Query 008888
Match_columns 550
No_of_seqs 152 out of 798
Neff 5.0
Searched_HMMs 29240
Date Mon Mar 25 14:03:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008888.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008888hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3gia_A Uncharacterized protein 96.0 0.082 2.8E-06 54.4 13.8 78 41-130 126-208 (444)
2 4djk_A Probable glutamate/gamm 95.6 0.19 6.6E-06 52.6 15.0 102 40-146 130-239 (511)
3 3l1l_A Arginine/agmatine antip 93.5 0.26 8.8E-06 50.6 9.7 80 42-130 127-211 (445)
4 2rdd_B UPF0092 membrane protei 18.4 1.6E+02 0.0054 20.6 4.2 19 320-338 1-19 (37)
5 2iub_A CORA, divalent cation t 16.0 63 0.0022 32.9 2.3 25 185-209 301-325 (363)
6 1nrp_R Receptor based peptide 13.8 62 0.0021 21.0 1.0 17 161-177 4-20 (26)
7 2bm3_A Type 2 cohesin, scaffol 12.3 59 0.002 30.4 0.8 12 87-98 44-55 (166)
8 3kcp_B Cellulosome anchoring p 12.1 60 0.0021 30.8 0.8 12 88-99 57-68 (187)
9 1jl0_A Adometdc, S-adenosylmet 10.2 43 0.0015 34.7 -1.1 34 13-46 50-83 (334)
10 3hbe_X Class IV chitinase CHIA 9.8 52 0.0018 31.7 -0.6 72 134-218 96-170 (204)
No 1
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=95.96 E-value=0.082 Score=54.44 Aligned_cols=78 Identities=15% Similarity=0.106 Sum_probs=44.1
Q ss_pred ehhHHHHHHHHHhhhcccccccccc---chhHHHHHHHHhhHhhHHHhhccCcceeEe-cChHHHHHHhhhcCcce-eee
Q 008888 41 EALSAIILIVLFLMQKFGTSRVSFL---FSPIMGAWTFSTPLVGIYSIIHHYPGIFKA-LSPHYTFHFFWRKGKEG-WLL 115 (550)
Q Consensus 41 vpis~~ILv~LF~iQ~~GT~kvg~~---FgPImlvWF~~l~~~Gi~~I~~~~P~Vl~A-lnP~yai~f~~~~~~~g-~~~ 115 (550)
..+++++++.+..+..+|+...+++ +..+.++=++.+.+.|+.+. +|+-+.. ++|. +..+ +..
T Consensus 126 ~~~~~~~~~~~~~in~~g~~~~~~~~~~~~~~~i~~~~~~ii~~~~~~---~~~~~~~~~~~~---------g~~~~~~~ 193 (444)
T 3gia_A 126 AITEIGIVAFFTALNFFGSKAVGRAEFFIVLVKLLILGLFIFAGLITI---HPSYVIPDLAPS---------AVSGMIFA 193 (444)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---CGGGTSCCCSHH---------HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc---ChhhcCCCCCCc---------chHHHHHH
Confidence 3567788888888999998776665 44444444444445555543 3443221 2222 1111 222
Q ss_pred ecceeeeecchhhhh
Q 008888 116 LGGTVLCITGSEALF 130 (550)
Q Consensus 116 LG~V~L~vTGaEALy 130 (550)
+...+.+.+|-|+.-
T Consensus 194 ~~~~~~a~~G~e~~~ 208 (444)
T 3gia_A 194 SAIFFLSYMGFGVIT 208 (444)
T ss_dssp HHHGGGGGTHHHHHH
T ss_pred HHHHHHHHHhHHHHH
Confidence 344567889999763
No 2
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=95.58 E-value=0.19 Score=52.62 Aligned_cols=102 Identities=17% Similarity=0.107 Sum_probs=53.8
Q ss_pred eehhHHHHHHHHHhhhccccccccccchhH----HHHHHHHhhHhhHHHhhccCcceeEecChHHHHHHhhhc--Cccee
Q 008888 40 VEALSAIILIVLFLMQKFGTSRVSFLFSPI----MGAWTFSTPLVGIYSIIHHYPGIFKALSPHYTFHFFWRK--GKEGW 113 (550)
Q Consensus 40 Vvpis~~ILv~LF~iQ~~GT~kvg~~FgPI----mlvWF~~l~~~Gi~~I~~~~P~Vl~AlnP~yai~f~~~~--~~~g~ 113 (550)
