Query 008887
Match_columns 550
No_of_seqs 396 out of 3113
Neff 8.8
Searched_HMMs 46136
Date Thu Mar 28 17:49:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008887.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008887hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK02944 OxaA-like protein pre 100.0 4.5E-42 9.7E-47 332.1 16.0 207 103-332 40-252 (255)
2 PRK00145 putative inner membra 100.0 3.9E-41 8.5E-46 319.8 16.6 198 109-328 18-217 (223)
3 PRK01622 OxaA-like protein pre 100.0 1E-38 2.2E-43 309.2 17.5 198 104-323 42-250 (256)
4 TIGR03592 yidC_oxa1_cterm memb 100.0 1.7E-38 3.7E-43 293.7 16.3 178 121-321 1-180 (181)
5 PRK02463 OxaA-like protein pre 100.0 2.3E-38 5E-43 311.8 18.1 209 103-337 41-267 (307)
6 PF02096 60KD_IMP: 60Kd inner 100.0 1.7E-38 3.6E-43 300.0 16.0 188 121-323 2-196 (198)
7 PRK01318 membrane protein inse 100.0 1.4E-38 3.1E-43 335.1 16.4 198 98-323 298-507 (521)
8 PRK01001 putative inner membra 100.0 2.9E-38 6.3E-43 332.5 16.0 199 107-323 562-777 (795)
9 PRK03449 putative inner membra 100.0 4.7E-36 1E-40 294.1 15.2 217 98-321 3-267 (304)
10 COG0706 YidC Preprotein transl 100.0 3.5E-35 7.6E-40 293.7 18.4 207 98-327 86-300 (314)
11 PRK02201 putative inner membra 100.0 1.6E-35 3.4E-40 295.2 15.5 212 101-323 109-341 (357)
12 PRK01315 putative inner membra 100.0 1.6E-35 3.4E-40 293.0 13.5 216 98-321 9-255 (329)
13 PRK00247 putative inner membra 100.0 6.2E-33 1.3E-37 281.5 17.9 214 99-321 4-270 (429)
14 KOG1239 Inner membrane protein 100.0 1.2E-28 2.5E-33 249.8 17.4 220 97-337 77-304 (372)
15 PRK02654 putative inner membra 99.9 5E-27 1.1E-31 225.5 16.8 102 105-214 11-119 (375)
16 KOG4626 O-linked N-acetylgluco 99.7 5.9E-16 1.3E-20 158.8 15.0 220 299-539 249-470 (966)
17 COG3063 PilF Tfp pilus assembl 99.6 4.4E-15 9.6E-20 136.7 16.1 145 371-533 37-181 (250)
18 KOG4626 O-linked N-acetylgluco 99.6 9.5E-16 2.1E-20 157.3 11.2 159 359-537 276-434 (966)
19 PRK15359 type III secretion sy 99.6 1.5E-13 3.2E-18 122.9 16.2 125 387-534 11-135 (144)
20 PRK11189 lipoprotein NlpI; Pro 99.5 8.6E-13 1.9E-17 132.7 18.6 152 369-533 64-279 (296)
21 KOG1155 Anaphase-promoting com 99.5 2.9E-13 6.3E-18 135.4 14.0 155 364-538 325-479 (559)
22 TIGR00990 3a0801s09 mitochondr 99.5 1.6E-12 3.6E-17 144.2 18.9 134 371-524 367-500 (615)
23 PRK10370 formate-dependent nit 99.5 1.5E-12 3.4E-17 122.6 15.7 131 382-532 52-185 (198)
24 COG3063 PilF Tfp pilus assembl 99.5 1.3E-12 2.8E-17 120.6 14.5 151 361-529 61-211 (250)
25 PRK15359 type III secretion sy 99.5 9.4E-13 2E-17 117.7 12.9 117 367-503 22-138 (144)
26 KOG1126 DNA-binding cell divis 99.4 1.9E-13 4.2E-18 142.6 9.4 143 366-528 418-560 (638)
27 TIGR02552 LcrH_SycD type III s 99.4 3.5E-12 7.6E-17 112.6 16.2 124 390-533 4-127 (135)
28 TIGR02521 type_IV_pilW type IV 99.4 8.1E-12 1.8E-16 119.5 18.9 141 370-528 32-172 (234)
29 PRK12370 invasion protein regu 99.4 3.5E-12 7.6E-17 139.5 17.9 152 362-532 331-482 (553)
30 TIGR00990 3a0801s09 mitochondr 99.4 2.6E-12 5.6E-17 142.6 16.7 147 368-534 330-476 (615)
31 TIGR02521 type_IV_pilW type IV 99.4 1.8E-11 3.9E-16 117.1 18.7 147 368-532 64-210 (234)
32 KOG1126 DNA-binding cell divis 99.4 1.7E-12 3.6E-17 135.7 12.1 203 303-526 422-626 (638)
33 PRK12370 invasion protein regu 99.4 8.8E-12 1.9E-16 136.3 17.7 146 368-533 294-449 (553)
34 PRK15174 Vi polysaccharide exp 99.4 1.7E-11 3.6E-16 136.5 20.2 138 368-525 245-386 (656)
35 PRK15179 Vi polysaccharide bio 99.4 2.3E-11 5.1E-16 134.0 19.2 140 368-527 85-224 (694)
36 PRK09782 bacteriophage N4 rece 99.4 1.8E-11 4E-16 139.9 18.6 137 374-531 581-717 (987)
37 TIGR03302 OM_YfiO outer membra 99.3 6.9E-11 1.5E-15 114.9 18.1 158 367-534 31-212 (235)
38 KOG1155 Anaphase-promoting com 99.3 4.9E-11 1.1E-15 119.7 15.8 132 368-519 363-494 (559)
39 KOG0553 TPR repeat-containing 99.3 3.2E-11 7E-16 115.7 13.0 111 404-534 82-192 (304)
40 PRK09782 bacteriophage N4 rece 99.3 7.3E-11 1.6E-15 135.0 18.2 146 369-535 542-687 (987)
41 PRK15363 pathogenicity island 99.3 1.6E-10 3.6E-15 102.1 16.0 111 396-526 27-138 (157)
42 COG2956 Predicted N-acetylgluc 99.3 5E-11 1.1E-15 114.8 13.5 198 309-526 37-249 (389)
43 PRK11447 cellulose synthase su 99.3 9.2E-11 2E-15 139.0 18.7 147 374-533 274-427 (1157)
44 PRK15174 Vi polysaccharide exp 99.3 1.1E-10 2.4E-15 130.0 18.2 136 374-529 217-356 (656)
45 KOG1173 Anaphase-promoting com 99.3 5.5E-11 1.2E-15 122.1 13.2 152 373-537 384-535 (611)
46 COG4783 Putative Zn-dependent 99.2 3.3E-10 7.1E-15 115.2 18.1 152 367-538 304-455 (484)
47 KOG0550 Molecular chaperone (D 99.2 2.9E-11 6.3E-16 119.8 9.5 163 367-550 201-375 (486)
48 PRK11189 lipoprotein NlpI; Pro 99.2 1.5E-10 3.3E-15 116.4 14.4 122 384-525 41-166 (296)
49 KOG0553 TPR repeat-containing 99.2 8.6E-11 1.9E-15 112.8 11.8 120 369-508 81-200 (304)
50 PRK11447 cellulose synthase su 99.2 3.4E-10 7.4E-15 134.2 19.5 145 374-531 356-535 (1157)
51 PRK11788 tetratricopeptide rep 99.2 4.7E-10 1E-14 117.4 18.0 139 371-524 109-247 (389)
52 KOG1125 TPR repeat-containing 99.2 1.2E-10 2.6E-15 120.2 13.0 94 371-476 287-380 (579)
53 TIGR03302 OM_YfiO outer membra 99.2 4.6E-10 1E-14 109.0 16.6 143 370-522 71-234 (235)
54 PRK11788 tetratricopeptide rep 99.2 3.7E-10 8.1E-15 118.1 17.0 141 372-532 183-323 (389)
55 KOG0547 Translocase of outer m 99.2 1.5E-10 3.2E-15 117.0 12.6 132 372-523 363-494 (606)
56 PRK15363 pathogenicity island 99.2 2.7E-10 5.9E-15 100.7 11.8 100 368-479 34-133 (157)
57 PF13429 TPR_15: Tetratricopep 99.2 6.6E-11 1.4E-15 118.2 8.6 132 368-519 145-276 (280)
58 TIGR02917 PEP_TPR_lipo putativ 99.2 1.1E-09 2.4E-14 126.0 19.8 153 368-533 21-201 (899)
59 PLN03088 SGT1, suppressor of 99.2 4.3E-10 9.2E-15 115.9 14.4 114 371-504 4-117 (356)
60 PF13429 TPR_15: Tetratricopep 99.1 2.6E-10 5.6E-15 114.0 11.8 151 368-538 109-261 (280)
61 TIGR02917 PEP_TPR_lipo putativ 99.1 1.5E-09 3.3E-14 124.9 18.9 144 370-534 737-880 (899)
62 PRK10370 formate-dependent nit 99.1 1E-09 2.2E-14 103.5 13.4 106 365-482 69-177 (198)
63 COG5010 TadD Flp pilus assembl 99.1 3.8E-09 8.2E-14 99.8 16.9 129 368-516 99-227 (257)
64 PRK10049 pgaA outer membrane p 99.1 3E-09 6.5E-14 120.9 19.4 146 367-533 13-158 (765)
65 COG5010 TadD Flp pilus assembl 99.1 2.1E-09 4.5E-14 101.6 14.8 119 373-511 70-188 (257)
66 KOG1840 Kinesin light chain [C 99.1 8.5E-10 1.8E-14 116.4 12.7 144 374-521 246-397 (508)
67 PLN03088 SGT1, suppressor of 99.1 2.6E-09 5.6E-14 110.1 15.7 109 406-534 5-113 (356)
68 TIGR02552 LcrH_SycD type III s 99.1 1.8E-09 4E-14 95.1 12.6 104 368-484 16-119 (135)
69 KOG1129 TPR repeat-containing 99.1 2.7E-10 5.9E-15 109.7 7.7 146 371-533 292-437 (478)
70 KOG1840 Kinesin light chain [C 99.1 1.5E-09 3.2E-14 114.6 13.5 146 372-521 202-355 (508)
71 KOG1125 TPR repeat-containing 99.1 6.9E-10 1.5E-14 114.6 10.7 103 401-523 428-530 (579)
72 KOG0547 Translocase of outer m 99.1 3.8E-09 8.1E-14 107.0 15.3 148 369-536 326-473 (606)
73 PLN02789 farnesyltranstransfer 99.1 5.5E-09 1.2E-13 105.5 16.6 137 378-534 46-185 (320)
74 TIGR02795 tol_pal_ybgF tol-pal 99.0 6.7E-09 1.5E-13 88.9 14.7 113 403-529 2-114 (119)
75 KOG0624 dsRNA-activated protei 99.0 2.5E-09 5.5E-14 103.8 13.0 101 370-483 39-139 (504)
76 PRK15179 Vi polysaccharide bio 99.0 6.8E-09 1.5E-13 114.7 18.0 139 378-536 58-199 (694)
77 KOG0548 Molecular co-chaperone 99.0 3E-09 6.4E-14 109.2 13.9 143 371-533 300-468 (539)
78 KOG0624 dsRNA-activated protei 99.0 1.9E-09 4.1E-14 104.6 11.7 163 368-550 222-396 (504)
79 PF09976 TPR_21: Tetratricopep 99.0 8.8E-09 1.9E-13 92.2 15.2 131 370-518 12-145 (145)
80 KOG2076 RNA polymerase III tra 99.0 6.4E-09 1.4E-13 112.3 16.1 134 369-522 139-272 (895)
81 TIGR02795 tol_pal_ybgF tol-pal 99.0 6.7E-09 1.5E-13 88.9 12.2 106 369-484 2-110 (119)
82 PLN02789 farnesyltranstransfer 99.0 9.7E-09 2.1E-13 103.7 14.9 150 368-537 70-229 (320)
83 PRK10049 pgaA outer membrane p 99.0 1.2E-08 2.5E-13 116.0 17.3 139 371-529 312-465 (765)
84 COG4235 Cytochrome c biogenesi 99.0 1.4E-08 3E-13 98.4 15.0 133 386-538 139-274 (287)
85 KOG0543 FKBP-type peptidyl-pro 99.0 9.2E-09 2E-13 103.0 13.7 118 407-533 212-333 (397)
86 PF13525 YfiO: Outer membrane 98.9 4.9E-08 1.1E-12 92.6 17.3 155 367-531 3-181 (203)
87 PRK10153 DNA-binding transcrip 98.9 1.9E-08 4.2E-13 108.0 16.2 147 367-533 337-494 (517)
88 CHL00033 ycf3 photosystem I as 98.9 2.1E-08 4.5E-13 92.2 13.8 138 379-526 9-155 (168)
89 PRK10866 outer membrane biogen 98.9 7E-08 1.5E-12 93.9 18.0 155 367-531 30-215 (243)
90 cd00189 TPR Tetratricopeptide 98.9 2.2E-08 4.8E-13 80.3 12.0 98 405-522 2-99 (100)
91 PRK02603 photosystem I assembl 98.9 2E-08 4.4E-13 92.6 12.5 109 400-525 32-154 (172)
92 KOG2002 TPR-containing nuclear 98.9 3.8E-08 8.2E-13 107.2 16.2 150 368-533 232-384 (1018)
93 PRK14574 hmsH outer membrane p 98.9 3.7E-08 8E-13 110.9 16.6 139 374-533 73-211 (822)
94 KOG1173 Anaphase-promoting com 98.9 2.7E-08 5.8E-13 102.7 14.0 156 364-532 341-496 (611)
95 TIGR00540 hemY_coli hemY prote 98.9 2.1E-07 4.5E-12 98.2 21.0 135 372-525 87-221 (409)
96 KOG2003 TPR repeat-containing 98.9 1.7E-08 3.6E-13 101.2 11.1 152 360-531 481-632 (840)
97 PRK10803 tol-pal system protei 98.8 4.6E-08 1E-12 95.9 14.0 107 368-484 141-251 (263)
98 PRK10803 tol-pal system protei 98.8 9.7E-08 2.1E-12 93.7 16.0 114 402-529 141-255 (263)
99 cd00189 TPR Tetratricopeptide 98.8 3.6E-08 7.8E-13 79.1 10.8 97 371-479 2-98 (100)
100 KOG3060 Uncharacterized conser 98.8 1.6E-07 3.5E-12 88.2 16.1 143 368-530 85-230 (289)
101 PF13432 TPR_16: Tetratricopep 98.8 1E-08 2.3E-13 78.0 6.1 64 374-442 2-65 (65)
102 KOG2002 TPR-containing nuclear 98.8 7.5E-08 1.6E-12 104.9 14.5 154 362-534 263-423 (1018)
103 PRK15331 chaperone protein Sic 98.8 1.3E-07 2.9E-12 84.1 13.6 115 395-530 29-143 (165)
104 PF12895 Apc3: Anaphase-promot 98.8 1.5E-08 3.3E-13 81.5 7.0 84 415-517 1-84 (84)
105 KOG1129 TPR repeat-containing 98.8 7.8E-09 1.7E-13 99.9 5.8 143 373-532 328-470 (478)
106 PF13414 TPR_11: TPR repeat; P 98.8 1.5E-08 3.2E-13 78.1 6.3 65 368-432 2-67 (69)
107 PRK14574 hmsH outer membrane p 98.8 2E-07 4.4E-12 105.0 17.6 130 366-516 99-228 (822)
108 PF13432 TPR_16: Tetratricopep 98.8 2.7E-08 5.8E-13 75.8 7.4 64 454-525 2-65 (65)
109 COG4700 Uncharacterized protei 98.8 1.2E-06 2.5E-11 78.7 18.7 131 369-518 89-220 (251)
110 KOG1174 Anaphase-promoting com 98.8 1.9E-07 4.1E-12 93.1 15.1 160 365-533 330-513 (564)
111 CHL00033 ycf3 photosystem I as 98.7 1.8E-07 3.9E-12 85.9 13.7 106 369-479 35-150 (168)
112 PF13414 TPR_11: TPR repeat; P 98.7 3.1E-08 6.7E-13 76.3 7.3 68 401-481 1-69 (69)
113 KOG4162 Predicted calmodulin-b 98.7 1.7E-07 3.7E-12 100.0 15.0 132 374-525 655-788 (799)
114 cd05804 StaR_like StaR_like; a 98.7 1.2E-07 2.7E-12 97.8 14.0 130 378-523 85-218 (355)
115 COG4783 Putative Zn-dependent 98.7 6.1E-07 1.3E-11 91.7 18.0 122 398-539 301-422 (484)
116 PRK11906 transcriptional regul 98.7 2.3E-07 4.9E-12 95.3 14.9 136 371-526 257-407 (458)
117 PRK10747 putative protoheme IX 98.7 1.1E-06 2.4E-11 92.4 20.4 139 371-529 86-225 (398)
118 KOG0548 Molecular co-chaperone 98.7 1E-07 2.2E-12 98.1 12.0 128 369-516 358-485 (539)
119 COG2956 Predicted N-acetylgluc 98.7 5.9E-07 1.3E-11 87.2 16.2 143 371-533 182-324 (389)
120 KOG4234 TPR repeat-containing 98.7 2.2E-07 4.8E-12 84.1 12.2 115 404-533 96-210 (271)
121 PRK02603 photosystem I assembl 98.7 3E-07 6.6E-12 84.8 13.7 100 368-479 34-150 (172)
122 cd05804 StaR_like StaR_like; a 98.7 4.3E-07 9.3E-12 93.8 16.4 101 371-479 116-216 (355)
123 PRK10747 putative protoheme IX 98.7 2.7E-07 5.9E-12 96.9 14.9 130 368-521 262-391 (398)
124 KOG2003 TPR repeat-containing 98.7 3.3E-07 7.2E-12 92.0 14.4 153 369-534 524-703 (840)
125 PF13512 TPR_18: Tetratricopep 98.7 3E-07 6.6E-12 80.1 12.5 108 367-484 8-133 (142)
126 PRK15331 chaperone protein Sic 98.7 2.3E-07 5.1E-12 82.6 11.8 102 369-484 37-138 (165)
127 COG1729 Uncharacterized protei 98.7 2.6E-07 5.7E-12 88.6 13.0 107 368-484 140-249 (262)
128 TIGR00540 hemY_coli hemY prote 98.7 3.3E-07 7.2E-12 96.7 15.0 134 368-520 262-399 (409)
129 KOG3060 Uncharacterized conser 98.7 7.2E-07 1.6E-11 83.9 15.2 141 374-534 57-197 (289)
130 KOG0550 Molecular chaperone (D 98.7 1.6E-07 3.5E-12 93.7 11.4 147 374-529 174-325 (486)
131 PF12895 Apc3: Anaphase-promot 98.7 3.1E-08 6.7E-13 79.7 5.0 82 381-475 1-84 (84)
132 KOG0495 HAT repeat protein [RN 98.6 4.2E-07 9.2E-12 95.2 14.2 151 373-545 588-738 (913)
133 PF12688 TPR_5: Tetratrico pep 98.6 6.2E-07 1.4E-11 76.8 12.9 103 403-519 1-103 (120)
134 COG1729 Uncharacterized protei 98.6 6.2E-07 1.3E-11 86.1 13.6 111 406-530 144-254 (262)
135 KOG1156 N-terminal acetyltrans 98.5 6.4E-07 1.4E-11 94.0 12.4 143 370-532 8-150 (700)
136 KOG1128 Uncharacterized conser 98.5 2.9E-07 6.2E-12 97.8 9.3 134 368-521 484-617 (777)
137 PRK14720 transcript cleavage f 98.5 1.2E-06 2.6E-11 98.1 14.5 138 368-521 30-179 (906)
138 KOG1174 Anaphase-promoting com 98.5 7.2E-07 1.6E-11 89.0 11.2 144 368-524 299-471 (564)
139 KOG0543 FKBP-type peptidyl-pro 98.5 1.4E-06 3.1E-11 87.5 12.9 129 374-522 213-357 (397)
140 PF12688 TPR_5: Tetratrico pep 98.5 1.8E-06 3.8E-11 74.0 11.8 101 369-478 1-104 (120)
141 PF12569 NARP1: NMDA receptor- 98.5 8.3E-06 1.8E-10 87.4 18.9 152 374-533 43-270 (517)
142 PF13424 TPR_12: Tetratricopep 98.5 2.3E-07 4.9E-12 73.4 5.2 74 400-478 2-75 (78)
143 KOG4648 Uncharacterized conser 98.5 4.5E-07 9.8E-12 88.4 8.0 108 406-533 100-207 (536)
144 PF09295 ChAPs: ChAPs (Chs5p-A 98.5 2.6E-06 5.5E-11 88.0 14.1 124 374-520 174-297 (395)
145 PF13424 TPR_12: Tetratricopep 98.5 3.1E-07 6.7E-12 72.6 5.7 70 450-520 6-75 (78)
146 PF13512 TPR_18: Tetratricopep 98.4 6.4E-06 1.4E-10 71.9 14.1 113 402-528 9-136 (142)
147 PF14938 SNAP: Soluble NSF att 98.4 9.7E-07 2.1E-11 88.2 10.2 146 374-526 79-231 (282)
148 COG4785 NlpI Lipoprotein NlpI, 98.4 1.1E-06 2.4E-11 80.7 9.4 138 371-521 67-267 (297)
149 KOG4555 TPR repeat-containing 98.4 3.2E-06 6.9E-11 71.5 11.3 101 371-479 45-145 (175)
150 PF14559 TPR_19: Tetratricopep 98.4 4.7E-07 1E-11 69.4 5.8 67 459-533 1-67 (68)
151 COG4235 Cytochrome c biogenesi 98.4 3.4E-06 7.3E-11 82.0 12.3 105 368-484 155-262 (287)
152 COG4105 ComL DNA uptake lipopr 98.4 2.2E-05 4.8E-10 74.8 17.2 156 367-532 32-208 (254)
153 KOG1156 N-terminal acetyltrans 98.4 5.8E-06 1.3E-10 87.0 14.4 156 368-536 74-264 (700)
154 KOG0495 HAT repeat protein [RN 98.4 7E-06 1.5E-10 86.3 14.6 142 368-529 650-791 (913)
155 PF14938 SNAP: Soluble NSF att 98.4 1.5E-06 3.2E-11 86.9 9.4 142 371-521 36-185 (282)
156 PF13371 TPR_9: Tetratricopept 98.4 2.2E-06 4.7E-11 66.7 8.3 68 456-531 2-69 (73)
157 PF13525 YfiO: Outer membrane 98.4 8.7E-06 1.9E-10 77.2 13.9 111 402-526 4-125 (203)
158 KOG1128 Uncharacterized conser 98.3 2.6E-06 5.7E-11 90.7 10.7 138 373-531 428-593 (777)
159 KOG4648 Uncharacterized conser 98.3 3.2E-06 6.9E-11 82.6 10.3 99 373-484 101-199 (536)
160 KOG1130 Predicted G-alpha GTPa 98.3 4.4E-07 9.6E-12 90.3 4.5 140 374-521 200-345 (639)
161 PLN03098 LPA1 LOW PSII ACCUMUL 98.3 2.2E-06 4.8E-11 88.0 9.7 66 367-432 73-141 (453)
162 PRK10866 outer membrane biogen 98.3 2.5E-05 5.4E-10 76.1 16.5 112 401-526 30-159 (243)
163 KOG1127 TPR repeat-containing 98.3 2.4E-06 5.2E-11 93.5 10.1 130 385-527 474-632 (1238)
164 KOG4162 Predicted calmodulin-b 98.3 2.8E-06 6.1E-11 90.9 10.4 106 366-484 681-788 (799)
165 PF04733 Coatomer_E: Coatomer 98.3 1.3E-05 2.9E-10 79.9 14.0 143 370-532 132-277 (290)
166 PRK14720 transcript cleavage f 98.3 1.3E-05 2.9E-10 89.9 15.2 149 370-533 117-265 (906)
167 PF09976 TPR_21: Tetratricopep 98.2 9.9E-06 2.1E-10 72.4 11.0 94 370-476 49-145 (145)
168 PF13371 TPR_9: Tetratricopept 98.2 2.5E-06 5.5E-11 66.3 6.1 62 376-442 2-63 (73)
169 KOG2376 Signal recognition par 98.2 3E-05 6.4E-10 81.0 15.4 154 373-532 83-265 (652)
170 KOG4234 TPR repeat-containing 98.2 1.6E-05 3.5E-10 72.3 11.5 101 371-484 97-202 (271)
171 PLN03098 LPA1 LOW PSII ACCUMUL 98.2 5.1E-06 1.1E-10 85.4 9.4 63 450-520 76-141 (453)
172 PF14559 TPR_19: Tetratricopep 98.2 4.3E-06 9.3E-11 64.0 6.7 67 413-499 1-67 (68)
173 KOG4555 TPR repeat-containing 98.2 2.5E-05 5.4E-10 66.2 11.4 105 406-526 46-150 (175)
174 PF12569 NARP1: NMDA receptor- 98.2 3E-05 6.6E-10 83.1 14.8 137 371-521 196-335 (517)
175 KOG2076 RNA polymerase III tra 98.2 3.7E-05 8.1E-10 83.9 15.3 111 403-533 139-249 (895)
176 KOG1127 TPR repeat-containing 98.2 4.3E-06 9.2E-11 91.6 7.9 200 307-520 497-700 (1238)
177 PF04733 Coatomer_E: Coatomer 98.2 3.8E-06 8.3E-11 83.9 7.0 136 373-533 106-243 (290)
178 KOG1130 Predicted G-alpha GTPa 98.1 4.9E-06 1.1E-10 83.1 7.2 127 372-506 20-150 (639)
179 PRK11906 transcriptional regul 98.1 6.2E-05 1.3E-09 77.7 13.9 132 368-520 294-436 (458)
180 KOG0545 Aryl-hydrocarbon recep 98.1 0.00015 3.3E-09 68.1 14.7 117 404-528 179-301 (329)
181 COG3071 HemY Uncharacterized e 98.0 0.00017 3.7E-09 72.3 14.7 129 368-520 262-390 (400)
182 KOG1941 Acetylcholine receptor 98.0 4.7E-05 1E-09 75.2 10.5 147 371-521 124-276 (518)
183 KOG3785 Uncharacterized conser 97.9 0.0001 2.2E-09 72.6 12.0 149 374-530 62-224 (557)
184 PF09295 ChAPs: ChAPs (Chs5p-A 97.9 6.4E-05 1.4E-09 77.8 11.3 97 368-476 199-295 (395)
185 PLN03218 maturation of RBCL 1; 97.9 0.00035 7.6E-09 81.4 18.5 58 374-431 584-642 (1060)
186 KOG2376 Signal recognition par 97.9 0.00013 2.8E-09 76.3 13.1 133 370-526 13-145 (652)
187 PF06552 TOM20_plant: Plant sp 97.9 7.1E-05 1.5E-09 67.5 9.8 64 463-534 49-123 (186)
188 PLN03218 maturation of RBCL 1; 97.9 0.00046 1E-08 80.4 18.3 130 371-519 616-747 (1060)
189 KOG2796 Uncharacterized conser 97.9 0.00025 5.5E-09 67.3 13.1 142 371-526 179-321 (366)
190 PRK04841 transcriptional regul 97.9 0.00015 3.3E-09 84.6 14.5 142 373-521 456-603 (903)
191 COG4700 Uncharacterized protei 97.8 0.00076 1.6E-08 61.0 14.3 130 379-526 66-195 (251)
192 PRK10153 DNA-binding transcrip 97.8 0.00012 2.6E-09 78.9 11.2 84 387-484 402-487 (517)
193 PLN03081 pentatricopeptide (PP 97.8 0.0005 1.1E-08 77.8 15.8 126 372-519 293-419 (697)
194 PLN03081 pentatricopeptide (PP 97.8 0.00029 6.3E-09 79.8 13.8 141 371-531 393-534 (697)
195 COG3118 Thioredoxin domain-con 97.8 0.0014 3E-08 63.8 16.2 148 370-538 135-285 (304)
196 KOG3081 Vesicle coat complex C 97.7 0.00085 1.9E-08 64.1 13.9 134 372-532 111-248 (299)
197 KOG1586 Protein required for f 97.7 0.00069 1.5E-08 63.4 13.0 152 368-526 72-230 (288)
198 PRK04841 transcriptional regul 97.7 0.00055 1.2E-08 79.9 15.8 142 373-521 495-642 (903)
199 PF13431 TPR_17: Tetratricopep 97.7 3.5E-05 7.5E-10 50.2 3.2 34 391-424 1-34 (34)
200 KOG4642 Chaperone-dependent E3 97.7 0.00031 6.8E-09 65.9 10.4 100 368-479 9-108 (284)
201 KOG3785 Uncharacterized conser 97.7 0.00016 3.4E-09 71.3 8.6 136 377-526 30-186 (557)
202 PLN03077 Protein ECB2; Provisi 97.7 0.0011 2.3E-08 77.0 17.0 144 370-534 555-700 (857)
203 KOG0551 Hsp90 co-chaperone CNS 97.7 0.0003 6.4E-09 69.0 10.2 114 402-531 80-193 (390)
204 COG2976 Uncharacterized protei 97.7 0.0036 7.9E-08 57.3 16.4 134 372-524 56-192 (207)
205 KOG4340 Uncharacterized conser 97.7 0.00048 1E-08 66.5 11.3 143 370-520 45-207 (459)
206 PF10300 DUF3808: Protein of u 97.6 0.00045 9.7E-09 73.9 12.3 124 383-521 247-377 (468)
207 PF13428 TPR_14: Tetratricopep 97.6 6.5E-05 1.4E-09 52.1 3.9 43 369-411 1-43 (44)
208 PF06552 TOM20_plant: Plant sp 97.6 0.00027 5.9E-09 63.8 8.3 87 385-484 7-114 (186)
209 COG0457 NrfG FOG: TPR repeat [ 97.6 0.0044 9.5E-08 57.4 16.8 140 368-525 94-236 (291)
210 PF13428 TPR_14: Tetratricopep 97.6 0.00023 5E-09 49.3 5.9 42 492-533 2-43 (44)
211 KOG4642 Chaperone-dependent E3 97.6 0.00016 3.4E-09 67.8 6.4 95 406-520 13-107 (284)
212 KOG0376 Serine-threonine phosp 97.6 8E-05 1.7E-09 76.5 4.7 111 371-501 6-116 (476)
213 COG4105 ComL DNA uptake lipopr 97.5 0.0056 1.2E-07 58.6 16.7 148 367-525 69-237 (254)
214 KOG2610 Uncharacterized conser 97.5 0.0015 3.3E-08 64.2 12.6 123 377-515 111-233 (491)
215 PF04184 ST7: ST7 protein; In 97.5 0.00082 1.8E-08 69.6 11.3 138 374-519 173-323 (539)
216 COG3071 HemY Uncharacterized e 97.5 0.0059 1.3E-07 61.6 16.6 137 371-526 86-222 (400)
217 PF00515 TPR_1: Tetratricopept 97.4 0.00026 5.6E-09 45.9 4.5 33 492-524 2-34 (34)
218 PLN03077 Protein ECB2; Provisi 97.4 0.0023 5.1E-08 74.2 14.9 130 374-525 529-658 (857)
219 PF05843 Suf: Suppressor of fo 97.4 0.0036 7.8E-08 62.4 13.8 143 374-533 6-149 (280)
220 PF07719 TPR_2: Tetratricopept 97.3 0.00047 1E-08 44.5 4.8 33 492-524 2-34 (34)
221 COG4785 NlpI Lipoprotein NlpI, 97.3 0.0008 1.7E-08 62.3 7.8 104 403-526 65-168 (297)
222 PF03704 BTAD: Bacterial trans 97.3 0.0027 5.9E-08 56.5 11.3 113 374-519 11-124 (146)
223 KOG2053 Mitochondrial inherita 97.3 0.0023 4.9E-08 70.3 12.5 135 378-533 18-153 (932)
224 KOG1070 rRNA processing protei 97.3 0.0083 1.8E-07 68.8 17.0 130 374-521 1535-1664(1710)
225 COG0457 NrfG FOG: TPR repeat [ 97.3 0.006 1.3E-07 56.5 14.0 126 378-523 139-268 (291)
226 KOG0376 Serine-threonine phosp 97.3 0.00046 9.9E-09 71.1 6.0 108 406-533 7-114 (476)
227 KOG1941 Acetylcholine receptor 97.2 0.0035 7.6E-08 62.3 11.0 141 371-519 208-359 (518)
228 KOG3081 Vesicle coat complex C 97.2 0.0083 1.8E-07 57.5 13.2 132 375-528 143-279 (299)
229 PF07719 TPR_2: Tetratricopept 97.2 0.0011 2.4E-08 42.7 5.2 30 403-432 1-30 (34)
230 PF00515 TPR_1: Tetratricopept 97.2 0.00082 1.8E-08 43.5 4.5 30 403-432 1-30 (34)
231 KOG4340 Uncharacterized conser 97.1 0.0046 9.9E-08 60.0 10.7 129 374-516 117-266 (459)
232 PF13431 TPR_17: Tetratricopep 97.1 0.00036 7.9E-09 45.3 2.3 34 471-512 1-34 (34)
233 KOG1585 Protein required for f 97.1 0.0084 1.8E-07 56.7 12.0 136 373-517 35-176 (308)
234 KOG1308 Hsp70-interacting prot 97.1 0.00059 1.3E-08 67.3 4.4 125 374-519 119-243 (377)
235 KOG0545 Aryl-hydrocarbon recep 97.0 0.0079 1.7E-07 56.8 11.4 100 371-483 180-297 (329)
236 KOG2471 TPR repeat-containing 97.0 0.0033 7.1E-08 64.7 9.5 157 374-533 211-377 (696)
237 PF12968 DUF3856: Domain of Un 96.9 0.017 3.7E-07 48.4 11.3 104 374-478 14-129 (144)
238 PF13181 TPR_8: Tetratricopept 96.9 0.0018 3.8E-08 41.8 4.0 33 492-524 2-34 (34)
239 KOG0551 Hsp90 co-chaperone CNS 96.8 0.027 5.8E-07 55.6 13.6 96 372-479 84-183 (390)
240 COG3898 Uncharacterized membra 96.8 0.34 7.4E-06 49.1 21.0 22 297-318 51-72 (531)
241 KOG1915 Cell cycle control pro 96.8 0.061 1.3E-06 55.6 16.0 163 362-542 315-487 (677)
242 COG4649 Uncharacterized protei 96.7 0.17 3.8E-06 45.5 16.7 147 371-533 60-208 (221)
243 KOG2471 TPR repeat-containing 96.7 0.002 4.3E-08 66.3 5.2 128 368-503 239-381 (696)
244 PF12968 DUF3856: Domain of Un 96.7 0.027 5.9E-07 47.2 10.8 108 410-520 16-129 (144)
245 KOG1915 Cell cycle control pro 96.7 0.024 5.3E-07 58.4 12.7 131 372-523 76-206 (677)
246 PF14853 Fis1_TPR_C: Fis1 C-te 96.7 0.0088 1.9E-07 43.1 7.0 43 492-534 2-44 (53)
247 KOG1586 Protein required for f 96.7 0.026 5.6E-07 53.1 11.8 149 369-526 33-189 (288)
248 KOG2300 Uncharacterized conser 96.7 0.063 1.4E-06 55.6 15.4 138 374-521 328-475 (629)
249 KOG1070 rRNA processing protei 96.6 0.043 9.3E-07 63.3 14.9 133 385-529 1440-1604(1710)
250 PF13281 DUF4071: Domain of un 96.5 0.062 1.4E-06 55.1 14.2 149 369-531 179-345 (374)
251 KOG2796 Uncharacterized conser 96.5 0.026 5.7E-07 54.0 10.6 104 368-484 211-320 (366)
252 PF10602 RPN7: 26S proteasome 96.4 0.035 7.7E-07 51.2 10.6 106 403-519 36-141 (177)
253 PF13181 TPR_8: Tetratricopept 96.3 0.0079 1.7E-07 38.7 4.4 29 404-432 2-30 (34)
254 PF09986 DUF2225: Uncharacteri 96.3 0.085 1.8E-06 50.2 12.8 105 414-525 88-199 (214)
255 PF13174 TPR_6: Tetratricopept 96.2 0.0075 1.6E-07 38.4 3.9 33 492-524 1-33 (33)
256 PF13176 TPR_7: Tetratricopept 96.1 0.011 2.4E-07 38.8 4.4 28 405-432 1-28 (36)
257 PF14561 TPR_20: Tetratricopep 96.0 0.061 1.3E-06 43.6 9.0 77 388-474 7-83 (90)
258 PF09613 HrpB1_HrpK: Bacterial 96.0 0.26 5.6E-06 44.2 13.6 96 370-478 11-106 (160)
259 PF05843 Suf: Suppressor of fo 96.0 0.051 1.1E-06 54.2 10.4 101 405-525 3-104 (280)
260 KOG1550 Extracellular protein 96.0 0.14 3.1E-06 56.2 14.6 130 368-521 243-394 (552)
261 KOG3617 WD40 and TPR repeat-co 96.0 0.025 5.5E-07 61.7 8.4 115 373-520 862-996 (1416)
262 PF04184 ST7: ST7 protein; In 96.0 0.18 3.8E-06 52.9 14.1 114 403-533 259-388 (539)
263 COG2976 Uncharacterized protei 96.0 0.048 1E-06 50.1 8.9 94 373-479 93-189 (207)
264 KOG1585 Protein required for f 95.9 0.11 2.3E-06 49.5 11.2 140 374-521 76-220 (308)
265 PF13176 TPR_7: Tetratricopept 95.9 0.014 3.1E-07 38.3 4.0 29 493-521 1-29 (36)
266 PF13374 TPR_10: Tetratricopep 95.9 0.02 4.2E-07 38.6 4.8 39 403-441 2-40 (42)
267 KOG1308 Hsp70-interacting prot 95.9 0.0042 9.1E-08 61.5 1.9 93 409-521 120-212 (377)
268 PF10300 DUF3808: Protein of u 95.8 0.035 7.6E-07 59.5 8.9 97 372-479 270-377 (468)
269 PF02259 FAT: FAT domain; Int 95.8 0.3 6.6E-06 50.0 15.7 147 369-523 146-341 (352)
270 PF03704 BTAD: Bacterial trans 95.8 0.035 7.7E-07 49.2 7.7 63 371-433 64-126 (146)
271 PF13174 TPR_6: Tetratricopept 95.7 0.023 5E-07 36.0 4.4 29 404-432 1-29 (33)
272 KOG2053 Mitochondrial inherita 95.7 0.13 2.8E-06 57.2 12.4 95 414-529 20-114 (932)
273 PRK15180 Vi polysaccharide bio 95.7 0.09 2E-06 54.3 10.5 128 378-525 298-425 (831)
274 COG3898 Uncharacterized membra 95.6 0.57 1.2E-05 47.6 15.7 133 378-523 163-295 (531)
275 KOG3824 Huntingtin interacting 95.6 0.036 7.9E-07 54.1 7.1 65 373-442 120-184 (472)
276 KOG3824 Huntingtin interacting 95.6 0.037 8E-07 54.1 6.9 68 456-531 123-190 (472)
277 KOG2047 mRNA splicing factor [ 95.5 0.19 4.1E-06 53.9 12.5 145 368-521 385-541 (835)
278 KOG2300 Uncharacterized conser 95.4 0.17 3.7E-06 52.5 11.4 144 368-521 366-515 (629)
279 PF04781 DUF627: Protein of un 95.4 0.1 2.2E-06 43.6 8.1 95 375-481 2-110 (111)
280 KOG4507 Uncharacterized conser 95.4 0.045 9.7E-07 57.8 7.3 106 409-533 613-718 (886)
281 KOG3364 Membrane protein invol 95.3 0.23 5E-06 42.9 10.2 77 451-533 34-113 (149)
282 KOG2047 mRNA splicing factor [ 95.3 0.73 1.6E-05 49.7 15.8 139 378-526 356-512 (835)
283 PF07079 DUF1347: Protein of u 95.2 1.2 2.5E-05 46.3 16.5 129 373-516 383-520 (549)
284 KOG2610 Uncharacterized conser 95.1 0.62 1.3E-05 46.4 13.8 109 406-530 106-214 (491)
285 PRK10941 hypothetical protein; 95.0 0.23 4.9E-06 49.0 10.9 71 451-529 183-253 (269)
286 smart00028 TPR Tetratricopepti 95.0 0.04 8.7E-07 33.7 3.9 33 492-524 2-34 (34)
287 PF04910 Tcf25: Transcriptiona 95.0 0.46 1E-05 49.1 13.7 145 368-526 39-228 (360)
288 PF09986 DUF2225: Uncharacteri 95.0 0.28 6.1E-06 46.7 11.0 91 383-479 91-195 (214)
289 PF12862 Apc5: Anaphase-promot 94.8 0.19 4.1E-06 41.1 8.3 65 412-479 7-71 (94)
290 COG0790 FOG: TPR repeat, SEL1 94.8 1.1 2.3E-05 44.8 15.4 138 369-531 73-229 (292)
291 TIGR02561 HrpB1_HrpK type III 94.7 0.85 1.8E-05 40.3 12.3 62 371-432 12-73 (153)
292 PF10602 RPN7: 26S proteasome 94.7 0.34 7.3E-06 44.7 10.5 103 371-479 38-143 (177)
293 KOG3364 Membrane protein invol 94.6 0.43 9.4E-06 41.2 9.9 72 402-484 31-105 (149)
294 PF09613 HrpB1_HrpK: Bacterial 94.5 0.67 1.5E-05 41.5 11.5 84 404-507 11-94 (160)
295 PF04910 Tcf25: Transcriptiona 94.4 1 2.2E-05 46.6 14.4 119 391-517 28-165 (360)
296 COG0790 FOG: TPR repeat, SEL1 94.4 1.4 3.1E-05 43.8 15.4 132 368-524 108-270 (292)
297 smart00028 TPR Tetratricopepti 94.4 0.077 1.7E-06 32.3 4.0 29 404-432 2-30 (34)
298 PF08424 NRDE-2: NRDE-2, neces 94.3 0.63 1.4E-05 47.3 12.6 127 385-521 47-184 (321)
299 PF08631 SPO22: Meiosis protei 94.3 3 6.5E-05 41.4 17.1 135 379-521 3-151 (278)
300 KOG4814 Uncharacterized conser 94.3 0.49 1.1E-05 50.8 11.5 101 406-520 357-457 (872)
301 PF02259 FAT: FAT domain; Int 94.3 0.76 1.6E-05 47.0 13.3 131 399-538 142-305 (352)
302 PF10579 Rapsyn_N: Rapsyn N-te 94.1 0.32 7E-06 37.8 7.4 65 370-434 7-74 (80)
303 KOG1839 Uncharacterized protei 94.1 0.43 9.3E-06 55.4 11.6 150 368-521 931-1087(1236)
304 PF14853 Fis1_TPR_C: Fis1 C-te 94.0 0.12 2.5E-06 37.3 4.6 40 371-410 3-42 (53)
305 PF08631 SPO22: Meiosis protei 94.0 0.35 7.7E-06 48.1 9.8 110 413-526 3-122 (278)
306 PRK13184 pknD serine/threonine 93.9 0.51 1.1E-05 54.4 11.7 103 409-529 481-590 (932)
307 COG4976 Predicted methyltransf 93.8 0.075 1.6E-06 50.0 4.2 62 457-526 3-64 (287)
308 PRK10941 hypothetical protein; 93.7 0.33 7.1E-06 47.8 8.8 64 374-442 186-249 (269)
309 KOG3807 Predicted membrane pro 93.7 2 4.4E-05 42.8 13.9 57 374-432 189-245 (556)
310 KOG4507 Uncharacterized conser 93.7 0.45 9.8E-06 50.6 10.0 120 390-527 200-319 (886)
311 PF14561 TPR_20: Tetratricopep 93.6 1.2 2.6E-05 36.0 10.5 76 422-515 7-82 (90)
312 PF13374 TPR_10: Tetratricopep 93.5 0.16 3.4E-06 34.0 4.4 31 491-521 2-32 (42)
313 PF13281 DUF4071: Domain of un 93.5 1.1 2.5E-05 46.0 12.4 124 367-510 139-278 (374)
314 KOG3617 WD40 and TPR repeat-co 93.2 0.76 1.6E-05 50.8 10.9 123 374-518 805-939 (1416)
315 COG3914 Spy Predicted O-linked 93.0 1.6 3.4E-05 46.8 12.7 140 378-531 39-182 (620)
316 PF12862 Apc5: Anaphase-promot 92.2 0.49 1.1E-05 38.6 6.4 62 459-521 8-71 (94)
317 COG4976 Predicted methyltransf 92.1 0.16 3.4E-06 47.9 3.6 60 378-442 4-63 (287)
318 TIGR02561 HrpB1_HrpK type III 92.1 2.3 4.9E-05 37.6 10.6 83 405-507 12-94 (153)
319 KOG1550 Extracellular protein 91.5 3.3 7.2E-05 45.5 13.9 124 371-520 290-426 (552)
320 COG2909 MalT ATP-dependent tra 91.5 5.5 0.00012 44.9 15.2 114 402-521 414-527 (894)
321 TIGR03362 VI_chp_7 type VI sec 91.5 13 0.00028 37.4 16.7 135 380-520 110-279 (301)
322 PF10345 Cohesin_load: Cohesin 91.3 2.9 6.2E-05 46.6 13.4 141 368-518 58-206 (608)
323 COG1422 Predicted membrane pro 91.1 0.61 1.3E-05 43.0 6.3 91 120-215 44-147 (201)
324 KOG1310 WD40 repeat protein [G 91.0 0.62 1.3E-05 49.0 7.0 98 374-484 379-479 (758)
325 PF10345 Cohesin_load: Cohesin 91.0 5.3 0.00012 44.5 15.0 126 387-521 39-169 (608)
326 COG4455 ImpE Protein of avirul 90.8 3.5 7.5E-05 38.9 10.9 62 376-442 8-69 (273)
327 COG5187 RPN7 26S proteasome re 90.5 3.8 8.2E-05 40.2 11.2 124 385-519 91-220 (412)
328 PF07721 TPR_4: Tetratricopept 90.4 0.41 8.8E-06 28.7 3.1 24 404-427 2-25 (26)
329 COG2909 MalT ATP-dependent tra 90.2 4 8.8E-05 45.9 12.7 130 368-506 414-552 (894)
330 PF10579 Rapsyn_N: Rapsyn N-te 89.9 2 4.2E-05 33.6 7.2 62 454-520 11-72 (80)
331 KOG0530 Protein farnesyltransf 89.8 15 0.00033 35.7 14.5 131 370-520 43-176 (318)
332 KOG3783 Uncharacterized conser 89.7 7.8 0.00017 41.3 13.7 74 451-525 451-525 (546)
333 KOG2581 26S proteasome regulat 89.4 7.6 0.00017 39.9 12.8 139 377-525 134-281 (493)
334 PF07721 TPR_4: Tetratricopept 89.4 0.51 1.1E-05 28.3 3.0 25 492-516 2-26 (26)
335 KOG0546 HSP90 co-chaperone CPR 89.4 0.61 1.3E-05 46.8 5.2 75 451-533 277-351 (372)
336 KOG1839 Uncharacterized protei 89.2 1.7 3.7E-05 50.8 9.2 143 373-519 977-1127(1236)
337 KOG2396 HAT (Half-A-TPR) repea 89.2 5.7 0.00012 41.9 12.1 91 421-531 89-180 (568)
338 PF04781 DUF627: Protein of un 89.2 4.5 9.7E-05 33.9 9.3 96 409-521 2-108 (111)
339 KOG2396 HAT (Half-A-TPR) repea 89.1 17 0.00036 38.6 15.4 85 388-485 90-175 (568)
340 COG3118 Thioredoxin domain-con 89.0 7.3 0.00016 38.5 12.2 130 368-516 167-297 (304)
341 PF07079 DUF1347: Protein of u 88.8 13 0.00028 39.0 14.2 135 372-519 9-156 (549)
342 COG3914 Spy Predicted O-linked 88.8 7.7 0.00017 41.8 13.0 103 375-484 73-176 (620)
343 KOG4814 Uncharacterized conser 88.7 15 0.00032 40.1 14.9 74 451-526 356-429 (872)
344 PF08424 NRDE-2: NRDE-2, neces 88.5 13 0.00029 37.7 14.5 112 389-520 5-131 (321)
345 KOG0687 26S proteasome regulat 88.1 5.1 0.00011 39.9 10.4 107 402-519 103-209 (393)
346 KOG2041 WD40 repeat protein [G 88.1 2.4 5.2E-05 46.2 8.8 81 403-515 796-876 (1189)
347 KOG1310 WD40 repeat protein [G 87.8 2.3 4.9E-05 45.0 8.2 97 410-526 381-480 (758)
348 PF10516 SHNi-TPR: SHNi-TPR; 87.7 1.6 3.6E-05 28.9 4.8 30 404-433 2-31 (38)
349 PF11817 Foie-gras_1: Foie gra 87.5 4.2 9.1E-05 39.6 9.8 84 387-476 156-245 (247)
350 KOG3616 Selective LIM binding 86.9 2.2 4.8E-05 46.7 7.7 122 374-518 770-909 (1636)
351 KOG2422 Uncharacterized conser 86.6 17 0.00038 39.1 13.9 136 368-523 283-451 (665)
352 KOG1497 COP9 signalosome, subu 86.5 8.6 0.00019 38.3 10.9 111 403-520 103-213 (399)
353 COG3629 DnrI DNA-binding trans 86.5 3.9 8.4E-05 40.4 8.8 61 451-519 155-215 (280)
354 PF04053 Coatomer_WDAD: Coatom 86.2 3.8 8.3E-05 43.5 9.2 108 368-516 320-427 (443)
355 PF11817 Foie-gras_1: Foie gra 86.1 4.7 0.0001 39.3 9.2 66 451-518 180-245 (247)
356 PRK13184 pknD serine/threonine 86.0 7.3 0.00016 45.2 11.9 137 374-526 480-626 (932)
357 PF11421 Synthase_beta: ATP sy 85.5 0.62 1.3E-05 32.0 1.8 15 1-15 1-15 (49)
358 TIGR03504 FimV_Cterm FimV C-te 85.3 1.8 3.8E-05 29.8 4.1 26 494-519 2-27 (44)
359 PF10255 Paf67: RNA polymerase 84.8 13 0.00028 38.9 12.0 131 387-519 57-192 (404)
360 COG2912 Uncharacterized conser 83.8 3.4 7.4E-05 40.3 6.9 64 374-442 186-249 (269)
361 PF09670 Cas_Cas02710: CRISPR- 83.4 27 0.00058 36.4 13.9 59 374-432 136-198 (379)
362 PF15015 NYD-SP12_N: Spermatog 83.2 6.1 0.00013 40.8 8.5 58 453-518 232-289 (569)
363 PF07720 TPR_3: Tetratricopept 83.2 3.7 8E-05 26.9 4.8 33 492-524 2-36 (36)
364 COG2912 Uncharacterized conser 83.1 5.6 0.00012 38.9 8.0 70 451-528 183-252 (269)
365 KOG1538 Uncharacterized conser 82.9 6.1 0.00013 42.9 8.7 113 374-517 708-830 (1081)
366 COG3629 DnrI DNA-binding trans 82.7 4.5 9.8E-05 39.9 7.3 62 371-432 155-216 (280)
367 PF07163 Pex26: Pex26 protein; 82.6 27 0.00058 34.4 12.2 128 374-515 40-182 (309)
368 PF10516 SHNi-TPR: SHNi-TPR; 82.4 2.5 5.5E-05 28.1 3.8 30 492-521 2-31 (38)
369 PF10952 DUF2753: Protein of u 81.5 15 0.00033 31.3 8.9 78 406-484 4-88 (140)
370 PF10373 EST1_DNA_bind: Est1 D 81.2 3.4 7.5E-05 40.6 6.2 62 388-461 1-62 (278)
371 PF15015 NYD-SP12_N: Spermatog 81.2 5.8 0.00013 40.9 7.5 91 374-476 181-289 (569)
372 KOG1914 mRNA cleavage and poly 81.0 45 0.00097 35.9 14.1 65 367-432 18-82 (656)
373 PF11207 DUF2989: Protein of u 80.7 12 0.00026 34.9 9.0 86 376-470 113-199 (203)
374 COG4941 Predicted RNA polymera 80.7 52 0.0011 33.3 13.7 136 379-533 266-407 (415)
375 COG4649 Uncharacterized protei 80.4 44 0.00095 30.6 11.9 101 371-484 96-200 (221)
376 KOG1464 COP9 signalosome, subu 79.6 8.4 0.00018 37.5 7.7 128 381-520 39-174 (440)
377 PF07720 TPR_3: Tetratricopept 79.5 7 0.00015 25.6 5.1 29 404-432 2-32 (36)
378 KOG3616 Selective LIM binding 79.3 7.2 0.00016 42.9 7.9 78 408-514 770-847 (1636)
379 COG4455 ImpE Protein of avirul 78.9 10 0.00023 35.8 7.9 64 457-528 9-72 (273)
380 KOG1258 mRNA processing protei 78.8 44 0.00095 36.3 13.5 120 374-512 302-421 (577)
381 KOG1914 mRNA cleavage and poly 78.1 74 0.0016 34.3 14.5 75 459-542 411-488 (656)
382 KOG1258 mRNA processing protei 78.0 24 0.00052 38.2 11.3 130 379-527 265-402 (577)
383 KOG0985 Vesicle coat protein c 77.8 48 0.001 38.4 13.7 60 368-432 1103-1162(1666)
384 PF10373 EST1_DNA_bind: Est1 D 77.6 6.8 0.00015 38.5 7.0 62 468-537 1-62 (278)
385 PF04053 Coatomer_WDAD: Coatom 77.5 7.3 0.00016 41.5 7.4 54 451-520 349-402 (443)
386 PF01956 DUF106: Integral memb 77.1 9.5 0.00021 34.7 7.2 94 120-214 13-114 (168)
387 KOG2581 26S proteasome regulat 76.7 16 0.00034 37.8 9.0 138 375-529 215-358 (493)
388 KOG0890 Protein kinase of the 76.4 35 0.00075 43.0 13.2 153 368-523 1669-1836(2382)
389 PF14863 Alkyl_sulf_dimr: Alky 75.0 4.9 0.00011 35.5 4.5 53 368-420 69-121 (141)
390 COG5159 RPN6 26S proteasome re 74.7 31 0.00067 34.1 10.0 140 373-519 7-193 (421)
391 TIGR03504 FimV_Cterm FimV C-te 74.4 5.8 0.00013 27.3 3.8 27 406-432 2-28 (44)
392 PRK11619 lytic murein transgly 73.7 29 0.00064 38.9 11.2 125 373-518 245-373 (644)
393 KOG0276 Vesicle coat complex C 73.7 29 0.00063 37.7 10.4 57 368-432 639-695 (794)
394 KOG2422 Uncharacterized conser 73.4 45 0.00098 36.1 11.7 84 399-484 280-377 (665)
395 COG3947 Response regulator con 73.3 23 0.0005 35.0 8.9 56 454-517 284-339 (361)
396 PF11207 DUF2989: Protein of u 73.0 8.6 0.00019 35.9 5.7 56 368-424 140-199 (203)
397 KOG0530 Protein farnesyltransf 72.7 16 0.00035 35.6 7.5 132 384-535 93-231 (318)
398 PF10858 DUF2659: Protein of u 72.6 71 0.0015 28.9 11.0 122 386-521 74-201 (220)
399 COG3947 Response regulator con 72.5 11 0.00024 37.1 6.5 59 374-432 284-342 (361)
400 KOG0890 Protein kinase of the 71.0 31 0.00066 43.4 11.0 124 400-537 1667-1801(2382)
401 KOG1464 COP9 signalosome, subu 70.6 20 0.00043 35.0 7.7 125 374-505 150-286 (440)
402 PF10255 Paf67: RNA polymerase 70.6 17 0.00038 37.9 8.0 70 405-478 124-193 (404)
403 PF12854 PPR_1: PPR repeat 69.8 10 0.00022 24.3 4.0 27 402-428 6-32 (34)
404 KOG0686 COP9 signalosome, subu 68.1 39 0.00084 35.0 9.5 104 403-517 150-255 (466)
405 KOG2561 Adaptor protein NUB1, 66.5 22 0.00049 37.0 7.5 104 373-477 167-295 (568)
406 KOG2041 WD40 repeat protein [G 66.3 35 0.00076 37.7 9.2 27 400-426 849-875 (1189)
407 KOG0529 Protein geranylgeranyl 65.5 1.8E+02 0.0039 30.4 16.2 141 375-535 34-193 (421)
408 smart00386 HAT HAT (Half-A-TPR 65.4 8.6 0.00019 23.4 3.0 30 383-412 1-30 (33)
409 COG5187 RPN7 26S proteasome re 65.1 45 0.00097 33.0 8.9 110 407-524 79-188 (412)
410 PF07219 HemY_N: HemY protein 64.8 49 0.0011 27.5 8.3 48 371-418 61-108 (108)
411 COG5191 Uncharacterized conser 64.8 22 0.00047 35.5 6.8 73 451-531 109-182 (435)
412 COG5191 Uncharacterized conser 64.7 19 0.00041 35.9 6.4 53 380-432 118-171 (435)
413 COG3014 Uncharacterized protei 63.3 27 0.00059 35.2 7.2 42 389-430 41-85 (449)
414 KOG1497 COP9 signalosome, subu 62.3 1.8E+02 0.0039 29.3 14.0 79 438-517 92-170 (399)
415 PF12739 TRAPPC-Trs85: ER-Golg 62.2 85 0.0018 33.1 11.5 30 491-520 300-329 (414)
416 KOG3807 Predicted membrane pro 62.0 54 0.0012 33.0 9.0 27 453-479 279-305 (556)
417 PF12854 PPR_1: PPR repeat 61.7 16 0.00034 23.3 3.7 25 492-516 8-32 (34)
418 KOG3783 Uncharacterized conser 61.5 95 0.0021 33.5 11.2 83 387-479 251-333 (546)
419 KOG1920 IkappaB kinase complex 61.4 25 0.00055 41.1 7.5 64 410-478 959-1028(1265)
420 KOG1463 26S proteasome regulat 60.9 2E+02 0.0043 29.4 12.8 64 454-519 133-196 (411)
421 KOG4151 Myosin assembly protei 60.7 22 0.00048 39.7 6.7 126 386-533 44-169 (748)
422 PRK00247 putative inner membra 60.2 90 0.0019 33.0 10.8 17 103-119 5-21 (429)
423 KOG2561 Adaptor protein NUB1, 59.3 24 0.00053 36.7 6.3 111 407-519 167-295 (568)
424 PF01535 PPR: PPR repeat; Int 59.2 16 0.00034 21.9 3.4 28 493-520 2-29 (31)
425 TIGR02710 CRISPR-associated pr 59.0 1.8E+02 0.0039 30.3 12.6 28 374-401 135-162 (380)
426 PHA02537 M terminase endonucle 58.9 1.7E+02 0.0038 28.1 12.1 113 414-533 94-222 (230)
427 PF12739 TRAPPC-Trs85: ER-Golg 58.5 2.1E+02 0.0046 30.1 13.7 154 368-522 206-401 (414)
428 KOG1463 26S proteasome regulat 58.5 1.2E+02 0.0026 30.8 10.7 153 374-533 133-293 (411)
429 PF04190 DUF410: Protein of un 57.6 87 0.0019 30.7 9.9 96 373-474 14-115 (260)
430 smart00386 HAT HAT (Half-A-TPR 56.9 25 0.00054 21.2 4.1 29 505-533 1-29 (33)
431 COG1747 Uncharacterized N-term 56.4 2.9E+02 0.0063 29.9 16.4 147 370-533 100-247 (711)
432 PF13041 PPR_2: PPR repeat fam 56.3 50 0.0011 22.8 5.9 31 402-432 2-32 (50)
433 KOG0985 Vesicle coat protein c 56.1 78 0.0017 36.8 9.9 55 451-518 1106-1160(1666)
434 KOG2758 Translation initiation 56.1 2.3E+02 0.005 28.6 16.4 147 369-524 129-321 (432)
435 smart00299 CLH Clathrin heavy 55.7 1.3E+02 0.0029 25.8 12.9 120 376-533 14-133 (140)
436 KOG0687 26S proteasome regulat 54.9 88 0.0019 31.6 9.1 101 370-479 105-211 (393)
437 PF13041 PPR_2: PPR repeat fam 53.7 45 0.00099 23.0 5.4 29 451-479 5-33 (50)
438 PF09205 DUF1955: Domain of un 53.4 62 0.0013 28.3 6.8 62 371-432 87-149 (161)
439 PF08626 TRAPPC9-Trs120: Trans 53.2 1.3E+02 0.0027 36.7 12.1 65 463-529 359-443 (1185)
440 KOG0128 RNA-binding protein SA 52.9 1.1E+02 0.0023 34.8 10.3 127 384-521 94-220 (881)
441 KOG0276 Vesicle coat complex C 52.9 1.2E+02 0.0027 33.2 10.4 106 391-517 629-747 (794)
442 PF01535 PPR: PPR repeat; Int 52.9 22 0.00047 21.3 3.2 28 405-432 2-29 (31)
443 PF09205 DUF1955: Domain of un 52.7 61 0.0013 28.3 6.7 55 458-520 95-149 (161)
444 TIGR00756 PPR pentatricopeptid 52.6 30 0.00066 21.1 4.0 28 493-520 2-29 (35)
445 TIGR02710 CRISPR-associated pr 52.1 2E+02 0.0043 29.9 11.7 19 460-478 257-275 (380)
446 PF11846 DUF3366: Domain of un 51.5 60 0.0013 30.0 7.4 50 466-524 128-177 (193)
447 COG1747 Uncharacterized N-term 51.2 1.4E+02 0.003 32.1 10.3 97 400-519 63-159 (711)
448 PRK11619 lytic murein transgly 50.1 2.6E+02 0.0056 31.5 13.2 131 377-517 320-465 (644)
449 KOG2908 26S proteasome regulat 50.0 1.8E+02 0.004 29.5 10.5 102 411-519 83-185 (380)
450 KOG0686 COP9 signalosome, subu 49.8 47 0.001 34.4 6.6 103 371-477 152-257 (466)
451 PF14863 Alkyl_sulf_dimr: Alky 49.7 39 0.00085 29.8 5.4 47 492-538 71-117 (141)
452 PF11846 DUF3366: Domain of un 49.5 30 0.00066 32.0 5.0 44 388-432 130-173 (193)
453 PRK15180 Vi polysaccharide bio 49.5 1.3E+02 0.0029 32.0 9.7 92 414-525 300-391 (831)
454 TIGR00756 PPR pentatricopeptid 49.2 36 0.00077 20.7 3.9 28 405-432 2-29 (35)
455 KOG4056 Translocase of outer m 49.1 38 0.00083 29.4 4.9 53 481-533 71-123 (143)
456 PF10858 DUF2659: Protein of u 47.8 2.2E+02 0.0047 25.9 9.7 102 374-479 98-201 (220)
457 PF04190 DUF410: Protein of un 47.7 2.8E+02 0.0061 27.1 12.8 23 492-514 91-113 (260)
458 cd02680 MIT_calpain7_2 MIT: do 47.4 23 0.00051 27.4 3.2 20 414-433 17-36 (75)
459 cd02682 MIT_AAA_Arch MIT: doma 47.2 39 0.00084 26.2 4.3 29 369-397 6-34 (75)
460 cd02682 MIT_AAA_Arch MIT: doma 47.2 34 0.00074 26.6 4.0 29 405-433 8-36 (75)
461 TIGR00985 3a0801s04tom mitocho 47.1 79 0.0017 28.1 6.8 53 481-533 80-133 (148)
462 COG3014 Uncharacterized protei 46.6 2.3E+02 0.0049 29.0 10.5 59 374-432 63-154 (449)
463 PF13812 PPR_3: Pentatricopept 45.9 51 0.0011 20.1 4.2 29 492-520 2-30 (34)
464 COG5107 RNA14 Pre-mRNA 3'-end 45.7 4E+02 0.0087 28.4 12.6 61 369-432 302-362 (660)
465 PF09797 NatB_MDM20: N-acetylt 45.2 1.4E+02 0.0031 30.7 9.7 45 385-429 199-243 (365)
466 PF08311 Mad3_BUB1_I: Mad3/BUB 44.6 2E+02 0.0044 24.6 11.8 115 389-518 5-126 (126)
467 KOG0529 Protein geranylgeranyl 44.4 3.4E+02 0.0073 28.4 11.7 129 384-528 90-232 (421)
468 cd02680 MIT_calpain7_2 MIT: do 44.4 37 0.0008 26.4 3.8 19 502-520 17-35 (75)
469 PHA02537 M terminase endonucle 44.2 88 0.0019 30.1 7.2 99 379-484 93-212 (230)
470 PF03745 DUF309: Domain of unk 42.7 1.4E+02 0.003 22.2 6.8 56 455-514 5-62 (62)
471 COG5107 RNA14 Pre-mRNA 3'-end 42.1 3.8E+02 0.0082 28.6 11.6 56 377-432 440-495 (660)
472 PF02064 MAS20: MAS20 protein 42.0 81 0.0018 27.0 5.9 46 488-533 60-105 (121)
473 PF10938 YfdX: YfdX protein; 41.7 1.4E+02 0.003 26.7 7.8 69 451-519 77-145 (155)
474 KOG0546 HSP90 co-chaperone CPR 40.8 51 0.0011 33.5 5.2 65 374-443 280-344 (372)
475 COG5159 RPN6 26S proteasome re 40.2 2.1E+02 0.0045 28.5 8.9 101 374-479 130-236 (421)
476 COG2178 Predicted RNA-binding 39.9 3.2E+02 0.0069 25.5 11.3 104 405-516 31-146 (204)
477 PF04212 MIT: MIT (microtubule 39.7 70 0.0015 24.0 4.8 27 406-432 8-34 (69)
478 PLN02294 cytochrome c oxidase 38.7 65 0.0014 29.1 5.0 11 4-14 3-13 (174)
479 COG4259 Uncharacterized protei 36.7 2.3E+02 0.0049 23.4 7.3 42 492-533 73-114 (121)
480 smart00671 SEL1 Sel1-like repe 36.1 74 0.0016 19.7 3.9 29 404-432 2-34 (36)
481 TIGR00985 3a0801s04tom mitocho 36.0 1.9E+02 0.0041 25.7 7.4 43 437-479 78-121 (148)
482 PHA01081 putative minor coat p 36.0 78 0.0017 25.9 4.5 26 116-141 73-100 (104)
483 PF04348 LppC: LppC putative l 35.3 13 0.00027 40.8 0.0 97 406-516 27-123 (536)
484 cd02681 MIT_calpain7_1 MIT: do 33.8 91 0.002 24.2 4.6 27 407-433 10-36 (76)
485 PF08238 Sel1: Sel1 repeat; I 33.7 83 0.0018 20.0 3.9 30 403-432 1-37 (39)
486 PF04212 MIT: MIT (microtubule 33.6 87 0.0019 23.5 4.5 26 494-519 8-33 (69)
487 PF05053 Menin: Menin; InterP 33.3 2.7E+02 0.0059 30.4 9.3 26 492-517 319-344 (618)
488 KOG4459 Membrane-associated pr 33.3 2.8E+02 0.0061 29.3 9.2 43 492-534 134-176 (471)
489 COG5600 Transcription-associat 33.0 4.9E+02 0.011 27.0 10.6 70 454-523 182-252 (413)
490 KOG2114 Vacuolar assembly/sort 32.9 1.5E+02 0.0033 33.7 7.6 29 404-432 369-397 (933)
491 KOG4563 Cell cycle-regulated h 32.1 47 0.001 33.9 3.4 60 454-513 46-105 (400)
492 cd02679 MIT_spastin MIT: domai 31.8 78 0.0017 24.9 3.9 34 463-519 3-36 (79)
493 cd02681 MIT_calpain7_1 MIT: do 31.7 91 0.002 24.2 4.3 25 495-519 10-34 (76)
494 PF13934 ELYS: Nuclear pore co 31.6 4E+02 0.0087 25.4 9.7 118 371-516 43-165 (226)
495 PRK15490 Vi polysaccharide bio 31.6 2.1E+02 0.0046 31.5 8.5 60 366-427 39-98 (578)
496 PRK15490 Vi polysaccharide bio 30.5 1.1E+02 0.0024 33.5 6.2 58 380-442 19-76 (578)
497 KOG2114 Vacuolar assembly/sort 30.5 1.5E+02 0.0032 33.9 7.0 25 373-397 372-396 (933)
498 PRK02201 putative inner membra 30.3 1.6E+02 0.0034 30.4 6.9 30 104-133 109-140 (357)
499 PF08626 TRAPPC9-Trs120: Trans 30.2 4.3E+02 0.0094 32.2 11.7 94 419-520 361-474 (1185)
500 KOG1538 Uncharacterized conser 29.7 5E+02 0.011 29.0 10.6 124 371-513 587-725 (1081)
No 1
>PRK02944 OxaA-like protein precursor; Validated
Probab=100.00 E-value=4.5e-42 Score=332.05 Aligned_cols=207 Identities=21% Similarity=0.323 Sum_probs=178.8
Q ss_pred cHHHHHHHHHHHhhhcCChHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCCCCCCCCCcCc------ccHHHHHH
Q 008887 103 PVRALISFLDTYHDFTGFPWWTIIVSSTVALRIALLPLIVLQLKKIQRIAELLPRLPPPFPPPLSG------KRFVDQIS 176 (550)
Q Consensus 103 p~~~~~~~l~~~h~~~glpw~~~I~~~t~~vRl~~lPl~i~~~~~~~k~~~l~p~l~~~~~~~~~~------~~~~~~~~ 176 (550)
-+.++.++++++|+++|.|||++|+++|+++|++++|++++|+|+++||++++|+++++++||+++ +.++|+++
T Consensus 40 ~~~p~~~~l~~i~~~~g~~wg~aIi~~TiivR~illPl~~~q~~~~~km~~iqPe~~~iq~kyk~~~~~~~~k~~~e~~~ 119 (255)
T PRK02944 40 FVYPLSQLITYFANLFGSNYGLAIIVVTLLIRLLILPLMIKQTKSTKAMQALQPEMQKLKEKYSSKDQATQQKLQQEMMQ 119 (255)
T ss_pred HHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 456778899999999999999999999999999999999999999999999999999999998754 23568899
Q ss_pred HHHHHhhhcCCCchhHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCccCCccccccCCCCCccchhHHHHHHHHHHHHHH
Q 008887 177 LFRREKRAAGCPSLLWFIASFAIQVPCFLVGVTSIRRMSLDGHPGFDCGGIWWFQNLTEYPHGVLGSIFPVLMAGLHYTN 256 (550)
Q Consensus 177 l~kk~~~~~g~~~~~~~~l~~l~q~Pifi~~~~~lr~m~~~~~~~l~~~g~lW~~dLt~~dp~~~~~ilP~~~~~~~~~~ 256 (550)
+|||+ ||+|+.. .+|+++|+|||+++|.++|++. ++.++|++|| ||+.+|| ++|||++++++++++
T Consensus 120 Lyk~~----gvnP~~g-~lp~liQ~Pifi~lf~~i~~~~-----~l~~~~flW~-dLs~~Dp---~~iLPil~~~~~~~~ 185 (255)
T PRK02944 120 LFQKN----GVNPLAG-CLPIFIQMPILIAFYHAIMRTS-----EISKHSFLWF-DLGQADP---YYILPIVAGITTFIQ 185 (255)
T ss_pred HHHHc----CCCchHH-HHHHHHHHHHHHHHHHHHHhhH-----HHhhcCCCcc-ccCcchH---HHHHHHHHHHHHHHH
Confidence 99999 5666543 3899999999999999999986 6788999999 9999999 899999999999999
Q ss_pred HHHhhccCcCCcccchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHhhhhHHHHHHHHHhcCHHHHhhhCCC
Q 008887 257 VQLSFGASSLGKENGLLGLLAKYYKSYLNLMTLPLFFLGYYIPQGSLVYWVTNSSFSIVQQLALKHPASRTMLGLP 332 (550)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~lYw~~s~~~~~~q~~~~~~p~~r~~l~i~ 332 (550)
.+++..... ++ . ..++.+++++++++++++.++|+|+.+||++|++++++|+++.+.|.+|+..+-.
T Consensus 186 ~~~~~~~~~---~~---~---~~~~~m~~i~p~~~~~~~~~~Pagl~lYw~~s~~~~i~Q~~~l~~~~~~~~~~~~ 252 (255)
T PRK02944 186 QKLMMAGTA---GQ---N---PQMAMMLWLMPIMILIFAINFPAALSLYWVVGNIFMIAQTYLIKGPEIKASKAGG 252 (255)
T ss_pred HHhcccCCC---CC---C---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccchhhcCC
Confidence 887543211 11 1 2345677888888888899999999999999999999999999999888876643
No 2
>PRK00145 putative inner membrane protein translocase component YidC; Provisional
Probab=100.00 E-value=3.9e-41 Score=319.78 Aligned_cols=198 Identities=19% Similarity=0.282 Sum_probs=168.5
Q ss_pred HHHHHHhhhcCChHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCCCCCCCCCcCcc--cHHHHHHHHHHHhhhcC
Q 008887 109 SFLDTYHDFTGFPWWTIIVSSTVALRIALLPLIVLQLKKIQRIAELLPRLPPPFPPPLSGK--RFVDQISLFRREKRAAG 186 (550)
Q Consensus 109 ~~l~~~h~~~glpw~~~I~~~t~~vRl~~lPl~i~~~~~~~k~~~l~p~l~~~~~~~~~~~--~~~~~~~l~kk~~~~~g 186 (550)
..+..+|..+|+|||++|+++|+++|++++|++++|+|+++||++++|+++++++|+++++ .++|++++|||+ |
T Consensus 18 ~~~~~~~~~~g~~w~~sIi~~tiivR~~l~Pl~~~q~~~~~km~~iqP~~~~i~~k~k~d~~~~~~e~~~Lyk~~----~ 93 (223)
T PRK00145 18 GFVSSVISNPNFSYGIAIILVTLIIRLLILPLNIKQTKSSLRMNEIQPEIKKLQAKYKNDPQKLQQEMMKLYKEK----G 93 (223)
T ss_pred HHHHHhhccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHccHHHHHHHHHHHHHHh----C
Confidence 3333334446899999999999999999999999999999999999999999999998764 467899999999 6
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCccCCccccccCCCCCccchhHHHHHHHHHHHHHHHHHhhccCcC
Q 008887 187 CPSLLWFIASFAIQVPCFLVGVTSIRRMSLDGHPGFDCGGIWWFQNLTEYPHGVLGSIFPVLMAGLHYTNVQLSFGASSL 266 (550)
Q Consensus 187 ~~~~~~~~l~~l~q~Pifi~~~~~lr~m~~~~~~~l~~~g~lW~~dLt~~dp~~~~~ilP~~~~~~~~~~~~~~~~~~~~ 266 (550)
|+|+.. .+|+++|+|||+++|+++|+++ ++.++|++||+|||.+|| ++|||++++++++++.++..+..
T Consensus 94 inp~~~-~lp~liQiPif~~l~~~i~~~~-----~~~~~~flW~~dLt~~Dp---~~iLPil~~~~~~l~~~~~~~~~-- 162 (223)
T PRK00145 94 VNPLGG-CLPLLIQWPILIALYYVFNNLT-----GINGVSFLWIKDLAKPDI---TWILPILSGATTYLSGYLMTKAD-- 162 (223)
T ss_pred CCchHH-HHHHHHHHHHHHHHHHHHHHhh-----hccCCCccChhhccCcch---HHHHHHHHHHHHHHHHHHcCCCC--
Confidence 666654 3898999999999999999996 688999999999999999 89999999999999998865431
Q ss_pred CcccchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHhhhhHHHHHHHHHhcCHHHHhh
Q 008887 267 GKENGLLGLLAKYYKSYLNLMTLPLFFLGYYIPQGSLVYWVTNSSFSIVQQLALKHPASRTM 328 (550)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~lYw~~s~~~~~~q~~~~~~p~~r~~ 328 (550)
..+ .+.++.+++++++.+++++.++|+|+++||++|++++++|+++.++...++.
T Consensus 163 -~~~------~~~~k~m~~~~~i~~~~~~~~~Pagl~lYW~~s~~~si~Q~~~l~~~~~~~~ 217 (223)
T PRK00145 163 -SSQ------AGQMKTMNIGMSIFMGVMSWKFKSALVLYWVIGNLIQIIQTYFIKKLELKKK 217 (223)
T ss_pred -hhH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhh
Confidence 111 2345667778888888888999999999999999999999999987655543
No 3
>PRK01622 OxaA-like protein precursor; Validated
Probab=100.00 E-value=1e-38 Score=309.21 Aligned_cols=198 Identities=20% Similarity=0.302 Sum_probs=169.3
Q ss_pred HHHHHHHHHHHhhhcCChHHHHHHHHHHHHHHHHHhHHHHHHHH----HHHHHHhCCCCCCCCCCCcCccc-------HH
Q 008887 104 VRALISFLDTYHDFTGFPWWTIIVSSTVALRIALLPLIVLQLKK----IQRIAELLPRLPPPFPPPLSGKR-------FV 172 (550)
Q Consensus 104 ~~~~~~~l~~~h~~~glpw~~~I~~~t~~vRl~~lPl~i~~~~~----~~k~~~l~p~l~~~~~~~~~~~~-------~~ 172 (550)
+.++.++++++|+++|.|||++|+++|+++|++++|++++|+|+ ++||+++||+++++++||+++++ ++
T Consensus 42 ~~p~~~ll~~l~~~~~~~wg~aIil~TiiiR~illPl~i~q~ks~~~~~~km~~iqP~l~~iq~kyk~~~d~~~~~~~~~ 121 (256)
T PRK01622 42 VYPFSFLIQFVAHHIGGSYGIAIIIVTLIIRSLMIPLAVSQYKSQRGMQEKMAVMKPELDKIQAKLKVTKDLEKQKEYQK 121 (256)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhCHHHHHHHHHHhccCCHHHHHHHHH
Confidence 67777899999999999999999999999999999999999999 89999999999999999876533 45
Q ss_pred HHHHHHHHHhhhcCCCchhHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCccCCccccccCCCCCccchhHHHHHHHHHH
Q 008887 173 DQISLFRREKRAAGCPSLLWFIASFAIQVPCFLVGVTSIRRMSLDGHPGFDCGGIWWFQNLTEYPHGVLGSIFPVLMAGL 252 (550)
Q Consensus 173 ~~~~l~kk~~~~~g~~~~~~~~l~~l~q~Pifi~~~~~lr~m~~~~~~~l~~~g~lW~~dLt~~dp~~~~~ilP~~~~~~ 252 (550)
|++++|||+ ||+|+....+|+++|+|||+++|+++|++ |++.++|++|| ||+.+| +|||++++++
T Consensus 122 e~~~Lyk~~----gi~P~~~g~lp~liQ~Pif~~lf~~lr~~-----~~l~~~~flW~-dLs~~D-----~ILPil~~~~ 186 (256)
T PRK01622 122 EMMELYKSG----NINPLAMGCLPLLIQMPILSAFYYAIRRT-----EEIASHSFLWF-NLGHAD-----HILPIIAGLT 186 (256)
T ss_pred HHHHHHHHc----CCCCchhhHHHHHHHHHHHHHHHHHHHhC-----hhccCCCceee-CCcchh-----HHHHHHHHHH
Confidence 778899998 66666534499999999999999999987 47899999999 999987 6999999999
Q ss_pred HHHHHHHhhccCcCCcccchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHhhhhHHHHHHHHHhcCH
Q 008887 253 HYTNVQLSFGASSLGKENGLLGLLAKYYKSYLNLMTLPLFFLGYYIPQGSLVYWVTNSSFSIVQQLALKHP 323 (550)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~lYw~~s~~~~~~q~~~~~~p 323 (550)
++++.+++..... ++. ..+.+|.+++++++++++++.++|+|+++||++|++++++|+++.+..
T Consensus 187 ~~~~~~~~~~~~~----~~~---q~~~~k~m~~~~pi~~~~~~~~~Psgl~lYW~~snl~si~Q~~~l~~~ 250 (256)
T PRK01622 187 YFIQMKVSQSNGT----SPE---QVQMLKIQGIMMPAMILFMSFAAPSALVLYWITGGLFLMGQTIVLRKV 250 (256)
T ss_pred HHHHHHHcCCCCC----ChH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999987663211 111 134566677888888888999999999999999999999999988654
No 4
>TIGR03592 yidC_oxa1_cterm membrane protein insertase, YidC/Oxa1 family, C-terminal domain. This model describes full-length from some species, and the C-terminal region only from other species, of the YidC/Oxa1 family of proteins. This domain appears to be univeral among bacteria (although absent from Archaea). The well-characterized YidC protein from Escherichia coli and its close homologs contain a large N-terminal periplasmic domain in addition to the region modeled here.
Probab=100.00 E-value=1.7e-38 Score=293.70 Aligned_cols=178 Identities=26% Similarity=0.443 Sum_probs=157.9
Q ss_pred hHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCCCCCCCCCcCcc--cHHHHHHHHHHHhhhcCCCchhHHHHHHH
Q 008887 121 PWWTIIVSSTVALRIALLPLIVLQLKKIQRIAELLPRLPPPFPPPLSGK--RFVDQISLFRREKRAAGCPSLLWFIASFA 198 (550)
Q Consensus 121 pw~~~I~~~t~~vRl~~lPl~i~~~~~~~k~~~l~p~l~~~~~~~~~~~--~~~~~~~l~kk~~~~~g~~~~~~~~l~~l 198 (550)
|||++|+++|+++|++++|++++|+|+++||++++|+++++++|+++++ .++|++++|||| ||+|++. ++|++
T Consensus 1 ~w~~sIi~~ti~vR~~~~Pl~~~~~~~~~km~~i~P~~~~i~~k~k~~~~~~~~e~~~l~k~~----~~~p~~~-~lp~l 75 (181)
T TIGR03592 1 NWGLAIILLTIIVRLLLLPLTLKQYKSMRKMQELQPKLKEIQEKYKDDPQKLQQEMMKLYKEE----GVNPLGG-CLPLL 75 (181)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHHHHHh----CCCcHHH-HHHHH
Confidence 7999999999999999999999999999999999999999999998764 367899999999 7877765 48889
Q ss_pred HHHHHHHHHHHHHHhhhcCCCCCCccCCccccccCCCCCccchhHHHHHHHHHHHHHHHHHhhccCcCCcccchhhHHHH
Q 008887 199 IQVPCFLVGVTSIRRMSLDGHPGFDCGGIWWFQNLTEYPHGVLGSIFPVLMAGLHYTNVQLSFGASSLGKENGLLGLLAK 278 (550)
Q Consensus 199 ~q~Pifi~~~~~lr~m~~~~~~~l~~~g~lW~~dLt~~dp~~~~~ilP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (550)
+|+|||+++|.++|++. ++.++|++||+||+.+|| +++||++++++++++.+++..... + .+
T Consensus 76 iQ~Pif~~~~~~lr~~~-----~l~~~~flW~~dL~~~Dp---~~iLPii~~~~~~~~~~~~~~~~~----~------~~ 137 (181)
T TIGR03592 76 IQMPIFIALYQVLRRSI-----ELRHAPFLWIKDLSAPDP---YYILPILMGATMFLQQKLSPSGPP----D------PA 137 (181)
T ss_pred HHHHHHHHHHHHHHhhH-----HhccCCCcCccccCcccH---HHHHHHHHHHHHHHHHHhcCCCCC----C------HH
Confidence 99999999999999984 789999999999999999 899999999999999998765321 1 12
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhHHHHHhhhhHHHHHHHHHhc
Q 008887 279 YYKSYLNLMTLPLFFLGYYIPQGSLVYWVTNSSFSIVQQLALK 321 (550)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~p~~l~lYw~~s~~~~~~q~~~~~ 321 (550)
.+|.+++++++.+++++.++|+|+.+||++|++++++|+++.+
T Consensus 138 ~~k~m~~~~p~~~~~~~~~~pa~l~lYw~~s~~~sl~Q~~~l~ 180 (181)
T TIGR03592 138 QQKIMMYIMPLMFLFFFLSFPAGLVLYWVVSNLFTIIQQLIIN 180 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455677888888888899999999999999999999998875
No 5
>PRK02463 OxaA-like protein precursor; Provisional
Probab=100.00 E-value=2.3e-38 Score=311.78 Aligned_cols=209 Identities=21% Similarity=0.305 Sum_probs=176.4
Q ss_pred cHHHHHHHHHHHhhhcCChHHHHHHHHHHHHHHHHHhHHHHHHHH----HHHHHHhCCCCCCCCCCCcCcc-------cH
Q 008887 103 PVRALISFLDTYHDFTGFPWWTIIVSSTVALRIALLPLIVLQLKK----IQRIAELLPRLPPPFPPPLSGK-------RF 171 (550)
Q Consensus 103 p~~~~~~~l~~~h~~~glpw~~~I~~~t~~vRl~~lPl~i~~~~~----~~k~~~l~p~l~~~~~~~~~~~-------~~ 171 (550)
-+.++.++++++|+++|++||++|+++|++||++++|++++|+++ ++||++++|++++|++||++++ .+
T Consensus 41 l~~p~~~~l~~i~~~~g~~~GlaII~~TiivRlillPL~i~q~~ka~~~~~KM~~lqPe~~~Iq~Kyk~~~~~~~~~~~q 120 (307)
T PRK02463 41 LGAPMSYFIDYFANNLGLGFGLAIIIVTIIVRLIILPLGLYQSWKATYQSEKMAYLKPVFEPINERLKNATTQEEKMAAQ 120 (307)
T ss_pred HHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhHHHHHHHHhcCCChHHHHHHH
Confidence 467788899999999999999999999999999999999988875 6899999999999999988653 25
Q ss_pred HHHHHHHHHHh--hhc--CCCchhHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCccCCccccccCCCCCccchhHHHHH
Q 008887 172 VDQISLFRREK--RAA--GCPSLLWFIASFAIQVPCFLVGVTSIRRMSLDGHPGFDCGGIWWFQNLTEYPHGVLGSIFPV 247 (550)
Q Consensus 172 ~~~~~l~kk~~--~~~--g~~~~~~~~l~~l~q~Pifi~~~~~lr~m~~~~~~~l~~~g~lW~~dLt~~dp~~~~~ilP~ 247 (550)
+|++++|||++ +.. || +|+|+|+|||+++|++++.. |++.+++|+|| ||+.| +++||+
T Consensus 121 ~em~~lyke~ginp~~~~GC-------LP~LIQ~PIf~aly~ai~~~-----~~l~~~~flwi-dL~~p-----~~iLpi 182 (307)
T PRK02463 121 TELMAAQRENGISMLGGIGC-------LPLLIQMPFFSALYFAAQYT-----KGVSTSTFLGI-DLGSP-----SLVLTA 182 (307)
T ss_pred HHHHHHHHHcCCCCccccch-------HHHHHHHHHHHHHHHHHhcc-----hhhccCCeeee-ecCch-----hHHHHH
Confidence 67889999997 443 67 99999999999999999853 68999999999 99865 579999
Q ss_pred HHHHHHHHHHHHhhccCcCCcccchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHhhhhHHHHHHHHHhc---CHH
Q 008887 248 LMAGLHYTNVQLSFGASSLGKENGLLGLLAKYYKSYLNLMTLPLFFLGYYIPQGSLVYWVTNSSFSIVQQLALK---HPA 324 (550)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~lYw~~s~~~~~~q~~~~~---~p~ 324 (550)
+++++++++.+++..... .+ ..+.+|.+++++++++++++.++|+|+.+||++|++++++|+++.+ +|.
T Consensus 183 i~~v~~~~q~~~~~~~~~--~~------q~~~mk~m~~~~Pim~~~~~~~~PagL~lYW~~snlfsi~Q~~i~~~~~~pk 254 (307)
T PRK02463 183 IIGVLYFFQSWLSMMGVP--EE------QREQMKAMMYMMPIMMVVFSFSSPAGVGLYWLVGGFFSIIQQLITTYILKPR 254 (307)
T ss_pred HHHHHHHHHHHHhccCCC--hh------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 999999999987654311 11 1245677889999999999999999999999999999999999865 777
Q ss_pred HHhhhCCCCCCCC
Q 008887 325 SRTMLGLPDKVVP 337 (550)
Q Consensus 325 ~r~~l~i~~~~~~ 337 (550)
+|+.+.-....+|
T Consensus 255 ~~~~i~~e~~~~p 267 (307)
T PRK02463 255 LRKQIAEEFAKNP 267 (307)
T ss_pred HHHHHHHHhhcCC
Confidence 7776655444444
No 6
>PF02096 60KD_IMP: 60Kd inner membrane protein; InterPro: IPR001708 This family of proteins is required for the insertion of integral membrane proteins into cellular membranes. Many of these integral membrane proteins are associated with respiratory chain complexes, for example a large number of members of this family play an essential role in the activity and assembly of cytochrome c oxidase. Stage III sporulation protein J (SP3J) is a probable lipoprotein, rich in basic and hydrophobic amino acids. Mutations in the protein abolish the transcription of prespore-specific genes transcribed by the sigma G form of RNA polymerase []. SP3J could be involved in a signal transduction pathway coupling gene expression in the prespore to events in the mother cell, or it may be necessary for essential metabolic interactions between the two cells []. The protein shows a high degree of similarity to Bacillus subtilis YQJG, to yeast OXA1 and also to bacterial 60 kDa inner-membrane proteins [, , , ]. ; GO: 0051205 protein insertion into membrane, 0016021 integral to membrane
Probab=100.00 E-value=1.7e-38 Score=300.02 Aligned_cols=188 Identities=29% Similarity=0.491 Sum_probs=164.4
Q ss_pred hHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCCCCCCCCCcCcc--cHHHHHHHHHHHhhhcCCCchhHHHHHHH
Q 008887 121 PWWTIIVSSTVALRIALLPLIVLQLKKIQRIAELLPRLPPPFPPPLSGK--RFVDQISLFRREKRAAGCPSLLWFIASFA 198 (550)
Q Consensus 121 pw~~~I~~~t~~vRl~~lPl~i~~~~~~~k~~~l~p~l~~~~~~~~~~~--~~~~~~~l~kk~~~~~g~~~~~~~~l~~l 198 (550)
+||++|+++|+++|++++|++++++|+++||++++|+++++++|+++++ .++|++++|||| ||+|++. ++|++
T Consensus 2 sW~~aIil~ti~vR~~~~Pl~i~~~~~~~k~~~~~P~l~~i~~k~~~~~~~~~~~~~~l~k~~----~~~p~~~-~~~~l 76 (198)
T PF02096_consen 2 SWGLAIILTTILVRLILLPLSIKQQRSSAKMQELQPELKEIQEKYKEDQQKMQQEMQKLYKKH----GVNPLKG-CLPPL 76 (198)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHc----CCCcHHH-HHHHH
Confidence 8999999999999999999999999999999999999999999996653 467889999998 8888855 47889
Q ss_pred HHHHHHHHHHHHHHhhhcCCCCCCccCCccccccCCCCC-----ccchhHHHHHHHHHHHHHHHHHhhccCcCCcccchh
Q 008887 199 IQVPCFLVGVTSIRRMSLDGHPGFDCGGIWWFQNLTEYP-----HGVLGSIFPVLMAGLHYTNVQLSFGASSLGKENGLL 273 (550)
Q Consensus 199 ~q~Pifi~~~~~lr~m~~~~~~~l~~~g~lW~~dLt~~d-----p~~~~~ilP~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (550)
+|+|||+++|.++|+|+. +|++.++|++||+||+.+| | ++|||++++++++++++++.+ ....+..
T Consensus 77 iq~Pif~~~~~~lr~~~~--~~~~~~~g~lw~~dL~~~D~~~~~p---~~iLPil~~~~~~~~~~~~~~-~~~~~~~--- 147 (198)
T PF02096_consen 77 IQIPIFIGLFRALRRMAE--VPSLATGGFLWFPDLTAPDPTMGLP---YFILPILAGASMFLNQELSMK-NSKQKSP--- 147 (198)
T ss_pred HHHHHHHHHHHHHHHHHH--hcccccCceeChHhcCCCCccchhH---HHHHHHHHHHHHHHHHHHHHh-ccccCCc---
Confidence 999999999999999986 7899999999999999999 7 899999999999999999875 2111111
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHhhhhHHHHHHHHHhcCH
Q 008887 274 GLLAKYYKSYLNLMTLPLFFLGYYIPQGSLVYWVTNSSFSIVQQLALKHP 323 (550)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~lYw~~s~~~~~~q~~~~~~p 323 (550)
...+.+|.+++++++.+++++.++|+|+.+||++|++++++|+.+.+++
T Consensus 148 -~~~~~~k~m~~~~~~~~~~~~~~~Paal~lYw~~s~~~~l~Q~~~l~~~ 196 (198)
T PF02096_consen 148 -QQAKMMKIMLYIMPLMFLFFTSFFPAALFLYWITSNLFSLLQTLILRRP 196 (198)
T ss_pred -cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 1135566677788888888899999999999999999999999998764
No 7
>PRK01318 membrane protein insertase; Provisional
Probab=100.00 E-value=1.4e-38 Score=335.12 Aligned_cols=198 Identities=21% Similarity=0.377 Sum_probs=173.0
Q ss_pred CCCcc--cHHHHHHHHHHHhhhcCChHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCCCCCCCCCcCcc--cHHH
Q 008887 98 EESSL--PVRALISFLDTYHDFTGFPWWTIIVSSTVALRIALLPLIVLQLKKIQRIAELLPRLPPPFPPPLSGK--RFVD 173 (550)
Q Consensus 98 ~~~~~--p~~~~~~~l~~~h~~~glpw~~~I~~~t~~vRl~~lPl~i~~~~~~~k~~~l~p~l~~~~~~~~~~~--~~~~ 173 (550)
+.||. .+.++.++|+++|.++| |||++||++|+++|++++|++++|.|+++||++++|+|++|++|+++++ .++|
T Consensus 298 ~~G~~~~~~~pl~~~L~~i~~~~g-~wg~aIillTiiiR~il~Pl~~~s~~s~~km~~lqP~~~~i~~kyk~d~~k~~~e 376 (521)
T PRK01318 298 DYGWLWFITKPLFWLLDFLHSFVG-NWGWAIILLTIIVKLLLFPLTYKSYVSMAKMKVLQPKMQELKEKYKDDPQKMQQE 376 (521)
T ss_pred ccCcHHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHhHhhHHHHHHH
Confidence 55554 58999999999999999 9999999999999999999999999999999999999999999998775 4689
Q ss_pred HHHHHHHHh--hhcCCCchhHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCccCCcc-ccccCCCCCccchhHHH-----
Q 008887 174 QISLFRREK--RAAGCPSLLWFIASFAIQVPCFLVGVTSIRRMSLDGHPGFDCGGIW-WFQNLTEYPHGVLGSIF----- 245 (550)
Q Consensus 174 ~~~l~kk~~--~~~g~~~~~~~~l~~l~q~Pifi~~~~~lr~m~~~~~~~l~~~g~l-W~~dLt~~dp~~~~~il----- 245 (550)
+|++|||++ +..|| +|+|+|+||||++|.+++++. .+..++|+ ||+||+.+|| ++||
T Consensus 377 ~~~LYKk~~vnPl~gc-------lp~liQiPifialy~~l~~~~-----el~~~~fl~Wi~DLs~~Dp---~~il~~~~l 441 (521)
T PRK01318 377 MMELYKKEKVNPLGGC-------LPILIQIPIFFALYKVLLVSI-----ELRHAPFIGWIHDLSAPDP---YFILHIGLL 441 (521)
T ss_pred HHHHHHHcCCCccchh-------HHHHHHHHHHHHHHHHHHHHH-----HhccCchheeecccccccc---chhHHHHHH
Confidence 999999996 56677 999999999999999999986 57778887 9999999999 7888
Q ss_pred HHHHHHHHHHHHHHhhccCcCCcccchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHhhhhHHHHHHHHHhcCH
Q 008887 246 PVLMAGLHYTNVQLSFGASSLGKENGLLGLLAKYYKSYLNLMTLPLFFLGYYIPQGSLVYWVTNSSFSIVQQLALKHP 323 (550)
Q Consensus 246 P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~lYw~~s~~~~~~q~~~~~~p 323 (550)
|++++++++++.+++... . + + .+++++.+|++++++++.++|+|+++||++|++++++|++++++.
T Consensus 442 Pil~~~~~~~~~~l~~~~--~----~---~---~q~kim~~mpi~~~~~~~~~PagL~lYW~~sn~~si~Q~~~l~~~ 507 (521)
T PRK01318 442 PILMGITMFLQQKLNPTP--T----D---P---MQAKIMKFMPLIFTFFFLSFPAGLVLYWIVNNLLTIIQQYLINRR 507 (521)
T ss_pred HHHHHHHHHHHHHhcCCC--C----C---H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 999999999999887432 1 1 1 123345567888888889999999999999999999999998754
No 8
>PRK01001 putative inner membrane protein translocase component YidC; Provisional
Probab=100.00 E-value=2.9e-38 Score=332.47 Aligned_cols=199 Identities=20% Similarity=0.360 Sum_probs=167.4
Q ss_pred HHHHHHHHhhhcCChHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCCCCCCCCCcCcc--cHHHHHHHHHHHh--
Q 008887 107 LISFLDTYHDFTGFPWWTIIVSSTVALRIALLPLIVLQLKKIQRIAELLPRLPPPFPPPLSGK--RFVDQISLFRREK-- 182 (550)
Q Consensus 107 ~~~~l~~~h~~~glpw~~~I~~~t~~vRl~~lPl~i~~~~~~~k~~~l~p~l~~~~~~~~~~~--~~~~~~~l~kk~~-- 182 (550)
+.+++.++|..+| |||++||++||+||++++||+++|.++++||+.+||+|++|++||++++ .++|+|++|||++
T Consensus 562 L~~ll~~fh~l~G-nwGlAIILlTIIVRLlLlPLtiKS~kSmaKMq~LQPemqeIQeKYKdD~qK~QqEmMkLYKe~GVN 640 (795)
T PRK01001 562 LFIIMKFFKFLTG-SWGISIILLTVFLKLLLYPLNAWSIRSMRRMQKLSPYIQEIQQKYKKEPKRAQMEIMALYKTNKVN 640 (795)
T ss_pred HHHHHHHHHhhcc-hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhHHHHHHHHHhHhHHHHHHHHHHHHHHHcCCC
Confidence 3466688999999 9999999999999999999999999999999999999999999998775 4789999999997
Q ss_pred hhcCCCchhHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCccCCcc--ccccCCCCCccc-----------hhHHHHHHH
Q 008887 183 RAAGCPSLLWFIASFAIQVPCFLVGVTSIRRMSLDGHPGFDCGGIW--WFQNLTEYPHGV-----------LGSIFPVLM 249 (550)
Q Consensus 183 ~~~g~~~~~~~~l~~l~q~Pifi~~~~~lr~m~~~~~~~l~~~g~l--W~~dLt~~dp~~-----------~~~ilP~~~ 249 (550)
+..|| +|+|+|+||||++|.+++++. .+...+|+ |++||+.+||.+ .+.|||+++
T Consensus 641 Pl~GC-------LPmLIQmPIFfALY~vL~~si-----eLRgasFLpgWI~DLSapDplf~~~~~i~FiGd~i~ILPILm 708 (795)
T PRK01001 641 PITGC-------LPLLIQLPFLIAMFDLLKSSF-----LLRGASFIPGWIDNLTAPDVLFSWETPIWFIGNEFHLLPILL 708 (795)
T ss_pred chHHH-------HHHHHHHHHHHHHHHHHHHhH-----HhcCCchhhhhHhhccCCCccccccccccccccchhHHHHHH
Confidence 66777 999999999999999999986 45566776 999999999822 134999999
Q ss_pred HHHHHHHHHHhhccCcCCcccchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHhhhhHHHHHHHHHhcCH
Q 008887 250 AGLHYTNVQLSFGASSLGKENGLLGLLAKYYKSYLNLMTLPLFFLGYYIPQGSLVYWVTNSSFSIVQQLALKHP 323 (550)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~lYw~~s~~~~~~q~~~~~~p 323 (550)
+++++++++++..... +..+.. ++.++.|+.+|++++++++.++|+|+++||++|++++++|++++++.
