Query 008888
Match_columns 550
No_of_seqs 152 out of 798
Neff 5.0
Searched_HMMs 13730
Date Mon Mar 25 14:03:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008888.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/008888hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2yvxa3 f.57.1.1 (A:276-448) M 16.3 39 0.0029 29.3 3.0 116 151-279 12-129 (173)
2 d1jl0a_ d.156.1.1 (A:) S-adeno 14.7 12 0.00087 36.2 -1.1 42 13-54 46-87 (325)
3 g1mhm.1 d.156.1.1 (B:,A:) S-ad 13.8 14 0.0011 35.5 -0.7 33 13-45 41-73 (323)
4 d1jb0i_ f.23.17.1 (I:) Subunit 11.1 8.5 0.00062 25.8 -2.4 21 235-255 13-33 (38)
5 d2e74h1 f.23.27.1 (H:3-29) Pet 10.5 62 0.0045 19.7 1.7 20 321-340 5-24 (27)
6 d2h8pc1 f.14.1.1 (C:22-78) Pot 10.1 59 0.0043 23.3 1.9 41 150-192 14-54 (57)
7 d2bm3a1 b.2.2.2 (A:5-166) Scaf 9.1 42 0.0031 29.1 0.8 12 88-99 41-52 (162)
8 d1vlfn1 b.3.5.1 (N:196-274) Tr 7.3 1.9E+02 0.014 21.2 3.9 27 418-445 35-62 (79)
9 d1tyja1 b.2.2.2 (A:2-171) Cell 6.8 52 0.0038 28.7 0.2 9 89-97 40-48 (170)
10 d2a65a1 f.54.1.1 (A:5-513) Na( 6.0 4E+02 0.029 25.5 6.7 51 298-349 379-432 (509)
No 1
>d2yvxa3 f.57.1.1 (A:276-448) Mg2+ transporter MgtE {Thermus thermophilus [TaxId: 274]}
Probab=16.32 E-value=39 Score=29.33 Aligned_cols=116 Identities=10% Similarity=0.075 Sum_probs=68.8
Q ss_pred HHHHHhcccc--hhhhhcCCCcccccccccccccchHHHHHHHHHHHHHhhhhhhhchhhHHHHHHhcCCCccceEEecC
Q 008888 151 PSLVLTYAGQ--TAYLIRHPNDHEDGFYKFIPKSVYWPIFIIATLAAIVASQSLISATFSVIKQSVVLDYFPRVKVVHTS 228 (550)
Q Consensus 151 PaLiLnY~GQ--gA~ll~~p~~~~npFf~~~P~~~~~P~vilAtlAtIIASQA~ISG~FSl~~QAi~Lg~~Pr~~I~hTS 228 (550)
|-|++|.+|+ .|.++++-|+.-+-+-.+ ..+.|+ ++.++.-.+||+. +++-+++++|..-+-+..
T Consensus 12 pWL~i~l~~~~~~a~ii~~Fe~~l~~~~~L---a~fiPl--i~~~gGN~G~Qs~-----ti~iR~La~g~i~~~~~~--- 78 (173)
T d2yvxa3 12 RWLVILILTGMVTSSILQGFESVLEAVTAL---AFYVPV--LLGTGGNTGNQSA-----TLIIRALATRDLDLRDWR--- 78 (173)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCTTTTTTTSC---CCCSHH--HHHHHHHHHHHHH-----HHHHHHHHTTCSCSSSHH---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH--HhcCCchHHHHHH-----HHHHHHHhcccccchhHH---
Confidence 3444555544 456665544332211111 245665 5678888899987 588999999964321111
Q ss_pred CCCCCcccchhhHHHHHHHhheeEEEeCCcchhhhhhhhhhHHHHHHHHHH
Q 008888 229 SNKEGEVYSPEVNYILMILCVAVILIFGEGKDIGNAFGVVVSLVMLITTIL 279 (550)
Q Consensus 229 ~~~~GQIYIP~vNwlL~i~~i~vvl~F~~S~~La~AYGiAVt~tM~iTT~L 279 (550)
+...-++.+-.+|-+.+...+.....+++...++.+=|++....|++.+++
T Consensus 79 ~~l~kE~~vgll~G~~l~~i~~~~~~~~~~~~l~~vi~~sl~~~~~ia~~~ 129 (173)
T d2yvxa3 79 RVFLKEMGVGLLLGLTLSFLLVGKVYWDGHPLLLPVVGVSLVLIVFFANLV 129 (173)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHH
Confidence 112244677788877766666555556666667666666666666666654
No 2
>d1jl0a_ d.156.1.1 (A:) S-adenosylmethionine decarboxylase {Human (Homo sapiens) [TaxId: 9606]}
Probab=14.71 E-value=12 Score=36.19 Aligned_cols=42 Identities=12% Similarity=0.110 Sum_probs=35.2
Q ss_pred eeeeeecCcccceeeeecccccccCceeehhHHHHHHHHHhh
Q 008888 13 NIFSVISSPEVDSFWFSTLLVYDISALVEALSAIILIVLFLM 54 (550)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Vvpis~~ILv~LF~i 54 (550)
-|.|.+|+.++|+++.|-|-++...+.++..||+-..+|.++
