Your job contains 1 sequence.
>008889
MSVLNNVDEQTVRSLNGCRVADQILKHVPNVEHFRMTLRCLKFWAKRRGVYSNVTGFLGG
VNWALLVARVCQLYPNAIPSMLVSRFFRVYTQWRWPNPVMLCPIEEDELGFSVWDPRKNP
RDRSHHMPIITPAYPCMNSSYNVSLSTLRVMTEQFQWGNRICEEIELNKAQWSALFEPYL
FFEAYKNYLQVDIVAADADDLLTWKGWVESRFRQLTLKIERDTNGLLQCHPYPNEYIDPS
KPCPNSAFFMGLRRKEGVTGKERQQFDIRGTVDNFREEIGMYMFWKPGMDIYVSHVRRRQ
LPSFVFPDGYKRPRPSRHFNEQAGKPCEDVKMCQSGSSGRHLKREKEHEMEEVRPDKSVK
RASISSEVPQPVSPGKTTGDSTNDSEVMSAGGHLVSEKDTMAAHMQLDGIVNHESVALNE
QKCTLVDDLSVINNESESSDLAEPSKPGLLGRCEIHSVDTVSSGSLLNVKGVAIKVDQEL
VKPCNQMTVVEVAGREYESKSCTQNLSCEGDDCVASLDTLSENGCLNSCEVFHNSLTEEL
EPSSTLGATV
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 008889
(550 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2134113 - symbol:nPAP "nuclear poly(a) polymer... 1546 1.1e-158 1
TAIR|locus:2043560 - symbol:PAPS2 "poly(A) polymerase 2" ... 1472 2.0e-158 2
TAIR|locus:2030943 - symbol:PAPS1 "poly(A) polymerase 1" ... 1132 8.2e-115 1
DICTYBASE|DDB_G0288259 - symbol:papA "poly(A) polymerase"... 732 8.5e-75 2
UNIPROTKB|P25500 - symbol:PAPOLA "Poly(A) polymerase alph... 713 1.6e-73 2
UNIPROTKB|P51003 - symbol:PAPOLA "Poly(A) polymerase alph... 709 3.2e-73 2
UNIPROTKB|F1PDS0 - symbol:PAPOLA "Uncharacterized protein... 707 4.1e-73 2
MGI|MGI:109301 - symbol:Papola "poly (A) polymerase alpha... 708 1.4e-72 2
UNIPROTKB|G3MYA2 - symbol:PAPOLA "Poly(A) polymerase alph... 713 2.1e-70 1
UNIPROTKB|Q3T0A2 - symbol:PAPOLA "Poly(A) polymerase alph... 713 2.1e-70 1
UNIPROTKB|G3XAH6 - symbol:PAPOLA "Poly(A) polymerase alph... 709 5.5e-70 1
UNIPROTKB|F1SQL7 - symbol:PAPOLG "Uncharacterized protein... 678 1.6e-69 2
UNIPROTKB|F1SAQ7 - symbol:PAPOLA "Uncharacterized protein... 704 1.8e-69 1
UNIPROTKB|I3L6F0 - symbol:PAPOLA "Uncharacterized protein... 704 1.8e-69 1
UNIPROTKB|F1NDP1 - symbol:PAPOLA "Uncharacterized protein... 702 3.0e-69 1
UNIPROTKB|F1NKG9 - symbol:PAPOLA "Uncharacterized protein... 702 3.0e-69 1
UNIPROTKB|Q9BWT3 - symbol:PAPOLG "Poly(A) polymerase gamm... 681 3.3e-69 2
ZFIN|ZDB-GENE-040426-1256 - symbol:papolg "poly(A) polyme... 698 8.0e-69 1
MGI|MGI:2442119 - symbol:Papolg "poly(A) polymerase gamma... 679 8.7e-69 2
RGD|1310946 - symbol:Papolb "poly (A) polymerase beta (te... 691 4.4e-68 1
MGI|MGI:1932115 - symbol:Papolb "poly (A) polymerase beta... 686 1.5e-67 1
UNIPROTKB|Q9NRJ5 - symbol:PAPOLB "Poly(A) polymerase beta... 685 1.9e-67 1
ZFIN|ZDB-GENE-030131-3507 - symbol:papola "poly(A) polyme... 685 1.9e-67 1
RGD|1310337 - symbol:Papolg "poly(A) polymerase gamma" sp... 682 4.0e-67 1
UNIPROTKB|I3LRR6 - symbol:PAPOLB "Uncharacterized protein... 681 5.1e-67 1
UNIPROTKB|A5D7N5 - symbol:PAPOLG "Uncharacterized protein... 678 1.1e-66 1
UNIPROTKB|J9NS30 - symbol:PAPOLG "Uncharacterized protein... 673 3.6e-66 1
FB|FBgn0015949 - symbol:hrg "hiiragi" species:7227 "Droso... 596 1.4e-64 2
UNIPROTKB|F1NL95 - symbol:F1NL95 "Uncharacterized protein... 633 6.2e-62 1
UNIPROTKB|F1P3A1 - symbol:F1P3A1 "Uncharacterized protein... 633 6.2e-62 1
POMBASE|SPBC646.04 - symbol:pla1 "poly(A) polymerase Pla1... 589 4.2e-61 2
GENEDB_PFALCIPARUM|PFF1240w - symbol:PFF1240w "poly(A) po... 493 8.8e-59 2
UNIPROTKB|C6KT92 - symbol:PFF1240w "Poly(A) polymerase PA... 493 8.8e-59 2
WB|WBGene00009658 - symbol:F43G6.5 species:6239 "Caenorha... 595 6.6e-58 1
SGD|S000001710 - symbol:PAP1 "Poly(A) polymerase, one of ... 580 2.5e-56 1
WB|WBGene00012528 - symbol:pap-1 species:6239 "Caenorhabd... 578 4.2e-56 1
UNIPROTKB|Q9U2P3 - symbol:pap-1 "Protein PAP-1" species:6... 578 4.2e-56 1
CGD|CAL0002451 - symbol:PAP1 species:5476 "Candida albica... 566 7.8e-55 1
UNIPROTKB|Q9UW26 - symbol:PAPA "Poly(A) polymerase PAPa" ... 566 7.8e-55 1
WB|WBGene00011791 - symbol:T15H9.6 species:6239 "Caenorha... 566 7.8e-55 1
UNIPROTKB|Q09995 - symbol:T15H9.6 "Protein T15H9.6" speci... 566 7.8e-55 1
UNIPROTKB|G3V2A0 - symbol:PAPOLA "Poly(A) polymerase alph... 480 5.3e-49 2
RGD|1308673 - symbol:Papola "poly (A) polymerase alpha" s... 412 6.0e-41 2
UNIPROTKB|H0YJ00 - symbol:PAPOLA "Poly(A) polymerase alph... 412 1.6e-38 1
TAIR|locus:2084274 - symbol:PAPS3 "poly(A) polymerase 3" ... 406 7.0e-38 1
UNIPROTKB|D4A764 - symbol:Papola "Protein Papola" species... 335 2.7e-33 2
UNIPROTKB|F8WAT4 - symbol:PAPOLG "Poly(A) polymerase gamm... 324 1.1e-28 1
UNIPROTKB|G4N5I8 - symbol:MGG_06121 "Uncharacterized prot... 175 1.9e-09 1
UNIPROTKB|Q59G05 - symbol:PAPOLG "Poly(A) polymerase gamm... 169 2.5e-09 2
UNIPROTKB|F1PYB9 - symbol:PAPOLG "Uncharacterized protein... 166 2.9e-09 1
>TAIR|locus:2134113 [details] [associations]
symbol:nPAP "nuclear poly(a) polymerase" species:3702
"Arabidopsis thaliana" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0004652 "polynucleotide adenylyltransferase activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM;IDA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0016779
"nucleotidyltransferase activity" evidence=IEA;ISS] [GO:0031123
"RNA 3'-end processing" evidence=IEA] [GO:0043631 "RNA
polyadenylation" evidence=IEA;IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0000911 "cytokinesis by cell plate formation"
evidence=RCA] [GO:0000956 "nuclear-transcribed mRNA catabolic
process" evidence=RCA] [GO:0006623 "protein targeting to vacuole"
evidence=RCA] [GO:0006944 "cellular membrane fusion" evidence=RCA]
[GO:0016192 "vesicle-mediated transport" evidence=RCA]
InterPro:IPR002934 InterPro:IPR007010 InterPro:IPR007012
InterPro:IPR011068 InterPro:IPR014492 Pfam:PF01909 Pfam:PF04926
Pfam:PF04928 PIRSF:PIRSF018425 GO:GO:0005634 EMBL:CP002687
GO:GO:0006351 GO:GO:0003723 GO:GO:0004652 GO:GO:0043631 KO:K14376
Gene3D:3.30.70.590 SUPFAM:SSF55003 IPI:IPI00656923
RefSeq:NP_001031779.1 UniGene:At.25084 ProteinModelPortal:F4JV63
SMR:F4JV63 PRIDE:F4JV63 EnsemblPlants:AT4G32850.8 GeneID:829421
KEGG:ath:AT4G32850 OMA:EDQLEWC PhylomeDB:F4JV63 Uniprot:F4JV63
Length = 765
Score = 1546 (549.3 bits), Expect = 1.1e-158, P = 1.1e-158
Identities = 328/554 (59%), Positives = 381/554 (68%)
Query: 2 SVLNNVDEQTVRSLNGCRVADQILKHVPNVEHFRMTLRCLKFWAKRRGVYSNVTGFLGGV 61
SVL VDE TVRSLNGCRVADQILK VPN EHFR TLRCLK+WAK+RGVYSNVTGFLGGV
Sbjct: 190 SVLCEVDEPTVRSLNGCRVADQILKLVPNFEHFRTTLRCLKYWAKKRGVYSNVTGFLGGV 249
Query: 62 NWALLVARVCQLYPNAIPSMLVSRFFRVYTQWRWPNPVMLCPIEEDELGFSVWDPRKNPR 121
NWALLVARVCQLYPNAIPSMLVSRFFRVYTQWRWPNPVMLC IEEDELGF VWD RKN R
Sbjct: 250 NWALLVARVCQLYPNAIPSMLVSRFFRVYTQWRWPNPVMLCAIEEDELGFPVWDRRKNHR 309
Query: 122 DRSHHMPIITPAYPCMNSSYNVSLSTLRVMTEQFQWGNRICEEIELNKAQWSALFEPYLF 181
DR H MPIITPAYPCMNSSYNVS STLRVMTEQFQ+GN I +EIELNK WS+LFE Y+F
Sbjct: 310 DRYHLMPIITPAYPCMNSSYNVSQSTLRVMTEQFQFGNNILQEIELNKQHWSSLFEQYMF 369
Query: 182 FEAYKNYLQVDIVXXXXXXLLTWKGWVESRFRQLTLKIERDTNGLLQCHPYPNEYIDPSK 241
FEAYKNYLQVDIV LL WKGWVESRFRQLTLKIERDTNG+L CHP PNEY+D ++
Sbjct: 370 FEAYKNYLQVDIVAADAEDLLAWKGWVESRFRQLTLKIERDTNGMLMCHPQPNEYVDTAR 429
Query: 242 PCPNSAFFMGLRRKEGVTGKERQQFDIRGTVDNFREEIGMYMFWKPGMDIYVSHVRRRQL 301
+ AFFMGL+R EGV G+E QQFDIRGTVD FR+E+ MYMFWKPGMD++VSHVRRRQL
Sbjct: 430 QFLHCAFFMGLQRAEGVGGQECQQFDIRGTVDEFRQEVNMYMFWKPGMDVFVSHVRRRQL 489
Query: 302 PSFVFPDGYKRPRPSRHFNEQAGKPCEDVKMCQSGSS-GRHLKREKEHEMEEVRPDKSVK 360
P FVFP+GY+RPR SRH N GK ED + SGS RH KR+ + EM +VRP+K K
Sbjct: 490 PPFVFPNGYRRPRQSRHQNLPGGKSGEDGSVSHSGSVVERHAKRKNDSEMMDVRPEKPEK 549
Query: 361 RASISSEVPQPVSPGK---TTGDSTNDSEVMSAGGHLVSEKDTMAAHMQLDGIVNHESVA 417
RAS+S + VSP TTG + + + + +L + +E +
Sbjct: 550 RASLSPQSLDIVSPENSAITTGWTPPVCNLRRPPSEEIEADNLNTECTELTDLARNECNS 609
Query: 418 LNEQKCTLVDDLSVINNESESSDLAEPSKPGLLGRCEI-HSVDTVSSGSLLNVKGVAIKV 476
+EQ VD ++V+ E SD AEP LG+C SVD V+ V G +
Sbjct: 610 GSEQVLE-VDSMAVVQ---ECSDPAEP-----LGKCVTPDSVDVVAC-----VSGQEENL 655
Query: 477 DQELVKPCNQMTVVEVAGREYESKSCTQNLSCEG-------DDCVASLDTLSENGCLNSC 529
D+ L +++ S+SC QN EG D + + S++G S
Sbjct: 656 DRNL----RSVSISGTDSPLLPSRSCGQNRDYEGFGFPAANSDPMGKKNLYSQSGM--SE 709
Query: 530 EVFHNSLTEELEPS 543
++ NSL +E S
Sbjct: 710 DLQSNSLVSGMEKS 723
>TAIR|locus:2043560 [details] [associations]
symbol:PAPS2 "poly(A) polymerase 2" species:3702
"Arabidopsis thaliana" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0004652 "polynucleotide adenylyltransferase activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM;IEA;IDA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0016779 "nucleotidyltransferase activity" evidence=IEA;ISS]
[GO:0031123 "RNA 3'-end processing" evidence=IEA] [GO:0043631 "RNA
polyadenylation" evidence=IEA;IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0006397 "mRNA processing" evidence=RCA]
InterPro:IPR002934 InterPro:IPR007010 InterPro:IPR007012
InterPro:IPR011068 InterPro:IPR014492 Pfam:PF01909 Pfam:PF04926
Pfam:PF04928 PIRSF:PIRSF018425 GO:GO:0005634 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0006351 GO:GO:0003723 EMBL:AC005395
GO:GO:0004652 GO:GO:0043631 KO:K14376 eggNOG:COG5186
Gene3D:3.30.70.590 SUPFAM:SSF55003 HOGENOM:HOG000204376 HSSP:P25500
EMBL:AF255297 EMBL:AY039974 EMBL:AY074533 IPI:IPI00518420
PIR:E84653 RefSeq:NP_565611.1 UniGene:At.14867 SMR:O82312
IntAct:O82312 STRING:O82312 EnsemblPlants:AT2G25850.2 GeneID:817127
KEGG:ath:AT2G25850 TAIR:At2g25850 InParanoid:O82312 OMA:MGSESIN
ProtClustDB:CLSN2688428 BRENDA:2.7.7.19 Genevestigator:O82312
Uniprot:O82312
Length = 800
Score = 1472 (523.2 bits), Expect = 2.0e-158, Sum P(2) = 2.0e-158
Identities = 275/382 (71%), Positives = 313/382 (81%)
Query: 2 SVLNNVDEQTVRSLNGCRVADQILKHVPNVEHFRMTLRCLKFWAKRRGVYSNVTGFLGGV 61
SVL +VDEQTVRSLNGCRVADQILK VPN EHFR TLRCLK+WAK+RGVYSNVTGFLGGV
Sbjct: 192 SVLCDVDEQTVRSLNGCRVADQILKLVPNSEHFRTTLRCLKYWAKKRGVYSNVTGFLGGV 251
Query: 62 NWALLVARVCQLYPNAIPSMLVSRFFRVYTQWRWPNPVMLCPIEEDELGFSVWDPRKNPR 121
NWALLVAR+CQ YPNAIPSMLVSRFFRVYTQWRWPNPVMLC IEED+L F VWDPRKN R
Sbjct: 252 NWALLVARLCQFYPNAIPSMLVSRFFRVYTQWRWPNPVMLCAIEEDDLSFPVWDPRKNHR 311
Query: 122 DRSHHMPIITPAYPCMNSSYNVSLSTLRVMTEQFQWGNRICEEIELNKAQWSALFEPYLF 181
DR H MPIITPAYPCMNSSYNVS STLRVMTEQFQ+GN IC+EIELNK WS+LF+ Y+F
Sbjct: 312 DRYHLMPIITPAYPCMNSSYNVSQSTLRVMTEQFQFGNTICQEIELNKQHWSSLFQQYMF 371
Query: 182 FEAYKNYLQVDIVXXXXXXLLTWKGWVESRFRQLTLKIERDTNGLLQCHPYPNEYIDPSK 241
FEAYKNYLQVD++ LL WKGWVESRFRQLTLKIERDTNG+L CHP PNEY+D SK
Sbjct: 372 FEAYKNYLQVDVLAADAEDLLAWKGWVESRFRQLTLKIERDTNGMLMCHPQPNEYVDTSK 431
Query: 242 PCPNSAFFMGLRRKEGVTGKERQQFDIRGTVDNFREEIGMYMFWKPGMDIYVSHVRRRQL 301
+ AFFMGL+R +G G+E QQFDIRGTVD FR+E+ MYMFW+PGMD++VSHVRRRQL
Sbjct: 432 QFRHCAFFMGLQRADGFGGQECQQFDIRGTVDEFRQEVNMYMFWRPGMDVHVSHVRRRQL 491
Query: 302 PSFVFPDGYKRPRPSRHFNEQAGKPCEDVKMCQSGSSGRHLKREKEHEMEEVRPDKSVKR 361
PSFVFP+GYKR R SRH ++Q +P ++ S S R+ KR+ + E+ RP+K KR
Sbjct: 492 PSFVFPNGYKRSRQSRHQSQQCREPGDEGVGSLSDSVERYAKRKNDDEIMNSRPEKREKR 551
Query: 362 ASISSEVPQPVSPGKTTGDSTN 383
AS S SP ++G +T+
Sbjct: 552 ASCSLHTLDAASPD-SSGITTS 572
Score = 93 (37.8 bits), Expect = 2.0e-158, Sum P(2) = 2.0e-158
Identities = 57/232 (24%), Positives = 105/232 (45%)
Query: 338 SGRHLKREKE-----HEMEEVRPDKSVKRASISSE---VPQPVSPGKTTGDSTNDSEVMS 389
+ R KREK H ++ PD S S + + VP P + TGD V S
Sbjct: 542 NSRPEKREKRASCSLHTLDAASPDSSGITTSGTPQIGIVPGPRAECLVTGDLV--CNVTS 599
Query: 390 AGGHLVSEKDTMAAHMQLDGIVNHESVALNEQKCTLVDDLSVINNESESSD-LAEPSKPG 448
V + ++ +L +E + +EQ VD +++ + + ++ +A+ +P
Sbjct: 600 LPNVEVEAEKFISKITELRKFSQYEHTSGSEQILE-VDSRALVQSYHDLAEPVAKHVRPD 658
Query: 449 L--LGRCE------I-HSV--DTVSSGSLLNVKGVAIKVDQELVKPCNQMTVVEVAGREY 497
L L CE I H + ++++ ++ + V++++ + + + E+AG
Sbjct: 659 LSALLACEGGQNKEIGHDMGSESINDTDTQHLPR-RLNVNEDVDEVEREAKLGEIAGGVL 717
Query: 498 ESKSCTQNLSCEGDDCVASLDTLSENGCLNSCEVFHNSLTEELEPSSTLGAT 549
+ C +NL EG A+LD+ EN L+S +F + L EEL+ +S L T
Sbjct: 718 WNGHCGRNLDHEGFVTPANLDSAVENRNLHSDGLFKSGLPEELQSNSLLSGT 769
>TAIR|locus:2030943 [details] [associations]
symbol:PAPS1 "poly(A) polymerase 1" species:3702
"Arabidopsis thaliana" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0004652 "polynucleotide adenylyltransferase activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM;IEA;IDA]
[GO:0016779 "nucleotidyltransferase activity" evidence=IEA;ISS]
[GO:0005515 "protein binding" evidence=IPI] [GO:0043631 "RNA
polyadenylation" evidence=IDA] [GO:0000278 "mitotic cell cycle"
evidence=RCA] [GO:0006396 "RNA processing" evidence=RCA]
InterPro:IPR002934 InterPro:IPR007010 InterPro:IPR007012
InterPro:IPR011068 InterPro:IPR014492 Pfam:PF01909 Pfam:PF04926
Pfam:PF04928 PIRSF:PIRSF018425 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0006351 EMBL:AC034106
GO:GO:0003723 GO:GO:0004652 GO:GO:0043631 KO:K14376
UniGene:At.26787 UniGene:At.73166 eggNOG:COG5186 Gene3D:3.30.70.590
SUPFAM:SSF55003 HOGENOM:HOG000204376 HSSP:P25500 BRENDA:2.7.7.19
EMBL:BT005990 EMBL:AY323906 EMBL:AK227446 IPI:IPI00540119
PIR:B86315 RefSeq:NP_173240.2 ProteinModelPortal:Q9LMT2 SMR:Q9LMT2
IntAct:Q9LMT2 STRING:Q9LMT2 PaxDb:Q9LMT2 PRIDE:Q9LMT2
EnsemblPlants:AT1G17980.1 GeneID:838378 KEGG:ath:AT1G17980
TAIR:At1g17980 InParanoid:Q9LMT2 OMA:WDTLFEP PhylomeDB:Q9LMT2
ProtClustDB:CLSN2680711 Genevestigator:Q9LMT2 Uniprot:Q9LMT2
Length = 713
Score = 1132 (403.5 bits), Expect = 8.2e-115, P = 8.2e-115
Identities = 202/316 (63%), Positives = 245/316 (77%)
Query: 2 SVLNNVDEQTVRSLNGCRVADQILKHVPNVEHFRMTLRCLKFWAKRRGVYSNVTGFLGGV 61
S+L N DEQTVRSLNGCRV DQIL+ VPN+++FR TLRC++FWAKRRGVYSNV+GFLGG+
Sbjct: 180 SILQNADEQTVRSLNGCRVTDQILRLVPNIQNFRTTLRCMRFWAKRRGVYSNVSGFLGGI 239
Query: 62 NWALLVARVCQLYPNAIPSMLVSRFFRVYTQWRWPNPVMLCPIEEDELGFSVWDPRKNPR 121
NWALLVAR+CQLYPNA+P++LVSRFFRV+ QW WPN + LC +E LG VWDPR NP+
Sbjct: 240 NWALLVARICQLYPNALPNILVSRFFRVFYQWNWPNAIFLCSPDEGSLGLQVWDPRINPK 299
Query: 122 DRSHHMPIITPAYPCMNSSYNVSLSTLRVMTEQFQWGNRICEEIELNKAQWSALFEPYLF 181
DR H MPIITPAYPCMNSSYNVS STLR+M +FQ GN ICE +E NKA W LFEP+ F
Sbjct: 300 DRLHIMPIITPAYPCMNSSYNVSESTLRIMKGEFQRGNEICEAMESNKADWDTLFEPFAF 359
Query: 182 FEAYKNYLQVDIVXXXXXXLLTWKGWVESRFRQLTLKIERDTNGLLQCHPYPNEYIDPSK 241
FEAYKNYLQ+DI L WKGWVESR RQLTLKIER +L CHP+P+++ D S+
Sbjct: 360 FEAYKNYLQIDISAANVDDLRKWKGWVESRLRQLTLKIERHFK-MLHCHPHPHDFQDTSR 418
Query: 242 PCPNSAFFMGLRRKEGVTGKERQQFDIRGTVDNFREEIGMYMFWKPGMDIYVSHVRRRQL 301
P + ++FMGL+RK+GV E +QFDIR TV+ F+ + Y W PGM+I V H++RR L
Sbjct: 419 PL-HCSYFMGLQRKQGVPAAEGEQFDIRRTVEEFKHTVNAYTLWIPGMEISVGHIKRRSL 477
Query: 302 PSFVFPDGYKRPRPSR 317
P+FVFP G + S+
Sbjct: 478 PNFVFPGGVRPSHTSK 493
>DICTYBASE|DDB_G0288259 [details] [associations]
symbol:papA "poly(A) polymerase" species:44689
"Dictyostelium discoideum" [GO:0043631 "RNA polyadenylation"
evidence=IEA] [GO:0031123 "RNA 3'-end processing" evidence=IEA]
[GO:0016779 "nucleotidyltransferase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA;IBA] [GO:0004652 "polynucleotide
adenylyltransferase activity" evidence=IEA;ISS;IBA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006378 "mRNA polyadenylation"
evidence=ISS;IBA] [GO:0005847 "mRNA cleavage and polyadenylation
specificity factor complex" evidence=ISS] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0016740 "transferase activity"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR002934 InterPro:IPR007010
InterPro:IPR007012 InterPro:IPR011068 InterPro:IPR014492
Pfam:PF01909 Pfam:PF04926 Pfam:PF04928 PIRSF:PIRSF018425
dictyBase:DDB_G0288259 GO:GO:0005524 GO:GO:0046872 GO:GO:0006378
GO:GO:0006351 GenomeReviews:CM000154_GR GO:GO:0003723
EMBL:AAFI02000109 GO:GO:0005847 GO:GO:0004652 KO:K14376
