Query 008887
Match_columns 550
No_of_seqs 396 out of 3113
Neff 8.8
Searched_HMMs 29240
Date Mon Mar 25 14:02:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008887.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008887hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gyw_A UDP-N-acetylglucosamine 99.7 2.6E-17 8.7E-22 183.4 19.3 148 368-535 8-155 (723)
2 4ga2_A E3 SUMO-protein ligase 99.7 2.1E-18 7.1E-23 154.3 6.2 142 374-535 2-144 (150)
3 2pl2_A Hypothetical conserved 99.7 1.5E-16 5.1E-21 151.1 18.1 146 368-534 4-160 (217)
4 3vtx_A MAMA; tetratricopeptide 99.7 2.8E-16 9.7E-21 144.2 19.3 147 368-534 4-150 (184)
5 2pl2_A Hypothetical conserved 99.7 1.1E-16 3.8E-21 152.0 16.7 147 367-534 37-194 (217)
6 4gco_A Protein STI-1; structur 99.7 2.4E-16 8.2E-21 136.5 13.9 120 394-533 4-123 (126)
7 4i17_A Hypothetical protein; T 99.7 4.7E-16 1.6E-20 148.0 16.8 156 367-535 5-163 (228)
8 4i17_A Hypothetical protein; T 99.7 9.5E-16 3.2E-20 145.9 17.3 153 368-533 41-222 (228)
9 3urz_A Uncharacterized protein 99.7 9.1E-16 3.1E-20 144.7 16.3 152 368-533 3-198 (208)
10 2h6f_A Protein farnesyltransfe 99.7 1E-15 3.5E-20 158.2 16.7 150 368-537 96-246 (382)
11 3vtx_A MAMA; tetratricopeptide 99.7 1.4E-15 4.8E-20 139.5 15.8 139 368-526 38-176 (184)
12 3gyz_A Chaperone protein IPGC; 99.6 1.1E-15 3.8E-20 136.7 12.9 116 390-525 23-138 (151)
13 2vgx_A Chaperone SYCD; alterna 99.6 1.9E-15 6.4E-20 134.7 12.1 126 387-532 5-130 (148)
14 3qky_A Outer membrane assembly 99.6 1.2E-14 4.1E-19 141.5 18.8 153 367-533 13-193 (261)
15 4gco_A Protein STI-1; structur 99.6 4.9E-15 1.7E-19 128.1 13.6 113 369-501 13-125 (126)
16 4gyw_A UDP-N-acetylglucosamine 99.6 2E-15 6.9E-20 168.2 13.3 136 368-523 42-177 (723)
17 2h6f_A Protein farnesyltransfe 99.6 5.4E-15 1.8E-19 152.9 13.8 148 367-534 129-283 (382)
18 2xcb_A PCRH, regulatory protei 99.6 6.3E-15 2.1E-19 129.9 11.4 124 390-533 5-128 (142)
19 2fo7_A Synthetic consensus TPR 99.6 6.8E-14 2.3E-18 119.5 16.4 134 370-523 2-135 (136)
20 4abn_A Tetratricopeptide repea 99.6 1.4E-14 4.8E-19 154.3 14.7 147 367-534 135-301 (474)
21 2ho1_A Type 4 fimbrial biogene 99.6 2E-13 6.7E-18 131.2 20.6 145 369-533 37-183 (252)
22 2yhc_A BAMD, UPF0169 lipoprote 99.6 1.4E-13 4.6E-18 131.2 19.0 156 368-533 3-192 (225)
23 1w3b_A UDP-N-acetylglucosamine 99.6 8E-14 2.7E-18 143.4 18.6 147 368-534 236-382 (388)
24 3u4t_A TPR repeat-containing p 99.6 1.2E-14 4.1E-19 141.3 11.8 148 368-532 2-149 (272)
25 2q7f_A YRRB protein; TPR, prot 99.6 8.4E-14 2.9E-18 132.6 17.2 146 368-533 90-235 (243)
26 2pzi_A Probable serine/threoni 99.6 9.7E-15 3.3E-19 162.6 12.1 146 368-534 432-577 (681)
27 2e2e_A Formate-dependent nitri 99.6 6.2E-14 2.1E-18 127.8 15.1 133 379-531 20-155 (177)
28 2vq2_A PILW, putative fimbrial 99.5 1.8E-13 6.1E-18 128.4 18.5 147 369-533 8-155 (225)
29 3as5_A MAMA; tetratricopeptide 99.5 1.1E-13 3.9E-18 125.3 16.5 143 371-533 10-152 (186)
30 2q7f_A YRRB protein; TPR, prot 99.5 1.8E-13 6.3E-18 130.2 18.7 147 368-534 56-202 (243)
31 3as5_A MAMA; tetratricopeptide 99.5 1.6E-13 5.4E-18 124.3 17.1 139 368-526 41-179 (186)
32 3uq3_A Heat shock protein STI1 99.5 8.7E-14 3E-18 133.5 15.8 145 369-533 79-255 (258)
33 4eqf_A PEX5-related protein; a 99.5 1.1E-13 3.7E-18 141.0 17.4 154 368-534 98-290 (365)
34 3qou_A Protein YBBN; thioredox 99.5 5.2E-14 1.8E-18 139.7 14.3 151 368-538 116-268 (287)
35 4abn_A Tetratricopeptide repea 99.5 2.6E-14 8.9E-19 152.2 12.8 146 368-534 101-267 (474)
36 3qky_A Outer membrane assembly 99.5 1.6E-13 5.4E-18 133.5 16.6 150 369-528 52-232 (261)
37 4ga2_A E3 SUMO-protein ligase 99.5 5.5E-14 1.9E-18 125.3 12.2 117 370-506 32-149 (150)
38 3hym_B Cell division cycle pro 99.5 1.6E-13 5.4E-18 136.7 16.6 157 369-537 159-316 (330)
39 1w3b_A UDP-N-acetylglucosamine 99.5 2.8E-13 9.5E-18 139.3 18.8 147 368-534 202-348 (388)
40 3uq3_A Heat shock protein STI1 99.5 1.5E-13 5.3E-18 131.7 15.7 159 369-534 5-182 (258)
41 4eqf_A PEX5-related protein; a 99.5 1.4E-13 4.8E-18 140.2 16.1 154 368-534 64-256 (365)
42 2ho1_A Type 4 fimbrial biogene 99.5 3.2E-13 1.1E-17 129.7 17.3 146 368-533 70-217 (252)
43 3upv_A Heat shock protein STI1 99.5 2E-13 6.8E-18 117.1 14.2 114 401-534 2-121 (126)
44 4gcn_A Protein STI-1; structur 99.5 1.6E-13 5.5E-18 118.6 13.5 118 402-533 7-124 (127)
45 3ieg_A DNAJ homolog subfamily 99.5 5.8E-13 2E-17 133.9 19.3 152 368-535 187-350 (359)
46 3gyz_A Chaperone protein IPGC; 99.5 1.2E-13 4.2E-18 123.3 12.5 102 368-482 35-136 (151)
47 2vsy_A XCC0866; transferase, g 99.5 2.3E-13 8E-18 148.0 17.0 142 367-528 21-165 (568)
48 2vq2_A PILW, putative fimbrial 99.5 4.3E-13 1.5E-17 125.7 16.6 148 368-533 41-190 (225)
49 1a17_A Serine/threonine protei 99.5 4.3E-13 1.5E-17 119.8 15.4 133 368-520 12-146 (166)
50 1fch_A Peroxisomal targeting s 99.5 8E-13 2.7E-17 134.2 19.3 154 368-534 97-294 (368)
51 3ieg_A DNAJ homolog subfamily 99.5 5.7E-13 2E-17 134.0 18.1 146 368-533 2-162 (359)
52 1hh8_A P67PHOX, NCF-2, neutrop 99.5 4.7E-13 1.6E-17 125.3 16.0 140 371-526 8-156 (213)
53 2r5s_A Uncharacterized protein 99.5 6.6E-14 2.3E-18 127.9 9.6 145 371-536 8-155 (176)
54 1xnf_A Lipoprotein NLPI; TPR, 99.5 1.3E-12 4.4E-17 126.8 19.2 147 368-527 42-251 (275)
55 1fch_A Peroxisomal targeting s 99.5 1.2E-12 4.1E-17 132.9 19.3 153 369-534 64-260 (368)
56 2lni_A Stress-induced-phosphop 99.5 6E-13 2.1E-17 114.0 14.0 120 367-506 14-133 (133)
57 1qqe_A Vesicular transport pro 99.5 2.6E-13 8.8E-18 134.8 13.3 152 369-527 77-235 (292)
58 4gcn_A Protein STI-1; structur 99.5 3.4E-13 1.2E-17 116.5 12.4 104 371-479 10-113 (127)
59 3hym_B Cell division cycle pro 99.5 1.8E-12 6E-17 129.1 18.5 146 368-533 89-244 (330)
60 1p5q_A FKBP52, FK506-binding p 99.5 1.9E-13 6.3E-18 138.9 11.2 142 381-535 125-274 (336)
61 3mkr_A Coatomer subunit epsilo 99.5 1.7E-12 5.9E-17 129.0 17.9 146 368-533 129-277 (291)
62 1p5q_A FKBP52, FK506-binding p 99.4 8.2E-13 2.8E-17 134.1 15.2 132 369-520 147-294 (336)
63 2hr2_A Hypothetical protein; a 99.4 2.4E-13 8.1E-18 121.1 9.8 118 403-533 11-144 (159)
64 2xpi_A Anaphase-promoting comp 99.4 6.3E-13 2.2E-17 144.5 15.1 154 368-534 440-593 (597)
65 3sz7_A HSC70 cochaperone (SGT) 99.4 9.3E-13 3.2E-17 118.6 13.7 104 368-484 10-113 (164)
66 2y4t_A DNAJ homolog subfamily 99.4 2.6E-12 9E-17 134.3 19.3 151 368-534 210-372 (450)
67 2vsy_A XCC0866; transferase, g 99.4 7.3E-13 2.5E-17 144.1 15.5 133 382-534 2-134 (568)
68 3u4t_A TPR repeat-containing p 99.4 1.8E-12 6.1E-17 125.8 16.7 146 368-534 36-185 (272)
69 2pzi_A Probable serine/threoni 99.4 4.4E-13 1.5E-17 149.2 13.5 135 380-535 402-544 (681)
70 3mkr_A Coatomer subunit epsilo 99.4 1.9E-12 6.6E-17 128.6 16.5 144 368-534 100-243 (291)
71 2xcb_A PCRH, regulatory protei 99.4 6.1E-13 2.1E-17 117.0 11.3 104 368-484 17-120 (142)
72 3upv_A Heat shock protein STI1 99.4 1.6E-12 5.3E-17 111.4 13.3 122 368-503 3-124 (126)
73 3q49_B STIP1 homology and U bo 99.4 2.7E-12 9.1E-17 111.1 14.8 116 398-533 4-124 (137)
74 3cv0_A Peroxisome targeting si 99.4 5.5E-12 1.9E-16 125.3 19.1 154 368-534 54-249 (327)
75 2vgx_A Chaperone SYCD; alterna 99.4 5.8E-13 2E-17 118.4 10.6 104 368-484 20-123 (148)
76 3sz7_A HSC70 cochaperone (SGT) 99.4 1.9E-12 6.4E-17 116.6 14.0 84 399-502 7-90 (164)
77 2vyi_A SGTA protein; chaperone 99.4 2.4E-12 8.3E-17 109.4 13.8 120 368-507 11-130 (131)
78 3cv0_A Peroxisome targeting si 99.4 6.7E-12 2.3E-16 124.7 18.9 154 368-534 20-215 (327)
79 2fbn_A 70 kDa peptidylprolyl i 99.4 8.1E-13 2.8E-17 122.9 11.2 149 376-537 11-168 (198)
80 2y4t_A DNAJ homolog subfamily 99.4 3.4E-12 1.2E-16 133.4 17.2 153 368-533 25-185 (450)
81 3rkv_A Putative peptidylprolyl 99.4 3.9E-12 1.3E-16 114.2 15.3 125 402-534 10-141 (162)
82 2yhc_A BAMD, UPF0169 lipoprote 99.4 2.2E-12 7.7E-17 122.7 14.4 148 369-526 41-219 (225)
83 2fbn_A 70 kDa peptidylprolyl i 99.4 2.6E-12 9E-17 119.4 12.9 132 369-520 38-186 (198)
84 2c2l_A CHIP, carboxy terminus 99.4 1.2E-12 4.3E-17 129.3 11.1 151 368-533 3-177 (281)
85 2xpi_A Anaphase-promoting comp 99.4 6.6E-12 2.3E-16 136.4 17.8 155 368-535 406-560 (597)
86 1xnf_A Lipoprotein NLPI; TPR, 99.4 2.4E-12 8.1E-17 124.9 12.8 129 380-528 16-148 (275)
87 1hxi_A PEX5, peroxisome target 99.4 2.6E-12 9E-17 109.9 11.2 102 405-526 19-120 (121)
88 1kt0_A FKBP51, 51 kDa FK506-bi 99.4 5.4E-13 1.8E-17 141.4 8.3 143 381-536 246-396 (457)
89 1hxi_A PEX5, peroxisome target 99.4 3.3E-12 1.1E-16 109.3 11.7 101 371-484 19-119 (121)
90 1elw_A TPR1-domain of HOP; HOP 99.4 1.7E-11 5.8E-16 102.2 15.1 111 403-533 4-114 (118)
91 1elw_A TPR1-domain of HOP; HOP 99.4 1.7E-11 5.8E-16 102.1 15.1 114 369-502 4-117 (118)
92 3q49_B STIP1 homology and U bo 99.4 4.7E-12 1.6E-16 109.5 12.0 124 367-505 7-130 (137)
93 2lni_A Stress-induced-phosphop 99.4 6.3E-12 2.2E-16 107.5 12.5 116 399-534 12-127 (133)
94 3ro3_A PINS homolog, G-protein 99.4 2.2E-12 7.4E-17 113.8 9.7 146 370-523 10-161 (164)
95 2ond_A Cleavage stimulation fa 99.3 3.1E-11 1E-15 120.6 18.4 148 367-533 48-211 (308)
96 2dba_A Smooth muscle cell asso 99.3 1.5E-11 5.3E-16 107.3 14.3 117 400-533 25-141 (148)
97 1qqe_A Vesicular transport pro 99.3 5.3E-12 1.8E-16 125.3 12.6 160 370-537 118-286 (292)
98 1na0_A Designed protein CTPR3; 99.3 2.2E-11 7.6E-16 102.4 14.6 117 369-505 9-125 (125)
99 1wao_1 Serine/threonine protei 99.3 2.6E-13 9E-18 144.5 3.1 132 373-524 10-154 (477)
100 3fp2_A TPR repeat-containing p 99.3 1.3E-11 4.6E-16 131.9 16.4 138 373-531 247-384 (537)
101 2xev_A YBGF; tetratricopeptide 99.3 2.2E-11 7.4E-16 104.1 14.4 115 405-533 4-118 (129)
102 3fp2_A TPR repeat-containing p 99.3 6.7E-12 2.3E-16 134.2 13.8 150 368-531 343-502 (537)
103 2vyi_A SGTA protein; chaperone 99.3 1.9E-11 6.4E-16 103.8 13.9 117 398-534 7-123 (131)
104 1na0_A Designed protein CTPR3; 99.3 5E-11 1.7E-15 100.2 16.2 116 399-534 4-120 (125)
105 2gw1_A Mitochondrial precursor 99.3 7E-12 2.4E-16 133.0 13.5 152 368-533 337-491 (514)
106 2gw1_A Mitochondrial precursor 99.3 1.6E-11 5.3E-16 130.3 16.2 153 368-534 303-458 (514)
107 3edt_B KLC 2, kinesin light ch 99.3 5.6E-12 1.9E-16 122.2 11.6 148 369-520 43-198 (283)
108 2if4_A ATFKBP42; FKBP-like, al 99.3 1.8E-12 6.1E-17 131.7 8.3 139 369-527 179-335 (338)
109 2kck_A TPR repeat; tetratricop 99.3 8.4E-12 2.9E-16 103.1 11.0 106 399-524 2-110 (112)
110 1kt0_A FKBP51, 51 kDa FK506-bi 99.3 1.1E-11 3.7E-16 131.3 14.7 130 369-518 268-413 (457)
111 2xev_A YBGF; tetratricopeptide 99.3 1.6E-11 5.5E-16 104.9 13.0 118 370-504 3-123 (129)
112 3urz_A Uncharacterized protein 99.3 1.8E-11 6E-16 115.1 14.3 113 402-534 3-131 (208)
113 2hr2_A Hypothetical protein; a 99.3 1.1E-11 3.8E-16 110.3 12.1 115 369-485 11-137 (159)
114 2dba_A Smooth muscle cell asso 99.3 2.7E-11 9.2E-16 105.7 14.1 117 367-503 26-145 (148)
115 3gw4_A Uncharacterized protein 99.3 5.3E-12 1.8E-16 116.7 9.9 147 368-521 25-177 (203)
116 2r5s_A Uncharacterized protein 99.3 1E-11 3.5E-16 113.3 11.6 133 368-519 39-172 (176)
117 3ulq_A Response regulator aspa 99.3 7.7E-12 2.6E-16 128.6 12.0 153 374-533 108-272 (383)
118 2qfc_A PLCR protein; TPR, HTH, 99.3 1.5E-11 5.2E-16 121.8 12.9 143 372-521 118-267 (293)
119 1ouv_A Conserved hypothetical 99.3 1.1E-10 3.8E-15 113.7 18.8 128 368-521 5-144 (273)
120 3edt_B KLC 2, kinesin light ch 99.3 1.8E-11 6E-16 118.6 13.0 148 369-521 85-282 (283)
121 4f3v_A ESX-1 secretion system 99.3 1.1E-11 3.8E-16 121.2 11.4 149 368-533 100-249 (282)
122 2ifu_A Gamma-SNAP; membrane fu 99.3 1.3E-11 4.3E-16 123.5 11.9 147 370-526 77-229 (307)
123 3rkv_A Putative peptidylprolyl 99.3 8.2E-12 2.8E-16 112.1 9.5 119 369-506 11-147 (162)
124 1elr_A TPR2A-domain of HOP; HO 99.3 1.9E-11 6.6E-16 103.9 11.2 123 369-505 4-126 (131)
125 1elr_A TPR2A-domain of HOP; HO 99.3 5.3E-11 1.8E-15 101.1 13.3 119 401-533 2-120 (131)
126 3u3w_A Transcriptional activat 99.3 1.7E-11 5.9E-16 121.4 11.7 141 374-521 120-267 (293)
127 4g1t_A Interferon-induced prot 99.3 4.5E-11 1.5E-15 125.9 15.6 151 371-533 53-217 (472)
128 2ond_A Cleavage stimulation fa 99.3 6.7E-11 2.3E-15 118.1 16.0 146 368-533 98-249 (308)
129 3q15_A PSP28, response regulat 99.3 1.4E-11 4.9E-16 126.5 11.3 155 372-533 104-269 (378)
130 3ulq_A Response regulator aspa 99.3 1.5E-11 5.1E-16 126.5 11.4 145 369-521 143-294 (383)
131 3nf1_A KLC 1, kinesin light ch 99.3 2E-11 6.9E-16 120.3 11.8 160 369-533 27-203 (311)
132 3k9i_A BH0479 protein; putativ 99.2 1.4E-11 4.7E-16 104.4 8.5 91 381-484 2-95 (117)
133 3n71_A Histone lysine methyltr 99.2 1.4E-11 4.9E-16 130.8 10.4 152 371-526 311-470 (490)
134 1ihg_A Cyclophilin 40; ppiase 99.2 2E-11 6.8E-16 125.6 10.8 124 370-513 224-363 (370)
135 3rjv_A Putative SEL1 repeat pr 99.2 8.6E-11 2.9E-15 110.8 14.3 144 368-535 17-172 (212)
136 3nf1_A KLC 1, kinesin light ch 99.2 3.9E-11 1.3E-15 118.1 12.4 148 369-520 69-224 (311)
137 3q15_A PSP28, response regulat 99.2 6.4E-11 2.2E-15 121.6 14.1 145 369-522 141-292 (378)
138 1a17_A Serine/threonine protei 99.2 2E-10 6.9E-15 102.2 15.6 112 402-533 12-123 (166)
139 3qou_A Protein YBBN; thioredox 99.2 2.3E-11 8E-16 120.4 10.2 134 368-519 150-283 (287)
140 2c2l_A CHIP, carboxy terminus 99.2 1.4E-10 4.7E-15 114.5 15.7 105 400-524 1-105 (281)
141 3u3w_A Transcriptional activat 99.2 8.6E-11 2.9E-15 116.3 13.9 144 372-522 78-227 (293)
142 1ouv_A Conserved hypothetical 99.2 5E-10 1.7E-14 109.1 18.3 138 368-533 73-226 (273)
143 2qfc_A PLCR protein; TPR, HTH, 99.2 1E-10 3.5E-15 115.8 13.5 143 371-522 77-227 (293)
144 1ihg_A Cyclophilin 40; ppiase 99.2 1.4E-10 4.8E-15 119.2 14.6 122 403-537 223-353 (370)
145 2kck_A TPR repeat; tetratricop 99.2 8.6E-11 3E-15 96.9 10.2 104 368-484 5-111 (112)
146 1zu2_A Mitochondrial import re 99.2 4.4E-11 1.5E-15 106.2 8.8 101 414-534 13-134 (158)
147 3sf4_A G-protein-signaling mod 99.2 4.6E-11 1.6E-15 122.4 9.8 144 370-521 188-337 (406)
148 4a1s_A PINS, partner of inscut 99.2 5.4E-11 1.8E-15 122.8 9.5 151 369-527 223-379 (411)
149 3k9i_A BH0479 protein; putativ 99.1 8.8E-11 3E-15 99.3 8.4 100 415-531 2-101 (117)
150 3ro2_A PINS homolog, G-protein 99.1 6.4E-11 2.2E-15 117.3 8.6 147 370-524 184-336 (338)
151 2ifu_A Gamma-SNAP; membrane fu 99.1 4.8E-11 1.6E-15 119.2 7.2 142 374-524 41-188 (307)
152 4a1s_A PINS, partner of inscut 99.1 1.5E-10 5E-15 119.5 11.0 146 368-521 47-213 (411)
153 2if4_A ATFKBP42; FKBP-like, al 99.1 9.3E-12 3.2E-16 126.4 1.5 122 400-534 176-307 (338)
154 4g1t_A Interferon-induced prot 99.1 3.6E-10 1.2E-14 118.9 13.7 147 368-534 135-290 (472)
155 2fo7_A Synthetic consensus TPR 99.1 1.6E-09 5.5E-14 91.8 15.1 110 404-533 2-111 (136)
156 1zu2_A Mitochondrial import re 99.1 9E-11 3.1E-15 104.2 7.3 92 380-484 13-125 (158)
157 3sf4_A G-protein-signaling mod 99.1 2.2E-10 7.4E-15 117.3 11.3 145 368-520 8-176 (406)
158 3ro2_A PINS homolog, G-protein 99.1 2E-10 6.9E-15 113.7 10.8 144 369-520 5-172 (338)
159 1hh8_A P67PHOX, NCF-2, neutrop 99.1 9.2E-10 3.2E-14 102.6 14.5 110 368-484 36-155 (213)
160 2e2e_A Formate-dependent nitri 99.1 8.5E-10 2.9E-14 100.0 13.5 105 367-484 42-149 (177)
161 2ooe_A Cleavage stimulation fa 99.1 2.1E-09 7.1E-14 115.6 18.0 149 366-533 269-433 (530)
162 3gw4_A Uncharacterized protein 99.1 5.3E-10 1.8E-14 103.1 10.6 136 379-521 2-137 (203)
163 3rjv_A Putative SEL1 repeat pr 99.1 1.6E-09 5.6E-14 101.9 13.7 142 368-533 49-208 (212)
164 2kat_A Uncharacterized protein 99.0 1.4E-09 4.9E-14 91.2 11.6 84 386-482 2-85 (115)
165 1dce_A Protein (RAB geranylger 99.0 1.9E-09 6.6E-14 116.9 15.4 147 368-534 62-235 (567)
166 3dra_A Protein farnesyltransfe 99.0 8.3E-09 2.8E-13 102.7 18.1 144 371-534 34-189 (306)
167 3dra_A Protein farnesyltransfe 99.0 6.3E-09 2.1E-13 103.6 17.0 150 368-537 66-232 (306)
168 2l6j_A TPR repeat-containing p 99.0 1.8E-10 6.3E-15 95.3 4.7 102 368-475 3-104 (111)
169 1wao_1 Serine/threonine protei 99.0 3E-10 1E-14 120.8 7.0 112 403-534 6-117 (477)
170 1hz4_A MALT regulatory protein 99.0 3.7E-09 1.3E-13 107.8 14.9 144 371-521 55-204 (373)
171 1hz4_A MALT regulatory protein 99.0 3E-09 1E-13 108.4 14.2 146 371-523 16-167 (373)
172 2l6j_A TPR repeat-containing p 99.0 3.8E-10 1.3E-14 93.4 5.2 101 402-516 3-103 (111)
173 1dce_A Protein (RAB geranylger 99.0 1E-08 3.4E-13 111.2 17.4 144 374-537 33-190 (567)
174 2ooe_A Cleavage stimulation fa 98.9 7.3E-09 2.5E-13 111.3 15.2 138 368-525 320-459 (530)
175 2xm6_A Protein corresponding t 98.9 1.9E-08 6.4E-13 107.0 16.4 141 368-534 290-449 (490)
176 3dss_A Geranylgeranyl transfer 98.9 5.8E-08 2E-12 97.4 18.9 145 374-538 34-192 (331)
177 2kat_A Uncharacterized protein 98.9 8.6E-09 2.9E-13 86.3 10.7 97 421-537 3-101 (115)
178 2xm6_A Protein corresponding t 98.9 4.3E-08 1.5E-12 104.2 18.5 63 368-432 38-108 (490)
179 3q7a_A Farnesyltransferase alp 98.9 1.9E-08 6.4E-13 101.4 14.4 149 370-538 89-255 (349)
180 1na3_A Designed protein CTPR2; 98.9 1.1E-08 3.9E-13 81.0 10.2 84 402-505 8-91 (91)
181 3q7a_A Farnesyltransferase alp 98.9 4E-08 1.4E-12 99.0 16.3 141 374-534 58-210 (349)
182 3dss_A Geranylgeranyl transfer 98.8 5.1E-08 1.7E-12 97.8 15.9 128 385-532 90-234 (331)
183 1na3_A Designed protein CTPR2; 98.8 3E-08 1E-12 78.5 11.0 83 369-463 9-91 (91)
184 3qwp_A SET and MYND domain-con 98.8 9.3E-09 3.2E-13 107.5 9.7 130 371-504 289-426 (429)
185 1klx_A Cysteine rich protein B 98.8 2.5E-08 8.7E-13 87.0 10.8 119 383-531 9-135 (138)
186 3n71_A Histone lysine methyltr 98.8 3.2E-08 1.1E-12 105.0 13.4 118 408-529 314-436 (490)
187 3ma5_A Tetratricopeptide repea 98.8 1.6E-08 5.5E-13 82.8 8.5 70 398-479 2-71 (100)
188 4f3v_A ESX-1 secretion system 98.8 4.3E-08 1.5E-12 95.8 12.2 141 371-531 9-214 (282)
189 3mv2_B Coatomer subunit epsilo 98.8 6E-08 2.1E-12 95.9 13.3 147 368-531 99-261 (310)
190 3ro3_A PINS homolog, G-protein 98.8 2.2E-08 7.5E-13 87.6 9.1 111 403-521 9-119 (164)
191 2kc7_A BFR218_protein; tetratr 98.8 1.1E-08 3.7E-13 83.1 6.5 91 373-484 4-95 (99)
192 3qww_A SET and MYND domain-con 98.7 3.3E-08 1.1E-12 103.3 11.6 111 415-529 310-425 (433)
193 3e4b_A ALGK; tetratricopeptide 98.7 5.3E-08 1.8E-12 102.7 13.0 134 370-532 177-325 (452)
194 3qww_A SET and MYND domain-con 98.7 1.9E-08 6.6E-13 105.0 9.1 117 374-494 303-427 (433)
195 3ma5_A Tetratricopeptide repea 98.7 6.6E-08 2.3E-12 79.1 10.3 84 438-536 3-88 (100)
196 4b4t_Q 26S proteasome regulato 98.7 4.2E-08 1.4E-12 101.8 11.4 145 368-520 3-164 (434)
197 3qwp_A SET and MYND domain-con 98.7 6.3E-08 2.1E-12 101.2 12.7 120 410-533 294-418 (429)
198 2kc7_A BFR218_protein; tetratr 98.7 2.5E-08 8.4E-13 80.9 7.1 90 407-523 4-93 (99)
199 3ly7_A Transcriptional activat 98.7 2.2E-07 7.4E-12 93.6 15.1 146 365-526 192-345 (372)
200 4b4t_Q 26S proteasome regulato 98.6 9.8E-08 3.4E-12 99.0 10.9 144 370-521 56-205 (434)
201 3e4b_A ALGK; tetratricopeptide 98.5 1.6E-06 5.6E-11 91.2 17.2 143 368-535 140-293 (452)
202 1xi4_A Clathrin heavy chain; a 98.5 1.6E-06 5.5E-11 99.8 16.5 160 368-534 1104-1323(1630)
203 2v5f_A Prolyl 4-hydroxylase su 98.4 1.5E-06 5.2E-11 71.6 10.3 82 451-533 7-88 (104)
204 3mv2_B Coatomer subunit epsilo 98.4 2.6E-06 9.1E-11 84.1 12.7 144 368-533 135-295 (310)
205 1pc2_A Mitochondria fission pr 98.3 2.4E-06 8.3E-11 74.9 10.6 98 419-535 14-115 (152)
206 3bee_A Putative YFRE protein; 98.3 7.1E-06 2.4E-10 66.1 12.5 65 368-432 5-72 (93)
207 1klx_A Cysteine rich protein B 98.3 2E-06 6.8E-11 74.8 9.6 89 375-479 31-127 (138)
208 3bee_A Putative YFRE protein; 98.3 3.8E-06 1.3E-10 67.7 10.4 39 399-442 2-43 (93)
209 1b89_A Protein (clathrin heavy 98.3 1.6E-06 5.6E-11 89.5 10.2 128 371-535 124-251 (449)
210 3u64_A Protein TP_0956; tetrat 98.2 5.8E-06 2E-10 80.1 11.6 116 391-524 139-273 (301)
211 2v5f_A Prolyl 4-hydroxylase su 98.2 6.4E-06 2.2E-10 67.8 10.0 71 367-442 3-80 (104)
212 1pc2_A Mitochondria fission pr 98.2 5.4E-06 1.9E-10 72.6 9.9 87 386-484 15-105 (152)
213 4e6h_A MRNA 3'-END-processing 98.1 0.00013 4.3E-09 80.4 20.4 160 367-533 341-512 (679)
214 3u64_A Protein TP_0956; tetrat 98.1 7.2E-06 2.4E-10 79.4 7.9 83 387-482 181-272 (301)
215 1b89_A Protein (clathrin heavy 98.0 3.3E-06 1.1E-10 87.3 4.5 112 371-517 63-174 (449)
216 1xi4_A Clathrin heavy chain; a 98.0 2.8E-05 9.6E-10 89.8 11.9 113 374-523 1054-1166(1630)
217 1nzn_A CGI-135 protein, fissio 97.8 0.00019 6.5E-09 60.5 11.6 100 417-534 15-117 (126)
218 3ffl_A Anaphase-promoting comp 97.8 8.2E-05 2.8E-09 65.6 9.2 123 371-502 22-166 (167)
219 4h7y_A Dual specificity protei 97.7 0.00043 1.5E-08 59.7 11.7 122 398-532 8-135 (161)
220 4e6h_A MRNA 3'-END-processing 97.5 0.00089 3.1E-08 73.6 13.6 145 371-532 436-582 (679)
221 1nzn_A CGI-135 protein, fissio 97.4 0.00054 1.8E-08 57.8 8.7 91 382-484 14-108 (126)
222 3ly7_A Transcriptional activat 97.2 0.00088 3E-08 67.4 8.4 74 397-484 271-344 (372)
223 1y8m_A FIS1; mitochondria, unk 97.2 0.0028 9.5E-08 54.3 10.2 77 451-534 41-120 (144)
224 3o48_A Mitochondria fission 1 97.1 0.0022 7.4E-08 54.3 9.3 79 451-536 42-123 (134)
225 4g26_A Pentatricopeptide repea 97.1 0.0051 1.8E-07 65.2 14.1 124 385-526 86-212 (501)
226 3ffl_A Anaphase-promoting comp 97.1 0.0031 1.1E-07 55.6 10.0 112 403-517 20-148 (167)
227 4g26_A Pentatricopeptide repea 97.1 0.014 4.9E-07 61.7 17.3 142 368-527 24-178 (501)
228 1y8m_A FIS1; mitochondria, unk 96.7 0.034 1.1E-06 47.6 13.2 92 367-484 17-111 (144)
229 2uy1_A Cleavage stimulation fa 96.7 0.046 1.6E-06 57.7 17.4 71 451-530 288-359 (493)
230 2uy1_A Cleavage stimulation fa 96.7 0.028 9.7E-07 59.3 15.8 129 367-517 211-380 (493)
231 3o48_A Mitochondria fission 1 96.6 0.022 7.4E-07 48.2 11.2 71 402-484 39-112 (134)
232 1zbp_A Hypothetical protein VP 96.0 0.049 1.7E-06 51.9 11.1 129 377-525 5-134 (273)
233 3mkq_B Coatomer subunit alpha; 95.9 0.13 4.5E-06 45.9 12.9 108 368-516 7-114 (177)
234 3kae_A CDC27, possible protein 95.8 0.19 6.5E-06 44.1 13.2 132 380-531 13-154 (242)
235 2ff4_A Probable regulatory pro 95.4 0.11 3.7E-06 53.0 12.0 113 373-518 119-232 (388)
236 3txn_A 26S proteasome regulato 94.9 0.18 6.3E-06 51.2 11.8 105 408-519 104-209 (394)
237 3kae_A CDC27, possible protein 94.6 1.1 3.6E-05 39.4 14.0 139 374-524 38-241 (242)
238 4h7y_A Dual specificity protei 94.5 0.47 1.6E-05 40.9 11.6 104 366-483 10-127 (161)
239 4gns_B Protein CSD3, chitin bi 94.0 0.21 7.1E-06 55.1 10.5 127 382-517 261-397 (754)
240 4b4t_R RPN7, 26S proteasome re 94.0 0.27 9.2E-06 50.7 11.0 103 371-479 133-238 (429)
241 4b4t_R RPN7, 26S proteasome re 93.9 0.064 2.2E-06 55.5 6.0 109 402-521 130-238 (429)
242 3mkq_A Coatomer beta'-subunit; 93.0 0.25 8.7E-06 54.7 9.6 46 379-429 662-707 (814)
243 3spa_A Mtrpol, DNA-directed RN 92.7 0.92 3.1E-05 51.3 13.1 54 377-430 135-192 (1134)
244 1ya0_A SMG-7 transcript varian 92.6 0.69 2.4E-05 48.5 11.5 62 371-432 154-215 (497)
245 1ya0_A SMG-7 transcript varian 92.5 0.53 1.8E-05 49.4 10.4 80 451-538 154-233 (497)
246 4b4t_P 26S proteasome regulato 92.4 0.66 2.3E-05 48.0 11.1 109 405-520 139-247 (445)
247 3txn_A 26S proteasome regulato 92.3 0.38 1.3E-05 48.8 8.8 125 374-506 104-235 (394)
248 4b4t_S RPN3, 26S proteasome re 92.1 0.28 9.7E-06 51.2 7.7 139 378-525 145-304 (523)
249 4fhn_B Nucleoporin NUP120; pro 91.7 0.58 2E-05 54.6 10.6 135 374-516 817-963 (1139)
250 4b4t_S RPN3, 26S proteasome re 90.7 0.98 3.3E-05 47.2 10.0 110 367-484 179-304 (523)
251 1zbp_A Hypothetical protein VP 90.4 0.82 2.8E-05 43.5 8.3 67 458-532 6-72 (273)
252 4b4t_P 26S proteasome regulato 89.7 1.3 4.6E-05 45.7 10.1 101 373-478 141-247 (445)
253 4gns_B Protein CSD3, chitin bi 89.4 0.46 1.6E-05 52.3 6.6 59 371-429 339-397 (754)
254 1qsa_A Protein (soluble lytic 89.0 1.8 6.2E-05 46.6 10.8 128 371-519 216-347 (618)
255 2ff4_A Probable regulatory pro 88.3 0.93 3.2E-05 46.0 7.6 62 371-432 173-234 (388)
256 3mkq_A Coatomer beta'-subunit; 87.7 2.8 9.7E-05 46.1 11.8 28 368-395 680-707 (814)
257 3spa_A Mtrpol, DNA-directed RN 85.3 5.5 0.00019 45.2 12.0 62 371-432 167-230 (1134)
258 4gq2_M Nucleoporin NUP120; bet 83.4 3.6 0.00012 46.8 10.0 124 374-505 815-950 (950)
259 4fhn_B Nucleoporin NUP120; pro 78.9 9.4 0.00032 44.4 11.6 124 368-507 841-987 (1139)
260 3ax2_A Mitochondrial import re 75.6 2.3 7.9E-05 31.7 3.3 45 489-533 15-59 (73)
261 2wpv_A GET4, UPF0363 protein Y 75.5 20 0.00067 34.9 11.0 24 492-515 135-158 (312)
262 3mkq_B Coatomer subunit alpha; 72.6 45 0.0015 29.4 11.6 57 401-477 6-62 (177)
263 3lpz_A GET4 (YOR164C homolog); 70.0 27 0.00092 34.2 10.5 23 492-514 137-159 (336)
264 1om2_A Protein (mitochondrial 68.7 5.6 0.00019 31.2 4.2 53 481-533 10-62 (95)
265 1qsa_A Protein (soluble lytic 66.1 52 0.0018 35.2 12.7 130 377-516 293-438 (618)
266 3esl_A Checkpoint serine/threo 62.6 87 0.003 28.1 13.7 90 424-523 58-147 (202)
267 1wy6_A Hypothetical protein ST 59.5 28 0.00095 29.5 7.0 62 371-432 92-154 (172)
268 1wy6_A Hypothetical protein ST 57.3 36 0.0012 28.8 7.3 122 374-520 12-154 (172)
269 3ax2_A Mitochondrial import re 53.5 11 0.00038 28.0 3.3 29 451-479 19-47 (73)
270 3lxu_X Tripeptidyl-peptidase 2 52.6 2.6E+02 0.0087 32.8 15.8 151 378-536 1116-1328(1354)
271 2ijq_A Hypothetical protein; s 50.7 49 0.0017 28.6 7.5 66 368-433 31-105 (161)
272 1om2_A Protein (mitochondrial 50.5 24 0.00083 27.6 5.0 42 438-479 9-50 (95)
273 2ijq_A Hypothetical protein; s 47.3 57 0.0019 28.2 7.4 65 453-519 36-103 (161)
274 3t5v_B Nuclear mRNA export pro 47.2 77 0.0026 32.4 9.7 74 451-524 178-254 (455)
275 4aez_C MAD3, mitotic spindle c 46.7 1.4E+02 0.0046 27.3 10.2 88 422-524 96-183 (223)
276 3esl_A Checkpoint serine/threo 46.7 87 0.003 28.1 8.7 79 390-479 58-145 (202)
277 4gq2_M Nucleoporin NUP120; bet 46.0 1.4E+02 0.0047 33.7 12.5 103 408-526 815-933 (950)
278 3mv2_A Coatomer subunit alpha; 45.2 2.2E+02 0.0075 27.5 13.6 28 499-526 215-242 (325)
279 4b4t_O 26S proteasome regulato 44.6 1.7E+02 0.0058 29.1 11.8 96 378-477 85-197 (393)
280 4b4t_O 26S proteasome regulato 43.6 99 0.0034 30.8 9.8 136 383-519 53-197 (393)
281 2wvi_A Mitotic checkpoint seri 42.8 1.6E+02 0.0056 25.3 10.8 87 423-524 43-129 (164)
282 2crb_A Nuclear receptor bindin 42.8 39 0.0013 26.2 4.9 27 406-432 18-44 (97)
283 3t5x_A PCI domain-containing p 40.2 1E+02 0.0035 27.6 8.4 27 406-432 17-43 (203)
284 2cwy_A Hypothetical protein TT 38.5 1.3E+02 0.0043 23.3 7.5 62 407-478 5-68 (94)
285 3t5v_B Nuclear mRNA export pro 38.2 62 0.0021 33.1 7.3 33 450-483 221-254 (455)
286 2cfu_A SDSA1; SDS-hydrolase, l 36.7 30 0.001 37.4 4.9 52 369-420 449-500 (658)
287 1pyv_A ATP synthase beta chain 36.7 33 0.0011 22.2 3.0 15 1-15 1-15 (54)
288 3re2_A Predicted protein; meni 36.7 1.2E+02 0.0041 29.9 8.3 70 401-477 253-324 (472)
289 3mkr_B Coatomer subunit alpha; 36.4 3E+02 0.01 26.5 16.1 27 499-525 206-232 (320)
290 2crb_A Nuclear receptor bindin 36.0 43 0.0015 25.9 4.2 29 490-518 14-42 (97)
291 3t5x_A PCI domain-containing p 34.4 57 0.0019 29.3 5.6 36 490-525 13-48 (203)
292 3re2_A Predicted protein; meni 33.6 3.6E+02 0.012 26.6 11.8 67 368-434 254-327 (472)
293 2rpa_A Katanin P60 ATPase-cont 32.1 31 0.001 25.9 2.8 25 373-397 16-40 (78)
294 4a1g_A Mitotic checkpoint seri 31.9 2.4E+02 0.0081 24.0 13.3 87 423-524 48-134 (152)
295 1z65_A PRPLP, prion-like prote 30.8 31 0.0011 20.3 2.0 16 117-133 4-19 (30)
296 2rpa_A Katanin P60 ATPase-cont 29.3 48 0.0016 24.9 3.4 28 492-519 13-40 (78)
297 3u84_A Menin; MLL, JUND, ledgf 29.2 1.7E+02 0.006 29.3 8.3 69 402-477 276-346 (550)
298 2w2u_A Hypothetical P60 katani 28.7 85 0.0029 23.7 4.9 24 409-432 25-48 (83)
299 3iqu_A 14-3-3 protein sigma; s 27.8 64 0.0022 29.8 4.8 48 492-539 9-57 (236)
300 4gq4_A Menin; tumor suppressor 27.6 2.9E+02 0.01 27.7 9.6 101 415-545 257-363 (489)
301 2v6y_A AAA family ATPase, P60 27.1 77 0.0026 23.9 4.4 23 410-432 18-40 (83)
302 2w2u_A Hypothetical P60 katani 26.3 87 0.003 23.6 4.5 19 501-519 29-47 (83)
303 3ubw_A 14-3-3E, 14-3-3 protein 25.7 66 0.0023 30.1 4.5 47 492-538 32-79 (261)
304 3mcx_A SUSD superfamily protei 25.2 1.5E+02 0.005 30.4 7.6 54 466-520 177-231 (477)
305 4ady_A RPN2, 26S proteasome re 25.2 1.1E+02 0.0038 34.4 7.0 58 371-431 415-482 (963)
306 3myv_A SUSD superfamily protei 25.0 1.2E+02 0.0042 30.7 6.9 34 487-520 186-219 (454)
307 2v6y_A AAA family ATPase, P60 24.3 99 0.0034 23.3 4.5 19 501-519 21-39 (83)
308 2br9_A 14-3-3E, 14-3-3 protein 24.3 68 0.0023 29.6 4.3 47 492-538 6-53 (234)
309 3u84_A Menin; MLL, JUND, ledgf 23.9 5.7E+02 0.019 25.7 11.9 67 368-434 276-349 (550)
310 4a5x_A MITD1, MIT domain-conta 23.8 1.2E+02 0.004 23.1 4.9 25 408-432 21-45 (86)
311 3kez_A Putative sugar binding 22.8 1.3E+02 0.0046 30.5 6.7 34 487-520 192-225 (461)
312 4a1g_A Mitotic checkpoint seri 22.3 2.7E+02 0.0092 23.6 7.4 57 374-432 72-130 (152)
313 2cwy_A Hypothetical protein TT 22.2 1E+02 0.0035 23.9 4.3 59 455-519 7-67 (94)
314 1o9d_A 14-3-3-like protein C; 21.8 86 0.0029 29.4 4.5 47 492-538 9-58 (260)
315 2wpv_A GET4, UPF0363 protein Y 21.8 5.3E+02 0.018 24.6 12.3 23 451-473 136-158 (312)
316 2br9_A 14-3-3E, 14-3-3 protein 21.3 2.5E+02 0.0085 25.7 7.5 54 420-477 147-201 (234)
317 2yhe_A SEC-alkyl sulfatase; hy 26.8 20 0.00068 38.9 0.0 53 370-422 462-514 (668)
318 4a5x_A MITD1, MIT domain-conta 20.7 1.3E+02 0.0044 22.8 4.5 25 495-519 20-44 (86)
319 2p58_C Putative type III secre 20.0 3.3E+02 0.011 21.6 9.6 49 455-516 46-94 (116)
No 1
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.74 E-value=2.6e-17 Score=183.42 Aligned_cols=148 Identities=22% Similarity=0.167 Sum_probs=140.4
Q ss_pred ChHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHH
Q 008887 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDL 447 (550)
Q Consensus 368 ~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~ 447 (550)
+++.+.++|..+..+|++++|+++|+++++.+|++..+++++|.+|.+.|++++|+++|++++++ +|++.
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l-----~P~~~----- 77 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI-----SPTFA----- 77 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCH-----
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCH-----
Confidence 56788899999999999999999999999999999999999999999999999999999999999 88887
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHH
Q 008887 448 LIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNEL 527 (550)
Q Consensus 448 l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~ 527 (550)
.+++++|.++.++|++++|++.|+++++++ |++. .++.++|.+|.++|++++|++.|+++++++|++.++
T Consensus 78 --~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~-P~~~-------~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a 147 (723)
T 4gyw_A 78 --DAYSNMGNTLKEMQDVQGALQCYTRAIQIN-PAFA-------DAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDA 147 (723)
T ss_dssp --HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCH-------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHH
T ss_pred --HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHH
Confidence 388999999999999999999999999998 9887 999999999999999999999999999999999999
Q ss_pred HHHHHhhH
Q 008887 528 LEQLENND 535 (550)
Q Consensus 528 ~~~l~~~~ 535 (550)
+.++....
T Consensus 148 ~~~L~~~l 155 (723)
T 4gyw_A 148 YCNLAHCL 155 (723)
T ss_dssp HHHHHHHH
T ss_pred HhhhhhHH
Confidence 88877643
No 2
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.73 E-value=2.1e-18 Score=154.26 Aligned_cols=142 Identities=20% Similarity=0.189 Sum_probs=127.5
Q ss_pred HHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHH
Q 008887 374 ALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQ 453 (550)
Q Consensus 374 ~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~ 453 (550)
.+|..+..+|++++|++.+++++..+|+++.+++.+|.+|.+.|++++|+++|++++++ +|+++ .+++
T Consensus 2 ~LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~-----~p~~~-------~a~~ 69 (150)
T 4ga2_A 2 PLGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV-----QERDP-------KAHR 69 (150)
T ss_dssp -----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCH-------HHHH
T ss_pred HhHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCH-------HHHH
Confidence 36777888899999999999999999999999999999999999999999999999999 88887 3889
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHH-HHHHHHcCCCcHHHHHHHH
Q 008887 454 WSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKY-LRLAAAHNPQYNELLEQLE 532 (550)
Q Consensus 454 ~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~-l~~al~~~p~~~~~~~~l~ 532 (550)
++|.++...|++++|+..|+++++++ |+++ .++..+|.+|.+.|++++|.+. ++++++++|+++.++...+
T Consensus 70 ~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~-------~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~ 141 (150)
T 4ga2_A 70 FLGLLYELEENTDKAVECYRRSVELN-PTQK-------DLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKE 141 (150)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCH-------HHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHhC-CCCH-------HHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHH
Confidence 99999999999999999999999998 9888 9999999999999999887765 5899999999999887776
Q ss_pred hhH
Q 008887 533 NND 535 (550)
Q Consensus 533 ~~~ 535 (550)
++.
T Consensus 142 ~ll 144 (150)
T 4ga2_A 142 QLL 144 (150)
T ss_dssp HHH
T ss_pred HHH
Confidence 643
No 3
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.72 E-value=1.5e-16 Score=151.13 Aligned_cols=146 Identities=20% Similarity=0.255 Sum_probs=132.6
Q ss_pred ChHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHH
Q 008887 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDL 447 (550)
Q Consensus 368 ~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~ 447 (550)
+++.++.+|..+...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+.+|++++++ +|++. .
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~-----~P~~~-~--- 74 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVAR-----TPRYL-G--- 74 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCH-H---
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCcH-H---
Confidence 56788899999999999999999999999999999999999999999999999999999999999 88887 3
Q ss_pred HHHHHHHHHHHHHHh-----------cCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHH
Q 008887 448 LIVASQWSGVACIRQ-----------EKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRL 516 (550)
Q Consensus 448 l~~a~~~lg~~~~~~-----------g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~ 516 (550)
+++++|.++... |++++|++.|+++++.+ |++. .++..+|.+|...|++++|++.|++
T Consensus 75 ---a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~-------~~~~~lg~~~~~~g~~~~A~~~~~~ 143 (217)
T 2pl2_A 75 ---GYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYA-------PLHLQRGLVYALLGERDKAEASLKQ 143 (217)
T ss_dssp ---HHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCH-------HHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccH-------HHHHHHHHHHHHcCChHHHHHHHHH
Confidence 788999999999 99999999999999998 9887 8888888888888888888888888
Q ss_pred HHHcCCCcHHHHHHHHhh
Q 008887 517 AAAHNPQYNELLEQLENN 534 (550)
Q Consensus 517 al~~~p~~~~~~~~l~~~ 534 (550)
+++++ ++...+..+...
T Consensus 144 al~~~-~~~~~~~~la~~ 160 (217)
T 2pl2_A 144 ALALE-DTPEIRSALAEL 160 (217)
T ss_dssp HHHHC-CCHHHHHHHHHH
T ss_pred HHhcc-cchHHHHHHHHH
Confidence 88888 777776666553
No 4
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.72 E-value=2.8e-16 Score=144.22 Aligned_cols=147 Identities=20% Similarity=0.252 Sum_probs=125.6
Q ss_pred ChHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHH
Q 008887 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDL 447 (550)
Q Consensus 368 ~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~ 447 (550)
++...+++|..+...|++++|++.|+++++.+|+++.++..+|.+|...|++++|++.+++++.. +|.+. .
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~-----~~~~~-~--- 74 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL-----DTTSA-E--- 74 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CCCCH-H---
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-----CchhH-H---
Confidence 45567799999999999999999999999999999999999999999999999999999999999 77776 2
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHH
Q 008887 448 LIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNEL 527 (550)
Q Consensus 448 l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~ 527 (550)
++..+|.++...+++++|.+.++++++.. |++. .++..+|.+|.++|++++|++.|+++++++|++..+
T Consensus 75 ---~~~~~~~~~~~~~~~~~a~~~~~~a~~~~-~~~~-------~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~ 143 (184)
T 3vtx_A 75 ---AYYILGSANFMIDEKQAAIDALQRAIALN-TVYA-------DAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRA 143 (184)
T ss_dssp ---HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCH-------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred ---HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccch-------HHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhH
Confidence 56677888888888888888888888876 7766 788888888888888888888888888888888877
Q ss_pred HHHHHhh
Q 008887 528 LEQLENN 534 (550)
Q Consensus 528 ~~~l~~~ 534 (550)
+..+...
T Consensus 144 ~~~lg~~ 150 (184)
T 3vtx_A 144 YQSIGLA 150 (184)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7766554
No 5
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.72 E-value=1.1e-16 Score=152.01 Aligned_cols=147 Identities=18% Similarity=0.193 Sum_probs=137.9
Q ss_pred CChHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHHHhhh
Q 008887 367 LTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQK-----------GLLEEAVEYLECAISKLFL 435 (550)
Q Consensus 367 l~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~-----------g~~~eA~~~~~~al~l~~~ 435 (550)
-+++.++.+|..+...|++++|+..|+++++.+|++..+++.+|.++... |++++|+..|++++++
T Consensus 37 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--- 113 (217)
T 2pl2_A 37 QDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERV--- 113 (217)
T ss_dssp SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH---
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh---
Confidence 47788889999999999999999999999999999999999999999999 9999999999999999
Q ss_pred cCCCCChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHH
Q 008887 436 AGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLR 515 (550)
Q Consensus 436 ~~~p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~ 515 (550)
+|++. .+++++|.++...|++++|++.|+++++.+ +++ .++..+|.+|...|++++|+..|+
T Consensus 114 --~P~~~-------~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~-------~~~~~la~~~~~~g~~~~A~~~~~ 175 (217)
T 2pl2_A 114 --NPRYA-------PLHLQRGLVYALLGERDKAEASLKQALALE--DTP-------EIRSALAELYLSMGRLDEALAQYA 175 (217)
T ss_dssp --CTTCH-------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred --CcccH-------HHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cch-------HHHHHHHHHHHHcCCHHHHHHHHH
Confidence 88887 378899999999999999999999999985 555 899999999999999999999999
Q ss_pred HHHHcCCCcHHHHHHHHhh
Q 008887 516 LAAAHNPQYNELLEQLENN 534 (550)
Q Consensus 516 ~al~~~p~~~~~~~~l~~~ 534 (550)
++++.+|++...+..+..+
T Consensus 176 ~al~~~P~~~~~~~~la~~ 194 (217)
T 2pl2_A 176 KALEQAPKDLDLRVRYASA 194 (217)
T ss_dssp HHHHHSTTCHHHHHHHHHH
T ss_pred HHHHhCCCChHHHHHHHHH
Confidence 9999999999988877663
No 6
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.69 E-value=2.4e-16 Score=136.46 Aligned_cols=120 Identities=14% Similarity=0.153 Sum_probs=107.8
Q ss_pred HHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Q 008887 394 LALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLE 473 (550)
Q Consensus 394 ~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~ 473 (550)
++..++|+.++++..+|..|++.|+|++|+++|++++++ +|.++ .+++++|.++..+|++++|++.|+
T Consensus 4 r~a~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~-----~p~~~-------~~~~~~~~~~~~~~~~~~A~~~~~ 71 (126)
T 4gco_A 4 RLAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKR-----DPENA-------ILYSNRAACLTKLMEFQRALDDCD 71 (126)
T ss_dssp ---CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCH-------HHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCH-------HHHHHHhhHHHhhccHHHHHHHHH
Confidence 344578999999999999999999999999999999999 88877 378899999999999999999999
Q ss_pred HHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHHHHHHHh
Q 008887 474 RIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQLEN 533 (550)
Q Consensus 474 ~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~l~~ 533 (550)
++++++ |++. .+++.+|.+|..+|++++|++.|+++++++|++.+++..+.+
T Consensus 72 ~al~~~-p~~~-------~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~ 123 (126)
T 4gco_A 72 TCIRLD-SKFI-------KGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRN 123 (126)
T ss_dssp HHHHHC-TTCH-------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHhh-hhhh-------HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHH
Confidence 999998 8877 899999999999999999999999999999999999888766
No 7
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.69 E-value=4.7e-16 Score=148.02 Aligned_cols=156 Identities=16% Similarity=0.043 Sum_probs=141.3
Q ss_pred CChHHHHHHHHHHHHcCCCCChHHHHHHHHhhCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhH
Q 008887 367 LTPKELIALSVKFLSKGDKERPIPLLQLALNKEP-DNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAI 445 (550)
Q Consensus 367 l~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p-~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~ 445 (550)
.+++.++..|..++..|++++|++.|+++++.+| .+..+++.+|.++...|++++|+++|+++++. +|.+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-----~p~~~--- 76 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKK-----NYNLA--- 76 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-----TCSHH---
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHh-----CcchH---
Confidence 4778899999999999999999999999999999 89999999999999999999999999999999 77755
Q ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--
Q 008887 446 DLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQ-- 523 (550)
Q Consensus 446 ~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~-- 523 (550)
.+++.+|.++..+|++++|++.++++++.. |++.........++..+|.++...|++++|++.|+++++++|+
T Consensus 77 ----~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~ 151 (228)
T 4i17_A 77 ----NAYIGKSAAYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKW 151 (228)
T ss_dssp ----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHH
T ss_pred ----HHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcc
Confidence 378899999999999999999999999998 8776444445577999999999999999999999999999999
Q ss_pred cHHHHHHHHhhH
Q 008887 524 YNELLEQLENND 535 (550)
Q Consensus 524 ~~~~~~~l~~~~ 535 (550)
+..++..+....
T Consensus 152 ~~~~~~~l~~~~ 163 (228)
T 4i17_A 152 KTDALYSLGVLF 163 (228)
T ss_dssp HHHHHHHHHHHH
T ss_pred cHHHHHHHHHHH
Confidence 888887776543
No 8
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.68 E-value=9.5e-16 Score=145.92 Aligned_cols=153 Identities=16% Similarity=0.130 Sum_probs=141.5
Q ss_pred ChHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHH
Q 008887 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDL 447 (550)
Q Consensus 368 ~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~ 447 (550)
+....+.+|..+...|++++|+..|+++++.+|++..++..+|.+|...|++++|+++++++++. +|.++.....
T Consensus 41 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~~~~ 115 (228)
T 4i17_A 41 DSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAAYRDMKNNQEYIATLTEGIKA-----VPGNATIEKL 115 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----STTCHHHHHH
T ss_pred CcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHcccHHHHHHHHHHHHHH-----CCCcHHHHHH
Confidence 44567789999999999999999999999999999999999999999999999999999999999 8888865555
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCC--CccccccchhHHHHHHHHHHhcCCH------------------
Q 008887 448 LIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPE--EPKSKAHYYDGLVVLASALCNVGRN------------------ 507 (550)
Q Consensus 448 l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~--~~~~~~~~~~~~~~La~~~~~~g~~------------------ 507 (550)
+..+++.+|.++...|++++|++.|+++++.+ |+ +. .++..+|.+|...|+.
T Consensus 116 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~-------~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 187 (228)
T 4i17_A 116 YAIYYLKEGQKFQQAGNIEKAEENYKHATDVT-SKKWKT-------DALYSLGVLFYNNGADVLRKATPLASSNKEKYAS 187 (228)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSS-CHHHHH-------HHHHHHHHHHHHHHHHHHHHHGGGTTTCHHHHHH
T ss_pred HHHHHHHHhHHHHHhccHHHHHHHHHHHHhcC-CCcccH-------HHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHH
Confidence 55689999999999999999999999999997 86 66 8999999999999998
Q ss_pred ---------HHHHHHHHHHHHcCCCcHHHHHHHHh
Q 008887 508 ---------AEAEKYLRLAAAHNPQYNELLEQLEN 533 (550)
Q Consensus 508 ---------~eA~~~l~~al~~~p~~~~~~~~l~~ 533 (550)
++|+.+++++++++|++.+....+.+
T Consensus 188 ~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~ 222 (228)
T 4i17_A 188 EKAKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQ 222 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHH
Confidence 99999999999999999998888776
No 9
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.67 E-value=9.1e-16 Score=144.68 Aligned_cols=152 Identities=9% Similarity=0.095 Sum_probs=128.0
Q ss_pred ChHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHH----------------HHHHHHHcCCHHHHHHHHHHHHH
Q 008887 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALIL----------------MGQTQLQKGLLEEAVEYLECAIS 431 (550)
Q Consensus 368 ~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~----------------lg~~~~~~g~~~eA~~~~~~al~ 431 (550)
+++.++..|..++..|++++|+..|+++++.+|+++.+++. +|.+|...|++++|+.+|+++++
T Consensus 3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 82 (208)
T 3urz_A 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ 82 (208)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 56788899999999999999999999999999999999999 99999999999999999999999
Q ss_pred HhhhcCCCCChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchh-------------------
Q 008887 432 KLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYD------------------- 492 (550)
Q Consensus 432 l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~------------------- 492 (550)
+ +|.+. .+++++|.++...|++++|++.|+++++++ |+++........
T Consensus 83 ~-----~p~~~-------~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~ 149 (208)
T 3urz_A 83 K-----APNNV-------DCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAEQEKKKLETDYKK 149 (208)
T ss_dssp H-----CTTCH-------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred H-----CCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 9 88887 388899999999999999999999999998 988732221111
Q ss_pred ---------HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHHHHHHHh
Q 008887 493 ---------GLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQLEN 533 (550)
Q Consensus 493 ---------~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~l~~ 533 (550)
+++.+|.++...|++++|+.+|+++++++|+.. ....+.+
T Consensus 150 ~~~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~-~~~~l~~ 198 (208)
T 3urz_A 150 LSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTE-AQKTLDK 198 (208)
T ss_dssp --CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCHH-HHHHHHH
T ss_pred HhCCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCHH-HHHHHHH
Confidence 223344455556789999999999999999854 4444444
No 10
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.66 E-value=1e-15 Score=158.24 Aligned_cols=150 Identities=11% Similarity=0.016 Sum_probs=138.1
Q ss_pred ChHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHhhhcCCCCChhhHH
Q 008887 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGL-LEEAVEYLECAISKLFLAGHPTEPEAID 446 (550)
Q Consensus 368 ~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~-~~eA~~~~~~al~l~~~~~~p~~~~~~~ 446 (550)
.++.+..+|..+...|++++|++.|+++++.+|++..+|+.+|.++...|+ +++|+++|++++++ +|.+.
T Consensus 96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l-----~P~~~---- 166 (382)
T 2h6f_A 96 FRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEE-----QPKNY---- 166 (382)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH-----CTTCH----
T ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHH-----CCCCH----
Confidence 345566899999999999999999999999999999999999999999997 99999999999999 88887
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHH
Q 008887 447 LLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNE 526 (550)
Q Consensus 447 ~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~ 526 (550)
.+|+++|.++...|++++|++.|+++++++ |++. .+|+++|.++..+|++++|+++|+++++++|++..
T Consensus 167 ---~a~~~~g~~~~~~g~~~eAl~~~~kal~ld-P~~~-------~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~ 235 (382)
T 2h6f_A 167 ---QVWHHRRVLVEWLRDPSQELEFIADILNQD-AKNY-------HAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNS 235 (382)
T ss_dssp ---HHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCH-------HHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHH
T ss_pred ---HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-ccCH-------HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHH
Confidence 388999999999999999999999999998 9888 99999999999999999999999999999999999
Q ss_pred HHHHHHhhHHH
Q 008887 527 LLEQLENNDEE 537 (550)
Q Consensus 527 ~~~~l~~~~~~ 537 (550)
++..+..+...
T Consensus 236 a~~~lg~~l~~ 246 (382)
T 2h6f_A 236 VWNQRYFVISN 246 (382)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99888765444
No 11
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.66 E-value=1.4e-15 Score=139.54 Aligned_cols=139 Identities=17% Similarity=0.194 Sum_probs=131.6
Q ss_pred ChHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHH
Q 008887 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDL 447 (550)
Q Consensus 368 ~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~ 447 (550)
+++.+..+|..+...|++++|+..+++++..+|++..++..+|.++...+++++|.+.++++++. +|.+. .
T Consensus 38 ~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~-----~~~~~-~--- 108 (184)
T 3vtx_A 38 NVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSANFMIDEKQAAIDALQRAIAL-----NTVYA-D--- 108 (184)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCH-H---
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----Cccch-H---
Confidence 67788899999999999999999999999999999999999999999999999999999999999 88776 2
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHH
Q 008887 448 LIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNE 526 (550)
Q Consensus 448 l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~ 526 (550)
++..+|.++..+|++++|++.|+++++.+ |++. .++..+|.+|.++|++++|++.|+++++++|++..
T Consensus 109 ---~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~-------~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~a~ 176 (184)
T 3vtx_A 109 ---AYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFI-------RAYQSIGLAYEGKGLRDEAVKYFKKALEKEEKKAK 176 (184)
T ss_dssp ---HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCH-------HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTHHHHH
T ss_pred ---HHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhh-------hHHHHHHHHHHHCCCHHHHHHHHHHHHhCCccCHH
Confidence 77789999999999999999999999998 8887 99999999999999999999999999999998654
No 12
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.64 E-value=1.1e-15 Score=136.69 Aligned_cols=116 Identities=10% Similarity=0.019 Sum_probs=109.5
Q ss_pred HHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHHhcCHHHHH
Q 008887 390 PLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGI 469 (550)
Q Consensus 390 ~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~ 469 (550)
..++++++.+|+++.+++.+|.++.+.|++++|+++|++++++ +|.++ . +|+++|.++...|++++|+
T Consensus 23 ~~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~-----~P~~~-~------~~~~lg~~~~~~g~~~~Ai 90 (151)
T 3gyz_A 23 ATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIY-----DFYNV-D------YIMGLAAIYQIKEQFQQAA 90 (151)
T ss_dssp CCTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCH-H------HHHHHHHHHHHTTCHHHHH
T ss_pred CCHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCH-H------HHHHHHHHHHHHccHHHHH
Confidence 4467778899999999999999999999999999999999999 89887 3 8889999999999999999
Q ss_pred HHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcH
Q 008887 470 AHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYN 525 (550)
Q Consensus 470 ~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~ 525 (550)
+.|+++++++ |+++ .+++++|.+|.++|++++|+..|+++++++|+..
