~~~~f~eil~~a~~~-~vD~VLiaGDLFd~~~Ps~~~~~~~~~~lr~~~~g~~p~~ 81 (405)
T TIGR00583 3 TIRILVSTDNHVGYGENDPVRGDDSWNTFEEVLQIAKEQ-DVDMILLGGDLFHENKPSRKSLYQVLRSLRLYCLGDKPCE 81 (405)
T ss_pred ceEEEEEcCCCCCCccCCchhhhhHHHHHHHHHHHHHHc-CCCEEEECCccCCCCCCCHHHHHHHHHHHHHhhccCCccc
Confidence 58999999999421 12334433333333 58999999999975321 12223332111
Q ss_pred ------------------------cCCCCccEEEEecCCCChH
Q 008885 60 ------------------------RSEIPIPTYFIGDYGVGAA 78 (550)
Q Consensus 60 ------------------------~~~~p~ptyfv~GNhe~~~ 78 (550)
...+.+|+|.|.||||++.
T Consensus 82 ~~~Lsd~~~~~~~~~~~~~ny~d~~~~~~iPVf~I~GNHD~p~ 124 (405)
T TIGR00583 82 LEFLSDASVVFNQSAFGNVNYEDPNINVAIPVFSIHGNHDDPS 124 (405)
T ss_pred hhhccchhhhcccccccccccccccccCCCCEEEEcCCCCCcc
Confidence 1136799999999999875
No 56
>PHA02239 putative protein phosphatase
Probab=98.27 E-value=2.1e-06 Score=85.56 Aligned_cols=78 Identities=10% Similarity=0.115 Sum_probs=53.9
Q ss_pred CEEEEEcCCCCChHHHHHHHHHHhhhcCCCcEEEEecCCCCCChhhHHHHHHHhcccCCCCccEEEEecCCCChHHHHHH
Q 008885 4 PRILLCGDVLGRLNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSSELLDEFMNYVEGRSEIPIPTYFIGDYGVGAAKVLLA 83 (550)
Q Consensus 4 ~KILv~GDvhG~~~~l~~kv~~l~~k~GpfD~li~~GDff~~~~~~~~~~~~~l~g~~~~p~ptyfv~GNhe~~~~~l~~ 83 (550)
|||+++||+||+++.+.+.++.+....++.|.||++||+..-.....+.+..++. ....+.+++++.||||. .+++-
T Consensus 1 m~~~~IsDIHG~~~~l~~ll~~i~~~~~~~d~li~lGD~iDrG~~s~~v~~~l~~-~~~~~~~~~~l~GNHE~--~~l~~ 77 (235)
T PHA02239 1 MAIYVVPDIHGEYQKLLTIMDKINNERKPEETIVFLGDYVDRGKRSKDVVNYIFD-LMSNDDNVVTLLGNHDD--EFYNI 77 (235)
T ss_pred CeEEEEECCCCCHHHHHHHHHHHhhcCCCCCEEEEecCcCCCCCChHHHHHHHHH-HhhcCCCeEEEECCcHH--HHHHH
Confidence 6899999999999998877877765444579999999996543322223333322 12334679999999973 45554
Q ss_pred h
Q 008885 84 A 84 (550)
Q Consensus 84 l 84 (550)
+
T Consensus 78 ~ 78 (235)
T PHA02239 78 M 78 (235)
T ss_pred H
Confidence 4
No 57
>cd07383 MPP_Dcr2 Saccharomyces cerevisiae DCR2 phosphatase and related proteins, metallophosphatase domain. DCR2 phosphatase (Dosage-dependent Cell Cycle Regulator 2) functions together with DCR1 (Gid8) in a common pathway to accelerate initiation of DNA replication in Saccharomyces cerevisiae. Genetic analysis suggests that DCR1 functions upstream of DCR2. DCR2 interacts with and dephosphorylates Sic1, an inhibitor of mitotic cyclin/cyclin-dependent kinase complexes, which may serve to trigger the initiation of cell division. DCR2 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAP
Probab=98.22 E-value=2.1e-05 Score=76.12 Aligned_cols=72 Identities=14% Similarity=0.018 Sum_probs=46.2
Q ss_pred CCEEEEEcCCCCChH-----------HHHHHHHHHhhhcCCCcEEEEecCCCCCChh---hHHHHHHHhcccCCCCccEE
Q 008885 3 PPRILLCGDVLGRLN-----------QLFKRVQSVNKSAGPFDAVLCVGQFFPDSSE---LLDEFMNYVEGRSEIPIPTY 68 (550)
Q Consensus 3 ~~KILv~GDvhG~~~-----------~l~~kv~~l~~k~GpfD~li~~GDff~~~~~---~~~~~~~~l~g~~~~p~pty 68 (550)
.+||++++|+|-... ...+.+.++.++. ++|+||++||++..... ....+..++.-.....+|++
T Consensus 2 ~~ki~~isDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~d~vv~~GDl~~~~~~~~~~~~~~~~~~~~l~~~~~p~~ 80 (199)
T cd07383 2 KFKILQFADLHFGEGEGTCEGCEADLKTVAFIERVLDAE-KPDLVVLTGDLITGENTNDNSTSALDKAVSPMIDRKIPWA 80 (199)
T ss_pred ceEEEEEeeecccCCCCCCCcchhhHHHHHHHHHHHhhc-CCCEEEECCccccCCCCchHHHHHHHHHHHHHHHcCCCEE
Confidence 579999999996322 2333444433333 57999999999653221 23344444432244579999
Q ss_pred EEecCCC
Q 008885 69 FIGDYGV 75 (550)
Q Consensus 69 fv~GNhe 75 (550)
+++||||
T Consensus 81 ~~~GNHD 87 (199)
T cd07383 81 ATFGNHD 87 (199)
T ss_pred EECccCC
Confidence 9999996
No 58
>cd07401 MPP_TMEM62_N Homo sapiens TMEM62, N-terminal metallophosphatase domain. TMEM62 (transmembrane protein 62) is an uncharacterized Homo sapiens transmembrane protein with an N-terminal metallophosphatase domain. TMEM62 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=98.21 E-value=6.9e-05 Score=75.73 Aligned_cols=191 Identities=12% Similarity=0.081 Sum_probs=100.4
Q ss_pred EEEEcCCCCChH---HH--H-H-HHHHHhhhcCCCcEEEEecCCCCCCh-------hhHH---HHHHHhcccCCC-CccE
Q 008885 6 ILLCGDVLGRLN---QL--F-K-RVQSVNKSAGPFDAVLCVGQFFPDSS-------ELLD---EFMNYVEGRSEI-PIPT 67 (550)
Q Consensus 6 ILv~GDvhG~~~---~l--~-~-kv~~l~~k~GpfD~li~~GDff~~~~-------~~~~---~~~~~l~g~~~~-p~pt 67 (550)
|+.++|+|-... .. . + .++.+++- +.|+||++||+..... .... .+.+.+...... +.|+
T Consensus 2 ~~~iSDlH~g~~~~~~~~~~~~~~~~~i~~~--~pd~i~~~GD~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 79 (256)
T cd07401 2 FVHISDIHVSSFHPPNRAQDETFCSNFIDVI--KPALVLATGDLTDNKTGNKLPSYQYQEEWQKYYNILKESSVINKEKW 79 (256)
T ss_pred EEEecccccCCcCchhhhhHHHHHHHHHHhh--CCCEEEEccccccccccCCCcccccHHHHHHHHHHHHHhCCCCcceE
Confidence 678999996321 11 1 1 12333322 4799999999864211 1122 333333222222 5899
Q ss_pred EEEecCCCChHHHHHHhhccccccCcccCCceecCcEEEcCCCC--eEE--EcCeEEEEEeCccCCCCC----CCCCCCH
Q 008885 68 YFIGDYGVGAAKVLLAASKNSANQGFKMDGFKVTDNLFWLKGSG--NFT--LHGLSVAYLSGRQSSEGQ----QFGTYSQ 139 (550)
Q Consensus 68 yfv~GNhe~~~~~l~~l~~~~~~~~~~~~g~ei~~Nl~~Lg~~g--v~~--i~GlrIa~lgG~~~~~~~----~~~~~te 139 (550)
|.|+||||.. .... ... ... .+.. .... .+.... .++ .++++|.+|......+.. ..+.+++
T Consensus 80 ~~v~GNHD~~-~~~~-~~~-~~~-~~~~---y~~~---~~~~~~~~~~~~~~~~~~~I~Ldt~~~~~~~~~~~~~g~l~~ 149 (256)
T cd07401 80 FDIRGNHDLF-NIPS-LDS-ENN-YYRK---YSAT---GRDGSFSFSHTTRFGNYSFIGVDPTLFPGPKRPFNFFGSLDK 149 (256)
T ss_pred EEeCCCCCcC-CCCC-ccc-hhh-HHHH---hhee---cCCCccceEEEecCCCEEEEEEcCccCCCCCCCCceeccCCH
Confidence 9999999852 1100 000 000 0000 0000 011111 111 368899988876432111 1245678
Q ss_pred HHHHHHHH-hhcC-CCCccEEEeCCCCccccccccccccccccCCCCCCcHHHHHHHHHhCCCEEEEccCCCcccccccc
Q 008885 140 DDVDALRA-LAEE-PGIVDLFLTNEWPSGVTNKAAASDMLVGISDSSNTDSTVSELVAEIKPRYHIAGSKGVFYAREPYS 217 (550)
Q Consensus 140 ~di~~L~~-l~~~-~~~vDILLTh~wP~gi~~~~~~~~~~~~~~~~~~Gs~~i~~l~~~lkPRYhf~Gh~~~f~er~Py~ 217 (550)
++++.|++ +... ..+.-|+++|.|+....... ...+.. +.+++++.++.+.||||.|...--.|.-
T Consensus 150 ~ql~wL~~~L~~~~~~~~~IV~~HhP~~~~~~~~-----------~~~~~~-~~~ll~~~~v~~vl~GH~H~~~~~~p~h 217 (256)
T cd07401 150 KLLDRLEKELEKSTNSNYTIWFGHYPTSTIISPS-----------AKSSSK-FKDLLKKYNVTAYLCGHLHPLGGLEPVH 217 (256)
T ss_pred HHHHHHHHHHHhcccCCeEEEEEcccchhccCCC-----------cchhHH-HHHHHHhcCCcEEEeCCccCCCcceeee
Confidence 88887765 3222 23567999999985432110 112223 8888999999999999988633337776
Q ss_pred CCC
Q 008885 218 NVD 220 (550)
Q Consensus 218 ~~~ 220 (550)
+.+
T Consensus 218 ~~~ 220 (256)
T cd07401 218 YAG 220 (256)
T ss_pred ecC
Confidence 543
No 59
>PLN02533 probable purple acid phosphatase
Probab=98.20 E-value=7.1e-05 Score=81.14 Aligned_cols=208 Identities=14% Similarity=0.126 Sum_probs=109.9
Q ss_pred CCEEEEEcCCCCChHHHHHHHHHHhhhcCCCcEEEEecCCCCCChh--hHHHHHHHhcccCCCCccEEEEecCCCChHH-
Q 008885 3 PPRILLCGDVLGRLNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSSE--LLDEFMNYVEGRSEIPIPTYFIGDYGVGAAK- 79 (550)
Q Consensus 3 ~~KILv~GDvhG~~~~l~~kv~~l~~k~GpfD~li~~GDff~~~~~--~~~~~~~~l~g~~~~p~ptyfv~GNhe~~~~- 79 (550)
+.|++++||.+-. ......++.+++. .+|+||++||+.-.+.. .-+.|.+++.. ....+|.+.++||||....
T Consensus 139 ~~~f~v~GDlG~~-~~~~~tl~~i~~~--~pD~vl~~GDl~y~~~~~~~wd~f~~~i~~-l~s~~P~m~~~GNHE~~~~~ 214 (427)
T PLN02533 139 PIKFAVSGDLGTS-EWTKSTLEHVSKW--DYDVFILPGDLSYANFYQPLWDTFGRLVQP-LASQRPWMVTHGNHELEKIP 214 (427)
T ss_pred CeEEEEEEeCCCC-cccHHHHHHHHhc--CCCEEEEcCccccccchHHHHHHHHHHhhh-HhhcCceEEeCccccccccc
Confidence 4689999998532 1111234444332 58999999999643221 11234444322 2235899999999995310
Q ss_pred -----HHHHhhccccccCcccCCceecCcEEEcCCCCeEEEcCeEEEEEeCccCCCCCCCCCCCHHHHHHHHH-hhc---
Q 008885 80 -----VLLAASKNSANQGFKMDGFKVTDNLFWLKGSGNFTLHGLSVAYLSGRQSSEGQQFGTYSQDDVDALRA-LAE--- 150 (550)
Q Consensus 80 -----~l~~l~~~~~~~~~~~~g~ei~~Nl~~Lg~~gv~~i~GlrIa~lgG~~~~~~~~~~~~te~di~~L~~-l~~--- 150 (550)
.+..+.. .+. .+........|.+| .+..+++.|..|+.-... ....++.+-|++ |++
T Consensus 215 ~~~~~~f~~y~~-rf~--mP~~~~g~~~~~yY-----Sfd~g~vhfI~Lds~~~~------~~~~~Q~~WLe~dL~~~~r 280 (427)
T PLN02533 215 ILHPEKFTAYNA-RWR--MPFEESGSTSNLYY-----SFNVYGVHIIMLGSYTDF------EPGSEQYQWLENNLKKIDR 280 (427)
T ss_pred cccCcCccchhh-ccc--CCccccCCCCCceE-----EEEECCEEEEEEeCCccc------cCchHHHHHHHHHHHhhcc
Confidence 0000000 000 00000000123332 245778899988763211 112333333433 221
Q ss_pred CCCCccEEEeCCCCccccccccccccccccCCCCCC-cHHHHHHHHHhCCCEEEEccCCCcccc-ccccCCC-CcceeEE
Q 008885 151 EPGIVDLFLTNEWPSGVTNKAAASDMLVGISDSSNT-DSTVSELVAEIKPRYHIAGSKGVFYAR-EPYSNVD-AVHVTRF 227 (550)
Q Consensus 151 ~~~~vDILLTh~wP~gi~~~~~~~~~~~~~~~~~~G-s~~i~~l~~~lkPRYhf~Gh~~~f~er-~Py~~~~-~~~~TRF 227 (550)
...+.-|++.|.||......... .. ...+ -..+..|+.+.++.+.|+||.|. ||| .|..+.. ....|..
T Consensus 281 ~~~pwiIv~~H~P~y~s~~~~~~----~~---~~~~~r~~le~Ll~~~~VdlvlsGH~H~-YeR~~p~~~~~~~~~gpvy 352 (427)
T PLN02533 281 KTTPWVVAVVHAPWYNSNEAHQG----EK---ESVGMKESMETLLYKARVDLVFAGHVHA-YERFDRVYQGKTDKCGPVY 352 (427)
T ss_pred cCCCEEEEEeCCCeeecccccCC----cc---hhHHHHHHHHHHHHHhCCcEEEecceec-ccccccccCCccCCCCCEE
Confidence 12356789999999865321000 00 0111 24688899999999999999984 666 3433321 2346888
Q ss_pred EEcCCCCCc
Q 008885 228 LGLAPVGNK 236 (550)
Q Consensus 228 I~La~~g~~ 236 (550)
|-.|.-|+.
T Consensus 353 iv~G~gG~~ 361 (427)
T PLN02533 353 ITIGDGGNR 361 (427)
T ss_pred EEeCCCccc
Confidence 888887773
No 60
>PRK00166 apaH diadenosine tetraphosphatase; Reviewed
Probab=98.19 E-value=3.3e-06 Score=86.07 Aligned_cols=68 Identities=15% Similarity=0.198 Sum_probs=49.3
Q ss_pred CEEEEEcCCCCChHHHHHHHHHHhhhcCCCcEEEEecCCCCCChhhHHHHHHHhcccCCCCccEEEEecCCCC
Q 008885 4 PRILLCGDVLGRLNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSSELLDEFMNYVEGRSEIPIPTYFIGDYGVG 76 (550)
Q Consensus 4 ~KILv~GDvhG~~~~l~~kv~~l~~k~GpfD~li~~GDff~~~~~~~~~~~~~l~g~~~~p~ptyfv~GNhe~ 76 (550)
|+|+|+||+||+++.+.+.++++.-. ...|.++++||+..-++... ++.+++ .+++.++++|.||||.
T Consensus 1 M~~~vIGDIHG~~~~l~~ll~~~~~~-~~~D~li~lGDlVdrGp~s~-~vl~~l---~~l~~~~~~VlGNHD~ 68 (275)
T PRK00166 1 MATYAIGDIQGCYDELQRLLEKIDFD-PAKDTLWLVGDLVNRGPDSL-EVLRFV---KSLGDSAVTVLGNHDL 68 (275)
T ss_pred CcEEEEEccCCCHHHHHHHHHhcCCC-CCCCEEEEeCCccCCCcCHH-HHHHHH---HhcCCCeEEEecChhH
Confidence 57999999999999987777765321 24699999999976443322 444554 3345578999999984
No 61
>PHA02546 47 endonuclease subunit; Provisional
Probab=98.18 E-value=3.2e-05 Score=81.46 Aligned_cols=139 Identities=13% Similarity=0.122 Sum_probs=74.6
Q ss_pred CEEEEEcCCC-CC----------hHHHHHHHHHHhhhcCCCcEEEEecCCCCCC---h-hhHHHHHH-HhcccCCCCccE
Q 008885 4 PRILLCGDVL-GR----------LNQLFKRVQSVNKSAGPFDAVLCVGQFFPDS---S-ELLDEFMN-YVEGRSEIPIPT 67 (550)
Q Consensus 4 ~KILv~GDvh-G~----------~~~l~~kv~~l~~k~GpfD~li~~GDff~~~---~-~~~~~~~~-~l~g~~~~p~pt 67 (550)
||||.++|+| |. +..+++++-.+..+. .+|+||++||+|... . .....+.+ ++.-..+.++|+
T Consensus 1 MKilhiSD~HLG~~~~~~~~~~~~~~~l~~ii~~a~~~-~vD~VliaGDlfD~~~~~~~~~~~~~~~~l~~~L~~~gi~v 79 (340)
T PHA02546 1 MKILLIGDQHLGVRKDDPWFQNYQLKFIKQAIEYSKAH-GITTWIQLGDTFDVRKAITQNTMNFVREKIFDLLKEAGITL 79 (340)
T ss_pred CeEEEEeeecCCCcCCChhhHHHHHHHHHHHHHHHHHc-CCCEEEECCcccCCCCCCCHHHHHHHHHHHHHHHHHCCCeE
Confidence 7999999999 31 234445544333344 579999999998652 1 11122222 222224568999
Q ss_pred EEEecCCCChHHHHHHhhccccccCcccCCceecCcEEEcCCCCeEEEcCeEEEEEeCccCCCCCCCCCCCHHHHHHHHH
Q 008885 68 YFIGDYGVGAAKVLLAASKNSANQGFKMDGFKVTDNLFWLKGSGNFTLHGLSVAYLSGRQSSEGQQFGTYSQDDVDALRA 147 (550)
Q Consensus 68 yfv~GNhe~~~~~l~~l~~~~~~~~~~~~g~ei~~Nl~~Lg~~gv~~i~GlrIa~lgG~~~~~~~~~~~~te~di~~L~~ 147 (550)
|+|+||||.... ....... ...--...+|++.......++++|++|..+.- ...++...+..
T Consensus 80 ~~I~GNHD~~~~--~~~~~~~-----~~~ll~~~~~v~v~~~~~~v~i~g~~i~~lP~-----------~~~~~~~~~~~ 141 (340)
T PHA02546 80 HVLVGNHDMYYK--NTIRPNA-----PTELLGQYDNITVIDEPTTVDFDGCSIDLIPW-----------ICKENTEEILE 141 (340)
T ss_pred EEEccCCCcccc--cccccCc-----hHHHHhhCCCEEEeCCceEEEECCEEEEECCC-----------CCHHHHHHHHH
Confidence 999999984210 0000000 00000113677766654555677777664422 22333333332
Q ss_pred hhcCCCCccEEEeCC
Q 008885 148 LAEEPGIVDLFLTNE 162 (550)
Q Consensus 148 l~~~~~~vDILLTh~ 162 (550)
... .....|||.|.
T Consensus 142 ~l~-~~~~~ill~H~ 155 (340)
T PHA02546 142 FIK-NSKSEYCVGHW 155 (340)
T ss_pred Hhc-cCCCcEEEEee
Confidence 221 24568999995
No 62
>PRK04036 DNA polymerase II small subunit; Validated
Probab=98.18 E-value=2.4e-05 Score=86.51 Aligned_cols=117 Identities=16% Similarity=0.248 Sum_probs=66.8
Q ss_pred CCEEEEEcCCC-CCh---HHHHHH-HHHHhhh-------cCCCcEEEEecCCCCC-----Ch----------hhHHHHHH
Q 008885 3 PPRILLCGDVL-GRL---NQLFKR-VQSVNKS-------AGPFDAVLCVGQFFPD-----SS----------ELLDEFMN 55 (550)
Q Consensus 3 ~~KILv~GDvh-G~~---~~l~~k-v~~l~~k-------~GpfD~li~~GDff~~-----~~----------~~~~~~~~ 55 (550)
.++|++++|+| |.- ...+.+ +.-++.. ....|.||++||++.. .. ...+.+.+
T Consensus 243 ~~~i~~ISDlHlgs~~~~~~~l~~li~~L~g~~~~~~~~~~~~d~lVIaGDivd~~~~~p~~~~~~~~~~~~~~~~~l~~ 322 (504)
T PRK04036 243 KVYAVFISDVHVGSKEFLEDAFEKFIDWLNGEVGNEEEIASRVKYLIIAGDLVDGIGIYPGQEEELEIVDIYEQYEAAAE 322 (504)
T ss_pred ccEEEEEcccCCCCcchhHHHHHHHHHHHhCCCccchhhhhcCCEEEEeCcccccccCCccchhhccchhhHHHHHHHHH
Confidence 47899999999 542 111222 2222311 2247999999999752 10 01124555
Q ss_pred HhcccCCCCccEEEEecCCCChHHHHHHhhccccccCcccC-Cceec-CcEEEcCCCCeEEEcCeEEEEEeCcc
Q 008885 56 YVEGRSEIPIPTYFIGDYGVGAAKVLLAASKNSANQGFKMD-GFKVT-DNLFWLKGSGNFTLHGLSVAYLSGRQ 127 (550)
Q Consensus 56 ~l~g~~~~p~ptyfv~GNhe~~~~~l~~l~~~~~~~~~~~~-g~ei~-~Nl~~Lg~~gv~~i~GlrIa~lgG~~ 127 (550)
++.. ....+|+++++||||.... .++.. .+... ...+. .|+.+|..-..++++|.+|.+..|..
T Consensus 323 ~L~~-L~~~i~V~~ipGNHD~~~~---~lPQ~----~l~~~l~~~l~~~~v~~lsNP~~i~l~G~~iLl~HG~~ 388 (504)
T PRK04036 323 YLKQ-IPEDIKIIISPGNHDAVRQ---AEPQP----AFPEEIRSLFPEHNVTFVSNPALVNLHGVDVLIYHGRS 388 (504)
T ss_pred HHHh-hhcCCeEEEecCCCcchhh---ccCCC----CccHHHHHhcCcCCeEEecCCeEEEECCEEEEEECCCC
Confidence 6543 2235899999999984321 11100 00000 00012 47888887566678999999999974
No 63
>cd07399 MPP_YvnB Bacillus subtilis YvnB and related proteins, metallophosphatase domain. YvnB (BSU35040) is an uncharacterized Bacillus subtilis protein with a metallophosphatase domain. This family includes bacterial and eukaryotic proteins similar to YvnB. YvnB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for
Probab=98.15 E-value=2.4e-05 Score=76.89 Aligned_cols=151 Identities=11% Similarity=0.036 Sum_probs=82.1
Q ss_pred EEEEEcCCCCChH-------HHHHHHHHHhhhcCCCcEEEEecCCCCCCh--hhHHHHHHHhcccCCCCccEEEEecCCC
Q 008885 5 RILLCGDVLGRLN-------QLFKRVQSVNKSAGPFDAVLCVGQFFPDSS--ELLDEFMNYVEGRSEIPIPTYFIGDYGV 75 (550)
Q Consensus 5 KILv~GDvhG~~~-------~l~~kv~~l~~k~GpfD~li~~GDff~~~~--~~~~~~~~~l~g~~~~p~ptyfv~GNhe 75 (550)
+|++++|+|-..+ ...+.+.+...+. +.|+||++||+..... ...+.+.+.+....+.++|.++++||||
T Consensus 2 ~~~~~~D~q~~~~~~~~~~~~~~~~i~~~~~~~-~~d~iv~~GDl~~~~~~~~~~~~~~~~~~~l~~~~~p~~~~~GNHD 80 (214)
T cd07399 2 TLAVLPDTQYYTESYPEVFDAQTDWIVDNAEAL-NIAFVLHLGDIVDDGDNDAEWEAADKAFARLDKAGIPYSVLAGNHD 80 (214)
T ss_pred EEEEecCCCcCCcCCHHHHHHHHHHHHHHHHHc-CCCEEEECCCccCCCCCHHHHHHHHHHHHHHHHcCCcEEEECCCCc
Confidence 7999999995222 2333333322222 5799999999976433 2223334444322335699999999997
Q ss_pred ChHHHHHHhhccccccCcccCCceecCcEEEcCCCCeEEEcCeEEEEEeCccCCCCCCCCCCCHHHHHHHHH-hhcCCCC
Q 008885 76 GAAKVLLAASKNSANQGFKMDGFKVTDNLFWLKGSGNFTLHGLSVAYLSGRQSSEGQQFGTYSQDDVDALRA-LAEEPGI 154 (550)
Q Consensus 76 ~~~~~l~~l~~~~~~~~~~~~g~ei~~Nl~~Lg~~gv~~i~GlrIa~lgG~~~~~~~~~~~~te~di~~L~~-l~~~~~~ 154 (550)
.- + +|. .. .++++++-|.+ ++.....
T Consensus 81 ~~------~---------------------~ld-~~-------------------------~~~~ql~WL~~~L~~~~~~ 107 (214)
T cd07399 81 LV------L---------------------ALE-FG-------------------------PRDEVLQWANEVLKKHPDR 107 (214)
T ss_pred ch------h---------------------hCC-CC-------------------------CCHHHHHHHHHHHHHCCCC
Confidence 20 0 011 00 01333443443 2222222
Q ss_pred ccEEEeCCCCccccccccccccccccCCCCCCcHHHHHHHHHh-CCCEEEEccCCCccc
Q 008885 155 VDLFLTNEWPSGVTNKAAASDMLVGISDSSNTDSTVSELVAEI-KPRYHIAGSKGVFYA 212 (550)
Q Consensus 155 vDILLTh~wP~gi~~~~~~~~~~~~~~~~~~Gs~~i~~l~~~l-kPRYhf~Gh~~~f~e 212 (550)
-=|+++|.+|..-....+.. ... .....+...+.+|+++. +.+..|+||.|....
T Consensus 108 ~~iv~~H~p~~~~~~~~~~~-~~~--~~~~~~~~~~~~ll~~~~~V~~v~~GH~H~~~~ 163 (214)
T cd07399 108 PAILTTHAYLNCDDSRPDSI-DYD--SDVNDGQQIWDKLVKKNDNVFMVLSGHVHGAGR 163 (214)
T ss_pred CEEEEecccccCCCCcCccc-ccc--cccccHHHHHHHHHhCCCCEEEEEccccCCCce
Confidence 34899999987432111100 000 00124566788888877 688999999876543
No 64
>cd07386 MPP_DNA_pol_II_small_archeal_C archeal DNA polymerase II, small subunit, C-terminal metallophosphatase domain. The small subunit of the archeal DNA polymerase II contains a C-terminal metallophosphatase domain. This domain is thought to be functionally active because the active site residues required for phosphoesterase activity in other members of this superfamily are intact. The archeal replicative DNA polymerases are thought to possess intrinsic phosphatase activity that hydrolyzes the pyrophosphate released during nucleotide polymerization. This domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiestera
Probab=98.12 E-value=7.7e-06 Score=81.84 Aligned_cols=108 Identities=15% Similarity=0.227 Sum_probs=62.0
Q ss_pred EEEcCCC--CCh--HHHHHHH-HHHhhhcC---CCcEEEEecCCCCCCh---------------hhHHHHHHHhcccCCC
Q 008885 7 LLCGDVL--GRL--NQLFKRV-QSVNKSAG---PFDAVLCVGQFFPDSS---------------ELLDEFMNYVEGRSEI 63 (550)
Q Consensus 7 Lv~GDvh--G~~--~~l~~kv-~~l~~k~G---pfD~li~~GDff~~~~---------------~~~~~~~~~l~g~~~~ 63 (550)
++++|+| +.. ...+..+ +.++.... +.|+||++||++.... +....+.+++... ..
T Consensus 2 ~~iSDlHl~~~~~~~~~~~~l~~~l~~~~~~~~~~d~lvi~GDl~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L-~~ 80 (243)
T cd07386 2 VFISDVHVGSKTFLEDAFEKFVRWLNGEDDSASRVKYLIIAGDLVDGIGVYPGQEEELEILDIYEQYEEAAEYLSDV-PS 80 (243)
T ss_pred EEecccCCCchhhhHHHHHHHHHHHcCCcccccCccEEEEeCCcccccccCCcchhhhhhhhHHHHHHHHHHHHHhc-cc
Confidence 6899999 321 1122222 22222111 4799999999986310 1123455565432 23
Q ss_pred CccEEEEecCCCChHHHH------HHhhccccccCcccCCcee-cCcEEEcCCCCeEEEcCeEEEEEeCcc
Q 008885 64 PIPTYFIGDYGVGAAKVL------LAASKNSANQGFKMDGFKV-TDNLFWLKGSGNFTLHGLSVAYLSGRQ 127 (550)
Q Consensus 64 p~ptyfv~GNhe~~~~~l------~~l~~~~~~~~~~~~g~ei-~~Nl~~Lg~~gv~~i~GlrIa~lgG~~ 127 (550)
.+|+|+++||||.....+ ..+. . .+ ..|+.++.....++++|.+|.+..|..
T Consensus 81 ~~~v~~ipGNHD~~~~~~pq~~l~~~l~-----------~-~~~~~~v~~l~Np~~~~~~g~~i~~~~G~~ 139 (243)
T cd07386 81 HIKIIIIPGNHDAVRQAEPQPALPEEIR-----------K-LFLPGNVEFVSNPALVKIHGVDVLIYHGRS 139 (243)
T ss_pred CCeEEEeCCCCCcccccCCCCCccHHHH-----------h-hcCCCceEEeCCCCEEEECCEEEEEECCCC
Confidence 589999999998531110 1110 0 01 357888876566688999999888853
No 65
>cd07410 MPP_CpdB_N Escherichia coli CpdB and related proteins, N-terminal metallophosphatase domain. CpdB is a bacterial periplasmic protein with an N-terminal metallophosphatase domain and a C-terminal 3'-nucleotidase domain. This alignment model represents the N-terminal metallophosphatase domain, which has 2',3'-cyclic phosphodiesterase activity, hydrolyzing the 2',3'-cyclic phosphates of adenosine, guanosine, cytosine and uridine to yield nucleoside and phosphate. CpdB also hydrolyzes the chromogenic substrates p-nitrophenyl phosphate (PNPP), bis(PNPP) and p-nitrophenyl phosphorylcholine (NPPC). CpdB is thought to play a scavenging role during RNA hydrolysis by converting the non-transportable nucleotides produced by RNaseI to nucleosides which can easily enter a cell for use as a carbon source. This family also includes YfkN, a Bacillus subtilis nucleotide phosphoesterase with two copies of each of the metallophosphatase and 3'-nucleotidase domains. The N-terminal metallophos
Probab=98.10 E-value=0.00026 Score=72.24 Aligned_cols=205 Identities=12% Similarity=0.053 Sum_probs=110.5
Q ss_pred CEEEEEcCCCCCh----------------HHHHHHHHHHhhhcCCCcEEEE-ecCCCCCChh--hH--------HHHHHH
Q 008885 4 PRILLCGDVLGRL----------------NQLFKRVQSVNKSAGPFDAVLC-VGQFFPDSSE--LL--------DEFMNY 56 (550)
Q Consensus 4 ~KILv~GDvhG~~----------------~~l~~kv~~l~~k~GpfD~li~-~GDff~~~~~--~~--------~~~~~~ 56 (550)
++||.++|+||.+ ..+...++.+.+++ .|+|++ +||++..... .. ....+.
T Consensus 1 l~il~t~D~Hg~~~~~~~~~~~~~~~gg~~~l~~~i~~~r~~~--~~~l~ld~GD~~~gs~~~~~~~~~~~~~~~~~~~~ 78 (277)
T cd07410 1 LRILATSDLHGNLLPYDYYTDKPDASGGLARVATLIKKARAEN--PNTLLIDNGDTIQGSPLADYYAKIEDGDPHPMIAA 78 (277)
T ss_pred CeEEEEeccccceeCccccCCCcCCccCHHHHHHHHHHHHhcC--CCeEEEeCCccCCccHHHHHhhhcccCCCChHHHH
Confidence 4799999999987 33444555555443 367776 9999754210 00 112223
Q ss_pred hcccCCCCccEEEEecCCCChH--HHH-HHhhccccccCcccCCceecCcEEEcC-------CCCeEEEc-CeEEEEEeC
Q 008885 57 VEGRSEIPIPTYFIGDYGVGAA--KVL-LAASKNSANQGFKMDGFKVTDNLFWLK-------GSGNFTLH-GLSVAYLSG 125 (550)
Q Consensus 57 l~g~~~~p~ptyfv~GNhe~~~--~~l-~~l~~~~~~~~~~~~g~ei~~Nl~~Lg-------~~gv~~i~-GlrIa~lgG 125 (550)
+ ..+.. .+++.||||... +.+ +.+.. .+...++.|+.+.. ..-+++++ |+||+.+|=
T Consensus 79 l---n~~g~-d~~~lGNHe~d~g~~~l~~~~~~--------~~~~~l~aNv~~~~~~~~~~~~~~i~~~~~g~kVgviG~ 146 (277)
T cd07410 79 M---NALGY-DAGTLGNHEFNYGLDYLDKVIKQ--------ANFPVLSANVIDADTGEPFLKPYVILERDVGVKVGIIGL 146 (277)
T ss_pred H---HhcCC-CEEeecccCcccCHHHHHHHHHh--------CCCCEEEEEEEeCCCCCcccCCEEEEEecCCCEEEEEec
Confidence 2 33444 477889999753 222 22221 12346788888764 12355789 999999987
Q ss_pred ccCCCCC--C-----CCCCCHHHHHHHHH----hhcCCCCcc--EEEeCCCCccccccccccccccccCCCCCCcHHHHH
Q 008885 126 RQSSEGQ--Q-----FGTYSQDDVDALRA----LAEEPGIVD--LFLTNEWPSGVTNKAAASDMLVGISDSSNTDSTVSE 192 (550)
Q Consensus 126 ~~~~~~~--~-----~~~~te~di~~L~~----l~~~~~~vD--ILLTh~wP~gi~~~~~~~~~~~~~~~~~~Gs~~i~~ 192 (550)
....... . ...+++ .++++++ +.. .++| |+|+|.--..-.. + .........+
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~d-~~~~~~~~v~~lr~--~~~D~IIvl~H~g~~~~~~-------~-----~~~~~~~~~~ 211 (277)
T cd07410 147 TTPQIPNWEKPNLIGGLKFTD-PVETAKKYVPKLRA--EGADVVVVLAHGGFERDLE-------E-----SLTGENAAYE 211 (277)
T ss_pred CCcccccccCcccCCCcEEcC-HHHHHHHHHHHHHH--cCCCEEEEEecCCcCCCcc-------c-----ccCCccHHHH
Confidence 5331110 0 012221 1222222 211 3466 4677763322100 0 0122334456
Q ss_pred HHHH-hCCCEEEEccCCCccccccccCCCCcceeEEEEcCCCCCcccceeEEEeccC
Q 008885 193 LVAE-IKPRYHIAGSKGVFYAREPYSNVDAVHVTRFLGLAPVGNKEKQKFIHALSPT 248 (550)
Q Consensus 193 l~~~-lkPRYhf~Gh~~~f~er~Py~~~~~~~~TRFI~La~~g~~~K~Kw~yAf~i~ 248 (550)
|+++ -..-..|.||.|..+..+ ....|.++.-|..|. ++--++|+
T Consensus 212 la~~~~~vD~IlgGHsH~~~~~~------~~~~~~v~q~g~~g~-----~vg~l~l~ 257 (277)
T cd07410 212 LAEEVPGIDAILTGHQHRRFPGP------TVNGVPVVQPGNWGS-----HLGVIDLT 257 (277)
T ss_pred HHhcCCCCcEEEeCCCccccccC------CcCCEEEEcCChhhC-----EEEEEEEE
Confidence 6665 356788899988765421 234688888777765 66655554
No 66
>cd07423 MPP_PrpE Bacillus subtilis PrpE and related proteins, metallophosphatase domain. PrpE (protein phosphatase E) is a bacterial member of the PPP (phosphoprotein phosphatase) family of serine/threonine phosphatases and a key signal transduction pathway component controlling the expression of spore germination receptors GerA and GerK in Bacillus subtilis. PrpE is closely related to ApaH (also known symmetrical Ap(4)A hydrolase and bis(5'nucleosyl)-tetraphosphatase). PrpE has specificity for phosphotyrosine only, unlike the serine/threonine phosphatases to which it is related. The Bacilli members of this family are single domain proteins while the other members have N- and C-terminal domains in addition to this phosphatase domain. The PPP (phosphoprotein phosphatase) family, to which PrpE belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpA/Prp
Probab=97.94 E-value=1.5e-05 Score=79.34 Aligned_cols=77 Identities=13% Similarity=0.110 Sum_probs=51.0
Q ss_pred CEEEEEcCCCCChHHHHHHHHHHhhh-------cC-CCcEEEEecCCCCCChhhHHHHHHHhcccCCCCccEEEEecCCC
Q 008885 4 PRILLCGDVLGRLNQLFKRVQSVNKS-------AG-PFDAVLCVGQFFPDSSELLDEFMNYVEGRSEIPIPTYFIGDYGV 75 (550)
Q Consensus 4 ~KILv~GDvhG~~~~l~~kv~~l~~k-------~G-pfD~li~~GDff~~~~~~~~~~~~~l~g~~~~p~ptyfv~GNhe 75 (550)
|||.|+||+||++++|.+.++.+.-. .+ +.|.+|++||+..-... ..+..+++.... ..-.+++|-||||
T Consensus 1 ~~i~vigDIHG~~~~L~~ll~~~~~~~~~~~~~~~~~~d~lv~lGDlIDrG~~-s~evl~~l~~l~-~~~~~~~v~GNHE 78 (234)
T cd07423 1 GPFDIIGDVHGCYDELEELLEKLGYRIKRVGTVTHPEGRRAVFVGDLVDRGPD-SPEVLRLVMSMV-AAGAALCVPGNHD 78 (234)
T ss_pred CCeEEEEECCCCHHHHHHHHHHcCCccccCccccCCCCCEEEEECCccCCCCC-HHHHHHHHHHHh-hCCcEEEEECCcH
Confidence 68999999999999988888776321 11 36999999999764333 223444442111 1235889999998
Q ss_pred ChHHHHHHh
Q 008885 76 GAAKVLLAA 84 (550)
Q Consensus 76 ~~~~~l~~l 84 (550)
. .++..+
T Consensus 79 ~--~l~~~~ 85 (234)
T cd07423 79 N--KLYRKL 85 (234)
T ss_pred H--HHHHHh
Confidence 3 344433
No 67
>TIGR00619 sbcd exonuclease SbcD. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.94 E-value=2.4e-05 Score=78.95 Aligned_cols=74 Identities=23% Similarity=0.307 Sum_probs=47.3
Q ss_pred CEEEEEcCCCC-C----------hHHHHHHHHHHhhhcCCCcEEEEecCCCCCCh---hhHHHHHHHhcccCCCC-ccEE
Q 008885 4 PRILLCGDVLG-R----------LNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSS---ELLDEFMNYVEGRSEIP-IPTY 68 (550)
Q Consensus 4 ~KILv~GDvhG-~----------~~~l~~kv~~l~~k~GpfD~li~~GDff~~~~---~~~~~~~~~l~g~~~~p-~pty 68 (550)
||||.++|+|- . ....++++-.+..+. ..|+||++||+|.... .+...+.+++....... +|+|
T Consensus 1 mkilh~SD~Hlg~~~~~~~~~~~~~~~l~~l~~~~~~~-~~D~lli~GDi~d~~~p~~~~~~~~~~~l~~l~~~~~i~v~ 79 (253)
T TIGR00619 1 MRILHTSDWHLGKTLEGVSRLAEQKAFLDDLLEFAKAE-QIDALLVAGDVFDTANPPAEAQELFNAFFRNLSDANPIPIV 79 (253)
T ss_pred CEEEEEhhhcCCCccCCCChHHHHHHHHHHHHHHHHHc-CCCEEEECCccCCCCCCCHHHHHHHHHHHHHHHhcCCceEE
Confidence 79999999993 2 122334443333333 4899999999987532 22233445554333444 8999
Q ss_pred EEecCCCChH
Q 008885 69 FIGDYGVGAA 78 (550)
Q Consensus 69 fv~GNhe~~~ 78 (550)
+|.||||...
T Consensus 80 ~i~GNHD~~~ 89 (253)
T TIGR00619 80 VISGNHDSAQ 89 (253)
T ss_pred EEccCCCChh
Confidence 9999999753
No 68
>cd07424 MPP_PrpA_PrpB PrpA and PrpB, metallophosphatase domain. PrpA and PrpB are bacterial type I serine/threonine and tyrosine phosphatases thought to modulate the expression of proteins that protect the cell upon accumulation of misfolded proteins in the periplasm. The PPP (phosphoprotein phosphatase) family, to which PrpA and PrpB belong, is one of two known protein phosphatase families specific for serine and threonine. This family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all
Probab=97.94 E-value=2.1e-05 Score=76.74 Aligned_cols=66 Identities=18% Similarity=0.174 Sum_probs=46.8
Q ss_pred CEEEEEcCCCCChHHHHHHHHHHhhhcCCCcEEEEecCCCCCChhhHHHHHHHhcccCCCCccEEEEecCCCC
Q 008885 4 PRILLCGDVLGRLNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSSELLDEFMNYVEGRSEIPIPTYFIGDYGVG 76 (550)
Q Consensus 4 ~KILv~GDvhG~~~~l~~kv~~l~~k~GpfD~li~~GDff~~~~~~~~~~~~~l~g~~~~p~ptyfv~GNhe~ 76 (550)
.||+++||+||+++.+.+.++.+..+ ...|.+|++||+..-.... .+..+++. . .++++|.||||.