eggNOG:COG5186 Gene3D:3.30.70.590 SUPFAM:SSF55003 HSSP:P25500
RefSeq:XP_636814.1 ProteinModelPortal:Q54J73 STRING:Q54J73
EnsemblProtists:DDB0216279 GeneID:8626531 KEGG:ddi:DDB_G0288259
OMA:NINESST ProtClustDB:PTZ00418 Uniprot:Q54J73
Length = 809
Score = 732 (262.7 bits), Expect = 8.5e-75, Sum P(2) = 8.5e-75
Identities = 155/392 (39%), Positives = 221/392 (56%)
Query: 2 SVLNNVDEQTVRSLNGCRVADQILKHVPNVEHFRMTLRCLKFWAKRRGVYSNVTGFLGGV 61
S L N+DE+++ SLNGCRV DQILK VPN+ +FRM LRC+K WA RRG+YSN+ GFLGGV
Sbjct: 222 SFLKNIDEKSILSLNGCRVTDQILKLVPNIPNFRMALRCIKLWAIRRGIYSNILGFLGGV 281
Query: 62 NWALLVARVCQLYPNAIPSMLVSRFFRVYTQWRWPNPVMLCPIEEDE-LGFSVWDPRKNP 120
+WALL AR+CQLYPN+ PS ++ RFF+VY W+WP P++LC I+E LG VW+P+
Sbjct: 282 SWALLTARICQLYPNSAPSTIIHRFFKVYEIWKWPAPILLCHIQEGGILGPKVWNPK--- 338
Query: 121 RDRSHHMPIITPAYPCMNSSYNVSLSTLRVMTEQFQWGNRICEEIELNKAQWSALFEPYL 180
RD++H MPIITPAYP MNS+YNVS STL++M +F G I +IE + W L E
Sbjct: 339 RDKAHLMPIITPAYPSMNSTYNVSKSTLQLMKSEFVRGAEITRKIETGECTWKNLLEKCD 398
Query: 181 FFEAYKNYLQVDIVXXXXXXLLTWKGWVESRFRQLTLKIERDTNGLLQCHPYPNEYID-- 238
FF Y Y+++D W+GW+ES+ R L +E T + PYP + +
Sbjct: 399 FFTRYSFYIEIDCYSMNEEDSRKWEGWIESKLRFLISNLE-STPKMKFAVPYPKGFTNNL 457
Query: 239 -----PSKPCPNSAFFMGLRRKEGVTGKERQQFDIRGTVDNFREEIGMYMFWKPG---MD 290
P + C ++FFMGL T + D+ V F I ++ +P MD
Sbjct: 458 HKANNPDQIC--TSFFMGLSFNFSNTPGADKSVDLTKAVTEFTGIIKDWLRTQPNPDTMD 515
Query: 291 IYVSHVRRRQLPSFVFPDGYKRPRPSRHFNEQAGKPCEDVKMCQSGSSGRHLKREKEHEM 350
I V +++++QLP+FV +G + P + G+P K +S +S L K
Sbjct: 516 IKVQYIKKKQLPAFVKDEGPEEPVKTTKKRSSTGEPSATRKKLKSENSDNKLNSPKSPIT 575
Query: 351 EEVRPDKSVKRASISSEVPQPVSPGKTTGDST 382
+ + + ++ + TT +T
Sbjct: 576 TNINSTPTTSTPTTTANTTTNTTTATTTTTTT 607
Score = 41 (19.5 bits), Expect = 8.5e-75, Sum P(2) = 8.5e-75
Identities = 9/21 (42%), Positives = 14/21 (66%)
Query: 426 VDDLSVINNESESSDLAEPSK 446
V++LS I++ SE+S P K
Sbjct: 779 VNELSFISSSSETSQSKPPPK 799
>UNIPROTKB|P25500 [details] [associations]
symbol:PAPOLA "Poly(A) polymerase alpha" species:9913 "Bos
taurus" [GO:0005524 "ATP binding" evidence=IDA] [GO:0000287
"magnesium ion binding" evidence=IDA] [GO:0030145 "manganese ion
binding" evidence=IDA] [GO:0043631 "RNA polyadenylation"
evidence=IDA] [GO:0004652 "polynucleotide adenylyltransferase
activity" evidence=IDA] [GO:0006378 "mRNA polyadenylation"
evidence=IBA] [GO:0006369 "termination of RNA polymerase II
transcription" evidence=IBA] [GO:0005737 "cytoplasm" evidence=IBA]
[GO:0005634 "nucleus" evidence=IBA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IBA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR002934 InterPro:IPR007010 InterPro:IPR007012
InterPro:IPR011068 InterPro:IPR014492 Pfam:PF01909 Pfam:PF04926
Pfam:PF04928 PIRSF:PIRSF018425 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0000287 GO:GO:0006378 GO:GO:0003723
GO:GO:0030145 GO:GO:0000398 GO:GO:0006369 GO:GO:0004652 KO:K14376
eggNOG:COG5186 Gene3D:3.30.70.590 SUPFAM:SSF55003 EMBL:X61585
EMBL:X63436 IPI:IPI00686724 IPI:IPI00699231 PIR:S17875 PIR:S17925
PIR:S18642 RefSeq:NP_788820.1 UniGene:Bt.109586 PDB:1F5A PDB:1Q78
PDB:1Q79 PDBsum:1F5A PDBsum:1Q78 PDBsum:1Q79
ProteinModelPortal:P25500 SMR:P25500 STRING:P25500
Ensembl:ENSBTAT00000005300 GeneID:338051 KEGG:bta:338051 CTD:10914
GeneTree:ENSGT00390000017928 HOGENOM:HOG000204376
HOVERGEN:HBG053502 InParanoid:P25500 OMA:SPVTTQG
EvolutionaryTrace:P25500 NextBio:20812502 ArrayExpress:P25500
Uniprot:P25500
Length = 739
Score = 713 (256.0 bits), Expect = 1.6e-73, Sum P(2) = 1.6e-73
Identities = 164/395 (41%), Positives = 224/395 (56%)
Query: 2 SVLNNVDEQTVRSLNGCRVADQILKHVPNVEHFRMTLRCLKFWAKRRGVYSNVTGFLGGV 61
S+L N+D + +RSLNGCRV D+IL VPN+++FR+TLR +K WAKR +YSN+ GFLGGV
Sbjct: 188 SLLKNLDIRCIRSLNGCRVTDEILHLVPNIDNFRLTLRAIKLWAKRHNIYSNILGFLGGV 247
Query: 62 NWALLVARVCQLYPNAIPSMLVSRFFRVYTQWRWPNPVMLCPIEEDELGFSVWDPRKNPR 121
+WA+LVAR CQLYPNAI S LV +FF V+++W WPNPV+L EE L VWDPR NP
Sbjct: 248 SWAMLVARTCQLYPNAIASTLVHKFFLVFSKWEWPNPVLLKQPEECNLNLPVWDPRVNPS 307
Query: 122 DRSHHMPIITPAYPCMNSSYNVSLSTLRVMTEQFQWGNRICEEIELNKAQWSALFEPYLF 181
DR H MPIITPAYP NS+YNVS+ST VM E+F+ G I +EI L+KA+WS LFE F
Sbjct: 308 DRYHLMPIITPAYPQQNSTYNVSVSTRMVMVEEFKQGLAITDEILLSKAEWSKLFEAPNF 367
Query: 182 FEAYKNYLQVDIVXXXXXXLLTWKGWVESRFRQLTLKIERDTNGLL-----QCHPYPNEY 236
F+ YK+Y+ + L W G VES+ R L +E++ L Q P P E
Sbjct: 368 FQKYKHYIVLLASAPTEKQRLEWVGLVESKIRILVGSLEKNEFITLAHVNPQSFPAPKE- 426
Query: 237 IDPSKPCPNSAFFMGLRRKEGVTGKERQ---QFDIRGTVDN-FREEIGMYMFWKPGMDIY 292
+P K + + +GL K+ + +DI+ D +R+ I MF + M I
Sbjct: 427 -NPDKEEFRTMWVIGLVFKKTENSENLSVDLTYDIQSFTDTVYRQAINSKMF-EVDMKIA 484
Query: 293 VSHVRRRQLPSFVFPDGYKRPRPSRHFNEQAGKPCEDVKMCQSGSSGRHLKREKEHEMEE 352
HV+R+QL + PS ++ E VK+ S L + ++ M
Sbjct: 485 AMHVKRKQLHQLL---------PSHVLQKKKKHSTEGVKLTPLNDSSLDLSMDSDNSMSV 535
Query: 353 VRPDKSVKRASI----SSEVPQPVSPGKTTGDSTN 383
P ++K + + SS+ +P T TN
Sbjct: 536 PSPTSAMKTSPLNSSGSSQGRNSPAPAVTAASVTN 570
Score = 48 (22.0 bits), Expect = 1.6e-73, Sum P(2) = 1.6e-73
Identities = 27/83 (32%), Positives = 36/83 (43%)
Query: 355 PDKSVKRASISSEVPQPVSPGKTTGDSTN-DSEVMSAGGHLVSEK----DTMAAHMQLDG 409
P VKR S + P KT D T+ D+ ++ GH +E DT + Q +
Sbjct: 639 PIVGVKRTSSPHKEESPKKT-KTEEDETSEDANCLALSGHDKTETKEQLDTETSTTQSET 697
Query: 410 IVNHESVALNEQKCTLVDDLSVI 432
I S+ L QK T DLS I
Sbjct: 698 IQTATSL-LASQK-TSSTDLSDI 718
>UNIPROTKB|P51003 [details] [associations]
symbol:PAPOLA "Poly(A) polymerase alpha" species:9606 "Homo
sapiens" [GO:0004652 "polynucleotide adenylyltransferase activity"
evidence=ISS;IBA] [GO:0005634 "nucleus" evidence=IDA;TAS]
[GO:0005737 "cytoplasm" evidence=TAS] [GO:0006378 "mRNA
polyadenylation" evidence=NAS] [GO:0003723 "RNA binding"
evidence=NAS] [GO:0043631 "RNA polyadenylation" evidence=ISS]
[GO:0000287 "magnesium ion binding" evidence=ISS] [GO:0005524 "ATP
binding" evidence=ISS] [GO:0030145 "manganese ion binding"
evidence=ISS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=TAS]
[GO:0006369 "termination of RNA polymerase II transcription"
evidence=TAS] [GO:0006397 "mRNA processing" evidence=TAS]
[GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467 "gene
expression" evidence=TAS] [GO:0031124 "mRNA 3'-end processing"
evidence=TAS] [GO:0005730 "nucleolus" evidence=IDA]
Reactome:REACT_71 InterPro:IPR002934 InterPro:IPR007010
InterPro:IPR007012 InterPro:IPR011068 InterPro:IPR014492
Pfam:PF01909 Pfam:PF04926 Pfam:PF04928 PIRSF:PIRSF018425
GO:GO:0005524 GO:GO:0005737 GO:GO:0005654 GO:GO:0000287
Reactome:REACT_1675 GO:GO:0006378 GO:GO:0003723 GO:GO:0030145
GO:GO:0000398 Reactome:REACT_1788 GO:GO:0006369 GO:GO:0004652
Reactome:REACT_78 KO:K14376 eggNOG:COG5186 Gene3D:3.30.70.590
SUPFAM:SSF55003 CTD:10914 HOVERGEN:HBG053502 OMA:SPVTTQG
EMBL:BC000927 EMBL:BC036014 EMBL:BX248301 EMBL:BX248753
EMBL:BX161482 EMBL:X76770 IPI:IPI00384028 IPI:IPI01025082
RefSeq:NP_001238935.1 RefSeq:NP_001238936.1 RefSeq:NP_116021.2
UniGene:Hs.253726 ProteinModelPortal:P51003 SMR:P51003
DIP:DIP-27610N IntAct:P51003 MINT:MINT-125699 STRING:P51003
PhosphoSite:P51003 DMDM:59803092 PaxDb:P51003 PeptideAtlas:P51003
PRIDE:P51003 Ensembl:ENST00000216277 Ensembl:ENST00000557320
Ensembl:ENST00000557471 GeneID:10914 KEGG:hsa:10914 UCSC:uc001yfo.3
UCSC:uc001yfq.3 GeneCards:GC14P096969 HGNC:HGNC:14981 HPA:HPA001788
MIM:605553 neXtProt:NX_P51003 PharmGKB:PA32932 InParanoid:P51003
OrthoDB:EOG4J6RQB PhylomeDB:P51003 ChiTaRS:PAPOLA GenomeRNAi:10914
NextBio:41453 ArrayExpress:P51003 Bgee:P51003 CleanEx:HS_PAPOLA
Genevestigator:P51003 GermOnline:ENSG00000090060 Uniprot:P51003
Length = 745
Score = 709 (254.6 bits), Expect = 3.2e-73, Sum P(2) = 3.2e-73
Identities = 163/395 (41%), Positives = 223/395 (56%)
Query: 2 SVLNNVDEQTVRSLNGCRVADQILKHVPNVEHFRMTLRCLKFWAKRRGVYSNVTGFLGGV 61
S+L N+D + +RSLNGCRV D+IL VPN+++FR+TLR +K WAKR +YSN+ GFLGGV
Sbjct: 188 SLLKNLDIRCIRSLNGCRVTDEILHLVPNIDNFRLTLRAIKLWAKRHNIYSNILGFLGGV 247
Query: 62 NWALLVARVCQLYPNAIPSMLVSRFFRVYTQWRWPNPVMLCPIEEDELGFSVWDPRKNPR 121
+WA+LVAR CQLYPNAI S LV +FF V+++W WPNPV+L EE L VWDPR NP
Sbjct: 248 SWAMLVARTCQLYPNAIASTLVHKFFLVFSKWEWPNPVLLKQPEECNLNLPVWDPRVNPS 307
Query: 122 DRSHHMPIITPAYPCMNSSYNVSLSTLRVMTEQFQWGNRICEEIELNKAQWSALFEPYLF 181
DR H MPIITPAYP NS+YNVS+ST VM E+F+ G I +EI L+KA+WS LFE F
Sbjct: 308 DRYHLMPIITPAYPQQNSTYNVSVSTRMVMVEEFKQGLAITDEILLSKAEWSKLFEAPNF 367
Query: 182 FEAYKNYLQVDIVXXXXXXLLTWKGWVESRFRQLTLKIERDTNGLL-----QCHPYPNEY 236
F+ YK+Y+ + L W G VES+ R L +E++ L Q P P E
Sbjct: 368 FQKYKHYIVLLASAPTEKQRLEWVGLVESKIRILVGSLEKNEFITLAHVNPQSFPAPKE- 426
Query: 237 IDPSKPCPNSAFFMGLRRKEGVTGKERQ---QFDIRGTVDN-FREEIGMYMFWKPGMDIY 292
+P K + + +GL K+ + +DI+ D +R+ I MF + M I
Sbjct: 427 -NPDKEEFRTMWVIGLVFKKTENSENLSVDLTYDIQSFTDTVYRQAINSKMF-EVDMKIA 484
Query: 293 VSHVRRRQLPSFVFPDGYKRPRPSRHFNEQAGKPCEDVKMCQSGSSGRHLKREKEHEMEE 352
HV+R+QL + P+ ++ E VK+ S L + ++ M
Sbjct: 485 AMHVKRKQLHQLL---------PNHVLQKKKKHSTEGVKLTALNDSSLDLSMDSDNSMSV 535
Query: 353 VRPDKSVKRASI----SSEVPQPVSPGKTTGDSTN 383
P + K + + SS+ +P T TN
Sbjct: 536 PSPTSATKTSPLNSSGSSQGRNSPAPAVTAASVTN 570
Score = 49 (22.3 bits), Expect = 3.2e-73, Sum P(2) = 3.2e-73
Identities = 27/95 (28%), Positives = 41/95 (43%)
Query: 355 PDKSVKRASISSEVPQPVSPGKTTGDSTN-DSEVMSAGGHLVSEKDTMAAHMQLDGIVNH 413
P VKR S + P KT D T+ D+ ++ GH D A QLD
Sbjct: 645 PIVGVKRTSSPHKEESPKKT-KTEEDETSEDANCLALSGH-----DKTEAKEQLD---TE 695
Query: 414 ESVALNEQKCTLVDDLSVINNESESSDLAE-PSKP 447
S +E T L+ + ++ S+DL++ P+ P
Sbjct: 696 TSTTQSETIQTAASLLA--SQKTSSTDLSDIPALP 728
>UNIPROTKB|F1PDS0 [details] [associations]
symbol:PAPOLA "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006378 "mRNA polyadenylation" evidence=IBA]
[GO:0006369 "termination of RNA polymerase II transcription"
evidence=IBA] [GO:0005737 "cytoplasm" evidence=IBA] [GO:0005634
"nucleus" evidence=IBA] [GO:0004652 "polynucleotide
adenylyltransferase activity" evidence=IBA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IBA] [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR002934 InterPro:IPR007010
InterPro:IPR007012 InterPro:IPR011068 InterPro:IPR014492
Pfam:PF01909 Pfam:PF04926 Pfam:PF04928 PIRSF:PIRSF018425
GO:GO:0005634 GO:GO:0005737 GO:GO:0006378 GO:GO:0003723
GO:GO:0000398 GO:GO:0006369 GO:GO:0004652 Gene3D:3.30.70.590
SUPFAM:SSF55003 GeneTree:ENSGT00390000017928 OMA:SPVTTQG
EMBL:AAEX03005970 EMBL:AAEX03005971 Ensembl:ENSCAFT00000028221
Uniprot:F1PDS0
Length = 745
Score = 707 (253.9 bits), Expect = 4.1e-73, Sum P(2) = 4.1e-73
Identities = 162/395 (41%), Positives = 224/395 (56%)
Query: 2 SVLNNVDEQTVRSLNGCRVADQILKHVPNVEHFRMTLRCLKFWAKRRGVYSNVTGFLGGV 61
S+L N+D + +RSLNGCRV D+IL VPN+++FR+TLR +K WAKR +YSN+ GFLGGV
Sbjct: 194 SLLKNLDIRCIRSLNGCRVTDEILHLVPNIDNFRLTLRAIKLWAKRHNIYSNILGFLGGV 253
Query: 62 NWALLVARVCQLYPNAIPSMLVSRFFRVYTQWRWPNPVMLCPIEEDELGFSVWDPRKNPR 121
+WA+LVAR CQLYPNAI S LV +FF V+++W WPNPV+L EE L VWDPR NP
Sbjct: 254 SWAMLVARTCQLYPNAIASTLVHKFFLVFSKWEWPNPVLLKQPEECNLNLPVWDPRVNPS 313
Query: 122 DRSHHMPIITPAYPCMNSSYNVSLSTLRVMTEQFQWGNRICEEIELNKAQWSALFEPYLF 181
DR H MPIITPAYP NS+YNVS+ST VM E+F+ G I +EI L+KA+WS LFE F
Sbjct: 314 DRYHLMPIITPAYPQQNSTYNVSVSTRMVMVEEFKQGLAITDEILLSKAEWSKLFEAPNF 373
Query: 182 FEAYKNYLQVDIVXXXXXXLLTWKGWVESRFRQLTLKIERDTNGLL-----QCHPYPNEY 236
F+ YK+Y+ + L W G VES+ R L +E++ L Q P P E
Sbjct: 374 FQKYKHYIVLLASAPTEKQRLEWVGLVESKIRILVGSLEKNEFITLAHVNPQSFPAPKE- 432
Query: 237 IDPSKPCPNSAFFMGLRRKEGVTGKERQ---QFDIRGTVDN-FREEIGMYMFWKPGMDIY 292
+P K + + +GL K+ + +DI+ D +R+ I MF + M I
Sbjct: 433 -NPDKEEFRTMWVIGLVFKKTENSENLSVDLTYDIQSFTDTVYRQAINSKMF-EVDMKIA 490
Query: 293 VSHVRRRQLPSFVFPDGYKRPRPSRHFNEQAGKPCEDVKMCQSGSSGRHLKREKEHEMEE 352
HV+R+QL + P+ ++ E V++ S L + ++ M
Sbjct: 491 AMHVKRKQLHQLL---------PNHVLQKKKKHSTEGVRLTPLNDSSLDLSMDSDNSMSV 541
Query: 353 VRPDKSVKRASI----SSEVPQPVSPGKTTGDSTN 383
P ++K + + SS+ +P T TN
Sbjct: 542 PSPTSAMKTSPLNSSGSSQGRNSPAPAVTAASVTN 576
Score = 50 (22.7 bits), Expect = 4.1e-73, Sum P(2) = 4.1e-73
Identities = 25/83 (30%), Positives = 36/83 (43%)
Query: 355 PDKSVKRASISSEVPQPVSPGKTTGDSTN-DSEVMSAGGHLVSEK----DTMAAHMQLDG 409
P VKR S + P KT D T+ D+ ++ GH +E DT + Q +
Sbjct: 645 PIVGVKRTSSPHKEESPKKT-KTEEDETSEDANCLALSGHDKTETKEQLDTETSTTQSET 703
Query: 410 IVNHESVALNEQKCTLVDDLSVI 432
I H + +L + T DLS I
Sbjct: 704 I--HTAASLLASQKTSSTDLSDI 724
>MGI|MGI:109301 [details] [associations]
symbol:Papola "poly (A) polymerase alpha" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IBA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004652 "polynucleotide
adenylyltransferase activity" evidence=IDA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IBA]
[GO:0005737 "cytoplasm" evidence=IBA] [GO:0006369 "termination of
RNA polymerase II transcription" evidence=IBA] [GO:0006378 "mRNA
polyadenylation" evidence=IBA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0016740 "transferase activity" evidence=IEA]
[GO:0016779 "nucleotidyltransferase activity" evidence=IEA]
[GO:0031123 "RNA 3'-end processing" evidence=IEA] [GO:0043631 "RNA
polyadenylation" evidence=IDA] [GO:0046872 "metal ion binding"
evidence=IEA] InterPro:IPR002934 InterPro:IPR007010
InterPro:IPR007012 InterPro:IPR011068 InterPro:IPR014492
Pfam:PF01909 Pfam:PF04926 Pfam:PF04928 PIRSF:PIRSF018425
MGI:MGI:109301 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
GO:GO:0000287 GO:GO:0006378 GO:GO:0003723 GO:GO:0030145
GO:GO:0000398 GO:GO:0006369 GO:GO:0004652 KO:K14376 eggNOG:COG5186
Gene3D:3.30.70.590 SUPFAM:SSF55003 CTD:10914
GeneTree:ENSGT00390000017928 HOGENOM:HOG000204376
HOVERGEN:HBG053502 OMA:SPVTTQG OrthoDB:EOG4J6RQB ChiTaRS:PAPOLA
EMBL:U52197 EMBL:U58134 EMBL:U58135 EMBL:AB086650 IPI:IPI00224655
IPI:IPI00224656 IPI:IPI00266738 IPI:IPI00467146 RefSeq:NP_035242.1
UniGene:Mm.255877 ProteinModelPortal:Q61183 SMR:Q61183
STRING:Q61183 PhosphoSite:Q61183 PaxDb:Q61183 PRIDE:Q61183
DNASU:18789 Ensembl:ENSMUST00000021535 Ensembl:ENSMUST00000109901
Ensembl:ENSMUST00000166735 GeneID:18789 KEGG:mmu:18789
UCSC:uc007oyv.1 UCSC:uc007oyx.1 InParanoid:Q61183 NextBio:295064
Bgee:Q61183 CleanEx:MM_PAPOLA Genevestigator:Q61183
GermOnline:ENSMUSG00000021111 Uniprot:Q61183
Length = 739
Score = 708 (254.3 bits), Expect = 1.4e-72, Sum P(2) = 1.4e-72
Identities = 158/374 (42%), Positives = 217/374 (58%)
Query: 2 SVLNNVDEQTVRSLNGCRVADQILKHVPNVEHFRMTLRCLKFWAKRRGVYSNVTGFLGGV 61
S+L N+D + +RSLNGCRV D+IL VPN+++FR+TLR +K WAKR +YSN+ GFLGGV
Sbjct: 188 SLLKNLDIRCIRSLNGCRVTDEILHLVPNIDNFRLTLRAIKLWAKRHNIYSNILGFLGGV 247
Query: 62 NWALLVARVCQLYPNAIPSMLVSRFFRVYTQWRWPNPVMLCPIEEDELGFSVWDPRKNPR 121
+WA+LVAR CQLYPNAI S LV +FF V+++W WPNPV+L EE L VWDPR NP
Sbjct: 248 SWAMLVARTCQLYPNAIASTLVHKFFLVFSKWEWPNPVLLKQPEECNLNLPVWDPRVNPS 307
Query: 122 DRSHHMPIITPAYPCMNSSYNVSLSTLRVMTEQFQWGNRICEEIELNKAQWSALFEPYLF 181
DR H MPIITPAYP NS+YNVS+ST VM E+F+ G I +EI L+KA+WS LFE F
Sbjct: 308 DRYHLMPIITPAYPQQNSTYNVSVSTRMVMVEEFKQGLAITDEILLSKAEWSKLFEAPNF 367
Query: 182 FEAYKNYLQVDIVXXXXXXLLTWKGWVESRFRQLTLKIERDTNGLLQCHPYPNEYIDPSK 241
F+ YK+Y+ + L W G VES+ R L +E++ + H P + P K
Sbjct: 368 FQKYKHYIVLLASAPTEKQRLEWVGLVESKIRILVGSLEKN-EFITLAHVNPQSFPAP-K 425
Query: 242 PCPNSAFF-----MGLRRKEGVTGKERQ---QFDIRGTVDN-FREEIGMYMFWKPGMDIY 292
P+ F +GL K+ + +DI+ D +R+ I MF + M I
Sbjct: 426 ESPDREEFRTMWVIGLVFKKTENSENLSVDLTYDIQSFTDTVYRQAINSKMF-ELDMKIA 484
Query: 293 VSHVRRRQLPSFVFPDGYKRPRPSRHFNEQAGKPCEDVKMCQSGSSGRHLKREKEHEMEE 352