T Consensus 91 ~~~~~al~l~-P~~~-------~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 91 DLYAVAFALG-KNDY-------TPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHHHHHHHHS-SSCC-------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHHHHhhC-CCCc-------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 9999999998 9988 9999999999999999999999999999999875
No 13
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.62 E-value=1.9e-15 Score=134.67 Aligned_cols=126 Identities=18% Similarity=0.097 Sum_probs=113.9
Q ss_pred ChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHHhcCHH
Q 008887 387 RPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWE 466 (550)
Q Consensus 387 ~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~g~~~ 466 (550)
.+...|+++++.+|++..+++.+|.++...|++++|+..|+++++. +|.++ . +++++|.++...|+++
T Consensus 5 ~~~~~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~-----~p~~~-~------~~~~lg~~~~~~g~~~ 72 (148)
T 2vgx_A 5 SGGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVL-----DHYDS-R------FFLGLGACRQAMGQYD 72 (148)
T ss_dssp -CCCSHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCH-H------HHHHHHHHHHHTTCHH
T ss_pred chhhhHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHc-----CcccH-H------HHHHHHHHHHHHhhHH
Confidence 3445789999999999999999999999999999999999999999 88887 3 7889999999999999
Q ss_pred HHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHHHHHHH
Q 008887 467 EGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQLE 532 (550)
Q Consensus 467 eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~l~ 532 (550)
+|++.|+++++++ |+++ .+++.+|.+|...|++++|++.|+++++++|++++......
T Consensus 73 ~A~~~~~~al~l~-p~~~-------~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 130 (148)
T 2vgx_A 73 LAIHSYSYGAVMD-IXEP-------RFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXELST 130 (148)
T ss_dssp HHHHHHHHHHHHS-TTCT-------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGHHHHH
T ss_pred HHHHHHHHHHhcC-CCCc-------hHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcchHHHH
Confidence 9999999999998 9888 99999999999999999999999999999988766544333
No 14
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.62 E-value=1.2e-14 Score=141.46 Aligned_cols=153 Identities=14% Similarity=0.099 Sum_probs=134.2
Q ss_pred CChHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChh
Q 008887 367 LTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDN---INALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPE 443 (550)
Q Consensus 367 l~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~---~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~ 443 (550)
-+++.++.+|..++..|++++|+..|+++++.+|++ ..+++.+|.+|...|++++|+..|+++++. +|.++.
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~-----~p~~~~ 87 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQI-----YQIDPR 87 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCTT
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH-----CCCCch
Confidence 378899999999999999999999999999999999 899999999999999999999999999999 887663
Q ss_pred hHHHHHHHHHHHHHHHHH--------hcCHHHHHHHHHHHhcCCCCCCccccccchhHH--------------HHHHHHH
Q 008887 444 AIDLLIVASQWSGVACIR--------QEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGL--------------VVLASAL 501 (550)
Q Consensus 444 ~~~~l~~a~~~lg~~~~~--------~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~--------------~~La~~~ 501 (550)
.. .+++.+|.++.. .|++++|++.|+++++.. |++. ....+. +.+|.+|
T Consensus 88 ~~----~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-p~~~----~~~~a~~~~~~~~~~~~~~~~~la~~~ 158 (261)
T 3qky_A 88 VP----QAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY-PNHE----LVDDATQKIRELRAKLARKQYEAARLY 158 (261)
T ss_dssp HH----HHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC-TTCT----THHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hH----HHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC-cCch----hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 32 478889999999 999999999999999998 8776 111222 8899999
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCc---HHHHHHHHh
Q 008887 502 CNVGRNAEAEKYLRLAAAHNPQY---NELLEQLEN 533 (550)
Q Consensus 502 ~~~g~~~eA~~~l~~al~~~p~~---~~~~~~l~~ 533 (550)
.+.|++++|+..|+++++.+|+. .+++..+..
T Consensus 159 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~ 193 (261)
T 3qky_A 159 ERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMR 193 (261)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHH
Confidence 99999999999999999999984 445555544
No 15
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.62 E-value=4.9e-15 Score=128.13 Aligned_cols=113 Identities=12% Similarity=0.131 Sum_probs=105.8
Q ss_pred hHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHH
Q 008887 369 PKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLL 448 (550)
Q Consensus 369 ~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l 448 (550)
++.+.++|..++..|++++|++.|+++++.+|+++.+++++|.+|...|++++|++.|++++++ +|.+.
T Consensus 13 a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-----~p~~~------ 81 (126)
T 4gco_A 13 AQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRL-----DSKFI------ 81 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCH------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHh-----hhhhh------
Confidence 4456699999999999999999999999999999999999999999999999999999999999 88887
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHH
Q 008887 449 IVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASAL 501 (550)
Q Consensus 449 ~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~ 501 (550)
.+++++|.++..+|++++|++.|+++++++ |++. +++..++.|+
T Consensus 82 -~a~~~lg~~~~~~~~~~~A~~~~~~al~l~-P~~~-------~a~~~l~~~l 125 (126)
T 4gco_A 82 -KGYIRKAACLVAMREWSKAQRAYEDALQVD-PSNE-------EAREGVRNCL 125 (126)
T ss_dssp -HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCH-------HHHHHHHHHC
T ss_pred -HHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-cCCH-------HHHHHHHHhc
Confidence 388899999999999999999999999998 9888 8888888874
No 16
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.61 E-value=2e-15 Score=168.15 Aligned_cols=136 Identities=18% Similarity=0.137 Sum_probs=129.4
Q ss_pred ChHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHH
Q 008887 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDL 447 (550)
Q Consensus 368 ~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~ 447 (550)
+++.+.++|..+...|++++|++.|+++++++|+++.+++++|.+|...|++++|+++|++++++ +|++.
T Consensus 42 ~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l-----~P~~~----- 111 (723)
T 4gyw_A 42 FAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQI-----NPAFA----- 111 (723)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCH-----
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCH-----
Confidence 67788899999999999999999999999999999999999999999999999999999999999 88887
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 008887 448 LIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQ 523 (550)
Q Consensus 448 l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~ 523 (550)
.+++++|.++.++|++++|++.|+++++++ |++. .++.++|.+|..+|++++|.+.+++++++.|+
T Consensus 112 --~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~-------~a~~~L~~~l~~~g~~~~A~~~~~kal~l~~~ 177 (723)
T 4gyw_A 112 --DAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFP-------DAYCNLAHCLQIVCDWTDYDERMKKLVSIVAD 177 (723)
T ss_dssp --HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCH-------HHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCh-------HHHhhhhhHHHhcccHHHHHHHHHHHHHhChh
Confidence 388999999999999999999999999998 9888 99999999999999999999999999987644
No 17
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.59 E-value=5.4e-15 Score=152.87 Aligned_cols=148 Identities=10% Similarity=0.029 Sum_probs=137.0
Q ss_pred CChHHHHHHHHHHHHcCC-CCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhH
Q 008887 367 LTPKELIALSVKFLSKGD-KERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAI 445 (550)
Q Consensus 367 l~~~~l~~la~~~~~~g~-~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~ 445 (550)
-+...+..+|..+...|+ +++|+..|+++++.+|++..+|+++|.++...|++++|+.+|++++++ +|.+. .
T Consensus 129 ~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~l-----dP~~~-~- 201 (382)
T 2h6f_A 129 ANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQ-----DAKNY-H- 201 (382)
T ss_dssp TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH-----CTTCH-H-
T ss_pred cCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----CccCH-H-
Confidence 367788899999999997 999999999999999999999999999999999999999999999999 88887 3
Q ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHh-cCCHHHH-----HHHHHHHHH
Q 008887 446 DLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCN-VGRNAEA-----EKYLRLAAA 519 (550)
Q Consensus 446 ~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~-~g~~~eA-----~~~l~~al~ 519 (550)
+|+++|.++...|++++|+++|+++++++ |++. .+|.++|.++.. .|+.++| +++|+++++
T Consensus 202 -----a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~-------~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~ 268 (382)
T 2h6f_A 202 -----AWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNN-------SVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIK 268 (382)
T ss_dssp -----HHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCH-------HHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCH-------HHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999998 9888 999999999999 5555888 599999999
Q ss_pred cCCCcHHHHHHHHhh
Q 008887 520 HNPQYNELLEQLENN 534 (550)
Q Consensus 520 ~~p~~~~~~~~l~~~ 534 (550)
++|++..++..+...
T Consensus 269 l~P~~~~a~~~l~~l 283 (382)
T 2h6f_A 269 LVPHNESAWNYLKGI 283 (382)
T ss_dssp HSTTCHHHHHHHHHH
T ss_pred HCCCCHHHHHHHHHH
Confidence 999999988877653
No 18
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.58 E-value=6.3e-15 Score=129.87 Aligned_cols=124 Identities=15% Similarity=0.052 Sum_probs=109.4
Q ss_pred HHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHHhcCHHHHH
Q 008887 390 PLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGI 469 (550)
Q Consensus 390 ~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~ 469 (550)
..|+++++.+|++...++.+|..+...|++++|+..|+++++. +|.++ . +++.+|.++...|++++|+
T Consensus 5 ~~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~-----~p~~~-~------~~~~lg~~~~~~g~~~~A~ 72 (142)
T 2xcb_A 5 GTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCML-----DHYDA-R------YFLGLGACRQSLGLYEQAL 72 (142)
T ss_dssp ----CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCH-H------HHHHHHHHHHHTTCHHHHH
T ss_pred hhHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHh-----CCccH-H------HHHHHHHHHHHHhhHHHHH
Confidence 5678888899999999999999999999999999999999999 88877 3 7888999999999999999
Q ss_pred HHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHHHHHHHh
Q 008887 470 AHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQLEN 533 (550)
Q Consensus 470 ~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~l~~ 533 (550)
+.|+++++.+ |+++ .+++.+|.+|...|++++|+..|+++++++|++++......+
T Consensus 73 ~~~~~al~~~-p~~~-------~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~ 128 (142)
T 2xcb_A 73 QSYSYGALMD-INEP-------RFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAAR 128 (142)
T ss_dssp HHHHHHHHHC-TTCT-------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHH
T ss_pred HHHHHHHhcC-CCCc-------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHH
Confidence 9999999998 9888 999999999999999999999999999999887765554444
No 19
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.57 E-value=6.8e-14 Score=119.48 Aligned_cols=134 Identities=25% Similarity=0.365 Sum_probs=124.1
Q ss_pred HHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHH
Q 008887 370 KELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLI 449 (550)
Q Consensus 370 ~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~ 449 (550)
+.++.+|..+...|++++|+..++++++.+|++..++..+|.++...|++++|+++++++++. +|.+.
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-----~~~~~------- 69 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL-----DPRSA------- 69 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----CTTCH-------
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH-----CCCch-------
Confidence 356688999999999999999999999999999999999999999999999999999999999 77665
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 008887 450 VASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQ 523 (550)
Q Consensus 450 ~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~ 523 (550)
.+++.+|.++...|++++|++.++++++.. |.+. .++..+|.++...|++++|...++++++.+|+
T Consensus 70 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~-------~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 70 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSA-------EAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCH-------HHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCh-------HHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 267789999999999999999999999987 7766 89999999999999999999999999999886
No 20
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.57 E-value=1.4e-14 Score=154.30 Aligned_cols=147 Identities=15% Similarity=0.063 Sum_probs=136.3
Q ss_pred CChHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHHhhhcC
Q 008887 367 LTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQK---------GLLEEAVEYLECAISKLFLAG 437 (550)
Q Consensus 367 l~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~---------g~~~eA~~~~~~al~l~~~~~ 437 (550)
-+++.+..+|..+...|++++|+++|+++++.+|+ ..++..+|.+|... |++++|+++|++++++
T Consensus 135 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~----- 208 (474)
T 4abn_A 135 ELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM----- 208 (474)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH-----
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh-----
Confidence 36778889999999999999999999999999999 79999999999999 9999999999999999
Q ss_pred CCCChhhHHHHHHHHHHHHHHHHHh--------cCHHHHHHHHHHHhcCCCC---CCccccccchhHHHHHHHHHHhcCC
Q 008887 438 HPTEPEAIDLLIVASQWSGVACIRQ--------EKWEEGIAHLERIGNLKEP---EEPKSKAHYYDGLVVLASALCNVGR 506 (550)
Q Consensus 438 ~p~~~~~~~~l~~a~~~lg~~~~~~--------g~~~eA~~~~~~al~~~~p---~~~~~~~~~~~~~~~La~~~~~~g~ 506 (550)
+|.+. .+++++|.++... |++++|+++|+++++.+ | .++ .+++++|.+|...|+
T Consensus 209 ~p~~~-------~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~-------~~~~~lg~~~~~~g~ 273 (474)
T 4abn_A 209 DVLDG-------RSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVD-RKASSNP-------DLHLNRATLHKYEES 273 (474)
T ss_dssp CTTCH-------HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHC-GGGGGCH-------HHHHHHHHHHHHTTC
T ss_pred CCCCH-------HHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhC-CCcccCH-------HHHHHHHHHHHHcCC
Confidence 88877 3788999999999 99999999999999997 8 666 999999999999999
Q ss_pred HHHHHHHHHHHHHcCCCcHHHHHHHHhh
Q 008887 507 NAEAEKYLRLAAAHNPQYNELLEQLENN 534 (550)
Q Consensus 507 ~~eA~~~l~~al~~~p~~~~~~~~l~~~ 534 (550)
+++|.+.|+++++++|++..++..+..+
T Consensus 274 ~~~A~~~~~~al~l~p~~~~a~~~l~~~ 301 (474)
T 4abn_A 274 YGEALEGFSQAAALDPAWPEPQQREQQL 301 (474)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 9999999999999999999887776654
No 21
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.56 E-value=2e-13 Score=131.23 Aligned_cols=145 Identities=18% Similarity=0.195 Sum_probs=126.8
Q ss_pred hHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHH
Q 008887 369 PKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLL 448 (550)
Q Consensus 369 ~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l 448 (550)
++.++.+|..+...|++++|++.|+++++.+|++..++..+|.++...|++++|+++++++++. +|.+.
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~-----~~~~~------ 105 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALAS-----DSRNA------ 105 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCH------
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-----CcCcH------
Confidence 4456689999999999999999999999999999999999999999999999999999999999 77665
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHhc--CCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHH
Q 008887 449 IVASQWSGVACIRQEKWEEGIAHLERIGN--LKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNE 526 (550)
Q Consensus 449 ~~a~~~lg~~~~~~g~~~eA~~~~~~al~--~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~ 526 (550)
.++..+|.++...|++++|+++++++++ .. |.+. .++..+|.++...|++++|.+.++++++.+|++..
T Consensus 106 -~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~-------~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 176 (252)
T 2ho1_A 106 -RVLNNYGGFLYEQKRYEEAYQRLLEASQDTLY-PERS-------RVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPS 176 (252)
T ss_dssp -HHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTC-TTHH-------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHH
T ss_pred -HHHHHHHHHHHHHhHHHHHHHHHHHHHhCccC-cccH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHH
Confidence 2677899999999999999999999998 43 4444 78889999999999999999999999999998887
Q ss_pred HHHHHHh
Q 008887 527 LLEQLEN 533 (550)
Q Consensus 527 ~~~~l~~ 533 (550)
.+..+..
T Consensus 177 ~~~~la~ 183 (252)
T 2ho1_A 177 VALEMAD 183 (252)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7766554
No 22
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.56 E-value=1.4e-13 Score=131.23 Aligned_cols=156 Identities=15% Similarity=0.121 Sum_probs=130.4
Q ss_pred ChHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCCh---HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhh
Q 008887 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNI---NALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEA 444 (550)
Q Consensus 368 ~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~---~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~ 444 (550)
+++.++.+|..++..|++++|+..|+++++.+|++. .+++.+|.+|...|++++|++.|+++++. +|+++..
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~-----~P~~~~~ 77 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL-----NPTHPNI 77 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCTTH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH-----CcCCCcH
Confidence 677889999999999999999999999999998864 78999999999999999999999999999 8887743
Q ss_pred HHHHHHHHHHHHHHHHH------------------hcCHHHHHHHHHHHhcCCCCCCcccccc----------chhHHHH
Q 008887 445 IDLLIVASQWSGVACIR------------------QEKWEEGIAHLERIGNLKEPEEPKSKAH----------YYDGLVV 496 (550)
Q Consensus 445 ~~~l~~a~~~lg~~~~~------------------~g~~~eA~~~~~~al~~~~p~~~~~~~~----------~~~~~~~ 496 (550)
. .+++.+|.++.. .|++++|++.|+++++.. |++...... .......
T Consensus 78 ~----~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-P~~~~a~~a~~~l~~~~~~~~~~~~~ 152 (225)
T 2yhc_A 78 D----YVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY-PNSQYTTDATKRLVFLKDRLAKYEYS 152 (225)
T ss_dssp H----HHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC-TTCTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred H----HHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC-cCChhHHHHHHHHHHHHHHHHHHHHH
Confidence 2 367788988876 579999999999999998 887622110 0122267
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCcHH---HHHHHHh
Q 008887 497 LASALCNVGRNAEAEKYLRLAAAHNPQYNE---LLEQLEN 533 (550)
Q Consensus 497 La~~~~~~g~~~eA~~~l~~al~~~p~~~~---~~~~l~~ 533 (550)
+|.+|.+.|++++|+..|+++++..|+... ++..+..
T Consensus 153 ~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~ 192 (225)
T 2yhc_A 153 VAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMEN 192 (225)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHH
T ss_pred HHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHH
Confidence 899999999999999999999999999863 4444444
No 23
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.56 E-value=8e-14 Score=143.40 Aligned_cols=147 Identities=19% Similarity=0.169 Sum_probs=135.1
Q ss_pred ChHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHH
Q 008887 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDL 447 (550)
Q Consensus 368 ~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~ 447 (550)
++.....+|..+...|++++|++.|+++++.+|+++.++..+|.++...|++++|+++|+++++. +|.+. .
T Consensus 236 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-----~p~~~-~--- 306 (388)
T 1w3b_A 236 HAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRL-----CPTHA-D--- 306 (388)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH-----CTTCH-H---
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CcccH-H---
Confidence 56677799999999999999999999999999999999999999999999999999999999999 78776 2
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHH
Q 008887 448 LIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNEL 527 (550)
Q Consensus 448 l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~ 527 (550)
++..+|.++...|++++|++.++++++.. |++. .++..+|.+|.+.|++++|.+.|+++++++|++..+
T Consensus 307 ---~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a 375 (388)
T 1w3b_A 307 ---SLNNLANIKREQGNIEEAVRLYRKALEVF-PEFA-------AAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADA 375 (388)
T ss_dssp ---HHHHHHHHHHTTTCHHHHHHHHHHHTTSC-TTCH-------HHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHH
T ss_pred ---HHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH
Confidence 67789999999999999999999999997 8777 899999999999999999999999999999999998
Q ss_pred HHHHHhh
Q 008887 528 LEQLENN 534 (550)
Q Consensus 528 ~~~l~~~ 534 (550)
+..+...
T Consensus 376 ~~~lg~~ 382 (388)
T 1w3b_A 376 YSNMGNT 382 (388)
T ss_dssp HHHHHHH
T ss_pred HHhHHHH
Confidence 8888764
No 24
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.56 E-value=1.2e-14 Score=141.34 Aligned_cols=148 Identities=10% Similarity=0.029 Sum_probs=110.2
Q ss_pred ChHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHH
Q 008887 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDL 447 (550)
Q Consensus 368 ~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~ 447 (550)
+++.++..|..++..|++++|+..|+++++.+|++..+++.+|.+|...|++++|+++++++++. ..++..
T Consensus 2 n~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~---~~~~~~------ 72 (272)
T 3u4t_A 2 NDDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSK---VNATKA------ 72 (272)
T ss_dssp ---CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTT---SCTTTC------
T ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc---cCchhH------
Confidence 44566778888888888888888888888888888888888888888888888888888888764 011111
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHH
Q 008887 448 LIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNEL 527 (550)
Q Consensus 448 l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~ 527 (550)
...++..+|.++...|++++|+++|+++++.. |.+. .++..+|.+|...|++++|+..++++++.+|++...
T Consensus 73 ~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~-~~~~-------~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 144 (272)
T 3u4t_A 73 KSADFEYYGKILMKKGQDSLAIQQYQAAVDRD-TTRL-------DMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKV 144 (272)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCT-------HHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHH
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC-cccH-------HHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHH
Confidence 11256678888888888888888888888876 7666 778888888888888888888888888887777776
Q ss_pred HHHHH
Q 008887 528 LEQLE 532 (550)
Q Consensus 528 ~~~l~ 532 (550)
+..+.
T Consensus 145 ~~~l~ 149 (272)
T 3u4t_A 145 FYELG 149 (272)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66655
No 25
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.56 E-value=8.4e-14 Score=132.60 Aligned_cols=146 Identities=13% Similarity=0.144 Sum_probs=133.8
Q ss_pred ChHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHH
Q 008887 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDL 447 (550)
Q Consensus 368 ~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~ 447 (550)
++.....+|..+...|++++|++.++++++.+|++..++..+|.++...|++++|+++++++++. +|.+.
T Consensus 90 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-----~~~~~----- 159 (243)
T 2q7f_A 90 AATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVEL-----NENDT----- 159 (243)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH-----CTTCH-----
T ss_pred chHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh-----CCccH-----
Confidence 45567789999999999999999999999999999999999999999999999999999999999 77665
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHH
Q 008887 448 LIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNEL 527 (550)
Q Consensus 448 l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~ 527 (550)
.+++.+|.++...|++++|++.++++++.. |++. .++..+|.+|...|++++|...++++++.+|++...
T Consensus 160 --~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~-------~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 229 (243)
T 2q7f_A 160 --EARFQFGMCLANEGMLDEALSQFAAVTEQD-PGHA-------DAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLA 229 (243)
T ss_dssp --HHHHHHHHHHHHHTCCHHHHHHHHHHHHHC-TTCH-------HHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHH
T ss_pred --HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccH-------HHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHH
Confidence 267789999999999999999999999997 8776 899999999999999999999999999999999998
Q ss_pred HHHHHh
Q 008887 528 LEQLEN 533 (550)
Q Consensus 528 ~~~l~~ 533 (550)
+..+..
T Consensus 230 ~~~~~~ 235 (243)
T 2q7f_A 230 LHAKKL 235 (243)
T ss_dssp HHHHTC
T ss_pred HHHHHH
Confidence 887766
No 26
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.55 E-value=9.7e-15 Score=162.56 Aligned_cols=146 Identities=11% Similarity=0.017 Sum_probs=138.2
Q ss_pred ChHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHH
Q 008887 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDL 447 (550)
Q Consensus 368 ~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~ 447 (550)
+++.++.+|..+...|++++|++.|+++++.+|++..+++.+|.+|...|++++|++.|++++++ +|++.
T Consensus 432 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l-----~P~~~----- 501 (681)
T 2pzi_A 432 SVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDT-----FPGEL----- 501 (681)
T ss_dssp CSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----STTCS-----
T ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCh-----
Confidence 66788899999999999999999999999999999999999999999999999999999999999 88887
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHH
Q 008887 448 LIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNEL 527 (550)
Q Consensus 448 l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~ 527 (550)
.+++++|.++.++|++++ +++|+++++.+ |++. .+++++|.+|.++|++++|++.|+++++++|++..+
T Consensus 502 --~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~-------~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a 570 (681)
T 2pzi_A 502 --APKLALAATAELAGNTDE-HKFYQTVWSTN-DGVI-------SAAFGLARARSAEGDRVGAVRTLDEVPPTSRHFTTA 570 (681)
T ss_dssp --HHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCH-------HHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTHHHH
T ss_pred --HHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchH-------HHHHHHHHHHHHcCCHHHHHHHHHhhcccCcccHHH
Confidence 378899999999999999 99999999998 9888 999999999999999999999999999999999998
Q ss_pred HHHHHhh
Q 008887 528 LEQLENN 534 (550)
Q Consensus 528 ~~~l~~~ 534 (550)
+.++..+
T Consensus 571 ~~~~~~~ 577 (681)
T 2pzi_A 571 RLTSAVT 577 (681)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8776654
No 27
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.55 E-value=6.2e-14 Score=127.80 Aligned_cols=133 Identities=16% Similarity=0.127 Sum_probs=117.2
Q ss_pred HHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHH
Q 008887 379 FLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVA 458 (550)
Q Consensus 379 ~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~ 458 (550)
+...|++++|+..++++++.+|++..+++.+|.+|...|++++|+.+|+++++. +|.++ .++..+|.+
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~-----~p~~~-------~~~~~la~~ 87 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQL-----RGENA-------ELYAALATV 87 (177)
T ss_dssp CC-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----HCSCH-------HHHHHHHHH
T ss_pred hhhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCCCH-------HHHHHHHHH
Confidence 466789999999999999999999999999999999999999999999999999 77765 277789999
Q ss_pred -HHHhcCH--HHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHHHHHH
Q 008887 459 -CIRQEKW--EEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQL 531 (550)
Q Consensus 459 -~~~~g~~--~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~l 531 (550)
+...|++ ++|++.++++++.+ |++. .+++.+|.+|...|++++|...++++++.+|++......+
T Consensus 88 l~~~~~~~~~~~A~~~~~~al~~~-p~~~-------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 155 (177)
T 2e2e_A 88 LYYQASQHMTAQTRAMIDKALALD-SNEI-------TALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQLV 155 (177)
T ss_dssp HHHHTTTCCCHHHHHHHHHHHHHC-TTCH-------HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHHHHH
T ss_pred HHHhcCCcchHHHHHHHHHHHHhC-CCcH-------HHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHHHHH
Confidence 8899999 99999999999998 8877 8999999999999999999999999999999886544433
No 28
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.55 E-value=1.8e-13 Score=128.38 Aligned_cols=147 Identities=18% Similarity=0.219 Sum_probs=100.2
Q ss_pred hHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHH
Q 008887 369 PKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLL 448 (550)
Q Consensus 369 ~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l 448 (550)
+..+..+|..+...|++++|++.++++++.+|++..++..+|.++...|++++|+++++++++. +|.+.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-----~~~~~------ 76 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSI-----KPDSA------ 76 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCH------
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHh-----CCCCh------
Confidence 4455567777777777777777777777777777777777777777777777777777777777 55554
Q ss_pred HHHHHHHHHHHHHh-cCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHH
Q 008887 449 IVASQWSGVACIRQ-EKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNEL 527 (550)
Q Consensus 449 ~~a~~~lg~~~~~~-g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~ 527 (550)
.++..+|.++... |++++|++.++++++ . +.++ ....++..+|.++...|++++|+..++++++.+|++...
T Consensus 77 -~~~~~l~~~~~~~~~~~~~A~~~~~~~~~-~-~~~~----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 149 (225)
T 2vq2_A 77 -EINNNYGWFLCGRLNRPAESMAYFDKALA-D-PTYP----TPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPA 149 (225)
T ss_dssp -HHHHHHHHHHHTTTCCHHHHHHHHHHHHT-S-TTCS----CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHH
T ss_pred -HHHHHHHHHHHHhcCcHHHHHHHHHHHHc-C-cCCc----chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchH
Confidence 2555677777777 777777777777776 2 2222 222666777777777777777777777777777776665
Q ss_pred HHHHHh
Q 008887 528 LEQLEN 533 (550)
Q Consensus 528 ~~~l~~ 533 (550)
+..+..
T Consensus 150 ~~~la~ 155 (225)
T 2vq2_A 150 FKELAR 155 (225)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555444
No 29
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.55 E-value=1.1e-13 Score=125.30 Aligned_cols=143 Identities=16% Similarity=0.275 Sum_probs=99.8
Q ss_pred HHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHH
Q 008887 371 ELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIV 450 (550)
Q Consensus 371 ~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~ 450 (550)
.+..+|..+...|++++|+..++++++.+|++..++..+|.++...|++++|+++++++++. +|.+. .
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~-------~ 77 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLAD-----APDNV-------K 77 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCH-------H
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCCH-------H
Confidence 34466777777777777777777777777777777777777777777777777777777777 55554 2
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHHHHH
Q 008887 451 ASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQ 530 (550)
Q Consensus 451 a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~ 530 (550)
++..+|.++...|++++|+++++++++.. |.+. .++..+|.++...|++++|...++++++.+|++...+..
T Consensus 78 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~-------~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 149 (186)
T 3as5_A 78 VATVLGLTYVQVQKYDLAVPLLIKVAEAN-PINF-------NVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRA 149 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCH-------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcC-cHhH-------HHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHH
Confidence 55567777777777777777777777765 6555 667777777777777777777777777777776665555
Q ss_pred HHh
Q 008887 531 LEN 533 (550)
Q Consensus 531 l~~ 533 (550)
+..
T Consensus 150 la~ 152 (186)
T 3as5_A 150 IAF 152 (186)
T ss_dssp HHH
T ss_pred HHH
Confidence 444
No 30
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.55 E-value=1.8e-13 Score=130.21 Aligned_cols=147 Identities=16% Similarity=0.168 Sum_probs=133.3
Q ss_pred ChHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHH
Q 008887 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDL 447 (550)
Q Consensus 368 ~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~ 447 (550)
++..+..+|..+...|++++|+..++++++.+|++..++..+|.++...|++++|+++++++++. +|.+. .
T Consensus 56 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-----~~~~~-~--- 126 (243)
T 2q7f_A 56 DAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRA-----GMENG-D--- 126 (243)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----TCCSH-H---
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHh-----CCCCH-H---
Confidence 56677799999999999999999999999999999999999999999999999999999999999 77765 2
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHH
Q 008887 448 LIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNEL 527 (550)
Q Consensus 448 l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~ 527 (550)
++..+|.++...|++++|++.++++++.. |++. .++..+|.++...|++++|+..++++++.+|++...
T Consensus 127 ---~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~-------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 195 (243)
T 2q7f_A 127 ---LFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDT-------EARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADA 195 (243)
T ss_dssp ---HHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCH-------HHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHH
T ss_pred ---HHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHH
Confidence 67789999999999999999999999997 8776 899999999999999999999999999999999887
Q ss_pred HHHHHhh
Q 008887 528 LEQLENN 534 (550)
Q Consensus 528 ~~~l~~~ 534 (550)
+..+...
T Consensus 196 ~~~la~~ 202 (243)
T 2q7f_A 196 FYNAGVT 202 (243)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7766653
No 31
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.54 E-value=1.6e-13 Score=124.30 Aligned_cols=139 Identities=22% Similarity=0.256 Sum_probs=128.6
Q ss_pred ChHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHH
Q 008887 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDL 447 (550)
Q Consensus 368 ~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~ 447 (550)
++.....+|..+...|++++|+..++++++.+|++..++..+|.++...|++++|.++++++++. +|.+.
T Consensus 41 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-----~~~~~----- 110 (186)
T 3as5_A 41 DVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEA-----NPINF----- 110 (186)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----CTTCH-----
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc-----CcHhH-----
Confidence 45567799999999999999999999999999999999999999999999999999999999999 77765
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHH
Q 008887 448 LIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNE 526 (550)
Q Consensus 448 l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~ 526 (550)
.++..+|.++...|++++|+++++++++.. |.+. .++..+|.++...|++++|...++++++.+|++..
T Consensus 111 --~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~-------~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 179 (186)
T 3as5_A 111 --NVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEG-------KVHRAIAFSYEQMGRHEEALPHFKKANELDEGASV 179 (186)
T ss_dssp --HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCH-------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCCCG
T ss_pred --HHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccch-------HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchh
Confidence 267789999999999999999999999997 8776 89999999999999999999999999999887653
No 32
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.54 E-value=8.7e-14 Score=133.46 Aligned_cols=145 Identities=19% Similarity=0.188 Sum_probs=133.3
Q ss_pred hHHHHHHHHHHHHcCCCCChHHHHHHHHh--------------------------hCCCChHHHHHHHHHHHHcCCHHHH
Q 008887 369 PKELIALSVKFLSKGDKERPIPLLQLALN--------------------------KEPDNINALILMGQTQLQKGLLEEA 422 (550)
Q Consensus 369 ~~~l~~la~~~~~~g~~~~A~~~~~~aL~--------------------------~~p~~~~a~~~lg~~~~~~g~~~eA 422 (550)
+..+..+|..+...|++++|+..++++++ .+|++..++..+|.++...|++++|
T Consensus 79 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A 158 (258)
T 3uq3_A 79 SKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNA 158 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHH
Confidence 45667999999999999999999999999 6777888999999999999999999
Q ss_pred HHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHH
Q 008887 423 VEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALC 502 (550)
Q Consensus 423 ~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~ 502 (550)
+++++++++. +|.++ .++..+|.++...|++++|++.++++++.. |++. .++..+|.+|.
T Consensus 159 ~~~~~~a~~~-----~~~~~-------~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~-------~~~~~l~~~~~ 218 (258)
T 3uq3_A 159 VKAYTEMIKR-----APEDA-------RGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFV-------RAYIRKATAQI 218 (258)
T ss_dssp HHHHHHHHHH-----CTTCH-------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCH-------HHHHHHHHHHH
T ss_pred HHHHHHHHhc-----CcccH-------HHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHH-------HHHHHHHHHHH
Confidence 9999999999 77776 377889999999999999999999999997 8777 89999999999
Q ss_pred hcCCHHHHHHHHHHHHHcC------CCcHHHHHHHHh
Q 008887 503 NVGRNAEAEKYLRLAAAHN------PQYNELLEQLEN 533 (550)
Q Consensus 503 ~~g~~~eA~~~l~~al~~~------p~~~~~~~~l~~ 533 (550)
..|++++|...++++++++ |++.+.+..+.+
T Consensus 219 ~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~~ 255 (258)
T 3uq3_A 219 AVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYK 255 (258)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHHHH
Confidence 9999999999999999999 998888887765
No 33
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.54 E-value=1.1e-13 Score=141.02 Aligned_cols=154 Identities=18% Similarity=0.167 Sum_probs=131.1
Q ss_pred ChHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHH
Q 008887 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDL 447 (550)
Q Consensus 368 ~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~ 447 (550)
++..+..+|..+...|++++|++.|+++++.+|++..++..+|.+|...|++++|+++|+++++. +|.+......
T Consensus 98 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~ 172 (365)
T 4eqf_A 98 DAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQ-----NPKYKYLVKN 172 (365)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CHHHHCC---
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHh-----CccchHHHhh
Confidence 45677899999999999999999999999999999999999999999999999999999999887 4332211000
Q ss_pred ---------------------------------------HHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccc
Q 008887 448 ---------------------------------------LIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKA 488 (550)
Q Consensus 448 ---------------------------------------l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~ 488 (550)
-..+++++|.++...|++++|++.|+++++.. |++.
T Consensus 173 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~---- 247 (365)
T 4eqf_A 173 KKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVR-PEDY---- 247 (365)
T ss_dssp ----------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCH----
T ss_pred hccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCH----
Confidence 01367789999999999999999999999997 8777
Q ss_pred cchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHHHHHHHhh
Q 008887 489 HYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQLENN 534 (550)
Q Consensus 489 ~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~l~~~ 534 (550)
.++..+|.+|...|++++|+..|+++++++|++...+..+...
T Consensus 248 ---~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 290 (365)
T 4eqf_A 248 ---SLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGIS 290 (365)
T ss_dssp ---HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHH
Confidence 8999999999999999999999999999999998887777654
No 34
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.54 E-value=5.2e-14 Score=139.66 Aligned_cols=151 Identities=17% Similarity=0.123 Sum_probs=135.7
Q ss_pred ChHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHH
Q 008887 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDL 447 (550)
Q Consensus 368 ~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~ 447 (550)
+++.++.+|..+...|++++|++.|+++++.+|+++.+++.+|.++...|++++|++.++++++. +|... .
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~-----~p~~~-~--- 186 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ-----DQDTR-Y--- 186 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG-----GCSHH-H---
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh-----hcchH-H---
Confidence 45677899999999999999999999999999999999999999999999999999999999888 66322 2
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCc--H
Q 008887 448 LIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQY--N 525 (550)
Q Consensus 448 l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~--~ 525 (550)
.....+..+...++.++|++.++++++.+ |++. .+++.+|.+|.+.|++++|++.|+++++.+|++ .
T Consensus 187 ---~~~~~~~~l~~~~~~~~a~~~l~~al~~~-P~~~-------~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~ 255 (287)
T 3qou_A 187 ---QGLVAQIELLXQAADTPEIQQLQQQVAEN-PEDA-------ALATQLALQLHQVGRNEEALELLFGHLRXDLTAADG 255 (287)
T ss_dssp ---HHHHHHHHHHHHHTSCHHHHHHHHHHHHC-TTCH-------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGG
T ss_pred ---HHHHHHHHHHhhcccCccHHHHHHHHhcC-CccH-------HHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccc
Confidence 45567788889999999999999999998 9888 999999999999999999999999999999999 7
Q ss_pred HHHHHHHhhHHHH
Q 008887 526 ELLEQLENNDEEF 538 (550)
Q Consensus 526 ~~~~~l~~~~~~~ 538 (550)
.++..+..+....
T Consensus 256 ~a~~~l~~~~~~~ 268 (287)
T 3qou_A 256 QTRXTFQEILAAL 268 (287)
T ss_dssp HHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHc
Confidence 7888877755544
No 35
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.53 E-value=2.6e-14 Score=152.24 Aligned_cols=146 Identities=13% Similarity=0.084 Sum_probs=136.6
Q ss_pred ChHHHHHHHHHHHHcCCC-CChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHH
Q 008887 368 TPKELIALSVKFLSKGDK-ERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAID 446 (550)
Q Consensus 368 ~~~~l~~la~~~~~~g~~-~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~ 446 (550)
++..++.+|..+...|++ ++|+++|+++++.+|++..+++.+|.+|...|++++|+++|++++++ +|+ . .
T Consensus 101 ~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~-----~p~-~-~-- 171 (474)
T 4abn_A 101 EAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTH-----CKN-K-V-- 171 (474)
T ss_dssp CHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT-----CCC-H-H--
T ss_pred hHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CCC-H-H--
Confidence 677888999999999999 99999999999999999999999999999999999999999999999 766 2 2
Q ss_pred HHHHHHHHHHHHHHHh---------cCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhc--------CCHHH
Q 008887 447 LLIVASQWSGVACIRQ---------EKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNV--------GRNAE 509 (550)
Q Consensus 447 ~l~~a~~~lg~~~~~~---------g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~--------g~~~e 509 (550)
++.++|.++... |++++|++.|+++++.+ |++. .+++.+|.+|... |++++
T Consensus 172 ----~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~-------~~~~~lg~~~~~~~~~~~~~~g~~~~ 239 (474)
T 4abn_A 172 ----SLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDG-------RSWYILGNAYLSLYFNTGQNPKISQQ 239 (474)
T ss_dssp ----HHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCH-------HHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred ----HHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCH-------HHHHHHHHHHHHHHHhhccccchHHH
Confidence 788999999999 99999999999999998 8888 9999999999999 99999
Q ss_pred HHHHHHHHHHcCC---CcHHHHHHHHhh
Q 008887 510 AEKYLRLAAAHNP---QYNELLEQLENN 534 (550)
Q Consensus 510 A~~~l~~al~~~p---~~~~~~~~l~~~ 534 (550)
|++.|+++++++| ++..++.++..+
T Consensus 240 A~~~~~~al~~~p~~~~~~~~~~~lg~~ 267 (474)
T 4abn_A 240 ALSAYAQAEKVDRKASSNPDLHLNRATL 267 (474)
T ss_dssp HHHHHHHHHHHCGGGGGCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcccCHHHHHHHHHH
Confidence 9999999999999 888888877664
No 36
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.53 E-value=1.6e-13 Score=133.46 Aligned_cols=150 Identities=14% Similarity=0.036 Sum_probs=129.3
Q ss_pred hHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCC---hHHHHHHHHHHHH--------cCCHHHHHHHHHHHHHHhhhcC
Q 008887 369 PKELIALSVKFLSKGDKERPIPLLQLALNKEPDN---INALILMGQTQLQ--------KGLLEEAVEYLECAISKLFLAG 437 (550)
Q Consensus 369 ~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~---~~a~~~lg~~~~~--------~g~~~eA~~~~~~al~l~~~~~ 437 (550)
++.++.+|..++..|++++|+..|+++++.+|++ ..+++.+|.++.. .|++++|+..|+++++.
T Consensus 52 ~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~----- 126 (261)
T 3qky_A 52 ADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR----- 126 (261)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH-----
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH-----
Confidence 6678899999999999999999999999998854 6789999999999 99999999999999999
Q ss_pred CCCChhhHHHH----------HHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhc---
Q 008887 438 HPTEPEAIDLL----------IVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNV--- 504 (550)
Q Consensus 438 ~p~~~~~~~~l----------~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~--- 504 (550)
+|.++...... ...++.+|.++...|++++|+..|+++++.. |++. ....+++.+|.+|..+
T Consensus 127 ~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-p~~~----~~~~a~~~l~~~~~~~g~~ 201 (261)
T 3qky_A 127 YPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAY-PDTP----WADDALVGAMRAYIAYAEQ 201 (261)
T ss_dssp CTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTST----THHHHHHHHHHHHHHHHHT
T ss_pred CcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCCc----hHHHHHHHHHHHHHHhccc
Confidence 88876433221 0112789999999999999999999999987 7654 3347999999999977
Q ss_pred -------CCHHHHHHHHHHHHHcCCCcHHHH
Q 008887 505 -------GRNAEAEKYLRLAAAHNPQYNELL 528 (550)
Q Consensus 505 -------g~~~eA~~~l~~al~~~p~~~~~~ 528 (550)
|++++|+..|+++++.+|++..+.
T Consensus 202 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 232 (261)
T 3qky_A 202 SVRARQPERYRRAVELYERLLQIFPDSPLLR 232 (261)
T ss_dssp SCGGGHHHHHHHHHHHHHHHHHHCTTCTHHH
T ss_pred chhhcccchHHHHHHHHHHHHHHCCCChHHH
Confidence 999999999999999999996543
No 37
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.53 E-value=5.5e-14 Score=125.27 Aligned_cols=117 Identities=13% Similarity=0.082 Sum_probs=108.4
Q ss_pred HHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHH
Q 008887 370 KELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLI 449 (550)
Q Consensus 370 ~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~ 449 (550)
...+.+|..|+..|++++|++.|+++++.+|+++.+++.+|.+|...|++++|+.+|++++++ +|+++ .
T Consensus 32 ~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~-----~p~~~-~----- 100 (150)
T 4ga2_A 32 IKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDKAVECYRRSVEL-----NPTQK-D----- 100 (150)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCH-H-----
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHh-----CCCCH-H-----
Confidence 345689999999999999999999999999999999999999999999999999999999999 88887 3
Q ss_pred HHHHHHHHHHHHhcCHHHHHHH-HHHHhcCCCCCCccccccchhHHHHHHHHHHhcCC
Q 008887 450 VASQWSGVACIRQEKWEEGIAH-LERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGR 506 (550)
Q Consensus 450 ~a~~~lg~~~~~~g~~~eA~~~-~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~ 506 (550)
+++++|.++.+.|++++|.+. ++++++++ |+++ .++..++.++...|+
T Consensus 101 -~~~~la~~~~~~~~~~~aa~~~~~~al~l~-P~~~-------~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 101 -LVLKIAELLCKNDVTDGRAKYWVERAAKLF-PGSP-------AVYKLKEQLLDCEGE 149 (150)
T ss_dssp -HHHHHHHHHHHHCSSSSHHHHHHHHHHHHS-TTCH-------HHHHHHHHHHHTCCC
T ss_pred -HHHHHHHHHHHcCChHHHHHHHHHHHHHhC-cCCH-------HHHHHHHHHHHHhCc
Confidence 788999999999999988776 59999998 9888 899999999998886
No 38
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.52 E-value=1.6e-13 Score=136.73 Aligned_cols=157 Identities=14% Similarity=0.145 Sum_probs=137.2
Q ss_pred hHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCC-hhhHHH
Q 008887 369 PKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTE-PEAIDL 447 (550)
Q Consensus 369 ~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~-~~~~~~ 447 (550)
......+|..+...|++++|++.++++++.+|++..++..+|.++...|++++|+++++++++.....+++.. +...
T Consensus 159 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~-- 236 (330)
T 3hym_B 159 HLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWE-- 236 (330)
T ss_dssp SHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCC--
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHH--
Confidence 4456689999999999999999999999999999999999999999999999999999999998422222211 1111
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHH
Q 008887 448 LIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNEL 527 (550)
Q Consensus 448 l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~ 527 (550)
.++..+|.++...|++++|+++++++++.. |++. .++..+|.+|...|++++|.++++++++++|++...
T Consensus 237 --~~~~~la~~~~~~g~~~~A~~~~~~a~~~~-~~~~-------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 306 (330)
T 3hym_B 237 --PLLNNLGHVCRKLKKYAEALDYHRQALVLI-PQNA-------STYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFS 306 (330)
T ss_dssp --HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCS-------HHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHH
T ss_pred --HHHHHHHHHHHHhcCHHHHHHHHHHHHhhC-ccch-------HHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHH
Confidence 277789999999999999999999999997 8877 999999999999999999999999999999999999
Q ss_pred HHHHHhhHHH
Q 008887 528 LEQLENNDEE 537 (550)
Q Consensus 528 ~~~l~~~~~~ 537 (550)
+..+....+.
T Consensus 307 ~~~l~~~~~~ 316 (330)
T 3hym_B 307 VTMLGHCIEM 316 (330)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHH
Confidence 8888775443
No 39
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.52 E-value=2.8e-13 Score=139.35 Aligned_cols=147 Identities=20% Similarity=0.143 Sum_probs=136.6
Q ss_pred ChHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHH
Q 008887 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDL 447 (550)
Q Consensus 368 ~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~ 447 (550)
+++.+..+|..+...|++++|+..|+++++.+|++..++..+|.++...|++++|++.|+++++. +|.++ .
T Consensus 202 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-----~p~~~-~--- 272 (388)
T 1w3b_A 202 FLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL-----QPHFP-D--- 272 (388)
T ss_dssp CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-----CSSCH-H---
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CCCCH-H---
Confidence 56677899999999999999999999999999999999999999999999999999999999999 88877 2
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHH
Q 008887 448 LIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNEL 527 (550)
Q Consensus 448 l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~ 527 (550)
++.++|.++...|++++|++.|+++++.. |++. .++..+|.++.+.|++++|++.++++++.+|++...
T Consensus 273 ---~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 341 (388)
T 1w3b_A 273 ---AYCNLANALKEKGSVAEAEDCYNTALRLC-PTHA-------DSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAA 341 (388)
T ss_dssp ---HHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCH-------HHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHH
T ss_pred ---HHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHH
Confidence 77889999999999999999999999997 8877 899999999999999999999999999999999888
Q ss_pred HHHHHhh
Q 008887 528 LEQLENN 534 (550)
Q Consensus 528 ~~~l~~~ 534 (550)
+..+...
T Consensus 342 ~~~l~~~ 348 (388)
T 1w3b_A 342 HSNLASV 348 (388)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7777654
No 40
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.52 E-value=1.5e-13 Score=131.71 Aligned_cols=159 Identities=12% Similarity=0.028 Sum_probs=130.3
Q ss_pred hHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHH
Q 008887 369 PKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLL 448 (550)
Q Consensus 369 ~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l 448 (550)
++.+..+|..++..|++++|+..|+++++.+ +++.++..+|.++...|++++|+++++++++. +|.........
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~-----~~~~~~~~~~~ 78 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQ-----GREMRADYKVI 78 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----HHHTTCCHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHh-----CcccccchHHH
Confidence 4567799999999999999999999999999 99999999999999999999999999999999 44432122222
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCc-------------------cccccchhHHHHHHHHHHhcCCHHH
Q 008887 449 IVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEP-------------------KSKAHYYDGLVVLASALCNVGRNAE 509 (550)
Q Consensus 449 ~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~-------------------~~~~~~~~~~~~La~~~~~~g~~~e 509 (550)
..+++.+|.++...|++++|+++++++++.. +... ...+....++..+|.++...|++++
T Consensus 79 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (258)
T 3uq3_A 79 SKSFARIGNAYHKLGDLKKTIEYYQKSLTEH-RTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPN 157 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHhcC-chhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHH
Confidence 3478899999999999999999999999953 3200 0111334788899999999999999
Q ss_pred HHHHHHHHHHcCCCcHHHHHHHHhh
Q 008887 510 AEKYLRLAAAHNPQYNELLEQLENN 534 (550)
Q Consensus 510 A~~~l~~al~~~p~~~~~~~~l~~~ 534 (550)
|+..++++++.+|++...+..+...
T Consensus 158 A~~~~~~a~~~~~~~~~~~~~l~~~ 182 (258)
T 3uq3_A 158 AVKAYTEMIKRAPEDARGYSNRAAA 182 (258)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhcCcccHHHHHHHHHH
Confidence 9999999999999888877666553
No 41
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.52 E-value=1.4e-13 Score=140.22 Aligned_cols=154 Identities=17% Similarity=0.122 Sum_probs=134.0
Q ss_pred ChHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHH
Q 008887 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDL 447 (550)
Q Consensus 368 ~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~ 447 (550)
+...++.+|..+...|++++|+..|+++++.+|++..+++.+|.+|...|++++|+++|++++++ +|.+.
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-----~p~~~----- 133 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLEL-----QPNNL----- 133 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCH-----
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-----CCCCH-----
Confidence 34467899999999999999999999999999999999999999999999999999999999999 78776
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccc-------------------------------------c-
Q 008887 448 LIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKA-------------------------------------H- 489 (550)
Q Consensus 448 l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~-------------------------------------~- 489 (550)
.+++.+|.++...|++++|++.|+++++.. |++..... .
T Consensus 134 --~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 210 (365)
T 4eqf_A 134 --KALMALAVSYTNTSHQQDACEALKNWIKQN-PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDM 210 (365)
T ss_dssp --HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSS
T ss_pred --HHHHHHHHHHHccccHHHHHHHHHHHHHhC-ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCc
Confidence 378889999999999999999999998876 54332211 1
Q ss_pred -chhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHHHHHHHhh
Q 008887 490 -YYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQLENN 534 (550)
Q Consensus 490 -~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~l~~~ 534 (550)
...++..+|.+|...|++++|++.|+++++.+|++...+..+...
T Consensus 211 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 256 (365)
T 4eqf_A 211 IDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGAT 256 (365)
T ss_dssp CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 347889999999999999999999999999999998888777654
No 42
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.51 E-value=3.2e-13 Score=129.70 Aligned_cols=146 Identities=19% Similarity=0.124 Sum_probs=111.6
Q ss_pred ChHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HhhhcCCCCChhhH
Q 008887 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAIS--KLFLAGHPTEPEAI 445 (550)
Q Consensus 368 ~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~--l~~~~~~p~~~~~~ 445 (550)
++..+..+|..+...|++++|++.++++++.+|++..++..+|.++...|++++|+++++++++ . +|.+.
T Consensus 70 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-----~~~~~--- 141 (252)
T 2ho1_A 70 SADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTL-----YPERS--- 141 (252)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTT-----CTTHH---
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCcc-----CcccH---
Confidence 3445667888888888888888888888888888888888888888888888888888888776 3 33322
Q ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcH
Q 008887 446 DLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYN 525 (550)
Q Consensus 446 ~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~ 525 (550)
.++..+|.++...|++++|+++++++++.. |.+. .++..+|.++...|++++|...++++++.+|++.
T Consensus 142 ----~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~-------~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~ 209 (252)
T 2ho1_A 142 ----RVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQP-------SVALEMADLLYKEREYVPARQYYDLFAQGGGQNA 209 (252)
T ss_dssp ----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCH-------HHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCH
T ss_pred ----HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH
Confidence 266678888888888888888888888876 6665 7788888888888888888888888888888777
Q ss_pred HHHHHHHh
Q 008887 526 ELLEQLEN 533 (550)
Q Consensus 526 ~~~~~l~~ 533 (550)
..+..+..
T Consensus 210 ~~~~~~~~ 217 (252)
T 2ho1_A 210 RSLLLGIR 217 (252)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 76655544
No 43
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.51 E-value=2e-13 Score=117.09 Aligned_cols=114 Identities=18% Similarity=0.117 Sum_probs=99.5
Q ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCC
Q 008887 401 DNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKE 480 (550)
Q Consensus 401 ~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~ 480 (550)
..+..+..+|..+...|++++|+++|+++++. +|.++ .+++++|.++...|++++|++.|+++++.+
T Consensus 2 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~-----~p~~~-------~~~~~~a~~~~~~~~~~~A~~~~~~al~~~- 68 (126)
T 3upv_A 2 MKAEEARLEGKEYFTKSDWPNAVKAYTEMIKR-----APEDA-------RGYSNRAAALAKLMSFPEAIADCNKAIEKD- 68 (126)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCH-------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred chHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-----CCCCh-------HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-
Confidence 45677889999999999999999999999999 77776 377889999999999999999999999987
Q ss_pred CCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC------CCcHHHHHHHHhh
Q 008887 481 PEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHN------PQYNELLEQLENN 534 (550)
Q Consensus 481 p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~------p~~~~~~~~l~~~ 534 (550)
|++. .+++.+|.++..+|++++|+..|+++++++ |++...+..+..+
T Consensus 69 p~~~-------~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~ 121 (126)
T 3upv_A 69 PNFV-------RAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKA 121 (126)
T ss_dssp TTCH-------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHH
T ss_pred CCcH-------HHHHHHHHHHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHH
Confidence 8777 889999999999999999999999999999 8888888877763
No 44
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.51 E-value=1.6e-13 Score=118.63 Aligned_cols=118 Identities=13% Similarity=0.105 Sum_probs=101.8
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCC
Q 008887 402 NINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEP 481 (550)
Q Consensus 402 ~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p 481 (550)
.+.++..+|.++++.|+|++|+++|++++++ +|.+. .+++++|.++..+|++++|++.|+++++++ |
T Consensus 7 ~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~-----~p~~~-------~~~~nlg~~~~~~~~~~~A~~~~~~al~~~-~ 73 (127)
T 4gcn_A 7 AAIAEKDLGNAAYKQKDFEKAHVHYDKAIEL-----DPSNI-------TFYNNKAAVYFEEKKFAECVQFCEKAVEVG-R 73 (127)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCH-------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-H
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCH-------HHHHhHHHHHHHhhhHHHHHHHHHHHHHhC-c
Confidence 4567889999999999999999999999999 88876 378899999999999999999999999987 7
Q ss_pred CCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHHHHHHHh
Q 008887 482 EEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQLEN 533 (550)
Q Consensus 482 ~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~l~~ 533 (550)
+....+.....++..+|.++..+|++++|++.|+++++.+|+ ++....+.+
T Consensus 74 ~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~-~~~~~~l~~ 124 (127)
T 4gcn_A 74 ETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRD-PELVKKVKE 124 (127)
T ss_dssp HTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCC-HHHHHHHHH
T ss_pred ccchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-HHHHHHHHH
Confidence 776666666789999999999999999999999999999886 444444443
No 45
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.50 E-value=5.8e-13 Score=133.95 Aligned_cols=152 Identities=18% Similarity=0.210 Sum_probs=135.9
Q ss_pred ChHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHH------------HHHHHHHHcCCHHHHHHHHHHHHHHhhh
Q 008887 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALI------------LMGQTQLQKGLLEEAVEYLECAISKLFL 435 (550)
Q Consensus 368 ~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~------------~lg~~~~~~g~~~eA~~~~~~al~l~~~ 435 (550)
++..+..+|..+...|++++|+..++++++.+|++..++. .+|.++...|++++|++.++++++.
T Consensus 187 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--- 263 (359)
T 3ieg_A 187 NTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--- 263 (359)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---
Confidence 5667789999999999999999999999999999988765 3488899999999999999999999
Q ss_pred cCCCCChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHH
Q 008887 436 AGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLR 515 (550)
Q Consensus 436 ~~~p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~ 515 (550)
+|.++. ....++..+|.++...|++++|++.++++++.+ |+++ .++..+|.+|...|++++|.+.|+
T Consensus 264 --~~~~~~---~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~-------~~~~~~~~~~~~~g~~~~A~~~~~ 330 (359)
T 3ieg_A 264 --EPSVAE---YTVRSKERICHCFSKDEKPVEAIRICSEVLQME-PDNV-------NALKDRAEAYLIEEMYDEAIQDYE 330 (359)
T ss_dssp --CCSSHH---HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCH-------HHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred --CCCchH---HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccH-------HHHHHHHHHHHHcCCHHHHHHHHH
Confidence 777652 222356789999999999999999999999997 8887 899999999999999999999999
Q ss_pred HHHHcCCCcHHHHHHHHhhH
Q 008887 516 LAAAHNPQYNELLEQLENND 535 (550)
Q Consensus 516 ~al~~~p~~~~~~~~l~~~~ 535 (550)
++++++|++...+..+.++.
T Consensus 331 ~a~~~~p~~~~~~~~l~~~~ 350 (359)
T 3ieg_A 331 AAQEHNENDQQIREGLEKAQ 350 (359)
T ss_dssp HHHTTCTTCHHHHHHHHHHH
T ss_pred HHHhcCCCChHHHHHHHHHH
Confidence 99999999999998888743
No 46
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.50 E-value=1.2e-13 Score=123.34 Aligned_cols=102 Identities=11% Similarity=0.110 Sum_probs=96.7
Q ss_pred ChHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHH
Q 008887 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDL 447 (550)
Q Consensus 368 ~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~ 447 (550)
+++.++.+|..++..|++++|+..|+++++.+|+++.+|+++|.+|...|++++|+++|++++++ +|.++ .
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l-----~P~~~-~--- 105 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFAL-----GKNDY-T--- 105 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----SSSCC-H---
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhh-----CCCCc-H---
Confidence 55677899999999999999999999999999999999999999999999999999999999999 99888 3
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCC
Q 008887 448 LIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPE 482 (550)
Q Consensus 448 l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~ 482 (550)
+++++|.++...|++++|++.|+++++.. |+
T Consensus 106 ---~~~~lg~~~~~lg~~~eA~~~~~~al~l~-~~ 136 (151)
T 3gyz_A 106 ---PVFHTGQCQLRLKAPLKAKECFELVIQHS-ND 136 (151)
T ss_dssp ---HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CC
T ss_pred ---HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CC
Confidence 88999999999999999999999999997 64
No 47
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.50 E-value=2.3e-13 Score=148.01 Aligned_cols=142 Identities=22% Similarity=0.160 Sum_probs=132.5
Q ss_pred CChHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHH
Q 008887 367 LTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAID 446 (550)
Q Consensus 367 l~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~ 446 (550)
-+++.+..+|..+...|++++|++.|+++++.+|++..+++.+|.+|...|++++|+++|+++++. +|.+.
T Consensus 21 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-----~p~~~---- 91 (568)
T 2vsy_A 21 QDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDA-----APEHP---- 91 (568)
T ss_dssp CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCH----
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-----CCCCH----
Confidence 367788899999999999999999999999999999999999999999999999999999999999 88776
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhc---CCHHHHHHHHHHHHHcCCC
Q 008887 447 LLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNV---GRNAEAEKYLRLAAAHNPQ 523 (550)
Q Consensus 447 ~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~---g~~~eA~~~l~~al~~~p~ 523 (550)
.+++++|.++...|++++|++.|+++++.+ |++. .++..+|.++... |++++|.+.++++++.+|+
T Consensus 92 ---~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~-------~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p~ 160 (568)
T 2vsy_A 92 ---GIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEP-------YITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVG 160 (568)
T ss_dssp ---HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCH-------HHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTCC
T ss_pred ---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCH-------HHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCCc
Confidence 378899999999999999999999999998 8877 8999999999999 9999999999999999988
Q ss_pred cHHHH
Q 008887 524 YNELL 528 (550)
Q Consensus 524 ~~~~~ 528 (550)
....+
T Consensus 161 ~~~~~ 165 (568)
T 2vsy_A 161 AVEPF 165 (568)
T ss_dssp CSCHH
T ss_pred ccChH
Confidence 65443
No 48
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.50 E-value=4.3e-13 Score=125.75 Aligned_cols=148 Identities=16% Similarity=0.143 Sum_probs=129.7
Q ss_pred ChHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHhhhcCCCCChhhHH
Q 008887 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQK-GLLEEAVEYLECAISKLFLAGHPTEPEAID 446 (550)
Q Consensus 368 ~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~-g~~~eA~~~~~~al~l~~~~~~p~~~~~~~ 446 (550)
++..+..+|..+...|++++|++.++++++.+|++..++..+|.++... |++++|+++++++++. ..+|...
T Consensus 41 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~---- 113 (225)
T 2vq2_A 41 NELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALAD---PTYPTPY---- 113 (225)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTS---TTCSCHH----
T ss_pred chHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcC---cCCcchH----
Confidence 3456778999999999999999999999999999999999999999999 9999999999999872 0033322
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CcH
Q 008887 447 LLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNP-QYN 525 (550)
Q Consensus 447 ~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p-~~~ 525 (550)
.+++.+|.++...|++++|++.++++++.. |++. .++..+|.++...|++++|...++++++.+| ++.
T Consensus 114 ---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~-------~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 182 (225)
T 2vq2_A 114 ---IANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFP-------PAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQA 182 (225)
T ss_dssp ---HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCH-------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCH
T ss_pred ---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCc-------hHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCH
Confidence 267789999999999999999999999997 8776 8999999999999999999999999999999 888
Q ss_pred HHHHHHHh
Q 008887 526 ELLEQLEN 533 (550)
Q Consensus 526 ~~~~~l~~ 533 (550)
..+..+..
T Consensus 183 ~~~~~~~~ 190 (225)
T 2vq2_A 183 DDLLLGWK 190 (225)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77655544
No 49
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.49 E-value=4.3e-13 Score=119.80 Aligned_cols=133 Identities=14% Similarity=0.068 Sum_probs=118.7
Q ss_pred ChHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHH
Q 008887 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDL 447 (550)
Q Consensus 368 ~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~ 447 (550)
.+..+..+|..++..|++++|+..|+++++.+|++..++..+|.++...|++++|+++++++++. +|.+.
T Consensus 12 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~-----~~~~~----- 81 (166)
T 1a17_A 12 RAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL-----DKKYI----- 81 (166)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCH-----
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CcccH-----
Confidence 34567799999999999999999999999999999999999999999999999999999999999 78776
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHH--HHHHHHhcCCHHHHHHHHHHHHHc
Q 008887 448 LIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVV--LASALCNVGRNAEAEKYLRLAAAH 520 (550)
Q Consensus 448 l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~--La~~~~~~g~~~eA~~~l~~al~~ 520 (550)
.+++.+|.++...|++++|+++|+++++.. |.+. .++.. ++..+...|++++|++.++++..+
T Consensus 82 --~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-p~~~-------~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 146 (166)
T 1a17_A 82 --KGYYRRAASNMALGKFRAALRDYETVVKVK-PHDK-------DAKMKYQECNKIVKQKAFERAIAGDEHKRSV 146 (166)
T ss_dssp --HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCH-------HHHHHHHHHHHHHHHHHHHHHHHcccchHHH
Confidence 378899999999999999999999999997 8776 66644 444488999999999999887654
No 50
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.49 E-value=8e-13 Score=134.20 Aligned_cols=154 Identities=18% Similarity=0.128 Sum_probs=134.3
Q ss_pred ChHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHH
Q 008887 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDL 447 (550)
Q Consensus 368 ~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~ 447 (550)
++..+..+|..+...|++++|++.|+++++.+|++..++..+|.++...|++++|+++++++++. +|.+......
T Consensus 97 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~~~~ 171 (368)
T 1fch_A 97 HMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRY-----TPAYAHLVTP 171 (368)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-----STTTGGGCC-
T ss_pred CHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CcCcHHHHHH
Confidence 56677899999999999999999999999999999999999999999999999999999999887 6654422210
Q ss_pred --------------------------------------------HHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCC
Q 008887 448 --------------------------------------------LIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEE 483 (550)
Q Consensus 448 --------------------------------------------l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~ 483 (550)
...++..+|.++...|++++|++.|+++++.. |++
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~ 250 (368)
T 1fch_A 172 AEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PND 250 (368)
T ss_dssp --------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTC
T ss_pred HHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCC
Confidence 12367789999999999999999999999997 877
Q ss_pred ccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHHHHHHHhh
Q 008887 484 PKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQLENN 534 (550)
Q Consensus 484 ~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~l~~~ 534 (550)
. .++..+|.++...|++++|+..|+++++++|++...+..+...
T Consensus 251 ~-------~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~ 294 (368)
T 1fch_A 251 Y-------LLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGIS 294 (368)
T ss_dssp H-------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred H-------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 7 8999999999999999999999999999999998887776654
No 51
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.49 E-value=5.7e-13 Score=133.99 Aligned_cols=146 Identities=21% Similarity=0.177 Sum_probs=123.9
Q ss_pred ChHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHH
Q 008887 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDL 447 (550)
Q Consensus 368 ~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~ 447 (550)
+++.++.+|..++..|++++|+..|+++++.+|+++.+++.+|.++...|++++|+++++++++. +|.+. .
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-----~~~~~-~--- 72 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIAL-----KMDFT-A--- 72 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----CTTCH-H---
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----CCCcc-h---
Confidence 45678899999999999999999999999999999999999999999999999999999999999 78776 2
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCC---CCccccccchhHHHHH------------HHHHHhcCCHHHHHH
Q 008887 448 LIVASQWSGVACIRQEKWEEGIAHLERIGNLKEP---EEPKSKAHYYDGLVVL------------ASALCNVGRNAEAEK 512 (550)
Q Consensus 448 l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p---~~~~~~~~~~~~~~~L------------a~~~~~~g~~~eA~~ 512 (550)
++..+|.++...|++++|++.|+++++.. | ++. .++..+ |.++...|++++|++
T Consensus 73 ---~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~ 141 (359)
T 3ieg_A 73 ---ARLQRGHLLLKQGKLDEAEDDFKKVLKSN-PSEQEEK-------EAESQLVKADEMQRLRSQALDAFDGADYTAAIT 141 (359)
T ss_dssp ---HHHHHHHHHHHHTCHHHHHHHHHHHHTSC-CCHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ---HHHHHHHHHHHcCChHHHHHHHHHHHhcC-CcccChH-------HHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHH
Confidence 77889999999999999999999999997 7 544 444444 567777777777777
Q ss_pred HHHHHHHcCCCcHHHHHHHHh
Q 008887 513 YLRLAAAHNPQYNELLEQLEN 533 (550)
Q Consensus 513 ~l~~al~~~p~~~~~~~~l~~ 533 (550)
.++++++.+|++...+..+..
