BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008887
(550 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q0WUC5|ALB33_ARATH ALBINO3-like protein 3, mitochondrial OS=Arabidopsis thaliana
GN=ALB3L3 PE=2 SV=1
Length = 566
Score = 471 bits (1211), Expect = e-132, Method: Compositional matrix adjust.
Identities = 235/431 (54%), Positives = 306/431 (70%), Gaps = 4/431 (0%)
Query: 107 LISFLDTYHDFTGFPWWTIIVSSTVALRIALLPLIVLQLKKIQRIAELLPRLPPPFPPPL 166
+IS LD+YHD TG PWW +I +STVA R ALLP+++LQ K+ +RI++ LP+LP +PP
Sbjct: 123 VISLLDSYHDITGLPWWVVIATSTVAFRTALLPILILQRKQTKRISQFLPKLPHFWPPQG 182
Query: 167 SGKRFVDQISLFRREKRAAGCPSLLWFIASFAIQVPCFLVGVTSIRRMSLDGHPGFDCGG 226
SG+ +DQ+ LFR+E++ GCPS LW A F+IQ+ CF + +TSIRRMSLD HPGFD GG
Sbjct: 183 SGRSVLDQLKLFRKERKDIGCPSFLWVPAYFSIQISCFFLWITSIRRMSLDHHPGFDSGG 242
Query: 227 IWWFQNLTEYPHGVLGSIFPVLMAGLHYTNVQLSFGASSLGKENGLLGLLAKYYKSYLNL 286
WFQNLTE P+G+ G +FP L+AGLHYTN Q++F ASS+ K + LAK YK++LNL
Sbjct: 243 ALWFQNLTEIPNGLYGPLFPFLIAGLHYTNTQITFTASSVHKVDKFTE-LAKAYKTFLNL 301
Query: 287 MTLPLFFLGYYIPQGSLVYWVTNSSFSIVQQLALKHPASRTMLGL-PDKVVPAAARKPEE 345
+T L+FL + +PQGSL+YW TN SFSI QQ L HP LGL + V A P
Sbjct: 302 LTCALYFLSFQMPQGSLLYWATNLSFSIAQQSILNHPVVSAKLGLQANDSVQKEAGNPIL 361
Query: 346 IDTLETTLESPAKQLK-ISVENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNIN 404
+ E L P+ + + ISV NLTPKEL+ALS K+LS G K++ IPLL+LAL K+P+ +
Sbjct: 362 TNINEGKLTDPSSKGRLISVHNLTPKELVALSAKYLSGGHKDKSIPLLRLALEKDPEYLQ 421
Query: 405 ALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEK 464
A+I++GQ QK EA + LE A SKL L PTE E +DLLIVASQW+GV+ IRQ K
Sbjct: 422 AMIILGQALYQKDQFAEAAKCLEQAASKL-LDTSPTEVEEVDLLIVASQWAGVSNIRQGK 480
Query: 465 WEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQY 524
EGI HLER+ N+KEP++PKSKAHY D LV+ +SA+ N GR EA KYLR A++P +
Sbjct: 481 TSEGITHLERVANMKEPDDPKSKAHYLDALVLYSSAIFNEGRREEAAKYLRRVVAYDPSF 540
Query: 525 NELLEQLENND 535
+ELL+Q E +D
Sbjct: 541 SELLKQCEEDD 551
>sp|Q8L718|ALB32_ARATH ALBINO3-like protein 2, chloroplastic OS=Arabidopsis thaliana
GN=ALB3L2 PE=2 SV=2
Length = 525
Score = 451 bits (1161), Expect = e-126, Method: Compositional matrix adjust.
Identities = 243/459 (52%), Positives = 330/459 (71%), Gaps = 4/459 (0%)
Query: 93 ESIAGEESSLPVRALISFLDTYHDFTGFPWWTIIVSSTVALRIALLPLIVLQLKKIQRIA 152
E I ++SSLPV A++ FL+ +H+FTG PWW II SSTVA+R+ALLPL++LQLKK++ I+
Sbjct: 69 EIIPTDDSSLPVLAVVDFLEGFHEFTGLPWWMIIASSTVAVRLALLPLLILQLKKLKTIS 128
Query: 153 ELLPRLPPPFPPPLSGKRFVDQISLFRREKRAAGCPSLLWFIASFAIQVPCFLVGVTSIR 212
ELLP+LP P P + K +DQ S F +E RA GCPS LWF ++Q+PCF + + SIR
Sbjct: 129 ELLPKLPMPIPETPTLKGSIDQFSHFLKESRAIGCPSFLWFFPYLSVQLPCFFLLMASIR 188
Query: 213 RMSLDGHPGFDCGGIWWFQNLTEYPHGVLGSIFPVLMAGLHYTNVQLSFGASSLGKENGL 272
+MSLDGHPGFD GG+ WFQNL++ P G G +FP+L+A HY N+Q+SF S++ + GL
Sbjct: 189 KMSLDGHPGFDSGGVLWFQNLSDLPGGSFGPVFPILIATFHYINIQISFDTSTIRQTTGL 248
Query: 273 LGLLAKYYKSYLNLMTLPLFFLGYYIPQGSLVYWVTNSSFSIVQQLALKHPASRTMLGLP 332
GLL +YYK YL ++++PLFF+GY IPQGSLVYWVTNSS +I QQL+LKHP LGL
Sbjct: 249 TGLLMRYYKLYLEILSVPLFFVGYAIPQGSLVYWVTNSSVNIFQQLSLKHPTVGAKLGLL 308
Query: 333 DK-VVPAAARKPEEIDTLETTLESPAKQLKISVENLTPKELIALSVKFLSKGDKERPIPL 391
+ P E +++ ++S +K+ +S++ LTP+EL++LSV+ LSKGDKE I L
Sbjct: 309 SQGATPGMGHSMEISESVIKYVDSDSKEQTLSLQTLTPEELLSLSVQVLSKGDKETSIQL 368
Query: 392 LQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVA 451
L+LAL K+P + L+LMGQ LQK L EA EYLE AISKL L P++ E ++LL++A
Sbjct: 369 LRLALEKDPGYVRGLVLMGQALLQKTQLSEATEYLELAISKL-LDEDPSDAEDVELLMLA 427
Query: 452 SQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAE 511
SQW+G A ++Q K + GI HLER+ L+EP +PKSK HY++ L++L+SAL G++ EA
Sbjct: 428 SQWAGAAYVQQGKLKSGIIHLERVAKLREPGDPKSKEHYFEALLLLSSALYKEGQSDEAA 487
Query: 512 KYLRLAAAHNPQYNELLEQLENNDEEFVSDLSSSRRRDY 550
K LR+ HNP Y LLEQ E+ + E VSDL SRR+D+
Sbjct: 488 KILRVVVDHNPAYKPLLEQCEDEN-ELVSDL-VSRRKDH 524
>sp|Q42191|OXA1_ARATH Mitochondrial inner membrane protein OXA1 OS=Arabidopsis thaliana
GN=OXA1 PE=2 SV=2
Length = 429
Score = 95.9 bits (237), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 70/246 (28%), Positives = 115/246 (46%), Gaps = 19/246 (7%)
Query: 94 SIAGEESSLPVRALISFLDTYHDFTGFPWWTIIVSSTVALRIALLPLIVLQLKKIQRIAE 153
++A +S P+ AL +D H FTGF WW IV +T+ +R + +PL++ Q+K ++A
Sbjct: 124 TLAAADSFFPIAALQQCIDMVHTFTGFEWWASIVVATILIRSSTVPLLIKQMKDTTKLAL 183
Query: 154 LLPRLPPPFPPPLSGKRFVDQISLFRREKRAA------GCPSLLWFIASFAIQVPCFLVG 207
+ PRL + K +D +++ +K+ G F IQ P F+
Sbjct: 184 MRPRL-ESIREEMQNKG-MDSVTMAEGQKKMKNLFKEYGVTPFTPMKGMF-IQGPLFICF 240
Query: 208 VTSIRRMSLDGHPGFDCGGIWWFQNLTEYPHGVLGSIFPVLMAGLHYTNVQLSFGASSLG 267
+IR M+ + P F GG WF +LT P + I PV+ V+ + + G
Sbjct: 241 FLAIRNMA-EKVPSFQTGGALWFTDLTT-PDSLY--ILPVITGLTFLITVECN---AQEG 293
Query: 268 KENGLLGLLAKYYKSYLNLMTLPLFFLGYYIPQGSLVYWVTNSSFSIVQQLALKHPASRT 327
E + K L+T+P + PQ YW+T++ FS++ L +K P +
Sbjct: 294 MEGNPMAGTVKTVCRVFALLTVP---MTMSFPQAIFCYWITSNLFSLMYGLVIKRPQVKK 350
Query: 328 MLGLPD 333
ML +PD
Sbjct: 351 MLRIPD 356
>sp|Q3SYV3|OXA1L_BOVIN Mitochondrial inner membrane protein OXA1L OS=Bos taurus GN=OXA1L
PE=2 SV=1
Length = 441
Score = 86.7 bits (213), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 71/266 (26%), Positives = 115/266 (43%), Gaps = 23/266 (8%)
Query: 97 GEESSLPVRALISFLDTYHDFTGFPWWTIIVSSTVALRIALLPLIVLQLKKIQRIAELLP 156
G S PV + + L+ H G PWW I + TV R + PLIV ++ +I LP
Sbjct: 115 GLGSYTPVGLIQNLLEFMHVNLGLPWWGAIAACTVLARCLVFPLIVKGQREAAKIHNHLP 174
Query: 157 RLPPPFPPPLSGKRFVDQISLFRREKRAAGCPSLLWFIASFA------IQVPCFLVGVTS 210
+ F + + + F R I F Q P F+ +
Sbjct: 175 EIQK-FSARIREAKLTGNHTEFYRASSEMTFYQKKHDIKLFRPLILPLTQAPIFISFFIA 233
Query: 211 IRRMSLDGHPGFDCGGIWWFQNLT-EYPHGVLGSIFPVLMAGLHYTNVQLSFGASSLGKE 269
+R M+ P GG+WWFQ+LT P VL + M +G LG E
Sbjct: 234 LREMANLPVPSLQTGGLWWFQDLTLSDPIYVLPLVVTATM-----------WGVLELGAE 282
Query: 270 NGLLGLLAKYYKSYLNLMTLPLFFLGYYIPQGSLVYWVTNSSFSIVQQLALKHPASRTML 329
G+ ++ ++++ LM L + + + P +YW++++ FS+ Q L+ PA RT+L
Sbjct: 283 TGMQSSDLQWMRNFIRLMPLAVLPITIHFPTAVFMYWLSSNMFSLGQVACLRIPAVRTVL 342
Query: 330 GLPDKVVPAAARKPEEIDTLETTLES 355
+P +VV P+++ E L+S
Sbjct: 343 KIPQRVV----HDPDKLAPREGFLKS 364
>sp|Q15070|OXA1L_HUMAN Mitochondrial inner membrane protein OXA1L OS=Homo sapiens GN=OXA1L