HV+R+QL + PS ++ E VK+ S L + ++ M
Sbjct: 485 AMHVKRKQLHQLL---------PSHVLQKRKKHSTEGVKLTALNDSSLDLSMDSDNSMSV 535
Query: 353 VRPDKSVKRASISS 366
P ++K + ++S
Sbjct: 536 PSPTSAMKTSPLNS 549
Score = 44 (20.5 bits), Expect = 1.4e-72, Sum P(2) = 1.4e-72
Identities = 25/83 (30%), Positives = 37/83 (44%)
Query: 355 PDKSVKRASISSEVPQPVSPGKTTGDSTN-DSEVMSAGGHLVSEK----DTMAAHMQLDG 409
P VKR S ++ P KT D T+ D+ ++ GH +E D + +Q +
Sbjct: 639 PIVGVKRTSSPNKEESPKKT-KTEEDETSEDANCLALSGHDKTETKEQVDLETSAVQSET 697
Query: 410 IVNHESVALNEQKCTLVDDLSVI 432
+ S+ L QK T DLS I
Sbjct: 698 VPASASL-LASQK-TSSTDLSDI 718
>UNIPROTKB|G3MYA2 [details] [associations]
symbol:PAPOLA "Poly(A) polymerase alpha" species:9913 "Bos
taurus" [GO:0043631 "RNA polyadenylation" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0004652 "polynucleotide
adenylyltransferase activity" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR002934 InterPro:IPR007010
InterPro:IPR007012 InterPro:IPR011068 InterPro:IPR014492
Pfam:PF01909 Pfam:PF04926 Pfam:PF04928 PIRSF:PIRSF018425
GO:GO:0005634 GO:GO:0006351 GO:GO:0003723 GO:GO:0004652
GO:GO:0043631 Gene3D:3.30.70.590 SUPFAM:SSF55003
GeneTree:ENSGT00390000017928 EMBL:DAAA02053163
Ensembl:ENSBTAT00000063150 Uniprot:G3MYA2
Length = 718
Score = 713 (256.0 bits), Expect = 2.1e-70, P = 2.1e-70
Identities = 164/395 (41%), Positives = 224/395 (56%)
Query: 2 SVLNNVDEQTVRSLNGCRVADQILKHVPNVEHFRMTLRCLKFWAKRRGVYSNVTGFLGGV 61
S+L N+D + +RSLNGCRV D+IL VPN+++FR+TLR +K WAKR +YSN+ GFLGGV
Sbjct: 188 SLLKNLDIRCIRSLNGCRVTDEILHLVPNIDNFRLTLRAIKLWAKRHNIYSNILGFLGGV 247
Query: 62 NWALLVARVCQLYPNAIPSMLVSRFFRVYTQWRWPNPVMLCPIEEDELGFSVWDPRKNPR 121
+WA+LVAR CQLYPNAI S LV +FF V+++W WPNPV+L EE L VWDPR NP
Sbjct: 248 SWAMLVARTCQLYPNAIASTLVHKFFLVFSKWEWPNPVLLKQPEECNLNLPVWDPRVNPS 307
Query: 122 DRSHHMPIITPAYPCMNSSYNVSLSTLRVMTEQFQWGNRICEEIELNKAQWSALFEPYLF 181
DR H MPIITPAYP NS+YNVS+ST VM E+F+ G I +EI L+KA+WS LFE F
Sbjct: 308 DRYHLMPIITPAYPQQNSTYNVSVSTRMVMVEEFKQGLAITDEILLSKAEWSKLFEAPNF 367
Query: 182 FEAYKNYLQVDIVXXXXXXLLTWKGWVESRFRQLTLKIERDTNGLL-----QCHPYPNEY 236
F+ YK+Y+ + L W G VES+ R L +E++ L Q P P E
Sbjct: 368 FQKYKHYIVLLASAPTEKQRLEWVGLVESKIRILVGSLEKNEFITLAHVNPQSFPAPKE- 426
Query: 237 IDPSKPCPNSAFFMGLRRKEGVTGKERQ---QFDIRGTVDN-FREEIGMYMFWKPGMDIY 292
+P K + + +GL K+ + +DI+ D +R+ I MF + M I
Sbjct: 427 -NPDKEEFRTMWVIGLVFKKTENSENLSVDLTYDIQSFTDTVYRQAINSKMF-EVDMKIA 484
Query: 293 VSHVRRRQLPSFVFPDGYKRPRPSRHFNEQAGKPCEDVKMCQSGSSGRHLKREKEHEMEE 352
HV+R+QL + PS ++ E VK+ S L + ++ M
Sbjct: 485 AMHVKRKQLHQLL---------PSHVLQKKKKHSTEGVKLTPLNDSSLDLSMDSDNSMSV 535
Query: 353 VRPDKSVKRASI----SSEVPQPVSPGKTTGDSTN 383
P ++K + + SS+ +P T TN
Sbjct: 536 PSPTSAMKTSPLNSSGSSQGRNSPAPAVTAASVTN 570
>UNIPROTKB|Q3T0A2 [details] [associations]
symbol:PAPOLA "Poly(A) polymerase alpha" species:9913 "Bos
taurus" [GO:0043631 "RNA polyadenylation" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0004652 "polynucleotide
adenylyltransferase activity" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR002934 InterPro:IPR007010
InterPro:IPR007012 InterPro:IPR011068 InterPro:IPR014492
Pfam:PF01909 Pfam:PF04926 Pfam:PF04928 PIRSF:PIRSF018425
GO:GO:0005634 GO:GO:0006351 GO:GO:0003723 GO:GO:0004652
GO:GO:0043631 Gene3D:3.30.70.590 SUPFAM:SSF55003 UniGene:Bt.109586
GeneTree:ENSGT00390000017928 HOGENOM:HOG000204376
HOVERGEN:HBG053502 OrthoDB:EOG4J6RQB EMBL:DAAA02053163
EMBL:BC102481 IPI:IPI00705304 SMR:Q3T0A2 STRING:Q3T0A2
Ensembl:ENSBTAT00000021001 Uniprot:Q3T0A2
Length = 693
Score = 713 (256.0 bits), Expect = 2.1e-70, P = 2.1e-70
Identities = 164/395 (41%), Positives = 224/395 (56%)
Query: 2 SVLNNVDEQTVRSLNGCRVADQILKHVPNVEHFRMTLRCLKFWAKRRGVYSNVTGFLGGV 61
S+L N+D + +RSLNGCRV D+IL VPN+++FR+TLR +K WAKR +YSN+ GFLGGV
Sbjct: 188 SLLKNLDIRCIRSLNGCRVTDEILHLVPNIDNFRLTLRAIKLWAKRHNIYSNILGFLGGV 247
Query: 62 NWALLVARVCQLYPNAIPSMLVSRFFRVYTQWRWPNPVMLCPIEEDELGFSVWDPRKNPR 121
+WA+LVAR CQLYPNAI S LV +FF V+++W WPNPV+L EE L VWDPR NP
Sbjct: 248 SWAMLVARTCQLYPNAIASTLVHKFFLVFSKWEWPNPVLLKQPEECNLNLPVWDPRVNPS 307
Query: 122 DRSHHMPIITPAYPCMNSSYNVSLSTLRVMTEQFQWGNRICEEIELNKAQWSALFEPYLF 181
DR H MPIITPAYP NS+YNVS+ST VM E+F+ G I +EI L+KA+WS LFE F
Sbjct: 308 DRYHLMPIITPAYPQQNSTYNVSVSTRMVMVEEFKQGLAITDEILLSKAEWSKLFEAPNF 367
Query: 182 FEAYKNYLQVDIVXXXXXXLLTWKGWVESRFRQLTLKIERDTNGLL-----QCHPYPNEY 236
F+ YK+Y+ + L W G VES+ R L +E++ L Q P P E
Sbjct: 368 FQKYKHYIVLLASAPTEKQRLEWVGLVESKIRILVGSLEKNEFITLAHVNPQSFPAPKE- 426
Query: 237 IDPSKPCPNSAFFMGLRRKEGVTGKERQ---QFDIRGTVDN-FREEIGMYMFWKPGMDIY 292
+P K + + +GL K+ + +DI+ D +R+ I MF + M I
Sbjct: 427 -NPDKEEFRTMWVIGLVFKKTENSENLSVDLTYDIQSFTDTVYRQAINSKMF-EVDMKIA 484
Query: 293 VSHVRRRQLPSFVFPDGYKRPRPSRHFNEQAGKPCEDVKMCQSGSSGRHLKREKEHEMEE 352
HV+R+QL + PS ++ E VK+ S L + ++ M
Sbjct: 485 AMHVKRKQLHQLL---------PSHVLQKKKKHSTEGVKLTPLNDSSLDLSMDSDNSMSV 535
Query: 353 VRPDKSVKRASI----SSEVPQPVSPGKTTGDSTN 383
P ++K + + SS+ +P T TN
Sbjct: 536 PSPTSAMKTSPLNSSGSSQGRNSPAPAVTAASVTN 570
>UNIPROTKB|G3XAH6 [details] [associations]
symbol:PAPOLA "Poly(A) polymerase alpha" species:9606 "Homo
sapiens" [GO:0003723 "RNA binding" evidence=IEA] [GO:0004652
"polynucleotide adenylyltransferase activity" evidence=IEA]
[GO:0043631 "RNA polyadenylation" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR002934 InterPro:IPR007010 InterPro:IPR007012
InterPro:IPR011068 InterPro:IPR014492 Pfam:PF01909 Pfam:PF04926
Pfam:PF04928 PIRSF:PIRSF018425 GO:GO:0005634 GO:GO:0006351
GO:GO:0003723 GO:GO:0004652 GO:GO:0043631 EMBL:AL163051
Gene3D:3.30.70.590 SUPFAM:SSF55003 HGNC:HGNC:14981 ChiTaRS:PAPOLA
ProteinModelPortal:G3XAH6 SMR:G3XAH6 Ensembl:ENST00000392990
ArrayExpress:G3XAH6 Bgee:G3XAH6 Uniprot:G3XAH6
Length = 724
Score = 709 (254.6 bits), Expect = 5.5e-70, P = 5.5e-70
Identities = 163/395 (41%), Positives = 223/395 (56%)
Query: 2 SVLNNVDEQTVRSLNGCRVADQILKHVPNVEHFRMTLRCLKFWAKRRGVYSNVTGFLGGV 61
S+L N+D + +RSLNGCRV D+IL VPN+++FR+TLR +K WAKR +YSN+ GFLGGV
Sbjct: 188 SLLKNLDIRCIRSLNGCRVTDEILHLVPNIDNFRLTLRAIKLWAKRHNIYSNILGFLGGV 247
Query: 62 NWALLVARVCQLYPNAIPSMLVSRFFRVYTQWRWPNPVMLCPIEEDELGFSVWDPRKNPR 121
+WA+LVAR CQLYPNAI S LV +FF V+++W WPNPV+L EE L VWDPR NP
Sbjct: 248 SWAMLVARTCQLYPNAIASTLVHKFFLVFSKWEWPNPVLLKQPEECNLNLPVWDPRVNPS 307
Query: 122 DRSHHMPIITPAYPCMNSSYNVSLSTLRVMTEQFQWGNRICEEIELNKAQWSALFEPYLF 181
DR H MPIITPAYP NS+YNVS+ST VM E+F+ G I +EI L+KA+WS LFE F
Sbjct: 308 DRYHLMPIITPAYPQQNSTYNVSVSTRMVMVEEFKQGLAITDEILLSKAEWSKLFEAPNF 367
Query: 182 FEAYKNYLQVDIVXXXXXXLLTWKGWVESRFRQLTLKIERDTNGLL-----QCHPYPNEY 236
F+ YK+Y+ + L W G VES+ R L +E++ L Q P P E
Sbjct: 368 FQKYKHYIVLLASAPTEKQRLEWVGLVESKIRILVGSLEKNEFITLAHVNPQSFPAPKE- 426
Query: 237 IDPSKPCPNSAFFMGLRRKEGVTGKERQ---QFDIRGTVDN-FREEIGMYMFWKPGMDIY 292
+P K + + +GL K+ + +DI+ D +R+ I MF + M I
Sbjct: 427 -NPDKEEFRTMWVIGLVFKKTENSENLSVDLTYDIQSFTDTVYRQAINSKMF-EVDMKIA 484
Query: 293 VSHVRRRQLPSFVFPDGYKRPRPSRHFNEQAGKPCEDVKMCQSGSSGRHLKREKEHEMEE 352
HV+R+QL + P+ ++ E VK+ S L + ++ M
Sbjct: 485 AMHVKRKQLHQLL---------PNHVLQKKKKHSTEGVKLTALNDSSLDLSMDSDNSMSV 535
Query: 353 VRPDKSVKRASI----SSEVPQPVSPGKTTGDSTN 383
P + K + + SS+ +P T TN
Sbjct: 536 PSPTSATKTSPLNSSGSSQGRNSPAPAVTAASVTN 570
>UNIPROTKB|F1SQL7 [details] [associations]
symbol:PAPOLG "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0043631 "RNA polyadenylation" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0004652 "polynucleotide
adenylyltransferase activity" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR002934 InterPro:IPR007010
InterPro:IPR007012 InterPro:IPR011068 InterPro:IPR014492
Pfam:PF01909 Pfam:PF04926 Pfam:PF04928 PIRSF:PIRSF018425
GO:GO:0005634 GO:GO:0006351 GO:GO:0003723 GO:GO:0004652
GO:GO:0043631 KO:K14376 Gene3D:3.30.70.590 SUPFAM:SSF55003
GeneTree:ENSGT00390000017928 CTD:64895 OMA:IDGSSKR EMBL:CU467691
RefSeq:XP_003125156.1 UniGene:Ssc.62549 Ensembl:ENSSSCT00000009186
GeneID:100523547 KEGG:ssc:100523547 Uniprot:F1SQL7
Length = 741
Score = 678 (243.7 bits), Expect = 1.6e-69, Sum P(2) = 1.6e-69
Identities = 143/312 (45%), Positives = 191/312 (61%)
Query: 2 SVLNNVDEQTVRSLNGCRVADQILKHVPNVEHFRMTLRCLKFWAKRRGVYSNVTGFLGGV 61
S L ++D + +RSLNGCRV D+IL VPN E FR+TLR +K WAKRRG+YSN+ GFLGGV
Sbjct: 187 SRLRSLDIRCIRSLNGCRVTDEILHLVPNKETFRLTLRAVKLWAKRRGIYSNMLGFLGGV 246
Query: 62 NWALLVARVCQLYPNAIPSMLVSRFFRVYTQWRWPNPVMLCPIEEDELGFSVWDPRKNPR 121
+WA+LVAR CQLYPNA S LV +FF V+++W WPNPV+L EE L VWDPR NP
Sbjct: 247 SWAMLVARTCQLYPNAAASTLVHKFFLVFSKWEWPNPVLLKQPEESNLNLPVWDPRVNPS 306
Query: 122 DRSHHMPIITPAYPCMNSSYNVSLSTLRVMTEQFQWGNRICEEIELNKAQWSALFEPYLF 181
DR H MPIITPAYP NS+YNVS ST VM E+F+ G + +EI K+ WS L EP F
Sbjct: 307 DRYHLMPIITPAYPQQNSTYNVSTSTRTVMVEEFKQGLAVTDEILQGKSDWSKLLEPPNF 366
Query: 182 FEAYKNYLQVDIVXXXXXXLLTWKGWVESRFRQLTLKIERDTNGLLQCHPYPNEYIDPSK 241
F+ Y++Y+ + L W G VES+ R L +ER+ + H P + +
Sbjct: 367 FQKYRHYIVLTASASTEENHLEWVGLVESKIRVLVGNLERN-EFITLAHVNPQSFPGNKE 425
Query: 242 PCPN----SAFFMGL--RRKEGVTGKERQ-QFDIRGTVDN-FREEIGMYMFWKPGMDIYV 293
+ S +F+G+ RR E +DI+ D +R+ + M K GM I
Sbjct: 426 HHKDNNYVSMWFLGIIFRRVENAESVNIDLTYDIQSFTDTVYRQANNINML-KEGMKIEA 484
Query: 294 SHVRRRQLPSFV 305
+HV+++QL ++
Sbjct: 485 THVKKKQLHHYL 496
Score = 45 (20.9 bits), Expect = 1.6e-69, Sum P(2) = 1.6e-69
Identities = 21/95 (22%), Positives = 40/95 (42%)
Query: 443 EPSKPGL--LGRCEIHSVD----------TVSSGSLLNVKGVAIKVDQEL--VKPCNQMT 488
+PSKP + LG E ++ + +V L++ + KVD + V P T
Sbjct: 551 KPSKPDIPPLGETERNNTEPTAVIVEKPLSVPPAQGLSIPVIGAKVDSAVKAVSPPAVCT 610
Query: 489 VVEVAGREYESKSCTQNLSCEGDDCVASLDTLSEN 523
+ V GR + T + +G + + +++N
Sbjct: 611 IPTVVGRNVIPRITTPHSPAQGQPHLNGMSNMTKN 645
>UNIPROTKB|F1SAQ7 [details] [associations]
symbol:PAPOLA "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0043631 "RNA polyadenylation" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0004652 "polynucleotide
adenylyltransferase activity" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR002934 InterPro:IPR007010
InterPro:IPR007012 InterPro:IPR011068 InterPro:IPR014492
Pfam:PF01909 Pfam:PF04926 Pfam:PF04928 PIRSF:PIRSF018425
GO:GO:0005634 GO:GO:0006351 GO:GO:0003723 GO:GO:0004652
GO:GO:0043631 Gene3D:3.30.70.590 SUPFAM:SSF55003
GeneTree:ENSGT00390000017928 EMBL:CT827800
Ensembl:ENSSSCT00000002783 Uniprot:F1SAQ7
Length = 693
Score = 704 (252.9 bits), Expect = 1.8e-69, P = 1.8e-69
Identities = 161/395 (40%), Positives = 224/395 (56%)
Query: 2 SVLNNVDEQTVRSLNGCRVADQILKHVPNVEHFRMTLRCLKFWAKRRGVYSNVTGFLGGV 61
S+L N+D + +RSLNGCRV D+IL VPN+++FR+TLR +K WAKR +YSN+ GFLGGV
Sbjct: 188 SLLKNLDIRCIRSLNGCRVTDEILHLVPNIDNFRLTLRAIKLWAKRHNIYSNILGFLGGV 247
Query: 62 NWALLVARVCQLYPNAIPSMLVSRFFRVYTQWRWPNPVMLCPIEEDELGFSVWDPRKNPR 121
+WA+LVAR CQLYPNAI S LV +FF V+++W WPNPV+L EE L VWDPR NP
Sbjct: 248 SWAMLVARTCQLYPNAIASTLVHKFFLVFSKWEWPNPVLLKQPEECNLNLPVWDPRVNPS 307
Query: 122 DRSHHMPIITPAYPCMNSSYNVSLSTLRVMTEQFQWGNRICEEIELNKAQWSALFEPYLF 181
DR H MPIITPAYP NS+YNVS+ST VM E+F+ G I +EI L+KA+WS LFE F
Sbjct: 308 DRYHLMPIITPAYPQQNSTYNVSVSTRMVMVEEFKQGLAITDEILLSKAEWSKLFEAPNF 367
Query: 182 FEAYKNYLQVDIVXXXXXXLLTWKGWVESRFRQLTLKIERDTNGLL-----QCHPYPNEY 236
F+ YK+Y+ + L W G VES+ R L +E++ L Q P P E
Sbjct: 368 FQKYKHYIVLLASAPTEKQRLEWVGLVESKIRILVGSLEKNEFITLAHVNPQSFPAPKE- 426
Query: 237 IDPSKPCPNSAFFMGLRRKEGVTGKERQ---QFDIRGTVDN-FREEIGMYMFWKPGMDIY 292
+P K + + +GL K+ + +DI+ D +R+ I MF + M I
Sbjct: 427 -NPDKEEFRTMWVIGLVFKKTENSENLSVDLTYDIQSFTDTVYRQAINSKMF-EVDMKIA 484
Query: 293 VSHVRRRQLPSFVFPDGYKRPRPSRHFNEQAGKPCEDVKMCQSGSSGRHLKREKEHEMEE 352
HV+R+QL + P+ ++ + V++ S L + ++ M
Sbjct: 485 AMHVKRKQLHQLL---------PNHVLQKKKKHSTDGVRLTPLNDSSLDLSMDSDNSMSV 535
Query: 353 VRPDKSVKRASI----SSEVPQPVSPGKTTGDSTN 383
P ++K + + SS+ +P T TN
Sbjct: 536 PSPTSAMKTSPLNSSGSSQGRNSPAPAVTAASVTN 570
>UNIPROTKB|I3L6F0 [details] [associations]
symbol:PAPOLA "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0043631 "RNA polyadenylation" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0004652 "polynucleotide
adenylyltransferase activity" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR002934 InterPro:IPR007010
InterPro:IPR007012 InterPro:IPR011068 InterPro:IPR014492
Pfam:PF01909 Pfam:PF04926 Pfam:PF04928 PIRSF:PIRSF018425
GO:GO:0005634 GO:GO:0006351 GO:GO:0003723 GO:GO:0004652
GO:GO:0043631 Gene3D:3.30.70.590 SUPFAM:SSF55003
GeneTree:ENSGT00390000017928 OMA:SPVTTQG EMBL:CT827800
Ensembl:ENSSSCT00000027948 Uniprot:I3L6F0
Length = 734
Score = 704 (252.9 bits), Expect = 1.8e-69, P = 1.8e-69
Identities = 161/395 (40%), Positives = 224/395 (56%)
Query: 2 SVLNNVDEQTVRSLNGCRVADQILKHVPNVEHFRMTLRCLKFWAKRRGVYSNVTGFLGGV 61
S+L N+D + +RSLNGCRV D+IL VPN+++FR+TLR +K WAKR +YSN+ GFLGGV
Sbjct: 204 SLLKNLDIRCIRSLNGCRVTDEILHLVPNIDNFRLTLRAIKLWAKRHNIYSNILGFLGGV 263
Query: 62 NWALLVARVCQLYPNAIPSMLVSRFFRVYTQWRWPNPVMLCPIEEDELGFSVWDPRKNPR 121
+WA+LVAR CQLYPNAI S LV +FF V+++W WPNPV+L EE L VWDPR NP
Sbjct: 264 SWAMLVARTCQLYPNAIASTLVHKFFLVFSKWEWPNPVLLKQPEECNLNLPVWDPRVNPS 323
Query: 122 DRSHHMPIITPAYPCMNSSYNVSLSTLRVMTEQFQWGNRICEEIELNKAQWSALFEPYLF 181
DR H MPIITPAYP NS+YNVS+ST VM E+F+ G I +EI L+KA+WS LFE F
Sbjct: 324 DRYHLMPIITPAYPQQNSTYNVSVSTRMVMVEEFKQGLAITDEILLSKAEWSKLFEAPNF 383
Query: 182 FEAYKNYLQVDIVXXXXXXLLTWKGWVESRFRQLTLKIERDTNGLL-----QCHPYPNEY 236
F+ YK+Y+ + L W G VES+ R L +E++ L Q P P E
Sbjct: 384 FQKYKHYIVLLASAPTEKQRLEWVGLVESKIRILVGSLEKNEFITLAHVNPQSFPAPKE- 442
Query: 237 IDPSKPCPNSAFFMGLRRKEGVTGKERQ---QFDIRGTVDN-FREEIGMYMFWKPGMDIY 292
+P K + + +GL K+ + +DI+ D +R+ I MF + M I
Sbjct: 443 -NPDKEEFRTMWVIGLVFKKTENSENLSVDLTYDIQSFTDTVYRQAINSKMF-EVDMKIA 500
Query: 293 VSHVRRRQLPSFVFPDGYKRPRPSRHFNEQAGKPCEDVKMCQSGSSGRHLKREKEHEMEE 352
HV+R+QL + P+ ++ + V++ S L + ++ M
Sbjct: 501 AMHVKRKQLHQLL---------PNHVLQKKKKHSTDGVRLTPLNDSSLDLSMDSDNSMSV 551
Query: 353 VRPDKSVKRASI----SSEVPQPVSPGKTTGDSTN 383
P ++K + + SS+ +P T TN
Sbjct: 552 PSPTSAMKTSPLNSSGSSQGRNSPAPAVTAASVTN 586
>UNIPROTKB|F1NDP1 [details] [associations]
symbol:PAPOLA "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0004652
"polynucleotide adenylyltransferase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0043631 "RNA
polyadenylation" evidence=IEA] InterPro:IPR007010
InterPro:IPR007012 InterPro:IPR011068 InterPro:IPR014492
Pfam:PF04926 Pfam:PF04928 PIRSF:PIRSF018425 GO:GO:0005634
GO:GO:0006351 GO:GO:0003723 GO:GO:0004652 GO:GO:0043631
Gene3D:3.30.70.590 SUPFAM:SSF55003 GeneTree:ENSGT00390000017928
EMBL:AADN02003685 IPI:IPI00587050 Ensembl:ENSGALT00000018089
ArrayExpress:F1NDP1 Uniprot:F1NDP1
Length = 620
Score = 702 (252.2 bits), Expect = 3.0e-69, P = 3.0e-69
Identities = 161/395 (40%), Positives = 223/395 (56%)
Query: 2 SVLNNVDEQTVRSLNGCRVADQILKHVPNVEHFRMTLRCLKFWAKRRGVYSNVTGFLGGV 61
S+L N+D + +RSLNGCRV D+IL VPN+++FR+TLR +K WAKR +YSN+ GFLGGV
Sbjct: 69 SLLKNLDIRCIRSLNGCRVTDEILHLVPNIDNFRLTLRAIKLWAKRHNIYSNILGFLGGV 128
Query: 62 NWALLVARVCQLYPNAIPSMLVSRFFRVYTQWRWPNPVMLCPIEEDELGFSVWDPRKNPR 121
+WA+LVAR CQLYPNAI S LV +FF V+++W WPNPV+L EE L VWDPR NP
Sbjct: 129 SWAMLVARTCQLYPNAIASTLVHKFFLVFSKWEWPNPVLLKQPEECNLNLPVWDPRVNPS 188
Query: 122 DRSHHMPIITPAYPCMNSSYNVSLSTLRVMTEQFQWGNRICEEIELNKAQWSALFEPYLF 181
DR H MPIITPAYP NS+YNVS+ST VM E+F+ G I +EI L+KA+WS LFE F
Sbjct: 189 DRYHLMPIITPAYPQQNSTYNVSVSTRMVMVEEFKQGLAITDEILLSKAEWSKLFEAPNF 248
Query: 182 FEAYKNYLQVDIVXXXXXXLLTWKGWVESRFRQLTLKIERDTNGLL-----QCHPYPNEY 236
F+ YK+Y+ + L W G VES+ R L +E++ L Q P P E
Sbjct: 249 FQKYKHYIVLLASAPTEKQRLEWVGLVESKIRILVGNLEKNEFITLAHVNPQSFPAPKE- 307