...+++++++.+..+--+|....+++..-. +++-++.+.++|+..+...+|.-.+ .| .+.+..+ +..+|
T Consensus 130 ~~~~~~~~~~~~~~in~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~----~~~~~~~~~~~~~~ 204 (511)
T 4djk_A 130 KTIAALIILWALALTQFGGTKYTARIAKVGFFAGILLPAFILIALAAIYLHSGAPVAIE-MD----SKTFFPDFSKVGTL 204 (511)
T ss_dssp HHHHHHHHHHHHHHHHHTCSSSHHHHTHHHHHHTTHHHHHHHHHHHHHHTC-----------------CCCCCTTSTTTT
T ss_pred HHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccc-Cc----ccccCCCcccchHH
Confidence 456778888888899999988777764322 2223444556677665543332111 01 1111111 12345
Q ss_pred eeecceeeeecchhhhhhccCCCC--ccchhhhhH
Q 008888 114 LLLGGTVLCITGSEALFADLGHFN--RSSIQMAFL 146 (550)
Q Consensus 114 ~~LG~V~L~vTGaEALyADmGHFg--~~~Ir~aW~ 146 (550)
..+..++.+.+|-|+.-.=-+-.- +|.+..+-.
T Consensus 205 ~~~~~~~~a~~G~e~~~~~a~E~k~P~k~ip~ai~ 239 (511)
T 4djk_A 205 VVFVAFILSYMGVEASATHVNEMSNPGRDYPLAML 239 (511)
T ss_dssp TTHHHHHHHHTTGGGGTGGGSSSSCCTTTHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHhccCcccchhHHHH
Confidence 556777889999998644333332 455555544
No 3
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=93.50 E-value=0.26 Score=50.60 Aligned_cols=80 Identities=11% Similarity=0.069 Sum_probs=38.6
Q ss_pred hhHHHHHHHHHhhhcccccccccc---chhHHHHHHHHhhHhhHHHhhccCccee-EecChHHHHHHhhhcCcce-eeee
Q 008888 42 ALSAIILIVLFLMQKFGTSRVSFL---FSPIMGAWTFSTPLVGIYSIIHHYPGIF-KALSPHYTFHFFWRKGKEG-WLLL 116 (550)
Q Consensus 42 pis~~ILv~LF~iQ~~GT~kvg~~---FgPImlvWF~~l~~~Gi~~I~~~~P~Vl-~AlnP~yai~f~~~~~~~g-~~~L 116 (550)
.+++++++.+..+--+|....+++ +.++.++=++.+.+.|+. ..+|+.+ ..++|.-.- +..+ +..+
T Consensus 127 ~~~~~~~~~~~~in~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~---~~~~~~~~~~~~~~~~~------~~~~~~~~~ 197 (445)
T 3l1l_A 127 ITCVVVLWIFVLLNIVGPKMITRVQAVATVLALIPIVGIAVFGWF---WFRGETYMAAWNVSGLG------TFGAIQSTL 197 (445)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHTTST---TCCCCCCCCC-----------------HHHHH
T ss_pred HHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhChhhcccccCccCCc------cHHHHHHHH
Confidence 356667777778888888777776 444433333333333433 2345433 234442110 0111 2233
Q ss_pred cceeeeecchhhhh
Q 008888 117 GGTVLCITGSEALF 130 (550)
Q Consensus 117 G~V~L~vTGaEALy 130 (550)
..++.+.+|-|+.-
T Consensus 198 ~~~~~af~G~e~~~ 211 (445)
T 3l1l_A 198 NVTLWSFIGVESAS 211 (445)
T ss_dssp HHHHHTTTTTTHHH
T ss_pred HHHHHHHHhHHHHH
Confidence 44567778888753
No 4
>2rdd_B UPF0092 membrane protein YAJC; drug resistance, multidrug efflux, transporter, antiporter, novel transmembrane helix, ACRB, inner membrane; HET: AIC; 3.50A {Escherichia coli}
Probab=18.43 E-value=1.6e+02 Score=20.56 Aligned_cols=19 Identities=5% Similarity=0.057 Sum_probs=10.0
Q ss_pred CcchHHHHHHHhhhhhhhh
Q 008888 320 GGWIPFAISFFLAFIMFGW 338 (550)
Q Consensus 320 GGW~pl~ia~~l~~iM~tW 338 (550)
|||..++.-++++.+||..
