Query 008885
Match_columns 550
No_of_seqs 308 out of 1476
Neff 7.1
Searched_HMMs 29240
Date Mon Mar 25 13:59:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008885.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008885hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rl5_A Metallophosphoesterase 99.8 2.1E-19 7.1E-24 182.6 17.2 205 3-236 59-278 (296)
2 2yvt_A Hypothetical protein AQ 99.7 1.8E-17 6.2E-22 164.0 16.7 206 1-235 1-241 (260)
3 1uf3_A Hypothetical protein TT 99.7 2.7E-17 9.2E-22 158.8 16.5 194 1-234 1-208 (228)
4 3imi_A HIT family protein; str 99.6 2.9E-15 1E-19 137.2 8.0 105 384-489 4-115 (147)
5 1y23_A HIT, histidine triad pr 99.6 1.8E-15 6.2E-20 138.0 6.3 101 388-489 4-111 (145)
6 3o0m_A HIT family protein; ssg 99.6 4.5E-15 1.5E-19 136.3 8.4 102 388-489 4-112 (149)
7 3lb5_A HIT-like protein involv 99.6 7.3E-15 2.5E-19 136.6 9.9 102 388-489 27-134 (161)
8 3n1s_A HIT-like protein HINT; 99.6 4.5E-15 1.5E-19 131.1 7.7 98 389-487 3-108 (119)
9 2oik_A Histidine triad (HIT) p 99.5 2.3E-14 7.8E-19 132.2 11.8 98 388-489 9-107 (154)
10 3p0t_A Uncharacterized protein 99.5 1.1E-14 3.9E-19 131.7 8.8 98 390-488 6-105 (138)
11 3l7x_A SMU.412C, putative HIT- 99.5 8.7E-15 3E-19 137.6 7.4 102 387-488 34-141 (173)
12 4egu_A Histidine triad (HIT) p 99.5 1.1E-14 3.7E-19 128.5 7.4 99 389-487 4-109 (119)
13 3oj7_A Putative histidine tria 99.5 7.5E-15 2.6E-19 129.2 6.0 99 388-486 5-109 (117)
14 3r6f_A HIT family protein; str 99.5 2.1E-15 7E-20 136.2 2.4 100 388-489 5-104 (135)
15 3ano_A AP-4-A phosphorylase; d 99.5 1E-14 3.5E-19 141.7 7.2 102 388-489 68-177 (218)
16 2eo4_A 150AA long hypothetical 99.5 1E-14 3.5E-19 133.8 6.7 98 391-489 1-105 (149)
17 3o1c_A Histidine triad nucleot 99.5 2.3E-14 7.8E-19 127.8 5.6 98 388-486 14-118 (126)
18 1xqu_A HIT family hydrolase; p 99.5 2.3E-14 7.9E-19 131.2 5.5 100 388-487 34-140 (147)
19 3ksv_A Uncharacterized protein 99.5 5.1E-14 1.8E-18 129.2 7.2 100 389-489 11-117 (149)
20 3d03_A Phosphohydrolase; glyce 99.4 6.3E-12 2.1E-16 124.6 20.5 201 4-234 1-217 (274)
21 3ib7_A ICC protein; metallopho 99.3 2.2E-11 7.5E-16 124.1 18.1 201 3-234 25-240 (330)
22 1fit_A FragIle histidine prote 99.3 4.7E-12 1.6E-16 115.7 8.7 90 400-489 10-105 (147)
23 3ohe_A Histidine triad (HIT) p 99.2 1.6E-11 5.6E-16 110.9 8.0 89 401-489 11-100 (137)
24 3i24_A HIT family hydrolase; s 99.2 1.8E-11 6.3E-16 112.0 7.5 89 401-489 11-100 (149)
25 1ems_A Nitfhit, NIT-fragIle hi 99.2 2E-11 6.8E-16 130.9 8.7 100 388-489 296-401 (440)
26 3ck2_A Conserved uncharacteriz 99.2 4.2E-10 1.4E-14 105.3 14.3 132 1-235 4-135 (176)
27 1s3l_A Hypothetical protein MJ 99.1 1.5E-09 5.2E-14 103.2 17.2 65 3-78 25-89 (190)
28 1nnw_A Hypothetical protein; s 99.1 8.6E-10 2.9E-14 108.5 13.7 188 4-236 2-198 (252)
29 2a22_A Vacuolar protein sortin 99.0 1.4E-09 4.8E-14 105.3 11.9 144 4-235 26-171 (215)
30 1z2w_A Vacuolar protein sortin 99.0 1.7E-09 5.9E-14 102.6 11.0 135 4-235 11-147 (192)
31 3rqz_A Metallophosphoesterase; 99.0 2.7E-10 9.1E-15 112.4 4.2 178 3-237 3-195 (246)
32 3nrd_A Histidine triad (HIT) p 98.9 3.6E-09 1.2E-13 95.2 10.7 88 401-489 13-102 (135)
33 2nxf_A Putative dimetal phosph 98.9 1.3E-08 4.3E-13 102.5 15.3 206 3-233 5-286 (322)
34 3qfm_A SAPH, putative uncharac 98.9 5.6E-09 1.9E-13 104.7 12.5 184 1-236 9-196 (270)
35 1z84_A Galactose-1-phosphate u 98.9 1.4E-09 4.9E-14 113.0 8.4 98 389-489 214-321 (351)
36 1gup_A Galactose-1-phosphate u 98.9 8.4E-10 2.9E-14 114.7 6.2 97 389-485 194-301 (348)
37 2q8u_A Exonuclease, putative; 98.8 5.3E-09 1.8E-13 107.8 9.5 219 2-250 17-269 (336)
38 1ute_A Protein (II purple acid 98.8 1.1E-08 3.9E-13 102.6 11.6 205 3-235 6-244 (313)
39 2kkn_A Uncharacterized protein 98.8 3.6E-09 1.2E-13 99.6 5.7 62 4-77 23-86 (178)
40 2xmo_A LMO2642 protein; phosph 98.8 1.9E-07 6.6E-12 99.4 19.5 211 3-234 39-307 (443)
41 1xm7_A Hypothetical protein AQ 98.8 2.3E-08 7.9E-13 94.9 11.0 140 3-212 1-153 (195)
42 3i4s_A Histidine triad protein 98.8 2.6E-08 8.9E-13 91.0 10.7 89 400-489 15-105 (149)
43 3av0_A DNA double-strand break 98.8 2.1E-08 7.1E-13 105.5 11.0 204 2-249 19-251 (386)
44 3tho_B Exonuclease, putative; 98.8 5E-08 1.7E-12 102.5 13.5 215 4-251 1-252 (379)
45 1ii7_A MRE11 nuclease; RAD50, 98.6 1.8E-07 6.1E-12 96.2 12.7 73 4-77 1-88 (333)
46 1su1_A Hypothetical protein YF 98.4 5.2E-07 1.8E-11 86.7 8.0 69 4-77 26-101 (208)
47 1xzw_A Purple acid phosphatase 98.4 6.7E-06 2.3E-10 87.3 16.4 209 3-235 126-363 (426)
48 1hp1_A 5'-nucleotidase; metall 98.3 1.3E-05 4.6E-10 87.2 18.7 211 3-235 8-268 (516)
49 3sp4_A Aprataxin-like protein; 98.3 3.5E-07 1.2E-11 87.2 5.2 86 405-490 23-129 (204)
50 2qfp_A Purple acid phosphatase 98.2 1.1E-05 3.7E-10 85.6 14.8 191 3-217 119-326 (424)
51 4fbw_A DNA repair protein RAD3 98.2 1.3E-05 4.4E-10 84.9 13.2 50 197-249 237-292 (417)
52 4fbk_A DNA repair and telomere 98.2 1.2E-05 3.9E-10 86.2 12.7 49 198-249 301-355 (472)
53 3qfk_A Uncharacterized protein 98.1 3.3E-05 1.1E-09 84.4 15.8 205 3-235 19-269 (527)
54 3tgh_A Glideosome-associated p 98.1 4.4E-06 1.5E-10 86.5 7.0 209 3-235 3-255 (342)
55 1g5b_A Serine/threonine protei 98.0 4.1E-06 1.4E-10 80.8 4.8 67 3-76 12-78 (221)
56 2dfj_A Diadenosinetetraphospha 97.9 4.7E-06 1.6E-10 83.9 4.2 68 4-76 1-68 (280)
57 2qjc_A Diadenosine tetraphosph 97.9 8.6E-06 2.9E-10 81.0 5.0 66 4-76 19-84 (262)
58 3ive_A Nucleotidase; structura 97.8 0.00099 3.4E-08 72.4 20.6 204 3-235 6-257 (509)
59 3t1i_A Double-strand break rep 97.6 0.00015 5E-09 77.1 10.0 74 3-77 32-152 (431)
60 3h63_A Serine/threonine-protei 97.6 7.9E-05 2.7E-09 76.0 7.3 74 3-77 59-132 (315)
61 3icf_A PPT, serine/threonine-p 97.6 8.5E-05 2.9E-09 76.3 7.0 74 3-77 63-136 (335)
62 2ie4_C PP2A-alpha;, serine/thr 97.6 6.4E-05 2.2E-09 76.6 6.0 72 3-77 49-121 (309)
63 1wao_1 Serine/threonine protei 97.6 8.1E-05 2.8E-09 80.1 6.9 74 3-77 212-285 (477)
64 2z72_A Protein-tyrosine-phosph 97.5 5.2E-05 1.8E-09 78.3 5.0 73 3-76 70-152 (342)
65 1fjm_A Protein serine/threonin 97.5 7.2E-05 2.4E-09 76.9 5.4 73 3-77 56-128 (330)
66 1z84_A Galactose-1-phosphate u 97.5 0.00069 2.4E-08 70.2 12.9 111 390-500 62-212 (351)
67 3e7a_A PP-1A, serine/threonine 97.4 0.00012 3.9E-09 74.2 5.5 73 3-77 55-127 (299)
68 1aui_A Calcineurin, serine/thr 97.4 0.00016 5.5E-09 77.9 6.1 73 3-77 82-154 (521)
69 3ztv_A NAD nucleotidase, NADN; 97.4 0.0097 3.3E-07 65.6 20.5 110 4-126 13-159 (579)
70 3ll8_A Serine/threonine-protei 97.3 0.00022 7.6E-09 73.7 6.0 73 3-77 69-141 (357)
71 2z1a_A 5'-nucleotidase; metal- 97.3 0.014 4.7E-07 64.0 20.6 111 3-126 29-172 (552)
72 2wdc_A SOXB, sulfur oxidation 97.1 0.012 4E-07 64.7 17.5 172 22-235 110-310 (562)
73 3c9f_A 5'-nucleotidase; 2',3'- 97.1 0.038 1.3E-06 60.6 21.1 205 3-249 15-270 (557)
74 4h2g_A 5'-nucleotidase; dimer, 96.8 0.0044 1.5E-07 67.8 11.0 114 3-126 25-174 (546)
75 1t71_A Phosphatase, conserved 96.0 0.0051 1.7E-07 61.6 5.0 73 1-79 2-77 (281)
76 3jyf_A 2',3'-cyclic nucleotide 95.7 0.073 2.5E-06 54.6 12.4 112 3-127 8-166 (339)
77 3gve_A YFKN protein; alpha-bet 95.7 0.042 1.4E-06 56.5 10.5 112 3-127 11-172 (341)
78 4h1s_A 5'-nucleotidase; hydrol 95.1 0.1 3.5E-06 56.7 11.3 113 3-127 3-153 (530)
79 1m9o_A Tristetraproline; Cys3H 94.4 0.016 5.4E-07 46.1 2.1 56 315-370 14-75 (77)
80 2z06_A Putative uncharacterize 93.5 0.21 7.3E-06 49.0 8.6 105 4-125 1-112 (252)
81 1t70_A Phosphatase; crystal, X 93.1 0.15 5.1E-06 50.2 6.9 106 4-125 1-115 (255)
82 3bl9_A Scavenger mRNA-decappin 91.5 0.59 2E-05 46.8 8.9 85 402-487 150-248 (301)
83 1vlr_A MRNA decapping enzyme; 90.6 0.65 2.2E-05 47.2 8.3 83 404-487 199-295 (350)
84 3d2q_A Muscleblind-like protei 88.3 0.24 8.3E-06 38.6 2.5 53 315-370 8-65 (70)
85 2cqe_A KIAA1064 protein; CCCH 86.9 0.47 1.6E-05 39.6 3.6 47 315-370 15-61 (98)
86 1gup_A Galactose-1-phosphate u 86.8 3.6 0.00012 42.0 11.0 97 389-488 50-174 (348)
87 3d2n_A Muscleblind-like protei 84.8 0.55 1.9E-05 38.0 2.9 53 315-370 11-66 (83)
88 2d9n_A Cleavage and polyadenyl 83.6 0.65 2.2E-05 36.8 2.8 52 315-371 12-63 (77)
89 2rpp_A Muscleblind-like protei 80.9 0.68 2.3E-05 37.9 2.0 53 315-370 19-74 (89)
90 2e5s_A Otthump00000018578; ZF- 80.3 0.42 1.4E-05 39.9 0.6 54 314-370 21-79 (98)
91 2rhk_C Cleavage and polyadenyl 77.5 0.97 3.3E-05 35.4 1.9 52 314-370 17-68 (72)
92 3e0j_A DNA polymerase subunit 70.3 6.7 0.00023 41.8 6.7 118 4-127 201-355 (476)
93 2d00_A V-type ATP synthase sub 65.5 25 0.00086 29.5 8.1 67 1-74 1-83 (109)
94 2yeq_A Apased, PHOD, alkaline 52.8 15 0.00053 39.5 5.8 76 137-212 306-386 (527)
95 3flo_A DNA polymerase alpha su 52.7 30 0.001 36.6 7.8 116 3-125 147-291 (460)
96 3heb_A Response regulator rece 45.4 47 0.0016 27.9 6.8 15 1-15 1-16 (152)
97 3i42_A Response regulator rece 44.5 42 0.0015 27.1 6.2 18 1-18 1-18 (127)
98 2lpm_A Two-component response 42.8 37 0.0013 28.8 5.6 68 1-74 4-89 (123)
99 3jte_A Response regulator rece 41.4 57 0.0019 26.9 6.6 18 1-18 1-18 (143)
100 3kht_A Response regulator; PSI 41.4 58 0.002 26.9 6.7 13 3-15 5-17 (144)
101 3aon_B V-type sodium ATPase su 38.9 50 0.0017 27.9 5.7 65 1-75 1-81 (115)
102 3h1g_A Chemotaxis protein CHEY 35.4 1E+02 0.0035 24.9 7.2 14 1-14 3-16 (129)
103 2pof_A CDP-diacylglycerol pyro 32.2 1.3E+02 0.0046 28.5 8.0 86 422-513 48-145 (227)
104 3t6k_A Response regulator rece 31.0 1.1E+02 0.0038 25.1 6.7 14 1-14 2-15 (136)
105 2zay_A Response regulator rece 30.4 1.4E+02 0.0048 24.5 7.4 69 3-74 8-92 (147)
106 3grc_A Sensor protein, kinase; 30.0 1.2E+02 0.004 24.8 6.7 16 3-18 6-21 (140)
107 3c3m_A Response regulator rece 29.0 2E+02 0.0068 23.3 8.1 14 1-14 1-14 (138)
108 3lua_A Response regulator rece 28.9 1.3E+02 0.0045 24.5 6.8 19 1-19 1-20 (140)
109 3to5_A CHEY homolog; alpha(5)b 26.6 1.4E+02 0.0049 25.3 6.7 15 1-15 9-24 (134)
110 2iuy_A Avigt4, glycosyltransfe 24.4 70 0.0024 31.0 4.8 12 1-12 1-12 (342)
111 2d9m_A Zinc finger CCCH-type d 24.3 17 0.0006 28.0 0.2 30 314-344 21-50 (69)
112 3cg4_A Response regulator rece 23.5 1.9E+02 0.0064 23.4 6.8 15 3-17 7-21 (142)
113 3n53_A Response regulator rece 23.2 1.1E+02 0.0038 25.0 5.3 14 1-14 1-14 (140)
114 3nhm_A Response regulator; pro 22.8 2.1E+02 0.0073 22.7 7.0 14 1-14 1-15 (133)
115 1e2b_A Enzyme IIB-cellobiose; 22.0 1.4E+02 0.0049 24.4 5.5 43 1-44 1-43 (106)
116 3eod_A Protein HNR; response r 21.8 2.6E+02 0.0089 22.1 7.3 14 3-16 7-20 (130)
117 1k66_A Phytochrome response re 21.8 1.8E+02 0.0061 23.6 6.4 15 2-16 5-19 (149)
118 2rdm_A Response regulator rece 21.8 2.4E+02 0.0081 22.4 7.0 14 1-14 3-16 (132)
119 3gl9_A Response regulator; bet 20.6 3.1E+02 0.011 21.6 7.5 13 1-14 1-13 (122)
120 3rqi_A Response regulator prot 20.4 1.3E+02 0.0045 26.3 5.4 14 1-14 5-18 (184)
121 3h3e_A Uncharacterized protein 20.3 2.9E+02 0.0099 26.6 8.2 90 6-116 175-266 (267)
No 1
>3rl5_A Metallophosphoesterase mpped2; alpha-beta fold, metallophosphodiesterase, active site mutan nucleotide polymorphism, hydrolase; 1.26A {Rattus norvegicus} PDB: 3rl3_A* 3rl4_A*
Probab=99.81 E-value=2.1e-19 Score=182.59 Aligned_cols=205 Identities=13% Similarity=0.110 Sum_probs=134.6
Q ss_pred CCEEEEEcCCCCChHHHHHHHHHHhhhcCCCcEEEEecCCCCCCh-hhHHHHHHHhcccCCCC-ccEEEEecCCCCh--H
Q 008885 3 PPRILLCGDVLGRLNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSS-ELLDEFMNYVEGRSEIP-IPTYFIGDYGVGA--A 78 (550)
Q Consensus 3 ~~KILv~GDvhG~~~~l~~kv~~l~~k~GpfD~li~~GDff~~~~-~~~~~~~~~l~g~~~~p-~ptyfv~GNhe~~--~ 78 (550)
.|||++++|+|++...+ +..+.|+||++||++.... .+...+.++|. +++ .++|+|.||||.. .
T Consensus 59 ~mri~~iSD~H~~~~~l---------~i~~~D~vi~aGDl~~~g~~~e~~~~~~~L~---~l~~~~v~~V~GNHD~~~d~ 126 (296)
T 3rl5_A 59 HTRFVCISDTRSRTDGI---------QMPYGDILLHTGDFTELGLPSEVKKFNDWLG---NLPYEYKIVIAGNHELTFDK 126 (296)
T ss_dssp EEEEEEEBCCTTCCTTC---------CCCSCSEEEECSCCSSSCCHHHHHHHHHHHH---TSCCSEEEECCCTTCGGGCH
T ss_pred CeEEEEEeeCCCCcchh---------ccCCCCEEEECCcccCCCCHHHHHHHHHHHH---hCCCCeEEEEcCCcccccch
Confidence 48999999999987542 1235799999999976432 23345666663 444 4589999999964 2
Q ss_pred HHHHHhhccccc--c---Cc----ccCCceecCcEEEcCCCCeEEEcCeEEEEEeCccCCCCCCCCCCCHHHHHH-HHHh
Q 008885 79 KVLLAASKNSAN--Q---GF----KMDGFKVTDNLFWLKGSGNFTLHGLSVAYLSGRQSSEGQQFGTYSQDDVDA-LRAL 148 (550)
Q Consensus 79 ~~l~~l~~~~~~--~---~~----~~~g~ei~~Nl~~Lg~~gv~~i~GlrIa~lgG~~~~~~~~~~~~te~di~~-L~~l 148 (550)
.+++.+...... . +. ..+...+..+++||.. ++++++|++|+|.+++ ++.+.+.|.+++.+. +..+
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~-~~~~i~Gl~i~Gsp~t---P~~~~~~f~~~~~~~~~~~~ 202 (296)
T 3rl5_A 127 EFMADLVKQDYYRFPSVSKLKPEDFDNVQSLLTNSIYLQD-SEVTVKGFRIYGAPWT---PWFNGWGFNLPRGQSLLDKW 202 (296)
T ss_dssp HHHHHHTTSCGGGSHHHHTCCHHHHTTTGGGCTTSEECSS-EEEEETTEEEEEECCB---CC--CCTTBCCTTHHHHHHH
T ss_pred hhhhhhhcccccccccccccccchhhhHhhhcCCeEEecC-CcEEECCEEEEEecCC---CCCCCcCCCcchHHHHHHHH
Confidence 333333100000 0 00 0011234578899995 6668999999986664 223345554433333 3334
Q ss_pred hcCCCCccEEEeCCCCccccccccccccccccCCCCCCcHHHHHHH-HHhCCCEEEEccCCCccccccccCCCCcceeEE
Q 008885 149 AEEPGIVDLFLTNEWPSGVTNKAAASDMLVGISDSSNTDSTVSELV-AEIKPRYHIAGSKGVFYAREPYSNVDAVHVTRF 227 (550)
Q Consensus 149 ~~~~~~vDILLTh~wP~gi~~~~~~~~~~~~~~~~~~Gs~~i~~l~-~~lkPRYhf~Gh~~~f~er~Py~~~~~~~~TRF 227 (550)
.....++||||||.+|+++.+.... . ..++|+..+.+++ ++.+|+||++||.|..+... ....|.|
T Consensus 203 ~~ip~~~dILvTH~PP~g~~D~~~~----~---~~~~G~~~L~~~i~~~~~p~l~v~GH~H~~~~~~------~~g~t~v 269 (296)
T 3rl5_A 203 NLIPEGTDILMTHGPPLGFRDWVPK----E---LQRVGCVELLNTVQRRVRPKLHVFGGIHEGYGTM------TDGYTTY 269 (296)
T ss_dssp TTSCTTCSEEEESSCBTTSSCEEGG----G---TEECSBHHHHHHHHHTTCCSEEEECSCGGGCEEE------ECSSCEE
T ss_pred hhCCCCCeEEEECCCcccccccccc----c---cCcCChHHHHHHHHHhcCCCEEEECCccCCCceE------EECCEEE
Confidence 4456789999999999999764310 0 1368999999999 69999999999988655421 2457999
Q ss_pred EEcCCCCCc
Q 008885 228 LGLAPVGNK 236 (550)
Q Consensus 228 I~La~~g~~ 236 (550)
||.|.++..
T Consensus 270 vNpGs~~~~ 278 (296)
T 3rl5_A 270 INASTCTVS 278 (296)
T ss_dssp EECBCSCTT
T ss_pred EECCcCCcC
Confidence 999999863
No 2
>2yvt_A Hypothetical protein AQ_1956; structural genomics, unknown function, NPPSFA, national PROJ protein structural and functional analyses; 1.60A {Aquifex aeolicus} SCOP: d.159.1.6
Probab=99.75 E-value=1.8e-17 Score=164.05 Aligned_cols=206 Identities=14% Similarity=0.104 Sum_probs=129.1
Q ss_pred CC--CCEEEEEcCCCCChHHHHHHHHHHhhhcCCCcEEEEecCCCCCChhhH-------------------------HHH
Q 008885 1 MS--PPRILLCGDVLGRLNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSSELL-------------------------DEF 53 (550)
Q Consensus 1 M~--~~KILv~GDvhG~~~~l~~kv~~l~~k~GpfD~li~~GDff~~~~~~~-------------------------~~~ 53 (550)
|+ .|||++++|+|++.+.+.+.++.++.. +.|+||++||++....... +.+
T Consensus 1 ~~~~~mri~~iSDlH~~~~~~~~~l~~~~~~--~~D~vi~~GDl~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 78 (260)
T 2yvt_A 1 MGIMPRKVLAIKNFKERFDLLPKLKGVIAEK--QPDILVVVGNILKNEALEKEYERAHLARREPNRKVIHENEHYIIETL 78 (260)
T ss_dssp ---CCCEEEEEECCTTCGGGHHHHHHHHHHH--CCSEEEEESCCCCCHHHHHHHHHHHHTTCCCCTHHHHHHHHHHHHHH
T ss_pred CCcceEEEEEEeecCCChHHHHHHHHHHHhc--CCCEEEECCCCCCccCcchhhhhhhhhhcccchhhhhHHHHHHHHHH
Confidence 55 589999999999987765555555433 4799999999987532200 223
Q ss_pred HHHhcccCCCCccEEEEecCCCChHHH--HHHhhccccccCcccCCceecCcEEEcCCCCe-EEEcCeEEEEEeCccCCC
Q 008885 54 MNYVEGRSEIPIPTYFIGDYGVGAAKV--LLAASKNSANQGFKMDGFKVTDNLFWLKGSGN-FTLHGLSVAYLSGRQSSE 130 (550)
Q Consensus 54 ~~~l~g~~~~p~ptyfv~GNhe~~~~~--l~~l~~~~~~~~~~~~g~ei~~Nl~~Lg~~gv-~~i~GlrIa~lgG~~~~~ 130 (550)
.+++....+.++|+|+|+||||..... .+.+.. .+ +.+|+.+|.. .. ++++|++|+++|+....+
T Consensus 79 ~~~l~~l~~~~~pv~~v~GNHD~~~~~~~~~~~~~---------~~--~~~~~~~l~~-~~~~~~~~~~i~g~~~~~~~~ 146 (260)
T 2yvt_A 79 DKFFREIGELGVKTFVVPGKNDAPLKIFLRAAYEA---------ET--AYPNIRVLHE-GFAGWRGEFEVIGFGGLLTEH 146 (260)
T ss_dssp HHHHHHHHTTCSEEEEECCTTSCCHHHHHHHHHHT---------TT--TCTTEEECSS-EEEEETTTEEEEEECSEEESS
T ss_pred HHHHHHHHhcCCcEEEEcCCCCchhhhhHHHHhhh---------cc--CCcceEEecC-cceEEECCEEEEecCCCcCCC
Confidence 444433345578999999999975321 122221 11 2467788864 44 678899999999875322
Q ss_pred CCCCCCCC----HHHHHHHHHhhcCCCCccEEEeCCCCccc-cccccccccccccCCCCCCcHHHHHHHHHhCCCEEEEc
Q 008885 131 GQQFGTYS----QDDVDALRALAEEPGIVDLFLTNEWPSGV-TNKAAASDMLVGISDSSNTDSTVSELVAEIKPRYHIAG 205 (550)
Q Consensus 131 ~~~~~~~t----e~di~~L~~l~~~~~~vDILLTh~wP~gi-~~~~~~~~~~~~~~~~~~Gs~~i~~l~~~lkPRYhf~G 205 (550)
.-...... -...+.|..+.......+||+||.+|.+. .+.. +.. ....|+..+.+++++.+|+++++|
T Consensus 147 ~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~Il~~H~pp~~~~~d~~-----~~~--~~~~~~~~l~~~~~~~~~~~vl~G 219 (260)
T 2yvt_A 147 EFEEDFVLKYPRWYVEYILKFVNELKPRRLVTIFYTPPIGEFVDRT-----PED--PKHHGSAVVNTIIKSLNPEVAIVG 219 (260)
T ss_dssp CCBSSSSCEEEHHHHHHHGGGGGGSCCCEEEEEESSCCSCSSTTCB-----TTB--SCCCSCHHHHHHHHHHCCSEEEEC
T ss_pred CcCHHHHhhcchhhHHHHHHHHHhcCCCCEEEEECCCccccccccC-----ccc--ccccCcHHHHHHHHHhCCCEEEEC
Confidence 10000111 00002232222223467899999999875 2211 000 136799999999999999999999
Q ss_pred cCCCccccccccCCCCcceeEEEEcCCCCC
Q 008885 206 SKGVFYAREPYSNVDAVHVTRFLGLAPVGN 235 (550)
Q Consensus 206 h~~~f~er~Py~~~~~~~~TRFI~La~~g~ 235 (550)
|.|.... ....|++||.|.++.
T Consensus 220 H~H~~~~--------~~~~~~~in~Gs~~~ 241 (260)
T 2yvt_A 220 HVGKGHE--------LVGNTIVVNPGEFEE 241 (260)
T ss_dssp SSCCEEE--------EETTEEEEECCBGGG
T ss_pred CccCCcE--------EeCCEEEEeCCCCCC
Confidence 9983322 134588999999874
No 3
>1uf3_A Hypothetical protein TT1561; metallo-dependent phosphatases, structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.10A {Thermus thermophilus} SCOP: d.159.1.6
Probab=99.74 E-value=2.7e-17 Score=158.84 Aligned_cols=194 Identities=18% Similarity=0.169 Sum_probs=125.0
Q ss_pred CC--CCEEEEEcCCCCChHHHHHHHHHHhhhcCCCcEEEEecCCCCCC--hhhHHHHHHHhcccCCCCccEEEEecCCCC
Q 008885 1 MS--PPRILLCGDVLGRLNQLFKRVQSVNKSAGPFDAVLCVGQFFPDS--SELLDEFMNYVEGRSEIPIPTYFIGDYGVG 76 (550)
Q Consensus 1 M~--~~KILv~GDvhG~~~~l~~kv~~l~~k~GpfD~li~~GDff~~~--~~~~~~~~~~l~g~~~~p~ptyfv~GNhe~ 76 (550)
|. +|||+++||+|+++..+-+.++.+++. ++|+||++||++... .....++.+.+ .+.++|+|+|+||||.
T Consensus 1 ~~~~~mri~~iSD~H~~~~~~~~~~~~~~~~--~~D~vi~~GDl~~~~~~~~~~~~~~~~l---~~~~~pv~~v~GNHD~ 75 (228)
T 1uf3_A 1 MRRTVRYILATSNPMGDLEALEKFVKLAPDT--GADAIALIGNLMPKAAKSRDYAAFFRIL---SEAHLPTAYVPGPQDA 75 (228)
T ss_dssp CCCCCCEEEEEECCTTCHHHHHHHHTHHHHH--TCSEEEEESCSSCTTCCHHHHHHHHHHH---GGGCSCEEEECCTTSC
T ss_pred CccceEEEEEEeeccCCHHHHHHHHHHHhhc--CCCEEEECCCCCCCCCCHHHHHHHHHHH---HhcCCcEEEECCCCCc
Confidence 65 479999999999987654444444332 479999999997643 12122344444 4567899999999997
Q ss_pred hHHHHHHhhccccccCcccCCceecCcEEEcCCCCeEEEc-CeEEEEEeCccCCCCCCCCCCCHHHH--------HHHHH
Q 008885 77 AAKVLLAASKNSANQGFKMDGFKVTDNLFWLKGSGNFTLH-GLSVAYLSGRQSSEGQQFGTYSQDDV--------DALRA 147 (550)
Q Consensus 77 ~~~~l~~l~~~~~~~~~~~~g~ei~~Nl~~Lg~~gv~~i~-GlrIa~lgG~~~~~~~~~~~~te~di--------~~L~~ 147 (550)
... +.+... + ....+.+++++|.. ..++++ +++|++++|....+. .++++++ ..+..
T Consensus 76 ~~~--~~~~~~-~------~~~~~~~~~~~l~~-~~~~~~~~~~i~g~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~ 141 (228)
T 1uf3_A 76 PIW--EYLREA-A------NVELVHPEMRNVHE-TFTFWRGPYLVAGVGGEIADEG----EPEEHEALRYPAWVAEYRLK 141 (228)
T ss_dssp SHH--HHHHHH-H------HHHHHCTTEEECBT-SEEEETTTEEEEEECSEEESSS----CCBSSSSCEEEHHHHHHHHG
T ss_pred hhH--HHHHhh-h------hhhccCcceEEccc-ceEeeCCCcEEecCCCCcCCCC----ccChhhcccchhhhHHHHHH
Confidence 542 222110 0 00112356677763 556777 999999998653221 1222211 11111
Q ss_pred -hhcCCCCccEEEeCCCCccccccccccccccccCCCCCCcHHHHHHHHHhCCCEEEEccCCCccccccccCCCCcceeE
Q 008885 148 -LAEEPGIVDLFLTNEWPSGVTNKAAASDMLVGISDSSNTDSTVSELVAEIKPRYHIAGSKGVFYAREPYSNVDAVHVTR 226 (550)
Q Consensus 148 -l~~~~~~vDILLTh~wP~gi~~~~~~~~~~~~~~~~~~Gs~~i~~l~~~lkPRYhf~Gh~~~f~er~Py~~~~~~~~TR 226 (550)
+.......+||+||.+|.+.. . ...|+..+.++++..+|+++++||.|.... ....|+
T Consensus 142 ~l~~~~~~~~il~~H~p~~~~~---~----------~~~~~~~~~~~~~~~~~~~~~~GH~H~~~~--------~~~~~~ 200 (228)
T 1uf3_A 142 ALWELKDYPKIFLFHTMPYHKG---L----------NEQGSHEVAHLIKTHNPLLVLVAGKGQKHE--------MLGASW 200 (228)
T ss_dssp GGGGSCSCCEEEEESSCBCBTT---T----------BTTSBHHHHHHHHHHCCSEEEECCSSCEEE--------EETTEE
T ss_pred HHHhCCCCCeEEEEccCcccCC---c----------cccCHHHHHHHHHHhCCCEEEEcccccCcc--------ccCCce
Confidence 222234589999999998751 1 246889999999999999999999983332 234689
Q ss_pred EEEcCCCC
Q 008885 227 FLGLAPVG 234 (550)
Q Consensus 227 FI~La~~g 234 (550)
+||.|+++
T Consensus 201 ~in~Gs~~ 208 (228)
T 1uf3_A 201 VVVPGDLS 208 (228)
T ss_dssp EEECCBGG
T ss_pred EEEecccC
Confidence 99999986
No 4
>3imi_A HIT family protein; structural genomics, infectious diseases for structural genomics of infectious diseases, unknown FUN csgid; 2.01A {Bacillus anthracis str} SCOP: d.13.1.1
Probab=99.57 E-value=2.9e-15 Score=137.18 Aligned_cols=105 Identities=18% Similarity=0.188 Sum_probs=82.4
Q ss_pred ccCCCCCCcccCCCC-CCCcceEEEECCEEEEEecCCCCCCCeEEEEeccccCCCCCCCHHHHHHHHHHHHHHHHHHh--
Q 008885 384 SANRSKECWFCLSSP-SVESHLIVSVGEYYYCALPKGPLVEDHVLVIPVEHVPNTISTSPECEKELGRFQNSLMMYYK-- 460 (550)
Q Consensus 384 ~~~~~~~C~FC~~~~-~~~~hliis~g~~~yl~l~kgpl~~gH~lIiP~~H~~s~~~l~~~~~~Ei~~~~~~L~~~~~-- 460 (550)
+...+++|.||.+.. ..+ ..||+.++.++++++..|..|||+||||.+|++++.+|+++++.+|....+.+.+.+.
T Consensus 4 ~~~~m~~CifC~i~~~e~~-~~iV~e~~~~~a~~d~~p~~pgh~lViPk~H~~~l~dL~~~e~~~l~~~~~~v~~~l~~~ 82 (147)
T 3imi_A 4 MNHTADNCIFCKIIDGQIL-CSKVYEDEHVLAFLDISQVTKGHTLVIPKVHKQDIFALTPEIASHIFSVVPKIANAIKAE 82 (147)
T ss_dssp -CCCGGGCHHHHHHTTSSC-CCEEEECSSEEEEECTTCSSTTCEEEEESSCCCSGGGCCHHHHHHHHHTHHHHHHHHHHH
T ss_pred hhcccCCCcCcccccCCCc-CCEEEECCCEEEEEcCCCCCCcEEEEEEeeccCChhhCCHHHHHHHHHHHHHHHHHHHHh
Confidence 344567899998743 344 4689999999999999999999999999999999999999999998877666665544
Q ss_pred --hcCCceEEEe--ecCCCcCeEEEEEeecCCC
Q 008885 461 --NQGKEAVFFE--WLSKRGTHANLQAVPIPTS 489 (550)
Q Consensus 461 --~~~~~~v~~E--~~~~~~~H~hi~~vPvp~~ 489 (550)
..|+++++.. ...+.+.|+|+|+||+...
T Consensus 83 ~~~~~~ni~~n~g~~aGq~v~HlHiHiiPR~~~ 115 (147)
T 3imi_A 83 FNPVGFNLLNNNGEKAGQTVFHFHLHLIPRYGE 115 (147)
T ss_dssp HCCSEEEEEEEESGGGTCCSSSCCEEEEEECST
T ss_pred cCCCCEEEEEeCCcccCCCcCEEEEEEeCCccC
Confidence 4455655554 2345578999999998653
No 5
>1y23_A HIT, histidine triad protein; HIT protein, PKCI-1, cell-cycle regulation, NYSGXRC, structural genomics, protein structure initiative; 2.30A {Bacillus subtilis} SCOP: d.13.1.1
Probab=99.57 E-value=1.8e-15 Score=138.03 Aligned_cols=101 Identities=18% Similarity=0.220 Sum_probs=79.3
Q ss_pred CCCCcccCCC-CCCCcceEEEECCEEEEEecCCCCCCCeEEEEeccccCCCCCCCHHHHHHHHHHHHHHHHH----Hhhc
Q 008885 388 SKECWFCLSS-PSVESHLIVSVGEYYYCALPKGPLVEDHVLVIPVEHVPNTISTSPECEKELGRFQNSLMMY----YKNQ 462 (550)
Q Consensus 388 ~~~C~FC~~~-~~~~~hliis~g~~~yl~l~kgpl~~gH~lIiP~~H~~s~~~l~~~~~~Ei~~~~~~L~~~----~~~~ 462 (550)
+++|+||.+. ...+ ..||+.++.++++++.+|..+||+||||.+|++++.+|+++++.+|....+.+.+. |...
T Consensus 4 ~~~C~fC~i~~~e~~-~~iv~e~~~~~a~~~~~p~~pgh~LViPk~h~~~l~dL~~~~~~~l~~~~~~v~~~l~~~~~~~ 82 (145)
T 1y23_A 4 AENCIFCKIIAGDIP-SAKVYEDEHVLAFLDISQVTKGHTLVIPKTHIENVYEFTDELAKQYFHAVPKIARAIRDEFEPI 82 (145)
T ss_dssp -CCCHHHHHHHTSSC-CCEEEECSSEEEEECTTCSSTTCEEEEESSCCSSGGGCCHHHHHTTTTHHHHHHHHHHHHHCCS
T ss_pred CCCCcCCccccCCCC-CCEEEECCCEEEEECCCCCCCCeEEEEEhhhhhhHHhCCHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 4579999864 3333 47889999999999999999999999999999999999999988887655555544 4445
Q ss_pred CCceEEEe--ecCCCcCeEEEEEeecCCC
Q 008885 463 GKEAVFFE--WLSKRGTHANLQAVPIPTS 489 (550)
Q Consensus 463 ~~~~v~~E--~~~~~~~H~hi~~vPvp~~ 489 (550)
|+++++.. ...+...|+|+|+||+...
T Consensus 83 ~~ni~~n~g~~~g~~v~HlH~HiiPr~~~ 111 (145)
T 1y23_A 83 GLNTLNNNGEKAGQSVFHYHMHIIPRYGK 111 (145)
T ss_dssp EEEEEEEESGGGTCCSSSCCEEEEEECST
T ss_pred CEEEEEcCCcCCCCCcCEEEEEEEccccC
Confidence 66666655 2334578999999997654
No 6
>3o0m_A HIT family protein; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, hydrola structural genomics; HET: AMP; 1.90A {Mycobacterium smegmatis str}
Probab=99.56 E-value=4.5e-15 Score=136.27 Aligned_cols=102 Identities=20% Similarity=0.283 Sum_probs=80.6
Q ss_pred CCCCcccCCCCCCCcceEEEECCEEEEEecCCCCCCCeEEEEeccccCCCCCCCHHHHHHHHHHHHHHHHHHhhc--C--
Q 008885 388 SKECWFCLSSPSVESHLIVSVGEYYYCALPKGPLVEDHVLVIPVEHVPNTISTSPECEKELGRFQNSLMMYYKNQ--G-- 463 (550)
Q Consensus 388 ~~~C~FC~~~~~~~~hliis~g~~~yl~l~kgpl~~gH~lIiP~~H~~s~~~l~~~~~~Ei~~~~~~L~~~~~~~--~-- 463 (550)
+.+|.||.+...-....||+.++.++++++..|..|||+||||.+|+.++.+|+++++.+|....+.+.+.+++. +
T Consensus 4 m~~CiFC~i~~~e~~~~iv~e~~~~~af~d~~p~~pgh~lViPk~H~~~l~dl~~~~~~~l~~~~~~v~~~l~~~~~~~~ 83 (149)
T 3o0m_A 4 SMSCVFCAIVSGDAPAIRIYEDENFLGILDIRPFTRGHTLVIPKTHTVDLTDTPPETVAGMAAVGQRIARAARESGLHAD 83 (149)
T ss_dssp TTTCHHHHHHTTSSCCCEEEECSSEEEEECSSCSSTTCEEEEESSCCCSTTTSCHHHHHHHHHHHHHHHHHHHHSTTCCS
T ss_pred CCCCccCccccCCCCCCEEEECCCEEEEEcCCCCCCCeEEEEechhhCCHhHCCHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 568999986433223578999999999999999999999999999999999999999999999888888876654 2
Q ss_pred -CceEEEe--ecCCCcCeEEEEEeecCCC
Q 008885 464 -KEAVFFE--WLSKRGTHANLQAVPIPTS 489 (550)
Q Consensus 464 -~~~v~~E--~~~~~~~H~hi~~vPvp~~ 489 (550)
+++++.. ...+.+.|+|+|+||+...
T Consensus 84 ~~ni~~n~g~~aGq~v~HlHiHiiPR~~~ 112 (149)
T 3o0m_A 84 GNNIAINDGKAAFQTVFHIHLHVVPRRNG 112 (149)
T ss_dssp EEEEECCCSGGGTCCSSSCCEEEEEECTT
T ss_pred ceEEEEecCCCCCCccceEEEEEECCccC
Confidence 3322222 1234478999999997554
No 7
>3lb5_A HIT-like protein involved in cell-cycle regulatio; niaid, seattle structural genomics center for infectious DIS ssgcid, histidine triad; 1.90A {Bartonella henselae}
Probab=99.56 E-value=7.3e-15 Score=136.59 Aligned_cols=102 Identities=14% Similarity=0.104 Sum_probs=81.8
Q ss_pred CCCCcccCCCCCCCcceEEEECCEEEEEecCCCCCCCeEEEEeccccCCCCCCCHHHHHHHHHHHHHHHHHH----hhcC
Q 008885 388 SKECWFCLSSPSVESHLIVSVGEYYYCALPKGPLVEDHVLVIPVEHVPNTISTSPECEKELGRFQNSLMMYY----KNQG 463 (550)
Q Consensus 388 ~~~C~FC~~~~~~~~hliis~g~~~yl~l~kgpl~~gH~lIiP~~H~~s~~~l~~~~~~Ei~~~~~~L~~~~----~~~~ 463 (550)
.++|+||.+........||+.++.+++++|..|..+||+||||.+|++++.+|+++++.+|....+.+.+.+ ...|
T Consensus 27 ~~~CiFC~i~~~e~p~~iV~e~e~~~af~d~~P~~pgH~LViPk~H~~~l~dL~~ee~~~l~~~~~~v~~~l~~~~~~~g 106 (161)
T 3lb5_A 27 DNNNIFAKLIRNEIPSVRVYEDDDVIAFMDIMPQAPGHTLVIPKKGSRNLLDADTETLFPVIKAVQKIAKAVKKAFQADG 106 (161)
T ss_dssp CTTSHHHHHHTTSSCCCEEEECSSEEEEECSSCSSTTCEEEEESSCCSSTTTSCHHHHHHHHHHHHHHHHHHHHHHTCSE
T ss_pred CCCCcccccccCCCCccEEEECCCEEEEECCCcCCCcEEEEEEeeccchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 568999987543334578999999999999999999999999999999999999999998887776666554 4456
Q ss_pred CceEEEe--ecCCCcCeEEEEEeecCCC
Q 008885 464 KEAVFFE--WLSKRGTHANLQAVPIPTS 489 (550)
Q Consensus 464 ~~~v~~E--~~~~~~~H~hi~~vPvp~~ 489 (550)
+++++.. ...+.+.|+|+|+||+...