T Consensus 1 ~ri~~isDiHg~~~~l~~~l~~~~~~-~~~d~~~~~GD~v~~g~~~-~~~~~~l~---~--~~~~~v~GNhe~ 66 (207)
T cd07424 1 GRDFVVGDIHGHYSLLQKALDAVGFD-PARDRLISVGDLIDRGPES-LACLELLL---E--PWFHAVRGNHEQ 66 (207)
T ss_pred CCEEEEECCCCCHHHHHHHHHHcCCC-CCCCEEEEeCCcccCCCCH-HHHHHHHh---c--CCEEEeECCChH
Confidence 37999999999999877666665432 2479999999996533222 23445542 2 368999999984
No 69
>cd00845 MPP_UshA_N_like Escherichia coli UshA-like family, N-terminal metallophosphatase domain. This family includes the bacterial enzyme UshA, and related enzymes including SoxB, CpdB, YhcR, and CD73. All members have a similar domain architecture which includes an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich
Probab=97.85 E-value=0.0014 Score=65.64 Aligned_cols=201 Identities=12% Similarity=0.052 Sum_probs=106.3
Q ss_pred CEEEEEcCCCCCh---------HHHHHHHHHHhhhcCCCcEEEEecCCCCCChhh----HHHHHHHhcccCCCCccEEEE
Q 008885 4 PRILLCGDVLGRL---------NQLFKRVQSVNKSAGPFDAVLCVGQFFPDSSEL----LDEFMNYVEGRSEIPIPTYFI 70 (550)
Q Consensus 4 ~KILv~GDvhG~~---------~~l~~kv~~l~~k~GpfD~li~~GDff~~~~~~----~~~~~~~l~g~~~~p~ptyfv 70 (550)
++|+.++|+||.+ .++...++++++.+ +-.+++..||++...... ...+.+.+ ..++ ..+++
T Consensus 1 l~i~~~sD~hg~~~~~~~~~g~~~l~~~v~~~~~~~-~~~l~v~~GD~~~~~~~~~~~~~~~~~~~l---~~~g-~d~~~ 75 (252)
T cd00845 1 LTILHTNDLHGHFEPAGGVGGAARLATLIKEERAEN-ENTLLLDAGDNFDGSPPSTATKGEANIELM---NALG-YDAVT 75 (252)
T ss_pred CEEEEecccccCccccCCcCCHHHHHHHHHHHHhcC-CCeEEEeCCccCCCccchhccCCcHHHHHH---HhcC-CCEEe
Confidence 4899999999876 45555566665543 434889999996542210 11223333 2333 46788
Q ss_pred ecCCCChHH---HHHHhhccccccCcccCCceecCcEEEcC---------CCCeEEEcCeEEEEEeCccCCCCC-----C
Q 008885 71 GDYGVGAAK---VLLAASKNSANQGFKMDGFKVTDNLFWLK---------GSGNFTLHGLSVAYLSGRQSSEGQ-----Q 133 (550)
Q Consensus 71 ~GNhe~~~~---~l~~l~~~~~~~~~~~~g~ei~~Nl~~Lg---------~~gv~~i~GlrIa~lgG~~~~~~~-----~ 133 (550)
.||||.... +.+.+.. .+...++.|+.+-+ ...+++++|+||+.+|-....... .
T Consensus 76 ~GNHe~d~g~~~l~~~~~~--------~~~~~l~aNv~~~~~~~~~~~~~~~~i~~~~g~kIgiiG~~~~~~~~~~~~~~ 147 (252)
T cd00845 76 IGNHEFDYGLDALAELYKD--------ANFPVLSANLYDKDTGTGPPWAKPYKIIEVDGVKIGVIGLTTPDTPTYTPLGW 147 (252)
T ss_pred eccccccccHHHHHHHHHh--------CCCCEEEEeeeccCCCCCCCCcCCeEEEEECCEEEEEEEeccccceeecCCCc
Confidence 899996422 2222221 12335677776543 123567899999999875432111 0
Q ss_pred CCCCC-HHHHHHHHH-hhcCCCCccE--EEeCCCCccccccccccccccccCCCCCCcHHHHHHHHH-hCCCEEEEccCC
Q 008885 134 FGTYS-QDDVDALRA-LAEEPGIVDL--FLTNEWPSGVTNKAAASDMLVGISDSSNTDSTVSELVAE-IKPRYHIAGSKG 208 (550)
Q Consensus 134 ~~~~t-e~di~~L~~-l~~~~~~vDI--LLTh~wP~gi~~~~~~~~~~~~~~~~~~Gs~~i~~l~~~-lkPRYhf~Gh~~ 208 (550)
...+. ++..+++.+ ......++|+ +|+| ||..- -.++++. -..-..++||.|
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~D~vIvl~H-~g~~~----------------------~~~la~~~~giDlvlggH~H 204 (252)
T cd00845 148 IIGLPFEDLAEAVAVAEELLAEGADVIILLSH-LGLDD----------------------DEELAEEVPGIDVILGGHTH 204 (252)
T ss_pred ccCceecCHHHHHHHHHHHHhCCCCEEEEEec-cCccc----------------------hHHHHhcCCCccEEEcCCcC
Confidence 01111 111222221 1111245564 5666 44431 1123322 356688899988
Q ss_pred CccccccccCCCCcceeEEEEcCCCCCcccceeEEEeccCCC
Q 008885 209 VFYAREPYSNVDAVHVTRFLGLAPVGNKEKQKFIHALSPTPA 250 (550)
Q Consensus 209 ~f~er~Py~~~~~~~~TRFI~La~~g~~~K~Kw~yAf~i~p~ 250 (550)
..+... .....|..+--|..+ +++-.+.|+..
T Consensus 205 ~~~~~~-----~~~~~~~v~~~g~~~-----~~~~~~~l~~~ 236 (252)
T cd00845 205 HLLEEP-----EVVNGTLIVQAGKYG-----KYVGEIDLELD 236 (252)
T ss_pred cccCCC-----cccCCEEEEeCChhH-----ceEEEEEEEEE
Confidence 644311 123457777666544 37777777644
No 70
>KOG4359 consensus Protein kinase C inhibitor-like protein [General function prediction only]
Probab=97.79 E-value=3.9e-05 Score=68.41 Aligned_cols=104 Identities=15% Similarity=0.193 Sum_probs=62.4
Q ss_pred CCCCcccCCCC-CC-CcceEEEECCEEEEEecCCCCCCCeEEEEeccccCCCCCCCHHHHHHHHHHHHHHHHHHhhcCCc
Q 008885 388 SKECWFCLSSP-SV-ESHLIVSVGEYYYCALPKGPLVEDHVLVIPVEHVPNTISTSPECEKELGRFQNSLMMYYKNQGKE 465 (550)
Q Consensus 388 ~~~C~FC~~~~-~~-~~hliis~g~~~yl~l~kgpl~~gH~lIiP~~H~~s~~~l~~~~~~Ei~~~~~~L~~~~~~~~~~ 465 (550)
.+.|.||.+.. .. .+.+..-..+++.++=++.|-..-|-|+||.+|+.+..+|..+...=+++..+.=+..|.... .
T Consensus 30 ~~~C~FCDia~r~~~~~ell~~En~~~V~fkDikPaA~~HYLvipK~Hi~~~~~L~k~~V~Lve~m~~~G~~~l~r~~-~ 108 (166)
T KOG4359|consen 30 KSTCVFCDIAGRQDPGTELLHCENEDLVCFKDIKPAATHHYLVVPKKHIGNCRTLRKDQVELVENMVTVGKTILERNN-F 108 (166)
T ss_pred CCceEEEEeecccCCCCceeEecCCcEEEEecCCccccceEEEechHHcCChhhcchhhHHHHHHHHHHHHHHHHHhc-c
Confidence 34799998763 22 233333344444445567999999999999999999999976644444433333333333221 1
Q ss_pred eEEEe-ecCC------CcCeEEEEEeecCCCchH
Q 008885 466 AVFFE-WLSK------RGTHANLQAVPIPTSKAA 492 (550)
Q Consensus 466 ~v~~E-~~~~------~~~H~hi~~vPvp~~~~~ 492 (550)
+++=| ++.. .+.|+|+|+|--|.+++-
T Consensus 109 td~~~~r~GFHLPPf~SV~HLHlH~I~P~~DMgf 142 (166)
T KOG4359|consen 109 TDFTNVRMGFHLPPFCSVSHLHLHVIAPVDDMGF 142 (166)
T ss_pred CCchheeEeccCCCcceeeeeeEeeecchHHhch
Confidence 22222 2222 256999999955555543
No 71
>TIGR00668 apaH bis(5'-nucleosyl)-tetraphosphatase (symmetrical). Alternate names include diadenosine-tetraphosphatase and Ap4A hydrolase.
Probab=97.77 E-value=4.7e-05 Score=77.36 Aligned_cols=68 Identities=18% Similarity=0.188 Sum_probs=48.3
Q ss_pred CEEEEEcCCCCChHHHHHHHHHHhhhcCCCcEEEEecCCCCCChhhHHHHHHHhcccCCCCccEEEEecCCCC
Q 008885 4 PRILLCGDVLGRLNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSSELLDEFMNYVEGRSEIPIPTYFIGDYGVG 76 (550)
Q Consensus 4 ~KILv~GDvhG~~~~l~~kv~~l~~k~GpfD~li~~GDff~~~~~~~~~~~~~l~g~~~~p~ptyfv~GNhe~ 76 (550)
|.++||||+||++++|.+.++++.-. ..-|.++++||+..-+.... +..+++ ...+-.+++|.||||.
T Consensus 1 m~~YvIGDIHGc~daL~~LL~~i~f~-~~~D~l~~lGDlVdRGP~sl-evL~~l---~~l~~~~~~VlGNHD~ 68 (279)
T TIGR00668 1 MATYLIGDLHGCYDELQALLERVEFD-PGQDTLWLTGDLVARGPGSL-EVLRYV---KSLGDAVRLVLGNHDL 68 (279)
T ss_pred CcEEEEEcccCCHHHHHHHHHHhCcC-CCCCEEEEeCCccCCCCCHH-HHHHHH---HhcCCCeEEEEChhHH
Confidence 45999999999999988888777422 23699999999976443322 344454 2333346799999984
No 72
>PRK11439 pphA serine/threonine protein phosphatase 1; Provisional
Probab=97.76 E-value=4.5e-05 Score=75.18 Aligned_cols=72 Identities=19% Similarity=0.215 Sum_probs=51.3
Q ss_pred CEEEEEcCCCCChHHHHHHHHHHhhhcCCCcEEEEecCCCCCChhhHHHHHHHhcccCCCCccEEEEecCCCChHHHHHH
Q 008885 4 PRILLCGDVLGRLNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSSELLDEFMNYVEGRSEIPIPTYFIGDYGVGAAKVLLA 83 (550)
Q Consensus 4 ~KILv~GDvhG~~~~l~~kv~~l~~k~GpfD~li~~GDff~~~~~~~~~~~~~l~g~~~~p~ptyfv~GNhe~~~~~l~~ 83 (550)
.||+|+||+||+++.|.+.++.+..+ ...|.+|++||+..-.+. ..+..+++. + ..+++|.||||. .+++.
T Consensus 17 ~ri~vigDIHG~~~~L~~lL~~i~~~-~~~D~li~lGDlvDrGp~-s~~vl~~l~---~--~~~~~v~GNHE~--~~l~~ 87 (218)
T PRK11439 17 RHIWLVGDIHGCFEQLMRKLRHCRFD-PWRDLLISVGDLIDRGPQ-SLRCLQLLE---E--HWVRAVRGNHEQ--MALDA 87 (218)
T ss_pred CeEEEEEcccCCHHHHHHHHHhcCCC-cccCEEEEcCcccCCCcC-HHHHHHHHH---c--CCceEeeCchHH--HHHHH
Confidence 48999999999999998888887543 236999999999754333 234555653 2 236799999973 45554
Q ss_pred h
Q 008885 84 A 84 (550)
Q Consensus 84 l 84 (550)
+
T Consensus 88 ~ 88 (218)
T PRK11439 88 L 88 (218)
T ss_pred H
Confidence 4
No 73
>PRK10966 exonuclease subunit SbcD; Provisional
Probab=97.76 E-value=7.5e-05 Score=80.43 Aligned_cols=75 Identities=15% Similarity=0.152 Sum_probs=46.8
Q ss_pred CEEEEEcCCCC-C----------hHHHHHHHHHHhhhcCCCcEEEEecCCCCCCh---hhHHHHHHHhcccCCCCccEEE
Q 008885 4 PRILLCGDVLG-R----------LNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSS---ELLDEFMNYVEGRSEIPIPTYF 69 (550)
Q Consensus 4 ~KILv~GDvhG-~----------~~~l~~kv~~l~~k~GpfD~li~~GDff~~~~---~~~~~~~~~l~g~~~~p~ptyf 69 (550)
||||.++|+|- . ...+++++..+..+. ..|+||++||+|.... .....+.+++......++|+|+
T Consensus 1 mkilh~SDlHlG~~~~~~~~~~~~~~~l~~l~~~i~~~-~~D~viIaGDifD~~~p~~~a~~~~~~~l~~L~~~~~~v~~ 79 (407)
T PRK10966 1 MRILHTSDWHLGQNFYSKSRAAEHQAFLDWLLEQVQEH-QVDAIIVAGDIFDTGSPPSYARELYNRFVVNLQQTGCQLVV 79 (407)
T ss_pred CEEEEEcccCCCCcccCcccHHHHHHHHHHHHHHHHhc-CCCEEEECCccccCCCCcHHHHHHHHHHHHHHHhcCCcEEE
Confidence 79999999993 2 112233333332233 5899999999986421 1122233444333456789999
Q ss_pred EecCCCChHH
Q 008885 70 IGDYGVGAAK 79 (550)
Q Consensus 70 v~GNhe~~~~ 79 (550)
|.||||....
T Consensus 80 I~GNHD~~~~ 89 (407)
T PRK10966 80 LAGNHDSVAT 89 (407)
T ss_pred EcCCCCChhh
Confidence 9999997543
No 74
>cd07421 MPP_Rhilphs Rhilph phosphatases, metallophosphatase domain. Rhilphs (Rhizobiales/ Rhodobacterales/ Rhodospirillaceae-like phosphatases) are a phylogenetically distinct group of PPP (phosphoprotein phosphatases), found only in land plants. They are named for their close relationship to to PPP phosphatases from alpha-Proteobacteria, including Rhizobiales, Rhodobacterales and Rhodospirillaceae. The PPP (phosphoprotein phosphatase) family, to which the Rhilphs belong, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central rol
Probab=97.70 E-value=0.00011 Score=75.11 Aligned_cols=71 Identities=13% Similarity=0.210 Sum_probs=47.3
Q ss_pred EEEEEcCCCCChHHHHHHHHHHhhhc----CCCcEEEEecCCCCCChhhHHHHHHHhcc-cCCCCc-cEEEEecCCCC
Q 008885 5 RILLCGDVLGRLNQLFKRVQSVNKSA----GPFDAVLCVGQFFPDSSELLDEFMNYVEG-RSEIPI-PTYFIGDYGVG 76 (550)
Q Consensus 5 KILv~GDvhG~~~~l~~kv~~l~~k~----GpfD~li~~GDff~~~~~~~~~~~~~l~g-~~~~p~-ptyfv~GNhe~ 76 (550)
+|+++||+||+++.|-+.++.+.... ...+.+|++||+..-.... .+..++|.. ...-+. .++|+.||||.
T Consensus 3 ~iyaIGDIHG~~d~L~~lL~~I~~d~~~~~~~~~~iVfLGDyVDRGPdS-~eVld~L~~l~~~~~~~~vv~LrGNHE~ 79 (304)
T cd07421 3 VVICVGDIHGYISKLNNLWLNLQSALGPSDFASALVIFLGDYCDRGPET-RKVIDFLISLPEKHPKQRHVFLCGNHDF 79 (304)
T ss_pred eEEEEEeccCCHHHHHHHHHHhhhhcCcCcCCCcEEEEeCCcCCCCCCH-HHHHHHHHHhhhcccccceEEEecCChH
Confidence 69999999999998888777776542 1357899999996533222 233343322 122222 47899999984
No 75
>cd07422 MPP_ApaH Escherichia coli ApaH and related proteins, metallophosphatase domain. ApaH (also known as symmetrically cleaving Ap4A hydrolase and bis(5'nucleosyl)-tetraphosphatase) is a bacterial member of the PPP (phosphoprotein phosphatase) family of serine/threonine phosphatases that hydrolyzes the nucleotide-signaling molecule diadenosine tetraphosphate (Ap(4)A) into two ADP and also hydrolyzes Ap(5)A, Gp(4)G, and other extending compounds. Null mutations in apaH result in high intracellular levels of Ap(4)A which correlate with multiple phenotypes, including a decreased expression of catabolite-repressible genes, a reduction in the expression of flagellar operons, and an increased sensitivity to UV and heat. Ap4A hydrolase is important in responding to heat shock and oxidative stress via regulating the concentration of Ap4A in bacteria. Ap4A hydrolase is also thought to play a role in siderophore production, but the mechanism by which ApaH interacts with siderophore pathwa
Probab=97.70 E-value=6.9e-05 Score=75.72 Aligned_cols=66 Identities=17% Similarity=0.214 Sum_probs=47.1
Q ss_pred EEEEcCCCCChHHHHHHHHHHhhhcCCCcEEEEecCCCCCChhhHHHHHHHhcccCCCCccEEEEecCCCC
Q 008885 6 ILLCGDVLGRLNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSSELLDEFMNYVEGRSEIPIPTYFIGDYGVG 76 (550)
Q Consensus 6 ILv~GDvhG~~~~l~~kv~~l~~k~GpfD~li~~GDff~~~~~~~~~~~~~l~g~~~~p~ptyfv~GNhe~ 76 (550)
++|+||+||+++.|.+.++++.... ..|.++++||+..-++... +..+++ .++.-.+++|.||||.
T Consensus 1 ~yvIGDIHG~~~~L~~LL~~i~~~~-~~D~Li~lGDlVdRGp~s~-evl~~l---~~l~~~v~~VlGNHD~ 66 (257)
T cd07422 1 TYAIGDIQGCYDELQRLLEKINFDP-AKDRLWLVGDLVNRGPDSL-ETLRFV---KSLGDSAKTVLGNHDL 66 (257)
T ss_pred CEEEECCCCCHHHHHHHHHhcCCCC-CCCEEEEecCcCCCCcCHH-HHHHHH---HhcCCCeEEEcCCchH
Confidence 5899999999999877777764322 3699999999976443333 344554 2333468899999985
No 76
>PRK13625 bis(5'-nucleosyl)-tetraphosphatase PrpE; Provisional
Probab=97.67 E-value=7.8e-05 Score=74.86 Aligned_cols=77 Identities=12% Similarity=0.111 Sum_probs=50.3
Q ss_pred CEEEEEcCCCCChHHHHHHHHHHhhhc-------CCCcEEEEecCCCCCChhhHHHHHHHhcccCCCCccEEEEecCCCC
Q 008885 4 PRILLCGDVLGRLNQLFKRVQSVNKSA-------GPFDAVLCVGQFFPDSSELLDEFMNYVEGRSEIPIPTYFIGDYGVG 76 (550)
Q Consensus 4 ~KILv~GDvhG~~~~l~~kv~~l~~k~-------GpfD~li~~GDff~~~~~~~~~~~~~l~g~~~~p~ptyfv~GNhe~ 76 (550)
||+.|+||+||.++.|.+.++++.-.. ..-|.+|++||+..-++... +..+++.... ..-.+++|-||||.
T Consensus 1 ~~~~vIGDIHG~~~~L~~lL~~~~~~~~~~~~~~~~~d~li~lGDliDRGp~S~-~vl~~~~~~~-~~~~~~~l~GNHE~ 78 (245)
T PRK13625 1 MKYDIIGDIHGCYQEFQALTEKLGYNWSSGLPVHPDQRKLAFVGDLTDRGPHSL-RMIEIVWELV-EKKAAYYVPGNHCN 78 (245)
T ss_pred CceEEEEECccCHHHHHHHHHHcCCCcccCcccCCCCCEEEEECcccCCCcChH-HHHHHHHHHh-hCCCEEEEeCccHH
Confidence 689999999999999888787754321 12479999999975433222 2333332111 22368999999973
Q ss_pred hHHHHHHh
Q 008885 77 AAKVLLAA 84 (550)
Q Consensus 77 ~~~~l~~l 84 (550)
.++..+
T Consensus 79 --~~l~~~ 84 (245)
T PRK13625 79 --KLYRFF 84 (245)
T ss_pred --HHHHHH
Confidence 455544
No 77
>COG0420 SbcD DNA repair exonuclease [DNA replication, recombination, and repair]
Probab=97.67 E-value=0.00011 Score=78.59 Aligned_cols=74 Identities=22% Similarity=0.255 Sum_probs=48.7
Q ss_pred CEEEEEcCCCCC---------hHHHHHHHHHH---hhhcCCCcEEEEecCCCCCC---hhhHHHHHHHhcccCCCCccEE
Q 008885 4 PRILLCGDVLGR---------LNQLFKRVQSV---NKSAGPFDAVLCVGQFFPDS---SELLDEFMNYVEGRSEIPIPTY 68 (550)
Q Consensus 4 ~KILv~GDvhG~---------~~~l~~kv~~l---~~k~GpfD~li~~GDff~~~---~~~~~~~~~~l~g~~~~p~pty 68 (550)
||||.++|+|=. ++..++.+..+ .++. ..|+||++||+|... ..+...+.+.+.-.....+|+|
T Consensus 1 mkilHtSD~HLG~~~~~~~~r~~d~~~~f~~~l~~a~~~-~vD~vliAGDlFd~~~Ps~~a~~~~~~~l~~l~~~~Ipv~ 79 (390)
T COG0420 1 MKILHTSDWHLGSKQLNLPSRLEDQKKAFDELLEIAKEE-KVDFVLIAGDLFDTNNPSPRALKLFLEALRRLKDAGIPVV 79 (390)
T ss_pred CeeEEecccccchhhccCccchHHHHHHHHHHHHHHHHc-cCCEEEEccccccCCCCCHHHHHHHHHHHHHhccCCCcEE
Confidence 799999999954 22222222222 2223 479999999999752 2334444455443356789999
Q ss_pred EEecCCCChH
Q 008885 69 FIGDYGVGAA 78 (550)
Q Consensus 69 fv~GNhe~~~ 78 (550)
.|.||||.+.
T Consensus 80 ~I~GNHD~~~ 89 (390)
T COG0420 80 VIAGNHDSPS 89 (390)
T ss_pred EecCCCCchh
Confidence 9999999764
No 78
>PF04676 CwfJ_C_2: Protein similar to CwfJ C-terminus 2; InterPro: IPR006767 This group of sequences contain a conserved C-terminal domain which is found in the Schizosaccharomyces pombe (Fission yeast) protein Cwf19 (Q09909 from SWISSPROT) and its homologues. Cwf19 is part of the Cdc5p complex involved in mRNA splicing []. This domain is found in association with IPR006768 from INTERPRO, which is generally N-terminal and adjacent to this domain.
Probab=97.66 E-value=4.1e-05 Score=65.97 Aligned_cols=42 Identities=21% Similarity=0.525 Sum_probs=34.1
Q ss_pred ccccc--cCCCCcchhhhhhhhcCCCCCeEEEEcC--CCeeeeecC
Q 008885 508 KFLAT--KSSKSSDGRRSLRAQFDRNCSFFYVELP--EGFGRLAEH 549 (550)
Q Consensus 508 ~~~~~--~~~~~~~~~~~l~~~i~~~~pYf~ve~~--~G~~~v~e~ 549 (550)
||++| ++.+...++.++++++|+++|||||+|+ .|++||+|+
T Consensus 1 ews~n~~kk~~~~~~~~~~~~~~~~~~~Yf~V~~~~~~~~~~vie~ 46 (98)
T PF04676_consen 1 EWSQNEKKKLIDTSKKKGLRRSIPKGFPYFHVEFPDGKGYAHVIED 46 (98)
T ss_pred CccccccCCcccccChHHHHHhcCCCCCEEEEEEeCCCEEEEECCc
Confidence 69988 6655444468999999999999999996 577788875
No 79
>cd07411 MPP_SoxB_N Thermus thermophilus SoxB and related proteins, N-terminal metallophosphatase domain. SoxB (sulfur oxidation protein B) is a periplasmic thiosulfohydrolase and an essential component of the sulfur oxidation pathway in archaea and bacteria. SoxB has a dinuclear manganese cluster and is thought to catalyze the release of sulfate from a protein-bound cysteine S-thiosulfonate. SoxB is expressed from the sox (sulfur oxidation) gene cluster, which encodes 15 other sox genes, and has two domains, an N-terminal metallophosphatase domain and a C-terminal 5'-nucleotidase domain. SoxB binds the SoxYZ complex and is thought to function as a sulfate-thiohydrolase. SoxB is closely related to the UshA, YchR, and CpdB proteins, all of which have the same two-domain architecture. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzy
Probab=97.65 E-value=0.0076 Score=61.09 Aligned_cols=199 Identities=13% Similarity=0.081 Sum_probs=103.2
Q ss_pred CEEEEEcCCCCChHH----------------------HHHHHHHHhhhcCCCcEEE-EecCCCCCChhh-H---HHHHHH
Q 008885 4 PRILLCGDVLGRLNQ----------------------LFKRVQSVNKSAGPFDAVL-CVGQFFPDSSEL-L---DEFMNY 56 (550)
Q Consensus 4 ~KILv~GDvhG~~~~----------------------l~~kv~~l~~k~GpfD~li-~~GDff~~~~~~-~---~~~~~~ 56 (550)
+.||.++|+||.+.. +...++++.+.. ..|+|+ -+||++...... . ..+.+.
T Consensus 1 l~il~t~D~Hg~~~~~~~~~~~~~~~~~~~~~gG~~r~~~~v~~~~~~~-~~~~l~l~~GD~~~gs~~~~~~~g~~~~~~ 79 (264)
T cd07411 1 LTLLHINDLHGQLIPHYELEPSNLLARVFGMAGGFAHIATLIKRIRAER-NPNTLLLDGGDTWQGSGEALYTRGQAMVDA 79 (264)
T ss_pred CEEEEEcccccCccccccccccccccccccccCcHHHHHHHHHHHHHhc-CCCeEEEeCCCccCCChHHhhcCChhHHHH
Confidence 369999999997533 233334433331 357775 599997643210 0 112233
Q ss_pred hcccCCCCccEEEEecCCCChH--H-HHHHhhccccccCcccCCceecCcEEEcCC-------CCeEEEcCeEEEEEeCc
Q 008885 57 VEGRSEIPIPTYFIGDYGVGAA--K-VLLAASKNSANQGFKMDGFKVTDNLFWLKG-------SGNFTLHGLSVAYLSGR 126 (550)
Q Consensus 57 l~g~~~~p~ptyfv~GNhe~~~--~-~l~~l~~~~~~~~~~~~g~ei~~Nl~~Lg~-------~gv~~i~GlrIa~lgG~ 126 (550)
+ .. +...++.||||... . +...+.. .+-..++.|+.+-.. .-+++.+|+||+.+|-.
T Consensus 80 l---~~--~g~da~~GNHefd~g~~~l~~~~~~--------~~~~~l~aN~~~~~~~~~~~~~~~i~~~~g~kVgviG~~ 146 (264)
T cd07411 80 L---NA--LGVDAMVGHWEFTYGPERVRELFGR--------LNWPFLAANVYDDEAGERVFPPYRIKEVGGVKIGVIGQT 146 (264)
T ss_pred H---Hh--hCCeEEecccccccCHHHHHHHHhh--------CCCCEEEEEEEeCCCCCcccCCEEEEEECCEEEEEEEec
Confidence 3 33 44444459999652 1 2222221 123467888876431 23446799999999976
Q ss_pred cCCCCC-----C--CCCCC--HHHHHHH-HHhhcCCCCccE--EEeCCCCccccccccccccccccCCCCCCcHHHHHHH
Q 008885 127 QSSEGQ-----Q--FGTYS--QDDVDAL-RALAEEPGIVDL--FLTNEWPSGVTNKAAASDMLVGISDSSNTDSTVSELV 194 (550)
Q Consensus 127 ~~~~~~-----~--~~~~t--e~di~~L-~~l~~~~~~vDI--LLTh~wP~gi~~~~~~~~~~~~~~~~~~Gs~~i~~l~ 194 (550)
...... . ...|+ .+.+.++ .++. ...++|+ +|+|..-. .-.+++
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~D~iI~l~H~g~~-----------------------~~~~la 202 (264)
T cd07411 147 FPYVPIANPPRFTPGLTFGIREEELQEVVVKLR-REEGVDVVVLLSHNGLP-----------------------VDVELA 202 (264)
T ss_pred cCCcccccCcCCCCCcEECCHHHHHHHHHHHHH-HhCCCCEEEEEecCCch-----------------------hhHHHH
Confidence 432111 0 11222 1222222 2221 1234564 66665321 011233
Q ss_pred HHh-CCCEEEEccCCCccccccccCCCCcceeEEEEcCCCCCcccceeEEEeccCC
Q 008885 195 AEI-KPRYHIAGSKGVFYAREPYSNVDAVHVTRFLGLAPVGNKEKQKFIHALSPTP 249 (550)
Q Consensus 195 ~~l-kPRYhf~Gh~~~f~er~Py~~~~~~~~TRFI~La~~g~~~K~Kw~yAf~i~p 249 (550)
+++ ..-..+.||.|..+. .|+. ....|.++.-|..+. ++--++|+.
T Consensus 203 ~~~~~iDlilgGH~H~~~~-~~~~---~~~~t~v~~~g~~~~-----~vg~i~l~~ 249 (264)
T cd07411 203 ERVPGIDVILSGHTHERTP-KPII---AGGGTLVVEAGSHGK-----FLGRLDLDV 249 (264)
T ss_pred hcCCCCcEEEeCccccccc-Cccc---ccCCEEEEEcCcccc-----EEEEEEEEE
Confidence 332 345789999887554 2321 234688888887765 777777664
No 80
>PRK09968 serine/threonine-specific protein phosphatase 2; Provisional
Probab=97.61 E-value=0.00011 Score=72.39 Aligned_cols=71 Identities=18% Similarity=0.204 Sum_probs=48.7
Q ss_pred EEEEEcCCCCChHHHHHHHHHHhhhcCCCcEEEEecCCCCCChhhHHHHHHHhcccCCCCccEEEEecCCCChHHHHHHh
Q 008885 5 RILLCGDVLGRLNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSSELLDEFMNYVEGRSEIPIPTYFIGDYGVGAAKVLLAA 84 (550)
Q Consensus 5 KILv~GDvhG~~~~l~~kv~~l~~k~GpfD~li~~GDff~~~~~~~~~~~~~l~g~~~~p~ptyfv~GNhe~~~~~l~~l 84 (550)
||+|+||+||+++.+.+.++.+.-+ ...|.+||+||+..-+.... +..+++. + -.+++|.||||. .+++.+
T Consensus 16 ri~visDiHg~~~~l~~~l~~~~~~-~~~d~l~~lGD~vdrG~~~~-~~l~~l~---~--~~~~~v~GNHE~--~~~~~~ 86 (218)
T PRK09968 16 HIWVVGDIHGEYQLLQSRLHQLSFC-PETDLLISVGDNIDRGPESL-NVLRLLN---Q--PWFISVKGNHEA--MALDAF 86 (218)
T ss_pred eEEEEEeccCCHHHHHHHHHhcCCC-CCCCEEEECCCCcCCCcCHH-HHHHHHh---h--CCcEEEECchHH--HHHHHH
Confidence 8999999999999987777665322 24699999999976433322 3445542 2 246899999973 344433
No 81
>cd07412 MPP_YhcR_N Bacillus subtilis YhcR endonuclease and related proteins, N-terminal metallophosphatase domain. YhcR is a Bacillus subtilis sugar-nonspecific endonuclease. It cleaves endonucleolytically to yield nucleotide 3'-monophosphate products, similar to Staphylococcus aureus micrococcal nuclease. YhcR appears to be located in the cell wall, and is thought to be a substrate for a Bacillus subtilis sortase. YhcR is the major calcium-activated nuclease of B. subtilis. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated wi
Probab=97.59 E-value=0.012 Score=60.51 Aligned_cols=219 Identities=16% Similarity=0.141 Sum_probs=113.4
Q ss_pred CEEEEEcCCCCChHH--------------HHHHHHHHhhhcCCCcEEEEecCCCCCChh--hH---HHHHHHhcccCCCC
Q 008885 4 PRILLCGDVLGRLNQ--------------LFKRVQSVNKSAGPFDAVLCVGQFFPDSSE--LL---DEFMNYVEGRSEIP 64 (550)
Q Consensus 4 ~KILv~GDvhG~~~~--------------l~~kv~~l~~k~GpfD~li~~GDff~~~~~--~~---~~~~~~l~g~~~~p 64 (550)
++||.++|+||++.. +...++.+.+++ +-.++|-+||+|..... .. +...+.+ ..++
T Consensus 1 i~il~tnD~Hg~~~~~~~~~~~~~gG~arl~~~i~~~r~~~-~~~l~ld~GD~~~gs~~~s~~~~g~~~~~~~---n~~g 76 (288)
T cd07412 1 VQILAINDFHGRLEPPGKVVTVPAGGAAYLAAYLDEARAQN-PNSLFVSAGDLIGASPFESALLQDEPTIEAL---NAMG 76 (288)
T ss_pred CeEEEEeccccCccCCCCccccccccHHHHHHHHHHHHhcC-CCeEEEeCCcccccccchhhcccCCcHHHHH---HhhC
Confidence 479999999998542 444455554443 45699999998753211 00 0112222 3343
Q ss_pred ccEEEEecCCCChH---HHHHHhhcccc-------ccCc-ccCCceecCcEEEcC-------CCCeEEEcCeEEEEEeCc
Q 008885 65 IPTYFIGDYGVGAA---KVLLAASKNSA-------NQGF-KMDGFKVTDNLFWLK-------GSGNFTLHGLSVAYLSGR 126 (550)
Q Consensus 65 ~ptyfv~GNhe~~~---~~l~~l~~~~~-------~~~~-~~~g~ei~~Nl~~Lg-------~~gv~~i~GlrIa~lgG~ 126 (550)
+- +++.||||... .+.+.+..... -+.| ...-..++.|+++-. ..-+++++|+||+.+|=.
T Consensus 77 ~D-a~t~GNHefd~G~~~l~~~~~~~~~~~~~~~~~~~~~~a~fp~l~aNv~~~~~~~~~~~py~i~~~~G~kIgviGl~ 155 (288)
T cd07412 77 VD-ASAVGNHEFDEGYAELLRRINGGCHPTTGCQAGYPFPGANFPYLAANVYDKGTGTPALPPYTIKDVGGVKVGFIGAV 155 (288)
T ss_pred Ce-eeeecccccccCHHHHHHHHhccCCccccccccccCcCCCCCEEEEeEEecCCCCcccCCEEEEEECCEEEEEEeec
Confidence 43 57779999642 23333221000 0000 011236788887642 234557899999999875
Q ss_pred cCCCCC-------CCCCCCHHHHHHHHH----hhcCCCCccE--EEeCCCCccccccccccccccccCCCCCCcHHHHHH
Q 008885 127 QSSEGQ-------QFGTYSQDDVDALRA----LAEEPGIVDL--FLTNEWPSGVTNKAAASDMLVGISDSSNTDSTVSEL 193 (550)
Q Consensus 127 ~~~~~~-------~~~~~te~di~~L~~----l~~~~~~vDI--LLTh~wP~gi~~~~~~~~~~~~~~~~~~Gs~~i~~l 193 (550)
...... ....|+. .++++++ +.. .++|+ +|+|.--..-.. .. + .........++
T Consensus 156 ~~~~~~~~~~~~~~g~~f~d-~~e~~~~~v~~lr~--~~~D~IIvL~H~G~~~~~~--~~---~-----~~~~~~~~~~l 222 (288)
T cd07412 156 TKDTPNLVSPDGVAGLEFTD-EVEAINAVAPELKA--GGVDAIVVLAHEGGSTKGG--DD---T-----CSAASGPIADI 222 (288)
T ss_pred CCCccceeccccccCceEcC-HHHHHHHHHHHHHH--CCCCEEEEEeCCCCCCCCC--Cc---c-----ccccChhHHHH
Confidence 321100 0112321 2233332 221 35665 668843321110 00 0 00111234566
Q ss_pred HHHh--CCCEEEEccCCCccccccccCCCCcceeEEEEcCCCCCcccceeEEEeccCC
Q 008885 194 VAEI--KPRYHIAGSKGVFYAREPYSNVDAVHVTRFLGLAPVGNKEKQKFIHALSPTP 249 (550)
Q Consensus 194 ~~~l--kPRYhf~Gh~~~f~er~Py~~~~~~~~TRFI~La~~g~~~K~Kw~yAf~i~p 249 (550)
+.++ ..-..+.||.|..+.. |.. ....|.++..|..|+ ++-.+.|.-
T Consensus 223 ~~~~~~~iD~IlgGHsH~~~~~-~~~---~~~~~~v~q~g~~g~-----~vg~i~l~~ 271 (288)
T cd07412 223 VNRLDPDVDVVFAGHTHQAYNC-TVP---AGNPRLVTQAGSYGK-----AVADVDLTI 271 (288)
T ss_pred HhhcCCCCCEEEeCccCccccc-ccc---CcCCEEEEecChhhc-----eeEEEEEEE
Confidence 6665 4578999999887752 221 245688888888775 666666654
No 82
>COG1768 Predicted phosphohydrolase [General function prediction only]
Probab=97.59 E-value=0.0017 Score=61.15 Aligned_cols=149 Identities=19% Similarity=0.201 Sum_probs=91.1
Q ss_pred HhhhcCCCcEEEEecCCCCC--ChhhHHHHHHHhcccCCCCccEEEEecCCCChHHHHHHhhccccccCcccCCceecCc
Q 008885 26 VNKSAGPFDAVLCVGQFFPD--SSELLDEFMNYVEGRSEIPIPTYFIGDYGVGAAKVLLAASKNSANQGFKMDGFKVTDN 103 (550)
Q Consensus 26 l~~k~GpfD~li~~GDff~~--~~~~~~~~~~~l~g~~~~p~ptyfv~GNhe~~~~~l~~l~~~~~~~~~~~~g~ei~~N 103 (550)
+..+-.|=|.|++.||+--. -+++.++| .|+ ..+|-.-|.+-|||+--..-..++. .-+.+-
T Consensus 37 W~~~v~~eDiVllpGDiSWaM~l~ea~~Dl-~~i---~~LPG~K~m~rGNHDYWw~s~skl~------------n~lp~~ 100 (230)
T COG1768 37 WRSKVSPEDIVLLPGDISWAMRLEEAEEDL-RFI---GDLPGTKYMIRGNHDYWWSSISKLN------------NALPPI 100 (230)
T ss_pred HHhcCChhhEEEecccchhheechhhhhhh-hhh---hcCCCcEEEEecCCccccchHHHHH------------hhcCch
Confidence 33444467999999999321 12223333 344 5688889999999974322223332 124566
Q ss_pred EEEcCCCCeEEEcCeEEEEEeCccCCCCCCCCCCCHHHHHH-------HHH--hhcCCCCcc--EEEeCCCCcccccccc
Q 008885 104 LFWLKGSGNFTLHGLSVAYLSGRQSSEGQQFGTYSQDDVDA-------LRA--LAEEPGIVD--LFLTNEWPSGVTNKAA 172 (550)
Q Consensus 104 l~~Lg~~gv~~i~GlrIa~lgG~~~~~~~~~~~~te~di~~-------L~~--l~~~~~~vD--ILLTh~wP~gi~~~~~ 172 (550)
++||+. | +.+..+-|+|.-|-.++++. +..+|++|-+. |+- .+....+++ |+.||-||-.=.
T Consensus 101 l~~~n~-~-f~l~n~aI~G~RgW~s~~~~-~e~~te~Deki~~RE~~RLrlsa~a~l~k~~~~fivM~HYPP~s~~---- 173 (230)
T COG1768 101 LFYLNN-G-FELLNYAIVGVRGWDSPSFD-SEPLTEQDEKIFLREIGRLRLSADAALPKGVSKFIVMTHYPPFSDD---- 173 (230)
T ss_pred Hhhhcc-c-eeEeeEEEEEeecccCCCCC-cCccchhHHHHHHHHHHHHHHHHHHhcccCcCeEEEEEecCCCCCC----
Confidence 888874 4 35555777777776554432 34577776543 221 122334444 788999997421
Q ss_pred ccccccccCCCCCCcHHHHHHHHHhCCCEEEEccCCC
Q 008885 173 ASDMLVGISDSSNTDSTVSELVAEIKPRYHIAGSKGV 209 (550)
Q Consensus 173 ~~~~~~~~~~~~~Gs~~i~~l~~~lkPRYhf~Gh~~~ 209 (550)
..++ .+.+++++.|+-..+.||.|.
T Consensus 174 -----------~t~~-~~sevlee~rv~~~lyGHlHg 198 (230)
T COG1768 174 -----------GTPG-PFSEVLEEGRVSKCLYGHLHG 198 (230)
T ss_pred -----------CCCc-chHHHHhhcceeeEEeeeccC
Confidence 1112 477888999999999999763
No 83
>COG1409 Icc Predicted phosphohydrolases [General function prediction only]
Probab=97.58 E-value=0.0018 Score=65.58 Aligned_cols=73 Identities=16% Similarity=0.175 Sum_probs=47.8
Q ss_pred CEEEEEcCCCCC--hH---HHH-HHHHHHhhhcCCCcEEEEecCCCCCCh-hhHHHHHHHhcccCCCCccEEEEecCCCC
Q 008885 4 PRILLCGDVLGR--LN---QLF-KRVQSVNKSAGPFDAVLCVGQFFPDSS-ELLDEFMNYVEGRSEIPIPTYFIGDYGVG 76 (550)
Q Consensus 4 ~KILv~GDvhG~--~~---~l~-~kv~~l~~k~GpfD~li~~GDff~~~~-~~~~~~~~~l~g~~~~p~ptyfv~GNhe~ 76 (550)
|||+.++|+|-. .. .++ +.++.++ ..++|+||+.||+-.... .+-+.+.++|. ....+.|+++++||||.
T Consensus 1 ~~i~~isD~H~~~~~~~~~~~~~~~~~~i~--~~~~D~~v~tGDl~~~~~~~~~~~~~~~l~-~~~~~~~~~~vpGNHD~ 77 (301)
T COG1409 1 MRIAHISDLHLGALGVDSEELLEALLAAIE--QLKPDLLVVTGDLTNDGEPEEYRRLKELLA-RLELPAPVIVVPGNHDA 77 (301)
T ss_pred CeEEEEecCcccccccchHHHHHHHHHHHh--cCCCCEEEEccCcCCCCCHHHHHHHHHHHh-hccCCCceEeeCCCCcC
Confidence 689999999976 11 122 2223333 235699999999965422 22334556663 24788999999999986
Q ss_pred hHH
Q 008885 77 AAK 79 (550)
Q Consensus 77 ~~~ 79 (550)
...