Query: 237 IDPSKPCPNSAFFMGLRRKEGVTGKERQ---QFDIRGTVDN-FREEIGMYMFWKPGMDIY 292
+P K + + +GL K+ + +DI+ D +R+ I MF + M I
Sbjct: 308 -NPDKEEYRTMWVIGLVFKKTENSENLSVDLTYDIQSFTDTVYRQAINSKMF-EMDMKIA 365
Query: 293 VSHVRRRQLPSFVFPDGYKRPRPSRHFNEQAGKPCEDVKMCQSGSSGRHLKREKEHEMEE 352
HV+R+QL + P+ ++ E V++ S L + ++
Sbjct: 366 ARHVKRKQLHQLL---------PNHVLQKKKKHSTEGVRLTALNDSSLDLSMDSDNSTSV 416
Query: 353 VRPDKSVKRASI----SSEVPQPVSPGKTTGDSTN 383
P ++K + + SS+ +P T TN
Sbjct: 417 PSPTSAMKTSPLNSSGSSQGRSSPAPAVTAASVTN 451
>UNIPROTKB|F1NKG9 [details] [associations]
symbol:PAPOLA "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0004652
"polynucleotide adenylyltransferase activity" evidence=IBA]
[GO:0005634 "nucleus" evidence=IBA] [GO:0005737 "cytoplasm"
evidence=IBA] [GO:0006378 "mRNA polyadenylation" evidence=IBA]
InterPro:IPR002934 InterPro:IPR007010 InterPro:IPR007012
InterPro:IPR011068 InterPro:IPR014492 Pfam:PF01909 Pfam:PF04926
Pfam:PF04928 PIRSF:PIRSF018425 GO:GO:0005634 GO:GO:0005737
GO:GO:0006378 GO:GO:0006351 GO:GO:0003723 GO:GO:0004652 KO:K14376
Gene3D:3.30.70.590 SUPFAM:SSF55003 CTD:10914
GeneTree:ENSGT00390000017928 OMA:SPVTTQG EMBL:AADN02003685
IPI:IPI00820771 RefSeq:NP_001185530.1 UniGene:Gga.4316
Ensembl:ENSGALT00000037556 GeneID:395878 KEGG:gga:395878
NextBio:20815945 ArrayExpress:F1NKG9 Uniprot:F1NKG9
Length = 737
Score = 702 (252.2 bits), Expect = 3.0e-69, P = 3.0e-69
Identities = 161/395 (40%), Positives = 223/395 (56%)
Query: 2 SVLNNVDEQTVRSLNGCRVADQILKHVPNVEHFRMTLRCLKFWAKRRGVYSNVTGFLGGV 61
S+L N+D + +RSLNGCRV D+IL VPN+++FR+TLR +K WAKR +YSN+ GFLGGV
Sbjct: 187 SLLKNLDIRCIRSLNGCRVTDEILHLVPNIDNFRLTLRAIKLWAKRHNIYSNILGFLGGV 246
Query: 62 NWALLVARVCQLYPNAIPSMLVSRFFRVYTQWRWPNPVMLCPIEEDELGFSVWDPRKNPR 121
+WA+LVAR CQLYPNAI S LV +FF V+++W WPNPV+L EE L VWDPR NP
Sbjct: 247 SWAMLVARTCQLYPNAIASTLVHKFFLVFSKWEWPNPVLLKQPEECNLNLPVWDPRVNPS 306
Query: 122 DRSHHMPIITPAYPCMNSSYNVSLSTLRVMTEQFQWGNRICEEIELNKAQWSALFEPYLF 181
DR H MPIITPAYP NS+YNVS+ST VM E+F+ G I +EI L+KA+WS LFE F
Sbjct: 307 DRYHLMPIITPAYPQQNSTYNVSVSTRMVMVEEFKQGLAITDEILLSKAEWSKLFEAPNF 366
Query: 182 FEAYKNYLQVDIVXXXXXXLLTWKGWVESRFRQLTLKIERDTNGLL-----QCHPYPNEY 236
F+ YK+Y+ + L W G VES+ R L +E++ L Q P P E
Sbjct: 367 FQKYKHYIVLLASAPTEKQRLEWVGLVESKIRILVGNLEKNEFITLAHVNPQSFPAPKE- 425
Query: 237 IDPSKPCPNSAFFMGLRRKEGVTGKERQ---QFDIRGTVDN-FREEIGMYMFWKPGMDIY 292
+P K + + +GL K+ + +DI+ D +R+ I MF + M I
Sbjct: 426 -NPDKEEYRTMWVIGLVFKKTENSENLSVDLTYDIQSFTDTVYRQAINSKMF-EMDMKIA 483
Query: 293 VSHVRRRQLPSFVFPDGYKRPRPSRHFNEQAGKPCEDVKMCQSGSSGRHLKREKEHEMEE 352
HV+R+QL + P+ ++ E V++ S L + ++
Sbjct: 484 ARHVKRKQLHQLL---------PNHVLQKKKKHSTEGVRLTALNDSSLDLSMDSDNSTSV 534
Query: 353 VRPDKSVKRASI----SSEVPQPVSPGKTTGDSTN 383
P ++K + + SS+ +P T TN
Sbjct: 535 PSPTSAMKTSPLNSSGSSQGRSSPAPAVTAASVTN 569
>UNIPROTKB|Q9BWT3 [details] [associations]
symbol:PAPOLG "Poly(A) polymerase gamma" species:9606 "Homo
sapiens" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0004652 "polynucleotide adenylyltransferase
activity" evidence=IBA] [GO:0005634 "nucleus" evidence=IBA]
[GO:0006378 "mRNA polyadenylation" evidence=IBA] InterPro:IPR002934
InterPro:IPR007010 InterPro:IPR007012 InterPro:IPR011068
InterPro:IPR014492 Pfam:PF01909 Pfam:PF04926 Pfam:PF04928
PIRSF:PIRSF018425 GO:GO:0005524 GO:GO:0005634 EMBL:CH471053
GO:GO:0046872 GO:GO:0006378 GO:GO:0006351 GO:GO:0003723
GO:GO:0004652 KO:K14376 eggNOG:COG5186 Gene3D:3.30.70.590
SUPFAM:SSF55003 HOGENOM:HOG000204376 HOVERGEN:HBG053502
EMBL:AY029162 EMBL:AF312211 EMBL:AJ308101 EMBL:AK021867
EMBL:AK023544 EMBL:AK314663 EMBL:BC111701 EMBL:BC113747
IPI:IPI00304442 RefSeq:NP_075045.2 UniGene:Hs.387471
ProteinModelPortal:Q9BWT3 SMR:Q9BWT3 STRING:Q9BWT3
PhosphoSite:Q9BWT3 DMDM:116242699 PaxDb:Q9BWT3 PRIDE:Q9BWT3
Ensembl:ENST00000238714 GeneID:64895 KEGG:hsa:64895 UCSC:uc002sai.3
CTD:64895 GeneCards:GC02P060983 HGNC:HGNC:14982 HPA:CAB017795
neXtProt:NX_Q9BWT3 PharmGKB:PA32934 InParanoid:Q9BWT3 OMA:IDGSSKR
OrthoDB:EOG4R23T8 PhylomeDB:Q9BWT3 GenomeRNAi:64895 NextBio:67037
ArrayExpress:Q9BWT3 Bgee:Q9BWT3 CleanEx:HS_PAPOLG
Genevestigator:Q9BWT3 GermOnline:ENSG00000115421 Uniprot:Q9BWT3
Length = 736
Score = 681 (244.8 bits), Expect = 3.3e-69, Sum P(2) = 3.3e-69
Identities = 157/395 (39%), Positives = 217/395 (54%)
Query: 2 SVLNNVDEQTVRSLNGCRVADQILKHVPNVEHFRMTLRCLKFWAKRRGVYSNVTGFLGGV 61
S L ++D + +RSLNGCRV D+IL VPN E FR+TLR +K WAKRRG+YSN+ GFLGGV
Sbjct: 187 SRLRSLDIRCIRSLNGCRVTDEILHLVPNKETFRLTLRAVKLWAKRRGIYSNMLGFLGGV 246
Query: 62 NWALLVARVCQLYPNAIPSMLVSRFFRVYTQWRWPNPVMLCPIEEDELGFSVWDPRKNPR 121
+WA+LVAR CQLYPNA S LV +FF V+++W WPNPV+L EE L VWDPR NP
Sbjct: 247 SWAMLVARTCQLYPNAAASTLVHKFFLVFSKWEWPNPVLLKQPEESNLNLPVWDPRVNPS 306
Query: 122 DRSHHMPIITPAYPCMNSSYNVSLSTLRVMTEQFQWGNRICEEIELNKAQWSALFEPYLF 181
DR H MPIITPAYP NS+YNVS ST VM E+F+ G + +EI K+ WS L EP F
Sbjct: 307 DRYHLMPIITPAYPQQNSTYNVSTSTRTVMVEEFKQGLAVTDEILQGKSDWSKLLEPPNF 366
Query: 182 FEAYKNYLQVDIVXXXXXXLLTWKGWVESRFRQLTLKIERDTNGLLQCHPYPNEYIDPSK 241
F+ Y++Y+ + L W G VES+ R L +ER+ + H P + +
Sbjct: 367 FQKYRHYIVLTASASTEENHLEWVGLVESKIRVLVGNLERN-EFITLAHVNPQSFPGNKE 425
Query: 242 PCPN----SAFFMGL--RRKEGVTGKERQ-QFDIRGTVDN-FREEIGMYMFWKPGMDIYV 293
+ S +F+G+ RR E +DI+ D +R+ + M K GM I
Sbjct: 426 HHKDNNYVSMWFLGIIFRRVENAESVNIDLTYDIQSFTDTVYRQANNINML-KEGMKIEA 484
Query: 294 SHVRRRQLPSFVFPDGYKRPRPSRHFNEQAGKPCEDVKMCQSGSSGRHLKREKEHEMEEV 353
+HV+++QL ++ P+ ++ + DV G + L +
Sbjct: 485 THVKKKQLHHYL---------PAEILQKKKKQSLSDVNRSSGGLQSKRLSLDSSCLDSSR 535
Query: 354 RPDKSVKRASISSEVPQPVSPGKTTGDSTNDSEVM 388
D S +S+ P S G+T +S + V+
Sbjct: 536 DTDNGTPFNSPASKSDSP-SVGETERNSAEPAAVI 569
Score = 39 (18.8 bits), Expect = 3.3e-69, Sum P(2) = 3.3e-69
Identities = 12/58 (20%), Positives = 25/58 (43%)
Query: 467 LNVKGVAIKVDQEL--VKPCNQMTVVEVAGREYESKSCTQNLSCEGDDCVASLDTLSE 522
L++ + KVD + V P T+ V GR + T + +G + + +++
Sbjct: 582 LSIPVIGAKVDSTVKTVSPPTVCTIPTVVGRNVIPRITTPHNPAQGQPHLNGMSNITK 639
>ZFIN|ZDB-GENE-040426-1256 [details] [associations]
symbol:papolg "poly(A) polymerase gamma"
species:7955 "Danio rerio" [GO:0016779 "nucleotidyltransferase
activity" evidence=IEA] [GO:0043631 "RNA polyadenylation"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0004652
"polynucleotide adenylyltransferase activity" evidence=IEA;IBA]
[GO:0031123 "RNA 3'-end processing" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA;IBA] [GO:0006378 "mRNA polyadenylation"
evidence=IBA] InterPro:IPR002934 InterPro:IPR007010
InterPro:IPR007012 InterPro:IPR011068 InterPro:IPR014492
Pfam:PF01909 Pfam:PF04926 Pfam:PF04928 PIRSF:PIRSF018425
ZFIN:ZDB-GENE-040426-1256 GO:GO:0005634 GO:GO:0006378 GO:GO:0006351
GO:GO:0003723 GO:GO:0004652 KO:K14376 Gene3D:3.30.70.590
SUPFAM:SSF55003 HOVERGEN:HBG053502 CTD:64895 EMBL:BC056818
IPI:IPI00492667 RefSeq:NP_956915.1 UniGene:Dr.79169
ProteinModelPortal:Q6PGV5 SMR:Q6PGV5 STRING:Q6PGV5 PRIDE:Q6PGV5
GeneID:393593 KEGG:dre:393593 InParanoid:Q6PGV5 NextBio:20814613
ArrayExpress:Q6PGV5 Bgee:Q6PGV5 Uniprot:Q6PGV5
Length = 744
Score = 698 (250.8 bits), Expect = 8.0e-69, P = 8.0e-69
Identities = 157/392 (40%), Positives = 225/392 (57%)
Query: 2 SVLNNVDEQTVRSLNGCRVADQILKHVPNVEHFRMTLRCLKFWAKRRGVYSNVTGFLGGV 61
S+L N+D + +RSLNGCRV D+IL VPN E+FR+TLR +K WAKRRG+YSN+ GFLGGV
Sbjct: 189 SLLRNLDIRCIRSLNGCRVTDEILYLVPNKENFRLTLRAIKLWAKRRGIYSNMLGFLGGV 248
Query: 62 NWALLVARVCQLYPNAIPSMLVSRFFRVYTQWRWPNPVMLCPIEEDELGFSVWDPRKNPR 121
+WA+LVAR CQLYPNA+ + LV +FF V+++W WPNPV+L E+ L VWDPR NP
Sbjct: 249 SWAMLVARTCQLYPNAVAATLVHKFFLVFSKWEWPNPVLLKQPEDSNLNLPVWDPRVNPS 308
Query: 122 DRSHHMPIITPAYPCMNSSYNVSLSTLRVMTEQFQWGNRICEEIELNKAQWSALFEPYLF 181
DR H MPIITPAYP NS+YNVS ST +M E+F+ G + +EI KA WS LFEP F
Sbjct: 309 DRYHLMPIITPAYPQQNSTYNVSTSTRTIMNEEFKNGLTVTDEILQGKADWSKLFEPPNF 368
Query: 182 FEAYKNYLQVDIVXXXXXXLLTWKGWVESRFRQLTLKIERDTNGLLQCHPYPNEYIDPSK 241
F+ Y++Y+ + L W G VES+ R L +ER+ L H P + SK
Sbjct: 369 FQQYRHYIVLTASASTEENHLEWIGLVESKIRVLVGNLERNEYITL-AHVNPQSF-PGSK 426
Query: 242 PCPN-----SAFFMGLRRKEGVTGKERQQ----FDIRGTVDN-FREEIGMYMFWKPGMDI 291
N S +F+G+ K+ + + +DI+ D +R+ + M K GM I
Sbjct: 427 ENRNENDFVSMWFIGISFKK-LDNSDCVNIDLTYDIQSFTDTVYRQASNINML-KDGMTI 484
Query: 292 YVSHVRRRQLPSFVFPDGYKRPRPSRHFNEQAGKPCEDVKMCQSGSSGRHLKREKEHEME 351
+HV+++QL ++ P+ +R + S G D+ +G + + +++
Sbjct: 485 EATHVKKKQLHHYLPPELVQRKKKS------LG----DINRSSNGGGSKRCSLDSS-QLD 533
Query: 352 EVRPDKSVKRASISSEVPQPVSPGKTTGDSTN 383
R S + + +P P T D+++
Sbjct: 534 SSRDTDIGTPFSSPTPISKPCQPASTPEDNSS 565
>MGI|MGI:2442119 [details] [associations]
symbol:Papolg "poly(A) polymerase gamma" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004652 "polynucleotide
adenylyltransferase activity" evidence=IBA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IBA]
[GO:0006378 "mRNA polyadenylation" evidence=IBA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0016740 "transferase activity"
evidence=IEA] [GO:0016779 "nucleotidyltransferase activity"
evidence=IEA] [GO:0031123 "RNA 3'-end processing" evidence=IEA]
[GO:0043631 "RNA polyadenylation" evidence=IEA] [GO:0046872 "metal
ion binding" evidence=IEA] InterPro:IPR002934 InterPro:IPR007010
InterPro:IPR007012 InterPro:IPR011068 InterPro:IPR014492
Pfam:PF01909 Pfam:PF04926 Pfam:PF04928 PIRSF:PIRSF018425
MGI:MGI:2442119 GO:GO:0005524 GO:GO:0005634 GO:GO:0046872
GO:GO:0006378 GO:GO:0006351 GO:GO:0003723 GO:GO:0004652 KO:K14376
eggNOG:COG5186 Gene3D:3.30.70.590 SUPFAM:SSF55003
GeneTree:ENSGT00390000017928 HOGENOM:HOG000204376
HOVERGEN:HBG053502 CTD:64895 OMA:IDGSSKR OrthoDB:EOG4R23T8
EMBL:DQ103505 EMBL:AK035810 EMBL:AL662810 EMBL:BC059271
IPI:IPI00317437 RefSeq:NP_766143.2 UniGene:Mm.470599 HSSP:P25500
ProteinModelPortal:Q6PCL9 SMR:Q6PCL9 PhosphoSite:Q6PCL9
PaxDb:Q6PCL9 PRIDE:Q6PCL9 Ensembl:ENSMUST00000020513 GeneID:216578
KEGG:mmu:216578 UCSC:uc007ifp.2 InParanoid:Q6PCL9 NextBio:375224
Bgee:Q6PCL9 CleanEx:MM_PAPOLG Genevestigator:Q6PCL9
GermOnline:ENSMUSG00000020273 Uniprot:Q6PCL9
Length = 739
Score = 679 (244.1 bits), Expect = 8.7e-69, Sum P(2) = 8.7e-69
Identities = 144/312 (46%), Positives = 191/312 (61%)
Query: 2 SVLNNVDEQTVRSLNGCRVADQILKHVPNVEHFRMTLRCLKFWAKRRGVYSNVTGFLGGV 61
S L ++D + +RSLNGCRV D+IL VPN E FR+TLR +K WAKRRG+YSN+ GFLGGV
Sbjct: 187 SRLRSLDIRCIRSLNGCRVTDEILHLVPNKETFRLTLRAVKLWAKRRGIYSNMLGFLGGV 246
Query: 62 NWALLVARVCQLYPNAIPSMLVSRFFRVYTQWRWPNPVMLCPIEEDELGFSVWDPRKNPR 121
+WA+LVAR CQLYPNA S LV +FF V+++W WPNPV+L EE L VWDPR NP
Sbjct: 247 SWAMLVARTCQLYPNAAASTLVHKFFLVFSKWEWPNPVLLKQPEESNLNLPVWDPRVNPS 306
Query: 122 DRSHHMPIITPAYPCMNSSYNVSLSTLRVMTEQFQWGNRICEEIELNKAQWSALFEPYLF 181
DR H MPIITPAYP NS+YNVS ST VM E+F+ G + +EI K+ WS L EP F
Sbjct: 307 DRYHLMPIITPAYPQQNSTYNVSTSTRTVMVEEFKQGLAVTDEILQGKSDWSKLLEPPNF 366
Query: 182 FEAYKNYLQVDIVXXXXXXLLTWKGWVESRFRQLTLKIERDTNGLLQCHPYPNEYIDPSK 241
F+ Y++Y+ + L W G VES+ R L +ER+ + H P + +
Sbjct: 367 FQKYRHYIVLTASASTEENHLEWVGLVESKIRVLVGNLERN-EFITLAHVNPQSFPGNKE 425
Query: 242 --PCPN--SAFFMGL--RRKEGVTGKERQ-QFDIRGTVDN-FREEIGMYMFWKPGMDIYV 293
N S +F+G+ RR E +DI+ D +R+ + M K GM I
Sbjct: 426 HHKANNYVSMWFLGIIFRRVENAESVNIDLTYDIQSFTDTVYRQANNINML-KDGMKIEA 484
Query: 294 SHVRRRQLPSFV 305
+HV+++QL ++
Sbjct: 485 THVKKKQLHHYL 496
Score = 37 (18.1 bits), Expect = 8.7e-69, Sum P(2) = 8.7e-69
Identities = 8/26 (30%), Positives = 14/26 (53%)
Query: 293 VSHVRRRQLPSFVFPDGYKRPRPSRH 318
+ R+++LPS PD P P+ +
Sbjct: 701 IDTARKKRLPSKELPDS-SSPVPANN 725
>RGD|1310946 [details] [associations]
symbol:Papolb "poly (A) polymerase beta (testis specific)"
species:10116 "Rattus norvegicus" [GO:0005634 "nucleus"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO] [GO:0005783
"endoplasmic reticulum" evidence=ISO] InterPro:IPR002934
InterPro:IPR007010 InterPro:IPR007012 InterPro:IPR011068
InterPro:IPR014492 Pfam:PF01909 Pfam:PF04926 Pfam:PF04928
PIRSF:PIRSF018425 RGD:1310946 GO:GO:0005634 GO:GO:0006351
GO:GO:0003723 EMBL:CH474012 GO:GO:0004652 GO:GO:0043631 KO:K14376
Gene3D:3.30.70.590 SUPFAM:SSF55003 HOVERGEN:HBG053502 CTD:56903
EMBL:BC079046 IPI:IPI00363752 RefSeq:NP_001012020.1
UniGene:Rn.210888 SMR:Q6AYH1 GeneID:304300 KEGG:rno:304300
UCSC:RGD:1310946 NextBio:652828 Genevestigator:Q6AYH1
Uniprot:Q6AYH1
Length = 642
Score = 691 (248.3 bits), Expect = 4.4e-68, P = 4.4e-68
Identities = 168/428 (39%), Positives = 234/428 (54%)
Query: 2 SVLNNVDEQTVRSLNGCRVADQILKHVPNVEHFRMTLRCLKFWAKRRGVYSNVTGFLGGV 61
S+L N+D + +RSLNGCRV D+IL VPN++ FR+TLR +K WAK +YSN+ GFLGGV
Sbjct: 189 SLLKNLDIRCIRSLNGCRVTDEILHLVPNIDSFRLTLRAIKLWAKCHNIYSNILGFLGGV 248
Query: 62 NWALLVARVCQLYPNAIPSMLVSRFFRVYTQWRWPNPVMLCPIEEDELGFSVWDPRKNPR 121
+WA+LVAR CQLYPNAI S LV +FF V+++W WPNPV+L EE L VWDPR NP
Sbjct: 249 SWAMLVARTCQLYPNAIASTLVRKFFLVFSEWEWPNPVLLKEPEERNLNLPVWDPRVNPS 308
Query: 122 DRSHHMPIITPAYPCMNSSYNVSLSTLRVMTEQFQWGNRICEEIELNKAQWSALFEPYLF 181
DR H MPIITPAYP NS+YNVS+ST VM E+F+ G I EI LNKA+WS LFE F
Sbjct: 309 DRYHLMPIITPAYPQQNSTYNVSVSTRMVMIEEFKQGLAITHEILLNKAEWSKLFEAPSF 368
Query: 182 FEAYKNYLQVDIVXXXXXXLLTWKGWVESRFRQLTLKIERDTNGLL-----QCHPYPNEY 236
F+ YK+Y+ + L W G VES+ R L +E++ L Q P P E
Sbjct: 369 FQKYKHYIVLLASAPTEKQHLEWVGLVESKIRILVGSLEKNEFITLAHVNPQSFPAPKEN 428
Query: 237 IDPSKPCPNSAFFMGLRRKEGVTGKERQ---QFDIRGTVDN-FREEIGMYMFWKPGMDIY 292
+D + + + +GL K+ + +DI+ D +R+ I MF + M I
Sbjct: 429 VDKEEF--RTMWVIGLVLKKPENSEILSIDLTYDIQSFTDTVYRQAINSKMF-EMDMKIA 485
Query: 293 VSHVRRRQLPSFVFPDGYKRPRPSRHFNEQAGKPCEDVKMCQSGSSGRHLKREKEHEMEE 352
H+RR++L + P+ ++ E V++ S L + E+ M
Sbjct: 486 AMHLRRKELHQLL---------PNHVLQKKETHLTEGVRLTAVNDSSLLLSIDSENSMTA 536
Query: 353 VRPDKSVKRASISSEVPQPVSPGKTTGDSTNDSEVMSAGGHLVSEKDTMAAHM---QLDG 409
P ++K +++ PQ G ++ VM+A + D H+ + G
Sbjct: 537 PSPTGTIKTGPLTAN-PQ--------GRNSPALAVMAASVTNIQFPDVSLQHVNPIESSG 587
Query: 410 IVNHESVA 417
I ES+A
Sbjct: 588 IALSESIA 595
>MGI|MGI:1932115 [details] [associations]
symbol:Papolb "poly (A) polymerase beta (testis specific)"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IBA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0004652
"polynucleotide adenylyltransferase activity" evidence=ISS;ISA;IBA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0005783 "endoplasmic
reticulum" evidence=IPI] [GO:0006369 "termination of RNA polymerase
II transcription" evidence=IBA] [GO:0006378 "mRNA polyadenylation"
evidence=IBA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008152 "metabolic process" evidence=ISS] [GO:0016740
"transferase activity" evidence=IEA] [GO:0016779
"nucleotidyltransferase activity" evidence=IEA] [GO:0031123 "RNA
3'-end processing" evidence=IEA] [GO:0043631 "RNA polyadenylation"
evidence=ISA] [GO:0046872 "metal ion binding" evidence=IEA]
InterPro:IPR002934 InterPro:IPR007010 InterPro:IPR007012
InterPro:IPR011068 InterPro:IPR014492 Pfam:PF01909 Pfam:PF04926
Pfam:PF04928 PIRSF:PIRSF018425 MGI:MGI:1932115 GO:GO:0005783
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0046872
GO:GO:0006397 GO:GO:0006378 GO:GO:0006351 GO:GO:0003723
GO:GO:0000398 GO:GO:0006369 GO:GO:0004652 GO:GO:0043631 KO:K14376
eggNOG:COG5186 Gene3D:3.30.70.590 SUPFAM:SSF55003
HOVERGEN:HBG053502 CTD:56903 OMA:FPGGVAW OrthoDB:EOG4THVSN
EMBL:AF039957 EMBL:AB030729 IPI:IPI00230087 RefSeq:NP_064327.1
UniGene:Mm.441372 ProteinModelPortal:Q9WVP6 SMR:Q9WVP6
MINT:MINT-6167909 STRING:Q9WVP6 PhosphoSite:Q9WVP6 PaxDb:Q9WVP6
