BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008889
(550 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q54J73|PAP_DICDI Poly(A) polymerase OS=Dictyostelium discoideum GN=papA PE=3 SV=1
Length = 809
Score = 303 bits (776), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 153/356 (42%), Positives = 215/356 (60%), Gaps = 17/356 (4%)
Query: 2 SVLNNVDEQTVRSLNGCRVADQILKHVPNVEHFRMTLRCLKFWAKRRGVYSNVTGFLGGV 61
S L N+DE+++ SLNGCRV DQILK VPN+ +FRM LRC+K WA RRG+YSN+ GFLGGV
Sbjct: 222 SFLKNIDEKSILSLNGCRVTDQILKLVPNIPNFRMALRCIKLWAIRRGIYSNILGFLGGV 281
Query: 62 NWALLVARVCQLYPNAIPSMLVSRFFRVYTQWRWPNPVMLCPIEEDE-LGFSVWDPRKNP 120
+WALL AR+CQLYPN+ PS ++ RFF+VY W+WP P++LC I+E LG VW+P+
Sbjct: 282 SWALLTARICQLYPNSAPSTIIHRFFKVYEIWKWPAPILLCHIQEGGILGPKVWNPK--- 338
Query: 121 RDRSHHMPIITPAYPCMNSSYNVSLSTLRVMTEQFQWGNRICEEIELNKAQWSALFEPYL 180
RD++H MPIITPAYP MNS+YNVS STL++M +F G I +IE + W L E
Sbjct: 339 RDKAHLMPIITPAYPSMNSTYNVSKSTLQLMKSEFVRGAEITRKIETGECTWKNLLEKCD 398
Query: 181 FFEAYKNYLQVDIVAADADDLLTWKGWVESRFRQLTLKIERDTNGLLQCHPYPNEYI--- 237
FF Y Y+++D + + +D W+GW+ES+ R L +E T + PYP +
Sbjct: 399 FFTRYSFYIEIDCYSMNEEDSRKWEGWIESKLRFLISNLE-STPKMKFAVPYPKGFTNNL 457
Query: 238 ----DPSKPCPNSAFFMGLRRKEGVTGKERQQFDIRGTVDNFREEIGMYMFWKPG---MD 290
+P + C ++FFMGL T + D+ V F I ++ +P MD
Sbjct: 458 HKANNPDQIC--TSFFMGLSFNFSNTPGADKSVDLTKAVTEFTGIIKDWLRTQPNPDTMD 515
Query: 291 IYVSHVRRRQLPSFVFPDGYKRPRPSRHFNEQAGKPCEDVKMCQSGSSGRHLKREK 346
I V +++++QLP+FV +G + P + G+P K +S +S L K
Sbjct: 516 IKVQYIKKKQLPAFVKDEGPEEPVKTTKKRSSTGEPSATRKKLKSENSDNKLNSPK 571
>sp|P25500|PAPOA_BOVIN Poly(A) polymerase alpha OS=Bos taurus GN=PAPOLA PE=1 SV=3
Length = 739
Score = 287 bits (734), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 158/370 (42%), Positives = 216/370 (58%), Gaps = 21/370 (5%)
Query: 6 NVDEQTVRSLNGCRVADQILKHVPNVEHFRMTLRCLKFWAKRRGVYSNVTGFLGGVNWAL 65
N+D + +RSLNGCRV D+IL VPN+++FR+TLR +K WAKR +YSN+ GFLGGV+WA+
Sbjct: 192 NLDIRCIRSLNGCRVTDEILHLVPNIDNFRLTLRAIKLWAKRHNIYSNILGFLGGVSWAM 251
Query: 66 LVARVCQLYPNAIPSMLVSRFFRVYTQWRWPNPVMLCPIEEDELGFSVWDPRKNPRDRSH 125
LVAR CQLYPNAI S LV +FF V+++W WPNPV+L EE L VWDPR NP DR H
Sbjct: 252 LVARTCQLYPNAIASTLVHKFFLVFSKWEWPNPVLLKQPEECNLNLPVWDPRVNPSDRYH 311
Query: 126 HMPIITPAYPCMNSSYNVSLSTLRVMTEQFQWGNRICEEIELNKAQWSALFEPYLFFEAY 185
MPIITPAYP NS+YNVS+ST VM E+F+ G I +EI L+KA+WS LFE FF+ Y
Sbjct: 312 LMPIITPAYPQQNSTYNVSVSTRMVMVEEFKQGLAITDEILLSKAEWSKLFEAPNFFQKY 371
Query: 186 KNYLQVDIVAADADDLLTWKGWVESRFRQLTLKIERDTNGLL-----QCHPYPNEYIDPS 240
K+Y+ + A L W G VES+ R L +E++ L Q P P E +P
Sbjct: 372 KHYIVLLASAPTEKQRLEWVGLVESKIRILVGSLEKNEFITLAHVNPQSFPAPKE--NPD 429
Query: 241 KPCPNSAFFMGLRRKEGVTGKERQ---QFDIRGTVDN-FREEIGMYMFWKPGMDIYVSHV 296
K + + +GL K+ + +DI+ D +R+ I MF + M I HV
Sbjct: 430 KEEFRTMWVIGLVFKKTENSENLSVDLTYDIQSFTDTVYRQAINSKMF-EVDMKIAAMHV 488
Query: 297 RRRQLPSFVFPDGYKRPRPSRHFNEQAGKPCEDVKMCQSGSSGRHLKREKEHEMEEVRPD 356
+R+QL + PS ++ E VK+ S L + ++ M P
Sbjct: 489 KRKQLHQLL---------PSHVLQKKKKHSTEGVKLTPLNDSSLDLSMDSDNSMSVPSPT 539
Query: 357 KSVKRASISS 366
++K + ++S
Sbjct: 540 SAMKTSPLNS 549
>sp|P51003|PAPOA_HUMAN Poly(A) polymerase alpha OS=Homo sapiens GN=PAPOLA PE=1 SV=4