T Consensus 709 gvtmflqqkls~~~~~-dp~t~q----q~Qqk~M~~iMPImf~f~f~~fPSGL~LYW~tSNl~SI~QQ~iI~k~ 777 (795)
T PRK01001 709 GVVMFAQQKISSLKRK-GPVTDQ----QRQQEAMGTMMALLFTFMFYNFPSGLNIYWLSSMLLGVIQQWVTNKI 777 (795)
T ss_pred HHHHHHHHHhcccCCC-Cccchh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhh
Confidence 9999999998765421 111111 22334455678888888889999999999999999999999988653
No 9
>PRK03449 putative inner membrane protein translocase component YidC; Provisional
Probab=100.00 E-value=4.7e-36 Score=294.10 Aligned_cols=217 Identities=20% Similarity=0.267 Sum_probs=167.0
Q ss_pred CCCcccHHHHHHHHHHHhh-----hcCChHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCCCCCCCCCcCcc--c
Q 008887 98 EESSLPVRALISFLDTYHD-----FTGFPWWTIIVSSTVALRIALLPLIVLQLKKIQRIAELLPRLPPPFPPPLSGK--R 170 (550)
Q Consensus 98 ~~~~~p~~~~~~~l~~~h~-----~~glpw~~~I~~~t~~vRl~~lPl~i~~~~~~~k~~~l~p~l~~~~~~~~~~~--~ 170 (550)
+.+++|++++.++++.++. .+|+|||++|+++|+++|++++|++++|+|+++||++++|+++++++||++++ .
T Consensus 3 ~~~~~P~~~~l~~~~~~~~~~l~~~~Gl~w~~aIil~TiivR~~l~Pl~i~q~ks~~km~~lqP~l~~iq~kyk~~~~~~ 82 (304)
T PRK03449 3 DFIYYPVSAILWFWHKLFSFVLGPDNGFAWALSVMFLVFTLRALLYKPFVRQIRTTRKMQELQPQIKALQKKYGNDRQKM 82 (304)
T ss_pred hhHHHHHHHHHHHHHHHHHhhcCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHhhhhHHHH
Confidence 4578999999999887653 58999999999999999999999999999999999999999999999998765 4
Q ss_pred HHHHHHHHHHHhhhcCCCchhHHHHHHHHHHHHHHHHHHHHHhhhcCCC----CCCc----------------cCCcc--
Q 008887 171 FVDQISLFRREKRAAGCPSLLWFIASFAIQVPCFLVGVTSIRRMSLDGH----PGFD----------------CGGIW-- 228 (550)
Q Consensus 171 ~~~~~~l~kk~~~~~g~~~~~~~~l~~l~q~Pifi~~~~~lr~m~~~~~----~~l~----------------~~g~l-- 228 (550)
++|++++|||+ ||+|+.. .+|+|+|+|||+++|.++|+|+.... ++++ ..+|+
T Consensus 83 ~~e~~~Lyk~~----gvnP~~g-clP~liQlPi~~~ly~~ir~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sFl~~ 157 (304)
T PRK03449 83 ALEMQKLQKEH----GFNPILG-CLPMLAQIPVFLGLFHVLRSFNRTGTGFGQLGMSVEENRNTPNYVFSAEDVQSFLDA 157 (304)
T ss_pred HHHHHHHHHHc----CCCchHH-HHHHHHHHHHHHHHHHHHHHhhcccccccccccchhhccccccccccHHHHHHHhhh
Confidence 67899999999 5555433 39999999999999999999953210 1100 01344
Q ss_pred ---------ccc----------cCCCCCccchhHHHHHHHHHHHHHHHHHhhccCcCCcccchhhHHHHHHHHHHHHHHH
Q 008887 229 ---------WFQ----------NLTEYPHGVLGSIFPVLMAGLHYTNVQLSFGASSLGKENGLLGLLAKYYKSYLNLMTL 289 (550)
Q Consensus 229 ---------W~~----------dLt~~dp~~~~~ilP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (550)
|+. |++..|..+...++|++++++++++.++++...... ++...++..++|.|+++||+
T Consensus 158 ~~~g~pL~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Ila~v~t~~~~~~s~~~~~~~--~~~~~~~~~m~k~M~~~mP~ 235 (304)
T PRK03449 158 RLFGAPLSAYITMPRSGLDAFVDFTRTNIILVGVPLMIIAGVATHFNSRASVARQSAE--AAANPQTAMMNKLALWVFPL 235 (304)
T ss_pred hhcCCChHhhhcccchhhchhcccccchhHHHHHHHHHHHHHHHHHHHHHHhhccccc--cccCcchHHHHHHHHHHhHH
Confidence 332 444444311234688999999999998876542211 11111222345678888999
Q ss_pred HHHHHhhhhhhhHHHHHhhhhHHHHHHHHHhc
Q 008887 290 PLFFLGYYIPQGSLVYWVTNSSFSIVQQLALK 321 (550)
Q Consensus 290 ~~~~~~~~~p~~l~lYw~~s~~~~~~q~~~~~ 321 (550)
++++++.++|+|+.+||++||+++++|+++..
T Consensus 236 m~~~~~~~~Pagl~LYW~~snl~~i~Qq~~i~ 267 (304)
T PRK03449 236 GVLVGGPFLPLAILLYWVSNNIWTFGQQHYVF 267 (304)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999875
No 10
>COG0706 YidC Preprotein translocase subunit YidC [Intracellular trafficking and secretion]
Probab=100.00 E-value=3.5e-35 Score=293.68 Aligned_cols=207 Identities=22% Similarity=0.389 Sum_probs=179.8
Q ss_pred CCCcccHHHHHHHHHHHhhhcCChHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCCCCCCCCCc-Ccc--cHHHH
Q 008887 98 EESSLPVRALISFLDTYHDFTGFPWWTIIVSSTVALRIALLPLIVLQLKKIQRIAELLPRLPPPFPPPL-SGK--RFVDQ 174 (550)
Q Consensus 98 ~~~~~p~~~~~~~l~~~h~~~glpw~~~I~~~t~~vRl~~lPl~i~~~~~~~k~~~l~p~l~~~~~~~~-~~~--~~~~~ 174 (550)
.++|.+...+..+++++|.+.|++||++|+++|+++|++++|++.++.++++||+++||+++++++|++ +++ .++|+
T Consensus 86 ~~f~~~~~~~~~~~~~~~~~~g~n~G~sIi~~ti~vRl~i~Pl~~~~~~s~~km~~lqP~~~~i~~kyk~~~~~~~q~e~ 165 (314)
T COG0706 86 GWFWNILAPLFPLLLFIDSFSGLNWGLSIILLTIIVRLLIFPLSQKSTRSMAKMQELQPKIKEIQEKYKGTDKQKQQQEM 165 (314)
T ss_pred hhHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhHHHHHHHhCCCCHHHHHHHH
Confidence 445666666888999999999999999999999999999999999999999999999999999999999 553 35699
Q ss_pred HHHHHHHh--hhcCCCchhHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCccCCcc-ccccCCCCCccchhH--HHHHHH
Q 008887 175 ISLFRREK--RAAGCPSLLWFIASFAIQVPCFLVGVTSIRRMSLDGHPGFDCGGIW-WFQNLTEYPHGVLGS--IFPVLM 249 (550)
Q Consensus 175 ~~l~kk~~--~~~g~~~~~~~~l~~l~q~Pifi~~~~~lr~m~~~~~~~l~~~g~l-W~~dLt~~dp~~~~~--ilP~~~ 249 (550)
+++||||+ +..|| +|+++|+|||+++|.+++++. .+...+|+ |+.||+.+|| ++ ++|+++
T Consensus 166 ~~Lyk~~~vnPl~gc-------lP~liQ~Pifialy~~l~~~~-----~l~~~~f~~w~~dl~~~dp---~~~~~~pii~ 230 (314)
T COG0706 166 MKLYKKHKVNPLAGC-------LPLLIQMPIFIALYYVLRSTV-----ELRGAPFLGWITDLSLPDP---DYILLLPILA 230 (314)
T ss_pred HHHHHHhCCCchhhH-------HHHHHHHHHHHHHHHHHHhcc-----cccccchhhhhhcccCCCC---chhhHHHHHH
Confidence 99999997 67788 999999999999999999997 55556666 9999999999 55 459999
Q ss_pred HHHHHHHHHHhhccCcCCcccchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHhhhhHHHHHHHHHhcCHHHHh
Q 008887 250 AGLHYTNVQLSFGASSLGKENGLLGLLAKYYKSYLNLMTLPLFFLGYYIPQGSLVYWVTNSSFSIVQQLALKHPASRT 327 (550)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~lYw~~s~~~~~~q~~~~~~p~~r~ 327 (550)
+++++.+.+++....+ . .+ .+.+++++.+|++.+.+++..+|+|+.+||+.|++++++|+++++++..++
T Consensus 231 gv~~f~q~~ls~~~~~-~-~q------~~~~~~~~~impi~f~~~~~~~PaGL~LYW~~~n~fsi~Qq~ii~~~~~~~ 300 (314)
T COG0706 231 GVTMFLQQKLSPRNLS-T-PQ------DPQQKKMMYIMPIIFTFFFFNFPAGLVLYWIVSNLFSILQQYILNKPLEKK 300 (314)
T ss_pred HHHHHHHHHhccccCC-c-cc------CHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHhhhhhhh
Confidence 9999999999887532 1 11 135567888889988899999999999999999999999999999887765
No 11
>PRK02201 putative inner membrane protein translocase component YidC; Provisional
Probab=100.00 E-value=1.6e-35 Score=295.17 Aligned_cols=212 Identities=11% Similarity=0.168 Sum_probs=164.2
Q ss_pred cccHHHHHHHH---HHHhhhcCChHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCCCCCCCCCcCc-c-------
Q 008887 101 SLPVRALISFL---DTYHDFTGFPWWTIIVSSTVALRIALLPLIVLQLKKIQRIAELLPRLPPPFPPPLSG-K------- 169 (550)
Q Consensus 101 ~~p~~~~~~~l---~~~h~~~glpw~~~I~~~t~~vRl~~lPl~i~~~~~~~k~~~l~p~l~~~~~~~~~~-~------- 169 (550)
.+|+.++...+ +.+|...|+|||++|+++|+++|++++|++++|+++++||+++||++++|++||+++ +
T Consensus 109 v~P~~~il~~i~~~~~~~~~~G~~w~laII~~TiivRlillPl~~k~~~s~~km~~lqPel~~Iq~Kyk~~~~d~~~~~k 188 (357)
T PRK02201 109 VYPIAQIILSIMASQSLSELYGWSTILAIIVVVLIIRLISFLITFKSTFNQEKQEELQGKKAKIDAKYKDYKKDKQMKQR 188 (357)
T ss_pred HHHHHHHHHHHHHhccccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhcccCCHHHHHH
Confidence 35555554443 344567899999999999999999999999999999999999999999999998765 2
Q ss_pred cHHHHHHHHHHHhhhcCCCchhHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCccCCccccccCCCCCc------cchhH
Q 008887 170 RFVDQISLFRREKRAAGCPSLLWFIASFAIQVPCFLVGVTSIRRMSLDGHPGFDCGGIWWFQNLTEYPH------GVLGS 243 (550)
Q Consensus 170 ~~~~~~~l~kk~~~~~g~~~~~~~~l~~l~q~Pifi~~~~~lr~m~~~~~~~l~~~g~lW~~dLt~~dp------~~~~~ 243 (550)
.++|++++|||+ ||+|+.. .+|+|+|+|||+++|.++|.+. ++....++|+ ||+.+|+ ++.+.
T Consensus 189 ~q~e~~~Lykk~----ginP~~g-clP~LiQ~Pif~aly~vl~~~~-----~l~~~~flgi-dLs~~~~~~~~~~~~~~l 257 (357)
T PRK02201 189 KQQEIQELYKKH----NISPFSP-FVQMFVTLPIFIAVYRVVQSLP-----SIKVTTWLGI-DLSATSWQEIFAGNWIYL 257 (357)
T ss_pred HHHHHHHHHHHc----CCCcHHH-HHHHHHHHHHHHHHHHHHHhhH-----hhccCCCccc-ccCCCChhhhccccchHH
Confidence 357889999999 4544432 2999999999999999999885 6778899999 9999874 12245
Q ss_pred HHHHHHHHHHHHHHHHhh----ccCcCCcccchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHhhhhHHHHHHHHH
Q 008887 244 IFPVLMAGLHYTNVQLSF----GASSLGKENGLLGLLAKYYKSYLNLMTLPLFFLGYYIPQGSLVYWVTNSSFSIVQQLA 319 (550)
Q Consensus 244 ilP~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~lYw~~s~~~~~~q~~~ 319 (550)
+++++++++++++..+.. +.......+..+.+.++.++.++.+|++.+++++..+|+|+.+||++|++++++|+++
T Consensus 258 ~l~ii~~~~~~ls~~l~~~l~~kk~~~~~~~~~~~~~~k~~~~m~~impi~~~~~~~~~PaGL~LYW~~snl~tI~Qq~~ 337 (357)
T PRK02201 258 PILIIVVPVQALSQLLPQILNKKKNKERTLNVKEKEALKKQNKTQNIISIVFIFFGVIFAAGVQIYWIIGGIWTILQTLG 337 (357)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566667777777775543 2111000011122334566778899999999999999999999999999999999998
Q ss_pred hcCH
Q 008887 320 LKHP 323 (550)
Q Consensus 320 ~~~p 323 (550)
.+.-
T Consensus 338 i~~~ 341 (357)
T PRK02201 338 IHYF 341 (357)
T ss_pred HHHH
Confidence 8754
No 12
>PRK01315 putative inner membrane protein translocase component YidC; Provisional
Probab=100.00 E-value=1.6e-35 Score=293.02 Aligned_cols=216 Identities=21% Similarity=0.336 Sum_probs=164.8
Q ss_pred CCCcccHHHHH-HHHHHHhh--------hcCChHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCCCCCCCCCcCc
Q 008887 98 EESSLPVRALI-SFLDTYHD--------FTGFPWWTIIVSSTVALRIALLPLIVLQLKKIQRIAELLPRLPPPFPPPLSG 168 (550)
Q Consensus 98 ~~~~~p~~~~~-~~l~~~h~--------~~glpw~~~I~~~t~~vRl~~lPl~i~~~~~~~k~~~l~p~l~~~~~~~~~~ 168 (550)
++..+|+.++. .++.++|. .+|+|||++|+++|+++|++++|++++|+|+++||++++|++++|++||+++
T Consensus 9 ~~i~~P~~~~l~~il~~~h~ll~~~~~~~tGl~w~~aIi~~Ti~vR~~l~Pl~i~q~~~~~km~~lqPe~~~iq~kyk~~ 88 (329)
T PRK01315 9 SAIMTPLYWVISGILVLFHTLLGFLFGPDSGLTWVLSIVGLVIVIRALLIPLFVKQIKSQRNMQEIQPKMKKIQEKYKGD 88 (329)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhH
Confidence 34567877765 33345553 4689999999999999999999999999999999999999999999999877
Q ss_pred c--cHHHHHHHHHHHhhhcCCCchhHHHHHHHHHHHHHHHHHHHHHhhhcCC----------CCCCccCCccccccCCCC
Q 008887 169 K--RFVDQISLFRREKRAAGCPSLLWFIASFAIQVPCFLVGVTSIRRMSLDG----------HPGFDCGGIWWFQNLTEY 236 (550)
Q Consensus 169 ~--~~~~~~~l~kk~~~~~g~~~~~~~~l~~l~q~Pifi~~~~~lr~m~~~~----------~~~l~~~g~lW~~dLt~~ 236 (550)
+ .++|++++|||+ ||+|+.. .+|+|+|+|||+++|+++|+++... .+++..++++|+ +|+..
T Consensus 89 ~~~~~~e~~~Lykk~----ginp~~g-clp~liQ~Pif~alf~~l~~~~~~~~~~~~~~~~~~~s~~~~~~fg~-~L~~~ 162 (329)
T PRK01315 89 RERMSQEMMKLYKET----GTNPLSS-CLPLLLQMPIFFALYRVLDSAASRGDGIGPINPPLLESFRHAHIFGA-PLAAT 162 (329)
T ss_pred HHHHHHHHHHHHHHc----CCCchHH-HHHHHHHHHHHHHHHHHHHHHHhccccccchhhhHHHhhhccccccc-ccccc
Confidence 5 367999999999 5655543 3999999999999999999876321 234556667766 24332
Q ss_pred -----Cc-----cchhHHHHHHHHHHHHHHHHHhhccCcCCcccchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHH
Q 008887 237 -----PH-----GVLGSIFPVLMAGLHYTNVQLSFGASSLGKENGLLGLLAKYYKSYLNLMTLPLFFLGYYIPQGSLVYW 306 (550)
Q Consensus 237 -----dp-----~~~~~ilP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~lYw 306 (550)
++ ...+.|||++++++++++....+.+..... + ...++.+.+|.|+++|++++++++.++|+|+.+||
T Consensus 163 f~~~~~~~~~~~~ii~~iL~il~~~~~~~~q~~~~~k~~~~~-~-~~~~~~~~~K~M~~imPim~~~~~~~fPaGL~LYW 240 (329)
T PRK01315 163 FLQALNAGNTAVQVVAAVLIILMSASQFITQLQLMTKNMPPE-A-KTGPMAQQQKMLLYLFPLMFLVSGIAFPVGVLFYW 240 (329)
T ss_pred ccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCc-c-cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 122468899999999988754433221111 1 11334566778899999999999999999999999
Q ss_pred hhhhHHHHHHHHHhc
Q 008887 307 VTNSSFSIVQQLALK 321 (550)
Q Consensus 307 ~~s~~~~~~q~~~~~ 321 (550)
++||+++++|+++..
T Consensus 241 ~~snl~si~Qq~~v~ 255 (329)
T PRK01315 241 LTSNVWTMGQQFYVI 255 (329)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999997643
No 13
>PRK00247 putative inner membrane protein translocase component YidC; Validated
Probab=100.00 E-value=6.2e-33 Score=281.48 Aligned_cols=214 Identities=19% Similarity=0.275 Sum_probs=153.9
Q ss_pred CCcccHHHHHHHHHH-Hhhhc----CChHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCCCCCCCCCcCccc---
Q 008887 99 ESSLPVRALISFLDT-YHDFT----GFPWWTIIVSSTVALRIALLPLIVLQLKKIQRIAELLPRLPPPFPPPLSGKR--- 170 (550)
Q Consensus 99 ~~~~p~~~~~~~l~~-~h~~~----glpw~~~I~~~t~~vRl~~lPl~i~~~~~~~k~~~l~p~l~~~~~~~~~~~~--- 170 (550)
...+|++++.+++.. ++++. |+|||++|+++||+||++++|++++|.++++||+.++|++++|+++|+++++
T Consensus 4 ~~~~Pvs~vm~~~h~~~~~~~G~~~~l~W~isIi~ltiiVRliLlPL~~~q~ks~~km~~lqPel~~iq~kyk~~~d~e~ 83 (429)
T PRK00247 4 IFIYPVSGVMKLWHLLLHNVLGLDDSLAWFASLFGLVITVRAIIAPFTWQQYKSGRTAAHIRPKRKALREEYKGKTDEAS 83 (429)
T ss_pred HHHHHHHHHHHHHHHHHhccccCcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHhcCCCHHH
Confidence 356899888877774 44443 6899999999999999999999999999999999999999999999887642
Q ss_pred ----HHHHHHHHHHHhhhcCCCchhHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcc----------------------
Q 008887 171 ----FVDQISLFRREKRAAGCPSLLWFIASFAIQVPCFLVGVTSIRRMSLDGHPGFDC---------------------- 224 (550)
Q Consensus 171 ----~~~~~~l~kk~~~~~g~~~~~~~~l~~l~q~Pifi~~~~~lr~m~~~~~~~l~~---------------------- 224 (550)
++|++++||++ ||+|+.. .+|+|+|+|||+++|++||+|+. +.+++.+
T Consensus 84 ~~~~qqe~~~LyKe~----ginP~~g-cLP~LIQiPIfigLy~vir~ma~-~~~Gl~~~~~~~ig~l~~~~v~sfl~a~~ 157 (429)
T PRK00247 84 IRELQQKQKDLNKEY----GYNPLAG-CVPALIQIPVFLGLYQVLLRMAR-PEGGLENPVHQPIGFLTSEEVESFLQGRV 157 (429)
T ss_pred HHHHHHHHHHHHHHc----CCCchHH-HHHHHHHHHHHHHHHHHHHhccc-cCCccccccccccccCCHHHHHHHHhccc
Confidence 46788999999 4544432 39999999999999999999983 4444332
Q ss_pred -------------CCccccccCCCCCccchhHHHHHHH--HHHHHHHHHHhhccCcC--CcccchhhHHHHHHHHHHHHH
Q 008887 225 -------------GGIWWFQNLTEYPHGVLGSIFPVLM--AGLHYTNVQLSFGASSL--GKENGLLGLLAKYYKSYLNLM 287 (550)
Q Consensus 225 -------------~g~lW~~dLt~~dp~~~~~ilP~~~--~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 287 (550)
++++|+ +.+.+|. .+++||+++ +++++++..+++..... ...+.....+.+.+..+++++
T Consensus 158 fGvpL~~~~sm~~e~~~~~-~~~~~~v--~~~ilPlii~a~vft~i~~~~s~~r~~~~~~~~~~~~~~~~k~m~~m~~~~ 234 (429)
T PRK00247 158 FNVPLPAYVSMPAEQLAYL-GTTQATV--LAFVLPLFIAAAVFTAINMAMSTYRSFQTNDHDSGFAVGMLKFLIVMAILA 234 (429)
T ss_pred cCCCcccccccchhhhhhc-cCCccch--HHHHHHHHHHHHHHHHHHHHHHhhcccccccccchHHHHHHHHHHHHHHHh
Confidence 222232 1233332 247888554 44455666665543211 111122223445565666777
Q ss_pred HHHHHHHhhh--hhhhHHHHHhhhhHHHHHHHHHhc
Q 008887 288 TLPLFFLGYY--IPQGSLVYWVTNSSFSIVQQLALK 321 (550)
Q Consensus 288 ~~~~~~~~~~--~p~~l~lYw~~s~~~~~~q~~~~~ 321 (550)
++++++++++ +|+|+++||++||+|+++|+.+..
T Consensus 235 Pim~~~~g~~~~~PaallLYWv~snlwtl~Qq~i~~ 270 (429)
T PRK00247 235 PIFPLSLGLTGPFPTAIALYWVANNLWTLIQNIIMY 270 (429)
T ss_pred HHHHHHHHHhccchHHHHHHHHHhhHHHHHHHHHHH
Confidence 8777776655 799999999999999999999765
No 14
>KOG1239 consensus Inner membrane protein translocase involved in respiratory chain assembly [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=1.2e-28 Score=249.76 Aligned_cols=220 Identities=27% Similarity=0.434 Sum_probs=184.5
Q ss_pred CCCCcccHHHHHHHHHHHhhhcCChHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCCCCCCCCCcCcc-------
Q 008887 97 GEESSLPVRALISFLDTYHDFTGFPWWTIIVSSTVALRIALLPLIVLQLKKIQRIAELLPRLPPPFPPPLSGK------- 169 (550)
Q Consensus 97 ~~~~~~p~~~~~~~l~~~h~~~glpw~~~I~~~t~~vRl~~lPl~i~~~~~~~k~~~l~p~l~~~~~~~~~~~------- 169 (550)
...+|.|+..+++.|+.+|.++|+|||++|+.+|+.+|..++|+.++++|+.+|++.+.|+|+++.++....+
T Consensus 77 ~~~~~~p~~~lq~~l~~~h~~~g~pww~~i~~~t~~ir~~i~~~~~~~~~~~akls~~~~~mp~~~~~l~~a~~~~~~~~ 156 (372)
T KOG1239|consen 77 ALSSWRPVATLQNELERLHVYSGLPWWASIVATTVLIRSLITPLLTNSQKNEAKLSKIFPEMPSLGEELGEAAQDNNALL 156 (372)
T ss_pred HhcccCchhHHHHHHHHHHHHhCCcchHHHHHhHhhHhhhhhhHHHhhhhHHHHHhhcCcccHHHHHHHHhhhccccchH
Confidence 4778999999999999999999999999999999999999999999999999999999999998876543322
Q ss_pred -cHHHHHHHHHHHhhhcCCCchhHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCccCCccccccCCCCCccchhHHHHHH
Q 008887 170 -RFVDQISLFRREKRAAGCPSLLWFIASFAIQVPCFLVGVTSIRRMSLDGHPGFDCGGIWWFQNLTEYPHGVLGSIFPVL 248 (550)
Q Consensus 170 -~~~~~~~l~kk~~~~~g~~~~~~~~l~~l~q~Pifi~~~~~lr~m~~~~~~~l~~~g~lW~~dLt~~dp~~~~~ilP~~ 248 (550)
-++++..++++| |+++ +.+.+| ++|+|+|+++|++||.|+ .+++++.++|++||+||+.+|| ++++|++
T Consensus 157 ~~q~~~~~l~~~~----~v~~-~~l~~~-v~q~~l~~sff~air~ma-~~v~~f~t~g~~wf~dLt~~dp---~~ilp~i 226 (372)
T KOG1239|consen 157 SWQEEQKLLVKKY----GVKP-KQLALP-VVQGPLFISFFMAIRVMA-VPVPSFTTGGLLWFPDLTGPDP---LYILPGI 226 (372)
T ss_pred HHHHHHHhhhhhc----CCCc-chhhhh-hhcchhHHHHHHHHHHhh-ccccccchhhHHhcccccccCc---chhhHHH
Confidence 145677888888 7876 665555 899999999999999999 8999999999999999999999 8999999
Q ss_pred HHHHHHHHHHHhhccCcCCcccchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHhhhhHHHHHHHHHhcCHHHHhh
Q 008887 249 MAGLHYTNVQLSFGASSLGKENGLLGLLAKYYKSYLNLMTLPLFFLGYYIPQGSLVYWVTNSSFSIVQQLALKHPASRTM 328 (550)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~lYw~~s~~~~~~q~~~~~~p~~r~~ 328 (550)
+++++..+++++...... .... ...++.+..++++..+.++.++|.++++||+ ++.+|..+++. .+|..
T Consensus 227 t~~~~~~~~~~~~~~~~~---~~~~---~~~~~~~~~~~~ll~~~~t~~~~~a~~~ywl----~s~~~~~vlr~-~vr~~ 295 (372)
T KOG1239|consen 227 TLATLTLFIELGAETGLS---SSKL---LPAMKSFIRILPLLSLASTMQFPSAIFVYWL----FSLVQGLVLRS-EVRKK 295 (372)
T ss_pred HHHHHHHHHHHHHHhhhh---cccc---cchhHHHHHHhhhhhhhhhhhhhhhHHhhhh----hHHHHHHHhHH-HHHHh
Confidence 999999999887654211 1111 2234444555555555556899999999999 99999999998 99999
Q ss_pred hCCCCCCCC
Q 008887 329 LGLPDKVVP 337 (550)
Q Consensus 329 l~i~~~~~~ 337 (550)
++++...+.
T Consensus 296 l~~~~~~~~ 304 (372)
T KOG1239|consen 296 LGIPDVPSI 304 (372)
T ss_pred cCCCCCCCC
Confidence 999888775
No 15
>PRK02654 putative inner membrane protein translocase component YidC; Provisional
Probab=99.95 E-value=5e-27 Score=225.53 Aligned_cols=102 Identities=19% Similarity=0.300 Sum_probs=93.3
Q ss_pred HHHHHHHHHHhhhcCChHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCCC----CCCCCCcCcc--cHHHHHHHH
Q 008887 105 RALISFLDTYHDFTGFPWWTIIVSSTVALRIALLPLIVLQLKKIQRIAELLPRLP----PPFPPPLSGK--RFVDQISLF 178 (550)
Q Consensus 105 ~~~~~~l~~~h~~~glpw~~~I~~~t~~vRl~~lPl~i~~~~~~~k~~~l~p~l~----~~~~~~~~~~--~~~~~~~l~ 178 (550)
.++..+++++|.++| +||++|+++|+++|++++|++++|+|+++||+.+||+|+ +|++||++++ .++|++++|
T Consensus 11 ~il~~iL~f~y~~vg-swGlAIIllTIIVRlIL~PLsikQ~KS~~KM~~LQPemqkk~~eIqeKYKdDpqk~QqEmmkLY 89 (375)
T PRK02654 11 NVMLPILDFFYGIVP-SYGLAIVALTLVIRFALYPLSAGSIRNMRRMKIAQPVMQKRQAEIQERYKNDPQKQQEEMGKLM 89 (375)
T ss_pred hHHHHHHHHHHHhcc-hHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCchhhhHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 556688999999999 999999999999999999999999999999999999996 5888888774 468999999
Q ss_pred HHHh-hhcCCCchhHHHHHHHHHHHHHHHHHHHHHhh
Q 008887 179 RREK-RAAGCPSLLWFIASFAIQVPCFLVGVTSIRRM 214 (550)
Q Consensus 179 kk~~-~~~g~~~~~~~~l~~l~q~Pifi~~~~~lr~m 214 (550)
||++ +..|| +|+|+|+|||+++|.++|..
T Consensus 90 KE~GNPlaGC-------LP~LIQmPIF~aLY~~LR~s 119 (375)
T PRK02654 90 KEFGNPLAGC-------LPLLVQMPILFALFATLRGS 119 (375)
T ss_pred HHcCCChhhH-------HHHHHHHHHHHHHHHHHHhC
Confidence 9997 66788 99999999999999999984
No 16
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.67 E-value=5.9e-16 Score=158.78 Aligned_cols=220 Identities=16% Similarity=0.136 Sum_probs=166.6
Q ss_pred hhhHHHHHhhhhHHHHHHHHHhcCHHHHhhhCCCCCCCCCCCCCCccccccCcCC--CCchhhccCccCCCChHHHHHHH
Q 008887 299 PQGSLVYWVTNSSFSIVQQLALKHPASRTMLGLPDKVVPAAARKPEEIDTLETTL--ESPAKQLKISVENLTPKELIALS 376 (550)
Q Consensus 299 p~~l~lYw~~s~~~~~~q~~~~~~p~~r~~l~i~~~~~~~~~~~s~~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~la 376 (550)
|..+=.|.-.++++.-.-.+-.......+++.+.+.....-.. ..-+...++.+ .-..+.+++..+.-.+++..++|
T Consensus 249 P~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gN-la~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~Nla 327 (966)
T KOG4626|consen 249 PNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGN-LACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLA 327 (966)
T ss_pred CcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccc-eEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHH
Confidence 4444556667777766655544444555555554433322111 11122223322 23345556665555778888999
Q ss_pred HHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHH
Q 008887 377 VKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSG 456 (550)
Q Consensus 377 ~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg 456 (550)
.++-..|+.++|+.+|.++|...|.++++.++||.+|.++|.+++|...|+++++. +|... .++.+||
T Consensus 328 nALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v-----~p~~a-------aa~nNLa 395 (966)
T KOG4626|consen 328 NALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEV-----FPEFA-------AAHNNLA 395 (966)
T ss_pred HHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhh-----Chhhh-------hhhhhHH
Confidence 99999999999999999999999999999999999999999999999999999999 55544 3788999
Q ss_pred HHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHHHHHHHhhHH
Q 008887 457 VACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQLENNDE 536 (550)
Q Consensus 457 ~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~l~~~~~ 536 (550)
.+|.++|++++|+.+|++++++. |... +++.++|..|..+|+.++|++.|.+++.++|.+.+++.+|..+..
T Consensus 396 ~i~kqqgnl~~Ai~~YkealrI~-P~fA-------da~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~k 467 (966)
T KOG4626|consen 396 SIYKQQGNLDDAIMCYKEALRIK-PTFA-------DALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYK 467 (966)
T ss_pred HHHHhcccHHHHHHHHHHHHhcC-chHH-------HHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhh
Confidence 99999999999999999999998 8777 899999999999999999999999999999999999998887655
Q ss_pred HHH
Q 008887 537 EFV 539 (550)
Q Consensus 537 ~~~ 539 (550)
+.+
T Consensus 468 DsG 470 (966)
T KOG4626|consen 468 DSG 470 (966)
T ss_pred ccC
Confidence 543
No 17
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.65 E-value=4.4e-15 Score=136.65 Aligned_cols=145 Identities=24% Similarity=0.247 Sum_probs=133.9
Q ss_pred HHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHH
Q 008887 371 ELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIV 450 (550)
Q Consensus 371 ~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~ 450 (550)
....+|..|+..|++..|...+++||+.||++..+|..++.+|...|+.+.|.+.|++|+.+ +|++. +
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl-----~p~~G-d------ 104 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSL-----APNNG-D------ 104 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhc-----CCCcc-c------
Confidence 44589999999999999999999999999999999999999999999999999999999999 88887 3
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHHHHH
Q 008887 451 ASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQ 530 (550)
Q Consensus 451 a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~ 530 (550)
..+|.|.-++.+|++++|..+|++|++. |..+ ...+.+.++|.|..+.|+.+.|.++|+++++++|++......
T Consensus 105 VLNNYG~FLC~qg~~~eA~q~F~~Al~~--P~Y~----~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~ 178 (250)
T COG3063 105 VLNNYGAFLCAQGRPEEAMQQFERALAD--PAYG----EPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLE 178 (250)
T ss_pred hhhhhhHHHHhCCChHHHHHHHHHHHhC--CCCC----CcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHH
Confidence 7789999999999999999999999987 7665 455899999999999999999999999999999999987766
Q ss_pred HHh
Q 008887 531 LEN 533 (550)
Q Consensus 531 l~~ 533 (550)
+.+
T Consensus 179 ~a~ 181 (250)
T COG3063 179 LAR 181 (250)
T ss_pred HHH
Confidence 654
No 18
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.64 E-value=9.5e-16 Score=157.29 Aligned_cols=159 Identities=20% Similarity=0.165 Sum_probs=142.0
Q ss_pred hccCccCCCChHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCC
Q 008887 359 QLKISVENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGH 438 (550)
Q Consensus 359 ~~~~~~~~l~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~ 438 (550)
.+++......+.+..++|-.|+.+|+.|-|+..|+++++.+|+.++++.++|.++-..|+..||+++|.+|+++ +
T Consensus 276 ~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l-----~ 350 (966)
T KOG4626|consen 276 LRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRL-----C 350 (966)
T ss_pred HHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHh-----C
Confidence 33443333355556689999999999999999999999999999999999999999999999999999999999 8
Q ss_pred CCChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008887 439 PTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAA 518 (550)
Q Consensus 439 p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al 518 (550)
|+++ + +.++||.++.++|+.++|...|+++++.. |... .++.+||.+|.++|++++|+.+|++++
T Consensus 351 p~ha-d------am~NLgni~~E~~~~e~A~~ly~~al~v~-p~~a-------aa~nNLa~i~kqqgnl~~Ai~~Ykeal 415 (966)
T KOG4626|consen 351 PNHA-D------AMNNLGNIYREQGKIEEATRLYLKALEVF-PEFA-------AAHNNLASIYKQQGNLDDAIMCYKEAL 415 (966)
T ss_pred CccH-H------HHHHHHHHHHHhccchHHHHHHHHHHhhC-hhhh-------hhhhhHHHHHHhcccHHHHHHHHHHHH
Confidence 9888 3 78899999999999999999999999998 8877 899999999999999999999999999
Q ss_pred HcCCCcHHHHHHHHhhHHH
Q 008887 519 AHNPQYNELLEQLENNDEE 537 (550)
Q Consensus 519 ~~~p~~~~~~~~l~~~~~~ 537 (550)
+++|.+.++..++..-..+
T Consensus 416 rI~P~fAda~~NmGnt~ke 434 (966)
T KOG4626|consen 416 RIKPTFADALSNMGNTYKE 434 (966)
T ss_pred hcCchHHHHHHhcchHHHH
Confidence 9999999999887764333
No 19
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.56 E-value=1.5e-13 Score=122.94 Aligned_cols=125 Identities=16% Similarity=0.122 Sum_probs=113.6
Q ss_pred ChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHHhcCHH
Q 008887 387 RPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWE 466 (550)
Q Consensus 387 ~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~g~~~ 466 (550)
--+.+++++++.+|++ ++.+|.++.+.|++++|.++|++++.. +|.+. .+++++|.++...|+++
T Consensus 11 ~~~~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~-----~P~~~-------~a~~~lg~~~~~~g~~~ 75 (144)
T PRK15359 11 IPEDILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMA-----QPWSW-------RAHIALAGTWMMLKEYT 75 (144)
T ss_pred CHHHHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCCcH-------HHHHHHHHHHHHHhhHH
Confidence 3568899999999885 667899999999999999999999999 88876 37889999999999999
Q ss_pred HHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHHHHHHHhh
Q 008887 467 EGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQLENN 534 (550)
Q Consensus 467 eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~l~~~ 534 (550)
+|+..|+++++.+ |+++ .+++++|.++..+|++++|+..|+++++++|++.+++.....+
T Consensus 76 ~A~~~y~~Al~l~-p~~~-------~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~ 135 (144)
T PRK15359 76 TAINFYGHALMLD-ASHP-------EPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNA 135 (144)
T ss_pred HHHHHHHHHHhcC-CCCc-------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence 9999999999998 9888 9999999999999999999999999999999999988777663
No 20
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.50 E-value=8.6e-13 Score=132.74 Aligned_cols=152 Identities=22% Similarity=0.201 Sum_probs=112.0
Q ss_pred hHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHH
Q 008887 369 PKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLL 448 (550)
Q Consensus 369 ~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l 448 (550)
++.++++|..+...|++++|+..|+++++.+|+++.+++.+|.++...|++++|++.|++++++ +|++. .
T Consensus 64 a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l-----~P~~~-~---- 133 (296)
T PRK11189 64 AQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLEL-----DPTYN-Y---- 133 (296)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCCH-H----
Confidence 3446677777777777777777777777777777777777777777777777777777777777 66665 2
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccc---------c--------------------------------
Q 008887 449 IVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKS---------K-------------------------------- 487 (550)
Q Consensus 449 ~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~---------~-------------------------------- 487 (550)
++.++|.++...|++++|++.|+++++.+ |+++.. .
T Consensus 134 --a~~~lg~~l~~~g~~~eA~~~~~~al~~~-P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~lg 210 (296)
T PRK11189 134 --AYLNRGIALYYGGRYELAQDDLLAFYQDD-PNDPYRALWLYLAESKLDPKQAKENLKQRYEKLDKEQWGWNIVEFYLG 210 (296)
T ss_pred --HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCccccHHHHHHHHcc
Confidence 66677777777777777777777777765 554300 0
Q ss_pred ----------------------ccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CcHHHHHHHHh
Q 008887 488 ----------------------AHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNP-QYNELLEQLEN 533 (550)
Q Consensus 488 ----------------------~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p-~~~~~~~~l~~ 533 (550)
++..++|+++|.++.+.|++++|+.+|+++++.+| ++.+++..+-+
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~e~~~~~~e 279 (296)
T PRK11189 211 KISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFVEHRYALLE 279 (296)
T ss_pred CCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHHHHHHHHHH
Confidence 00235789999999999999999999999999996 77776654433
No 21
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.49 E-value=2.9e-13 Score=135.43 Aligned_cols=155 Identities=19% Similarity=0.204 Sum_probs=141.3
Q ss_pred cCCCChHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChh
Q 008887 364 VENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPE 443 (550)
Q Consensus 364 ~~~l~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~ 443 (550)
++..-|+..+-+|..|-..++.++|+.+|++||+++|....+|..+|.-|..+++...|++.|++|+++ +|.+-
T Consensus 325 idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi-----~p~Dy- 398 (559)
T KOG1155|consen 325 IDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDI-----NPRDY- 398 (559)
T ss_pred hccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhc-----CchhH-
Confidence 444456666678889999999999999999999999999999999999999999999999999999999 88776
Q ss_pred hHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 008887 444 AIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQ 523 (550)
Q Consensus 444 ~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~ 523 (550)
.+||.+|.+|.-.+-..=|+-+|++|.+.. |.|. ..|..||+||.+.++.++|+.+|++++.....
T Consensus 399 ------RAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDs-------Rlw~aLG~CY~kl~~~~eAiKCykrai~~~dt 464 (559)
T KOG1155|consen 399 ------RAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDS-------RLWVALGECYEKLNRLEEAIKCYKRAILLGDT 464 (559)
T ss_pred ------HHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCch-------HHHHHHHHHHHHhccHHHHHHHHHHHHhcccc
Confidence 499999999999999999999999999998 9999 99999999999999999999999999999888
Q ss_pred cHHHHHHHHhhHHHH
Q 008887 524 YNELLEQLENNDEEF 538 (550)
Q Consensus 524 ~~~~~~~l~~~~~~~ 538 (550)
...+...+.+..++.
T Consensus 465 e~~~l~~LakLye~l 479 (559)
T KOG1155|consen 465 EGSALVRLAKLYEEL 479 (559)
T ss_pred chHHHHHHHHHHHHH
Confidence 777777777755544
No 22
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.46 E-value=1.6e-12 Score=144.24 Aligned_cols=134 Identities=18% Similarity=0.147 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHH
Q 008887 371 ELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIV 450 (550)
Q Consensus 371 ~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~ 450 (550)
.++.+|..+...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+.+|++++++ +|.+. .
T Consensus 367 ~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l-----~P~~~-~------ 434 (615)
T TIGR00990 367 SYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDL-----DPDFI-F------ 434 (615)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CccCH-H------
Confidence 33444444444455555555555555555554555555555555555555555555555444 44333 1
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCc
Q 008887 451 ASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQY 524 (550)
Q Consensus 451 a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~ 524 (550)
++.++|.++..+|++++|+..|+++++.. |+++ .++..+|.++...|++++|++.|+++++++|++
T Consensus 435 ~~~~la~~~~~~g~~~eA~~~~~~al~~~-P~~~-------~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~ 500 (615)
T TIGR00990 435 SHIQLGVTQYKEGSIASSMATFRRCKKNF-PEAP-------DVYNYYGELLLDQNKFDEAIEKFDTAIELEKET 500 (615)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCh-------HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCcc
Confidence 33344555555555555555555554444 4444 444455555555555555555555555554443
No 23
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.46 E-value=1.5e-12 Score=122.62 Aligned_cols=131 Identities=15% Similarity=0.111 Sum_probs=117.3
Q ss_pred cCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHH-H
Q 008887 382 KGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVAC-I 460 (550)
Q Consensus 382 ~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~-~ 460 (550)
.++.++++..++++++.+|++.++|..+|.+|...|++++|+.+|++++++ +|+++ . .+..+|.++ .
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l-----~P~~~-~------~~~~lA~aL~~ 119 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQL-----RGENA-E------LYAALATVLYY 119 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCCH-H------HHHHHHHHHHH
Confidence 445678899999999999999999999999999999999999999999999 88887 3 677889875 6
Q ss_pred HhcC--HHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHHHHHHH
Q 008887 461 RQEK--WEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQLE 532 (550)
Q Consensus 461 ~~g~--~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~l~ 532 (550)
..|+ +++|.+.++++++.+ |++. .++..+|.++.+.|++++|+.+|+++++.+|.+.+-...++
T Consensus 120 ~~g~~~~~~A~~~l~~al~~d-P~~~-------~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~r~~~i~ 185 (198)
T PRK10370 120 QAGQHMTPQTREMIDKALALD-ANEV-------TALMLLASDAFMQADYAQAIELWQKVLDLNSPRVNRTQLVE 185 (198)
T ss_pred hcCCCCcHHHHHHHHHHHHhC-CCCh-------hHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHH
Confidence 7777 599999999999998 9888 99999999999999999999999999999987766555553
No 24
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.46 E-value=1.3e-12 Score=120.56 Aligned_cols=151 Identities=21% Similarity=0.215 Sum_probs=131.6
Q ss_pred cCccCCCChHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCC
Q 008887 361 KISVENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPT 440 (550)
Q Consensus 361 ~~~~~~l~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~ 440 (550)
++..+.-+..++..+|..|...|+.+.|.+.|++|++++|++.+++++.|..++.+|++++|.+.|++|+.. |.
T Consensus 61 AL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~------P~ 134 (250)
T COG3063 61 ALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALAD------PA 134 (250)
T ss_pred HHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHHHHHHHHHHhC------CC
Confidence 333343466777899999999999999999999999999999999999999999999999999999999765 55
Q ss_pred ChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 008887 441 EPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAH 520 (550)
Q Consensus 441 ~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~ 520 (550)
.+... ..+-|+|.|..+.|+.+.|.++|+++++.+ |+.+ .....++..+++.|++.+|..++++....
T Consensus 135 Y~~~s----~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~-------~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~ 202 (250)
T COG3063 135 YGEPS----DTLENLGLCALKAGQFDQAEEYLKRALELD-PQFP-------PALLELARLHYKAGDYAPARLYLERYQQR 202 (250)
T ss_pred CCCcc----hhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCC-------hHHHHHHHHHHhcccchHHHHHHHHHHhc
Confidence 55333 256689999999999999999999999998 9888 89999999999999999999999998887
Q ss_pred CCCcHHHHH
Q 008887 521 NPQYNELLE 529 (550)
Q Consensus 521 ~p~~~~~~~ 529 (550)
-+...+-+.
T Consensus 203 ~~~~A~sL~ 211 (250)
T COG3063 203 GGAQAESLL 211 (250)
T ss_pred ccccHHHHH
Confidence 665555443
No 25
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.45 E-value=9.4e-13 Score=117.72 Aligned_cols=117 Identities=13% Similarity=0.082 Sum_probs=108.9
Q ss_pred CChHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHH
Q 008887 367 LTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAID 446 (550)
Q Consensus 367 l~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~ 446 (550)
++|+..+..|..+...|++++|+..|++++..+|++..++..+|.++...|++++|+..|++++++ +|.++ .
T Consensus 22 ~~p~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l-----~p~~~-~-- 93 (144)
T PRK15359 22 VDPETVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALML-----DASHP-E-- 93 (144)
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-----CCCCc-H--
Confidence 578888899999999999999999999999999999999999999999999999999999999999 89887 3
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHh
Q 008887 447 LLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCN 503 (550)
Q Consensus 447 ~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~ 503 (550)
+++++|.++...|++++|++.|+++++.. |+++ ..+..+|.+...
T Consensus 94 ----a~~~lg~~l~~~g~~~eAi~~~~~Al~~~-p~~~-------~~~~~~~~~~~~ 138 (144)
T PRK15359 94 ----PVYQTGVCLKMMGEPGLAREAFQTAIKMS-YADA-------SWSEIRQNAQIM 138 (144)
T ss_pred ----HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCh-------HHHHHHHHHHHH
Confidence 88899999999999999999999999998 9888 788887777654
No 26
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.45 E-value=1.9e-13 Score=142.58 Aligned_cols=143 Identities=19% Similarity=0.217 Sum_probs=119.8
Q ss_pred CCChHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhH
Q 008887 366 NLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAI 445 (550)
Q Consensus 366 ~l~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~ 445 (550)
..+|+.++.+|..|--+++++.|+++|++|+++||++.-+|-.+|.-+....++|+|..+|++|+.. +|++-
T Consensus 418 ~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~-----~~rhY--- 489 (638)
T KOG1126|consen 418 PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGV-----DPRHY--- 489 (638)
T ss_pred CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcC-----Cchhh---
Confidence 3578888888888888899999999999999998888888888888888888888888888888888 66654
Q ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcH
Q 008887 446 DLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYN 525 (550)
Q Consensus 446 ~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~ 525 (550)
.|||.+|.+|.++++++.|.-.|++|++++ |.+. .....+|..+.+.|+.|+|++.|++|+.++|.++
T Consensus 490 ----nAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~ns-------vi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~ 557 (638)
T KOG1126|consen 490 ----NAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNS-------VILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNP 557 (638)
T ss_pred ----HHHHhhhhheeccchhhHHHHHHHhhhcCC-ccch-------hHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCc
Confidence 388888888888888888888888888887 8776 7788888888888888888888888888887766
Q ss_pred HHH
Q 008887 526 ELL 528 (550)
Q Consensus 526 ~~~ 528 (550)
-..
T Consensus 558 l~~ 560 (638)
T KOG1126|consen 558 LCK 560 (638)
T ss_pred hhH
Confidence 433
No 27
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.45 E-value=3.5e-12 Score=112.58 Aligned_cols=124 Identities=20% Similarity=0.241 Sum_probs=114.8
Q ss_pred HHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHHhcCHHHHH
Q 008887 390 PLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGI 469 (550)
Q Consensus 390 ~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~ 469 (550)
++++++++.+|++..+.+.+|..+...|++++|.+.+++++.. +|.++ .+++++|.++...|++++|+
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-----~p~~~-------~~~~~la~~~~~~~~~~~A~ 71 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAY-----DPYNS-------RYWLGLAACCQMLKEYEEAI 71 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHh-----CCCcH-------HHHHHHHHHHHHHHHHHHHH
Confidence 5789999999999999999999999999999999999999999 78776 37889999999999999999
Q ss_pred HHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHHHHHHHh
Q 008887 470 AHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQLEN 533 (550)
Q Consensus 470 ~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~l~~ 533 (550)
++++++++.+ |+++ ..++.+|.+|...|++++|...++++++.+|++........+
T Consensus 72 ~~~~~~~~~~-p~~~-------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~ 127 (135)
T TIGR02552 72 DAYALAAALD-PDDP-------RPYFHAAECLLALGEPESALKALDLAIEICGENPEYSELKER 127 (135)
T ss_pred HHHHHHHhcC-CCCh-------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHH
Confidence 9999999998 8887 999999999999999999999999999999999886665554
No 28
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.43 E-value=8.1e-12 Score=119.49 Aligned_cols=141 Identities=26% Similarity=0.284 Sum_probs=71.7
Q ss_pred HHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHH
Q 008887 370 KELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLI 449 (550)
Q Consensus 370 ~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~ 449 (550)
+....+|..+...|++++|++.++++++.+|++..++..+|.++...|++++|++.++++++. +|.+. .
T Consensus 32 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-----~~~~~-~----- 100 (234)
T TIGR02521 32 KIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTL-----NPNNG-D----- 100 (234)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CCCCH-H-----
Confidence 344455555555566666666666665555555555555566666666666666666555555 44433 1
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHHH
Q 008887 450 VASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELL 528 (550)
Q Consensus 450 ~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~ 528 (550)
++.++|.++...|++++|++.++++++.. ... .....+..+|.++...|++++|.+.++++++.+|++...+
T Consensus 101 -~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 172 (234)
T TIGR02521 101 -VLNNYGTFLCQQGKYEQAMQQFEQAIEDP--LYP----QPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESL 172 (234)
T ss_pred -HHHHHHHHHHHcccHHHHHHHHHHHHhcc--ccc----cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHH
Confidence 33445555555555555555555554431 100 1113444445555555555555555555555444444433
No 29
>PRK12370 invasion protein regulator; Provisional
Probab=99.43 E-value=3.5e-12 Score=139.46 Aligned_cols=152 Identities=15% Similarity=0.078 Sum_probs=131.1
Q ss_pred CccCCCChHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCC
Q 008887 362 ISVENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTE 441 (550)
Q Consensus 362 ~~~~~l~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~ 441 (550)
+..+.-+++.+..+|..+...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+.++++++++ +|.+
T Consensus 331 l~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l-----~P~~ 405 (553)
T PRK12370 331 TELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKL-----DPTR 405 (553)
T ss_pred HhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-----CCCC
Confidence 33333477788899999999999999999999999999999999999999999999999999999999999 8887
Q ss_pred hhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 008887 442 PEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHN 521 (550)
Q Consensus 442 ~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~ 521 (550)
+. +++.++.+++..|++++|++.++++++..+|+++ .++..+|.+|...|++++|++.++++....
T Consensus 406 ~~-------~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~-------~~~~~la~~l~~~G~~~eA~~~~~~~~~~~ 471 (553)
T PRK12370 406 AA-------AGITKLWITYYHTGIDDAIRLGDELRSQHLQDNP-------ILLSMQVMFLSLKGKHELARKLTKEISTQE 471 (553)
T ss_pred hh-------hHHHHHHHHHhccCHHHHHHHHHHHHHhccccCH-------HHHHHHHHHHHhCCCHHHHHHHHHHhhhcc
Confidence 62 3334566677799999999999999877535666 789999999999999999999999998888
Q ss_pred CCcHHHHHHHH
Q 008887 522 PQYNELLEQLE 532 (550)
Q Consensus 522 p~~~~~~~~l~ 532 (550)
|+...+...+.
T Consensus 472 ~~~~~~~~~l~ 482 (553)
T PRK12370 472 ITGLIAVNLLY 482 (553)
T ss_pred chhHHHHHHHH
Confidence 88776666554
No 30
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.42 E-value=2.6e-12 Score=142.65 Aligned_cols=147 Identities=13% Similarity=0.104 Sum_probs=135.7
Q ss_pred ChHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHH
Q 008887 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDL 447 (550)
Q Consensus 368 ~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~ 447 (550)
....+..+|..+...|++++|+..|+++++.+|++..++..+|.++...|++++|+.+|+++++. +|.++ .
T Consensus 330 ~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~-----~p~~~-~--- 400 (615)
T TIGR00990 330 EAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKL-----NSEDP-D--- 400 (615)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCCH-H---
Confidence 34456689999999999999999999999999999999999999999999999999999999999 88877 3
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHH
Q 008887 448 LIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNEL 527 (550)
Q Consensus 448 l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~ 527 (550)
+++.+|.++...|++++|+++|+++++++ |++. .++..+|.++.++|++++|+..++++++.+|++...
T Consensus 401 ---~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~-------~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~ 469 (615)
T TIGR00990 401 ---IYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFI-------FSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDV 469 (615)
T ss_pred ---HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCH-------HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHH
Confidence 78889999999999999999999999998 8777 899999999999999999999999999999999887
Q ss_pred HHHHHhh
Q 008887 528 LEQLENN 534 (550)
Q Consensus 528 ~~~l~~~ 534 (550)
+..+..+
T Consensus 470 ~~~lg~~ 476 (615)
T TIGR00990 470 YNYYGEL 476 (615)
T ss_pred HHHHHHH
Confidence 7766554
No 31
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.40 E-value=1.8e-11 Score=117.09 Aligned_cols=147 Identities=22% Similarity=0.253 Sum_probs=127.7
Q ss_pred ChHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHH
Q 008887 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDL 447 (550)
Q Consensus 368 ~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~ 447 (550)
++.....+|..+...|++++|++.++++++.+|++..++..+|.++...|++++|++.++++++. .+.....
T Consensus 64 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~--- 135 (234)
T TIGR02521 64 DYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIED-----PLYPQPA--- 135 (234)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhc-----cccccch---
Confidence 34466689999999999999999999999999999999999999999999999999999999876 2211111
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHH
Q 008887 448 LIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNEL 527 (550)
Q Consensus 448 l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~ 527 (550)
..++.+|.++...|++++|.+.++++++.. |++. ..+..+|.++...|++++|...++++++..|++...
T Consensus 136 --~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~-------~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 205 (234)
T TIGR02521 136 --RSLENAGLCALKAGDFDKAEKYLTRALQID-PQRP-------ESLLELAELYYLRGQYKDARAYLERYQQTYNQTAES 205 (234)
T ss_pred --HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCh-------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Confidence 266779999999999999999999999997 8776 889999999999999999999999999998887765
Q ss_pred HHHHH
Q 008887 528 LEQLE 532 (550)
Q Consensus 528 ~~~l~ 532 (550)
+....
T Consensus 206 ~~~~~ 210 (234)
T TIGR02521 206 LWLGI 210 (234)
T ss_pred HHHHH
Confidence 54443
No 32
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.40 E-value=1.7e-12 Score=135.66 Aligned_cols=203 Identities=17% Similarity=0.182 Sum_probs=97.7
Q ss_pred HHHHhhhhHHHHHHHHHhcCHHHHhhhCCCCCCCCCCCCCCccccccCcCCCC--chhhccCccCCCChHHHHHHHHHHH
Q 008887 303 LVYWVTNSSFSIVQQLALKHPASRTMLGLPDKVVPAAARKPEEIDTLETTLES--PAKQLKISVENLTPKELIALSVKFL 380 (550)
Q Consensus 303 ~lYw~~s~~~~~~q~~~~~~p~~r~~l~i~~~~~~~~~~~s~~~~~~~~~~~~--~~~~~~~~~~~l~~~~l~~la~~~~ 380 (550)
.-|.+.+|+|++--..-.....+.+++.+.+.-.=+..-..-+. ......+. .....++..+...-.+++.+|..|+
T Consensus 422 esWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~-~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~ 500 (638)
T KOG1126|consen 422 ESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHES-IATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYL 500 (638)
T ss_pred HHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChh-hhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhhee
Confidence 35667788888755555555556666666432111000000000 00001111 1112223222223334445555555
Q ss_pred HcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHH
Q 008887 381 SKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACI 460 (550)
Q Consensus 381 ~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~ 460 (550)
++++++.|+-+|++|++++|.+......+|.++.+.|+.++|+++|++|+.+ +|.++ ...+..|.++.
T Consensus 501 Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~l-----d~kn~-------l~~~~~~~il~ 568 (638)
T KOG1126|consen 501 KQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHL-----DPKNP-------LCKYHRASILF 568 (638)
T ss_pred ccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhc-----CCCCc-------hhHHHHHHHHH
Confidence 5555555555555555555555555555555555555555555555555555 55544 13444555555
Q ss_pred HhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHH
Q 008887 461 RQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNE 526 (550)
Q Consensus 461 ~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~ 526 (550)
..+++++|+..+++.-+.- |++. .+++.+|.+|.++|+.+.|+..|..+..++|.-..
T Consensus 569 ~~~~~~eal~~LEeLk~~v-P~es-------~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~ 626 (638)
T KOG1126|consen 569 SLGRYVEALQELEELKELV-PQES-------SVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQ 626 (638)
T ss_pred hhcchHHHHHHHHHHHHhC-cchH-------HHHHHHHHHHHHHccchHHHHhhHHHhcCCCccch
Confidence 5555555555555555444 4444 55555555555555555555555555555554443
No 33
>PRK12370 invasion protein regulator; Provisional
Probab=99.39 E-value=8.8e-12 Score=136.32 Aligned_cols=146 Identities=14% Similarity=0.024 Sum_probs=125.3
Q ss_pred ChHHHHHHHHHHHHc---------CCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCC
Q 008887 368 TPKELIALSVKFLSK---------GDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGH 438 (550)
Q Consensus 368 ~~~~l~~la~~~~~~---------g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~ 438 (550)
++..+..+|..+... +++++|+..++++++.+|+++.++..+|.++...|++++|+++|++++++ +
T Consensus 294 ~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l-----~ 368 (553)
T PRK12370 294 SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLL-----S 368 (553)
T ss_pred cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----C
Confidence 455566777665533 34789999999999999999999999999999999999999999999999 8
Q ss_pred CCChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008887 439 PTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAA 518 (550)
Q Consensus 439 p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al 518 (550)
|+++ . +++++|.++...|++++|++.++++++++ |.++ ..+..++.++...|++++|++.+++++
T Consensus 369 P~~~-~------a~~~lg~~l~~~G~~~eAi~~~~~Al~l~-P~~~-------~~~~~~~~~~~~~g~~eeA~~~~~~~l 433 (553)
T PRK12370 369 PISA-D------IKYYYGWNLFMAGQLEEALQTINECLKLD-PTRA-------AAGITKLWITYYHTGIDDAIRLGDELR 433 (553)
T ss_pred CCCH-H------HHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCh-------hhHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 8887 3 77889999999999999999999999998 8876 566667777888999999999999999
Q ss_pred HcC-CCcHHHHHHHHh
Q 008887 519 AHN-PQYNELLEQLEN 533 (550)
Q Consensus 519 ~~~-p~~~~~~~~l~~ 533 (550)
+.+ |++...+..+..
T Consensus 434 ~~~~p~~~~~~~~la~ 449 (553)
T PRK12370 434 SQHLQDNPILLSMQVM 449 (553)
T ss_pred HhccccCHHHHHHHHH
Confidence 875 777776665544
No 34
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.39 E-value=1.7e-11 Score=136.48 Aligned_cols=138 Identities=17% Similarity=0.193 Sum_probs=126.7
Q ss_pred ChHHHHHHHHHHHHcCCCCC----hHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChh
Q 008887 368 TPKELIALSVKFLSKGDKER----PIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPE 443 (550)
Q Consensus 368 ~~~~l~~la~~~~~~g~~~~----A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~ 443 (550)
++.....+|..+...|++++ |+..|+++++.+|++..++..+|.++...|++++|+.++++++++ +|.++
T Consensus 245 ~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l-----~P~~~- 318 (656)
T PRK15174 245 GAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLAT-----HPDLP- 318 (656)
T ss_pred CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCCH-
Confidence 56677799999999999996 899999999999999999999999999999999999999999999 88877
Q ss_pred hHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 008887 444 AIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQ 523 (550)
Q Consensus 444 ~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~ 523 (550)
. ++.++|.++.+.|++++|++.|+++++.. |++. ..+..+|.++...|++++|++.|+++++.+|+
T Consensus 319 ~------a~~~La~~l~~~G~~~eA~~~l~~al~~~-P~~~-------~~~~~~a~al~~~G~~deA~~~l~~al~~~P~ 384 (656)
T PRK15174 319 Y------VRAMYARALRQVGQYTAASDEFVQLAREK-GVTS-------KWNRYAAAALLQAGKTSEAESVFEHYIQARAS 384 (656)
T ss_pred H------HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-ccch-------HHHHHHHHHHHHCCCHHHHHHHHHHHHHhChh
Confidence 3 67789999999999999999999999987 8665 66777899999999999999999999999988
Q ss_pred cH
Q 008887 524 YN 525 (550)
Q Consensus 524 ~~ 525 (550)
+.
T Consensus 385 ~~ 386 (656)
T PRK15174 385 HL 386 (656)
T ss_pred hc
Confidence 64
No 35
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.36 E-value=2.3e-11 Score=134.02 Aligned_cols=140 Identities=16% Similarity=0.093 Sum_probs=130.6
Q ss_pred ChHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHH
Q 008887 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDL 447 (550)
Q Consensus 368 ~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~ 447 (550)
+++.++.+|......|.+++|+.+++.+++..|++..++.+++.++.+.+++++|+..++++++. +|++.
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~-----~p~~~----- 154 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG-----GSSSA----- 154 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc-----CCCCH-----
Confidence 57788899999999999999999999999999999999999999999999999999999999999 88887
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHH
Q 008887 448 LIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNEL 527 (550)
Q Consensus 448 l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~ 527 (550)
.+++.+|.++.+.|++++|+++|++++..+ |+++ .++..+|.++...|+.++|...|+++++...+-...
T Consensus 155 --~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~-p~~~-------~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~ 224 (694)
T PRK15179 155 --REILLEAKSWDEIGQSEQADACFERLSRQH-PEFE-------NGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARK 224 (694)
T ss_pred --HHHHHHHHHHHHhcchHHHHHHHHHHHhcC-CCcH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHH
Confidence 377789999999999999999999999976 8888 999999999999999999999999999987655543
No 36
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.36 E-value=1.8e-11 Score=139.86 Aligned_cols=137 Identities=20% Similarity=0.163 Sum_probs=121.4
Q ss_pred HHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHH
Q 008887 374 ALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQ 453 (550)
Q Consensus 374 ~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~ 453 (550)
.++......|++++|+..|+++++.+|+ ..++.++|.++.+.|++++|+++|++++++ +|+++ . ++.
T Consensus 581 ~La~~l~~~Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l-----~Pd~~-~------a~~ 647 (987)
T PRK09782 581 WLHAQRYIPGQPELALNDLTRSLNIAPS-ANAYVARATIYRQRHNVPAAVSDLRAALEL-----EPNNS-N------YQA 647 (987)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCCH-H------HHH
Confidence 4444555569999999999999999996 899999999999999999999999999999 88887 3 778
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHHHHHH
Q 008887 454 WSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQL 531 (550)
Q Consensus 454 ~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~l 531 (550)
++|.++...|++++|++.|+++++.+ |+++ .++.++|.++...|++++|+.+|+++++++|+........
T Consensus 648 nLG~aL~~~G~~eeAi~~l~~AL~l~-P~~~-------~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~ 717 (987)
T PRK09782 648 ALGYALWDSGDIAQSREMLERAHKGL-PDDP-------ALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLT 717 (987)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCH-------HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhh
Confidence 89999999999999999999999998 8888 9999999999999999999999999999999887655433
No 37
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.33 E-value=6.9e-11 Score=114.85 Aligned_cols=158 Identities=18% Similarity=0.178 Sum_probs=130.3
Q ss_pred CChHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCCh---HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChh
Q 008887 367 LTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNI---NALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPE 443 (550)
Q Consensus 367 l~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~---~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~ 443 (550)
..++.++.+|..++..|++++|+..++++++.+|+++ .+++.+|.++...|++++|+..|+++++. +|+++.
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~-----~p~~~~ 105 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRL-----HPNHPD 105 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH-----CcCCCc
Confidence 4777889999999999999999999999999999876 67899999999999999999999999999 887774
Q ss_pred hHHHHHHHHHHHHHHHHHh--------cCHHHHHHHHHHHhcCCCCCCcccccc----------chhHHHHHHHHHHhcC
Q 008887 444 AIDLLIVASQWSGVACIRQ--------EKWEEGIAHLERIGNLKEPEEPKSKAH----------YYDGLVVLASALCNVG 505 (550)
Q Consensus 444 ~~~~l~~a~~~lg~~~~~~--------g~~~eA~~~~~~al~~~~p~~~~~~~~----------~~~~~~~La~~~~~~g 505 (550)
.. .+++.+|.++... |++++|++.++++++.. |++...... .......+|.+|.+.|
T Consensus 106 ~~----~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g 180 (235)
T TIGR03302 106 AD----YAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY-PNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRG 180 (235)
T ss_pred hH----HHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC-CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 32 2667899999876 89999999999999997 876522110 0112347889999999
Q ss_pred CHHHHHHHHHHHHHcCCCc---HHHHHHHHhh
Q 008887 506 RNAEAEKYLRLAAAHNPQY---NELLEQLENN 534 (550)
Q Consensus 506 ~~~eA~~~l~~al~~~p~~---~~~~~~l~~~ 534 (550)
++++|+..++++++..|+. .+++..+..+
T Consensus 181 ~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~ 212 (235)
T TIGR03302 181 AYVAAINRFETVVENYPDTPATEEALARLVEA 212 (235)
T ss_pred ChHHHHHHHHHHHHHCCCCcchHHHHHHHHHH
Confidence 9999999999999997765 3555555543
No 38
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.31 E-value=4.9e-11 Score=119.73 Aligned_cols=132 Identities=18% Similarity=0.157 Sum_probs=122.6
Q ss_pred ChHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHH
Q 008887 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDL 447 (550)
Q Consensus 368 ~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~ 447 (550)
...++.-+|-.|...++...|++.|++|++.+|.+.++|+.+|++|.-.+...=|+-+|++|++. -|.++ .
T Consensus 363 ~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~-----kPnDs-R--- 433 (559)
T KOG1155|consen 363 YLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALEL-----KPNDS-R--- 433 (559)
T ss_pred hhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhc-----CCCch-H---
Confidence 33455689999999999999999999999999999999999999999999999999999999999 78887 3
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008887 448 LIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAA 519 (550)
Q Consensus 448 l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~ 519 (550)
.|..||.||.+.++.++|+++|.+++... .... .++..||.+|.++++..+|..+|++.++
T Consensus 434 ---lw~aLG~CY~kl~~~~eAiKCykrai~~~-dte~-------~~l~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 434 ---LWVALGECYEKLNRLEEAIKCYKRAILLG-DTEG-------SALVRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred ---HHHHHHHHHHHhccHHHHHHHHHHHHhcc-ccch-------HHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 78889999999999999999999999997 6666 8999999999999999999999999888
No 39
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.29 E-value=3.2e-11 Score=115.70 Aligned_cols=111 Identities=20% Similarity=0.219 Sum_probs=76.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCC
Q 008887 404 NALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEE 483 (550)
Q Consensus 404 ~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~ 483 (550)
+-+..-|.-+++.++|++|+..|.+||++ +|+++ . .|-+.+.+|.++|.++.|++.++.++.++ |.
T Consensus 82 E~LK~eGN~~m~~~~Y~eAv~kY~~AI~l-----~P~nA-V------yycNRAAAy~~Lg~~~~AVkDce~Al~iD-p~- 147 (304)
T KOG0553|consen 82 ESLKNEGNKLMKNKDYQEAVDKYTEAIEL-----DPTNA-V------YYCNRAAAYSKLGEYEDAVKDCESALSID-PH- 147 (304)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHhc-----CCCcc-h------HHHHHHHHHHHhcchHHHHHHHHHHHhcC-hH-
Confidence 33455666677777777777777777777 66666 2 45566777777777777777777777776 53
Q ss_pred ccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHHHHHHHhh
Q 008887 484 PKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQLENN 534 (550)
Q Consensus 484 ~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~l~~~ 534 (550)
+..+|..||.+|..+|++++|++.|+++|+++|++..++..|+.+
T Consensus 148 ------yskay~RLG~A~~~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~A 192 (304)
T KOG0553|consen 148 ------YSKAYGRLGLAYLALGKYEEAIEAYKKALELDPDNESYKSNLKIA 192 (304)
T ss_pred ------HHHHHHHHHHHHHccCcHHHHHHHHHhhhccCCCcHHHHHHHHHH
Confidence 337777777777777777777777777777777777777776663
No 40
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.29 E-value=7.3e-11 Score=134.99 Aligned_cols=146 Identities=18% Similarity=0.166 Sum_probs=131.3
Q ss_pred hHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHH
Q 008887 369 PKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLL 448 (550)
Q Consensus 369 ~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l 448 (550)
+...+.+|..+...|++++|+.+|+++++.+|++...+..++......|++++|+..|+++++. +|+ . .
T Consensus 542 ~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l-----~P~-~-~---- 610 (987)
T PRK09782 542 NEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNI-----APS-A-N---- 610 (987)
T ss_pred cHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh-----CCC-H-H----
Confidence 4456688888999999999999999999999999888888888788889999999999999999 774 3 2
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHHH
Q 008887 449 IVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELL 528 (550)
Q Consensus 449 ~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~ 528 (550)
++.++|.++.+.|++++|++.|+++++.+ |+++ .++.++|.++.+.|++++|++.|+++++.+|++.+++
T Consensus 611 --a~~~LA~~l~~lG~~deA~~~l~~AL~l~-Pd~~-------~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~ 680 (987)
T PRK09782 611 --AYVARATIYRQRHNVPAAVSDLRAALELE-PNNS-------NYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALI 680 (987)
T ss_pred --HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCH-------HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 77889999999999999999999999998 9888 9999999999999999999999999999999999988
Q ss_pred HHHHhhH
Q 008887 529 EQLENND 535 (550)
Q Consensus 529 ~~l~~~~ 535 (550)
.++..+.
T Consensus 681 ~nLA~al 687 (987)
T PRK09782 681 RQLAYVN 687 (987)
T ss_pred HHHHHHH
Confidence 8777643
No 41
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.28 E-value=1.6e-10 Score=102.11 Aligned_cols=111 Identities=16% Similarity=0.144 Sum_probs=97.9
Q ss_pred HhhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Q 008887 396 LNKE-PDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLER 474 (550)
Q Consensus 396 L~~~-p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~ 474 (550)
...+ ++..+..+.+|..+++.|++++|...|+-+... +|.+. ..|++||.|+..+|++++|++.|.+
T Consensus 27 ~~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~-----Dp~~~-------~y~~gLG~~~Q~~g~~~~AI~aY~~ 94 (157)
T PRK15363 27 LDDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIY-----DAWSF-------DYWFRLGECCQAQKHWGEAIYAYGR 94 (157)
T ss_pred HCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CcccH-------HHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 4466 778889999999999999999999999999888 77776 3788999999999999999999999
Q ss_pred HhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHH
Q 008887 475 IGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNE 526 (550)
Q Consensus 475 al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~ 526 (550)
++.++ |+++ .++.++|.|+...|+.++|++.|+.+++...+.++
T Consensus 95 A~~L~-~ddp-------~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~~~~~ 138 (157)
T PRK15363 95 AAQIK-IDAP-------QAPWAAAECYLACDNVCYAIKALKAVVRICGEVSE 138 (157)
T ss_pred HHhcC-CCCc-------hHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccChh
Confidence 99998 9888 99999999999999999999999999998744443
No 42
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.28 E-value=5e-11 Score=114.83 Aligned_cols=198 Identities=15% Similarity=0.124 Sum_probs=152.1
Q ss_pred hhHHHHHHHHHhcCH--HHHhhhCCCCCCCCCCCCC-------------CccccccCcCCCCchhhccCccCCCChHHHH
Q 008887 309 NSSFSIVQQLALKHP--ASRTMLGLPDKVVPAAARK-------------PEEIDTLETTLESPAKQLKISVENLTPKELI 373 (550)
Q Consensus 309 s~~~~~~q~~~~~~p--~~r~~l~i~~~~~~~~~~~-------------s~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~ 373 (550)
+..++-+..++.++| +++.++.+-...+.+.+.. ...++++|+-+.+|+....- ..-++.
T Consensus 37 r~Yv~GlNfLLs~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~q-----r~lAl~ 111 (389)
T COG2956 37 RDYVKGLNFLLSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQ-----RLLALQ 111 (389)
T ss_pred HHHHhHHHHHhhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHH-----HHHHHH
Confidence 345555666666665 5666666655544433321 12466677777777653221 123556
Q ss_pred HHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHH
Q 008887 374 ALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQ 453 (550)
Q Consensus 374 ~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~ 453 (550)
++|..|+..|-+|+|+..|....+....-..++..|..+|....+|++|++..++...+ .+.+...+..++.+
T Consensus 112 qL~~Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~---~~q~~~~eIAqfyC---- 184 (389)
T COG2956 112 QLGRDYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKL---GGQTYRVEIAQFYC---- 184 (389)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHc---CCccchhHHHHHHH----
Confidence 99999999999999999999988776667789999999999999999999999988888 22223333333333
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHH
Q 008887 454 WSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNE 526 (550)
Q Consensus 454 ~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~ 526 (550)
.++..+....+.++|+..+.++++.+ |++. .+-..+|+++...|++++|++.++++++.||++..
T Consensus 185 ELAq~~~~~~~~d~A~~~l~kAlqa~-~~cv-------RAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~ 249 (389)
T COG2956 185 ELAQQALASSDVDRARELLKKALQAD-KKCV-------RASIILGRVELAKGDYQKAVEALERVLEQNPEYLS 249 (389)
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHhhC-ccce-------ehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHH
Confidence 48888999999999999999999998 9999 89999999999999999999999999999988754
No 43
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.27 E-value=9.2e-11 Score=139.02 Aligned_cols=147 Identities=22% Similarity=0.258 Sum_probs=128.2
Q ss_pred HHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhH---HHHH-
Q 008887 374 ALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAI---DLLI- 449 (550)
Q Consensus 374 ~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~---~~l~- 449 (550)
..|..+...|++++|+..|+++++.+|+++.++..+|.+|.+.|++++|+++|+++++. +|.+.... ..+.
T Consensus 274 ~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~-----~p~~~~~~~~~~ll~~ 348 (1157)
T PRK11447 274 AQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALAL-----DPHSSNRDKWESLLKV 348 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCccchhHHHHHHHh
Confidence 45888999999999999999999999999999999999999999999999999999999 77665211 0110
Q ss_pred ---HHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHH
Q 008887 450 ---VASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNE 526 (550)
Q Consensus 450 ---~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~ 526 (550)
.....+|.++.+.|++++|++.|+++++.+ |++. .++..+|.+|...|++++|++.|+++++.+|++..
T Consensus 349 ~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~-------~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~ 420 (1157)
T PRK11447 349 NRYWLLIQQGDAALKANNLAQAERLYQQARQVD-NTDS-------YAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTN 420 (1157)
T ss_pred hhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCH-------HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH
Confidence 122346888999999999999999999998 8887 89999999999999999999999999999999988
Q ss_pred HHHHHHh
Q 008887 527 LLEQLEN 533 (550)
Q Consensus 527 ~~~~l~~ 533 (550)
++..+..
T Consensus 421 a~~~L~~ 427 (1157)
T PRK11447 421 AVRGLAN 427 (1157)
T ss_pred HHHHHHH
Confidence 7766544
No 44
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.27 E-value=1.1e-10 Score=129.95 Aligned_cols=136 Identities=20% Similarity=0.123 Sum_probs=125.9
Q ss_pred HHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHH----HHHHHHHHHHHhhhcCCCCChhhHHHHH
Q 008887 374 ALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEE----AVEYLECAISKLFLAGHPTEPEAIDLLI 449 (550)
Q Consensus 374 ~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~e----A~~~~~~al~l~~~~~~p~~~~~~~~l~ 449 (550)
.++..+...|++++|+..|+++++.+|+++.+++.+|.++...|++++ |+..|+++++. +|++. .
T Consensus 217 ~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l-----~P~~~-~----- 285 (656)
T PRK15174 217 LAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQF-----NSDNV-R----- 285 (656)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhh-----CCCCH-H-----
Confidence 567788999999999999999999999999999999999999999996 89999999999 88776 2
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHHHH
Q 008887 450 VASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLE 529 (550)
Q Consensus 450 ~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~ 529 (550)
++..+|.++..+|++++|+..++++++.. |+++ .++..+|.+|.+.|++++|++.|+++++.+|++.....
T Consensus 286 -a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~-------~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~ 356 (656)
T PRK15174 286 -IVTLYADALIRTGQNEKAIPLLQQSLATH-PDLP-------YVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNR 356 (656)
T ss_pred -HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCH-------HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHH
Confidence 77889999999999999999999999998 8887 89999999999999999999999999999999866443
No 45
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.26 E-value=5.5e-11 Score=122.14 Aligned_cols=152 Identities=17% Similarity=0.162 Sum_probs=133.3
Q ss_pred HHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHH
Q 008887 373 IALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVAS 452 (550)
Q Consensus 373 ~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~ 452 (550)
+-+|..|...+++..|.+.|.+|+.+.|.++-.+..+|.+.+..+.|.+|..+|+++++..+.. ++... ...-.+
T Consensus 384 LYlgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~-~~e~~----~w~p~~ 458 (611)
T KOG1173|consen 384 LYLGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSV-LNEKI----FWEPTL 458 (611)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhc-ccccc----chhHHH
Confidence 4789999999999999999999999999999999999999999999999999999999653211 11111 111257
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHHHHHHH
Q 008887 453 QWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQLE 532 (550)
Q Consensus 453 ~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~l~ 532 (550)
.++|.++.+++++++|+.++++++... |.+. .++..+|-+|..+|+.+.|+++|.++|.++|++.-....|.
T Consensus 459 ~NLGH~~Rkl~~~~eAI~~~q~aL~l~-~k~~-------~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~ 530 (611)
T KOG1173|consen 459 NNLGHAYRKLNKYEEAIDYYQKALLLS-PKDA-------STHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLK 530 (611)
T ss_pred HhHHHHHHHHhhHHHHHHHHHHHHHcC-CCch-------hHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHH
Confidence 789999999999999999999999998 9888 99999999999999999999999999999999988777777
Q ss_pred hhHHH
Q 008887 533 NNDEE 537 (550)
Q Consensus 533 ~~~~~ 537 (550)
.+.++
T Consensus 531 ~aie~ 535 (611)
T KOG1173|consen 531 LAIED 535 (611)
T ss_pred HHHHh
Confidence 66555
No 46
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=99.25 E-value=3.3e-10 Score=115.21 Aligned_cols=152 Identities=24% Similarity=0.247 Sum_probs=139.7
Q ss_pred CChHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHH
Q 008887 367 LTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAID 446 (550)
Q Consensus 367 l~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~ 446 (550)
..+...+..|..++..|++++|++.++..++..|+|+..+...+.++...++.++|.+.+++++.+ +|..+ .
T Consensus 304 ~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l-----~P~~~-~-- 375 (484)
T COG4783 304 GGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALAL-----DPNSP-L-- 375 (484)
T ss_pred cchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc-----CCCcc-H--
Confidence 356677899999999999999999999999999999999999999999999999999999999999 78775 2
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHH
Q 008887 447 LLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNE 526 (550)
Q Consensus 447 ~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~ 526 (550)
.++++|.++.+.|++++|+..+.+.+..+ |+++ ..|..||++|.++|+..+|...+.+...++.+..+
T Consensus 376 ----l~~~~a~all~~g~~~eai~~L~~~~~~~-p~dp-------~~w~~LAqay~~~g~~~~a~~A~AE~~~~~G~~~~ 443 (484)
T COG4783 376 ----LQLNLAQALLKGGKPQEAIRILNRYLFND-PEDP-------NGWDLLAQAYAELGNRAEALLARAEGYALAGRLEQ 443 (484)
T ss_pred ----HHHHHHHHHHhcCChHHHHHHHHHHhhcC-CCCc-------hHHHHHHHHHHHhCchHHHHHHHHHHHHhCCCHHH
Confidence 77899999999999999999999999997 9999 99999999999999999999999999999999988
Q ss_pred HHHHHHhhHHHH
Q 008887 527 LLEQLENNDEEF 538 (550)
Q Consensus 527 ~~~~l~~~~~~~ 538 (550)
+...+..+.+..
T Consensus 444 A~~~l~~A~~~~ 455 (484)
T COG4783 444 AIIFLMRASQQV 455 (484)
T ss_pred HHHHHHHHHHhc
Confidence 888777754443
No 47
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.23 E-value=2.9e-11 Score=119.80 Aligned_cols=163 Identities=17% Similarity=0.199 Sum_probs=138.4
Q ss_pred CChHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCC------------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 008887 367 LTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDN------------INALILMGQTQLQKGLLEEAVEYLECAISKLF 434 (550)
Q Consensus 367 l~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~------------~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~ 434 (550)
.+.++++-.|.+++..++.+.|+.+|+++|+.+|++ ...+...|+-.++.|.+.+|.++|.+++.+
T Consensus 201 ~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~i-- 278 (486)
T KOG0550|consen 201 TNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNI-- 278 (486)
T ss_pred chhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcC--
Confidence 466788888999999999999999999999999875 345567799999999999999999999999
Q ss_pred hcCCCCChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHH
Q 008887 435 LAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYL 514 (550)
Q Consensus 435 ~~~~p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l 514 (550)
+|.+... ....|.++|.+..+.|+.++|+..++.+++++ +... .++...|.|+..++++++|++.|
T Consensus 279 ---dP~n~~~---naklY~nra~v~~rLgrl~eaisdc~~Al~iD-~syi-------kall~ra~c~l~le~~e~AV~d~ 344 (486)
T KOG0550|consen 279 ---DPSNKKT---NAKLYGNRALVNIRLGRLREAISDCNEALKID-SSYI-------KALLRRANCHLALEKWEEAVEDY 344 (486)
T ss_pred ---Cccccch---hHHHHHHhHhhhcccCCchhhhhhhhhhhhcC-HHHH-------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 7776532 33467899999999999999999999999998 7555 99999999999999999999999
Q ss_pred HHHHHcCCCcHHHHHHHHhhHHHHHhhhhhccccCC
Q 008887 515 RLAAAHNPQYNELLEQLENNDEEFVSDLSSSRRRDY 550 (550)
Q Consensus 515 ~~al~~~p~~~~~~~~l~~~~~~~~~~l~~~~r~~~ 550 (550)
+++.+...+ .+.+..+.++ ...|..++|+||
T Consensus 345 ~~a~q~~~s-~e~r~~l~~A----~~aLkkSkRkd~ 375 (486)
T KOG0550|consen 345 EKAMQLEKD-CEIRRTLREA----QLALKKSKRKDW 375 (486)
T ss_pred HHHHhhccc-cchHHHHHHH----HHHHHHhhhhhH
Confidence 999998877 5555555552 334677778887
No 48
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.22 E-value=1.5e-10 Score=116.45 Aligned_cols=122 Identities=16% Similarity=0.126 Sum_probs=110.2
Q ss_pred CCCChHHHHHHHHhhC---C-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHH
Q 008887 384 DKERPIPLLQLALNKE---P-DNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVAC 459 (550)
Q Consensus 384 ~~~~A~~~~~~aL~~~---p-~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~ 459 (550)
+.+.++..+.+++... | ..+..++.+|.+|...|++++|+..|++++++ +|+++ .+++++|.++
T Consensus 41 ~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l-----~P~~~-------~a~~~lg~~~ 108 (296)
T PRK11189 41 QQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALAL-----RPDMA-------DAYNYLGIYL 108 (296)
T ss_pred HHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc-----CCCCH-------HHHHHHHHHH
Confidence 5566777777888633 3 34778999999999999999999999999999 88887 3888999999
Q ss_pred HHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcH
Q 008887 460 IRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYN 525 (550)
Q Consensus 460 ~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~ 525 (550)
...|++++|++.|+++++++ |++. .++.++|.++...|++++|++.++++++.+|++.
T Consensus 109 ~~~g~~~~A~~~~~~Al~l~-P~~~-------~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~ 166 (296)
T PRK11189 109 TQAGNFDAAYEAFDSVLELD-PTYN-------YAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDP 166 (296)
T ss_pred HHCCCHHHHHHHHHHHHHhC-CCCH-------HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH
Confidence 99999999999999999998 9887 8999999999999999999999999999999986
No 49
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.22 E-value=8.6e-11 Score=112.80 Aligned_cols=120 Identities=21% Similarity=0.194 Sum_probs=107.3
Q ss_pred hHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHH
Q 008887 369 PKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLL 448 (550)
Q Consensus 369 ~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l 448 (550)
++.+-..|..++..++|++|+..|.+||+++|.++..|.+.+.+|.+.|.++.|++..+.|+.+ +|.+.
T Consensus 81 AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~i-----Dp~ys------ 149 (304)
T KOG0553|consen 81 AESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSI-----DPHYS------ 149 (304)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhc-----ChHHH------
Confidence 3455589999999999999999999999999999999999999999999999999999999999 66554
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHH
Q 008887 449 IVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNA 508 (550)
Q Consensus 449 ~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~ 508 (550)
.+|..||.+|..+|++++|++.|+++++++ |++. ....+|..+-.+.++.+
T Consensus 150 -kay~RLG~A~~~~gk~~~A~~aykKaLeld-P~Ne-------~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 150 -KAYGRLGLAYLALGKYEEAIEAYKKALELD-PDNE-------SYKSNLKIAEQKLNEPK 200 (304)
T ss_pred -HHHHHHHHHHHccCcHHHHHHHHHhhhccC-CCcH-------HHHHHHHHHHHHhcCCC
Confidence 488899999999999999999999999998 9887 77777777766666555
No 50
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.22 E-value=3.4e-10 Score=134.19 Aligned_cols=145 Identities=19% Similarity=0.170 Sum_probs=126.0
Q ss_pred HHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHH----
Q 008887 374 ALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLI---- 449 (550)
Q Consensus 374 ~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~---- 449 (550)
..|..+...|++++|++.|+++++.+|++..++..+|.++...|++++|+++|+++++. +|.+......+.
T Consensus 356 ~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~-----~p~~~~a~~~L~~l~~ 430 (1157)
T PRK11447 356 QQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRM-----DPGNTNAVRGLANLYR 430 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHH
Confidence 56888999999999999999999999999999999999999999999999999999999 787663221111
Q ss_pred -------------------------------HHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHH
Q 008887 450 -------------------------------VASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLA 498 (550)
Q Consensus 450 -------------------------------~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La 498 (550)
..+..+|.++...|++++|++.|+++++.+ |+++ .+++.+|
T Consensus 431 ~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~-------~~~~~LA 502 (1157)
T PRK11447 431 QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSV-------WLTYRLA 502 (1157)
T ss_pred hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCH-------HHHHHHH
Confidence 122346777888999999999999999998 9888 8999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCcHHHHHHH
Q 008887 499 SALCNVGRNAEAEKYLRLAAAHNPQYNELLEQL 531 (550)
Q Consensus 499 ~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~l 531 (550)
.+|.+.|++++|+..++++++.+|++.+.+..+
T Consensus 503 ~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~ 535 (1157)
T PRK11447 503 QDLRQAGQRSQADALMRRLAQQKPNDPEQVYAY 535 (1157)
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 999999999999999999999999998765543
No 51
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.21 E-value=4.7e-10 Score=117.40 Aligned_cols=139 Identities=15% Similarity=0.096 Sum_probs=96.1
Q ss_pred HHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHH
Q 008887 371 ELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIV 450 (550)
Q Consensus 371 ~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~ 450 (550)
.+..+|..+...|++++|+..|+++++.+|.+..++..++.++...|++++|++.++++++. +|.+... ....
T Consensus 109 ~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~--~~~~ 181 (389)
T PRK11788 109 ALQELGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKL-----GGDSLRV--EIAH 181 (389)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHh-----cCCcchH--HHHH
Confidence 34567777777777777777777777777777777777777777777777777777777766 4443211 1111
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCc
Q 008887 451 ASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQY 524 (550)
Q Consensus 451 a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~ 524 (550)
.+..+|.++.++|++++|+++|+++++.. |++. .+++.+|.+|.+.|++++|.+.++++++.+|++
T Consensus 182 ~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~-------~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~ 247 (389)
T PRK11788 182 FYCELAQQALARGDLDAARALLKKALAAD-PQCV-------RASILLGDLALAQGDYAAAIEALERVEEQDPEY 247 (389)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhHC-cCCH-------HHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhh
Confidence 34456777777777777777777777765 6555 667777777777777777777777777766654
No 52
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.21 E-value=1.2e-10 Score=120.16 Aligned_cols=94 Identities=16% Similarity=0.199 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHH
Q 008887 371 ELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIV 450 (550)
Q Consensus 371 ~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~ 450 (550)
+.++.|..+++.|+..+|.-+|+.+++.+|++.++|..||.+....++-..|+..+++|+++ +|++- +
T Consensus 287 dPf~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~L-----dP~Nl-------e 354 (579)
T KOG1125|consen 287 DPFKEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLEL-----DPTNL-------E 354 (579)
T ss_pred ChHHHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhc-----CCccH-------H
Confidence 34566666666666666666666666666666666666666666666666666666666666 55554 1
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHh
Q 008887 451 ASQWSGVACIRQEKWEEGIAHLERIG 476 (550)
Q Consensus 451 a~~~lg~~~~~~g~~~eA~~~~~~al 476 (550)
+...||++|...|.-.+|++++++-+
T Consensus 355 aLmaLAVSytNeg~q~~Al~~L~~Wi 380 (579)
T KOG1125|consen 355 ALMALAVSYTNEGLQNQALKMLDKWI 380 (579)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 33344455554444444554444443
No 53
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.21 E-value=4.6e-10 Score=109.04 Aligned_cols=143 Identities=18% Similarity=0.244 Sum_probs=121.0
Q ss_pred HHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChH---HHHHHHHHHHHc--------CCHHHHHHHHHHHHHHhhhcCC
Q 008887 370 KELIALSVKFLSKGDKERPIPLLQLALNKEPDNIN---ALILMGQTQLQK--------GLLEEAVEYLECAISKLFLAGH 438 (550)
Q Consensus 370 ~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~---a~~~lg~~~~~~--------g~~~eA~~~~~~al~l~~~~~~ 438 (550)
+..+.+|..+...|++++|++.|+++++.+|++.. +++.+|.++... |++++|++.++++++. +
T Consensus 71 ~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-----~ 145 (235)
T TIGR03302 71 QAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR-----Y 145 (235)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH-----C
Confidence 46679999999999999999999999999998876 789999999987 8899999999999999 8
Q ss_pred CCChhhHHHHH----------HHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHH
Q 008887 439 PTEPEAIDLLI----------VASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNA 508 (550)
Q Consensus 439 p~~~~~~~~l~----------~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~ 508 (550)
|.+......+. .....+|..+...|++++|+..++++++.. |+.+ ...++++.+|.++...|+++
T Consensus 146 p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~----~~~~a~~~l~~~~~~lg~~~ 220 (235)
T TIGR03302 146 PNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVENY-PDTP----ATEEALARLVEAYLKLGLKD 220 (235)
T ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHC-CCCc----chHHHHHHHHHHHHHcCCHH
Confidence 88764332221 122467889999999999999999999987 7654 45589999999999999999
Q ss_pred HHHHHHHHHHHcCC
Q 008887 509 EAEKYLRLAAAHNP 522 (550)
Q Consensus 509 eA~~~l~~al~~~p 522 (550)
+|..+++......|
T Consensus 221 ~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 221 LAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHHHhhCC
Confidence 99998887766554
No 54
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.21 E-value=3.7e-10 Score=118.14 Aligned_cols=141 Identities=24% Similarity=0.253 Sum_probs=124.1
Q ss_pred HHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHH
Q 008887 372 LIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVA 451 (550)
Q Consensus 372 l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a 451 (550)
...+|..+...|++++|++.|+++++.+|++..+++.+|.++.+.|++++|++.++++++. +|.+.. .+
T Consensus 183 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-----~p~~~~------~~ 251 (389)
T PRK11788 183 YCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQ-----DPEYLS------EV 251 (389)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-----ChhhHH------HH
Confidence 4478889999999999999999999999999999999999999999999999999999988 554431 25
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHHHHHH
Q 008887 452 SQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQL 531 (550)
Q Consensus 452 ~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~l 531 (550)
+..++.++...|++++|++.++++++.. |+.. .+..++.++.+.|++++|...++++++.+|++..+...+
T Consensus 252 ~~~l~~~~~~~g~~~~A~~~l~~~~~~~-p~~~--------~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~ 322 (389)
T PRK11788 252 LPKLMECYQALGDEAEGLEFLRRALEEY-PGAD--------LLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLL 322 (389)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCch--------HHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 6679999999999999999999999986 7543 448899999999999999999999999999998766444
Q ss_pred H
Q 008887 532 E 532 (550)
Q Consensus 532 ~ 532 (550)
.
T Consensus 323 ~ 323 (389)
T PRK11788 323 D 323 (389)
T ss_pred H
Confidence 3
No 55
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.20 E-value=1.5e-10 Score=116.97 Aligned_cols=132 Identities=22% Similarity=0.215 Sum_probs=125.7
Q ss_pred HHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHH
Q 008887 372 LIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVA 451 (550)
Q Consensus 372 l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a 451 (550)
++.+|..|....+.++-.+.|.+|.+++|.++.+|+..|++++-.+++++|+..|++++++ +|.+. .+
T Consensus 363 yI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L-----~pe~~-------~~ 430 (606)
T KOG0547|consen 363 YIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISL-----DPENA-------YA 430 (606)
T ss_pred HHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhc-----Chhhh-------HH
Confidence 6689999999999999999999999999999999999999999999999999999999999 67665 37
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 008887 452 SQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQ 523 (550)
Q Consensus 452 ~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~ 523 (550)
+..++.+.+++++++++...|+++++.. |+++ +++...|+++..++++++|.+.|..++++.|.
T Consensus 431 ~iQl~~a~Yr~~k~~~~m~~Fee~kkkF-P~~~-------Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~ 494 (606)
T KOG0547|consen 431 YIQLCCALYRQHKIAESMKTFEEAKKKF-PNCP-------EVYNLFAEILTDQQQFDKAVKQYDKAIELEPR 494 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCc-------hHHHHHHHHHhhHHhHHHHHHHHHHHHhhccc
Confidence 7889999999999999999999999999 9999 99999999999999999999999999999887
No 56
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.17 E-value=2.7e-10 Score=100.71 Aligned_cols=100 Identities=12% Similarity=0.058 Sum_probs=94.8
Q ss_pred ChHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHH
Q 008887 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDL 447 (550)
Q Consensus 368 ~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~ 447 (550)
+-+.++.+|..++..|++++|+..|+.+...+|.+...|++||.++..+|+|++|++.|.+++.+ +|+++ .
T Consensus 34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L-----~~ddp-~--- 104 (157)
T PRK15363 34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQI-----KIDAP-Q--- 104 (157)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-----CCCCc-h---
Confidence 44577899999999999999999999999999999999999999999999999999999999999 89888 3
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCC
Q 008887 448 LIVASQWSGVACIRQEKWEEGIAHLERIGNLK 479 (550)
Q Consensus 448 l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~ 479 (550)
.++++|.|+...|+.++|.+.|+.++...
T Consensus 105 ---~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 105 ---APWAAAECYLACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred ---HHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 88899999999999999999999999986
No 57
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.17 E-value=6.6e-11 Score=118.24 Aligned_cols=132 Identities=26% Similarity=0.345 Sum_probs=99.3
Q ss_pred ChHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHH
Q 008887 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDL 447 (550)
Q Consensus 368 ~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~ 447 (550)
++..+...|..+...|+.++|++.|+++++.+|++..+...++.++...|+++++.+.++...+. .|.++ .
T Consensus 145 ~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~-----~~~~~-~--- 215 (280)
T PF13429_consen 145 SARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKA-----APDDP-D--- 215 (280)
T ss_dssp -HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH------HTSC-C---
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHH-----CcCHH-H---
Confidence 56677799999999999999999999999999999999999999999999999988888888777 55555 2
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008887 448 LIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAA 519 (550)
Q Consensus 448 l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~ 519 (550)
.+..+|.++...|++++|+.+|+++++.. |+|+ ..+..+|.++.+.|+.++|.++++++++
T Consensus 216 ---~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~d~-------~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 216 ---LWDALAAAYLQLGRYEEALEYLEKALKLN-PDDP-------LWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp ---HCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT-H-------HHHHHHHHHHT-----------------
T ss_pred ---HHHHHHHHhcccccccccccccccccccc-cccc-------cccccccccccccccccccccccccccc
Confidence 45578999999999999999999999987 9998 9999999999999999999999998875
No 58
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.16 E-value=1.1e-09 Score=126.01 Aligned_cols=153 Identities=21% Similarity=0.194 Sum_probs=122.2
Q ss_pred ChHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChh----
Q 008887 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPE---- 443 (550)
Q Consensus 368 ~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~---- 443 (550)
+++.++..|..++..|++++|+..++++++.+|+++.+++.+|.+|...|++++|+..++++++. .|.+..
T Consensus 21 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~~~~ 95 (899)
T TIGR02917 21 SPESLIEAAKSYLQKNKYKAAIIQLKNALQKDPNDAEARFLLGKIYLALGDYAAAEKELRKALSL-----GYPKNQVLPL 95 (899)
T ss_pred CHHHHHHHHHHHHHcCChHhHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCChhhhHHH
Confidence 44567788999999999999999999999999999999999999999999999999999998876 443221
Q ss_pred ------------------------hHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHH
Q 008887 444 ------------------------AIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLAS 499 (550)
Q Consensus 444 ------------------------~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~ 499 (550)
........+..+|.++...|++++|++.|+++++.+ |++. .++..+|.
T Consensus 96 ~a~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~-------~~~~~la~ 167 (899)
T TIGR02917 96 LARAYLLQGKFQQVLDELPGKTLLDDEGAAELLALRGLAYLGLGQLELAQKSYEQALAID-PRSL-------YAKLGLAQ 167 (899)
T ss_pred HHHHHHHCCCHHHHHHhhcccccCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCh-------hhHHHHHH
Confidence 011112356678899999999999999999999887 7776 77888888
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCcHHHHHHHHh
Q 008887 500 ALCNVGRNAEAEKYLRLAAAHNPQYNELLEQLEN 533 (550)
Q Consensus 500 ~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~l~~ 533 (550)
++...|++++|.+.++++++.+|++..++..+..