T Consensus 107 ~ni~~n~g~~aGq~V~HlHiHiiPR~~~ 134 (161)
T 3lb5_A 107 ITVMQFNEAASQQTVYHLHFHIIPRMEG 134 (161)
T ss_dssp EEEEEEESGGGTCCSCSCCEEEEEECTT
T ss_pred EEEEEecCcccCCCCCEEEEEEEcccCC
Confidence 6666555 2344578999999998553
No 8
>3n1s_A HIT-like protein HINT; histidine triad nucleotide binding protein, GMP, hydro; HET: 5GP; 1.45A {Escherichia coli} SCOP: d.13.1.0 PDB: 3n1t_A*
Probab=99.56 E-value=4.5e-15 Score=131.13 Aligned_cols=98 Identities=18% Similarity=0.195 Sum_probs=76.1
Q ss_pred CCCcccCCC-CCCCcceEEEECCEEEEEecCCCCCCCeEEEEeccccCCCCCCCHHHHHHHHHHHHHHHHHHh-----hc
Q 008885 389 KECWFCLSS-PSVESHLIVSVGEYYYCALPKGPLVEDHVLVIPVEHVPNTISTSPECEKELGRFQNSLMMYYK-----NQ 462 (550)
Q Consensus 389 ~~C~FC~~~-~~~~~hliis~g~~~yl~l~kgpl~~gH~lIiP~~H~~s~~~l~~~~~~Ei~~~~~~L~~~~~-----~~ 462 (550)
++|.||.+- .+.+ ..||+.++.+|++++..|..|||+||||.+|++++.+|+++.+.++..+.+.+++..+ ..
T Consensus 3 ~~CiFC~I~~ge~~-~~iv~ede~~~af~d~~P~~pgH~LViPk~Hv~~l~dL~~~e~~~l~~l~~~~~~v~~~~~~~~~ 81 (119)
T 3n1s_A 3 EETIFSKIIRREIP-SDIVYQDDLVTAFRDISPQAPTHILIIPNILIPTVNDVSAEHEQALGRMITVAAKIAEQEGIAED 81 (119)
T ss_dssp CCCHHHHHHTTSSC-CCEEEECSSEEEEECSSCSSSEEEEEEESSCCCSGGGCCGGGHHHHHHHHHHHHHHHHHTTCTTT
T ss_pred CCChhhhhhcCCCc-CCEEEECCCEEEEECCCCCCCCeEEEEehhHhCCHhHcCHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 579999864 3333 4789999999999999999999999999999999999999977666665555544443 34
Q ss_pred CCceEEEe--ecCCCcCeEEEEEeecC
Q 008885 463 GKEAVFFE--WLSKRGTHANLQAVPIP 487 (550)
Q Consensus 463 ~~~~v~~E--~~~~~~~H~hi~~vPvp 487 (550)
|+++++.. ...+.+.|+|+|+||..
T Consensus 82 g~ni~~n~g~~agq~V~HlH~Hiipr~ 108 (119)
T 3n1s_A 82 GYRLIMNTNRHGGQEVYHIHMHLLGGR 108 (119)
T ss_dssp CEEEEEEEHHHHTCCSSSCCEEEEESS
T ss_pred CeEEEEeCCCCcCCCcCEEEEEEeCCc
Confidence 55655554 24556889999999963
No 9
>2oik_A Histidine triad (HIT) protein; HIT-like fold, structural genomics, joint center for structu genomics, JCSG; HET: MSE; 1.65A {Methylobacillus flagellatus} SCOP: d.13.1.1
Probab=99.55 E-value=2.3e-14 Score=132.19 Aligned_cols=98 Identities=13% Similarity=0.106 Sum_probs=77.6
Q ss_pred CCCCcccCCCCCCCcceEEEECCEEEEEecCCCCCCCeEEEEeccccCCCCCCCHHHHHHHHHHHHHHHHHHhh-cCCce
Q 008885 388 SKECWFCLSSPSVESHLIVSVGEYYYCALPKGPLVEDHVLVIPVEHVPNTISTSPECEKELGRFQNSLMMYYKN-QGKEA 466 (550)
Q Consensus 388 ~~~C~FC~~~~~~~~hliis~g~~~yl~l~kgpl~~gH~lIiP~~H~~s~~~l~~~~~~Ei~~~~~~L~~~~~~-~~~~~ 466 (550)
+.+|+||...+ ..||+.+++++++++.+|..|||+||||++|+.++.+|+++++.+|....+.+.+.+.+ .+...
T Consensus 9 ~~~C~FC~~~~----~~iv~e~~~~~a~~d~~p~~pgh~LViPk~H~~~l~dL~~~~~~~l~~~~~~v~~~l~~~~~~~g 84 (154)
T 2oik_A 9 HKNCELCTTAG----GEILWQDALCRVVHVENQDYPGFCRVILNRHVKEMSDLRPAERDHLMLVVFAVEEAVREVMRPDK 84 (154)
T ss_dssp CTTCHHHHSCC----SEEEEECSSEEEEECCCTTCTTCEEEEESSCCSCGGGSCHHHHHHHHHHHHHHHHHHHHHHCCSE
T ss_pred CCCCccCCCCC----CeEEEECCcEEEEEcCCCCCCeEEEEEecCCcCChHHCCHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 45799998543 47899999999999999999999999999999999999999998888777766666553 23322
Q ss_pred EEEeecCCCcCeEEEEEeecCCC
Q 008885 467 VFFEWLSKRGTHANLQAVPIPTS 489 (550)
Q Consensus 467 v~~E~~~~~~~H~hi~~vPvp~~ 489 (550)
+.+....+...|+|+|+||+...
T Consensus 85 ~ni~~~gq~v~HlHiHiiPr~~~ 107 (154)
T 2oik_A 85 INLASLGNMTPHVHWHVIPRFKR 107 (154)
T ss_dssp EEEEECCSSSCSCEEEEEEECTT
T ss_pred EEhHHhCCCCCEEEEEEeCCCCC
Confidence 22222445678999999998654
No 10
>3p0t_A Uncharacterized protein; ssgcid, HIT-like protein, mycobacerium paratuberculosis, STR genomics; 1.90A {Mycobacterium avium subsp}
Probab=99.54 E-value=1.1e-14 Score=131.72 Aligned_cols=98 Identities=13% Similarity=0.076 Sum_probs=80.1
Q ss_pred CCcccCCC-CCCCcceEEEECCEEEEEecCCCCCCCeEEEEeccccCCCCCCCHHHHHHHHHHHHHHHHHHh-hcCCceE
Q 008885 390 ECWFCLSS-PSVESHLIVSVGEYYYCALPKGPLVEDHVLVIPVEHVPNTISTSPECEKELGRFQNSLMMYYK-NQGKEAV 467 (550)
Q Consensus 390 ~C~FC~~~-~~~~~hliis~g~~~yl~l~kgpl~~gH~lIiP~~H~~s~~~l~~~~~~Ei~~~~~~L~~~~~-~~~~~~v 467 (550)
+|.||.+. .+.+ ..+|+.++.++++++..|..+||+||||.+|+.++.+|+++++.+|....+.+.+.+. ..+..-+
T Consensus 6 ~CiFC~i~~~e~p-~~iV~e~~~~~af~d~~P~~pgH~LViPk~H~~~l~dL~~~e~~~l~~~~~~v~~~l~~~~~~~~~ 84 (138)
T 3p0t_A 6 ASIFTKIINRELP-GRFVYEDDDVVAFLTIEPMTQGHTLVVPREEIDNWQDVDSAAFNRVMGVSQLIGKAVCKAFRTERS 84 (138)
T ss_dssp HHHHHHHHTTSSC-CCEEEECSSEEEEECSSCSSTTCEEEEESSCCCCGGGSCHHHHHHHHHHHHHHHHHHHHHHTCSEE
T ss_pred CChhhHHhcCCCC-cCEEEeCCCEEEEecCCCCCCcEEEEEEhHHhCchhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 69999754 3444 4688999999999999999999999999999999999999999999988887777655 3455444
Q ss_pred EEeecCCCcCeEEEEEeecCC
Q 008885 468 FFEWLSKRGTHANLQAVPIPT 488 (550)
Q Consensus 468 ~~E~~~~~~~H~hi~~vPvp~ 488 (550)
.+....+.++|+|+|+||+..
T Consensus 85 n~~~~gq~v~HlH~HiiPr~~ 105 (138)
T 3p0t_A 85 GLIIAGLEVPHLHVHVFPTRS 105 (138)
T ss_dssp EEEECCSSCSSCCEEEEEESC
T ss_pred cEEECCcccCEEEEEEecccc
Confidence 454345567899999999754
No 11
>3l7x_A SMU.412C, putative HIT-like protein involved in cell-cycle regulation; 1.70A {Streptococcus mutans}
Probab=99.53 E-value=8.7e-15 Score=137.57 Aligned_cols=102 Identities=22% Similarity=0.208 Sum_probs=80.3
Q ss_pred CCCCCcccCCCCCCCcceEEEECCEEEEEecCCCCCCCeEEEEeccccCCCCCCCHHHHHHHHHHHHHHHHHH----hhc
Q 008885 387 RSKECWFCLSSPSVESHLIVSVGEYYYCALPKGPLVEDHVLVIPVEHVPNTISTSPECEKELGRFQNSLMMYY----KNQ 462 (550)
Q Consensus 387 ~~~~C~FC~~~~~~~~hliis~g~~~yl~l~kgpl~~gH~lIiP~~H~~s~~~l~~~~~~Ei~~~~~~L~~~~----~~~ 462 (550)
.+++|+||.+........||+.++.+++++|..|..|||+||||.+|+.++.+|+++++.+|....+.+.+.+ ...
T Consensus 34 ~m~~CiFC~Ii~~e~p~~iV~e~e~~~afld~~P~~pgH~LVIPkrHv~~l~dL~~ee~~~L~~~~~~v~~~l~~~~~~~ 113 (173)
T 3l7x_A 34 SMNDCLFCKIVAGDIPSSKVYEDEDVLAFLDISQATKGHTLVIPKEHVRNALEMTQTQAANLFARIPKIARALQKATKAD 113 (173)
T ss_dssp CCTTCHHHHHHHTSSCCCEEEECSSEEEEECTTCSSTTCEEEEESSCCSCGGGCCHHHHHHHHHTHHHHHHHHHHHHTCS
T ss_pred CCCCCcccccccCCCCceEEEECCCEEEEEcCCCCCCcEEEEEeccccCChhhCCHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 3678999987533223468999999999999999999999999999999999999999988887666555544 444
Q ss_pred CCceEEEe--ecCCCcCeEEEEEeecCC
Q 008885 463 GKEAVFFE--WLSKRGTHANLQAVPIPT 488 (550)
Q Consensus 463 ~~~~v~~E--~~~~~~~H~hi~~vPvp~ 488 (550)
++++++.. ...+...|+|+|+||+..
T Consensus 114 g~ni~~n~g~~aGq~V~HlHiHiIPR~~ 141 (173)
T 3l7x_A 114 GLNIINNNEETAGQTVFHAHVHLVPRFA 141 (173)
T ss_dssp EEEEEECCSGGGTCCSCSCCEEEEEECC
T ss_pred CEEEEEecCcccCCCcCEEEEEEEeccc
Confidence 55655544 233457899999999865
No 12
>4egu_A Histidine triad (HIT) protein; structural genomics, center for structural genomics of infec diseases, csgid, HIT domain, unknown function; HET: 5GP; 0.95A {Clostridium difficile}
Probab=99.53 E-value=1.1e-14 Score=128.49 Aligned_cols=99 Identities=14% Similarity=0.129 Sum_probs=74.6
Q ss_pred CCCcccCCCCCCCcceEEEECCEEEEEecCCCCCCCeEEEEeccccCCCCCCCHHHHHHHHHHHHHHHHHHh-----hcC
Q 008885 389 KECWFCLSSPSVESHLIVSVGEYYYCALPKGPLVEDHVLVIPVEHVPNTISTSPECEKELGRFQNSLMMYYK-----NQG 463 (550)
Q Consensus 389 ~~C~FC~~~~~~~~hliis~g~~~yl~l~kgpl~~gH~lIiP~~H~~s~~~l~~~~~~Ei~~~~~~L~~~~~-----~~~ 463 (550)
.+|.||.+...-....||+.++.+++++|..|..|||+||||.+|++++.+|+++.+.++....+.+.++.+ ..|
T Consensus 4 ~~C~FC~i~~~e~~~~iv~e~e~~~af~d~~P~~pgH~LViPk~H~~~l~dL~~~e~~~l~~~~~~~~~~~~~~~~~~~~ 83 (119)
T 4egu_A 4 MDCIFCKIANGEIPSTKVYEDDRVLAFNDLNPVAPYHILVVPKKHYDSLIDIPDKEMDIVSHIHVVINKIAKEKGFDQTG 83 (119)
T ss_dssp TTCHHHHHHTTSSCCCEEEECSSEEEEECSSCSSSEEEEEEESSCCSSGGGSCGGGTHHHHHHHHHHHHHHHHHTHHHHC
T ss_pred CCccCeecccCCCCCCEEEECCCEEEEECCCCCCCceEEEEechhhCCHhHCCHhHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 479999864332235789999999999999999999999999999999999998865555555444443333 346
Q ss_pred CceEEEe--ecCCCcCeEEEEEeecC
Q 008885 464 KEAVFFE--WLSKRGTHANLQAVPIP 487 (550)
Q Consensus 464 ~~~v~~E--~~~~~~~H~hi~~vPvp 487 (550)
+++++.. ...+...|+|+|+||..
T Consensus 84 ~ni~~n~g~~agq~v~HlH~Hiip~~ 109 (119)
T 4egu_A 84 FRVINNCGSDGGQEVKHLHYHILAGK 109 (119)
T ss_dssp EEEEEEETTTTTCCSCSCCEEEEESS
T ss_pred EEEEEeCCCCCCCCcCEEEEEEeCCc
Confidence 6665554 23345789999999974
No 13
>3oj7_A Putative histidine triad family protein; hydrolase, structural genomics, seattle structural genomics for infectious disease, ssgcid; 1.40A {Entamoeba histolytica} SCOP: d.13.1.0 PDB: 3omf_A* 3oxk_A*
Probab=99.52 E-value=7.5e-15 Score=129.18 Aligned_cols=99 Identities=19% Similarity=0.253 Sum_probs=73.1
Q ss_pred CCC-CcccCCCCCCCcceEEEECCEEEEEecCCCCCCCeEEEEeccccCCCCCCCHHHHHHHHHHHHHHHHHHhh---cC
Q 008885 388 SKE-CWFCLSSPSVESHLIVSVGEYYYCALPKGPLVEDHVLVIPVEHVPNTISTSPECEKELGRFQNSLMMYYKN---QG 463 (550)
Q Consensus 388 ~~~-C~FC~~~~~~~~hliis~g~~~yl~l~kgpl~~gH~lIiP~~H~~s~~~l~~~~~~Ei~~~~~~L~~~~~~---~~ 463 (550)
+++ |.||.+........||+.++.++++++..|..+||+||||.+|++++.+|+++.++++....+.+.++.++ .|
T Consensus 5 m~~~CiFC~i~~~e~~~~iv~e~~~~~af~d~~P~~pgH~LViPk~H~~~l~dL~~~e~~~l~~l~~~~~~~~~~~~~~g 84 (117)
T 3oj7_A 5 MADSCIFCKIAQKQIPSTIVYEDDEIFAFKDINPIAPIHILVIPKQHIASLNEITEENEAFIGKVLYKVSLIGKKECPEG 84 (117)
T ss_dssp ----CHHHHHHTTSSCCCEEEECSSEEEEECSSCSSSEEEEEEESSCCCSGGGCCTTTHHHHHHHHHHHHHHHHHHCTTC
T ss_pred cCCCCcccccccCCCCCCEEEECCcEEEEECCCCCCCceEEEEechHhCCHHHCCHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 345 99998743323457999999999999999999999999999999999999988777777666655555443 24
Q ss_pred CceEEEe--ecCCCcCeEEEEEeec
Q 008885 464 KEAVFFE--WLSKRGTHANLQAVPI 486 (550)
Q Consensus 464 ~~~v~~E--~~~~~~~H~hi~~vPv 486 (550)
+++++.. ...+...|+|+|+||.
T Consensus 85 ~ni~~n~g~~agq~v~H~H~Hiipr 109 (117)
T 3oj7_A 85 YRVVNNIGEDAGQTVKHIHFHILGG 109 (117)
T ss_dssp EEEECCCSTTTTCCSSSCCEEEEES
T ss_pred eEEEEcCCCCCCeeeeEEEEEEeCC
Confidence 4443332 1234468999999996
No 14
>3r6f_A HIT family protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, protozoan parasite; 1.85A {Encephalitozoon cuniculi}
Probab=99.52 E-value=2.1e-15 Score=136.23 Aligned_cols=100 Identities=18% Similarity=0.260 Sum_probs=81.7
Q ss_pred CCCCcccCCCCCCCcceEEEECCEEEEEecCCCCCCCeEEEEeccccCCCCCCCHHHHHHHHHHHHHHHHHHhhcCCceE
Q 008885 388 SKECWFCLSSPSVESHLIVSVGEYYYCALPKGPLVEDHVLVIPVEHVPNTISTSPECEKELGRFQNSLMMYYKNQGKEAV 467 (550)
Q Consensus 388 ~~~C~FC~~~~~~~~hliis~g~~~yl~l~kgpl~~gH~lIiP~~H~~s~~~l~~~~~~Ei~~~~~~L~~~~~~~~~~~v 467 (550)
+++|.||.+.. ....||+.++.++++++..|..+||+||||.+|+.++.+|+++++.+|....+.+.+.+...+++++
T Consensus 5 ~~~C~fC~i~~--~~~~iv~e~~~~~af~d~~p~~pgh~lViPk~H~~~l~dL~~~~~~~l~~~~~~v~~~~~~~~~ni~ 82 (135)
T 3r6f_A 5 MEGCIFCTLYR--KGANIIYETDRLFALIDRYPLSKGHFLVIPKAHHPYLHNYKPEELSGVLDTIRHLVQKFGFERYNIL 82 (135)
T ss_dssp -CCCHHHHHHH--HCCSCCEECSSEEEEECSSCSSTTCEEEEESSCCSSGGGSCGGGGTTHHHHHHHHHHHHTCCSEEEE
T ss_pred CCCCcCccccc--CCceEEEECCCEEEEECCCCCCCCeEEEEEhhHhCCHhHCCHHHHHHHHHHHHHHHHHhCCCCeEEE
Confidence 56899998743 3346889999999999999999999999999999999999999999999988888888876665544
Q ss_pred EEeecCCCcCeEEEEEeecCCC
Q 008885 468 FFEWLSKRGTHANLQAVPIPTS 489 (550)
Q Consensus 468 ~~E~~~~~~~H~hi~~vPvp~~ 489 (550)
+.....+...|+|+|+||+...
T Consensus 83 ~n~g~gq~v~HlH~HiiPR~~~ 104 (135)
T 3r6f_A 83 QNNGNHQEVFHVHFHVIPFVSA 104 (135)
T ss_dssp CCSSSSCSSSSCCEEEEECCBT
T ss_pred EEcCCCCCccEEEEEEeccccC
Confidence 3331234478999999998654
No 15
>3ano_A AP-4-A phosphorylase; diadenosine polyphosphate, HIT transferase; HET: PG4; 1.89A {Mycobacterium tuberculosis}
Probab=99.52 E-value=1e-14 Score=141.71 Aligned_cols=102 Identities=22% Similarity=0.186 Sum_probs=81.2
Q ss_pred CCCCcccCCCCC-CCcceEEEECCEEEEEecCCCCCCCeEEEEeccccCCCCCCCHHHHHHHHHHHHHHHHHHhh----c
Q 008885 388 SKECWFCLSSPS-VESHLIVSVGEYYYCALPKGPLVEDHVLVIPVEHVPNTISTSPECEKELGRFQNSLMMYYKN----Q 462 (550)
Q Consensus 388 ~~~C~FC~~~~~-~~~hliis~g~~~yl~l~kgpl~~gH~lIiP~~H~~s~~~l~~~~~~Ei~~~~~~L~~~~~~----~ 462 (550)
.++|+||.+... .....||+.++.+|++++.+|+++||+||||++|++++.+|+++++.+|..+.+.+.+.+++ .
T Consensus 68 ~~~CiFC~i~~~e~~~~~iV~edd~~~afld~~P~~pGH~LVIPkrHv~~l~dL~~ee~~~L~~l~~~v~~~l~~~~~~~ 147 (218)
T 3ano_A 68 SPAQPFTEIPQLSDEEGLVVARGKLVYAVLNLYPYNPGHLMVVPYRRVSELEDLTDLESAELMAFTQKAIRVIKNVSRPH 147 (218)
T ss_dssp --CCHHHHGGGSCHHHHTEEEECSSEEEEECSSCSSTTCEEEEESSCCCCGGGSCHHHHHHHHHHHHHHHHHHHHHCCCS
T ss_pred CCCCcCcccccCCCCCceEEEECCcEEEEEccCCCCCcEEEEEechhhCChhhCCHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 457999987643 34568999999999999999999999999999999999999999999999877776666554 3
Q ss_pred CCceEEEe--ecCCCc-CeEEEEEeecCCC
Q 008885 463 GKEAVFFE--WLSKRG-THANLQAVPIPTS 489 (550)
Q Consensus 463 ~~~~v~~E--~~~~~~-~H~hi~~vPvp~~ 489 (550)
|++++++. ...+.. .|+|+|+||+...
T Consensus 148 g~ni~~n~G~~aGq~V~~HlHiHIIPR~~g 177 (218)
T 3ano_A 148 GFNVGLNLGTSAGGSLAEHLHVHVVPRWGG 177 (218)
T ss_dssp EEEEEEEESGGGTCTTTTSCCEEEEEECTT
T ss_pred CEEEEEecCcccCCcccCEEEEEEEcccCC
Confidence 45555554 123445 8999999998654
No 16
>2eo4_A 150AA long hypothetical histidine triad nucleotid protein; HIT family, structural genomics, NPPSFA; 1.80A {Sulfolobus tokodaii}
Probab=99.52 E-value=1e-14 Score=133.79 Aligned_cols=98 Identities=22% Similarity=0.289 Sum_probs=77.6
Q ss_pred CcccCCC-CCCCcceEEEECCEEEEEecCCCCCCCeEEEEeccccCCCCCCCHHHHHHHHHHHHHHHHHHhh----cCCc
Q 008885 391 CWFCLSS-PSVESHLIVSVGEYYYCALPKGPLVEDHVLVIPVEHVPNTISTSPECEKELGRFQNSLMMYYKN----QGKE 465 (550)
Q Consensus 391 C~FC~~~-~~~~~hliis~g~~~yl~l~kgpl~~gH~lIiP~~H~~s~~~l~~~~~~Ei~~~~~~L~~~~~~----~~~~ 465 (550)
|+||.+. ...+ ..||+.++.++++++..|..+||+||||.+|++++.+|+++++.+|....+.+.+.+.+ .|++
T Consensus 1 CiFC~i~~~e~~-~~iv~e~~~~~a~~d~~p~~pgh~lViPk~H~~~~~dL~~~e~~~l~~~~~~v~~~l~~~~~~~~~n 79 (149)
T 2eo4_A 1 CTFCSIINRELE-GYFVYEDEKFAAILDKYPVSLGHTLVIPKKHFENYLEADEDTLAELAKVVKLVSLGIKDAVKADGLR 79 (149)
T ss_dssp CHHHHHHTTSSC-CCEEEECSSEEEEECSSCSSTTCEEEEESSCCSSGGGSCHHHHHHHHHHHHHHHHHHHHHTTCSEEE
T ss_pred CcCcccccCCCC-ccEEEECCCEEEEECCCCCCCCeEEEEechhhCCHhHCCHHHHHHHHHHHHHHHHHHHHhcCCCCeE
Confidence 9999864 3343 47889999999999999999999999999999999999999999998877777666553 3444
Q ss_pred eEEEe--ecCCCcCeEEEEEeecCCC
Q 008885 466 AVFFE--WLSKRGTHANLQAVPIPTS 489 (550)
Q Consensus 466 ~v~~E--~~~~~~~H~hi~~vPvp~~ 489 (550)
+++.. ...+...|+|+|+||+...
T Consensus 80 i~~n~g~~~gq~v~HlHiHviPr~~~ 105 (149)
T 2eo4_A 80 LLTNIGRSAGQVIFHLHVHIIPTWEG 105 (149)
T ss_dssp EECCCSGGGTCCSCSCCEEEEEECSS
T ss_pred EEEecCcCCCCCcCEEEEEEECCcCC
Confidence 44333 1234478999999997643
No 17
>3o1c_A Histidine triad nucleotide-binding protein 1; hydrolase, HINT protein, HIT protein, adenosine 5'- monophosphoramidase; HET: ADN; 1.08A {Oryctolagus cuniculus} SCOP: d.13.1.1 PDB: 3llj_A* 1rzy_A* 3qgz_A* 3o1z_A 3o1x_A* 4eqe_A* 4eqg_A* 4eqh_A* 3tw2_A* 1kpb_A 1kpf_A* 1kpa_A 1kpc_A 1av5_A* 1kpe_A* 4rhn_A* 3rhn_A* 5rhn_A* 6rhn_A
Probab=99.48 E-value=2.3e-14 Score=127.81 Aligned_cols=98 Identities=17% Similarity=0.123 Sum_probs=74.3
Q ss_pred CCCCcccCCC-CCCCcceEEEECCEEEEEecCCCCCCCeEEEEeccccCCCCCCCHHHHHHHHHHHHHHHHHHhh----c
Q 008885 388 SKECWFCLSS-PSVESHLIVSVGEYYYCALPKGPLVEDHVLVIPVEHVPNTISTSPECEKELGRFQNSLMMYYKN----Q 462 (550)
Q Consensus 388 ~~~C~FC~~~-~~~~~hliis~g~~~yl~l~kgpl~~gH~lIiP~~H~~s~~~l~~~~~~Ei~~~~~~L~~~~~~----~ 462 (550)
.++|.||.+- .+.+ ..||+.++.++++++..|..+||+||||.+|+.++.+|+++.+.++..+.+.++++.+. .
T Consensus 14 ~~~CiFC~i~~~e~~-~~iv~e~e~~~af~d~~P~~pgH~LViPk~H~~~l~dL~~~e~~~l~~l~~~~~~~~~~~~~~~ 92 (126)
T 3o1c_A 14 GGDTIFGKIIRKEIP-AKIIFEDDQALAFHDISPQAPTHFLVIPKKHISQISAAEDADESLLGHLMIVGKKCAADLGLKK 92 (126)
T ss_dssp TCSSHHHHHHHTSSC-CCEEEECSSEEEEECSSCSSSEEEEEEESSCCCCGGGCCGGGHHHHHHHHHHHHHHHHHTTCTT
T ss_pred CCCCCcchhhcCCCc-CCEEEECCCEEEEECCCCCCCceEEEEechHhchHhhCchhHHHHHHHHHHHHHHHHHHhCCCC
Confidence 5689999864 3344 47899999999999999999999999999999999999988766666655444444333 3
Q ss_pred CCceEEEe--ecCCCcCeEEEEEeec
Q 008885 463 GKEAVFFE--WLSKRGTHANLQAVPI 486 (550)
Q Consensus 463 ~~~~v~~E--~~~~~~~H~hi~~vPv 486 (550)
|+++++.. ...+.+.|+|+|+||.
T Consensus 93 g~ni~~n~g~~agq~v~HlH~Hiipr 118 (126)
T 3o1c_A 93 GYRMVVNEGSDGGQSVYHVHLHVLGG 118 (126)
T ss_dssp CEEEECCCHHHHTCCSSSCCEEEEES
T ss_pred CeEEEEecCCccCCccCEeEEEEeCC
Confidence 45544333 2245578999999996
No 18
>1xqu_A HIT family hydrolase; protein STRU initiative, PSI, southeast collaboratory for structural GEN secsg; 2.30A {Clostridium thermocellum} SCOP: d.13.1.1
Probab=99.47 E-value=2.3e-14 Score=131.19 Aligned_cols=100 Identities=17% Similarity=0.128 Sum_probs=76.3
Q ss_pred CCCCcccCCCCCCCcceEEEECCEEEEEecCCCCCCCeEEEEeccccCCCCCCCHHHHHHHHHHHHHHHHHHhhcC----
Q 008885 388 SKECWFCLSSPSVESHLIVSVGEYYYCALPKGPLVEDHVLVIPVEHVPNTISTSPECEKELGRFQNSLMMYYKNQG---- 463 (550)
Q Consensus 388 ~~~C~FC~~~~~~~~hliis~g~~~yl~l~kgpl~~gH~lIiP~~H~~s~~~l~~~~~~Ei~~~~~~L~~~~~~~~---- 463 (550)
+++|+||.+........||+.++.+++++|.+|..|||+||||++|++++.+|+++.+.++..+.+.++++.+..+
T Consensus 34 m~~CiFC~ii~~e~~~~iV~e~e~~~af~d~~P~~pgH~LViPkrHv~~l~dL~~~e~~~l~~l~~~~~~v~~~~~~~~~ 113 (147)
T 1xqu_A 34 LENCVFCKIIKRELPSTIYYEDERVIAIKDINPAAPVHVLIIPKEHIANVKEINESNAQILIDIHKAANKVAEDLGIAEK 113 (147)
T ss_dssp CTTCHHHHHHTTSSCBCEEEECSSEEEEECSSCSSSEEEEEEESSCCSSGGGCCTTTTTHHHHHHHHHHHHHHHTTCTTT
T ss_pred cCCCcccccccCCCCcEEEEECCcEEEEEecCCCCccEEEEEeCcccCChhHCCHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 5689999874332235799999999999999999999999999999999999988887777777766666655443
Q ss_pred -CceEEEe--ecCCCcCeEEEEEeecC
Q 008885 464 -KEAVFFE--WLSKRGTHANLQAVPIP 487 (550)
Q Consensus 464 -~~~v~~E--~~~~~~~H~hi~~vPvp 487 (550)
+++++.. ...+...|+|+|+||..
T Consensus 114 gyni~~n~g~~aGq~v~HlHlHiiP~~ 140 (147)
T 1xqu_A 114 GYRLITNCGVAAGQTVFHLHYHLLGGV 140 (147)
T ss_dssp CEEEECCCSTTTTCCSCSCCEEEEESS
T ss_pred CEEEEEecCcccCCCccEEEEEEeCCC
Confidence 3333322 11244689999999963
No 19
>3ksv_A Uncharacterized protein; HIT family, structural genomics, structural genomics of PATH protozoa consortium, SGPP, unknown function; 1.90A {Leishmania major} SCOP: d.13.1.0
Probab=99.47 E-value=5.1e-14 Score=129.21 Aligned_cols=100 Identities=17% Similarity=0.223 Sum_probs=80.7
Q ss_pred CCCcccCCC-CCCCcceEEEECCEEEEEecCCCCCCCeEEEEeccccCCCCCCCHHHHHHHHHHHHHHHHHHhh-c---C
Q 008885 389 KECWFCLSS-PSVESHLIVSVGEYYYCALPKGPLVEDHVLVIPVEHVPNTISTSPECEKELGRFQNSLMMYYKN-Q---G 463 (550)
Q Consensus 389 ~~C~FC~~~-~~~~~hliis~g~~~yl~l~kgpl~~gH~lIiP~~H~~s~~~l~~~~~~Ei~~~~~~L~~~~~~-~---~ 463 (550)
.+|.||.+- .+.+ ..+|+.++.+++++|..|..+||+||||.+|++++.+|+++++.+|....+.+.+.+.. . |
T Consensus 11 ~~~iFc~Ii~geip-~~iV~ed~~~~af~d~~P~~pgH~LViPk~H~~~l~dL~~~e~~~l~~~~~~v~~~l~~~~~~~g 89 (149)
T 3ksv_A 11 ANCIFCKIIKGDIP-CAKVAETSKALAFMDINPLSRGHMLVIPKEHASCLHELGMEDAADVGVLLAKASRAVAGPDGSMQ 89 (149)
T ss_dssp TTCHHHHHHHTSSC-CCEEEECSSEEEEECSSCSSTTCEEEEESSCCSSGGGSCHHHHHHHHHHHHHHHHHHHCTTSCCE
T ss_pred ccCHHHHHHcCCCC-ccEEEECCCEEEEECCCCCCCCEEEEEeChhhhhhhhCCHHHHHHHHHHHHHHHHHHHHhhCCCC
Confidence 479999864 4454 46889999999999999999999999999999999999999999999988888887764 2 3
Q ss_pred CceEEEe--ecCCCcCeEEEEEeecCCC
Q 008885 464 KEAVFFE--WLSKRGTHANLQAVPIPTS 489 (550)
Q Consensus 464 ~~~v~~E--~~~~~~~H~hi~~vPvp~~ 489 (550)
+++++.. ...+...|+|+|+||+...
T Consensus 90 ~ni~~n~g~~aGq~v~HlHiHiiPR~~~ 117 (149)
T 3ksv_A 90 YNVLQNNGSLAHQEVPHVHFHIIPKTDE 117 (149)
T ss_dssp EEEEECCSTTTTCCSSSCCEEEEEECCT
T ss_pred EEEEEecCcccCCCCCEEEEEEEecccC
Confidence 4433332 1234478999999998664
No 20
>3d03_A Phosphohydrolase; glycerophosphodiesterase, metallohydrolase, phosphatase, metal ION; 1.90A {Enterobacter aerogenes} SCOP: d.159.1.11 PDB: 2zoa_A 2zo9_B 2dxn_A 2dxl_A
Probab=99.44 E-value=6.3e-12 Score=124.57 Aligned_cols=201 Identities=12% Similarity=0.054 Sum_probs=122.2
Q ss_pred CEEEEEcCCCCCh------------HHHHHHHHHHhhhcCCCcEEEEecCCCCCCh-hhHHHHHHHhcccCCCCccEEEE
Q 008885 4 PRILLCGDVLGRL------------NQLFKRVQSVNKSAGPFDAVLCVGQFFPDSS-ELLDEFMNYVEGRSEIPIPTYFI 70 (550)
Q Consensus 4 ~KILv~GDvhG~~------------~~l~~kv~~l~~k~GpfD~li~~GDff~~~~-~~~~~~~~~l~g~~~~p~ptyfv 70 (550)
|||++++|+|++. ..+-+.++.+++...+.|+||++||++.... ...+.+.+++ ..+++|+|+|
T Consensus 1 mri~~iSD~H~~~~~~~~~g~~~~~~~l~~~l~~~~~~~~~~d~vi~~GDl~~~~~~~~~~~~~~~l---~~l~~p~~~v 77 (274)
T 3d03_A 1 MLLAHISDTHFRSRGEKLYGFIDVNAANADVVSQLNALRERPDAVVVSGDIVNCGRPEEYQVARQIL---GSLNYPLYLI 77 (274)
T ss_dssp CEEEEECCCCBCSTTCCBTTTBCHHHHHHHHHHHHHTCSSCCSEEEEESCCBSSCCHHHHHHHHHHH---TTCSSCEEEE
T ss_pred CEEEEEecCCcCCCCcccccccCHHHHHHHHHHHHHhcCCCCCEEEECCCCCCCCCHHHHHHHHHHH---HhcCCCEEEE
Confidence 7999999999985 3444445555544335899999999976432 2223445555 4567899999
Q ss_pred ecCCCChHHHHHHhhccccccCcccCCceecCcEEEcCC-CCeEEEcCeEEEEEeCccCCCCCCCCCCCHHHHHHHHHh-
Q 008885 71 GDYGVGAAKVLLAASKNSANQGFKMDGFKVTDNLFWLKG-SGNFTLHGLSVAYLSGRQSSEGQQFGTYSQDDVDALRAL- 148 (550)
Q Consensus 71 ~GNhe~~~~~l~~l~~~~~~~~~~~~g~ei~~Nl~~Lg~-~gv~~i~GlrIa~lgG~~~~~~~~~~~~te~di~~L~~l- 148 (550)
.||||....+.+.+... +. . +..|. +. .-++..+|++|.+|...... .....+++++++.|.+.
T Consensus 78 ~GNHD~~~~~~~~~~~~-~~---~-----~~~~~---~~~~~~~~~~~~~~i~ld~~~~~--~~~~~~~~~~~~wl~~~l 143 (274)
T 3d03_A 78 PGNHDDKALFLEYLQPL-CP---Q-----LGSDA---NNMRCAVDDFATRLLFIDSSRAG--TSKGWLTDETISWLEAQL 143 (274)
T ss_dssp CCTTSCHHHHHHHHGGG-SG---G-----GCSCG---GGCCEEECSSSSEEEECCCCCTT--CSSBCCCHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHhhhh-hc---C-----cccCC---CceEEEEEeCCEEEEEEeCCCCC--CCCCeeCHHHHHHHHHHH
Confidence 99999755443333210 00 0 00000 00 11233568999988765432 12245677777666653
Q ss_pred hcCCCCccEEEeCCCCccccccccccccccccCCCCCCcHHHHHHHHHh-CCCEEEEccCCCccccccccCCCCcceeEE
Q 008885 149 AEEPGIVDLFLTNEWPSGVTNKAAASDMLVGISDSSNTDSTVSELVAEI-KPRYHIAGSKGVFYAREPYSNVDAVHVTRF 227 (550)
Q Consensus 149 ~~~~~~vDILLTh~wP~gi~~~~~~~~~~~~~~~~~~Gs~~i~~l~~~l-kPRYhf~Gh~~~f~er~Py~~~~~~~~TRF 227 (550)
........|+++|.+|......... . ....+...+.+++++. +++++|+||.|..+... + ...+-+
T Consensus 144 ~~~~~~~~iv~~H~p~~~~~~~~~~-----~--~~~~~~~~l~~~l~~~~~v~~vl~GH~H~~~~~~-~-----~g~~~~ 210 (274)
T 3d03_A 144 FEGGDKPATIFMHHPPLPLGNAQMD-----P--IACENGHRLLALVERFPSLTRIFCGHNHSLTMTQ-Y-----RQALIS 210 (274)
T ss_dssp HHHTTSCEEEEESSCSSCCSCTTTG-----G--GSBTTTHHHHHHHHHCTTEEEEEECSSSSCEEEE-E-----TTEEEE
T ss_pred HhCCCCCEEEEECCCCcccCCcccC-----c--ccCcCHHHHHHHHHhCCCceEEEeCCCCCchhhe-E-----CCEEEE
Confidence 2223457899999999865321100 0 0124678899999988 79999999998755431 1 224566
Q ss_pred EEcCCCC
Q 008885 228 LGLAPVG 234 (550)
Q Consensus 228 I~La~~g 234 (550)
++.|..+
T Consensus 211 ~~pg~~~ 217 (274)
T 3d03_A 211 TLPGTVH 217 (274)
T ss_dssp ECCCSSC
T ss_pred EcCCcce
Confidence 7777665
No 21
>3ib7_A ICC protein; metallophosphoesterase, alpha-beta fold, swapped-dimer, HYDR; HET: BTB; 1.60A {Mycobacterium tuberculosis} PDB: 3ib8_A* 2hy1_A 2hyp_A 2hyo_A
Probab=99.34 E-value=2.2e-11 Score=124.12 Aligned_cols=201 Identities=11% Similarity=0.019 Sum_probs=125.6
Q ss_pred CCEEEEEcCCCCC------------hHHHHHHHHHHhhhcCCCcEEEEecCCCCCCh-hhHHHHHHHhccc-CCCCccEE
Q 008885 3 PPRILLCGDVLGR------------LNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSS-ELLDEFMNYVEGR-SEIPIPTY 68 (550)
Q Consensus 3 ~~KILv~GDvhG~------------~~~l~~kv~~l~~k~GpfD~li~~GDff~~~~-~~~~~~~~~l~g~-~~~p~pty 68 (550)
+|||++++|+|.. ...+-+.++.+++.....|+||++||++.... .....+.+++... ..+.+|+|
T Consensus 25 ~~ri~~iSD~H~~~~~~~~~~~~~~~~~l~~~l~~i~~~~~~~d~vi~~GDl~~~~~~~~~~~~~~~l~~l~~~~~~pv~ 104 (330)
T 3ib7_A 25 DYVLLHISDTHLIGGDRRLYGAVDADDRLGELLEQLNQSGLRPDAIVFTGDLADKGEPAAYRKLRGLVEPFAAQLGAELV 104 (330)
T ss_dssp SEEEEEECCCCBCSSSCCBTTTBCHHHHHHHHHHHHHHHTCCCSEEEECSCCBTTCCHHHHHHHHHHHHHHHHHHTCEEE
T ss_pred CeEEEEEeCCccCCCCcccccccCHHHHHHHHHHHHHhcCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHhhcCCCEE
Confidence 5899999999962 34444445555442336899999999986532 2223344444221 12468999
Q ss_pred EEecCCCChHHHHHHhhccccccCcccCCceecCcEEEcCCCCeEEEcCeEEEEEeCccCCCCCCCCCCCHHHHHHHHHh
Q 008885 69 FIGDYGVGAAKVLLAASKNSANQGFKMDGFKVTDNLFWLKGSGNFTLHGLSVAYLSGRQSSEGQQFGTYSQDDVDALRAL 148 (550)
Q Consensus 69 fv~GNhe~~~~~l~~l~~~~~~~~~~~~g~ei~~Nl~~Lg~~gv~~i~GlrIa~lgG~~~~~~~~~~~~te~di~~L~~l 148 (550)
+|.||||....+...+... . ...+ ...-++.++|++|.++.+... ......+.+++++-|.+.
T Consensus 105 ~v~GNHD~~~~~~~~~~~~---------~--~~~~----~~~~~~~~~~~~~i~lds~~~--~~~~~~~~~~q~~wl~~~ 167 (330)
T 3ib7_A 105 WVMGNHDDRAELRKFLLDE---------A--PSMA----PLDRVCMIDGLRIIVLDTSVP--GHHHGEIRASQLGWLAEE 167 (330)
T ss_dssp ECCCTTSCHHHHHHHHHCC---------C--CCCS----CCCEEEEETTEEEEECCCCCT--TCCSBCCCHHHHHHHHHH
T ss_pred EeCCCCCCHHHHHHHhccc---------c--cccC----CcceEEEeCCEEEEEecCCCC--CCCCCccCHHHHHHHHHH
Confidence 9999999755444444310 0 0000 112345688999999887643 122345678888777764
Q ss_pred h-cCCCCccEEEeCCCCccccccccccccccccCCCCCCcHHHHHHHHHhCCCEEEEccCCCccccccccCCCCcceeEE
Q 008885 149 A-EEPGIVDLFLTNEWPSGVTNKAAASDMLVGISDSSNTDSTVSELVAEIKPRYHIAGSKGVFYAREPYSNVDAVHVTRF 227 (550)
Q Consensus 149 ~-~~~~~vDILLTh~wP~gi~~~~~~~~~~~~~~~~~~Gs~~i~~l~~~lkPRYhf~Gh~~~f~er~Py~~~~~~~~TRF 227 (550)
. .......|+++|.+|......... . ....+...+.+++...+++++|+||.|..+... ...+.+
T Consensus 168 l~~~~~~~~iv~~Hh~p~~~~~~~~~-----~--~~~~~~~~l~~~l~~~~v~~v~~GH~H~~~~~~-------~~g~~~ 233 (330)
T 3ib7_A 168 LATPAPDGTILALHHPPIPSVLDMAV-----T--VELRDQAALGRVLRGTDVRAILAGHLHYSTNAT-------FVGIPV 233 (330)
T ss_dssp TTSCCTTCEEEECSSCSSCCSSGGGG-----G--GSBSCHHHHHHHHTTSSEEEEEECSSSSCEEEE-------ETTEEE
T ss_pred HHhcccCCeEEEEECCCCCCCccccc-----c--ccccCHHHHHHHHhccCceEEEECCCCCcccce-------ECCEEE
Confidence 3 223344799999999875321110 0 023567889999999999999999998765421 234777
Q ss_pred EEcCCCC
Q 008885 228 LGLAPVG 234 (550)
Q Consensus 228 I~La~~g 234 (550)
++.+..+
T Consensus 234 ~~~gs~~ 240 (330)
T 3ib7_A 234 SVASATC 240 (330)
T ss_dssp EECCCSS
T ss_pred EecCcce
Confidence 8777765
No 22
>1fit_A FragIle histidine protein; FHIT, fragIle histidine triad protein, putative human tumor suppressor, advanced photon source, APS; HET: FRU; 1.85A {Homo sapiens} SCOP: d.13.1.1 PDB: 1fhi_A* 2fit_A* 3fit_A* 4fit_A 5fit_A* 6fit_A* 2fhi_A*
Probab=99.30 E-value=4.7e-12 Score=115.70 Aligned_cols=90 Identities=14% Similarity=0.220 Sum_probs=72.6
Q ss_pred CCcceEEEECCEEEEEecCCCCCCCeEEEEeccccCCCCCCCHHHHHHHHHHHHHHHHHHhh----cCCceEEEe--ecC
Q 008885 400 VESHLIVSVGEYYYCALPKGPLVEDHVLVIPVEHVPNTISTSPECEKELGRFQNSLMMYYKN----QGKEAVFFE--WLS 473 (550)
Q Consensus 400 ~~~hliis~g~~~yl~l~kgpl~~gH~lIiP~~H~~s~~~l~~~~~~Ei~~~~~~L~~~~~~----~~~~~v~~E--~~~ 473 (550)
++...||+.++.++++++..|..+||+||||.+|++++.+|+++++.+|....+.+.+.+.+ .|+++++.. ...