Length = 745
Score = 286 bits (731), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 157/370 (42%), Positives = 215/370 (58%), Gaps = 21/370 (5%)
Query: 6 NVDEQTVRSLNGCRVADQILKHVPNVEHFRMTLRCLKFWAKRRGVYSNVTGFLGGVNWAL 65
N+D + +RSLNGCRV D+IL VPN+++FR+TLR +K WAKR +YSN+ GFLGGV+WA+
Sbjct: 192 NLDIRCIRSLNGCRVTDEILHLVPNIDNFRLTLRAIKLWAKRHNIYSNILGFLGGVSWAM 251
Query: 66 LVARVCQLYPNAIPSMLVSRFFRVYTQWRWPNPVMLCPIEEDELGFSVWDPRKNPRDRSH 125
LVAR CQLYPNAI S LV +FF V+++W WPNPV+L EE L VWDPR NP DR H
Sbjct: 252 LVARTCQLYPNAIASTLVHKFFLVFSKWEWPNPVLLKQPEECNLNLPVWDPRVNPSDRYH 311
Query: 126 HMPIITPAYPCMNSSYNVSLSTLRVMTEQFQWGNRICEEIELNKAQWSALFEPYLFFEAY 185
MPIITPAYP NS+YNVS+ST VM E+F+ G I +EI L+KA+WS LFE FF+ Y
Sbjct: 312 LMPIITPAYPQQNSTYNVSVSTRMVMVEEFKQGLAITDEILLSKAEWSKLFEAPNFFQKY 371
Query: 186 KNYLQVDIVAADADDLLTWKGWVESRFRQLTLKIERDTNGLL-----QCHPYPNEYIDPS 240
K+Y+ + A L W G VES+ R L +E++ L Q P P E +P
Sbjct: 372 KHYIVLLASAPTEKQRLEWVGLVESKIRILVGSLEKNEFITLAHVNPQSFPAPKE--NPD 429
Query: 241 KPCPNSAFFMGLRRKEGVTGKERQ---QFDIRGTVDN-FREEIGMYMFWKPGMDIYVSHV 296
K + + +GL K+ + +DI+ D +R+ I MF + M I HV
Sbjct: 430 KEEFRTMWVIGLVFKKTENSENLSVDLTYDIQSFTDTVYRQAINSKMF-EVDMKIAAMHV 488
Query: 297 RRRQLPSFVFPDGYKRPRPSRHFNEQAGKPCEDVKMCQSGSSGRHLKREKEHEMEEVRPD 356
+R+QL + P+ ++ E VK+ S L + ++ M P
Sbjct: 489 KRKQLHQLL---------PNHVLQKKKKHSTEGVKLTALNDSSLDLSMDSDNSMSVPSPT 539
Query: 357 KSVKRASISS 366
+ K + ++S
Sbjct: 540 SATKTSPLNS 549
>sp|Q61183|PAPOA_MOUSE Poly(A) polymerase alpha OS=Mus musculus GN=Papola PE=1 SV=4
Length = 739
Score = 285 bits (730), Expect = 5e-76, Method: Compositional matrix adjust.
Identities = 157/370 (42%), Positives = 215/370 (58%), Gaps = 21/370 (5%)
Query: 6 NVDEQTVRSLNGCRVADQILKHVPNVEHFRMTLRCLKFWAKRRGVYSNVTGFLGGVNWAL 65
N+D + +RSLNGCRV D+IL VPN+++FR+TLR +K WAKR +YSN+ GFLGGV+WA+
Sbjct: 192 NLDIRCIRSLNGCRVTDEILHLVPNIDNFRLTLRAIKLWAKRHNIYSNILGFLGGVSWAM 251
Query: 66 LVARVCQLYPNAIPSMLVSRFFRVYTQWRWPNPVMLCPIEEDELGFSVWDPRKNPRDRSH 125
LVAR CQLYPNAI S LV +FF V+++W WPNPV+L EE L VWDPR NP DR H
Sbjct: 252 LVARTCQLYPNAIASTLVHKFFLVFSKWEWPNPVLLKQPEECNLNLPVWDPRVNPSDRYH 311
Query: 126 HMPIITPAYPCMNSSYNVSLSTLRVMTEQFQWGNRICEEIELNKAQWSALFEPYLFFEAY 185
MPIITPAYP NS+YNVS+ST VM E+F+ G I +EI L+KA+WS LFE FF+ Y
Sbjct: 312 LMPIITPAYPQQNSTYNVSVSTRMVMVEEFKQGLAITDEILLSKAEWSKLFEAPNFFQKY 371
Query: 186 KNYLQVDIVAADADDLLTWKGWVESRFRQLTLKIERDTNGLL-----QCHPYPNEYIDPS 240
K+Y+ + A L W G VES+ R L +E++ L Q P P E P
Sbjct: 372 KHYIVLLASAPTEKQRLEWVGLVESKIRILVGSLEKNEFITLAHVNPQSFPAPKE--SPD 429
Query: 241 KPCPNSAFFMGLRRKEGVTGKERQ---QFDIRGTVDN-FREEIGMYMFWKPGMDIYVSHV 296
+ + + +GL K+ + +DI+ D +R+ I MF + M I HV
Sbjct: 430 REEFRTMWVIGLVFKKTENSENLSVDLTYDIQSFTDTVYRQAINSKMF-ELDMKIAAMHV 488
Query: 297 RRRQLPSFVFPDGYKRPRPSRHFNEQAGKPCEDVKMCQSGSSGRHLKREKEHEMEEVRPD 356
+R+QL + PS ++ E VK+ S L + ++ M P
Sbjct: 489 KRKQLHQLL---------PSHVLQKRKKHSTEGVKLTALNDSSLDLSMDSDNSMSVPSPT 539
Query: 357 KSVKRASISS 366
++K + ++S
Sbjct: 540 SAMKTSPLNS 549
>sp|Q9WVP6|PAPOB_MOUSE Poly(A) polymerase beta OS=Mus musculus GN=Papolb PE=1 SV=2
Length = 641
Score = 278 bits (711), Expect = 8e-74, Method: Compositional matrix adjust.