PE=1 SV=3
Length = 435
Score = 85.1 bits (209), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 72/275 (26%), Positives = 118/275 (42%), Gaps = 45/275 (16%)
Query: 97 GEESSLPVRALISFLDTYHDFTGFPWWTIIVSSTVALRIALLPLIVLQLKKIQRIAELLP 156
G S PV + + L+ H G PWW I + TV R + PLIV ++ RI LP
Sbjct: 115 GLGSYTPVGLIQNLLEFMHVDLGLPWWGAIAACTVFARCLIFPLIVTGQREAARIHNHLP 174
Query: 157 RLPPPFPPPLSGKRFVDQISLFRREKRAAGCPSLLWFIASFAI----------------- 199
+ ++F +I RE + AG + ++ AS +
Sbjct: 175 EI----------QKFSSRI----REAKLAG-DHIEYYKASSEMALYQKKHGIKLYKPLIL 219
Query: 200 ---QVPCFLVGVTSIRRMSLDGHPGFDCGGIWWFQNLTEYPHGVLGSIFPVLMAGLHYTN 256
Q P F+ ++R M+ P GG+WWFQ+LT P+ + L T
Sbjct: 220 PVTQAPIFISFFIALREMANLPVPSLQTGGLWWFQDLTVSD--------PIYILPLAVTA 271
Query: 257 VQLSFGASSLGKENGLLGLLAKYYKSYLNLMTLPLFFLGYYIPQGSLVYWVTNSSFSIVQ 316
+ LG E G+ ++ ++ + +M L + + P +YW++++ FS+VQ
Sbjct: 272 TM--WAVLELGAETGVQSSDLQWMRNVIRMMPLITLPITMHFPTAVFMYWLSSNLFSLVQ 329
Query: 317 QLALKHPASRTMLGLPDKVVPAAARKPEEIDTLET 351
L+ PA RT+L +P +VV + P LE+
Sbjct: 330 VSCLRIPAVRTVLKIPQRVVHDLDKLPPREGFLES 364
>sp|Q8BGA9|OXA1L_MOUSE Mitochondrial inner membrane protein OXA1L OS=Mus musculus GN=Oxa1l
PE=2 SV=1
Length = 433
Score = 83.6 bits (205), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 71/272 (26%), Positives = 121/272 (44%), Gaps = 23/272 (8%)
Query: 97 GEESSLPVRALISFLDTYHDFTGFPWWTIIVSSTVALRIALLPLIVLQLKKIQRIAELLP 156
G S PV + + L+ H G PWW I + TV R + PLIV ++ +I +P
Sbjct: 110 GLGSYTPVGLIQNLLEYIHVDLGLPWWGAIATCTVLARCLVFPLIVKGQREAAKIHNHMP 169
Query: 157 RLPPPFPPPLSGKRFVDQISLFR------REKRAAGCPSLLWFIASFAIQVPCFLVGVTS 210
+ K DQ ++ R ++ L I Q P F+ +
Sbjct: 170 EMQKFSARIREAKLAGDQAEFYKATIEMTRYQKKHDIKLLRPLILPLT-QAPVFISFFIA 228
Query: 211 IRRMSLDGHPGFDCGGIWWFQNLT-EYPHGVLGSIFPVLMAGLHYTNVQLSFGASSLGKE 269
+R M+ P GG+WWFQ+LT P VL P+++ + ++L G E
Sbjct: 229 LREMANLPVPSLQTGGLWWFQDLTVSDPIYVL----PLVVTATMWCVLEL-------GAE 277
Query: 270 NGLLGLLAKYYKSYLNLMTLPLFFLGYYIPQGSLVYWVTNSSFSIVQQLALKHPASRTML 329
G+ ++ ++ + +M L + + + P +YW++++ FS+ Q L+ PA RT+L
Sbjct: 278 TGVQSNDLQFMRNIIRVMPLVVLPVTIHFPSAVFMYWLSSNVFSLCQVACLRIPAVRTVL 337
Query: 330 GLPDKVVPAAARKPEEIDTLETTLESPAKQLK 361
+P +VV P+++ E L+S K K
Sbjct: 338 KIPQRVV----HDPDKLPPREGFLKSFKKGWK 365
>sp|O14300|OXA11_SCHPO Mitochondrial inner membrane protein oxa1-1 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=oxa101 PE=2 SV=1
Length = 374
Score = 81.3 bits (199), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 70/258 (27%), Positives = 122/258 (47%), Gaps = 27/258 (10%)
Query: 113 TYHDFTGFPWWTIIVSSTVALRIALLPLIVLQLKKIQRIAELLPRLPPPFPPPLSGKRFV 172
T + + G PWW I+ +T+ +R+AL P+++ + +++ + P + + K
Sbjct: 77 TINVYAGAPWWVSIILTTLGVRLALTPVMIASFRNSTKLSVIQPEMKKELEAIKTAKLDN 136
Query: 173 DQISLFRREKRAAGCPSLLWFIASFAI------QVPCFLVGVTSIRRMSLDGHPGFDCGG 226
DQ++L + G L + FAI Q F +IR+MS GF GG
Sbjct: 137 DQLALNQHSIALRGI-YLKHNVNPFAIFILPLTQSAVFFSFFYAIRKMSRLSVDGFTTGG 195
Query: 227 IWWFQNLT-EYPHGVLGSIFPVLMAGLHYTNVQLSFG--ASSLGKENGLLGLLAKYYKSY 283
+ WF++L+ P+ +L P++ AGL ++ +Q++ AS++G ++++
Sbjct: 196 LAWFKDLSIPDPYCIL----PIINAGLMFSGMQMNRANTASTIGNSTN--------WRTF 243
Query: 284 LNLMTLPLFFLGYYIPQGSLVYWVTNSSFSIVQQLALKHPASRTMLGLPDKVVPAAARKP 343
L L L +P +YW+ +S F+IVQ LK+P R+ LG +P+ K
Sbjct: 244 FFLCCLLSPLLTAKLPAAIFMYWIPSSLFNIVQGYILKNPVVRSKLGFAP--LPSIIEKQ 301
Query: 344 EEIDTLETTLESPAKQLK 361
TL T +P K LK
Sbjct: 302 PSGFTLIT---NPIKSLK 316
>sp|Q9SKD3|OXA1L_ARATH Mitochondrial inner membrane protein OXA1-like OS=Arabidopsis
thaliana GN=OXA1L PE=2 SV=1
Length = 431
Score = 80.9 bits (198), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 73/259 (28%), Positives = 120/259 (46%), Gaps = 28/259 (10%)
Query: 94 SIAGEESSLPVRALISFLDTYHDFTGFPWWTIIVSSTVALRIALLPLIVLQLKKIQRIAE 153
+IA +S+ PV AL +D H FTG WW I +TV +R +P+++ QLK ++
Sbjct: 127 AIAAADSAFPVAALQHLIDAVHSFTGLNWWASIALTTVLIRGVTIPILLNQLKATYKLNV 186
Query: 154 LLPRL---------PPPFPPPLS-GKRFVDQISLFRREKRAAGCPSLLWFIASFAIQVPC 203
L P+L P ++ G+R + LF+ P + IQ P
Sbjct: 187 LRPQLEELRQEMSTKAQDPEAMAEGQRRMQL--LFKEHGVTPFTP-----LKGLIIQGPI 239
Query: 204 FLVGVTSIRRMSLDGHPGFDCGGIWWFQNLTEYPHGVLGSIFPVLMAGLHYTNVQLSFGA 263
F+ +IR M+ + P F GG WF +LT I P+L A V+ +
Sbjct: 240 FISFFFAIRNMA-EKVPSFKTGGTLWFTDLTTTDTTY---ILPLLTAVTFLIMVESNMQE 295
Query: 264 SSLGKENGLLGLLAKYYKSYLNLMTLPLFFLGYYIPQGSLVYWVTNSSFSIVQQLALKHP 323
G N + G + K+ + + +++P+ I + YW+T++ F++V L L+ P
Sbjct: 296 GLEG--NPVAGTMKKFSR-IIAFLSIPVLI---GIEKALFCYWLTSNLFTLVYGLTLRRP 349
Query: 324 ASRTMLGLPDKVVPAAARK 342
R +L LPD VV ++ R+
Sbjct: 350 DVRKLLNLPD-VVNSSTRQ 367
>sp|O43092|OXA12_SCHPO Mitochondrial inner membrane protein oxa1-2 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=oxa102 PE=2 SV=2
Length = 409
Score = 73.9 bits (180), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 71/284 (25%), Positives = 128/284 (45%), Gaps = 52/284 (18%)
Query: 88 SERVI--------ESIAGEESSLPVRALISFLDTYHDFTGFPWWTIIVSSTVALRIALLP 139
SE+V+ S+ S LP L + L+T H ++G PWW I + VA+RIA+ P
Sbjct: 73 SEKVVYTPSLPLSSSVLASFSFLPHNILQNGLNTLHIWSGLPWWASIAACAVAMRIAVFP 132
Query: 140 LIVLQLKKIQRIAELLPRLPPPFPPPLSGKRFVDQISLFRREKRAAGCPSLLW------- 192
+++ +K ++A + P++ + +S+ + K A G L+
Sbjct: 133 IMLKMMKTSAKLAIINPKV-------------AEHMSVLSKAK-AEGNSELMMQATTQIQ 178
Query: 193 ------------FIASFAIQVPCFLVGVTSIRRMSLDGHPGFDCGGIWWFQNLTEYPHGV 240
+++ Q F+ +++ M+ GF GG WW +L++ P +
Sbjct: 179 NLYKVNNVNPLNLLSAPVFQGILFISFFYALKTMAGVPVEGFTDGGFWWVNDLSQ-PDPL 237
Query: 241 LGSIFPVLMAGLHYTNVQLSFGASSLGKENGLLGLLAKYYKSYLNLMTLPLFFLGYYIPQ 300
IFPV L N++L G+ + + + + K+++ +L L + PLF + + P
Sbjct: 238 --HIFPVANGLLMLLNIEL--GSETGSNKVAMSPSMKKFFR-FLCLAS-PLFTMNF--PM 289
Query: 301 GSLVYWVTNSSFSIVQQLALKHPASRTMLGLPDKVVPAAARKPE 344
+YW ++ FS+ Q L+ R LGLP+ VP+A P
Sbjct: 290 AIFMYWFPSNVFSVFQGAFLRSSTIRHKLGLPE--VPSAMPVPN 331
>sp|O13375|OXA1_SACSE Mitochondrial inner membrane protein OXA1 OS=Saccharomyces
servazzii GN=OXA1 PE=3 SV=1
Length = 371
Score = 60.8 bits (146), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 54/230 (23%), Positives = 102/230 (44%), Gaps = 20/230 (8%)
Query: 111 LDTYHDFTGFPWWTIIVSSTVALRIALLPLIVLQLKKIQRIAELLPRLPPPFPPPLSGKR 170
L+ H +TG PWW I + T+ +R+ + P+ V I + + + P++ ++