T Consensus 168 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 201 (899)
T TIGR02917 168 LALAENRFDEARALIDEVLTADPGNVDALLLKGD 201 (899)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHH
Confidence 8888888888888888888888877766555443
No 59
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.16 E-value=4.3e-10 Score=115.92 Aligned_cols=114 Identities=21% Similarity=0.269 Sum_probs=105.7
Q ss_pred HHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHH
Q 008887 371 ELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIV 450 (550)
Q Consensus 371 ~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~ 450 (550)
.+...|..++..|++++|+++|+++++.+|++..+++.+|.+|...|++++|+..+++++++ +|.++ .
T Consensus 4 ~l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l-----~P~~~-------~ 71 (356)
T PLN03088 4 DLEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIEL-----DPSLA-------K 71 (356)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CcCCH-------H
Confidence 56788999999999999999999999999999999999999999999999999999999999 88776 3
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhc
Q 008887 451 ASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNV 504 (550)
Q Consensus 451 a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~ 504 (550)
+++.+|.++...|++++|+..|+++++++ |++. .+...++.|..++
T Consensus 72 a~~~lg~~~~~lg~~~eA~~~~~~al~l~-P~~~-------~~~~~l~~~~~kl 117 (356)
T PLN03088 72 AYLRKGTACMKLEEYQTAKAALEKGASLA-PGDS-------RFTKLIKECDEKI 117 (356)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCH-------HHHHHHHHHHHHH
Confidence 78899999999999999999999999998 9888 8888888886655
No 60
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.15 E-value=2.6e-10 Score=113.96 Aligned_cols=151 Identities=24% Similarity=0.284 Sum_probs=117.4
Q ss_pred ChHHHHHHHHHHHHcCCCCChHHHHHHHHhhC--CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhH
Q 008887 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKE--PDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAI 445 (550)
Q Consensus 368 ~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~--p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~ 445 (550)
++..+......+...++++++.+.++++.... ++++..+..+|.++.+.|++++|+++|+++++. +|+++ .
T Consensus 109 ~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~-----~P~~~-~- 181 (280)
T PF13429_consen 109 DPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALEL-----DPDDP-D- 181 (280)
T ss_dssp ---------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH------TT-H-H-
T ss_pred ccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCCCH-H-
Confidence 34444466677899999999999999987654 678899999999999999999999999999999 88877 2
Q ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcH
Q 008887 446 DLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYN 525 (550)
Q Consensus 446 ~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~ 525 (550)
+...++..+...|+++++.+.+++..+.. |+++ ..+..+|.+|..+|++++|...++++++.+|++.
T Consensus 182 -----~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~-------~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~ 248 (280)
T PF13429_consen 182 -----ARNALAWLLIDMGDYDEAREALKRLLKAA-PDDP-------DLWDALAAAYLQLGRYEEALEYLEKALKLNPDDP 248 (280)
T ss_dssp -----HHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSC-------CHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-H
T ss_pred -----HHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHH-------HHHHHHHHHhcccccccccccccccccccccccc
Confidence 56678999999999999999988887776 7777 7889999999999999999999999999999999
Q ss_pred HHHHHHHhhHHHH
Q 008887 526 ELLEQLENNDEEF 538 (550)
Q Consensus 526 ~~~~~l~~~~~~~ 538 (550)
..+..+..+....
T Consensus 249 ~~~~~~a~~l~~~ 261 (280)
T PF13429_consen 249 LWLLAYADALEQA 261 (280)
T ss_dssp HHHHHHHHHHT--
T ss_pred ccccccccccccc
Confidence 9888887754443
No 61
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.13 E-value=1.5e-09 Score=124.89 Aligned_cols=144 Identities=17% Similarity=0.207 Sum_probs=117.4
Q ss_pred HHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHH
Q 008887 370 KELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLI 449 (550)
Q Consensus 370 ~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~ 449 (550)
.....++..+...|++++|++.++++++.+|++..+++.+|.+|...|++++|+++|+++++. +|.++ .
T Consensus 737 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-----~p~~~-~----- 805 (899)
T TIGR02917 737 QNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKK-----APDNA-V----- 805 (899)
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHh-----CCCCH-H-----
Confidence 445567777788888888888888888888888888888888888888888888888888888 66665 2
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHHHH
Q 008887 450 VASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLE 529 (550)
Q Consensus 450 ~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~ 529 (550)
++.++|..+...|+ ++|+++++++++.. |+++ ..+..+|.++...|++++|...++++++.+|.+.+...
T Consensus 806 -~~~~l~~~~~~~~~-~~A~~~~~~~~~~~-~~~~-------~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 875 (899)
T TIGR02917 806 -VLNNLAWLYLELKD-PRALEYAEKALKLA-PNIP-------AILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRY 875 (899)
T ss_pred -HHHHHHHHHHhcCc-HHHHHHHHHHHhhC-CCCc-------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHH
Confidence 66678888888888 77888888888886 7776 78888999999999999999999999999998888776
Q ss_pred HHHhh
Q 008887 530 QLENN 534 (550)
Q Consensus 530 ~l~~~ 534 (550)
.+..+
T Consensus 876 ~l~~~ 880 (899)
T TIGR02917 876 HLALA 880 (899)
T ss_pred HHHHH
Confidence 66554
No 62
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.11 E-value=1e-09 Score=103.49 Aligned_cols=106 Identities=15% Similarity=0.213 Sum_probs=96.2
Q ss_pred CCCChHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHH-HHcCC--HHHHHHHHHHHHHHhhhcCCCCC
Q 008887 365 ENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQ-LQKGL--LEEAVEYLECAISKLFLAGHPTE 441 (550)
Q Consensus 365 ~~l~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~-~~~g~--~~eA~~~~~~al~l~~~~~~p~~ 441 (550)
+.-+++.+..+|..+...|++++|+..|+++++.+|+++.++..+|.++ ...|+ +++|.+.++++++. +|++
T Consensus 69 ~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~-----dP~~ 143 (198)
T PRK10370 69 NPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALAL-----DANE 143 (198)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHh-----CCCC
Confidence 3347888899999999999999999999999999999999999999975 67787 59999999999999 8888
Q ss_pred hhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCC
Q 008887 442 PEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPE 482 (550)
Q Consensus 442 ~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~ 482 (550)
. . +++.+|.++.+.|++++|+.+++++++..+|+
T Consensus 144 ~-~------al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~ 177 (198)
T PRK10370 144 V-T------ALMLLASDAFMQADYAQAIELWQKVLDLNSPR 177 (198)
T ss_pred h-h------HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 7 3 78899999999999999999999999998443
No 63
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.11 E-value=3.8e-09 Score=99.82 Aligned_cols=129 Identities=20% Similarity=0.156 Sum_probs=112.7
Q ss_pred ChHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHH
Q 008887 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDL 447 (550)
Q Consensus 368 ~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~ 447 (550)
+.+.+..+|......|++.+|+..++++...+|++.++|..+|.+|.+.|++++|...|.+++++ .|+++
T Consensus 99 d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L-----~~~~p----- 168 (257)
T COG5010 99 DRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALEL-----APNEP----- 168 (257)
T ss_pred cHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHh-----ccCCc-----
Confidence 34444468999999999999999999999999999999999999999999999999999999999 77777
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHH
Q 008887 448 LIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRL 516 (550)
Q Consensus 448 l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~ 516 (550)
....|+|..++-.|+++.|..++.++.... +.+. .+..+++.+....|++++|...-.+
T Consensus 169 --~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~-------~v~~NLAl~~~~~g~~~~A~~i~~~ 227 (257)
T COG5010 169 --SIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADS-------RVRQNLALVVGLQGDFREAEDIAVQ 227 (257)
T ss_pred --hhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCch-------HHHHHHHHHHhhcCChHHHHhhccc
Confidence 267789999999999999999999988875 6566 8889999999999999999876543
No 64
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.10 E-value=3e-09 Score=120.86 Aligned_cols=146 Identities=12% Similarity=0.115 Sum_probs=108.1
Q ss_pred CChHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHH
Q 008887 367 LTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAID 446 (550)
Q Consensus 367 l~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~ 446 (550)
+++..+.....+....|+.++|++.++++...+|....++..+|.++...|++++|+++++++++. +|.++ .
T Consensus 13 ~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~-----~P~~~-~-- 84 (765)
T PRK10049 13 LSNNQIADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSL-----EPQND-D-- 84 (765)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCH-H--
Confidence 455566666677777777777777777777777777777777777777778888888777777777 66665 2
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHH
Q 008887 447 LLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNE 526 (550)
Q Consensus 447 ~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~ 526 (550)
++..++.++...|++++|++.++++++.. |+++ . +..+|.++...|++++|+..++++++.+|++.+
T Consensus 85 ----a~~~la~~l~~~g~~~eA~~~l~~~l~~~-P~~~-------~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~ 151 (765)
T PRK10049 85 ----YQRGLILTLADAGQYDEALVKAKQLVSGA-PDKA-------N-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQ 151 (765)
T ss_pred ----HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCH-------H-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH
Confidence 45567777777778888888887777776 7666 6 777777777777788888888877777777777
Q ss_pred HHHHHHh
Q 008887 527 LLEQLEN 533 (550)
Q Consensus 527 ~~~~l~~ 533 (550)
++..+..
T Consensus 152 ~~~~la~ 158 (765)
T PRK10049 152 YPTEYVQ 158 (765)
T ss_pred HHHHHHH
Confidence 6555443
No 65
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.10 E-value=2.1e-09 Score=101.58 Aligned_cols=119 Identities=25% Similarity=0.287 Sum_probs=112.5
Q ss_pred HHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHH
Q 008887 373 IALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVAS 452 (550)
Q Consensus 373 ~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~ 452 (550)
.+++..+...|+-+.+.....++...+|.+...+..+|......|++.+|+..++++.++ +|++. ++|
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l-----~p~d~-------~~~ 137 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL-----APTDW-------EAW 137 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc-----CCCCh-------hhh
Confidence 688889999999999999999999999999999999999999999999999999999999 88887 388
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHH
Q 008887 453 QWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAE 511 (550)
Q Consensus 453 ~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~ 511 (550)
..+|.+|.+.|+.++|...|.+++++. ++++ .+..++|..|.-.||++.|+
T Consensus 138 ~~lgaaldq~Gr~~~Ar~ay~qAl~L~-~~~p-------~~~nNlgms~~L~gd~~~A~ 188 (257)
T COG5010 138 NLLGAALDQLGRFDEARRAYRQALELA-PNEP-------SIANNLGMSLLLRGDLEDAE 188 (257)
T ss_pred hHHHHHHHHccChhHHHHHHHHHHHhc-cCCc-------hhhhhHHHHHHHcCCHHHHH
Confidence 889999999999999999999999998 9888 99999999999999999886
No 66
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.08 E-value=8.5e-10 Score=116.43 Aligned_cols=144 Identities=19% Similarity=0.159 Sum_probs=121.0
Q ss_pred HHHHHHHHcCCCCChHHHHHHHHhh--------CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhH
Q 008887 374 ALSVKFLSKGDKERPIPLLQLALNK--------EPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAI 445 (550)
Q Consensus 374 ~la~~~~~~g~~~~A~~~~~~aL~~--------~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~ 445 (550)
.+|..|...+++++|+..|++|+.. +|..+.++.+||.+|...|++++|..++++|+++....-...+++.
T Consensus 246 ~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v- 324 (508)
T KOG1840|consen 246 ILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEV- 324 (508)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHH-
Confidence 5999999999999999999999984 3555678999999999999999999999999999755333344422
Q ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 008887 446 DLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHN 521 (550)
Q Consensus 446 ~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~ 521 (550)
...+.+++..+...+++++|..++++++++.......++......+.+||.+|..+|+++||++.+++++.+.
T Consensus 325 ---~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~ 397 (508)
T KOG1840|consen 325 ---AAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQIL 397 (508)
T ss_pred ---HHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence 2356679999999999999999999999886322344444677899999999999999999999999999876
No 67
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.07 E-value=2.6e-09 Score=110.14 Aligned_cols=109 Identities=16% Similarity=0.144 Sum_probs=100.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCcc
Q 008887 406 LILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPK 485 (550)
Q Consensus 406 ~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~ 485 (550)
+...|..++..|+|++|+++|++++++ +|.+. . +++++|.++...|++++|+..++++++++ |.+.
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~-----~P~~~-~------a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~- 70 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDL-----DPNNA-E------LYADRAQANIKLGNFTEAVADANKAIELD-PSLA- 70 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCH-H------HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCH-
Confidence 566789999999999999999999999 88877 3 78899999999999999999999999998 8877
Q ss_pred ccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHHHHHHHhh
Q 008887 486 SKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQLENN 534 (550)
Q Consensus 486 ~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~l~~~ 534 (550)
.+++.+|.+|..+|++++|+..|+++++++|++..+...+...
T Consensus 71 ------~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~ 113 (356)
T PLN03088 71 ------KAYLRKGTACMKLEEYQTAKAALEKGASLAPGDSRFTKLIKEC 113 (356)
T ss_pred ------HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 8999999999999999999999999999999999987777664
No 68
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.07 E-value=1.8e-09 Score=95.11 Aligned_cols=104 Identities=17% Similarity=0.208 Sum_probs=96.2
Q ss_pred ChHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHH
Q 008887 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDL 447 (550)
Q Consensus 368 ~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~ 447 (550)
+....+.+|..+...|++++|.+.+++++..+|++..++..+|.++...|++++|+.+++++++. +|.++ .
T Consensus 16 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-----~p~~~-~--- 86 (135)
T TIGR02552 16 QLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL-----DPDDP-R--- 86 (135)
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----CCCCh-H---
Confidence 45567799999999999999999999999999999999999999999999999999999999999 77776 2
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCc
Q 008887 448 LIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEP 484 (550)
Q Consensus 448 l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~ 484 (550)
.++.+|.++...|++++|++.++++++.+ |++.
T Consensus 87 ---~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~ 119 (135)
T TIGR02552 87 ---PYFHAAECLLALGEPESALKALDLAIEIC-GENP 119 (135)
T ss_pred ---HHHHHHHHHHHcCCHHHHHHHHHHHHHhc-cccc
Confidence 77889999999999999999999999998 7766
No 69
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.07 E-value=2.7e-10 Score=109.74 Aligned_cols=146 Identities=18% Similarity=0.218 Sum_probs=130.0
Q ss_pred HHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHH
Q 008887 371 ELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIV 450 (550)
Q Consensus 371 ~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~ 450 (550)
-+...|..+...+++++|+++|+++++.+|.+.++...+|.-|+..++.+-|+.+|++.++. .-.++ +
T Consensus 292 ~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqm-----G~~sp-------e 359 (478)
T KOG1129|consen 292 YLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQM-----GAQSP-------E 359 (478)
T ss_pred hhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHh-----cCCCh-------H
Confidence 34488899999999999999999999999999999999999999999999999999999999 55566 2
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHHHHH
Q 008887 451 ASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQ 530 (550)
Q Consensus 451 a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~ 530 (550)
.+.|+|.|++..+++|-++..|++++... +.++ ...++|+++|.+....||+.-|.++|+-++..++++.+++++
T Consensus 360 Lf~NigLCC~yaqQ~D~~L~sf~RAlsta--t~~~---~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnN 434 (478)
T KOG1129|consen 360 LFCNIGLCCLYAQQIDLVLPSFQRALSTA--TQPG---QAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNN 434 (478)
T ss_pred HHhhHHHHHHhhcchhhhHHHHHHHHhhc--cCcc---hhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHh
Confidence 66789999999999999999999999874 2221 234899999999999999999999999999999999999999
Q ss_pred HHh
Q 008887 531 LEN 533 (550)
Q Consensus 531 l~~ 533 (550)
|.-
T Consensus 435 Lav 437 (478)
T KOG1129|consen 435 LAV 437 (478)
T ss_pred HHH
Confidence 876
No 70
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.06 E-value=1.5e-09 Score=114.64 Aligned_cols=146 Identities=23% Similarity=0.144 Sum_probs=126.6
Q ss_pred HHHHHHHHHHcCCCCChHHHHHHHHhh--------CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChh
Q 008887 372 LIALSVKFLSKGDKERPIPLLQLALNK--------EPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPE 443 (550)
Q Consensus 372 l~~la~~~~~~g~~~~A~~~~~~aL~~--------~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~ 443 (550)
...+|..|..+|+|++|+..+++|++. .|.-......+|.+|...+++++|+..|++|+.+......++++.
T Consensus 202 ~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~ 281 (508)
T KOG1840|consen 202 LRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPA 281 (508)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHH
Confidence 347999999999999999999999997 555566667799999999999999999999999987666777773
Q ss_pred hHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 008887 444 AIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHN 521 (550)
Q Consensus 444 ~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~ 521 (550)
.. .++.+||.+|.++|++++|..++++|+++.+.....++......+..++.++..++++++|..++++++++.
T Consensus 282 va----~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~ 355 (508)
T KOG1840|consen 282 VA----ATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIY 355 (508)
T ss_pred HH----HHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence 32 467789999999999999999999999986444555666778889999999999999999999999998865
No 71
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.06 E-value=6.9e-10 Score=114.63 Aligned_cols=103 Identities=21% Similarity=0.177 Sum_probs=96.4
Q ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCC
Q 008887 401 DNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKE 480 (550)
Q Consensus 401 ~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~ 480 (550)
.++++...||.+|...|+|++|+++|+.|+.. +|++. ..|+.||..+....+.++|+..|++|+++.
T Consensus 428 ~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v-----~Pnd~-------~lWNRLGAtLAN~~~s~EAIsAY~rALqLq- 494 (579)
T KOG1125|consen 428 IDPDVQSGLGVLYNLSGEFDRAVDCFEAALQV-----KPNDY-------LLWNRLGATLANGNRSEEAISAYNRALQLQ- 494 (579)
T ss_pred CChhHHhhhHHHHhcchHHHHHHHHHHHHHhc-----CCchH-------HHHHHhhHHhcCCcccHHHHHHHHHHHhcC-
Confidence 57888899999999999999999999999999 88776 389999999999999999999999999998
Q ss_pred CCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 008887 481 PEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQ 523 (550)
Q Consensus 481 p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~ 523 (550)
|... +++++||.+++.+|.|+||..+|-.+|.+++.
T Consensus 495 P~yV-------R~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~k 530 (579)
T KOG1125|consen 495 PGYV-------RVRYNLGISCMNLGAYKEAVKHLLEALSMQRK 530 (579)
T ss_pred CCee-------eeehhhhhhhhhhhhHHHHHHHHHHHHHhhhc
Confidence 9888 99999999999999999999999999998755
No 72
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.05 E-value=3.8e-09 Score=106.99 Aligned_cols=148 Identities=19% Similarity=0.188 Sum_probs=137.2
Q ss_pred hHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHH
Q 008887 369 PKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLL 448 (550)
Q Consensus 369 ~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l 448 (550)
+.++.-.|..++-.|++-.|.+.++++++++|.+...|..+|.+|.+..+.++-.+.|.+|.++ +|.++ .
T Consensus 326 A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~l-----dp~n~-d---- 395 (606)
T KOG0547|consen 326 AEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDL-----DPENP-D---- 395 (606)
T ss_pred HHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhc-----CCCCC-c----
Confidence 4566678888899999999999999999999999999999999999999999999999999999 99998 4
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHHH
Q 008887 449 IVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELL 528 (550)
Q Consensus 449 ~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~ 528 (550)
.||..|..++-++++++|++.|++++.++ |++. .++..++.+.+++++.++++..|+++.+.-|+.++..
T Consensus 396 --vYyHRgQm~flL~q~e~A~aDF~Kai~L~-pe~~-------~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy 465 (606)
T KOG0547|consen 396 --VYYHRGQMRFLLQQYEEAIADFQKAISLD-PENA-------YAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVY 465 (606)
T ss_pred --hhHhHHHHHHHHHHHHHHHHHHHHHhhcC-hhhh-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHH
Confidence 88999999999999999999999999998 9888 9999999999999999999999999999999999988
Q ss_pred HHHHhhHH
Q 008887 529 EQLENNDE 536 (550)
Q Consensus 529 ~~l~~~~~ 536 (550)
....+++.
T Consensus 466 ~~fAeiLt 473 (606)
T KOG0547|consen 466 NLFAEILT 473 (606)
T ss_pred HHHHHHHh
Confidence 77766543
No 73
>PLN02789 farnesyltranstransferase
Probab=99.05 E-value=5.5e-09 Score=105.47 Aligned_cols=137 Identities=12% Similarity=0.062 Sum_probs=124.1
Q ss_pred HHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHH
Q 008887 378 KFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKG-LLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSG 456 (550)
Q Consensus 378 ~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g-~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg 456 (550)
.+...++.++|+..+.++++.+|++..+|..+|.++...| +++++++.++++++. +|.+. . +|++.+
T Consensus 46 ~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~-----npkny-q------aW~~R~ 113 (320)
T PLN02789 46 VYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAED-----NPKNY-Q------IWHHRR 113 (320)
T ss_pred HHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHH-----CCcch-H------HhHHHH
Confidence 4566778999999999999999999999999999999998 689999999999999 88776 3 888999
Q ss_pred HHHHHhcCH--HHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHHHHHHHhh
Q 008887 457 VACIRQEKW--EEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQLENN 534 (550)
Q Consensus 457 ~~~~~~g~~--~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~l~~~ 534 (550)
.++.+.|+. ++++++++++++.+ |++- .+|...+.++...|++++|++++.++++.+|.+..++....-+
T Consensus 114 ~~l~~l~~~~~~~el~~~~kal~~d-pkNy-------~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~v 185 (320)
T PLN02789 114 WLAEKLGPDAANKELEFTRKILSLD-AKNY-------HAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFV 185 (320)
T ss_pred HHHHHcCchhhHHHHHHHHHHHHhC-cccH-------HHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHH
Confidence 999888874 78899999999998 8777 9999999999999999999999999999999999988776553
No 74
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=99.05 E-value=6.7e-09 Score=88.90 Aligned_cols=113 Identities=20% Similarity=0.236 Sum_probs=87.8
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCC
Q 008887 403 INALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPE 482 (550)
Q Consensus 403 ~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~ 482 (550)
+..++.+|..+...|++++|++.|+++++. +|.++... .+++.+|.++...|++++|+++|++++... |+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-p~ 71 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKK-----YPKSTYAP----NAHYWLGEAYYAQGKYADAAKAFLAVVKKY-PK 71 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-----CCCccccH----HHHHHHHHHHHhhccHHHHHHHHHHHHHHC-CC
Confidence 456788888888888888888888888887 66554211 256678888888899999999998888876 65
Q ss_pred CccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHHHH
Q 008887 483 EPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLE 529 (550)
Q Consensus 483 ~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~ 529 (550)
.. ....+++.+|.++.+.|++++|...++++++..|++.....
T Consensus 72 ~~----~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 114 (119)
T TIGR02795 72 SP----KAPDALLKLGMSLQELGDKEKAKATLQQVIKRYPGSSAAKL 114 (119)
T ss_pred CC----cccHHHHHHHHHHHHhCChHHHHHHHHHHHHHCcCChhHHH
Confidence 43 22367888888888899999999999998888888776544
No 75
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.04 E-value=2.5e-09 Score=103.77 Aligned_cols=101 Identities=19% Similarity=0.304 Sum_probs=70.3
Q ss_pred HHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHH
Q 008887 370 KELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLI 449 (550)
Q Consensus 370 ~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~ 449 (550)
+..+++|..++..|++.+|+..|..|++.+|++..+++..|.+|+..|+-..|+..+.+++++ -|+.. .
T Consensus 39 ekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel-----KpDF~------~ 107 (504)
T KOG0624|consen 39 EKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL-----KPDFM------A 107 (504)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc-----CccHH------H
Confidence 345577777777777777777777777777777777777777777777777777777777777 33322 2
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCC
Q 008887 450 VASQWSGVACIRQEKWEEGIAHLERIGNLKEPEE 483 (550)
Q Consensus 450 ~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~ 483 (550)
+....|.++.++|++++|...|+.+++.+ |++
T Consensus 108 -ARiQRg~vllK~Gele~A~~DF~~vl~~~-~s~ 139 (504)
T KOG0624|consen 108 -ARIQRGVVLLKQGELEQAEADFDQVLQHE-PSN 139 (504)
T ss_pred -HHHHhchhhhhcccHHHHHHHHHHHHhcC-CCc
Confidence 55667777777777777777777777765 543
No 76
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.04 E-value=6.8e-09 Score=114.69 Aligned_cols=139 Identities=13% Similarity=0.122 Sum_probs=119.3
Q ss_pred HHHHcCCCCChH---HHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHH
Q 008887 378 KFLSKGDKERPI---PLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQW 454 (550)
Q Consensus 378 ~~~~~g~~~~A~---~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~ 454 (550)
..-..+....+. ..+....+.+|++++++.+||.+..+.|++++|+..++.++++ .|++. . ++.+
T Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~-----~Pd~~-~------a~~~ 125 (694)
T PRK15179 58 VLERHAAVHKPAAALPELLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQR-----FPDSS-E------AFIL 125 (694)
T ss_pred HHHHhhhhcchHhhHHHHHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh-----CCCcH-H------HHHH
Confidence 344445444444 4444445578999999999999999999999999999999999 88876 3 8889
Q ss_pred HHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHHHHHHHhh
Q 008887 455 SGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQLENN 534 (550)
Q Consensus 455 lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~l~~~ 534 (550)
++.++.+++++++|+..++++++.+ |++. .+++.+|.++.++|++++|.++|+++++-+|++.+++-.+...
T Consensus 126 ~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~-------~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~ 197 (694)
T PRK15179 126 MLRGVKRQQGIEAGRAEIELYFSGG-SSSA-------REILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQS 197 (694)
T ss_pred HHHHHHHhccHHHHHHHHHHHhhcC-CCCH-------HHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 9999999999999999999999998 9888 9999999999999999999999999999999988887766654
Q ss_pred HH
Q 008887 535 DE 536 (550)
Q Consensus 535 ~~ 536 (550)
+.
T Consensus 198 l~ 199 (694)
T PRK15179 198 LT 199 (694)
T ss_pred HH
Confidence 43
No 77
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.03 E-value=3e-09 Score=109.18 Aligned_cols=143 Identities=19% Similarity=0.234 Sum_probs=124.1
Q ss_pred HHHHHHHHHHHcCCCCChHHHHHHHHhhC--------------------------CCChHHHHHHHHHHHHcCCHHHHHH
Q 008887 371 ELIALSVKFLSKGDKERPIPLLQLALNKE--------------------------PDNINALILMGQTQLQKGLLEEAVE 424 (550)
Q Consensus 371 ~l~~la~~~~~~g~~~~A~~~~~~aL~~~--------------------------p~~~~a~~~lg~~~~~~g~~~eA~~ 424 (550)
.+..+|..+...++++.|+.+|++++... |+-..--...|+.+++.|+|.+|+.
T Consensus 300 ~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~ 379 (539)
T KOG0548|consen 300 ALARLGNAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVK 379 (539)
T ss_pred HHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHH
Confidence 33456778888888888999888888743 3334444567999999999999999
Q ss_pred HHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhc
Q 008887 425 YLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNV 504 (550)
Q Consensus 425 ~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~ 504 (550)
+|.+++.. +|+++ .+|-|.|.||.+.|++.+|++.++++++++ |+.. .+|...|.++..+
T Consensus 380 ~YteAIkr-----~P~Da-------~lYsNRAac~~kL~~~~~aL~Da~~~ieL~-p~~~-------kgy~RKg~al~~m 439 (539)
T KOG0548|consen 380 HYTEAIKR-----DPEDA-------RLYSNRAACYLKLGEYPEALKDAKKCIELD-PNFI-------KAYLRKGAALRAM 439 (539)
T ss_pred HHHHHHhc-----CCchh-------HHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-chHH-------HHHHHHHHHHHHH
Confidence 99999999 88887 378899999999999999999999999998 8777 9999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCCcHHHHHHHHh
Q 008887 505 GRNAEAEKYLRLAAAHNPQYNELLEQLEN 533 (550)
Q Consensus 505 g~~~eA~~~l~~al~~~p~~~~~~~~l~~ 533 (550)
.+|++|.+.|+++++.+|++.++...+.+
T Consensus 440 k~ydkAleay~eale~dp~~~e~~~~~~r 468 (539)
T KOG0548|consen 440 KEYDKALEAYQEALELDPSNAEAIDGYRR 468 (539)
T ss_pred HHHHHHHHHHHHHHhcCchhHHHHHHHHH
Confidence 99999999999999999999997776655
No 78
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.03 E-value=1.9e-09 Score=104.61 Aligned_cols=163 Identities=18% Similarity=0.196 Sum_probs=135.0
Q ss_pred ChHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHH------------HHHHHHHcCCHHHHHHHHHHHHHHhhh
Q 008887 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALIL------------MGQTQLQKGLLEEAVEYLECAISKLFL 435 (550)
Q Consensus 368 ~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~------------lg~~~~~~g~~~eA~~~~~~al~l~~~ 435 (550)
+.+.+++++..++..|+.+.++...+++|+++|++-.++-. -+......++|.++++..++.++.
T Consensus 222 nTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~--- 298 (504)
T KOG0624|consen 222 NTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKN--- 298 (504)
T ss_pred chHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhc---
Confidence 66788899999999999999999999999999998766522 245556789999999999999998
Q ss_pred cCCCCChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHH
Q 008887 436 AGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLR 515 (550)
Q Consensus 436 ~~~p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~ 515 (550)
+|..+... ......++.|+..-|++.+|++.|.++++.+ |++. .++...|.+|....+||+|+..|+
T Consensus 299 --ep~~~~ir---~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d-~~dv-------~~l~dRAeA~l~dE~YD~AI~dye 365 (504)
T KOG0624|consen 299 --EPEETMIR---YNGFRVLCTCYREDEQFGEAIQQCKEVLDID-PDDV-------QVLCDRAEAYLGDEMYDDAIHDYE 365 (504)
T ss_pred --CCccccee---eeeeheeeecccccCCHHHHHHHHHHHHhcC-chHH-------HHHHHHHHHHhhhHHHHHHHHHHH
Confidence 77744221 0133357899999999999999999999998 9888 999999999999999999999999
Q ss_pred HHHHcCCCcHHHHHHHHhhHHHHHhhhhhccccCC
Q 008887 516 LAAAHNPQYNELLEQLENNDEEFVSDLSSSRRRDY 550 (550)
Q Consensus 516 ~al~~~p~~~~~~~~l~~~~~~~~~~l~~~~r~~~ 550 (550)
++++.++++..++..++++ .+. ...+.+|||
T Consensus 366 ~A~e~n~sn~~~reGle~A-krl---kkqs~kRDY 396 (504)
T KOG0624|consen 366 KALELNESNTRAREGLERA-KRL---KKQSGKRDY 396 (504)
T ss_pred HHHhcCcccHHHHHHHHHH-HHH---HHHhccchH
Confidence 9999999999999998883 222 234445554
No 79
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=99.03 E-value=8.8e-09 Score=92.22 Aligned_cols=131 Identities=18% Similarity=0.179 Sum_probs=107.8
Q ss_pred HHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHH
Q 008887 370 KELIALSVKFLSKGDKERPIPLLQLALNKEPDN---INALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAID 446 (550)
Q Consensus 370 ~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~---~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~ 446 (550)
...+..+......++.+.+...+++..+.+|+. ..+.+.+|.++...|++++|.+.|++++.. .++...
T Consensus 12 ~~~y~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-----~~d~~l--- 83 (145)
T PF09976_consen 12 SALYEQALQALQAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-----APDPEL--- 83 (145)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-----CCCHHH---
Confidence 355666667778999999999999999999998 577888999999999999999999999988 433321
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008887 447 LLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAA 518 (550)
Q Consensus 447 ~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al 518 (550)
...+...++.++..+|++++|+..++.. ... +- ...++..+|.+|...|++++|+..|++++
T Consensus 84 -~~~a~l~LA~~~~~~~~~d~Al~~L~~~-~~~-~~-------~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 84 -KPLARLRLARILLQQGQYDEALATLQQI-PDE-AF-------KALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred -HHHHHHHHHHHHHHcCCHHHHHHHHHhc-cCc-ch-------HHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 1237778999999999999999999773 221 22 23788899999999999999999999874
No 80
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.02 E-value=6.4e-09 Score=112.34 Aligned_cols=134 Identities=16% Similarity=0.163 Sum_probs=125.6
Q ss_pred hHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHH
Q 008887 369 PKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLL 448 (550)
Q Consensus 369 ~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l 448 (550)
.+.+...|...+..|++++|.+.+.++++.+|.++.+|+.||.+|.++||.++|....-.|..+ +|.+. .
T Consensus 139 l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL-----~p~d~-e---- 208 (895)
T KOG2076|consen 139 LRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHL-----NPKDY-E---- 208 (895)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhc-----CCCCh-H----
Confidence 3566788999999999999999999999999999999999999999999999999999999888 88887 3
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 008887 449 IVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNP 522 (550)
Q Consensus 449 ~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p 522 (550)
.|..++....++|++++|+-+|.+|++.+ |.+. ...+..+.+|.++|++.+|...|.++++.+|
T Consensus 209 --~W~~ladls~~~~~i~qA~~cy~rAI~~~-p~n~-------~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p 272 (895)
T KOG2076|consen 209 --LWKRLADLSEQLGNINQARYCYSRAIQAN-PSNW-------ELIYERSSLYQKTGDLKRAMETFLQLLQLDP 272 (895)
T ss_pred --HHHHHHHHHHhcccHHHHHHHHHHHHhcC-Ccch-------HHHHHHHHHHHHhChHHHHHHHHHHHHhhCC
Confidence 67789999999999999999999999998 8877 8999999999999999999999999999998
No 81
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.98 E-value=6.7e-09 Score=88.91 Aligned_cols=106 Identities=22% Similarity=0.245 Sum_probs=94.3
Q ss_pred hHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhH
Q 008887 369 PKELIALSVKFLSKGDKERPIPLLQLALNKEPDN---INALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAI 445 (550)
Q Consensus 369 ~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~---~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~ 445 (550)
++.++..|..+...|++++|++.|+++++.+|++ ..+++.+|.++...|++++|+++|++++.. +|+++...
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~p~~~~~~ 76 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKK-----YPKSPKAP 76 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHH-----CCCCCccc
Confidence 4678899999999999999999999999999876 578999999999999999999999999998 77754222
Q ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCc
Q 008887 446 DLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEP 484 (550)
Q Consensus 446 ~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~ 484 (550)
.+++.+|.++.+.|++++|+++++++++.. |++.
T Consensus 77 ----~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-p~~~ 110 (119)
T TIGR02795 77 ----DALLKLGMSLQELGDKEKAKATLQQVIKRY-PGSS 110 (119)
T ss_pred ----HHHHHHHHHHHHhCChHHHHHHHHHHHHHC-cCCh
Confidence 267789999999999999999999999997 8765
No 82
>PLN02789 farnesyltranstransferase
Probab=98.97 E-value=9.7e-09 Score=103.72 Aligned_cols=150 Identities=11% Similarity=0.014 Sum_probs=128.9
Q ss_pred ChHHHHHHHHHHHHcC-CCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCH--HHHHHHHHHHHHHhhhcCCCCChhh
Q 008887 368 TPKELIALSVKFLSKG-DKERPIPLLQLALNKEPDNINALILMGQTQLQKGLL--EEAVEYLECAISKLFLAGHPTEPEA 444 (550)
Q Consensus 368 ~~~~l~~la~~~~~~g-~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~--~eA~~~~~~al~l~~~~~~p~~~~~ 444 (550)
+.......+..+...| ++++++..++++++.+|++..+|+.++.++.+.|+. ++++++++++++. +|.+- +
T Consensus 70 ~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~-----dpkNy-~ 143 (320)
T PLN02789 70 NYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSL-----DAKNY-H 143 (320)
T ss_pred hHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHh-----CcccH-H
Confidence 3445557777888887 679999999999999999999999999999999874 7889999999999 88776 3
Q ss_pred HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhc---CCH----HHHHHHHHHH
Q 008887 445 IDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNV---GRN----AEAEKYLRLA 517 (550)
Q Consensus 445 ~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~---g~~----~eA~~~l~~a 517 (550)
+|.+.+.++...|++++|+++++++++.+ +++. .+|...+.++... |++ ++++++..++
T Consensus 144 ------AW~~R~w~l~~l~~~~eeL~~~~~~I~~d-~~N~-------sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~a 209 (320)
T PLN02789 144 ------AWSHRQWVLRTLGGWEDELEYCHQLLEED-VRNN-------SAWNQRYFVITRSPLLGGLEAMRDSELKYTIDA 209 (320)
T ss_pred ------HHHHHHHHHHHhhhHHHHHHHHHHHHHHC-CCch-------hHHHHHHHHHHhccccccccccHHHHHHHHHHH
Confidence 89999999999999999999999999998 8877 8999999988776 333 5788888899
Q ss_pred HHcCCCcHHHHHHHHhhHHH
Q 008887 518 AAHNPQYNELLEQLENNDEE 537 (550)
Q Consensus 518 l~~~p~~~~~~~~l~~~~~~ 537 (550)
+..+|++..+|..+..+...
T Consensus 210 I~~~P~N~SaW~Yl~~ll~~ 229 (320)
T PLN02789 210 ILANPRNESPWRYLRGLFKD 229 (320)
T ss_pred HHhCCCCcCHHHHHHHHHhc
Confidence 99999999998877665444
No 83
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=98.97 E-value=1.2e-08 Score=116.05 Aligned_cols=139 Identities=14% Similarity=0.046 Sum_probs=125.8
Q ss_pred HHHHHHHHHHHcCCCCChHHHHHHHHhhCCC---------------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh
Q 008887 371 ELIALSVKFLSKGDKERPIPLLQLALNKEPD---------------NINALILMGQTQLQKGLLEEAVEYLECAISKLFL 435 (550)
Q Consensus 371 ~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~---------------~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~ 435 (550)
....++..+...|++++|++.++++.+.+|. ...++..+|.++...|++++|++.++++++.
T Consensus 312 ~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~--- 388 (765)
T PRK10049 312 ELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYN--- 388 (765)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---
Confidence 4457777889999999999999999998763 2457789999999999999999999999999
Q ss_pred cCCCCChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHH
Q 008887 436 AGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLR 515 (550)
Q Consensus 436 ~~~p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~ 515 (550)
.|.++ . ++..+|.++...|++++|++.++++++.+ |++. .+++.+|.++.+.|++++|++.++
T Consensus 389 --~P~n~-~------l~~~lA~l~~~~g~~~~A~~~l~~al~l~-Pd~~-------~l~~~~a~~al~~~~~~~A~~~~~ 451 (765)
T PRK10049 389 --APGNQ-G------LRIDYASVLQARGWPRAAENELKKAEVLE-PRNI-------NLEVEQAWTALDLQEWRQMDVLTD 451 (765)
T ss_pred --CCCCH-H------HHHHHHHHHHhcCCHHHHHHHHHHHHhhC-CCCh-------HHHHHHHHHHHHhCCHHHHHHHHH
Confidence 88886 3 77889999999999999999999999998 9888 899999999999999999999999
Q ss_pred HHHHcCCCcHHHHH
Q 008887 516 LAAAHNPQYNELLE 529 (550)
Q Consensus 516 ~al~~~p~~~~~~~ 529 (550)
++++..|++.....
T Consensus 452 ~ll~~~Pd~~~~~~ 465 (765)
T PRK10049 452 DVVAREPQDPGVQR 465 (765)
T ss_pred HHHHhCCCCHHHHH
Confidence 99999999997654
No 84
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.97 E-value=1.4e-08 Score=98.41 Aligned_cols=133 Identities=21% Similarity=0.163 Sum_probs=112.7
Q ss_pred CChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHHh---
Q 008887 386 ERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQ--- 462 (550)
Q Consensus 386 ~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~--- 462 (550)
++-+.-++.-|..+|+|.+-|..||.+|+..|+++.|...|++|+++ .|++++ .+..+|.+++.+
T Consensus 139 ~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL-----~g~n~~-------~~~g~aeaL~~~a~~ 206 (287)
T COG4235 139 EALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRL-----AGDNPE-------ILLGLAEALYYQAGQ 206 (287)
T ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHh-----CCCCHH-------HHHHHHHHHHHhcCC
Confidence 34455677778899999999999999999999999999999999999 888873 333456555443
Q ss_pred cCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHHHHHHHhhHHHH
Q 008887 463 EKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQLENNDEEF 538 (550)
Q Consensus 463 g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~l~~~~~~~ 538 (550)
....++.+.+++++..+ |.+. .+.+.||..+++.|++.+|...++..+...|.+......+++.....
T Consensus 207 ~~ta~a~~ll~~al~~D-~~~i-------ral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~ie~~ia~~ 274 (287)
T COG4235 207 QMTAKARALLRQALALD-PANI-------RALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRSLIERSIARA 274 (287)
T ss_pred cccHHHHHHHHHHHhcC-CccH-------HHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHH
Confidence 45678999999999998 9888 99999999999999999999999999999999888887777644443
No 85
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.96 E-value=9.2e-09 Score=102.97 Aligned_cols=118 Identities=17% Similarity=0.176 Sum_probs=91.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHH----HHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCC
Q 008887 407 ILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDL----LIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPE 482 (550)
Q Consensus 407 ~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~----l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~ 482 (550)
...|+.|++.|+|..|...|++|+...... .+.+++..+. ...++.|++.|+.++++|.+|++.+.++++.+ |+
T Consensus 212 ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~-~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~ 289 (397)
T KOG0543|consen 212 KERGNVLFKEGKFKLAKKRYERAVSFLEYR-RSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD-PN 289 (397)
T ss_pred HHhhhHHHhhchHHHHHHHHHHHHHHhhcc-ccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CC
Confidence 345666666666666666666666553111 1112211111 11278899999999999999999999999998 88
Q ss_pred CccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHHHHHHHh
Q 008887 483 EPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQLEN 533 (550)
Q Consensus 483 ~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~l~~ 533 (550)
+. .+++..|+++..+|+++.|+..|+++++++|++..+..++..
T Consensus 290 N~-------KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~ 333 (397)
T KOG0543|consen 290 NV-------KALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIK 333 (397)
T ss_pred ch-------hHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 88 999999999999999999999999999999999998887766
No 86
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.94 E-value=4.9e-08 Score=92.57 Aligned_cols=155 Identities=20% Similarity=0.249 Sum_probs=121.6
Q ss_pred CChHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChh
Q 008887 367 LTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDN---INALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPE 443 (550)
Q Consensus 367 l~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~---~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~ 443 (550)
.++++++..|..++..|++++|++.|+++....|.. ..+.+.+|.+++..|++++|+..+++.++. .|+++.
T Consensus 3 ~~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~-----yP~~~~ 77 (203)
T PF13525_consen 3 DTAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL-----YPNSPK 77 (203)
T ss_dssp --HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH------TT-TT
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-----CCCCcc
Confidence 478899999999999999999999999999988865 578999999999999999999999999999 888874
Q ss_pred hHHHHHHHHHHHHHHHHHh-----------cCHHHHHHHHHHHhcCCCCCCccccc----------cchhHHHHHHHHHH
Q 008887 444 AIDLLIVASQWSGVACIRQ-----------EKWEEGIAHLERIGNLKEPEEPKSKA----------HYYDGLVVLASALC 502 (550)
Q Consensus 444 ~~~~l~~a~~~lg~~~~~~-----------g~~~eA~~~~~~al~~~~p~~~~~~~----------~~~~~~~~La~~~~ 502 (550)
.. .+++.+|.+++.+ +...+|+..|++.++.. |+...... ....--+..|..|.
T Consensus 78 ~~----~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~y-P~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~ 152 (203)
T PF13525_consen 78 AD----YALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRY-PNSEYAEEAKKRLAELRNRLAEHELYIARFYY 152 (203)
T ss_dssp HH----HHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH--TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hh----hHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHC-cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 43 4677788886654 34458999999999998 87763221 13444567789999
Q ss_pred hcCCHHHHHHHHHHHHHcCCCcHHHHHHH
Q 008887 503 NVGRNAEAEKYLRLAAAHNPQYNELLEQL 531 (550)
Q Consensus 503 ~~g~~~eA~~~l~~al~~~p~~~~~~~~l 531 (550)
+.|++..|+..++.+++..|+.......+
T Consensus 153 ~~~~y~aA~~r~~~v~~~yp~t~~~~~al 181 (203)
T PF13525_consen 153 KRGKYKAAIIRFQYVIENYPDTPAAEEAL 181 (203)
T ss_dssp CTT-HHHHHHHHHHHHHHSTTSHHHHHHH
T ss_pred HcccHHHHHHHHHHHHHHCCCCchHHHHH
Confidence 99999999999999999999987654433
No 87
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.93 E-value=1.9e-08 Score=107.95 Aligned_cols=147 Identities=20% Similarity=0.150 Sum_probs=115.4
Q ss_pred CChHHHHHHHHHHHHcCC---CCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCC--------HHHHHHHHHHHHHHhhh
Q 008887 367 LTPKELIALSVKFLSKGD---KERPIPLLQLALNKEPDNINALILMGQTQLQKGL--------LEEAVEYLECAISKLFL 435 (550)
Q Consensus 367 l~~~~l~~la~~~~~~g~---~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~--------~~eA~~~~~~al~l~~~ 435 (550)
.++-+++-.|..++..++ +++|+++|++|++.+|+++.++..++.+|..... ..++.+..++++.+
T Consensus 337 ~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al--- 413 (517)
T PRK10153 337 GAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVAL--- 413 (517)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhc---
Confidence 455667788888877765 6689999999999999999999999888866532 33445555554443
Q ss_pred cCCCCChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHH
Q 008887 436 AGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLR 515 (550)
Q Consensus 436 ~~~p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~ 515 (550)
..++.++ .++..+|..+...|++++|...++++++++ | +. .+|..+|.++...|++++|.+.|+
T Consensus 414 ~~~~~~~-------~~~~ala~~~~~~g~~~~A~~~l~rAl~L~-p-s~-------~a~~~lG~~~~~~G~~~eA~~~~~ 477 (517)
T PRK10153 414 PELNVLP-------RIYEILAVQALVKGKTDEAYQAINKAIDLE-M-SW-------LNYVLLGKVYELKGDNRLAADAYS 477 (517)
T ss_pred ccCcCCh-------HHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-C-CH-------HHHHHHHHHHHHcCCHHHHHHHHH
Confidence 1133333 256668888888999999999999999997 6 35 899999999999999999999999
Q ss_pred HHHHcCCCcHHHHHHHHh
Q 008887 516 LAAAHNPQYNELLEQLEN 533 (550)
Q Consensus 516 ~al~~~p~~~~~~~~l~~ 533 (550)
++++++|.++. +..|++
T Consensus 478 ~A~~L~P~~pt-~~~~~~ 494 (517)
T PRK10153 478 TAFNLRPGENT-LYWIEN 494 (517)
T ss_pred HHHhcCCCCch-HHHHHh
Confidence 99999999885 444444
No 88
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.92 E-value=2.1e-08 Score=92.16 Aligned_cols=138 Identities=12% Similarity=-0.002 Sum_probs=100.9
Q ss_pred HHHcCCCCChHHHHHHHHhhCCCC--hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHH
Q 008887 379 FLSKGDKERPIPLLQLALNKEPDN--INALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSG 456 (550)
Q Consensus 379 ~~~~g~~~~A~~~~~~aL~~~p~~--~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg 456 (550)
++-.+++..+...+.+.++.+..+ ..+++.+|.++...|++++|+..|++++.+ .+..... ..+++++|
T Consensus 9 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l-----~~~~~~~----~~~~~~lg 79 (168)
T CHL00033 9 NFIDKTFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRL-----EIDPYDR----SYILYNIG 79 (168)
T ss_pred cccccccccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----cccchhh----HHHHHHHH
Confidence 445556777777787776666555 667799999999999999999999999988 4443211 13788999
Q ss_pred HHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHH-------HHHHHHHHHHHcCCCcHH
Q 008887 457 VACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNA-------EAEKYLRLAAAHNPQYNE 526 (550)
Q Consensus 457 ~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~-------eA~~~l~~al~~~p~~~~ 526 (550)
.++...|++++|++.++++++.. |.....+.....++..+|+.+.+.|+++ +|...+++++..+|++..
T Consensus 80 ~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~~ 155 (168)
T CHL00033 80 LIHTSNGEHTKALEYYFQALERN-PFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNYI 155 (168)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccHH
Confidence 99999999999999999999997 8776333333333344444444888877 556666667777776554
No 89
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.92 E-value=7e-08 Score=93.92 Aligned_cols=155 Identities=14% Similarity=0.108 Sum_probs=126.2
Q ss_pred CChHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHH---HHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChh
Q 008887 367 LTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINAL---ILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPE 443 (550)
Q Consensus 367 l~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~---~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~ 443 (550)
.+++..+..|..++..|++++|++.|++++..+|+...+. +.+|.+|++.+++++|+..+++.++. +|+++.
T Consensus 30 ~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~-----~P~~~~ 104 (243)
T PRK10866 30 NPPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL-----NPTHPN 104 (243)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-----CcCCCc
Confidence 4777889999999999999999999999999999886554 89999999999999999999999999 998885
Q ss_pred hHHHHHHHHHHHHHHHHHhc------------------CHHHHHHHHHHHhcCCCCCCccccc----------cchhHHH
Q 008887 444 AIDLLIVASQWSGVACIRQE------------------KWEEGIAHLERIGNLKEPEEPKSKA----------HYYDGLV 495 (550)
Q Consensus 444 ~~~~l~~a~~~lg~~~~~~g------------------~~~eA~~~~~~al~~~~p~~~~~~~----------~~~~~~~ 495 (550)
.. .+++.+|.++...+ ...+|++.|++.++.. |+..-... ..+.--+
T Consensus 105 ~~----~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~y-P~S~ya~~A~~rl~~l~~~la~~e~ 179 (243)
T PRK10866 105 ID----YVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGY-PNSQYTTDATKRLVFLKDRLAKYEL 179 (243)
T ss_pred hH----HHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHC-cCChhHHHHHHHHHHHHHHHHHHHH
Confidence 54 46677888865443 1357889999999998 87642221 1334445
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHHHHHH
Q 008887 496 VLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQL 531 (550)
Q Consensus 496 ~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~l 531 (550)
..|+.|.+.|++.-|+.-++.+++..|+.+...+-+
T Consensus 180 ~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal 215 (243)
T PRK10866 180 SVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDAL 215 (243)
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHH
Confidence 678889999999999999999999988876644433
No 90
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.91 E-value=2.2e-08 Score=80.35 Aligned_cols=98 Identities=27% Similarity=0.345 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCc
Q 008887 405 ALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEP 484 (550)
Q Consensus 405 a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~ 484 (550)
+++.+|.++...|++++|+..++++++. .|.++ .+++.+|.++...|++++|+++++++++.. +.+.
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~-----~~~~~-------~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~ 68 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALEL-----DPDNA-------DAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNA 68 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhc-----CCccH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-Ccch
Confidence 4566777777777777777777777666 44443 255567777777777777777777777765 5555
Q ss_pred cccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 008887 485 KSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNP 522 (550)
Q Consensus 485 ~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p 522 (550)
..+..+|.++...|++++|...++++++.+|
T Consensus 69 -------~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 69 -------KAYYNLGLAYYKLGKYEEALEAYEKALELDP 99 (100)
T ss_pred -------hHHHHHHHHHHHHHhHHHHHHHHHHHHccCC
Confidence 6667777777777777777777777766655
No 91
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.89 E-value=2e-08 Score=92.64 Aligned_cols=109 Identities=17% Similarity=0.182 Sum_probs=85.9
Q ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCC
Q 008887 400 PDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLK 479 (550)
Q Consensus 400 p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~ 479 (550)
+....+++.+|..+...|++++|+.+|+++++. .|..++. ..+++++|.++...|++++|++.++++++..
T Consensus 32 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~-----~~~~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 102 (172)
T PRK02603 32 AKEAFVYYRDGMSAQADGEYAEALENYEEALKL-----EEDPNDR----SYILYNMGIIYASNGEHDKALEYYHQALELN 102 (172)
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-----hhccchH----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 456677888888888889999999999888887 4443311 1267788899999999999999999988887
Q ss_pred CCCCccccccchhHHHHHHHHHHhcCC--------------HHHHHHHHHHHHHcCCCcH
Q 008887 480 EPEEPKSKAHYYDGLVVLASALCNVGR--------------NAEAEKYLRLAAAHNPQYN 525 (550)
Q Consensus 480 ~p~~~~~~~~~~~~~~~La~~~~~~g~--------------~~eA~~~l~~al~~~p~~~ 525 (550)
|.+. ..+..+|.+|...|+ +++|.+.++++++.+|++.
T Consensus 103 -p~~~-------~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~~ 154 (172)
T PRK02603 103 -PKQP-------SALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNNY 154 (172)
T ss_pred -cccH-------HHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchhH
Confidence 7666 778888888888777 6788888888888888874
No 92
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=98.89 E-value=3.8e-08 Score=107.17 Aligned_cols=150 Identities=19% Similarity=0.107 Sum_probs=108.8
Q ss_pred ChHHHHHHHHHHHHc---CCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhh
Q 008887 368 TPKELIALSVKFLSK---GDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEA 444 (550)
Q Consensus 368 ~~~~l~~la~~~~~~---g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~ 444 (550)
..+++..+|..-+.. ..+..+..++.++...++++|.++..++.-++..|+|+.+....+.++... ..
T Consensus 232 ~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t---------~~ 302 (1018)
T KOG2002|consen 232 CVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNT---------EN 302 (1018)
T ss_pred hHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhh---------hh
Confidence 344455555544333 345568888888888888888888888888888888888888888877761 12
Q ss_pred HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCc
Q 008887 445 IDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQY 524 (550)
Q Consensus 445 ~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~ 524 (550)
.....+.+|++|++|..+|++++|..+|.++++.+ +++ ..-.++.+|+.|...|++++|..+|++++..+|++
T Consensus 303 ~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~-~d~------~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~ 375 (1018)
T KOG2002|consen 303 KSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKAD-NDN------FVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNN 375 (1018)
T ss_pred hHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccC-CCC------ccccccchhHHHHHhchHHHHHHHHHHHHHhCcch
Confidence 23333477788888888888888888888888876 443 12677788888888888888888888888888888
Q ss_pred HHHHHHHHh
Q 008887 525 NELLEQLEN 533 (550)
Q Consensus 525 ~~~~~~l~~ 533 (550)
.+....+.-
T Consensus 376 ~etm~iLG~ 384 (1018)
T KOG2002|consen 376 YETMKILGC 384 (1018)
T ss_pred HHHHHHHHh
Confidence 877666554
No 93
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.88 E-value=3.7e-08 Score=110.91 Aligned_cols=139 Identities=12% Similarity=0.053 Sum_probs=75.8
Q ss_pred HHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHH
Q 008887 374 ALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQ 453 (550)
Q Consensus 374 ~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~ 453 (550)
.++..+...|+.++|+.++++++..++........+|.+|...|++++|++.|+++++. +|+++ . ++.
T Consensus 73 dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~-----dP~n~-~------~l~ 140 (822)
T PRK14574 73 DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQALALWQSSLKK-----DPTNP-D------LIS 140 (822)
T ss_pred HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CCCCH-H------HHH
Confidence 44555555566666666666665323333333334455666666666666666666666 55554 2 333
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHHHHHHHh
Q 008887 454 WSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQLEN 533 (550)
Q Consensus 454 ~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~l~~ 533 (550)
.++..+.+.++.++|++.++++...+ |+.. .+..++.++...++..+|++.++++++.+|++.++...+-.
T Consensus 141 gLa~~y~~~~q~~eAl~~l~~l~~~d-p~~~--------~~l~layL~~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~ 211 (822)
T PRK14574 141 GMIMTQADAGRGGVVLKQATELAERD-PTVQ--------NYMTLSYLNRATDRNYDALQASSEAVRLAPTSEEVLKNHLE 211 (822)
T ss_pred HHHHHHhhcCCHHHHHHHHHHhcccC-cchH--------HHHHHHHHHHhcchHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 45566666666666666666665554 4322 12333444444555555666666666666666665544443
No 94
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.88 E-value=2.7e-08 Score=102.68 Aligned_cols=156 Identities=15% Similarity=0.219 Sum_probs=130.7
Q ss_pred cCCCChHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChh
Q 008887 364 VENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPE 443 (550)
Q Consensus 364 ~~~l~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~ 443 (550)
+++....++...|..+...|+.|+|...|..|-+.-|+...-...+|.-|.+.+.++-|.++|.+|+.+ .|.+|
T Consensus 341 lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai-----~P~Dp- 414 (611)
T KOG1173|consen 341 LDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAI-----APSDP- 414 (611)
T ss_pred cCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhc-----CCCcc-
Confidence 333456678889999999999999999999999999998888888999999999999999999999999 88888
Q ss_pred hHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 008887 444 AIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQ 523 (550)
Q Consensus 444 ~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~ 523 (550)
...+.+|.+.+..+.|.+|..+|+++++.. ++...........+.+||.+|.+++++++|+.++++++.+.|.
T Consensus 415 ------lv~~Elgvvay~~~~y~~A~~~f~~~l~~i-k~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k 487 (611)
T KOG1173|consen 415 ------LVLHELGVVAYTYEEYPEALKYFQKALEVI-KSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPK 487 (611)
T ss_pred ------hhhhhhhheeehHhhhHHHHHHHHHHHHHh-hhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCC
Confidence 366789999999999999999999999543 2222222234457899999999999999999999999999999
Q ss_pred cHHHHHHHH
Q 008887 524 YNELLEQLE 532 (550)
Q Consensus 524 ~~~~~~~l~ 532 (550)
+...+..+.
T Consensus 488 ~~~~~asig 496 (611)
T KOG1173|consen 488 DASTHASIG 496 (611)
T ss_pred chhHHHHHH
Confidence 988665443
No 95
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.87 E-value=2.1e-07 Score=98.24 Aligned_cols=135 Identities=13% Similarity=0.094 Sum_probs=117.4
Q ss_pred HHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHH
Q 008887 372 LIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVA 451 (550)
Q Consensus 372 l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a 451 (550)
....|...+..|+++.|.+.+.++.+..|+....+...|.++.+.|++++|.++++++.+. .|.+... .
T Consensus 87 ~~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~-----~p~~~l~------~ 155 (409)
T TIGR00540 87 QTEEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAEL-----AGNDNIL------V 155 (409)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCcCchH------H
Confidence 3478889999999999999999999999988888889999999999999999999999888 5555411 2
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcH
Q 008887 452 SQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYN 525 (550)
Q Consensus 452 ~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~ 525 (550)
....+..+...|++++|.+.+++..+.. |+++ .++..++.+|.+.|++++|.+.+.+..+......
T Consensus 156 ~~~~a~l~l~~~~~~~Al~~l~~l~~~~-P~~~-------~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~ 221 (409)
T TIGR00540 156 EIARTRILLAQNELHAARHGVDKLLEMA-PRHK-------EVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDD 221 (409)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCH-------HHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCH
Confidence 2335889999999999999999999998 9888 9999999999999999999999999998754433
No 96
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.85 E-value=1.7e-08 Score=101.18 Aligned_cols=152 Identities=20% Similarity=0.164 Sum_probs=127.2
Q ss_pred ccCccCCCChHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCC
Q 008887 360 LKISVENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHP 439 (550)
Q Consensus 360 ~~~~~~~l~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p 439 (550)
.++.++-.++.++.+.|...+..|++++|.+.|+++|..+..+.++++++|..+..+|+.++|+++|-+...+.
T Consensus 481 ~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il------ 554 (840)
T KOG2003|consen 481 IALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAIL------ 554 (840)
T ss_pred HHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHH------
Confidence 35556656788888999999999999999999999999999999999999999999999999999998877663
Q ss_pred CChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008887 440 TEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAA 519 (550)
Q Consensus 440 ~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~ 519 (550)
.+.. +..+.++.+|....+..+|++++-++..+. |+++ ..+..||.+|.+.|+..+|.+++-...+
T Consensus 555 --~nn~----evl~qianiye~led~aqaie~~~q~~sli-p~dp-------~ilskl~dlydqegdksqafq~~ydsyr 620 (840)
T KOG2003|consen 555 --LNNA----EVLVQIANIYELLEDPAQAIELLMQANSLI-PNDP-------AILSKLADLYDQEGDKSQAFQCHYDSYR 620 (840)
T ss_pred --HhhH----HHHHHHHHHHHHhhCHHHHHHHHHHhcccC-CCCH-------HHHHHHHHHhhcccchhhhhhhhhhccc
Confidence 1122 255679999999999999999999999998 9998 8888888888888888888877777777
Q ss_pred cCCCcHHHHHHH
Q 008887 520 HNPQYNELLEQL 531 (550)
Q Consensus 520 ~~p~~~~~~~~l 531 (550)
.-|-+.+..+-|
T Consensus 621 yfp~nie~iewl 632 (840)
T KOG2003|consen 621 YFPCNIETIEWL 632 (840)
T ss_pred ccCcchHHHHHH
Confidence 767666644433
No 97
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.85 E-value=4.6e-08 Score=95.91 Aligned_cols=107 Identities=21% Similarity=0.236 Sum_probs=95.1
Q ss_pred ChHHHHHHHHHH-HHcCCCCChHHHHHHHHhhCCCC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChh
Q 008887 368 TPKELIALSVKF-LSKGDKERPIPLLQLALNKEPDN---INALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPE 443 (550)
Q Consensus 368 ~~~~l~~la~~~-~~~g~~~~A~~~~~~aL~~~p~~---~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~ 443 (550)
+.+..++.|..+ +..|+|++|+..|++.++.+|++ +.+++++|.+|+..|++++|+..|++++.. +|.++.
T Consensus 141 ~e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~-----yP~s~~ 215 (263)
T PRK10803 141 DANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKN-----YPKSPK 215 (263)
T ss_pred CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-----CCCCcc
Confidence 566778888876 66799999999999999999998 589999999999999999999999999999 787765
Q ss_pred hHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCc
Q 008887 444 AIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEP 484 (550)
Q Consensus 444 ~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~ 484 (550)
.. .+++.+|.++...|++++|++.|+++++.. |+..
T Consensus 216 ~~----dAl~klg~~~~~~g~~~~A~~~~~~vi~~y-P~s~ 251 (263)
T PRK10803 216 AA----DAMFKVGVIMQDKGDTAKAKAVYQQVIKKY-PGTD 251 (263)
T ss_pred hh----HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCCH
Confidence 44 366679999999999999999999999997 8665
No 98
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.84 E-value=9.7e-08 Score=93.66 Aligned_cols=114 Identities=14% Similarity=0.161 Sum_probs=97.4
Q ss_pred ChHHHHHHHHHH-HHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCC
Q 008887 402 NINALILMGQTQ-LQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKE 480 (550)
Q Consensus 402 ~~~a~~~lg~~~-~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~ 480 (550)
+....+..|..+ ...|+|++|+..|++.++. +|++.... .+++++|.+|+..|++++|+..|+++++..
T Consensus 141 ~e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~-----yP~s~~a~----~A~y~LG~~y~~~g~~~~A~~~f~~vv~~y- 210 (263)
T PRK10803 141 DANTDYNAAIALVQDKSRQDDAIVAFQNFVKK-----YPDSTYQP----NANYWLGQLNYNKGKKDDAAYYFASVVKNY- 210 (263)
T ss_pred CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH-----CcCCcchH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-
Confidence 456677777765 5679999999999999999 88775322 388899999999999999999999999987
Q ss_pred CCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHHHH
Q 008887 481 PEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLE 529 (550)
Q Consensus 481 p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~ 529 (550)
|+++ ...++++.+|.++...|++++|...|+++++..|+...+..
T Consensus 211 P~s~----~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a~~ 255 (263)
T PRK10803 211 PKSP----KAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGAKQ 255 (263)
T ss_pred CCCc----chhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHH
Confidence 7665 55689999999999999999999999999999999876443
No 99
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.83 E-value=3.6e-08 Score=79.12 Aligned_cols=97 Identities=27% Similarity=0.360 Sum_probs=88.8
Q ss_pred HHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHH
Q 008887 371 ELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIV 450 (550)
Q Consensus 371 ~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~ 450 (550)
.++.+|..+...|++++|+..++++++..|.+..++..+|.++...|++++|.+++++++.. .|.+. .
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~-------~ 69 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALEL-----DPDNA-------K 69 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----CCcch-------h
Confidence 35688999999999999999999999999999999999999999999999999999999998 66665 2
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHhcCC
Q 008887 451 ASQWSGVACIRQEKWEEGIAHLERIGNLK 479 (550)
Q Consensus 451 a~~~lg~~~~~~g~~~eA~~~~~~al~~~ 479 (550)
++..+|.++...|++++|.+.++++++..
T Consensus 70 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 98 (100)
T cd00189 70 AYYNLGLAYYKLGKYEEALEAYEKALELD 98 (100)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHccC
Confidence 67789999999999999999999998875
No 100
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.83 E-value=1.6e-07 Score=88.20 Aligned_cols=143 Identities=18% Similarity=0.122 Sum_probs=122.9
Q ss_pred ChHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHH
Q 008887 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDL 447 (550)
Q Consensus 368 ~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~ 447 (550)
+.+...-.|..+-..|++++|+++|+..++.||.|...+...-.+.-.+|+.-+|++.+.+.++. .+.+.
T Consensus 85 S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-----F~~D~----- 154 (289)
T KOG3060|consen 85 SKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-----FMNDQ----- 154 (289)
T ss_pred ChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-----hcCcH-----
Confidence 34444567888999999999999999999999999999998888888999999999999999999 77777
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCc
Q 008887 448 LIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVG---RNAEAEKYLRLAAAHNPQY 524 (550)
Q Consensus 448 l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g---~~~eA~~~l~~al~~~p~~ 524 (550)
++|..++..|...|+|++|.-++++++-.+ |-++ ..+..+|++++-+| +.+-|..+|.++++++|.+
T Consensus 155 --EAW~eLaeiY~~~~~f~kA~fClEE~ll~~-P~n~-------l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~ 224 (289)
T KOG3060|consen 155 --EAWHELAEIYLSEGDFEKAAFCLEELLLIQ-PFNP-------LYFQRLAEVLYTQGGAENLELARKYYERALKLNPKN 224 (289)
T ss_pred --HHHHHHHHHHHhHhHHHHHHHHHHHHHHcC-CCcH-------HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHh
Confidence 489999999999999999999999999998 9887 66667777765544 6788999999999999976
Q ss_pred HHHHHH
Q 008887 525 NELLEQ 530 (550)
Q Consensus 525 ~~~~~~ 530 (550)
...+..
T Consensus 225 ~ral~G 230 (289)
T KOG3060|consen 225 LRALFG 230 (289)
T ss_pred HHHHHH
Confidence 665543
No 101
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.80 E-value=1e-08 Score=78.03 Aligned_cols=64 Identities=34% Similarity=0.595 Sum_probs=59.6
Q ss_pred HHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCCh
Q 008887 374 ALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEP 442 (550)
Q Consensus 374 ~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~ 442 (550)
.+|..++..|++++|++.|+++++.+|+++.+++.+|.++...|++++|+.+|+++++. +|++|
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~-----~P~~p 65 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALEL-----DPDNP 65 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-----STT-H
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-----CcCCC
Confidence 67899999999999999999999999999999999999999999999999999999999 77764
No 102
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=98.79 E-value=7.5e-08 Score=104.92 Aligned_cols=154 Identities=18% Similarity=0.222 Sum_probs=134.6
Q ss_pred CccCCCChHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCC---ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCC
Q 008887 362 ISVENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPD---NINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGH 438 (550)
Q Consensus 362 ~~~~~l~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~---~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~ 438 (550)
..+.+-+|..+..+|..++..|+|+.+..+.+.++...-. -++.+|++|..|..+|+|++|..+|.+++.. +
T Consensus 263 y~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~-----~ 337 (1018)
T KOG2002|consen 263 YKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKA-----D 337 (1018)
T ss_pred HhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc-----C
Confidence 3344458889999999999999999999999999986533 3567999999999999999999999999988 5
Q ss_pred CCChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcC----CHHHHHHHH
Q 008887 439 PTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVG----RNAEAEKYL 514 (550)
Q Consensus 439 p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g----~~~eA~~~l 514 (550)
+++- . ..++.+|..++..|+++.|..+|+++++.. |++. +....||.+|...+ ..++|..++
T Consensus 338 ~d~~-~-----l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~-------etm~iLG~Lya~~~~~~~~~d~a~~~l 403 (1018)
T KOG2002|consen 338 NDNF-V-----LPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNY-------ETMKILGCLYAHSAKKQEKRDKASNVL 403 (1018)
T ss_pred CCCc-c-----ccccchhHHHHHhchHHHHHHHHHHHHHhC-cchH-------HHHHHHHhHHHhhhhhhHHHHHHHHHH
Confidence 6552 1 377889999999999999999999999998 9888 99999999999876 679999999
Q ss_pred HHHHHcCCCcHHHHHHHHhh
Q 008887 515 RLAAAHNPQYNELLEQLENN 534 (550)
Q Consensus 515 ~~al~~~p~~~~~~~~l~~~ 534 (550)
.++++..|.+.+++-.+.+.
T Consensus 404 ~K~~~~~~~d~~a~l~laql 423 (1018)
T KOG2002|consen 404 GKVLEQTPVDSEAWLELAQL 423 (1018)
T ss_pred HHHHhcccccHHHHHHHHHH
Confidence 99999999999988877764
No 103
>PRK15331 chaperone protein SicA; Provisional
Probab=98.79 E-value=1.3e-07 Score=84.11 Aligned_cols=115 Identities=11% Similarity=0.112 Sum_probs=90.9
Q ss_pred HHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Q 008887 395 ALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLER 474 (550)
Q Consensus 395 aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~ 474 (550)
+..+.++..+..+..|.-+++.|++++|...|+-.... ++.++ . .+..||.|+..+++|++|+..|..
T Consensus 29 l~gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~-----d~~n~-~------Y~~GLaa~~Q~~k~y~~Ai~~Y~~ 96 (165)
T PRK15331 29 VHGIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIY-----DFYNP-D------YTMGLAAVCQLKKQFQKACDLYAV 96 (165)
T ss_pred HhCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CcCcH-H------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455667778888888888889999988888777776 66665 2 566788888888889999988888
Q ss_pred HhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHHHHH
Q 008887 475 IGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQ 530 (550)
Q Consensus 475 al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~ 530 (550)
+..+. ++|+ ...+..|.||..+|+.++|+.+|+.++. +|++......
T Consensus 97 A~~l~-~~dp-------~p~f~agqC~l~l~~~~~A~~~f~~a~~-~~~~~~l~~~ 143 (165)
T PRK15331 97 AFTLL-KNDY-------RPVFFTGQCQLLMRKAAKARQCFELVNE-RTEDESLRAK 143 (165)
T ss_pred HHHcc-cCCC-------CccchHHHHHHHhCCHHHHHHHHHHHHh-CcchHHHHHH
Confidence 88887 7777 7788888899999999999988888888 5666655443
No 104
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.79 E-value=1.5e-08 Score=81.50 Aligned_cols=84 Identities=32% Similarity=0.432 Sum_probs=68.8
Q ss_pred HcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHH
Q 008887 415 QKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGL 494 (550)
Q Consensus 415 ~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~ 494 (550)
..|++++|+.+++++++. +|.+++. ..++.+|.|+++.|++++|++.+++ .+.+ +.+. ...
T Consensus 1 ~~~~y~~Ai~~~~k~~~~-----~~~~~~~-----~~~~~la~~~~~~~~y~~A~~~~~~-~~~~-~~~~-------~~~ 61 (84)
T PF12895_consen 1 DQGNYENAIKYYEKLLEL-----DPTNPNS-----AYLYNLAQCYFQQGKYEEAIELLQK-LKLD-PSNP-------DIH 61 (84)
T ss_dssp HTT-HHHHHHHHHHHHHH-----HCGTHHH-----HHHHHHHHHHHHTTHHHHHHHHHHC-HTHH-HCHH-------HHH
T ss_pred CCccHHHHHHHHHHHHHH-----CCCChhH-----HHHHHHHHHHHHCCCHHHHHHHHHH-hCCC-CCCH-------HHH
Confidence 368999999999999999 6654322 2566799999999999999999999 6665 5444 788
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHH
Q 008887 495 VVLASALCNVGRNAEAEKYLRLA 517 (550)
Q Consensus 495 ~~La~~~~~~g~~~eA~~~l~~a 517 (550)
+.+|.|+.++|++++|++.++++
T Consensus 62 ~l~a~~~~~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 62 YLLARCLLKLGKYEEAIKALEKA 84 (84)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHhcC
Confidence 88899999999999999999875
No 105
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.78 E-value=7.8e-09 Score=99.85 Aligned_cols=143 Identities=14% Similarity=0.138 Sum_probs=127.5
Q ss_pred HHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHH
Q 008887 373 IALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVAS 452 (550)
Q Consensus 373 ~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~ 452 (550)
.-+|..|+..++.+-|+.+|++.|+..-.+++.+.++|.+.+..++++-++..|++|+... .+|... . ..|
T Consensus 328 Acia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~RAlsta---t~~~~a-a-----DvW 398 (478)
T KOG1129|consen 328 ACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQRALSTA---TQPGQA-A-----DVW 398 (478)
T ss_pred eeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHHHHhhc---cCcchh-h-----hhh
Confidence 3456678999999999999999999999999999999999999999999999999999984 234333 2 389
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHHHHHHH
Q 008887 453 QWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQLE 532 (550)
Q Consensus 453 ~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~l~ 532 (550)
||+|.+....|++.-|..+|+-++..+ ++.. +++.+||.+..+.|+.++|+.++..+-..+|+..+...++.
T Consensus 399 YNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~-------ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m~E~~~Nl~ 470 (478)
T KOG1129|consen 399 YNLGFVAVTIGDFNLAKRCFRLALTSD-AQHG-------EALNNLAVLAARSGDILGARSLLNAAKSVMPDMAEVTTNLQ 470 (478)
T ss_pred hccceeEEeccchHHHHHHHHHHhccC-cchH-------HHHHhHHHHHhhcCchHHHHHHHHHhhhhCcccccccccee
Confidence 999999999999999999999999987 7766 99999999999999999999999999999999887665543
No 106
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.77 E-value=1.5e-08 Score=78.15 Aligned_cols=65 Identities=26% Similarity=0.404 Sum_probs=62.4
Q ss_pred ChHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcC-CHHHHHHHHHHHHHH
Q 008887 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKG-LLEEAVEYLECAISK 432 (550)
Q Consensus 368 ~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g-~~~eA~~~~~~al~l 432 (550)
++..+..+|..++..|++++|+..|+++++.+|+++.+++++|.++...| ++++|++++++++++
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 46678899999999999999999999999999999999999999999999 799999999999998
No 107
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.77 E-value=2e-07 Score=105.03 Aligned_cols=130 Identities=15% Similarity=0.088 Sum_probs=85.2
Q ss_pred CCChHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhH
Q 008887 366 NLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAI 445 (550)
Q Consensus 366 ~l~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~ 445 (550)
+.....+..+|..+...|++++|++.|+++++.+|+++.++..++.+|...++.++|++.++++... +|...
T Consensus 99 n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~-----dp~~~--- 170 (822)
T PRK14574 99 NISSRGLASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAER-----DPTVQ--- 170 (822)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc-----CcchH---
Confidence 3444454455667777777777777777777777777777777777777777777777777777666 44422
Q ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHH
Q 008887 446 DLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRL 516 (550)
Q Consensus 446 ~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~ 516 (550)
.+..++.++...++..+|++.++++++.+ |++. +.+..+..++.+.|-.+.|.+..++
T Consensus 171 -----~~l~layL~~~~~~~~~AL~~~ekll~~~-P~n~-------e~~~~~~~~l~~~~~~~~a~~l~~~ 228 (822)
T PRK14574 171 -----NYMTLSYLNRATDRNYDALQASSEAVRLA-PTSE-------EVLKNHLEILQRNRIVEPALRLAKE 228 (822)
T ss_pred -----HHHHHHHHHHhcchHHHHHHHHHHHHHhC-CCCH-------HHHHHHHHHHHHcCCcHHHHHHHHh
Confidence 11223444444566656777777777776 7666 6777777777777777777655443
No 108
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.77 E-value=2.7e-08 Score=75.77 Aligned_cols=64 Identities=27% Similarity=0.362 Sum_probs=59.2
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcH
Q 008887 454 WSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYN 525 (550)
Q Consensus 454 ~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~ 525 (550)
.+|..+++.|++++|++.|+++++.. |++. .+++.+|.++.+.|++++|+..|+++++.+|+++
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~-------~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQD-PDNP-------EAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCS-TTHH-------HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHC-CCCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 58999999999999999999999998 8887 9999999999999999999999999999999874
No 109
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.77 E-value=1.2e-06 Score=78.73 Aligned_cols=131 Identities=19% Similarity=0.166 Sum_probs=111.8
Q ss_pred hHHHHHHHHHHHHcCCCCChHHHHHHHHh-hCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHH
Q 008887 369 PKELIALSVKFLSKGDKERPIPLLQLALN-KEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDL 447 (550)
Q Consensus 369 ~~~l~~la~~~~~~g~~~~A~~~~~~aL~-~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~ 447 (550)
...-+.+|......|++.+|..+|++++. ...+++..+..+++..+..+++.+|...+++..+. +|.....+..
T Consensus 89 vqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~-----~pa~r~pd~~ 163 (251)
T COG4700 89 VQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEY-----NPAFRSPDGH 163 (251)
T ss_pred HHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhc-----CCccCCCCch
Confidence 34556899999999999999999999998 77889999999999999999999999999999999 7755433322
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008887 448 LIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAA 518 (550)
Q Consensus 448 l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al 518 (550)
+ -+|+.+..+|++++|...|+.++... |. + .+...++..+.++|+.++|.+.+..+.
T Consensus 164 L-----l~aR~laa~g~~a~Aesafe~a~~~y-pg-~-------~ar~~Y~e~La~qgr~~ea~aq~~~v~ 220 (251)
T COG4700 164 L-----LFARTLAAQGKYADAESAFEVAISYY-PG-P-------QARIYYAEMLAKQGRLREANAQYVAVV 220 (251)
T ss_pred H-----HHHHHHHhcCCchhHHHHHHHHHHhC-CC-H-------HHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 3 38999999999999999999999986 43 3 688888999999999988887666543
No 110
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.76 E-value=1.9e-07 Score=93.06 Aligned_cols=160 Identities=15% Similarity=0.088 Sum_probs=126.1
Q ss_pred CCCChHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh-------c-
Q 008887 365 ENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFL-------A- 436 (550)
Q Consensus 365 ~~l~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~-------~- 436 (550)
++.+-..+.-.|..+...|+.++|+-.|+.|..+.|...++|..+-..|...|++.||....+.+++.... .
T Consensus 330 ~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g 409 (564)
T KOG1174|consen 330 EPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFG 409 (564)
T ss_pred CcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhc
Confidence 33455677788999999999999999999999999999999999999999999998887766666554200 0
Q ss_pred -----CCCCChhhHHHH-----------HHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHH
Q 008887 437 -----GHPTEPEAIDLL-----------IVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASA 500 (550)
Q Consensus 437 -----~~p~~~~~~~~l-----------~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~ 500 (550)
.+|...+....+ ..+...++..+...|++++++.++++.+... +++ ..+..||..
T Consensus 410 ~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~-~D~--------~LH~~Lgd~ 480 (564)
T KOG1174|consen 410 TLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIF-PDV--------NLHNHLGDI 480 (564)
T ss_pred ceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhc-ccc--------HHHHHHHHH
Confidence 011111111111 0145567888889999999999999999986 655 488999999
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCcHHHHHHHHh
Q 008887 501 LCNVGRNAEAEKYLRLAAAHNPQYNELLEQLEN 533 (550)
Q Consensus 501 ~~~~g~~~eA~~~l~~al~~~p~~~~~~~~l~~ 533 (550)
+...+.+.+|.++|..+++++|++....+.+.+
T Consensus 481 ~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~Gl~~ 513 (564)
T KOG1174|consen 481 MRAQNEPQKAMEYYYKALRQDPKSKRTLRGLRL 513 (564)
T ss_pred HHHhhhHHHHHHHHHHHHhcCccchHHHHHHHH
Confidence 999999999999999999999999999888876
No 111
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.75 E-value=1.8e-07 Score=85.94 Aligned_cols=106 Identities=20% Similarity=0.204 Sum_probs=82.7
Q ss_pred hHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCC---ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhH
Q 008887 369 PKELIALSVKFLSKGDKERPIPLLQLALNKEPD---NINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAI 445 (550)
Q Consensus 369 ~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~---~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~ 445 (550)
...++.+|..+...|++++|+..|+++++..++ .+.++.++|.++...|++++|++++++++++ +|......
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~-----~~~~~~~~ 109 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER-----NPFLPQAL 109 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CcCcHHHH
Confidence 445568999999999999999999999998766 3468999999999999999999999999999 77776443
Q ss_pred HHHHHHHHHHHHHHHHhcCHHHH-------HHHHHHHhcCC
Q 008887 446 DLLIVASQWSGVACIRQEKWEEG-------IAHLERIGNLK 479 (550)
Q Consensus 446 ~~l~~a~~~lg~~~~~~g~~~eA-------~~~~~~al~~~ 479 (550)
..+...+..+|..+...|++++| +..+++++..+
T Consensus 110 ~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~ 150 (168)
T CHL00033 110 NNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALA 150 (168)
T ss_pred HHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhC
Confidence 33444555555555588887755 55555566665
No 112
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.75 E-value=3.1e-08 Score=76.35 Aligned_cols=68 Identities=35% Similarity=0.497 Sum_probs=62.4
Q ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHhcCC
Q 008887 401 DNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQE-KWEEGIAHLERIGNLK 479 (550)
Q Consensus 401 ~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~g-~~~eA~~~~~~al~~~ 479 (550)
+++..+..+|.++...|++++|+.+|++++++ +|+++ .+++++|.++..+| ++++|++.++++++++
T Consensus 1 e~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~-----~p~~~-------~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~ 68 (69)
T PF13414_consen 1 ENAEAWYNLGQIYFQQGDYEEAIEYFEKAIEL-----DPNNA-------EAYYNLGLAYMKLGKDYEEAIEDFEKALKLD 68 (69)
T ss_dssp TSHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH-----STTHH-------HHHHHHHHHHHHTTTHHHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCCCH-------HHHHHHHHHHHHhCccHHHHHHHHHHHHHcC
Confidence 36789999999999999999999999999999 77776 38889999999999 7999999999999986
Q ss_pred CC
Q 008887 480 EP 481 (550)
Q Consensus 480 ~p 481 (550)
|
T Consensus 69 -P 69 (69)
T PF13414_consen 69 -P 69 (69)
T ss_dssp -T
T ss_pred -c
Confidence 5
No 113
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.74 E-value=1.7e-07 Score=100.02 Aligned_cols=132 Identities=18% Similarity=0.139 Sum_probs=122.3
Q ss_pred HHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHH
Q 008887 374 ALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQ 453 (550)
Q Consensus 374 ~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~ 453 (550)
..|..+...++.++|..++.++-+.+|..+..|+..|..+...|++++|.+.|..|+.+ +|++. . ...
T Consensus 655 laa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~l-----dP~hv-~------s~~ 722 (799)
T KOG4162|consen 655 LAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALAL-----DPDHV-P------SMT 722 (799)
T ss_pred HHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhc-----CCCCc-H------HHH
Confidence 67778888899999999999999999999999999999999999999999999999999 88887 2 555
Q ss_pred HHHHHHHHhcCHHHHHH--HHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcH
Q 008887 454 WSGVACIRQEKWEEGIA--HLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYN 525 (550)
Q Consensus 454 ~lg~~~~~~g~~~eA~~--~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~ 525 (550)
.+|.++.+.|+-.-|.. .+..+++++ |.++ ++|+++|.++.+.|+.++|.++|..++++.+.++
T Consensus 723 Ala~~lle~G~~~la~~~~~L~dalr~d-p~n~-------eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~P 788 (799)
T KOG4162|consen 723 ALAELLLELGSPRLAEKRSLLSDALRLD-PLNH-------EAWYYLGEVFKKLGDSKQAAECFQAALQLEESNP 788 (799)
T ss_pred HHHHHHHHhCCcchHHHHHHHHHHHhhC-CCCH-------HHHHHHHHHHHHccchHHHHHHHHHHHhhccCCC
Confidence 79999999999888888 999999998 9999 9999999999999999999999999999987665
No 114
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.74 E-value=1.2e-07 Score=97.79 Aligned_cols=130 Identities=18% Similarity=0.080 Sum_probs=95.8
Q ss_pred HHHHcCCCCChHHHHHHHH----hhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHH
Q 008887 378 KFLSKGDKERPIPLLQLAL----NKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQ 453 (550)
Q Consensus 378 ~~~~~g~~~~A~~~~~~aL----~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~ 453 (550)
.+...|++..+.....+++ ..+|+...++..+|.++...|++++|++.+++++++ +|.+. . ++.
T Consensus 85 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~-----~p~~~-~------~~~ 152 (355)
T cd05804 85 GAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALEL-----NPDDA-W------AVH 152 (355)
T ss_pred HHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CCCCc-H------HHH
Confidence 4444444444444444444 344555666677888899999999999999999998 77775 2 667
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 008887 454 WSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQ 523 (550)
Q Consensus 454 ~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~ 523 (550)
.+|.++...|++++|+++++++++.. +.++ ......+..+|.++...|++++|...|++++...|.
T Consensus 153 ~la~i~~~~g~~~eA~~~l~~~l~~~-~~~~---~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~ 218 (355)
T cd05804 153 AVAHVLEMQGRFKEGIAFMESWRDTW-DCSS---MLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAE 218 (355)
T ss_pred HHHHHHHHcCCHHHHHHHHHhhhhcc-CCCc---chhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccC
Confidence 78999999999999999999998876 5432 112245668899999999999999999998776663
No 115
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.73 E-value=6.1e-07 Score=91.74 Aligned_cols=122 Identities=22% Similarity=0.238 Sum_probs=110.3
Q ss_pred hCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhc
Q 008887 398 KEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGN 477 (550)
Q Consensus 398 ~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~ 477 (550)
.+|....++|..+..++..|++++|+..++..+.. .|+++ + .+-..+.++.+.|+.++|.+.+++++.
T Consensus 301 ~~~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~-----~P~N~-~------~~~~~~~i~~~~nk~~~A~e~~~kal~ 368 (484)
T COG4783 301 SKRGGLAAQYGRALQTYLAGQYDEALKLLQPLIAA-----QPDNP-Y------YLELAGDILLEANKAKEAIERLKKALA 368 (484)
T ss_pred hCccchHHHHHHHHHHHHhcccchHHHHHHHHHHh-----CCCCH-H------HHHHHHHHHHHcCChHHHHHHHHHHHh
Confidence 33788999999999999999999999999998888 88877 3 444678999999999999999999999
Q ss_pred CCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHHHHHHHhhHHHHH
Q 008887 478 LKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQLENNDEEFV 539 (550)
Q Consensus 478 ~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~l~~~~~~~~ 539 (550)
.+ |... -...++|.+|.+.|++++|+..+++.+..+|+++..|..|.++.++.+
T Consensus 369 l~-P~~~-------~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g 422 (484)
T COG4783 369 LD-PNSP-------LLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELG 422 (484)
T ss_pred cC-CCcc-------HHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhC
Confidence 98 8777 899999999999999999999999999999999999999998765543
No 116
>PRK11906 transcriptional regulator; Provisional
Probab=98.73 E-value=2.3e-07 Score=95.33 Aligned_cols=136 Identities=10% Similarity=0.006 Sum_probs=119.5
Q ss_pred HHHHHHHHHHHcCC---CCChHHHHHHHH---hhCCCChHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHHhhh
Q 008887 371 ELIALSVKFLSKGD---KERPIPLLQLAL---NKEPDNINALILMGQTQLQK---------GLLEEAVEYLECAISKLFL 435 (550)
Q Consensus 371 ~l~~la~~~~~~g~---~~~A~~~~~~aL---~~~p~~~~a~~~lg~~~~~~---------g~~~eA~~~~~~al~l~~~ 435 (550)
+++-.|..++..+. .+.|+.+|.+|+ +.+|+++.++-.++.++... .+-.+|.+..++|+++
T Consensus 257 d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAvel--- 333 (458)
T PRK11906 257 DEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDI--- 333 (458)
T ss_pred HHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhc---
Confidence 66777777776664 456899999999 89999999999999998765 2345788999999999
Q ss_pred cCCCCChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHH
Q 008887 436 AGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLR 515 (550)
Q Consensus 436 ~~~p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~ 515 (550)
+|.++ . +...+|.++...++++.|...|++++.++ |+.. .+++..|.+..-.|+.++|.+..+
T Consensus 334 --d~~Da-~------a~~~~g~~~~~~~~~~~a~~~f~rA~~L~-Pn~A-------~~~~~~~~~~~~~G~~~~a~~~i~ 396 (458)
T PRK11906 334 --TTVDG-K------ILAIMGLITGLSGQAKVSHILFEQAKIHS-TDIA-------SLYYYRALVHFHNEKIEEARICID 396 (458)
T ss_pred --CCCCH-H------HHHHHHHHHHhhcchhhHHHHHHHHhhcC-CccH-------HHHHHHHHHHHHcCCHHHHHHHHH
Confidence 88888 3 77789999999999999999999999998 9888 999999999999999999999999
Q ss_pred HHHHcCCCcHH
Q 008887 516 LAAAHNPQYNE 526 (550)
Q Consensus 516 ~al~~~p~~~~ 526 (550)
++++++|.-..
T Consensus 397 ~alrLsP~~~~ 407 (458)
T PRK11906 397 KSLQLEPRRRK 407 (458)
T ss_pred HHhccCchhhH
Confidence 99999998655
No 117
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.72 E-value=1.1e-06 Score=92.37 Aligned_cols=139 Identities=14% Similarity=0.089 Sum_probs=110.9
Q ss_pred HHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHH-HHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHH
Q 008887 371 ELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILM-GQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLI 449 (550)
Q Consensus 371 ~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~l-g~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~ 449 (550)
..+..|...+..||+++|++...++-+.. +++..++.+ +.+..+.|++++|.++++++.+. +|++...
T Consensus 86 ~~~~~gl~a~~eGd~~~A~k~l~~~~~~~-~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~-----~~~~~~~----- 154 (398)
T PRK10747 86 KQTEQALLKLAEGDYQQVEKLMTRNADHA-EQPVVNYLLAAEAAQQRGDEARANQHLERAAEL-----ADNDQLP----- 154 (398)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhcc-cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-----CCcchHH-----
Confidence 44578888889999999997777765443 345555555 66669999999999999999888 6665411
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHHHH
Q 008887 450 VASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLE 529 (550)
Q Consensus 450 ~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~ 529 (550)
.....+..+...|++++|++.+++..+.. |+++ .++..++.+|.+.|++++|.+.+.+..+......+...
T Consensus 155 -~~l~~a~l~l~~g~~~~Al~~l~~~~~~~-P~~~-------~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~ 225 (398)
T PRK10747 155 -VEITRVRIQLARNENHAARHGVDKLLEVA-PRHP-------EVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRA 225 (398)
T ss_pred -HHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCH-------HHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHH
Confidence 22234889999999999999999999998 9888 99999999999999999999999998887766554333
No 118
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.72 E-value=1e-07 Score=98.10 Aligned_cols=128 Identities=15% Similarity=0.157 Sum_probs=111.5
Q ss_pred hHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHH
Q 008887 369 PKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLL 448 (550)
Q Consensus 369 ~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l 448 (550)
+++..+.|..++..|+|.+|+.+|.++++.+|+++.+|.++|.+|.+.|.+.+|+...++++++ +|+..
T Consensus 358 A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL-----~p~~~------ 426 (539)
T KOG0548|consen 358 AEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIEL-----DPNFI------ 426 (539)
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-----CchHH------
Confidence 3344578999999999999999999999999999999999999999999999999999999999 66665
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHH
Q 008887 449 IVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRL 516 (550)
Q Consensus 449 ~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~ 516 (550)
.+|..-|.++....+|++|.+.|+++++.+ |++. ++...+.+|+..+.......+.+++
T Consensus 427 -kgy~RKg~al~~mk~ydkAleay~eale~d-p~~~-------e~~~~~~rc~~a~~~~~~~ee~~~r 485 (539)
T KOG0548|consen 427 -KAYLRKGAALRAMKEYDKALEAYQEALELD-PSNA-------EAIDGYRRCVEAQRGDETPEETKRR 485 (539)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-chhH-------HHHHHHHHHHHHhhcCCCHHHHHHh
Confidence 377788999999999999999999999998 8887 8888888998875444444445554
No 119
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=98.71 E-value=5.9e-07 Score=87.17 Aligned_cols=143 Identities=22% Similarity=0.253 Sum_probs=124.0
Q ss_pred HHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHH
Q 008887 371 ELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIV 450 (550)
Q Consensus 371 ~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~ 450 (550)
-.+++|..+....+.+.|...+++|++.+|++.++-..+|.++...|+|++|++.++.+++. ||..- .+
T Consensus 182 fyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQ-----n~~yl------~e 250 (389)
T COG2956 182 FYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQ-----NPEYL------SE 250 (389)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHh-----ChHHH------HH
Confidence 44599999999999999999999999999999999999999999999999999999999998 44433 33
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHHHHH
Q 008887 451 ASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQ 530 (550)
Q Consensus 451 a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~ 530 (550)
....|..||.++|+.++++..+.++.+.. +. . ++...+++.-....-.++|..++.+-++.+|......+.
T Consensus 251 vl~~L~~~Y~~lg~~~~~~~fL~~~~~~~-~g-~-------~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl 321 (389)
T COG2956 251 VLEMLYECYAQLGKPAEGLNFLRRAMETN-TG-A-------DAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRL 321 (389)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHcc-CC-c-------cHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHH
Confidence 55679999999999999999999999985 32 2 577788888888888999999999999999998877765
Q ss_pred HHh
Q 008887 531 LEN 533 (550)
Q Consensus 531 l~~ 533 (550)
++.
T Consensus 322 ~~~ 324 (389)
T COG2956 322 MDY 324 (389)
T ss_pred HHh
Confidence 543
No 120
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.70 E-value=2.2e-07 Score=84.12 Aligned_cols=115 Identities=21% Similarity=0.235 Sum_probs=100.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCC
Q 008887 404 NALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEE 483 (550)
Q Consensus 404 ~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~ 483 (550)
.-+..-|+-++..|+|++|..-|..|++. .|..+.....+ .+.+.|.|++++++++.|++.+.++++++ |.+
T Consensus 96 d~lK~EGN~~F~ngdyeeA~skY~~Ale~-----cp~~~~e~rsI--ly~Nraaa~iKl~k~e~aI~dcsKaiel~-pty 167 (271)
T KOG4234|consen 96 DSLKKEGNELFKNGDYEEANSKYQEALES-----CPSTSTEERSI--LYSNRAAALIKLRKWESAIEDCSKAIELN-PTY 167 (271)
T ss_pred HHHHHHHHHhhhcccHHHHHHHHHHHHHh-----CccccHHHHHH--HHhhhHHHHHHhhhHHHHHHHHHhhHhcC-chh
Confidence 34556688899999999999999999999 78766432222 67789999999999999999999999998 877
Q ss_pred ccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHHHHHHHh
Q 008887 484 PKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQLEN 533 (550)
Q Consensus 484 ~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~l~~ 533 (550)
. .++...|.+|.++.++++|+..|+++++.+|...++++.+.+
T Consensus 168 ~-------kAl~RRAeayek~ek~eealeDyKki~E~dPs~~ear~~i~r 210 (271)
T KOG4234|consen 168 E-------KALERRAEAYEKMEKYEEALEDYKKILESDPSRREAREAIAR 210 (271)
T ss_pred H-------HHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcchHHHHHHHHh
Confidence 7 899999999999999999999999999999999988877765
No 121
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.70 E-value=3e-07 Score=84.76 Aligned_cols=100 Identities=18% Similarity=0.197 Sum_probs=81.9
Q ss_pred ChHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhh
Q 008887 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDN---INALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEA 444 (550)
Q Consensus 368 ~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~---~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~ 444 (550)
.....+.+|..+...|++++|+.+|+++++..|+. ..++..+|.++.+.|++++|+++++++++. +|.+. .
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~~-~ 107 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL-----NPKQP-S 107 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CcccH-H
Confidence 44456799999999999999999999999887653 568999999999999999999999999999 77665 2
Q ss_pred HHHHHHHHHHHHHHHHHhcC--------------HHHHHHHHHHHhcCC
Q 008887 445 IDLLIVASQWSGVACIRQEK--------------WEEGIAHLERIGNLK 479 (550)
Q Consensus 445 ~~~l~~a~~~lg~~~~~~g~--------------~~eA~~~~~~al~~~ 479 (550)
++..+|.++...|+ +++|++.++++++.+
T Consensus 108 ------~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~ 150 (172)
T PRK02603 108 ------ALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLA 150 (172)
T ss_pred ------HHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhC
Confidence 55677888887776 456666666666665
No 122
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.70 E-value=4.3e-07 Score=93.77 Aligned_cols=101 Identities=15% Similarity=0.116 Sum_probs=87.6
Q ss_pred HHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHH
Q 008887 371 ELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIV 450 (550)
Q Consensus 371 ~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~ 450 (550)
....+|..+...|++++|++.++++++.+|++..++..+|.++...|++++|+++++++++. .|.++. ....
T Consensus 116 ~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~-----~~~~~~---~~~~ 187 (355)
T cd05804 116 LLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDT-----WDCSSM---LRGH 187 (355)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhc-----cCCCcc---hhHH
Confidence 33477889999999999999999999999999999999999999999999999999999988 554321 1112
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHhcCC
Q 008887 451 ASQWSGVACIRQEKWEEGIAHLERIGNLK 479 (550)
Q Consensus 451 a~~~lg~~~~~~g~~~eA~~~~~~al~~~ 479 (550)
.+..+|.++..+|++++|++.+++++...
T Consensus 188 ~~~~la~~~~~~G~~~~A~~~~~~~~~~~ 216 (355)
T cd05804 188 NWWHLALFYLERGDYEAALAIYDTHIAPS 216 (355)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhccc
Confidence 67789999999999999999999997765
No 123
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.69 E-value=2.7e-07 Score=96.89 Aligned_cols=130 Identities=15% Similarity=0.188 Sum_probs=112.3
Q ss_pred ChHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHH
Q 008887 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDL 447 (550)
Q Consensus 368 ~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~ 447 (550)
+++.....|..+...|+.++|.+.++++++. +.+......++.+ ..++.+++++.+++.++. +|+++ .
T Consensus 262 ~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~-~~~~~l~~l~~~l--~~~~~~~al~~~e~~lk~-----~P~~~-~--- 329 (398)
T PRK10747 262 QVALQVAMAEHLIECDDHDTAQQIILDGLKR-QYDERLVLLIPRL--KTNNPEQLEKVLRQQIKQ-----HGDTP-L--- 329 (398)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-CCCHHHHHHHhhc--cCCChHHHHHHHHHHHhh-----CCCCH-H---
Confidence 6777789999999999999999999999995 4466655555554 449999999999999999 88887 2
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 008887 448 LIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHN 521 (550)
Q Consensus 448 l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~ 521 (550)
.+..+|..+...|++++|.++|+++++.. |++. .+..++.++.+.|+.++|.++|++++.+.