Identities = 166/423 (39%), Positives = 228/423 (53%), Gaps = 33/423 (7%)
Query: 6 NVDEQTVRSLNGCRVADQILKHVPNVEHFRMTLRCLKFWAKRRGVYSNVTGFLGGVNWAL 65
N+D + +RSLNGCRV D+IL VPN++ FR+TLR +K WAK +YSN+ GFLGGV+WA+
Sbjct: 192 NLDIRCIRSLNGCRVTDEILHLVPNIDSFRLTLRAIKLWAKCHNIYSNILGFLGGVSWAM 251
Query: 66 LVARVCQLYPNAIPSMLVSRFFRVYTQWRWPNPVMLCPIEEDELGFSVWDPRKNPRDRSH 125
LVAR CQLYPNAI S LV +FF V+++W WPNPV+L EE L VWDPR NP DR H
Sbjct: 252 LVARTCQLYPNAIASTLVRKFFLVFSEWEWPNPVLLKEPEERNLNLPVWDPRVNPSDRYH 311
Query: 126 HMPIITPAYPCMNSSYNVSLSTLRVMTEQFQWGNRICEEIELNKAQWSALFEPYLFFEAY 185
MPIITPAYP NS+YNVS+ST VM E+F+ G I EI LNKA+WS LFE FF+ Y
Sbjct: 312 LMPIITPAYPQQNSTYNVSVSTRMVMIEEFKQGLAITHEILLNKAEWSKLFEAPSFFQKY 371
Query: 186 KNYLQVDIVAADADDLLTWKGWVESRFRQLTLKIERDTNGLL-----QCHPYPNEYIDPS 240
K+Y+ + A L W G VES+ R L +E++ L Q P P E D
Sbjct: 372 KHYIVLLASAPTEKQHLEWVGLVESKIRILVGSLEKNEFITLAHVNPQSFPAPKETAD-- 429
Query: 241 KPCPNSAFFMGLRRKEGVTGKERQ---QFDIRGTVDN-FREEIGMYMFWKPGMDIYVSHV 296
K + + +GL K+ + +DI+ D +R+ I MF + M I H+
Sbjct: 430 KEEFRTMWVIGLVLKKPENSEILSIDLTYDIQSFTDTVYRQAINSKMF-EMDMKIAAMHL 488
Query: 297 RRRQLPSFVFPDGYKRPRPSRHFNEQAGKPCEDVKMCQSGSSGRHLKREKEHEMEEVRPD 356
RR++L + P+ ++ E V++ S L + E+ M P
Sbjct: 489 RRKELHQLL---------PNHVLQKKETHLTESVRLTAVTDSSLLLSIDSENSMTAPSPT 539
Query: 357 KSVKRASISSEVPQPVSPGKTTGDSTNDSEVMSAGGHLVSEKDTMAAH---MQLDGIVNH 413
++K ++ G G ++ VM+A + D H ++ GI
Sbjct: 540 GTMKTGPLT---------GNPQGRNSPALAVMAASVTNIQFPDVSLQHVNPIESSGIALS 590
Query: 414 ESV 416
ES+
Sbjct: 591 ESI 593
>sp|P51004|PAPO1_XENLA Poly(A) polymerase alpha-A (Fragment) OS=Xenopus laevis GN=papola-a
PE=2 SV=1
Length = 715
Score = 278 bits (711), Expect = 8e-74, Method: Compositional matrix adjust.