T Consensus 78 ~~~ 80 (301)
T COG1409 78 RVV 80 (301)
T ss_pred Cch
Confidence 543
No 84
>cd07406 MPP_CG11883_N Drosophila melanogaster CG11883 and related proteins, N-terminal metallophosphatase domain. CG11883 is an uncharacterized Drosophila melanogaster UshA-like protein with two domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at th
Probab=97.58 E-value=0.01 Score=60.02 Aligned_cols=112 Identities=15% Similarity=0.072 Sum_probs=66.9
Q ss_pred CEEEEEcCCCC----------ChHHHHHHHHHHhhhcCCCcEEEEecCCCCCChh----hHHHHHHHhcccCCCCccEEE
Q 008885 4 PRILLCGDVLG----------RLNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSSE----LLDEFMNYVEGRSEIPIPTYF 69 (550)
Q Consensus 4 ~KILv~GDvhG----------~~~~l~~kv~~l~~k~GpfD~li~~GDff~~~~~----~~~~~~~~l~g~~~~p~ptyf 69 (550)
++||.+.|+|+ .+..+...++++.+.+ +-.++|.+||++..... .-+...+.+ ..++. .++
T Consensus 1 ~~il~~nd~~~~~~~~~~~~gG~~rl~~~i~~~r~~~-~~~l~l~~GD~~~g~~~~~~~~g~~~~~~l---~~l~~-d~~ 75 (257)
T cd07406 1 FTILHFNDVYEIAPLDGGPVGGAARFATLRKQLRKEN-PNTLVLFSGDVLSPSLLSTATKGKQMVPVL---NALGV-DLA 75 (257)
T ss_pred CeEEEEccceeecccCCCCcCCHHHHHHHHHHHHhcC-CCEEEEECCCccCCccchhhcCCccHHHHH---HhcCC-cEE
Confidence 47999999993 3566666666666544 43499999999754210 001222333 23333 477
Q ss_pred EecCCCChH--HHHHH-hhccccccCcccCCceecCcEEEcCC---------CCeEEEcCeEEEEEeCccC
Q 008885 70 IGDYGVGAA--KVLLA-ASKNSANQGFKMDGFKVTDNLFWLKG---------SGNFTLHGLSVAYLSGRQS 128 (550)
Q Consensus 70 v~GNhe~~~--~~l~~-l~~~~~~~~~~~~g~ei~~Nl~~Lg~---------~gv~~i~GlrIa~lgG~~~ 128 (550)
+.||||... +.+.. +.. .+...++.|+.+-.. ..+++.+|+||+.+|=..+
T Consensus 76 ~~GNHefd~g~~~l~~~~~~--------~~~~~L~aNi~~~~~~~~~~~~~~~~i~~~~g~kIgviG~~~~ 138 (257)
T cd07406 76 CFGNHEFDFGEDQLQKRLGE--------SKFPWLSSNVFDATGGGPLPNGKESAIIERAGVKIGLLGLVEE 138 (257)
T ss_pred eecccccccCHHHHHHHHhh--------CCCCEEEEEEEECCCCcccCCCCCeEEEEECCeEEEEEEEecc
Confidence 899999642 22222 221 123467888876432 3455679999999986543
No 85
>cd07413 MPP_PA3087 Pseudomonas aeruginosa PA3087 and related proteins, metallophosphatase domain. PA3087 is an uncharacterized protein from Pseudomonas aeruginosa with a metallophosphatase domain that belongs to the phosphoprotein phosphatase (PPP) family. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of
Probab=97.54 E-value=0.00018 Score=71.20 Aligned_cols=68 Identities=15% Similarity=0.209 Sum_probs=45.9
Q ss_pred EEEcCCCCChHHHHHHHHHHhhhc------CCCcEEEEecCCCCCChhhHHHHHHHhcccCCCCccEEEEecCCCC
Q 008885 7 LLCGDVLGRLNQLFKRVQSVNKSA------GPFDAVLCVGQFFPDSSELLDEFMNYVEGRSEIPIPTYFIGDYGVG 76 (550)
Q Consensus 7 Lv~GDvhG~~~~l~~kv~~l~~k~------GpfD~li~~GDff~~~~~~~~~~~~~l~g~~~~p~ptyfv~GNhe~ 76 (550)
.|+||+||+++.|.+.++.+.... .+.|.+|++||+..-.+. ..+..+++..... +-.+++|-||||.
T Consensus 2 ~vIGDIHG~~~~L~~lL~~i~~~~~~~~~~~~~d~lvflGD~IDRGp~-S~~vl~~l~~l~~-~~~~~~l~GNHE~ 75 (222)
T cd07413 2 DFIGDIHGHAEKLVVLLHKLGYQELSGVYRHPERQVVFLGDLIDRGPE-IRELLEIVKSMVD-AGHALAVMGNHEF 75 (222)
T ss_pred EEEEeccCCHHHHHHHHHHcCCCccccccCCCCCEEEEeCcccCCCCC-HHHHHHHHHHhhc-CCCEEEEEccCcH
Confidence 589999999999888888775431 246899999999643322 2233444422121 2368999999984
No 86
>cd00144 MPP_PPP_family phosphoprotein phosphatases of the metallophosphatase superfamily, metallophosphatase domain. The PPP (phosphoprotein phosphatase) family is one of two known protein phosphatase families specific for serine and threonine. This family includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate
Probab=97.54 E-value=0.00016 Score=71.05 Aligned_cols=67 Identities=13% Similarity=0.346 Sum_probs=45.0
Q ss_pred EEEcCCCCChHHHHHHHHHHhhhcCCCcEEEEecCCCCCChhhHHHHHHHhcccCCCCccEEEEecCCCC
Q 008885 7 LLCGDVLGRLNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSSELLDEFMNYVEGRSEIPIPTYFIGDYGVG 76 (550)
Q Consensus 7 Lv~GDvhG~~~~l~~kv~~l~~k~GpfD~li~~GDff~~~~~~~~~~~~~l~g~~~~p~ptyfv~GNhe~ 76 (550)
+|+||+||+++.+.+.++.+.. .+.|.+|++||++.......+ ...++......+.+++++.||||.
T Consensus 1 ~~igDiHg~~~~l~~~l~~~~~--~~~d~li~lGD~vdrg~~~~~-~l~~l~~~~~~~~~~~~l~GNHe~ 67 (225)
T cd00144 1 YVIGDIHGCLDDLLRLLEKIGF--PPNDKLIFLGDYVDRGPDSVE-VIDLLLALKILPDNVILLRGNHED 67 (225)
T ss_pred CEEeCCCCCHHHHHHHHHHhCC--CCCCEEEEECCEeCCCCCcHH-HHHHHHHhcCCCCcEEEEccCchh
Confidence 4899999999988766666543 246999999999754332222 222322112126789999999985
No 87
>cd07425 MPP_Shelphs Shewanella-like phosphatases, metallophosphatase domain. This family includes bacterial, eukaryotic, and archeal proteins orthologous to the Shewanella cold-active protein-tyrosine phosphatase, CAPTPase. CAPTPase is an uncharacterized protein that belongs to the Shelph (Shewanella-like phosphatase) family of PPP (phosphoprotein phosphatases). The PPP family is one of two known protein phosphatase families specific for serine and threonine. In addition to Shelps, the PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metal
Probab=97.49 E-value=0.0002 Score=70.10 Aligned_cols=69 Identities=13% Similarity=0.177 Sum_probs=46.0
Q ss_pred EEEcCCCCChHHHHHHHHHHhh------hcCCCcEEEEecCCCCCChhhHHHHHHHhcc----cCCCCccEEEEecCCCC
Q 008885 7 LLCGDVLGRLNQLFKRVQSVNK------SAGPFDAVLCVGQFFPDSSELLDEFMNYVEG----RSEIPIPTYFIGDYGVG 76 (550)
Q Consensus 7 Lv~GDvhG~~~~l~~kv~~l~~------k~GpfD~li~~GDff~~~~~~~~~~~~~l~g----~~~~p~ptyfv~GNhe~ 76 (550)
+|+||+||+++.+.+.++.+.- -..+.|.++++||++.-.+... ++.+++.. ..+.+.+++++.||||.
T Consensus 1 ~vi~DIHG~~~~l~~ll~~~~~~~~~~~~~~~~d~lv~lGD~vdrG~~~~-~vl~~l~~l~~~~~~~~~~v~~l~GNHE~ 79 (208)
T cd07425 1 VAIGDLHGDLDAFREILKGAGVIDSNDHWIGGSTHLVQLGDIFDRGPDVI-EILWLLYKLEQEAAKAGGKVHFLLGNHEL 79 (208)
T ss_pred CEEeCccCCHHHHHHHHHHCCCCCccccccCCCcEEEEECCCcCCCcCHH-HHHHHHHHHHHHHHhcCCeEEEeeCCCcH
Confidence 4899999999998777765531 0135799999999976433322 22232211 12346789999999984
No 88
>cd07408 MPP_SA0022_N Staphylococcus aureus SA0022 and related proteins, N-terminal metallophosphatase domain. SA0022 is an uncharacterized Staphylococcus aureus UshA-like protein with two putative domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. SA0022 also contains a putative C-terminal cell wall anchor domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet
Probab=97.33 E-value=0.0056 Score=61.82 Aligned_cols=111 Identities=16% Similarity=0.075 Sum_probs=65.1
Q ss_pred CEEEEEcCCCCChH----------HHHHHHHHHhhhcCCCcEEEEecCCCCCChhh----HHHHHHHhcccCCCCccEEE
Q 008885 4 PRILLCGDVLGRLN----------QLFKRVQSVNKSAGPFDAVLCVGQFFPDSSEL----LDEFMNYVEGRSEIPIPTYF 69 (550)
Q Consensus 4 ~KILv~GDvhG~~~----------~l~~kv~~l~~k~GpfD~li~~GDff~~~~~~----~~~~~~~l~g~~~~p~ptyf 69 (550)
++||.++|+||.+. ++...++++.++ +-+++|-+||++...... ...+.+.+ ..+.+. ++
T Consensus 1 i~il~~~D~H~~~~~~~~~~~g~~~l~~~i~~~~~~--~~~l~l~~GD~~~gs~~~~~~~g~~~~~~l---n~~g~d-~~ 74 (257)
T cd07408 1 ITILHTNDIHGRIDEDDNNGIGYAKLATYKKEMNKL--DNDLLVDAGDAIQGLPISDLDKGETIIKIM---NAVGYD-AV 74 (257)
T ss_pred CEEEEeccCcccccCCCCccccHHHHHHHHHHHHhc--CCEEEEeCCCcCCCchhhhhcCCcHHHHHH---HhcCCc-EE
Confidence 47999999999753 344445554443 568999999997642110 01122232 334344 46
Q ss_pred EecCCCChHH--HHHHhhccccccCcccCCceecCcEEEcC-------CCCeEEEc-CeEEEEEeCcc
Q 008885 70 IGDYGVGAAK--VLLAASKNSANQGFKMDGFKVTDNLFWLK-------GSGNFTLH-GLSVAYLSGRQ 127 (550)
Q Consensus 70 v~GNhe~~~~--~l~~l~~~~~~~~~~~~g~ei~~Nl~~Lg-------~~gv~~i~-GlrIa~lgG~~ 127 (550)
+.||||.... .+..+-.. .+-..++.|+.... ..-+++.+ |+||+.+|-..
T Consensus 75 ~~GNHefd~G~~~l~~~~~~-------~~~~~l~aNv~~~~~~~~~~~py~i~~~~~G~kIgviG~~~ 135 (257)
T cd07408 75 TPGNHEFDYGLDRLKELSKE-------ADFPFLSANVYDNDTGKRVFKPYKIKELGNGVKVGVIGLTT 135 (257)
T ss_pred ccccccccCCHHHHHHHHhh-------CCCCEEEEEEEEcCCCCcccCCEEEEEcCCCCEEEEEeecC
Confidence 7799996522 22221110 12346788887653 12344677 99999999653
No 89
>PRK09419 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=97.32 E-value=0.011 Score=71.94 Aligned_cols=204 Identities=15% Similarity=0.104 Sum_probs=104.8
Q ss_pred CCEEEEEcCCCCCh---HHHHHHHHHHhhhcCCCcEEEE-ecCCCCCChhh----HHHHHHHhcccCCCCccEEEEecCC
Q 008885 3 PPRILLCGDVLGRL---NQLFKRVQSVNKSAGPFDAVLC-VGQFFPDSSEL----LDEFMNYVEGRSEIPIPTYFIGDYG 74 (550)
Q Consensus 3 ~~KILv~GDvhG~~---~~l~~kv~~l~~k~GpfD~li~-~GDff~~~~~~----~~~~~~~l~g~~~~p~ptyfv~GNh 74 (550)
.++||.++|+||.+ .++...++++.+++ .|+|++ +||+|...... -....+.+ ..+.+ -+++.|||
T Consensus 660 ~l~Il~~nD~Hg~l~g~~r~~~~i~~~r~~~--~~~l~ld~GD~~~gs~~~~~~~g~~~~~~l---n~lg~-d~~~~GNH 733 (1163)
T PRK09419 660 ELTILHTNDFHGHLDGAAKRVTKIKEVKEEN--PNTILVDAGDVYQGSLYSNLLKGLPVLKMM---KEMGY-DASTFGNH 733 (1163)
T ss_pred EEEEEEEeecccCCCCHHHHHHHHHHHHhhC--CCeEEEecCCCCCCcchhhhcCChHHHHHH---hCcCC-CEEEeccc
Confidence 37899999999874 45555566555444 377766 99997542110 01122333 22322 36699999
Q ss_pred CChH---HHHHHhhccc---cccCcc-cCCceecCcEEEcC---------CCCeEEEcCeEEEEEeCccCC-C-----CC
Q 008885 75 VGAA---KVLLAASKNS---ANQGFK-MDGFKVTDNLFWLK---------GSGNFTLHGLSVAYLSGRQSS-E-----GQ 132 (550)
Q Consensus 75 e~~~---~~l~~l~~~~---~~~~~~-~~g~ei~~Nl~~Lg---------~~gv~~i~GlrIa~lgG~~~~-~-----~~ 132 (550)
|... .+.+.+.... ....+. .+-..++.|+++-. ..-|++++|+||+.+|=.... . ..
T Consensus 734 Efd~g~~~l~~~l~~~~~~~~~~~~~~~~fp~l~aNv~~~~~~~~~~~~~py~I~e~~G~kIgiiGltt~~~~~~~~p~~ 813 (1163)
T PRK09419 734 EFDWGPDVLPDWLKGGGDPKNRHQFEKPDFPFVASNIYVKKTGKLVSWAKPYILVEVNGKKVGFIGLTTPETAYKTSPGN 813 (1163)
T ss_pred ccccChHHHHHHHHhcccccccccccCCCCCEEEEEEEeCCCCccccccCCEEEEEECCEEEEEEEecccccccccCCCC
Confidence 9542 2333332110 000000 01246788887532 234456899999999875321 1 10
Q ss_pred -CCCCCCHHHHHHHHHhh---cCCCCcc--EEEeCCCCccccccccccccccccCCCCCCcHHHHHHHHHh-CCCEEEEc
Q 008885 133 -QFGTYSQDDVDALRALA---EEPGIVD--LFLTNEWPSGVTNKAAASDMLVGISDSSNTDSTVSELVAEI-KPRYHIAG 205 (550)
Q Consensus 133 -~~~~~te~di~~L~~l~---~~~~~vD--ILLTh~wP~gi~~~~~~~~~~~~~~~~~~Gs~~i~~l~~~l-kPRYhf~G 205 (550)
....|++ .++++++.. +...++| |+|||.--.. +. ..+.-.+.+|++++ .--..+.|
T Consensus 814 ~~~l~f~d-~~e~~~~~v~~Lr~~~~~D~VV~LsH~G~~~-----d~----------~~~~~~~~~lA~~v~gIDvIigG 877 (1163)
T PRK09419 814 VKNLEFKD-PAEAAKKWVKELKEKEKVDAIIALTHLGSNQ-----DR----------TTGEITGLELAKKVKGVDAIISA 877 (1163)
T ss_pred cCCcEEcC-HHHHHHHHHHHHHhhcCCCEEEEEecCCccc-----cc----------cccccHHHHHHHhCCCCCEEEeC
Confidence 0123332 233333221 1124566 5888874321 10 01122345666655 35588899
Q ss_pred cCCCccccccccCCCCcceeEEEEcCCCCC
Q 008885 206 SKGVFYAREPYSNVDAVHVTRFLGLAPVGN 235 (550)
Q Consensus 206 h~~~f~er~Py~~~~~~~~TRFI~La~~g~ 235 (550)
|.|..+... ...|-.+..+.+|.
T Consensus 878 HsH~~~~~~-------v~~~~ivqag~~g~ 900 (1163)
T PRK09419 878 HTHTLVDKV-------VNGTPVVQAYKYGR 900 (1163)
T ss_pred CCCcccccc-------CCCEEEEeCChhHc
Confidence 998876521 23455665555553
No 90
>cd07405 MPP_UshA_N Escherichia coli UshA and related proteins, N-terminal metallophosphatase domain. UshA is a bacterial periplasmic enzyme with UDP-sugar hydrolase and dinucleoside-polyphosphate hydrolase activities associated with its N-terminal metallophosphatase domain, and 5'-nucleotidase activity associated with its C-terminal domain. UshA has been studied in Escherichia coli where it is expressed from the ushA gene as an immature precursor and proteolytically cleaved to form a mature product upon export to the periplasm. UshA hydrolyzes many different nucleotides and nucleotide derivitives and has been shown to degrade external UDP-glucose to uridine, glucose 1-phosphate and phosphate for utilization by the cell. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs
Probab=97.29 E-value=0.034 Score=57.12 Aligned_cols=112 Identities=18% Similarity=0.110 Sum_probs=62.6
Q ss_pred CEEEEEcCCCCChHH----------HHHHHHHHhhh---cCCCcEEEEecCCCCCChh-----hHHHHHHHhcccCCCCc
Q 008885 4 PRILLCGDVLGRLNQ----------LFKRVQSVNKS---AGPFDAVLCVGQFFPDSSE-----LLDEFMNYVEGRSEIPI 65 (550)
Q Consensus 4 ~KILv~GDvhG~~~~----------l~~kv~~l~~k---~GpfD~li~~GDff~~~~~-----~~~~~~~~l~g~~~~p~ 65 (550)
+.||.++|+||++.. +...++.+.++ .++--+++-+||++..... ....+ +.+ ..+.+
T Consensus 1 ltIl~tnD~Hg~l~~~~~~~gG~ar~a~~i~~~r~~~~~~~~~~l~ld~GD~~~Gs~~~~~~~g~~~~-~~~---n~~g~ 76 (285)
T cd07405 1 ITILHTNDHHGHFWPNGTGEYGLAAQKTLVDGVRREVAAQGGYVLLLSGGDINTGVPESDLQDAEPDF-RGM---NLVGY 76 (285)
T ss_pred CEEEEEcccccccccCCCCCccHHHHHHHHHHHHHHhhccCCCEEEEeCCCcCCCchhHHhcCcchHH-HHH---HhhCC
Confidence 479999999998533 33334433322 2455799999999743211 00011 122 23334
Q ss_pred cEEEEecCCCChHH--HHHHhhccccccCcccCCceecCcEEEcC------CCCeEEEcCeEEEEEeCcc
Q 008885 66 PTYFIGDYGVGAAK--VLLAASKNSANQGFKMDGFKVTDNLFWLK------GSGNFTLHGLSVAYLSGRQ 127 (550)
Q Consensus 66 ptyfv~GNhe~~~~--~l~~l~~~~~~~~~~~~g~ei~~Nl~~Lg------~~gv~~i~GlrIa~lgG~~ 127 (550)
- +.+.||||.... .+..+... ..-..++.|+++-. ..-+++++|+||+.+|=..
T Consensus 77 D-a~~~GNHEfD~G~~~L~~~~~~-------~~fp~l~aNv~~~~g~~~~~p~~i~~~~G~kIgviG~t~ 138 (285)
T cd07405 77 D-AMAVGNHEFDNPLEVLRQQMKW-------ANFPLLSANIYQESGERLFKPYALFDLGGLKIAVIGLTT 138 (285)
T ss_pred c-EEeecccccccCHHHHHHHHhh-------CCCCEEEEEEEecCCCCccCCeEEEEECCEEEEEEEecc
Confidence 3 445599997632 23222111 11236788887642 1234467999999998754
No 91
>TIGR01530 nadN NAD pyrophosphatase/5'-nucleotidase NadN. This model describes NadN of Haemophilus influenzae and a small number of close homologs in pathogenic, Gram-negative bacteria. NadN is a periplasmic enzyme that cleaves NAD (nicotinamide adenine dinucleotide) to NMN (nicotinamide mononucleotide) and AMP. The NMN must be converted by a 5'-nucleotidase to nicotinamide riboside for import. NadN belongs a large family of 5'-nucleotidases and has NMN 5'-nucleotidase activity for NMN, AMP, etc.
Probab=97.21 E-value=0.011 Score=66.45 Aligned_cols=36 Identities=8% Similarity=0.074 Sum_probs=29.2
Q ss_pred ecCCCCCCCeEE-EEeccccCCCCCCCHHHHHHHHHH
Q 008885 416 LPKGPLVEDHVL-VIPVEHVPNTISTSPECEKELGRF 451 (550)
Q Consensus 416 l~kgpl~~gH~l-IiP~~H~~s~~~l~~~~~~Ei~~~ 451 (550)
+++|+++-+.++ |.|..=.-.+.+++-....++.+.
T Consensus 409 i~~G~IT~~di~~v~PF~N~l~v~~ltG~~Lk~~LE~ 445 (550)
T TIGR01530 409 ILPGEITFNDAYTFLPFGNTLVLVDMEGAELKQIIED 445 (550)
T ss_pred CCCCCcCHHHhheeCCcCceEEEEEecHHHHHHHHHH
Confidence 567899988877 889888888888888877777764
No 92
>cd07398 MPP_YbbF-LpxH Escherichia coli YbbF/LpxH and related proteins, metallophosphatase domain. YbbF/LpxH is an Escherichia coli UDP-2,3-diacylglucosamine hydrolase thought to catalyze the fourth step of lipid A biosynthesis, in which a precursor UDP-2,3-diacylglucosamine is hydrolyzed to yield 2,3-diacylglucosamine 1-phosphate and UMP. YbbF belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues l
Probab=97.20 E-value=0.0015 Score=63.64 Aligned_cols=42 Identities=14% Similarity=0.062 Sum_probs=30.8
Q ss_pred CCcHHHHHHHHHhCCCEEEEccCCCccccccccCCCCcceeEEEEcCCC
Q 008885 185 NTDSTVSELVAEIKPRYHIAGSKGVFYAREPYSNVDAVHVTRFLGLAPV 233 (550)
Q Consensus 185 ~Gs~~i~~l~~~lkPRYhf~Gh~~~f~er~Py~~~~~~~~TRFI~La~~ 233 (550)
.....+.+++...++++.++||.|...... ...+.++|+|.+
T Consensus 176 ~~~~~~~~~~~~~~~~~~i~GH~H~~~~~~-------~~~~~~~n~G~W 217 (217)
T cd07398 176 VFEEAVARLARRKGVDGVICGHTHRPALHE-------LDGKLYINLGDW 217 (217)
T ss_pred HHHHHHHHHHHhcCCCEEEECCCCCCCeEE-------ECCEEEEECCCC
Confidence 455567788889999999999988655432 225788888863
No 93
>cd08166 MPP_Cdc1_like_1 uncharacterized subgroup related to Saccharomyces cerevisiae CDC1, metallophosphatase domain. A functionally uncharacterized subgroup related to the metallophosphatase domain of Saccharomyces cerevisiae Cdc1, S. cerevisiae Ted1 and human MPPE1. Cdc1 is an endoplasmic reticulum-localized transmembrane lipid phosphatase and is a subunit of DNA polymerase delta. TED1 (trafficking of Emp24p/Erv25p-dependent cargo disrupted 1), acts together with Emp24p and Erv25p in cargo exit from the ER. The MPPE1 gene is a candidate susceptibility gene for Bipolar disorder. Proteins in this uncharacterized subgroup belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like R
Probab=97.18 E-value=0.0038 Score=60.40 Aligned_cols=35 Identities=9% Similarity=0.187 Sum_probs=29.0
Q ss_pred EEEeCCCCccccccccccccccccCCCCCCcHHHHHHHHHhCCCEEEEccCCC
Q 008885 157 LFLTNEWPSGVTNKAAASDMLVGISDSSNTDSTVSELVAEIKPRYHIAGSKGV 209 (550)
Q Consensus 157 ILLTh~wP~gi~~~~~~~~~~~~~~~~~~Gs~~i~~l~~~lkPRYhf~Gh~~~ 209 (550)
|+|||.|+... +.+.+.+++.+++|...|+||.|.
T Consensus 112 i~lsH~P~~~~------------------~~~~~~~~~~~~~p~~Ifs~H~H~ 146 (195)
T cd08166 112 IMLSHVPLLAE------------------GGQALKHVVTDLDPDLIFSAHRHK 146 (195)
T ss_pred eeeeccccccc------------------ccHHHHHHHHhcCceEEEEcCccc
Confidence 99999988642 233888999999999999999775
No 94
>cd07409 MPP_CD73_N CD73 ecto-5'-nucleotidase and related proteins, N-terminal metallophosphatase domain. CD73 is a mammalian ecto-5'-nucleotidase expressed in endothelial cells and lymphocytes that catalyzes the conversion of 5'-AMP to adenosine in the final step of a pathway that generates adenosine from ATP. This pathway also includes a CD39 nucleoside triphosphate dephosphorylase that mediates the dephosphorylation of ATP to ADP and then to 5'-AMP. These enzymes all have an N-terminal metallophosphatase domain and a C-terminal 5'nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active si
Probab=97.17 E-value=0.031 Score=57.22 Aligned_cols=111 Identities=12% Similarity=0.010 Sum_probs=62.8
Q ss_pred CEEEEEcCCCCCh---------------------HHHHHHHHHHhhhcCCCcEEEEecCCCCCChh----hHHHHHHHhc
Q 008885 4 PRILLCGDVLGRL---------------------NQLFKRVQSVNKSAGPFDAVLCVGQFFPDSSE----LLDEFMNYVE 58 (550)
Q Consensus 4 ~KILv~GDvhG~~---------------------~~l~~kv~~l~~k~GpfD~li~~GDff~~~~~----~~~~~~~~l~ 58 (550)
++||.++|+||++ .++...++++.++. +--+++-+||++..... .-+...+.+
T Consensus 1 l~il~tnD~Hg~l~~~~~~~~~~~~~~~~~~gG~ar~~~~v~~~r~~~-~~~l~ld~GD~~~gs~~~~~~~g~~~~~~l- 78 (281)
T cd07409 1 LTILHTNDHHSRFEETNPSGGVKDAATEKCYGGFARVATLVKELRAEN-PNVLFLNAGDAFQGTLWYTLYKGNADAEFM- 78 (281)
T ss_pred CEEEEeccccccccccCccccccccccccccCCHHHHHHHHHHHHhcC-CCEEEEeCCCCCCCcchhhhcCChHHHHHH-
Confidence 4799999999875 44555555555443 33356669998753210 011122333
Q ss_pred ccCCCCccEEEEecCCCChHH---HHHHhhccccccCcccCCceecCcEEEcC----------CCCeEEEcCeEEEEEeC
Q 008885 59 GRSEIPIPTYFIGDYGVGAAK---VLLAASKNSANQGFKMDGFKVTDNLFWLK----------GSGNFTLHGLSVAYLSG 125 (550)
Q Consensus 59 g~~~~p~ptyfv~GNhe~~~~---~l~~l~~~~~~~~~~~~g~ei~~Nl~~Lg----------~~gv~~i~GlrIa~lgG 125 (550)
..+.+. +++.||||.... +.+.+.. .....++.|+..-. ...+++.+|+||+.+|=
T Consensus 79 --n~~g~D-~~~lGNHefd~G~~~l~~~~~~--------~~~p~l~aNv~~~~~~~~~~~~~~p~~i~~~~G~kIgviG~ 147 (281)
T cd07409 79 --NLLGYD-AMTLGNHEFDDGVEGLAPFLNN--------LKFPVLSANIDTSNEPPLLDGLLKPSTILTVGGEKIGIIGY 147 (281)
T ss_pred --HhcCCC-EEEeccccccCCHHHHHHHHHh--------CCCCEEEEeeecCCCccccccccCCeEEEEECCEEEEEEEE
Confidence 345555 445689997632 2222221 12335777776433 12455789999999986
Q ss_pred cc
Q 008885 126 RQ 127 (550)
Q Consensus 126 ~~ 127 (550)
..
T Consensus 148 ~~ 149 (281)
T cd07409 148 TT 149 (281)
T ss_pred ec
Confidence 53
No 95
>PTZ00422 glideosome-associated protein 50; Provisional
Probab=97.04 E-value=0.037 Score=59.11 Aligned_cols=213 Identities=12% Similarity=0.040 Sum_probs=107.8
Q ss_pred CCEEEEEcCCCCCh---HHHHHHHHHHhhhcCCCcEEEEecCCCCC------ChhhHHHHHHHhcccC-CCCccEEEEec
Q 008885 3 PPRILLCGDVLGRL---NQLFKRVQSVNKSAGPFDAVLCVGQFFPD------SSELLDEFMNYVEGRS-EIPIPTYFIGD 72 (550)
Q Consensus 3 ~~KILv~GDvhG~~---~~l~~kv~~l~~k~GpfD~li~~GDff~~------~~~~~~~~~~~l~g~~-~~p~ptyfv~G 72 (550)
+++++++||.-+.- ..+-+.+.++.++. ++|+||-+||-|.. ++.-...|++.++... .+.+|-|.|.|
T Consensus 26 ~l~F~~vGDwG~g~~~Q~~VA~~M~~~~~~~-~~~FVls~GDNF~~Gv~sv~Dp~f~~~FE~vY~~~s~~L~~Pwy~vLG 104 (394)
T PTZ00422 26 QLRFASLGNWGTGSKQQKLVASYLKQYAKNE-RVTFLVSPGSNFPGGVDGLNDPKWKHCFENVYSEESGDMQIPFFTVLG 104 (394)
T ss_pred eEEEEEEecCCCCchhHHHHHHHHHHHHHhC-CCCEEEECCccccCCCCCccchhHHhhHhhhccCcchhhCCCeEEeCC
Confidence 46899999965421 12223344444444 79999999998732 1222334666665432 26789999999
Q ss_pred CCCChHHHHHHhhccc-------------cccCcccCCceecCcEEEcCCCCeEE--------E--cC--eEEEEEeCcc
Q 008885 73 YGVGAAKVLLAASKNS-------------ANQGFKMDGFKVTDNLFWLKGSGNFT--------L--HG--LSVAYLSGRQ 127 (550)
Q Consensus 73 Nhe~~~~~l~~l~~~~-------------~~~~~~~~g~ei~~Nl~~Lg~~gv~~--------i--~G--lrIa~lgG~~ 127 (550)
|||=.-+...++.... ....-.....|..||-+|--...... . .+ +.|.++--..
T Consensus 105 NHDy~Gn~~AQi~r~~~~y~~~~~~~~~~y~~~~~~~~RW~mP~~yY~~~~~f~~~~~~~~~~~~~~~~~v~fifiDT~~ 184 (394)
T PTZ00422 105 QADWDGNYNAELLKGQNVYLNGHGQTDIEYDSNNDIYPKWIMPNYWYHYFTHFTDTSGPSLLKSGHKDMSVAFIFIDTWI 184 (394)
T ss_pred cccccCCchhhhccccccccccccccccccccccccCCCccCCchhheeeeeeecccccccccccCCCCEEEEEEEECch
Confidence 9974222333321000 00000012457778865521001000 0 11 2223332110
Q ss_pred CC-CCCCCCCCCHHHHHHHHH-h--hcCCCCccEEEeCCCCccccccccccccccccCCCCCCcHHHHHHHHHhCCCEEE
Q 008885 128 SS-EGQQFGTYSQDDVDALRA-L--AEEPGIVDLFLTNEWPSGVTNKAAASDMLVGISDSSNTDSTVSELVAEIKPRYHI 203 (550)
Q Consensus 128 ~~-~~~~~~~~te~di~~L~~-l--~~~~~~vDILLTh~wP~gi~~~~~~~~~~~~~~~~~~Gs~~i~~l~~~lkPRYhf 203 (550)
.. ... ....++.+.+-|.+ | +....+-=|++-|-|-.......+. ..-...+..|+++.+-.+.+
T Consensus 185 l~~~~~-~~~~~~~~w~~L~~~L~~a~k~a~WkIVvGHhPIySsG~hg~~----------~~L~~~L~PLL~ky~VdlYi 253 (394)
T PTZ00422 185 LSSSFP-YKKVSERAWQDLKATLEYAPKIADYIIVVGDKPIYSSGSSKGD----------SYLSYYLLPLLKDAQVDLYI 253 (394)
T ss_pred hcccCC-ccccCHHHHHHHHHHHHhhccCCCeEEEEecCceeecCCCCCC----------HHHHHHHHHHHHHcCcCEEE
Confidence 00 000 00123444443443 2 1112334578889888876432110 01123677888999999999
Q ss_pred EccCCCccccccccCCCCcceeEEEEcCCCC
Q 008885 204 AGSKGVFYAREPYSNVDAVHVTRFLGLAPVG 234 (550)
Q Consensus 204 ~Gh~~~f~er~Py~~~~~~~~TRFI~La~~g 234 (550)
+||.|. +|+.. ...|.||.-|.-+
T Consensus 254 sGHDH~-lq~i~------~~gt~yIvSGaGs 277 (394)
T PTZ00422 254 SGYDRN-MEVLT------DEGTAHINCGSGG 277 (394)
T ss_pred Eccccc-eEEec------CCCceEEEeCccc
Confidence 999874 45431 2357888777643
No 96
>cd07420 MPP_RdgC Drosophila melanogaster RdgC and related proteins, metallophosphatase domain. RdgC (retinal degeneration C) is a vertebrate serine-threonine protein phosphatase that is required to prevent light-induced retinal degeneration. In addition to its catalytic domain, RdgC has two C-terminal EF hands. Homologs of RdgC include the human phosphatases protein phosphatase with EF hands 1 and -2 (PPEF-1 and -2). PPEF-1 transcripts are present at low levels in the retina, PPEF-2 transcripts and PPEF-2 protein are present at high levels in photoreceptors. The PPP (phosphoprotein phosphatase) family, to which RdgC belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all
Probab=96.93 E-value=0.0016 Score=67.80 Aligned_cols=73 Identities=15% Similarity=0.230 Sum_probs=48.0
Q ss_pred CEEEEEcCCCCChHHHHHHHHHHhhhcCCCcEEEEecCCCCCChhhHHHHHHHhcccCCCCccEEEEecCCCCh
Q 008885 4 PRILLCGDVLGRLNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSSELLDEFMNYVEGRSEIPIPTYFIGDYGVGA 77 (550)
Q Consensus 4 ~KILv~GDvhG~~~~l~~kv~~l~~k~GpfD~li~~GDff~~~~~~~~~~~~~l~g~~~~p~ptyfv~GNhe~~ 77 (550)
.++.|+||+||++..|...++...... +-+.+|.+||+..-+....+.+.-++.-+...|--++.+-||||..
T Consensus 51 ~~~~vvGDiHG~~~dL~~il~~~g~~~-~~~~~lFLGDyVDRG~~s~Evl~ll~~lk~~~p~~v~llRGNHE~~ 123 (321)
T cd07420 51 KQVTICGDLHGKLDDLFLIFYKNGLPS-PENPYVFNGDFVDRGKRSIEILIILFAFFLVYPNEVHLNRGNHEDH 123 (321)
T ss_pred CCeEEEEeCCCCHHHHHHHHHHcCCCC-ccceEEEeccccCCCCCcHHHHHHHHHHhhcCCCcEEEecCchhhh
Confidence 379999999999999876665432110 2367999999976544434434333322234455689999999964
No 97
>smart00156 PP2Ac Protein phosphatase 2A homologues, catalytic domain. Large family of serine/threonine phosphatases, that includes PP1, PP2A and PP2B (calcineurin) family members.
Probab=96.92 E-value=0.0021 Score=65.57 Aligned_cols=72 Identities=11% Similarity=0.246 Sum_probs=48.7
Q ss_pred CEEEEEcCCCCChHHHHHHHHHHhhhcCCCcEEEEecCCCCCChhhHHHHHHHhcccCCCCccEEEEecCCCCh
Q 008885 4 PRILLCGDVLGRLNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSSELLDEFMNYVEGRSEIPIPTYFIGDYGVGA 77 (550)
Q Consensus 4 ~KILv~GDvhG~~~~l~~kv~~l~~k~GpfD~li~~GDff~~~~~~~~~~~~~l~g~~~~p~ptyfv~GNhe~~ 77 (550)
++|.|+||+||++..+...++.+. ..+-|-++++||+..-+....+.+.-++.-+...|--++.+-||||..
T Consensus 28 ~~i~vvGDiHG~~~~l~~ll~~~~--~~~~~~~vfLGD~VDrG~~s~e~l~~l~~lk~~~p~~v~llrGNHE~~ 99 (271)
T smart00156 28 APVTVCGDIHGQFDDLLRLFDLNG--PPPDTNYVFLGDYVDRGPFSIEVILLLFALKILYPNRVVLLRGNHESR 99 (271)
T ss_pred CCEEEEEeCcCCHHHHHHHHHHcC--CCCCceEEEeCCccCCCCChHHHHHHHHHHHhcCCCCEEEEeccccHH
Confidence 689999999999999876665432 224689999999976443333333322211234566689999999963
No 98
>TIGR00024 SbcD_rel_arch putative phosphoesterase, SbcD/Mre11-related. Members of this uncharacterized family share a motif approximating DXH(X25)GDXXD(X25)GNHD as found in several phosphoesterases, including the nucleases SbcD and Mre11. SbcD is a subunit of the SbcCD nuclease of E. coli that can cleave DNA hairpins to unblock stalled DNA replication. All members of this family are archaeal.
Probab=96.91 E-value=0.0022 Score=63.58 Aligned_cols=68 Identities=12% Similarity=0.111 Sum_probs=45.4
Q ss_pred EEEEEcCCC-CC---------------hHHHHHHHHHHhhhcCCCcEEEEecCCCCCCh--hhHHHHHHHhcccCCCCcc
Q 008885 5 RILLCGDVL-GR---------------LNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSS--ELLDEFMNYVEGRSEIPIP 66 (550)
Q Consensus 5 KILv~GDvh-G~---------------~~~l~~kv~~l~~k~GpfD~li~~GDff~~~~--~~~~~~~~~l~g~~~~p~p 66 (550)
+.|+++|+| |. +.++++++.++-++. ++|.||++||++.... ....++.+++. .+..+
T Consensus 16 ~~LvisDlHLG~~~~~~~~Gi~~P~~~~~~~l~rl~~li~~~-~~d~vIi~GDl~h~~~~~~~~~~~~~~l~---~~~~~ 91 (225)
T TIGR00024 16 DKAVIADLHLGFERHLDEQGVMVPGFQFREIIERALSIADKY-GIEALIINGDLKHEFKKGLEWRFIREFIE---VTFRD 91 (225)
T ss_pred CeEEEEeccCCCHHHHHhcCCcCChhHHHHHHHHHHHHHhhc-CCCEEEEcCccccccCChHHHHHHHHHHH---hcCCc
Confidence 689999999 42 113445555544444 5899999999974311 33445666763 34568
Q ss_pred EEEEecCCCC
Q 008885 67 TYFIGDYGVG 76 (550)
Q Consensus 67 tyfv~GNhe~ 76 (550)
+++|.||||.
T Consensus 92 v~~V~GNHD~ 101 (225)
T TIGR00024 92 LILIRGNHDA 101 (225)
T ss_pred EEEECCCCCC
Confidence 9999999974
No 99
>COG0737 UshA 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases [Nucleotide transport and metabolism]
Probab=96.81 E-value=0.036 Score=61.73 Aligned_cols=213 Identities=14% Similarity=0.079 Sum_probs=116.9
Q ss_pred CCEEEEEcCCCCChH---------------HHHHHHHHHhhhcCCCcEEEEecCCCCCCh--hh---HHHHHHHhcccCC
Q 008885 3 PPRILLCGDVLGRLN---------------QLFKRVQSVNKSAGPFDAVLCVGQFFPDSS--EL---LDEFMNYVEGRSE 62 (550)
Q Consensus 3 ~~KILv~GDvhG~~~---------------~l~~kv~~l~~k~GpfD~li~~GDff~~~~--~~---~~~~~~~l~g~~~ 62 (550)
++.||.+.|+||++. .+...+..+.++. +-.++|-+||++.... .. -.-..+++ ..
T Consensus 26 ~l~ilhtnD~H~~l~~~~~~~~~~~~~g~~~~~~~v~~~ra~~-~~~llld~GD~~~G~~l~~~~~~g~~~~~~m---N~ 101 (517)
T COG0737 26 KLTILHTNDLHGHLEPYDYDDDGDTDGGLARIATLVKQLRAEN-KNVLLLDAGDLIQGSPLSDYLTKGEPTVDLL---NA 101 (517)
T ss_pred eEEEEEeccccccceeccccccCcccccHHHHHHHHHHHHhhc-CCeEEEeCCcccCCccccccccCCChHHHHH---hh
Confidence 578999999999998 6666666666655 3578999999864311 00 00112222 22
Q ss_pred CCccEEEEecCCCChHH--HHHHhhccccccCcccCCceecCcEEEcC--------CCCeEEEcCeEEEEEeCccC--CC
Q 008885 63 IPIPTYFIGDYGVGAAK--VLLAASKNSANQGFKMDGFKVTDNLFWLK--------GSGNFTLHGLSVAYLSGRQS--SE 130 (550)
Q Consensus 63 ~p~ptyfv~GNhe~~~~--~l~~l~~~~~~~~~~~~g~ei~~Nl~~Lg--------~~gv~~i~GlrIa~lgG~~~--~~ 130 (550)
++. -+.+.||||.... .+..+... ..-..++.|++.=. ..-|++++|+||+.+|=.-+ ..
T Consensus 102 m~y-Da~tiGNHEFd~g~~~l~~~~~~-------~~fp~l~aNv~~~~~~~~~~~~Py~I~~~~g~KIgiIG~~~~~~~~ 173 (517)
T COG0737 102 LGY-DAMTLGNHEFDYGLEALARLLDE-------AKFPVLSANVYDKNSTGPPFFKPYAIKEVGGVKIGIIGLTTPTIPT 173 (517)
T ss_pred cCC-cEEeecccccccCHHHHHHHHhc-------cCCceEEeeeEecCCCCccCcCCeEEEecCCeEEEEEEecCCcccc
Confidence 322 4667789997643 23333211 11236788887661 23355678999999995521 11
Q ss_pred CC-----CCCCCCHHHHHHHHHhhc-C-CCCcc--EEEeCCCCccccccccccccccccCCCCCCcHHHHHHHHHhCCCE
Q 008885 131 GQ-----QFGTYSQDDVDALRALAE-E-PGIVD--LFLTNEWPSGVTNKAAASDMLVGISDSSNTDSTVSELVAEIKPRY 201 (550)
Q Consensus 131 ~~-----~~~~~te~di~~L~~l~~-~-~~~vD--ILLTh~wP~gi~~~~~~~~~~~~~~~~~~Gs~~i~~l~~~lkPRY 201 (550)
.. .-+.|+ +.++.+.++.. . ..++| |+|||..-..-...... .+ +. +.... .....