Sbjct: 93 LEYVHVYTGLPWWGTICTVTILVRLLMFPIYVKSSDTIAKNSRIKPQMDKVTKELMATTD 152
Query: 171 FVD--QISLFRREKRAAGCPSLLWFIASFAIQVPCFLVGVTSIRRMSLDGHPGFDCGGIW 228
+ +I++ RR+ + W A +Q+P + ++R M+ GF GI
Sbjct: 153 LAEGQKIAVRRRKLLSENGIKNRWLAAPM-LQLPIAIGFFNALRSMANFPVDGFANQGIL 211
Query: 229 WFQNLTEYPHGVLGSIFPVLMAGLHYTNVQLSFGASSLGKENG---LLGLLAKYYKSYLN 285
WF +LT P L GL + + S LG E G G + +++ L
Sbjct: 212 WFHDLTLSD--------PYL--GLQFITAAVLMSFSRLGGETGAQQFSGPMKRFF-IILP 260
Query: 286 LMTLPLFFLGYYIPQGSLVYWVTNSSFSIVQQLALKHPASRTMLGLPDKV 335
L+++P + ++Y+ N +FS++Q L L++ R L + + V
Sbjct: 261 LVSIP---ATMNLSTSVVLYFAINGTFSVLQTLVLRNKWFRKKLNIAEVV 307
>sp|P39952|OXA1_YEAST Mitochondrial inner membrane protein OXA1 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=OXA1 PE=1
SV=1
Length = 402
Score = 57.8 bits (138), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 58/243 (23%), Positives = 103/243 (42%), Gaps = 23/243 (9%)
Query: 111 LDTYHDFTGFPWWTIIVSSTVALRIALLPLIVLQLKKIQRIAELLPRLPPPFPPPLSGKR 170
L+ H ++G PWW I ++T+ +R + PL V + R + + P L +S
Sbjct: 117 LEAVHVYSGLPWWGTIAATTILIRCLMFPLYVKSSDTVARNSHIKPELDALNNKLMSTTD 176
Query: 171 FVD-QISLFRREKRAAGCPSLLWFIASFAIQVPCFLVGVTSIRRMSLDGHPGFDCGGIWW 229
Q+ +R+K + ++A+ +Q+P L ++R M+ GF G+ W
Sbjct: 177 LQQGQLVAMQRKKLLSSHGIKNRWLAAPMLQIPIALGFFNALRHMANYPVDGFANQGVAW 236
Query: 230 FQNLTEYPHGVLGSIFPVLMAGLHYTNVQLSFGASSLGKENGLLGLLAKYYKSYLN--LM 287
F +LT+ P L GL + + LG E G A+ + S +
Sbjct: 237 FTDLTQAD--------PYL--GLQVITAAVFISFTRLGGETG-----AQQFSSPMKRLFT 281
Query: 288 TLPLFFLGYYIPQGSLV--YWVTNSSFSIVQQLALKHPASRTMLGLPDKV---VPAAARK 342
LP+ + + S V Y+ N +FS++Q + L++ R+ L + + P A
Sbjct: 282 ILPIISIPATMNLSSAVVLYFAFNGAFSVLQTMILRNKWVRSKLKITEVAKPRTPIAGAS 341
Query: 343 PEE 345
P E
Sbjct: 342 PTE 344
>sp|Q8VC74|COX18_MOUSE Mitochondrial inner membrane protein COX18 OS=Mus musculus GN=Cox18
PE=2 SV=5
Length = 331
Score = 50.4 bits (119), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 62/270 (22%), Positives = 108/270 (40%), Gaps = 58/270 (21%)
Query: 100 SSLPVRALISFLDTYHDFTGFPWWTIIVSSTVALRIAL-LPLIVLQLKKIQRIAELLPRL 158
+S PVR L + TG PWW+ I+ STVALR A+ LPL Q + ++ L P +
Sbjct: 57 ASAPVRTAEEVLLGAQEATGLPWWSNIILSTVALRGAVTLPLAAYQHYILAKVENLQPEI 116
Query: 159 PPPFPPPLSGKRFVDQISLFRRE----KRAA-------------------GC-----PSL 190
KR ++++ R+ KR A C L
Sbjct: 117 KD------IAKRLNQEVAVCARQFGWSKRVARLTYLKNMRRLISELYVRDNCHPFKATVL 170
Query: 191 LWFIASFAIQVPCFLVGVTSIRRMSL-----DG---HPGFDCGGIWWFQNLTEYPHGVLG 242
+W +Q+P ++ ++R +S DG GG WF +LT
Sbjct: 171 VW------VQLPMWVFISVALRNLSTGATHSDGISVQEQLAAGGTLWFPDLTAVDS---T 221
Query: 243 SIFPVLMAGLHYTNVQLSFGASSLGKENGLLGLLAKYYKSYLNLMTLPLFFLGYYIPQGS 302
I PV + ++ V++ F +G Y +++ +++ + + +P
Sbjct: 222 WILPVSVGVVNLLIVEI-FALQKIGTSR-----FQMYVTNFVRAVSVLMIPVAATVPSAL 275
Query: 303 LVYWVTNSSFSIVQQLALKHPASRTMLGLP 332
++YW+ +S + Q L L+ P R + +P
Sbjct: 276 VLYWLCSSLMGLAQNLLLRSPGFRQLCRIP 305
>sp|Q8N8Q8|COX18_HUMAN Mitochondrial inner membrane protein COX18 OS=Homo sapiens GN=COX18
PE=2 SV=1
Length = 333
Score = 49.7 bits (117), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 62/260 (23%), Positives = 107/260 (41%), Gaps = 36/260 (13%)
Query: 100 SSLPVRALISFLDTYHDFTGFPWWTIIVSSTVALRIAL-LPLIVLQLKKIQRIAELLPRL 158
+S PVR L H TG PWW I+ STVALR A+ LPL Q + ++ L P +
Sbjct: 60 ASSPVRVAEEVLLGVHAATGLPWWGSILLSTVALRGAVTLPLAAYQHYILAKVENLQPEI 119
Query: 159 PPPFPPPLSGKRFV--DQISLFRREKRAAGCPSLLWFIASF---------------AIQV 201
L+ + V +Q+ +R+ R ++ I+ IQ+
Sbjct: 120 -KTIARHLNQEVAVRANQLGWSKRDARLTYLKNMRRLISELYVRDNCHPFKATVLVWIQL 178
Query: 202 PCFLVGVTSIRRMSLDG--HPGFDC------GGIWWFQNLTEYPHGVLGSIFPVLMAGLH 253
P ++ ++R +S GF GGI WF +LT P I P+ + ++
Sbjct: 179 PMWIFMSFALRNLSTGAAHSEGFSVQEQLATGGILWFPDLTA-PDSTW--ILPISVGVIN 235
Query: 254 YTNVQLSFGASSLGKENGLLGLLAKYYKSYLNLMTLPLFFLGYYIPQGSLVYWVTNSSFS 313
V++ +G Y ++ M++ + + +P ++YW+ +S
Sbjct: 236 LLIVEIC-ALQKIGMSR-----FQTYITYFVRAMSVLMIPIAATVPSSIVLYWLCSSFVG 289
Query: 314 IVQQLALKHPASRTMLGLPD 333
+ Q L L+ P R + +P
Sbjct: 290 LSQNLLLRSPGFRQLCRIPS 309
>sp|Q5XDY9|YIDC1_STRP6 Membrane protein insertase YidC 1 OS=Streptococcus pyogenes
serotype M6 (strain ATCC BAA-946 / MGAS10394) GN=yidC1
PE=3 SV=1
Length = 275
Score = 48.9 bits (115), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 52/204 (25%), Positives = 94/204 (46%), Gaps = 29/204 (14%)
Query: 126 IVSSTVALRIALLPLIVLQLKKIQRIAELLPRLPPPFPPPLSGKRFVDQISLFRRE---- 181
I+ T+ +R+ L+PL +Q+K Q++ ++ P L +GK ++ L
Sbjct: 63 IILFTLTIRLMLMPLFNMQIKSSQKMQDIQPELRE-LQKKYAGKDTQTRMKLAEESQALY 121
Query: 182 KRAAGCP--SLLWFIASFAIQVPCFLVGVTSIRRMSLDGHPGFDCGGIWWFQNLTEYPHG 239
K+ P SLL IQ+P + ++ R+S G W + L ++ H
Sbjct: 122 KKYGVNPYASLL----PLLIQMPVMIALFQALTRVSF-----LKTGTFLWVE-LAQHDHL 171
Query: 240 VLGSIFPVLMAGLHYTNVQLSFGASSLGKENGLLGLLAKYYKSYLNLMTLPLFFLGYYIP 299
L PVL A + + L+ A+ KE ++ + Y +M L +FF+G+ +
Sbjct: 172 YL---LPVLAAVFTFLSTWLTNLAT---KEKNVMMTVMIY------VMPLMIFFMGFNLA 219
Query: 300 QGSLVYWVTNSSFSIVQQLALKHP 323
G ++YW +++F +VQ L L +P
Sbjct: 220 SGVVLYWTVSNAFQVVQLLLLNNP 243
>sp|Q8P2P8|YIDC1_STRP8 Membrane protein insertase YidC 1 OS=Streptococcus pyogenes
serotype M18 (strain MGAS8232) GN=yidC1 PE=3 SV=1
Length = 275
Score = 48.9 bits (115), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 52/204 (25%), Positives = 94/204 (46%), Gaps = 29/204 (14%)
Query: 126 IVSSTVALRIALLPLIVLQLKKIQRIAELLPRLPPPFPPPLSGKRFVDQISLFRRE---- 181
I+ T+ +R+ L+PL +Q+K Q++ ++ P L +GK ++ L
Sbjct: 63 IILFTLTIRLMLMPLFNMQIKSSQKMQDIQPELRE-LQKKYAGKDTQTRMKLAEESQALY 121
Query: 182 KRAAGCP--SLLWFIASFAIQVPCFLVGVTSIRRMSLDGHPGFDCGGIWWFQNLTEYPHG 239
K+ P SLL IQ+P + ++ R+S G W + L ++ H
Sbjct: 122 KKYGVNPYASLL----PLLIQMPVMIALFQALTRVSF-----LKTGTFLWVE-LAQHDHL 171
Query: 240 VLGSIFPVLMAGLHYTNVQLSFGASSLGKENGLLGLLAKYYKSYLNLMTLPLFFLGYYIP 299
L PVL A + + L+ A+ KE ++ + Y +M L +FF+G+ +
Sbjct: 172 YL---LPVLAAVFTFLSTWLTNLAA---KEKNVMMTVMIY------VMPLMIFFMGFNLA 219
Query: 300 QGSLVYWVTNSSFSIVQQLALKHP 323
G ++YW +++F +VQ L L +P
Sbjct: 220 SGVVLYWTVSNAFQVVQLLLLNNP 243
>sp|P0DC87|YIDC1_STRPQ Membrane protein insertase YidC 1 OS=Streptococcus pyogenes
serotype M3 (strain SSI-1) GN=yidC1 PE=3 SV=1
Length = 275