T Consensus 1 ~~~~~~l~~v~~~~ifYFl 19 (37)
T 2rdd_B 1 SPMSLILMLVVFGLIFYFM 19 (37)
T ss_dssp CCCHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHH
Confidence 4555555555555555433
No 5
>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A
Probab=15.96 E-value=63 Score=32.89 Aligned_cols=25 Identities=12% Similarity=0.303 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHhhhhhhhchhhH
Q 008888 185 WPIFIIATLAAIVASQSLISATFSV 209 (550)
Q Consensus 185 ~P~vilAtlAtIIASQA~ISG~FSl 209 (550)
--|=+|+.+|+|.+==.+|+|.|.+
T Consensus 301 ~imk~LTiit~IflP~T~IaGiyGM 325 (363)
T 2iub_A 301 EVMKVLTIIATIFMPLTFIAGIYGM 325 (363)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 3566888888888888899998875
No 6
>1nrp_R Receptor based peptide NR'S; serine proteinase/receptor; 3.00A {Homo sapiens} PDB: 1nrn_R 1nrq_R*
Probab=13.82 E-value=62 Score=20.98 Aligned_cols=17 Identities=35% Similarity=0.903 Sum_probs=14.3
Q ss_pred hhhhhcCCCcccccccc
Q 008888 161 TAYLIRHPNDHEDGFYK 177 (550)
Q Consensus 161 gA~ll~~p~~~~npFf~ 177 (550)
-++|++||++.-.||+.
T Consensus 4 rsfllrnpndkyepfwe 20 (26)
T 1nrp_R 4 RSFLLRNPNDKYEPFWE 20 (26)
T ss_pred hhhhhcCCCcccCcccc
Confidence 35789999999999985
No 7
>2bm3_A Type 2 cohesin, scaffolding dockerin binding protein A; cellulosome, nuclear protein; 1.8A {Clostridium thermocellum} SCOP: b.2.2.2
Probab=12.35 E-value=59 Score=30.38 Aligned_cols=12 Identities=25% Similarity=0.431 Sum_probs=8.9
Q ss_pred ccCcceeEecCh
Q 008888 87 HHYPGIFKALSP 98 (550)
Q Consensus 87 ~~~P~Vl~AlnP 98 (550)
+|||+||+|.||
T Consensus 44 KYDP~VLqaVn~ 55 (166)
T 2bm3_A 44 VYDPKVLMAVDP 55 (166)
T ss_dssp ECCTTTEEEECT
T ss_pred EECccceEeecC
Confidence 367888888777
No 8
>3kcp_B Cellulosome anchoring protein, cohesin region; dockerin, X-module, carbohydrate metabolism, cell WALL biogenesis/degradation; 1.94A {Clostridium thermocellum atcc 27405} SCOP: b.2.2.2 PDB: 3p0d_B 2b59_A 4fl4_B
Probab=12.15 E-value=60 Score=30.76 Aligned_cols=12 Identities=25% Similarity=0.498 Sum_probs=8.0
Q ss_pred cCcceeEecChH
Q 008888 88 HYPGIFKALSPH 99 (550)
Q Consensus 88 ~~P~Vl~AlnP~ 99 (550)
|||+||.|+||-
T Consensus 57 YDP~VLqaV~p~ 68 (187)
T 3kcp_B 57 YDPKVLMAVDPE 68 (187)
T ss_dssp CCTTTEEEECTT
T ss_pred EChhHeeecccC
Confidence 567777777664
No 9
>1jl0_A Adometdc, S-adenosylmethionine decarboxylase proenzyme; spermidine biosynthesis, lyase, pyruvate, sandwich, allosteric enzyme, pyruvoyl; 1.50A {Homo sapiens} SCOP: d.156.1.1 PDB: 1msv_A 1i7b_A* 1i79_A* 1i72_A* 1i7c_A* 1i7m_A* 3dz6_A* 3dz2_A* 3dz5_A* 3dz4_A* 3dz7_A* 3h0w_A* 3h0v_A* 1jen_A 3dz3_A* 3ep9_A 3ep6_A* 3ep3_A* 3ep8_A* 3ep5_A* ...