Identities = 150/319 (47%), Positives = 194/319 (60%), Gaps = 16/319 (5%)
Query: 6 NVDEQTVRSLNGCRVADQILKHVPNVEHFRMTLRCLKFWAKRRGVYSNVTGFLGGVNWAL 65
N+D + +RSLNGCRV D+IL VPN++ FR+TLR +K WAKR +YSN+ GFLGGV+WA+
Sbjct: 174 NLDIRCIRSLNGCRVTDEILHLVPNIDSFRLTLRAIKLWAKRHNIYSNILGFLGGVSWAM 233
Query: 66 LVARVCQLYPNAIPSMLVSRFFRVYTQWRWPNPVMLCPIEEDELGFSVWDPRKNPRDRSH 125
LVAR CQLYPNAI S LV +FF V+++W WPNPV+L EE L VWDPR NP DR H
Sbjct: 234 LVARTCQLYPNAIASTLVHKFFLVFSKWEWPNPVLLKQPEECNLNLPVWDPRVNPSDRYH 293
Query: 126 HMPIITPAYPCMNSSYNVSLSTLRVMTEQFQWGNRICEEIELNKAQWSALFEPYLFFEAY 185
MPIITPAYP NS+YNVS+ST VM E+F+ G I +EI L KA+WS LF+ FF+ Y
Sbjct: 294 LMPIITPAYPQQNSTYNVSVSTRAVMIEEFKQGLAITDEILLGKAEWSKLFDAPNFFQKY 353
Query: 186 KNYLQVDIVAADADDLLTWKGWVESRFRQLTLKIERDTNGLLQCHPYPNEYIDPSKPCPN 245
K+Y+ + A L W G VES+ R L +E++ L H P + PS+
Sbjct: 354 KHYILLLASAPTEKQRLEWVGLVESKIRILVGSLEKNEFITL-AHVNPRSFPAPSENMEK 412
Query: 246 SAF----FMGLRRKEGVTGKERQQFDIRGTVDNF-----REEIGMYMFWKPGMDIYVSHV 296
F +GL K+ + E D+ + +F R+ I MF + M I HV
Sbjct: 413 EEFRTMWVIGLVFKK-MENSENLSVDLTYDIQSFTDTVDRQAINSKMF-ETEMKIAAMHV 470
Query: 297 RRRQL----PSFVFPDGYK 311
+R+QL PS V P K
Sbjct: 471 KRKQLHQLQPSHVSPKKKK 489
>sp|Q6PCL9|PAPOG_MOUSE Poly(A) polymerase gamma OS=Mus musculus GN=Papolg PE=1 SV=1
Length = 739
Score = 276 bits (705), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 144/318 (45%), Positives = 192/318 (60%), Gaps = 22/318 (6%)
Query: 2 SVLNNVDEQTVRSLNGCRVADQILKHVPNVEHFRMTLRCLKFWAKRRGVYSNVTGFLGGV 61
S L ++D + +RSLNGCRV D+IL VPN E FR+TLR +K WAKRRG+YSN+ GFLGGV
Sbjct: 187 SRLRSLDIRCIRSLNGCRVTDEILHLVPNKETFRLTLRAVKLWAKRRGIYSNMLGFLGGV 246
Query: 62 NWALLVARVCQLYPNAIPSMLVSRFFRVYTQWRWPNPVMLCPIEEDELGFSVWDPRKNPR 121
+WA+LVAR CQLYPNA S LV +FF V+++W WPNPV+L EE L VWDPR NP
Sbjct: 247 SWAMLVARTCQLYPNAAASTLVHKFFLVFSKWEWPNPVLLKQPEESNLNLPVWDPRVNPS 306
Query: 122 DRSHHMPIITPAYPCMNSSYNVSLSTLRVMTEQFQWGNRICEEIELNKAQWSALFEPYLF 181
DR H MPIITPAYP NS+YNVS ST VM E+F+ G + +EI K+ WS L EP F
Sbjct: 307 DRYHLMPIITPAYPQQNSTYNVSTSTRTVMVEEFKQGLAVTDEILQGKSDWSKLLEPPNF 366
Query: 182 FEAYKNYLQVDIVAADADDLLTWKGWVESRFRQLTLKIERD---TNGLLQCHPYP----- 233
F+ Y++Y+ + A+ ++ L W G VES+ R L +ER+ T + +P
Sbjct: 367 FQKYRHYIVLTASASTEENHLEWVGLVESKIRVLVGNLERNEFITLAHVNPQSFPGNKEH 426
Query: 234 ---NEYIDPSKPCPNSAFFMGL--RRKEGVTGKERQ-QFDIRGTVDNFREEIGMYMFWKP 287
N Y+ S +F+G+ RR E +DI+ D + K
Sbjct: 427 HKANNYV--------SMWFLGIIFRRVENAESVNIDLTYDIQSFTDTVYRQANNINMLKD 478
Query: 288 GMDIYVSHVRRRQLPSFV 305
GM I +HV+++QL ++
Sbjct: 479 GMKIEATHVKKKQLHHYL 496
>sp|Q9BWT3|PAPOG_HUMAN Poly(A) polymerase gamma OS=Homo sapiens GN=PAPOLG PE=1 SV=2
Length = 736
Score = 276 bits (705), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 144/318 (45%), Positives = 192/318 (60%), Gaps = 22/318 (6%)
Query: 2 SVLNNVDEQTVRSLNGCRVADQILKHVPNVEHFRMTLRCLKFWAKRRGVYSNVTGFLGGV 61
S L ++D + +RSLNGCRV D+IL VPN E FR+TLR +K WAKRRG+YSN+ GFLGGV