PRIDE:Q9WVP6 GeneID:56522 KEGG:mmu:56522 InParanoid:Q9WVP6
NextBio:312850 Bgee:Q9WVP6 CleanEx:MM_PAPOLB Genevestigator:Q9WVP6
Uniprot:Q9WVP6
Length = 641
Score = 686 (246.5 bits), Expect = 1.5e-67, P = 1.5e-67
Identities = 155/377 (41%), Positives = 212/377 (56%)
Query: 2 SVLNNVDEQTVRSLNGCRVADQILKHVPNVEHFRMTLRCLKFWAKRRGVYSNVTGFLGGV 61
S+L N+D + +RSLNGCRV D+IL VPN++ FR+TLR +K WAK +YSN+ GFLGGV
Sbjct: 188 SLLKNLDIRCIRSLNGCRVTDEILHLVPNIDSFRLTLRAIKLWAKCHNIYSNILGFLGGV 247
Query: 62 NWALLVARVCQLYPNAIPSMLVSRFFRVYTQWRWPNPVMLCPIEEDELGFSVWDPRKNPR 121
+WA+LVAR CQLYPNAI S LV +FF V+++W WPNPV+L EE L VWDPR NP
Sbjct: 248 SWAMLVARTCQLYPNAIASTLVRKFFLVFSEWEWPNPVLLKEPEERNLNLPVWDPRVNPS 307
Query: 122 DRSHHMPIITPAYPCMNSSYNVSLSTLRVMTEQFQWGNRICEEIELNKAQWSALFEPYLF 181
DR H MPIITPAYP NS+YNVS+ST VM E+F+ G I EI LNKA+WS LFE F
Sbjct: 308 DRYHLMPIITPAYPQQNSTYNVSVSTRMVMIEEFKQGLAITHEILLNKAEWSKLFEAPSF 367
Query: 182 FEAYKNYLQVDIVXXXXXXLLTWKGWVESRFRQLTLKIERDTNGLLQCHPYPNEYIDPSK 241
F+ YK+Y+ + L W G VES+ R L +E++ + H P + P +
Sbjct: 368 FQKYKHYIVLLASAPTEKQHLEWVGLVESKIRILVGSLEKN-EFITLAHVNPQSFPAPKE 426
Query: 242 PCPNSAF----FMGLRRKEGVTGKERQ---QFDIRGTVDN-FREEIGMYMFWKPGMDIYV 293
F +GL K+ + +DI+ D +R+ I MF + M I
Sbjct: 427 TADKEEFRTMWVIGLVLKKPENSEILSIDLTYDIQSFTDTVYRQAINSKMF-EMDMKIAA 485
Query: 294 SHVRRRQLPSFVFPDGYKRPRPSRHFNEQAGKPCEDVKMCQSGSSGRHLKREKEHEMEEV 353
H+RR++L + P+ ++ E V++ S L + E+ M
Sbjct: 486 MHLRRKELHQLL---------PNHVLQKKETHLTESVRLTAVTDSSLLLSIDSENSMTAP 536
Query: 354 RPDKSVKRASISSEVPQ 370
P ++K ++ PQ
Sbjct: 537 SPTGTMKTGPLTGN-PQ 552
>UNIPROTKB|Q9NRJ5 [details] [associations]
symbol:PAPOLB "Poly(A) polymerase beta" species:9606 "Homo
sapiens" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0005783 "endoplasmic reticulum" evidence=IEA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IBA]
[GO:0004652 "polynucleotide adenylyltransferase activity"
evidence=IBA] [GO:0005634 "nucleus" evidence=IBA] [GO:0005737
"cytoplasm" evidence=IBA] [GO:0006369 "termination of RNA
polymerase II transcription" evidence=IBA] [GO:0006378 "mRNA
polyadenylation" evidence=IBA] InterPro:IPR002934
InterPro:IPR007010 InterPro:IPR007012 InterPro:IPR011068
InterPro:IPR014492 Pfam:PF01909 Pfam:PF04926 Pfam:PF04928
PIRSF:PIRSF018425 GO:GO:0005783 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0046872 GO:GO:0006378 GO:GO:0003723
EMBL:AC092610 GO:GO:0000398 GO:GO:0006369 GO:GO:0004652 KO:K14376
eggNOG:COG5186 Gene3D:3.30.70.590 SUPFAM:SSF55003
HOVERGEN:HBG053502 EMBL:AF218840 EMBL:BC036653 IPI:IPI00024525
RefSeq:NP_064529.4 UniGene:Hs.487409 ProteinModelPortal:Q9NRJ5
SMR:Q9NRJ5 STRING:Q9NRJ5 PhosphoSite:Q9NRJ5 DMDM:18203318
PaxDb:Q9NRJ5 PRIDE:Q9NRJ5 DNASU:56903 Ensembl:ENST00000404991
GeneID:56903 KEGG:hsa:56903 CTD:56903 GeneCards:GC07M004897
HGNC:HGNC:15970 MIM:607436 neXtProt:NX_Q9NRJ5 PharmGKB:PA32933
InParanoid:Q9NRJ5 OMA:FPGGVAW OrthoDB:EOG4THVSN GenomeRNAi:56903
NextBio:62363 ArrayExpress:Q9NRJ5 Bgee:Q9NRJ5 CleanEx:HS_PAPOLB
Genevestigator:Q9NRJ5 Uniprot:Q9NRJ5
Length = 636
Score = 685 (246.2 bits), Expect = 1.9e-67, P = 1.9e-67
Identities = 143/309 (46%), Positives = 193/309 (62%)
Query: 2 SVLNNVDEQTVRSLNGCRVADQILKHVPNVEHFRMTLRCLKFWAKRRGVYSNVTGFLGGV 61
S+L N+D + +RSLNGCRV D+IL VPN+++FR+TLR +K WAK +YSN+ GFLGGV
Sbjct: 188 SLLKNLDIRCIRSLNGCRVTDEILHLVPNIDNFRLTLRAIKLWAKCHNIYSNILGFLGGV 247
Query: 62 NWALLVARVCQLYPNAIPSMLVSRFFRVYTQWRWPNPVMLCPIEEDELGFSVWDPRKNPR 121
+WA+LVAR CQLYPNA+ S LV +FF V+++W WPNPV+L EE L VWDPR NP
Sbjct: 248 SWAMLVARTCQLYPNAVASTLVRKFFLVFSEWEWPNPVLLKEPEERNLNLPVWDPRVNPS 307
Query: 122 DRSHHMPIITPAYPCMNSSYNVSLSTLRVMTEQFQWGNRICEEIELNKAQWSALFEPYLF 181
DR H MPIITPAYP NS+YNVS+ST VM E+F+ G I EI L+KA+WS LFE F
Sbjct: 308 DRYHLMPIITPAYPQQNSTYNVSISTRMVMIEEFKQGLAITHEILLSKAEWSKLFEAPSF 367
Query: 182 FEAYKNYLQVDIVXXXXXXLLTWKGWVESRFRQLTLKIERDTNGLLQCHPYPNEYIDPSK 241
F+ YK+Y+ + L W G VES+ R L +E++ + H P + P K
Sbjct: 368 FQKYKHYIVLLASASTEKQHLEWVGLVESKIRILVGSLEKN-EFITLAHVNPQSFPAP-K 425
Query: 242 PCPNSAFF-------MGLRRKEGVTGKERQ-QFDIRGTVDN-FREEIGMYMFWKPGMDIY 292
P+ F +GL++ + +DI+ D +R+ + MF + GM I
Sbjct: 426 ENPDMEEFRTMWVIGLGLKKPDNSEILSIDLTYDIQSFTDTVYRQAVNSKMF-EMGMKIT 484
Query: 293 VSHVRRRQL 301
H+RR++L
Sbjct: 485 AMHLRRKEL 493
>ZFIN|ZDB-GENE-030131-3507 [details] [associations]
symbol:papola "poly(A) polymerase alpha"
species:7955 "Danio rerio" [GO:0016779 "nucleotidyltransferase
activity" evidence=IEA] [GO:0043631 "RNA polyadenylation"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0004652
"polynucleotide adenylyltransferase activity" evidence=IEA;IBA]
[GO:0005634 "nucleus" evidence=IEA;IBA] [GO:0031123 "RNA 3'-end
processing" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IBA]
[GO:0006378 "mRNA polyadenylation" evidence=IBA] InterPro:IPR002934
InterPro:IPR007010 InterPro:IPR007012 InterPro:IPR011068
InterPro:IPR014492 Pfam:PF01909 Pfam:PF04926 Pfam:PF04928
PIRSF:PIRSF018425 ZFIN:ZDB-GENE-030131-3507 GO:GO:0005634
GO:GO:0005737 GO:GO:0006378 GO:GO:0006351 GO:GO:0003723
GO:GO:0004652 EMBL:AL953887 KO:K14376 Gene3D:3.30.70.590
SUPFAM:SSF55003 CTD:10914 GeneTree:ENSGT00390000017928
HOGENOM:HOG000204376 HOVERGEN:HBG053502 IPI:IPI00860939
RefSeq:NP_991321.2 UniGene:Dr.25690 SMR:Q5SNY2
Ensembl:ENSDART00000053858 GeneID:404041 KEGG:dre:404041
NextBio:20817515 Uniprot:Q5SNY2
Length = 723
Score = 685 (246.2 bits), Expect = 1.9e-67, P = 1.9e-67
Identities = 166/430 (38%), Positives = 236/430 (54%)
Query: 3 VLNNVDEQTVRSLNGCRVADQILKHVPNVEHFRMTLRCLKFWAKRRGVYSNVTGFLGGVN 62
+L N+D + +RSLNGCRV D+IL VPN+E+FR+TLR +K WAKR +YSN+ GFLGGV+
Sbjct: 188 LLKNLDIRCIRSLNGCRVTDEILHLVPNIENFRLTLRAIKLWAKRHNIYSNILGFLGGVS 247
Query: 63 WALLVARVCQLYPNAIPSMLVSRFFRVYTQWRWPNPVMLCPIEEDELGFSVWDPRKNPRD 122
WA+LVAR CQLYPNA+ + LV +FF V+++W WPNPV+L E+ L VWDPR P D
Sbjct: 248 WAMLVARTCQLYPNAVAATLVHKFFLVFSKWEWPNPVLLKQPEDCNLNLPVWDPRVTPSD 307
Query: 123 RSHHMPIITPAYPCMNSSYNVSLSTLRVMTEQFQWGNRICEEIELNKAQWSALFEPYLFF 182
R H MPIITPAYP NS+YNVS ST +M E+F+ G I +EI NKA WS LFE FF
Sbjct: 308 RYHLMPIITPAYPQQNSTYNVSASTRAIMVEEFKRGLAITDEILQNKADWSKLFEAPNFF 367
Query: 183 EAYKNYLQVDIVXXXXXXLLTWKGWVESRFRQLTLKIERDTNGLLQCHPYPNEYIDPSKP 242
+ YK+Y+ + L W G VES+ R L +E++ + H P + P +
Sbjct: 368 QKYKHYIVLLASAQTEKQHLEWVGLVESKIRILVGNLEKN-EFITLAHVNPQSFPGPKEG 426
Query: 243 CPNSAF----FMGLRRKEGVTGKERQQ----FDIRGTVDN-FREEIGMYMFWKPGMDIYV 293
F +G+ K+ + G E FDI+ D +R+ I MF + M I
Sbjct: 427 NDKEEFSTMWVIGIVFKK-MEGSENLNVDLTFDIQSFTDTVYRQAITSKMF-EQDMKITA 484
Query: 294 SHVRRRQLPSFVFPDGYKRPRPSRHFNEQAGKPCEDVKMCQSGSSGRHLKREKEHEMEEV 353
HV+R+QL + P + H +++ K D + S+ L + ++ M
Sbjct: 485 MHVKRKQLHQLL-------PEVAIHRSKR--KHSSDGVRAMNDSN-LDLSLDSDNSMSVP 534
Query: 354 RPDKSVKRASISSEVPQPVSPGKTTGDSTNDSEVMS---AGG---HLVSEKDTMAAHMQL 407
P ++++ + SP +TG +TN SE+ A G HL S T +++
Sbjct: 535 SPT-----GPSAAKIARAPSPQGSTGTATNTSELQGKTEATGENTHLASVDGTSSSNASG 589
Query: 408 DGIVNHESVA 417
G +S +
Sbjct: 590 KGAAPPQSTS 599
>RGD|1310337 [details] [associations]
symbol:Papolg "poly(A) polymerase gamma" species:10116 "Rattus
norvegicus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0004652
"polynucleotide adenylyltransferase activity" evidence=IBA]
[GO:0005634 "nucleus" evidence=IBA] [GO:0006378 "mRNA
polyadenylation" evidence=IBA] InterPro:IPR002934
InterPro:IPR007010 InterPro:IPR007012 InterPro:IPR011068
InterPro:IPR014492 Pfam:PF01909 Pfam:PF04926 Pfam:PF04928
PIRSF:PIRSF018425 RGD:1310337 GO:GO:0005634 GO:GO:0006378
GO:GO:0006351 GO:GO:0003723 GO:GO:0004652 KO:K14376
Gene3D:3.30.70.590 SUPFAM:SSF55003 GeneTree:ENSGT00390000017928
CTD:64895 OrthoDB:EOG4R23T8 EMBL:CH473996 IPI:IPI00365079
RefSeq:NP_001100714.1 UniGene:Rn.27992 Ensembl:ENSRNOT00000008919
GeneID:305586 KEGG:rno:305586 UCSC:RGD:1310337 NextBio:654829
Uniprot:D3ZAN6
Length = 739
Score = 682 (245.1 bits), Expect = 4.0e-67, P = 4.0e-67
Identities = 158/397 (39%), Positives = 220/397 (55%)
Query: 2 SVLNNVDEQTVRSLNGCRVADQILKHVPNVEHFRMTLRCLKFWAKRRGVYSNVTGFLGGV 61
S L ++D + +RSLNGCRV D+IL VPN E FR+TLR +K WAKRRG+YSN+ GFLGGV
Sbjct: 187 SRLRSLDIRCIRSLNGCRVTDEILHLVPNKETFRLTLRAVKLWAKRRGIYSNMLGFLGGV 246
Query: 62 NWALLVARVCQLYPNAIPSMLVSRFFRVYTQWRWPNPVMLCPIEEDELGFSVWDPRKNPR 121
+WA+LVAR CQLYPNA S LV +FF V+++W WPNPV+L EE L VWDPR NP
Sbjct: 247 SWAMLVARTCQLYPNAAASTLVHKFFLVFSKWEWPNPVLLKQPEESNLNLPVWDPRVNPS 306
Query: 122 DRSHHMPIITPAYPCMNSSYNVSLSTLRVMTEQFQWGNRICEEIELNKAQWSALFEPYLF 181
DR H MPIITPAYP NS+YNVS ST VM E+F+ G + +EI K+ WS L EP F
Sbjct: 307 DRYHLMPIITPAYPQQNSTYNVSTSTRTVMVEEFKQGLAVTDEILQGKSDWSKLLEPPNF 366
Query: 182 FEAYKNYLQVDIVXXXXXXLLTWKGWVESRFRQLTLKIERDTNGLLQCHPYPNEYIDPSK 241
F+ Y++Y+ + L W G VES+ R L +ER+ + H P + +
Sbjct: 367 FQKYRHYIVLTASASTEENHLEWVGLVESKIRVLVGNLERN-EFITLAHVNPQSFPGNKE 425
Query: 242 --PCPN--SAFFMGL--RRKEGVTGKERQ-QFDIRGTVDN-FREEIGMYMFWKPGMDIYV 293
N S +F+G+ RR E +DI+ D +R+ + M K GM I
Sbjct: 426 HHKANNYVSMWFLGIIFRRVENAESVNIDLTYDIQSFTDTVYRQANNINML-KDGMKIEA 484
Query: 294 SHVRRRQLPSFVFPDGYKRPRPSRHFNEQAGKPCEDVKMCQSGSSGRHLKREKEHEMEEV 353
+HV+++QL ++ P+ ++ K DV G + + ++
Sbjct: 485 THVKKKQLHHYL---------PAEILQKKK-KSLSDVSRSSGGLQSKRSSLDSNC-LDSS 533
Query: 354 RPDKSVKRASISSEVPQPVSPGKTTGDST-NDSEVMS 389
R S + +P +P TGD+ +++E M+
Sbjct: 534 RDTDSGTPFNSPGSAHKPSNPDSPTGDAERSNAEPMA 570
>UNIPROTKB|I3LRR6 [details] [associations]
symbol:PAPOLB "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005783 "endoplasmic reticulum" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0043631 "RNA
polyadenylation" evidence=IEA] [GO:0004652 "polynucleotide
adenylyltransferase activity" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR002934 InterPro:IPR007010
InterPro:IPR007012 InterPro:IPR011068 InterPro:IPR014492
Pfam:PF01909 Pfam:PF04926 Pfam:PF04928 PIRSF:PIRSF018425
GO:GO:0005783 GO:GO:0005634 GO:GO:0006351 GO:GO:0003723
GO:GO:0004652 GO:GO:0043631 Gene3D:3.30.70.590 SUPFAM:SSF55003
GeneTree:ENSGT00390000017928 OMA:FPGGVAW EMBL:CU928347
Ensembl:ENSSSCT00000031977 Uniprot:I3LRR6
Length = 636
Score = 681 (244.8 bits), Expect = 5.1e-67, P = 5.1e-67
Identities = 152/328 (46%), Positives = 199/328 (60%)
Query: 2 SVLNNVDEQTVRSLNGCRVADQILKHVPNVEHFRMTLRCLKFWAKRRGVYSNVTGFLGGV 61
S+L N+D + +RSLNGCRV D+IL VPN+++FR+TLR +K WAK +YSN+ GFLGGV
Sbjct: 202 SLLKNLDIRCIRSLNGCRVTDEILHLVPNIDNFRLTLRAVKLWAKCHNIYSNILGFLGGV 261
Query: 62 NWALLVARVCQLYPNAIPSMLVSRFFRVYTQWRWPNPVMLCPIEEDELGFSVWDPRKNPR 121
+WA+LVAR CQLYPNAI S LV +FF V+++W WPNPV+L EE L VWDPR NP
Sbjct: 262 SWAMLVARTCQLYPNAIASTLVRKFFLVFSEWEWPNPVLLKEPEERNLNLPVWDPRVNPS 321
Query: 122 DRSHHMPIITPAYPCMNSSYNVSLSTLRVMTEQFQWGNRICEEIELNKAQWSALFEPYLF 181
DR H MPIITPAYP NS+YNVS+ST VM E+F+ G I EI L+KA+WS LFE F
Sbjct: 322 DRYHLMPIITPAYPQQNSTYNVSVSTRMVMIEEFKQGLAITHEILLSKAEWSKLFEAPSF 381
Query: 182 FEAYKNYLQVDIVXXXXXXLLTWKGWVESRFRQLTLKIERDTNGLL-----QCHPYPNEY 236
F+ YK+Y+ + L W G VES+ R L +E++ L Q P P E
Sbjct: 382 FQKYKHYIALLASAPTEKQHLEWVGLVESKIRILVGSLEKNEFITLAHVNPQSFPAPRE- 440
Query: 237 IDPSKPCPNSAFFMGL--RRKEGVTGKERQ-QFDIRGTVDN-FREEIGMYMFWKPGMDIY 292
P K + + +GL +R E +DI+ D +R+ + MF + M I
Sbjct: 441 -SPDKEEFRTMWVIGLVLKRPENSDILSIDLTYDIQSFTDTVYRQAVNSKMF-EMDMKIA 498
Query: 293 VSHVRRRQL----PSFVFPDGYKRPRPS 316
H+RR++L P+ V P K P S
Sbjct: 499 AMHLRRKELHQLLPNHVLPQK-KTPSHS 525
>UNIPROTKB|A5D7N5 [details] [associations]
symbol:PAPOLG "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0006378 "mRNA polyadenylation" evidence=IBA]
[GO:0005634 "nucleus" evidence=IBA] [GO:0004652 "polynucleotide
adenylyltransferase activity" evidence=IBA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR002934 InterPro:IPR007010
InterPro:IPR007012 InterPro:IPR011068 InterPro:IPR014492
Pfam:PF01909 Pfam:PF04926 Pfam:PF04928 PIRSF:PIRSF018425
GO:GO:0005634 GO:GO:0006378 GO:GO:0006351 GO:GO:0003723
GO:GO:0004652 KO:K14376 eggNOG:COG5186 Gene3D:3.30.70.590
SUPFAM:SSF55003 GeneTree:ENSGT00390000017928 HOGENOM:HOG000204376
HOVERGEN:HBG053502 CTD:64895 OMA:IDGSSKR OrthoDB:EOG4R23T8
EMBL:DAAA02031008 EMBL:DAAA02031009 EMBL:BC140625 IPI:IPI00695296
RefSeq:NP_001091535.1 UniGene:Bt.24299 SMR:A5D7N5
Ensembl:ENSBTAT00000009749 GeneID:529071 KEGG:bta:529071
InParanoid:A5D7N5 NextBio:20874959 Uniprot:A5D7N5
Length = 740
Score = 678 (243.7 bits), Expect = 1.1e-66, P = 1.1e-66
Identities = 143/312 (45%), Positives = 191/312 (61%)
Query: 2 SVLNNVDEQTVRSLNGCRVADQILKHVPNVEHFRMTLRCLKFWAKRRGVYSNVTGFLGGV 61
S L ++D + +RSLNGCRV D+IL VPN E FR+TLR +K WAKRRG+YSN+ GFLGGV
Sbjct: 187 SRLRSLDIRCIRSLNGCRVTDEILHLVPNKETFRLTLRAVKLWAKRRGIYSNMLGFLGGV 246
Query: 62 NWALLVARVCQLYPNAIPSMLVSRFFRVYTQWRWPNPVMLCPIEEDELGFSVWDPRKNPR 121
+WA+LVAR CQLYPNA S LV +FF V+++W WPNPV+L EE L VWDPR NP
Sbjct: 247 SWAMLVARTCQLYPNAAASTLVHKFFLVFSKWEWPNPVLLKQPEESNLNLPVWDPRVNPS 306
Query: 122 DRSHHMPIITPAYPCMNSSYNVSLSTLRVMTEQFQWGNRICEEIELNKAQWSALFEPYLF 181
DR H MPIITPAYP NS+YNVS ST VM E+F+ G + +EI K+ WS L EP F
Sbjct: 307 DRYHLMPIITPAYPQQNSTYNVSTSTRTVMVEEFKQGLAVTDEILQGKSDWSKLLEPPNF 366
Query: 182 FEAYKNYLQVDIVXXXXXXLLTWKGWVESRFRQLTLKIERDTNGLLQCHPYPNEYIDPSK 241
F+ Y++Y+ + L W G VES+ R L +ER+ + H P + +
Sbjct: 367 FQKYRHYIVLTASASTEENHLEWVGLVESKIRVLVGNLERN-EFITLAHVNPQSFPGNKE 425
Query: 242 PCPN----SAFFMGL--RRKEGVTGKERQ-QFDIRGTVDN-FREEIGMYMFWKPGMDIYV 293
+ S +F+G+ RR E +DI+ D +R+ + M K GM I
Sbjct: 426 HHKDNNYVSMWFLGIIFRRVENAESVNIDLTYDIQSFTDTVYRQANNINML-KEGMKIEA 484
Query: 294 SHVRRRQLPSFV 305
+HV+++QL ++
Sbjct: 485 THVKKKQLHHYL 496
>UNIPROTKB|J9NS30 [details] [associations]
symbol:PAPOLG "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0043631 "RNA polyadenylation" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0004652 "polynucleotide
adenylyltransferase activity" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR002934 InterPro:IPR007010
InterPro:IPR007012 InterPro:IPR011068 InterPro:IPR014492
Pfam:PF01909 Pfam:PF04926 Pfam:PF04928 PIRSF:PIRSF018425
GO:GO:0005634 GO:GO:0006351 GO:GO:0003723 GO:GO:0004652
GO:GO:0043631 Gene3D:3.30.70.590 SUPFAM:SSF55003
GeneTree:ENSGT00390000017928 OMA:IDGSSKR EMBL:AAEX03007549
Ensembl:ENSCAFT00000044895 Uniprot:J9NS30
Length = 813
Score = 673 (242.0 bits), Expect = 3.6e-66, P = 3.6e-66
Identities = 142/312 (45%), Positives = 191/312 (61%)
Query: 2 SVLNNVDEQTVRSLNGCRVADQILKHVPNVEHFRMTLRCLKFWAKRRGVYSNVTGFLGGV 61
S L ++D + +RSLNGCRV ++IL VPN E FR+TLR +K WAKRRG+YSN+ GFLGGV
Sbjct: 187 SRLRSLDIRCIRSLNGCRVTNEILHLVPNKETFRLTLRAVKLWAKRRGIYSNMLGFLGGV 246
Query: 62 NWALLVARVCQLYPNAIPSMLVSRFFRVYTQWRWPNPVMLCPIEEDELGFSVWDPRKNPR 121
+WA+LVAR CQLYPNA S LV +FF V+++W WPNPV+L EE L VWDPR NP
Sbjct: 247 SWAMLVARTCQLYPNAAASTLVHKFFLVFSKWEWPNPVLLKQPEESNLNLPVWDPRVNPS 306
Query: 122 DRSHHMPIITPAYPCMNSSYNVSLSTLRVMTEQFQWGNRICEEIELNKAQWSALFEPYLF 181
DR H MPIITPAYP NS+YNVS ST VM E+F+ G + +EI K+ WS L EP F
Sbjct: 307 DRYHLMPIITPAYPQQNSTYNVSTSTRTVMVEEFKQGLAVTDEILQGKSDWSKLLEPPNF 366
Query: 182 FEAYKNYLQVDIVXXXXXXLLTWKGWVESRFRQLTLKIERDTNGLLQCHPYPNEYIDPSK 241
F+ Y++Y+ + L W G VES+ R L +ER+ + H P + +
Sbjct: 367 FQKYRHYIVLTASASTEENHLEWVGLVESKIRVLVGNLERN-EFITLAHVNPQSFPGNKE 425
Query: 242 PCPN----SAFFMGL--RRKEGVTGKERQ-QFDIRGTVDN-FREEIGMYMFWKPGMDIYV 293
+ S +F+G+ RR E +DI+ D +R+ + M K GM I
Sbjct: 426 HHKDNNYVSMWFLGIIFRRVENAESVNIDLTYDIQSFTDTVYRQANNINML-KEGMKIEA 484
Query: 294 SHVRRRQLPSFV 305
+HV+++QL ++
Sbjct: 485 THVKKKQLHHYL 496
>FB|FBgn0015949 [details] [associations]
symbol:hrg "hiiragi" species:7227 "Drosophila melanogaster"