T Consensus 330 ---l~l~lgrl~~~~~~~~~A~~~le~al~~~-P~~~--------~~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 330 ---LWSTLGQLLMKHGEWQEASLAFRAALKQR-PDAY--------DYAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred ---HHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCHH--------HHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 56679999999999999999999999997 7654 57799999999999999999999998754
No 124
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.69 E-value=3.3e-07 Score=92.02 Aligned_cols=153 Identities=16% Similarity=0.173 Sum_probs=110.0
Q ss_pred hHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHH
Q 008887 369 PKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLL 448 (550)
Q Consensus 369 ~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l 448 (550)
.++++++|..+-..|++++|+++|-+.-.+--+++++++.++.+|....+..+|++++-++..+ -|++|..-..+
T Consensus 524 ~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~sl-----ip~dp~ilskl 598 (840)
T KOG2003|consen 524 TEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-----IPNDPAILSKL 598 (840)
T ss_pred HHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-----CCCCHHHHHHH
Confidence 3566677777777777777777777665555556666666666666666666666666666555 44444221111
Q ss_pred H---------------------------HHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHH
Q 008887 449 I---------------------------VASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASAL 501 (550)
Q Consensus 449 ~---------------------------~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~ 501 (550)
. +..-++|..|....-.++|+.+|+++.-++ |+.. .-....+.|+
T Consensus 599 ~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliq-p~~~-------kwqlmiasc~ 670 (840)
T KOG2003|consen 599 ADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQ-PNQS-------KWQLMIASCF 670 (840)
T ss_pred HHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcC-ccHH-------HHHHHHHHHH
Confidence 1 133468888888888999999999988887 7665 6677889999
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCcHHHHHHHHhh
Q 008887 502 CNVGRNAEAEKYLRLAAAHNPQYNELLEQLENN 534 (550)
Q Consensus 502 ~~~g~~~eA~~~l~~al~~~p~~~~~~~~l~~~ 534 (550)
.+.|+|.+|.+.|+..-+.-|++.+.++.|-++
T Consensus 671 rrsgnyqka~d~yk~~hrkfpedldclkflvri 703 (840)
T KOG2003|consen 671 RRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRI 703 (840)
T ss_pred HhcccHHHHHHHHHHHHHhCccchHHHHHHHHH
Confidence 999999999999999988888888877665543
No 125
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.69 E-value=3e-07 Score=80.09 Aligned_cols=108 Identities=23% Similarity=0.286 Sum_probs=97.5
Q ss_pred CChHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChh
Q 008887 367 LTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDN---INALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPE 443 (550)
Q Consensus 367 l~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~---~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~ 443 (550)
.++.+++..|...+..|+|++|++.|+......|.. ..+...+|.+|++.|++++|+..+++-+++ +|+++.
T Consensus 8 ~~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirL-----hP~hp~ 82 (142)
T PF13512_consen 8 KSPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRL-----HPTHPN 82 (142)
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----CCCCCC
Confidence 588999999999999999999999999999988764 578899999999999999999999999999 999985
Q ss_pred hHHHHHHHHHHHHHHHHHhcC---------------HHHHHHHHHHHhcCCCCCCc
Q 008887 444 AIDLLIVASQWSGVACIRQEK---------------WEEGIAHLERIGNLKEPEEP 484 (550)
Q Consensus 444 ~~~~l~~a~~~lg~~~~~~g~---------------~~eA~~~~~~al~~~~p~~~ 484 (550)
.. .+++..|.+++++.. ..+|...|++.++.. |+..
T Consensus 83 vd----Ya~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~y-P~S~ 133 (142)
T PF13512_consen 83 VD----YAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRY-PNSE 133 (142)
T ss_pred cc----HHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHC-cCCh
Confidence 43 477789999999877 889999999999998 8765
No 126
>PRK15331 chaperone protein SicA; Provisional
Probab=98.68 E-value=2.3e-07 Score=82.57 Aligned_cols=102 Identities=12% Similarity=0.108 Sum_probs=91.4
Q ss_pred hHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHH
Q 008887 369 PKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLL 448 (550)
Q Consensus 369 ~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l 448 (550)
-+.++..|..++..|++++|+..|+-....+|.+.+.+..||.++..+|+|++|+..|..+..+ ++++| .
T Consensus 37 le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l-----~~~dp-~---- 106 (165)
T PRK15331 37 MDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTL-----LKNDY-R---- 106 (165)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-----ccCCC-C----
Confidence 3466799999999999999999999999999999999999999999999999999999999988 66666 2
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCc
Q 008887 449 IVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEP 484 (550)
Q Consensus 449 ~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~ 484 (550)
..+..|.|+...|+.++|..+|+.+++. |.+.
T Consensus 107 --p~f~agqC~l~l~~~~~A~~~f~~a~~~--~~~~ 138 (165)
T PRK15331 107 --PVFFTGQCQLLMRKAAKARQCFELVNER--TEDE 138 (165)
T ss_pred --ccchHHHHHHHhCCHHHHHHHHHHHHhC--cchH
Confidence 4557999999999999999999999986 5443
No 127
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.68 E-value=2.6e-07 Score=88.58 Aligned_cols=107 Identities=22% Similarity=0.282 Sum_probs=96.1
Q ss_pred ChHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhh
Q 008887 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDN---INALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEA 444 (550)
Q Consensus 368 ~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~---~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~ 444 (550)
+++.+++.|..++..|+|.+|...|...++.+|+. ++++|+||++++.+|++++|...|..+.+. .|.++..
T Consensus 140 ~~~~~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~-----~P~s~KA 214 (262)
T COG1729 140 PATKLYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKD-----YPKSPKA 214 (262)
T ss_pred chhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHh-----CCCCCCC
Confidence 34458899999999999999999999999999875 689999999999999999999999999998 8887766
Q ss_pred HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCc
Q 008887 445 IDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEP 484 (550)
Q Consensus 445 ~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~ 484 (550)
.+ +.+.+|.|..++|+.++|...++++++.. |...
T Consensus 215 pd----allKlg~~~~~l~~~d~A~atl~qv~k~Y-P~t~ 249 (262)
T COG1729 215 PD----ALLKLGVSLGRLGNTDEACATLQQVIKRY-PGTD 249 (262)
T ss_pred hH----HHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCCH
Confidence 54 44469999999999999999999999998 8665
No 128
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.68 E-value=3.3e-07 Score=96.66 Aligned_cols=134 Identities=15% Similarity=0.125 Sum_probs=110.0
Q ss_pred ChHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHH--HHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhH
Q 008887 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINAL--ILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAI 445 (550)
Q Consensus 368 ~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~--~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~ 445 (550)
+++.....|..+...|++++|.+.++++++.+|++.... ..........++.+++++.++++++. +|++++ .
T Consensus 262 ~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~-----~p~~~~-~ 335 (409)
T TIGR00540 262 NIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN-----VDDKPK-C 335 (409)
T ss_pred CHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh-----CCCChh-H
Confidence 566667899999999999999999999999999987542 33444445568899999999999999 888873 1
Q ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHH--HHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 008887 446 DLLIVASQWSGVACIRQEKWEEGIAHLE--RIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAH 520 (550)
Q Consensus 446 ~~l~~a~~~lg~~~~~~g~~~eA~~~~~--~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~ 520 (550)
. ....+|..+++.|++++|.++|+ ++++.. |+.. .+..+|.++.+.|+.++|.++|++++..
T Consensus 336 ~----ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~-p~~~--------~~~~La~ll~~~g~~~~A~~~~~~~l~~ 399 (409)
T TIGR00540 336 C----INRALGQLLMKHGEFIEAADAFKNVAACKEQ-LDAN--------DLAMAADAFDQAGDKAEAAAMRQDSLGL 399 (409)
T ss_pred H----HHHHHHHHHHHcccHHHHHHHHHHhHHhhcC-CCHH--------HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 1 34469999999999999999999 576675 6443 4669999999999999999999998653
No 129
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.67 E-value=7.2e-07 Score=83.89 Aligned_cols=141 Identities=17% Similarity=0.125 Sum_probs=124.5
Q ss_pred HHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHH
Q 008887 374 ALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQ 453 (550)
Q Consensus 374 ~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~ 453 (550)
....+.+..|+.+.|..++++.....|++.+.....|..+...|++++|+++|+..++- +|++. . .+-
T Consensus 57 qV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~d-----dpt~~-v------~~K 124 (289)
T KOG3060|consen 57 QVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLED-----DPTDT-V------IRK 124 (289)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhcc-----Ccchh-H------HHH
Confidence 56667888999999999999998888999999999999999999999999999999998 88776 2 222
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHHHHHHHh
Q 008887 454 WSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQLEN 533 (550)
Q Consensus 454 ~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~l~~ 533 (550)
.--.+...+|+.-+|++.+.+.++.. +.|. ++|..++++|...|++++|.-+|++++-++|.+.-+..++.+
T Consensus 125 RKlAilka~GK~l~aIk~ln~YL~~F-~~D~-------EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae 196 (289)
T KOG3060|consen 125 RKLAILKAQGKNLEAIKELNEYLDKF-MNDQ-------EAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAE 196 (289)
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHHHh-cCcH-------HHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHH
Confidence 23345667899999999999999998 8888 999999999999999999999999999999999988777765
Q ss_pred h
Q 008887 534 N 534 (550)
Q Consensus 534 ~ 534 (550)
.
T Consensus 197 ~ 197 (289)
T KOG3060|consen 197 V 197 (289)
T ss_pred H
Confidence 3
No 130
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.67 E-value=1.6e-07 Score=93.69 Aligned_cols=147 Identities=14% Similarity=0.085 Sum_probs=127.8
Q ss_pred HHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHH-----
Q 008887 374 ALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLL----- 448 (550)
Q Consensus 374 ~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l----- 448 (550)
-.+.++...|++++|.+.--..+++++.+.++++..|.+++..++.+.|+.+|++++.+ +|.+.......
T Consensus 174 lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~l-----dpdh~~sk~~~~~~k~ 248 (486)
T KOG0550|consen 174 LKAECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALRL-----DPDHQKSKSASMMPKK 248 (486)
T ss_pred hhhhhhhhcccchhHHHHHHHHHhcccchhHHHHhcccccccccchHHHHHHHhhhhcc-----ChhhhhHHhHhhhHHH
Confidence 56778899999999999999999999999999999999999999999999999999999 77765332111
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHHH
Q 008887 449 IVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELL 528 (550)
Q Consensus 449 ~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~ 528 (550)
.+.+..-|.-.++.|+|.+|.+.|.++|.++ |++. ......|.+.|.+..++|+.++|+..+++++++++.+..++
T Consensus 249 le~~k~~gN~~fk~G~y~~A~E~Yteal~id-P~n~---~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikal 324 (486)
T KOG0550|consen 249 LEVKKERGNDAFKNGNYRKAYECYTEALNID-PSNK---KTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKAL 324 (486)
T ss_pred HHHHHhhhhhHhhccchhHHHHHHHHhhcCC-cccc---chhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHH
Confidence 1256667888999999999999999999998 8755 44557899999999999999999999999999999988754
Q ss_pred H
Q 008887 529 E 529 (550)
Q Consensus 529 ~ 529 (550)
.
T Consensus 325 l 325 (486)
T KOG0550|consen 325 L 325 (486)
T ss_pred H
Confidence 4
No 131
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.66 E-value=3.1e-08 Score=79.73 Aligned_cols=82 Identities=28% Similarity=0.406 Sum_probs=67.0
Q ss_pred HcCCCCChHHHHHHHHhhCCC--ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHH
Q 008887 381 SKGDKERPIPLLQLALNKEPD--NINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVA 458 (550)
Q Consensus 381 ~~g~~~~A~~~~~~aL~~~p~--~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~ 458 (550)
.+|++++|+..++++++.+|. +...++.+|.+|++.|++++|++.+++ ... ++.+. ...+.+|.|
T Consensus 1 ~~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~-----~~~~~-------~~~~l~a~~ 67 (84)
T PF12895_consen 1 DQGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKL-----DPSNP-------DIHYLLARC 67 (84)
T ss_dssp HTT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTH-----HHCHH-------HHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCC-----CCCCH-------HHHHHHHHH
Confidence 368999999999999999995 466778899999999999999999998 555 33222 255567999
Q ss_pred HHHhcCHHHHHHHHHHH
Q 008887 459 CIRQEKWEEGIAHLERI 475 (550)
Q Consensus 459 ~~~~g~~~eA~~~~~~a 475 (550)
+.++|++++|++.++++
T Consensus 68 ~~~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 68 LLKLGKYEEAIKALEKA 84 (84)
T ss_dssp HHHTT-HHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHhcC
Confidence 99999999999999875
No 132
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=98.65 E-value=4.2e-07 Score=95.19 Aligned_cols=151 Identities=18% Similarity=0.082 Sum_probs=131.2
Q ss_pred HHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHH
Q 008887 373 IALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVAS 452 (550)
Q Consensus 373 ~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~ 452 (550)
.-.|..+...||...|...+.++++.+|++-+.|..--.+.....+++.|...|.++... .|+.. .|
T Consensus 588 lM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~-----sgTeR--------v~ 654 (913)
T KOG0495|consen 588 LMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSI-----SGTER--------VW 654 (913)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc-----CCcch--------hh
Confidence 356677888899999999999999999999999999999999999999999999999887 55554 66
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHHHHHHH
Q 008887 453 QWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQLE 532 (550)
Q Consensus 453 ~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~l~ 532 (550)
+.-+.....+++.++|+.+++++++.. |.+. ..|..+|+++.++++.+.|++.|...++..|+....|-.+.
T Consensus 655 mKs~~~er~ld~~eeA~rllEe~lk~f-p~f~-------Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLa 726 (913)
T KOG0495|consen 655 MKSANLERYLDNVEEALRLLEEALKSF-PDFH-------KLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLA 726 (913)
T ss_pred HHHhHHHHHhhhHHHHHHHHHHHHHhC-CchH-------HHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHH
Confidence 677888888999999999999999998 8887 99999999999999999999999999999999999999888
Q ss_pred hhHHHHHhhhhhc
Q 008887 533 NNDEEFVSDLSSS 545 (550)
Q Consensus 533 ~~~~~~~~~l~~~ 545 (550)
+. ++....+.++
T Consensus 727 kl-eEk~~~~~rA 738 (913)
T KOG0495|consen 727 KL-EEKDGQLVRA 738 (913)
T ss_pred HH-HHHhcchhhH
Confidence 84 4333344433
No 133
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.64 E-value=6.2e-07 Score=76.80 Aligned_cols=103 Identities=25% Similarity=0.173 Sum_probs=83.2
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCC
Q 008887 403 INALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPE 482 (550)
Q Consensus 403 ~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~ 482 (550)
+.+++.+|.++...|+.++|+.+|+++++. ........ .++..+|.++...|++++|+..+++++... |+
T Consensus 1 ~~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~-----gL~~~~~~----~a~i~lastlr~LG~~deA~~~L~~~~~~~-p~ 70 (120)
T PF12688_consen 1 PRALYELAWAHDSLGREEEAIPLYRRALAA-----GLSGADRR----RALIQLASTLRNLGRYDEALALLEEALEEF-PD 70 (120)
T ss_pred CchHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCchHHH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CC
Confidence 357889999999999999999999999887 44433222 367789999999999999999999999876 76
Q ss_pred CccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008887 483 EPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAA 519 (550)
Q Consensus 483 ~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~ 519 (550)
+. ........++.++...|+++||+..+-.++.
T Consensus 71 ~~----~~~~l~~f~Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 71 DE----LNAALRVFLALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred cc----ccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 33 2226777888999999999999998887775
No 134
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.62 E-value=6.2e-07 Score=86.09 Aligned_cols=111 Identities=22% Similarity=0.232 Sum_probs=97.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCcc
Q 008887 406 LILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPK 485 (550)
Q Consensus 406 ~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~ 485 (550)
.|+.|.-+++.|||.+|.+.|.+-+.. .|+..... .++||||.+++.+|+|++|...|..+.+.. |+.+
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~-----YP~s~~~~----nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~-P~s~- 212 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKK-----YPNSTYTP----NAYYWLGESLYAQGDYEDAAYIFARVVKDY-PKSP- 212 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCCCcccc----hhHHHHHHHHHhcccchHHHHHHHHHHHhC-CCCC-
Confidence 777888889999999999999999999 77665332 599999999999999999999999999987 7766
Q ss_pred ccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHHHHH
Q 008887 486 SKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQ 530 (550)
Q Consensus 486 ~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~ 530 (550)
...++++.+|.|..++|+.++|...|+++++..|+...+...
T Consensus 213 ---KApdallKlg~~~~~l~~~d~A~atl~qv~k~YP~t~aA~~A 254 (262)
T COG1729 213 ---KAPDALLKLGVSLGRLGNTDEACATLQQVIKRYPGTDAAKLA 254 (262)
T ss_pred ---CChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCCHHHHHH
Confidence 444899999999999999999999999999999998876543
No 135
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.55 E-value=6.4e-07 Score=94.00 Aligned_cols=143 Identities=15% Similarity=0.118 Sum_probs=129.2
Q ss_pred HHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHH
Q 008887 370 KELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLI 449 (550)
Q Consensus 370 ~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~ 449 (550)
..++..+...+..++|...++..+..|+..|++++.+...|..+...|+-++|..+.+.+++. ++...
T Consensus 8 ~~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~-----d~~S~------- 75 (700)
T KOG1156|consen 8 NALFRRALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRN-----DLKSH------- 75 (700)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhcc-----Ccccc-------
Confidence 366789999999999999999999999999999999999999999999999999999999987 77665
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHHHH
Q 008887 450 VASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLE 529 (550)
Q Consensus 450 ~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~ 529 (550)
..|+.+|..+...++|++|+++|+.|+..+ +++. ..+.-++-+..++|+++.....-.+.++..|.....|-
T Consensus 76 vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~-~dN~-------qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~ 147 (700)
T KOG1156|consen 76 VCWHVLGLLQRSDKKYDEAIKCYRNALKIE-KDNL-------QILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWI 147 (700)
T ss_pred hhHHHHHHHHhhhhhHHHHHHHHHHHHhcC-CCcH-------HHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHH
Confidence 388999999999999999999999999998 8877 89999999999999999999998899999888877665
Q ss_pred HHH
Q 008887 530 QLE 532 (550)
Q Consensus 530 ~l~ 532 (550)
.+.
T Consensus 148 ~~A 150 (700)
T KOG1156|consen 148 GFA 150 (700)
T ss_pred HHH
Confidence 443
No 136
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.53 E-value=2.9e-07 Score=97.80 Aligned_cols=134 Identities=17% Similarity=0.103 Sum_probs=119.8
Q ss_pred ChHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHH
Q 008887 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDL 447 (550)
Q Consensus 368 ~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~ 447 (550)
++++....|...+..++|+++.++++..++.+|-....|+.+|.++.+.++++.|.++|.+++.+ +|++.
T Consensus 484 sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL-----~Pd~~----- 553 (777)
T KOG1128|consen 484 SARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTL-----EPDNA----- 553 (777)
T ss_pred hHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhc-----CCCch-----
Confidence 44444455555677899999999999999999999999999999999999999999999999999 88887
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 008887 448 LIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHN 521 (550)
Q Consensus 448 l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~ 521 (550)
++|+|++.+|.+.|+-.+|...+.++++.+ -... ..|.+.-.+..+.|.+++|+++|.+.+.+.
T Consensus 554 --eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w-------~iWENymlvsvdvge~eda~~A~~rll~~~ 617 (777)
T KOG1128|consen 554 --EAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHW-------QIWENYMLVSVDVGEFEDAIKAYHRLLDLR 617 (777)
T ss_pred --hhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCC-------eeeechhhhhhhcccHHHHHHHHHHHHHhh
Confidence 499999999999999999999999999986 5555 788888889999999999999999988765
No 137
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.53 E-value=1.2e-06 Score=98.09 Aligned_cols=138 Identities=17% Similarity=0.151 Sum_probs=117.6
Q ss_pred ChHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCCh--hhH
Q 008887 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEP--EAI 445 (550)
Q Consensus 368 ~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~--~~~ 445 (550)
..+++..+...+...+++++|++.++.+++.+|+...+++.+|.++.+.+++.++... .++.. .+.+. ...
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~-----~~~~~~~~~v 102 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDS-----FSQNLKWAIV 102 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhh-----cccccchhHH
Confidence 4556678999999999999999999999999999999999999999999999988776 66655 22221 112
Q ss_pred HHHH----------HHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHH
Q 008887 446 DLLI----------VASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLR 515 (550)
Q Consensus 446 ~~l~----------~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~ 515 (550)
.++. .+++.+|.||.+.|+.++|.+.++++++.+ |+++ .++.++|-.|... +.++|++++.
T Consensus 103 e~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~-------~aLNn~AY~~ae~-dL~KA~~m~~ 173 (906)
T PRK14720 103 EHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNP-------EIVKKLATSYEEE-DKEKAITYLK 173 (906)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccH-------HHHHHHHHHHHHh-hHHHHHHHHH
Confidence 2222 378889999999999999999999999998 9888 9999999999999 9999999999
Q ss_pred HHHHcC
Q 008887 516 LAAAHN 521 (550)
Q Consensus 516 ~al~~~ 521 (550)
++++..
T Consensus 174 KAV~~~ 179 (906)
T PRK14720 174 KAIYRF 179 (906)
T ss_pred HHHHHH
Confidence 998764
No 138
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.52 E-value=7.2e-07 Score=89.01 Aligned_cols=144 Identities=17% Similarity=0.136 Sum_probs=107.5
Q ss_pred ChHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHH
Q 008887 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDL 447 (550)
Q Consensus 368 ~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~ 447 (550)
....++--+...+..++++.|+.+-+++++.+|.+.+++...|.++...|+.++|+-.|+.|..+ .|..-
T Consensus 299 ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~L-----ap~rL----- 368 (564)
T KOG1174|consen 299 TASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQML-----APYRL----- 368 (564)
T ss_pred chhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhc-----chhhH-----
Confidence 45566677778899999999999999999999999999999999999999999999999999999 44433
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCcc-----------------------------ccccchhHHHHHH
Q 008887 448 LIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPK-----------------------------SKAHYYDGLVVLA 498 (550)
Q Consensus 448 l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~-----------------------------~~~~~~~~~~~La 498 (550)
+.|..+-.+|...|+++||...-+.+++.- +.+.. -.+.+..+...+|
T Consensus 369 --~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~-~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~A 445 (564)
T KOG1174|consen 369 --EIYRGLFHSYLAQKRFKEANALANWTIRLF-QNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIA 445 (564)
T ss_pred --HHHHHHHHHHHhhchHHHHHHHHHHHHHHh-hcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHH
Confidence 266778888888888888887777776665 44430 0011335555555
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCc
Q 008887 499 SALCNVGRNAEAEKYLRLAAAHNPQY 524 (550)
Q Consensus 499 ~~~~~~g~~~eA~~~l~~al~~~p~~ 524 (550)
+++...|++++++..+++.+...|+.
T Consensus 446 EL~~~Eg~~~D~i~LLe~~L~~~~D~ 471 (564)
T KOG1174|consen 446 ELCQVEGPTKDIIKLLEKHLIIFPDV 471 (564)
T ss_pred HHHHhhCccchHHHHHHHHHhhcccc
Confidence 55555555555555555555555543
No 139
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.50 E-value=1.4e-06 Score=87.50 Aligned_cols=129 Identities=12% Similarity=0.091 Sum_probs=111.0
Q ss_pred HHHHHHHHcCCCCChHHHHHHHHhhCC-------C--------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCC
Q 008887 374 ALSVKFLSKGDKERPIPLLQLALNKEP-------D--------NINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGH 438 (550)
Q Consensus 374 ~la~~~~~~g~~~~A~~~~~~aL~~~p-------~--------~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~ 438 (550)
+.|..+++.|+|..|...|++|++.-. + -..++.+++.+|.+.++|.+|+++..++++. +
T Consensus 213 e~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~-----~ 287 (397)
T KOG0543|consen 213 ERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLEL-----D 287 (397)
T ss_pred HhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhc-----C
Confidence 788899999999999999999988321 1 1457889999999999999999999999999 8
Q ss_pred CCChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHH-HHHHHHH
Q 008887 439 PTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEA-EKYLRLA 517 (550)
Q Consensus 439 p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA-~~~l~~a 517 (550)
|.+. .+.|..|.++...|+|+.|+..|+++++.+ |.+. .+...+..|..+..++.+. .+.|.+.
T Consensus 288 ~~N~-------KALyRrG~A~l~~~e~~~A~~df~ka~k~~-P~Nk-------a~~~el~~l~~k~~~~~~kekk~y~~m 352 (397)
T KOG0543|consen 288 PNNV-------KALYRRGQALLALGEYDLARDDFQKALKLE-PSNK-------AARAELIKLKQKIREYEEKEKKMYANM 352 (397)
T ss_pred CCch-------hHHHHHHHHHHhhccHHHHHHHHHHHHHhC-CCcH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8877 388999999999999999999999999998 9888 8888888888777766555 6788888
Q ss_pred HHcCC
Q 008887 518 AAHNP 522 (550)
Q Consensus 518 l~~~p 522 (550)
+..-+
T Consensus 353 F~k~~ 357 (397)
T KOG0543|consen 353 FAKLA 357 (397)
T ss_pred hhccc
Confidence 76543
No 140
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.50 E-value=1.8e-06 Score=74.02 Aligned_cols=101 Identities=25% Similarity=0.261 Sum_probs=85.2
Q ss_pred hHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhH
Q 008887 369 PKELIALSVKFLSKGDKERPIPLLQLALNKEPDN---INALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAI 445 (550)
Q Consensus 369 ~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~---~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~ 445 (550)
|+.+++.|..+-..|+.++|+.+|++++....+. .+++..+|..+...|++++|+..+++++.. .|+++...
T Consensus 1 ~~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~-----~p~~~~~~ 75 (120)
T PF12688_consen 1 PRALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEE-----FPDDELNA 75 (120)
T ss_pred CchHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-----CCCccccH
Confidence 3567899999999999999999999999965443 578999999999999999999999999988 77754222
Q ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcC
Q 008887 446 DLLIVASQWSGVACIRQEKWEEGIAHLERIGNL 478 (550)
Q Consensus 446 ~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~ 478 (550)
.....++.++...|+.++|++.+-.++.-
T Consensus 76 ----~l~~f~Al~L~~~gr~~eAl~~~l~~la~ 104 (120)
T PF12688_consen 76 ----ALRVFLALALYNLGRPKEALEWLLEALAE 104 (120)
T ss_pred ----HHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 13446889999999999999999877654
No 141
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.48 E-value=8.3e-06 Score=87.39 Aligned_cols=152 Identities=14% Similarity=0.094 Sum_probs=112.8
Q ss_pred HHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHHhh--------------
Q 008887 374 ALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKG-----LLEEAVEYLECAISKLF-------------- 434 (550)
Q Consensus 374 ~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g-----~~~eA~~~~~~al~l~~-------------- 434 (550)
..|..++..|++++|...|+..++.+|++...+..+..+..... +.+.-.+.|++......
T Consensus 43 ~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~ 122 (517)
T PF12569_consen 43 KRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQLSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLE 122 (517)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHhCccccchhHhhcccCC
Confidence 78999999999999999999999999999999988888873222 22322333322211100
Q ss_pred ----------------hcC--------------------------------------CCC---ChhhHHHHHHHHHHHHH
Q 008887 435 ----------------LAG--------------------------------------HPT---EPEAIDLLIVASQWSGV 457 (550)
Q Consensus 435 ----------------~~~--------------------------------------~p~---~~~~~~~l~~a~~~lg~ 457 (550)
..| ... ..+....+..+++.++.
T Consensus 123 g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAq 202 (517)
T PF12569_consen 123 GDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQ 202 (517)
T ss_pred HHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHH
Confidence 000 000 01112222337788999
Q ss_pred HHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHHHHHHHh
Q 008887 458 ACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQLEN 533 (550)
Q Consensus 458 ~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~l~~ 533 (550)
.|...|++++|+++.+++|+.. |+.+ +.+...|++|...|++++|.+.++.+..++..+.-.-..+.+
T Consensus 203 hyd~~g~~~~Al~~Id~aI~ht-Pt~~-------ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aK 270 (517)
T PF12569_consen 203 HYDYLGDYEKALEYIDKAIEHT-PTLV-------ELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAK 270 (517)
T ss_pred HHHHhCCHHHHHHHHHHHHhcC-CCcH-------HHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHH
Confidence 9999999999999999999998 9888 999999999999999999999999999999887654444433
No 142
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.47 E-value=2.3e-07 Score=73.41 Aligned_cols=74 Identities=19% Similarity=0.166 Sum_probs=59.7
Q ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcC
Q 008887 400 PDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNL 478 (550)
Q Consensus 400 p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~ 478 (550)
|+-+.++.++|.+|...|++++|+++|++++++.... .+ ....+..+++++|.++...|++++|++++++++++
T Consensus 2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~-~~----~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQL-GD----DHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-TT----HHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH-CC----CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 3446789999999999999999999999999983222 21 22233458999999999999999999999999875
No 143
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=98.46 E-value=4.5e-07 Score=88.35 Aligned_cols=108 Identities=24% Similarity=0.272 Sum_probs=97.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCcc
Q 008887 406 LILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPK 485 (550)
Q Consensus 406 ~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~ 485 (550)
....|+.|+++|+|++|+.||.+++.. +|.++ . .+.+.+.+|++++++..|...|..++.++ ..
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ia~-----~P~Np-V------~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~--- 163 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAIAV-----YPHNP-V------YHINRALAYLKQKSFAQAEEDCEAAIALD-KL--- 163 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhhcc-----CCCCc-c------chhhHHHHHHHHHHHHHHHHhHHHHHHhh-HH---
Confidence 566899999999999999999999999 88777 2 67789999999999999999999999997 53
Q ss_pred ccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHHHHHHHh
Q 008887 486 SKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQLEN 533 (550)
Q Consensus 486 ~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~l~~ 533 (550)
+..+|...+.+-..+|+..||.+.++.+|++.|+..+..+.+..
T Consensus 164 ----Y~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~LEP~~~ELkK~~a~ 207 (536)
T KOG4648|consen 164 ----YVKAYSRRMQARESLGNNMEAKKDCETVLALEPKNIELKKSLAR 207 (536)
T ss_pred ----HHHHHHHHHHHHHHHhhHHHHHHhHHHHHhhCcccHHHHHHHHH
Confidence 44899999999999999999999999999999999998887765
No 144
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.46 E-value=2.6e-06 Score=87.99 Aligned_cols=124 Identities=18% Similarity=0.218 Sum_probs=106.4
Q ss_pred HHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHH
Q 008887 374 ALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQ 453 (550)
Q Consensus 374 ~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~ 453 (550)
.+-..+...++++.|++.+++..+.+|+ +...++.++...++..+|++.+.+++.. +|.+. + ...
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~-----~p~d~---~----LL~ 238 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKE-----NPQDS---E----LLN 238 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHh-----CCCCH---H----HHH
Confidence 4555666678999999999999888865 6677999999999999999999999988 77664 2 444
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 008887 454 WSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAH 520 (550)
Q Consensus 454 ~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~ 520 (550)
..+..+...++++.|++..+++++.. |.+- +.|+.||.+|.+.|++++|...++.+--.
T Consensus 239 ~Qa~fLl~k~~~~lAL~iAk~av~ls-P~~f-------~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~ 297 (395)
T PF09295_consen 239 LQAEFLLSKKKYELALEIAKKAVELS-PSEF-------ETWYQLAECYIQLGDFENALLALNSCPML 297 (395)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhC-chhH-------HHHHHHHHHHHhcCCHHHHHHHHhcCcCC
Confidence 58999999999999999999999998 8777 99999999999999999999887755443
No 145
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.45 E-value=3.1e-07 Score=72.60 Aligned_cols=70 Identities=14% Similarity=0.125 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 008887 450 VASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAH 520 (550)
Q Consensus 450 ~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~ 520 (550)
.++.++|.+|..+|++++|+++|++++++. ...+.++...+.++.++|.++...|++++|++++++++++
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIE-EQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHH-HHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 478899999999999999999999999884 4445455667899999999999999999999999999876
No 146
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.45 E-value=6.4e-06 Score=71.89 Aligned_cols=113 Identities=23% Similarity=0.194 Sum_probs=97.4
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCC
Q 008887 402 NINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEP 481 (550)
Q Consensus 402 ~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p 481 (550)
.+..++.-|...++.|+|++|++.|+..... .|..+... .+...++.+|++.|++++|+..+++.++++ |
T Consensus 9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~r-----yP~g~ya~----qAqL~l~yayy~~~~y~~A~a~~~rFirLh-P 78 (142)
T PF13512_consen 9 SPQELYQEAQEALQKGNYEEAIKQLEALDTR-----YPFGEYAE----QAQLDLAYAYYKQGDYEEAIAAYDRFIRLH-P 78 (142)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc-----CCCCcccH----HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-C
Confidence 4577899999999999999999999999888 77666333 366789999999999999999999999998 8
Q ss_pred CCccccccchhHHHHHHHHHHhcCC---------------HHHHHHHHHHHHHcCCCcHHHH
Q 008887 482 EEPKSKAHYYDGLVVLASALCNVGR---------------NAEAEKYLRLAAAHNPQYNELL 528 (550)
Q Consensus 482 ~~~~~~~~~~~~~~~La~~~~~~g~---------------~~eA~~~l~~al~~~p~~~~~~ 528 (550)
+.+ ....+++..|.++.++.+ ..+|...|+++++..|+..-+.
T Consensus 79 ~hp----~vdYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya~ 136 (142)
T PF13512_consen 79 THP----NVDYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYAA 136 (142)
T ss_pred CCC----CccHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhHH
Confidence 877 555799999999998877 7889999999999999876543
No 147
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.44 E-value=9.7e-07 Score=88.22 Aligned_cols=146 Identities=18% Similarity=0.171 Sum_probs=106.3
Q ss_pred HHHHHHHHcCCCCChHHHHHHHHhhC--CC----ChHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHhhhcCCCCChhhHH
Q 008887 374 ALSVKFLSKGDKERPIPLLQLALNKE--PD----NINALILMGQTQLQK-GLLEEAVEYLECAISKLFLAGHPTEPEAID 446 (550)
Q Consensus 374 ~la~~~~~~g~~~~A~~~~~~aL~~~--p~----~~~a~~~lg~~~~~~-g~~~eA~~~~~~al~l~~~~~~p~~~~~~~ 446 (550)
..+...+..+++++|+++|++|+... -+ -+.++..+|.+|... |++++|+++|++|++.....+.+ .
T Consensus 79 ~~Aa~~~k~~~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~------~ 152 (282)
T PF14938_consen 79 EEAANCYKKGDPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSP------H 152 (282)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-H------H
T ss_pred HHHHHHHHhhCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCh------h
Confidence 34444455559999999999999854 22 256788999999999 99999999999999995332211 1
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHH
Q 008887 447 LLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNE 526 (550)
Q Consensus 447 ~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~ 526 (550)
........+|.++.+.|+|++|++.|+++.... -+....+...-..+...+.|+...||...|.+.+++....+|.+..
T Consensus 153 ~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~-l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~ 231 (282)
T PF14938_consen 153 SAAECLLKAADLYARLGRYEEAIEIYEEVAKKC-LENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFAS 231 (282)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTC-CCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTT
T ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh-hcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCC
Confidence 122366789999999999999999999988763 2222222223345667788999999999999999999999987643
No 148
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.44 E-value=1.1e-06 Score=80.73 Aligned_cols=138 Identities=22% Similarity=0.218 Sum_probs=109.7
Q ss_pred HHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHH
Q 008887 371 ELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIV 450 (550)
Q Consensus 371 ~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~ 450 (550)
-+++.|..|-..|-.+-|.-.|.++|.++|+-+++.+.+|..+...|+|+.|.+.|...+++ +|.+. .
T Consensus 67 l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~EL-----Dp~y~-Y------ 134 (297)
T COG4785 67 LLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLEL-----DPTYN-Y------ 134 (297)
T ss_pred HHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhcc-----CCcch-H------
Confidence 34566777777777777778888888888888888888888888888888888888888888 77775 3
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccc------------------------------------------
Q 008887 451 ASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKA------------------------------------------ 488 (550)
Q Consensus 451 a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~------------------------------------------ 488 (550)
+..|.|..++.-|++.-|.+.+.+-.+.+ |+||--..
T Consensus 135 a~lNRgi~~YY~gR~~LAq~d~~~fYQ~D-~~DPfR~LWLYl~E~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~yLgki 213 (297)
T COG4785 135 AHLNRGIALYYGGRYKLAQDDLLAFYQDD-PNDPFRSLWLYLNEQKLDPKQAKTNLKQRAEKSDKEQWGWNIVEFYLGKI 213 (297)
T ss_pred HHhccceeeeecCchHhhHHHHHHHHhcC-CCChHHHHHHHHHHhhCCHHHHHHHHHHHHHhccHhhhhHHHHHHHHhhc
Confidence 66778888888888888888888777776 66652100
Q ss_pred ---------------------cchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 008887 489 ---------------------HYYDGLVVLASALCNVGRNAEAEKYLRLAAAHN 521 (550)
Q Consensus 489 ---------------------~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~ 521 (550)
+..++++.+|..|...|+.++|...|+-++..+
T Consensus 214 S~e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiann 267 (297)
T COG4785 214 SEETLMERLKADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANN 267 (297)
T ss_pred cHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence 157889999999999999999999999888765
No 149
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.43 E-value=3.2e-06 Score=71.50 Aligned_cols=101 Identities=21% Similarity=0.132 Sum_probs=88.4
Q ss_pred HHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHH
Q 008887 371 ELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIV 450 (550)
Q Consensus 371 ~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~ 450 (550)
++-..|......|+.+.|++.|.+++...|+.+.+|++.++++..+|+.++|++.+++++++. ++... .-+.
T Consensus 45 ~LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLa----g~~tr----tacq 116 (175)
T KOG4555|consen 45 ELELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELA----GDQTR----TACQ 116 (175)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhc----Cccch----HHHH
Confidence 344677788899999999999999999999999999999999999999999999999999994 33322 2223
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHhcCC
Q 008887 451 ASQWSGVACIRQEKWEEGIAHLERIGNLK 479 (550)
Q Consensus 451 a~~~lg~~~~~~g~~~eA~~~~~~al~~~ 479 (550)
++...|..|..+|+.++|...|+.+.++.
T Consensus 117 a~vQRg~lyRl~g~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 117 AFVQRGLLYRLLGNDDAARADFEAAAQLG 145 (175)
T ss_pred HHHHHHHHHHHhCchHHHHHhHHHHHHhC
Confidence 67779999999999999999999999987
No 150
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.42 E-value=4.7e-07 Score=69.42 Aligned_cols=67 Identities=25% Similarity=0.424 Sum_probs=60.2
Q ss_pred HHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHHHHHHHh
Q 008887 459 CIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQLEN 533 (550)
Q Consensus 459 ~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~l~~ 533 (550)
+++.|++++|++.|+++++.. |++. .+++.+|.||.+.|++++|.+.+++++..+|++..++..+.+
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~-p~~~-------~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~ 67 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRN-PDNP-------EARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQ 67 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHT-TTSH-------HHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred ChhccCHHHHHHHHHHHHHHC-CCCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence 357899999999999999998 9888 999999999999999999999999999999999877766554
No 151
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.40 E-value=3.4e-06 Score=82.03 Aligned_cols=105 Identities=17% Similarity=0.190 Sum_probs=94.5
Q ss_pred ChHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHhhhcCCCCChhh
Q 008887 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGL---LEEAVEYLECAISKLFLAGHPTEPEA 444 (550)
Q Consensus 368 ~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~---~~eA~~~~~~al~l~~~~~~p~~~~~ 444 (550)
+++.+.-+|..|+..|+++.|...|.+|+++.|++++.+..+|.+++...+ ..++.+.+++++.. +|.+.
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~-----D~~~i-- 227 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALAL-----DPANI-- 227 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhc-----CCccH--
Confidence 777888999999999999999999999999999999999999999987654 45899999999999 88887
Q ss_pred HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCc
Q 008887 445 IDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEP 484 (550)
Q Consensus 445 ~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~ 484 (550)
.+.+.+|..++++|+|++|+..++..++..+++++
T Consensus 228 -----ral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~ 262 (287)
T COG4235 228 -----RALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDP 262 (287)
T ss_pred -----HHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCc
Confidence 37788999999999999999999999999844444
No 152
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.38 E-value=2.2e-05 Score=74.82 Aligned_cols=156 Identities=19% Similarity=0.202 Sum_probs=124.7
Q ss_pred CChHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChh
Q 008887 367 LTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDN---INALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPE 443 (550)
Q Consensus 367 l~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~---~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~ 443 (550)
..++.+++.|...++.|++++|++.|+++...+|.. ..+...++.++++.+++++|+...++-+++ +|++++
T Consensus 32 ~p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~l-----yP~~~n 106 (254)
T COG4105 32 LPASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRL-----YPTHPN 106 (254)
T ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-----CCCCCC
Confidence 578899999999999999999999999999988765 478889999999999999999999999999 999885
Q ss_pred hHHHHHHHHHHHHHHHH--------HhcCHHHHHHHHHHHhcCCCCCCccccc----------cchhHHHHHHHHHHhcC
Q 008887 444 AIDLLIVASQWSGVACI--------RQEKWEEGIAHLERIGNLKEPEEPKSKA----------HYYDGLVVLASALCNVG 505 (550)
Q Consensus 444 ~~~~l~~a~~~lg~~~~--------~~g~~~eA~~~~~~al~~~~p~~~~~~~----------~~~~~~~~La~~~~~~g 505 (550)
.. .++|-.|.++. .+....+|+..|++.++.. |+..-... ..+.--...|+.|.+.|
T Consensus 107 ~d----Y~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ry-PnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~ 181 (254)
T COG4105 107 AD----YAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRY-PNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRG 181 (254)
T ss_pred hh----HHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHC-CCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 43 24556677665 3445568888999999987 77642211 13344557788899999
Q ss_pred CHHHHHHHHHHHHHcCCCcHHHHHHHH
Q 008887 506 RNAEAEKYLRLAAAHNPQYNELLEQLE 532 (550)
Q Consensus 506 ~~~eA~~~l~~al~~~p~~~~~~~~l~ 532 (550)
.+..|..-++++++.-|+.......|.
T Consensus 182 ~~~AA~nR~~~v~e~y~~t~~~~eaL~ 208 (254)
T COG4105 182 AYVAAINRFEEVLENYPDTSAVREALA 208 (254)
T ss_pred ChHHHHHHHHHHHhccccccchHHHHH
Confidence 999999999999998777665444443
No 153
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.38 E-value=5.8e-06 Score=87.01 Aligned_cols=156 Identities=20% Similarity=0.123 Sum_probs=128.2
Q ss_pred ChHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHH
Q 008887 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDL 447 (550)
Q Consensus 368 ~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~ 447 (550)
+.--+..+|..+...++|++|+++|+.|++.+|+|...+..++....+.++++.....-.+.+++ .|+..
T Consensus 74 S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql-----~~~~r----- 143 (700)
T KOG1156|consen 74 SHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQL-----RPSQR----- 143 (700)
T ss_pred cchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHh-----hhhhH-----
Confidence 33344589999999999999999999999999999999999999999999999999998888888 55554
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccc-----------------------------------cchh
Q 008887 448 LIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKA-----------------------------------HYYD 492 (550)
Q Consensus 448 l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~-----------------------------------~~~~ 492 (550)
..|..+++++...|++..|.+..+...+.. ...+.... +...
T Consensus 144 --a~w~~~Avs~~L~g~y~~A~~il~ef~~t~-~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla 220 (700)
T KOG1156|consen 144 --ASWIGFAVAQHLLGEYKMALEILEEFEKTQ-NTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLA 220 (700)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-ccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHH
Confidence 267789999999999999999888776654 21111111 1334
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHHHHHHHhhHH
Q 008887 493 GLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQLENNDE 536 (550)
Q Consensus 493 ~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~l~~~~~ 536 (550)
.....|..+.++|+.++|...|+..+..+|++-.+...+.....
T Consensus 221 ~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lg 264 (700)
T KOG1156|consen 221 FEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALG 264 (700)
T ss_pred HhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHH
Confidence 45567888999999999999999999999999999888877654
No 154
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=98.37 E-value=7e-06 Score=86.31 Aligned_cols=142 Identities=18% Similarity=0.083 Sum_probs=128.2
Q ss_pred ChHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHH
Q 008887 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDL 447 (550)
Q Consensus 368 ~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~ 447 (550)
+++..+.-+.....+++.++|+.+++++|+.+|++...|..+|+++.+.++.+.|.+.|...++. .|... .
T Consensus 650 TeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-----cP~~i-p--- 720 (913)
T KOG0495|consen 650 TERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-----CPNSI-P--- 720 (913)
T ss_pred cchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-----CCCCc-h---
Confidence 45566677788889999999999999999999999999999999999999999999999999999 78766 2
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHH
Q 008887 448 LIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNEL 527 (550)
Q Consensus 448 l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~ 527 (550)
.|..++..-.+.|+.-.|...++++.-.+ |.+. ..|...-+.-.+.|+.++|.....++|+-.|+....
T Consensus 721 ---LWllLakleEk~~~~~rAR~ildrarlkN-Pk~~-------~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~L 789 (913)
T KOG0495|consen 721 ---LWLLLAKLEEKDGQLVRARSILDRARLKN-PKNA-------LLWLESIRMELRAGNKEQAELLMAKALQECPSSGLL 789 (913)
T ss_pred ---HHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcc-------hhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchh
Confidence 67779999999999999999999999887 9888 888888899999999999999999999999998876
Q ss_pred HH
Q 008887 528 LE 529 (550)
Q Consensus 528 ~~ 529 (550)
|.
T Consensus 790 Wa 791 (913)
T KOG0495|consen 790 WA 791 (913)
T ss_pred HH
Confidence 64
No 155
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.37 E-value=1.5e-06 Score=86.89 Aligned_cols=142 Identities=19% Similarity=0.087 Sum_probs=105.4
Q ss_pred HHH-HHHHHHHHcCCCCChHHHHHHHHhhCC-----C-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChh
Q 008887 371 ELI-ALSVKFLSKGDKERPIPLLQLALNKEP-----D-NINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPE 443 (550)
Q Consensus 371 ~l~-~la~~~~~~g~~~~A~~~~~~aL~~~p-----~-~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~ 443 (550)
+++ ..|..|...|++++|.+.|.++.+..- . ...++...+.+|.+. ++++|+++|++|+++....|++...
T Consensus 36 ~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~a- 113 (282)
T PF14938_consen 36 DLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFSQA- 113 (282)
T ss_dssp HHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HHHH-
T ss_pred HHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHHHH-
Confidence 444 778889999999999999999977431 1 234556666666555 9999999999999996544443333
Q ss_pred hHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 008887 444 AIDLLIVASQWSGVACIRQ-EKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHN 521 (550)
Q Consensus 444 ~~~~l~~a~~~lg~~~~~~-g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~ 521 (550)
...+..+|.+|... |++++|+++|++|++.. ..+. ........+..+|.++.+.|+|++|++.|+++....
T Consensus 114 -----A~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y-~~e~-~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~ 185 (282)
T PF14938_consen 114 -----AKCLKELAEIYEEQLGDYEKAIEYYQKAAELY-EQEG-SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKC 185 (282)
T ss_dssp -----HHHHHHHHHHHCCTT--HHHHHHHHHHHHHHH-HHTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTC
T ss_pred -----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HHCC-ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh
Confidence 23777899999999 99999999999999985 2222 223345788899999999999999999999998754
No 156
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.36 E-value=2.2e-06 Score=66.69 Aligned_cols=68 Identities=28% Similarity=0.350 Sum_probs=62.6
Q ss_pred HHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHHHHHH
Q 008887 456 GVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQL 531 (550)
Q Consensus 456 g~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~l 531 (550)
..+|...+++++|+++++++++.+ |+++ ..+..+|.++.++|++++|.+.++++++.+|++.......
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~-p~~~-------~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~ 69 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELD-PDDP-------ELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALR 69 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhC-cccc-------hhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHH
Confidence 567889999999999999999998 9888 9999999999999999999999999999999988766544
No 157
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.35 E-value=8.7e-06 Score=77.16 Aligned_cols=111 Identities=26% Similarity=0.258 Sum_probs=89.2
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCC
Q 008887 402 NINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEP 481 (550)
Q Consensus 402 ~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p 481 (550)
.+..++..|..++..|+|++|++.|++.+.. .|..+... .+.+.+|.++++.|++++|+..+++.++.. |
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~-----~P~s~~a~----~A~l~la~a~y~~~~y~~A~~~~~~fi~~y-P 73 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDR-----YPNSPYAP----QAQLMLAYAYYKQGDYEEAIAAYERFIKLY-P 73 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH------TTSTTHH----HHHHHHHHHHHHTT-HHHHHHHHHHHHHH--T
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-----CCCChHHH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-C
Confidence 5678999999999999999999999999999 78766443 366789999999999999999999999998 8
Q ss_pred CCccccccchhHHHHHHHHHHhcC-----------CHHHHHHHHHHHHHcCCCcHH
Q 008887 482 EEPKSKAHYYDGLVVLASALCNVG-----------RNAEAEKYLRLAAAHNPQYNE 526 (550)
Q Consensus 482 ~~~~~~~~~~~~~~~La~~~~~~g-----------~~~eA~~~l~~al~~~p~~~~ 526 (550)
+.+ ....+++.+|.++.... ...+|...++..++..|+..-
T Consensus 74 ~~~----~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y 125 (203)
T PF13525_consen 74 NSP----KADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEY 125 (203)
T ss_dssp T-T----THHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTT
T ss_pred CCc----chhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchH
Confidence 776 55578999999976553 345899999999999998754
No 158
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.34 E-value=2.6e-06 Score=90.71 Aligned_cols=138 Identities=19% Similarity=0.203 Sum_probs=82.6
Q ss_pred HHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHH----------------------------HHcCCHHHHHH
Q 008887 373 IALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQ----------------------------LQKGLLEEAVE 424 (550)
Q Consensus 373 ~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~----------------------------~~~g~~~eA~~ 424 (550)
......|...|+.++|.....+-++ .|.++..|..+|.+. ...++|+++.+
T Consensus 428 ~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~LGDv~~d~s~yEkawElsn~~sarA~r~~~~~~~~~~~fs~~~~ 506 (777)
T KOG1128|consen 428 DPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYCLLGDVLHDPSLYEKAWELSNYISARAQRSLALLILSNKDFSEADK 506 (777)
T ss_pred HHHHHHHHHhcccchHHHHHHHHhc-CCCcchhHHHhhhhccChHHHHHHHHHhhhhhHHHHHhhccccccchhHHHHHH
Confidence 3666788888888888888888877 444444444444333 33455555666
Q ss_pred HHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhc
Q 008887 425 YLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNV 504 (550)
Q Consensus 425 ~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~ 504 (550)
+++..+++ +|... ..|+++|.|..+.+++..|.++|.+++..+ |+.. ++|.+++.+|.+.
T Consensus 507 hle~sl~~-----nplq~-------~~wf~~G~~ALqlek~q~av~aF~rcvtL~-Pd~~-------eaWnNls~ayi~~ 566 (777)
T KOG1128|consen 507 HLERSLEI-----NPLQL-------GTWFGLGCAALQLEKEQAAVKAFHRCVTLE-PDNA-------EAWNNLSTAYIRL 566 (777)
T ss_pred HHHHHhhc-----Cccch-------hHHHhccHHHHHHhhhHHHHHHHHHHhhcC-CCch-------hhhhhhhHHHHHH
Confidence 66665555 44443 155566666666666666666666666665 5544 6666666666666
Q ss_pred CCHHHHHHHHHHHHHcCCCcHHHHHHH
Q 008887 505 GRNAEAEKYLRLAAAHNPQYNELLEQL 531 (550)
Q Consensus 505 g~~~eA~~~l~~al~~~p~~~~~~~~l 531 (550)
|+..+|...++++++-+-++-..|.+.
T Consensus 567 ~~k~ra~~~l~EAlKcn~~~w~iWENy 593 (777)
T KOG1128|consen 567 KKKKRAFRKLKEALKCNYQHWQIWENY 593 (777)
T ss_pred hhhHHHHHHHHHHhhcCCCCCeeeech
Confidence 666666666666666554444444443
No 159
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=98.33 E-value=3.2e-06 Score=82.55 Aligned_cols=99 Identities=20% Similarity=0.109 Sum_probs=89.7
Q ss_pred HHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHH
Q 008887 373 IALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVAS 452 (550)
Q Consensus 373 ~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~ 452 (550)
-+.|..|+.+|+|++|+.+|.+++..+|.++-.+.+.+.+|++.++|..|....+.|+.+ +. .+..+|
T Consensus 101 KE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaL-----------d~-~Y~KAY 168 (536)
T KOG4648|consen 101 KERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIAL-----------DK-LYVKAY 168 (536)
T ss_pred HHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHh-----------hH-HHHHHH
Confidence 378999999999999999999999999999999999999999999999999999999988 11 122488
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCc
Q 008887 453 QWSGVACIRQEKWEEGIAHLERIGNLKEPEEP 484 (550)
Q Consensus 453 ~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~ 484 (550)
...|.+-..+|+.+||.+.++.++++. |+..
T Consensus 169 SRR~~AR~~Lg~~~EAKkD~E~vL~LE-P~~~ 199 (536)
T KOG4648|consen 169 SRRMQARESLGNNMEAKKDCETVLALE-PKNI 199 (536)
T ss_pred HHHHHHHHHHhhHHHHHHhHHHHHhhC-cccH
Confidence 889999999999999999999999997 8765
No 160
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=98.33 E-value=4.4e-07 Score=90.34 Aligned_cols=140 Identities=17% Similarity=0.171 Sum_probs=114.8
Q ss_pred HHHHHHHHcCCCCChHHHHHHHHhhCCC------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHH
Q 008887 374 ALSVKFLSKGDKERPIPLLQLALNKEPD------NINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDL 447 (550)
Q Consensus 374 ~la~~~~~~g~~~~A~~~~~~aL~~~p~------~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~ 447 (550)
++|..|+-.|+|++|+..-+.-|.+..+ .-+++.++|+++.-.|+++.|.++|++++.++.+.++.... .
T Consensus 200 nLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vE-A--- 275 (639)
T KOG1130|consen 200 NLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVE-A--- 275 (639)
T ss_pred ccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHH-H---
Confidence 6777889999999999988888775432 34688999999999999999999999999887666655544 2
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 008887 448 LIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHN 521 (550)
Q Consensus 448 l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~ 521 (550)
...|.+|..|.-..++++|+.++++-+.+ ...-.+......++.-||.++...|..++|..+.+..+++.
T Consensus 276 --QscYSLgNtytll~e~~kAI~Yh~rHLaI--AqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~s 345 (639)
T KOG1130|consen 276 --QSCYSLGNTYTLLKEVQKAITYHQRHLAI--AQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRSS 345 (639)
T ss_pred --HHHHHhhhHHHHHHHHHHHHHHHHHHHHH--HHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 26788999999999999999999998877 33344445566889999999999999999998888766543
No 161
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.33 E-value=2.2e-06 Score=88.01 Aligned_cols=66 Identities=18% Similarity=0.245 Sum_probs=62.9
Q ss_pred CChHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHH---HHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 008887 367 LTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINA---LILMGQTQLQKGLLEEAVEYLECAISK 432 (550)
Q Consensus 367 l~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a---~~~lg~~~~~~g~~~eA~~~~~~al~l 432 (550)
-++++++++|..++..|+|++|+..|+++++++|++.++ |+++|.+|.++|++++|++++++|+++
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 488899999999999999999999999999999999865 999999999999999999999999998
No 162
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.32 E-value=2.5e-05 Score=76.06 Aligned_cols=112 Identities=16% Similarity=0.106 Sum_probs=94.0
Q ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCC
Q 008887 401 DNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKE 480 (550)
Q Consensus 401 ~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~ 480 (550)
..+..++..|..+...|++++|++.|++++.. .|..+... .+.+++|.++++.+++++|+..+++.++..
T Consensus 30 ~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~-----yP~s~~a~----~a~l~la~ayy~~~~y~~A~~~~e~fi~~~- 99 (243)
T PRK10866 30 NPPSEIYATAQQKLQDGNWKQAITQLEALDNR-----YPFGPYSQ----QVQLDLIYAYYKNADLPLAQAAIDRFIRLN- 99 (243)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCChHHH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-
Confidence 46777889999999999999999999999999 77766332 356789999999999999999999999998
Q ss_pred CCCccccccchhHHHHHHHHHHhcC---------------C---HHHHHHHHHHHHHcCCCcHH
Q 008887 481 PEEPKSKAHYYDGLVVLASALCNVG---------------R---NAEAEKYLRLAAAHNPQYNE 526 (550)
Q Consensus 481 p~~~~~~~~~~~~~~~La~~~~~~g---------------~---~~eA~~~l~~al~~~p~~~~ 526 (550)
|+++ ....+++.+|.++...+ | ..+|.+.+++.++..|+..-
T Consensus 100 P~~~----~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~y 159 (243)
T PRK10866 100 PTHP----NIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQY 159 (243)
T ss_pred cCCC----chHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChh
Confidence 8877 55689999999875554 1 35688999999999998754
No 163
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.32 E-value=2.4e-06 Score=93.47 Aligned_cols=130 Identities=16% Similarity=0.110 Sum_probs=91.9
Q ss_pred CCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHH----------------
Q 008887 385 KERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLL---------------- 448 (550)
Q Consensus 385 ~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l---------------- 448 (550)
.+.|...|-+++++++..+.++..+|.+|..-.|...|.++|++|.++ ++++.+.....
T Consensus 474 ~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeL-----Datdaeaaaa~adtyae~~~we~a~~I 548 (1238)
T KOG1127|consen 474 SALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFEL-----DATDAEAAAASADTYAEESTWEEAFEI 548 (1238)
T ss_pred HHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-----CchhhhhHHHHHHHhhccccHHHHHHH
Confidence 444555555555555555555555555555555555555555555555 44333221111
Q ss_pred -------------HHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHH
Q 008887 449 -------------IVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLR 515 (550)
Q Consensus 449 -------------~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~ 515 (550)
...|..+|..|.+.++..+|+..|+.+++.+ |.|. ..|..+|++|...|++.-|.+.+.
T Consensus 549 ~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~-------n~W~gLGeAY~~sGry~~AlKvF~ 620 (1238)
T KOG1127|consen 549 CLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDY-------NLWLGLGEAYPESGRYSHALKVFT 620 (1238)
T ss_pred HHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhH-------HHHHHHHHHHHhcCceehHHHhhh
Confidence 1245568888999999999999999999998 9888 999999999999999999999999
Q ss_pred HHHHcCCCcHHH
Q 008887 516 LAAAHNPQYNEL 527 (550)
Q Consensus 516 ~al~~~p~~~~~ 527 (550)
++..++|.+.-.
T Consensus 621 kAs~LrP~s~y~ 632 (1238)
T KOG1127|consen 621 KASLLRPLSKYG 632 (1238)
T ss_pred hhHhcCcHhHHH
Confidence 999999987653
No 164
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.32 E-value=2.8e-06 Score=90.92 Aligned_cols=106 Identities=17% Similarity=0.193 Sum_probs=97.3
Q ss_pred CCChHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHH--HHHHHHHHhhhcCCCCChh
Q 008887 366 NLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVE--YLECAISKLFLAGHPTEPE 443 (550)
Q Consensus 366 ~l~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~--~~~~al~l~~~~~~p~~~~ 443 (550)
.+.+..++..|..+..+|+.++|.+.|..|+..+|+++.+...+|.++.+.|+..-|.+ .+..++++ +|.++
T Consensus 681 ~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~-----dp~n~- 754 (799)
T KOG4162|consen 681 PLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRL-----DPLNH- 754 (799)
T ss_pred hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhh-----CCCCH-
Confidence 34555567888999999999999999999999999999999999999999999988888 99999999 99988
Q ss_pred hHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCc
Q 008887 444 AIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEP 484 (550)
Q Consensus 444 ~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~ 484 (550)
++|+++|.++.++|+.++|.++|+-+++++ +.+|
T Consensus 755 ------eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe-~S~P 788 (799)
T KOG4162|consen 755 ------EAWYYLGEVFKKLGDSKQAAECFQAALQLE-ESNP 788 (799)
T ss_pred ------HHHHHHHHHHHHccchHHHHHHHHHHHhhc-cCCC
Confidence 499999999999999999999999999997 7666
No 165
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.28 E-value=1.3e-05 Score=79.95 Aligned_cols=143 Identities=20% Similarity=0.203 Sum_probs=111.6
Q ss_pred HHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHhhhcCCCCChhhHHH
Q 008887 370 KELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKG--LLEEAVEYLECAISKLFLAGHPTEPEAIDL 447 (550)
Q Consensus 370 ~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g--~~~eA~~~~~~al~l~~~~~~p~~~~~~~~ 447 (550)
+...-....++..++++.|.+.++.+-+.+.+..-+....+++.+..| .+.+|...|++..+. .+..+
T Consensus 132 E~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-----~~~t~----- 201 (290)
T PF04733_consen 132 ELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-----FGSTP----- 201 (290)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-----S--SH-----
T ss_pred cHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-----cCCCH-----
Confidence 344456678999999999999999998888887777777777777777 588999999997555 33333
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCCcHH
Q 008887 448 LIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRN-AEAEKYLRLAAAHNPQYNE 526 (550)
Q Consensus 448 l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~-~eA~~~l~~al~~~p~~~~ 526 (550)
...+.++.|+..+|++++|.+.++++++.+ |+++ +++.+++.+....|+. +.+.+++.+....+|+++-
T Consensus 202 --~~lng~A~~~l~~~~~~eAe~~L~~al~~~-~~~~-------d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~~ 271 (290)
T PF04733_consen 202 --KLLNGLAVCHLQLGHYEEAEELLEEALEKD-PNDP-------DTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNHPL 271 (290)
T ss_dssp --HHHHHHHHHHHHCT-HHHHHHHHHHHCCC--CCHH-------HHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSHH
T ss_pred --HHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-cCCH-------HHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCChH
Confidence 256689999999999999999999999997 8877 8999999999999988 6677788888889999886
Q ss_pred HHHHHH
Q 008887 527 LLEQLE 532 (550)
Q Consensus 527 ~~~~l~ 532 (550)
....-+
T Consensus 272 ~~~~~~ 277 (290)
T PF04733_consen 272 VKDLAE 277 (290)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 554433
No 166
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.28 E-value=1.3e-05 Score=89.87 Aligned_cols=149 Identities=14% Similarity=0.146 Sum_probs=108.8
Q ss_pred HHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHH
Q 008887 370 KELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLI 449 (550)
Q Consensus 370 ~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~ 449 (550)
.+++.+|.+|-..|+.++|.+.|+++++.+|+++.+++++|..|... +.++|++++.+|++...... . ...
T Consensus 117 ~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i~~k--q---~~~--- 187 (906)
T PRK14720 117 LALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRFIKKK--Q---YVG--- 187 (906)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHhhh--c---chH---
Confidence 47789999999999999999999999999999999999999999999 99999999999988731000 0 000
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHHHH
Q 008887 450 VASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLE 529 (550)
Q Consensus 450 ~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~ 529 (550)
.--++...|.....+.+.=....++..... . .......+.-+-.+|.+.+++++++..++.+++++|.+..++.
T Consensus 188 ~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~--~----~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~ 261 (906)
T PRK14720 188 IEEIWSKLVHYNSDDFDFFLRIERKVLGHR--E----FTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKARE 261 (906)
T ss_pred HHHHHHHHHhcCcccchHHHHHHHHHHhhh--c----cchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHH
Confidence 011123333333344444444444433321 0 1123456667778999999999999999999999999988877
Q ss_pred HHHh
Q 008887 530 QLEN 533 (550)
Q Consensus 530 ~l~~ 533 (550)
.+..
T Consensus 262 ~l~~ 265 (906)
T PRK14720 262 ELIR 265 (906)
T ss_pred HHHH
Confidence 6654
No 167
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.24 E-value=9.9e-06 Score=72.40 Aligned_cols=94 Identities=21% Similarity=0.263 Sum_probs=77.3
Q ss_pred HHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHH
Q 008887 370 KELIALSVKFLSKGDKERPIPLLQLALNKEPDN---INALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAID 446 (550)
Q Consensus 370 ~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~---~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~ 446 (550)
...+.+|..++..|++++|.+.|++++...++. ..+...+|.++...|++++|+..++..- - .+..+
T Consensus 49 ~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~~-~-----~~~~~---- 118 (145)
T PF09976_consen 49 LAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQIP-D-----EAFKA---- 118 (145)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhcc-C-----cchHH----
Confidence 355689999999999999999999999987665 4578899999999999999999986631 1 11111
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHh
Q 008887 447 LLIVASQWSGVACIRQEKWEEGIAHLERIG 476 (550)
Q Consensus 447 ~l~~a~~~lg~~~~~~g~~~eA~~~~~~al 476 (550)
.++..+|.++...|++++|++.|++++
T Consensus 119 ---~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 119 ---LAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred ---HHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 255679999999999999999999875
No 168
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.23 E-value=2.5e-06 Score=66.32 Aligned_cols=62 Identities=31% Similarity=0.457 Sum_probs=59.0
Q ss_pred HHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCCh
Q 008887 376 SVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEP 442 (550)
Q Consensus 376 a~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~ 442 (550)
...|+..+++++|++.++++++.+|+++..+..+|.++...|++++|.+.++++++. +|+++
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~-----~p~~~ 63 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALEL-----SPDDP 63 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHH-----CCCcH
Confidence 457899999999999999999999999999999999999999999999999999999 88776
No 169
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.23 E-value=3e-05 Score=81.04 Aligned_cols=154 Identities=18% Similarity=0.098 Sum_probs=113.5
Q ss_pred HHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh------------------
Q 008887 373 IALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLF------------------ 434 (550)
Q Consensus 373 ~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~------------------ 434 (550)
++.|.++++.+..|+|+..++ -.++.+..+....|+++++.|+|++|++.|+..++-..
T Consensus 83 fEKAYc~Yrlnk~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l 159 (652)
T KOG2376|consen 83 FEKAYCEYRLNKLDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAAL 159 (652)
T ss_pred HHHHHHHHHcccHHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhh
Confidence 588999999999999999998 45666677888999999999999999999988754310
Q ss_pred ----hcCCCCChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCC----CCCCc---cccccchhHHHHHHHHHHh
Q 008887 435 ----LAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLK----EPEEP---KSKAHYYDGLVVLASALCN 503 (550)
Q Consensus 435 ----~~~~p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~----~p~~~---~~~~~~~~~~~~La~~~~~ 503 (550)
.-..|..++ ...+..||.+..+...|+|.+|++.++++++++ +.++. +-......+...++-++..
T Consensus 160 ~~~~~q~v~~v~e---~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~ 236 (652)
T KOG2376|consen 160 QVQLLQSVPEVPE---DSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQL 236 (652)
T ss_pred hHHHHHhccCCCc---chHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHH
Confidence 000111111 011367889999999999999999999994332 01111 1112245678899999999
Q ss_pred cCCHHHHHHHHHHHHHcCCCcHHHHHHHH
Q 008887 504 VGRNAEAEKYLRLAAAHNPQYNELLEQLE 532 (550)
Q Consensus 504 ~g~~~eA~~~l~~al~~~p~~~~~~~~l~ 532 (550)
+|+.+||...|...++.++.+......+.
T Consensus 237 ~Gqt~ea~~iy~~~i~~~~~D~~~~Av~~ 265 (652)
T KOG2376|consen 237 QGQTAEASSIYVDIIKRNPADEPSLAVAV 265 (652)
T ss_pred hcchHHHHHHHHHHHHhcCCCchHHHHHh
Confidence 99999999999999999988876554443
No 170
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.22 E-value=1.6e-05 Score=72.29 Aligned_cols=101 Identities=23% Similarity=0.197 Sum_probs=88.1
Q ss_pred HHHHHHHHHHHcCCCCChHHHHHHHHhhCCCCh-----HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhH
Q 008887 371 ELIALSVKFLSKGDKERPIPLLQLALNKEPDNI-----NALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAI 445 (550)
Q Consensus 371 ~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~-----~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~ 445 (550)
.+-..|..++..|+|++|..-|..||...|... .++.+.|.++.+++.++.|++...+++++ +|++.
T Consensus 97 ~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel-----~pty~--- 168 (271)
T KOG4234|consen 97 SLKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIEL-----NPTYE--- 168 (271)
T ss_pred HHHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhc-----CchhH---
Confidence 334678899999999999999999999998753 46778999999999999999999999999 77776
Q ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCc
Q 008887 446 DLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEP 484 (550)
Q Consensus 446 ~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~ 484 (550)
.+....+.+|.+..+|++|++.|.+.++.+ |...
T Consensus 169 ----kAl~RRAeayek~ek~eealeDyKki~E~d-Ps~~ 202 (271)
T KOG4234|consen 169 ----KALERRAEAYEKMEKYEEALEDYKKILESD-PSRR 202 (271)
T ss_pred ----HHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-cchH
Confidence 255578999999999999999999999998 7543
No 171
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.22 E-value=5.1e-06 Score=85.43 Aligned_cols=63 Identities=16% Similarity=0.176 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhH---HHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 008887 450 VASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDG---LVVLASALCNVGRNAEAEKYLRLAAAH 520 (550)
Q Consensus 450 ~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~---~~~La~~~~~~g~~~eA~~~l~~al~~ 520 (550)
.+++++|.+|...|+|++|+..|+++++++ |++. ++ |+++|.||..+|+.++|++++++++++
T Consensus 76 ~a~~NLG~AL~~lGryeEAIa~f~rALeL~-Pd~a-------eA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 76 EDAVNLGLSLFSKGRVKDALAQFETALELN-PNPD-------EAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCch-------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 488999999999999999999999999998 8776 54 999999999999999999999999997
No 172
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.20 E-value=4.3e-06 Score=64.00 Aligned_cols=67 Identities=30% Similarity=0.492 Sum_probs=56.6
Q ss_pred HHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchh
Q 008887 413 QLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYD 492 (550)
Q Consensus 413 ~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~ 492 (550)
+++.|++++|++.|++++.. +|++. . +++.+|.++.+.|++++|.+.+++++..+ |+++ .
T Consensus 1 ll~~~~~~~A~~~~~~~l~~-----~p~~~-~------~~~~la~~~~~~g~~~~A~~~l~~~~~~~-~~~~-------~ 60 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQR-----NPDNP-E------ARLLLAQCYLKQGQYDEAEELLERLLKQD-PDNP-------E 60 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHH-----TTTSH-H------HHHHHHHHHHHTT-HHHHHHHHHCCHGGG-TTHH-------H
T ss_pred ChhccCHHHHHHHHHHHHHH-----CCCCH-H------HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCHH-------H
Confidence 36789999999999999999 88877 3 77789999999999999999999999997 7666 5
Q ss_pred HHHHHHH
Q 008887 493 GLVVLAS 499 (550)
Q Consensus 493 ~~~~La~ 499 (550)
.+..++.
T Consensus 61 ~~~l~a~ 67 (68)
T PF14559_consen 61 YQQLLAQ 67 (68)
T ss_dssp HHHHHHH
T ss_pred HHHHHhc
Confidence 6655554
No 173
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.19 E-value=2.5e-05 Score=66.18 Aligned_cols=105 Identities=19% Similarity=0.183 Sum_probs=89.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCcc
Q 008887 406 LILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPK 485 (550)
Q Consensus 406 ~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~ 485 (550)
+-..|......|+.++|++.|.+++.+ .|..+ . +|++.+.++.-+|+.++|++.+++++++. .....
T Consensus 46 LEl~~valaE~g~Ld~AlE~F~qal~l-----~P~ra-S------ayNNRAQa~RLq~~~e~ALdDLn~AleLa-g~~tr 112 (175)
T KOG4555|consen 46 LELKAIALAEAGDLDGALELFGQALCL-----APERA-S------AYNNRAQALRLQGDDEEALDDLNKALELA-GDQTR 112 (175)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHh-----cccch-H------hhccHHHHHHHcCChHHHHHHHHHHHHhc-Cccch
Confidence 445788899999999999999999999 77776 3 88999999999999999999999999996 32232
Q ss_pred ccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHH
Q 008887 486 SKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNE 526 (550)
Q Consensus 486 ~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~ 526 (550)
. .-.++...|.+|...|+.+.|+..|+.+.++...+..
T Consensus 113 t---acqa~vQRg~lyRl~g~dd~AR~DFe~AA~LGS~FAr 150 (175)
T KOG4555|consen 113 T---ACQAFVQRGLLYRLLGNDDAARADFEAAAQLGSKFAR 150 (175)
T ss_pred H---HHHHHHHHHHHHHHhCchHHHHHhHHHHHHhCCHHHH
Confidence 2 2367889999999999999999999999888766553
No 174
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.18 E-value=3e-05 Score=83.09 Aligned_cols=137 Identities=18% Similarity=0.119 Sum_probs=111.6
Q ss_pred HHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHH
Q 008887 371 ELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIV 450 (550)
Q Consensus 371 ~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~ 450 (550)
.++-+|+.|-..|++++|+++.++|++..|..++.+...|.++-+.|++++|.++++.|-.+ +..+. .
T Consensus 196 ~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~L-----D~~DR-y------ 263 (517)
T PF12569_consen 196 TLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEAREL-----DLADR-Y------ 263 (517)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhC-----ChhhH-H------
Confidence 44588999999999999999999999999999999999999999999999999999999999 55555 2
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCcccccc-c--hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 008887 451 ASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAH-Y--YDGLVVLASALCNVGRNAEAEKYLRLAAAHN 521 (550)
Q Consensus 451 a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~-~--~~~~~~La~~~~~~g~~~eA~~~l~~al~~~ 521 (550)
.....+..+.+.|+.++|.+.+....+.+ . ++....+ . ......-|.+|.+.|++..|...|..+.+.-
T Consensus 264 iNsK~aKy~LRa~~~e~A~~~~~~Ftr~~-~-~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f 335 (517)
T PF12569_consen 264 INSKCAKYLLRAGRIEEAEKTASLFTRED-V-DPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHF 335 (517)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHhhcCCC-C-CcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 33456778889999999999998876553 2 2211111 1 2233567899999999999999999887653
No 175
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=98.17 E-value=3.7e-05 Score=83.87 Aligned_cols=111 Identities=23% Similarity=0.230 Sum_probs=100.1
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCC
Q 008887 403 INALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPE 482 (550)
Q Consensus 403 ~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~ 482 (550)
...+...|+..+..|++++|.+.+.++++. +|.++ .+|+.||.+|.++|+.+++....-.|.-++ |.
T Consensus 139 l~~ll~eAN~lfarg~~eeA~~i~~EvIkq-----dp~~~-------~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~ 205 (895)
T KOG2076|consen 139 LRQLLGEANNLFARGDLEEAEEILMEVIKQ-----DPRNP-------IAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PK 205 (895)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHh-----Cccch-------hhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CC
Confidence 456677888888999999999999999999 88887 389999999999999999999999999998 98
Q ss_pred CccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHHHHHHHh
Q 008887 483 EPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQLEN 533 (550)
Q Consensus 483 ~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~l~~ 533 (550)
+. +.|..++....++|++++|+-+|.++++.+|.+.+....-..
T Consensus 206 d~-------e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~ 249 (895)
T KOG2076|consen 206 DY-------ELWKRLADLSEQLGNINQARYCYSRAIQANPSNWELIYERSS 249 (895)
T ss_pred Ch-------HHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHH
Confidence 88 999999999999999999999999999999999876554433
No 176
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.16 E-value=4.3e-06 Score=91.58 Aligned_cols=200 Identities=14% Similarity=0.083 Sum_probs=137.3
Q ss_pred hhhhHHHHHHHHHhcCHHHHhhhCCCCCCCCCCCCCCccccccCcCCCCchh----hccCccCCCChHHHHHHHHHHHHc
Q 008887 307 VTNSSFSIVQQLALKHPASRTMLGLPDKVVPAAARKPEEIDTLETTLESPAK----QLKISVENLTPKELIALSVKFLSK 382 (550)
Q Consensus 307 ~~s~~~~~~q~~~~~~p~~r~~l~i~~~~~~~~~~~s~~~~~~~~~~~~~~~----~~~~~~~~l~~~~l~~la~~~~~~ 382 (550)
..+-++.-..........+++++.+......+++..........+--...+. ..+-+.. .--.+....|..|...
T Consensus 497 ~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~-~~k~nW~~rG~yyLea 575 (1238)
T KOG1127|consen 497 FLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAF-ACKENWVQRGPYYLEA 575 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHH-HHHhhhhhccccccCc
Confidence 3444444444555556678889999877766554432211110000000000 0000000 1112333688899999
Q ss_pred CCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHHh
Q 008887 383 GDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQ 462 (550)
Q Consensus 383 g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~ 462 (550)
+++.+|+..|+.+++.+|.+.++|..+|.+|...|++..|++.|.++..+ +|.+. . +.+..+......
T Consensus 576 ~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L-----rP~s~-y------~~fk~A~~ecd~ 643 (1238)
T KOG1127|consen 576 HNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLL-----RPLSK-Y------GRFKEAVMECDN 643 (1238)
T ss_pred cchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhc-----CcHhH-H------HHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999 66665 2 667789999999
Q ss_pred cCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 008887 463 EKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAH 520 (550)
Q Consensus 463 g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~ 520 (550)
|+|++|+..++..+... ...........+.+...+..+...|-..+|...+++.++.
T Consensus 644 GkYkeald~l~~ii~~~-s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~ 700 (1238)
T KOG1127|consen 644 GKYKEALDALGLIIYAF-SLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIES 700 (1238)
T ss_pred hhHHHHHHHHHHHHHHH-HHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 99999999999988764 3333222335567777777777777777777777776553
No 177
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.16 E-value=3.8e-06 Score=83.85 Aligned_cols=136 Identities=20% Similarity=0.198 Sum_probs=102.6
Q ss_pred HHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHH
Q 008887 373 IALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVAS 452 (550)
Q Consensus 373 ~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~ 452 (550)
.-.|..+...|++++|++.+.+. ++.++......+|+..++++.|.+.++..-+. +.+.. + ..
T Consensus 106 ~~~A~i~~~~~~~~~AL~~l~~~-----~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~-----~eD~~-----l--~q 168 (290)
T PF04733_consen 106 LLAATILFHEGDYEEALKLLHKG-----GSLELLALAVQILLKMNRPDLAEKELKNMQQI-----DEDSI-----L--TQ 168 (290)
T ss_dssp HHHHHHHCCCCHHHHHHCCCTTT-----TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-----SCCHH-----H--HH
T ss_pred HHHHHHHHHcCCHHHHHHHHHcc-----CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCcHH-----H--HH
Confidence 35667788889988888877653 67899999999999999999999999887655 22111 1 22
Q ss_pred HHHHHHHHHhc--CHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHHHHH
Q 008887 453 QWSGVACIRQE--KWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQ 530 (550)
Q Consensus 453 ~~lg~~~~~~g--~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~ 530 (550)
..-+.+....| ++.+|...|++..+.. +..+ ..+..+|.|+..+|++++|.+.++++++.+|++++...+
T Consensus 169 La~awv~l~~g~e~~~~A~y~f~El~~~~-~~t~-------~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaN 240 (290)
T PF04733_consen 169 LAEAWVNLATGGEKYQDAFYIFEELSDKF-GSTP-------KLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLAN 240 (290)
T ss_dssp HHHHHHHHHHTTTCCCHHHHHHHHHHCCS---SH-------HHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHH
T ss_pred HHHHHHHHHhCchhHHHHHHHHHHHHhcc-CCCH-------HHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHH
Confidence 22333444445 6999999999988775 5555 788999999999999999999999999999999997776
Q ss_pred HHh
Q 008887 531 LEN 533 (550)
Q Consensus 531 l~~ 533 (550)
+--
T Consensus 241 liv 243 (290)
T PF04733_consen 241 LIV 243 (290)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
No 178
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=98.14 E-value=4.9e-06 Score=83.08 Aligned_cols=127 Identities=16% Similarity=0.155 Sum_probs=101.5
Q ss_pred HHHHHHHHHHcCCCCChHHHHHHHHhhCCCCh----HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHH
Q 008887 372 LIALSVKFLSKGDKERPIPLLQLALNKEPDNI----NALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDL 447 (550)
Q Consensus 372 l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~----~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~ 447 (550)
+...|..+++.|++...+..|+.|++..-++. .+|..+|++|...+||++|+++...-+.+.+..++.... .
T Consensus 20 LalEGERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGE-A--- 95 (639)
T KOG1130|consen 20 LALEGERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGE-A--- 95 (639)
T ss_pred HHHHHHHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhcc-c---
Confidence 34567789999999999999999999887764 456789999999999999999987766665444444333 2
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCC
Q 008887 448 LIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGR 506 (550)
Q Consensus 448 l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~ 506 (550)
.+.-++|..+.-.|.|++|+.++++-+.. .+.-.++.....++|++|.+|...|+
T Consensus 96 --KssgNLGNtlKv~G~fdeA~~cc~rhLd~--areLgDrv~e~RAlYNlgnvYhakGk 150 (639)
T KOG1130|consen 96 --KSSGNLGNTLKVKGAFDEALTCCFRHLDF--ARELGDRVLESRALYNLGNVYHAKGK 150 (639)
T ss_pred --cccccccchhhhhcccchHHHHHHHHhHH--HHHHhHHHhhhHHHhhhhhhhhhccc
Confidence 26678999999999999999999998877 33444445566899999999988875
No 179
>PRK11906 transcriptional regulator; Provisional
Probab=98.07 E-value=6.2e-05 Score=77.70 Aligned_cols=132 Identities=14% Similarity=0.090 Sum_probs=104.2
Q ss_pred ChHHHHHHHHHHHHc---------CCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCC
Q 008887 368 TPKELIALSVKFLSK---------GDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGH 438 (550)
Q Consensus 368 ~~~~l~~la~~~~~~---------g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~ 438 (550)
.+.++.-+|.+++.. .+..+|.++.++|++.+|.|+.++..+|.++...++++.|...|++|+.+ +
T Consensus 294 ~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L-----~ 368 (458)
T PRK11906 294 KTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIH-----S 368 (458)
T ss_pred cHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhc-----C
Confidence 355555666665544 12335889999999999999999999999999999999999999999999 8
Q ss_pred CCChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHH--HHHhcCCHHHHHHHHHH
Q 008887 439 PTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLAS--ALCNVGRNAEAEKYLRL 516 (550)
Q Consensus 439 p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~--~~~~~g~~~eA~~~l~~ 516 (550)
|+.. .+++..|....-.|+.++|++.+++++++. |... .+-...-. .|. ....++|+..|-+
T Consensus 369 Pn~A-------~~~~~~~~~~~~~G~~~~a~~~i~~alrLs-P~~~-------~~~~~~~~~~~~~-~~~~~~~~~~~~~ 432 (458)
T PRK11906 369 TDIA-------SLYYYRALVHFHNEKIEEARICIDKSLQLE-PRRR-------KAVVIKECVDMYV-PNPLKNNIKLYYK 432 (458)
T ss_pred CccH-------HHHHHHHHHHHHcCCHHHHHHHHHHHhccC-chhh-------HHHHHHHHHHHHc-CCchhhhHHHHhh
Confidence 8887 388899999999999999999999999997 7544 22222222 455 4458999998876
Q ss_pred HHHc
Q 008887 517 AAAH 520 (550)
Q Consensus 517 al~~ 520 (550)
-.+.
T Consensus 433 ~~~~ 436 (458)
T PRK11906 433 ETES 436 (458)
T ss_pred cccc
Confidence 5543
No 180
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.05 E-value=0.00015 Score=68.06 Aligned_cols=117 Identities=23% Similarity=0.196 Sum_probs=87.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHh---hhcCCCCChhhHHHHH---HHHHHHHHHHHHhcCHHHHHHHHHHHhc
Q 008887 404 NALILMGQTQLQKGLLEEAVEYLECAISKL---FLAGHPTEPEAIDLLI---VASQWSGVACIRQEKWEEGIAHLERIGN 477 (550)
Q Consensus 404 ~a~~~lg~~~~~~g~~~eA~~~~~~al~l~---~~~~~p~~~~~~~~l~---~a~~~lg~~~~~~g~~~eA~~~~~~al~ 477 (550)
.++...|+-+++.|+|++|...|+.|+-.. .....|.++++.+.-. -.+.|++.|+...|+|-++++.+...+.
T Consensus 179 ~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~ 258 (329)
T KOG0545|consen 179 PVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILR 258 (329)
T ss_pred HHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHh
Confidence 344455555556666666665555554321 2233555554432211 1567899999999999999999999999
Q ss_pred CCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHHH
Q 008887 478 LKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELL 528 (550)
Q Consensus 478 ~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~ 528 (550)
.+ |++. .+++..|.++...=+.++|.+.+.++++++|......
T Consensus 259 ~~-~~nv-------KA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasvV 301 (329)
T KOG0545|consen 259 HH-PGNV-------KAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASVV 301 (329)
T ss_pred cC-CchH-------HHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHHH
Confidence 98 9888 9999999999999999999999999999999987644
No 181
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=97.99 E-value=0.00017 Score=72.31 Aligned_cols=129 Identities=24% Similarity=0.340 Sum_probs=107.4
Q ss_pred ChHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHH
Q 008887 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDL 447 (550)
Q Consensus 368 ~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~ 447 (550)
+|+-....+..+...|++++|.+..+++++..-+.- ....++ ...-++.+.=++..++.+.. .|++| .
T Consensus 262 ~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~-L~~~~~--~l~~~d~~~l~k~~e~~l~~-----h~~~p-~--- 329 (400)
T COG3071 262 DPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR-LCRLIP--RLRPGDPEPLIKAAEKWLKQ-----HPEDP-L--- 329 (400)
T ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh-HHHHHh--hcCCCCchHHHHHHHHHHHh-----CCCCh-h---
Confidence 455666889999999999999999999999765543 222333 34668888999999999999 78777 2
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 008887 448 LIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAH 520 (550)
Q Consensus 448 l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~ 520 (550)
.+..+|..+++.+.+.+|.++|+.+++.. ++ . ..+..+|.++.+.|+..+|.+.+++++..
T Consensus 330 ---L~~tLG~L~~k~~~w~kA~~~leaAl~~~-~s-~-------~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 330 ---LLSTLGRLALKNKLWGKASEALEAALKLR-PS-A-------SDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred ---HHHHHHHHHHHhhHHHHHHHHHHHHHhcC-CC-h-------hhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 67789999999999999999999999996 43 3 57889999999999999999999998853
No 182
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=97.99 E-value=4.7e-05 Score=75.17 Aligned_cols=147 Identities=13% Similarity=0.045 Sum_probs=115.7
Q ss_pred HHHHHHHHHHHcCCCCChHHHHHHHHhhCCC------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhh
Q 008887 371 ELIALSVKFLSKGDKERPIPLLQLALNKEPD------NINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEA 444 (550)
Q Consensus 371 ~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~------~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~ 444 (550)
....++.++...+.++++++.|++|++.... ...++..+|..+.+.+|+++|.-+..+|.++....+- .+. .
T Consensus 124 ~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l-~d~-~ 201 (518)
T KOG1941|consen 124 VSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGL-KDW-S 201 (518)
T ss_pred hhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCc-Cch-h
Confidence 3446888999999999999999999995432 2457789999999999999999999999998422111 111 2
Q ss_pred HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 008887 445 IDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHN 521 (550)
Q Consensus 445 ~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~ 521 (550)
..+-..+.|.+++++..+|+..+|.++++++.++ .-..+++.-++.....+|.+|...|+.|.|..-|+.+...-
T Consensus 202 ~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~kl--al~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m 276 (518)
T KOG1941|consen 202 LKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKL--ALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTM 276 (518)
T ss_pred HHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHH--HHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHH
Confidence 2222337789999999999999999999999877 23333444566888899999999999999999999987654
No 183
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.95 E-value=0.0001 Score=72.58 Aligned_cols=149 Identities=16% Similarity=0.120 Sum_probs=112.3
Q ss_pred HHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHH------HHhhhcCCCCChhh-H-
Q 008887 374 ALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAI------SKLFLAGHPTEPEA-I- 445 (550)
Q Consensus 374 ~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al------~l~~~~~~p~~~~~-~- 445 (550)
=+|..++..|+|++|++.|+-+.+.+.-+.+.+.+++.+++..|.|.+|....+++- ++.+.....-+.+. .
T Consensus 62 Wia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklndEk~~~ 141 (557)
T KOG3785|consen 62 WIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRIL 141 (557)
T ss_pred HHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcHHHHH
Confidence 478899999999999999999999888888999999999999999999988765541 11111111111100 0
Q ss_pred ------HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008887 446 ------DLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAA 519 (550)
Q Consensus 446 ------~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~ 519 (550)
+...+-...++.+.+-.-.|.+|++.|.+++..+ |+.. ....++|.||.+++-++-+.+.++-.++
T Consensus 142 ~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn-~ey~-------alNVy~ALCyyKlDYydvsqevl~vYL~ 213 (557)
T KOG3785|consen 142 TFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDN-PEYI-------ALNVYMALCYYKLDYYDVSQEVLKVYLR 213 (557)
T ss_pred HHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcC-hhhh-------hhHHHHHHHHHhcchhhhHHHHHHHHHH
Confidence 0000122345666667778999999999999886 7555 7788999999999999999999999999
Q ss_pred cCCCcHHHHHH
Q 008887 520 HNPQYNELLEQ 530 (550)
Q Consensus 520 ~~p~~~~~~~~ 530 (550)
..|+..-+.+.
T Consensus 214 q~pdStiA~NL 224 (557)
T KOG3785|consen 214 QFPDSTIAKNL 224 (557)
T ss_pred hCCCcHHHHHH
Confidence 99998766553
No 184
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.94 E-value=6.4e-05 Score=77.76 Aligned_cols=97 Identities=23% Similarity=0.247 Sum_probs=87.5
Q ss_pred ChHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHH
Q 008887 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDL 447 (550)
Q Consensus 368 ~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~ 447 (550)
+|+...-+|..+...++..+|++.++++++.+|.+...+...+..+...++++.|++..+++++. .|.+-
T Consensus 199 ~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~l-----sP~~f----- 268 (395)
T PF09295_consen 199 DPEVAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELALEIAKKAVEL-----SPSEF----- 268 (395)
T ss_pred CCcHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-----CchhH-----
Confidence 45566678999999999999999999999999999999999999999999999999999999999 67665
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHh
Q 008887 448 LIVASQWSGVACIRQEKWEEGIAHLERIG 476 (550)
Q Consensus 448 l~~a~~~lg~~~~~~g~~~eA~~~~~~al 476 (550)
..|+.|+.+|...|++++|+..+..+-
T Consensus 269 --~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 269 --ETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred --HHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 389999999999999999998887544
No 185
>PLN03218 maturation of RBCL 1; Provisional
Probab=97.94 E-value=0.00035 Score=81.40 Aligned_cols=58 Identities=16% Similarity=0.106 Sum_probs=31.2
Q ss_pred HHHHHHHHcCCCCChHHHHHHHHhhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008887 374 ALSVKFLSKGDKERPIPLLQLALNKE-PDNINALILMGQTQLQKGLLEEAVEYLECAIS 431 (550)
Q Consensus 374 ~la~~~~~~g~~~~A~~~~~~aL~~~-p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~ 431 (550)
.+...|.+.|++++|.+.|++..+.+ +.+...|..+...|.+.|++++|.+.|++..+
T Consensus 584 aLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~ 642 (1060)
T PLN03218 584 ALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKK 642 (1060)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 34445555566666666665555544 23445555555555555555555555555443
No 186
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.93 E-value=0.00013 Score=76.34 Aligned_cols=133 Identities=17% Similarity=0.093 Sum_probs=105.7
Q ss_pred HHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHH
Q 008887 370 KELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLI 449 (550)
Q Consensus 370 ~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~ 449 (550)
.+++.--..+...|+|++|+....+.+...|++..+......++.+.++|++|++..++-... ....
T Consensus 13 ~~l~t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~---------~~~~---- 79 (652)
T KOG2376|consen 13 EALLTDLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL---------LVIN---- 79 (652)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh---------hhcc----
Confidence 455555567788899999999999999999999999999999999999999999655443322 1111
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHH
Q 008887 450 VASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNE 526 (550)
Q Consensus 450 ~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~ 526 (550)
...+.-+.|.+++++.|+|++.++- ++ +.+. ......|..++++|+|++|...|+...+.+.++.+
T Consensus 80 ~~~fEKAYc~Yrlnk~Dealk~~~~-~~---~~~~-------~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d 145 (652)
T KOG2376|consen 80 SFFFEKAYCEYRLNKLDEALKTLKG-LD---RLDD-------KLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQD 145 (652)
T ss_pred hhhHHHHHHHHHcccHHHHHHHHhc-cc---ccch-------HHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHH
Confidence 0124689999999999999999983 22 3333 57889999999999999999999999887755544
No 187
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=97.92 E-value=7.1e-05 Score=67.51 Aligned_cols=64 Identities=22% Similarity=0.330 Sum_probs=50.5
Q ss_pred cCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCC-----------HHHHHHHHHHHHHcCCCcHHHHHHH
Q 008887 463 EKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGR-----------NAEAEKYLRLAAAHNPQYNELLEQL 531 (550)
Q Consensus 463 g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~-----------~~eA~~~l~~al~~~p~~~~~~~~l 531 (550)
.-+++|+.-|++|+.++ |+.. +++.++|.+|..++. +++|.++|+++...+|++..+++.|
T Consensus 49 ~miedAisK~eeAL~I~-P~~h-------dAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksL 120 (186)
T PF06552_consen 49 KMIEDAISKFEEALKIN-PNKH-------DALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSL 120 (186)
T ss_dssp HHHHHHHHHHHHHHHH--TT-H-------HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHH
T ss_pred HHHHHHHHHHHHHHhcC-CchH-------HHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 34678888899999998 8777 899999999876664 7888999999999999999999888
Q ss_pred Hhh
Q 008887 532 ENN 534 (550)
Q Consensus 532 ~~~ 534 (550)
+-.
T Consensus 121 e~~ 123 (186)
T PF06552_consen 121 EMA 123 (186)
T ss_dssp HHH
T ss_pred HHH
Confidence 753
No 188
>PLN03218 maturation of RBCL 1; Provisional
Probab=97.89 E-value=0.00046 Score=80.44 Aligned_cols=130 Identities=19% Similarity=0.177 Sum_probs=80.0
Q ss_pred HHHHHHHHHHHcCCCCChHHHHHHHHhh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHH
Q 008887 371 ELIALSVKFLSKGDKERPIPLLQLALNK--EPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLL 448 (550)
Q Consensus 371 ~l~~la~~~~~~g~~~~A~~~~~~aL~~--~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l 448 (550)
....+...|.+.|++++|.+.|++..+. .|+ ...+..+...|.+.|++++|.+.+++..+. +.... .
T Consensus 616 tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD-~~TynsLI~a~~k~G~~eeA~~l~~eM~k~-----G~~pd-~---- 684 (1060)
T PLN03218 616 VYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPD-EVFFSALVDVAGHAGDLDKAFEILQDARKQ-----GIKLG-T---- 684 (1060)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHc-----CCCCC-H----
Confidence 3345566677777777777777777664 233 456667777777777777777777776654 11111 1
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008887 449 IVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAA 519 (550)
Q Consensus 449 ~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~ 519 (550)
..+..+..+|.+.|++++|.+.|++..+..-..+. ..|..+...|.+.|+.++|.+.+++..+
T Consensus 685 -~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~Pdv-------vtyN~LI~gy~k~G~~eeAlelf~eM~~ 747 (1060)
T PLN03218 685 -VSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTV-------STMNALITALCEGNQLPKALEVLSEMKR 747 (1060)
T ss_pred -HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCH-------HHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 15556666777777777777777765443211122 4566666677777777777777766554
No 189
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.88 E-value=0.00025 Score=67.30 Aligned_cols=142 Identities=14% Similarity=0.128 Sum_probs=116.9
Q ss_pred HHHHHHHHHHHcCCCCChHHHHHHHHhhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHH
Q 008887 371 ELIALSVKFLSKGDKERPIPLLQLALNKE-PDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLI 449 (550)
Q Consensus 371 ~l~~la~~~~~~g~~~~A~~~~~~aL~~~-p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~ 449 (550)
..+-++..+.-.|+|.-....+.+.++.+ |.++.....+|.+.++.||.+.|..+|+++-+.. +.-+. .+.-.
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~----~kL~~--~q~~~ 252 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVT----QKLDG--LQGKI 252 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH----hhhhc--cchhH
Confidence 34467778888999999999999999988 6678888899999999999999999999654332 11111 11111
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHH
Q 008887 450 VASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNE 526 (550)
Q Consensus 450 ~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~ 526 (550)
....+.+.++.-++++.+|...+.++++.+ +.++ .+..+.|.|+.-.|+..+|++..+.++...|...-
T Consensus 253 ~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D-~~~~-------~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~l 321 (366)
T KOG2796|consen 253 MVLMNSAFLHLGQNNFAEAHRFFTEILRMD-PRNA-------VANNNKALCLLYLGKLKDALKQLEAMVQQDPRHYL 321 (366)
T ss_pred HHHhhhhhheecccchHHHHHHHhhccccC-CCch-------hhhchHHHHHHHHHHHHHHHHHHHHHhccCCccch
Confidence 255678888999999999999999999998 8888 88899999999999999999999999999988653
No 190
>PRK04841 transcriptional regulator MalT; Provisional
Probab=97.88 E-value=0.00015 Score=84.60 Aligned_cols=142 Identities=19% Similarity=0.074 Sum_probs=106.0
Q ss_pred HHHHHHHHHcCCCCChHHHHHHHHhhCCCC-----hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHH
Q 008887 373 IALSVKFLSKGDKERPIPLLQLALNKEPDN-----INALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDL 447 (550)
Q Consensus 373 ~~la~~~~~~g~~~~A~~~~~~aL~~~p~~-----~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~ 447 (550)
...+..+...|++++|..+++++++..+.. ..+...+|.++...|++++|..+++++++.....+++ ..
T Consensus 456 ~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~------~~ 529 (903)
T PRK04841 456 ALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVY------HY 529 (903)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcch------HH
Confidence 356788899999999999999999854432 2356789999999999999999999999884222111 11
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCc-cccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 008887 448 LIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEP-KSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHN 521 (550)
Q Consensus 448 l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~-~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~ 521 (550)
...+..++|.++..+|++++|.+.++++++.. .... .........+..+|.++...|++++|.+.+++++...
T Consensus 530 ~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~ 603 (903)
T PRK04841 530 ALWSLLQQSEILFAQGFLQAAYETQEKAFQLI-EEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVL 603 (903)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH-HHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhh
Confidence 12266789999999999999999999998864 2211 0111122345678888888999999999998887753
No 191
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.82 E-value=0.00076 Score=61.00 Aligned_cols=130 Identities=20% Similarity=0.207 Sum_probs=99.8
Q ss_pred HHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHH
Q 008887 379 FLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVA 458 (550)
Q Consensus 379 ~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~ 458 (550)
....=|.++......+.++..|. ..-.+.+|+...+.|++.||..+|++++.-- .-.++ . ....++.+
T Consensus 66 ~~q~ldP~R~~Rea~~~~~~ApT-vqnr~rLa~al~elGr~~EA~~hy~qalsG~----fA~d~---a----~lLglA~A 133 (251)
T COG4700 66 LQQKLDPERHLREATEELAIAPT-VQNRYRLANALAELGRYHEAVPHYQQALSGI----FAHDA---A----MLLGLAQA 133 (251)
T ss_pred HHHhcChhHHHHHHHHHHhhchh-HHHHHHHHHHHHHhhhhhhhHHHHHHHhccc----cCCCH---H----HHHHHHHH
Confidence 33344555555555555655555 3557889999999999999999999997652 22222 1 34468999
Q ss_pred HHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHH
Q 008887 459 CIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNE 526 (550)
Q Consensus 459 ~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~ 526 (550)
.+..++..+|...+++..+.. |... ..+....+|+.|...|++++|+..++.++...|+...