Probab=10.18 E-value=43 Score=34.66 Aligned_cols=34 Identities=12% Similarity=0.087 Sum_probs=31.3
Q ss_pred eeeeeecCcccceeeeecccccccCceeehhHHH
Q 008888 13 NIFSVISSPEVDSFWFSTLLVYDISALVEALSAI 46 (550)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Vvpis~~ 46 (550)
.|.|.+|+.++|+++.|-|-++...+.++..||.
T Consensus 50 ~IlS~~sn~~~DAYvLSESSLFV~~~kiIlKTCG 83 (334)
T 1jl0_A 50 SIISVTKTDKQEAYVLSESSMFVSKRRFILKTCG 83 (334)
T ss_dssp CEEEEEECSSEEEEEECCCCEEEESSEEEEEECT
T ss_pred EEEEeecccccceEEeccceeeEECCEEEEEeCC
Confidence 4889999999999999999999999999988873
No 10
>3hbe_X Class IV chitinase CHIA4-PA2; endochitinase, family 19, conformational changes, chitin-binding, glycosidase, hydrolase; 1.55A {Picea abies} SCOP: d.2.1.0 PDB: 3hbd_A 3hbh_A
Probab=9.76 E-value=52 Score=31.73 Aligned_cols=72 Identities=14% Similarity=0.224 Sum_probs=37.5
Q ss_pred CCCCccchhhhhHHHHHHHHHHhcccchhhhhcCCCccc-ccccccccccchHHHHHHHHHHHHHhhhhhh--hchhhHH
Q 008888 134 GHFNRSSIQMAFLFTIYPSLVLTYAGQTAYLIRHPNDHE-DGFYKFIPKSVYWPIFIIATLAAIVASQSLI--SATFSVI 210 (550)
Q Consensus 134 GHFg~~~Ir~aW~~~V~PaLiLnY~GQgA~ll~~p~~~~-npFf~~~P~~~~~P~vilAtlAtIIASQA~I--SG~FSl~ 210 (550)
...||.+||++|=.=--++ =.++|+ =|++||+.+. ||-+.......+|= + .. ....++ .+-|..+
T Consensus 96 ~Y~GRG~IQLTg~~NY~~~--g~~lg~--Dll~nPdlva~dp~~a~~sA~wfW~-----t-~~--~~~~~~~~~~gfg~t 163 (204)
T 3hbe_X 96 SYHGRGPLQLSWNYNYGAA--GKSIGF--DGLNNPEKVGQDSTISFKTAVWFWM-----K-NS--NCHSAITSGQGFGGT 163 (204)
T ss_dssp CCCCBTTTTBCSHHHHHHH--HHHHTS--CTTTCGGGGGTCHHHHHHHHHHHHH-----H-SS--SHHHHHTTTCHHHHH
T ss_pred cccCCCceecccHHHHHHH--HHHhCC--ccccCHHHHhhCHHHHHHHHHhhhc-----c-CC--CHHHHhccCCCHHHH
Confidence 5899999999998611111 112233 2678888775 56443322222221 0 00 011122 3567778
Q ss_pred HHHHhcCC
Q 008888 211 KQSVVLDY 218 (550)
Q Consensus 211 ~QAi~Lg~ 218 (550)
-++|+ |.
T Consensus 164 t~~IN-G~ 170 (204)
T 3hbe_X 164 IKAIN-SM 170 (204)
T ss_dssp HHHHH-GG
T ss_pred HHHHh-cc
Confidence 88887 63
Done!