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~ 162 (359)
T 3ieg_A 142 FLDKILEVCVWDAELRELRAE 162 (359)
T ss_dssp HHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHhCCCchHHHHHHHH
Confidence 777777777776665555444
No 52
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.49 E-value=4.7e-13 Score=125.31 Aligned_cols=140 Identities=17% Similarity=0.090 Sum_probs=123.6
Q ss_pred HHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHH
Q 008887 371 ELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIV 450 (550)
Q Consensus 371 ~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~ 450 (550)
.++.+|..+...|++++|+..|++++ ++ ++.+++.+|.+|...|++++|+++|+++++. +|.+. .
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~--~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-----~~~~~-------~ 72 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ--DP-HSRICFNIGCMYTILKNMTEAEKAFTRSINR-----DKHLA-------V 72 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS--SC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCH-------H
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc--CC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----Cccch-------H
Confidence 45689999999999999999999996 33 7899999999999999999999999999999 77776 3
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCcc---------ccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 008887 451 ASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPK---------SKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHN 521 (550)
Q Consensus 451 a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~---------~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~ 521 (550)
+++++|.++...|++++|++.|+++++.. |++.. ..+....+++.+|.+|...|++++|.+.++++++++
T Consensus 73 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 73 AYFQRGMLYYQTEKYDLAIKDLKEALIQL-RGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTT-TTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 78899999999999999999999999987 65431 223345899999999999999999999999999999
Q ss_pred CCcHH
Q 008887 522 PQYNE 526 (550)
Q Consensus 522 p~~~~ 526 (550)
|++..
T Consensus 152 p~~~~ 156 (213)
T 1hh8_A 152 SEPRH 156 (213)
T ss_dssp CSGGG
T ss_pred ccccc
Confidence 97643
No 53
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.48 E-value=6.6e-14 Score=127.94 Aligned_cols=145 Identities=16% Similarity=0.116 Sum_probs=123.3
Q ss_pred HHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHH
Q 008887 371 ELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIV 450 (550)
Q Consensus 371 ~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~ 450 (550)
..+..|..+...|++++|+..|+++++.+|+++.+++.+|.++...|++++|++.++++++. +| ++..
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~-----~p-~~~~------ 75 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLE-----YQ-DNSY------ 75 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG-----GC-CHHH------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc-----cC-ChHH------
Confidence 56789999999999999999999999999999999999999999999999999999999988 77 5522
Q ss_pred HHHHHHHH-HHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCc--HHH
Q 008887 451 ASQWSGVA-CIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQY--NEL 527 (550)
Q Consensus 451 a~~~lg~~-~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~--~~~ 527 (550)
+..++.+ +...++..+|++.++++++.+ |+++ .+++.+|.++...|++++|+..|+++++.+|++ ..+
T Consensus 76 -~~~~~~~~~~~~~~~~~a~~~~~~al~~~-P~~~-------~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a 146 (176)
T 2r5s_A 76 -KSLIAKLELHQQAAESPELKRLEQELAAN-PDNF-------ELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEV 146 (176)
T ss_dssp -HHHHHHHHHHHHHTSCHHHHHHHHHHHHS-TTCH-------HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHH
T ss_pred -HHHHHHHHHHhhcccchHHHHHHHHHHhC-CCCH-------HHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHH
Confidence 2223322 234445567899999999998 9888 999999999999999999999999999999986 447
Q ss_pred HHHHHhhHH
Q 008887 528 LEQLENNDE 536 (550)
Q Consensus 528 ~~~l~~~~~ 536 (550)
+..+..+..
T Consensus 147 ~~~l~~~~~ 155 (176)
T 2r5s_A 147 KKTFMDILS 155 (176)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777766433
No 54
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.48 E-value=1.3e-12 Score=126.78 Aligned_cols=147 Identities=20% Similarity=0.152 Sum_probs=125.4
Q ss_pred ChHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHH
Q 008887 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDL 447 (550)
Q Consensus 368 ~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~ 447 (550)
++..++.+|..+...|++++|+..|+++++.+|++..++..+|.++...|++++|+++|+++++. +|.+.
T Consensus 42 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-----~~~~~----- 111 (275)
T 1xnf_A 42 RAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLEL-----DPTYN----- 111 (275)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCT-----
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhc-----Ccccc-----
Confidence 34566789999999999999999999999999999999999999999999999999999999999 77765
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCcccc----------------------------------------
Q 008887 448 LIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSK---------------------------------------- 487 (550)
Q Consensus 448 l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~---------------------------------------- 487 (550)
.+++.+|.++...|++++|++.++++++.. |++....
T Consensus 112 --~~~~~la~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (275)
T 1xnf_A 112 --YAHLNRGIALYYGGRDKLAQDDLLAFYQDD-PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYL 188 (275)
T ss_dssp --HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCSTHHHHHHHHT
T ss_pred --HHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcchHHHHHHHHHH
Confidence 277889999999999999999999999886 6654100
Q ss_pred -----------------------ccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHH
Q 008887 488 -----------------------AHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNEL 527 (550)
Q Consensus 488 -----------------------~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~ 527 (550)
.....++..+|.+|...|++++|...|+++++.+|++...
T Consensus 189 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 251 (275)
T 1xnf_A 189 GNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVE 251 (275)
T ss_dssp TSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHH
T ss_pred HhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHHH
Confidence 0015788999999999999999999999999999976553
No 55
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.48 E-value=1.2e-12 Score=132.85 Aligned_cols=153 Identities=16% Similarity=0.143 Sum_probs=136.3
Q ss_pred hHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHH
Q 008887 369 PKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLL 448 (550)
Q Consensus 369 ~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l 448 (550)
...++.+|..+...|++++|+..|+++++.+|++..++..+|.++...|++++|+++|+++++. +|.+.
T Consensus 64 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-----~~~~~------ 132 (368)
T 1fch_A 64 HPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLEL-----KPDNQ------ 132 (368)
T ss_dssp CSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCH------
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhc-----CCCCH------
Confidence 3457799999999999999999999999999999999999999999999999999999999999 78776
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccc----------------------------------------
Q 008887 449 IVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKA---------------------------------------- 488 (550)
Q Consensus 449 ~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~---------------------------------------- 488 (550)
.++..+|.++...|++++|++.++++++.. |++.....
T Consensus 133 -~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~ 210 (368)
T 1fch_A 133 -TALMALAVSFTNESLQRQACEILRDWLRYT-PAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRL 210 (368)
T ss_dssp -HHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-TTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHh
Confidence 277889999999999999999999999987 76654332
Q ss_pred --c--chhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHHHHHHHhh
Q 008887 489 --H--YYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQLENN 534 (550)
Q Consensus 489 --~--~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~l~~~ 534 (550)
. ...++..+|.+|...|++++|+..++++++.+|++...+..+...
T Consensus 211 ~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~ 260 (368)
T 1fch_A 211 DPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGAT 260 (368)
T ss_dssp STTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred CcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHH
Confidence 1 357889999999999999999999999999999998887776653
No 56
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.47 E-value=6e-13 Score=113.99 Aligned_cols=120 Identities=10% Similarity=0.018 Sum_probs=111.3
Q ss_pred CChHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHH
Q 008887 367 LTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAID 446 (550)
Q Consensus 367 l~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~ 446 (550)
.++..++.+|..+...|++++|++.|+++++.+|++..+++.+|.++...|++++|+++++++++. +|.+.
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~-----~~~~~---- 84 (133)
T 2lni_A 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQL-----EPTFI---- 84 (133)
T ss_dssp CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHH-----CTTCH----
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHh-----CCCch----
Confidence 367788899999999999999999999999999999999999999999999999999999999999 77766
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCC
Q 008887 447 LLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGR 506 (550)
Q Consensus 447 ~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~ 506 (550)
.+++.+|.++...|++++|+++++++++.. |.+. .++..++.++...|+
T Consensus 85 ---~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~-------~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 85 ---KGYTRKAAALEAMKDYTKAMDVYQKALDLD-SSCK-------EAADGYQRCMMAQYN 133 (133)
T ss_dssp ---HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-GGGT-------HHHHHHHHHHHHHTC
T ss_pred ---HHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-CCch-------HHHHHHHHHHHHhcC
Confidence 277889999999999999999999999997 8777 899999999998775
No 57
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.47 E-value=2.6e-13 Score=134.80 Aligned_cols=152 Identities=11% Similarity=0.035 Sum_probs=120.7
Q ss_pred hHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCC------hHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHhhhcCCCCC
Q 008887 369 PKELIALSVKFLSKGDKERPIPLLQLALNKEPDN------INALILMGQTQLQK-GLLEEAVEYLECAISKLFLAGHPTE 441 (550)
Q Consensus 369 ~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~------~~a~~~lg~~~~~~-g~~~eA~~~~~~al~l~~~~~~p~~ 441 (550)
+..+.++|..+...|++++|+.+|+++++..+.. ..++..+|.+|... |++++|+++|++++++ .|..
T Consensus 77 a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~-----~~~~ 151 (292)
T 1qqe_A 77 GNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEW-----YAQD 151 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH-----HHHT
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHH-----HHhC
Confidence 3456699999999999999999999999987643 56889999999996 9999999999999999 3332
Q ss_pred hhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 008887 442 PEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHN 521 (550)
Q Consensus 442 ~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~ 521 (550)
. .......++.++|.++..+|++++|+++|+++++.. |+....+......+..+|.++..+|++++|+.+|+++++++
T Consensus 152 ~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 229 (292)
T 1qqe_A 152 Q-SVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSS-MGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSED 229 (292)
T ss_dssp T-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-SSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-
T ss_pred C-ChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH-hcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 2 111222367889999999999999999999999997 76552222233478999999999999999999999999999
Q ss_pred CCcHHH
Q 008887 522 PQYNEL 527 (550)
Q Consensus 522 p~~~~~ 527 (550)
|++...
T Consensus 230 p~~~~~ 235 (292)
T 1qqe_A 230 PNFADS 235 (292)
T ss_dssp ------
T ss_pred CCCCCc
Confidence 987653
No 58
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.47 E-value=3.4e-13 Score=116.53 Aligned_cols=104 Identities=16% Similarity=0.118 Sum_probs=94.4
Q ss_pred HHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHH
Q 008887 371 ELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIV 450 (550)
Q Consensus 371 ~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~ 450 (550)
...++|..++..|++++|+++|+++++.+|+++.++.++|.+|...|++++|++.+++++++ +|.+......+..
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~-----~~~~~~~~~~~a~ 84 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEV-----GRETRADYKLIAK 84 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----HHHTTCCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHh-----CcccchhhHHHHH
Confidence 44589999999999999999999999999999999999999999999999999999999999 6655544445556
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHhcCC
Q 008887 451 ASQWSGVACIRQEKWEEGIAHLERIGNLK 479 (550)
Q Consensus 451 a~~~lg~~~~~~g~~~eA~~~~~~al~~~ 479 (550)
+++++|.++..+|++++|+++|+++++..
T Consensus 85 ~~~~lg~~~~~~~~~~~A~~~~~kal~~~ 113 (127)
T 4gcn_A 85 AMSRAGNAFQKQNDLSLAVQWFHRSLSEF 113 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 88999999999999999999999999975
No 59
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.46 E-value=1.8e-12 Score=129.10 Aligned_cols=146 Identities=17% Similarity=0.135 Sum_probs=132.0
Q ss_pred ChHHHHHHHHHHHHcC-CCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHH
Q 008887 368 TPKELIALSVKFLSKG-DKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAID 446 (550)
Q Consensus 368 ~~~~l~~la~~~~~~g-~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~ 446 (550)
++..++.+|..+...| ++++|++.|+++++.+|++..++..+|.++...|++++|+++++++++. +|.+. .
T Consensus 89 ~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-----~~~~~-~-- 160 (330)
T 3hym_B 89 NPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQL-----MKGCH-L-- 160 (330)
T ss_dssp STHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----TTTCS-H--
T ss_pred CHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----ccccH-H--
Confidence 4567789999999999 9999999999999999999999999999999999999999999999999 77765 2
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-----
Q 008887 447 LLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHN----- 521 (550)
Q Consensus 447 ~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~----- 521 (550)
++..+|.++...|++++|++.++++++.. |++. .++..+|.++...|++++|...++++++..
T Consensus 161 ----~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~-------~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~ 228 (330)
T 3hym_B 161 ----PMLYIGLEYGLTNNSKLAERFFSQALSIA-PEDP-------FVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGN 228 (330)
T ss_dssp ----HHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCH-------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSC
T ss_pred ----HHHHHHHHHHHHhhHHHHHHHHHHHHHhC-CCCh-------HHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccc
Confidence 66779999999999999999999999998 8877 899999999999999999999999999986
Q ss_pred ----CCcHHHHHHHHh
Q 008887 522 ----PQYNELLEQLEN 533 (550)
Q Consensus 522 ----p~~~~~~~~l~~ 533 (550)
|.....+..+..
T Consensus 229 ~~~~~~~~~~~~~la~ 244 (330)
T 3hym_B 229 EVTVDKWEPLLNNLGH 244 (330)
T ss_dssp SCTTTTCCHHHHHHHH
T ss_pred cccccHHHHHHHHHHH
Confidence 555556655544
No 60
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.45 E-value=1.9e-13 Score=138.92 Aligned_cols=142 Identities=13% Similarity=0.087 Sum_probs=125.4
Q ss_pred HcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCCh--------hhHHHHHHHH
Q 008887 381 SKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEP--------EAIDLLIVAS 452 (550)
Q Consensus 381 ~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~--------~~~~~l~~a~ 452 (550)
..+++++|++.++++++.+|+++.+++.+|.++...|++++|+++|++++++ +|.+. ........++
T Consensus 125 ~L~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~-----~p~~~~~~~~~~~~~~~~~~~~~ 199 (336)
T 1p5q_A 125 HLKSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSW-----LEYESSFSNEEAQKAQALRLASH 199 (336)
T ss_dssp EEEEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----TTTCCCCCSHHHHHHHHHHHHHH
T ss_pred EEeecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-----hhccccCChHHHHHHHHHHHHHH
Confidence 3567888999999999999999999999999999999999999999999999 77762 0111222488
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHHHHHHH
Q 008887 453 QWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQLE 532 (550)
Q Consensus 453 ~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~l~ 532 (550)
+++|.++.++|++++|+++|+++++++ |++. .+++.+|.+|..+|++++|+..|+++++++|++..++..+.
T Consensus 200 ~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~-------~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~ 271 (336)
T 1p5q_A 200 LNLAMCHLKLQAFSAAIESCNKALELD-SNNE-------KGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLA 271 (336)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCH-------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcH-------HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHH
Confidence 999999999999999999999999998 8877 99999999999999999999999999999999999887776
Q ss_pred hhH
Q 008887 533 NND 535 (550)
Q Consensus 533 ~~~ 535 (550)
.+.
T Consensus 272 ~~~ 274 (336)
T 1p5q_A 272 VCQ 274 (336)
T ss_dssp HHH
T ss_pred HHH
Confidence 643
No 61
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.45 E-value=1.7e-12 Score=128.96 Aligned_cols=146 Identities=12% Similarity=0.109 Sum_probs=127.0
Q ss_pred ChHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHH--HHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhH
Q 008887 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMG--QTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAI 445 (550)
Q Consensus 368 ~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg--~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~ 445 (550)
+++....+|..+...|++++|++.++++++.+|++.......+ ..+...|++++|+..|+++++. +|.++
T Consensus 129 ~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-----~p~~~--- 200 (291)
T 3mkr_A 129 SLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-----CSPTL--- 200 (291)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-----SCCCH---
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-----CCCcH---
Confidence 5567779999999999999999999999999999875555444 3344558999999999999999 88876
Q ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHH-HHHHHHHHHHcCCCc
Q 008887 446 DLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAE-AEKYLRLAAAHNPQY 524 (550)
Q Consensus 446 ~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~e-A~~~l~~al~~~p~~ 524 (550)
.+++++|.++...|++++|++.|+++++.+ |+++ +++.++|.++...|+.++ +.++++++++++|++
T Consensus 201 ----~~~~~la~~~~~~g~~~eA~~~l~~al~~~-p~~~-------~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~ 268 (291)
T 3mkr_A 201 ----LLLNGQAACHMAQGRWEAAEGVLQEALDKD-SGHP-------ETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSH 268 (291)
T ss_dssp ----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCH-------HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTC
T ss_pred ----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCH-------HHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCC
Confidence 378899999999999999999999999998 9888 999999999999999987 568999999999999
Q ss_pred HHHHHHHHh
Q 008887 525 NELLEQLEN 533 (550)
Q Consensus 525 ~~~~~~l~~ 533 (550)
+......++
T Consensus 269 ~~~~d~~~~ 277 (291)
T 3mkr_A 269 PFIKEYRAK 277 (291)
T ss_dssp HHHHHHHHH
T ss_pred hHHHHHHHH
Confidence 987765444
No 62
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.45 E-value=8.2e-13 Score=134.12 Aligned_cols=132 Identities=11% Similarity=0.119 Sum_probs=121.0
Q ss_pred hHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCC---------------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Q 008887 369 PKELIALSVKFLSKGDKERPIPLLQLALNKEPDN---------------INALILMGQTQLQKGLLEEAVEYLECAISKL 433 (550)
Q Consensus 369 ~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~---------------~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~ 433 (550)
+..+..+|..++..|++++|+..|+++++.+|++ ..+++++|.+|...|++++|+++|++++++
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~- 225 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL- 225 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-
Confidence 4466699999999999999999999999999998 699999999999999999999999999999
Q ss_pred hhcCCCCChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHH-HH
Q 008887 434 FLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEA-EK 512 (550)
Q Consensus 434 ~~~~~p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA-~~ 512 (550)
+|.+. .+++++|.++...|++++|++.|+++++++ |++. .++..++.++...|++++| ..
T Consensus 226 ----~p~~~-------~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~-------~a~~~l~~~~~~~~~~~~a~~~ 286 (336)
T 1p5q_A 226 ----DSNNE-------KGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNK-------AAKTQLAVCQQRIRRQLAREKK 286 (336)
T ss_dssp ----CTTCH-------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCH-------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----CCCcH-------HHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCH-------HHHHHHHHHHHHHHHHHHHHHH
Confidence 88876 388899999999999999999999999998 8887 8999999999999999999 45
Q ss_pred HHHHHHHc
Q 008887 513 YLRLAAAH 520 (550)
Q Consensus 513 ~l~~al~~ 520 (550)
.|++++..
T Consensus 287 ~~~~~~~~ 294 (336)
T 1p5q_A 287 LYANMFER 294 (336)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77776653
No 63
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.45 E-value=2.4e-13 Score=121.11 Aligned_cols=118 Identities=18% Similarity=0.082 Sum_probs=100.0
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChh-----hHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhc
Q 008887 403 INALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPE-----AIDLLIVASQWSGVACIRQEKWEEGIAHLERIGN 477 (550)
Q Consensus 403 ~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~-----~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~ 477 (550)
...+..+|..+...|+|++|++.|++++++ +|.++. ....-..+|.++|.++..+|++++|++.|+++++
T Consensus 11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l-----~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~ 85 (159)
T 2hr2_A 11 AYLALSDAQRQLVAGEYDEAAANCRRAMEI-----SHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALH 85 (159)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----HTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-----CCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 456788999999999999999999999999 676311 1111223899999999999999999999999999
Q ss_pred C-------CCCCCccccccchhHH----HHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHHHHHHHh
Q 008887 478 L-------KEPEEPKSKAHYYDGL----VVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQLEN 533 (550)
Q Consensus 478 ~-------~~p~~~~~~~~~~~~~----~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~l~~ 533 (550)
+ + |++. .+| +++|.++..+|++++|+..|+++++++|++......++.
T Consensus 86 l~n~~~e~~-pd~~-------~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~ 144 (159)
T 2hr2_A 86 YFNRRGELN-QDEG-------KLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKER 144 (159)
T ss_dssp HHHHHCCTT-STHH-------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHH
T ss_pred hhhccccCC-CchH-------HHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence 9 8 8776 888 999999999999999999999999999998876665555
No 64
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.44 E-value=6.3e-13 Score=144.46 Aligned_cols=154 Identities=14% Similarity=0.048 Sum_probs=136.3
Q ss_pred ChHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHH
Q 008887 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDL 447 (550)
Q Consensus 368 ~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~ 447 (550)
++..+..+|..+...|++++|++.|+++++.+|+++.++..+|.+|.+.|++++|+++|+++++.... .+.++..
T Consensus 440 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~p~~--- 514 (597)
T 2xpi_A 440 THLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKK--TQSNEKP--- 514 (597)
T ss_dssp CSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH--SCCCSGG---
T ss_pred chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhc--cccchhh---
Confidence 55677799999999999999999999999999999999999999999999999999999999988321 1223321
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHH
Q 008887 448 LIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNEL 527 (550)
Q Consensus 448 l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~ 527 (550)
...++..+|.++.+.|++++|++.++++++.+ |++. .++..+|.+|.+.|++++|.+.++++++++|++...
T Consensus 515 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~ 586 (597)
T 2xpi_A 515 WAATWANLGHAYRKLKMYDAAIDALNQGLLLS-TNDA-------NVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMA 586 (597)
T ss_dssp GHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SCCH-------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCh-------HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHH
Confidence 11377889999999999999999999999997 8877 999999999999999999999999999999999999
Q ss_pred HHHHHhh
Q 008887 528 LEQLENN 534 (550)
Q Consensus 528 ~~~l~~~ 534 (550)
+..+.++
T Consensus 587 ~~~l~~~ 593 (597)
T 2xpi_A 587 SDLLKRA 593 (597)
T ss_dssp HHHHHHT
T ss_pred HHHHHHH
Confidence 8888764
No 65
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.44 E-value=9.3e-13 Score=118.60 Aligned_cols=104 Identities=18% Similarity=0.107 Sum_probs=67.7
Q ss_pred ChHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHH
Q 008887 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDL 447 (550)
Q Consensus 368 ~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~ 447 (550)
+++.++.+|..++..|++++|++.|+++++.+|++..+++.+|.+|...|++++|+++|++++++ +|.+.
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-----~p~~~----- 79 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVV-----DPKYS----- 79 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCH-----
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----CCCCH-----
Confidence 34455566666666666666666666666666666666666666666666666666666666666 55554
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCc
Q 008887 448 LIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEP 484 (550)
Q Consensus 448 l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~ 484 (550)
.+++++|.++...|++++|+++|+++++++ |++.
T Consensus 80 --~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~ 113 (164)
T 3sz7_A 80 --KAWSRLGLARFDMADYKGAKEAYEKGIEAE-GNGG 113 (164)
T ss_dssp --HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-SSSC
T ss_pred --HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCch
Confidence 255666666666666666666666666665 6555
No 66
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.44 E-value=2.6e-12 Score=134.27 Aligned_cols=151 Identities=18% Similarity=0.213 Sum_probs=137.0
Q ss_pred ChHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHH------------HHHHHHcCCHHHHHHHHHHHHHHhhh
Q 008887 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILM------------GQTQLQKGLLEEAVEYLECAISKLFL 435 (550)
Q Consensus 368 ~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~l------------g~~~~~~g~~~eA~~~~~~al~l~~~ 435 (550)
++..+..+|..+...|++++|+..|+++++.+|++..++..+ |.++...|++++|+++|+++++.
T Consensus 210 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--- 286 (450)
T 2y4t_A 210 NTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--- 286 (450)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---
Confidence 566788999999999999999999999999999999988776 99999999999999999999999
Q ss_pred cCCCCChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHH
Q 008887 436 AGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLR 515 (550)
Q Consensus 436 ~~~p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~ 515 (550)
+|.++. .....+..+|.++.+.|++++|++.++++++.. |++. .++..+|.++...|++++|...++
T Consensus 287 --~p~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~-------~~~~~l~~~~~~~~~~~~A~~~~~ 353 (450)
T 2y4t_A 287 --EPSIAE---YTVRSKERICHCFSKDEKPVEAIRVCSEVLQME-PDNV-------NALKDRAEAYLIEEMYDEAIQDYE 353 (450)
T ss_dssp --CCSSHH---HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCH-------HHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred --CCcchH---HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccH-------HHHHHHHHHHHHhcCHHHHHHHHH
Confidence 777653 122367789999999999999999999999997 8777 999999999999999999999999
Q ss_pred HHHHcCCCcHHHHHHHHhh
Q 008887 516 LAAAHNPQYNELLEQLENN 534 (550)
Q Consensus 516 ~al~~~p~~~~~~~~l~~~ 534 (550)
++++++|++...+..+..+
T Consensus 354 ~al~~~p~~~~~~~~l~~~ 372 (450)
T 2y4t_A 354 TAQEHNENDQQIREGLEKA 372 (450)
T ss_dssp HHHTTSSSCHHHHHHHHHH
T ss_pred HHHHhCcchHHHHHHHHHH
Confidence 9999999999988888753
No 67
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.44 E-value=7.3e-13 Score=144.11 Aligned_cols=133 Identities=22% Similarity=0.266 Sum_probs=106.9
Q ss_pred cCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHH
Q 008887 382 KGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIR 461 (550)
Q Consensus 382 ~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~ 461 (550)
.|++++|++.|+++++.+|++..+++.+|.++...|++++|+++|+++++. +|.+. .+++++|.++..
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-----~p~~~-------~~~~~lg~~~~~ 69 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLAL-----HPGHP-------EAVARLGRVRWT 69 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT-----STTCH-------HHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCH-------HHHHHHHHHHHH
Confidence 578999999999999999999999999999999999999999999999999 88776 378899999999
Q ss_pred hcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHHHHHHHhh
Q 008887 462 QEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQLENN 534 (550)
Q Consensus 462 ~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~l~~~ 534 (550)
+|++++|+++|+++++.+ |++. .++..+|.+|.+.|++++|++.|+++++.+|++...+..+...
T Consensus 70 ~g~~~~A~~~~~~al~~~-p~~~-------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 134 (568)
T 2vsy_A 70 QQRHAEAAVLLQQASDAA-PEHP-------GIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNW 134 (568)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCH-------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhcC-CCCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 999999999999999998 8877 9999999999999999999999999999999999888777654
No 68
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.44 E-value=1.8e-12 Score=125.84 Aligned_cols=146 Identities=11% Similarity=0.061 Sum_probs=126.7
Q ss_pred ChHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCC----hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChh
Q 008887 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDN----INALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPE 443 (550)
Q Consensus 368 ~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~----~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~ 443 (550)
++..+..+|..+...|++++|++.++++++ .+++ ..++..+|.++...|++++|+++|+++++. +|.+.
T Consensus 36 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~-----~~~~~- 108 (272)
T 3u4t_A 36 SPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDR-----DTTRL- 108 (272)
T ss_dssp CSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----STTCT-
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhc-----CcccH-
Confidence 344667899999999999999999999999 4333 456999999999999999999999999999 88776
Q ss_pred hHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 008887 444 AIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQ 523 (550)
Q Consensus 444 ~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~ 523 (550)
. ++..+|.++...|++++|+++|+++++.. |.+. .++..+|......+++++|++.++++++.+|+
T Consensus 109 ~------~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~-------~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~ 174 (272)
T 3u4t_A 109 D------MYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDP-------KVFYELGQAYYYNKEYVKADSSFVKVLELKPN 174 (272)
T ss_dssp H------HHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCH-------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred H------HHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 2 77889999999999999999999999997 8877 99999994444456999999999999999999
Q ss_pred cHHHHHHHHhh
Q 008887 524 YNELLEQLENN 534 (550)
Q Consensus 524 ~~~~~~~l~~~ 534 (550)
+...+..+...
T Consensus 175 ~~~~~~~~~~~ 185 (272)
T 3u4t_A 175 IYIGYLWRARA 185 (272)
T ss_dssp CHHHHHHHHHH
T ss_pred chHHHHHHHHH
Confidence 98876666553
No 69
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.44 E-value=4.4e-13 Score=149.21 Aligned_cols=135 Identities=13% Similarity=0.082 Sum_probs=127.0
Q ss_pred HHcCCCCChHHHHHHHH--------hhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHH
Q 008887 380 LSKGDKERPIPLLQLAL--------NKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVA 451 (550)
Q Consensus 380 ~~~g~~~~A~~~~~~aL--------~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a 451 (550)
...|++++|++.+++++ +.+|++..+++.+|.+|...|++++|++.|+++++. +|++. .+
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~-----~p~~~-------~a 469 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAER-----VGWRW-------RL 469 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----HCCCH-------HH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhcc-----CcchH-------HH
Confidence 78899999999999999 899999999999999999999999999999999999 88886 38
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHHHHHH
Q 008887 452 SQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQL 531 (550)
Q Consensus 452 ~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~l 531 (550)
++++|.++..+|++++|++.|+++++.+ |++. .+++++|.+|.+.|++++ ++.|+++++++|++..++.++
T Consensus 470 ~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~-------~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~l 540 (681)
T 2pzi_A 470 VWYRAVAELLTGDYDSATKHFTEVLDTF-PGEL-------APKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGL 540 (681)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCS-------HHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCh-------HHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHH
Confidence 8899999999999999999999999998 9888 999999999999999999 999999999999999988887
Q ss_pred HhhH
Q 008887 532 ENND 535 (550)
Q Consensus 532 ~~~~ 535 (550)
..+.
T Consensus 541 g~~~ 544 (681)
T 2pzi_A 541 ARAR 544 (681)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7643
No 70
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.43 E-value=1.9e-12 Score=128.61 Aligned_cols=144 Identities=16% Similarity=0.072 Sum_probs=123.9
Q ss_pred ChHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHH
Q 008887 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDL 447 (550)
Q Consensus 368 ~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~ 447 (550)
++..++.+|..+...|++++|++.+++ |++..++..+|.++.+.|++++|++.++++++. +|.+... .
T Consensus 100 ~~~~~~~la~~~~~~g~~~~Al~~l~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~-----~p~~~~~--~ 167 (291)
T 3mkr_A 100 NTTFLLMAASIYFYDQNPDAALRTLHQ-----GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ-----DEDATLT--Q 167 (291)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHTT-----CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHH--H
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHhC-----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-----CcCcHHH--H
Confidence 566778999999999999999999988 899999999999999999999999999999999 7665411 0
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHH
Q 008887 448 LIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNEL 527 (550)
Q Consensus 448 l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~ 527 (550)
+..+ +...+...|++++|++.|+++++.. |+++ .++..+|.++.+.|++++|++.++++++.+|++.++
T Consensus 168 l~~a---~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~-------~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~ 236 (291)
T 3mkr_A 168 LATA---WVSLAAGGEKLQDAYYIFQEMADKC-SPTL-------LLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPET 236 (291)
T ss_dssp HHHH---HHHHHHCTTHHHHHHHHHHHHHHHS-CCCH-------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHH---HHHHHhCchHHHHHHHHHHHHHHhC-CCcH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Confidence 1011 1123335589999999999999997 8887 999999999999999999999999999999999999
Q ss_pred HHHHHhh
Q 008887 528 LEQLENN 534 (550)
Q Consensus 528 ~~~l~~~ 534 (550)
+.++...
T Consensus 237 l~~l~~~ 243 (291)
T 3mkr_A 237 LINLVVL 243 (291)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8877654
No 71
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.43 E-value=6.1e-13 Score=116.98 Aligned_cols=104 Identities=14% Similarity=0.160 Sum_probs=97.4
Q ss_pred ChHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHH
Q 008887 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDL 447 (550)
Q Consensus 368 ~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~ 447 (550)
+.+.++.+|..++..|++++|+..|+++++.+|+++.+++.+|.++...|++++|+.+|++++++ +|.++ .
T Consensus 17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-----~p~~~-~--- 87 (142)
T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALM-----DINEP-R--- 87 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCT-H---
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-----CCCCc-H---
Confidence 44566799999999999999999999999999999999999999999999999999999999999 88887 3
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCc
Q 008887 448 LIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEP 484 (550)
Q Consensus 448 l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~ 484 (550)
+++++|.++...|++++|++.|+++++.. |+++
T Consensus 88 ---~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~ 120 (142)
T 2xcb_A 88 ---FPFHAAECHLQLGDLDGAESGFYSARALA-AAQP 120 (142)
T ss_dssp ---HHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HTCG
T ss_pred ---HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCc
Confidence 77899999999999999999999999997 8776
No 72
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.42 E-value=1.6e-12 Score=111.41 Aligned_cols=122 Identities=13% Similarity=0.082 Sum_probs=104.2
Q ss_pred ChHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHH
Q 008887 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDL 447 (550)
Q Consensus 368 ~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~ 447 (550)
+++.+.++|..++..|++++|+..|+++++.+|+++.+++.+|.++...|++++|++++++++++ +|.+.
T Consensus 3 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-----~p~~~----- 72 (126)
T 3upv_A 3 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEK-----DPNFV----- 72 (126)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCH-----
T ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-----CCCcH-----
Confidence 35677899999999999999999999999999999999999999999999999999999999999 88876
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHh
Q 008887 448 LIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCN 503 (550)
Q Consensus 448 l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~ 503 (550)
.+++++|.++...|++++|++.|+++++.+ |+.. ..+....++..++.+..+
T Consensus 73 --~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~-~~p~~~~~~~~l~~~~~~ 124 (126)
T 3upv_A 73 --RAYIRKATAQIAVKEYASALETLDAARTKD-AEVN-NGSSAREIDQLYYKASQQ 124 (126)
T ss_dssp --HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHHH-TTTTHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHhCHHHHHHHHHHHHHhC-cccC-CchhHHHHHHHHHHHHHh
Confidence 378899999999999999999999999985 3211 011222667777766654
No 73
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.42 E-value=2.7e-12 Score=111.14 Aligned_cols=116 Identities=16% Similarity=0.123 Sum_probs=87.5
Q ss_pred hCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhc
Q 008887 398 KEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGN 477 (550)
Q Consensus 398 ~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~ 477 (550)
.++.++..++.+|.++...|++++|+.+|+++++. +|.+. .+++++|.++...|++++|++.++++++
T Consensus 4 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~-----~~~~~-------~~~~~l~~~~~~~~~~~~A~~~~~~al~ 71 (137)
T 3q49_B 4 MKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITR-----NPLVA-------VYYTNRALCYLKMQQPEQALADCRRALE 71 (137)
T ss_dssp --CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCH-------HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh-----CcCcH-------HHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 45667778888888888888888888888888887 66665 2667788888888888888888888888
Q ss_pred CCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-----cHHHHHHHHh
Q 008887 478 LKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQ-----YNELLEQLEN 533 (550)
Q Consensus 478 ~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~-----~~~~~~~l~~ 533 (550)
.+ |++. .+++.+|.+|...|++++|+..|+++++++|+ .......+..
T Consensus 72 ~~-p~~~-------~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~ 124 (137)
T 3q49_B 72 LD-GQSV-------KAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRI 124 (137)
T ss_dssp HC-TTCH-------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHH
T ss_pred hC-chhH-------HHHHHHHHHHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHH
Confidence 76 7666 77888888888888888888888888887776 5555555554
No 74
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.42 E-value=5.5e-12 Score=125.30 Aligned_cols=154 Identities=17% Similarity=0.164 Sum_probs=129.2
Q ss_pred ChHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHH
Q 008887 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDL 447 (550)
Q Consensus 368 ~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~ 447 (550)
++..+..+|..+...|++++|++.++++++.+|++..++..+|.++...|++++|+++++++++. +|.+......
T Consensus 54 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~ 128 (327)
T 3cv0_A 54 REEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLS-----QPQYEQLGSV 128 (327)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-----STTTTTC---
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCccHHHHHH
Confidence 45567788999999999999999999999999999999999999999999999999999998877 4443211100
Q ss_pred H------------------------------------------HHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCcc
Q 008887 448 L------------------------------------------IVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPK 485 (550)
Q Consensus 448 l------------------------------------------~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~ 485 (550)
+ ..++..+|.++...|++++|++.++++++.. |++.
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~- 206 (327)
T 3cv0_A 129 NLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDA- 206 (327)
T ss_dssp -----------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCH-
T ss_pred HhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcH-
Confidence 0 1367789999999999999999999999987 8777
Q ss_pred ccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHHHHHHHhh
Q 008887 486 SKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQLENN 534 (550)
Q Consensus 486 ~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~l~~~ 534 (550)
.++..+|.++...|++++|...++++++.+|++...+..+...
T Consensus 207 ------~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~ 249 (327)
T 3cv0_A 207 ------QLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVS 249 (327)
T ss_dssp ------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ------HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 8999999999999999999999999999999988877766553
No 75
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.42 E-value=5.8e-13 Score=118.39 Aligned_cols=104 Identities=14% Similarity=0.127 Sum_probs=97.6
Q ss_pred ChHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHH
Q 008887 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDL 447 (550)
Q Consensus 368 ~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~ 447 (550)
+++.++.+|..++..|++++|+..|+++++.+|+++.+++.+|.++...|++++|+++|++++++ +|.++ .
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l-----~p~~~-~--- 90 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVM-----DIXEP-R--- 90 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----STTCT-H---
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-----CCCCc-h---
Confidence 45566799999999999999999999999999999999999999999999999999999999999 88887 3
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCc
Q 008887 448 LIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEP 484 (550)
Q Consensus 448 l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~ 484 (550)
+++++|.++...|++++|++.|+++++.. |+++
T Consensus 91 ---~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~ 123 (148)
T 2vgx_A 91 ---FPFHAAECLLQXGELAEAESGLFLAQELI-ANXP 123 (148)
T ss_dssp ---HHHHHHHHHHHTTCHHHHHHHHHHHHHHH-TTCG
T ss_pred ---HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCCC
Confidence 78899999999999999999999999997 7766
No 76
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.42 E-value=1.9e-12 Score=116.57 Aligned_cols=84 Identities=15% Similarity=0.158 Sum_probs=65.5
Q ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcC
Q 008887 399 EPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNL 478 (550)
Q Consensus 399 ~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~ 478 (550)
++.++..++.+|.++...|++++|+++|++++++ +|.+. .+++++|.++...|++++|+++|++++++
T Consensus 7 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~-----~p~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 74 (164)
T 3sz7_A 7 PTPESDKLKSEGNAAMARKEYSKAIDLYTQALSI-----APANP-------IYLSNRAAAYSASGQHEKAAEDAELATVV 74 (164)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----STTCH-------HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCcCH-------HHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 3455677888888888888888888888888888 77665 26777888888888888888888888888
Q ss_pred CCCCCccccccchhHHHHHHHHHH
Q 008887 479 KEPEEPKSKAHYYDGLVVLASALC 502 (550)
Q Consensus 479 ~~p~~~~~~~~~~~~~~~La~~~~ 502 (550)
+ |++. .+++.+|.+|.
T Consensus 75 ~-p~~~-------~~~~~lg~~~~ 90 (164)
T 3sz7_A 75 D-PKYS-------KAWSRLGLARF 90 (164)
T ss_dssp C-TTCH-------HHHHHHHHHHH
T ss_pred C-CCCH-------HHHHHHHHHHH
Confidence 7 7766 67777777764
No 77
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.41 E-value=2.4e-12 Score=109.38 Aligned_cols=120 Identities=18% Similarity=0.113 Sum_probs=111.1
Q ss_pred ChHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHH
Q 008887 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDL 447 (550)
Q Consensus 368 ~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~ 447 (550)
++..+..+|..+...|++++|+..++++++.+|++..++..+|.++...|++++|+++++++++. +|.+.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-----~~~~~----- 80 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICI-----DPAYS----- 80 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCH-----
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhc-----CccCH-----
Confidence 44566799999999999999999999999999999999999999999999999999999999999 77775
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCH
Q 008887 448 LIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRN 507 (550)
Q Consensus 448 l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~ 507 (550)
.+++.+|.++...|++++|+++++++++.. |++. .++..+|.++...|++
T Consensus 81 --~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-p~~~-------~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 81 --KAYGRMGLALSSLNKHVEAVAYYKKALELD-PDNE-------TYKSNLKIAELKLREA 130 (131)
T ss_dssp --HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCH-------HHHHHHHHHHHHHTTC
T ss_pred --HHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-ccch-------HHHHHHHHHHHHHhcC
Confidence 277889999999999999999999999997 8777 8999999999999875
No 78
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.41 E-value=6.7e-12 Score=124.67 Aligned_cols=154 Identities=14% Similarity=0.072 Sum_probs=134.0
Q ss_pred ChHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHH
Q 008887 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDL 447 (550)
Q Consensus 368 ~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~ 447 (550)
+.+.++.+|..+...|++++|+..|+++++.+|++..++..+|.++...|++++|+++++++++. +|.+.
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-----~~~~~----- 89 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARML-----DPKDI----- 89 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCH-----
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CcCCH-----
Confidence 33467799999999999999999999999999999999999999999999999999999999999 77776
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccc---------------------------------------
Q 008887 448 LIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKA--------------------------------------- 488 (550)
Q Consensus 448 l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~--------------------------------------- 488 (550)
.++..+|.++...|++++|++.++++++.. |.+.....
T Consensus 90 --~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 166 (327)
T 3cv0_A 90 --AVHAALAVSHTNEHNANAALASLRAWLLSQ-PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALE 166 (327)
T ss_dssp --HHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-TTTTTC--------------------CCTTSHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHh
Confidence 277789999999999999999999999886 65542221
Q ss_pred ---cchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHHHHHHHhh
Q 008887 489 ---HYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQLENN 534 (550)
Q Consensus 489 ---~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~l~~~ 534 (550)
....++..+|.+|...|++++|.+.++++++.+|++...+..+...
T Consensus 167 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 215 (327)
T 3cv0_A 167 MNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGAT 215 (327)
T ss_dssp HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 1356788999999999999999999999999999998877766553
No 79
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.41 E-value=8.1e-13 Score=122.93 Aligned_cols=149 Identities=15% Similarity=0.078 Sum_probs=118.2
Q ss_pred HHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhH---------H
Q 008887 376 SVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAI---------D 446 (550)
Q Consensus 376 a~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~---------~ 446 (550)
+......|++++|.+.++...+..+.....+..+|..+...|++++|+++|+++++. .|.++... .
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~-----~~~~~~~~~~~~~~~~~~ 85 (198)
T 2fbn_A 11 SSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDF-----FIHTEEWDDQILLDKKKN 85 (198)
T ss_dssp -----------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-----TTTCTTCCCHHHHHHHHH
T ss_pred hhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-----HhcccccchhhHHHHHHH
Confidence 344566778888888877777666777888999999999999999999999999998 66655110 1
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHH
Q 008887 447 LLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNE 526 (550)
Q Consensus 447 ~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~ 526 (550)
....+++++|.++...|++++|+++++++++.+ |++. .+++.+|.+|...|++++|+..|+++++++|++..
T Consensus 86 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~-------~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~ 157 (198)
T 2fbn_A 86 IEISCNLNLATCYNKNKDYPKAIDHASKVLKID-KNNV-------KALYKLGVANMYFGFLEEAKENLYKAASLNPNNLD 157 (198)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCH-------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHH
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cccH-------HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHH
Confidence 112378899999999999999999999999997 8777 99999999999999999999999999999999999
Q ss_pred HHHHHHhhHHH
Q 008887 527 LLEQLENNDEE 537 (550)
Q Consensus 527 ~~~~l~~~~~~ 537 (550)
++..+......
T Consensus 158 ~~~~l~~~~~~ 168 (198)
T 2fbn_A 158 IRNSYELCVNK 168 (198)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 88888774433
No 80
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.41 E-value=3.4e-12 Score=133.43 Aligned_cols=153 Identities=19% Similarity=0.175 Sum_probs=126.8
Q ss_pred ChHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHH
Q 008887 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDL 447 (550)
Q Consensus 368 ~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~ 447 (550)
++..++.+|..+...|++++|+..|+++++.+|++..+++.+|.++...|++++|+++|+++++. +|.+.
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-----~p~~~----- 94 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQL-----KMDFT----- 94 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCH-----
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-----CCCcH-----
Confidence 45667799999999999999999999999999999999999999999999999999999999999 77775
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCc---cccccc-----hhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008887 448 LIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEP---KSKAHY-----YDGLVVLASALCNVGRNAEAEKYLRLAAA 519 (550)
Q Consensus 448 l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~---~~~~~~-----~~~~~~La~~~~~~g~~~eA~~~l~~al~ 519 (550)
.++..+|.++...|++++|++.|+++++.. |++. ...... ...+..+|.++...|++++|+..++++++
T Consensus 95 --~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~ 171 (450)
T 2y4t_A 95 --AARLQRGHLLLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILE 171 (450)
T ss_dssp --HHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 378889999999999999999999999997 7543 111111 11244557778888888888888888888
Q ss_pred cCCCcHHHHHHHHh
Q 008887 520 HNPQYNELLEQLEN 533 (550)
Q Consensus 520 ~~p~~~~~~~~l~~ 533 (550)
.+|++...+..+..
T Consensus 172 ~~~~~~~~~~~l~~ 185 (450)
T 2y4t_A 172 VCVWDAELRELRAE 185 (450)
T ss_dssp HCTTCHHHHHHHHH
T ss_pred hCCCChHHHHHHHH
Confidence 88877776665554
No 81
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.41 E-value=3.9e-12 Score=114.18 Aligned_cols=125 Identities=18% Similarity=0.117 Sum_probs=102.1
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhc---CCCCChhh---HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 008887 402 NINALILMGQTQLQKGLLEEAVEYLECAISKLFLA---GHPTEPEA---IDLLIVASQWSGVACIRQEKWEEGIAHLERI 475 (550)
Q Consensus 402 ~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~---~~p~~~~~---~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~a 475 (550)
.+..+..+|..++..|+|++|+.+|+++++..... .+|.+++. .+....+++++|.|+...|++++|+..++++
T Consensus 10 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~a 89 (162)
T 3rkv_A 10 SVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEV 89 (162)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 35678889999999999999999999999873111 12322210 1222248889999999999999999999999
Q ss_pred hcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcH-HHHHHHHhh
Q 008887 476 GNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYN-ELLEQLENN 534 (550)
Q Consensus 476 l~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~-~~~~~l~~~ 534 (550)
++++ |++. .+++.+|.+|..+|++++|+..|+++++++|++. .....+...
T Consensus 90 l~~~-p~~~-------~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~ 141 (162)
T 3rkv_A 90 LKRE-ETNE-------KALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIV 141 (162)
T ss_dssp HHHS-TTCH-------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred HhcC-Ccch-------HHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 9998 8887 9999999999999999999999999999999999 566666663
No 82
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.41 E-value=2.2e-12 Score=122.70 Aligned_cols=148 Identities=16% Similarity=0.158 Sum_probs=126.8
Q ss_pred hHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChH---HHHHHHHHHHH------------------cCCHHHHHHHHH
Q 008887 369 PKELIALSVKFLSKGDKERPIPLLQLALNKEPDNIN---ALILMGQTQLQ------------------KGLLEEAVEYLE 427 (550)
Q Consensus 369 ~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~---a~~~lg~~~~~------------------~g~~~eA~~~~~ 427 (550)
++.++.+|..++..|++++|++.|+++++.+|++.. +++.+|.++.. .|++++|+..|+
T Consensus 41 ~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 120 (225)
T 2yhc_A 41 QQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFS 120 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHH
Confidence 467789999999999999999999999999999864 88999999986 579999999999
Q ss_pred HHHHHhhhcCCCCChhhHHHHH----------HHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHH
Q 008887 428 CAISKLFLAGHPTEPEAIDLLI----------VASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVL 497 (550)
Q Consensus 428 ~al~l~~~~~~p~~~~~~~~l~----------~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~L 497 (550)
++++. +|+++....... ...+.+|.++...|++++|+..|+++++.. |+++ ...+++..+
T Consensus 121 ~~l~~-----~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~----~~~~a~~~l 190 (225)
T 2yhc_A 121 KLVRG-----YPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDY-PDTQ----ATRDALPLM 190 (225)
T ss_dssp HHHTT-----CTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTSH----HHHHHHHHH
T ss_pred HHHHH-----CcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHC-cCCC----ccHHHHHHH
Confidence 99999 888774322111 123578999999999999999999999997 8765 334789999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCcHH
Q 008887 498 ASALCNVGRNAEAEKYLRLAAAHNPQYNE 526 (550)
Q Consensus 498 a~~~~~~g~~~eA~~~l~~al~~~p~~~~ 526 (550)
|.+|.++|++++|++.++++....|+..+
T Consensus 191 ~~~~~~~g~~~~A~~~~~~l~~~~~~~~~ 219 (225)
T 2yhc_A 191 ENAYRQMQMNAQAEKVAKIIAANSSNTLE 219 (225)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHCCSCCCC
T ss_pred HHHHHHcCCcHHHHHHHHHHHhhCCCchh
Confidence 99999999999999999999998887654
No 83
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.38 E-value=2.6e-12 Score=119.41 Aligned_cols=132 Identities=12% Similarity=0.029 Sum_probs=112.3
Q ss_pred hHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCCh----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 008887 369 PKELIALSVKFLSKGDKERPIPLLQLALNKEPDNI----------------NALILMGQTQLQKGLLEEAVEYLECAISK 432 (550)
Q Consensus 369 ~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~----------------~a~~~lg~~~~~~g~~~eA~~~~~~al~l 432 (550)
+..+..+|..++..|++++|+..|+++++..|+++ .++.++|.+|...|++++|+.+++++++.
T Consensus 38 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 117 (198)
T 2fbn_A 38 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI 117 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 34566899999999999999999999999999887 89999999999999999999999999999
Q ss_pred hhhcCCCCChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHH-
Q 008887 433 LFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAE- 511 (550)
Q Consensus 433 ~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~- 511 (550)
+|.+. .+++.+|.++...|++++|+++|+++++.+ |++. .++..++.++...|+.+++.
T Consensus 118 -----~p~~~-------~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~-------~~~~~l~~~~~~~~~~~~~~~ 177 (198)
T 2fbn_A 118 -----DKNNV-------KALYKLGVANMYFGFLEEAKENLYKAASLN-PNNL-------DIRNSYELCVNKLKEARKKDK 177 (198)
T ss_dssp -----STTCH-------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCH-------HHHHHHHHHHHHHHHHHC---
T ss_pred -----CcccH-------HHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcH-------HHHHHHHHHHHHHHHHHHHHH
Confidence 88776 378899999999999999999999999998 8887 99999999999999888887
Q ss_pred HHHHHHHHc
Q 008887 512 KYLRLAAAH 520 (550)
Q Consensus 512 ~~l~~al~~ 520 (550)
..+.+.+..
T Consensus 178 ~~~~~~f~~ 186 (198)
T 2fbn_A 178 LTFGGMFDK 186 (198)
T ss_dssp ---------
T ss_pred HHHHHHhcc
Confidence 455555443
No 84
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.38 E-value=1.2e-12 Score=129.25 Aligned_cols=151 Identities=13% Similarity=0.051 Sum_probs=126.2
Q ss_pred ChHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHH
Q 008887 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDL 447 (550)
Q Consensus 368 ~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~ 447 (550)
+++.+..+|..++..|++++|+..|+++++.+|+++.+++++|.+|...|++++|++.+++++++ +|.+.
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-----~p~~~----- 72 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALEL-----DGQSV----- 72 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-----CTTCH-----
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-----CCCCH-----
Confidence 56778899999999999999999999999999999999999999999999999999999999999 88776
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCcccccc------------------------chhHHHHHHHHHHh
Q 008887 448 LIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAH------------------------YYDGLVVLASALCN 503 (550)
Q Consensus 448 l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~------------------------~~~~~~~La~~~~~ 503 (550)
.+++++|.++...|++++|++.|+++++.+ |++...... .......++.. .
T Consensus 73 --~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~l--~ 147 (281)
T 2c2l_A 73 --KAHFFLGQCQLEMESYDEAIANLQRAYSLA-KEQRLNFGDDIPSALRIAKKKRWNSIEERRIHQESELHSYLTRL--I 147 (281)
T ss_dssp --HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHTTCCCCSHHHHHHHHHHHHHHHHHHHTCCCCCCHHHHHHHHH--H
T ss_pred --HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH--H
Confidence 378899999999999999999999999987 755322111 11222233333 3
Q ss_pred cCCHHHHHHHHHHHHHcCCCcHHHHHHHHh
Q 008887 504 VGRNAEAEKYLRLAAAHNPQYNELLEQLEN 533 (550)
Q Consensus 504 ~g~~~eA~~~l~~al~~~p~~~~~~~~l~~ 533 (550)
.|++++|++.++++++.+|++......+..
T Consensus 148 ~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 177 (281)
T 2c2l_A 148 AAERERELEECQRNHEGHEDDGHIRAQQAC 177 (281)
T ss_dssp HHHHHHHHTTTSGGGTTTSCHHHHTHHHHH
T ss_pred HHHHHHHHHHHHhhhccccchhhhhhHHHH
Confidence 689999999999999999998776665544
No 85
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.38 E-value=6.6e-12 Score=136.37 Aligned_cols=155 Identities=14% Similarity=0.141 Sum_probs=133.7
Q ss_pred ChHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHH
Q 008887 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDL 447 (550)
Q Consensus 368 ~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~ 447 (550)
+...+..++..+...|++++|++.|+++++.+|++..++..+|.+|.+.|++++|+++|+++++. +|.++
T Consensus 406 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~----- 475 (597)
T 2xpi_A 406 FGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYAL-----FQYDP----- 475 (597)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----CCCCH-----
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCh-----
Confidence 55677789999999999999999999999999999999999999999999999999999999998 77766
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHH
Q 008887 448 LIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNEL 527 (550)
Q Consensus 448 l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~ 527 (550)
.++..+|.++.+.|++++|++.|+++++.. |+.+.+......++..+|.+|.+.|++++|++.++++++.+|++...
T Consensus 476 --~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 552 (597)
T 2xpi_A 476 --LLLNELGVVAFNKSDMQTAINHFQNALLLV-KKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANV 552 (597)
T ss_dssp --HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHH
T ss_pred --HHHHHHHHHHHHhCCHHHHHHHHHHHHHhh-hccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHH
Confidence 277889999999999999999999999874 32111111224799999999999999999999999999999999988
Q ss_pred HHHHHhhH
Q 008887 528 LEQLENND 535 (550)
Q Consensus 528 ~~~l~~~~ 535 (550)
+..+..+.
T Consensus 553 ~~~l~~~~ 560 (597)
T 2xpi_A 553 HTAIALVY 560 (597)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 87776643
No 86
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.38 E-value=2.4e-12 Score=124.89 Aligned_cols=129 Identities=16% Similarity=0.120 Sum_probs=117.6
Q ss_pred HHcCCCCChHHHHHHHHhhC----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHH
Q 008887 380 LSKGDKERPIPLLQLALNKE----PDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWS 455 (550)
Q Consensus 380 ~~~g~~~~A~~~~~~aL~~~----p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~l 455 (550)
...|++++|+..|+++++.. |+++.+++.+|.++...|++++|+++|+++++. +|.+. . +++.+
T Consensus 16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-----~~~~~-~------~~~~l 83 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAI-----RPDMP-E------VFNYL 83 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CCCCH-H------HHHHH
T ss_pred CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHc-----CCCcH-H------HHHHH
Confidence 34578999999999999973 567889999999999999999999999999999 88776 2 78889
Q ss_pred HHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHHH
Q 008887 456 GVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELL 528 (550)
Q Consensus 456 g~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~ 528 (550)
|.++...|++++|+++|+++++.. |++. .++..+|.+|...|++++|...++++++.+|++....
T Consensus 84 a~~~~~~~~~~~A~~~~~~al~~~-~~~~-------~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 148 (275)
T 1xnf_A 84 GIYLTQAGNFDAAYEAFDSVLELD-PTYN-------YAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRS 148 (275)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCT-------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHhcC-cccc-------HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHH
Confidence 999999999999999999999997 8877 9999999999999999999999999999999987533
No 87
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.37 E-value=2.6e-12 Score=109.94 Aligned_cols=102 Identities=25% Similarity=0.191 Sum_probs=86.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCc
Q 008887 405 ALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEP 484 (550)
Q Consensus 405 a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~ 484 (550)
.++.+|..+...|++++|+..|+++++. +|.+. .+++.+|.++...|++++|++.|+++++++ |++.
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~-----~P~~~-------~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~ 85 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQK-----EPERE-------EAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDI 85 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHH-----STTCH-------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHH-----CCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCH
Confidence 4678899999999999999999999999 88877 378889999999999999999999999998 8887
Q ss_pred cccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHH
Q 008887 485 KSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNE 526 (550)
Q Consensus 485 ~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~ 526 (550)
.++..+|.+|...|++++|+..++++++.+|++..
T Consensus 86 -------~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~ 120 (121)
T 1hxi_A 86 -------AVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQ 120 (121)
T ss_dssp -------HHHHHHHHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred -------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCCC
Confidence 89999999999999999999999999999998754
No 88
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.37 E-value=5.4e-13 Score=141.36 Aligned_cols=143 Identities=13% Similarity=0.083 Sum_probs=121.5
Q ss_pred HcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChh--------hHHHHHHHH
Q 008887 381 SKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPE--------AIDLLIVAS 452 (550)
Q Consensus 381 ~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~--------~~~~l~~a~ 452 (550)
..+++++|++.++++++.+|+++.+++.+|.+++..|+|++|+.+|++++++ +|.+.. .......++
T Consensus 246 ~l~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~-----~p~~~~~~~~~~~~~~~~~~~~~ 320 (457)
T 1kt0_A 246 TLKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSW-----LEMEYGLSEKESKASESFLLAAF 320 (457)
T ss_dssp EEEEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----HTTCCSCCHHHHHHHHHHHHHHH
T ss_pred hhhhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-----hcccccCChHHHHHHHHHHHHHH
Confidence 4567888999999999999999999999999999999999999999999999 666520 111223488
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHHHHHHH
Q 008887 453 QWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQLE 532 (550)
Q Consensus 453 ~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~l~ 532 (550)
+++|.|+.++|++++|+++|+++++++ |++. .+++.+|.+|..+|++++|+..|+++++++|++..++..+.
T Consensus 321 ~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~-------~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~ 392 (457)
T 1kt0_A 321 LNLAMCYLKLREYTKAVECCDKALGLD-SANE-------KGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIS 392 (457)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCH-------HHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhcC-CccH-------HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 999999999999999999999999998 8877 99999999999999999999999999999999998887776
Q ss_pred hhHH
Q 008887 533 NNDE 536 (550)
Q Consensus 533 ~~~~ 536 (550)
.+..
T Consensus 393 ~~~~ 396 (457)
T 1kt0_A 393 MCQK 396 (457)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6433
No 89
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.37 E-value=3.3e-12 Score=109.34 Aligned_cols=101 Identities=17% Similarity=0.115 Sum_probs=91.0
Q ss_pred HHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHH
Q 008887 371 ELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIV 450 (550)
Q Consensus 371 ~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~ 450 (550)
..+.+|..++..|++++|+..|+++++.+|+++.+++.+|.++...|++++|+.+|++++++ +|+++ .
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l-----~P~~~-~------ 86 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARML-----DPKDI-A------ 86 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCH-H------
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCH-H------
Confidence 46789999999999999999999999999999999999999999999999999999999999 88887 3
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCc
Q 008887 451 ASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEP 484 (550)
Q Consensus 451 a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~ 484 (550)
+++++|.++...|++++|++.++++++.+ |++.
T Consensus 87 ~~~~la~~~~~~g~~~~A~~~~~~al~~~-P~~~ 119 (121)
T 1hxi_A 87 VHAALAVSHTNEHNANAALASLRAWLLSQ-PQYE 119 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCC
Confidence 78899999999999999999999999997 7654
No 90
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.36 E-value=1.7e-11 Score=102.15 Aligned_cols=111 Identities=23% Similarity=0.274 Sum_probs=69.1
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCC
Q 008887 403 INALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPE 482 (550)
Q Consensus 403 ~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~ 482 (550)
+..++.+|..+...|++++|+++|+++++. +|.+. .+++.+|.++...|++++|++.++++++.. |+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~-------~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~ 70 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKL-----DPHNH-------VLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PD 70 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCH-------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TT
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHH-----CCCcH-------HHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cc
Confidence 345566666666666666666666666666 55444 145556666666666666666666666665 55
Q ss_pred CccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHHHHHHHh
Q 008887 483 EPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQLEN 533 (550)
Q Consensus 483 ~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~l~~ 533 (550)
+. .++..+|.++...|++++|.+.++++++.+|++...+..+..
T Consensus 71 ~~-------~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 114 (118)
T 1elw_A 71 WG-------KGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQN 114 (118)
T ss_dssp CH-------HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHH
T ss_pred cH-------HHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 44 566666666666666666666666666666666665555544
No 91
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.36 E-value=1.7e-11 Score=102.15 Aligned_cols=114 Identities=18% Similarity=0.066 Sum_probs=104.5
Q ss_pred hHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHH
Q 008887 369 PKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLL 448 (550)
Q Consensus 369 ~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l 448 (550)
++.++.+|..+...|++++|+..|+++++.+|++..++..+|.++...|++++|+.+++++++. +|.++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-----~~~~~------ 72 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL-----KPDWG------ 72 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----CTTCH------
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHh-----CcccH------
Confidence 4577799999999999999999999999999999999999999999999999999999999999 77766
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHH
Q 008887 449 IVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALC 502 (550)
Q Consensus 449 ~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~ 502 (550)
.+++.+|.++...|++++|++.++++++.. |++. .++..++.+..
T Consensus 73 -~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~-------~~~~~l~~~~~ 117 (118)
T 1elw_A 73 -KGYSRKAAALEFLNRFEEAKRTYEEGLKHE-ANNP-------QLKEGLQNMEA 117 (118)
T ss_dssp -HHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCH-------HHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHhhHHHHHHHHHHHHHcC-CCCH-------HHHHHHHHhhc
Confidence 277889999999999999999999999998 8777 78888877653
No 92
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.36 E-value=4.7e-12 Score=109.54 Aligned_cols=124 Identities=17% Similarity=0.066 Sum_probs=106.6
Q ss_pred CChHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHH
Q 008887 367 LTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAID 446 (550)
Q Consensus 367 l~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~ 446 (550)
.++..++.+|..++..|++++|+..|+++++.+|++..+++.+|.++...|++++|+.++++++++ +|.+.
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-----~p~~~---- 77 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALEL-----DGQSV---- 77 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCH----
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-----CchhH----
Confidence 367788899999999999999999999999999999999999999999999999999999999999 88776
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcC
Q 008887 447 LLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVG 505 (550)
Q Consensus 447 ~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g 505 (550)
.+++.+|.++...|++++|++.|+++++.. |++... ....+...+..+..+..
T Consensus 78 ---~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~--~~~~~~~~l~~~~~~~~ 130 (137)
T 3q49_B 78 ---KAHFFLGQCQLEMESYDEAIANLQRAYSLA-KEQRLN--FGDDIPSALRIAKKKRW 130 (137)
T ss_dssp ---HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHTTCC--CTTHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHhhHHHHHHHHHHHHHHC-hhHHHH--HHHHHHHHHHHHHHHHH
Confidence 378899999999999999999999999987 652211 11256666666655443
No 93
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.35 E-value=6.3e-12 Score=107.49 Aligned_cols=116 Identities=17% Similarity=0.157 Sum_probs=106.4
Q ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcC
Q 008887 399 EPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNL 478 (550)
Q Consensus 399 ~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~ 478 (550)
.|.+..+++.+|.++...|++++|+++|+++++. +|.+. .+++.+|.++...|++++|+++++++++.
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-----~~~~~-------~~~~~la~~~~~~~~~~~A~~~~~~a~~~ 79 (133)
T 2lni_A 12 NPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKR-----NPKDA-------KLYSNRAACYTKLLEFQLALKDCEECIQL 79 (133)
T ss_dssp SSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTT-----CTTCH-------HHHHHHHHHHTTTTCHHHHHHHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCCcH-------HHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 4667899999999999999999999999999999 77765 37788999999999999999999999999
Q ss_pred CCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHHHHHHHhh
Q 008887 479 KEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQLENN 534 (550)
Q Consensus 479 ~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~l~~~ 534 (550)
. |++. .++..+|.++...|++++|++.++++++.+|++...+..+...
T Consensus 80 ~-~~~~-------~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 127 (133)
T 2lni_A 80 E-PTFI-------KGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRC 127 (133)
T ss_dssp C-TTCH-------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHH
T ss_pred C-CCch-------HHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 7 8777 8999999999999999999999999999999999888877763
No 94
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.35 E-value=2.2e-12 Score=113.81 Aligned_cols=146 Identities=13% Similarity=0.037 Sum_probs=118.4
Q ss_pred HHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCC------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChh
Q 008887 370 KELIALSVKFLSKGDKERPIPLLQLALNKEPDN------INALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPE 443 (550)
Q Consensus 370 ~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~------~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~ 443 (550)
..+..+|..+...|++++|+.+++++++..+.. ..++..+|.++...|++++|+++++++++.... ..
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~-----~~- 83 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQ-----LK- 83 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-----TT-
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH-----hC-
Confidence 355689999999999999999999999975432 258899999999999999999999999998422 11
Q ss_pred hHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 008887 444 AIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQ 523 (550)
Q Consensus 444 ~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~ 523 (550)
.......++.++|.++...|++++|+++++++++.. +.. .+......++..+|.+|...|++++|.+.+++++++...
T Consensus 84 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 161 (164)
T 3ro3_A 84 DRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIA-QEL-KDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 161 (164)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHT-TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred CcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH-HHc-cchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 112223478899999999999999999999999874 222 122344578999999999999999999999999987544
No 95
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.34 E-value=3.1e-11 Score=120.57 Aligned_cols=148 Identities=11% Similarity=0.022 Sum_probs=107.7
Q ss_pred CChHHHHHHHHHHHH-------cCCC-------CChHHHHHHHHh-hCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008887 367 LTPKELIALSVKFLS-------KGDK-------ERPIPLLQLALN-KEPDNINALILMGQTQLQKGLLEEAVEYLECAIS 431 (550)
Q Consensus 367 l~~~~l~~la~~~~~-------~g~~-------~~A~~~~~~aL~-~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~ 431 (550)
.+++.++..|..+.. .|++ ++|...|+++++ .+|++..+|..+|.++...|++++|.+.|+++++
T Consensus 48 ~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 127 (308)
T 2ond_A 48 HHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLA 127 (308)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 467777777776653 4776 788888888888 6888888888888888888888888888888888
Q ss_pred HhhhcCCCCChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHH-hcCCHHHH
Q 008887 432 KLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALC-NVGRNAEA 510 (550)
Q Consensus 432 l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~-~~g~~~eA 510 (550)
. +|.++.. +|.++|.++.+.|++++|++.|+++++.. |... ..+...+.... ..|++++|
T Consensus 128 ~-----~p~~~~~------~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~-------~~~~~~a~~~~~~~~~~~~A 188 (308)
T 2ond_A 128 I-----EDIDPTL------VYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRH-------HVYVTAALMEYYCSKDKSVA 188 (308)
T ss_dssp S-----SSSCTHH------HHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCT-------HHHHHHHHHHHHTSCCHHHH
T ss_pred c-----cccCccH------HHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCH-------HHHHHHHHHHHHHcCCHHHH
Confidence 7 6766521 56677888888888888888888888876 6544 55554444432 25777777
Q ss_pred HHHHHHHHHcCCCcHHHHHHHHh
Q 008887 511 EKYLRLAAAHNPQYNELLEQLEN 533 (550)
Q Consensus 511 ~~~l~~al~~~p~~~~~~~~l~~ 533 (550)
+..|+++++.+|++..++..+..