T Consensus 10 ip~~~iv~e~~~~~a~~d~~p~~pgh~LViPk~h~~~~~dL~~~e~~~l~~~~~~v~~~l~~~~~~~~~ni~~n~g~~ag 89 (147)
T 1fit_A 10 IKPSVVFLKTELSFALVNRKPVVPGHVLVCPLRPVERFHDLRPDEVADLFQTTQRVGTVVEKHFHGTSLTFSMQDGPEAG 89 (147)
T ss_dssp ECGGGEEEECSSEEEEECSSCSSTTCEEEEESSCCSSGGGSCHHHHHHHHHHHHHHHHHHHHHTTCSEEEEEECCSGGGT
T ss_pred cCCcEEEEECCCEEEEECCCCCCCcEEEEEEccccCChhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEecCCccC
Confidence 45567899999999999999999999999999999999999999999888877777666553 344444433 123
Q ss_pred CCcCeEEEEEeecCCC
Q 008885 474 KRGTHANLQAVPIPTS 489 (550)
Q Consensus 474 ~~~~H~hi~~vPvp~~ 489 (550)
+.+.|+|+|+||+...
T Consensus 90 q~v~HlH~HiiPr~~~ 105 (147)
T 1fit_A 90 QTVKHVHVHVLPRKAG 105 (147)
T ss_dssp CCSSSCCEEEEEECTT
T ss_pred CCccEEEEEEECCcCC
Confidence 4578999999998654
No 23
>3ohe_A Histidine triad (HIT) protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology; HET: MSE; 1.20A {Marinobacter aquaeolei}
Probab=99.22 E-value=1.6e-11 Score=110.86 Aligned_cols=89 Identities=11% Similarity=-0.050 Sum_probs=72.5
Q ss_pred CcceEEEECCEEEEEecCCCCCCCeEEEEeccccCCCCCCCHHHHHHHHHHHHHHHHHHh-hcCCceEEEeecCCCcCeE
Q 008885 401 ESHLIVSVGEYYYCALPKGPLVEDHVLVIPVEHVPNTISTSPECEKELGRFQNSLMMYYK-NQGKEAVFFEWLSKRGTHA 479 (550)
Q Consensus 401 ~~hliis~g~~~yl~l~kgpl~~gH~lIiP~~H~~s~~~l~~~~~~Ei~~~~~~L~~~~~-~~~~~~v~~E~~~~~~~H~ 479 (550)
+..++|+.++.||+.|.+.|..|||+||+|.+|+.++.+++++++.++....+.+.+.++ ..+.+.+.+....+.++|+
T Consensus 11 ~d~~~v~~~~~~~v~l~~~p~~pGh~lV~~k~h~~~l~dl~~~~~~~l~~~~~~v~~~l~~~~~~~~~N~~~aGq~V~Hl 90 (137)
T 3ohe_A 11 ADTHKLGESRLCDVLLMNDNTWPWVILVPRVSGIREIYELPNEQQQRLLFESSALSEGMMELFGGDKMNVAALGNMVPQL 90 (137)
T ss_dssp HHEEEEEECSSEEEEEESCTTSCEEEEEESCTTCCSGGGSCHHHHHHHHHHHHHHHHHHHHHTTCSEEEEEECCSSCCSC
T ss_pred cccEEEEECCcEEEEEcCCCCCCEEEEEecccccCChHHCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEeeccCcCCEE
Confidence 345789999999999999999999999999999999999999988888877776666655 3455444444455668999
Q ss_pred EEEEeecCCC
Q 008885 480 NLQAVPIPTS 489 (550)
Q Consensus 480 hi~~vPvp~~ 489 (550)
|+|+||+...
T Consensus 91 H~HviPR~~~ 100 (137)
T 3ohe_A 91 HLHHIVRYQG 100 (137)
T ss_dssp CEEEEEECTT
T ss_pred EEEEeCCCCC
Confidence 9999997654
No 24
>3i24_A HIT family hydrolase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 1.50A {Vibrio fischeri ES114}
Probab=99.20 E-value=1.8e-11 Score=112.04 Aligned_cols=89 Identities=10% Similarity=0.055 Sum_probs=73.1
Q ss_pred CcceEEEECCEEEEEecCCCCCCCeEEEEeccccCCCCCCCHHHHHHHHHHHHHHHHHHh-hcCCceEEEeecCCCcCeE
Q 008885 401 ESHLIVSVGEYYYCALPKGPLVEDHVLVIPVEHVPNTISTSPECEKELGRFQNSLMMYYK-NQGKEAVFFEWLSKRGTHA 479 (550)
Q Consensus 401 ~~hliis~g~~~yl~l~kgpl~~gH~lIiP~~H~~s~~~l~~~~~~Ei~~~~~~L~~~~~-~~~~~~v~~E~~~~~~~H~ 479 (550)
+...+|+.++.||+.|++.|..|||+||+|.+|+.++.+|+++++.++....+.+.+.++ ..+.+.+.+....+.++|+
T Consensus 11 ~d~~~v~~~~~~~v~L~~~p~~pGh~LV~pk~Hv~~l~dL~~e~~~~l~~~~~~va~al~~~~~~~~~Ni~~aGq~V~Hl 90 (149)
T 3i24_A 11 QDCIVLGNLPLCKVLLIKEDIGPWLILVPRIEELKEIHHMTDEQQIQFIKESSAVAQLLEDNFSPDKINIGALGNLVPQL 90 (149)
T ss_dssp HHEEEEEECSSEEEEEECBSSTTEEEEEESCTTCSSGGGSCHHHHHHHHHHHHHHHHHHHHHHCCSEEEEEECCSSCCSC
T ss_pred cCCEEEEECCCEEEEEcCCCCCCEEEEEeCccccCChhHCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEhhhhCCCCEE
Confidence 345789999999999999999999999999999999999999998888877776666655 3455555555455668999
Q ss_pred EEEEeecCCC
Q 008885 480 NLQAVPIPTS 489 (550)
Q Consensus 480 hi~~vPvp~~ 489 (550)
|+|+||+...
T Consensus 91 H~HvIPR~~~ 100 (149)
T 3i24_A 91 HIHHIARFTT 100 (149)
T ss_dssp CEEEEEECTT
T ss_pred EEEEeCCccC
Confidence 9999997653
No 25
>1ems_A Nitfhit, NIT-fragIle histidine triad fusion protein; WORM, nitrilase, nucleotide-binding protein, cancer; 2.80A {Caenorhabditis elegans} SCOP: d.13.1.1 d.160.1.1
Probab=99.20 E-value=2e-11 Score=130.86 Aligned_cols=100 Identities=13% Similarity=0.152 Sum_probs=79.2
Q ss_pred CCCCcccCCCCCCCcceEEEECCEEEEEecCCCCCCCeEEEEeccccCCCCCCCHHHHHHHHHHHHHHHHHHhh-cC---
Q 008885 388 SKECWFCLSSPSVESHLIVSVGEYYYCALPKGPLVEDHVLVIPVEHVPNTISTSPECEKELGRFQNSLMMYYKN-QG--- 463 (550)
Q Consensus 388 ~~~C~FC~~~~~~~~hliis~g~~~yl~l~kgpl~~gH~lIiP~~H~~s~~~l~~~~~~Ei~~~~~~L~~~~~~-~~--- 463 (550)
.+.|.||. ...+...||+.+++++++++..|..+||+||||.+|+.++.+|+++++.+|....+.+.+.+.+ .+
T Consensus 296 ~~~c~fc~--~e~p~~~iv~e~~~~~a~~~~~p~~pgh~lviPk~h~~~~~~l~~~~~~~l~~~~~~v~~~l~~~~~~~~ 373 (440)
T 1ems_A 296 TGGLKFAR--FNIPADHIFYSTPHSFVFVNLKPVTDGHVLVSPKRVVPRLTDLTDAETADLFIVAKKVQAMLEKHHNVTS 373 (440)
T ss_dssp SSCCEETT--EECCGGGEEEECSSEEEEECSSCSSTTCEEEEESSCCSCGGGSCHHHHHHHHHHHHHHHHHHHHHTTCSE
T ss_pred cCceeeec--cccCCceEEEECCCEEEEEcCCcCCCCeEEEEEccccCChhHCCHHHHHHHHHHHHHHHHHHHhhcCCCC
Confidence 55799998 2345567899999999999999999999999999999999999999999999888777776653 33
Q ss_pred CceEEEe--ecCCCcCeEEEEEeecCCC
Q 008885 464 KEAVFFE--WLSKRGTHANLQAVPIPTS 489 (550)
Q Consensus 464 ~~~v~~E--~~~~~~~H~hi~~vPvp~~ 489 (550)
+++++.. ...+.+.|+|+|+||....
T Consensus 374 ~n~~~~~g~~~gq~v~HlH~Hiipr~~~ 401 (440)
T 1ems_A 374 TTICVQDGKDAGQTVPHVHIHILPRRAG 401 (440)
T ss_dssp EEEECCCSGGGTCCSSSCCEEEEEECSS
T ss_pred eEEEEecCCCCCCCccEEEEEEeCCCCC
Confidence 3333322 1234478999999997654
No 26
>3ck2_A Conserved uncharacterized protein (predicted phosphoesterase COG0622); structural genomics, predicted phosphodiesterase, PSI-2; HET: SRT; 2.30A {Streptococcus pneumoniae} SCOP: d.159.1.7
Probab=99.15 E-value=4.2e-10 Score=105.27 Aligned_cols=132 Identities=14% Similarity=-0.029 Sum_probs=90.9
Q ss_pred CCCCEEEEEcCCCCChHHHHHHHHHHhhhcCCCcEEEEecCCCCCChhhHHHHHHHhcccCCCCccEEEEecCCCChHHH
Q 008885 1 MSPPRILLCGDVLGRLNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSSELLDEFMNYVEGRSEIPIPTYFIGDYGVGAAKV 80 (550)
Q Consensus 1 M~~~KILv~GDvhG~~~~l~~kv~~l~~k~GpfD~li~~GDff~~~~~~~~~~~~~l~g~~~~p~ptyfv~GNhe~~~~~ 80 (550)
|.+|||+++||+||+.+.+.+.++.+.+ +.|+||++||+... .+..+ . .|+|+|.||||...
T Consensus 4 m~~m~i~~isD~H~~~~~~~~~~~~~~~---~~d~i~~~GD~~~~------~l~~l----~---~~~~~v~GNhD~~~-- 65 (176)
T 3ck2_A 4 MAKQTIIVMSDSHGDSLIVEEVRDRYVG---KVDAVFHNGDSELR------PDSPL----W---EGIRVVKGNMDFYA-- 65 (176)
T ss_dssp CCCEEEEEECCCTTCHHHHHHHHHHHTT---TSSEEEECSCCCSC------TTCGG----G---TTEEECCCTTCCST--
T ss_pred ccCcEEEEEecCCCCHHHHHHHHHHhhc---CCCEEEECCCCchH------HHHhh----h---CCeEEecCcccchh--
Confidence 7789999999999998876655655543 57999999998321 11111 1 28999999998421
Q ss_pred HHHhhccccccCcccCCceecCcEEEcCCCCeEEEcCeEEEEEeCccCCCCCCCCCCCHHHHHHHHHhhcCCCCccEEEe
Q 008885 81 LLAASKNSANQGFKMDGFKVTDNLFWLKGSGNFTLHGLSVAYLSGRQSSEGQQFGTYSQDDVDALRALAEEPGIVDLFLT 160 (550)
Q Consensus 81 l~~l~~~~~~~~~~~~g~ei~~Nl~~Lg~~gv~~i~GlrIa~lgG~~~~~~~~~~~~te~di~~L~~l~~~~~~vDILLT 160 (550)
.+.+. .++++ .+..|+++
T Consensus 66 ------------------~~p~~-------~~~~~-------------------------------------~~~~i~~~ 83 (176)
T 3ck2_A 66 ------------------GYPER-------LVTEL-------------------------------------GSTKIIQT 83 (176)
T ss_dssp ------------------TCCSE-------EEEEE-------------------------------------TTEEEEEE
T ss_pred ------------------cCCcE-------EEEEE-------------------------------------CCeEEEEE
Confidence 00100 01111 23578999
Q ss_pred CCCCccccccccccccccccCCCCCCcHHHHHHHHHhCCCEEEEccCCCccccccccCCCCcceeEEEEcCCCCC
Q 008885 161 NEWPSGVTNKAAASDMLVGISDSSNTDSTVSELVAEIKPRYHIAGSKGVFYAREPYSNVDAVHVTRFLGLAPVGN 235 (550)
Q Consensus 161 h~wP~gi~~~~~~~~~~~~~~~~~~Gs~~i~~l~~~lkPRYhf~Gh~~~f~er~Py~~~~~~~~TRFI~La~~g~ 235 (550)
|.+|.++ ..+...+.+++...++.+.++||.|..+.. ....+++||.|.++.
T Consensus 84 Hg~~~~~----------------~~~~~~l~~~~~~~~~d~vi~GHtH~~~~~-------~~~~~~~inpGs~~~ 135 (176)
T 3ck2_A 84 HGHLFDI----------------NFNFQKLDYWAQEEEAAICLYGHLHVPSAW-------LEGKILFLNPGSISQ 135 (176)
T ss_dssp CSGGGTT----------------TTCSHHHHHHHHHTTCSEEECCSSCCEEEE-------EETTEEEEEECCSSS
T ss_pred CCCccCC----------------CCCHHHHHHHHHhcCCCEEEECCcCCCCcE-------EECCEEEEECCCCCc
Confidence 9988653 135677888888899999999999875542 123589999998874
No 27
>1s3l_A Hypothetical protein MJ0936; phosphodiesterase, nuclease, structural genomics, BSGC struc funded by NIH; 2.40A {Methanocaldococcus jannaschii} SCOP: d.159.1.7 PDB: 1s3m_A 1s3n_A 2ahd_A
Probab=99.13 E-value=1.5e-09 Score=103.17 Aligned_cols=65 Identities=14% Similarity=0.150 Sum_probs=48.7
Q ss_pred CCEEEEEcCCCCChHHHHHHHHHHhhhcCCCcEEEEecCCCCCChhhHHHHHHHhcccCCCCccEEEEecCCCChH
Q 008885 3 PPRILLCGDVLGRLNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSSELLDEFMNYVEGRSEIPIPTYFIGDYGVGAA 78 (550)
Q Consensus 3 ~~KILv~GDvhG~~~~l~~kv~~l~~k~GpfD~li~~GDff~~~~~~~~~~~~~l~g~~~~p~ptyfv~GNhe~~~ 78 (550)
+|||++++|+||+...+-+.++.+++. ..|+||++||++.+ +..+++ .+++.|+|+|.||||...
T Consensus 25 ~m~i~~iSD~Hg~~~~l~~~l~~~~~~--~~D~ii~~GDl~~~------~~~~~l---~~l~~~~~~V~GNhD~~~ 89 (190)
T 1s3l_A 25 HMKIGIMSDTHDHLPNIRKAIEIFNDE--NVETVIHCGDFVSL------FVIKEF---ENLNANIIATYGNNDGER 89 (190)
T ss_dssp -CEEEEECCCTTCHHHHHHHHHHHHHS--CCSEEEECSCCCST------HHHHHG---GGCSSEEEEECCTTCCCH
T ss_pred CeEEEEEeeCCCCHHHHHHHHHHHhhc--CCCEEEECCCCCCH------HHHHHH---HhcCCCEEEEeCCCcchH
Confidence 389999999999988766666655432 47999999999753 234444 345689999999999753
No 28
>1nnw_A Hypothetical protein; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics, secsg; 1.90A {Pyrococcus furiosus} SCOP: d.159.1.5 PDB: 2gju_A
Probab=99.08 E-value=8.6e-10 Score=108.55 Aligned_cols=188 Identities=11% Similarity=0.058 Sum_probs=101.6
Q ss_pred CEEEEEcCCCCChHHHHHHHHHHh---hhcCCCcEEEEecCCCCCChhhHHHHHHHhcccCCCCccEEEEecCCCChHHH
Q 008885 4 PRILLCGDVLGRLNQLFKRVQSVN---KSAGPFDAVLCVGQFFPDSSELLDEFMNYVEGRSEIPIPTYFIGDYGVGAAKV 80 (550)
Q Consensus 4 ~KILv~GDvhG~~~~l~~kv~~l~---~k~GpfD~li~~GDff~~~~~~~~~~~~~l~g~~~~p~ptyfv~GNhe~~~~~ 80 (550)
|||+++||+||++..+.+.++.+. ......|+||++||++..... ..++.+++....+ ..++|+|.||||.. .
T Consensus 2 m~i~~isD~H~~~~~l~~~l~~~~~~~~~~~~~d~ii~~GD~~~~g~~-~~~~~~~l~~l~~-~~~~~~v~GNhD~~--~ 77 (252)
T 1nnw_A 2 VYVAVLANIAGNLPALTAALSRIEEMREEGYEIEKYYILGNIVGLFPY-PKEVIEVIKDLTK-KENVKIIRGKYDQI--I 77 (252)
T ss_dssp CEEEEEECCTTCHHHHHHHHHHHHHHHHTTCCEEEEEEESCSSSSSSC-HHHHHHHHHHHHH-HSCEEEECCHHHHH--H
T ss_pred cEEEEEeecCCCHHHHHHHHHHHHhhhhccCCCCEEEEeCccCCCCCC-HHHHHHHHHhhHh-hcCeeEEecchHHH--h
Confidence 799999999999988776666665 332147999999999754321 1223334321111 14799999999732 2
Q ss_pred HHHhhccccccCcccCCceecCcEEEcCCCCeEEEcCeEEEEEeCccCCCCCCCCCCCHHHHHHHHHhhcC----CCCcc
Q 008885 81 LLAASKNSANQGFKMDGFKVTDNLFWLKGSGNFTLHGLSVAYLSGRQSSEGQQFGTYSQDDVDALRALAEE----PGIVD 156 (550)
Q Consensus 81 l~~l~~~~~~~~~~~~g~ei~~Nl~~Lg~~gv~~i~GlrIa~lgG~~~~~~~~~~~~te~di~~L~~l~~~----~~~vD 156 (550)
..... . +.+ +.. ...+++.++. ..+. . .+...++++.++.|..+... ..+.+
T Consensus 78 ~~~~~-----------~---~~~--~~~-~~~~~~~~~~---~~~~-~---~~~~~l~~~~~~~L~~lp~~~~~~~~~~~ 133 (252)
T 1nnw_A 78 AMSDP-----------H---ATD--PGY-IDKLELPGHV---KKAL-K---FTWEKLGHEGREYLRDLPIYLVDKIGGNE 133 (252)
T ss_dssp HHSCT-----------T---CSS--SGG-GGGSSCCHHH---HHHH-H---HHHHHHHHHHHHHHHTSCSCEEEEETTEE
T ss_pred hcccc-----------c---cCC--ccc-ccchhhhHHH---HHHH-H---HHHHHCCHHHHHHHHhCCceEEEeeCCcE
Confidence 21110 0 000 000 0000000000 0000 0 00001223333444432110 02358
Q ss_pred EEEeCCCCc-cccccccccccccccCCCCCCcHHHHHHHHHh-CCCEEEEccCCCccccccccCCCCcceeEEEEcCCCC
Q 008885 157 LFLTNEWPS-GVTNKAAASDMLVGISDSSNTDSTVSELVAEI-KPRYHIAGSKGVFYAREPYSNVDAVHVTRFLGLAPVG 234 (550)
Q Consensus 157 ILLTh~wP~-gi~~~~~~~~~~~~~~~~~~Gs~~i~~l~~~l-kPRYhf~Gh~~~f~er~Py~~~~~~~~TRFI~La~~g 234 (550)
|+++|..|. ...... ........+.+++... ++++.|+||.|..+.. ....+.+||.|+++
T Consensus 134 i~~~H~~p~~~~~~~~----------~~~~~~~~l~~~~~~~~~~~~vi~GHtH~~~~~-------~~~~~~~in~Gs~~ 196 (252)
T 1nnw_A 134 VFGVYGSPINPFDGEV----------LAEQPTSYYEAIMRPVKDYEMLIVASPMYPVDA-------MTRYGRVVCPGSVG 196 (252)
T ss_dssp EEEESSCSSCTTTCCC----------CSSCCHHHHHHHHGGGTTSSEEEESTTCSEEEE-------EETTEEEEEECCSS
T ss_pred EEEEcCCCCCCccccc----------CCCCCHHHHHHHHhcCCCCCEEEECCccccceE-------ecCCeEEEECCCcc
Confidence 999999884 321110 0123557888888888 9999999999875543 12358999999998
Q ss_pred Cc
Q 008885 235 NK 236 (550)
Q Consensus 235 ~~ 236 (550)
.+
T Consensus 197 ~~ 198 (252)
T 1nnw_A 197 FP 198 (252)
T ss_dssp SC
T ss_pred CC
Confidence 53
No 29
>2a22_A Vacuolar protein sorting 29; alpha-beta-BETA-alpha sandwich, structural genomics, structural genomics consortium, SGC, protein transport; 2.20A {Cryptosporidium parvum} SCOP: d.159.1.7
Probab=99.02 E-value=1.4e-09 Score=105.28 Aligned_cols=144 Identities=13% Similarity=0.116 Sum_probs=88.0
Q ss_pred CEEEEEcCCCCChHH--HHHHHHHHhhhcCCCcEEEEecCCCCCChhhHHHHHHHhcccCCCCccEEEEecCCCChHHHH
Q 008885 4 PRILLCGDVLGRLNQ--LFKRVQSVNKSAGPFDAVLCVGQFFPDSSELLDEFMNYVEGRSEIPIPTYFIGDYGVGAAKVL 81 (550)
Q Consensus 4 ~KILv~GDvhG~~~~--l~~kv~~l~~k~GpfD~li~~GDff~~~~~~~~~~~~~l~g~~~~p~ptyfv~GNhe~~~~~l 81 (550)
|||++++|+|++... +.+.+..+.+ ..+.|+||++||++. . +..++| .+++.|+|+|.||||...
T Consensus 26 m~i~~iSD~H~~~~~~~l~~~l~~~~~-~~~~D~vi~~GDl~~--~----~~l~~l---~~~~~~v~~V~GNHD~~~--- 92 (215)
T 2a22_A 26 DLVLLIGDLKIPYGAKELPSNFRELLA-TDKINYVLCTGNVCS--Q----EYVEML---KNITKNVYIVSGDLDSAI--- 92 (215)
T ss_dssp EEEEEECCCCTTTTCSSCCGGGHHHHH-CTTCCEEEECSCCCC--H----HHHHHH---HHHCSCEEECCCTTCCSC---
T ss_pred cEEEEEecCCCCCChHHHHHHHHHHHh-cCCCCEEEECCCCCC--H----HHHHHH---HHcCCCEEEecCCCcCcc---
Confidence 799999999997532 2233333322 235799999999985 1 233444 234468999999998521
Q ss_pred HHhhccccccCcccCCceecCcEEEcCCCCeEEEcCeEEEEEeCccCCCCCCCCCCCHHHHHHHHHhhcCCCCccEEEeC
Q 008885 82 LAASKNSANQGFKMDGFKVTDNLFWLKGSGNFTLHGLSVAYLSGRQSSEGQQFGTYSQDDVDALRALAEEPGIVDLFLTN 161 (550)
Q Consensus 82 ~~l~~~~~~~~~~~~g~ei~~Nl~~Lg~~gv~~i~GlrIa~lgG~~~~~~~~~~~~te~di~~L~~l~~~~~~vDILLTh 161 (550)
. ...+. ++...... .+ + ...+..|+++|
T Consensus 93 ---------------~-~~~~~--~~~~lp~~-----~~---------------------------~--~~~~~~i~l~H 120 (215)
T 2a22_A 93 ---------------F-NPDPE--SNGVFPEY-----VV---------------------------V--QIGEFKIGLMH 120 (215)
T ss_dssp ---------------C-BCCGG--GTBCCCSE-----EE---------------------------E--EETTEEEEEEC
T ss_pred ---------------c-ccChh--hHhhCCce-----EE---------------------------E--ecCCeEEEEEc
Confidence 0 00000 00000000 00 0 01346789999
Q ss_pred CCCccccccccccccccccCCCCCCcHHHHHHHHHhCCCEEEEccCCCccccccccCCCCcceeEEEEcCCCCC
Q 008885 162 EWPSGVTNKAAASDMLVGISDSSNTDSTVSELVAEIKPRYHIAGSKGVFYAREPYSNVDAVHVTRFLGLAPVGN 235 (550)
Q Consensus 162 ~wP~gi~~~~~~~~~~~~~~~~~~Gs~~i~~l~~~lkPRYhf~Gh~~~f~er~Py~~~~~~~~TRFI~La~~g~ 235 (550)
..|... ..+...+.+++...++.|.++||.|..+.. ....+++||.|.++.
T Consensus 121 g~~~~~----------------~~~~~~l~~~~~~~~~d~vl~GHtH~~~~~-------~~~~~~~inpGS~~~ 171 (215)
T 2a22_A 121 GNQVLP----------------WDDPGSLEQWQRRLDCDILVTGHTHKLRVF-------EKNGKLFLNPGTATG 171 (215)
T ss_dssp STTSSS----------------TTCHHHHHHHHHHHTCSEEEECSSCCCEEE-------EETTEEEEECCCSSC
T ss_pred CCccCC----------------CCCHHHHHHHHhhcCCCEEEECCcCCCccE-------eeCCEEEEECCcccc
Confidence 777532 134567888888889999999999875432 234589999999864
No 30
>1z2w_A Vacuolar protein sorting 29; VPS29, retromer, phosphatase, manganese, protein transport; 2.00A {Mus musculus} SCOP: d.159.1.7 PDB: 1z2x_A 3lh6_A 3lh7_A 3psn_A 3pso_A 1w24_A 2r17_A
Probab=98.99 E-value=1.7e-09 Score=102.57 Aligned_cols=135 Identities=13% Similarity=0.130 Sum_probs=86.6
Q ss_pred CEEEEEcCCCCChH--HHHHHHHHHhhhcCCCcEEEEecCCCCCChhhHHHHHHHhcccCCCCccEEEEecCCCChHHHH
Q 008885 4 PRILLCGDVLGRLN--QLFKRVQSVNKSAGPFDAVLCVGQFFPDSSELLDEFMNYVEGRSEIPIPTYFIGDYGVGAAKVL 81 (550)
Q Consensus 4 ~KILv~GDvhG~~~--~l~~kv~~l~~k~GpfD~li~~GDff~~~~~~~~~~~~~l~g~~~~p~ptyfv~GNhe~~~~~l 81 (550)
|||++++|+|++.. .+.+++.++.++ ...|+||++||++. . +..+++ .+++.|+|+|.||||...
T Consensus 11 m~i~~iSD~H~~~~~~~~~~~l~~~~~~-~~~d~ii~~GDl~~--~----~~~~~l---~~~~~~~~~v~GNhD~~~--- 77 (192)
T 1z2w_A 11 MLVLVLGDLHIPHRCNSLPAKFKKLLVP-GKIQHILCTGNLCT--K----ESYDYL---KTLAGDVHIVRGDFDENL--- 77 (192)
T ss_dssp CEEEEECCCCBTTTCSSCCHHHHTTCCT-TSCSEEEECSCCBS--H----HHHHHH---HHHCSEEEECCCTTCCCT---
T ss_pred eEEEEEecCCCCccchhHHHHHHHHhcc-CCCCEEEEcCCCCC--H----HHHHHH---HhcCCCEEEEcCCcCccc---
Confidence 89999999998642 233334433222 35899999999985 1 233343 233468999999998421
Q ss_pred HHhhccccccCcccCCceecCcEEEcCCCCeEEEcCeEEEEEeCccCCCCCCCCCCCHHHHHHHHHhhcCCCCccEEEeC
Q 008885 82 LAASKNSANQGFKMDGFKVTDNLFWLKGSGNFTLHGLSVAYLSGRQSSEGQQFGTYSQDDVDALRALAEEPGIVDLFLTN 161 (550)
Q Consensus 82 ~~l~~~~~~~~~~~~g~ei~~Nl~~Lg~~gv~~i~GlrIa~lgG~~~~~~~~~~~~te~di~~L~~l~~~~~~vDILLTh 161 (550)
.+.. ..++++ .+..|+++|
T Consensus 78 -----------------~lp~-------~~~~~~-------------------------------------~~~~i~l~H 96 (192)
T 1z2w_A 78 -----------------NYPE-------QKVVTV-------------------------------------GQFKIGLIH 96 (192)
T ss_dssp -----------------TSCS-------EEEEEE-------------------------------------TTEEEEEEC
T ss_pred -----------------cCCc-------ceEEEE-------------------------------------CCEEEEEEC
Confidence 0000 001112 235678888
Q ss_pred CCCccccccccccccccccCCCCCCcHHHHHHHHHhCCCEEEEccCCCccccccccCCCCcceeEEEEcCCCCC
Q 008885 162 EWPSGVTNKAAASDMLVGISDSSNTDSTVSELVAEIKPRYHIAGSKGVFYAREPYSNVDAVHVTRFLGLAPVGN 235 (550)
Q Consensus 162 ~wP~gi~~~~~~~~~~~~~~~~~~Gs~~i~~l~~~lkPRYhf~Gh~~~f~er~Py~~~~~~~~TRFI~La~~g~ 235 (550)
..|.... .+...+.++++..++.|.++||.|..+.. ....+++||.|+++.
T Consensus 97 g~~~~~~----------------~~~~~l~~~~~~~~~d~vi~GHtH~~~~~-------~~~~~~~inpGS~~~ 147 (192)
T 1z2w_A 97 GHQVIPW----------------GDMASLALLQRQFDVDILISGHTHKFEAF-------EHENKFYINPGSATG 147 (192)
T ss_dssp SCCCCBT----------------TCHHHHHHHHHHHSSSEEECCSSCCCEEE-------EETTEEEEECCCTTC
T ss_pred CCcCCCC----------------CCHHHHHHHHHhcCCCEEEECCcCcCccE-------eECCEEEEECCcccc
Confidence 7775421 24556778888889999999999875542 234689999999864
No 31
>3rqz_A Metallophosphoesterase; PSI-biology, midwest center for structural genomics, MCSG, Zn binding, hydrolase; 1.95A {Sphaerobacter thermophilus} SCOP: d.159.1.0
Probab=98.96 E-value=2.7e-10 Score=112.42 Aligned_cols=178 Identities=13% Similarity=0.037 Sum_probs=102.6
Q ss_pred CCEEEEEcCCCCChHHHHHHHHHHhhhcCCCcEEEEecCCCCCChhhHHHHHHHhcccCCCCccEEEEecCCCChHHHHH
Q 008885 3 PPRILLCGDVLGRLNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSSELLDEFMNYVEGRSEIPIPTYFIGDYGVGAAKVLL 82 (550)
Q Consensus 3 ~~KILv~GDvhG~~~~l~~kv~~l~~k~GpfD~li~~GDff~~~~~~~~~~~~~l~g~~~~p~ptyfv~GNhe~~~~~l~ 82 (550)
.|||+++||+||++..+.+.++.+. +.|.+|++||++..... ..++.+++.. .+ .+++|.||||.. +..
T Consensus 3 ~mri~~isDiHg~~~~l~~~l~~~~----~~d~ii~~GDl~~~g~~-~~~~~~~l~~---~~-~~~~v~GNhD~~--~~~ 71 (246)
T 3rqz_A 3 AMRILIISDVHANLVALEAVLSDAG----RVDDIWSLGDIVGYGPR-PRECVELVRV---LA-PNISVIGNHDWA--CIG 71 (246)
T ss_dssp CCCEEEECCCTTCHHHHHHHHHHHC----SCSEEEECSCCSSSSSC-HHHHHHHHHH---HC-SSEECCCHHHHH--HTC
T ss_pred CcEEEEEeecCCCHHHHHHHHHhcc----CCCEEEECCCcCCCCCC-HHHHHHHHHh---cC-CCEEEeCchHHH--Hhc
Confidence 5899999999999988766565553 57999999999864332 2233444421 12 269999999631 111
Q ss_pred HhhccccccCcccCCceecCcEEEcCCCCeEEEcCeEEEEEeCccCCC-CCCCCCCCHHHHHHHHHhhcCCCCccEEEeC
Q 008885 83 AASKNSANQGFKMDGFKVTDNLFWLKGSGNFTLHGLSVAYLSGRQSSE-GQQFGTYSQDDVDALRALAEEPGIVDLFLTN 161 (550)
Q Consensus 83 ~l~~~~~~~~~~~~g~ei~~Nl~~Lg~~gv~~i~GlrIa~lgG~~~~~-~~~~~~~te~di~~L~~l~~~~~~vDILLTh 161 (550)
.. .. .. .. +..... ..+...++++.++.|..+......-+|+++|
T Consensus 72 ~~-----------~~----~~-----------~~--------~~~~~~~~~~~~~l~~~~~~~L~~lp~~~~~~~i~~~H 117 (246)
T 3rqz_A 72 RL-----------SL----DE-----------FN--------PVARFASYWTTMQLQAEHLQYLESLPNRMIDGDWTVVH 117 (246)
T ss_dssp CC-----------CC----C-------------C--------GGGGCHHHHHHHHCCHHHHHHHHHCCSEEEETTEEEES
T ss_pred cC-----------Cc----cc-----------cC--------HHHHHHHHHHHHHcCHHHHHHHHhCCcEEEECCEEEEE
Confidence 00 00 00 00 000000 0001134556666666643211223899999
Q ss_pred CCCccccccccccccccccCCCCCCcHHHHHHHHHhCCCEEEEccCCCccccc----------cccCCC----CcceeEE
Q 008885 162 EWPSGVTNKAAASDMLVGISDSSNTDSTVSELVAEIKPRYHIAGSKGVFYARE----------PYSNVD----AVHVTRF 227 (550)
Q Consensus 162 ~wP~gi~~~~~~~~~~~~~~~~~~Gs~~i~~l~~~lkPRYhf~Gh~~~f~er~----------Py~~~~----~~~~TRF 227 (550)
..|...... .......+.++++..++++.|+||.|.-+.+. +..... -...+++
T Consensus 118 g~p~~~~~~------------~~~~~~~~~~~l~~~~~~l~i~GHtH~p~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~i 185 (246)
T 3rqz_A 118 GSPRHPIWE------------YIYNARIAALNFPAFDTPLCFVGHTHVPLYIREDEALSNVAPHHPNDGEVLDVSSGRYI 185 (246)
T ss_dssp SCSSSTTTC------------CCCSHHHHHHHGGGCCSSEEECCSSSSEEEEEHHHHHTTCCCBCCCTTCEEECSSSCEE
T ss_pred CCcCCcccc------------ccCChHHHHHHHhccCCCEEEECCcCcccEEEecccccccccccccccceeecCCCeEE
Confidence 988764210 11234677888888999999999999754432 000000 0113899
Q ss_pred EEcCCCCCcc
Q 008885 228 LGLAPVGNKE 237 (550)
Q Consensus 228 I~La~~g~~~ 237 (550)
||.|++|.+.
T Consensus 186 vNpGSVG~Pr 195 (246)
T 3rqz_A 186 INPGAVGQPR 195 (246)
T ss_dssp EEECCSSCCC
T ss_pred EECCccCCCC
Confidence 9999998753
No 32
>3nrd_A Histidine triad (HIT) protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.06A {Sinorhizobium meliloti}
Probab=98.94 E-value=3.6e-09 Score=95.20 Aligned_cols=88 Identities=10% Similarity=0.055 Sum_probs=68.3
Q ss_pred CcceEEEECCEEEEEecCCCCCCCeEEEEec-cccCCCCCCCHHHHHHHHHHHHHHHHHHh-hcCCceEEEeecCCCcCe
Q 008885 401 ESHLIVSVGEYYYCALPKGPLVEDHVLVIPV-EHVPNTISTSPECEKELGRFQNSLMMYYK-NQGKEAVFFEWLSKRGTH 478 (550)
Q Consensus 401 ~~hliis~g~~~yl~l~kgpl~~gH~lIiP~-~H~~s~~~l~~~~~~Ei~~~~~~L~~~~~-~~~~~~v~~E~~~~~~~H 478 (550)
+...+|+.++.|++.|.+.|..|| .||||. +|+.++.+|+++++.++....+.+.+.++ ..+.+-+.+....+.++|
T Consensus 13 ~~~~~v~~~~~~~v~l~~~~~~p~-~lvVpkr~h~~~l~dl~~~~~~~l~~~~~~v~~~l~~~~~~~~~N~~~aGq~V~H 91 (135)
T 3nrd_A 13 RDGIPIGTLGLCQMRLMNDRRWPW-LILVPQRADIKEVFELTPLDQAMLTFETNLVAAGLKKATGAEKINIGALGNIVRQ 91 (135)
T ss_dssp HHEEEEEECSSEEEEEESCTTSCE-EEEEECCTTCCSGGGSCHHHHHHHHHHHHHHHHHHHHHHTCSEEEEEECCSSCCS
T ss_pred cCCEEEEECCcEEEEEcCCCCCCE-EEEEcCccccCChHHCCHHHHHHHHHHHHHHHHHHHHhcCCCeEEEeeccCCCCE
Confidence 345789999999999999999995 577777 89999999999988888877776666655 345444444445566899
Q ss_pred EEEEEeecCCC
Q 008885 479 ANLQAVPIPTS 489 (550)
Q Consensus 479 ~hi~~vPvp~~ 489 (550)
+|+|+||+...
T Consensus 92 lH~HviPR~~~ 102 (135)
T 3nrd_A 92 LHVHVIARREG 102 (135)
T ss_dssp CCEEEEEECTT
T ss_pred EEEEEecCCCC
Confidence 99999997543
No 33
>2nxf_A Putative dimetal phosphatase; dinuclear metal center phosphatase, metalloprotein, metallophosphoesterase, protein structure initiative; 1.70A {Danio rerio} SCOP: d.159.1.12
Probab=98.92 E-value=1.3e-08 Score=102.49 Aligned_cols=206 Identities=13% Similarity=0.024 Sum_probs=112.5
Q ss_pred CCEEEEEcCCCCCh-------------------HHHHHHHHHHhhhcCCCcEEEEecCCCCCCh-------hhHHHHHHH
Q 008885 3 PPRILLCGDVLGRL-------------------NQLFKRVQSVNKSAGPFDAVLCVGQFFPDSS-------ELLDEFMNY 56 (550)
Q Consensus 3 ~~KILv~GDvhG~~-------------------~~l~~kv~~l~~k~GpfD~li~~GDff~~~~-------~~~~~~~~~ 56 (550)
.|||++++|+|... ..+-+.++.+++ .+.|+||++||++.... ...+.+.+.
T Consensus 5 ~~~i~~isD~H~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~d~vi~~GD~~~~~~~~~~~~~~~~~~~~~~ 82 (322)
T 2nxf_A 5 VFTFGLIADVQYADIEDGENYLRTRRRYYRGSADLLRDAVLQWRR--ERVQCVVQLGDIIDGHNRRRDASDRALDTVMAE 82 (322)
T ss_dssp SEEEEEECCCCBCSSCCEECTTSSSEECTTHHHHHHHHHHHHHHH--TTCSEEEECSCCBCTHHHHTTCHHHHHHHHHHH
T ss_pred ceEEEEEeeccccccCcccccccchHHHHHHHHHHHHHHHHHHHh--cCCCEEEECCCccCCCCCcchHHHHHHHHHHHH
Confidence 58999999999865 334444455544 35799999999976532 111223344
Q ss_pred hcccCCCCccEEEEecCCCCh----HHHHHHhhccccccCcccCCceecCcEEEcCC-CCeEEE-cCeEEEEEeCccCC-
Q 008885 57 VEGRSEIPIPTYFIGDYGVGA----AKVLLAASKNSANQGFKMDGFKVTDNLFWLKG-SGNFTL-HGLSVAYLSGRQSS- 129 (550)
Q Consensus 57 l~g~~~~p~ptyfv~GNhe~~----~~~l~~l~~~~~~~~~~~~g~ei~~Nl~~Lg~-~gv~~i-~GlrIa~lgG~~~~- 129 (550)
+ ..+++|+|+|+||||.. ..+.+.+..... ......+..+.. .+. .-.+.. +|++|.+|.+....
T Consensus 83 l---~~~~~p~~~v~GNHD~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~----~~~~~y~~~~~~~~~~i~ld~~~~~~ 154 (322)
T 2nxf_A 83 L---DACSVDVHHVWGNHEFYNFSRPSLLSSRLNSAQ-RTGTDTGSDLIG----DDIYAYEFSPAPNFRFVLLDAYDLSV 154 (322)
T ss_dssp H---HTTCSEEEECCCHHHHHHCCHHHHHTSTTCCCC-------CEECGG----GTCCCEEEEEETTEEEEECCTTSBCS
T ss_pred H---HhcCCcEEEecCCCCcccCCHHHHhhhhCCccc-ccccccccccCC----CCceEEEEecCCCEEEEEEcCceecc
Confidence 4 44678999999999741 111111110000 000000000110 111 112344 78888888764310
Q ss_pred ---------------------CC------------------CCCCCCCHHHHHHHHHh-hcCC--CCccEEEeCCCCccc
Q 008885 130 ---------------------EG------------------QQFGTYSQDDVDALRAL-AEEP--GIVDLFLTNEWPSGV 167 (550)
Q Consensus 130 ---------------------~~------------------~~~~~~te~di~~L~~l-~~~~--~~vDILLTh~wP~gi 167 (550)
+. .....+.+++++-|++. .... ...-|+++|.+|...
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~~q~~wL~~~L~~~~~~~~~~iv~~H~p~~~~ 234 (322)
T 2nxf_A 155 IGREEESEKHTHSWRILTQHNHNLQDLNLPPVSVGLEQRFVKFNGGFSEQQLQWLDAVLTLSDHKQERVLIFSHLPVHPC 234 (322)
T ss_dssp SSSCTTSHHHHHHHHHHHHHCCCTTCTTSCSCSSSGGGGCSTTCCBCCHHHHHHHHHHHHHHHHHTCEEEEEESSCCCTT
T ss_pred cccCCCChhhHHHHHHHhhcCcccccccCccccccccccccccCCccCHHHHHHHHHHHHHHHhcCCcEEEEEccCCCCC
Confidence 00 00123456666655542 1111 234599999999765
Q ss_pred cccccccccccccCCCCCCcHHHHHHHHHh-CCCEEEEccCCCccccccccCCCCcceeEEEEcCCC
Q 008885 168 TNKAAASDMLVGISDSSNTDSTVSELVAEI-KPRYHIAGSKGVFYAREPYSNVDAVHVTRFLGLAPV 233 (550)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~Gs~~i~~l~~~l-kPRYhf~Gh~~~f~er~Py~~~~~~~~TRFI~La~~ 233 (550)
.. + +. ....+...+.+++.+. +.+++|+||.|....... ...+++|+.+..
T Consensus 235 ~~--~----~~---~~~~~~~~~~~ll~~~~~v~~~~~GH~H~~~~~~~------~~g~~~i~~~~~ 286 (322)
T 2nxf_A 235 AA--D----PI---CLAWNHEAVLSVLRSHQSVLCFIAGHDHDGGRCTD------SSGAQHITLEGV 286 (322)
T ss_dssp SS--C----GG---GSCTTHHHHHHHHHTCTTEEEEEECSCTTCEEEEC------TTSCEEEECCCG
T ss_pred CC--C----cc---ccccCHHHHHHHHhcCCCeEEEEcCCcCCCCceec------cCCceEEEecch
Confidence 32 1 00 0124678888888887 678899999887554321 234778877665
No 34
>3qfm_A SAPH, putative uncharacterized protein; sandwich fold, asymmetric AP4A hydrolase, phosphodiesterase, binding, Mn2+ binding, hydrolase; 1.90A {Streptococcus pneumoniae} PDB: 3qfn_A 3qfo_A*
Probab=98.92 E-value=5.6e-09 Score=104.69 Aligned_cols=184 Identities=11% Similarity=0.104 Sum_probs=107.6
Q ss_pred CCCCEEEEEcCCCCChHHHHHHHHHHhhhcCCCcEEEEecCCCCCChhhHHHHHHHhcccCCCCccEEEEecCCCChHHH
Q 008885 1 MSPPRILLCGDVLGRLNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSSELLDEFMNYVEGRSEIPIPTYFIGDYGVGAAKV 80 (550)
Q Consensus 1 M~~~KILv~GDvhG~~~~l~~kv~~l~~k~GpfD~li~~GDff~~~~~~~~~~~~~l~g~~~~p~ptyfv~GNhe~~~~~ 80 (550)
|...||++++|+||++..+-+.++.+.+. +.|.|||+||++..... ..++.+++. +. .|+++|.||||. .+
T Consensus 9 ~~~~~i~~iSDiHg~~~~l~~vl~~~~~~--~~D~ii~~GDlv~~g~~-~~~~~~~l~---~~-~~~~~v~GNhD~--~~ 79 (270)
T 3qfm_A 9 MDMTKIALLSDIHGNTTALEAVLADARQL--GVDEYWLLGDILMPGTG-RRRILDLLD---QL-PITARVLGNWED--SL 79 (270)
T ss_dssp --CEEEEEECCCTTCHHHHHHHHHHHHHT--TCCEEEECSCCSSSSSC-SHHHHHHHH---TS-CEEEECCCHHHH--HH
T ss_pred ccccEEEEEecCCCCHHHHHHHHHHHHhc--CCCEEEEcCCCCCCCCC-HHHHHHHHH---cc-CCEEEEcCChHH--HH
Confidence 44679999999999998877777766543 47999999999764332 234556653 22 278999999963 33
Q ss_pred HHHhhccccccCcccCCceecCcEEEcCCCCeEEEcCeEEEEEeCccCCCCCCCCCCCHHHHHHHHHhhc----CCCCcc
Q 008885 81 LLAASKNSANQGFKMDGFKVTDNLFWLKGSGNFTLHGLSVAYLSGRQSSEGQQFGTYSQDDVDALRALAE----EPGIVD 156 (550)
Q Consensus 81 l~~l~~~~~~~~~~~~g~ei~~Nl~~Lg~~gv~~i~GlrIa~lgG~~~~~~~~~~~~te~di~~L~~l~~----~~~~vD 156 (550)
+..... ... +.......+. -... -+...++++.++.|..+-. ...+..