Score = 48.1 bits (113), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 52/204 (25%), Positives = 94/204 (46%), Gaps = 29/204 (14%)
Query: 126 IVSSTVALRIALLPLIVLQLKKIQRIAELLPRLPPPFPPPLSGKRFVDQISLFRRE---- 181
I+ T+ +R+ L+PL +Q+K Q++ ++ P L +GK ++ L
Sbjct: 63 IILFTLTIRLMLMPLFNMQIKSSQKMQDIQPELRE-LQRKYAGKDTQTRMKLAEESQALY 121
Query: 182 KRAAGCP--SLLWFIASFAIQVPCFLVGVTSIRRMSLDGHPGFDCGGIWWFQNLTEYPHG 239
K+ P SLL IQ+P + ++ R+S G W + L ++ H
Sbjct: 122 KKYGVNPYASLL----PLLIQMPVMIALFQALTRVSF-----LKTGTFLWVE-LAQHDHL 171
Query: 240 VLGSIFPVLMAGLHYTNVQLSFGASSLGKENGLLGLLAKYYKSYLNLMTLPLFFLGYYIP 299
L PVL A + + L+ A+ KE ++ + Y +M L +FF+G+ +
Sbjct: 172 YL---LPVLAAVFTFLSTWLTNLAA---KEKNVMMTVMIY------VMPLMIFFMGFNLA 219
Query: 300 QGSLVYWVTNSSFSIVQQLALKHP 323
G ++YW +++F +VQ L L +P
Sbjct: 220 SGVVLYWTVSNAFQVVQLLLLNNP 243
>sp|P0DC86|YIDC1_STRP3 Membrane protein insertase YidC 1 OS=Streptococcus pyogenes
serotype M3 (strain ATCC BAA-595 / MGAS315) GN=yidC1
PE=3 SV=1
Length = 275
Score = 48.1 bits (113), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 52/204 (25%), Positives = 94/204 (46%), Gaps = 29/204 (14%)
Query: 126 IVSSTVALRIALLPLIVLQLKKIQRIAELLPRLPPPFPPPLSGKRFVDQISLFRRE---- 181
I+ T+ +R+ L+PL +Q+K Q++ ++ P L +GK ++ L
Sbjct: 63 IILFTLTIRLMLMPLFNMQIKSSQKMQDIQPELRE-LQRKYAGKDTQTRMKLAEESQALY 121
Query: 182 KRAAGCP--SLLWFIASFAIQVPCFLVGVTSIRRMSLDGHPGFDCGGIWWFQNLTEYPHG 239
K+ P SLL IQ+P + ++ R+S G W + L ++ H
Sbjct: 122 KKYGVNPYASLL----PLLIQMPVMIALFQALTRVSF-----LKTGTFLWVE-LAQHDHL 171
Query: 240 VLGSIFPVLMAGLHYTNVQLSFGASSLGKENGLLGLLAKYYKSYLNLMTLPLFFLGYYIP 299
L PVL A + + L+ A+ KE ++ + Y +M L +FF+G+ +
Sbjct: 172 YL---LPVLAAVFTFLSTWLTNLAA---KEKNVMMTVMIY------VMPLMIFFMGFNLA 219
Query: 300 QGSLVYWVTNSSFSIVQQLALKHP 323
G ++YW +++F +VQ L L +P
Sbjct: 220 SGVVLYWTVSNAFQVVQLLLLNNP 243
>sp|P65631|YIDC1_STRP1 Membrane protein insertase YidC 1 OS=Streptococcus pyogenes
serotype M1 GN=yidC1 PE=3 SV=1
Length = 275
Score = 48.1 bits (113), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 52/204 (25%), Positives = 94/204 (46%), Gaps = 29/204 (14%)
Query: 126 IVSSTVALRIALLPLIVLQLKKIQRIAELLPRLPPPFPPPLSGKRFVDQISLFRRE---- 181
I+ T+ +R+ L+PL +Q+K Q++ ++ P L +GK ++ L
Sbjct: 63 IILFTLTIRLMLMPLFNMQIKSSQKMQDIQPELRE-LQRKYAGKDTQTRMKLAEESQALY 121
Query: 182 KRAAGCP--SLLWFIASFAIQVPCFLVGVTSIRRMSLDGHPGFDCGGIWWFQNLTEYPHG 239
K+ P SLL IQ+P + ++ R+S G W + L ++ H
Sbjct: 122 KKYGVNPYASLL----PLLIQMPVMIALFQALTRVSF-----LKTGTFLWVE-LAQHDHL 171
Query: 240 VLGSIFPVLMAGLHYTNVQLSFGASSLGKENGLLGLLAKYYKSYLNLMTLPLFFLGYYIP 299
L PVL A + + L+ A+ KE ++ + Y +M L +FF+G+ +
Sbjct: 172 YL---LPVLAAVFTFLSTWLTNLAA---KEKNVMMTVMIY------VMPLMIFFMGFNLA 219
Query: 300 QGSLVYWVTNSSFSIVQQLALKHP 323
G ++YW +++F +VQ L L +P
Sbjct: 220 SGVVLYWTVSNAFQVVQLLLLNNP 243
>sp|Q5R7D0|COX18_PONAB Mitochondrial inner membrane protein COX18 OS=Pongo abelii GN=COX18
PE=2 SV=1
Length = 334
Score = 47.0 bits (110), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 62/261 (23%), Positives = 106/261 (40%), Gaps = 37/261 (14%)
Query: 100 SSLPVRALISFLDTYHDFTGFPWWTIIVSSTVALRIAL-LPLIVLQLKKIQRIAELLPRL 158
+S PVR L H TG PWW I ST ALR A+ LPL Q + ++ L P +
Sbjct: 60 ASSPVRVAEEVLLGVHAATGLPWWGSIPLSTAALRGAVTLPLAAYQHYILAKVENLQPEI 119
Query: 159 PPPFPPPLSGKRFV--DQISLFRREKRAAGCPSLLWFIASF---------------AIQV 201
L+ + V +Q+ +R+ R ++ I+ IQ+
Sbjct: 120 KT-IARHLNQEVAVRANQLGWSKRDARLTYLKNMRRLISELYVRDNCHPFKATVLVWIQL 178
Query: 202 PCFLVGVTSIRRMSLDG---HPGFD------CGGIWWFQNLTEYPHGVLGSIFPVLMAGL 252
P ++ ++R +S GF GGI WF +LT P I PV + +
Sbjct: 179 PMWIFMSFALRNLSTGAAHSEAGFSVEEQLAAGGILWFSDLTA-PDPTW--ILPVSLGVI 235
Query: 253 HYTNVQLSFGASSLGKENGLLGLLAKYYKSYLNLMTLPLFFLGYYIPQGSLVYWVTNSSF 312
+ V++ +G + Y ++ M++ + + +P ++YW+ +S
Sbjct: 236 NLLIVEICV-LQKIG-----MSRFQTYITYFVRAMSVLMIPIAATVPSSIVLYWLCSSFV 289
Query: 313 SIVQQLALKHPASRTMLGLPD 333
+ Q L L+ P R + +P
Sbjct: 290 GLSQNLLLRSPGFRQLCRIPS 310
>sp|A4T0N2|YIDC_POLSQ Membrane protein insertase YidC OS=Polynucleobacter necessarius
subsp. asymbioticus (strain DSM 18221 / CIP 109841 /
QLW-P1DMWA-1) GN=yidC PE=3 SV=1
Length = 557
Score = 45.4 bits (106), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 62/245 (25%), Positives = 112/245 (45%), Gaps = 47/245 (19%)
Query: 89 ERVIESIA-GEES-------SLPVRALISFLDTYHDFTGFPWWTIIVSSTVALRIALLPL 140
ER++E+IA G E ++ + + L+ H+ G W+II+ TV +++A PL
Sbjct: 331 ERMLETIAPGLELLKDYGYLTILAKPIFWLLEHIHNIVGNWGWSIILL-TVLIKLAFFPL 389
Query: 141 IVLQLKKIQRIAELLPRLPPPFPPPLSGKRFVDQ--ISLFRREKRA--AGCPSLLWFIAS 196
K + R+ E+ PRL + ++Q + ++R+EK GC ++
Sbjct: 390 SAASYKSMARMKEVQPRLAAMKEQYKGEPQKLNQAMMEMYRKEKINPLGGCLPVV----- 444
Query: 197 FAIQVPCFL-VGVTSIRRMSLDGHPGFDCGGIWWFQNLT-EYPHGVLGSIFPVLMAGLHY 254
IQ+P F+ + + + + G P I W +L+ P+ +L PV+MA +
Sbjct: 445 --IQIPVFISLYWVLLSSVEMRGAP-----WILWIHDLSVPDPYYIL----PVVMAVSMF 493
Query: 255 TNVQLSFGASSLGKENGLLGLLAKYYKSYLNLMTLPLFF--LGYYIPQGSLVYWVTNSSF 312
+L+ + AK +M +P+ F + ++ P G ++YWVTN+
Sbjct: 494 VQTKLNPTPPD--------PVQAKV------MMYMPIVFSIMFFFFPAGLVLYWVTNNLL 539
Query: 313 SIVQQ 317
SI QQ
Sbjct: 540 SIAQQ 544
>sp|B2U820|YIDC_RALPJ Membrane protein insertase YidC OS=Ralstonia pickettii (strain 12J)
GN=yidC PE=3 SV=1
Length = 554
Score = 45.4 bits (106), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 60/246 (24%), Positives = 107/246 (43%), Gaps = 44/246 (17%)
Query: 101 SLPVRALISFLDTYHDFTGFPWWTIIVSSTVALRIALLPLIVLQLKKIQRIAELLPRLPP 160
++ + L L+ H G W+I V+ TV +++ PL + + ++ +L PR+
Sbjct: 344 TIVAKPLFWLLEKIHALLGNWGWSI-VALTVLIKLVFFPLSATSYRSMAKMKDLQPRMTA 402
Query: 161 PFPPPLSGKRFVDQ--ISLFRREKRA--AGCPSLLWFIASFAIQVPCFLVGVTS-IRRMS 215
+ ++Q ++L+R EK GC ++ IQ+P F+ + + +
Sbjct: 403 IRERHKGDPQKMNQEMMTLYRTEKVNPLGGCLPIV-------IQIPVFMALYWALLSSVE 455
Query: 216 LDGHPGFDCGGIWWFQNL-TEYPHGVLGSIFPVLMAGLHYTNVQLSFGASSLGKENGLLG 274
+ G P I W +L T P +L PVLMA + +L+
Sbjct: 456 MRGAP-----WIGWVHDLSTPDPFYIL----PVLMAVSMFVQTKLNPTPPD--------P 498
Query: 275 LLAKYYKSYLNLMTLPLFF--LGYYIPQGSLVYWVTNSSFSIVQQLALKHPASRTMLGLP 332
+ AK +M +P+ F + ++ P G ++YWV N+ SI QQ ++ MLG
Sbjct: 499 VQAKV------MMFMPIAFSVMFFFFPAGLVLYWVVNNCLSIAQQWSINR-----MLGTN 547
Query: 333 DKVVPA 338
+K PA
Sbjct: 548 NKAAPA 553
>sp|Q9CJ72|YIDC1_LACLA Membrane protein insertase YidC 1 OS=Lactococcus lactis subsp.