T Consensus 174 ~~~~~~~~~~~f~-d~~e~~~~~i~elk~~~vD~iI~LsH~G~~~d~~~~~~--~~--------~~--~~~~~--~~iD~ 238 (517)
T COG0737 174 WEKPNAIEGVTFR-DPIEAAKKYIPELKGEGVDVIIALSHLGIEDDLELASE--VP--------GD--VDVAV--PGIDL 238 (517)
T ss_pred cccccccCCcEEc-CHHHHHHHHHHHHHhcCCCEEEEEeccCcCcccccccc--cc--------cc--ccccc--cCcce
Confidence 11 112443 33444443221 1 12266 58899755433221110 01 00 00000 33889
Q ss_pred EEEccCCCccccccccCCCCcceeEEEEcCCCCCcccceeEEEeccCC
Q 008885 202 HIAGSKGVFYAREPYSNVDAVHVTRFLGLAPVGNKEKQKFIHALSPTP 249 (550)
Q Consensus 202 hf~Gh~~~f~er~Py~~~~~~~~TRFI~La~~g~~~K~Kw~yAf~i~p 249 (550)
.|.||.|..++..-+ ......|-.+..|.+|. ++.=+.|+-
T Consensus 239 i~~GH~H~~~~~~~~--~~~~~~t~ivqag~~gk-----~vG~~di~~ 279 (517)
T COG0737 239 IIGGHSHTVFPGGDK--PGTVNGTPIVQAGEYGK-----YVGVLDITF 279 (517)
T ss_pred EeccCCcccccCCcc--cCccCCEEEEccChhhC-----ceeEEEEEE
Confidence 999999876665421 11345688888888875 666666654
No 100
>cd08162 MPP_PhoA_N Synechococcus sp. strain PCC 7942 PhoA and related proteins, N-terminal metallophosphatase domain. Synechococcus sp. strain PCC 7942 PhoA is a large atypical alkaline phosphatase. It is known to be transported across the inner cytoplasmic membrane and into the periplasmic space. In vivo inactivation of the gene encoding PhoA leads to a loss of extracellular, phosphate-regulated phosphatase activity, but does not appear to affect the cells capacity for phosphate uptake. PhoA may play a role in scavenging phosphate during growth of Synechococcus sp. strain PCC 7942 in its natural environment. PhoA belongs to a domain family which includes the bacterial enzyme UshA and several other related enzymes including SoxB, CpdB, YhcR, and CD73. All members have a similar domain architecture which includes an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly relat
Probab=96.76 E-value=0.054 Score=56.44 Aligned_cols=41 Identities=17% Similarity=0.097 Sum_probs=27.5
Q ss_pred CEEEEEcCCCCChH------HHHHHHHHHhhh---cCCCcEEEEecCCCC
Q 008885 4 PRILLCGDVLGRLN------QLFKRVQSVNKS---AGPFDAVLCVGQFFP 44 (550)
Q Consensus 4 ~KILv~GDvhG~~~------~l~~kv~~l~~k---~GpfD~li~~GDff~ 44 (550)
++||.+.|+||++. ++...++++.++ .++--++|-+||+|.
T Consensus 1 l~IlhtnD~Hg~~~~~gg~ar~a~~i~~~r~~~~~~~~~~l~ldaGD~~q 50 (313)
T cd08162 1 LQLLHTSDGESGLLAEDDAPNFSALVNALKDEAAAEYDNTLTLSSGDNFI 50 (313)
T ss_pred CeEEEecccccCccccCCHHHHHHHHHHHHHhhhccCCCeEEEecCcccc
Confidence 47999999999863 333334444332 145569999999864
No 101
>cd07416 MPP_PP2B PP2B, metallophosphatase domain. PP2B (calcineurin) is a unique serine/threonine protein phosphatase in its regulation by a second messenger (calcium and calmodulin). PP2B is involved in many biological processes including immune responses, the second messenger cAMP pathway, sodium/potassium ion transport in the nephron, cell cycle progression in lower eukaryotes, cardiac hypertrophy, and memory formation. PP2B is highly conserved from yeast to humans, but is absent from plants. PP2B is a heterodimer consisting of a catalytic subunit (CnA) and a regulatory subunit (CnB); CnB contains four Ca2+ binding motifs referred to as EF hands. The PPP (phosphoprotein phosphatase) family, to which PP2B belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -G
Probab=96.73 E-value=0.0036 Score=64.92 Aligned_cols=72 Identities=13% Similarity=0.211 Sum_probs=47.9
Q ss_pred CEEEEEcCCCCChHHHHHHHHHHhhhcCCCcEEEEecCCCCCChhhHHHHHHHhcccCCCCccEEEEecCCCCh
Q 008885 4 PRILLCGDVLGRLNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSSELLDEFMNYVEGRSEIPIPTYFIGDYGVGA 77 (550)
Q Consensus 4 ~KILv~GDvhG~~~~l~~kv~~l~~k~GpfD~li~~GDff~~~~~~~~~~~~~l~g~~~~p~ptyfv~GNhe~~ 77 (550)
.+|.|+||+||++..+...+..... .+-|-++++||+..-+....+.+.-++.-+...|--++.+-||||..
T Consensus 43 ~~i~ViGDIHG~~~dL~~l~~~~g~--~~~~~ylFLGDyVDRG~~s~Evi~lL~~lki~~p~~v~lLRGNHE~~ 114 (305)
T cd07416 43 APVTVCGDIHGQFYDLLKLFEVGGS--PANTRYLFLGDYVDRGYFSIECVLYLWALKILYPKTLFLLRGNHECR 114 (305)
T ss_pred CCEEEEEeCCCCHHHHHHHHHhcCC--CCCceEEEECCccCCCCChHHHHHHHHHHHhhcCCCEEEEeCCCcHH
Confidence 4799999999999997765543221 14589999999976444333333333321234555689999999963
No 102
>cd07390 MPP_AQ1575 Aquifex aeolicus AQ1575 and related proteins, metallophosphatase domain. This family includes bacterial and archeal proteins homologous to AQ1575, an uncharacterized Aquifex aeolicus protein. AQ1575 may play an accessory role in DNA repair, based on the close proximity of its gene to Holliday junction resolvasome genes. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a d
Probab=96.69 E-value=0.0047 Score=58.24 Aligned_cols=65 Identities=15% Similarity=0.171 Sum_probs=42.4
Q ss_pred EEEcCCCCChHHHHH---------------HHHHHhhhcCCCcEEEEecCCCCCChhhHHHHHHHhcccCCCCccEEEEe
Q 008885 7 LLCGDVLGRLNQLFK---------------RVQSVNKSAGPFDAVLCVGQFFPDSSELLDEFMNYVEGRSEIPIPTYFIG 71 (550)
Q Consensus 7 Lv~GDvhG~~~~l~~---------------kv~~l~~k~GpfD~li~~GDff~~~~~~~~~~~~~l~g~~~~p~ptyfv~ 71 (550)
++++|+|=.....+. .++.+++...+.|.||++||++...... ...+++ ...+.|+++|.
T Consensus 2 ~~isD~Hlg~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~d~vi~~GDl~~~~~~~--~~~~~l---~~~~~~~~~v~ 76 (168)
T cd07390 2 YFTSDTHFGHANILRFCNRPFDDVEEMDEALIRNWNETVGPDDTVYHLGDFSFGGKAG--TELELL---SRLNGRKHLIK 76 (168)
T ss_pred eEecccccCCHHHHccCCCCCCCHHHHHHHHHHHHhhhcCCCCEEEEeCCCCCCCChH--HHHHHH---HhCCCCeEEEe
Confidence 678888865544322 2455555445689999999997653321 113344 34567899999
Q ss_pred cCCCC
Q 008885 72 DYGVG 76 (550)
Q Consensus 72 GNhe~ 76 (550)
|||+.
T Consensus 77 GNHD~ 81 (168)
T cd07390 77 GNHDS 81 (168)
T ss_pred CCCCc
Confidence 99985
No 103
>cd07407 MPP_YHR202W_N Saccharomyces cerevisiae YHR202W and related proteins, N-terminal metallophosphatase domain. YHR202W is an uncharacterized Saccharomyces cerevisiae UshA-like protein with two domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at
Probab=96.61 E-value=0.022 Score=58.54 Aligned_cols=117 Identities=12% Similarity=-0.019 Sum_probs=62.3
Q ss_pred CCEEEEEcCCCCChH----------------HHHHHHHHHhhhcCCCcEEEEecCCCCCCh--h----hHHHHHHHhccc
Q 008885 3 PPRILLCGDVLGRLN----------------QLFKRVQSVNKSAGPFDAVLCVGQFFPDSS--E----LLDEFMNYVEGR 60 (550)
Q Consensus 3 ~~KILv~GDvhG~~~----------------~l~~kv~~l~~k~GpfD~li~~GDff~~~~--~----~~~~~~~~l~g~ 60 (550)
+++||.+.|+||++. .+.+.+++..++.++--++|-+||++.... . .-.-.-+++
T Consensus 5 ~ltILhtnD~Hg~l~~~~~~~~~~~~~gg~a~~i~~~~~~~~~~~~~~Llld~GD~~qGs~~~~~~~~~g~~~~~~m--- 81 (282)
T cd07407 5 DINFLHTTDTHGWLGGHLNDPNYSADWGDFASFVEHMREKADQKGVDLLLVDTGDLHDGNGLSDASPPPGSYSNPIF--- 81 (282)
T ss_pred eEEEEEEcccccCCcCcCCcccccCCHHHHHHHHHHHHHHHHhcCCCEEEEeCCCccCCeeceeeecCCChHHHHHH---
Confidence 578999999999864 223334333223344346677999864210 0 001122232
Q ss_pred CCCCccEEEEecCCCChH--HHHHHhhccccccCcccCCceecCcEEEcCC----------CCeEEEc-CeEEEEEeCcc
Q 008885 61 SEIPIPTYFIGDYGVGAA--KVLLAASKNSANQGFKMDGFKVTDNLFWLKG----------SGNFTLH-GLSVAYLSGRQ 127 (550)
Q Consensus 61 ~~~p~ptyfv~GNhe~~~--~~l~~l~~~~~~~~~~~~g~ei~~Nl~~Lg~----------~gv~~i~-GlrIa~lgG~~ 127 (550)
..+++ =+++.||||... ..++.+..... ...-..++.|+++-.. .-+++.+ |+||+.+|=..
T Consensus 82 N~mgy-Da~tlGNHEFd~g~~~l~~l~~~~~----~~~fp~l~aNi~~~~~~~~~~~~~~~y~i~~~~~G~kIgiiGltt 156 (282)
T cd07407 82 RMMPY-DLLTIGNHELYNYEVADDEYEGFVP----SWGDRYLTSNVDITDDSGLLVPIGSRYRKFTTKHGLRVLAFGFLF 156 (282)
T ss_pred HhcCC-cEEeecccccCccccHHHHHHHHHh----hcCCCEEEEEEEEeCCCCcccccccceEEEEcCCCcEEEEEEEec
Confidence 22222 368899999741 12232211000 0113478889876431 2234555 99999998653
No 104
>PRK09558 ushA bifunctional UDP-sugar hydrolase/5'-nucleotidase periplasmic precursor; Reviewed
Probab=96.60 E-value=0.052 Score=61.01 Aligned_cols=113 Identities=18% Similarity=0.068 Sum_probs=62.8
Q ss_pred CCEEEEEcCCCCChHH----------HHHHHHHHhhh---cCCCcEEEEecCCCCCChhh-H---HHHHHHhcccCCCCc
Q 008885 3 PPRILLCGDVLGRLNQ----------LFKRVQSVNKS---AGPFDAVLCVGQFFPDSSEL-L---DEFMNYVEGRSEIPI 65 (550)
Q Consensus 3 ~~KILv~GDvhG~~~~----------l~~kv~~l~~k---~GpfD~li~~GDff~~~~~~-~---~~~~~~l~g~~~~p~ 65 (550)
++.||.+.|+||.+.. +-..++++.++ .++--++|-+||+|...... . .-.-+.+ ..+.+
T Consensus 34 ~ltil~tnD~Hg~~~~~~~~~~G~a~~a~~i~~~r~~~~~~~~~~l~ldaGD~~~Gs~~s~~~~g~~~i~~m---N~~g~ 110 (551)
T PRK09558 34 KITILHTNDHHGHFWRNEYGEYGLAAQKTLVDQIRKEVAAEGGSVLLLSGGDINTGVPESDLQDAEPDFRGM---NLIGY 110 (551)
T ss_pred EEEEEEecccCCCccccccCCccHHHHHHHHHHHHHHhhccCCCEEEEcCCccccceEhhhhcCCchhHHHH---hcCCC
Confidence 4679999999998741 22223333221 24456899999997532110 0 0011222 23333
Q ss_pred cEEEEecCCCChHH--HHHHhhccccccCcccCCceecCcEEEcC-------CCCeEEEcCeEEEEEeCc
Q 008885 66 PTYFIGDYGVGAAK--VLLAASKNSANQGFKMDGFKVTDNLFWLK-------GSGNFTLHGLSVAYLSGR 126 (550)
Q Consensus 66 ptyfv~GNhe~~~~--~l~~l~~~~~~~~~~~~g~ei~~Nl~~Lg-------~~gv~~i~GlrIa~lgG~ 126 (550)
- +++.||||.... .+..+-.. ..-..++.|+++-. ..-+++++|+||+.+|=.
T Consensus 111 D-a~tlGNHEFD~G~~~L~~~~~~-------a~fp~l~aNv~~~~~g~~~~~py~i~~~~G~kIgiiG~~ 172 (551)
T PRK09558 111 D-AMAVGNHEFDNPLSVLRKQEKW-------AKFPFLSANIYQKSTGERLFKPYAIFDRQGLKIAVIGLT 172 (551)
T ss_pred C-EEcccccccCcCHHHHHHhhcc-------CCCCEEEEEEEECCCCCcccCCeEEEEECCEEEEEEEEe
Confidence 3 556699997632 22222111 12347888887642 223446789999999965
No 105
>cd07414 MPP_PP1_PPKL PP1, PPKL (PP1 and kelch-like) enzymes, and related proteins, metallophosphatase domain. PP1 (protein phosphatase type 1) is a serine/threonine phosphatase that regulates many cellular processes including: cell-cycle progression, protein synthesis, muscle contraction, carbohydrate metabolism, transcription and neuronal signaling, through its interaction with at least 180 known targeting proteins. PP1 occurs in all tissues and regulates many pathways, ranging from cell-cycle progression to carbohydrate metabolism. Also included here are the PPKL (PP1 and kelch-like) enzymes including the PPQ, PPZ1, and PPZ2 fungal phosphatases. These PPKLs have a large N-terminal kelch repeat in addition to a C-terminal phosphoesterase domain. The PPP (phosphoprotein phosphatase) family, to which PP1 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, Rdg
Probab=96.59 E-value=0.0041 Score=64.13 Aligned_cols=203 Identities=15% Similarity=0.170 Sum_probs=100.8
Q ss_pred CEEEEEcCCCCChHHHHHHHHHHhhhcCCCcEEEEecCCCCCChhhHHHHHHHhcccCCCCccEEEEecCCCChHHHHHH
Q 008885 4 PRILLCGDVLGRLNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSSELLDEFMNYVEGRSEIPIPTYFIGDYGVGAAKVLLA 83 (550)
Q Consensus 4 ~KILv~GDvhG~~~~l~~kv~~l~~k~GpfD~li~~GDff~~~~~~~~~~~~~l~g~~~~p~ptyfv~GNhe~~~~~l~~ 83 (550)
.++.|+||+||++..+...+..... .+-+-+|++||+..-+....+.+.-++.-+...|--++.+-||||.. .+..
T Consensus 50 ~~i~viGDIHG~~~~L~~l~~~~~~--~~~~~~lfLGDyVDRG~~s~e~i~ll~~lk~~~p~~i~llrGNHE~~--~~~~ 125 (293)
T cd07414 50 APLKICGDIHGQYYDLLRLFEYGGF--PPESNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECA--SINR 125 (293)
T ss_pred CceEEEEecCCCHHHHHHHHHhcCC--CCcceEEEEeeEecCCCCcHHHHHHHHHhhhhCCCcEEEEecccchh--hHhh
Confidence 4699999999999998766654321 24578999999976443333333333322234555689999999963 1211
Q ss_pred hhccccccCccc-----CCce----ecCcEEEcCCCCeE-EEcCeEEEEEeCccCCCCCCCCCCCHHHHHHHHHhhcCC-
Q 008885 84 ASKNSANQGFKM-----DGFK----VTDNLFWLKGSGNF-TLHGLSVAYLSGRQSSEGQQFGTYSQDDVDALRALAEEP- 152 (550)
Q Consensus 84 l~~~~~~~~~~~-----~g~e----i~~Nl~~Lg~~gv~-~i~GlrIa~lgG~~~~~~~~~~~~te~di~~L~~l~~~~- 152 (550)
.. ||.. -+.+ +....-+|. +. .+++..++.=||..+ .. -+.++++.+.......
T Consensus 126 ~~------gf~~e~~~~y~~~l~~~~~~~f~~lP---laa~i~~~i~cvHgGi~p-~~-----~~l~~i~~i~r~~~~~~ 190 (293)
T cd07414 126 IY------GFYDECKRRYNIKLWKTFTDCFNCLP---VAAIIDEKIFCMHGGLSP-DL-----QSMEQIRRIMRPTDVPD 190 (293)
T ss_pred hc------chhhHHHHhhhHHHHHHHHHHHHHhH---HHHhhCCcEEEEccCCCc-cc-----CcHHHHhcccCCCCCCc
Confidence 10 0000 0000 001111111 11 234444444455432 11 1234444433211000
Q ss_pred C--CccEEEeCCCCccccccccccccccccCCCCCCcHHHHHHHHHhCCCEEEEccCC--CccccccccCCCCcceeEEE
Q 008885 153 G--IVDLFLTNEWPSGVTNKAAASDMLVGISDSSNTDSTVSELVAEIKPRYHIAGSKG--VFYAREPYSNVDAVHVTRFL 228 (550)
Q Consensus 153 ~--~vDILLTh~wP~gi~~~~~~~~~~~~~~~~~~Gs~~i~~l~~~lkPRYhf~Gh~~--~f~er~Py~~~~~~~~TRFI 228 (550)
. -.|+|-+ +|-..+...... +.+. ....|..++.+++++.+=++.+=||+- ..|+. + .+..-+|-|=
T Consensus 191 ~~~~~dllWs-DP~~~~~~~~~~---~Rg~-g~~fg~~~~~~Fl~~n~l~~iiR~He~~~~G~~~--~--~~~~~iTvfS 261 (293)
T cd07414 191 QGLLCDLLWS-DPDKDVQGWGEN---DRGV-SFTFGKDVVAKFLNKHDLDLICRAHQVVEDGYEF--F--AKRQLVTLFS 261 (293)
T ss_pred hhhHhhhhcc-CcccccCCCccC---CCCc-ceecCHHHHHHHHHHcCCeEEEECCccccCeEEE--e--CCCcEEEEec
Confidence 0 1233322 221112111110 1111 124689999999999999999999953 35653 1 1234578887
Q ss_pred EcCCCC
Q 008885 229 GLAPVG 234 (550)
Q Consensus 229 ~La~~g 234 (550)
+..-+|
T Consensus 262 a~~Y~~ 267 (293)
T cd07414 262 APNYCG 267 (293)
T ss_pred CCcccC
Confidence 666555
No 106
>cd07415 MPP_PP2A_PP4_PP6 PP2A, PP4, and PP6 phosphoprotein phosphatases, metallophosphatase domain. PP2A-like family of phosphoprotein phosphatases (PPP's) including PP4 and PP6. PP2A (Protein phosphatase 2A) is a critical regulator of many cellular activities. PP2A comprises about 1% of total cellular proteins. PP2A, together with protein phosphatase 1 (PP1), accounts for more than 90% of all serine/threonine phosphatase activities in most cells and tissues. The PP2A subunit in addition to having a catalytic domain homologous to PP1, has a unique C-terminal tail, containing a motif that is conserved in the catalytic subunits of all PP2A-like phosphatases including PP4 and PP6, and has an important role in PP2A regulation. The PP2A-like family of phosphatases all share a similar heterotrimeric architecture, that includes: a 65kDa scaffolding subunit (A), a 36kDa catalytic subunit (C), and one of 18 regulatory subunits (B). The PPP (phosphoprotein phosphatase) family, to which PP2
Probab=96.57 E-value=0.0043 Score=63.74 Aligned_cols=205 Identities=14% Similarity=0.115 Sum_probs=101.5
Q ss_pred CEEEEEcCCCCChHHHHHHHHHHhhhcCCCcEEEEecCCCCCChhhHHHHHHHhcccCCCCccEEEEecCCCChH-----
Q 008885 4 PRILLCGDVLGRLNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSSELLDEFMNYVEGRSEIPIPTYFIGDYGVGAA----- 78 (550)
Q Consensus 4 ~KILv~GDvhG~~~~l~~kv~~l~~k~GpfD~li~~GDff~~~~~~~~~~~~~l~g~~~~p~ptyfv~GNhe~~~----- 78 (550)
.++.|+||+||++..+...+..... .+-+-+|++||+..-+....+.+.-++.-+...|-.++++-||||...
T Consensus 42 ~~i~vvGDIHG~~~dL~~ll~~~~~--~~~~~~lfLGDyVDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~~~~~~y 119 (285)
T cd07415 42 SPVTVCGDIHGQFYDLLELFRVGGD--PPDTNYLFLGDYVDRGYYSVETFLLLLALKVRYPDRITLLRGNHESRQITQVY 119 (285)
T ss_pred CCEEEEEeCCCCHHHHHHHHHHcCC--CCCCeEEEEeEECCCCcCHHHHHHHHHHHhhcCCCcEEEEecccchHhhhhhc
Confidence 4689999999999998765544321 245789999999764433333332222212345667999999999631
Q ss_pred HHHHHhhccccccCcccCC--ceecCcEEEcCCCCeE-EEcCeEEEEEeCccCCCCCCCCCCCHHHHHHHHHhhcCC---
Q 008885 79 KVLLAASKNSANQGFKMDG--FKVTDNLFWLKGSGNF-TLHGLSVAYLSGRQSSEGQQFGTYSQDDVDALRALAEEP--- 152 (550)
Q Consensus 79 ~~l~~l~~~~~~~~~~~~g--~ei~~Nl~~Lg~~gv~-~i~GlrIa~lgG~~~~~~~~~~~~te~di~~L~~l~~~~--- 152 (550)
.+.++... .+ + ... ..+.....+|. +. .+++..++.=||. ++... +.++++.+.......
T Consensus 120 gf~~e~~~-~y--~--~~~l~~~~~~~f~~lP---laaii~~~i~cvHgGi-~p~~~-----~~~~i~~i~r~~~~~~~~ 185 (285)
T cd07415 120 GFYDECLR-KY--G--NANVWKYCTDLFDYLP---LAALIDNQIFCVHGGL-SPSID-----TLDQIRAIDRFQEVPHEG 185 (285)
T ss_pred chhHHHHH-hc--C--chHHHHHHHHHHHHhH---HHhEeCCeEEEEcCCC-CCCcc-----cHHHhhcccCCCCCCCCC
Confidence 01111100 00 0 000 00001111111 11 2345334433444 22111 234444443321111
Q ss_pred CCccEEEeCCCCccccccccccccccccCCCCCCcHHHHHHHHHhCCCEEEEccCC--CccccccccCCCCcceeEEEEc
Q 008885 153 GIVDLFLTNEWPSGVTNKAAASDMLVGISDSSNTDSTVSELVAEIKPRYHIAGSKG--VFYAREPYSNVDAVHVTRFLGL 230 (550)
Q Consensus 153 ~~vDILLTh~wP~gi~~~~~~~~~~~~~~~~~~Gs~~i~~l~~~lkPRYhf~Gh~~--~f~er~Py~~~~~~~~TRFI~L 230 (550)
--.|+|-+ +|-.. ..... .+.+. ....|..++.+++++..-++.+=||+- ..|+.. + +..-+|-|=+.
T Consensus 186 ~~~dllWs-DP~~~-~~~~~---~~Rg~-g~~fg~~~~~~Fl~~n~l~~iiR~He~~~~G~~~~-~---~~~~~TvfSa~ 255 (285)
T cd07415 186 PMCDLLWS-DPDDI-EGWGI---SPRGA-GYLFGQDVVEEFNHNNGLTLICRAHQLVMEGYQWM-F---DDKLVTVWSAP 255 (285)
T ss_pred CccceEec-CCCcc-CCCCc---CCCCC-ccccCHHHHHHHHHHCCCeEEEEcCccccceEEEe-c---CCcEEEEecCC
Confidence 12455444 22211 11111 11121 124689999999999999999999953 355532 2 13457888766
Q ss_pred CCCC
Q 008885 231 APVG 234 (550)
Q Consensus 231 a~~g 234 (550)
.-++
T Consensus 256 ~y~~ 259 (285)
T cd07415 256 NYCY 259 (285)
T ss_pred cccC
Confidence 5553
No 107
>PTZ00239 serine/threonine protein phosphatase 2A; Provisional
Probab=96.52 E-value=0.0051 Score=63.70 Aligned_cols=206 Identities=13% Similarity=0.074 Sum_probs=102.6
Q ss_pred CEEEEEcCCCCChHHHHHHHHHHhhhcCCCcEEEEecCCCCCChhhHHHHHHHhcccCCCCccEEEEecCCCChHH----
Q 008885 4 PRILLCGDVLGRLNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSSELLDEFMNYVEGRSEIPIPTYFIGDYGVGAAK---- 79 (550)
Q Consensus 4 ~KILv~GDvhG~~~~l~~kv~~l~~k~GpfD~li~~GDff~~~~~~~~~~~~~l~g~~~~p~ptyfv~GNhe~~~~---- 79 (550)
..+.|+||+||++..+...+..+.. -+-+-+|++||+..-+....+.+.-++.-+...|--++++-||||...-
T Consensus 43 ~~i~vvGDIHG~~~~L~~l~~~~~~--~~~~~~lfLGDyVDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~~~~~~~ 120 (303)
T PTZ00239 43 APVNVCGDIHGQFYDLQALFKEGGD--IPNANYIFIGDFVDRGYNSVETMEYLLCLKVKYPGNITLLRGNHESRQCTQVY 120 (303)
T ss_pred CCEEEEEeCCCCHHHHHHHHHhcCC--CCCceEEEeeeEcCCCCCHHHHHHHHHHhhhcCCCcEEEEecccchHHHhhhc
Confidence 3589999999999998766654321 1457899999996544333333333332223445568999999996310
Q ss_pred -HHHHhhccccccCcccCCc--eecCcEEEcCCCCeE-EEcCeEEEEEeCccCCCCCCCCCCCHHHHHHHHHhhcCC---
Q 008885 80 -VLLAASKNSANQGFKMDGF--KVTDNLFWLKGSGNF-TLHGLSVAYLSGRQSSEGQQFGTYSQDDVDALRALAEEP--- 152 (550)
Q Consensus 80 -~l~~l~~~~~~~~~~~~g~--ei~~Nl~~Lg~~gv~-~i~GlrIa~lgG~~~~~~~~~~~~te~di~~L~~l~~~~--- 152 (550)
+.++... .+ + .... .+.....+|. +. .+++..++.=||..+. .. +.++++.+.......
T Consensus 121 gf~~e~~~-ky--~--~~~~~~~~~~~f~~LP---laaii~~~i~cvHgGi~p~-~~-----~l~~i~~i~r~~~~~~~~ 186 (303)
T PTZ00239 121 GFYEEILR-KY--G--NSNPWRLFMDVFDCLP---LAALIEGQILCVHGGLSPD-MR-----TIDQIRTIDRKIEIPHEG 186 (303)
T ss_pred ChHHHHHH-Hh--c--ChhHHHHHHHHHHhCc---hheEEcCeEEEEcCccCcc-cc-----cHhhhccccCCCCCCCCC
Confidence 1111110 00 0 0000 0011111222 11 2456555555565321 11 233344433211110
Q ss_pred CCccEEEeCCCCccccccccccccccccCCCCCCcHHHHHHHHHhCCCEEEEccCC--CccccccccCCCCcceeEEEEc
Q 008885 153 GIVDLFLTNEWPSGVTNKAAASDMLVGISDSSNTDSTVSELVAEIKPRYHIAGSKG--VFYAREPYSNVDAVHVTRFLGL 230 (550)
Q Consensus 153 ~~vDILLTh~wP~gi~~~~~~~~~~~~~~~~~~Gs~~i~~l~~~lkPRYhf~Gh~~--~f~er~Py~~~~~~~~TRFI~L 230 (550)
--.|+|-+ +|. ....... .+.+. ....|..++.+++++.+=++.+=||+- ..|+.. |. +..-+|-|=+.
T Consensus 187 ~~~dllWs-DP~-~~~~~~~---~~Rg~-g~~fg~~~~~~Fl~~n~l~~iiR~He~~~~G~~~~-~~--~~~~iTvfSa~ 257 (303)
T PTZ00239 187 PFCDLMWS-DPE-EVEYWAV---NSRGA-GYLFGAKVTKEFCRLNDLTLICRAHQLVMEGYKYW-FP--DQNLVTVWSAP 257 (303)
T ss_pred CceeeEec-Ccc-ccCCCcc---CCCCC-ccccCHHHHHHHHHHCCCcEEEEcChhhccceEEE-eC--CCeEEEEECCC
Confidence 11354433 221 1111111 01121 124789999999999999999999953 255531 21 12347888766
Q ss_pred CCCC
Q 008885 231 APVG 234 (550)
Q Consensus 231 a~~g 234 (550)
.-++
T Consensus 258 ~Y~~ 261 (303)
T PTZ00239 258 NYCY 261 (303)
T ss_pred cccC
Confidence 5543
No 108
>cd00842 MPP_ASMase acid sphingomyelinase and related proteins, metallophosphatase domain. Acid sphingomyelinase (ASMase) is a ubiquitously expressed phosphodiesterase which hydrolyzes sphingomyelin in acid pH conditions to form ceramide, a bioactive second messenger, as part of the sphingomyelin signaling pathway. ASMase is localized at the noncytosolic leaflet of biomembranes (for example the luminal leaflet of endosomes, lysosomes and phagosomes, and the extracellular leaflet of plasma membranes). ASMase-deficient humans develop Niemann-Pick disease. This disease is characterized by lysosomal storage of sphingomyelin in all tissues. Although ASMase-deficient mice are resistant to stress-induced apoptosis, they have greater susceptibility to bacterial infection. The latter correlates with defective phagolysosomal fusion and antibacterial killing activity in ASMase-deficient macrophages. ASMase belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but
Probab=96.48 E-value=0.12 Score=53.10 Aligned_cols=175 Identities=11% Similarity=0.042 Sum_probs=87.2
Q ss_pred HHHHHHHHhhhcCCCcEEEEecCCCCCChh-----h-----HHHHHHHhcccCCCCccEEEEecCCCChHH---------
Q 008885 19 LFKRVQSVNKSAGPFDAVLCVGQFFPDSSE-----L-----LDEFMNYVEGRSEIPIPTYFIGDYGVGAAK--------- 79 (550)
Q Consensus 19 l~~kv~~l~~k~GpfD~li~~GDff~~~~~-----~-----~~~~~~~l~g~~~~p~ptyfv~GNhe~~~~--------- 79 (550)
+-+.++.+.+...++|+||+.||+...... . ...+.+.+.. .-..+|+|++.||||..+.
T Consensus 55 ~~s~l~~i~~~~~~~dfii~tGD~v~h~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~pv~~~~GNHD~~p~~~~~~~~~~ 133 (296)
T cd00842 55 VESALEAIKKNHPKPDFILWTGDLVRHDVDEQTPETLVLISISNLTSLLKK-AFPDTPVYPALGNHDSYPVNQFPPNNSP 133 (296)
T ss_pred HHHHHHHHHHhCCCCCEEEEcCCCCCCCchhhchhHHHHHHHHHHHHHHHH-hCCCCCEEEcCCCCCCCcccccCCcccc
Confidence 333455555444678999999999654211 0 1122222211 1246899999999986421
Q ss_pred --HHHHhhccccccCcccCCceecCc--EEEcCCCCeE--E-EcCeEEEEEeCccCCCCCC-----CCCCCHHHHHHHHH
Q 008885 80 --VLLAASKNSANQGFKMDGFKVTDN--LFWLKGSGNF--T-LHGLSVAYLSGRQSSEGQQ-----FGTYSQDDVDALRA 147 (550)
Q Consensus 80 --~l~~l~~~~~~~~~~~~g~ei~~N--l~~Lg~~gv~--~-i~GlrIa~lgG~~~~~~~~-----~~~~te~di~~L~~ 147 (550)
.++.+.. .|. .++..+ -.+. ++|-+ . ..|++|.+|.-..-..... ......++++-|++
T Consensus 134 ~~~~~~~~~-~w~-------~~l~~~~~~~~~-~ggYY~~~~~~~l~vI~Lnt~~~~~~~~~~~~~~~~~~~~Ql~WL~~ 204 (296)
T cd00842 134 SWLYDALAE-LWK-------SWLPEEAEETFK-KGGYYSVPVKPGLRVISLNTNLYYKKNFWLLGSNETDPAGQLQWLED 204 (296)
T ss_pred cHHHHHHHH-HHH-------hhcCHHHHHHhh-cceEEEEEcCCCeEEEEEeCccccccChhhhccCCCCHHHHHHHHHH
Confidence 1222210 010 000000 0011 12323 3 4688888886543211110 01112334443433
Q ss_pred h-h--cCCCCccEEEeCCCCccccccccccccccccCCCCCCcHHHHHHHHHhC--CCEEEEccCCCccccc
Q 008885 148 L-A--EEPGIVDLFLTNEWPSGVTNKAAASDMLVGISDSSNTDSTVSELVAEIK--PRYHIAGSKGVFYARE 214 (550)
Q Consensus 148 l-~--~~~~~vDILLTh~wP~gi~~~~~~~~~~~~~~~~~~Gs~~i~~l~~~lk--PRYhf~Gh~~~f~er~ 214 (550)
. . +....-=|++.|.||...... . .......+.+|+++.+ ....|+||.|...-+.
T Consensus 205 ~L~~a~~~~~~v~I~~HiPp~~~~~~-~----------~~~~~~~~~~ii~~y~~~i~~~~~GH~H~d~~~~ 265 (296)
T cd00842 205 ELQEAEQAGEKVWIIGHIPPGVNSYD-T----------LENWSERYLQIINRYSDTIAGQFFGHTHRDEFRV 265 (296)
T ss_pred HHHHHHHCCCeEEEEeccCCCCcccc-c----------chHHHHHHHHHHHHHHHhhheeeecccccceEEE
Confidence 1 1 111222368899988653210 0 0134677888898887 7889999988644443
No 109
>cd07417 MPP_PP5_C PP5, C-terminal metallophosphatase domain. Serine/threonine protein phosphatase-5 (PP5) is a member of the PPP gene family of protein phosphatases that is highly conserved among eukaryotes and widely expressed in mammalian tissues. PP5 has a C-terminal phosphatase domain and an extended N-terminal TPR (tetratricopeptide repeat) domain containing three TPR motifs. The PPP (phosphoprotein phosphatase) family, to which PP5 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cel
Probab=96.48 E-value=0.0054 Score=63.88 Aligned_cols=211 Identities=14% Similarity=0.162 Sum_probs=102.7
Q ss_pred CEEEEEcCCCCChHHHHHHHHHHhhhcCCCcEEEEecCCCCCChhhHHHHHHHhcccCCCCccEEEEecCCCChHHHHHH
Q 008885 4 PRILLCGDVLGRLNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSSELLDEFMNYVEGRSEIPIPTYFIGDYGVGAAKVLLA 83 (550)
Q Consensus 4 ~KILv~GDvhG~~~~l~~kv~~l~~k~GpfD~li~~GDff~~~~~~~~~~~~~l~g~~~~p~ptyfv~GNhe~~~~~l~~ 83 (550)
.++.|+||+||++..+...+....-. .+-|-+|.+||+..-+....+.+.-++.=+...|--++.+-||||.. .+..
T Consensus 60 ~~~~VvGDIHG~~~dL~~ll~~~g~~-~~~~~ylFLGDyVDRG~~S~Evl~ll~~lki~~p~~v~lLRGNHE~~--~~~~ 136 (316)
T cd07417 60 EKITVCGDTHGQFYDLLNIFELNGLP-SETNPYLFNGDFVDRGSFSVEVILTLFAFKLLYPNHFHLNRGNHETD--NMNK 136 (316)
T ss_pred ceeEEeecccCCHHHHHHHHHhcCCC-CccCeEEEEeeEecCCCChHHHHHHHHHhhhccCCceEEEeeccchH--HHHH
Confidence 46999999999999987655433211 12268999999975444333333333221233455588999999963 2221
Q ss_pred hhc--cccccCcccCC-ceecCcEEEcCCCCeEEEcCeEEEEEeCccCCCCCCCCCCCHHHHHHHHHhhcCC---CCccE
Q 008885 84 ASK--NSANQGFKMDG-FKVTDNLFWLKGSGNFTLHGLSVAYLSGRQSSEGQQFGTYSQDDVDALRALAEEP---GIVDL 157 (550)
Q Consensus 84 l~~--~~~~~~~~~~g-~ei~~Nl~~Lg~~gv~~i~GlrIa~lgG~~~~~~~~~~~~te~di~~L~~l~~~~---~~vDI 157 (550)
... .+....+...- ..+...+.+|.-.- .+++..++.=||..+.. ..+-++++.+....... --.|+
T Consensus 137 ~~gf~~e~~~k~~~~l~~~~~~~f~~LPlaa--ii~~~~~~vHgGi~~~~-----~~~l~~i~~i~r~~~~~~~~~~~dl 209 (316)
T cd07417 137 MYGFEGEVKAKYNEQMFDLFSEVFNWLPLAH--LINGKVLVVHGGLFSDD-----GVTLDDIRKIDRFRQPPDSGLMCEL 209 (316)
T ss_pred HhhhcchhhhcccHHHHHHHHHHHHhchHhh--eeCCeEEEEccccccCC-----CccHHHhhcccCCCCCCccccceee
Confidence 110 00000000000 00111111221111 24454455555653321 12344444443321110 11343
Q ss_pred EEeCCCCccccccccccccccccCCCCCCcHHHHHHHHHhCCCEEEEccCC--CccccccccCCCCcceeEEEEcCCCC
Q 008885 158 FLTNEWPSGVTNKAAASDMLVGISDSSNTDSTVSELVAEIKPRYHIAGSKG--VFYAREPYSNVDAVHVTRFLGLAPVG 234 (550)
Q Consensus 158 LLTh~wP~gi~~~~~~~~~~~~~~~~~~Gs~~i~~l~~~lkPRYhf~Gh~~--~f~er~Py~~~~~~~~TRFI~La~~g 234 (550)
|-+ +|-. ...... .+.+.. ...|.+++.+++++..=++.+-||+- ..|+.. + +..-+|-|=+..-+|
T Consensus 210 lWs-DP~~-~~~~~~---s~Rg~g-~~fg~~~~~~Fl~~n~l~~iiR~He~~~~G~~~~-~---~~~~~TvfSa~~Y~~ 278 (316)
T cd07417 210 LWS-DPQP-QPGRSP---SKRGVG-CQFGPDVTKRFLEENNLEYIIRSHEVKDEGYEVE-H---DGKCITVFSAPNYCD 278 (316)
T ss_pred eec-CCCC-CCCCCc---cCCCCc-eEeCHHHHHHHHHHcCCcEEEECCcccceeEEEe-c---CCeEEEEeCCccccC
Confidence 333 2211 111111 111111 24689999999999999999999963 356632 1 235578887665544
No 110
>PTZ00480 serine/threonine-protein phosphatase; Provisional
Probab=96.41 E-value=0.0067 Score=63.17 Aligned_cols=205 Identities=16% Similarity=0.150 Sum_probs=103.3
Q ss_pred CEEEEEcCCCCChHHHHHHHHHHhhhcCCCcEEEEecCCCCCChhhHHHHHHHhcccCCCCccEEEEecCCCChHHHHHH
Q 008885 4 PRILLCGDVLGRLNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSSELLDEFMNYVEGRSEIPIPTYFIGDYGVGAAKVLLA 83 (550)
Q Consensus 4 ~KILv~GDvhG~~~~l~~kv~~l~~k~GpfD~li~~GDff~~~~~~~~~~~~~l~g~~~~p~ptyfv~GNhe~~~~~l~~ 83 (550)
.+|.|+||+||++..+...+..... .+-+-.|++||+..-+....+.+.-++.-+...|-.++.+-||||.. .+..
T Consensus 59 ~~i~vvGDIHG~~~dL~~l~~~~g~--~~~~~ylfLGDyVDRG~~s~evl~ll~~lki~~p~~v~llRGNHE~~--~~~~ 134 (320)
T PTZ00480 59 APLKICGDVHGQYFDLLRLFEYGGY--PPESNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECA--SINR 134 (320)
T ss_pred CCeEEEeecccCHHHHHHHHHhcCC--CCcceEEEeceecCCCCCcHHHHHHHHHhcccCCCceEEEecccchh--hhhh
Confidence 4699999999999998765543221 14577889999975443333333333322244566689999999963 1111
Q ss_pred hhccccccCccc-----CCce----ecCcEEEcCCCCeEEEcCeEEEEEeCccCCCCCCCCCCCHHHHHHHHHhhcCC--
Q 008885 84 ASKNSANQGFKM-----DGFK----VTDNLFWLKGSGNFTLHGLSVAYLSGRQSSEGQQFGTYSQDDVDALRALAEEP-- 152 (550)
Q Consensus 84 l~~~~~~~~~~~-----~g~e----i~~Nl~~Lg~~gv~~i~GlrIa~lgG~~~~~~~~~~~~te~di~~L~~l~~~~-- 152 (550)
.. ||.. -+.+ +.....+|.=.- .+++..+..=||+.+ ... +-++++.+..-....