T Consensus 80 ~~~~~~----------~~~-------~~~~~~~~~~--------~~~~---~~~~~L~~~~~~~L~~LP~~~~~~~~g~~ 131 (270)
T 3qfm_A 80 WHGVRK----------ELD-------STRPSQRYLL--------RQCQ---YVLEEISLEEIEVLHNQPLQIHRQFGDLT 131 (270)
T ss_dssp HHHHTT----------CSC-------TTSHHHHHHH--------HHHH---HHHTTSCHHHHHHHHSCCSEEEEEETTEE
T ss_pred HHhhcc----------ccC-------CCcHHHHHHH--------HHHH---HHHHHcCHHHHHHHHhCCCceEEEECCcE
Confidence 332210 000 0000000000 0000 0012345666666665421 114568
Q ss_pred EEEeCCCCccccccccccccccccCCCCCCcHHHHHHHHHhCCCEEEEccCCCccccccccCCCCcceeEEEEcCCCCCc
Q 008885 157 LFLTNEWPSGVTNKAAASDMLVGISDSSNTDSTVSELVAEIKPRYHIAGSKGVFYAREPYSNVDAVHVTRFLGLAPVGNK 236 (550)
Q Consensus 157 ILLTh~wP~gi~~~~~~~~~~~~~~~~~~Gs~~i~~l~~~lkPRYhf~Gh~~~f~er~Py~~~~~~~~TRFI~La~~g~~ 236 (550)
|+++|..|.......- . .......+.+++......+.|+||.|.-+.+. ....+.+||.|++|.+
T Consensus 132 i~lvHg~p~~~~~~~~---~------~~~~~~~l~~~~~~~~~d~~i~GHtH~~~~~~------~~~~~~~iNpGSvg~p 196 (270)
T 3qfm_A 132 VGISHHLPDKNWGREL---I------HTGKQEEFDRLVTHPPCDIAVYGHIHQQLLRY------GTGGQLIVNPGSIGQP 196 (270)
T ss_dssp EEEESSBTTBSSSSTT---S------TTCCHHHHHHTTTTTTCSEEECCSSCSEEEEE------CTTSCEEEEECCSSSC
T ss_pred EEEEECCCCCCCCcee---c------CCCcHHHHHHHhcccCCCEEEECCcCchHhee------ccCCEEEEECCCccCC
Confidence 9999988875421100 0 11234557777777889999999998644421 1235889999999975
No 35
>1z84_A Galactose-1-phosphate uridyl transferase-like protein; GALT, zinc, AMP, structural genomics, protein structure initiative, CESG; HET: AMP; 1.83A {Arabidopsis thaliana} SCOP: d.13.1.2 d.13.1.2 PDB: 1zwj_A 2q4h_A* 2q4l_A 2h39_A*
Probab=98.92 E-value=1.4e-09 Score=113.04 Aligned_cols=98 Identities=16% Similarity=0.229 Sum_probs=76.0
Q ss_pred CCCcccCCCCCCCcceEEEECCEEEEEecCCCCCCCeEEEEeccccCCCCCCCHHHHHHHHHHHHHHHHHHh-h---cCC
Q 008885 389 KECWFCLSSPSVESHLIVSVGEYYYCALPKGPLVEDHVLVIPVEHVPNTISTSPECEKELGRFQNSLMMYYK-N---QGK 464 (550)
Q Consensus 389 ~~C~FC~~~~~~~~hliis~g~~~yl~l~kgpl~~gH~lIiP~~H~~s~~~l~~~~~~Ei~~~~~~L~~~~~-~---~~~ 464 (550)
.+|.||.+-.. .+||+.++++++++|..|..|||+||||.+|+.++.+|+++++.+|....+.+.+.+. . .++
T Consensus 214 ~~ciFc~ii~~---E~iV~E~e~~~af~~~~p~~P~h~lViPk~Hv~~l~dl~~~e~~~La~~l~~v~~~l~~~~~~~~y 290 (351)
T 1z84_A 214 GKCCLCEAKSK---HFVIDESSHFVSVAPFAATYPFEIWIIPKDHSSHFHHLDDVKAVDLGGLLKLMLQKIAKQLNDPPY 290 (351)
T ss_dssp SSCTTTTHHHH---SEEEEECSSEEEEECTTCSSTTCEEEEESSCCSCGGGCCHHHHHHHHHHHHHHHHHHHHHTTSCCE
T ss_pred CCCHHHHHHhc---CeEEecCCcEEEEeccCCCCCeEEEEEeccccCChHHCCHHHHHHHHHHHHHHHHHHHHhcCCCCE
Confidence 47999986421 1289999999999999999999999999999999999999999999988876655443 2 345
Q ss_pred ceEEEe-ecC-----CCcCeEEEEEeecCCC
Q 008885 465 EAVFFE-WLS-----KRGTHANLQAVPIPTS 489 (550)
Q Consensus 465 ~~v~~E-~~~-----~~~~H~hi~~vPvp~~ 489 (550)
++++.. -.. +...|+|+|++|+-+.
T Consensus 291 n~~~n~gp~~g~~~~q~v~HlHiHiiPR~~~ 321 (351)
T 1z84_A 291 NYMIHTSPLKVTESQLPYTHWFLQIVPQLSG 321 (351)
T ss_dssp EEEEECCCTTCCGGGGGGCCCEEEEEECCCC
T ss_pred EEEEeCCCccCCCCCCccceEEEEEEccCCC
Confidence 554444 112 2357999999996544
No 36
>1gup_A Galactose-1-phosphate uridylyltransferase; nucleotidyltransferase, galactose metabolism; HET: GDU; 1.80A {Escherichia coli} SCOP: d.13.1.2 d.13.1.2 PDB: 1guq_A* 1hxq_A* 1hxp_A*
Probab=98.91 E-value=8.4e-10 Score=114.74 Aligned_cols=97 Identities=13% Similarity=0.087 Sum_probs=74.4
Q ss_pred CCCcccCCCC-CC-CcceEEEECCEEEEEecCCCCCCCeEEEEeccccCCCCCCCHHHHHHHHHHHHHHHHHHhh-c---
Q 008885 389 KECWFCLSSP-SV-ESHLIVSVGEYYYCALPKGPLVEDHVLVIPVEHVPNTISTSPECEKELGRFQNSLMMYYKN-Q--- 462 (550)
Q Consensus 389 ~~C~FC~~~~-~~-~~hliis~g~~~yl~l~kgpl~~gH~lIiP~~H~~s~~~l~~~~~~Ei~~~~~~L~~~~~~-~--- 462 (550)
++|.||.+-. +. ....||+.++++++++|..|..+||+||||.+|+.++.+|+++++.+|....+.+.+.+.. .
T Consensus 194 ~~Cifc~ii~~E~~~~~~iV~E~e~~~af~~~~p~~pgh~lViPK~Hv~~l~dL~~~e~~~La~~l~~v~~~l~~~~~~~ 273 (348)
T 1gup_A 194 KSPMLVDYVQRELADGSRTVVETEHWLAVVPYWAAWPFETLLLPKAHVLRITDLTDAQRSDLALALKKLTSRYDNLFQCS 273 (348)
T ss_dssp SSCHHHHHHHHHHHHCTTEEEECSSEEEECCTTCCSTTCEEEEESSCCSSGGGCCHHHHHHHHHHHHHHHHHHHHHHTSC
T ss_pred CCCchhHHHhhccccCceEEEeCCcEEEEEccCCCCceEEEEEeCcccCChHHCCHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 5799997632 11 1236889999999999999999999999999999999999999999998776666655442 2
Q ss_pred -CCceEEEee-cC---CCcCeEEEEEee
Q 008885 463 -GKEAVFFEW-LS---KRGTHANLQAVP 485 (550)
Q Consensus 463 -~~~~v~~E~-~~---~~~~H~hi~~vP 485 (550)
++++++.-. .+ +...|+|+|+||
T Consensus 274 ~~Yn~g~~~~p~~g~~q~v~HlHiHiiP 301 (348)
T 1gup_A 274 FPYSMGWHGAPFNGEENQHWQLHAHFYP 301 (348)
T ss_dssp CCEEEEEECCCSSSSCCTTCCCEEEEEC
T ss_pred CCeEEEEEeCCCCCCCCcccEEEEEEec
Confidence 444444431 12 235799999999
No 37
>2q8u_A Exonuclease, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, hydrolase; HET: MSE; 2.20A {Thermotoga maritima MSB8} PDB: 3thn_A
Probab=98.85 E-value=5.3e-09 Score=107.76 Aligned_cols=219 Identities=11% Similarity=0.082 Sum_probs=104.1
Q ss_pred CCCEEEEEcCCC-C----Ch----------HHHHHHHHHHhhhcCCCcEEEEecC-CCCCC---hhhHHHHHHHhcccCC
Q 008885 2 SPPRILLCGDVL-G----RL----------NQLFKRVQSVNKSAGPFDAVLCVGQ-FFPDS---SELLDEFMNYVEGRSE 62 (550)
Q Consensus 2 ~~~KILv~GDvh-G----~~----------~~l~~kv~~l~~k~GpfD~li~~GD-ff~~~---~~~~~~~~~~l~g~~~ 62 (550)
..||||.++|+| | +. ...++++-....+. ..|+||++|| +|... ......+.+++.....
T Consensus 17 ~~mrilh~SD~HlG~~~~~~~~~~~r~~~~~~~l~~lv~~~~~~-~~D~vliaGD~l~d~~~~~~~~~~~~~~~l~~L~~ 95 (336)
T 2q8u_A 17 KELKILHTSDWHLGVTSWTSSRPVDRREELKKALDKVVEEAEKR-EVDLILLTGDLLHSRNNPSVVALHDLLDYLKRMMR 95 (336)
T ss_dssp CEEEEEEEECCCBTCEECTTTCCEECHHHHHHHHHHHHHHHHHH-TCSEEEEESCSBSCSSCCCHHHHHHHHHHHHHHHH
T ss_pred CceEEEEECcccCCCCccccccCcChhHHHHHHHHHHHHHHHHh-CCCEEEECCccccCCCCCCHHHHHHHHHHHHHHHh
Confidence 468999999999 8 32 23344433332233 4799999999 87532 1222334555533222
Q ss_pred CCccEEEEecCCCChHHHHHHhhccccccCcccCCceecCcEEEcCCCCeE---EE--cCeEEEEEeCccCCCCCC-CCC
Q 008885 63 IPIPTYFIGDYGVGAAKVLLAASKNSANQGFKMDGFKVTDNLFWLKGSGNF---TL--HGLSVAYLSGRQSSEGQQ-FGT 136 (550)
Q Consensus 63 ~p~ptyfv~GNhe~~~~~l~~l~~~~~~~~~~~~g~ei~~Nl~~Lg~~gv~---~i--~GlrIa~lgG~~~~~~~~-~~~ 136 (550)
. +|+|+|+||||... +.....- . ....+|++++++.... .+ +++.|.+++......... ...
T Consensus 96 ~-~pv~~i~GNHD~~~--~~~~~~~-------l--~~~g~nv~v~~~~~~~~~~~~~~~~v~i~glp~~~~~~~~~~~~~ 163 (336)
T 2q8u_A 96 T-APVVVLPGNHDWKG--LKLFGNF-------V--TSISSDITFVMSFEPVDVEAKRGQKVRILPFPYPDESEALRKNEG 163 (336)
T ss_dssp H-SCEEECCC--------CHHHHHH-------H--HHHCSSEEECCSSSCEEEECTTSCEEEEEEECCC-------CCSS
T ss_pred c-CCEEEECCCCCccc--cccHHHH-------H--HhcCCEEEEEecccccCceEEeCCCEEEEECCCCCHHHHHHHhhH
Confidence 2 79999999998643 2211100 0 0011568888764432 12 356777775432110000 000
Q ss_pred CCHHHHHHH-HHhhc---CCCCccEEEeCCCCccccccccccccccccCCCCCCcHHHHHHHHHhCCCEEEEccCCCccc
Q 008885 137 YSQDDVDAL-RALAE---EPGIVDLFLTNEWPSGVTNKAAASDMLVGISDSSNTDSTVSELVAEIKPRYHIAGSKGVFYA 212 (550)
Q Consensus 137 ~te~di~~L-~~l~~---~~~~vDILLTh~wP~gi~~~~~~~~~~~~~~~~~~Gs~~i~~l~~~lkPRYhf~Gh~~~f~e 212 (550)
..++.++.+ ..+.. ......||++|.++.+.... +.. .......+...+....+.|+++||.|....
T Consensus 164 ~~~~~~~~~~~~l~~~~~~~~~~~Ill~H~~~~~~~~~-~~~--------~~~~~~~v~~~l~~~~~d~v~~GH~H~~~~ 234 (336)
T 2q8u_A 164 DFRFFLESRLNKLYEEALKKEDFAIFMGHFTVEGLAGY-AGI--------EQGREIIINRALIPSVVDYAALGHIHSFRE 234 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHTCSSEEEEEEESEETTCC-----------------CCCEECGGGSCTTSSEEEEESCSSCEE
T ss_pred HHHHHHHHHHHHHHHhccCCCCCEEEEECccccCCCCC-CCc--------cchhhcccCHHHccccCCEEEEccccCceE
Confidence 011223322 22221 24568899999999876321 100 000000111112234679999999987655
Q ss_pred cccccCCCCcceeEEEEcCCCCC----c-ccceeEEEeccCCC
Q 008885 213 REPYSNVDAVHVTRFLGLAPVGN----K-EKQKFIHALSPTPA 250 (550)
Q Consensus 213 r~Py~~~~~~~~TRFI~La~~g~----~-~K~Kw~yAf~i~p~ 250 (550)
.. ..+++++.|.... . ...|-+.-+.+++.
T Consensus 235 ~~--------~~~~i~y~GS~~~~s~~e~~~~~~~~lv~i~~~ 269 (336)
T 2q8u_A 235 IQ--------KQPLTIYPGSLIRIDFGEEADEKGAVFVELKRG 269 (336)
T ss_dssp EE--------ETTEEEECCCSSCCSGGGTTCCCEEEEEEEETT
T ss_pred eC--------CCccEEECCCCcCCCccccCCCCEEEEEEEeCC
Confidence 31 1246677775421 1 11355555666543
No 38
>1ute_A Protein (II purple acid phosphatase); tartrate resistant acid phosphatase metalloenzyme, uteroferrin, hydrolase; HET: NAG; 1.55A {Sus scrofa} SCOP: d.159.1.1 PDB: 1war_A* 2bq8_X 1qfc_A* 1qhw_A*
Probab=98.85 E-value=1.1e-08 Score=102.56 Aligned_cols=205 Identities=11% Similarity=0.020 Sum_probs=110.1
Q ss_pred CCEEEEEcCCCCCh---------HHHHHHHHHHhhhcCCCcEEEEecCCCCC---ChhhHHHHHHHhccc---CCC-Ccc
Q 008885 3 PPRILLCGDVLGRL---------NQLFKRVQSVNKSAGPFDAVLCVGQFFPD---SSELLDEFMNYVEGR---SEI-PIP 66 (550)
Q Consensus 3 ~~KILv~GDvhG~~---------~~l~~kv~~l~~k~GpfD~li~~GDff~~---~~~~~~~~~~~l~g~---~~~-p~p 66 (550)
.+||+++||+|... ..+.+.+..+.++. +.|+||++||++.. ......++.+.+... ..+ ++|
T Consensus 6 ~~~~~~isD~h~~~~~~~~~~~~~~~~~~l~~~~~~~-~~d~vv~~GD~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~p 84 (313)
T 1ute_A 6 ILRFVAVGDWGGVPNAPFHTAREMANAKAIATTVKTL-GADFILSLGDNFYFTGVHDAKDKRFQETFEDVFSDPSLRNVP 84 (313)
T ss_dssp CEEEEEECSCCCCSSTTSSCHHHHHHHHHHHHHHHHH-CCSEEEECSCCSTTTCCSSTTCTHHHHHTTTTSCSGGGTTCC
T ss_pred ceEEEEEcccCCCCCccccCchHHHHHHHHHHHHHhc-CCCEEEECCCccCcCCCCCcchHHHHHHHHHHcCchhhcCCC
Confidence 58999999999863 24555555533333 47999999998532 111111344433221 124 789
Q ss_pred EEEEecCCCChHHHHHHhhccccccCcccCCceecCcEEEcCCCCeEEE------cCeEEEEEeCccCCC----------
Q 008885 67 TYFIGDYGVGAAKVLLAASKNSANQGFKMDGFKVTDNLFWLKGSGNFTL------HGLSVAYLSGRQSSE---------- 130 (550)
Q Consensus 67 tyfv~GNhe~~~~~l~~l~~~~~~~~~~~~g~ei~~Nl~~Lg~~gv~~i------~GlrIa~lgG~~~~~---------- 130 (550)
+|+|+||||........+.-.. ....+..++.+| .+.+ ++++|.+|.......
T Consensus 85 ~~~v~GNHD~~~~~~~~~~~~~------~~~~~~~~~~~y-----~~~~~~~~~~~~~~~i~lds~~~~~~~~~~~~~~~ 153 (313)
T 1ute_A 85 WHVLAGNHDHLGNVSAQIAYSK------ISKRWNFPSPYY-----RLRFKIPRSNVSVAIFMLDTVTLCGNSDDFVSQQP 153 (313)
T ss_dssp EEECCCHHHHHSCHHHHHHGGG------TSTTEECCSSSE-----EEEEECTTSSCEEEEEECCHHHHHCCGGGSTTCSC
T ss_pred EEEECCCCccCCCccccccccc------cCCCccCcccce-----EEEEecCCCCceEEEEEEEChHHhCcCcccccccc
Confidence 9999999975322222211000 001111122111 1122 367787776542100
Q ss_pred -CCCCCCCCHHHHHHHHH-hhcCCCCccEEEeCCCCccccccccccccccccCCCCCCcHHHHHHHHHhCCCEEEEccCC
Q 008885 131 -GQQFGTYSQDDVDALRA-LAEEPGIVDLFLTNEWPSGVTNKAAASDMLVGISDSSNTDSTVSELVAEIKPRYHIAGSKG 208 (550)
Q Consensus 131 -~~~~~~~te~di~~L~~-l~~~~~~vDILLTh~wP~gi~~~~~~~~~~~~~~~~~~Gs~~i~~l~~~lkPRYhf~Gh~~ 208 (550)
......+.+++++-|.+ +.......-|+++|.+|........ .......+.+++.+.+..++|+||.|
T Consensus 154 ~~~~~~~~~~~q~~wL~~~L~~~~~~~~iv~~H~p~~~~~~~~~----------~~~~~~~l~~~l~~~~v~~~l~GH~H 223 (313)
T 1ute_A 154 ERPRNLALARTQLAWIKKQLAAAKEDYVLVAGHYPVWSIAEHGP----------THCLVKQLLPLLTTHKVTAYLCGHDH 223 (313)
T ss_dssp CSCSCHHHHHHHHHHHHHHHHHCCCSEEEEECSSCSSCCSSSCC----------CHHHHHHTHHHHHHTTCSEEEECSSS
T ss_pred CCccccchHHHHHHHHHHHHHhCCCCeEEEEECCCCccCCCCCC----------cHHHHHHHHHHHHHcCCcEEEECChh
Confidence 00011223445555554 3333346789999999987532111 00112456777888899999999998
Q ss_pred CccccccccCCCCcceeEEEEcCCCCC
Q 008885 209 VFYAREPYSNVDAVHVTRFLGLAPVGN 235 (550)
Q Consensus 209 ~f~er~Py~~~~~~~~TRFI~La~~g~ 235 (550)
.+.-..+ ...+.+|+.|..+.
T Consensus 224 ~~~~~~~------~~g~~~i~~gs~~~ 244 (313)
T 1ute_A 224 NLQYLQD------ENGLGFVLSGAGNF 244 (313)
T ss_dssp SEEEEEC------TTCCEEEEECBSSC
T ss_pred hhhhccC------CCCceEEEECCCcC
Confidence 5322111 23578898887764
No 39
>2kkn_A Uncharacterized protein; protein phosphatase 2A homologue, structural genomics, PSI- 2, protein structure initiative; NMR {Thermotoga maritima}
Probab=98.80 E-value=3.6e-09 Score=99.55 Aligned_cols=62 Identities=18% Similarity=0.195 Sum_probs=43.1
Q ss_pred CEEEEEcCCCC--ChHHHHHHHHHHhhhcCCCcEEEEecCCCCCChhhHHHHHHHhcccCCCCccEEEEecCCCCh
Q 008885 4 PRILLCGDVLG--RLNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSSELLDEFMNYVEGRSEIPIPTYFIGDYGVGA 77 (550)
Q Consensus 4 ~KILv~GDvhG--~~~~l~~kv~~l~~k~GpfD~li~~GDff~~~~~~~~~~~~~l~g~~~~p~ptyfv~GNhe~~ 77 (550)
|||++++|+|| +...+.+.++.+. .+.|+||++||++.. ++.+++. +...|+|+|.||||..
T Consensus 23 mri~~iSD~Hg~~~~~~l~~~l~~~~---~~~D~ii~~GD~~~~------~~~~~l~---~~~~~v~~V~GNhD~~ 86 (178)
T 2kkn_A 23 KRFLLISDSHVPVRMASLPDEILNSL---KEYDGVIGLGDYVDL------DTVILLE---KFSKEFYGVHGNMDYP 86 (178)
T ss_dssp EEEEEECCCCBTTTTCCCCHHHHHGG---GGCSEEEESSCBSCH------HHHHHHH---HHTSSEEECCCSSSCG
T ss_pred eEEEEEecccCCCCHHHHHHHHHHHh---cCCCEEEECCCCCCH------HHHHHHH---hcCCCEEEEECCCCcH
Confidence 79999999997 5544444444443 247999999999752 2334442 2336899999999853
No 40
>2xmo_A LMO2642 protein; phosphodiesterase, hydrolase; 1.70A {Listeria monocytogenes}
Probab=98.79 E-value=1.9e-07 Score=99.43 Aligned_cols=211 Identities=9% Similarity=0.024 Sum_probs=113.2
Q ss_pred CCEEEEEcCCCCCh-------------------------HHHHHH-HHHHhhhcCCCcEEEEecCCCCCCh-hhHHHHHH
Q 008885 3 PPRILLCGDVLGRL-------------------------NQLFKR-VQSVNKSAGPFDAVLCVGQFFPDSS-ELLDEFMN 55 (550)
Q Consensus 3 ~~KILv~GDvhG~~-------------------------~~l~~k-v~~l~~k~GpfD~li~~GDff~~~~-~~~~~~~~ 55 (550)
.|||++++|+|... ...+++ ++.+++ . +.|+||++||++.... ...+.+.+
T Consensus 39 ~~~i~~iSD~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~-~~d~vi~~GDl~~~~~~~~~~~~~~ 116 (443)
T 2xmo_A 39 NLSMVVTTDVHYFAPSLTDNGKAFEKYVAAGDGKQLAYSDEITDAFLADVES-K-KTDVLIISGDLTNNGEKTSHEELAK 116 (443)
T ss_dssp CEEEEEECCCCBCCGGGBCCCHHHHHHHHTSTTCCGGGHHHHHHHHHHHHHH-H-TCSEEEEESCCBSSCCHHHHHHHHH
T ss_pred CeEEEEEeCCCCCCccccccchhhhcccccccccccccHHHHHHHHHHHHHH-c-CCCEEEECCCCCCCCCHHHHHHHHH
Confidence 47999999999742 122222 233322 3 3699999999975432 11223334
Q ss_pred HhcccCCCCccEEEEecCCCChHHH-------------------HHHhhccccccCcccCCceecCcEEEcCCCCeE---
Q 008885 56 YVEGRSEIPIPTYFIGDYGVGAAKV-------------------LLAASKNSANQGFKMDGFKVTDNLFWLKGSGNF--- 113 (550)
Q Consensus 56 ~l~g~~~~p~ptyfv~GNhe~~~~~-------------------l~~l~~~~~~~~~~~~g~ei~~Nl~~Lg~~gv~--- 113 (550)
++......++|+|+|+||||..... +...-. ..+ ....+.--....-+
T Consensus 117 ~l~~l~~~~~~~~~v~GNHD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~--~~~~~~~~~~~~~y~~~ 186 (443)
T 2xmo_A 117 KLTQVEKNGTQVFVVPGNHDINNPWARKFEKDKQLPTDTISPTDFSKIYS--------DFG--YEDAISSDEFSLSYLAA 186 (443)
T ss_dssp HHHHHHHTTCEEEEECCTTTSSCTTCEEEETTEEEECCCCCHHHHHHHTC--------CCC--CTTCSEECSSSSCEEEC
T ss_pred HHHHHHhCCCeEEEECCcCCCCCccccccCCcccccccccCHHHHHHHhh--------hcC--hhhhhccCCCCceEEEe
Confidence 4432233478999999999863210 000000 000 00000000001112
Q ss_pred EEcCeEEEEEeCccCC------CCCCCCCCCHHHHHHHHHhh---cCCCCccEEEeCCCCccccccccccccccccCCCC
Q 008885 114 TLHGLSVAYLSGRQSS------EGQQFGTYSQDDVDALRALA---EEPGIVDLFLTNEWPSGVTNKAAASDMLVGISDSS 184 (550)
Q Consensus 114 ~i~GlrIa~lgG~~~~------~~~~~~~~te~di~~L~~l~---~~~~~vDILLTh~wP~gi~~~~~~~~~~~~~~~~~ 184 (550)
..+|++|++|+..... +......+++++++-|.+.. ......-|+++|.+|....+... .. ...
T Consensus 187 ~~~~~~~i~Lds~~~~~~~~~~~~~~~g~~~~~ql~wL~~~L~~~~~~~~~~Iv~~H~p~~~~~~~~~-----~~--~~~ 259 (443)
T 2xmo_A 187 PSSKVWLLMLDTAIYKTNMQQGNPTTEGGLTAGTLDWIKESSALAKKNGAKLIPVLHHNLTDHNDVIQ-----KG--YTI 259 (443)
T ss_dssp SBSSEEEEECCCBCCTTHHHHTSCCCCBCCCHHHHHHHHHHHHHHHHTTCEEEEECSSBSSCSSCC-------CC--SBC
T ss_pred cCCCEEEEEeeCCCcCcccccCCCCcCCccCHHHHHHHHHHHHHHHHcCCeEEEEECCCCcccccccc-----cc--ccc
Confidence 2468999998875421 11223456777776666532 11133459999999987642111 00 012
Q ss_pred CCcHHHHHHHHHhCCCEEEEccCCCccccccccCCCCcceeEEEEcCCCC
Q 008885 185 NTDSTVSELVAEIKPRYHIAGSKGVFYAREPYSNVDAVHVTRFLGLAPVG 234 (550)
Q Consensus 185 ~Gs~~i~~l~~~lkPRYhf~Gh~~~f~er~Py~~~~~~~~TRFI~La~~g 234 (550)
.+...+.+++++.+++++|+||.|....+. +... .......|+-|.+.
T Consensus 260 ~~~~~l~~ll~~~~v~lvl~GH~H~~~~~~-~~~~-~g~~~~~i~~gs~~ 307 (443)
T 2xmo_A 260 NYNQQVIDALTEGAMDFSLSGHIHTQNIRS-AKST-DGKEITDIVTNALS 307 (443)
T ss_dssp TTHHHHHHHHHHTTCCEEEECSSCSCEEEE-EECT-TSCEEEEEECCCTT
T ss_pred ccHHHHHHHHHHcCCeEEEECCcccCchhh-cccC-CCCceEEEEcCccc
Confidence 467889999999999999999988754432 1111 12234555555554
No 41
>1xm7_A Hypothetical protein AQ_1665; structural genomics, protein structure initi midwest center for structural genomics, PSI, MCSG, unknown; 2.40A {Aquifex aeolicus} SCOP: d.159.1.8
Probab=98.79 E-value=2.3e-08 Score=94.86 Aligned_cols=140 Identities=10% Similarity=0.025 Sum_probs=82.1
Q ss_pred CCEEEEEcCCCCChHH------------HHHHH-HHHhhhcCCCcEEEEecCCCCCChhhHHHHHHHhcccCCCCccEEE
Q 008885 3 PPRILLCGDVLGRLNQ------------LFKRV-QSVNKSAGPFDAVLCVGQFFPDSSELLDEFMNYVEGRSEIPIPTYF 69 (550)
Q Consensus 3 ~~KILv~GDvhG~~~~------------l~~kv-~~l~~k~GpfD~li~~GDff~~~~~~~~~~~~~l~g~~~~p~ptyf 69 (550)
.|||++++|+|+.... +.+++ +.+++...+.|+||++||++... .....+.+++ ..++.|+++
T Consensus 1 ~~~i~~iSD~H~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~D~vi~~GDl~~~~-~~~~~~~~~l---~~l~~~~~~ 76 (195)
T 1xm7_A 1 NAMMYFISDTHFYHENIINLNPEVRFKGFEIVILTNLLKVLKPEDTLYHLGDFTWHF-NDKNEYLRIW---KALPGRKIL 76 (195)
T ss_dssp CCCEEEEBCCCBTCTTHHHHSTTTCCTTHHHHHHHHHHTTCCTTCEEEECSCCBSCS-CCTTSHHHHH---HHSSSEEEE
T ss_pred CcEEEEEeccccCCCccccccCCCCHHHHHHHHHHHHHHhCCCCCEEEECCCCCCCc-hhHHHHHHHH---HHCCCCEEE
Confidence 4799999999964322 22222 23333224689999999996542 1122344555 334568999
Q ss_pred EecCCCChHHHHHHhhccccccCcccCCceecCcEEEcCCCCeEEEcCeEEEEEeCccCCCCCCCCCCCHHHHHHHHHhh
Q 008885 70 IGDYGVGAAKVLLAASKNSANQGFKMDGFKVTDNLFWLKGSGNFTLHGLSVAYLSGRQSSEGQQFGTYSQDDVDALRALA 149 (550)
Q Consensus 70 v~GNhe~~~~~l~~l~~~~~~~~~~~~g~ei~~Nl~~Lg~~gv~~i~GlrIa~lgG~~~~~~~~~~~~te~di~~L~~l~ 149 (550)
|.||||.... .+. .. + . .+..... |..
T Consensus 77 v~GNhD~~~~---~~~----------~~-~--~-----------~l~~~~~------------------------l~~-- 103 (195)
T 1xm7_A 77 VMGNHDKDKE---SLK----------EY-F--D-----------EIYDFYK------------------------IIE-- 103 (195)
T ss_dssp ECCTTCCCHH---HHT----------TT-C--S-----------EEESSEE------------------------EEE--
T ss_pred EeCCCCCchh---hhh----------hh-h--h-----------chhHHHH------------------------HHh--
Confidence 9999986421 111 00 0 0 0000000 000
Q ss_pred cCCCCccEEEeCCCCccccccccccccccccCCCCCCcHHHHHHHHHhCCCEEEEccCCCccc
Q 008885 150 EEPGIVDLFLTNEWPSGVTNKAAASDMLVGISDSSNTDSTVSELVAEIKPRYHIAGSKGVFYA 212 (550)
Q Consensus 150 ~~~~~vDILLTh~wP~gi~~~~~~~~~~~~~~~~~~Gs~~i~~l~~~lkPRYhf~Gh~~~f~e 212 (550)
..+..|++||.+|....... ...+.+.+.+++....+++.++||.|..+.
T Consensus 104 --~~~~~i~~~H~~~~~~~~~~-----------~~~~~~~l~~~~~~~~~~~vi~GHtH~~~~ 153 (195)
T 1xm7_A 104 --HKGKRILLSHYPAKDPITER-----------YPDRQEMVREIYFKENCDLLIHGHVHWNRE 153 (195)
T ss_dssp --ETTEEEEEESSCSSCSSCCS-----------CHHHHHHHHHHHHHTTCSEEEECCCCCCSC
T ss_pred --cCCcEEEEEccCCcCCCccc-----------ccchHHHHHHHHHHcCCcEEEECCcCCCCc
Confidence 02468999999987653210 013467888888888999999999887554
No 42
>3i4s_A Histidine triad protein; hydrolase, phosphatase, HIT superfamily, PSI-2, NYSGXRC, STR genomics, protein structure initiative; 1.75A {Bradyrhizobium japonicum}
Probab=98.78 E-value=2.6e-08 Score=91.00 Aligned_cols=89 Identities=10% Similarity=0.010 Sum_probs=69.2
Q ss_pred CCcceEEEECCEEEEEecCCCCCCCeEEEEecc-ccCCCCCCCHHHHHHHHHHHHHHHHHHhh-cCCceEEEeecCCCcC
Q 008885 400 VESHLIVSVGEYYYCALPKGPLVEDHVLVIPVE-HVPNTISTSPECEKELGRFQNSLMMYYKN-QGKEAVFFEWLSKRGT 477 (550)
Q Consensus 400 ~~~hliis~g~~~yl~l~kgpl~~gH~lIiP~~-H~~s~~~l~~~~~~Ei~~~~~~L~~~~~~-~~~~~v~~E~~~~~~~ 477 (550)
.+...++.....|+|.+.+.+ +.+|+||||.+ |+.++.+|+++++.+|....+.+.+.+++ .+.+.+.+....+.++
T Consensus 15 ~~d~~~~~e~p~~~v~l~~~~-~~~H~LVIPk~~H~~~l~dL~~e~~~~l~~~~~~va~~l~~~~~~~g~N~~~aGq~V~ 93 (149)
T 3i4s_A 15 KEDTIDIGDLPLSKVLVIKDA-NYPWLLLVPRRPDAVEIIDLDEVQQAQLMTEISRVSRALKEITKCDKLNIAALGNLVP 93 (149)
T ss_dssp HHHEEEEEECSSEEEEEESCT-TSCEEEEEECCTTCCSGGGSCHHHHHHHHHHHHHHHHHHHHHHTCSEEEEEECCSSCC
T ss_pred hhCCEEEEEcCceEEEECCCC-CCCEEEEEecccccCChhHCCHHHHHHHHHHHHHHHHHHHHhcCCCeEEEeecCCcCC
Confidence 344578889999999998654 56799999999 99999999999999988877777776553 3444444444556689
Q ss_pred eEEEEEeecCCC
Q 008885 478 HANLQAVPIPTS 489 (550)
Q Consensus 478 H~hi~~vPvp~~ 489 (550)
|+|+|+||+...
T Consensus 94 HlH~HvIPR~~~ 105 (149)
T 3i4s_A 94 QLHVHIIARRTG 105 (149)
T ss_dssp SCCEEEEEECTT
T ss_pred EEEEEEECCcCC
Confidence 999999997653
No 43
>3av0_A DNA double-strand break repair protein MRE11; DNA repair, calcineurin-like phosphoesterase, ABC transporte domain-like; HET: DNA AGS; 3.10A {Methanocaldococcus jannaschii} PDB: 3auz_A*
Probab=98.77 E-value=2.1e-08 Score=105.54 Aligned_cols=204 Identities=13% Similarity=0.033 Sum_probs=106.1
Q ss_pred CCCEEEEEcCCCCChH------------HHHHHHHHHhhhcCCCcEEEEecCCCCCCh---hhHHHHHHHhcccCCCCcc
Q 008885 2 SPPRILLCGDVLGRLN------------QLFKRVQSVNKSAGPFDAVLCVGQFFPDSS---ELLDEFMNYVEGRSEIPIP 66 (550)
Q Consensus 2 ~~~KILv~GDvhG~~~------------~l~~kv~~l~~k~GpfD~li~~GDff~~~~---~~~~~~~~~l~g~~~~p~p 66 (550)
..|||++++|+|.... ..++++-....+. ..|+||++||+|.... .....+.+++......++|
T Consensus 19 ~~mrilhiSD~Hlg~~~~~~~~r~~~~~~~l~~~v~~~~~~-~~D~VliaGDl~d~~~p~~~~~~~~~~~l~~L~~~~~p 97 (386)
T 3av0_A 19 SHMMFVHIADNHLGYRQYNLDDREKDIYDSFKLCIKKILEI-KPDVVLHSGDLFNDLRPPVKALRIAMQAFKKLHENNIK 97 (386)
T ss_dssp CCCEEEEECCCCBTCCGGGCHHHHHHHHHHHHHHHHHHHTT-CCSEEEECSCSBSSSSCCHHHHHHHHHHHHHHHHTTCE
T ss_pred CCeEEEEEccCCCCccccCcchhhHHHHHHHHHHHHHHHHc-CCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHhcCCc
Confidence 3699999999997621 1222222222223 4799999999986432 2223344444322334789
Q ss_pred EEEEecCCCChHHHHHHhhccccccCcccCCceecCcEEEcCCCCeEEE--cCeEEEEEeCccCCCCCCCCCCCHHH-HH
Q 008885 67 TYFIGDYGVGAAKVLLAASKNSANQGFKMDGFKVTDNLFWLKGSGNFTL--HGLSVAYLSGRQSSEGQQFGTYSQDD-VD 143 (550)
Q Consensus 67 tyfv~GNhe~~~~~l~~l~~~~~~~~~~~~g~ei~~Nl~~Lg~~gv~~i--~GlrIa~lgG~~~~~~~~~~~~te~d-i~ 143 (550)
+|+|.||||.....-.... . ..+..++.+|+...++.. .++.|.+++.... ...++ .+
T Consensus 98 v~~v~GNHD~~~~~~~~~~---------~--~~l~~~v~~l~~~~v~~~~~~~v~i~gl~~~~~--------~~~~~~~~ 158 (386)
T 3av0_A 98 VYIVAGNHEMPRRLGEESP---------L--ALLKDYVKILDGKDVINVNGEEIFICGTYYHKK--------SKREEMLD 158 (386)
T ss_dssp EEECCCGGGSCSSTTSCCG---------G--GGGTTTCEECSEEEEEEETTEEEEEEEECCCCS--------TTHHHHHH
T ss_pred EEEEcCCCCCCccccccCH---------H--HHHHHHeEEcCCCcEEEeCCCCEEEEeCCCCCH--------HHHHHHHH
Confidence 9999999985421100000 0 001122455553333222 4567777665321 11222 22
Q ss_pred HHHHhhc--CCCCccEEEeCCCCccccccccccccccccCCCCCCcHHHHHHHHHhCCCEEEEccCCCccccccccCCCC
Q 008885 144 ALRALAE--EPGIVDLFLTNEWPSGVTNKAAASDMLVGISDSSNTDSTVSELVAEIKPRYHIAGSKGVFYAREPYSNVDA 221 (550)
Q Consensus 144 ~L~~l~~--~~~~vDILLTh~wP~gi~~~~~~~~~~~~~~~~~~Gs~~i~~l~~~lkPRYhf~Gh~~~f~er~Py~~~~~ 221 (550)
.|..+.. ......|||+|.++.++... . .... +..+ -++.|+++||.|... ..++
T Consensus 159 ~l~~l~~~~~~~~~~Ill~H~~~~~~~~~-~----------~~~~---~~~l---~~~d~v~~GH~H~~~-~~~~----- 215 (386)
T 3av0_A 159 KLKNFESEAKNYKKKILMLHQGINPYIPL-D----------YELE---HFDL---PKFSYYALGHIHKRI-LERF----- 215 (386)
T ss_dssp HHHHHHHHHHTCSSEEEEECCCCTTTSSS-S----------CSSC---GGGS---CCCSEEEECSCCSCE-EEEC-----
T ss_pred HHHHhhhhcccCCCEEEEECcCccccCCC-C----------cccC---HHHh---hhCCeEEccCCCCCc-cccC-----
Confidence 2332211 13568899999998765220 0 0000 1111 137999999998763 2222
Q ss_pred cceeEEEEcCCCCC-c--c------cceeEEEeccCC
Q 008885 222 VHVTRFLGLAPVGN-K--E------KQKFIHALSPTP 249 (550)
Q Consensus 222 ~~~TRFI~La~~g~-~--~------K~Kw~yAf~i~p 249 (550)
..+.+++.|.... . . ..|-++-+.+..
T Consensus 216 -~~~~i~ypGS~~~~~~~e~~~~~~~~kg~~lv~i~~ 251 (386)
T 3av0_A 216 -NDGILAYSGSTEIIYRNEYEDYKKEGKGFYLVDFSG 251 (386)
T ss_dssp -SSSEEEECCCSSCCSGGGTHHHHHHCSEEEEEECCS
T ss_pred -CCceEEECCcccccCcchhccccCCCCEEEEEEEec
Confidence 2467888877632 1 1 135555566654
No 44
>3tho_B Exonuclease, putative; adenosine triphosphate, bacterial proteins, DNA breaks, DOUB stranded, DNA repair, DNA repair enzymes; HET: ADP; 2.61A {Thermotoga maritima} PDB: 3qg5_C
Probab=98.76 E-value=5e-08 Score=102.47 Aligned_cols=215 Identities=12% Similarity=0.092 Sum_probs=111.0
Q ss_pred CEEEEEcCCCCChH---------------HHHHHHHHHhhhcCCCcEEEEecCCC-CC---ChhhHHHHHHHhcccCCCC
Q 008885 4 PRILLCGDVLGRLN---------------QLFKRVQSVNKSAGPFDAVLCVGQFF-PD---SSELLDEFMNYVEGRSEIP 64 (550)
Q Consensus 4 ~KILv~GDvhG~~~---------------~l~~kv~~l~~k~GpfD~li~~GDff-~~---~~~~~~~~~~~l~g~~~~p 64 (550)
||||+++|+|.... .+++++-.+..+. ..|+||++||+| .. .......+.+++......
T Consensus 1 mrilh~SD~Hlg~~~~~~~~g~~~~~~~~~~l~~l~~~~~~~-~~D~vliaGDl~hd~~~~~~~~~~~~~~~l~~l~~~- 78 (379)
T 3tho_B 1 MKILHTSDWHLGVTSWTSSRPVDRREELKKALDKVVEEAEKR-EVDLILLTGDLLHSRNNPSVVALHDLLDYLKRMMRT- 78 (379)
T ss_dssp CEEEEECCCCBTCEECSSSSCEECHHHHHHHHHHHHHHHHHH-TCSEEEECSCCBSCSSSCCHHHHHHHHHHHHHHHHH-
T ss_pred CeEEEEcccCCCCCccccccCcChhHHHHHHHHHHHHHHHhc-CCCEEEECCCccccCCCCCHHHHHHHHHHHHHHHhC-
Confidence 79999999997543 3444444433333 479999999999 42 222233344444322334
Q ss_pred ccEEEEecCCCChH-HHHHHhhccccccCcccCCceecCcEEEcCCCCeEEE---cC--eEEEEEeCccCCCCCCCCCCC
Q 008885 65 IPTYFIGDYGVGAA-KVLLAASKNSANQGFKMDGFKVTDNLFWLKGSGNFTL---HG--LSVAYLSGRQSSEGQQFGTYS 138 (550)
Q Consensus 65 ~ptyfv~GNhe~~~-~~l~~l~~~~~~~~~~~~g~ei~~Nl~~Lg~~gv~~i---~G--lrIa~lgG~~~~~~~~~~~~t 138 (550)
+|+|+|.||||... .++..+. ..+.+|+.++.....+.+ .| +.|.++...... .....+.