[GO:0004652 "polynucleotide adenylyltransferase activity"
evidence=ISS;IDA;NAS] [GO:0006378 "mRNA polyadenylation"
evidence=ISS;IBA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IBA] InterPro:IPR002934
InterPro:IPR007010 InterPro:IPR007012 InterPro:IPR011068
InterPro:IPR014492 Pfam:PF01909 Pfam:PF04926 Pfam:PF04928
PIRSF:PIRSF018425 GO:GO:0005634 GO:GO:0006378 GO:GO:0006351
GO:GO:0003723 GO:GO:0004652 eggNOG:COG5186 Gene3D:3.30.70.590
SUPFAM:SSF55003 HSSP:P25500 EMBL:AY113434 ProteinModelPortal:Q8MZ09
SMR:Q8MZ09 STRING:Q8MZ09 PaxDb:Q8MZ09 PRIDE:Q8MZ09
FlyBase:FBgn0015949 InParanoid:Q8MZ09 OrthoDB:EOG42547T ChiTaRS:HRG
ArrayExpress:Q8MZ09 Bgee:Q8MZ09 Uniprot:Q8MZ09
Length = 659
Score = 596 (214.9 bits), Expect = 1.4e-64, Sum P(2) = 1.4e-64
Identities = 113/231 (48%), Positives = 153/231 (66%)
Query: 2 SVLNNVDEQTVRSLNGCRVADQILKHVPNVEHFRMTLRCLKFWAKRRGVYSNVTGFLGGV 61
++L N+D ++VRSLNGCRV D+IL VPN+E+FR+ LR +K WAK+ G+YSN G+ GGV
Sbjct: 196 NLLRNLDHRSVRSLNGCRVTDEILALVPNIENFRLALRTIKLWAKKHGIYSNSLGYFGGV 255
Query: 62 NWALLVARVCQLYPNAIPSMLVSRFFRVYTQWRWPNPVMLCPIEEDELGFSVWDPRKNPR 121
WA+LVAR CQLYPNA + LV +FF V+++W+WPNPV+L + L F VWDPR N
Sbjct: 256 TWAMLVARTCQLYPNAAAATLVHKFFLVFSRWKWPNPVLLKHPDNVNLRFQVWDPRVNAS 315
Query: 122 DRSHHMPIITPAYPCMNSSYNVSLSTLRVMTEQFQWGNRICEEIELNKAQWSALFEPYLF 181
DR H MPIITPAYP NS++NVS ST +V+ +F G I +EI L + W LFE F
Sbjct: 316 DRYHLMPIITPAYPQQNSTFNVSESTKKVILTEFNRGMNITDEIMLGRIPWERLFEAPSF 375
Query: 182 FEAYKNYLQVDIVXXXXXXLLTWKGWVESRFRQLTLKIERDTN-GLLQCHP 231
F Y++++ + + L W G VES+ R L +ER+ + L +P
Sbjct: 376 FYRYRHFIVLLVNSQTADDHLEWCGLVESKVRLLISNLERNPHIALAHVNP 426
Score = 80 (33.2 bits), Expect = 1.4e-64, Sum P(2) = 1.4e-64
Identities = 24/75 (32%), Positives = 36/75 (48%)
Query: 246 SAFFMGLRRKEGVTGKERQQFDIRGTVDNFREEIGMY----MFWKPGMDIYVSHVRRRQL 301
S +F+GL + E D+ ++ NF E + M+ K GM I HV+R+QL
Sbjct: 467 SMWFIGLEFERS----ENLNVDLTESIQNFTEHVMMHGVNIKMLKEGMTIDARHVKRKQL 522
Query: 302 PSFVFPDGYKRPRPS 316
++ D KR R S
Sbjct: 523 SLYLDSDFLKRERKS 537
>UNIPROTKB|F1NL95 [details] [associations]
symbol:F1NL95 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0008811
"chloramphenicol O-acetyltransferase activity" evidence=IEA]
[GO:0004652 "polynucleotide adenylyltransferase activity"
evidence=IBA] [GO:0005634 "nucleus" evidence=IBA] [GO:0006378 "mRNA
polyadenylation" evidence=IBA] InterPro:IPR001707
InterPro:IPR002934 InterPro:IPR007010 InterPro:IPR007012
InterPro:IPR011068 InterPro:IPR014492 Pfam:PF01909 Pfam:PF04926
Pfam:PF04928 PIRSF:PIRSF018425 ProDom:PD002660 GO:GO:0005634
GO:GO:0006378 GO:GO:0006351 GO:GO:0003723 GO:GO:0004652
Gene3D:3.30.70.590 SUPFAM:SSF55003 GeneTree:ENSGT00390000017928
GO:GO:0008811 EMBL:AADN02046885 EMBL:AADN02046884 IPI:IPI00600779
Ensembl:ENSGALT00000012751 OMA:RYHVMPI Uniprot:F1NL95
Length = 748
Score = 633 (227.9 bits), Expect = 6.2e-62, P = 6.2e-62
Identities = 126/283 (44%), Positives = 176/283 (62%)
Query: 2 SVLNNVDEQTVRSLNGCRVADQILKHVPNVEHFRMTLRCLKFWAKRRGVYSNVTGFLGGV 61
S L ++D + +RSLNGCRV D+IL VPN E+F++TLR +K WAKRRG+YSN+ GFLGGV
Sbjct: 187 SRLRSLDIRCIRSLNGCRVTDEILHLVPNKENFQLTLRAIKLWAKRRGIYSNMLGFLGGV 246
Query: 62 NWALLVARVCQLYPNAIPSMLVSRFFRVYTQWRWPNPVMLCPIEEDELGFSVWDPRKNPR 121
+WA+LVAR CQL+PNA+ S LV +FF ++++W WPNPV+L EE+ L VWDPR NP
Sbjct: 247 SWAMLVARTCQLHPNALASTLVHKFFLIFSKWEWPNPVLLKQPEENNLNLPVWDPRVNPS 306
Query: 122 DRSHHMPIITPAYPCMNSSYNVSLSTLRVMTEQFQWGNRICEEIELNKAQWSALFEPYLF 181
DR H MPIITPAYP NS+YNVS ST V+ E+ + G + EI ++ W LFE F
Sbjct: 307 DRYHVMPIITPAYPQQNSTYNVSTSTRAVVVEELKHGLAVTNEILQGRSDWPKLFEQPNF 366
Query: 182 FEAYKNYLQVDIVXXXXXXLLTWKGWVESRFRQLTLKIERDTNGLLQ-CHPYPNEYIDPS 240
F+ YK+Y+ + L W G VES+ R L +ER N + H P +
Sbjct: 367 FQKYKHYIVLTASTYTEEHHLEWVGLVESKIRVLVGNLER--NEFINIAHVNPQSFPGNQ 424
Query: 241 KPCPNSAF----FMGLRRKEGVTGKERQQFDIRGTVDNFREEI 279
+ C S + F+G+ ++ + E + D+ + +F + +
Sbjct: 425 EHCKQSRYVSMWFLGIIFRK-LESAESTKIDLTYDIQSFTDAV 466
>UNIPROTKB|F1P3A1 [details] [associations]
symbol:F1P3A1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0004652
"polynucleotide adenylyltransferase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0008811 "chloramphenicol
O-acetyltransferase activity" evidence=IEA] [GO:0043631 "RNA
polyadenylation" evidence=IEA] InterPro:IPR001707
InterPro:IPR002934 InterPro:IPR007010 InterPro:IPR007012
InterPro:IPR011068 InterPro:IPR014492 Pfam:PF01909 Pfam:PF04926
Pfam:PF04928 PIRSF:PIRSF018425 ProDom:PD002660 GO:GO:0005634
GO:GO:0006351 GO:GO:0003723 GO:GO:0004652 GO:GO:0043631
Gene3D:3.30.70.590 SUPFAM:SSF55003 GeneTree:ENSGT00390000017928
GO:GO:0008811 EMBL:AADN02046885 EMBL:AADN02046884 IPI:IPI00820385
Ensembl:ENSGALT00000040310 Uniprot:F1P3A1
Length = 738
Score = 633 (227.9 bits), Expect = 6.2e-62, P = 6.2e-62
Identities = 126/283 (44%), Positives = 176/283 (62%)
Query: 2 SVLNNVDEQTVRSLNGCRVADQILKHVPNVEHFRMTLRCLKFWAKRRGVYSNVTGFLGGV 61
S L ++D + +RSLNGCRV D+IL VPN E+F++TLR +K WAKRRG+YSN+ GFLGGV
Sbjct: 187 SRLRSLDIRCIRSLNGCRVTDEILHLVPNKENFQLTLRAIKLWAKRRGIYSNMLGFLGGV 246
Query: 62 NWALLVARVCQLYPNAIPSMLVSRFFRVYTQWRWPNPVMLCPIEEDELGFSVWDPRKNPR 121
+WA+LVAR CQL+PNA+ S LV +FF ++++W WPNPV+L EE+ L VWDPR NP
Sbjct: 247 SWAMLVARTCQLHPNALASTLVHKFFLIFSKWEWPNPVLLKQPEENNLNLPVWDPRVNPS 306
Query: 122 DRSHHMPIITPAYPCMNSSYNVSLSTLRVMTEQFQWGNRICEEIELNKAQWSALFEPYLF 181
DR H MPIITPAYP NS+YNVS ST V+ E+ + G + EI ++ W LFE F
Sbjct: 307 DRYHVMPIITPAYPQQNSTYNVSTSTRAVVVEELKHGLAVTNEILQGRSDWPKLFEQPNF 366
Query: 182 FEAYKNYLQVDIVXXXXXXLLTWKGWVESRFRQLTLKIERDTNGLLQ-CHPYPNEYIDPS 240
F+ YK+Y+ + L W G VES+ R L +ER N + H P +
Sbjct: 367 FQKYKHYIVLTASTYTEEHHLEWVGLVESKIRVLVGNLER--NEFINIAHVNPQSFPGNQ 424
Query: 241 KPCPNSAF----FMGLRRKEGVTGKERQQFDIRGTVDNFREEI 279
+ C S + F+G+ ++ + E + D+ + +F + +
Sbjct: 425 EHCKQSRYVSMWFLGIIFRK-LESAESTKIDLTYDIQSFTDAV 466
>POMBASE|SPBC646.04 [details] [associations]
symbol:pla1 "poly(A) polymerase Pla1" species:4896
"Schizosaccharomyces pombe" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0004652 "polynucleotide adenylyltransferase activity"
evidence=IGI] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0005829 "cytosol" evidence=IDA]
[GO:0005847 "mRNA cleavage and polyadenylation specificity factor
complex" evidence=IGI] [GO:0006378 "mRNA polyadenylation"
evidence=IGI] [GO:0046872 "metal ion binding" evidence=IEA]
InterPro:IPR002934 InterPro:IPR007010 InterPro:IPR007012
InterPro:IPR011068 InterPro:IPR014492 Pfam:PF01909 Pfam:PF04926
Pfam:PF04928 PIRSF:PIRSF018425 PomBase:SPBC646.04 GO:GO:0005829
GO:GO:0005524 GO:GO:0046872 EMBL:CU329671 GO:GO:0006378
GO:GO:0006351 GenomeReviews:CU329671_GR GO:GO:0003723 GO:GO:0005847
GO:GO:0004652 KO:K14376 eggNOG:COG5186 Gene3D:3.30.70.590
SUPFAM:SSF55003 HOGENOM:HOG000204376 OMA:FPGGVAW EMBL:X79705
EMBL:AB027883 PIR:JC6058 RefSeq:NP_595362.1
ProteinModelPortal:Q10295 SMR:Q10295 MINT:MINT-2730388
STRING:Q10295 EnsemblFungi:SPBC646.04.1 GeneID:2541099
KEGG:spo:SPBC646.04 OrthoDB:EOG4SR150 NextBio:20802212
Uniprot:Q10295
Length = 566
Score = 589 (212.4 bits), Expect = 4.2e-61, Sum P(2) = 4.2e-61
Identities = 107/242 (44%), Positives = 156/242 (64%)
Query: 2 SVLNNVDEQTVRSLNGCRVADQILKHVPNVEHFRMTLRCLKFWAKRRGVYSNVTGFLGGV 61
++L V+E+ V SLNG RV DQIL+ VPN F+ LR +KFWA+RR +Y+NV GF GGV
Sbjct: 174 NLLKGVEERCVLSLNGTRVTDQILQLVPNRAVFKHALRAIKFWAQRRAIYANVVGFPGGV 233
Query: 62 NWALLVARVCQLYPNAIPSMLVSRFFRVYTQWRWPNPVMLCPIEEDELGFSVWDPRKNPR 121
WA++VAR+CQLYPNA+ S++V++FFR+ QW WP P++L PIE+ L +W+P+ P
Sbjct: 234 AWAMMVARICQLYPNAVSSVIVAKFFRILHQWNWPQPILLKPIEDGPLQVRIWNPKLYPS 293
Query: 122 DRSHHMPIITPAYPCMNSSYNVSLSTLRVMTEQFQWGNRICEEIELNKAQWSALFEPYLF 181
D++H MPIITPAYP M +++N++LST ++ + I ++I + WSALF+ + F
Sbjct: 294 DKAHRMPIITPAYPSMCATHNITLSTQTIILREMVRAGEIADQIMVKALPWSALFQKHDF 353
Query: 182 FEAYKNYLQVDIVXXXXXXLLTWKGWVESRFRQLTLKIERDTNGLLQCHPYPNEYIDPSK 241
F YK+YL + L W G VES+ R L ++E + + HP+ N+ D
Sbjct: 354 FHRYKHYLTITAAAKTAEAQLKWAGLVESKLRHLVTRLEL-VDAIALAHPF-NKGFDKVY 411
Query: 242 PC 243
C
Sbjct: 412 NC 413
Score = 54 (24.1 bits), Expect = 4.2e-61, Sum P(2) = 4.2e-61
Identities = 17/77 (22%), Positives = 34/77 (44%)
Query: 242 PCPNSAFFMGLRRKEGVTGKERQQFDIRGTVDNFREEIGMYMFWKPG-MDIYVSHVRRRQ 300
P + ++GL E G ++ DI F E + + M++++ + +
Sbjct: 469 PVYTTTCYIGLEL-EKKKGHPIKRLDISWPTQEFYELCKKWDKYDDTLMNVFIKNTKNTA 527
Query: 301 LPSFVFPDGYKRPRPSR 317
LP VF G +RP+ ++
Sbjct: 528 LPDEVFEPGEERPKATK 544
>GENEDB_PFALCIPARUM|PFF1240w [details] [associations]
symbol:PFF1240w "poly(A) polymerase PAP,
putative" species:5833 "Plasmodium falciparum" [GO:0006378 "mRNA
polyadenylation" evidence=ISS] InterPro:IPR002934
InterPro:IPR007010 InterPro:IPR007012 InterPro:IPR011068
InterPro:IPR014492 Pfam:PF01909 Pfam:PF04926 Pfam:PF04928
PIRSF:PIRSF018425 GO:GO:0005634 GO:GO:0006378 GO:GO:0006351
GO:GO:0003723 EMBL:AL844505 GO:GO:0004652 KO:K14376
Gene3D:3.30.70.590 SUPFAM:SSF55003 HOGENOM:HOG000204376
ProtClustDB:PTZ00418 RefSeq:XP_966239.1 ProteinModelPortal:C6KT92
EnsemblProtists:PFF1240w:mRNA GeneID:3885690 KEGG:pfa:PFF1240w
EuPathDB:PlasmoDB:PF3D7_0625600 OMA:MEDENNI Uniprot:C6KT92
Length = 631
Score = 493 (178.6 bits), Expect = 8.8e-59, Sum P(2) = 8.8e-59
Identities = 90/168 (53%), Positives = 122/168 (72%)
Query: 3 VLNNVDEQTVRSLNGCRVADQILKHVPNVEHFRMTLRCLKFWAKRRGVYSNVTGFLGGVN 62
+L N+DE TVRSLNG RVAD IL VPN ++FR TLR +K WAK RG+YSN+ GFLGG++
Sbjct: 252 ILKNLDEVTVRSLNGIRVADLILNSVPNKDYFRNTLRFIKLWAKSRGIYSNILGFLGGIS 311
Query: 63 WALLVARVCQLYPNAIPSMLVSRFFRVYTQWRWPNPVMLCPIEEDEL----GFSVWDPRK 118
WALL A++CQLYPN S L+ +FF+VY+ W W PV+L I++ + F VWDP K
Sbjct: 312 WALLTAKICQLYPNFNVSQLICKFFKVYSIWNWKYPVLLQNIKKYNIEGLNNFPVWDPEK 371
Query: 119 NPRDRSHHMPIITPAYPCMNSSYNVSLSTLRVMTEQFQWGNRICEEIE 166
N +D+ H MPIITPA+PCMNS++NV+ T ++ E+F+ + I + +E
Sbjct: 372 NIKDKLHIMPIITPAFPCMNSTHNVTYCTRNILIEEFKRAHSIIQYME 419
Score = 128 (50.1 bits), Expect = 8.8e-59, Sum P(2) = 8.8e-59
Identities = 31/98 (31%), Positives = 45/98 (45%)
Query: 157 WGNRICEEIELNKAQ-WSALFEPYLFFEAYKNYLQVDIVXXXXXXLLTWKGWVESRFRQL 215
W N I + W + EP F YK++L + I+ +WKGW+ES+ R L
Sbjct: 434 WPNNNVNNINNSSNNVWMTILEPLDLFSTYKHFLHIQIMGINEFIYNSWKGWIESKIRLL 493
Query: 216 TLKIERDTNGLLQCHPYPNEYI-DPSKPCPNSAFFMGL 252
K+E T L+ P+P Y K S+FF+ L
Sbjct: 494 FKKLE--TINELKIRPFPKFYFYKKEKSYYCSSFFIAL 529
>UNIPROTKB|C6KT92 [details] [associations]
symbol:PFF1240w "Poly(A) polymerase PAP, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0004652
"polynucleotide adenylyltransferase activity" evidence=IBA]
[GO:0005634 "nucleus" evidence=IBA] [GO:0006378 "mRNA
polyadenylation" evidence=ISS;IBA] InterPro:IPR002934
InterPro:IPR007010 InterPro:IPR007012 InterPro:IPR011068
InterPro:IPR014492 Pfam:PF01909 Pfam:PF04926 Pfam:PF04928
PIRSF:PIRSF018425 GO:GO:0005634 GO:GO:0006378 GO:GO:0006351
GO:GO:0003723 EMBL:AL844505 GO:GO:0004652 KO:K14376
Gene3D:3.30.70.590 SUPFAM:SSF55003 HOGENOM:HOG000204376
ProtClustDB:PTZ00418 RefSeq:XP_966239.1 ProteinModelPortal:C6KT92
EnsemblProtists:PFF1240w:mRNA GeneID:3885690 KEGG:pfa:PFF1240w
EuPathDB:PlasmoDB:PF3D7_0625600 OMA:MEDENNI Uniprot:C6KT92
Length = 631
Score = 493 (178.6 bits), Expect = 8.8e-59, Sum P(2) = 8.8e-59
Identities = 90/168 (53%), Positives = 122/168 (72%)
Query: 3 VLNNVDEQTVRSLNGCRVADQILKHVPNVEHFRMTLRCLKFWAKRRGVYSNVTGFLGGVN 62
+L N+DE TVRSLNG RVAD IL VPN ++FR TLR +K WAK RG+YSN+ GFLGG++
Sbjct: 252 ILKNLDEVTVRSLNGIRVADLILNSVPNKDYFRNTLRFIKLWAKSRGIYSNILGFLGGIS 311
Query: 63 WALLVARVCQLYPNAIPSMLVSRFFRVYTQWRWPNPVMLCPIEEDEL----GFSVWDPRK 118
WALL A++CQLYPN S L+ +FF+VY+ W W PV+L I++ + F VWDP K
Sbjct: 312 WALLTAKICQLYPNFNVSQLICKFFKVYSIWNWKYPVLLQNIKKYNIEGLNNFPVWDPEK 371
Query: 119 NPRDRSHHMPIITPAYPCMNSSYNVSLSTLRVMTEQFQWGNRICEEIE 166
N +D+ H MPIITPA+PCMNS++NV+ T ++ E+F+ + I + +E
Sbjct: 372 NIKDKLHIMPIITPAFPCMNSTHNVTYCTRNILIEEFKRAHSIIQYME 419
Score = 128 (50.1 bits), Expect = 8.8e-59, Sum P(2) = 8.8e-59
Identities = 31/98 (31%), Positives = 45/98 (45%)
Query: 157 WGNRICEEIELNKAQ-WSALFEPYLFFEAYKNYLQVDIVXXXXXXLLTWKGWVESRFRQL 215
W N I + W + EP F YK++L + I+ +WKGW+ES+ R L
Sbjct: 434 WPNNNVNNINNSSNNVWMTILEPLDLFSTYKHFLHIQIMGINEFIYNSWKGWIESKIRLL 493
Query: 216 TLKIERDTNGLLQCHPYPNEYI-DPSKPCPNSAFFMGL 252
K+E T L+ P+P Y K S+FF+ L
Sbjct: 494 FKKLE--TINELKIRPFPKFYFYKKEKSYYCSSFFIAL 529
>WB|WBGene00009658 [details] [associations]
symbol:F43G6.5 species:6239 "Caenorhabditis elegans"
[GO:0016779 "nucleotidyltransferase activity" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004652 "polynucleotide
adenylyltransferase activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0043631 "RNA polyadenylation" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
InterPro:IPR002934 InterPro:IPR007010 InterPro:IPR007012
InterPro:IPR011068 InterPro:IPR014492 Pfam:PF01909 Pfam:PF04926
Pfam:PF04928 PIRSF:PIRSF018425 GO:GO:0005634 GO:GO:0006351
GO:GO:0003723 GO:GO:0004652 GO:GO:0043631 KO:K14376
Gene3D:3.30.70.590 SUPFAM:SSF55003 GeneTree:ENSGT00390000017928
OMA:FPGGVAW HSSP:P25500 EMBL:Z50070 EMBL:AL032651 PIR:C88325
PIR:T22140 RefSeq:NP_496524.1 ProteinModelPortal:G5EBX5 SMR:G5EBX5
EnsemblMetazoa:F43G6.5 GeneID:174816 KEGG:cel:CELE_F43G6.5
CTD:174816 WormBase:F43G6.5 NextBio:885628 Uniprot:G5EBX5
Length = 554
Score = 595 (214.5 bits), Expect = 6.6e-58, P = 6.6e-58
Identities = 117/274 (42%), Positives = 170/274 (62%)
Query: 2 SVLNNVDEQTVRSLNGCRVADQILKHVPNVEHFRMTLRCLKFWAKRRGVYSNVTGFLGGV 61
++L N+D+++VRSLNGCRVA+ +LK VPN E+F +TLR +K WAK G+YSN GF GG+
Sbjct: 186 ALLKNLDQESVRSLNGCRVAENLLKLVPNQENFCITLRAIKLWAKNHGIYSNSMGFFGGI 245
Query: 62 NWALLVARVCQLYPNAIPSMLVSRFFRVYTQWRWPNPVMLCPIEEDELGFS-----VWDP 116
WA+LVAR CQLYPNA PS L+ + F +++ W+WP PV+L I D + + VWDP
Sbjct: 246 TWAILVARACQLYPNASPSKLIQKVFFIFSTWKWPAPVLLDFISSDRMDLAQLNQLVWDP 305
Query: 117 RKNPRDRSHHMPIITPAYPCMNSSYNVSLSTLRVMTEQFQWGNRICEEIELNKAQWSALF 176
R+N DR H MPI+TPA+P NS++NVS S+++V+ E+ + C+ I+ W L
Sbjct: 306 RRNQSDRYHLMPIVTPAFPQQNSTHNVSRSSMKVIQEEMKDALITCDNIQNGSCNWMDLL 365
Query: 177 EPYLFFEAYKNYLQVDIVXXXXXXLLTWKGWVESRFRQLTLKIERDTNGLLQCHPYPNEY 236
E FF YK+++ + + L + G+ ESR RQL L +E++ G+ H P ++
Sbjct: 366 EEINFFSRYKHFISLSMTAETEKDELAFGGFFESRIRQLVLILEKN-QGIKLAHINPKKF 424
Query: 237 IDPSKPCPNSAFFMGLRRKEGVTG----KERQQF 266
P S +F+GL+ E V K+ QQF
Sbjct: 425 KAAKDP-KKSVWFIGLQFDENVKNLDLTKDIQQF 457
>SGD|S000001710 [details] [associations]
symbol:PAP1 "Poly(A) polymerase, one of three factors
required for mRNA 3'-end pol" species:4932 "Saccharomyces
cerevisiae" [GO:0005634 "nucleus" evidence=IEA] [GO:0031123 "RNA
3'-end processing" evidence=IEA] [GO:0005847 "mRNA cleavage and
polyadenylation specificity factor complex" evidence=IDA]
[GO:0004652 "polynucleotide adenylyltransferase activity"
evidence=IEA;IDA] [GO:0006378 "mRNA polyadenylation"
evidence=IDA;IMP] [GO:0005654 "nucleoplasm" evidence=IPI]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0016740
"transferase activity" evidence=IEA] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0071050 "snoRNA polyadenylation"
evidence=IGI] [GO:0016779 "nucleotidyltransferase activity"
evidence=IEA] [GO:0043631 "RNA polyadenylation" evidence=IEA]
InterPro:IPR002934 InterPro:IPR007010 InterPro:IPR007012
InterPro:IPR011068 InterPro:IPR014492 Pfam:PF01909 Pfam:PF04926
Pfam:PF04928 PIRSF:PIRSF018425 SGD:S000001710 GO:GO:0005524
GO:GO:0000287 GO:GO:0006378 GO:GO:0006351 EMBL:BK006944