Sbjct: 187 SRLRSLDIRCIRSLNGCRVTDEILHLVPNKETFRLTLRAVKLWAKRRGIYSNMLGFLGGV 246
Query: 62 NWALLVARVCQLYPNAIPSMLVSRFFRVYTQWRWPNPVMLCPIEEDELGFSVWDPRKNPR 121
+WA+LVAR CQLYPNA S LV +FF V+++W WPNPV+L EE L VWDPR NP
Sbjct: 247 SWAMLVARTCQLYPNAAASTLVHKFFLVFSKWEWPNPVLLKQPEESNLNLPVWDPRVNPS 306
Query: 122 DRSHHMPIITPAYPCMNSSYNVSLSTLRVMTEQFQWGNRICEEIELNKAQWSALFEPYLF 181
DR H MPIITPAYP NS+YNVS ST VM E+F+ G + +EI K+ WS L EP F
Sbjct: 307 DRYHLMPIITPAYPQQNSTYNVSTSTRTVMVEEFKQGLAVTDEILQGKSDWSKLLEPPNF 366
Query: 182 FEAYKNYLQVDIVAADADDLLTWKGWVESRFRQLTLKIERD---TNGLLQCHPYP----- 233
F+ Y++Y+ + A+ ++ L W G VES+ R L +ER+ T + +P
Sbjct: 367 FQKYRHYIVLTASASTEENHLEWVGLVESKIRVLVGNLERNEFITLAHVNPQSFPGNKEH 426
Query: 234 ---NEYIDPSKPCPNSAFFMGL--RRKEGVTGKERQ-QFDIRGTVDNFREEIGMYMFWKP 287
N Y+ S +F+G+ RR E +DI+ D + K
Sbjct: 427 HKDNNYV--------SMWFLGIIFRRVENAESVNIDLTYDIQSFTDTVYRQANNINMLKE 478
Query: 288 GMDIYVSHVRRRQLPSFV 305
GM I +HV+++QL ++
Sbjct: 479 GMKIEATHVKKKQLHHYL 496
>sp|Q9NRJ5|PAPOB_HUMAN Poly(A) polymerase beta OS=Homo sapiens GN=PAPOLB PE=2 SV=1
Length = 636
Score = 274 bits (701), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 142/303 (46%), Positives = 190/303 (62%), Gaps = 8/303 (2%)
Query: 6 NVDEQTVRSLNGCRVADQILKHVPNVEHFRMTLRCLKFWAKRRGVYSNVTGFLGGVNWAL 65
N+D + +RSLNGCRV D+IL VPN+++FR+TLR +K WAK +YSN+ GFLGGV+WA+
Sbjct: 192 NLDIRCIRSLNGCRVTDEILHLVPNIDNFRLTLRAIKLWAKCHNIYSNILGFLGGVSWAM 251
Query: 66 LVARVCQLYPNAIPSMLVSRFFRVYTQWRWPNPVMLCPIEEDELGFSVWDPRKNPRDRSH 125
LVAR CQLYPNA+ S LV +FF V+++W WPNPV+L EE L VWDPR NP DR H
Sbjct: 252 LVARTCQLYPNAVASTLVRKFFLVFSEWEWPNPVLLKEPEERNLNLPVWDPRVNPSDRYH 311
Query: 126 HMPIITPAYPCMNSSYNVSLSTLRVMTEQFQWGNRICEEIELNKAQWSALFEPYLFFEAY 185
MPIITPAYP NS+YNVS+ST VM E+F+ G I EI L+KA+WS LFE FF+ Y
Sbjct: 312 LMPIITPAYPQQNSTYNVSISTRMVMIEEFKQGLAITHEILLSKAEWSKLFEAPSFFQKY 371
Query: 186 KNYLQVDIVAADADDLLTWKGWVESRFRQLTLKIERDTNGLL-----QCHPYPNEYIDPS 240
K+Y+ + A+ L W G VES+ R L +E++ L Q P P E D
Sbjct: 372 KHYIVLLASASTEKQHLEWVGLVESKIRILVGSLEKNEFITLAHVNPQSFPAPKENPDME 431
Query: 241 KPCPNSAFFMGLRRKEGVTGKERQ-QFDIRGTVDN-FREEIGMYMFWKPGMDIYVSHVRR 298
+ +GL++ + +DI+ D +R+ + MF + GM I H+RR
Sbjct: 432 EFRTMWVIGLGLKKPDNSEILSIDLTYDIQSFTDTVYRQAVNSKMF-EMGMKITAMHLRR 490
Query: 299 RQL 301
++L
Sbjct: 491 KEL 493
>sp|O42617|PAP_CANAL Poly(A) polymerase PAPalpha OS=Candida albicans (strain SC5314 /
ATCC MYA-2876) GN=PAPALPHA PE=3 SV=1
Length = 558
Score = 246 bits (629), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 114/236 (48%), Positives = 158/236 (66%), Gaps = 2/236 (0%)
Query: 2 SVLNNVDEQTVRSLNGCRVADQILKHVPNVEHFRMTLRCLKFWAKRRGVYSNVTGFLGGV 61
++L N+DE+ +RSLNG RV D+IL+ VP F+ LRC+K WA++R VY N+ GF GGV
Sbjct: 174 NLLKNLDEKDLRSLNGTRVTDEILQLVPKPTVFKHALRCIKLWAQQRAVYGNIFGFPGGV 233
Query: 62 NWALLVARVCQLYPNAIPSMLVSRFFRVYTQWRWPNPVMLCPIEEDELGFSVWDPRKNPR 121
WA+LVAR+CQLYPNA+ S +V +FF +YT+W WP PV+L IE+ L VW+PR P