T Consensus 134 qfa~~~~A~a~~tLe~l~e~~-pa~r-----~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~~a 195 (251)
T COG4700 134 QFAIQEFAAAQQTLEDLMEYN-PAFR-----SPDGHLLFARTLAAQGKYADAESAFEVAISYYPGPQA 195 (251)
T ss_pred HHhhccHHHHHHHHHHHhhcC-CccC-----CCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCCHHH
Confidence 999999999999999999986 5432 2367889999999999999999999999998887653
No 192
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.81 E-value=0.00012 Score=78.90 Aligned_cols=84 Identities=15% Similarity=0.007 Sum_probs=71.5
Q ss_pred ChHHHHHHHHhh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHHhcC
Q 008887 387 RPIPLLQLALNK--EPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEK 464 (550)
Q Consensus 387 ~A~~~~~~aL~~--~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~g~ 464 (550)
++.+..++++.. ++.++.++..+|..+...|++++|..++++|+++ +|+ . .+|..+|.++...|+
T Consensus 402 ~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L-----~ps-~-------~a~~~lG~~~~~~G~ 468 (517)
T PRK10153 402 ALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDL-----EMS-W-------LNYVLLGKVYELKGD 468 (517)
T ss_pred HHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCC-H-------HHHHHHHHHHHHcCC
Confidence 344555555553 7778899999999999999999999999999999 663 2 278889999999999
Q ss_pred HHHHHHHHHHHhcCCCCCCc
Q 008887 465 WEEGIAHLERIGNLKEPEEP 484 (550)
Q Consensus 465 ~~eA~~~~~~al~~~~p~~~ 484 (550)
+++|++.|++|++++ |.++
T Consensus 469 ~~eA~~~~~~A~~L~-P~~p 487 (517)
T PRK10153 469 NRLAADAYSTAFNLR-PGEN 487 (517)
T ss_pred HHHHHHHHHHHHhcC-CCCc
Confidence 999999999999998 8877
No 193
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=97.77 E-value=0.0005 Score=77.82 Aligned_cols=126 Identities=15% Similarity=0.067 Sum_probs=74.4
Q ss_pred HHHHHHHHHHcCCCCChHHHHHHHHhhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHH
Q 008887 372 LIALSVKFLSKGDKERPIPLLQLALNKE-PDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIV 450 (550)
Q Consensus 372 l~~la~~~~~~g~~~~A~~~~~~aL~~~-p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~ 450 (550)
+..+...|...|+.++|+++|++..+.. .-+..++..+...+.+.|++++|.+.+++.++.. .+.+. .
T Consensus 293 ~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g----~~~d~-~------ 361 (697)
T PLN03081 293 WNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTG----FPLDI-V------ 361 (697)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhC----CCCCe-e------
Confidence 3355666667777777777777665532 1234566666666777777777777666666551 11111 1
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008887 451 ASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAA 519 (550)
Q Consensus 451 a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~ 519 (550)
.+..+...|.+.|++++|.+.|++..+. +. ..|..+...|.+.|+.++|.+.|++..+
T Consensus 362 ~~~~Li~~y~k~G~~~~A~~vf~~m~~~----d~-------~t~n~lI~~y~~~G~~~~A~~lf~~M~~ 419 (697)
T PLN03081 362 ANTALVDLYSKWGRMEDARNVFDRMPRK----NL-------ISWNALIAGYGNHGRGTKAVEMFERMIA 419 (697)
T ss_pred ehHHHHHHHHHCCCHHHHHHHHHhCCCC----Ce-------eeHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4445666666666666666666654322 12 4566666666666666666666666554
No 194
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=97.76 E-value=0.00029 Score=79.75 Aligned_cols=141 Identities=15% Similarity=0.095 Sum_probs=100.8
Q ss_pred HHHHHHHHHHHcCCCCChHHHHHHHHhhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHH
Q 008887 371 ELIALSVKFLSKGDKERPIPLLQLALNKE-PDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLI 449 (550)
Q Consensus 371 ~l~~la~~~~~~g~~~~A~~~~~~aL~~~-p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~ 449 (550)
.+..+...|...|+.++|+++|++..+.. .-+..++..+...+.+.|+.++|.++|++..+. ..-.|..
T Consensus 393 t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~-----~g~~p~~----- 462 (697)
T PLN03081 393 SWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSEN-----HRIKPRA----- 462 (697)
T ss_pred eHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHh-----cCCCCCc-----
Confidence 34467777888888888888888877643 123556777778888888888888888887664 2222322
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHHHH
Q 008887 450 VASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLE 529 (550)
Q Consensus 450 ~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~ 529 (550)
..|..+...+.+.|++++|.+.+++.- .. |+ . ..|..+..++...|+.+.|...+++.+++.|++.....
T Consensus 463 ~~y~~li~~l~r~G~~~eA~~~~~~~~-~~-p~-~-------~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~ 532 (697)
T PLN03081 463 MHYACMIELLGREGLLDEAYAMIRRAP-FK-PT-V-------NMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYV 532 (697)
T ss_pred cchHhHHHHHHhcCCHHHHHHHHHHCC-CC-CC-H-------HHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchH
Confidence 155567888888888888888887642 21 32 2 56888888888899999999999988888887654433
Q ss_pred HH
Q 008887 530 QL 531 (550)
Q Consensus 530 ~l 531 (550)
.+
T Consensus 533 ~L 534 (697)
T PLN03081 533 VL 534 (697)
T ss_pred HH
Confidence 33
No 195
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.76 E-value=0.0014 Score=63.78 Aligned_cols=148 Identities=24% Similarity=0.237 Sum_probs=104.7
Q ss_pred HHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHH-
Q 008887 370 KELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLL- 448 (550)
Q Consensus 370 ~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l- 448 (550)
+..+..+......|++.+|...|..++...|++..+...++.+|...|+.++|...+... |.+.......
T Consensus 135 e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~l---------P~~~~~~~~~~ 205 (304)
T COG3118 135 EEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAAL---------PLQAQDKAAHG 205 (304)
T ss_pred HHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhC---------cccchhhHHHH
Confidence 345578889999999999999999999999999999999999999999999999877543 2222111000
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--cHH
Q 008887 449 IVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQ--YNE 526 (550)
Q Consensus 449 ~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~--~~~ 526 (550)
..++..+ +.+.....+..+ +++.+..+ |+|. ++.+.+|..|...|++++|.+.+-..++.+-+ +.+
T Consensus 206 l~a~i~l---l~qaa~~~~~~~-l~~~~aad-Pdd~-------~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~ 273 (304)
T COG3118 206 LQAQIEL---LEQAAATPEIQD-LQRRLAAD-PDDV-------EAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGE 273 (304)
T ss_pred HHHHHHH---HHHHhcCCCHHH-HHHHHHhC-CCCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcH
Confidence 0111222 222233333322 33334455 8888 99999999999999999999999999987744 445
Q ss_pred HHHHHHhhHHHH
Q 008887 527 LLEQLENNDEEF 538 (550)
Q Consensus 527 ~~~~l~~~~~~~ 538 (550)
.++++-+..+-.
T Consensus 274 ~Rk~lle~f~~~ 285 (304)
T COG3118 274 ARKTLLELFEAF 285 (304)
T ss_pred HHHHHHHHHHhc
Confidence 666665544433
No 196
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.73 E-value=0.00085 Score=64.05 Aligned_cols=134 Identities=23% Similarity=0.227 Sum_probs=100.6
Q ss_pred HHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHH
Q 008887 372 LIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVA 451 (550)
Q Consensus 372 l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a 451 (550)
+..-|..++..|++++|+....+ -.+.++...-..++.+..+.+-|.+.+++..++ .++. .
T Consensus 111 ~l~aa~i~~~~~~~deAl~~~~~-----~~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i---------ded~-----t 171 (299)
T KOG3081|consen 111 LLLAAIIYMHDGDFDEALKALHL-----GENLEAAALNVQILLKMHRFDLAEKELKKMQQI---------DEDA-----T 171 (299)
T ss_pred HHHhhHHhhcCCChHHHHHHHhc-----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---------chHH-----H
Confidence 33567788999999999988776 356677777888888999999999988888877 2121 1
Q ss_pred HHHHHHHHH----HhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHH
Q 008887 452 SQWSGVACI----RQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNEL 527 (550)
Q Consensus 452 ~~~lg~~~~----~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~ 527 (550)
...||.++. ..+++.+|.-.|++.-+.. +..+ .....++.|+..+|++++|...++.++..++++++.
T Consensus 172 LtQLA~awv~la~ggek~qdAfyifeE~s~k~-~~T~-------~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpet 243 (299)
T KOG3081|consen 172 LTQLAQAWVKLATGGEKIQDAFYIFEELSEKT-PPTP-------LLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPET 243 (299)
T ss_pred HHHHHHHHHHHhccchhhhhHHHHHHHHhccc-CCCh-------HHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHH
Confidence 222444433 2356888888888877755 5555 678888888999999999999999999988888887
Q ss_pred HHHHH
Q 008887 528 LEQLE 532 (550)
Q Consensus 528 ~~~l~ 532 (550)
+.++-
T Consensus 244 L~Nli 248 (299)
T KOG3081|consen 244 LANLI 248 (299)
T ss_pred HHHHH
Confidence 76654
No 197
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.73 E-value=0.00069 Score=63.38 Aligned_cols=152 Identities=13% Similarity=0.075 Sum_probs=108.4
Q ss_pred ChHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCC------hHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHhhhcCCCC
Q 008887 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDN------INALILMGQTQLQK-GLLEEAVEYLECAISKLFLAGHPT 440 (550)
Q Consensus 368 ~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~------~~a~~~lg~~~~~~-g~~~eA~~~~~~al~l~~~~~~p~ 440 (550)
+....+..|..+++.++.++|++++++++++.-+- +..+..+|.+|... .++++|+.+|+++-+.. ..
T Consensus 72 Daat~YveA~~cykk~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~y-----k~ 146 (288)
T KOG1586|consen 72 DAATTYVEAANCYKKVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYY-----KG 146 (288)
T ss_pred hHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHH-----cc
Confidence 34455566677788889999999999999977543 33345899999866 99999999999998883 22
Q ss_pred ChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 008887 441 EPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAH 520 (550)
Q Consensus 441 ~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~ 520 (550)
+. ....--..+...+......++|.+|+..|+++.... -++.-.+...-+-++.-|.|+.-.++.-.+...+++..++
T Consensus 147 ee-s~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s-~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~ 224 (288)
T KOG1586|consen 147 EE-SVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSS-LDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQEL 224 (288)
T ss_pred hh-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhc
Confidence 22 111111144456666678899999999999987653 3332222222234556678888889999999999999999
Q ss_pred CCCcHH
Q 008887 521 NPQYNE 526 (550)
Q Consensus 521 ~p~~~~ 526 (550)
+|.+..
T Consensus 225 dP~F~d 230 (288)
T KOG1586|consen 225 DPAFTD 230 (288)
T ss_pred CCcccc
Confidence 999865
No 198
>PRK04841 transcriptional regulator MalT; Provisional
Probab=97.72 E-value=0.00055 Score=79.91 Aligned_cols=142 Identities=15% Similarity=0.090 Sum_probs=108.4
Q ss_pred HHHHHHHHHcCCCCChHHHHHHHHhhCCC------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHH
Q 008887 373 IALSVKFLSKGDKERPIPLLQLALNKEPD------NINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAID 446 (550)
Q Consensus 373 ~~la~~~~~~g~~~~A~~~~~~aL~~~p~------~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~ 446 (550)
..+|..+...|++++|...+++++..... ...++..+|.++...|++++|..+++++++.....+.+..+..
T Consensus 495 ~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~-- 572 (903)
T PRK04841 495 SVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMH-- 572 (903)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHH--
Confidence 46788899999999999999999975332 1346678899999999999999999999998533322221111
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 008887 447 LLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHN 521 (550)
Q Consensus 447 ~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~ 521 (550)
...+..+|.++...|++++|.+.+++++... .... .......+..+|.++...|++++|.+.++++..+.
T Consensus 573 --~~~~~~la~~~~~~G~~~~A~~~~~~al~~~-~~~~--~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~ 642 (903)
T PRK04841 573 --EFLLRIRAQLLWEWARLDEAEQCARKGLEVL-SNYQ--PQQQLQCLAMLAKISLARGDLDNARRYLNRLENLL 642 (903)
T ss_pred --HHHHHHHHHHHHHhcCHHHHHHHHHHhHHhh-hccC--chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 1134568999999999999999999998874 2211 11234667789999999999999999999987753
No 199
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.71 E-value=3.5e-05 Score=50.18 Aligned_cols=34 Identities=26% Similarity=0.350 Sum_probs=31.8
Q ss_pred HHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHH
Q 008887 391 LLQLALNKEPDNINALILMGQTQLQKGLLEEAVE 424 (550)
Q Consensus 391 ~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~ 424 (550)
+|+++++.+|+++.+|+++|.+|...|++++|++
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 4789999999999999999999999999999863
No 200
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.70 E-value=0.00031 Score=65.85 Aligned_cols=100 Identities=17% Similarity=0.120 Sum_probs=88.8
Q ss_pred ChHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHH
Q 008887 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDL 447 (550)
Q Consensus 368 ~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~ 447 (550)
....+-+.|..++..+.|+.|+.+|.+++.++|..+..+.+.+.+|++.++|+.+....++++++ +|+..
T Consensus 9 ~a~qlkE~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql-----~~N~v----- 78 (284)
T KOG4642|consen 9 SAEQLKEQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQL-----DPNLV----- 78 (284)
T ss_pred HHHHHHhccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhc-----ChHHH-----
Confidence 34455578888999999999999999999999999999999999999999999999999999999 44433
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCC
Q 008887 448 LIVASQWSGVACIRQEKWEEGIAHLERIGNLK 479 (550)
Q Consensus 448 l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~ 479 (550)
.+++.+|.++.....|++|+..++++..+.
T Consensus 79 --k~h~flg~~~l~s~~~~eaI~~Lqra~sl~ 108 (284)
T KOG4642|consen 79 --KAHYFLGQWLLQSKGYDEAIKVLQRAYSLL 108 (284)
T ss_pred --HHHHHHHHHHHhhccccHHHHHHHHHHHHH
Confidence 488899999999999999999999996553
No 201
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.69 E-value=0.00016 Score=71.32 Aligned_cols=136 Identities=18% Similarity=0.171 Sum_probs=99.7
Q ss_pred HHHHHcCCCCChHHHHHHHHhhCCCCh-HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHH
Q 008887 377 VKFLSKGDKERPIPLLQLALNKEPDNI-NALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWS 455 (550)
Q Consensus 377 ~~~~~~g~~~~A~~~~~~aL~~~p~~~-~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~l 455 (550)
..++...||+.|+.+++-.+..+.+.- ....++|.++++.|+|++|...|+-+.+. +..+. +.+.++
T Consensus 30 edfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~-----~~~~~-------el~vnL 97 (557)
T KOG3785|consen 30 EDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNK-----DDAPA-------ELGVNL 97 (557)
T ss_pred HHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhcc-----CCCCc-------ccchhH
Confidence 357888999999999999887665443 66788999999999999999999887665 22222 256689
Q ss_pred HHHHHHhcCHHHHHHHHHHHhcCCCCCCcc----------c----------cccchhHHHHHHHHHHhcCCHHHHHHHHH
Q 008887 456 GVACIRQEKWEEGIAHLERIGNLKEPEEPK----------S----------KAHYYDGLVVLASALCNVGRNAEAEKYLR 515 (550)
Q Consensus 456 g~~~~~~g~~~eA~~~~~~al~~~~p~~~~----------~----------~~~~~~~~~~La~~~~~~g~~~eA~~~l~ 515 (550)
+.|++..|.|.+|....+++-+. |-+.. + -.+..+-...||.++...-.|.+|++.|+
T Consensus 98 Acc~FyLg~Y~eA~~~~~ka~k~--pL~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYk 175 (557)
T KOG3785|consen 98 ACCKFYLGQYIEAKSIAEKAPKT--PLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYK 175 (557)
T ss_pred HHHHHHHHHHHHHHHHHhhCCCC--hHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999988876433 21110 0 00123344556666555667999999999
Q ss_pred HHHHcCCCcHH
Q 008887 516 LAAAHNPQYNE 526 (550)
Q Consensus 516 ~al~~~p~~~~ 526 (550)
+++.-+|+...
T Consensus 176 rvL~dn~ey~a 186 (557)
T KOG3785|consen 176 RVLQDNPEYIA 186 (557)
T ss_pred HHHhcChhhhh
Confidence 99998887654
No 202
>PLN03077 Protein ECB2; Provisional
Probab=97.67 E-value=0.0011 Score=76.98 Aligned_cols=144 Identities=15% Similarity=0.134 Sum_probs=98.5
Q ss_pred HHHHHHHHHHHHcCCCCChHHHHHHHHhh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHH
Q 008887 370 KELIALSVKFLSKGDKERPIPLLQLALNK--EPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDL 447 (550)
Q Consensus 370 ~~l~~la~~~~~~g~~~~A~~~~~~aL~~--~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~ 447 (550)
..+..+...|...|+.++|+++|++..+. .|+ ..++..+-..+.+.|+.++|.++|++..+. ..-.|+.
T Consensus 555 ~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd-~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~-----~gi~P~~--- 625 (857)
T PLN03077 555 VSWNILLTGYVAHGKGSMAVELFNRMVESGVNPD-EVTFISLLCACSRSGMVTQGLEYFHSMEEK-----YSITPNL--- 625 (857)
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-cccHHHHHHHHhhcChHHHHHHHHHHHHHH-----hCCCCch---
Confidence 33445666777788888888888877663 344 344555556777888888888888777644 2223322
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHH
Q 008887 448 LIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNEL 527 (550)
Q Consensus 448 l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~ 527 (550)
..|..+..++.+.|++++|.+.+++. ... |+ . ..|..|-.++...|+.+.|....+++++++|++...
T Consensus 626 --~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~-pd-~-------~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~ 693 (857)
T PLN03077 626 --KHYACVVDLLGRAGKLTEAYNFINKM-PIT-PD-P-------AVWGALLNACRIHRHVELGELAAQHIFELDPNSVGY 693 (857)
T ss_pred --HHHHHHHHHHHhCCCHHHHHHHHHHC-CCC-CC-H-------HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcch
Confidence 25566788888888888888888774 232 32 2 567667777777888888888888888888888776
Q ss_pred HHHHHhh
Q 008887 528 LEQLENN 534 (550)
Q Consensus 528 ~~~l~~~ 534 (550)
...+.+.
T Consensus 694 y~ll~n~ 700 (857)
T PLN03077 694 YILLCNL 700 (857)
T ss_pred HHHHHHH
Confidence 6665543
No 203
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.67 E-value=0.0003 Score=69.00 Aligned_cols=114 Identities=18% Similarity=0.156 Sum_probs=94.5
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCC
Q 008887 402 NINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEP 481 (550)
Q Consensus 402 ~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p 481 (550)
.+..+..-|+-|++.++|..|+..|.+.+... -.++ +.....|.|.+.|....|+|..|+..+.+++..+ |
T Consensus 80 ~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~k-----c~D~---dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~-P 150 (390)
T KOG0551|consen 80 QAENYKEEGNEYFKEKRYKDAVESYTEGLKKK-----CADP---DLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLK-P 150 (390)
T ss_pred HHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhc-----CCCc---cHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcC-c
Confidence 34556678999999999999999999999882 2222 1222378899999999999999999999999998 8
Q ss_pred CCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHHHHHH
Q 008887 482 EEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQL 531 (550)
Q Consensus 482 ~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~l 531 (550)
... .+++.=|.|+.++.++++|...++..++++.+...+...+
T Consensus 151 ~h~-------Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d~e~K~~~~l~ 193 (390)
T KOG0551|consen 151 THL-------KAYIRGAKCLLELERFAEAVNWCEEGLQIDDEAKKAIELR 193 (390)
T ss_pred chh-------hhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHH
Confidence 877 9999999999999999999999999888876665554443
No 204
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.66 E-value=0.0036 Score=57.27 Aligned_cols=134 Identities=14% Similarity=0.118 Sum_probs=98.5
Q ss_pred HHHHHHHHHHcCCCCChHHHHHHHHhhCCCChH---HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHH
Q 008887 372 LIALSVKFLSKGDKERPIPLLQLALNKEPDNIN---ALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLL 448 (550)
Q Consensus 372 l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~---a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l 448 (550)
.++........++. +.....++....++.+.- +...++..+...+++++|+..++.++.. +.+..+.
T Consensus 56 ~Y~~~i~~~~ak~~-~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~---------t~De~lk 125 (207)
T COG2976 56 QYQNAIKAVQAKKP-KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQ---------TKDENLK 125 (207)
T ss_pred HHHHHHHHHhcCCc-hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc---------chhHHHH
Confidence 34444444445555 667777777777766543 3457899999999999999999999866 2122223
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCc
Q 008887 449 IVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQY 524 (550)
Q Consensus 449 ~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~ 524 (550)
..+-..++++...+|++|+|+..++...+.. .........|.++...|+.++|+..|+++++..++.
T Consensus 126 ~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~---------w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~ 192 (207)
T COG2976 126 ALAALRLARVQLQQKKADAALKTLDTIKEES---------WAAIVAELRGDILLAKGDKQEARAAYEKALESDASP 192 (207)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHhcccccc---------HHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCCh
Confidence 3366789999999999999999997633221 122456788999999999999999999999987443
No 205
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.66 E-value=0.00048 Score=66.53 Aligned_cols=143 Identities=10% Similarity=0.003 Sum_probs=92.1
Q ss_pred HHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHH----------HHHHHhhhcCCC
Q 008887 370 KELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLE----------CAISKLFLAGHP 439 (550)
Q Consensus 370 ~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~----------~al~l~~~~~~p 439 (550)
..+..+|.+|+...++.+|..+|++.-...|.........++.+++.+.+.+|+.... +++++...+...
T Consensus 45 AgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYs 124 (459)
T KOG4340|consen 45 AGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRVAFLLLDNPALHSRVLQLQAAIKYS 124 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcc
Confidence 3444677778888888888888888877778777777777888888888777765432 222221111000
Q ss_pred C-ChhhHHHHH---------HHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHH
Q 008887 440 T-EPEAIDLLI---------VASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAE 509 (550)
Q Consensus 440 ~-~~~~~~~l~---------~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~e 509 (550)
. +-.....+. ....+.|...++.|++++|++-|+.+++.. --.+ ..-+++|.|+++.|+++.
T Consensus 125 e~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvs-Gyqp-------llAYniALaHy~~~qyas 196 (459)
T KOG4340|consen 125 EGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVS-GYQP-------LLAYNLALAHYSSRQYAS 196 (459)
T ss_pred cccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhc-CCCc-------hhHHHHHHHHHhhhhHHH
Confidence 0 000000000 134557777788888888888888888875 3333 667788888888888888
Q ss_pred HHHHHHHHHHc
Q 008887 510 AEKYLRLAAAH 520 (550)
Q Consensus 510 A~~~l~~al~~ 520 (550)
|.++..+.++.
T Consensus 197 ALk~iSEIieR 207 (459)
T KOG4340|consen 197 ALKHISEIIER 207 (459)
T ss_pred HHHHHHHHHHh
Confidence 88877666543
No 206
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.64 E-value=0.00045 Score=73.93 Aligned_cols=124 Identities=26% Similarity=0.207 Sum_probs=100.5
Q ss_pred CCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHHh
Q 008887 383 GDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQ 462 (550)
Q Consensus 383 g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~ 462 (550)
.+.+.|.+.++...+.+|+..-.++..|.++...|+.++|++.|++++... ....+.-...++.+|.++.-+
T Consensus 247 ~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q--------~~~~Ql~~l~~~El~w~~~~~ 318 (468)
T PF10300_consen 247 VPLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQ--------SEWKQLHHLCYFELAWCHMFQ 318 (468)
T ss_pred CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccch--------hhHHhHHHHHHHHHHHHHHHH
Confidence 355678999999999999999999999999999999999999999998641 112222234778999999999
Q ss_pred cCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCH-------HHHHHHHHHHHHcC
Q 008887 463 EKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRN-------AEAEKYLRLAAAHN 521 (550)
Q Consensus 463 g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~-------~eA~~~l~~al~~~ 521 (550)
++|++|.+++.+..+.. .- ..+...|..|.|+...|+. ++|.++++++-.+.
T Consensus 319 ~~w~~A~~~f~~L~~~s-~W------Ska~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~ 377 (468)
T PF10300_consen 319 HDWEEAAEYFLRLLKES-KW------SKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLK 377 (468)
T ss_pred chHHHHHHHHHHHHhcc-cc------HHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHH
Confidence 99999999999988864 21 2335677888999999999 88888888876543
No 207
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.64 E-value=6.5e-05 Score=52.14 Aligned_cols=43 Identities=28% Similarity=0.409 Sum_probs=37.5
Q ss_pred hHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHH
Q 008887 369 PKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQ 411 (550)
Q Consensus 369 ~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~ 411 (550)
|+.+..+|..|...|++++|++.|+++++.+|+++.++..+|.
T Consensus 1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 1 PAAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 4566788999999999999999999999999999999988875
No 208
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=97.60 E-value=0.00027 Score=63.79 Aligned_cols=87 Identities=20% Similarity=0.199 Sum_probs=64.2
Q ss_pred CCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHH
Q 008887 385 KERPIPLLQLALNKEPDNINALILMGQTQLQKGLL----------EEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQW 454 (550)
Q Consensus 385 ~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~----------~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~ 454 (550)
++.|.+.++.....+|.+++.+++-|.++....++ ++|+.=|++|+.+ +|+.. .++++
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I-----~P~~h-------dAlw~ 74 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKI-----NPNKH-------DALWC 74 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH------TT-H-------HHHHH
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhc-----CCchH-------HHHHH
Confidence 45688889999999999999999988888776444 4677777888888 77776 27778
Q ss_pred HHHHHHHhcC-----------HHHHHHHHHHHhcCCCCCCc
Q 008887 455 SGVACIRQEK-----------WEEGIAHLERIGNLKEPEEP 484 (550)
Q Consensus 455 lg~~~~~~g~-----------~~eA~~~~~~al~~~~p~~~ 484 (550)
+|.+|..++. |++|.++|+++.+.+ |++.
T Consensus 75 lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~-P~ne 114 (186)
T PF06552_consen 75 LGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDED-PNNE 114 (186)
T ss_dssp HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH--TT-H
T ss_pred HHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcC-CCcH
Confidence 8888876543 788888999999887 8765
No 209
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=97.57 E-value=0.0044 Score=57.41 Aligned_cols=140 Identities=26% Similarity=0.327 Sum_probs=107.4
Q ss_pred ChHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHH-HHHHcCCHHHHHHHHHHHHHHhhhcCCCC-ChhhH
Q 008887 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQ-TQLQKGLLEEAVEYLECAISKLFLAGHPT-EPEAI 445 (550)
Q Consensus 368 ~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~-~~~~~g~~~eA~~~~~~al~l~~~~~~p~-~~~~~ 445 (550)
........+..+...++++++++.+++++..++.+.......+. ++...|++++|...+++++.. ++. ....
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~- 167 (291)
T COG0457 94 LAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALEL-----DPELNELA- 167 (291)
T ss_pred hHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCccchH-
Confidence 34455578888888888899999999998887777666666666 888999999999999998665 442 1111
Q ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCC-CccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCc
Q 008887 446 DLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPE-EPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQY 524 (550)
Q Consensus 446 ~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~-~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~ 524 (550)
......+..+...+++++|+..+.+++... +. .. ..+..++.++...+++++|...+..++...|..
T Consensus 168 ----~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~-------~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 235 (291)
T COG0457 168 ----EALLALGALLEALGRYEEALELLEKALKLN-PDDDA-------EALLNLGLLYLKLGKYEEALEYYEKALELDPDN 235 (291)
T ss_pred ----HHHHHhhhHHHHhcCHHHHHHHHHHHHhhC-cccch-------HHHHHhhHHHHHcccHHHHHHHHHHHHhhCccc
Confidence 134445666778889999999999988886 55 34 778888999999999999999999999888873
Q ss_pred H
Q 008887 525 N 525 (550)
Q Consensus 525 ~ 525 (550)
.
T Consensus 236 ~ 236 (291)
T COG0457 236 A 236 (291)
T ss_pred H
Confidence 3
No 210
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.56 E-value=0.00023 Score=49.30 Aligned_cols=42 Identities=33% Similarity=0.405 Sum_probs=39.5
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHHHHHHHh
Q 008887 492 DGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQLEN 533 (550)
Q Consensus 492 ~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~l~~ 533 (550)
.++..+|.+|.+.|++++|++.|+++++.+|++.+++..+.+
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 678999999999999999999999999999999999988764
No 211
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.56 E-value=0.00016 Score=67.76 Aligned_cols=95 Identities=20% Similarity=0.177 Sum_probs=84.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCcc
Q 008887 406 LILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPK 485 (550)
Q Consensus 406 ~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~ 485 (550)
+...|..++..++|..|+.+|.+++.+ +|+.+ . .+.+.+.|+++..+++.+.+.+++++++. |+..
T Consensus 13 lkE~gnk~f~~k~y~~ai~~y~raI~~-----nP~~~-~------Y~tnralchlk~~~~~~v~~dcrralql~-~N~v- 78 (284)
T KOG4642|consen 13 LKEQGNKCFIPKRYDDAIDCYSRAICI-----NPTVA-S------YYTNRALCHLKLKHWEPVEEDCRRALQLD-PNLV- 78 (284)
T ss_pred HHhccccccchhhhchHHHHHHHHHhc-----CCCcc-h------hhhhHHHHHHHhhhhhhhhhhHHHHHhcC-hHHH-
Confidence 344577788889999999999999999 88887 2 66789999999999999999999999998 8777
Q ss_pred ccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 008887 486 SKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAH 520 (550)
Q Consensus 486 ~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~ 520 (550)
.+++.+|.+..+...+++|+..+.++..+
T Consensus 79 ------k~h~flg~~~l~s~~~~eaI~~Lqra~sl 107 (284)
T KOG4642|consen 79 ------KAHYFLGQWLLQSKGYDEAIKVLQRAYSL 107 (284)
T ss_pred ------HHHHHHHHHHHhhccccHHHHHHHHHHHH
Confidence 99999999999999999999999999543
No 212
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=97.55 E-value=8e-05 Score=76.55 Aligned_cols=111 Identities=19% Similarity=0.196 Sum_probs=99.1
Q ss_pred HHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHH
Q 008887 371 ELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIV 450 (550)
Q Consensus 371 ~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~ 450 (550)
.+-+.|..++..++++.|+..|.+|++++|+++..+.+.+.++.+.+++..|+..+.+|++. +|... .
T Consensus 6 e~k~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~-----dP~~~-------K 73 (476)
T KOG0376|consen 6 ELKNEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIEL-----DPTYI-------K 73 (476)
T ss_pred hhhhHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhc-----Cchhh-------h
Confidence 34477888899999999999999999999999999999999999999999999999999999 66655 4
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHH
Q 008887 451 ASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASAL 501 (550)
Q Consensus 451 a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~ 501 (550)
+|+..|.++...+++.+|...|++..... |+++ .+...+.+|-
T Consensus 74 ~Y~rrg~a~m~l~~~~~A~~~l~~~~~l~-Pnd~-------~~~r~~~Ec~ 116 (476)
T KOG0376|consen 74 AYVRRGTAVMALGEFKKALLDLEKVKKLA-PNDP-------DATRKIDECN 116 (476)
T ss_pred eeeeccHHHHhHHHHHHHHHHHHHhhhcC-cCcH-------HHHHHHHHHH
Confidence 88889999999999999999999999998 9988 6666666664
No 213
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=97.54 E-value=0.0056 Score=58.65 Aligned_cols=148 Identities=15% Similarity=0.149 Sum_probs=113.6
Q ss_pred CChHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCCh---HHHHHHHHHHHHcC-----C---HHHHHHHHHHHHHHhhh
Q 008887 367 LTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNI---NALILMGQTQLQKG-----L---LEEAVEYLECAISKLFL 435 (550)
Q Consensus 367 l~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~---~a~~~lg~~~~~~g-----~---~~eA~~~~~~al~l~~~ 435 (550)
..+++.+.++..++..+++++|+...++.++.+|.++ -+++..|.++...= | ..+|+..+++.++.
T Consensus 69 ~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~r--- 145 (254)
T COG4105 69 YSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQR--- 145 (254)
T ss_pred ccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHH---
Confidence 4677888999999999999999999999999998775 45677888776442 2 23677788888888
Q ss_pred cCCCCChhhHHHHHH--------H--HHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcC
Q 008887 436 AGHPTEPEAIDLLIV--------A--SQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVG 505 (550)
Q Consensus 436 ~~~p~~~~~~~~l~~--------a--~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g 505 (550)
.|+.+...+.... + -...|..|.+.|.+..|+.-++++++.. ++.. ..-+++..+..+|..+|
T Consensus 146 --yPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y-~~t~----~~~eaL~~l~eaY~~lg 218 (254)
T COG4105 146 --YPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVLENY-PDTS----AVREALARLEEAYYALG 218 (254)
T ss_pred --CCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhcc-cccc----chHHHHHHHHHHHHHhC
Confidence 7876643333221 1 2336788999999999999999999986 5554 44479999999999999
Q ss_pred CHHHHHHHHHHHHHcCCCcH
Q 008887 506 RNAEAEKYLRLAAAHNPQYN 525 (550)
Q Consensus 506 ~~~eA~~~l~~al~~~p~~~ 525 (550)
-.++|...- +++..|..+.
T Consensus 219 l~~~a~~~~-~vl~~N~p~s 237 (254)
T COG4105 219 LTDEAKKTA-KVLGANYPDS 237 (254)
T ss_pred ChHHHHHHH-HHHHhcCCCC
Confidence 999998874 5666664433
No 214
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.51 E-value=0.0015 Score=64.17 Aligned_cols=123 Identities=12% Similarity=0.091 Sum_probs=69.1
Q ss_pred HHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHH
Q 008887 377 VKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSG 456 (550)
Q Consensus 377 ~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg 456 (550)
......|++.+|....++.|+.+|.+.-++.---.+++..|+.+.-...+++.+... +++-|... .....++
T Consensus 111 ai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~w----n~dlp~~s----Yv~Gmya 182 (491)
T KOG2610|consen 111 AILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKW----NADLPCYS----YVHGMYA 182 (491)
T ss_pred HHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhcccc----CCCCcHHH----HHHHHHH
Confidence 344556666666666666666666666666655566666666666666666665443 33333221 1222345
Q ss_pred HHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHH
Q 008887 457 VACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLR 515 (550)
Q Consensus 457 ~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~ 515 (550)
-++.+.|-|++|.+.-+++++++ +.|. -+...++.++...|++.|+.+...
T Consensus 183 FgL~E~g~y~dAEk~A~ralqiN-~~D~-------Wa~Ha~aHVlem~~r~Keg~eFM~ 233 (491)
T KOG2610|consen 183 FGLEECGIYDDAEKQADRALQIN-RFDC-------WASHAKAHVLEMNGRHKEGKEFMY 233 (491)
T ss_pred hhHHHhccchhHHHHHHhhccCC-Ccch-------HHHHHHHHHHHhcchhhhHHHHHH
Confidence 55666666666666666666665 5444 444555555555555555555443
No 215
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=97.51 E-value=0.00082 Score=69.58 Aligned_cols=138 Identities=17% Similarity=0.153 Sum_probs=102.4
Q ss_pred HHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCC------h-----
Q 008887 374 ALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTE------P----- 442 (550)
Q Consensus 374 ~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~------~----- 442 (550)
++.....+..+.+.-+++.++||+++|+++.++..|+.-. ..-..+|+++|+++++..+..-.... .
T Consensus 173 ~IMq~AWRERnp~aRIkaA~eALei~pdCAdAYILLAEEe--A~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~ 250 (539)
T PF04184_consen 173 EIMQKAWRERNPQARIKAAKEALEINPDCADAYILLAEEE--ASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAW 250 (539)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhhhhhhHHHhhccccc--ccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhh
Confidence 5566678888999999999999999999999999998632 24467777788777765421111110 0
Q ss_pred --hhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008887 443 --EAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAA 519 (550)
Q Consensus 443 --~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~ 519 (550)
.+...+..+...+|.|..+.|+.+||++.++..++.. |.. +...++.+|..++..+++|+++...+.+.-.
T Consensus 251 ~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~-p~~-----~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 251 HRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEF-PNL-----DNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred hccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhC-Ccc-----chhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 0111122356779999999999999999999999876 532 1336899999999999999999999887543
No 216
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=97.48 E-value=0.0059 Score=61.57 Aligned_cols=137 Identities=15% Similarity=0.151 Sum_probs=113.2
Q ss_pred HHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHH
Q 008887 371 ELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIV 450 (550)
Q Consensus 371 ~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~ 450 (550)
...+.|..-+..|+|.+|+.+..++-+-.+.-.-++..-+.+.-+.||++.|-.++.++.+. .+++. - .
T Consensus 86 ~~~~egl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~-----~~~~~-l----~- 154 (400)
T COG3071 86 KALNEGLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAEL-----AGDDT-L----A- 154 (400)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhcc-----CCCch-H----H-
Confidence 33477888899999999999999977666666667777788899999999999999999888 22222 1 1
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHH
Q 008887 451 ASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNE 526 (550)
Q Consensus 451 a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~ 526 (550)
.....+..+..+|+++.|..-..++++.. |..+ ++.....++|.+.|++.+....+.+.-+..--..+
T Consensus 155 v~ltrarlll~~~d~~aA~~~v~~ll~~~-pr~~-------~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~ 222 (400)
T COG3071 155 VELTRARLLLNRRDYPAARENVDQLLEMT-PRHP-------EVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDE 222 (400)
T ss_pred HHHHHHHHHHhCCCchhHHHHHHHHHHhC-cCCh-------HHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChH
Confidence 45568899999999999999999999998 9888 99999999999999999999998887776544333
No 217
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.44 E-value=0.00026 Score=45.92 Aligned_cols=33 Identities=24% Similarity=0.349 Sum_probs=30.5
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCc
Q 008887 492 DGLVVLASALCNVGRNAEAEKYLRLAAAHNPQY 524 (550)
Q Consensus 492 ~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~ 524 (550)
.+|+.+|.+|..+|++++|+..|+++++++|++
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 689999999999999999999999999999975
No 218
>PLN03077 Protein ECB2; Provisional
Probab=97.40 E-value=0.0023 Score=74.23 Aligned_cols=130 Identities=15% Similarity=0.137 Sum_probs=101.2
Q ss_pred HHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHH
Q 008887 374 ALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQ 453 (550)
Q Consensus 374 ~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~ 453 (550)
.+-..|.+.|+.++|.+.|++. +.+..+|+.+...|.+.|+.++|++.|++..+.. ..|+.. .+.
T Consensus 529 aLi~~y~k~G~~~~A~~~f~~~----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g---~~Pd~~--------T~~ 593 (857)
T PLN03077 529 ALLDLYVRCGRMNYAWNQFNSH----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESG---VNPDEV--------TFI 593 (857)
T ss_pred HHHHHHHHcCCHHHHHHHHHhc----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcC---CCCCcc--------cHH
Confidence 3446788899999999999886 5678899999999999999999999999987651 133332 445
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcH
Q 008887 454 WSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYN 525 (550)
Q Consensus 454 ~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~ 525 (550)
.+-.++.+.|+.++|.++|++..+.. .-.+ ....|..+..+|.+.|+.++|.+.+++. .+.|+..
T Consensus 594 ~ll~a~~~~g~v~ea~~~f~~M~~~~-gi~P-----~~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~pd~~ 658 (857)
T PLN03077 594 SLLCACSRSGMVTQGLEYFHSMEEKY-SITP-----NLKHYACVVDLLGRAGKLTEAYNFINKM-PITPDPA 658 (857)
T ss_pred HHHHHHhhcChHHHHHHHHHHHHHHh-CCCC-----chHHHHHHHHHHHhCCCHHHHHHHHHHC-CCCCCHH
Confidence 56677889999999999999987432 2222 1267889999999999999999999875 3556643
No 219
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.36 E-value=0.0036 Score=62.42 Aligned_cols=143 Identities=13% Similarity=0.015 Sum_probs=107.5
Q ss_pred HHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHH
Q 008887 374 ALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQ-KGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVAS 452 (550)
Q Consensus 374 ~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~-~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~ 452 (550)
.+.....+.+..+.|...|++|++..+.+...|...|.+-++ .++.+.|.+.|+.+++. .|.+. . .|
T Consensus 6 ~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-----f~~~~-~------~~ 73 (280)
T PF05843_consen 6 QYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-----FPSDP-D------FW 73 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-----HTT-H-H------HH
T ss_pred HHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-----CCCCH-H------HH
Confidence 445555666668899999999997777788999999999777 56666699999999999 66665 2 44
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHHHHHHH
Q 008887 453 QWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQLE 532 (550)
Q Consensus 453 ~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~l~ 532 (550)
......+...|+.+.|..+|++++..- +.+. +.-..|......-.+.|+.+......+++.+..|+.........
T Consensus 74 ~~Y~~~l~~~~d~~~aR~lfer~i~~l-~~~~----~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~~~~f~~ 148 (280)
T PF05843_consen 74 LEYLDFLIKLNDINNARALFERAISSL-PKEK----QSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDNSLELFSD 148 (280)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHCCTS-SCHH----HCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-HHHHHHC
T ss_pred HHHHHHHHHhCcHHHHHHHHHHHHHhc-Cchh----HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 556677889999999999999999875 4322 12257888888888999999999999999999988666555444
Q ss_pred h
Q 008887 533 N 533 (550)
Q Consensus 533 ~ 533 (550)
+
T Consensus 149 r 149 (280)
T PF05843_consen 149 R 149 (280)
T ss_dssp C
T ss_pred H
Confidence 3
No 220
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.33 E-value=0.00047 Score=44.51 Aligned_cols=33 Identities=24% Similarity=0.364 Sum_probs=30.5
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCc
Q 008887 492 DGLVVLASALCNVGRNAEAEKYLRLAAAHNPQY 524 (550)
Q Consensus 492 ~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~ 524 (550)
++++.+|.+|...|++++|+++++++++++|++
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 689999999999999999999999999999985
No 221
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=97.33 E-value=0.0008 Score=62.28 Aligned_cols=104 Identities=17% Similarity=0.133 Sum_probs=93.0
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCC
Q 008887 403 INALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPE 482 (550)
Q Consensus 403 ~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~ 482 (550)
+..++..|..|-..|-+.-|...|.+++.+ +|.-+ .+.+.+|..+...|+++.|.+.|+..++++ |.
T Consensus 65 A~l~fERGvlYDSlGL~~LAR~DftQaLai-----~P~m~-------~vfNyLG~Yl~~a~~fdaa~eaFds~~ELD-p~ 131 (297)
T COG4785 65 AQLLFERGVLYDSLGLRALARNDFSQALAI-----RPDMP-------EVFNYLGIYLTQAGNFDAAYEAFDSVLELD-PT 131 (297)
T ss_pred HHHHHHhcchhhhhhHHHHHhhhhhhhhhc-----CCCcH-------HHHHHHHHHHHhcccchHHHHHhhhHhccC-Cc
Confidence 456778899999999999999999999999 88777 377889999999999999999999999998 87
Q ss_pred CccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHH
Q 008887 483 EPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNE 526 (550)
Q Consensus 483 ~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~ 526 (550)
.. .++.+.|..+.--|++.-|.+.+.+-.+-+|+++-
T Consensus 132 y~-------Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPf 168 (297)
T COG4785 132 YN-------YAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPF 168 (297)
T ss_pred ch-------HHHhccceeeeecCchHhhHHHHHHHHhcCCCChH
Confidence 77 88999999988899999999999998888888764
No 222
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.32 E-value=0.0027 Score=56.52 Aligned_cols=113 Identities=24% Similarity=0.180 Sum_probs=73.2
Q ss_pred HHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHH-HHHHHHHHHHhhhcCCCCChhhHHHHHHHH
Q 008887 374 ALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEA-VEYLECAISKLFLAGHPTEPEAIDLLIVAS 452 (550)
Q Consensus 374 ~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA-~~~~~~al~l~~~~~~p~~~~~~~~l~~a~ 452 (550)
..|......|+.+.+++.+++++....++.-.-..- ..|-.. ...+++.. ..+.
T Consensus 11 ~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~-------~~W~~~~r~~l~~~~------------------~~~~ 65 (146)
T PF03704_consen 11 REARAAARAGDPEEAIELLEEALALYRGDFLPDLDD-------EEWVEPERERLRELY------------------LDAL 65 (146)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTT-------STTHHHHHHHHHHHH------------------HHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCc-------cHHHHHHHHHHHHHH------------------HHHH
Confidence 445555667777777888888877664432110000 122222 12221111 1144
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008887 453 QWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAA 519 (550)
Q Consensus 453 ~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~ 519 (550)
..++..+...|++++|+..+++++..+ |-+. .++..+-.+|...|++.+|.+.|++..+
T Consensus 66 ~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E-------~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 66 ERLAEALLEAGDYEEALRLLQRALALD-PYDE-------EAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-H-------HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHhcC-CCCH-------HHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 568888999999999999999999998 8877 8999999999999999999999998644
No 223
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.32 E-value=0.0023 Score=70.32 Aligned_cols=135 Identities=18% Similarity=0.167 Sum_probs=108.3
Q ss_pred HHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHH
Q 008887 378 KFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGV 457 (550)
Q Consensus 378 ~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~ 457 (550)
.....+++.+|++...+.++.+|+..-+....|.++.+.|+.++|..+++..-.. .+++. .....+-.
T Consensus 18 d~ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~-----~~~D~-------~tLq~l~~ 85 (932)
T KOG2053|consen 18 DLLDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGL-----KGTDD-------LTLQFLQN 85 (932)
T ss_pred HHhhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccC-----CCCch-------HHHHHHHH
Confidence 4577889999999999999999999999999999999999999999877655444 33322 14557889
Q ss_pred HHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHH-HHHHHHh
Q 008887 458 ACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNE-LLEQLEN 533 (550)
Q Consensus 458 ~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~-~~~~l~~ 533 (550)
||.++|++++|..+|++++..+ |. . +..+.+-++|.+.++|.+-.+.--+..+..|+.+- .|..++-
T Consensus 86 ~y~d~~~~d~~~~~Ye~~~~~~-P~-e-------ell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Sl 153 (932)
T KOG2053|consen 86 VYRDLGKLDEAVHLYERANQKY-PS-E-------ELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISL 153 (932)
T ss_pred HHHHHhhhhHHHHHHHHHHhhC-Cc-H-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHH
Confidence 9999999999999999999998 86 4 78888889999999998877665555556676665 3444443
No 224
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=97.31 E-value=0.0083 Score=68.84 Aligned_cols=130 Identities=16% Similarity=0.131 Sum_probs=117.3
Q ss_pred HHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHH
Q 008887 374 ALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQ 453 (550)
Q Consensus 374 ~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~ 453 (550)
.+...|...+++++|.++|++.++..-+....|..+|..++.+.+-++|...+.+|++- -|... +.+.+.
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~-----lPk~e-Hv~~Is---- 1604 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKS-----LPKQE-HVEFIS---- 1604 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh-----cchhh-hHHHHH----
Confidence 67788899999999999999999988888999999999999999999999999999998 56633 555555
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 008887 454 WSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHN 521 (550)
Q Consensus 454 ~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~ 521 (550)
..|..-++.|+.+.+...|+..+..+ |... +.|..+.+.-.+.|+.+.++..|++++.+.
T Consensus 1605 kfAqLEFk~GDaeRGRtlfEgll~ay-PKRt-------DlW~VYid~eik~~~~~~vR~lfeRvi~l~ 1664 (1710)
T KOG1070|consen 1605 KFAQLEFKYGDAERGRTLFEGLLSAY-PKRT-------DLWSVYIDMEIKHGDIKYVRDLFERVIELK 1664 (1710)
T ss_pred HHHHHHhhcCCchhhHHHHHHHHhhC-ccch-------hHHHHHHHHHHccCCHHHHHHHHHHHHhcC
Confidence 48899999999999999999999987 8777 999999999999999999999999999877
No 225
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=97.30 E-value=0.006 Score=56.48 Aligned_cols=126 Identities=30% Similarity=0.408 Sum_probs=108.4
Q ss_pred HHHHcCCCCChHHHHHHHHhhCC---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCC-hhhHHHHHHHHH
Q 008887 378 KFLSKGDKERPIPLLQLALNKEP---DNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTE-PEAIDLLIVASQ 453 (550)
Q Consensus 378 ~~~~~g~~~~A~~~~~~aL~~~p---~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~-~~~~~~l~~a~~ 453 (550)
.+...|++++|...+++++..+| .........+..+...+++++|+..+.+++.. .+.. . ..+.
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~-------~~~~ 206 (291)
T COG0457 139 ALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKL-----NPDDDA-------EALL 206 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhh-----Ccccch-------HHHH
Confidence 78999999999999999988776 45677778888889999999999999999999 4442 2 2566
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 008887 454 WSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQ 523 (550)
Q Consensus 454 ~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~ 523 (550)
.++.++...+++++|+..+.+++... +... ..+..++..+...|+.+++...+.+++..+|.
T Consensus 207 ~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 207 NLGLLYLKLGKYEEALEYYEKALELD-PDNA-------EALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred HhhHHHHHcccHHHHHHHHHHHHhhC-cccH-------HHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 79999999999999999999999997 6533 67778888888888899999999999999987
No 226
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=97.25 E-value=0.00046 Score=71.12 Aligned_cols=108 Identities=16% Similarity=0.155 Sum_probs=94.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCcc
Q 008887 406 LILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPK 485 (550)
Q Consensus 406 ~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~ 485 (550)
.-..+.-.+..++|+.|+..|.+|+++ +|+.. . .+-+.+.++.+.+++..|+..+.++++.+ |...
T Consensus 7 ~k~ean~~l~~~~fd~avdlysKaI~l-----dpnca-~------~~anRa~a~lK~e~~~~Al~Da~kaie~d-P~~~- 72 (476)
T KOG0376|consen 7 LKNEANEALKDKVFDVAVDLYSKAIEL-----DPNCA-I------YFANRALAHLKVESFGGALHDALKAIELD-PTYI- 72 (476)
T ss_pred hhhHHhhhcccchHHHHHHHHHHHHhc-----CCcce-e------eechhhhhheeechhhhHHHHHHhhhhcC-chhh-
Confidence 345677788889999999999999999 77665 2 34467889999999999999999999998 8766
Q ss_pred ccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHHHHHHHh
Q 008887 486 SKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQLEN 533 (550)
Q Consensus 486 ~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~l~~ 533 (550)
.+|+..|.+....+++.+|...|+....+.|+...+.+.+.+
T Consensus 73 ------K~Y~rrg~a~m~l~~~~~A~~~l~~~~~l~Pnd~~~~r~~~E 114 (476)
T KOG0376|consen 73 ------KAYVRRGTAVMALGEFKKALLDLEKVKKLAPNDPDATRKIDE 114 (476)
T ss_pred ------heeeeccHHHHhHHHHHHHHHHHHHhhhcCcCcHHHHHHHHH
Confidence 899999999999999999999999999999999998876654
No 227
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=97.19 E-value=0.0035 Score=62.29 Aligned_cols=141 Identities=15% Similarity=0.067 Sum_probs=108.7
Q ss_pred HHHHHHHHHHHcCCCCChHHHHHHHHhhC------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhh
Q 008887 371 ELIALSVKFLSKGDKERPIPLLQLALNKE------PDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEA 444 (550)
Q Consensus 371 ~l~~la~~~~~~g~~~~A~~~~~~aL~~~------p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~ 444 (550)
.++.++..+..+|++.+|.++.+++.++. +-+......+|.+|...||.+.|..-|+.|.......++.... .
T Consensus 208 ~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~gdrmgq-v 286 (518)
T KOG1941|consen 208 SLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMASLGDRMGQ-V 286 (518)
T ss_pred HHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhhhhhHHH-H
Confidence 56689999999999999999999998843 3356777889999999999999999999999885433333222 1
Q ss_pred HHHHHHHHHHHHHHHHHhcCHHH-----HHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008887 445 IDLLIVASQWSGVACIRQEKWEE-----GIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAA 519 (550)
Q Consensus 445 ~~~l~~a~~~lg~~~~~~g~~~e-----A~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~ 519 (550)
++.-..+.|+....-..+ |++.-.++++. .+..+.+.-....+..++.+|...|..|+-.+.+.++-+
T Consensus 287 -----~al~g~Akc~~~~r~~~k~~~Crale~n~r~lev--A~~IG~K~~vlK~hcrla~iYrs~gl~d~~~~h~~ra~~ 359 (518)
T KOG1941|consen 287 -----EALDGAAKCLETLRLQNKICNCRALEFNTRLLEV--ASSIGAKLSVLKLHCRLASIYRSKGLQDELRAHVVRAHE 359 (518)
T ss_pred -----HHHHHHHHHHHHHHHhhcccccchhHHHHHHHHH--HHHhhhhHHHHHHHHHHHHHHHhccchhHHHHHHHHHHH
Confidence 255567777766655555 99999999988 455555666678899999999999988887777766433
No 228
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.19 E-value=0.0083 Score=57.50 Aligned_cols=132 Identities=17% Similarity=0.165 Sum_probs=99.9
Q ss_pred HHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHH
Q 008887 375 LSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQ----KGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIV 450 (550)
Q Consensus 375 la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~----~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~ 450 (550)
-...+.+..+.+-|.+.+++..+.+.+ ..+..||..+.. .+++.+|.-.|++.-+. .+..+ .
T Consensus 143 ~VqI~lk~~r~d~A~~~lk~mq~ided--~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-----~~~T~-------~ 208 (299)
T KOG3081|consen 143 NVQILLKMHRFDLAEKELKKMQQIDED--ATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-----TPPTP-------L 208 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccchH--HHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-----cCCCh-------H
Confidence 345677888888899999998877655 445556555543 35677888888887664 33333 2
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHH-HHHHcCCCcHHHH
Q 008887 451 ASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLR-LAAAHNPQYNELL 528 (550)
Q Consensus 451 a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~-~al~~~p~~~~~~ 528 (550)
.....+.|++.+|++++|...++.++..+ ++++ +.+.++-.+-...|+.+++.+-+- +....+|+++-..
T Consensus 209 llnG~Av~~l~~~~~eeAe~lL~eaL~kd-~~dp-------etL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~~vk 279 (299)
T KOG3081|consen 209 LLNGQAVCHLQLGRYEEAESLLEEALDKD-AKDP-------ETLANLIVLALHLGKDAEVTERNLSQLKLSHPEHPFVK 279 (299)
T ss_pred HHccHHHHHHHhcCHHHHHHHHHHHHhcc-CCCH-------HHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCcchHHH
Confidence 66689999999999999999999999998 8888 999999999999999888776554 4445667766433
No 229
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.16 E-value=0.0011 Score=42.70 Aligned_cols=30 Identities=40% Similarity=0.517 Sum_probs=25.5
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 008887 403 INALILMGQTQLQKGLLEEAVEYLECAISK 432 (550)
Q Consensus 403 ~~a~~~lg~~~~~~g~~~eA~~~~~~al~l 432 (550)
+.+++.+|.++...|++++|+++|++++++
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 467888999999999999999999999988
No 230
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.16 E-value=0.00082 Score=43.50 Aligned_cols=30 Identities=33% Similarity=0.430 Sum_probs=26.0
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 008887 403 INALILMGQTQLQKGLLEEAVEYLECAISK 432 (550)
Q Consensus 403 ~~a~~~lg~~~~~~g~~~eA~~~~~~al~l 432 (550)
+.+++.+|.+|...|++++|+++|++++++
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 467889999999999999999999999998
No 231
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.11 E-value=0.0046 Score=59.97 Aligned_cols=129 Identities=15% Similarity=0.164 Sum_probs=97.5
Q ss_pred HHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHH
Q 008887 374 ALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQ 453 (550)
Q Consensus 374 ~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~ 453 (550)
-.+...+..+|+..+..+.++.- ..+++....+.|.+.++.|++++|++-|+.|++. .--++ ...|
T Consensus 117 LqaAIkYse~Dl~g~rsLveQlp--~en~Ad~~in~gCllykegqyEaAvqkFqaAlqv-----sGyqp-------llAY 182 (459)
T KOG4340|consen 117 LQAAIKYSEGDLPGSRSLVEQLP--SENEADGQINLGCLLYKEGQYEAAVQKFQAALQV-----SGYQP-------LLAY 182 (459)
T ss_pred HHHHHhcccccCcchHHHHHhcc--CCCccchhccchheeeccccHHHHHHHHHHHHhh-----cCCCc-------hhHH
Confidence 45566778889998888777641 1256788899999999999999999999999999 33333 1556
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccc---------------------cchhHHHHHHHHHHhcCCHHHHHH
Q 008887 454 WSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKA---------------------HYYDGLVVLASALCNVGRNAEAEK 512 (550)
Q Consensus 454 ~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~---------------------~~~~~~~~La~~~~~~g~~~eA~~ 512 (550)
+++.|+++.|+++.|+++..+.++..-.+.++-.. ...++....+-++++.|+++.|.+
T Consensus 183 niALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~e 262 (459)
T KOG4340|consen 183 NLALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQE 262 (459)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHH
Confidence 89999999999999999998888764111111110 145677788889999999999988
Q ss_pred HHHH
Q 008887 513 YLRL 516 (550)
Q Consensus 513 ~l~~ 516 (550)
.+..
T Consensus 263 aLtD 266 (459)
T KOG4340|consen 263 ALTD 266 (459)
T ss_pred Hhhc
Confidence 7653
No 232
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.10 E-value=0.00036 Score=45.35 Aligned_cols=34 Identities=24% Similarity=0.259 Sum_probs=31.1
Q ss_pred HHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHH
Q 008887 471 HLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEK 512 (550)
Q Consensus 471 ~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~ 512 (550)
+|+++++++ |+++ .+|+++|.+|...|++++|++
T Consensus 1 ~y~kAie~~-P~n~-------~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIELN-PNNA-------EAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred ChHHHHHHC-CCCH-------HHHHHHHHHHHHCcCHHhhcC
Confidence 378999998 9998 999999999999999999973
No 233
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.09 E-value=0.0084 Score=56.68 Aligned_cols=136 Identities=15% Similarity=0.103 Sum_probs=99.1
Q ss_pred HHHHHHHHHcCCCCChHHHHHHHHhhCCCC------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHH
Q 008887 373 IALSVKFLSKGDKERPIPLLQLALNKEPDN------INALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAID 446 (550)
Q Consensus 373 ~~la~~~~~~g~~~~A~~~~~~aL~~~p~~------~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~ 446 (550)
...+..|...+++++|...+.+|.+-+..+ +.++-..|........+.|+..+|++|..+..+.|.|+....
T Consensus 35 ekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~GspdtAAm-- 112 (308)
T KOG1585|consen 35 EKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDTAAM-- 112 (308)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchHHH--
Confidence 366778888899999999999999744332 345667778888899999999999999999887777776522
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008887 447 LLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLA 517 (550)
Q Consensus 447 ~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~a 517 (550)
+.-..|. ..+.-+.++|++.|++++..- ..+..++. -.+.+-..+++|.+..+++||-..+.+-
T Consensus 113 ----aleKAak-~lenv~Pd~AlqlYqralavv-e~~dr~~m-a~el~gk~sr~lVrl~kf~Eaa~a~lKe 176 (308)
T KOG1585|consen 113 ----ALEKAAK-ALENVKPDDALQLYQRALAVV-EEDDRDQM-AFELYGKCSRVLVRLEKFTEAATAFLKE 176 (308)
T ss_pred ----HHHHHHH-HhhcCCHHHHHHHHHHHHHHH-hccchHHH-HHHHHHHhhhHhhhhHHhhHHHHHHHHh
Confidence 2333333 456789999999999998875 33322221 2355666777888888888888776653
No 234
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.06 E-value=0.00059 Score=67.33 Aligned_cols=125 Identities=18% Similarity=0.203 Sum_probs=96.8
Q ss_pred HHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHH
Q 008887 374 ALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQ 453 (550)
Q Consensus 374 ~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~ 453 (550)
..|...+..|++++|+++|..+++++|.....+...+.++.+.++...|+..+..++++ +|+... -|-
T Consensus 119 ~~A~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ei-----n~Dsa~-------~yk 186 (377)
T KOG1308|consen 119 VQASEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEI-----NPDSAK-------GYK 186 (377)
T ss_pred HHHHHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhcc-----Cccccc-------ccc
Confidence 46668899999999999999999999999999999999999999999999999999999 666551 344
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008887 454 WSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAA 519 (550)
Q Consensus 454 ~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~ 519 (550)
..|.+...+|++++|..+++.+.+++ - +. .+-..+-.+.-..+..++-...+++..+
T Consensus 187 frg~A~rllg~~e~aa~dl~~a~kld-~-dE-------~~~a~lKeV~p~a~ki~e~~~k~er~~~ 243 (377)
T KOG1308|consen 187 FRGYAERLLGNWEEAAHDLALACKLD-Y-DE-------ANSATLKEVFPNAGKIEEHRRKYERARE 243 (377)
T ss_pred hhhHHHHHhhchHHHHHHHHHHHhcc-c-cH-------HHHHHHHHhccchhhhhhchhHHHHHHH
Confidence 67888889999999999999999986 2 22 2333344444444444444444444443
No 235
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.05 E-value=0.0079 Score=56.82 Aligned_cols=100 Identities=19% Similarity=0.132 Sum_probs=86.3
Q ss_pred HHHHHHHHHHHcCCCCChHHHHHHHHh--------hCCCC----------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 008887 371 ELIALSVKFLSKGDKERPIPLLQLALN--------KEPDN----------INALILMGQTQLQKGLLEEAVEYLECAISK 432 (550)
Q Consensus 371 ~l~~la~~~~~~g~~~~A~~~~~~aL~--------~~p~~----------~~a~~~lg~~~~~~g~~~eA~~~~~~al~l 432 (550)
.+.+.|..++..|+|.+|...|+.|+. ..|.. ...+.++.++++..|+|-+++++....+..
T Consensus 180 ~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~ 259 (329)
T KOG0545|consen 180 VLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRH 259 (329)
T ss_pred HHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhc
Confidence 556899999999999999999999976 23443 346788999999999999999999999999
Q ss_pred hhhcCCCCChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCC
Q 008887 433 LFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEE 483 (550)
Q Consensus 433 ~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~ 483 (550)
+|++. .+++..|.+....=+.++|.+.|.++++++ |.-
T Consensus 260 -----~~~nv-------KA~frRakAhaa~Wn~~eA~~D~~~vL~ld-psl 297 (329)
T KOG0545|consen 260 -----HPGNV-------KAYFRRAKAHAAVWNEAEAKADLQKVLELD-PSL 297 (329)
T ss_pred -----CCchH-------HHHHHHHHHHHhhcCHHHHHHHHHHHHhcC-hhh
Confidence 77665 388899999999999999999999999997 643
No 236
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.03 E-value=0.0033 Score=64.71 Aligned_cols=157 Identities=14% Similarity=0.039 Sum_probs=114.7
Q ss_pred HHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHH
Q 008887 374 ALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQ 453 (550)
Q Consensus 374 ~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~ 453 (550)
.....++...+...+....+.++....+.+.+.....+.++..|++.+|.+.+-.. .+....+.--.+ .-.. +.+|+
T Consensus 211 ykVr~llq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~s-ni~~~~g~~~T~-q~~~-cif~N 287 (696)
T KOG2471|consen 211 YKVRFLLQTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKAMKLLLVS-NIHKEAGGTITP-QLSS-CIFNN 287 (696)
T ss_pred hhHHHHHHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHHHHHHHhc-ccccccCccccc-hhhh-heeec
Confidence 34445666677777777777777788899999999999999999999999876432 111111111121 1111 12788
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHhcC----------CCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 008887 454 WSGVACIRQEKWEEGIAHLERIGNL----------KEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQ 523 (550)
Q Consensus 454 ~lg~~~~~~g~~~eA~~~~~~al~~----------~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~ 523 (550)
++|.++++.|.|.-+..+|.++++. ..+.+.-......+..|+.|..|...|+.-.|.++|.++...--.
T Consensus 288 NlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~ 367 (696)
T KOG2471|consen 288 NLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHR 367 (696)
T ss_pred CcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999961 012222222235689999999999999999999999999998888
Q ss_pred cHHHHHHHHh
Q 008887 524 YNELLEQLEN 533 (550)
Q Consensus 524 ~~~~~~~l~~ 533 (550)
++..|-++.+
T Consensus 368 nPrlWLRlAE 377 (696)
T KOG2471|consen 368 NPRLWLRLAE 377 (696)
T ss_pred CcHHHHHHHH
Confidence 8888877655
No 237
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=96.95 E-value=0.017 Score=48.38 Aligned_cols=104 Identities=16% Similarity=0.137 Sum_probs=77.7
Q ss_pred HHHHHHHHcCCCCChHHHHHHHHhhC---C-C--------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCC
Q 008887 374 ALSVKFLSKGDKERPIPLLQLALNKE---P-D--------NINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTE 441 (550)
Q Consensus 374 ~la~~~~~~g~~~~A~~~~~~aL~~~---p-~--------~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~ 441 (550)
..|...+..|.|++|...+++|++.. | . +.-++-.|+.++...|+|++++...++++...-.-+.-..
T Consensus 14 s~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~q 93 (144)
T PF12968_consen 14 SDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQ 93 (144)
T ss_dssp HHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTS
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhcccccc
Confidence 45567788899999999999999853 1 1 4667889999999999999999998888866322222223
Q ss_pred hhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcC
Q 008887 442 PEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNL 478 (550)
Q Consensus 442 ~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~ 478 (550)
. ....++.+.++.+.++...|+.++|+..|+.+-+.
T Consensus 94 d-eGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 94 D-EGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp T-HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred c-cchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 3 44555568889999999999999999999988764
No 238
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=96.86 E-value=0.0018 Score=41.84 Aligned_cols=33 Identities=24% Similarity=0.313 Sum_probs=30.4
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCc
Q 008887 492 DGLVVLASALCNVGRNAEAEKYLRLAAAHNPQY 524 (550)
Q Consensus 492 ~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~ 524 (550)
.+++.+|.+|.++|++++|.++|+++++++|++
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~n 34 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 679999999999999999999999999999853
No 239
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=96.84 E-value=0.027 Score=55.65 Aligned_cols=96 Identities=15% Similarity=0.103 Sum_probs=85.3
Q ss_pred HHHHHHHHHHcCCCCChHHHHHHHHhhCCC----ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHH
Q 008887 372 LIALSVKFLSKGDKERPIPLLQLALNKEPD----NINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDL 447 (550)
Q Consensus 372 l~~la~~~~~~g~~~~A~~~~~~aL~~~p~----~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~ 447 (550)
.-+.|..|+..++|..|+..|.+.|+..-. ++.+|.+.+-+....|+|..|+....+++.+ +|.+.
T Consensus 84 ~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~-----~P~h~----- 153 (390)
T KOG0551|consen 84 YKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKL-----KPTHL----- 153 (390)
T ss_pred HHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhc-----Ccchh-----
Confidence 338899999999999999999999996533 3566789999999999999999999999999 88877
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCC
Q 008887 448 LIVASQWSGVACIRQEKWEEGIAHLERIGNLK 479 (550)
Q Consensus 448 l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~ 479 (550)
.+++.-+.|++++.++++|..++++.++.+
T Consensus 154 --Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d 183 (390)
T KOG0551|consen 154 --KAYIRGAKCLLELERFAEAVNWCEEGLQID 183 (390)
T ss_pred --hhhhhhhHHHHHHHHHHHHHHHHhhhhhhh
Confidence 378888999999999999999999988875
No 240
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.79 E-value=0.34 Score=49.14 Aligned_cols=22 Identities=14% Similarity=0.330 Sum_probs=15.4
Q ss_pred hhhhhHHHHHhhhhHHHHHHHH
Q 008887 297 YIPQGSLVYWVTNSSFSIVQQL 318 (550)
Q Consensus 297 ~~p~~l~lYw~~s~~~~~~q~~ 318 (550)
.+...+++||++.+++.--+..
T Consensus 51 ~vaav~llwwlv~~iw~sP~t~ 72 (531)
T COG3898 51 LVAAVLLLWWLVRSIWESPYTA 72 (531)
T ss_pred HHHHHHHHHHHHHHHHhCcHHH
Confidence 4556778899988887655443
No 241
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=96.77 E-value=0.061 Score=55.56 Aligned_cols=163 Identities=12% Similarity=0.010 Sum_probs=118.4
Q ss_pred CccCCCChHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHH-------HHHHHH---HHcCCHHHHHHHHHHHHH
Q 008887 362 ISVENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALI-------LMGQTQ---LQKGLLEEAVEYLECAIS 431 (550)
Q Consensus 362 ~~~~~l~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~-------~lg~~~---~~~g~~~eA~~~~~~al~ 431 (550)
++....+-+..+..-...-..|+.++-.+.|++|+..-|-..+-.+ .+-.++ ....|.+.+.+.|+.+++
T Consensus 315 v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~ 394 (677)
T KOG1915|consen 315 VSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLD 394 (677)
T ss_pred HHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 3333456677777777777789999999999999997765433222 222222 367899999999999999
Q ss_pred HhhhcCCCCChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHH
Q 008887 432 KLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAE 511 (550)
Q Consensus 432 l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~ 511 (550)
+ -|...- .....|...|.-..++.+...|.+.+..|+-.. |.+. .....-.+-.+++++|...
T Consensus 395 l-----IPHkkF---tFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~c-PK~K--------lFk~YIelElqL~efDRcR 457 (677)
T KOG1915|consen 395 L-----IPHKKF---TFAKIWLMYAQFEIRQLNLTGARKILGNAIGKC-PKDK--------LFKGYIELELQLREFDRCR 457 (677)
T ss_pred h-----cCcccc---hHHHHHHHHHHHHHHHcccHHHHHHHHHHhccC-Cchh--------HHHHHHHHHHHHhhHHHHH
Confidence 9 454331 112256667777888999999999999999888 7554 4444556667888999999
Q ss_pred HHHHHHHHcCCCcHHHHHHHHhhHHHHHhhh
Q 008887 512 KYLRLAAAHNPQYNELLEQLENNDEEFVSDL 542 (550)
Q Consensus 512 ~~l~~al~~~p~~~~~~~~l~~~~~~~~~~l 542 (550)
..|++-++..|.+...|....+ .++.+.|-
T Consensus 458 kLYEkfle~~Pe~c~~W~kyaE-lE~~Lgdt 487 (677)
T KOG1915|consen 458 KLYEKFLEFSPENCYAWSKYAE-LETSLGDT 487 (677)
T ss_pred HHHHHHHhcChHhhHHHHHHHH-HHHHhhhH
Confidence 9999999999999998888777 55554443
No 242
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.75 E-value=0.17 Score=45.54 Aligned_cols=147 Identities=13% Similarity=0.112 Sum_probs=107.8
Q ss_pred HHHHHHHHHHHcCCCCChHHHHHHHHhhCCCC--hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHH
Q 008887 371 ELIALSVKFLSKGDKERPIPLLQLALNKEPDN--INALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLL 448 (550)
Q Consensus 371 ~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~--~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l 448 (550)
+.+..+....+.++.++|+..|...-+..-+. .-+.+..|.+..+.|+..+|+.+|.++-... -.|.-..+
T Consensus 60 d~flaAL~lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt---~~P~~~rd---- 132 (221)
T COG4649 60 DAFLAALKLAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADT---SIPQIGRD---- 132 (221)
T ss_pred HHHHHHHHHHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccC---CCcchhhH----
Confidence 45677788889999999999999987765444 3466788999999999999999999886551 12222211
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHHH
Q 008887 449 IVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELL 528 (550)
Q Consensus 449 ~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~ 528 (550)
.+...-+..+...|.|++-....+..-.- .++ ....+...||.+.++.|++.+|...|..... +.+.++..
T Consensus 133 -~ARlraa~lLvD~gsy~dV~srvepLa~d---~n~----mR~sArEALglAa~kagd~a~A~~~F~qia~-Da~aprni 203 (221)
T COG4649 133 -LARLRAAYLLVDNGSYDDVSSRVEPLAGD---GNP----MRHSAREALGLAAYKAGDFAKAKSWFVQIAN-DAQAPRNI 203 (221)
T ss_pred -HHHHHHHHHHhccccHHHHHHHhhhccCC---CCh----hHHHHHHHHhHHHHhccchHHHHHHHHHHHc-cccCcHHH
Confidence 25566788899999999988777653322 222 3447888999999999999999999998776 54444444
Q ss_pred HHHHh
Q 008887 529 EQLEN 533 (550)
Q Consensus 529 ~~l~~ 533 (550)
.+-.+
T Consensus 204 rqRAq 208 (221)
T COG4649 204 RQRAQ 208 (221)
T ss_pred HHHHH
Confidence 44333
No 243
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.74 E-value=0.002 Score=66.28 Aligned_cols=128 Identities=13% Similarity=0.086 Sum_probs=94.8
Q ss_pred ChHHHHHHHHHHHHcCCCCChHHHHHHH-HhhCCC--------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh---hh
Q 008887 368 TPKELIALSVKFLSKGDKERPIPLLQLA-LNKEPD--------NINALILMGQTQLQKGLLEEAVEYLECAISKL---FL 435 (550)
Q Consensus 368 ~~~~l~~la~~~~~~g~~~~A~~~~~~a-L~~~p~--------~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~---~~ 435 (550)
++..++-.+..++..|++.+|.+++... +...+. ....++++|.++++.|.|..+..+|.+|++-. ..
T Consensus 239 s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~ 318 (696)
T KOG2471|consen 239 SSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLR 318 (696)
T ss_pred CcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHh
Confidence 5566777888999999999999887654 333343 23456899999999999999999999999610 00
Q ss_pred cC---CCCChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHh
Q 008887 436 AG---HPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCN 503 (550)
Q Consensus 436 ~~---~p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~ 503 (550)
.+ .+........-.+..|+.|..|...|+...|.++|.++.... ..+| ..|..+|+|...
T Consensus 319 ~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vf-h~nP-------rlWLRlAEcCim 381 (696)
T KOG2471|consen 319 NGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVF-HRNP-------RLWLRLAECCIM 381 (696)
T ss_pred ccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHH-hcCc-------HHHHHHHHHHHH
Confidence 01 111110111112377899999999999999999999999987 7777 999999999753
No 244
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=96.72 E-value=0.027 Score=47.22 Aligned_cols=108 Identities=21% Similarity=0.169 Sum_probs=71.2
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCCh--hhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCcccc
Q 008887 410 GQTQLQKGLLEEAVEYLECAISKLFLAGHPTEP--EAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSK 487 (550)
Q Consensus 410 g~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~--~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~ 487 (550)
|.-.++.|-|++|...++++++..+- -|... ++..+-..++-.|+.++..+|+|++++..-++++... .+..+.+
T Consensus 16 ae~ql~~g~~~eAa~s~r~AM~~srt--iP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YF-NRRGEL~ 92 (144)
T PF12968_consen 16 AERQLQDGAYEEAAASCRKAMEVSRT--IPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYF-NRRGELH 92 (144)
T ss_dssp HHHHHHHT-HHHHHHHHHHHHHHHTT--S-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH-HHH--TT
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHhcc--CChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHH-hhccccc
Confidence 44556779999999999999988421 22211 1222222356778889999999999988877777543 2211111
Q ss_pred c----cchhHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 008887 488 A----HYYDGLVVLASALCNVGRNAEAEKYLRLAAAH 520 (550)
Q Consensus 488 ~----~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~ 520 (550)
. ..+.+.+..|.++...|+.++|...|+.+-++
T Consensus 93 qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 93 QDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp STHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred cccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 1 23456778899999999999999999987654
No 245
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=96.72 E-value=0.024 Score=58.38 Aligned_cols=131 Identities=12% Similarity=0.039 Sum_probs=95.8
Q ss_pred HHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHH
Q 008887 372 LIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVA 451 (550)
Q Consensus 372 l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a 451 (550)
....|.--..++++..|.+.+++||..+..+...|...+..-++.+....|...+++|+.+ -|.-. ..
T Consensus 76 WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~-----lPRVd-------ql 143 (677)
T KOG1915|consen 76 WIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI-----LPRVD-------QL 143 (677)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh-----cchHH-------HH
Confidence 3456666677888999999999999999999999999999999999999999999999999 33332 25
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 008887 452 SQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQ 523 (550)
Q Consensus 452 ~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~ 523 (550)
|+..-..-...|+...|.+.|++-++.. |+. .+|...-..-.+..+.+.|...|++-+-.+|+
T Consensus 144 WyKY~ymEE~LgNi~gaRqiferW~~w~-P~e--------qaW~sfI~fElRykeieraR~IYerfV~~HP~ 206 (677)
T KOG1915|consen 144 WYKYIYMEEMLGNIAGARQIFERWMEWE-PDE--------QAWLSFIKFELRYKEIERARSIYERFVLVHPK 206 (677)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHcCC-CcH--------HHHHHHHHHHHHhhHHHHHHHHHHHHheeccc
Confidence 5566666677899999999999988886 643 24444444444444444444444444444444
No 246
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=96.72 E-value=0.0088 Score=43.07 Aligned_cols=43 Identities=21% Similarity=0.186 Sum_probs=36.5
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHHHHHHHhh
Q 008887 492 DGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQLENN 534 (550)
Q Consensus 492 ~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~l~~~ 534 (550)
+.++.+|..+.++|+|++|.++.+.+++++|++.++....+.+
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i 44 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELI 44 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Confidence 5688999999999999999999999999999999987766553
No 247
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.71 E-value=0.026 Score=53.12 Aligned_cols=149 Identities=17% Similarity=0.062 Sum_probs=96.5
Q ss_pred hHHHH-HHHHHHHHcCCCCChHHHHHHHHhhC-----CCCh-HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCC
Q 008887 369 PKELI-ALSVKFLSKGDKERPIPLLQLALNKE-----PDNI-NALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTE 441 (550)
Q Consensus 369 ~~~l~-~la~~~~~~g~~~~A~~~~~~aL~~~-----p~~~-~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~ 441 (550)
+.+++ ..|..|...++.+.|-..|.++-+.+ .++. .++..-+.+ ++.++.++|+.++++++++...-|.-+.
T Consensus 33 Aadl~~~Aan~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~c-ykk~~~~eAv~cL~~aieIyt~~Grf~~ 111 (288)
T KOG1586|consen 33 AAELYERAANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANC-YKKVDPEEAVNCLEKAIEIYTDMGRFTM 111 (288)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHH-hhccChHHHHHHHHHHHHHHHhhhHHHH
Confidence 33444 45556666677777777777775532 2233 444444444 4666999999999999999422111111
Q ss_pred hhhHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 008887 442 PEAIDLLIVASQWSGVACIRQ-EKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAH 520 (550)
Q Consensus 442 ~~~~~~l~~a~~~lg~~~~~~-g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~ 520 (550)
-...+..+|..|... .++++|+.+|+.+-+.. ..+... ..-...+...|....++++|.+|+..|+++.+.
T Consensus 112 ------aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~y-k~ees~-ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~ 183 (288)
T KOG1586|consen 112 ------AAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYY-KGEESV-SSANKCLLKVAQYAAQLEQYSKAIDIYEQVARS 183 (288)
T ss_pred ------HHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHH-cchhhh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111344577777655 89999999999998765 322211 112245666777778999999999999998876
Q ss_pred CCCcHH
Q 008887 521 NPQYNE 526 (550)
Q Consensus 521 ~p~~~~ 526 (550)
.-++.-
T Consensus 184 s~~n~L 189 (288)
T KOG1586|consen 184 SLDNNL 189 (288)
T ss_pred hccchH
Confidence 655544
No 248
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.69 E-value=0.063 Score=55.61 Aligned_cols=138 Identities=20% Similarity=0.122 Sum_probs=103.6
Q ss_pred HHHHHHHHcCCCCChHHHHHHHHhh---CCC-------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChh
Q 008887 374 ALSVKFLSKGDKERPIPLLQLALNK---EPD-------NINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPE 443 (550)
Q Consensus 374 ~la~~~~~~g~~~~A~~~~~~aL~~---~p~-------~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~ 443 (550)
.++....-.|++.+|++....+.+- .|. .+..++.+|.....-+.++.|...|..|.++ .+
T Consensus 328 ~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~---------t~ 398 (629)
T KOG2300|consen 328 HIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKL---------TE 398 (629)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHh---------hh
Confidence 5677788899999999998888773 343 4567788999999999999999999999998 33
Q ss_pred hHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 008887 444 AIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHN 521 (550)
Q Consensus 444 ~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~ 521 (550)
..+.......++|..|.+.|+-+.--+.++..-..+ ......+.-.+.+++..|-..+..+++.||...+++.+++.
T Consensus 399 ~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld~i~p~n-t~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkma 475 (629)
T KOG2300|consen 399 SIDLQAFCNLNLAISYLRIGDAEDLYKALDLIGPLN-TNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMA 475 (629)
T ss_pred HHHHHHHHHHhHHHHHHHhccHHHHHHHHHhcCCCC-CCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc
Confidence 444455577889999999888776666655532221 11111112245678888888899999999999999999976
No 249
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=96.61 E-value=0.043 Score=63.34 Aligned_cols=133 Identities=16% Similarity=0.057 Sum_probs=82.1
Q ss_pred CCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHH----------
Q 008887 385 KERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQW---------- 454 (550)
Q Consensus 385 ~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~---------- 454 (550)
-.+..+.|++.+.-+|+..-.|..+=....+.++.++|.+.+++|+..- |++..++...++.|+.|
T Consensus 1440 ~pesaeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tI----N~REeeEKLNiWiA~lNlEn~yG~ees 1515 (1710)
T KOG1070|consen 1440 APESAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTI----NFREEEEKLNIWIAYLNLENAYGTEES 1515 (1710)
T ss_pred CCcCHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhC----CcchhHHHHHHHHHHHhHHHhhCcHHH
Confidence 3345556666666667766666666666666677777777776666552 44444333333333333
Q ss_pred --------------------HHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHH
Q 008887 455 --------------------SGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYL 514 (550)
Q Consensus 455 --------------------lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l 514 (550)
|...|...+++++|.++++..++.. .+.. ..|..+|..+.++.+-++|...+
T Consensus 1516 l~kVFeRAcqycd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF-~q~~-------~vW~~y~~fLl~~ne~~aa~~lL 1587 (1710)
T KOG1070|consen 1516 LKKVFERACQYCDAYTVHLKLLGIYEKSEKNDEADELLRLMLKKF-GQTR-------KVWIMYADFLLRQNEAEAARELL 1587 (1710)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHhhcchhHHHHHHHHHHHh-cchh-------hHHHHHHHHHhcccHHHHHHHHH
Confidence 4455556667777777777766664 3333 67777777777777777777777
Q ss_pred HHHHHcCCC--cHHHHH
Q 008887 515 RLAAAHNPQ--YNELLE 529 (550)
Q Consensus 515 ~~al~~~p~--~~~~~~ 529 (550)
.+|++--|. |.+...
T Consensus 1588 ~rAL~~lPk~eHv~~Is 1604 (1710)
T KOG1070|consen 1588 KRALKSLPKQEHVEFIS 1604 (1710)
T ss_pred HHHHhhcchhhhHHHHH
Confidence 777776666 444443
No 250
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.50 E-value=0.062 Score=55.05 Aligned_cols=149 Identities=19% Similarity=0.176 Sum_probs=99.6
Q ss_pred hHHHHHHHHHHHH---cCCCCChHHHHHHHHh-hCCCChHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHHhhh
Q 008887 369 PKELIALSVKFLS---KGDKERPIPLLQLALN-KEPDNINALILMGQTQLQK---------GLLEEAVEYLECAISKLFL 435 (550)
Q Consensus 369 ~~~l~~la~~~~~---~g~~~~A~~~~~~aL~-~~p~~~~a~~~lg~~~~~~---------g~~~eA~~~~~~al~l~~~ 435 (550)
+...+..|.++.+ .|+.++|++.+..++. ..+.+++.+...|.+|-.. ...++|++.|+++.+.
T Consensus 179 ~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~--- 255 (374)
T PF13281_consen 179 HNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEI--- 255 (374)
T ss_pred hHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcC---
Confidence 3344577777877 8999999999999554 5677889999999888432 3467899999999999
Q ss_pred cCCCCChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHh----c-CCCCCCccccccchhHHHHHHHHHHhcCCHHHH
Q 008887 436 AGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIG----N-LKEPEEPKSKAHYYDGLVVLASALCNVGRNAEA 510 (550)
Q Consensus 436 ~~~p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al----~-~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA 510 (550)
+|+.- .=.|++.++...|.-.+.....++.. . .....+... ......+..++.+..-.|++++|
T Consensus 256 --~~~~Y--------~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~-~~dYWd~ATl~Ea~vL~~d~~ka 324 (374)
T PF13281_consen 256 --EPDYY--------SGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEK-MQDYWDVATLLEASVLAGDYEKA 324 (374)
T ss_pred --Ccccc--------chHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccc-cccHHHHHHHHHHHHHcCCHHHH
Confidence 54332 22367777777776554443333322 0 000111111 12234566778888889999999
Q ss_pred HHHHHHHHHcCCCcHHHHHHH
Q 008887 511 EKYLRLAAAHNPQYNELLEQL 531 (550)
Q Consensus 511 ~~~l~~al~~~p~~~~~~~~l 531 (550)
.++++++++.+|..=+....+
T Consensus 325 ~~a~e~~~~l~~~~W~l~St~ 345 (374)
T PF13281_consen 325 IQAAEKAFKLKPPAWELESTL 345 (374)
T ss_pred HHHHHHHhhcCCcchhHHHHH
Confidence 999999999987654433333
No 251
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.50 E-value=0.026 Score=53.96 Aligned_cols=104 Identities=16% Similarity=0.187 Sum_probs=87.2
Q ss_pred ChHHHHHHHHHHHHcCCCCChHHHHHHHHhhC------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCC
Q 008887 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKE------PDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTE 441 (550)
Q Consensus 368 ~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~------p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~ 441 (550)
+|.-+..+|...++.||.+.|..+|++.-+.. ..+.....+.+.+|...+++.+|...|.++++. +|.+
T Consensus 211 ~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~-----D~~~ 285 (366)
T KOG2796|consen 211 EPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRM-----DPRN 285 (366)
T ss_pred cHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhcccc-----CCCc
Confidence 44445589999999999999999999665532 334567778899999999999999999999999 8888
Q ss_pred hhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCc
Q 008887 442 PEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEP 484 (550)
Q Consensus 442 ~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~ 484 (550)
+ . +.++-|.|+...|+..+|++..+.+++.. |...
T Consensus 286 ~-~------a~NnKALcllYlg~l~DAiK~~e~~~~~~-P~~~ 320 (366)
T KOG2796|consen 286 A-V------ANNNKALCLLYLGKLKDALKQLEAMVQQD-PRHY 320 (366)
T ss_pred h-h------hhchHHHHHHHHHHHHHHHHHHHHHhccC-Cccc
Confidence 7 3 77789999999999999999999999987 7554
No 252
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=96.37 E-value=0.035 Score=51.18 Aligned_cols=106 Identities=17% Similarity=-0.035 Sum_probs=81.6
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCC
Q 008887 403 INALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPE 482 (550)
Q Consensus 403 ~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~ 482 (550)
..++..+|..|.+.||.++|+++|.++.+. ..... .....+.++-.+.+..|++.....+..++-.. ++
T Consensus 36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~-----~~~~~----~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~--~~ 104 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDLEEALKAYSRARDY-----CTSPG----HKIDMCLNVIRVAIFFGDWSHVEKYIEKAESL--IE 104 (177)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhh-----cCCHH----HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--Hh
Confidence 467889999999999999999999998766 22222 22235667888888999999999999998877 44
Q ss_pred CccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008887 483 EPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAA 519 (550)
Q Consensus 483 ~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~ 519 (550)
..+++.........-|..+...|+|.+|.+.|-.+..
T Consensus 105 ~~~d~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~ 141 (177)
T PF10602_consen 105 KGGDWERRNRLKVYEGLANLAQRDFKEAAELFLDSLS 141 (177)
T ss_pred ccchHHHHHHHHHHHHHHHHHhchHHHHHHHHHccCc
Confidence 4444555555666777778889999999998876654
No 253
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=96.32 E-value=0.0079 Score=38.68 Aligned_cols=29 Identities=38% Similarity=0.432 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 008887 404 NALILMGQTQLQKGLLEEAVEYLECAISK 432 (550)
Q Consensus 404 ~a~~~lg~~~~~~g~~~eA~~~~~~al~l 432 (550)
++++.+|.+|...|++++|.++|++++++
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~ 30 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 57889999999999999999999999998
No 254
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=96.25 E-value=0.085 Score=50.22 Aligned_cols=105 Identities=11% Similarity=0.010 Sum_probs=69.5
Q ss_pred HHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHHhcCH-------HHHHHHHHHHhcCCCCCCccc
Q 008887 414 LQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKW-------EEGIAHLERIGNLKEPEEPKS 486 (550)
Q Consensus 414 ~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~g~~-------~eA~~~~~~al~~~~p~~~~~ 486 (550)
.....+++|++.|.-|+--....+.+.. .....+..+|.+|...|+. .+|++.|+++++.. +.+..
T Consensus 88 ~~~Rt~~~ai~~YkLAll~~~~~~~~~s-----~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e--~~~~~ 160 (214)
T PF09986_consen 88 SGERTLEEAIESYKLALLCAQIKKEKPS-----KKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENE--DFPIE 160 (214)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhCCCHH-----HHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhC--cCCCC
Confidence 3455677777777766655322211111 1223555688888888874 46667777777663 33333
Q ss_pred cccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcH
Q 008887 487 KAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYN 525 (550)
Q Consensus 487 ~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~ 525 (550)
........+.+|.++.+.|++++|.+.+.+++.......
T Consensus 161 ~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s~ 199 (214)
T PF09986_consen 161 GMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKASK 199 (214)
T ss_pred CchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCCC
Confidence 344557899999999999999999999999998654443
No 255
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=96.24 E-value=0.0075 Score=38.36 Aligned_cols=33 Identities=27% Similarity=0.370 Sum_probs=30.5
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCc
Q 008887 492 DGLVVLASALCNVGRNAEAEKYLRLAAAHNPQY 524 (550)
Q Consensus 492 ~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~ 524 (550)
++++.+|.++.+.|++++|.+.|+++++..|+.
T Consensus 1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 1 DALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 478999999999999999999999999999874
No 256
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=96.14 E-value=0.011 Score=38.78 Aligned_cols=28 Identities=39% Similarity=0.488 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 008887 405 ALILMGQTQLQKGLLEEAVEYLECAISK 432 (550)
Q Consensus 405 a~~~lg~~~~~~g~~~eA~~~~~~al~l 432 (550)
++..+|.+|.+.|+|++|+++|++++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 5789999999999999999999998876
No 257
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=96.00 E-value=0.061 Score=43.56 Aligned_cols=77 Identities=19% Similarity=0.176 Sum_probs=52.5
Q ss_pred hHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHHhcCHHH
Q 008887 388 PIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEE 467 (550)
Q Consensus 388 A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~g~~~e 467 (550)
.+..+++.++.+|++..+.+.+|..+...|++++|++.+-++++. ++.+.+.. +...+-.++...|.-+.
T Consensus 7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~-----dr~~~~~~-----ar~~ll~~f~~lg~~~p 76 (90)
T PF14561_consen 7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRR-----DRDYEDDA-----ARKRLLDIFELLGPGDP 76 (90)
T ss_dssp HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC------TTCCCCH-----HHHHHHHHHHHH-TT-H
T ss_pred cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CccccccH-----HHHHHHHHHHHcCCCCh
Confidence 457788999999999999999999999999999999999888888 66553221 33334445555555444
Q ss_pred HHHHHHH
Q 008887 468 GIAHLER 474 (550)
Q Consensus 468 A~~~~~~ 474 (550)
-...+++
T Consensus 77 lv~~~RR 83 (90)
T PF14561_consen 77 LVSEYRR 83 (90)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444433
No 258
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=95.99 E-value=0.26 Score=44.16 Aligned_cols=96 Identities=16% Similarity=0.097 Sum_probs=72.5
Q ss_pred HHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHH
Q 008887 370 KELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLI 449 (550)
Q Consensus 370 ~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~ 449 (550)
..+++....-...++.+++..++...-.+.|+.++.-..-|.++...|+|.+|+..++.+.+. .|..+ .
T Consensus 11 ~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~-----~~~~p-~----- 79 (160)
T PF09613_consen 11 GGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEER-----APGFP-Y----- 79 (160)
T ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc-----CCCCh-H-----
Confidence 355677788888899999999998888899999999999999999999999999999997666 55555 2
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHhcC
Q 008887 450 VASQWSGVACIRQEKWEEGIAHLERIGNL 478 (550)
Q Consensus 450 ~a~~~lg~~~~~~g~~~eA~~~~~~al~~ 478 (550)
+---++.|+..+|+.+-= .+-+++++.
T Consensus 80 -~kALlA~CL~~~~D~~Wr-~~A~evle~ 106 (160)
T PF09613_consen 80 -AKALLALCLYALGDPSWR-RYADEVLES 106 (160)
T ss_pred -HHHHHHHHHHHcCChHHH-HHHHHHHhc
Confidence 223467788777765432 223344444
No 259
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=95.99 E-value=0.051 Score=54.20 Aligned_cols=101 Identities=13% Similarity=0.001 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHH-hcCHHHHHHHHHHHhcCCCCCC
Q 008887 405 ALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIR-QEKWEEGIAHLERIGNLKEPEE 483 (550)
Q Consensus 405 a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~-~g~~~eA~~~~~~al~~~~p~~ 483 (550)
+|..+.....+.+..++|...|++|.+. .+... + .|...|..-+. .++.+.|...|+++++.. +.+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~-----~~~~~-~------vy~~~A~~E~~~~~d~~~A~~Ife~glk~f-~~~ 69 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKD-----KRCTY-H------VYVAYALMEYYCNKDPKRARKIFERGLKKF-PSD 69 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCC-----CCS-T-H------HHHHHHHHHHHTCS-HHHHHHHHHHHHHHH-TT-
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcC-----CCCCH-H------HHHHHHHHHHHhCCCHHHHHHHHHHHHHHC-CCC
Confidence 5677778888888899999999999743 22222 2 45556777555 456666999999999998 888
Q ss_pred ccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcH
Q 008887 484 PKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYN 525 (550)
Q Consensus 484 ~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~ 525 (550)
. ..|..+...+...|+.++|+..|++++..-+...
T Consensus 70 ~-------~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~~~ 104 (280)
T PF05843_consen 70 P-------DFWLEYLDFLIKLNDINNARALFERAISSLPKEK 104 (280)
T ss_dssp H-------HHHHHHHHHHHHTT-HHHHHHHHHHHCCTSSCHH
T ss_pred H-------HHHHHHHHHHHHhCcHHHHHHHHHHHHHhcCchh
Confidence 7 8899999999999999999999999998776665
No 260
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=95.97 E-value=0.14 Score=56.17 Aligned_cols=130 Identities=20% Similarity=0.107 Sum_probs=99.8
Q ss_pred ChHHHHHHHHHHHHc-----CCCCChHHHHHHHHh-----hCCCChHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHH
Q 008887 368 TPKELIALSVKFLSK-----GDKERPIPLLQLALN-----KEPDNINALILMGQTQLQKG-----LLEEAVEYLECAISK 432 (550)
Q Consensus 368 ~~~~l~~la~~~~~~-----g~~~~A~~~~~~aL~-----~~p~~~~a~~~lg~~~~~~g-----~~~eA~~~~~~al~l 432 (550)
+..+...+|..+... +|.+.|+.+|+.+.+ ..-.++.+.+.+|.+|.+.. +.+.|..+|.++.+.
T Consensus 243 ~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~ 322 (552)
T KOG1550|consen 243 HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAEL 322 (552)
T ss_pred chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhc
Confidence 334445666666554 478889999999977 11236778899999999853 778899999999888
Q ss_pred hhhcCCCCChhhHHHHHHHHHHHHHHHHHhc---CHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhc----C
Q 008887 433 LFLAGHPTEPEAIDLLIVASQWSGVACIRQE---KWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNV----G 505 (550)
Q Consensus 433 ~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~g---~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~----g 505 (550)
.++ .+.+.+|.++.... ++.+|.++|.+|.+... ..+.+.+|.||..- .
T Consensus 323 -------g~~-------~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~----------~~A~~~la~~y~~G~gv~r 378 (552)
T KOG1550|consen 323 -------GNP-------DAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGH----------ILAIYRLALCYELGLGVER 378 (552)
T ss_pred -------CCc-------hHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCC----------hHHHHHHHHHHHhCCCcCC
Confidence 122 26667999887655 67899999999988752 28999999998743 4
Q ss_pred CHHHHHHHHHHHHHcC
Q 008887 506 RNAEAEKYLRLAAAHN 521 (550)
Q Consensus 506 ~~~eA~~~l~~al~~~ 521 (550)
+.++|..+++++.+.+
T Consensus 379 ~~~~A~~~~k~aA~~g 394 (552)
T KOG1550|consen 379 NLELAFAYYKKAAEKG 394 (552)
T ss_pred CHHHHHHHHHHHHHcc
Confidence 7899999999999987
No 261
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=95.97 E-value=0.025 Score=61.74 Aligned_cols=115 Identities=18% Similarity=0.117 Sum_probs=67.3
Q ss_pred HHHHHHHHHcCCCCChHHHHHHH----------HhhCCC----------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 008887 373 IALSVKFLSKGDKERPIPLLQLA----------LNKEPD----------NINALILMGQTQLQKGLLEEAVEYLECAISK 432 (550)
Q Consensus 373 ~~la~~~~~~g~~~~A~~~~~~a----------L~~~p~----------~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l 432 (550)
++.|..+...+|.+.|+++|+++ |+.+|. +...|.+-|+.....|+.+.|+.+|..|-.
T Consensus 862 y~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D- 940 (1416)
T KOG3617|consen 862 YNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD- 940 (1416)
T ss_pred HHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh-
Confidence 35555555555666666666553 112222 334445555555556666666665555521
Q ss_pred hhhcCCCCChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHH
Q 008887 433 LFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEK 512 (550)
Q Consensus 433 ~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~ 512 (550)
|+.+-++.+-+|+.++|...-++ ..|. .+.|.+|+.|...|+..+|+.
T Consensus 941 -------------------~fs~VrI~C~qGk~~kAa~iA~e------sgd~-------AAcYhlaR~YEn~g~v~~Av~ 988 (1416)
T KOG3617|consen 941 -------------------YFSMVRIKCIQGKTDKAARIAEE------SGDK-------AACYHLARMYENDGDVVKAVK 988 (1416)
T ss_pred -------------------hhhheeeEeeccCchHHHHHHHh------cccH-------HHHHHHHHHhhhhHHHHHHHH
Confidence 12234444455555555555444 2222 678899999999999999999
Q ss_pred HHHHHHHc
Q 008887 513 YLRLAAAH 520 (550)
Q Consensus 513 ~l~~al~~ 520 (550)
.|.++...