T Consensus 46 ~IlS~~sn~~~DAYlLSESSLFV~~~kiiLkTCGTTtLL~~l 87 (325)
T d1jl0a_ 46 SIISVTKTDKQEAYVLSESSMFVSKRRFILKTCGTTLLLKAL 87 (325)
T ss_dssp CEEEEEECSSEEEEEECCCCEEEESSEEEEEECTTCCGGGGH
T ss_pred EEEEeecccccceEEeechhhheeCCeEEEEECCCccHHHHH
Confidence 488999999999999999999999999999998544444443
No 3
>g1mhm.1 d.156.1.1 (B:,A:) S-adenosylmethionine decarboxylase {Potato (Solanum tuberosum) [TaxId: 4113]}
Probab=13.81 E-value=14 Score=35.53 Aligned_cols=33 Identities=21% Similarity=0.209 Sum_probs=30.5
Q ss_pred eeeeeecCcccceeeeecccccccCceeehhHH
Q 008888 13 NIFSVISSPEVDSFWFSTLLVYDISALVEALSA 45 (550)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Vvpis~ 45 (550)
.|.|.+|+.++|+++.|-|-.+...+.++..||
T Consensus 41 ~IlS~~sn~~~DAYlLSESSLFV~~~kiiLkTC 73 (323)
T g1mhm.1 41 TIVDNLSNDYVDSYVLSEXSLFVYSYKIIIKTC 73 (323)
T ss_dssp EEEEEEECSSCEEEEEEC-CEEEETTEEEEEEE
T ss_pred EEEEeecccccceEEeecceeeEecCEEeeeec
Confidence 589999999999999999999999999999998
No 4
>d1jb0i_ f.23.17.1 (I:) Subunit VIII of photosystem I reaction centre, PsaI {Synechococcus elongatus [TaxId: 32046]}
Probab=11.12 E-value=8.5 Score=25.83 Aligned_cols=21 Identities=10% Similarity=0.616 Sum_probs=16.1
Q ss_pred ccchhhHHHHHHHhheeEEEe
Q 008888 235 VYSPEVNYILMILCVAVILIF 255 (550)
Q Consensus 235 IYIP~vNwlL~i~~i~vvl~F 255 (550)
|.||.+-|++-+-++.+....
T Consensus 13 I~iPvv~wl~p~vvMglLFiy 33 (38)
T d1jb0i_ 13 IFIPVVCWLMPTVVMGLLFLY 33 (38)
T ss_dssp HHHHHHHTHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhee
Confidence 789999999988777655443
No 5
>d2e74h1 f.23.27.1 (H:3-29) PetN subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=10.52 E-value=62 Score=19.69 Aligned_cols=20 Identities=25% Similarity=0.715 Sum_probs=13.0
Q ss_pred cchHHHHHHHhhhhhhhhhh
Q 008888 321 GWIPFAISFFLAFIMFGWFN 340 (550)
Q Consensus 321 GW~pl~ia~~l~~iM~tW~~ 340 (550)
||+.|+.-.--..-|..|-+
T Consensus 5 gwv~llvvftwsiamvvwgr 24 (27)
T d2e74h1 5 GWVALLVVFTWSIAMVVWGR 24 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHT
T ss_pred hHhHHHHHhhheeeeEEEcc
Confidence 67777766666666666643
No 6
>d2h8pc1 f.14.1.1 (C:22-78) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}
Probab=10.14 E-value=59 Score=23.32 Aligned_cols=41 Identities=17% Similarity=0.195 Sum_probs=26.5
Q ss_pred HHHHHHhcccchhhhhcCCCcccccccccccccchHHHHHHHH
Q 008888 150 YPSLVLTYAGQTAYLIRHPNDHEDGFYKFIPKSVYWPIFIIAT 192 (550)
Q Consensus 150 ~PaLiLnY~GQgA~ll~~p~~~~npFf~~~P~~~~~P~vilAt 192 (550)
+-++++--++=+.|+..++...+ =|.++|+.+.|-.+-+.|
T Consensus 14 ~~~i~i~~~s~~~y~~E~~~~~~--~f~sip~a~WWaivT~TT 54 (57)
T d2h8pc1 14 LLVIVLLAGSYLAVLAERGAPGA--QLITYPRALWWACETATT 54 (57)
T ss_dssp HHHHHHHHHHHHHHHHHTTSTTC--CCCSHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHhcCCCCc--cccccchhhhhheeeeec
Confidence 33444444566667777655333 399999999998775543
No 7
>d2bm3a1 b.2.2.2 (A:5-166) Scaffolding dockerin binding protein A, SdbA {Clostridium thermocellum [TaxId: 1515]}
Probab=9.09 E-value=42 Score=29.06 Aligned_cols=12 Identities=25% Similarity=0.498 Sum_probs=7.4
Q ss_pred cCcceeEecChH
Q 008888 88 HYPGIFKALSPH 99 (550)
Q Consensus 88 ~~P~Vl~AlnP~ 99 (550)
|||+||+|.||.