T Consensus 79 ~~v~~i~GNHD~~~~~~~~~~~------------~~~~~~~~~~~~~~~v~l~~~~G~~v~i~glp~~~~~--~~~~~~~ 144 (379)
T 3tho_B 79 APVVVLPGNQDWKGLKLFGNFV------------TSISSDITFVMSFEPVDVEAKRGQKVRILPFPYPDES--EALRKNE 144 (379)
T ss_dssp SCEEECCCTTSCTTHHHHHHHH------------HTTCSSEEECCSSCCEEEECTTCCEEEEEEECCCCCC------CHH
T ss_pred CCEEEEcCCCccccCccccccc------------cccCCcceeecccceEEEEcCCCCEEEEEECCCCCHH--HHhhhhc
Confidence 89999999998542 1222221 123467766654344443 35 666666543221 1111121
Q ss_pred HHHHH----HHHH---hhcCCCCccEEEeCCCCccccccccccccccccCCCCCCcHHHHHHHHHhCCCEEEEccCCCcc
Q 008885 139 QDDVD----ALRA---LAEEPGIVDLFLTNEWPSGVTNKAAASDMLVGISDSSNTDSTVSELVAEIKPRYHIAGSKGVFY 211 (550)
Q Consensus 139 e~di~----~L~~---l~~~~~~vDILLTh~wP~gi~~~~~~~~~~~~~~~~~~Gs~~i~~l~~~lkPRYhf~Gh~~~f~ 211 (550)
.+... .+.. .......+.|+++|..+.|....+... .... ..+...+....+.|+++||.|...
T Consensus 145 ~~~~~~l~~~l~~~~~~~~~~~~~~I~l~H~~v~g~~~~~~se--------~~~~-~~v~~~~~~~~~dyvalGH~H~~q 215 (379)
T 3tho_B 145 GDFRFFLESRLNKLYEEALKKEDFAIFMGHFTVEGLAGYAGIE--------QGRE-IIINRALIPSVVDYAALGHIHSFR 215 (379)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCSSEEEEEEESCBSCCCC---------------CS-CCBCGGGSCTTSSEEEEESCSSCE
T ss_pred cchHHHHHHHHHHHHHHhcCCCCCeEEEEeccccCCccCCCCc--------cccc-cccCHHHcCcCCCEEEcccccCCe
Confidence 22111 1221 111246789999999988753211100 0000 111111112468999999998764
Q ss_pred ccccccCCCCcceeEEEEcCCCCC----ccc-ceeEEEeccCCCC
Q 008885 212 AREPYSNVDAVHVTRFLGLAPVGN----KEK-QKFIHALSPTPAA 251 (550)
Q Consensus 212 er~Py~~~~~~~~TRFI~La~~g~----~~K-~Kw~yAf~i~p~~ 251 (550)
.. ....++++.|.... ... .|-++-+.+++..
T Consensus 216 ~~--------~~~~~i~y~GS~~~~~f~E~~~~k~~~lv~~~~~~ 252 (379)
T 3tho_B 216 EI--------QKQPLTIYPGSLIRIDFGEEADEKGAVFVELKRGE 252 (379)
T ss_dssp EE--------EETTEEEECCCSSCCSGGGSSSCCEEEEEECCSSS
T ss_pred Ee--------CCCCcEEecCCCCCCCcccccCCCEEEEEEEcCCC
Confidence 31 11135666666521 112 4677777776543
No 45
>1ii7_A MRE11 nuclease; RAD50, DNA double-strand break repair, DAMP, manganese, replication; HET: DA; 2.20A {Pyrococcus furiosus} SCOP: d.159.1.4 PDB: 3dsc_A* 3dsd_A* 1s8e_A
Probab=98.63 E-value=1.8e-07 Score=96.25 Aligned_cols=73 Identities=18% Similarity=0.234 Sum_probs=47.1
Q ss_pred CEEEEEcCCCCChH------------HHHHHHHHHhhhcCCCcEEEEecCCCCCC---hhhHHHHHHHhcccCCCCccEE
Q 008885 4 PRILLCGDVLGRLN------------QLFKRVQSVNKSAGPFDAVLCVGQFFPDS---SELLDEFMNYVEGRSEIPIPTY 68 (550)
Q Consensus 4 ~KILv~GDvhG~~~------------~l~~kv~~l~~k~GpfD~li~~GDff~~~---~~~~~~~~~~l~g~~~~p~pty 68 (550)
|||++++|+|.... ..++++-.+..+. ..|+||++||+|... ......+.+++......++|+|
T Consensus 1 mkilh~sD~Hlg~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~D~vl~~GDl~d~~~~~~~~~~~~~~~l~~l~~~~~~v~ 79 (333)
T 1ii7_A 1 MKFAHLADIHLGYEQFHKPQREEEFAEAFKNALEIAVQE-NVDFILIAGDLFHSSRPSPGTLKKAIALLQIPKEHSIPVF 79 (333)
T ss_dssp CEEEEECCCCBTCCGGGCHHHHHHHHHHHHHHHHHHHHT-TCSEEEEESCSBSSSSCCHHHHHHHHHHHHHHHTTTCCEE
T ss_pred CEEEEEcccCCCCcccCCchhhHHHHHHHHHHHHHHHhc-CCCEEEECCCcCCCCCCCHHHHHHHHHHHHHHHHCCCcEE
Confidence 79999999998642 2333332222233 479999999998632 1223334444433244578999
Q ss_pred EEecCCCCh
Q 008885 69 FIGDYGVGA 77 (550)
Q Consensus 69 fv~GNhe~~ 77 (550)
+|.||||..
T Consensus 80 ~v~GNHD~~ 88 (333)
T 1ii7_A 80 AIEGNHDRT 88 (333)
T ss_dssp EECCTTTCC
T ss_pred EeCCcCCCc
Confidence 999999964
No 46
>1su1_A Hypothetical protein YFCE; structural genomics, phosphoesterase, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.25A {Escherichia coli} SCOP: d.159.1.7
Probab=98.39 E-value=5.2e-07 Score=86.72 Aligned_cols=69 Identities=9% Similarity=0.151 Sum_probs=50.0
Q ss_pred CEEEEEcCCCCChHHHHHHHHHHhhhcCCCcEEEEecCCCCCChh-------hHHHHHHHhcccCCCCccEEEEecCCCC
Q 008885 4 PRILLCGDVLGRLNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSSE-------LLDEFMNYVEGRSEIPIPTYFIGDYGVG 76 (550)
Q Consensus 4 ~KILv~GDvhG~~~~l~~kv~~l~~k~GpfD~li~~GDff~~~~~-------~~~~~~~~l~g~~~~p~ptyfv~GNhe~ 76 (550)
|||++++|+||+++.+-+.++.+++. +.|+||++||++..... ...++.+++ .+++.|+|+|.||||.
T Consensus 26 mki~~iSD~H~~~~~l~~~l~~~~~~--~~d~vi~~GDl~~~g~~~~~~~~~~~~~~~~~l---~~~~~~v~~V~GNHD~ 100 (208)
T 1su1_A 26 MKLMFASDIHGSLPATERVLELFAQS--GAQWLVILGDVLNHGPRNALPEGYAPAKVVERL---NEVAHKVIAVRGNCDS 100 (208)
T ss_dssp CEEEEECCCTTBHHHHHHHHHHHHHH--TCSEEEECSCCSCCCTTSCCCTTBCHHHHHHHH---HTTGGGEEECCCTTCC
T ss_pred EEEEEEEcCCCCHHHHHHHHHHHHhc--CCCEEEECCCccccCcccccccccCHHHHHHHH---HhcCCceEEEECCCch
Confidence 79999999999988766666665543 36999999999743211 134555666 3445799999999986
Q ss_pred h
Q 008885 77 A 77 (550)
Q Consensus 77 ~ 77 (550)
.
T Consensus 101 ~ 101 (208)
T 1su1_A 101 E 101 (208)
T ss_dssp H
T ss_pred H
Confidence 3
No 47
>1xzw_A Purple acid phosphatase; hydrolase; HET: NAG FUC MAN; 2.50A {Ipomoea batatas} SCOP: b.1.12.1 d.159.1.1
Probab=98.35 E-value=6.7e-06 Score=87.30 Aligned_cols=209 Identities=12% Similarity=0.039 Sum_probs=112.0
Q ss_pred CCEEEEEcCCCCChHHHHHHHHHHhhhcCCCcEEEEecCCCCCCh------hhHHHHHHHhcccCCCCccEEEEecCCCC
Q 008885 3 PPRILLCGDVLGRLNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSS------ELLDEFMNYVEGRSEIPIPTYFIGDYGVG 76 (550)
Q Consensus 3 ~~KILv~GDvhG~~~~l~~kv~~l~~k~GpfD~li~~GDff~~~~------~~~~~~~~~l~g~~~~p~ptyfv~GNhe~ 76 (550)
.+||+++||.|.... ..+.++.+.+...+.|+||++||+.-... ...+++.+++.. ....+|+|++.||||.
T Consensus 126 ~~~f~~~gD~~~~~~-~~~~l~~i~~~~~~~D~vl~~GD~~y~~~~~~~~~~~~~~~~~~l~~-l~~~~P~~~v~GNHD~ 203 (426)
T 1xzw_A 126 PYVFGLIGDIGQTHD-SNTTLTHYEQNSAKGQAVLFMGDLSYSNRWPNHDNNRWDTWGRFSER-SVAYQPWIWTAGNHEI 203 (426)
T ss_dssp CEEEEEECSCTTBHH-HHHHHHHHHHCTTCCSEEEECSCCCCGGGSGGGCTHHHHHHHHHHHH-HHTTSCEECCCCGGGC
T ss_pred CeEEEEEEeCCCCCc-hHHHHHHHHhCCCCCCEEEeCCChhhcccCCcccchHHHHHHHHHHH-HHhcCCEEEecccccc
Confidence 479999999998643 23445555544336899999999974211 112234444432 2236899999999985
Q ss_pred hHHH-------HHHhhccccccCcccCCceecCcEEEcCCCCeEEEcCeEEEEEeCccCCCCCCCCCCCHHHHHHHHH-h
Q 008885 77 AAKV-------LLAASKNSANQGFKMDGFKVTDNLFWLKGSGNFTLHGLSVAYLSGRQSSEGQQFGTYSQDDVDALRA-L 148 (550)
Q Consensus 77 ~~~~-------l~~l~~~~~~~~~~~~g~ei~~Nl~~Lg~~gv~~i~GlrIa~lgG~~~~~~~~~~~~te~di~~L~~-l 148 (550)
.... +..+.. .+ ..+..+.....+.+ -.++.++++|.+|...... . ...++.+-|++ |
T Consensus 204 ~~~~~~~~~~~~~~~~~-~f--~~p~~~~~~~~~~~-----ys~~~g~~~~i~Ldt~~~~-----~-~~~~Q~~WL~~~L 269 (426)
T 1xzw_A 204 DYAPDIGEYQPFVPFTN-RY--PTPHEASGSGDPLW-----YAIKRASAHIIVLSSYSGF-----V-KYSPQYKWFTSEL 269 (426)
T ss_dssp CCBGGGTBCSTTHHHHH-HS--CCCCGGGTCSSTTS-----EEEEETTEEEEECCTTSCC-----S-TTSHHHHHHHHHH
T ss_pred ccCCccccccCChhheE-EE--eCCcccCCCCCCCe-----EEEEECCEEEEEeeCcccC-----C-CCHHHHHHHHHHH
Confidence 3210 000000 00 00000000001111 1235678888888753211 1 12333444443 2
Q ss_pred hcC---CCCccEEEeCCCCccccccccccccccccCCCCCCcHHHHHHHHHhCCCEEEEccCCCccccccccCCC-----
Q 008885 149 AEE---PGIVDLFLTNEWPSGVTNKAAASDMLVGISDSSNTDSTVSELVAEIKPRYHIAGSKGVFYAREPYSNVD----- 220 (550)
Q Consensus 149 ~~~---~~~vDILLTh~wP~gi~~~~~~~~~~~~~~~~~~Gs~~i~~l~~~lkPRYhf~Gh~~~f~er~Py~~~~----- 220 (550)
+.. ..+--|+++|.|+........ .. ...-...+.+++.+.+....|+||.|.+.-..|+.+..
T Consensus 270 ~~~~~~~~~w~Iv~~H~P~~~~~~~~~----~~----~~~~r~~l~~ll~~~~VdlvlsGH~H~~~r~~p~~~~~~~~~~ 341 (426)
T 1xzw_A 270 EKVNRSETPWLIVLVHAPLYNSYEAHY----ME----GEAMRAIFEPYFVYYKVDIVFSGHVHSYERSERVSNVAYNIVN 341 (426)
T ss_dssp HHCCTTTCCEEEEECSSCSSCCBSTTT----TT----THHHHHHHHHHHHHTTCSEEEECSSSSEEEECSEECCCCCSTT
T ss_pred HhhhhcCCCEEEEEeccCceeCCCccc----CC----CHHHHHHHHHHHHHhCCCEEEEcChhhheeeeeecCccccccC
Confidence 221 233569999999875422100 00 00013466778888899999999999755555654321
Q ss_pred -------CcceeEEEEcCCCCC
Q 008885 221 -------AVHVTRFLGLAPVGN 235 (550)
Q Consensus 221 -------~~~~TRFI~La~~g~ 235 (550)
....|.+|..|.-|+
T Consensus 342 g~~~~~~~~~g~~yi~~G~gG~ 363 (426)
T 1xzw_A 342 AKCTPVSDESAPVYITIGDGGN 363 (426)
T ss_dssp CCCCCEECTTSCEEEEECCSCC
T ss_pred CccccccCCCccEEEEeCCCcc
Confidence 134677888777665
No 48
>1hp1_A 5'-nucleotidase; metallophosphatase, dinuclear, metalloenzyme, hydrolase, domain movement; HET: ATP; 1.70A {Escherichia coli} SCOP: d.114.1.1 d.159.1.2 PDB: 1ush_A 2ush_A 1hpu_A* 1ho5_A* 1oi8_A 1oid_A 1oie_A
Probab=98.34 E-value=1.3e-05 Score=87.22 Aligned_cols=211 Identities=11% Similarity=0.015 Sum_probs=109.7
Q ss_pred CCEEEEEcCCCCChH----------HHHHHHHHHhhh---cCCCcEEEEecCCCCCChh----hHHHHHHHhcccCCCCc
Q 008885 3 PPRILLCGDVLGRLN----------QLFKRVQSVNKS---AGPFDAVLCVGQFFPDSSE----LLDEFMNYVEGRSEIPI 65 (550)
Q Consensus 3 ~~KILv~GDvhG~~~----------~l~~kv~~l~~k---~GpfD~li~~GDff~~~~~----~~~~~~~~l~g~~~~p~ 65 (550)
.++||.++|+||++. .+...++++.+. .++-|++|.+||++..... ..+.+.+.| ..++
T Consensus 8 ~l~Il~~~D~H~~~~~~~~~~~G~~~~~~~v~~~r~~~~~~~~~~lvl~~GD~~~g~~~~~~~~~~~~~~~l---n~lg- 83 (516)
T 1hp1_A 8 KITVLHTNDHHGHFWRNEYGEYGLAAQKTLVDGIRKEVAAEGGSVLLLSGGDINTGVPESDLQDAEPDFRGM---NLVG- 83 (516)
T ss_dssp EEEEEEECCCTTCCSCCTTSCCCHHHHHHHHHHHHHHHHHHTCEEEEEECSCCSSSCHHHHTTTTHHHHHHH---HHHT-
T ss_pred EEEEEEecccccCccCCCCCCcCHHHHHHHHHHHHHhhhccCCCEEEEeCCccCCCcchhhhcCCcHHHHHH---hccC-
Confidence 478999999999743 344444444432 2456899999999753211 011222333 2233
Q ss_pred cEEEEecCCCChH--HHH-HHhhccccccCcccCCceecCcEEEcC-------CCCeEEEcCeEEEEEeCccCCCCC--C
Q 008885 66 PTYFIGDYGVGAA--KVL-LAASKNSANQGFKMDGFKVTDNLFWLK-------GSGNFTLHGLSVAYLSGRQSSEGQ--Q 133 (550)
Q Consensus 66 ptyfv~GNhe~~~--~~l-~~l~~~~~~~~~~~~g~ei~~Nl~~Lg-------~~gv~~i~GlrIa~lgG~~~~~~~--~ 133 (550)
+.+++.||||... +.+ +.+.. .+-..++.|++.-. ...+++.+|++|+.+|-....... .
T Consensus 84 ~d~~~~GNHEfd~g~~~l~~~~~~--------~~~~~l~aNv~~~~~g~~~~~~~~i~~~~G~kIgiiG~~~~~~~~~~~ 155 (516)
T 1hp1_A 84 YDAMAIGNHEFDNPLTVLRQQEKW--------AKFPLLSANIYQKSTGERLFKPWALFKRQDLKIAVIGLTTDDTAKIGN 155 (516)
T ss_dssp CCEEECCGGGGSSCHHHHHHHHHH--------CSSCEECSSEEETTTTEESSBSEEEEEETTEEEEEEEEECTTTTTSSS
T ss_pred CCEEeeccccccCCHHHHHHHHhh--------CCCCEEEeEEEECCCCCcccCCeEEEEECCEEEEEEEecccCcccccC
Confidence 3488999998642 122 22221 11235677876422 224567899999999865332110 0
Q ss_pred -----CCCCC--HHHHHH-HHHhhc-CCCCccEEEeCCCCccccccccccccccccCCCCCCcHHHHHHHHHhCCCEEEE
Q 008885 134 -----FGTYS--QDDVDA-LRALAE-EPGIVDLFLTNEWPSGVTNKAAASDMLVGISDSSNTDSTVSELVAEIKPRYHIA 204 (550)
Q Consensus 134 -----~~~~t--e~di~~-L~~l~~-~~~~vDILLTh~wP~gi~~~~~~~~~~~~~~~~~~Gs~~i~~l~~~lkPRYhf~ 204 (550)
...|. .+.++. +..+.. ....+=|+|+|........... ...+...+.+.+...++...++
T Consensus 156 p~~~~~~~~~d~~~~~~~~v~~l~~~~~~d~iI~l~H~g~~~~~~~~~----------~~~~~~~la~~~~~~~iDlilg 225 (516)
T 1hp1_A 156 PEYFTDIEFRKPADEAKLVIQELQQTEKPDIIIAATHMGHYDNGEHGS----------NAPGDVEMARALPAGSLAMIVG 225 (516)
T ss_dssp CCSCTTEEECCHHHHHHHHHHHHHHHTCCSEEEEEEESCCCGGGCCTT----------SCCCHHHHHHHSCTTSSSEEEC
T ss_pred cCccCCcEEeCHHHHHHHHHHHHHhcCCCCEEEEEecCCccCCCcccc----------cCchHHHHHHhCCCCceeEEEC
Confidence 01222 122322 222221 1223447889987754321100 1134444433333334789999
Q ss_pred ccCCCcccc-------ccccCC-----CCcceeEEEEcCCCCC
Q 008885 205 GSKGVFYAR-------EPYSNV-----DAVHVTRFLGLAPVGN 235 (550)
Q Consensus 205 Gh~~~f~er-------~Py~~~-----~~~~~TRFI~La~~g~ 235 (550)
||.|..+.. .+|... .....|-++..+.+|.
T Consensus 226 GHtH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~ag~~g~ 268 (516)
T 1hp1_A 226 GHSQDPVCMAAENKKQVDYVPGTPCKPDQQNGIWIVQAHEWGK 268 (516)
T ss_dssp CSSCCBCCEEETTEECSSCCTTSCCCCEEETTEEEECBCSTTS
T ss_pred CCCCcccccCCccccccccCCCccccccCCCCcEEEecChhhh
Confidence 999876542 112110 0124588888888775
No 49
>3sp4_A Aprataxin-like protein; HIT domain, zinc finger, DNA-binding protein, DNA deadenylas hydrolase; 1.80A {Schizosaccharomyces pombe} PDB: 3spd_A* 3spl_A* 3szq_A*
Probab=98.33 E-value=3.5e-07 Score=87.20 Aligned_cols=86 Identities=6% Similarity=0.052 Sum_probs=62.6
Q ss_pred EEEECCEEEEEecCCCCCCCeEEEEeccccCCCCCCC------HHHHHHHHHHHH-H-HHHHHhh-----------cCC-
Q 008885 405 IVSVGEYYYCALPKGPLVEDHVLVIPVEHVPNTISTS------PECEKELGRFQN-S-LMMYYKN-----------QGK- 464 (550)
Q Consensus 405 iis~g~~~yl~l~kgpl~~gH~lIiP~~H~~s~~~l~------~~~~~Ei~~~~~-~-L~~~~~~-----------~~~- 464 (550)
||+.++.++++++..|.++||+||||.+|+.++..+. .++..+|..+.. . |.+++.. .|+
T Consensus 23 ~v~edd~~~af~D~~P~a~~H~LVIPk~h~~~~~~p~~al~d~~~Ll~~m~~la~~~~l~~~~~~~~~~~~~~~~~~~~~ 102 (204)
T 3sp4_A 23 VIYYDDDVVLVRDMFPKSKMHLLLMTRDPHLTHVHPLEIMMKHRSLVEKLVSYVQGDLSGLIFDEARNCLSQQLTNEALC 102 (204)
T ss_dssp EEEECSSEEEEECSSCSSSSEEEEEECCTTTTTSCHHHHHHHCHHHHHHHHHHHHTTTHHHHHHHHHHHSCTTCCHHHHH
T ss_pred EEEEcCCEEEEeCCCCCCCccEEEEeccccCcccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCcCCee
Confidence 8999999999999999999999999999999988643 356777777766 5 5555531 111
Q ss_pred ceEEEe-ecCCCcCeEEEEEeecCCCc
Q 008885 465 EAVFFE-WLSKRGTHANLQAVPIPTSK 490 (550)
Q Consensus 465 ~~v~~E-~~~~~~~H~hi~~vPvp~~~ 490 (550)
..+-+. .......|+|+|||-.+..-
T Consensus 103 ~~i~~GfHa~PSm~HLHLHVIS~Df~s 129 (204)
T 3sp4_A 103 NYIKVGFHAGPSMNNLHLHIMTLDHVS 129 (204)
T ss_dssp TTEEEEEESSCSSSSCCEEEEESCCCC
T ss_pred eeEeccCCCCCcccceeEEEeccCCCC
Confidence 122222 24445789999999876553
No 50
>2qfp_A Purple acid phosphatase; binuclear, Fe-Zn, hydrolase; HET: NAG NDG; 2.20A {Phaseolus vulgaris} SCOP: b.1.12.1 d.159.1.1 PDB: 2qfr_A* 1kbp_A* 3kbp_A* 4kbp_A*
Probab=98.24 E-value=1.1e-05 Score=85.55 Aligned_cols=191 Identities=15% Similarity=0.081 Sum_probs=101.3
Q ss_pred CCEEEEEcCCCCChHHHHHHHHHHhhhcCCCcEEEEecCCCCCCh------hhHHHHHHHhcccCCCCccEEEEecCCCC
Q 008885 3 PPRILLCGDVLGRLNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSS------ELLDEFMNYVEGRSEIPIPTYFIGDYGVG 76 (550)
Q Consensus 3 ~~KILv~GDvhG~~~~l~~kv~~l~~k~GpfD~li~~GDff~~~~------~~~~~~~~~l~g~~~~p~ptyfv~GNhe~ 76 (550)
.+||+++||+|..... .+.++.+.+.....|+||++||+.-... ...+++.+++.. ....+|+|++.||||.
T Consensus 119 ~~~f~~igD~~~~~~~-~~~l~~~~~~~~~~D~vl~~GDl~y~~~~~~~~~~~~~~~~~~l~~-~~~~~P~~~v~GNHD~ 196 (424)
T 2qfp_A 119 PYTFGLIGDLGQSFDS-NTTLSHYELSPKKGQTVLFVGDLSYADRYPNHDNVRWDTWGRFTER-SVAYQPWIWTAGNHEI 196 (424)
T ss_dssp CEEEEEECSCTTBHHH-HHHHHHHHTCSSCCCEEEECSCCSCGGGSGGGCTHHHHHHHHHHHH-HHTTSCEEECCCHHHH
T ss_pred CeEEEEEEeCCCCCCh-HHHHHHHHhCCCCCCEEEEcCccccccccccccchHHHHHHHHHHH-HHhcCCeEeecCCccc
Confidence 5799999999987643 3345555544335799999999975321 112334444432 1235899999999973
Q ss_pred hHH--H-----HHHhhccccccCcccCCceecCcEEEcCCCCeEEEcCeEEEEEeCccCCCCCCCCCCCHHHHHHHHH-h
Q 008885 77 AAK--V-----LLAASKNSANQGFKMDGFKVTDNLFWLKGSGNFTLHGLSVAYLSGRQSSEGQQFGTYSQDDVDALRA-L 148 (550)
Q Consensus 77 ~~~--~-----l~~l~~~~~~~~~~~~g~ei~~Nl~~Lg~~gv~~i~GlrIa~lgG~~~~~~~~~~~~te~di~~L~~-l 148 (550)
... + +..+.. .+ ..+..+.....+++ -.+++++++|.+|..... ....+ ++.+-|++ |
T Consensus 197 ~~~~~~~~~~~~~~~~~-~f--~~P~~~~~~~~~~~-----ys~~~g~~~~i~Ldt~~~-----~~~~~-~Q~~WL~~~L 262 (424)
T 2qfp_A 197 EFAPEINETEPFKPFSY-RY--HVPYEASQSTSPFW-----YSIKRASAHIIVLSSYSA-----YGRGT-PQYTWLKKEL 262 (424)
T ss_dssp CCBGGGTBCSTTHHHHH-HC--CCCGGGGTCSSTTS-----EEEEETTEEEEECCTTSC-----CSTTS-HHHHHHHHHH
T ss_pred ccCCcccccccchhhhh-hc--cCCccccCCCCCcE-----EEEEECCEEEEEecCCcc-----CCCcH-HHHHHHHHHH
Confidence 210 0 000000 00 00000000001111 134577889998864321 11223 33444443 2
Q ss_pred hcC---CCCccEEEeCCCCccccccccccccccccCCCCCCcHHHHHHHHHhCCCEEEEccCCCcccccccc
Q 008885 149 AEE---PGIVDLFLTNEWPSGVTNKAAASDMLVGISDSSNTDSTVSELVAEIKPRYHIAGSKGVFYAREPYS 217 (550)
Q Consensus 149 ~~~---~~~vDILLTh~wP~gi~~~~~~~~~~~~~~~~~~Gs~~i~~l~~~lkPRYhf~Gh~~~f~er~Py~ 217 (550)
+.. ..+.-|+++|.|+........ ..+ ..-...+.+++.+.+..+.|+||.|.+--..|..
T Consensus 263 ~~~~~~~~~~~Iv~~H~P~~~~~~~~~----~~~----~~~r~~l~~ll~~~~VdlvlsGH~H~y~r~~~~~ 326 (424)
T 2qfp_A 263 RKVKRSETPWLIVLMHSPLYNSYNHHF----MEG----EAMRTKFEAWFVKYKVDVVFAGHVHAYERSERVS 326 (424)
T ss_dssp HHCCTTTCCEEEEECSSCSSCCBSTTT----TTT----HHHHHHHHHHHHHTTCSEEEECSSSSEEEECSEE
T ss_pred hhhcccCCCEEEEEeCcCceecCcccc----ccc----HHHHHHHHHHHHHhCCcEEEECChhhhheecccc
Confidence 222 134579999999875421100 000 0012456678888999999999998744444543
No 51
>4fbw_A DNA repair protein RAD32; DNA double-strand break repair, nuclease, hydrolase; HET: DNA; 2.20A {Schizosaccharomyces pombe} PDB: 4fcx_B*
Probab=98.16 E-value=1.3e-05 Score=84.92 Aligned_cols=50 Identities=10% Similarity=-0.071 Sum_probs=31.7
Q ss_pred hCCCEEEEccCCCccccccccCCCCcceeEEEEcCCCCC------cccceeEEEeccCC
Q 008885 197 IKPRYHIAGSKGVFYAREPYSNVDAVHVTRFLGLAPVGN------KEKQKFIHALSPTP 249 (550)
Q Consensus 197 lkPRYhf~Gh~~~f~er~Py~~~~~~~~TRFI~La~~g~------~~K~Kw~yAf~i~p 249 (550)
....|++.||.|..+... ..+ ....+.+++.|.... ....|-++-+.|+.
T Consensus 237 ~~~DyvalGH~H~~~~~~-~~~--~~~g~~i~~PGS~~~~s~~e~E~~~kg~~lvei~~ 292 (417)
T 4fbw_A 237 DFYDFVLWGHEHECLIDG-SYN--PTQKFTVVQPGSTIATSLSPGETAPKHCGILNITG 292 (417)
T ss_dssp TTCSEEEEESCCSCEEEE-EEE--TTTTEEEEECCCSSCSSCCHHHHSCCEEEEEEEET
T ss_pred cCCCEEEecCccccceec-ccc--CCCCEEEEECCCCCcCCCccccCCCCEEEEEEEEC
Confidence 457899999999765421 111 133588999998632 11356777777764
No 52
>4fbk_A DNA repair and telomere maintenance protein NBS1, protein RAD32 chimeric protein; DNA double-strand break repair, nuclease; HET: DNA; 2.38A {Schizosaccharomyces pombe} PDB: 4fbq_A*
Probab=98.15 E-value=1.2e-05 Score=86.22 Aligned_cols=49 Identities=10% Similarity=-0.052 Sum_probs=30.6
Q ss_pred CCCEEEEccCCCccccccccCCCCcceeEEEEcCCCCC------cccceeEEEeccCC
Q 008885 198 KPRYHIAGSKGVFYAREPYSNVDAVHVTRFLGLAPVGN------KEKQKFIHALSPTP 249 (550)
Q Consensus 198 kPRYhf~Gh~~~f~er~Py~~~~~~~~TRFI~La~~g~------~~K~Kw~yAf~i~p 249 (550)
...|++.||.|..+.. +..+ ....+.+++.|.... ....|-++-+.|+.
T Consensus 301 g~DyValGH~H~~~~~-~~~~--~~~g~~ivyPGS~~~~s~~e~E~~~kg~~lveI~~ 355 (472)
T 4fbk_A 301 FYDFVLWGHEHECLID-GSYN--PTQKFTVVQPGSTIATSLSPGETAPKHCGILNITG 355 (472)
T ss_dssp TCSEEEEESCCSCEEE-EEEE--TTTTEEEEECCCSSCSSCCGGGCSCCEEEEEEEET
T ss_pred CCCEEEecCcccceee-eccc--CCCCeEEEECCCccccccCccCCCCCEEEEEEEEC
Confidence 5679999999876542 1111 123578999988631 11356777777764
No 53
>3qfk_A Uncharacterized protein; structural genomics, center for structural genomics of infec diseases, csgid, phosphoesterase, hydrolase; HET: MSE AKG; 2.05A {Staphylococcus aureus subsp}
Probab=98.12 E-value=3.3e-05 Score=84.38 Aligned_cols=205 Identities=9% Similarity=0.022 Sum_probs=110.3
Q ss_pred CCEEEEEcCCCCChH----------------HHHHHHHHHhhhcCCCcEEEEecCCCCCChhh---------HHHHHHHh
Q 008885 3 PPRILLCGDVLGRLN----------------QLFKRVQSVNKSAGPFDAVLCVGQFFPDSSEL---------LDEFMNYV 57 (550)
Q Consensus 3 ~~KILv~GDvhG~~~----------------~l~~kv~~l~~k~GpfD~li~~GDff~~~~~~---------~~~~~~~l 57 (550)
+++||.++|+||++. ++...++++.++. +-.++|.+||++...... .....+.+
T Consensus 19 ~l~Il~tnD~Hg~~~~~~~~~~~~~~~gG~a~l~~~i~~~r~~~-~~~l~l~~GD~~~gs~~~~~~~~~~~~~~~~~~~l 97 (527)
T 3qfk_A 19 NIAFYVVSDVHGYIFPTDFTSRNQYQPMGLLLANHVIEQDRRQY-DQSFKIDNGDFLQGSPFCNYLIAHSGSSQPLVDFY 97 (527)
T ss_dssp EEEEEEECCCTTCCSSCCSSSTTCCCSCSHHHHHHHHHHHHTTS-SEEEEEECSCCSSSSHHHHHHHHTTCSSHHHHHHH
T ss_pred cEEEEEEeccCCCccCcccccCCCcCCCcHHHHHHHHHHHHhcC-CCEEEEECCCcCCCcHHHHHHhhcccCcchHHHHH
Confidence 478999999999863 5555566665543 445778899997643111 02233343
Q ss_pred cccCCCCccEEEEecCCCChH---HHHHHhhccccccCcccCCceecCcEEEc------CCCCeEEEcCeEEEEEeCccC
Q 008885 58 EGRSEIPIPTYFIGDYGVGAA---KVLLAASKNSANQGFKMDGFKVTDNLFWL------KGSGNFTLHGLSVAYLSGRQS 128 (550)
Q Consensus 58 ~g~~~~p~ptyfv~GNhe~~~---~~l~~l~~~~~~~~~~~~g~ei~~Nl~~L------g~~gv~~i~GlrIa~lgG~~~ 128 (550)
..+++. +++.||||... .+.+.+.. .+-..++.|++.. ....+++.+|++|+.+|-...
T Consensus 98 ---n~lg~D-~~t~GNHefd~G~~~l~~~~~~--------~~~p~l~aNv~~~g~p~~~~py~i~e~~G~kIgviG~~~~ 165 (527)
T 3qfk_A 98 ---NRMAFD-FGTLGNHEFNYGLPYLKDTLRR--------LNYPVLCANIYENDSTLTDNGVKYFQVGDQTVGVIGLTTQ 165 (527)
T ss_dssp ---HHTCCC-EECCCGGGGTTCHHHHHHHHHH--------CSSCBCCSSEEETTEESSSCSEEEEEETTEEEEEEEEECT
T ss_pred ---HhcCCc-EEeccccccccCHHHHHHHHHh--------CCCCEEEeEeeeCCCCccCCCEEEEEECCEEEEEEEeccC
Confidence 334433 67789998432 22233321 1123567787753 123455789999999987543
Q ss_pred CCCC--C-----CCCCC--HHHHHH-HHHhhcCCCCccEEEeCCCCccccccccccccccccCCCCCCcHHHHHHHHHh-
Q 008885 129 SEGQ--Q-----FGTYS--QDDVDA-LRALAEEPGIVDLFLTNEWPSGVTNKAAASDMLVGISDSSNTDSTVSELVAEI- 197 (550)
Q Consensus 129 ~~~~--~-----~~~~t--e~di~~-L~~l~~~~~~vDILLTh~wP~gi~~~~~~~~~~~~~~~~~~Gs~~i~~l~~~l- 197 (550)
.... . ...|. .+.+++ +..+. ..-.+=|+|+| |+......... +. ....|.....+|++++
T Consensus 166 ~~~~~~~~~~~~g~~~~d~~~~~~~~v~~l~-~~~D~iIvl~H-~G~~~d~~~~~---~~---~~~~~e~~~~~la~~~~ 237 (527)
T 3qfk_A 166 FIPHWEQPEHIQSLTFHSAFEILQQYLPEMK-RHADIIVVCYH-GGFEKDLESGT---PT---EVLTGENEGYAMLEAFS 237 (527)
T ss_dssp TGGGTSCHHHHTTEEECCHHHHHHHHHHHHH-HHCSEEEEEEE-CCCSBCTTTCC---BS---SCCSSSCCHHHHHHHHG
T ss_pred CcccccCccccCCcEEcCHHHHHHHHHHHHH-hCCCEEEEEeC-cCcccccccCc---cc---cccccchHHHHHHHhcC
Confidence 1100 0 01222 122222 22221 11234468888 43322100000 00 0012333455666665
Q ss_pred -CCCEEEEccCCCccccccccCCCCcceeEEEEcCCCCC
Q 008885 198 -KPRYHIAGSKGVFYAREPYSNVDAVHVTRFLGLAPVGN 235 (550)
Q Consensus 198 -kPRYhf~Gh~~~f~er~Py~~~~~~~~TRFI~La~~g~ 235 (550)
.....++||.|..+.. ....|..+..|.+|.
T Consensus 238 ~giDlIlgGHtH~~~~~-------~v~~~~ivqag~~g~ 269 (527)
T 3qfk_A 238 KDIDIFITGHQHRQIAE-------RFKQTAVIQPGTRGT 269 (527)
T ss_dssp GGCSEEECCSSCCEEEE-------EETTEEEEEECSTTS
T ss_pred CCCcEEEECCCCcccce-------EECCEEEeccChhhC
Confidence 6889999999886651 234688888888875
No 54
>3tgh_A Glideosome-associated protein 50; phosphatase fold, NOT A phosphatase, motor protein, structur protein, membrane protein; 1.70A {Plasmodium falciparum 3D7}
Probab=98.06 E-value=4.4e-06 Score=86.48 Aligned_cols=209 Identities=11% Similarity=0.024 Sum_probs=108.2
Q ss_pred CCEEEEEcCCCCChH---HHHHHHHHHhhhcCCCcEEEEecCCCCCCh------hhHHHHHHHhccc-CCCCccEEEEec
Q 008885 3 PPRILLCGDVLGRLN---QLFKRVQSVNKSAGPFDAVLCVGQFFPDSS------ELLDEFMNYVEGR-SEIPIPTYFIGD 72 (550)
Q Consensus 3 ~~KILv~GDvhG~~~---~l~~kv~~l~~k~GpfD~li~~GDff~~~~------~~~~~~~~~l~g~-~~~p~ptyfv~G 72 (550)
+++++++||.+.... .+.+.+.++.++. ++|+||.+||++-.+. ...+.|...+... ....+|.|.|.|
T Consensus 3 ~l~f~~igD~g~g~~~q~~va~~m~~~~~~~-~pd~vl~~GD~~y~G~~~~~d~~~~~~f~~~~~~~~~~~~~P~~~vlG 81 (342)
T 3tgh_A 3 QLRFASLGDWGKDTKGQILNAKYFKQFIKNE-RVTFIVSPGSNFIDGVKGLNDPAWKNLYEDVYSEEKGDMYMPFFTVLG 81 (342)
T ss_dssp CEEEEECCSCBSCCHHHHHHHHHHHHHHHHT-TCCEEEECSCSBTTCCCSTTCTHHHHHTTTTSCCGGGTTCSEEEECCC
T ss_pred eEEEEEEecCCCCCchHHHHHHHHHHHHhhc-CCCEEEECCCcccCCCCcCccHHHHHHHHHHhhhhhhhhCCCEEEeCC
Confidence 579999999997432 2233344444444 6899999999864321 1112333333332 346799999999
Q ss_pred CCCChHHHHHHhhccc--------------cccCcccCCceecCcEEEcCCCCeEEE--------cC-----eEEEEEeC
Q 008885 73 YGVGAAKVLLAASKNS--------------ANQGFKMDGFKVTDNLFWLKGSGNFTL--------HG-----LSVAYLSG 125 (550)
Q Consensus 73 Nhe~~~~~l~~l~~~~--------------~~~~~~~~g~ei~~Nl~~Lg~~gv~~i--------~G-----lrIa~lgG 125 (550)
|||-..+...++.-.. .... .....|..|+.+|--. ..+++ .| ++|..|--
T Consensus 82 NHD~~~~~~aq~~~~~~~~~~~~~~~~~~~~~~~-~~~~rw~~P~~yY~~~-~~f~~~~~~~~~~~g~~~~~v~fi~LDT 159 (342)
T 3tgh_A 82 TRDWTGNYNAQLLKGQGIYIEKNGETSIEKDADA-TNYPKWIMPNYWYHYF-THFTVSSGPSIVKTGHKDLAAAFIFIDT 159 (342)
T ss_dssp HHHHTSCHHHHHHHHHC---------------CC-CSSCEEECSSSSEEEE-EEEEEC---------CEEEEEEEEECCT
T ss_pred CCccCCCchHhhhhhhcccccccccccccccccc-cCCCCccCCcceEEEE-EEeeccccccccccCCCCceEEEEEEeC
Confidence 9974322222221000 0000 0123466666544210 00111 13 45555533
Q ss_pred ccCCCCCCCCCC-------CHHHHHHHHHhhcCCCCccEEEeCCCCccccccccccccccccCCCCCCcHHHHHHHHHhC
Q 008885 126 RQSSEGQQFGTY-------SQDDVDALRALAEEPGIVDLFLTNEWPSGVTNKAAASDMLVGISDSSNTDSTVSELVAEIK 198 (550)
Q Consensus 126 ~~~~~~~~~~~~-------te~di~~L~~l~~~~~~vDILLTh~wP~gi~~~~~~~~~~~~~~~~~~Gs~~i~~l~~~lk 198 (550)
...... ..| .+++.+-|++..+ ....=|++.|.|+.......+. ..-...+..|+.+.+
T Consensus 160 ~~l~~~---~~~~~~~~~~~~~Ql~WLe~~L~-~~~~~IV~~HhP~~~~~~~~~~----------~~l~~~l~~ll~~~~ 225 (342)
T 3tgh_A 160 WVLSSN---FPYKKIHEKAWNDLKSQLSVAKK-IADFIIVVGDQPIYSSGYSRGS----------SYLAYYLLPLLKDAE 225 (342)
T ss_dssp TTTSTT---CSCHHHHHHHHHHHHHHHHHHHH-HCSEEEEECSSCSSCSSTTCCC----------HHHHHHTHHHHHHTT
T ss_pred cccccC---CcccccchHHHHHHHHHHHHhhc-cCCcEEEEECCCCCCCCCCCCc----------HHHHHHHHHHHHHcC
Confidence 211110 111 1122222333111 2356689999999865321110 011356778899999
Q ss_pred CCEEEEccCCCccccccccCCCCcceeEEEEcCCCCC
Q 008885 199 PRYHIAGSKGVFYAREPYSNVDAVHVTRFLGLAPVGN 235 (550)
Q Consensus 199 PRYhf~Gh~~~f~er~Py~~~~~~~~TRFI~La~~g~ 235 (550)
....|+||.|.+.-..+ ..+.+|..|..+.
T Consensus 226 VdlvlsGH~H~~~~~~~-------~g~~~iv~Ga~g~ 255 (342)
T 3tgh_A 226 VDLYISGHDNNMEVIED-------NDMAHITCGSGSM 255 (342)
T ss_dssp CCEEEECSSSSEEEEEE-------TTEEEEEECCSSC
T ss_pred CCEEEECCCcceeEEee-------CCcEEEEeCcccc
Confidence 99999999886543221 2388888887654
No 55
>1g5b_A Serine/threonine protein phosphatase; bacteriophage lambda, Ser/Thr protein phosphatase, ppase, manganese, sulfate, viral protein; 2.15A {Enterobacteria phage lambda} SCOP: d.159.1.3
Probab=97.99 E-value=4.1e-06 Score=80.77 Aligned_cols=67 Identities=15% Similarity=0.183 Sum_probs=47.9
Q ss_pred CCEEEEEcCCCCChHHHHHHHHHHhhhcCCCcEEEEecCCCCCChhhHHHHHHHhcccCCCCccEEEEecCCCC
Q 008885 3 PPRILLCGDVLGRLNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSSELLDEFMNYVEGRSEIPIPTYFIGDYGVG 76 (550)
Q Consensus 3 ~~KILv~GDvhG~~~~l~~kv~~l~~k~GpfD~li~~GDff~~~~~~~~~~~~~l~g~~~~p~ptyfv~GNhe~ 76 (550)
.|||+++||+||+++.+.+.++.+... ...|.+|++||+....... .+..+++. ..++++|.||||.
T Consensus 12 ~~~i~visDiHg~~~~l~~~l~~~~~~-~~~d~~i~~GD~~~~g~~~-~~~~~~l~-----~~~~~~v~GNhd~ 78 (221)
T 1g5b_A 12 YRNIWVVGDLHGCYTNLMNKLDTIGFD-NKKDLLISVGDLVDRGAEN-VECLELIT-----FPWFRAVRGNHEQ 78 (221)
T ss_dssp CSCEEEECCCTTCHHHHHHHHHHHTCC-TTTCEEEECSCCSSSSSCH-HHHHGGGG-----STTEEECCCHHHH
T ss_pred CceEEEEEcCCCCHHHHHHHHHHccCC-CCCCEEEEeCCccCCCCCh-HHHHHHHh-----cCCEEEEccCcHH
Confidence 489999999999998877666665432 2479999999997643322 23444442 2489999999973
No 56
>2dfj_A Diadenosinetetraphosphatase; helices and strands mixture, hydrolase; 2.72A {Shigella flexneri 2A}
Probab=97.93 E-value=4.7e-06 Score=83.88 Aligned_cols=68 Identities=18% Similarity=0.210 Sum_probs=47.3
Q ss_pred CEEEEEcCCCCChHHHHHHHHHHhhhcCCCcEEEEecCCCCCChhhHHHHHHHhcccCCCCccEEEEecCCCC
Q 008885 4 PRILLCGDVLGRLNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSSELLDEFMNYVEGRSEIPIPTYFIGDYGVG 76 (550)
Q Consensus 4 ~KILv~GDvhG~~~~l~~kv~~l~~k~GpfD~li~~GDff~~~~~~~~~~~~~l~g~~~~p~ptyfv~GNhe~ 76 (550)
|||+|+||+||+++.+.+.++.+... .+.|.+|++||+..-..... +..+++ ..++.++++|.||||.