T Consensus 989 FfTrAqaf 996 (1416)
T KOG3617|consen 989 FFTRAQAF 996 (1416)
T ss_pred HHHHHHHH
Confidence 99887554
No 262
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=95.96 E-value=0.18 Score=52.87 Aligned_cols=114 Identities=16% Similarity=0.159 Sum_probs=80.2
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCC
Q 008887 403 INALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPE 482 (550)
Q Consensus 403 ~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~ 482 (550)
..+...+|.+..+.|+.+||++.+++.++. +|..... ..++++-.++...+.|+++...+.+.=+...|+
T Consensus 259 ~y~KrRLAmCarklGr~~EAIk~~rdLlke-----~p~~~~l-----~IrenLie~LLelq~Yad~q~lL~kYdDi~lpk 328 (539)
T PF04184_consen 259 VYAKRRLAMCARKLGRLREAIKMFRDLLKE-----FPNLDNL-----NIRENLIEALLELQAYADVQALLAKYDDISLPK 328 (539)
T ss_pred hhhHHHHHHHHHHhCChHHHHHHHHHHHhh-----CCccchh-----hHHHHHHHHHHhcCCHHHHHHHHHHhccccCCc
Confidence 345567999999999999999999999988 6643322 277899999999999999999999843221122
Q ss_pred CccccccchhHHHHHHHHHH-hcCC---------------HHHHHHHHHHHHHcCCCcHHHHHHHHh
Q 008887 483 EPKSKAHYYDGLVVLASALC-NVGR---------------NAEAEKYLRLAAAHNPQYNELLEQLEN 533 (550)
Q Consensus 483 ~~~~~~~~~~~~~~La~~~~-~~g~---------------~~eA~~~l~~al~~~p~~~~~~~~l~~ 533 (550)
.. ...+.-|-+.. ..|+ -..|.++..++.+.||..++++-....
T Consensus 329 SA-------ti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~YLLe~K~ 388 (539)
T PF04184_consen 329 SA-------TICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKYLLEMKS 388 (539)
T ss_pred hH-------HHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchhhhccCC
Confidence 22 33333333221 1222 134778999999999999987765443
No 263
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.95 E-value=0.048 Score=50.11 Aligned_cols=94 Identities=16% Similarity=0.177 Sum_probs=74.6
Q ss_pred HHHHHHHHHcCCCCChHHHHHHHHhhCCCC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHH
Q 008887 373 IALSVKFLSKGDKERPIPLLQLALNKEPDN---INALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLI 449 (550)
Q Consensus 373 ~~la~~~~~~g~~~~A~~~~~~aL~~~p~~---~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~ 449 (550)
..+|..+...|++++|+..++.++....|. .-+-..+|.+..++|++++|+..++..... .+...
T Consensus 93 L~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~----------~w~~~-- 160 (207)
T COG2976 93 LELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEE----------SWAAI-- 160 (207)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccc----------cHHHH--
Confidence 388999999999999999999999654332 345568999999999999999887654322 12211
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHhcCC
Q 008887 450 VASQWSGVACIRQEKWEEGIAHLERIGNLK 479 (550)
Q Consensus 450 ~a~~~lg~~~~~~g~~~eA~~~~~~al~~~ 479 (550)
.....|.++...|+-++|+..|+++++..
T Consensus 161 -~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 161 -VAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred -HHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 22357999999999999999999999985
No 264
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.90 E-value=0.11 Score=49.49 Aligned_cols=140 Identities=12% Similarity=0.050 Sum_probs=90.9
Q ss_pred HHHHHHHHcCCCCChHHHHHHHHhhC-----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHH
Q 008887 374 ALSVKFLSKGDKERPIPLLQLALNKE-----PDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLL 448 (550)
Q Consensus 374 ~la~~~~~~g~~~~A~~~~~~aL~~~-----p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l 448 (550)
..|........+.++..++++|...+ |+.+..-...+--..+..+.++|++.|++++.+... .+ ..+.-
T Consensus 76 qaamLake~~klsEvvdl~eKAs~lY~E~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~----~d--r~~ma 149 (308)
T KOG1585|consen 76 QAAMLAKELSKLSEVVDLYEKASELYVECGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEE----DD--RDQMA 149 (308)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhc----cc--hHHHH
Confidence 45556666778888999999998754 444444455666667888999999999999988421 11 11111
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 008887 449 IVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHN 521 (550)
Q Consensus 449 ~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~ 521 (550)
.+.+...++.+.+..++++|-..+.+-.... . ...+.......+...-.+|.-..+|..|...++..-++.
T Consensus 150 ~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~-~-~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip 220 (308)
T KOG1585|consen 150 FELYGKCSRVLVRLEKFTEAATAFLKEGVAA-D-KCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIP 220 (308)
T ss_pred HHHHHHhhhHhhhhHHhhHHHHHHHHhhhHH-H-HHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCc
Confidence 1245568889999999999998887644331 0 000001111334444455566669999999999876654
No 265
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=95.88 E-value=0.014 Score=38.29 Aligned_cols=29 Identities=24% Similarity=0.181 Sum_probs=24.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 008887 493 GLVVLASALCNVGRNAEAEKYLRLAAAHN 521 (550)
Q Consensus 493 ~~~~La~~~~~~g~~~eA~~~l~~al~~~ 521 (550)
++.+||.+|.+.|++++|+++|++++.+.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~ 29 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALA 29 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 47899999999999999999999966543
No 266
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=95.86 E-value=0.02 Score=38.55 Aligned_cols=39 Identities=28% Similarity=0.196 Sum_probs=27.3
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCC
Q 008887 403 INALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTE 441 (550)
Q Consensus 403 ~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~ 441 (550)
..++.++|.+|...|++++|++++++++++.+....+++
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~G~~H 40 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEIRERLLGPDH 40 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH--------
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHHHHHHhcccc
Confidence 457889999999999999999999999998544434433
No 267
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=95.85 E-value=0.0042 Score=61.47 Aligned_cols=93 Identities=19% Similarity=0.223 Sum_probs=79.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccc
Q 008887 409 MGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKA 488 (550)
Q Consensus 409 lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~ 488 (550)
.+.-.+..|.+++|+++|..++++ +|... ..+-..+.++.++++...|+..|..+++++ ++..
T Consensus 120 ~A~eAln~G~~~~ai~~~t~ai~l-----np~~a-------~l~~kr~sv~lkl~kp~~airD~d~A~ein-~Dsa---- 182 (377)
T KOG1308|consen 120 QASEALNDGEFDTAIELFTSAIEL-----NPPLA-------ILYAKRASVFLKLKKPNAAIRDCDFAIEIN-PDSA---- 182 (377)
T ss_pred HHHHHhcCcchhhhhccccccccc-----CCchh-------hhcccccceeeeccCCchhhhhhhhhhccC-cccc----
Confidence 344445668899999999999999 67655 255678999999999999999999999997 7776
Q ss_pred cchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 008887 489 HYYDGLVVLASALCNVGRNAEAEKYLRLAAAHN 521 (550)
Q Consensus 489 ~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~ 521 (550)
..|-..+.+...+|++++|...++.+.+++
T Consensus 183 ---~~ykfrg~A~rllg~~e~aa~dl~~a~kld 212 (377)
T KOG1308|consen 183 ---KGYKFRGYAERLLGNWEEAAHDLALACKLD 212 (377)
T ss_pred ---cccchhhHHHHHhhchHHHHHHHHHHHhcc
Confidence 677788889999999999999999998876
No 268
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.82 E-value=0.035 Score=59.51 Aligned_cols=97 Identities=14% Similarity=0.115 Sum_probs=78.7
Q ss_pred HHHHHHHHHHcCCCCChHHHHHHHHhhCCC----ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHH
Q 008887 372 LIALSVKFLSKGDKERPIPLLQLALNKEPD----NINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDL 447 (550)
Q Consensus 372 l~~la~~~~~~g~~~~A~~~~~~aL~~~p~----~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~ 447 (550)
++..|..+...|+.++|++.|++++....+ ..-+++.+|.++..+++|++|.+++.+..+. +.-..
T Consensus 270 l~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~-----s~WSk----- 339 (468)
T PF10300_consen 270 LFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKE-----SKWSK----- 339 (468)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhc-----cccHH-----
Confidence 348999999999999999999999863322 3456789999999999999999999999887 22111
Q ss_pred HHHHHHHHHHHHHHhcCH-------HHHHHHHHHHhcCC
Q 008887 448 LIVASQWSGVACIRQEKW-------EEGIAHLERIGNLK 479 (550)
Q Consensus 448 l~~a~~~lg~~~~~~g~~-------~eA~~~~~~al~~~ 479 (550)
....|..|.|+...|+. ++|.++++++-...
T Consensus 340 -a~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~ 377 (468)
T PF10300_consen 340 -AFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLK 377 (468)
T ss_pred -HHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHH
Confidence 12567789999999999 99999999887664
No 269
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=95.82 E-value=0.3 Score=49.97 Aligned_cols=147 Identities=14% Similarity=0.029 Sum_probs=106.7
Q ss_pred hHHHHHHHHHHHHcCCCCChHHHHHHHHhhCC----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHH-HhhhcCCC----
Q 008887 369 PKELIALSVKFLSKGDKERPIPLLQLALNKEP----DNINALILMGQTQLQKGLLEEAVEYLECAIS-KLFLAGHP---- 439 (550)
Q Consensus 369 ~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p----~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~-l~~~~~~p---- 439 (550)
.+.....+......|+++.|...+.++.+.++ ..+...+..+......|+.++|+..+++.+. ......++
T Consensus 146 ~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~ 225 (352)
T PF02259_consen 146 AETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNA 225 (352)
T ss_pred HHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHH
Confidence 34556899999999999999999999988552 2578888999999999999999999999888 21110000
Q ss_pred ---------------C--ChhhHHHHHHHHHHHHHHHHHh------cCHHHHHHHHHHHhcCCCCCCccccccchhHHHH
Q 008887 440 ---------------T--EPEAIDLLIVASQWSGVACIRQ------EKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVV 496 (550)
Q Consensus 440 ---------------~--~~~~~~~l~~a~~~lg~~~~~~------g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~ 496 (550)
. ..........++..+|.-.... ++.+++++.|+++++.+ |+.. .+|+.
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~-~~~~-------k~~~~ 297 (352)
T PF02259_consen 226 ELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLD-PSWE-------KAWHS 297 (352)
T ss_pred HHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhC-hhHH-------HHHHH
Confidence 0 1112333444667777777777 99999999999999997 7666 77777
Q ss_pred HHHHHHhcCCH-----------------HHHHHHHHHHHHcCCC
Q 008887 497 LASALCNVGRN-----------------AEAEKYLRLAAAHNPQ 523 (550)
Q Consensus 497 La~~~~~~g~~-----------------~eA~~~l~~al~~~p~ 523 (550)
+|..+.+.=+. ..|+..|-+++...++
T Consensus 298 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~ 341 (352)
T PF02259_consen 298 WALFNDKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSK 341 (352)
T ss_pred HHHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCC
Confidence 77776543221 2366677777777666
No 270
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.81 E-value=0.035 Score=49.24 Aligned_cols=63 Identities=30% Similarity=0.327 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Q 008887 371 ELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKL 433 (550)
Q Consensus 371 ~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~ 433 (550)
.+..++..+...|++++|+..+++++..+|.+-.++..+-.+|...|+..+|++.|+++.+..
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l 126 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRL 126 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 344788889999999999999999999999999999999999999999999999999987763
No 271
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=95.70 E-value=0.023 Score=36.00 Aligned_cols=29 Identities=28% Similarity=0.468 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 008887 404 NALILMGQTQLQKGLLEEAVEYLECAISK 432 (550)
Q Consensus 404 ~a~~~lg~~~~~~g~~~eA~~~~~~al~l 432 (550)
++++.+|.++.+.|++++|++.|+++++.
T Consensus 1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 1 DALYRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 36778888888888888888888888877
No 272
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=95.69 E-value=0.13 Score=57.15 Aligned_cols=95 Identities=25% Similarity=0.292 Sum_probs=78.6
Q ss_pred HHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhH
Q 008887 414 LQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDG 493 (550)
Q Consensus 414 ~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~ 493 (550)
...+++.+|++...+.++. .|+.. . +...-|..+.++|+.++|..+++..-... ++|. ..
T Consensus 20 ld~~qfkkal~~~~kllkk-----~Pn~~-~------a~vLkaLsl~r~gk~~ea~~~Le~~~~~~-~~D~-------~t 79 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKK-----HPNAL-Y------AKVLKALSLFRLGKGDEALKLLEALYGLK-GTDD-------LT 79 (932)
T ss_pred hhhHHHHHHHHHHHHHHHH-----CCCcH-H------HHHHHHHHHHHhcCchhHHHHHhhhccCC-CCch-------HH
Confidence 3568899999999999999 77776 3 34446888999999999998887765554 6665 78
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHHHH
Q 008887 494 LVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLE 529 (550)
Q Consensus 494 ~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~ 529 (550)
+..+-.||.++|++++|..+|+++...+|+ .+...
T Consensus 80 Lq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~-eell~ 114 (932)
T KOG2053|consen 80 LQFLQNVYRDLGKLDEAVHLYERANQKYPS-EELLY 114 (932)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHhhCCc-HHHHH
Confidence 889999999999999999999999999999 55433
No 273
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=95.67 E-value=0.09 Score=54.34 Aligned_cols=128 Identities=17% Similarity=0.143 Sum_probs=101.4
Q ss_pred HHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHH
Q 008887 378 KFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGV 457 (550)
Q Consensus 378 ~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~ 457 (550)
..+..||.-.|-+-+..+|+.+|.++......+.+..+.|+|+++.+.+..+-... ...+. +...+-+
T Consensus 298 k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~----~s~~~--------~~~~~~r 365 (831)
T PRK15180 298 KQLADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKII----GTTDS--------TLRCRLR 365 (831)
T ss_pred HHhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhh----cCCch--------HHHHHHH
Confidence 45778999999999999999999999999999999999999999999876654441 11111 3345667
Q ss_pred HHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcH
Q 008887 458 ACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYN 525 (550)
Q Consensus 458 ~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~ 525 (550)
.....|++++|...-+-.+..+ -+++ +....-|....++|-+|+|..++++++.++|...
T Consensus 366 ~~~~l~r~~~a~s~a~~~l~~e-ie~~-------ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~ 425 (831)
T PRK15180 366 SLHGLARWREALSTAEMMLSNE-IEDE-------EVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQ 425 (831)
T ss_pred hhhchhhHHHHHHHHHHHhccc-cCCh-------hheeeecccHHHHhHHHHHHHHHHHHhccCChhc
Confidence 7888999999999988877664 6666 6666666677888999999999999999986543
No 274
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=95.62 E-value=0.57 Score=47.58 Aligned_cols=133 Identities=16% Similarity=0.102 Sum_probs=93.4
Q ss_pred HHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHH
Q 008887 378 KFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGV 457 (550)
Q Consensus 378 ~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~ 457 (550)
.....|+.+.|..+-+++-.+.|.-+.++...-...+..|||++|++..+...+.. ...+...+....... ..-+.
T Consensus 163 eAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~--vie~~~aeR~rAvLL--tAkA~ 238 (531)
T COG3898 163 EAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAK--VIEKDVAERSRAVLL--TAKAM 238 (531)
T ss_pred HHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHH--hhchhhHHHHHHHHH--HHHHH
Confidence 45667888888888888888889999888888888999999999999987766552 112222211111110 01111
Q ss_pred HHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 008887 458 ACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQ 523 (550)
Q Consensus 458 ~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~ 523 (550)
. .-.-+...|...-.+++++. |+.. -+-..-+.++++.|+..++-..++.+.+..|.
T Consensus 239 s-~ldadp~~Ar~~A~~a~KL~-pdlv-------Paav~AAralf~d~~~rKg~~ilE~aWK~ePH 295 (531)
T COG3898 239 S-LLDADPASARDDALEANKLA-PDLV-------PAAVVAARALFRDGNLRKGSKILETAWKAEPH 295 (531)
T ss_pred H-HhcCChHHHHHHHHHHhhcC-Cccc-------hHHHHHHHHHHhccchhhhhhHHHHHHhcCCC
Confidence 1 22345677888888888887 7666 67777788888888888888888888877655
No 275
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=95.61 E-value=0.036 Score=54.10 Aligned_cols=65 Identities=25% Similarity=0.285 Sum_probs=61.2
Q ss_pred HHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCCh
Q 008887 373 IALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEP 442 (550)
Q Consensus 373 ~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~ 442 (550)
.+.|......|+.++|..+|+.|++++|++++++..+|......++.-+|-++|-+|+.+ +|.+.
T Consensus 120 l~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALti-----sP~ns 184 (472)
T KOG3824|consen 120 LKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTI-----SPGNS 184 (472)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeee-----CCCch
Confidence 377788899999999999999999999999999999999999999999999999999999 88776
No 276
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=95.55 E-value=0.037 Score=54.07 Aligned_cols=68 Identities=19% Similarity=0.164 Sum_probs=61.3
Q ss_pred HHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHHHHHH
Q 008887 456 GVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQL 531 (550)
Q Consensus 456 g~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~l 531 (550)
+.-..+.|+.++|...|+.++.+. |+++ +++..+|.......+.-+|-++|-+++.++|.+.+++-+-
T Consensus 123 A~~~~~~Gk~ekA~~lfeHAlala-P~~p-------~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR 190 (472)
T KOG3824|consen 123 AGRSRKDGKLEKAMTLFEHALALA-PTNP-------QILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNR 190 (472)
T ss_pred HHHHHhccchHHHHHHHHHHHhcC-CCCH-------HHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhh
Confidence 334457899999999999999998 9999 9999999999999999999999999999999999977653
No 277
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=95.51 E-value=0.19 Score=53.93 Aligned_cols=145 Identities=16% Similarity=0.064 Sum_probs=94.4
Q ss_pred ChHHHH-HHHHHHHHcCCCCChHHHHHHHHhhCC----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh----cCC
Q 008887 368 TPKELI-ALSVKFLSKGDKERPIPLLQLALNKEP----DNINALILMGQTQLQKGLLEEAVEYLECAISKLFL----AGH 438 (550)
Q Consensus 368 ~~~~l~-~la~~~~~~g~~~~A~~~~~~aL~~~p----~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~----~~~ 438 (550)
++..+. ..|..|...|+.+.|...|+++.+.+= +-...|..-|..-+...+++.|+...++|...=.. .-+
T Consensus 385 s~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd 464 (835)
T KOG2047|consen 385 SPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYD 464 (835)
T ss_pred ChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhc
Confidence 344444 899999999999999999999999652 23577888899999999999999999998755100 000
Q ss_pred CCChhh---HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHH
Q 008887 439 PTEPEA---IDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLR 515 (550)
Q Consensus 439 p~~~~~---~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~ 515 (550)
...+-. ...+ ..|..++......|-++.....|++.+++. --.| ....+.|..+....-+++|.+.|+
T Consensus 465 ~~~pvQ~rlhrSl-kiWs~y~DleEs~gtfestk~vYdriidLr-iaTP-------qii~NyAmfLEeh~yfeesFk~YE 535 (835)
T KOG2047|consen 465 NSEPVQARLHRSL-KIWSMYADLEESLGTFESTKAVYDRIIDLR-IATP-------QIIINYAMFLEEHKYFEESFKAYE 535 (835)
T ss_pred CCCcHHHHHHHhH-HHHHHHHHHHHHhccHHHHHHHHHHHHHHh-cCCH-------HHHHHHHHHHHhhHHHHHHHHHHH
Confidence 111100 1111 145555555666677777777777777664 3333 555566666666666666666666
Q ss_pred HHHHcC
Q 008887 516 LAAAHN 521 (550)
Q Consensus 516 ~al~~~ 521 (550)
+.+.+-
T Consensus 536 rgI~LF 541 (835)
T KOG2047|consen 536 RGISLF 541 (835)
T ss_pred cCCccC
Confidence 655543
No 278
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.40 E-value=0.17 Score=52.53 Aligned_cols=144 Identities=15% Similarity=0.066 Sum_probs=102.0
Q ss_pred ChHHHHHHHHHHHHcCCCCChHHHHHHHHhhCC-CC--hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCCh--
Q 008887 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEP-DN--INALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEP-- 442 (550)
Q Consensus 368 ~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p-~~--~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~-- 442 (550)
.+.-.+-+|.....-+.+++|+..|..|.++-. .+ +.+..++|.+|...|+-+.-.+.++.. +|.+.
T Consensus 366 ~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld~i--------~p~nt~s 437 (629)
T KOG2300|consen 366 EAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGDAEDLYKALDLI--------GPLNTNS 437 (629)
T ss_pred HHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhccHHHHHHHHHhc--------CCCCCCc
Confidence 344556889999999999999999999998643 33 344568999999988876555444332 44321
Q ss_pred hhHH-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 008887 443 EAID-LLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHN 521 (550)
Q Consensus 443 ~~~~-~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~ 521 (550)
...+ .-...++..|...+.++++.||...+++.++.. +..+.-.-.+..+..|+.+....|+..|+.+..+-++.+.
T Consensus 438 ~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkma--naed~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlA 515 (629)
T KOG2300|consen 438 LSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMA--NAEDLNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLA 515 (629)
T ss_pred chHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc--chhhHHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHH
Confidence 1111 111256677888899999999999999999884 2221222244567789999999999999998887776654
No 279
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=95.38 E-value=0.1 Score=43.55 Aligned_cols=95 Identities=11% Similarity=0.148 Sum_probs=72.3
Q ss_pred HHHHHHHcCCCCChHHHHHHHHhhCCCCh---HHHHHHHHHHHHcCC-----------HHHHHHHHHHHHHHhhhcCCCC
Q 008887 375 LSVKFLSKGDKERPIPLLQLALNKEPDNI---NALILMGQTQLQKGL-----------LEEAVEYLECAISKLFLAGHPT 440 (550)
Q Consensus 375 la~~~~~~g~~~~A~~~~~~aL~~~p~~~---~a~~~lg~~~~~~g~-----------~~eA~~~~~~al~l~~~~~~p~ 440 (550)
.|..++.+|++-+|++..+..+..+.++. ..+...|.++.+... .-.++++|.++..+ .|.
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~L-----sp~ 76 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVEL-----SPD 76 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhcc-----Chh
Confidence 57789999999999999999999887766 566778888865543 22588888888888 444
Q ss_pred ChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCC
Q 008887 441 EPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEP 481 (550)
Q Consensus 441 ~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p 481 (550)
.. ...+.+|.-+-....|+++..-.++++....|
T Consensus 77 ~A-------~~L~~la~~l~s~~~Ykk~v~kak~~Lsv~~p 110 (111)
T PF04781_consen 77 SA-------HSLFELASQLGSVKYYKKAVKKAKRGLSVTNP 110 (111)
T ss_pred HH-------HHHHHHHHHhhhHHHHHHHHHHHHHHhcccCC
Confidence 42 24556777766677788999999988877533
No 280
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=95.36 E-value=0.045 Score=57.80 Aligned_cols=106 Identities=16% Similarity=0.063 Sum_probs=89.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccc
Q 008887 409 MGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKA 488 (550)
Q Consensus 409 lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~ 488 (550)
-|..+...|+...|.+++..|+.. .|... .. ...+++.++.+.|-..+|-..+.+++.+. ...+
T Consensus 613 aglywr~~gn~~~a~~cl~~a~~~-----~p~~~-~v-----~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sep---- 676 (886)
T KOG4507|consen 613 AGLYWRAVGNSTFAIACLQRALNL-----APLQQ-DV-----PLVNLANLLIHYGLHLDATKLLLQALAIN-SSEP---- 676 (886)
T ss_pred ccceeeecCCcHHHHHHHHHHhcc-----Chhhh-cc-----cHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCc----
Confidence 355556789999999999999888 44443 21 44579999999999999999999999997 6666
Q ss_pred cchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHHHHHHHh
Q 008887 489 HYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQLEN 533 (550)
Q Consensus 489 ~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~l~~ 533 (550)
-.++.+|.+|..+.+.++|++.++.++..+|++.+..+.|..
T Consensus 677 ---l~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~~~~~~~~~l~~ 718 (886)
T KOG4507|consen 677 ---LTFLSLGNAYLALKNISGALEAFRQALKLTTKCPECENSLKL 718 (886)
T ss_pred ---hHHHhcchhHHHHhhhHHHHHHHHHHHhcCCCChhhHHHHHH
Confidence 889999999999999999999999999999999987776655
No 281
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=95.34 E-value=0.23 Score=42.85 Aligned_cols=77 Identities=23% Similarity=0.260 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHh---cCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHH
Q 008887 451 ASQWSGVACIRQ---EKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNEL 527 (550)
Q Consensus 451 a~~~lg~~~~~~---g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~ 527 (550)
..++++.++... .+..+.+..++..++...|+.. -+..+.||..+.+.|+|++++++.+..++..|++.++
T Consensus 34 s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~r------Re~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa 107 (149)
T KOG3364|consen 34 SQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERR------RECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQA 107 (149)
T ss_pred HHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccc------hhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHH
Confidence 667788888765 4556889999998873213221 2678899999999999999999999999999999987
Q ss_pred HHHHHh
Q 008887 528 LEQLEN 533 (550)
Q Consensus 528 ~~~l~~ 533 (550)
...-+.
T Consensus 108 ~~Lk~~ 113 (149)
T KOG3364|consen 108 LELKET 113 (149)
T ss_pred HHHHHH
Confidence 664333
No 282
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=95.25 E-value=0.73 Score=49.68 Aligned_cols=139 Identities=14% Similarity=0.109 Sum_probs=109.6
Q ss_pred HHHHcCCCCChHHHHHHHHh-hCCC-----ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHH
Q 008887 378 KFLSKGDKERPIPLLQLALN-KEPD-----NINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVA 451 (550)
Q Consensus 378 ~~~~~g~~~~A~~~~~~aL~-~~p~-----~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a 451 (550)
.-+..|+..+-+..|.+|++ .+|. -...|..+|..|...|+.+.|...|+++.... .+ ..+.+...
T Consensus 356 V~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~-------y~-~v~dLa~v 427 (835)
T KOG2047|consen 356 VKLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVP-------YK-TVEDLAEV 427 (835)
T ss_pred hhhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCC-------cc-chHHHHHH
Confidence 45667888888999999987 4553 24678899999999999999999999999882 22 33445557
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCcc------ccc------cchhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008887 452 SQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPK------SKA------HYYDGLVVLASALCNVGRNAEAEKYLRLAAA 519 (550)
Q Consensus 452 ~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~------~~~------~~~~~~~~La~~~~~~g~~~eA~~~l~~al~ 519 (550)
|...|..-.+..+++.|+++.++|... |..+. .++ +....|..++......|-++.-...|++++.
T Consensus 428 w~~waemElrh~~~~~Al~lm~~A~~v--P~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriid 505 (835)
T KOG2047|consen 428 WCAWAEMELRHENFEAALKLMRRATHV--PTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIID 505 (835)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHhhhcC--CCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 778888888999999999999999887 55532 000 2567888999999999999999999999998
Q ss_pred cCCCcHH
Q 008887 520 HNPQYNE 526 (550)
Q Consensus 520 ~~p~~~~ 526 (550)
+.-..+.
T Consensus 506 LriaTPq 512 (835)
T KOG2047|consen 506 LRIATPQ 512 (835)
T ss_pred HhcCCHH
Confidence 8744444
No 283
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=95.18 E-value=1.2 Score=46.29 Aligned_cols=129 Identities=16% Similarity=0.147 Sum_probs=85.3
Q ss_pred HHHHHHHHHcCC-CCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHH--HHHHHHHHh---hhcCCC-CChhhH
Q 008887 373 IALSVKFLSKGD-KERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVE--YLECAISKL---FLAGHP-TEPEAI 445 (550)
Q Consensus 373 ~~la~~~~~~g~-~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~--~~~~al~l~---~~~~~p-~~~~~~ 445 (550)
..-|..+...|+ -++|+++++.+++..+.+..+-+..- .+-...|.+|+. .+.+.+.+. ...|-+ -...+.
T Consensus 383 ~~~Ak~lW~~g~~dekalnLLk~il~ft~yD~ec~n~v~--~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~ 460 (549)
T PF07079_consen 383 VFGAKHLWEIGQCDEKALNLLKLILQFTNYDIECENIVF--LFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEE 460 (549)
T ss_pred HHHHHHHHhcCCccHHHHHHHHHHHHhccccHHHHHHHH--HHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHH
Confidence 477888888888 67799999999999998876544321 122233444332 122222221 111111 111111
Q ss_pred HHHHHHHHHHH--HHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHH
Q 008887 446 DLLIVASQWSG--VACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRL 516 (550)
Q Consensus 446 ~~l~~a~~~lg--~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~ 516 (550)
+..+.++ ..++.+|+|.++.-+.....+.. | .+ .++..+|.|+....+|+||..++..
T Consensus 461 ----eian~LaDAEyLysqgey~kc~~ys~WL~~ia-P-S~-------~~~RLlGl~l~e~k~Y~eA~~~l~~ 520 (549)
T PF07079_consen 461 ----EIANFLADAEYLYSQGEYHKCYLYSSWLTKIA-P-SP-------QAYRLLGLCLMENKRYQEAWEYLQK 520 (549)
T ss_pred ----HHHHHHHHHHHHHhcccHHHHHHHHHHHHHhC-C-cH-------HHHHHHHHHHHHHhhHHHHHHHHHh
Confidence 1222343 44778999999999999999997 7 66 8999999999999999999999764
No 284
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.10 E-value=0.62 Score=46.40 Aligned_cols=109 Identities=18% Similarity=0.022 Sum_probs=85.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCcc
Q 008887 406 LILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPK 485 (550)
Q Consensus 406 ~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~ 485 (550)
+...+.+....|++.+|....++.++. .|++- .++..--.++...|+.+.-...+++.+..-+++.|
T Consensus 106 ~h~~aai~~~~g~~h~a~~~wdklL~d-----~PtDl-------la~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp- 172 (491)
T KOG2610|consen 106 RHAKAAILWGRGKHHEAAIEWDKLLDD-----YPTDL-------LAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLP- 172 (491)
T ss_pred hhhhHHHhhccccccHHHHHHHHHHHh-----Cchhh-------hhhhhhhhHHHhccchhhhhhHHHHhccccCCCCc-
Confidence 344566677789999999999999998 67665 24445556778889999999999999877435444
Q ss_pred ccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHHHHH
Q 008887 486 SKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQ 530 (550)
Q Consensus 486 ~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~ 530 (550)
.+....-.++-++.+.|-|++|++.-++++++|+.+.=+...
T Consensus 173 ---~~sYv~GmyaFgL~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha 214 (491)
T KOG2610|consen 173 ---CYSYVHGMYAFGLEECGIYDDAEKQADRALQINRFDCWASHA 214 (491)
T ss_pred ---HHHHHHHHHHhhHHHhccchhHHHHHHhhccCCCcchHHHHH
Confidence 556777788899999999999999999999999988654443
No 285
>PRK10941 hypothetical protein; Provisional
Probab=95.03 E-value=0.23 Score=48.95 Aligned_cols=71 Identities=13% Similarity=0.038 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHHHH
Q 008887 451 ASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLE 529 (550)
Q Consensus 451 a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~ 529 (550)
...++-.+|.+.+++++|+.+.+..+... |+++ .-+.-.|.+|.++|.+..|...++..++..|+++.+..
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~-P~dp-------~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ 253 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFD-PEDP-------YEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEM 253 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhC-CCCH-------HHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHH
Confidence 55678999999999999999999999998 9999 77888999999999999999999999999999887543
No 286
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=95.03 E-value=0.04 Score=33.69 Aligned_cols=33 Identities=27% Similarity=0.368 Sum_probs=30.1
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCc
Q 008887 492 DGLVVLASALCNVGRNAEAEKYLRLAAAHNPQY 524 (550)
Q Consensus 492 ~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~ 524 (550)
.++..+|.++...|++++|...++++++++|++
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~ 34 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCC
Confidence 578899999999999999999999999988763
No 287
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=95.02 E-value=0.46 Score=49.05 Aligned_cols=145 Identities=20% Similarity=0.157 Sum_probs=108.2
Q ss_pred ChHHHHHHHHHHHHcCCCCChHHHHHHHHhh--------------C------------CCCh---HHHHHHHHHHHHcCC
Q 008887 368 TPKELIALSVKFLSKGDKERPIPLLQLALNK--------------E------------PDNI---NALILMGQTQLQKGL 418 (550)
Q Consensus 368 ~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~--------------~------------p~~~---~a~~~lg~~~~~~g~ 418 (550)
..+.+..++..+..+|+.+.|.+++++||-. + ++|. .+.+.....+.++|-
T Consensus 39 HidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L~~RG~ 118 (360)
T PF04910_consen 39 HIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSLGRRGC 118 (360)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHHHHhcCc
Confidence 5567889999999999999999999999761 1 2232 344667788899999
Q ss_pred HHHHHHHHHHHHHHhhhcCCCC-ChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHH
Q 008887 419 LEEAVEYLECAISKLFLAGHPT-EPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVL 497 (550)
Q Consensus 419 ~~eA~~~~~~al~l~~~~~~p~-~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~L 497 (550)
+.-|.++.+-.+.+ +|. ||.. +.+.+-....+.++|+-=++.++........+.. .......+..
T Consensus 119 ~rTAlE~~KlLlsL-----dp~~DP~g------~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~---~~lPn~a~S~ 184 (360)
T PF04910_consen 119 WRTALEWCKLLLSL-----DPDEDPLG------VLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWL---SLLPNFAFSI 184 (360)
T ss_pred HHHHHHHHHHHHhc-----CCCCCcch------hHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhh---hhCccHHHHH
Confidence 99999999999999 898 7633 5555667777889999888888876552101100 0011566777
Q ss_pred HHHHHhcCCH---------------HHHHHHHHHHHHcCCCcHH
Q 008887 498 ASALCNVGRN---------------AEAEKYLRLAAAHNPQYNE 526 (550)
Q Consensus 498 a~~~~~~g~~---------------~eA~~~l~~al~~~p~~~~ 526 (550)
+.++...++. ++|.+.+.+++...|....
T Consensus 185 aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~vl~ 228 (360)
T PF04910_consen 185 ALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPWVLV 228 (360)
T ss_pred HHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhHHHHH
Confidence 8888888888 8999999999988776544
No 288
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=94.96 E-value=0.28 Score=46.69 Aligned_cols=91 Identities=20% Similarity=0.120 Sum_probs=61.1
Q ss_pred CCCCChHHHHHHHHhh----CCC---ChHHHHHHHHHHHHcCCHHH-------HHHHHHHHHHHhhhcCCCCChhhHHHH
Q 008887 383 GDKERPIPLLQLALNK----EPD---NINALILMGQTQLQKGLLEE-------AVEYLECAISKLFLAGHPTEPEAIDLL 448 (550)
Q Consensus 383 g~~~~A~~~~~~aL~~----~p~---~~~a~~~lg~~~~~~g~~~e-------A~~~~~~al~l~~~~~~p~~~~~~~~l 448 (550)
..+++|++.|..|+-. ..+ -+..+..+|++|...|+.++ |++.|+++.+.. ..|..+... .
T Consensus 91 Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e---~~~~~~~~~--~ 165 (214)
T PF09986_consen 91 RTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENE---DFPIEGMDE--A 165 (214)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhC---cCCCCCchH--H
Confidence 3555677777777652 222 24567789999999999664 555555555551 122222111 1
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHhcCC
Q 008887 449 IVASQWSGVACIRQEKWEEGIAHLERIGNLK 479 (550)
Q Consensus 449 ~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~ 479 (550)
...+-+|....+.|++++|..+|.+++...
T Consensus 166 -~l~YLigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 166 -TLLYLIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred -HHHHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 155679999999999999999999999874
No 289
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=94.85 E-value=0.19 Score=41.06 Aligned_cols=65 Identities=20% Similarity=0.101 Sum_probs=48.6
Q ss_pred HHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCC
Q 008887 412 TQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLK 479 (550)
Q Consensus 412 ~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~ 479 (550)
...+.|||.+|++.+.+..+......+... ...+..+..++|..+...|++++|++.+++++++.
T Consensus 7 ~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~---~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~A 71 (94)
T PF12862_consen 7 NALRSGDYSEALDALHRYFDYAKQSNNSSS---NSGLAYALLNLAELHRRFGHYEEALQALEEAIRLA 71 (94)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhhcccchh---hHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 345789999999999999888432222221 11223367789999999999999999999999884
No 290
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=94.79 E-value=1.1 Score=44.82 Aligned_cols=138 Identities=18% Similarity=0.144 Sum_probs=97.8
Q ss_pred hHHHHHHHHHHHHcC----CCCChHHHHHHHHhhCCCChHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHhhhcCCCC
Q 008887 369 PKELIALSVKFLSKG----DKERPIPLLQLALNKEPDNINALILMGQTQLQ----KGLLEEAVEYLECAISKLFLAGHPT 440 (550)
Q Consensus 369 ~~~l~~la~~~~~~g----~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~----~g~~~eA~~~~~~al~l~~~~~~p~ 440 (550)
+.....++..+.... +..+|..+|+.+ .+..++.+.+.+|..|.. ..|..+|..+|+++.+.. ++.
T Consensus 73 ~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~--a~~g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g----~~~ 146 (292)
T COG0790 73 AAALALLGQMYGAGKGVSRDKTKAADWYRCA--AADGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLG----NVE 146 (292)
T ss_pred hHHHHHHHHHHHhccCccccHHHHHHHHHHH--hhcccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcC----Chh
Confidence 345567777666554 455688888843 456788899999999987 559999999999998882 111
Q ss_pred ChhhHHHHHHHHHHHHHHHHHh-----c--CHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHh----cCCHHH
Q 008887 441 EPEAIDLLIVASQWSGVACIRQ-----E--KWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCN----VGRNAE 509 (550)
Q Consensus 441 ~~~~~~~l~~a~~~lg~~~~~~-----g--~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~----~g~~~e 509 (550)
. . .+.+.+|.++..- - +..+|...|+++.+...+ .+...+|.+|.. ..+.++
T Consensus 147 a--~-----~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~~~----------~a~~~lg~~y~~G~Gv~~d~~~ 209 (292)
T COG0790 147 A--A-----LAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELGNP----------DAQLLLGRMYEKGLGVPRDLKK 209 (292)
T ss_pred H--H-----HHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhcCH----------HHHHHHHHHHHcCCCCCcCHHH
Confidence 1 0 1355677776653 1 334799999998877522 789999988864 348899
Q ss_pred HHHHHHHHHHcCCCcHHHHHHH
Q 008887 510 AEKYLRLAAAHNPQYNELLEQL 531 (550)
Q Consensus 510 A~~~l~~al~~~p~~~~~~~~l 531 (550)
|...|.++.+... ......+
T Consensus 210 A~~wy~~Aa~~g~--~~a~~~~ 229 (292)
T COG0790 210 AFRWYKKAAEQGD--GAACYNL 229 (292)
T ss_pred HHHHHHHHHHCCC--HHHHHHH
Confidence 9999999998766 4444333
No 291
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=94.71 E-value=0.85 Score=40.25 Aligned_cols=62 Identities=19% Similarity=0.180 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 008887 371 ELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISK 432 (550)
Q Consensus 371 ~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l 432 (550)
.+.+........++.+++..++...--+.|+.++.-..-|.++...|+|++|+..+++..+.
T Consensus 12 gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 12 GLIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSS 73 (153)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhcc
Confidence 34466666677889999888888888889999999999999999999999999999888666
No 292
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=94.71 E-value=0.34 Score=44.71 Aligned_cols=103 Identities=17% Similarity=0.103 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHcCCCCChHHHHHHHHhhCCC---ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHH
Q 008887 371 ELIALSVKFLSKGDKERPIPLLQLALNKEPD---NINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDL 447 (550)
Q Consensus 371 ~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~---~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~ 447 (550)
.+.++|..|.+.||+++|++.|.++.+..-. -.+.+..+-.+....++|.....+..++-.... ...+.+.
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~---~~~d~~~--- 111 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIE---KGGDWER--- 111 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHh---ccchHHH---
Confidence 4558999999999999999999998875432 356778899999999999999999999988842 1112211
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCC
Q 008887 448 LIVASQWSGVACIRQEKWEEGIAHLERIGNLK 479 (550)
Q Consensus 448 l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~ 479 (550)
.......-|..+..+++|.+|.+.|-.+....
T Consensus 112 ~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~t~ 143 (177)
T PF10602_consen 112 RNRLKVYEGLANLAQRDFKEAAELFLDSLSTF 143 (177)
T ss_pred HHHHHHHHHHHHHHhchHHHHHHHHHccCcCC
Confidence 11133356778888999999999998765543
No 293
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=94.60 E-value=0.43 Score=41.22 Aligned_cols=72 Identities=11% Similarity=0.185 Sum_probs=55.0
Q ss_pred ChHHHHHHHHHHHHcCCH---HHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcC
Q 008887 402 NINALILMGQTQLQKGLL---EEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNL 478 (550)
Q Consensus 402 ~~~a~~~lg~~~~~~g~~---~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~ 478 (550)
..+..+++++++.+..+. .+.+..+++.++.. +|... . +..|.++..+++.|+|++++.+++..++.
T Consensus 31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~----~~~~r-R-----e~lyYLAvg~yRlkeY~~s~~yvd~ll~~ 100 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSA----HPERR-R-----ECLYYLAVGHYRLKEYSKSLRYVDALLET 100 (149)
T ss_pred hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhc----Ccccc-h-----hhhhhhHHHHHHHhhHHHHHHHHHHHHhh
Confidence 456788888888876654 46788888887631 44444 2 26778999999999999999999999999
Q ss_pred CCCCCc
Q 008887 479 KEPEEP 484 (550)
Q Consensus 479 ~~p~~~ 484 (550)
+ |++.
T Consensus 101 e-~~n~ 105 (149)
T KOG3364|consen 101 E-PNNR 105 (149)
T ss_pred C-CCcH
Confidence 7 7776
No 294
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=94.53 E-value=0.67 Score=41.54 Aligned_cols=84 Identities=23% Similarity=0.335 Sum_probs=68.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCC
Q 008887 404 NALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEE 483 (550)
Q Consensus 404 ~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~ 483 (550)
..+.....+-...++.+++...++..-.+ .|..++ .-..-|..++..|++++|+..++.+.+.. +..
T Consensus 11 ~gLie~~~~al~~~~~~D~e~lL~ALrvL-----RP~~~e-------~~~~~~~l~i~r~~w~dA~rlLr~l~~~~-~~~ 77 (160)
T PF09613_consen 11 GGLIEVLSVALRLGDPDDAEALLDALRVL-----RPEFPE-------LDLFDGWLHIVRGDWDDALRLLRELEERA-PGF 77 (160)
T ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHh-----CCCchH-------HHHHHHHHHHHhCCHHHHHHHHHHHhccC-CCC
Confidence 45667777788889999999999776666 787772 33457899999999999999999987775 766
Q ss_pred ccccccchhHHHHHHHHHHhcCCH
Q 008887 484 PKSKAHYYDGLVVLASALCNVGRN 507 (550)
Q Consensus 484 ~~~~~~~~~~~~~La~~~~~~g~~ 507 (550)
+ .+--.++.|+...|+.
T Consensus 78 p-------~~kALlA~CL~~~~D~ 94 (160)
T PF09613_consen 78 P-------YAKALLALCLYALGDP 94 (160)
T ss_pred h-------HHHHHHHHHHHHcCCh
Confidence 6 7788899999988875
No 295
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=94.44 E-value=1 Score=46.60 Aligned_cols=119 Identities=19% Similarity=0.202 Sum_probs=82.9
Q ss_pred HHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCC------------------CChhhHHHHHHHH
Q 008887 391 LLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHP------------------TEPEAIDLLIVAS 452 (550)
Q Consensus 391 ~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p------------------~~~~~~~~l~~a~ 452 (550)
.+-..|+.+|-+.+++..++.++.++|+.+.|.+.+++|+-....+-.| ..+ .+..+..+.
T Consensus 28 ~l~~ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~-eNR~fflal 106 (360)
T PF04910_consen 28 ALINLLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRP-ENRQFFLAL 106 (360)
T ss_pred HHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccc-cchHHHHHH
Confidence 3445568899999999999999999999999999999987543111111 122 222233377
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHhcCCCCC-CccccccchhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008887 453 QWSGVACIRQEKWEEGIAHLERIGNLKEPE-EPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLA 517 (550)
Q Consensus 453 ~~lg~~~~~~g~~~eA~~~~~~al~~~~p~-~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~a 517 (550)
+.....+.+.|.+.-|.++++-.+.++ |. |+ ..+.+.+-....+.++++--++.++..
T Consensus 107 ~r~i~~L~~RG~~rTAlE~~KlLlsLd-p~~DP------~g~ll~ID~~ALrs~~y~~Li~~~~~~ 165 (360)
T PF04910_consen 107 FRYIQSLGRRGCWRTALEWCKLLLSLD-PDEDP------LGVLLFIDYYALRSRQYQWLIDFSESP 165 (360)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHhcC-CCCCc------chhHHHHHHHHHhcCCHHHHHHHHHhH
Confidence 778888999999999999999999998 76 76 123333334445566665555555543
No 296
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=94.43 E-value=1.4 Score=43.82 Aligned_cols=132 Identities=13% Similarity=0.060 Sum_probs=98.0
Q ss_pred ChHHHHHHHHHHHH----cCCCCChHHHHHHHHhhCCCC-hHHHHHHHHHHHHcC-------CHHHHHHHHHHHHHHhhh
Q 008887 368 TPKELIALSVKFLS----KGDKERPIPLLQLALNKEPDN-INALILMGQTQLQKG-------LLEEAVEYLECAISKLFL 435 (550)
Q Consensus 368 ~~~~l~~la~~~~~----~g~~~~A~~~~~~aL~~~p~~-~~a~~~lg~~~~~~g-------~~~eA~~~~~~al~l~~~ 435 (550)
.+...+++|..+.. ..|+.+|..+|+++.+..-.. ..+.+.+|..|..-+ +...|...|+++....
T Consensus 108 ~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~-- 185 (292)
T COG0790 108 LAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG-- 185 (292)
T ss_pred cHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc--
Confidence 56677789988887 448889999999998875433 345888888887642 2337888888887771
Q ss_pred cCCCCChhhHHHHHHHHHHHHHHHHH----hcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcC------
Q 008887 436 AGHPTEPEAIDLLIVASQWSGVACIR----QEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVG------ 505 (550)
Q Consensus 436 ~~~p~~~~~~~~l~~a~~~lg~~~~~----~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g------ 505 (550)
++ .+.+.+|.+|.. ..++++|..+|.++.+.. . . .+.+.++ ++...|
T Consensus 186 -----~~-------~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g-~--~-------~a~~~~~-~~~~~g~g~~~~ 242 (292)
T COG0790 186 -----NP-------DAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQG-D--G-------AACYNLG-LMYLNGEGVKKA 242 (292)
T ss_pred -----CH-------HHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC-C--H-------HHHHHHH-HHHhcCCCchhh
Confidence 22 266778888754 458899999999999986 2 3 7888888 777666
Q ss_pred ---------CHHHHHHHHHHHHHcCCCc
Q 008887 506 ---------RNAEAEKYLRLAAAHNPQY 524 (550)
Q Consensus 506 ---------~~~eA~~~l~~al~~~p~~ 524 (550)
+...|...+..+-......
T Consensus 243 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 270 (292)
T COG0790 243 AFLTAAKEEDKKQALEWLQKACELGFDN 270 (292)
T ss_pred hhcccccCCCHHHHHHHHHHHHHcCChh
Confidence 7788888888777655443
No 297
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=94.39 E-value=0.077 Score=32.30 Aligned_cols=29 Identities=38% Similarity=0.513 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 008887 404 NALILMGQTQLQKGLLEEAVEYLECAISK 432 (550)
Q Consensus 404 ~a~~~lg~~~~~~g~~~eA~~~~~~al~l 432 (550)
.+++.+|.++...|++++|+.+++++++.
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~ 30 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALEL 30 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 46778888888888888888888888877
No 298
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=94.32 E-value=0.63 Score=47.34 Aligned_cols=127 Identities=16% Similarity=0.051 Sum_probs=91.9
Q ss_pred CCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHHhcC
Q 008887 385 KERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEK 464 (550)
Q Consensus 385 ~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~g~ 464 (550)
.+.-+..|++||+.+|++...+..+-.+..+..+.++..+-+++++.. +|++..- ...|...-........
T Consensus 47 ~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~-----~~~~~~L----W~~yL~~~q~~~~~f~ 117 (321)
T PF08424_consen 47 AERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFK-----NPGSPEL----WREYLDFRQSNFASFT 117 (321)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH-----CCCChHH----HHHHHHHHHHHhccCc
Confidence 345678999999999999999999988999999999999999999999 7765522 1122222222233446
Q ss_pred HHHHHHHHHHHhcCCCCCCc-----------cccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 008887 465 WEEGIAHLERIGNLKEPEEP-----------KSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHN 521 (550)
Q Consensus 465 ~~eA~~~~~~al~~~~p~~~-----------~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~ 521 (550)
+++....|.++++.- .... ............+.....+.|-.+.|+..++..+++|
T Consensus 118 v~~~~~~y~~~l~~L-~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n 184 (321)
T PF08424_consen 118 VSDVRDVYEKCLRAL-SRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFN 184 (321)
T ss_pred HHHHHHHHHHHHHHH-HHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHH
Confidence 777777777777542 1111 1112355667777888899999999999999999988
No 299
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=94.27 E-value=3 Score=41.42 Aligned_cols=135 Identities=19% Similarity=0.152 Sum_probs=91.2
Q ss_pred HHHcCCCCChHHHHHHHHhhC----CCC----hHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHhhh--cCCCCChhhHHH
Q 008887 379 FLSKGDKERPIPLLQLALNKE----PDN----INALILMGQTQLQKG-LLEEAVEYLECAISKLFL--AGHPTEPEAIDL 447 (550)
Q Consensus 379 ~~~~g~~~~A~~~~~~aL~~~----p~~----~~a~~~lg~~~~~~g-~~~eA~~~~~~al~l~~~--~~~p~~~~~~~~ 447 (550)
...+||++.|..++.++-... |+. .+.+++.|......+ ++++|..+++++.++... ..+...++..+.
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el 82 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL 82 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence 357899999999999986533 433 456788999999999 999999999999998422 112333333334
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHH---HHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 008887 448 LIVASQWSGVACIRQEKWEEGIA---HLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHN 521 (550)
Q Consensus 448 l~~a~~~lg~~~~~~g~~~eA~~---~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~ 521 (550)
.......++.+|...+.++...+ ..+.+-... ++.+ ..+...-++..+.++.+++.+.+.+.+..-
T Consensus 83 r~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-~~~~-------~~~~L~l~il~~~~~~~~~~~~L~~mi~~~ 151 (278)
T PF08631_consen 83 RLSILRLLANAYLEWDTYESVEKALNALRLLESEY-GNKP-------EVFLLKLEILLKSFDEEEYEEILMRMIRSV 151 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-CCCc-------HHHHHHHHHHhccCChhHHHHHHHHHHHhc
Confidence 44467788999998887664433 333332222 3333 555444455555889999999999888743
No 300
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.25 E-value=0.49 Score=50.82 Aligned_cols=101 Identities=7% Similarity=0.104 Sum_probs=76.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCcc
Q 008887 406 LILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPK 485 (550)
Q Consensus 406 ~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~ 485 (550)
+.+-|.-.++.++|..+++.|...+.. -|.+....++ .....+++.||....+.|.|.+++++|-+.+ |..+
T Consensus 357 LWn~A~~~F~~~~Y~~s~~~y~~Sl~~-----i~~D~~~~~F-aK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d-~~~~- 428 (872)
T KOG4814|consen 357 LWNTAKKLFKMEKYVVSIRFYKLSLKD-----IISDNYSDRF-AKIQRALQVCYLKLEQLDNAVEVYQEAEEVD-RQSP- 428 (872)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHh-----ccchhhhhHH-HHHHHHHHHHHhhHHHHHHHHHHHHHHHhhc-cccH-
Confidence 445566777888889999999888888 6777644444 4577788889999999999999999888876 7666
Q ss_pred ccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 008887 486 SKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAH 520 (550)
Q Consensus 486 ~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~ 520 (550)
-.....-.+....|+-++|..+.......
T Consensus 429 ------l~q~~~~~~~~~E~~Se~AL~~~~~~~s~ 457 (872)
T KOG4814|consen 429 ------LCQLLMLQSFLAEDKSEEALTCLQKIKSS 457 (872)
T ss_pred ------HHHHHHHHHHHHhcchHHHHHHHHHHHhh
Confidence 55556666667778888888877765543
No 301
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=94.25 E-value=0.76 Score=47.01 Aligned_cols=131 Identities=15% Similarity=0.132 Sum_probs=97.0
Q ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChh-hHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhc
Q 008887 399 EPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPE-AIDLLIVASQWSGVACIRQEKWEEGIAHLERIGN 477 (550)
Q Consensus 399 ~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~-~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~ 477 (550)
..+....+...+.+..+.|+++.|..++.++... ++.... .. ...+..+..+...|+.++|+..+++.++
T Consensus 142 ~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~-----~~~~~~~~~----~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 142 PEELAETWLKFAKLARKAGNFQLALSALNRLFQL-----NPSSESLLP----RVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred hhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhcc-----CCcccCCCc----chHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3456788999999999999999999999998876 321110 11 1444578999999999999999998887
Q ss_pred -CCCCC-------------------------CccccccchhHHHHHHHHHHhc------CCHHHHHHHHHHHHHcCCCcH
Q 008887 478 -LKEPE-------------------------EPKSKAHYYDGLVVLASALCNV------GRNAEAEKYLRLAAAHNPQYN 525 (550)
Q Consensus 478 -~~~p~-------------------------~~~~~~~~~~~~~~La~~~~~~------g~~~eA~~~l~~al~~~p~~~ 525 (550)
..... ..........++..+|...... ++.+++...|+++.+++|+..
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 292 (352)
T PF02259_consen 213 CRLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWE 292 (352)
T ss_pred HHhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHH
Confidence 21011 1111123567788888888777 899999999999999999999
Q ss_pred HHHHHHHhhHHHH
Q 008887 526 ELLEQLENNDEEF 538 (550)
Q Consensus 526 ~~~~~l~~~~~~~ 538 (550)
+.+..+.......
T Consensus 293 k~~~~~a~~~~~~ 305 (352)
T PF02259_consen 293 KAWHSWALFNDKL 305 (352)
T ss_pred HHHHHHHHHHHHH
Confidence 9888777644333
No 302
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=94.09 E-value=0.32 Score=37.84 Aligned_cols=65 Identities=17% Similarity=0.201 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHH---HHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 008887 370 KELIALSVKFLSKGDKERPIPLLQLALNKEPDNINA---LILMGQTQLQKGLLEEAVEYLECAISKLF 434 (550)
Q Consensus 370 ~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a---~~~lg~~~~~~g~~~eA~~~~~~al~l~~ 434 (550)
+...+.|..++.+.+.++|+...+++|+..++.... +-.+..+|...|+|++.+++..+=+++..
T Consensus 7 k~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~A~ 74 (80)
T PF10579_consen 7 KQQIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEIAE 74 (80)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455688889999999999999999999988776554 44566788999999999988777666643
No 303
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=94.09 E-value=0.43 Score=55.42 Aligned_cols=150 Identities=16% Similarity=0.062 Sum_probs=115.2
Q ss_pred ChHHHHHHHHHHHHcCCCCChHH------HHHHHHh-hCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCC
Q 008887 368 TPKELIALSVKFLSKGDKERPIP------LLQLALN-KEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPT 440 (550)
Q Consensus 368 ~~~~l~~la~~~~~~g~~~~A~~------~~~~aL~-~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~ 440 (550)
..++..+.+......|.+.+|.+ ++.+... ..|+...++..++.++.+.|++++|+..-+++.-.......-+
T Consensus 931 ~a~~~~e~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~d 1010 (1236)
T KOG1839|consen 931 EAKDSPEQGQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKD 1010 (1236)
T ss_pred hhhhhhhhhhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCC
Confidence 44566688888888888887777 5553333 5788999999999999999999999999888765532222223
Q ss_pred ChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 008887 441 EPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAH 520 (550)
Q Consensus 441 ~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~ 520 (550)
.++. ...+.+++...+..++...|...+.++.....=...++|+..+....+++.++...++++.|..+++.++..
T Consensus 1011 s~~t----~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~ 1086 (1236)
T KOG1839|consen 1011 SPNT----KLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAK 1086 (1236)
T ss_pred CHHH----HHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 3322 236778888888999999999999998876534445567777788889999999999999999999999986
Q ss_pred C
Q 008887 521 N 521 (550)
Q Consensus 521 ~ 521 (550)
+
T Consensus 1087 ~ 1087 (1236)
T KOG1839|consen 1087 N 1087 (1236)
T ss_pred H
Confidence 5
No 304
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=94.03 E-value=0.12 Score=37.29 Aligned_cols=40 Identities=28% Similarity=0.270 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHH
Q 008887 371 ELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMG 410 (550)
Q Consensus 371 ~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg 410 (550)
-++.+|..+++.|+|++|..+.+.+|+.+|++..+.....
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~ 42 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKE 42 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHH
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHH
Confidence 3456666667777777777777777777777666554433
No 305
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=94.01 E-value=0.35 Score=48.09 Aligned_cols=110 Identities=22% Similarity=0.225 Sum_probs=80.2
Q ss_pred HHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHhcCCC---CCC---cc
Q 008887 413 QLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQE-KWEEGIAHLERIGNLKE---PEE---PK 485 (550)
Q Consensus 413 ~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~g-~~~eA~~~~~~al~~~~---p~~---~~ 485 (550)
..+.||++.|..++.|+-... +..++.....+....|+.|......+ ++++|..+++++.+.-+ ..+ +.
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~----~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~ 78 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLL----NSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPD 78 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHH----hcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCc
Confidence 347899999999999998873 25566677778889999999999999 99999999999998731 111 11
Q ss_pred ccccchhHHHHHHHHHHhcCCHHH---HHHHHHHHHHcCCCcHH
Q 008887 486 SKAHYYDGLVVLASALCNVGRNAE---AEKYLRLAAAHNPQYNE 526 (550)
Q Consensus 486 ~~~~~~~~~~~La~~~~~~g~~~e---A~~~l~~al~~~p~~~~ 526 (550)
...-...++..++.+|.+.+.++. |....+.+-...|+...
T Consensus 79 ~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~ 122 (278)
T PF08631_consen 79 GSELRLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPE 122 (278)
T ss_pred HHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcH
Confidence 112256788899999999887654 44444444444466554
No 306
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=93.86 E-value=0.51 Score=54.38 Aligned_cols=103 Identities=17% Similarity=0.173 Sum_probs=77.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHHh----c---CHHHHHHHHHHHhcCCCC
Q 008887 409 MGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQ----E---KWEEGIAHLERIGNLKEP 481 (550)
Q Consensus 409 lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~----g---~~~eA~~~~~~al~~~~p 481 (550)
...++...+.|++|+..|++..+- .|...+.. ++.+..|..+.++ | .+++|+..|++.-.. +
T Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 549 (932)
T PRK13184 481 VPDAFLAEKLYDQALIFYRRIRES-----FPGRKEGY----EAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHGG--V 549 (932)
T ss_pred CcHHHHhhHHHHHHHHHHHHHhhc-----CCCcccch----HHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcCC--C
Confidence 456677778888888888888777 66655444 4666677776543 2 578888888885443 5
Q ss_pred CCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHHHH
Q 008887 482 EEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLE 529 (550)
Q Consensus 482 ~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~ 529 (550)
.-+ --|...|.+|.++|+++|-+++|.-+++..|++++.-.
T Consensus 550 ~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 590 (932)
T PRK13184 550 GAP-------LEYLGKALVYQRLGEYNEEIKSLLLALKRYSQHPEISR 590 (932)
T ss_pred CCc-------hHHHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCccHH
Confidence 555 66778888899999999999999999999988887433
No 307
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=93.85 E-value=0.075 Score=49.97 Aligned_cols=62 Identities=15% Similarity=0.071 Sum_probs=55.8
Q ss_pred HHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHH
Q 008887 457 VACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNE 526 (550)
Q Consensus 457 ~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~ 526 (550)
....+.++.+.|.+.|.+++++. |+.. ..|+.+|....+.|+.+.|.+.|++.++++|++..
T Consensus 3 ~~~~~~~D~~aaaely~qal~la-p~w~-------~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~~ 64 (287)
T COG4976 3 YMLAESGDAEAAAELYNQALELA-PEWA-------AGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDHG 64 (287)
T ss_pred chhcccCChHHHHHHHHHHhhcC-chhh-------hhhhhcchhhhhcccHHHHHHHHHHHHcCCccccc
Confidence 34567899999999999999998 8777 89999999999999999999999999999987643
No 308
>PRK10941 hypothetical protein; Provisional
Probab=93.74 E-value=0.33 Score=47.85 Aligned_cols=64 Identities=16% Similarity=0.193 Sum_probs=61.5
Q ss_pred HHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCCh
Q 008887 374 ALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEP 442 (550)
Q Consensus 374 ~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~ 442 (550)
++=..|.+.++++.|+.+.+..+..+|+++.-+...|.+|.+.|.+..|...++..++. .|.++
T Consensus 186 nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~-----~P~dp 249 (269)
T PRK10941 186 TLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQ-----CPEDP 249 (269)
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh-----CCCch
Confidence 67778999999999999999999999999999999999999999999999999999999 99888
No 309
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=93.72 E-value=2 Score=42.76 Aligned_cols=57 Identities=14% Similarity=0.158 Sum_probs=45.3
Q ss_pred HHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 008887 374 ALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISK 432 (550)
Q Consensus 374 ~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l 432 (550)
++-+...+..+..+-++....||+++|+++.++..++.-- ..-..+|.+.+++|++.
T Consensus 189 eIMQ~AWRERnp~~RI~~A~~ALeIN~eCA~AyvLLAEEE--a~Ti~~AE~l~k~ALka 245 (556)
T KOG3807|consen 189 EIMQKAWRERNPPARIKAAYQALEINNECATAYVLLAEEE--ATTIVDAERLFKQALKA 245 (556)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHhcCchhhhHHHhhhhhh--hhhHHHHHHHHHHHHHH
Confidence 5666777888888889999999999999999999888633 23456788888888766
No 310
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=93.71 E-value=0.45 Score=50.57 Aligned_cols=120 Identities=14% Similarity=0.012 Sum_probs=76.7
Q ss_pred HHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHHhcCHHHHH
Q 008887 390 PLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGI 469 (550)
Q Consensus 390 ~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~ 469 (550)
.....+++.++.+.-.+..-+..+..+|+..+|+.++..++-. .+.+.++. ....+|.++.+.|...+|-
T Consensus 200 ~~~~~glq~~~~sw~lH~~as~YWR~~G~~~~A~~Ca~~a~hf-----~~~h~kdi-----~lLSlaTiL~RaG~sadA~ 269 (886)
T KOG4507|consen 200 HLIHEGLQKNTSSWVLHNMASFYWRIKGEPYQAVECAMRALHF-----SSRHNKDI-----ALLSLATVLHRAGFSADAA 269 (886)
T ss_pred HHHHHhhhcCchhHHHHHHHHHHHHHcCChhhhhHHHHHHhhh-----CCcccccc-----hhhhHHHHHHHcccccchh
Confidence 3444555566666555555555556777777777777777777 44443332 4445777777777777777
Q ss_pred HHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHH
Q 008887 470 AHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNEL 527 (550)
Q Consensus 470 ~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~ 527 (550)
-.+-.|++-. +... .-++.++.++...|++......|..+.+.+|.+...
T Consensus 270 iILhAA~~dA-~~~t-------~n~y~l~~i~aml~~~N~S~~~ydha~k~~p~f~q~ 319 (886)
T KOG4507|consen 270 VILHAALDDA-DFFT-------SNYYTLGNIYAMLGEYNHSVLCYDHALQARPGFEQA 319 (886)
T ss_pred heeehhccCC-cccc-------ccceeHHHHHHHHhhhhhhhhhhhhhhccCcchhHH
Confidence 7666555554 4433 446677777777777777777777777777665543
No 311
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=93.64 E-value=1.2 Score=35.96 Aligned_cols=76 Identities=16% Similarity=0.114 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHH
Q 008887 422 AVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASAL 501 (550)
Q Consensus 422 A~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~ 501 (550)
.+..+++.++. +|.+. . +.+.+|..+...|++++|++.+-++++.+ ++.. ...+...+-.++
T Consensus 7 ~~~al~~~~a~-----~P~D~-~------ar~~lA~~~~~~g~~e~Al~~Ll~~v~~d-r~~~-----~~~ar~~ll~~f 68 (90)
T PF14561_consen 7 DIAALEAALAA-----NPDDL-D------ARYALADALLAAGDYEEALDQLLELVRRD-RDYE-----DDAARKRLLDIF 68 (90)
T ss_dssp HHHHHHHHHHH-----STT-H-H------HHHHHHHHHHHTT-HHHHHHHHHHHHCC--TTCC-----CCHHHHHHHHHH
T ss_pred cHHHHHHHHHc-----CCCCH-H------HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccc-----ccHHHHHHHHHH
Confidence 35567788888 88887 3 78889999999999999999999999986 5442 114555666666
Q ss_pred HhcCCHHHHHHHHH
Q 008887 502 CNVGRNAEAEKYLR 515 (550)
Q Consensus 502 ~~~g~~~eA~~~l~ 515 (550)
..+|.-+.-...|+
T Consensus 69 ~~lg~~~plv~~~R 82 (90)
T PF14561_consen 69 ELLGPGDPLVSEYR 82 (90)
T ss_dssp HHH-TT-HHHHHHH
T ss_pred HHcCCCChHHHHHH
Confidence 66666444433333
No 312
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=93.48 E-value=0.16 Score=33.97 Aligned_cols=31 Identities=32% Similarity=0.209 Sum_probs=27.2
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 008887 491 YDGLVVLASALCNVGRNAEAEKYLRLAAAHN 521 (550)
Q Consensus 491 ~~~~~~La~~~~~~g~~~eA~~~l~~al~~~ 521 (550)
+.++.++|.+|...|++++|..++++++++.
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 32 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEIR 32 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHHH
Confidence 3678999999999999999999999998864
No 313
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=93.45 E-value=1.1 Score=45.97 Aligned_cols=124 Identities=18% Similarity=0.171 Sum_probs=89.0
Q ss_pred CChHHHHHHHHHHHHcCCCCChHHHHHHHHhh----CCCChHHHHHHHHHHHH---cCCHHHHHHHHHHHHHHhhhcCCC
Q 008887 367 LTPKELIALSVKFLSKGDKERPIPLLQLALNK----EPDNINALILMGQTQLQ---KGLLEEAVEYLECAISKLFLAGHP 439 (550)
Q Consensus 367 l~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~----~p~~~~a~~~lg~~~~~---~g~~~eA~~~~~~al~l~~~~~~p 439 (550)
++++.+.++=..|..-.+|+.-+++.+..-.. .++.....+.+|-++-+ .|+.++|++.+..++... .+
T Consensus 139 ls~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~----~~ 214 (374)
T PF13281_consen 139 LSPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESD----EN 214 (374)
T ss_pred cChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhcc----CC
Confidence 67778888888999999999999998887665 45677888899999999 999999999999876552 33
Q ss_pred CChhhHHHHHHHHHHHHHHHH---------HhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHH
Q 008887 440 TEPEAIDLLIVASQWSGVACI---------RQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEA 510 (550)
Q Consensus 440 ~~~~~~~~l~~a~~~lg~~~~---------~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA 510 (550)
.++ + .+.-+|.+|. .....++|+++|+++.+.+ ++. ..=.+++.++...|...+.
T Consensus 215 ~~~---d----~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~-~~~--------Y~GIN~AtLL~~~g~~~~~ 278 (374)
T PF13281_consen 215 PDP---D----TLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIE-PDY--------YSGINAATLLMLAGHDFET 278 (374)
T ss_pred CCh---H----HHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCC-ccc--------cchHHHHHHHHHcCCcccc
Confidence 343 2 2223555543 2345889999999999996 432 2344556666666654333
No 314
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=93.19 E-value=0.76 Score=50.82 Aligned_cols=123 Identities=15% Similarity=0.068 Sum_probs=79.0
Q ss_pred HHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHH
Q 008887 374 ALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQ 453 (550)
Q Consensus 374 ~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~ 453 (550)
..|......|-.++|+.+|+++-+ +-.+-..|...|.|++|.+..+.-=++ +- ...||
T Consensus 805 kvAvLAieLgMlEeA~~lYr~ckR--------~DLlNKlyQs~g~w~eA~eiAE~~DRi--------HL------r~Tyy 862 (1416)
T KOG3617|consen 805 KVAVLAIELGMLEEALILYRQCKR--------YDLLNKLYQSQGMWSEAFEIAETKDRI--------HL------RNTYY 862 (1416)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHH--------HHHHHHHHHhcccHHHHHHHHhhccce--------eh------hhhHH
Confidence 455556667777777777777633 234556677778888777655332222 11 12788
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHhcCC---------CCCCcc---ccccchhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008887 454 WSGVACIRQEKWEEGIAHLERIGNLK---------EPEEPK---SKAHYYDGLVVLASALCNVGRNAEAEKYLRLAA 518 (550)
Q Consensus 454 ~lg~~~~~~g~~~eA~~~~~~al~~~---------~p~~~~---~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al 518 (550)
+.+.-+...++.+.|+++|+|+-.-. +|...+ .+...-..|...|.-+...|+.|.|+.+|..+-
T Consensus 863 ~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~ 939 (1416)
T KOG3617|consen 863 NYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAK 939 (1416)
T ss_pred HHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhh
Confidence 88999999999999999999753210 011000 000112567788888899999999999888763
No 315
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=92.97 E-value=1.6 Score=46.80 Aligned_cols=140 Identities=21% Similarity=0.128 Sum_probs=101.2
Q ss_pred HHHHcCCCCC-hHHHHHHHHhhCCCChHHHHH--HHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHH
Q 008887 378 KFLSKGDKER-PIPLLQLALNKEPDNINALIL--MGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQW 454 (550)
Q Consensus 378 ~~~~~g~~~~-A~~~~~~aL~~~p~~~~a~~~--lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~ 454 (550)
..+..+.... ++..+...+..++.++..+.. +...+...++...+...++.++.. +|.+. .+..+
T Consensus 39 ~~l~~~~~~~~~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~-----~~~~~-------~~~~~ 106 (620)
T COG3914 39 EWLNAEGLQALAIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSV-----NPENC-------PAVQN 106 (620)
T ss_pred HHhcccCchhHHHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhc-----Ccccc-------hHHHH
Confidence 3344444443 666666667788888776433 577778889998999999999988 77665 26778
Q ss_pred HHHHHHHhcCHHHHHHHHHH-HhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHHHHHH
Q 008887 455 SGVACIRQEKWEEGIAHLER-IGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQL 531 (550)
Q Consensus 455 lg~~~~~~g~~~eA~~~~~~-al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~l 531 (550)
++.+....|....+...+.+ +.+.. |++..-..+....+. +++....+|+..++....+++....|.+.+....+
T Consensus 107 L~~ale~~~~~~~~~~~~~~~a~~~~-~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~ 182 (620)
T COG3914 107 LAAALELDGLQFLALADISEIAEWLS-PDNAEFLGHLIRFYQ-LGRYLKLLGRTAEAELALERAVDLLPKYPRVLGAL 182 (620)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhcC-cchHHHHhhHHHHHH-HHHHHHHhccHHHHHHHHHHHHHhhhhhhhhHhHH
Confidence 88888777777777766655 66665 776633333334444 79999999999999999999999999997654443
No 316
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=92.17 E-value=0.49 Score=38.56 Aligned_cols=62 Identities=21% Similarity=0.194 Sum_probs=48.2
Q ss_pred HHHhcCHHHHHHHHHHHhcCCCCCCcccc--ccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 008887 459 CIRQEKWEEGIAHLERIGNLKEPEEPKSK--AHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHN 521 (550)
Q Consensus 459 ~~~~g~~~eA~~~~~~al~~~~p~~~~~~--~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~ 521 (550)
..+.|+|.+|++.+.+..+.. ....... .....+..++|.++...|++++|...+++++++.
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~-~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~A 71 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYA-KQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLA 71 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHH-hhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 457899999999998888765 3222111 1344678899999999999999999999999865
No 317
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=92.08 E-value=0.16 Score=47.90 Aligned_cols=60 Identities=20% Similarity=0.293 Sum_probs=55.3
Q ss_pred HHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCCh
Q 008887 378 KFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEP 442 (550)
Q Consensus 378 ~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~ 442 (550)
.....+|.+.|.++|.++++.-|+....|+.+|....+.|+++.|.+.|++.+++ +|.+.
T Consensus 4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~l-----dp~D~ 63 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLEL-----DPEDH 63 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcC-----Ccccc
Confidence 3466789999999999999999999999999999999999999999999999999 77665
No 318
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=92.08 E-value=2.3 Score=37.61 Aligned_cols=83 Identities=20% Similarity=0.192 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCc
Q 008887 405 ALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEP 484 (550)
Q Consensus 405 a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~ 484 (550)
.+......-...++.+++...+...--+ .|+.++ ....-|..+...|++++|+..+++..+.. +..+
T Consensus 12 gLi~~~~~aL~~~d~~D~e~lLdALrvL-----rP~~~e-------~d~~dg~l~i~rg~w~eA~rvlr~l~~~~-~~~p 78 (153)
T TIGR02561 12 GLIEVLMYALRSADPYDAQAMLDALRVL-----RPNLKE-------LDMFDGWLLIARGNYDEAARILRELLSSA-GAPP 78 (153)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHh-----CCCccc-------cchhHHHHHHHcCCHHHHHHHHHhhhccC-CCch
Confidence 3445555566689999999988766666 787773 33356889999999999999999987775 5545
Q ss_pred cccccchhHHHHHHHHHHhcCCH
Q 008887 485 KSKAHYYDGLVVLASALCNVGRN 507 (550)
Q Consensus 485 ~~~~~~~~~~~~La~~~~~~g~~ 507 (550)
...-.++.|+...||.
T Consensus 79 -------~~kAL~A~CL~al~Dp 94 (153)
T TIGR02561 79 -------YGKALLALCLNAKGDA 94 (153)
T ss_pred -------HHHHHHHHHHHhcCCh
Confidence 6777888888888875
No 319
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=91.53 E-value=3.3 Score=45.51 Aligned_cols=124 Identities=19% Similarity=0.117 Sum_probs=89.3
Q ss_pred HHHHHHHHHHHcC-----CCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHhhhcCCCCCh
Q 008887 371 ELIALSVKFLSKG-----DKERPIPLLQLALNKEPDNINALILMGQTQLQKG---LLEEAVEYLECAISKLFLAGHPTEP 442 (550)
Q Consensus 371 ~l~~la~~~~~~g-----~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g---~~~eA~~~~~~al~l~~~~~~p~~~ 442 (550)
+.+.+|..|.... +++.|..+|.++-+. +++++.+.+|.++..-. +...|.++|..|... .
T Consensus 290 a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~--g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~---------G 358 (552)
T KOG1550|consen 290 AQYGLGRLYLQGLGVEKIDYEKALKLYTKAAEL--GNPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA---------G 358 (552)
T ss_pred cccHHHHHHhcCCCCccccHHHHHHHHHHHHhc--CCchHHHHHHHHHHcCCccccHHHHHHHHHHHHHc---------C
Confidence 4557888888765 455688998888655 57788999999998765 678999999999877 2
Q ss_pred hhHHHHHHHHHHHHHHHHH----hcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhc-CCHHHHHHHHHHH
Q 008887 443 EAIDLLIVASQWSGVACIR----QEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNV-GRNAEAEKYLRLA 517 (550)
Q Consensus 443 ~~~~~l~~a~~~lg~~~~~----~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~-g~~~eA~~~l~~a 517 (550)
.. .+.+++|.||.. ..+.++|..++.++.+.+.+ .+...++..+.-- ++++.+...+...
T Consensus 359 ~~-----~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g~~----------~A~~~~~~~~~~g~~~~~~~~~~~~~~ 423 (552)
T KOG1550|consen 359 HI-----LAIYRLALCYELGLGVERNLELAFAYYKKAAEKGNP----------SAAYLLGAFYEYGVGRYDTALALYLYL 423 (552)
T ss_pred Ch-----HHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHccCh----------hhHHHHHHHHHHccccccHHHHHHHHH
Confidence 12 377789988864 45889999999999988622 4455566554322 7777766655544
Q ss_pred HHc
Q 008887 518 AAH 520 (550)
Q Consensus 518 l~~ 520 (550)
.+.
T Consensus 424 a~~ 426 (552)
T KOG1550|consen 424 AEL 426 (552)
T ss_pred HHh
Confidence 443
No 320
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=91.50 E-value=5.5 Score=44.89 Aligned_cols=114 Identities=18% Similarity=0.050 Sum_probs=87.3
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCC
Q 008887 402 NINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEP 481 (550)
Q Consensus 402 ~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p 481 (550)
++......+.......++++|...+.++-... +.|.+....+.+....--.|.+....|+.++|.++.+.++..- |
T Consensus 414 ~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l---~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L-~ 489 (894)
T COG2909 414 TPRLVLLQAWLLASQHRLAEAETLIARLEHFL---KAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQL-P 489 (894)
T ss_pred CchHHHHHHHHHHHccChHHHHHHHHHHHHHh---CcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhc-c
Confidence 56666778899999999999999999887773 2444443444444344446788899999999999999999886 5
Q ss_pred CCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 008887 482 EEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHN 521 (550)
Q Consensus 482 ~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~ 521 (550)
.+. ......++..+|.+..-.|++++|..+.+++.++.
T Consensus 490 ~~~--~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a 527 (894)
T COG2909 490 EAA--YRSRIVALSVLGEAAHIRGELTQALALMQQAEQMA 527 (894)
T ss_pred ccc--chhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHH
Confidence 443 11234678899999999999999999999888774
No 321
>TIGR03362 VI_chp_7 type VI secretion-associated protein, VC_A0119 family. This protein family is one of two related families in type VI secretion systems that contain an ImpA-related N-terminal domain (pfam06812).
Probab=91.47 E-value=13 Score=37.38 Aligned_cols=135 Identities=15% Similarity=0.177 Sum_probs=91.0
Q ss_pred HHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh-----------hhcCCCCChhhHHHH
Q 008887 380 LSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKL-----------FLAGHPTEPEAIDLL 448 (550)
Q Consensus 380 ~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~-----------~~~~~p~~~~~~~~l 448 (550)
+.+++..+.++..++.+..+|--.+.++..+.++.+.|. +++.+..+..+... +..|.|.-.+.....
T Consensus 110 ~~~~~~~~Ll~~~E~sl~~~pfWLDgq~~~~qal~~lG~-~~~a~aI~~el~~fL~RlP~L~~L~F~DGtPFad~~T~~W 188 (301)
T TIGR03362 110 LAQADWAALLQRVEQSLSLAPFWLDGQRLSAQALERLGY-AAVAQAIRDELAAFLERLPGLLELKFSDGTPFADDETRAW 188 (301)
T ss_pred HhCCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHHHhCcChhhcccCCCCCCCCHHHHHH
Confidence 466777888999999999999999999999999999994 55554444433221 333333322121111
Q ss_pred HH------------------------HHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhc
Q 008887 449 IV------------------------ASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNV 504 (550)
Q Consensus 449 ~~------------------------a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~ 504 (550)
+. ....-+..+...|..++|+..++..+... ..+ ...+...+.+++++.+.
T Consensus 189 L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eA~~l~~~~gl~~Al~~L~~~~~~~--~s~---R~rf~~rL~~A~l~~~~ 263 (301)
T TIGR03362 189 LAQHATRSNAASVAPVAEVGEESDWEELREEARALAAEGGLEAALQRLQQRLAQA--REP---RERFHWRLLLARLLEQA 263 (301)
T ss_pred HHhcccccccccccccccCcccccHHHHHHHHHHHHHcCCHHHHHHHHHhhcccC--CCh---HHHHHHHHHHHHHHHHc
Confidence 10 00112456678889999999998755542 122 24457788899999999
Q ss_pred CCHHHHHHHHHHHHHc
Q 008887 505 GRNAEAEKYLRLAAAH 520 (550)
Q Consensus 505 g~~~eA~~~l~~al~~ 520 (550)
|+++-|...|+...+.
T Consensus 264 g~~~lA~~ll~~L~~~ 279 (301)
T TIGR03362 264 GKAELAQQLYAALDQQ 279 (301)
T ss_pred CCHHHHHHHHHHHHHH
Confidence 9999999999987664
No 322
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=91.34 E-value=2.9 Score=46.63 Aligned_cols=141 Identities=13% Similarity=0.088 Sum_probs=92.1
Q ss_pred ChHHHHHHHHHHH-HcCCCCChHHHHHHHHhhCC--CC----hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCC
Q 008887 368 TPKELIALSVKFL-SKGDKERPIPLLQLALNKEP--DN----INALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPT 440 (550)
Q Consensus 368 ~~~~l~~la~~~~-~~g~~~~A~~~~~~aL~~~p--~~----~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~ 440 (550)
+....+++|..++ ...++++|+.++++++.+.. +. ..+.+.++.++.+.+... |...++++++... +..
T Consensus 58 ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~---~~~ 133 (608)
T PF10345_consen 58 EARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSE---TYG 133 (608)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHh---ccC
Confidence 4445568888777 67899999999999987653 32 234567889998888888 9999999998831 111
Q ss_pred ChhhHHHHHHHHHHH-HHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008887 441 EPEAIDLLIVASQWS-GVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAA 518 (550)
Q Consensus 441 ~~~~~~~l~~a~~~l-g~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al 518 (550)
+..+. .+...+ ...+...+++..|++.+++..... +...+..-...+....+.++...+..+++.+..+++.
T Consensus 134 ~~~w~----~~frll~~~l~~~~~d~~~Al~~L~~~~~~a--~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~ 206 (608)
T PF10345_consen 134 HSAWY----YAFRLLKIQLALQHKDYNAALENLQSIAQLA--NQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAI 206 (608)
T ss_pred chhHH----HHHHHHHHHHHHhcccHHHHHHHHHHHHHHh--hhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHH
Confidence 11111 111112 222223379999999999988874 2222222233444455666777787888888887763
No 323
>COG1422 Predicted membrane protein [Function unknown]
Probab=91.07 E-value=0.61 Score=42.95 Aligned_cols=91 Identities=12% Similarity=0.078 Sum_probs=44.1
Q ss_pred ChHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHhCCCCCCCCCCCcCc----------ccHHHHHHHHHHHhh--hcC
Q 008887 120 FPWWTIIVSSTVALRIAL-LPLIVLQLKKIQRIAELLPRLPPPFPPPLSG----------KRFVDQISLFRREKR--AAG 186 (550)
Q Consensus 120 lpw~~~I~~~t~~vRl~~-lPl~i~~~~~~~k~~~l~p~l~~~~~~~~~~----------~~~~~~~~l~kk~~~--~~g 186 (550)
.|--++|.++++++=+.+ ++= +-.-...||+++|.++++.|++.++. |.+++++++...+.. ..-
T Consensus 44 ~~p~lvilV~avi~gl~~~i~~--~~liD~ekm~~~qk~m~efq~e~~eA~~~~d~~~lkkLq~~qmem~~~Q~elmk~q 121 (201)
T COG1422 44 LPPHLVILVAAVITGLYITILQ--KLLIDQEKMKELQKMMKEFQKEFREAQESGDMKKLKKLQEKQMEMMDDQRELMKMQ 121 (201)
T ss_pred cccHHHHHHHHHHHHHHHHHHH--HHhccHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344566777776666542 321 11123456666666666665443221 123444444443331 112
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHhhh
Q 008887 187 CPSLLWFIASFAIQVPCFLVGVTSIRRMS 215 (550)
Q Consensus 187 ~~~~~~~~l~~l~q~Pifi~~~~~lr~m~ 215 (550)
.+|+. .-.++.||+|.-++.-++...
T Consensus 122 fkPM~---~~~v~tI~~F~Wl~~~~~~~~ 147 (201)
T COG1422 122 FKPML---YISVLTIPFFAWLRWFVGTGG 147 (201)
T ss_pred hhhHH---HHHHHHHHHHHHHHHHHccCc
Confidence 33333 233456777777776666543
No 324
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=91.04 E-value=0.62 Score=49.03 Aligned_cols=98 Identities=14% Similarity=0.041 Sum_probs=75.5
Q ss_pred HHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHH---HHHHHHhhhcCCCCChhhHHHHHH
Q 008887 374 ALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYL---ECAISKLFLAGHPTEPEAIDLLIV 450 (550)
Q Consensus 374 ~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~---~~al~l~~~~~~p~~~~~~~~l~~ 450 (550)
+.|...+..+....|+..|.+++...|+....+.+.+.++++.+-...+...+ ..|+++ +|... .
T Consensus 379 ~egnd~ly~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrl-----n~s~~-------k 446 (758)
T KOG1310|consen 379 TEGNDGLYESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRL-----NPSIQ-------K 446 (758)
T ss_pred hhccchhhhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccC-----ChHHH-------H
Confidence 44555566667778999999999999999999999999999886655544444 445555 33332 4
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCc
Q 008887 451 ASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEP 484 (550)
Q Consensus 451 a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~ 484 (550)
++++|+.++.+.+++.+|+++...+.... |.+.
T Consensus 447 ah~~la~aL~el~r~~eal~~~~alq~~~-Ptd~ 479 (758)
T KOG1310|consen 447 AHFRLARALNELTRYLEALSCHWALQMSF-PTDV 479 (758)
T ss_pred HHHHHHHHHHHHhhHHHhhhhHHHHhhcC-chhh
Confidence 99999999999999999999998777665 7554
No 325
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=90.96 E-value=5.3 Score=44.50 Aligned_cols=126 Identities=17% Similarity=0.094 Sum_probs=85.4
Q ss_pred ChHHHHHHHHhhC---C-CChHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHH
Q 008887 387 RPIPLLQLALNKE---P-DNINALILMGQTQL-QKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIR 461 (550)
Q Consensus 387 ~A~~~~~~aL~~~---p-~~~~a~~~lg~~~~-~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~ 461 (550)
.|+.+++-+++.. | ..+.+++.+|.++. +..++++|+.++++++.+ ...+. ..+....+.+-++.++.+
T Consensus 39 ~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l-----~~~~~-~~d~k~~~~~ll~~i~~~ 112 (608)
T PF10345_consen 39 TAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILL-----CERHR-LTDLKFRCQFLLARIYFK 112 (608)
T ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----ccccc-hHHHHHHHHHHHHHHHHh
Confidence 4677777777422 1 24677889999998 899999999999999998 33322 333333466677888888
Q ss_pred hcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 008887 462 QEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHN 521 (550)
Q Consensus 462 ~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~ 521 (550)
.+... |...++++++.. .+...... ..-..+.....+...+++..|.+.++......
T Consensus 113 ~~~~~-a~~~l~~~I~~~-~~~~~~~w-~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a 169 (608)
T PF10345_consen 113 TNPKA-ALKNLDKAIEDS-ETYGHSAW-YYAFRLLKIQLALQHKDYNAALENLQSIAQLA 169 (608)
T ss_pred cCHHH-HHHHHHHHHHHH-hccCchhH-HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHh
Confidence 88777 999999999875 33221111 11111122333444489999999999887765
No 326
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=90.81 E-value=3.5 Score=38.89 Aligned_cols=62 Identities=18% Similarity=0.201 Sum_probs=55.8
Q ss_pred HHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCCh
Q 008887 376 SVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEP 442 (550)
Q Consensus 376 a~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~ 442 (550)
...++..++.++|+...+.-++..|.+......+-+.|+-.|+|++|...++-+.++ .|++.
T Consensus 8 ~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l-----~p~~t 69 (273)
T COG4455 8 ISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATL-----SPQDT 69 (273)
T ss_pred HHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhc-----Ccccc
Confidence 346788889999999999999999999999999999999999999999999999888 66655
No 327
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=90.45 E-value=3.8 Score=40.17 Aligned_cols=124 Identities=15% Similarity=0.022 Sum_probs=83.2
Q ss_pred CCChHHHHHHHHh-hCCC-----ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHH
Q 008887 385 KERPIPLLQLALN-KEPD-----NINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVA 458 (550)
Q Consensus 385 ~~~A~~~~~~aL~-~~p~-----~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~ 458 (550)
.++-++.+.+.++ ...+ ..+++.++|..|.+.+|.+.+.++.++.++.... .....+.+. .-..+|..
T Consensus 91 neeki~Elde~i~~~eedngE~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~s-----tg~KiDv~l-~kiRlg~~ 164 (412)
T COG5187 91 NEEKIEELDERIREKEEDNGETEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMS-----TGLKIDVFL-CKIRLGLI 164 (412)
T ss_pred hHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHh-----cccchhhHH-HHHHHHHh
Confidence 3344555544444 2222 3688999999999999999999999988877422 122333333 55678888
Q ss_pred HHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008887 459 CIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAA 519 (550)
Q Consensus 459 ~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~ 519 (550)
|..+.-.++.++.....++.. .++.+....-...|.-.....++.+|...+-..+.
T Consensus 165 y~d~~vV~e~lE~~~~~iEkG-----gDWeRrNRyK~Y~Gi~~m~~RnFkeAa~Ll~d~l~ 220 (412)
T COG5187 165 YGDRKVVEESLEVADDIIEKG-----GDWERRNRYKVYKGIFKMMRRNFKEAAILLSDILP 220 (412)
T ss_pred hccHHHHHHHHHHHHHHHHhC-----CCHHhhhhHHHHHHHHHHHHHhhHHHHHHHHHHhc
Confidence 888777788888887777764 22233334445566666677789999988877654
No 328
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=90.37 E-value=0.41 Score=28.73 Aligned_cols=24 Identities=25% Similarity=0.322 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHH
Q 008887 404 NALILMGQTQLQKGLLEEAVEYLE 427 (550)
Q Consensus 404 ~a~~~lg~~~~~~g~~~eA~~~~~ 427 (550)
.+++.+|.++...|++++|...++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 567888889999999998888775
No 329
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=90.23 E-value=4 Score=45.90 Aligned_cols=130 Identities=16% Similarity=0.099 Sum_probs=90.3
Q ss_pred ChHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCC---------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCC
Q 008887 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPD---------NINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGH 438 (550)
Q Consensus 368 ~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~---------~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~ 438 (550)
+|+-....|-......++++|..+..++...-+. .++..-..|.+....|+.++|.++.+.++.. -
T Consensus 414 ~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~-----L 488 (894)
T COG2909 414 TPRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQ-----L 488 (894)
T ss_pred CchHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-----c
Confidence 4444457788889999999999999888763322 2345567889999999999999999999988 3
Q ss_pred CCChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCC
Q 008887 439 PTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGR 506 (550)
Q Consensus 439 p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~ 506 (550)
|.+. ....+ .+...+|.+..-.|++++|..+.+.+.+.. .... .......+....+.++.+.|+
T Consensus 489 ~~~~-~~~r~-~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a-~~~~-~~~l~~~~~~~~s~il~~qGq 552 (894)
T COG2909 489 PEAA-YRSRI-VALSVLGEAAHIRGELTQALALMQQAEQMA-RQHD-VYHLALWSLLQQSEILEAQGQ 552 (894)
T ss_pred cccc-chhhh-hhhhhhhHHHHHhchHHHHHHHHHHHHHHH-HHcc-cHHHHHHHHHHHHHHHHHhhH
Confidence 4333 11111 256678999999999999999998887763 1111 001112334455677888883
No 330
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=89.91 E-value=2 Score=33.56 Aligned_cols=62 Identities=11% Similarity=0.065 Sum_probs=49.3
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 008887 454 WSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAH 520 (550)
Q Consensus 454 ~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~ 520 (550)
.-|.-++.+++.++|+..++++++.. ++.. ..+.++-.+..+|.+.|++++++++--+-+.+
T Consensus 11 e~GlkLY~~~~~~~Al~~W~~aL~k~-~~~~----~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~ 72 (80)
T PF10579_consen 11 EKGLKLYHQNETQQALQKWRKALEKI-TDRE----DRFRVLGYLIQAHMEWGKYREMLAFALQQLEI 72 (80)
T ss_pred HHHHHHhccchHHHHHHHHHHHHhhc-CChH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666778999999999999999986 5443 45578888889999999999999876554443
No 331
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=89.78 E-value=15 Score=35.67 Aligned_cols=131 Identities=11% Similarity=0.054 Sum_probs=81.1
Q ss_pred HHHHHHHHHHHHcC-CCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHhhhcCCCCChhhHHH
Q 008887 370 KELIALSVKFLSKG-DKERPIPLLQLALNKEPDNINALILMGQTQLQKG-LLEEAVEYLECAISKLFLAGHPTEPEAIDL 447 (550)
Q Consensus 370 ~~l~~la~~~~~~g-~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g-~~~eA~~~~~~al~l~~~~~~p~~~~~~~~ 447 (550)
++.+....+-+..+ .-++|+++-+.++..+|.+..+|...-.++.+.+ +..+=++++++.++- +|.+-
T Consensus 43 r~~m~YfRAI~~~~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~-----npKNY----- 112 (318)
T KOG0530|consen 43 RDVMDYFRAIIAKNEKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIED-----NPKNY----- 112 (318)
T ss_pred HHHHHHHHHHHhccccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHh-----Cccch-----
Confidence 34445555444444 4567999999999999999998887776666544 556667777777777 55554
Q ss_pred HHHHHHHHHHHHHHhcCHH-HHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 008887 448 LIVASQWSGVACIRQEKWE-EGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAH 520 (550)
Q Consensus 448 l~~a~~~lg~~~~~~g~~~-eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~ 520 (550)
..|+..-.+....|+.. .-++..++++..+ ..+- -+|...-.+...-+.++.-..+..+.++.
T Consensus 113 --QvWHHRr~ive~l~d~s~rELef~~~~l~~D-aKNY-------HaWshRqW~~r~F~~~~~EL~y~~~Lle~ 176 (318)
T KOG0530|consen 113 --QVWHHRRVIVELLGDPSFRELEFTKLMLDDD-AKNY-------HAWSHRQWVLRFFKDYEDELAYADELLEE 176 (318)
T ss_pred --hHHHHHHHHHHHhcCcccchHHHHHHHHhcc-ccch-------hhhHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 25555555556666666 6666677777665 4333 34444444444444455444444444443
No 332
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.66 E-value=7.8 Score=41.30 Aligned_cols=74 Identities=16% Similarity=0.015 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCC-HHHHHHHHHHHHHcCCCcH
Q 008887 451 ASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGR-NAEAEKYLRLAAAHNPQYN 525 (550)
Q Consensus 451 a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~-~~eA~~~l~~al~~~p~~~ 525 (550)
-+.-+|.++...|+.+.|..+|..+++.. .....+..-+..++|.+|..|...|. .+++.+++.+|-+...++.
T Consensus 451 k~lL~g~~lR~Lg~~~~a~~~f~i~~~~e-~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~~dY~ 525 (546)
T KOG3783|consen 451 KYLLKGVILRNLGDSEVAPKCFKIQVEKE-SKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYASDYE 525 (546)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhccccc
Confidence 34457899999999999999999988654 44445555666999999999999999 9999999999999876653
No 333
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=89.36 E-value=7.6 Score=39.92 Aligned_cols=139 Identities=11% Similarity=0.052 Sum_probs=95.9
Q ss_pred HHHHHcCCCCChHHHHHHHHhhC----C-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHH
Q 008887 377 VKFLSKGDKERPIPLLQLALNKE----P-----DNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDL 447 (550)
Q Consensus 377 ~~~~~~g~~~~A~~~~~~aL~~~----p-----~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~ 447 (550)
...+.++++.+|.+.-+..+..- . -.+..|+.+..+|...|+..+-...+...+..+. -.+.+....
T Consensus 134 Lfl~d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAt----Lrhd~e~qa 209 (493)
T KOG2581|consen 134 LFLIDQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTAT----LRHDEEGQA 209 (493)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhh----hcCcchhHH
Confidence 34455688889888877766521 1 1345678888889899997776666666555531 121111111
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcH
Q 008887 448 LIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYN 525 (550)
Q Consensus 448 l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~ 525 (550)
...+.+-++|...+.|+.|-....+..- |+...+. ..+...+.+|.+-.-+++|..|.+++-.+++..|++.
T Consensus 210 --vLiN~LLr~yL~n~lydqa~~lvsK~~~---pe~~snn-e~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~~ 281 (493)
T KOG2581|consen 210 --VLINLLLRNYLHNKLYDQADKLVSKSVY---PEAASNN-EWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQHA 281 (493)
T ss_pred --HHHHHHHHHHhhhHHHHHHHHHhhcccC---ccccccH-HHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcchh
Confidence 1345677889999999999998887542 3222222 3456788999999999999999999999999999854
No 334
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=89.36 E-value=0.51 Score=28.28 Aligned_cols=25 Identities=40% Similarity=0.442 Sum_probs=22.2
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHH
Q 008887 492 DGLVVLASALCNVGRNAEAEKYLRL 516 (550)
Q Consensus 492 ~~~~~La~~~~~~g~~~eA~~~l~~ 516 (550)
.+.+.+|.++...|+.++|...+++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~~ 26 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLRR 26 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHhC
Confidence 5688999999999999999998763
No 335
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=89.35 E-value=0.61 Score=46.80 Aligned_cols=75 Identities=13% Similarity=0.027 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHHHHH
Q 008887 451 ASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQ 530 (550)
Q Consensus 451 a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~ 530 (550)
.+.+++.+..+.+.+..|+.....+++.+ +... .+++..+..+....++++|.+.++.+...+|++.+..+.
T Consensus 277 ~~~n~~~~~lk~~~~~~a~~~~~~~~~~~-~s~t-------ka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~ 348 (372)
T KOG0546|consen 277 IRRNLAAVGLKVKGRGGARFRTNEALRDE-RSKT-------KAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEE 348 (372)
T ss_pred cccchHHhcccccCCCcceeccccccccC-hhhC-------cHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHH
Confidence 34468889999999999999998888876 7666 899999999999999999999999999999999987777
Q ss_pred HHh
Q 008887 531 LEN 533 (550)
Q Consensus 531 l~~ 533 (550)
+..
T Consensus 349 ~~~ 351 (372)
T KOG0546|consen 349 LEN 351 (372)
T ss_pred HHH
Confidence 665
No 336
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=89.24 E-value=1.7 Score=50.75 Aligned_cols=143 Identities=13% Similarity=0.017 Sum_probs=107.3
Q ss_pred HHHHHHHHHcCCCCChHHHHHHHHhhC--------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhh
Q 008887 373 IALSVKFLSKGDKERPIPLLQLALNKE--------PDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEA 444 (550)
Q Consensus 373 ~~la~~~~~~g~~~~A~~~~~~aL~~~--------p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~ 444 (550)
..++..+...|++++|+..-.++.-.. |+....+.+++...+..++...|...+.++..+.-....|.+|..
T Consensus 977 ~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~ 1056 (1236)
T KOG1839|consen 977 RSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPT 1056 (1236)
T ss_pred HHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCch
Confidence 367788889999999998887775522 556778889999999999999999999999888655556656633
Q ss_pred HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008887 445 IDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAA 519 (550)
Q Consensus 445 ~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~ 519 (550)
. ..-.+++..+...++++.|+++.+.|......-...........+..+++.+..++++..|....+....
T Consensus 1057 a----~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~ 1127 (1236)
T KOG1839|consen 1057 A----LSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETALSYHALARLFESMKDFRNALEHEKVTYG 1127 (1236)
T ss_pred h----hhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHH
Confidence 2 2335788888888999999999999998652212223335667788888888888888888777665543
No 337
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=89.20 E-value=5.7 Score=41.93 Aligned_cols=91 Identities=13% Similarity=0.084 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHH
Q 008887 421 EAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASA 500 (550)
Q Consensus 421 eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~ 500 (550)
.-...|+.|+.. .+.+. . .|.....-..+.+.+.+--..|.+++... |+++ +.|..-|.-
T Consensus 89 rIv~lyr~at~r-----f~~D~-~------lW~~yi~f~kk~~~~~~v~ki~~~~l~~H-p~~~-------dLWI~aA~w 148 (568)
T KOG2396|consen 89 RIVFLYRRATNR-----FNGDV-K------LWLSYIAFCKKKKTYGEVKKIFAAMLAKH-PNNP-------DLWIYAAKW 148 (568)
T ss_pred HHHHHHHHHHHh-----cCCCH-H------HHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCc-------hhHHhhhhh
Confidence 345667888877 55444 1 44445554556666999999999999998 9999 999888877
Q ss_pred HHhcCC-HHHHHHHHHHHHHcCCCcHHHHHHH
Q 008887 501 LCNVGR-NAEAEKYLRLAAAHNPQYNELLEQL 531 (550)
Q Consensus 501 ~~~~g~-~~eA~~~l~~al~~~p~~~~~~~~l 531 (550)
.+..+. .+.|++.+.++++.+|+.+..+...