Sbjct: 234 AWAMLVARICQLYPNAVSSAIVEKFFNIYTKWNWPEPVLLKSIEDGPLQVRVWNPRLYPH 293
Query: 122 DRSHHMPIITPAYPCMNSSYNVSLSTLRVMTEQFQWGNRICEEIELNKAQWSALFEPYLF 181
DR H MP+ITPAYP M +++N++ ST +V+ + G+ I +EI K WS LFE + F
Sbjct: 294 DRLHRMPVITPAYPSMCATHNITSSTQKVILAELSRGSSIMQEIHAGKKTWSDLFEKHSF 353
Query: 182 FEAYKNYLQVDIVAAD-ADDLLTWKGWVESRFRQLTLKIERDTNGLLQCHPYPNEY 236
F YK YL V + D A++ W G++ES+ RQL LK+E G+ HPY ++
Sbjct: 354 FYKYKFYLCVVAASIDSAEEHKKWSGFIESKLRQLVLKLEV-AEGVEIAHPYVKDF 408
>sp|Q10295|PAP_SCHPO Poly(A) polymerase pla1 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=pla1 PE=2 SV=1
Length = 566
Score = 244 bits (622), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 106/231 (45%), Positives = 155/231 (67%), Gaps = 1/231 (0%)
Query: 2 SVLNNVDEQTVRSLNGCRVADQILKHVPNVEHFRMTLRCLKFWAKRRGVYSNVTGFLGGV 61
++L V+E+ V SLNG RV DQIL+ VPN F+ LR +KFWA+RR +Y+NV GF GGV
Sbjct: 174 NLLKGVEERCVLSLNGTRVTDQILQLVPNRAVFKHALRAIKFWAQRRAIYANVVGFPGGV 233
Query: 62 NWALLVARVCQLYPNAIPSMLVSRFFRVYTQWRWPNPVMLCPIEEDELGFSVWDPRKNPR 121
WA++VAR+CQLYPNA+ S++V++FFR+ QW WP P++L PIE+ L +W+P+ P
Sbjct: 234 AWAMMVARICQLYPNAVSSVIVAKFFRILHQWNWPQPILLKPIEDGPLQVRIWNPKLYPS 293
Query: 122 DRSHHMPIITPAYPCMNSSYNVSLSTLRVMTEQFQWGNRICEEIELNKAQWSALFEPYLF 181
D++H MPIITPAYP M +++N++LST ++ + I ++I + WSALF+ + F
Sbjct: 294 DKAHRMPIITPAYPSMCATHNITLSTQTIILREMVRAGEIADQIMVKALPWSALFQKHDF 353
Query: 182 FEAYKNYLQVDIVAADADDLLTWKGWVESRFRQLTLKIERDTNGLLQCHPY 232
F YK+YL + A A+ L W G VES+ R L ++E + + HP+
Sbjct: 354 FHRYKHYLTITAAAKTAEAQLKWAGLVESKLRHLVTRLEL-VDAIALAHPF 403
>sp|P51006|PAPO3_XENLA Poly(A) polymerase type 3 (Fragment) OS=Xenopus laevis PE=2 SV=1
Length = 400
Score = 241 bits (616), Expect = 8e-63, Method: Compositional matrix adjust.
Identities = 114/193 (59%), Positives = 143/193 (74%), Gaps = 1/193 (0%)
Query: 6 NVDEQTVRSLNGCRVADQILKHVPNVEHFRMTLRCLKFWAKRRGVYSNVTGFLGGVNWAL 65
N+D + +RSLNGCRV D+IL VPN++ FR+TLR +K WAKR +YSN+ GFLGGV+WA+
Sbjct: 189 NLDIRCIRSLNGCRVTDEILHLVPNIDSFRLTLRAIKLWAKRHNIYSNILGFLGGVSWAM 248
Query: 66 LVARVCQLYPNAIPSMLVSRFFRVYTQWRWPNPVMLCPIEEDELGFSVWDPRKNPRDRSH 125
LVAR CQLYPNAI S LV +FF V+++W WPNPV+L EE L VWDPR NP DR H
Sbjct: 249 LVARTCQLYPNAIASTLVHKFFLVFSKWEWPNPVLLKQPEECNLNLPVWDPRVNPSDRYH 308
Query: 126 HMPIITPAYPCMNSSYNVSLSTLRVMTEQFQWGNRICEEIELNKAQWSALFEPYLFFEAY 185
MPIITPAYP NS+YNVS+ST VM E+F+ G I +EI L KA+WS LF+ FF+ Y
Sbjct: 309 LMPIITPAYPQQNSTYNVSVSTRAVMVEEFKQGLAITDEILLLKAEWSKLFDAPNFFQKY 368
Query: 186 KNYLQVDIVAADA 198
K Y+ +++A A
Sbjct: 369 K-YVFYNLLAMFA 380
>sp|P29468|PAP_YEAST Poly(A) polymerase OS=Saccharomyces cerevisiae (strain ATCC 204508
/ S288c) GN=PAP1 PE=1 SV=1
Length = 568
Score = 236 bits (603), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 117/278 (42%), Positives = 175/278 (62%), Gaps = 3/278 (1%)
Query: 2 SVLNNVDEQTVRSLNGCRVADQILKHVPNVEHFRMTLRCLKFWAKRRGVYSNVTGFLGGV 61
++L N+DE+ +R+LNG RV D+IL+ VP FR+ LR +K WA+RR VY+N+ GF GGV