T Consensus 189 ~~~~~~al~~~p~~~~~~~~~~~ 211 (308)
T 2ond_A 189 FKIFELGLKKYGDIPEYVLAYID 211 (308)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHhCCCcHHHHHHHHH
Confidence 77777777777777666655443
No 96
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.34 E-value=1.5e-11 Score=107.29 Aligned_cols=117 Identities=16% Similarity=0.176 Sum_probs=61.2
Q ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCC
Q 008887 400 PDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLK 479 (550)
Q Consensus 400 p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~ 479 (550)
+.+...++.+|..+...|++++|+++|+++++. +|.+... ..+++++|.++...|++++|+++++++++..
T Consensus 25 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~-----~~~~~~~----~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~ 95 (148)
T 2dba_A 25 ASSVEQLRKEGNELFKCGDYGGALAAYTQALGL-----DATPQDQ----AVLHRNRAACHLKLEDYDKAETEASKAIEKD 95 (148)
T ss_dssp CCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS-----CCCHHHH----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH-----cccchHH----HHHHHHHHHHHHHHccHHHHHHHHHHHHhhC
Confidence 344444555555555555555555555555444 3332100 1244455555555555555555555555554
Q ss_pred CCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHHHHHHHh
Q 008887 480 EPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQLEN 533 (550)
Q Consensus 480 ~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~l~~ 533 (550)
|++. .+++.+|.+|...|++++|...|+++++++|++...+..+.+
T Consensus 96 -~~~~-------~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 141 (148)
T 2dba_A 96 -GGDV-------KALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRN 141 (148)
T ss_dssp -SCCH-------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHH
T ss_pred -ccCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHH
Confidence 5444 555556666666666666666666666666655555554444
No 97
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.34 E-value=5.3e-12 Score=125.27 Aligned_cols=160 Identities=13% Similarity=0.014 Sum_probs=125.5
Q ss_pred HHHHHHHHHHHHc-CCCCChHHHHHHHHhhCCCC------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCCh
Q 008887 370 KELIALSVKFLSK-GDKERPIPLLQLALNKEPDN------INALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEP 442 (550)
Q Consensus 370 ~~l~~la~~~~~~-g~~~~A~~~~~~aL~~~p~~------~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~ 442 (550)
..+.++|..+... |++++|+.+|+++++..|++ ..++..+|.++...|++++|+.+|++++++ +|.+.
T Consensus 118 ~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-----~~~~~ 192 (292)
T 1qqe_A 118 NFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKS-----SMGNR 192 (292)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-----TSSCT
T ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH-----HhcCC
Confidence 3566999999996 99999999999999987754 567899999999999999999999999999 66655
Q ss_pred hhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHH--hcCCHHHHHHHHHHHHHc
Q 008887 443 EAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALC--NVGRNAEAEKYLRLAAAH 520 (550)
Q Consensus 443 ~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~--~~g~~~eA~~~l~~al~~ 520 (550)
........++.++|.++..+|++++|+.+|+++++++ |+...... ...+..++.++. ..+++++|+..|++++.+
T Consensus 193 ~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~--~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l 269 (292)
T 1qqe_A 193 LSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSED-PNFADSRE--SNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRL 269 (292)
T ss_dssp TTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC------------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCC
T ss_pred cccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCCCcHH--HHHHHHHHHHHHcCCHHHHHHHHHHhccCCcc
Confidence 2211122367789999999999999999999999997 87652221 234566777775 567899999999999999
Q ss_pred CCCcHHHHHHHHhhHHH
Q 008887 521 NPQYNELLEQLENNDEE 537 (550)
Q Consensus 521 ~p~~~~~~~~l~~~~~~ 537 (550)
+|.+...+..+.+..++
T Consensus 270 ~~~~~~~~~~~k~~~~~ 286 (292)
T 1qqe_A 270 DKWKITILNKIKESIQQ 286 (292)
T ss_dssp CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhc
Confidence 99998888888775544
No 98
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.33 E-value=2.2e-11 Score=102.40 Aligned_cols=117 Identities=25% Similarity=0.367 Sum_probs=107.5
Q ss_pred hHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHH
Q 008887 369 PKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLL 448 (550)
Q Consensus 369 ~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l 448 (550)
...++.+|..+...|++++|++.++++++.+|++..++..+|.++...|++++|+.+++++++. +|.+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-----~~~~~------ 77 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL-----DPNNA------ 77 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCH------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh-----CCccH------
Confidence 5567799999999999999999999999999999999999999999999999999999999999 77765
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcC
Q 008887 449 IVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVG 505 (550)
Q Consensus 449 ~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g 505 (550)
.+++.+|.++...|++++|+++++++++.. |++. .++..+|.++.+.|
T Consensus 78 -~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~-------~~~~~l~~~~~~~g 125 (125)
T 1na0_A 78 -EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNA-------EAKQNLGNAKQKQG 125 (125)
T ss_dssp -HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCH-------HHHHHHHHHHHHHC
T ss_pred -HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcH-------HHHHHHHHHHHhcc
Confidence 267789999999999999999999999997 8877 89999999987765
No 99
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.33 E-value=2.6e-13 Score=144.52 Aligned_cols=132 Identities=13% Similarity=0.076 Sum_probs=116.6
Q ss_pred HHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHH
Q 008887 373 IALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVAS 452 (550)
Q Consensus 373 ~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~ 452 (550)
..+|..+...|++++|+++|+++++.+|++..+++++|.+|.+.|++++|++++++++++ +|.+. .++
T Consensus 10 ~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l-----~p~~~-------~~~ 77 (477)
T 1wao_1 10 KTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL-----DKKYI-------KGY 77 (477)
T ss_dssp SSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS-----CTTCH-------HHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-----CCCCH-------HHH
Confidence 356777889999999999999999999999999999999999999999999999999999 88776 378
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHH--HHhcCCHHHHHHHHH-----------HHHH
Q 008887 453 QWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASA--LCNVGRNAEAEKYLR-----------LAAA 519 (550)
Q Consensus 453 ~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~--~~~~g~~~eA~~~l~-----------~al~ 519 (550)
+++|.++..+|++++|++.|+++++.+ |++. .++..++.+ +.+.|++++|++.++ ++++
T Consensus 78 ~~lg~~~~~~g~~~eA~~~~~~al~~~-p~~~-------~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~ 149 (477)
T 1wao_1 78 YRRAASNMALGKFRAALRDYETVVKVK-PHDK-------DAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMT 149 (477)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCT-------THHHHHHHHHHHHHHHHHCCC------CCSTTTCCTTSSCC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCH-------HHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhhhcc
Confidence 899999999999999999999999998 8887 888899988 889999999999999 7777
Q ss_pred cCCCc
Q 008887 520 HNPQY 524 (550)
Q Consensus 520 ~~p~~ 524 (550)
++|++
T Consensus 150 ~~~~~ 154 (477)
T 1wao_1 150 IEDEY 154 (477)
T ss_dssp CCTTC
T ss_pred ccccc
Confidence 77654
No 100
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.33 E-value=1.3e-11 Score=131.87 Aligned_cols=138 Identities=19% Similarity=0.250 Sum_probs=68.0
Q ss_pred HHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHH
Q 008887 373 IALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVAS 452 (550)
Q Consensus 373 ~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~ 452 (550)
..+|..+...|++++|++.++++++.+|+ ..++..+|.++...|++++|+++++++++. +|.++ .++
T Consensus 247 ~~~g~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~-------~~~ 313 (537)
T 3fp2_A 247 CYTGIFHFLKNNLLDAQVLLQESINLHPT-PNSYIFLALTLADKENSQEFFKFFQKAVDL-----NPEYP-------PTY 313 (537)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHTCCSSCCHHHHHHHHHHHHH-----CTTCH-------HHH
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHhcCHHHHHHHHHHHhcc-----CCCCH-------HHH
Confidence 34444555555555555555555555554 445555555555555555555555555554 44333 134
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHHHHHH
Q 008887 453 QWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQL 531 (550)
Q Consensus 453 ~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~l 531 (550)
..+|.++...|++++|++.|+++++.. |++. .++..+|.++...|++++|...++++++.+|++...+..+
T Consensus 314 ~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~-------~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l 384 (537)
T 3fp2_A 314 YHRGQMYFILQDYKNAKEDFQKAQSLN-PENV-------YPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFF 384 (537)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCS-------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHH
Confidence 445555555555555555555555544 4444 4455555555555555555555555555555444444333
No 101
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.33 E-value=2.2e-11 Score=104.14 Aligned_cols=115 Identities=17% Similarity=0.211 Sum_probs=88.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCc
Q 008887 405 ALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEP 484 (550)
Q Consensus 405 a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~ 484 (550)
+++.+|..+...|++++|++.|+++++. +|.++... .+++.+|.++...|++++|++.|+++++.. |++.
T Consensus 4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~-----~p~~~~~~----~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~-p~~~ 73 (129)
T 2xev_A 4 TAYNVAFDALKNGKYDDASQLFLSFLEL-----YPNGVYTP----NALYWLGESYYATRNFQLAEAQFRDLVSRY-PTHD 73 (129)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CSSSTTHH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTST
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHH-----CCCCcccH----HHHHHHHHHHHHhccHHHHHHHHHHHHHHC-CCCc
Confidence 4677888888888888888888888888 67665321 266678888888888888888888888886 7662
Q ss_pred cccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHHHHHHHh
Q 008887 485 KSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQLEN 533 (550)
Q Consensus 485 ~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~l~~ 533 (550)
....+++.+|.+|...|++++|+..|+++++..|++.........
T Consensus 74 ----~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~ 118 (129)
T 2xev_A 74 ----KAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQER 118 (129)
T ss_dssp ----THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHH
T ss_pred ----ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 122778888888888888888888888888888888776554444
No 102
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.33 E-value=6.7e-12 Score=134.20 Aligned_cols=150 Identities=15% Similarity=0.123 Sum_probs=123.9
Q ss_pred ChHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHH
Q 008887 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDL 447 (550)
Q Consensus 368 ~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~ 447 (550)
++..+..+|..+...|++++|+..++++++.+|++..++..+|.++...|++++|+++|+++++. +|.+......
T Consensus 343 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~-----~~~~~~~~~~ 417 (537)
T 3fp2_A 343 NVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRL-----EEVQEKIHVG 417 (537)
T ss_dssp CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----HHHCSSCSST
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHc-----CCcchhhHHH
Confidence 45667788888889999999999999999988988888999999999999999999999998888 3333311111
Q ss_pred HHHHHHHHHHHHHHh----------cCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008887 448 LIVASQWSGVACIRQ----------EKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLA 517 (550)
Q Consensus 448 l~~a~~~lg~~~~~~----------g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~a 517 (550)
+ ..++.+|.++... |++++|++.|+++++.. |++. .++..+|.+|...|++++|.+.|+++
T Consensus 418 ~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~a 488 (537)
T 3fp2_A 418 I-GPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSE-------QAKIGLAQLKLQMEKIDEAIELFEDS 488 (537)
T ss_dssp T-HHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCH-------HHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred H-HHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCH-------HHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 1 1355678899999 99999999999999997 8877 89999999999999999999999999
Q ss_pred HHcCCCcHHHHHHH
Q 008887 518 AAHNPQYNELLEQL 531 (550)
Q Consensus 518 l~~~p~~~~~~~~l 531 (550)
++++|+..+....+
T Consensus 489 l~~~~~~~~~~~~~ 502 (537)
T 3fp2_A 489 AILARTMDEKLQAT 502 (537)
T ss_dssp HHHC--CHHHHHHH
T ss_pred HHhCCCcHHHHHHH
Confidence 99999998866544
No 103
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.33 E-value=1.9e-11 Score=103.80 Aligned_cols=117 Identities=19% Similarity=0.237 Sum_probs=106.4
Q ss_pred hCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhc
Q 008887 398 KEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGN 477 (550)
Q Consensus 398 ~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~ 477 (550)
.+|.+...+..+|.++...|++++|+++++++++. +|.+. .+++.+|.++...|++++|++.++++++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~-------~~~~~~a~~~~~~~~~~~A~~~~~~~~~ 74 (131)
T 2vyi_A 7 EDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIEL-----NPANA-------VYFCNRAAAYSKLGNYAGAVQDCERAIC 74 (131)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCH-------HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cchhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHc-----CCCCH-------HHHHHHHHHHHHhhchHHHHHHHHHHHh
Confidence 34567789999999999999999999999999999 77765 3778899999999999999999999999
Q ss_pred CCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHHHHHHHhh
Q 008887 478 LKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQLENN 534 (550)
Q Consensus 478 ~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~l~~~ 534 (550)
.. |++. .++..+|.++...|++++|...++++++.+|++...+..+...
T Consensus 75 ~~-~~~~-------~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 123 (131)
T 2vyi_A 75 ID-PAYS-------KAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIA 123 (131)
T ss_dssp HC-TTCH-------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred cC-ccCH-------HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHH
Confidence 97 8777 8999999999999999999999999999999999888877663
No 104
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.32 E-value=5e-11 Score=100.21 Aligned_cols=116 Identities=26% Similarity=0.372 Sum_probs=103.4
Q ss_pred CCCC-hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhc
Q 008887 399 EPDN-INALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGN 477 (550)
Q Consensus 399 ~p~~-~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~ 477 (550)
+|.. ..+++.+|.++...|++++|+++++++++. +|.+. .+++.+|.++...|++++|+..++++++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~-------~~~~~la~~~~~~~~~~~A~~~~~~~~~ 71 (125)
T 1na0_A 4 DPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL-----DPNNA-------EAWYNLGNAYYKQGDYDEAIEYYQKALE 71 (125)
T ss_dssp ---CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCH-------HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-----CcCcH-------HHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4555 788999999999999999999999999999 77665 2677899999999999999999999999
Q ss_pred CCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHHHHHHHhh
Q 008887 478 LKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQLENN 534 (550)
Q Consensus 478 ~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~l~~~ 534 (550)
.. |.+. ..+..+|.++...|++++|...++++++.+|++...+..+...
T Consensus 72 ~~-~~~~-------~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 120 (125)
T 1na0_A 72 LD-PNNA-------EAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNA 120 (125)
T ss_dssp HC-TTCH-------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hC-CccH-------HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 87 8776 8999999999999999999999999999999999988877663
No 105
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.32 E-value=7e-12 Score=133.00 Aligned_cols=152 Identities=16% Similarity=0.087 Sum_probs=132.3
Q ss_pred ChHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHH
Q 008887 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDL 447 (550)
Q Consensus 368 ~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~ 447 (550)
++..+..+|..+...|++++|+..++++++.+|++..++..+|.++...|++++|+++++++++. +|.++....
T Consensus 337 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~-----~~~~~~~~~- 410 (514)
T 2gw1_A 337 NIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIEL-----ENKLDGIYV- 410 (514)
T ss_dssp CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----HHTSSSCSS-
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----hhccchHHH-
Confidence 56677789999999999999999999999999999999999999999999999999999999998 554432100
Q ss_pred HHHHHHHHHHHHHH---hcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCc
Q 008887 448 LIVASQWSGVACIR---QEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQY 524 (550)
Q Consensus 448 l~~a~~~lg~~~~~---~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~ 524 (550)
...+++.+|.++.. .|++++|++.++++++.. |++. .++..+|.+|.+.|++++|...|+++++++|++
T Consensus 411 ~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~-------~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 482 (514)
T 2gw1_A 411 GIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSE-------QAKIGLAQMKLQQEDIDEAITLFEESADLARTM 482 (514)
T ss_dssp CSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCH-------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSH
T ss_pred HHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccH-------HHHHHHHHHHHHhcCHHHHHHHHHHHHHhcccc
Confidence 00267789999999 999999999999999997 8777 899999999999999999999999999999999
Q ss_pred HHHHHHHHh
Q 008887 525 NELLEQLEN 533 (550)
Q Consensus 525 ~~~~~~l~~ 533 (550)
.+.+..+.-
T Consensus 483 ~~~~~~~~~ 491 (514)
T 2gw1_A 483 EEKLQAITF 491 (514)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 998776643
No 106
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.32 E-value=1.6e-11 Score=130.29 Aligned_cols=153 Identities=14% Similarity=0.107 Sum_probs=136.4
Q ss_pred ChHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHH
Q 008887 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDL 447 (550)
Q Consensus 368 ~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~ 447 (550)
++..+..+|..+...|++++|+..++++++.+|++..++..+|.++...|++++|+++++++++. +|.++ .
T Consensus 303 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~-~--- 373 (514)
T 2gw1_A 303 NSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRK-----FPEAP-E--- 373 (514)
T ss_dssp CTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH-----STTCS-H---
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-----cccCH-H---
Confidence 56677899999999999999999999999999999999999999999999999999999999999 77776 2
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHh---cCCHHHHHHHHHHHHHcCCCc
Q 008887 448 LIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCN---VGRNAEAEKYLRLAAAHNPQY 524 (550)
Q Consensus 448 l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~---~g~~~eA~~~l~~al~~~p~~ 524 (550)
+++.+|.++...|++++|++.++++++.. |++.... ....++..+|.++.. .|++++|...++++++.+|++
T Consensus 374 ---~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~ 448 (514)
T 2gw1_A 374 ---VPNFFAEILTDKNDFDKALKQYDLAIELE-NKLDGIY-VGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRS 448 (514)
T ss_dssp ---HHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HTSSSCS-SCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTC
T ss_pred ---HHHHHHHHHHHCCCHHHHHHHHHHHHHhh-hccchHH-HHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCccc
Confidence 77789999999999999999999999987 6664111 112499999999999 999999999999999999999
Q ss_pred HHHHHHHHhh
Q 008887 525 NELLEQLENN 534 (550)
Q Consensus 525 ~~~~~~l~~~ 534 (550)
...+..+...
T Consensus 449 ~~~~~~la~~ 458 (514)
T 2gw1_A 449 EQAKIGLAQM 458 (514)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9887776654
No 107
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.32 E-value=5.6e-12 Score=122.17 Aligned_cols=148 Identities=17% Similarity=0.078 Sum_probs=121.7
Q ss_pred hHHHHHHHHHHHHcCCCCChHHHHHHHHhh--------CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCC
Q 008887 369 PKELIALSVKFLSKGDKERPIPLLQLALNK--------EPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPT 440 (550)
Q Consensus 369 ~~~l~~la~~~~~~g~~~~A~~~~~~aL~~--------~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~ 440 (550)
+..+..+|..+...|++++|+.+++++++. +|....++..+|.+|...|++++|+++++++++.......+.
T Consensus 43 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 122 (283)
T 3edt_B 43 ATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKF 122 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCC
Confidence 445669999999999999999999999986 366678999999999999999999999999999854444454
Q ss_pred ChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 008887 441 EPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAH 520 (550)
Q Consensus 441 ~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~ 520 (550)
++.. ..++.++|.++...|++++|+++++++++........+......++..+|.+|...|++++|...+++++++
T Consensus 123 ~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 198 (283)
T 3edt_B 123 HPDV----AKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTR 198 (283)
T ss_dssp CHHH----HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred ChHH----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4433 247788999999999999999999999987200001111234588999999999999999999999999987
No 108
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.32 E-value=1.8e-12 Score=131.75 Aligned_cols=139 Identities=8% Similarity=0.045 Sum_probs=89.2
Q ss_pred hHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCCh-----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008887 369 PKELIALSVKFLSKGDKERPIPLLQLALNKEPDNI-----------------NALILMGQTQLQKGLLEEAVEYLECAIS 431 (550)
Q Consensus 369 ~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~-----------------~a~~~lg~~~~~~g~~~eA~~~~~~al~ 431 (550)
+..+..+|..++..|++++|+..|+++++.+|++. .+++++|.+|.+.|++++|+.+|+++++
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 258 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLT 258 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34556899999999999999999999999999877 4899999999999999999999999999
Q ss_pred HhhhcCCCCChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHH-HHhcCCHHHH
Q 008887 432 KLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASA-LCNVGRNAEA 510 (550)
Q Consensus 432 l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~-~~~~g~~~eA 510 (550)
+ +|.+. .+++++|.++..+|++++|+++|+++++++ |++. .++..++.+ ....++.+++
T Consensus 259 ~-----~p~~~-------~a~~~lg~a~~~~g~~~~A~~~l~~al~l~-p~~~-------~a~~~L~~l~~~~~~~~~~a 318 (338)
T 2if4_A 259 E-----EEKNP-------KALFRRGKAKAELGQMDSARDDFRKAQKYA-PDDK-------AIRRELRALAEQEKALYQKQ 318 (338)
T ss_dssp H-----CTTCH-------HHHHHHHHHHHTTTCHHHHHHHHHHTTC----------------------------------
T ss_pred h-----CCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCH-------HHHHHHHHHHHHHHHHHHHH
Confidence 9 88776 388899999999999999999999999998 8887 888889988 4566778899
Q ss_pred HHHHHHHHHcCCCcHHH
Q 008887 511 EKYLRLAAAHNPQYNEL 527 (550)
Q Consensus 511 ~~~l~~al~~~p~~~~~ 527 (550)
...|++++..+|++...
T Consensus 319 ~~~~~~~l~~~p~~~~~ 335 (338)
T 2if4_A 319 KEMYKGIFKGKDEGGAK 335 (338)
T ss_dssp -----------------
T ss_pred HHHHHHhhCCCCCCCCC
Confidence 99999999999887643
No 109
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.32 E-value=8.4e-12 Score=103.14 Aligned_cols=106 Identities=25% Similarity=0.245 Sum_probs=86.4
Q ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcC
Q 008887 399 EPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNL 478 (550)
Q Consensus 399 ~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~ 478 (550)
+|++..+++.+|.++...|++++|+.+++++++. +|.+. .+++++|.++...|++++|+++++++++.
T Consensus 2 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~-----~~~~~-------~~~~~~a~~~~~~~~~~~A~~~~~~a~~~ 69 (112)
T 2kck_A 2 VDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQL-----DPEES-------KYWLMKGKALYNLERYEEAVDCYNYVINV 69 (112)
T ss_dssp CCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHH-----CCCCH-------HHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred CCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-----CcCCH-------HHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 5777788888888888888888888888888888 66665 26677888888888888888888888888
Q ss_pred CCCC--CccccccchhHHHHHHHHHHhc-CCHHHHHHHHHHHHHcCCCc
Q 008887 479 KEPE--EPKSKAHYYDGLVVLASALCNV-GRNAEAEKYLRLAAAHNPQY 524 (550)
Q Consensus 479 ~~p~--~~~~~~~~~~~~~~La~~~~~~-g~~~eA~~~l~~al~~~p~~ 524 (550)
. |. +. .++..+|.++... |++++|++++++++..+|+.
T Consensus 70 ~-~~~~~~-------~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 110 (112)
T 2kck_A 70 I-EDEYNK-------DVWAAKADALRYIEGKEVEAEIAEARAKLEHHHH 110 (112)
T ss_dssp S-CCTTCH-------HHHHHHHHHHTTCSSCSHHHHHHHHHHGGGCCCC
T ss_pred C-cccchH-------HHHHHHHHHHHHHhCCHHHHHHHHHHHhhcccCC
Confidence 6 76 55 7888888888888 88888888888888887764
No 110
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.32 E-value=1.1e-11 Score=131.32 Aligned_cols=130 Identities=10% Similarity=0.099 Sum_probs=114.4
Q ss_pred hHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCC---------------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Q 008887 369 PKELIALSVKFLSKGDKERPIPLLQLALNKEPDN---------------INALILMGQTQLQKGLLEEAVEYLECAISKL 433 (550)
Q Consensus 369 ~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~---------------~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~ 433 (550)
+..+.++|..++..|++++|+..|+++++.+|++ ..+++++|.+|.+.|++++|+.+|++++++
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~- 346 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL- 346 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc-
Confidence 3456699999999999999999999999999998 699999999999999999999999999999
Q ss_pred hhcCCCCChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHH
Q 008887 434 FLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKY 513 (550)
Q Consensus 434 ~~~~~p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~ 513 (550)
+|.+. .+++++|.+|..+|++++|+..|+++++++ |++. .++..++.++...|++++|...
T Consensus 347 ----~p~~~-------~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~-------~a~~~l~~~~~~~~~~~~a~~~ 407 (457)
T 1kt0_A 347 ----DSANE-------KGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNK-------AARLQISMCQKKAKEHNERDRR 407 (457)
T ss_dssp ----STTCH-------HHHHHHHHHHHHTTCHHHHHHHHHHHHTTC------------CHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----CCccH-------HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCH-------HHHHHHHHHHHHHHHHHHHHHH
Confidence 88876 388999999999999999999999999998 8887 8999999999999999988754
Q ss_pred -HHHHH
Q 008887 514 -LRLAA 518 (550)
Q Consensus 514 -l~~al 518 (550)
+++.+
T Consensus 408 ~~~~~f 413 (457)
T 1kt0_A 408 IYANMF 413 (457)
T ss_dssp HHHHC-
T ss_pred HHHHHH
Confidence 44433
No 111
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.32 E-value=1.6e-11 Score=104.95 Aligned_cols=118 Identities=17% Similarity=0.168 Sum_probs=101.4
Q ss_pred HHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCCh---HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHH
Q 008887 370 KELIALSVKFLSKGDKERPIPLLQLALNKEPDNI---NALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAID 446 (550)
Q Consensus 370 ~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~---~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~ 446 (550)
+.++.+|..++..|++++|+..|+++++.+|++. .+++.+|.++...|++++|+++|+++++. +|+++...
T Consensus 3 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~-----~p~~~~~~- 76 (129)
T 2xev_A 3 RTAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSR-----YPTHDKAA- 76 (129)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTSTTHH-
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHH-----CCCCcccH-
Confidence 3567899999999999999999999999999998 89999999999999999999999999999 88774211
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhc
Q 008887 447 LLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNV 504 (550)
Q Consensus 447 ~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~ 504 (550)
.+++.+|.++...|++++|++.|+++++.. |++. .+...+..+....
T Consensus 77 ---~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~-------~~~~a~~~l~~l~ 123 (129)
T 2xev_A 77 ---GGLLKLGLSQYGEGKNTEAQQTLQQVATQY-PGSD-------AARVAQERLQSIR 123 (129)
T ss_dssp ---HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTSH-------HHHHHHHHHHHHC
T ss_pred ---HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCh-------HHHHHHHHHHHHH
Confidence 377889999999999999999999999997 8776 5555555444433
No 112
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.32 E-value=1.8e-11 Score=115.08 Aligned_cols=113 Identities=13% Similarity=0.167 Sum_probs=103.4
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHH----------------HHHHHHHhcCH
Q 008887 402 NINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQW----------------SGVACIRQEKW 465 (550)
Q Consensus 402 ~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~----------------lg~~~~~~g~~ 465 (550)
+++.+...|..+...|++++|+.+|+++++. +|.++ .++++ +|.++...|++
T Consensus 3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~-----~p~~~-------~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~ 70 (208)
T 3urz_A 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIAL-----NIDRT-------EMYYWTNVDKNSEISSKLATELALAYKKNRNY 70 (208)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CHHHH-------HHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCCh-------HHHHHhhhcchhhhhHHHHHHHHHHHHHCCCH
Confidence 5677889999999999999999999999999 66554 25666 99999999999
Q ss_pred HHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHHHHHHHhh
Q 008887 466 EEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQLENN 534 (550)
Q Consensus 466 ~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~l~~~ 534 (550)
++|++.|+++++.+ |++. .++..+|.+|...|++++|+..|+++++++|++..++..+...
T Consensus 71 ~~A~~~~~~al~~~-p~~~-------~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~ 131 (208)
T 3urz_A 71 DKAYLFYKELLQKA-PNNV-------DCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNY 131 (208)
T ss_dssp HHHHHHHHHHHHHC-TTCH-------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHC-CCCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 99999999999998 9888 9999999999999999999999999999999999988877654
No 113
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.32 E-value=1.1e-11 Score=110.31 Aligned_cols=115 Identities=10% Similarity=0.039 Sum_probs=93.4
Q ss_pred hHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCC-------ChH-----HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhc
Q 008887 369 PKELIALSVKFLSKGDKERPIPLLQLALNKEPD-------NIN-----ALILMGQTQLQKGLLEEAVEYLECAISKLFLA 436 (550)
Q Consensus 369 ~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~-------~~~-----a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~ 436 (550)
...+.+.|..++..|++++|+..|+++++.+|+ +.. +|.++|.++...|+|++|+.+|++++++.-..
T Consensus 11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~ 90 (159)
T 2hr2_A 11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 90 (159)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence 456679999999999999999999999999999 444 99999999999999999999999999881000
Q ss_pred CCCCChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCcc
Q 008887 437 GHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPK 485 (550)
Q Consensus 437 ~~p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~ 485 (550)
..-+|+....+..+++++|.++..+|++++|++.|+++++++ |++..
T Consensus 91 -~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~-p~d~~ 137 (159)
T 2hr2_A 91 -GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMI-EERKG 137 (159)
T ss_dssp -CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHCCS
T ss_pred -ccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHH
Confidence 011132322222233999999999999999999999999998 88773
No 114
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.31 E-value=2.7e-11 Score=105.73 Aligned_cols=117 Identities=15% Similarity=0.051 Sum_probs=106.4
Q ss_pred CChHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChh
Q 008887 367 LTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDN---INALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPE 443 (550)
Q Consensus 367 l~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~---~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~ 443 (550)
.+...++.+|..++..|++++|+++|+++++.+|++ ..+++.+|.+|...|++++|+++++++++. +|.+.
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-----~~~~~- 99 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEK-----DGGDV- 99 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----TSCCH-
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhh-----CccCH-
Confidence 367788899999999999999999999999999998 899999999999999999999999999999 78775
Q ss_pred hHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHh
Q 008887 444 AIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCN 503 (550)
Q Consensus 444 ~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~ 503 (550)
.+++.+|.++...|++++|+++|+++++.. |++. .++..++.+..+
T Consensus 100 ------~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~-------~~~~~l~~~~~~ 145 (148)
T 2dba_A 100 ------KALYRRSQALEKLGRLDQAVLDLQRCVSLE-PKNK-------VFQEALRNISGP 145 (148)
T ss_dssp ------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SSCH-------HHHHHHHHHHCS
T ss_pred ------HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcH-------HHHHHHHHHHhh
Confidence 377889999999999999999999999997 8777 778777776544
No 115
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.31 E-value=5.3e-12 Score=116.73 Aligned_cols=147 Identities=10% Similarity=-0.029 Sum_probs=119.0
Q ss_pred ChHHHHHHHHHHHHcCCCCChHHHHHHHHh------hCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCC
Q 008887 368 TPKELIALSVKFLSKGDKERPIPLLQLALN------KEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTE 441 (550)
Q Consensus 368 ~~~~l~~la~~~~~~g~~~~A~~~~~~aL~------~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~ 441 (550)
.+..+..+|..+...|++++|+.+++++++ ..+....++..+|.++...|++++|++++++++++.... +.+
T Consensus 25 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--~~~ 102 (203)
T 3gw4_A 25 ASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASL--PED 102 (203)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS--CCC
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc--Ccc
Confidence 455677999999999999999999999999 344567889999999999999999999999999985322 111
Q ss_pred hhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 008887 442 PEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHN 521 (550)
Q Consensus 442 ~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~ 521 (550)
+ .....+++++|.++...|++++|+++++++++.. +.. .+......++..+|.++...|++++|.+++++++++.
T Consensus 103 ~---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 177 (203)
T 3gw4_A 103 P---LAASANAYEVATVALHFGDLAGARQEYEKSLVYA-QQA-DDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIF 177 (203)
T ss_dssp H---HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-HHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred H---HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH-Hhc-cchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 1 1222478899999999999999999999999763 211 1122334667899999999999999999999999875
No 116
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.30 E-value=1e-11 Score=113.26 Aligned_cols=133 Identities=14% Similarity=0.036 Sum_probs=115.0
Q ss_pred ChHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHhhhcCCCCChhhHH
Q 008887 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQL-QKGLLEEAVEYLECAISKLFLAGHPTEPEAID 446 (550)
Q Consensus 368 ~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~-~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~ 446 (550)
+++.++.+|..+...|++++|+..++++++.+| ++..+..++.+.. ..++..+|++.++++++. +|+++ .
T Consensus 39 ~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~-----~P~~~-~-- 109 (176)
T 2r5s_A 39 RGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIAKLELHQQAAESPELKRLEQELAA-----NPDNF-E-- 109 (176)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHH-----STTCH-H--
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHHHHHHHhhcccchHHHHHHHHHHh-----CCCCH-H--
Confidence 677888999999999999999999999999999 8877777775543 334445689999999999 88887 3
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008887 447 LLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAA 519 (550)
Q Consensus 447 ~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~ 519 (550)
+++++|.++...|++++|++.|+++++.+ |+.. ...++..+|.++...|+.++|...|++++.
T Consensus 110 ----~~~~la~~~~~~g~~~~A~~~~~~~l~~~-p~~~-----~~~a~~~l~~~~~~~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 110 ----LACELAVQYNQVGRDEEALELLWNILKVN-LGAQ-----DGEVKKTFMDILSALGQGNAIASKYRRQLY 172 (176)
T ss_dssp ----HHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTTT-----TTHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHcccHHHHHHHHHHHHHhC-cccC-----hHHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence 78899999999999999999999999997 7642 116899999999999999999999999875
No 117
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.30 E-value=7.7e-12 Score=128.63 Aligned_cols=153 Identities=12% Similarity=0.097 Sum_probs=124.0
Q ss_pred HHHHHHHHcCCCCChHHHHHHHHhh---CC---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHH
Q 008887 374 ALSVKFLSKGDKERPIPLLQLALNK---EP---DNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDL 447 (550)
Q Consensus 374 ~la~~~~~~g~~~~A~~~~~~aL~~---~p---~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~ 447 (550)
..|..+...|++++|+.+|+++++. .+ ..+.+++.+|.+|...|++++|++++++++++. +........
T Consensus 108 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-----~~~~~~~~~ 182 (383)
T 3ulq_A 108 FRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIY-----KEHEAYNIR 182 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-----HTCSTTHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-----HhCccchHH
Confidence 4899999999999999999999996 23 356889999999999999999999999999994 333321233
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHH-----cC-
Q 008887 448 LIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAA-----HN- 521 (550)
Q Consensus 448 l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~-----~~- 521 (550)
...++.++|.++...|++++|+++|+++++.. +.. .+......++.++|.+|...|++++|+.+++++++ .+
T Consensus 183 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~-~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~ 260 (383)
T 3ulq_A 183 LLQCHSLFATNFLDLKQYEDAISHFQKAYSMA-EAE-KQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNIL 260 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCG
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH-HHc-CChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccc
Confidence 34588899999999999999999999999885 332 22334557899999999999999999999999999 34
Q ss_pred CCcHHHHHHHHh
Q 008887 522 PQYNELLEQLEN 533 (550)
Q Consensus 522 p~~~~~~~~l~~ 533 (550)
|.....+..+..
T Consensus 261 ~~~~~~~~~l~~ 272 (383)
T 3ulq_A 261 PSLPQAYFLITQ 272 (383)
T ss_dssp GGHHHHHHHHHH
T ss_pred hhHHHHHHHHHH
Confidence 555555555544
No 118
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.29 E-value=1.5e-11 Score=121.82 Aligned_cols=143 Identities=14% Similarity=0.081 Sum_probs=115.9
Q ss_pred HHHHHHHHHHcCCCCChHHHHHHHHhhCCCC------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhH
Q 008887 372 LIALSVKFLSKGDKERPIPLLQLALNKEPDN------INALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAI 445 (550)
Q Consensus 372 l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~------~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~ 445 (550)
.+.+|..+...|++++|+..++++++..+.. ..+++.+|.+|...|++++|+.+|+++++.... .+.+.
T Consensus 118 ~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~--~~~~~--- 192 (293)
T 2qfc_A 118 QYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEA--LHDNE--- 192 (293)
T ss_dssp HHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH--SCCCH---
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--cCccc---
Confidence 3478888999999999999999999865433 568999999999999999999999999966321 33332
Q ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHH-HHHHHHHHHcC
Q 008887 446 DLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEA-EKYLRLAAAHN 521 (550)
Q Consensus 446 ~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA-~~~l~~al~~~ 521 (550)
.....+++++|.+|..+|++++|+++++++++.. + +..+......+++++|.+|..+|++++| ..++++++.+.
T Consensus 193 ~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~-~-~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~ 267 (293)
T 2qfc_A 193 EFDVKVRYNHAKALYLDSRYEESLYQVNKAIEIS-C-RINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-H-HTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred cchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHH-H-hcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 1111378899999999999999999999999874 2 2223334568999999999999999999 88899998764
No 119
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.29 E-value=1.1e-10 Score=113.74 Aligned_cols=128 Identities=17% Similarity=0.187 Sum_probs=90.2
Q ss_pred ChHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHhhhcCCCCChh
Q 008887 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQ----KGLLEEAVEYLECAISKLFLAGHPTEPE 443 (550)
Q Consensus 368 ~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~----~g~~~eA~~~~~~al~l~~~~~~p~~~~ 443 (550)
+++.++.+|..+...|++++|+++|+++++ ++++.+++.+|.+|.. .+++++|+++|+++++. + ++
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~-----~--~~- 74 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL-----N--YS- 74 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-----T--CH-
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHC-----C--CH-
Confidence 455666777777777777777777777776 6667777777777777 77777777777777766 2 22
Q ss_pred hHHHHHHHHHHHHHHHHH----hcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHh----cCCHHHHHHHHH
Q 008887 444 AIDLLIVASQWSGVACIR----QEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCN----VGRNAEAEKYLR 515 (550)
Q Consensus 444 ~~~~l~~a~~~lg~~~~~----~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~----~g~~~eA~~~l~ 515 (550)
.+++++|.++.. .+++++|+++|+++++.+ ++ .++..+|.+|.. .|++++|+.+|+
T Consensus 75 ------~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~-------~a~~~lg~~~~~~~~~~~~~~~A~~~~~ 138 (273)
T 1ouv_A 75 ------NGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YA-------EGCASLGGIYHDGKVVTRDFKKAVEYFT 138 (273)
T ss_dssp ------HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CH-------HHHHHHHHHHHHCSSSCCCHHHHHHHHH
T ss_pred ------HHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---Cc-------cHHHHHHHHHHcCCCcccCHHHHHHHHH
Confidence 256667777777 777777777777777653 22 667777777777 777777777777
Q ss_pred HHHHcC
Q 008887 516 LAAAHN 521 (550)
Q Consensus 516 ~al~~~ 521 (550)
++++.+
T Consensus 139 ~a~~~~ 144 (273)
T 1ouv_A 139 KACDLN 144 (273)
T ss_dssp HHHHTT
T ss_pred HHHhcC
Confidence 777654
No 120
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.29 E-value=1.8e-11 Score=118.60 Aligned_cols=148 Identities=18% Similarity=0.176 Sum_probs=122.0
Q ss_pred hHHHHHHHHHHHHcCCCCChHHHHHHHHhh--------CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCC
Q 008887 369 PKELIALSVKFLSKGDKERPIPLLQLALNK--------EPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPT 440 (550)
Q Consensus 369 ~~~l~~la~~~~~~g~~~~A~~~~~~aL~~--------~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~ 440 (550)
...+..+|..+...|++++|+++++++++. +|....++..+|.+|...|++++|+++++++++.......+.
T Consensus 85 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 164 (283)
T 3edt_B 85 AATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPD 164 (283)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTT
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Confidence 446679999999999999999999999997 467788999999999999999999999999999854444444
Q ss_pred ChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCC-------------------------------------
Q 008887 441 EPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEE------------------------------------- 483 (550)
Q Consensus 441 ~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~------------------------------------- 483 (550)
++... .++.++|.++...|++++|+++++++++.. +..
T Consensus 165 ~~~~~----~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (283)
T 3edt_B 165 DPNVA----KTKNNLASCYLKQGKYQDAETLYKEILTRA-HEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGS 239 (283)
T ss_dssp CHHHH----HHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-HHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC---------
T ss_pred CHHHH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHH
Confidence 44322 477789999999999999999999999762 110
Q ss_pred -----ccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 008887 484 -----PKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHN 521 (550)
Q Consensus 484 -----~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~ 521 (550)
...+.....++..+|.+|...|++++|..+++++++..
T Consensus 240 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 282 (283)
T 3edt_B 240 WYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRNR 282 (283)
T ss_dssp ---CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 01223456789999999999999999999999998753
No 121
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.29 E-value=1.1e-11 Score=121.17 Aligned_cols=149 Identities=15% Similarity=0.131 Sum_probs=125.5
Q ss_pred ChHHHH-HHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHH
Q 008887 368 TPKELI-ALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAID 446 (550)
Q Consensus 368 ~~~~l~-~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~ 446 (550)
+++++. ..|..+...|+|++|.+.|+.++..+|++. +++.+|.++.+.|+|++|+.+|+++... + ++.
T Consensus 100 ~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~------~-d~~--- 168 (282)
T 4f3v_A 100 SPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKW------P-DKF--- 168 (282)
T ss_dssp SHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGC------S-CHH---
T ss_pred CHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhcc------C-Ccc---
Confidence 555554 889999999999999999999999999998 9999999999999999999999877544 1 121
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHH
Q 008887 447 LLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNE 526 (550)
Q Consensus 447 ~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~ 526 (550)
.-..+++++|.++..+|++++|+.+|++++.. +.++. ...++++++|.|+.++|+.++|...|++++..+|+ .+
T Consensus 169 ~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g--~~~P~---~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~ 242 (282)
T 4f3v_A 169 LAGAAGVAHGVAAANLALFTEAERRLTEANDS--PAGEA---CARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PK 242 (282)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--TTTTT---THHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HH
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcC--CCCcc---ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HH
Confidence 11137889999999999999999999999865 32221 13479999999999999999999999999999999 88
Q ss_pred HHHHHHh
Q 008887 527 LLEQLEN 533 (550)
Q Consensus 527 ~~~~l~~ 533 (550)
+...|..
T Consensus 243 ~~~aL~~ 249 (282)
T 4f3v_A 243 VAAALKD 249 (282)
T ss_dssp HHHHHHC
T ss_pred HHHHHhC
Confidence 8877765
No 122
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.28 E-value=1.3e-11 Score=123.46 Aligned_cols=147 Identities=15% Similarity=0.097 Sum_probs=119.3
Q ss_pred HHHHHHHHHHHHcCCCCChHHHHHHHHhhCCC------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChh
Q 008887 370 KELIALSVKFLSKGDKERPIPLLQLALNKEPD------NINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPE 443 (550)
Q Consensus 370 ~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~------~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~ 443 (550)
..+.++|..+...|++++|+.+|+++++..+. ...++..+|.+|.. |++++|+++|++++++. +...
T Consensus 77 ~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~-----~~~~- 149 (307)
T 2ifu_A 77 KAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVF-----ENEE- 149 (307)
T ss_dssp HHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHH-----HHTT-
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHH-----HhCC-
Confidence 35568999999999999999999999997532 24678899999999 99999999999999993 2221
Q ss_pred hHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 008887 444 AIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQ 523 (550)
Q Consensus 444 ~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~ 523 (550)
.......++.++|.++..+|++++|+++|+++++.. ++... .......+..+|.++...|++++|..+|++++ ++|+
T Consensus 150 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~-~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~ 226 (307)
T 2ifu_A 150 RLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMY-KEMEN-YPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPG 226 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHTTC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTT
T ss_pred ChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HHcCC-hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCC
Confidence 112223478899999999999999999999999985 44331 22234578899999999999999999999999 9987
Q ss_pred cHH
Q 008887 524 YNE 526 (550)
Q Consensus 524 ~~~ 526 (550)
+..
T Consensus 227 ~~~ 229 (307)
T 2ifu_A 227 FSG 229 (307)
T ss_dssp STT
T ss_pred CCC
Confidence 653
No 123
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.28 E-value=8.2e-12 Score=112.06 Aligned_cols=119 Identities=19% Similarity=0.093 Sum_probs=103.0
Q ss_pred hHHHHHHHHHHHHcCCCCChHHHHHHHHhh------------------CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008887 369 PKELIALSVKFLSKGDKERPIPLLQLALNK------------------EPDNINALILMGQTQLQKGLLEEAVEYLECAI 430 (550)
Q Consensus 369 ~~~l~~la~~~~~~g~~~~A~~~~~~aL~~------------------~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al 430 (550)
+..+.+.|..++..|++++|+..|+++++. +|.+..+++++|.+|...|++++|+.++++++
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 456679999999999999999999999998 77778999999999999999999999999999
Q ss_pred HHhhhcCCCCChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCC
Q 008887 431 SKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGR 506 (550)
Q Consensus 431 ~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~ 506 (550)
++ +|.+. .+++.+|.++...|++++|++.|+++++++ |++. ..+...++.+....++
T Consensus 91 ~~-----~p~~~-------~a~~~~g~~~~~~g~~~~A~~~~~~al~l~-p~~~------~~~~~~l~~~~~~~~~ 147 (162)
T 3rkv_A 91 KR-----EETNE-------KALFRRAKARIAAWKLDEAEEDLKLLLRNH-PAAA------SVVAREMKIVTERRAE 147 (162)
T ss_dssp HH-----STTCH-------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-GGGH------HHHHHHHHHHHHHHHH
T ss_pred hc-----CCcch-------HHHHHHHHHHHHHhcHHHHHHHHHHHHhcC-CCCH------HHHHHHHHHHHHHHHH
Confidence 99 88887 388899999999999999999999999997 7654 1335566666554443
No 124
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.28 E-value=1.9e-11 Score=103.86 Aligned_cols=123 Identities=18% Similarity=0.138 Sum_probs=104.4
Q ss_pred hHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHH
Q 008887 369 PKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLL 448 (550)
Q Consensus 369 ~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l 448 (550)
++.++.+|..+...|++++|+.+|+++++.+|++..+++.+|.++...|++++|+.+++++++. +|.++......
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~~ 78 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEV-----GRENREDYRQI 78 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----HHHSTTCHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhh-----ccccchhHHHH
Confidence 4567799999999999999999999999999999999999999999999999999999999999 44432222222
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcC
Q 008887 449 IVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVG 505 (550)
Q Consensus 449 ~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g 505 (550)
..+++.+|.++...|++++|+++|+++++.. | +. .....++.++...+
T Consensus 79 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~-~~-------~~~~~l~~~~~~~~ 126 (131)
T 1elr_A 79 AKAYARIGNSYFKEEKYKDAIHFYNKSLAEH-R-TP-------DVLKKCQQAEKILK 126 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-C-CH-------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-C-CH-------HHHHHHHHHHHHHH
Confidence 3478899999999999999999999999986 5 45 67777777766544
No 125
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.27 E-value=5.3e-11 Score=101.10 Aligned_cols=119 Identities=9% Similarity=0.090 Sum_probs=102.2
Q ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCC
Q 008887 401 DNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKE 480 (550)
Q Consensus 401 ~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~ 480 (550)
+.+..++.+|.++...|++++|+.+|+++++. +|.+. .+++.+|.++...|++++|+++++++++..
T Consensus 2 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-----~~~~~-------~~~~~la~~~~~~~~~~~A~~~~~~~~~~~- 68 (131)
T 1elr_A 2 KQALKEKELGNDAYKKKDFDTALKHYDKAKEL-----DPTNM-------TYITNQAAVYFEKGDYNKCRELCEKAIEVG- 68 (131)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCH-------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-
T ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc-----CCccH-------HHHHHHHHHHHHhccHHHHHHHHHHHHhhc-
Confidence 34678899999999999999999999999999 77765 377889999999999999999999999987
Q ss_pred CCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHHHHHHHh
Q 008887 481 PEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQLEN 533 (550)
Q Consensus 481 p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~l~~ 533 (550)
|.+..+......+++.+|.+|...|++++|.+.++++++.+| +......+..
T Consensus 69 ~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~ 120 (131)
T 1elr_A 69 RENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQ 120 (131)
T ss_dssp HHSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHH
T ss_pred cccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHH
Confidence 655333322358999999999999999999999999999998 4666666666
No 126
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.26 E-value=1.7e-11 Score=121.38 Aligned_cols=141 Identities=16% Similarity=0.096 Sum_probs=114.4
Q ss_pred HHHHHHHHcCCCCChHHHHHHHHhhCCCC------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHH
Q 008887 374 ALSVKFLSKGDKERPIPLLQLALNKEPDN------INALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDL 447 (550)
Q Consensus 374 ~la~~~~~~g~~~~A~~~~~~aL~~~p~~------~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~ 447 (550)
.+|..+...|++++|+.+|+++++..+.. ..++.++|.+|...|++++|+.+|+++++..... +.+ ...
T Consensus 120 ~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~--~~~---~~~ 194 (293)
T 3u3w_A 120 YVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEAL--HDN---EEF 194 (293)
T ss_dssp HHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS--SCC---HHH
T ss_pred HHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc--ccc---hhH
Confidence 58888888899999999999999964332 3478999999999999999999999999874221 112 223
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCC-HHHHHHHHHHHHHcC
Q 008887 448 LIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGR-NAEAEKYLRLAAAHN 521 (550)
Q Consensus 448 l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~-~~eA~~~l~~al~~~ 521 (550)
...+++++|.+|.++|++++|+++++++++.. +.. .+......+++.+|.+|..+|+ +++|.++|++++.+.
T Consensus 195 ~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~-~~~-~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~ 267 (293)
T 3u3w_A 195 DVKVRYNHAKALYLDSRYEESLYQVNKAIEIS-CRI-NSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHT-TBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH-HHc-CcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 33488999999999999999999999999875 322 2333456899999999999995 699999999998764
No 127
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.26 E-value=4.5e-11 Score=125.87 Aligned_cols=151 Identities=20% Similarity=0.070 Sum_probs=124.3
Q ss_pred HHHHHHHHHHHcCCCCChHHHHHHHHhh---------CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCC
Q 008887 371 ELIALSVKFLSKGDKERPIPLLQLALNK---------EPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTE 441 (550)
Q Consensus 371 ~l~~la~~~~~~g~~~~A~~~~~~aL~~---------~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~ 441 (550)
....+|..+...|++++|++.|++|+++ +|....++.++|.+|...|++++|+.++++++++.....++.+
T Consensus 53 ~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~ 132 (472)
T 4g1t_A 53 MCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYR 132 (472)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccc
Confidence 3447999999999999999999999985 5777889999999999999999999999999998655444444
Q ss_pred hhhHHHHHHHHHHHHHHHHHh--cCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHH---hcCCHHHHHHHHHH
Q 008887 442 PEAIDLLIVASQWSGVACIRQ--EKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALC---NVGRNAEAEKYLRL 516 (550)
Q Consensus 442 ~~~~~~l~~a~~~lg~~~~~~--g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~---~~g~~~eA~~~l~~ 516 (550)
.... ..+.++|.++... ++|++|+++|+++++++ |+++ +++..+|.++. ..|+.++|++.+++
T Consensus 133 ~~~~----~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~-------~~~~~~~~~~~~l~~~~~~~~al~~~~~ 200 (472)
T 4g1t_A 133 IESP----ELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNP-------EFTSGLAIASYRLDNWPPSQNAIDPLRQ 200 (472)
T ss_dssp CCCH----HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCH-------HHHHHHHHHHHHHHHSCCCCCTHHHHHH
T ss_pred hhhH----HHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCH-------HHHHHHHHHHHHhcCchHHHHHHHHHHH
Confidence 3222 2555678777665 57999999999999998 9888 88888887754 56778899999999
Q ss_pred HHHcCCCcHHHHHHHHh
Q 008887 517 AAAHNPQYNELLEQLEN 533 (550)
Q Consensus 517 al~~~p~~~~~~~~l~~ 533 (550)
+++++|++...+..+..
T Consensus 201 al~l~p~~~~~~~~l~~ 217 (472)
T 4g1t_A 201 AIRLNPDNQYLKVLLAL 217 (472)
T ss_dssp HHHHCSSCHHHHHHHHH
T ss_pred HhhcCCcchHHHHHHHH
Confidence 99999999887766543
No 128
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.26 E-value=6.7e-11 Score=118.07 Aligned_cols=146 Identities=9% Similarity=-0.027 Sum_probs=118.7
Q ss_pred ChHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChH-HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHH
Q 008887 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNIN-ALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAID 446 (550)
Q Consensus 368 ~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~-a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~ 446 (550)
++..+..+|..+...|++++|.+.|+++++.+|+++. +|..+|.++...|++++|++.|+++++. +|... .
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~-----~p~~~-~-- 169 (308)
T 2ond_A 98 NMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED-----ARTRH-H-- 169 (308)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTS-----TTCCT-H--
T ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhc-----CCCCH-H--
Confidence 4556678999999999999999999999999999887 8999999999999999999999999988 66554 2
Q ss_pred HHHHHHHHHHHHHHH-hcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHc---CC
Q 008887 447 LLIVASQWSGVACIR-QEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAH---NP 522 (550)
Q Consensus 447 ~l~~a~~~lg~~~~~-~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~---~p 522 (550)
.+...+..... .|++++|++.|+++++.. |+++ .+|..+|..+.+.|++++|+..|+++++. .|
T Consensus 170 ----~~~~~a~~~~~~~~~~~~A~~~~~~al~~~-p~~~-------~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p 237 (308)
T 2ond_A 170 ----VYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIP-------EYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPP 237 (308)
T ss_dssp ----HHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCH-------HHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCG
T ss_pred ----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcH-------HHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCH
Confidence 33334444322 699999999999999987 8777 89999999999999999999999999995 45
Q ss_pred C-cHHHHHHHHh
Q 008887 523 Q-YNELLEQLEN 533 (550)
Q Consensus 523 ~-~~~~~~~l~~ 533 (550)
+ ....+..+..
T Consensus 238 ~~~~~l~~~~~~ 249 (308)
T 2ond_A 238 EKSGEIWARFLA 249 (308)
T ss_dssp GGCHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 3 5556555433
No 129
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.26 E-value=1.4e-11 Score=126.54 Aligned_cols=155 Identities=12% Similarity=0.009 Sum_probs=124.3
Q ss_pred HHHHHHHHHHcCCCCChHHHHHHHHhhC------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhH
Q 008887 372 LIALSVKFLSKGDKERPIPLLQLALNKE------PDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAI 445 (550)
Q Consensus 372 l~~la~~~~~~g~~~~A~~~~~~aL~~~------p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~ 445 (550)
.+..|..+...|++++|+.+|+++++.. +..+.+++.+|.+|...|++++|+.++++++++. +......
T Consensus 104 ~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~-----~~~~~~~ 178 (378)
T 3q15_A 104 LFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIY-----QNHPLYS 178 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-----HTSTTCH
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH-----HhCCCch
Confidence 3478999999999999999999999863 2356789999999999999999999999999993 3322112
Q ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHH-----c
Q 008887 446 DLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAA-----H 520 (550)
Q Consensus 446 ~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~-----~ 520 (550)
.....++.++|.++...|++++|+++|+++++.. +.. .+......++.++|.+|...|++++|+.+++++++ .
T Consensus 179 ~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~-~~~-~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~ 256 (378)
T 3q15_A 179 IRTIQSLFVIAGNYDDFKHYDKALPHLEAALELA-MDI-QNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKV 256 (378)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHT-TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHC
T ss_pred hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH-HHc-CCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhC
Confidence 2334588899999999999999999999999874 221 12224557899999999999999999999999999 6
Q ss_pred CCCcHHHHHHHHh
Q 008887 521 NPQYNELLEQLEN 533 (550)
Q Consensus 521 ~p~~~~~~~~l~~ 533 (550)
+|........+..
T Consensus 257 ~~~~~~~~~~la~ 269 (378)
T 3q15_A 257 PDLLPKVLFGLSW 269 (378)
T ss_dssp GGGHHHHHHHHHH
T ss_pred ChhHHHHHHHHHH
Confidence 6666555555554
No 130
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.26 E-value=1.5e-11 Score=126.47 Aligned_cols=145 Identities=14% Similarity=0.112 Sum_probs=119.2
Q ss_pred hHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCC-------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCC
Q 008887 369 PKELIALSVKFLSKGDKERPIPLLQLALNKEPD-------NINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTE 441 (550)
Q Consensus 369 ~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~-------~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~ 441 (550)
+..+..+|..+...|++++|+.+++++++..+. ...++..+|.+|...|++++|++++++++++. +..
T Consensus 143 a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-----~~~ 217 (383)
T 3ulq_A 143 AEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMA-----EAE 217 (383)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-----HHT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH-----HHc
Confidence 446679999999999999999999999997433 34689999999999999999999999999994 222
Q ss_pred hhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 008887 442 PEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHN 521 (550)
Q Consensus 442 ~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~ 521 (550)
. .......+++++|.++..+|++++|++++++++++. ... .+.+....++..+|.+|...|++++|..++++++++.
T Consensus 218 ~-~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~-~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 294 (383)
T 3ulq_A 218 K-QPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVF-EES-NILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYS 294 (383)
T ss_dssp T-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHT-TCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred C-ChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH-Hhh-ccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 2 222333488899999999999999999999999953 111 1112345899999999999999999999999999875
No 131
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.26 E-value=2e-11 Score=120.26 Aligned_cols=160 Identities=20% Similarity=0.220 Sum_probs=126.5
Q ss_pred hHHHHHHHHHHHHcCCCCChHHHHHHHHhh--------CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCC
Q 008887 369 PKELIALSVKFLSKGDKERPIPLLQLALNK--------EPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPT 440 (550)
Q Consensus 369 ~~~l~~la~~~~~~g~~~~A~~~~~~aL~~--------~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~ 440 (550)
.+.+..+|..+...|++++|+.+++++++. ++....++..+|.+|...|++++|+++++++++.......+.
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 456679999999999999999999999994 667788999999999999999999999999998842221133
Q ss_pred ChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCC-ccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008887 441 EPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEE-PKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAA 519 (550)
Q Consensus 441 ~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~-~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~ 519 (550)
++. ...++..+|.++...|++++|+++++++++.. ... ..+......++..+|.++...|++++|+++++++++
T Consensus 107 ~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 181 (311)
T 3nf1_A 107 HPA----VAATLNNLAVLYGKRGKYKEAEPLCKRALEIR-EKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALE 181 (311)
T ss_dssp CHH----HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH-HHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred ChH----HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHH-HHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 332 22478889999999999999999999999873 100 011124458899999999999999999999999999
Q ss_pred c--------CCCcHHHHHHHHh
Q 008887 520 H--------NPQYNELLEQLEN 533 (550)
Q Consensus 520 ~--------~p~~~~~~~~l~~ 533 (550)
. +|.....+..+..
T Consensus 182 ~~~~~~~~~~~~~~~~~~~la~ 203 (311)
T 3nf1_A 182 IYQTKLGPDDPNVAKTKNNLAS 203 (311)
T ss_dssp HHHHTSCTTCHHHHHHHHHHHH
T ss_pred HHHHHhCCCCHHHHHHHHHHHH
Confidence 8 4544444554443
No 132
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.25 E-value=1.4e-11 Score=104.35 Aligned_cols=91 Identities=15% Similarity=0.240 Sum_probs=81.1
Q ss_pred HcCCCCChHHHHHHHHhh---CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHH
Q 008887 381 SKGDKERPIPLLQLALNK---EPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGV 457 (550)
Q Consensus 381 ~~g~~~~A~~~~~~aL~~---~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~ 457 (550)
..|++++|+.+|+++++. +|++..+++.+|.+|...|++++|+++|+++++. +|.++ .+++++|.
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~-----~p~~~-------~~~~~l~~ 69 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQ-----FPNHQ-------ALRVFYAM 69 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCH-------HHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCch-------HHHHHHHH
Confidence 468999999999999999 6899999999999999999999999999999999 88886 37889999
Q ss_pred HHHHhcCHHHHHHHHHHHhcCCCCCCc
Q 008887 458 ACIRQEKWEEGIAHLERIGNLKEPEEP 484 (550)
Q Consensus 458 ~~~~~g~~~eA~~~~~~al~~~~p~~~ 484 (550)
++...|++++|++.++++++.. |+++
T Consensus 70 ~~~~~g~~~~A~~~~~~al~~~-p~~~ 95 (117)
T 3k9i_A 70 VLYNLGRYEQGVELLLKIIAET-SDDE 95 (117)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHH-CCCH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCcH
Confidence 9999999999999999999997 8776
No 133
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=99.24 E-value=1.4e-11 Score=130.81 Aligned_cols=152 Identities=13% Similarity=0.022 Sum_probs=128.4
Q ss_pred HHHHHHHHHHHcCCCCChHHHHHHHHhh-----CCCC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCCh
Q 008887 371 ELIALSVKFLSKGDKERPIPLLQLALNK-----EPDN---INALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEP 442 (550)
Q Consensus 371 ~l~~la~~~~~~g~~~~A~~~~~~aL~~-----~p~~---~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~ 442 (550)
...+.+..+..+|+|++|+.+++++|+. .+++ ...+.++|.+|..+|+|++|+.++++++++....-.+++|
T Consensus 311 ~~le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp 390 (490)
T 3n71_A 311 DTLEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNA 390 (490)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCH
Confidence 4456777888999999999999999984 3444 5678999999999999999999999999998777788887
Q ss_pred hhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 008887 443 EAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNP 522 (550)
Q Consensus 443 ~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p 522 (550)
... ..++++|.+|..+|++++|+.+|++|+++.....+.+|+...+....++.++.++|++++|...|+++.+..-
T Consensus 391 ~~a----~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~~ 466 (490)
T 3n71_A 391 QLG----MAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAAL 466 (490)
T ss_dssp HHH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHH----HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 432 4778999999999999999999999998764556677778889999999999999999999999999876544
Q ss_pred CcHH
Q 008887 523 QYNE 526 (550)
Q Consensus 523 ~~~~ 526 (550)
++..
T Consensus 467 ~~~~ 470 (490)
T 3n71_A 467 NNQP 470 (490)
T ss_dssp TC--
T ss_pred cCCC
Confidence 4443
No 134
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.24 E-value=2e-11 Score=125.57 Aligned_cols=124 Identities=16% Similarity=0.220 Sum_probs=114.0
Q ss_pred HHHHHHHHHHHHcCCCCChHHHHHHHHh----------------hCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Q 008887 370 KELIALSVKFLSKGDKERPIPLLQLALN----------------KEPDNINALILMGQTQLQKGLLEEAVEYLECAISKL 433 (550)
Q Consensus 370 ~~l~~la~~~~~~g~~~~A~~~~~~aL~----------------~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~ 433 (550)
..+..+|..++..|++++|++.|+++++ .+|.+..+++++|.+|.+.|++++|++++++++++
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~- 302 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI- 302 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh-
Confidence 3456899999999999999999999999 77888999999999999999999999999999999
Q ss_pred hhcCCCCChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHH
Q 008887 434 FLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKY 513 (550)
Q Consensus 434 ~~~~~p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~ 513 (550)
+|.+. .+++.+|.++..+|++++|++.|+++++++ |++. .++..++.++...++++++.+.
T Consensus 303 ----~p~~~-------~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~-------~~~~~l~~~~~~~~~~~~a~k~ 363 (370)
T 1ihg_A 303 ----DPSNT-------KALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDK-------AIQAELLKVKQKIKAQKDKEKA 363 (370)
T ss_dssp ----CTTCH-------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCH-------HHHHHHHHHHHHHHHHHHHHHC
T ss_pred ----CchhH-------HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCH-------HHHHHHHHHHHHHHHHHHHHHH
Confidence 88776 388899999999999999999999999998 8887 8999999999999998888754
No 135
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.24 E-value=8.6e-11 Score=110.77 Aligned_cols=144 Identities=13% Similarity=0.085 Sum_probs=123.0
Q ss_pred ChHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcC----CHHHHHHHHHHHHHHhhhcCCCCChh
Q 008887 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKG----LLEEAVEYLECAISKLFLAGHPTEPE 443 (550)
Q Consensus 368 ~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g----~~~eA~~~~~~al~l~~~~~~p~~~~ 443 (550)
+++..+.+|..+...+++++|+.+|+++.+. +++.+++.+|.+|.. + ++++|+++|+++.+. .++
T Consensus 17 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~-------g~~- 85 (212)
T 3rjv_A 17 DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--GDGDALALLAQLKIR-NPQQADYPQARQLAEKAVEA-------GSK- 85 (212)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHT-------TCH-
T ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHC-------CCH-
Confidence 7888999999999999999999999999875 689999999999998 7 999999999999665 233
Q ss_pred hHHHHHHHHHHHHHHHHH----hcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHh----cCCHHHHHHHHH
Q 008887 444 AIDLLIVASQWSGVACIR----QEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCN----VGRNAEAEKYLR 515 (550)
Q Consensus 444 ~~~~l~~a~~~lg~~~~~----~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~----~g~~~eA~~~l~ 515 (550)
.+++++|.+|.. .+++++|+++|+++++.. +.+ ....+++.||.+|.. .+++++|+.+|+
T Consensus 86 ------~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~-~~~-----~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 153 (212)
T 3rjv_A 86 ------SGEIVLARVLVNRQAGATDVAHAITLLQDAARDS-ESD-----AAVDAQMLLGLIYASGVHGPEDDVKASEYFK 153 (212)
T ss_dssp ------HHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSST-TSH-----HHHHHHHHHHHHHHHTSSSSCCHHHHHHHHH
T ss_pred ------HHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcC-CCc-----chHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 378899999988 899999999999999986 421 012899999999999 889999999999
Q ss_pred HHHHcCCCcHHHHHHHHhhH
Q 008887 516 LAAAHNPQYNELLEQLENND 535 (550)
Q Consensus 516 ~al~~~p~~~~~~~~l~~~~ 535 (550)
++.+. +++..+...+....