T Consensus 149 efe~n~ni~saRalflrgLR~npdsp~Lw~ey 180 (568)
T KOG2396|consen 149 EFEINLNIESARALFLRGLRFNPDSPKLWKEY 180 (568)
T ss_pred HHhhccchHHHHHHHHHHhhcCCCChHHHHHH
Confidence 665555 8999999999999999999877654
No 338
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=89.16 E-value=4.5 Score=33.90 Aligned_cols=96 Identities=20% Similarity=0.221 Sum_probs=66.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHHh-----------cCHHHHHHHHHHHhc
Q 008887 409 MGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQ-----------EKWEEGIAHLERIGN 477 (550)
Q Consensus 409 lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~-----------g~~~eA~~~~~~al~ 477 (550)
++.-++..|++-+|++..++.+.. +.++.... ..+..-|.++.++ .-.-.+++.|.++..
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~-----h~~~~~~~----~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~ 72 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISR-----HGEDESSW----LLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVE 72 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHH-----ccCCCchH----HHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhc
Confidence 467788999999999999999998 44433111 1233344444322 233467888888888
Q ss_pred CCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 008887 478 LKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHN 521 (550)
Q Consensus 478 ~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~ 521 (550)
+. |... ..++.+|.-+.....|+++..-.+++|.+.
T Consensus 73 Ls-p~~A-------~~L~~la~~l~s~~~Ykk~v~kak~~Lsv~ 108 (111)
T PF04781_consen 73 LS-PDSA-------HSLFELASQLGSVKYYKKAVKKAKRGLSVT 108 (111)
T ss_pred cC-hhHH-------HHHHHHHHHhhhHHHHHHHHHHHHHHhccc
Confidence 86 7554 777788877666667888888888877653
No 339
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=89.07 E-value=17 Score=38.59 Aligned_cols=85 Identities=18% Similarity=0.162 Sum_probs=68.0
Q ss_pred hHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHHhcC-HH
Q 008887 388 PIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEK-WE 466 (550)
Q Consensus 388 A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~g~-~~ 466 (550)
=..+|++|+...++++..|........+.+.+.+-...|.+++.. +|+++ . .|...|.-.+.-+. .+
T Consensus 90 Iv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~-----Hp~~~-d------LWI~aA~wefe~n~ni~ 157 (568)
T KOG2396|consen 90 IVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAK-----HPNNP-D------LWIYAAKWEFEINLNIE 157 (568)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHh-----CCCCc-h------hHHhhhhhHHhhccchH
Confidence 346788888888999999998888777778799999999999999 88887 3 45555555555444 89
Q ss_pred HHHHHHHHHhcCCCCCCcc
Q 008887 467 EGIAHLERIGNLKEPEEPK 485 (550)
Q Consensus 467 eA~~~~~~al~~~~p~~~~ 485 (550)
.|...|.++++.+ |+++.
T Consensus 158 saRalflrgLR~n-pdsp~ 175 (568)
T KOG2396|consen 158 SARALFLRGLRFN-PDSPK 175 (568)
T ss_pred HHHHHHHHHhhcC-CCChH
Confidence 9999999999998 88883
No 340
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=89.03 E-value=7.3 Score=38.49 Aligned_cols=130 Identities=15% Similarity=0.051 Sum_probs=79.1
Q ss_pred ChHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCC-hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHH
Q 008887 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDN-INALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAID 446 (550)
Q Consensus 368 ~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~-~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~ 446 (550)
+.+....++.++...|+.+.|...+...=....+. .......-..+.+.....+..+ +++.+.. +|++. .
T Consensus 167 ~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~~~-l~~~~aa-----dPdd~-~-- 237 (304)
T COG3118 167 NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEIQD-LQRRLAA-----DPDDV-E-- 237 (304)
T ss_pred cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCHHH-HHHHHHh-----CCCCH-H--
Confidence 45667799999999999999888877642222111 1111112233334333333332 3344444 77776 2
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHH
Q 008887 447 LLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRL 516 (550)
Q Consensus 447 ~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~ 516 (550)
+.+.+|..+...|++++|.+.+-..++.+ .... ...+...+-.++...|..+.+...|++
T Consensus 238 ----aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d-~~~~-----d~~~Rk~lle~f~~~g~~Dp~~~~~RR 297 (304)
T COG3118 238 ----AALALADQLHLVGRNEAALEHLLALLRRD-RGFE-----DGEARKTLLELFEAFGPADPLVLAYRR 297 (304)
T ss_pred ----HHHHHHHHHHHcCCHHHHHHHHHHHHHhc-cccc-----CcHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 67789999999999999999998888775 2211 114556666666666644444444443
No 341
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=88.82 E-value=13 Score=38.97 Aligned_cols=135 Identities=9% Similarity=-0.018 Sum_probs=84.6
Q ss_pred HHHHHHHHHHcCCCCChHHHHHHHHhhCCCChH-----HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHH
Q 008887 372 LIALSVKFLSKGDKERPIPLLQLALNKEPDNIN-----ALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAID 446 (550)
Q Consensus 372 l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~-----a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~ 446 (550)
++-.|..+..++++.+|++.|.+..+.-.+.+. .+.++-.-.+-.++.+.=...+-..-+. .|..+ +
T Consensus 9 lc~Qgf~Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~nld~Me~~l~~l~~~-----~~~s~-~-- 80 (549)
T PF07079_consen 9 LCFQGFILQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLNNLDLMEKQLMELRQQ-----FGKSA-Y-- 80 (549)
T ss_pred HHHhhHHHHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHh-----cCCch-H--
Confidence 347888999999999999999999886655432 2222222223344444433333333223 44333 2
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCcccccc--------chhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008887 447 LLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAH--------YYDGLVVLASALCNVGRNAEAEKYLRLAA 518 (550)
Q Consensus 447 ~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~--------~~~~~~~La~~~~~~g~~~eA~~~l~~al 518 (550)
.....|...+++|+|++|++.+..--+.. .+......+ .+-.-...|.|+.+.|++.|++..+++..
T Consensus 81 ----l~LF~~L~~Y~~k~~~kal~~ls~w~~~~-~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~ 155 (549)
T PF07079_consen 81 ----LPLFKALVAYKQKEYRKALQALSVWKEQI-KGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRII 155 (549)
T ss_pred ----HHHHHHHHHHHhhhHHHHHHHHHHHHhhh-cccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHH
Confidence 34457888999999999999987654442 111100000 12223456889999999999999998876
Q ss_pred H
Q 008887 519 A 519 (550)
Q Consensus 519 ~ 519 (550)
.
T Consensus 156 ~ 156 (549)
T PF07079_consen 156 E 156 (549)
T ss_pred H
Confidence 5
No 342
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=88.81 E-value=7.7 Score=41.76 Aligned_cols=103 Identities=23% Similarity=0.175 Sum_probs=83.0
Q ss_pred HHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHH-HHHHhhhcCCCCChhhHHHHHHHHH
Q 008887 375 LSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLEC-AISKLFLAGHPTEPEAIDLLIVASQ 453 (550)
Q Consensus 375 la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~-al~l~~~~~~p~~~~~~~~l~~a~~ 453 (550)
+.......++...+.-.+..++..+|+++.+..++|......|....+...+.+ +... .|.+.+....+...+.
T Consensus 73 lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~-----~~~~~~~~~~~~~~~~ 147 (620)
T COG3914 73 LSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIAEWL-----SPDNAEFLGHLIRFYQ 147 (620)
T ss_pred HHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-----CcchHHHHhhHHHHHH
Confidence 455666677777888899999999999999999999999988888877777666 6666 6777655555553344
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHhcCCCCCCc
Q 008887 454 WSGVACIRQEKWEEGIAHLERIGNLKEPEEP 484 (550)
Q Consensus 454 ~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~ 484 (550)
+|......|+.+++....+++.+.. |..+
T Consensus 148 -~~~~~~~l~~~~~~~~~l~~~~d~~-p~~~ 176 (620)
T COG3914 148 -LGRYLKLLGRTAEAELALERAVDLL-PKYP 176 (620)
T ss_pred -HHHHHHHhccHHHHHHHHHHHHHhh-hhhh
Confidence 8999999999999999999999997 8765
No 343
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.71 E-value=15 Score=40.08 Aligned_cols=74 Identities=11% Similarity=-0.086 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHH
Q 008887 451 ASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNE 526 (550)
Q Consensus 451 a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~ 526 (550)
...+-|.-.++..+|..+++.|+..+... +.|..+... +....+++.||..+.+.|+|.++++++-+.+|.+.-
T Consensus 356 iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i-~~D~~~~~F-aK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l 429 (872)
T KOG4814|consen 356 LLWNTAKKLFKMEKYVVSIRFYKLSLKDI-ISDNYSDRF-AKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPL 429 (872)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHhc-cchhhhhHH-HHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHH
Confidence 34466777889999999999999999987 777655554 688889999999999999999999999999988764
No 344
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=88.50 E-value=13 Score=37.69 Aligned_cols=112 Identities=13% Similarity=-0.015 Sum_probs=76.5
Q ss_pred HHHHHHHHhhCCCChHHHHHHHHHHHHcCC------------HHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHH
Q 008887 389 IPLLQLALNKEPDNINALILMGQTQLQKGL------------LEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSG 456 (550)
Q Consensus 389 ~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~------------~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg 456 (550)
...|++.++.+|++..+|..+.......-. .+..+..|++|++. +|.+. . .+..+-
T Consensus 5 ~~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~-----np~~~-~------L~l~~l 72 (321)
T PF08424_consen 5 TAELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKH-----NPDSE-R------LLLGYL 72 (321)
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHh-----CCCCH-H------HHHHHH
Confidence 356888899999999999988876655433 34667789999999 77555 2 222334
Q ss_pred HHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHH---HhcCCHHHHHHHHHHHHHc
Q 008887 457 VACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASAL---CNVGRNAEAEKYLRLAAAH 520 (550)
Q Consensus 457 ~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~---~~~g~~~eA~~~l~~al~~ 520 (550)
.+..+..+.++..+.+++++..+ |.+. ..|..+-... ...-.+++....|.++++.
T Consensus 73 ~~~~~~~~~~~l~~~we~~l~~~-~~~~-------~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~ 131 (321)
T PF08424_consen 73 EEGEKVWDSEKLAKKWEELLFKN-PGSP-------ELWREYLDFRQSNFASFTVSDVRDVYEKCLRA 131 (321)
T ss_pred HHHHHhCCHHHHHHHHHHHHHHC-CCCh-------HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHH
Confidence 44556678888899999999997 7766 4554433322 2233567777777776653
No 345
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=88.12 E-value=5.1 Score=39.94 Aligned_cols=107 Identities=18% Similarity=0.076 Sum_probs=69.4
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCC
Q 008887 402 NINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEP 481 (550)
Q Consensus 402 ~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p 481 (550)
-.+++..+|..|++.||-+.|++.+++..+.....|. ..|.+. ....+|..|....-..+.++-....++..
T Consensus 103 v~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~-----kiDVvf-~~iRlglfy~D~~lV~~~iekak~liE~G-- 174 (393)
T KOG0687|consen 103 VREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGH-----KIDVVF-YKIRLGLFYLDHDLVTESIEKAKSLIEEG-- 174 (393)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhccc-----chhhHH-HHHHHHHhhccHHHHHHHHHHHHHHHHhC--
Confidence 3688999999999999999999999888777322222 222222 45567777766555555555555555443
Q ss_pred CCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008887 482 EEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAA 519 (550)
Q Consensus 482 ~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~ 519 (550)
.++.+....-...|.-.....++.+|...|-..+.
T Consensus 175 ---gDWeRrNRlKvY~Gly~msvR~Fk~Aa~Lfld~vs 209 (393)
T KOG0687|consen 175 ---GDWERRNRLKVYQGLYCMSVRNFKEAADLFLDSVS 209 (393)
T ss_pred ---CChhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHcc
Confidence 22233334444555566667789999988877654
No 346
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=88.08 E-value=2.4 Score=46.20 Aligned_cols=81 Identities=23% Similarity=0.169 Sum_probs=44.8
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCC
Q 008887 403 INALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPE 482 (550)
Q Consensus 403 ~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~ 482 (550)
-.++.++|..+.....|++|.++|.+.-.. . ++..|++...++++-..+.+. + |+
T Consensus 796 e~A~r~ig~~fa~~~~We~A~~yY~~~~~~-----------e---------~~~ecly~le~f~~LE~la~~---L--pe 850 (1189)
T KOG2041|consen 796 EDAFRNIGETFAEMMEWEEAAKYYSYCGDT-----------E---------NQIECLYRLELFGELEVLART---L--PE 850 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccch-----------H---------hHHHHHHHHHhhhhHHHHHHh---c--Cc
Confidence 356677777777777777777777666333 1 244555555555443333322 1 43
Q ss_pred CccccccchhHHHHHHHHHHhcCCHHHHHHHHH
Q 008887 483 EPKSKAHYYDGLVVLASALCNVGRNAEAEKYLR 515 (550)
Q Consensus 483 ~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~ 515 (550)
+. ..+-.+|..+...|.-++|.++|-
T Consensus 851 ~s-------~llp~~a~mf~svGMC~qAV~a~L 876 (1189)
T KOG2041|consen 851 DS-------ELLPVMADMFTSVGMCDQAVEAYL 876 (1189)
T ss_pred cc-------chHHHHHHHHHhhchHHHHHHHHH
Confidence 33 445555555555565555555443
No 347
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=87.76 E-value=2.3 Score=45.02 Aligned_cols=97 Identities=18% Similarity=0.097 Sum_probs=69.4
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHHh---cCHHHHHHHHHHHhcCCCCCCccc
Q 008887 410 GQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQ---EKWEEGIAHLERIGNLKEPEEPKS 486 (550)
Q Consensus 410 g~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~---g~~~eA~~~~~~al~~~~p~~~~~ 486 (550)
|.-.+..+.+..|+..|.+++.. .|... ..+.+.+.++++. |+.-.|+..+-++++++ |...
T Consensus 381 gnd~ly~~~~~~~i~~~s~a~q~-----~~~~~-------~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln-~s~~-- 445 (758)
T KOG1310|consen 381 GNDGLYESIVSGAISHYSRAIQY-----VPDAI-------YLLENRAAALMKRKWRGDSYLALRDCHVALRLN-PSIQ-- 445 (758)
T ss_pred ccchhhhHHHHHHHHHHHHHhhh-----ccchh-------HHHHhHHHHHHhhhccccHHHHHHhHHhhccCC-hHHH--
Confidence 33334445677788888888877 33332 1344566666654 45556777777888887 7555
Q ss_pred cccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHH
Q 008887 487 KAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNE 526 (550)
Q Consensus 487 ~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~ 526 (550)
.+++.|++++.+++++.+|.+....+....|.+..
T Consensus 446 -----kah~~la~aL~el~r~~eal~~~~alq~~~Ptd~a 480 (758)
T KOG1310|consen 446 -----KAHFRLARALNELTRYLEALSCHWALQMSFPTDVA 480 (758)
T ss_pred -----HHHHHHHHHHHHHhhHHHhhhhHHHHhhcCchhhh
Confidence 89999999999999999999998877777774443
No 348
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=87.71 E-value=1.6 Score=28.93 Aligned_cols=30 Identities=27% Similarity=0.357 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Q 008887 404 NALILMGQTQLQKGLLEEAVEYLECAISKL 433 (550)
Q Consensus 404 ~a~~~lg~~~~~~g~~~eA~~~~~~al~l~ 433 (550)
+++..||.+.+..++|++|++.|++++++.
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~ 31 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEIQ 31 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 567889999999999999999999999884
No 349
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=87.52 E-value=4.2 Score=39.64 Aligned_cols=84 Identities=19% Similarity=0.041 Sum_probs=61.8
Q ss_pred ChHHHHHHHHhhCCC------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHH
Q 008887 387 RPIPLLQLALNKEPD------NINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACI 460 (550)
Q Consensus 387 ~A~~~~~~aL~~~p~------~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~ 460 (550)
..++++++|++.... .......+|..|+..|+|++|+++|+.+... ...+. +...+......+..|+.
T Consensus 156 ~iI~lL~~A~~~f~~~~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~-----yr~eg-W~~l~~~~l~~l~~Ca~ 229 (247)
T PF11817_consen 156 LIIELLEKAYEQFKKYGQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASS-----YRREG-WWSLLTEVLWRLLECAK 229 (247)
T ss_pred HHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-----HHhCC-cHHHHHHHHHHHHHHHH
Confidence 346667776663321 2344568999999999999999999999766 23333 55556567778899999
Q ss_pred HhcCHHHHHHHHHHHh
Q 008887 461 RQEKWEEGIAHLERIG 476 (550)
Q Consensus 461 ~~g~~~eA~~~~~~al 476 (550)
..|+.++.+...-+.+
T Consensus 230 ~~~~~~~~l~~~leLl 245 (247)
T PF11817_consen 230 RLGDVEDYLTTSLELL 245 (247)
T ss_pred HhCCHHHHHHHHHHHh
Confidence 9999999888876654
No 350
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=86.89 E-value=2.2 Score=46.70 Aligned_cols=122 Identities=17% Similarity=0.053 Sum_probs=75.3
Q ss_pred HHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHH
Q 008887 374 ALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQ 453 (550)
Q Consensus 374 ~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~ 453 (550)
+.|.-|...|+|+.|+++|-++= ....--..|-+.|+|++|.+.-+++... ... . ..|.
T Consensus 770 ~iadhyan~~dfe~ae~lf~e~~--------~~~dai~my~k~~kw~da~kla~e~~~~-------e~t-~-----~~yi 828 (1636)
T KOG3616|consen 770 EIADHYANKGDFEIAEELFTEAD--------LFKDAIDMYGKAGKWEDAFKLAEECHGP-------EAT-I-----SLYI 828 (1636)
T ss_pred HHHHHhccchhHHHHHHHHHhcc--------hhHHHHHHHhccccHHHHHHHHHHhcCc-------hhH-H-----HHHH
Confidence 67888888999999999987752 2233345667889999888877666322 111 1 1333
Q ss_pred HHHHHHHHhcCHHHHHHHH-------------HHHhcCCCCCC-----ccccccchhHHHHHHHHHHhcCCHHHHHHHHH
Q 008887 454 WSGVACIRQEKWEEGIAHL-------------ERIGNLKEPEE-----PKSKAHYYDGLVVLASALCNVGRNAEAEKYLR 515 (550)
Q Consensus 454 ~lg~~~~~~g~~~eA~~~~-------------~~al~~~~p~~-----~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~ 515 (550)
.-+.-+.++|++.+|.++| ++.-..+ +- .....+..+.+..+|.-|...|+..+|...|-
T Consensus 829 akaedldehgkf~eaeqlyiti~~p~~aiqmydk~~~~d--dmirlv~k~h~d~l~dt~~~f~~e~e~~g~lkaae~~fl 906 (1636)
T KOG3616|consen 829 AKAEDLDEHGKFAEAEQLYITIGEPDKAIQMYDKHGLDD--DMIRLVEKHHGDHLHDTHKHFAKELEAEGDLKAAEEHFL 906 (1636)
T ss_pred HhHHhHHhhcchhhhhheeEEccCchHHHHHHHhhCcch--HHHHHHHHhChhhhhHHHHHHHHHHHhccChhHHHHHHH
Confidence 4455555666666555443 3311100 00 00112345778889999999999999998877
Q ss_pred HHH
Q 008887 516 LAA 518 (550)
Q Consensus 516 ~al 518 (550)
++-
T Consensus 907 ea~ 909 (1636)
T KOG3616|consen 907 EAG 909 (1636)
T ss_pred hhh
Confidence 653
No 351
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.57 E-value=17 Score=39.10 Aligned_cols=136 Identities=21% Similarity=0.215 Sum_probs=93.0
Q ss_pred ChHHHHHHHHHHHHcCCCCChHHHHHHHHhh---------------------CCCChHH---HHHHHHHHHHcCCHHHHH
Q 008887 368 TPKELIALSVKFLSKGDKERPIPLLQLALNK---------------------EPDNINA---LILMGQTQLQKGLLEEAV 423 (550)
Q Consensus 368 ~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~---------------------~p~~~~a---~~~lg~~~~~~g~~~eA~ 423 (550)
..+.+..+|..+..+||.+.|..+.+++|=. +|.|-.. .+..-.-+.+.|-|.-|.
T Consensus 283 HvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~ 362 (665)
T KOG2422|consen 283 HVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRLPYIYPENRQFYLALFRYMQSLAQRGCWRTAL 362 (665)
T ss_pred chhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccCcccchhhHHHHHHHHHHHHHHHhcCChHHHH
Confidence 4567789999999999999999998888751 1333322 233445567889999999
Q ss_pred HHHHHHHHHhhhcCCCC-ChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHh-----cCCCCCCccccccchhHHHHH
Q 008887 424 EYLECAISKLFLAGHPT-EPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIG-----NLKEPEEPKSKAHYYDGLVVL 497 (550)
Q Consensus 424 ~~~~~al~l~~~~~~p~-~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al-----~~~~p~~~~~~~~~~~~~~~L 497 (550)
++.+-.+.+ +|. +|.. ..+.+-....+..+|+--++.++..- ..- |+.. .-..+
T Consensus 363 E~cKlllsL-----dp~eDPl~------~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~~-PN~~--------yS~Al 422 (665)
T KOG2422|consen 363 EWCKLLLSL-----DPSEDPLG------ILYLIDIYALRAREYQWIIELSNEPENMNKLSQL-PNFG--------YSLAL 422 (665)
T ss_pred HHHHHHhhc-----CCcCCchh------HHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhhc-CCch--------HHHHH
Confidence 999999999 887 6633 33334445556677777777666542 222 3222 34466
Q ss_pred HHHHHhcCC---HHHHHHHHHHHHHcCCC
Q 008887 498 ASALCNVGR---NAEAEKYLRLAAAHNPQ 523 (550)
Q Consensus 498 a~~~~~~g~---~~eA~~~l~~al~~~p~ 523 (550)
|..|..... ...|...+.+|+.+.|.
T Consensus 423 A~f~l~~~~~~~rqsa~~~l~qAl~~~P~ 451 (665)
T KOG2422|consen 423 ARFFLRKNEEDDRQSALNALLQALKHHPL 451 (665)
T ss_pred HHHHHhcCChhhHHHHHHHHHHHHHhCcH
Confidence 666665555 67888999999998874
No 352
>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=86.51 E-value=8.6 Score=38.29 Aligned_cols=111 Identities=12% Similarity=0.035 Sum_probs=72.1
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCC
Q 008887 403 INALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPE 482 (550)
Q Consensus 403 ~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~ 482 (550)
..+...+|.+|.+.++|+.|.+.+ .++.+. . .+... ..+.....+..+|..|.+.++..+|..+..++--.. .+
T Consensus 103 ~~irl~LAsiYE~Eq~~~~aaq~L-~~I~~~--t-g~~~~-d~~~kl~l~iriarlyLe~~d~veae~~inRaSil~-a~ 176 (399)
T KOG1497|consen 103 ASIRLHLASIYEKEQNWRDAAQVL-VGIPLD--T-GQKAY-DVEQKLLLCIRIARLYLEDDDKVEAEAYINRASILQ-AE 176 (399)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHH-hccCcc--c-chhhh-hhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhh-hc
Confidence 456788999999999999998876 333330 1 11111 223333467889999999999999999988754332 11
Q ss_pred CccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 008887 483 EPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAH 520 (550)
Q Consensus 483 ~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~ 520 (550)
. .+..-........|+++...+++-||.+.|.+....
T Consensus 177 ~-~Ne~Lqie~kvc~ARvlD~krkFlEAAqrYyels~~ 213 (399)
T KOG1497|consen 177 S-SNEQLQIEYKVCYARVLDYKRKFLEAAQRYYELSQR 213 (399)
T ss_pred c-cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 111222344456677777888888888777766553
No 353
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=86.49 E-value=3.9 Score=40.40 Aligned_cols=61 Identities=26% Similarity=0.220 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008887 451 ASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAA 519 (550)
Q Consensus 451 a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~ 519 (550)
++..++..+...|+++.+++.+++.++.+ |-+. ..|..+-..|.+.|+...|+..|++.-+
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E-------~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELD-PYDE-------PAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccch-------HHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 66678999999999999999999999998 8777 8999999999999999999999998766
No 354
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=86.16 E-value=3.8 Score=43.53 Aligned_cols=108 Identities=18% Similarity=0.111 Sum_probs=64.1
Q ss_pred ChHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHH
Q 008887 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDL 447 (550)
Q Consensus 368 ~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~ 447 (550)
+++.-+++| .+.|+++.|.+.. ..-++...|..||...+.+|+++-|+++|+++-.. .
T Consensus 320 D~~~rFeLA---l~lg~L~~A~~~a-----~~~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d~-----------~--- 377 (443)
T PF04053_consen 320 DPDHRFELA---LQLGNLDIALEIA-----KELDDPEKWKQLGDEALRQGNIELAEECYQKAKDF-----------S--- 377 (443)
T ss_dssp -HHHHHHHH---HHCT-HHHHHHHC-----CCCSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT-H-----------H---
T ss_pred ChHHHhHHH---HhcCCHHHHHHHH-----HhcCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcCc-----------c---
Confidence 445445554 5566666555543 23457788999999999999999999999887444 1
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHH
Q 008887 448 LIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRL 516 (550)
Q Consensus 448 l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~ 516 (550)
.+...|.-.|+.++=.+..+.+.... . +...-.++...|+.++..+.+.+
T Consensus 378 ------~L~lLy~~~g~~~~L~kl~~~a~~~~-~------------~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 378 ------GLLLLYSSTGDREKLSKLAKIAEERG-D------------INIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp ------HHHHHHHHCT-HHHHHHHHHHHHHTT--------------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred ------ccHHHHHHhCCHHHHHHHHHHHHHcc-C------------HHHHHHHHHHcCCHHHHHHHHHH
Confidence 25666777777655555555555443 1 22223455556666666655543
No 355
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=86.08 E-value=4.7 Score=39.29 Aligned_cols=66 Identities=12% Similarity=-0.045 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008887 451 ASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAA 518 (550)
Q Consensus 451 a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al 518 (550)
....+|.-|+..|++++|+++|+.+.... .++. -..-.......+..|+.+.|+.++.+...-+.+
T Consensus 180 l~~~~A~ey~~~g~~~~A~~~l~~~~~~y-r~eg-W~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLl 245 (247)
T PF11817_consen 180 LSLEMAEEYFRLGDYDKALKLLEPAASSY-RREG-WWSLLTEVLWRLLECAKRLGDVEDYLTTSLELL 245 (247)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHH-HhCC-cHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 44569999999999999999999996654 2222 111234677788999999999999888765554
No 356
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=86.05 E-value=7.3 Score=45.19 Aligned_cols=137 Identities=17% Similarity=0.120 Sum_probs=92.9
Q ss_pred HHHHHHHHcCCCCChHHHHHHHHhhCCCC---hHHHHHHHHHHHHcC-------CHHHHHHHHHHHHHHhhhcCCCCChh
Q 008887 374 ALSVKFLSKGDKERPIPLLQLALNKEPDN---INALILMGQTQLQKG-------LLEEAVEYLECAISKLFLAGHPTEPE 443 (550)
Q Consensus 374 ~la~~~~~~g~~~~A~~~~~~aL~~~p~~---~~a~~~lg~~~~~~g-------~~~eA~~~~~~al~l~~~~~~p~~~~ 443 (550)
..-.+++..+.|++|+..|++.-...|+- .++.+..|.+...+- .+++|+..|++... .|..|-
T Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~ 553 (932)
T PRK13184 480 AVPDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHG------GVGAPL 553 (932)
T ss_pred cCcHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcC------CCCCch
Confidence 44457888899999999999998888764 567788888877542 35556665555422 344441
Q ss_pred hHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 008887 444 AIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQ 523 (550)
Q Consensus 444 ~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~ 523 (550)
-|..-|.+|.++|+|+|-++++.-+++.. |..+.-..-.-...+.+-++... +...|....--++...|.
T Consensus 554 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 623 (932)
T PRK13184 554 -------EYLGKALVYQRLGEYNEEIKSLLLALKRY-SQHPEISRLRDHLVYRLHESLYK--HRREALVFMLLALWIAPE 623 (932)
T ss_pred -------HHHhHHHHHHHhhhHHHHHHHHHHHHHhc-CCCCccHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhCcc
Confidence 23356778999999999999999999998 77763222222334444444443 345666777777777777
Q ss_pred cHH
Q 008887 524 YNE 526 (550)
Q Consensus 524 ~~~ 526 (550)
...
T Consensus 624 ~~~ 626 (932)
T PRK13184 624 KIS 626 (932)
T ss_pred ccc
Confidence 554
No 357
>PF11421 Synthase_beta: ATP synthase F1 beta subunit; InterPro: IPR020971 F-type ATPases have 2 components, CF1 - the catalytic core - and CF0 - the membrane proton channel. CF1 has five subunits: alpha3, beta3, gamma1, delta1, epsilon1. CF0 has three main subunits: a, b and c. This entry represents the beta subunit of the F1 component. The NMR solution structure of the protein in SDS micelles was found to contain two helices, an N-terminal amphipathic alpha-helix and a C-terminal alpha-helix separated by a large unstructured internal domain. The N-terminal alpha-helix is the Tom20 receptor binding site whereas the C-terminal alpha-helix is located upstream of the mitochondrial processing peptidase cleavage site [].; GO: 0005524 ATP binding, 0016887 ATPase activity, 0006200 ATP catabolic process, 0006754 ATP biosynthetic process, 0000275 mitochondrial proton-transporting ATP synthase complex, catalytic core F(1); PDB: 1PYV_A.
Probab=85.54 E-value=0.62 Score=31.98 Aligned_cols=15 Identities=47% Similarity=0.518 Sum_probs=10.5
Q ss_pred CchHHHHHHHhhhcc
Q 008887 1 MATAKLLLLQLRRCS 15 (550)
Q Consensus 1 ~~~~~~~~~~~~~~~ 15 (550)
||+||+|=++||-+.
T Consensus 1 MASRR~lSSlLRSss 15 (49)
T PF11421_consen 1 MASRRLLSSLLRSSS 15 (49)
T ss_dssp ---SHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHh
Confidence 999999999999854
No 358
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=85.33 E-value=1.8 Score=29.85 Aligned_cols=26 Identities=23% Similarity=0.184 Sum_probs=23.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008887 494 LVVLASALCNVGRNAEAEKYLRLAAA 519 (550)
Q Consensus 494 ~~~La~~~~~~g~~~eA~~~l~~al~ 519 (550)
.+.||.+|.++|+++.|++.+++++.
T Consensus 2 kLdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 2 KLDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred chHHHHHHHHcCChHHHHHHHHHHHH
Confidence 35799999999999999999999995
No 359
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=84.78 E-value=13 Score=38.89 Aligned_cols=131 Identities=16% Similarity=0.042 Sum_probs=74.4
Q ss_pred ChHHHHHHHHhhCCCChHHHHHHHHHH--HHcCCHHHHHHHHHHHHHHhhhcCCCC-ChhhHHHHHHHHHHHHHHHHHhc
Q 008887 387 RPIPLLQLALNKEPDNINALILMGQTQ--LQKGLLEEAVEYLECAISKLFLAGHPT-EPEAIDLLIVASQWSGVACIRQE 463 (550)
Q Consensus 387 ~A~~~~~~aL~~~p~~~~a~~~lg~~~--~~~g~~~eA~~~~~~al~l~~~~~~p~-~~~~~~~l~~a~~~lg~~~~~~g 463 (550)
+..+..+...+.+|+...++..+...+ ....+..+-++..++........++.. .+-....-..+...+.+++.-.|
T Consensus 57 ~~~~e~~~l~~~~~~~W~~~~VLnvL~sLv~kS~I~e~l~~~~~~~~~~~~~~~~g~~~l~~~LGYFSligLlRvh~LLG 136 (404)
T PF10255_consen 57 KTEEEIQLLKENNPDVWNVYSVLNVLYSLVDKSQINEQLEAEKRGEDPDEVAGEYGSSPLYKMLGYFSLIGLLRVHCLLG 136 (404)
T ss_pred CCHHHHHHHHhhccCcccHHHHHHHHHHHHHHHhHHHHHHHhhccCCchhhhcccccccHHHHhhHHHHHHHHHHHHhcc
Confidence 333444444444466555554444333 345556665555544321110011111 11011111114455678889999
Q ss_pred CHHHHHHHHHHHhcCCCCCC--ccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008887 464 KWEEGIAHLERIGNLKEPEE--PKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAA 519 (550)
Q Consensus 464 ~~~eA~~~~~~al~~~~p~~--~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~ 519 (550)
+|..|++.++. ++.+ ... ..........++.+|-+|..++||.+|++.|..++.
T Consensus 137 DY~~Alk~l~~-idl~-~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 137 DYYQALKVLEN-IDLN-KKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred CHHHHHHHhhc-cCcc-cchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999876 4443 221 111223558899999999999999999999998764
No 360
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=83.81 E-value=3.4 Score=40.32 Aligned_cols=64 Identities=20% Similarity=0.246 Sum_probs=59.6
Q ss_pred HHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCCh
Q 008887 374 ALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEP 442 (550)
Q Consensus 374 ~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~ 442 (550)
++=..+...++.+.|....++.+..+|+++.-+-..|.+|.+.|.+.-|++.++..++. .|+++
T Consensus 186 ~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~-----~P~~~ 249 (269)
T COG2912 186 NLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEH-----CPDDP 249 (269)
T ss_pred HHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHh-----CCCch
Confidence 44457889999999999999999999999999999999999999999999999999999 88888
No 361
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=83.41 E-value=27 Score=36.40 Aligned_cols=59 Identities=17% Similarity=0.155 Sum_probs=45.2
Q ss_pred HHHHHHHHcCCCCChHHHHHHHHhhCCCCh--HHHHHHHHHHH--HcCCHHHHHHHHHHHHHH
Q 008887 374 ALSVKFLSKGDKERPIPLLQLALNKEPDNI--NALILMGQTQL--QKGLLEEAVEYLECAISK 432 (550)
Q Consensus 374 ~la~~~~~~g~~~~A~~~~~~aL~~~p~~~--~a~~~lg~~~~--~~g~~~eA~~~~~~al~l 432 (550)
..+..+++.++|..|.+.++.....-|+.. ..+..+...|. ..-++++|.+++++....
T Consensus 136 ~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 136 RRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 788899999999999999999988633333 35555555555 556788999999888765
No 362
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=83.22 E-value=6.1 Score=40.79 Aligned_cols=58 Identities=21% Similarity=0.152 Sum_probs=49.5
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008887 453 QWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAA 518 (550)
Q Consensus 453 ~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al 518 (550)
-.+..||.+.++.+-|+...-+.+.++ |... .-+...|.|...+.+|.+|.+..-.+.
T Consensus 232 tklv~CYL~~rkpdlALnh~hrsI~ln-P~~f-------rnHLrqAavfR~LeRy~eAarSamia~ 289 (569)
T PF15015_consen 232 TKLVTCYLRMRKPDLALNHSHRSINLN-PSYF-------RNHLRQAAVFRRLERYSEAARSAMIAD 289 (569)
T ss_pred HHHHHhhhhcCCCchHHHHHhhhhhcC-cchh-------hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 358899999999999999999999997 8666 778888999999999999987665543
No 363
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=83.20 E-value=3.7 Score=26.87 Aligned_cols=33 Identities=21% Similarity=0.197 Sum_probs=26.1
Q ss_pred hHHHHHHHHHHhcCCHHHHHHH--HHHHHHcCCCc
Q 008887 492 DGLVVLASALCNVGRNAEAEKY--LRLAAAHNPQY 524 (550)
Q Consensus 492 ~~~~~La~~~~~~g~~~eA~~~--l~~al~~~p~~ 524 (550)
+.++.+|-.+.+.|++++|+.. |+-+..+++.+
T Consensus 2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~n 36 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKYN 36 (36)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT-
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccC
Confidence 5678899999999999999999 55777777653
No 364
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=83.12 E-value=5.6 Score=38.86 Aligned_cols=70 Identities=21% Similarity=0.216 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHHH
Q 008887 451 ASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELL 528 (550)
Q Consensus 451 a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~ 528 (550)
...++-..+.+.++++.|..+.++.+..+ |+++ .-+.-.|.+|.++|.+.-|++.+...++..|+...+.
T Consensus 183 ll~~lk~~~~~e~~~~~al~~~~r~l~l~-P~dp-------~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~ 252 (269)
T COG2912 183 LLRNLKAALLRELQWELALRVAERLLDLN-PEDP-------YEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAE 252 (269)
T ss_pred HHHHHHHHHHHhhchHHHHHHHHHHHhhC-CCCh-------hhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHH
Confidence 44467788889999999999999999998 9998 6677889999999999999999999999999987644
No 365
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=82.89 E-value=6.1 Score=42.89 Aligned_cols=113 Identities=19% Similarity=0.172 Sum_probs=69.4
Q ss_pred HHHHHHHHcCCCCChHHHH----------HHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChh
Q 008887 374 ALSVKFLSKGDKERPIPLL----------QLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPE 443 (550)
Q Consensus 374 ~la~~~~~~g~~~~A~~~~----------~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~ 443 (550)
..|..+...|+.++|+... +-+-+++-.+.+.+...+..+.....+.-|.+.|++.-..
T Consensus 708 aAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~----------- 776 (1081)
T KOG1538|consen 708 AAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGDL----------- 776 (1081)
T ss_pred HHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhccH-----------
Confidence 3455567777777766542 2222233344444555555555555555555555444222
Q ss_pred hHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008887 444 AIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLA 517 (550)
Q Consensus 444 ~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~a 517 (550)
. .+-..+.+.+++++|....++.-+.- + ++|+-.|+-+.+.++++||.+.|-++
T Consensus 777 k---------siVqlHve~~~W~eAFalAe~hPe~~-~----------dVy~pyaqwLAE~DrFeEAqkAfhkA 830 (1081)
T KOG1538|consen 777 K---------SLVQLHVETQRWDEAFALAEKHPEFK-D----------DVYMPYAQWLAENDRFEEAQKAFHKA 830 (1081)
T ss_pred H---------HHhhheeecccchHhHhhhhhCcccc-c----------cccchHHHHhhhhhhHHHHHHHHHHh
Confidence 1 24456778899999998888755553 2 56778888888888888888777665
No 366
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=82.69 E-value=4.5 Score=39.95 Aligned_cols=62 Identities=16% Similarity=0.187 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 008887 371 ELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISK 432 (550)
Q Consensus 371 ~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l 432 (550)
.+.+++..+...|+++.+++.+++.+..+|.+-.+|..+=..|+..|+...|+..|++.-..
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 44578889999999999999999999999999999999999999999999999999888765
No 367
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=82.59 E-value=27 Score=34.40 Aligned_cols=128 Identities=10% Similarity=0.024 Sum_probs=83.1
Q ss_pred HHHHHHHHcCCCCChHHHHHHHHhhC--------CC--ChHHHH---HH-HHHHHHcCCHHHHHHHHHHHHHHhhhcCCC
Q 008887 374 ALSVKFLSKGDKERPIPLLQLALNKE--------PD--NINALI---LM-GQTQLQKGLLEEAVEYLECAISKLFLAGHP 439 (550)
Q Consensus 374 ~la~~~~~~g~~~~A~~~~~~aL~~~--------p~--~~~a~~---~l-g~~~~~~g~~~eA~~~~~~al~l~~~~~~p 439 (550)
+.|.......|+..|++.++++++.- +. +.+.-. .+ -+++.+.++|.+.+.+.-+-.+. |
T Consensus 40 ~Aad~LvV~rdF~aal~tCerglqsL~~~a~~ee~~~~~~evK~sLcvvGIQALAEmnrWreVLsWvlqyYq~------p 113 (309)
T PF07163_consen 40 EAADLLVVHRDFQAALETCERGLQSLASDADAEEPAGSSLEVKCSLCVVGIQALAEMNRWREVLSWVLQYYQV------P 113 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhhhhhhhhhhhHHHHHHHhhHHHHHHHHHHHhcC------c
Confidence 56667788889999999999998832 11 112211 12 36677899999988765444332 2
Q ss_pred CChhhHHHHHHHHHHHHH-HHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHH
Q 008887 440 TEPEAIDLLIVASQWSGV-ACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLR 515 (550)
Q Consensus 440 ~~~~~~~~l~~a~~~lg~-~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~ 515 (550)
.+- ...+. .++. .|-+.|+.....+.-..-++. |++.....+..-+-..+-.++.=+|.++||++...
T Consensus 114 Ekl--PpkIl----eLCILLysKv~Ep~amlev~~~WL~~--p~Nq~lp~y~~vaELyLl~VLlPLG~~~eAeelv~ 182 (309)
T PF07163_consen 114 EKL--PPKIL----ELCILLYSKVQEPAAMLEVASAWLQD--PSNQSLPEYGTVAELYLLHVLLPLGHFSEAEELVV 182 (309)
T ss_pred ccC--CHHHH----HHHHHHHHHhcCHHHHHHHHHHHHhC--cccCCchhhHHHHHHHHHHHHhccccHHHHHHHHh
Confidence 221 11122 2554 466888888888888777765 66654444444556666677778999999998873
No 368
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=82.38 E-value=2.5 Score=28.05 Aligned_cols=30 Identities=13% Similarity=-0.069 Sum_probs=27.7
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 008887 492 DGLVVLASALCNVGRNAEAEKYLRLAAAHN 521 (550)
Q Consensus 492 ~~~~~La~~~~~~g~~~eA~~~l~~al~~~ 521 (550)
+++..||.+-...++|++|...|++++++.
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~ 31 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEIQ 31 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 678899999999999999999999999874
No 369
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=81.47 E-value=15 Score=31.32 Aligned_cols=78 Identities=17% Similarity=0.104 Sum_probs=56.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHH---HHHHHHHHHHHhcCHHHHHHHHH----HHhcC
Q 008887 406 LILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIV---ASQWSGVACIRQEKWEEGIAHLE----RIGNL 478 (550)
Q Consensus 406 ~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~---a~~~lg~~~~~~g~~~eA~~~~~----~al~~ 478 (550)
+..+|....+.+++-.++-+|++|+.+..........+..+.+.. ..+++|..+..+|+.+-.++|++ +++.+
T Consensus 4 htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE~VltL 83 (140)
T PF10952_consen 4 HTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASEKVLTL 83 (140)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHHHHHHh
Confidence 567888889999999999999999888544433333333333321 56889999999999999999986 44556
Q ss_pred CCCCCc
Q 008887 479 KEPEEP 484 (550)
Q Consensus 479 ~~p~~~ 484 (550)
- |.++
T Consensus 84 i-PQCp 88 (140)
T PF10952_consen 84 I-PQCP 88 (140)
T ss_pred c-cCCC
Confidence 5 7666
No 370
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=81.24 E-value=3.4 Score=40.62 Aligned_cols=62 Identities=16% Similarity=0.024 Sum_probs=48.9
Q ss_pred hHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHH
Q 008887 388 PIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIR 461 (550)
Q Consensus 388 A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~ 461 (550)
|+.+|.+|....|++...++++|.++...|+.-+|+-+|-+++... .|... +..++...+.+
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~----~Pf~~--------A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVR----IPFPS--------ARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSS----B--HH--------HHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcC----CCcHH--------HHHHHHHHHHH
Confidence 6889999999999999999999999999999999999999998552 33322 55567766665
No 371
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=81.15 E-value=5.8 Score=40.95 Aligned_cols=91 Identities=12% Similarity=0.023 Sum_probs=69.5
Q ss_pred HHHHHHHHcCCCCChHHHHHHHHhhC--------C-----CCh-----HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh
Q 008887 374 ALSVKFLSKGDKERPIPLLQLALNKE--------P-----DNI-----NALILMGQTQLQKGLLEEAVEYLECAISKLFL 435 (550)
Q Consensus 374 ~la~~~~~~g~~~~A~~~~~~aL~~~--------p-----~~~-----~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~ 435 (550)
.-|..++++++|..|..-|..+|++. | ++. ..--.+..+|++.++.+.|+.+..+.+.+
T Consensus 181 ~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~l--- 257 (569)
T PF15015_consen 181 KDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINL--- 257 (569)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhc---
Confidence 56678888888888888888888843 1 121 12346889999999999999999999999
Q ss_pred cCCCCChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHh
Q 008887 436 AGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIG 476 (550)
Q Consensus 436 ~~~p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al 476 (550)
||.+.. -+.+.|.|+..+.+|.+|...+--+.
T Consensus 258 --nP~~fr-------nHLrqAavfR~LeRy~eAarSamia~ 289 (569)
T PF15015_consen 258 --NPSYFR-------NHLRQAAVFRRLERYSEAARSAMIAD 289 (569)
T ss_pred --Ccchhh-------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888872 33456888888889999887665443
No 372
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=80.97 E-value=45 Score=35.87 Aligned_cols=65 Identities=12% Similarity=0.052 Sum_probs=56.7
Q ss_pred CChHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 008887 367 LTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISK 432 (550)
Q Consensus 367 l~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l 432 (550)
.+-+.++.+-..+..+ .+++..+.|++.+...|..+.+|.....-.+..++|+.-...|.+|+..
T Consensus 18 ~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvk 82 (656)
T KOG1914|consen 18 YDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVK 82 (656)
T ss_pred ccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 3555666666666555 8999999999999999999999999999999999999999999999877
No 373
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=80.72 E-value=12 Score=34.95 Aligned_cols=86 Identities=8% Similarity=0.001 Sum_probs=59.3
Q ss_pred HHHHHHcCCCCChHHHHHHHHhhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHH
Q 008887 376 SVKFLSKGDKERPIPLLQLALNKE-PDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQW 454 (550)
Q Consensus 376 a~~~~~~g~~~~A~~~~~~aL~~~-p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~ 454 (550)
...+..+-.-++|...|.++-... -++++..+.+|..|. ..|.++|++.+-+++++. ++++.-..+ ....
T Consensus 113 lYy~Wsr~~d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~----~~~~~~n~e----il~s 183 (203)
T PF11207_consen 113 LYYHWSRFGDQEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELS----NPDDNFNPE----ILKS 183 (203)
T ss_pred HHHHhhccCcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhc----CCCCCCCHH----HHHH
Confidence 334444434456666666654322 367899999998776 789999999999999994 333121332 4446
Q ss_pred HHHHHHHhcCHHHHHH
Q 008887 455 SGVACIRQEKWEEGIA 470 (550)
Q Consensus 455 lg~~~~~~g~~~eA~~ 470 (550)
|+..+.++|++++|--
T Consensus 184 Las~~~~~~~~e~AYi 199 (203)
T PF11207_consen 184 LASIYQKLKNYEQAYI 199 (203)
T ss_pred HHHHHHHhcchhhhhh
Confidence 9999999999998853
No 374
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=80.66 E-value=52 Score=33.25 Aligned_cols=136 Identities=17% Similarity=0.089 Sum_probs=90.2
Q ss_pred HHHcCCCCChHHHHHHHHhhC-CCChHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHH
Q 008887 379 FLSKGDKERPIPLLQLALNKE-PDNINALILMGQTQLQ-----KGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVAS 452 (550)
Q Consensus 379 ~~~~g~~~~A~~~~~~aL~~~-p~~~~a~~~lg~~~~~-----~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~ 452 (550)
....+-.+++..++.+++... |+-....-.++.++.. .-||..-..+|+..... .|+.. .-
T Consensus 266 lW~r~lI~eg~all~rA~~~~~pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~~-----apSPv--------V~ 332 (415)
T COG4941 266 LWDRALIDEGLALLDRALASRRPGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQA-----APSPV--------VT 332 (415)
T ss_pred hhhHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHh-----CCCCe--------Ee
Confidence 345555677888888888754 3333333334433332 34677777777666666 44443 22
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHHHHHHH
Q 008887 453 QWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQLE 532 (550)
Q Consensus 453 ~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~l~ 532 (550)
.|.+.+.....-.+.++...+...+. |.-. .+...+...|..+.++|+.+||...|++++.+.++..+......
T Consensus 333 LNRAVAla~~~Gp~agLa~ve~L~~~--~~L~----gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~aer~~l~~ 406 (415)
T COG4941 333 LNRAVALAMREGPAAGLAMVEALLAR--PRLD----GYHLYHAARADLLARLGRVEEARAAYDRAIALARNAAERAFLRQ 406 (415)
T ss_pred ehHHHHHHHhhhHHhHHHHHHHhhcc--cccc----cccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChHHHHHHHH
Confidence 35677666666677788877766554 3222 34467788999999999999999999999999998887655444
Q ss_pred h
Q 008887 533 N 533 (550)
Q Consensus 533 ~ 533 (550)
+
T Consensus 407 r 407 (415)
T COG4941 407 R 407 (415)
T ss_pred H
Confidence 4
No 375
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=80.41 E-value=44 Score=30.62 Aligned_cols=101 Identities=13% Similarity=0.139 Sum_probs=71.3
Q ss_pred HHHHHHHHHHHcCCCCChHHHHHHHHhhCC--CC--hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHH
Q 008887 371 ELIALSVKFLSKGDKERPIPLLQLALNKEP--DN--INALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAID 446 (550)
Q Consensus 371 ~l~~la~~~~~~g~~~~A~~~~~~aL~~~p--~~--~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~ 446 (550)
+....|......|+...|+..|.++-+..+ .- -.+...-+.++...|.|++-....+..- .+.++...
T Consensus 96 A~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~dV~srvepLa-------~d~n~mR~- 167 (221)
T COG4649 96 ARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYDDVSSRVEPLA-------GDGNPMRH- 167 (221)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHHHHHHHhhhcc-------CCCChhHH-
Confidence 445788889999999999999999876443 22 2345556777888999987666443321 23333221
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCc
Q 008887 447 LLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEP 484 (550)
Q Consensus 447 ~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~ 484 (550)
.+.-.||.+.++.|++.+|..+|+...+- ...+
T Consensus 168 ---sArEALglAa~kagd~a~A~~~F~qia~D--a~ap 200 (221)
T COG4649 168 ---SAREALGLAAYKAGDFAKAKSWFVQIAND--AQAP 200 (221)
T ss_pred ---HHHHHHhHHHHhccchHHHHHHHHHHHcc--ccCc
Confidence 25667999999999999999999987663 4444
No 376
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=79.59 E-value=8.4 Score=37.48 Aligned_cols=128 Identities=17% Similarity=0.186 Sum_probs=75.1
Q ss_pred HcCCCCChHHHHHHHHhhCCCCh----HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhh-HHHHHH---HH
Q 008887 381 SKGDKERPIPLLQLALNKEPDNI----NALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEA-IDLLIV---AS 452 (550)
Q Consensus 381 ~~g~~~~A~~~~~~aL~~~p~~~----~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~-~~~l~~---a~ 452 (550)
...+.++|+.-|++.+++.++.. .++..+-.++++.+++++-.+.|++.+..-+.+...++.+. ...... +.
T Consensus 39 ~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS 118 (440)
T KOG1464|consen 39 KEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTS 118 (440)
T ss_pred cccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhh
Confidence 34477889999999999887643 46778889999999999999888887654222212222211 101100 11
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 008887 453 QWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAH 520 (550)
Q Consensus 453 ~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~ 520 (550)
.+++. -+.-|+-.++.++.| ++..-.+.....||.+|+..|++.+-...+++.-..
T Consensus 119 ~~m~L---LQ~FYeTTL~ALkdA---------KNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~S 174 (440)
T KOG1464|consen 119 KNMDL---LQEFYETTLDALKDA---------KNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQS 174 (440)
T ss_pred hhhHH---HHHHHHHHHHHHHhh---------hcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHH
Confidence 11111 122233333333322 122233456678999999999888877777665443
No 377
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=79.55 E-value=7 Score=25.56 Aligned_cols=29 Identities=21% Similarity=0.282 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHH--HHHHH
Q 008887 404 NALILMGQTQLQKGLLEEAVEYLE--CAISK 432 (550)
Q Consensus 404 ~a~~~lg~~~~~~g~~~eA~~~~~--~al~l 432 (550)
+.++.+|..+..+|++++|++.|+ -+..+
T Consensus 2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~l 32 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCAL 32 (36)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHh
Confidence 456777888888888888888843 55444
No 378
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=79.34 E-value=7.2 Score=42.94 Aligned_cols=78 Identities=23% Similarity=0.125 Sum_probs=54.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCcccc
Q 008887 408 LMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSK 487 (550)
Q Consensus 408 ~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~ 487 (550)
..+.-|...|+|+-|.+.|.++-.. . ..-..|-+.|++++|.++-+++-.. ++
T Consensus 770 ~iadhyan~~dfe~ae~lf~e~~~~-----------~---------dai~my~k~~kw~da~kla~e~~~~---e~---- 822 (1636)
T KOG3616|consen 770 EIADHYANKGDFEIAEELFTEADLF-----------K---------DAIDMYGKAGKWEDAFKLAEECHGP---EA---- 822 (1636)
T ss_pred HHHHHhccchhHHHHHHHHHhcchh-----------H---------HHHHHHhccccHHHHHHHHHHhcCc---hh----
Confidence 5677788888888888888776333 1 1334566788999998888886543 22
Q ss_pred ccchhHHHHHHHHHHhcCCHHHHHHHH
Q 008887 488 AHYYDGLVVLASALCNVGRNAEAEKYL 514 (550)
Q Consensus 488 ~~~~~~~~~La~~~~~~g~~~eA~~~l 514 (550)
....|...+.-+.+.|++.||.+.|
T Consensus 823 --t~~~yiakaedldehgkf~eaeqly 847 (1636)
T KOG3616|consen 823 --TISLYIAKAEDLDEHGKFAEAEQLY 847 (1636)
T ss_pred --HHHHHHHhHHhHHhhcchhhhhhee
Confidence 2245667777788888888877665
No 379
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=78.91 E-value=10 Score=35.80 Aligned_cols=64 Identities=23% Similarity=0.247 Sum_probs=56.2
Q ss_pred HHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHHH
Q 008887 457 VACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELL 528 (550)
Q Consensus 457 ~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~ 528 (550)
..+.+.+...+|+...+.-++.+ |.+. .....+-++|.-.|++++|...++-+-++.|++....
T Consensus 9 seLL~~~sL~dai~~a~~qVkak-Ptda-------~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a 72 (273)
T COG4455 9 SELLDDNSLQDAIGLARDQVKAK-PTDA-------GGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGA 72 (273)
T ss_pred HHHHHhccHHHHHHHHHHHHhcC-Cccc-------cchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHH
Confidence 34667889999999999999987 9888 7788888999999999999999999999999987633
No 380
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=78.78 E-value=44 Score=36.30 Aligned_cols=120 Identities=14% Similarity=-0.015 Sum_probs=94.5
Q ss_pred HHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHH
Q 008887 374 ALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQ 453 (550)
Q Consensus 374 ~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~ 453 (550)
.........|+++...-+|++++--.....+.|...+.-....|+.+-|...+.++.+.. .+..+ . ...
T Consensus 302 ~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~----~k~~~-~------i~L 370 (577)
T KOG1258|consen 302 YYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIH----VKKTP-I------IHL 370 (577)
T ss_pred HHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhc----CCCCc-H------HHH
Confidence 455566778999999999999998888888999999988888899999998888888884 55555 2 222
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHH
Q 008887 454 WSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEK 512 (550)
Q Consensus 454 ~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~ 512 (550)
.-+..-..+|+++.|...+++..+.. |... .+-........+.|+.+.+..
T Consensus 371 ~~a~f~e~~~n~~~A~~~lq~i~~e~-pg~v-------~~~l~~~~~e~r~~~~~~~~~ 421 (577)
T KOG1258|consen 371 LEARFEESNGNFDDAKVILQRIESEY-PGLV-------EVVLRKINWERRKGNLEDANY 421 (577)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHhhC-Cchh-------hhHHHHHhHHHHhcchhhhhH
Confidence 34556667889999999999988876 7665 666666777777888888873
No 381
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=78.07 E-value=74 Score=34.33 Aligned_cols=75 Identities=13% Similarity=0.124 Sum_probs=45.5
Q ss_pred HHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCc-HHHHHHHHhhH
Q 008887 459 CIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAH--NPQY-NELLEQLENND 535 (550)
Q Consensus 459 ~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~--~p~~-~~~~~~l~~~~ 535 (550)
|.-+++.+-|...|+--++.. ++++ ..-.....-+...++-..|+.+|++++.. .++- .+.|..+-. .
T Consensus 411 y~cskD~~~AfrIFeLGLkkf-~d~p-------~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~-y 481 (656)
T KOG1914|consen 411 YYCSKDKETAFRIFELGLKKF-GDSP-------EYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLE-Y 481 (656)
T ss_pred HHhcCChhHHHHHHHHHHHhc-CCCh-------HHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHH-H
Confidence 445677777777777777766 6665 55555556666777777777777777765 2222 234554444 2
Q ss_pred HHHHhhh
Q 008887 536 EEFVSDL 542 (550)
Q Consensus 536 ~~~~~~l 542 (550)
+....|+
T Consensus 482 ES~vGdL 488 (656)
T KOG1914|consen 482 ESNVGDL 488 (656)
T ss_pred HHhcccH
Confidence 3333444
No 382
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=78.05 E-value=24 Score=38.20 Aligned_cols=130 Identities=9% Similarity=-0.016 Sum_probs=99.4
Q ss_pred HHHcCCCCChHHHHHHHHhh--------CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHH
Q 008887 379 FLSKGDKERPIPLLQLALNK--------EPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIV 450 (550)
Q Consensus 379 ~~~~g~~~~A~~~~~~aL~~--------~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~ 450 (550)
+....+..+....++..++. ++.+...|......-...|+++.....|++++.- ...+. +
T Consensus 265 ~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~-----cA~Y~-------e 332 (577)
T KOG1258|consen 265 YQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIP-----CALYD-------E 332 (577)
T ss_pred HHhhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhH-----HhhhH-------H
Confidence 34444445566667776662 2334556777777788999999999999999765 22233 3
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHH
Q 008887 451 ASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNEL 527 (550)
Q Consensus 451 a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~ 527 (550)
.|...+.-....|+.+-|...+.++.+...+..+ ..+..-+..-...|+++.|...+++..+-.|+..++
T Consensus 333 fWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~-------~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~pg~v~~ 402 (577)
T KOG1258|consen 333 FWIKYARWMESSGDVSLANNVLARACKIHVKKTP-------IIHLLEARFEESNGNFDDAKVILQRIESEYPGLVEV 402 (577)
T ss_pred HHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCc-------HHHHHHHHHHHhhccHHHHHHHHHHHHhhCCchhhh
Confidence 7778888888889999999999998888756666 788888888899999999999999999877887763
No 383
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=77.84 E-value=48 Score=38.43 Aligned_cols=60 Identities=23% Similarity=0.200 Sum_probs=46.6
Q ss_pred ChHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 008887 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISK 432 (550)
Q Consensus 368 ~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l 432 (550)
.|+.+..+|.+-+..|...+|++-|-+| +++..+...-.+..+.|.|++-+.++.-|-+.
T Consensus 1103 ~p~vWsqlakAQL~~~~v~dAieSyika-----dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk 1162 (1666)
T KOG0985|consen 1103 EPAVWSQLAKAQLQGGLVKDAIESYIKA-----DDPSNYLEVIDVASRTGKYEDLVKYLLMARKK 1162 (1666)
T ss_pred ChHHHHHHHHHHHhcCchHHHHHHHHhc-----CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 4555567888888888888888888664 67777888888888889999888888777555
No 384
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=77.57 E-value=6.8 Score=38.51 Aligned_cols=62 Identities=18% Similarity=0.097 Sum_probs=51.6
Q ss_pred HHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHHHHHHHhhHHH
Q 008887 468 GIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQLENNDEE 537 (550)
Q Consensus 468 A~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~l~~~~~~ 537 (550)
|..+|.+|+.+. |..+ ..+..+|.++...|+.=+|+-+|-+++...--++.+..++....+.
T Consensus 1 A~~~Y~~A~~l~-P~~G-------~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLL-PSNG-------NPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH--TTBS-------HHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhC-CCCC-------CcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 678999999998 9888 9999999999999999999999999998776668888888776555
No 385
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=77.51 E-value=7.3 Score=41.45 Aligned_cols=54 Identities=15% Similarity=0.145 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 008887 451 ASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAH 520 (550)
Q Consensus 451 a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~ 520 (550)
-|..||.....+|+++-|.++|+++-+ +..|..+|.-.|+.++=.+..+.+...
T Consensus 349 ~W~~Lg~~AL~~g~~~lAe~c~~k~~d----------------~~~L~lLy~~~g~~~~L~kl~~~a~~~ 402 (443)
T PF04053_consen 349 KWKQLGDEALRQGNIELAEECYQKAKD----------------FSGLLLLYSSTGDREKLSKLAKIAEER 402 (443)
T ss_dssp HHHHHHHHHHHTTBHHHHHHHHHHCT-----------------HHHHHHHHHHCT-HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHhhcC----------------ccccHHHHHHhCCHHHHHHHHHHHHHc
Confidence 445566666666666666666666322 224445556666655544444444433
No 386
>PF01956 DUF106: Integral membrane protein DUF106; InterPro: IPR002809 This entry represents a group of eukaryotic and archaeal proteins that have no known function. Members are predicted to be integral membrane proteins.; GO: 0016020 membrane
Probab=77.06 E-value=9.5 Score=34.69 Aligned_cols=94 Identities=13% Similarity=0.014 Sum_probs=44.5
Q ss_pred ChHHHHHHHHHHHHHHHHHhHHH-----HHHHHHHHHHHhCCCCCCCCCCCc--Cc-ccHHHHHHHHHHHhhhcCCCchh
Q 008887 120 FPWWTIIVSSTVALRIALLPLIV-----LQLKKIQRIAELLPRLPPPFPPPL--SG-KRFVDQISLFRREKRAAGCPSLL 191 (550)
Q Consensus 120 lpw~~~I~~~t~~vRl~~lPl~i-----~~~~~~~k~~~l~p~l~~~~~~~~--~~-~~~~~~~~l~kk~~~~~g~~~~~ 191 (550)
+|..++|++++++.=++.-=+.. +..+...++++++-+.+++++... .. +-++++.++.++.... --..++
T Consensus 13 ~P~~i~v~~~~~~~~~~s~l~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~mK 91 (168)
T PF01956_consen 13 LPITIVVFLIAILRGLISELLQKFLIDRKMDKYQKRMKEFQKRYRELRKNGDFKKPKKLEKRQMELMEKQQEM-MMMMMK 91 (168)
T ss_pred cCHHHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 57766777777666655322222 223344445555555555443221 11 1122333333332210 011234
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q 008887 192 WFIASFAIQVPCFLVGVTSIRRM 214 (550)
Q Consensus 192 ~~~l~~l~q~Pifi~~~~~lr~m 214 (550)
.++.-+++++|+|..+++-+...
T Consensus 92 ~~~~~~v~~i~i~~wi~~~f~g~ 114 (168)
T PF01956_consen 92 PMFVTMVPQIPIFYWINYFFSGF 114 (168)
T ss_pred HhHHHHHHHHHHHHHHHHHhhhc
Confidence 44455677888888777766654
No 387
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=76.70 E-value=16 Score=37.77 Aligned_cols=138 Identities=14% Similarity=0.095 Sum_probs=79.6
Q ss_pred HHHHHHHcCCCCChHHHHHHHHhhC----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHH
Q 008887 375 LSVKFLSKGDKERPIPLLQLALNKE----PDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIV 450 (550)
Q Consensus 375 la~~~~~~g~~~~A~~~~~~aL~~~----p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~ 450 (550)
+=..|+..+.|+.|..+..+..--+ .+.++.++.+|.+..-+++|..|.+++-+|++. .|.+. ...+...
T Consensus 215 LLr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rk-----apq~~-alGf~q~ 288 (493)
T KOG2581|consen 215 LLRNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRK-----APQHA-ALGFRQQ 288 (493)
T ss_pred HHHHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHh-----Ccchh-hhhHHHH
Confidence 4456777888999888887764211 133566778999999999999999999999999 66644 3222222
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHH--HhcCCHHHHHHHHHHHHHcCCCcHHHH
Q 008887 451 ASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASAL--CNVGRNAEAEKYLRLAAAHNPQYNELL 528 (550)
Q Consensus 451 a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~--~~~g~~~eA~~~l~~al~~~p~~~~~~ 528 (550)
...++..+-.-+|++-+=....+..++. ....|+.|..+- ....++.+-.+.|..-+..+..+.-..
T Consensus 289 v~k~~ivv~ll~geiPers~F~Qp~~~k-----------sL~~Yf~Lt~AVr~gdlkkF~~~leq~k~~f~~D~ty~Liv 357 (493)
T KOG2581|consen 289 VNKLMIVVELLLGEIPERSVFRQPGMRK-----------SLRPYFKLTQAVRLGDLKKFNETLEQFKDKFQADGTYTLIV 357 (493)
T ss_pred HHHHHHHHHHHcCCCcchhhhcCccHHH-----------HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhCCcchHHH
Confidence 2233333344455554332222221111 123455555442 233345555555666666665554433
Q ss_pred H
Q 008887 529 E 529 (550)
Q Consensus 529 ~ 529 (550)
+
T Consensus 358 R 358 (493)
T KOG2581|consen 358 R 358 (493)
T ss_pred H
Confidence 3
No 388
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=76.39 E-value=35 Score=42.98 Aligned_cols=153 Identities=16% Similarity=0.063 Sum_probs=93.8
Q ss_pred ChHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhc-CCCC--Chhh
Q 008887 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLA-GHPT--EPEA 444 (550)
Q Consensus 368 ~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~-~~p~--~~~~ 444 (550)
..+.+.+.|......|+++.|...+-+|.+.. -++++...|..+-++|+...|+..+++.++..+-. ..|. .|..
T Consensus 1669 ~ge~wLqsAriaR~aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~~ 1746 (2382)
T KOG0890|consen 1669 LGECWLQSARIARLAGHLQRAQNALLNAKESR--LPEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDTPQS 1746 (2382)
T ss_pred hHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCccccchh
Confidence 44566689999999999999999999998776 67889999999999999999999999999885211 1110 0111
Q ss_pred HHHHH--HHHHHHHHHHHHhcCH--HHHHHHHHHHhcCCCCCCccccccchhHHHH-----HHHHHHhcCCHHH---HHH
Q 008887 445 IDLLI--VASQWSGVACIRQEKW--EEGIAHLERIGNLKEPEEPKSKAHYYDGLVV-----LASALCNVGRNAE---AEK 512 (550)
Q Consensus 445 ~~~l~--~a~~~lg~~~~~~g~~--~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~-----La~~~~~~g~~~e---A~~ 512 (550)
..... .+...++.-..+.|+. ++-+++|..+.+.. |...+.+.+.+..+.. .+..+.+.|++.. ++.
T Consensus 1747 ~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail-~ewe~~hy~l~~yy~kll~~~~~~~~E~~g~~~~~l~~~~ 1825 (2382)
T KOG0890|consen 1747 VNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAIL-PEWEDKHYHLGKYYDKLLEDYKSNKMEKSGRVLSLLKAIY 1825 (2382)
T ss_pred hhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHc-ccccCceeeHHHHHHHHhhhhhcccccccccHHHHHHHHH
Confidence 11111 1233344444444543 35567888888887 7555222221111111 1112234555555 555
Q ss_pred HHHHHHHcCCC
Q 008887 513 YLRLAAAHNPQ 523 (550)
Q Consensus 513 ~l~~al~~~p~ 523 (550)
.|.+++..+-+
T Consensus 1826 ~~~~sl~yg~~ 1836 (2382)
T KOG0890|consen 1826 FFGRALYYGNQ 1836 (2382)
T ss_pred HHHHHHHhcch
Confidence 66677665533
No 389
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=74.98 E-value=4.9 Score=35.46 Aligned_cols=53 Identities=23% Similarity=0.245 Sum_probs=43.1
Q ss_pred ChHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHH
Q 008887 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLE 420 (550)
Q Consensus 368 ~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~ 420 (550)
-.+.+.+.|...+..|++.-|.++.+.++..+|++.++...++.++.+.|.-.
T Consensus 69 G~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~~ 121 (141)
T PF14863_consen 69 GADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQS 121 (141)
T ss_dssp CHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhc
Confidence 45677799999999999999999999999999999999999999887766544
No 390
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=74.69 E-value=31 Score=34.05 Aligned_cols=140 Identities=12% Similarity=0.108 Sum_probs=88.5
Q ss_pred HHHHHHHHHcCCCCChHHHHHHHHhhCC--------CChHHHHHHHHHHHHcCCHHHHHHH-------------------
Q 008887 373 IALSVKFLSKGDKERPIPLLQLALNKEP--------DNINALILMGQTQLQKGLLEEAVEY------------------- 425 (550)
Q Consensus 373 ~~la~~~~~~g~~~~A~~~~~~aL~~~p--------~~~~a~~~lg~~~~~~g~~~eA~~~------------------- 425 (550)
.++|......+++++|+..|.+.|.... +.-.+...++.+|...|++..-.+.
T Consensus 7 le~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Ki 86 (421)
T COG5159 7 LELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKI 86 (421)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHH
Confidence 4777888888899999999999987621 1234566788888888886532222
Q ss_pred HHHHHHHhhhcCCCCChhhHHHHH---H-----------------HHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCcc
Q 008887 426 LECAISKLFLAGHPTEPEAIDLLI---V-----------------ASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPK 485 (550)
Q Consensus 426 ~~~al~l~~~~~~p~~~~~~~~l~---~-----------------a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~ 485 (550)
.+..++. .|..+..-+..+ . .-..+...+++.|+|.+|+......+.. -..-.
T Consensus 87 irtLiek-----f~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~E--lKk~D 159 (421)
T COG5159 87 IRTLIEK-----FPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHE--LKKYD 159 (421)
T ss_pred HHHHHHh-----cCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHH--HHhhc
Confidence 2222232 222221111100 0 1123566788999999999887765532 11122
Q ss_pred ccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008887 486 SKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAA 519 (550)
Q Consensus 486 ~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~ 519 (550)
++....+.+..-..+|.+..+..++...+..+-.
T Consensus 160 DK~~Li~vhllESKvyh~irnv~KskaSLTaArt 193 (421)
T COG5159 160 DKINLITVHLLESKVYHEIRNVSKSKASLTAART 193 (421)
T ss_pred CccceeehhhhhHHHHHHHHhhhhhhhHHHHHHH
Confidence 3345668888889999999999998888776543
No 391
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=74.42 E-value=5.8 Score=27.29 Aligned_cols=27 Identities=30% Similarity=0.335 Sum_probs=24.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 008887 406 LILMGQTQLQKGLLEEAVEYLECAISK 432 (550)
Q Consensus 406 ~~~lg~~~~~~g~~~eA~~~~~~al~l 432 (550)
.+.+|.+|...||.+.|.+.+++++..
T Consensus 2 kLdLA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 2 KLDLARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred chHHHHHHHHcCChHHHHHHHHHHHHc
Confidence 367999999999999999999999854
No 392
>PRK11619 lytic murein transglycosylase; Provisional
Probab=73.67 E-value=29 Score=38.86 Aligned_cols=125 Identities=16% Similarity=0.104 Sum_probs=62.2
Q ss_pred HHHHHHHHHcCCCCChHHHHHHHHhhCCCCh----HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHH
Q 008887 373 IALSVKFLSKGDKERPIPLLQLALNKEPDNI----NALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLL 448 (550)
Q Consensus 373 ~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~----~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l 448 (550)
..++...+...+.+.|...+.+......-+. .++..+|.-....+...+|..+++++... .. +. .+
T Consensus 245 ~~~~l~Rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~-----~~-~~----~~ 314 (644)
T PRK11619 245 AAVAFASVARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMR-----SQ-ST----SL 314 (644)
T ss_pred HHHHHHHHHHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccc-----cC-Cc----HH
Confidence 3445555566666677777766544332221 22333443333332245556555554322 10 11 11
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008887 449 IVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAA 518 (550)
Q Consensus 449 ~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al 518 (550)
.+ .........++++.....+...-+.. .. .....|.+|+++.+.|+.++|...|+++.
T Consensus 315 ~e---~r~r~Al~~~dw~~~~~~i~~L~~~~-~~-------~~rw~YW~aRa~~~~g~~~~A~~~~~~~a 373 (644)
T PRK11619 315 LE---RRVRMALGTGDRRGLNTWLARLPMEA-KE-------KDEWRYWQADLLLEQGRKAEAEEILRQLM 373 (644)
T ss_pred HH---HHHHHHHHccCHHHHHHHHHhcCHhh-cc-------CHhhHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 11 22333346667766666665532211 11 22567777777777777777777777753
No 393
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=73.67 E-value=29 Score=37.70 Aligned_cols=57 Identities=23% Similarity=0.199 Sum_probs=41.5
Q ss_pred ChHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 008887 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISK 432 (550)
Q Consensus 368 ~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l 432 (550)
+++.-++++ ++.|+++.|.++..++ ++..-|..||.+.+..+++..|.+++.++...
T Consensus 639 D~d~rFela---l~lgrl~iA~~la~e~-----~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d~ 695 (794)
T KOG0276|consen 639 DPDQRFELA---LKLGRLDIAFDLAVEA-----NSEVKWRQLGDAALSAGELPLASECFLRARDL 695 (794)
T ss_pred Chhhhhhhh---hhcCcHHHHHHHHHhh-----cchHHHHHHHHHHhhcccchhHHHHHHhhcch
Confidence 455555554 5667777777655543 55667888999999999999999998888555
No 394
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=73.45 E-value=45 Score=36.09 Aligned_cols=84 Identities=19% Similarity=0.268 Sum_probs=61.3
Q ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCC-------------ChhhHHHHHHHHHHHHHHHHHhcCH
Q 008887 399 EPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPT-------------EPEAIDLLIVASQWSGVACIRQEKW 465 (550)
Q Consensus 399 ~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~-------------~~~~~~~l~~a~~~lg~~~~~~g~~ 465 (550)
.|.+.+.+..++.+...+||.+-|....++++-....+..|. +++...++ .+.+..-..+.+.|.+
T Consensus 280 sPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL~y~~~eNR~Fy-L~l~r~m~~l~~RGC~ 358 (665)
T KOG2422|consen 280 SPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRLPYIYPENRQFY-LALFRYMQSLAQRGCW 358 (665)
T ss_pred CCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccCcccchhhHHHH-HHHHHHHHHHHhcCCh
Confidence 478899999999999999999998888888875432222221 22222222 2455555667789999
Q ss_pred HHHHHHHHHHhcCCCCC-Cc
Q 008887 466 EEGIAHLERIGNLKEPE-EP 484 (550)
Q Consensus 466 ~eA~~~~~~al~~~~p~-~~ 484 (550)
.-|.+++.-.+.++ |. |+
T Consensus 359 rTA~E~cKlllsLd-p~eDP 377 (665)
T KOG2422|consen 359 RTALEWCKLLLSLD-PSEDP 377 (665)
T ss_pred HHHHHHHHHHhhcC-CcCCc
Confidence 99999999999998 76 77
No 395
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=73.32 E-value=23 Score=35.01 Aligned_cols=56 Identities=21% Similarity=0.125 Sum_probs=47.7
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008887 454 WSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLA 517 (550)
Q Consensus 454 ~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~a 517 (550)
..+..|.+.|.+.+|+++.++++..+ |-+. ..+..+-..+..+||.-+|...|++.
T Consensus 284 kva~~yle~g~~neAi~l~qr~ltld-pL~e-------~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 284 KVARAYLEAGKPNEAIQLHQRALTLD-PLSE-------QDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHHcCChHHHHHHHHHHhhcC-hhhh-------HHHHHHHHHHHHhccchhhhhHHHHH
Confidence 46778889999999999999999998 7666 78888889999999988888777764
No 396
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=73.04 E-value=8.6 Score=35.92 Aligned_cols=56 Identities=27% Similarity=0.195 Sum_probs=45.4
Q ss_pred ChHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCC----ChHHHHHHHHHHHHcCCHHHHHH
Q 008887 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPD----NINALILMGQTQLQKGLLEEAVE 424 (550)
Q Consensus 368 ~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~----~~~a~~~lg~~~~~~g~~~eA~~ 424 (550)
+++-.+.+|..|. ..|.++|+.++.++|+.... +++.+..|+.+|.+.|++++|.-
T Consensus 140 t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AYi 199 (203)
T PF11207_consen 140 TAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAYI 199 (203)
T ss_pred CHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhhh
Confidence 4555566765554 77899999999999996543 58999999999999999998853
No 397
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=72.70 E-value=16 Score=35.56 Aligned_cols=132 Identities=11% Similarity=0.039 Sum_probs=83.7
Q ss_pred CCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHH-HHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHHh
Q 008887 384 DKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLE-EAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQ 462 (550)
Q Consensus 384 ~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~-eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~ 462 (550)
+..+-++++.+.++.+|++...|...-.+....|+.. .=++..++++.. +..+- + +|...-.++..-
T Consensus 93 dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rELef~~~~l~~-----DaKNY-H------aWshRqW~~r~F 160 (318)
T KOG0530|consen 93 DLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRELEFTKLMLDD-----DAKNY-H------AWSHRQWVLRFF 160 (318)
T ss_pred HHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchHHHHHHHHhc-----cccch-h------hhHHHHHHHHHH
Confidence 3555677888888888888888888888888888877 556666667665 33222 2 666777777778
Q ss_pred cCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHh-cC-----CHHHHHHHHHHHHHcCCCcHHHHHHHHhhH
Q 008887 463 EKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCN-VG-----RNAEAEKYLRLAAAHNPQYNELLEQLENND 535 (550)
Q Consensus 463 g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~-~g-----~~~eA~~~l~~al~~~p~~~~~~~~l~~~~ 535 (550)
+.+++-+.+..+.++.+ -.+- .+|...--+... .| ..++-+.+..+.+...|++..+|+-|....
T Consensus 161 ~~~~~EL~y~~~Lle~D-i~NN-------SAWN~Ryfvi~~~~~~~~~~~le~El~yt~~~I~~vP~NeSaWnYL~G~l 231 (318)
T KOG0530|consen 161 KDYEDELAYADELLEED-IRNN-------SAWNQRYFVITNTKGVISKAELERELNYTKDKILLVPNNESAWNYLKGLL 231 (318)
T ss_pred hhHHHHHHHHHHHHHHh-hhcc-------chhheeeEEEEeccCCccHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHH
Confidence 88888888888888775 3222 111111000000 11 233445566667777788887777665533
No 398
>PF10858 DUF2659: Protein of unknown function (DUF2659); InterPro: IPR022588 This bacterial family of proteins has no known function.
Probab=72.61 E-value=71 Score=28.88 Aligned_cols=122 Identities=16% Similarity=0.118 Sum_probs=72.1
Q ss_pred CChHHHHHHHHhhCCCCh--HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHHhc
Q 008887 386 ERPIPLLQLALNKEPDNI--NALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQE 463 (550)
Q Consensus 386 ~~A~~~~~~aL~~~p~~~--~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~g 463 (550)
+-|...++..+...-.-. -++..+...-...|.|.+|.+.+.+.++. .++.+.. .+|-.++.|.....
T Consensus 74 eLa~~tLEnLvt~snTKikEiA~leqva~kis~~~~~eaK~LlnkIi~n---------k~YSeis-tsYaRi~wc~~vid 143 (220)
T PF10858_consen 74 ELAFNTLENLVTNSNTKIKEIAALEQVAIKISEKKYSEAKQLLNKIIEN---------KEYSEIS-TSYARINWCCMVID 143 (220)
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHhh---------hhHHHHH-HHHHHHHHHHheec
Confidence 344555555444332221 23444555566778999999999998887 2222222 26666777766443
Q ss_pred C----HHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 008887 464 K----WEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHN 521 (550)
Q Consensus 464 ~----~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~ 521 (550)
+ ++.-.++. +-+.. .+....+..+.+-...|..-.+.|+..+|++.++.++..+
T Consensus 144 D~nl~i~dk~kL~-kyL~y---fdd~~kPFWatAtI~kaiwdik~nm~~~aeknL~~l~~Sn 201 (220)
T PF10858_consen 144 DQNLNIQDKEKLI-KYLNY---FDDEKKPFWATATIIKAIWDIKNNMKNQAEKNLKNLLASN 201 (220)
T ss_pred ccccChhhHHHHH-HHHhh---ccCCCCchHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhc
Confidence 2 22222222 22222 1222334566777778888889999999999999888764
No 399
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=72.49 E-value=11 Score=37.12 Aligned_cols=59 Identities=19% Similarity=0.104 Sum_probs=46.3
Q ss_pred HHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 008887 374 ALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISK 432 (550)
Q Consensus 374 ~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l 432 (550)
..+..|...|.+.+|+++.++++..+|-+-..+..+-.++...||--.+.++|++.-+.
T Consensus 284 kva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~v 342 (361)
T COG3947 284 KVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAEV 342 (361)
T ss_pred HHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHHH
Confidence 56667778888888888888888888888888888888888888877777777665444
No 400
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=71.02 E-value=31 Score=43.43 Aligned_cols=124 Identities=13% Similarity=0.040 Sum_probs=86.7
Q ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCC
Q 008887 400 PDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLK 479 (550)
Q Consensus 400 p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~ 479 (550)
.+-.++|...|++....|+++.|..++-+|.+. . . . ++....|..+..+|+-..|+..+++.++.+
T Consensus 1667 ~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~-----r---~-~-----~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1667 SRLGECWLQSARIARLAGHLQRAQNALLNAKES-----R---L-P-----EIVLERAKLLWQTGDELNALSVLQEILSKN 1732 (2382)
T ss_pred chhHHHHHHHHHHHHhcccHHHHHHHHHhhhhc-----c---c-c-----hHHHHHHHHHHhhccHHHHHHHHHHHHHhh
Confidence 345789999999999999999999999888777 1 1 1 255569999999999999999999999765
Q ss_pred CCCCccc-------cc--cchhHHHHHHHHHHhcCCH--HHHHHHHHHHHHcCCCcHHHHHHHHhhHHH
Q 008887 480 EPEEPKS-------KA--HYYDGLVVLASALCNVGRN--AEAEKYLRLAAAHNPQYNELLEQLENNDEE 537 (550)
Q Consensus 480 ~p~~~~~-------~~--~~~~~~~~La~~~~~~g~~--~eA~~~l~~al~~~p~~~~~~~~l~~~~~~ 537 (550)
-|+.... +. ....+.+.++.-..+.|+. ++-+.+|..+.+..|...+-+..+..+.+.
T Consensus 1733 ~~~~~~~~~~~p~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ewe~~hy~l~~yy~k 1801 (2382)
T KOG0890|consen 1733 FPDLHTPYTDTPQSVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPEWEDKHYHLGKYYDK 1801 (2382)
T ss_pred cccccCCccccchhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcccccCceeeHHHHHHH
Confidence 3442211 11 1223455555555666663 345678889999999766655545443333
No 401
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=70.63 E-value=20 Score=35.03 Aligned_cols=125 Identities=14% Similarity=0.102 Sum_probs=77.8
Q ss_pred HHHHHHHHcCCCCChHHHHHHHHhhC------------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCC
Q 008887 374 ALSVKFLSKGDKERPIPLLQLALNKE------------PDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTE 441 (550)
Q Consensus 374 ~la~~~~~~g~~~~A~~~~~~aL~~~------------p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~ 441 (550)
.+|..|+..|+|.+-.+.+++.-+.. ..-.+.+..--+.|..+++..+-...|++++.+... - -+
T Consensus 150 KLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSA--I-PH 226 (440)
T KOG1464|consen 150 KLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSA--I-PH 226 (440)
T ss_pred hHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhcc--C-Cc
Confidence 67778888888877666665544321 112455556667888888888888999999888211 1 12
Q ss_pred hhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcC
Q 008887 442 PEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVG 505 (550)
Q Consensus 442 ~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g 505 (550)
|.. +....-+=|..+.+.|++++|...|-+|.+.. .+....+....--|..||..+.+.|
T Consensus 227 PlI---mGvIRECGGKMHlreg~fe~AhTDFFEAFKNY-DEsGspRRttCLKYLVLANMLmkS~ 286 (440)
T KOG1464|consen 227 PLI---MGVIRECGGKMHLREGEFEKAHTDFFEAFKNY-DESGSPRRTTCLKYLVLANMLMKSG 286 (440)
T ss_pred hHH---HhHHHHcCCccccccchHHHHHhHHHHHHhcc-cccCCcchhHHHHHHHHHHHHHHcC
Confidence 211 11122244567889999999999998888775 4444333333334555666665554
No 402
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=70.62 E-value=17 Score=37.89 Aligned_cols=70 Identities=17% Similarity=0.110 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcC
Q 008887 405 ALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNL 478 (550)
Q Consensus 405 a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~ 478 (550)
+...+.+++...|||..|++.++.. ++....-...-+ ..-...+|.+|-+|.-.++|.+|+..|...+-.
T Consensus 124 SligLlRvh~LLGDY~~Alk~l~~i-dl~~~~l~~~V~---~~~is~~YyvGFaylMlrRY~DAir~f~~iL~y 193 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKVLENI-DLNKKGLYTKVP---ACHISTYYYVGFAYLMLRRYADAIRTFSQILLY 193 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHHhhcc-CcccchhhccCc---chheehHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456778888999999998876432 220000000001 011127889999999999999999999987754
No 403
>PF12854 PPR_1: PPR repeat
Probab=69.83 E-value=10 Score=24.26 Aligned_cols=27 Identities=15% Similarity=0.198 Sum_probs=22.9
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008887 402 NINALILMGQTQLQKGLLEEAVEYLEC 428 (550)
Q Consensus 402 ~~~a~~~lg~~~~~~g~~~eA~~~~~~ 428 (550)
+...|..+-..|.+.|+.++|.+.+++
T Consensus 6 d~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 6 DVVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred cHhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 456788899999999999999998865
No 404
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=68.07 E-value=39 Score=35.02 Aligned_cols=104 Identities=18% Similarity=0.140 Sum_probs=69.9
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCC
Q 008887 403 INALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPE 482 (550)
Q Consensus 403 ~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~ 482 (550)
-.++..+|.-|...|+.+.|++.|-++-.. .-+.. ..+..+.++-.+-...|+|..-..+..++... |.
T Consensus 150 Rra~~Dl~dhy~~cG~l~~Alr~YsR~RdY-----CTs~k----hvInm~ln~i~VSI~~~nw~hv~sy~~~A~st--~~ 218 (466)
T KOG0686|consen 150 RRALEDLGDHYLDCGQLDNALRCYSRARDY-----CTSAK----HVINMCLNLILVSIYMGNWGHVLSYISKAEST--PD 218 (466)
T ss_pred HHHHHHHHHHHHHhccHHHHHhhhhhhhhh-----hcchH----HHHHHHHHHHHHHHhhcchhhhhhHHHHHHhC--ch
Confidence 467889999999999999999999996544 22211 12235556777777889999888888887766 31
Q ss_pred --CccccccchhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008887 483 --EPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLA 517 (550)
Q Consensus 483 --~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~a 517 (550)
......-.......-|.+...+++|..|.+++-.+
T Consensus 219 ~~~~~~q~v~~kl~C~agLa~L~lkkyk~aa~~fL~~ 255 (466)
T KOG0686|consen 219 ANENLAQEVPAKLKCAAGLANLLLKKYKSAAKYFLLA 255 (466)
T ss_pred hhhhHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 00001112245555566667777999999887654
No 405
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=66.51 E-value=22 Score=36.95 Aligned_cols=104 Identities=14% Similarity=0.054 Sum_probs=68.6
Q ss_pred HHHHHHHHHcCCCCChHHHHHHHHhhC-----------CCChHHHHHHHHHHHHcCCHH----------HHHHHHHHH--
Q 008887 373 IALSVKFLSKGDKERPIPLLQLALNKE-----------PDNINALILMGQTQLQKGLLE----------EAVEYLECA-- 429 (550)
Q Consensus 373 ~~la~~~~~~g~~~~A~~~~~~aL~~~-----------p~~~~a~~~lg~~~~~~g~~~----------eA~~~~~~a-- 429 (550)
.+.|..++....|++|+.++-.|-+.. .+.+-....+.++|+..++.. .|.+.|.++
T Consensus 167 hekaRa~m~re~y~eAl~~LleADe~F~~Cd~klLe~VDNyallnLDIVWCYfrLknitcL~DAe~RL~ra~kgf~~syG 246 (568)
T KOG2561|consen 167 HEKARAAMEREMYSEALLVLLEADESFSLCDSKLLELVDNYALLNLDIVWCYFRLKNITCLPDAEVRLVRARKGFERSYG 246 (568)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcchhhhhcchhheehhhcccccCChHHHHHHHHHHhhhhhhh
Confidence 488889999999999998887775522 233344456778888777643 333333333
Q ss_pred --HHHhhhcCCCCChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhc
Q 008887 430 --ISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGN 477 (550)
Q Consensus 430 --l~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~ 477 (550)
+...+....+..|+.. .+...+.--|...+.+|+-++|.++++.+..
T Consensus 247 enl~Rl~~lKg~~spEra-L~lRL~LLQGV~~yHqg~~deAye~le~a~~ 295 (568)
T KOG2561|consen 247 ENLSRLRSLKGGQSPERA-LILRLELLQGVVAYHQGQRDEAYEALESAHA 295 (568)
T ss_pred hhhHhhhhccCCCChhHH-HHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 2223444566666443 2222455569999999999999999998754
No 406
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=66.30 E-value=35 Score=37.73 Aligned_cols=27 Identities=26% Similarity=0.406 Sum_probs=16.4
Q ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHH
Q 008887 400 PDNINALILMGQTQLQKGLLEEAVEYL 426 (550)
Q Consensus 400 p~~~~a~~~lg~~~~~~g~~~eA~~~~ 426 (550)
|++...+-.+|..+...|.-++|++.|
T Consensus 849 pe~s~llp~~a~mf~svGMC~qAV~a~ 875 (1189)
T KOG2041|consen 849 PEDSELLPVMADMFTSVGMCDQAVEAY 875 (1189)
T ss_pred CcccchHHHHHHHHHhhchHHHHHHHH
Confidence 555555556666666666666666554
No 407
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=65.46 E-value=1.8e+02 Score=30.38 Aligned_cols=141 Identities=13% Similarity=0.079 Sum_probs=94.5
Q ss_pred HHHHHHHcCCCCC-hHHHHHHHHhhCCCChHHHHHHHHHHHHc------------CCHHHHHHHHHHHHHHhhhcCCCCC
Q 008887 375 LSVKFLSKGDKER-PIPLLQLALNKEPDNINALILMGQTQLQK------------GLLEEAVEYLECAISKLFLAGHPTE 441 (550)
Q Consensus 375 la~~~~~~g~~~~-A~~~~~~aL~~~p~~~~a~~~lg~~~~~~------------g~~~eA~~~~~~al~l~~~~~~p~~ 441 (550)
.-......|.+++ ++++=.+.+..+|+...+|+..=.++... .-.++-+.+...+++. +|..
T Consensus 34 ~i~~~r~~~~yd~e~l~lt~~ll~~npe~~t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~-----npks 108 (421)
T KOG0529|consen 34 IIQKKREAKEYDEEHLELTSELLEKNPEFYTVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKV-----NPKS 108 (421)
T ss_pred HHHHHHhccccchHHHHHHHHHHhhCchhhhhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHh-----Cchh
Confidence 3345566677764 78888888999999888887654444322 2345556677778888 5554
Q ss_pred hhhHHHHHHHHHHHHHHHHHhcC--HHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHH----HhcCCHHHHHHHHH
Q 008887 442 PEAIDLLIVASQWSGVACIRQEK--WEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASAL----CNVGRNAEAEKYLR 515 (550)
Q Consensus 442 ~~~~~~l~~a~~~lg~~~~~~g~--~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~----~~~g~~~eA~~~l~ 515 (550)
- -+|+....++.+.+. +..-++.++++++.+ |++- .+|...=.++ .......+-+++..
T Consensus 109 Y-------~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D-~RNf-------h~W~YRRfV~~~~~~~~~~~~~El~ftt 173 (421)
T KOG0529|consen 109 Y-------GAWHHRKWVLQKNPHSDWNTELQLCEKALKQD-PRNF-------HAWHYRRFVVEQAERSRNLEKEELEFTT 173 (421)
T ss_pred H-------HHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC-cccc-------cchHHHHHHHHHHhcccccchhHHHHHH
Confidence 3 288999999887765 578889999999998 7654 3333322222 22223566677888
Q ss_pred HHHHcCCCcHHHHHHHHhhH
Q 008887 516 LAAAHNPQYNELLEQLENND 535 (550)
Q Consensus 516 ~al~~~p~~~~~~~~l~~~~ 535 (550)
+++.-|+.+-.+|..-...+
T Consensus 174 ~~I~~nfSNYsaWhyRs~lL 193 (421)
T KOG0529|consen 174 KLINDNFSNYSAWHYRSLLL 193 (421)
T ss_pred HHHhccchhhhHHHHHHHHH
Confidence 88888888877777655433
No 408
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=65.43 E-value=8.6 Score=23.41 Aligned_cols=30 Identities=27% Similarity=0.393 Sum_probs=23.8
Q ss_pred CCCCChHHHHHHHHhhCCCChHHHHHHHHH
Q 008887 383 GDKERPIPLLQLALNKEPDNINALILMGQT 412 (550)
Q Consensus 383 g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~ 412 (550)
|+.++|...|+++++..|.+...|...+..
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~ 30 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAEF 30 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 456778889999999888888888776643
No 409
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=65.06 E-value=45 Score=32.99 Aligned_cols=110 Identities=11% Similarity=-0.042 Sum_probs=71.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccc
Q 008887 407 ILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKS 486 (550)
Q Consensus 407 ~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~ 486 (550)
+..+......+..++-++.+.+.++..+ ..++ + ....+++.++|..|.+.++.+.+.+++++.++. ....+.
T Consensus 79 fD~~~~n~l~kkneeki~Elde~i~~~e----edng-E-~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~--a~stg~ 150 (412)
T COG5187 79 FDRGRMNTLLKKNEEKIEELDERIREKE----EDNG-E-TEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRD--AMSTGL 150 (412)
T ss_pred hhhHHHHHHHHhhHHHHHHHHHHHHHHh----hccc-c-hHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH--HHhccc
Confidence 3445555555666777778877776631 1121 1 122358999999999999999999999998876 344444
Q ss_pred cccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCc
Q 008887 487 KAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQY 524 (550)
Q Consensus 487 ~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~ 524 (550)
+.+..-....+|-.|..+.-.+|.++.....++...+.
T Consensus 151 KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDW 188 (412)
T COG5187 151 KIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDW 188 (412)
T ss_pred chhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCH
Confidence 55445555666666666555566666666666655443
No 410
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=64.82 E-value=49 Score=27.53 Aligned_cols=48 Identities=19% Similarity=0.230 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCC
Q 008887 371 ELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGL 418 (550)
Q Consensus 371 ~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~ 418 (550)
.....|...+..||+++|++...++-+..+...-.+..-+++...+||
T Consensus 61 ~al~~Gl~al~~G~~~~A~k~~~~a~~~~~~~~l~~L~AA~AA~~~gd 108 (108)
T PF07219_consen 61 RALSRGLIALAEGDWQRAEKLLAKAAKLSDNPLLNYLLAARAAQAQGD 108 (108)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC
Confidence 445888999999999999999999976654444445555666666654
No 411
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=64.82 E-value=22 Score=35.50 Aligned_cols=73 Identities=10% Similarity=0.012 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHH-HHHHHHhcCCHHHHHHHHHHHHHcCCCcHHHHH
Q 008887 451 ASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVV-LASALCNVGRNAEAEKYLRLAAAHNPQYNELLE 529 (550)
Q Consensus 451 a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~-La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~ 529 (550)
.|...+....+.|.|.+--..|.++++.. |.+. +.|.. -+.-+...++.+.+++.+.+++++||+.+..|.
T Consensus 109 ~w~~y~~Y~~k~k~y~~~~nI~~~~l~kh-P~nv-------dlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~ 180 (435)
T COG5191 109 IWSQYAAYVIKKKMYGEMKNIFAECLTKH-PLNV-------DLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWI 180 (435)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCc-------eeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHH
Confidence 34445555667788999999999999998 9888 66655 344578899999999999999999999998776
Q ss_pred HH
Q 008887 530 QL 531 (550)
Q Consensus 530 ~l 531 (550)
..
T Consensus 181 ey 182 (435)
T COG5191 181 EY 182 (435)
T ss_pred HH
Confidence 44
No 412
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=64.68 E-value=19 Score=35.89 Aligned_cols=53 Identities=13% Similarity=0.111 Sum_probs=25.5
Q ss_pred HHcCCCCChHHHHHHHHhhCCCChHHHHH-HHHHHHHcCCHHHHHHHHHHHHHH
Q 008887 380 LSKGDKERPIPLLQLALNKEPDNINALIL-MGQTQLQKGLLEEAVEYLECAISK 432 (550)
Q Consensus 380 ~~~g~~~~A~~~~~~aL~~~p~~~~a~~~-lg~~~~~~g~~~eA~~~~~~al~l 432 (550)
...|-+.+--..|.++++.+|.+++.|.. -+.-+...++++.+...+.++++.
T Consensus 118 ~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~ 171 (435)
T COG5191 118 IKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRM 171 (435)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhcc
Confidence 33344444444555555555555554443 333444445555555555555555
No 413
>COG3014 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=63.27 E-value=27 Score=35.21 Aligned_cols=42 Identities=17% Similarity=0.092 Sum_probs=25.5
Q ss_pred HHHHHHHHhhCCCChHHH---HHHHHHHHHcCCHHHHHHHHHHHH
Q 008887 389 IPLLQLALNKEPDNINAL---ILMGQTQLQKGLLEEAVEYLECAI 430 (550)
Q Consensus 389 ~~~~~~aL~~~p~~~~a~---~~lg~~~~~~g~~~eA~~~~~~al 430 (550)
...|+++.+.-|++.... ..-|.++...|||.+....+..+-
T Consensus 41 ~~~y~Q~~q~~kk~~~~il~~L~~Gl~a~~~~dya~S~~~ldAae 85 (449)
T COG3014 41 KKAYEQSKQFTKKKKNALLWDLQNGLSALYARDYATSLGVLDAAE 85 (449)
T ss_pred hhHHHHHHHhhhhhhHHHHHhhhhhHHHHHhhhHHHhhhHHHHHH
Confidence 345556655555443332 246888888888887777665543
No 414
>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=62.29 E-value=1.8e+02 Score=29.35 Aligned_cols=79 Identities=13% Similarity=0.096 Sum_probs=55.6
Q ss_pred CCCChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008887 438 HPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLA 517 (550)
Q Consensus 438 ~p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~a 517 (550)
.|......+.+......+|..|.+.++++.|...+.- +..+.-....+.......+..+|++|.+.|+..+|..+..++
T Consensus 92 q~rvisfeEqv~~irl~LAsiYE~Eq~~~~aaq~L~~-I~~~tg~~~~d~~~kl~l~iriarlyLe~~d~veae~~inRa 170 (399)
T KOG1497|consen 92 QPRVISFEEQVASIRLHLASIYEKEQNWRDAAQVLVG-IPLDTGQKAYDVEQKLLLCIRIARLYLEDDDKVEAEAYINRA 170 (399)
T ss_pred ccccccHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhc-cCcccchhhhhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 5554434444444677899999999999999988864 333210111122235567889999999999999999998875
No 415
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=62.21 E-value=85 Score=33.13 Aligned_cols=30 Identities=23% Similarity=0.101 Sum_probs=22.8
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 008887 491 YDGLVVLASALCNVGRNAEAEKYLRLAAAH 520 (550)
Q Consensus 491 ~~~~~~La~~~~~~g~~~eA~~~l~~al~~ 520 (550)
..+....++++...|.+.+|...+-+....