GO:GO:0003723 GO:GO:0005847 GO:GO:0004652 EMBL:X65124
RefSeq:NP_012929.4 GeneID:853873 KEGG:sce:YKR004C PDB:3C66
PDBsum:3C66 RefSeq:NP_012927.3 GeneID:853871 KEGG:sce:YKR002W
KO:K14376 GO:GO:0071050 eggNOG:COG5186 Gene3D:3.30.70.590
SUPFAM:SSF55003 GeneTree:ENSGT00390000017928 HOGENOM:HOG000204376
OMA:FPGGVAW OrthoDB:EOG4SR150 EMBL:X60307 EMBL:Z28227 PIR:S19031
PDB:1FA0 PDB:2HHP PDB:2O1P PDB:2Q66 PDBsum:1FA0 PDBsum:2HHP
PDBsum:2O1P PDBsum:2Q66 ProteinModelPortal:P29468 SMR:P29468
DIP:DIP-2297N IntAct:P29468 MINT:MINT-375429 STRING:P29468
PaxDb:P29468 PeptideAtlas:P29468 EnsemblFungi:YKR002W CYGD:YKR002w
EvolutionaryTrace:P29468 NextBio:975142 Genevestigator:P29468
GermOnline:YKR002W Uniprot:P29468
Length = 568
Score = 580 (209.2 bits), Expect = 2.5e-56, P = 2.5e-56
Identities = 137/389 (35%), Positives = 212/389 (54%)
Query: 2 SVLNNVDEQTVRSLNGCRVADQILKHVPNVEHFRMTLRCLKFWAKRRGVYSNVTGFLGGV 61
++L N+DE+ +R+LNG RV D+IL+ VP FR+ LR +K WA+RR VY+N+ GF GGV
Sbjct: 175 NLLRNLDEKDLRALNGTRVTDEILELVPKPNVFRIALRAIKLWAQRRAVYANIFGFPGGV 234
Query: 62 NWALLVARVCQLYPNAIPSMLVSRFFRVYTQWRWPNPVMLCPIEEDELGFSVWDPRKNPR 121
WA+LVAR+CQLYPNA +++++RFF + ++W WP PV+L PIE+ L VW+P+ +
Sbjct: 235 AWAMLVARICQLYPNACSAVILNRFFIILSEWNWPQPVILKPIEDGPLQVRVWNPKIYAQ 294
Query: 122 DRSHHMPIITPAYPCMNSSYNVSLSTLRVMTEQFQWGNRICEEIELNKAQWSALFEPYLF 181
DRSH MP+ITPAYP M +++N++ ST +V+ ++F G +I +I NK W+ LFE F
Sbjct: 295 DRSHRMPVITPAYPSMCATHNITESTKKVILQEFVRGVQITNDIFSNKKSWANLFEKNDF 354
Query: 182 FEAYKNYLQVDIVXXXXXXL-LTWKGWVESRFRQLTLKIERDTNGLLQCHPYPNEYIDPS 240
F YK YL++ L W G VES+ R L +K+E G+ HP+ + + S
Sbjct: 355 FFRYKFYLEITAYTRGSDEQHLKWSGLVESKVRLLVMKLEV-LAGIKIAHPFTKPF-ESS 412
Query: 241 KPCPNSAFFMGLRRKEGVTGKERQQFDIRGTVDNFREEIGMYMFWKPGMD-IYVS---HV 296
CP + ++ K G E ++ D +EE + K + +Y+ ++
Sbjct: 413 YCCPTEDDYEMIQDKYGSHKTETALNALKLVTDENKEEESIKDAPKAYLSTMYIGLDFNI 472
Query: 297 RRRQLPSFVFPDGYKRPRPSRHFNEQAGKPCEDVKMCQSGSSGRHLKREKEHEMEEVRPD 356
++ + + R FNE G + + G L E E E+ RP
Sbjct: 473 ENKKEKVDIHIPCTEFVNLCRSFNEDYGDH-KVFNLALRFVKGYDLPDEVFDENEK-RPS 530
Query: 357 KSVKRASISS--EVPQPVSPGKTTGDSTN 383
K KR ++ + E + +GD+ N
Sbjct: 531 KKSKRKNLDARHETVKRSKSDAASGDNIN 559
>WB|WBGene00012528 [details] [associations]
symbol:pap-1 species:6239 "Caenorhabditis elegans"
[GO:0016779 "nucleotidyltransferase activity" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004652 "polynucleotide
adenylyltransferase activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0043631 "RNA polyadenylation" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0000003 "reproduction" evidence=IMP] [GO:0040010 "positive
regulation of growth rate" evidence=IMP] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP] [GO:0010171
"body morphogenesis" evidence=IMP] [GO:0040007 "growth"
evidence=IMP] [GO:0040011 "locomotion" evidence=IMP] [GO:0002009
"morphogenesis of an epithelium" evidence=IMP] [GO:0040035
"hermaphrodite genitalia development" evidence=IMP] [GO:0040027
"negative regulation of vulval development" evidence=IMP]
[GO:0007276 "gamete generation" evidence=IMP] [GO:0048477
"oogenesis" evidence=IMP] [GO:0006915 "apoptotic process"
evidence=IMP] InterPro:IPR002934 InterPro:IPR007010
InterPro:IPR007012 InterPro:IPR011068 InterPro:IPR014492
Pfam:PF01909 Pfam:PF04926 Pfam:PF04928 PIRSF:PIRSF018425
GO:GO:0005634 GO:GO:0009792 GO:GO:0002009 GO:GO:0040007
GO:GO:0040010 GO:GO:0006915 GO:GO:0002119 GO:GO:0006378
GO:GO:0010171 GO:GO:0040011 GO:GO:0048477 GO:GO:0006351
GO:GO:0003723 GO:GO:0040035 GO:GO:0040027 GO:GO:0004652 KO:K14376
eggNOG:COG5186 Gene3D:3.30.70.590 SUPFAM:SSF55003
GeneTree:ENSGT00390000017928 HOGENOM:HOG000204376 HSSP:P25500
EMBL:AL021474 PIR:G89189 RefSeq:NP_505683.1
ProteinModelPortal:Q9U2P3 SMR:Q9U2P3 STRING:Q9U2P3 PaxDb:Q9U2P3
EnsemblMetazoa:Y32F6A.3.1 EnsemblMetazoa:Y32F6A.3.2 GeneID:179458
KEGG:cel:CELE_Y32F6A.3 UCSC:Y32F6A.3 CTD:179458 WormBase:Y32F6A.3
InParanoid:Q9U2P3 OMA:CEALEIC NextBio:905480 Uniprot:Q9U2P3
Length = 655
Score = 578 (208.5 bits), Expect = 4.2e-56, P = 4.2e-56
Identities = 114/252 (45%), Positives = 161/252 (63%)
Query: 2 SVLNNVDEQTVRSLNGCRVADQILKHVPNVEHFRMTLRCLKFWAKRRGVYSNVTGFLGGV 61
++L N+D+++VRSLNGCRVA+Q+LK VP + F +TLR +K WAK G+YSN GF GG+
Sbjct: 179 NLLRNLDQESVRSLNGCRVAEQLLKLVPRQKEFCVTLRAIKLWAKNHGIYSNSMGFFGGI 238
Query: 62 NWALLVARVCQLYPNAIPSMLVSRFFRVYTQWRWPNPVMLCPIEEDE-----LGFSVWDP 116
WA+LVAR CQLYPNA PS LV R F +++ W WP+PV+L + D L VWDP
Sbjct: 239 TWAILVARACQLYPNASPSRLVHRMFFIFSTWTWPHPVVLNEMNNDRNDIPTLCELVWDP 298
Query: 117 RKNPRDRSHHMPIITPAYPCMNSSYNVSLSTLRVMTEQFQWGNRICEEIELNKAQWSALF 176
R+ DR H MPIITPA+P NS++NV+ ST V+ + IC +I K++W+ALF
Sbjct: 299 RRKNTDRFHVMPIITPAFPEQNSTHNVTRSTATVIKNEICEALEICRDISEGKSKWTALF 358
Query: 177 EPYLFFEAYKNYLQVDIVXXXXXXLLTWKGWVESRFRQLTLKIERDTNGLLQCHPYPNEY 236
E FF YK+++ + + L + G++ESR R L +ER+ + ++ H PN++
Sbjct: 359 EEVNFFSRYKHFIALIMAAPNEEEELNYGGFLESRIRLLVQSLERNQD-IIIAHNDPNKH 417
Query: 237 IDPSKPCPNSAF 248
KP PN+ F
Sbjct: 418 ----KPSPNAKF 425
>UNIPROTKB|Q9U2P3 [details] [associations]
symbol:pap-1 "Protein PAP-1" species:6239 "Caenorhabditis
elegans" [GO:0006378 "mRNA polyadenylation" evidence=IBA]
[GO:0005634 "nucleus" evidence=IBA] [GO:0004652 "polynucleotide
adenylyltransferase activity" evidence=IBA] InterPro:IPR002934
InterPro:IPR007010 InterPro:IPR007012 InterPro:IPR011068
InterPro:IPR014492 Pfam:PF01909 Pfam:PF04926 Pfam:PF04928
PIRSF:PIRSF018425 GO:GO:0005634 GO:GO:0009792 GO:GO:0002009
GO:GO:0040007 GO:GO:0040010 GO:GO:0006915 GO:GO:0002119
GO:GO:0006378 GO:GO:0010171 GO:GO:0040011 GO:GO:0048477
GO:GO:0006351 GO:GO:0003723 GO:GO:0040035 GO:GO:0040027
GO:GO:0004652 KO:K14376 eggNOG:COG5186 Gene3D:3.30.70.590
SUPFAM:SSF55003 GeneTree:ENSGT00390000017928 HOGENOM:HOG000204376
HSSP:P25500 EMBL:AL021474 PIR:G89189 RefSeq:NP_505683.1
ProteinModelPortal:Q9U2P3 SMR:Q9U2P3 STRING:Q9U2P3 PaxDb:Q9U2P3
EnsemblMetazoa:Y32F6A.3.1 EnsemblMetazoa:Y32F6A.3.2 GeneID:179458
KEGG:cel:CELE_Y32F6A.3 UCSC:Y32F6A.3 CTD:179458 WormBase:Y32F6A.3
InParanoid:Q9U2P3 OMA:CEALEIC NextBio:905480 Uniprot:Q9U2P3
Length = 655
Score = 578 (208.5 bits), Expect = 4.2e-56, P = 4.2e-56
Identities = 114/252 (45%), Positives = 161/252 (63%)
Query: 2 SVLNNVDEQTVRSLNGCRVADQILKHVPNVEHFRMTLRCLKFWAKRRGVYSNVTGFLGGV 61
++L N+D+++VRSLNGCRVA+Q+LK VP + F +TLR +K WAK G+YSN GF GG+
Sbjct: 179 NLLRNLDQESVRSLNGCRVAEQLLKLVPRQKEFCVTLRAIKLWAKNHGIYSNSMGFFGGI 238
Query: 62 NWALLVARVCQLYPNAIPSMLVSRFFRVYTQWRWPNPVMLCPIEEDE-----LGFSVWDP 116
WA+LVAR CQLYPNA PS LV R F +++ W WP+PV+L + D L VWDP
Sbjct: 239 TWAILVARACQLYPNASPSRLVHRMFFIFSTWTWPHPVVLNEMNNDRNDIPTLCELVWDP 298
Query: 117 RKNPRDRSHHMPIITPAYPCMNSSYNVSLSTLRVMTEQFQWGNRICEEIELNKAQWSALF 176
R+ DR H MPIITPA+P NS++NV+ ST V+ + IC +I K++W+ALF
Sbjct: 299 RRKNTDRFHVMPIITPAFPEQNSTHNVTRSTATVIKNEICEALEICRDISEGKSKWTALF 358
Query: 177 EPYLFFEAYKNYLQVDIVXXXXXXLLTWKGWVESRFRQLTLKIERDTNGLLQCHPYPNEY 236
E FF YK+++ + + L + G++ESR R L +ER+ + ++ H PN++
Sbjct: 359 EEVNFFSRYKHFIALIMAAPNEEEELNYGGFLESRIRLLVQSLERNQD-IIIAHNDPNKH 417
Query: 237 IDPSKPCPNSAF 248
KP PN+ F
Sbjct: 418 ----KPSPNAKF 425
>CGD|CAL0002451 [details] [associations]
symbol:PAP1 species:5476 "Candida albicans" [GO:0004652
"polynucleotide adenylyltransferase activity" evidence=ISS;IDA]
[GO:0044011 "single-species biofilm formation on inanimate
substrate" evidence=IMP] [GO:0003723 "RNA binding" evidence=IDA]
[GO:0006378 "mRNA polyadenylation" evidence=IDA] [GO:0005847 "mRNA
cleavage and polyadenylation specificity factor complex"
evidence=IEA] [GO:0071050 "snoRNA polyadenylation" evidence=IEA]
InterPro:IPR002934 InterPro:IPR007010 InterPro:IPR007012
InterPro:IPR011068 InterPro:IPR014492 Pfam:PF01909 Pfam:PF04926
Pfam:PF04928 PIRSF:PIRSF018425 CGD:CAL0002451 GO:GO:0005524
GO:GO:0005634 GO:GO:0046872 GO:GO:0006378 GO:GO:0006351
GO:GO:0003723 EMBL:AACQ01000100 GO:GO:0044011 GO:GO:0004652
KO:K14376 EMBL:AF167162 EMBL:AB021667 RefSeq:XP_714613.1
ProteinModelPortal:Q9UW26 STRING:Q9UW26 GeneID:3643763
KEGG:cal:CaO19.3197 eggNOG:COG5186 Gene3D:3.30.70.590
SUPFAM:SSF55003 Uniprot:Q9UW26
Length = 555
Score = 566 (204.3 bits), Expect = 7.8e-55, P = 7.8e-55
Identities = 109/246 (44%), Positives = 154/246 (62%)
Query: 2 SVLNNVDEQTVRSLNGCRVADQILKHVPNVEHFRMTLRCLKFWAKRRGVYSNVTGFLGGV 61
++L N+DE+ +R+LNG RV D+IL+ VP F+ LRC+K WA++R VY N+ GF GGV
Sbjct: 174 NLLKNIDEKDLRALNGTRVTDEILQLVPKPTVFKHALRCIKMWAQQRAVYGNIFGFPGGV 233
Query: 62 NWALLVARVCQLYPNAIPSMLVSRFFRVYTQWRWPNPVMLCPIEEDELGFSVWDPRKNPR 121
WA+LVAR+CQLYPNA+ +++V +FF +Y+QW WP PV+L IE+ L VW+PR
Sbjct: 234 AWAMLVARICQLYPNAVSAVIVEKFFHIYSQWAWPQPVLLKQIEDGPLQVRVWNPRLYAL 293
Query: 122 DRSHHMPIITPAYPCMNSSYNVSLSTLRVMTEQFQWGNRICEEIELNKAQWSALFEPYLF 181
DR H MP+ITPAYP M +++N++ ST +V+ +FQ G + +I + K WS L E + F
Sbjct: 294 DRQHRMPVITPAYPSMCATHNITSSTQKVILSEFQRGIELMNDINVGKKSWSDLLERHDF 353
Query: 182 FEAYKNYLQ-VDIVXXXXXXLLTWKGWVESRFRQLTLKIERDTNGLLQCHPYPNEYIDPS 240
F YK YL V L + G VES+ R L K+E G+ HPY + +
Sbjct: 354 FFRYKFYLCIVAATRSTYAEHLKYSGMVESKLRLLVQKLEL-VEGIELAHPYVKSF-ENG 411
Query: 241 KPCPNS 246
C N+
Sbjct: 412 YYCDNA 417
>UNIPROTKB|Q9UW26 [details] [associations]
symbol:PAPA "Poly(A) polymerase PAPa" species:237561
"Candida albicans SC5314" [GO:0003723 "RNA binding" evidence=IDA]
[GO:0004652 "polynucleotide adenylyltransferase activity"
evidence=ISS;IDA] [GO:0006378 "mRNA polyadenylation" evidence=IDA]
[GO:0044011 "single-species biofilm formation on inanimate
substrate" evidence=IMP] InterPro:IPR002934 InterPro:IPR007010
InterPro:IPR007012 InterPro:IPR011068 InterPro:IPR014492
Pfam:PF01909 Pfam:PF04926 Pfam:PF04928 PIRSF:PIRSF018425
CGD:CAL0002451 GO:GO:0005524 GO:GO:0005634 GO:GO:0046872
GO:GO:0006378 GO:GO:0006351 GO:GO:0003723 EMBL:AACQ01000100
GO:GO:0044011 GO:GO:0004652 KO:K14376 EMBL:AF167162 EMBL:AB021667
RefSeq:XP_714613.1 ProteinModelPortal:Q9UW26 STRING:Q9UW26
GeneID:3643763 KEGG:cal:CaO19.3197 eggNOG:COG5186
Gene3D:3.30.70.590 SUPFAM:SSF55003 Uniprot:Q9UW26
Length = 555
Score = 566 (204.3 bits), Expect = 7.8e-55, P = 7.8e-55
Identities = 109/246 (44%), Positives = 154/246 (62%)
Query: 2 SVLNNVDEQTVRSLNGCRVADQILKHVPNVEHFRMTLRCLKFWAKRRGVYSNVTGFLGGV 61
++L N+DE+ +R+LNG RV D+IL+ VP F+ LRC+K WA++R VY N+ GF GGV
Sbjct: 174 NLLKNIDEKDLRALNGTRVTDEILQLVPKPTVFKHALRCIKMWAQQRAVYGNIFGFPGGV 233
Query: 62 NWALLVARVCQLYPNAIPSMLVSRFFRVYTQWRWPNPVMLCPIEEDELGFSVWDPRKNPR 121
WA+LVAR+CQLYPNA+ +++V +FF +Y+QW WP PV+L IE+ L VW+PR
Sbjct: 234 AWAMLVARICQLYPNAVSAVIVEKFFHIYSQWAWPQPVLLKQIEDGPLQVRVWNPRLYAL 293
Query: 122 DRSHHMPIITPAYPCMNSSYNVSLSTLRVMTEQFQWGNRICEEIELNKAQWSALFEPYLF 181
DR H MP+ITPAYP M +++N++ ST +V+ +FQ G + +I + K WS L E + F
Sbjct: 294 DRQHRMPVITPAYPSMCATHNITSSTQKVILSEFQRGIELMNDINVGKKSWSDLLERHDF 353
Query: 182 FEAYKNYLQ-VDIVXXXXXXLLTWKGWVESRFRQLTLKIERDTNGLLQCHPYPNEYIDPS 240
F YK YL V L + G VES+ R L K+E G+ HPY + +
Sbjct: 354 FFRYKFYLCIVAATRSTYAEHLKYSGMVESKLRLLVQKLEL-VEGIELAHPYVKSF-ENG 411
Query: 241 KPCPNS 246
C N+
Sbjct: 412 YYCDNA 417
>WB|WBGene00011791 [details] [associations]
symbol:T15H9.6 species:6239 "Caenorhabditis elegans"
[GO:0016779 "nucleotidyltransferase activity" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004652 "polynucleotide
adenylyltransferase activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0043631 "RNA polyadenylation" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
InterPro:IPR002934 InterPro:IPR007010 InterPro:IPR007012
InterPro:IPR011068 InterPro:IPR014492 Pfam:PF01909 Pfam:PF04926
Pfam:PF04928 PIRSF:PIRSF018425 GO:GO:0005634 GO:GO:0006378
GO:GO:0006351 GO:GO:0003723 GO:GO:0004652 EMBL:Z47356 KO:K14376
eggNOG:COG5186 Gene3D:3.30.70.590 SUPFAM:SSF55003
GeneTree:ENSGT00390000017928 HOGENOM:HOG000204376 HSSP:P25500
PIR:T24943 RefSeq:NP_496067.1 ProteinModelPortal:Q09995 SMR:Q09995
STRING:Q09995 EnsemblMetazoa:T15H9.6 GeneID:174513
KEGG:cel:CELE_T15H9.6 UCSC:T15H9.6 CTD:174513 WormBase:T15H9.6
InParanoid:Q09995 OMA:PFGSYRL NextBio:884348 Uniprot:Q09995
Length = 554
Score = 566 (204.3 bits), Expect = 7.8e-55, P = 7.8e-55
Identities = 113/257 (43%), Positives = 164/257 (63%)
Query: 2 SVLNNVDEQTVRSLNGCRVADQILKHVPNVEHFRMTLRCLKFWAKRRGVYSNVTGFLGGV 61
S+L N+DE++VRSLNGCRVA+Q+LK VP+ ++F +TLR +K WAK G+YSN GF GG+
Sbjct: 181 SLLKNLDEESVRSLNGCRVAEQLLKLVPHQKNFCITLRAIKLWAKNHGIYSNSMGFFGGI 240
Query: 62 NWALLVARVCQLYPNAIPSMLVSRFFRVYTQWRWPNPVMLCPIEED-----ELGFSVWDP 116
WA+LVAR+CQLYPNA PS L+ + F +++ W WP PV+L I D +L VWDP
Sbjct: 241 TWAILVARICQLYPNAAPSRLIQKVFFIFSTWNWPAPVLLDYINCDRTDLAQLNQLVWDP 300
Query: 117 RKNPRDRSHHMPIITPAYPCMNSSYNVSLSTLRVMTEQFQWGNRICEEIELNKAQWSALF 176
R+N DR H MPIITPA+P NS++NVS S+++V+ ++ + IC++I +W L
Sbjct: 301 RRNHADRYHLMPIITPAFPQQNSTHNVSRSSMKVIQDEMKKALIICDKIHEGTLEWRDLL 360
Query: 177 EPYLFFEAYKNYLQVDIVXXXXXXLLTWKGWVESRFRQLTLKIERDTNGLLQCHPY-PNE 235
E FF Y +++ + + L + G+ ESR RQL +E+ N ++Q P +
Sbjct: 361 EEINFFSKYHHFIALKLKAESVKEELAFGGFFESRIRQLVQILEK--NQVIQVAQINPRK 418
Query: 236 YIDPSKPCPNSAFFMGL 252
+ D P S +F+GL
Sbjct: 419 FKDVKDP-KKSIWFIGL 434
>UNIPROTKB|Q09995 [details] [associations]
symbol:T15H9.6 "Protein T15H9.6" species:6239
"Caenorhabditis elegans" [GO:0006378 "mRNA polyadenylation"
evidence=IBA] [GO:0005634 "nucleus" evidence=IBA] [GO:0004652
"polynucleotide adenylyltransferase activity" evidence=IBA]
InterPro:IPR002934 InterPro:IPR007010 InterPro:IPR007012
InterPro:IPR011068 InterPro:IPR014492 Pfam:PF01909 Pfam:PF04926
Pfam:PF04928 PIRSF:PIRSF018425 GO:GO:0005634 GO:GO:0006378
GO:GO:0006351 GO:GO:0003723 GO:GO:0004652 EMBL:Z47356 KO:K14376
eggNOG:COG5186 Gene3D:3.30.70.590 SUPFAM:SSF55003
GeneTree:ENSGT00390000017928 HOGENOM:HOG000204376 HSSP:P25500
PIR:T24943 RefSeq:NP_496067.1 ProteinModelPortal:Q09995 SMR:Q09995
STRING:Q09995 EnsemblMetazoa:T15H9.6 GeneID:174513
KEGG:cel:CELE_T15H9.6 UCSC:T15H9.6 CTD:174513 WormBase:T15H9.6
InParanoid:Q09995 OMA:PFGSYRL NextBio:884348 Uniprot:Q09995
Length = 554
Score = 566 (204.3 bits), Expect = 7.8e-55, P = 7.8e-55
Identities = 113/257 (43%), Positives = 164/257 (63%)
Query: 2 SVLNNVDEQTVRSLNGCRVADQILKHVPNVEHFRMTLRCLKFWAKRRGVYSNVTGFLGGV 61
S+L N+DE++VRSLNGCRVA+Q+LK VP+ ++F +TLR +K WAK G+YSN GF GG+
Sbjct: 181 SLLKNLDEESVRSLNGCRVAEQLLKLVPHQKNFCITLRAIKLWAKNHGIYSNSMGFFGGI 240
Query: 62 NWALLVARVCQLYPNAIPSMLVSRFFRVYTQWRWPNPVMLCPIEED-----ELGFSVWDP 116
WA+LVAR+CQLYPNA PS L+ + F +++ W WP PV+L I D +L VWDP
Sbjct: 241 TWAILVARICQLYPNAAPSRLIQKVFFIFSTWNWPAPVLLDYINCDRTDLAQLNQLVWDP 300
Query: 117 RKNPRDRSHHMPIITPAYPCMNSSYNVSLSTLRVMTEQFQWGNRICEEIELNKAQWSALF 176
R+N DR H MPIITPA+P NS++NVS S+++V+ ++ + IC++I +W L
Sbjct: 301 RRNHADRYHLMPIITPAFPQQNSTHNVSRSSMKVIQDEMKKALIICDKIHEGTLEWRDLL 360
Query: 177 EPYLFFEAYKNYLQVDIVXXXXXXLLTWKGWVESRFRQLTLKIERDTNGLLQCHPY-PNE 235
E FF Y +++ + + L + G+ ESR RQL +E+ N ++Q P +
Sbjct: 361 EEINFFSKYHHFIALKLKAESVKEELAFGGFFESRIRQLVQILEK--NQVIQVAQINPRK 418
Query: 236 YIDPSKPCPNSAFFMGL 252
+ D P S +F+GL
Sbjct: 419 FKDVKDP-KKSIWFIGL 434
>UNIPROTKB|G3V2A0 [details] [associations]
symbol:PAPOLA "Poly(A) polymerase alpha" species:9606 "Homo
sapiens" [GO:0003723 "RNA binding" evidence=IEA] [GO:0004652
"polynucleotide adenylyltransferase activity" evidence=IEA]
[GO:0043631 "RNA polyadenylation" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR007010 InterPro:IPR007012 InterPro:IPR011068
Pfam:PF04926 Pfam:PF04928 GO:GO:0005634 GO:GO:0006351 GO:GO:0003723