lactis (strain IL1403) GN=yidC1 PE=3 SV=1
Length = 269
Score = 45.1 bits (105), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/206 (22%), Positives = 89/206 (43%), Gaps = 33/206 (16%)
Query: 126 IVSSTVALRIALLPLIVLQLKKIQRIAELLP---RLPPPFPPP-LSGKRFVD-QISLFRR 180
I+ T+ +R ALLPL+ +Q+K QR+ E+ P ++ +P + +R ++ +I
Sbjct: 58 IILFTIVIRAALLPLMNIQIKSSQRMQEIQPEIKKIQAKYPSKDMESRRLMNEEIQKLYA 117
Query: 181 EKRA---AGCPSLLWFIASFAIQVPCFLVGVTSIRRMSLDGHPGFDCGGIWWFQNLTEYP 237
E + GC L+ +Q+P ++ R+ H G WF+ + P
Sbjct: 118 ENKVNPYMGCLPLV-------VQMPVLWALYQALSRVDFLKH-----GTFLWFEIGAKDP 165
Query: 238 HGVLGSIFPVLMAGLHYTNVQLSFGASSLGKENGLLGLLAKYYKSYLNLMTLPLFFLGYY 297
+L P+L A + + L S + N + S +M + + +G
Sbjct: 166 TFIL----PILAAVFTFLSSYLMM--KSAPERNAMT-------TSMTYIMPIFILIMGVN 212
Query: 298 IPQGSLVYWVTNSSFSIVQQLALKHP 323
G +YWV +++F + Q + L +P
Sbjct: 213 FAAGIALYWVISNAFQVFQTMLLANP 238
>sp|B5RLZ9|YIDC_BORDL Membrane protein insertase YidC OS=Borrelia duttonii (strain Ly)
GN=yidC PE=3 SV=1
Length = 545
Score = 43.5 bits (101), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 53/220 (24%), Positives = 89/220 (40%), Gaps = 36/220 (16%)
Query: 122 WWTIIVSSTVALRIALLPLIVLQLKKIQRIAELLPRLPPPFPPPLSG-KRFVDQISLFRR 180
W I+ T+ +RI + PL + +++L P++ S KR +++S R
Sbjct: 341 WGLSIMFLTIVVRILIFPLTFKSFRATAELSKLQPKMKEIQVKFKSDPKRLNEEMSKLYR 400
Query: 181 EKRA---AGCPSLLWFIASFAIQVPCFLVGVTSIRRMSLDGHPGFDCGGIWWFQNLT--- 234
E+ GC +L +Q+P F + + F G W +L+
Sbjct: 401 EEGVNPIGGCFPIL-------LQLPVFFALYGLVNNFFVLRGASFIPG---WIDDLSIGD 450
Query: 235 ---EYPHGVLG----SIFPVLM--AGLHYTNVQLSFGASSLGKENGLLGLLAKYYKSYLN 285
+ + V I P +M L T V + SLG + L Y+
Sbjct: 451 SIYYFGYKVFAWTDIRILPFIMMITQLLSTIVSSNVSFKSLGAQQKFL-----YFG---- 501
Query: 286 LMTLPLFFLGYYIPQGSLVYWVTNSSFSIVQQLALKHPAS 325
M + FF+ Y +P G L+YW+T + F+I+QQ +K S
Sbjct: 502 -MPIMFFFILYDMPSGLLIYWITTNIFTILQQYYIKMNLS 540
>sp|O25989|YIDC_HELPY Membrane protein insertase YidC OS=Helicobacter pylori (strain ATCC
700392 / 26695) GN=yidC PE=3 SV=1
Length = 547
Score = 43.1 bits (100), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 55/219 (25%), Positives = 92/219 (42%), Gaps = 28/219 (12%)
Query: 105 RALISFLDTYHDFTGFPWWTIIVSSTVALRIALLPLIVLQLKKIQRIAELLPRLPPPFPP 164
+ + LD + F G W II+ T+ +RI L PL + +Q++ EL P++
Sbjct: 336 KGVFVLLDYLYQFVGNWGWAIILL-TIIVRIILYPLSYKGMVSMQKLKELAPKMKE-LQE 393
Query: 165 PLSGKRFVDQISLFRREKRAAGCPSLLWFIASFAIQVPCFLVGVTSIRRMSLDGHPGFDC 224
G+ Q + + K+ P L +Q+P F +I R+ +
Sbjct: 394 KYKGEPQKLQAHMMQLYKKHGANP--LGGCLPLILQIPVFF----AIYRVLYNAVELKSS 447
Query: 225 GGIWWFQNLTEY-PHGVLGSIFPVLMAGLHYTNVQLSFGASSLGKENGLLGLLAKYYKSY 283
I W +L+ P+ +L P+LM Y + S+ + AK +K
Sbjct: 448 EWILWIHDLSIMDPYFIL----PLLMGASMYWH-------QSVTPNTMTDPMQAKIFK-- 494
Query: 284 LNLMTLPLFFLGYYI--PQGSLVYWVTNSSFSIVQQLAL 320
LPL F + I P G ++YW TN+ S++QQL +
Sbjct: 495 ----LLPLLFTIFLITFPAGLVLYWTTNNILSVLQQLII 529
>sp|B2S0E5|YIDC_BORHD Membrane protein insertase YidC OS=Borrelia hermsii (strain DAH)
GN=yidC PE=3 SV=1
Length = 545
Score = 42.7 bits (99), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 51/220 (23%), Positives = 88/220 (40%), Gaps = 36/220 (16%)
Query: 122 WWTIIVSSTVALRIALLPLIVLQLKKIQRIAELLPRLPP-PFPPPLSGKRFVDQISLFRR 180
W I+ T+ +RI + PL + +++L P++ KR +++ R
Sbjct: 341 WGLSIMFLTIVVRILIFPLTFKSFRATAELSKLQPKMKEIQVKFKNDPKRLNEEMGKLYR 400
Query: 181 EKRA---AGCPSLLWFIASFAIQVPCFLVGVTSIRRMSLDGHPGFDCGGIWWFQNLT--- 234
E+ GC +L +Q+P F + L F G W +L+
Sbjct: 401 EEGVNPLGGCFPIL-------LQLPVFFALYGLVNNFFLLRGASFIPG---WIDDLSIGD 450
Query: 235 ---EYPHGVLG----SIFPVLMAGLHYTNVQLSFGAS--SLGKENGLLGLLAKYYKSYLN 285
+ + V I P +M + +S S SLG + +L Y+
Sbjct: 451 SIYYFGYKVFMWTDIRILPFIMMVTQLISTIISSNVSFKSLGSQQKIL-----YFG---- 501
Query: 286 LMTLPLFFLGYYIPQGSLVYWVTNSSFSIVQQLALKHPAS 325
M + FF+ Y +P G L+YW+T + F+I+QQ +K S
Sbjct: 502 -MPIMFFFILYDMPSGLLIYWITTNIFTILQQYYIKMNVS 540
>sp|Q82YV1|YIDC_ENTFA Membrane protein insertase YidC OS=Enterococcus faecalis (strain
ATCC 700802 / V583) GN=yidC PE=3 SV=1
Length = 275
Score = 42.4 bits (98), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 54/208 (25%), Positives = 87/208 (41%), Gaps = 37/208 (17%)
Query: 126 IVSSTVALRIALLPLIVLQLKKIQRIAELLPRLPPPFPPPLSGKRFVDQISLFRREKRA- 184
I+ T+ +RI LLPL+ Q K +++ EL P+L S K Q LFR E++
Sbjct: 61 IILFTLVIRIILLPLMHFQTKSMRKTQELQPQL-KALQQKYSSKDPETQ-RLFREEQQRL 118
Query: 185 ---------AGCPSLLWFIASFAIQVPCFLVGVTSIRRMSLDGHPGFDCGGIWWFQNLTE 235
GC LL +Q+P + +I R+ P G W
Sbjct: 119 YAENNVNPYIGCLPLL-------VQLPIMMALYQAISRV-----PELKEGTFLWLSLDKP 166
Query: 236 YPHGVLGSIFPVLMAGLHYTNVQLSFGASSLGKENGLLGLLAKYYKSYLNLMTLPLFFLG 295
P+ +L P+L A + + LS + S + N L ++ +M +FF+G
Sbjct: 167 DPYLIL----PILAAVFTFASTYLS--SMSQLETNASLKIMN-------YVMPAMIFFMG 213
Query: 296 YYIPQGSLVYWVTNSSFSIVQQLALKHP 323
+ +YWV +++F Q L L +P
Sbjct: 214 ISLASSLSLYWVVSNAFQTGQTLLLNNP 241
>sp|O94587|COX18_SCHPO Mitochondrial inner membrane protein cox18 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=cox18 PE=3 SV=1
Length = 202
Score = 42.4 bits (98), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 52/210 (24%), Positives = 93/210 (44%), Gaps = 32/210 (15%)
Query: 121 PWWTIIVSSTVALRIAL-LPLIVLQLKKIQRIAELLPRLPPPFPPPLSGKRFVDQISLFR 179
PW I + + LR + LP+ + LK +R ++ P + K+ + FR
Sbjct: 13 PWCYEIPAMAIFLRSTITLPIAIASLKTARRFVQVQPLIK-------EAKKRCRTNTDFR 65
Query: 180 --REK--RAAGCPSLLWFIASFAIQVPCFLVGVTSIRRMSLDGHP-GFDCGGIWWFQNLT 234
R+K + C L+ + Q+P F +R+ ++D P G+ WF +LT
Sbjct: 66 TVRKKLYKRFNCHPLMIYALPIT-QLPLFAFASYQLRQ-AVDVCPESMSTEGMLWFTDLT 123
Query: 235 -EYPHGVLGSIFPVLMAGLHYTNVQL--SFGASSLGKENGLLGLLAKYYKSYLNLMTLPL 291
PHGVL P ++A + TN+ + S L K G+++ ++ S
Sbjct: 124 LPDPHGVL----PAVLAVTYLTNMSILKRPSDSRLLKIFNTAGIMSAFFVS--------- 170
Query: 292 FFLGYYIPQGSLVYWVTNSSFSIVQQLALK 321
F+ + +YW T++ +S+VQ +AL+
Sbjct: 171 -FMAFKTSTALSLYWTTSAIYSLVQNVALR 199
>sp|A1QZM8|YIDC_BORT9 Membrane protein insertase YidC OS=Borrelia turicatae (strain
91E135) GN=yidC PE=3 SV=1
Length = 545
Score = 42.4 bits (98), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 50/220 (22%), Positives = 87/220 (39%), Gaps = 36/220 (16%)
Query: 122 WWTIIVSSTVALRIALLPLIVLQLKKIQRIAELLPRLPP-PFPPPLSGKRFVDQISLFRR 180
W I+ T+ +RI + PL + +++L P++ KR +++ R
Sbjct: 341 WGLSIIFLTIVVRILIFPLTFKSFRATAELSKLQPKMKEIQVKFKNDPKRLNEEMGKLYR 400
Query: 181 EKRA---AGCPSLLWFIASFAIQVPCFLVGVTSIRRMSLDGHPGFDCGGIWWFQNLT--- 234
E+ GC +L +Q+P F + L F G W +L+
Sbjct: 401 EEGVNPLGGCLPIL-------LQLPVFFALYGLVNNFFLLRGASFIPG---WIDDLSIGD 450
Query: 235 -----EYPHGVLGSI----FPVLMAGLHYTNVQLSFGASSLGKENGLLGLLAKYYKSYLN 285
Y V I F +++ L T + + +LG + L Y+
Sbjct: 451 SIYYFGYKVFVWTDIRILPFIMMITQLLSTIISSNVSFKNLGSQQKFL-----YFG---- 501
Query: 286 LMTLPLFFLGYYIPQGSLVYWVTNSSFSIVQQLALKHPAS 325
M + FF+ Y +P G L+YW+T + F+I+QQ +K S
Sbjct: 502 -MPIMFFFILYDMPSGLLIYWITTNIFTILQQYYIKMNVS 540
>sp|B5RRP5|YIDC_BORRA Membrane protein insertase YidC OS=Borrelia recurrentis (strain A1)
GN=yidC PE=3 SV=1
Length = 545
Score = 42.0 bits (97), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 52/220 (23%), Positives = 88/220 (40%), Gaps = 36/220 (16%)
Query: 122 WWTIIVSSTVALRIALLPLIVLQLKKIQRIAELLPRLPPPFPPPLSG-KRFVDQISLFRR 180
W I+ T+ +RI + PL + +++L P++ S KR +++ R
Sbjct: 341 WGLSIMFLTIVVRILIFPLTFKSFRATAELSKLQPKMKEIQVKFKSDPKRLNEEMGKLYR 400
Query: 181 EKRA---AGCPSLLWFIASFAIQVPCFLVGVTSIRRMSLDGHPGFDCGGIWWFQNLT--- 234
E+ GC +L +Q+P F + + F G W +L+
Sbjct: 401 EEGVNPIGGCFPIL-------LQLPVFFALYGLVNNFFVLRGASFIPG---WIDDLSIGD 450
Query: 235 ---EYPHGVLG----SIFPVLM--AGLHYTNVQLSFGASSLGKENGLLGLLAKYYKSYLN 285
+ + V I P +M L T V + SLG + L Y+
Sbjct: 451 SIYYFGYKVFAWTDIRILPFIMMITQLLSTIVSSNVSFKSLGSQQKFL-----YFG---- 501
Query: 286 LMTLPLFFLGYYIPQGSLVYWVTNSSFSIVQQLALKHPAS 325
M + FF+ Y +P G L+YW+T + F+I+QQ +K S
Sbjct: 502 -MPIMFFFILYDMPSGLLIYWITTNIFTILQQYYIKMNLS 540
>sp|Q0A4L5|YIDC_ALHEH Membrane protein insertase YidC OS=Alkalilimnicola ehrlichei
(strain MLHE-1) GN=yidC PE=3 SV=1
Length = 562
Score = 42.0 bits (97), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 50/220 (22%), Positives = 92/220 (41%), Gaps = 37/220 (16%)
Query: 105 RALISFLDTYHDFTGFPWWTIIVSSTVALRIALLPLIVLQLKKIQRIAELLPRLPPPFPP 164
+ L LD D G W I+ T+ +++A L + + ++ + PR+
Sbjct: 344 KPLFWLLDNIQDIVG-NWGVAIILVTLLIKLAFYKLSATSYRSMAKMRRVQPRMQQLKER 402