T Consensus 300 ~R~~ll~~ell~~~~~~~~a~~~~~~~~~~ 329 (414)
T PF12739_consen 300 LRCALLLAELLKSRGGYWEAADQLIRWTSE 329 (414)
T ss_pred HHHHHHHHHHHHhcCccHHHHHHHHHHHHH
Confidence 466777788888888888888777776655
No 416
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=62.00 E-value=54 Score=33.01 Aligned_cols=27 Identities=4% Similarity=0.036 Sum_probs=19.3
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHhcCC
Q 008887 453 QWSGVACIRQEKWEEGIAHLERIGNLK 479 (550)
Q Consensus 453 ~~lg~~~~~~g~~~eA~~~~~~al~~~ 479 (550)
..++.|..++|+..||++.++...+..
T Consensus 279 RRLAMCARklGrlrEA~K~~RDL~ke~ 305 (556)
T KOG3807|consen 279 RRLAMCARKLGRLREAVKIMRDLMKEF 305 (556)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHhhhc
Confidence 357777778888888888777765544
No 417
>PF12854 PPR_1: PPR repeat
Probab=61.73 E-value=16 Score=23.35 Aligned_cols=25 Identities=24% Similarity=0.287 Sum_probs=22.8
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHH
Q 008887 492 DGLVVLASALCNVGRNAEAEKYLRL 516 (550)
Q Consensus 492 ~~~~~La~~~~~~g~~~eA~~~l~~ 516 (550)
..|..+-..|.+.|+.++|.+.+++
T Consensus 8 ~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 8 VTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 5788999999999999999999875
No 418
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=61.53 E-value=95 Score=33.45 Aligned_cols=83 Identities=11% Similarity=0.056 Sum_probs=61.4
Q ss_pred ChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHHhcCHH
Q 008887 387 RPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWE 466 (550)
Q Consensus 387 ~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~g~~~ 466 (550)
...+.+....+..|+++.-....+..+...|+.+.|+..++..++. ...+.-...++.+|.++..+.+|.
T Consensus 251 ~~~~~Ll~~~~~~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~~----------~~kQ~~~l~~fE~aw~~v~~~~~~ 320 (546)
T KOG3783|consen 251 ECEKALKKYRKRYPKGALWLLMEARILSIKGNSEAAIDMESLSIPI----------RMKQVKSLMVFERAWLSVGQHQYS 320 (546)
T ss_pred HHHHHhHHHHHhCCCCccHHHHHHHHHHHcccHHHHHHHHHhcccH----------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555678888888888899999999977788877777653 122333336678899999999999
Q ss_pred HHHHHHHHHhcCC
Q 008887 467 EGIAHLERIGNLK 479 (550)
Q Consensus 467 eA~~~~~~al~~~ 479 (550)
+|...++...+..
T Consensus 321 ~aad~~~~L~des 333 (546)
T KOG3783|consen 321 RAADSFDLLRDES 333 (546)
T ss_pred HHhhHHHHHHhhh
Confidence 9999999877663
No 419
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=61.39 E-value=25 Score=41.11 Aligned_cols=64 Identities=17% Similarity=0.008 Sum_probs=32.6
Q ss_pred HHHHHHcCCHHHHHHHHHHH------HHHhhhcCCCCChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcC
Q 008887 410 GQTQLQKGLLEEAVEYLECA------ISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNL 478 (550)
Q Consensus 410 g~~~~~~g~~~eA~~~~~~a------l~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~ 478 (550)
|..|...|+.++|+++|+.+ +.++.+...+ ..+... .-..|+--+.+++++-+|.+...+.+..
T Consensus 959 al~Ye~~GklekAl~a~~~~~dWr~~l~~a~ql~~~----~de~~~-~a~~L~s~L~e~~kh~eAa~il~e~~sd 1028 (1265)
T KOG1920|consen 959 ALMYERCGKLEKALKAYKECGDWREALSLAAQLSEG----KDELVI-LAEELVSRLVEQRKHYEAAKILLEYLSD 1028 (1265)
T ss_pred HHHHHHhccHHHHHHHHHHhccHHHHHHHHHhhcCC----HHHHHH-HHHHHHHHHHHcccchhHHHHHHHHhcC
Confidence 45566666777776666443 2221111111 111111 2234556666777777777777665554
No 420
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=60.86 E-value=2e+02 Score=29.35 Aligned_cols=64 Identities=11% Similarity=0.019 Sum_probs=45.8
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008887 454 WSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAA 519 (550)
Q Consensus 454 ~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~ 519 (550)
.+...|...++|.+|+......++. -...+++....+.+..-..+|+...+..+|...+..+-.
T Consensus 133 rli~Ly~d~~~YteAlaL~~~L~rE--lKKlDDK~lLvev~llESK~y~~l~Nl~KakasLTsART 196 (411)
T KOG1463|consen 133 RLIRLYNDTKRYTEALALINDLLRE--LKKLDDKILLVEVHLLESKAYHALRNLPKAKASLTSART 196 (411)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHH--HHhcccccceeeehhhhhHHHHHHhcchhHHHHHHHHHH
Confidence 3677888999999999887665542 111223334557788888899999999999988876643
No 421
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=60.72 E-value=22 Score=39.70 Aligned_cols=126 Identities=21% Similarity=0.191 Sum_probs=86.5
Q ss_pred CChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHHhcCH
Q 008887 386 ERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKW 465 (550)
Q Consensus 386 ~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~g~~ 465 (550)
+++...+.+++... .-|+..++.+++.+|.--|..++.+ -|.+........ ....-..++...|+|
T Consensus 44 ~di~v~l~ra~~~~--------~E~n~~~~K~d~~~~~~~~~~~~~l-----lp~~~~~~a~~~-~~~~s~~m~~~l~~~ 109 (748)
T KOG4151|consen 44 EDIEVFLSRALELK--------EEGNKLFQKRDYEGAMFRYDCAIKL-----LPKDHHVVATLR-SNQASCYMQLGLGEY 109 (748)
T ss_pred cchHHHHHHHHHHH--------hhhhHHhhhhhhhccchhhhhhhee-----ccccchhhhhHH-HHHHHHHhhcCccch
Confidence 45555555554432 3456777888888887777777777 553331221111 222233445567889
Q ss_pred HHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHHHHHHHh
Q 008887 466 EEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQLEN 533 (550)
Q Consensus 466 ~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~l~~ 533 (550)
.+++..++-++... |... .++...+.+|...++.+-|.+.+.-.....|.+..+...+++
T Consensus 110 ~~~~~E~~la~~~~-p~i~-------~~Ll~r~~~y~al~k~d~a~rdl~i~~~~~p~~~~~~eif~e 169 (748)
T KOG4151|consen 110 PKAIPECELALESQ-PRIS-------KALLKRARKYEALNKLDLAVRDLRIVEKMDPSNVSASEIFEE 169 (748)
T ss_pred hhhcCchhhhhhcc-chHH-------HHHhhhhhHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHH
Confidence 99999998888887 7555 788888899999999999999988888899999776665544
No 422
>PRK00247 putative inner membrane protein translocase component YidC; Validated
Probab=60.17 E-value=90 Score=32.98 Aligned_cols=17 Identities=6% Similarity=0.114 Sum_probs=13.7
Q ss_pred cHHHHHHHHHHHhhhcC
Q 008887 103 PVRALISFLDTYHDFTG 119 (550)
Q Consensus 103 p~~~~~~~l~~~h~~~g 119 (550)
.+-++.++|.++|...+
T Consensus 5 ~~~Pvs~vm~~~h~~~~ 21 (429)
T PRK00247 5 FIYPVSGVMKLWHLLLH 21 (429)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 35678899999999776
No 423
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=59.34 E-value=24 Score=36.69 Aligned_cols=111 Identities=17% Similarity=0.070 Sum_probs=57.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHHhcCH----------HHHHHHHHHHh
Q 008887 407 ILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKW----------EEGIAHLERIG 476 (550)
Q Consensus 407 ~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~g~~----------~eA~~~~~~al 476 (550)
+..|.+.++.+.|++|+.++-.|=+.. ...++.--+..|.+.....-+-+||+...+. ..|.+.|.++.
T Consensus 167 hekaRa~m~re~y~eAl~~LleADe~F-~~Cd~klLe~VDNyallnLDIVWCYfrLknitcL~DAe~RL~ra~kgf~~sy 245 (568)
T KOG2561|consen 167 HEKARAAMEREMYSEALLVLLEADESF-SLCDSKLLELVDNYALLNLDIVWCYFRLKNITCLPDAEVRLVRARKGFERSY 245 (568)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHH-HhhhHHHHHhhcchhhhhcchhheehhhcccccCChHHHHHHHHHHhhhhhh
Confidence 445666777777777777766554442 1112211112222222222344566654432 22333333222
Q ss_pred --------cCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008887 477 --------NLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAA 519 (550)
Q Consensus 477 --------~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~ 519 (550)
.+..+..+ .+.-....+..-|...+..|+.++|.++++.+..
T Consensus 246 Genl~Rl~~lKg~~sp-EraL~lRL~LLQGV~~yHqg~~deAye~le~a~~ 295 (568)
T KOG2561|consen 246 GENLSRLRSLKGGQSP-ERALILRLELLQGVVAYHQGQRDEAYEALESAHA 295 (568)
T ss_pred hhhhHhhhhccCCCCh-hHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 22111111 1112456677788899999999999999998643
No 424
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=59.22 E-value=16 Score=21.95 Aligned_cols=28 Identities=21% Similarity=0.264 Sum_probs=23.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 008887 493 GLVVLASALCNVGRNAEAEKYLRLAAAH 520 (550)
Q Consensus 493 ~~~~La~~~~~~g~~~eA~~~l~~al~~ 520 (550)
.|..+-.+|.+.|+.++|.+.+++..+.
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~ 29 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRER 29 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHC
Confidence 3667788999999999999999987653
No 425
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=59.00 E-value=1.8e+02 Score=30.26 Aligned_cols=28 Identities=11% Similarity=-0.039 Sum_probs=23.7
Q ss_pred HHHHHHHHcCCCCChHHHHHHHHhhCCC
Q 008887 374 ALSVKFLSKGDKERPIPLLQLALNKEPD 401 (550)
Q Consensus 374 ~la~~~~~~g~~~~A~~~~~~aL~~~p~ 401 (550)
..+..+++.++|..|.+.|++++...+.
T Consensus 135 ~~~r~l~n~~dy~aA~~~~~~L~~r~l~ 162 (380)
T TIGR02710 135 GYARRAINAFDYLFAHARLETLLRRLLS 162 (380)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHhcccC
Confidence 5667889999999999999999887655
No 426
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=58.90 E-value=1.7e+02 Score=28.06 Aligned_cols=113 Identities=15% Similarity=0.080 Sum_probs=58.1
Q ss_pred HHcCCHHHHHHHHHHHHHHhhhcCCCCCh--hhHHHHHHHHHHHHHHHHHhcCHHHH--HHHHHHHhcCC-CCCCccccc
Q 008887 414 LQKGLLEEAVEYLECAISKLFLAGHPTEP--EAIDLLIVASQWSGVACIRQEKWEEG--IAHLERIGNLK-EPEEPKSKA 488 (550)
Q Consensus 414 ~~~g~~~eA~~~~~~al~l~~~~~~p~~~--~~~~~l~~a~~~lg~~~~~~g~~~eA--~~~~~~al~~~-~p~~~~~~~ 488 (550)
+..|+++.|++..+.|++... .-|..- ....++.+-...-+......|+.-+. ...+.+..... =|+..
T Consensus 94 ~D~Gd~~~AL~ia~yAI~~~l--~~Pd~f~R~~~t~vaeev~~~A~~~~~ag~~~e~~~~~~~~~l~~~~dmpd~v---- 167 (230)
T PHA02537 94 FDIGDFDGALEIAEYALEHGL--TMPDQFRRTLANFVAEEVANAALKAASAGESVEPYFLRVFLDLTTEWDMPDEV---- 167 (230)
T ss_pred eeccCHHHHHHHHHHHHHcCC--CCCccccCCchHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHhcCCCChHH----
Confidence 467899999999999988831 112111 11122222222233333444442111 11222221110 01111
Q ss_pred cchhHHHHHHHHHH---------hcCCHHHHHHHHHHHHHcCCCcH--HHHHHHHh
Q 008887 489 HYYDGLVVLASALC---------NVGRNAEAEKYLRLAAAHNPQYN--ELLEQLEN 533 (550)
Q Consensus 489 ~~~~~~~~La~~~~---------~~g~~~eA~~~l~~al~~~p~~~--~~~~~l~~ 533 (550)
.+..+...|..+. ..++..+|..++++++++||+.. ...+.+++
T Consensus 168 -rAKl~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k~GVK~~i~~l~~ 222 (230)
T PHA02537 168 -RAKLYKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDKCGVKKDIERLER 222 (230)
T ss_pred -HHHHHHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCCCChHHHHHHHHH
Confidence 3355666777663 55688899999999999998743 33444443
No 427
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=58.52 E-value=2.1e+02 Score=30.10 Aligned_cols=154 Identities=16% Similarity=0.130 Sum_probs=80.5
Q ss_pred ChHHHH-HHHHHHHHcCCCCChHHHHHHHHhhCCCC------hHHHHHHHHHHHHcCCH-------HHHHHHHHHHHHHh
Q 008887 368 TPKELI-ALSVKFLSKGDKERPIPLLQLALNKEPDN------INALILMGQTQLQKGLL-------EEAVEYLECAISKL 433 (550)
Q Consensus 368 ~~~~l~-~la~~~~~~g~~~~A~~~~~~aL~~~p~~------~~a~~~lg~~~~~~g~~-------~eA~~~~~~al~l~ 433 (550)
+++... .+|..++..|||+.|...|+.+.+..-.+ +.+....|.+....+.. ++...+++.|....
T Consensus 206 S~E~q~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~Dkaw~~~A~~~Em~alsl~~~~~~~~~k~~~~~~~~~le~A~~~Y 285 (414)
T PF12739_consen 206 SPEAQMRRLADLAFMLRDYELAYSTYRLLKKDFKNDKAWKYLAGAQEMAALSLLMQGQSISAKIRKDEIEPYLENAYYTY 285 (414)
T ss_pred ChHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHhhchhHHHHHhHHHHHHHHHHhcCCCCccccccccHHHHHHHHHHHH
Confidence 344443 89999999999999999999988744322 23334455555655533 35566666666553
Q ss_pred hhcCCCCChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcC--CC---------------------CC-Cc---cc
Q 008887 434 FLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNL--KE---------------------PE-EP---KS 486 (550)
Q Consensus 434 ~~~~~p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~--~~---------------------p~-~~---~~ 486 (550)
...+.+...... .-..+....+.++...|.+.+|...+-+.... ++ +. .+ ..
T Consensus 286 ~~~~~~~~~~~~-~a~R~~ll~~ell~~~~~~~~a~~~~~~~~~~~l~~~l~~~~~alllE~~a~~~~~~~~~~~~~~~~ 364 (414)
T PF12739_consen 286 LKSALPRCSLPY-YALRCALLLAELLKSRGGYWEAADQLIRWTSEILESDLRPFGSALLLEQAAYCYASLRSNRPSPGLT 364 (414)
T ss_pred Hhhhcccccccc-chHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHHhhcccccCCCCccch
Confidence 221111000000 01112333445555566655554433332222 10 00 00 01
Q ss_pred cccchhHHHHHH-HHHHhcCCHHHHHHHHHHHHHcCC
Q 008887 487 KAHYYDGLVVLA-SALCNVGRNAEAEKYLRLAAAHNP 522 (550)
Q Consensus 487 ~~~~~~~~~~La-~~~~~~g~~~eA~~~l~~al~~~p 522 (550)
+.+..-.|..|| .-|.+.|+...|..+|.+++....
T Consensus 365 r~RK~af~~vLAg~~~~~~~~~~~a~rcy~~a~~vY~ 401 (414)
T PF12739_consen 365 RFRKYAFHMVLAGHRYSKAGQKKHALRCYKQALQVYE 401 (414)
T ss_pred hhHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhC
Confidence 122333444444 557778888888888888776543
No 428
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=58.47 E-value=1.2e+02 Score=30.80 Aligned_cols=153 Identities=10% Similarity=0.036 Sum_probs=90.5
Q ss_pred HHHHHHHHcCCCCChHHHHHHHHh----hCCC--ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHH
Q 008887 374 ALSVKFLSKGDKERPIPLLQLALN----KEPD--NINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDL 447 (550)
Q Consensus 374 ~la~~~~~~g~~~~A~~~~~~aL~----~~p~--~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~ 447 (550)
.+...|+..++|.+|+.+....++ .+.. -.+.+..-..+|....+..+|...+..|-... |.-+- .+..
T Consensus 133 rli~Ly~d~~~YteAlaL~~~L~rElKKlDDK~lLvev~llESK~y~~l~Nl~KakasLTsART~A----naiYc-pPql 207 (411)
T KOG1463|consen 133 RLIRLYNDTKRYTEALALINDLLRELKKLDDKILLVEVHLLESKAYHALRNLPKAKASLTSARTTA----NAIYC-PPQL 207 (411)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhh----ccccc-CHHH
Confidence 678889999999999998887766 2222 34566667788888999999988887765442 11110 1111
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHH--HHHHHcCCCcH
Q 008887 448 LIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYL--RLAAAHNPQYN 525 (550)
Q Consensus 448 l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l--~~al~~~p~~~ 525 (550)
-...-..-|..+....+|+-|..+|-++.+-. +...++..-..++.++--|-...+..++-...+ +.+++.+....
T Consensus 208 Qa~lDLqSGIlha~ekDykTafSYFyEAfEgf--~s~~~~v~A~~sLKYMlLcKIMln~~ddv~~lls~K~~l~y~g~~i 285 (411)
T KOG1463|consen 208 QATLDLQSGILHAAEKDYKTAFSYFYEAFEGF--DSLDDDVKALTSLKYMLLCKIMLNLPDDVAALLSAKLALKYAGRDI 285 (411)
T ss_pred HHHHHHhccceeecccccchHHHHHHHHHccc--cccCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHhhHHHHhccCcch
Confidence 11111234666777799999999999999874 233232222233334444444455555544333 23455554444
Q ss_pred HHHHHHHh
Q 008887 526 ELLEQLEN 533 (550)
Q Consensus 526 ~~~~~l~~ 533 (550)
++.+.+.+
T Consensus 286 ~AmkavAe 293 (411)
T KOG1463|consen 286 DAMKAVAE 293 (411)
T ss_pred HHHHHHHH
Confidence 44444433
No 429
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=57.60 E-value=87 Score=30.72 Aligned_cols=96 Identities=13% Similarity=0.055 Sum_probs=51.9
Q ss_pred HHHHHHHHHcCCCCChHHHHHHHHhh-----CCCChHHHHHHHHHHHHcCCHH-HHHHHHHHHHHHhhhcCCCCChhhHH
Q 008887 373 IALSVKFLSKGDKERPIPLLQLALNK-----EPDNINALILMGQTQLQKGLLE-EAVEYLECAISKLFLAGHPTEPEAID 446 (550)
Q Consensus 373 ~~la~~~~~~g~~~~A~~~~~~aL~~-----~p~~~~a~~~lg~~~~~~g~~~-eA~~~~~~al~l~~~~~~p~~~~~~~ 446 (550)
+.-|..+++.|++.-|.++..-.++. .+.+.+....+..+....+.-+ +-.+..+++++-. ..+.+..+..
T Consensus 14 ~~Ga~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~~fi~~ai~WS-~~~~~~~Gdp-- 90 (260)
T PF04190_consen 14 YSGALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPERKKFIKAAIKWS-KFGSYKFGDP-- 90 (260)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHHHHHHHHHHHH-HTSS-TT--H--
T ss_pred HHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHH-ccCCCCCCCH--
Confidence 35566667777777666665555442 2344445566666666665544 5555566666664 2222233322
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHH
Q 008887 447 LLIVASQWSGVACIRQEKWEEGIAHLER 474 (550)
Q Consensus 447 ~l~~a~~~lg~~~~~~g~~~eA~~~~~~ 474 (550)
..+..+|..+.+.|++.+|..+|-.
T Consensus 91 ---~LH~~~a~~~~~e~~~~~A~~Hfl~ 115 (260)
T PF04190_consen 91 ---ELHHLLAEKLWKEGNYYEAERHFLL 115 (260)
T ss_dssp ---HHHHHHHHHHHHTT-HHHHHHHHHT
T ss_pred ---HHHHHHHHHHHhhccHHHHHHHHHh
Confidence 2556678888888888888777743
No 430
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=56.89 E-value=25 Score=21.18 Aligned_cols=29 Identities=24% Similarity=0.204 Sum_probs=25.1
Q ss_pred CCHHHHHHHHHHHHHcCCCcHHHHHHHHh
Q 008887 505 GRNAEAEKYLRLAAAHNPQYNELLEQLEN 533 (550)
Q Consensus 505 g~~~eA~~~l~~al~~~p~~~~~~~~l~~ 533 (550)
|+.++|...|++++...|.....|....+
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~ 29 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAE 29 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 57899999999999999999988876654
No 431
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=56.36 E-value=2.9e+02 Score=29.86 Aligned_cols=147 Identities=10% Similarity=-0.007 Sum_probs=92.1
Q ss_pred HHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHH
Q 008887 370 KELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLI 449 (550)
Q Consensus 370 ~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~ 449 (550)
-++++++..|... ..++-....++..+.+-++...-..++..|.+ ++-+.+..+|.+++... -|... .....
T Consensus 100 mal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~~yEk-ik~sk~a~~f~Ka~yrf----I~~~q--~~~i~ 171 (711)
T COG1747 100 MALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELADKYEK-IKKSKAAEFFGKALYRF----IPRRQ--NAAIK 171 (711)
T ss_pred HHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHHHHHH-hchhhHHHHHHHHHHHh----cchhh--hhhHH
Confidence 3677888888888 66777888888888888888888888888776 89999999999998873 22111 11111
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHH-HHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHHH
Q 008887 450 VASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLV-VLASALCNVGRNAEAEKYLRLAAAHNPQYNELL 528 (550)
Q Consensus 450 ~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~-~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~ 528 (550)
+.|-.+- .+--.+.|.-+....+.-... . ...+...+ .+-.-|....++++|++.+...++.+..+.-++
T Consensus 172 evWeKL~--~~i~dD~D~fl~l~~kiqt~l--g-----~~~~~Vl~qdv~~~Ys~~eN~~eai~Ilk~il~~d~k~~~ar 242 (711)
T COG1747 172 EVWEKLP--ELIGDDKDFFLRLQKKIQTKL--G-----EGRGSVLMQDVYKKYSENENWTEAIRILKHILEHDEKDVWAR 242 (711)
T ss_pred HHHHHHH--HhccccHHHHHHHHHHHHHhh--c-----cchHHHHHHHHHHHhccccCHHHHHHHHHHHhhhcchhhhHH
Confidence 1222221 111233333333333322111 1 11223333 333567788899999999999999887777666
Q ss_pred HHHHh
Q 008887 529 EQLEN 533 (550)
Q Consensus 529 ~~l~~ 533 (550)
+++-+
T Consensus 243 ~~~i~ 247 (711)
T COG1747 243 KEIIE 247 (711)
T ss_pred HHHHH
Confidence 65543
No 432
>PF13041 PPR_2: PPR repeat family
Probab=56.28 E-value=50 Score=22.76 Aligned_cols=31 Identities=13% Similarity=0.155 Sum_probs=26.7
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 008887 402 NINALILMGQTQLQKGLLEEAVEYLECAISK 432 (550)
Q Consensus 402 ~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l 432 (550)
+...|..+-..|.+.|++++|.+.|++..+.
T Consensus 2 ~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~ 32 (50)
T PF13041_consen 2 DVVTYNTLISGYCKAGKFEEALKLFKEMKKR 32 (50)
T ss_pred chHHHHHHHHHHHHCcCHHHHHHHHHHHHHc
Confidence 3467888889999999999999999998876
No 433
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=56.08 E-value=78 Score=36.83 Aligned_cols=55 Identities=15% Similarity=0.225 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008887 451 ASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAA 518 (550)
Q Consensus 451 a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al 518 (550)
.|..+|.+..+.|...+|++.|-+ .+|+ ..+...-.+..+.|+|++-+.++..+-
T Consensus 1106 vWsqlakAQL~~~~v~dAieSyik------adDp-------s~y~eVi~~a~~~~~~edLv~yL~MaR 1160 (1666)
T KOG0985|consen 1106 VWSQLAKAQLQGGLVKDAIESYIK------ADDP-------SNYLEVIDVASRTGKYEDLVKYLLMAR 1160 (1666)
T ss_pred HHHHHHHHHHhcCchHHHHHHHHh------cCCc-------HHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 455566666666666666666644 2333 455555566666666666666555443
No 434
>KOG2758 consensus Translation initiation factor 3, subunit e (eIF-3e) [Translation, ribosomal structure and biogenesis]
Probab=56.07 E-value=2.3e+02 Score=28.63 Aligned_cols=147 Identities=13% Similarity=0.057 Sum_probs=85.7
Q ss_pred hHHHHHHHHHHHHcCCCCChHHHHHHHHh--hC--CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCC-----
Q 008887 369 PKELIALSVKFLSKGDKERPIPLLQLALN--KE--PDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHP----- 439 (550)
Q Consensus 369 ~~~l~~la~~~~~~g~~~~A~~~~~~aL~--~~--p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p----- 439 (550)
-+.++..|...+..|+|..|-.++-.... .+ +++..++.+.--.-....+|+.|.+.+.+.-+.- .. ++
T Consensus 129 i~~lykyakfqyeCGNY~gAs~yLY~~r~l~~~~d~n~lsalwGKlASEIL~qnWd~A~edL~rLre~I-Ds-~~f~~~~ 206 (432)
T KOG2758|consen 129 IETLYKYAKFQYECGNYSGASDYLYFYRALVSDPDRNYLSALWGKLASEILTQNWDGALEDLTRLREYI-DS-KSFSTSA 206 (432)
T ss_pred HHHHHHHHHHHHhccCcccHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH-cc-cccccHH
Confidence 35678999999999999999887654443 33 3345555555445556788999988876665441 00 11
Q ss_pred ------------------CChhhHHHHHHH------------------HHHHHHHHHH-hcCHHHHHHHHHHHhcCCCCC
Q 008887 440 ------------------TEPEAIDLLIVA------------------SQWSGVACIR-QEKWEEGIAHLERIGNLKEPE 482 (550)
Q Consensus 440 ------------------~~~~~~~~l~~a------------------~~~lg~~~~~-~g~~~eA~~~~~~al~~~~p~ 482 (550)
++|...+.+++. ..+++.+..- +.+...+++.+-|+++...-.
T Consensus 207 ~~l~qRtWLiHWslfv~fnhpkgrd~iid~fly~p~YLNaIQt~cPhllRYLatAvvtnk~~rr~~lkdlvkVIqqE~ys 286 (432)
T KOG2758|consen 207 QQLQQRTWLIHWSLFVFFNHPKGRDTIIDMFLYQPPYLNAIQTSCPHLLRYLATAVVTNKRRRRNRLKDLVKVIQQESYS 286 (432)
T ss_pred HHHHHHHHHHHHHHHhhccCCChhhHHHHHHccCHHHHHHHHhhCHHHHHHHHHHhhcchHhhHHHHHHHHHHHHHhccc
Confidence 111111222111 1123333322 256777778888887764222
Q ss_pred CccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCc
Q 008887 483 EPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQY 524 (550)
Q Consensus 483 ~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~ 524 (550)
.. +.....-.|++-.=|+|+|...++++-+.--++
T Consensus 287 Yk-------DPiteFl~clyvn~DFdgAq~kl~eCeeVl~nD 321 (432)
T KOG2758|consen 287 YK-------DPITEFLECLYVNYDFDGAQKKLRECEEVLVND 321 (432)
T ss_pred cC-------CcHHHHHHHHhhccchHHHHHHHHHHHHHHhcc
Confidence 22 334455566666778999998888765544333
No 435
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=55.75 E-value=1.3e+02 Score=25.78 Aligned_cols=120 Identities=19% Similarity=0.254 Sum_probs=74.7
Q ss_pred HHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHH
Q 008887 376 SVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWS 455 (550)
Q Consensus 376 a~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~l 455 (550)
-..+...+.......+++.+++.++.+...+..+..+|.+.+ .++..++++.- . +.-+. . ..
T Consensus 14 v~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~~-~~~ll~~l~~~--~-----~~yd~-~---------~~ 75 (140)
T smart00299 14 VELFEKRNLLEELIPYLESALKLNSENPALQTKLIELYAKYD-PQKEIERLDNK--S-----NHYDI-E---------KV 75 (140)
T ss_pred HHHHHhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHHC-HHHHHHHHHhc--c-----ccCCH-H---------HH
Confidence 334455678889999999999998888888999999998653 44455554420 0 11122 1 25
Q ss_pred HHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHHHHHHHh
Q 008887 456 GVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQLEN 533 (550)
Q Consensus 456 g~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~l~~ 533 (550)
+..+.+.+.++++...+.+.-... ++ +-.+....++.+.|++++++ .++++.|..+.+
T Consensus 76 ~~~c~~~~l~~~~~~l~~k~~~~~------------~A---l~~~l~~~~d~~~a~~~~~~-----~~~~~lw~~~~~ 133 (140)
T smart00299 76 GKLCEKAKLYEEAVELYKKDGNFK------------DA---IVTLIEHLGNYEKAIEYFVK-----QNNPELWAEVLK 133 (140)
T ss_pred HHHHHHcCcHHHHHHHHHhhcCHH------------HH---HHHHHHcccCHHHHHHHHHh-----CCCHHHHHHHHH
Confidence 556677788888888887631110 11 11222333788888888765 345666665544
No 436
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=54.93 E-value=88 Score=31.58 Aligned_cols=101 Identities=17% Similarity=0.214 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHHcCCCCChHHHHHHHHhhCC------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChh
Q 008887 370 KELIALSVKFLSKGDKERPIPLLQLALNKEP------DNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPE 443 (550)
Q Consensus 370 ~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p------~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~ 443 (550)
++..+.|..|.+-||.+.|++.+.+..+..- +-.-+...+|..|....=..+.++-.+..++. .-+..
T Consensus 105 ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~-----GgDWe- 178 (393)
T KOG0687|consen 105 EAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEE-----GGDWE- 178 (393)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHh-----CCChh-
Confidence 3556899999999999999999999887542 22334456676665544444444444444444 11111
Q ss_pred hHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCC
Q 008887 444 AIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLK 479 (550)
Q Consensus 444 ~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~ 479 (550)
.... .-..-|.......++++|..+|-.++...
T Consensus 179 RrNR---lKvY~Gly~msvR~Fk~Aa~Lfld~vsTF 211 (393)
T KOG0687|consen 179 RRNR---LKVYQGLYCMSVRNFKEAADLFLDSVSTF 211 (393)
T ss_pred hhhh---HHHHHHHHHHHHHhHHHHHHHHHHHcccc
Confidence 1111 22245667777889999999998877654
No 437
>PF13041 PPR_2: PPR repeat family
Probab=53.73 E-value=45 Score=22.97 Aligned_cols=29 Identities=10% Similarity=0.076 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHhcCC
Q 008887 451 ASQWSGVACIRQEKWEEGIAHLERIGNLK 479 (550)
Q Consensus 451 a~~~lg~~~~~~g~~~eA~~~~~~al~~~ 479 (550)
.|..+-..+.+.|++++|.+.|++..+..
T Consensus 5 ~yn~li~~~~~~~~~~~a~~l~~~M~~~g 33 (50)
T PF13041_consen 5 TYNTLISGYCKAGKFEEALKLFKEMKKRG 33 (50)
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHHcC
Confidence 56678888999999999999999988764
No 438
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=53.38 E-value=62 Score=28.29 Aligned_cols=62 Identities=24% Similarity=0.261 Sum_probs=43.3
Q ss_pred HHHHHHHHHH-HcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 008887 371 ELIALSVKFL-SKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISK 432 (550)
Q Consensus 371 ~l~~la~~~~-~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l 432 (550)
+.+++|...+ .+|+.|+-.+.+....+.+.-+++.+..+|.+|.+.|+..+|-+.+++|-+.
T Consensus 87 e~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek 149 (161)
T PF09205_consen 87 EYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEK 149 (161)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 4557777554 4566666666777766666778999999999999999999999999999776
No 439
>PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway. To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. Trs120 is a subunit specific to the TRAPP II complex [] along with Trs65p and Trs130p(TRAPPC10). It is suggested that Trs120p is required for the stability of the Trs130p subunit, suggesting that these two proteins might interact in some way []. It is likely that there is a complex function for TRAPP II in multiple pathways [].
Probab=53.15 E-value=1.3e+02 Score=36.70 Aligned_cols=65 Identities=15% Similarity=0.131 Sum_probs=44.5
Q ss_pred cCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcC--------------------CHHHHHHHHHHHHHcCC
Q 008887 463 EKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVG--------------------RNAEAEKYLRLAAAHNP 522 (550)
Q Consensus 463 g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g--------------------~~~eA~~~l~~al~~~p 522 (550)
..+++++.+|.++.... ++.....-+.++...+++.+.... ...++.+.+.+++..+.
T Consensus 359 ~~~~~~l~~Y~~~~~~~--~~~~p~lv~~E~~lr~~~~l~~~~~~~~l~~iV~~~~~~~~~~~~~~eI~~~l~~~~~~~l 436 (1185)
T PF08626_consen 359 DLYEKALSLYSRSTNDT--SEYVPQLVYSEACLRFARFLVAQHLSDNLDHIVKRPLTPTPNISSRSEIAEFLFKAFPLQL 436 (1185)
T ss_pred HHHHHHHHHHHHhhccc--cccCcchHHHHHHHHHHHHHHHhhcccchhhhhccccccccCCCCHHHHHHHHHHhhhhhh
Confidence 35789999999987542 222222235677888888887777 78889999999888765
Q ss_pred CcHHHHH
Q 008887 523 QYNELLE 529 (550)
Q Consensus 523 ~~~~~~~ 529 (550)
..-....
T Consensus 437 ~~l~~~d 443 (1185)
T PF08626_consen 437 KDLSVED 443 (1185)
T ss_pred hhCCHHH
Confidence 4333333
No 440
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=52.88 E-value=1.1e+02 Score=34.81 Aligned_cols=127 Identities=11% Similarity=-0.030 Sum_probs=80.4
Q ss_pred CCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHHhc
Q 008887 384 DKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQE 463 (550)
Q Consensus 384 ~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~g 463 (550)
..++-+..++.-+..++.+..++..|-.++.+.|++++-...-++.-++ .|..+... .-|..--......+
T Consensus 94 ~~~~ei~t~~ee~ai~~y~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~-----~pl~~~lW----l~Wl~d~~~mt~s~ 164 (881)
T KOG0128|consen 94 GGNQEIRTLEEELAINSYKYAQMVQLIGLLRKLGDLEKLRQARLEMSEI-----APLPPHLW----LEWLKDELSMTQSE 164 (881)
T ss_pred cchhHHHHHHHHhcccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHh-----cCCChHHH----HHHHHHHHhhccCc
Confidence 3344456666667788888888999999999999999877776677666 66665221 11111112223347
Q ss_pred CHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 008887 464 KWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHN 521 (550)
Q Consensus 464 ~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~ 521 (550)
+..++.+.|++++.. -.++..+..+....+..+..+...++++.-+..+.+++..-
T Consensus 165 ~~~~v~~~~ekal~d--y~~v~iw~e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s~ 220 (881)
T KOG0128|consen 165 ERKEVEELFEKALGD--YNSVPIWEEVVNYLVGFGNVAKKSEDYKKERSVFERALRSL 220 (881)
T ss_pred chhHHHHHHHHHhcc--cccchHHHHHHHHHHhccccccccccchhhhHHHHHHHhhh
Confidence 888888999998876 44552333333333333444455567788888888887643
No 441
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=52.88 E-value=1.2e+02 Score=33.17 Aligned_cols=106 Identities=19% Similarity=0.060 Sum_probs=61.4
Q ss_pred HHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHHhcCHHHHHH
Q 008887 391 LLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIA 470 (550)
Q Consensus 391 ~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~ 470 (550)
..++||+..++.. - .-.+..+.|+++.|.+...++-.. . =|..||.+....|++..|.+
T Consensus 629 ~~e~AL~~s~D~d-~---rFelal~lgrl~iA~~la~e~~s~-----------~------Kw~~Lg~~al~~~~l~lA~E 687 (794)
T KOG0276|consen 629 MKEQALELSTDPD-Q---RFELALKLGRLDIAFDLAVEANSE-----------V------KWRQLGDAALSAGELPLASE 687 (794)
T ss_pred chHhhhhcCCChh-h---hhhhhhhcCcHHHHHHHHHhhcch-----------H------HHHHHHHHHhhcccchhHHH
Confidence 3455555554432 2 334456788999888766555222 1 34579999999999999999
Q ss_pred HHHHHhcCCC----CCCcccccc--------chhHHHHHH-HHHHhcCCHHHHHHHHHHH
Q 008887 471 HLERIGNLKE----PEEPKSKAH--------YYDGLVVLA-SALCNVGRNAEAEKYLRLA 517 (550)
Q Consensus 471 ~~~~al~~~~----p~~~~~~~~--------~~~~~~~La-~~~~~~g~~~eA~~~l~~a 517 (550)
+|.++-+... .....++.. ......++| .||...|+++++.+.+.+.
T Consensus 688 C~~~a~d~~~LlLl~t~~g~~~~l~~la~~~~~~g~~N~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 688 CFLRARDLGSLLLLYTSSGNAEGLAVLASLAKKQGKNNLAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred HHHhhcchhhhhhhhhhcCChhHHHHHHHHHHhhcccchHHHHHHHcCCHHHHHHHHHhc
Confidence 9999765430 000000000 011122223 4567777788777776554
No 442
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=52.88 E-value=22 Score=21.30 Aligned_cols=28 Identities=18% Similarity=0.150 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 008887 405 ALILMGQTQLQKGLLEEAVEYLECAISK 432 (550)
Q Consensus 405 a~~~lg~~~~~~g~~~eA~~~~~~al~l 432 (550)
+|..+-..|.+.|++++|.+.|++-.+.
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~ 29 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRER 29 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHC
Confidence 3567788899999999999999876553
No 443
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=52.67 E-value=61 Score=28.30 Aligned_cols=55 Identities=22% Similarity=0.243 Sum_probs=37.9
Q ss_pred HHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 008887 458 ACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAH 520 (550)
Q Consensus 458 ~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~ 520 (550)
.+..+|+-|+=-+.+....+.+ ...+ ..+..+|.+|.+.|+..+|.+.++++-+.
T Consensus 95 ~lv~~~kkDqLdki~~~l~kn~-~~~p-------~~L~kia~Ay~klg~~r~~~ell~~ACek 149 (161)
T PF09205_consen 95 ILVKQGKKDQLDKIYNELKKNE-EINP-------EFLVKIANAYKKLGNTREANELLKEACEK 149 (161)
T ss_dssp HHHHTT-HHHHHHHHHHH------S-H-------HHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred HHHHhccHHHHHHHHHHHhhcc-CCCH-------HHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 3456777776666777766433 4445 89999999999999999999999988763
No 444
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=52.62 E-value=30 Score=21.09 Aligned_cols=28 Identities=25% Similarity=0.375 Sum_probs=23.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 008887 493 GLVVLASALCNVGRNAEAEKYLRLAAAH 520 (550)
Q Consensus 493 ~~~~La~~~~~~g~~~eA~~~l~~al~~ 520 (550)
.|..+-.+|.+.|+.++|.+.|++..+.
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~ 29 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLER 29 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 3567778899999999999999987653
No 445
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=52.10 E-value=2e+02 Score=29.93 Aligned_cols=19 Identities=26% Similarity=0.379 Sum_probs=15.2
Q ss_pred HHhcCHHHHHHHHHHHhcC
Q 008887 460 IRQEKWEEGIAHLERIGNL 478 (550)
Q Consensus 460 ~~~g~~~eA~~~~~~al~~ 478 (550)
..+|+|+.|+..+-+++++
T Consensus 257 ~~~~ry~da~~r~yR~~e~ 275 (380)
T TIGR02710 257 ATQGRYDDAAARLYRALEL 275 (380)
T ss_pred HHccCHHHHHHHHHHHHHH
Confidence 3789999999888777754
No 446
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=51.53 E-value=60 Score=30.01 Aligned_cols=50 Identities=30% Similarity=0.331 Sum_probs=40.3
Q ss_pred HHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCc
Q 008887 466 EEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQY 524 (550)
Q Consensus 466 ~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~ 524 (550)
+..++..++.++.. | ++ ..+..++.++...|+.+||.+..+++..+.|.+
T Consensus 128 ~~~~~~a~~~l~~~-P-~~-------~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP~~ 177 (193)
T PF11846_consen 128 EAYIEWAERLLRRR-P-DP-------NVYQRYALALALLGDPEEARQWLARARRLYPAD 177 (193)
T ss_pred HHHHHHHHHHHHhC-C-CH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcH
Confidence 44555666666664 4 34 788899999999999999999999999999943
No 447
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=51.23 E-value=1.4e+02 Score=32.14 Aligned_cols=97 Identities=10% Similarity=-0.115 Sum_probs=51.7
Q ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCC
Q 008887 400 PDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLK 479 (550)
Q Consensus 400 p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~ 479 (550)
|-+-.++..+-.++.+..++.--.....+.++. .+.. .+++.++.||.+. ..++-....++.++.+
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~---------~e~k----mal~el~q~y~en-~n~~l~~lWer~ve~d 128 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEY---------GESK----MALLELLQCYKEN-GNEQLYSLWERLVEYD 128 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHh---------cchH----HHHHHHHHHHHhc-CchhhHHHHHHHHHhc
Confidence 333344444444454444555455555555555 1111 1455566666665 4455666666666665
Q ss_pred CCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008887 480 EPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAA 519 (550)
Q Consensus 480 ~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~ 519 (550)
-++. ..-..|+..|.+ ++..++..+|.+++.
T Consensus 129 -fnDv-------v~~ReLa~~yEk-ik~sk~a~~f~Ka~y 159 (711)
T COG1747 129 -FNDV-------VIGRELADKYEK-IKKSKAAEFFGKALY 159 (711)
T ss_pred -chhH-------HHHHHHHHHHHH-hchhhHHHHHHHHHH
Confidence 4444 444555655555 666666666666553
No 448
>PRK11619 lytic murein transglycosylase; Provisional
Probab=50.14 E-value=2.6e+02 Score=31.45 Aligned_cols=131 Identities=12% Similarity=-0.042 Sum_probs=86.2
Q ss_pred HHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh--------hhcCCCC------Ch
Q 008887 377 VKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKL--------FLAGHPT------EP 442 (550)
Q Consensus 377 ~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~--------~~~~~p~------~~ 442 (550)
...+..++.+.+...+...-..........|++|.++...|+.++|..+|+++.... ...|.+. .+
T Consensus 320 r~Al~~~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~~~~fYG~LAa~~Lg~~~~~~~~~~~ 399 (644)
T PRK11619 320 RMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQQRGFYPMVAAQRLGEEYPLKIDKAP 399 (644)
T ss_pred HHHHHccCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcCCCcHHHHHHHHcCCCCCCCCCCCC
Confidence 344567777776666666433334567889999999999999999999998874321 1111110 00
Q ss_pred hhHHHHH-HHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008887 443 EAIDLLI-VASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLA 517 (550)
Q Consensus 443 ~~~~~l~-~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~a 517 (550)
.....+. .-....+..+...|+..+|...+..+++.. +. .-...++....+.|.++.|+....++
T Consensus 400 ~~~~~~~~~~~~~ra~~L~~~g~~~~a~~ew~~~~~~~---~~-------~~~~~la~~A~~~g~~~~ai~~~~~~ 465 (644)
T PRK11619 400 KPDSALTQGPEMARVRELMYWNMDNTARSEWANLVASR---SK-------TEQAQLARYAFNQQWWDLSVQATIAG 465 (644)
T ss_pred chhhhhccChHHHHHHHHHHCCCHHHHHHHHHHHHhcC---CH-------HHHHHHHHHHHHCCCHHHHHHHHhhc
Confidence 0000000 012345677888999999999998877653 12 45678888888999999998776654
No 449
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=49.99 E-value=1.8e+02 Score=29.54 Aligned_cols=102 Identities=18% Similarity=0.073 Sum_probs=61.3
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccc
Q 008887 411 QTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHY 490 (550)
Q Consensus 411 ~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~ 490 (550)
.+..+.+|.++|++++++.++.......|. .+.......|+++...|+.+++.+.++..-..- ..-..-..+.
T Consensus 83 ~~~~~~~D~~~al~~Le~i~~~~~~~~e~~------av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~l-d~~~~v~~~V 155 (380)
T KOG2908|consen 83 VVSEQISDKDEALEFLEKIIEKLKEYKEPD------AVIYILTEIARLKLEINDLKEIKKLLDDLKSML-DSLDGVTSNV 155 (380)
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHhhccch------hHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH-hcccCCChhh
Confidence 344466789999999999888753333331 122244568899999999999999887765421 1111111122
Q ss_pred hhHHHHHHHH-HHhcCCHHHHHHHHHHHHH
Q 008887 491 YDGLVVLASA-LCNVGRNAEAEKYLRLAAA 519 (550)
Q Consensus 491 ~~~~~~La~~-~~~~g~~~eA~~~l~~al~ 519 (550)
...+|.++.- |...|++..+....-+.+.
T Consensus 156 h~~fY~lssqYyk~~~d~a~yYr~~L~YL~ 185 (380)
T KOG2908|consen 156 HSSFYSLSSQYYKKIGDFASYYRHALLYLG 185 (380)
T ss_pred hhhHHHHHHHHHHHHHhHHHHHHHHHHHhc
Confidence 2455666654 4566777766655444443
No 450
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=49.83 E-value=47 Score=34.41 Aligned_cols=103 Identities=16% Similarity=0.098 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHcCCCCChHHHHHHHHhhCC---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHH
Q 008887 371 ELIALSVKFLSKGDKERPIPLLQLALNKEP---DNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDL 447 (550)
Q Consensus 371 ~l~~la~~~~~~g~~~~A~~~~~~aL~~~p---~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~ 447 (550)
.+.++|.-|...|+++.|++.|.++-...- +....+.++-.+-...|+|..-..+-.+|.+.. +-........
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~----~~~~~~~q~v 227 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTP----DANENLAQEV 227 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCc----hhhhhHHHhc
Confidence 445899999999999999999999654322 234667777788888999998777777765441 0000000000
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHhc
Q 008887 448 LIVASQWSGVACIRQEKWEEGIAHLERIGN 477 (550)
Q Consensus 448 l~~a~~~lg~~~~~~g~~~eA~~~~~~al~ 477 (550)
.....-..|.+...+++|+.|.++|-.+..
T Consensus 228 ~~kl~C~agLa~L~lkkyk~aa~~fL~~~~ 257 (466)
T KOG0686|consen 228 PAKLKCAAGLANLLLKKYKSAAKYFLLAEF 257 (466)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 001233467777788899999999976543
No 451
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=49.70 E-value=39 Score=29.78 Aligned_cols=47 Identities=19% Similarity=0.147 Sum_probs=37.1
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHHHHHHHhhHHHH
Q 008887 492 DGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQLENNDEEF 538 (550)
Q Consensus 492 ~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~l~~~~~~~ 538 (550)
+.....++.....|++.-|.+....++..+|++.+++..+.++.+..
T Consensus 71 d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~l 117 (141)
T PF14863_consen 71 DKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQL 117 (141)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHH
Confidence 56777788888999999999999999999999999888877765544
No 452
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=49.52 E-value=30 Score=32.04 Aligned_cols=44 Identities=23% Similarity=0.132 Sum_probs=36.6
Q ss_pred hHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 008887 388 PIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISK 432 (550)
Q Consensus 388 A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l 432 (550)
.++..++.++..| ++..+..++.++...|+.++|.+..+++...
T Consensus 130 ~~~~a~~~l~~~P-~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~l 173 (193)
T PF11846_consen 130 YIEWAERLLRRRP-DPNVYQRYALALALLGDPEEARQWLARARRL 173 (193)
T ss_pred HHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4455556666666 5788899999999999999999999999999
No 453
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=49.51 E-value=1.3e+02 Score=31.97 Aligned_cols=92 Identities=15% Similarity=0.162 Sum_probs=65.3
Q ss_pred HHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhH
Q 008887 414 LQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDG 493 (550)
Q Consensus 414 ~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~ 493 (550)
...||...|-+-...+++. .|.+|.. + .-.+.+....|+|+.+.+.+..+-..- .... .+
T Consensus 300 ~~~gd~~aas~~~~~~lr~-----~~~~p~~---i----~l~~~i~~~lg~ye~~~~~~s~~~~~~-~s~~-------~~ 359 (831)
T PRK15180 300 LADGDIIAASQQLFAALRN-----QQQDPVL---I----QLRSVIFSHLGYYEQAYQDISDVEKII-GTTD-------ST 359 (831)
T ss_pred hhccCHHHHHHHHHHHHHh-----CCCCchh---h----HHHHHHHHHhhhHHHHHHHhhchhhhh-cCCc-------hH
Confidence 3568888888888889888 7777722 1 236888999999999998875443332 1111 56
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcH
Q 008887 494 LVVLASALCNVGRNAEAEKYLRLAAAHNPQYN 525 (550)
Q Consensus 494 ~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~ 525 (550)
...+-+.+..+|++++|...-+-.+.-.-+++
T Consensus 360 ~~~~~r~~~~l~r~~~a~s~a~~~l~~eie~~ 391 (831)
T PRK15180 360 LRCRLRSLHGLARWREALSTAEMMLSNEIEDE 391 (831)
T ss_pred HHHHHHhhhchhhHHHHHHHHHHHhccccCCh
Confidence 66777788999999999988776665443333
No 454
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=49.16 E-value=36 Score=20.75 Aligned_cols=28 Identities=18% Similarity=0.228 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 008887 405 ALILMGQTQLQKGLLEEAVEYLECAISK 432 (550)
Q Consensus 405 a~~~lg~~~~~~g~~~eA~~~~~~al~l 432 (550)
.|..+-..|.+.|++++|.+.|++..+.
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~ 29 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLER 29 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 3567778899999999999999887554
No 455
>KOG4056 consensus Translocase of outer mitochondrial membrane complex, subunit TOM20 [Intracellular trafficking, secretion, and vesicular transport]
Probab=49.10 E-value=38 Score=29.42 Aligned_cols=53 Identities=23% Similarity=0.292 Sum_probs=43.5
Q ss_pred CCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHHHHHHHh
Q 008887 481 PEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQLEN 533 (550)
Q Consensus 481 p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~l~~ 533 (550)
+++++.....+.-...+|+.|...|+.+++..++..++.+.++-.+.+..+.+
T Consensus 71 ~~d~~~~E~~Fmqqv~lGE~L~~qg~~e~ga~h~~nAi~vcgqpaqLL~vlq~ 123 (143)
T KOG4056|consen 71 PSDAEEVEKFFMQQVQLGEELLAQGNEEEGAEHLANAIVVCGQPAQLLQVLQQ 123 (143)
T ss_pred CCCHHHHHHHHHHHHHhHHHHHHccCHHHHHHHHHHHHhhcCCHHHHHHHHHh
Confidence 45554445566777899999999999999999999999999998887776654
No 456
>PF10858 DUF2659: Protein of unknown function (DUF2659); InterPro: IPR022588 This bacterial family of proteins has no known function.
Probab=47.84 E-value=2.2e+02 Score=25.89 Aligned_cols=102 Identities=10% Similarity=-0.022 Sum_probs=67.0
Q ss_pred HHHHHHHHcCCCCChHHHHHHHHhh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHH
Q 008887 374 ALSVKFLSKGDKERPIPLLQLALNK--EPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVA 451 (550)
Q Consensus 374 ~la~~~~~~g~~~~A~~~~~~aL~~--~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a 451 (550)
++...-...|+|.+|.+++.+.++. +.+...+|..++.+.+...|-.--.+.-++..+....-.+|.-|-+ ..+
T Consensus 98 eqva~kis~~~~~eaK~LlnkIi~nk~YSeistsYaRi~wc~~vidD~nl~i~dk~kL~kyL~yfdd~~kPFW----atA 173 (220)
T PF10858_consen 98 EQVAIKISEKKYSEAKQLLNKIIENKEYSEISTSYARINWCCMVIDDQNLNIQDKEKLIKYLNYFDDEKKPFW----ATA 173 (220)
T ss_pred HHHHHHHhhcchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHheecccccChhhHHHHHHHHhhccCCCCchH----HHH
Confidence 5555667889999999999999874 3455667777777776555433222222333333222224444433 335
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHhcCC
Q 008887 452 SQWSGVACIRQEKWEEGIAHLERIGNLK 479 (550)
Q Consensus 452 ~~~lg~~~~~~g~~~eA~~~~~~al~~~ 479 (550)
....+..-.+.|...+|++.++..+.-.
T Consensus 174 tI~kaiwdik~nm~~~aeknL~~l~~Sn 201 (220)
T PF10858_consen 174 TIIKAIWDIKNNMKNQAEKNLKNLLASN 201 (220)
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHhhc
Confidence 5567777889999999999999988764
No 457
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=47.70 E-value=2.8e+02 Score=27.13 Aligned_cols=23 Identities=30% Similarity=0.287 Sum_probs=10.0
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHH
Q 008887 492 DGLVVLASALCNVGRNAEAEKYL 514 (550)
Q Consensus 492 ~~~~~La~~~~~~g~~~eA~~~l 514 (550)
+.+..+|..|.+.|++.+|+.++
T Consensus 91 ~LH~~~a~~~~~e~~~~~A~~Hf 113 (260)
T PF04190_consen 91 ELHHLLAEKLWKEGNYYEAERHF 113 (260)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHH
T ss_pred HHHHHHHHHHHhhccHHHHHHHH
Confidence 44444444444444444444433
No 458
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=47.35 E-value=23 Score=27.44 Aligned_cols=20 Identities=35% Similarity=0.311 Sum_probs=15.9
Q ss_pred HHcCCHHHHHHHHHHHHHHh
Q 008887 414 LQKGLLEEAVEYLECAISKL 433 (550)
Q Consensus 414 ~~~g~~~eA~~~~~~al~l~ 433 (550)
-..|++++|+++|..+++..
T Consensus 17 D~~gny~eA~~lY~~ale~~ 36 (75)
T cd02680 17 DEKGNAEEAIELYTEAVELC 36 (75)
T ss_pred hHhhhHHHHHHHHHHHHHHH
Confidence 35688888888888888874
No 459
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=47.21 E-value=39 Score=26.23 Aligned_cols=29 Identities=21% Similarity=0.256 Sum_probs=20.4
Q ss_pred hHHHHHHHHHHHHcCCCCChHHHHHHHHh
Q 008887 369 PKELIALSVKFLSKGDKERPIPLLQLALN 397 (550)
Q Consensus 369 ~~~l~~la~~~~~~g~~~~A~~~~~~aL~ 397 (550)
+..+...|..+-..|++++|+.+|+++++
T Consensus 6 A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe 34 (75)
T cd02682 6 ARKYAINAVKAEKEGNAEDAITNYKKAIE 34 (75)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 33445677777788888877777777765
No 460
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=47.19 E-value=34 Score=26.55 Aligned_cols=29 Identities=21% Similarity=0.211 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Q 008887 405 ALILMGQTQLQKGLLEEAVEYLECAISKL 433 (550)
Q Consensus 405 a~~~lg~~~~~~g~~~eA~~~~~~al~l~ 433 (550)
.+...|.-+-+.|++++|+.+|+++++..
T Consensus 8 ~~a~~AVe~D~~gr~~eAi~~Y~~aIe~L 36 (75)
T cd02682 8 KYAINAVKAEKEGNAEDAITNYKKAIEVL 36 (75)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 34455666667788888888887777664
No 461
>TIGR00985 3a0801s04tom mitochondrial import receptor subunit translocase of outer membrane 20 kDa subunit.
Probab=47.06 E-value=79 Score=28.08 Aligned_cols=53 Identities=25% Similarity=0.305 Sum_probs=44.9
Q ss_pred CCCccccccchhHHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCCcHHHHHHHHh
Q 008887 481 PEEPKSKAHYYDGLVVLASALCNVG-RNAEAEKYLRLAAAHNPQYNELLEQLEN 533 (550)
Q Consensus 481 p~~~~~~~~~~~~~~~La~~~~~~g-~~~eA~~~l~~al~~~p~~~~~~~~l~~ 533 (550)
|+|......++.-...+|+.+...| +.++|..+|-+++.+.|+-.+.+..+.+
T Consensus 80 p~d~~e~E~~Fl~eV~~GE~L~~~g~~~~ega~hf~nAl~Vc~qP~~LL~iyq~ 133 (148)
T TIGR00985 80 PTDPSEKEAFFLQEVQLGEELMAQGTNVDEGAVHFYNALKVYPQPQQLLSIYQQ 133 (148)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 5666666667788889999999999 9999999999999999998887776654
No 462
>COG3014 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=46.57 E-value=2.3e+02 Score=28.95 Aligned_cols=59 Identities=10% Similarity=-0.032 Sum_probs=41.0
Q ss_pred HHHHHHHHcCCCCChHHHHHHHHh---hC---------------------------CCC---hHHHHHHHHHHHHcCCHH
Q 008887 374 ALSVKFLSKGDKERPIPLLQLALN---KE---------------------------PDN---INALILMGQTQLQKGLLE 420 (550)
Q Consensus 374 ~la~~~~~~g~~~~A~~~~~~aL~---~~---------------------------p~~---~~a~~~lg~~~~~~g~~~ 420 (550)
+.|..++..|||.+....+..+-. .+ |.. ...++.+|.-|+...|++
T Consensus 63 ~~Gl~a~~~~dya~S~~~ldAae~~~KqqqD~~~~S~~~A~~vGst~vNDNi~~Y~g~~YE~~~~n~YkaLNYm~~nD~~ 142 (449)
T COG3014 63 QNGLSALYARDYATSLGVLDAAEQRFKQQQDTQSASTRGAGYVGATMINDNVRAYGGNIYEGVLINYYKALNYMLLNDSA 142 (449)
T ss_pred hhhHHHHHhhhHHHhhhHHHHHHHHHhhhhhhheeccccccchhhhhhccchhhcCchhHHHHHHHHHHHhhHHHhcchh
Confidence 677788888888776655554433 11 111 234467888999999999
Q ss_pred HHHHHHHHHHHH
Q 008887 421 EAVEYLECAISK 432 (550)
Q Consensus 421 eA~~~~~~al~l 432 (550)
.|+-.++++.+.
T Consensus 143 ~ArVEfnRan~r 154 (449)
T COG3014 143 KARVEFNRANER 154 (449)
T ss_pred hhHHHHHHHHHH
Confidence 999988888777
No 463
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=45.91 E-value=51 Score=20.13 Aligned_cols=29 Identities=14% Similarity=0.086 Sum_probs=24.4
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 008887 492 DGLVVLASALCNVGRNAEAEKYLRLAAAH 520 (550)
Q Consensus 492 ~~~~~La~~~~~~g~~~eA~~~l~~al~~ 520 (550)
..|..+-.++.+.|+.++|.+.+++..+.
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~ 30 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQ 30 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 35778888999999999999999887653
No 464
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=45.66 E-value=4e+02 Score=28.36 Aligned_cols=61 Identities=8% Similarity=0.117 Sum_probs=43.1
Q ss_pred hHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 008887 369 PKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISK 432 (550)
Q Consensus 369 ~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l 432 (550)
++.++.....+...+|-++|+...++++...|. ...-++..|....|-++-..+|+++++.
T Consensus 302 ~evw~dys~Y~~~isd~q~al~tv~rg~~~sps---L~~~lse~yel~nd~e~v~~~fdk~~q~ 362 (660)
T COG5107 302 EEVWFDYSEYLIGISDKQKALKTVERGIEMSPS---LTMFLSEYYELVNDEEAVYGCFDKCTQD 362 (660)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHhcccCCCc---hheeHHHHHhhcccHHHHhhhHHHHHHH
Confidence 444445555556667777888887777765555 7778888888888888877777777644
No 465
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=45.22 E-value=1.4e+02 Score=30.74 Aligned_cols=45 Identities=29% Similarity=0.251 Sum_probs=40.9
Q ss_pred CCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008887 385 KERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECA 429 (550)
Q Consensus 385 ~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~a 429 (550)
.-+|+.+++.+++.+|.+......+..+|...|-.+.|.+.|+..
T Consensus 199 l~~Ai~lLE~~l~~s~~n~~~~LlLvrlY~~LG~~~~A~~~~~~L 243 (365)
T PF09797_consen 199 LLQAIALLEHALKKSPHNYQLKLLLVRLYSLLGAGSLALEHYESL 243 (365)
T ss_pred HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHhc
Confidence 336889999999999999999999999999999999999999654
No 466
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=44.60 E-value=2e+02 Score=24.61 Aligned_cols=115 Identities=11% Similarity=-0.006 Sum_probs=63.1
Q ss_pred HHHHHHHHhhCC---CChHHHHHHH----HHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHH
Q 008887 389 IPLLQLALNKEP---DNINALILMG----QTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIR 461 (550)
Q Consensus 389 ~~~~~~aL~~~p---~~~~a~~~lg----~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~ 461 (550)
.+.|++.++... |-.+.|...- ..+-..+.-..-...++++++.. ..++...++...+ .+-..|..
T Consensus 5 r~~~e~~i~~~~~~dDPL~~w~~yI~w~~~~~p~~~~~~~L~~lLer~~~~f--~~~~~Y~nD~Ryl-----kiWi~ya~ 77 (126)
T PF08311_consen 5 RQEFEEQIRSYEEGDDPLDPWLRYIKWIEENYPSGGKQSGLLELLERCIRKF--KDDERYKNDERYL-----KIWIKYAD 77 (126)
T ss_dssp HHHHHHHHHCCGGSS-CHHHHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHH--TTSGGGTT-HHHH-----HHHHHHHT
T ss_pred HHHHHHHHHHccCCCCChHHHHHHHHHHHHHCCCCCchhHHHHHHHHHHHHH--hhhHhhcCCHHHH-----HHHHHHHH
Confidence 345566665433 3334443322 22222345566677888888883 1122222222111 22223333
Q ss_pred hcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008887 462 QEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAA 518 (550)
Q Consensus 462 ~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al 518 (550)
.- +++.+.|....... -. ...+..|...|..+...|++++|.+.|+.++
T Consensus 78 ~~--~~~~~if~~l~~~~-IG-----~~~A~fY~~wA~~le~~~~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 78 LS--SDPREIFKFLYSKG-IG-----TKLALFYEEWAEFLEKRGNFKKADEIYQLGI 126 (126)
T ss_dssp TB--SHHHHHHHHHHHHT-TS-----TTBHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred Hc--cCHHHHHHHHHHcC-cc-----HHHHHHHHHHHHHHHHcCCHHHHHHHHHhhC
Confidence 32 37778877665532 11 1244788899999999999999999998864
No 467
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=44.44 E-value=3.4e+02 Score=28.42 Aligned_cols=129 Identities=12% Similarity=0.014 Sum_probs=85.8
Q ss_pred CCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCC--HHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHH
Q 008887 384 DKERPIPLLQLALNKEPDNINALILMGQTQLQKGL--LEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIR 461 (550)
Q Consensus 384 ~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~--~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~ 461 (550)
..++-+.+...+++.+|+...+|+.+..++.+.+. +..=++..+++++. +|.+-...++- .+..+.+-..
T Consensus 90 ~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~-----D~RNfh~W~YR---RfV~~~~~~~ 161 (421)
T KOG0529|consen 90 LLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQ-----DPRNFHAWHYR---RFVVEQAERS 161 (421)
T ss_pred hhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhc-----CcccccchHHH---HHHHHHHhcc
Confidence 56777889999999999999999999999997765 56778888999998 77665221111 1122333333
Q ss_pred hcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHH------hcCC------HHHHHHHHHHHHHcCCCcHHHH
Q 008887 462 QEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALC------NVGR------NAEAEKYLRLAAAHNPQYNELL 528 (550)
Q Consensus 462 ~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~------~~g~------~~eA~~~l~~al~~~p~~~~~~ 528 (550)
.....+-+++..+++..+ +.+- .+|.+...++. +.|+ ...-.+.-..++-.+|++..+|
T Consensus 162 ~~~~~~El~ftt~~I~~n-fSNY-------saWhyRs~lL~~l~~~~~~g~~~~~~~l~sEle~v~saiFTdp~DqS~W 232 (421)
T KOG0529|consen 162 RNLEKEELEFTTKLINDN-FSNY-------SAWHYRSLLLSTLHPKEADGNFMPKELLQSELEMVHSAIFTDPEDQSCW 232 (421)
T ss_pred cccchhHHHHHHHHHhcc-chhh-------hHHHHHHHHHHHhccccccCccCCHHHHHHHHHHHHHHHhcCcccccee
Confidence 334677788889988876 6554 67776665554 2231 1223344445666778887644
No 468
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=44.43 E-value=37 Score=26.36 Aligned_cols=19 Identities=21% Similarity=0.085 Sum_probs=14.5
Q ss_pred HhcCCHHHHHHHHHHHHHc
Q 008887 502 CNVGRNAEAEKYLRLAAAH 520 (550)
Q Consensus 502 ~~~g~~~eA~~~l~~al~~ 520 (550)
-..|++++|..+|..+++.
T Consensus 17 D~~gny~eA~~lY~~ale~ 35 (75)
T cd02680 17 DEKGNAEEAIELYTEAVEL 35 (75)
T ss_pred hHhhhHHHHHHHHHHHHHH
Confidence 3467888888888887764
No 469
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=44.15 E-value=88 Score=30.06 Aligned_cols=99 Identities=15% Similarity=0.124 Sum_probs=55.5
Q ss_pred HHHcCCCCChHHHHHHHHhhC---CCC---------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHH
Q 008887 379 FLSKGDKERPIPLLQLALNKE---PDN---------INALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAID 446 (550)
Q Consensus 379 ~~~~g~~~~A~~~~~~aL~~~---p~~---------~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~ 446 (550)
.+..|+++.|++..+-|++.+ |+. ++-...-+......|+.-+. ...+....+. .+- .....
T Consensus 93 ~~D~Gd~~~AL~ia~yAI~~~l~~Pd~f~R~~~t~vaeev~~~A~~~~~ag~~~e~-~~~~~~~~l~---~~~--dmpd~ 166 (230)
T PHA02537 93 RFDIGDFDGALEIAEYALEHGLTMPDQFRRTLANFVAEEVANAALKAASAGESVEP-YFLRVFLDLT---TEW--DMPDE 166 (230)
T ss_pred eeeccCHHHHHHHHHHHHHcCCCCCccccCCchHHHHHHHHHHHHHHHHcCCCCCh-HHHHHHHHHH---hcC--CCChH
Confidence 367789999999999999965 332 11223334444455542211 1122222221 011 11122
Q ss_pred HHHHHHHHHHHHHH---------HhcCHHHHHHHHHHHhcCCCCCCc
Q 008887 447 LLIVASQWSGVACI---------RQEKWEEGIAHLERIGNLKEPEEP 484 (550)
Q Consensus 447 ~l~~a~~~lg~~~~---------~~g~~~eA~~~~~~al~~~~p~~~ 484 (550)
.....+-.+|..+. ..++..+|+.++++|++++ ++..
T Consensus 167 vrAKl~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~-~k~G 212 (230)
T PHA02537 167 VRAKLYKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLN-DKCG 212 (230)
T ss_pred HHHHHHHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhC-CCCC
Confidence 22234455677773 4568889999999999997 6654
No 470
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=42.71 E-value=1.4e+02 Score=22.15 Aligned_cols=56 Identities=21% Similarity=0.307 Sum_probs=38.1
Q ss_pred HHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHH--HHHHhcCCHHHHHHHH
Q 008887 455 SGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLA--SALCNVGRNAEAEKYL 514 (550)
Q Consensus 455 lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La--~~~~~~g~~~eA~~~l 514 (550)
.|..+...|+|=+|-+.++..-... +.+ .......+..++ ....+.|+.+.|...+
T Consensus 5 ~~~~l~n~g~f~EaHEvlE~~W~~~-~~~---~~~~lqglIq~A~a~~h~~~gn~~gA~~l~ 62 (62)
T PF03745_consen 5 EGIELFNAGDFFEAHEVLEELWKAA-PGP---ERDFLQGLIQLAVALYHLRRGNPRGARRLL 62 (62)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHCCCT--CC---HHHHHHHHHHHHHHHHHHHCTSHHHHHHHH
T ss_pred HHHHHHcCCCHHHhHHHHHHHHHHC-Ccc---hHHHHHHHHHHHHHHHHHHhCCHHHHHHhC
Confidence 5777889999999999999988754 333 223334444444 4567889999888654
No 471
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=42.10 E-value=3.8e+02 Score=28.56 Aligned_cols=56 Identities=18% Similarity=0.227 Sum_probs=47.4
Q ss_pred HHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 008887 377 VKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISK 432 (550)
Q Consensus 377 ~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l 432 (550)
..|...|++..|-..|+-.+...|+++..-+..-..+...+|-+.|...|+++++.
T Consensus 440 ~E~~~~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~inde~naraLFetsv~r 495 (660)
T COG5107 440 IEYYATGDRATAYNIFELGLLKFPDSTLYKEKYLLFLIRINDEENARALFETSVER 495 (660)
T ss_pred HHHHhcCCcchHHHHHHHHHHhCCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHH
Confidence 36778889999999999999999988877777777778889999999999988877
No 472
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=41.97 E-value=81 Score=26.99 Aligned_cols=46 Identities=26% Similarity=0.264 Sum_probs=38.1
Q ss_pred ccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHHHHHHHh
Q 008887 488 AHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQLEN 533 (550)
Q Consensus 488 ~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~l~~ 533 (550)
..++.-...+|+.+...|++++|..+|-+++.+.|+-.+.+..+.+
T Consensus 60 e~~Fl~qV~lGE~L~~~G~~~~aa~hf~nAl~V~~qP~~LL~i~q~ 105 (121)
T PF02064_consen 60 ERFFLQQVQLGEQLLAQGDYEEAAEHFYNALKVCPQPAELLQIYQK 105 (121)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTSSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 3455667789999999999999999999999999998887776654
No 473
>PF10938 YfdX: YfdX protein; InterPro: IPR021236 YfdX is a protein found in Proteobacteria of unknown function. The protein coding for this gene is regulated by EvgA in Escherichia coli []. ; PDB: 3DZA_C.
Probab=41.73 E-value=1.4e+02 Score=26.74 Aligned_cols=69 Identities=17% Similarity=0.076 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008887 451 ASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAA 519 (550)
Q Consensus 451 a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~ 519 (550)
.....+.-..+.|+..+|.+.++-+-.--.-................+..+...|++++|...+..++.
T Consensus 77 ~ai~~a~~~l~~g~~~~A~~~L~~~~~ei~~~~~~lPL~~~~~av~~A~~ll~~~k~~eA~~aL~~A~~ 145 (155)
T PF10938_consen 77 AAIKTANELLKKGDKQAAREILKLAGSEIDITTALLPLAQTPAAVKQAAALLDEGKYYEANAALKQALD 145 (155)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHTT-EEEEEEEEEEHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhcccceeeeeeCCHHhhHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 445577888999999999999987432110000000012345666888889999999999999998874
No 474
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=40.78 E-value=51 Score=33.53 Aligned_cols=65 Identities=23% Similarity=0.111 Sum_probs=58.3
Q ss_pred HHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChh
Q 008887 374 ALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPE 443 (550)
Q Consensus 374 ~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~ 443 (550)
+++..-+..+.+..|+..-..+++.++....+++-.+..+....++++|++.++.+... .|.+..
T Consensus 280 n~~~~~lk~~~~~~a~~~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~-----~p~d~~ 344 (372)
T KOG0546|consen 280 NLAAVGLKVKGRGGARFRTNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQK-----APNDKA 344 (372)
T ss_pred chHHhcccccCCCcceeccccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhcc-----CcchHH
Confidence 57777888899999999988889899999999999999999999999999999999888 777663
No 475
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=40.20 E-value=2.1e+02 Score=28.53 Aligned_cols=101 Identities=13% Similarity=0.044 Sum_probs=70.9
Q ss_pred HHHHHHHHcCCCCChHHHHHHHHh---hC---CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHH
Q 008887 374 ALSVKFLSKGDKERPIPLLQLALN---KE---PDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDL 447 (550)
Q Consensus 374 ~la~~~~~~g~~~~A~~~~~~aL~---~~---p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~ 447 (550)
.+...++..|+|.+|+.+....+. .. +.-...+..-..+|...++..++...+..|-..+-.+-.|..-
T Consensus 130 Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpql----- 204 (421)
T COG5159 130 KLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQL----- 204 (421)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHH-----
Confidence 677889999999999998877765 22 3445677777889999999999888887776553111122211
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCC
Q 008887 448 LIVASQWSGVACIRQEKWEEGIAHLERIGNLK 479 (550)
Q Consensus 448 l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~ 479 (550)
....-..-|..++...+|.-|-.+|-++++-.
T Consensus 205 qa~lDL~sGIlhcdd~dyktA~SYF~Ea~Egf 236 (421)
T COG5159 205 QAQLDLLSGILHCDDRDYKTASSYFIEALEGF 236 (421)
T ss_pred HHHHHHhccceeeccccchhHHHHHHHHHhcc
Confidence 11111223677778889999999999998864
No 476
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=39.87 E-value=3.2e+02 Score=25.54 Aligned_cols=104 Identities=17% Similarity=0.113 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCc
Q 008887 405 ALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEP 484 (550)
Q Consensus 405 a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~ 484 (550)
-+...+....+.|++++|.+.++++.+.......--.+ .+ ..++-|.|-..+..|-+|...+.-.-...-|...
T Consensus 31 r~s~~aI~~~H~~~~eeA~~~l~~a~~~v~~Lk~~l~~-~p-----el~~ag~~~~a~QEyvEA~~l~~~l~~~~~ps~~ 104 (204)
T COG2178 31 RLSGEAIFLLHRGDFEEAEKKLKKASEAVEKLKRLLAG-FP-----ELYFAGFVTTALQEYVEATLLYSILKDGRLPSPE 104 (204)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhh-hH-----HHHHHHhhcchHHHHHHHHHHHHHHhcCCCCCHH
Confidence 34556777789999999999998887663111100011 11 2344567777778899999888765544312111
Q ss_pred cccccchhHHHHHH--H----------HHHhcCCHHHHHHHHHH
Q 008887 485 KSKAHYYDGLVVLA--S----------ALCNVGRNAEAEKYLRL 516 (550)
Q Consensus 485 ~~~~~~~~~~~~La--~----------~~~~~g~~~eA~~~l~~ 516 (550)
.- ......|.+| . -....|+.++|.+.++-
T Consensus 105 EL--~V~~~~YilGl~D~vGELrR~~le~l~~~~~~~Ae~~~~~ 146 (204)
T COG2178 105 EL--GVPPIAYILGLADAVGELRRHVLELLRKGSFEEAERFLKF 146 (204)
T ss_pred Hc--CCCHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 11 1111222222 2 23567888999877654
No 477
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=39.67 E-value=70 Score=23.99 Aligned_cols=27 Identities=33% Similarity=0.271 Sum_probs=20.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 008887 406 LILMGQTQLQKGLLEEAVEYLECAISK 432 (550)
Q Consensus 406 ~~~lg~~~~~~g~~~eA~~~~~~al~l 432 (550)
+...|.-+-..|++++|+++|.++++.
T Consensus 8 ~~~~Av~~D~~g~~~~A~~~Y~~ai~~ 34 (69)
T PF04212_consen 8 LIKKAVEADEAGNYEEALELYKEAIEY 34 (69)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 344556666778888888888888776
No 478
>PLN02294 cytochrome c oxidase subunit Vb
Probab=38.66 E-value=65 Score=29.12 Aligned_cols=11 Identities=9% Similarity=0.265 Sum_probs=8.8
Q ss_pred HHHHHHHhhhc
Q 008887 4 AKLLLLQLRRC 14 (550)
Q Consensus 4 ~~~~~~~~~~~ 14 (550)
||++.++||+-
T Consensus 3 Rr~~ss~L~~l 13 (174)
T PLN02294 3 RRIVSSHLKTL 13 (174)
T ss_pred hhHHHHHHHHH
Confidence 77888899884
No 479
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=36.74 E-value=2.3e+02 Score=23.42 Aligned_cols=42 Identities=17% Similarity=0.175 Sum_probs=36.7
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHHHHHHHh
Q 008887 492 DGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQLEN 533 (550)
Q Consensus 492 ~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~l~~ 533 (550)
-.+..||.+|...|+.+.|.+.|+.--++-|+...+..-|-+
T Consensus 73 G~HAhLGlLys~~G~~e~a~~eFetEKalFPES~~fmDFLmk 114 (121)
T COG4259 73 GYHAHLGLLYSNSGKDEQAVREFETEKALFPESGVFMDFLMK 114 (121)
T ss_pred cHHHHHHHHHhhcCChHHHHHHHHHhhhhCccchhHHHHHHH
Confidence 678899999999999999999999988888988877766644
No 480
>smart00671 SEL1 Sel1-like repeats. These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
Probab=36.12 E-value=74 Score=19.73 Aligned_cols=29 Identities=31% Similarity=0.227 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHc----CCHHHHHHHHHHHHHH
Q 008887 404 NALILMGQTQLQK----GLLEEAVEYLECAISK 432 (550)
Q Consensus 404 ~a~~~lg~~~~~~----g~~~eA~~~~~~al~l 432 (550)
.+.+.+|..|..- .+.++|..+++++.+.
T Consensus 2 ~a~~~lg~~~~~G~g~~~d~~~A~~~~~~Aa~~ 34 (36)
T smart00671 2 EAQYNLGQMYEYGLGVKKDLEKALEYYKKAAEL 34 (36)
T ss_pred HHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHc
Confidence 4567777777642 3788888888888654
No 481
>TIGR00985 3a0801s04tom mitochondrial import receptor subunit translocase of outer membrane 20 kDa subunit.
Probab=36.02 E-value=1.9e+02 Score=25.73 Aligned_cols=43 Identities=19% Similarity=0.278 Sum_probs=34.1
Q ss_pred CCCCChhhHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHhcCC
Q 008887 437 GHPTEPEAIDLLIVASQWSGVACIRQE-KWEEGIAHLERIGNLK 479 (550)
Q Consensus 437 ~~p~~~~~~~~l~~a~~~lg~~~~~~g-~~~eA~~~~~~al~~~ 479 (550)
.+|++.+..+....-...+|..+...| +.++|..+|-+|+...
T Consensus 78 p~p~d~~e~E~~Fl~eV~~GE~L~~~g~~~~ega~hf~nAl~Vc 121 (148)
T TIGR00985 78 PDPTDPSEKEAFFLQEVQLGEELMAQGTNVDEGAVHFYNALKVY 121 (148)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhC
Confidence 356666555555556677899999999 9999999999999986
No 482
>PHA01081 putative minor coat protein
Probab=35.95 E-value=78 Score=25.94 Aligned_cols=26 Identities=27% Similarity=0.471 Sum_probs=21.7
Q ss_pred hhcCChHHHHHHHHHHHHHHH--HHhHH
Q 008887 116 DFTGFPWWTIIVSSTVALRIA--LLPLI 141 (550)
Q Consensus 116 ~~~glpw~~~I~~~t~~vRl~--~lPl~ 141 (550)
...|++=.++||+.++++|+. ++|++
T Consensus 73 ~~iGlgq~lgII~aAI~iRl~LQLIPFv 100 (104)
T PHA01081 73 SAIGIPQCLGMIMSAIIVRILLQLVPFT 100 (104)
T ss_pred HHcCchhhHHHHHHHHHHHHHHhhccee
Confidence 447888889999999999997 47764
No 483
>PF04348 LppC: LppC putative lipoprotein; InterPro: IPR007443 This entry includes several bacterial outer membrane antigens, whose molecular function is unknown.; PDB: 3CKM_A.
Probab=35.28 E-value=13 Score=40.80 Aligned_cols=97 Identities=18% Similarity=0.076 Sum_probs=0.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCcc
Q 008887 406 LILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPK 485 (550)
Q Consensus 406 ~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~ 485 (550)
+..-+..+...|+++.|...+.+.-... -++... . ......+.+...+|++++|++.+.. .... .-.
T Consensus 27 ~L~Aa~a~l~~g~~~~A~~ll~~l~~~~---L~~~q~-~-----~~~Ll~A~lal~~~~~~~Al~~L~~-~~~~-~l~-- 93 (536)
T PF04348_consen 27 LLLAARALLQEGDWAQAQALLNQLDPQQ---LSPSQQ-A-----RYQLLRARLALAQGDPEQALSLLNA-QDLW-QLP-- 93 (536)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHhCCCHHHHHHHHHhccccc---CChHHH-H-----HHHHHHHHHHHhcCCHHHHHHHhcc-CCcc-cCC--
Confidence 3445566666677777766665543110 012111 0 1222355666666777777776653 1111 000
Q ss_pred ccccchhHHHHHHHHHHhcCCHHHHHHHHHH
Q 008887 486 SKAHYYDGLVVLASALCNVGRNAEAEKYLRL 516 (550)
Q Consensus 486 ~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~ 516 (550)
.......+...|.+|...|++-+|.+.+-+
T Consensus 94 -~~~~~~~~~l~A~a~~~~~~~l~Aa~~~i~ 123 (536)
T PF04348_consen 94 -PEQQARYHQLRAQAYEQQGDPLAAARERIA 123 (536)
T ss_dssp -------------------------------
T ss_pred -HHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 111224455566666666666666655443
No 484
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=33.82 E-value=91 Score=24.24 Aligned_cols=27 Identities=30% Similarity=0.249 Sum_probs=19.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHh
Q 008887 407 ILMGQTQLQKGLLEEAVEYLECAISKL 433 (550)
Q Consensus 407 ~~lg~~~~~~g~~~eA~~~~~~al~l~ 433 (550)
...|.-+-..|+|++|+.+|.++++..
T Consensus 10 a~~Ave~D~~g~y~eA~~~Y~~aie~l 36 (76)
T cd02681 10 ARLAVQRDQEGRYSEAVFYYKEAAQLL 36 (76)
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 344555557788888888888888773
No 485
>PF08238 Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like repeats are tetratricopeptide repeat sequences originally identified in a Caenorhabditis elegans receptor molecule which is a key negative regulator of the Notch pathway []. Mammalian homologues have since been identified although these mainly pancreatic proteins have yet to have a function assigned.; PDB: 2XM6_A 3RJV_A 1OUV_A 1KLX_A.
Probab=33.66 E-value=83 Score=19.97 Aligned_cols=30 Identities=20% Similarity=0.155 Sum_probs=19.2
Q ss_pred hHHHHHHH--HHHHHcC-----CHHHHHHHHHHHHHH
Q 008887 403 INALILMG--QTQLQKG-----LLEEAVEYLECAISK 432 (550)
Q Consensus 403 ~~a~~~lg--~~~~~~g-----~~~eA~~~~~~al~l 432 (550)
+++.+.+| ..|..-. +.++|+++|+++.+.
T Consensus 1 a~A~~~lg~~~~~~~g~~g~~~d~~~A~~~~~~Aa~~ 37 (39)
T PF08238_consen 1 AEAQYNLGMYYMYYNGKGGVPKDYEKAFKWYEKAAEQ 37 (39)
T ss_dssp HHHHHHHHHHHHHHHTSTSSCHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHhhhhccCCccccccchHHHHHHHHHc
Confidence 35667777 4444332 467888888888665
No 486
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=33.64 E-value=87 Score=23.46 Aligned_cols=26 Identities=23% Similarity=0.165 Sum_probs=17.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008887 494 LVVLASALCNVGRNAEAEKYLRLAAA 519 (550)
Q Consensus 494 ~~~La~~~~~~g~~~eA~~~l~~al~ 519 (550)
+...|.-+.+.|++++|+.+|.++++
T Consensus 8 ~~~~Av~~D~~g~~~~A~~~Y~~ai~ 33 (69)
T PF04212_consen 8 LIKKAVEADEAGNYEEALELYKEAIE 33 (69)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34445555667888888888877654
No 487
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=33.30 E-value=2.7e+02 Score=30.37 Aligned_cols=26 Identities=19% Similarity=-0.012 Sum_probs=13.6
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008887 492 DGLVVLASALCNVGRNAEAEKYLRLA 517 (550)
Q Consensus 492 ~~~~~La~~~~~~g~~~eA~~~l~~a 517 (550)
..|..+|..|++.+++.+|+.++.++
T Consensus 319 YPYty~gg~~yR~~~~~eA~~~Wa~a 344 (618)
T PF05053_consen 319 YPYTYLGGYYYRHKRYREALRSWAEA 344 (618)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred ccceehhhHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555555544
No 488
>KOG4459 consensus Membrane-associated proteoglycan Leprecan [Function unknown]
Probab=33.25 E-value=2.8e+02 Score=29.33 Aligned_cols=43 Identities=19% Similarity=0.124 Sum_probs=38.1
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHHHHHHHhh
Q 008887 492 DGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQLENN 534 (550)
Q Consensus 492 ~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~l~~~ 534 (550)
..+..|=.+|++.|+..+|++.-...+--+|++.....++..+
T Consensus 134 ~py~YL~~ay~k~~~l~kAv~aa~tflv~~Pdde~ik~~ldyY 176 (471)
T KOG4459|consen 134 LPYQYLQFAYFKVGELEKAVAAAHTFLVANPDDEDIKQNLDYY 176 (471)
T ss_pred hHHHHHHHHHHHhhhHHHHHHhcceeeecCCcHHHHHHHHHHH
Confidence 4577888899999999999999988999999999998888764
No 489
>COG5600 Transcription-associated recombination protein [DNA replication, recombination, and repair]
Probab=33.04 E-value=4.9e+02 Score=26.95 Aligned_cols=70 Identities=14% Similarity=-0.066 Sum_probs=49.9
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHhcCCCCCCc-cccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 008887 454 WSGVACIRQEKWEEGIAHLERIGNLKEPEEP-KSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQ 523 (550)
Q Consensus 454 ~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~-~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~ 523 (550)
-+...|.+.++.+-+...++......-|+-. ....++...+|.+|.+|.-+.++.+|...+++++...|+
T Consensus 182 lL~~iY~Rl~~~~l~~n~lka~~~vs~~Di~~~~~sq~v~f~YYLG~~~l~~en~heA~~~L~~aFl~c~~ 252 (413)
T COG5600 182 LLFQIYLRLGRFKLCENFLKASKEVSMPDISEYQKSQVVVFHYYLGIYYLLNENFHEAFLHLNEAFLQCPW 252 (413)
T ss_pred HHHHHHHHhccHHHHHHHHHhcccccccccchhhhcceeehhhHHHHHHHHHHhHHHHHHHHHHHHHhChh
Confidence 3556788999988777666543221102111 122345678999999999999999999999999998887
No 490
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=32.91 E-value=1.5e+02 Score=33.73 Aligned_cols=29 Identities=21% Similarity=0.117 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 008887 404 NALILMGQTQLQKGLLEEAVEYLECAISK 432 (550)
Q Consensus 404 ~a~~~lg~~~~~~g~~~eA~~~~~~al~l 432 (550)
+.+...|.-++++|++++|...|-+++..
T Consensus 369 ~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~ 397 (933)
T KOG2114|consen 369 EIHRKYGDYLYGKGDFDEATDQYIETIGF 397 (933)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHccc
Confidence 45556677777777777777776666544
No 491
>KOG4563 consensus Cell cycle-regulated histone H1-binding protein [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=32.05 E-value=47 Score=33.88 Aligned_cols=60 Identities=8% Similarity=0.166 Sum_probs=49.4
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHH
Q 008887 454 WSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKY 513 (550)
Q Consensus 454 ~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~ 513 (550)
..|+-.+.++++++|...|..|..+........+...+.+++.+|..+++.++.+.++-.
T Consensus 46 ~~G~~~~~~~d~~~Avda~s~A~~l~~ei~Ge~~~e~~eal~~YGkslLela~~e~~VL~ 105 (400)
T KOG4563|consen 46 QAGRRALCNNDIDKAVDALSEATELSDEIYGEKHLETFEALFLYGKSLLELAKEESQVLG 105 (400)
T ss_pred HhhhHHHhcccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 478888899999999999999998864455566677889999999999999887776643
No 492
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=31.85 E-value=78 Score=24.85 Aligned_cols=34 Identities=9% Similarity=0.115 Sum_probs=22.4
Q ss_pred cCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008887 463 EKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAA 519 (550)
Q Consensus 463 g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~ 519 (550)
+.|++|.++.+++++.+ +.|+.++|+.+|+++++
T Consensus 3 ~~~~~A~~~I~kaL~~d-----------------------E~g~~e~Al~~Y~~gi~ 36 (79)
T cd02679 3 GYYKQAFEEISKALRAD-----------------------EWGDKEQALAHYRKGLR 36 (79)
T ss_pred hHHHHHHHHHHHHhhhh-----------------------hcCCHHHHHHHHHHHHH
Confidence 34667777777777664 34677777777776654
No 493
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=31.72 E-value=91 Score=24.24 Aligned_cols=25 Identities=36% Similarity=0.279 Sum_probs=16.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH
Q 008887 495 VVLASALCNVGRNAEAEKYLRLAAA 519 (550)
Q Consensus 495 ~~La~~~~~~g~~~eA~~~l~~al~ 519 (550)
...|.-+.+.|++++|..+|.++++
T Consensus 10 a~~Ave~D~~g~y~eA~~~Y~~aie 34 (76)
T cd02681 10 ARLAVQRDQEGRYSEAVFYYKEAAQ 34 (76)
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHH
Confidence 3444445567788888877777654
No 494
>PF13934 ELYS: Nuclear pore complex assembly
Probab=31.62 E-value=4e+02 Score=25.42 Aligned_cols=118 Identities=23% Similarity=0.169 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHcCCCCC-----hHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhH
Q 008887 371 ELIALSVKFLSKGDKER-----PIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAI 445 (550)
Q Consensus 371 ~l~~la~~~~~~g~~~~-----A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~ 445 (550)
.+.+.+..|+-.-|++. +...|.....+.++ -.....|--++..+++++|++++-.. .. .|..+
T Consensus 43 ~~~K~~l~~YlLlD~~~~~~~~~~~~Fa~~f~ip~~--~~~~~~g~W~LD~~~~~~A~~~L~~p-s~-----~~~~~--- 111 (226)
T PF13934_consen 43 LLKKHSLFYYLLLDLDDTRPSELAESFARAFGIPPK--YIKFIQGFWLLDHGDFEEALELLSHP-SL-----IPWFP--- 111 (226)
T ss_pred HHHhHHHHHHHHHhcCccccccHHHHHHHHhCCCHH--HHHHHHHHHHhChHhHHHHHHHhCCC-CC-----CcccH---
Confidence 33456666666666654 35556555555433 23445566666677777777766222 11 12222
Q ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHH
Q 008887 446 DLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRL 516 (550)
Q Consensus 446 ~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~ 516 (550)
..+..++..+|+.+.|+.+++..--- .... ++...+..+ ...|...||..+-+.
T Consensus 112 -------~~Il~~L~~~~~~~lAL~y~~~~~p~--l~s~-------~~~~~~~~~-La~~~v~EAf~~~R~ 165 (226)
T PF13934_consen 112 -------DKILQALLRRGDPKLALRYLRAVGPP--LSSP-------EALTLYFVA-LANGLVTEAFSFQRS 165 (226)
T ss_pred -------HHHHHHHHHCCChhHHHHHHHhcCCC--CCCH-------HHHHHHHHH-HHcCCHHHHHHHHHh
Confidence 12555566688999888888763211 2222 333333333 556777777765544
No 495
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=31.59 E-value=2.1e+02 Score=31.49 Aligned_cols=60 Identities=18% Similarity=0.224 Sum_probs=32.3
Q ss_pred CCChHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHH
Q 008887 366 NLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLE 427 (550)
Q Consensus 366 ~l~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~ 427 (550)
.++..+++..|..+-.-|+.++|-++|++.+..+++ +.++..+.-+.+.|-..+|...++
T Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 98 (578)
T PRK15490 39 ALTSLAMLKKAEFLHDVNETERAYALYETLIAQNND--EARYEYARRLYNTGLAKDAQLILK 98 (578)
T ss_pred chhHHHHHHHhhhhhhhhhhHhHHHHHHHHHHhCCc--chHHHHHHHHHhhhhhhHHHHHHH
Confidence 344445555555555555555555555555555555 445555555555555555555444
No 496
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=30.55 E-value=1.1e+02 Score=33.55 Aligned_cols=58 Identities=16% Similarity=0.121 Sum_probs=37.6
Q ss_pred HHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCCh
Q 008887 380 LSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEP 442 (550)
Q Consensus 380 ~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~ 442 (550)
.++...+.+..+.+.-+.-...........+..+..-++.++|-++|++.+.. +|++.
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~ 76 (578)
T PRK15490 19 KQEKKLAQAVALIDSELPTEALTSLAMLKKAEFLHDVNETERAYALYETLIAQ-----NNDEA 76 (578)
T ss_pred HHHhhHHHHHHHHHHhCCccchhHHHHHHHhhhhhhhhhhHhHHHHHHHHHHh-----CCcch
Confidence 34445566666666655555555666666777777777777777777777777 56544
No 497
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=30.53 E-value=1.5e+02 Score=33.87 Aligned_cols=25 Identities=12% Similarity=0.080 Sum_probs=22.6
Q ss_pred HHHHHHHHHcCCCCChHHHHHHHHh
Q 008887 373 IALSVKFLSKGDKERPIPLLQLALN 397 (550)
Q Consensus 373 ~~la~~~~~~g~~~~A~~~~~~aL~ 397 (550)
...|..++.+|++++|...|-+++.
T Consensus 372 ~kYgd~Ly~Kgdf~~A~~qYI~tI~ 396 (933)
T KOG2114|consen 372 RKYGDYLYGKGDFDEATDQYIETIG 396 (933)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHcc
Confidence 3788889999999999999999987
No 498
>PRK02201 putative inner membrane protein translocase component YidC; Provisional
Probab=30.34 E-value=1.6e+02 Score=30.45 Aligned_cols=30 Identities=3% Similarity=-0.052 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHh--hhcCChHHHHHHHHHHHH
Q 008887 104 VRALISFLDTYH--DFTGFPWWTIIVSSTVAL 133 (550)
Q Consensus 104 ~~~~~~~l~~~h--~~~glpw~~~I~~~t~~v 133 (550)
+.++.+++.++| ...+..+|++-++..+++
T Consensus 109 v~P~~~il~~i~~~~~~~~~~G~~w~laII~~ 140 (357)
T PRK02201 109 VYPIAQIILSIMASQSLSELYGWSTILAIIVV 140 (357)
T ss_pred HHHHHHHHHHHHHhccccCcccHHHHHHHHHH
Confidence 455666666775 334445555544444333
No 499
>PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway. To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. Trs120 is a subunit specific to the TRAPP II complex [] along with Trs65p and Trs130p(TRAPPC10). It is suggested that Trs120p is required for the stability of the Trs130p subunit, suggesting that these two proteins might interact in some way []. It is likely that there is a complex function for TRAPP II in multiple pathways [].
Probab=30.20 E-value=4.3e+02 Score=32.19 Aligned_cols=94 Identities=17% Similarity=0.011 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHHhc--------------------CHHHHHHHHHHHhcC
Q 008887 419 LEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQE--------------------KWEEGIAHLERIGNL 478 (550)
Q Consensus 419 ~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~g--------------------~~~eA~~~~~~al~~ 478 (550)
+++|+.+|.++.... .+....-...++...++..+.... ...++.+...+++..
T Consensus 361 ~~~~l~~Y~~~~~~~------~~~~p~lv~~E~~lr~~~~l~~~~~~~~l~~iV~~~~~~~~~~~~~~eI~~~l~~~~~~ 434 (1185)
T PF08626_consen 361 YEKALSLYSRSTNDT------SEYVPQLVYSEACLRFARFLVAQHLSDNLDHIVKRPLTPTPNISSRSEIAEFLFKAFPL 434 (1185)
T ss_pred HHHHHHHHHHhhccc------cccCcchHHHHHHHHHHHHHHHhhcccchhhhhccccccccCCCCHHHHHHHHHHhhhh
Confidence 456667776664331 111011122235555666666666 778888888888876
Q ss_pred CCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 008887 479 KEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAH 520 (550)
Q Consensus 479 ~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~ 520 (550)
. ..+. ........+..+|.+|...|-..++.-+++.++..
T Consensus 435 ~-l~~l-~~~dqi~i~~~lA~vy~~lG~~RK~AFvlR~l~~~ 474 (1185)
T PF08626_consen 435 Q-LKDL-SVEDQIRIYSGLASVYGSLGFHRKKAFVLRELAVQ 474 (1185)
T ss_pred h-hhhC-CHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence 5 3322 22334578999999999999888888777776543
No 500
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=29.74 E-value=5e+02 Score=28.98 Aligned_cols=124 Identities=13% Similarity=0.094 Sum_probs=69.1
Q ss_pred HHHHHHHHHHHcCCCCChHHHHHHHHhh-------------CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcC
Q 008887 371 ELIALSVKFLSKGDKERPIPLLQLALNK-------------EPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAG 437 (550)
Q Consensus 371 ~l~~la~~~~~~g~~~~A~~~~~~aL~~-------------~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~ 437 (550)
++-.+|...+..=+++-|.+.|.+.-.+ ......--..++.++...|++.||.+.|.+.-..
T Consensus 587 DW~~LA~~ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iLlA~~~Ay~gKF~EAAklFk~~G~e----- 661 (1081)
T KOG1538|consen 587 DWRELAMEALEALDFETARKAYIRVRDLRYLELISELEERKKRGETPNDLLLADVFAYQGKFHEAAKLFKRSGHE----- 661 (1081)
T ss_pred hHHHHHHHHHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHHHHHHHHhhhhHHHHHHHHHHcCch-----
Confidence 3445666666666667676666655321 1112122456888899999999999988664222
Q ss_pred CCCChhhHHHH-HHHHHHHHHHHHHhcCHHHHHHHHHHHhcCC-CCCCccccccchhHHHHHHHHHHhcCCHHHHHHH
Q 008887 438 HPTEPEAIDLL-IVASQWSGVACIRQEKWEEGIAHLERIGNLK-EPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKY 513 (550)
Q Consensus 438 ~p~~~~~~~~l-~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~-~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~ 513 (550)
+. .-+.. -.-.+.++.-+...|.-++-..+.+|-.+-. +.+.+ ..-|+.+...|+.++|+..
T Consensus 662 ---nR-AlEmyTDlRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~keP----------kaAAEmLiSaGe~~KAi~i 725 (1081)
T KOG1538|consen 662 ---NR-ALEMYTDLRMFDYAQEFLGSGDPKEKKMLIRKRADWARNIKEP----------KAAAEMLISAGEHVKAIEI 725 (1081)
T ss_pred ---hh-HHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcCCc----------HHHHHHhhcccchhhhhhh
Confidence 00 00000 0123346667777787777777766543321 01111 1235666777777777754
Done!