GO:GO:0004652 GO:GO:0043631 EMBL:AL163051 Gene3D:3.30.70.590
SUPFAM:SSF55003 HGNC:HGNC:14981 ChiTaRS:PAPOLA
ProteinModelPortal:G3V2A0 SMR:G3V2A0 Ensembl:ENST00000555626
ArrayExpress:G3V2A0 Bgee:G3V2A0 Uniprot:G3V2A0
Length = 475
Score = 480 (174.0 bits), Expect = 5.3e-49, Sum P(2) = 5.3e-49
Identities = 124/332 (37%), Positives = 171/332 (51%)
Query: 65 LLVARVCQLYPNAIPSMLVSRFFRVYTQWRWPNPVMLCPIEEDELGFSVWDPRKNPRDRS 124
+LVAR CQLYPNAI S LV +FF V+++W WPNPV+L EE L VWDPR NP DR
Sbjct: 1 MLVARTCQLYPNAIASTLVHKFFLVFSKWEWPNPVLLKQPEECNLNLPVWDPRVNPSDRY 60
Query: 125 HHMPIITPAYPCMNSSYNVSLSTLRVMTEQFQWGNRICEEIELNKAQWSALFEPYLFFEA 184
H MPIITPAYP NS+YNVS+ST VM E+F+ G I +EI L+KA+WS LFE FF+
Sbjct: 61 HLMPIITPAYPQQNSTYNVSVSTRMVMVEEFKQGLAITDEILLSKAEWSKLFEAPNFFQK 120
Query: 185 YKNYLQVDIVXXXXXXLLTWKGWVESRFRQLTLKIERDTNGLL-----QCHPYPNEYIDP 239
YK+Y+ + L W G VES+ R L +E++ L Q P P E +P
Sbjct: 121 YKHYIVLLASAPTEKQRLEWVGLVESKIRILVGSLEKNEFITLAHVNPQSFPAPKE--NP 178
Query: 240 SKPCPNSAFFMGLRRKEGVTGKERQ---QFDIRGTVDN-FREEIGMYMFWKPGMDIYVSH 295
K + + +GL K+ + +DI+ D +R+ I MF + M I H
Sbjct: 179 DKEEFRTMWVIGLVFKKTENSENLSVDLTYDIQSFTDTVYRQAINSKMF-EVDMKIAAMH 237
Query: 296 VRRRQLPSFVFPDGYKRPRPSRHFNEQAGKPCEDVKMCQSGSSGRHLKREKEHEMEEVRP 355
V+R+QL + P+ ++ E VK+ S L + ++ M P
Sbjct: 238 VKRKQLHQLL---------PNHVLQKKKKHSTEGVKLTALNDSSLDLSMDSDNSMSVPSP 288
Query: 356 DKSVKRASI----SSEVPQPVSPGKTTGDSTN 383
+ K + + SS+ +P T TN
Sbjct: 289 TSATKTSPLNSSGSSQGRNSPAPAVTAASVTN 320
Score = 48 (22.0 bits), Expect = 5.3e-49, Sum P(2) = 5.3e-49
Identities = 27/83 (32%), Positives = 36/83 (43%)
Query: 355 PDKSVKRASISSEVPQPVSPGKTTGDSTN-DSEVMSAGGHLVSEK----DTMAAHMQLDG 409
P VKR S + P KT D T+ D+ ++ GH +E DT + Q +
Sbjct: 395 PIVGVKRTSSPHKEESPKKT-KTEEDETSEDANCLALSGHDKTEAKEQLDTETSTTQSET 453
Query: 410 IVNHESVALNEQKCTLVDDLSVI 432
I S+ L QK T DLS I
Sbjct: 454 IQTAASL-LASQK-TSSTDLSDI 474
>RGD|1308673 [details] [associations]
symbol:Papola "poly (A) polymerase alpha" species:10116 "Rattus
norvegicus" [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IBA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0004652
"polynucleotide adenylyltransferase activity" evidence=ISO;IBA]
[GO:0005634 "nucleus" evidence=ISO;IBA] [GO:0005737 "cytoplasm"
evidence=IBA] [GO:0006369 "termination of RNA polymerase II
transcription" evidence=IBA] [GO:0006378 "mRNA polyadenylation"
evidence=IBA] [GO:0043631 "RNA polyadenylation" evidence=ISO]
[GO:0005730 "nucleolus" evidence=ISO] InterPro:IPR002934
InterPro:IPR007010 InterPro:IPR007012 InterPro:IPR011068
InterPro:IPR014492 Pfam:PF01909 Pfam:PF04926 Pfam:PF04928
PIRSF:PIRSF018425 RGD:1308673 GO:GO:0005634 GO:GO:0005737
GO:GO:0006378 GO:GO:0003723 GO:GO:0000398 GO:GO:0006369
GO:GO:0004652 Gene3D:3.30.70.590 SUPFAM:SSF55003 IPI:IPI00567428
Ensembl:ENSRNOT00000047832 UCSC:RGD:1308673 ArrayExpress:F1MAC5
Uniprot:F1MAC5
Length = 681
Score = 412 (150.1 bits), Expect = 6.0e-41, Sum P(2) = 6.0e-41
Identities = 72/116 (62%), Positives = 91/116 (78%)
Query: 2 SVLNNVDEQTVRSLNGCRVADQILKHVPNVEHFRMTLRCLKFWAKRRGVYSNVTGFLGGV 61
S+L N+D + +RSLNGCRV D+IL VPN+++FR+TLR +K WAKR +YSN+ GFLGGV
Sbjct: 188 SLLKNLDIRCIRSLNGCRVTDEILHLVPNIDNFRLTLRAIKLWAKRHNIYSNILGFLGGV 247
Query: 62 NWALLVARVCQLYPNAIPSMLVSRFFRVYTQWRWPNPVMLCPIEEDELGFSVWDPR 117
+WA+LVAR CQLYPNAI S LV +FF V+++W WPNPV+L EE L VWDPR
Sbjct: 248 SWAMLVARTCQLYPNAIASTLVHKFFLVFSKWEWPNPVLLKQPEECNLNLPVWDPR 303
Score = 50 (22.7 bits), Expect = 6.0e-41, Sum P(2) = 6.0e-41
Identities = 23/93 (24%), Positives = 33/93 (35%)
Query: 313 PRPSRHFNEQAGKPCEDVKMCQSGSSGRHLKREKEHEMEEVRPDKSVKRASISSEVPQPV 372
PRPS + + P VK S K+ K E +E D + S +
Sbjct: 568 PRPSGNAATKVPNPIVGVKRTSSPHKEESPKKTKTEE-DETSEDANCLALSGHDKTETKE 626
Query: 373 SPGKTTGDSTNDSEVMSAGGHLVSEKDTMAAHM 405
G T S SE A LV+ + T + +
Sbjct: 627 QVGMET--SAAPSEAAPASASLVASQKTSSTDL 657
>UNIPROTKB|H0YJ00 [details] [associations]
symbol:PAPOLA "Poly(A) polymerase alpha" species:9606 "Homo
sapiens" [GO:0004652 "polynucleotide adenylyltransferase activity"
evidence=IEA] [GO:0043631 "RNA polyadenylation" evidence=IEA]
InterPro:IPR007012 Pfam:PF04928 GO:GO:0006351 GO:GO:0004652
EMBL:AL163051 HGNC:HGNC:14981 ChiTaRS:PAPOLA
Ensembl:ENST00000553461 Uniprot:H0YJ00
Length = 203
Score = 412 (150.1 bits), Expect = 1.6e-38, P = 1.6e-38
Identities = 72/116 (62%), Positives = 91/116 (78%)
Query: 2 SVLNNVDEQTVRSLNGCRVADQILKHVPNVEHFRMTLRCLKFWAKRRGVYSNVTGFLGGV 61
S+L N+D + +RSLNGCRV D+IL VPN+++FR+TLR +K WAKR +YSN+ GFLGGV
Sbjct: 74 SLLKNLDIRCIRSLNGCRVTDEILHLVPNIDNFRLTLRAIKLWAKRHNIYSNILGFLGGV 133
Query: 62 NWALLVARVCQLYPNAIPSMLVSRFFRVYTQWRWPNPVMLCPIEEDELGFSVWDPR 117
+WA+LVAR CQLYPNAI S LV +FF V+++W WPNPV+L EE L VWDPR
Sbjct: 134 SWAMLVARTCQLYPNAIASTLVHKFFLVFSKWEWPNPVLLKQPEECNLNLPVWDPR 189
>TAIR|locus:2084274 [details] [associations]
symbol:PAPS3 "poly(A) polymerase 3" species:3702
"Arabidopsis thaliana" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0004652 "polynucleotide adenylyltransferase activity"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA;ISS] [GO:0016779
"nucleotidyltransferase activity" evidence=IEA] [GO:0031123 "RNA
3'-end processing" evidence=IEA] [GO:0043631 "RNA polyadenylation"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=RCA] InterPro:IPR007010 InterPro:IPR007012
InterPro:IPR011068 InterPro:IPR014492 Pfam:PF04926 Pfam:PF04928
PIRSF:PIRSF018425 GO:GO:0005634 GO:GO:0005737 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0006351 GO:GO:0003723 GO:GO:0004652
GO:GO:0043631 KO:K14376 eggNOG:COG5186 Gene3D:3.30.70.590
SUPFAM:SSF55003 EMBL:AK221644 IPI:IPI00518099 RefSeq:NP_187308.3
UniGene:At.40500 ProteinModelPortal:Q56XM9 SMR:Q56XM9 IntAct:Q56XM9
STRING:Q56XM9 EnsemblPlants:AT3G06560.1 GeneID:819835
KEGG:ath:AT3G06560 TAIR:At3g06560 HOGENOM:HOG000006246
InParanoid:Q56XM9 OMA:IDETSWK PhylomeDB:Q56XM9
ProtClustDB:CLSN2699159 Genevestigator:Q56XM9 Uniprot:Q56XM9
Length = 507
Score = 406 (148.0 bits), Expect = 7.0e-38, P = 7.0e-38
Identities = 102/281 (36%), Positives = 153/281 (54%)
Query: 4 LNNVDEQTVRSLNGCRVADQILKHVPNVEHFRMTLRCLKFWAKRRGVYSNVTGFLGGVNW 63
L ++DE + + L+G R IL+ VP++E F+ LRC+K WAKRRGVY N+ GFLGGV+
Sbjct: 170 LRDIDETSWKILSGVRANKCILQLVPSLELFQSLLRCVKLWAKRRGVYGNLNGFLGGVHM 229
Query: 64 ALLVARVCQLYPNAIPSMLVSRFFRVYTQWRWPNPVMLCPIEEDELGFSVWDPRKNPRDR 123
A+L A VC PNA S L++ FF + W+WP PV+L ED + P P
Sbjct: 230 AILAAFVCGYQPNATLSSLLANFFYTFAHWQWPTPVVLL---EDTYPSTGAPPGLMPIQ- 285
Query: 124 SHHMPIITPAYPCMNSSYNVSLSTLRVMTEQFQWGNRICEE-IELNKAQWSALFEPYLFF 182
+P + Y C NS+ ++ ST + +F G+ + ++ ++LN + W LFE Y +
Sbjct: 286 ---LPCGSHQY-C-NST--ITRSTFYKIVAEFLLGHNLTKDYLKLNFS-WKDLFELYPYA 337
Query: 183 EAYKNYLQVDIVXXXXXXLLTWKGWVESRFRQLTLKIERDTNGLLQCHPYPNEYIDPSKP 242
Y + ++ + L W GWV+SRFR L +KIE + G+ C P P EY++
Sbjct: 338 NTYTWFTKIHLSAANQEDLSDWVGWVKSRFRCLLIKIE-EVYGI--CDPNPTEYVETYTK 394
Query: 243 CPNSAFFMGLR-RKEGVTGKERQQFDIRGTVDN--FREEIG 280
PN F+ GL+ R V+ E + D V++ FR +G
Sbjct: 395 QPNIVFYWGLQLRTINVSDIESVKIDFLKNVNSGSFRGTVG 435
>UNIPROTKB|D4A764 [details] [associations]
symbol:Papola "Protein Papola" species:10116 "Rattus
norvegicus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0004652
"polynucleotide adenylyltransferase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0043631 "RNA
polyadenylation" evidence=IEA] InterPro:IPR002934
InterPro:IPR007010 InterPro:IPR007012 InterPro:IPR011068
InterPro:IPR014492 Pfam:PF01909 Pfam:PF04926 Pfam:PF04928
PIRSF:PIRSF018425 RGD:1308673 GO:GO:0005634 GO:GO:0006351
GO:GO:0003723 GO:GO:0004652 GO:GO:0043631 Gene3D:3.30.70.590
SUPFAM:SSF55003 IPI:IPI00776821 Ensembl:ENSRNOT00000057215
ArrayExpress:D4A764 Uniprot:D4A764
Length = 657
Score = 335 (123.0 bits), Expect = 2.7e-33, Sum P(2) = 2.7e-33
Identities = 58/92 (63%), Positives = 76/92 (82%)
Query: 2 SVLNNVDEQTVRSLNGCRVADQILKHVPNVEHFRMTLRCLKFWAKRRGVYSNVTGFLGGV 61
S+L N+D + +RSLNGCRV D+IL VPN+++FR+TLR +K WAKR +YSN+ GFLGGV
Sbjct: 188 SLLKNLDIRCIRSLNGCRVTDEILHLVPNIDNFRLTLRAIKLWAKRHNIYSNILGFLGGV 247
Query: 62 NWALLVARVCQLYPNAIPSMLVSRFFRVYTQW 93
+WA+LVAR CQLYPNAI S LV +FF V+++W
Sbjct: 248 SWAMLVARTCQLYPNAIASTLVHKFFLVFSKW 279
Score = 95 (38.5 bits), Expect = 2.7e-33, Sum P(2) = 2.7e-33
Identities = 43/174 (24%), Positives = 72/174 (41%)
Query: 202 LTWKGWVESRFRQLTLKIERDTNGLLQCHPYPNEYIDPSKPCPNSAFF-----MGLRRKE 256
L W G VES+ R L +E++ + H P + P K P+ F +GL K+
Sbjct: 306 LEWVGLVESKIRILVGSLEKN-EFITLAHVNPQSFPAP-KESPDREEFRTMWVIGLVFKK 363
Query: 257 GVTGKERQ---QFDIRGTVDN-FREEIGMYMFWKPGMDIYVSHVRRRQLPSFVFPDGYKR 312
+ +DI+ D +R+ I MF + M I HV+R+QL +
Sbjct: 364 TENSENLSVDLTYDIQSFTDTVYRQAINSKMF-ELDMKIAAMHVKRKQLHQLL------- 415
Query: 313 PRPSRHFNEQAGKPCEDVKMCQSGSSGRHLKREKEHEMEEVRPDKSVKRASISS 366
PS ++ E VK+ S L + ++ M P ++K + ++S
Sbjct: 416 --PSHVLQKRKKHSTEGVKLAALNDSSLDLSMDSDNSMSVPSPTSAMKTSPLNS 467
Score = 50 (22.7 bits), Expect = 1.4e-28, Sum P(2) = 1.4e-28
Identities = 23/93 (24%), Positives = 33/93 (35%)
Query: 313 PRPSRHFNEQAGKPCEDVKMCQSGSSGRHLKREKEHEMEEVRPDKSVKRASISSEVPQPV 372
PRPS + + P VK S K+ K E +E D + S +
Sbjct: 544 PRPSGNAATKVPNPIVGVKRTSSPHKEESPKKTKTEE-DETSEDANCLALSGHDKTETKE 602
Query: 373 SPGKTTGDSTNDSEVMSAGGHLVSEKDTMAAHM 405
G T S SE A LV+ + T + +
Sbjct: 603 QVGMET--SAAPSEAAPASASLVASQKTSSTDL 633
>UNIPROTKB|F8WAT4 [details] [associations]
symbol:PAPOLG "Poly(A) polymerase gamma" species:9606 "Homo
sapiens" [GO:0004652 "polynucleotide adenylyltransferase activity"
evidence=IEA] [GO:0043631 "RNA polyadenylation" evidence=IEA]
InterPro:IPR002934 InterPro:IPR007012 Pfam:PF01909 Pfam:PF04928
GO:GO:0006351 GO:GO:0004652 HGNC:HGNC:14982 EMBL:AC011245
EMBL:AC012498 IPI:IPI00893537 ProteinModelPortal:F8WAT4 SMR:F8WAT4
Ensembl:ENST00000414060 ArrayExpress:F8WAT4 Bgee:F8WAT4
Uniprot:F8WAT4
Length = 234
Score = 324 (119.1 bits), Expect = 1.1e-28, P = 1.1e-28
Identities = 59/92 (64%), Positives = 74/92 (80%)
Query: 2 SVLNNVDEQTVRSLNGCRVADQILKHVPNVEHFRMTLRCLKFWAKRRGVYSNVTGFLGGV 61
S L ++D + +RSLNGCRV D+IL VPN E FR+TLR +K WAKRRG+YSN+ GFLGGV
Sbjct: 143 SRLRSLDIRCIRSLNGCRVTDEILHLVPNKETFRLTLRAVKLWAKRRGIYSNMLGFLGGV 202
Query: 62 NWALLVARVCQLYPNAIPSMLVSRFFRVYTQW 93
+WA+LVAR CQLYPNA S LV +FF V+++W
Sbjct: 203 SWAMLVARTCQLYPNAAASTLVHKFFLVFSKW 234
>UNIPROTKB|G4N5I8 [details] [associations]
symbol:MGG_06121 "Uncharacterized protein" species:242507
"Magnaporthe oryzae 70-15" [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR007010 InterPro:IPR007012
InterPro:IPR009097 InterPro:IPR011068 Pfam:PF04926 Pfam:PF04928
Pfam:PF03372 GO:GO:0005634 EMBL:CM001233 GO:GO:0006351
GO:GO:0003723 SUPFAM:SSF55144 InterPro:IPR005135 SUPFAM:SSF56219
GO:GO:0004652 GO:GO:0043631 SUPFAM:SSF55003 RefSeq:XP_003711988.1
ProteinModelPortal:G4N5I8 EnsemblFungi:MGG_06121T0 GeneID:2684277
KEGG:mgr:MGG_06121 InterPro:IPR007547 Pfam:PF04457 Uniprot:G4N5I8
Length = 1238
Score = 175 (66.7 bits), Expect = 1.9e-09, P = 1.9e-09
Identities = 45/175 (25%), Positives = 82/175 (46%)
Query: 10 QTVRSLNGCRVADQILKHVPNVEHFRMTLRCLKFWAKRRGVYSNVTGFLGGVNWALLVAR 69
QT+ L R D + + +P++ FR+ R +K WA+ RG+YS G+LGG+ ++L+AR
Sbjct: 768 QTLGKLKALRDLDYLRETIPDLSKFRLAHRAIKTWAQSRGIYSAKFGYLGGIQVSILLAR 827
Query: 70 VCQLYPN------AIPSMLVSRFFRVYTQWRWPNPVMLCPIEEDELGFSVWDPRKNPRDR 123
VC+L ++P +L S FF Y + W N + P +L + R
Sbjct: 828 VCKLLARDYGQEVSVPDIL-SSFFSHYASFDWRNKIAFDPFFHKKLNYL----------R 876
Query: 124 SHHMPIITPAY--PCMNSSYNVSLSTLRVMTEQFQWGNRICEEIELNKAQWSALF 176
S P+ + P +N++ ++ +++ + + N + E + W F
Sbjct: 877 SAREPLAILGFFPPALNTTLAATVPSMKAIARELSQANELLNEDGMT---WDTFF 928
>UNIPROTKB|Q59G05 [details] [associations]
symbol:PAPOLG "Poly(A) polymerase gamma variant"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0004652 "polynucleotide adenylyltransferase activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0043631 "RNA
polyadenylation" evidence=IEA] InterPro:IPR007010
InterPro:IPR011068 Pfam:PF04926 GO:GO:0005634 GO:GO:0003723
GO:GO:0004652 GO:GO:0043631 KO:K14376 Gene3D:3.30.70.590
SUPFAM:SSF55003 HOGENOM:HOG000204376 HOVERGEN:HBG053502
RefSeq:NP_075045.2 UniGene:Hs.387471 GeneID:64895 KEGG:hsa:64895
CTD:64895 HGNC:HGNC:14982 GenomeRNAi:64895 NextBio:67037
EMBL:AC011245 EMBL:AC012498 EMBL:AB209304 IPI:IPI00555821
ProteinModelPortal:Q59G05 SMR:Q59G05 STRING:Q59G05 PRIDE:Q59G05
Ensembl:ENST00000412217 ArrayExpress:Q59G05 Bgee:Q59G05
Uniprot:Q59G05
Length = 382
Score = 169 (64.5 bits), Expect = 2.5e-09, Sum P(2) = 2.5e-09
Identities = 62/247 (25%), Positives = 105/247 (42%)
Query: 150 VMTEQFQWGNRICEEIELNKAQWSALFEPYLFFEAYKNYLQVDIVXXXXXXLLTWKGWVE 209
VM E+F+ G + +EI K+ WS L EP FF+ Y++Y+ + L W G VE
Sbjct: 3 VMVEEFKQGLAVTDEILQGKSDWSKLLEPPNFFQKYRHYIVLTASASTEENHLEWVGLVE 62
Query: 210 SRFRQLTLKIERDTNGLLQCHPYPNEYIDPSKPCPN----SAFFMGL--RRKEGVTGKER 263
S+ R L +ER+ + H P + + + S +F+G+ RR E
Sbjct: 63 SKIRVLVGNLERN-EFITLAHVNPQSFPGNKEHHKDNNYVSMWFLGIIFRRVENAESVNI 121
Query: 264 Q-QFDIRGTVDN-FREEIGMYMFWKPGMDIYVSHVRRRQLPSFVFPDGYKRPRPSRHFNE 321
+DI+ D +R+ + M K GM I +HV+++QL ++ P+ +
Sbjct: 122 DLTYDIQSFTDTVYRQANNINML-KEGMKIEATHVKKKQLHHYL---------PAEILQK 171
Query: 322 QAGKPCEDVKMCQSGSSGRHLKREKEHEMEEVRPDKSVKRASISSEVPQPVSPGKTTGDS 381
+ + DV G + L + D S +S+ P S G+T +S
Sbjct: 172 KKKQSLSDVNRSSGGLQSKRLSLDSSCLDSSRDTDNGTPFNSPASKSDSP-SVGETERNS 230
Query: 382 TNDSEVM 388
+ V+
Sbjct: 231 AEPAAVI 237
Score = 39 (18.8 bits), Expect = 2.5e-09, Sum P(2) = 2.5e-09
Identities = 12/58 (20%), Positives = 25/58 (43%)
Query: 467 LNVKGVAIKVDQEL--VKPCNQMTVVEVAGREYESKSCTQNLSCEGDDCVASLDTLSE 522
L++ + KVD + V P T+ V GR + T + +G + + +++
Sbjct: 250 LSIPVIGAKVDSTVKTVSPPTVCTIPTVVGRNVIPRITTPHNPAQGQPHLNGMSNITK 307
>UNIPROTKB|F1PYB9 [details] [associations]
symbol:PAPOLG "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006378 "mRNA polyadenylation" evidence=IBA]
[GO:0005634 "nucleus" evidence=IBA] [GO:0004652 "polynucleotide
adenylyltransferase activity" evidence=IBA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR007010 InterPro:IPR011068
Pfam:PF04926 GO:GO:0005634 GO:GO:0006378 GO:GO:0003723
GO:GO:0004652 Gene3D:3.30.70.590 SUPFAM:SSF55003
GeneTree:ENSGT00390000017928 EMBL:AAEX03007549
Ensembl:ENSCAFT00000004771 Uniprot:F1PYB9
Length = 384
Score = 166 (63.5 bits), Expect = 2.9e-09, P = 2.9e-09
Identities = 48/164 (29%), Positives = 79/164 (48%)
Query: 150 VMTEQFQWGNRICEEIELNKAQWSALFEPYLFFEAYKNYLQVDIVXXXXXXLLTWKGWVE 209
VM E+F+ G + +EI K+ WS L EP FF+ Y++Y+ + L W G VE
Sbjct: 3 VMVEEFKQGLAVTDEILQGKSDWSKLLEPPNFFQKYRHYIVLTASASTEENHLEWVGLVE 62
Query: 210 SRFRQLTLKIERDTNGLLQCHPYPNEYIDPSKPCPN----SAFFMGL--RRKEGVTGKER 263
S+ R L +ER+ + H P + + + S +F+G+ RR E
Sbjct: 63 SKIRVLVGNLERN-EFITLAHVNPQSFPGNKEHHKDNNYVSMWFLGIIFRRVENAESVNI 121
Query: 264 Q-QFDIRGTVDN-FREEIGMYMFWKPGMDIYVSHVRRRQLPSFV 305
+DI+ D +R+ + M K GM I +HV+++QL ++
Sbjct: 122 DLTYDIQSFTDTVYRQANNINML-KEGMKIEATHVKKKQLHHYL 164
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.318 0.133 0.412 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 550 544 0.00095 119 3 11 22 0.40 34
35 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 50
No. of states in DFA: 626 (67 KB)
Total size of DFA: 360 KB (2178 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 48.97u 0.10s 49.07t Elapsed: 00:00:02
Total cpu time: 48.98u 0.10s 49.08t Elapsed: 00:00:03
Start: Sat May 11 07:56:56 2013 End: Sat May 11 07:56:59 2013