T Consensus 154 ~A~~~-~~~~~a~~~Lg~~y 172 (212)
T 3rjv_A 154 GSSSL-SRTGYAEYWAGMMF 172 (212)
T ss_dssp HHHHT-SCTTHHHHHHHHHH
T ss_pred HHHHc-CCCHHHHHHHHHHH
Confidence 99998 55666666665543
No 136
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.23 E-value=3.9e-11 Score=118.14 Aligned_cols=148 Identities=17% Similarity=0.101 Sum_probs=119.5
Q ss_pred hHHHHHHHHHHHHcCCCCChHHHHHHHHhh--------CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCC
Q 008887 369 PKELIALSVKFLSKGDKERPIPLLQLALNK--------EPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPT 440 (550)
Q Consensus 369 ~~~l~~la~~~~~~g~~~~A~~~~~~aL~~--------~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~ 440 (550)
...+..+|..+...|++++|+.+++++++. ++....++..+|.+|...|++++|+++++++++.......+.
T Consensus 69 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 148 (311)
T 3nf1_A 69 ATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKD 148 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCC
Confidence 446679999999999999999999999986 356678899999999999999999999999998842221233
Q ss_pred ChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 008887 441 EPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAH 520 (550)
Q Consensus 441 ~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~ 520 (550)
++.. ..++.++|.++...|++++|+++++++++........+......++..+|.+|...|++++|...++++++.
T Consensus 149 ~~~~----~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 224 (311)
T 3nf1_A 149 HPDV----AKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTR 224 (311)
T ss_dssp CHHH----HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred ChHH----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3322 247788999999999999999999999987211111112244588999999999999999999999999975
No 137
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.23 E-value=6.4e-11 Score=121.64 Aligned_cols=145 Identities=12% Similarity=0.134 Sum_probs=118.0
Q ss_pred hHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCC-------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCC
Q 008887 369 PKELIALSVKFLSKGDKERPIPLLQLALNKEPD-------NINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTE 441 (550)
Q Consensus 369 ~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~-------~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~ 441 (550)
+..+..+|..+...|++++|+.+++++++..+. ...++..+|.+|...|++++|+++|++++++....
T Consensus 141 a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~----- 215 (378)
T 3q15_A 141 AEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDI----- 215 (378)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHc-----
Confidence 446679999999999999999999999986432 35678899999999999999999999999984222
Q ss_pred hhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 008887 442 PEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHN 521 (550)
Q Consensus 442 ~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~ 521 (550)
. .......+++++|.++..+|++++|+++++++++.. ... ..+....++..+|.+|.+.|++++|..++++++++.
T Consensus 216 ~-~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~-~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 291 (378)
T 3q15_A 216 Q-NDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVS-REK--VPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHI 291 (378)
T ss_dssp T-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-HHH--CGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred C-CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH-Hhh--CChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 1 112333488899999999999999999999999932 100 001224899999999999999999999999999985
Q ss_pred C
Q 008887 522 P 522 (550)
Q Consensus 522 p 522 (550)
+
T Consensus 292 ~ 292 (378)
T 3q15_A 292 T 292 (378)
T ss_dssp C
T ss_pred H
Confidence 4
No 138
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.23 E-value=2e-10 Score=102.15 Aligned_cols=112 Identities=14% Similarity=0.159 Sum_probs=101.4
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCC
Q 008887 402 NINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEP 481 (550)
Q Consensus 402 ~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p 481 (550)
.+..++.+|.++...|++++|+.+|+++++. +|.+. .+++++|.++...|++++|+++++++++.. |
T Consensus 12 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-----~~~~~-------~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~ 78 (166)
T 1a17_A 12 RAEELKTQANDYFKAKDYENAIKFYSQAIEL-----NPSNA-------IYYGNRSLAYLRTECYGYALGDATRAIELD-K 78 (166)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----STTCH-------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----CCCCh-------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-c
Confidence 3577899999999999999999999999999 77765 377889999999999999999999999997 8
Q ss_pred CCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHHHHHHHh
Q 008887 482 EEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQLEN 533 (550)
Q Consensus 482 ~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~l~~ 533 (550)
.+. .++..+|.++...|++++|...++++++.+|++...+..+..
T Consensus 79 ~~~-------~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~ 123 (166)
T 1a17_A 79 KYI-------KGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQE 123 (166)
T ss_dssp TCH-------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred ccH-------HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 777 899999999999999999999999999999999887654433
No 139
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.23 E-value=2.3e-11 Score=120.37 Aligned_cols=134 Identities=10% Similarity=0.055 Sum_probs=122.6
Q ss_pred ChHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHH
Q 008887 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDL 447 (550)
Q Consensus 368 ~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~ 447 (550)
+++.++.+|..+...|++++|+..++++++.+|+........+..+...++.++|++.|+++++. +|++. .
T Consensus 150 ~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~-----~P~~~-~--- 220 (287)
T 3qou_A 150 NGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAE-----NPEDA-A--- 220 (287)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHH-----CTTCH-H---
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHHHhhcccCccHHHHHHHHhc-----CCccH-H---
Confidence 67788899999999999999999999999999987777888888899999999999999999999 88887 3
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008887 448 LIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAA 519 (550)
Q Consensus 448 l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~ 519 (550)
+++++|.++...|++++|++.|+++++.+ |++. ...++..++.++...|+.++|...|++++.
T Consensus 221 ---~~~~la~~l~~~g~~~~A~~~l~~~l~~~-p~~~-----~~~a~~~l~~~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 221 ---LATQLALQLHQVGRNEEALELLFGHLRXD-LTAA-----DGQTRXTFQEILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp ---HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTGG-----GGHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHcccHHHHHHHHHHHHhcc-cccc-----cchHHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence 88899999999999999999999999997 8761 128999999999999999999999999876
No 140
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.23 E-value=1.4e-10 Score=114.47 Aligned_cols=105 Identities=16% Similarity=0.122 Sum_probs=98.6
Q ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCC
Q 008887 400 PDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLK 479 (550)
Q Consensus 400 p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~ 479 (550)
|.++..++.+|..+...|++++|+++|+++++. +|.+. .+++++|.++...|++++|++.++++++.+
T Consensus 1 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~-----~p~~~-------~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 68 (281)
T 2c2l_A 1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITR-----NPLVA-------VYYTNRALCYLKMQQPEQALADCRRALELD 68 (281)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CSCCH-------HHHHHHHHHHHHTTCHHHHHHHHHHHTTSC
T ss_pred ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCccH-------HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 567889999999999999999999999999999 88876 378899999999999999999999999998
Q ss_pred CCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCc
Q 008887 480 EPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQY 524 (550)
Q Consensus 480 ~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~ 524 (550)
|++. .+++.+|.+|..+|++++|+..|+++++++|++
T Consensus 69 -p~~~-------~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~ 105 (281)
T 2c2l_A 69 -GQSV-------KAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQ 105 (281)
T ss_dssp -TTCH-------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred -CCCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc
Confidence 8877 999999999999999999999999999999865
No 141
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.22 E-value=8.6e-11 Score=116.35 Aligned_cols=144 Identities=13% Similarity=-0.040 Sum_probs=115.9
Q ss_pred HHHHHHHHHHcCCCCChHHHHHHHHhhCCCChH------HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhH
Q 008887 372 LIALSVKFLSKGDKERPIPLLQLALNKEPDNIN------ALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAI 445 (550)
Q Consensus 372 l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~------a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~ 445 (550)
+.+.+..+...|++++|+..++++++..+.+.. .+..+|.++...|++++|+.+++++++. .+......
T Consensus 78 l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~-----~~~~~~~~ 152 (293)
T 3u3w_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQ-----QLTGIDVY 152 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHT-----CCCCSCTT
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHH-----hcccccHH
Confidence 346688899999999999999999998776655 3346899999999999999999999997 33333221
Q ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 008887 446 DLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNP 522 (550)
Q Consensus 446 ~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p 522 (550)
....++.++|.+|..+|++++|+++|+++++.. ...+.+......+++++|.+|.++|++++|+.++++++++.+
T Consensus 153 -~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~ 227 (293)
T 3u3w_A 153 -QNLYIENAIANIYAENGYLKKGIDLFEQILKQL-EALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISC 227 (293)
T ss_dssp -HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 222378899999999999999999999999643 222223345567999999999999999999999999998763
No 142
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.20 E-value=5e-10 Score=109.10 Aligned_cols=138 Identities=13% Similarity=0.076 Sum_probs=102.4
Q ss_pred ChHHHHHHHHHHHH----cCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHhhhcCCC
Q 008887 368 TPKELIALSVKFLS----KGDKERPIPLLQLALNKEPDNINALILMGQTQLQ----KGLLEEAVEYLECAISKLFLAGHP 439 (550)
Q Consensus 368 ~~~~l~~la~~~~~----~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~----~g~~~eA~~~~~~al~l~~~~~~p 439 (550)
++...+.+|..+.. .+++++|+.+|+++++. +++.+++.+|.+|.. .+++++|+++|+++++. +
T Consensus 73 ~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~-----~- 144 (273)
T 1ouv_A 73 YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDL--KYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL-----N- 144 (273)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT-----T-
T ss_pred CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHc--CCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhc-----C-
Confidence 55667788888888 88888888888888876 377888888888888 88888888888888776 2
Q ss_pred CChhhHHHHHHHHHHHHHHHHH----hcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHh----cCCHHHHH
Q 008887 440 TEPEAIDLLIVASQWSGVACIR----QEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCN----VGRNAEAE 511 (550)
Q Consensus 440 ~~~~~~~~l~~a~~~lg~~~~~----~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~----~g~~~eA~ 511 (550)
+. .+++++|.++.. .+++++|+++|+++++.. + + .+++.+|.+|.. .+++++|+
T Consensus 145 -~~-------~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~-~--~-------~a~~~lg~~~~~g~~~~~~~~~A~ 206 (273)
T 1ouv_A 145 -DG-------DGCTILGSLYDAGRGTPKDLKKALASYDKACDLK-D--S-------PGCFNAGNMYHHGEGATKNFKEAL 206 (273)
T ss_dssp -CH-------HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-C--H-------HHHHHHHHHHHHTCSSCCCHHHHH
T ss_pred -cH-------HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC-C--H-------HHHHHHHHHHHcCCCCCccHHHHH
Confidence 11 266678888877 788888888888887764 1 2 677788888888 88888888
Q ss_pred HHHHHHHHcCCCcHHHHHHHHh
Q 008887 512 KYLRLAAAHNPQYNELLEQLEN 533 (550)
Q Consensus 512 ~~l~~al~~~p~~~~~~~~l~~ 533 (550)
++++++++.++ ......+..
T Consensus 207 ~~~~~a~~~~~--~~a~~~l~~ 226 (273)
T 1ouv_A 207 ARYSKACELEN--GGGCFNLGA 226 (273)
T ss_dssp HHHHHHHHTTC--HHHHHHHHH
T ss_pred HHHHHHHhCCC--HHHHHHHHH
Confidence 88888877755 444444443
No 143
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.20 E-value=1e-10 Score=115.78 Aligned_cols=143 Identities=13% Similarity=-0.034 Sum_probs=114.2
Q ss_pred HHHHHHHHHHHcCCCCChHHHHHHHHhhCCCCh------HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhh
Q 008887 371 ELIALSVKFLSKGDKERPIPLLQLALNKEPDNI------NALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEA 444 (550)
Q Consensus 371 ~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~------~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~ 444 (550)
.+...+..+...|++++|++.++++++..+... ..++.+|.++...|++++|+++++++++. .+.....
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-----~~~~~~~ 151 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQ-----QLTGIDV 151 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTT-----CCCSSCT
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH-----HhcCCch
Confidence 345778889999999999999999999887654 34677999999999999999999999987 3332211
Q ss_pred HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCC--CCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 008887 445 IDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLK--EPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNP 522 (550)
Q Consensus 445 ~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~--~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p 522 (550)
. ....+++++|.+|..+|++++|+++|+++++.. .+++. .....+++++|.+|..+|++++|+.++++++++.+
T Consensus 152 ~-~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~---~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~ 227 (293)
T 2qfc_A 152 Y-QNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNE---EFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISC 227 (293)
T ss_dssp T-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCH---HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred H-HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccc---cchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 1 123488899999999999999999999999542 03221 11226899999999999999999999999998753
No 144
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.19 E-value=1.4e-10 Score=119.20 Aligned_cols=122 Identities=12% Similarity=0.136 Sum_probs=103.4
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCCh---------hhHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Q 008887 403 INALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEP---------EAIDLLIVASQWSGVACIRQEKWEEGIAHLE 473 (550)
Q Consensus 403 ~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~---------~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~ 473 (550)
+..+..+|..+...|++++|+++|+++++.. +..+ ........+++++|.++.++|++++|+++++
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~-----~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~ 297 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYV-----EGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCL 297 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-----HHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh-----hcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHH
Confidence 4668899999999999999999999999852 1100 0111223488899999999999999999999
Q ss_pred HHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHHHHHHHhhHHH
Q 008887 474 RIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQLENNDEE 537 (550)
Q Consensus 474 ~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~l~~~~~~ 537 (550)
++++.+ |++. .+++.+|.+|..+|++++|++.|+++++++|++..++..+..+...
T Consensus 298 ~al~~~-p~~~-------~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~ 353 (370)
T 1ihg_A 298 EALEID-PSNT-------KALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQK 353 (370)
T ss_dssp HHHTTC-TTCH-------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHhC-chhH-------HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 999998 8777 9999999999999999999999999999999999988888774433
No 145
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.19 E-value=8.6e-11 Score=96.90 Aligned_cols=104 Identities=17% Similarity=0.108 Sum_probs=94.6
Q ss_pred ChHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCC--ChhhH
Q 008887 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPT--EPEAI 445 (550)
Q Consensus 368 ~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~--~~~~~ 445 (550)
+++.++.+|..+...|++++|+..++++++.+|++..+++.+|.++...|++++|+++++++++. +|. +.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~-----~~~~~~~--- 76 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINV-----IEDEYNK--- 76 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-----SCCTTCH---
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----CcccchH---
Confidence 34456689999999999999999999999999999999999999999999999999999999999 777 54
Q ss_pred HHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHhcCCCCCCc
Q 008887 446 DLLIVASQWSGVACIRQ-EKWEEGIAHLERIGNLKEPEEP 484 (550)
Q Consensus 446 ~~l~~a~~~lg~~~~~~-g~~~eA~~~~~~al~~~~p~~~ 484 (550)
.+++.+|.++... |++++|+++++++++.. |.++
T Consensus 77 ----~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~-p~~~ 111 (112)
T 2kck_A 77 ----DVWAAKADALRYIEGKEVEAEIAEARAKLEH-HHHH 111 (112)
T ss_dssp ----HHHHHHHHHHTTCSSCSHHHHHHHHHHGGGC-CCCC
T ss_pred ----HHHHHHHHHHHHHhCCHHHHHHHHHHHhhcc-cCCC
Confidence 3778899999999 99999999999999997 6543
No 146
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.18 E-value=4.4e-11 Score=106.21 Aligned_cols=101 Identities=16% Similarity=0.223 Sum_probs=91.0
Q ss_pred HHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHHhcCH----------HHHHHHHHHHhcCCCCCC
Q 008887 414 LQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKW----------EEGIAHLERIGNLKEPEE 483 (550)
Q Consensus 414 ~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~g~~----------~eA~~~~~~al~~~~p~~ 483 (550)
.+.++|++|++.+++++++ +|.+. ++++++|.++...+++ ++|+..|+++++++ |++
T Consensus 13 ~r~~~feeA~~~~~~Ai~l-----~P~~a-------ea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld-P~~ 79 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKS-----NPLDA-------DNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKK 79 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHH-----CTTCH-------HHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTC
T ss_pred HHHhHHHHHHHHHHHHHHH-----CCCCH-------HHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC-cCc
Confidence 3567899999999999999 89888 3888899999998875 59999999999998 988
Q ss_pred ccccccchhHHHHHHHHHHhcC-----------CHHHHHHHHHHHHHcCCCcHHHHHHHHhh
Q 008887 484 PKSKAHYYDGLVVLASALCNVG-----------RNAEAEKYLRLAAAHNPQYNELLEQLENN 534 (550)
Q Consensus 484 ~~~~~~~~~~~~~La~~~~~~g-----------~~~eA~~~l~~al~~~p~~~~~~~~l~~~ 534 (550)
. ++++++|.+|..+| ++++|+++|+++++++|++..+++.++..
T Consensus 80 ~-------~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~~~ 134 (158)
T 1zu2_A 80 D-------EAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMT 134 (158)
T ss_dssp H-------HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred H-------HHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 8 99999999999875 89999999999999999999998887653
No 147
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.17 E-value=4.6e-11 Score=122.43 Aligned_cols=144 Identities=13% Similarity=0.037 Sum_probs=118.9
Q ss_pred HHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCCh------HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChh
Q 008887 370 KELIALSVKFLSKGDKERPIPLLQLALNKEPDNI------NALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPE 443 (550)
Q Consensus 370 ~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~------~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~ 443 (550)
..+..+|..+...|++++|+.+++++++..++.. .++..+|.+|...|++++|+++++++++.. +...
T Consensus 188 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-----~~~~- 261 (406)
T 3sf4_A 188 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLA-----RQLK- 261 (406)
T ss_dssp HHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-----HHTT-
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH-----HhCc-
Confidence 3556899999999999999999999999765443 389999999999999999999999999983 2222
Q ss_pred hHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 008887 444 AIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHN 521 (550)
Q Consensus 444 ~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~ 521 (550)
.......++..+|.++...|++++|+++++++++.. +... +......++..+|.+|...|++++|.+++++++++.
T Consensus 262 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~-~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 337 (406)
T 3sf4_A 262 DRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIA-QELN-DRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 337 (406)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHTT-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHH-HhcC-CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 122223478899999999999999999999999875 3321 223345789999999999999999999999999874
No 148
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.16 E-value=5.4e-11 Score=122.78 Aligned_cols=151 Identities=15% Similarity=0.068 Sum_probs=123.4
Q ss_pred hHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCCh------HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCCh
Q 008887 369 PKELIALSVKFLSKGDKERPIPLLQLALNKEPDNI------NALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEP 442 (550)
Q Consensus 369 ~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~------~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~ 442 (550)
...+..+|..+...|++++|+.+++++++..++.. .++..+|.+|...|++++|+++++++++.. +...
T Consensus 223 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-----~~~~ 297 (411)
T 4a1s_A 223 GRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALA-----VELG 297 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH-----HHTT
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHH-----HHcC
Confidence 34566999999999999999999999999776433 388999999999999999999999999983 2222
Q ss_pred hhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 008887 443 EAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNP 522 (550)
Q Consensus 443 ~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p 522 (550)
.......++..+|.++...|++++|+++++++++.. +.. .+......++..+|.+|...|++++|.+++++++++.+
T Consensus 298 -~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 374 (411)
T 4a1s_A 298 -EREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIA-QEL-GDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAX 374 (411)
T ss_dssp -CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHH-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred -CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HHC-CChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHh
Confidence 112223478899999999999999999999999875 322 12233457899999999999999999999999999987
Q ss_pred CcHHH
Q 008887 523 QYNEL 527 (550)
Q Consensus 523 ~~~~~ 527 (550)
.....
T Consensus 375 ~~~~~ 379 (411)
T 4a1s_A 375 XXXXX 379 (411)
T ss_dssp HHHHH
T ss_pred hcccc
Confidence 66543
No 149
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.14 E-value=8.8e-11 Score=99.31 Aligned_cols=100 Identities=20% Similarity=0.119 Sum_probs=84.0
Q ss_pred HcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHH
Q 008887 415 QKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGL 494 (550)
Q Consensus 415 ~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~ 494 (550)
..|++++|+.+|+++++. ++.++... .+++++|.++..+|++++|+++|+++++.+ |+++ .++
T Consensus 2 ~~g~~~~A~~~~~~al~~-----~~~~p~~~----~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~-------~~~ 64 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIAS-----GLQGKDLA----ECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQ-------ALR 64 (117)
T ss_dssp -----CCCHHHHHHHHSS-----CCCHHHHH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCH-------HHH
T ss_pred CCCcHHHHHHHHHHHHHc-----CCCCccHH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCch-------HHH
Confidence 468999999999999988 54444332 478899999999999999999999999998 8887 999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHHHHHH
Q 008887 495 VVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQL 531 (550)
Q Consensus 495 ~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~l 531 (550)
+.+|.++...|++++|+..++++++.+|++.......
T Consensus 65 ~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 101 (117)
T 3k9i_A 65 VFYAMVLYNLGRYEQGVELLLKIIAETSDDETIQSYK 101 (117)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHTH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHH
Confidence 9999999999999999999999999999998765533
No 150
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.14 E-value=6.4e-11 Score=117.32 Aligned_cols=147 Identities=12% Similarity=0.041 Sum_probs=117.2
Q ss_pred HHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCC------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChh
Q 008887 370 KELIALSVKFLSKGDKERPIPLLQLALNKEPDN------INALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPE 443 (550)
Q Consensus 370 ~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~------~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~ 443 (550)
..+..+|..+...|++++|+.+++++++..+.. ..++..+|.++...|++++|+++++++++.. +...
T Consensus 184 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-----~~~~- 257 (338)
T 3ro2_A 184 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLA-----RQLK- 257 (338)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-----HHTT-
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-----Hhhc-
Confidence 355689999999999999999999999865432 3488999999999999999999999999983 2222
Q ss_pred hHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 008887 444 AIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQ 523 (550)
Q Consensus 444 ~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~ 523 (550)
.......++..+|.++...|++++|+++++++++.. +... +......++..+|.+|...|++++|..++++++++.++
T Consensus 258 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~-~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 335 (338)
T 3ro2_A 258 DRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIA-QELK-DRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 335 (338)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHHT-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC---
T ss_pred chhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH-HhcC-CcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 122223478889999999999999999999999874 3221 22234568999999999999999999999999998765
Q ss_pred c
Q 008887 524 Y 524 (550)
Q Consensus 524 ~ 524 (550)
.
T Consensus 336 ~ 336 (338)
T 3ro2_A 336 V 336 (338)
T ss_dssp -
T ss_pred h
Confidence 4
No 151
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.13 E-value=4.8e-11 Score=119.20 Aligned_cols=142 Identities=15% Similarity=0.092 Sum_probs=115.6
Q ss_pred HHHHHHHHcCCCCChHHHHHHHHhhCCC------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHH
Q 008887 374 ALSVKFLSKGDKERPIPLLQLALNKEPD------NINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDL 447 (550)
Q Consensus 374 ~la~~~~~~g~~~~A~~~~~~aL~~~p~------~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~ 447 (550)
..|..+...|++++|+..|+++++..+. ...++..+|.+|...|++++|+.+|++++++....+++ ..
T Consensus 41 ~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~------~~ 114 (307)
T 2ifu_A 41 KAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTP------DT 114 (307)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCH------HH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCH------HH
Confidence 5678899999999999999999997643 25688999999999999999999999999994322211 12
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCc
Q 008887 448 LIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQY 524 (550)
Q Consensus 448 l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~ 524 (550)
...++.++|.+|.. |++++|+++|++++++. +... +......++.++|.+|.++|++++|+.+|++++++.+++
T Consensus 115 ~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~-~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 188 (307)
T 2ifu_A 115 AAMALDRAGKLMEP-LDLSKAVHLYQQAAAVF-ENEE-RLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEM 188 (307)
T ss_dssp HHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHH-HHTT-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHH-HhCC-ChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc
Confidence 23478899999998 99999999999999986 4321 112235789999999999999999999999999986543
No 152
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.13 E-value=1.5e-10 Score=119.50 Aligned_cols=146 Identities=14% Similarity=0.086 Sum_probs=121.3
Q ss_pred ChHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCCh----HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChh
Q 008887 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNI----NALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPE 443 (550)
Q Consensus 368 ~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~----~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~ 443 (550)
....++.+|..++..|++++|+.+|+++++.+|++. .++..+|.+|...|++++|++++++++++....++
T Consensus 47 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~----- 121 (411)
T 4a1s_A 47 MCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMND----- 121 (411)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC-----
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccC-----
Confidence 344667899999999999999999999999999987 58899999999999999999999999988432211
Q ss_pred hHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCC-----------------
Q 008887 444 AIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGR----------------- 506 (550)
Q Consensus 444 ~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~----------------- 506 (550)
......++..+|.++...|++++|+++++++++.. +. ..+......++..+|.+|...|+
T Consensus 122 -~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~-~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~ 198 (411)
T 4a1s_A 122 -RLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLA-RQ-LGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEA 198 (411)
T ss_dssp -HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HH-HTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHH
T ss_pred -chHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH-HH-hhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHH
Confidence 12223478899999999999999999999999884 22 11223455799999999999999
Q ss_pred HHHHHHHHHHHHHcC
Q 008887 507 NAEAEKYLRLAAAHN 521 (550)
Q Consensus 507 ~~eA~~~l~~al~~~ 521 (550)
+++|++++++++++.
T Consensus 199 ~~~A~~~~~~al~~~ 213 (411)
T 4a1s_A 199 LTRAVEFYQENLKLM 213 (411)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999988764
No 153
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.12 E-value=9.3e-12 Score=126.42 Aligned_cols=122 Identities=17% Similarity=0.187 Sum_probs=92.2
Q ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhh----------HHHHHHHHHHHHHHHHHhcCHHHHH
Q 008887 400 PDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEA----------IDLLIVASQWSGVACIRQEKWEEGI 469 (550)
Q Consensus 400 p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~----------~~~l~~a~~~lg~~~~~~g~~~eA~ 469 (550)
++.+..++.+|..+...|++++|+.+|+++++. +|.+... ......+++++|.++.++|++++|+
T Consensus 176 ~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~-----~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~ 250 (338)
T 2if4_A 176 IGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAY-----MGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAI 250 (338)
T ss_dssp HHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHH-----SCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH-----hccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 445677999999999999999999999999999 5544310 0001127889999999999999999
Q ss_pred HHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHHHHHHHhh
Q 008887 470 AHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQLENN 534 (550)
Q Consensus 470 ~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~l~~~ 534 (550)
++|+++++.+ |++. .+++++|.+|..+|++++|+..|+++++++|++..++..+...
T Consensus 251 ~~~~~al~~~-p~~~-------~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l 307 (338)
T 2if4_A 251 GHCNIVLTEE-EKNP-------KALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRAL 307 (338)
T ss_dssp HHHHHHHHHC-TTCH-------HHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------
T ss_pred HHHHHHHHhC-CCCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 9999999998 8777 9999999999999999999999999999999999988877763
No 154
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.12 E-value=3.6e-10 Score=118.91 Aligned_cols=147 Identities=19% Similarity=0.085 Sum_probs=119.4
Q ss_pred ChHHHHHHHHHHHH--cCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHH---cCCHHHHHHHHHHHHHHhhhcCCCCCh
Q 008887 368 TPKELIALSVKFLS--KGDKERPIPLLQLALNKEPDNINALILMGQTQLQ---KGLLEEAVEYLECAISKLFLAGHPTEP 442 (550)
Q Consensus 368 ~~~~l~~la~~~~~--~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~---~g~~~eA~~~~~~al~l~~~~~~p~~~ 442 (550)
.++...+.|..+.. .+++++|+++|+++++.+|+++.++..+|.++.. .++.++|++.+++++++ +|.+.
T Consensus 135 ~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l-----~p~~~ 209 (472)
T 4g1t_A 135 SPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRL-----NPDNQ 209 (472)
T ss_dssp CHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHH-----CSSCH
T ss_pred hHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhc-----CCcch
Confidence 34455567765554 4579999999999999999999999999988654 57778999999999999 88877
Q ss_pred hhHHHHHHHHHHHHHHH----HHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008887 443 EAIDLLIVASQWSGVAC----IRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAA 518 (550)
Q Consensus 443 ~~~~~l~~a~~~lg~~~----~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al 518 (550)
. ++..+|..+ ...|++++|+++++++++.+ |... .++..+|.+|...|++++|+..+++++
T Consensus 210 -~------~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~-------~~~~~lg~~~~~~~~~~~A~~~~~~al 274 (472)
T 4g1t_A 210 -Y------LKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVT-------DVLRSAAKFYRRKDEPDKAIELLKKAL 274 (472)
T ss_dssp -H------HHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCH-------HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred -H------HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHH-------HHHHHHHHHHHHcCchHHHHHHHHHHH
Confidence 2 444555544 45678899999999999997 8777 899999999999999999999999999
Q ss_pred HcCCCcHHHHHHHHhh
Q 008887 519 AHNPQYNELLEQLENN 534 (550)
Q Consensus 519 ~~~p~~~~~~~~l~~~ 534 (550)
+.+|++...+.++...
T Consensus 275 ~~~p~~~~~~~~lg~~ 290 (472)
T 4g1t_A 275 EYIPNNAYLHCQIGCC 290 (472)
T ss_dssp HHSTTCHHHHHHHHHH
T ss_pred HhCCChHHHHHHHHHH
Confidence 9999999988777543
No 155
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.11 E-value=1.6e-09 Score=91.82 Aligned_cols=110 Identities=25% Similarity=0.337 Sum_probs=99.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCC
Q 008887 404 NALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEE 483 (550)
Q Consensus 404 ~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~ 483 (550)
.+++.+|.++...|++++|++.++++++. +|.+. .+++.+|.++...|++++|++.++++++.. |.+
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~-------~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~ 68 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALEL-----DPRSA-------EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRS 68 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----CTTCH-------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTC
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHc-----CCcch-------hHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCc
Confidence 57889999999999999999999999998 77665 267789999999999999999999999987 776
Q ss_pred ccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHHHHHHHh
Q 008887 484 PKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQLEN 533 (550)
Q Consensus 484 ~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~l~~ 533 (550)
. ..+..+|.++...|++++|.+.++++++.+|++...+..+..
T Consensus 69 ~-------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~ 111 (136)
T 2fo7_A 69 A-------EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGN 111 (136)
T ss_dssp H-------HHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred h-------HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHH
Confidence 6 889999999999999999999999999999998887766654
No 156
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.11 E-value=9e-11 Score=104.22 Aligned_cols=92 Identities=15% Similarity=0.104 Sum_probs=83.4
Q ss_pred HHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHHhhhcCCCCChhhHHHHH
Q 008887 380 LSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLL----------EEAVEYLECAISKLFLAGHPTEPEAIDLLI 449 (550)
Q Consensus 380 ~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~----------~eA~~~~~~al~l~~~~~~p~~~~~~~~l~ 449 (550)
.+.+++++|++.++++++.+|+++++++++|.++...+++ ++|+..|++|+++ +|++.
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~l-----dP~~~------- 80 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI-----DPKKD------- 80 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH-----CTTCH-------
T ss_pred HHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHh-----CcCcH-------
Confidence 4556789999999999999999999999999999999876 5999999999999 88887
Q ss_pred HHHHHHHHHHHHhc-----------CHHHHHHHHHHHhcCCCCCCc
Q 008887 450 VASQWSGVACIRQE-----------KWEEGIAHLERIGNLKEPEEP 484 (550)
Q Consensus 450 ~a~~~lg~~~~~~g-----------~~~eA~~~~~~al~~~~p~~~ 484 (550)
.+++++|.+|..+| ++++|+++|++|++++ |++.
T Consensus 81 ~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~-P~~~ 125 (158)
T 1zu2_A 81 EAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQ-PDNT 125 (158)
T ss_dssp HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHC-TTCH
T ss_pred HHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhC-CCCH
Confidence 38999999999885 8999999999999998 8653
No 157
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.11 E-value=2.2e-10 Score=117.34 Aligned_cols=145 Identities=15% Similarity=0.102 Sum_probs=120.5
Q ss_pred ChHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCCh----HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChh
Q 008887 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNI----NALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPE 443 (550)
Q Consensus 368 ~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~----~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~ 443 (550)
....++..|..+...|++++|+.+|+++++.+|++. .++..+|.++...|++++|+.++++++++....++
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~----- 82 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGD----- 82 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-----
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccc-----
Confidence 455778999999999999999999999999999984 67899999999999999999999999988432211
Q ss_pred hHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCC-----------------
Q 008887 444 AIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGR----------------- 506 (550)
Q Consensus 444 ~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~----------------- 506 (550)
......++..+|.++...|++++|+++++++++.. +... +......++..+|.+|...|+
T Consensus 83 -~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-~~~~-~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a 159 (406)
T 3sf4_A 83 -QLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDIS-RELN-DKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEV 159 (406)
T ss_dssp -HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHHT-CHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHH
T ss_pred -cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-Hhcc-cccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhH
Confidence 12223478899999999999999999999999885 4322 122345689999999999999
Q ss_pred ---HHHHHHHHHHHHHc
Q 008887 507 ---NAEAEKYLRLAAAH 520 (550)
Q Consensus 507 ---~~eA~~~l~~al~~ 520 (550)
+++|...+++++++
T Consensus 160 ~~~~~~A~~~~~~al~~ 176 (406)
T 3sf4_A 160 RDALQAAVDFYEENLSL 176 (406)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999998876
No 158
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.11 E-value=2e-10 Score=113.65 Aligned_cols=144 Identities=15% Similarity=0.077 Sum_probs=118.9
Q ss_pred hHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCC----hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhh
Q 008887 369 PKELIALSVKFLSKGDKERPIPLLQLALNKEPDN----INALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEA 444 (550)
Q Consensus 369 ~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~----~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~ 444 (550)
...++..|..+...|++++|+..|+++++.+|++ ..++..+|.++...|++++|+++++++++.....++
T Consensus 5 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~------ 78 (338)
T 3ro2_A 5 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGD------ 78 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC------
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccc------
Confidence 3466789999999999999999999999999998 477889999999999999999999999988432211
Q ss_pred HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCC------------------
Q 008887 445 IDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGR------------------ 506 (550)
Q Consensus 445 ~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~------------------ 506 (550)
......++..+|.++...|++++|++.++++++.. +... +......++..+|.+|...|+
T Consensus 79 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~ 156 (338)
T 3ro2_A 79 QLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDIS-RELN-DKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVR 156 (338)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHTT-CHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHH
T ss_pred cHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH-HHhc-CchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHH
Confidence 12223478889999999999999999999999875 4332 222334688999999999999
Q ss_pred --HHHHHHHHHHHHHc
Q 008887 507 --NAEAEKYLRLAAAH 520 (550)
Q Consensus 507 --~~eA~~~l~~al~~ 520 (550)
+++|.+.+++++.+
T Consensus 157 ~~~~~A~~~~~~a~~~ 172 (338)
T 3ro2_A 157 NALQAAVDLYEENLSL 172 (338)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 99999999988765
No 159
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.11 E-value=9.2e-10 Score=102.62 Aligned_cols=110 Identities=11% Similarity=0.084 Sum_probs=96.0
Q ss_pred ChHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCCh-----
Q 008887 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEP----- 442 (550)
Q Consensus 368 ~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~----- 442 (550)
++..++.+|..+...|++++|++.|+++++.+|++..+++.+|.+|...|++++|+++|+++++. .|.+.
T Consensus 36 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~-----~~~~~~~~~~ 110 (213)
T 1hh8_A 36 HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQ-----LRGNQLIDYK 110 (213)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-----TTTCSEEECG
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcccHHHHHHHHHHHHHh-----CCCccHHHHH
Confidence 45677899999999999999999999999999999999999999999999999999999999998 66543
Q ss_pred -----hhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCc
Q 008887 443 -----EAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEP 484 (550)
Q Consensus 443 -----~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~ 484 (550)
..... ..+++++|.++...|++++|++.|+++++.. |++.
T Consensus 111 ~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~ 155 (213)
T 1hh8_A 111 ILGLQFKLFA-CEVLYNIAFMYAKKEEWKKAEEQLALATSMK-SEPR 155 (213)
T ss_dssp GGTBCCEEEH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-CSGG
T ss_pred HhccccCccc-hHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-cccc
Confidence 11111 1378899999999999999999999999997 7543
No 160
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.10 E-value=8.5e-10 Score=100.04 Aligned_cols=105 Identities=12% Similarity=0.139 Sum_probs=97.9
Q ss_pred CChHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHH-HHHcCCH--HHHHHHHHHHHHHhhhcCCCCChh
Q 008887 367 LTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQT-QLQKGLL--EEAVEYLECAISKLFLAGHPTEPE 443 (550)
Q Consensus 367 l~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~-~~~~g~~--~eA~~~~~~al~l~~~~~~p~~~~ 443 (550)
-++..++.+|..+...|++++|+..|+++++.+|++..++..+|.+ +...|++ ++|+.+++++++. +|.+.
T Consensus 42 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~-----~p~~~- 115 (177)
T 2e2e_A 42 QNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALAL-----DSNEI- 115 (177)
T ss_dssp SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHH-----CTTCH-
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHh-----CCCcH-
Confidence 4677888999999999999999999999999999999999999999 8899999 9999999999999 88776
Q ss_pred hHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCc
Q 008887 444 AIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEP 484 (550)
Q Consensus 444 ~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~ 484 (550)
.+++.+|.++...|++++|++.|+++++.. |++.
T Consensus 116 ------~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~ 149 (177)
T 2e2e_A 116 ------TALMLLASDAFMQANYAQAIELWQKVMDLN-SPRI 149 (177)
T ss_dssp ------HHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-CTTS
T ss_pred ------HHHHHHHHHHHHcccHHHHHHHHHHHHhhC-CCCc
Confidence 277889999999999999999999999998 8765
No 161
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.08 E-value=2.1e-09 Score=115.64 Aligned_cols=149 Identities=11% Similarity=0.031 Sum_probs=121.6
Q ss_pred CCChHHHHHHHHHHHH-------cCCCC-------ChHHHHHHHHh-hCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008887 366 NLTPKELIALSVKFLS-------KGDKE-------RPIPLLQLALN-KEPDNINALILMGQTQLQKGLLEEAVEYLECAI 430 (550)
Q Consensus 366 ~l~~~~l~~la~~~~~-------~g~~~-------~A~~~~~~aL~-~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al 430 (550)
..+++.++..|..+.. .|+++ +|.+.|+++++ ..|++..+|..+|.++...|++++|.+.|++++
T Consensus 269 p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al 348 (530)
T 2ooe_A 269 GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLL 348 (530)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Confidence 3467778888888876 79987 89999999997 799999999999999999999999999999999
Q ss_pred HHhhhcCCCCChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHH-HHhcCCHHH
Q 008887 431 SKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASA-LCNVGRNAE 509 (550)
Q Consensus 431 ~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~-~~~~g~~~e 509 (550)
+. +|.++. .+|..+|.++.+.|++++|++.|+++++.. |... ..+...+.+ +...|++++
T Consensus 349 ~~-----~p~~~~------~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~-------~~~~~~a~~~~~~~~~~~~ 409 (530)
T 2ooe_A 349 AI-----EDIDPT------LVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRH-------HVYVTAALMEYYCSKDKSV 409 (530)
T ss_dssp HS-----SSSCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCT-------HHHHHHHHHHHHHTCCHHH
T ss_pred Cc-----cccCch------HHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCch-------HHHHHHHHHHHHHcCChhH
Confidence 98 777652 267788888888999999999999999885 5443 455555544 446888888
Q ss_pred HHHHHHHHHHcCCCcHHHHHHHHh
Q 008887 510 AEKYLRLAAAHNPQYNELLEQLEN 533 (550)
Q Consensus 510 A~~~l~~al~~~p~~~~~~~~l~~ 533 (550)
|...|+++++.+|++...+..+..
T Consensus 410 A~~~~e~al~~~p~~~~~~~~~~~ 433 (530)
T 2ooe_A 410 AFKIFELGLKKYGDIPEYVLAYID 433 (530)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHH
Confidence 888888888888888887766554
No 162
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.06 E-value=5.3e-10 Score=103.09 Aligned_cols=136 Identities=13% Similarity=0.034 Sum_probs=103.7
Q ss_pred HHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHH
Q 008887 379 FLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVA 458 (550)
Q Consensus 379 ~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~ 458 (550)
++..|++++|.+.++......+....++..+|.++...|++++|+.++++++++....++ ......++.++|.+
T Consensus 2 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~------~~~~~~~~~~l~~~ 75 (203)
T 3gw4_A 2 AFEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGD------HTAEHRALHQVGMV 75 (203)
T ss_dssp -----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCC------HHHHHHHHHHHHHH
T ss_pred ccccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCC------cHHHHHHHHHHHHH
Confidence 456889999999666555533467899999999999999999999999999998432211 12223478899999
Q ss_pred HHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 008887 459 CIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHN 521 (550)
Q Consensus 459 ~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~ 521 (550)
+...|++++|+++++++++.. .....+......++..+|.++...|++++|..++++++++.
T Consensus 76 ~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 137 (203)
T 3gw4_A 76 ERMAGNWDAARRCFLEERELL-ASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYA 137 (203)
T ss_dssp HHHTTCHHHHHHHHHHHHHHH-HHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHH-HHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 999999999999999999883 22211222345789999999999999999999999998754
No 163
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.05 E-value=1.6e-09 Score=101.92 Aligned_cols=142 Identities=11% Similarity=0.100 Sum_probs=118.3
Q ss_pred ChHHHHHHHHHHHHcC----CCCChHHHHHHHHhhCCCChHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHhhhcCCC
Q 008887 368 TPKELIALSVKFLSKG----DKERPIPLLQLALNKEPDNINALILMGQTQLQ----KGLLEEAVEYLECAISKLFLAGHP 439 (550)
Q Consensus 368 ~~~~l~~la~~~~~~g----~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~----~g~~~eA~~~~~~al~l~~~~~~p 439 (550)
++...+.+|..|.. + ++++|+.+|+++.+ ++++.+++.+|.+|.. .+++++|+++|+++.+. ++
T Consensus 49 ~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~--~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-----~~ 120 (212)
T 3rjv_A 49 DGDALALLAQLKIR-NPQQADYPQARQLAEKAVE--AGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARD-----SE 120 (212)
T ss_dssp CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHH--TTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSS-----TT
T ss_pred CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHc-----CC
Confidence 56788899999988 6 89999999999965 5799999999999998 89999999999999887 33
Q ss_pred CChhhHHHHHHHHHHHHHHHHH----hcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhc-C-----CHHH
Q 008887 440 TEPEAIDLLIVASQWSGVACIR----QEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNV-G-----RNAE 509 (550)
Q Consensus 440 ~~~~~~~~l~~a~~~lg~~~~~----~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~-g-----~~~e 509 (550)
.+... .+++++|.+|.. .+++++|+++|+++++. +.++ .+++.||.+|... | ++++
T Consensus 121 ~~~~~-----~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--~~~~-------~a~~~Lg~~y~~g~gg~~~~d~~~ 186 (212)
T 3rjv_A 121 SDAAV-----DAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL--SRTG-------YAEYWAGMMFQQGEKGFIEPNKQK 186 (212)
T ss_dssp SHHHH-----HHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT--SCTT-------HHHHHHHHHHHHCBTTTBCCCHHH
T ss_pred CcchH-----HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc--CCCH-------HHHHHHHHHHHcCCCCCCCCCHHH
Confidence 21101 388899999999 89999999999999988 4445 7999999999864 3 8999
Q ss_pred HHHHHHHHHHcCCCcHHHHHHHHh
Q 008887 510 AEKYLRLAAAHNPQYNELLEQLEN 533 (550)
Q Consensus 510 A~~~l~~al~~~p~~~~~~~~l~~ 533 (550)
|+.+|+++.+.. +.++...+.+
T Consensus 187 A~~~~~~A~~~g--~~~A~~~l~~ 208 (212)
T 3rjv_A 187 ALHWLNVSCLEG--FDTGCEEFDR 208 (212)
T ss_dssp HHHHHHHHHHHT--CHHHHHHHHH
T ss_pred HHHHHHHHHHcC--CHHHHHHHHH
Confidence 999999999874 4555555544
No 164
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=99.04 E-value=1.4e-09 Score=91.20 Aligned_cols=84 Identities=20% Similarity=0.185 Sum_probs=78.2
Q ss_pred CChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHHhcCH
Q 008887 386 ERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKW 465 (550)
Q Consensus 386 ~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~g~~ 465 (550)
++|++.|+++++.+|+++.+++.+|.+|...|++++|+++|+++++. +|.+. .+++++|.++...|++
T Consensus 2 ~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-----~p~~~-------~~~~~la~~~~~~g~~ 69 (115)
T 2kat_A 2 QAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDF-----DPTYS-------VAWKWLGKTLQGQGDR 69 (115)
T ss_dssp CCHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCH-------HHHHHHHHHHHHHTCH
T ss_pred hHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH-----CCCcH-------HHHHHHHHHHHHcCCH
Confidence 57899999999999999999999999999999999999999999999 88776 3788999999999999
Q ss_pred HHHHHHHHHHhcCCCCC
Q 008887 466 EEGIAHLERIGNLKEPE 482 (550)
Q Consensus 466 ~eA~~~~~~al~~~~p~ 482 (550)
++|++.|+++++.. |.
T Consensus 70 ~~A~~~~~~al~~~-~~ 85 (115)
T 2kat_A 70 AGARQAWESGLAAA-QS 85 (115)
T ss_dssp HHHHHHHHHHHHHH-HH
T ss_pred HHHHHHHHHHHHhc-cc
Confidence 99999999999986 53
No 165
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.04 E-value=1.9e-09 Score=116.86 Aligned_cols=147 Identities=6% Similarity=-0.090 Sum_probs=132.9
Q ss_pred ChHHHHHHHHHHHHcCC----------CCChHHHHHHHHhhCCCChHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHhhh
Q 008887 368 TPKELIALSVKFLSKGD----------KERPIPLLQLALNKEPDNINALILMGQTQLQKG--LLEEAVEYLECAISKLFL 435 (550)
Q Consensus 368 ~~~~l~~la~~~~~~g~----------~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g--~~~eA~~~~~~al~l~~~ 435 (550)
...++...+..+...|+ ++++++.++++++.+|++..+|+.++.++.+.+ ++++++++++++++.
T Consensus 62 ~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~--- 138 (567)
T 1dce_A 62 FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEA--- 138 (567)
T ss_dssp CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHH---
T ss_pred hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhh---
Confidence 45566677777777777 899999999999999999999999999999999 789999999999999
Q ss_pred cCCCCChhhHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhc----------
Q 008887 436 AGHPTEPEAIDLLIVASQWSGVACIRQE-KWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNV---------- 504 (550)
Q Consensus 436 ~~~p~~~~~~~~l~~a~~~lg~~~~~~g-~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~---------- 504 (550)
+|.+. . +|++.+.++...| .+++++++++++++.+ |.+. .+|..++.++...
T Consensus 139 --d~~N~-~------aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n~-------saW~~r~~ll~~l~~~~~~~~~~ 201 (567)
T 1dce_A 139 --DERNF-H------CWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNY-------SSWHYRSCLLPQLHPQPDSGPQG 201 (567)
T ss_dssp --CTTCH-H------HHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCH-------HHHHHHHHHHHHHSCCCCSSSCC
T ss_pred --ccccc-c------HHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCCc-------cHHHHHHHHHHhhcccccccccc
Confidence 88876 3 8999999999999 9999999999999998 8887 9999999998875
Q ss_pred ----CCHHHHHHHHHHHHHcCCCcHHHHHHHHhh
Q 008887 505 ----GRNAEAEKYLRLAAAHNPQYNELLEQLENN 534 (550)
Q Consensus 505 ----g~~~eA~~~l~~al~~~p~~~~~~~~l~~~ 534 (550)
+++++|++++.+++.++|++..+|..+.-.
T Consensus 202 ~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~l 235 (567)
T 1dce_A 202 RLPENVLLKELELVQNAFFTDPNDQSAWFYHRWL 235 (567)
T ss_dssp SSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHH
Confidence 568999999999999999999999877653
No 166
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.02 E-value=8.3e-09 Score=102.72 Aligned_cols=144 Identities=8% Similarity=0.006 Sum_probs=128.7
Q ss_pred HHHHHHHHHHHcCCCC-ChHHHHHHHHhhCCCChHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHhhhcCCCCChhhHHH
Q 008887 371 ELIALSVKFLSKGDKE-RPIPLLQLALNKEPDNINALILMGQTQLQKG--LLEEAVEYLECAISKLFLAGHPTEPEAIDL 447 (550)
Q Consensus 371 ~l~~la~~~~~~g~~~-~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g--~~~eA~~~~~~al~l~~~~~~p~~~~~~~~ 447 (550)
++.......+..|++. +|+++++++|..+|++..+|+..+.++...| +++++++++++++.. +|.+.
T Consensus 34 ~~~~~~~a~~~~~e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~-----nPk~y----- 103 (306)
T 3dra_A 34 QIMGLLLALMKAEEYSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALD-----NEKNY----- 103 (306)
T ss_dssp HHHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHH-----CTTCC-----
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHH-----CcccH-----
Confidence 4445666667788775 7999999999999999999999999999999 999999999999999 88887
Q ss_pred HHHHHHHHHHHH----HHh---cCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHH--HHHHHHHHHH
Q 008887 448 LIVASQWSGVAC----IRQ---EKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNA--EAEKYLRLAA 518 (550)
Q Consensus 448 l~~a~~~lg~~~----~~~---g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~--eA~~~l~~al 518 (550)
.+|+..+.++ ... ++++++++.++++++.+ |++. .+|...+.++...|+++ ++.+++++++
T Consensus 104 --~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~-pkny-------~aW~~R~~vl~~l~~~~~~~EL~~~~~~i 173 (306)
T 3dra_A 104 --QIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSD-PKNH-------HVWSYRKWLVDTFDLHNDAKELSFVDKVI 173 (306)
T ss_dssp --HHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHC-TTCH-------HHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhC-CCCH-------HHHHHHHHHHHHhcccChHHHHHHHHHHH
Confidence 3888899888 666 79999999999999998 8877 99999999999999998 9999999999
Q ss_pred HcCCCcHHHHHHHHhh
Q 008887 519 AHNPQYNELLEQLENN 534 (550)
Q Consensus 519 ~~~p~~~~~~~~l~~~ 534 (550)
+.+|.+..+|.....+
T Consensus 174 ~~d~~N~sAW~~R~~l 189 (306)
T 3dra_A 174 DTDLKNNSAWSHRFFL 189 (306)
T ss_dssp HHCTTCHHHHHHHHHH
T ss_pred HhCCCCHHHHHHHHHH
Confidence 9999999988765543
No 167
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.02 E-value=6.3e-09 Score=103.61 Aligned_cols=150 Identities=9% Similarity=-0.051 Sum_probs=135.6
Q ss_pred ChHHHHHHHHHHHHcC--CCCChHHHHHHHHhhCCCChHHHHHHHHHH----HHc---CCHHHHHHHHHHHHHHhhhcCC
Q 008887 368 TPKELIALSVKFLSKG--DKERPIPLLQLALNKEPDNINALILMGQTQ----LQK---GLLEEAVEYLECAISKLFLAGH 438 (550)
Q Consensus 368 ~~~~l~~la~~~~~~g--~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~----~~~---g~~~eA~~~~~~al~l~~~~~~ 438 (550)
........+..+...| +++++++.+++++..+|++..+|+..+.++ ... +++++++++++++++. +
T Consensus 66 ~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~-----~ 140 (306)
T 3dra_A 66 HYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSS-----D 140 (306)
T ss_dssp CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHH-----C
T ss_pred HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHh-----C
Confidence 4445567888888888 999999999999999999999999999999 777 8999999999999999 8
Q ss_pred CCChhhHHHHHHHHHHHHHHHHHhcCHH--HHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCC------HHHH
Q 008887 439 PTEPEAIDLLIVASQWSGVACIRQEKWE--EGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGR------NAEA 510 (550)
Q Consensus 439 p~~~~~~~~l~~a~~~lg~~~~~~g~~~--eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~------~~eA 510 (550)
|.+. . +|++.+.++...|+++ ++++.++++++.+ |.+- .+|...+.++...|+ ++++
T Consensus 141 pkny-~------aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~-------sAW~~R~~ll~~l~~~~~~~~~~eE 205 (306)
T 3dra_A 141 PKNH-H------VWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNN-------SAWSHRFFLLFSKKHLATDNTIDEE 205 (306)
T ss_dssp TTCH-H------HHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCH-------HHHHHHHHHHHSSGGGCCHHHHHHH
T ss_pred CCCH-H------HHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCH-------HHHHHHHHHHHhccccchhhhHHHH
Confidence 8887 4 8999999999999999 9999999999998 8777 999999999999988 9999
Q ss_pred HHHHHHHHHcCCCcHHHHHHHHhhHHH
Q 008887 511 EKYLRLAAAHNPQYNELLEQLENNDEE 537 (550)
Q Consensus 511 ~~~l~~al~~~p~~~~~~~~l~~~~~~ 537 (550)
++++++++..+|++..+|..+......
T Consensus 206 l~~~~~aI~~~p~n~SaW~y~~~ll~~ 232 (306)
T 3dra_A 206 LNYVKDKIVKCPQNPSTWNYLLGIHER 232 (306)
T ss_dssp HHHHHHHHHHCSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCccHHHHHHHHHHh
Confidence 999999999999999999877665444
No 168
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=99.01 E-value=1.8e-10 Score=95.33 Aligned_cols=102 Identities=7% Similarity=0.030 Sum_probs=88.9
Q ss_pred ChHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHH
Q 008887 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDL 447 (550)
Q Consensus 368 ~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~ 447 (550)
+++.+..+|..++..|++++|++.|+++++.+|+++.+++++|.++...|++++|++++++++++ +|.+... ..
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~-~~ 76 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY-----TSTAEHV-AI 76 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS-----CSSTTSH-HH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-----CCCccHH-HH
Confidence 35677899999999999999999999999999999999999999999999999999999999999 8887422 22
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 008887 448 LIVASQWSGVACIRQEKWEEGIAHLERI 475 (550)
Q Consensus 448 l~~a~~~lg~~~~~~g~~~eA~~~~~~a 475 (550)
...+++.+|.++...|++++|++.+++.
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 104 (111)
T 2l6j_A 77 RSKLQYRLELAQGAVGSVQIPVVEVDEL 104 (111)
T ss_dssp HHHHHHHHHHHHHHHHCCCCCSSSSSSC
T ss_pred HHHHHHHHHHHHHHHHhHhhhHhHHHHh
Confidence 3347888999999999988888776653
No 169
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.00 E-value=3e-10 Score=120.82 Aligned_cols=112 Identities=14% Similarity=0.153 Sum_probs=101.9
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCC
Q 008887 403 INALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPE 482 (550)
Q Consensus 403 ~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~ 482 (550)
+.+++.+|.++...|++++|+++|+++++. +|.+. .+++++|.++.++|++++|+++++++++.+ |+
T Consensus 6 a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~-----~p~~~-------~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~ 72 (477)
T 1wao_1 6 AEELKTQANDYFKAKDYENAIKFYSQAIEL-----NPSNA-------IYYGNRSLAYLRTECYGYALGDATRAIELD-KK 72 (477)
T ss_dssp HTTSSSSSSSTTTTTCHHHHHHHHHHHHHH-----CTTCH-------HHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TT
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHh-----CCccH-------HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CC
Confidence 455677889999999999999999999999 88776 388899999999999999999999999998 88
Q ss_pred CccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHHHHHHHhh
Q 008887 483 EPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQLENN 534 (550)
Q Consensus 483 ~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~l~~~ 534 (550)
+. .+++++|.+|.++|++++|++.|+++++++|++..++..+..+
T Consensus 73 ~~-------~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~ 117 (477)
T 1wao_1 73 YI-------KGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQEC 117 (477)
T ss_dssp CH-------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHH
T ss_pred CH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 77 9999999999999999999999999999999998877776553
No 170
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.00 E-value=3.7e-09 Score=107.78 Aligned_cols=144 Identities=15% Similarity=0.067 Sum_probs=117.0
Q ss_pred HHHHHHHHHHHcCCCCChHHHHHHHHhhCCCC------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhh
Q 008887 371 ELIALSVKFLSKGDKERPIPLLQLALNKEPDN------INALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEA 444 (550)
Q Consensus 371 ~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~------~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~ 444 (550)
.+..+|..+...|++++|+..++++++..+.. ..++..+|.++...|++++|+++++++++.....+++..+..
T Consensus 55 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~ 134 (373)
T 1hz4_A 55 ATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMH 134 (373)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHH
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHH
Confidence 45588999999999999999999999865432 244788999999999999999999999998544334332311
Q ss_pred HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 008887 445 IDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHN 521 (550)
Q Consensus 445 ~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~ 521 (550)
..++.++|.++...|++++|.++++++++.. +..... ....++..+|.++...|++++|...+++++++.
T Consensus 135 ----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-~~~~~~--~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~ 204 (373)
T 1hz4_A 135 ----EFLVRIRAQLLWAWARLDEAEASARSGIEVL-SSYQPQ--QQLQCLAMLIQCSLARGDLDNARSQLNRLENLL 204 (373)
T ss_dssp ----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTSCGG--GGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh-hccCcH--HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 1366789999999999999999999999986 543211 244788999999999999999999999998763
No 171
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.00 E-value=3e-09 Score=108.43 Aligned_cols=146 Identities=15% Similarity=0.024 Sum_probs=117.1
Q ss_pred HHHHHHHHHHHcCCCCChHHHHHHHHhhCCCCh-----HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhH
Q 008887 371 ELIALSVKFLSKGDKERPIPLLQLALNKEPDNI-----NALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAI 445 (550)
Q Consensus 371 ~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~-----~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~ 445 (550)
.....|..+...|++++|+..++++++..|.+. .++..+|.++...|++++|.+++++++++.. ... ..
T Consensus 16 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-----~~~-~~ 89 (373)
T 1hz4_A 16 FNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMAR-----QHD-VW 89 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH-----HTT-CH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH-----hcC-cH
Confidence 445788899999999999999999999877553 2678999999999999999999999999842 222 11
Q ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccc-cccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 008887 446 DLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKS-KAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQ 523 (550)
Q Consensus 446 ~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~-~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~ 523 (550)
.....++.++|.++..+|++++|+++++++++.. +..... ......++..+|.++...|++++|..+++++++..+.
T Consensus 90 ~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 167 (373)
T 1hz4_A 90 HYALWSLIQQSEILFAQGFLQTAWETQEKAFQLI-NEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSS 167 (373)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH-HHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhc
Confidence 1222367889999999999999999999999875 322111 1234467889999999999999999999999998765
No 172
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.97 E-value=3.8e-10 Score=93.39 Aligned_cols=101 Identities=18% Similarity=0.144 Sum_probs=85.6
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCC
Q 008887 402 NINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEP 481 (550)
Q Consensus 402 ~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p 481 (550)
++.+++.+|.++...|++++|+++|+++++. +|.++ .+++++|.++...|++++|++.|+++++.+ |
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~-----~p~~~-------~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p 69 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITA-----QPQNP-------VGYSNKAMALIKLGEYTQAIQMCQQGLRYT-S 69 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH-----CTTCH-------HHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-S
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCCH-------HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-C
Confidence 4678999999999999999999999999999 88876 378899999999999999999999999998 8
Q ss_pred CCccccccchhHHHHHHHHHHhcCCHHHHHHHHHH
Q 008887 482 EEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRL 516 (550)
Q Consensus 482 ~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~ 516 (550)
++... .....+++.+|.++...|++++|++.+++
T Consensus 70 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 70 TAEHV-AIRSKLQYRLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp STTSH-HHHHHHHHHHHHHHHHHHCCCCCSSSSSS
T ss_pred CccHH-HHHHHHHHHHHHHHHHHHhHhhhHhHHHH
Confidence 76211 11237899999999999988887765543
No 173
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.96 E-value=1e-08 Score=111.22 Aligned_cols=144 Identities=10% Similarity=0.020 Sum_probs=129.3
Q ss_pred HHHHHHHHcCCCC-ChHHHHHHHHhhCCCChHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHHhhhcCCCCCh
Q 008887 374 ALSVKFLSKGDKE-RPIPLLQLALNKEPDNINALILMGQTQLQKGL----------LEEAVEYLECAISKLFLAGHPTEP 442 (550)
Q Consensus 374 ~la~~~~~~g~~~-~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~----------~~eA~~~~~~al~l~~~~~~p~~~ 442 (550)
.........|+++ +|++.++++++.+|++..+|+.++.++...|+ ++++++.++++++. +|.+.
T Consensus 33 ~~~~~~~~~~~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~-----~pK~y 107 (567)
T 1dce_A 33 QAVFQKRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV-----NPKSY 107 (567)
T ss_dssp HHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH-----CTTCH
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh-----CCCCH
Confidence 4444566777766 57999999999999999999999999999998 99999999999999 88877
Q ss_pred hhHHHHHHHHHHHHHHHHHhc--CHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcC-CHHHHHHHHHHHHH
Q 008887 443 EAIDLLIVASQWSGVACIRQE--KWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVG-RNAEAEKYLRLAAA 519 (550)
Q Consensus 443 ~~~~~l~~a~~~lg~~~~~~g--~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g-~~~eA~~~l~~al~ 519 (550)
. +|++.+.++.+.| +++++++.++++++.+ |++. .+|...+.++...| +++++.++++++++
T Consensus 108 -~------aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d-~~N~-------~aW~~R~~~l~~l~~~~~~el~~~~~~I~ 172 (567)
T 1dce_A 108 -G------TWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNF-------HCWDYRRFVAAQAAVAPAEELAFTDSLIT 172 (567)
T ss_dssp -H------HHHHHHHHHHTCSSCCHHHHHHHHHHHHHHC-TTCH-------HHHHHHHHHHHHTCCCHHHHHHHHHTTTT
T ss_pred -H------HHHHHHHHHHHcccccHHHHHHHHHHHHhhc-cccc-------cHHHHHHHHHHHcCCChHHHHHHHHHHHH
Confidence 3 9999999999999 7799999999999998 8777 99999999999999 99999999999999
Q ss_pred cCCCcHHHHHHHHhhHHH
Q 008887 520 HNPQYNELLEQLENNDEE 537 (550)
Q Consensus 520 ~~p~~~~~~~~l~~~~~~ 537 (550)
.+|++..+|.....+...
T Consensus 173 ~~p~n~saW~~r~~ll~~ 190 (567)
T 1dce_A 173 RNFSNYSSWHYRSCLLPQ 190 (567)
T ss_dssp TTCCCHHHHHHHHHHHHH
T ss_pred HCCCCccHHHHHHHHHHh
Confidence 999999999887665443
No 174
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=98.94 E-value=7.3e-09 Score=111.34 Aligned_cols=138 Identities=8% Similarity=-0.075 Sum_probs=119.1
Q ss_pred ChHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCCh-HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHH
Q 008887 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNI-NALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAID 446 (550)
Q Consensus 368 ~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~-~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~ 446 (550)
++.....+|..+...|++++|.+.|+++++.+|+++ .+|..+|.++.+.|++++|++.|+++++. .|... .
T Consensus 320 ~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~-----~~~~~-~-- 391 (530)
T 2ooe_A 320 NMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED-----ARTRH-H-- 391 (530)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-----TTCCT-H--
T ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc-----cCCch-H--
Confidence 566777999999999999999999999999999986 69999999999999999999999999987 55543 1
Q ss_pred HHHHHHHHHHHH-HHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcH
Q 008887 447 LLIVASQWSGVA-CIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYN 525 (550)
Q Consensus 447 ~l~~a~~~lg~~-~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~ 525 (550)
.+...+.. +...|++++|.+.|+++++.. |+++ .+|..++..+.+.|+.++|+..|++++..+|.++
T Consensus 392 ----~~~~~a~~~~~~~~~~~~A~~~~e~al~~~-p~~~-------~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~ 459 (530)
T 2ooe_A 392 ----VYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIP-------EYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPP 459 (530)
T ss_dssp ----HHHHHHHHHHHHTCCHHHHHHHHHHHHHHH-TTCH-------HHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCG
T ss_pred ----HHHHHHHHHHHHcCChhHHHHHHHHHHHHC-CCCH-------HHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCH
Confidence 22233333 446899999999999999998 8887 9999999999999999999999999999876554
No 175
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=98.90 E-value=1.9e-08 Score=106.99 Aligned_cols=141 Identities=13% Similarity=0.107 Sum_probs=121.4
Q ss_pred ChHHHHHHHHHHHHc-----CCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHhhhcCCC
Q 008887 368 TPKELIALSVKFLSK-----GDKERPIPLLQLALNKEPDNINALILMGQTQLQKG---LLEEAVEYLECAISKLFLAGHP 439 (550)
Q Consensus 368 ~~~~l~~la~~~~~~-----g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g---~~~eA~~~~~~al~l~~~~~~p 439 (550)
+++..+.+|..+... +++++|+.+|+++.+. ++..+++.+|.+|...| ++++|+++|+++++.
T Consensus 290 ~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~------- 360 (490)
T 2xm6_A 290 NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ--GDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK------- 360 (490)
T ss_dssp CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT-------
T ss_pred CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC-------
Confidence 667788999999988 8999999999999876 57789999999999866 899999999999877
Q ss_pred CChhhHHHHHHHHHHHHHHHHH----hcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHh----cCCHHHHH
Q 008887 440 TEPEAIDLLIVASQWSGVACIR----QEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCN----VGRNAEAE 511 (550)
Q Consensus 440 ~~~~~~~~l~~a~~~lg~~~~~----~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~----~g~~~eA~ 511 (550)
.++ .+++++|.+|.. .+++++|+++|+++++.. ++ .+++.+|.+|.. .+++++|.