Sbjct: 175 NLLRNLDEKDLRALNGTRVTDEILELVPKPNVFRIALRAIKLWAQRRAVYANIFGFPGGV 234
Query: 62 NWALLVARVCQLYPNAIPSMLVSRFFRVYTQWRWPNPVMLCPIEEDELGFSVWDPRKNPR 121
WA+LVAR+CQLYPNA +++++RFF + ++W WP PV+L PIE+ L VW+P+ +
Sbjct: 235 AWAMLVARICQLYPNACSAVILNRFFIILSEWNWPQPVILKPIEDGPLQVRVWNPKIYAQ 294
Query: 122 DRSHHMPIITPAYPCMNSSYNVSLSTLRVMTEQFQWGNRICEEIELNKAQWSALFEPYLF 181
DRSH MP+ITPAYP M +++N++ ST +V+ ++F G +I +I NK W+ LFE F
Sbjct: 295 DRSHRMPVITPAYPSMCATHNITESTKKVILQEFVRGVQITNDIFSNKKSWANLFEKNDF 354
Query: 182 FEAYKNYLQVDIVAADADDL-LTWKGWVESRFRQLTLKIERDTNGLLQCHPYPNEYIDPS 240
F YK YL++ +D+ L W G VES+ R L +K+E G+ HP+ + + S
Sbjct: 355 FFRYKFYLEITAYTRGSDEQHLKWSGLVESKVRLLVMKLEV-LAGIKIAHPFTKPF-ESS 412
Query: 241 KPCPNSAFFMGLRRKEGVTGKERQQFDIRGTVDNFREE 278
CP + ++ K G E ++ D +EE
Sbjct: 413 YCCPTEDDYEMIQDKYGSHKTETALNALKLVTDENKEE 450
>sp|Q9UW26|PAPA_CANAL Poly(A) polymerase PAPa OS=Candida albicans (strain SC5314 / ATCC
MYA-2876) GN=PAPA PE=3 SV=1
Length = 555
Score = 229 bits (583), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 110/238 (46%), Positives = 154/238 (64%), Gaps = 6/238 (2%)
Query: 2 SVLNNVDEQTVRSLNGCRVADQILKHVPNVEHFRMTLRCLKFWAKRRGVYSNVTGFLGGV 61
++L N+DE+ +R+LNG RV D+IL+ VP F+ LRC+K WA++R VY N+ GF GGV
Sbjct: 174 NLLKNIDEKDLRALNGTRVTDEILQLVPKPTVFKHALRCIKMWAQQRAVYGNIFGFPGGV 233
Query: 62 NWALLVARVCQLYPNAIPSMLVSRFFRVYTQWRWPNPVMLCPIEEDELGFSVWDPRKNPR 121
WA+LVAR+CQLYPNA+ +++V +FF +Y+QW WP PV+L IE+ L VW+PR
Sbjct: 234 AWAMLVARICQLYPNAVSAVIVEKFFHIYSQWAWPQPVLLKQIEDGPLQVRVWNPRLYAL 293
Query: 122 DRSHHMPIITPAYPCMNSSYNVSLSTLRVMTEQFQWGNRICEEIELNKAQWSALFEPYLF 181
DR H MP+ITPAYP M +++N++ ST +V+ +FQ G + +I + K WS L E + F
Sbjct: 294 DRQHRMPVITPAYPSMCATHNITSSTQKVILSEFQRGIELMNDINVGKKSWSDLLERHDF 353
Query: 182 FEAYKNYLQVDIVAADAD---DLLTWKGWVESRFRQLTLKIERDTNGLLQCHPYPNEY 236
F YK YL IVAA + L + G VES+ R L K+E G+ HPY +
Sbjct: 354 FFRYKFYLC--IVAATRSTYAEHLKYSGMVESKLRLLVQKLEL-VEGIELAHPYVKSF 408
>sp|P51005|PAPO2_XENLA Poly(A) polymerase alpha-B OS=Xenopus laevis GN=papola-b PE=2 SV=1
Length = 484
Score = 194 bits (494), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 129/364 (35%), Positives = 181/364 (49%), Gaps = 39/364 (10%)
Query: 65 LLVARVCQLYPNAIPSMLVSRFFRVYTQWRWPNPVMLCPIEEDELGFSVWDPRKNPRDRS 124
+LVAR CQLYPNAI S LV +FF V+++W WPNPV+L EE L VWDPR NP DR
Sbjct: 1 MLVARTCQLYPNAIASTLVHKFFLVFSKWEWPNPVLLKQPEECNLNLPVWDPRVNPSDRY 60
Query: 125 HHMPIITPAYPCMNSSYNVSLSTLRVMTEQFQWGNRICEEIELNKAQWSALFEPYLFFEA 184
H MPIITPAYP NS+YNVS+ST VM E+F+ G I +EI L KA+WS LF+ FF+
Sbjct: 61 HLMPIITPAYPQQNSTYNVSVSTRAVMVEEFKQGLAITDEILLVKAEWSKLFDAPNFFQK 120
Query: 185 YKNYLQVDIVAADADDLLTWKGWVESRFRQLTLKIERDTNGLLQCHPYPNEYIDPSKPCP 244
YK+Y+ + A L W G VES+ R L +E++ + H P + PS+
Sbjct: 121 YKHYILLLASAPTEKQRLEWVGLVESKIRILVGSLEKN-EFITLAHVNPQSFPSPSENSE 179
Query: 245 NSAF----FMGLRRKEGVTGKERQ---QFDIRGTVDN-FREEIGMYMFWKPGMDIYVSHV 296
F +GL K+ + +DI+ D +R+ I MF + + I HV