T Consensus 1 M~i~vigDiHG~~~~l~~ll~~~~~~-~~~d~~v~lGD~vdrG~~s~-~~l~~l---~~l~~~~~~v~GNHe~ 68 (280)
T 2dfj_A 1 MATYLIGDVHGCYDELIALLHKVEFT-PGKDTLWLTGDLVARGPGSL-DVLRYV---KSLGDSVRLVLGNHDL 68 (280)
T ss_dssp -CEEEECCCCSCHHHHHHHHHHTTCC-TTTCEEEECSCCSSSSSCHH-HHHHHH---HHTGGGEEECCCHHHH
T ss_pred CeEEEEecCCCCHHHHHHHHHHhCCC-CCCCEEEEeCCcCCCCCccH-HHHHHH---HhCCCceEEEECCCcH
Confidence 68999999999999877666655431 24699999999975433222 334444 2344589999999973
No 57
>2qjc_A Diadenosine tetraphosphatase, putative; putative diadenosine tetraphosphatase, monomer, PSI- 2, protein structure initiative, nysgrc; 2.05A {Trypanosoma brucei}
Probab=97.88 E-value=8.6e-06 Score=81.04 Aligned_cols=66 Identities=17% Similarity=0.291 Sum_probs=46.3
Q ss_pred CEEEEEcCCCCChHHHHHHHHHHhhhcCCCcEEEEecCCCCCChhhHHHHHHHhcccCCCCccEEEEecCCCC
Q 008885 4 PRILLCGDVLGRLNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSSELLDEFMNYVEGRSEIPIPTYFIGDYGVG 76 (550)
Q Consensus 4 ~KILv~GDvhG~~~~l~~kv~~l~~k~GpfD~li~~GDff~~~~~~~~~~~~~l~g~~~~p~ptyfv~GNhe~ 76 (550)
+||+++||+||+++.+.+.++.+.. .++.|.+|++||+........ +..+++. . .++|+|.||||.
T Consensus 19 ~~i~visDiHg~~~~l~~~l~~~~~-~~~~d~ii~~GD~vd~g~~~~-~~l~~l~---~--~~~~~v~GNHd~ 84 (262)
T 2qjc_A 19 GRVIIVGDIHGCRAQLEDLLRAVSF-KQGSDTLVAVGDLVNKGPDSF-GVVRLLK---R--LGAYSVLGNHDA 84 (262)
T ss_dssp SCEEEECCCTTCHHHHHHHHHHHTC-CTTTSEEEECSCCSSSSSCHH-HHHHHHH---H--HTCEECCCHHHH
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHhc-cCCCCEEEEecCCCCCCCCHH-HHHHHHH---H--CCCEEEeCcChH
Confidence 4999999999999887666665543 224599999999975433222 3334442 1 479999999973
No 58
>3ive_A Nucleotidase; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics, nysgxrc; HET: CTN; 1.70A {Escherichia coli O6} PDB: 3ivd_A*
Probab=97.82 E-value=0.00099 Score=72.36 Aligned_cols=204 Identities=14% Similarity=0.092 Sum_probs=104.4
Q ss_pred CCEEEEEcCCCCChH------------------HHHHHHHHHhhhcCCCcEEEE-ecCCCCCChh----hHHHHHHHhcc
Q 008885 3 PPRILLCGDVLGRLN------------------QLFKRVQSVNKSAGPFDAVLC-VGQFFPDSSE----LLDEFMNYVEG 59 (550)
Q Consensus 3 ~~KILv~GDvhG~~~------------------~l~~kv~~l~~k~GpfD~li~-~GDff~~~~~----~~~~~~~~l~g 59 (550)
.++||.++|+||++. .+...++.+.+++ + |+|++ +||++..... ..+.+.+.+
T Consensus 6 ~l~Il~tnD~Hg~~~~~~~~~~~~~~~~~gG~a~la~~i~~~r~~~-~-~~llldaGD~~~g~~~~~~~~g~~~~~~l-- 81 (509)
T 3ive_A 6 DVTIIYTNDLHAHVEPYKVPWIADGKRDIGGWANITTLVKQEKAKN-K-ATWFFDAGDYFTGPYISSLTKGKAIIDIM-- 81 (509)
T ss_dssp EEEEEEECCCTTCCSCBCCTTSGGGTSCBCCHHHHHHHHHHHHHHC-S-SEEEEECSCCSSSSHHHHTTTTHHHHHHH--
T ss_pred EEEEEEEccccCCccCcccccccCCCcCcCCHHHHHHHHHHHHhcC-C-CeEEEECCCCCCCchhhhhcCChHHHHHH--
Confidence 479999999998753 4455555555544 3 66666 9998754210 011233444
Q ss_pred cCCCCccEEEEecCCCChH---HHHHHhhccccccCcccCCceecCcEEEcC--------CCCeEEEcCeEEEEEeCccC
Q 008885 60 RSEIPIPTYFIGDYGVGAA---KVLLAASKNSANQGFKMDGFKVTDNLFWLK--------GSGNFTLHGLSVAYLSGRQS 128 (550)
Q Consensus 60 ~~~~p~ptyfv~GNhe~~~---~~l~~l~~~~~~~~~~~~g~ei~~Nl~~Lg--------~~gv~~i~GlrIa~lgG~~~ 128 (550)
..+.. -+++.||||... .+.+.+.. .+-..++.|++.-. ..-+++.+|++|+.+|-...
T Consensus 82 -n~lg~-D~~tlGNHEfd~G~~~l~~~l~~--------~~~p~l~aNv~~~~~~~p~~~~py~i~e~~G~kIgiiG~t~~ 151 (509)
T 3ive_A 82 -NTMPF-DAVTIGNHEFDHGWDNTLLQLSQ--------AKFPIVQGNIFYQNSSKSFWDKPYTIIEKDGVKIGVIGLHGV 151 (509)
T ss_dssp -TTSCC-SEECCCGGGGTTCHHHHHHHHTT--------CSSCBCCCSEEETTSCCBSSSCSEEEEEETTEEEEEEEEECH
T ss_pred -HhcCC-cEEeecccccccCHHHHHHHHhh--------CCCCEEEEEEEECCCCCccCcCCeEEEEECCEEEEEEecccC
Confidence 33433 367789999432 23333331 11235778887532 12355789999999987421
Q ss_pred ------CC-CC-CCCCCCH--HHHHH-HHHhhcCCCCcc--EEEeCCCCccccccccccccccccCCCCCCcHHHHHHHH
Q 008885 129 ------SE-GQ-QFGTYSQ--DDVDA-LRALAEEPGIVD--LFLTNEWPSGVTNKAAASDMLVGISDSSNTDSTVSELVA 195 (550)
Q Consensus 129 ------~~-~~-~~~~~te--~di~~-L~~l~~~~~~vD--ILLTh~wP~gi~~~~~~~~~~~~~~~~~~Gs~~i~~l~~ 195 (550)
.. .. ....|.+ +.+++ +..+. ..+| |+|+|.--.+-.. .. ... ....|...-.++++
T Consensus 152 ~~~~~~~~~~~~~g~~~~d~~~~~~~~v~~Lk---~~~D~iIvl~H~G~~~~~~-~~---~~~---~~~~~~~~d~~la~ 221 (509)
T 3ive_A 152 FAFNDTVSAATRVGIEARDEIKWLQRYIDELK---GKVDLTVALIHEGVPARQS-SM---GGT---DVRRALDKDIQTAS 221 (509)
T ss_dssp HHHHHHSCGGGCTTEEECCHHHHHHHHHHHHT---TTCSEEEEEEECSSCCCCC-CC---------CCCCCCHHHHHHHH
T ss_pred cccccccccccCCCCEEcCHHHHHHHHHHHHH---hcCCEEEEEeccCcCCccc-cc---ccc---ccccccchHHHHHh
Confidence 00 00 0112221 22222 22232 2255 4778864211100 00 000 01234444456666
Q ss_pred Hh-CCCEEEEccCCCccccccccCCCCcceeEEEEcCCCCC
Q 008885 196 EI-KPRYHIAGSKGVFYAREPYSNVDAVHVTRFLGLAPVGN 235 (550)
Q Consensus 196 ~l-kPRYhf~Gh~~~f~er~Py~~~~~~~~TRFI~La~~g~ 235 (550)
++ .....++||.|..+.. |. ....|-.+..+.+|.
T Consensus 222 ~~~giDlIlgGHtH~~~~~-~~----~~~~~~ivqag~~g~ 257 (509)
T 3ive_A 222 QVKGLDILITGHAHVGTPE-PI----KVGNTLILSTDSGGI 257 (509)
T ss_dssp HCSSCCEEEEESSCCCCSS-CE----EETTEEEECCCSTTS
T ss_pred cCCCCcEEEeCCcCccCCC-Ce----eeCCEEEEecChhhc
Confidence 54 3679999998865432 11 123466666666654
No 59
>3t1i_A Double-strand break repair protein MRE11A; DNA repair, MRN complex, metallophosphatase, exonuclease, endonuclease, RAD50, NBS1, hydrolase; 3.00A {Homo sapiens}
Probab=97.63 E-value=0.00015 Score=77.14 Aligned_cols=74 Identities=18% Similarity=0.299 Sum_probs=45.7
Q ss_pred CCEEEEEcCCCCCh-----------HHHHHHHHHHhhhcCCCcEEEEecCCCCCCh---hhHHHHHHHhc----c-----
Q 008885 3 PPRILLCGDVLGRL-----------NQLFKRVQSVNKSAGPFDAVLCVGQFFPDSS---ELLDEFMNYVE----G----- 59 (550)
Q Consensus 3 ~~KILv~GDvhG~~-----------~~l~~kv~~l~~k~GpfD~li~~GDff~~~~---~~~~~~~~~l~----g----- 59 (550)
.||||+++|+|-.. ...++++-.+..+. ..|+||++||+|.... .....+.+.|. |
T Consensus 32 ~mrilhiSDlHLg~~~~~~~~~~d~~~~l~~ll~~~~~~-~~D~VliaGDlfd~~~~~~~~~~~~~~~L~r~~~~~~~~~ 110 (431)
T 3t1i_A 32 TFKILVATDIHLGFMEKDAVRGNDTFVTLDEILRLAQEN-EVDFILLGGDLFHENKPSRKTLHTCLELLRKYCMGDRPVQ 110 (431)
T ss_dssp EEEEEEECCCCBTTTSSCTTTTTHHHHHHHHHHHHHHHT-TCSEEEECSCCBSSSSCCHHHHHHHHHHHHHHHBCSSCCC
T ss_pred CEEEEEEeccCCCCcccccchhhhHHHHHHHHHHHHhhc-CCCEEEEcCccccCCCCCHHHHHHHHHHHHHHhccCCccc
Confidence 48999999999532 12333333322333 4799999999986432 22222222222 1
Q ss_pred ------------------------cCCCCccEEEEecCCCCh
Q 008885 60 ------------------------RSEIPIPTYFIGDYGVGA 77 (550)
Q Consensus 60 ------------------------~~~~p~ptyfv~GNhe~~ 77 (550)
...+.+|+|+|.||||.+
T Consensus 111 ~~~lsd~~~~~~~~~~~~~ny~d~n~~~~ipV~~I~GNHD~~ 152 (431)
T 3t1i_A 111 FEILSDQSVNFGFSKFPWVNYQDGNLNISIPVFSIHGNHDDP 152 (431)
T ss_dssp CEECSCC------------------CCBCSCEEECCCSSSCC
T ss_pred ceeccchhhccccccccccccccccccCCCcEEEEccCCCCc
Confidence 124579999999999976
No 60
>3h63_A Serine/threonine-protein phosphatase 5; metalloenzyme, inhibitors, drug design, cytoplasm, hydrolase, iron, manganese, metal-binding, nucleus; HET: NHC; 1.30A {Homo sapiens} SCOP: d.159.1.3 PDB: 3h60_A* 3h61_A* 3h62_C* 3h64_A* 3h66_A 3h67_A* 3h68_A* 3h69_A* 1s95_A
Probab=97.61 E-value=7.9e-05 Score=75.99 Aligned_cols=74 Identities=14% Similarity=0.187 Sum_probs=48.6
Q ss_pred CCEEEEEcCCCCChHHHHHHHHHHhhhcCCCcEEEEecCCCCCChhhHHHHHHHhcccCCCCccEEEEecCCCCh
Q 008885 3 PPRILLCGDVLGRLNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSSELLDEFMNYVEGRSEIPIPTYFIGDYGVGA 77 (550)
Q Consensus 3 ~~KILv~GDvhG~~~~l~~kv~~l~~k~GpfD~li~~GDff~~~~~~~~~~~~~l~g~~~~p~ptyfv~GNhe~~ 77 (550)
.+||.|+||+||++..|.+.++..... ..-+.+|++||+..-+....+.+.-++.-+...|-.++++-||||..
T Consensus 59 ~~ri~viGDIHG~~~~L~~ll~~~g~~-~~~~~~vflGD~VDRG~~s~evl~lL~~lk~~~p~~v~~lrGNHE~~ 132 (315)
T 3h63_A 59 TEKITVCGDTHGQFYDLLNIFELNGLP-SETNPYIFNGDFVDRGSFSVEVILTLFGFKLLYPDHFHLLRGNHETD 132 (315)
T ss_dssp TCEEEEECCCTTCHHHHHHHHHHHCCC-BTTBCEEEESCCSSSSTTHHHHHHHHHHHHHHSTTTEEEECCTTSSH
T ss_pred CceEEEEecCCCCHHHHHHHHHHhCCC-CCCCEEEEeCCccCCCcChHHHHHHHHHhhhhcCCcEEEEecCcccc
Confidence 378999999999999987766543221 12356999999976544433333322211133456699999999964
No 61
>3icf_A PPT, serine/threonine-protein phosphatase T; IRO metalloprotein, structural genomics, PSI-2, protein structu initiative; 2.30A {Saccharomyces cerevisiae}
Probab=97.58 E-value=8.5e-05 Score=76.35 Aligned_cols=74 Identities=18% Similarity=0.239 Sum_probs=49.1
Q ss_pred CCEEEEEcCCCCChHHHHHHHHHHhhhcCCCcEEEEecCCCCCChhhHHHHHHHhcccCCCCccEEEEecCCCCh
Q 008885 3 PPRILLCGDVLGRLNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSSELLDEFMNYVEGRSEIPIPTYFIGDYGVGA 77 (550)
Q Consensus 3 ~~KILv~GDvhG~~~~l~~kv~~l~~k~GpfD~li~~GDff~~~~~~~~~~~~~l~g~~~~p~ptyfv~GNhe~~ 77 (550)
.|||.||||+||++..|.+.++.+... ..-+.+|++||+..-+....+.+.-++.-+...|-.++++-||||..
T Consensus 63 ~~ri~viGDIHG~~~~L~~ll~~~g~~-~~~~~~vflGD~VDRG~~s~evl~lL~~lk~~~p~~v~llrGNHE~~ 136 (335)
T 3icf_A 63 DVKISVCGDTHGQFYDVLNLFRKFGKV-GPKHTYLFNGDFVDRGSWSCEVALLFYCLKILHPNNFFLNRGNHESD 136 (335)
T ss_dssp TCEEEEECCCTTCHHHHHHHHHHHCCC-BTTEEEEECSCCSSSSTTHHHHHHHHHHHHHHCTTTEEECCCTTSSH
T ss_pred CceEEEEecCCCCHHHHHHHHHHcCCC-CCCcEEEEeCCccCCCcChHHHHHHHHHHhhhCCCcEEEecCchhhh
Confidence 378999999999999987766554221 12356999999976544433333322221234566699999999963
No 62
>2ie4_C PP2A-alpha;, serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform; protein-protein complex, heat repeat, signaling protein; HET: OKA; 2.60A {Homo sapiens} SCOP: d.159.1.3 PDB: 2npp_C* 3dw8_C* 3k7v_C* 3k7w_C* 3c5w_C 2ie3_C* 3fga_C* 2iae_C* 3p71_C* 2nym_C* 2nyl_C*
Probab=97.57 E-value=6.4e-05 Score=76.59 Aligned_cols=72 Identities=14% Similarity=0.240 Sum_probs=48.6
Q ss_pred CCEEEEEcCCCCChHHHHHHHHHHhhhcCCCcEEEEecCCCCCChhhHHHHHHHhcc-cCCCCccEEEEecCCCCh
Q 008885 3 PPRILLCGDVLGRLNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSSELLDEFMNYVEG-RSEIPIPTYFIGDYGVGA 77 (550)
Q Consensus 3 ~~KILv~GDvhG~~~~l~~kv~~l~~k~GpfD~li~~GDff~~~~~~~~~~~~~l~g-~~~~p~ptyfv~GNhe~~ 77 (550)
.++|+|+||+||++..+.+.++.+.. .+.|.+|++||+..-+....+. ..++.. +...|-.++++-||||..
T Consensus 49 ~~~i~viGDIHG~~~~L~~ll~~~~~--~~~~~~vflGD~VDRG~~s~ev-l~lL~~lk~~~p~~v~~lrGNHE~~ 121 (309)
T 2ie4_C 49 RCPVTVCGDVHGQFHDLMELFRIGGK--SPDTNYLFMGDYVDRGYYSVET-VTLLVALKVRYRERITILRGNHESR 121 (309)
T ss_dssp CSSEEEECCCTTCHHHHHHHHHHHCC--TTTSCEEECSCCSSSSTTHHHH-HHHHHHHHHHCTTTEEECCCTTSST
T ss_pred cCCEEEEecCCCCHHHHHHHHHHcCC--CCCCEEEEeCCccCCCCChHHH-HHHHHHHHhhCCCcEEEEeCCCCHH
Confidence 46899999999999988766654422 2457789999997544333333 233321 123456699999999974
No 63
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.56 E-value=8.1e-05 Score=80.08 Aligned_cols=74 Identities=14% Similarity=0.187 Sum_probs=49.5
Q ss_pred CCEEEEEcCCCCChHHHHHHHHHHhhhcCCCcEEEEecCCCCCChhhHHHHHHHhcccCCCCccEEEEecCCCCh
Q 008885 3 PPRILLCGDVLGRLNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSSELLDEFMNYVEGRSEIPIPTYFIGDYGVGA 77 (550)
Q Consensus 3 ~~KILv~GDvhG~~~~l~~kv~~l~~k~GpfD~li~~GDff~~~~~~~~~~~~~l~g~~~~p~ptyfv~GNhe~~ 77 (550)
.|||+||||+||++..|.+.++.+.. .++-|.+|++||+..-+....+.+.-++.-+...|-.++++.||||..
T Consensus 212 ~~~~~vigDiHG~~~~l~~~l~~~~~-~~~~~~~v~lGD~vdrG~~s~e~~~~l~~l~~~~~~~~~~lrGNHE~~ 285 (477)
T 1wao_1 212 TEKITVCGDTHGQFYDLLNIFELNGL-PSETNPYIFNGDFVDRGSFSVEVILTLFGFKLLYPDHFHLLRGNHETD 285 (477)
T ss_dssp SCEEEEECBCTTCHHHHHHHHHHHCC-CBTTBCEEEESCCSSSSTTHHHHHHHHHHHHHHSTTTEEEECCTTSSH
T ss_pred CcceEEEeCCCCCHHHHHHHHHHcCC-CCCcCeEEEeccccCCCcchHHHHHHHHHHHhhCCCceEeecCCccHH
Confidence 37899999999999988766655432 123467999999975443333333333211234567899999999963
No 64
>2z72_A Protein-tyrosine-phosphatase; cold-active enzyme, psychrophIle, hydrolase; 1.10A {Shewanella SP} PDB: 1v73_A 2zbm_A
Probab=97.55 E-value=5.2e-05 Score=78.33 Aligned_cols=73 Identities=8% Similarity=0.075 Sum_probs=48.0
Q ss_pred CCEEEEEcCCCCChHHHHHHHHHHhhhc------CCCcEEEEecCCCCCChhhHHHHHHHhcccC----CCCccEEEEec
Q 008885 3 PPRILLCGDVLGRLNQLFKRVQSVNKSA------GPFDAVLCVGQFFPDSSELLDEFMNYVEGRS----EIPIPTYFIGD 72 (550)
Q Consensus 3 ~~KILv~GDvhG~~~~l~~kv~~l~~k~------GpfD~li~~GDff~~~~~~~~~~~~~l~g~~----~~p~ptyfv~G 72 (550)
.|||+|+||+||+++.+.+.++.+.... ...|.+|++||+..-.....+ ..+++.... ..|..++++.|
T Consensus 70 ~~~i~vigDiHG~~~~l~~ll~~~~~~~~~~~~~~~~d~~v~lGD~vdrG~~s~e-vl~~l~~l~~~~~~~~~~v~~v~G 148 (342)
T 2z72_A 70 IKKVVALSDVHGQYDVLLTLLKKQKIIDSDGNWAFGEGHMVMTGDIFDRGHQVNE-VLWFMYQLDQQARDAGGMVHLLMG 148 (342)
T ss_dssp CCEEEEECCCTTCHHHHHHHHHHTTSBCTTSCBCCTTCEEEECSCCSSSSSCHHH-HHHHHHHHHHHHHHTTCEEEECCC
T ss_pred CCCEEEEECCCCCHHHHHHHHHhcCCCcccccccCCCCEEEEECCCcCCCCCHHH-HHHHHHHHHHHHhhCCCeEEEEec
Confidence 4799999999999988766665432110 136999999999754332222 223332111 35667999999
Q ss_pred CCCC
Q 008885 73 YGVG 76 (550)
Q Consensus 73 Nhe~ 76 (550)
|||.
T Consensus 149 NHE~ 152 (342)
T 2z72_A 149 NHEQ 152 (342)
T ss_dssp HHHH
T ss_pred CCcH
Confidence 9974
No 65
>1fjm_A Protein serine/threonine phosphatase-1 (alpha ISO 1); hydrolase, toxin, hydrolase-hydrolase inhibitor complex; HET: 1ZN; 2.10A {Oryctolagus cuniculus} SCOP: d.159.1.3
Probab=97.51 E-value=7.2e-05 Score=76.86 Aligned_cols=73 Identities=15% Similarity=0.283 Sum_probs=48.9
Q ss_pred CCEEEEEcCCCCChHHHHHHHHHHhhhcCCCcEEEEecCCCCCChhhHHHHHHHhcccCCCCccEEEEecCCCCh
Q 008885 3 PPRILLCGDVLGRLNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSSELLDEFMNYVEGRSEIPIPTYFIGDYGVGA 77 (550)
Q Consensus 3 ~~KILv~GDvhG~~~~l~~kv~~l~~k~GpfD~li~~GDff~~~~~~~~~~~~~l~g~~~~p~ptyfv~GNhe~~ 77 (550)
.++|+||||+||+++.|.+.++.+.. .+-|.+|++||+..-+....+.+.-++.-+...|-.++++-||||..
T Consensus 56 ~~~i~viGDIHG~~~~L~~ll~~~g~--~~~~~~vflGD~VDRG~~s~evl~lL~~lk~~~p~~v~~lrGNHE~~ 128 (330)
T 1fjm_A 56 EAPLKICGDIHGQYYDLLRLFEYGGF--PPESNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECA 128 (330)
T ss_dssp CSSEEEECBCTTCHHHHHHHHHHHCS--TTSSCEEECSCCSSSSSCHHHHHHHHHHHHHHSTTTEEECCCTTSSH
T ss_pred cCceEEecCCCCCHHHHHHHHHHhCC--CCcceEEeCCCcCCCCCChHHHHHHHHHhhhhcCCceEEecCCchHh
Confidence 46899999999999998776665432 24588999999975443333333222211123456699999999964
No 66
>1z84_A Galactose-1-phosphate uridyl transferase-like protein; GALT, zinc, AMP, structural genomics, protein structure initiative, CESG; HET: AMP; 1.83A {Arabidopsis thaliana} SCOP: d.13.1.2 d.13.1.2 PDB: 1zwj_A 2q4h_A* 2q4l_A 2h39_A*
Probab=97.51 E-value=0.00069 Score=70.19 Aligned_cols=111 Identities=12% Similarity=0.110 Sum_probs=73.7
Q ss_pred CCcccCCCCCCCcceEEE-----ECCEEEEEecCCCCCC------------C-----------eEEEEeccccCCCCCCC
Q 008885 390 ECWFCLSSPSVESHLIVS-----VGEYYYCALPKGPLVE------------D-----------HVLVIPVEHVPNTISTS 441 (550)
Q Consensus 390 ~C~FC~~~~~~~~hliis-----~g~~~yl~l~kgpl~~------------g-----------H~lIiP~~H~~s~~~l~ 441 (550)
.|.||-.+......-+.. -+-.++++.+++|..+ | ++||.+-+|..++.+|+
T Consensus 62 ~CpfCpg~~~~t~~e~~~~~~~~~~~~~~v~~N~fP~l~~~~~~~~~~~~~~l~~~~~~~G~~~Vii~sp~H~~~l~~ls 141 (351)
T 1z84_A 62 SCPFCIGREQECAPELFRVPDHDPNWKLRVIENLYPALSRNLETQSTQPETGTSRTIVGFGFHDVVIESPVHSIQLSDID 141 (351)
T ss_dssp CCTTSTTCGGGSSCEEEEESTTCSSCSEEEEECSSCSSBGGGTTTC--------CEEECBCEEEEEECCSSSSCCGGGSC
T ss_pred CCcCCCCCcccCCcccccccccCCCceEEEEcCCCccccCCCCCcccccccchhhccccCcceEEEEeCCCCCCCcHHCC
Confidence 699999875432222333 2567899999999773 5 88999999999999999
Q ss_pred HHHHHHHHHHH-HHHHHHHhhcCC-ceEEEeec----CCCcCeEEEEEeecCCC------chHHHHHHHHH
Q 008885 442 PECEKELGRFQ-NSLMMYYKNQGK-EAVFFEWL----SKRGTHANLQAVPIPTS------KAAAVQDIFNL 500 (550)
Q Consensus 442 ~~~~~Ei~~~~-~~L~~~~~~~~~-~~v~~E~~----~~~~~H~hi~~vPvp~~------~~~~~~~~F~~ 500 (550)
.+.+.++..+- +.+..+.+..+. .+.+||+. .-...|.|.|++-.|.- ..+.++.||++
T Consensus 142 ~~e~~~vi~~~~~~~~~L~~~~~~~yv~iF~N~G~~aGaSl~HpH~QI~a~~~~p~~~~~e~~~~~~y~~~ 212 (351)
T 1z84_A 142 PVGIGDILIAYKKRINQIAQHDSINYIQVFKNQGASAGASMSHSHSQMMALPVVPPTVSSRLDGTKDYFEE 212 (351)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCTTCCEEEEEEEESGGGTCCCSSCEEEEEEESSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCCEEEEEEEcCcccCCCCcCccceeEecCcCChHHHHHHHHHHHHHhh
Confidence 99888887644 444444433333 45667721 12246888888876543 12356667765
No 67
>3e7a_A PP-1A, serine/threonine-protein phosphatase PP1-alpha Ca subunit; carbohydrate metabolism, cell cycle, cell division; HET: 1ZN; 1.63A {Homo sapiens} SCOP: d.159.1.3 PDB: 3e7b_A* 3egg_A* 3egh_A* 3hvq_A 3v4y_A* 3n5u_A 1jk7_A* 1it6_A* 2bcd_A* 2bdx_A* 2o8g_A 2o8a_A 1u32_A* 1s70_A*
Probab=97.42 E-value=0.00012 Score=74.23 Aligned_cols=73 Identities=15% Similarity=0.283 Sum_probs=49.0
Q ss_pred CCEEEEEcCCCCChHHHHHHHHHHhhhcCCCcEEEEecCCCCCChhhHHHHHHHhcccCCCCccEEEEecCCCCh
Q 008885 3 PPRILLCGDVLGRLNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSSELLDEFMNYVEGRSEIPIPTYFIGDYGVGA 77 (550)
Q Consensus 3 ~~KILv~GDvhG~~~~l~~kv~~l~~k~GpfD~li~~GDff~~~~~~~~~~~~~l~g~~~~p~ptyfv~GNhe~~ 77 (550)
.++|.|+||+||++..|.+.++.+.. .+.|.+|++||+..-+....+.+.-++.-+...|-.++++-||||..
T Consensus 55 ~~~i~viGDIHG~~~~L~~ll~~~g~--~~~~~~vfLGD~VDrG~~s~evl~lL~~lk~~~p~~v~~lrGNHE~~ 127 (299)
T 3e7a_A 55 EAPLKICGDIHGQYYDLLRLFEYGGF--PPESNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECA 127 (299)
T ss_dssp CSSEEEECBCTTCHHHHHHHHHHHCS--TTSSCEEECSCCSSSSSCHHHHHHHHHHHHHHSTTTEEECCCTTSSH
T ss_pred CCCEEEEecCCCCHHHHHHHHHHhCC--CCCccEEeCCcccCCCCCcHHHHHHHHHHHhhCCCcEEEEecCchhh
Confidence 36799999999999998766654322 24578999999976544333333222211234566799999999964
No 68
>1aui_A Calcineurin, serine/threonine phosphatase 2B; hydrolase, immunosuppression; 2.10A {Homo sapiens} SCOP: d.159.1.3
Probab=97.37 E-value=0.00016 Score=77.85 Aligned_cols=73 Identities=14% Similarity=0.230 Sum_probs=48.5
Q ss_pred CCEEEEEcCCCCChHHHHHHHHHHhhhcCCCcEEEEecCCCCCChhhHHHHHHHhcccCCCCccEEEEecCCCCh
Q 008885 3 PPRILLCGDVLGRLNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSSELLDEFMNYVEGRSEIPIPTYFIGDYGVGA 77 (550)
Q Consensus 3 ~~KILv~GDvhG~~~~l~~kv~~l~~k~GpfD~li~~GDff~~~~~~~~~~~~~l~g~~~~p~ptyfv~GNhe~~ 77 (550)
.++|.||||+||++..|.+.++ +.. ..+.|.+|++||+..-+....+.+.-++.-+...|-.++++-||||..
T Consensus 82 ~~pI~VIGDIHGq~~dL~~LL~-~~g-~p~~d~yVFLGDyVDRGp~S~Evl~lL~aLk~~~P~~v~lLRGNHE~~ 154 (521)
T 1aui_A 82 DAPVTVCGDIHGQFFDLMKLFE-VGG-SPANTRYLFLGDYVDRGYFSIECVLYLWALKILYPKTLFLLRGNHECR 154 (521)
T ss_dssp CSSEEEECCCTTCHHHHHHHHH-HHC-CTTTCCEEECSCCSSSSSCHHHHHHHHHHHHHHSTTTEEECCCTTSSH
T ss_pred ccceeeccCCCCCHHHHHHHHH-hcC-CCCcceEEEcCCcCCCCCCHHHHHHHHHHHhhhCCCeEEEecCCccHH
Confidence 4689999999999999877665 222 235689999999975443323322222211123455699999999964
No 69
>3ztv_A NAD nucleotidase, NADN; hydrolase, NAD pyrophosphatase, NMN nucleotidase, periplasmi enzyme, CD73; HET: ADN; 1.30A {Haemophilus influenzae} PDB: 3zu0_A*
Probab=97.36 E-value=0.0097 Score=65.61 Aligned_cols=110 Identities=16% Similarity=0.024 Sum_probs=64.8
Q ss_pred CEEEEEcCCCCChH---------------------HHHHHHHHHhhhcCCCcEEEEecCCCCCChh----hHHHHHHHhc
Q 008885 4 PRILLCGDVLGRLN---------------------QLFKRVQSVNKSAGPFDAVLCVGQFFPDSSE----LLDEFMNYVE 58 (550)
Q Consensus 4 ~KILv~GDvhG~~~---------------------~l~~kv~~l~~k~GpfD~li~~GDff~~~~~----~~~~~~~~l~ 58 (550)
++||.++|+||++. ++...++.+.+++ +-.++|.+||++..... .-+...+.|
T Consensus 13 l~Il~tnD~Hg~~~~~~~~~~~~~~~~~~~~gG~arla~~i~~~r~~~-~~~l~l~~GD~~~gs~~~~~~~g~~~~~~l- 90 (579)
T 3ztv_A 13 LSILHINDHHSYLEPHETRINLNGQQTKVDIGGFSAVNAKLNKLRKKY-KNPLVLHAGDAITGTLYFTLFGGSADAAVM- 90 (579)
T ss_dssp EEEEEECCCTTCCSCEEEEEEETTEEEEEEECCHHHHHHHHHHHHHHS-SSEEEEECSCCSCSSHHHHTTTTHHHHHHH-
T ss_pred EEEEEeCccccCccCCccccccCCcccccccCCHHHHHHHHHHHHhhC-CCEEEEeCCCCCCCceeeeecCCHHHHHHH-
Confidence 78999999999854 3445555555554 44699999999754210 001122232
Q ss_pred ccCCCCccEEEEecCCCChHH--HH-HHhhccccccCcccCCceecCcEEEcC---------CCCeEEEcCeEEEEEeCc
Q 008885 59 GRSEIPIPTYFIGDYGVGAAK--VL-LAASKNSANQGFKMDGFKVTDNLFWLK---------GSGNFTLHGLSVAYLSGR 126 (550)
Q Consensus 59 g~~~~p~ptyfv~GNhe~~~~--~l-~~l~~~~~~~~~~~~g~ei~~Nl~~Lg---------~~gv~~i~GlrIa~lgG~ 126 (550)
..+.+ -+++.||||.... .+ ..+.. .+-..++.|++... ..-+++.+|++|+.+|=.
T Consensus 91 --n~lg~-D~~tlGNHEfd~G~~~l~~~~~~--------~~fp~l~aNv~~~~~~~~~~~~~py~i~~~~G~kIgviG~t 159 (579)
T 3ztv_A 91 --NAGNF-HYFTLGNHEFDAGNEGLLKLLEP--------LKIPVLSANVIPDKSSILYNKWKPYDIFTVDGEKIAIIGLD 159 (579)
T ss_dssp --HHHTC-SEEECCSGGGTTHHHHHHHHHTT--------CCSCEECSSEEECTTSTTTTSCBSEEEEEETTEEEEEEEEE
T ss_pred --HhcCc-CeeeccccccccCHHHHHHHHHh--------cCCCeeeeeEeccCCcccccccCCeEEEEECCEEEEEEEEE
Confidence 22223 3578899985432 22 22221 12235778887532 123556899999999873
No 70
>3ll8_A Serine/threonine-protein phosphatase 2B catalytic alpha isoform; protein-peptide docking, protein targeting, AKA beta-augmentation, calmodulin-binding, membrane, hydrolase; 2.00A {Homo sapiens} PDB: 2p6b_A 1m63_A* 1tco_A* 1mf8_A* 2jog_A
Probab=97.30 E-value=0.00022 Score=73.71 Aligned_cols=73 Identities=12% Similarity=0.200 Sum_probs=48.8
Q ss_pred CCEEEEEcCCCCChHHHHHHHHHHhhhcCCCcEEEEecCCCCCChhhHHHHHHHhcccCCCCccEEEEecCCCCh
Q 008885 3 PPRILLCGDVLGRLNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSSELLDEFMNYVEGRSEIPIPTYFIGDYGVGA 77 (550)
Q Consensus 3 ~~KILv~GDvhG~~~~l~~kv~~l~~k~GpfD~li~~GDff~~~~~~~~~~~~~l~g~~~~p~ptyfv~GNhe~~ 77 (550)
.++|.|+||+||++..|.+.++... ..+.|.+|++||+..-+....+.+.-++.-+...|-.++++-||||..
T Consensus 69 ~~pi~ViGDIHG~~~dL~~ll~~~g--~~~~~~~vfLGD~VDRG~~s~Evl~lL~~lk~~~p~~v~llrGNHE~~ 141 (357)
T 3ll8_A 69 DAPVTVCGDIHGQFFDLMKLFEVGG--SPANTRYLFLGDYVDRGYFSIECVLYLWALKILYPKTLFLLRGNHECR 141 (357)
T ss_dssp CSSEEEECCCTTCHHHHHHHHHHHC--CTTTCCEEECSCCSSSSTTHHHHHHHHHHHHHHCTTTEEECCCTTSSH
T ss_pred cccceeeccCCCCHHHHHHHHHhcC--CCCCcEEEECCCccCCCcChHHHHHHHHHhhhhcCCcEEEEeCchhhh
Confidence 3579999999999998876554321 224688999999976544333333322221234556699999999963
No 71
>2z1a_A 5'-nucleotidase; metal-binding, nucleotide-binding, hydrolase, structural genomics, NPPSFA; HET: THM; 1.75A {Thermus thermophilus} SCOP: d.114.1.1 d.159.1.2
Probab=97.29 E-value=0.014 Score=63.98 Aligned_cols=111 Identities=10% Similarity=-0.088 Sum_probs=65.7
Q ss_pred CCEEEEEcCCCCCh-----------------HHHHHHHHHHhhhcCCCcEEEEecCCCCCChh----hHHHHHHHhcccC
Q 008885 3 PPRILLCGDVLGRL-----------------NQLFKRVQSVNKSAGPFDAVLCVGQFFPDSSE----LLDEFMNYVEGRS 61 (550)
Q Consensus 3 ~~KILv~GDvhG~~-----------------~~l~~kv~~l~~k~GpfD~li~~GDff~~~~~----~~~~~~~~l~g~~ 61 (550)
.++||.++|+||++ ..+...++++.+.+ |-.++|.+||++..... ....+.+.+ .
T Consensus 29 ~l~Il~~~D~H~~~~~~~~~~~~~~~~~gg~~~~~~~v~~~r~~~-~~~l~l~~GD~~~gs~~~~~~~~~~~~~~l---n 104 (552)
T 2z1a_A 29 TLTLVHTNDTHAHLEPVELTLSGEKTPVGGVARRVALFDRVWARA-KNPLFLDAGDVFQGTLYFNQYRGLADRYFM---H 104 (552)
T ss_dssp EEEEEEECCCTTCCSCEEEECSSSEEEECCHHHHHHHHHHHHHHS-SSEEEEECSCCSSSSHHHHHHTTHHHHHHH---H
T ss_pred eEEEEEEcccccCcccccccCcccccccCCHHHHHHHHHHHHhhC-CCEEEEeCCCCCCCcHHHHHhCCcHHHHHH---H
Confidence 37899999999864 35556666666554 43488999999754211 011223333 2
Q ss_pred CCCccEEEEecCCCChH---HHHHHhhccccccCcccCCceecCcEEEcC---------CCCeEEEcCeEEEEEeCc
Q 008885 62 EIPIPTYFIGDYGVGAA---KVLLAASKNSANQGFKMDGFKVTDNLFWLK---------GSGNFTLHGLSVAYLSGR 126 (550)
Q Consensus 62 ~~p~ptyfv~GNhe~~~---~~l~~l~~~~~~~~~~~~g~ei~~Nl~~Lg---------~~gv~~i~GlrIa~lgG~ 126 (550)
.+.. .+++.||||... .+.+.+.. .+-..++.|+..-+ ..-+++.+|++|+.+|=.
T Consensus 105 ~lg~-d~~~lGNHEfd~g~~~l~~~l~~--------~~~~~L~aNv~~~~~~~~~~~~~~~~i~~~~G~kIgiiG~~ 172 (552)
T 2z1a_A 105 RLRY-RAMALGNHEFDLGPGPLADFLKG--------ARFKVVSANVDASREPRLKGLFAPYAVVVVGGERVGIIGLT 172 (552)
T ss_dssp HTTC-CEEECCGGGGTTCHHHHHHHHTT--------CCSEEECTTEECTTCGGGTTSCBSEEEEEETTEEEEEEEEE
T ss_pred hcCC-CccccccccccCCHHHHHHHHhh--------CCCCEEEEEEecCCCcccccccCCeEEEEECCEEEEEEEec
Confidence 3333 488999998642 23333321 12235667876422 122556789999998754
No 72
>2wdc_A SOXB, sulfur oxidation protein SOXB; sulfur-sulfur hydrolysis, sulfur oxidation pathway, Cys S-thiosulfonate, hydrolase; 1.50A {Thermus thermophilus} PDB: 2wdd_A* 2wde_A 2wdf_A
Probab=97.10 E-value=0.012 Score=64.73 Aligned_cols=172 Identities=10% Similarity=0.034 Sum_probs=86.2
Q ss_pred HHHHHhhh--c-CCCc-EEEEecCCCCCChhh----HHHHHHHhcccCCCCccEEEEecCCCChHH---HHHHhhccccc
Q 008885 22 RVQSVNKS--A-GPFD-AVLCVGQFFPDSSEL----LDEFMNYVEGRSEIPIPTYFIGDYGVGAAK---VLLAASKNSAN 90 (550)
Q Consensus 22 kv~~l~~k--~-GpfD-~li~~GDff~~~~~~----~~~~~~~l~g~~~~p~ptyfv~GNhe~~~~---~l~~l~~~~~~ 90 (550)
.++++.+. + | .| ++|.+||++...... .+...+++ ..++.+. ++ ||||.... +.+.+..
T Consensus 110 ~v~~~r~~~~~~g-pd~Lll~~GD~~~gs~~~~~~~g~~~~~~l---n~lg~d~-~~-GNHEfd~G~~~l~~~l~~---- 179 (562)
T 2wdc_A 110 LIRDQKARVEAEG-GKALVLDGGDTWTNSGLSLLTRGEAVVRWQ---NLVGVDH-MV-SHWEWTLGRERVEELLGL---- 179 (562)
T ss_dssp HHHHHHHHHHHTT-CCEEEEECSCCSSSSHHHHHHTTHHHHHHH---HHHTCCE-EC-CSGGGGGCHHHHHHHHHH----
T ss_pred HHHHHHhhhhcCC-CCEEEEeCCCCCCcchhhhhhCCHHHHHHH---HhhCCcE-Ee-cchhcccCHHHHHHHHHh----
Confidence 34444443 3 4 36 899999997642210 11223333 3344554 47 99996421 2222221
Q ss_pred cCcccCCceecCcEEEcC-------CCCeEEEcCeEEEEEeCccCCC---CC----CCCCCC--HHHHHHHH-HhhcCCC
Q 008885 91 QGFKMDGFKVTDNLFWLK-------GSGNFTLHGLSVAYLSGRQSSE---GQ----QFGTYS--QDDVDALR-ALAEEPG 153 (550)
Q Consensus 91 ~~~~~~g~ei~~Nl~~Lg-------~~gv~~i~GlrIa~lgG~~~~~---~~----~~~~~t--e~di~~L~-~l~~~~~ 153 (550)
.+-..++.|+..-. ..-+++++|++|+.+|-..... .. ..+.|. .+.++.+. .+.....
T Consensus 180 ----~~~p~L~aNv~~~~~~~~~~~py~i~e~~G~kIgiiG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~ 255 (562)
T 2wdc_A 180 ----FRGEFLSYNIVDDLFGDPLFPAYRIHRVGPYALAVVGASYPYVKVSHPESFTEGLSFALDERRLQEAVDKARAEGA 255 (562)
T ss_dssp ----CCSEECCSSCEETTTCCBSSCSEEEEEETTEEEEEEEECCTTHHHHSCGGGGTTEECCCCHHHHHHHHHHHHHTTC
T ss_pred ----CCCCEEEEEEEecCCCCcccCCeEEEEECCeEEEEEeeccCcccccccccccCCcEEeCHHHHHHHHHHHHHHCCC
Confidence 11234566766431 1235578999999998653210 00 011222 23343322 2321122
Q ss_pred CccEEEeCCCCccccccccccccccccCCCCCCcHHHHHHHHH-hCCCEEEEccCCCccccccccCCCCcceeEEEEcCC
Q 008885 154 IVDLFLTNEWPSGVTNKAAASDMLVGISDSSNTDSTVSELVAE-IKPRYHIAGSKGVFYAREPYSNVDAVHVTRFLGLAP 232 (550)
Q Consensus 154 ~vDILLTh~wP~gi~~~~~~~~~~~~~~~~~~Gs~~i~~l~~~-lkPRYhf~Gh~~~f~er~Py~~~~~~~~TRFI~La~ 232 (550)
.+=|+|+|.... . + .+++++ -.....++||.|..+... .. ...|-.+..+.