T Consensus 135 ~y------gF~~e~~~~y~~~l~~~~~~~F~~LPlaA--iI~~~i~cvHGGI~p-~~~-----~l~~i~~i~rp~~~~~~ 200 (320)
T PTZ00480 135 IY------GFYDECKRRYTIKLWKTFTDCFNCLPVAA--LIDEKILCMHGGLSP-ELS-----NLEQIRRIMRPTDVPDT 200 (320)
T ss_pred hc------chHHHHHhhcCHHHHHHHHHHHHhccHhh--eecCcEEEEcCCcCc-ccC-----CHHHHhcccCCCCCCcc
Confidence 10 0000 0000 001111111101 245544555555532 111 233343333211000
Q ss_pred -CCccEEEeCCCCccccccccccccccccCCCCCCcHHHHHHHHHhCCCEEEEccCC--CccccccccCCCCcceeEEEE
Q 008885 153 -GIVDLFLTNEWPSGVTNKAAASDMLVGISDSSNTDSTVSELVAEIKPRYHIAGSKG--VFYAREPYSNVDAVHVTRFLG 229 (550)
Q Consensus 153 -~~vDILLTh~wP~gi~~~~~~~~~~~~~~~~~~Gs~~i~~l~~~lkPRYhf~Gh~~--~f~er~Py~~~~~~~~TRFI~ 229 (550)
--.|+|-+ +|-..+..... .+.+. ....|..++.+++++..-.+.+=||+- ..|+.. .+..-+|-|=+
T Consensus 201 ~~~~dllWS-DP~~~~~~~~~---s~RG~-g~~FG~~~~~~Fl~~n~l~~IiR~Hq~v~~G~~~~----~~~~~iTvFSa 271 (320)
T PTZ00480 201 GLLCDLLWS-DPDKDVQGWAD---NERGV-SYVFSQEIVQVFLKKHELDLICRAHQVVEDGYEFF----SKRQLVTLFSA 271 (320)
T ss_pred chhhheeec-CcccccCCCcc---CCCCC-ccccCHHHHHHHHHhCCCcEEEEcCccccCceEEe----CCCcEEEEeCC
Confidence 01344433 22222211111 01121 124799999999999999999999953 355531 12456888887
Q ss_pred cCCCCC
Q 008885 230 LAPVGN 235 (550)
Q Consensus 230 La~~g~ 235 (550)
..-+|.
T Consensus 272 ~~Y~~~ 277 (320)
T PTZ00480 272 PNYCGE 277 (320)
T ss_pred cccCCC
Confidence 766654
No 111
>PTZ00244 serine/threonine-protein phosphatase PP1; Provisional
Probab=96.40 E-value=0.0053 Score=63.33 Aligned_cols=206 Identities=13% Similarity=0.138 Sum_probs=102.2
Q ss_pred EEEEEcCCCCChHHHHHHHHHHhhhcCCCcEEEEecCCCCCChhhHHHHHHHhcccCCCCccEEEEecCCCChHH-----
Q 008885 5 RILLCGDVLGRLNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSSELLDEFMNYVEGRSEIPIPTYFIGDYGVGAAK----- 79 (550)
Q Consensus 5 KILv~GDvhG~~~~l~~kv~~l~~k~GpfD~li~~GDff~~~~~~~~~~~~~l~g~~~~p~ptyfv~GNhe~~~~----- 79 (550)
.+.|+||+||++..+...++.+.. .+.|-++++||+..-+....+.+.-++.-+...|-.++.+-||||...-
T Consensus 53 p~~ViGDIHG~~~~L~~l~~~~~~--~~~~~~lfLGDyVDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~~~~~~~g 130 (294)
T PTZ00244 53 PVRVCGDTHGQYYDLLRIFEKCGF--PPYSNYLFLGDYVDRGKHSVETITLQFCYKIVYPENFFLLRGNHECASINKMYG 130 (294)
T ss_pred CceeeccCCCCHHHHHHHHHHcCC--CCcccEEEeeeEecCCCCHHHHHHHHHHHhhccCCeEEEEecccchHhHhhccC
Confidence 488999999999998766655422 2567888999996644433333332222123346679999999996310
Q ss_pred HHHHhhccccccCcccC-CceecCcEEEcCCCCeE-EEcCeEEEEEeCccCCCCCCCCCCCHHHHHHHHHhhcCC-C--C
Q 008885 80 VLLAASKNSANQGFKMD-GFKVTDNLFWLKGSGNF-TLHGLSVAYLSGRQSSEGQQFGTYSQDDVDALRALAEEP-G--I 154 (550)
Q Consensus 80 ~l~~l~~~~~~~~~~~~-g~ei~~Nl~~Lg~~gv~-~i~GlrIa~lgG~~~~~~~~~~~~te~di~~L~~l~~~~-~--~ 154 (550)
+.++... .+ ... -..+.....+|. +. .+++-.+..=||..+. . -+.++++.+..-.... . -
T Consensus 131 f~~e~~~-~y----~~~l~~~~~~~f~~lP---laaii~~~il~vHgGi~p~-~-----~~l~~i~~i~rp~~~~~~~~~ 196 (294)
T PTZ00244 131 FFDDVKR-RY----NIKLFKAFTDVFNTMP---VCCVISEKIICMHGGLSPD-L-----TSLASVNEIERPCDVPDRGIL 196 (294)
T ss_pred hHHHHHH-Hh----hHHHHHHHHHHHHhCc---hheEecCeeEEEcCCCCch-h-----hHHHHhhhhccccCCCccchh
Confidence 1111110 00 000 000111111111 11 2344444444554321 0 0223333333211100 1 1
Q ss_pred ccEEEeCCCCccccccccccccccccCCCCCCcHHHHHHHHHhCCCEEEEccCC--CccccccccCCCCcceeEEEEcCC
Q 008885 155 VDLFLTNEWPSGVTNKAAASDMLVGISDSSNTDSTVSELVAEIKPRYHIAGSKG--VFYAREPYSNVDAVHVTRFLGLAP 232 (550)
Q Consensus 155 vDILLTh~wP~gi~~~~~~~~~~~~~~~~~~Gs~~i~~l~~~lkPRYhf~Gh~~--~f~er~Py~~~~~~~~TRFI~La~ 232 (550)
.|+|-+ +|-..+..... .+.+.. ...|.+++.+++++..-++.+=||+- ..|+. . .+..-+|-|=+..-
T Consensus 197 ~dllWs-DP~~~~~~~~~---~~Rg~g-~~fg~~~~~~Fl~~n~l~~iiR~Hq~~~~G~~~---~-~~~~~iTvfSa~~Y 267 (294)
T PTZ00244 197 CDLLWA-DPEDEVRGFLE---SDRGVS-YLFGEDIVNDFLDMVDMDLIVRAHQVMERGYGF---F-ASRQLVTVFSAPNY 267 (294)
T ss_pred heeeec-CcccccCCCCc---CCCCCc-cccCHHHHHHHHHHcCCcEEEEcCccccCceEE---c-CCCeEEEEeCCccc
Confidence 344433 22111111111 111211 35799999999999999999999963 35552 1 22456788876665
Q ss_pred CCC
Q 008885 233 VGN 235 (550)
Q Consensus 233 ~g~ 235 (550)
+|.
T Consensus 268 ~~~ 270 (294)
T PTZ00244 268 CGE 270 (294)
T ss_pred cCC
Confidence 543
No 112
>cd07418 MPP_PP7 PP7, metallophosphatase domain. PP7 is a plant phosphoprotein phosphatase that is highly expressed in a subset of stomata and thought to play an important role in sensory signaling. PP7 acts as a positive regulator of signaling downstream of cryptochrome blue light photoreceptors. PP7 also controls amplification of phytochrome signaling, and interacts with nucleotidediphosphate kinase 2 (NDPK2), a positive regulator of phytochrome signalling. In addition, PP7 interacts with heat shock transcription factor HSF and up-regulates protective heat shock proteins. PP7 may also play a role in salicylic acid-dependent defense signaling. The PPP (phosphoprotein phosphatase) family, to which PP7 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP2A, PP2B (calcineurin), PP4, PP5, PP6, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-,
Probab=96.34 E-value=0.0079 Score=63.87 Aligned_cols=73 Identities=14% Similarity=0.231 Sum_probs=46.2
Q ss_pred CEEEEEcCCCCChHHHHHHHHHHhhhcCCCcEEEEecCCCCCChhhHHHHHHHhcccCCCCccEEEEecCCCCh
Q 008885 4 PRILLCGDVLGRLNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSSELLDEFMNYVEGRSEIPIPTYFIGDYGVGA 77 (550)
Q Consensus 4 ~KILv~GDvhG~~~~l~~kv~~l~~k~GpfD~li~~GDff~~~~~~~~~~~~~l~g~~~~p~ptyfv~GNhe~~ 77 (550)
.+|+|+||+||++..+...++...-. .+-+.+|++||+..-+....+-+.-++.-+...|--+|.+-||||..
T Consensus 66 ~~i~VvGDIHG~~~dL~~ll~~~g~~-~~~~~ylFLGDyVDRGp~SlEvl~lL~~lki~~p~~v~lLRGNHE~~ 138 (377)
T cd07418 66 CEVVVVGDVHGQLHDVLFLLEDAGFP-DQNRFYVFNGDYVDRGAWGLETFLLLLSWKVLLPDRVYLLRGNHESK 138 (377)
T ss_pred CCEEEEEecCCCHHHHHHHHHHhCCC-CCCceEEEeccccCCCCChHHHHHHHHHHhhccCCeEEEEeeecccc
Confidence 46899999999999987666542211 11246899999965433333333322221234556689999999963
No 113
>TIGR03767 P_acnes_RR metallophosphoesterase, PPA1498 family. This model describes a small collection of probable metallophosphoresterases, related to pfam00149 but with long inserts separating some of the shared motifs such that the homology is apparent only through multiple sequence alignment. Members of this protein family, in general, have a Sec-independent TAT (twin-arginine translocation) signal sequence, N-terminal to the region modeled by this alignment. Members include YP_056203.1 from Propionibacterium acnes KPA171202.
Probab=96.26 E-value=0.13 Score=56.18 Aligned_cols=130 Identities=14% Similarity=0.117 Sum_probs=69.1
Q ss_pred EcCeEEEEEeCccCCCCCCCCCCCHHHHHHHHH-hhcCCCCccEEEeCCCCccccccccccccccccCCCCCCcHHHHHH
Q 008885 115 LHGLSVAYLSGRQSSEGQQFGTYSQDDVDALRA-LAEEPGIVDLFLTNEWPSGVTNKAAASDMLVGISDSSNTDSTVSEL 193 (550)
Q Consensus 115 i~GlrIa~lgG~~~~~~~~~~~~te~di~~L~~-l~~~~~~vDILLTh~wP~gi~~~~~~~~~~~~~~~~~~Gs~~i~~l 193 (550)
.+|++|..|--.... ......+.+++++-|++ |+.....-=|+++|.+|-.+.........+ + ........+.++
T Consensus 299 ~ggvrfIvLDSt~~~-G~~~G~L~eeQL~WLeqeLa~a~~k~VVVf~HHPp~s~g~~~~Dp~~p-g--~~~~n~~eLldL 374 (496)
T TIGR03767 299 AGGVRGISMDTTNRA-GGDEGSLGQTQFKWIKDTLRASSDTLFVLFSHHTSWSMVNELTDPVDP-G--EKRHLGTELVSL 374 (496)
T ss_pred ECCEEEEEEeCCCcC-CCcCCccCHHHHHHHHHHHhcCCCCCEEEEECCCCccccccccccccc-c--ccccCHHHHHHH
Confidence 356777766544221 11234567777777775 333334456888999886542211100001 0 012234567777
Q ss_pred HHHh-CCCEEEEccCCCcccccccc-----------CC-------CCcceeEEEEcCCCCCcccceeEEEeccCCCC
Q 008885 194 VAEI-KPRYHIAGSKGVFYAREPYS-----------NV-------DAVHVTRFLGLAPVGNKEKQKFIHALSPTPAA 251 (550)
Q Consensus 194 ~~~l-kPRYhf~Gh~~~f~er~Py~-----------~~-------~~~~~TRFI~La~~g~~~K~Kw~yAf~i~p~~ 251 (550)
++.. +-+.+|+||.|..... ++. |+ +-.+.=|.|-+.. |.+..-++.+-+|+-++
T Consensus 375 L~~ypnV~aVfsGHvH~n~i~-~~~~~~~~~p~~gfweI~TaSlvdfPq~~Ri~Ei~~--n~dgt~si~tt~vd~~~ 448 (496)
T TIGR03767 375 LLEHPNVLAWVNGHTHSNKIT-AHRRVEGVGKDKGFWEINTASHIDFPQQGRIIELAD--NQDGTVSIFTTLIESAA 448 (496)
T ss_pred HhcCCCceEEEECCcCCCccc-cccCCCCCCCcCCeEEEeccccccCCCCceEEEEEe--CCCCcEEEEEEecccCC
Confidence 7776 6788999997743311 111 11 1234556666653 33456688888876444
No 114
>cd08165 MPP_MPPE1 human MPPE1 and related proteins, metallophosphatase domain. MPPE1 is a functionally uncharacterized metallophosphatase domain-containing protein. The MPPE1 gene is located on chromosome 18 and is a candidate susceptibility gene for Bipolar disorder. MPPE1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to
Probab=96.20 E-value=0.011 Score=55.06 Aligned_cols=44 Identities=14% Similarity=0.137 Sum_probs=26.9
Q ss_pred CCcEEEEecCCCCCChh-hHHH----HHHHhcccC-CCCccEEEEecCCC
Q 008885 32 PFDAVLCVGQFFPDSSE-LLDE----FMNYVEGRS-EIPIPTYFIGDYGV 75 (550)
Q Consensus 32 pfD~li~~GDff~~~~~-~~~~----~~~~l~g~~-~~p~ptyfv~GNhe 75 (550)
+.|+||++||++..... ...+ +..+..-.. ...+|+|+|.||||
T Consensus 38 ~pd~vv~~GDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~GNHD 87 (156)
T cd08165 38 QPDVVFVLGDLFDEGKWSTDEEWEDYVERFKKMFGHPPDLPLHVVVGNHD 87 (156)
T ss_pred CCCEEEECCCCCCCCccCCHHHHHHHHHHHHHHhccCCCCeEEEEcCCCC
Confidence 57999999999864221 1111 222321111 23689999999997
No 115
>cd07419 MPP_Bsu1_C Arabidopsis thaliana Bsu1 phosphatase and related proteins, C-terminal metallophosphatase domain. Bsu1 encodes a nuclear serine-threonine protein phosphatase found in plants and protozoans. Bsu1 has a C-terminal phosphatase domain and an N-terminal Kelch-repeat domain. Bsu1 is preferentially expressed in elongating plant cells. It modulates the phosphorylation state of Bes1, a transcriptional regulator phosphorylated by the glycogen synthase kinase Bin2, as part of a steroid hormone signal transduction pathway. The PPP (phosphoprotein phosphatase) family, to which Bsu1 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most
Probab=96.02 E-value=0.016 Score=60.29 Aligned_cols=73 Identities=18% Similarity=0.304 Sum_probs=44.9
Q ss_pred CEEEEEcCCCCChHHHHHHHHHHhhh----cCC--CcEEEEecCCCCCChhhHHHHHHHhcccCCCCccEEEEecCCCC
Q 008885 4 PRILLCGDVLGRLNQLFKRVQSVNKS----AGP--FDAVLCVGQFFPDSSELLDEFMNYVEGRSEIPIPTYFIGDYGVG 76 (550)
Q Consensus 4 ~KILv~GDvhG~~~~l~~kv~~l~~k----~Gp--fD~li~~GDff~~~~~~~~~~~~~l~g~~~~p~ptyfv~GNhe~ 76 (550)
..+.|+||+||++..+...++.+.-. .|. ..-+|++||+..-+....+.+.-++.-+...|--+|.+-||||.
T Consensus 48 ~~~~viGDIHG~~~~L~~ll~~~g~~~~~~~~~~~~~~~vfLGDyVDRGp~s~evl~ll~~lk~~~p~~v~lLRGNHE~ 126 (311)
T cd07419 48 APIKIFGDIHGQFGDLMRLFDEYGSPVTEAAGDIEYIDYLFLGDYVDRGSNSLETICLLLALKVKYPNQIHLIRGNHED 126 (311)
T ss_pred CCEEEEEeccCCHHHHHHHHHHcCCCcccccCCCcCceEEEECCccCCCCChHHHHHHHHHhhhcCCCcEEEeccccch
Confidence 35899999999999987766554211 111 12478999996543332333332221123445668999999996
No 116
>TIGR00282 metallophosphoesterase, MG_246/BB_0505 family. A member of this family from Mycoplasma Pneumoniae has been crystallized and described as a novel phosphatase.
Probab=95.88 E-value=0.046 Score=55.57 Aligned_cols=70 Identities=14% Similarity=0.108 Sum_probs=45.2
Q ss_pred CEEEEEcCCCCC--hHHHHHHHHHHhhhcCCCcEEEEecCCCCCCh-hhHHHHHHHhcccCCCCccEEEEecCCCChHH
Q 008885 4 PRILLCGDVLGR--LNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSS-ELLDEFMNYVEGRSEIPIPTYFIGDYGVGAAK 79 (550)
Q Consensus 4 ~KILv~GDvhG~--~~~l~~kv~~l~~k~GpfD~li~~GDff~~~~-~~~~~~~~~l~g~~~~p~ptyfv~GNhe~~~~ 79 (550)
||||++||+=|+ ...+-+.+..+.+++ +.|++|+-||.....- -..+....+ .+.++-++- .|||..+..
T Consensus 1 m~ilfiGDi~G~~Gr~~l~~~L~~lk~~~-~~D~vIaNgEn~~gG~Gi~~~~~~~L----~~~GvDviT-~GNH~~Dkg 73 (266)
T TIGR00282 1 IKFLFIGDVYGKAGRKIVKNNLPQLKSKY-QADLVIANGENTTHGKGLTLKIYEFL----KQSGVNYIT-MGNHTWFQK 73 (266)
T ss_pred CeEEEEEecCCHHHHHHHHHHHHHHHHhC-CCCEEEEcCcccCCCCCCCHHHHHHH----HhcCCCEEE-ccchhccCc
Confidence 799999999999 455566677776666 5899999999853210 112223333 334455444 479987643
No 117
>COG1085 GalT Galactose-1-phosphate uridylyltransferase [Energy production and conversion]
Probab=95.85 E-value=0.024 Score=58.97 Aligned_cols=97 Identities=23% Similarity=0.291 Sum_probs=71.3
Q ss_pred CCCcccCCC--CCCCcceEEEECCEEEEEecCCCCCCCeEEEEeccccCCCCCCCHHHHHHHHHHHHHHHHHHhhc-C--
Q 008885 389 KECWFCLSS--PSVESHLIVSVGEYYYCALPKGPLVEDHVLVIPVEHVPNTISTSPECEKELGRFQNSLMMYYKNQ-G-- 463 (550)
Q Consensus 389 ~~C~FC~~~--~~~~~hliis~g~~~yl~l~kgpl~~gH~lIiP~~H~~s~~~l~~~~~~Ei~~~~~~L~~~~~~~-~-- 463 (550)
..|.||..- ..-.+.+||..+++.-++.|=...-|-+++|+|.+|+..+.++++++.++|-...+.+...|.+. +
T Consensus 185 ~~~~~~~~ve~E~~~~~R~v~e~~~~~a~~Pf~a~~pfEv~i~pk~hv~~l~~~sdee~~~lA~ilk~~~~~y~~~~~~~ 264 (338)
T COG1085 185 GSCMYCDLVEREKGDGERIVVENDHFLAFVPFWARWPFEVLIYPKEHVSFLTDLSDEELKDLAEILKKLLARYDNLFGNS 264 (338)
T ss_pred CCchHHHHHHHHhccCceEEecCceeEEeccccccCceEEEeccHHHhhhhhhCCHHHHHHHHHHHHHHHHHHhhccCCC
Confidence 479999764 23334578877777666666677889999999999999999999999999998888877776642 2
Q ss_pred --CceEEEe-ecC--CCcCeEEEEEee
Q 008885 464 --KEAVFFE-WLS--KRGTHANLQAVP 485 (550)
Q Consensus 464 --~~~v~~E-~~~--~~~~H~hi~~vP 485 (550)
+...|.- ..+ ....|+|++++|
T Consensus 265 fpY~m~~h~ap~~~~~~~~~~h~~~~p 291 (338)
T COG1085 265 FPYSMGFHQAPFNEVNEHYHLHAEIYP 291 (338)
T ss_pred CceeeeeecCCCCcccccceEEEEEcc
Confidence 3334443 112 224699999998
No 118
>cd07382 MPP_DR1281 Deinococcus radiodurans DR1281 and related proteins, metallophosphatase domain. DR1281 is an uncharacterized Deinococcus radiodurans protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=95.71 E-value=0.2 Score=50.68 Aligned_cols=109 Identities=14% Similarity=0.139 Sum_probs=61.0
Q ss_pred EEEEEcCCCCC--hHHHHHHHHHHhhhcCCCcEEEEecCCCCCChhhHHHHHHHhcccCCCCccEEEEecCCCChHH-HH
Q 008885 5 RILLCGDVLGR--LNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSSELLDEFMNYVEGRSEIPIPTYFIGDYGVGAAK-VL 81 (550)
Q Consensus 5 KILv~GDvhG~--~~~l~~kv~~l~~k~GpfD~li~~GDff~~~~~~~~~~~~~l~g~~~~p~ptyfv~GNhe~~~~-~l 81 (550)
|||++||+=|+ ...+.+.|.++.++. +.|++|.-||.............+.| ..+++- +++.|||+.+.. ++
T Consensus 1 ~ilfigdi~g~~G~~~~~~~l~~lk~~~-~~D~vi~NgEn~~gg~gl~~~~~~~L---~~~G~D-~iTlGNH~fD~gel~ 75 (255)
T cd07382 1 KILFIGDIVGKPGRKAVKEHLPKLKKEY-KIDFVIANGENAAGGKGITPKIAKEL---LSAGVD-VITMGNHTWDKKEIL 75 (255)
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHHHHHC-CCCEEEECCccccCCCCCCHHHHHHH---HhcCCC-EEEecccccCcchHH
Confidence 69999999997 445566677776666 58999999998432111112223333 334444 455589987644 33
Q ss_pred HHhhccccccCcccCCceecCcEEE--cCC-CCeEEEcCeEEEEEeCc
Q 008885 82 LAASKNSANQGFKMDGFKVTDNLFW--LKG-SGNFTLHGLSVAYLSGR 126 (550)
Q Consensus 82 ~~l~~~~~~~~~~~~g~ei~~Nl~~--Lg~-~gv~~i~GlrIa~lgG~ 126 (550)
+.+... .-...+-|+.. .++ ..+++.+|++|+.+|=.
T Consensus 76 ~~l~~~--------~~~l~~aN~~~~~pg~~~~i~~~~G~kIaVigl~ 115 (255)
T cd07382 76 DFIDEE--------PRLLRPANYPPGTPGRGYGVVEVNGKKIAVINLM 115 (255)
T ss_pred HHHhcC--------cCceEeeecCCCCCCCCeEEEEECCEEEEEEEEe
Confidence 333211 00011223211 122 23456789999988743
No 119
>cd07391 MPP_PF1019 Pyrococcus furiosus PF1019 and related proteins, metallophosphatase domain. This family includes bacterial and archeal proteins homologous to PF1019, an uncharacterized Pyrococcus furiosus protein. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for pro
Probab=95.71 E-value=0.022 Score=53.85 Aligned_cols=58 Identities=10% Similarity=0.086 Sum_probs=34.5
Q ss_pred HHHHHHHHHhhhcCCCcEEEEecCCCCCChh-hHHHHHHH-hcccCCCCccEEEEecCCCC
Q 008885 18 QLFKRVQSVNKSAGPFDAVLCVGQFFPDSSE-LLDEFMNY-VEGRSEIPIPTYFIGDYGVG 76 (550)
Q Consensus 18 ~l~~kv~~l~~k~GpfD~li~~GDff~~~~~-~~~~~~~~-l~g~~~~p~ptyfv~GNhe~ 76 (550)
+.++++.++..+. +.|.||++||++..... ....+... +.......+++++|.||||.
T Consensus 28 ~~~~~l~~~~~~~-~~d~lii~GDl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~GNHD~ 87 (172)
T cd07391 28 DTLERLDRLIEEY-GPERLIILGDLKHSFGGLSRQEFEEVAFLRLLAKDVDVILIRGNHDG 87 (172)
T ss_pred HHHHHHHHHHHhc-CCCEEEEeCcccccccccCHHHHHHHHHHHhccCCCeEEEEcccCcc
Confidence 4556666655554 47999999999843111 11111110 11124567899999999985
No 120
>KOG3325 consensus Membrane coat complex Retromer, subunit VPS29/PEP11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.57 E-value=0.12 Score=47.28 Aligned_cols=111 Identities=20% Similarity=0.276 Sum_probs=66.8
Q ss_pred CEEEEEcCCCC--ChHHHHHHHHHHhhhcCCCcEEEEecCCCCCChhhHHHHHHHhcccCCCCccEEEEecCCCChHHHH
Q 008885 4 PRILLCGDVLG--RLNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSSELLDEFMNYVEGRSEIPIPTYFIGDYGVGAAKVL 81 (550)
Q Consensus 4 ~KILv~GDvhG--~~~~l~~kv~~l~~k~GpfD~li~~GDff~~~~~~~~~~~~~l~g~~~~p~ptyfv~GNhe~~~~~l 81 (550)
|-+|++||.|= +-..|-.|.+++. --|++.-++|.|.+.. .+..+|+ +.+.--+-+|-|.-+
T Consensus 1 mLvL~lgD~HiP~Ra~~Lp~KFkklL-vPgki~hilctGNlcs------~e~~dyl---k~l~~dvhiVrGeFD------ 64 (183)
T KOG3325|consen 1 MLVLVLGDLHIPHRANDLPAKFKKLL-VPGKIQHILCTGNLCS------KESYDYL---KTLSSDVHIVRGEFD------ 64 (183)
T ss_pred CEEEEeccccCCccccccCHHHHhcc-CCCceeEEEEeCCcch------HHHHHHH---HhhCCCcEEEecccC------
Confidence 45899999985 2333333333333 2468899999999765 3566776 334334555666322
Q ss_pred HHhhccccccCcccCCceecCcEEEcCCCCeEEEcCeEEEEEeCccCCCCCCCCCCCHHHHHHHHHhhcCCCCccEEEe
Q 008885 82 LAASKNSANQGFKMDGFKVTDNLFWLKGSGNFTLHGLSVAYLSGRQSSEGQQFGTYSQDDVDALRALAEEPGIVDLFLT 160 (550)
Q Consensus 82 ~~l~~~~~~~~~~~~g~ei~~Nl~~Lg~~gv~~i~GlrIa~lgG~~~~~~~~~~~~te~di~~L~~l~~~~~~vDILLT 160 (550)
+|+.|-. .++++++-+||+...|-.-.+.. +.+.+..|.. .-+||||||
T Consensus 65 --------------------~~~~yP~-~kvvtvGqfkIG~chGhqViP~g-----d~~sL~~LaR----qldvDILl~ 113 (183)
T KOG3325|consen 65 --------------------ENLKYPE-NKVVTVGQFKIGLCHGHQVIPWG-----DPESLALLAR----QLDVDILLT 113 (183)
T ss_pred --------------------ccccCCc-cceEEeccEEEEeecCcEeecCC-----CHHHHHHHHH----hcCCcEEEe
Confidence 2222332 46789999999999997543332 2333333332 247999997
No 121
>KOG2679 consensus Purple (tartrate-resistant) acid phosphatase [Posttranslational modification, protein turnover, chaperones]
Probab=95.54 E-value=0.04 Score=55.30 Aligned_cols=206 Identities=13% Similarity=0.121 Sum_probs=113.3
Q ss_pred CCEEEEEcCC--CCChHHHHH--HHHHHhhhcCCCcEEEEecCCCC---C----ChhhHHHHHHHhcccCCCCccEEEEe
Q 008885 3 PPRILLCGDV--LGRLNQLFK--RVQSVNKSAGPFDAVLCVGQFFP---D----SSELLDEFMNYVEGRSEIPIPTYFIG 71 (550)
Q Consensus 3 ~~KILv~GDv--hG~~~~l~~--kv~~l~~k~GpfD~li~~GDff~---~----~~~~~~~~~~~l~g~~~~p~ptyfv~ 71 (550)
.+++||+||. +|.|.+--. ...+|.+|. .+|+||-+||=|- . ++.-.+.|+..++. ..+-.|-|-|.
T Consensus 43 slsflvvGDwGr~g~~nqs~va~qmg~ige~l-~idfvlS~GDNfYd~G~~~~~Dp~Fq~sF~nIYT~-pSLQkpWy~vl 120 (336)
T KOG2679|consen 43 SLSFLVVGDWGRRGSFNQSQVALQMGEIGEKL-DIDFVLSTGDNFYDTGLTSENDPRFQDSFENIYTA-PSLQKPWYSVL 120 (336)
T ss_pred ceEEEEEcccccCCchhHHHHHHHHHhHHHhc-cceEEEecCCcccccCCCCCCChhHHhhhhhcccC-cccccchhhhc
Confidence 4689999997 454544322 233344455 5999999999432 1 22233456666654 44667999999
Q ss_pred cCCCChHHHHHHhhccccccCcccCCceecCcEEEcCCCCeEEEcCeEEEEEe--Ccc-CCC-CCCCC------CCCHHH
Q 008885 72 DYGVGAAKVLLAASKNSANQGFKMDGFKVTDNLFWLKGSGNFTLHGLSVAYLS--GRQ-SSE-GQQFG------TYSQDD 141 (550)
Q Consensus 72 GNhe~~~~~l~~l~~~~~~~~~~~~g~ei~~Nl~~Lg~~gv~~i~GlrIa~lg--G~~-~~~-~~~~~------~~te~d 141 (550)
|||+---++.++++.--. ..+..|+|+..+|+.. -++++-+..+.-+. -.. .++ ...|. .|....
T Consensus 121 GNHDyrGnV~AQls~~l~----~~d~RW~c~rsf~~~a-e~ve~f~v~~~~f~~d~~~~~~~~~ydw~~v~PR~~~~~~~ 195 (336)
T KOG2679|consen 121 GNHDYRGNVEAQLSPVLR----KIDKRWICPRSFYVDA-EIVEMFFVDTTPFMDDTFTLCTDDVYDWRGVLPRVKYLRAL 195 (336)
T ss_pred cCccccCchhhhhhHHHH----hhccceecccHHhhcc-eeeeeeccccccchhhheecccccccccccCChHHHHHHHH
Confidence 999854444444431000 1346799999888873 44444332222221 110 110 01111 111111
Q ss_pred HHHHHH-hhcCCCCccEEEeCCCCccccccccccccccccCCCCCCcHHHHHHHHHhCCCEEEEccCCC--ccccccccC
Q 008885 142 VDALRA-LAEEPGIVDLFLTNEWPSGVTNKAAASDMLVGISDSSNTDSTVSELVAEIKPRYHIAGSKGV--FYAREPYSN 218 (550)
Q Consensus 142 i~~L~~-l~~~~~~vDILLTh~wP~gi~~~~~~~~~~~~~~~~~~Gs~~i~~l~~~lkPRYhf~Gh~~~--f~er~Py~~ 218 (550)
..-|+. +.+...+--|++-|-+-..+...++. ..--+.+.-|+++.+-...++||.|+ ++..
T Consensus 196 l~~le~~L~~S~a~wkiVvGHh~i~S~~~HG~T----------~eL~~~LlPiL~~n~VdlY~nGHDHcLQhis~----- 260 (336)
T KOG2679|consen 196 LSWLEVALKASRAKWKIVVGHHPIKSAGHHGPT----------KELEKQLLPILEANGVDLYINGHDHCLQHISS----- 260 (336)
T ss_pred HHHHHHHHHHhhcceEEEecccceehhhccCCh----------HHHHHHHHHHHHhcCCcEEEecchhhhhhccC-----
Confidence 111221 22234456678888877776554431 12244677788899999999999664 3331
Q ss_pred CCCcceeEEEEcCC
Q 008885 219 VDAVHVTRFLGLAP 232 (550)
Q Consensus 219 ~~~~~~TRFI~La~ 232 (550)
....+.|+--|.
T Consensus 261 --~e~~iqf~tSGa 272 (336)
T KOG2679|consen 261 --PESGIQFVTSGA 272 (336)
T ss_pred --CCCCeeEEeeCC
Confidence 255688886553
No 122
>KOG0371 consensus Serine/threonine protein phosphatase 2A, catalytic subunit [Signal transduction mechanisms]
Probab=95.23 E-value=0.035 Score=55.17 Aligned_cols=69 Identities=16% Similarity=0.277 Sum_probs=47.0
Q ss_pred EEEEcCCCCChHHHHHHHHHHhhhcCCCcEEEEecCCCCCChhhHHHHHHHhcccCCCCccEEEEecCCCC
Q 008885 6 ILLCGDVLGRLNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSSELLDEFMNYVEGRSEIPIPTYFIGDYGVG 76 (550)
Q Consensus 6 ILv~GDvhG~~~~l~~kv~~l~~k~GpfD~li~~GDff~~~~~~~~~~~~~l~g~~~~p~ptyfv~GNhe~ 76 (550)
+.||||+||+|+.+++.. ++-.. +|----|..||+..-++...+.+.-+++=+.+-|--+-++.||||.
T Consensus 62 vtvcGDvHGqf~dl~ELf-kiGG~-~pdtnylfmGDyvdrGy~SvetVS~lva~Kvry~~rvtilrGNHEs 130 (319)
T KOG0371|consen 62 VTVCGDVHGQFHDLIELF-KIGGL-APDTNYLFMGDYVDRGYYSVETVSLLVALKVRYPDRVTILRGNHES 130 (319)
T ss_pred eEEecCcchhHHHHHHHH-HccCC-CCCcceeeeeeecccccchHHHHHHHHHhhccccceeEEecCchHH
Confidence 789999999999998766 33322 2445677899997654443444444444334455558999999984
No 123
>cd07384 MPP_Cdc1_like Saccharomyces cerevisiae CDC1 and related proteins, metallophosphatase domain. Cdc1 (also known as XlCdc1 in Xenopus laevis) is an endoplasmic reticulum-localized transmembrane lipid phosphatase with a metallophosphatase domain facing the ER lumen. In budding yeast, the gene encoding CDC1 is essential while nonlethal mutations cause defects in Golgi inheritance and actin polarization. Cdc1 mutant cells accumulate an unidentified phospholipid, suggesting that Cdc1 is a lipid phosphatase. Cdc1 mutant cells also have highly elevated intracellular calcium levels suggesting a possible role for Cdc1 in calcium regulation. The 5' flanking region of Cdc1 is a regulatory region with conserved binding site motifs for AP1, AP2, Sp1, NF-1 and CREB. DNA polymerase delta consists of at least four subunits - Pol3, Cdc1, Cdc27, and Cdm1. This group also contains Saccharomyces cerevisiae TED1 (Trafficking of Emp24p/Erv25p-dependent cargo disrupted 1), which acts together wit
Probab=95.05 E-value=0.028 Score=53.32 Aligned_cols=57 Identities=18% Similarity=0.214 Sum_probs=32.9
Q ss_pred HHHHHHHHhhhcCCCcEEEEecCCCCCChh----h----HHHHHHHhcccCC--CCccEEEEecCCCC
Q 008885 19 LFKRVQSVNKSAGPFDAVLCVGQFFPDSSE----L----LDEFMNYVEGRSE--IPIPTYFIGDYGVG 76 (550)
Q Consensus 19 l~~kv~~l~~k~GpfD~li~~GDff~~~~~----~----~~~~~~~l~g~~~--~p~ptyfv~GNhe~ 76 (550)
+.+++..+..+. +.|+||++||+|..... . .+.|..++..... ..+|+|+|+||||.
T Consensus 33 ~~~~~~~~i~~~-~pd~vi~lGDl~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~GNHD~ 99 (171)
T cd07384 33 MRRAFKTALQRL-KPDVVLFLGDLFDGGRIADSEEWEEYVKRFKKIFFLPSNGLEDIPVYYVPGNHDI 99 (171)
T ss_pred HHHHHHHHHHhc-CCCEEEEeccccCCcEeCCHHHHHHHHHHHHHHhcccccccCCceEEEECCcccc
Confidence 334455554444 57999999999864321 1 1122233221110 26899999999973
No 124
>KOG2310 consensus DNA repair exonuclease MRE11 [Replication, recombination and repair]
Probab=94.87 E-value=0.064 Score=58.41 Aligned_cols=75 Identities=20% Similarity=0.291 Sum_probs=50.0
Q ss_pred CCEEEEEcCCCC------------ChHHHHHHHHHHhhhcCCCcEEEEecCCCCCChh-------hHH------------
Q 008885 3 PPRILLCGDVLG------------RLNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSSE-------LLD------------ 51 (550)
Q Consensus 3 ~~KILv~GDvhG------------~~~~l~~kv~~l~~k~GpfD~li~~GDff~~~~~-------~~~------------ 51 (550)
.+||||..|+|- .|..+-+ |-.|...+ ..|+|+.-||+|-.... ..+
T Consensus 13 tirILVaTD~HlGY~EkD~vrg~DSf~tFeE-Il~iA~e~-~VDmiLlGGDLFHeNkPSr~~L~~~i~lLRryClgdkP~ 90 (646)
T KOG2310|consen 13 TIRILVATDNHLGYGEKDAVRGDDSFVTFEE-ILEIAQEN-DVDMILLGGDLFHENKPSRKTLHRCLELLRRYCLGDKPV 90 (646)
T ss_pred ceEEEEeecCccccccCCcccccchHHHHHH-HHHHHHhc-CCcEEEecCcccccCCccHHHHHHHHHHHHHHccCCCce
Confidence 489999999995 3433322 33333333 69999999999975211 111
Q ss_pred -----------------HHHHHhcccCCCCccEEEEecCCCChHH
Q 008885 52 -----------------EFMNYVEGRSEIPIPTYFIGDYGVGAAK 79 (550)
Q Consensus 52 -----------------~~~~~l~g~~~~p~ptyfv~GNhe~~~~ 79 (550)
....|.+....+.+|++=|.|||+++..
T Consensus 91 ~le~lSD~s~~f~~~~f~~VNY~DpNlNIsIPVFsIHGNHDDpSG 135 (646)
T KOG2310|consen 91 QLEILSDQSVNFGNSVFGNVNYEDPNLNISIPVFSIHGNHDDPSG 135 (646)
T ss_pred eeEEecccceeccccccceecccCCCcceeeeeEEeecCCCCCcc
Confidence 1123555667788999999999999853
No 125
>PF02744 GalP_UDP_tr_C: Galactose-1-phosphate uridyl transferase, C-terminal domain; InterPro: IPR005850 Galactose-1-phosphate uridyl transferase catalyses the conversion of UDP-glucose and alpha-D-galactose 1-phosphate to alpha-D-glucose 1-phosphate and UDP-galactose during galactose metabolism. The enzyme is present in prokaryotes and eukaryotes. Defects in GalT in humans is the cause of galactosemia, an inherited disorder of galactose metabolism that leads to jaundice, cataracts and mental retardation. This domain describes the C-terminal of Galactose-1-phosphate uridyl transferase. SCOP reports fold duplication of the C-terminal with the N-terminal domain. Both are involved in Zn and Fe binding; GO: 0008108 UDP-glucose:hexose-1-phosphate uridylyltransferase activity, 0006012 galactose metabolic process; PDB: 1GUP_C 1HXP_A 1HXQ_A 1GUQ_C.
Probab=94.69 E-value=0.056 Score=51.12 Aligned_cols=72 Identities=22% Similarity=0.356 Sum_probs=45.5
Q ss_pred CCCcccCCC--CCCCcceEEEECCEEEEEecCCCCCCCeEEEEeccccCCCCCCCHHHHHHHHHHHHHHHHHHh
Q 008885 389 KECWFCLSS--PSVESHLIVSVGEYYYCALPKGPLVEDHVLVIPVEHVPNTISTSPECEKELGRFQNSLMMYYK 460 (550)
Q Consensus 389 ~~C~FC~~~--~~~~~hliis~g~~~yl~l~kgpl~~gH~lIiP~~H~~s~~~l~~~~~~Ei~~~~~~L~~~~~ 460 (550)
+.|.||..- ...+.-.||..+++.-++.|-..--|--++|+|.+|..++.++++++..++-...+.+.+.+.
T Consensus 13 Gs~L~~D~~~~E~~~~~Riv~en~~f~a~vP~~a~wP~ev~ilpkrh~~~l~~l~~~E~~dlA~~l~~i~~r~d 86 (166)
T PF02744_consen 13 GSCLFCDHLQMELAEGERIVYENEHFVAFVPFAARWPFEVWILPKRHVPSLADLTDEERDDLAAILKPILRRYD 86 (166)
T ss_dssp SS-HHHHHHHHHHHH-TTEEEE-SSEEEE--TT--STT-EEEEESS--SSGGG--HHHHHHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHhhcCCCEEEEECCceEEEEECcccCCcEEEEecCCChhhHHHhhhHHHhhHHHHHHHHHHHhc
Confidence 479999753 233445788888887677776667788999999999999999999988887776666665554
No 126
>PRK09418 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=94.58 E-value=2 Score=50.19 Aligned_cols=41 Identities=20% Similarity=0.135 Sum_probs=27.7
Q ss_pred CCEEEEEcCCCCChHH----------------HHHHHHHHhhhcCCCcEEEEecCCCC
Q 008885 3 PPRILLCGDVLGRLNQ----------------LFKRVQSVNKSAGPFDAVLCVGQFFP 44 (550)
Q Consensus 3 ~~KILv~GDvhG~~~~----------------l~~kv~~l~~k~GpfD~li~~GDff~ 44 (550)
.++||.+.|+||++.. +...|+++.+++ +--++|-.||++.
T Consensus 39 ~L~IL~TnDiHg~l~~~dy~~~~~~~~~Glar~AtlI~~~R~e~-~ntlllD~GD~iq 95 (780)
T PRK09418 39 NLRILETSDIHVNLMNYDYYQTKTDNKVGLVQTATLVNKAREEA-KNSVLFDDGDALQ 95 (780)
T ss_pred EEEEEEEeecCCCCcCcCccccCCcCCCCHHHHHHHHHHHHHhC-CCeEEEECCCCCC
Confidence 3689999999998632 223344443333 4579999999864
No 127
>PRK09419 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=94.16 E-value=2.5 Score=51.92 Aligned_cols=204 Identities=13% Similarity=0.075 Sum_probs=101.5
Q ss_pred CEEEEEcCCCCChH----------------HHHHHHHHHhhhcCCCcEEEEecCCCCCChhh-------------HHHHH
Q 008885 4 PRILLCGDVLGRLN----------------QLFKRVQSVNKSAGPFDAVLCVGQFFPDSSEL-------------LDEFM 54 (550)
Q Consensus 4 ~KILv~GDvhG~~~----------------~l~~kv~~l~~k~GpfD~li~~GDff~~~~~~-------------~~~~~ 54 (550)
++||.++|+||++. ++...++++.+++ +--++|-.||++....-. ..-..