T Consensus 361 ~~~-------~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~-------~a~~~Lg~~y~~g~g~~~d~~~A~ 423 (490)
T 2xm6_A 361 GEK-------AAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LS-------AAQVQLGEIYYYGLGVERDYVQAW 423 (490)
T ss_dssp TCH-------HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CH-------HHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred CCH-------HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CH-------HHHHHHHHHHHcCCCCCCCHHHHH
Confidence 122 388899999999 899999999999999874 23 899999999998 89999999
Q ss_pred HHHHHHHHcCCC---cHHHHHHHHhh
Q 008887 512 KYLRLAAAHNPQ---YNELLEQLENN 534 (550)
Q Consensus 512 ~~l~~al~~~p~---~~~~~~~l~~~ 534 (550)
.+|+++++.+|+ +..+...+...
T Consensus 424 ~~~~~A~~~~~~~~~~~~a~~~l~~~ 449 (490)
T 2xm6_A 424 AWFDTASTNDMNLFGTENRNITEKKL 449 (490)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTTS
T ss_pred HHHHHHHHCCCCCcCCHHHHHHHHhc
Confidence 999999999954 77777766554
No 176
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.90 E-value=5.8e-08 Score=97.36 Aligned_cols=145 Identities=10% Similarity=0.022 Sum_probs=128.8
Q ss_pred HHHHHHHHcCCCC-ChHHHHHHHHhhCCCChHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHHhhhcCCCCCh
Q 008887 374 ALSVKFLSKGDKE-RPIPLLQLALNKEPDNINALILMGQTQLQKGL----------LEEAVEYLECAISKLFLAGHPTEP 442 (550)
Q Consensus 374 ~la~~~~~~g~~~-~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~----------~~eA~~~~~~al~l~~~~~~p~~~ 442 (550)
+........|+++ +|++++.+++..+|++..+|+..+.++...++ ++++++++++++.. +|.+.
T Consensus 34 ~~~~~~~~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~-----~PKny 108 (331)
T 3dss_A 34 QAVFQKRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV-----NPKSY 108 (331)
T ss_dssp HHHHHHHHTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH-----CTTCH
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHh-----CCCCH
Confidence 4455667788888 69999999999999999999999999988776 78999999999999 88887
Q ss_pred hhHHHHHHHHHHHHHHHHHhcC--HHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCC-HHHHHHHHHHHHH
Q 008887 443 EAIDLLIVASQWSGVACIRQEK--WEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGR-NAEAEKYLRLAAA 519 (550)
Q Consensus 443 ~~~~~l~~a~~~lg~~~~~~g~--~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~-~~eA~~~l~~al~ 519 (550)
. +|++.+.++...|+ +++++++++++++.+ |.+- .+|...+.++...|+ ++++++++.++++
T Consensus 109 -~------aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy-------~AW~~R~~vl~~l~~~~~eel~~~~~~I~ 173 (331)
T 3dss_A 109 -G------TWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNF-------HCWDYRRFVAAQAAVAPAEELAFTDSLIT 173 (331)
T ss_dssp -H------HHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCH-------HHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred -H------HHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCH-------HHHHHHHHHHHHhCcCHHHHHHHHHHHHH
Confidence 3 89999999999994 899999999999998 8777 999999999999999 6999999999999
Q ss_pred cCCCcHHHHHHHHhhHHHH
Q 008887 520 HNPQYNELLEQLENNDEEF 538 (550)
Q Consensus 520 ~~p~~~~~~~~l~~~~~~~ 538 (550)
.+|.+..+|.....+....
T Consensus 174 ~~p~N~SAW~~R~~ll~~l 192 (331)
T 3dss_A 174 RNFSNYSSWHYRSCLLPQL 192 (331)
T ss_dssp HCSCCHHHHHHHHHHHHHH
T ss_pred HCCCCHHHHHHHHHHHHHh
Confidence 9999999998776654443
No 177
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.89 E-value=8.6e-09 Score=86.33 Aligned_cols=97 Identities=15% Similarity=0.162 Sum_probs=82.6
Q ss_pred HHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHH
Q 008887 421 EAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASA 500 (550)
Q Consensus 421 eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~ 500 (550)
+|++.|+++++. +|.++ . +++++|.++...|++++|++.|+++++.+ |++. .+++.+|.+
T Consensus 3 ~a~~~~~~al~~-----~p~~~-~------~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~-------~~~~~la~~ 62 (115)
T 2kat_A 3 AITERLEAMLAQ-----GTDNM-L------LRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYS-------VAWKWLGKT 62 (115)
T ss_dssp CHHHHHHHHHTT-----TCCCH-H------HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCH-------HHHHHHHHH
T ss_pred HHHHHHHHHHHh-----CCCcH-H------HHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcH-------HHHHHHHHH
Confidence 578899999999 88876 3 78899999999999999999999999998 8777 899999999
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCc--HHHHHHHHhhHHH
Q 008887 501 LCNVGRNAEAEKYLRLAAAHNPQY--NELLEQLENNDEE 537 (550)
Q Consensus 501 ~~~~g~~~eA~~~l~~al~~~p~~--~~~~~~l~~~~~~ 537 (550)
|...|++++|+..|+++++++|+. ......+.....+
T Consensus 63 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~l~~~l~~ 101 (115)
T 2kat_A 63 LQGQGDRAGARQAWESGLAAAQSRGDQQVVKELQVFLRR 101 (115)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhccccccHHHHHHHHHHHHH
Confidence 999999999999999999998753 3444445443333
No 178
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=98.88 E-value=4.3e-08 Score=104.16 Aligned_cols=63 Identities=16% Similarity=0.208 Sum_probs=30.4
Q ss_pred ChHHHHHHHHHHHH----cCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHH----cCCHHHHHHHHHHHHHH
Q 008887 368 TPKELIALSVKFLS----KGDKERPIPLLQLALNKEPDNINALILMGQTQLQ----KGLLEEAVEYLECAISK 432 (550)
Q Consensus 368 ~~~~l~~la~~~~~----~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~----~g~~~eA~~~~~~al~l 432 (550)
+++..+.+|..|.. .+++++|+.+|+++.+. +++.+++.+|.+|.. .+++++|+++|+++.+.
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~ 108 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ--GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK 108 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC
Confidence 33444445544444 44455555555555443 344455555555554 45555555555554433
No 179
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.88 E-value=1.9e-08 Score=101.42 Aligned_cols=149 Identities=7% Similarity=-0.096 Sum_probs=122.2
Q ss_pred HHHHHHHHHHHHcC-CCCChHHHHHHHHhhCCCChHHHHHHHHHHHHc-C-CHHHHHHHHHHHHHHhhhcCCCCChhhHH
Q 008887 370 KELIALSVKFLSKG-DKERPIPLLQLALNKEPDNINALILMGQTQLQK-G-LLEEAVEYLECAISKLFLAGHPTEPEAID 446 (550)
Q Consensus 370 ~~l~~la~~~~~~g-~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~-g-~~~eA~~~~~~al~l~~~~~~p~~~~~~~ 446 (550)
......+......| +++++++.+++++..+|++..+|+.++.++... + ++++++++++++++. +|.+. .
T Consensus 89 taWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~-----dpkNy-~-- 160 (349)
T 3q7a_A 89 TVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLP-----DPKNY-H-- 160 (349)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSS-----CTTCH-H--
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHh-----CCCCH-H--
Confidence 34445666666666 477888888888888888888888888888777 6 777888888888777 77665 3
Q ss_pred HHHHHHHHHHHHHHHhcCHH--------HHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCC-------HHHHH
Q 008887 447 LLIVASQWSGVACIRQEKWE--------EGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGR-------NAEAE 511 (550)
Q Consensus 447 ~l~~a~~~lg~~~~~~g~~~--------eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~-------~~eA~ 511 (550)
+|++.+.++...|.++ +++++++++++.+ |.+- .+|...+.++...++ +++++
T Consensus 161 ----AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~-------SAW~~R~~lL~~l~~~~~~~~~~~eEL 228 (349)
T 3q7a_A 161 ----TWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNN-------SAWGWRWYLRVSRPGAETSSRSLQDEL 228 (349)
T ss_dssp ----HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCH-------HHHHHHHHHHTTSTTCCCCHHHHHHHH
T ss_pred ----HHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCH-------HHHHHHHHHHHhccccccchHHHHHHH
Confidence 8888888888888888 9999999999998 8777 999999999999987 79999
Q ss_pred HHHHHHHHcCCCcHHHHHHHHhhHHHH
Q 008887 512 KYLRLAAAHNPQYNELLEQLENNDEEF 538 (550)
Q Consensus 512 ~~l~~al~~~p~~~~~~~~l~~~~~~~ 538 (550)
+++++++..+|++..+|..+.......
T Consensus 229 e~~~~aI~~~P~n~SaW~Ylr~Ll~~~ 255 (349)
T 3q7a_A 229 IYILKSIHLIPHNVSAWNYLRGFLKHF 255 (349)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHhc
Confidence 999999999999999998876655444
No 180
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.87 E-value=1.1e-08 Score=81.05 Aligned_cols=84 Identities=24% Similarity=0.330 Sum_probs=51.3
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCC
Q 008887 402 NINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEP 481 (550)
Q Consensus 402 ~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p 481 (550)
+..+++.+|.++...|++++|+++|+++++. +|.+. .+++++|.++...|++++|+++++++++.+ |
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~-----~~~~~-------~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p 74 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALEL-----DPNNA-------EAWYNLGNAYYKQGDYDEAIEYYQKALELD-P 74 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCH-------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhc-----CCCCH-------HHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-C
Confidence 3455666666666666666666666666666 55444 145556666666666666666666666665 5
Q ss_pred CCccccccchhHHHHHHHHHHhcC
Q 008887 482 EEPKSKAHYYDGLVVLASALCNVG 505 (550)
Q Consensus 482 ~~~~~~~~~~~~~~~La~~~~~~g 505 (550)
++. .++..+|.++...|
T Consensus 75 ~~~-------~~~~~l~~~~~~~g 91 (91)
T 1na3_A 75 NNA-------EAKQNLGNAKQKQG 91 (91)
T ss_dssp TCH-------HHHHHHHHHHHHHC
T ss_pred CCH-------HHHHHHHHHHHhcC
Confidence 555 56666666665443
No 181
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.86 E-value=4e-08 Score=99.05 Aligned_cols=141 Identities=9% Similarity=-0.043 Sum_probs=125.2
Q ss_pred HHHHHHHHcCCC-CChHHHHHHHHhhCCCChHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHH
Q 008887 374 ALSVKFLSKGDK-ERPIPLLQLALNKEPDNINALILMGQTQLQKG-LLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVA 451 (550)
Q Consensus 374 ~la~~~~~~g~~-~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g-~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a 451 (550)
..-...+..+.+ ++|+++++++|..+|++..+|+.++.++...| +++++++.+++++.. +|.+. . +
T Consensus 58 ~~~r~~~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~-----nPKny-~------a 125 (349)
T 3q7a_A 58 DYFRAIAAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQ-----NLKSY-Q------V 125 (349)
T ss_dssp HHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHT-----TCCCH-H------H
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh-----CCCcH-H------H
Confidence 333444555555 57999999999999999999999999999999 599999999999999 88887 3 8
Q ss_pred HHHHHHHHHHh-c-CHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHH--------HHHHHHHHHHHcC
Q 008887 452 SQWSGVACIRQ-E-KWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNA--------EAEKYLRLAAAHN 521 (550)
Q Consensus 452 ~~~lg~~~~~~-g-~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~--------eA~~~l~~al~~~ 521 (550)
|+..+.++... + +++++++.++++++.+ |++. .+|...+.++...|+++ +++++++++++.+
T Consensus 126 W~hR~wlL~~l~~~~~~~EL~~~~k~L~~d-pkNy-------~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d 197 (349)
T 3q7a_A 126 WHHRLLLLDRISPQDPVSEIEYIHGSLLPD-PKNY-------HTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD 197 (349)
T ss_dssp HHHHHHHHHHHCCSCCHHHHHHHHHHTSSC-TTCH-------HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHHhC-CCCH-------HHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC
Confidence 99999999988 8 9999999999999998 8777 99999999999999888 9999999999999
Q ss_pred CCcHHHHHHHHhh
Q 008887 522 PQYNELLEQLENN 534 (550)
Q Consensus 522 p~~~~~~~~l~~~ 534 (550)
|.+..+|.....+
T Consensus 198 p~N~SAW~~R~~l 210 (349)
T 3q7a_A 198 GRNNSAWGWRWYL 210 (349)
T ss_dssp TTCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 9999998876554
No 182
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.84 E-value=5.1e-08 Score=97.75 Aligned_cols=128 Identities=7% Similarity=-0.048 Sum_probs=117.6
Q ss_pred CCChHHHHHHHHhhCCCChHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHHh
Q 008887 385 KERPIPLLQLALNKEPDNINALILMGQTQLQKG--LLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQ 462 (550)
Q Consensus 385 ~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g--~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~ 462 (550)
+++++.++++++..+|++..+|+..+.++...+ ++++++++++++++. +|.+. . +|++.+.++...
T Consensus 90 l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~-----dprNy-~------AW~~R~~vl~~l 157 (331)
T 3dss_A 90 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEA-----DERNF-H------CWDYRRFVAAQA 157 (331)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHH-----CTTCH-H------HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHh-----CCCCH-H------HHHHHHHHHHHh
Confidence 678999999999999999999999999999999 499999999999999 88887 3 899999999999
Q ss_pred cC-HHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhc--------------CCHHHHHHHHHHHHHcCCCcHHH
Q 008887 463 EK-WEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNV--------------GRNAEAEKYLRLAAAHNPQYNEL 527 (550)
Q Consensus 463 g~-~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~--------------g~~~eA~~~l~~al~~~p~~~~~ 527 (550)
|. +++++++++++++.+ |.+. .+|..++.++... +.++++++++.+++..+|++..+
T Consensus 158 ~~~~~eel~~~~~~I~~~-p~N~-------SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~Sa 229 (331)
T 3dss_A 158 AVAPAEELAFTDSLITRN-FSNY-------SSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSA 229 (331)
T ss_dssp TCCHHHHHHHHHHHHHHC-SCCH-------HHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHH
T ss_pred CcCHHHHHHHHHHHHHHC-CCCH-------HHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHH
Confidence 99 699999999999998 8887 9999999998877 56899999999999999999998
Q ss_pred HHHHH
Q 008887 528 LEQLE 532 (550)
Q Consensus 528 ~~~l~ 532 (550)
|..+.
T Consensus 230 W~Y~r 234 (331)
T 3dss_A 230 WFYHR 234 (331)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87443
No 183
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.82 E-value=3e-08 Score=78.52 Aligned_cols=83 Identities=28% Similarity=0.405 Sum_probs=75.5
Q ss_pred hHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHH
Q 008887 369 PKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLL 448 (550)
Q Consensus 369 ~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l 448 (550)
+..++.+|..+...|++++|+..|+++++.+|++..+++.+|.++...|++++|+++++++++. +|.+. .
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-----~p~~~-~---- 78 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL-----DPNNA-E---- 78 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCH-H----
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-----CCCCH-H----
Confidence 4566799999999999999999999999999999999999999999999999999999999999 88776 2
Q ss_pred HHHHHHHHHHHHHhc
Q 008887 449 IVASQWSGVACIRQE 463 (550)
Q Consensus 449 ~~a~~~lg~~~~~~g 463 (550)
++.++|.++...|
T Consensus 79 --~~~~l~~~~~~~g 91 (91)
T 1na3_A 79 --AKQNLGNAKQKQG 91 (91)
T ss_dssp --HHHHHHHHHHHHC
T ss_pred --HHHHHHHHHHhcC
Confidence 6778898887664
No 184
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=98.81 E-value=9.3e-09 Score=107.52 Aligned_cols=130 Identities=15% Similarity=0.113 Sum_probs=107.7
Q ss_pred HHHHHHHHHHHcCCCCChHHHHHHHHhh-----CCCC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCCh
Q 008887 371 ELIALSVKFLSKGDKERPIPLLQLALNK-----EPDN---INALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEP 442 (550)
Q Consensus 371 ~l~~la~~~~~~g~~~~A~~~~~~aL~~-----~p~~---~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~ 442 (550)
.+.+....+..+|++++|++.++++|+. .|++ ...+.++|.+|..+|+|++|+.+++++++.....-.+.+|
T Consensus 289 ~ll~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp 368 (429)
T 3qwp_A 289 ESLKKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHP 368 (429)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCH
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCCh
Confidence 4445566788899999999999999984 3444 5678899999999999999999999999998777778887
Q ss_pred hhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhc
Q 008887 443 EAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNV 504 (550)
Q Consensus 443 ~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~ 504 (550)
... ..++++|.+|..+|++++|+.++++|+++.....+.+|+...+++.+|+.+..++
T Consensus 369 ~~a----~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~ 426 (429)
T 3qwp_A 369 VRG----VQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECDANI 426 (429)
T ss_dssp HHH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHH
T ss_pred HHH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHH
Confidence 443 4778999999999999999999999998764555667777778888888887654
No 185
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.80 E-value=2.5e-08 Score=87.03 Aligned_cols=119 Identities=13% Similarity=0.095 Sum_probs=99.8
Q ss_pred CCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHH-
Q 008887 383 GDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIR- 461 (550)
Q Consensus 383 g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~- 461 (550)
+++++|+++|+++.+... +.+. +|.+|...+..++|+++|+++.+.. ++ .+.+++|.+|..
T Consensus 9 ~d~~~A~~~~~~aa~~g~--~~a~--lg~~y~~g~~~~~A~~~~~~Aa~~g-------~~-------~a~~~Lg~~y~~G 70 (138)
T 1klx_A 9 KDLKKAIQYYVKACELNE--MFGC--LSLVSNSQINKQKLFQYLSKACELN-------SG-------NGCRFLGDFYENG 70 (138)
T ss_dssp HHHHHHHHHHHHHHHTTC--TTHH--HHHHTCTTSCHHHHHHHHHHHHHTT-------CH-------HHHHHHHHHHHHC
T ss_pred cCHHHHHHHHHHHHcCCC--Hhhh--HHHHHHcCCCHHHHHHHHHHHHcCC-------CH-------HHHHHHHHHHHcC
Confidence 467889999999998874 4444 9999999999999999999998871 22 388899999999
Q ss_pred ---hcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCcHHHHHHH
Q 008887 462 ---QEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCN----VGRNAEAEKYLRLAAAHNPQYNELLEQL 531 (550)
Q Consensus 462 ---~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~----~g~~~eA~~~l~~al~~~p~~~~~~~~l 531 (550)
.+++++|+++|+++.+..+ + .+.++||.+|.. .+++++|..+|+++.+. .+..+...+
T Consensus 71 ~g~~~d~~~A~~~~~~Aa~~g~---~-------~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~A~~~l 135 (138)
T 1klx_A 71 KYVKKDLRKAAQYYSKACGLND---Q-------DGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL--GSEDACGIL 135 (138)
T ss_dssp SSSCCCHHHHHHHHHHHHHTTC---H-------HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHC
T ss_pred CCCCccHHHHHHHHHHHHcCCC---H-------HHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHH
Confidence 8999999999999998752 3 899999999999 89999999999999987 344444433
No 186
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.79 E-value=3.2e-08 Score=104.99 Aligned_cols=118 Identities=12% Similarity=-0.056 Sum_probs=99.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCcccc
Q 008887 408 LMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSK 487 (550)
Q Consensus 408 ~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~ 487 (550)
..+..+..+|+|++|+..+++++++....-.++++.. ...+.++|.+|..+|+|++|+.++++++++.....+.+|
T Consensus 314 e~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~----a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~H 389 (490)
T 3n71_A 314 EKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYV----LRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNN 389 (490)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHH----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTC
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHH----HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCC
Confidence 3445567889999999999999999766666777633 247789999999999999999999999987645566777
Q ss_pred ccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-----CCcHHHHH
Q 008887 488 AHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHN-----PQYNELLE 529 (550)
Q Consensus 488 ~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~-----p~~~~~~~ 529 (550)
+..+..+.+||.+|..+|++++|+.+|++++++. |+++....
T Consensus 390 p~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~ 436 (490)
T 3n71_A 390 AQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKD 436 (490)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHH
Confidence 8899999999999999999999999999998754 77776544
No 187
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.78 E-value=1.6e-08 Score=82.79 Aligned_cols=70 Identities=13% Similarity=0.162 Sum_probs=49.3
Q ss_pred hCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhc
Q 008887 398 KEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGN 477 (550)
Q Consensus 398 ~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~ 477 (550)
.+|+++.+++.+|.+|...|++++|+++|++++++ +|.++ . +++++|.++...|++++|++.|+++++
T Consensus 2 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-----~p~~~-~------a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 2 EDPEDPFTRYALAQEHLKHDNASRALALFEELVET-----DPDYV-G------TYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp ---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----STTCT-H------HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCcH-H------HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 35777777777777777777777777777777777 66665 2 666777777777777777777777776
Q ss_pred CC
Q 008887 478 LK 479 (550)
Q Consensus 478 ~~ 479 (550)
+.
T Consensus 70 l~ 71 (100)
T 3ma5_A 70 VA 71 (100)
T ss_dssp HH
T ss_pred hh
Confidence 64
No 188
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.76 E-value=4.3e-08 Score=95.77 Aligned_cols=141 Identities=21% Similarity=0.191 Sum_probs=95.9
Q ss_pred HHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHH-----------------------------------------
Q 008887 371 ELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILM----------------------------------------- 409 (550)
Q Consensus 371 ~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~l----------------------------------------- 409 (550)
.++..|.-+ ..+++++|.+.|.++++.+|+.+++|.++
T Consensus 9 ~~~~~~~~~-~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~ 87 (282)
T 4f3v_A 9 SLFESAVSM-LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAI 87 (282)
T ss_dssp HHHHHHHHH-TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEEC
T ss_pred HHHHHHhcc-cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhcc
Confidence 445555554 46777777777777777777777777655
Q ss_pred ---------------------HHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHHhcCHHHH
Q 008887 410 ---------------------GQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEG 468 (550)
Q Consensus 410 ---------------------g~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA 468 (550)
+.++...|+|++|.+.|+.++.. + ++.. +.+.+|.++++.|++++|
T Consensus 88 ~g~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~-----~---p~~~-----~~~~~a~l~~~~~r~~dA 154 (282)
T 4f3v_A 88 GGLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVA-----G---SEHL-----VAWMKAVVYGAAERWTDV 154 (282)
T ss_dssp CTTTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCT-----T---CHHH-----HHHHHHHHHHHTTCHHHH
T ss_pred CCcccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-----C---CchH-----HHHHHHHHHHHcCCHHHH
Confidence 35566677777777777666444 2 2221 556678888888888888
Q ss_pred HHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CC-cHHHHHHH
Q 008887 469 IAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHN--PQ-YNELLEQL 531 (550)
Q Consensus 469 ~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~--p~-~~~~~~~l 531 (550)
+.+|+++.+. + ++ .....+++++|.++.++|++++|+.+|++++.-. |. ..+++..+
T Consensus 155 ~~~l~~a~~~--~-d~---~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~ 214 (282)
T 4f3v_A 155 IDQVKSAGKW--P-DK---FLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYL 214 (282)
T ss_dssp HHHHTTGGGC--S-CH---HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHH
T ss_pred HHHHHHhhcc--C-Cc---ccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHH
Confidence 8888776655 2 11 0112589999999999999999999999998654 54 44444433
No 189
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.76 E-value=6e-08 Score=95.93 Aligned_cols=147 Identities=13% Similarity=0.055 Sum_probs=113.5
Q ss_pred ChHHHHHHHHHHHHcCCCCChHHHHHHHHhhCC--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhH
Q 008887 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEP--DNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAI 445 (550)
Q Consensus 368 ~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p--~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~ 445 (550)
++..+..+|..+...|++++|++.+++.+..+| ++.+++...+.++.+.|+.+.|.+.+++..+. +|+.....
T Consensus 99 ~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~-----~~d~~~~~ 173 (310)
T 3mv2_B 99 SPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA-----IEDTVSGD 173 (310)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----SCHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-----Cccccccc
Confidence 445567899999999999999999999999987 89999999999999999999999999999888 44200001
Q ss_pred HHHHHHHHHHH--HHHHHhc--CHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHc-
Q 008887 446 DLLIVASQWSG--VACIRQE--KWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAH- 520 (550)
Q Consensus 446 ~~l~~a~~~lg--~~~~~~g--~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~- 520 (550)
+. ....++ .+....| ++.+|...|+++.+.. |+.. .....+. ++.++|++++|.+.++.+++.
T Consensus 174 d~---~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~-p~~~-------~~~lLln-~~~~~g~~~eAe~~L~~l~~~~ 241 (310)
T 3mv2_B 174 NE---MILNLAESYIKFATNKETATSNFYYYEELSQTF-PTWK-------TQLGLLN-LHLQQRNIAEAQGIVELLLSDY 241 (310)
T ss_dssp HH---HHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTS-CSHH-------HHHHHHH-HHHHHTCHHHHHHHHHHHHSHH
T ss_pred hH---HHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhC-CCcc-------cHHHHHH-HHHHcCCHHHHHHHHHHHHHhc
Confidence 11 222344 4466666 9999999999988875 5311 1223333 999999999999999987776
Q ss_pred ---------CCCcHHHHHHH
Q 008887 521 ---------NPQYNELLEQL 531 (550)
Q Consensus 521 ---------~p~~~~~~~~l 531 (550)
+|++++++.++
T Consensus 242 p~~~~k~~~~p~~~~~LaN~ 261 (310)
T 3mv2_B 242 YSVEQKENAVLYKPTFLANQ 261 (310)
T ss_dssp HHTTTCHHHHSSHHHHHHHH
T ss_pred ccccccccCCCCCHHHHHHH
Confidence 58888888554
No 190
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.76 E-value=2.2e-08 Score=87.65 Aligned_cols=111 Identities=17% Similarity=-0.012 Sum_probs=89.7
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCC
Q 008887 403 INALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPE 482 (550)
Q Consensus 403 ~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~ 482 (550)
..++..+|.++...|++++|+++++++++.... .. .......++.++|.++...|++++|+++++++++.. +.
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-----~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-~~ 81 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKE-----FG-DKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLA-RQ 81 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-----HT-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH-----hC-CchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HH
Confidence 467899999999999999999999999998422 11 122233478899999999999999999999999875 32
Q ss_pred CccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 008887 483 EPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHN 521 (550)
Q Consensus 483 ~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~ 521 (550)
. .+......++..+|.++...|++++|.+.++++++..
T Consensus 82 ~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 119 (164)
T 3ro3_A 82 L-KDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIA 119 (164)
T ss_dssp T-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred h-CCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 2 1222345789999999999999999999999998764
No 191
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=98.76 E-value=1.1e-08 Score=83.08 Aligned_cols=91 Identities=20% Similarity=0.246 Sum_probs=79.2
Q ss_pred HHHHHHHHHcCCCCChHHHHHHHHhhCCCChH-HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHH
Q 008887 373 IALSVKFLSKGDKERPIPLLQLALNKEPDNIN-ALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVA 451 (550)
Q Consensus 373 ~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~-a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a 451 (550)
++.|..+...|++++|++.|+++++.+|++.. +++.+|.+|...|++++|+++|++++++ +|.+.. +
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~-----~p~~~~-------~ 71 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL-----NPDSPA-------L 71 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----CTTSTH-------H
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCcHH-------H
Confidence 57899999999999999999999999999999 9999999999999999999999999999 888772 2
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCc
Q 008887 452 SQWSGVACIRQEKWEEGIAHLERIGNLKEPEEP 484 (550)
Q Consensus 452 ~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~ 484 (550)
+.+ +.+++++..|++++..+ |+..
T Consensus 72 ~~~--------~~~~~a~~~~~~~~~~~-p~~~ 95 (99)
T 2kc7_A 72 QAR--------KMVMDILNFYNKDMYNQ-LEHH 95 (99)
T ss_dssp HHH--------HHHHHHHHHHCCTTHHH-HCCS
T ss_pred HHH--------HHHHHHHHHHHHHhccC-cccc
Confidence 211 67788899998888776 5544
No 192
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=98.75 E-value=3.3e-08 Score=103.26 Aligned_cols=111 Identities=15% Similarity=0.061 Sum_probs=95.0
Q ss_pred HcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHH
Q 008887 415 QKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGL 494 (550)
Q Consensus 415 ~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~ 494 (550)
..|+|++|+..+++++++....-.|+++.. ...+.++|.+|..+|+|++|+.++++++++.+...+.+|+..+..+
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~----a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l 385 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYM----LHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMW 385 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHH----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHH----HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHH
Confidence 458999999999999999766667777633 2477899999999999999999999999876455667778899999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcC-----CCcHHHHH
Q 008887 495 VVLASALCNVGRNAEAEKYLRLAAAHN-----PQYNELLE 529 (550)
Q Consensus 495 ~~La~~~~~~g~~~eA~~~l~~al~~~-----p~~~~~~~ 529 (550)
.+||.+|..+|++++|+.+|++++++. |+++....
T Consensus 386 ~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~ 425 (433)
T 3qww_A 386 LKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISE 425 (433)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHH
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHH
Confidence 999999999999999999999998864 77776554
No 193
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=98.74 E-value=5.3e-08 Score=102.66 Aligned_cols=134 Identities=11% Similarity=0.010 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHcC---CCCChHHHHHHHHhhCCCChHHHHHHHHHHHHc----CCHHHHHHHHHHHHHHhhhcCCCCCh
Q 008887 370 KELIALSVKFLSKG---DKERPIPLLQLALNKEPDNINALILMGQTQLQK----GLLEEAVEYLECAISKLFLAGHPTEP 442 (550)
Q Consensus 370 ~~l~~la~~~~~~g---~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~----g~~~eA~~~~~~al~l~~~~~~p~~~ 442 (550)
...+.+|..+...| ++++|+++|+++.+..+.....++.+|.+|... +++++|+++|+++. . .++
T Consensus 177 ~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~-------g~~ 248 (452)
T 3e4b_A 177 ICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-P-------GYP 248 (452)
T ss_dssp THHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-G-------GST
T ss_pred HHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-C-------CCH
Confidence 34455555555555 555555555555555555555555555555433 45555555555543 2 111
Q ss_pred hhHHHHHHHHHHHHHH-H--HHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcC-----CHHHHHHHH
Q 008887 443 EAIDLLIVASQWSGVA-C--IRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVG-----RNAEAEKYL 514 (550)
Q Consensus 443 ~~~~~l~~a~~~lg~~-~--~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g-----~~~eA~~~l 514 (550)
.+++++|.+ + ...+++++|+++|+++.+.. ++ .+++++|.+|. .| ++++|+.+|
T Consensus 249 -------~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~-------~A~~~Lg~~y~-~G~g~~~d~~~A~~~~ 310 (452)
T 3e4b_A 249 -------ASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QP-------RAELLLGKLYY-EGKWVPADAKAAEAHF 310 (452)
T ss_dssp -------HHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CH-------HHHHHHHHHHH-HCSSSCCCHHHHHHHH
T ss_pred -------HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CH-------HHHHHHHHHHH-cCCCCCCCHHHHHHHH
Confidence 144445544 2 23455555555555554432 12 44555555544 33 455555555
Q ss_pred HHHHHcCCCcHHHHHHHH
Q 008887 515 RLAAAHNPQYNELLEQLE 532 (550)
Q Consensus 515 ~~al~~~p~~~~~~~~l~ 532 (550)
+++. +++..+...+.
T Consensus 311 ~~Aa---~g~~~A~~~Lg 325 (452)
T 3e4b_A 311 EKAV---GREVAADYYLG 325 (452)
T ss_dssp HTTT---TTCHHHHHHHH
T ss_pred HHHh---CCCHHHHHHHH
Confidence 5444 44444444443
No 194
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=98.73 E-value=1.9e-08 Score=105.03 Aligned_cols=117 Identities=13% Similarity=-0.031 Sum_probs=92.7
Q ss_pred HHHHHHHHcCCCCChHHHHHHHHhh-----CCCC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhH
Q 008887 374 ALSVKFLSKGDKERPIPLLQLALNK-----EPDN---INALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAI 445 (550)
Q Consensus 374 ~la~~~~~~g~~~~A~~~~~~aL~~-----~p~~---~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~ 445 (550)
+........|+|++|+++++++|+. .|++ ...+.++|.+|..+|+|++|+.++++++++....-.|.++...
T Consensus 303 e~~~~~~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a 382 (433)
T 3qww_A 303 EEFRRAKHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVA 382 (433)
T ss_dssp HHHHHHTTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHH
T ss_pred HHHHHhhhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHH
Confidence 4444555678999999999999983 3555 4668899999999999999999999999998777788888443
Q ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHH
Q 008887 446 DLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGL 494 (550)
Q Consensus 446 ~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~ 494 (550)
..++++|.+|..+|++++|+.+|++|+++.....+.+|+...+..
T Consensus 383 ----~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~l~ 427 (433)
T 3qww_A 383 ----SMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISEIK 427 (433)
T ss_dssp ----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHH
T ss_pred ----HHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHHHH
Confidence 477899999999999999999999999875333344444443333
No 195
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.72 E-value=6.6e-08 Score=79.06 Aligned_cols=84 Identities=12% Similarity=0.154 Sum_probs=69.9
Q ss_pred CCCChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008887 438 HPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLA 517 (550)
Q Consensus 438 ~p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~a 517 (550)
+|.++ .+++.+|.++...|++++|++.|+++++.+ |++. .+++.+|.+|...|++++|++.|+++
T Consensus 3 ~p~~~-------~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~-------~a~~~lg~~~~~~g~~~~A~~~~~~a 67 (100)
T 3ma5_A 3 DPEDP-------FTRYALAQEHLKHDNASRALALFEELVETD-PDYV-------GTYYHLGKLYERLDRTDDAIDTYAQG 67 (100)
T ss_dssp --CCH-------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCT-------HHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CccCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcH-------HHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 56665 378899999999999999999999999998 9888 89999999999999999999999999
Q ss_pred HHcCCCc--HHHHHHHHhhHH
Q 008887 518 AAHNPQY--NELLEQLENNDE 536 (550)
Q Consensus 518 l~~~p~~--~~~~~~l~~~~~ 536 (550)
+++.|+. ......+.....
T Consensus 68 l~l~~~~~~~~~~~~l~~~l~ 88 (100)
T 3ma5_A 68 IEVAREEGTQKDLSELQDAKL 88 (100)
T ss_dssp HHHHHHHSCHHHHHHHHHHHH
T ss_pred HhhhhcCCchhHHHHHHHHHH
Confidence 9987643 344455554333
No 196
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.72 E-value=4.2e-08 Score=101.78 Aligned_cols=145 Identities=10% Similarity=0.052 Sum_probs=101.9
Q ss_pred ChHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCCh-----------------HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008887 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNI-----------------NALILMGQTQLQKGLLEEAVEYLECAI 430 (550)
Q Consensus 368 ~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~-----------------~a~~~lg~~~~~~g~~~eA~~~~~~al 430 (550)
.|...++.|..+...|++++|++.|.++++.++... .++..+|.+|...|++++|.+++++++
T Consensus 3 ~p~~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~ 82 (434)
T 4b4t_Q 3 LPGSKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHST 82 (434)
T ss_dssp STTHHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTH
T ss_pred ChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 355677899999999999999999999999877643 368899999999999999999999998
Q ss_pred HHhhhcCCCCChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHH
Q 008887 431 SKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEA 510 (550)
Q Consensus 431 ~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA 510 (550)
... +... ...........+|.++...|++++|++.+++++... ... ........++..+|.+|...|++++|
T Consensus 83 ~~~-----~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~-~~~~~~~~~~~~la~~~~~~g~~~~A 154 (434)
T 4b4t_Q 83 EYM-----MQFA-KSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFA-KRE-KRVFLKHSLSIKLATLHYQKKQYKDS 154 (434)
T ss_dssp HHH-----HTSC-HHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHH-HHS-SCCSSHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHH-----HHcc-chHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH-HHh-CccHHHHHHHHHHHHHHHHccChHHH
Confidence 873 2212 111111244556666666777777777777766553 211 11223445666777777777777777
Q ss_pred HHHHHHHHHc
Q 008887 511 EKYLRLAAAH 520 (550)
Q Consensus 511 ~~~l~~al~~ 520 (550)
...+++++..
T Consensus 155 ~~~l~~~~~~ 164 (434)
T 4b4t_Q 155 LALINDLLRE 164 (434)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7777766553
No 197
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=98.72 E-value=6.3e-08 Score=101.20 Aligned_cols=120 Identities=15% Similarity=-0.053 Sum_probs=98.3
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCcccccc
Q 008887 410 GQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAH 489 (550)
Q Consensus 410 g~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~ 489 (550)
..-+..+|+|++|++.+++++++....-.|+++. +...+.++|.+|..+|+|++|+++++++++......+.+|+.
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~----~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~ 369 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIY----QLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPV 369 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHH----HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchH----HHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChH
Confidence 4446678999999999999998854444556653 334788999999999999999999999998754456677778
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-----CCcHHHHHHHHh
Q 008887 490 YYDGLVVLASALCNVGRNAEAEKYLRLAAAHN-----PQYNELLEQLEN 533 (550)
Q Consensus 490 ~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~-----p~~~~~~~~l~~ 533 (550)
.+..+.+||.+|..+|++++|+.+|++++++. |+++.....+..
T Consensus 370 ~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~ 418 (429)
T 3qwp_A 370 RGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILL 418 (429)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHH
Confidence 99999999999999999999999999998754 888776654433
No 198
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=98.70 E-value=2.5e-08 Score=80.89 Aligned_cols=90 Identities=14% Similarity=0.220 Sum_probs=52.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccc
Q 008887 407 ILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKS 486 (550)
Q Consensus 407 ~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~ 486 (550)
+.+|..+...|++++|++.|+++++. +|.+... +++++|.++...|++++|++.|+++++.+ |++.
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~------~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~-- 69 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQT-----EPVGKDE------AYYLMGNAYRKLGDWQKALNNYQSAIELN-PDSP-- 69 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHH-----CSSTHHH------HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTST--
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH-----CCCcHHH------HHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcH--
Confidence 44566666666666666666666666 5555411 45566666666666666666666666665 5555
Q ss_pred cccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 008887 487 KAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQ 523 (550)
Q Consensus 487 ~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~ 523 (550)
.++.. +.++++...|+++...+|+
T Consensus 70 -----~~~~~--------~~~~~a~~~~~~~~~~~p~ 93 (99)
T 2kc7_A 70 -----ALQAR--------KMVMDILNFYNKDMYNQLE 93 (99)
T ss_dssp -----HHHHH--------HHHHHHHHHHCCTTHHHHC
T ss_pred -----HHHHH--------HHHHHHHHHHHHHhccCcc
Confidence 33322 4455555555555555444
No 199
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=98.69 E-value=2.2e-07 Score=93.65 Aligned_cols=146 Identities=18% Similarity=0.111 Sum_probs=109.0
Q ss_pred CCCChHHHHHHHHHHHHcCC---CCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCH----HHHHHHHHHHHHHh-hhc
Q 008887 365 ENLTPKELIALSVKFLSKGD---KERPIPLLQLALNKEPDNINALILMGQTQLQKGLL----EEAVEYLECAISKL-FLA 436 (550)
Q Consensus 365 ~~l~~~~l~~la~~~~~~g~---~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~----~eA~~~~~~al~l~-~~~ 436 (550)
+++++-+++-.|..++..++ +.+|+.+|++|++.+|+++.++..++.+|.....+ ......++++++.. ...
T Consensus 192 ~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~ 271 (372)
T 3ly7_A 192 HRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLP 271 (372)
T ss_dssp SSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCG
T ss_pred CCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcc
Confidence 34566777888888887765 46899999999999999999999888888632211 11222222222221 011
Q ss_pred CCCCChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHH
Q 008887 437 GHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRL 516 (550)
Q Consensus 437 ~~p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~ 516 (550)
.+|.++ .++..++..+...|++++|++.++++++++ |+ . .++..+|.++.-.|++++|.+.|++
T Consensus 272 ~~~~~a-------~~~~alal~~l~~gd~d~A~~~l~rAl~Ln-~s-~-------~a~~llG~~~~~~G~~~eA~e~~~~ 335 (372)
T 3ly7_A 272 ELNNLS-------IIYQIKAVSALVKGKTDESYQAINTGIDLE-MS-W-------LNYVLLGKVYEMKGMNREAADAYLT 335 (372)
T ss_dssp GGTTCH-------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CC-H-------HHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cCCcCH-------HHHHHHHHHHHhCCCHHHHHHHHHHHHhcC-CC-H-------HHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 144444 256667888888899999999999999996 52 3 6888999999999999999999999
Q ss_pred HHHcCCCcHH
Q 008887 517 AAAHNPQYNE 526 (550)
Q Consensus 517 al~~~p~~~~ 526 (550)
+++++|....
T Consensus 336 AlrL~P~~~t 345 (372)
T 3ly7_A 336 AFNLRPGANT 345 (372)
T ss_dssp HHHHSCSHHH
T ss_pred HHhcCCCcCh
Confidence 9999998864
No 200
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.63 E-value=9.8e-08 Score=98.95 Aligned_cols=144 Identities=10% Similarity=0.038 Sum_probs=116.2
Q ss_pred HHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCCh------HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChh
Q 008887 370 KELIALSVKFLSKGDKERPIPLLQLALNKEPDNI------NALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPE 443 (550)
Q Consensus 370 ~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~------~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~ 443 (550)
+.+.++|..|...|++++|.++++++++..+... .+...+|.++...|++++|++++++++......++....
T Consensus 56 ~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~- 134 (434)
T 4b4t_Q 56 TSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLK- 134 (434)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSH-
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHH-
Confidence 3567999999999999999999999998655432 345678899999999999999999999885433222221
Q ss_pred hHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 008887 444 AIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHN 521 (550)
Q Consensus 444 ~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~ 521 (550)
...+.++|.++...|+|++|+..+++++... . ...++....+++..+|.+|...|++++|...+++++...
T Consensus 135 -----~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 205 (434)
T 4b4t_Q 135 -----HSLSIKLATLHYQKKQYKDSLALINDLLREF-K-KLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAA 205 (434)
T ss_dssp -----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-T-TSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHccChHHHHHHHHHHHHHH-H-hcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHh
Confidence 1367789999999999999999999988763 2 222344567899999999999999999999999998765
No 201
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=98.54 E-value=1.6e-06 Score=91.17 Aligned_cols=143 Identities=15% Similarity=0.107 Sum_probs=114.6
Q ss_pred ChHHHHHHHHHHHHcCCCCChHHHHHHHHh-hCCCChHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHhhhcCCCCChh
Q 008887 368 TPKELIALSVKFLSKGDKERPIPLLQLALN-KEPDNINALILMGQTQLQKG---LLEEAVEYLECAISKLFLAGHPTEPE 443 (550)
Q Consensus 368 ~~~~l~~la~~~~~~g~~~~A~~~~~~aL~-~~p~~~~a~~~lg~~~~~~g---~~~eA~~~~~~al~l~~~~~~p~~~~ 443 (550)
++...+.+|..+...+.++++....++..+ ....++.+++.+|.+|...| ++++|+++|+++.+. ++...
T Consensus 140 ~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~-----g~~~a- 213 (452)
T 3e4b_A 140 YPEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSR-----GTVTA- 213 (452)
T ss_dssp CTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHT-----TCSCH-
T ss_pred CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHC-----CCHHH-
Confidence 466788999999999988887776444433 22345559999999999999 999999999999998 55554
Q ss_pred hHHHHHHHHHHHHHHHHHh----cCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHH-H--HhcCCHHHHHHHHHH
Q 008887 444 AIDLLIVASQWSGVACIRQ----EKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASA-L--CNVGRNAEAEKYLRL 516 (550)
Q Consensus 444 ~~~~l~~a~~~lg~~~~~~----g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~-~--~~~g~~~eA~~~l~~ 516 (550)
..++++|.+|... +++++|+++|+++. +.++ .+++.+|.+ | ...|++++|.++|++
T Consensus 214 ------~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa----~g~~-------~a~~~Lg~~~~~~~~~~d~~~A~~~~~~ 276 (452)
T 3e4b_A 214 ------QRVDSVARVLGDATLGTPDEKTAQALLEKIA----PGYP-------ASWVSLAQLLYDFPELGDVEQMMKYLDN 276 (452)
T ss_dssp ------HHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG----GGST-------HHHHHHHHHHHHSGGGCCHHHHHHHHHH
T ss_pred ------HHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc----CCCH-------HHHHHHHHHHHhCCCCCCHHHHHHHHHH
Confidence 1457899999765 79999999999998 3334 899999999 5 578999999999999
Q ss_pred HHHcCCCcHHHHHHHHhhH
Q 008887 517 AAAHNPQYNELLEQLENND 535 (550)
Q Consensus 517 al~~~p~~~~~~~~l~~~~ 535 (550)
+.+. ++..+...+....
T Consensus 277 Aa~~--g~~~A~~~Lg~~y 293 (452)
T 3e4b_A 277 GRAA--DQPRAELLLGKLY 293 (452)
T ss_dssp HHHT--TCHHHHHHHHHHH
T ss_pred HHHC--CCHHHHHHHHHHH
Confidence 9865 4777777776643
No 202
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=98.49 E-value=1.6e-06 Score=99.83 Aligned_cols=160 Identities=17% Similarity=0.100 Sum_probs=112.2
Q ss_pred ChHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh------------
Q 008887 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFL------------ 435 (550)
Q Consensus 368 ~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~------------ 435 (550)
+++.++++|..+...|++++|++.|.++ +++..+..+|.++.+.|+|++|+++|+.|.+....
T Consensus 1104 ~p~vWsqLAKAql~~G~~kEAIdsYiKA-----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYA 1178 (1630)
T 1xi4_A 1104 EPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALA 1178 (1630)
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHH
Confidence 5778889999999999999999999886 88999999999999999999999999887765200
Q ss_pred -----------cCCCCChhhHHHH-------------------HHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCC---
Q 008887 436 -----------AGHPTEPEAIDLL-------------------IVASQWSGVACIRQEKWEEGIAHLERIGNLKEPE--- 482 (550)
Q Consensus 436 -----------~~~p~~~~~~~~l-------------------~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~--- 482 (550)
...++.. ....+ ...|..+|.++.+.|++++|++.++++.... .=
T Consensus 1179 Kl~rleele~fI~~~n~a-d~~~iGd~le~eg~YeeA~~~Y~kA~ny~rLA~tLvkLge~q~AIEaarKA~n~~-aWkev 1256 (1630)
T 1xi4_A 1179 KTNRLAELEEFINGPNNA-HIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTR-TWKEV 1256 (1630)
T ss_pred hhcCHHHHHHHHhCCCHH-HHHHHHHHHHhcCCHHHHHHHHHhhhHHHHHHHHHHHhCCHHHHHHHHHHhCCHH-HHHHH
Confidence 0000000 00000 0134446666667777777777777764332 10
Q ss_pred ---C------------ccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHHHHHHHhh
Q 008887 483 ---E------------PKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQLENN 534 (550)
Q Consensus 483 ---~------------~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~l~~~ 534 (550)
+ ..+.....+.+..++..|...|.+++|+.+++.++.+++.+......+...
T Consensus 1257 ~~acve~~Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiL 1323 (1630)
T 1xi4_A 1257 CFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAIL 1323 (1630)
T ss_pred HHHHhhhhHHHHHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHH
Confidence 0 000001224566788889999999999999999999999998888766654
No 203
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.41 E-value=1.5e-06 Score=71.57 Aligned_cols=82 Identities=13% Similarity=0.007 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHHHHH
Q 008887 451 ASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQ 530 (550)
Q Consensus 451 a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~ 530 (550)
-.+.+|..+++.|+|++|+.+|++|++.. +.+.........++..+|.+|.++|++++|..+++++++++|++..+..+
T Consensus 7 dc~~lG~~~~~~~~y~~A~~W~~~Al~~~-~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n 85 (104)
T 2v5f_A 7 DCFELGKVAYTEADYYHTELWMEQALRQL-DEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGN 85 (104)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhh-hccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhh
Confidence 34579999999999999999999999874 22221223455889999999999999999999999999999999998777
Q ss_pred HHh
Q 008887 531 LEN 533 (550)
Q Consensus 531 l~~ 533 (550)
+..
T Consensus 86 ~~~ 88 (104)
T 2v5f_A 86 LKY 88 (104)
T ss_dssp HHH
T ss_pred HHH
Confidence 764
No 204
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.37 E-value=2.6e-06 Score=84.15 Aligned_cols=144 Identities=12% Similarity=-0.007 Sum_probs=110.9
Q ss_pred ChHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCC------ChHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHhhhcCCC
Q 008887 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPD------NINALILMGQTQLQKG--LLEEAVEYLECAISKLFLAGHP 439 (550)
Q Consensus 368 ~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~------~~~a~~~lg~~~~~~g--~~~eA~~~~~~al~l~~~~~~p 439 (550)
+.+.....+..++..|+.+.|.+.+++..+.+|+ .......-|++.+..| ++++|...|+++.+. .|
T Consensus 135 ~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~-----~p 209 (310)
T 3mv2_B 135 TTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT-----FP 209 (310)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT-----SC
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh-----CC
Confidence 3445568889999999999999999999999983 3333344465577777 999999999998766 44
Q ss_pred CChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCC---------CCCCccccccchhHHHHHHHHHHhcCCHHHH
Q 008887 440 TEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLK---------EPEEPKSKAHYYDGLVVLASALCNVGRNAEA 510 (550)
Q Consensus 440 ~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~---------~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA 510 (550)
+.. .. ...++ ++..+|++++|.+.++.+++.. +|+++ +++.++..+...+|+ +|
T Consensus 210 ~~~-~~----~lLln---~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~-------~~LaN~i~l~~~lgk--~a 272 (310)
T 3mv2_B 210 TWK-TQ----LGLLN---LHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKP-------TFLANQITLALMQGL--DT 272 (310)
T ss_dssp SHH-HH----HHHHH---HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHH-------HHHHHHHHHHHHTTC--TT
T ss_pred Ccc-cH----HHHHH---HHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCH-------HHHHHHHHHHHHhCh--HH
Confidence 311 10 12222 8999999999999999877752 15455 899899999888998 99
Q ss_pred HHHHHHHHHcCCCcHHHHHHHHh
Q 008887 511 EKYLRLAAAHNPQYNELLEQLEN 533 (550)
Q Consensus 511 ~~~l~~al~~~p~~~~~~~~l~~ 533 (550)
.++++++.+.+|+++-....-++
T Consensus 273 ~~l~~qL~~~~P~hp~i~d~~~k 295 (310)
T 3mv2_B 273 EDLTNQLVKLDHEHAFIKHHQEI 295 (310)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHH
T ss_pred HHHHHHHHHhCCCChHHHHHHHH
Confidence 99999999999999977665444
No 205
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=98.35 E-value=2.4e-06 Score=74.87 Aligned_cols=98 Identities=19% Similarity=0.125 Sum_probs=78.9
Q ss_pred HHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHHhc---CHHHHHHHHHHHhcCCCC-CCccccccchhHH
Q 008887 419 LEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQE---KWEEGIAHLERIGNLKEP-EEPKSKAHYYDGL 494 (550)
Q Consensus 419 ~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~g---~~~eA~~~~~~al~~~~p-~~~~~~~~~~~~~ 494 (550)
...+.+.|++.+.. ++.+. .+.+++|.++.+.+ +.++|+..++++++.+.| +.. +++
T Consensus 14 l~~~~~~y~~e~~~-----~~~~~-------~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~r-------d~l 74 (152)
T 1pc2_A 14 LLKFEKKFQSEKAA-----GSVSK-------STQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQR-------DYV 74 (152)
T ss_dssp HHHHHHHHHHHHHT-----TCCCH-------HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHH-------HHH
T ss_pred HHHHHHHHHHHHcc-----CCCcH-------HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchH-------HHH
Confidence 44566777777665 55443 37888999999988 777999999999987422 223 899
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHHHHHHHhhH
Q 008887 495 VVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQLENND 535 (550)
Q Consensus 495 ~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~l~~~~ 535 (550)
|++|..|.+.|+|++|+++++++++++|++.++....+.+.
T Consensus 75 Y~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n~QA~~Lk~~ie 115 (152)
T 1pc2_A 75 FYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLID 115 (152)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999887665533
No 206
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.34 E-value=7.1e-06 Score=66.12 Aligned_cols=65 Identities=23% Similarity=0.227 Sum_probs=39.4
Q ss_pred ChHHHHHHHHHHHHcCC---CCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 008887 368 TPKELIALSVKFLSKGD---KERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISK 432 (550)
Q Consensus 368 ~~~~l~~la~~~~~~g~---~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l 432 (550)
+++.+..+|..++..++ .++|..+++++|+.+|+++.+++.+|..+++.|+|++|+.+++++++.
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 45555566665554443 455666666666666666666666666666666666666666666655
No 207
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.33 E-value=2e-06 Score=74.80 Aligned_cols=89 Identities=18% Similarity=0.121 Sum_probs=80.5
Q ss_pred HHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHH
Q 008887 375 LSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQ----KGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIV 450 (550)
Q Consensus 375 la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~----~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~ 450 (550)
+|..|...+..++|+++|+++.+. +++.+++++|.+|.. .+++++|+++|+++.+.. ++ .
T Consensus 31 lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g-------~~-------~ 94 (138)
T 1klx_A 31 LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN-------DQ-------D 94 (138)
T ss_dssp HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT-------CH-------H
T ss_pred HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcCC-------CH-------H
Confidence 888888888888999999999887 789999999999999 999999999999998871 22 3
Q ss_pred HHHHHHHHHHH----hcCHHHHHHHHHHHhcCC
Q 008887 451 ASQWSGVACIR----QEKWEEGIAHLERIGNLK 479 (550)
Q Consensus 451 a~~~lg~~~~~----~g~~~eA~~~~~~al~~~ 479 (550)
+.+++|.+|.. .+++++|+++|+++.+..
T Consensus 95 a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 95 GCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 78899999999 999999999999999986
No 208
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.32 E-value=3.8e-06 Score=67.71 Aligned_cols=39 Identities=18% Similarity=0.082 Sum_probs=26.1
Q ss_pred CCCChHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHhhhcCCCCCh
Q 008887 399 EPDNINALILMGQTQLQKGL---LEEAVEYLECAISKLFLAGHPTEP 442 (550)
Q Consensus 399 ~p~~~~a~~~lg~~~~~~g~---~~eA~~~~~~al~l~~~~~~p~~~ 442 (550)
+|++++.+..+|.+++..++ .++|...++++++. +|+++
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~-----dp~~~ 43 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQL-----EPYNE 43 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHH-----CTTCH
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH-----CcCCH
Confidence 46667777777777765555 56777777777777 66666
No 209
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=98.32 E-value=1.6e-06 Score=89.55 Aligned_cols=128 Identities=13% Similarity=0.019 Sum_probs=96.3
Q ss_pred HHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHH
Q 008887 371 ELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIV 450 (550)
Q Consensus 371 ~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~ 450 (550)
++..+|..+...|++++|..+|.++ ..+..+|.++.+.|++++|++.++++.. + .
T Consensus 124 a~~~IGd~~~~~g~yeeA~~~Y~~a--------~n~~~LA~~L~~Lg~yq~AVea~~KA~~----------~-------~ 178 (449)
T 1b89_A 124 HIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKANS----------T-------R 178 (449)
T ss_dssp -------------CTTTHHHHHHHT--------TCHHHHHHHHHTTTCHHHHHHHHHHHTC----------H-------H
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHh--------hhHHHHHHHHHHhccHHHHHHHHHHcCC----------c-------h
Confidence 6668999999999999999999987 4688999999999999999999999932 2 2
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHHHHH
Q 008887 451 ASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQ 530 (550)
Q Consensus 451 a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~ 530 (550)
+|...+.++...|+++.|..+..+ +... | +-...+..+|.+.|++++|+.++++++.+++.+......
T Consensus 179 ~Wk~v~~aCv~~~ef~lA~~~~l~-L~~~-a----------d~l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~fte 246 (449)
T 1b89_A 179 TWKEVCFACVDGKEFRLAQMCGLH-IVVH-A----------DELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTE 246 (449)
T ss_dssp HHHHHHHHHHHTTCHHHHHHTTTT-TTTC-H----------HHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHH
T ss_pred hHHHHHHHHHHcCcHHHHHHHHHH-HHhC-H----------hhHHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHH
Confidence 677788999999999999777665 3233 3 445568889999999999999999999999999888887
Q ss_pred HHhhH
Q 008887 531 LENND 535 (550)
Q Consensus 531 l~~~~ 535 (550)
+....
T Consensus 247 l~il~ 251 (449)
T 1b89_A 247 LAILY 251 (449)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76543
No 210
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=98.25 E-value=5.8e-06 Score=80.07 Aligned_cols=116 Identities=21% Similarity=0.187 Sum_probs=96.3
Q ss_pred HHHHHHh-hCCCChHHHHHHHHHHHH-----cCC------HHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHH
Q 008887 391 LLQLALN-KEPDNINALILMGQTQLQ-----KGL------LEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVA 458 (550)
Q Consensus 391 ~~~~aL~-~~p~~~~a~~~lg~~~~~-----~g~------~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~ 458 (550)
-+.+++. .+|++++++++.|.+... .|+ ..+|...+++++++ +|+..+. .+|..+|..
T Consensus 139 ~~~~~l~~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleL-----DP~~~~G-----sA~~~LG~l 208 (301)
T 3u64_A 139 RLHKVLSRCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDL-----WPSYQEG-----AVWNVLTKF 208 (301)
T ss_dssp HHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHH-----CTTHHHH-----HHHHHHHHH
T ss_pred hHHHHHHHcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHh-----CCCcccC-----HHHHHHHHH
Confidence 3455555 678899999999888754 233 45899999999999 8885533 278889999
Q ss_pred HHHh-----cCHHHHHHHHHHHhcCCCCCC-ccccccchhHHHHHHHHHHh-cCCHHHHHHHHHHHHHcCCCc
Q 008887 459 CIRQ-----EKWEEGIAHLERIGNLKEPEE-PKSKAHYYDGLVVLASALCN-VGRNAEAEKYLRLAAAHNPQY 524 (550)
Q Consensus 459 ~~~~-----g~~~eA~~~~~~al~~~~p~~-~~~~~~~~~~~~~La~~~~~-~g~~~eA~~~l~~al~~~p~~ 524 (550)
|... |+.++|.++|++++++. |+. . ..++.+|+.+.. .|++++|.++++++++.+|..
T Consensus 209 Y~~vPp~~gGd~ekA~~~ferAL~Ln-P~~~i-------d~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~ 273 (301)
T 3u64_A 209 YAAAPESFGGGMEKAHTAFEHLTRYC-SAHDP-------DHHITYADALCIPLNNRAGFDEALDRALAIDPES 273 (301)
T ss_dssp HHHSCTTTTCCHHHHHHHHHHHHHHC-CTTCS-------HHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGG
T ss_pred HHhCCCccCCCHHHHHHHHHHHHHhC-CCCCc-------hHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCC
Confidence 9884 99999999999999998 854 7 999999999988 599999999999999988774
No 211
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.23 E-value=6.4e-06 Score=67.78 Aligned_cols=71 Identities=18% Similarity=0.209 Sum_probs=65.5
Q ss_pred CChHHHHHHHHHHHHcCCCCChHHHHHHHHhhC-------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCC
Q 008887 367 LTPKELIALSVKFLSKGDKERPIPLLQLALNKE-------PDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHP 439 (550)
Q Consensus 367 l~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~-------p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p 439 (550)
+++++.+++|..++..|+|++|+..|++|++.. .....++..+|.++.+.|++++|+.++++++++ +|
T Consensus 3 Lsa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l-----~P 77 (104)
T 2v5f_A 3 LTAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL-----DP 77 (104)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CT
T ss_pred CCHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc-----CC
Confidence 688999999999999999999999999999953 345788999999999999999999999999999 88
Q ss_pred CCh
Q 008887 440 TEP 442 (550)
Q Consensus 440 ~~~ 442 (550)
++.
T Consensus 78 ~~~ 80 (104)
T 2v5f_A 78 EHQ 80 (104)
T ss_dssp TCH
T ss_pred CCH
Confidence 887
No 212
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=98.22 E-value=5.4e-06 Score=72.64 Aligned_cols=87 Identities=10% Similarity=0.057 Sum_probs=74.3
Q ss_pred CChHHHHHHHHhhCCCChHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHhhhcCC-CCChhhHHHHHHHHHHHHHHHHH
Q 008887 386 ERPIPLLQLALNKEPDNINALILMGQTQLQKG---LLEEAVEYLECAISKLFLAGH-PTEPEAIDLLIVASQWSGVACIR 461 (550)
Q Consensus 386 ~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g---~~~eA~~~~~~al~l~~~~~~-p~~~~~~~~l~~a~~~lg~~~~~ 461 (550)
..+.+.|++.++.++.+.++.+.+|.++.+.+ +.++++..+++.++. + |.+. . +++|++|..+++
T Consensus 15 ~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~-----~~p~~~-r-----d~lY~LAv~~~k 83 (152)
T 1pc2_A 15 LKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPK-----GSKEEQ-R-----DYVFYLAVGNYR 83 (152)
T ss_dssp HHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH-----SCHHHH-H-----HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-----CCccch-H-----HHHHHHHHHHHH
Confidence 34667788888888899999999999999988 777999999999998 4 3222 2 388899999999
Q ss_pred hcCHHHHHHHHHHHhcCCCCCCc
Q 008887 462 QEKWEEGIAHLERIGNLKEPEEP 484 (550)
Q Consensus 462 ~g~~~eA~~~~~~al~~~~p~~~ 484 (550)
.|+|++|+++++++++.+ |++.
T Consensus 84 l~~Y~~A~~y~~~lL~ie-P~n~ 105 (152)
T 1pc2_A 84 LKEYEKALKYVRGLLQTE-PQNN 105 (152)
T ss_dssp TSCHHHHHHHHHHHHHHC-TTCH
T ss_pred ccCHHHHHHHHHHHHhcC-CCCH
Confidence 999999999999999998 8776
No 213
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=98.11 E-value=0.00013 Score=80.41 Aligned_cols=160 Identities=16% Similarity=0.108 Sum_probs=121.0
Q ss_pred CChHHHHHHHHHHHHcCCCCChH-HHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh------cCCC
Q 008887 367 LTPKELIALSVKFLSKGDKERPI-PLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFL------AGHP 439 (550)
Q Consensus 367 l~~~~l~~la~~~~~~g~~~~A~-~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~------~~~p 439 (550)
..++-.+..|..+...|+.++|. +.|++|+...|.+...+..++......|++++|.+.|++++..... ...|
T Consensus 341 ~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p 420 (679)
T 4e6h_A 341 FAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDP 420 (679)
T ss_dssp TCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHST
T ss_pred CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccC
Confidence 46666778888888999999997 9999999999999999999999999999999999999999976200 0013
Q ss_pred CChhhH----HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCC-HHHHHHHH
Q 008887 440 TEPEAI----DLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGR-NAEAEKYL 514 (550)
Q Consensus 440 ~~~~~~----~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~-~~eA~~~l 514 (550)
.+.... ......|...+....+.|+.+.|.+.|++|++...+... ..+...|.+....|+ .++|...|
T Consensus 421 ~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~-------~lyi~~A~lE~~~~~d~e~Ar~if 493 (679)
T 4e6h_A 421 TNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTP-------DIYLENAYIEYHISKDTKTACKVL 493 (679)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCT-------HHHHHHHHHHHTTTSCCHHHHHHH
T ss_pred cchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCh-------HHHHHHHHHHHHhCCCHHHHHHHH
Confidence 211000 012235667778888899999999999999987202222 567777777666654 89999999
Q ss_pred HHHHHcCCCcHHHHHHHHh
Q 008887 515 RLAAAHNPQYNELLEQLEN 533 (550)
Q Consensus 515 ~~al~~~p~~~~~~~~l~~ 533 (550)
+++++..|+....+....+
T Consensus 494 e~~Lk~~p~~~~~w~~y~~ 512 (679)
T 4e6h_A 494 ELGLKYFATDGEYINKYLD 512 (679)
T ss_dssp HHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHCCCchHHHHHHHH
Confidence 9999999998887754433
No 214
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=98.06 E-value=7.2e-06 Score=79.41 Aligned_cols=83 Identities=16% Similarity=0.059 Sum_probs=73.7
Q ss_pred ChHHHHHHHHhhCCC--ChHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHHhhhcCCCCC-hhhHHHHHHHHHHHHHH
Q 008887 387 RPIPLLQLALNKEPD--NINALILMGQTQLQK-----GLLEEAVEYLECAISKLFLAGHPTE-PEAIDLLIVASQWSGVA 458 (550)
Q Consensus 387 ~A~~~~~~aL~~~p~--~~~a~~~lg~~~~~~-----g~~~eA~~~~~~al~l~~~~~~p~~-~~~~~~l~~a~~~lg~~ 458 (550)
+|...++++++++|+ +..+|..+|.+|.+. |+.++|.++|++|+++ +|+. . . .++.+|..
T Consensus 181 ~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~L-----nP~~~i-d------~~v~YA~~ 248 (301)
T 3u64_A 181 AAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRY-----CSAHDP-D------HHITYADA 248 (301)
T ss_dssp HHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHH-----CCTTCS-H------HHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHh-----CCCCCc-h------HHHHHHHH
Confidence 588999999999999 667999999999995 9999999999999999 8865 4 3 66778988
Q ss_pred HHH-hcCHHHHHHHHHHHhcCCCCC
Q 008887 459 CIR-QEKWEEGIAHLERIGNLKEPE 482 (550)
Q Consensus 459 ~~~-~g~~~eA~~~~~~al~~~~p~ 482 (550)
+.. +|++++|.++++++++.. |+
T Consensus 249 l~~~~gd~~~a~~~L~kAL~a~-p~ 272 (301)
T 3u64_A 249 LCIPLNNRAGFDEALDRALAID-PE 272 (301)
T ss_dssp TTTTTTCHHHHHHHHHHHHHCC-GG
T ss_pred HHHhcCCHHHHHHHHHHHHcCC-CC
Confidence 877 599999999999999996 54
No 215
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=98.00 E-value=3.3e-06 Score=87.29 Aligned_cols=112 Identities=19% Similarity=0.208 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHH
Q 008887 371 ELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIV 450 (550)
Q Consensus 371 ~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~ 450 (550)
.....+..+...|++++|+.+++.+.+..++ +.+...++.+|.+.|+++++.++++ .|+. .