T Consensus 256 d~iIvLsH~g~~-~----d------------------~~la~~~~giDlIlgGHtH~~~~~~-~~----~~~t~vvqag~ 307 (562)
T 2wdc_A 256 NAVVLLSHNGMQ-L----D------------------AALAERIRGIDLILSGHTHDLTPRP-WR----VGKTWIVAGSA 307 (562)
T ss_dssp SEEEEEECSCHH-H----H------------------HHHHTTSSSCCEEEECSSCCCCSSC-EE----ETTEEEEECCS
T ss_pred CEEEEEeCCCCc-c----h------------------HHHHhcCCCCcEEEeCCCCCCCccC-EE----ECCEEEEecCc
Confidence 344788885422 1 0 123333 246799999998766421 11 13577788888
Q ss_pred CCC
Q 008885 233 VGN 235 (550)
Q Consensus 233 ~g~ 235 (550)
+|.
T Consensus 308 ~g~ 310 (562)
T 2wdc_A 308 AGK 310 (562)
T ss_dssp TTC
T ss_pred ccc
Confidence 775
No 73
>3c9f_A 5'-nucleotidase; 2',3'-cyclic phosphodiesterase, protein STR initiative, PSI-2, NEW YORK SGX research center for structu genomics, nysgxrc; 1.90A {Candida albicans} SCOP: d.114.1.1 d.159.1.2
Probab=97.07 E-value=0.038 Score=60.59 Aligned_cols=205 Identities=9% Similarity=-0.072 Sum_probs=105.6
Q ss_pred CCEEEEEcCCCCChH----------------HHHHHHHHHhhhcCCCc-EEEEecCCCCCChhh------HHHHHHHhcc
Q 008885 3 PPRILLCGDVLGRLN----------------QLFKRVQSVNKSAGPFD-AVLCVGQFFPDSSEL------LDEFMNYVEG 59 (550)
Q Consensus 3 ~~KILv~GDvhG~~~----------------~l~~kv~~l~~k~GpfD-~li~~GDff~~~~~~------~~~~~~~l~g 59 (550)
.++||.++|+||++. .+...++++.++.++ | ++|-+||++....-. -+...+.+
T Consensus 15 ~l~ILhtnD~Hg~~~~~~~~~~~~~~~Gg~a~l~~~i~~~~~~~~~-~~LlldaGD~~~Gs~~~~~~~~~g~~~~~~l-- 91 (557)
T 3c9f_A 15 DINFVHTTDTHGWYSGHINQPLYHANWGDFISFTTHMRRIAHSRNQ-DLLLIDSGDRHDGNGLSDITSPNGLKSTPIF-- 91 (557)
T ss_dssp SEEEEEECCCTTCTTCCSSCGGGCCCHHHHHHHHHHHHHHHHHTTC-EEEEEECSCCCSSCHHHHSSSSTTTTTHHHH--
T ss_pred EEEEEEEcccccCccCcccccccccccchHHHHHHHHHHHHHhcCC-CEEEEecCCCCCCccchhhcccCCHHHHHHH--
Confidence 478999999999753 333444443323444 5 679999997532100 00122333
Q ss_pred cCCCCccEEEEecCCCChHH------HHHHhhccccccCcccCCceecCcEEEcC----------CCCeEEE--cCeEEE
Q 008885 60 RSEIPIPTYFIGDYGVGAAK------VLLAASKNSANQGFKMDGFKVTDNLFWLK----------GSGNFTL--HGLSVA 121 (550)
Q Consensus 60 ~~~~p~ptyfv~GNhe~~~~------~l~~l~~~~~~~~~~~~g~ei~~Nl~~Lg----------~~gv~~i--~GlrIa 121 (550)
..+++. +++.||||.... +.+.+.. .+...++.|+.+.. ...++++ +|+||+
T Consensus 92 -n~lg~D-a~tlGNHEfD~G~~~l~~~~~~l~~--------a~fp~L~ANv~~~~~~g~~~~~~~py~I~e~~~~G~kIg 161 (557)
T 3c9f_A 92 -IKQDYD-LLTIGNHELYLWENSKQEYETVVNH--------FQDKYVCSNVDIRLDNGLFVPLGLKYKYFTTPIRGIRVM 161 (557)
T ss_dssp -TTSCCS-EECCCGGGSSSHHHHHHHHHHHHHH--------TTTTBBCSSEEEECTTSCEEESSBSCEEEECTTTCCEEE
T ss_pred -HhcCCC-EEeecchhcccchHHHHHHHHHHHh--------CCCCEEEeecccccccCCccccCCCeEEEEEccCCEEEE
Confidence 344444 667799997532 2222221 12235677877532 2345677 899999
Q ss_pred EEeCccCCCCC-CCCCC-CHHH-HH--HHHHhhcCCCCcc--EEEeCCCCccccccccccccccccCCCCCCcHHHHHHH
Q 008885 122 YLSGRQSSEGQ-QFGTY-SQDD-VD--ALRALAEEPGIVD--LFLTNEWPSGVTNKAAASDMLVGISDSSNTDSTVSELV 194 (550)
Q Consensus 122 ~lgG~~~~~~~-~~~~~-te~d-i~--~L~~l~~~~~~vD--ILLTh~wP~gi~~~~~~~~~~~~~~~~~~Gs~~i~~l~ 194 (550)
.+|=....... ....| ...+ +. .+.++. ..++| |+|+|..-.+-. + .. ......++
T Consensus 162 iiGlt~~~~~~~~~~~~~d~~e~i~~~~v~~l~--~~~~D~IIvL~H~G~~~~~---d-----------~~-~~~~~~lA 224 (557)
T 3c9f_A 162 AFGFLFDFKRFNSGTRVTPMAETIHEPWFQEAL--KHEVDLIIIVGHTPISHNW---G-----------EF-YQVHQYLR 224 (557)
T ss_dssp EEECCCCCCCCCTTEEECCHHHHTTSHHHHHHT--TSCCSEEEEECSSCCCTTT---C-----------HH-HHHHHHHH
T ss_pred EEEeecCCCCCCCCcEECCHHHHHHHHHHHHHH--hcCCCEEEEecccCccccC---c-----------cc-cHHHHHHH
Confidence 99865431111 01122 2222 12 233322 23566 567774321110 0 01 22334455
Q ss_pred HHhCCC---EEEEccCCCccccccccCCCCcceeEEEEcCCCCCcccceeEEEeccCC
Q 008885 195 AEIKPR---YHIAGSKGVFYAREPYSNVDAVHVTRFLGLAPVGNKEKQKFIHALSPTP 249 (550)
Q Consensus 195 ~~lkPR---Yhf~Gh~~~f~er~Py~~~~~~~~TRFI~La~~g~~~K~Kw~yAf~i~p 249 (550)
+.+ |- ..+.||.|.... .+|. ..|-.+..|.++. ++--++|+-
T Consensus 225 ~~~-~giDilIlgGHtH~~~~-~~~~-----~~t~ivqaG~~g~-----~lG~l~l~~ 270 (557)
T 3c9f_A 225 QFF-PDTIIQYFGGHSHIRDF-TVFD-----SLSTGLQSGRYCE-----TVGWTSVNL 270 (557)
T ss_dssp HHC-TTSEEEEEECSSCCEEE-EEEE-----TTEEEEEECSTTS-----EEEEEEECC
T ss_pred HhC-CCCCEEEECCCCCCCCc-ceec-----CCeEeeeccchhc-----EEEEEEEEE
Confidence 544 43 478999987643 3342 2466677777764 555555553
No 74
>4h2g_A 5'-nucleotidase; dimer, hydrolase, phosphatase, extracellular; HET: ADN; 1.55A {Homo sapiens} PDB: 4h2f_A* 4h1y_P* 4h2i_A* 4h1s_A* 4h2b_A*
Probab=96.82 E-value=0.0044 Score=67.83 Aligned_cols=114 Identities=14% Similarity=0.062 Sum_probs=67.9
Q ss_pred CCEEEEEcCCCCCh--------------------HHHHHHHHHHhhhcCCCcEEEEecCCCCCChhh----HHHHHHHhc
Q 008885 3 PPRILLCGDVLGRL--------------------NQLFKRVQSVNKSAGPFDAVLCVGQFFPDSSEL----LDEFMNYVE 58 (550)
Q Consensus 3 ~~KILv~GDvhG~~--------------------~~l~~kv~~l~~k~GpfD~li~~GDff~~~~~~----~~~~~~~l~ 58 (550)
+++||.++|+||++ .++...++++.+++ |-+++|.+||++...... ...+.+.+
T Consensus 25 ~l~Il~~nD~Hg~~~~~~~~~~~~~~~~~~~gG~a~l~~~i~~~r~~~-~~~l~l~~GD~~~g~~~~~~~~g~~~~~~l- 102 (546)
T 4h2g_A 25 ELTILHTNDVHSRLEQTSEDSSKCVDASRCMGGVARLFTKVQQIRRAE-PNVLLLDAGDQYQGTIWFTVYKGAEVAHFM- 102 (546)
T ss_dssp EEEEEEECCCTTCCSCBCTTSSBCSSGGGCBCCHHHHHHHHHHHHHHC-SSEEEEECSCCSSSSHHHHHHTTHHHHHHH-
T ss_pred EEEEEEecccccCCcccccccccccccccccCCHHHHHHHHHHHHhhC-CCEEEEECCccCCCchhhhhhCChHHHHHH-
Confidence 36899999999864 45566666666555 458999999997643210 01222333
Q ss_pred ccCCCCccEEEEecCCCChHHHHHHhh-ccccccCcccCCceecCcEEEcC-----------CCCeEEEcCeEEEEEeCc
Q 008885 59 GRSEIPIPTYFIGDYGVGAAKVLLAAS-KNSANQGFKMDGFKVTDNLFWLK-----------GSGNFTLHGLSVAYLSGR 126 (550)
Q Consensus 59 g~~~~p~ptyfv~GNhe~~~~~l~~l~-~~~~~~~~~~~g~ei~~Nl~~Lg-----------~~gv~~i~GlrIa~lgG~ 126 (550)
..+.+. +++.||||.... .+.+. .... ..+-..++.|+...+ ..-+++.+|+||+.+|=.
T Consensus 103 --n~lg~d-~~~~GNHEfd~g-~~~l~~~~~~----~~~~~~l~aNv~~~~~~~p~~~~~~~~~~i~~~~G~kIgiiG~~ 174 (546)
T 4h2g_A 103 --NALRYD-AMALGNHEFDNG-VEGLIEPLLK----EAKFPILSANIKAKGPLASQISGLYLPYKVLPVGDEVVGIVGYT 174 (546)
T ss_dssp --HHHTCS-EEECCGGGGTTH-HHHHHTTTTT----TCSSCEECSSEEECHHHHHHHBTTBBSEEEEEETTEEEEEEEEE
T ss_pred --HhcCCc-EEeccCcccccC-HHHHHHHHHh----hcCCCEEEEEeecCCCCCccccccCCCeEEEEECCEEEEEEEec
Confidence 223333 788999985432 12221 1000 012246788887543 234557899999999854
No 75
>1t71_A Phosphatase, conserved HYPO; crystal, X-RAY crystallography, structural GENO berkeley structural genomics center, BSGC, PSI; 2.10A {Mycoplasma pneumoniae M129} SCOP: d.159.1.9
Probab=96.04 E-value=0.0051 Score=61.61 Aligned_cols=73 Identities=16% Similarity=0.195 Sum_probs=43.2
Q ss_pred CCCCEEEEEcCCCCCh--HHHHHHHHHHhhhcCCCcEEEEecCCCCCC-hhhHHHHHHHhcccCCCCccEEEEecCCCCh
Q 008885 1 MSPPRILLCGDVLGRL--NQLFKRVQSVNKSAGPFDAVLCVGQFFPDS-SELLDEFMNYVEGRSEIPIPTYFIGDYGVGA 77 (550)
Q Consensus 1 M~~~KILv~GDvhG~~--~~l~~kv~~l~~k~GpfD~li~~GDff~~~-~~~~~~~~~~l~g~~~~p~ptyfv~GNhe~~ 77 (550)
|.+||||++||+||+- ..+...+.++.++.. .|++|+-||-+... .-.......+ ..+++- ..+.|||+-+
T Consensus 2 ~~~m~ilf~GDv~G~~G~~~l~~~l~~lr~~~~-~d~vi~Ngen~~gG~g~~~~~~~~l----n~~G~D-a~TlGNHefD 75 (281)
T 1t71_A 2 MNSIKFIFLGDVYGKAGRNIIKNNLAQLKSKYQ-ADLVIVNAENTTHGKGLSLKHYEFL----KEAGVN-YITMGNHTWF 75 (281)
T ss_dssp CCCCEEEEECEEBHHHHHHHHHTTHHHHHHHHT-CSEEEEECTBTTTTSSCCHHHHHHH----HHHTCC-EEECCTTTTC
T ss_pred cceEEEEEECCcCChHHHHHHHHHHHHHHHhcC-CCEEEEcCCCCCCCCCcCHHHHHHH----HhcCCC-EEEEccCccc
Confidence 6689999999999974 344555666655543 58999998863211 1011122222 222233 3456899976
Q ss_pred HH
Q 008885 78 AK 79 (550)
Q Consensus 78 ~~ 79 (550)
..
T Consensus 76 ~g 77 (281)
T 1t71_A 76 QK 77 (281)
T ss_dssp CG
T ss_pred CC
Confidence 43
No 76
>3jyf_A 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'- nucleotidase bifunctional periplasmic...; APC63187.2; HET: EPE TAM; 2.43A {Klebsiella pneumoniae subsp}
Probab=95.74 E-value=0.073 Score=54.60 Aligned_cols=112 Identities=10% Similarity=-0.070 Sum_probs=63.9
Q ss_pred CCEEEEEcCCCCChH----------------HHHHHHHHHhhhcCCCcEEEEecCCCCCChhhH------------HHHH
Q 008885 3 PPRILLCGDVLGRLN----------------QLFKRVQSVNKSAGPFDAVLCVGQFFPDSSELL------------DEFM 54 (550)
Q Consensus 3 ~~KILv~GDvhG~~~----------------~l~~kv~~l~~k~GpfD~li~~GDff~~~~~~~------------~~~~ 54 (550)
+++||.+.|+||++. ++...++++.++. +-.++|-+||++....-.. ....
T Consensus 8 ~l~Il~tnD~Hg~~~~~~~~~~~~~~~gG~ar~at~i~~~r~~~-~n~llld~GD~~qGs~~~~~~~~~~~~~g~~~p~~ 86 (339)
T 3jyf_A 8 DLRIMETTDLHSNMMDFDYYKDAATEKFGLVRTASLIEQARAEV-KNSVLVDNGDVIQGSPLGDYMAAKGLKEGDVHPVY 86 (339)
T ss_dssp EEEEEEECCCTTCCSSEETTTTEECSSCCHHHHHHHHHHHHHTC-SCEEEEECSCCSSSSHHHHHHHHHCCCTTCCCHHH
T ss_pred eEEEEEEeeCCCCcccccccCCCccccCCHHHHHHHHHHHHhhC-CCEEEEECCCCCCCchhHHhhhhcccccccchHHH
Confidence 478999999999863 3444455554444 4468899999975321100 0112
Q ss_pred HHhcccCCCCccEEEEecCCCChH--HHH-HHhhccccccCcccCCceecCcEEEc-------CCCCeEEE-----c---
Q 008885 55 NYVEGRSEIPIPTYFIGDYGVGAA--KVL-LAASKNSANQGFKMDGFKVTDNLFWL-------KGSGNFTL-----H--- 116 (550)
Q Consensus 55 ~~l~g~~~~p~ptyfv~GNhe~~~--~~l-~~l~~~~~~~~~~~~g~ei~~Nl~~L-------g~~gv~~i-----~--- 116 (550)
+.+ ..+++- +++.||||... +.+ +.+.. .+-..++.|++.- ....|++. +
T Consensus 87 ~~m---n~lg~D-~~t~GNHEfd~G~~~l~~~~~~--------a~fp~l~aNv~~~~~g~~~~~py~I~~~~v~~~~G~~ 154 (339)
T 3jyf_A 87 KAM---NTLNYA-VGNLGNHEFNYGLDFLHKALAG--------AKFPYVNANIIDAKTGKPMFTPYLIQDTRVVDSDGQI 154 (339)
T ss_dssp HHH---TTSCCS-EEECCGGGGTTCHHHHHHHHHT--------CSSCEECSSEEETTTSSBSSCCEEEEEEEEECTTSCE
T ss_pred HHH---HhcCCC-EEecchhhhhccHHHHHHHHHh--------cCCceeeeeeeecCCCCcccCCeEEEEEEeeccCCCc
Confidence 222 334433 56789999542 223 32321 1234688888762 12234444 4
Q ss_pred -CeEEEEEeCcc
Q 008885 117 -GLSVAYLSGRQ 127 (550)
Q Consensus 117 -GlrIa~lgG~~ 127 (550)
|+||+.+|=..
T Consensus 155 ~gvkIgviG~~~ 166 (339)
T 3jyf_A 155 HTLRIGYIGFVP 166 (339)
T ss_dssp EEEEEEEEEECC
T ss_pred CCeEEEEEeccc
Confidence 69999999753
No 77
>3gve_A YFKN protein; alpha-beta-BETA-alpha sandwich, structural genomics, PSI-2, structure initiative; HET: CIT; 1.25A {Bacillus subtilis subsp}
Probab=95.73 E-value=0.042 Score=56.45 Aligned_cols=112 Identities=11% Similarity=-0.020 Sum_probs=63.3
Q ss_pred CCEEEEEcCCCCChH----------------HHHHHHHHHhhhcCCCcEEEEecCCCCCChh----hH------------
Q 008885 3 PPRILLCGDVLGRLN----------------QLFKRVQSVNKSAGPFDAVLCVGQFFPDSSE----LL------------ 50 (550)
Q Consensus 3 ~~KILv~GDvhG~~~----------------~l~~kv~~l~~k~GpfD~li~~GDff~~~~~----~~------------ 50 (550)
+++||.++|+||++. ++...++++.+++ +-.++|-+||++....- ..
T Consensus 11 ~l~Il~tnD~Hg~~~~~~~~~~~~~~~gG~ar~at~i~~~r~~~-~~~llld~GD~~qGs~~~~~~~~~~~~~g~~~g~~ 89 (341)
T 3gve_A 11 HLSILATTDIHANMMDYDYYSDKETADFGLARTAQLIQKHREQN-PNTLLVDNGDLIQGNPLGEYAVKYQKDDIISGTKT 89 (341)
T ss_dssp EEEEEEECCCTTCCSSEETTTTEECSSCCHHHHHHHHHHHHHHC-SSEEEEECSCCSCSSHHHHHHHHHHHHHHHHTSSC
T ss_pred EEEEEEEeccCCCccCccccCCCccccCCHHHHHHHHHHHHhcC-CCEEEEecCccCCCcHHHHHhhhcccccccccccc
Confidence 368999999999863 4444555555444 44688899999753211 00
Q ss_pred HHHHHHhcccCCCCccEEEEecCCCChH--HHH-HHhhccccccCcccCCceecCcEEE------cCCCCeEEE-----c
Q 008885 51 DEFMNYVEGRSEIPIPTYFIGDYGVGAA--KVL-LAASKNSANQGFKMDGFKVTDNLFW------LKGSGNFTL-----H 116 (550)
Q Consensus 51 ~~~~~~l~g~~~~p~ptyfv~GNhe~~~--~~l-~~l~~~~~~~~~~~~g~ei~~Nl~~------Lg~~gv~~i-----~ 116 (550)
....+.+ ..+++- +++.||||... +.+ +.+.. ..-..++.|++. +....|++. +
T Consensus 90 ~~~~~~l---n~lg~D-a~tlGNHEfd~G~~~L~~~~~~--------~~fp~l~aNv~~~~g~~~~~py~I~~~~~~~~~ 157 (341)
T 3gve_A 90 HPIISVM---NALKYD-AGTLGNHEFNYGLDFLDGTIKG--------ADFPIVNANVKTTSGENRYTPYVINEKTLIDEN 157 (341)
T ss_dssp CHHHHHH---HHTTCC-BEECCGGGGTTCHHHHHHHHHT--------CSSCEECSSEECTTSCBSSCCEEEEEEEEECTT
T ss_pred cHHHHHH---HhhCCC-eeeccchhhccCHHHHHHHHHh--------cCCCEEEEeeECCCCCCccCCeEEEEEeeeccC
Confidence 0112222 223333 56789999542 223 32321 123467888864 222234454 3
Q ss_pred ----CeEEEEEeCcc
Q 008885 117 ----GLSVAYLSGRQ 127 (550)
Q Consensus 117 ----GlrIa~lgG~~ 127 (550)
|+||+.+|=..
T Consensus 158 G~~~gvkIgviG~t~ 172 (341)
T 3gve_A 158 GNEQKVKVGYIGFVP 172 (341)
T ss_dssp SCEEEEEEEEEEECC
T ss_pred CCcCCeEEEEEEecc
Confidence 69999999653
No 78
>4h1s_A 5'-nucleotidase; hydrolase; HET: NAG; 2.20A {Homo sapiens}
Probab=95.06 E-value=0.1 Score=56.67 Aligned_cols=113 Identities=15% Similarity=0.102 Sum_probs=66.4
Q ss_pred CCEEEEEcCCCCChH--------------------HHHHHHHHHhhhcCCCcEEEEecCCCCCChhh----HHHHHHHhc
Q 008885 3 PPRILLCGDVLGRLN--------------------QLFKRVQSVNKSAGPFDAVLCVGQFFPDSSEL----LDEFMNYVE 58 (550)
Q Consensus 3 ~~KILv~GDvhG~~~--------------------~l~~kv~~l~~k~GpfD~li~~GDff~~~~~~----~~~~~~~l~ 58 (550)
++.||.+.|+||+|. ++...++++.+++ |--++|-+||++....-. -+..-++++
T Consensus 3 ~LtILhtnD~Hg~l~~~~~~~~~~~~~~~~~GG~arlat~i~~~r~~~-~n~llldaGD~~qGs~~~~~~~g~~~i~~mN 81 (530)
T 4h1s_A 3 ELTILHTNDVHSRLEQTSEDSSKCVNASRCMGGVARLFTKVQQIRRAE-PNVLLLDAGDQYQGTIWFTVYKGAEVAHFMN 81 (530)
T ss_dssp EEEEEEECCCTTCCSCBCTTSSBCCSTTSCBCCHHHHHHHHHHHHHHC-SSEEEEECSCCSCSSHHHHHHTTHHHHHHHH
T ss_pred EEEEEEEcccccCCcccCcccccccccccccCcHHHHHHHHHHHHhhC-cCeEEEEeCCcccchHHHHHhCChHHHHHHh
Confidence 368999999998763 4555566555544 445788899997642110 001112221
Q ss_pred ccCCCCccEEEEecCCCChHH---HHHHhhccccccCcccCCceecCcEEEcC-----------CCCeEEEcCeEEEEEe
Q 008885 59 GRSEIPIPTYFIGDYGVGAAK---VLLAASKNSANQGFKMDGFKVTDNLFWLK-----------GSGNFTLHGLSVAYLS 124 (550)
Q Consensus 59 g~~~~p~ptyfv~GNhe~~~~---~l~~l~~~~~~~~~~~~g~ei~~Nl~~Lg-----------~~gv~~i~GlrIa~lg 124 (550)
.+++ -+.+.||||.... +++.+... .....|+.|++.-+ ..-|++.+|+||+.+|
T Consensus 82 ---~lgy-Da~~lGNHEFd~G~~~l~~~~~~~-------a~fp~L~aNv~~~~~~~~~~~~~~~py~I~~~~g~kIgviG 150 (530)
T 4h1s_A 82 ---ALRY-DAMALGNHEFDNGVEGLIEPLLKE-------AKFPILSANIKAKGPLASQISGLYLPYKVLPVGDEVVGIVG 150 (530)
T ss_dssp ---HTTC-CEEECCGGGGTTTTHHHHTTTTTT-------CSSCEECTTEEECTTHHHHHTTTSBSEEEEEETTEEEEEEE
T ss_pred ---ccCC-CEEEEchhhhccCHHHHHHHHHhh-------CCCCEEEEeeeccCCcccccCCcccceEEEEeccEEEeecc
Confidence 2222 3678899986432 22222111 12347899997643 1245678999999999
Q ss_pred Ccc
Q 008885 125 GRQ 127 (550)
Q Consensus 125 G~~ 127 (550)
-..
T Consensus 151 ltt 153 (530)
T 4h1s_A 151 YTS 153 (530)
T ss_dssp EEC
T ss_pred ccc
Confidence 653
No 79
>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A
Probab=94.43 E-value=0.016 Score=46.11 Aligned_cols=56 Identities=30% Similarity=0.746 Sum_probs=22.1
Q ss_pred cceeeeccCCCCCCCcccccCCchhhhh------hccccchhhhcccccCCCCCccccCCcC
Q 008885 315 MCFKFIYSGSCPRGEKCNFRHDTDAREQ------CLRGVCLDFIIKGKCEKGPECSYKHSLQ 370 (550)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 370 (550)
+|..|...|.|+.|+.|+|.|+...... +-...|..|.+.|.|..|.+|++.|..+
T Consensus 14 ~C~~f~~~G~C~~G~~C~f~H~~~e~~~~~~~~~~k~~~C~~f~~~G~C~~G~~C~f~H~~~ 75 (77)
T 1m9o_A 14 LCRTYSESGRCRYGAKCQFAHGLGELRQANRHPKYKTELCHKFKLQGRCPYGSRCHFIHNPT 75 (77)
T ss_dssp CCSGGGGTSCCTTTTTCSSCSSSCCGGGTC--------------------------------
T ss_pred hCHHhhhCCCcCCCCCccCCCCChhhccccccccccCCcccchhhCcCCCCcCcCCCCCCCC
Confidence 6777777889999999999999754332 2356898899999999999999998764
No 80
>2z06_A Putative uncharacterized protein TTHA0625; metal binding protein, structural genomics, NPPSFA; 2.20A {Thermus thermophilus} SCOP: d.159.1.10 PDB: 2cv9_A
Probab=93.47 E-value=0.21 Score=48.96 Aligned_cols=105 Identities=17% Similarity=0.167 Sum_probs=55.6
Q ss_pred CEEEEEcCCCCC--hHHHHHHHHHHhhhcCCCcEEEEecC-CC-CCChhhHHHHHHHhcccCCCCccEEEEecCCCChHH
Q 008885 4 PRILLCGDVLGR--LNQLFKRVQSVNKSAGPFDAVLCVGQ-FF-PDSSELLDEFMNYVEGRSEIPIPTYFIGDYGVGAAK 79 (550)
Q Consensus 4 ~KILv~GDvhG~--~~~l~~kv~~l~~k~GpfD~li~~GD-ff-~~~~~~~~~~~~~l~g~~~~p~ptyfv~GNhe~~~~ 79 (550)
||||++||+=|+ ...+.+.+.++.+++ |++|+-|. .+ +.... ......+ .++++-. ++.|||+-+..
T Consensus 1 m~ilfiGDi~g~~G~~~v~~~l~~lr~~~---d~vi~ngen~~~G~g~~-~~~~~~l----~~~G~D~-~T~GNHefD~~ 71 (252)
T 2z06_A 1 MRVLFIGDVMAEPGLRAVGLHLPDIRDRY---DLVIANGENAARGKGLD-RRSYRLL----REAGVDL-VSLGNHAWDHK 71 (252)
T ss_dssp CEEEEECCBCHHHHHHHHHHHHHHHGGGC---SEEEEECTTTTTTSSCC-HHHHHHH----HHHTCCE-EECCTTTTSCT
T ss_pred CEEEEEEecCCcccHHHHHHHHHHHHhhC---CEEEEeCCCccCCCCcC-HHHHHHH----HhCCCCE-EEeccEeeECc
Confidence 799999999886 455666677766554 77777655 43 22111 1223333 2333444 46799996643
Q ss_pred -HHHHhhcc--ccccCcccCCceecCcEEEcCCCCeEEEcCeEEEEEeC
Q 008885 80 -VLLAASKN--SANQGFKMDGFKVTDNLFWLKGSGNFTLHGLSVAYLSG 125 (550)
Q Consensus 80 -~l~~l~~~--~~~~~~~~~g~ei~~Nl~~Lg~~gv~~i~GlrIa~lgG 125 (550)
++..+... -...+++. + .+ ..+..|++.+|.+|+.+|-
T Consensus 72 ~l~~~l~~~~~vrpaN~~~-~---~p----g~~~~i~~~~G~kIgVi~l 112 (252)
T 2z06_A 72 EVYALLESEPVVRPLNYPP-G---TP----GKGFWRLEVGGESLLFVQV 112 (252)
T ss_dssp THHHHHHHSSEECCTTSCS-S---CS----SCSEEEEEETTEEEEEEEE
T ss_pred hHHHHhccCCceEeecCCC-C---CC----CCCeEEEEECCEEEEEEEc
Confidence 33323210 00001111 0 11 1123466789999998874
No 81
>1t70_A Phosphatase; crystal, X-RAY crystallography, structural GENO berkeley structural genomics center, BSGC, PSI, protein STR initiative; 2.30A {Deinococcus radiodurans} SCOP: d.159.1.9
Probab=93.14 E-value=0.15 Score=50.16 Aligned_cols=106 Identities=15% Similarity=0.076 Sum_probs=55.3
Q ss_pred CEEEEEcCCCCCh--HHHHHHHHHHhhhcCCCcEEEEecCCC-CC-ChhhHHHHHHHhcccCCCCccEEEEecCCCChHH
Q 008885 4 PRILLCGDVLGRL--NQLFKRVQSVNKSAGPFDAVLCVGQFF-PD-SSELLDEFMNYVEGRSEIPIPTYFIGDYGVGAAK 79 (550)
Q Consensus 4 ~KILv~GDvhG~~--~~l~~kv~~l~~k~GpfD~li~~GDff-~~-~~~~~~~~~~~l~g~~~~p~ptyfv~GNhe~~~~ 79 (550)
||||++||+=|+. ..+.+.+.++.++. |++|+-|+-. .. ... ......+ ..+++- .++.|||+-+..
T Consensus 1 m~ilf~GDv~g~~G~~~~~~~l~~lr~~~---d~vi~nge~~~~G~g~~-~~~~~~l----~~~G~D-a~TlGNHefD~~ 71 (255)
T 1t70_A 1 MRVLFIGDVFGQPGRRVLQNHLPTIRPQF---DFVIVNMENSAGGFGMH-RDAARGA----LEAGAG-CLTLGNHAWHHK 71 (255)
T ss_dssp CEEEEECCBBHHHHHHHHHHHHHHHGGGC---SEEEEECTBTTTTSSCC-HHHHHHH----HHHTCS-EEECCTTTTSST
T ss_pred CEEEEEeccCChHHHHHHHHHHHHHHhhC---CEEEECCCCccCCcCCC-HHHHHHH----HhCCCC-EEEeccccccCc
Confidence 7999999998864 34445555555444 8888887753 21 111 1222222 223333 345589997643
Q ss_pred -HHHHhhccccccCcccCCceecCcEE---EcCC-CCeEEEcCeEEEEEeC
Q 008885 80 -VLLAASKNSANQGFKMDGFKVTDNLF---WLKG-SGNFTLHGLSVAYLSG 125 (550)
Q Consensus 80 -~l~~l~~~~~~~~~~~~g~ei~~Nl~---~Lg~-~gv~~i~GlrIa~lgG 125 (550)
+++.+.... | -.-.+-|+- ..++ ..|++.+|++|+.+|-
T Consensus 72 ~l~~~l~~~~----~---~~~~~aN~~~~~~pg~g~~I~~~~G~kIgVigl 115 (255)
T 1t70_A 72 DIYPMLSEDT----Y---PIVRPLNYADPGTPGVGWRTFDVNGEKLTVVNL 115 (255)
T ss_dssp THHHHHHTTC----S---CEECCSCCCCTTCSSCSEEEEECSSSEEEEEEE
T ss_pred hHHHHHhhCC----C---cEEEEeccCCCCCCCCCeEEEEECCEEEEEEEe
Confidence 333332110 0 001123321 1122 2355778999998874
No 82
>3bl9_A Scavenger mRNA-decapping enzyme DCPS; ligand complex, cytoplasm, hydrolase, nonsense-mediated mRNA decay, nucleus, polymorphism, structural genomics; HET: DD2; 1.80A {Homo sapiens} SCOP: d.13.1.3 d.246.1.1 PDB: 3bl7_A* 3bla_A*
Probab=91.50 E-value=0.59 Score=46.80 Aligned_cols=85 Identities=13% Similarity=0.093 Sum_probs=55.9
Q ss_pred cceEEEECCE---EEEEecC-----CCCCCCeEEEEeccc-cCCCCCCCHHHHHHHHHHHHHHHHHHhh-cCC---c-eE
Q 008885 402 SHLIVSVGEY---YYCALPK-----GPLVEDHVLVIPVEH-VPNTISTSPECEKELGRFQNSLMMYYKN-QGK---E-AV 467 (550)
Q Consensus 402 ~hliis~g~~---~yl~l~k-----gpl~~gH~lIiP~~H-~~s~~~l~~~~~~Ei~~~~~~L~~~~~~-~~~---~-~v 467 (550)
...|++.+++ -||++|. .|+..=|+|+||.+| +.|+.+|..+-..=+++++....+...+ +|. . .+
T Consensus 150 ~e~ilyeD~d~~~gFvllpDlkWd~~~~~~lhlLaI~~~~~I~SlrdL~~~HlpLL~~M~~~~~~~i~~~y~~~~~~~rl 229 (301)
T 3bl9_A 150 ADRIVFENPDPSDGFVLIPDLKWNQQQLDDLYLIAICHRRGIRSLRDLTPEHLPLLRNILHQGQEAILQRYRMKGDHLRV 229 (301)
T ss_dssp GGGCCEEECCTTTCEEEEECTTCCSSCSTTCEEEEEESSSCCCSGGGCCGGGHHHHHHHHHHHHHHHHHHHCCCGGGEEE
T ss_pred cccEEEecCCCCcCEEEeccCccCCCcccccEEEEEecccCCCChHHCCHhHHHHHHHHHHHHHHHHHHhcCCChHHeEE
Confidence 3345665554 2777773 389999999999998 9999999887655555555555555443 231 2 23
Q ss_pred EEeecCCCcCeEEEEEeecC
Q 008885 468 FFEWLSKRGTHANLQAVPIP 487 (550)
Q Consensus 468 ~~E~~~~~~~H~hi~~vPvp 487 (550)
+|-+. -...|+|+|+|-+-
T Consensus 230 gfHy~-PS~yHLHlHvis~~ 248 (301)
T 3bl9_A 230 YLHYL-PSYYHLHVHFTALG 248 (301)
T ss_dssp EEESS-CSSSSCEEEEEETT
T ss_pred EecCC-CCcceEEEEEEecC
Confidence 34422 24579999999875
No 83
>1vlr_A MRNA decapping enzyme; 16740816, structural genomics, JCSG, protein structure initiative, PSI, joint center for structural genomics; 1.83A {Mus musculus} SCOP: d.13.1.3 d.246.1.1 PDB: 1xmm_B* 1xml_B 1st0_B* 1st4_B*
Probab=90.59 E-value=0.65 Score=47.23 Aligned_cols=83 Identities=13% Similarity=0.085 Sum_probs=54.8
Q ss_pred eEEEECCE---EEEEecC-----CCCCCCeEEEEeccc-cCCCCCCCHHHHHHHHHHHHHHHHHHhh-cCC---c-eEEE
Q 008885 404 LIVSVGEY---YYCALPK-----GPLVEDHVLVIPVEH-VPNTISTSPECEKELGRFQNSLMMYYKN-QGK---E-AVFF 469 (550)
Q Consensus 404 liis~g~~---~yl~l~k-----gpl~~gH~lIiP~~H-~~s~~~l~~~~~~Ei~~~~~~L~~~~~~-~~~---~-~v~~ 469 (550)
.|++.+++ =||++|. .|+..=|+|+||.+| +.|+.+|..+-..=|.+++....++... +|. . .++|
T Consensus 199 ~vlyeD~d~~~gFvllpDlKWd~~~~~~lhlLaI~~~~dI~SlRdL~~~HlpLL~~M~~~~~~ii~~~yg~~~~~lRlgf 278 (350)
T 1vlr_A 199 RIVFENPDPSDGFVLIPDLKWNQQQLDDLYLIAICHRRGIRSLRDLTPEHLPLLRNILREGQEAILKRYQVTGDRLRVYL 278 (350)
T ss_dssp CCSEEECCTTTCEEEEECTTCCSSCSTTCEEEEEESSSCCCSGGGCCGGGHHHHHHHHHHHHHHHHHHHCCCGGGEEEEE
T ss_pred cEEEecCCCCCCeEEeccCccCCCccccceEEEEecccCCCChHHCCHhHHHHHHHHHHHHHHHHHHhcCCChHHeEEEe
Confidence 45555544 2777773 389999999999998 9999999887555555555555555443 231 2 2344
Q ss_pred eecCCCcCeEEEEEeecC
Q 008885 470 EWLSKRGTHANLQAVPIP 487 (550)
Q Consensus 470 E~~~~~~~H~hi~~vPvp 487 (550)
=+. -...|+|+|+|-+-
T Consensus 279 Hy~-PS~yHLHlHvis~~ 295 (350)
T 1vlr_A 279 HYL-PSYYHLHVHFTALG 295 (350)
T ss_dssp ESS-CSSSSCEEEEEETT
T ss_pred cCC-CCcceEEEEEEecc
Confidence 422 24579999999875
No 84
>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A
Probab=88.30 E-value=0.24 Score=38.63 Aligned_cols=53 Identities=36% Similarity=0.921 Sum_probs=40.3
Q ss_pred cceeeeccCCCCCCC-cccccCCchh----hhhhccccchhhhcccccCCCCCccccCCcC
Q 008885 315 MCFKFIYSGSCPRGE-KCNFRHDTDA----REQCLRGVCLDFIIKGKCEKGPECSYKHSLQ 370 (550)
Q Consensus 315 ~~~~~~~~~~~~~~~-~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 370 (550)
+|..| ..|.|.+|+ .|+|.|.... .......+|.+|.. |.|..| +|++.|..+
T Consensus 8 vC~~f-~~G~C~rg~~~C~f~H~~~~~~~~~~~~~~~vC~~flk-G~C~r~-~C~y~H~~~ 65 (70)
T 3d2q_A 8 VCREY-QRGNCNRGENDCRFAHPADSTMIDTNDNTVTVCMDYIK-GRCSRE-KCKYFHPPA 65 (70)
T ss_dssp BCHHH-HTTCCSSCTTTCSSBCCCTTSCCBTTTTEEEBCHHHHT-TCCCCT-TCCSBCCCH
T ss_pred hCHHH-hcCCCCCCCCCCCCccCcccccccccCCcceeccccCc-CCCCCC-CcCeeCCHH
Confidence 68778 679999999 5999998643 23344567888875 889888 898888653
No 85
>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1
Probab=86.87 E-value=0.47 Score=39.61 Aligned_cols=47 Identities=28% Similarity=0.730 Sum_probs=40.0
Q ss_pred cceeeeccCCCCCCCcccccCCchhhhhhccccchhhhcccccCCCCCccccCCcC
Q 008885 315 MCFKFIYSGSCPRGEKCNFRHDTDAREQCLRGVCLDFIIKGKCEKGPECSYKHSLQ 370 (550)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 370 (550)
+|.-| ..|.|..|+.|+|.|+ ..+|..|...|.|..|.+|++.|...
T Consensus 15 lC~~f-~~G~C~~G~~C~f~H~--------~~~C~~f~~~G~C~~G~~C~f~H~~~ 61 (98)
T 2cqe_A 15 LCKFY-ITGFCARAENCPYMHG--------DFPCKLYHTTGNCINGDDCMFSHDPL 61 (98)
T ss_dssp BCTTT-TTTCCSCSTTCSSBSS--------SSBCSHHHHTSCCSSCTTCSSBCCCC
T ss_pred cCccc-ccCcCCCCCCCCCCCC--------CCcCcCcccCCcCCCCCCCcccCCCC
Confidence 67666 4688999999999999 46788888899999999999999854
No 86
>1gup_A Galactose-1-phosphate uridylyltransferase; nucleotidyltransferase, galactose metabolism; HET: GDU; 1.80A {Escherichia coli} SCOP: d.13.1.2 d.13.1.2 PDB: 1guq_A* 1hxq_A* 1hxp_A*
Probab=86.77 E-value=3.6 Score=42.02 Aligned_cols=97 Identities=12% Similarity=0.066 Sum_probs=55.6
Q ss_pred CCCcccCCCCCCCcceEEEECC-EEEEEecCCCCC-C-------------------C-eEEEE-eccccCCCCCCCHHHH
Q 008885 389 KECWFCLSSPSVESHLIVSVGE-YYYCALPKGPLV-E-------------------D-HVLVI-PVEHVPNTISTSPECE 445 (550)
Q Consensus 389 ~~C~FC~~~~~~~~hliis~g~-~~yl~l~kgpl~-~-------------------g-H~lIi-P~~H~~s~~~l~~~~~ 445 (550)
..|.||-.|...... ..-+- .++++-++.|.. + | |-+|| .-.|..++.+++.+..
T Consensus 50 ~~CpfCpg~~~~t~~--~~p~~~~~~v~~N~fpal~~~~~~~~~~~~~l~~~~~~~G~~~VIi~sp~H~~~l~~l~~~~~ 127 (348)
T 1gup_A 50 PDCFLCAGNVRVTGD--KNPDYTGTYVFTNDFAALMSDTPDAPESHDPLMRCQSARGTSRVICFSPDHSKTLPELSVAAL 127 (348)
T ss_dssp TTCTTSTTCBCTTSC--BCCCCSSCEEEECTTCSCCTTCCCCCCCCCSSSCEEECCEEEEEEESCSCTTCCGGGSCHHHH
T ss_pred CCCCCCCCCcccCCC--CCCCCceEEEecCCCceeccCCCCccccCccceecCccceeEEEEEcCCcccCChhhCCHHHH
Confidence 369999887543110 01111 256665666533 1 2 44444 4489999999998776
Q ss_pred HHHHH-HHHHHHHHHhhcCCceEEEeec----CCCcCeEEEEEeecCC
Q 008885 446 KELGR-FQNSLMMYYKNQGKEAVFFEWL----SKRGTHANLQAVPIPT 488 (550)
Q Consensus 446 ~Ei~~-~~~~L~~~~~~~~~~~v~~E~~----~~~~~H~hi~~vPvp~ 488 (550)
.++.. +++.+..+. ..-.-|.+||+- +-...|-|.|++-.|.
T Consensus 128 ~~vi~~~~~r~~~l~-~~~~yV~iF~N~G~~~G~Sl~HpH~Qi~a~~~ 174 (348)
T 1gup_A 128 TEIVKTWQEQTAELG-KTYPWVQVFENKGAAMGCSNPHPGGQIWANSF 174 (348)
T ss_dssp HHHHHHHHHHHHHHH-HHCSEEEEEEEESGGGTCSCCSSEEEEEEESS
T ss_pred HHHHHHHHHHHHHHh-hcCCEEEEecccCCcCCcCCCCCceeEEeccc
Confidence 66654 455555555 333346677721 2224688888876554
No 87
>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens}
Probab=84.82 E-value=0.55 Score=37.96 Aligned_cols=53 Identities=32% Similarity=0.795 Sum_probs=40.5
Q ss_pred cceeeeccCCCCCCC-cccccCCchhh--hhhccccchhhhcccccCCCCCccccCCcC
Q 008885 315 MCFKFIYSGSCPRGE-KCNFRHDTDAR--EQCLRGVCLDFIIKGKCEKGPECSYKHSLQ 370 (550)
Q Consensus 315 ~~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 370 (550)
+|.+|.. |.|.+++ .|+|.|....- ....-.+|.+|. +|.|..+ .|++-|...
T Consensus 11 VCr~Flr-G~C~r~d~~C~f~H~~~~~~~~~~~~~vC~dfl-kG~C~r~-~C~y~H~~~ 66 (83)
T 3d2n_A 11 VCREFQR-GTCSRPDTECKFAHPSKSCQVENGRVIACFDSL-KGRCSRE-NCKYLHPPP 66 (83)
T ss_dssp BCTTGGG-TCCCSCTTTCSSBCCCTTCCEETTEEECCHHHH-TTCCCCS-SCSSCCCCH
T ss_pred hcHHHhc-CCCCCCCCCCCCcCCCccccccCCceeehhHhh-hccccCC-CcceeCChH
Confidence 7888888 9999997 99999997531 122346788884 6888888 888888754
No 88
>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=83.60 E-value=0.65 Score=36.84 Aligned_cols=52 Identities=27% Similarity=0.713 Sum_probs=41.3
Q ss_pred cceeeeccCCCCCCCcccccCCchhhhhhccccchhhhcccccCCCCCccccCCcCC
Q 008885 315 MCFKFIYSGSCPRGEKCNFRHDTDAREQCLRGVCLDFIIKGKCEKGPECSYKHSLQN 371 (550)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 371 (550)
+|.-|.+ |.|..|+.|+|.|+..... ..+|..|...|.|. |.+|++.|....