Query: 165 PLSGKRFVDQ--ISLFRREKRA--AGCPSLLWFIASFAIQVPCFLVGVTSIRRMSLDGHP 220
K+ ++Q + L+++EK GC +L +Q+P F+ + H
Sbjct: 403 HGDDKQALNQAMMELYKKEKINPLGGCLPIL-------VQIPVFIALYWVLLESVELRHA 455
Query: 221 GFDCGGIWWFQNLTEY-PHGVLGSIFPVLMAGLHYTNVQLSFGASSLGKENGLLGLLAKY 279
F + W Q+L+ P+ VL P+LM + +Q + L +
Sbjct: 456 PF----MLWIQDLSSRDPYFVL----PLLMGATMF--LQQRLNPAPLDPIQQRI------ 499
Query: 280 YKSYLNLMTLPLFFLGYYI--PQGSLVYWVTNSSFSIVQQ 317
+M LP+ F G+++ P G ++YW+ N+ SI QQ
Sbjct: 500 ------MMALPIVFTGFFMLFPAGLVLYWLVNNGLSIAQQ 533
>sp|Q2KTI5|YIDC_BORA1 Membrane protein insertase YidC OS=Bordetella avium (strain 197N)
GN=yidC PE=3 SV=1
Length = 559
Score = 41.6 bits (96), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 51/230 (22%), Positives = 100/230 (43%), Gaps = 39/230 (16%)
Query: 105 RALISFLDTYHDFTGFPWWTIIVSSTVALRIALLPLIVLQLKKIQRIAELLPRLPPPFPP 164
+ L + + H G WTI V+ TV ++ PL + + R+ ++ PRL
Sbjct: 355 KPLFTLMTWLHSLLGNWGWTI-VALTVIIKAVFYPLASASYRSMARMKQVAPRLQALKEK 413
Query: 165 PLSGKRFVDQ--ISLFRREKRA--AGCPSLLWFIASFAIQVPCFL-VGVTSIRRMSLDGH 219
++ ++Q + ++R EK GC ++ +Q+P F+ + + + + G
Sbjct: 414 YGDDRQKLNQAMMEMYRTEKINPLGGCLPMV-------VQIPVFIALYWVLLASVEMRGA 466
Query: 220 PGFDCGGIWWFQNLT-EYPHGVLGSIFPVLMAGLHYTNVQLSFGASSLGKENGLLGLLAK 278
P I W +L+ P+ +L P +M + ++L+ + AK
Sbjct: 467 PW-----ILWIHDLSVRDPYFIL----PAVMMATMFLQIKLNPTPPD--------PVQAK 509
Query: 279 YYKSYLNLMTLPLFFLG--YYIPQGSLVYWVTNSSFSIVQQLALKHPASR 326
+M +PL F G ++ P G ++YW N++ SI+QQ ++ +R
Sbjct: 510 V------MMVMPLVFGGMMFFFPAGLVLYWCVNNTLSILQQWSITRSITR 553
>sp|Q81XH4|YIDC1_BACAN Membrane protein insertase YidC 1 OS=Bacillus anthracis GN=yidC1
PE=3 SV=1
Length = 260
Score = 41.6 bits (96), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 51/239 (21%), Positives = 98/239 (41%), Gaps = 35/239 (14%)
Query: 103 PVRALISFLDTYHDFTGFPWWTIIVSSTVALRIALLPLIVLQLKKIQRIAELLPRLPPPF 162
P+ +I F+ H G + I+ T+ +R A++PL V Q + ++ ++ P L
Sbjct: 44 PISFMIQFVA--HHIPGASFGIAIIIMTLVIRSAMIPLAVSQYRSQAKMKKMQPELQKLK 101
Query: 163 PPPLSGKRFVDQISLFRREKRA----------AGCPSLLWFIASFAIQVPCFLVGVTSIR 212
+ +++ +++E AGC LL IQ+P F +I
Sbjct: 102 QKYGDVSKDLEKQKQYQKEMSELMKSGGWNPLAGCWPLL-------IQMPIFSALYYAIS 154
Query: 213 RMSLDGHPGFDCGGIWWFQNLTEYPHGVLGSIFPVLMAGLHYTNVQLSFGASSLGKENGL 272
R F +W H I P++ A + +++ S+ G++ +
Sbjct: 155 RTEEIRTSTF----LW-----VNLGHADPYHILPIIAALTTFIQMKVFQSNSTSGEQVQM 205
Query: 273 LGLLAKYYKSYLNLMTLPLFFLGYYIPQGSLVYWVTNSSFSIVQQLALKHPASRTMLGL 331
L K +M + F+G+ P G ++YW+T + F+++Q + L+ R L L
Sbjct: 206 L-------KMQQIMMPAMILFMGFAAPSGLVLYWITGNLFTMMQTIVLRKIMEREELQL 257
>sp|Q8P338|YIDC_XANCP Membrane protein insertase YidC OS=Xanthomonas campestris pv.
campestris (strain ATCC 33913 / NCPPB 528 / LMG 568)
GN=yidC PE=3 SV=1
Length = 573
Score = 41.6 bits (96), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 67/277 (24%), Positives = 107/277 (38%), Gaps = 62/277 (22%)
Query: 83 ETVNLSERVIESIAGEESSLPVRALISFLDTYHDFTGFPWWTIIVSSTVALRIALLPLIV 142
E V +RV++ ++ + L L H F W I+ V LR+AL PL
Sbjct: 341 EDVKGLDRVVDYSRFSIMAIIGQGLFWVLSHLHSFL-HNWGWAIIGLVVLLRLALYPLSA 399
Query: 143 LQLKKIQRIAELLPRLPPPFPPPLSGKRFVDQ--------ISLFRREK--RAAGCPSLLW 192
Q K ++ PRL +R+ D + LF++EK GC LL
Sbjct: 400 AQYKSGAKMRRFQPRLAQ------LKERYGDDRQKYQQATMELFKKEKINPMGGCLPLL- 452
Query: 193 FIASFAIQVPCF------LVGVTSIRRMSLDGHPGFDCGGIWWFQNLTEY-PHGVLGSIF 245
IQ+P F LV +R+ G W Q+LT P+ +L
Sbjct: 453 ------IQMPIFFALYWVLVESVELRQAPWLG----------WIQDLTARDPYFIL---- 492
Query: 246 PVLMAGLHYTNVQLSFGASSLGKENGLLGLLAKYYKSYLNLMTLPLFFLGYYIPQGSLVY 305
PVL N+ + + L G+ + AK + M L + ++P G ++Y
Sbjct: 493 PVL-------NIAIMWATQKLTPTPGMDPMQAK----MMQFMPLVFGVMMAFMPAGLVLY 541
Query: 306 WVTNSSFS-IVQQLALKHPASRTMLGLPDKVVPAAAR 341
WV N ++Q ++ + P K++ A A+
Sbjct: 542 WVVNGGLGLLIQWWMIRQHGEK-----PSKIIQANAK 573
>sp|Q4UNK8|YIDC_XANC8 Membrane protein insertase YidC OS=Xanthomonas campestris pv.
campestris (strain 8004) GN=yidC PE=3 SV=1
Length = 573
Score = 41.6 bits (96), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 67/277 (24%), Positives = 107/277 (38%), Gaps = 62/277 (22%)
Query: 83 ETVNLSERVIESIAGEESSLPVRALISFLDTYHDFTGFPWWTIIVSSTVALRIALLPLIV 142
E V +RV++ ++ + L L H F W I+ V LR+AL PL
Sbjct: 341 EDVKGLDRVVDYSRFSIMAIIGQGLFWVLSHLHSFL-HNWGWAIIGLVVLLRLALYPLSA 399
Query: 143 LQLKKIQRIAELLPRLPPPFPPPLSGKRFVDQ--------ISLFRREK--RAAGCPSLLW 192
Q K ++ PRL +R+ D + LF++EK GC LL
Sbjct: 400 AQYKSGAKMRRFQPRLAQ------LKERYGDDRQKYQQATMELFKKEKINPMGGCLPLL- 452
Query: 193 FIASFAIQVPCF------LVGVTSIRRMSLDGHPGFDCGGIWWFQNLTEY-PHGVLGSIF 245
IQ+P F LV +R+ G W Q+LT P+ +L
Sbjct: 453 ------IQMPIFFALYWVLVESVELRQAPWLG----------WIQDLTARDPYFIL---- 492
Query: 246 PVLMAGLHYTNVQLSFGASSLGKENGLLGLLAKYYKSYLNLMTLPLFFLGYYIPQGSLVY 305
PVL N+ + + L G+ + AK + M L + ++P G ++Y
Sbjct: 493 PVL-------NIAIMWATQKLTPTPGMDPMQAK----MMQFMPLVFGVMMAFMPAGLVLY 541
Query: 306 WVTNSSFS-IVQQLALKHPASRTMLGLPDKVVPAAAR 341
WV N ++Q ++ + P K++ A A+
Sbjct: 542 WVVNGGLGLLIQWWMIRQHGEK-----PSKIIQANAK 573
>sp|Q661H9|YIDC_BORGA Membrane protein insertase YidC OS=Borrelia garinii (strain PBi)
GN=yidC PE=3 SV=1
Length = 544
Score = 40.8 bits (94), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 53/217 (24%), Positives = 98/217 (45%), Gaps = 28/217 (12%)
Query: 122 WWTIIVSSTVALRIALLPLIVLQLKKIQRIAELLPRLPP-PFPPPLSGKRFVDQISLFRR 180
W I+ T+ +RI + PL + +++L P++ K+ +++ +
Sbjct: 343 WGLSIIFLTIVVRILIFPLTFKGFRATAELSKLQPKMKELQVKFKHDPKKLNEEMGRLYK 402
Query: 181 EKRA---AGC-PSLLW---FIASFAIQVPCFLVGVTS-----IRRMSLDGHPGFDCGGIW 228
E+ GC P +L F A +++ FL+ S I +S+ G ++ G
Sbjct: 403 EEGVNPLGGCFPVILQLPIFFALYSLVNNLFLLRGASFIPGWIDDLSI-GDSVYNFGYRL 461
Query: 229 WFQNLTEYPHGVLGSIFPVLMAGLHYTNVQLSFGASSLGKENGLLGLLAKYYKSYLNLMT 288
+F + T+ I P +M +T + + +S+L +N LG K+ Y M
Sbjct: 462 YFVSWTDI------RILPFIMM---FTQLGSTIVSSNLDLKN--LGAQQKFL--YFG-MP 507
Query: 289 LPLFFLGYYIPQGSLVYWVTNSSFSIVQQLALKHPAS 325
+ FF+ Y +P G L+YW+T + F+I+QQ +K S
Sbjct: 508 IMFFFILYNMPSGLLIYWITTNIFTILQQYYIKMHLS 544
>sp|B3PIU1|YIDC_CELJU Membrane protein insertase YidC OS=Cellvibrio japonicus (strain
Ueda107) GN=yidC PE=3 SV=1
Length = 552
Score = 40.8 bits (94), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 51/228 (22%), Positives = 93/228 (40%), Gaps = 35/228 (15%)
Query: 105 RALISFLDTYHDFTGFPWWTIIVSSTVALRIALLPLIVLQLKKIQRIAELLPRLPPPFPP 164
+ L +FL H F G W I+ T+++++ PL + + ++ +L P+L
Sbjct: 349 KPLFAFLKFIHGFLG-NWGLAIIGLTLSVKLLFFPLSAASYRSMAKMRKLQPKLLELKER 407
Query: 165 PLSGKRFVDQ--ISLFRREKRA--AGCPSLLWFIASFAIQVPCFL-VGVTSIRRMSLDGH 219
++ Q + L++ E+ GC LL IQ+P F+ + + + L
Sbjct: 408 YGEDRQKFSQEMMKLYKTEQVNPFGGCLPLL-------IQMPVFIALYWVLMESVELRHA 460
Query: 220 PGFDCGGIWWFQNLTEY-PHGVLGSIFPVLMAGLHYTNVQLSFGASSLGKENGLLGLLAK 278
P F W ++L+ P+ VL I+ M + N Q + +
Sbjct: 461 PFFG-----WIEDLSRMDPYFVLPIIYGATMWIMQKLNPQPTDPMQA------------- 502
Query: 279 YYKSYLNLMTLPLFFLGYYIPQGSLVYWVTNSSFSIVQQLALKHPASR 326
+N++ F+ + P G ++YWVTN+ SI QQ + R
Sbjct: 503 ---RIMNMLPFVFTFMFLWFPAGLVLYWVTNNLLSIAQQYVITRQIER 547
>sp|Q8PEH7|YIDC_XANAC Membrane protein insertase YidC OS=Xanthomonas axonopodis pv. citri
(strain 306) GN=yidC PE=3 SV=1
Length = 574
Score = 40.8 bits (94), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 67/280 (23%), Positives = 108/280 (38%), Gaps = 62/280 (22%)
Query: 80 IPVETVNLSERVIESIAGEESSLPVRALISFLDTYHDFTGFPWWTIIVSSTVALRIALLP 139
I E V +RV++ ++ + L L H F W I+ V LR+AL P
Sbjct: 339 IAKEDVKGLDRVVDYSRFSIMAIIGQGLFWVLSHLHSFL-HNWGWAIIGLVVLLRLALYP 397
Query: 140 LIVLQLKKIQRIAELLPRLPPPFPPPLSGKRFVDQ--------ISLFRREK--RAAGCPS 189
L Q K ++ PRL +R+ D + LF++EK GC
Sbjct: 398 LSAAQYKSGAKMRRFQPRLAQ------LKERYGDDRVKYQQATMELFKKEKINPMGGCLP 451
Query: 190 LLWFIASFAIQVPCF------LVGVTSIRRMSLDGHPGFDCGGIWWFQNLTEY-PHGVLG 242
LL IQ+P F LV +R+ G W Q+LT P+ +L
Sbjct: 452 LL-------IQMPIFFALYWVLVESVELRQAPWLG----------WIQDLTARDPYFIL- 493
Query: 243 SIFPVLMAGLHYTNVQLSFGASSLGKENGLLGLLAKYYKSYLNLMTLPLFFLGYYIPQGS 302
P+L N+ + + L G+ + AK + M L + ++P G
Sbjct: 494 ---PLL-------NISIMWATQKLTPTPGMDPMQAK----MMQFMPLVFGVMMAFMPAGL 539
Query: 303 LVYWVTNSSFS-IVQQLALKHPASRTMLGLPDKVVPAAAR 341
++YWV N ++Q ++ + P K++ A A+
Sbjct: 540 VLYWVVNGGLGLLIQWWMIRQHGEK-----PSKIIQANAK 574
>sp|Q3BLZ7|YIDC_XANC5 Membrane protein insertase YidC OS=Xanthomonas campestris pv.