T Consensus 63 ~y~~V~~~ae~~g~~EeAi~yl~~ark~~~~-~~i~~~Li~~Y~Klg~l~e~e~f~~----------~pn~--------~ 123 (449)
T 1b89_A 63 SYMEVVQAANTSGNWEELVKYLQMARKKARE-SYVETELIFALAKTNRLAELEEFIN----------GPNN--------A 123 (449)
T ss_dssp -----------------------------------------------CHHHHTTTTT----------CC-----------
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHhCcc-chhHHHHHHHHHHhCCHHHHHHHHc----------CCcH--------H
Confidence 3445555555566666666666655553222 3444445555555555555444331 1111 1
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008887 451 ASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLA 517 (550)
Q Consensus 451 a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~a 517 (550)
+++++|.++...|+|++|..+|.++ ..|..+|.|+.++|++++|++.++++
T Consensus 124 a~~~IGd~~~~~g~yeeA~~~Y~~a----------------~n~~~LA~~L~~Lg~yq~AVea~~KA 174 (449)
T 1b89_A 124 HIQQVGDRCYDEKMYDAAKLLYNNV----------------SNFGRLASTLVHLGEYQAAVDGARKA 174 (449)
T ss_dssp -------------CTTTHHHHHHHT----------------TCHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHh----------------hhHHHHHHHHHHhccHHHHHHHHHHc
Confidence 5566677777777777777777653 13566777777777777777777766
No 216
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=97.97 E-value=2.8e-05 Score=89.77 Aligned_cols=113 Identities=18% Similarity=0.160 Sum_probs=79.0
Q ss_pred HHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHH
Q 008887 374 ALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQ 453 (550)
Q Consensus 374 ~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~ 453 (550)
++|..+...|++++|..+|+++- .+ ...+...+...|++++|.++++++-. + .+|+
T Consensus 1054 eIA~Iai~lglyEEAf~IYkKa~----~~---~~A~~VLie~i~nldrAiE~Aervn~----------p-------~vWs 1109 (1630)
T 1xi4_A 1054 DIANIAISNELFEEAFAIFRKFD----VN---TSAVQVLIEHIGNLDRAYEFAERCNE----------P-------AVWS 1109 (1630)
T ss_pred HHHHHHHhCCCHHHHHHHHHHcC----CH---HHHHHHHHHHHhhHHHHHHHHHhcCC----------H-------HHHH
Confidence 46888899999999999999862 11 11123334466777777777665511 1 2677
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 008887 454 WSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQ 523 (550)
Q Consensus 454 ~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~ 523 (550)
.+|.++.+.|++++|++.|.++ +++ ..+..+|.++.+.|++++|+++|..+.+..++
T Consensus 1110 qLAKAql~~G~~kEAIdsYiKA------dD~-------say~eVa~~~~~lGkyEEAIeyL~mArk~~~e 1166 (1630)
T 1xi4_A 1110 QLAKAQLQKGMVKEAIDSYIKA------DDP-------SSYMEVVQAANTSGNWEELVKYLQMARKKARE 1166 (1630)
T ss_pred HHHHHHHhCCCHHHHHHHHHhc------CCh-------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhccc
Confidence 7888888888888888888764 333 67778888888888888888888877766643
No 217
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=97.83 E-value=0.00019 Score=60.54 Aligned_cols=100 Identities=17% Similarity=0.065 Sum_probs=77.4
Q ss_pred CCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHHhcCHHH---HHHHHHHHhcCCCCCCccccccchhH
Q 008887 417 GLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEE---GIAHLERIGNLKEPEEPKSKAHYYDG 493 (550)
Q Consensus 417 g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~g~~~e---A~~~~~~al~~~~p~~~~~~~~~~~~ 493 (550)
.....+.+.|++.... ++... .+.+++|.++.+.++.++ ++..++..++...| . ..-+.
T Consensus 15 ~~l~~~~~~y~~e~~~-----~~~s~-------~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p---~---~~Rd~ 76 (126)
T 1nzn_A 15 EDLLKFEKKFQSEKAA-----GSVSK-------STQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSK---E---EQRDY 76 (126)
T ss_dssp HHHHHHHHHHHHHHHH-----SCCCH-------HHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCH---H---HHHHH
T ss_pred HHHHHHHHHHHHHhcc-----CCCcH-------HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCc---c---hHHHH
Confidence 3455666777777665 44333 277789999998887777 99999998876422 1 12288
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHHHHHHHhh
Q 008887 494 LVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQLENN 534 (550)
Q Consensus 494 ~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~l~~~ 534 (550)
++.||..+.+.|+|++|+++++.+|+++|++.++......+
T Consensus 77 lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~QA~~Lk~~i 117 (126)
T 1nzn_A 77 VFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLI 117 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999987765553
No 218
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=97.79 E-value=8.2e-05 Score=65.59 Aligned_cols=123 Identities=15% Similarity=0.114 Sum_probs=88.6
Q ss_pred HHHHHHHHHHHcCCCCChHHHHHHHHhhC---CCC------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcC-CCC
Q 008887 371 ELIALSVKFLSKGDKERPIPLLQLALNKE---PDN------INALILMGQTQLQKGLLEEAVEYLECAISKLFLAG-HPT 440 (550)
Q Consensus 371 ~l~~la~~~~~~g~~~~A~~~~~~aL~~~---p~~------~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~-~p~ 440 (550)
.+++.....+..|.|+.|+-+...++... ++- .+++..+|++++..|+|..|...|++++...+... ++.
T Consensus 22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s 101 (167)
T 3ffl_A 22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSK 101 (167)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-----
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 45678889999999999999999977744 331 34789999999999999999999999988854211 110
Q ss_pred ----------Chh--hHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHH
Q 008887 441 ----------EPE--AIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALC 502 (550)
Q Consensus 441 ----------~~~--~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~ 502 (550)
.+. ....-.+..|.++.|+.+.|++++|+..++..-.. .+.+ .....||++|.
T Consensus 102 ~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k--~Rt~-------kvnm~LakLy~ 166 (167)
T 3ffl_A 102 VRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSR--QRTP-------KINMLLANLYK 166 (167)
T ss_dssp ---------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGG--GCCH-------HHHHHHHHHCC
T ss_pred ccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCch--hcCH-------HHHHHHHHHhc
Confidence 000 00000136678999999999999999999874333 2333 78888888763
No 219
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=97.68 E-value=0.00043 Score=59.71 Aligned_cols=122 Identities=10% Similarity=-0.035 Sum_probs=95.3
Q ss_pred hCCCChHHHHHHHHHHHHcCCH------HHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHHhcCHHHHHHH
Q 008887 398 KEPDNINALILMGQTQLQKGLL------EEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAH 471 (550)
Q Consensus 398 ~~p~~~~a~~~lg~~~~~~g~~------~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~ 471 (550)
..|.+++.|........+.|+. ++-++.|++|+... -|........++..|...|.. ...++.++|.+.
T Consensus 8 ~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~----Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~v 82 (161)
T 4h7y_A 8 MMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEAL----PPDKYGQNESFARIQVRFAEL-KAIQEPDDARDY 82 (161)
T ss_dssp --CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHS----CGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHH
T ss_pred eCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcC----CccccccHHHHHHHHHHHHHH-HHhcCHHHHHHH
Confidence 5789999999999999988999 88889999999884 222122233333455566644 567999999999
Q ss_pred HHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHHHHHHH
Q 008887 472 LERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQLE 532 (550)
Q Consensus 472 ~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~l~ 532 (550)
|+.++... ... +.+|...|+--.++|+.++|++.+.+++.+.|...+..+..-
T Consensus 83 y~~a~~~h-KkF-------AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le~a~ 135 (161)
T 4h7y_A 83 FQMARANC-KKF-------AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLEIAL 135 (161)
T ss_dssp HHHHHHHC-TTB-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHHHHH
T ss_pred HHHHHHHh-HHH-------HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHHHHH
Confidence 99998874 544 489999999999999999999999999999999887665443
No 220
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=97.46 E-value=0.00089 Score=73.64 Aligned_cols=145 Identities=8% Similarity=-0.105 Sum_probs=113.8
Q ss_pred HHHHHHHHHHHcCCCCChHHHHHHHHhh-CCCChHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHhhhcCCCCChhhHHHH
Q 008887 371 ELIALSVKFLSKGDKERPIPLLQLALNK-EPDNINALILMGQTQLQKG-LLEEAVEYLECAISKLFLAGHPTEPEAIDLL 448 (550)
Q Consensus 371 ~l~~la~~~~~~g~~~~A~~~~~~aL~~-~p~~~~a~~~lg~~~~~~g-~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l 448 (550)
.....+....+.|+.+.|.+.|.+|++. .+.....+...|.+..+.+ +.+.|.+.|+++++. .|.++ .
T Consensus 436 vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-----~p~~~-~---- 505 (679)
T 4e6h_A 436 VYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-----FATDG-E---- 505 (679)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-----HTTCH-H----
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-----CCCch-H----
Confidence 3446666677788999999999999987 5455677777777776665 599999999999999 67666 2
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHHH
Q 008887 449 IVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELL 528 (550)
Q Consensus 449 ~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~ 528 (550)
.+...+......|+.+.|...|++++... ++. ......|......-.+.|+.+.+...++++.+..|+.....
T Consensus 506 --~w~~y~~fe~~~~~~~~AR~lferal~~~-~~~----~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~~~~ 578 (679)
T 4e6h_A 506 --YINKYLDFLIYVNEESQVKSLFESSIDKI-SDS----HLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVNKLE 578 (679)
T ss_dssp --HHHHHHHHHHHHTCHHHHHHHHHHHTTTS-SST----THHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCCHHH
T ss_pred --HHHHHHHHHHhCCCHHHHHHHHHHHHHhc-CCH----HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcHHH
Confidence 34456677778899999999999999986 531 12236788888888899999999999999999999987644
Q ss_pred HHHH
Q 008887 529 EQLE 532 (550)
Q Consensus 529 ~~l~ 532 (550)
.-.+
T Consensus 579 ~f~~ 582 (679)
T 4e6h_A 579 EFTN 582 (679)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4333
No 221
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=97.42 E-value=0.00054 Score=57.77 Aligned_cols=91 Identities=11% Similarity=0.063 Sum_probs=73.7
Q ss_pred cCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHH---HHHHHHHHHHHhhhcCC-CCChhhHHHHHHHHHHHHH
Q 008887 382 KGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEE---AVEYLECAISKLFLAGH-PTEPEAIDLLIVASQWSGV 457 (550)
Q Consensus 382 ~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~e---A~~~~~~al~l~~~~~~-p~~~~~~~~l~~a~~~lg~ 457 (550)
..+...+.+.|++.+..++....+.+.+|+++.+.++..+ ++..++..++. + |... . +..|.+|.
T Consensus 14 ~~~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~-----~~p~~~-R-----d~lY~LAv 82 (126)
T 1nzn_A 14 VEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPK-----GSKEEQ-R-----DYVFYLAV 82 (126)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTT-----SCHHHH-H-----HHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-----CCcchH-H-----HHHHHHHH
Confidence 3345567778888888888899999999999999988876 88888777655 2 2111 1 37889999
Q ss_pred HHHHhcCHHHHHHHHHHHhcCCCCCCc
Q 008887 458 ACIRQEKWEEGIAHLERIGNLKEPEEP 484 (550)
Q Consensus 458 ~~~~~g~~~eA~~~~~~al~~~~p~~~ 484 (550)
.+++.|+|++|+.+++.+++.+ |++.
T Consensus 83 g~yklg~Y~~A~~~~~~lL~~e-P~n~ 108 (126)
T 1nzn_A 83 GNYRLKEYEKALKYVRGLLQTE-PQNN 108 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCH
T ss_pred HHHHhhhHHHHHHHHHHHHHhC-CCCH
Confidence 9999999999999999999998 9876
No 222
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.15 E-value=0.00088 Score=67.38 Aligned_cols=74 Identities=14% Similarity=0.038 Sum_probs=65.2
Q ss_pred hhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHh
Q 008887 397 NKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIG 476 (550)
Q Consensus 397 ~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al 476 (550)
..+|.++.++..++..+...|++++|++.+++|+++ +|. . .++..+|.++...|++++|++.|++|+
T Consensus 271 ~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~L-----n~s---~-----~a~~llG~~~~~~G~~~eA~e~~~~Al 337 (372)
T 3ly7_A 271 PELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDL-----EMS---W-----LNYVLLGKVYEMKGMNREAADAYLTAF 337 (372)
T ss_dssp GGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----CCC---H-----HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc-----CCC---H-----HHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 467999999999999999999999999999999999 653 2 266779999999999999999999999
Q ss_pred cCCCCCCc
Q 008887 477 NLKEPEEP 484 (550)
Q Consensus 477 ~~~~p~~~ 484 (550)
+++ |...
T Consensus 338 rL~-P~~~ 344 (372)
T 3ly7_A 338 NLR-PGAN 344 (372)
T ss_dssp HHS-CSHH
T ss_pred hcC-CCcC
Confidence 997 7543
No 223
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=97.15 E-value=0.0028 Score=54.32 Aligned_cols=77 Identities=13% Similarity=0.078 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHhcCHH---HHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHH
Q 008887 451 ASQWSGVACIRQEKWE---EGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNEL 527 (550)
Q Consensus 451 a~~~lg~~~~~~g~~~---eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~ 527 (550)
+.+++|.++.+..+.+ +++..++..++.. |... -+.++.||..+.++|+|++|+++.+..|+..|++.++
T Consensus 41 t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~-~~~~------RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA 113 (144)
T 1y8m_A 41 SRFNYAWGLIKSTDVNDERLGVKILTDIYKEA-ESRR------RECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV 113 (144)
T ss_dssp HHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHC-CSTH------HHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-ccch------hHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHH
Confidence 6778999998876554 7999999988865 5321 2789999999999999999999999999999999988
Q ss_pred HHHHHhh
Q 008887 528 LEQLENN 534 (550)
Q Consensus 528 ~~~l~~~ 534 (550)
....+.+
T Consensus 114 ~~Lk~~I 120 (144)
T 1y8m_A 114 GALKSMV 120 (144)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7755543
No 224
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=97.13 E-value=0.0022 Score=54.27 Aligned_cols=79 Identities=13% Similarity=0.093 Sum_probs=64.5
Q ss_pred HHHHHHHHHHHhcCH---HHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHH
Q 008887 451 ASQWSGVACIRQEKW---EEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNEL 527 (550)
Q Consensus 451 a~~~lg~~~~~~g~~---~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~ 527 (550)
+.+++|.++.+..+. .+++..++..++.. |.. .-+.++.+|..+.++|+|++|+++.+.++++.|++.++
T Consensus 42 t~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~-~~~------~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA 114 (134)
T 3o48_A 42 SRFNYAWGLIKSTDVNDERLGVKILTDIYKEA-ESR------RRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV 114 (134)
T ss_dssp HHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC-GGG------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHH
T ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-cch------hHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHH
Confidence 677899999887655 47999999988765 422 12899999999999999999999999999999999998
Q ss_pred HHHHHhhHH
Q 008887 528 LEQLENNDE 536 (550)
Q Consensus 528 ~~~l~~~~~ 536 (550)
....+.+.+
T Consensus 115 ~~Lk~~Ie~ 123 (134)
T 3o48_A 115 GALKSMVED 123 (134)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 775555333
No 225
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=97.09 E-value=0.0051 Score=65.20 Aligned_cols=124 Identities=10% Similarity=-0.032 Sum_probs=95.0
Q ss_pred CCChHHHHHHHHhhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHHhc
Q 008887 385 KERPIPLLQLALNKE-PDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQE 463 (550)
Q Consensus 385 ~~~A~~~~~~aL~~~-p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~g 463 (550)
.++|.++|++..+.. .-+..++..+-..|.+.|++++|.+.|++..+.. ..|+ . ..|..+-..|.+.|
T Consensus 86 l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g---~~Pd---~-----~tyn~lI~~~~~~g 154 (501)
T 4g26_A 86 LSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFG---IQPR---L-----RSYGPALFGFCRKG 154 (501)
T ss_dssp HHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CCCC---H-----HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC---CCCc---c-----ceehHHHHHHHHCC
Confidence 456777888776643 2367789999999999999999999999887651 1222 2 16667888899999
Q ss_pred CHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCcHH
Q 008887 464 KWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAH--NPQYNE 526 (550)
Q Consensus 464 ~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~--~p~~~~ 526 (550)
+.++|.+.|++..+..-..+. ..|..+-.+|.+.|+.++|.+.+++..+. .|+...
T Consensus 155 ~~~~A~~l~~~M~~~G~~Pd~-------~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T 212 (501)
T 4g26_A 155 DADKAYEVDAHMVESEVVPEE-------PELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKST 212 (501)
T ss_dssp CHHHHHHHHHHHHHTTCCCCH-------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHH
T ss_pred CHHHHHHHHHHHHhcCCCCCH-------HHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHH
Confidence 999999999998776422233 68889999999999999999999987664 455443
No 226
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=97.07 E-value=0.0031 Score=55.56 Aligned_cols=112 Identities=9% Similarity=-0.026 Sum_probs=78.8
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCC--
Q 008887 403 INALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKE-- 480 (550)
Q Consensus 403 ~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~-- 480 (550)
-.+++.-...+...|.|+.|+-....++..... +++- .....-..+..++|.+++.+|+|..|...|+++++...
T Consensus 20 ~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~--~~~~-~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l 96 (167)
T 3ffl_A 20 HMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNN--NPEL-FSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKAL 96 (167)
T ss_dssp -CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH--STTS-SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcC--Cccc-ccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHH
Confidence 345667778888999999999999988777311 2221 01222234677899999999999999999999876531
Q ss_pred CCCcc---------------ccccchhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008887 481 PEEPK---------------SKAHYYDGLVVLASALCNVGRNAEAEKYLRLA 517 (550)
Q Consensus 481 p~~~~---------------~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~a 517 (550)
++... +.....+..+.+|.||.+.|++++|+..++.+
T Consensus 97 ~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~I 148 (167)
T 3ffl_A 97 SKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGI 148 (167)
T ss_dssp --------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred hcCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence 11110 01123478899999999999999999988753
No 227
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=97.06 E-value=0.014 Score=61.74 Aligned_cols=142 Identities=12% Similarity=0.070 Sum_probs=104.9
Q ss_pred ChHHHH-HHHHHHHHcCCCCChHHHHHHHHhhC-CCChHHHHHHHHHHHHcCC---------HHHHHHHHHHHHHHhhhc
Q 008887 368 TPKELI-ALSVKFLSKGDKERPIPLLQLALNKE-PDNINALILMGQTQLQKGL---------LEEAVEYLECAISKLFLA 436 (550)
Q Consensus 368 ~~~~l~-~la~~~~~~g~~~~A~~~~~~aL~~~-p~~~~a~~~lg~~~~~~g~---------~~eA~~~~~~al~l~~~~ 436 (550)
+|+..+ ..-..+.+.|+.++|+++|++..+.. .-+..+|..+-.++...+. .++|.+.|++..+.
T Consensus 24 spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~---- 99 (501)
T 4g26_A 24 SPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVD---- 99 (501)
T ss_dssp CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHT----
T ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHh----
Confidence 455544 34457788999999999999998864 2356677777777765543 67899999887665
Q ss_pred CCCCChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHH
Q 008887 437 GHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRL 516 (550)
Q Consensus 437 ~~p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~ 516 (550)
.-. |+. .+|..+-.+|.+.|+.++|.+.|++..+..-..+. ..|..+-..|.+.|+.++|.+.+++
T Consensus 100 -G~~-Pd~-----~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~-------~tyn~lI~~~~~~g~~~~A~~l~~~ 165 (501)
T 4g26_A 100 -KVV-PNE-----ATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRL-------RSYGPALFGFCRKGDADKAYEVDAH 165 (501)
T ss_dssp -TCC-CCH-----HHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCH-------HHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred -CCC-CCH-----HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcc-------ceehHHHHHHHHCCCHHHHHHHHHH
Confidence 211 212 16777889999999999999999998765312233 6788888999999999999999999
Q ss_pred HHHc--CCCcHHH
Q 008887 517 AAAH--NPQYNEL 527 (550)
Q Consensus 517 al~~--~p~~~~~ 527 (550)
..+. .|+...+
T Consensus 166 M~~~G~~Pd~~ty 178 (501)
T 4g26_A 166 MVESEVVPEEPEL 178 (501)
T ss_dssp HHHTTCCCCHHHH
T ss_pred HHhcCCCCCHHHH
Confidence 8774 3665443
No 228
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=96.71 E-value=0.034 Score=47.61 Aligned_cols=92 Identities=11% Similarity=0.160 Sum_probs=72.6
Q ss_pred CChHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHH---HHHHHHHHHHHHhhhcCCCCChh
Q 008887 367 LTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLE---EAVEYLECAISKLFLAGHPTEPE 443 (550)
Q Consensus 367 l~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~---eA~~~~~~al~l~~~~~~p~~~~ 443 (550)
++++++-.+-..|...+. + .-..++.+++|+++.+..+.+ +++..++..++. +|....
T Consensus 17 l~~eeL~~lr~qY~~E~~-~-------------~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~-----~~~~~R 77 (144)
T 1y8m_A 17 LYPQQLEILRQQVVSEGG-P-------------TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE-----AESRRR 77 (144)
T ss_dssp CCHHHHHHHHHHHHHTTS-T-------------TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHH-----CCSTHH
T ss_pred CCHHHHHHHHHHHHHhcc-C-------------CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-----Cccchh
Confidence 577777766666666522 1 346788999999999888665 688888888887 676552
Q ss_pred hHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCc
Q 008887 444 AIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEP 484 (550)
Q Consensus 444 ~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~ 484 (550)
+ ..|.+|..+++.|+|++|.++++.+++.+ |++.
T Consensus 78 d------cLYyLAvg~ykl~~Y~~Ar~y~d~lL~~e-P~n~ 111 (144)
T 1y8m_A 78 E------CLYYLTIGCYKLGEYSMAKRYVDTLFEHE-RNNK 111 (144)
T ss_dssp H------HHHHHHHHHHTTTCHHHHHHHHHHHHHTC-CCCH
T ss_pred H------HHHHHHHHHHHhhhHHHHHHHHHHHHhcC-CCcH
Confidence 2 77889999999999999999999999997 8776
No 229
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=96.70 E-value=0.046 Score=57.72 Aligned_cols=71 Identities=8% Similarity=-0.119 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCCcHHHHH
Q 008887 451 ASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVG-RNAEAEKYLRLAAAHNPQYNELLE 529 (550)
Q Consensus 451 a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g-~~~eA~~~l~~al~~~p~~~~~~~ 529 (550)
.|...+....+.+..+.|.+.|+++ +. |.. ....|...|......| +.+.|...|+++++..|+.++.+.
T Consensus 288 lw~~y~~~~~r~~~~~~AR~i~~~A-~~--~~~------~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~ 358 (493)
T 2uy1_A 288 LRINHLNYVLKKRGLELFRKLFIEL-GN--EGV------GPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKE 358 (493)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHH-TT--SCC------CHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHh-hC--CCC------ChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHH
Confidence 5566677777788999999999999 43 422 1245666666655555 699999999999998898877654
Q ss_pred H
Q 008887 530 Q 530 (550)
Q Consensus 530 ~ 530 (550)
.
T Consensus 359 ~ 359 (493)
T 2uy1_A 359 E 359 (493)
T ss_dssp H
T ss_pred H
Confidence 3
No 230
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=96.69 E-value=0.028 Score=59.33 Aligned_cols=129 Identities=11% Similarity=0.018 Sum_probs=95.3
Q ss_pred CChHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHH----------------------------------
Q 008887 367 LTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQT---------------------------------- 412 (550)
Q Consensus 367 l~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~---------------------------------- 412 (550)
.+++..+..+..+...|+.++|...|++|+.. |.+...+...+..
T Consensus 211 ~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw 289 (493)
T 2uy1_A 211 YAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLR 289 (493)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHTTCTHHHHHHHHHTC----------CHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHH
Confidence 35677778888889999999999999999999 9886655544432
Q ss_pred ------HHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHhcCCCCCCcc
Q 008887 413 ------QLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQE-KWEEGIAHLERIGNLKEPEEPK 485 (550)
Q Consensus 413 ------~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~g-~~~eA~~~~~~al~~~~p~~~~ 485 (550)
..+.++.+.|.+.|++| . .|... .. .+...|..-...+ +.+.|...|+++++.. |+++
T Consensus 290 ~~y~~~~~r~~~~~~AR~i~~~A--~-----~~~~~-~~-----v~i~~A~lE~~~~~d~~~ar~ife~al~~~-~~~~- 354 (493)
T 2uy1_A 290 INHLNYVLKKRGLELFRKLFIEL--G-----NEGVG-PH-----VFIYCAFIEYYATGSRATPYNIFSSGLLKH-PDST- 354 (493)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHH--T-----TSCCC-HH-----HHHHHHHHHHHHHCCSHHHHHHHHHHHHHC-TTCH-
T ss_pred HHHHHHHHHcCCHHHHHHHHHHh--h-----CCCCC-hH-----HHHHHHHHHHHHCCChHHHHHHHHHHHHHC-CCCH-
Confidence 22356677788888888 3 33221 11 2333454444445 6999999999999987 7766
Q ss_pred ccccchhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008887 486 SKAHYYDGLVVLASALCNVGRNAEAEKYLRLA 517 (550)
Q Consensus 486 ~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~a 517 (550)
..+..++......|+.++|+..|+++
T Consensus 355 ------~~~~~yid~e~~~~~~~~aR~l~er~ 380 (493)
T 2uy1_A 355 ------LLKEEFFLFLLRIGDEENARALFKRL 380 (493)
T ss_dssp ------HHHHHHHHHHHHHTCHHHHHHHHHHS
T ss_pred ------HHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 66777788888999999999999886
No 231
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=96.62 E-value=0.022 Score=48.16 Aligned_cols=71 Identities=6% Similarity=0.059 Sum_probs=57.3
Q ss_pred ChHHHHHHHHHHHHcCCHH---HHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcC
Q 008887 402 NINALILMGQTQLQKGLLE---EAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNL 478 (550)
Q Consensus 402 ~~~a~~~lg~~~~~~g~~~---eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~ 478 (550)
.+.+.+++|+++.+..+.+ +++..++..++. +|... . +.+|.+|..+++.|+|++|.++.+.+++.
T Consensus 39 s~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~-----~~~~~-R-----d~LYyLAvg~yklgdY~~Ar~y~d~lL~~ 107 (134)
T 3o48_A 39 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE-----AESRR-R-----ECLYYLTIGCYKLGEYSMAKRYVDTLFEH 107 (134)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH-----CGGGH-H-----HHHHHHHHHHHHHTCHHHHHHHHHHHHTT
T ss_pred ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-----Ccchh-H-----HHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 5678888888888887664 688888888776 55333 2 37788999999999999999999999999
Q ss_pred CCCCCc
Q 008887 479 KEPEEP 484 (550)
Q Consensus 479 ~~p~~~ 484 (550)
+ |++.
T Consensus 108 e-P~N~ 112 (134)
T 3o48_A 108 E-RNNK 112 (134)
T ss_dssp C-TTCH
T ss_pred C-CCCH
Confidence 7 8776
No 232
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=95.97 E-value=0.049 Score=51.86 Aligned_cols=129 Identities=12% Similarity=0.009 Sum_probs=88.4
Q ss_pred HHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHH
Q 008887 377 VKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSG 456 (550)
Q Consensus 377 ~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg 456 (550)
...++.|++++|++..+..++.+|.|......+.+.++-.|+|+.|.+.++-+.++ +|.... .+
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l-----~p~~~~-----------~a 68 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKL-----FPEYLP-----------GA 68 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----CGGGHH-----------HH
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-----CchhhH-----------HH
Confidence 35678899999999999999999999999999999999999999999999999999 554431 22
Q ss_pred HHHHHhcCHHHHHHHHHHHhcCC-CCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcH
Q 008887 457 VACIRQEKWEEGIAHLERIGNLK-EPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYN 525 (550)
Q Consensus 457 ~~~~~~g~~~eA~~~~~~al~~~-~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~ 525 (550)
..|... =.|...=++++.-. .|....... .......-+......|+.++|.+.-.++++..|...
T Consensus 69 ~~yr~l---I~aE~~R~~vfaG~~~P~~~g~~~-~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~~ 134 (273)
T 1zbp_A 69 SQLRHL---VKAAQARKDFAQGAATAKVLGENE-ELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKG 134 (273)
T ss_dssp HHHHHH---HHHHHHHHHHTTSCCCEECCCSCH-HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCC
T ss_pred HHHHHH---HHHHHHHHHHHcCCCCCCCCCCCH-HHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCcccC
Confidence 222211 11111112223221 133322211 123344445556678999999999999998876543
No 233
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.87 E-value=0.13 Score=45.88 Aligned_cols=108 Identities=9% Similarity=-0.046 Sum_probs=72.8
Q ss_pred ChHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHH
Q 008887 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDL 447 (550)
Q Consensus 368 ~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~ 447 (550)
+++.-+++| ...|+++.|.+..++. ++...|..+|...+..|+++-|+.+|+++-.. .
T Consensus 7 D~~~rF~LA---L~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~-----------~--- 64 (177)
T 3mkq_B 7 DPHIRFDLA---LEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQHSF-----------D--- 64 (177)
T ss_dssp CHHHHHHHH---HHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTCH-----------H---
T ss_pred ChHHHHHHH---HhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHhCCH-----------H---
Confidence 667667765 7889999999988765 67889999999999999999999999887444 1
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHH
Q 008887 448 LIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRL 516 (550)
Q Consensus 448 l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~ 516 (550)
.+...|.-.|+.++=.+.-+.+...+ . +..-..++..+|+.+++++.|.+
T Consensus 65 ------~L~~Ly~~tg~~e~L~kla~iA~~~g-~------------~n~af~~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 65 ------KLSFLYLVTGDVNKLSKMQNIAQTRE-D------------FGSMLLNTFYNNSTKERSSIFAE 114 (177)
T ss_dssp ------HHHHHHHHHTCHHHHHHHHHHHHHTT-C------------HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred ------HHHHHHHHhCCHHHHHHHHHHHHHCc-c------------HHHHHHHHHHcCCHHHHHHHHHH
Confidence 24445555666655544444444332 1 22223445556666666665543
No 234
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=95.84 E-value=0.19 Score=44.07 Aligned_cols=132 Identities=15% Similarity=0.083 Sum_probs=89.3
Q ss_pred HHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHH
Q 008887 380 LSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVAC 459 (550)
Q Consensus 380 ~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~ 459 (550)
++-.+|+.++=+- .. +.|..++-...++..+...|+|..|+-.+.+ + +. . .+.+.-+.||
T Consensus 13 ~kY~dYdt~~fLs-a~--L~~~~~eY~lL~~I~LyyngEY~R~Lf~L~~---l--------NT-~-----Ts~YYk~LCy 72 (242)
T 3kae_A 13 IRYRDYETAIFLA-AC--LLPCKPEYRMLMSIVLYLNGEYTRALFHLHK---L--------NT-C-----TSKYYESLCY 72 (242)
T ss_dssp HHTTCHHHHHHHH-HH--HC----CTHHHHHHHHHHTTCHHHHHHHHHT---C--------CB-H-----HHHHHHHHHH
T ss_pred hhcccccHHHHHH-HH--HccCChHHHhhhhhhhhhcchHhHHHHHHHh---c--------ch-H-----HHHHHHHHHH
Confidence 3444565543221 11 3455556677889999999999988765422 1 22 1 1566788999
Q ss_pred HHhcCHHHHHHHHHHHhcCCCCCCcc----------ccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHHHH
Q 008887 460 IRQEKWEEGIAHLERIGNLKEPEEPK----------SKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLE 529 (550)
Q Consensus 460 ~~~g~~~eA~~~~~~al~~~~p~~~~----------~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~ 529 (550)
.+.++|.+|+..+++.++-.-.+|+. +..+....+..+|.++.+.|+.+||+.++.......+-.....+
T Consensus 73 ~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~lf~~vEn 152 (242)
T 3kae_A 73 KKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGKSFLFSPVEN 152 (242)
T ss_dssp HHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCccccchHHH
Confidence 99999999999999999432111211 11223356778999999999999999999999998887776664
Q ss_pred HH
Q 008887 530 QL 531 (550)
Q Consensus 530 ~l 531 (550)
.+
T Consensus 153 li 154 (242)
T 3kae_A 153 LL 154 (242)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 235
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=95.37 E-value=0.11 Score=52.99 Aligned_cols=113 Identities=19% Similarity=0.028 Sum_probs=73.6
Q ss_pred HHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHH-HHHHHHHHHhhhcCCCCChhhHHHHHHH
Q 008887 373 IALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAV-EYLECAISKLFLAGHPTEPEAIDLLIVA 451 (550)
Q Consensus 373 ~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~-~~~~~al~l~~~~~~p~~~~~~~~l~~a 451 (550)
...|......|+.++|.+.+++|+.+..+..-.-. . ...|-.+. ..+++.. + .+
T Consensus 119 ~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~--~-----~~~w~~~~r~~l~~~~-~-----------------~a 173 (388)
T 2ff4_A 119 KTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDL--R-----DFQFVEPFATALVEDK-V-----------------LA 173 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGG--T-----TSTTHHHHHHHHHHHH-H-----------------HH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCC--C-----chhHHHHHHHHHHHHH-H-----------------HH
Confidence 35555666778999999999999998754321100 0 12222221 1121111 1 13
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008887 452 SQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAA 518 (550)
Q Consensus 452 ~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al 518 (550)
...++.++...|++++++..+++++..+ |-+. .++..+-.+|...|+..+|.+.|+++-
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E-------~~~~~lm~al~~~Gr~~~Al~~y~~~r 232 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEH-PYRE-------PLWTQLITAYYLSDRQSDALGAYRRVK 232 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCH-------HHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3346777778888888888888888887 7666 788888888888888888888887653
No 236
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=94.87 E-value=0.18 Score=51.17 Aligned_cols=105 Identities=10% Similarity=-0.083 Sum_probs=78.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCcccc
Q 008887 408 LMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSK 487 (550)
Q Consensus 408 ~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~ 487 (550)
.+|..|+..|+|.+|.+.+.+..+-.. ..+ ....+.+.+..-...|...|++.++.+.+.++.... ..-..+.
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~---~~d---d~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~-~ai~~~p 176 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELK---KLD---DKNLLVEVQLLESKTYHALSNLPKARAALTSARTTA-NAIYCPP 176 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHT---TSS---CTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHSCCCH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHh---ccc---cchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhh-ccCCCCH
Confidence 689999999999999999999887631 111 124455566677888999999999999999987653 1100111
Q ss_pred ccchhHHHHHHHHHH-hcCCHHHHHHHHHHHHH
Q 008887 488 AHYYDGLVVLASALC-NVGRNAEAEKYLRLAAA 519 (550)
Q Consensus 488 ~~~~~~~~~La~~~~-~~g~~~eA~~~l~~al~ 519 (550)
.-.+.....-|..+. ..++|.+|..+|-++++
T Consensus 177 ~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~ 209 (394)
T 3txn_A 177 KVQGALDLQSGILHAADERDFKTAFSYFYEAFE 209 (394)
T ss_dssp HHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHh
Confidence 224466777788888 89999999999998874
No 237
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=94.59 E-value=1.1 Score=39.44 Aligned_cols=139 Identities=18% Similarity=0.181 Sum_probs=95.2
Q ss_pred HHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh------------hcCCCCC
Q 008887 374 ALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLF------------LAGHPTE 441 (550)
Q Consensus 374 ~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~------------~~~~p~~ 441 (550)
-++..++..|+|.+++-++.. -+...+.+....+|.+.+||..|+.+++..++--. --.+|.+
T Consensus 38 L~~I~LyyngEY~R~Lf~L~~-----lNT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~D 112 (242)
T 3kae_A 38 LMSIVLYLNGEYTRALFHLHK-----LNTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGD 112 (242)
T ss_dssp HHHHHHHHTTCHHHHHHHHHT-----CCBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTC
T ss_pred hhhhhhhhcchHhHHHHHHHh-----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccch
Confidence 466678888988887766543 45678889999999999999999999999983310 0113344
Q ss_pred hhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCC--------------Ccccccc------------------
Q 008887 442 PEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPE--------------EPKSKAH------------------ 489 (550)
Q Consensus 442 ~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~--------------~~~~~~~------------------ 489 (550)
.+. .+.-+|..+.+.|+.+||+.++....... +- ...++.+
T Consensus 113 kEf------Fy~l~a~lltq~g~r~EaI~y~~~Sf~~~-~lf~~vEnliyeN~vp~~~d~~~i~~~~~~~i~~~y~~d~~ 185 (242)
T 3kae_A 113 EEF------FESLLGDLCTLSGYREEGIGHYVRSFGKS-FLFSPVENLLLENKVPQKRDKENVRQTGRRGIEEEYVSDSI 185 (242)
T ss_dssp HHH------HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHHHHHTTCCCCCC-----------CHHHHHHHHHH
T ss_pred HHH------HHHHHHHHHHHhcCHHHhhhHhhhhcCCc-cccchHHHHHhhcCCCcccchHHHHhhhhccchhhhhhhHH
Confidence 322 45568999999999999999988655332 11 0111111
Q ss_pred ---------------------chhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCc
Q 008887 490 ---------------------YYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQY 524 (550)
Q Consensus 490 ---------------------~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~ 524 (550)
-.......|.-|..+|..|+..++|..+-+.+|.+
T Consensus 186 ~lHe~~s~~~ikkY~n~iPGiGSY~va~aa~~yf~lg~~d~s~~lf~~lR~kDP~F 241 (242)
T 3kae_A 186 EFHESLSPSLVKKYMEHVPGIGSYFISNAARRYFNLGMNDKSKACFELVRRKDPMF 241 (242)
T ss_dssp HHHHHCCHHHHHHHHTSTTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTT
T ss_pred HHHHhccHHHHHHHHHhCCCchhHHHHHHHHHHHhcccchhHHHHHHHHHhcCCCc
Confidence 01122345667888899999999888888888754
No 238
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=94.54 E-value=0.47 Score=40.94 Aligned_cols=104 Identities=11% Similarity=0.050 Sum_probs=81.5
Q ss_pred CCChHHHHHHHHHHHHcCCC------CChHHHHHHHHhhCCC--------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008887 366 NLTPKELIALSVKFLSKGDK------ERPIPLLQLALNKEPD--------NINALILMGQTQLQKGLLEEAVEYLECAIS 431 (550)
Q Consensus 366 ~l~~~~l~~la~~~~~~g~~------~~A~~~~~~aL~~~p~--------~~~a~~~lg~~~~~~g~~~eA~~~~~~al~ 431 (550)
..+++..+......-..|+. ++-.+.|++|+..-|- ....|...|.. ...+|.++|.+.|+.++.
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a~~ 88 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQMARA 88 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHHHH
Confidence 35888898888888888998 7788899999885543 34455566644 566999999999999998
Q ss_pred HhhhcCCCCChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCC
Q 008887 432 KLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEE 483 (550)
Q Consensus 432 l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~ 483 (550)
+ +.... ..|...|.--.++|+.++|.+.+.+++... |..
T Consensus 89 ~-----hKkFA-------Kiwi~~AqFEiRqgnl~kARkILg~AiG~~-~k~ 127 (161)
T 4h7y_A 89 N-----CKKFA-------FVHISFAQFELSQGNVKKSKQLLQKAVERG-AVP 127 (161)
T ss_dssp H-----CTTBH-------HHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CBC
T ss_pred H-----hHHHH-------HHHHHHHHHHHHcccHHHHHHHHHHHhccC-CCc
Confidence 7 33332 367778888889999999999999999997 644
No 239
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=93.99 E-value=0.21 Score=55.09 Aligned_cols=127 Identities=9% Similarity=0.015 Sum_probs=83.5
Q ss_pred cCC-CCChHHHHHHHHhhCCCChHHHHHHHHHHH--H-cCCHHHHHHHHHHHHHHh---hhcCCCCChhhHH---HHHHH
Q 008887 382 KGD-KERPIPLLQLALNKEPDNINALILMGQTQL--Q-KGLLEEAVEYLECAISKL---FLAGHPTEPEAID---LLIVA 451 (550)
Q Consensus 382 ~g~-~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~--~-~g~~~eA~~~~~~al~l~---~~~~~p~~~~~~~---~l~~a 451 (550)
.|+ ++.|++++++..+.+|.... ++..+.+.. + ..+--+|++.+.++++.. .....+.+..... .....
T Consensus 261 t~~~~~~a~~~le~L~~~~p~~~~-~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~L 339 (754)
T 4gns_B 261 TPSLVDFTIDYLKGLTKKDPIHDI-YYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARLMNCMSDL 339 (754)
T ss_dssp CGGGHHHHHHHHHHHHHHCGGGHH-HHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhhCCchhH-HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccccCcchHH
Confidence 445 47799999999999887643 333333322 1 223446777777776421 0011222221110 00112
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008887 452 SQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLA 517 (550)
Q Consensus 452 ~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~a 517 (550)
...-+.-+...|+++-|+++.++++... |.+- ..|+.|+.||..+|+++.|.-.+..+
T Consensus 340 L~~Qa~FLl~K~~~elAL~~Ak~AV~~a-PseF-------~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 340 LNIQTNFLLNRGDYELALGVSNTSTELA-LDSF-------ESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCH-------HHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHHHHHhccCcHHHHHHHHHHHHhcC-chhh-------HHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 2335666778999999999999999997 8666 99999999999999999999776654
No 240
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.99 E-value=0.27 Score=50.73 Aligned_cols=103 Identities=17% Similarity=0.134 Sum_probs=80.3
Q ss_pred HHHHHHHHHHHcCCCCChHHHHHHHHhhCC---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHH
Q 008887 371 ELIALSVKFLSKGDKERPIPLLQLALNKEP---DNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDL 447 (550)
Q Consensus 371 ~l~~la~~~~~~g~~~~A~~~~~~aL~~~p---~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~ 447 (550)
....+|..|+..|++++|.+.|.++..... .-.+.+.....++...++|..+..+++++-...... .++..
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~---~d~~~--- 206 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKG---GDWER--- 206 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTC---CCTHH---
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcC---CCHHH---
Confidence 445899999999999999999999987532 346788889999999999999999999998774221 22211
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCC
Q 008887 448 LIVASQWSGVACIRQEKWEEGIAHLERIGNLK 479 (550)
Q Consensus 448 l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~ 479 (550)
........|..+...++|.+|..+|-.+....
T Consensus 207 ~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t~ 238 (429)
T 4b4t_R 207 RNRYKTYYGIHCLAVRNFKEAAKLLVDSLATF 238 (429)
T ss_dssp HHHHHHHHHHGGGGTSCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHhChHHHHHHHHHHHhccC
Confidence 11234456788889999999999999887663
No 241
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.87 E-value=0.064 Score=55.49 Aligned_cols=109 Identities=17% Similarity=-0.029 Sum_probs=81.7
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCC
Q 008887 402 NINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEP 481 (550)
Q Consensus 402 ~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p 481 (550)
-..++..+|..|...|++++|.+.|.++... +..+.+. . ..+.....++...+++..+..++.++-... .
T Consensus 130 ~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~---~~~~~~k--i----d~~l~~irl~l~~~d~~~~~~~~~ka~~~~-~ 199 (429)
T 4b4t_R 130 QAQAWINLGEYYAQIGDKDNAEKTLGKSLSK---AISTGAK--I----DVMLTIARLGFFYNDQLYVKEKLEAVNSMI-E 199 (429)
T ss_dssp CSSCCHHHHHHHHHHCCCTTHHHHHHHHHHH---HTCCCSH--H----HHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-T
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---cCChHHH--H----HHHHHHHHHHHHhccHHHHHHHHHHHHHhh-h
Confidence 4567889999999999999999999998877 2222222 2 255567888889999999999999987653 2
Q ss_pred CCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 008887 482 EEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHN 521 (550)
Q Consensus 482 ~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~ 521 (550)
...+...........|..+...++|.+|...|..++...
T Consensus 200 -~~~d~~~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t~ 238 (429)
T 4b4t_R 200 -KGGDWERRNRYKTYYGIHCLAVRNFKEAAKLLVDSLATF 238 (429)
T ss_dssp -TCCCTHHHHHHHHHHHHGGGGTSCHHHHHHHHHHHHHHS
T ss_pred -cCCCHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHhccC
Confidence 222223334566677888889999999999998876543
No 242
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=93.05 E-value=0.25 Score=54.74 Aligned_cols=46 Identities=22% Similarity=0.171 Sum_probs=36.7
Q ss_pred HHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008887 379 FLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECA 429 (550)
Q Consensus 379 ~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~a 429 (550)
.+..|++++|.+..+ .-++...|..+|..+.+.|+++.|+++|.++
T Consensus 662 ~l~~~~~~~A~~~~~-----~~~~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 662 ALKVGQLTLARDLLT-----DESAEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHHTCHHHHHHHHT-----TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhhcCCHHHHHHHHH-----hhCcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 456677777766543 3467889999999999999999999999886
No 243
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=92.72 E-value=0.92 Score=51.35 Aligned_cols=54 Identities=13% Similarity=-0.026 Sum_probs=23.1
Q ss_pred HHHHHcCCCCChHHHHHHHHhh----CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008887 377 VKFLSKGDKERPIPLLQLALNK----EPDNINALILMGQTQLQKGLLEEAVEYLECAI 430 (550)
Q Consensus 377 ~~~~~~g~~~~A~~~~~~aL~~----~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al 430 (550)
..|.+.|+.++|.++|++.-+. -.-+...|+.+-..|.+.|+.++|.+.|++..
T Consensus 135 dglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~ 192 (1134)
T 3spa_A 135 KCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVK 192 (1134)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 3444444444444444332211 12234444444444444444444444444443
No 244
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=92.60 E-value=0.69 Score=48.49 Aligned_cols=62 Identities=15% Similarity=0.043 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 008887 371 ELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISK 432 (550)
Q Consensus 371 ~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l 432 (550)
-+..+|....+..+++.|..+|++|..+.|++...++.+|.++...|+.-+|+-+|-+++..
T Consensus 154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~ 215 (497)
T 1ya0_A 154 CLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAV 215 (497)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSS
T ss_pred HHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhc
Confidence 44589999999999999999999999999999999999999999999999999999999866
No 245
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=92.48 E-value=0.53 Score=49.39 Aligned_cols=80 Identities=11% Similarity=0.022 Sum_probs=71.7
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHHHHH
Q 008887 451 ASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQ 530 (550)
Q Consensus 451 a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~ 530 (550)
...++|........++.|..+|++|.... |+.+ ..+..||.++...|+.-+|.-+|.+++....-++.+..+
T Consensus 154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~-P~~G-------~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~n 225 (497)
T 1ya0_A 154 CLVHLGDIARYRNQTSQAESYYRHAAQLV-PSNG-------QPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTN 225 (497)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTBS-------HHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHHHHHHHhC-CCCC-------chHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHH
Confidence 44568999999999999999999999998 9888 999999999999999999999999999988778999998
Q ss_pred HHhhHHHH
Q 008887 531 LENNDEEF 538 (550)
Q Consensus 531 l~~~~~~~ 538 (550)
+....+..
T Consensus 226 L~~~f~~~ 233 (497)
T 1ya0_A 226 LQKALSKA 233 (497)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88755544
No 246
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.44 E-value=0.66 Score=48.02 Aligned_cols=109 Identities=13% Similarity=0.028 Sum_probs=74.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCc
Q 008887 405 ALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEP 484 (550)
Q Consensus 405 a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~ 484 (550)
....|+.+|...|++.+|.+.+.....-- ....+ .....+.+......+...+++.+|...+.++.... -...
T Consensus 139 l~~~La~i~e~~g~~~eA~~iL~~l~~Et---~~~~~---~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~-~~~~ 211 (445)
T 4b4t_P 139 VTKDLVEIKKEEGKIDEAADILCELQVET---YGSME---MSEKIQFILEQMELSILKGDYSQATVLSRKILKKT-FKNP 211 (445)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHH---CSSSC---HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-HHSS
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHH---Hhccc---HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhh-cccC
Confidence 34568888888888888888887765431 11111 12233455667888999999999999999864321 1111
Q ss_pred cccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 008887 485 KSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAH 520 (550)
Q Consensus 485 ~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~ 520 (550)
....-....+...|..+...++|.+|-.+|.++...
T Consensus 212 ~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~ 247 (445)
T 4b4t_P 212 KYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQT 247 (445)
T ss_dssp CCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 111223467788899999999999999999988763
No 247
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=92.34 E-value=0.38 Score=48.83 Aligned_cols=125 Identities=13% Similarity=0.029 Sum_probs=86.5
Q ss_pred HHHHHHHHcCCCCChHHHHHHHHhhC--CC----ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHH
Q 008887 374 ALSVKFLSKGDKERPIPLLQLALNKE--PD----NINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDL 447 (550)
Q Consensus 374 ~la~~~~~~g~~~~A~~~~~~aL~~~--p~----~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~ 447 (550)
.+|..|+..|+|.+|.+.+.+.++.- .+ -.+.+..-..+|...+++.++...+.+|....-.. +.+|..
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai--~~~p~i--- 178 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAI--YCPPKV--- 178 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS--CCCHHH---
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccC--CCCHHH---
Confidence 78999999999999999999988832 12 24567778889999999999999999998774111 123311
Q ss_pred HHHHHHHHHHHHH-HhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCC
Q 008887 448 LIVASQWSGVACI-RQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGR 506 (550)
Q Consensus 448 l~~a~~~lg~~~~-~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~ 506 (550)
.......-|..+. ..++|++|..+|-++.+.. .... . .....+...++.|-...++
T Consensus 179 ~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f-~~~~-~-~~~~~~lkYlvL~aLl~~~ 235 (394)
T 3txn_A 179 QGALDLQSGILHAADERDFKTAFSYFYEAFEGF-DSVD-S-VKALTSLKYMLLCKIMLGQ 235 (394)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHH-TTTC-H-HHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhhHHHHHhccCHHHHHHHHHHHHhcc-cccc-c-HHHHHHHHHHHHHHHHcCC
Confidence 2224446788899 8999999999999987653 2211 1 1122344455555555555
No 248
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.14 E-value=0.28 Score=51.25 Aligned_cols=139 Identities=7% Similarity=-0.021 Sum_probs=63.3
Q ss_pred HHHHcCCCCChHHHHHHHHh-----------hCCCChHHHHHHHHHHHHcCCHHHH----------HHHHHHHHHHhhhc
Q 008887 378 KFLSKGDKERPIPLLQLALN-----------KEPDNINALILMGQTQLQKGLLEEA----------VEYLECAISKLFLA 436 (550)
Q Consensus 378 ~~~~~g~~~~A~~~~~~aL~-----------~~p~~~~a~~~lg~~~~~~g~~~eA----------~~~~~~al~l~~~~ 436 (550)
.++..+++++|.++-...+. .|.-.+.+|+.++.++...|+..+. ...+-.+++.+
T Consensus 145 ~L~d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta--- 221 (523)
T 4b4t_S 145 FLWDSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIA--- 221 (523)
T ss_dssp ----------------------------------------------------------CHHHHHHHHTHHHHHHHHC---
T ss_pred HHhccccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHH---
Confidence 45667888888887765541 2344567788888888888876653 22333444442
Q ss_pred CCCCChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHH
Q 008887 437 GHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRL 516 (550)
Q Consensus 437 ~~p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~ 516 (550)
...+....+ ...++.+-+.|...+.|++|..+..++. . |............++.+|+++.-.++|.+|.+++..
T Consensus 222 -~lr~D~~~q--a~l~nllLRnYL~~~~y~qA~~lvsk~~--f-P~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~ 295 (523)
T 4b4t_S 222 -SLKHDNETK--AMLINLILRDFLNNGEVDSASDFISKLE--Y-PHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIA 295 (523)
T ss_dssp -CSCSSSCHH--HHHHHHHHHHHHHSSCSTTHHHHHHHHC--S-CTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred -hcccCcchh--HHHHHHHHHHHHccCcHHHHHHHHhcCc--C-CcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 222221111 1245567888999999999999999975 2 433222223457788999999999999999999999
Q ss_pred HHHcCCCcH
Q 008887 517 AAAHNPQYN 525 (550)
Q Consensus 517 al~~~p~~~ 525 (550)
+++..|.+.
T Consensus 296 A~rkap~~~ 304 (523)
T 4b4t_S 296 AIRKAPHNS 304 (523)
T ss_dssp HTSSCSCSS
T ss_pred HHHhCCcch
Confidence 999887653
No 249
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=91.67 E-value=0.58 Score=54.62 Aligned_cols=135 Identities=12% Similarity=0.028 Sum_probs=92.0
Q ss_pred HHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCCh--hhH------
Q 008887 374 ALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEP--EAI------ 445 (550)
Q Consensus 374 ~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~--~~~------ 445 (550)
.+...+...++++-+.+ .+...+.++...+.+|.++...|++++|.++|+++..-. ...+.... ...
T Consensus 817 ~l~~~l~~~~~~~~~~~----l~~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~-~~~~~l~~~~~~~~~~~~~ 891 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQ----LIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVL-YSHTSQFAVLREFQEIAEK 891 (1139)
T ss_dssp HHHHHHHHHSCTTHHHH----HHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSC-TTCCCSCSSHHHHHHHHHT
T ss_pred HHHHHHHHhhhHHHHHH----HhhhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhh-cccchhhhhhccccccccc
Confidence 45556677777765443 345567888888999999999999999999998874321 00000000 000
Q ss_pred ----HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHH
Q 008887 446 ----DLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRL 516 (550)
Q Consensus 446 ----~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~ 516 (550)
..+...|+.+...+.+.|.++.+++..+.|++...+++. .-....|..+-..+.+.|+|++|...+..
T Consensus 892 ~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~---~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~ 963 (1139)
T 4fhn_B 892 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDE---DLSIAITHETLKTACAAGKFDAAHVALMV 963 (1139)
T ss_dssp TTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCH---HHHHHHHHHHHHHHHHHCCSGGGGHHHHH
T ss_pred ccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCCh---hhHHHHHHHHHHHHHhhCCHHHHHHHHHh
Confidence 001125666778889999999999999999987523332 11224678888999999999999877754
No 250
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.72 E-value=0.98 Score=47.21 Aligned_cols=110 Identities=9% Similarity=0.039 Sum_probs=63.2
Q ss_pred CChHHHHHHHHHHHHcCCCCCh----------HHHHHHHHh-----hCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008887 367 LTPKELIALSVKFLSKGDKERP----------IPLLQLALN-----KEPD-NINALILMGQTQLQKGLLEEAVEYLECAI 430 (550)
Q Consensus 367 l~~~~l~~la~~~~~~g~~~~A----------~~~~~~aL~-----~~p~-~~~a~~~lg~~~~~~g~~~eA~~~~~~al 430 (550)
+.++.++..+..+-..|+..+. ...+..+++ .|.+ ....++.+-..|.+.+.+++|..+..++.
T Consensus 179 l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~lr~D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~ 258 (523)
T 4b4t_S 179 INAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIASLKHDNETKAMLINLILRDFLNNGEVDSASDFISKLE 258 (523)
T ss_dssp ------------------------CHHHHHHHHTHHHHHHHHCCSCSSSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhcccCcchhHHHHHHHHHHHHccCcHHHHHHHHhcCc
Confidence 4555566666666666665542 223333333 2222 35667889999999999999999988873
Q ss_pred HHhhhcCCCCChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCc
Q 008887 431 SKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEP 484 (550)
Q Consensus 431 ~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~ 484 (550)
.|............+|++|+++..+++|.+|.+++..|++.. |.+.
T Consensus 259 -------fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rka-p~~~ 304 (523)
T 4b4t_S 259 -------YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKA-PHNS 304 (523)
T ss_dssp -------SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSC-SCSS
T ss_pred -------CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-Ccch
Confidence 454321223334578899999999999999999999999987 6543
No 251
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=90.39 E-value=0.82 Score=43.47 Aligned_cols=67 Identities=16% Similarity=0.192 Sum_probs=59.8
Q ss_pred HHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHHHHHHH
Q 008887 458 ACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQLE 532 (550)
Q Consensus 458 ~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~l~ 532 (550)
.+.+.|+.++|++.++..++.+ |.|. .....|.+.++-.|++++|.+.++.+.+++|+.......+.
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~-P~da-------~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr 72 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKAS-PKDA-------SLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLR 72 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTC-TTCH-------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-CcCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHH
Confidence 3567899999999999999998 9998 89999999999999999999999999999999987554443
No 252
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.68 E-value=1.3 Score=45.67 Aligned_cols=101 Identities=14% Similarity=0.062 Sum_probs=77.1
Q ss_pred HHHHHHHHHcCCCCChHHHHHHHHhhC--CC----ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHH
Q 008887 373 IALSVKFLSKGDKERPIPLLQLALNKE--PD----NINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAID 446 (550)
Q Consensus 373 ~~la~~~~~~g~~~~A~~~~~~aL~~~--p~----~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~ 446 (550)
..+|..+...|++.+|.+.+....... .. -.+.+.....+|...+++.+|...++++-..... .+.++ +
T Consensus 141 ~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~--~~~~~---~ 215 (445)
T 4b4t_P 141 KDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFK--NPKYE---S 215 (445)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH--SSCCH---H
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcc--cCCcH---H
Confidence 378999999999999999999986521 11 2567788899999999999999999997543211 22222 2
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcC
Q 008887 447 LLIVASQWSGVACIRQEKWEEGIAHLERIGNL 478 (550)
Q Consensus 447 ~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~ 478 (550)
.....+...|..+...++|.+|..+|.++.+.
T Consensus 216 lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~ 247 (445)
T 4b4t_P 216 LKLEYYNLLVKISLHKREYLEVAQYLQEIYQT 247 (445)
T ss_dssp HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 22335667899999999999999999988765
No 253
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=89.45 E-value=0.46 Score=52.35 Aligned_cols=59 Identities=15% Similarity=0.164 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008887 371 ELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECA 429 (550)
Q Consensus 371 ~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~a 429 (550)
-+...+..++..|+++-|+++.++|....|.+-.+|+.|+.+|...|||+.|+-.+.-+
T Consensus 339 LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 339 LLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 34478888999999999999999999999999999999999999999999999887655
No 254
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=88.99 E-value=1.8 Score=46.65 Aligned_cols=128 Identities=16% Similarity=0.114 Sum_probs=80.8
Q ss_pred HHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHH----HHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHH
Q 008887 371 ELIALSVKFLSKGDKERPIPLLQLALNKEPDNINA----LILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAID 446 (550)
Q Consensus 371 ~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a----~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~ 446 (550)
.++..+...+...+.+.|...+.+.-+...-+... +..+|.-+...+...++...+.+.... ..+. .
T Consensus 216 ~~~~~~~~rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~------~~~~-~-- 286 (618)
T 1qsa_A 216 QMAAVAFASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR------SQST-S-- 286 (618)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT------CCCH-H--
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc------CCCh-H--
Confidence 44566666777778888988888776543333222 223333334445355677777765433 2222 1
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008887 447 LLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAA 519 (550)
Q Consensus 447 ~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~ 519 (550)
+.+ +++...++.|+++.|..+|++.-... .. .....+.+|+++.+.|+.++|...|+++.+
T Consensus 287 -~~e---~~~r~Alr~~d~~~a~~~~~~l~~~~-~~-------~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 287 -LIE---RRVRMALGTGDRRGLNTWLARLPMEA-KE-------KDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp -HHH---HHHHHHHHHTCHHHHHHHHHHSCTTG-GG-------SHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred -HHH---HHHHHHHHCCCHHHHHHHHHHccccc-cc-------cHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 111 23334456799999999998754321 22 237789999999999999999999998875
No 255
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=88.28 E-value=0.93 Score=45.97 Aligned_cols=62 Identities=10% Similarity=-0.047 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 008887 371 ELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISK 432 (550)
Q Consensus 371 ~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l 432 (550)
.+..++..+...|++++|+..+++++..+|-+-.++..+-.++...|+..+|++.|+++-+.
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~ 234 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTT 234 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 33467788899999999999999999999999999999999999999999999999988765
No 256
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=87.70 E-value=2.8 Score=46.13 Aligned_cols=28 Identities=18% Similarity=0.015 Sum_probs=24.6
Q ss_pred ChHHHHHHHHHHHHcCCCCChHHHHHHH
Q 008887 368 TPKELIALSVKFLSKGDKERPIPLLQLA 395 (550)
Q Consensus 368 ~~~~l~~la~~~~~~g~~~~A~~~~~~a 395 (550)
++....++|..+...|+++.|+.+|.++
T Consensus 680 ~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 680 AEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 4556669999999999999999999987
No 257
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=85.32 E-value=5.5 Score=45.21 Aligned_cols=62 Identities=10% Similarity=0.016 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHcCCCCChHHHHHHHHhhC-CCChHHHHHHHHHHHHcCC-HHHHHHHHHHHHHH
Q 008887 371 ELIALSVKFLSKGDKERPIPLLQLALNKE-PDNINALILMGQTQLQKGL-LEEAVEYLECAISK 432 (550)
Q Consensus 371 ~l~~la~~~~~~g~~~~A~~~~~~aL~~~-p~~~~a~~~lg~~~~~~g~-~~eA~~~~~~al~l 432 (550)
....+-..+.+.|+.++|.++|++..+.. .-|...|+.+-..+.+.|+ .++|.+.+++..+.
T Consensus 167 TYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI~glcK~G~~~e~A~~Ll~EM~~k 230 (1134)
T 3spa_A 167 MYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQE 230 (1134)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Confidence 33355567888999999999999987754 2356778888888888887 47888999888777
No 258
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=83.43 E-value=3.6 Score=46.85 Aligned_cols=124 Identities=11% Similarity=0.008 Sum_probs=79.5
Q ss_pred HHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCCh-----------
Q 008887 374 ALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEP----------- 442 (550)
Q Consensus 374 ~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~----------- 442 (550)
.+...++..|+++- ..+.+.--|.++...|.+|.+|...|++++|.++|++|-.-. ..++....
T Consensus 815 ~l~~~L~~~~~~~~----a~eL~~~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl-~~~~~~~~~~~~~~~ll~~ 889 (950)
T 4gq2_M 815 ELVEKLFLFKQYNA----CMQLIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVL-YSHTSQFAVLREFQEIAEK 889 (950)
T ss_dssp HHHHHHHHTTCHHH----HHHHGGGCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTT-CSSCCSCGGGHHHHHHHHH
T ss_pred HHHHHHHHhcHHHH----HHHHHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhc-ccCcccccchhhhhhccCc
Confidence 45666666666543 344556678888888999999999999999999999874221 00000000
Q ss_pred -hhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcC
Q 008887 443 -EAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVG 505 (550)
Q Consensus 443 -~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g 505 (550)
+....+...|......+.+.+.++.+++..+.|++.-.++++. ...+.|..+-+++...|
T Consensus 890 ~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~---l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 890 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDED---LSIAITHETLKTACAAG 950 (950)
T ss_dssp TTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHH---HHHHHHHHHHHHHHHHC
T ss_pred ccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCcc---chHHHHHHHHHHHhhCC
Confidence 0001122266678888999999999999999999865344431 12245555555554443
No 259
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=78.88 E-value=9.4 Score=44.36 Aligned_cols=124 Identities=10% Similarity=0.114 Sum_probs=84.5
Q ss_pred ChHHHHHHHHHHHHcCCCCChHHHHHHHHh---hC--------------------CCChHHHHHHHHHHHHcCCHHHHHH
Q 008887 368 TPKELIALSVKFLSKGDKERPIPLLQLALN---KE--------------------PDNINALILMGQTQLQKGLLEEAVE 424 (550)
Q Consensus 368 ~~~~l~~la~~~~~~g~~~~A~~~~~~aL~---~~--------------------p~~~~a~~~lg~~~~~~g~~~eA~~ 424 (550)
++..-+-+|..++..|++++|..+|+++-. .+ ...+..|+....++.+.+.++.+++
T Consensus 841 ~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~ 920 (1139)
T 4fhn_B 841 DPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALE 920 (1139)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHH
T ss_pred CcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHH
Confidence 455567899999999999999999988732 11 1122445667788889999999999
Q ss_pred HHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhc
Q 008887 425 YLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNV 504 (550)
Q Consensus 425 ~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~ 504 (550)
..+.|++.. .+.++ . .....|.++-..+.+.|+|++|...+-..-.. .... +.+..|-..+.+.
T Consensus 921 fa~lAi~~~----~~~~~-~--~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~--~~r~-------~cLr~LV~~lce~ 984 (1139)
T 4fhn_B 921 FSLLADASK----ETDDE-D--LSIAITHETLKTACAAGKFDAAHVALMVLSTT--PLKK-------SCLLDFVNQLTKQ 984 (1139)
T ss_dssp HHHHHHHHC----CSCCH-H--HHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHS--SSCH-------HHHHHHHHHHHHH
T ss_pred HHHHHHHhc----cCCCh-h--hHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCH--HHHH-------HHHHHHHHHHHhC
Confidence 999999883 33333 1 11124667888999999999998888654322 1111 4555555555555
Q ss_pred CCH
Q 008887 505 GRN 507 (550)
Q Consensus 505 g~~ 507 (550)
|..