T Consensus 41 YDP~vLQ~Vn~~ 52 (162)
T d2bm3a1 41 YDPKVLMAVDPE 52 (162)
T ss_dssp CCTTTEEEECTT
T ss_pred eCHHHhcccccC
Confidence 566666666654
No 8
>d1vlfn1 b.3.5.1 (N:196-274) Transhydroxylase beta subunit, BthL, C-terminal domain {Pelobacter acidigallici [TaxId: 35816]}
Probab=7.34 E-value=1.9e+02 Score=21.22 Aligned_cols=27 Identities=19% Similarity=0.142 Sum_probs=22.8
Q ss_pred CCCceEEEEEecCCCEEEEEEEE-eeecc
Q 008888 418 APEERIIVRKLGLKGVYGCVIQY-GYADT 445 (550)
Q Consensus 418 ~~~eR~~v~~~~~~g~~rv~~ry-Gf~e~ 445 (550)
+++=+|.++.+. +|-|.+.+++ ||...
T Consensus 35 d~~G~F~f~~l~-~G~Y~l~is~~Gy~~~ 62 (79)
T d1vlfn1 35 NFFGEFKFDALD-NGEYTVEIDADGKSYS 62 (79)
T ss_dssp CTTSEEEEEEEC-SEEEEEEEEETTEEEE
T ss_pred CCCCcEEEEecC-CCCEEEEEEEecccce
Confidence 456779999998 8999999998 88754
No 9
>d1tyja1 b.2.2.2 (A:2-171) Cellulosomal scaffoldin ScaA {Bacteroides cellulosolvens [TaxId: 35825]}
Probab=6.79 E-value=52 Score=28.65 Aligned_cols=9 Identities=0% Similarity=0.021 Sum_probs=3.3
Q ss_pred CcceeEecC
Q 008888 89 YPGIFKALS 97 (550)
Q Consensus 89 ~P~Vl~Aln 97 (550)
||+||+|.|
T Consensus 40 DP~vLQ~V~ 48 (170)
T d1tyja1 40 NTTYLQPWD 48 (170)
T ss_dssp CTTTEEEEE
T ss_pred ChHHeeccc
Confidence 333333333
No 10
>d2a65a1 f.54.1.1 (A:5-513) Na(+):neurotransmitter symporter homologue LeuT {Aquifex aeolicus [TaxId: 63363]}
Probab=6.04 E-value=4e+02 Score=25.46 Aligned_cols=51 Identities=24% Similarity=0.237 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHhhccccC---CcchHHHHHHHhhhhhhhhhhhHHHHHHHH
Q 008888 298 YFLVFFTMEGVYVSAVFTKIPE---GGWIPFAISFFLAFIMFGWFNGRQKKIEYE 349 (550)
Q Consensus 298 ~~~~F~~id~~ff~anl~K~~~---GGW~pl~ia~~l~~iM~tW~~G~~~~~~~~ 349 (550)
..+.++..=+.+++.+.....| ++ +.+.+.+++-++...|.+|.++..+..
T Consensus 379 ~~~~~~~~~~~~~~~~~~~~~D~~~~~-~~l~~~~l~e~i~v~w~yg~~r~~~di 432 (509)
T d2a65a1 379 AAIVFFSAHLVMFLNKSLDEMDFWAGT-IGVVFFGLTELIIFFWIFGADKAWEEI 432 (509)
T ss_dssp HHHHHHHHHHHHHBTTHHHHHHHHTTT-HHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred eEEEEhhhhHHHHhcchHHHHHHHHHH-HHHHHHHHHHHheeeeEecHHHHHHHH
Confidence 3333444444444444333322 34 466777788889999999998776543
Done!