vesicatoria (strain 85-10) GN=yidC PE=3 SV=1
Length = 574
Score = 40.8 bits (94), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 67/280 (23%), Positives = 108/280 (38%), Gaps = 62/280 (22%)
Query: 80 IPVETVNLSERVIESIAGEESSLPVRALISFLDTYHDFTGFPWWTIIVSSTVALRIALLP 139
I E V +RV++ ++ + L L H F W I+ V LR+AL P
Sbjct: 339 IAKEDVKGLDRVVDYSRFSIMAIIGQGLFWVLSHLHSFL-HNWGWAIIGLVVLLRLALYP 397
Query: 140 LIVLQLKKIQRIAELLPRLPPPFPPPLSGKRFVDQ--------ISLFRREK--RAAGCPS 189
L Q K ++ PRL +R+ D + LF++EK GC
Sbjct: 398 LSAAQYKSGAKMRRFQPRLAQ------LKERYGDDRVKYQQATMELFKKEKINPMGGCLP 451
Query: 190 LLWFIASFAIQVPCF------LVGVTSIRRMSLDGHPGFDCGGIWWFQNLTEY-PHGVLG 242
LL IQ+P F LV +R+ G W Q+LT P+ +L
Sbjct: 452 LL-------IQMPIFFALYWVLVESVELRQAPWLG----------WIQDLTARDPYFIL- 493
Query: 243 SIFPVLMAGLHYTNVQLSFGASSLGKENGLLGLLAKYYKSYLNLMTLPLFFLGYYIPQGS 302
P+L N+ + + L G+ + AK + M L + ++P G
Sbjct: 494 ---PLL-------NISIMWATQKLTPTPGMDPMQAK----MMQFMPLVFGVMMAFMPAGL 539
Query: 303 LVYWVTNSSFS-IVQQLALKHPASRTMLGLPDKVVPAAAR 341
++YWV N ++Q ++ + P K++ A A+
Sbjct: 540 VLYWVVNGGLGLLIQWWMIRQHGEK-----PSKIIQANAK 574
>sp|P60037|YIDC_WOLSU Membrane protein insertase YidC OS=Wolinella succinogenes (strain
ATCC 29543 / DSM 1740 / LMG 7466 / NCTC 11488 / FDC
602W) GN=yidC PE=3 SV=1
Length = 536
Score = 40.8 bits (94), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 56/245 (22%), Positives = 100/245 (40%), Gaps = 46/245 (18%)
Query: 90 RVIESIAGEESSLPVRALISF--------LDTYHDFTGFPWWTIIVSSTVALRIALLPLI 141
R++ESI + + I+F LD + F G W I++ T+ +RI L PL
Sbjct: 300 RLLESIYPSLTDVVEYGFITFFAKPLFLLLDWLYKFCGNWGWAIVLL-TLVVRIILFPLT 358
Query: 142 VLQLKKIQRIAELLPRLPPPFPPPLSG---KRFVDQISLFRREKR--AAGCPSLLWFIAS 196
+ +Q++ ++ P++ G K V + L+++ GC LL
Sbjct: 359 YKGMVSMQKLKDIAPKMKE-IQEKYKGDPQKLQVHMMELYKKHGANPMGGCLPLL----- 412
Query: 197 FAIQVPCFLVGVTSIRRMSLDGHPGFDCGGIWWFQNLTEY-PHGVLGSIFPVLMAGLHYT 255
+Q+P F +I R+ + I W +L+ P+ +L P+LM +
Sbjct: 413 --LQMPIFF----AIYRVLYNAIELKGADWILWINDLSVMDPYFIL----PILMGASMFL 462
Query: 256 NVQLSFGASSLGKENGLLGLLAKYYKSYLNLMTLPLFFLGYYI--PQGSLVYWVTNSSFS 313
L+ + + + L PL F +++ P G ++YW ++ FS
Sbjct: 463 QQHLTPTTFTDPMQEKVFKFL-------------PLIFTFFFVTFPSGLVLYWFVSNVFS 509
Query: 314 IVQQL 318
I QQL
Sbjct: 510 IAQQL 514
>sp|P31759|FRZF_MYXXA Protein methyltransferase FrzF OS=Myxococcus xanthus GN=frzF PE=4
SV=1
Length = 593
Score = 40.8 bits (94), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 67/152 (44%), Gaps = 14/152 (9%)
Query: 325 SRTMLGLPD--KVVPAAARKPEEIDTLETTLESPAKQLKISVENLTPKELIALSVKFLSK 382
SR LP V A R E+ + TT +P ++ L P E +A++V+ +++
Sbjct: 377 SRVTAELPTVGSVDSARPRITTELPAVATTPRAPTVEVPAWPTLLPPAERLAMAVRKMAQ 436
Query: 383 GDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEP 442
GD I +Q L EP +++ L+ +G G + EA E AI + EP
Sbjct: 437 GDFSAAIAGVQRLLADEPSDLDGLLTLGNLFSLTGRIPEAREAFAQAIQR--------EP 488
Query: 443 EAIDLLIVASQWSGVACIRQEKWEEGIAHLER 474
L + A + GVA ++ + E + L +
Sbjct: 489 ----LCVEARVFGGVAALQAGELSEARSELSK 516
>sp|Q8EKU1|YIDC_OCEIH Membrane protein insertase YidC OS=Oceanobacillus iheyensis (strain
DSM 14371 / JCM 11309 / KCTC 3954 / HTE831) GN=yidC PE=3
SV=1
Length = 252
Score = 40.4 bits (93), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 49/209 (23%), Positives = 84/209 (40%), Gaps = 35/209 (16%)
Query: 126 IVSSTVALRIALLPLIVLQLKKIQRIAELLPRLPPPFPPPLSGKRFVDQ------ISLFR 179
I+ T+ +R+ L+PL V Q+K + + E+ P+L S Q + LF+
Sbjct: 63 IIIVTLFVRLLLMPLNVKQIKSSKAMQEIQPKLQEIQKKYTSKDANTQQKLQQETMELFQ 122
Query: 180 RE--KRAAGCPSLLWFIASFAIQVPCFLVGVTSIRRMSLDGHPGFDCGGIWWFQNLTEYP 237
+ AGC +L +Q+P F+ +I R P WFQ
Sbjct: 123 KNGVNPLAGCLPIL-------VQMPIFVAMYHAIMR-----TPEISTHSFLWFQ------ 164
Query: 238 HGVLGS---IFPVLMAGLHYTNVQLSFGASSLGKENGLLGLLAKYYKSYLNLMTLPLFFL 294
LGS I P+L + +L ++ N + L + L +M + + +
Sbjct: 165 ---LGSPDYILPILTGLFTFLQQKLMMSTNTSMNSNPQMKL---QMQIMLYVMPIMIGVM 218
Query: 295 GYYIPQGSLVYWVTNSSFSIVQQLALKHP 323
++ P +YWVT + F + Q L + P
Sbjct: 219 AFFFPAALALYWVTGNIFMVFQTLLINKP 247
>sp|Q9ZJG8|YIDC_HELPJ Membrane protein insertase YidC OS=Helicobacter pylori (strain J99)
GN=yidC PE=3 SV=1
Length = 549
Score = 40.4 bits (93), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 53/219 (24%), Positives = 92/219 (42%), Gaps = 28/219 (12%)
Query: 105 RALISFLDTYHDFTGFPWWTIIVSSTVALRIALLPLIVLQLKKIQRIAELLPRLPPPFPP 164
+ + LD + F G W II+ T+ +RI L PL + +Q++ EL P++
Sbjct: 339 KGVFVLLDYLYQFVGNWGWAIILL-TIIVRIILYPLSYKGMVSMQKLKELAPKMKE-LQE 396
Query: 165 PLSGKRFVDQISLFRREKRAAGCPSLLWFIASFAIQVPCFLVGVTSIRRMSLDGHPGFDC 224
G+ Q + + K+ P L +Q+P F +I R+ +
Sbjct: 397 KYKGEPQKLQAHMMQLYKKHGANP--LGGCLPLILQIPVFF----AIYRVLYNAVELKSS 450
Query: 225 GGIWWFQNLTEY-PHGVLGSIFPVLMAGLHYTNVQLSFGASSLGKENGLLGLLAKYYKSY 283
+ W +L+ P+ +L P+LM Y + S+ + AK +K
Sbjct: 451 EWVLWIHDLSIMDPYFIL----PLLMGASMYWH-------QSVTPNTMTDPMQAKIFK-- 497
Query: 284 LNLMTLPLFFLGYYI--PQGSLVYWVTNSSFSIVQQLAL 320
LPL F + I P G ++YW T++ S++QQL +
Sbjct: 498 ----LLPLLFTIFLITFPAGLVLYWTTHNILSVLQQLII 532
>sp|P54493|GLUP_BACSU Rhomboid protease GluP OS=Bacillus subtilis (strain 168) GN=gluP
PE=1 SV=2
Length = 507
Score = 39.7 bits (91), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 50/169 (29%), Positives = 73/169 (43%), Gaps = 37/169 (21%)
Query: 372 LIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAIS 431
LIAL+V FL G L+ +ALI Q+G EE E
Sbjct: 371 LIALAVGFLYYG------------LHSPSHQESALIQQASELYQEGKYEEVTE------- 411
Query: 432 KLFLAGHPTEPEA-IDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHY 490
L G + +A DLL + + V+ I+ ++++ ++ LER +EPK A Y
Sbjct: 412 --LLNGEAAQKDASADLLKILA----VSDIQIGEYDQAVSLLER----AVKKEPKDHASY 461
Query: 491 YDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQ---YNELLEQLENNDE 536
Y+ LA A+AEK ++ A P+ Y EL Q+ENN E
Sbjct: 462 YN----LALLYAEKNELAQAEKAIQTAVKLKPKEQRYKELQRQIENNKE 506
>sp|Q9PKE3|YIDC_CHLMU Membrane protein insertase YidC OS=Chlamydia muridarum (strain MoPn
/ Nigg) GN=yidC PE=3 SV=1
Length = 787
Score = 39.3 bits (90), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 53/245 (21%), Positives = 94/245 (38%), Gaps = 56/245 (22%)
Query: 103 PVRALISFLDTYHDFTGFPWWTIIVSSTVALRIALLPLIVLQLKKIQRIAELLPRLPPPF 162
P AL+ + + F W I+ T+ L++ L PL ++ ++R+ +L P +
Sbjct: 551 PFAALLFIIMKFFQFLTGSWGISIILLTIVLKLVLYPLNAWSIRSMRRMQKLSPYIQ--- 607
Query: 163 PPPLSGKRFVDQISLFRRE-KRA----------------AGCPSLLWFIASFAIQVPCFL 205
D ++RE KRA GC L+ IQ+P +
Sbjct: 608 ----------DIQQKYKREPKRAQMEIMALYKVNKVNPITGCLPLI-------IQIPFLI 650
Query: 206 VGVTSIRRMSLDGHPGFDCGGIWWFQNLT--------EYPHGVLGSIF---PVLMAGLHY 254