T Consensus 985 ~~~ 987 (1139)
T 4fhn_B 985 GKI 987 (1139)
T ss_dssp CCH
T ss_pred CCh
Confidence 543
No 260
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=75.61 E-value=2.3 Score=31.69 Aligned_cols=45 Identities=22% Similarity=0.218 Sum_probs=38.4
Q ss_pred cchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHHHHHHHh
Q 008887 489 HYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQLEN 533 (550)
Q Consensus 489 ~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~l~~ 533 (550)
.++.-...+|+.+...|++++|..++.+|+...|+-.+....+.+
T Consensus 15 ~~Fl~eV~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP~~LL~i~q~ 59 (73)
T 3ax2_A 15 KFFLEEIQLGEELLAQGDYEKGVDHLTNAIAVCGQPQQLLQVLQQ 59 (73)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 345566789999999999999999999999999998887776654
No 261
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=75.51 E-value=20 Score=34.86 Aligned_cols=24 Identities=25% Similarity=0.097 Sum_probs=19.5
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHH
Q 008887 492 DGLVVLASALCNVGRNAEAEKYLR 515 (550)
Q Consensus 492 ~~~~~La~~~~~~g~~~eA~~~l~ 515 (550)
+.+..+|..|.+.|++.+|+.+|-
T Consensus 135 ~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 135 YLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCCHHHHHHHHH
Confidence 788888888888888888887763
No 262
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=72.63 E-value=45 Score=29.36 Aligned_cols=57 Identities=9% Similarity=0.003 Sum_probs=42.5
Q ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhc
Q 008887 401 DNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGN 477 (550)
Q Consensus 401 ~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~ 477 (550)
.+++..+.++ .+.|+++.|.+..++. +. . ..|..+|.....+|+++-|.++|+++-+
T Consensus 6 ~D~~~rF~LA---L~lg~l~~A~e~a~~l-----------~~-~-----~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D 62 (177)
T 3mkq_B 6 QDPHIRFDLA---LEYGNLDAALDEAKKL-----------ND-S-----ITWERLIQEALAQGNASLAEMIYQTQHS 62 (177)
T ss_dssp SCHHHHHHHH---HHTTCHHHHHHHHHHH-----------CC-H-----HHHHHHHHHHHHTTCHHHHHHHHHHTTC
T ss_pred CChHHHHHHH---HhcCCHHHHHHHHHHh-----------CC-H-----HHHHHHHHHHHHcCChHHHHHHHHHhCC
Confidence 3455566555 5789999999876543 11 1 1677899999999999999999998543
No 263
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=70.02 E-value=27 Score=34.25 Aligned_cols=23 Identities=26% Similarity=0.209 Sum_probs=17.0
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHH
Q 008887 492 DGLVVLASALCNVGRNAEAEKYL 514 (550)
Q Consensus 492 ~~~~~La~~~~~~g~~~eA~~~l 514 (550)
+.+..+|..|.+.|++.+|+.+|
T Consensus 137 ~LH~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 137 ELHHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHccCCHHHHHHHH
Confidence 67777777777777777777665
No 264
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=68.66 E-value=5.6 Score=31.22 Aligned_cols=53 Identities=19% Similarity=0.200 Sum_probs=42.2
Q ss_pred CCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHHHHHHHh
Q 008887 481 PEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQLEN 533 (550)
Q Consensus 481 p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~l~~ 533 (550)
++|......++.-...+|+.+...|+.++|..+|.+++.+.|+-.+.+..+.+
T Consensus 10 ~~d~e~~e~~Fl~eV~lGE~L~~~g~~e~av~Hf~nAl~Vc~qP~~LL~i~q~ 62 (95)
T 1om2_A 10 LKDAEAVQKFFLEEIQLGEELLAQGDYEKGVDHLTNAIAVCGQPQQLLQVLQQ 62 (95)
T ss_dssp SSSHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 44554555567778899999999999999999999999999987776665543
No 265
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=66.05 E-value=52 Score=35.21 Aligned_cols=130 Identities=13% Similarity=-0.052 Sum_probs=87.5
Q ss_pred HHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh--------hhcCCCCC-------
Q 008887 377 VKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKL--------FLAGHPTE------- 441 (550)
Q Consensus 377 ~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~--------~~~~~p~~------- 441 (550)
...+..|+++.|..++++.-..........|.+|.++...|+.++|..+|+++..-. ...|.|..
T Consensus 293 r~Alr~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~~~fYg~lAa~~Lg~~~~~~~~~~~ 372 (618)
T 1qsa_A 293 RMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQQRGFYPMVAAQRIGEEYELKIDKAP 372 (618)
T ss_dssp HHHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSHHHHHHHHHTTCCCCCCCCCCC
T ss_pred HHHHHCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhcCCChHHHHHHHHcCCCCCCCCCCCC
Confidence 345677999999999987655444568889999999999999999999998875410 11121110
Q ss_pred hhhHHHHH-HHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHH
Q 008887 442 PEAIDLLI-VASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRL 516 (550)
Q Consensus 442 ~~~~~~l~-~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~ 516 (550)
+.....+. ......+..+...|...+|...+....+.. + . .-...++......|.++.++....+
T Consensus 373 ~~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~~-~--~-------~~~~~la~~a~~~~~~~~~v~~~~~ 438 (618)
T 1qsa_A 373 QNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKSK-S--K-------TEQAQLARYAFNNQWWDLSVQATIA 438 (618)
T ss_dssp SCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-C--H-------HHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hhHHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHhcC-C--H-------HHHHHHHHHHHHCCChHHHHHHHHH
Confidence 00000000 012346677889999999999888877643 1 1 3455778888889999888765543
No 266
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=62.62 E-value=87 Score=28.11 Aligned_cols=90 Identities=16% Similarity=0.022 Sum_probs=59.3
Q ss_pred HHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHh
Q 008887 424 EYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCN 503 (550)
Q Consensus 424 ~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~ 503 (550)
..++++++.. ..++.+.++..++. .|..++..+ ..++..++.+.|.-..... -.. ..+..|...|..+..
T Consensus 58 ~lLErc~~~F--~~~~rYkND~RYLk-lWl~Ya~~~-~~~~~~~p~~if~~L~~~~-IG~-----~~AlfYe~wA~~lE~ 127 (202)
T 3esl_A 58 STMERCLIYI--QDMETYRNDPRFLK-IWIWYINLF-LSNNFHESENTFKYMFNKG-IGT-----KLSLFYEEFSKLLEN 127 (202)
T ss_dssp HHHHHHHHHH--TTCGGGTTCHHHHH-HHHHHHHHH-STTCHHHHHHHHHHHHHHT-SST-----TBHHHHHHHHHHHHH
T ss_pred HHHHHHHHHh--cccccccCCHHHHH-HHHHHHHhh-cccccCCHHHHHHHHHHCC-CcH-----HHHHHHHHHHHHHHH
Confidence 5788888873 22444443333333 455555443 1333668888887765543 211 244778889999999
Q ss_pred cCCHHHHHHHHHHHHHcCCC
Q 008887 504 VGRNAEAEKYLRLAAAHNPQ 523 (550)
Q Consensus 504 ~g~~~eA~~~l~~al~~~p~ 523 (550)
.|++++|.+.|+.+++.+..
T Consensus 128 ~g~~~~A~~Vy~~GI~~~A~ 147 (202)
T 3esl_A 128 AQFFLEAKVLLELGAENNCR 147 (202)
T ss_dssp TTCHHHHHHHHHHHHHTTCB
T ss_pred cCCHHHHHHHHHHHHHcCCc
Confidence 99999999999999997744
No 267
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=59.50 E-value=28 Score=29.50 Aligned_cols=62 Identities=15% Similarity=0.173 Sum_probs=49.1
Q ss_pred HHHHHHHHH-HHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 008887 371 ELIALSVKF-LSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISK 432 (550)
Q Consensus 371 ~l~~la~~~-~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l 432 (550)
+.+++|..+ -.+|+.|+-.+.+...+..++-+++.+..+|.+|.+.|+..+|.+.+.+|-+.
T Consensus 92 e~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k 154 (172)
T 1wy6_A 92 EHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKK 154 (172)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 455777654 45677777777777767777778999999999999999999999999999877
No 268
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=57.31 E-value=36 Score=28.83 Aligned_cols=122 Identities=17% Similarity=0.043 Sum_probs=75.8
Q ss_pred HHHHHHHHcCCCCChHHHHHHHHhhCCCChHHH------------------HHHHHHH--HHcCCHHHHHHHHHHHHHHh
Q 008887 374 ALSVKFLSKGDKERPIPLLQLALNKEPDNINAL------------------ILMGQTQ--LQKGLLEEAVEYLECAISKL 433 (550)
Q Consensus 374 ~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~------------------~~lg~~~--~~~g~~~eA~~~~~~al~l~ 433 (550)
-.|......|..++..+...+..+..+-.-.-| ...|.++ ...|+...-+.+|-+.
T Consensus 12 meAK~~ildG~v~qGveii~k~~~ssni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDis~C~NlKrVi~C~~~~---- 87 (172)
T 1wy6_A 12 MDAKKFLLDGYIDEGVKIVLEITKSSTKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDKCQNLKSVVECGVIN---- 87 (172)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGGCSCTHHHHHHHHHT----
T ss_pred HHHHHHHHhhhHHHHHHHHHHHcCCCCccccceeeeecchhhchhHHHHHHHHHhhhcCcHhhhcHHHHHHHHHHh----
Confidence 456677888999999999999887654321111 1111111 1123334444444222
Q ss_pred hhcCCCCChhhHHHHHHHHHHHH-HHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHH
Q 008887 434 FLAGHPTEPEAIDLLIVASQWSG-VACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEK 512 (550)
Q Consensus 434 ~~~~~p~~~~~~~~l~~a~~~lg-~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~ 512 (550)
+.... . ..+| ..+..+|+-|+=-+.+...+... +-.+ +.++.+|.+|.+.|+..+|.+
T Consensus 88 ----n~~se-~--------vd~ALd~lv~~~KkDqLdki~~~~l~n~-~~~~-------~~l~kia~Ay~Klg~~r~a~e 146 (172)
T 1wy6_A 88 ----NTLNE-H--------VNKALDILVIQGKRDKLEEIGREILKNN-EVSA-------SILVAIANALRRVGDERDATT 146 (172)
T ss_dssp ----TCCCH-H--------HHHHHHHHHHTTCHHHHHHHHHHHC--C-CSCH-------HHHHHHHHHHHHTTCHHHHHH
T ss_pred ----cchHH-H--------HHHHHHHHHHhccHhHHHHHHHHHhccC-CCCh-------HHHHHHHHHHHHhcchhhHHH
Confidence 22222 1 1244 34567888888777777755543 5555 899999999999999999999
Q ss_pred HHHHHHHc
Q 008887 513 YLRLAAAH 520 (550)
Q Consensus 513 ~l~~al~~ 520 (550)
.+.++-+.
T Consensus 147 Ll~~AC~k 154 (172)
T 1wy6_A 147 LLIEACKK 154 (172)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHh
Confidence 99998764
No 269
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=53.54 E-value=11 Score=27.95 Aligned_cols=29 Identities=21% Similarity=0.268 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHhcCC
Q 008887 451 ASQWSGVACIRQEKWEEGIAHLERIGNLK 479 (550)
Q Consensus 451 a~~~lg~~~~~~g~~~eA~~~~~~al~~~ 479 (550)
-...+|..+...|++++|..+|-+|+...
T Consensus 19 ~eV~~GE~L~~~g~~~~~~~hf~nAl~Vc 47 (73)
T 3ax2_A 19 EEIQLGEELLAQGDYEKGVDHLTNAIAVC 47 (73)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHc
Confidence 34568999999999999999999999986
No 270
>3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster}
Probab=52.62 E-value=2.6e+02 Score=32.78 Aligned_cols=151 Identities=13% Similarity=0.080 Sum_probs=83.1
Q ss_pred HHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCH-----------------------HHH------HHHHHH
Q 008887 378 KFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLL-----------------------EEA------VEYLEC 428 (550)
Q Consensus 378 ~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~-----------------------~eA------~~~~~~ 428 (550)
.++..-+.+++.++|++.++.+|++..++..+-+.+.....- +++ ...+++
T Consensus 1116 ~~~~k~~~~~~~~~~~~l~~~~P~~l~~~~~~l~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1195 (1354)
T 3lxu_X 1116 SQIVKCELEMAEKIYNDVVAAHPKHLQANLLLIQNIESNQLKSQLPLTFVNAQKTSPPEAGESADKQKEDQKKVRSALER 1195 (1354)
T ss_dssp HHHTTSCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHHSSCCCCHHHHHHTTSCCCSSCTTHHHHTTHHHHHHHHHHHH
T ss_pred HHHhhcChHHHHHHHHHHHHHCCccHHHHHHHHHhhhhhhhhcccccccccccccccccccccccccchhhhhHHHHHHH
Confidence 345544556788999999999999999998877766542210 011 123444
Q ss_pred HHHHhhhcC----------------C--CCC-------hhhHHHHHHHHHHHHHHHHHhc--------CHHHHHHHHHHH
Q 008887 429 AISKLFLAG----------------H--PTE-------PEAIDLLIVASQWSGVACIRQE--------KWEEGIAHLERI 475 (550)
Q Consensus 429 al~l~~~~~----------------~--p~~-------~~~~~~l~~a~~~lg~~~~~~g--------~~~eA~~~~~~a 475 (550)
.++..-.+- + ++. ....+.+++|.+..|.++.+.. ..++-.+.|.+.
T Consensus 1196 ii~~ad~vi~~id~~~l~~~~g~k~d~~~~a~k~k~~m~~~k~~l~~al~~k~~ala~~~~~~~~~~~~~~~~~~~~~el 1275 (1354)
T 3lxu_X 1196 IVKLADKVIQETDSEALLSYYGLKNDTRADAAKIKTNMDKQKNTLIEALSKKGIAVAKLAVLDDCIKDSLAEINELYTEI 1275 (1354)
T ss_dssp HHHHHHHTTCHHHHTTTSTTCCSTHHHHCSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHH
Confidence 444320000 0 000 1133445556666555554331 223333445555
Q ss_pred hcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHHHHHHHhhHH
Q 008887 476 GNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQLENNDE 536 (550)
Q Consensus 476 l~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~l~~~~~ 536 (550)
++-.+..|. .....-..-....|+|..|.+++.++++-.+. .+..+.+.++.+
T Consensus 1276 ~k~~d~~d~-------k~~~~~~~~~~~~~~~g~~~k~l~k~~~~k~~-~~~~~~~~~~~~ 1328 (1354)
T 3lxu_X 1276 IKFVDANDS-------KAIQFALWHAYAHGHYGRMYKYVVKLIEEKRT-RDHFVELAAING 1328 (1354)
T ss_dssp TTSSCTTST-------TTHHHHHHHHHHHTCHHHHHHHHHHHHHHTCC-HHHHHHHHHHHH
T ss_pred HhhcccCCc-------eeehhHHHHHHHHHHHHHHHHHHHHHHhcccc-HHHHHHHHHHHH
Confidence 554334444 33333333344789999999999999988764 444455544333
No 271
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=50.70 E-value=49 Score=28.61 Aligned_cols=66 Identities=5% Similarity=0.074 Sum_probs=51.0
Q ss_pred ChHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCC------hHHHHH-H--HHHHHHcCCHHHHHHHHHHHHHHh
Q 008887 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDN------INALIL-M--GQTQLQKGLLEEAVEYLECAISKL 433 (550)
Q Consensus 368 ~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~------~~a~~~-l--g~~~~~~g~~~eA~~~~~~al~l~ 433 (550)
+....+..+..+++.|+|=+|.+.++.+-+..++. ...+.+ + |..+.+.|+...|...+++++...
T Consensus 31 ~~~~~~~~~i~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~~L 105 (161)
T 2ijq_A 31 TLRRAVVHGVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQYF 105 (161)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 45566788999999999999999999998876544 222333 2 334567899999999999999874
No 272
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=50.45 E-value=24 Score=27.57 Aligned_cols=42 Identities=19% Similarity=0.296 Sum_probs=32.6
Q ss_pred CCCChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCC
Q 008887 438 HPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLK 479 (550)
Q Consensus 438 ~p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~ 479 (550)
+|++.+..+.+..-...+|..+...|+++.|+.+|-+|+...
T Consensus 9 ~~~d~e~~e~~Fl~eV~lGE~L~~~g~~e~av~Hf~nAl~Vc 50 (95)
T 1om2_A 9 DLKDAEAVQKFFLEEIQLGEELLAQGDYEKGVDHLTNAIAVC 50 (95)
T ss_dssp CSSSHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHc
Confidence 455665554444456678999999999999999999999886
No 273
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=47.28 E-value=57 Score=28.20 Aligned_cols=65 Identities=12% Similarity=0.098 Sum_probs=46.8
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHH---HHHHHHhcCCHHHHHHHHHHHHH
Q 008887 453 QWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVV---LASALCNVGRNAEAEKYLRLAAA 519 (550)
Q Consensus 453 ~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~---La~~~~~~g~~~eA~~~l~~al~ 519 (550)
+.-|..++..|+|=+|-+.++.+-... +... +.......+.. .|..+.+.|+...|...+++++.
T Consensus 36 ~~~~i~lFn~g~yfeaHEvLEe~W~~~-~~~~-~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 36 VVHGVRLYNSGEFHESHDCFEDEWYNY-GRGN-TESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHTTTT-CSSS-HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCchHHHHHHHHHHHhc-CCCc-hHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 346788888999999999999988775 4331 11223344444 34456688999999999999977
No 274
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=47.23 E-value=77 Score=32.43 Aligned_cols=74 Identities=7% Similarity=-0.215 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHhcCCC--CCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCc
Q 008887 451 ASQWSGVACIRQEKWEEGIAHLERIGNLKE--PEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAH-NPQY 524 (550)
Q Consensus 451 a~~~lg~~~~~~g~~~eA~~~~~~al~~~~--p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~-~p~~ 524 (550)
....+-.+|++.|+.+-+...++..-.... +-+.....+....+|.+|+.+...+++.+|.+.+..|++. .|..
T Consensus 178 l~n~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~~ 254 (455)
T 3t5v_B 178 LVNKLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNLP 254 (455)
T ss_dssp HHHHHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccceEeeeHHHHHHHHHHccHHHHHHHHHHHHHhcCCcc
Confidence 344566889999999999888864322210 1111122345678999999999999999999999999998 7654
No 275
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=46.72 E-value=1.4e+02 Score=27.31 Aligned_cols=88 Identities=10% Similarity=-0.016 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHH
Q 008887 422 AVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASAL 501 (550)
Q Consensus 422 A~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~ 501 (550)
=...++++++.. ..++.+.++..++. .|..++.. .+++.+.|.-..... -.. ..+..|...|..+
T Consensus 96 L~~lLErc~~~F--~~~~rYknD~RyLk-lWl~Ya~~------~~~p~~if~~L~~~~-IG~-----~~AlfYe~wA~~l 160 (223)
T 4aez_C 96 LVTLLERCTREF--VRNPLYKDDVRYLR-IWMQYVNY------IDEPVELFSFLAHHH-IGQ-----ESSIFYEEYANYF 160 (223)
T ss_dssp HHHHHHHHHHHT--TTCGGGTTCHHHHH-HHHHHHTT------CSCHHHHHHHHHHTT-CST-----TBHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh--cccccccCCHHHHH-HHHHHHHc------cCCHHHHHHHHHHCC-cch-----hHHHHHHHHHHHH
Confidence 356778888773 22333332332222 34444432 246666666655443 211 2447788899999
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCc
Q 008887 502 CNVGRNAEAEKYLRLAAAHNPQY 524 (550)
Q Consensus 502 ~~~g~~~eA~~~l~~al~~~p~~ 524 (550)
...|++.+|.+.|+.+++.+..-
T Consensus 161 E~~g~~~~A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 161 ESRGLFQKADEVYQKGKRMKAKP 183 (223)
T ss_dssp HHTTCHHHHHHHHHHHHHHTCBS
T ss_pred HHcCCHHHHHHHHHHHHHcCCcc
Confidence 99999999999999999977553
No 276
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=46.66 E-value=87 Score=28.12 Aligned_cols=79 Identities=11% Similarity=-0.022 Sum_probs=54.2
Q ss_pred HHHHHHHhh---------CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHH
Q 008887 390 PLLQLALNK---------EPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACI 460 (550)
Q Consensus 390 ~~~~~aL~~---------~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~ 460 (550)
.+++++++. ||.....|..++..+ ..+...++.+.|.-.... .-... +...|...|..+.
T Consensus 58 ~lLErc~~~F~~~~rYkND~RYLklWl~Ya~~~-~~~~~~~p~~if~~L~~~-----~IG~~-----~AlfYe~wA~~lE 126 (202)
T 3esl_A 58 STMERCLIYIQDMETYRNDPRFLKIWIWYINLF-LSNNFHESENTFKYMFNK-----GIGTK-----LSLFYEEFSKLLE 126 (202)
T ss_dssp HHHHHHHHHHTTCGGGTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHH-----TSSTT-----BHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccccccCCHHHHHHHHHHHHhh-cccccCCHHHHHHHHHHC-----CCcHH-----HHHHHHHHHHHHH
Confidence 577777772 223344555555543 234477888888887776 33332 1135667889999
Q ss_pred HhcCHHHHHHHHHHHhcCC
Q 008887 461 RQEKWEEGIAHLERIGNLK 479 (550)
Q Consensus 461 ~~g~~~eA~~~~~~al~~~ 479 (550)
..|++++|.+.|+..++..
T Consensus 127 ~~g~~~~A~~Vy~~GI~~~ 145 (202)
T 3esl_A 127 NAQFFLEAKVLLELGAENN 145 (202)
T ss_dssp HTTCHHHHHHHHHHHHHTT
T ss_pred HcCCHHHHHHHHHHHHHcC
Confidence 9999999999999999875
No 277
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=45.98 E-value=1.4e+02 Score=33.75 Aligned_cols=103 Identities=9% Similarity=0.066 Sum_probs=70.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCcc-c
Q 008887 408 LMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPK-S 486 (550)
Q Consensus 408 ~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~-~ 486 (550)
.+...+...|.++-|.+ .+.. .|.++ . .-|.+|+++...|++++|.++|++|-.--...... .
T Consensus 815 ~l~~~L~~~~~~~~a~e----L~~~-----~~~t~-~------~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~ 878 (950)
T 4gq2_M 815 ELVEKLFLFKQYNACMQ----LIGW-----LNSDP-I------AVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFA 878 (950)
T ss_dssp HHHHHHHHTTCHHHHHH----HGGG-----CCSSH-H------HHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCG
T ss_pred HHHHHHHHhcHHHHHHH----HHhh-----cCCCh-H------HHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCccccc
Confidence 36667778888875543 3334 56665 2 33679999999999999999999976432111100 0
Q ss_pred --------------cccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCcHH
Q 008887 487 --------------KAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHN-PQYNE 526 (550)
Q Consensus 487 --------------~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~-p~~~~ 526 (550)
.......|.....++.+.+-++-+++..+.|++.- +++..
T Consensus 879 ~~~~~~~ll~~~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~ 933 (950)
T 4gq2_M 879 VLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDED 933 (950)
T ss_dssp GGHHHHHHHHHTTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHH
T ss_pred chhhhhhccCcccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCcc
Confidence 00122356678888999999999999999999744 45554
No 278
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=45.24 E-value=2.2e+02 Score=27.51 Aligned_cols=28 Identities=7% Similarity=-0.205 Sum_probs=23.5
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCcHH
Q 008887 499 SALCNVGRNAEAEKYLRLAAAHNPQYNE 526 (550)
Q Consensus 499 ~~~~~~g~~~eA~~~l~~al~~~p~~~~ 526 (550)
...++.++|..|...-++.+++.|....
T Consensus 215 ~~a~K~KNy~tAa~fArrLLel~p~~~~ 242 (325)
T 3mv2_A 215 SQHFKHKNFLQASYFAGEFLKIISSGPR 242 (325)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTCCSSHH
T ss_pred HHHHHhhhHHHHHHHHHHHHhcCCCHHH
Confidence 4467899999999999999999986443
No 279
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=44.62 E-value=1.7e+02 Score=29.05 Aligned_cols=96 Identities=9% Similarity=-0.140 Sum_probs=60.7
Q ss_pred HHHHcCCCCChHHHHHHHHhhC-----------------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCC
Q 008887 378 KFLSKGDKERPIPLLQLALNKE-----------------PDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPT 440 (550)
Q Consensus 378 ~~~~~g~~~~A~~~~~~aL~~~-----------------p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~ 440 (550)
......+.++|++.+++..+.. .....+...++..|...|+.++|..+++++-......++..
T Consensus 85 ~~~~~~d~~~al~~L~~~~~~~~~~~~~~~~~~~~~~~~ea~l~i~~~i~~~yl~~~d~~~a~~~l~~~~~~l~~~~~~~ 164 (393)
T 4b4t_O 85 SLKDSKDFDESLKYLDDLKAQFQELDSKKQRNNGSKDHGDGILLIDSEIARTYLLKNDLVKARDLLDDLEKTLDKKDSIP 164 (393)
T ss_dssp HHHHTTCHHHHHHHHHHHTTTSHHHHSSCCCCCCSSSSCCSHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCCSS
T ss_pred HHhhcCCHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhccCCcc
Confidence 3445567778888887764321 11234556789999999999999999999976643222222
Q ss_pred ChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhc
Q 008887 441 EPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGN 477 (550)
Q Consensus 441 ~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~ 477 (550)
.... ...+...+..+...+++.++....-..+.
T Consensus 165 ~~v~----~~~y~~~~~~~~~~~~~a~~y~~~l~~l~ 197 (393)
T 4b4t_O 165 LRIT----NSFYSTNSQYFKFKNDFNSFYYTSLLYLS 197 (393)
T ss_dssp SHHH----HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHH----HHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 2211 12344566677778888877766555543
No 280
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=43.61 E-value=99 Score=30.84 Aligned_cols=136 Identities=7% Similarity=-0.052 Sum_probs=78.9
Q ss_pred CCCCChHHHHHHHHhhCCC--Ch-HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhc--C---CCCChhhHHHHHHHHHH
Q 008887 383 GDKERPIPLLQLALNKEPD--NI-NALILMGQTQLQKGLLEEAVEYLECAISKLFLA--G---HPTEPEAIDLLIVASQW 454 (550)
Q Consensus 383 g~~~~A~~~~~~aL~~~p~--~~-~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~--~---~p~~~~~~~~l~~a~~~ 454 (550)
...+..+++|+..+....+ ++ .....+..+.....+.++|.+++++........ . +.......+........
T Consensus 53 ~~~~~~~~ly~~fi~~f~~kin~L~lv~~~~~~~~~~~d~~~al~~L~~~~~~~~~~~~~~~~~~~~~~~~ea~l~i~~~ 132 (393)
T 4b4t_O 53 KSTPLRLRLYDNFVSKFYDKINQLSVVKYLLASLKDSKDFDESLKYLDDLKAQFQELDSKKQRNNGSKDHGDGILLIDSE 132 (393)
T ss_dssp SSCCCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHTTCHHHHHHHHHHHTTTSHHHHSSCCCCCCSSSSCCSHHHHHHH
T ss_pred hcchHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhHHHHHHH
Confidence 4455567777776653211 11 111223456677889999999998764331000 0 00000011112225556
Q ss_pred HHHHHHHhcCHHHHHHHHHHHhcCCC-CCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008887 455 SGVACIRQEKWEEGIAHLERIGNLKE-PEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAA 519 (550)
Q Consensus 455 lg~~~~~~g~~~eA~~~~~~al~~~~-p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~ 519 (550)
.+..|...|+.++|...++++-..-+ ..+. +..-.+..+...+..|...+++.++....-..+.
T Consensus 133 i~~~yl~~~d~~~a~~~l~~~~~~l~~~~~~-~~~v~~~~y~~~~~~~~~~~~~a~~y~~~l~~l~ 197 (393)
T 4b4t_O 133 IARTYLLKNDLVKARDLLDDLEKTLDKKDSI-PLRITNSFYSTNSQYFKFKNDFNSFYYTSLLYLS 197 (393)
T ss_dssp HHHHHHHHSCHHHHHHHHHHHHHHHHHSCCS-SSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHhhhccCCc-cHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 78899999999999999998764310 1111 1112345666677788889999988877766664
No 281
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=42.83 E-value=1.6e+02 Score=25.34 Aligned_cols=87 Identities=14% Similarity=0.052 Sum_probs=53.0
Q ss_pred HHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHH
Q 008887 423 VEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALC 502 (550)
Q Consensus 423 ~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~ 502 (550)
...++++++.. ..++.+.++..++. .|..++... +++.+.|.-..... -. ...+..|...|..+.
T Consensus 43 ~~lLErc~~~f--~~~~~YknD~RyLk-lWl~ya~~~------~~p~~if~~L~~~~-IG-----~~~AlfY~~wA~~lE 107 (164)
T 2wvi_A 43 STLLERAVEAL--QGEKRYYSDPRFLN-LWLKLGRLC------NEPLDMYSYLHNQG-IG-----VSLAQFYISWAEEYE 107 (164)
T ss_dssp HHHHHHHHHHT--TTCGGGTTCHHHHH-HHHHHHHHC------SCHHHHHHHHHHTT-SS-----TTBHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh--hhhhhhccCHHHHH-HHHHHHHhc------CCHHHHHHHHHHCC-cc-----hhhHHHHHHHHHHHH
Confidence 44667777762 12333332332332 444444432 33555666544432 21 124478888999999
Q ss_pred hcCCHHHHHHHHHHHHHcCCCc
Q 008887 503 NVGRNAEAEKYLRLAAAHNPQY 524 (550)
Q Consensus 503 ~~g~~~eA~~~l~~al~~~p~~ 524 (550)
..|++.+|.+.|+.+++.+..-
T Consensus 108 ~~~~~~~A~~Iy~~Gi~~~A~P 129 (164)
T 2wvi_A 108 ARENFRKADAIFQEGIQQKAEP 129 (164)
T ss_dssp HTTCHHHHHHHHHHHHHTTCBS
T ss_pred HcCCHHHHHHHHHHHHHcCCCc
Confidence 9999999999999999977443
No 282
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=42.81 E-value=39 Score=26.16 Aligned_cols=27 Identities=22% Similarity=0.120 Sum_probs=18.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 008887 406 LILMGQTQLQKGLLEEAVEYLECAISK 432 (550)
Q Consensus 406 ~~~lg~~~~~~g~~~eA~~~~~~al~l 432 (550)
+.-++..+...|+|++|+++.+++...
T Consensus 18 ~~RrAe~ll~~gkydeAIech~kAa~y 44 (97)
T 2crb_A 18 QSRRADRLLAAGKYEEAISCHRKATTY 44 (97)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 445667777777777777777766544
No 283
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=40.20 E-value=1e+02 Score=27.59 Aligned_cols=27 Identities=22% Similarity=0.351 Sum_probs=13.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 008887 406 LILMGQTQLQKGLLEEAVEYLECAISK 432 (550)
Q Consensus 406 ~~~lg~~~~~~g~~~eA~~~~~~al~l 432 (550)
+|.+|..++..++|.+|.+++.+|++.
T Consensus 17 ~YYlGr~~~~~~~y~~A~~~L~~A~~~ 43 (203)
T 3t5x_A 17 KYYVGRKAMFDSDFKQAEEYLSFAFEH 43 (203)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 344455555555555555555555444
No 284
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=38.53 E-value=1.3e+02 Score=23.32 Aligned_cols=62 Identities=19% Similarity=0.009 Sum_probs=41.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHH--HHHhcCHHHHHHHHHHHhcC
Q 008887 407 ILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVA--CIRQEKWEEGIAHLERIGNL 478 (550)
Q Consensus 407 ~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~--~~~~g~~~eA~~~~~~al~~ 478 (550)
+..|..++..|+|=+|-+.++..... .+. + ..+.+ .....++.+ +...|+. |...+++++..
T Consensus 5 ~~~~~~lfn~g~~~eaHEvlE~~W~~-----~~~-~-~~~~~-qGLIq~Ava~~h~~~gn~--a~~ll~~a~~~ 68 (94)
T 2cwy_A 5 WEEVLGLWRAGRYYEVHEVLEPYWLK-----ATG-E-ERRLL-QGVILLAAALHQRRLGRP--GLRNLRKAEAR 68 (94)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH-----CCH-H-HHHHH-HHHHHHHHHHHHHHTTCC--CHHHHHHHHHH
T ss_pred HHHHHHHHhCCChHHHHHHHHHHHhh-----CCC-c-hHHHH-HHHHHHHHHHHHHHcCcH--HHHHHHHHHHH
Confidence 34577788889999999999999887 422 2 22222 244444444 4467777 99999988763
No 285
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=38.18 E-value=62 Score=33.13 Aligned_cols=33 Identities=3% Similarity=-0.126 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHhcC-CCCCC
Q 008887 450 VASQWSGVACIRQEKWEEGIAHLERIGNL-KEPEE 483 (550)
Q Consensus 450 ~a~~~lg~~~~~~g~~~eA~~~~~~al~~-~~p~~ 483 (550)
...|++|..+..+++|.+|.+.+..|++. . |..
T Consensus 221 ~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lc-p~~ 254 (455)
T 3t5v_B 221 EYRYLLGRYYLLNSQVHNAFVQFNEAFQSLL-NLP 254 (455)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-HCC
T ss_pred eeeHHHHHHHHHHccHHHHHHHHHHHHHhcC-Ccc
Confidence 37889999999999999999999999998 7 544
No 286
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=36.70 E-value=30 Score=37.39 Aligned_cols=52 Identities=19% Similarity=0.217 Sum_probs=46.4
Q ss_pred hHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHH
Q 008887 369 PKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLE 420 (550)
Q Consensus 369 ~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~ 420 (550)
.+.+.+.|...+..|+|.-|.++...++..+|++.++...++.+|.+.|.-.
T Consensus 449 ~~~~~~~a~~~~~~g~~~wa~~l~~~~~~~~p~~~~a~~l~a~~~~~l~~~~ 500 (658)
T 2cfu_A 449 AERLLEQARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADALEQLGYQA 500 (658)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHhc
Confidence 4566788999999999999999999999999999999999999998887544
No 287
>1pyv_A ATP synthase beta chain, mitochondrial precursor; hydrolase; NMR {Nicotiana plumbaginifolia} SCOP: j.36.4.1
Probab=36.68 E-value=33 Score=22.24 Aligned_cols=15 Identities=40% Similarity=0.552 Sum_probs=12.3
Q ss_pred CchHHHHHHHhhhcc
Q 008887 1 MATAKLLLLQLRRCS 15 (550)
Q Consensus 1 ~~~~~~~~~~~~~~~ 15 (550)
||.||+|-++||.+-
T Consensus 1 masrrllasllrqsa 15 (54)
T 1pyv_A 1 MASRRLLASLLRQSA 15 (54)
T ss_dssp -CCSHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHH
Confidence 899999999999853
No 288
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=36.66 E-value=1.2e+02 Score=29.89 Aligned_cols=70 Identities=19% Similarity=0.072 Sum_probs=45.3
Q ss_pred CChHHHHHHHHHHHHcCCHH--HHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhc
Q 008887 401 DNINALILMGQTQLQKGLLE--EAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGN 477 (550)
Q Consensus 401 ~~~~a~~~lg~~~~~~g~~~--eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~ 477 (550)
..+.++.+||.+-...--.. .++..|.+|+...+..-+..+. + -|.++|-++++.+++.+|++.+.++-+
T Consensus 253 rYPmALgnLgDLEe~~pt~gr~~~l~L~~~AI~sa~~yY~n~Hv--Y-----PYtylgGy~yR~~~~reAl~~WA~Aa~ 324 (472)
T 3re2_A 253 TYPMAIANLGDLEEISPTPGRPPAEELFKEAITVAKREYSDHHI--Y-----PYTYLGGYYYRKKKYYEAIASWVDAGY 324 (472)
T ss_dssp TCHHHHHHHHHHHHHSCCTTSCCHHHHHHHHHHHHHHHSTTCCS--H-----HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hCchhhcchhhHHhcCCCCCCCCHHHHHHHHHHHHHHHhccCCc--c-----chhhhhhhhhhcchHHHHHHHHHHHHH
Confidence 35666666666554332222 3788888888774322222222 1 455688899999999999999877654
No 289
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=36.45 E-value=3e+02 Score=26.52 Aligned_cols=27 Identities=11% Similarity=0.129 Sum_probs=22.7
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCcH
Q 008887 499 SALCNVGRNAEAEKYLRLAAAHNPQYN 525 (550)
Q Consensus 499 ~~~~~~g~~~eA~~~l~~al~~~p~~~ 525 (550)
...++.++|..|...-++.+++.|...
T Consensus 206 ~~a~K~KNy~tAa~fArrLLel~p~~~ 232 (320)
T 3mkr_B 206 NLFFKLKNFRTAAAFARRLLELGPKPE 232 (320)
T ss_dssp HHHHHTTBHHHHHHHHHHHHHTCCCHH
T ss_pred HHHHHhhhHHHHHHHHHHHHhcCCCHH
Confidence 446789999999999999999988633
No 290
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=35.99 E-value=43 Score=25.90 Aligned_cols=29 Identities=24% Similarity=0.111 Sum_probs=23.2
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008887 490 YYDGLVVLASALCNVGRNAEAEKYLRLAA 518 (550)
Q Consensus 490 ~~~~~~~La~~~~~~g~~~eA~~~l~~al 518 (550)
.+-.+...++.+...|+|++|+++.+++.
T Consensus 14 ~AH~~~RrAe~ll~~gkydeAIech~kAa 42 (97)
T 2crb_A 14 LAHQQSRRADRLLAAGKYEEAISCHRKAT 42 (97)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hhhHhhhHHHHHHhcCCHHHHHHHHHHHH
Confidence 34566788889999999999988777654
No 291
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=34.35 E-value=57 Score=29.30 Aligned_cols=36 Identities=17% Similarity=0.050 Sum_probs=32.1
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcH
Q 008887 490 YYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYN 525 (550)
Q Consensus 490 ~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~ 525 (550)
.....+.+|+.+...+++.+|.+.+.+|++..|...
T Consensus 13 ~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~~ 48 (203)
T 3t5x_A 13 RVTYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRSS 48 (203)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTTC
T ss_pred HHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHhH
Confidence 446789999999999999999999999999988654
No 292
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=33.61 E-value=3.6e+02 Score=26.58 Aligned_cols=67 Identities=15% Similarity=-0.003 Sum_probs=49.2
Q ss_pred ChHHHHHHHHHHHHc--CCCCChHHHHHHHHhh-----CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 008887 368 TPKELIALSVKFLSK--GDKERPIPLLQLALNK-----EPDNINALILMGQTQLQKGLLEEAVEYLECAISKLF 434 (550)
Q Consensus 368 ~~~~l~~la~~~~~~--g~~~~A~~~~~~aL~~-----~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~ 434 (550)
.|-++-++|...-.. .....++.+|.+|+.. +..+.--+..+|-.+++.+++.+|++++.+|-....
T Consensus 254 YPmALgnLgDLEe~~pt~gr~~~l~L~~~AI~sa~~yY~n~HvYPYtylgGy~yR~~~~reAl~~WA~Aa~Vi~ 327 (472)
T 3re2_A 254 YPMAIANLGDLEEISPTPGRPPAEELFKEAITVAKREYSDHHIYPYTYLGGYYYRKKKYYEAIASWVDAGYVAG 327 (472)
T ss_dssp CHHHHHHHHHHHHHSCCTTSCCHHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred CchhhcchhhHHhcCCCCCCCCHHHHHHHHHHHHHHHhccCCccchhhhhhhhhhcchHHHHHHHHHHHHHHHH
Confidence 455566666644433 3344589999999883 345666778888899999999999999998877743
No 293
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=32.14 E-value=31 Score=25.94 Aligned_cols=25 Identities=16% Similarity=0.288 Sum_probs=19.6
Q ss_pred HHHHHHHHHcCCCCChHHHHHHHHh
Q 008887 373 IALSVKFLSKGDKERPIPLLQLALN 397 (550)
Q Consensus 373 ~~la~~~~~~g~~~~A~~~~~~aL~ 397 (550)
..+|..+...|+|+.|+.+|+.+++
T Consensus 16 ~k~ARe~Al~GnYdta~~yY~g~~~ 40 (78)
T 2rpa_A 16 VKLAREYALLGNYDSAMVYYQGVLD 40 (78)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcChHHHHHHHHHHHH
Confidence 3778888888888888888887765
No 294
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=31.85 E-value=2.4e+02 Score=23.97 Aligned_cols=87 Identities=10% Similarity=-0.040 Sum_probs=53.7
Q ss_pred HHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHH
Q 008887 423 VEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALC 502 (550)
Q Consensus 423 ~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~ 502 (550)
...++++++.. ..++...++..++. .|...+.. .+++.+.|.-..... -.. ..+..|...|..+.
T Consensus 48 ~~lLErc~~~f--~~~~~YknD~RyLk-lWl~ya~~------~~dp~~if~~L~~~~-IG~-----~~AlfYe~wA~~lE 112 (152)
T 4a1g_A 48 ITLLEHLMKEF--LDKKKYHNDPRFIS-YCLKFAEY------NSDLHQFFEFLYNHG-IGT-----LSSPLYIAWAGHLE 112 (152)
T ss_dssp HHHHHHHHHHH--TTCGGGTTCHHHHH-HHHHHHTT------BSCHHHHHHHHHTTT-TTT-----TBHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh--cccccccCCHHHHH-HHHHHHHh------cCCHHHHHHHHHHCC-CcH-----HHHHHHHHHHHHHH
Confidence 45566776662 12333332322222 33333322 344777777765543 211 24477888999999
Q ss_pred hcCCHHHHHHHHHHHHHcCCCc
Q 008887 503 NVGRNAEAEKYLRLAAAHNPQY 524 (550)
Q Consensus 503 ~~g~~~eA~~~l~~al~~~p~~ 524 (550)
..|++++|.+.|+.+++.+..-
T Consensus 113 ~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 113 AQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp HTTCHHHHHHHHHHHHHTTCBS
T ss_pred HcCCHHHHHHHHHHHHHcCCcc
Confidence 9999999999999999976443
No 295
>1z65_A PRPLP, prion-like protein doppel, doppelganger; transmembrane helix, DHPC, mouse doppel, unknown function; NMR {Synthetic}
Probab=30.76 E-value=31 Score=20.33 Aligned_cols=16 Identities=31% Similarity=0.731 Sum_probs=11.1
Q ss_pred hcCChHHHHHHHHHHHH
Q 008887 117 FTGFPWWTIIVSSTVAL 133 (550)
Q Consensus 117 ~~glpw~~~I~~~t~~v 133 (550)
..| .||++|+...+..
T Consensus 4 hLG-~~wlai~c~LLfs 19 (30)
T 1z65_A 4 RLG-TWWVAILCMLLAS 19 (30)
T ss_dssp SCS-SHHHHHHHHHHHH
T ss_pred hhh-hhHHHHHHHHHHh
Confidence 356 7999988765543
No 296
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=29.32 E-value=48 Score=24.86 Aligned_cols=28 Identities=21% Similarity=0.099 Sum_probs=24.1
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008887 492 DGLVVLASALCNVGRNAEAEKYLRLAAA 519 (550)
Q Consensus 492 ~~~~~La~~~~~~g~~~eA~~~l~~al~ 519 (550)
.-...+|+=|...|+|+.|..+|+.+++
T Consensus 13 ~e~~k~ARe~Al~GnYdta~~yY~g~~~ 40 (78)
T 2rpa_A 13 VENVKLAREYALLGNYDSAMVYYQGVLD 40 (78)
T ss_dssp HHHHHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcChHHHHHHHHHHHH
Confidence 3466889999999999999999998765
No 297
>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*
Probab=29.23 E-value=1.7e+02 Score=29.30 Aligned_cols=69 Identities=7% Similarity=-0.081 Sum_probs=43.2
Q ss_pred ChHHHHHHHHHHHHcCCHH--HHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhc
Q 008887 402 NINALILMGQTQLQKGLLE--EAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGN 477 (550)
Q Consensus 402 ~~~a~~~lg~~~~~~g~~~--eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~ 477 (550)
.+.++.+||.+-...--.. .+++.|.+++...+..-+..+. + -|.++|-++++.+++.+|+..+.++-+
T Consensus 276 YPmALgnLgDLEe~~pt~gr~~~~~L~~~AI~sa~~~Y~n~Hv--Y-----PYtYlgGy~yR~~~~reAl~~WA~Aa~ 346 (550)
T 3u84_A 276 YPMALGNLADLEELEPTPGRPDPLTLYHKGIASAKTYYRDEHI--Y-----PYMYLAGYHCRNRNVREALQAWADTAT 346 (550)
T ss_dssp CHHHHHHHHHHHHHSCCTTCCCHHHHHHHHHHHHHHHSTTCCS--H-----HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CchhhcchhhHhhcCCCCCCCCHHHHHHHHHHHHHHHhccCCc--c-----ceeecchhhhhcchHHHHHHHHHHHHH
Confidence 4555666665544332222 4778888888764222122222 1 455688899999999999999877654
No 298
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=28.69 E-value=85 Score=23.70 Aligned_cols=24 Identities=25% Similarity=0.173 Sum_probs=16.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHH
Q 008887 409 MGQTQLQKGLLEEAVEYLECAISK 432 (550)
Q Consensus 409 lg~~~~~~g~~~eA~~~~~~al~l 432 (550)
.|.-.-..|++++|+.+|.++++.
T Consensus 25 ~Ave~D~~g~y~eAl~lY~~aie~ 48 (83)
T 2w2u_A 25 NAVKADKEGNAEEAITNYKKAIEV 48 (83)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHH
Confidence 334445667777777777777666
No 299
>3iqu_A 14-3-3 protein sigma; signal transuction, nucleus, phosphoprotein, secreted, prote binding, signaling protein; HET: SEP; 1.05A {Homo sapiens} SCOP: a.118.7.1 PDB: 3iqj_A* 3iqv_A* 3mhr_A* 3lw1_A* 3o8i_A* 3p1n_A* 3p1o_A* 3t0l_A* 3t0m_A* 3u9x_A* 3ux0_A* 4dat_A* 4dau_A* 3p1s_A* 3p1r_A* 3smk_A* 3spr_A* 3p1q_A* 3p1p_A* 3sml_A* ...
Probab=27.80 E-value=64 Score=29.80 Aligned_cols=48 Identities=13% Similarity=0.094 Sum_probs=36.9
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHH-HHHHHHhhHHHHH
Q 008887 492 DGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNE-LLEQLENNDEEFV 539 (550)
Q Consensus 492 ~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~-~~~~l~~~~~~~~ 539 (550)
+-+..+|.+..+.++|++..++.+++.+.+++... -++.+.-+..+..
T Consensus 9 e~~v~~AklaeqaeRyddM~~~mk~v~~~~~eLs~EERnLLSvaYKNvi 57 (236)
T 3iqu_A 9 ASLIQKAKLAEQAERYEDMAAFMKGAVEKGEELSCEERNLLSVAYKNVV 57 (236)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHhhc
Confidence 45678899999999999999999999999877654 4444555544443
No 300
>4gq4_A Menin; tumor suppressor, nucleus, transcription-transcription inhib complex; HET: 0RT EPE PE4; 1.27A {Homo sapiens} PDB: 4gq3_A* 4gpq_A* 4gq6_A*
Probab=27.65 E-value=2.9e+02 Score=27.74 Aligned_cols=101 Identities=18% Similarity=0.125 Sum_probs=0.0
Q ss_pred HcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHH
Q 008887 415 QKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGL 494 (550)
Q Consensus 415 ~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~ 494 (550)
...+|.-|+-.+-..-++ .|+.. ..+.+.. +.+|+..-++..... .-.+ |
T Consensus 257 hl~~YPmALgnLgDLEei-----~pt~g-rp~~~~L--------------f~~AI~~ar~~Y~~~-hvYP---------Y 306 (489)
T 4gq4_A 257 HLERYPMALGNLADLEEL-----EPTPG-RPDPLTL--------------YHKGIASAKTYYRDE-HIYP---------Y 306 (489)
T ss_dssp TTTTCHHHHHHHHHHHHH-----SCCTT-SCCHHHH--------------HHHHHHHHHHHSTTC-CSHH---------H
T ss_pred chhhcchhhhcccCHhhc-----CCCCC-CCCHHHH--------------HHHHHHHHHHhcccC-cccc---------e
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcC------CCcHHHHHHHHhhHHHHHhhhhhc
Q 008887 495 VVLASALCNVGRNAEAEKYLRLAAAHN------PQYNELLEQLENNDEEFVSDLSSS 545 (550)
Q Consensus 495 ~~La~~~~~~g~~~eA~~~l~~al~~~------p~~~~~~~~l~~~~~~~~~~l~~~ 545 (550)
..+|-.+.+.+++.+|.+.+.++-..- .++.+..+.+.++.++..-+..+.
T Consensus 307 tYlgG~~~R~~~~~eAl~~wa~aa~Vi~~YnY~reDeEiYke~~eIanelip~~lk~ 363 (489)
T 4gq4_A 307 MYLAGYHCRNRNVREALQAWADTATVIQDYNYCREDEEIYKEFFEVANDVIPNLLKE 363 (489)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCCCTTCHHHHHHHHHHHHTHHHHHHHH
T ss_pred eecchHHHHhhhHHHHHHHhhhhhhhhhhcccccchHHHHHHHHHHHHHhhhHHHHH
No 301
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=27.13 E-value=77 Score=23.86 Aligned_cols=23 Identities=26% Similarity=0.388 Sum_probs=15.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHH
Q 008887 410 GQTQLQKGLLEEAVEYLECAISK 432 (550)
Q Consensus 410 g~~~~~~g~~~eA~~~~~~al~l 432 (550)
|.-.-..|++++|+.+|.++++.
T Consensus 18 Ave~D~~g~y~eAl~lY~~aie~ 40 (83)
T 2v6y_A 18 AVKADKEGKVEDAITYYKKAIEV 40 (83)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHH
Confidence 34445667777777777777766
No 302
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=26.31 E-value=87 Score=23.64 Aligned_cols=19 Identities=21% Similarity=0.095 Sum_probs=11.6
Q ss_pred HHhcCCHHHHHHHHHHHHH
Q 008887 501 LCNVGRNAEAEKYLRLAAA 519 (550)
Q Consensus 501 ~~~~g~~~eA~~~l~~al~ 519 (550)
..+.|++++|..+|.++++
T Consensus 29 ~D~~g~y~eAl~lY~~aie 47 (83)
T 2w2u_A 29 ADKEGNAEEAITNYKKAIE 47 (83)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHH
Confidence 3456677766666665544
No 303
>3ubw_A 14-3-3E, 14-3-3 protein epsilon; adapter protein, signaling protein, signaling protein-protei complex; HET: SEP; 1.90A {Homo sapiens}
Probab=25.66 E-value=66 Score=30.13 Aligned_cols=47 Identities=15% Similarity=0.067 Sum_probs=36.2
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHH-HHHHHHhhHHHH
Q 008887 492 DGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNE-LLEQLENNDEEF 538 (550)
Q Consensus 492 ~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~-~~~~l~~~~~~~ 538 (550)
+-+..+|.+..+.++|++..++.+++.+.+++... -++.|..+..+.
T Consensus 32 e~lv~~AKLaeqaeRYddMv~~MK~v~~~~~eLt~EERNLLSvAYKNv 79 (261)
T 3ubw_A 32 EDLVYQAKLAEQAERYDEMVESMKKVAGMDVELTVEERNLLSVAYKNV 79 (261)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHhc
Confidence 56778899999999999999999999998877654 444445544444
No 304
>3mcx_A SUSD superfamily protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE GOL; 1.49A {Bacteroides thetaiotaomicron}
Probab=25.24 E-value=1.5e+02 Score=30.36 Aligned_cols=54 Identities=13% Similarity=0.150 Sum_probs=38.1
Q ss_pred HHHHHHHHHHhcCCCCCC-ccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 008887 466 EEGIAHLERIGNLKEPEE-PKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAH 520 (550)
Q Consensus 466 ~eA~~~~~~al~~~~p~~-~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~ 520 (550)
+.-++.+++|+..- |.. ...+.....++..+|++|.-.|++++|.++.++++..
T Consensus 177 ~~I~~DL~~A~~~L-~~~~~~gr~tk~aa~allarvyL~~~~~~~A~~~a~~vi~~ 231 (477)
T 3mcx_A 177 EQVVSDMSNALSGL-RQETSNGYINYWAAQALLSRVYLNMGEYQKAYDAATDVIKN 231 (477)
T ss_dssp HHHHHHHHHHGGGS-CSSCCTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-cccccCCcCcHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhC
Confidence 34445555555543 322 1223456678999999999999999999999999874
No 305
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=25.18 E-value=1.1e+02 Score=34.36 Aligned_cols=58 Identities=16% Similarity=0.174 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHcCCCCChHHHHHHHHhhCC---C---Ch----HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008887 371 ELIALSVKFLSKGDKERPIPLLQLALNKEP---D---NI----NALILMGQTQLQKGLLEEAVEYLECAIS 431 (550)
Q Consensus 371 ~l~~la~~~~~~g~~~~A~~~~~~aL~~~p---~---~~----~a~~~lg~~~~~~g~~~eA~~~~~~al~ 431 (550)
+++.+|..+...+ +++.+++...+..+. + +. .+-..+|.+|...++- ++.+.+...+.
T Consensus 415 AllaLGli~ag~~--~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~e-ev~e~L~~~L~ 482 (963)
T 4ady_A 415 SLYGLGLIYAGFG--RDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSANI-EVYEALKEVLY 482 (963)
T ss_dssp HHHHHHHHTTTTT--HHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCCH-HHHHHHHHHHH
T ss_pred HHHHHHHhcCCCc--HHHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCCH-HHHHHHHHHHh
Confidence 3334444444333 245666665554332 0 01 2344566666555542 34444444443
No 306
>3myv_A SUSD superfamily protein; RAGB, SUSD and hypothetical proteins, structural genomics, J center for structural genomics, JCSG; HET: MSE; 1.80A {Bacteroides vulgatus}
Probab=24.96 E-value=1.2e+02 Score=30.74 Aligned_cols=34 Identities=15% Similarity=0.075 Sum_probs=29.2
Q ss_pred cccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 008887 487 KAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAH 520 (550)
Q Consensus 487 ~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~ 520 (550)
+.....++..+|++|.-.|++++|.++.++++..
T Consensus 186 r~tk~aa~allarvyL~~~~~~~A~~~a~~vi~~ 219 (454)
T 3myv_A 186 RMNKYAARALLARIYLYHDDNRKAFDLADQLIKD 219 (454)
T ss_dssp SCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred eecHHHHHHHHHHHHHhcccHHHHHHHHHHHHhC
Confidence 3455678999999999999999999999999863
No 307
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=24.30 E-value=99 Score=23.26 Aligned_cols=19 Identities=21% Similarity=0.249 Sum_probs=11.2
Q ss_pred HHhcCCHHHHHHHHHHHHH
Q 008887 501 LCNVGRNAEAEKYLRLAAA 519 (550)
Q Consensus 501 ~~~~g~~~eA~~~l~~al~ 519 (550)
..+.|++++|..+|..+++
T Consensus 21 ~D~~g~y~eAl~lY~~aie 39 (83)
T 2v6y_A 21 ADKEGKVEDAITYYKKAIE 39 (83)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHH
Confidence 3456666666666665543
No 308
>2br9_A 14-3-3E, 14-3-3 protein epsilon; cell regulator protein, 14-3-3, phosphoserine, structural GE consortium, SGC, ywhae; HET: SEP; 1.75A {Homo sapiens} PDB: 3ual_A* 2o98_A* 3m50_A* 3m51_A* 3axy_C*
Probab=24.27 E-value=68 Score=29.59 Aligned_cols=47 Identities=15% Similarity=0.067 Sum_probs=35.6
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHH-HHHHHHhhHHHH
Q 008887 492 DGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNE-LLEQLENNDEEF 538 (550)
Q Consensus 492 ~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~-~~~~l~~~~~~~ 538 (550)
+-...+|.+..+.++|++...+.+++.+.+++... -++.+..+..+.
T Consensus 6 e~~v~~AklaeqaeRyddm~~~mk~v~~~~~eLt~EERnLLsvayKnv 53 (234)
T 2br9_A 6 EDLVYQAKLAEQAERYDEMVESMKKVAGMDVELTVEERNLLSVAYKNV 53 (234)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHH
Confidence 45668899999999999999999999998876544 444445544444
No 309
>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*
Probab=23.88 E-value=5.7e+02 Score=25.72 Aligned_cols=67 Identities=12% Similarity=0.131 Sum_probs=46.1
Q ss_pred ChHHHHHHHHHHHHcC--CCCChHHHHHHHHhh-----CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 008887 368 TPKELIALSVKFLSKG--DKERPIPLLQLALNK-----EPDNINALILMGQTQLQKGLLEEAVEYLECAISKLF 434 (550)
Q Consensus 368 ~~~~l~~la~~~~~~g--~~~~A~~~~~~aL~~-----~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~ 434 (550)
.|-++-++|...-..- ....++.+|.+|+.. ...+.--|..+|-.+++.+++.+|++++.++-....
T Consensus 276 YPmALgnLgDLEe~~pt~gr~~~~~L~~~AI~sa~~~Y~n~HvYPYtYlgGy~yR~~~~reAl~~WA~Aa~Vi~ 349 (550)
T 3u84_A 276 YPMALGNLADLEELEPTPGRPDPLTLYHKGIASAKTYYRDEHIYPYMYLAGYHCRNRNVREALQAWADTATVIQ 349 (550)
T ss_dssp CHHHHHHHHHHHHHSCCTTCCCHHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred CchhhcchhhHhhcCCCCCCCCHHHHHHHHHHHHHHHhccCCccceeecchhhhhcchHHHHHHHHHHHHHHHH
Confidence 3444445554333322 223588888888873 245566778888899999999999999988877743
No 310
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=23.82 E-value=1.2e+02 Score=23.09 Aligned_cols=25 Identities=8% Similarity=-0.081 Sum_probs=17.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHH
Q 008887 408 LMGQTQLQKGLLEEAVEYLECAISK 432 (550)
Q Consensus 408 ~lg~~~~~~g~~~eA~~~~~~al~l 432 (550)
..|.-.-..|++++|+.+|..+++.
T Consensus 21 ~~Ave~D~~g~y~eAl~lY~~Aie~ 45 (86)
T 4a5x_A 21 KRAVELDSESRYPQALVCYQEGIDL 45 (86)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3444446678888888888777766
No 311
>3kez_A Putative sugar binding protein; structural genomics, joint C structural genomics, JCSG, protein structure initiative; 1.90A {Bacteroides vulgatus atcc 8482}
Probab=22.78 E-value=1.3e+02 Score=30.51 Aligned_cols=34 Identities=18% Similarity=0.163 Sum_probs=29.3
Q ss_pred cccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 008887 487 KAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAH 520 (550)
Q Consensus 487 ~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~ 520 (550)
+....-++..+|++|.-.|++++|.++.++++..
T Consensus 192 r~tk~aa~allArvyL~~~~~~~A~~~a~~vi~~ 225 (461)
T 3kez_A 192 KVNRWAAMTLLSRVYLYKGEYNEALTMAENAIKG 225 (461)
T ss_dssp SCCHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred eeeHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 3455678999999999999999999999999863
No 312
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=22.31 E-value=2.7e+02 Score=23.61 Aligned_cols=57 Identities=16% Similarity=0.152 Sum_probs=45.0
Q ss_pred HHHHHHHHcCCCCChHHHHHHHHhhC--CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 008887 374 ALSVKFLSKGDKERPIPLLQLALNKE--PDNINALILMGQTQLQKGLLEEAVEYLECAISK 432 (550)
Q Consensus 374 ~la~~~~~~g~~~~A~~~~~~aL~~~--p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l 432 (550)
.+-..|.. ..+++.+.|+...... -..+..|...|..+...|++++|.+.|+.+++.
T Consensus 72 klWl~ya~--~~~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~ 130 (152)
T 4a1g_A 72 SYCLKFAE--YNSDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQN 130 (152)
T ss_dssp HHHHHHHT--TBSCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHH--hcCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 44444443 3467899999888755 456777888999999999999999999999988
No 313
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=22.17 E-value=1e+02 Score=23.88 Aligned_cols=59 Identities=22% Similarity=0.193 Sum_probs=41.5
Q ss_pred HHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHH--HHHHhcCCHHHHHHHHHHHHH
Q 008887 455 SGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLA--SALCNVGRNAEAEKYLRLAAA 519 (550)
Q Consensus 455 lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La--~~~~~~g~~~eA~~~l~~al~ 519 (550)
.|..++..|+|=+|-+.++..-... +. ........+..+| ..+.+.|+. |...+++++.
T Consensus 7 ~~~~lfn~g~~~eaHEvlE~~W~~~-~~---~~~~~~qGLIq~Ava~~h~~~gn~--a~~ll~~a~~ 67 (94)
T 2cwy_A 7 EVLGLWRAGRYYEVHEVLEPYWLKA-TG---EERRLLQGVILLAAALHQRRLGRP--GLRNLRKAEA 67 (94)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-CH---HHHHHHHHHHHHHHHHHHHHTTCC--CHHHHHHHHH
T ss_pred HHHHHHhCCChHHHHHHHHHHHhhC-CC---chHHHHHHHHHHHHHHHHHHcCcH--HHHHHHHHHH
Confidence 5777888899999999999988764 32 2222234444444 445577887 9999999876
No 314
>1o9d_A 14-3-3-like protein C; protein-binding, fusicoccin, 14-3-3 family, activating drug; HET: TPO; 2.3A {Nicotiana tabacum} SCOP: a.118.7.1 PDB: 1o9c_A* 1o9e_A* 1o9f_A* 3e6y_A*
Probab=21.83 E-value=86 Score=29.39 Aligned_cols=47 Identities=13% Similarity=0.082 Sum_probs=35.5
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCcH-HHHHHHHhhHHHH
Q 008887 492 DGLVVLASALCNVGRNAEAEKYLRLAAAHN--PQYN-ELLEQLENNDEEF 538 (550)
Q Consensus 492 ~~~~~La~~~~~~g~~~eA~~~l~~al~~~--p~~~-~~~~~l~~~~~~~ 538 (550)
+-+..+|.+..+.++|++...+.+++.+.+ ++.. +-++.+..+..+.
T Consensus 9 e~~v~~AkLaeqaeRyddm~~~mk~v~~~~~~~eLt~EERnLLSvaYKNv 58 (260)
T 1o9d_A 9 EENVYMAKLAEQAERYEEMVEFMEKVSNSLGSEELTVEERNLLSVAYKNV 58 (260)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHHHh
Confidence 456788999999999999999999999987 5543 3445555544444
No 315
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=21.82 E-value=5.3e+02 Score=24.62 Aligned_cols=23 Identities=9% Similarity=-0.104 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHH
Q 008887 451 ASQWSGVACIRQEKWEEGIAHLE 473 (550)
Q Consensus 451 a~~~lg~~~~~~g~~~eA~~~~~ 473 (550)
.+..+|..+.+.|++.+|..+|-
T Consensus 136 LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 136 LHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHhhcCCHHHHHHHHH
Confidence 56678999999999999999874
No 316
>2br9_A 14-3-3E, 14-3-3 protein epsilon; cell regulator protein, 14-3-3, phosphoserine, structural GE consortium, SGC, ywhae; HET: SEP; 1.75A {Homo sapiens} PDB: 3ual_A* 2o98_A* 3m50_A* 3m51_A* 3axy_C*
Probab=21.32 E-value=2.5e+02 Score=25.75 Aligned_cols=54 Identities=13% Similarity=-0.031 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHH-hcCHHHHHHHHHHHhc
Q 008887 420 EEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIR-QEKWEEGIAHLERIGN 477 (550)
Q Consensus 420 ~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~-~g~~~eA~~~~~~al~ 477 (550)
+.|.+.|++|.++....-.|++|-. +. ...+.++.|+. .++.++|++..+++++
T Consensus 147 e~a~~aY~~A~~iA~~~L~pthPir---Lg-LaLN~SVF~yEil~~~~~A~~lAk~afd 201 (234)
T 2br9_A 147 ENSLVAYKAASDIAMTELPPTHPIR---LG-LALNFSVFYYEILNSPDRACRLAKAAFD 201 (234)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCHHH---HH-HHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCCCCCcHH---HH-HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4688889999887654557888833 22 22234444444 7999999887776654
No 317
>2yhe_A SEC-alkyl sulfatase; hydrolase, inversion, metallo-beta-lactamase fold; 2.70A {Pseudomonas SP}
Probab=26.78 E-value=20 Score=38.86 Aligned_cols=53 Identities=21% Similarity=0.213 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHH
Q 008887 370 KELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEA 422 (550)
Q Consensus 370 ~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA 422 (550)
+.+.+.|...+..|+|.-|.++.+.++..+|++.++...++.+|.+.|.-.+.
T Consensus 462 ~~~~~~a~~~~~~g~~~wa~~l~~~~~~a~p~~~~ar~l~a~~~~~l~~~~~~ 514 (668)
T 2yhe_A 462 DAVLKQMRAAIDKGDYRWAVQLGNHLVFADPANKDARALQADAMEQLGYQTEN 514 (668)
Confidence 45668888999999999999999999999999999999999999999876654
No 318
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=20.70 E-value=1.3e+02 Score=22.84 Aligned_cols=25 Identities=16% Similarity=0.007 Sum_probs=16.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH
Q 008887 495 VVLASALCNVGRNAEAEKYLRLAAA 519 (550)
Q Consensus 495 ~~La~~~~~~g~~~eA~~~l~~al~ 519 (550)
...|.-+...|++++|..+|..+++
T Consensus 20 v~~Ave~D~~g~y~eAl~lY~~Aie 44 (86)
T 4a5x_A 20 LKRAVELDSESRYPQALVCYQEGID 44 (86)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3444445677888888877777664
No 319
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=20.03 E-value=3.3e+02 Score=21.55 Aligned_cols=49 Identities=14% Similarity=0.134 Sum_probs=33.6
Q ss_pred HHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHH
Q 008887 455 SGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRL 516 (550)
Q Consensus 455 lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~ 516 (550)
....+.++|+|++|....+..- .+ +.--.+|-|-.+.|-.+++...+.+
T Consensus 46 R~sSLmNrG~Yq~Al~l~~~~c------~p-------dlepw~ALce~rlGl~s~le~rL~~ 94 (116)
T 2p58_C 46 RLSSLMNRGDYASALQQGNKLA------YP-------DLEPWLALCEYRLGLGSALESRLNR 94 (116)
T ss_dssp HHHHHHHTTCHHHHHHHHTTSC------CG-------GGHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHcchhHHHHHHhcCCCC------Cc-------hHHHHHHHHHHhcccHHHHHHHHHH
Confidence 4556778899999888776421 12 4555666777888888888776633
Done!