T Consensus 42 l~il~tnD~Hg~l~~~~y~~~~~~~~~Glar~at~i~~~r~~~-~n~llld~GD~~qGs~l~~~~~~~~~~~~~~~~~~i 120 (1163)
T PRK09419 42 IQILATTDLHGNFMDYDYASDKETTGFGLAQTATLIKKARKEN-PNTLLVDNGDLIQGNPLGEYAVKDNILFKNKTHPMI 120 (1163)
T ss_pred EEEEEEecccccccccccccCCCCCCcCHHHHHHHHHHHHHhC-CCeEEEeCCCccCCChhhhHHhhhccccCCCcCHHH
Confidence 68999999999863 3344444444444 334555599997532100 00011
Q ss_pred HHhcccCCCCccEEEEecCCCChHH--HHHHhhccccccCcccCCceecCcEEEcC------CCCeEEE---------cC
Q 008885 55 NYVEGRSEIPIPTYFIGDYGVGAAK--VLLAASKNSANQGFKMDGFKVTDNLFWLK------GSGNFTL---------HG 117 (550)
Q Consensus 55 ~~l~g~~~~p~ptyfv~GNhe~~~~--~l~~l~~~~~~~~~~~~g~ei~~Nl~~Lg------~~gv~~i---------~G 117 (550)
+.+ ..+.+ -+++.||||.... .+..+-.. ..-..||.|++.-. ..-|++. +|
T Consensus 121 ~~m---N~lgy-Da~~lGNHEFd~G~~~L~~~~~~-------a~fp~l~aNv~~~~~~~~~~py~I~~~~~~~~~g~~~g 189 (1163)
T PRK09419 121 KAM---NALGY-DAGTLGNHEFNYGLDFLDGTIKG-------ANFPVLNANVKYKNGKNVYTPYKIKEKTVTDENGKKQG 189 (1163)
T ss_pred HHH---hhcCc-cEEeecccccccCHHHHHHHHhc-------CCCCEEEeeeecCCCCcccCCEEEEEEEeeccCCCCCC
Confidence 111 11222 2677999996522 23222111 12246888885432 2234556 89
Q ss_pred eEEEEEeCccCCCCCCC--------CCCCHHHHHHHHHhhc--CCCCcc--EEEeCCCCccccccccccccccccCCCCC
Q 008885 118 LSVAYLSGRQSSEGQQF--------GTYSQDDVDALRALAE--EPGIVD--LFLTNEWPSGVTNKAAASDMLVGISDSSN 185 (550)
Q Consensus 118 lrIa~lgG~~~~~~~~~--------~~~te~di~~L~~l~~--~~~~vD--ILLTh~wP~gi~~~~~~~~~~~~~~~~~~ 185 (550)
+||+.+|=..+.- ..| ..|+ +.++++++... ...++| |+|+|.--..- . ...
T Consensus 190 vkIgiiG~~~p~~-~~~~~~~~~g~~~~~-d~v~~~~~~v~~lk~~gaDvII~l~H~G~~~~--~------------~~~ 253 (1163)
T PRK09419 190 VKVGYIGFVPPQI-MTWDKKNLKGKVEVK-NIVEEANKTIPEMKKGGADVIVALAHSGIESE--Y------------QSS 253 (1163)
T ss_pred eEEEEEecCCcch-hhcchhhccCcEEEC-CHHHHHHHHHHHHHhcCCCEEEEEeccCcCCC--C------------CCC
Confidence 9999998753211 011 1121 12333332110 023566 47788542210 0 011
Q ss_pred C-cHHHHHHHHHh-CCCEEEEccCCCccccccccCC-------CCcceeEEEEcCCCCC
Q 008885 186 T-DSTVSELVAEI-KPRYHIAGSKGVFYAREPYSNV-------DAVHVTRFLGLAPVGN 235 (550)
Q Consensus 186 G-s~~i~~l~~~l-kPRYhf~Gh~~~f~er~Py~~~-------~~~~~TRFI~La~~g~ 235 (550)
| ...+.+|++++ .-...+.||.|..+....|... .....|-.+-.|.+|.
T Consensus 254 ~~en~~~~la~~~~gID~Il~GHsH~~~~~~~~~~~~~~~~~~~~i~g~~ivqag~~g~ 312 (1163)
T PRK09419 254 GAEDSVYDLAEKTKGIDAIVAGHQHGLFPGADYKGVPQFDNAKGTINGIPVVMPKSWGK 312 (1163)
T ss_pred CcchHHHHHHHhCCCCcEEEeCCCcccccCcccccccccccccceECCEEEEccChhhc
Confidence 2 22445666554 4678999999987763333211 1123455666666654
No 128
>KOG1378 consensus Purple acid phosphatase [Carbohydrate transport and metabolism]
Probab=94.07 E-value=1.1 Score=48.63 Aligned_cols=189 Identities=18% Similarity=0.087 Sum_probs=91.5
Q ss_pred CCEEEEEcCCCCChHHHHHHHHHHhhhcCCCcEEEEecCCC-CCChh--hHHHHHHHhcccCCCCccEEEEecCCCChHH
Q 008885 3 PPRILLCGDVLGRLNQLFKRVQSVNKSAGPFDAVLCVGQFF-PDSSE--LLDEFMNYVEGRSEIPIPTYFIGDYGVGAAK 79 (550)
Q Consensus 3 ~~KILv~GDvhG~~~~l~~kv~~l~~k~GpfD~li~~GDff-~~~~~--~~~~~~~~l~g~~~~p~ptyfv~GNhe~~~~ 79 (550)
+.++.++||.--.... .....+...+.++|+||.+|||- ..... .-++|...+.- ...-+|..++.||||....
T Consensus 147 ~~~~~i~GDlG~~~~~--~s~~~~~~~~~k~d~vlhiGDlsYa~~~~n~~wD~f~r~vEp-~As~vPymv~~GNHE~d~~ 223 (452)
T KOG1378|consen 147 PTRAAIFGDMGCTEPY--TSTLRNQEENLKPDAVLHIGDLSYAMGYSNWQWDEFGRQVEP-IASYVPYMVCSGNHEIDWP 223 (452)
T ss_pred ceeEEEEccccccccc--cchHhHHhcccCCcEEEEecchhhcCCCCccchHHHHhhhhh-hhccCceEEecccccccCC
Confidence 3578889986432211 01122233444699999999993 22211 22334444322 3355899999999996432
Q ss_pred H---HHHhhccccccCcccCCceecCcEEEcCCCCeEEEcCeEEEEEeCccCCCCCCCCCCCHHHHHHHHHhhcCC---C
Q 008885 80 V---LLAASKNSANQGFKMDGFKVTDNLFWLKGSGNFTLHGLSVAYLSGRQSSEGQQFGTYSQDDVDALRALAEEP---G 153 (550)
Q Consensus 80 ~---l~~l~~~~~~~~~~~~g~ei~~Nl~~Lg~~gv~~i~GlrIa~lgG~~~~~~~~~~~~te~di~~L~~l~~~~---~ 153 (550)
- +..+... + ..+..+.+--.|++|- +..++..|.+||=-... .....++...-.-+.|++.+ .
T Consensus 224 ~~~~F~~y~~R-f--~mP~~~s~s~~~l~YS-----fd~G~vhfv~lsse~~~---~~~~~~~QY~WL~~dL~~v~r~~t 292 (452)
T KOG1378|consen 224 PQPCFVPYSAR-F--NMPGNSSESDSNLYYS-----FDVGGVHFVVLSTETYY---NFLKGTAQYQWLERDLASVDRKKT 292 (452)
T ss_pred Cccccccccee-e--ccCCCcCCCCCceeEE-----EeeccEEEEEEeccccc---cccccchHHHHHHHHHHHhcccCC
Confidence 0 1111000 0 0000001111245542 35677888887642111 11122332211111122222 3
Q ss_pred CccEEEeCCCCccccccccccccccccCCCCCCc--HHHHHHHHHhCCCEEEEccCCCcccc
Q 008885 154 IVDLFLTNEWPSGVTNKAAASDMLVGISDSSNTD--STVSELVAEIKPRYHIAGSKGVFYAR 213 (550)
Q Consensus 154 ~vDILLTh~wP~gi~~~~~~~~~~~~~~~~~~Gs--~~i~~l~~~lkPRYhf~Gh~~~f~er 213 (550)
+==|++-|.|=..-..... ..++ ...+ ..+.+|.-+.+-...|+||.| -|||
T Consensus 293 PWlIv~~HrP~Y~S~~~~~---~reG----~~~~~~~~LE~l~~~~~VDvvf~GHvH-~YER 346 (452)
T KOG1378|consen 293 PWLIVQGHRPMYCSSNDAH---YREG----EFESMREGLEPLFVKYKVDVVFWGHVH-RYER 346 (452)
T ss_pred CeEEEEecccceecCCchh---hccC----cchhhHHHHHHHHHHhceeEEEeccce-ehhc
Confidence 4456666654333221000 0111 1112 379999999999999999987 5677
No 129
>COG4186 Predicted phosphoesterase or phosphohydrolase [General function prediction only]
Probab=93.86 E-value=0.19 Score=46.60 Aligned_cols=70 Identities=11% Similarity=0.127 Sum_probs=45.8
Q ss_pred CCCCEEEEEcCCCC------------ChHHHHH-HHHHHhhhcCCCcEEEEecCCCCCCh--hhHHHHHHHhcccCCCCc
Q 008885 1 MSPPRILLCGDVLG------------RLNQLFK-RVQSVNKSAGPFDAVLCVGQFFPDSS--ELLDEFMNYVEGRSEIPI 65 (550)
Q Consensus 1 M~~~KILv~GDvhG------------~~~~l~~-kv~~l~~k~GpfD~li~~GDff~~~~--~~~~~~~~~l~g~~~~p~ 65 (550)
|+..+|+++||+|= +++..-+ .+..+++--+|=|.|-++|||-.... .+...+.+.|.|
T Consensus 1 ~sm~mmyfisDtHfgh~nvi~~~pfsn~~ehd~vil~N~nntv~p~D~lwhLGDl~~~~n~~~~a~~IlerLnG------ 74 (186)
T COG4186 1 ASMTMMYFISDTHFGHKNVISMRPFSNPDEHDEVILSNWNNTVGPDDVLWHLGDLSSGANRERAAGLILERLNG------ 74 (186)
T ss_pred CceeEEEEecccccCCcceeecCCCCCHHHHhHHHHHhHHhcCCccceEEEecccccccchhhHHHHHHHHcCC------
Confidence 55558999999994 2222211 25556666678899999999955322 333345555544
Q ss_pred cEEEEecCCCC
Q 008885 66 PTYFIGDYGVG 76 (550)
Q Consensus 66 ptyfv~GNhe~ 76 (550)
-..+|+|||+-
T Consensus 75 rkhlv~GNhDk 85 (186)
T COG4186 75 RKHLVPGNHDK 85 (186)
T ss_pred cEEEeeCCCCC
Confidence 45899999973
No 130
>KOG0373 consensus Serine/threonine specific protein phosphatase involved in cell cycle control, PP2A-related [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=93.68 E-value=0.15 Score=49.64 Aligned_cols=68 Identities=18% Similarity=0.371 Sum_probs=48.7
Q ss_pred EEEEEcCCCCChHHHHHHHHHHhhhcC--CCcEEEEecCCCCCChhhHHHHHHHhcccCCCCccEEEEecCCCC
Q 008885 5 RILLCGDVLGRLNQLFKRVQSVNKSAG--PFDAVLCVGQFFPDSSELLDEFMNYVEGRSEIPIPTYFIGDYGVG 76 (550)
Q Consensus 5 KILv~GDvhG~~~~l~~kv~~l~~k~G--pfD~li~~GDff~~~~~~~~~~~~~l~g~~~~p~ptyfv~GNhe~ 76 (550)
-|-||||+||+|-.|.+..+. .| |----|..|||..-++-..+.|.-++.=+.+-|-.+-.+-||||.
T Consensus 47 PVTvCGDIHGQFyDL~eLFrt----gG~vP~tnYiFmGDfVDRGyySLEtfT~l~~LkaryP~~ITLlRGNHEs 116 (306)
T KOG0373|consen 47 PVTVCGDIHGQFYDLLELFRT----GGQVPDTNYIFMGDFVDRGYYSLETFTLLLLLKARYPAKITLLRGNHES 116 (306)
T ss_pred CeeEeeccchhHHHHHHHHHh----cCCCCCcceEEeccccccccccHHHHHHHHHHhhcCCceeEEeeccchh
Confidence 378999999999887665543 23 434567899997765555666665554346667778899999984
No 131
>KOG0372 consensus Serine/threonine specific protein phosphatase involved in glycogen accumulation, PP2A-related [Carbohydrate transport and metabolism; Signal transduction mechanisms]
Probab=93.44 E-value=0.17 Score=50.20 Aligned_cols=67 Identities=18% Similarity=0.364 Sum_probs=46.4
Q ss_pred EEEEcCCCCChHHHHHHHHHHhhhcC--CCcEEEEecCCCCCChhhHHHHHHHhcccCCCCccEEEEecCCCC
Q 008885 6 ILLCGDVLGRLNQLFKRVQSVNKSAG--PFDAVLCVGQFFPDSSELLDEFMNYVEGRSEIPIPTYFIGDYGVG 76 (550)
Q Consensus 6 ILv~GDvhG~~~~l~~kv~~l~~k~G--pfD~li~~GDff~~~~~~~~~~~~~l~g~~~~p~ptyfv~GNhe~ 76 (550)
|-||||+||+|..+.+..+. .| |--=-|.+||+..-+....+.+.-++.=+..-|--+-.+-||||.
T Consensus 45 vtvcGDIHGQf~Dllelf~i----gG~~~~t~YLFLGDyVDRG~~SvEt~lLLl~lK~rYP~ritLiRGNHEs 113 (303)
T KOG0372|consen 45 VTVCGDIHGQFYDLLELFRI----GGDVPETNYLFLGDYVDRGYYSVETFLLLLALKVRYPDRITLIRGNHES 113 (303)
T ss_pred cEEeecccchHHHHHHHHHh----CCCCCCCceEeecchhccccchHHHHHHHHHHhhcCcceeEEeeccchh
Confidence 78999999999998765432 33 334568899997655444555555544335556668999999985
No 132
>COG2908 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.37 E-value=0.34 Score=48.11 Aligned_cols=79 Identities=14% Similarity=0.105 Sum_probs=47.5
Q ss_pred CCcEEEEecCCCCC----C---hhhHHHHHHHhcccCCCCccEEEEecCCCChHHHHHHhhccccccCcccCCceecCcE
Q 008885 32 PFDAVLCVGQFFPD----S---SELLDEFMNYVEGRSEIPIPTYFIGDYGVGAAKVLLAASKNSANQGFKMDGFKVTDNL 104 (550)
Q Consensus 32 pfD~li~~GDff~~----~---~~~~~~~~~~l~g~~~~p~ptyfv~GNhe~~~~~l~~l~~~~~~~~~~~~g~ei~~Nl 104 (550)
..|.|+++||+|.. + +...+...+++. ...-+.++||++|||+ .++...... -.-++
T Consensus 29 ~ad~lyilGDifd~w~g~~~~~~~~~~V~~~l~~-~a~~G~~v~~i~GN~D---fll~~~f~~------------~~g~~ 92 (237)
T COG2908 29 QADALYILGDIFDGWIGDDEPPQLHRQVAQKLLR-LARKGTRVYYIHGNHD---FLLGKRFAQ------------EAGGM 92 (237)
T ss_pred cCcEEEEechhhhhhhcCCcccHHHHHHHHHHHH-HHhcCCeEEEecCchH---HHHHHHHHh------------hcCce
Confidence 45999999999742 1 111122222221 2456789999999996 234332210 02235
Q ss_pred EEcCCCCeEEEcCeEEEEEeCc
Q 008885 105 FWLKGSGNFTLHGLSVAYLSGR 126 (550)
Q Consensus 105 ~~Lg~~gv~~i~GlrIa~lgG~ 126 (550)
..+.+.-+.+..|.++.-+=|-
T Consensus 93 ~l~~~~~~~~l~g~~~Ll~HGD 114 (237)
T COG2908 93 TLLPDPIVLDLYGKRILLAHGD 114 (237)
T ss_pred EEcCcceeeeecCcEEEEEeCC
Confidence 5666656667889999888883
No 133
>KOG1595 consensus CCCH-type Zn-finger protein [General function prediction only]
Probab=93.27 E-value=0.15 Score=55.65 Aligned_cols=103 Identities=22% Similarity=0.460 Sum_probs=65.8
Q ss_pred CCCCCcccceeEEEeccCCCCCCchhcccCCCCCCCCCCCccccCCCCcccccCCCCCCCCCCcccccccccccccCCCC
Q 008885 231 APVGNKEKQKFIHALSPTPAATMSAADISMKTPNTTLSPYTFLDQGSHSKEAAKRPSDSVSDSQYWRYDVSQKRQKHGGG 310 (550)
Q Consensus 231 a~~g~~~K~Kw~yAf~i~p~~~~~~~~l~~~p~~~T~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (550)
|.|+.+.- -||+|.|.|=+.- .=-+=|+|||...- +..++|.+ ..|. |.
T Consensus 187 ~~ys~DeF--rMy~fKir~C~R~-------~shDwteCPf~Hpg-----EkARRRDP-----Rkyh-Ys----------- 235 (528)
T KOG1595|consen 187 GIYSSDEF--RMYSFKIRRCSRP-------RSHDWTECPFAHPG-----EKARRRDP-----RKYH-YS----------- 235 (528)
T ss_pred ccccccce--EEEeeeecccCCc-------cCCCcccCCccCCC-----cccccCCc-----cccc-cc-----------
Confidence 77777554 6999999987642 33588999997521 11122211 1110 10
Q ss_pred CCCCcceeeeccCCCCCCCcccccCCc----hhhhhhccccchhhhcccccCCCCCccccCCcCC
Q 008885 311 DGDKMCFKFIYSGSCPRGEKCNFRHDT----DAREQCLRGVCLDFIIKGKCEKGPECSYKHSLQN 371 (550)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 371 (550)
.-+|=.|+. |.|.+|+.|+|||-- .+.+.|-.+.|-| .|.|.. |=|.|.|..+.
T Consensus 236 --~tpCPefrk-G~C~rGD~CEyaHgvfEcwLHPa~YRT~~CkD---g~~C~R-rvCfFAH~~eq 293 (528)
T KOG1595|consen 236 --STPCPEFRK-GSCERGDSCEYAHGVFECWLHPARYRTRKCKD---GGYCPR-RVCFFAHSPEQ 293 (528)
T ss_pred --CccCccccc-CCCCCCCccccccceehhhcCHHHhccccccC---CCCCcc-ceEeeecChHH
Confidence 014555554 789999999999974 4668888888844 466665 66888888664
No 134
>COG1408 Predicted phosphohydrolases [General function prediction only]
Probab=93.16 E-value=0.22 Score=51.24 Aligned_cols=72 Identities=8% Similarity=0.135 Sum_probs=47.4
Q ss_pred CCEEEEEcCCCCChHH--HHHHHHHHhhhcCCCcEEEEecCCCCC-ChhhHHHHHHHhcccCCCCccEEEEecCCCCh
Q 008885 3 PPRILLCGDVLGRLNQ--LFKRVQSVNKSAGPFDAVLCVGQFFPD-SSELLDEFMNYVEGRSEIPIPTYFIGDYGVGA 77 (550)
Q Consensus 3 ~~KILv~GDvhG~~~~--l~~kv~~l~~k~GpfD~li~~GDff~~-~~~~~~~~~~~l~g~~~~p~ptyfv~GNhe~~ 77 (550)
..||+.++|.|-..-. ..+.+.++-... | |+|+..||++.- .......+...+.. .+.+.++|+|.|||+-.
T Consensus 44 ~~~iv~lSDlH~~~~~~~~~~~~~~i~~~~-~-DlivltGD~~~~~~~~~~~~~~~~L~~-L~~~~gv~av~GNHd~~ 118 (284)
T COG1408 44 GLKIVQLSDLHSLPFREEKLALLIAIANEL-P-DLIVLTGDYVDGDRPPGVAALALFLAK-LKAPLGVFAVLGNHDYG 118 (284)
T ss_pred CeEEEEeehhhhchhhHHHHHHHHHHHhcC-C-CEEEEEeeeecCCCCCCHHHHHHHHHh-hhccCCEEEEecccccc
Confidence 3589999999986433 222233333333 3 999999999772 33334445555543 45788999999999743
No 135
>COG1407 Predicted ICC-like phosphoesterases [General function prediction only]
Probab=92.08 E-value=0.42 Score=47.53 Aligned_cols=67 Identities=18% Similarity=0.257 Sum_probs=44.1
Q ss_pred CEEEEEcCCCCChHHHH----------------HHHHHHhhhcCCCcEEEEecCCCCC---Ch----hhHHHHHHHhccc
Q 008885 4 PRILLCGDVLGRLNQLF----------------KRVQSVNKSAGPFDAVLCVGQFFPD---SS----ELLDEFMNYVEGR 60 (550)
Q Consensus 4 ~KILv~GDvhG~~~~l~----------------~kv~~l~~k~GpfD~li~~GDff~~---~~----~~~~~~~~~l~g~ 60 (550)
-+.||++|+|=-++..+ +++.++-.+.+ .+.||++||++-+ .. .+...|.+++.+
T Consensus 20 ~~~lVvADlHlG~e~~~~r~Gi~lP~~~~~~~~~~l~~ii~~~~-p~~lIilGD~KH~~~~~~~~e~~~~~~f~~~~~~- 97 (235)
T COG1407 20 GRTLVVADLHLGYEESLARRGINLPRYQTDRILKRLDRIIERYG-PKRLIILGDLKHEFGKSLRQEKEEVREFLELLDE- 97 (235)
T ss_pred CcEEEEEecccchhHHHHhcCcccCchhHHHHHHHHHHHHHhcC-CCEEEEcCccccccCccccccHHHHHHHHHHhcc-
Confidence 36899999996554444 55555555664 6999999999543 11 123345555432
Q ss_pred CCCCccEEEEecCCCC
Q 008885 61 SEIPIPTYFIGDYGVG 76 (550)
Q Consensus 61 ~~~p~ptyfv~GNhe~ 76 (550)
. -+.+|.||||.
T Consensus 98 --~--evi~i~GNHD~ 109 (235)
T COG1407 98 --R--EVIIIRGNHDN 109 (235)
T ss_pred --C--cEEEEeccCCC
Confidence 1 48999999975
No 136
>cd00608 GalT Galactose-1-phosphate uridyl transferase (GalT): This enzyme plays a key role in galactose metabolism by catalysing the transfer of a uridine 5'-phosphoryl group from UDP-galactose 1-phosphate. The structure of E.coli GalT reveals that the enzyme contains two identical subunits. It also demonstrates that the active site is formed by amino acid residues from both subunits of the dimer.
Probab=91.48 E-value=1.3 Score=46.63 Aligned_cols=75 Identities=16% Similarity=0.081 Sum_probs=44.6
Q ss_pred EEEEeccccCCCCCCCHHHHHHHHH-HHHHHHHHHhhcCC-ceEEEeec---CC-CcCeEEEEEeec---CCCch---HH
Q 008885 426 VLVIPVEHVPNTISTSPECEKELGR-FQNSLMMYYKNQGK-EAVFFEWL---SK-RGTHANLQAVPI---PTSKA---AA 493 (550)
Q Consensus 426 ~lIiP~~H~~s~~~l~~~~~~Ei~~-~~~~L~~~~~~~~~-~~v~~E~~---~~-~~~H~hi~~vPv---p~~~~---~~ 493 (550)
++|-.-.|..++.+++.+.+.++.. +++.+.++.+..+. -+.+||+- .+ ...|-|.|++-. |.... +.
T Consensus 96 Vii~sp~H~~~l~~~~~~~i~~v~~~~~~r~~~l~~~~~~~yv~if~N~G~~aGaSl~HpH~Qi~a~~~vp~~~~~e~~~ 175 (329)
T cd00608 96 VICFSPDHNLTLAEMSVAEIREVVEAWAERTRELGKNPRIKYVQIFENKGAEMGASLPHPHGQIWALPFLPPEVARELRN 175 (329)
T ss_pred EEEECCcccCChhhCCHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEeecCcccccCCCCCCeeeeeCCcCChHHHHHHHH
Confidence 5567789999999999887666654 55665555543332 35567721 11 246888887643 33332 34
Q ss_pred HHHHHHH
Q 008885 494 VQDIFNL 500 (550)
Q Consensus 494 ~~~~F~~ 500 (550)
+..||.+
T Consensus 176 ~~~y~~~ 182 (329)
T cd00608 176 QKAYYEK 182 (329)
T ss_pred HHHHHHH
Confidence 5566654
No 137
>cd08164 MPP_Ted1 Saccharomyces cerevisiae Ted1 and related proteins, metallophosphatase domain. Saccharomyces cerevisiae Ted1 (trafficking of Emp24p/Erv25p-dependent cargo disrupted 1) is a metallophosphatase domain-containing protein which acts together with Emp24p and Erv25p in cargo exit from the ER. Ted1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the
Probab=91.30 E-value=0.54 Score=45.51 Aligned_cols=46 Identities=20% Similarity=0.134 Sum_probs=27.6
Q ss_pred CCCcEEEEecCCCCCChhhHHHHHHHhc--------ccC--------------CCCccEEEEecCCCC
Q 008885 31 GPFDAVLCVGQFFPDSSELLDEFMNYVE--------GRS--------------EIPIPTYFIGDYGVG 76 (550)
Q Consensus 31 GpfD~li~~GDff~~~~~~~~~~~~~l~--------g~~--------------~~p~ptyfv~GNhe~ 76 (550)
...|.|+++||+|+..-...++|.+++. ... .-.++++.|+||||-
T Consensus 43 l~Pd~V~fLGDLfd~~w~~D~ef~~~~~RF~~if~~~~~~~~~~~~~~~~~~~~~~i~~i~V~GNHDI 110 (193)
T cd08164 43 LKPDAVVVLGDLFSSQWIDDEEFAKRADRYRRRFFGRNDWQVGNISLAARTFEDGKTPLINIAGNHDV 110 (193)
T ss_pred cCCCEEEEeccccCCCcccHHHHHHHHHHHHHHhcCCcccccccccccccccccCCceEEEECCcccC
Confidence 3579999999999752212223332211 101 014889999999973
No 138
>TIGR03768 RPA4764 metallophosphoesterase, RPA4764 family. This model describes a small collection of probable metallophosphoresterases, related to pfam00149. Members of this protein family usually have a Sec-independent TAT (twin-arginine translocation) signal sequence, N-terminal to the region modeled by this alignment. This model and TIGR03767 divide a narrow clade of pfam00149-related enzymes.
Probab=91.29 E-value=0.44 Score=51.76 Aligned_cols=60 Identities=18% Similarity=0.313 Sum_probs=41.3
Q ss_pred hHHHHHHHHHHhhhcCCCcEEEEecCCCCCCh-hhHHHHHHHhccc-------------------------CCCCccEEE
Q 008885 16 LNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSS-ELLDEFMNYVEGR-------------------------SEIPIPTYF 69 (550)
Q Consensus 16 ~~~l~~kv~~l~~k~GpfD~li~~GDff~~~~-~~~~~~~~~l~g~-------------------------~~~p~ptyf 69 (550)
++.++.+|++|+.+. |||++|.+||-....+ .++.-+.+.|+|+ ....+|-|.
T Consensus 84 ~~AaVqtvNal~~~~-p~df~is~GD~~nn~~~nElrWyidvldG~~I~p~SG~~~~~e~v~~~~p~~a~GL~~~iPWY~ 162 (492)
T TIGR03768 84 LDAAVQTVNDLHKRD-RFDFGISLGDACNSTQYNELRWYIDVLDGKPITPSSGAHAGADTIDYQKPFQAAGLDKSIPWYQ 162 (492)
T ss_pred HHHHHHHHHHhhcCC-CceEEEeccccccchhHHHHHHHHHHhcCCeeccCCCCCCCccCCCCCCcccccccCCCCceEE
Confidence 456666777775544 8999999999976532 3344455666654 112389999
Q ss_pred EecCCCC
Q 008885 70 IGDYGVG 76 (550)
Q Consensus 70 v~GNhe~ 76 (550)
+.|||+.
T Consensus 163 v~GNHD~ 169 (492)
T TIGR03768 163 VLGNHDH 169 (492)
T ss_pred eecCCcc
Confidence 9999974
No 139
>KOG0374 consensus Serine/threonine specific protein phosphatase PP1, catalytic subunit [Signal transduction mechanisms; General function prediction only]
Probab=91.25 E-value=0.25 Score=51.85 Aligned_cols=208 Identities=13% Similarity=0.142 Sum_probs=103.7
Q ss_pred EEEEEcCCCCChHHHHHHHHHHhhhcCCCcEEEEecCCCCCChhhHHHHHHHhcccCCCCccEEEEecCCCChHH-----
Q 008885 5 RILLCGDVLGRLNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSSELLDEFMNYVEGRSEIPIPTYFIGDYGVGAAK----- 79 (550)
Q Consensus 5 KILv~GDvhG~~~~l~~kv~~l~~k~GpfD~li~~GDff~~~~~~~~~~~~~l~g~~~~p~ptyfv~GNhe~~~~----- 79 (550)
-|.++||+||++..|...+......- |-.-.+.+||...-+....+.+.-+++=++..|--++.+-||||...-
T Consensus 60 PV~i~GDiHGq~~DLlrlf~~~g~~p-p~~~ylFLGDYVDRG~~slE~i~LL~a~Ki~yp~~~~lLRGNHE~~~in~~yG 138 (331)
T KOG0374|consen 60 PVKIVGDIHGQFGDLLRLFDLLGSFP-PDQNYVFLGDYVDRGKQSLETICLLFALKIKYPENVFLLRGNHECASINRIYG 138 (331)
T ss_pred CEEEEccCcCCHHHHHHHHHhcCCCC-CcccEEEecccccCCccceEEeehhhhhhhhCCceEEEeccccccccccceee
Confidence 48999999999999876665533111 557788999985433322222222333235667778899999997521
Q ss_pred HHHHhhccccccCcccCCceec-CcE-EEcCCCCeEEEcCeEEEEEeCccCCCCCCCCCCCHHHHHHHHHhhcC-CC--C
Q 008885 80 VLLAASKNSANQGFKMDGFKVT-DNL-FWLKGSGNFTLHGLSVAYLSGRQSSEGQQFGTYSQDDVDALRALAEE-PG--I 154 (550)
Q Consensus 80 ~l~~l~~~~~~~~~~~~g~ei~-~Nl-~~Lg~~gv~~i~GlrIa~lgG~~~~~~~~~~~~te~di~~L~~l~~~-~~--~ 154 (550)
++++... .+ .....|-. .+. .+|.-.. .+++..+..=||..+ .-. +.+++..+..-... .. -
T Consensus 139 FydE~~r-r~----~~~~~w~~F~~~f~~mp~~a--~i~~kI~CmhGGlsp-~l~-----~~~~i~~i~rp~~~~~~gll 205 (331)
T KOG0374|consen 139 FYDECKR-RY----GEIKLWKAFNDAFNCLPLAA--LIDGKILCMHGGLSP-HLK-----SLDQIRAIPRPTDSPDKGLL 205 (331)
T ss_pred eHHHHHH-hc----chHHHHHHHHHHHhhCchhh--eecceEEEecCCCCh-hhc-----ChHHHhhccCCcCCCcccee
Confidence 2222210 00 00000000 001 1111111 134433333344422 111 13444443321000 01 2
Q ss_pred ccEEEeCCCCccccccccccccccccCCCCCCcHHHHHHHHHhCCCEEEEccC--CCccccccccCCCCcceeEEEEcCC
Q 008885 155 VDLFLTNEWPSGVTNKAAASDMLVGISDSSNTDSTVSELVAEIKPRYHIAGSK--GVFYAREPYSNVDAVHVTRFLGLAP 232 (550)
Q Consensus 155 vDILLTh~wP~gi~~~~~~~~~~~~~~~~~~Gs~~i~~l~~~lkPRYhf~Gh~--~~f~er~Py~~~~~~~~TRFI~La~ 232 (550)
.|+|-++.= ..+.....+ ..++. ...|..+++++++++.=...+=+|. ...||. .. +..-+|-|-++.-
T Consensus 206 ~DLlWsdp~-~~~~g~~~n---~Rg~s-~~fg~~~v~~f~~~~~ldlivRaHqvv~dGyef---fa-~r~lvTIFSAP~Y 276 (331)
T KOG0374|consen 206 CDLLWSDPD-DDVPGWEEN---DRGVS-FTFGPAVVEDFCKKLDLDLIVRAHQVVEDGYEF---FA-GRKLVTIFSAPNY 276 (331)
T ss_pred eeeeecCCC-CCCCCcccC---CCcee-eEecHHHHHHHHHHhCcceEEEcCccccccceE---ec-CceEEEEecCchh
Confidence 444422211 111111000 01111 2468899999999999999999993 335552 22 2345999998888
Q ss_pred CCC
Q 008885 233 VGN 235 (550)
Q Consensus 233 ~g~ 235 (550)
+|.
T Consensus 277 cg~ 279 (331)
T KOG0374|consen 277 CGE 279 (331)
T ss_pred ccc
Confidence 876
No 140
>KOG2958 consensus Galactose-1-phosphate uridylyltransferase [Energy production and conversion]
Probab=91.13 E-value=0.39 Score=48.61 Aligned_cols=62 Identities=19% Similarity=0.247 Sum_probs=50.5
Q ss_pred CCCcceEEEECCEEEEEecCCCCCCCeEEEEeccccCCCCCCCHHHHHHHHHHHHHHHHHHh
Q 008885 399 SVESHLIVSVGEYYYCALPKGPLVEDHVLVIPVEHVPNTISTSPECEKELGRFQNSLMMYYK 460 (550)
Q Consensus 399 ~~~~hliis~g~~~yl~l~kgpl~~gH~lIiP~~H~~s~~~l~~~~~~Ei~~~~~~L~~~~~ 460 (550)
..+|+.||-..++..+..|=-.+-|--.||||.+|+.++.++++-+..+|-...+.|...|.
T Consensus 211 ~l~Kervv~enehfivvvPywA~wPfEtllipk~h~~~~~~l~~~~k~dLasiLK~ll~Kyd 272 (354)
T KOG2958|consen 211 ALEKERVVVENEHFIVVVPYWATWPFETLLIPKRHVSRFHELDEVEKVDLASILKLLLIKYD 272 (354)
T ss_pred HhhhceEEeecCceEEEeehhhcCcceeeeechhhhhhhcccchHHHhhHHHHHHHHHHHHH
Confidence 46789999887777777776667788999999999999999999888888777766665544
No 141
>cd07381 MPP_CapA CapA and related proteins, metallophosphatase domain. CapA is one of three membrane-associated enzymes in Bacillus anthracis that is required for synthesis of gamma-polyglutamic acid (PGA), a major component of the bacterial capsule. The YwtB and PgsA proteins of Bacillus subtilis are closely related to CapA and are also included in this alignment model. CapA belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal
Probab=90.41 E-value=20 Score=35.50 Aligned_cols=104 Identities=11% Similarity=0.077 Sum_probs=50.6
Q ss_pred CChHHHHHHHHHHhhhcCCCcEEEEecCC------C-CC-Ch---hhHHHHHHHhcccCCCCccEEEEecCCCChHH---
Q 008885 14 GRLNQLFKRVQSVNKSAGPFDAVLCVGQF------F-PD-SS---ELLDEFMNYVEGRSEIPIPTYFIGDYGVGAAK--- 79 (550)
Q Consensus 14 G~~~~l~~kv~~l~~k~GpfD~li~~GDf------f-~~-~~---~~~~~~~~~l~g~~~~p~ptyfv~GNhe~~~~--- 79 (550)
.+++.+|+.+..+-+. .|++++=-.. . .. .. ....+..+.| ..+++-.+-+++||+.+..
T Consensus 22 ~~~~~~~~~v~~~~~~---~D~~~~NlE~~~~~~~~~~~~~~~~f~~~~~~~~~L---~~~G~d~~tlaNNH~fD~G~~g 95 (239)
T cd07381 22 YDFDPLFEDVKPLLRA---ADLAIGNLETPLTDKGSPAPSKYPHFRAPPEVADAL---KAAGFDVVSLANNHTLDYGEEG 95 (239)
T ss_pred CCchhHHHHHHHHHhc---CCEEEEEeecCccCCCCcCCCCceEecCCHHHHHHH---HHhCCCEEEcccccccccchHH
Confidence 3567788888777654 4777543221 1 00 00 0112233333 4466777777889987532
Q ss_pred HHHHhhccccccCcccCCceecCcEEE--cCCCCeEEEcCeEEEEEeCccC
Q 008885 80 VLLAASKNSANQGFKMDGFKVTDNLFW--LKGSGNFTLHGLSVAYLSGRQS 128 (550)
Q Consensus 80 ~l~~l~~~~~~~~~~~~g~ei~~Nl~~--Lg~~gv~~i~GlrIa~lgG~~~ 128 (550)
+.+.+..-. ..++. .+..|... ..+.-+++++|++|+.+|-...
T Consensus 96 l~~t~~~l~-~~~i~----~~g~~~~~~~~~~~~i~~~~g~kVg~ig~t~~ 141 (239)
T cd07381 96 LLDTLDALD-EAGIA----HAGAGRNLEEARRPAILEVNGIKVAFLAYTYG 141 (239)
T ss_pred HHHHHHHHH-HcCCc----eeECCCCHHHhcCcEEEEECCEEEEEEEEECC
Confidence 222221100 00000 11111110 0122345789999999998654
No 142
>smart00854 PGA_cap Bacterial capsule synthesis protein PGA_cap. This protein is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein.
Probab=89.68 E-value=23 Score=35.15 Aligned_cols=189 Identities=12% Similarity=0.112 Sum_probs=92.9
Q ss_pred EEEEEcCCC-------CChHHHHHHHHHHhhhcCCCcEEEEe------cCC--CCCC-h---hhHHHHHHHhcccCCCCc
Q 008885 5 RILLCGDVL-------GRLNQLFKRVQSVNKSAGPFDAVLCV------GQF--FPDS-S---ELLDEFMNYVEGRSEIPI 65 (550)
Q Consensus 5 KILv~GDvh-------G~~~~l~~kv~~l~~k~GpfD~li~~------GDf--f~~~-~---~~~~~~~~~l~g~~~~p~ 65 (550)
+|+++||+- .+++.+|+.+..+-++ .|++++= ++- .... . ....+..+.| ..+++
T Consensus 1 ~i~~~GDi~~~~~~~~~~~~~~~~~v~~~~~~---aD~~~~NlE~~~~~~~~~~~~~~~~~f~~~~~~~~~l---~~~G~ 74 (239)
T smart00854 1 TLSFVGDVMLGRGVYKADFSPPFAGVKPLLRA---ADLAIGNLETPITGSGSPASGKKYPNFRAPPENAAAL---KAAGF 74 (239)
T ss_pred CEEEEeeecccCcccccCcchHHHHHHHHHhc---CCEeEEEeeccccCCCCCCCCCCceEecCCHHHHHHH---HHhCC
Confidence 478889872 3468888888776553 4766652 111 1100 0 0112333343 45667
Q ss_pred cEEEEecCCCChHH---HHHHhhccccccCcccCCceecCcEEEcC---------CCCeEEEcCeEEEEEeCccCCCC--
Q 008885 66 PTYFIGDYGVGAAK---VLLAASKNSANQGFKMDGFKVTDNLFWLK---------GSGNFTLHGLSVAYLSGRQSSEG-- 131 (550)
Q Consensus 66 ptyfv~GNhe~~~~---~l~~l~~~~~~~~~~~~g~ei~~Nl~~Lg---------~~gv~~i~GlrIa~lgG~~~~~~-- 131 (550)
-...+++||+.+.. +.+.+.... ..|+.++| +.-+++++|++|+.+|-+.....
T Consensus 75 d~~~laNNH~fD~G~~gl~~t~~~l~------------~a~i~~~g~~~~~~~~~~~~i~~~~g~kIg~ig~t~~~~~~~ 142 (239)
T smart00854 75 DVVSLANNHSLDYGEEGLLDTLAALD------------AAGIAHVGAGRNLAEARKPAIVEVKGIKIALLAYTYGTNNGW 142 (239)
T ss_pred CEEEeccCcccccchHHHHHHHHHHH------------HCCCCEeeCCCChHHhhCcEEEEECCEEEEEEEEEcCCCCCc
Confidence 77778889997633 222221100 11222222 12345689999999997644221
Q ss_pred ----CCCC--CC---CHHHHHH-HHHhhcCCCCccEE-EeCCCCccccccccccccccccCCCCCCcHHHHHHHHHh---
Q 008885 132 ----QQFG--TY---SQDDVDA-LRALAEEPGIVDLF-LTNEWPSGVTNKAAASDMLVGISDSSNTDSTVSELVAEI--- 197 (550)
Q Consensus 132 ----~~~~--~~---te~di~~-L~~l~~~~~~vDIL-LTh~wP~gi~~~~~~~~~~~~~~~~~~Gs~~i~~l~~~l--- 197 (550)
...+ .. ..+.+.+ +..+ ..++|++ +...|-..... .-++...++++++
T Consensus 143 ~~~~~~~g~~~~~~~~~~~i~~~i~~l---r~~~D~vIv~~H~G~e~~~---------------~p~~~~~~~A~~l~~~ 204 (239)
T smart00854 143 AASKDRPGVALLPDLDREKILADIARA---RKKADVVIVSLHWGVEYQY---------------EPTDEQRELAHALIDA 204 (239)
T ss_pred ccCCCCCCeeecCcCCHHHHHHHHHHH---hccCCEEEEEecCccccCC---------------CCCHHHHHHHHHHHHc
Confidence 0011 11 1232222 2222 2347764 33345443210 1133334455443
Q ss_pred CCCEEEEccCCCccccccccCCCCcceeEEEEcCCCC
Q 008885 198 KPRYHIAGSKGVFYAREPYSNVDAVHVTRFLGLAPVG 234 (550)
Q Consensus 198 kPRYhf~Gh~~~f~er~Py~~~~~~~~TRFI~La~~g 234 (550)
.-...+.||.|..-.-+=|+ ..--|-+||.+-
T Consensus 205 G~DvIiG~H~H~~~~~e~~~-----~~~I~YslGNfi 236 (239)
T smart00854 205 GADVVIGHHPHVLQPIEIYK-----GKLIAYSLGNFI 236 (239)
T ss_pred CCCEEEcCCCCcCCceEEEC-----CEEEEEcccccc
Confidence 67899999988643322222 234466777663
No 143
>COG4360 APA2 ATP adenylyltransferase (5',5'''-P-1,P-4-tetraphosphate phosphorylase II) [Nucleotide transport and metabolism]
Probab=89.45 E-value=0.54 Score=46.36 Aligned_cols=76 Identities=22% Similarity=0.287 Sum_probs=43.4
Q ss_pred EEEECCEEEE-EecCCCCCCCeEEEEeccccCCCCCCCHHHHHHHHHHHHHHHHHHhhcCCceEEEe---ecCCCcCeEE
Q 008885 405 IVSVGEYYYC-ALPKGPLVEDHVLVIPVEHVPNTISTSPECEKELGRFQNSLMMYYKNQGKEAVFFE---WLSKRGTHAN 480 (550)
Q Consensus 405 iis~g~~~yl-~l~kgpl~~gH~lIiP~~H~~s~~~l~~~~~~Ei~~~~~~L~~~~~~~~~~~v~~E---~~~~~~~H~h 480 (550)
.+.-++..|+ .|+|.|+++-|.|||..+--.--..|+..- |..+..-+-... +.|||. .+.....|-|
T Consensus 86 fvg~~s~th~~llNKF~VVdeHlLiVTrefedQ~s~LTl~D------f~ta~~vL~~ld--glvFYNsGp~aGaSq~HkH 157 (298)
T COG4360 86 FVGDISDTHKLLLNKFPVVDEHLLIVTREFEDQESALTLAD------FTTAYAVLCGLD--GLVFYNSGPIAGASQDHKH 157 (298)
T ss_pred hccCCchhHhhhhhcCCcccceeEEeehhhhhccccCCHHH------HHHHHHHHhccc--ceEEecCCCCcCcCCCccc
Confidence 3333444664 688999999999999875333222233221 111111111123 378888 1222246999
Q ss_pred EEEeecCC
Q 008885 481 LQAVPIPT 488 (550)
Q Consensus 481 i~~vPvp~ 488 (550)
+|+||.|-
T Consensus 158 LQi~pmPf 165 (298)
T COG4360 158 LQIVPMPF 165 (298)
T ss_pred eeEeeccc
Confidence 99999994
No 144
>TIGR01390 CycNucDiestase 2',3'-cyclic-nucleotide 2'-phosphodiesterase. 2',3'-cyclic-nucleotide 2'-phosphodiesterase is a bifunctional enzyme localized to the periplasm of Gram-negative bacteria. 2',3'-cyclic-nucleotide 2'-phosphodiesters are intermediates formed during the hydrolysis of RNA by the ribonuclease I, which is also found to the periplasm, and other enzymes of the RNAse T2 family. Bacteria are unable to transport 2',3'-cyclic-nucleotides into the cytoplasm. 2',3'-cyclic-nucleotide 2'-phosphodiesterase contains 2 active sites which catalyze the reactions that convert the 2',3'-cyclic-nucleotide into a 3'-nucleotide, which is then converted into nucleic acid and phosphate. Both final products can be transported into the cytoplasm. Thus, it has been suggested that 2',3'-cyclic-nucleotide 2'-phosphodiesterase has a 'scavenging' function. Experimental evidence indicates that 2',3'-cyclic-nucleotide 2'-phosphodiesterase enables Yersinia enterocolitica O:8 to grow on 2'3'-cAMP as a
Probab=89.13 E-value=2.8 Score=47.94 Aligned_cols=113 Identities=12% Similarity=-0.097 Sum_probs=61.1
Q ss_pred CCEEEEEcCCCCChHH----------------HHHHHHHHhhhcCCCcEEEEecCCCCCChhhH------------HHHH
Q 008885 3 PPRILLCGDVLGRLNQ----------------LFKRVQSVNKSAGPFDAVLCVGQFFPDSSELL------------DEFM 54 (550)
Q Consensus 3 ~~KILv~GDvhG~~~~----------------l~~kv~~l~~k~GpfD~li~~GDff~~~~~~~------------~~~~ 54 (550)
.++||.+.|+||++.. +...++++.+++ +--++|-.||++....-.. .-..