++ L F G W NLT E P +G F P+L+ + +
Sbjct: 651 AMFDLLKSSFLLRGASFIPG---WIDNLTAPDVLFSWETPIWFIGKEFHLLPILLGIVMF 707
Query: 255 TNVQLSFGASSLGKENGLLGLLAKYYKSYLNLMTLPLFFLGYYIPQGSLVYWVTNSSFSI 314
++S K +G + + ++ +M L F+ Y P G +YW+++ +
Sbjct: 708 AQQKIS-----AIKRSGPVSDQQRQQEAMGTMMALLFTFMFYNFPSGLNIYWLSSMLLGV 762
Query: 315 VQQLA 319
+QQ A
Sbjct: 763 IQQWA 767
>sp|O51398|YIDC_BORBU Membrane protein insertase YidC OS=Borrelia burgdorferi (strain
ATCC 35210 / B31 / CIP 102532 / DSM 4680) GN=yidC PE=3
SV=1
Length = 544
Score = 38.9 bits (89), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 54/219 (24%), Positives = 98/219 (44%), Gaps = 32/219 (14%)
Query: 122 WWTIIVSSTVALRIALLPLIVLQLKKIQRIAELLPR---LPPPFPPPLSGKRFVDQISLF 178
W I+ T+ +RI + PL + +++L P+ L F K+ +++
Sbjct: 343 WGLSIIFLTIVVRILIFPLTFKGFRATAELSKLQPKMKELQAKFKH--DPKKLNEEMGRL 400
Query: 179 RREKRA---AGC-PSLLW---FIASFAIQVPCFLVGVTS-----IRRMSLDGHPGFDCGG 226
+E+ GC P +L F A +++ FL+ S I +S+ G + G
Sbjct: 401 YKEEGVNPLGGCLPVILQLPIFFALYSLVNNLFLLRGASFIPGWIDDLSI-GDSVYHFGY 459
Query: 227 IWWFQNLTEYPHGVLGSIFPVLMAGLHYTNVQLSFGASSLGKENGLLGLLAKYYKSYLNL 286
+F + T+ I P +M +T + + +S++ +N LG K+ Y
Sbjct: 460 KLYFVSWTDI------RILPFIMM---FTQLGSTIVSSNMDLKN--LGAQQKFL--YFG- 505
Query: 287 MTLPLFFLGYYIPQGSLVYWVTNSSFSIVQQLALKHPAS 325
M + FF+ Y +P G L+YW+T + F+I+QQ +K S
Sbjct: 506 MPIMFFFILYNMPSGLLIYWITTNIFTILQQYYIKMHLS 544
>sp|B7J208|YIDC_BORBZ Membrane protein insertase YidC OS=Borrelia burgdorferi (strain
ZS7) GN=yidC PE=3 SV=1
Length = 544
Score = 38.9 bits (89), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 54/219 (24%), Positives = 98/219 (44%), Gaps = 32/219 (14%)
Query: 122 WWTIIVSSTVALRIALLPLIVLQLKKIQRIAELLPR---LPPPFPPPLSGKRFVDQISLF 178
W I+ T+ +RI + PL + +++L P+ L F K+ +++
Sbjct: 343 WGLSIIFLTIVVRILIFPLTFKGFRATAELSKLQPKMKELQAKFKH--DPKKLNEEMGRL 400
Query: 179 RREKRA---AGC-PSLLW---FIASFAIQVPCFLVGVTS-----IRRMSLDGHPGFDCGG 226
+E+ GC P +L F A +++ FL+ S I +S+ G + G
Sbjct: 401 YKEEGVNPLGGCLPVILQLPIFFALYSLVNNLFLLRGASFIPGWIDDLSI-GDSVYHFGY 459
Query: 227 IWWFQNLTEYPHGVLGSIFPVLMAGLHYTNVQLSFGASSLGKENGLLGLLAKYYKSYLNL 286
+F + T+ I P +M +T + + +S++ +N LG K+ Y
Sbjct: 460 KLYFVSWTDI------RILPFIMM---FTQLGSTIVSSNMDLKN--LGAQQKFL--YFG- 505
Query: 287 MTLPLFFLGYYIPQGSLVYWVTNSSFSIVQQLALKHPAS 325
M + FF+ Y +P G L+YW+T + F+I+QQ +K S
Sbjct: 506 MPIMFFFILYNMPSGLLIYWITTNIFTILQQYYIKMHLS 544
>sp|Q3J6L8|YIDC_NITOC Membrane protein insertase YidC OS=Nitrosococcus oceani (strain
ATCC 19707 / NCIMB 11848) GN=yidC PE=3 SV=1
Length = 545
Score = 38.5 bits (88), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 51/218 (23%), Positives = 96/218 (44%), Gaps = 37/218 (16%)
Query: 107 LISFLDTYHDFTGFPWWTIIVSSTVALRIALLPLIVLQLKKIQRIAELLPRLPPPFPPPL 166
L + +H+ G W I++ T +++ L + + R+ +L PRL
Sbjct: 347 LFWLMSWFHNLVGNWGWAIVLL-TFVVKLVFFKLSQTSYRSMARMRKLQPRLLALKERYG 405
Query: 167 SGKRFVDQ--ISLFRREKR--AAGCPSLLWFIASFAIQVPCFLVGVTSIRRMSLDGHPGF 222
++ V Q + L+R+EK GC ++ +Q+P F+ ++ M L+
Sbjct: 406 DDRQKVGQAMMELYRKEKVNPMGGCLPIV-------VQIPVFI----ALYWMLLESVELR 454
Query: 223 DCGGIWWFQNLT-EYPHGVLGSIFPVLMAGLHYTNVQLSFGASSLGKENGLLGLLAKYYK 281
I+W Q+LT + P+ +L P+LM + +LS A + + ++ L+
Sbjct: 455 QAPFIFWIQDLTSKDPYYIL----PLLMGVSMFVQQKLS-PAPTDPIQAKVMALM----- 504
Query: 282 SYLNLMTLPLFFLGYYI--PQGSLVYWVTNSSFSIVQQ 317
P+ F +++ P G ++YWV N+ SI QQ
Sbjct: 505 --------PVMFTVFFVMFPAGLVLYWVVNNILSIAQQ 534
>sp|Q03D58|YIDC_PEDPA Membrane protein insertase YidC OS=Pediococcus pentosaceus (strain
ATCC 25745 / 183-1w) GN=yidC PE=3 SV=1
Length = 279
Score = 38.5 bits (88), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 44/199 (22%), Positives = 76/199 (38%), Gaps = 37/199 (18%)
Query: 136 ALLPLIVLQLKKIQRIAELLPRLPPPFPPPLSGKRFVDQISLFRREKR---------AAG 186
+LPL++ Q + + AEL P+L S + Q L +++ AG
Sbjct: 73 IILPLMIYQTRTTMKTAELQPKL-KQLQQKYSSRDAESQQKLREEQQKLYAEAGVNPMAG 131
Query: 187 CPSLLWFIASFAIQVPCFLVGVTSIRRMSLDGHPGFDCGGIWWFQNLTEYPHGVLGSIFP 246
C L+ IQ+P ++ R + G W Q + P+ +L P
Sbjct: 132 CLPLI-------IQLPVMYALYAAVSRTQV-----LKEGTFLWLQLSDKDPYFIL----P 175
Query: 247 VLMAGLHYTNVQLSFGASSLGKENGLLGLLAKYYKSYLNLMTLPLFFL--GYYIPQGSLV 304
+L A + + LS + G +NG+ + +PL L P +
Sbjct: 176 ILAALFTFMSTWLSMKSQPAGSQNGMTSAMT---------FGMPLVILITALNFPAAITL 226
Query: 305 YWVTNSSFSIVQQLALKHP 323
YWV + F + Q L +++P
Sbjct: 227 YWVVTNLFQVGQTLIIQNP 245
>sp|Q0SN67|YIDC_BORAP Membrane protein insertase YidC OS=Borrelia afzelii (strain PKo)
GN=yidC PE=3 SV=1
Length = 544
Score = 38.5 bits (88), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 25/39 (64%)
Query: 287 MTLPLFFLGYYIPQGSLVYWVTNSSFSIVQQLALKHPAS 325
M + FF+ Y +P G L+YW+T + F+I+QQ +K S
Sbjct: 506 MPIMFFFILYNMPSGLLIYWITTNIFTILQQYYIKMHLS 544
>sp|Q5X0M2|YIDC_LEGPA Membrane protein insertase YidC OS=Legionella pneumophila (strain
Paris) GN=yidC PE=3 SV=1
Length = 556
Score = 38.5 bits (88), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 57/242 (23%), Positives = 101/242 (41%), Gaps = 40/242 (16%)
Query: 107 LISFLDTYHDFTGFPWWTIIVSSTVALRIALLPLIVLQLKKIQRIAELLPRLPPPFPPPL 166
L S + + G W+I++ TV +++A L K + + +L P+L
Sbjct: 348 LFSLMKAIYTVVGNWGWSIVLV-TVLIKLAFYRLSATSYKSMASMRKLQPKLQALRERYG 406
Query: 167 SGKRFVDQ--ISLFRREKRA--AGCPSLLWFIASFAIQVPCFLVGVTSIRRMSLDGHPGF 222
K + Q + L+++EK GC +L IQ+P F+ ++ + L+
Sbjct: 407 DDKAKISQATMELYKQEKVNPLGGCLPIL-------IQIPVFI----ALYWVLLESVELR 455
Query: 223 DCGGIWWFQNLTEY-PHGVLGSIFPVLMAGLHYTNVQLSFGASSLGKENGLLGLLAKYYK 281
I+W +L P+ VL P++M +L+ + + AK
Sbjct: 456 QAPFIFWINDLASADPYHVL----PLIMGATMLIQQKLNPAPAD--------PMQAKV-- 501
Query: 282 SYLNLMTLPLFFLGYY--IPQGSLVYWVTNSSFSIVQQLALKHPASRTMLGLPDKVVPAA 339
+M LP+ F G + P G ++YW+ N++ SI+QQ + S P K V A
Sbjct: 502 ----MMFLPILFTGLFWNFPSGLVLYWIVNNTLSILQQWYITRKYSDEK---PAKKVVAT 554
Query: 340 AR 341
A+
Sbjct: 555 AK 556
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.137 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 209,406,823
Number of Sequences: 539616
Number of extensions: 9139491
Number of successful extensions: 29231
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 144
Number of HSP's that attempted gapping in prelim test: 29056
Number of HSP's gapped (non-prelim): 244
length of query: 550
length of database: 191,569,459
effective HSP length: 123
effective length of query: 427
effective length of database: 125,196,691
effective search space: 53458987057
effective search space used: 53458987057
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 64 (29.3 bits)