Sbjct: 180 KEEFRTMWVIGLVFKKMENSENLSVDLTYDIQSFTDTVYRQAINSKMF-ETEIKIAAMHV 238
Query: 297 RRRQ----LPSFVFPDGYKRPRPSRHFNEQAGKPCEDVKMCQSGSSGRHLKREKEHEMEE 352
+R+Q LPS V P K E VK+ S L + ++ M
Sbjct: 239 KRKQLHQLLPSHVLPKKKKH-------------SVEGVKLVSLNDSSIDLSVDSDNSMSV 285
Query: 353 VRPDKSVKRASIS----SEVPQPVSPGKTTGDSTNDSEVM--------SAGGHLVSEKDT 400
P + + + ++ S+ P +P + +T ++VM ++GG L
Sbjct: 286 PSPTNATRTSPLNSTGLSQGNSPATPVSLSVTNTQATDVMVPQNNSTENSGGSLNESIPE 345
Query: 401 MAAH 404
A H
Sbjct: 346 TATH 349
>sp|Q51D88|PAP_ENTHI Poly(A) polymerase OS=Entamoeba histolytica GN=16.t00038 PE=2 SV=1
Length = 522
Score = 112 bits (279), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 70/241 (29%), Positives = 121/241 (50%), Gaps = 16/241 (6%)
Query: 2 SVLNNVDEQTVRSLNGCRVADQILKHVPN--VEHFRMTLRCLKFWAKRRGVYSNVTGFLG 59
++L N+DE R++NG R D I VPN E FR+ +R +K W K+RG+Y V FL
Sbjct: 151 NILKNMDELDTRAINGVRNTDIIDAFVPNHSEEAFRVMVRTIKLWTKKRGIYGYVYCFLN 210
Query: 60 GVNWALLVARVCQLYPNAIPSMLVSRFFRVYTQWRW-PNPVMLCPIEEDELGFSVWDPRK 118
G++ +LVA+V L+ +FF+VY+ W W PVML D+
Sbjct: 211 GISIEILVAQVISENYQLDNVRLLEKFFQVYSSWDWLRTPVMLGT--NDDF--------- 259
Query: 119 NPRDRSHHMPIITPAYPCMNSSYNVSLSTLRVMTEQFQWGNRICEEIELNKAQ-WSALFE 177
N + + + I+TPA P N++++++ +L ++ + + G I E W+ LF+
Sbjct: 260 NDKKKEGVIQILTPASPSENAAFSITKFSLEMIKRELKRGQEIVHEFSSEGVNDWAKLFK 319
Query: 178 PYLFFEAYKNYLQVDIVAADADDLLTWKGWVESRFRQLTLKIERDTNGLLQCHPYPNEYI 237
P F Y +++ + ++ + L T G ES L +K + +++ + PN ++
Sbjct: 320 PRHLFCGYYIFIEFIVTSSSLEGLTTTIGKFESGLVNL-MKGLSEIEEIIEANVIPNGFL 378
Query: 238 D 238
D
Sbjct: 379 D 379
>sp|A2AJN7|S4A11_MOUSE Sodium bicarbonate transporter-like protein 11 OS=Mus musculus
GN=Slc4a11 PE=2 SV=1
Length = 862
Score = 32.3 bits (72), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 54/134 (40%), Gaps = 17/134 (12%)
Query: 403 AHMQLDGIVNHESVALNEQKCTLVDDL-SVINNESESSDLAEPSKPGLLGRCEIHSVDTV 461
AH LDG + S+ LNE +L D L +++N + + AEP C++ +
Sbjct: 100 AHRDLDGFLAQASIILNETATSLDDVLRTMLNRFALDPNHAEPD-------CDL----DL 148
Query: 462 SSGSLLNVKGVAIKVDQELVKPCNQMTVVEVAGREYESK----SCTQNLSCEGDDCVASL 517
L G ++ L+ Q V G +YE CT + C++ L
Sbjct: 149 LMAKLFTDAGAPMESKVHLLSDTIQGVTATVRGVQYEQSWLCIICTMKTLQKRHVCISRL 208
Query: 518 DTLSENGCLNSCEV 531
+N NSCEV
Sbjct: 209 -VRPQNWGENSCEV 221
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.133 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 212,614,208
Number of Sequences: 539616
Number of extensions: 9174173
Number of successful extensions: 20964
Number of sequences better than 100.0: 31
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 20926
Number of HSP's gapped (non-prelim): 34
length of query: 550
length of database: 191,569,459
effective HSP length: 123
effective length of query: 427
effective length of database: 125,196,691
effective search space: 53458987057
effective search space used: 53458987057
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 64 (29.3 bits)