T Consensus 12 ~C~~fl~-G~C~~G~~C~fsH~~~~~~---~~~C~~f~~~G~C~-~~~C~f~H~~~~ 63 (77)
T 2d9n_A 12 VCKHWLR-GLCKKGDQCEFLHEYDMTK---MPECYFYSKFGECS-NKECPFLHIDPE 63 (77)
T ss_dssp BCHHHHT-TCCSCTTSSSSBCSCCTTT---SCBCHHHHHTCCCC-CSSCSSBCCCTT
T ss_pred eCHhHcc-CcCCCCCCCCCccccccCc---CCCCcccCCCCccC-CCCeeccCCCcc
Confidence 6777776 9999999999999975432 23687777768998 889999998753
No 89
>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens}
Probab=80.88 E-value=0.68 Score=37.93 Aligned_cols=53 Identities=32% Similarity=0.803 Sum_probs=40.7
Q ss_pred cceeeeccCCCCCCC-cccccCCchh--hhhhccccchhhhcccccCCCCCccccCCcC
Q 008885 315 MCFKFIYSGSCPRGE-KCNFRHDTDA--REQCLRGVCLDFIIKGKCEKGPECSYKHSLQ 370 (550)
Q Consensus 315 ~~~~~~~~~~~~~~~-~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 370 (550)
+|.+|.+ |.|.+++ .|+|.|.... .++..-.+|.+|. +|.|..+ .|++-|...
T Consensus 19 VCrdFlr-G~C~r~d~~CrfsH~~~~~~v~~~~~~vC~dfl-kG~C~r~-~Cky~H~~~ 74 (89)
T 2rpp_A 19 VCRQFQR-GTCSRSDEECKFAHPPKSCQVENGRVIACFDSL-KGRCSRE-NCKYLHPPT 74 (89)
T ss_dssp BCHHHHH-TCCCCCTTTSSSBCCCSSSCCBTTBEEBCHHHH-HTCCCCT-TCCSBCCCH
T ss_pred hchHHhc-CCCCCCCCCCCCcCCCccccccCCceeeehhhh-hCcCCCC-CcceecCHH
Confidence 7888888 9999998 9999998753 1223356888985 7888877 788887654
No 90
>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=80.33 E-value=0.42 Score=39.91 Aligned_cols=54 Identities=37% Similarity=0.902 Sum_probs=42.5
Q ss_pred CcceeeeccCCCCCCC-cccccCCchhh----hhhccccchhhhcccccCCCCCccccCCcC
Q 008885 314 KMCFKFIYSGSCPRGE-KCNFRHDTDAR----EQCLRGVCLDFIIKGKCEKGPECSYKHSLQ 370 (550)
Q Consensus 314 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 370 (550)
.+|..|.+ |.|.+|+ .|+|.|..... .+....+|.+|+. |.|..| +|++.|...
T Consensus 21 ~VCr~Flr-G~C~rgd~~C~FsH~~~~~~~~~~~~~~~vC~~flk-G~C~r~-~C~y~H~~~ 79 (98)
T 2e5s_A 21 EVCREFQR-GNCARGETDCRFAHPADSTMIDTSDNTVTVCMDYIK-GRCMRE-KCKYFHPPA 79 (98)
T ss_dssp EBCSHHHH-TCCSSHHHHCSSBCCSSCCSCCTTTCEEEBCHHHHH-TCCCCT-TCCSBCCCH
T ss_pred hhhHHHhc-CcCCCCCCCCCCcCCchhccccccCCccccchhhcc-CCCCCC-CcCccCChH
Confidence 38888887 9999999 79999997532 2344568888864 899988 999998764
No 91
>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens}
Probab=77.52 E-value=0.97 Score=35.40 Aligned_cols=52 Identities=27% Similarity=0.712 Sum_probs=39.5
Q ss_pred CcceeeeccCCCCCCCcccccCCchhhhhhccccchhhhcccccCCCCCccccCCcC
Q 008885 314 KMCFKFIYSGSCPRGEKCNFRHDTDAREQCLRGVCLDFIIKGKCEKGPECSYKHSLQ 370 (550)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 370 (550)
.+|.-|.+ |.|..|+.|+|.|+..... ..+|..|...|.|.. .+|++.|...
T Consensus 17 ~vCk~fl~-G~C~~G~~C~fsH~~~~~~---~~~C~~f~~~G~C~~-~~C~y~H~~p 68 (72)
T 2rhk_C 17 VVCKHWLR-GLCKKGDQCEFLHEYDMTK---MSECYFYSKFGECSN-KECPFLHIDP 68 (72)
T ss_dssp SBCHHHHT-TCCCCGGGSSSBCSCCTTS---CCBCHHHHHHSCCSB-TTCCSBCCCC
T ss_pred eeCHHHhc-CCCCCCCCCCCcccccccc---CCcccccCCCCCCCC-CCeeccCCCc
Confidence 37877776 9999999999999975432 336777776688887 7888887754
No 92
>3e0j_A DNA polymerase subunit delta-2; DNA polymerase delta, P66 subunit, P50 subunit, human, DNA replication, DNA-directed DNA polymerase; HET: DNA; 3.00A {Homo sapiens}
Probab=70.35 E-value=6.7 Score=41.79 Aligned_cols=118 Identities=14% Similarity=0.086 Sum_probs=64.9
Q ss_pred CEEEEEcCCCC--C-h--HHHHHHHHHHhh----------hcCCCcEEEEecCCCCCCh---------------------
Q 008885 4 PRILLCGDVLG--R-L--NQLFKRVQSVNK----------SAGPFDAVLCVGQFFPDSS--------------------- 47 (550)
Q Consensus 4 ~KILv~GDvhG--~-~--~~l~~kv~~l~~----------k~GpfD~li~~GDff~~~~--------------------- 47 (550)
.+|++++|+|= + + ..-++++..+.. ....+.-||++||......
T Consensus 201 ~~ialVSGL~igs~~~~~~~~~~ll~d~L~G~~g~~~~~~~as~I~rlIIAGn~v~~~~~~~e~~~~~~y~~~~~~~~~~ 280 (476)
T 3e0j_A 201 RFVLLVSGLGLGGGGGESLLGTQLLVDVVTGQLGDEGEQCSAAHVSRVILAGNLLSHSTQSRDSINKAKYLTKKTQAASV 280 (476)
T ss_dssp CEEEEECCCCBTSSCHHHHHHHHHHHHHHHTCSSCHHHHHHHTTEEEEEEESCSBCC-------------CHHHHHHHHH
T ss_pred CEEEEECCcccCCCcccchHHHHHHHHHHcCCCCCccccchhhceeEEEEECCccccccccchhhhhhhccccccchhhH
Confidence 58999999883 2 1 222233222211 1235899999999854310
Q ss_pred hhHHHHHHHhcccCCCCccEEEEecCCCChHHHHHHhhccccccC-cccCCceecCcEEEcCCCCeEEEcCeEEEEEeCc
Q 008885 48 ELLDEFMNYVEGRSEIPIPTYFIGDYGVGAAKVLLAASKNSANQG-FKMDGFKVTDNLFWLKGSGNFTLHGLSVAYLSGR 126 (550)
Q Consensus 48 ~~~~~~~~~l~g~~~~p~ptyfv~GNhe~~~~~l~~l~~~~~~~~-~~~~g~ei~~Nl~~Lg~~gv~~i~GlrIa~lgG~ 126 (550)
...+.+..||.. ....+|+..+|||||-....+ +....... |+. ... -.|+..+..--.++++|++|.+.+|.
T Consensus 281 ~~~~~ld~~L~~-l~~~i~V~lmPG~~DP~~~~l---PQqplh~~lfp~-s~~-~~~~~~vtNP~~~~i~G~~~LgtsGq 354 (476)
T 3e0j_A 281 EAVKMLDEILLQ-LSASVPVDVMPGEFDPTNYTL---PQQPLHPCMFPL-ATA-YSTLQLVTNPYQATIDGVRFLGTSGQ 354 (476)
T ss_dssp HHHHHHHHHHHH-HHTTSCEEEECCTTSSSCSSS---SCCCCCTTSCHH-HHT-STTEEECCSSEEEEETTEEEEECSSH
T ss_pred HHHHHHHHHHHh-cccCceEEecCCCCCcccccC---CCCCcCHHHhhh-hhh-cCccEEeCCCeEEEECCEEEEEECCC
Confidence 123356666643 334689999999997431111 10000000 000 000 13666666555678999999999996
Q ss_pred c
Q 008885 127 Q 127 (550)
Q Consensus 127 ~ 127 (550)
.
T Consensus 355 n 355 (476)
T 3e0j_A 355 N 355 (476)
T ss_dssp H
T ss_pred C
Confidence 3
No 93
>2d00_A V-type ATP synthase subunit F; V-ATPase, CHEY, FRET, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.149.1.1 PDB: 3a5c_H* 3a5d_H 3j0j_H*
Probab=65.48 E-value=25 Score=29.48 Aligned_cols=67 Identities=13% Similarity=0.193 Sum_probs=43.4
Q ss_pred CCCCEEEEEcCC---------------CCChHHHHHHHHHHhhhcCCCcEEEEecCCCCCChhhHHHHHHHhcccCCCCc
Q 008885 1 MSPPRILLCGDV---------------LGRLNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSSELLDEFMNYVEGRSEIPI 65 (550)
Q Consensus 1 M~~~KILv~GDv---------------hG~~~~l~~kv~~l~~k~GpfD~li~~GDff~~~~~~~~~~~~~l~g~~~~p~ 65 (550)
|..|||.|+||. --+-+.+.+.++++.+.. .+.+|++.=++...- .+.+..|. .....
T Consensus 1 m~~mkiaVIgD~dtv~GFrLaGi~~~~v~~~ee~~~~~~~l~~~~-digIIlIte~~a~~i---~~~i~~~~---~~~~~ 73 (109)
T 2d00_A 1 MVPVRMAVIADPETAQGFRLAGLEGYGASSAEEAQSLLETLVERG-GYALVAVDEALLPDP---ERAVERLM---RGRDL 73 (109)
T ss_dssp CCCCCEEEEECHHHHHHHHHTTSEEEECSSHHHHHHHHHHHHHHC-CCSEEEEETTTCSCH---HHHHHHHT---TCCCC
T ss_pred CCccEEEEEeCHHHHHHHHHcCCeEEEeCCHHHHHHHHHHHhhCC-CeEEEEEeHHHHHhh---HHHHHHHH---hCCCC
Confidence 899999999992 123355656666665543 578999998887642 33455663 24457
Q ss_pred c-EEEEecCC
Q 008885 66 P-TYFIGDYG 74 (550)
Q Consensus 66 p-tyfv~GNh 74 (550)
| ++.||+.+
T Consensus 74 P~Il~IPs~~ 83 (109)
T 2d00_A 74 PVLLPIAGLK 83 (109)
T ss_dssp CEEEEESCGG
T ss_pred eEEEEECCCc
Confidence 7 56677765
No 94
>2yeq_A Apased, PHOD, alkaline phosphatase D; hydrolase, phosphodiesterase; HET: PE5; 1.93A {Bacillus subtilis}
Probab=52.79 E-value=15 Score=39.46 Aligned_cols=76 Identities=9% Similarity=0.045 Sum_probs=39.0
Q ss_pred CCHHHHHHHHH-hhcCCCCccEEEeCCCCcccccccccc--ccccccCCCCCCcHHHHHHHHHhCCC--EEEEccCCCcc
Q 008885 137 YSQDDVDALRA-LAEEPGIVDLFLTNEWPSGVTNKAAAS--DMLVGISDSSNTDSTVSELVAEIKPR--YHIAGSKGVFY 211 (550)
Q Consensus 137 ~te~di~~L~~-l~~~~~~vDILLTh~wP~gi~~~~~~~--~~~~~~~~~~~Gs~~i~~l~~~lkPR--Yhf~Gh~~~f~ 211 (550)
+-+++.+-|+. |.+....--|+++|.+-..+....... ...+....-...-..+..++.+.+.+ .+++||.|.++
T Consensus 306 lG~~Q~~WL~~~L~~s~a~W~Iv~s~~p~~~~~~~~g~~~~~~~D~W~g~~~~R~~Ll~~l~~~~v~n~vvLsGDvH~~~ 385 (527)
T 2yeq_A 306 LGKEQEQWLFNNLGSSTAHWNVLAQQIFFAKWNFGTSASPIYSMDSWDGYPAQRERVINFIKSKNLNNVVVLTGDVHASW 385 (527)
T ss_dssp SCHHHHHHHHHHHHHCCSSEEEEECSSCCSCCCSSCSSSCCEETTSGGGSHHHHHHHHHHHHHTTCCCEEEEECSSSSEE
T ss_pred cCHHHHHHHHHHHhcCCCCeEEEEeCCcccccccCCCcccccCccchhccHHHHHHHHHHHHHhCCCCEEEEEcchHHHh
Confidence 44555555554 333334566888887766542110000 00000000011233566677777775 99999998766
Q ss_pred c
Q 008885 212 A 212 (550)
Q Consensus 212 e 212 (550)
-
T Consensus 386 ~ 386 (527)
T 2yeq_A 386 A 386 (527)
T ss_dssp E
T ss_pred H
Confidence 5
No 95
>3flo_A DNA polymerase alpha subunit B; protein-protein complex, phosphoesterase fold, OB fold, zinc motif, DNA replication, nucleus; HET: DNA; 2.50A {Saccharomyces cerevisiae}
Probab=52.71 E-value=30 Score=36.58 Aligned_cols=116 Identities=13% Similarity=0.165 Sum_probs=64.2
Q ss_pred CCEEEEEcCCCC-----ChHHHHHHHHHHhhhcCCCcEEEEecCCCCCC------------------hh-hHHHHHHH--
Q 008885 3 PPRILLCGDVLG-----RLNQLFKRVQSVNKSAGPFDAVLCVGQFFPDS------------------SE-LLDEFMNY-- 56 (550)
Q Consensus 3 ~~KILv~GDvhG-----~~~~l~~kv~~l~~k~GpfD~li~~GDff~~~------------------~~-~~~~~~~~-- 56 (550)
.++|+|+....- .++.|.+.+..++++ .+.|+||.+|.|.... .. -.+-|...
T Consensus 147 ~l~ivvAsGPyT~sdnl~yepL~~Ll~~v~~~-~kPdvLIL~GPFvD~~hp~i~~G~~p~~~~~~~~~~t~~~lF~~~i~ 225 (460)
T 3flo_A 147 SLKVIVTCGPYFANDNFSLELLQEFIDSINNE-VKPHVLIMFGPFIDITHPLIASGKLPNFPQFKTQPKTLDELFLKLFT 225 (460)
T ss_dssp CEEEEEEESCCSCSSCCCCHHHHHHHHHCCCC-CCCSEEEEESCSSBTTCHHHHHTCCCCCTTCSSCCSSHHHHHHHHTH
T ss_pred CcEEEEEeCCccCCCccChHHHHHHHHHHHhc-cCCCEEEEecCcccccCcccccCcccccccccccccCHHHHHHHHHH
Confidence 467777666544 355655555555442 2579999999995321 01 11223333
Q ss_pred --hcccCCCCccEEEEecCCCChHHHHHHhhccccccCcccCCceecC-cEEEcCCCCeEEEcCeEEEEEeC
Q 008885 57 --VEGRSEIPIPTYFIGDYGVGAAKVLLAASKNSANQGFKMDGFKVTD-NLFWLKGSGNFTLHGLSVAYLSG 125 (550)
Q Consensus 57 --l~g~~~~p~ptyfv~GNhe~~~~~l~~l~~~~~~~~~~~~g~ei~~-Nl~~Lg~~gv~~i~GlrIa~lgG 125 (550)
+.. ..-.+.+++|||++|.... -..++... +......+.. |++++..=.++.++|+.|+..+.
T Consensus 226 ~il~~-l~~~t~VVlVPS~rD~~~~-~~v~PQPp----f~~k~l~l~k~nv~~~sNPc~~~in~v~igvss~ 291 (460)
T 3flo_A 226 PILKT-ISPHIQTVLIPSTKDAISN-HAAYPQAS----LIRKALQLPKRNFKCMANPSSFQINEIYFGCSNV 291 (460)
T ss_dssp HHHTT-SCTTSEEEEECCTTBTTCS-CCSBSBCC----CCTTTTTCCTTTEEECCBSEEEEETTEEEEECCS
T ss_pred HHHHh-ccCCCEEEEeCCcccccCC-CCCcCCCC----CChhhhcCCcccEEEeCCCEEEEECCEEEEEEcH
Confidence 321 1223558999999875210 00112111 1111111334 99999987888999999975554
No 96
>3heb_A Response regulator receiver domain protein (CHEY); NYSGXRC, PSI-II, respose regulator, structure initiative, structural genomics; 2.40A {Rhodospirillum rubrum} SCOP: c.23.1.0
Probab=45.44 E-value=47 Score=27.90 Aligned_cols=15 Identities=40% Similarity=0.547 Sum_probs=9.3
Q ss_pred CC-CCEEEEEcCCCCC
Q 008885 1 MS-PPRILLCGDVLGR 15 (550)
Q Consensus 1 M~-~~KILv~GDvhG~ 15 (550)
|+ +++||++.|-...
T Consensus 1 M~~~~~ILivddd~~~ 16 (152)
T 3heb_A 1 MSLSVTIVMIEDDLGH 16 (152)
T ss_dssp ----CEEEEECCCHHH
T ss_pred CCCCceEEEEeCCHHH
Confidence 66 6899999985443
No 97
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=44.45 E-value=42 Score=27.07 Aligned_cols=18 Identities=22% Similarity=0.230 Sum_probs=12.1
Q ss_pred CCCCEEEEEcCCCCChHH
Q 008885 1 MSPPRILLCGDVLGRLNQ 18 (550)
Q Consensus 1 M~~~KILv~GDvhG~~~~ 18 (550)
|+++|||++.|-......
T Consensus 1 M~~~~ilivdd~~~~~~~ 18 (127)
T 3i42_A 1 MSLQQALIVEDYQAAAET 18 (127)
T ss_dssp -CCEEEEEECSCHHHHHH
T ss_pred CCcceEEEEcCCHHHHHH
Confidence 888899999985543333
No 98
>2lpm_A Two-component response regulator; transcription regulator; NMR {Sinorhizobium meliloti}
Probab=42.79 E-value=37 Score=28.82 Aligned_cols=68 Identities=19% Similarity=0.264 Sum_probs=35.2
Q ss_pred CC--CCEEEEEcCCCCChHHHHHHHHHH---------------hh-hcCCCcEEEEecCCCCCChhhHHHHHHHhcccCC
Q 008885 1 MS--PPRILLCGDVLGRLNQLFKRVQSV---------------NK-SAGPFDAVLCVGQFFPDSSELLDEFMNYVEGRSE 62 (550)
Q Consensus 1 M~--~~KILv~GDvhG~~~~l~~kv~~l---------------~~-k~GpfD~li~~GDff~~~~~~~~~~~~~l~g~~~ 62 (550)
|+ ++|||++=|-.-....+-..++.. .. +..+||++|+ |+.-++-...+ +.+.+ .+
T Consensus 4 m~~r~~rILiVdD~~~~~~~l~~~L~~~G~~v~~~a~~g~eAl~~~~~~~~Dlvll--Di~mP~~~G~e-l~~~l---r~ 77 (123)
T 2lpm_A 4 MTERRLRVLVVEDESMIAMLIEDTLCELGHEVAATASRMQEALDIARKGQFDIAII--DVNLDGEPSYP-VADIL---AE 77 (123)
T ss_dssp CCCCCCCEEEESSSTTTSHHHHHHHHHHCCCCCBCSCCHHHHHHHHHHCCSSEEEE--CSSSSSCCSHH-HHHHH---HH
T ss_pred CCCCCCEEEEEeCCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHhCCCCEEEE--ecCCCCCCHHH-HHHHH---Hc
Confidence 66 689999988776544433333221 00 1236787777 66333222122 22333 22
Q ss_pred CCccEEEEecCC
Q 008885 63 IPIPTYFIGDYG 74 (550)
Q Consensus 63 ~p~ptyfv~GNh 74 (550)
..+|++|+.|+.
T Consensus 78 ~~ipvI~lTa~~ 89 (123)
T 2lpm_A 78 RNVPFIFATGYG 89 (123)
T ss_dssp TCCSSCCBCTTC
T ss_pred CCCCEEEEecCc
Confidence 346778887753
No 99
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=41.37 E-value=57 Score=26.92 Aligned_cols=18 Identities=33% Similarity=0.346 Sum_probs=11.6
Q ss_pred CCCCEEEEEcCCCCChHH
Q 008885 1 MSPPRILLCGDVLGRLNQ 18 (550)
Q Consensus 1 M~~~KILv~GDvhG~~~~ 18 (550)
|.++|||++.|-......
T Consensus 1 M~~~~ilivdd~~~~~~~ 18 (143)
T 3jte_A 1 MSLAKILVIDDESTILQN 18 (143)
T ss_dssp --CCEEEEECSCHHHHHH
T ss_pred CCCCEEEEEcCCHHHHHH
Confidence 888899999986553333
No 100
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=41.36 E-value=58 Score=26.94 Aligned_cols=13 Identities=23% Similarity=0.325 Sum_probs=9.6
Q ss_pred CCEEEEEcCCCCC
Q 008885 3 PPRILLCGDVLGR 15 (550)
Q Consensus 3 ~~KILv~GDvhG~ 15 (550)
++|||++.|-...
T Consensus 5 ~~~ILivdd~~~~ 17 (144)
T 3kht_A 5 SKRVLVVEDNPDD 17 (144)
T ss_dssp CEEEEEECCCHHH
T ss_pred CCEEEEEeCCHHH
Confidence 6789999885443
No 101
>3aon_B V-type sodium ATPase subunit G; V-ATPase, coiled-coil, alpha/beta fold, hydrol Na(+)-ATPase, NTPA3-NTPB3, NTPC, central AXIS; HET: MSE; 2.00A {Enterococcus hirae}
Probab=38.87 E-value=50 Score=27.94 Aligned_cols=65 Identities=15% Similarity=0.152 Sum_probs=39.8
Q ss_pred CCCCEEEEEcCC---------------CCChHHHHHHHHHHhhhcCCCcEEEEecCCCCCChhhHHHHHHHhcccCCCCc
Q 008885 1 MSPPRILLCGDV---------------LGRLNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSSELLDEFMNYVEGRSEIPI 65 (550)
Q Consensus 1 M~~~KILv~GDv---------------hG~~~~l~~kv~~l~~k~GpfD~li~~GDff~~~~~~~~~~~~~l~g~~~~p~ 65 (550)
|+ |||.|+||. --+-+++.+.++++.+. .+.+|++.=++...- .+.+.+| .+...
T Consensus 1 m~-mKiaVIGD~Dtv~GFrLaGie~~~v~~~ee~~~~~~~l~~~--digIIlIte~ia~~i---~~~i~~~----~~~~~ 70 (115)
T 3aon_B 1 MT-YKIGVVGDKDSVSPFRLFGFDVQHGTTKTEIRKTIDEMAKN--EYGVIYITEQCANLV---PETIERY----KGQLT 70 (115)
T ss_dssp CE-EEEEEESCHHHHGGGGGGTCEEECCCSHHHHHHHHHHHHHT--TEEEEEEEHHHHTTC---HHHHHHH----HTSSS
T ss_pred Cc-eEEEEEECHHHHHHHHHcCCeEEEeCCHHHHHHHHHHHHhc--CceEEEEeHHHHHHh---HHHHHHH----hCCCC
Confidence 55 799999992 22445666666666554 577888877765432 2345555 23335
Q ss_pred c-EEEEecCCC
Q 008885 66 P-TYFIGDYGV 75 (550)
Q Consensus 66 p-tyfv~GNhe 75 (550)
| ++.||+.+.
T Consensus 71 P~IveIPs~~g 81 (115)
T 3aon_B 71 PAIILIPSHQG 81 (115)
T ss_dssp CEEEEECBTTB
T ss_pred CEEEEECCCCC
Confidence 6 466777653
No 102
>3h1g_A Chemotaxis protein CHEY homolog; sulfate-bound CHEY, cytoplasm, flagellar rotatio magnesium, metal-binding, phosphoprotein; 1.70A {Helicobacter pylori} SCOP: c.23.1.1 PDB: 3gwg_A 3h1e_A 3h1f_A
Probab=35.39 E-value=1e+02 Score=24.89 Aligned_cols=14 Identities=14% Similarity=0.313 Sum_probs=8.4
Q ss_pred CCCCEEEEEcCCCC
Q 008885 1 MSPPRILLCGDVLG 14 (550)
Q Consensus 1 M~~~KILv~GDvhG 14 (550)
|.++|||++.|-..
T Consensus 3 ~~~~~iLivdd~~~ 16 (129)
T 3h1g_A 3 LGSMKLLVVDDSST 16 (129)
T ss_dssp ---CCEEEECSCHH
T ss_pred CCCcEEEEEeCCHH
Confidence 34678999988544
No 103
>2pof_A CDP-diacylglycerol pyrophosphatase; NYSGXRC, PFAM02611, PSI-2, phospholipid biosynthesis structural genomics, protein structure initiative; 1.40A {Escherichia coli} SCOP: d.13.1.4
Probab=32.23 E-value=1.3e+02 Score=28.48 Aligned_cols=86 Identities=16% Similarity=0.157 Sum_probs=58.6
Q ss_pred CCCeEEEEeccccCCCCC---C---CHHHHHHHHHHHHHHHHHHhh-cCCceEEEeecC--CC---cCeEEEEEeecCCC
Q 008885 422 VEDHVLVIPVEHVPNTIS---T---SPECEKELGRFQNSLMMYYKN-QGKEAVFFEWLS--KR---GTHANLQAVPIPTS 489 (550)
Q Consensus 422 ~~gH~lIiP~~H~~s~~~---l---~~~~~~Ei~~~~~~L~~~~~~-~~~~~v~~E~~~--~~---~~H~hi~~vPvp~~ 489 (550)
-+-|.|+||...+.-+.+ + .++-|.+-...+..+.+.+.+ -.-+.+...+++ .| -.|.||-|+=
T Consensus 48 Gp~qyLLmPt~rItGIEsP~Ll~~~~pnYf~~AW~aR~~v~~~~g~pipd~~lsLaINS~~gRSQnQLHIHIsClr---- 123 (227)
T 2pof_A 48 GPLQYLLMPTYRINGTESPLLTDPSTPNFFWLAWQARDFMSKKYGQPVPDRAVSLAINSRTGRTQNHFHIHISCIR---- 123 (227)
T ss_dssp SSSCEEEEESSCCCSTTCGGGGSTTSCCHHHHHHHTTHHHHHHHTSCCCGGGEEEEEBCGGGCSCCSCCEEEEEBC----
T ss_pred CCceEEEeccccccCccChhhcCCCCCcHHHHHHHHhHHHHHhhCCCCCccceEEEecCCCCccccceeeehhhCC----
Confidence 455899999999888775 1 456788888887777777664 233445555222 23 3466666663
Q ss_pred chHHHHHHHHHHHHHcCCcccccc
Q 008885 490 KAAAVQDIFNLAAEKLGFKFLATK 513 (550)
Q Consensus 490 ~~~~~~~~F~~~~~~~~~~~~~~~ 513 (550)
..+.......+...+..|...+
T Consensus 124 --p~V~~~L~~~~~~i~~~W~~lp 145 (227)
T 2pof_A 124 --PDVREQLDNNLANISSRWLPLP 145 (227)
T ss_dssp --HHHHHHHHTTGGGCCSSCEECT
T ss_pred --HHHHHHHHHhccccCCCceECC
Confidence 5677777777788889998664
No 104
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=30.97 E-value=1.1e+02 Score=25.05 Aligned_cols=14 Identities=29% Similarity=0.408 Sum_probs=9.9
Q ss_pred CCCCEEEEEcCCCC
Q 008885 1 MSPPRILLCGDVLG 14 (550)
Q Consensus 1 M~~~KILv~GDvhG 14 (550)
|.+.+||++-|-..
T Consensus 2 m~~~~iLivdd~~~ 15 (136)
T 3t6k_A 2 MKPHTLLIVDDDDT 15 (136)
T ss_dssp -CCCEEEEECSCHH
T ss_pred CCCCEEEEEeCCHH
Confidence 66778999988544
No 105
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=30.44 E-value=1.4e+02 Score=24.46 Aligned_cols=69 Identities=13% Similarity=0.083 Sum_probs=34.9
Q ss_pred CCEEEEEcCCCCChHHHHHHHHHH--------------hh-hcCCCcEEEEecCCCCCChhhHHHHHHHhccc-CCCCcc
Q 008885 3 PPRILLCGDVLGRLNQLFKRVQSV--------------NK-SAGPFDAVLCVGQFFPDSSELLDEFMNYVEGR-SEIPIP 66 (550)
Q Consensus 3 ~~KILv~GDvhG~~~~l~~kv~~l--------------~~-k~GpfD~li~~GDff~~~~~~~~~~~~~l~g~-~~~p~p 66 (550)
.+|||++.|-......+-..+... .. +..++|+||+=-++.... .. ++...+... ....+|
T Consensus 8 ~~~iLivd~~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlii~d~~l~~~~--g~-~~~~~l~~~~~~~~~p 84 (147)
T 2zay_A 8 WWRIMLVDTQLPALAASISALSQEGFDIIQCGNAIEAVPVAVKTHPHLIITEANMPKIS--GM-DLFNSLKKNPQTASIP 84 (147)
T ss_dssp CEEEEEECTTGGGGHHHHHHHHHHTEEEEEESSHHHHHHHHHHHCCSEEEEESCCSSSC--HH-HHHHHHHTSTTTTTSC
T ss_pred CceEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHHcCCCCEEEEcCCCCCCC--HH-HHHHHHHcCcccCCCC
Confidence 578999998776555544433321 00 112577777754443321 12 223333211 224577
Q ss_pred EEEEecCC
Q 008885 67 TYFIGDYG 74 (550)
Q Consensus 67 tyfv~GNh 74 (550)
++++.+..
T Consensus 85 ii~ls~~~ 92 (147)
T 2zay_A 85 VIALSGRA 92 (147)
T ss_dssp EEEEESSC
T ss_pred EEEEeCCC
Confidence 77777753
No 106
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=29.98 E-value=1.2e+02 Score=24.75 Aligned_cols=16 Identities=38% Similarity=0.576 Sum_probs=11.2
Q ss_pred CCEEEEEcCCCCChHH
Q 008885 3 PPRILLCGDVLGRLNQ 18 (550)
Q Consensus 3 ~~KILv~GDvhG~~~~ 18 (550)
++|||++.|-......
T Consensus 6 ~~~iLivdd~~~~~~~ 21 (140)
T 3grc_A 6 RPRILICEDDPDIARL 21 (140)
T ss_dssp CSEEEEECSCHHHHHH
T ss_pred CCCEEEEcCCHHHHHH
Confidence 5799999886554433
No 107
>3c3m_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.70A {Methanoculleus marisnigri JR1}
Probab=29.03 E-value=2e+02 Score=23.32 Aligned_cols=14 Identities=36% Similarity=0.209 Sum_probs=10.0
Q ss_pred CCCCEEEEEcCCCC
Q 008885 1 MSPPRILLCGDVLG 14 (550)
Q Consensus 1 M~~~KILv~GDvhG 14 (550)
|+.++||++.|-..
T Consensus 1 m~~~~ILivdd~~~ 14 (138)
T 3c3m_A 1 MSLYTILVVDDSPM 14 (138)
T ss_dssp -CCCEEEEECSCHH
T ss_pred CCcceEEEEeCCHH
Confidence 67679999988544
No 108
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=28.92 E-value=1.3e+02 Score=24.50 Aligned_cols=19 Identities=21% Similarity=0.071 Sum_probs=11.6
Q ss_pred CC-CCEEEEEcCCCCChHHH
Q 008885 1 MS-PPRILLCGDVLGRLNQL 19 (550)
Q Consensus 1 M~-~~KILv~GDvhG~~~~l 19 (550)
|+ +++||++.|-......+
T Consensus 1 M~~~~~ilivdd~~~~~~~l 20 (140)
T 3lua_A 1 MSLDGTVLLIDYFEYEREKT 20 (140)
T ss_dssp --CCCEEEEECSCHHHHHHH
T ss_pred CCCCCeEEEEeCCHHHHHHH
Confidence 66 67999999865543333
No 109
>3to5_A CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, phosphorylation, motor AC signaling protein; 1.65A {Vibrio cholerae}
Probab=26.58 E-value=1.4e+02 Score=25.34 Aligned_cols=15 Identities=20% Similarity=0.310 Sum_probs=10.5
Q ss_pred CC-CCEEEEEcCCCCC
Q 008885 1 MS-PPRILLCGDVLGR 15 (550)
Q Consensus 1 M~-~~KILv~GDvhG~ 15 (550)
|. .+||||+=|-...
T Consensus 9 m~k~~rILiVDD~~~~ 24 (134)
T 3to5_A 9 LNKNMKILIVDDFSTM 24 (134)
T ss_dssp CCTTCCEEEECSCHHH
T ss_pred hCCCCEEEEEeCCHHH
Confidence 44 5799999885543
No 110
>2iuy_A Avigt4, glycosyltransferase; antibiotics, family GT-4, avilamycin A; HET: MES; 2.1A {Streptomyces viridochromogenes} PDB: 2iv3_A*
Probab=24.43 E-value=70 Score=30.97 Aligned_cols=12 Identities=25% Similarity=0.357 Sum_probs=9.2
Q ss_pred CCCCEEEEEcCC
Q 008885 1 MSPPRILLCGDV 12 (550)
Q Consensus 1 M~~~KILv~GDv 12 (550)
|.+||||+++..
T Consensus 1 M~~mkIl~v~~~ 12 (342)
T 2iuy_A 1 MRPLKVALVNIP 12 (342)
T ss_dssp --CCEEEEECCC
T ss_pred CCccEEEEEecc
Confidence 888999999987
No 111
>2d9m_A Zinc finger CCCH-type domain containing protein 7A; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.33 E-value=17 Score=28.04 Aligned_cols=30 Identities=27% Similarity=0.826 Sum_probs=23.8
Q ss_pred CcceeeeccCCCCCCCcccccCCchhhhhhc
Q 008885 314 KMCFKFIYSGSCPRGEKCNFRHDTDAREQCL 344 (550)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (550)
..|..| ..|.|+-|+.|.|.|-...-.+..
T Consensus 21 ~LC~~~-~~G~C~~G~~C~FAHG~~ELr~~~ 50 (69)
T 2d9m_A 21 SICDRY-MNGTCPEGNSCKFAHGNAELHEWE 50 (69)
T ss_dssp SBCHHH-HHSCCSSCSSCSSBSSHHHHHHHH
T ss_pred ccCccc-CcCCCCCCCccCCcCCHHHHhhHH
Confidence 378888 789999999999999976554433
No 112
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=23.54 E-value=1.9e+02 Score=23.41 Aligned_cols=15 Identities=7% Similarity=-0.031 Sum_probs=10.5
Q ss_pred CCEEEEEcCCCCChH
Q 008885 3 PPRILLCGDVLGRLN 17 (550)
Q Consensus 3 ~~KILv~GDvhG~~~ 17 (550)
+++||++.|-.....
T Consensus 7 ~~~iLivdd~~~~~~ 21 (142)
T 3cg4_A 7 KGDVMIVDDDAHVRI 21 (142)
T ss_dssp CCEEEEECSCHHHHH
T ss_pred CCeEEEEcCCHHHHH
Confidence 678999988654333
No 113
>3n53_A Response regulator receiver modulated diguanylate; diguanylate cyclase, protein structure I II(PSI II), NYSGXRC, structural genomics; 2.20A {Pelobacter carbinolicus} SCOP: c.23.1.0
Probab=23.23 E-value=1.1e+02 Score=24.97 Aligned_cols=14 Identities=29% Similarity=0.152 Sum_probs=9.4
Q ss_pred CCCCEEEEEcCCCC
Q 008885 1 MSPPRILLCGDVLG 14 (550)
Q Consensus 1 M~~~KILv~GDvhG 14 (550)
|+++|||++.|-.-
T Consensus 1 M~~~~iLivdd~~~ 14 (140)
T 3n53_A 1 MSLKKILIIDQQDF 14 (140)
T ss_dssp --CCEEEEECSCHH
T ss_pred CCCCEEEEEeCCHH
Confidence 78889999988543
No 114
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=22.84 E-value=2.1e+02 Score=22.73 Aligned_cols=14 Identities=29% Similarity=0.589 Sum_probs=8.5
Q ss_pred CC-CCEEEEEcCCCC
Q 008885 1 MS-PPRILLCGDVLG 14 (550)
Q Consensus 1 M~-~~KILv~GDvhG 14 (550)
|. +++||++.|-..
T Consensus 1 M~~~~~ilivdd~~~ 15 (133)
T 3nhm_A 1 MSLKPKVLIVENSWT 15 (133)
T ss_dssp ----CEEEEECSCHH
T ss_pred CCCCCEEEEEcCCHH
Confidence 54 689999988543
No 115
>1e2b_A Enzyme IIB-cellobiose; phosphotransferase system, transferas transport, phosphorylation; NMR {Escherichia coli} SCOP: c.44.2.1 PDB: 1iib_A 1h9c_A* 2wwv_D 2wy2_D
Probab=21.95 E-value=1.4e+02 Score=24.42 Aligned_cols=43 Identities=9% Similarity=-0.011 Sum_probs=30.6
Q ss_pred CCCCEEEEEcCCCCChHHHHHHHHHHhhhcCCCcEEEEecCCCC
Q 008885 1 MSPPRILLCGDVLGRLNQLFKRVQSVNKSAGPFDAVLCVGQFFP 44 (550)
Q Consensus 1 M~~~KILv~GDvhG~~~~l~~kv~~l~~k~GpfD~li~~GDff~ 44 (550)
|..+|||++-..--.-.-+.++++++.++.| .|+-|-+.++-.
T Consensus 1 M~mkkIll~Cg~G~sTS~l~~k~~~~~~~~g-i~~~i~a~~~~~ 43 (106)
T 1e2b_A 1 MEKKHIYLFSSAGMSTSLLVSKMRAQAEKYE-VPVIIEAFPETL 43 (106)
T ss_dssp CCCEEEEEECSSSTTTHHHHHHHHHHHHHSC-CSEEEEEECSSS
T ss_pred CCCcEEEEECCCchhHHHHHHHHHHHHHHCC-CCeEEEEecHHH
Confidence 6666787665444455578888998888886 777777777754
No 116
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=21.85 E-value=2.6e+02 Score=22.12 Aligned_cols=14 Identities=21% Similarity=0.045 Sum_probs=9.9
Q ss_pred CCEEEEEcCCCCCh
Q 008885 3 PPRILLCGDVLGRL 16 (550)
Q Consensus 3 ~~KILv~GDvhG~~ 16 (550)
.+|||++.|-....
T Consensus 7 ~~~ilivdd~~~~~ 20 (130)
T 3eod_A 7 GKQILIVEDEQVFR 20 (130)
T ss_dssp TCEEEEECSCHHHH
T ss_pred CCeEEEEeCCHHHH
Confidence 57899998855433
No 117
>1k66_A Phytochrome response regulator RCPB; CHEY homologue, homodimer, APO-protein, (beta/alpha)5, signaling protein; 1.75A {Tolypothrix SP} SCOP: c.23.1.1
Probab=21.77 E-value=1.8e+02 Score=23.61 Aligned_cols=15 Identities=13% Similarity=0.191 Sum_probs=10.2
Q ss_pred CCCEEEEEcCCCCCh
Q 008885 2 SPPRILLCGDVLGRL 16 (550)
Q Consensus 2 ~~~KILv~GDvhG~~ 16 (550)
..+|||++.|-....
T Consensus 5 ~~~~iLivdd~~~~~ 19 (149)
T 1k66_A 5 ATQPLLVVEDSDEDF 19 (149)
T ss_dssp TTSCEEEECCCHHHH
T ss_pred CCccEEEEECCHHHH
Confidence 367899988855433
No 118
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae}
Probab=21.76 E-value=2.4e+02 Score=22.35 Aligned_cols=14 Identities=29% Similarity=0.264 Sum_probs=10.4
Q ss_pred CCCCEEEEEcCCCC
Q 008885 1 MSPPRILLCGDVLG 14 (550)
Q Consensus 1 M~~~KILv~GDvhG 14 (550)
|.+++||++.|-..
T Consensus 3 m~~~~ilivdd~~~ 16 (132)
T 2rdm_A 3 LEAVTILLADDEAI 16 (132)
T ss_dssp CSSCEEEEECSSHH
T ss_pred CCCceEEEEcCcHH
Confidence 44679999988554
No 119
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=20.62 E-value=3.1e+02 Score=21.60 Aligned_cols=13 Identities=38% Similarity=0.488 Sum_probs=8.3
Q ss_pred CCCCEEEEEcCCCC
Q 008885 1 MSPPRILLCGDVLG 14 (550)
Q Consensus 1 M~~~KILv~GDvhG 14 (550)
|+ .|||++-|-.-
T Consensus 1 m~-~~ILivdd~~~ 13 (122)
T 3gl9_A 1 MS-KKVLLVDDSAV 13 (122)
T ss_dssp -C-CEEEEECSCHH
T ss_pred CC-ceEEEEeCCHH
Confidence 54 48999888543
No 120
>3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei}
Probab=20.35 E-value=1.3e+02 Score=26.26 Aligned_cols=14 Identities=29% Similarity=0.185 Sum_probs=9.5
Q ss_pred CCCCEEEEEcCCCC
Q 008885 1 MSPPRILLCGDVLG 14 (550)
Q Consensus 1 M~~~KILv~GDvhG 14 (550)
|.++|||++-|-.-
T Consensus 5 m~~~~iLivdd~~~ 18 (184)
T 3rqi_A 5 MSDKNFLVIDDNEV 18 (184)
T ss_dssp --CCEEEEECSCHH
T ss_pred CCCCeEEEEcCCHH
Confidence 66789999988544
No 121
>3h3e_A Uncharacterized protein TM1679; structural genomics, surface entropy reduction, ISFI, beta- lactamase superfamily, PSI-2; 2.75A {Thermotoga maritima}
Probab=20.26 E-value=2.9e+02 Score=26.58 Aligned_cols=90 Identities=7% Similarity=0.117 Sum_probs=50.4
Q ss_pred EEEEcCCCCChHHHHHHHHHHhhhcCCCcEEEEecCCC--CCChhhHHHHHHHhcccCCCCccEEEEecCCCChHHHHHH
Q 008885 6 ILLCGDVLGRLNQLFKRVQSVNKSAGPFDAVLCVGQFF--PDSSELLDEFMNYVEGRSEIPIPTYFIGDYGVGAAKVLLA 83 (550)
Q Consensus 6 ILv~GDvhG~~~~l~~kv~~l~~k~GpfD~li~~GDff--~~~~~~~~~~~~~l~g~~~~p~ptyfv~GNhe~~~~~l~~ 83 (550)
|+++||.|.-+-.+++.+.++- | -.+.-++|=|- ....+..++..+|+ .++. |..++++.+- .......
T Consensus 175 vvitGCsH~GI~Niv~~a~~~~---g-~~i~~viGGfHL~~~~~~~l~~tl~~l---~~~~-~~~i~~~HCT-g~~a~~~ 245 (267)
T 3h3e_A 175 VVITGCSHRGIDNILLDIAETF---N-ERIKMVVGGFHLLKSSDDEIEKIVKAF---NELG-VETVVPCHCT-GERAVDI 245 (267)
T ss_dssp EEEESCCTTCHHHHHHHHHTTC---S-SCEEEEEEECCCTTSCHHHHHHHHHHH---HHTT-CCEEEEETTS-CHHHHHH
T ss_pred EEEeCCCCcCHHHHHHHHHHHh---C-CCceEEEeccccCCCCHHHHHHHHHHH---HhcC-CCEEEEECCC-CHHHHHH
Confidence 8999999999888877766543 3 23666778883 33333444555565 3333 3355555333 2333343
Q ss_pred hhccccccCcccCCceecCcEEEcCCCCeEEEc
Q 008885 84 ASKNSANQGFKMDGFKVTDNLFWLKGSGNFTLH 116 (550)
Q Consensus 84 l~~~~~~~~~~~~g~ei~~Nl~~Lg~~gv~~i~ 116 (550)
+.. ++.+++.++..+-+++++
T Consensus 246 L~~------------~lp~~v~~~~~G~~iei~ 266 (267)
T 3h3e_A 246 FKR------------EFLGKIMDCYAGLKLEVS 266 (267)
T ss_dssp HHH------------HCSSEECCCCTTCEEEEC
T ss_pred HHH------------HCCCCEEEecCceEEEeC
Confidence 431 234666666544444443
Done!