T Consensus 2 ~l~Il~TnDlH~~l~~~dy~~~~~~~~~Glar~atli~~~R~e~-~n~lllD~GD~~qGsp~~~~~~~~~~~~~~~~p~~ 80 (626)
T TIGR01390 2 DLRIVETTDLHTNLMDYDYYKDKPTDKFGLTRTATLIKQARAEV-KNSVLVDNGDLIQGSPLGDYMAAQGLKAGQMHPVY 80 (626)
T ss_pred eEEEEEEcCCccCccCCcccCCCCCCCcCHHHHHHHHHHHHhhC-CCeEEEECCCcCCCccchhhhhhccccCCCcChHH
Confidence 4689999999999743 333344444333 4469999999865311000 0011
Q ss_pred HHhcccCCCCccEEEEecCCCChHH--HHHHhhccccccCcccCCceecCcEEEcC-------CCCeEEE-----c----
Q 008885 55 NYVEGRSEIPIPTYFIGDYGVGAAK--VLLAASKNSANQGFKMDGFKVTDNLFWLK-------GSGNFTL-----H---- 116 (550)
Q Consensus 55 ~~l~g~~~~p~ptyfv~GNhe~~~~--~l~~l~~~~~~~~~~~~g~ei~~Nl~~Lg-------~~gv~~i-----~---- 116 (550)
+.+ ..+.+ -..+.||||.... .+..+-.. ..-..|+.|++... ..-|++. +
T Consensus 81 ~~m---N~lgy-Da~tlGNHEFd~G~~~L~~~~~~-------a~fP~l~aNv~~~~~~~~~~~py~I~~~~~~~~~G~~~ 149 (626)
T TIGR01390 81 KAM---NLLKY-DVGNLGNHEFNYGLPFLKQAIAA-------AKFPIVNANVVDAGTGQPAFTPYLIQERSVVDTDGKPH 149 (626)
T ss_pred HHH---hhcCc-cEEecccccccccHHHHHHHHHh-------CCCCEEEEEEEeCCCCCcccCCeEEEEEEeeccCCCcc
Confidence 111 12222 2578899996532 23222111 11246888886532 1223333 2
Q ss_pred CeEEEEEeCcc
Q 008885 117 GLSVAYLSGRQ 127 (550)
Q Consensus 117 GlrIa~lgG~~ 127 (550)
|+||+.+|=.-
T Consensus 150 ~~kIGiIG~~~ 160 (626)
T TIGR01390 150 TLKVGYIGFVP 160 (626)
T ss_pred ceEEEEEEecC
Confidence 69999998753
No 145
>PLN02643 ADP-glucose phosphorylase
Probab=88.69 E-value=7.2 Score=41.15 Aligned_cols=74 Identities=11% Similarity=0.135 Sum_probs=43.5
Q ss_pred EEEeccccCCCCCCCHHHHHHHHH-HHHHHHHHHhhcCC-ceEEEeecC---C-CcCeEEEEEeec---CCCch---HHH
Q 008885 427 LVIPVEHVPNTISTSPECEKELGR-FQNSLMMYYKNQGK-EAVFFEWLS---K-RGTHANLQAVPI---PTSKA---AAV 494 (550)
Q Consensus 427 lIiP~~H~~s~~~l~~~~~~Ei~~-~~~~L~~~~~~~~~-~~v~~E~~~---~-~~~H~hi~~vPv---p~~~~---~~~ 494 (550)
+|-.=+|..++.+++.+.+..+.+ +++.+..+.+..+. -+.+||+.. + ...|-|-|++-. |.... +.+
T Consensus 111 ii~sp~H~~~l~~~~~~~i~~v~~~~~~r~~~l~~~~~i~yv~iF~N~G~~aGaSl~HPH~Qi~a~~~vP~~~~~el~~~ 190 (336)
T PLN02643 111 VIETPVHSVQLSDLPARHIGEVLKAYKKRINQLQSDSRFKYVQVFKNHGASAGASMSHSHSQIIALPVVPPSVSARLDGS 190 (336)
T ss_pred EEeCCccCCChHHCCHHHHHHHHHHHHHHHHHHhcCCCceEEEEEeecCccCCcCCCCCceeeEecCcCChHHHHHHHHH
Confidence 444568999999999887666654 55555544443333 355677221 1 245778777644 44443 345
Q ss_pred HHHHHH
Q 008885 495 QDIFNL 500 (550)
Q Consensus 495 ~~~F~~ 500 (550)
+.||++
T Consensus 191 ~~y~~~ 196 (336)
T PLN02643 191 KEYFEK 196 (336)
T ss_pred HHHHHH
Confidence 666655
No 146
>KOG3662 consensus Cell division control protein/predicted DNA repair exonuclease [Replication, recombination and repair]
Probab=88.59 E-value=1.5 Score=47.09 Aligned_cols=75 Identities=21% Similarity=0.212 Sum_probs=44.7
Q ss_pred CCEEEEEcCCC--C---------ChHHHH-----HHHHHHhhhcCCCcEEEEecCCCCCChh-hHHHHHHHhcc-----c
Q 008885 3 PPRILLCGDVL--G---------RLNQLF-----KRVQSVNKSAGPFDAVLCVGQFFPDSSE-LLDEFMNYVEG-----R 60 (550)
Q Consensus 3 ~~KILv~GDvh--G---------~~~~l~-----~kv~~l~~k~GpfD~li~~GDff~~~~~-~~~~~~~~l~g-----~ 60 (550)
..||+.++|.| | .++++. .+.-...-.....|+++++||+|..+.. ..++|.+++.. .
T Consensus 48 ~~ki~~vaDPQilg~~~~~~~~~~Ldk~~~D~~lrr~f~~~~~~lkPdvvffLGDLfDeG~~~~~eEf~~~~~RfkkIf~ 127 (410)
T KOG3662|consen 48 STKILLVADPQILGNWPKKFLVSWLDKYGNDWYLRRSFDMSQWRLKPDVVFFLGDLFDEGQWAGDEEFKKRYERFKKIFG 127 (410)
T ss_pred ceEEEEecCchhcCCCCCccccchHHhhhhHHHHHHHHHHHHhccCCCEEEEeccccccCccCChHHHHHHHHHHHHhhC
Confidence 46899999976 3 222221 1222222233467999999999975321 23344444321 1
Q ss_pred CCCCccEEEEecCCCCh
Q 008885 61 SEIPIPTYFIGDYGVGA 77 (550)
Q Consensus 61 ~~~p~ptyfv~GNhe~~ 77 (550)
.+..+++..++||||--
T Consensus 128 ~k~~~~~~~i~GNhDIG 144 (410)
T KOG3662|consen 128 RKGNIKVIYIAGNHDIG 144 (410)
T ss_pred CCCCCeeEEeCCccccc
Confidence 34578999999999853
No 147
>PRK09420 cpdB bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase periplasmic precursor protein; Reviewed
Probab=88.56 E-value=3.4 Score=47.48 Aligned_cols=112 Identities=11% Similarity=-0.064 Sum_probs=61.3
Q ss_pred CCEEEEEcCCCCChH----------------HHHHHHHHHhhhcCCCcEEEEecCCCCCChhhH------------HHHH
Q 008885 3 PPRILLCGDVLGRLN----------------QLFKRVQSVNKSAGPFDAVLCVGQFFPDSSELL------------DEFM 54 (550)
Q Consensus 3 ~~KILv~GDvhG~~~----------------~l~~kv~~l~~k~GpfD~li~~GDff~~~~~~~------------~~~~ 54 (550)
.++||.+.|+||++. ++-..++++.+++ +--++|-.||++....-.. .-.-
T Consensus 25 ~L~IL~TnDlHg~l~~~dy~~~~~~~~~Glar~atli~~~R~e~-~n~llvD~GD~~qGsp~~~~~~~~~~~~g~~~p~i 103 (649)
T PRK09420 25 DLRIMETTDLHSNMMDFDYYKDKPTEKFGLVRTASLIKAARAEA-KNSVLVDNGDLIQGSPLGDYMAAKGLKAGDVHPVY 103 (649)
T ss_pred eEEEEEEcccccCccCCccccCCcccccCHHHHHHHHHHHHHhC-CCEEEEECCCcCCCchhhhhhhhccccCCCcchHH
Confidence 578999999999863 3333444444443 4469999999965321100 0011
Q ss_pred HHhcccCCCCccEEEEecCCCChH--HHHHHhhccccccCcccCCceecCcEEEcC-------CCCeEEE-----c----
Q 008885 55 NYVEGRSEIPIPTYFIGDYGVGAA--KVLLAASKNSANQGFKMDGFKVTDNLFWLK-------GSGNFTL-----H---- 116 (550)
Q Consensus 55 ~~l~g~~~~p~ptyfv~GNhe~~~--~~l~~l~~~~~~~~~~~~g~ei~~Nl~~Lg-------~~gv~~i-----~---- 116 (550)
+.+ ..+.+ -..+.||||... +.+..+-.. ..-..|+.|++... ..-|++. +
T Consensus 104 ~am---N~lgy-Da~tlGNHEFd~G~~~L~~~~~~-------a~fP~l~ANv~~~~~~~~~~~py~I~e~~v~~~~G~~~ 172 (649)
T PRK09420 104 KAM---NTLDY-DVGNLGNHEFNYGLDYLKKALAG-------AKFPYVNANVIDAKTGKPLFTPYLIKEKEVKDKDGKEH 172 (649)
T ss_pred HHH---HhcCC-cEEeccchhhhcCHHHHHHHHhc-------CCCCEEEEEEEecCCCCcccCCeEEEEEEeeccCCCcc
Confidence 111 11111 367889999653 233332111 12246888887432 1223333 3
Q ss_pred CeEEEEEeCc
Q 008885 117 GLSVAYLSGR 126 (550)
Q Consensus 117 GlrIa~lgG~ 126 (550)
|+||+.+|=.
T Consensus 173 ~vkIGiIGl~ 182 (649)
T PRK09420 173 TIKIGYIGFV 182 (649)
T ss_pred ceEEEEEEec
Confidence 5999999854
No 148
>PRK11907 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=87.81 E-value=3.1 Score=48.89 Aligned_cols=112 Identities=13% Similarity=-0.028 Sum_probs=61.7
Q ss_pred CCEEEEEcCCCCChH----------------HHHHHHHHHhhhcCCCcEEEEecCCCCCChh----h------HH---HH
Q 008885 3 PPRILLCGDVLGRLN----------------QLFKRVQSVNKSAGPFDAVLCVGQFFPDSSE----L------LD---EF 53 (550)
Q Consensus 3 ~~KILv~GDvhG~~~----------------~l~~kv~~l~~k~GpfD~li~~GDff~~~~~----~------~~---~~ 53 (550)
.++||.+.|+||++. ++...++++.+++ +--++|-.||++....- . .. -.
T Consensus 115 ~LtIL~TnDiHg~l~~~dy~~~~~~~~~GlaRlAtlI~~~Rae~-~NtLllD~GD~iQGSpl~~~~a~~~~~~~g~~~P~ 193 (814)
T PRK11907 115 DVRILSTTDLHTNLVNYDYYQDKPSQTLGLAKTAVLIEEAKKEN-PNVVLVDNGDTIQGTPLGTYKAIVDPVEEGEQHPM 193 (814)
T ss_pred EEEEEEEEeecCCcccccccccCccccccHHHHHHHHHHHHHhC-CCEEEEecCCCCCCCcccchhhhccccccCcchHH
Confidence 368999999999864 3333344444443 45699999998642110 0 00 01
Q ss_pred HHHhcccCCCCccEEEEecCCCChH--HHHHHhhccccccCcccCCceecCcEEEcCC-------CCeEEE-----cC--
Q 008885 54 MNYVEGRSEIPIPTYFIGDYGVGAA--KVLLAASKNSANQGFKMDGFKVTDNLFWLKG-------SGNFTL-----HG-- 117 (550)
Q Consensus 54 ~~~l~g~~~~p~ptyfv~GNhe~~~--~~l~~l~~~~~~~~~~~~g~ei~~Nl~~Lg~-------~gv~~i-----~G-- 117 (550)
.+.+ ..+.+ =..+.||||... +.+..+-.. ..-..|+.||+.... .-|++. +|
T Consensus 194 i~am---N~LGy-DA~tLGNHEFDyG~d~L~~~l~~-------a~fPvl~ANV~~~~~~~~~~~PY~I~e~~~~d~~G~~ 262 (814)
T PRK11907 194 YAAL---EALGF-DAGTLGNHEFNYGLDYLEKVIAT-------ANMPIVNANVLDPTTGDFLYTPYTIVTKTFTDTEGKK 262 (814)
T ss_pred HHHH---hccCC-CEEEechhhcccCHHHHHHHHHh-------CCCCEEEeeeeecCCCCccCCCeEEEEEEEecCCCcc
Confidence 2222 22222 267889999653 233332111 112468888875432 223333 55
Q ss_pred --eEEEEEeCc
Q 008885 118 --LSVAYLSGR 126 (550)
Q Consensus 118 --lrIa~lgG~ 126 (550)
+||+.+|=.
T Consensus 263 ~~vKIGiIGlv 273 (814)
T PRK11907 263 VTLNIGITGIV 273 (814)
T ss_pred cceEEEEEEeC
Confidence 999999864
No 149
>COG1692 Calcineurin-like phosphoesterase [General function prediction only]
Probab=84.51 E-value=3.6 Score=41.08 Aligned_cols=64 Identities=19% Similarity=0.242 Sum_probs=43.5
Q ss_pred CEEEEEcCCCCC--hHHHHHHHHHHhhhcCCCcEEEEecCC----CCCChhhHHHHHHHhcccCCCCccEEEEecCCCC
Q 008885 4 PRILLCGDVLGR--LNQLFKRVQSVNKSAGPFDAVLCVGQF----FPDSSELLDEFMNYVEGRSEIPIPTYFIGDYGVG 76 (550)
Q Consensus 4 ~KILv~GDvhG~--~~~l~~kv~~l~~k~GpfD~li~~GDf----f~~~~~~~~~~~~~l~g~~~~p~ptyfv~GNhe~ 76 (550)
||||++||+-|+ .+.+.+.+..+-+|. +.|++|+=|.. |+...+ .+.+++. ..+- +++.|||-=
T Consensus 1 mriLfiGDvvGk~Gr~~v~~~Lp~lk~ky-k~dfvI~N~ENaa~G~Git~k---~y~~l~~----~G~d-viT~GNH~w 70 (266)
T COG1692 1 MRILFIGDVVGKPGRKAVKEHLPQLKSKY-KIDFVIVNGENAAGGFGITEK---IYKELLE----AGAD-VITLGNHTW 70 (266)
T ss_pred CeEEEEecccCcchHHHHHHHhHHHHHhh-cCcEEEEcCccccCCcCCCHH---HHHHHHH----hCCC-EEecccccc
Confidence 799999999997 556777787776666 58999999986 343322 3344432 2222 577888853
No 150
>cd07387 MPP_PolD2_C PolD2 (DNA polymerase delta, subunit 2), C-terminal domain. PolD2 (DNA polymerase delta, subunit 2) is an auxiliary subunit of the eukaryotic DNA polymerase delta (PolD) complex thought to play a regulatory role and to serve as a scaffold for PolD assembly by interacting simultaneously with all of the other three subunits. PolD2 is catalytically inactive and lacks the active site residues required for phosphoesterase activity in other members of this superfamily. PolD2 is also involved in the recruitment of several proteins regulating DNA metabolism, including p21, PDIP1, PDIP38, PDIP46, and WRN. Human PolD consists of four subunits: p125 (PolD1), p50 (PolD2), p66(PolD3), and p12(PolD4). PolD is one of three major replicases in eukaryotes. PolD also plays an essential role in translesion DNA synthesis, homologous recombination, and DNA repair. Within the PolD complex, PolD2 tightly associates with PolD3. PolD2 belongs to the metallophosphatase (MPP) superfamily
Probab=84.14 E-value=5 Score=40.69 Aligned_cols=184 Identities=13% Similarity=0.116 Sum_probs=89.2
Q ss_pred CCcEEEEecCCCCCC---------------------hhhHHHHHHHhcccCCCCccEEEEecCCCChHHHHHH--hhccc
Q 008885 32 PFDAVLCVGQFFPDS---------------------SELLDEFMNYVEGRSEIPIPTYFIGDYGVGAAKVLLA--ASKNS 88 (550)
Q Consensus 32 pfD~li~~GDff~~~---------------------~~~~~~~~~~l~g~~~~p~ptyfv~GNhe~~~~~l~~--l~~~~ 88 (550)
.+.-||++||..... ....+++..||.. ....+|+..+|||||-....+.+ +....
T Consensus 42 ~I~rlIIaGn~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~l~~-l~~~i~V~imPG~~Dp~~~~lPQqplh~~l 120 (257)
T cd07387 42 SIVRLIIAGNSLSKSTQGKDSQTKARYLTKKSSAASVEAVKELDNFLSQ-LASSVPVDLMPGEFDPANHSLPQQPLHRCL 120 (257)
T ss_pred ceEEEEEECCcccccccccchhhhhhccccccchhhHHHHHHHHHHHHh-hhcCCeEEECCCCCCcccccCCCCCCCHHH
Confidence 345699999985521 1123456666654 33468999999999743222211 00000
Q ss_pred cccCcccCCceecCcEEEcCCCCeEEEcCeEEEEEeCccCCCCCCCCCCCHHHHHHHHHhhcCCCCccEEEeCCCCcccc
Q 008885 89 ANQGFKMDGFKVTDNLFWLKGSGNFTLHGLSVAYLSGRQSSEGQQFGTYSQDDVDALRALAEEPGIVDLFLTNEWPSGVT 168 (550)
Q Consensus 89 ~~~~~~~~g~ei~~Nl~~Lg~~gv~~i~GlrIa~lgG~~~~~~~~~~~~te~di~~L~~l~~~~~~vDILLTh~wP~gi~ 168 (550)
|+. +. --.|+..+..-..++++|++|.+.+|..-.+-.....+ ++.++.|+...+ + =|-.|..=
T Consensus 121 ----fp~-s~-~~~~~~~vtNP~~~~i~g~~vLgtsGqni~Di~ky~~~-~~~l~~me~~L~--w------rHlaPTaP- 184 (257)
T cd07387 121 ----FPK-SS-NYSTLNLVTNPYEFSIDGVRVLGTSGQNVDDILKYSSL-ESRLDILERTLK--W------RHIAPTAP- 184 (257)
T ss_pred ----hhc-cc-ccCCcEEeCCCeEEEECCEEEEEECCCCHHHHHHhCCC-CCHHHHHHHHHH--h------cccCCCCC-
Confidence 000 00 01356655554566899999999999643111000011 122333332110 0 12222110
Q ss_pred ccccccccccccCCCCCCcHHHHHHHHHhCCCEEEEccCCCccccccccCCCCcceeEEEEcCCCCCcccceeEEEeccC
Q 008885 169 NKAAASDMLVGISDSSNTDSTVSELVAEIKPRYHIAGSKGVFYAREPYSNVDAVHVTRFLGLAPVGNKEKQKFIHALSPT 248 (550)
Q Consensus 169 ~~~~~~~~~~~~~~~~~Gs~~i~~l~~~lkPRYhf~Gh~~~f~er~Py~~~~~~~~TRFI~La~~g~~~K~Kw~yAf~i~ 248 (550)
|... ..|- . .-+-++-.--|-..|+||.+.|--+. |.+. ....+|.|++..|-. ..-+--+++.
T Consensus 185 DTL~--~yP~------~---~~Dpfvi~~~PhVyf~Gnq~~f~t~~-~~~~-~~~~v~lv~vP~Fs~---t~~~vlvdl~ 248 (257)
T cd07387 185 DTLW--CYPF------T---DRDPFILEECPHVYFAGNQPKFGTKL-VEGE-EGQRVLLVCVPSFSK---TGTAVLVNLR 248 (257)
T ss_pred Cccc--cccC------C---CCCceeecCCCCEEEeCCCcceeeeE-EEcC-CCCeEEEEEeCCcCc---CCEEEEEECC
Confidence 0000 0010 0 00111223359999999987654332 4332 256799999999943 3345555544
No 151
>COG1085 GalT Galactose-1-phosphate uridylyltransferase [Energy production and conversion]
Probab=83.74 E-value=5.6 Score=41.76 Aligned_cols=99 Identities=19% Similarity=0.149 Sum_probs=57.5
Q ss_pred CCCCcccCCCCCCCcceEEEECCEEEEEecCCCCC--------------------CCeEEEE--eccccCCCCCCCHHHH
Q 008885 388 SKECWFCLSSPSVESHLIVSVGEYYYCALPKGPLV--------------------EDHVLVI--PVEHVPNTISTSPECE 445 (550)
Q Consensus 388 ~~~C~FC~~~~~~~~hliis~g~~~yl~l~kgpl~--------------------~gH~lIi--P~~H~~s~~~l~~~~~ 445 (550)
...|.||-.|.... ..--.+.+.|+.=++.|.. -|++.|| .=+|..++.+++.+..
T Consensus 39 ~~~CpfC~gn~~~t--~~~~~~~~~~~~~N~fp~v~~d~p~~~~~~~~~~~~~~~~g~~~VIvesp~H~~~l~~~~~~~~ 116 (338)
T COG1085 39 DPTCPFCPGNERTT--EENPRYWHVRVFPNDFPAVSEDPPDAPGSEDPLFKIQEARGKSRVIVESPDHSKTLPELPVEEI 116 (338)
T ss_pred CCcCCccCCcceec--ccCCCCcceeecCCcchhhcCCCCCCCccccchhcccccCcceEEEEECCcccCccccCCHHHH
Confidence 35799999883221 1111233444443334422 2555444 5589999999998887
Q ss_pred HHHHH-HHHHHHHHHhhcC-CceEEEeecC----CCcCeEEEEEeecCC
Q 008885 446 KELGR-FQNSLMMYYKNQG-KEAVFFEWLS----KRGTHANLQAVPIPT 488 (550)
Q Consensus 446 ~Ei~~-~~~~L~~~~~~~~-~~~v~~E~~~----~~~~H~hi~~vPvp~ 488 (550)
.++.+ ++...+++.+... +-|.+|++-. -...|-|.|++-+|.
T Consensus 117 ~~vv~~~~e~~~~L~~~~~~~yV~iF~N~Gk~~G~S~~HPH~Qi~a~~~ 165 (338)
T COG1085 117 EEVVKLWQERVRELYEREKYKYVQIFENKGKAAGASLPHPHGQIVALPV 165 (338)
T ss_pred HHHHHHHHHHHHHHhhccCcceEEeeeccCcccCccCCCCCcceeeccc
Confidence 77776 4555556666532 3466777211 114688888876554
No 152
>PF04042 DNA_pol_E_B: DNA polymerase alpha/epsilon subunit B; InterPro: IPR007185 DNA polymerase epsilon is essential for cell viability and chromosomal DNA replication in budding yeast. In addition, DNA polymerase epsilon may be involved in DNA repair and cell-cycle checkpoint control. The enzyme consists of at least four subunits in mammalian cells as well as in yeast. The largest subunit of DNA polymerase epsilon is responsible for polymerase activity. In mouse, the DNA polymerase epsilon subunit B is the second largest subunit of the DNA polymerase. A part of the N-terminal was found to be responsible for the interaction with SAP18. Experimental evidence suggests that this subunit may recruit histone deacetylase to the replication fork to modify the chromatin structure [].; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication; PDB: 3E0J_C 3FLO_G.
Probab=82.33 E-value=3.6 Score=39.78 Aligned_cols=114 Identities=12% Similarity=0.190 Sum_probs=53.3
Q ss_pred EEEEcCCCCC-hHHHHHHHHHHhhh---cCCCcEEEEecCCCCCCh------------hh----HHHHHHHhcccCCCCc
Q 008885 6 ILLCGDVLGR-LNQLFKRVQSVNKS---AGPFDAVLCVGQFFPDSS------------EL----LDEFMNYVEGRSEIPI 65 (550)
Q Consensus 6 ILv~GDvhG~-~~~l~~kv~~l~~k---~GpfD~li~~GDff~~~~------------~~----~~~~~~~l~g~~~~p~ 65 (550)
|++++|+|=. =...++.+..+-.. ..+.+++|++|+|..... .. ...+..++.. ....+
T Consensus 1 Iv~~Sg~~~~~~~~~~~~L~~~l~~~~~~~~p~~lIl~G~fi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~ 79 (209)
T PF04042_consen 1 IVFASGPFLDSDNLSLEPLRDLLSGVEDASKPDVLILMGPFIDSPHPYISSGSVPDSYSFEEDFLKELDSFLES-ILPST 79 (209)
T ss_dssp EEEEES--CTTT-HHHHHHHHHHHCCCHCTTECEEEEES-SCBTTSHHHHHT---HHCCHHHHHHHHCHHHHCC-CHCCS
T ss_pred CEEEecCccCCCHhHHHHHHHHHHhccccCCCcEEEEeCCCcCccccccccccccccccccHHHHHHHHHHHhh-ccccc
Confidence 5677777654 22234444444432 236799999999976311 01 1122233321 22347
Q ss_pred cEEEEecCCCChHHHHHHhhccccccCcccC-CceecC--cEEEcCCCCeEEEcCeEEEEEeCc
Q 008885 66 PTYFIGDYGVGAAKVLLAASKNSANQGFKMD-GFKVTD--NLFWLKGSGNFTLHGLSVAYLSGR 126 (550)
Q Consensus 66 ptyfv~GNhe~~~~~l~~l~~~~~~~~~~~~-g~ei~~--Nl~~Lg~~gv~~i~GlrIa~lgG~ 126 (550)
.+++|+|++|.... ..++.... ... -..+.. ++.++..=-.+.++|++|+..+|-
T Consensus 80 ~vvlvPg~~D~~~~--~~lPq~pl----~~~~~~~~~~~~~~~~~sNP~~~~i~~~~i~~~s~d 137 (209)
T PF04042_consen 80 QVVLVPGPNDPTSS--PVLPQPPL----HSKLFPKLKKYSNIHFVSNPCRISINGQEIGVTSGD 137 (209)
T ss_dssp EEEEE--TTCTT-S---SCSB--------TTTTCHHCTTTTEEE--CSEEEEETTEEEEE-SSH
T ss_pred EEEEeCCCcccccc--CCCCCCCC----CHHHHhhhhhcCceEEeCCCeEEEEeCCcEEEECCc
Confidence 89999998875433 11221000 000 001112 277776656678999999998884
No 153
>KOG0375 consensus Serine-threonine phosphatase 2B, catalytic subunit [General function prediction only]
Probab=78.94 E-value=2.5 Score=44.24 Aligned_cols=65 Identities=20% Similarity=0.409 Sum_probs=37.3
Q ss_pred EEEEEcCCCCChHHHHHHHHHHhhhcC-CC-cEEEEecCCCCCChhhHH---HHHHHhcccCCCCccEEEEecCCCC
Q 008885 5 RILLCGDVLGRLNQLFKRVQSVNKSAG-PF-DAVLCVGQFFPDSSELLD---EFMNYVEGRSEIPIPTYFIGDYGVG 76 (550)
Q Consensus 5 KILv~GDvhG~~~~l~~kv~~l~~k~G-pf-D~li~~GDff~~~~~~~~---~~~~~l~g~~~~p~ptyfv~GNhe~ 76 (550)
-|-||||+||+|=.|.+..+ + .| |. ---+.+||...-++...+ -++.+ ++..|...+.+-||||.
T Consensus 89 PiTVCGDIHGQf~DLmKLFE-V---GG~PA~t~YLFLGDYVDRGyFSiECvlYLwsL---Ki~yp~tl~lLRGNHEC 158 (517)
T KOG0375|consen 89 PITVCGDIHGQFFDLMKLFE-V---GGSPANTRYLFLGDYVDRGYFSIECVLYLWSL---KINYPKTLFLLRGNHEC 158 (517)
T ss_pred CeeEecccchHHHHHHHHHH-c---cCCcccceeEeeccccccceeeeehHHHHHHH---hcCCCCeEEEecCCcch
Confidence 38899999998877654332 2 22 21 234678998554332222 22233 13344445667799985
No 154
>PLN03103 GDP-L-galactose-hexose-1-phosphate guanyltransferase; Provisional
Probab=78.81 E-value=4.4 Score=43.47 Aligned_cols=70 Identities=23% Similarity=0.267 Sum_probs=40.0
Q ss_pred CEEEEEecCCCCCCCeEEEEec--cccCCCCCCCHHHHHHHHHHHHHHHHHHhhcC-CceEEEeec-CC-CcCeEEEEEe
Q 008885 410 EYYYCALPKGPLVEDHVLVIPV--EHVPNTISTSPECEKELGRFQNSLMMYYKNQG-KEAVFFEWL-SK-RGTHANLQAV 484 (550)
Q Consensus 410 ~~~yl~l~kgpl~~gH~lIiP~--~H~~s~~~l~~~~~~Ei~~~~~~L~~~~~~~~-~~~v~~E~~-~~-~~~H~hi~~v 484 (550)
+...|+++..||.+||+||||- .|.|-..+ .+.. .-++.-+....+ .-.|+|... .. ...|+|+|..
T Consensus 169 s~~~VlINvsPI~~gH~LlvP~~~~~lPQ~i~--~~~l------~la~~~a~~~~~p~frvgYNSlGA~ASvNHLHFQa~ 240 (403)
T PLN03103 169 SPNVVAINVSPIEYGHVLLVPRVLDCLPQRID--PDSF------LLALYMAAEANNPYFRVGYNSLGAFATINHLHFQAY 240 (403)
T ss_pred CccEEEEeCCCCccCeEEEcCCcccCCCeEec--HHHH------HHHHHHHHhcCCCcEEEEecCCccccCcceeeeeec
Confidence 3336788899999999999965 57665433 2222 112222222222 224677621 12 3569999987
Q ss_pred ecC
Q 008885 485 PIP 487 (550)
Q Consensus 485 Pvp 487 (550)
-++
T Consensus 241 yl~ 243 (403)
T PLN03103 241 YLA 243 (403)
T ss_pred ccC
Confidence 553
No 155
>KOG1432 consensus Predicted DNA repair exonuclease SIA1 [General function prediction only]
Probab=78.68 E-value=6.2 Score=41.33 Aligned_cols=75 Identities=20% Similarity=0.123 Sum_probs=46.4
Q ss_pred CCEEEEEcCCCCChH-----------------H--HHHHHHHHhhhcCCCcEEEEecCC-CCCCh-hhHHHHHHHhcccC
Q 008885 3 PPRILLCGDVLGRLN-----------------Q--LFKRVQSVNKSAGPFDAVLCVGQF-FPDSS-ELLDEFMNYVEGRS 61 (550)
Q Consensus 3 ~~KILv~GDvhG~~~-----------------~--l~~kv~~l~~k~GpfD~li~~GDf-f~~~~-~~~~~~~~~l~g~~ 61 (550)
+.|||.+.|.|=.+. . -..-++++.+.. +.|+|+..||. ++... .+...+.+-++-.+
T Consensus 53 ~fKIlqvaDlH~g~g~~~~c~d~~p~~~~~csD~nTt~F~~rvL~sE-~PDlVVfTGD~i~g~~t~Da~~sl~kAvaP~I 131 (379)
T KOG1432|consen 53 TFKILQVADLHFGFGRETRCRDVLPSEEACCSDLNTTNFVSRVLASE-KPDLVVFTGDNIFGHSTQDAATSLMKAVAPAI 131 (379)
T ss_pred ceEEEEeeccccccCCCccccccCcchhhhhcCccHHHHHHHHHhcc-CCCEEEEeCCcccccccHhHHHHHHHHhhhHh
Confidence 469999999995544 0 011133333333 46999999997 55322 22233444444345
Q ss_pred CCCccEEEEecCCCChH
Q 008885 62 EIPIPTYFIGDYGVGAA 78 (550)
Q Consensus 62 ~~p~ptyfv~GNhe~~~ 78 (550)
.-.+|--.+.|||++..
T Consensus 132 ~~~IPwA~~lGNHDdes 148 (379)
T KOG1432|consen 132 DRKIPWAAVLGNHDDES 148 (379)
T ss_pred hcCCCeEEEeccccccc
Confidence 66799999999999754
No 156
>PF05011 DBR1: Lariat debranching enzyme, C-terminal domain; InterPro: IPR007708 This presumed domain is found at the C terminus of lariat debranching enzyme. This domain is always found in association with a metallo-phosphoesterase domain IPR004843 from INTERPRO. RNA lariat debranching enzyme is capable of digesting a variety of branched nucleic acid substrates and multicopy single-stranded DNAs. The enzyme degrades intron lariat structures during splicing. ; GO: 0016788 hydrolase activity, acting on ester bonds, 0006397 mRNA processing
Probab=77.79 E-value=2.1 Score=39.48 Aligned_cols=30 Identities=20% Similarity=0.442 Sum_probs=26.2
Q ss_pred CcceeEEEEcCCCCCcccceeEEEeccCCCCC
Q 008885 221 AVHVTRFLGLAPVGNKEKQKFIHALSPTPAAT 252 (550)
Q Consensus 221 ~~~~TRFI~La~~g~~~K~Kw~yAf~i~p~~~ 252 (550)
+...|||++|++|+. +++||.-+.|.+...
T Consensus 6 ~~~~TkFLALDKClP--~R~FLqviei~~~~~ 35 (145)
T PF05011_consen 6 TNKTTKFLALDKCLP--RRDFLQVIEIPPDSS 35 (145)
T ss_pred CCCccEEEeccccCC--CCcceEEEEecCCCC
Confidence 567899999999998 788999999987664
No 157
>COG1311 HYS2 Archaeal DNA polymerase II, small subunit/DNA polymerase delta, subunit B [DNA replication, recombination, and repair]
Probab=75.81 E-value=15 Score=40.30 Aligned_cols=208 Identities=15% Similarity=0.203 Sum_probs=105.7
Q ss_pred CCEEEEEcCCCCChHHHH-HHHHHHhh-hcCCC------cEEEEecCCCC---C--Ch----------hhHHHHHHHhcc
Q 008885 3 PPRILLCGDVLGRLNQLF-KRVQSVNK-SAGPF------DAVLCVGQFFP---D--SS----------ELLDEFMNYVEG 59 (550)
Q Consensus 3 ~~KILv~GDvhG~~~~l~-~kv~~l~~-k~Gpf------D~li~~GDff~---~--~~----------~~~~~~~~~l~g 59 (550)
..++++++|+|=--..+. +.....-+ -+|+. ..++|+||... . +. +.-+++.+||.-
T Consensus 225 ~v~v~~isDih~GSk~F~~~~f~~fi~wl~g~~~~a~~vkyliiagd~VDGigiYpgq~~eL~i~di~~qy~~~A~~L~~ 304 (481)
T COG1311 225 RVYVALISDIHRGSKEFLEDEFEKFIDWLNGPGDLASRVKYLIIAGDVVDGIGIYPGQEEELVIADIYEQYEELAEFLDQ 304 (481)
T ss_pred ceEEEEEeeeecccHHHHHHHHHHHHHHhcCCcccccceEEEEEecccccccccccCcccccccccchHHHHHHHHHHhh
Confidence 367999999997222221 11111111 14555 89999999832 1 11 122345666632
Q ss_pred cCCCCccEEEEecCCCChHHHHHHhhccccccCcc--cCCceecCcEEEcCCCCeEEEcCeEEEEEeCccCCCC-CCCCC
Q 008885 60 RSEIPIPTYFIGDYGVGAAKVLLAASKNSANQGFK--MDGFKVTDNLFWLKGSGNFTLHGLSVAYLSGRQSSEG-QQFGT 136 (550)
Q Consensus 60 ~~~~p~ptyfv~GNhe~~~~~l~~l~~~~~~~~~~--~~g~ei~~Nl~~Lg~~gv~~i~GlrIa~lgG~~~~~~-~~~~~ 136 (550)
.--.+.++.+||||+....- ++.. .++ ...-....|+.++..--.+.++|..+-...|....+- ..-..
T Consensus 305 -vp~~I~v~i~PGnhDa~r~a---~PQp----~~~~~~kslf~~~n~~~v~NP~~~~l~G~~vL~~hG~sidDii~~vP~ 376 (481)
T COG1311 305 -VPEHIKVFIMPGNHDAVRQA---LPQP----HFPELIKSLFSLNNLLFVSNPALVSLHGVDVLIYHGRSIDDIIKLVPG 376 (481)
T ss_pred -CCCCceEEEecCCCCccccc---cCCC----CcchhhcccccccceEecCCCcEEEECCEEEEEecCCCHHHHHhhCCC
Confidence 22235689999999853211 1111 000 0111223568777776777899999999888532100 00000
Q ss_pred CCH-H---HHHHHHHhhcCCCCccEEEeCCCCccccccccccccccccCCCCCCcHHHHHHHHHhCCCEEEEccCCCccc
Q 008885 137 YSQ-D---DVDALRALAEEPGIVDLFLTNEWPSGVTNKAAASDMLVGISDSSNTDSTVSELVAEIKPRYHIAGSKGVFYA 212 (550)
Q Consensus 137 ~te-~---di~~L~~l~~~~~~vDILLTh~wP~gi~~~~~~~~~~~~~~~~~~Gs~~i~~l~~~lkPRYhf~Gh~~~f~e 212 (550)
.+. + -++.|.++ =|-.|.-= +..+..| . .-+-++-+--|-+..+||.|.|.-
T Consensus 377 ~~~~~~~~ame~lLk~-----------rHlaPtyg---g~~p~aP---------~-~kD~lVIeevPDv~~~Ghvh~~g~ 432 (481)
T COG1311 377 ADYDSPLKAMEELLKR-----------RHLAPTYG---GTLPIAP---------E-TKDYLVIEEVPDVFHTGHVHKFGT 432 (481)
T ss_pred CCccchHHHHHHHHHh-----------cccCCCCC---Ccccccc---------C-CcCceeeccCCcEEEEccccccce
Confidence 111 1 12222222 12222210 0000001 1 133455666899999999988766
Q ss_pred cccccCCCCcceeEEEEcCCCCCcc-cceeEEEeccCCC
Q 008885 213 REPYSNVDAVHVTRFLGLAPVGNKE-KQKFIHALSPTPA 250 (550)
Q Consensus 213 r~Py~~~~~~~~TRFI~La~~g~~~-K~Kw~yAf~i~p~ 250 (550)
.. | +.-+.||++.+-.-. .|| +.-++.+|.
T Consensus 433 ~~-y------~gv~~vns~T~q~qTefqk-~vni~p~~~ 463 (481)
T COG1311 433 GV-Y------EGVNLVNSGTWQEQTEFQK-MVNINPTPG 463 (481)
T ss_pred eE-E------eccceEEeeeecchhccce-EEEecCccc
Confidence 42 2 236889999886633 444 455554443
No 158
>PRK11720 galactose-1-phosphate uridylyltransferase; Provisional
Probab=75.34 E-value=26 Score=37.14 Aligned_cols=61 Identities=16% Similarity=0.041 Sum_probs=36.8
Q ss_pred EEEEeccccCCCCCCCHHHHHHHH-HHHHHHHHHHhhcCCceEEEeecC----CCcCeEEEEEeecC
Q 008885 426 VLVIPVEHVPNTISTSPECEKELG-RFQNSLMMYYKNQGKEAVFFEWLS----KRGTHANLQAVPIP 487 (550)
Q Consensus 426 ~lIiP~~H~~s~~~l~~~~~~Ei~-~~~~~L~~~~~~~~~~~v~~E~~~----~~~~H~hi~~vPvp 487 (550)
++|-.-+|..++.+++.+.+..+. .+++.+..+.+. =.-+.+||+.. -...|-|-|++-.|
T Consensus 108 Viv~sp~H~~~l~~~~~~~i~~v~~~~~~r~~~l~~~-i~yv~iF~N~G~~~GaSl~HPH~Qi~a~p 173 (346)
T PRK11720 108 VICFSPDHSKTLPELSVAALREVVDTWQEQTAELGKT-YPWVQVFENKGAAMGCSNPHPHGQIWANS 173 (346)
T ss_pred EEEECCCcCCChhHCCHHHHHHHHHHHHHHHHHHHhC-CcEEEEEeecCcccCcCCCCCceeeeeCC
Confidence 445567899999999988666655 355555554443 22355677221 11357777776443
No 159
>PF00642 zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and similar); InterPro: IPR000571 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents C-x8-C-x5-C-x3-H (CCCH) type Zinc finger (Znf) domains. Proteins containing CCCH Znf domains include Znf proteins from eukaryotes involved in cell cycle or growth phase-related regulation, e.g. human TIS11B (butyrate response factor 1), a probable regulatory protein involved in regulating the response to growth factors, and the mouse TTP growth factor-inducible nuclear protein, which has the same function. The mouse TTP protein is induced by growth factors. Another protein containing this domain is the human splicing factor U2AF 35kDa subunit, which plays a critical role in both constitutive and enhancer-dependent splicing by mediating essential protein-protein interactions and protein-RNA interactions required for 3' splice site selection. It has been shown that different CCCH-type Znf proteins interact with the 3'-untranslated region of various mRNA [, ]. This type of Znf is very often present in two copies. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding; PDB: 1M9O_A 1RGO_A 2CQE_A 2FC6_A 2D9M_A 2E5S_A 2RHK_C 2D9N_A 3D2S_A 3D2Q_C ....
Probab=67.16 E-value=1.8 Score=28.00 Aligned_cols=23 Identities=43% Similarity=1.125 Sum_probs=16.4
Q ss_pred cceeeeccCCCCCCCcccccCCc
Q 008885 315 MCFKFIYSGSCPRGEKCNFRHDT 337 (550)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~ 337 (550)
+|..|.+.|.|+.|+.|+|.|++
T Consensus 5 ~C~~f~~~g~C~~G~~C~f~H~~ 27 (27)
T PF00642_consen 5 LCRFFMRTGTCPFGDKCRFAHGE 27 (27)
T ss_dssp B-HHHHHTS--TTGGGSSSBSSG
T ss_pred cChhhccCCccCCCCCcCccCCC
Confidence 57778888899999999998863
No 160
>PF09587 PGA_cap: Bacterial capsule synthesis protein PGA_cap; InterPro: IPR019079 CapA is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein [].
Probab=65.62 E-value=1.5e+02 Score=29.51 Aligned_cols=105 Identities=14% Similarity=0.246 Sum_probs=58.1
Q ss_pred EEEEEcCCC--C---------ChHHHHHHHHHHhhhcCCCcEEEEecCCCCC---------C-h--hhHHHHHHHhcccC
Q 008885 5 RILLCGDVL--G---------RLNQLFKRVQSVNKSAGPFDAVLCVGQFFPD---------S-S--ELLDEFMNYVEGRS 61 (550)
Q Consensus 5 KILv~GDvh--G---------~~~~l~~kv~~l~~k~GpfD~li~~GDff~~---------~-~--~~~~~~~~~l~g~~ 61 (550)
+|+++||+- . .++.+|+.+..+-++. |++ ++.+-.+ . . ....++.+.| .
T Consensus 1 ti~~~GDi~~~~~~~~~~~~~~~~~~~~~v~~~l~~a---D~~--~~NlE~~v~~~~~~~~~~~~f~~~~~~~~~L---~ 72 (250)
T PF09587_consen 1 TIAFVGDIMLGRGVYQRAEKGGFDYIFEDVKPLLQSA---DLV--VANLETPVTDSGQPASGYPHFNAPPEILDAL---K 72 (250)
T ss_pred CEEEEeccccCcchhhhcccCChHHHHHHHHHHHhhC---CEE--EEEeeecCcCCCCcCCCcceecCCHHHHHHH---H
Confidence 477888863 2 4567787777766543 654 3444211 0 0 1112333343 5
Q ss_pred CCCccEEEEecCCCChHH---HHHHhhccccccCcccCCceecCcEEEcC--------C-CCeEEEcCeEEEEEeCccCC
Q 008885 62 EIPIPTYFIGDYGVGAAK---VLLAASKNSANQGFKMDGFKVTDNLFWLK--------G-SGNFTLHGLSVAYLSGRQSS 129 (550)
Q Consensus 62 ~~p~ptyfv~GNhe~~~~---~l~~l~~~~~~~~~~~~g~ei~~Nl~~Lg--------~-~gv~~i~GlrIa~lgG~~~~ 129 (550)
.+.+-++-+..||..+.. +.+.+..-+ ..++.+.| + --+++++|++|+.+|-....
T Consensus 73 ~~G~d~vslANNH~~D~G~~gl~~Tl~~L~------------~~gi~~~Gag~~~~~a~~p~i~~~~g~kia~l~~t~~~ 140 (250)
T PF09587_consen 73 DAGFDVVSLANNHIFDYGEEGLLDTLEALD------------KAGIPYVGAGRNLEEARRPAIIEVNGVKIAFLGYTDGE 140 (250)
T ss_pred HcCCCEEEecCCCCccccHHHHHHHHHHHH------------HCCCcEeECcCChHHhcCeEEEEECCEEEEEEEEEcCC
Confidence 566778888889976532 333332100 13344555 1 13457899999999987543
No 161
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=64.01 E-value=2 Score=46.09 Aligned_cols=69 Identities=16% Similarity=0.273 Sum_probs=43.4
Q ss_pred EEEEEcCCCCChHHHHHHHHHHhhhcC---CCcEEEEecCCCCCChhhHHHHHHHhcccCCCCccEEEEecCCCCh
Q 008885 5 RILLCGDVLGRLNQLFKRVQSVNKSAG---PFDAVLCVGQFFPDSSELLDEFMNYVEGRSEIPIPTYFIGDYGVGA 77 (550)
Q Consensus 5 KILv~GDvhG~~~~l~~kv~~l~~k~G---pfD~li~~GDff~~~~~~~~~~~~~l~g~~~~p~ptyfv~GNhe~~ 77 (550)
-|-||||.||.++.|+- +--|+| +=.--+.-|||..-+....+.+.-++.--.-.|..++.--||||++
T Consensus 166 qVTiCGDLHGklDDL~~----I~yKNGlPS~~npYvFNGDFVDRGk~siEvLmiL~a~~lv~P~~~~LNRGNHED~ 237 (631)
T KOG0377|consen 166 QVTICGDLHGKLDDLLV----ILYKNGLPSSSNPYVFNGDFVDRGKRSIEVLMILFALYLVYPNAVHLNRGNHEDH 237 (631)
T ss_pred ceEEeccccccccceEE----EEecCCCCCCCCCeeecCchhhccccchhhHHHHHHHHhcCchhhhccCCchHHH
Confidence 58899999999998752 233555 2233467899965444334333322221144566688888999976
No 162
>TIGR00209 galT_1 galactose-1-phosphate uridylyltransferase, family 1. This enzyme is involved in glucose and galactose interconversion. This model describes one of two extremely distantly related branches of the model pfam01087 from PFAM.
Probab=63.18 E-value=49 Score=35.05 Aligned_cols=109 Identities=13% Similarity=0.113 Sum_probs=60.2
Q ss_pred CCCcccCCCCCCCcceEEEECC-EEEEEecCCCCCC--------------------C-e-EEEEeccccCCCCCCCHHHH
Q 008885 389 KECWFCLSSPSVESHLIVSVGE-YYYCALPKGPLVE--------------------D-H-VLVIPVEHVPNTISTSPECE 445 (550)
Q Consensus 389 ~~C~FC~~~~~~~~hliis~g~-~~yl~l~kgpl~~--------------------g-H-~lIiP~~H~~s~~~l~~~~~ 445 (550)
+.|.||-.|...... + .-+= .++|+-+++|... | | ++|--=+|..++.+++.+.+
T Consensus 50 ~~CPfcpgne~~~~~-~-~~~w~~~rV~~N~fPal~~~~~~~~~~~~~l~~~~~~~G~~eVii~sp~H~~~l~~m~~~~i 127 (347)
T TIGR00209 50 PDCYLCPGNKRVTGD-L-NPDYTGTYVFTNDFAALMSDTPDAPESHDPLMRCQSARGTSRVICFSPDHSKTLPELSVAAL 127 (347)
T ss_pred CCCCCCCCCCCCCCC-c-CCCCceEEEEeCCCcccccCCCCCCcCCCcccccCCCCeeEEEEEeCCCccCChhHCCHHHH
Confidence 469999988543222 1 1111 3455555565321 2 2 34446689999999998876
Q ss_pred HHHHH-HHHHHHHHHhhcCCceEEEeecCC----CcCeEEEEEeecC---CCch---HHHHHHHHH
Q 008885 446 KELGR-FQNSLMMYYKNQGKEAVFFEWLSK----RGTHANLQAVPIP---TSKA---AAVQDIFNL 500 (550)
Q Consensus 446 ~Ei~~-~~~~L~~~~~~~~~~~v~~E~~~~----~~~H~hi~~vPvp---~~~~---~~~~~~F~~ 500 (550)
..+.. +++.+..+. +.=.-|.+||+... ...|-|-|++-.| .... +.+..||++
T Consensus 128 ~~v~~~~~~r~~~l~-~~i~yv~iF~N~G~~~GaSl~HPH~Qi~a~p~vP~~~~~e~~~~~~y~~~ 192 (347)
T TIGR00209 128 TEIVKTWQEQTAELG-KTYPWVQIFENKGAAMGCSNPHPHGQIWANSFLPNEVEREDRLQKEYFAE 192 (347)
T ss_pred HHHHHHHHHHHHHHH-hCCcEEEEEeecCcccCcCCCCCceeeeeCCCCChHHHHHHHHHHHHHHH
Confidence 66553 555555554 22223567882211 1468888877543 2222 245556554
No 163
>PF13483 Lactamase_B_3: Beta-lactamase superfamily domain; PDB: 1VJN_B 3KL7_A.
Probab=61.20 E-value=32 Score=31.66 Aligned_cols=62 Identities=19% Similarity=0.250 Sum_probs=32.6
Q ss_pred EEcCeEEEEEeCccCCCCCCCCCCCHHHHHHHHHhhcCCCCccEEEeCCCCccccccccccccccccCCCCCCcHHHHHH
Q 008885 114 TLHGLSVAYLSGRQSSEGQQFGTYSQDDVDALRALAEEPGIVDLFLTNEWPSGVTNKAAASDMLVGISDSSNTDSTVSEL 193 (550)
Q Consensus 114 ~i~GlrIa~lgG~~~~~~~~~~~~te~di~~L~~l~~~~~~vDILLTh~wP~gi~~~~~~~~~~~~~~~~~~Gs~~i~~l 193 (550)
+.+|++|...|-... ..+.+.+..+ .++|||+.-.-- . ...+.+...++
T Consensus 102 ~~~g~~i~~~Gd~~~----------~~~~~~~~~~----~~vDvl~~p~~g-------~----------~~~~~~~a~~~ 150 (163)
T PF13483_consen 102 EVGGVTIYHAGDTGF----------PPDDEQLKQL----GKVDVLFLPVGG-------P----------FTMGPEEAAEL 150 (163)
T ss_dssp EETTEEEEE-TT--S-------------HHHHHHH-----S-SEEEEE--T-------T----------TS--HHHHHHH
T ss_pred EeCCCEEEEECCCcc----------CCCHHHHhcc----cCCCEEEecCCC-------C----------cccCHHHHHHH
Confidence 456666666665432 1123344443 479999874322 1 13577788899
Q ss_pred HHHhCCCEEEEcc
Q 008885 194 VAEIKPRYHIAGS 206 (550)
Q Consensus 194 ~~~lkPRYhf~Gh 206 (550)
++.++||+.+--|
T Consensus 151 ~~~l~pk~viP~H 163 (163)
T PF13483_consen 151 AERLKPKLVIPMH 163 (163)
T ss_dssp HHHCT-SEEEEES
T ss_pred HHHcCCCEEEeCC
Confidence 9999999988654
No 164
>KOG0562 consensus Predicted hydrolase (HIT family) [General function prediction only]
Probab=58.47 E-value=10 Score=35.60 Aligned_cols=76 Identities=16% Similarity=0.146 Sum_probs=41.1
Q ss_pred CEEEEEecCCCCCCCeEEEEec-cccCCCCCC---CHHHHHHHHHHHHHHHHHHhhcCCceEEEe--e-cCCCcCeEEEE
Q 008885 410 EYYYCALPKGPLVEDHVLVIPV-EHVPNTIST---SPECEKELGRFQNSLMMYYKNQGKEAVFFE--W-LSKRGTHANLQ 482 (550)
Q Consensus 410 ~~~yl~l~kgpl~~gH~lIiP~-~H~~s~~~l---~~~~~~Ei~~~~~~L~~~~~~~~~~~v~~E--~-~~~~~~H~hi~ 482 (550)
+.+.|+-+++|=..-|.||.|. .=++++..+ .-+..+||...-.++...+...+. ..+|- + +--...|+|+|
T Consensus 23 d~vvvIrD~fPKa~~H~LvLpr~s~i~~l~~~~qe~l~ll~~~h~~~~~~v~~~~~~~~-~~~f~vG~HavPSM~~LHLH 101 (184)
T KOG0562|consen 23 DDVVVIRDKFPKARMHLLVLPRRSSIDSLFSVVQEHLSLLKEDHAVGPCWVDQLTNEAL-CNYFRVGFHAVPSMNNLHLH 101 (184)
T ss_pred ccEEEEcccCccceeEEEEecccchhHHHHHHHHHHhhHhHHHhhcCchHHHHhcchhh-hhheeeeeccCcchhheeEE
Confidence 4788888899999999999995 222222221 122344444444444444442211 11222 1 11124588999
Q ss_pred Eeec
Q 008885 483 AVPI 486 (550)
Q Consensus 483 ~vPv 486 (550)
||--
T Consensus 102 VISk 105 (184)
T KOG0562|consen 102 VISK 105 (184)
T ss_pred Eeec
Confidence 9863
No 165
>smart00356 ZnF_C3H1 zinc finger.
Probab=56.24 E-value=8.2 Score=24.23 Aligned_cols=21 Identities=43% Similarity=1.116 Sum_probs=17.1
Q ss_pred cceeeeccCCCCCCCcccccCC
Q 008885 315 MCFKFIYSGSCPRGEKCNFRHD 336 (550)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~ 336 (550)
+|..| ..|.|+.|..|+|.|.
T Consensus 6 ~C~~~-~~g~C~~g~~C~~~H~ 26 (27)
T smart00356 6 LCKFF-KRGYCPYGDRCKFAHP 26 (27)
T ss_pred cCcCc-cCCCCCCCCCcCCCCc
Confidence 57677 7788999999988775
No 166
>PF10686 DUF2493: Protein of unknown function (DUF2493); InterPro: IPR019627 This entry is represented by Mycobacteriophage D29, Gp61. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Members of this family are mainly Proteobacteria. The function is not known.
Probab=56.10 E-value=30 Score=27.86 Aligned_cols=38 Identities=21% Similarity=0.233 Sum_probs=30.9
Q ss_pred CCEEEEEcCCCC-ChHHHHHHHHHHhhhcCCCcEEEEecCC
Q 008885 3 PPRILLCGDVLG-RLNQLFKRVQSVNKSAGPFDAVLCVGQF 42 (550)
Q Consensus 3 ~~KILv~GDvhG-~~~~l~~kv~~l~~k~GpfD~li~~GDf 42 (550)
-|||||+|.-.= +.+.++..|.++.++.+ +++|+.|.-
T Consensus 3 g~rVli~GgR~~~D~~~i~~~Ld~~~~~~~--~~~lvhGga 41 (71)
T PF10686_consen 3 GMRVLITGGRDWTDHELIWAALDKVHARHP--DMVLVHGGA 41 (71)
T ss_pred CCEEEEEECCccccHHHHHHHHHHHHHhCC--CEEEEECCC
Confidence 489999998554 67889999999888874 788888876
No 167
>PF01076 Mob_Pre: Plasmid recombination enzyme; InterPro: IPR001668 With some plasmids, recombination can occur in a site specific manner that is independent of RecA. In such cases, the recombination event requires another protein called Pre. Pre is a plasmid recombination enzyme. This protein is also known as Mob (conjugative mobilisation) [].; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005727 extrachromosomal circular DNA
Probab=51.97 E-value=52 Score=31.79 Aligned_cols=54 Identities=17% Similarity=0.315 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHh-hcCC-ceEEEe-ecCCCcCeEEEEEeecCCCchHHHHHHH
Q 008885 445 EKELGRFQNSLMMYYK-NQGK-EAVFFE-WLSKRGTHANLQAVPIPTSKAAAVQDIF 498 (550)
Q Consensus 445 ~~Ei~~~~~~L~~~~~-~~~~-~~v~~E-~~~~~~~H~hi~~vPvp~~~~~~~~~~F 498 (550)
.+++.+|.+...+.|. .+|. .++..- ..--..+|+|+-+||+-.+.-..+..+|
T Consensus 97 ~e~~~~~~~~~~~~~~~r~g~~ni~~a~vH~DE~tPH~H~~~vP~~~~~rl~~k~~~ 153 (196)
T PF01076_consen 97 PEQQKRWFEDSLEWLQERYGNENIVSAVVHLDETTPHMHFDVVPIDEDGRLSAKRLF 153 (196)
T ss_pred hHHHHHHHHHHHHHHHHHCCchhEEEEEEECCCCCcceEEEEeecccccccchhhhh
Confidence 3455666666666666 4563 444333 3344589999999999766433455555
No 168
>PF12239 DUF3605: Protein of unknown function (DUF3605); InterPro: IPR022036 This family of proteins is found in eukaryotes and viruses. Proteins in this family are typically between 161 and 256 amino acids in length.
Probab=51.57 E-value=72 Score=29.92 Aligned_cols=69 Identities=22% Similarity=0.372 Sum_probs=44.0
Q ss_pred EEEEecC-CC--CCCC--eEEE---EeccccCCCCCCCHHHHHHHHHHHHHHH-HHHhhcCCceEEEe-ecCCC----cC
Q 008885 412 YYCALPK-GP--LVED--HVLV---IPVEHVPNTISTSPECEKELGRFQNSLM-MYYKNQGKEAVFFE-WLSKR----GT 477 (550)
Q Consensus 412 ~yl~l~k-gp--l~~g--H~lI---iP~~H~~s~~~l~~~~~~Ei~~~~~~L~-~~~~~~~~~~v~~E-~~~~~----~~ 477 (550)
-|-++.. .| +.+| |.+| +|+..-+...+++++..++|.+|.+..- .-+ ..+..++.|. ..+.+ ..
T Consensus 73 d~kIl~NDwPY~~e~~I~HlVVWsK~~L~~d~~~gd~t~~~r~~I~~fv~~~f~~~~-~~~~~v~WF~N~~~LqSV~~v~ 151 (158)
T PF12239_consen 73 DYKILRNDWPYGFEPGIVHLVVWSKFPLPVDPETGDLTPESRELIEDFVQRTFVDRL-IPEDNVLWFKNWPSLQSVRAVE 151 (158)
T ss_pred ceEEEecCCCcCCCCCceEEEEEecCccccccccccccHHHHHHHHHHHHHHHHhhc-CCCccEEEEeCchhcCCcCcce
Confidence 3444444 56 4455 8887 6777778788899999999999876433 112 2234677777 33333 35
Q ss_pred eEEE
Q 008885 478 HANL 481 (550)
Q Consensus 478 H~hi 481 (550)
|+|+
T Consensus 152 H~HV 155 (158)
T PF12239_consen 152 HIHV 155 (158)
T ss_pred EEEE
Confidence 7776
No 169
>KOG2720 consensus Predicted hydrolase (HIT family) [General function prediction only]
Probab=49.67 E-value=14 Score=38.70 Aligned_cols=70 Identities=17% Similarity=0.159 Sum_probs=35.7
Q ss_pred EEecCCCCCCCeEEEEeccccCCCCCCCHHHHHHHHHHHHHHHHHHhhcCC-ceEEEeec-CC-CcCeEEEEEeecCCC
Q 008885 414 CALPKGPLVEDHVLVIPVEHVPNTISTSPECEKELGRFQNSLMMYYKNQGK-EAVFFEWL-SK-RGTHANLQAVPIPTS 489 (550)
Q Consensus 414 l~l~kgpl~~gH~lIiP~~H~~s~~~l~~~~~~Ei~~~~~~L~~~~~~~~~-~~v~~E~~-~~-~~~H~hi~~vPvp~~ 489 (550)
|++++-|+..||+||||.----..--++ ....+-++.-|....+. --+.|... .. .+-|+|+|..=.|.+
T Consensus 170 vaIN~sPie~~H~LiiP~V~kc~pQrit------~~al~lav~~m~~~dd~~frlgyNSlga~AsVNHLHfha~y~p~d 242 (431)
T KOG2720|consen 170 VAINVSPIEYGHVLIIPRVLKCLPQRIT------HKALLLAVTMMAEADDPYFRLGYNSLGAFASVNHLHFHAYYLPMD 242 (431)
T ss_pred EEEecCccccCcEEEecchhccCcceee------HHHHHHHHHHHHhcCCchhheecccchhhhhhhhhhhhhhhcccc
Confidence 4566779999999999964322222222 22333444455443321 11222201 11 145888888644443
No 170
>PF13277 YmdB: YmdB-like protein; PDB: 2CV9_B 2Z06_C.
Probab=47.70 E-value=41 Score=33.94 Aligned_cols=70 Identities=14% Similarity=0.278 Sum_probs=37.8
Q ss_pred EEEcCCCCC--hHHHHHHHHHHhhhcCCCcEEEEecCC----CCCChhhHHHHHHHhcccCCCCccEEEEecCCCCh-HH
Q 008885 7 LLCGDVLGR--LNQLFKRVQSVNKSAGPFDAVLCVGQF----FPDSSELLDEFMNYVEGRSEIPIPTYFIGDYGVGA-AK 79 (550)
Q Consensus 7 Lv~GDvhG~--~~~l~~kv~~l~~k~GpfD~li~~GDf----f~~~~~~~~~~~~~l~g~~~~p~ptyfv~GNhe~~-~~ 79 (550)
|++||+=|+ .+.+.+.+..|.++. .+|+||+=|.= ++.....-++|.++ | .. .++.|||--+ .+
T Consensus 1 LfiGDIvG~~Gr~~v~~~Lp~L~~~~-~~DfVIaNgENaa~G~Git~~~~~~L~~~--G-vD-----viT~GNH~wdkke 71 (253)
T PF13277_consen 1 LFIGDIVGKPGRRAVKEHLPELKEEY-GIDFVIANGENAAGGFGITPKIAEELFKA--G-VD-----VITMGNHIWDKKE 71 (253)
T ss_dssp EEE-EBBCHHHHHHHHHHHHHHGG---G-SEEEEE-TTTTTTSS--HHHHHHHHHH--T--S-----EEE--TTTTSSTT
T ss_pred CeEEecCCHHHHHHHHHHHHHHHhhc-CCCEEEECCcccCCCCCCCHHHHHHHHhc--C-CC-----EEecCcccccCcH
Confidence 789999997 456667788887776 48999999985 33333322233322 2 22 5789999654 33
Q ss_pred HHHHhh
Q 008885 80 VLLAAS 85 (550)
Q Consensus 80 ~l~~l~ 85 (550)
+++.+.
T Consensus 72 i~~~i~ 77 (253)
T PF13277_consen 72 IFDFID 77 (253)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 555443
No 171
>PTZ00235 DNA polymerase epsilon subunit B; Provisional
Probab=36.82 E-value=1.3e+02 Score=30.99 Aligned_cols=42 Identities=12% Similarity=0.098 Sum_probs=31.9
Q ss_pred CCEEEEEcCCCCChHHHHHHHHHHhhhc-C------CCcEEEEecCCCC
Q 008885 3 PPRILLCGDVLGRLNQLFKRVQSVNKSA-G------PFDAVLCVGQFFP 44 (550)
Q Consensus 3 ~~KILv~GDvhG~~~~l~~kv~~l~~k~-G------pfD~li~~GDff~ 44 (550)
..||+++||+|=+-...+++++++-.+. . ..-++|.+|+|..
T Consensus 27 ~~~~VilSDV~LD~p~tl~~L~kvf~~y~~~~~~~~~P~~fVL~GnF~S 75 (291)
T PTZ00235 27 RHNWIIMHDVYLDSPYTFEVLDKMLSLYVNTYPENELPVGFIFMGDFIS 75 (291)
T ss_pred ceEEEEEEeeccCCHHHHHHHHHHHHHhhccCcccCCCeEEEEecCccC
Confidence 3689999999988778888887776543 1 1468899999954
No 172
>KOG3770 consensus Acid sphingomyelinase and PHM5 phosphate metabolism protein [Lipid transport and metabolism]
Probab=36.46 E-value=98 Score=34.91 Aligned_cols=63 Identities=10% Similarity=0.101 Sum_probs=35.7
Q ss_pred ChHHHHHHHHHHhhhcCCCcEEEEecCCCCCCh------h---hHHHHHHHhcccCCCCccEEEEecCCCChH
Q 008885 15 RLNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSS------E---LLDEFMNYVEGRSEIPIPTYFIGDYGVGAA 78 (550)
Q Consensus 15 ~~~~l~~kv~~l~~k~GpfD~li~~GDff~~~~------~---~~~~~~~~l~g~~~~p~ptyfv~GNhe~~~ 78 (550)
....+-+.+..+.+-...+|+|+..||....+. . ....+.+.+.. .--++|+|...||||..+
T Consensus 193 P~~lies~L~~ike~~~~iD~I~wTGD~~~H~~w~~t~~~~l~~~~~l~~~~~e-~FpdvpvypalGNhe~~P 264 (577)
T KOG3770|consen 193 PKRLIESALDHIKENHKDIDYIIWTGDNVAHDVWAQTEEENLSMLSRLTSLLSE-YFPDVPVYPALGNHEIHP 264 (577)
T ss_pred CHHHHHHHHHHHHhcCCCCCEEEEeCCCCcccchhhhHHHHHHHHHHHHHHHHH-hCCCCceeeecccCCCCc
Confidence 344444445555433334999999999965421 1 11122222211 113689999999998754
No 173
>KOG3818 consensus DNA polymerase epsilon, subunit B [Replication, recombination and repair]
Probab=35.49 E-value=1.5e+02 Score=32.44 Aligned_cols=42 Identities=14% Similarity=0.303 Sum_probs=35.6
Q ss_pred CEEEEEcCCCCChHHHHHHHHHHhhhc--CCCcEEEEecCCCCC
Q 008885 4 PRILLCGDVLGRLNQLFKRVQSVNKSA--GPFDAVLCVGQFFPD 45 (550)
Q Consensus 4 ~KILv~GDvhG~~~~l~~kv~~l~~k~--GpfD~li~~GDff~~ 45 (550)
.++.+++|++=+-.+++++++++-.+. -|.-++|.||.|.+.
T Consensus 283 ~~fVfLSdV~LD~~~vm~aL~kifqgy~~~pP~~iIlcG~FtS~ 326 (525)
T KOG3818|consen 283 TSFVFLSDVFLDDKKVMEALRKIFQGYKDAPPTAIILCGSFTSS 326 (525)
T ss_pred ceEEEEehhccccHHHHHHHHHHHhhccCCCCeEEEEecccccc
Confidence 478888999999999999999997753 377899999999654
No 174
>COG5082 AIR1 Arginine methyltransferase-interacting protein, contains RING Zn-finger [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=33.42 E-value=71 Score=30.85 Aligned_cols=31 Identities=23% Similarity=0.414 Sum_probs=23.3
Q ss_pred CCCCCCcceeeeccCC----CCCCCcccccCCchhh
Q 008885 309 GGDGDKMCFKFIYSGS----CPRGEKCNFRHDTDAR 340 (550)
Q Consensus 309 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~ 340 (550)
..+.+++||.|.+.|+ || ..+|-.|...+++
T Consensus 56 ~~~~~~~C~nCg~~GH~~~DCP-~~iC~~C~~~~H~ 90 (190)
T COG5082 56 IREENPVCFNCGQNGHLRRDCP-HSICYNCSWDGHR 90 (190)
T ss_pred ccccccccchhcccCcccccCC-hhHhhhcCCCCcc
Confidence 3345679999999998 99 8999988334444
No 175
>KOG1677 consensus CCCH-type Zn-finger protein [General function prediction only]
Probab=31.86 E-value=40 Score=35.15 Aligned_cols=59 Identities=31% Similarity=0.715 Sum_probs=47.4
Q ss_pred CcceeeeccCCCCC-CCcccccCCchh------------hhhhccccchhhhcccccCCCCCccccCCcCCC
Q 008885 314 KMCFKFIYSGSCPR-GEKCNFRHDTDA------------REQCLRGVCLDFIIKGKCEKGPECSYKHSLQND 372 (550)
Q Consensus 314 ~~~~~~~~~~~~~~-~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 372 (550)
..|--|...|.|.- |..|+|.|-... ...+-.-.|..|...|.|--|.+|.|.|...+.
T Consensus 133 ~lc~~~~~~g~c~y~ge~crfah~~~e~r~~~~~~~~~~~~~~kt~lC~~f~~tG~C~yG~rC~F~H~~~~~ 204 (332)
T KOG1677|consen 133 PLCRSFRKSGTCKYRGEQCRFAHGLEELRLPSSENQVGNPPKYKTKLCPKFQKTGLCKYGSRCRFIHGEPED 204 (332)
T ss_pred CcceeeecCccccccCchhhhcCCcccccccccchhhcCCCCCCCcCCCccccCCCCCCCCcCeecCCCccc
Confidence 47888889999998 999999655322 234557789999999999999999999997654
No 176
>TIGR01239 galT_2 galactose-1-phosphate uridylyltransferase, family 2. This enzyme is involved in glucose and galactose interconversion. This model describes one of two extremely distantly related branches of the model pfam01087 from PFAM.
Probab=31.44 E-value=67 Score=35.26 Aligned_cols=75 Identities=19% Similarity=0.329 Sum_probs=55.1
Q ss_pred CCCCcccCCCCC---------CCcceEEEE---CCEEEEEecCCCCCCCeEEEEeccccCCCCCCCHHHHHHHHHHHHHH
Q 008885 388 SKECWFCLSSPS---------VESHLIVSV---GEYYYCALPKGPLVEDHVLVIPVEHVPNTISTSPECEKELGRFQNSL 455 (550)
Q Consensus 388 ~~~C~FC~~~~~---------~~~hliis~---g~~~yl~l~kgpl~~gH~lIiP~~H~~s~~~l~~~~~~Ei~~~~~~L 455 (550)
=..|..|+.|.. ...|.||-+ |+.-|+-...+.+-.-||+|.--+|.|- .++..++..|..|.+.+
T Consensus 168 YPkC~LC~ENeGY~Gr~nhPAR~NhRiI~~~L~ge~W~fQYSPY~YynEHcIvl~~~H~PM--kI~~~tF~~Ll~fv~~f 245 (489)
T TIGR01239 168 YPACQLCMENEGFEGSVNHPARSNHRIIRVILEDEQWGFQFSPYAYFPEHSIVLKGKHEPM--EISKKTFERLLSFLGKF 245 (489)
T ss_pred CCccchhccccCcCCCCCCCcccCceEEEEeeCCccceeeccchheecceeEEecCccCCc--EecHHHHHHHHHHHHhC
Confidence 347999999842 467777543 3444566666777789999999999995 46889999999988877
Q ss_pred HHHHhhcCC
Q 008885 456 MMYYKNQGK 464 (550)
Q Consensus 456 ~~~~~~~~~ 464 (550)
=.+|--.+.
T Consensus 246 PhYFiGSNA 254 (489)
T TIGR01239 246 PHYFIGSNA 254 (489)
T ss_pred CccccccCC
Confidence 666654333
No 177
>TIGR00672 cdh CDP-diacylglycerol pyrophosphatase, bacterial type. Alternate names for this enzyme include CDP-diglyceride hydrolase and CDP-diacylglycerol hydrolase.
Probab=29.34 E-value=1.8e+02 Score=29.45 Aligned_cols=97 Identities=19% Similarity=0.159 Sum_probs=60.9
Q ss_pred EEEEecCCCCCCCeEEEEeccccCCCCC------CCHHHHHHHHHHHHHHHHHHhh-cCCceEEEeecC--CCc-CeEEE
Q 008885 412 YYCALPKGPLVEDHVLVIPVEHVPNTIS------TSPECEKELGRFQNSLMMYYKN-QGKEAVFFEWLS--KRG-THANL 481 (550)
Q Consensus 412 ~yl~l~kgpl~~gH~lIiP~~H~~s~~~------l~~~~~~Ei~~~~~~L~~~~~~-~~~~~v~~E~~~--~~~-~H~hi 481 (550)
=|+.+ |.+--+-|.|+||...+.-+.+ -+++-|.+-++-+..+.+.+.+ -.-..+...+++ +|+ .|+||
T Consensus 62 gyvvl-KD~~Gp~qyLLmPt~rIsGIEsP~Ll~~~tpnyf~~AW~aR~~v~~~~g~pipd~~lsLaINS~~gRSQnQLHI 140 (250)
T TIGR00672 62 GYVVL-KDLNGPLQYLLMPTYRINGTESPLLLDPSTPNFFWLAWQARDFMSKKYGQPIPDRAVSLAINSRTGRSQNHFHI 140 (250)
T ss_pred CeEEE-eCCCCCceeEEeeccccCCccChhhcCCCCccHHHHHHHHhHHHHHhcCCCCChhheeEEecCCCCccccccee
Confidence 34443 3334456999999999988775 2556777777777777666653 222345555222 232 35555
Q ss_pred EEeecCCCchHHHHHHHHHHHHHcCCcccccc
Q 008885 482 QAVPIPTSKAAAVQDIFNLAAEKLGFKFLATK 513 (550)
Q Consensus 482 ~~vPvp~~~~~~~~~~F~~~~~~~~~~~~~~~ 513 (550)
|+=-+ -..+.......+...+..|...+
T Consensus 141 HIsCl----rpdv~~~L~~~~~~i~~~W~~lp 168 (250)
T TIGR00672 141 HISCI----RPDVRKQLDNNLKKISSRWLPLP 168 (250)
T ss_pred eHhhC----CHHHHHHHHHhcccccCCceeCC
Confidence 54322 25677788888888899999877
No 178
>KOG1747 consensus Protein tyrosine kinase 9/actin monomer-binding protein [Extracellular structures]
Probab=28.76 E-value=1.2e+02 Score=31.42 Aligned_cols=49 Identities=20% Similarity=0.322 Sum_probs=33.9
Q ss_pred cHHHHHHHHHh---CCCEEEEc----cCCCccccccccCCCCcceeEEE-EcCCCCCcccceeEEEec
Q 008885 187 DSTVSELVAEI---KPRYHIAG----SKGVFYAREPYSNVDAVHVTRFL-GLAPVGNKEKQKFIHALS 246 (550)
Q Consensus 187 s~~i~~l~~~l---kPRYhf~G----h~~~f~er~Py~~~~~~~~TRFI-~La~~g~~~K~Kw~yAf~ 246 (550)
+..+++|-..+ .|||||+- |+|.+.| -+-|| ++..+|..-|.|-+|+=+
T Consensus 217 ~~e~sdL~s~vP~d~prY~ff~~~ht~eGD~~e-----------s~~FIYS~P~~~~sVKeRMlYSSc 273 (342)
T KOG1747|consen 217 CTEPSDLPSRVPRDGPRYHFFLFKHTHEGDPLE-----------SIVFIYSMPGYGCSVKERMLYSSC 273 (342)
T ss_pred CCChHHhhhhcCCCCCceEEEecccccCCCCce-----------eEEEEEECCCCCcchhhhhHhhhc
Confidence 34556665554 69999998 5666666 47787 666668777888888644
No 179
>PRK05471 CDP-diacylglycerol pyrophosphatase; Provisional
Probab=27.87 E-value=2e+02 Score=29.16 Aligned_cols=97 Identities=13% Similarity=0.109 Sum_probs=61.7
Q ss_pred EEEEecCCCCCCCeEEEEeccccCCCCC------CCHHHHHHHHHHHHHHHHHHhh-cCCceEEEeecC--CCc-CeEEE
Q 008885 412 YYCALPKGPLVEDHVLVIPVEHVPNTIS------TSPECEKELGRFQNSLMMYYKN-QGKEAVFFEWLS--KRG-THANL 481 (550)
Q Consensus 412 ~yl~l~kgpl~~gH~lIiP~~H~~s~~~------l~~~~~~Ei~~~~~~L~~~~~~-~~~~~v~~E~~~--~~~-~H~hi 481 (550)
=|+.+- .+--+-|.|+||...+.-+.+ -+++-|.+-+.-+..+.+.+.+ -.-+.+...+++ .|+ .|+||
T Consensus 63 gyvvlK-D~~Gp~qyLLiPt~rIsGIEsP~Ll~~~tpnyf~~AW~aR~~v~~~~g~pipd~~lsLaINS~~gRSQnQLHI 141 (252)
T PRK05471 63 GYVLLK-DRNGPLQYLLMPTYRISGIESPLLLEPSTPNYFALAWQARDFMSKKYGKPIPDSAVSLAINSRYGRTQDQLHI 141 (252)
T ss_pred CeEEEe-cCCCCcceEEeecccccCccCccccCCCCccHHHHHHHHhHHHHHhhCCCCChhheEEEecCCCCccccceee
Confidence 344443 344456999999999988775 2456788877777777766663 233445555222 232 35555
Q ss_pred EEeecCCCchHHHHHHHHHHHHHcCCcccccc
Q 008885 482 QAVPIPTSKAAAVQDIFNLAAEKLGFKFLATK 513 (550)
Q Consensus 482 ~~vPvp~~~~~~~~~~F~~~~~~~~~~~~~~~ 513 (550)
|+--+ -..+.......+...+..|...+
T Consensus 142 HIsCl----rp~v~~~L~~~~~~i~~~W~~lp 169 (252)
T PRK05471 142 HISCL----RPDVRAQLDNNLAAISSRWLPLP 169 (252)
T ss_pred ehhhC----CHHHHHHHHHhcccCCCCceeCC
Confidence 54332 25677788888888899999777
No 180
>PRK05270 galactose-1-phosphate uridylyltransferase; Provisional
Probab=24.95 E-value=1.1e+02 Score=33.66 Aligned_cols=72 Identities=19% Similarity=0.391 Sum_probs=54.9
Q ss_pred CCCCcccCCCCC---------CCcceEEEE---CCEEEEEecCCCCCCCeEEEEeccccCCCCCCCHHHHHHHHHHHHHH
Q 008885 388 SKECWFCLSSPS---------VESHLIVSV---GEYYYCALPKGPLVEDHVLVIPVEHVPNTISTSPECEKELGRFQNSL 455 (550)
Q Consensus 388 ~~~C~FC~~~~~---------~~~hliis~---g~~~yl~l~kgpl~~gH~lIiP~~H~~s~~~l~~~~~~Ei~~~~~~L 455 (550)
=..|..|..|.. ...|.||-+ |+.-|+-...+.+-.-||+|+--+|.|- .++.+++..|..|.+.+
T Consensus 171 YP~C~LC~ENeGY~Gr~~hPAR~NhRiI~~~L~ge~W~fQYSPY~YynEH~Ivl~~~H~PM--kI~~~tF~rLL~fv~~f 248 (493)
T PRK05270 171 YPKCLLCMENEGYAGRLNHPARSNHRIIRLTLGGESWGFQYSPYAYFNEHCIVLSEKHRPM--KISRKTFERLLDFVEQF 248 (493)
T ss_pred CCcccccccccCcCCCCCCccccCceEEEEeeCCceeeeecCchheecceeEEecCccCcc--EecHHHHHHHHHHHHhC
Confidence 457999999832 566777543 4445566666778899999999999994 46889999999998877
Q ss_pred HHHHhh
Q 008885 456 MMYYKN 461 (550)
Q Consensus 456 ~~~~~~ 461 (550)
=.+|--
T Consensus 249 PhYFiG 254 (493)
T PRK05270 249 PHYFIG 254 (493)
T ss_pred Cccccc
Confidence 766654
No 181
>PHA03073 late transcription factor VLTF-2; Provisional
Probab=22.85 E-value=1.8e+02 Score=26.67 Aligned_cols=50 Identities=8% Similarity=0.165 Sum_probs=25.2
Q ss_pred EeccccCCCCCCCHHHHHHHHHHHHHHHHHHhhcC-CceEEEeecCCCcCeE
Q 008885 429 IPVEHVPNTISTSPECEKELGRFQNSLMMYYKNQG-KEAVFFEWLSKRGTHA 479 (550)
Q Consensus 429 iP~~H~~s~~~l~~~~~~Ei~~~~~~L~~~~~~~~-~~~v~~E~~~~~~~H~ 479 (550)
|+++-.|.+..||-+.++.-.++..-+...=.+.| ++..||+ .+.+..|+
T Consensus 94 vALREePKi~LLPl~~y~~pe~V~niIN~LrnkegvYG~C~~~-e~~~~i~i 144 (150)
T PHA03073 94 VALREEPKITLLPLVFYEDPEEVINIINLLRNKEGVYGSCFYK-ENDQSIDI 144 (150)
T ss_pred hhhccCCceEEechhhhcCHHHHHHHHHhhhhhcCccceEEEe-eCCcEEEE
Confidence 45555555555665555544444433333333444 4667888 34444443
No 182
>KOG3969 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.36 E-value=3.7e+02 Score=27.62 Aligned_cols=90 Identities=18% Similarity=0.172 Sum_probs=53.6
Q ss_pred CCcceEEEECCE---EEEEecC---CCCC--CCeEEEEe-ccccCCCCCCCHHHHHHHHHHHHHHHHHHh-hcCCc----
Q 008885 400 VESHLIVSVGEY---YYCALPK---GPLV--EDHVLVIP-VEHVPNTISTSPECEKELGRFQNSLMMYYK-NQGKE---- 465 (550)
Q Consensus 400 ~~~hliis~g~~---~yl~l~k---gpl~--~gH~lIiP-~~H~~s~~~l~~~~~~Ei~~~~~~L~~~~~-~~~~~---- 465 (550)
.|...||..+.. -|+.+|. .+-+ .-|+|.|= ..-..|+.+|..+-++=+.+.++..+..+. .+|.+
T Consensus 157 aE~driV~ed~d~~nGFillPDlKWdgqtld~LyllaIvhr~dikSiRDL~~~h~~lL~n~r~k~~~~i~~~y~v~~dql 236 (310)
T KOG3969|consen 157 AEDDRIVYEDPDPENGFILLPDLKWDGQTLDSLYLLAIVHRRDIKSIRDLRPSHLQLLRNIRNKSREAIPQRYGVDPDQL 236 (310)
T ss_pred ccccceEEecCCCcCCeEEccccccCcccccceeEEEEEecCCcchhhhCCHHHHHHHHHHHHHHHHHHHHHhCCCchhE
Confidence 444556655432 4778884 4433 44554332 233556778888888888888877777655 34433
Q ss_pred eEEEeecCCCcCeEEEEEeecCCCc
Q 008885 466 AVFFEWLSKRGTHANLQAVPIPTSK 490 (550)
Q Consensus 466 ~v~~E~~~~~~~H~hi~~vPvp~~~ 490 (550)
-+||-+. -.-.|+|+|+++|-.+.
T Consensus 237 rmf~HYq-PSyYHlHVHi~nik~~~ 260 (310)
T KOG3969|consen 237 RMFFHYQ-PSYYHLHVHIVNIKHDH 260 (310)
T ss_pred EEEEEec-CceEEEEEEEEeccCCC
Confidence 2333311 12469999999997663
Done!